5317 174 22 8 chr11 31 255 -150783298 - MER4-int LTR ERV1 -1716 5821 5602 242 56 28 0 chr11 255 291 -150783262 + (TA)n Simple_repeat Simple_repeat 1 37 0 5317 174 22 8 chr11 291 1126 -150782427 - MER4-int LTR ERV1 -1935 5602 4747 878 93 34 118 chr11 1128 1259 -150782294 - LTR8 LTR ERV1 -504 187 77 2031 118 10 10 chr11 1259 1556 -150781997 + AluSq SINE Alu 1 297 -16 878 93 34 118 chr11 1556 1628 -150781925 - LTR8 LTR ERV1 -614 77 1 364 210 34 125 chr11 1644 1885 -150781668 - MER4-int LTR ERV1 -3658 1982 1091 278 233 50 53 chr11 1895 2100 -150781453 - MER34C LTR ERV1 -172 413 154 2238 95 0 0 chr11 2180 2476 -150781077 + AluY SINE Alu 1 296 -15 353 191 12 12 chr11 2687 2771 -150780782 - MER4-int LTR ERV1 -6697 840 757 1304 152 56 106 chr11 2790 2876 -150780677 - AluJo SINE Alu -6 306 217 4277 71 5 23 chr11 2876 3440 -150780113 - MER41A LTR ERV1 0 554 1 1304 152 56 106 chr11 3440 3675 -150779878 - AluJo SINE Alu -95 217 1 3458 204 10 31 chr11 3675 4458 -150779095 - MER4-int LTR ERV1 -6770 767 1 1966 99 4 4 chr11 4476 4748 -150778805 + AluSx SINE Alu 1 272 -40 669 225 3 0 chr11 4863 5153 -150778400 + (TCCA)n Simple_repeat Simple_repeat 1 291 0 735 238 4 0 chr11 5182 5886 -150777667 + (TCCA)n Simple_repeat Simple_repeat 1 707 0 287 289 20 130 chr11 7217 7463 -150776090 - L3 LINE CR1 -437 1140 922 189 0 0 0 chr11 14182 14203 -150769350 + (CAGA)n Simple_repeat Simple_repeat 1 21 0 293 275 0 14 chr11 15166 15235 -150768318 + MIR3 SINE MIR 104 171 -37 2298 86 3 3 chr11 19161 19464 -150764089 - AluSp SINE Alu -10 303 1 187 270 25 82 chr11 22918 23077 -150760476 - L2 LINE L2 -190 3082 2933 189 147 0 52 chr11 24421 24537 -150759016 + (CCTG)n Simple_repeat Simple_repeat 2 111 0 299 204 0 56 chr11 24547 24709 -150758844 + CT-rich Low_complexity Low_complexity 2 154 0 576 174 31 6 chr11 24866 25027 -150758526 + CT-rich Low_complexity Low_complexity 2 166 0 211 204 0 0 chr11 25419 25463 -150758090 + CT-rich Low_complexity Low_complexity 2 45 0 235 291 63 13 chr11 28243 28322 -150755231 + MIR SINE MIR 108 190 -72 196 305 52 31 chr11 28439 28572 -150754981 - MIR SINE MIR -52 156 51 269 356 6 23 chr11 29025 29199 -150754354 + CT-rich Low_complexity Low_complexity 1 171 0 204 97 0 0 chr11 31152 31183 -150752370 + (TG)n Simple_repeat Simple_repeat 1 31 0 188 163 0 20 chr11 33880 33929 -150749624 + CT-rich Low_complexity Low_complexity 3 50 0 300 111 0 0 chr11 34026 34071 -150749482 + (TCCC)n Simple_repeat Simple_repeat 2 46 0 209 284 21 11 chr11 34326 34421 -150749132 + CT-rich Low_complexity Low_complexity 2 97 0 315 191 0 0 chr11 34421 34484 -150749069 + C-rich Low_complexity Low_complexity 1 63 0 220 323 32 0 chr11 35000 35093 -150748460 - MIR SINE MIR -74 134 39 276 217 300 17 chr11 36065 36185 -150747368 + L3 LINE CR1 1349 1502 -75 587 200 0 7 chr11 36306 36446 -150747107 + (TCCA)n Simple_repeat Simple_repeat 4 142 0 237 224 0 0 chr11 36582 36631 -150746922 + Alu SINE Alu 237 285 -17 227 217 0 0 chr11 36639 36685 -150746868 + Alu SINE Alu 237 282 -20 227 217 0 0 chr11 36704 36750 -150746803 + Alu SINE Alu 237 282 -20 263 184 0 0 chr11 36765 36814 -150746739 + Alu SINE Alu 237 285 -17 227 217 0 0 chr11 36879 36925 -150746628 + Alu SINE Alu 237 282 -20 227 217 0 0 chr11 36940 36986 -150746567 + Alu SINE Alu 237 282 -20 195 69 0 0 chr11 36993 37022 -150746531 + (CA)n Simple_repeat Simple_repeat 1 29 0 231 61 0 0 chr11 37052 37085 -150746468 + (CA)n Simple_repeat Simple_repeat 1 33 0 210 91 0 0 chr11 37119 37152 -150746401 + (CA)n Simple_repeat Simple_repeat 1 33 0 231 61 0 0 chr11 37182 37215 -150746338 + (CA)n Simple_repeat Simple_repeat 1 33 0 252 204 0 0 chr11 37253 37302 -150746251 + AluJ/monomer SINE Alu 237 285 -17 249 57 0 0 chr11 37384 37419 -150746134 + (CA)n Simple_repeat Simple_repeat 1 35 0 253 83 0 0 chr11 37419 37455 -150746098 + Alu SINE Alu 250 285 -17 339 111 25 12 chr11 37501 37582 -150745971 + (CA)n Simple_repeat Simple_repeat 2 83 0 235 132 0 0 chr11 37595 37633 -150745920 + Alu SINE Alu 247 284 -18 204 40 0 0 chr11 37633 37658 -150745895 + (CA)n Simple_repeat Simple_repeat 2 26 0 258 32 0 0 chr11 37688 37719 -150745834 + (CA)n Simple_repeat Simple_repeat 2 32 0 270 0 0 0 chr11 37801 37831 -150745722 + (CA)n Simple_repeat Simple_repeat 1 30 0 1907 162 10 36 chr11 38177 38528 -150745025 - MLT1B LTR MaLR -5 385 43 2175 86 17 0 chr11 38528 38818 -150744735 - AluSx SINE Alu -17 295 1 1907 162 10 36 chr11 38818 38854 -150744699 - MLT1B LTR MaLR -347 43 8 999 135 6 6 chr11 38922 39078 -150744475 - AluJb SINE Alu -156 156 1 341 318 26 0 chr11 39703 39854 -150743699 + (TCTA)n Simple_repeat Simple_repeat 4 158 0 265 229 8 8 chr11 39856 39978 -150743575 + (TCCA)n Simple_repeat Simple_repeat 3 124 0 377 328 8 0 chr11 40140 40262 -150743291 + (TCCA)n Simple_repeat Simple_repeat 4 126 0 731 162 12 12 chr11 40315 40488 -150743065 + (TCCA)n Simple_repeat Simple_repeat 4 176 0 266 319 45 70 chr11 42552 42675 -150740878 + MIR SINE MIR 89 209 -53 2090 117 0 3 chr11 42675 42973 -150740580 + AluSx SINE Alu 1 297 -15 266 319 45 70 chr11 42973 43006 -150740547 + MIR SINE MIR 209 241 -21 195 250 54 18 chr11 43020 43076 -150740477 - MIR SINE MIR -58 150 93 322 172 17 103 chr11 49297 49372 -150734181 - MER45A DNA AcHobo -1405 176 113 2296 100 0 0 chr11 49372 49681 -150733872 + AluSx SINE Alu 1 309 -3 322 172 17 103 chr11 49681 49721 -150733832 - MER45A DNA AcHobo -1468 113 71 833 228 103 70 chr11 49864 50052 -150733501 + MLT1C LTR MaLR 9 189 -278 2294 88 0 25 chr11 50052 50369 -150733184 + AluY SINE Alu 1 309 -2 833 228 103 70 chr11 50369 50539 -150733014 + MLT1C LTR MaLR 189 379 -88 234 0 0 0 chr11 51152 51178 -150732375 + (TG)n Simple_repeat Simple_repeat 1 26 0 1720 165 0 14 chr11 51190 51475 -150732078 - AluJb SINE Alu -29 283 3 816 157 8 15 chr11 52554 52688 -150730865 - FLAM_C SINE Alu 0 133 1 1501 145 47 63 chr11 52697 53014 -150730539 - AluJb SINE Alu 0 312 1 351 327 60 36 chr11 53830 54215 -150729338 - L2 LINE L2 -66 3206 2813 246 62 0 0 chr11 54870 54902 -150728651 + (CCCTAA)n Simple_repeat Simple_repeat 1 32 0 300 296 84 56 chr11 55144 55286 -150728267 - L1MC4 LINE L1 -10 8032 7887 392 354 86 48 chr11 55295 55852 -150727701 - L1M4c LINE L1 -4896 1488 911 463 266 36 0 chr11 55996 56186 -150727367 - L1MC4 LINE L1 -993 6900 6616 215 175 35 18 chr11 59756 59813 -150723740 + (CCCG)n Simple_repeat Simple_repeat 3 60 0 280 231 66 0 chr11 64341 64432 -150719121 + (CAGCC)n Simple_repeat Simple_repeat 4 100 0 486 49 0 0 chr11 66870 66931 -150716622 + (CA)n Simple_repeat Simple_repeat 2 62 0 811 190 74 0 chr11 67240 67403 -150716150 + MER45A DNA AcHobo 1 175 -3 211 189 0 0 chr11 67769 67806 -150715747 + (CGTG)n Simple_repeat Simple_repeat 3 39 0 262 260 10 30 chr11 76287 76387 -150707166 + (CACG)n Simple_repeat Simple_repeat 2 99 0 690 130 10 0 chr11 78574 78674 -150704879 - AluY SINE Alu -108 203 103 227 183 14 0 chr11 78919 78990 -150704563 - L1MDb LINE L1 -5202 1207 1136 813 193 175 9 chr11 79111 79334 -150704219 - Tigger7 DNA MER2_type -16 2571 2312 564 211 0 68 chr11 79341 79410 -150704143 - Tigger7 DNA MER2_type -534 171 115 2018 121 7 0 chr11 79410 79734 -150703819 + AluSx SINE Alu 1 326 0 564 211 0 68 chr11 79734 79810 -150703743 - Tigger7 DNA MER2_type -590 115 35 1399 210 20 37 chr11 79835 80092 -150703461 - MLT1B LTR MaLR -48 342 91 1485 112 0 31 chr11 80092 80316 -150703237 + AluSg/x SINE Alu 86 302 -10 1399 210 20 37 chr11 80316 80406 -150703147 - MLT1B LTR MaLR -299 91 1 2067 127 0 0 chr11 81989 82288 -150701265 + AluSx SINE Alu 1 299 -13 2176 125 0 3 chr11 82530 82834 -150700719 + AluSx SINE Alu 1 303 -9 1132 190 73 6 chr11 82849 83137 -150700416 + L1MB3 LINE L1 5875 6182 -1 768 293 6 45 chr11 83152 83486 -150700067 + L1MC4 LINE L1 6703 7023 -1019 1389 218 199 31 chr11 83536 84049 -150699504 + MLT1E1 LTR MaLR 56 654 0 384 185 152 26 chr11 84114 84265 -150699288 + L1MC5 LINE L1 7036 7205 -756 566 188 228 0 chr11 84266 84415 -150699138 + MER20 DNA MER1_type 1 183 -36 1869 213 158 4 chr11 84421 84928 -150698625 + MLT1E LTR MaLR 7 591 -2 889 257 139 46 chr11 85055 85581 -150697972 - MLT1E2 LTR MaLR 0 626 52 594 238 0 21 chr11 85642 85785 -150697768 - MER58A DNA MER1_type 0 140 1 400 314 78 26 chr11 86053 86359 -150697194 + L1MC5 LINE L1 7400 7721 -240 215 200 0 0 chr11 87098 87133 -150696420 + polypurine Low_complexity Low_complexity 1 35 0 1122 166 0 3 chr11 87147 87458 -150696095 + (TGGA)n Simple_repeat Simple_repeat 1 311 0 1629 137 4 15 chr11 87559 87830 -150695723 - AluJo SINE Alu -40 272 5 1417 258 95 54 chr11 87835 88426 -150695127 - L1ME1 LINE L1 -223 6012 5337 2275 97 0 0 chr11 88426 88724 -150694829 - AluSq SINE Alu -8 305 8 1417 258 95 54 chr11 88724 89149 -150694404 - L1ME1 LINE L1 -898 5337 4931 899 183 0 12 chr11 89149 89313 -150694240 + AluJb SINE Alu 128 289 -23 1557 276 72 30 chr11 89327 90178 -150693375 - L1ME1 LINE L1 -1306 4909 3978 2089 193 33 0 chr11 90179 90568 -150692985 - MER57A LTR ERV1 0 403 2 940 198 45 0 chr11 90577 90779 -150692774 - MER57A-int LTR ERV1 -47 7490 7280 588 145 23 30 chr11 90779 90910 -150692643 - LTR54B LTR ERV1 -366 132 3 2130 205 13 26 chr11 90910 91378 -150692175 - MER57A-int LTR ERV1 -391 7146 6685 1353 111 5 0 chr11 91761 91950 -150691603 + AluY SINE Alu 103 292 -19 364 320 31 2 chr11 91994 92179 -150691374 + L1M4 LINE L1 5175 5363 -783 2139 129 3 0 chr11 92397 92706 -150690847 + AluSx SINE Alu 1 310 -2 1710 154 48 3 chr11 92931 93223 -150690330 + AluJo SINE Alu 1 305 -7 2188 100 3 3 chr11 93537 93836 -150689717 - AluSx SINE Alu -13 299 1 1937 134 0 49 chr11 93836 94164 -150689389 - AluJb SINE Alu 0 312 1 943 219 24 39 chr11 94166 94234 -150689319 - L1ME1 LINE L1 -4038 2358 2291 1560 166 7 36 chr11 94234 94536 -150689017 - AluJo SINE Alu -19 293 1 943 219 24 39 chr11 94536 94805 -150688748 - L1ME1 LINE L1 -4105 2291 2026 1677 263 69 73 chr11 94815 95658 -150687895 - L1ME1 LINE L1 -5523 873 35 2070 111 0 7 chr11 95826 96124 -150687429 - AluSx SINE Alu -16 296 1 350 276 31 34 chr11 96387 96546 -150687007 + MIR SINE MIR 31 187 -68 450 415 36 36 chr11 96741 97131 -150686422 - L1M4 LINE L1 -1525 4621 4232 304 298 31 19 chr11 97141 97302 -150686251 - L1M4 LINE L1 -1948 4198 4036 729 105 202 0 chr11 97513 97627 -150685926 + AluJb SINE Alu 1 137 -175 1450 158 90 23 chr11 97629 97740 -150685813 + AluJb SINE Alu 3 105 -207 2348 77 7 0 chr11 97740 98039 -150685514 + AluSc SINE Alu 1 301 -8 1450 158 90 23 chr11 98039 98219 -150685334 + AluJb SINE Alu 105 312 0 1594 74 5 0 chr11 98667 98870 -150684683 - AluSg/x SINE Alu -20 292 89 2042 62 13 65 chr11 98977 99286 -150684267 - AluY SINE Alu -18 293 1 424 337 58 0 chr11 99286 99458 -150684095 - L1M4 LINE L1 -3109 3037 2856 201 261 25 25 chr11 100062 100181 -150683372 + (TG)n Simple_repeat Simple_repeat 2 120 0 221 240 31 31 chr11 100215 100344 -150683209 + (TG)n Simple_repeat Simple_repeat 2 130 0 243 0 0 0 chr11 100423 100450 -150683103 + (TG)n Simple_repeat Simple_repeat 2 28 0 243 0 0 0 chr11 100694 100721 -150682832 + (TG)n Simple_repeat Simple_repeat 2 28 0 261 294 20 20 chr11 100753 100906 -150682647 + (TG)n Simple_repeat Simple_repeat 2 154 0 243 0 0 0 chr11 100980 101007 -150682546 + (TG)n Simple_repeat Simple_repeat 2 28 0 189 74 0 0 chr11 101228 101255 -150682298 + (TG)n Simple_repeat Simple_repeat 2 28 0 371 193 48 24 chr11 101366 101532 -150682021 + (TG)n Simple_repeat Simple_repeat 1 170 0 369 182 18 18 chr11 107806 107916 -150675637 + (TGGA)n Simple_repeat Simple_repeat 3 112 0 616 242 4 4 chr11 107955 108192 -150675361 + (TGGG)n Simple_repeat Simple_repeat 1 237 0 735 192 0 0 chr11 108193 108370 -150675183 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 205 171 0 0 chr11 108393 108428 -150675125 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 327 330 70 70 chr11 109228 109573 -150673980 + L1ME4a LINE L1 5016 5360 -786 1211 288 76 43 chr11 109625 110306 -150673247 + L1ME4a LINE L1 5418 6121 0 205 156 47 47 chr11 116924 117061 -150666492 + (CAGAGA)n Simple_repeat Simple_repeat 1 137 0 207 100 0 0 chr11 118097 118127 -150665426 + (GA)n Simple_repeat Simple_repeat 2 31 0 207 100 0 0 chr11 118637 118667 -150664886 + (GA)n Simple_repeat Simple_repeat 2 31 0 191 133 22 0 chr11 118823 118868 -150664685 + GA-rich Low_complexity Low_complexity 2 47 0 316 265 31 20 chr11 119073 119171 -150664382 - L3 LINE CR1 -12 1565 1467 766 224 12 9 chr11 125700 126022 -150657531 + (TCCA)n Simple_repeat Simple_repeat 1 323 0 332 263 0 0 chr11 126052 126189 -150657364 + (TCCA)n Simple_repeat Simple_repeat 2 138 0 315 156 21 104 chr11 126535 126620 -150656933 + FRAM SINE Alu 72 150 -152 384 22 0 0 chr11 126620 126665 -150656888 + (CA)n Simple_repeat Simple_repeat 2 46 0 189 154 0 0 chr11 127268 127307 -150656246 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 180 125 0 0 chr11 127435 127467 -150656086 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 180 77 0 0 chr11 127486 127512 -150656041 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 2247 242 23 0 chr11 128003 128578 -150654975 + L1MC1 LINE L1 5498 6085 -248 794 187 74 20 chr11 128577 128780 -150654773 + L1MC2 LINE L1 6120 6333 -11 * 1857 146 14 0 chr11 128796 129110 -150654443 + AluSx SINE Alu 1 318 0 2255 100 0 19 chr11 129111 129422 -150654131 + AluSc SINE Alu 1 305 -4 302 100 67 0 chr11 129426 129486 -150654067 + MER53 DNA DNA 125 188 -1 219 254 16 70 chr11 131060 131245 -150652308 + G-rich Low_complexity Low_complexity 4 178 0 380 228 31 19 chr11 131275 131491 -150652062 + (CGGGG)n Simple_repeat Simple_repeat 1 218 0 23 68 0 0 chr11 131959 132003 -150651550 + GC_rich Low_complexity Low_complexity 1 44 0 321 250 104 0 chr11 136380 136476 -150647077 - MIR SINE MIR -134 128 23 1257 280 104 10 chr11 145349 145838 -150637715 - L1MB7 LINE L1 0 6184 5650 1970 125 54 0 chr11 150244 150540 -150633013 + AluSx SINE Alu 1 312 0 376 219 10 0 chr11 161647 161743 -150621810 + L1MB3 LINE L1 6029 6125 -58 2183 103 7 0 chr11 162510 162812 -150620741 + AluSp SINE Alu 3 306 -7 390 292 28 35 chr11 169405 169549 -150614004 + MIR SINE MIR 2 144 -118 1841 168 27 0 chr11 170085 170382 -150613171 - AluJo SINE Alu -7 305 1 264 77 0 0 chr11 171260 171299 -150612254 + (GGCTG)n Simple_repeat Simple_repeat 1 39 0 * 891 129 0 0 chr11 171298 171476 -150612077 + (CAGGG)n Simple_repeat Simple_repeat 3 180 0 453 147 0 0 chr11 171476 171571 -150611982 + (GGCTG)n Simple_repeat Simple_repeat 4 98 0 211 308 15 0 chr11 175372 175437 -150608116 + G-rich Low_complexity Low_complexity 1 66 0 387 0 0 0 chr11 175586 175629 -150607924 + (CA)n Simple_repeat Simple_repeat 1 43 0 3699 140 42 74 chr11 187516 187551 -150596002 + LTR8 LTR ERV1 1 36 -655 2207 119 0 0 chr11 187551 187861 -150595692 + AluSq SINE Alu 1 310 -3 3699 140 42 74 chr11 187861 188537 -150595016 + LTR8 LTR ERV1 36 689 -2 2302 73 20 0 chr11 188788 189090 -150594463 - AluY SINE Alu -2 309 2 728 276 107 48 chr11 189940 190360 -150593193 - MLT1C LTR MaLR -6 461 17 1099 210 20 0 chr11 190688 190940 -150592613 + MLT1B LTR MaLR 128 384 -6 789 297 50 28 chr11 191178 191575 -150591978 - MLT1C LTR MaLR -9 458 53 555 321 29 7 chr11 191689 191963 -150591590 + MLT2F LTR ERVL 380 659 -4 331 312 70 28 chr11 192149 192643 -150590910 + MLT1H1 LTR MaLR 28 540 -15 180 0 0 0 chr11 193606 193626 -150589927 + (TC)n Simple_repeat Simple_repeat 1 20 0 221 234 0 0 chr11 194302 194349 -150589204 + L2 LINE L2 3266 3312 -1 233 202 40 40 chr11 195589 195688 -150587865 + MLT1J2 LTR MaLR 264 362 -88 944 242 60 4 chr11 197115 197396 -150586157 + MLT1B LTR MaLR 1 297 -93 396 40 0 0 chr11 198820 198870 -150584683 + (TCC)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr11 198960 198981 -150584572 + AT_rich Low_complexity Low_complexity 1 21 0 2186 103 0 13 chr11 204150 204460 -150579093 + AluSp SINE Alu 1 306 -7 553 235 92 31 chr11 204482 204678 -150578875 + MER63A DNA MER1_type 1 208 -2 189 167 0 0 chr11 205401 205455 -150578098 + (GTGTG)n Simple_repeat Simple_repeat 5 58 0 471 285 26 47 chr11 206737 206930 -150576623 - MER53 DNA DNA 0 189 1 289 225 8 4 chr11 207733 207980 -150575573 + (TG)n Simple_repeat Simple_repeat 1 248 0 246 240 0 0 chr11 210578 210628 -150572925 - MIR3 SINE MIR -50 158 109 2569 42 0 3 chr11 224821 225131 -150558422 + AluY SINE Alu 1 309 -2 195 300 0 43 chr11 225605 225675 -150557878 + L2 LINE L2 3227 3293 -20 365 328 87 45 chr11 226208 226543 -150557010 - L1MEd LINE L1 -5013 1106 758 309 385 70 45 chr11 227165 227477 -150556076 - L1MEd LINE L1 -4959 1160 841 1652 145 106 0 chr11 227497 227779 -150555774 - AluSx SINE Alu 0 312 1 1864 128 0 4 chr11 279176 279449 -150504104 - AluSx SINE Alu -29 283 12 757 124 0 83 chr11 279478 279623 -150503930 - FLAM_C SINE Alu 0 133 1 913 280 94 9 chr11 279630 280052 -150503501 - L1M4 LINE L1 -864 5282 4785 711 250 30 0 chr11 280052 280220 -150503333 - MER20 DNA MER1_type 0 219 47 490 207 0 0 chr11 280236 280323 -150503230 - MLT1B LTR MaLR -15 375 289 874 217 0 17 chr11 280323 280503 -150503050 - AluSx SINE Alu -133 179 3 1430 245 39 55 chr11 280587 281207 -150502346 - L1M4 LINE L1 -2508 3638 3029 601 225 0 0 chr11 281214 281334 -150502219 - AluJb SINE Alu -8 304 185 2047 104 24 0 chr11 281875 282163 -150501390 - AluSx SINE Alu -16 296 2 257 292 44 9 chr11 282784 282897 -150500656 - L1M4 LINE L1 -2587 3559 3443 944 121 0 7 chr11 282944 283084 -150500469 - AluSg/x SINE Alu -10 300 162 414 84 0 92 chr11 283288 283430 -150500123 + (TCTCC)n Simple_repeat Simple_repeat 5 133 0 1801 160 43 62 chr11 283787 284205 -150499348 - MLT2D LTR ERVL 0 414 5 200 230 150 40 chr11 284617 284717 -150498836 + L2 LINE L2 3161 3271 -1 454 117 0 0 chr11 285633 285693 -150497860 + AluS SINE Alu 232 291 -19 949 208 0 0 chr11 285711 285894 -150497659 - AluJb SINE Alu -5 307 125 1750 114 4 4 chr11 285958 286222 -150497331 - AluSx SINE Alu -48 264 1 227 303 101 8 chr11 286268 286387 -150497166 - L1M4 LINE L1 -3352 2794 2665 2001 107 0 14 chr11 287730 288020 -150495533 + AluSx SINE Alu 1 286 -26 2095 246 127 25 chr11 288054 288746 -150494807 - L1ME1 LINE L1 -54 6181 5412 315 0 0 0 chr11 288746 288781 -150494772 + (TA)n Simple_repeat Simple_repeat 1 35 0 2095 246 127 25 chr11 288781 288807 -150494746 - L1ME1 LINE L1 -823 5412 5390 1955 120 3 42 chr11 288807 289116 -150494437 - AluSx SINE Alu -15 297 1 3819 136 3 8 chr11 289132 289742 -150493811 + L1PB3 LINE L1 5546 6152 -2 31 26 0 0 chr11 289742 289780 -150493773 + AT_rich Low_complexity Low_complexity 1 38 0 1302 248 3 7 chr11 289827 290130 -150493423 - AluSx SINE Alu 0 302 1 33 43 0 0 chr11 290133 290180 -150493373 + AT_rich Low_complexity Low_complexity 1 47 0 1376 218 12 65 chr11 290308 290614 -150492939 - L1ME1 LINE L1 -2008 4207 3927 2341 65 0 34 chr11 290614 290936 -150492617 - AluY SINE Alu 0 311 1 1376 218 12 65 chr11 290936 291041 -150492512 - L1ME1 LINE L1 -2288 3927 3818 790 267 40 30 chr11 291043 291339 -150492214 - L1M4 LINE L1 -761 5385 5087 907 204 0 0 chr11 291344 291511 -150492042 + FRAM SINE Alu 1 163 -13 1473 217 72 21 chr11 291512 291940 -150491613 - L1M4 LINE L1 -1059 5087 4638 722 205 8 0 chr11 291942 292064 -150491489 + FLAM_C SINE Alu 2 124 -19 910 257 30 10 chr11 292094 292390 -150491163 - L1M4 LINE L1 -1503 4643 4342 2249 109 0 0 chr11 292401 292703 -150490850 - AluSx SINE Alu -10 302 1 1729 219 50 48 chr11 292705 293201 -150490352 - L1ME1 LINE L1 -3999 2397 1898 2091 117 0 0 chr11 293201 293499 -150490054 + AluSx SINE Alu 1 298 -14 1729 219 50 48 chr11 293499 293563 -150489990 - L1ME1 LINE L1 -4498 1898 1836 195 42 0 0 chr11 293970 293994 -150489559 + (A)n Simple_repeat Simple_repeat 1 24 0 1251 246 60 67 chr11 293996 294643 -150488910 - L1ME1 LINE L1 -4599 1797 1155 2345 88 3 0 chr11 294644 294952 -150488601 - AluY SINE Alu 0 311 3 814 105 0 0 chr11 294952 295057 -150488496 - AluSg/x SINE Alu -14 296 192 334 89 13 0 chr11 295158 295209 -150488344 - Alu SINE Alu -262 41 1 2173 221 58 81 chr11 295233 296014 -150487539 - L1ME1 LINE L1 -5300 1096 334 1599 105 42 0 chr11 296019 296258 -150487295 - AluSx SINE Alu -12 300 52 1937 78 0 0 chr11 296451 296706 -150486847 - AluY SINE Alu 0 311 57 183 42 0 0 chr11 296981 297005 -150486548 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1887 98 49 0 chr11 297005 297271 -150486282 - AluSx SINE Alu -33 279 1 745 301 105 18 chr11 297952 298145 -150485408 - L2 LINE L2 -756 2558 2383 2168 80 6 16 chr11 298145 298456 -150485097 - AluSx SINE Alu 0 312 5 745 301 105 18 chr11 298456 298654 -150484899 - L2 LINE L2 -931 2383 2133 312 263 50 0 chr11 298838 298937 -150484616 + MIR SINE MIR 2 105 -157 2141 106 0 13 chr11 298982 299283 -150484270 - AluSx SINE Alu -15 297 1 436 301 76 42 chr11 299356 299618 -150483935 + L1M4 LINE L1 5063 5333 -813 429 298 42 26 chr11 299751 300095 -150483458 - L1ME LINE L1 -716 5454 5106 383 250 27 27 chr11 300154 300302 -150483251 + L1ME3A LINE L1 6011 6158 -12 910 240 413 7 chr11 300740 301178 -150482375 + L1MC4 LINE L1 6469 7084 -958 989 216 90 50 chr11 301276 301424 -150482129 + L1MC4 LINE L1 7322 7463 -579 1454 200 104 35 chr11 301424 301769 -150481784 + MLT1A2 LTR MaLR 2 370 -4 989 216 90 50 chr11 301769 301898 -150481655 + L1MC4 LINE L1 7463 7610 -432 338 248 67 89 chr11 301916 302186 -150481367 - L1M4 LINE L1 -926 5154 4891 382 347 17 42 chr11 302616 302855 -150480698 - L1M4 LINE L1 -1194 4886 4654 1688 275 75 56 chr11 302856 303377 -150480176 - L1ME LINE L1 -2734 3346 2836 2366 47 0 14 chr11 303377 303674 -150479879 - AluY SINE Alu -17 294 2 1688 275 75 56 chr11 303674 303697 -150479856 - L1ME LINE L1 -3244 2836 2815 1937 108 34 10 chr11 303697 303993 -150479560 - AluSq SINE Alu -10 303 1 1688 275 75 56 chr11 303993 304595 -150478958 - L1ME LINE L1 -3265 2815 2226 1519 98 0 0 chr11 304595 304798 -150478755 - AluSg/x SINE Alu -24 286 84 1744 151 0 30 chr11 304800 305104 -150478449 - AluJo SINE Alu -17 295 1 1688 275 75 56 chr11 305104 305300 -150478253 - L1ME LINE L1 -3854 2226 2035 1888 119 7 4 chr11 305300 305598 -150477955 - AluSg SINE Alu 0 299 1 1688 275 75 56 chr11 305598 306195 -150477358 - L1ME LINE L1 -4045 2035 1334 233 278 9 56 chr11 306424 306532 -150477021 - MER103 DNA DNA -45 121 19 439 297 91 61 chr11 306666 307072 -150476481 - L1ME LINE L1 -5162 908 551 363 36 0 18 chr11 307437 307493 -150476060 - AluY SINE Alu 0 301 247 234 184 41 0 chr11 307471 307520 -150476033 - Alu SINE Alu -248 51 1 * 820 101 0 0 chr11 307546 307655 -150475898 + AluSq/x SINE Alu 3 111 -202 1823 64 4 0 chr11 307655 307889 -150475664 - AluY SINE Alu -76 235 1 1343 112 5 0 chr11 308360 308548 -150475005 + AluSx SINE Alu 1 189 -123 638 181 206 0 chr11 308649 308804 -150474749 - MER34 LTR ERV1 -316 226 40 1968 89 62 3 chr11 308815 309107 -150474446 - AluSc SINE Alu 0 309 1 510 240 177 40 chr11 309188 309663 -150473890 - L1M4 LINE L1 -2848 3298 2759 599 285 14 36 chr11 309664 309764 -150473789 - L1M4 LINE L1 -2479 3667 3566 2102 124 0 6 chr11 309764 310079 -150473474 - AluSq SINE Alu 0 313 1 599 285 14 36 chr11 310079 310199 -150473354 - L1M4 LINE L1 -2580 3566 3452 441 316 109 41 chr11 310496 310889 -150472664 - L1ME LINE L1 -5611 459 40 480 297 44 27 chr11 311025 311298 -150472255 + L1ME2 LINE L1 2719 3001 -3145 1670 226 30 6 chr11 311298 311634 -150471919 + MER2 DNA MER2_type 1 344 0 480 297 44 27 chr11 311634 311727 -150471826 + L1ME2 LINE L1 3001 3091 -3055 189 139 0 0 chr11 313175 313218 -150470335 + (T)n Simple_repeat Simple_repeat 1 43 0 2253 80 0 22 chr11 313609 313921 -150469632 - AluY SINE Alu -6 305 1 720 324 21 64 chr11 314098 314521 -150469032 + L1ME2 LINE L1 3056 3460 -2686 281 343 75 0 chr11 314648 314782 -150468771 + L1ME2 LINE L1 3620 3763 -2383 2045 53 4 15 chr11 315011 315277 -150468276 + L1PA4 LINE L1 5889 6151 -4 2208 101 7 7 chr11 315392 315700 -150467853 - AluSq SINE Alu -5 308 1 446 254 45 50 chr11 315701 315921 -150467632 - L1M4 LINE L1 -2059 4087 3869 730 223 52 24 chr11 316212 316423 -150467130 + L1ME2 LINE L1 4915 5131 -1015 2240 91 3 0 chr11 316428 316725 -150466828 + AluSx SINE Alu 1 298 -14 973 220 43 134 chr11 316730 316952 -150466601 + L1ME2 LINE L1 5604 5845 -321 1907 194 49 61 chr11 316952 317463 -150466090 + MLT1D LTR MaLR 1 505 0 973 220 43 134 chr11 317463 317838 -150465715 + L1ME2 LINE L1 5845 6139 -27 1028 208 81 0 chr11 317850 318071 -150465482 - Tigger3(Golem) DNA MER2_type 0 3038 2800 394 311 0 0 chr11 318084 318187 -150465366 - Tigger3(Golem) DNA MER2_type -2894 135 33 1850 167 0 16 chr11 318209 318526 -150465027 + AluJo SINE Alu 1 312 0 1897 160 82 3 chr11 319222 319578 -150463975 + MLT1B LTR MaLR 1 384 -6 1506 248 111 15 chr11 320715 321174 -150462379 - MLT1D LTR MaLR 0 505 3 279 226 0 59 chr11 323840 323942 -150459611 + L2 LINE L2 3139 3234 -38 189 237 68 0 chr11 324748 324807 -150458746 - MIR SINE MIR -92 170 108 299 247 67 11 chr11 324873 324962 -150458591 - MIR SINE MIR -92 170 77 207 272 19 76 chr11 326066 326224 -150457329 + (CACCC)n Simple_repeat Simple_repeat 1 149 0 222 287 52 9 chr11 326455 326570 -150456983 + (CAGCC)n Simple_repeat Simple_repeat 1 120 0 1656 241 56 9 chr11 326877 327326 -150456227 + MLT1D LTR MaLR 2 471 -34 321 68 0 0 chr11 328137 328181 -150455372 + (CA)n Simple_repeat Simple_repeat 2 45 0 4998 172 31 14 chr11 328183 328567 -150454986 - L1MC2 LINE L1 -114 6230 5854 1625 170 7 3 chr11 328567 328867 -150454686 - AluJb SINE Alu -11 301 1 4998 172 31 14 chr11 328867 329509 -150454044 - L1MC2 LINE L1 -490 5854 5188 1176 252 128 48 chr11 329779 330020 -150453533 + L2 LINE L2 1824 2044 -1270 2051 122 20 0 chr11 330020 330324 -150453229 - AluSx SINE Alu -2 310 1 1176 252 128 48 chr11 330324 330709 -150452844 + L2 LINE L2 2044 2500 -814 4779 92 22 15 chr11 330709 330869 -150452684 - LTR8 LTR ERV1 0 691 534 647 83 0 21 chr11 330869 331003 -150452550 - L1PA6 LINE L1 0 6154 6060 4779 92 22 15 chr11 331003 331527 -150452026 - LTR8 LTR ERV1 -157 534 2 269 246 14 0 chr11 331531 331600 -150451953 + L2 LINE L2 2497 2566 -748 2017 113 3 0 chr11 331740 332031 -150451522 + AluSq SINE Alu 2 293 -20 197 346 13 13 chr11 332235 332313 -150451240 + L2 LINE L2 3234 3311 -2 302 246 0 0 chr11 333157 333222 -150450331 - L2 LINE L2 -3 3310 3246 223 292 0 0 chr11 334117 334165 -150449388 + L2 LINE L2 3003 3050 -263 844 87 46 9 chr11 335130 335350 -150448203 + (TCCA)n Simple_repeat Simple_repeat 1 228 0 922 103 50 0 chr11 335368 335826 -150447727 + (TCCA)n Simple_repeat Simple_repeat 1 480 0 202 231 0 0 chr11 336298 336337 -150447216 + T-rich Low_complexity Low_complexity 2 40 0 1274 227 94 6 chr11 336592 336922 -150446631 - MLT1A1 LTR MaLR -6 359 1 1471 286 91 20 chr11 337354 337517 -150446036 + L2 LINE L2 2036 2186 -1128 2013 140 81 69 chr11 337517 337939 -150445614 - MSTA LTR MaLR -1 427 1 1471 286 91 20 chr11 337939 338352 -150445201 + L2 LINE L2 2186 2667 -647 2311 107 0 0 chr11 338352 338660 -150444893 - AluSg SINE Alu -2 308 1 1471 286 91 20 chr11 338660 338739 -150444814 + L2 LINE L2 2667 2739 -575 598 264 78 103 chr11 338784 339281 -150444272 + L2 LINE L2 2827 3311 -2 503 274 73 6 chr11 339559 339596 -150443957 + L2 LINE L2 2422 2455 -859 2315 72 23 7 chr11 339596 339901 -150443652 - AluSg SINE Alu 0 310 1 503 274 73 6 chr11 339901 340027 -150443526 + L2 LINE L2 2455 2596 -718 425 215 0 0 chr11 340246 340325 -150443228 + Tigger5 DNA MER2_type 1 79 -2244 335 274 0 0 chr11 340380 340453 -150443100 + Tigger5 DNA MER2_type 2248 2320 -3 735 291 34 17 chr11 341057 341291 -150442262 - MIR SINE MIR -24 238 1 397 333 60 34 chr11 341356 341623 -150441930 + L1M4 LINE L1 4296 4569 -1577 658 107 76 0 chr11 341822 342158 -150441395 + (CACTC)n Simple_repeat Simple_repeat 1 361 0 254 323 10 0 chr11 342244 342343 -150441210 + (TCCA)n Simple_repeat Simple_repeat 1 100 0 655 271 60 35 chr11 342872 343156 -150440397 - L1MC4 LINE L1 -1 8041 7751 274 331 57 32 chr11 344244 344401 -150439152 + MIR SINE MIR 80 240 -22 218 273 0 0 chr11 346216 346271 -150437282 + L2 LINE L2 3259 3313 0 980 162 0 0 chr11 346442 346596 -150436957 + AluJb SINE Alu 147 300 -12 513 188 12 6 chr11 346642 346807 -150436746 + (TG)n Simple_repeat Simple_repeat 1 166 0 242 221 0 44 chr11 346811 346879 -150436674 + (TATG)n Simple_repeat Simple_repeat 4 68 0 346 240 17 17 chr11 346902 347081 -150436472 + (TG)n Simple_repeat Simple_repeat 2 180 0 461 225 17 6 chr11 347121 347299 -150436254 + (TG)n Simple_repeat Simple_repeat 1 180 0 562 183 25 18 chr11 347317 347760 -150435793 + (TG)n Simple_repeat Simple_repeat 1 446 0 288 279 66 20 chr11 348316 348513 -150435040 + L1MEc LINE L1 1277 1482 -4914 728 142 15 0 chr11 348755 348889 -150434664 - MER4D LTR ERV1 -13 890 755 773 197 0 15 chr11 348894 349031 -150434522 - AluJo SINE Alu -177 135 1 949 146 32 5 chr11 349031 349216 -150434337 - MER4D LTR ERV1 -133 739 550 989 51 0 0 chr11 349223 349340 -150434213 + AluSx SINE Alu 16 132 -180 383 277 0 43 chr11 349351 349445 -150434108 + L1MC4 LINE L1 6614 6703 -1339 * 386 240 0 62 chr11 349385 349481 -150434072 - L1MC4 LINE L1 -1339 6703 6614 * 423 251 4 24 chr11 349460 349586 -150433967 - L1MCa LINE L1 -1339 6983 1995 239 255 0 0 chr11 349590 349637 -150433916 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 1394 93 0 0 chr11 349637 349819 -150433734 + AluSx SINE Alu 123 304 -6 920 170 6 11 chr11 349846 350028 -150433525 - MER4D LTR ERV1 -463 409 229 428 221 71 0 chr11 350073 350213 -150433340 - MER4D LTR ERV1 -753 150 1 21 0 0 0 chr11 350495 350516 -150433037 + GC_rich Low_complexity Low_complexity 1 21 0 212 182 0 18 chr11 350536 350591 -150432962 + (CCCCG)n Simple_repeat Simple_repeat 5 58 0 312 296 29 48 chr11 352835 353041 -150430512 - L2 LINE L2 -822 2492 2291 301 189 0 95 chr11 359801 359970 -150423583 + CT-rich Low_complexity Low_complexity 3 155 0 312 163 0 56 chr11 359997 360157 -150423396 + (TCCA)n Simple_repeat Simple_repeat 2 152 0 234 0 0 0 chr11 360580 360606 -150422947 + (CTGGGG)n Simple_repeat Simple_repeat 3 28 0 22 70 0 0 chr11 365378 365421 -150418132 + GC_rich Low_complexity Low_complexity 1 43 0 399 333 6 6 chr11 368073 368238 -150415315 + (TG)n Simple_repeat Simple_repeat 2 166 0 276 275 18 0 chr11 368257 368428 -150415125 + (TG)n Simple_repeat Simple_repeat 1 174 0 374 326 17 11 chr11 368509 368687 -150414866 + (TG)n Simple_repeat Simple_repeat 2 180 0 268 278 17 6 chr11 368719 369084 -150414469 + (TG)n Simple_repeat Simple_repeat 1 369 0 224 280 222 0 chr11 369687 369777 -150413776 + MIR SINE MIR 29 137 -71 183 129 0 0 chr11 369888 369919 -150413634 + (TCCA)n Simple_repeat Simple_repeat 2 32 0 692 146 0 0 chr11 370609 370719 -150412834 + AluSg/x SINE Alu 200 309 -1 334 162 34 179 chr11 370719 370836 -150412717 + L1MD1 LINE L1 3185 3284 -2862 803 75 37 0 chr11 370845 370952 -150412601 - AluSq/x SINE Alu -201 111 1 1055 269 0 7 chr11 370954 371236 -150412317 + L1MC1 LINE L1 6039 6318 -15 1159 247 36 50 chr11 371257 371531 -150412022 + L1MD1 LINE L1 4397 4662 -1484 4829 35 0 9 chr11 371531 372102 -150411451 + L1PA5 LINE L1 5589 6154 0 1159 247 36 50 chr11 372102 372329 -150411224 + L1MD1 LINE L1 4662 4891 -1255 764 287 81 12 chr11 372335 372656 -150410897 - MLT1A1 LTR MaLR -17 348 6 515 246 16 26 chr11 372662 372853 -150410700 + L1MD1 LINE L1 4889 5077 -1069 778 227 68 0 chr11 373203 373410 -150410143 + L1M4b LINE L1 94 314 -6545 1557 197 34 151 chr11 373410 374081 -150409472 - LTR8A LTR ERV1 0 727 135 3059 188 85 26 chr11 374087 374955 -150408598 + LTR28 LTR ERV1 1 1020 0 392 232 0 42 chr11 374955 375049 -150408504 - LTR8 LTR ERV1 -572 119 30 2250 265 53 19 chr11 375063 375817 -150407736 + L1M4b LINE L1 311 1090 -5769 1164 220 39 16 chr11 375928 376237 -150407316 + L1MD1 LINE L1 5672 5987 -255 942 189 31 15 chr11 376244 376440 -150407113 + L1MD1 LINE L1 6044 6242 0 1309 303 69 9 chr11 376446 377023 -150406530 + L1MEc LINE L1 31 642 -5754 1183 22 0 0 chr11 377079 377213 -150406340 + AluY SINE Alu 1 134 -177 2494 58 0 0 chr11 377213 377521 -150406032 + AluY SINE Alu 1 308 -3 1082 247 164 0 chr11 377524 377897 -150405656 + L1MEc LINE L1 2673 3106 -3109 1017 199 11 5 chr11 377904 378090 -150405463 + AluJo SINE Alu 1 187 -125 973 305 74 41 chr11 378250 378316 -150405237 - L1MCc LINE L1 -4889 1534 1472 2216 117 0 0 chr11 378316 378624 -150404929 - AluSg SINE Alu -2 308 1 973 305 74 41 chr11 378624 379001 -150404552 - L1MCc LINE L1 -4951 1472 1067 2133 113 0 7 chr11 379001 379302 -150404251 - AluSg SINE Alu -11 299 1 973 305 74 41 chr11 379302 379398 -150404155 - L1MCc LINE L1 -5356 1067 976 273 214 0 18 chr11 379399 379455 -150404098 - L2 LINE L2 -1 3312 3258 21 0 0 0 chr11 379911 379932 -150403621 + AT_rich Low_complexity Low_complexity 1 21 0 2055 135 0 3 chr11 379945 380248 -150403305 + AluSq SINE Alu 1 302 -11 251 282 96 5 chr11 380261 380449 -150403104 + L1M4 LINE L1 4490 4694 -1452 314 340 105 0 chr11 380466 380628 -150402925 + L1M4 LINE L1 4640 4818 -1328 403 356 104 13 chr11 380913 381143 -150402410 + L1M4 LINE L1 5091 5341 -805 287 96 0 58 chr11 381503 381555 -150401998 - AluSp SINE Alu -134 169 121 845 145 8 0 chr11 381579 381703 -150401850 - AluSq/x SINE Alu -187 125 1 340 336 109 51 chr11 381823 381840 -150401713 - L1M4 LINE L1 -1949 4197 4182 2127 129 3 0 chr11 381840 382150 -150401403 - AluSx SINE Alu -1 311 1 340 336 109 51 chr11 382150 382444 -150401109 - L1M4 LINE L1 -1964 4182 3868 254 306 19 28 chr11 384223 384331 -150399222 - LTR16C LTR ERVL 0 491 385 510 226 30 0 chr11 384696 384829 -150398724 + GA-rich Low_complexity Low_complexity 2 138 0 504 168 0 0 chr11 384831 384932 -150398621 + (CAGAGA)n Simple_repeat Simple_repeat 2 102 0 1202 183 9 5 chr11 384944 385168 -150398385 - LTR55 LTR ERV -322 226 2 253 250 37 56 chr11 386989 387097 -150396456 + MLT1A1 LTR MaLR 51 156 -209 547 281 0 0 chr11 387109 387244 -150396309 - MLT-int LTR MaLR -1315 420 286 778 100 9 0 chr11 387245 387355 -150396198 + AluJb SINE Alu 1 111 -201 982 163 6 0 chr11 387440 387600 -150395953 + AluJb SINE Alu 135 295 -17 1030 202 59 29 chr11 387600 387872 -150395681 - MLT-int LTR MaLR -1440 295 16 617 234 24 0 chr11 387929 388096 -150395457 + MLT1A1 LTR MaLR 186 356 -9 1157 206 45 86 chr11 388611 388970 -150394583 + MLT2D LTR ERVL 21 364 -50 322 358 86 55 chr11 388999 389256 -150394297 - L1MC4 LINE L1 -1339 6703 6439 * 327 300 25 69 chr11 389099 389259 -150394294 + L1MCa LINE L1 1915 2067 -4359 25 23 0 23 chr11 389264 389283 -150394270 + AT_rich Low_complexity Low_complexity 1 19 -23 2091 117 3 0 chr11 389283 389573 -150393980 - AluSx SINE Alu -21 291 1 25 23 0 23 chr11 389573 389596 -150393957 + AT_rich Low_complexity Low_complexity 19 42 0 2225 56 40 10 chr11 391048 391403 -150392150 - AluY SINE Alu 0 364 1 207 0 0 0 chr11 391588 391611 -150391942 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 373 187 107 0 chr11 391751 391901 -150391652 + (CACAC)n Simple_repeat Simple_repeat 5 170 0 290 133 107 0 chr11 391913 392063 -150391490 + (CACAC)n Simple_repeat Simple_repeat 5 170 0 229 144 106 0 chr11 392111 392243 -150391310 + (CACAC)n Simple_repeat Simple_repeat 5 150 0 247 151 107 0 chr11 392255 392414 -150391139 + (CACAC)n Simple_repeat Simple_repeat 5 180 0 338 186 16 81 chr11 392442 392566 -150390987 + MLT2D LTR ERVL 293 408 -6 479 143 0 20 chr11 393640 393738 -150389815 + LTR52 LTR ERVL 1 96 -325 381 248 48 0 chr11 393864 393989 -150389564 + LTR52 LTR ERVL 288 418 -3 2124 117 0 0 chr11 393997 394325 -150389228 - AluSx SINE Alu 0 312 1 21 57 0 0 chr11 396074 396109 -150387444 + GC_rich Low_complexity Low_complexity 1 35 0 572 167 0 16 chr11 398325 398451 -150385102 + CT-rich Low_complexity Low_complexity 4 127 0 1335 293 47 11 chr11 398469 398911 -150384642 - L1MB3 LINE L1 -28 6155 5688 1474 221 168 20 chr11 398911 399309 -150384244 - MSTB2 LTR MaLR 0 457 1 1335 293 47 11 chr11 399309 399415 -150384138 - L1MB3 LINE L1 -495 5688 5587 295 329 16 36 chr11 399448 399700 -150383853 + MLT1J LTR MaLR 232 478 -33 181 291 87 19 chr11 402886 402989 -150380564 + L2 LINE L2 3161 3270 -2 26 0 0 0 chr11 404484 404510 -150379043 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 404670 404692 -150378861 + GC_rich Low_complexity Low_complexity 1 22 0 256 348 39 0 chr11 405716 405855 -150377698 - MIR SINE MIR -60 148 43 286 293 69 0 chr11 406132 406248 -150377305 + MER45A DNA AcHobo 55 178 0 269 55 16 142 chr11 407018 407201 -150376352 + (TCCTG)n Simple_repeat Simple_repeat 5 164 0 201 75 0 149 chr11 407256 407457 -150376096 + (TCCTG)n Simple_repeat Simple_repeat 1 171 0 284 85 0 144 chr11 407493 407611 -150375942 + (TCCTG)n Simple_repeat Simple_repeat 1 101 0 1177 227 70 23 chr11 407829 408217 -150375336 + MLT1C LTR MaLR 61 466 -1 210 37 0 0 chr11 409451 409478 -150374075 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3374 98 31 2 chr11 409478 409955 -150373598 - L1PA13 LINE L1 -13 6150 5660 1226 169 0 49 chr11 409955 410144 -150373409 + L1P LINE L1 3758 3932 -2214 2179 93 0 35 chr11 410144 410338 -150373215 - AluSx SINE Alu -11 301 121 2435 66 0 10 chr11 410338 410641 -150372912 - AluY SINE Alu -10 301 2 2179 93 0 35 chr11 410641 410758 -150372795 - AluSx SINE Alu -191 121 1 1226 169 0 49 chr11 410758 410834 -150372719 + L1P LINE L1 3932 4010 -2136 201 353 88 24 chr11 411005 411175 -150372378 - MIR SINE MIR -68 194 14 784 282 60 19 chr11 412071 412387 -150371166 - L1ME3A LINE L1 -6 6164 5836 347 328 33 61 chr11 412454 412634 -150370919 + L1MEd LINE L1 649 823 -5707 629 323 37 21 chr11 412650 413025 -150370528 + L1MEd LINE L1 780 1160 -5370 347 306 153 0 chr11 413179 413323 -150370230 + L1MEd LINE L1 2077 2242 -4298 981 278 65 10 chr11 413411 413796 -150369757 + L1MEd LINE L1 3563 3968 -2572 332 239 0 0 chr11 413847 413914 -150369639 + L1M4 LINE L1 3130 3196 -2950 8097 68 12 4 chr11 415457 416456 -150367097 - LTR13 LTR ERVK 0 1007 1 232 105 0 58 chr11 417773 417859 -150365694 + (GGGTG)n Simple_repeat Simple_repeat 5 85 0 380 156 0 39 chr11 417892 418071 -150365482 + (GGGTG)n Simple_repeat Simple_repeat 1 172 0 301 304 65 0 chr11 418218 418356 -150365197 + MER90 LTR ERV1 103 249 -326 227 264 214 0 chr11 418401 418583 -150364970 + MER90 LTR ERV1 344 564 -11 369 313 23 23 chr11 419620 419751 -150363802 - L2 LINE L2 -3 3310 3180 1901 133 59 0 chr11 420738 421024 -150362529 - AluSq SINE Alu -10 303 1 1802 200 99 16 chr11 421274 421310 -150362243 - MER45R DNA AcHobo -39 1542 1510 1980 157 0 0 chr11 421310 421615 -150361938 + AluSg SINE Alu 1 305 -5 1802 200 99 16 chr11 421615 422142 -150361411 - MER45R DNA AcHobo -71 1510 932 1976 223 80 62 chr11 422142 422271 -150361282 - L1MC3 LINE L1 -21 7764 7639 1986 116 4 0 chr11 422271 422548 -150361005 + AluSx SINE Alu 1 278 -34 207 0 0 0 chr11 422554 422577 -150360976 + (CTAAA)n Simple_repeat Simple_repeat 3 25 0 1976 223 80 62 chr11 422577 422588 -150360965 - L1MC3 LINE L1 -150 7635 7626 2177 127 0 0 chr11 422588 422896 -150360657 + AluSx SINE Alu 1 308 -4 1976 223 80 62 chr11 422896 423459 -150360094 - L1MC3 LINE L1 -159 7626 7040 808 153 0 0 chr11 423459 423583 -150359970 - AluSg/x SINE Alu 0 312 189 947 175 24 101 chr11 423583 423921 -150359632 - L1MC3 LINE L1 -742 7043 6732 2824 148 18 4 chr11 423964 424478 -150359075 + LTR43 LTR ERV1 1 521 -81 723 119 90 0 chr11 424468 424602 -150358951 + MER51B LTR ERV1 229 374 -3 * 947 217 83 0 chr11 425235 425475 -150358078 - MLT1C LTR MaLR 0 467 208 2619 153 12 12 chr11 425475 425892 -150357661 + L1PA15 LINE L1 5744 6160 -5 244 204 0 0 chr11 428255 428304 -150355249 - MER53 DNA DNA 0 189 141 24 32 0 0 chr11 429463 429494 -150354059 + AT_rich Low_complexity Low_complexity 1 31 0 216 86 0 0 chr11 430062 430097 -150353456 + (TC)n Simple_repeat Simple_repeat 1 35 0 423 239 193 6 chr11 430097 430273 -150353280 + MLT1F LTR MaLR 170 378 -164 2073 142 0 3 chr11 430329 430640 -150352913 + AluJo SINE Alu 1 310 -2 245 392 0 0 chr11 430757 430877 -150352676 + L1M4 LINE L1 3797 3916 -2230 383 323 63 67 chr11 431137 431360 -150352193 + L1MC5 LINE L1 2176 2397 -4029 1673 151 33 27 chr11 431463 431800 -150351753 - MER1B DNA MER1_type 0 339 1 642 371 80 42 chr11 431988 432602 -150350951 - HAL1b LINE L1 -656 692 56 2103 129 0 3 chr11 432750 433061 -150350492 + AluSx SINE Alu 1 310 -2 2554 42 0 10 chr11 433772 434085 -150349468 - AluY SINE Alu -1 310 1 2452 70 0 0 chr11 434296 434596 -150348957 - AluY SINE Alu -11 300 1 225 197 128 0 chr11 435339 435456 -150348097 + (CTGGGG)n Simple_repeat Simple_repeat 5 136 0 1696 62 0 22 chr11 436404 436629 -150346924 - AluY SINE Alu -7 304 85 656 217 96 28 chr11 437039 437355 -150346198 + L1MC5 LINE L1 3176 7483 -758 655 292 13 14 chr11 437474 437794 -150345759 + MLT1I LTR MaLR 53 405 -4 2367 77 0 22 chr11 438173 438485 -150345068 - AluY SINE Alu -6 305 1 1408 81 0 41 chr11 439513 439710 -150343843 + AluY SINE Alu 106 294 -17 1673 177 0 4 chr11 439726 440024 -150343529 + AluJo SINE Alu 13 309 0 821 152 0 22 chr11 440062 440200 -150343353 - FLAM_A SINE Alu 0 142 8 372 235 61 0 chr11 440373 440471 -150343082 + MLT2B1 LTR ERVL 383 486 -34 354 188 0 0 chr11 440504 440605 -150342948 + (TATG)n Simple_repeat Simple_repeat 2 102 0 675 174 0 0 chr11 440633 440811 -150342742 + (TATG)n Simple_repeat Simple_repeat 3 180 0 216 0 0 0 chr11 440812 440836 -150342717 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 844 289 222 0 chr11 440865 441284 -150342269 + L2 LINE L2 2038 2549 -765 3129 197 76 54 chr11 441427 442431 -150341122 - L1MD1 LINE L1 0 6242 5221 1586 205 20 0 chr11 442449 442752 -150340801 - AluJb SINE Alu 0 312 4 340 177 0 0 chr11 442901 442963 -150340590 + MLT1I LTR MaLR 347 408 -1 299 162 0 29 chr11 443037 443081 -150340472 - MLT2B1 LTR ERVL 0 520 477 182 88 0 29 chr11 443081 443115 -150340438 + (TAGA)n Simple_repeat Simple_repeat 1 33 0 299 162 0 29 chr11 443115 443138 -150340415 - MLT2B1 LTR ERVL -43 477 455 209 111 28 0 chr11 443140 443176 -150340377 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 301 145 53 92 chr11 443177 443253 -150340300 + L1MC3 LINE L1 6571 6643 -1142 920 128 7 0 chr11 443255 443527 -150340026 + (TAGA)n Simple_repeat Simple_repeat 1 274 0 1654 189 126 2 chr11 443549 443977 -150339576 - MLT2B1 LTR ERVL -39 481 1 996 280 106 29 chr11 444404 444679 -150338874 + L1ME2 LINE L1 4607 4859 -1287 216 0 0 0 chr11 444679 444703 -150338850 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2067 117 4 0 chr11 444706 444989 -150338564 - AluSx SINE Alu -30 282 1 996 280 106 29 chr11 444989 445305 -150338248 + L1ME2 LINE L1 4860 5248 -898 256 174 14 14 chr11 445305 445374 -150338179 + (TA)n Simple_repeat Simple_repeat 2 70 0 1209 292 49 17 chr11 445398 445929 -150337624 + L1ME2 LINE L1 5254 5801 -363 2034 172 86 21 chr11 445945 446376 -150337177 + LTR2B LTR ERV1 32 490 0 1226 104 21 16 chr11 446394 446587 -150336966 + AluJb SINE Alu 117 310 -2 460 276 163 9 chr11 446621 446842 -150336711 + L1ME2 LINE L1 5873 6127 -37 634 109 0 0 chr11 446842 446943 -150336610 + FRAM SINE Alu 66 166 -10 2164 106 18 0 chr11 446949 447232 -150336321 + AluSx SINE Alu 3 290 -22 25 40 0 20 chr11 447260 447280 -150336273 + AT_rich Low_complexity Low_complexity 1 20 -29 2227 115 0 7 chr11 447280 447575 -150335978 + AluSq SINE Alu 1 293 -20 25 40 0 20 chr11 447575 447604 -150335949 + AT_rich Low_complexity Low_complexity 20 49 0 205 186 0 0 chr11 447951 447994 -150335559 + T-rich Low_complexity Low_complexity 2 44 0 202 361 0 0 chr11 448919 449088 -150334465 + (CTG)n Simple_repeat Simple_repeat 3 171 0 1250 125 0 0 chr11 449818 449986 -150333567 - AluSg SINE Alu -142 168 1 2673 58 0 0 chr11 450290 450601 -150332952 + AluY SINE Alu 1 311 0 2323 99 0 10 chr11 450944 451257 -150332296 + AluY SINE Alu 1 310 -1 276 186 12 23 chr11 452285 452371 -150331182 + GA-rich Low_complexity Low_complexity 2 86 0 244 333 14 0 chr11 452569 452641 -150330912 - LTR40c LTR ERVL 0 465 393 345 270 107 6 chr11 454653 454812 -150328741 + L1MD2 LINE L1 4597 4771 -1375 715 154 8 15 chr11 454824 454954 -150328599 + FLAM_C SINE Alu 5 133 0 22 0 0 0 chr11 454954 454976 -150328577 + AT_rich Low_complexity Low_complexity 1 22 0 2324 113 3 0 chr11 455193 455504 -150328049 + AluSx SINE Alu 1 312 0 1119 144 0 28 chr11 455504 455684 -150327869 + AluSg/x SINE Alu 132 306 -4 2392 262 72 43 chr11 455686 456903 -150326650 + L1MD2 LINE L1 4982 6234 -8 243 287 87 9 chr11 456926 457041 -150326512 + L1MC4a LINE L1 5895 6018 -1790 23 33 0 0 chr11 457090 457120 -150326433 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr11 457791 457826 -150325727 + GC_rich Low_complexity Low_complexity 1 35 0 409 218 26 13 chr11 460254 460410 -150323143 + CT-rich Low_complexity Low_complexity 2 159 0 378 305 142 4 chr11 460519 460758 -150322795 - L1M4 LINE L1 -1559 4587 4316 * 2877 236 61 37 chr11 460753 461622 -150321931 - L1MB8 LINE L1 -1 6177 5288 2206 300 103 3 chr11 461621 461761 -150321792 - L1M4 LINE L1 -1818 4328 4203 * 189 0 0 0 chr11 461761 461782 -150321771 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2206 300 103 3 chr11 461782 462660 -150320893 - L1M4 LINE L1 -1943 4203 3208 189 0 0 0 chr11 463005 463026 -150320527 + (CA)n Simple_repeat Simple_repeat 2 22 0 348 301 68 37 chr11 463699 463862 -150319691 + L1M4 LINE L1 2760 2927 -3219 1831 264 58 72 chr11 463960 465091 -150318462 - L1M4 LINE L1 -800 5346 4232 429 334 17 16 chr11 465062 465375 -150318178 - L1MDb LINE L1 -5007 1580 1228 * 538 113 0 0 chr11 465435 465515 -150318038 - AluJ/FRAM SINE Alu -17 295 216 4013 249 32 7 chr11 465617 466758 -150316795 + L1M4 LINE L1 3222 4391 -1755 24 53 0 0 chr11 466891 466929 -150316624 + AT_rich Low_complexity Low_complexity 1 38 0 1502 156 81 0 chr11 466975 467282 -150316271 - MER44D DNA MER2_type -3 606 5 23 33 0 0 chr11 467283 467313 -150316240 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 467451 467479 -150316074 + AT_rich Low_complexity Low_complexity 1 28 0 2241 99 0 3 chr11 467724 468008 -150315545 + AluSc SINE Alu 1 283 -26 342 0 0 0 chr11 468016 468054 -150315499 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1770 141 24 24 chr11 468307 468480 -150315073 - L1MC/D LINE L1 -772 5587 5412 2509 206 55 67 chr11 468480 469207 -150314346 - MER72 LTR ERV1 0 722 5 1770 141 24 24 chr11 469207 469367 -150314186 - L1MC/D LINE L1 -946 5413 5254 1903 260 43 17 chr11 469819 470523 -150313030 + L1M4 LINE L1 2685 3406 -2740 2583 124 142 0 chr11 470626 471071 -150312482 + Tigger3(Golem) DNA MER2_type 2520 3027 -2 184 304 69 0 chr11 472476 472578 -150310975 - MIR SINE MIR -127 135 27 2060 120 10 20 chr11 473098 473399 -150310154 - AluJb SINE Alu -14 298 1 2384 106 0 0 chr11 473716 474017 -150309536 - AluY SINE Alu -10 301 1 919 146 22 6 chr11 474607 474785 -150308768 + L1MB4 LINE L1 5994 6174 -6 563 230 0 24 chr11 474807 474933 -150308620 + FLAM_C SINE Alu 1 123 -10 2421 71 3 0 chr11 474942 475236 -150308317 + AluY SINE Alu 1 295 -16 21 36 0 0 chr11 476945 476973 -150306580 + AT_rich Low_complexity Low_complexity 1 28 0 2222 122 3 0 chr11 477007 477301 -150306252 - AluSx SINE Alu -15 297 3 1007 125 0 0 chr11 477302 477438 -150306115 - AluSq/x SINE Alu -176 136 1 2513 135 37 23 chr11 478316 478752 -150304801 + MER83 LTR ERV1 1 442 -6 320 310 99 0 chr11 478752 478894 -150304659 + L1MC/D LINE L1 5443 5598 -2210 1938 234 23 41 chr11 479569 479673 -150303880 - L1MA9 LINE L1 -37 6275 6171 180 0 0 0 chr11 479673 479693 -150303860 + (TC)n Simple_repeat Simple_repeat 2 21 0 1938 234 23 41 chr11 479693 480100 -150303453 - L1MA9 LINE L1 -141 6171 5773 297 217 0 0 chr11 480097 480157 -150303396 + L1MA9 LINE L1 5933 5992 -320 * 2527 70 0 3 chr11 480379 480691 -150302862 - AluY SINE Alu 0 311 1 466 220 46 0 chr11 480691 480800 -150302753 + MLT1A2 LTR MaLR 260 373 -1 369 0 0 0 chr11 481022 481063 -150302490 + (TG)n Simple_repeat Simple_repeat 1 41 0 227 295 54 6 chr11 482329 482495 -150301058 - L1MEc LINE L1 -4092 2515 2342 1994 157 3 6 chr11 482754 483066 -150300487 - AluJo SINE Alu -1 311 1 982 166 0 13 chr11 483426 483583 -150299970 - FRAM SINE Alu -22 154 1 1911 154 71 6 chr11 487088 487439 -150296114 - MSTB LTR MaLR 0 426 53 4010 137 4 46 chr11 487439 488291 -150295262 + L1PA16 LINE L1 5372 6161 -2 433 248 6 31 chr11 488287 488448 -150295105 - L1M4 LINE L1 -864 5282 5126 * 348 307 0 0 chr11 489740 489890 -150293663 + (CA)n Simple_repeat Simple_repeat 2 151 0 21 89 0 0 chr11 491954 492010 -150291543 + GC_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr11 492116 492148 -150291405 + GC_rich Low_complexity Low_complexity 1 32 0 37 97 0 0 chr11 492194 492308 -150291245 + GC_rich Low_complexity Low_complexity 1 114 0 207 139 0 0 chr11 492308 492344 -150291209 + (CCG)n Simple_repeat Simple_repeat 3 38 0 27 96 0 0 chr11 492358 492441 -150291112 + GC_rich Low_complexity Low_complexity 1 83 0 216 0 0 0 chr11 495082 495106 -150288447 + (CTGGGG)n Simple_repeat Simple_repeat 6 29 0 2123 113 0 0 chr11 495555 495838 -150287715 + AluSx SINE Alu 1 283 -29 302 241 17 0 chr11 495842 495900 -150287653 + L1MCa LINE L1 2006 2064 -4362 * 432 223 10 26 chr11 495860 495963 -150287590 - L1MEc LINE L1 -1339 6983 1995 348 293 38 0 chr11 495942 496048 -150287505 - L1MEc LINE L1 -4358 2068 1959 * 309 348 11 0 chr11 495991 496080 -150287473 + L1MC4 LINE L1 6614 6703 -1339 * 827 193 13 13 chr11 496083 496233 -150287320 - AluJb SINE Alu -23 289 140 226 344 98 8 chr11 496886 497008 -150286545 + L2 LINE L2 2917 3049 -223 183 339 31 0 chr11 497610 497675 -150285878 + MIR SINE MIR 18 84 -124 193 279 136 61 chr11 497725 497872 -150285681 + MER5A DNA MER1_type 5 162 -27 * 245 323 114 0 chr11 497756 497897 -150285656 - MER5A DNA MER1_type -22 167 1 237 59 0 0 chr11 498202 498236 -150285317 + MLT1C LTR MaLR 107 140 -327 308 194 74 19 chr11 498262 498370 -150285183 + MLT1C LTR MaLR 302 415 -52 608 38 0 12 chr11 498374 498454 -150285099 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 2007 132 0 3 chr11 498457 498761 -150284792 - AluSx SINE Alu -3 309 7 21 36 0 0 chr11 500139 500167 -150283386 + GC_rich Low_complexity Low_complexity 1 28 0 2096 80 21 11 chr11 501858 502145 -150281408 + AluSq SINE Alu 8 297 -16 781 187 42 37 chr11 502152 502366 -150281187 + L1MB3 LINE L1 5967 6181 -2 183 80 0 0 chr11 502916 502941 -150280612 + (CCGAG)n Simple_repeat Simple_repeat 5 29 0 21 89 0 0 chr11 504887 504943 -150278610 + GC_rich Low_complexity Low_complexity 1 56 0 341 236 7 0 chr11 505124 505272 -150278281 + (CA)n Simple_repeat Simple_repeat 1 149 0 366 252 78 9 chr11 505277 505392 -150278161 + L1MA9 LINE L1 6152 6274 -38 285 263 93 85 chr11 506073 506320 -150277233 + SN5 Other centromeric 1 249 -206 367 74 19 0 chr11 506617 506671 -150276882 + L1MC1 LINE L1 6276 6330 -3 404 340 28 49 chr11 506695 506942 -150276611 - L3 LINE CR1 -541 1036 795 1363 97 5 0 chr11 507135 507364 -150276189 - AluSg/x SINE Alu 0 324 95 279 277 29 36 chr11 507618 507755 -150275798 + MLT1A2 LTR MaLR 239 374 0 787 198 74 33 chr11 507961 508204 -150275349 + MLT1B LTR MaLR 8 260 -130 506 236 202 55 chr11 508514 508806 -150274747 - MLT1J LTR MaLR -141 370 36 224 224 0 20 chr11 508807 508856 -150274697 + GA-rich Low_complexity Low_complexity 4 51 0 2023 122 28 0 chr11 509024 509312 -150274241 - AluSq SINE Alu -17 296 1 2040 116 41 0 chr11 509312 509605 -150273948 - AluSx SINE Alu -7 305 1 325 282 30 0 chr11 510018 510120 -150273433 - MIR SINE MIR -63 145 50 658 109 0 0 chr11 510535 510627 -150272926 - AluSp/q SINE Alu -12 301 210 243 0 0 0 chr11 511148 511175 -150272378 + (CAG)n Simple_repeat Simple_repeat 2 28 0 234 355 0 0 chr11 511340 511433 -150272120 - MLT1J LTR MaLR -77 434 342 381 246 131 0 chr11 511752 511882 -150271671 + LTR67 LTR ERVL 410 556 -1 1211 190 5 0 chr11 512230 512441 -150271112 + AluJo SINE Alu 1 212 -100 255 61 0 0 chr11 513442 513475 -150270078 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 671 276 24 68 chr11 513577 513791 -150269762 + L1M4 LINE L1 3106 3309 -2837 2144 139 0 0 chr11 513791 514101 -150269452 + AluSx SINE Alu 1 310 -2 671 276 24 68 chr11 514101 514136 -150269417 + L1M4 LINE L1 3309 3344 -2802 782 156 57 28 chr11 514199 514340 -150269213 + FAM SINE Alu 24 168 -17 941 101 7 0 chr11 514410 514549 -150269004 + AluSg/x SINE Alu 172 311 -1 1964 100 47 0 chr11 514567 514846 -150268707 + AluSg SINE Alu 1 292 -18 1741 128 0 0 chr11 514896 515139 -150268414 + AluSx SINE Alu 1 243 -69 1214 127 0 0 chr11 519038 519211 -150264342 + AluSp SINE Alu 130 302 -11 246 319 104 21 chr11 519522 519666 -150263887 - L1MEc LINE L1 -1892 5049 4894 688 261 55 25 chr11 520128 520475 -150263078 - L1MEc LINE L1 -3597 3344 2984 2226 120 0 3 chr11 520475 520783 -150262770 - AluSx SINE Alu -5 307 1 688 261 55 25 chr11 520783 520799 -150262754 - L1MEc LINE L1 -3957 2984 2970 484 330 35 40 chr11 520818 520856 -150262697 - L1MEc LINE L1 -4313 2809 2772 1817 185 0 0 chr11 520856 521153 -150262400 - AluJb SINE Alu -11 301 5 484 330 35 40 chr11 521153 521314 -150262239 - L1MEc LINE L1 -4350 2772 2611 2004 126 0 32 chr11 521318 521487 -150262066 - AluSg SINE Alu -10 300 144 2200 96 10 3 chr11 521487 521789 -150261764 - AluSq SINE Alu -9 304 1 2004 126 0 32 chr11 521789 521929 -150261624 - AluSg SINE Alu -166 144 1 1102 79 0 0 chr11 521932 522071 -150261482 - AluSq/x SINE Alu -174 139 1 238 305 30 8 chr11 522072 522203 -150261350 - L1MEc LINE L1 -4969 1454 1321 27 49 0 0 chr11 528128 528169 -150255384 + GC_rich Low_complexity Low_complexity 1 41 0 22 70 0 0 chr11 528288 528331 -150255222 + GC_rich Low_complexity Low_complexity 1 43 0 43 47 0 0 chr11 528415 528479 -150255074 + GC_rich Low_complexity Low_complexity 1 64 0 26 64 0 0 chr11 528545 528592 -150254961 + GC_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr11 528696 528717 -150254836 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr11 530647 530689 -150252864 + AT_rich Low_complexity Low_complexity 1 42 0 2179 116 0 3 chr11 531849 532151 -150251402 - AluSx SINE Alu -11 301 1 3505 107 23 16 chr11 583354 583926 -150199627 - THE1B-int LTR MaLR -93 1487 912 1243 106 98 25 chr11 583916 584161 -150199392 - THE1B-int LTR MaLR -1317 263 1 * 609 34 22 11 chr11 584161 584250 -150199303 - THE1B LTR MaLR 0 364 275 21 82 0 0 chr11 586852 586901 -150196652 + GC_rich Low_complexity Low_complexity 1 49 0 243 88 0 0 chr11 587185 587219 -150196334 + (A)n Simple_repeat Simple_repeat 1 34 0 220 262 0 0 chr11 587219 587261 -150196292 + polypurine Low_complexity Low_complexity 3 44 0 241 246 18 61 chr11 588282 588396 -150195157 + G-rich Low_complexity Low_complexity 4 112 0 265 202 238 0 chr11 593307 593391 -150190162 - L2 LINE L2 -1 3271 3168 420 335 148 32 chr11 593601 594133 -150189420 - L2 LINE L2 -462 2852 2259 379 371 38 3 chr11 594656 594814 -150188739 - L1M4 LINE L1 -773 5373 5222 1395 149 134 4 chr11 594814 594964 -150188589 - AluJo SINE Alu -16 296 167 197 0 71 0 chr11 594964 594992 -150188561 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1395 149 134 4 chr11 594992 595103 -150188450 - AluJo SINE Alu -145 167 1 379 371 38 3 chr11 595103 595257 -150188296 - L1M4 LINE L1 -924 5222 5050 481 170 211 55 chr11 595259 595477 -150188076 - Charlie5 DNA MER1_type -27 2585 2334 295 269 59 25 chr11 595531 595650 -150187903 - L1M4 LINE L1 -1127 5019 4897 396 367 37 21 chr11 595651 595839 -150187714 - L1M4 LINE L1 -2865 3281 3091 532 265 76 5 chr11 595885 596070 -150187483 - L1M4 LINE L1 -3167 2979 2782 2232 72 0 7 chr11 599238 599557 -150183996 - AluY SINE Alu 0 311 1 1298 181 15 34 chr11 600072 600338 -150183215 - AluJo SINE Alu -22 290 30 222 167 0 51 chr11 605427 605505 -150178048 + (CCCTAA)n Simple_repeat Simple_repeat 1 74 0 319 247 6 39 chr11 605901 606126 -150177427 + (CCCCG)n Simple_repeat Simple_repeat 1 217 0 225 143 41 0 chr11 607970 608019 -150175534 + A-rich Low_complexity Low_complexity 5 55 0 1046 168 7 5 chr11 612033 612454 -150171099 + (CAGCC)n Simple_repeat Simple_repeat 1 422 0 240 257 0 40 chr11 613568 613669 -150169884 + G-rich Low_complexity Low_complexity 3 99 0 222 230 11 46 chr11 613747 613834 -150169719 + G-rich Low_complexity Low_complexity 3 86 0 240 255 205 0 chr11 622851 623012 -150160541 + MLT1F LTR MaLR 246 439 -103 255 277 50 25 chr11 624076 624195 -150159358 + MLT1B LTR MaLR 1 122 -504 275 221 101 0 chr11 624534 624639 -150158914 + MLT1B LTR MaLR 252 337 -53 180 0 0 0 chr11 626067 626087 -150157466 + (GGCTG)n Simple_repeat Simple_repeat 2 21 0 248 229 82 0 chr11 628445 628506 -150155047 + MLT1I LTR MaLR 113 178 -231 233 183 17 0 chr11 629767 629827 -150153726 + (TG)n Simple_repeat Simple_repeat 1 61 0 2123 77 24 30 chr11 630646 630943 -150152610 + AluY SINE Alu 1 295 -16 275 242 10 0 chr11 631348 631447 -150152106 + (TG)n Simple_repeat Simple_repeat 1 100 0 258 183 0 0 chr11 633212 633283 -150150270 + (TG)n Simple_repeat Simple_repeat 1 71 0 294 282 0 0 chr11 633371 633541 -150150012 + (TG)n Simple_repeat Simple_repeat 2 171 0 330 337 70 11 chr11 636809 636996 -150146557 - L2 LINE L2 -155 3117 2920 182 188 0 0 chr11 637349 637381 -150146172 + MIR SINE MIR 118 149 -113 421 325 0 13 chr11 637604 637761 -150145792 + (TG)n Simple_repeat Simple_repeat 1 155 0 379 272 4 27 chr11 637808 638351 -150145202 + (TG)n Simple_repeat Simple_repeat 1 530 0 375 303 27 0 chr11 642537 642880 -150140673 + G-rich Low_complexity Low_complexity 1 352 0 261 328 48 42 chr11 646568 646757 -150136796 + MLT1D LTR MaLR 3 192 -313 467 190 146 0 chr11 646945 647082 -150136471 + MLT1D-int LTR MaLR 1 157 -1214 1199 195 42 4 chr11 647951 648192 -150135361 - AluJo SINE Alu -32 280 31 493 238 20 137 chr11 648211 648510 -150135043 + MLT1D-int LTR MaLR 1084 1347 -24 348 254 215 52 chr11 648564 648969 -150134584 + MLT1D LTR MaLR 30 500 -5 470 197 55 24 chr11 650616 650743 -150132810 + MER20 DNA MER1_type 1 131 -88 246 192 0 0 chr11 651391 651443 -150132110 + (CACG)n Simple_repeat Simple_repeat 1 52 0 2016 132 3 10 chr11 651641 651945 -150131608 - AluSx SINE Alu -10 302 1 468 272 99 47 chr11 651945 652158 -150131395 + HAL1 LINE L1 943 1166 -1341 252 86 0 0 chr11 652560 652595 -150130958 + (CAAT)n Simple_repeat Simple_repeat 4 38 0 226 335 52 26 chr11 652731 652961 -150130592 + L1MCc LINE L1 1176 1411 -5012 452 328 129 49 chr11 654110 654395 -150129158 + L1MCc LINE L1 1670 1931 -5088 2191 110 0 0 chr11 654395 654695 -150128858 - AluSg SINE Alu -10 300 1 452 328 129 49 chr11 654695 655048 -150128505 + L1MCc LINE L1 1931 2399 -4620 348 228 44 9 chr11 655324 655438 -150128115 - Charlie1 DNA MER1_type -21 2740 2623 511 176 12 0 chr11 656061 656146 -150127407 + AluJb SINE Alu 208 293 -19 573 329 54 0 chr11 656155 656177 -150127376 + L1MB5 LINE L1 5587 5606 -568 2409 70 0 0 chr11 656177 656476 -150127077 + AluY SINE Alu 1 299 -12 573 329 54 0 chr11 656476 656788 -150126765 + L1MB5 LINE L1 5606 5939 -235 470 188 152 0 chr11 656852 656964 -150126589 + L1MB5 LINE L1 6039 6167 -7 396 212 212 44 chr11 656967 657170 -150126383 + MER97b DNA MER1_type? 106 342 -711 350 282 39 47 chr11 657332 657566 -150125987 + MER97a DNA MER1_type? 579 810 -84 343 273 68 74 chr11 664031 664207 -150119346 + L1ME4a LINE L1 5266 5440 -722 304 330 10 21 chr11 665129 665226 -150118327 + L1ME4a LINE L1 6026 6121 0 1223 142 16 0 chr11 665885 666068 -150117485 + AluJo SINE Alu 3 188 -124 441 251 139 0 chr11 666894 667109 -150116444 - HAL1 LINE L1 -800 1707 1463 465 209 25 2 chr11 667110 667229 -150116324 + MSTD LTR MaLR 1 129 -245 352 153 11 93 chr11 667230 667413 -150116140 + G-rich Low_complexity Low_complexity 5 172 0 720 218 225 11 chr11 667413 667684 -150115869 + MSTD LTR MaLR 65 393 -3 321 266 217 4 chr11 667702 667946 -150115607 - HAL1 LINE L1 -1046 1461 1166 338 331 65 22 chr11 668129 668268 -150115285 - HAL1 LINE L1 -1591 916 772 279 286 80 0 chr11 668298 668410 -150115143 + HAL1 LINE L1 1304 1424 -1083 368 289 81 0 chr11 668806 668979 -150114574 - HAL1 LINE L1 -2274 233 47 286 221 229 13 chr11 670351 670487 -150113066 + MIR SINE MIR 3 156 -52 262 247 49 37 chr11 672814 672895 -150110658 + L1M3 LINE L1 5716 5797 -366 291 295 62 18 chr11 673008 673120 -150110433 - MER5A DNA MER1_type -29 160 44 1706 176 70 0 chr11 673127 673497 -150110056 + MER57A LTR ERV1 8 403 0 901 193 85 27 chr11 674466 674689 -150108864 + AluJo SINE Alu 76 311 -1 417 250 34 45 chr11 675267 675443 -150108110 + L1MC4 LINE L1 7869 8042 0 478 365 55 41 chr11 675446 675791 -150107762 + L1MEc LINE L1 1448 1797 -4599 580 332 60 35 chr11 676176 676607 -150106946 - L1ME1 LINE L1 -192 5974 5533 812 181 18 10 chr11 677122 677359 -150106194 - L1ME1 LINE L1 -726 5436 5198 456 326 33 15 chr11 677489 677759 -150105794 - L1MEc LINE L1 -5334 1062 788 204 231 0 0 chr11 677780 677832 -150105721 + (CA)n Simple_repeat Simple_repeat 1 52 0 345 265 119 19 chr11 678208 678468 -150105085 - L1MC5 LINE L1 -177 7784 7499 308 305 53 0 chr11 678468 678563 -150104990 - L1MD3 LINE L1 -19 7976 7877 482 259 69 41 chr11 678657 678947 -150104606 - L1MC5 LINE L1 -467 7494 7197 496 202 33 47 chr11 678947 679109 -150104444 - MLT1A2 LTR MaLR -219 155 1 4285 260 101 39 chr11 679366 680787 -150102766 - L1ME2 LINE L1 0 6233 4901 2218 98 0 3 chr11 680787 681108 -150102445 + AluSq SINE Alu 1 313 0 4285 260 101 39 chr11 681108 682862 -150100691 - L1ME2 LINE L1 -1332 4901 3257 1764 136 35 3 chr11 682862 683149 -150100404 + AluSx SINE Alu 1 296 -16 4285 260 101 39 chr11 683149 683452 -150100101 - L1ME2 LINE L1 -2976 3257 649 304 384 50 28 chr11 683531 683854 -150099699 - L1ME2 LINE L1 -5831 565 236 273 329 67 6 chr11 683877 684041 -150099512 - L1ME2 LINE L1 -6222 174 1 2332 109 0 0 chr11 684159 684471 -150099082 - AluSq SINE Alu -1 312 1 283 285 41 0 chr11 684627 684799 -150098754 + (TG)n Simple_repeat Simple_repeat 2 180 0 * 307 275 17 28 chr11 684777 684955 -150098598 + (TCTCTG)n Simple_repeat Simple_repeat 1 176 0 * 380 246 47 0 chr11 684834 685005 -150098548 + (TG)n Simple_repeat Simple_repeat 2 180 0 793 251 45 30 chr11 685231 685498 -150098055 + L1MC3 LINE L1 6461 6731 -1054 1088 223 7 41 chr11 685518 685787 -150097766 - AluJo SINE Alu -52 260 1 1886 157 0 0 chr11 685817 686103 -150097450 - AluJo SINE Alu -26 286 1 2334 60 0 47 chr11 686104 686423 -150097130 - AluY SINE Alu -7 304 1 1723 294 42 6 chr11 686432 687082 -150096471 + L1MC3 LINE L1 6726 7398 -387 469 237 124 6 chr11 687087 687256 -150096297 + L1MC3 LINE L1 7589 7777 -8 217 329 0 0 chr11 690589 690674 -150092879 + (TG)n Simple_repeat Simple_repeat 1 85 0 216 200 0 0 chr11 691078 691123 -150092430 + (TG)n Simple_repeat Simple_repeat 1 45 0 254 159 29 87 chr11 691673 691742 -150091811 + MER5A DNA MER1_type 57 121 -68 196 151 55 0 chr11 694609 694682 -150088871 + C-rich Low_complexity Low_complexity 1 77 0 531 270 90 49 chr11 697586 697945 -150085608 + L1M4c LINE L1 1424 1897 -4643 247 293 55 24 chr11 698333 698497 -150085056 + L1M4c LINE L1 2365 2533 -4007 583 260 72 100 chr11 698569 698930 -150084623 - MLT1A1 LTR MaLR 0 365 15 1463 307 97 24 chr11 698964 700055 -150083498 + L1M4c LINE L1 2655 3825 -2715 256 159 48 0 chr11 700064 700127 -150083426 + L1M4c LINE L1 4527 4592 -1948 699 201 8 0 chr11 700142 700276 -150083277 + Tigger7 DNA MER2_type 32 166 -567 1400 202 148 24 chr11 700325 700751 -150082802 + Tigger7 DNA MER2_type 262 740 -1747 611 178 65 0 chr11 700778 700885 -150082668 + FLAM_A SINE Alu 2 115 -18 597 203 8 0 chr11 700909 701032 -150082521 + Tigger7 DNA MER2_type 2364 2487 0 1263 284 72 62 chr11 701078 702248 -150081305 + L1M4c LINE L1 4662 5848 -712 287 179 90 0 chr11 705956 706023 -150077530 + MER5A DNA MER1_type 17 89 -100 406 349 0 0 chr11 710053 710228 -150073325 + G-rich Low_complexity Low_complexity 2 176 0 25 102 0 0 chr11 715769 715857 -150067696 + GC_rich Low_complexity Low_complexity 1 88 0 38 96 0 0 chr11 715960 716075 -150067478 + GC_rich Low_complexity Low_complexity 1 115 0 25 51 0 0 chr11 716178 716217 -150067336 + GC_rich Low_complexity Low_complexity 1 39 0 206 168 67 34 chr11 716225 716344 -150067209 + (CCGCG)n Simple_repeat Simple_repeat 5 127 0 243 0 0 0 chr11 716429 716456 -150067097 + (CCG)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chr11 716457 716484 -150067069 + GC_rich Low_complexity Low_complexity 1 27 0 737 108 62 31 chr11 716509 716802 -150066751 + (CCGAG)n Simple_repeat Simple_repeat 1 302 0 1537 271 70 32 chr11 719031 719691 -150063862 + L1ME1 LINE L1 3504 4188 -1958 2260 56 7 3 chr11 719692 719999 -150063554 - AluY SINE Alu 0 311 9 333 393 94 0 chr11 720202 720403 -150063150 - L1 LINE L1 -1451 4695 4476 450 137 0 0 chr11 720405 720500 -150063053 + (TC)n Simple_repeat Simple_repeat 2 96 0 941 128 0 0 chr11 720602 720743 -150062810 + AluSp/q SINE Alu 165 305 -8 269 294 85 34 chr11 720748 720983 -150062570 + L1ME1 LINE L1 4225 4471 -1675 23 33 0 0 chr11 721026 721056 -150062497 + AT_rich Low_complexity Low_complexity 1 30 0 1479 182 0 62 chr11 721094 721207 -150062346 + AluJo SINE Alu 2 120 -192 1700 177 186 0 chr11 721207 721568 -150061985 + MSTA LTR MaLR 1 428 0 1479 182 0 62 chr11 721568 721761 -150061792 + AluJo SINE Alu 120 289 -23 1525 278 26 2 chr11 721787 722240 -150061313 + L1ME1 LINE L1 5511 5974 -192 207 0 0 0 chr11 722461 722484 -150061069 + (TGGG)n Simple_repeat Simple_repeat 2 24 0 2053 116 0 10 chr11 722564 722699 -150060854 + AluSx SINE Alu 1 136 -176 1899 72 35 88 chr11 722699 723017 -150060536 + AluY SINE Alu 1 301 -10 2053 116 0 10 chr11 723017 723183 -150060370 + AluSx SINE Alu 136 299 -13 209 288 30 0 chr11 725067 725133 -150058420 - MIR3 SINE MIR -53 155 88 338 226 60 38 chr11 725299 725432 -150058121 - L1ME4a LINE L1 -22 6099 5964 746 194 23 46 chr11 725475 725692 -150057861 - L1MB8 LINE L1 -3 6175 5964 2114 98 44 0 chr11 725696 725993 -150057560 - AluSx SINE Alu 0 312 3 1340 248 13 31 chr11 725996 726379 -150057174 - L1MB7 LINE L1 -46 6138 5763 4776 204 15 51 chr11 726401 726682 -150056871 - L1MB7 LINE L1 -1490 4656 4366 2450 77 0 0 chr11 726682 726993 -150056560 - AluY SINE Alu 0 311 1 4776 204 15 51 chr11 726993 727356 -150056197 - L1MB7 LINE L1 -1780 4366 3991 2413 70 0 3 chr11 727356 727657 -150055896 + AluY SINE Alu 1 300 -11 4776 204 15 51 chr11 727657 727698 -150055855 - L1MB7 LINE L1 -2155 3991 3950 2179 105 3 16 chr11 727698 728012 -150055541 + AluSg SINE Alu 1 310 0 4776 204 15 51 chr11 728012 728343 -150055210 - L1MB7 LINE L1 -2196 3950 3695 2218 84 10 26 chr11 728343 728654 -150054899 - AluSx SINE Alu -6 306 1 4776 204 15 51 chr11 728654 728968 -150054585 - L1MB7 LINE L1 -2451 3695 3371 458 287 191 19 chr11 729059 729388 -150054165 + L2 LINE L2 2644 3030 -283 2177 186 18 0 chr11 729389 729771 -150053782 - MLT1B LTR MaLR 0 390 2 1724 146 23 0 chr11 729785 730045 -150053508 - AluJb SINE Alu -46 266 1 359 293 168 22 chr11 730155 730376 -150053177 - L1M LINE L1 -733 5429 5177 1901 140 0 55 chr11 730404 730732 -150052821 - AluSx SINE Alu -2 310 1 1889 185 103 3 chr11 732049 732438 -150051115 - MSTA LTR MaLR 0 428 1 1691 113 9 118 chr11 733625 733954 -150049599 - AluJo SINE Alu -8 294 2 689 224 59 0 chr11 735318 735488 -150048065 + MLT1B LTR MaLR 5 184 -206 22 0 0 0 chr11 735490 735512 -150048041 + GC_rich Low_complexity Low_complexity 1 22 0 222 118 0 0 chr11 736726 736760 -150046793 + (TCC)n Simple_repeat Simple_repeat 2 35 0 1267 197 18 10 chr11 738519 738907 -150044646 + MER66B LTR ERV1 1 486 0 2263 94 0 3 chr11 739263 739562 -150043991 + AluY SINE Alu 1 298 -13 479 321 19 24 chr11 739612 739922 -150043631 - L1ME2 LINE L1 -2 6162 5852 4007 90 0 4 chr11 739952 740465 -150043088 + MER9 LTR ERVK 1 511 0 820 178 0 55 chr11 740545 740708 -150042845 - L1MB3 LINE L1 0 6183 6030 389 135 0 27 chr11 740716 740790 -150042763 - L1MB3 LINE L1 -82 6101 6030 393 135 0 27 chr11 740798 740872 -150042681 - L1MB3 LINE L1 -82 6101 6030 390 135 0 27 chr11 740880 740954 -150042599 - L1MB3 LINE L1 -82 6101 6030 439 108 0 27 chr11 740962 741036 -150042517 - L1MB3 LINE L1 -82 6101 6030 424 122 0 27 chr11 741044 741118 -150042435 - L1MB3 LINE L1 -82 6101 6030 1328 165 21 34 chr11 741126 741417 -150042136 - L1MB3 LINE L1 -82 6101 5815 1258 106 96 24 chr11 741445 741653 -150041900 - AluJo SINE Alu -75 237 15 405 125 42 0 chr11 741655 741727 -150041826 - L1MB3 LINE L1 -339 5832 5758 307 360 65 45 chr11 743378 743505 -150040048 + ERVL LTR ERVL 1575 1698 -4066 1696 191 57 17 chr11 743505 743856 -150039697 - MLT1A1 LTR MaLR 0 365 1 307 360 65 45 chr11 743856 744020 -150039533 + ERVL LTR ERVL 1698 1872 -3892 292 358 33 8 chr11 744060 744180 -150039373 - ERVL LTR ERVL -3757 2007 1885 2069 119 3 3 chr11 744205 744523 -150039030 - AluSx SINE Alu 0 312 1 1054 341 40 22 chr11 744534 745079 -150038474 + ERVL LTR ERVL 2383 2937 -2827 878 144 20 7 chr11 745088 745241 -150038312 + FRAM SINE Alu 1 154 -22 1076 337 76 6 chr11 745292 745767 -150037786 + ERVL LTR ERVL 2985 3492 -2272 785 353 43 26 chr11 745937 746401 -150037152 + ERVL LTR ERVL 3572 4043 -1721 707 304 130 9 chr11 746432 746856 -150036697 + ERVL LTR ERVL 4080 4554 -1100 2439 80 0 0 chr11 747329 747641 -150035912 - AluSx SINE Alu 0 312 1 231 36 0 0 chr11 747845 747873 -150035680 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1497 161 4 4 chr11 747877 748126 -150035427 - L1PB1 LINE L1 -8 6143 5895 393 284 104 61 chr11 748905 749218 -150034335 + L1M4 LINE L1 3852 4150 -1996 2368 67 0 13 chr11 749218 749533 -150034020 + AluY SINE Alu 1 311 0 393 284 104 61 chr11 749533 749854 -150033699 + L1M4 LINE L1 4150 4513 -1633 758 148 0 11 chr11 749858 750040 -150033513 + (GA)n Simple_repeat Simple_repeat 1 180 0 2564 30 0 7 chr11 750446 750751 -150032802 + AluYa5 SINE Alu 9 311 0 1066 160 6 0 chr11 750751 750926 -150032627 + AluJb SINE Alu 124 299 -13 2298 66 10 3 chr11 750949 751252 -150032301 + AluY SINE Alu 1 305 -6 415 247 113 21 chr11 751553 751739 -150031814 + MER63A DNA MER1_type 3 205 -5 839 234 147 7 chr11 752254 752561 -150030992 - MLT1A1 LTR MaLR -13 352 3 182 146 0 85 chr11 753328 753410 -150030143 + (TGGGGG)n Simple_repeat Simple_repeat 5 79 0 182 36 0 36 chr11 753479 753507 -150030046 + (TGGGGG)n Simple_repeat Simple_repeat 5 31 0 335 156 0 142 chr11 753534 753739 -150029814 + G-rich Low_complexity Low_complexity 5 180 0 2042 126 7 10 chr11 754660 754969 -150028584 + AluSx SINE Alu 5 312 0 262 289 53 0 chr11 754983 755059 -150028494 + L1MC/D LINE L1 5726 5805 -2003 281 287 204 12 chr11 755104 755271 -150028282 - MIR SINE MIR -1 261 63 356 149 96 64 chr11 757851 757945 -150025608 - LTR26 LTR ERV1 -253 350 254 2028 100 28 7 chr11 757945 758234 -150025319 - AluSx SINE Alu -17 295 1 229 269 45 0 chr11 758422 758489 -150025064 + L1M4 LINE L1 3913 3982 -2164 619 283 134 26 chr11 758543 758916 -150024637 - L1MD3 LINE L1 -827 6981 6613 200 273 45 45 chr11 759170 759346 -150024207 + C-rich Low_complexity Low_complexity 4 179 0 481 329 91 18 chr11 759622 759953 -150023600 - L1MC4a LINE L1 -1237 6571 6217 1793 191 48 5 chr11 759964 760029 -150023524 - Tigger2a DNA MER2_type -2276 432 371 1701 158 14 0 chr11 760029 760313 -150023240 - AluJo SINE Alu -24 288 1 1793 191 48 5 chr11 760313 760625 -150022928 - Tigger2a DNA MER2_type -2337 371 39 2250 79 0 16 chr11 760804 761109 -150022444 - AluY SINE Alu -11 300 1 521 290 17 34 chr11 761362 761538 -150022015 - HsTC2 DNA Tc2 -537 1361 1189 311 269 6 103 chr11 761758 761914 -150021639 + L1MB7 LINE L1 3857 3997 -2149 1097 192 96 69 chr11 762214 762510 -150021043 + MLT1B LTR MaLR 43 350 -40 2038 110 0 17 chr11 762510 762809 -150020744 - AluSx SINE Alu -18 294 1 1097 192 96 69 chr11 762809 762846 -150020707 + MLT1B LTR MaLR 350 385 -5 972 127 18 30 chr11 762929 763095 -150020458 + AluJb SINE Alu 129 292 -20 430 281 88 16 chr11 763142 763391 -150020162 + L1MB7 LINE L1 4304 4570 -1576 239 365 16 16 chr11 763548 763674 -150019879 - L1M4 LINE L1 -2286 3860 3735 405 245 0 0 chr11 764812 765109 -150018444 + (TG)n Simple_repeat Simple_repeat 1 297 0 363 233 0 0 chr11 765121 765297 -150018256 + (TG)n Simple_repeat Simple_repeat 2 177 0 196 196 0 21 chr11 765318 765415 -150018138 + (TG)n Simple_repeat Simple_repeat 2 96 0 262 257 0 20 chr11 765428 765529 -150018024 + (TG)n Simple_repeat Simple_repeat 1 99 0 191 268 107 27 chr11 765751 765863 -150017690 + L2 LINE L2 3193 3313 0 303 93 0 0 chr11 766021 766064 -150017489 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 2048 137 16 0 chr11 766069 766376 -150017177 - AluSx SINE Alu 0 312 1 332 206 41 0 chr11 766864 766937 -150016616 + MIR SINE MIR 70 145 -117 2134 184 78 42 chr11 767339 767710 -150015843 + L1MB7 LINE L1 4963 5319 -865 2248 75 7 7 chr11 767710 768005 -150015548 + AluY SINE Alu 1 295 -16 2134 184 78 42 chr11 768005 768467 -150015086 + L1MB7 LINE L1 5319 5825 -359 454 151 11 75 chr11 768471 768564 -150014989 + L1M3 LINE L1 5656 5742 -429 343 274 30 30 chr11 769266 769284 -150014269 - L1MA10 LINE L1 0 6334 6317 8921 240 53 42 chr11 769284 769491 -150014062 - L1ME1 LINE L1 -10 6225 6022 2519 91 81 37 chr11 769491 769900 -150013653 + MSTA LTR MaLR 1 427 -1 8921 240 53 42 chr11 769900 770478 -150013075 - L1ME1 LINE L1 -213 6022 5452 2174 109 0 13 chr11 770478 770782 -150012771 - AluSx SINE Alu -12 300 1 8921 240 53 42 chr11 770782 771290 -150012263 - L1ME1 LINE L1 -783 5452 4951 2406 183 17 19 chr11 771290 771711 -150011842 + L1MB2 LINE L1 5698 6119 -52 1244 167 89 60 chr11 771711 771993 -150011560 + AluJb SINE Alu 1 290 -22 2406 183 17 19 chr11 771993 772041 -150011512 + L1MB2 LINE L1 6119 6166 -5 8921 240 53 42 chr11 772041 772188 -150011365 - L1ME1 LINE L1 -1284 4951 4807 2243 108 0 9 chr11 772188 772503 -150011050 - AluSx SINE Alu 0 312 1 8921 240 53 42 chr11 772503 772747 -150010806 - L1ME1 LINE L1 -1428 4807 4567 1940 129 0 3 chr11 772747 773042 -150010511 - AluSx SINE Alu -18 294 1 8921 240 53 42 chr11 773042 775092 -150008461 - L1ME1 LINE L1 -1668 4567 2441 1577 247 62 5 chr11 775094 775499 -150008054 - L1ME1 LINE L1 -5785 611 184 2139 171 33 10 chr11 775599 776335 -150007218 + L1MB3 LINE L1 1614 2450 -3934 2290 95 0 0 chr11 776336 776631 -150006922 + AluY SINE Alu 1 295 -16 3834 232 25 14 chr11 776631 777820 -150005733 + L1MB3 LINE L1 2651 3853 -2529 1614 120 12 4 chr11 777829 778071 -150005482 - THE1B LTR MaLR 0 364 121 5209 235 53 47 chr11 778080 779278 -150004275 + L1MB3 LINE L1 3858 5072 -1310 2045 117 7 3 chr11 779278 779578 -150003975 - AluSq SINE Alu -12 301 1 5209 235 53 47 chr11 779578 780098 -150003455 + L1MB3 LINE L1 5072 5587 -795 2260 109 0 0 chr11 780098 780530 -150003023 - AluSx SINE Alu 0 432 1 2630 251 72 19 chr11 780530 781298 -150002255 + L1MB3 LINE L1 5572 6379 -40 2311 78 0 0 chr11 781300 781593 -150001960 + AluSc SINE Alu 6 298 -11 736 139 9 0 chr11 781606 781721 -150001832 + FLAM_C SINE Alu 6 121 -22 198 0 0 0 chr11 781721 781743 -150001810 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1227 286 51 0 chr11 784736 785190 -149998363 - L1MB3 LINE L1 -84 6099 5623 336 250 20 10 chr11 785191 785291 -149998262 - L1MB3 LINE L1 -622 5549 5449 241 304 0 0 chr11 785296 785365 -149998188 + L1ME LINE L1 5590 5658 -463 297 277 34 25 chr11 787212 787331 -149996222 - L1ME LINE L1 -622 5824 5705 1224 52 0 7 chr11 787735 787888 -149995665 + AluY SINE Alu 1 152 -159 2320 91 3 0 chr11 788443 788751 -149994802 - AluSg SINE Alu -1 309 1 502 254 60 50 chr11 789363 789761 -149993792 - L1ME LINE L1 -1331 5095 4680 945 269 177 13 chr11 789861 790240 -149993313 + LTR33 LTR ERVL 32 472 -49 4050 217 74 89 chr11 790242 790572 -149992981 - L1MCa LINE L1 -3302 3124 2790 2126 133 0 0 chr11 790572 790881 -149992672 - AluSg SINE Alu -1 309 1 4050 217 74 89 chr11 790881 791118 -149992435 - L1MCa LINE L1 -3636 2790 2551 318 24 24 0 chr11 791118 791160 -149992393 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2203 82 7 0 chr11 791160 791442 -149992111 - AluSp SINE Alu -1 325 1 4050 217 74 89 chr11 791442 791625 -149991928 - L1MCa LINE L1 -3874 2552 2368 2175 127 41 36 chr11 791625 791987 -149991566 + THE1B LTR MaLR 1 364 0 4050 217 74 89 chr11 791987 792919 -149990634 - L1MCa LINE L1 -4058 2368 1423 1277 122 0 0 chr11 792919 793100 -149990453 - AluSq SINE Alu -1 312 132 2400 73 0 10 chr11 793100 793414 -149990139 - AluY SINE Alu 0 311 1 4050 217 74 89 chr11 793414 794127 -149989426 - L1MCa LINE L1 -5001 1425 575 1514 165 0 18 chr11 794132 794411 -149989142 - L1MCa LINE L1 -5811 615 342 1247 174 41 90 chr11 794553 794862 -149988691 - L1MCa LINE L1 -6063 363 71 2306 78 3 3 chr11 794862 795157 -149988396 - AluY SINE Alu -16 295 1 1247 174 41 90 chr11 795157 795192 -149988361 - L1MCa LINE L1 -6355 71 36 1991 205 66 35 chr11 795592 795848 -149987705 - MER90 LTR ERV1 0 614 367 2231 108 0 3 chr11 795848 796162 -149987391 - AluSq SINE Alu 0 313 1 1991 205 66 35 chr11 796162 796451 -149987102 - MER90 LTR ERV1 -247 367 52 12992 171 16 33 chr11 796839 796885 -149986668 + L1 LINE L1 2350 2395 -3751 2150 121 16 0 chr11 796885 797192 -149986361 + AluSx SINE Alu 1 312 0 12992 171 16 33 chr11 797192 797686 -149985867 + L1 LINE L1 2395 2896 -3250 2215 98 10 0 chr11 797686 797992 -149985561 + AluSx SINE Alu 2 310 -2 12992 171 16 33 chr11 797992 798662 -149984891 + L1 LINE L1 2896 3576 -2570 1863 97 45 4 chr11 798662 798956 -149984597 + AluY SINE Alu 1 305 0 12992 171 16 33 chr11 798956 800789 -149982764 + L1 LINE L1 3576 5345 -801 2115 96 0 55 chr11 800789 801101 -149982452 - AluSx SINE Alu -17 295 1 228 287 6 54 chr11 801181 801200 -149982353 - L1MA10 LINE L1 0 6334 6316 674 190 13 91 chr11 801200 801432 -149982121 - L1ME2 LINE L1 -9 6155 5942 556 297 89 12 chr11 801456 801793 -149981760 - L1M4c LINE L1 -4782 1602 1240 978 212 41 17 chr11 801798 802248 -149981305 - MLT1E LTR MaLR -37 556 1 642 224 77 29 chr11 802275 802445 -149981108 - L2 LINE L2 -1034 2280 2103 205 253 19 45 chr11 803403 803557 -149979996 + (GGGTG)n Simple_repeat Simple_repeat 3 152 0 * 275 149 93 43 chr11 803442 803603 -149979950 + (CTGGGG)n Simple_repeat Simple_repeat 3 171 0 300 219 0 0 chr11 812815 812897 -149970656 + (CCCCG)n Simple_repeat Simple_repeat 1 82 0 184 184 0 26 chr11 813667 813743 -149969810 + G-rich Low_complexity Low_complexity 1 74 0 541 253 124 62 chr11 814484 814903 -149968650 - MLT1C LTR MaLR -15 452 8 2240 107 3 0 chr11 816543 816851 -149966702 + AluSq SINE Alu 1 309 -4 182 319 190 0 chr11 817184 817300 -149966253 - L2 LINE L2 0 3313 3176 328 373 0 0 chr11 817530 817640 -149965913 + (TGGG)n Simple_repeat Simple_repeat 1 110 0 253 307 7 15 chr11 822224 822361 -149961192 + (CCA)n Simple_repeat Simple_repeat 3 138 0 231 307 7 15 chr11 823895 824032 -149959521 + (CCA)n Simple_repeat Simple_repeat 3 138 0 471 299 147 0 chr11 824378 824582 -149958971 - L2 LINE L2 -1217 2097 1864 2317 171 69 19 chr11 824584 825106 -149958447 - MER41C LTR ERV1 0 554 7 23 33 0 0 chr11 825720 825750 -149957803 + GC_rich Low_complexity Low_complexity 1 30 0 260 294 35 12 chr11 826690 826775 -149956778 + MIR3 SINE MIR 107 193 -15 2192 152 89 8 chr11 826885 827279 -149956274 - MSTA LTR MaLR -2 426 1 200 293 0 12 chr11 828498 828580 -149954973 + G-rich Low_complexity Low_complexity 3 83 0 352 321 49 40 chr11 829741 829965 -149953588 - L1MC5 LINE L1 -741 7220 6995 288 345 28 0 chr11 830317 830459 -149953094 - L1MCa LINE L1 -3791 2635 2490 307 298 53 53 chr11 830485 830673 -149952880 - L1MCa LINE L1 -3964 2462 2275 2265 102 0 0 chr11 831355 831659 -149951894 - AluSx SINE Alu -8 304 1 379 280 77 10 chr11 833776 833983 -149949570 + MER106B DNA MER1_type 7 227 -832 596 285 131 15 chr11 834022 834572 -149948981 + MER106B DNA MER1_type 352 1059 0 560 301 97 11 chr11 836213 836575 -149946978 - L1MD3 LINE L1 0 7995 7603 340 178 0 97 chr11 838361 838546 -149945007 + (CACCC)n Simple_repeat Simple_repeat 3 169 0 261 191 0 96 chr11 838557 838714 -149944839 + (CACCC)n Simple_repeat Simple_repeat 3 144 0 219 216 20 0 chr11 839401 839452 -149944101 - MIR SINE MIR -60 148 97 207 392 110 18 chr11 841633 842133 -149941420 + L2 LINE L2 2035 2580 -734 419 330 68 56 chr11 842803 843158 -149940395 + HAL1b LINE L1 335 693 -655 227 274 0 12 chr11 843945 844029 -149939524 - L1 LINE L1 -1082 5064 4982 231 200 40 0 chr11 846124 846174 -149937379 + (CCCTAG)n Simple_repeat Simple_repeat 6 57 0 348 253 66 0 chr11 847252 847418 -149936135 + (CAGGG)n Simple_repeat Simple_repeat 4 180 0 427 160 67 0 chr11 847532 848057 -149935496 + (CGG)n Simple_repeat Simple_repeat 1 560 0 2284 82 0 3 chr11 850813 851107 -149932446 + AluY SINE Alu 5 297 -14 520 187 0 37 chr11 852487 852616 -149930937 - L1PA8A LINE L1 0 6131 6025 207 0 0 0 chr11 852651 852674 -149930879 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1039 33 0 0 chr11 852676 852798 -149930755 - L1PA4 LINE L1 -13 6142 6021 958 80 0 22 chr11 852815 852953 -149930600 - L1PA4 LINE L1 0 6155 6021 1000 58 0 22 chr11 852970 853108 -149930445 - L1PA4 LINE L1 0 6155 6021 805 249 47 8 chr11 853113 853370 -149930183 - L1MC4 LINE L1 -994 7048 6782 27 29 0 0 chr11 861900 861934 -149921619 + AT_rich Low_complexity Low_complexity 1 34 0 2479 58 0 3 chr11 861934 862243 -149921310 - AluY SINE Alu -3 308 1 219 69 0 0 chr11 862550 862579 -149920974 + (T)n Simple_repeat Simple_repeat 1 29 0 398 322 141 34 chr11 865927 866150 -149917403 + L1M4 LINE L1 4508 4706 -1440 2060 103 17 13 chr11 866150 866451 -149917102 + AluSx SINE Alu 11 312 0 2184 102 0 3 chr11 866458 866753 -149916800 + AluSg SINE Alu 1 294 -16 398 322 141 34 chr11 866753 867118 -149916435 + L1M4 LINE L1 4711 5168 -978 2229 110 3 0 chr11 867178 867486 -149916067 + AluSx SINE Alu 1 309 -3 620 288 56 28 chr11 867553 867838 -149915715 - HAL1 LINE L1 -799 1708 1416 2488 79 0 0 chr11 868149 868491 -149915062 + THE1A LTR MaLR 14 355 0 11729 100 4 19 chr11 868492 868928 -149914625 + THE1A-int LTR MaLR 3 444 -1136 2095 102 18 0 chr11 868928 869212 -149914341 + AluSx SINE Alu 1 289 -23 11729 100 4 19 chr11 869212 870378 -149913175 + THE1A-int LTR MaLR 444 1580 0 2638 69 29 6 chr11 870378 870725 -149912828 + THE1A LTR MaLR 1 355 0 1695 137 21 27 chr11 870725 871054 -149912499 + THE1C LTR MaLR 49 375 0 2483 71 0 0 chr11 871299 871609 -149911944 - AluY SINE Alu -1 310 1 417 316 99 0 chr11 871648 871819 -149911734 + MIR SINE MIR 4 191 -71 229 128 0 139 chr11 872638 872724 -149910829 + (CGGGA)n Simple_repeat Simple_repeat 2 75 0 217 204 51 51 chr11 878859 878957 -149904596 + G-rich Low_complexity Low_complexity 4 101 0 206 255 20 0 chr11 880222 880273 -149903280 + MIR SINE MIR 90 141 -67 848 237 117 41 chr11 880283 880701 -149902852 + MLT1C LTR MaLR 6 455 -12 231 253 0 0 chr11 881062 881157 -149902396 + (CACCC)n Simple_repeat Simple_repeat 5 99 0 218 318 7 13 chr11 883158 883312 -149900241 + (TGG)n Simple_repeat Simple_repeat 1 153 0 207 328 0 0 chr11 883367 883486 -149900067 + (TGG)n Simple_repeat Simple_repeat 3 121 0 217 314 7 15 chr11 885374 885511 -149898042 + (TGG)n Simple_repeat Simple_repeat 3 138 0 242 307 7 15 chr11 887045 887182 -149896371 + (TGG)n Simple_repeat Simple_repeat 3 138 0 2930 214 22 27 chr11 1089123 1090156 -149693397 + L1P3 LINE L1 981 2000 -4461 5704 85 2 0 chr11 1090256 1091112 -149692441 - L1P LINE L1 -1542 4604 3747 2314 11 0 0 chr11 1091111 1091530 -149692023 + L1P1 LINE L1 5133 5551 -604 * 411 172 188 39 chr11 1092520 1092648 -149690905 - L2 LINE L2 0 3313 3167 349 227 33 60 chr11 1092897 1093047 -149690506 - L1MD3 LINE L1 -8 7987 7842 528 211 17 18 chr11 1093047 1093177 -149690376 - MER20 DNA MER1_type -57 162 48 492 303 92 80 chr11 1093649 1094249 -149689304 + L1MC/D LINE L1 4785 5449 -767 236 363 48 0 chr11 1094252 1094398 -149689155 - MLT1I LTR MaLR -13 396 244 2271 233 105 27 chr11 1094679 1095037 -149688516 - L1 LINE L1 -3739 3826 3497 366 91 0 0 chr11 1095037 1095092 -149688461 + (TG)n Simple_repeat Simple_repeat 2 56 0 2271 233 105 27 chr11 1095092 1095897 -149687656 - L1 LINE L1 -4068 3497 2582 1967 148 167 11 chr11 1098692 1099063 -149684490 - Tigger2a DNA MER2_type -2 432 4 199 378 75 21 chr11 1099646 1099834 -149683719 - L2 LINE L2 -14 3299 3102 245 327 154 29 chr11 1099967 1100175 -149683378 - L2 LINE L2 -509 2805 2572 281 246 100 18 chr11 1102159 1102269 -149681284 + MIR SINE MIR 117 235 -27 316 249 228 40 chr11 1102597 1103023 -149680530 - L2 LINE L2 -735 2579 2074 1610 53 18 0 chr11 1103112 1103339 -149680214 - L1PA5 LINE L1 -253 5901 5671 187 223 97 39 chr11 1103601 1103704 -149679849 - L2 LINE L2 -1688 1626 1518 1684 32 0 0 chr11 1103740 1103960 -149679593 + L1P2 LINE L1 5334 5553 -601 2022 99 28 62 chr11 1104075 1104397 -149679156 - AluSx SINE Alu 0 312 2 2213 64 43 0 chr11 1104471 1104751 -149678802 - AluY SINE Alu -17 294 3 699 207 0 15 chr11 1104755 1104890 -149678663 - FLAM_C SINE Alu 0 133 1 200 322 25 34 chr11 1104909 1105027 -149678526 + MER5A DNA MER1_type 46 162 -27 1814 144 0 23 chr11 1105480 1105779 -149677774 - AluJo SINE Alu -20 292 1 3560 44 9 0 chr11 1107134 1107564 -149675989 + L1PA6 LINE L1 5721 6154 0 1492 205 166 27 chr11 1107916 1108326 -149675227 - MLT1C LTR MaLR 0 467 1 239 302 52 10 chr11 1110989 1111085 -149672468 + L2 LINE L2 3174 3273 -40 260 326 132 21 chr11 1111597 1111741 -149671812 + MIR SINE MIR 1 160 -102 233 235 176 29 chr11 1112041 1112143 -149671410 - MIR3 SINE MIR -7 201 85 261 119 0 0 chr11 1114234 1114276 -149669277 + (T)n Simple_repeat Simple_repeat 1 42 0 39 92 0 0 chr11 1114781 1114890 -149668663 + GC_rich Low_complexity Low_complexity 1 109 0 23 0 0 0 chr11 1114967 1114990 -149668563 + GC_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr11 1115014 1115059 -149668494 + GC_rich Low_complexity Low_complexity 1 45 0 248 164 45 15 chr11 1115233 1115300 -149668253 + (CCGGG)n Simple_repeat Simple_repeat 3 71 0 546 261 0 0 chr11 1115483 1115659 -149667894 + (CTGGGG)n Simple_repeat Simple_repeat 3 178 0 233 170 0 38 chr11 1116154 1116207 -149667346 + GA-rich Low_complexity Low_complexity 2 52 0 25 51 0 0 chr11 1116440 1116479 -149667074 + GC_rich Low_complexity Low_complexity 1 39 0 213 125 62 0 chr11 1116530 1116578 -149666975 + (CCCCG)n Simple_repeat Simple_repeat 3 53 0 226 217 9 47 chr11 1116599 1116705 -149666848 + G-rich Low_complexity Low_complexity 1 102 0 3065 162 34 26 chr11 1116846 1117463 -149666090 - L1MC1 LINE L1 -172 6161 5540 400 341 97 19 chr11 1117728 1118048 -149665505 + MLT1I LTR MaLR 42 386 -23 1762 157 0 41 chr11 1118465 1118783 -149664770 + AluJb SINE Alu 1 305 -7 2188 104 0 0 chr11 1118785 1119082 -149664471 + AluY SINE Alu 1 297 -14 2254 87 3 10 chr11 1119524 1119834 -149663719 + AluY SINE Alu 1 308 -3 576 280 134 8 chr11 1119916 1120231 -149663322 - MLT1G1 LTR MaLR -175 367 12 1849 151 3 10 chr11 1120341 1120632 -149662921 + AluJb SINE Alu 21 309 -3 296 283 42 17 chr11 1120889 1121009 -149662544 + (TATATG)n Simple_repeat Simple_repeat 2 124 0 313 289 66 33 chr11 1121099 1121251 -149662302 - L1MC5 LINE L1 -45 7916 7760 859 175 0 0 chr11 1121252 1121395 -149662158 + FLAM_C SINE Alu 1 143 0 298 302 35 0 chr11 1122352 1122438 -149661115 + MIR3 SINE MIR 109 197 -11 279 176 29 20 chr11 1122801 1122874 -149660679 + MSTC LTR MaLR 7 81 -284 1513 173 47 20 chr11 1122875 1123176 -149660377 + AluJo SINE Alu 1 309 -3 1883 131 4 4 chr11 1123177 1123452 -149660101 + AluSx SINE Alu 1 275 -37 2159 112 3 0 chr11 1123623 1123918 -149659635 - AluSx SINE Alu -16 296 1 210 71 0 0 chr11 1125262 1125290 -149658263 + (CAGCC)n Simple_repeat Simple_repeat 1 28 0 235 278 0 0 chr11 1125388 1125442 -149658111 + MIR SINE MIR 96 149 -113 422 239 84 80 chr11 1125813 1126052 -149657501 - MLT1D LTR MaLR -260 245 6 212 0 36 0 chr11 1126206 1126234 -149657319 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1778 174 3 3 chr11 1126236 1126535 -149657018 - AluSx SINE Alu -5 307 9 297 211 44 22 chr11 1126903 1126993 -149656560 - L1MB3 LINE L1 -2 6181 6090 1216 201 48 0 chr11 1128173 1128446 -149655107 - L1MB3 LINE L1 -75 6108 5823 1355 94 4 3 chr11 1128446 1128691 -149654862 - AluSp SINE Alu -6 307 1 424 184 149 21 chr11 1128692 1128833 -149654720 - L1MB3 LINE L1 -342 5829 5671 1876 155 3 16 chr11 1132140 1132444 -149651109 - AluJo SINE Alu -12 300 1 318 295 74 20 chr11 1133059 1133208 -149650345 + L2 LINE L2 2848 3004 -309 195 350 36 44 chr11 1134866 1135003 -149648550 - MIR3 SINE MIR -71 137 2 235 208 94 62 chr11 1135104 1135200 -149648353 - MIR SINE MIR -133 129 31 308 381 14 36 chr11 1136445 1136584 -149646969 - L1MB3 LINE L1 -2206 5602 5467 29 0 0 0 chr11 1137890 1137919 -149645634 + AT_rich Low_complexity Low_complexity 1 29 0 1354 186 48 11 chr11 1137923 1138277 -149645276 + Charlie5 DNA MER1_type 2235 2601 -11 1200 306 101 38 chr11 1138280 1139772 -149643781 + L1ME LINE L1 113 1737 -4573 614 349 73 46 chr11 1139781 1140324 -149643229 + L1ME LINE L1 1789 3318 -2811 4502 206 49 39 chr11 1140366 1141795 -149641758 + L1ME LINE L1 3706 5148 -981 271 247 7 7 chr11 1141916 1142070 -149641483 + (TG)n Simple_repeat Simple_repeat 2 155 0 2321 51 27 10 chr11 1143915 1144209 -149639344 + AluY SINE Alu 1 299 -12 230 238 32 16 chr11 1144618 1144681 -149638872 - L2 LINE L2 0 3272 3209 182 234 0 94 chr11 1150916 1150980 -149632573 - MIR SINE MIR -117 145 88 201 246 108 15 chr11 1151223 1151288 -149632265 - MIR3 SINE MIR -27 181 111 689 321 11 0 chr11 1153326 1153513 -149630040 + MIR SINE MIR 46 234 -28 1070 72 0 7 chr11 1154382 1154534 -149629019 + AluY SINE Alu 149 299 -12 271 188 39 47 chr11 1155897 1156025 -149627528 + (GGGTG)n Simple_repeat Simple_repeat 3 129 0 2286 76 0 20 chr11 1158847 1159148 -149624405 + AluSc SINE Alu 1 295 -14 1918 183 40 0 chr11 1159823 1160146 -149623407 - MER1B DNA MER1_type 0 337 2 261 75 0 0 chr11 1162739 1162779 -149620774 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 22 0 0 0 chr11 1163077 1163099 -149620454 + GC_rich Low_complexity Low_complexity 1 22 0 236 217 0 0 chr11 1163341 1163387 -149620166 + MIR SINE MIR 107 152 -110 369 216 11 0 chr11 1163890 1163978 -149619575 - MER45A DNA AcHobo -21 157 69 267 217 17 0 chr11 1165862 1165922 -149617631 - MIR SINE MIR -62 146 86 1612 186 32 0 chr11 1166410 1166749 -149616804 + L1ME LINE L1 5251 5600 -549 1521 283 63 67 chr11 1166752 1167993 -149615560 + L1M4 LINE L1 2558 3793 -2353 436 228 31 6 chr11 1168982 1169137 -149614416 + MIR SINE MIR 61 219 -43 188 151 170 19 chr11 1169188 1169241 -149614312 - MIR3 SINE MIR -52 156 96 258 81 0 0 chr11 1178540 1178577 -149604976 + (TC)n Simple_repeat Simple_repeat 2 38 0 218 358 47 34 chr11 1181722 1181870 -149601683 + MIR3 SINE MIR 34 183 -25 221 287 11 23 chr11 1182581 1182668 -149600885 + G-rich Low_complexity Low_complexity 2 87 0 2891 161 24 39 chr11 1183297 1183795 -149599758 + MER39B LTR ERV1 1 490 -163 2510 36 3 7 chr11 1183795 1184104 -149599449 - AluY SINE Alu -3 308 1 2891 161 24 39 chr11 1184104 1184228 -149599325 + MER39B LTR ERV1 490 614 -39 346 329 105 44 chr11 1184955 1185299 -149598254 - L2 LINE L2 -93 3179 2815 245 329 37 0 chr11 1185472 1185554 -149597999 - L2 LINE L2 -5 3308 3224 260 296 348 12 chr11 1185651 1186474 -149597079 - L2 LINE L2 -524 2790 1692 372 241 25 0 chr11 1187929 1188008 -149595545 + MER81 DNA DNA 17 97 -17 234 255 0 0 chr11 1188306 1188353 -149595200 + (TG)n Simple_repeat Simple_repeat 1 47 0 1522 177 65 31 chr11 1188642 1188936 -149594617 - AluJo SINE Alu -8 304 1 1890 136 6 31 chr11 1189789 1190106 -149593447 + AluSx SINE Alu 1 309 -3 518 300 66 31 chr11 1190278 1190505 -149593048 + MIR SINE MIR 21 255 -7 2264 92 10 0 chr11 1190696 1190991 -149592562 + AluSg SINE Alu 1 298 -12 459 95 0 0 chr11 1191256 1191330 -149592223 - MIR SINE MIR -123 139 66 247 215 0 32 chr11 1191852 1191945 -149591608 + GA-rich Low_complexity Low_complexity 3 92 0 181 237 51 0 chr11 1192146 1192205 -149591348 - MIR SINE MIR -61 147 86 219 114 0 0 chr11 1192547 1192582 -149590971 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 380 250 0 0 chr11 1192665 1192749 -149590804 + MIR SINE MIR 68 151 -57 439 278 44 56 chr11 1194230 1194410 -149589143 + MIR SINE MIR 85 262 0 233 304 48 32 chr11 1195091 1195216 -149588337 + MIR SINE MIR 59 185 -77 1778 166 3 7 chr11 1195399 1195700 -149587853 - AluJb SINE Alu 0 312 13 245 298 75 6 chr11 1195956 1196117 -149587436 - MLT1J2 LTR MaLR -245 205 34 191 295 39 26 chr11 1196278 1196356 -149587197 - L3 LINE CR1 -220 1357 1279 306 73 0 0 chr11 1197628 1197669 -149585884 + (TG)n Simple_repeat Simple_repeat 1 41 0 236 212 26 62 chr11 1198205 1198318 -149585235 + (CCGGG)n Simple_repeat Simple_repeat 2 110 0 260 185 0 0 chr11 1198646 1198700 -149584853 - L2 LINE L2 -265 3048 2995 225 363 26 0 chr11 1198838 1198951 -149584602 - L2 LINE L2 -670 2644 2529 191 355 26 0 chr11 1199061 1199137 -149584416 - L2 LINE L2 -953 2361 2284 211 243 27 40 chr11 1202292 1202366 -149581187 - MIR SINE MIR -116 92 20 208 244 0 0 chr11 1203482 1203527 -149580026 + (TG)n Simple_repeat Simple_repeat 1 45 0 1547 149 58 0 chr11 1206939 1207200 -149576353 - AluJb SINE Alu -20 292 17 350 256 87 23 chr11 1207280 1207452 -149576101 - MLT1K LTR MaLR -243 345 163 289 324 133 6 chr11 1207836 1208009 -149575544 + MIR SINE MIR 27 221 -41 1099 81 0 69 chr11 1209160 1209333 -149574220 + AluY SINE Alu 1 161 -150 256 198 10 10 chr11 1209348 1209444 -149574109 + (CA)n Simple_repeat Simple_repeat 2 97 0 239 333 21 0 chr11 1210842 1210938 -149572615 + MIR SINE MIR 84 181 -81 1771 145 35 10 chr11 1211076 1211365 -149572188 - AluJo SINE Alu -16 296 1 235 302 93 0 chr11 1212564 1212693 -149570860 + LTR48 LTR ERV1 579 719 -68 191 356 11 11 chr11 1214706 1214793 -149568760 + L2 LINE L2 2965 3051 -221 182 236 91 0 chr11 1216876 1216931 -149566622 - L2 LINE L2 -1375 1939 1880 259 121 45 15 chr11 1217221 1217287 -149566266 + (CCCGG)n Simple_repeat Simple_repeat 3 70 0 30 27 0 0 chr11 1217326 1217363 -149566190 + GC_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr11 1217678 1217722 -149565831 + GC_rich Low_complexity Low_complexity 1 44 0 43 20 0 0 chr11 1217812 1217862 -149565691 + GC_rich Low_complexity Low_complexity 1 50 0 376 354 112 29 chr11 1218360 1218451 -149565102 + HAL1 LINE L1 1004 1086 -1421 1498 177 75 17 chr11 1218451 1218745 -149564808 + AluJb SINE Alu 2 312 0 376 354 112 29 chr11 1218745 1218930 -149564623 + HAL1 LINE L1 1086 1303 -1204 398 318 41 72 chr11 1220097 1220181 -149563372 + L1ME4a LINE L1 1040 1125 -4996 764 186 0 0 chr11 1220181 1220305 -149563248 + FLAM_A SINE Alu 1 124 -9 398 318 41 72 chr11 1220305 1220321 -149563232 + L1ME4a LINE L1 1125 1140 -4981 1758 140 0 29 chr11 1220321 1220599 -149562954 + AluJo SINE Alu 19 288 -24 398 318 41 72 chr11 1220599 1220821 -149562732 + L1ME4a LINE L1 1140 6119 -2 196 354 13 0 chr11 1221257 1221336 -149562217 - MIR SINE MIR -84 124 45 202 259 37 0 chr11 1221445 1221499 -149562054 + GA-rich Low_complexity Low_complexity 1 56 0 1976 176 43 5 chr11 1221949 1222325 -149561228 + MLT1B LTR MaLR 1 390 0 214 200 0 18 chr11 1222983 1223038 -149560515 + A-rich Low_complexity Low_complexity 2 55 0 258 105 0 0 chr11 1223598 1223636 -149559917 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 218 265 15 0 chr11 1224565 1224633 -149558920 + (CGGA)n Simple_repeat Simple_repeat 2 70 0 2141 102 0 57 chr11 1227219 1227551 -149556002 - AluSq SINE Alu 0 313 1 251 170 21 0 chr11 1227742 1227789 -149555764 - MLT1A1 LTR MaLR 0 457 410 2123 109 3 0 chr11 1227790 1228116 -149555437 - AluSp SINE Alu 0 327 1 582 91 0 0 chr11 1228118 1228195 -149555358 - AluSp SINE Alu -181 132 56 674 150 33 0 chr11 1228196 1228316 -149555237 - MLT1A1 LTR MaLR -38 327 204 247 279 0 15 chr11 1230432 1230500 -149553053 + G-rich Low_complexity Low_complexity 2 68 0 411 325 90 8 chr11 1230557 1230791 -149552762 - L2 LINE L2 -254 3059 2807 262 0 53 0 chr11 1230927 1230965 -149552588 + (TG)n Simple_repeat Simple_repeat 2 41 0 276 152 63 13 chr11 1230989 1231147 -149552406 + (TG)n Simple_repeat Simple_repeat 2 167 0 224 295 71 36 chr11 1231492 1231604 -149551949 - MIR SINE MIR -62 146 31 321 290 73 17 chr11 1232150 1232297 -149551256 + MIR SINE MIR 5 148 -62 1046 261 46 4 chr11 1232923 1233256 -149550297 - MLT1A2 LTR MaLR -23 444 1 320 267 103 0 chr11 1235844 1235960 -149547593 - MIR SINE MIR -120 142 15 226 333 0 0 chr11 1236360 1236417 -149547136 - MIR SINE MIR -93 169 113 821 251 5 5 chr11 1237051 1237250 -149546303 + MER58A DNA MER1_type 26 224 0 407 324 91 16 chr11 1237334 1237587 -149545966 + L1ME LINE L1 5539 5810 -311 201 132 0 0 chr11 1237852 1237890 -149545663 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 214 319 0 30 chr11 1239214 1239349 -149544204 + C-rich Low_complexity Low_complexity 2 132 0 208 410 35 0 chr11 1239480 1239624 -149543929 + MIR SINE MIR 91 239 -23 207 69 0 0 chr11 1240137 1240166 -149543387 + (ATTG)n Simple_repeat Simple_repeat 3 31 0 530 229 6 0 chr11 1240419 1240598 -149542955 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 228 67 0 0 chr11 1240599 1240629 -149542924 + (TGGG)n Simple_repeat Simple_repeat 2 31 0 482 144 19 0 chr11 1240759 1240863 -149542690 - HAL1b LINE L1 -278 1070 965 417 352 20 52 chr11 1240978 1241228 -149542325 - HAL1b LINE L1 -534 814 573 1128 341 85 1 chr11 1241423 1242167 -149541386 - HAL1 LINE L1 -725 1782 977 322 188 35 0 chr11 1243819 1243904 -149539649 + CT-rich Low_complexity Low_complexity 4 91 0 325 299 75 21 chr11 1244140 1244381 -149539172 + L2 LINE L2 2634 2887 -427 190 372 35 26 chr11 1244585 1244698 -149538855 + L2 LINE L2 3180 3293 -20 254 235 10 0 chr11 1245435 1245537 -149538016 + (TGGA)n Simple_repeat Simple_repeat 2 104 0 698 208 12 0 chr11 1245553 1245986 -149537567 + (TGGA)n Simple_repeat Simple_repeat 1 438 0 410 233 17 6 chr11 1245997 1246173 -149537380 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 378 151 0 0 chr11 1246162 1246235 -149537318 + GA-rich Low_complexity Low_complexity 1 73 0 * 192 333 200 0 chr11 1246600 1246705 -149536848 - MIR SINE MIR -2 260 135 271 253 12 0 chr11 1248229 1248312 -149535241 + L2 LINE L2 2892 2975 -339 351 167 51 0 chr11 1249459 1249537 -149534016 - MER103 DNA DNA -67 99 18 234 62 0 0 chr11 1250652 1250684 -149532869 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 233 316 63 0 chr11 1250689 1250784 -149532769 - L2 LINE L2 -36 3236 3136 366 333 165 12 chr11 1251035 1251290 -149532263 - L1 LINE L1 -2310 3836 3543 308 311 144 16 chr11 1251346 1251976 -149531577 - L1 LINE L1 -2665 3481 2771 264 30 0 0 chr11 1252117 1252150 -149531403 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1514 194 110 22 chr11 1253434 1253878 -149529675 + MLT1D LTR MaLR 23 505 0 205 309 119 99 chr11 1253885 1254287 -149529266 - L2 LINE L2 -46 3226 2817 352 288 59 13 chr11 1254402 1254638 -149528915 + HAL1 LINE L1 1017 1263 -1244 712 245 142 78 chr11 1254649 1255200 -149528353 + HAL1 LINE L1 1337 1922 -585 281 233 0 22 chr11 1255626 1255716 -149527837 + (CA)n Simple_repeat Simple_repeat 1 88 0 222 334 178 28 chr11 1255747 1256286 -149527267 - L2 LINE L2 -623 2691 2072 267 289 198 0 chr11 1257124 1257245 -149526308 - L2 LINE L2 -9 3263 3119 184 268 0 0 chr11 1258309 1258350 -149525203 - L2 LINE L2 -31 3241 3201 571 340 41 16 chr11 1258872 1259187 -149524366 - MLT1J LTR MaLR -148 363 41 222 384 138 15 chr11 1259249 1259780 -149523773 - L2 LINE L2 -769 2545 1950 406 275 42 75 chr11 1259853 1260093 -149523460 + HAL1 LINE L1 6 237 -2270 406 315 36 27 chr11 1260142 1260364 -149523189 + HAL1 LINE L1 391 614 -1893 2326 240 77 46 chr11 1260371 1261365 -149522188 + HAL1 LINE L1 1392 2415 -92 506 69 0 83 chr11 1261490 1261635 -149521918 + (GGA)n Simple_repeat Simple_repeat 1 133 0 213 261 0 0 chr11 1262403 1262449 -149521104 + MIR3 SINE MIR 109 154 -54 203 447 11 0 chr11 1262540 1262719 -149520834 + MIR SINE MIR 36 216 -46 194 336 58 73 chr11 1262974 1263111 -149520442 + L2 LINE L2 3022 3156 -116 203 210 8 40 chr11 1263156 1263280 -149520273 + C-rich Low_complexity Low_complexity 1 120 0 251 210 7 91 chr11 1265669 1265812 -149517741 + (ACGTG)n Simple_repeat Simple_repeat 5 135 0 321 26 0 0 chr11 1266950 1266988 -149516565 + (CA)n Simple_repeat Simple_repeat 1 38 0 266 299 159 75 chr11 1267070 1267535 -149516018 - L2 LINE L2 -6 3307 2804 217 259 103 52 chr11 1267700 1267874 -149515679 - L2 LINE L2 -2678 636 454 205 299 73 15 chr11 1269214 1269351 -149514202 - L2 LINE L2 -213 3059 2915 350 232 6 39 chr11 1320357 1320695 -149462858 + G-rich Low_complexity Low_complexity 1 326 0 206 337 6 33 chr11 1320704 1320885 -149462668 + (GGGTG)n Simple_repeat Simple_repeat 4 179 0 * 370 333 0 32 chr11 1320759 1320945 -149462608 + G-rich Low_complexity Low_complexity 1 180 0 2005 123 10 3 chr11 1321373 1321665 -149461888 - AluSq SINE Alu -19 294 1 265 232 66 60 chr11 1321713 1321864 -149461689 - L1MC5 LINE L1 -933 7028 6877 387 0 0 0 chr11 1322053 1322096 -149461457 + (CA)n Simple_repeat Simple_repeat 2 44 0 307 266 188 0 chr11 1322795 1322923 -149460630 + L1ME4a LINE L1 5967 6118 -3 486 343 26 22 chr11 1323115 1323383 -149460170 - L1MC4 LINE L1 -16 8026 7758 2635 102 5 30 chr11 1323496 1323869 -149459684 + THE1B LTR MaLR 1 364 0 4225 122 29 3 chr11 1323869 1324638 -149458915 + THE1B-int LTR MaLR 1 789 -791 2630 290 22 16 chr11 1325631 1326103 -149457450 + L1MC4a LINE L1 6477 6944 -864 2142 122 6 3 chr11 1326103 1326414 -149457139 + AluSx SINE Alu 1 312 0 2630 290 22 16 chr11 1326414 1327010 -149456543 + L1MC4a LINE L1 6944 7520 -288 280 264 27 0 chr11 1328060 1328149 -149455404 + MIR3 SINE MIR 63 157 -51 243 246 35 0 chr11 1328786 1328843 -149454710 + MIR SINE MIR 64 122 -86 689 148 9 0 chr11 1329089 1329197 -149454356 + FRAM SINE Alu 62 170 -6 34 65 0 0 chr11 1329969 1330031 -149453522 + AT_rich Low_complexity Low_complexity 1 62 0 186 43 0 0 chr11 1330729 1330752 -149452801 + (CCCCAG)n Simple_repeat Simple_repeat 6 28 0 401 353 107 43 chr11 1331744 1332212 -149451341 - HAL1 LINE L1 -1206 1301 880 245 346 0 32 chr11 1332407 1332592 -149450961 + GA-rich Low_complexity Low_complexity 1 179 0 379 335 12 12 chr11 1333820 1333990 -149449563 + (TCCA)n Simple_repeat Simple_repeat 2 171 0 225 65 0 0 chr11 1335204 1335235 -149448318 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 856 298 79 74 chr11 1336795 1337023 -149446530 - L1MC5 LINE L1 -397 7564 7339 231 61 0 0 chr11 1337023 1337056 -149446497 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 856 298 79 74 chr11 1337056 1337818 -149445735 - L1MC5 LINE L1 -622 7339 6555 1412 241 33 9 chr11 1337895 1338322 -149445231 - L1PA16 LINE L1 -5 6161 5725 1715 189 5 28 chr11 1338606 1338961 -149444592 + L1P LINE L1 4978 5323 -823 2081 118 7 0 chr11 1338961 1339249 -149444304 + AluSc SINE Alu 1 290 -19 1715 189 5 28 chr11 1339249 1339328 -149444225 + L1P LINE L1 5323 5402 -744 1250 132 21 13 chr11 1339328 1339563 -149443990 + THE1A LTR MaLR 1 237 -118 676 66 0 0 chr11 1339563 1339654 -149443899 + AluSp/q SINE Alu 215 305 -8 953 70 0 0 chr11 1339654 1339782 -149443771 + THE1A LTR MaLR 228 355 0 4757 94 35 0 chr11 1339783 1340506 -149443047 + THE1A-int LTR MaLR 3 750 -830 1342 126 13 4 chr11 1340506 1340736 -149442817 - THE1A LTR MaLR -123 232 1 3303 79 2 4 chr11 1340736 1341205 -149442348 - THE1A-int LTR MaLR 0 1580 1113 415 113 16 0 chr11 1341208 1341270 -149442283 - AluJb SINE Alu -83 229 167 2062 116 0 38 chr11 1342482 1342802 -149440751 + AluSx SINE Alu 1 308 -4 1213 215 95 31 chr11 1342860 1343170 -149440383 - MLT1C LTR MaLR -52 415 74 2037 147 0 3 chr11 1343170 1343483 -149440070 + AluJb SINE Alu 1 312 0 1213 215 95 31 chr11 1343483 1343562 -149439991 - MLT1C LTR MaLR -393 74 1 1342 174 89 0 chr11 1344096 1344367 -149439186 - MLT1C LTR MaLR -2 430 170 26 0 0 27 chr11 1344370 1344383 -149439170 + AT_rich Low_complexity Low_complexity 1 13 -23 2172 84 7 0 chr11 1344383 1344670 -149438883 + AluSp SINE Alu 1 289 -24 26 0 0 27 chr11 1344670 1344693 -149438860 + AT_rich Low_complexity Low_complexity 13 36 0 204 40 0 0 chr11 1344696 1344721 -149438832 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 835 175 7 13 chr11 1344723 1344877 -149438676 - FRAM SINE Alu -30 146 1 811 118 77 29 chr11 1344877 1345047 -149438506 - MLT1C LTR MaLR -289 178 1 850 158 0 0 chr11 1345251 1345384 -149438169 - AluSq/x SINE Alu -180 133 1 2367 90 0 0 chr11 1345868 1346178 -149437375 - AluSx SINE Alu -2 310 1 979 188 0 0 chr11 1346229 1346399 -149437154 - FRAM SINE Alu -10 166 1 290 288 39 10 chr11 1348480 1348657 -149434896 + MIR SINE MIR 6 241 -21 2012 55 76 7 chr11 1349017 1349292 -149434261 + AluY SINE Alu 1 294 -17 708 290 43 24 chr11 1349628 1349883 -149433670 - MIR SINE MIR -1 261 2 341 277 36 0 chr11 1350714 1350826 -149432727 - MER5A DNA MER1_type -38 151 36 2253 72 3 0 chr11 1350926 1351254 -149432299 + AluSx SINE Alu 1 312 0 33 25 0 0 chr11 1351933 1351973 -149431580 + AT_rich Low_complexity Low_complexity 1 40 0 210 321 94 19 chr11 1352088 1352194 -149431359 - MIR SINE MIR -25 237 124 252 276 115 0 chr11 1352346 1352433 -149431120 - L1ME4a LINE L1 -3 6118 6022 457 267 15 0 chr11 1355042 1355177 -149428376 - MER67B LTR ERV1 0 661 525 978 176 0 0 chr11 1355177 1355373 -149428180 + FRAM SINE Alu 1 176 0 516 280 131 27 chr11 1355373 1355790 -149427763 - MER67B LTR ERV1 -128 533 34 1060 174 0 0 chr11 1355938 1356099 -149427454 + U1 snRNA snRNA 1 161 -4 617 209 199 31 chr11 1356136 1356332 -149427221 - L1MB5 LINE L1 -18 6156 5928 2496 57 0 0 chr11 1357163 1357464 -149426089 - AluY SINE Alu -10 301 1 2177 75 0 0 chr11 1358896 1359177 -149424376 + AluY SINE Alu 1 281 -30 1896 123 50 0 chr11 1359765 1360042 -149423511 + AluSg SINE Alu 1 291 -19 696 150 0 9 chr11 1361923 1362036 -149421517 + AluY SINE Alu 184 295 -16 379 263 177 7 chr11 1362970 1363175 -149420378 + MIR SINE MIR 23 262 0 2247 161 68 12 chr11 1364078 1364487 -149419066 - Tigger2a DNA MER2_type -1 433 2 413 245 93 16 chr11 1365966 1366134 -149417419 - MIR SINE MIR -37 171 8 382 102 0 0 chr11 1367449 1367508 -149416045 - L1MB2 LINE L1 0 6171 6113 2405 257 45 14 chr11 1367532 1368145 -149415408 - L1MB5 LINE L1 -282 5901 5308 932 278 141 43 chr11 1368145 1368655 -149414898 - MER68 LTR ERV1 -2 560 1 2405 257 45 14 chr11 1368655 1368680 -149414873 - L1MB5 LINE L1 -875 5308 5538 1781 176 0 7 chr11 1368680 1368981 -149414572 + AluJo SINE Alu 1 299 -13 2405 257 45 14 chr11 1368981 1369177 -149414376 - L1MB5 LINE L1 -644 5539 5351 2008 129 88 16 chr11 1369268 1369632 -149413921 + MSTC LTR MaLR 1 390 -38 2044 114 0 20 chr11 1369632 1369931 -149413622 + AluSc SINE Alu 1 293 -16 2269 93 7 0 chr11 1369945 1370255 -149413298 + AluSx SINE Alu 1 312 0 201 200 20 0 chr11 1370259 1370309 -149413244 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 801 193 0 0 chr11 1370381 1370516 -149413037 + AluJo SINE Alu 1 135 -177 26 0 0 0 chr11 1370516 1370542 -149413011 + AT_rich Low_complexity Low_complexity 1 26 0 841 305 98 82 chr11 1370671 1371399 -149412154 - L1MEd LINE L1 -2919 3210 2472 1802 181 75 14 chr11 1371405 1371820 -149411733 - L1MC1 LINE L1 -5 6328 5889 945 221 4 65 chr11 1371862 1372093 -149411460 - MER21B LTR ERV1 -72 791 575 1987 112 0 0 chr11 1372094 1372371 -149411182 + AluSc SINE Alu 1 277 -32 546 91 0 0 chr11 1372371 1372448 -149411105 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 2652 169 27 4 chr11 1372453 1372932 -149410621 - L1MCa LINE L1 -5930 496 7 410 323 65 46 chr11 1373098 1373885 -149409668 - L1MEd LINE L1 -4845 1465 642 8751 41 2 1 chr11 1375981 1376987 -149406566 - LTR13 LTR ERVK 0 1007 1 2540 174 36 11 chr11 1377947 1378423 -149405130 - L1MA4 LINE L1 -3 6297 5810 2192 113 0 0 chr11 1378910 1379211 -149404342 + AluSx SINE Alu 6 306 -6 1971 147 0 0 chr11 1379685 1379984 -149403569 + AluJo SINE Alu 1 299 -13 277 295 124 30 chr11 1380012 1380243 -149403310 + L1M4 LINE L1 2820 3028 -3118 2360 80 0 0 chr11 1380243 1380543 -149403010 + AluSg SINE Alu 2 301 -9 277 295 124 30 chr11 1380543 1380748 -149402805 + L1M4 LINE L1 3028 3297 -2849 1556 176 11 0 chr11 1380751 1381012 -149402541 + AluJb SINE Alu 13 276 -36 243 103 0 0 chr11 1381012 1381051 -149402502 + (TATG)n Simple_repeat Simple_repeat 4 42 0 1583 238 65 19 chr11 1381865 1382394 -149401159 - LTR26E LTR ERV1 0 622 1 239 238 119 16 chr11 1382728 1382854 -149400699 + L1ME4a LINE L1 5974 6112 -9 247 344 41 16 chr11 1384385 1384507 -149399046 + MIR3 SINE MIR 77 201 -7 2081 87 3 48 chr11 1384709 1385019 -149398534 - AluSg SINE Alu -14 296 1 215 299 39 13 chr11 1385462 1385539 -149398014 + MIR SINE MIR 18 96 -166 2303 82 3 3 chr11 1386766 1387072 -149396481 - AluSp SINE Alu -7 306 1 1429 197 24 7 chr11 1387521 1387816 -149395737 + AluJb SINE Alu 1 300 -12 2331 84 0 10 chr11 1387911 1388221 -149395332 + AluY SINE Alu 2 308 -3 270 176 0 0 chr11 1390463 1390514 -149393039 - AluSg SINE Alu -1 307 257 1762 101 4 19 chr11 1390607 1390864 -149392689 - AluSg SINE Alu -57 253 1 2222 77 11 0 chr11 1390987 1391272 -149392281 + AluSp SINE Alu 7 294 -19 2048 99 0 0 chr11 1391281 1391554 -149391999 + AluSc SINE Alu 37 309 0 366 294 52 0 chr11 1392298 1392451 -149391102 - MER20 DNA MER1_type -2 217 57 2232 45 0 28 chr11 1392800 1393108 -149390445 - AluY SINE Alu 0 300 1 180 382 67 0 chr11 1393291 1393380 -149390173 - MIR SINE MIR -10 252 158 1509 214 38 3 chr11 1394857 1395226 -149388327 - L1MB3 LINE L1 -43 6140 5759 2276 111 0 0 chr11 1395796 1396093 -149387460 - AluSc SINE Alu -12 297 1 2174 103 43 10 chr11 1397953 1398255 -149385298 - AluSx SINE Alu 0 312 1 877 180 0 0 chr11 1398265 1398426 -149385127 - L1MA4 LINE L1 -6 6294 6134 1888 119 83 4 chr11 1398522 1398799 -149384754 + AluSx SINE Alu 2 300 -12 216 0 0 0 chr11 1398910 1398934 -149384619 + (CAGGG)n Simple_repeat Simple_repeat 3 26 0 2401 92 0 7 chr11 1399301 1399604 -149383949 - AluSg SINE Alu -9 301 1 289 289 67 19 chr11 1400949 1401053 -149382500 + L2 LINE L2 2281 2389 -925 366 299 98 40 chr11 1401071 1401245 -149382308 + L2 LINE L2 2292 2475 -839 255 296 49 43 chr11 1404268 1404430 -149379123 + L1MD2 LINE L1 5683 5845 -1963 25 0 0 0 chr11 1404453 1404478 -149379075 + AT_rich Low_complexity Low_complexity 1 25 0 446 193 44 9 chr11 1404520 1404637 -149378916 - MLT1G1 LTR MaLR 0 595 429 425 296 29 39 chr11 1404738 1404944 -149378609 - MLT1G1 LTR MaLR -331 259 56 2162 94 0 0 chr11 1405219 1405485 -149378068 - AluSx SINE Alu -46 266 1 336 301 147 19 chr11 1405506 1405825 -149377728 + L1MC4a LINE L1 6504 6863 -945 599 270 60 27 chr11 1405835 1406201 -149377352 + L1MD2 LINE L1 5835 6267 -92 301 195 5 0 chr11 1406231 1406291 -149377262 + L1MC4 LINE L1 6856 7010 -1032 1256 173 13 9 chr11 1406292 1406518 -149377035 + AluJo SINE Alu 85 311 -1 312 266 71 48 chr11 1406629 1406841 -149376712 + L1MC4 LINE L1 7032 7207 -754 239 236 28 28 chr11 1407070 1407142 -149376411 - MER5A DNA MER1_type -89 100 29 412 322 78 43 chr11 1407158 1407429 -149376124 + L1MC5 LINE L1 7322 7609 -352 2384 71 30 7 chr11 1407429 1407726 -149375827 + AluSp SINE Alu 1 304 -9 412 322 78 43 chr11 1407726 1407799 -149375754 + L1MC5 LINE L1 7609 7678 -283 21 0 0 0 chr11 1408625 1408646 -149374907 + AT_rich Low_complexity Low_complexity 1 21 0 206 284 90 0 chr11 1409156 1409223 -149374330 - L2 LINE L2 -30 3242 3170 206 256 0 0 chr11 1409442 1409485 -149374068 + MER5B DNA MER1_type 1 43 -135 1530 161 12 24 chr11 1409486 1409740 -149373813 - AluJo SINE Alu -19 293 43 229 175 0 0 chr11 1409741 1409781 -149373772 - MLT1C LTR MaLR -354 113 74 2564 39 3 10 chr11 1410258 1410564 -149372989 - AluY SINE Alu -7 304 1 1237 177 85 35 chr11 1410564 1410847 -149372706 - AluJb SINE Alu -4 298 2 609 139 0 0 chr11 1410852 1410938 -149372615 - FLAM_A SINE Alu -17 125 40 40 49 0 0 chr11 1412209 1412270 -149371283 + GC_rich Low_complexity Low_complexity 1 61 0 216 200 0 91 chr11 1412285 1412395 -149371158 + G-rich Low_complexity Low_complexity 3 102 0 513 256 34 59 chr11 1413576 1413775 -149369778 - MIR SINE MIR -28 234 37 375 272 258 14 chr11 1415893 1416110 -149367443 - L2 LINE L2 -18 3295 3026 305 309 32 16 chr11 1416504 1416627 -149366926 - L2 LINE L2 -9 3304 3180 2415 79 3 7 chr11 1416642 1416945 -149366608 - AluSx SINE Alu -10 302 1 603 177 0 71 chr11 1416972 1417113 -149366440 + FLAM_C SINE Alu 1 131 -2 2196 87 30 33 chr11 1417498 1417798 -149365755 + AluSq SINE Alu 3 301 -12 2271 129 0 0 chr11 1418016 1418327 -149365226 - AluSx SINE Alu -1 311 1 827 161 111 5 chr11 1418717 1418924 -149364629 - L1MA8 LINE L1 -2 6289 6057 2015 132 87 3 chr11 1419178 1419511 -149364042 + MER46B DNA MER2_type 1 236 0 192 301 75 32 chr11 1419620 1419713 -149363840 - MIR SINE MIR -61 201 105 2398 86 7 0 chr11 1419823 1420125 -149363428 - AluSp SINE Alu -9 304 1 908 178 0 46 chr11 1420226 1420400 -149363153 - FRAM SINE Alu -10 166 1 1470 134 20 35 chr11 1420404 1420658 -149362895 - AluSx SINE Alu -6 306 57 814 198 0 32 chr11 1420896 1421053 -149362500 + FRAM SINE Alu 1 152 -24 238 209 209 0 chr11 1421174 1421241 -149362312 - L2 LINE L2 -1 3312 3232 2240 106 3 0 chr11 1421369 1421671 -149361882 - AluSg SINE Alu -7 303 1 317 261 81 27 chr11 1421779 1421890 -149361663 + MIR SINE MIR 74 190 -72 236 189 151 0 chr11 1422157 1422210 -149361343 + L1ME LINE L1 5576 5636 -485 2326 85 7 0 chr11 1422570 1422865 -149360688 - AluSp SINE Alu -16 297 1 960 115 0 55 chr11 1422971 1423136 -149360417 - FRAM SINE Alu 0 176 21 1816 152 7 29 chr11 1423160 1423470 -149360083 - AluSx SINE Alu -6 306 4 1838 148 25 3 chr11 1423934 1424218 -149359335 + AluJo SINE Alu 1 290 -22 192 40 0 0 chr11 1424621 1424646 -149358907 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2204 96 4 0 chr11 1424648 1424929 -149358624 - AluSq SINE Alu -31 282 1 720 218 84 6 chr11 1424936 1425115 -149358438 - L1ME2 LINE L1 0 6164 5972 323 250 68 104 chr11 1426299 1426402 -149357151 - L1MC5 LINE L1 -44 7917 7823 710 214 8 0 chr11 1426402 1426533 -149357020 - FLAM_A SINE Alu -1 132 1 323 250 68 104 chr11 1426533 1426621 -149356932 - L1MC5 LINE L1 -138 7823 7733 503 304 154 27 chr11 1426730 1427244 -149356309 - L1MC4 LINE L1 -251 7791 7213 23 0 0 0 chr11 1428121 1428144 -149355409 + AT_rich Low_complexity Low_complexity 1 23 0 572 237 18 0 chr11 1428855 1428969 -149354584 - FLAM_A SINE Alu -17 116 1 919 199 23 0 chr11 1429094 1429265 -149354288 - AluJo SINE Alu -18 294 120 1890 105 81 48 chr11 1429396 1429554 -149353999 - AluSx SINE Alu -7 305 154 568 130 0 0 chr11 1429554 1429646 -149353907 - L1PA8 LINE L1 -5 6167 6076 212 0 36 0 chr11 1429652 1429680 -149353873 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1890 105 81 48 chr11 1429680 1429809 -149353744 - AluSx SINE Alu -162 150 1 902 35 18 0 chr11 1430177 1430290 -149353263 + L1PA4 LINE L1 6041 6155 0 1801 174 3 0 chr11 1430355 1430642 -149352911 + AluJb SINE Alu 1 288 -24 1846 156 17 13 chr11 1431432 1431733 -149351820 - AluJo SINE Alu -10 302 1 246 233 194 61 chr11 1431736 1432081 -149351472 - L1ME2 LINE L1 -469 5652 5256 21 0 0 0 chr11 1432096 1432117 -149351436 + AT_rich Low_complexity Low_complexity 1 21 0 1513 210 93 0 chr11 1432347 1432681 -149350872 - MER47A DNA MER2_type 0 366 2 1791 150 61 10 chr11 1435147 1435440 -149348113 + AluJb SINE Alu 1 308 -4 189 206 0 0 chr11 1436091 1436125 -149347428 + MER5B DNA MER1_type 20 53 -125 2513 57 6 22 chr11 1436779 1437095 -149346458 - AluY SINE Alu 0 311 1 638 247 97 0 chr11 1437149 1437303 -149346250 - FAM SINE Alu -6 169 1 1314 171 122 49 chr11 1437874 1438259 -149345294 + L1MA5 LINE L1 5883 6295 -5 2224 58 68 4 chr11 1438608 1438886 -149344667 + AluY SINE Alu 1 296 -15 1422 184 141 3 chr11 1438915 1439220 -149344333 + MER7A DNA MER2_type 1 345 -1 308 319 28 14 chr11 1441263 1441309 -149342244 - L1MCa LINE L1 -4049 2377 2333 2599 78 0 0 chr11 1441309 1441618 -149341935 - AluSc SINE Alu 0 309 1 308 319 28 14 chr11 1441618 1441715 -149341838 - L1MCa LINE L1 -4093 2333 2232 313 308 8 53 chr11 1442183 1442316 -149341237 - L1ME LINE L1 -399 5722 5596 238 158 0 53 chr11 1442329 1442386 -149341167 - AluSp SINE Alu -132 171 118 927 128 0 0 chr11 1442606 1442739 -149340814 + FLAM_C SINE Alu 1 133 0 451 300 137 13 chr11 1443346 1443573 -149339980 - MIR SINE MIR -3 259 5 276 302 39 34 chr11 1443594 1443773 -149339780 - L1ME LINE L1 -386 5735 5556 25 0 0 0 chr11 1446683 1446708 -149336845 + AT_rich Low_complexity Low_complexity 1 25 0 296 254 16 49 chr11 1447366 1447488 -149336065 + L1MB8 LINE L1 6055 6172 -6 1307 178 91 56 chr11 1448787 1448934 -149334619 + AluJo SINE Alu 1 141 -161 1870 137 10 33 chr11 1448934 1449241 -149334312 + AluSx SINE Alu 1 300 -12 1307 178 91 56 chr11 1449241 1449379 -149334174 + AluJo SINE Alu 141 296 -6 729 205 119 11 chr11 1450916 1451101 -149332452 + MER3 DNA MER1_type 1 205 -4 345 296 271 0 chr11 1451276 1451475 -149332078 + MIR SINE MIR 2 254 -8 343 318 77 51 chr11 1452814 1453009 -149330544 + L1ME LINE L1 5582 5781 -340 292 197 314 0 chr11 1457186 1457323 -149326230 - MER46A DNA MER2_type -56 180 1 335 250 23 0 chr11 1462031 1462119 -149321434 + L1ME2 LINE L1 6066 6155 -9 2173 108 3 0 chr11 1462130 1462425 -149321128 - AluSx SINE Alu -16 296 1 210 71 0 0 chr11 1463769 1463797 -149319756 + (CAGCC)n Simple_repeat Simple_repeat 1 28 0 235 278 0 0 chr11 1463895 1463949 -149319604 + MIR SINE MIR 96 149 -113 429 232 84 80 chr11 1464320 1464557 -149318996 - MLT1D LTR MaLR -260 245 8 212 0 36 0 chr11 1464713 1464741 -149318812 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1792 171 3 3 chr11 1464743 1465042 -149318511 - AluSx SINE Alu -5 307 9 297 211 44 22 chr11 1465411 1465501 -149318052 - L1MB3 LINE L1 -2 6181 6090 1229 202 47 0 chr11 1467070 1467347 -149316206 - L1MB3 LINE L1 -75 6108 5819 2174 92 0 78 chr11 1467347 1467682 -149315871 - AluSq SINE Alu -3 310 2 2221 64 43 0 chr11 1467756 1468037 -149315516 - AluY SINE Alu -16 295 3 668 204 0 29 chr11 1468047 1468184 -149315369 - FLAM_C SINE Alu 0 133 1 200 322 25 34 chr11 1468203 1468321 -149315232 + MER5A DNA MER1_type 46 162 -27 1820 144 0 20 chr11 1468774 1469072 -149314481 - AluJo SINE Alu -20 292 1 267 217 17 0 chr11 1470738 1470798 -149312755 + MIR SINE MIR 86 146 -62 369 216 11 0 chr11 1472682 1472770 -149310783 + MER45A DNA AcHobo 69 157 -21 236 217 0 0 chr11 1473273 1473319 -149310234 - MIR SINE MIR -110 152 107 261 75 0 0 chr11 1473881 1473921 -149309632 + (CGGGG)n Simple_repeat Simple_repeat 5 44 0 1918 183 40 0 chr11 1476514 1476837 -149306716 + MER1B DNA MER1_type 2 337 0 2286 76 0 20 chr11 1477511 1477812 -149305741 - AluSc SINE Alu -14 295 1 281 156 47 55 chr11 1480574 1480702 -149302851 + (CACCC)n Simple_repeat Simple_repeat 3 129 0 2349 48 0 32 chr11 1482022 1482332 -149301221 - AluY SINE Alu -11 300 1 289 324 133 6 chr11 1483485 1483658 -149299895 - MIR SINE MIR -41 221 27 350 256 87 23 chr11 1484042 1484214 -149299339 + MLT1K LTR MaLR 163 345 -243 1538 150 58 0 chr11 1484294 1484554 -149298999 + AluJb SINE Alu 17 291 -21 208 244 0 0 chr11 1487966 1488011 -149295542 + (CA)n Simple_repeat Simple_repeat 1 45 0 211 243 27 40 chr11 1489128 1489202 -149294351 + MIR SINE MIR 20 92 -116 209 348 211 3 chr11 1492355 1492654 -149290899 + L2 LINE L2 2284 2644 -670 1464 205 166 27 chr11 1495631 1496041 -149287512 + MLT1C LTR MaLR 1 467 0 6057 45 6 0 chr11 1496396 1497212 -149286341 - L1PA6 LINE L1 0 6154 5334 187 223 97 39 chr11 1497248 1497351 -149286202 + L2 LINE L2 1518 1626 -1688 1610 53 18 0 chr11 1497613 1497840 -149285713 + L1PA5 LINE L1 5671 5901 -253 303 251 228 40 chr11 1497929 1498355 -149285198 + L2 LINE L2 2074 2579 -735 292 236 100 18 chr11 1498683 1498793 -149284760 - MIR SINE MIR -27 235 117 342 254 8 31 chr11 1501301 1501431 -149282122 + G-rich Low_complexity Low_complexity 1 127 0 2903 159 24 39 chr11 1502060 1502558 -149280995 + MER39B LTR ERV1 1 490 -163 2519 35 3 7 chr11 1502558 1502868 -149280685 - AluY SINE Alu -2 309 1 2903 159 24 39 chr11 1502868 1502992 -149280561 + MER39B LTR ERV1 490 614 -39 363 326 105 44 chr11 1503719 1504063 -149279490 - L2 LINE L2 -93 3179 2815 245 329 37 0 chr11 1504236 1504318 -149279235 - L2 LINE L2 -5 3308 3224 254 300 348 12 chr11 1504415 1505238 -149278315 - L2 LINE L2 -524 2790 1692 372 241 25 0 chr11 1506694 1506773 -149276780 + MER81 DNA DNA 17 97 -17 234 255 0 0 chr11 1507071 1507118 -149276435 + (TG)n Simple_repeat Simple_repeat 1 47 0 1522 177 65 31 chr11 1507407 1507701 -149275852 - AluJo SINE Alu -8 304 1 1858 142 6 31 chr11 1508555 1508872 -149274681 + AluSx SINE Alu 1 309 -3 521 308 66 31 chr11 1509044 1509271 -149274282 + MIR SINE MIR 21 255 -7 2263 92 10 0 chr11 1509462 1509757 -149273796 + AluSg SINE Alu 1 298 -12 459 95 0 0 chr11 1510022 1510096 -149273457 - MIR SINE MIR -123 139 66 247 215 0 32 chr11 1510617 1510710 -149272843 + GA-rich Low_complexity Low_complexity 3 92 0 181 237 51 0 chr11 1510910 1510969 -149272584 - MIR SINE MIR -61 147 86 380 250 0 0 chr11 1511427 1511511 -149272042 + MIR SINE MIR 68 151 -57 416 323 38 0 chr11 1512994 1513152 -149270401 + MIR SINE MIR 85 248 -14 233 304 48 32 chr11 1513855 1513980 -149269573 + MIR SINE MIR 59 185 -77 1792 163 3 7 chr11 1514163 1514464 -149269089 - AluJb SINE Alu 0 312 13 256 275 75 0 chr11 1514761 1514881 -149268672 - MLT1J2 LTR MaLR -288 162 34 191 295 39 26 chr11 1515042 1515120 -149268433 - L3 LINE CR1 -220 1357 1279 306 73 0 0 chr11 1516392 1516433 -149267120 + (TG)n Simple_repeat Simple_repeat 1 41 0 236 212 26 62 chr11 1516969 1517082 -149266471 + (CCGGG)n Simple_repeat Simple_repeat 2 110 0 206 266 0 0 chr11 1517107 1517171 -149266382 + G-rich Low_complexity Low_complexity 1 64 0 226 217 9 47 chr11 1517209 1517315 -149266238 + C-rich Low_complexity Low_complexity 1 102 0 213 125 62 0 chr11 1517336 1517384 -149266169 + (CGGGG)n Simple_repeat Simple_repeat 3 53 0 25 51 0 0 chr11 1517435 1517474 -149266079 + GC_rich Low_complexity Low_complexity 1 39 0 233 170 0 38 chr11 1517707 1517760 -149265793 + CT-rich Low_complexity Low_complexity 2 52 0 447 278 0 0 chr11 1518255 1518431 -149265122 + (CCCCAG)n Simple_repeat Simple_repeat 3 178 0 223 179 45 15 chr11 1518614 1518681 -149264872 + (CCCGG)n Simple_repeat Simple_repeat 3 71 0 31 44 0 0 chr11 1518886 1518931 -149264622 + GC_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr11 1518955 1518978 -149264575 + GC_rich Low_complexity Low_complexity 1 23 0 39 92 0 0 chr11 1519055 1519164 -149264389 + GC_rich Low_complexity Low_complexity 1 109 0 261 119 0 0 chr11 1519669 1519711 -149263842 + (A)n Simple_repeat Simple_repeat 1 42 0 233 235 176 29 chr11 1521801 1521903 -149261650 + MIR3 SINE MIR 85 201 -7 260 326 132 21 chr11 1522203 1522347 -149261206 - MIR SINE MIR -102 160 1 239 302 52 10 chr11 1522860 1522956 -149260597 - L2 LINE L2 -40 3273 3174 3131 162 34 24 chr11 1523136 1523758 -149259795 - L1MC1 LINE L1 -166 6167 5540 400 341 97 19 chr11 1524023 1524343 -149259210 + MLT1I LTR MaLR 42 386 -23 1762 157 0 41 chr11 1524760 1525078 -149258475 + AluJb SINE Alu 1 305 -7 2188 104 0 0 chr11 1525080 1525377 -149258176 + AluY SINE Alu 1 297 -14 576 299 94 31 chr11 1525753 1525819 -149257734 - MLT1G1 LTR MaLR 0 595 535 2254 87 3 10 chr11 1525819 1526129 -149257424 + AluY SINE Alu 1 308 -3 576 299 94 31 chr11 1526129 1526526 -149257027 - MLT1G1 LTR MaLR -60 535 12 1849 151 3 10 chr11 1526636 1526927 -149256626 + AluJb SINE Alu 21 309 -3 296 283 42 17 chr11 1527184 1527304 -149256249 + (TATATG)n Simple_repeat Simple_repeat 2 124 0 313 289 66 33 chr11 1527394 1527546 -149256007 - L1MC5 LINE L1 -45 7916 7760 859 175 0 0 chr11 1527547 1527690 -149255863 + FLAM_C SINE Alu 1 143 0 252 294 59 12 chr11 1528648 1528733 -149254820 + MIR3 SINE MIR 109 197 -11 954 187 88 75 chr11 1529104 1529170 -149254383 + MLT1A1 LTR MaLR 19 83 -282 1513 173 47 20 chr11 1529170 1529471 -149254082 + AluJo SINE Alu 1 309 -3 2050 126 3 19 chr11 1529472 1529789 -149253764 + AluSx SINE Alu 1 312 0 954 187 88 75 chr11 1529789 1530025 -149253528 + MLT1A1 LTR MaLR 82 327 -38 582 91 0 0 chr11 1530026 1530103 -149253450 + AluSp SINE Alu 56 132 -181 2124 109 3 0 chr11 1530105 1530431 -149253122 + AluSp SINE Alu 1 327 0 251 170 21 0 chr11 1530432 1530479 -149253074 + MLT1A1 LTR MaLR 410 457 0 2141 102 0 57 chr11 1530670 1531002 -149252551 + AluSq SINE Alu 1 313 0 218 265 15 0 chr11 1533590 1533658 -149249895 + (TCCG)n Simple_repeat Simple_repeat 2 70 0 258 105 0 0 chr11 1534587 1534625 -149248928 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 214 200 0 18 chr11 1535185 1535240 -149248313 + T-rich Low_complexity Low_complexity 2 55 0 1976 176 43 5 chr11 1535897 1536273 -149247280 - MLT1B LTR MaLR 0 390 1 196 354 13 0 chr11 1536886 1536965 -149246588 + MIR SINE MIR 45 124 -84 398 304 33 76 chr11 1537401 1537585 -149245968 - L1ME4a LINE L1 -2 6119 5944 24 0 0 0 chr11 1537599 1537623 -149245930 + AT_rich Low_complexity Low_complexity 1 24 0 1758 140 0 29 chr11 1537623 1537901 -149245652 - AluJo SINE Alu -24 288 19 764 186 0 0 chr11 1537917 1538041 -149245512 - FLAM_A SINE Alu -9 124 1 304 345 90 55 chr11 1539293 1539491 -149244062 - HAL1 LINE L1 -1204 1303 1090 1495 177 75 17 chr11 1539491 1539785 -149243768 - AluJb SINE Alu 0 312 2 304 345 90 55 chr11 1539785 1539876 -149243677 - HAL1 LINE L1 -1417 1090 1004 43 20 0 0 chr11 1540374 1540424 -149243129 + GC_rich Low_complexity Low_complexity 1 50 0 23 68 0 0 chr11 1540514 1540558 -149242995 + GC_rich Low_complexity Low_complexity 1 44 0 30 27 0 0 chr11 1540873 1540910 -149242643 + GC_rich Low_complexity Low_complexity 1 37 0 259 121 45 15 chr11 1540949 1541015 -149242538 + (CCGGG)n Simple_repeat Simple_repeat 3 70 0 182 236 91 0 chr11 1541305 1541360 -149242193 + L2 LINE L2 1880 1939 -1375 191 356 11 11 chr11 1543444 1543531 -149240022 - L2 LINE L2 -221 3051 2965 235 302 93 0 chr11 1545544 1545673 -149237880 - LTR48 LTR ERV1 -68 719 579 1771 145 35 10 chr11 1546872 1547161 -149236392 + AluJo SINE Alu 1 296 -16 239 333 21 0 chr11 1547299 1547395 -149236158 - MIR SINE MIR -81 181 84 317 247 6 0 chr11 1548827 1548993 -149234560 + (TG)n Simple_repeat Simple_repeat 1 167 0 198 207 0 0 chr11 1549009 1549067 -149234486 + (TG)n Simple_repeat Simple_repeat 2 59 0 2321 51 27 10 chr11 1550915 1551209 -149232344 + AluY SINE Alu 1 299 -12 230 238 32 16 chr11 1551618 1551681 -149231872 - L2 LINE L2 0 3272 3209 689 321 11 0 chr11 1560334 1560521 -149223032 + MIR SINE MIR 46 234 -28 245 327 154 29 chr11 1561850 1562058 -149221495 + L2 LINE L2 2572 2805 -509 210 372 75 21 chr11 1562191 1562379 -149221174 + L2 LINE L2 3102 3299 -14 1902 147 180 11 chr11 1562962 1563329 -149220224 + Tigger2a DNA MER2_type 4 432 -2 205 299 73 15 chr11 1565511 1565648 -149217905 + L2 LINE L2 2915 3059 -213 217 259 103 52 chr11 1566988 1567162 -149216391 + L2 LINE L2 454 636 -2678 266 299 159 75 chr11 1567327 1567792 -149215761 + L2 LINE L2 2804 3307 -6 285 29 0 0 chr11 1567874 1567908 -149215645 + (TG)n Simple_repeat Simple_repeat 1 34 0 251 210 7 91 chr11 1569046 1569189 -149214364 + (CACGT)n Simple_repeat Simple_repeat 5 135 0 224 202 8 40 chr11 1571578 1571702 -149211851 + G-rich Low_complexity Low_complexity 1 120 0 194 336 58 73 chr11 1571747 1571884 -149211669 - L2 LINE L2 -116 3156 3022 225 441 11 0 chr11 1572139 1572318 -149211235 - MIR SINE MIR -46 216 36 213 261 0 0 chr11 1572409 1572455 -149211098 - MIR3 SINE MIR -54 154 109 516 62 0 83 chr11 1573223 1573368 -149210185 + (TCC)n Simple_repeat Simple_repeat 1 133 0 2346 237 77 46 chr11 1573493 1574487 -149209066 - HAL1 LINE L1 -92 2415 1392 406 315 36 27 chr11 1574494 1574716 -149208837 - HAL1 LINE L1 -1893 614 391 406 275 42 75 chr11 1574765 1575005 -149208548 - HAL1 LINE L1 -2270 237 6 222 384 138 15 chr11 1575078 1575609 -149207944 + L2 LINE L2 1950 2545 -769 571 340 41 16 chr11 1575671 1575986 -149207567 + MLT1J LTR MaLR 41 363 -148 184 268 0 0 chr11 1576508 1576549 -149207004 + L2 LINE L2 3201 3241 -31 267 289 198 0 chr11 1577613 1577734 -149205819 + L2 LINE L2 3119 3263 -9 226 340 178 28 chr11 1578564 1579103 -149204450 + L2 LINE L2 2072 2691 -623 281 233 0 22 chr11 1579134 1579224 -149204329 + (TG)n Simple_repeat Simple_repeat 1 88 0 697 247 142 78 chr11 1579650 1580201 -149203352 - HAL1 LINE L1 -585 1922 1337 352 288 59 13 chr11 1580212 1580448 -149203105 - HAL1 LINE L1 -1244 1263 1017 197 313 119 99 chr11 1580563 1580965 -149202588 + L2 LINE L2 2817 3226 -46 1514 194 110 22 chr11 1580972 1581416 -149202137 - MLT1D LTR MaLR 0 505 23 264 30 0 0 chr11 1582700 1582733 -149200820 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 297 313 144 16 chr11 1582874 1583504 -149200049 + L1 LINE L1 2771 3481 -2665 366 333 165 12 chr11 1583560 1583815 -149199738 + L1 LINE L1 3543 3836 -2310 227 326 63 0 chr11 1584066 1584161 -149199392 + L2 LINE L2 3136 3236 -36 234 62 0 0 chr11 1584166 1584198 -149199355 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 351 167 51 0 chr11 1585313 1585391 -149198162 + MER103 DNA DNA 18 99 -67 271 253 12 0 chr11 1586538 1586621 -149196932 - L2 LINE L2 -339 2974 2891 192 333 200 0 chr11 1588145 1588250 -149195303 + MIR SINE MIR 135 260 -2 342 159 0 0 chr11 1588615 1588684 -149194869 + CT-rich Low_complexity Low_complexity 1 69 0 * 389 239 17 6 chr11 1588673 1588849 -149194704 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 698 208 12 0 chr11 1588860 1589293 -149194260 + (TCCA)n Simple_repeat Simple_repeat 1 438 0 254 235 10 0 chr11 1589309 1589411 -149194142 + (TCCA)n Simple_repeat Simple_repeat 2 104 0 190 372 35 26 chr11 1590147 1590260 -149193293 - L2 LINE L2 -20 3293 3180 325 299 75 21 chr11 1590464 1590705 -149192848 - L2 LINE L2 -427 2887 2634 322 188 35 0 chr11 1590941 1591026 -149192527 + GA-rich Low_complexity Low_complexity 4 91 0 1128 341 85 1 chr11 1592678 1593422 -149190131 + HAL1 LINE L1 977 1782 -725 417 352 20 52 chr11 1593617 1593867 -149189686 + HAL1b LINE L1 573 814 -534 482 144 19 0 chr11 1593982 1594086 -149189467 + HAL1b LINE L1 965 1070 -278 228 67 0 0 chr11 1594216 1594246 -149189307 + (CCCA)n Simple_repeat Simple_repeat 2 31 0 530 229 6 0 chr11 1594247 1594426 -149189127 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 207 69 0 0 chr11 1594679 1594708 -149188845 + (CAAT)n Simple_repeat Simple_repeat 3 31 0 208 410 35 0 chr11 1595221 1595365 -149188188 - MIR SINE MIR -23 239 91 214 319 0 30 chr11 1595496 1595631 -149187922 + G-rich Low_complexity Low_complexity 2 132 0 201 132 0 0 chr11 1596955 1596993 -149186560 + (TCCC)n Simple_repeat Simple_repeat 1 38 0 407 324 91 16 chr11 1597258 1597511 -149186042 - L1ME LINE L1 -311 5810 5539 821 251 5 5 chr11 1597595 1597794 -149185759 - MER58A DNA MER1_type 0 224 26 226 333 0 0 chr11 1598428 1598485 -149185068 + MIR SINE MIR 113 169 -93 320 267 103 0 chr11 1598885 1599001 -149184552 + MIR SINE MIR 15 142 -120 1046 261 46 4 chr11 1601588 1601921 -149181632 + MLT1A2 LTR MaLR 1 444 -23 321 290 73 17 chr11 1602547 1602694 -149180859 - MIR SINE MIR -62 146 5 224 295 71 36 chr11 1603240 1603352 -149180201 + MIR SINE MIR 31 146 -62 276 152 63 13 chr11 1603697 1603855 -149179698 + (CA)n Simple_repeat Simple_repeat 2 167 0 262 0 53 0 chr11 1603879 1603917 -149179636 + (CA)n Simple_repeat Simple_repeat 2 41 0 411 325 90 8 chr11 1604053 1604287 -149179266 + L2 LINE L2 2807 3059 -254 247 279 0 15 chr11 1604344 1604412 -149179141 + C-rich Low_complexity Low_complexity 2 68 0 1016 183 0 0 chr11 1609652 1609816 -149173737 - AluJo/FRAM SINE Alu -12 300 137 466 145 0 0 chr11 1609816 1609885 -149173668 - AluJ/FLAM SINE Alu -243 69 1 318 295 74 20 chr11 1610500 1610649 -149172904 + L2 LINE L2 2848 3004 -309 195 350 36 44 chr11 1612305 1612442 -149171111 - MIR3 SINE MIR -71 137 2 235 208 94 62 chr11 1612543 1612639 -149170914 - MIR SINE MIR -133 129 31 308 381 14 36 chr11 1613884 1614023 -149169530 - L1MC/D LINE L1 -2206 5602 5467 29 0 0 0 chr11 1615333 1615362 -149168191 + AT_rich Low_complexity Low_complexity 1 29 0 1354 186 48 11 chr11 1615366 1615720 -149167833 + Charlie5 DNA MER1_type 2235 2601 -11 1190 308 91 37 chr11 1615723 1617218 -149166335 + L1MEd LINE L1 113 1737 -4573 511 320 96 54 chr11 1617358 1617756 -149165797 + L1MEd LINE L1 1878 3318 -2811 5672 200 41 28 chr11 1617798 1619671 -149163882 + L1MEd LINE L1 3706 5600 -549 1521 283 63 67 chr11 1619674 1620915 -149162638 + L1M4 LINE L1 2558 3793 -2353 436 228 31 6 chr11 1621904 1622059 -149161494 + MIR SINE MIR 61 219 -43 188 151 170 19 chr11 1622110 1622163 -149161390 - MIR3 SINE MIR -52 156 96 258 81 0 0 chr11 1631423 1631460 -149152093 + (TC)n Simple_repeat Simple_repeat 2 38 0 218 358 47 34 chr11 1634605 1634753 -149148800 + MIR3 SINE MIR 34 183 -25 377 236 17 0 chr11 1635699 1635820 -149147733 + MLT1H LTR MaLR 1 143 -406 1966 112 34 0 chr11 1636012 1636281 -149147272 - AluSc SINE Alu -31 278 1 301 172 0 0 chr11 1636290 1636348 -149147205 + MLT1H LTR MaLR 492 549 0 533 261 119 42 chr11 1636644 1636955 -149146598 + MLT1H LTR MaLR 162 496 -53 588 332 160 27 chr11 1636958 1637220 -149146333 + L1ME LINE L1 721 1017 -5053 3577 263 87 76 chr11 1637253 1639315 -149144238 + L1ME LINE L1 2073 4111 -1969 1366 201 82 15 chr11 1639315 1639584 -149143969 + AluJo SINE Alu 1 287 -15 3577 263 87 76 chr11 1639584 1639762 -149143791 + L1ME LINE L1 4111 4286 -1794 782 189 8 0 chr11 1639762 1639894 -149143659 - FLAM_A SINE Alu 0 133 1 3577 263 87 76 chr11 1639894 1640259 -149143294 + L1ME LINE L1 4286 4707 -1373 1966 134 3 15 chr11 1640296 1640625 -149142928 - MER1B DNA MER1_type 0 339 15 471 318 52 20 chr11 1640703 1640955 -149142598 + L1ME LINE L1 4819 5078 -1002 3199 149 43 63 chr11 1641579 1642420 -149141133 + LTR1 LTR ERV1 1 785 0 3840 240 42 37 chr11 1644013 1646366 -149137187 - L1MD1 LINE L1 -13 6229 3753 855 160 0 7 chr11 1646421 1646565 -149136988 + FLAM_C SINE Alu 1 143 0 547 358 47 5 chr11 1646766 1647191 -149136362 - L1ME3A LINE L1 -288 5882 5440 552 301 77 34 chr11 1647383 1647437 -149136116 - L1ME3A LINE L1 -873 5273 5223 1587 224 78 51 chr11 1647437 1647612 -149135941 + MLT1D LTR MaLR 3 172 -333 1563 180 3 32 chr11 1647612 1647895 -149135658 + AluJo SINE Alu 1 275 -37 300 27 0 0 chr11 1647897 1647934 -149135619 + (CAA)n Simple_repeat Simple_repeat 3 39 0 1587 224 78 51 chr11 1647934 1648245 -149135308 + MLT1D LTR MaLR 172 505 0 552 301 77 34 chr11 1648245 1648814 -149134739 - L1ME3A LINE L1 -923 5223 4606 1059 148 64 49 chr11 1648983 1649268 -149134285 - L1M4 LINE L1 -664 5514 5227 470 168 32 0 chr11 1649502 1649597 -149133956 + L1MB7 LINE L1 6035 6132 -52 1578 209 50 47 chr11 1650374 1650738 -149132815 + MLT1A1 LTR MaLR 1 365 0 259 302 20 20 chr11 1650846 1650995 -149132558 + (CAGCT)n Simple_repeat Simple_repeat 4 152 0 201 159 0 0 chr11 1650998 1651042 -149132511 + (CACAA)n Simple_repeat Simple_repeat 3 46 0 931 139 114 0 chr11 1653190 1653348 -149130205 - AluSg/x SINE Alu -11 301 126 2042 58 41 55 chr11 1653348 1653641 -149129912 - AluY SINE Alu -22 289 1 415 271 11 0 chr11 1653677 1653792 -149129761 - MIR SINE MIR -63 145 32 1905 249 44 7 chr11 1656375 1656962 -149126591 + L1MC3 LINE L1 7177 7785 0 2114 120 0 0 chr11 1656979 1657287 -149126266 + AluSx SINE Alu 1 308 0 230 360 9 18 chr11 1657661 1657775 -149125778 + L1M4 LINE L1 4265 4377 -1769 373 347 9 14 chr11 1657846 1658065 -149125488 + L1M4 LINE L1 4479 4696 -1450 341 327 45 0 chr11 1658518 1658628 -149124925 + L2 LINE L2 3199 3313 0 949 199 24 74 chr11 1662113 1662570 -149120983 + MLT1D LTR MaLR 19 501 -4 253 233 47 0 chr11 1662734 1662820 -149120733 + MER113 DNA MER1_type? 50 139 -382 231 293 0 0 chr11 1664783 1664841 -149118712 + L2 LINE L2 3004 3061 -211 1213 226 29 7 chr11 1667226 1667535 -149116018 + MLT1B LTR MaLR 58 373 -17 191 345 17 0 chr11 1668322 1668380 -149115173 - MIR SINE MIR -113 149 91 459 35 0 0 chr11 1669305 1669362 -149114191 + (GA)n Simple_repeat Simple_repeat 1 57 0 300 27 0 0 chr11 1669361 1669398 -149114155 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 222 37 0 0 chr11 1669950 1669977 -149113576 + (TGGGGG)n Simple_repeat Simple_repeat 1 27 0 258 169 34 17 chr11 1670068 1670127 -149113426 - MIR SINE MIR -60 148 89 730 193 76 6 chr11 1672730 1672901 -149110652 + MLT1D LTR MaLR 319 501 -4 409 270 113 0 chr11 1672909 1673068 -149110485 + L2 LINE L2 2525 2701 -613 290 306 187 8 chr11 1673118 1673353 -149110200 + L2 LINE L2 2857 3133 -180 1011 213 157 28 chr11 1673374 1673661 -149109892 + MER2 DNA MER2_type 1 324 -21 187 156 89 44 chr11 1673725 1673770 -149109783 + L2 LINE L2 3223 3269 -3 384 289 19 0 chr11 1673784 1673888 -149109665 - MIR SINE MIR -47 215 110 278 308 108 10 chr11 1675047 1675242 -149108311 - L2 LINE L2 -371 2943 2730 438 291 82 10 chr11 1675416 1675612 -149107941 + LTR33 LTR ERVL 15 224 -297 359 246 164 25 chr11 1675809 1675931 -149107622 - MIR SINE MIR -100 162 24 204 313 30 15 chr11 1679764 1679831 -149103722 - MIR SINE MIR -108 154 87 362 300 196 9 chr11 1680537 1680767 -149102786 + L2 LINE L2 1874 2146 -1168 189 94 0 0 chr11 1683660 1683692 -149099861 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 891 187 123 25 chr11 1683724 1683927 -149099626 - AluJo SINE Alu -76 236 14 203 310 70 30 chr11 1683971 1684071 -149099482 - MIR SINE MIR -89 173 70 197 319 42 0 chr11 1684181 1684253 -149099300 + MER5A DNA MER1_type 67 141 -48 190 329 41 0 chr11 1688637 1688710 -149094843 - L2 LINE L2 -18 3295 3220 309 346 31 25 chr11 1690820 1690979 -149092574 + L2 LINE L2 3113 3272 0 4687 173 34 12 chr11 1691976 1693708 -149089845 + L1MB7 LINE L1 4424 6175 -9 308 286 93 39 chr11 1695340 1695522 -149088031 + MIR SINE MIR 3 194 -14 2251 215 122 8 chr11 1696573 1697080 -149086473 - MLT1F1 LTR MaLR -2 565 1 190 322 46 35 chr11 1697237 1697324 -149086229 + L2 LINE L2 3214 3301 -12 492 297 92 20 chr11 1698443 1698692 -149084861 + L2 LINE L2 2551 2817 -497 190 358 43 12 chr11 1699716 1699878 -149083675 - MIR3 SINE MIR -8 200 34 197 256 23 0 chr11 1700924 1700967 -149082586 + L2 LINE L2 3180 3223 -90 913 295 70 17 chr11 1701375 1701677 -149081876 - MER45C DNA AcHobo -616 337 20 25 51 0 0 chr11 1702405 1702444 -149081109 + GC_rich Low_complexity Low_complexity 1 39 0 250 323 114 30 chr11 1704926 1705093 -149078460 + L2 LINE L2 3119 3299 -14 894 287 42 51 chr11 1705319 1705768 -149077785 + L1M4 LINE L1 3661 4105 -2041 588 224 8 0 chr11 1705860 1705994 -149077559 - Charlie1 DNA MER1_type -4 2757 2623 * 687 218 198 0 chr11 1705978 1706180 -149077373 - Charlie1 DNA MER1_type -2519 242 1 468 349 99 29 chr11 1706274 1707080 -149076473 + L1M4 LINE L1 4308 5170 -976 295 186 29 14 chr11 1707101 1707171 -149076382 + Charlie1 DNA MER1_type 68 138 -2623 438 328 90 16 chr11 1707298 1707554 -149075999 + L1M4 LINE L1 5370 5644 -534 358 310 213 18 chr11 1708049 1708542 -149075011 + L2 LINE L2 2718 3306 -7 920 227 58 5 chr11 1708652 1708859 -149074694 - MER20 DNA MER1_type 0 219 2 232 175 18 53 chr11 1708983 1709040 -149074513 + MLT1K LTR MaLR 155 209 -379 188 327 0 0 chr11 1710363 1710415 -149073138 - L2 LINE L2 0 3313 3262 502 320 85 29 chr11 1710695 1711011 -149072542 - L2 LINE L2 -559 2755 2422 255 277 108 40 chr11 1712840 1712988 -149070565 - MIR SINE MIR -66 196 39 360 0 0 0 chr11 1720661 1720701 -149062852 + (CTCA)n Simple_repeat Simple_repeat 2 41 0 229 356 69 59 chr11 1720703 1721023 -149062530 - L2 LINE L2 -14 3258 2936 288 339 136 0 chr11 1721060 1721237 -149062316 + MIR SINE MIR 62 262 0 2156 167 30 8 chr11 1722283 1722685 -149060868 + L1MD1 LINE L1 5832 6242 0 317 332 52 57 chr11 1722720 1722949 -149060604 + L1MC4a LINE L1 4407 4634 -1512 24 0 0 0 chr11 1722950 1722974 -149060579 + AT_rich Low_complexity Low_complexity 1 24 0 2039 138 7 0 chr11 1722984 1723289 -149060264 + AluSx SINE Alu 1 307 -5 728 265 103 0 chr11 1723683 1723887 -149059666 - MIR SINE MIR -27 235 11 725 371 80 11 chr11 1724597 1725074 -149058479 + L1MC4a LINE L1 4742 5251 -895 621 263 115 7 chr11 1725116 1725386 -149058167 + L1MC4a LINE L1 5326 5624 -2184 259 271 119 25 chr11 1726132 1726250 -149057303 + L1MC4a LINE L1 5738 5866 -1942 234 277 19 69 chr11 1727004 1727163 -149056390 + L1MC4a LINE L1 5879 6029 -1779 243 0 0 0 chr11 1728316 1728343 -149055210 + (T)n Simple_repeat Simple_repeat 1 27 0 210 244 0 0 chr11 1728750 1728791 -149054762 + (CACG)n Simple_repeat Simple_repeat 3 43 0 316 284 52 17 chr11 1730426 1730542 -149053011 + MIR SINE MIR 16 135 -73 328 308 23 30 chr11 1732563 1732696 -149050857 + MIR3 SINE MIR 49 180 -28 183 375 31 10 chr11 1732694 1732790 -149050763 + L2 LINE L2 3167 3264 -8 * 265 342 114 6 chr11 1733411 1733569 -149049984 - MIR SINE MIR -1 261 87 1935 315 77 17 chr11 1733663 1735335 -149048218 + L1ME3A LINE L1 4416 6168 -2 216 356 22 30 chr11 1735919 1736054 -149047499 - MIR3 SINE MIR -72 136 3 272 285 135 89 chr11 1742321 1742693 -149040860 - L1MC/D LINE L1 -746 5400 5209 6528 208 135 53 chr11 1742949 1745018 -149038535 + L1MD3 LINE L1 4975 7486 -509 538 178 16 47 chr11 1745018 1745147 -149038406 + MLT1F1 LTR MaLR 1 125 -442 6528 208 135 53 chr11 1745147 1745672 -149037881 + L1MD3 LINE L1 7486 7966 -29 1357 272 129 29 chr11 1745685 1746649 -149036904 + L1M4 LINE L1 4370 5429 -735 181 227 186 72 chr11 1746852 1746949 -149036604 - MIR SINE MIR -108 154 47 21 0 0 0 chr11 1748054 1748075 -149035478 + AT_rich Low_complexity Low_complexity 1 21 0 274 161 169 97 chr11 1748079 1748203 -149035350 + L1ME4a LINE L1 5961 6093 -28 896 267 91 98 chr11 1749193 1749774 -149033779 + MLT1K LTR MaLR 2 578 -10 240 301 131 31 chr11 1751629 1751858 -149031695 + LTR16C LTR ERVL 42 293 -198 585 316 90 17 chr11 1751953 1752241 -149031312 - L2 LINE L2 -555 2759 2451 8539 184 65 39 chr11 1752594 1754951 -149028602 + L1MA5 LINE L1 1438 3733 -3115 1512 169 48 11 chr11 1754951 1755223 -149028330 - AluJb SINE Alu -30 282 1 8539 184 65 39 chr11 1755223 1756343 -149027210 + L1MA5 LINE L1 3733 5026 -1822 1538 191 38 0 chr11 1756343 1756610 -149026943 + AluJb SINE Alu 5 281 -31 8539 184 65 39 chr11 1756610 1756903 -149026650 + L1MA5 LINE L1 5026 5310 -1538 * 11145 195 53 17 chr11 1756902 1760665 -149022888 + L1MA4A LINE L1 1 4036 -2812 4911 154 72 9 chr11 1760669 1762587 -149020966 + L1MA4A LINE L1 4959 7005 0 1177 202 0 0 chr11 1762596 1762799 -149020754 + AluJo SINE Alu 27 229 -83 40281 54 4 9 chr11 1762800 1768981 -149014572 + L1PA5 LINE L1 2 6149 -5 604 175 0 14 chr11 1769016 1769159 -149014394 + L1MA5 LINE L1 5302 5442 -1406 952 257 13 13 chr11 1769159 1769385 -149014168 - MER8 DNA MER2_type 0 239 14 2972 165 83 6 chr11 1769385 1770471 -149013082 + L1MA5 LINE L1 5449 6602 -400 853 132 25 13 chr11 1770473 1770632 -149012921 + L1MA5 LINE L1 6842 7002 0 1049 193 77 36 chr11 1770656 1770948 -149012605 + L1MB3 LINE L1 4012 4323 -1823 2433 85 0 3 chr11 1770948 1771255 -149012298 - AluY SINE Alu -5 306 1 1049 193 77 36 chr11 1771255 1771325 -149012228 + L1MB3 LINE L1 4323 4389 -1757 311 333 16 32 chr11 1771343 1771469 -149012084 + L1MA9 LINE L1 2154 2277 -5289 2378 267 42 23 chr11 1771471 1772675 -149010878 + L1MA9 LINE L1 2096 3404 -4162 3251 208 23 6 chr11 1772704 1773488 -149010065 + L1MA9 LINE L1 5030 5826 -1739 1339 227 9 9 chr11 1773479 1773823 -149009730 + L1M3 LINE L1 4807 5150 -996 * 4534 166 59 44 chr11 1773823 1775110 -149008443 + L1MA9 LINE L1 5828 7166 -565 1726 179 3 7 chr11 1775110 1775406 -149008147 + AluJo SINE Alu 6 300 -12 4534 166 59 44 chr11 1775406 1775981 -149007572 + L1MA9 LINE L1 7166 7731 0 2624 194 46 101 chr11 1775980 1776329 -149007224 + L1MB3 LINE L1 4392 4759 -1421 * 1555 221 10 0 chr11 1776329 1776623 -149006930 + AluJb SINE Alu 1 297 -15 2624 194 46 101 chr11 1776623 1777288 -149006265 + L1MB3 LINE L1 4759 5328 -852 2278 79 24 0 chr11 1777288 1777578 -149005975 + AluY SINE Alu 1 297 -14 2624 194 46 101 chr11 1777578 1777729 -149005824 + L1MB3 LINE L1 5328 5486 -694 752 224 0 33 chr11 1777743 1777895 -149005658 + AluJb SINE Alu 143 289 -23 3460 168 23 12 chr11 1777903 1778595 -149004958 + L1MB3 LINE L1 5480 6179 -4 1865 180 3 2 chr11 1778615 1779155 -149004398 + L1MC1 LINE L1 5029 5570 -744 587 186 0 17 chr11 1779161 1779279 -149004274 + L1M3 LINE L1 5534 5649 -534 4093 142 13 38 chr11 1779317 1779830 -149003723 + L1MC1 LINE L1 5586 6075 -258 1861 110 190 19 chr11 1779830 1780194 -149003359 - MSTA LTR MaLR -2 426 1 4093 142 13 38 chr11 1780194 1780446 -149003107 + L1MC1 LINE L1 6075 6332 -1 1087 226 51 11 chr11 1780492 1781030 -149002523 + L1MC4a LINE L1 2252 2810 -3572 * 8221 196 68 29 chr11 1781028 1781606 -149001947 + L1MA9 LINE L1 3127 3681 -2867 5157 115 21 53 chr11 1781606 1781879 -149001674 + L1PA16 LINE L1 5151 5431 -735 2215 121 0 3 chr11 1781879 1782233 -149001320 + AluSx SINE Alu 1 312 0 5157 115 21 53 chr11 1782233 1782641 -149000912 + L1PA16 LINE L1 5431 5791 -375 2393 86 3 0 chr11 1782641 1782945 -149000608 + AluSp SINE Alu 1 305 -8 5157 115 21 53 chr11 1782945 1783304 -149000249 + L1PA16 LINE L1 5791 6160 -6 8221 196 68 29 chr11 1783304 1784737 -148998816 + L1MA9 LINE L1 3681 5057 -1491 1225 118 81 5 chr11 1784737 1784948 -148998605 - MER30 DNA MER1_type -3 227 1 8221 196 68 29 chr11 1784948 1786147 -148997406 + L1MA9 LINE L1 5057 6466 -82 26 0 0 0 chr11 1786167 1786193 -148997360 + AT_rich Low_complexity Low_complexity 1 26 0 6844 220 52 46 chr11 1786209 1788735 -148994818 + L1MC4a LINE L1 2811 5351 -1031 336 132 0 0 chr11 1788730 1788783 -148994770 + L1MB5 LINE L1 6084 6136 -38 * 1039 261 126 10 chr11 1789064 1789478 -148994075 + L1MC4a LINE L1 5964 6425 -1619 1784 230 53 93 chr11 1789910 1790740 -148992813 + L1M4 LINE L1 684 1480 -5062 1830 134 124 0 chr11 1790762 1791061 -148992492 - MER1B DNA MER1_type -1 336 1 1107 217 35 67 chr11 1791291 1791645 -148991908 + L1M4 LINE L1 2529 2814 -3830 2065 141 27 0 chr11 1791645 1791944 -148991609 + AluSx SINE Alu 1 307 -5 1107 217 35 67 chr11 1791944 1792159 -148991394 + L1M4 LINE L1 2814 3034 -3610 270 164 0 45 chr11 1792186 1792253 -148991300 - L1M4 LINE L1 -3549 2597 2534 6263 222 40 80 chr11 1792332 1794368 -148989185 + L1MB3 LINE L1 1503 3620 -2627 1222 178 48 96 chr11 1794368 1794682 -148988871 + AluJo SINE Alu 1 299 -3 6263 222 40 80 chr11 1794682 1795447 -148988106 + L1MB3 LINE L1 3620 4415 -1832 2058 165 25 6 chr11 1795447 1795805 -148987748 - MLT1A1 LTR MaLR 0 365 1 6263 222 40 80 chr11 1795805 1795954 -148987599 + L1MB3 LINE L1 4415 4569 -1678 2524 77 0 3 chr11 1795954 1796264 -148987289 + AluY SINE Alu 1 309 -2 6263 222 40 80 chr11 1796264 1796453 -148987100 + L1MB3 LINE L1 4569 4764 -1483 2331 151 57 5 chr11 1796453 1796857 -148986696 - MSTB LTR MaLR 0 426 2 6263 222 40 80 chr11 1796857 1797041 -148986512 + L1MB3 LINE L1 4764 4954 -1293 397 167 52 0 chr11 1797041 1797137 -148986416 + L1MB3 LINE L1 6152 6252 0 6263 222 40 80 chr11 1797137 1798306 -148985247 + L1MB3 LINE L1 4954 5667 -580 2142 101 3 3 chr11 1798315 1798611 -148984942 + AluSg SINE Alu 1 296 -14 1128 172 33 25 chr11 1798624 1798868 -148984685 + L1MB8 LINE L1 5854 6099 -79 689 179 22 8 chr11 1798873 1799007 -148984546 + Tigger1 DNA MER2_type 22 157 -2261 * 1310 105 29 5 chr11 1798996 1799206 -148984347 + Tigger1 DNA MER2_type 2202 2416 -2 503 131 0 0 chr11 1799206 1799290 -148984263 + L1MB8 LINE L1 6095 6178 0 2447 228 37 21 chr11 1799295 1799946 -148983607 + L1MD1 LINE L1 5050 5743 -499 2312 165 65 45 chr11 1799946 1800437 -148983116 - MLT1D LTR MaLR 0 505 5 2447 228 37 21 chr11 1800437 1800937 -148982616 + L1MD1 LINE L1 5743 6234 -8 620 150 55 8 chr11 1800952 1801079 -148982474 + L1M4 LINE L1 5320 5452 -726 1478 285 77 31 chr11 1801214 1801976 -148981577 + L1MC4 LINE L1 7244 8040 -2 875 200 184 0 chr11 1802022 1802207 -148981346 + MER20 DNA MER1_type 1 219 0 2179 162 12 54 chr11 1802356 1802763 -148980790 + MLT1B LTR MaLR 1 390 0 310 321 53 79 chr11 1802769 1803034 -148980519 + L1M4c LINE L1 937 1194 -5190 673 273 41 5 chr11 1803400 1803594 -148979959 - MIR SINE MIR -49 213 13 1536 329 123 38 chr11 1803785 1804676 -148978877 + L1M4c LINE L1 2887 3853 -2529 735 280 76 16 chr11 1804848 1805280 -148978273 - L1MC/D LINE L1 -2039 5769 5312 30 27 0 0 chr11 1805400 1805437 -148978116 + AT_rich Low_complexity Low_complexity 1 37 0 2178 239 28 40 chr11 1805440 1806217 -148977336 - L1ME1 LINE L1 -4 6162 5395 3994 111 12 0 chr11 1806217 1806856 -148976697 - Tigger1 DNA MER2_type -656 1762 1116 357 141 141 13 chr11 1806856 1806934 -148976619 - Tigger1 DNA MER2_type -2330 88 1 616 253 11 0 chr11 1806934 1807120 -148976433 - L1ME1 LINE L1 -1769 4377 4190 1118 310 93 26 chr11 1807123 1808238 -148975315 + L1MEd LINE L1 447 1682 -4628 184 304 87 0 chr11 1809028 1809097 -148974456 + L2 LINE L2 3039 3113 -159 182 204 143 0 chr11 1809347 1809396 -148974157 - L2 LINE L2 -339 2974 2919 287 222 56 0 chr11 1813955 1814027 -148969526 - L2 LINE L2 -307 3006 2931 449 96 0 101 chr11 1817600 1817798 -148965755 + (CA)n Simple_repeat Simple_repeat 2 179 0 282 232 0 0 chr11 1817812 1817976 -148965577 + (CA)n Simple_repeat Simple_repeat 2 165 0 216 234 30 24 chr11 1818066 1818233 -148965320 + (CATA)n Simple_repeat Simple_repeat 2 169 0 231 152 30 15 chr11 1818261 1818327 -148965226 + (CA)n Simple_repeat Simple_repeat 2 68 0 367 221 182 0 chr11 1821769 1821923 -148961630 + Charlie1 DNA MER1_type 2436 2617 -144 27 0 0 0 chr11 1822238 1822265 -148961288 + AT_rich Low_complexity Low_complexity 1 27 0 189 383 11 11 chr11 1824033 1824127 -148959426 + MIR SINE MIR 77 170 -92 274 155 52 0 chr11 1824906 1824964 -148958589 + L2 LINE L2 3006 3066 -206 217 333 0 0 chr11 1825290 1825350 -148958203 - MIR SINE MIR -109 153 94 351 247 137 93 chr11 1826126 1826490 -148957063 + MLT1G1 LTR MaLR 1 380 -10 340 291 10 0 chr11 1828812 1828915 -148954638 - MER45C DNA AcHobo -129 824 721 544 289 0 6 chr11 1828997 1829156 -148954397 - MER45C DNA AcHobo -738 215 58 197 217 66 57 chr11 1830587 1830693 -148952860 - MIR SINE MIR -62 146 40 242 236 79 71 chr11 1832462 1832589 -148950964 + MIR SINE MIR 113 240 -22 2270 101 0 3 chr11 1833122 1833429 -148950124 + AluSg SINE Alu 1 306 -4 279 351 36 0 chr11 1833547 1833658 -148949895 + L2 LINE L2 3199 3313 0 2149 88 0 39 chr11 1833980 1834319 -148949234 - AluSx SINE Alu 0 312 1 206 296 0 0 chr11 1835818 1835872 -148947681 - MIR SINE MIR -114 148 95 2766 214 57 69 chr11 1836806 1837697 -148945856 + L1MB3 LINE L1 5281 6156 -27 2161 101 3 7 chr11 1837697 1837994 -148945559 - AluSx SINE Alu -16 296 1 2766 214 57 69 chr11 1837994 1838022 -148945531 + L1MB3 LINE L1 6156 6183 0 530 227 8 0 chr11 1838051 1838170 -148945383 + L1MB5 LINE L1 6019 6138 -36 205 156 0 0 chr11 1840065 1840097 -148943456 + C-rich Low_complexity Low_complexity 2 33 0 364 295 27 0 chr11 1840690 1840802 -148942751 + MIR SINE MIR 77 191 -71 2401 41 7 3 chr11 1841076 1841371 -148942182 - AluY SINE Alu 0 311 16 254 298 61 35 chr11 1844209 1844407 -148939146 - L1M4 LINE L1 -3240 2906 2704 395 308 35 0 chr11 1844690 1844833 -148938720 + MLT1G1 LTR MaLR 448 595 0 392 352 102 22 chr11 1844892 1845207 -148938346 - L1M4 LINE L1 -3540 2606 2267 866 247 49 45 chr11 1845679 1845902 -148937651 - MER58A DNA MER1_type 0 224 1 1184 192 108 26 chr11 1845938 1846282 -148937271 + MLT1C LTR MaLR 8 379 -88 3429 227 49 115 chr11 1847916 1848290 -148935263 + L1ME1 LINE L1 3398 3795 -2371 2252 94 0 13 chr11 1848290 1848597 -148934956 + AluSq SINE Alu 1 303 -10 3429 227 49 115 chr11 1848597 1848628 -148934925 + L1ME1 LINE L1 3795 3826 -2340 207 0 0 0 chr11 1848628 1848651 -148934902 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 3429 227 49 115 chr11 1848651 1851195 -148932358 + L1ME1 LINE L1 3826 6161 -5 387 304 144 22 chr11 1854143 1854555 -148928998 + L2 LINE L2 2634 3109 -204 1966 134 0 13 chr11 1854772 1855078 -148928475 + AluSx SINE Alu 1 302 -10 2710 232 83 60 chr11 1855182 1855542 -148928011 + L1ME1 LINE L1 2216 2566 -3649 399 100 11 89 chr11 1855542 1855632 -148927921 + L1MA5 LINE L1 6217 6299 -1 2710 232 83 60 chr11 1855632 1856609 -148926944 + L1ME1 LINE L1 2566 3544 -2671 881 271 83 56 chr11 1856837 1858708 -148924845 + L1ME1 LINE L1 3521 5432 -803 1741 165 7 3 chr11 1858708 1859005 -148924548 + AluJo SINE Alu 1 298 -14 881 271 83 56 chr11 1859005 1859827 -148923726 + L1ME1 LINE L1 5432 6230 -5 302 300 0 11 chr11 1860062 1860152 -148923401 - MIR SINE MIR -78 184 96 220 399 14 14 chr11 1861169 1861312 -148922241 + (CGTG)n Simple_repeat Simple_repeat 3 145 0 199 205 0 0 chr11 1861970 1862009 -148921544 - L2 LINE L2 -528 2786 2748 237 304 22 0 chr11 1864166 1864258 -148919295 + L1MC4 LINE L1 7808 7901 -141 1751 174 9 22 chr11 1864265 1864581 -148918972 + AluJb SINE Alu 1 312 0 594 266 85 0 chr11 1864934 1865133 -148918420 - MER58A DNA MER1_type -8 216 1 * 1029 213 16 56 chr11 1865133 1865532 -148918021 + MLT1C LTR MaLR 18 375 -15 268 226 0 0 chr11 1867421 1867474 -148916079 + L2 LINE L2 3261 3313 0 356 354 17 17 chr11 1868631 1868809 -148914744 + (CACG)n Simple_repeat Simple_repeat 1 178 0 188 326 264 4 chr11 1870221 1870482 -148913071 - L2 LINE L2 -351 2963 2635 365 331 11 22 chr11 1871407 1871588 -148911965 + (CA)n Simple_repeat Simple_repeat 2 180 0 255 347 8 8 chr11 1871638 1871759 -148911794 + (CA)n Simple_repeat Simple_repeat 1 121 0 304 272 76 0 chr11 1872210 1872302 -148911251 + L1MB7 LINE L1 3726 3824 -2322 384 390 47 36 chr11 1872878 1873240 -148910313 + L1MB7 LINE L1 4614 4979 -1167 624 303 127 17 chr11 1874476 1874879 -148908674 + L1MB7 LINE L1 5738 6184 0 627 262 63 9 chr11 1878089 1878310 -148905243 - MLT1D LTR MaLR -265 240 8 180 0 0 0 chr11 1878510 1878530 -148905023 + (A)n Simple_repeat Simple_repeat 1 20 0 2147 90 0 37 chr11 1878782 1879105 -148904448 + AluSx SINE Alu 1 311 -1 786 193 86 6 chr11 1881026 1881232 -148902321 + L1MB3 LINE L1 5974 6183 0 286 253 147 7 chr11 1882334 1882484 -148901069 - MLT1D LTR MaLR -290 215 45 929 201 0 5 chr11 1882618 1882825 -148900728 - AluJo SINE Alu 0 312 121 290 163 0 0 chr11 1885545 1885594 -148897959 - MER58A DNA MER1_type -19 88 40 336 280 56 15 chr11 1885977 1886117 -148897436 - MIR SINE MIR -62 146 39 1207 212 58 18 chr11 1886915 1887245 -148896308 + L1PB4 LINE L1 5814 6156 0 2307 46 18 0 chr11 1887447 1887728 -148895825 - AluY SINE Alu -21 290 5 280 356 40 6 chr11 1889696 1889870 -148893683 - MLT1J LTR MaLR -310 201 22 202 328 31 0 chr11 1891141 1891205 -148892348 - L2 LINE L2 -28 3244 3179 234 271 56 28 chr11 1891314 1891421 -148892132 - L2 LINE L2 -309 3004 2895 1727 160 3 30 chr11 1891662 1891962 -148891591 - AluJo SINE Alu -16 296 5 1817 149 0 44 chr11 1891970 1892291 -148891262 - AluJo SINE Alu -2 310 4 334 335 128 33 chr11 1894360 1894993 -148888560 + L2 LINE L2 2023 2715 -599 295 353 35 0 chr11 1895043 1895304 -148888249 + L1MC4a LINE L1 4963 5232 -914 791 280 42 8 chr11 1895316 1895958 -148887595 + L1MC4a LINE L1 5256 5728 -585 561 237 149 0 chr11 1895975 1896169 -148887384 + L1M4 LINE L1 4895 5117 -1029 539 202 0 28 chr11 1896166 1896312 -148887241 - L1M1 LINE L1 -499 5665 5588 * 1940 262 37 34 chr11 1896295 1897056 -148886497 + L1M4 LINE L1 2140 2905 -3241 1168 130 12 0 chr11 1897056 1897225 -148886328 + L1PA10 LINE L1 5998 6168 0 1940 262 37 34 chr11 1897225 1897338 -148886215 + L1M4 LINE L1 2905 3016 -3130 11537 152 20 11 chr11 1897348 1897506 -148886047 - L1MA3 LINE L1 0 7724 7569 1814 166 7 3 chr11 1897506 1897808 -148885745 - AluSx SINE Alu -9 303 1 11537 152 20 11 chr11 1897808 1898578 -148884975 - L1MA3 LINE L1 -155 7569 6808 2654 26 0 3 chr11 1898578 1898888 -148884665 - L1PA4 LINE L1 0 6155 5847 11537 152 20 11 chr11 1898888 1901277 -148882276 - L1MA3 LINE L1 -916 6808 4371 5926 50 1 1 chr11 1901268 1902071 -148881482 - L1PA7 LINE L1 -22 6132 5330 * 343 71 18 0 chr11 1902067 1902123 -148881430 + L1P LINE L1 4448 4504 -1642 * 2136 174 29 37 chr11 1902121 1903105 -148880448 - L1MA3 LINE L1 -3170 4395 3258 28604 110 14 25 chr11 1903108 1905819 -148877734 + L1PA8 LINE L1 6 2744 -3743 2395 97 0 3 chr11 1905819 1906128 -148877425 - AluY SINE Alu -3 308 1 28604 110 14 25 chr11 1906128 1909930 -148873623 + L1PA8 LINE L1 2744 6480 -7 18143 128 79 12 chr11 1909919 1911276 -148872277 - L1MA3 LINE L1 -4282 3283 2019 * 2248 108 30 0 chr11 1911276 1911397 -148872156 + AluSp SINE Alu 1 117 -196 243 0 0 0 chr11 1911397 1911424 -148872129 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2248 108 30 0 chr11 1911424 1911598 -148871955 + AluSp SINE Alu 117 305 -8 18143 128 79 12 chr11 1911598 1913308 -148870245 - L1MA3 LINE L1 -5546 2019 10 9452 193 39 17 chr11 1913304 1915357 -148868196 + L1MB2 LINE L1 3013 5158 -1013 * 2093 135 133 3 chr11 1915357 1915734 -148867819 + MSTB LTR MaLR 1 426 0 9452 193 39 17 chr11 1915734 1916769 -148866784 + L1MB2 LINE L1 5158 6169 -2 4363 279 58 40 chr11 1916765 1917817 -148865736 + L1MC4a LINE L1 5885 6967 -841 * 2243 122 6 3 chr11 1917817 1918128 -148865425 + AluSx SINE Alu 1 312 0 4363 279 58 40 chr11 1918128 1918984 -148864569 + L1MC4a LINE L1 6967 7807 -1 367 351 4 30 chr11 1919005 1919236 -148864317 + L2 LINE L2 2809 3033 -280 481 331 68 11 chr11 1919666 1919932 -148863621 + L1ME4a LINE L1 5538 5818 -303 225 94 0 0 chr11 1920063 1920095 -148863458 + (CA)n Simple_repeat Simple_repeat 1 32 0 369 259 12 0 chr11 1920156 1920241 -148863312 - MIR SINE MIR -65 197 112 3576 126 2 0 chr11 1920266 1920790 -148862763 - MER1A DNA MER1_type -2 525 1 309 250 188 0 chr11 1920937 1921065 -148862488 + L1ME4a LINE L1 5967 6118 -3 1001 286 74 70 chr11 1921257 1921638 -148861915 - L1MC4 LINE L1 -16 8026 7648 2471 102 5 30 chr11 1921638 1922011 -148861542 + THE1B LTR MaLR 1 364 0 11502 86 5 0 chr11 1922011 1923584 -148859969 + THE1B-int LTR MaLR 1 1580 0 2288 126 5 27 chr11 1923584 1923956 -148859597 + THE1B LTR MaLR 1 364 0 1001 286 74 70 chr11 1923956 1924327 -148859226 - L1MC4 LINE L1 -393 7649 7269 242 269 84 34 chr11 1924390 1924509 -148859044 - L1MC4 LINE L1 -912 7130 7006 733 142 45 52 chr11 1924531 1924665 -148858888 - FLAM_C SINE Alu 0 133 1 1998 150 0 7 chr11 1925293 1925593 -148857960 + AluSx SINE Alu 1 298 -14 331 345 54 25 chr11 1925960 1926163 -148857390 - L1M4 LINE L1 -3299 2847 2639 1936 131 68 37 chr11 1926280 1926632 -148856921 - THE1B LTR MaLR -1 363 1 1095 266 62 11 chr11 1926916 1927288 -148856265 + L1MB7 LINE L1 5776 6166 -18 223 186 314 0 chr11 1927317 1927403 -148856150 + MIR SINE MIR 31 143 -119 446 247 6 0 chr11 1929841 1930019 -148853534 + (CA)n Simple_repeat Simple_repeat 1 179 0 384 283 3 0 chr11 1930034 1930354 -148853199 + (CA)n Simple_repeat Simple_repeat 1 321 0 495 269 0 0 chr11 1930401 1930721 -148852832 + (CA)n Simple_repeat Simple_repeat 1 320 0 799 252 91 7 chr11 1931195 1931481 -148852072 + L1ME1 LINE L1 4885 5194 -952 331 155 0 0 chr11 1931481 1931539 -148852014 + AluJo SINE Alu 40 97 -205 2669 172 61 33 chr11 1931539 1932114 -148851439 + LTR59 LTR ERV1 1 591 -6 1129 174 10 0 chr11 1932114 1932310 -148851243 + AluJo SINE Alu 94 291 -21 2370 56 45 0 chr11 1932322 1932608 -148850945 + AluY SINE Alu 1 299 -12 1290 273 124 52 chr11 1932612 1932711 -148850842 + L1ME1 LINE L1 5186 5276 -890 2147 111 3 19 chr11 1932711 1933018 -148850535 + AluSg SINE Alu 1 302 -8 1290 273 124 52 chr11 1933018 1933831 -148849722 + L1ME1 LINE L1 5276 6161 -5 2030 131 0 3 chr11 1933852 1934135 -148849418 + AluJo SINE Alu 18 299 -13 230 258 65 0 chr11 1934221 1934283 -148849270 - MIR SINE MIR -86 176 111 258 284 27 0 chr11 1935440 1935514 -148848039 - MIR SINE MIR -91 171 96 281 239 15 0 chr11 1936013 1936080 -148847473 + MIR3 SINE MIR 90 157 -51 224 246 35 0 chr11 1936717 1936774 -148846779 + MIR SINE MIR 64 122 -86 641 148 9 0 chr11 1937020 1937128 -148846425 + FRAM SINE Alu 62 170 -6 32 67 0 0 chr11 1937903 1937963 -148845590 + AT_rich Low_complexity Low_complexity 1 60 0 186 43 0 0 chr11 1938661 1938684 -148844869 + (CCCCAG)n Simple_repeat Simple_repeat 6 28 0 379 335 12 12 chr11 1940384 1940554 -148842999 + (TCCA)n Simple_repeat Simple_repeat 2 171 0 258 32 0 0 chr11 1941767 1941798 -148841755 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 809 291 83 79 chr11 1943359 1943587 -148839966 - L1MC5 LINE L1 -397 7564 7339 483 33 0 0 chr11 1943587 1943648 -148839905 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 809 291 83 79 chr11 1943648 1944411 -148839142 - L1MC5 LINE L1 -622 7339 6555 5173 176 42 64 chr11 1944488 1945316 -148838237 - L1PA16 LINE L1 -5 6161 5316 2545 49 0 55 chr11 1945316 1945642 -148837911 - AluY SINE Alu -3 308 1 5173 176 42 64 chr11 1945642 1945956 -148837597 - L1PA16 LINE L1 -850 5316 4997 412 158 0 0 chr11 1945956 1946032 -148837521 - AluSg/q SINE Alu -2 311 236 1474 125 0 0 chr11 1946032 1946224 -148837329 - AluSg SINE Alu -118 192 1 5173 176 42 64 chr11 1946224 1946885 -148836668 - L1PA16 LINE L1 -1168 4998 4327 2451 71 3 3 chr11 1946885 1947181 -148836372 + AluY SINE Alu 1 296 -15 5173 176 42 64 chr11 1947181 1947650 -148835903 - L1PA16 LINE L1 -1839 4327 3849 353 320 112 44 chr11 1947825 1948209 -148835344 - L1MC4a LINE L1 -1541 6267 5858 677 209 0 0 chr11 1948213 1948347 -148835206 + FLAM_C SINE Alu 2 135 -8 584 295 153 3 chr11 1948347 1948635 -148834918 - L1MC4a LINE L1 -1946 5862 5532 2456 81 3 0 chr11 1948893 1949190 -148834363 - AluSp SINE Alu -15 298 1 1850 149 30 7 chr11 1950845 1951141 -148832412 + MER1B DNA MER1_type 37 339 0 33 94 0 0 chr11 1956962 1957058 -148826495 + GC_rich Low_complexity Low_complexity 1 96 0 34 55 0 0 chr11 1957281 1957336 -148826217 + GC_rich Low_complexity Low_complexity 1 55 0 218 260 16 31 chr11 1957375 1957502 -148826051 + (CCCCG)n Simple_repeat Simple_repeat 5 129 0 327 85 0 0 chr11 1957519 1957566 -148825987 + (CCCCCG)n Simple_repeat Simple_repeat 4 50 0 284 333 23 11 chr11 1957601 1957775 -148825778 + (CCCCG)n Simple_repeat Simple_repeat 2 177 0 589 327 121 32 chr11 1958973 1959319 -148824234 + L1MC5 LINE L1 4877 5253 -893 826 261 46 25 chr11 1959320 1959604 -148823949 + L1MC5 LINE L1 5255 5544 -2264 487 289 58 0 chr11 1959608 1959816 -148823737 + L1MC5 LINE L1 5585 5804 -2004 405 0 0 0 chr11 1959861 1959906 -148823647 + (TG)n Simple_repeat Simple_repeat 2 46 0 265 232 66 60 chr11 1960095 1960246 -148823307 + L1MC5 LINE L1 6877 7028 -933 2157 109 3 0 chr11 1960294 1960587 -148822966 + AluSq SINE Alu 1 294 -19 184 232 36 0 chr11 1960602 1960658 -148822895 + L3 LINE CR1 588 645 -932 198 71 0 0 chr11 1961507 1961535 -148822018 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 214 274 32 0 chr11 1961538 1961600 -148821953 - L2 LINE L2 -14 3258 3195 5638 120 15 3 chr11 1961953 1963607 -148819946 - L1PA16 LINE L1 -16 6150 4477 1897 157 0 7 chr11 1963607 1963900 -148819653 - AluJb SINE Alu -21 291 1 5638 120 15 3 chr11 1963900 1963975 -148819578 - L1PA16 LINE L1 -1689 4477 4404 1773 185 15 10 chr11 1963978 1964373 -148819180 - L1 LINE L1 -2041 4105 3709 882 206 0 0 chr11 1966477 1966793 -148816760 + (TGGA)n Simple_repeat Simple_repeat 1 316 0 223 220 0 37 chr11 1966820 1966929 -148816624 + (TGGG)n Simple_repeat Simple_repeat 2 106 0 271 182 55 0 chr11 1967123 1967178 -148816375 + L2 LINE L2 3200 3257 -15 762 176 7 22 chr11 1967183 1967319 -148816234 + AluJo SINE Alu 1 134 -178 202 56 19 93 chr11 1967539 1967593 -148815960 + (CA)n Simple_repeat Simple_repeat 1 50 0 323 194 0 58 chr11 1967648 1967839 -148815714 + (CA)n Simple_repeat Simple_repeat 1 180 0 199 187 0 27 chr11 1967872 1967947 -148815606 + (CA)n Simple_repeat Simple_repeat 2 74 0 370 212 6 71 chr11 1968011 1968542 -148815011 + (CA)n Simple_repeat Simple_repeat 1 496 0 438 350 147 3 chr11 1970307 1970647 -148812906 - L2 LINE L2 0 3313 2925 906 164 0 4 chr11 1971331 1971832 -148811721 + (CCA)n Simple_repeat Simple_repeat 2 676 0 744 127 19 45 chr11 1971843 1972005 -148811548 - THE1C LTR MaLR -22 435 195 237 311 27 54 chr11 1972039 1972187 -148811366 - L2 LINE L2 -460 2854 2711 946 130 120 29 chr11 1972311 1972519 -148811034 - THE1C LTR MaLR -148 227 1 375 169 0 56 chr11 1972530 1972672 -148810881 + (CACCAT)n Simple_repeat Simple_repeat 1 134 0 498 192 6 34 chr11 1972699 1973037 -148810516 + (CACCAT)n Simple_repeat Simple_repeat 1 328 0 757 180 6 6 chr11 1973083 1973261 -148810292 + (CCA)n Simple_repeat Simple_repeat 3 180 0 300 296 12 0 chr11 1973262 1973343 -148810210 + (CACCAT)n Simple_repeat Simple_repeat 5 86 0 605 216 0 6 chr11 1973343 1973524 -148810029 + (CCA)n Simple_repeat Simple_repeat 1 180 0 278 244 0 26 chr11 1973541 1973656 -148809897 + (CACCAT)n Simple_repeat Simple_repeat 2 113 0 537 230 0 0 chr11 1973692 1973844 -148809709 + (CCA)n Simple_repeat Simple_repeat 2 153 0 209 307 183 7 chr11 1974066 1974219 -148809334 - MIR SINE MIR -70 192 13 294 303 67 0 chr11 1975523 1975642 -148807911 - MIR SINE MIR -59 149 23 657 271 140 17 chr11 1976759 1977117 -148806436 + MLT1C LTR MaLR 59 460 -7 799 216 104 78 chr11 1977489 1977873 -148805680 - MLT1C LTR MaLR -39 428 35 213 281 56 0 chr11 1979636 1979725 -148803828 - MIR3 SINE MIR -53 155 62 182 228 101 51 chr11 1980866 1980945 -148802608 + MIR SINE MIR 52 134 -74 2003 114 0 48 chr11 1982642 1982957 -148800596 - AluSx SINE Alu -12 300 1 2238 87 0 13 chr11 1984798 1985107 -148798446 - AluY SINE Alu 0 311 7 922 253 139 21 chr11 1985111 1985443 -148798110 - L1MB7 LINE L1 -66 6118 5748 25 31 0 0 chr11 1987576 1987608 -148795945 + GC_rich Low_complexity Low_complexity 1 32 0 957 177 6 0 chr11 1990221 1990385 -148793168 + AluJb SINE Alu 140 304 -8 205 241 24 48 chr11 1990404 1990487 -148793066 + MIR SINE MIR 42 122 -86 180 219 49 0 chr11 1991943 1991984 -148791569 + L2 LINE L2 3269 3311 -2 234 237 17 0 chr11 1994191 1994250 -148789303 + MER81 DNA DNA 53 112 -2 277 250 75 67 chr11 2000879 2000999 -148782554 - MIR SINE MIR -65 143 23 3844 147 165 23 chr11 2003676 2003850 -148779703 + MER4D LTR ERV1 3 151 -752 1666 140 57 18 chr11 2003850 2004129 -148779424 + AluSq SINE Alu 6 295 -18 3844 147 165 23 chr11 2004129 2004743 -148778810 + MER4D LTR ERV1 151 903 0 210 125 16 31 chr11 2011152 2011216 -148772337 + CT-rich Low_complexity Low_complexity 3 65 0 537 256 62 17 chr11 2012122 2012298 -148771255 - MER53 DNA DNA 0 189 6 181 264 38 0 chr11 2012920 2012973 -148770580 + L2 LINE L2 3189 3243 -29 1092 132 0 0 chr11 2014072 2014231 -148769322 + FRAM SINE Alu 1 159 -17 303 316 26 8 chr11 2014976 2015093 -148768460 + MIR SINE MIR 46 164 -98 1266 269 43 38 chr11 2015979 2016579 -148766974 + L1ME2 LINE L1 5254 5853 -311 509 213 19 0 chr11 2016983 2017091 -148766462 + L1MA10 LINE L1 6223 6332 -2 295 168 15 128 chr11 2017739 2017935 -148765618 + (CACCC)n Simple_repeat Simple_repeat 3 176 0 185 333 14 0 chr11 2021497 2021566 -148761987 - MIR SINE MIR -109 153 84 243 213 0 0 chr11 2021818 2021893 -148761660 + (TG)n Simple_repeat Simple_repeat 1 75 0 283 261 7 25 chr11 2022800 2023079 -148760474 + C-rich Low_complexity Low_complexity 1 273 0 233 174 26 70 chr11 2024733 2024848 -148758705 + (CGGG)n Simple_repeat Simple_repeat 3 112 0 22 70 0 0 chr11 2024868 2024911 -148758642 + GC_rich Low_complexity Low_complexity 1 43 0 204 183 50 0 chr11 2025018 2025078 -148758475 + C-rich Low_complexity Low_complexity 2 64 0 198 152 136 91 chr11 2025336 2025402 -148758151 - L2 LINE L2 -177 3095 3027 662 286 130 0 chr11 2026001 2026186 -148757367 + MER3 DNA MER1_type 1 209 0 417 280 57 96 chr11 2026653 2026985 -148756568 - L2 LINE L2 -1 3271 2953 576 219 41 0 chr11 2027995 2028141 -148755412 - MER89 LTR ERV1 -1 558 407 5689 203 27 33 chr11 2028164 2028544 -148755009 + L1MB7 LINE L1 3830 4211 -1973 1936 178 36 22 chr11 2028544 2028904 -148754649 + MLT1A1 LTR MaLR 1 365 0 5689 203 27 33 chr11 2028904 2029537 -148754016 + L1MB7 LINE L1 4211 4846 -1338 872 80 0 0 chr11 2029537 2029649 -148753904 - HY1 scRNA scRNA 0 112 1 5689 203 27 33 chr11 2029649 2029848 -148753705 + L1MB7 LINE L1 4846 5045 -1139 2353 103 0 0 chr11 2029848 2030160 -148753393 + AluSx SINE Alu 1 312 0 5689 203 27 33 chr11 2030160 2030774 -148752779 + L1MB7 LINE L1 5045 5661 -523 414 0 0 0 chr11 2030774 2030820 -148752733 + (TG)n Simple_repeat Simple_repeat 2 47 0 5689 203 27 33 chr11 2030820 2030886 -148752667 + L1MB7 LINE L1 5661 5726 -458 1987 130 0 3 chr11 2030886 2031199 -148752354 - AluSx SINE Alu 0 312 1 5689 203 27 33 chr11 2031199 2031663 -148751890 + L1MB7 LINE L1 5726 6173 -11 2250 87 0 3 chr11 2031678 2031978 -148751575 + AluY SINE Alu 1 299 -12 342 271 92 28 chr11 2032005 2032223 -148751330 - MER89 LTR ERV1 -146 413 182 245 279 0 0 chr11 2032231 2032292 -148751261 - MER89 LTR ERV1 -497 62 2 246 308 132 0 chr11 2032749 2032931 -148750622 - L2 LINE L2 -553 2761 2556 330 270 78 26 chr11 2036062 2036177 -148747376 + L2 LINE L2 3191 3311 -2 764 262 161 0 chr11 2036745 2036993 -148746560 + MSTD LTR MaLR 108 395 -1 609 209 54 106 chr11 2036998 2037036 -148746517 + MER39 LTR ERV1 412 450 -115 2552 124 72 10 chr11 2037036 2037439 -148746114 + MSTA LTR MaLR 1 428 0 609 209 54 106 chr11 2037439 2037541 -148746012 + MER39 LTR ERV1 450 412 -153 2002 110 4 4 chr11 2037541 2037822 -148745731 - AluSx SINE Alu -2 310 30 609 209 54 106 chr11 2037822 2037964 -148745589 + MER39 LTR ERV1 411 559 -6 1304 221 67 38 chr11 2038576 2038996 -148744557 + MLT1C LTR MaLR 36 467 0 534 295 68 31 chr11 2039369 2039694 -148743859 - LTR16A LTR ERVL -27 423 87 1014 126 0 0 chr11 2039782 2039851 -148743702 + (CAGA)n Simple_repeat Simple_repeat 1 236 0 1014 126 0 0 chr11 2039851 2040018 -148743535 + (CAGA)n Simple_repeat Simple_repeat 2 168 0 447 52 0 0 chr11 2040137 2040195 -148743358 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 2340 160 59 30 chr11 2040197 2040691 -148742862 - MLT2B3 LTR ERVL -46 508 1 23866 202 44 31 chr11 2040691 2041268 -148742285 - ERVL-B3 LTR ERVL -7 5757 5189 2478 58 0 3 chr11 2041268 2041579 -148741974 - AluY SINE Alu -1 310 1 23866 202 44 31 chr11 2041579 2043435 -148740118 - ERVL-B3 LTR ERVL -575 5189 3358 2061 111 3 0 chr11 2043435 2043724 -148739829 - AluSx SINE Alu 0 312 23 23866 202 44 31 chr11 2043724 2045679 -148737874 - ERVL-B3 LTR ERVL -2406 3358 1278 3638 133 9 6 chr11 2045679 2046204 -148737349 - MER1A DNA MER1_type 0 527 1 23866 202 44 31 chr11 2046204 2047497 -148736056 - ERVL-B3 LTR ERVL -4486 1278 3 225 163 0 0 chr11 2047502 2047545 -148736008 - ERVL-B3 LTR ERVL -7 513 471 2308 86 0 3 chr11 2047551 2047853 -148735700 + AluSc SINE Alu 1 301 -8 1583 186 32 74 chr11 2047880 2048283 -148735270 - MLT2B3 LTR ERVL -39 515 130 584 204 8 54 chr11 2048283 2048312 -148735241 + MLT1A1 LTR MaLR 1 30 -335 1894 114 48 14 chr11 2048312 2048602 -148734951 - AluSx SINE Alu -12 300 1 584 204 8 54 chr11 2048602 2048763 -148734790 + MLT1A1 LTR MaLR 30 182 -183 482 249 29 23 chr11 2048804 2048977 -148734576 + MLT1A1 LTR MaLR 192 365 0 5513 236 63 44 chr11 2048996 2049193 -148734360 + MSTC-int LTR MaLR 20 212 -1523 2417 57 0 0 chr11 2049193 2049489 -148734064 + AluY SINE Alu 1 296 -15 5513 236 63 44 chr11 2049489 2050975 -148732578 + MSTC-int LTR MaLR 212 1735 0 986 211 133 58 chr11 2050975 2051373 -148732180 + MSTC LTR MaLR 1 428 0 326 137 0 0 chr11 2051373 2051424 -148732129 - MLT2B3 LTR ERVL -424 130 80 2170 153 112 5 chr11 2051424 2051809 -148731744 - MSTB LTR MaLR 0 426 1 10023 169 10 9 chr11 2051809 2053458 -148730095 - MSTB-int LTR MaLR 0 1651 1 1635 168 47 0 chr11 2053499 2053796 -148729757 + AluSx SINE Alu 1 311 -1 968 190 36 0 chr11 2053601 2053797 -148729756 + AluSg/x SINE Alu 110 367 0 323 73 18 18 chr11 2053797 2053852 -148729701 + (GAAAA)n Simple_repeat Simple_repeat 3 180 0 1314 132 83 61 chr11 2053852 2054228 -148729325 - MSTB LTR MaLR -27 401 1 548 92 0 0 chr11 2054228 2054312 -148729241 - MLT2B3 LTR ERVL -470 84 1 2453 161 14 45 chr11 2054313 2054828 -148728725 + MLT2B3 LTR ERVL 55 553 -1 275 367 44 39 chr11 2054883 2055452 -148728101 - HERVL LTR ERVL -342 5312 4741 459 383 27 6 chr11 2055861 2056198 -148727355 - HERVL LTR ERVL -1385 4269 3926 618 217 22 7 chr11 2056403 2056541 -148727012 - MLT2B1 LTR ERVL -50 470 331 2138 141 39 0 chr11 2056590 2056974 -148726579 + MSTB1 LTR MaLR 34 432 0 1026 213 17 0 chr11 2056974 2057202 -148726351 - MLT2B1 LTR ERVL -288 232 1 1775 292 86 15 chr11 2057241 2057841 -148725712 - HERVL LTR ERVL -2639 2357 1696 2297 156 34 3 chr11 2057841 2058219 -148725334 - MLT1B LTR MaLR 0 390 1 1775 292 86 15 chr11 2058219 2058340 -148725213 - HERVL LTR ERVL -3300 1696 1585 953 152 25 15 chr11 2058397 2058592 -148724961 - THE1C LTR MaLR 0 375 178 854 106 194 12 chr11 2058593 2058763 -148724790 + MSTA LTR MaLR 228 428 0 1123 158 0 0 chr11 2058764 2058929 -148724624 + FRAM SINE Alu 2 166 0 1275 181 39 11 chr11 2058931 2059213 -148724340 + MLT1B LTR MaLR 98 387 -3 593 185 86 0 chr11 2059561 2059712 -148723841 + MLT2B2 LTR ERVL 1 164 -351 2823 94 163 16 chr11 2059713 2060265 -148723288 - LTR10E LTR ERV1 0 633 1 2816 247 9 9 chr11 2060421 2061180 -148722373 - LTR10E-int LTR ERV1 -738 5911 3345 4449 128 33 27 chr11 2061242 2062062 -148721491 - LTR10E-int LTR ERV1 -3912 2984 2160 277 244 39 13 chr11 2062066 2062144 -148721409 + LTR8 LTR ERV1 156 235 -456 981 35 0 7 chr11 2062144 2062287 -148721266 - Harlequin LTR ERV1 -5168 1728 1587 4141 51 7 28 chr11 2062288 2062515 -148721038 - LTR10C LTR ERV1 0 591 361 3514 57 2 13 chr11 2062515 2062968 -148720585 - LTR7 LTR ERV1 -2 448 1 4141 51 7 28 chr11 2062968 2063086 -148720467 - LTR10C LTR ERV1 -230 361 242 1368 199 102 60 chr11 2063086 2063518 -148720035 + LTR7 LTR ERV1 1 450 0 4141 51 7 28 chr11 2063518 2063775 -148719778 - LTR10C LTR ERV1 -349 242 1 3378 172 46 54 chr11 2063775 2064684 -148718869 - LTR10E-int LTR ERV1 -3397 4388 953 723 260 0 6 chr11 2064665 2064846 -148718707 - LTR10E-int LTR ERV1 -4468 3317 3138 * 1219 165 93 8 chr11 2064837 2065277 -148718276 - LTR10E-int LTR ERV1 -3955 2694 840 999 234 55 64 chr11 2065495 2066028 -148717525 - LTR10E-int LTR ERV1 -6335 314 3 2310 107 153 20 chr11 2066046 2066504 -148717049 - LTR10E LTR ERV1 -43 590 72 511 73 0 12 chr11 2067165 2067247 -148716306 - LTR10E LTR ERV1 -549 84 4 924 292 111 37 chr11 2067260 2067692 -148715861 + L1M4 LINE L1 4408 4871 -1275 2074 112 3 0 chr11 2067693 2068002 -148715551 + AluSg SINE Alu 1 310 0 6346 62 16 73 chr11 2068796 2070504 -148713049 - SVA Other Other -683 1386 57 387 41 0 0 chr11 2070504 2070553 -148713000 + (GGGAGA)n Simple_repeat Simple_repeat 1 49 0 993 229 121 36 chr11 2070574 2070625 -148712928 + MLT2B1 LTR ERVL 160 205 -315 2092 161 83 14 chr11 2070625 2071046 -148712507 + LTR7 LTR ERV1 1 450 0 993 229 121 36 chr11 2071046 2071326 -148712227 + MLT2B1 LTR ERVL 205 519 -1 224 311 0 0 chr11 2071718 2071792 -148711761 + L2 LINE L2 1000 1073 -2241 1812 137 0 0 chr11 2071810 2072072 -148711481 - AluSx SINE Alu -10 302 41 246 217 0 0 chr11 2072076 2072122 -148711431 + MSTD LTR MaLR 224 269 -127 289 136 0 0 chr11 2072130 2072174 -148711379 - AluSx SINE Alu -258 44 1 665 224 61 0 chr11 2072185 2072332 -148711221 - MER5A DNA MER1_type -26 163 8 470 208 42 76 chr11 2072478 2072622 -148710931 - MLT1J2 LTR MaLR -292 158 20 240 234 16 31 chr11 2073011 2073075 -148710478 - MLT1I LTR MaLR 0 409 347 1294 200 134 45 chr11 2073567 2073902 -148709651 + MLT1A1 LTR MaLR 1 365 0 3851 246 77 44 chr11 2073902 2074476 -148709077 + MLT1A1-int LTR MaLR 1 554 -1097 1579 57 0 0 chr11 2074476 2074670 -148708883 + L1PA4 LINE L1 5962 6155 0 3851 246 77 44 chr11 2074670 2075491 -148708062 + MLT1A1-int LTR MaLR 554 1446 -205 7050 180 66 19 chr11 2075491 2075892 -148707661 - ERVL LTR ERVL -2012 3752 3371 2157 132 50 19 chr11 2075892 2076256 -148707297 + THE1C LTR MaLR 1 375 0 7050 180 66 19 chr11 2076256 2077351 -148706202 - ERVL LTR ERVL -2393 3371 2185 2596 165 66 23 chr11 2077351 2077474 -148706079 + Tigger3b DNA MER2_type 1 117 -2911 2944 88 0 3 chr11 2077474 2077850 -148705703 - THE1C LTR MaLR 0 375 1 2596 165 66 23 chr11 2077850 2078290 -148705263 + Tigger3b DNA MER2_type 117 588 -643 7763 116 10 9 chr11 2078296 2080463 -148703090 - L1PA11 LINE L1 -21 6153 3979 767 100 0 27 chr11 2080463 2080573 -148702980 - U6 snRNA snRNA 0 107 1 201 40 0 100 chr11 2082616 2082666 -148700887 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 315 0 0 0 chr11 2082669 2082689 -148700864 + (CA)n Simple_repeat Simple_repeat 1 55 0 315 0 0 0 chr11 2082689 2082724 -148700829 + (CA)n Simple_repeat Simple_repeat 2 36 0 1159 128 0 0 chr11 2082743 2082907 -148700646 - AluSg/x SINE Alu -15 297 134 2065 111 0 20 chr11 2082907 2083236 -148700317 - AluSq SINE Alu 0 313 1 1732 142 4 25 chr11 2083238 2083519 -148700034 - AluJo SINE Alu -16 296 22 2067 157 23 0 chr11 2083847 2084190 -148699363 + L1MB3 LINE L1 5826 6176 -7 833 270 34 0 chr11 2084242 2084505 -148699048 + MLT1E2 LTR MaLR 355 626 0 211 273 0 0 chr11 2087079 2087134 -148696419 + G-rich Low_complexity Low_complexity 5 59 0 902 114 0 50 chr11 2088113 2088253 -148695300 - FLAM_C SINE Alu 0 133 1 318 265 128 0 chr11 2088253 2088355 -148695198 + MER45A DNA AcHobo 64 178 0 206 269 64 13 chr11 2089308 2089386 -148694167 + L2 LINE L2 2981 3062 -210 307 128 58 0 chr11 2090202 2090288 -148693265 + (CCCTG)n Simple_repeat Simple_repeat 4 94 0 323 179 0 0 chr11 2091597 2091653 -148691900 - MIR SINE MIR -63 145 90 549 164 0 53 chr11 2095217 2095406 -148688147 + CT-rich Low_complexity Low_complexity 1 179 0 466 209 11 33 chr11 2095388 2095570 -148687983 + C-rich Low_complexity Low_complexity 1 178 0 * 288 77 0 0 chr11 2095707 2095746 -148687807 + (TC)n Simple_repeat Simple_repeat 1 39 0 423 165 0 0 chr11 2096219 2096304 -148687249 + (CA)n Simple_repeat Simple_repeat 2 86 0 240 111 0 0 chr11 2100148 2100184 -148683369 + (TCCCC)n Simple_repeat Simple_repeat 2 37 0 220 324 23 17 chr11 2101924 2102100 -148681453 + (CCCCG)n Simple_repeat Simple_repeat 2 178 0 * 488 231 29 0 chr11 2101992 2102216 -148681337 + (CACCC)n Simple_repeat Simple_repeat 1 230 0 206 222 99 0 chr11 2102407 2102488 -148681065 + (CATG)n Simple_repeat Simple_repeat 4 92 0 1414 204 33 84 chr11 2104165 2104558 -148678995 + MLT1A2 LTR MaLR 2 374 0 228 67 0 0 chr11 2104566 2104596 -148678957 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 2710 262 58 8 chr11 2105646 2106372 -148677181 + ERVL LTR ERVL 1823 2584 -3180 1959 169 66 3 chr11 2106382 2106761 -148676792 - L1MC2 LINE L1 -14 6330 5928 1977 248 71 8 chr11 2106816 2107308 -148676245 + ERVL LTR ERVL 3066 3588 -2176 1470 254 32 28 chr11 2107292 2107729 -148675824 + ERVL LTR ERVL 3795 4233 -1531 * 2449 298 70 18 chr11 2107940 2108942 -148674611 + ERVL LTR ERVL 4516 5569 -195 2275 95 20 0 chr11 2108942 2109248 -148674305 + AluSx SINE Alu 1 312 0 21 0 0 0 chr11 2109315 2109336 -148674217 + AT_rich Low_complexity Low_complexity 1 21 0 275 302 32 8 chr11 2109365 2109491 -148674062 + ERVL LTR ERVL 5590 5718 -46 481 188 52 155 chr11 2109513 2109726 -148673827 + L1MB7 LINE L1 5913 6103 -75 599 155 10 0 chr11 2110780 2110883 -148672670 + L1MB7 LINE L1 6070 6173 -11 1629 181 22 16 chr11 2111838 2112158 -148671395 - L1MB3 LINE L1 0 6183 5862 226 291 58 0 chr11 2112227 2112313 -148671240 + L2 LINE L2 2615 2705 -609 2340 68 0 0 chr11 2112454 2112747 -148670806 + AluY SINE Alu 1 293 -18 258 288 7 14 chr11 2112767 2112913 -148670640 + (TG)n Simple_repeat Simple_repeat 1 145 0 401 252 49 0 chr11 2113361 2113484 -148670069 - L1MC4 LINE L1 0 8042 7914 739 341 41 0 chr11 2113516 2113885 -148669668 - L1MEc LINE L1 -5454 942 559 399 264 41 8 chr11 2113928 2114049 -148669504 - L1MEc LINE L1 -5915 481 357 504 209 17 0 chr11 2114051 2114223 -148669330 + CT-rich Low_complexity Low_complexity 2 176 0 268 298 26 0 chr11 2114256 2114370 -148669183 - L1MEc LINE L1 -6012 384 268 747 233 142 0 chr11 2114570 2114810 -148668743 - L1MC4a LINE L1 -500 7308 7035 8298 58 2 5 chr11 2114914 2115923 -148667630 + LTR13 LTR ERVK 2 1007 0 1476 184 32 0 chr11 2116142 2116420 -148667133 + AluJo SINE Alu 1 287 -25 287 347 150 16 chr11 2116677 2117063 -148666490 + HAL1 LINE L1 1227 1664 -843 239 327 36 42 chr11 2117103 2117268 -148666285 - L1M4 LINE L1 -1452 4694 4531 333 350 38 25 chr11 2117368 2117528 -148666025 + L1 LINE L1 4685 4846 -1300 817 194 0 48 chr11 2117539 2117704 -148665849 + AluJo SINE Alu 126 282 -30 274 107 53 13 chr11 2117720 2117795 -148665758 + (TA)n Simple_repeat Simple_repeat 2 79 0 6439 249 80 12 chr11 2117967 2120176 -148663377 - L1MEc LINE L1 -1493 4722 2364 629 219 29 7 chr11 2120190 2120327 -148663226 - MLT1F1 LTR MaLR -9 558 419 1101 161 8 42 chr11 2120328 2120564 -148662989 + MER96B DNA MER1_type? 190 417 0 3105 243 45 52 chr11 2120614 2121519 -148662034 - L1MEc LINE L1 -4002 2394 1485 2810 155 73 2 chr11 2121519 2122023 -148661530 - L1MB3 LINE L1 -1 6182 5643 3105 243 45 52 chr11 2122023 2122079 -148661474 - L1MEc LINE L1 -4911 1485 1430 207 100 0 0 chr11 2122079 2122109 -148661444 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 3105 243 45 52 chr11 2122109 2122145 -148661408 - L1MEc LINE L1 -4966 1430 1395 1993 125 3 0 chr11 2122145 2122433 -148661120 + AluSp SINE Alu 22 310 -3 3105 243 45 52 chr11 2122433 2122806 -148660747 - L1MEc LINE L1 -5001 1395 1031 2319 277 67 26 chr11 2123057 2123981 -148659572 - L1MEc LINE L1 -5413 983 22 189 248 99 30 chr11 2124383 2124484 -148659069 - MIR3 SINE MIR -18 190 83 251 301 29 19 chr11 2124679 2124782 -148658771 + MIR SINE MIR 43 146 -62 2064 197 84 12 chr11 2124801 2125313 -148658240 - MER74A LTR ERVL -2 556 8 905 202 37 24 chr11 2125348 2125618 -148657935 + MER33 DNA MER1_type 2 325 -38 182 163 70 0 chr11 2126207 2126250 -148657303 - L2 LINE L2 -211 3061 3016 483 241 0 19 chr11 2126657 2126765 -148656788 + MER58B DNA MER1_type 6 111 -230 1307 162 5 0 chr11 2126806 2127028 -148656525 + AluSg/x SINE Alu 85 307 -5 3430 209 20 7 chr11 2127030 2127727 -148655826 + L1MB3 LINE L1 5476 6181 -2 453 262 152 5 chr11 2127732 2127923 -148655630 + MER58B DNA MER1_type 123 341 0 1411 232 135 18 chr11 2128029 2128465 -148655088 - L1MB7 LINE L1 -9 6970 6484 242 241 89 13 chr11 2129070 2129149 -148654404 + MLT1H1 LTR MaLR 466 550 -5 207 325 0 0 chr11 2131093 2131176 -148652377 + G-rich Low_complexity Low_complexity 6 88 0 21 0 0 0 chr11 2132488 2132509 -148651044 + GC_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr11 2132603 2132644 -148650909 + GC_rich Low_complexity Low_complexity 1 41 0 281 338 157 12 chr11 2134952 2135372 -148648181 - L1MC5 LINE L1 -130 7831 7351 592 309 98 21 chr11 2135455 2135740 -148647813 + LTR16B LTR ERVL 144 450 -14 1230 101 62 0 chr11 2135968 2136147 -148647406 - MER107 DNA MER1_type 0 197 8 2740 231 66 71 chr11 2136452 2137287 -148646266 - MER45B DNA AcHobo -624 957 126 834 139 8 0 chr11 2137287 2137416 -148646137 + FLAM_C SINE Alu 1 130 -3 2740 231 66 71 chr11 2137416 2137518 -148646035 - MER45B DNA AcHobo -1455 126 25 1144 180 70 22 chr11 2139276 2139556 -148643997 - MLT1B LTR MaLR -4 370 60 250 253 81 20 chr11 2141210 2141309 -148642244 - MIR SINE MIR -114 148 44 334 320 53 53 chr11 2142674 2142918 -148640635 - L1ME3 LINE L1 -32 6130 5887 303 179 0 45 chr11 2143426 2143493 -148640060 + L1PA11 LINE L1 6109 6172 -2 2588 36 0 0 chr11 2143785 2144093 -148639460 - AluY SINE Alu -3 308 1 397 240 6 6 chr11 2144836 2145007 -148638546 + (CA)n Simple_repeat Simple_repeat 2 172 0 242 274 78 0 chr11 2145174 2145276 -148638277 - L1MB7 LINE L1 -774 6365 6256 987 212 31 16 chr11 2145381 2145717 -148637836 - L1MB7 LINE L1 -746 6195 5884 424 196 55 8 chr11 2145724 2145893 -148637660 + MER20 DNA MER1_type 7 219 0 2705 234 66 57 chr11 2145898 2146854 -148636699 - L1MB7 LINE L1 -1070 5871 4902 2361 44 14 14 chr11 2146854 2147151 -148636402 + AluY SINE Alu 3 299 -12 2705 234 66 57 chr11 2147151 2147351 -148636202 - L1MB7 LINE L1 -2039 4902 4705 * 3008 263 50 46 chr11 2147335 2147699 -148635854 - L1MB7 LINE L1 -3644 3297 2936 916 205 0 6 chr11 2147699 2147860 -148635693 - FRAM SINE Alu -6 160 1 3008 263 50 46 chr11 2147860 2148704 -148634849 - L1MB7 LINE L1 -4005 2936 2097 2032 89 64 0 chr11 2148704 2148985 -148634568 + AluSq SINE Alu 1 299 -14 3008 263 50 46 chr11 2148985 2149507 -148634046 - L1MB7 LINE L1 -4844 2097 1579 1671 176 3 22 chr11 2149507 2149820 -148633733 - AluJo SINE Alu -5 307 1 3008 263 50 46 chr11 2149820 2149861 -148633692 - L1MB7 LINE L1 -5362 1579 1540 2200 67 3 3 chr11 2149861 2150187 -148633366 - AluSc SINE Alu 0 326 1 3008 263 50 46 chr11 2150187 2150644 -148632909 - L1MB7 LINE L1 -5401 1540 865 606 290 90 33 chr11 2150915 2151280 -148632273 - L1MCc LINE L1 -6014 409 24 259 232 18 0 chr11 2152304 2152360 -148631193 - LTR16A1 LTR ERVL -2 455 399 425 297 148 5 chr11 2152403 2152605 -148630948 - LTR16A1 LTR ERVL -225 232 2 773 371 59 19 chr11 2153161 2153834 -148629719 - HERVL LTR ERVL -1821 3833 3134 1196 303 27 13 chr11 2153847 2154220 -148629333 - HERVL LTR ERVL -2127 2869 2492 497 302 40 31 chr11 2154244 2154466 -148629087 - HERVL LTR ERVL -3228 2536 2313 2769 233 42 50 chr11 2154468 2154534 -148629019 - L1ME1 LINE L1 -5 6144 6079 2169 112 3 6 chr11 2154534 2154847 -148628706 - AluSx SINE Alu 0 312 1 2769 233 42 50 chr11 2154847 2156606 -148626947 - L1ME1 LINE L1 -70 6079 4327 910 245 121 13 chr11 2156610 2156924 -148626629 - L1ME1 LINE L1 -1887 4242 3895 633 270 23 0 chr11 2156930 2157094 -148626459 + MLT2D LTR ERVL 1 168 -246 950 171 77 13 chr11 2157094 2157425 -148626128 - MSTB1 LTR MaLR 0 457 8 1510 118 41 0 chr11 2157425 2157646 -148625907 + MER30 DNA MER1_type 1 230 0 646 236 99 17 chr11 2157655 2157846 -148625707 + MLT2D LTR ERVL 163 378 -36 312 27 0 0 chr11 2157846 2157883 -148625670 + (CA)n Simple_repeat Simple_repeat 1 37 0 646 236 99 17 chr11 2157883 2157924 -148625629 + MLT2D LTR ERVL 378 414 0 1604 259 44 16 chr11 2157932 2158638 -148624915 - L1ME1 LINE L1 -2240 3889 3164 264 252 9 28 chr11 2162898 2163005 -148620548 + (GGGTG)n Simple_repeat Simple_repeat 2 106 0 300 231 51 0 chr11 2265604 2265682 -148517871 + AluJ/FRAM SINE Alu 217 298 -4 2127 127 3 0 chr11 2265687 2265994 -148517559 + AluSp SINE Alu 2 309 -4 231 62 0 62 chr11 2265994 2266042 -148517511 - L1MC/D LINE L1 -478 5855 5811 262 305 169 17 chr11 2266069 2266364 -148517189 - L1ME1 LINE L1 -4880 1239 900 2304 88 0 22 chr11 2266385 2266705 -148516848 - AluSq SINE Alu 0 313 1 227 277 72 0 chr11 2266827 2266910 -148516643 + L2 LINE L2 3225 3313 0 285 348 85 20 chr11 2267013 2267318 -148516235 - L1ME1 LINE L1 -5581 538 214 240 195 11 46 chr11 2267327 2267414 -148516139 + CT-rich Low_complexity Low_complexity 3 86 0 943 183 9 163 chr11 2267537 2267886 -148515667 - MER82 DNA MER2_type -314 339 45 2244 97 0 25 chr11 2267995 2268314 -148515239 - AluSx SINE Alu -1 311 1 316 377 47 19 chr11 2268421 2268687 -148514866 - L1M4c LINE L1 -2946 3436 2258 1716 186 0 7 chr11 2268711 2269018 -148514535 + AluJb SINE Alu 1 305 -7 1707 119 43 61 chr11 2269054 2269399 -148514154 + THE1C LTR MaLR 1 339 -36 465 133 0 0 chr11 2269399 2269474 -148514079 + (TCCC)n Simple_repeat Simple_repeat 3 77 0 304 246 100 9 chr11 2269596 2269706 -148513847 - MIR SINE MIR -58 150 31 187 294 59 0 chr11 2270368 2270419 -148513134 - L2 LINE L2 -608 2706 2653 816 196 0 0 chr11 2270524 2270703 -148512850 + (CAT)n Simple_repeat Simple_repeat 1 179 0 383 146 0 0 chr11 2270703 2270758 -148512795 + (CCA)n Simple_repeat Simple_repeat 3 57 0 990 176 0 0 chr11 2270758 2271087 -148512466 + (CAT)n Simple_repeat Simple_repeat 1 329 0 210 250 9 18 chr11 2271464 2271576 -148511977 + G-rich Low_complexity Low_complexity 2 112 0 263 313 0 30 chr11 2271576 2271675 -148511878 + GA-rich Low_complexity Low_complexity 4 99 0 2877 89 91 0 chr11 2272595 2273012 -148510541 + L1PA13 LINE L1 5708 6162 -1 385 181 0 36 chr11 2273047 2273130 -148510423 - L1M3 LINE L1 -469 5714 5635 1097 110 7 0 chr11 2273281 2273436 -148510117 - AluSq SINE Alu -157 156 1 282 136 153 0 chr11 2273436 2273495 -148510058 - L1MA8 LINE L1 -185 6106 6039 245 167 0 0 chr11 2273496 2273550 -148510003 - L1M3 LINE L1 -537 5646 5593 933 72 8 0 chr11 2273591 2273716 -148509837 + AluSp/q SINE Alu 188 313 0 4915 155 38 21 chr11 2273721 2273901 -148509652 - L1MA8 LINE L1 -10 6281 6105 1954 109 38 0 chr11 2273901 2274194 -148509359 - AluSx SINE Alu -4 308 5 4915 155 38 21 chr11 2274194 2275177 -148508376 - L1MA8 LINE L1 -186 6105 5106 857 163 59 50 chr11 2275170 2275391 -148508162 - L1M3 LINE L1 -576 5607 5385 * 830 130 0 23 chr11 2275396 2275527 -148508026 - FLAM_C SINE Alu -1 142 15 419 101 0 0 chr11 2275541 2275620 -148507933 - L1M3 LINE L1 -785 5395 5317 447 98 16 0 chr11 2275756 2275817 -148507736 - AluJ/FLAM SINE Alu -238 74 13 910 297 100 96 chr11 2275820 2276023 -148507530 - L1M4 LINE L1 -2849 3297 3096 2387 80 0 0 chr11 2276023 2276323 -148507230 - AluSg SINE Alu -9 301 2 910 297 100 96 chr11 2276323 2276582 -148506971 - L1M4 LINE L1 -3050 3096 2840 1968 139 0 0 chr11 2276582 2276870 -148506683 - AluJo SINE Alu -13 299 12 910 297 100 96 chr11 2276870 2277143 -148506410 - L1M4 LINE L1 -3306 2840 2558 2219 113 0 0 chr11 2277354 2277655 -148505898 - AluSx SINE Alu -6 306 6 2495 171 41 13 chr11 2278142 2278609 -148504944 + L1MA4 LINE L1 5810 6289 -11 8726 42 2 1 chr11 2279674 2280680 -148502873 + LTR13 LTR ERVK 1 1007 0 327 321 66 63 chr11 2282835 2283553 -148500000 + L1MEd LINE L1 704 1457 -4853 2060 116 0 38 chr11 2284859 2285179 -148498374 + AluSx SINE Alu 1 308 -4 1243 216 95 28 chr11 2285237 2285546 -148498007 - MLT1C LTR MaLR -52 415 73 2037 147 0 3 chr11 2285546 2285859 -148497694 + AluJb SINE Alu 1 312 0 1243 216 95 28 chr11 2285859 2285938 -148497615 - MLT1C LTR MaLR -394 73 1 1243 174 89 0 chr11 2286471 2286742 -148496811 - MLT1C LTR MaLR -2 430 170 26 0 0 27 chr11 2286745 2286758 -148496795 + AT_rich Low_complexity Low_complexity 1 13 -23 2234 77 7 0 chr11 2286758 2287045 -148496508 + AluSp SINE Alu 1 289 -24 26 0 0 27 chr11 2287045 2287068 -148496485 + AT_rich Low_complexity Low_complexity 13 36 0 204 40 0 0 chr11 2287071 2287096 -148496457 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 897 162 7 13 chr11 2287098 2287252 -148496301 - FRAM SINE Alu -30 146 1 751 118 77 29 chr11 2287252 2287422 -148496131 - MLT1C LTR MaLR -289 178 1 867 158 0 0 chr11 2287627 2287760 -148495793 - AluSq/x SINE Alu -179 133 1 1633 141 20 0 chr11 2288856 2289111 -148494442 - AluJo SINE Alu -35 277 18 213 218 18 0 chr11 2291429 2291484 -148492069 + (CAGCC)n Simple_repeat Simple_repeat 2 57 0 756 134 0 0 chr11 2294594 2294728 -148488825 + (TGGA)n Simple_repeat Simple_repeat 1 134 0 977 134 6 0 chr11 2294743 2294915 -148488638 + (TGGA)n Simple_repeat Simple_repeat 2 174 0 287 283 0 7 chr11 2296993 2297138 -148486415 + (CA)n Simple_repeat Simple_repeat 1 144 0 198 333 42 21 chr11 2297741 2297837 -148485716 + MIR SINE MIR 47 144 -64 904 224 97 21 chr11 2298013 2298405 -148485148 + MLT1C LTR MaLR 7 466 -1 464 293 67 67 chr11 2299082 2299457 -148484096 - MER113 DNA MER1_type? -83 438 64 660 264 42 10 chr11 2300168 2300379 -148483174 + MIR SINE MIR 42 261 -1 1523 150 24 53 chr11 2301761 2301864 -148481689 + MLT1B LTR MaLR 2 106 -284 995 9 0 0 chr11 2301864 2301995 -148481558 + L1PA5 LINE L1 6028 6158 0 1523 150 24 53 chr11 2301995 2302231 -148481322 + MLT1B LTR MaLR 106 332 -58 2334 94 7 0 chr11 2303624 2303932 -148479621 + AluSg SINE Alu 1 310 0 1694 163 34 3 chr11 2304621 2304915 -148478638 + AluJo SINE Alu 1 303 -9 913 223 35 1 chr11 2307509 2307847 -148475706 + MLT1B LTR MaLR 2 379 -11 244 276 134 39 chr11 2308106 2308233 -148475320 - MIR SINE MIR -103 159 21 229 301 11 21 chr11 2311171 2311264 -148472289 + G-rich Low_complexity Low_complexity 2 93 0 287 268 143 0 chr11 2312039 2312151 -148471402 - L3 LINE CR1 -108 1469 1342 245 316 22 22 chr11 2313960 2314099 -148469454 + L1MC5 LINE L1 5723 5861 -1947 771 111 0 0 chr11 2314119 2314227 -148469326 + AluSg/x SINE Alu 203 310 0 1177 272 68 53 chr11 2314250 2314923 -148468630 + L1MC5 LINE L1 6694 7376 -585 2222 113 7 0 chr11 2315221 2315531 -148468022 + AluSx SINE Alu 1 312 0 287 252 10 29 chr11 2315543 2315646 -148467907 + L1MC5 LINE L1 7701 7801 -160 296 206 17 39 chr11 2315797 2315977 -148467576 + GA-rich Low_complexity Low_complexity 3 178 0 900 205 65 0 chr11 2316719 2316934 -148466619 + L1MC2 LINE L1 6106 6334 -10 415 360 79 9 chr11 2316935 2317163 -148466390 + L1MCa LINE L1 1402 1645 -4781 1468 51 6 0 chr11 2317169 2317345 -148466208 + AluSp SINE Alu 1 177 -136 568 40 0 0 chr11 2317345 2317420 -148466133 + AluSp SINE Alu 228 302 -11 283 191 103 0 chr11 2317747 2317815 -148465738 + MIR SINE MIR 67 141 -121 2386 99 0 0 chr11 2318345 2318657 -148464896 - AluSx SINE Alu 0 312 1 320 308 50 33 chr11 2320004 2320124 -148463429 + MIR3 SINE MIR 58 179 -29 484 276 62 50 chr11 2322659 2323017 -148460536 + MER90 LTR ERV1 227 588 -26 198 0 0 0 chr11 2323464 2323486 -148460067 + (CAGC)n Simple_repeat Simple_repeat 3 24 0 2243 98 3 0 chr11 2325176 2325472 -148458081 - AluSp SINE Alu -16 297 1 1824 115 51 10 chr11 2325482 2325778 -148457775 - AluSx SINE Alu -2 310 3 269 133 0 0 chr11 2326896 2326941 -148456612 + MIR SINE MIR 113 157 -105 496 134 41 21 chr11 2326967 2327064 -148456489 + MER4A LTR ERV1 1 99 -565 1628 125 36 20 chr11 2327064 2327401 -148456152 + MER4A LTR ERV1 262 662 -2 3508 132 173 140 chr11 2327408 2328798 -148454755 + MER4A-int LTR ERV1 1 1435 -5163 1629 163 61 3 chr11 2328926 2329220 -148454333 - AluSx SINE Alu 0 312 2 2098 94 14 0 chr11 2329228 2329514 -148454039 - AluSp SINE Alu -23 290 1 764 185 31 25 chr11 2329537 2329699 -148453854 - FRAM SINE Alu -14 162 1 687 234 234 0 chr11 2329702 2329724 -148453829 + MER82 DNA MER2_type 352 368 -285 228 35 0 0 chr11 2329724 2329753 -148453800 + (CA)n Simple_repeat Simple_repeat 1 29 0 687 234 234 0 chr11 2329753 2329974 -148453579 + MER82 DNA MER2_type 368 652 -1 231 333 0 0 chr11 2329984 2330095 -148453458 + L1MCa LINE L1 2716 2826 -3600 1681 68 0 0 chr11 2330847 2331052 -148452501 + AluSq SINE Alu 1 205 -108 1055 169 34 0 chr11 2331052 2331229 -148452324 + AluSg/x SINE Alu 127 309 -1 186 43 0 0 chr11 2331266 2331289 -148452264 + (A)n Simple_repeat Simple_repeat 1 23 0 3947 183 20 40 chr11 2331291 2331438 -148452115 + L1P LINE L1 4398 4546 -1600 2158 103 0 0 chr11 2331438 2331745 -148451808 - AluSp SINE Alu 0 307 1 3947 183 20 40 chr11 2331745 2331821 -148451732 + L1P LINE L1 4546 4622 -1524 1803 167 10 13 chr11 2331821 2332133 -148451420 + AluJb SINE Alu 1 311 -1 3947 183 20 40 chr11 2332133 2332852 -148450701 + L1P LINE L1 4622 5323 -823 2097 121 3 0 chr11 2332852 2333141 -148450412 + AluSc SINE Alu 1 290 -19 3947 183 20 40 chr11 2333141 2333220 -148450333 + L1P LINE L1 5323 5402 -744 1147 132 44 4 chr11 2333220 2333448 -148450105 + THE1A LTR MaLR 1 237 -118 692 56 0 0 chr11 2333448 2333538 -148450015 + AluSp/q SINE Alu 215 304 -9 953 70 0 0 chr11 2333538 2333666 -148449887 + THE1A LTR MaLR 228 355 0 4817 83 39 0 chr11 2333667 2334387 -148449166 + THE1A-int LTR MaLR 3 750 -830 1342 126 13 4 chr11 2334387 2334617 -148448936 - THE1A LTR MaLR -123 232 1 3184 78 2 0 chr11 2334617 2335064 -148448489 - THE1A-int LTR MaLR 0 1580 1133 193 279 54 78 chr11 2337010 2337139 -148446414 + L2 LINE L2 3123 3248 -24 399 254 78 14 chr11 2338233 2338375 -148445178 + MLT1D LTR MaLR 1 151 -354 188 294 71 12 chr11 2338938 2339023 -148444530 + L2 LINE L2 3100 3189 -83 593 325 41 26 chr11 2339532 2339873 -148443680 - L1MB7 LINE L1 -195 5989 5644 386 174 45 39 chr11 2339994 2340149 -148443404 + (CCCTG)n Simple_repeat Simple_repeat 5 160 0 214 257 29 57 chr11 2340539 2340609 -148442944 + MIR SINE MIR 82 149 -59 216 228 52 57 chr11 2340806 2340910 -148442643 + MIR SINE MIR 25 102 -106 2181 102 0 19 chr11 2340910 2341225 -148442328 + AluSx SINE Alu 1 309 -3 216 228 52 57 chr11 2341225 2341248 -148442305 + MIR SINE MIR 102 124 -84 265 302 125 0 chr11 2342876 2342972 -148440581 - L3 LINE CR1 -489 1088 981 1045 181 0 11 chr11 2344036 2344218 -148439335 - AluJo SINE Alu -132 180 1 2145 122 0 0 chr11 2344252 2344547 -148439006 + AluSx SINE Alu 1 295 -17 1877 113 11 11 chr11 2344548 2344822 -148438731 + AluY SINE Alu 2 275 -36 915 100 0 0 chr11 2344822 2344952 -148438601 + AluY SINE Alu 173 302 -9 2396 146 15 34 chr11 2345129 2345159 -148438394 - MER57A LTR ERV1 0 403 374 186 71 0 0 chr11 2345159 2345187 -148438366 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1941 110 7 11 chr11 2345191 2345472 -148438081 - AluSq SINE Alu -33 280 1 2396 146 15 34 chr11 2345472 2345847 -148437706 - MER57A LTR ERV1 -32 371 1 2238 99 3 6 chr11 2346641 2346955 -148436598 + AluSp SINE Alu 1 313 0 2088 97 3 14 chr11 2347136 2347424 -148436129 + AluSp SINE Alu 1 285 -28 228 67 0 0 chr11 2347424 2347454 -148436099 + (TA)n Simple_repeat Simple_repeat 2 31 0 2098 115 3 13 chr11 2347529 2347834 -148435719 - AluSq SINE Alu -11 302 1 507 65 0 13 chr11 2347834 2347911 -148435642 - MER4E LTR ERV1 -676 90 15 302 225 0 0 chr11 2348873 2348944 -148434609 - MER81 DNA DNA -6 108 38 332 253 75 71 chr11 2348967 2349242 -148434311 - MLT1C LTR MaLR -12 378 110 1814 147 0 14 chr11 2349257 2349419 -148434134 - AluJb SINE Alu -19 293 135 2305 108 0 0 chr11 2349419 2349724 -148433829 - AluSq SINE Alu -8 305 1 1814 147 0 14 chr11 2349724 2349854 -148433699 - AluJb SINE Alu -177 135 5 2122 121 0 10 chr11 2350005 2350311 -148433242 + AluSq SINE Alu 1 303 -10 2344 68 7 0 chr11 2350834 2351130 -148432423 - AluSc SINE Alu -11 298 1 1288 160 88 40 chr11 2351172 2351422 -148432131 + AluJb SINE Alu 39 300 -12 2147 102 0 7 chr11 2351422 2351742 -148431811 + AluSx SINE Alu 1 312 0 1003 234 151 13 chr11 2351751 2352135 -148431418 - L1MC4 LINE L1 -444 7598 7162 5807 77 48 6 chr11 2352310 2353237 -148430316 + MER4A-int LTR ERV1 1479 2450 -4148 2009 102 4 4 chr11 2353237 2353512 -148430041 + AluSg SINE Alu 19 293 -17 5807 77 48 6 chr11 2353512 2353560 -148429993 + MER4A-int LTR ERV1 2450 2495 -4103 1212 152 84 0 chr11 2353560 2353797 -148429756 - LTR8 LTR ERV1 -434 257 1 3317 130 83 53 chr11 2353800 2354437 -148429116 + MER4A-int LTR ERV1 2741 3416 -3182 2436 61 0 13 chr11 2354437 2354748 -148428805 - AluY SINE Alu -4 307 1 3317 130 83 53 chr11 2354748 2355023 -148428530 + MER4A-int LTR ERV1 3416 3681 -2917 * 15489 93 47 20 chr11 2355021 2356422 -148427131 + MER4A-int LTR ERV1 3836 5198 -1400 2417 88 0 0 chr11 2356422 2356730 -148426823 + AluSx SINE Alu 2 309 -3 15489 93 47 20 chr11 2356730 2358019 -148425534 + MER4A-int LTR ERV1 5198 6598 0 495 131 20 20 chr11 2358020 2358119 -148425434 + MER4A LTR ERV1 1 99 -565 1735 113 6 57 chr11 2358119 2358424 -148425129 + MER4A LTR ERV1 262 606 -58 2217 100 10 0 chr11 2358424 2358723 -148424830 - AluSx SINE Alu -10 302 1 1735 113 6 57 chr11 2358723 2358780 -148424773 + MER4A LTR ERV1 606 664 0 2171 116 0 3 chr11 2358865 2359166 -148424387 - AluSq SINE Alu -13 300 1 505 309 17 6 chr11 2359739 2359920 -148423633 + MER53 DNA DNA 1 183 -6 2263 80 17 3 chr11 2360909 2361208 -148422345 - AluSq SINE Alu -10 303 1 292 204 68 0 chr11 2361208 2361296 -148422257 + MER69 DNA AcHobo 2361 2454 -72 541 228 62 11 chr11 2361565 2361799 -148421754 + MLT1C LTR MaLR 72 373 -17 1181 265 73 0 chr11 2363113 2363426 -148420127 + MER58B DNA MER1_type 3 338 -3 318 297 58 36 chr11 2363597 2363735 -148419818 - MIR SINE MIR -33 229 89 655 236 56 15 chr11 2363911 2364106 -148419447 - MIR SINE MIR -45 217 15 205 239 65 76 chr11 2364299 2364391 -148419162 + L2 LINE L2 2883 2973 -299 414 57 0 0 chr11 2364643 2364696 -148418857 + (TGGA)n Simple_repeat Simple_repeat 4 56 0 1038 217 17 0 chr11 2365105 2365370 -148418183 + L1M4 LINE L1 5202 5470 -704 1291 86 0 56 chr11 2365370 2365395 -148418158 + AluY SINE Alu 118 143 -168 2383 41 3 7 chr11 2365395 2365690 -148417863 + AluY SINE Alu 17 310 -1 1291 86 0 56 chr11 2365690 2365861 -148417692 + AluY SINE Alu 143 303 -8 1081 179 20 99 chr11 2365865 2366167 -148417386 + L1M4 LINE L1 5479 5756 -418 445 281 126 7 chr11 2368449 2368584 -148414969 - MIR SINE MIR -100 162 12 190 262 0 0 chr11 2369997 2370039 -148413514 - MIR SINE MIR -63 145 104 236 225 30 175 chr11 2370478 2370644 -148412909 - MIR SINE MIR -65 143 3 830 145 6 23 chr11 2371162 2371472 -148412081 + (TCCA)n Simple_repeat Simple_repeat 1 305 0 235 314 82 57 chr11 2373185 2373344 -148410209 + MIR SINE MIR 77 239 -23 229 182 73 0 chr11 2374215 2374270 -148409283 - L2 LINE L2 -186 3086 3028 212 293 121 32 chr11 2374372 2374529 -148409024 - L2 LINE L2 -168 3104 2934 535 340 30 8 chr11 2376203 2376435 -148407118 + MIR SINE MIR 1 234 -28 481 281 65 0 chr11 2379017 2379170 -148404383 - MLT1C LTR MaLR 0 467 305 383 365 19 6 chr11 2379872 2380028 -148403525 - MIR SINE MIR -10 252 95 184 315 9 93 chr11 2381580 2381688 -148401865 + MER5B DNA MER1_type 13 111 -67 205 280 32 11 chr11 2382394 2382487 -148401066 - L2 LINE L2 -182 3090 2996 2452 152 67 0 chr11 2382788 2383189 -148400364 - MSTA LTR MaLR 0 428 1 2218 75 0 7 chr11 2383448 2383741 -148399812 - AluY SINE Alu -20 291 1 1191 216 36 88 chr11 2384186 2384571 -148398982 + MLT1A1 LTR MaLR 1 365 0 188 274 78 0 chr11 2384595 2384646 -148398907 - L3 LINE CR1 -12 1565 1511 251 182 55 0 chr11 2384722 2384777 -148398776 - MER117 DNA MER1_type -82 115 58 404 382 66 5 chr11 2384818 2385030 -148398523 - L3 LINE CR1 -374 1203 979 226 331 60 8 chr11 2385285 2385407 -148398146 + MIR SINE MIR 18 150 -69 1618 145 3 74 chr11 2385869 2386193 -148397360 + AluJb SINE Alu 6 306 -6 2312 65 14 0 chr11 2386524 2386815 -148396738 - AluSx SINE Alu -17 295 1 3066 230 17 25 chr11 2386986 2387926 -148395627 - L1M3 LINE L1 -704 5479 4547 3397 141 16 18 chr11 2388010 2388640 -148394913 + L1PA16 LINE L1 5460 6088 -78 401 213 0 0 chr11 2388905 2388985 -148394568 + L1PA16 LINE L1 6079 6158 -8 1013 67 6 16 chr11 2389015 2389233 -148394320 + L1HS LINE L1 5992 6180 0 282 209 58 23 chr11 2389300 2389386 -148394167 - MLT1I LTR MaLR -40 369 281 1072 266 18 35 chr11 2389549 2389818 -148393735 + MLT1A2 LTR MaLR 1 264 -110 2303 109 124 16 chr11 2389818 2390204 -148393349 + MSTA LTR MaLR 1 428 0 1072 266 18 35 chr11 2390204 2390272 -148393281 + MLT1A2 LTR MaLR 264 332 -42 1206 152 0 15 chr11 2390314 2390512 -148393041 - AluJo SINE Alu -37 275 81 2155 128 0 0 chr11 2390565 2390862 -148392691 - AluSx SINE Alu -15 297 1 482 292 87 5 chr11 2390889 2391074 -148392479 - MER3 DNA MER1_type 0 209 10 1337 184 78 73 chr11 2391579 2391782 -148391771 + MSTB1 LTR MaLR 6 207 -225 1450 166 7 50 chr11 2391782 2392084 -148391469 + AluJo SINE Alu 24 312 0 1337 184 78 73 chr11 2392084 2392305 -148391248 + MSTB1 LTR MaLR 207 432 0 1515 209 29 24 chr11 2393212 2393590 -148389963 + Ricksha_c DNA DNA 70 449 -1597 4685 155 34 19 chr11 2393767 2394662 -148388891 + Ricksha_c DNA DNA 454 1361 -685 2567 62 6 3 chr11 2394665 2395019 -148388534 + THE1A LTR MaLR 1 355 0 2928 161 34 58 chr11 2395019 2395383 -148388170 + Ricksha_c DNA DNA 1361 1732 -1522 1926 149 0 10 chr11 2395383 2395679 -148387874 - AluSx SINE Alu -19 293 1 2928 161 34 58 chr11 2395679 2395863 -148387690 + Ricksha_c DNA DNA 1732 1891 -1363 1854 132 39 0 chr11 2395863 2396144 -148387409 + AluSx SINE Alu 1 292 -20 2928 161 34 58 chr11 2396144 2396297 -148387256 + Ricksha_c DNA DNA 1891 2046 0 4572 222 127 20 chr11 2396299 2397424 -148386129 - L1ME1 LINE L1 -21 6145 5142 219 69 0 0 chr11 2397424 2397453 -148386100 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 4572 222 127 20 chr11 2397453 2398547 -148385006 - L1ME1 LINE L1 -1024 5142 3694 237 270 283 4 chr11 2398682 2398854 -148384699 - MIR SINE MIR -21 187 16 713 309 104 24 chr11 2399045 2399594 -148383959 + L2 LINE L2 2714 3299 -14 187 225 25 0 chr11 2399924 2399964 -148383589 + L2 LINE L2 3211 3251 -21 418 264 71 14 chr11 2400092 2400232 -148383321 + MIR SINE MIR 96 243 -19 233 255 10 0 chr11 2400265 2400363 -148383190 + (ATGGTG)n Simple_repeat Simple_repeat 6 104 0 * 865 162 6 6 chr11 2400348 2400527 -148383026 + (ATG)n Simple_repeat Simple_repeat 1 179 0 785 189 0 6 chr11 2400571 2400751 -148382802 + (ATG)n Simple_repeat Simple_repeat 1 179 0 519 189 13 26 chr11 2400764 2400917 -148382636 + (ATGGTG)n Simple_repeat Simple_repeat 2 152 0 1904 193 52 25 chr11 2401057 2401535 -148382018 - Charlie1b DNA MER1_type -4 519 29 2468 59 0 0 chr11 2401604 2401907 -148381646 + AluSx SINE Alu 1 303 -9 1589 188 27 60 chr11 2402794 2403240 -148380313 + MLT1C LTR MaLR 37 467 0 180 103 29 59 chr11 2404740 2404808 -148378745 + (CAGAGA)n Simple_repeat Simple_repeat 1 66 0 325 325 65 56 chr11 2405168 2405399 -148378154 + MIR SINE MIR 21 253 -9 240 233 0 111 chr11 2405691 2405755 -148377798 + MIR SINE MIR 117 170 -92 2330 91 0 0 chr11 2405755 2406063 -148377490 + AluSg SINE Alu 1 308 -2 240 233 0 111 chr11 2406063 2406088 -148377465 + MIR SINE MIR 170 196 -66 436 276 17 17 chr11 2406405 2406546 -148377007 + MIR SINE MIR 104 243 -19 678 259 38 28 chr11 2406710 2406922 -148376631 - MER20 DNA MER1_type 0 219 6 282 333 16 40 chr11 2407113 2407239 -148376314 - MIR SINE MIR -51 211 89 228 367 28 0 chr11 2407351 2407460 -148376093 - MIR SINE MIR -102 160 49 25 0 0 0 chr11 2409458 2409483 -148374070 + GC_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr11 2409516 2409550 -148374003 + GC_rich Low_complexity Low_complexity 1 34 0 383 312 75 48 chr11 2412348 2412946 -148370607 + L2 LINE L2 2451 3073 -240 191 274 14 68 chr11 2414805 2414878 -148368675 + MIR3 SINE MIR 99 167 -41 248 217 50 0 chr11 2417793 2417853 -148365700 + MIR SINE MIR 82 144 -118 2229 82 0 0 chr11 2419245 2419568 -148363985 - AluSc SINE Alu 0 323 1 1000 188 0 0 chr11 2419619 2419789 -148363764 - FRAM SINE Alu -10 166 1 299 288 39 10 chr11 2421868 2422045 -148361508 + MIR SINE MIR 6 241 -21 2034 55 76 7 chr11 2422405 2422680 -148360873 + AluY SINE Alu 1 294 -17 755 282 47 28 chr11 2423016 2423271 -148360282 - MIR SINE MIR -1 261 2 369 333 37 0 chr11 2424079 2424241 -148359312 - MER5A DNA MER1_type -13 176 9 2275 72 3 0 chr11 2424315 2424643 -148358910 + AluSx SINE Alu 1 312 0 33 25 0 0 chr11 2425322 2425362 -148358191 + AT_rich Low_complexity Low_complexity 1 40 0 225 321 94 19 chr11 2425477 2425583 -148357970 - MIR SINE MIR -25 237 124 238 276 115 0 chr11 2425735 2425822 -148357731 - L1ME4a LINE L1 -3 6118 6022 198 342 54 36 chr11 2426129 2426240 -148357313 + MIR SINE MIR 71 183 -79 197 387 93 34 chr11 2426831 2427154 -148356399 - L2 LINE L2 0 3272 2931 444 263 15 0 chr11 2428427 2428564 -148354989 - MER67B LTR ERV1 0 661 523 969 184 0 0 chr11 2428564 2428754 -148354799 + FRAM SINE Alu 1 176 0 454 278 131 27 chr11 2428754 2429171 -148354382 - MER67B LTR ERV1 -128 533 34 1059 174 0 0 chr11 2429319 2429480 -148354073 + U1 snRNA snRNA 1 161 -4 554 236 185 10 chr11 2429517 2429712 -148353841 - L1MB5 LINE L1 -18 6156 5928 2532 53 0 0 chr11 2430541 2430842 -148352711 - AluY SINE Alu -10 301 1 2226 68 0 0 chr11 2432275 2432556 -148350997 + AluY SINE Alu 1 281 -30 1910 126 50 0 chr11 2433144 2433421 -148350132 + AluSg SINE Alu 1 291 -19 701 150 0 9 chr11 2435301 2435414 -148348139 + AluY SINE Alu 184 295 -16 389 267 196 10 chr11 2436348 2436553 -148347000 + MIR SINE MIR 23 262 0 2238 159 68 12 chr11 2437456 2437865 -148345688 - Tigger2a DNA MER2_type -1 433 2 454 304 60 51 chr11 2439295 2439512 -148344041 - MIR SINE MIR -31 231 13 373 102 0 0 chr11 2440826 2440885 -148342668 - L1MB2 LINE L1 0 6171 6113 2252 218 32 4 chr11 2440909 2441445 -148342108 - L1MB5 LINE L1 -282 5901 5351 546 339 116 31 chr11 2441445 2441522 -148342031 - L1MC/D LINE L1 -566 5956 5887 972 285 146 43 chr11 2441522 2442030 -148341523 - MER68 LTR ERV1 -2 560 1 546 339 116 31 chr11 2442030 2442055 -148341498 - L1MC/D LINE L1 -635 5887 5866 1826 176 0 7 chr11 2442055 2442356 -148341197 + AluJo SINE Alu 1 299 -13 546 339 116 31 chr11 2442356 2442641 -148340912 - L1MC/D LINE L1 -656 5866 5535 1846 157 71 0 chr11 2442643 2443007 -148340546 + MSTC LTR MaLR 1 390 -38 2099 107 0 20 chr11 2443007 2443306 -148340247 + AluSc SINE Alu 1 293 -16 2283 94 7 0 chr11 2443320 2443629 -148339924 + AluSx SINE Alu 1 311 -1 185 139 23 0 chr11 2443633 2443676 -148339877 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 820 193 0 0 chr11 2443759 2443894 -148339659 + AluJo SINE Alu 1 135 -177 26 0 0 0 chr11 2443894 2443920 -148339633 + AT_rich Low_complexity Low_complexity 1 26 0 1057 300 94 82 chr11 2444004 2444776 -148338777 - L1MC/D LINE L1 -1500 4926 2769 1679 182 74 12 chr11 2444782 2445199 -148338354 - L1MC1 LINE L1 -5 6328 5886 863 221 4 65 chr11 2445238 2445469 -148338084 - MER21B LTR ERV1 -72 791 575 2031 135 7 0 chr11 2445470 2445773 -148337780 + AluSc SINE Alu 1 305 -4 549 44 0 0 chr11 2445773 2445841 -148337712 + (GGGA)n Simple_repeat Simple_repeat 2 69 0 2092 167 28 0 chr11 2445845 2446240 -148337313 - L1MC/D LINE L1 -5930 496 91 12557 81 2 21 chr11 2546270 2548020 -148235533 - L1P3 LINE L1 -4738 1723 8 337 179 60 12 chr11 2548027 2548111 -148235442 - MLT1B LTR MaLR -210 180 93 2503 34 41 0 chr11 2548777 2549071 -148234482 - AluY SINE Alu -5 306 1 40 21 0 0 chr11 2549076 2549123 -148234430 + AT_rich Low_complexity Low_complexity 1 47 0 262 261 14 14 chr11 2549879 2549948 -148233605 - HERVL LTR ERVL -3194 2460 2392 271 287 47 67 chr11 2551338 2551488 -148232065 + MIR SINE MIR 70 216 -46 1429 183 57 89 chr11 2551996 2552197 -148231356 + MER57A LTR ERV1 13 196 -207 2095 129 10 0 chr11 2552197 2552492 -148231061 + AluSx SINE Alu 1 298 -14 1429 183 57 89 chr11 2552492 2552694 -148230859 + MER57A LTR ERV1 196 403 0 216 289 36 12 chr11 2552699 2552782 -148230771 - MIR SINE MIR -130 132 48 2178 116 34 0 chr11 2552838 2553131 -148230422 - AluSx SINE Alu -9 303 1 247 310 177 0 chr11 2555241 2555354 -148228199 - MIR SINE MIR -51 211 79 1087 170 28 161 chr11 2555977 2556407 -148227146 + MER93b LTR ERV1 1 373 0 4659 86 7 18 chr11 2556449 2557002 -148226551 - L1PA11 LINE L1 -128 6046 5500 2105 91 62 0 chr11 2557002 2557278 -148226275 - AluSg SINE Alu -17 293 1 4659 86 7 18 chr11 2557278 2557398 -148226155 - L1PA11 LINE L1 -674 5500 5380 404 240 39 0 chr11 2557484 2557588 -148225965 + MER5A DNA MER1_type 76 183 -6 726 185 20 20 chr11 2558592 2558794 -148224759 + L1MA8 LINE L1 5971 6181 -124 196 303 28 46 chr11 2559057 2559166 -148224387 + MIR SINE MIR 35 141 -67 377 289 16 31 chr11 2559234 2559362 -148224191 - L2 LINE L2 -10 3262 3137 189 0 0 0 chr11 2559579 2559600 -148223953 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 327 350 64 6 chr11 2559600 2559757 -148223796 + MIR SINE MIR 49 214 -48 3529 105 8 12 chr11 2560328 2560843 -148222710 + LTR10D LTR ERV1 1 513 0 2134 138 3 0 chr11 2561726 2562031 -148221522 + AluSx SINE Alu 1 306 -6 298 289 26 46 chr11 2562538 2562690 -148220863 - MLT2F LTR ERVL -5 658 510 1150 256 140 43 chr11 2562708 2563162 -148220391 + MLT1E LTR MaLR 23 530 -63 2240 115 0 0 chr11 2563162 2563457 -148220096 - AluSx SINE Alu -17 295 1 1150 256 140 43 chr11 2563457 2563494 -148220059 + MLT1E LTR MaLR 530 562 -31 2441 84 0 3 chr11 2563544 2563854 -148219699 - AluY SINE Alu -2 309 1 2899 157 10 29 chr11 2564159 2564682 -148218871 - L1MA8 LINE L1 -159 6132 5620 2315 108 129 5 chr11 2564880 2565259 -148218294 - MSTA LTR MaLR -2 426 1 206 372 0 13 chr11 2565553 2565631 -148217922 + MIR3 SINE MIR 89 165 -43 441 139 13 0 chr11 2565770 2565849 -148217704 - MADE1 DNA Mariner 0 80 1 235 263 92 20 chr11 2567761 2567913 -148215640 - L1ME3 LINE L1 -91 6071 5909 1532 196 0 27 chr11 2569431 2569732 -148213821 + AluJb SINE Alu 1 293 -19 186 330 89 22 chr11 2571564 2571743 -148211810 - MIR SINE MIR -44 218 28 1412 154 32 0 chr11 2573500 2573721 -148209832 + MER30 DNA MER1_type 1 228 -2 572 276 118 26 chr11 2574210 2574514 -148209039 + L1ME2 LINE L1 5811 6142 -22 213 209 0 0 chr11 2574635 2574678 -148208875 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 499 269 100 45 chr11 2575023 2575385 -148208168 + L1ME1 LINE L1 5745 6125 -41 23 33 0 0 chr11 2575583 2575613 -148207940 + AT_rich Low_complexity Low_complexity 1 30 0 1606 165 15 4 chr11 2577275 2577548 -148206005 - AluJo SINE Alu -22 290 15 240 207 35 0 chr11 2577724 2577782 -148205771 + G-rich Low_complexity Low_complexity 5 64 0 231 114 0 0 chr11 2577791 2577826 -148205727 + (GGGGA)n Simple_repeat Simple_repeat 1 35 0 566 211 26 0 chr11 2578189 2578303 -148205250 + AluJo SINE Alu 90 206 -106 3421 203 85 34 chr11 2578327 2580068 -148203485 + L1MA8 LINE L1 4474 6291 0 1894 138 0 4 chr11 2580199 2580467 -148203086 - AluSx SINE Alu -45 267 1 2286 98 0 7 chr11 2580913 2581210 -148202343 - AluSx SINE Alu -13 299 5 28 0 0 0 chr11 2582210 2582238 -148201315 + AT_rich Low_complexity Low_complexity 1 28 0 1771 187 3 16 chr11 2582648 2582963 -148200590 - AluJo SINE Alu -1 311 1 3536 71 0 0 chr11 2583472 2583910 -148199643 - LTR21B LTR ERV1 0 438 1 1806 243 19 63 chr11 2583910 2584532 -148199021 - HERVFH21 LTR ERV1 0 6529 5935 20686 137 30 21 chr11 2584533 2588645 -148194908 - HERVFH21 LTR ERV1 -1791 4738 539 1794 200 60 25 chr11 2588639 2589184 -148194369 - HERVFH21 LTR ERV1 -5951 578 1 * 3478 58 11 0 chr11 2589185 2589618 -148193935 - LTR21B LTR ERV1 0 438 1 226 310 58 7 chr11 2592631 2592786 -148190767 + L1M4c LINE L1 1951 2113 -4917 764 261 67 71 chr11 2592821 2593072 -148190481 + L1M4c LINE L1 2013 2264 -4842 1790 181 0 10 chr11 2593072 2593364 -148190189 + AluJb SINE Alu 1 289 -23 764 261 67 71 chr11 2593364 2594834 -148188719 + L1M4c LINE L1 2264 3837 -3269 987 275 22 16 chr11 2594845 2595165 -148188388 + L1 LINE L1 4519 4840 -1306 237 363 6 0 chr11 2595198 2595355 -148188198 + L1M3 LINE L1 1684 1841 -5009 * 400 248 14 35 chr11 2595334 2595475 -148188078 + L1M3 LINE L1 2464 2601 -4248 567 208 32 8 chr11 2595482 2595607 -148187946 + FLAM_C SINE Alu 6 133 -10 897 265 123 33 chr11 2595801 2596793 -148186760 + L1M3 LINE L1 2493 3569 -3279 1847 230 111 36 chr11 2596838 2597273 -148186280 + L1M3 LINE L1 5246 5647 -1226 2594 51 0 22 chr11 2597273 2597588 -148185965 + AluY SINE Alu 1 308 -3 1847 230 111 36 chr11 2597588 2598094 -148185459 + L1M3 LINE L1 5647 6311 -562 1753 170 0 0 chr11 2598094 2598377 -148185176 + AluJb SINE Alu 15 297 -15 1847 230 111 36 chr11 2598377 2598604 -148184949 + L1M3 LINE L1 6311 6520 -353 2188 91 7 21 chr11 2599088 2599398 -148184155 + AluSp SINE Alu 2 307 0 269 271 21 21 chr11 2599520 2599616 -148183937 + L1MA9 LINE L1 3 98 -5857 485 275 8 0 chr11 2599626 2599746 -148183807 + FLAM_C SINE Alu 4 124 -19 259 297 0 0 chr11 2599746 2599810 -148183743 + L1MA9 LINE L1 92 155 -5800 * 1735 264 44 15 chr11 2599807 2600395 -148183158 + L1MA9 LINE L1 4463 5067 -967 310 240 53 0 chr11 2600458 2600533 -148183020 + MADE1 DNA Mariner 1 79 -1 2829 228 44 22 chr11 2600534 2601310 -148182243 + L1MA9 LINE L1 5378 6170 -30 434 165 1 3 chr11 2601360 2601466 -148182087 + L1MA4 LINE L1 5745 5849 -314 226 143 54 0 chr11 2601498 2601554 -148181999 - L1MCa LINE L1 -4362 2064 2006 254 364 0 0 chr11 2603366 2603465 -148180088 - MER5A DNA MER1_type -80 109 11 500 254 113 24 chr11 2603621 2603834 -148179719 + L1MC4 LINE L1 7278 7509 -533 1995 138 0 7 chr11 2604041 2604338 -148179215 - AluSx SINE Alu -16 296 2 246 300 100 27 chr11 2605317 2605467 -148178086 + MER5B DNA MER1_type 17 177 -1 1162 78 203 5 chr11 2607568 2607760 -148175793 + MER30 DNA MER1_type 1 230 0 2446 59 0 0 chr11 2609333 2609620 -148173933 + AluSx SINE Alu 1 287 -25 1179 280 19 24 chr11 2609624 2609996 -148173557 + MER93a LTR ERV1 7 376 -26 28 0 0 0 chr11 2610182 2610210 -148173343 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 2610734 2610758 -148172795 + AT_rich Low_complexity Low_complexity 1 24 0 819 263 103 0 chr11 2610882 2611163 -148172390 - MER33 DNA MER1_type -14 310 1 1368 234 119 66 chr11 2611708 2612070 -148171483 - MLT1H LTR MaLR 0 549 151 2695 98 0 3 chr11 2612070 2612426 -148171127 + THE1A LTR MaLR 1 355 0 1368 234 119 66 chr11 2612426 2612577 -148170976 - MLT1H LTR MaLR -398 151 9 299 284 66 47 chr11 2612577 2612729 -148170824 - MIR SINE MIR -54 154 4 468 269 46 29 chr11 2613262 2613437 -148170116 + MER5B DNA MER1_type 1 178 0 642 125 9 9 chr11 2613439 2613551 -148170002 - L1PA13 LINE L1 0 6163 6052 235 306 14 0 chr11 2613551 2613623 -148169930 + L2 LINE L2 3232 3304 -9 595 309 15 15 chr11 2614427 2614631 -148168922 - MIR SINE MIR -37 225 22 260 222 19 0 chr11 2614627 2614681 -148168872 - L2 LINE L2 0 3272 3218 * 327 322 14 61 chr11 2614854 2614910 -148168643 - MIR SINE MIR -49 213 156 2391 63 0 10 chr11 2614910 2615213 -148168340 + AluY SINE Alu 1 300 -11 327 322 14 61 chr11 2615213 2615370 -148168183 - MIR SINE MIR -106 156 10 280 285 71 32 chr11 2616425 2616706 -148166847 - HAL1 LINE L1 -1124 1383 1092 1125 186 11 76 chr11 2616732 2617007 -148166546 - L1MC1 LINE L1 0 6333 6077 302 280 119 0 chr11 2617310 2617453 -148166100 + L1P LINE L1 3725 3884 -2262 873 192 41 0 chr11 2617922 2618094 -148165459 - MSTD LTR MaLR 0 396 218 882 256 231 23 chr11 2618182 2618459 -148165094 + SATR1 Satellite Satellite 1 219 -2272 2411 54 0 0 chr11 2618459 2618756 -148164797 + AluY SINE Alu 1 297 -14 882 256 231 23 chr11 2618756 2620243 -148163310 + SATR1 Satellite Satellite 219 2489 -2 1034 227 192 48 chr11 2620267 2622051 -148161502 + SATR1 Satellite Satellite 1 2041 -404 1968 128 0 3 chr11 2623755 2624059 -148159494 + AluY SINE Alu 1 303 -8 213 250 81 81 chr11 2624117 2624253 -148159300 - L2 LINE L2 0 3272 3137 2012 128 0 6 chr11 2624619 2624931 -148158622 - AluSg SINE Alu 0 310 1 228 395 45 14 chr11 2625323 2625543 -148158010 + MIR SINE MIR 32 258 -4 3407 209 17 63 chr11 2625863 2626879 -148156674 - LTR5 LTR ERVK 0 969 1 31 0 0 0 chr11 2627335 2627366 -148156187 + AT_rich Low_complexity Low_complexity 1 31 0 1225 225 15 44 chr11 2627386 2627639 -148155914 - L1MB3 LINE L1 -30 6153 5911 1874 153 0 7 chr11 2627639 2627933 -148155620 - AluSx SINE Alu -18 294 3 1225 225 15 44 chr11 2627933 2628021 -148155532 - L1MB3 LINE L1 -272 5911 5822 272 83 21 0 chr11 2628022 2628070 -148155483 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 7680 91 69 71 chr11 2628101 2629405 -148154148 + SVA Other Other 85 1386 0 732 228 41 15 chr11 2629423 2629643 -148153910 + MLT1C LTR MaLR 238 363 -2 2769 81 100 5 chr11 2630099 2630508 -148153045 + LTR7 LTR ERV1 1 448 -2 246 282 77 0 chr11 2631197 2631275 -148152278 + MLT1J2 LTR MaLR 252 335 -115 2009 133 3 0 chr11 2631655 2631964 -148151589 + AluSx SINE Alu 1 310 -2 1017 196 72 0 chr11 2633272 2633481 -148150072 + MER58A DNA MER1_type 1 224 0 231 353 0 0 chr11 2633678 2633746 -148149807 + L2 LINE L2 3153 3220 -52 1902 123 35 0 chr11 2634576 2634861 -148148692 + AluSx SINE Alu 5 299 -13 1974 128 24 0 chr11 2635242 2635538 -148148015 - AluSx SINE Alu -9 303 1 1779 119 32 11 chr11 2636811 2637096 -148146457 - AluSx SINE Alu -21 291 1 1899 101 4 14 chr11 2637174 2637483 -148146070 - AluSq SINE Alu 0 313 16 625 133 0 0 chr11 2637484 2637599 -148145954 + AluSg/x SINE Alu 199 310 0 431 73 176 0 chr11 2638134 2638202 -148145351 - MADE1 DNA Mariner 0 80 1 825 245 40 0 chr11 2639435 2639635 -148143918 - MER58A DNA MER1_type -16 208 1 2170 96 3 13 chr11 2642103 2642405 -148141148 + AluSx SINE Alu 1 299 -13 378 0 0 0 chr11 2642406 2642448 -148141105 + (CA)n Simple_repeat Simple_repeat 1 42 0 1028 147 58 0 chr11 2642509 2642699 -148140854 - AluJo SINE Alu -6 306 106 1839 124 13 52 chr11 2642737 2643043 -148140510 - AluSx SINE Alu -11 301 8 1184 110 12 0 chr11 2643181 2643354 -148140199 + MER30 DNA MER1_type 1 175 -55 1317 151 5 0 chr11 2643472 2643691 -148139862 - AluJo SINE Alu -92 220 1 275 280 144 8 chr11 2643964 2644096 -148139457 + MIR SINE MIR 81 230 -32 247 254 15 15 chr11 2644254 2644321 -148139232 - MIR SINE MIR -115 147 81 628 314 74 0 chr11 2646088 2646317 -148137236 + L1MD2 LINE L1 5763 6008 -351 1782 128 45 14 chr11 2646374 2646530 -148137023 - AluSg SINE Alu -11 299 128 2198 104 3 0 chr11 2646530 2646829 -148136724 - AluSq SINE Alu -13 300 1 1782 128 45 14 chr11 2646829 2646960 -148136593 - AluSg SINE Alu -182 128 3 301 290 73 67 chr11 2647039 2647180 -148136373 - MIR SINE MIR -68 140 43 709 153 51 8 chr11 2647482 2647600 -148135953 + FLAM_A SINE Alu 4 126 -7 2050 132 3 0 chr11 2648099 2648403 -148135150 + AluSx SINE Alu 1 305 -7 510 275 194 14 chr11 2648415 2648782 -148134771 - LTR33A LTR ERVL -16 507 75 1990 141 0 0 chr11 2649677 2649974 -148133579 - AluSx SINE Alu -15 297 1 841 262 88 31 chr11 2651429 2651914 -148131639 + L2 LINE L2 2777 3312 -1 865 247 64 0 chr11 2651914 2652149 -148131404 - MIR SINE MIR 0 262 13 180 136 45 68 chr11 2652174 2652218 -148131335 + MIR SINE MIR 135 177 -85 413 253 88 50 chr11 2654418 2654600 -148128953 - L2 LINE L2 -3 3310 3122 2235 90 3 7 chr11 2655646 2655956 -148127597 - AluSq SINE Alu -4 309 1 1885 107 32 0 chr11 2656050 2656331 -148127222 - AluSc SINE Alu -19 290 1 1510 178 28 14 chr11 2656988 2657274 -148126279 + AluJo SINE Alu 1 290 -22 1442 192 27 72 chr11 2657294 2657447 -148126106 + MLT1C LTR MaLR 41 199 -268 1959 124 3 7 chr11 2657447 2657745 -148125808 + AluSx SINE Alu 1 297 -15 1442 192 27 72 chr11 2657745 2657992 -148125561 + MLT1C LTR MaLR 199 423 -44 2100 121 3 0 chr11 2658016 2658322 -148125231 - AluSq SINE Alu -6 307 1 1470 170 58 7 chr11 2658328 2658605 -148124948 - AluJo SINE Alu -21 291 1 538 164 95 9 chr11 2658606 2658722 -148124831 - MER45A DNA AcHobo -52 126 1 1454 176 127 0 chr11 2659502 2659769 -148123784 - AluJo SINE Alu -1 301 1 555 251 91 23 chr11 2660880 2661099 -148122454 - MIR SINE MIR 0 262 29 1331 185 46 73 chr11 2661261 2661563 -148121990 - AluJo SINE Alu -18 294 1 2016 126 7 10 chr11 2661761 2662071 -148121482 + AluSx SINE Alu 2 310 -2 2162 107 0 7 chr11 2662692 2663002 -148120551 - AluSx SINE Alu -4 308 1 1670 182 3 43 chr11 2663104 2663292 -148120261 - AluJb SINE Alu -1 311 140 1892 113 65 28 chr11 2663292 2663583 -148119970 - AluSx SINE Alu -10 302 1 1670 182 3 43 chr11 2663583 2663718 -148119835 - AluJb SINE Alu -172 140 1 1941 180 20 87 chr11 2663729 2663799 -148119754 - L1MB7 LINE L1 0 6184 6111 1883 157 3 10 chr11 2663799 2664099 -148119454 + AluJb SINE Alu 1 298 -14 1941 180 20 87 chr11 2664099 2664612 -148118941 - L1MB7 LINE L1 -73 6111 5643 4023 118 99 94 chr11 2664812 2666178 -148117375 - pTR5 LTR ERV1 0 2438 742 2282 158 46 11 chr11 2666178 2666615 -148116938 - MER66B LTR ERV1 -34 452 1 1539 172 0 16 chr11 2666615 2666865 -148116688 - AluJb SINE Alu -66 246 1 313 315 54 15 chr11 2666885 2667015 -148116538 + MIR SINE MIR 96 230 -32 1900 173 0 22 chr11 2667037 2667355 -148116198 - AluJo SINE Alu -1 311 1 183 167 0 0 chr11 2667494 2667536 -148116017 + (TTATA)n Simple_repeat Simple_repeat 1 42 0 2325 103 0 0 chr11 2667536 2667826 -148115727 - AluSx SINE Alu -22 290 1 534 286 14 0 chr11 2668703 2668850 -148114703 - MER104 DNA Tc2 -4 176 28 372 296 16 40 chr11 2668886 2669011 -148114542 + L1MC4 LINE L1 6582 6703 -1339 1501 157 0 67 chr11 2669025 2669136 -148114417 - AluJo SINE Alu -63 249 132 2025 161 0 0 chr11 2669136 2669434 -148114119 - AluSx SINE Alu -14 298 1 1501 157 0 67 chr11 2669434 2669589 -148113964 - AluJo SINE Alu -180 132 1 1153 101 0 0 chr11 2669684 2669832 -148113721 - AluSp/q SINE Alu -5 308 161 358 288 17 45 chr11 2670027 2670204 -148113349 + MLT1K LTR MaLR 98 269 -319 542 133 0 0 chr11 2670396 2670471 -148113082 + Alu SINE Alu 220 294 -17 1517 156 67 25 chr11 2670481 2670763 -148112790 + AluJo SINE Alu 1 294 -18 398 257 176 0 chr11 2670769 2670905 -148112648 + MIR SINE MIR 31 190 -72 914 212 69 0 chr11 2671543 2671760 -148111793 + LTR16A1 LTR ERVL 226 457 0 395 268 68 63 chr11 2671884 2672074 -148111479 + L2 LINE L2 3120 3310 -3 2088 155 0 3 chr11 2672132 2672442 -148111111 - AluSg SINE Alu -1 309 1 255 79 0 0 chr11 2673015 2673053 -148110500 + (CA)n Simple_repeat Simple_repeat 1 38 0 240 161 0 0 chr11 2674250 2674312 -148109241 + GA-rich Low_complexity Low_complexity 1 62 0 787 266 99 9 chr11 2675135 2675368 -148108185 + MIR SINE MIR 3 256 -6 729 181 23 84 chr11 2675517 2675585 -148107968 - MER3 DNA MER1_type 0 209 138 2149 126 3 0 chr11 2675585 2675878 -148107675 + AluSx SINE Alu 1 294 -18 729 181 23 84 chr11 2675878 2676024 -148107529 - MER3 DNA MER1_type -71 138 8 3308 139 50 2 chr11 2676044 2676547 -148107006 - MER1A DNA MER1_type 0 527 1 2302 108 0 0 chr11 2676634 2676931 -148106622 - AluSq SINE Alu -16 297 1 592 246 33 30 chr11 2676948 2677152 -148106401 - MIR SINE MIR -40 222 23 353 284 74 0 chr11 2677515 2677610 -148105943 - L2 LINE L2 -12 3260 3159 487 270 82 19 chr11 2677636 2677795 -148105758 - MIR SINE MIR -15 247 79 2871 221 28 58 chr11 2678113 2678976 -148104577 - LTR5 LTR ERVK 0 969 133 253 282 40 74 chr11 2729054 2729203 -148054350 + MER5A DNA MER1_type 32 175 -3 2115 121 14 7 chr11 2729496 2729786 -148053767 - AluSc SINE Alu -17 292 1 570 286 96 64 chr11 2729867 2730241 -148053312 + L1MC5 LINE L1 7548 7933 -28 1872 167 20 10 chr11 2730243 2730543 -148053010 + AluJb SINE Alu 1 303 -9 241 250 164 3 chr11 2730986 2731100 -148052453 - MIR SINE MIR -47 161 31 2160 148 3 0 chr11 2731454 2731765 -148051788 - AluSx SINE Alu 0 312 1 220 346 9 37 chr11 2731879 2731986 -148051567 - MIR SINE MIR -46 216 113 443 277 92 11 chr11 2732428 2732612 -148050941 - MIR SINE MIR -52 210 12 180 325 0 65 chr11 2732594 2732671 -148050882 + L2 LINE L2 3241 3312 -1 * 504 246 0 0 chr11 2732685 2732930 -148050623 + (TGGA)n Simple_repeat Simple_repeat 1 245 0 621 174 0 0 chr11 2732967 2733099 -148050454 + (TGGA)n Simple_repeat Simple_repeat 1 132 0 327 238 135 40 chr11 2734135 2734261 -148049292 + MIR SINE MIR 10 147 -115 283 301 168 38 chr11 2734265 2734611 -148048942 - L2 LINE L2 -2 3311 2921 2304 105 13 7 chr11 2734954 2735260 -148048293 + AluSq SINE Alu 1 308 -5 190 276 53 40 chr11 2735302 2735378 -148048175 + L3 LINE CR1 230 306 -1271 775 217 6 0 chr11 2735957 2736132 -148047421 + MER53 DNA DNA 14 189 0 316 268 0 52 chr11 2736726 2736823 -148046730 - MIR SINE MIR -70 192 101 283 378 27 5 chr11 2737136 2737321 -148046232 + L1MC/D LINE L1 5611 5799 -2009 2027 84 3 0 chr11 2737506 2737790 -148045763 + L1PA8 LINE L1 5886 6170 -2 1459 123 25 185 chr11 2737904 2738271 -148045282 - AluSg SINE Alu -2 308 1 2315 107 13 0 chr11 2738893 2739192 -148044361 - AluSx SINE Alu -9 303 1 986 192 25 5 chr11 2740094 2740292 -148043261 - MER58A DNA MER1_type -14 210 9 2450 133 52 36 chr11 2740701 2740875 -148042678 + L1MA8 LINE L1 5777 5947 -344 1804 186 6 3 chr11 2740875 2741186 -148042367 + AluJo SINE Alu 1 312 0 2450 133 52 36 chr11 2741186 2741515 -148042038 + L1MA8 LINE L1 5947 6288 -3 25 0 0 0 chr11 2741550 2741575 -148041978 + AT_rich Low_complexity Low_complexity 1 25 0 2197 117 13 13 chr11 2741580 2741887 -148041666 - AluSx SINE Alu -3 309 3 1303 156 54 0 chr11 2742119 2742324 -148041229 + AluSx SINE Alu 1 216 -96 247 365 64 0 chr11 2742352 2742555 -148040998 + L2 LINE L2 2155 2370 -944 2150 131 0 0 chr11 2743670 2743967 -148039586 + AluSx SINE Alu 8 304 -8 371 315 54 22 chr11 2743970 2744154 -148039399 - MIR SINE MIR -32 230 41 642 209 39 96 chr11 2744183 2744413 -148039140 + MER20 DNA MER1_type 1 217 -2 200 184 0 0 chr11 2744845 2744883 -148038670 + C-rich Low_complexity Low_complexity 1 38 0 1452 175 14 37 chr11 2745732 2746029 -148037524 - AluJb SINE Alu -22 290 1 625 290 16 36 chr11 2746112 2746360 -148037193 - MIR SINE MIR -12 250 8 295 280 118 48 chr11 2748478 2748923 -148034630 - L2 LINE L2 -11 3261 2803 242 301 88 0 chr11 2749397 2749510 -148034043 + L2 LINE L2 3178 3300 -13 433 293 16 0 chr11 2749600 2749723 -148033830 - MIR SINE MIR -38 224 100 2734 216 57 7 chr11 2749740 2750342 -148033211 + ERVL LTR ERVL 1518 2149 -3615 215 317 17 0 chr11 2750347 2750407 -148033146 - MIR SINE MIR -187 75 15 2123 108 4 0 chr11 2750658 2750975 -148032578 + AluSc SINE Alu 1 318 0 2501 67 0 26 chr11 2751209 2751521 -148032032 - AluY SINE Alu -7 304 1 210 176 0 0 chr11 2752167 2752218 -148031335 + GA-rich Low_complexity Low_complexity 2 52 0 1420 169 36 16 chr11 2752287 2752536 -148031017 + AluJo SINE Alu 42 295 -17 335 325 169 0 chr11 2752538 2752698 -148030855 - L2 LINE L2 -609 2705 2519 217 262 24 36 chr11 2752707 2752791 -148030762 + MER5A DNA MER1_type 107 189 0 2148 122 7 7 chr11 2753103 2753397 -148030156 + AluSq SINE Alu 1 294 -19 432 284 272 11 chr11 2753458 2754084 -148029469 - L2 LINE L2 -244 3028 2243 4854 129 304 86 chr11 2755374 2756767 -148026786 + pTR5 LTR ERV1 743 2438 0 216 315 112 11 chr11 2756878 2756967 -148026586 + MIR3 SINE MIR 57 154 -54 351 308 26 32 chr11 2757017 2757173 -148026380 + L1M4 LINE L1 2398 2552 -3594 444 204 59 35 chr11 2757182 2757382 -148026171 + MLT1J1 LTR MaLR 2 222 -187 262 277 212 65 chr11 2757378 2757562 -148025991 + MLT1J2 LTR MaLR 238 448 -2 * 345 284 79 22 chr11 2757723 2757952 -148025601 + L1M4 LINE L1 2716 2957 -3189 303 28 0 0 chr11 2757955 2757991 -148025562 + (TA)n Simple_repeat Simple_repeat 2 37 0 404 184 20 10 chr11 2758008 2758106 -148025447 - L1M4 LINE L1 -1425 4721 4623 2248 98 0 52 chr11 2759231 2759558 -148023995 - AluSg SINE Alu 0 310 1 324 350 47 14 chr11 2759952 2760166 -148023387 + MIR SINE MIR 32 252 -10 3324 203 21 78 chr11 2760491 2761518 -148022035 - LTR5 LTR ERVK 0 969 1 24 32 0 0 chr11 2761977 2762008 -148021545 + AT_rich Low_complexity Low_complexity 1 31 0 3019 235 22 39 chr11 2762028 2762280 -148021273 - L1MB3 LINE L1 -30 6153 5898 1998 127 35 0 chr11 2762280 2762563 -148020990 - AluSx SINE Alu -17 295 3 3019 235 22 39 chr11 2762563 2762673 -148020880 - L1MB3 LINE L1 -285 5898 5788 1935 135 3 43 chr11 2762673 2762998 -148020555 - AluSx SINE Alu 0 312 1 3019 235 22 39 chr11 2762998 2763992 -148019561 - L1MB3 LINE L1 -395 5788 4818 2249 97 3 3 chr11 2764037 2764337 -148019216 + AluSp SINE Alu 1 300 -13 1217 230 3 65 chr11 2764421 2764620 -148018933 - L1MA4 LINE L1 -175 6125 5960 1705 170 3 3 chr11 2764620 2764903 -148018650 - AluSx SINE Alu -29 283 1 1217 230 3 65 chr11 2764903 2765086 -148018467 - L1MA4 LINE L1 -340 5960 5767 261 259 105 35 chr11 2765124 2765267 -148018286 + HsTC2 DNA Tc2 1631 1783 -115 2029 134 3 31 chr11 2765272 2765592 -148017961 + AluSp SINE Alu 1 311 -2 357 239 97 9 chr11 2765780 2765893 -148017660 + MER5B DNA MER1_type 50 172 -6 633 235 51 0 chr11 2765998 2766194 -148017359 - MER6B DNA MER2_type 0 210 5 1379 128 27 14 chr11 2768087 2768306 -148015247 + AluSq SINE Alu 1 222 -91 744 231 280 3 chr11 2768310 2768639 -148014914 + SATR1 Satellite Satellite 48 467 -3 1889 182 99 24 chr11 2768669 2769476 -148014077 + SATR1 Satellite Satellite 1 866 -93 2773 106 12 2 chr11 2769505 2769929 -148013624 - Tigger1 DNA MER2_type -1404 1014 587 1360 187 120 4 chr11 2769930 2770197 -148013356 + AluJo SINE Alu 2 299 -3 422 195 46 0 chr11 2770252 2770339 -148013214 + Tigger1 DNA MER2_type 501 591 -1827 429 115 33 0 chr11 2770339 2770400 -148013153 - Alu SINE Alu -16 296 234 593 68 0 0 chr11 2770406 2770479 -148013074 + AluSg/x SINE Alu 178 250 -62 1225 177 9 19 chr11 2770479 2770530 -148013023 + AluJo SINE Alu 85 135 -177 2499 86 0 6 chr11 2770530 2770843 -148012710 + AluY SINE Alu 1 311 0 1225 177 9 19 chr11 2770843 2771006 -148012547 + AluJo SINE Alu 135 297 -15 455 220 0 0 chr11 2771007 2771098 -148012455 - Tigger1 DNA MER2_type -1827 591 501 1183 143 37 0 chr11 2771215 2771404 -148012149 - Tigger1 DNA MER2_type -1944 474 279 1202 177 80 17 chr11 2771431 2771668 -148011885 + AluJo SINE Alu 44 295 -17 1460 153 38 11 chr11 2771668 2771929 -148011624 - Tigger1 DNA MER2_type -2127 291 24 303 284 183 24 chr11 2772129 2772298 -148011255 - MIR3 SINE MIR -10 198 3 398 308 17 17 chr11 2772768 2772888 -148010665 + L2 LINE L2 3192 3311 -2 333 230 14 0 chr11 2772910 2772984 -148010569 + MER94 DNA DNA 1 75 -59 9379 93 0 28 chr11 2773084 2774501 -148009052 + HERVH LTR ERV1 1537 2914 -4799 1476 94 5 15 chr11 2774601 2774804 -148008749 + AluY SINE Alu 104 304 -7 1809 154 20 24 chr11 2774891 2775189 -148008364 - AluJb SINE Alu -15 297 1 2190 141 0 10 chr11 2775193 2775505 -148008048 - AluSx SINE Alu -3 309 1 2459 73 0 3 chr11 2775512 2775812 -148007741 - AluY SINE Alu -12 299 1 457 212 66 15 chr11 2775862 2775999 -148007554 + L1ME2 LINE L1 5429 5572 -592 325 202 90 19 chr11 2776000 2776175 -148007378 + L1ME2 LINE L1 5695 5888 -276 1923 155 10 3 chr11 2776547 2776850 -148006703 + AluSx SINE Alu 6 310 -2 245 302 190 17 chr11 2776871 2776987 -148006566 + L3 LINE CR1 1286 1421 -156 2219 93 10 0 chr11 2777304 2777593 -148005960 - AluSx SINE Alu -20 292 1 22 35 0 0 chr11 2777690 2777719 -148005834 + AT_rich Low_complexity Low_complexity 1 29 0 818 171 158 10 chr11 2777858 2778155 -148005398 + Tigger2a DNA MER2_type 1 443 -1 1847 131 0 22 chr11 2778275 2778550 -148005003 + AluSx SINE Alu 1 269 -43 1644 173 10 45 chr11 2778680 2778993 -148004560 - AluJo SINE Alu -8 304 3 367 308 206 40 chr11 2780405 2780730 -148002823 - L2 LINE L2 -2 3311 2933 3861 156 61 20 chr11 2781096 2781121 -148002432 + L1MB7 LINE L1 5142 5165 -1019 2502 88 0 0 chr11 2781121 2781428 -148002125 + AluSp SINE Alu 1 307 -6 3861 156 61 20 chr11 2781428 2782253 -148001300 + L1MB7 LINE L1 5165 6027 -157 2294 116 3 0 chr11 2782253 2782564 -148000989 - AluSx SINE Alu 0 312 1 3861 156 61 20 chr11 2782564 2782642 -148000911 + L1MB7 LINE L1 6027 6100 -84 1419 108 0 5 chr11 2782796 2782981 -148000572 - AluSx SINE Alu -128 184 1 644 236 100 115 chr11 2782983 2783322 -148000231 - L2 LINE L2 -12 3260 2927 2125 135 3 3 chr11 2784271 2784583 -147998970 - AluSx SINE Alu 0 312 1 806 189 0 0 chr11 2784585 2784717 -147998836 - FLAM_A SINE Alu -1 132 1 249 200 71 12 chr11 2785590 2785675 -147997878 - MIR SINE MIR -79 183 94 211 284 28 46 chr11 2785674 2785783 -147997770 + L2 LINE L2 2311 2417 -897 * 205 298 39 10 chr11 2786026 2786130 -147997423 + L2 LINE L2 2888 2994 -278 269 244 39 13 chr11 2786141 2786219 -147997334 + L2 LINE L2 3229 3308 -5 359 313 52 82 chr11 2786264 2786532 -147997021 + MIR SINE MIR 3 262 0 204 331 113 8 chr11 2787283 2787407 -147996146 - MIR3 SINE MIR -31 177 41 2474 62 3 7 chr11 2788060 2788365 -147995188 - AluY SINE Alu -7 304 1 1929 106 8 0 chr11 2788676 2788930 -147994623 + AluSq SINE Alu 52 307 -6 743 157 17 0 chr11 2788930 2789045 -147994508 - AluJo/FLAM SINE Alu -194 118 2 373 255 46 36 chr11 2789109 2789276 -147994277 + MIR SINE MIR 21 183 -62 228 333 50 17 chr11 2789608 2789728 -147993825 + L2 LINE L2 2930 3053 -219 320 273 13 0 chr11 2792148 2792225 -147991328 - MIR3 SINE MIR -5 203 126 187 270 32 16 chr11 2792534 2792597 -147990956 + MIR SINE MIR 108 171 -91 195 364 26 0 chr11 2793903 2793980 -147989573 + MIR SINE MIR 34 112 -150 1111 136 21 21 chr11 2794068 2794085 -147989468 + AluSg/x SINE Alu 120 136 -176 2301 112 16 0 chr11 2794085 2794390 -147989163 + AluSq SINE Alu 1 310 -3 1111 136 21 21 chr11 2794390 2794563 -147988990 + AluSg/x SINE Alu 135 310 -2 331 193 148 34 chr11 2794564 2794652 -147988901 - L1MC4 LINE L1 -1339 6703 6606 419 141 39 0 chr11 2794653 2794731 -147988822 - L1MB7 LINE L1 -84 6100 6020 724 85 11 0 chr11 2794732 2794826 -147988727 + AluJ/FLAM SINE Alu 2 96 -216 862 122 0 43 chr11 2794965 2795074 -147988479 + AluJo/FLAM SINE Alu 1 104 -198 2360 87 0 0 chr11 2795074 2795362 -147988191 - AluSc SINE Alu -20 289 2 862 122 0 43 chr11 2795362 2795391 -147988162 + AluJo/FLAM SINE Alu 104 133 -169 226 255 0 0 chr11 2795392 2795443 -147988110 - MIR SINE MIR -65 143 93 349 228 206 15 chr11 2795987 2796123 -147987430 + MIR SINE MIR 1 162 -100 1643 88 5 0 chr11 2796125 2796329 -147987224 + AluSx SINE Alu 9 213 -99 2014 138 0 10 chr11 2796611 2796908 -147986645 + AluSx SINE Alu 1 294 -18 27 0 0 0 chr11 2796908 2796935 -147986618 + AT_rich Low_complexity Low_complexity 1 27 0 2093 128 0 20 chr11 2797199 2797504 -147986049 - AluSx SINE Alu -13 299 1 806 193 223 0 chr11 2797624 2797826 -147985727 - Tigger2a DNA MER2_type -1 443 197 594 139 37 19 chr11 2797813 2797921 -147985632 - Tigger2a DNA MER2_type -324 110 1 * 1055 164 6 0 chr11 2798165 2798330 -147985223 + AluSg/x SINE Alu 124 289 -20 1646 176 68 56 chr11 2798369 2798496 -147985057 - Charlie1 DNA MER1_type -349 2412 2288 2065 112 30 3 chr11 2798496 2798791 -147984762 - AluSx SINE Alu -9 303 1 1646 176 68 56 chr11 2798791 2798974 -147984579 - Charlie1 DNA MER1_type -473 2288 2093 1939 137 0 11 chr11 2798974 2799287 -147984266 - AluSx SINE Alu 0 312 14 1646 176 68 56 chr11 2799287 2799419 -147984134 - Charlie1 DNA MER1_type -668 2093 1964 2494 87 0 0 chr11 2799419 2799730 -147983823 - AluY SINE Alu 0 311 1 2249 114 3 0 chr11 2799768 2800065 -147983488 - AluSg SINE Alu -12 298 1 1204 141 5 5 chr11 2800065 2800263 -147983290 - AluYa5 SINE Alu -1 310 113 1229 186 97 14 chr11 2801274 2801553 -147982000 + AluJo SINE Alu 5 306 -6 210 37 0 0 chr11 2801675 2801702 -147981851 + (A)n Simple_repeat Simple_repeat 1 27 0 198 0 0 0 chr11 2802889 2802911 -147980642 + (GAGAA)n Simple_repeat Simple_repeat 3 24 0 227 204 0 0 chr11 2803393 2803437 -147980116 + L2 LINE L2 3270 3313 0 344 98 33 0 chr11 2803515 2803576 -147979977 + (TTTAA)n Simple_repeat Simple_repeat 4 66 0 2372 88 0 7 chr11 2803586 2803892 -147979661 + AluSg SINE Alu 1 304 -6 2291 112 0 6 chr11 2803908 2804222 -147979331 + AluSq SINE Alu 2 313 0 775 216 6 28 chr11 2804227 2804403 -147979150 + MIR SINE MIR 91 262 0 2616 50 0 0 chr11 2804417 2804717 -147978836 + AluY SINE Alu 1 300 -11 2051 109 3 21 chr11 2804721 2805034 -147978519 + AluSx SINE Alu 3 310 0 228 163 0 0 chr11 2805103 2805146 -147978407 + T-rich Low_complexity Low_complexity 1 43 0 284 299 103 8 chr11 2805737 2805854 -147977699 + MIR SINE MIR 18 145 -63 2502 64 3 13 chr11 2805870 2806049 -147977504 - AluY SINE Alu 0 311 135 2378 91 7 0 chr11 2806049 2806347 -147977206 - AluSx SINE Alu -12 300 1 2502 64 3 13 chr11 2806347 2806481 -147977072 - AluY SINE Alu -176 135 1 2144 137 0 0 chr11 2806482 2806782 -147976771 - AluSx SINE Alu -12 300 1 2090 140 0 0 chr11 2806852 2807145 -147976408 - AluSx SINE Alu -19 293 1 184 304 109 0 chr11 2807498 2807590 -147975963 - MIR SINE MIR -90 118 17 2302 112 0 6 chr11 2807741 2808055 -147975498 - AluSx SINE Alu 0 312 1 226 221 233 0 chr11 2808224 2808310 -147975243 - MIR SINE MIR -1 261 156 1240 172 9 9 chr11 2808310 2808531 -147975022 - AluSg/x SINE Alu -7 303 83 680 384 0 0 chr11 2808631 2808782 -147974771 + C-rich Low_complexity Low_complexity 1 151 0 455 237 12 12 chr11 2808821 2808990 -147974563 + C-rich Low_complexity Low_complexity 1 169 0 2403 64 14 0 chr11 2809194 2809490 -147974063 - AluSq SINE Alu -13 300 1 238 238 155 0 chr11 2809490 2809574 -147973979 + MIR SINE MIR 163 259 -3 21 0 0 0 chr11 2810422 2810443 -147973110 + GC_rich Low_complexity Low_complexity 1 21 0 844 247 22 35 chr11 2810823 2811050 -147972503 + MIR SINE MIR 33 256 -6 447 199 69 46 chr11 2811197 2811328 -147972225 - MIR3 SINE MIR -14 194 61 187 259 52 35 chr11 2812014 2812072 -147971481 + MIR SINE MIR 109 167 -95 1538 192 17 10 chr11 2814164 2814456 -147969097 - AluJb SINE Alu -18 294 1 1737 133 4 12 chr11 2814631 2814887 -147968666 - AluSq SINE Alu -59 254 1 2176 85 7 29 chr11 2815201 2815507 -147968046 + AluSx SINE Alu 1 299 -13 2355 93 0 3 chr11 2815516 2815818 -147967735 + AluSx SINE Alu 5 305 -7 206 171 0 105 chr11 2816381 2816457 -147967096 + C-rich Low_complexity Low_complexity 5 72 0 216 171 0 24 chr11 2816619 2816660 -147966893 + (CGG)n Simple_repeat Simple_repeat 3 42 0 251 197 0 145 chr11 2817334 2817410 -147966143 - MIR3 SINE MIR -32 176 112 227 125 0 62 chr11 2818511 2818559 -147964994 + L2 LINE L2 3224 3268 -4 1949 146 3 19 chr11 2818676 2818984 -147964569 - AluJb SINE Alu -9 303 1 1452 224 14 0 chr11 2819230 2819516 -147964037 + AluJb SINE Alu 1 290 -22 2079 119 7 19 chr11 2819521 2819831 -147963722 + AluSx SINE Alu 6 311 -1 675 257 39 6 chr11 2819935 2820114 -147963439 - MER20 DNA MER1_type -1 218 34 2135 109 7 0 chr11 2820150 2820455 -147963098 - AluSq SINE Alu 0 307 1 809 119 9 0 chr11 2820559 2820668 -147962885 + AluSg SINE Alu 1 110 -200 269 262 0 0 chr11 2820817 2820878 -147962675 - L1MC5 LINE L1 -71 7890 7830 1557 196 0 50 chr11 2820973 2821150 -147962403 - AluJb SINE Alu -6 306 151 1768 123 0 0 chr11 2821150 2821385 -147962168 - AluSx SINE Alu -77 235 1 1557 196 0 50 chr11 2821385 2821529 -147962024 - AluJb SINE Alu -161 151 1 2117 100 0 39 chr11 2821611 2821921 -147961632 - AluY SINE Alu 0 311 14 344 266 69 58 chr11 2822001 2822174 -147961379 + MER5B DNA MER1_type 3 177 -1 1095 86 0 14 chr11 2822198 2822337 -147961216 - AluSq/x SINE Alu -176 137 1 2401 77 3 0 chr11 2822525 2822823 -147960730 - AluSp SINE Alu -14 299 1 1487 190 14 7 chr11 2822837 2823132 -147960421 - AluJb SINE Alu -15 297 1 1501 115 115 63 chr11 2823383 2823670 -147959883 + AluSg SINE Alu 1 302 -8 21 0 0 0 chr11 2824421 2824442 -147959111 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr11 2824721 2824746 -147958807 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr11 2824898 2824919 -147958634 + AT_rich Low_complexity Low_complexity 1 21 0 326 302 63 57 chr11 2825788 2825947 -147957606 - MER117 DNA MER1_type 0 197 38 2520 74 0 3 chr11 2826021 2826333 -147957220 - AluY SINE Alu 0 311 1 2444 82 0 0 chr11 2826605 2826908 -147956645 - AluSg SINE Alu -6 304 2 2319 81 0 29 chr11 2827459 2827768 -147955785 + AluY SINE Alu 1 300 -11 2089 136 0 10 chr11 2827829 2828131 -147955422 + AluJb SINE Alu 4 302 -10 2216 114 0 19 chr11 2828688 2829005 -147954548 - AluSq SINE Alu -2 311 1 1999 100 64 0 chr11 2829529 2829810 -147953743 - AluSx SINE Alu -13 299 1 2211 102 0 43 chr11 2829812 2830135 -147953418 - AluSg SINE Alu -1 309 1 1474 184 60 14 chr11 2830851 2831133 -147952420 - AluJb SINE Alu -17 295 1 1020 159 6 0 chr11 2831246 2831416 -147952137 - AluSg/x SINE Alu 0 312 142 1842 152 14 0 chr11 2831425 2831715 -147951838 - AluSg SINE Alu -14 296 3 316 155 175 31 chr11 2831717 2831814 -147951739 - L1ME3A LINE L1 -260 5910 5800 190 0 32 32 chr11 2831989 2832020 -147951533 + (TTTTTA)n Simple_repeat Simple_repeat 1 31 0 428 253 42 93 chr11 2832507 2832819 -147950734 - L2 LINE L2 -91 3222 2927 571 267 179 35 chr11 2832865 2833090 -147950463 - L2 LINE L2 -493 2821 2535 2107 150 7 0 chr11 2833090 2833397 -147950156 + AluSx SINE Alu 1 309 -3 571 267 179 35 chr11 2833397 2833489 -147950064 - L2 LINE L2 -779 2535 2458 258 32 0 0 chr11 2833674 2833705 -147949848 + (CA)n Simple_repeat Simple_repeat 2 32 0 243 0 0 0 chr11 2833739 2833766 -147949787 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1049 174 117 68 chr11 2833779 2833911 -147949642 - AluJb SINE Alu -35 277 153 1842 117 80 4 chr11 2833911 2834185 -147949368 - AluSq SINE Alu -13 300 6 1049 174 117 68 chr11 2834185 2834196 -147949357 - AluJb SINE Alu -159 153 144 2104 119 3 7 chr11 2834196 2834490 -147949063 - AluSg1 SINE Alu -16 293 1 1049 174 117 68 chr11 2834490 2834609 -147948944 - AluJb SINE Alu -168 144 1 816 151 0 0 chr11 2834655 2834774 -147948779 - FRAM SINE Alu -8 168 50 1434 196 3 35 chr11 2834799 2835110 -147948443 - AluJo SINE Alu -11 301 1 222 128 0 0 chr11 2835461 2835500 -147948053 + (T)n Simple_repeat Simple_repeat 1 39 0 2453 77 0 0 chr11 2835815 2836113 -147947440 - AluY SINE Alu -13 298 1 202 320 16 41 chr11 2836113 2836226 -147947327 + MIR3 SINE MIR 22 133 -75 1868 143 37 14 chr11 2836632 2836926 -147946627 + AluSx SINE Alu 1 301 -11 694 214 81 39 chr11 2836949 2836992 -147946561 + L1MB7 LINE L1 3741 3781 -2365 2127 120 7 0 chr11 2836992 2837293 -147946260 + AluSg SINE Alu 1 303 -7 694 214 81 39 chr11 2837293 2837483 -147946070 + L1MB7 LINE L1 3781 3984 -2162 * 3453 175 113 46 chr11 2837476 2837535 -147946018 + L1MB7 LINE L1 4663 4717 -1467 2187 126 3 3 chr11 2837535 2837845 -147945708 - AluSx SINE Alu -2 310 1 3453 175 113 46 chr11 2837845 2837859 -147945694 + L1MB7 LINE L1 4717 4729 -1455 1687 173 10 10 chr11 2837859 2838160 -147945393 - AluJb SINE Alu -11 301 1 3453 175 113 46 chr11 2838160 2838432 -147945121 + L1MB7 LINE L1 4729 4981 -1203 2209 122 0 7 chr11 2838432 2838735 -147944818 - AluSx SINE Alu -11 301 1 3453 175 113 46 chr11 2838735 2838888 -147944665 + L1MB7 LINE L1 4981 5122 -1062 871 216 6 6 chr11 2838888 2839059 -147944494 + FAM SINE Alu 1 171 -4 3453 175 113 46 chr11 2839059 2839375 -147944178 + L1MB7 LINE L1 5122 5415 -769 2210 99 10 3 chr11 2839375 2839669 -147943884 + AluSg SINE Alu 1 296 -14 3453 175 113 46 chr11 2839669 2840275 -147943278 + L1MB7 LINE L1 5415 6184 0 1830 122 70 0 chr11 2840415 2840685 -147942868 + AluSx SINE Alu 1 289 -23 243 301 192 13 chr11 2840963 2841119 -147942434 + MIR SINE MIR 49 232 -30 2251 97 0 39 chr11 2841832 2842140 -147941413 + AluSq SINE Alu 1 296 -17 1777 139 18 14 chr11 2842279 2842456 -147941097 - AluSx SINE Alu 0 313 138 254 0 83 0 chr11 2842456 2842492 -147941061 + T-rich Low_complexity Low_complexity 2 40 0 2171 74 7 11 chr11 2842492 2842776 -147940777 - AluSg SINE Alu -27 283 1 1777 139 18 14 chr11 2842776 2842909 -147940644 - AluSx SINE Alu -174 139 1 1451 200 79 10 chr11 2842922 2843257 -147940296 - L1MB7 LINE L1 -7 6177 5817 200 106 15 61 chr11 2844076 2844142 -147939411 + (TTTTTG)n Simple_repeat Simple_repeat 1 63 0 394 148 0 0 chr11 2844164 2844218 -147939335 - Alu SINE Alu -248 54 1 832 220 36 0 chr11 2844246 2844414 -147939139 + FAM SINE Alu 1 174 -1 236 128 0 0 chr11 2844515 2844554 -147938999 - L1ME4a LINE L1 -23 6098 6060 2005 115 14 21 chr11 2844630 2844939 -147938614 - AluSx SINE Alu 0 307 1 287 61 41 0 chr11 2845431 2845480 -147938073 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 1931 113 0 0 chr11 2845491 2845747 -147937806 - AluSq SINE Alu -53 260 5 2304 92 0 13 chr11 2845903 2846218 -147937335 - AluY SINE Alu 0 311 1 718 201 13 13 chr11 2846220 2846369 -147937184 - MER106A DNA MER1_type -55 181 33 2390 100 0 0 chr11 2846436 2846736 -147936817 - AluSq SINE Alu -12 301 2 212 0 36 0 chr11 2846738 2846766 -147936787 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1868 138 22 0 chr11 2846771 2847047 -147936506 - AluJb SINE Alu -30 282 1 1821 105 0 0 chr11 2847983 2848211 -147935342 + AluSx SINE Alu 1 228 -84 2156 113 0 3 chr11 2848731 2849023 -147934530 - AluSg1 SINE Alu -18 291 1 1856 141 3 36 chr11 2849225 2849531 -147934022 - AluSx SINE Alu -14 298 3 2024 154 0 0 chr11 2849742 2850048 -147933505 - AluSx SINE Alu -6 306 1 2092 131 13 0 chr11 2850255 2850561 -147932992 - AluSg SINE Alu 0 310 1 1974 121 3 70 chr11 2850742 2851073 -147932480 - AluSx SINE Alu -3 309 1 315 0 0 0 chr11 2852152 2852187 -147931366 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2012 132 4 0 chr11 2852189 2852470 -147931083 - AluSx SINE Alu -30 282 1 1740 117 120 0 chr11 2852544 2852810 -147930743 - AluSg SINE Alu -2 298 1 1590 199 0 0 chr11 2852838 2853129 -147930424 - AluJo SINE Alu -21 291 1 2277 94 3 0 chr11 2853331 2853629 -147929924 - AluSp SINE Alu -14 299 1 467 263 116 13 chr11 2853664 2853770 -147929783 - MER112 DNA MER1_type -4 256 162 1342 221 13 39 chr11 2853770 2854082 -147929471 + AluJo SINE Alu 1 304 -8 467 263 116 13 chr11 2854082 2854207 -147929346 - MER112 DNA MER1_type -98 162 1 1119 191 109 4 chr11 2854310 2854540 -147929013 + AluJb SINE Alu 1 254 -58 286 287 151 12 chr11 2854610 2854861 -147928692 - L1ME LINE L1 -335 5786 5501 1917 107 21 11 chr11 2855063 2855363 -147928190 - AluSq SINE Alu 0 303 1 2850 19 0 0 chr11 2855369 2855679 -147927874 - AluYb8 SINE Alu -8 310 1 713 104 0 0 chr11 2856047 2856143 -147927410 - AluSq/x SINE Alu -177 136 41 1601 119 171 4 chr11 2856171 2856422 -147927131 - AluSg1 SINE Alu -16 293 1 244 273 64 55 chr11 2857897 2858007 -147925546 - L2 LINE L2 -2 3270 3160 216 289 106 10 chr11 2858032 2858136 -147925417 + MIR SINE MIR 93 206 -56 1919 138 0 0 chr11 2858283 2858558 -147924995 - AluSx SINE Alu -37 275 1 1114 153 35 83 chr11 2858573 2858694 -147924859 - MER33 DNA MER1_type -2275 310 185 2382 95 3 0 chr11 2858694 2859000 -147924553 - AluSg SINE Alu -3 307 1 1114 153 35 83 chr11 2859000 2859191 -147924362 - MER33 DNA MER1_type -2400 185 13 191 247 82 0 chr11 2859255 2859328 -147924225 + L2 LINE L2 3019 3097 -175 738 183 15 8 chr11 2859577 2859708 -147923845 - FLAM_A SINE Alu -1 132 1 2402 105 0 0 chr11 2860156 2860462 -147923091 + AluSc SINE Alu 1 306 -3 238 287 129 0 chr11 2860505 2860606 -147922947 + MIR3 SINE MIR 85 198 -10 207 262 214 0 chr11 2860717 2860820 -147922733 + L2 LINE L2 3134 3258 -14 641 246 0 0 chr11 2861428 2861554 -147921999 + FLAM_A SINE Alu 1 126 -7 209 290 123 22 chr11 2861587 2861623 -147921930 + MIR SINE MIR 106 137 -125 1798 186 3 3 chr11 2861623 2861934 -147921619 + AluJo SINE Alu 1 311 -1 209 290 123 22 chr11 2861934 2862035 -147921518 + MIR SINE MIR 137 257 -5 2101 97 38 3 chr11 2862441 2862729 -147920824 - AluSx SINE Alu -14 298 1 2035 138 7 3 chr11 2862729 2863033 -147920520 - AluSq SINE Alu -8 305 1 2401 100 3 0 chr11 2863185 2863496 -147920057 - AluSx SINE Alu 0 312 1 221 245 0 0 chr11 2863792 2863841 -147919712 + MIR SINE MIR 59 107 -155 324 163 128 0 chr11 2863880 2863966 -147919587 - MIR SINE MIR -54 208 112 2008 126 3 21 chr11 2863968 2864253 -147919300 + AluSx SINE Alu 1 280 -32 188 33 0 33 chr11 2864266 2864296 -147919257 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 546 211 0 24 chr11 2864402 2864525 -147919028 + L2 LINE L2 3192 3311 -2 592 224 195 9 chr11 2864884 2865094 -147918459 - MIR SINE MIR 0 262 14 363 23 0 0 chr11 2865224 2865268 -147918285 + (CA)n Simple_repeat Simple_repeat 2 45 0 267 336 104 8 chr11 2865714 2865839 -147917714 - L2 LINE L2 0 3272 3136 968 179 0 6 chr11 2865856 2866011 -147917542 + FRAM SINE Alu 1 151 -161 244 0 0 0 chr11 2866011 2866038 -147917515 + (TAAA)n Simple_repeat Simple_repeat 2 108 0 677 173 0 0 chr11 2866067 2866171 -147917382 + AluJb SINE Alu 196 299 -13 272 116 23 0 chr11 2866408 2866451 -147917102 + MIR SINE MIR 102 145 -63 1206 157 114 0 chr11 2866454 2866690 -147916863 - Tigger7 DNA MER2_type -1 2486 2224 2301 91 10 0 chr11 2866696 2866992 -147916561 - AluSx SINE Alu -10 302 4 209 250 0 31 chr11 2867066 2867130 -147916423 + MIR SINE MIR 160 221 -41 1909 147 7 3 chr11 2867302 2867588 -147915965 - AluJb SINE Alu -12 300 14 319 312 96 25 chr11 2867701 2867858 -147915695 - MIR3 SINE MIR -14 194 27 2256 101 3 3 chr11 2867878 2868186 -147915367 - AluSx SINE Alu -4 308 1 2578 68 3 0 chr11 2868522 2868829 -147914724 - AluSp SINE Alu -5 308 1 579 204 74 0 chr11 2869065 2869173 -147914380 + FLAM_A SINE Alu 1 116 -17 23 33 0 0 chr11 2869631 2869661 -147913892 + AT_rich Low_complexity Low_complexity 1 30 0 376 273 136 8 chr11 2869692 2869824 -147913729 + MIR SINE MIR 14 162 -100 366 325 49 18 chr11 2869824 2869987 -147913566 - MIR SINE MIR -7 255 88 240 238 81 56 chr11 2870493 2870653 -147912900 - HAL1 LINE L1 -108 2399 2236 2165 123 0 23 chr11 2870736 2871045 -147912508 - AluSg SINE Alu -8 302 1 226 172 23 58 chr11 2871049 2871136 -147912417 + MER113 DNA MER1_type? 3 86 -435 1557 96 0 5 chr11 2871150 2871349 -147912204 - AluY SINE Alu -10 301 104 258 156 0 0 chr11 2871663 2871708 -147911845 + CT-rich Low_complexity Low_complexity 1 45 0 1902 136 0 7 chr11 2871708 2871987 -147911566 - AluSq SINE Alu -36 277 1 336 24 0 0 chr11 2872394 2872435 -147911118 + (CA)n Simple_repeat Simple_repeat 1 41 0 207 69 0 0 chr11 2872541 2872570 -147910983 + (T)n Simple_repeat Simple_repeat 1 29 0 502 187 19 0 chr11 2872875 2872982 -147910571 - FLAM_A SINE Alu -1 141 33 1535 206 18 4 chr11 2873342 2873618 -147909935 + AluJb SINE Alu 1 280 -32 240 35 0 0 chr11 2873620 2873649 -147909904 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2300 102 0 0 chr11 2874225 2874565 -147908988 - AluSq SINE Alu 0 340 1 275 154 0 0 chr11 2874734 2874786 -147908767 + L1M4 LINE L1 3416 3467 -2679 190 130 0 43 chr11 2874789 2874835 -147908718 + (TTTCC)n Simple_repeat Simple_repeat 5 48 0 2245 129 3 0 chr11 2874839 2875149 -147908404 - AluSq SINE Alu -2 311 1 2145 248 147 11 chr11 2875158 2876104 -147907449 + L1M4 LINE L1 3474 4548 -1598 2083 111 10 0 chr11 2876105 2876394 -147907159 + AluSx SINE Alu 1 292 -20 240 312 185 25 chr11 2876670 2876827 -147906726 - L3 LINE CR1 -110 1467 1286 1887 161 10 3 chr11 2876845 2877155 -147906398 - AluSx SINE Alu 0 312 1 180 0 0 0 chr11 2877544 2877564 -147905989 + (T)n Simple_repeat Simple_repeat 1 20 0 2300 98 0 7 chr11 2878002 2878308 -147905245 - AluY SINE Alu -7 304 1 180 0 0 0 chr11 2878310 2878330 -147905223 + (T)n Simple_repeat Simple_repeat 1 20 0 225 239 62 54 chr11 2878949 2879006 -147904547 - L1ME LINE L1 -293 5828 5773 1643 130 115 4 chr11 2879006 2879276 -147904277 - AluSx SINE Alu -12 300 1 225 239 62 54 chr11 2879276 2879348 -147904205 - L1ME LINE L1 -348 5773 5698 1430 182 4 30 chr11 2879420 2879552 -147904001 + AluJb SINE Alu 1 124 -188 207 0 0 0 chr11 2879552 2879575 -147903978 + (CA)n Simple_repeat Simple_repeat 2 24 0 1430 182 4 30 chr11 2879575 2879711 -147903842 + AluJb SINE Alu 124 262 -50 198 103 0 0 chr11 2879789 2879818 -147903735 + (CA)n Simple_repeat Simple_repeat 2 30 0 378 0 0 0 chr11 2879861 2879903 -147903650 + (CA)n Simple_repeat Simple_repeat 2 43 0 365 276 35 55 chr11 2879973 2880172 -147903381 - L1ME LINE L1 -758 5484 5290 32 43 0 0 chr11 2880280 2880326 -147903227 + AT_rich Low_complexity Low_complexity 1 46 0 616 148 157 0 chr11 2880752 2880867 -147902686 - FLAM_C SINE Alu 0 133 1 314 322 49 0 chr11 2880868 2880974 -147902579 - MIR SINE MIR -63 145 34 319 308 149 34 chr11 2881031 2881239 -147902314 + MIR SINE MIR 10 241 -21 2227 101 10 0 chr11 2881320 2881617 -147901936 + AluSq SINE Alu 2 301 -12 205 303 119 28 chr11 2881747 2881856 -147901697 - L2 LINE L2 -30 3283 3165 1530 186 65 48 chr11 2881902 2882044 -147901509 + L1MB7 LINE L1 5746 5884 -300 2111 134 0 0 chr11 2882044 2882342 -147901211 + AluSq SINE Alu 5 302 -11 1530 186 65 48 chr11 2882342 2882613 -147900940 + L1MB7 LINE L1 5884 6166 -18 1115 114 0 6 chr11 2883396 2883554 -147899999 - AluSg/x SINE Alu -22 290 134 1281 138 51 0 chr11 2883689 2883906 -147899647 + MER46A DNA MER2_type 9 236 0 26 64 0 0 chr11 2884303 2884350 -147899203 + AT_rich Low_complexity Low_complexity 1 47 0 2120 127 10 0 chr11 2884367 2884667 -147898886 - AluSx SINE Alu -9 303 1 571 174 9 28 chr11 2884829 2884938 -147898615 - AluJb SINE Alu -11 301 195 2019 124 3 26 chr11 2884988 2885294 -147898259 + AluSx SINE Alu 1 299 -13 2008 127 38 0 chr11 2885401 2885692 -147897861 - AluSx SINE Alu -10 302 1 1603 154 46 39 chr11 2885910 2886216 -147897337 - AluJo SINE Alu -4 308 1 3462 259 59 18 chr11 2886229 2886885 -147896668 + L2 LINE L2 1950 2672 -641 2259 99 0 13 chr11 2886885 2887198 -147896355 - AluY SINE Alu -2 309 1 3462 259 59 18 chr11 2887198 2887609 -147895944 + L2 LINE L2 2672 3065 -248 1676 188 10 0 chr11 2887617 2887909 -147895644 - AluJo SINE Alu -17 295 1 661 195 9 0 chr11 2887952 2888065 -147895488 - FLAM_C SINE Alu -24 119 6 342 296 8 8 chr11 2888109 2888241 -147895312 - L1MC4 LINE L1 -1013 7029 6898 321 207 94 47 chr11 2888345 2888472 -147895081 - FLAM_A SINE Alu -2 131 15 510 280 50 70 chr11 2888472 2888590 -147894963 - L1M4 LINE L1 -2458 3688 3569 1323 177 106 39 chr11 2888590 2888873 -147894680 + AluJo SINE Alu 3 304 -8 510 280 50 70 chr11 2888873 2889329 -147894224 - L1M4 LINE L1 -2577 3569 3125 374 228 44 9 chr11 2889489 2889603 -147893950 - L1M4 LINE L1 -3376 2770 2653 1032 167 36 50 chr11 2889619 2889840 -147893713 + AluJb SINE Alu 82 299 -13 1878 130 41 3 chr11 2890849 2891141 -147892412 - AluSx SINE Alu -9 303 1 2050 132 6 19 chr11 2891190 2891501 -147892052 - AluSq SINE Alu -6 307 1 451 263 93 45 chr11 2891513 2891760 -147891793 - L1ME4a LINE L1 -175 5946 5688 268 79 0 0 chr11 2891764 2891802 -147891751 + MER4E LTR ERV1 654 691 -75 27 0 0 0 chr11 2891885 2891912 -147891641 + AT_rich Low_complexity Low_complexity 1 27 0 383 267 23 46 chr11 2892012 2892143 -147891410 + MIR SINE MIR 134 261 -1 1550 169 59 0 chr11 2892809 2893106 -147890447 - AluJb SINE Alu 0 313 1 21 0 0 0 chr11 2893171 2893192 -147890361 + AT_rich Low_complexity Low_complexity 1 21 0 1576 177 53 14 chr11 2893251 2893534 -147890019 + AluJo SINE Alu 3 296 -16 2300 102 0 0 chr11 2893636 2893976 -147889577 - AluSq SINE Alu 0 340 1 275 154 0 0 chr11 2894145 2894197 -147889356 + L1MB3 LINE L1 3416 3467 -2679 190 130 0 43 chr11 2894200 2894246 -147889307 + (TTTCC)n Simple_repeat Simple_repeat 5 48 0 2245 129 3 0 chr11 2894250 2894560 -147888993 - AluSq SINE Alu -2 311 1 4234 191 86 89 chr11 2894569 2895516 -147888037 + L1MB3 LINE L1 3474 4423 -1760 1901 118 35 14 chr11 2895516 2895803 -147887750 + AluSx SINE Alu 1 293 -19 4234 191 86 89 chr11 2895803 2896101 -147887452 + L1MB3 LINE L1 4423 4720 -1463 1697 183 3 10 chr11 2896101 2896390 -147887163 - AluJb SINE Alu -25 287 1 4234 191 86 89 chr11 2896390 2896911 -147886642 + L1MB3 LINE L1 4720 5241 -942 1279 164 48 106 chr11 2896911 2897223 -147886330 + AluJo SINE Alu 5 298 -14 4234 191 86 89 chr11 2897223 2897381 -147886172 + L1MB3 LINE L1 5241 5398 -785 1777 146 43 0 chr11 2897381 2897661 -147885892 + AluSg SINE Alu 1 292 -18 4234 191 86 89 chr11 2897661 2897975 -147885578 + L1MB3 LINE L1 5398 5796 -387 447 104 15 0 chr11 2897975 2898042 -147885511 + U6 snRNA snRNA 40 107 0 4234 191 86 89 chr11 2898042 2898256 -147885297 + L1MB3 LINE L1 5796 6009 -174 1634 191 0 4 chr11 2899101 2899378 -147884175 - AluJo SINE Alu -36 276 1 28 48 0 0 chr11 2901203 2901245 -147882308 + AT_rich Low_complexity Low_complexity 1 42 0 1540 164 34 27 chr11 2901563 2901856 -147881697 - AluSx SINE Alu -17 295 1 252 330 0 31 chr11 2902641 2902738 -147880815 - MER5B DNA MER1_type -81 97 4 1328 69 0 6 chr11 2902834 2903009 -147880544 - L1PA3 LINE L1 -8 6147 5974 1098 192 14 23 chr11 2903165 2903384 -147880169 - AluJo SINE Alu -95 217 1 855 138 32 0 chr11 2903422 2903545 -147880008 - FLAM_C SINE Alu -16 127 1 190 369 0 15 chr11 2904547 2904612 -147878941 - L2 LINE L2 -20 3252 3189 2131 136 7 3 chr11 2904686 2904987 -147878566 - AluSx SINE Alu -10 302 1 1241 185 82 55 chr11 2905058 2905350 -147878203 - AluSx SINE Alu 0 312 13 2416 71 0 0 chr11 2905490 2905786 -147877767 + AluY SINE Alu 1 296 -15 1605 228 49 23 chr11 2905788 2906261 -147877292 - Charlie1a DNA MER1_type -969 486 2 1847 121 11 21 chr11 2906602 2906915 -147876638 + AluSc SINE Alu 1 310 0 1121 154 8 9 chr11 2906916 2907183 -147876370 + AluJb SINE Alu 1 312 0 280 280 112 0 chr11 2907535 2907642 -147875911 - MIR SINE MIR -79 183 65 22 35 0 0 chr11 2907643 2907672 -147875881 + AT_rich Low_complexity Low_complexity 1 29 0 2042 125 3 7 chr11 2907716 2908021 -147875532 - AluSp SINE Alu -9 304 1 180 0 0 0 chr11 2908070 2908090 -147875463 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1851 103 52 7 chr11 2908093 2908364 -147875189 - AluSq SINE Alu -30 283 1 2308 86 0 0 chr11 2908681 2908973 -147874580 - AluSc SINE Alu -17 292 1 1942 125 35 3 chr11 2909096 2909385 -147874168 - AluSx SINE Alu -14 298 1 608 172 114 41 chr11 2910490 2910698 -147872855 + MIR SINE MIR 42 252 -10 1979 163 0 0 chr11 2910907 2911207 -147872346 - AluSx SINE Alu -12 300 1 463 274 48 58 chr11 2911261 2911469 -147872084 - MER102a DNA MER1_type 0 330 125 2294 103 0 3 chr11 2911517 2911829 -147871724 - AluSx SINE Alu -1 311 1 230 382 18 0 chr11 2911831 2911941 -147871612 - MER5B DNA MER1_type -17 161 50 885 223 46 65 chr11 2911957 2912217 -147871336 - AluJo SINE Alu -57 255 1 187 200 100 0 chr11 2912226 2912276 -147871277 - MER5B DNA MER1_type -123 55 1 37 0 0 0 chr11 2912766 2912803 -147870750 + AT_rich Low_complexity Low_complexity 1 37 0 2165 137 3 3 chr11 2912961 2913267 -147870286 - AluSp SINE Alu -7 306 1 1552 118 111 80 chr11 2913331 2913620 -147869933 - AluSx SINE Alu -14 298 1 1825 127 0 68 chr11 2914894 2915218 -147868335 - AluSx SINE Alu -10 302 1 272 336 73 0 chr11 2915477 2915587 -147867966 - L2 LINE L2 -10 3262 3145 1481 196 17 24 chr11 2916065 2916361 -147867192 - AluJo SINE Alu -17 295 2 747 182 0 0 chr11 2917098 2917219 -147866334 + FLAM_C SINE Alu 1 121 -22 29 28 0 0 chr11 2917234 2917270 -147866283 + AT_rich Low_complexity Low_complexity 1 36 0 507 262 81 62 chr11 2917421 2917570 -147865983 + MIR SINE MIR 19 175 -87 2287 104 3 7 chr11 2917570 2917869 -147865684 + AluSg SINE Alu 1 298 -12 507 262 81 62 chr11 2917869 2917929 -147865624 + MIR SINE MIR 175 232 -30 216 0 0 0 chr11 2918716 2918740 -147864813 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 324 0 0 0 chr11 2918739 2918775 -147864778 + (TG)n Simple_repeat Simple_repeat 2 37 0 960 188 218 4 chr11 2918813 2919047 -147864506 - AluSg1 SINE Alu -25 284 1 2288 89 0 7 chr11 2919090 2919382 -147864171 + AluY SINE Alu 22 311 0 2132 110 45 7 chr11 2919507 2919798 -147863755 + AluSx SINE Alu 1 302 -10 286 47 0 0 chr11 2920766 2920809 -147862744 - AluSc SINE Alu 0 308 266 1389 94 0 0 chr11 2920810 2920981 -147862572 - AluSc SINE Alu -138 171 1 552 314 123 35 chr11 2922746 2923151 -147860402 + L2 LINE L2 2832 3272 0 339 270 75 63 chr11 2923349 2923400 -147860153 - Charlie8 DNA MER1_type -2231 186 137 1786 167 13 31 chr11 2923400 2923718 -147859835 + AluJo SINE Alu 1 312 0 339 270 75 63 chr11 2923718 2923825 -147859728 - Charlie8 DNA MER1_type -2280 137 26 2653 155 65 6 chr11 2924129 2924639 -147858914 + L1MB2 LINE L1 5591 6130 -41 2467 86 0 6 chr11 2924640 2924953 -147858600 + AluY SINE Alu 1 311 0 2148 109 44 7 chr11 2925078 2925371 -147858182 + AluSx SINE Alu 1 304 -8 286 47 0 0 chr11 2926338 2926381 -147857172 - AluSc SINE Alu 0 301 259 1411 88 0 0 chr11 2926382 2926553 -147857000 - AluSc SINE Alu -138 171 1 24 32 0 0 chr11 2927701 2927732 -147855821 + AT_rich Low_complexity Low_complexity 1 31 0 2493 80 10 0 chr11 2928168 2928470 -147855083 - AluSq SINE Alu -8 305 1 371 278 143 79 chr11 2928509 2928865 -147854688 - L1ME4a LINE L1 0 6121 5743 2093 119 3 34 chr11 2929071 2929391 -147854162 - AluSq SINE Alu -3 310 1 875 135 14 21 chr11 2929648 2929789 -147853764 - FLAM_C SINE Alu -3 140 1 2213 119 6 3 chr11 2930082 2930393 -147853160 - AluSx SINE Alu 0 312 1 1948 158 0 0 chr11 2930419 2930698 -147852855 - AluSx SINE Alu -31 281 3 2055 147 3 0 chr11 2930710 2931010 -147852543 - AluSq SINE Alu -12 301 1 994 193 0 0 chr11 2931750 2931911 -147851642 - AluJ SINE Alu -23 289 129 658 202 0 17 chr11 2932029 2932148 -147851405 - AluJ SINE Alu -190 122 6 2400 100 0 0 chr11 2932160 2932461 -147851092 - AluY SINE Alu -10 301 1 2251 114 7 0 chr11 2932522 2932830 -147850723 - AluSq SINE Alu -3 310 1 1087 83 0 0 chr11 2932839 2932972 -147850581 - AluSq/x SINE Alu -179 133 1 608 228 0 0 chr11 2933230 2933344 -147850209 + FLAM_C SINE Alu 3 116 -27 1835 98 117 4 chr11 2934308 2934573 -147848980 - AluSg1 SINE Alu -12 297 3 822 155 101 54 chr11 2934576 2934744 -147848809 - FRAM SINE Alu -6 170 1 591 101 20 20 chr11 2934775 2934874 -147848679 - U13 snRNA snRNA 0 104 6 647 206 30 0 chr11 2934882 2935013 -147848540 - FLAM_C SINE Alu -8 135 1 2238 123 0 0 chr11 2935067 2935367 -147848186 + AluSx SINE Alu 1 300 -12 294 267 78 35 chr11 2935792 2935908 -147847645 - L1ME1 LINE L1 -46 6120 6000 1934 109 0 0 chr11 2936020 2936267 -147847286 - AluSx SINE Alu -65 247 1 491 145 46 2 chr11 2936271 2936301 -147847252 - L1ME1 LINE L1 -740 5430 5403 670 117 31 92 chr11 2936301 2936344 -147847209 - L1MB3 LINE L1 -3 6180 6136 2294 73 29 35 chr11 2936344 2936657 -147846896 - AluY SINE Alu 0 311 1 670 117 31 92 chr11 2936657 2936776 -147846777 - L1MB3 LINE L1 -47 6136 6028 491 145 46 2 chr11 2936776 2936871 -147846682 - L1ME1 LINE L1 -767 5403 5338 848 61 0 0 chr11 2936902 2937000 -147846553 - AluY SINE Alu -220 98 1 492 256 23 51 chr11 2937010 2937225 -147846328 - L1M4 LINE L1 -2768 3378 3170 1252 196 19 16 chr11 2937229 2937546 -147846007 + L1M4 LINE L1 4987 5304 -842 1269 193 8 29 chr11 2937546 2937784 -147845769 + AluJb SINE Alu 1 233 -79 1798 150 31 11 chr11 2937786 2938073 -147845480 - AluSx SINE Alu -14 298 6 402 238 0 10 chr11 2938079 2938180 -147845373 + L1MA10 LINE L1 6205 6304 -30 285 73 0 0 chr11 2938217 2938258 -147845295 + Alu SINE Alu 256 296 -5 2161 116 10 0 chr11 2939656 2939948 -147843605 + AluSp SINE Alu 1 295 -18 23 0 0 0 chr11 2940526 2940549 -147843004 + AT_rich Low_complexity Low_complexity 1 23 0 10452 152 60 63 chr11 2940648 2942153 -147841400 + Tigger1 DNA MER2_type 1 1509 -909 1807 156 3 7 chr11 2942153 2942435 -147841118 + AluJb SINE Alu 1 281 -31 10452 152 60 63 chr11 2942435 2942648 -147840905 + Tigger1 DNA MER2_type 1509 1721 -697 1753 166 17 20 chr11 2942648 2942950 -147840603 + AluJb SINE Alu 3 303 -9 10452 152 60 63 chr11 2942950 2943656 -147839897 + Tigger1 DNA MER2_type 1721 2418 0 2016 150 0 7 chr11 2944349 2944649 -147838904 - AluSx SINE Alu -8 304 7 286 304 65 93 chr11 2945061 2945280 -147838273 + MIR SINE MIR 23 236 -26 1535 103 43 47 chr11 2945280 2945514 -147838039 - AluSg SINE Alu -14 296 64 286 304 65 93 chr11 2945514 2945541 -147838012 + MIR SINE MIR 236 262 0 277 208 19 0 chr11 2945566 2945619 -147837934 + L2 LINE L2 3208 3261 -11 314 352 56 16 chr11 2945695 2945820 -147837733 - L2 LINE L2 -4 3268 3139 684 149 116 25 chr11 2945900 2946021 -147837532 + FLAM_C SINE Alu 2 133 0 296 269 181 40 chr11 2946108 2946257 -147837296 + L2 LINE L2 2919 3088 -184 262 325 18 61 chr11 2946414 2946528 -147837025 + MIR SINE MIR 19 127 -81 28 29 0 0 chr11 2948315 2948350 -147835203 + AT_rich Low_complexity Low_complexity 1 35 0 214 237 46 118 chr11 2948703 2948855 -147834698 + MIR SINE MIR 53 193 -69 192 293 43 0 chr11 2949035 2949089 -147834464 + MIR SINE MIR 48 104 -104 1722 173 7 0 chr11 2949206 2949477 -147834076 + AluJo SINE Alu 1 273 -39 2260 67 34 17 chr11 2949575 2949872 -147833681 - AluY SINE Alu -9 302 1 1236 148 31 10 chr11 2950293 2950489 -147833064 + AluJo SINE Alu 1 200 -112 231 339 99 6 chr11 2950557 2950728 -147832825 - L2 LINE L2 -960 2354 2168 410 289 59 48 chr11 2950844 2951031 -147832522 - MIR SINE MIR -15 247 59 237 335 7 20 chr11 2951675 2951827 -147831726 + GA-rich Low_complexity Low_complexity 2 151 0 227 302 223 0 chr11 2953457 2953596 -147829957 - MIR SINE MIR -16 246 77 249 233 48 101 chr11 2954521 2954559 -147828994 - MER34B LTR ERV1 -65 500 462 2421 74 0 0 chr11 2954559 2954855 -147828698 - AluY SINE Alu -15 296 1 249 233 48 101 chr11 2954855 2955005 -147828548 - MER34B LTR ERV1 -103 462 322 538 243 15 7 chr11 2956083 2956219 -147827334 - MIR SINE MIR 0 262 126 1124 178 130 0 chr11 2957580 2957827 -147825726 - MLT2B3 LTR ERVL -233 321 43 587 140 0 11 chr11 2957828 2957921 -147825632 + HY4 scRNA scRNA 2 93 0 1023 167 0 0 chr11 2957933 2958083 -147825470 + AluJo SINE Alu 87 236 -76 373 269 50 56 chr11 2958359 2958519 -147825034 - L2 LINE L2 -87 3185 3027 643 118 0 11 chr11 2959176 2959269 -147824284 + HY4 scRNA scRNA 2 93 0 1440 146 0 0 chr11 2959282 2959488 -147824065 + AluJo SINE Alu 86 291 -21 388 257 67 8 chr11 2959762 2959883 -147823670 + MIR SINE MIR 21 150 -82 1162 0 50 6 chr11 2959925 2960084 -147823469 + (AGATG)n Simple_repeat Simple_repeat 5 170 0 309 264 104 110 chr11 2960110 2960208 -147823345 + MIR SINE MIR 7 106 -156 2400 64 4 0 chr11 2960208 2960524 -147823029 - AluSp SINE Alu 0 317 1 309 264 104 110 chr11 2960524 2960606 -147822947 + MIR SINE MIR 106 187 -75 436 231 77 50 chr11 2960781 2960940 -147822613 - MIR3 SINE MIR -17 191 28 2507 68 0 10 chr11 2961289 2961596 -147821957 + AluSq SINE Alu 1 304 -9 184 338 0 27 chr11 2961736 2961810 -147821743 - MIR3 SINE MIR 0 208 137 312 197 16 0 chr11 2963873 2963934 -147819619 + MIR SINE MIR 81 142 -66 194 333 78 35 chr11 2964004 2964145 -147819408 - L2 LINE L2 -156 3116 2970 2280 108 3 16 chr11 2964719 2965035 -147818518 - AluSx SINE Alu 0 312 1 436 281 64 27 chr11 2965059 2965495 -147818058 - L1MC4a LINE L1 -306 5815 5437 2131 131 0 0 chr11 2965497 2965794 -147817759 - AluJo SINE Alu -15 297 1 217 164 0 55 chr11 2966156 2966211 -147817342 + L2 LINE L2 2333 2384 -930 1301 138 0 96 chr11 2966295 2966440 -147817113 + AluJo SINE Alu 1 158 -154 1978 96 4 0 chr11 2966440 2966691 -147816862 + AluSx SINE Alu 36 287 -25 306 0 0 0 chr11 2966697 2966731 -147816822 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1301 138 0 96 chr11 2966731 2966838 -147816715 + AluJo SINE Alu 163 235 -77 2426 92 0 3 chr11 2966853 2967158 -147816395 + AluSq SINE Alu 1 304 -9 308 264 54 14 chr11 2967245 2967399 -147816154 + MLT1K LTR MaLR 99 262 -326 658 282 68 19 chr11 2967503 2967866 -147815687 + LTR16C LTR ERVL 52 489 -2 263 380 8 0 chr11 2969413 2969534 -147814019 - L2 LINE L2 -773 2541 2420 717 36 0 0 chr11 2969576 2969660 -147813893 - LTR7 LTR ERV1 -2 448 365 10187 95 3 10 chr11 2969760 2971233 -147812320 - HERVH LTR ERV1 -6251 1462 1 2295 66 5 2 chr11 2971235 2971593 -147811960 - LTR7 LTR ERV1 -2 448 1 1143 145 31 110 chr11 2971700 2971873 -147811680 - L1MA10 LINE L1 0 6334 6149 1906 143 6 16 chr11 2971873 2972188 -147811365 - AluSx SINE Alu 0 312 1 1980 100 14 11 chr11 2972193 2972503 -147811050 - AluSp SINE Alu 0 311 1 195 42 0 0 chr11 2972512 2972536 -147811017 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1143 145 31 110 chr11 2972536 2972663 -147810890 - L1MA10 LINE L1 -197 6137 6042 235 200 0 0 chr11 2972676 2972721 -147810832 + L2 LINE L2 3226 3270 -2 211 370 59 0 chr11 2973262 2973381 -147810172 + L2 LINE L2 2624 2749 -565 442 315 129 4 chr11 2973626 2973867 -147809686 + L2 LINE L2 2919 3189 -83 1699 205 109 17 chr11 2974598 2975018 -147808535 + LTR2B LTR ERV1 32 490 0 2393 59 0 0 chr11 2975349 2975638 -147807915 - AluSc SINE Alu -20 289 1 1758 104 107 4 chr11 2975995 2976275 -147807278 - AluSg1 SINE Alu 0 309 1 267 275 14 0 chr11 2978278 2978347 -147805206 - L3 LINE CR1 -14 1563 1494 312 288 0 0 chr11 2978429 2978502 -147805051 - MIR SINE MIR -139 123 51 2216 100 0 3 chr11 2978505 2978805 -147804748 + AluSx SINE Alu 7 305 -7 1061 146 12 0 chr11 2978805 2978976 -147804577 + AluSg/x SINE Alu 134 306 -6 2333 66 0 7 chr11 2981139 2981442 -147802111 + AluY SINE Alu 1 301 -10 187 302 66 90 chr11 2982674 2983008 -147800545 + L2 LINE L2 2947 3272 0 229 258 0 16 chr11 2983009 2983071 -147800482 + (TGAG)n Simple_repeat Simple_repeat 3 63 0 380 254 118 0 chr11 2985427 2985537 -147798016 - L2 LINE L2 0 3313 3191 839 167 0 0 chr11 2985591 2985723 -147797830 + FLAM_C SINE Alu 1 132 -11 25 0 0 0 chr11 2985723 2985748 -147797805 + AT_rich Low_complexity Low_complexity 1 25 0 454 279 100 79 chr11 2985765 2986205 -147797348 - L2 LINE L2 -179 3093 2621 1911 148 0 3 chr11 2986205 2986496 -147797057 + AluSx SINE Alu 1 290 -22 454 279 100 79 chr11 2986496 2986551 -147797002 - L2 LINE L2 -651 2621 2569 1586 154 82 4 chr11 2986908 2987188 -147796365 + AluJb SINE Alu 3 304 -8 252 366 131 34 chr11 2987606 2988018 -147795535 + L2 LINE L2 2819 3270 -2 1719 155 4 4 chr11 2988116 2988394 -147795159 + AluJb SINE Alu 23 300 -12 2141 111 7 0 chr11 2988414 2988712 -147794841 + AluSx SINE Alu 1 300 -12 1435 258 177 9 chr11 2988762 2988857 -147794696 + L1MC4 LINE L1 6969 7047 -995 2254 115 0 0 chr11 2988857 2989169 -147794384 + AluSx SINE Alu 1 312 0 1435 258 177 9 chr11 2989169 2989751 -147793802 + L1MC4 LINE L1 7047 7760 -282 2118 98 3 0 chr11 2989753 2990048 -147793505 + AluSg SINE Alu 1 296 -14 350 310 23 0 chr11 2990048 2990135 -147793418 + L1MC4 LINE L1 6615 6703 -1339 334 298 48 0 chr11 2990131 2990215 -147793338 - L1MC4 LINE L1 -1339 6703 6616 * 559 270 132 9 chr11 2990216 2990523 -147793030 + L1MC4 LINE L1 7592 8042 0 213 232 0 0 chr11 2990535 2990604 -147792949 + (TGAA)n Simple_repeat Simple_repeat 3 71 0 2150 81 3 11 chr11 2990936 2991240 -147792313 - AluSx SINE Alu 0 303 2 250 278 213 9 chr11 2991634 2991742 -147791811 - MIR3 SINE MIR -28 180 51 947 91 0 0 chr11 2992848 2992969 -147790584 + AluJ SINE Alu 3 123 -189 23 0 0 0 chr11 2992969 2992992 -147790561 + AT_rich Low_complexity Low_complexity 1 23 0 349 307 83 83 chr11 2993115 2993428 -147790125 + L2 LINE L2 2873 3185 -87 854 225 6 12 chr11 2993565 2993738 -147789815 + AluJ SINE Alu 123 294 -18 284 350 80 25 chr11 2994295 2994495 -147789058 + L2 LINE L2 2977 3187 -85 933 175 0 18 chr11 2994513 2994684 -147788869 - AluJo SINE Alu -13 299 132 1724 160 3 3 chr11 2994699 2994981 -147788572 - AluJb SINE Alu -30 282 1 318 291 12 0 chr11 2995427 2995513 -147788040 - L3 LINE CR1 -84 1493 1407 2170 119 0 0 chr11 2995542 2995854 -147787699 - AluSx SINE Alu 0 312 1 841 154 0 22 chr11 2995874 2996010 -147787543 - AluJo SINE Alu -169 133 1 1133 77 11 17 chr11 2996017 2996198 -147787355 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1448 145 0 4 chr11 2996224 2996451 -147787102 - AluSg/x SINE Alu -1 311 86 552 332 118 26 chr11 2996451 2996600 -147786953 - L3 LINE CR1 -196 1381 1247 1759 100 4 8 chr11 2996600 2996850 -147786703 - AluSx SINE Alu -6 306 58 552 332 118 26 chr11 2996850 2997116 -147786437 - L3 LINE CR1 -330 1247 928 257 189 19 0 chr11 2998246 2998299 -147785254 + MIR SINE MIR 112 165 -97 1767 162 10 10 chr11 2999064 2999372 -147784181 + AluJb SINE Alu 4 311 -1 1772 93 0 16 chr11 2999377 2999624 -147783929 + AluSx SINE Alu 1 243 -69 213 214 29 57 chr11 3000144 3000214 -147783339 - L2 LINE L2 -182 3090 3023 186 289 0 0 chr11 3000302 3000347 -147783206 - L2 LINE L2 -569 2745 2701 1132 149 9 33 chr11 3000351 3000566 -147782987 - AluJb SINE Alu -18 294 85 270 321 102 27 chr11 3000567 3000754 -147782799 - L2 LINE L2 -601 2713 2513 234 128 0 0 chr11 3001123 3001162 -147782391 + (TG)n Simple_repeat Simple_repeat 2 40 0 1938 107 68 0 chr11 3001693 3001974 -147781579 + AluSq SINE Alu 1 300 -13 1013 160 24 0 chr11 3001974 3002143 -147781410 + AluSg/x SINE Alu 132 304 -6 640 236 25 19 chr11 3002144 3002301 -147781252 - MIR SINE MIR -82 180 23 2043 102 7 3 chr11 3002773 3003066 -147780487 + AluSx SINE Alu 2 295 -17 1495 159 53 40 chr11 3003076 3003377 -147780176 + AluJb SINE Alu 1 305 -7 2533 40 0 0 chr11 3003378 3003675 -147779878 + AluY SINE Alu 1 297 -14 1408 157 132 18 chr11 3003684 3003964 -147779589 + AluJb SINE Alu 1 312 0 2060 126 7 0 chr11 3004320 3004630 -147778923 - AluSx SINE Alu 0 312 1 300 301 8 38 chr11 3007235 3007368 -147776185 + MIR3 SINE MIR 53 181 -27 966 266 40 4 chr11 3009683 3009918 -147773635 + MIR SINE MIR 2 248 -14 2431 54 10 0 chr11 3009918 3010215 -147773338 - AluY SINE Alu -11 300 1 966 266 40 4 chr11 3010215 3010231 -147773322 + MIR SINE MIR 248 262 0 2185 113 7 0 chr11 3010545 3010846 -147772707 - AluSx SINE Alu -9 303 1 2302 81 0 7 chr11 3011046 3011342 -147772211 - AluSg SINE Alu -16 294 1 626 244 42 63 chr11 3011499 3011668 -147771885 + MIR SINE MIR 18 182 -80 1988 139 0 3 chr11 3011668 3011970 -147771583 + AluJo SINE Alu 1 301 -11 626 244 42 63 chr11 3011970 3012038 -147771515 + MIR SINE MIR 182 250 -12 200 216 0 0 chr11 3012709 3012746 -147770807 + (TG)n Simple_repeat Simple_repeat 1 37 0 404 301 48 2 chr11 3012831 3012963 -147770590 + MIR SINE MIR 21 156 -74 463 250 119 18 chr11 3013489 3013657 -147769896 - MIR SINE MIR -57 205 21 372 234 0 75 chr11 3013684 3013791 -147769762 + MIR SINE MIR 68 166 -96 730 147 123 68 chr11 3014201 3014364 -147769189 + FAM SINE Alu 1 172 -3 1750 138 12 63 chr11 3014395 3014714 -147768839 - AluJb SINE Alu -9 303 1 604 245 18 31 chr11 3014844 3015007 -147768546 + MIR SINE MIR 41 201 -61 202 331 107 8 chr11 3015080 3015201 -147768352 + L2 LINE L2 2898 3030 -242 1855 130 0 0 chr11 3015251 3015513 -147768040 - AluSx SINE Alu -46 266 5 194 240 140 40 chr11 3016690 3016790 -147766763 + L2 LINE L2 2932 3041 -231 180 0 0 0 chr11 3017276 3017296 -147766257 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2236 99 0 13 chr11 3017511 3017823 -147765730 + AluSx SINE Alu 3 310 -2 2224 105 0 13 chr11 3018055 3018370 -147765183 + AluSx SINE Alu 1 311 -1 369 117 0 0 chr11 3020901 3020961 -147762592 + (CA)n Simple_repeat Simple_repeat 1 60 0 297 51 0 0 chr11 3021027 3021066 -147762487 + (CA)n Simple_repeat Simple_repeat 2 40 0 30 0 0 0 chr11 3022165 3022195 -147761358 + GC_rich Low_complexity Low_complexity 1 30 0 203 95 48 0 chr11 3022419 3022461 -147761092 + (CGGGG)n Simple_repeat Simple_repeat 5 48 0 1486 201 8 0 chr11 3073454 3073722 -147709831 + AluJo SINE Alu 5 274 -38 338 304 199 0 chr11 3073963 3074124 -147709429 - MIR SINE MIR -9 253 61 216 267 93 23 chr11 3074735 3074821 -147708732 + L2 LINE L2 3169 3260 -12 23 0 0 0 chr11 3074926 3074949 -147708604 + AT_rich Low_complexity Low_complexity 1 23 0 188 268 18 0 chr11 3074958 3075014 -147708539 - MIR SINE MIR -21 241 185 21 0 0 0 chr11 3075018 3075039 -147708514 + AT_rich Low_complexity Low_complexity 1 21 0 466 274 43 0 chr11 3075065 3075182 -147708371 + L2 LINE L2 3187 3308 -5 363 239 197 28 chr11 3075212 3075354 -147708199 - MIR SINE MIR -84 178 13 13439 24 1 2 chr11 3075477 3077030 -147706523 - L1P LINE L1 -1043 5103 3553 1863 88 4 0 chr11 3077026 3077275 -147706278 - L1P LINE L1 -5671 475 226 * 1002 171 64 0 chr11 3077401 3077588 -147705965 + L1MB5 LINE L1 5968 6166 -8 1726 193 7 0 chr11 3077739 3078035 -147705518 + AluJb SINE Alu 3 300 -12 731 278 179 34 chr11 3078068 3078514 -147705039 - MLT1J LTR MaLR 0 511 1 2214 112 3 3 chr11 3078559 3078853 -147704700 + AluSq SINE Alu 1 294 -19 206 227 0 23 chr11 3078920 3078964 -147704589 + GA-rich Low_complexity Low_complexity 4 46 0 759 258 32 24 chr11 3079536 3079784 -147703769 - MIR SINE MIR -1 261 12 430 293 50 14 chr11 3080052 3080192 -147703361 + MIR SINE MIR 3 147 -115 2595 68 0 0 chr11 3080328 3080714 -147702839 + AluY SINE Alu 1 386 0 201 147 0 0 chr11 3081062 3081096 -147702457 + (CA)n Simple_repeat Simple_repeat 1 34 0 2261 114 0 3 chr11 3081163 3081462 -147702091 + AluSx SINE Alu 1 298 -14 274 269 0 13 chr11 3081592 3081670 -147701883 - L2 LINE L2 0 3272 3196 419 223 79 114 chr11 3081789 3081991 -147701562 - LTR67 LTR ERVL -9 548 354 786 257 31 9 chr11 3082571 3082793 -147700760 - MIR SINE MIR -2 260 34 185 232 152 18 chr11 3083256 3083368 -147700185 + L2 LINE L2 2842 2968 -304 313 264 79 36 chr11 3084185 3084325 -147699228 - MIR3 SINE MIR -42 166 21 237 235 98 10 chr11 3084842 3084944 -147698609 - MIR SINE MIR -4 258 148 12806 95 6 8 chr11 3085056 3086852 -147696701 - L1P LINE L1 -4355 1791 1 1023 207 14 33 chr11 3087057 3087106 -147696447 + MER58A DNA MER1_type 4 52 -2368 1628 158 62 11 chr11 3087106 3087378 -147696175 - AluJo SINE Alu -26 286 1 1023 207 14 33 chr11 3087378 3087541 -147696012 + MER58A DNA MER1_type 52 212 -12 199 409 36 0 chr11 3087543 3087653 -147695900 + L2 LINE L2 2868 2981 -291 438 243 181 33 chr11 3088115 3088325 -147695228 + MIR SINE MIR 2 242 -20 3237 110 15 25 chr11 3088894 3089414 -147694139 + L1MA6 LINE L1 5768 6282 -18 301 115 0 0 chr11 3089437 3089489 -147694064 - AluJo SINE Alu 0 302 251 1200 175 0 5 chr11 3089489 3089689 -147693864 - AluJo SINE Alu -113 199 1 46 33 0 0 chr11 3089718 3089778 -147693775 + AT_rich Low_complexity Low_complexity 1 60 0 1418 273 21 40 chr11 3090164 3090416 -147693137 - L2 LINE L2 -275 3038 2783 2198 102 3 38 chr11 3090416 3090594 -147692959 - AluSp SINE Alu -11 302 138 2951 6 0 9 chr11 3090594 3090913 -147692640 - AluYb8 SINE Alu -2 316 1 2198 102 3 38 chr11 3090913 3091047 -147692506 - AluSp SINE Alu -175 138 1 1418 273 21 40 chr11 3091047 3091320 -147692233 - L2 LINE L2 -530 2783 2524 1388 129 19 5 chr11 3091877 3092086 -147691467 + L1P3 LINE L1 10 221 -6240 327 267 199 17 chr11 3092485 3092694 -147690859 + MIR SINE MIR 10 247 -15 1693 133 13 63 chr11 3093081 3093302 -147690251 - MLT1A1 LTR MaLR 0 365 161 2396 100 0 0 chr11 3093302 3093613 -147689940 - AluY SINE Alu 0 311 1 1693 133 13 63 chr11 3093613 3093692 -147689861 - MLT1A1 LTR MaLR -204 161 80 999 136 7 7 chr11 3093698 3093853 -147689700 - LTR32 LTR ERVL 0 471 317 1879 182 32 15 chr11 3093932 3094273 -147689280 - LTR32 LTR ERVL -110 361 15 541 152 0 0 chr11 3094273 3094352 -147689201 - MLT1A1 LTR MaLR -295 79 1 272 277 54 36 chr11 3094581 3094693 -147688860 + L2 LINE L2 3158 3271 -1 542 283 61 100 chr11 3094726 3095087 -147688466 + L2 LINE L2 2924 3270 -2 487 250 123 26 chr11 3095635 3095837 -147687716 + MIR SINE MIR 38 262 0 2129 111 35 0 chr11 3096762 3097050 -147686503 + AluSx SINE Alu 1 298 -14 223 313 76 8 chr11 3097390 3097521 -147686032 - MIR SINE MIR -11 251 112 1876 154 0 39 chr11 3097615 3097921 -147685632 - AluJb SINE Alu -18 294 1 2398 126 3 15 chr11 3098221 3098562 -147684991 - MER1B DNA MER1_type 0 337 1 850 250 9 4 chr11 3098850 3099134 -147684419 - MIR SINE MIR -13 249 1 2422 94 3 0 chr11 3099770 3100077 -147683476 + AluSg SINE Alu 1 308 -2 263 340 108 30 chr11 3100205 3100537 -147683016 - L2 LINE L2 -395 2919 2562 481 306 128 37 chr11 3100653 3101248 -147682305 - L2 LINE L2 -979 2335 1687 520 264 54 0 chr11 3101505 3101653 -147681900 + L2 LINE L2 2191 2346 -968 1799 257 75 17 chr11 3101657 3102433 -147681120 + L2 LINE L2 2488 3312 -1 269 274 69 20 chr11 3102454 3102556 -147680997 - MIR SINE MIR -32 230 124 2419 82 0 0 chr11 3102566 3102860 -147680693 + AluY SINE Alu 1 294 -17 1737 77 0 0 chr11 3103778 3103986 -147679567 + AluY SINE Alu 1 208 -103 491 60 0 0 chr11 3103986 3104053 -147679500 + AluY SINE Alu 239 305 -4 271 349 0 0 chr11 3105237 3105323 -147678230 + L2 LINE L2 3186 3271 -1 351 0 0 0 chr11 3105432 3105471 -147678082 + (CA)n Simple_repeat Simple_repeat 2 40 0 235 167 0 62 chr11 3105930 3105978 -147677575 + MER58B DNA MER1_type 47 91 -250 1348 176 43 4 chr11 3107232 3107487 -147676066 + MER58B DNA MER1_type 76 340 -1 4290 154 18 72 chr11 3107511 3108421 -147675132 - L1MB8 LINE L1 -6 6172 5313 1812 174 31 3 chr11 3108439 3108766 -147674787 - L1PA16 LINE L1 -9 6157 5822 767 156 0 0 chr11 3108786 3108914 -147674639 - FRAM SINE Alu 0 40 1 355 316 151 34 chr11 3109285 3109636 -147673917 + L3 LINE CR1 948 1339 -238 1638 176 56 0 chr11 3109752 3110048 -147673505 + AluJb SINE Alu 1 311 0 2313 92 3 13 chr11 3110662 3110966 -147672587 - AluSq SINE Alu -12 301 1 2041 126 11 0 chr11 3111294 3111580 -147671973 + AluSx SINE Alu 1 289 -23 247 167 0 0 chr11 3111983 3112025 -147671528 + L3 LINE CR1 1533 1574 -3 264 231 0 46 chr11 3112345 3112410 -147671143 - MIR SINE MIR -64 144 83 429 221 65 26 chr11 3113171 3113325 -147670228 + MIR SINE MIR 79 238 -24 843 194 159 9 chr11 3113652 3113879 -147669674 + MIR SINE MIR 2 262 0 254 254 0 0 chr11 3114409 3114472 -147669081 - L1M4 LINE L1 -875 5271 5209 2487 53 3 10 chr11 3114773 3115076 -147668477 + AluY SINE Alu 1 301 -10 1314 223 70 76 chr11 3115079 3115283 -147668270 - L1M4 LINE L1 -1059 5087 4883 2182 134 0 0 chr11 3115283 3115582 -147667971 + AluSx SINE Alu 1 299 -13 1314 223 70 76 chr11 3115582 3115940 -147667613 - L1M4 LINE L1 -1263 4883 4525 227 30 0 30 chr11 3115940 3115973 -147667580 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 524 137 253 0 chr11 3115979 3116074 -147667479 - FLAM_C SINE Alu -14 119 1 1314 223 70 76 chr11 3116074 3116145 -147667408 - L1M4 LINE L1 -1626 4520 4450 2548 78 0 0 chr11 3116145 3116454 -147667099 - AluY SINE Alu -2 309 1 1314 223 70 76 chr11 3116454 3116525 -147667028 - L1M4 LINE L1 -1696 4450 4378 1994 234 81 47 chr11 3116525 3117071 -147666482 - Charlie7 DNA MER1_type -1125 1487 903 2209 100 0 0 chr11 3117071 3117379 -147666174 + AluSc SINE Alu 1 308 0 1994 234 81 47 chr11 3117379 3117621 -147665932 - Charlie7 DNA MER1_type -1709 903 671 586 197 87 104 chr11 3117638 3117821 -147665732 + MER58A DNA MER1_type 45 224 0 1185 268 138 53 chr11 3117824 3118447 -147665106 - Charlie7 DNA MER1_type -1936 676 1 1228 42 24 0 chr11 3118917 3119082 -147664471 + (GAAA)n Simple_repeat Simple_repeat 3 171 0 211 318 16 0 chr11 3119106 3119169 -147664384 + MIR SINE MIR 76 139 -69 2304 95 0 32 chr11 3119627 3119942 -147663611 + AluSx SINE Alu 1 305 -7 1022 166 37 0 chr11 3120601 3120764 -147662789 + AluJo SINE Alu 1 169 -143 1451 85 0 40 chr11 3120824 3121023 -147662530 + AluSg/x SINE Alu 105 295 -15 214 191 107 71 chr11 3121364 3121448 -147662105 - L2 LINE L2 0 3272 3186 718 178 0 0 chr11 3121628 3121735 -147661818 + FLAM_C SINE Alu 24 130 -13 192 47 47 23 chr11 3122482 3122525 -147661028 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 201 264 0 19 chr11 3122614 3122667 -147660886 - L2 LINE L2 -8 3264 3213 924 201 126 10 chr11 3122668 3122867 -147660686 + MER58A DNA MER1_type 2 223 -1 462 183 139 17 chr11 3122876 3122991 -147660562 + L1ME3 LINE L1 6027 6155 -7 2018 125 27 10 chr11 3123096 3123391 -147660162 + AluSx SINE Alu 7 306 -6 23 33 0 0 chr11 3123391 3123421 -147660132 + AT_rich Low_complexity Low_complexity 1 30 0 1254 100 0 0 chr11 3123953 3124113 -147659440 - AluSg/x SINE Alu -16 294 135 253 291 35 0 chr11 3124451 3124537 -147659016 - MIR SINE MIR -107 155 67 279 213 17 43 chr11 3125174 3125263 -147658290 - HERV16 LTR ERVL -2848 2148 2082 1222 131 159 19 chr11 3125298 3125544 -147658009 + L1MB7 LINE L1 5839 6118 -66 776 214 0 0 chr11 3125545 3125676 -147657877 + FLAM_C SINE Alu 2 132 -11 1539 188 3 14 chr11 3125714 3126001 -147657552 - AluJo SINE Alu -20 292 9 2373 76 3 0 chr11 3126300 3126589 -147656964 + AluSq SINE Alu 1 290 -23 1232 255 79 44 chr11 3127055 3127241 -147656312 + MLT1K LTR MaLR 3 181 -295 1775 140 12 64 chr11 3127241 3127570 -147655983 - AluJb SINE Alu 0 312 1 1232 255 79 44 chr11 3127570 3127838 -147655715 + MLT1K LTR MaLR 181 473 -3 2033 155 3 0 chr11 3128071 3128375 -147655178 + AluJb SINE Alu 1 305 -7 2200 87 13 23 chr11 3128917 3129053 -147654500 + AluSx SINE Alu 1 137 -175 2305 93 7 3 chr11 3129053 3129354 -147654199 + AluSq SINE Alu 1 302 -11 2200 87 13 23 chr11 3129354 3129517 -147654036 + AluSx SINE Alu 137 297 -15 4234 162 50 72 chr11 3129566 3129712 -147653841 + L1MB5 LINE L1 4967 5115 -1065 188 83 0 28 chr11 3129712 3129748 -147653805 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1785 144 4 11 chr11 3129754 3130024 -147653529 - AluSx SINE Alu -38 274 7 4234 162 50 72 chr11 3130024 3130107 -147653446 + L1MB5 LINE L1 5120 5203 -977 2524 56 0 7 chr11 3130107 3130410 -147653143 + AluY SINE Alu 1 301 -10 753 216 0 8 chr11 3130413 3130547 -147653006 + FLAM_C SINE Alu 1 133 0 4234 162 50 72 chr11 3130547 3131064 -147652489 + L1MB5 LINE L1 5205 5547 -633 2199 109 3 0 chr11 3131064 3131358 -147652195 + AluSc SINE Alu 1 295 -14 4234 162 50 72 chr11 3131358 3131978 -147651575 + L1MB5 LINE L1 5547 6180 0 36261 85 12 18 chr11 3132109 3135084 -147648469 + L1PA6 LINE L1 240 3163 -2991 2430 76 0 10 chr11 3135084 3135398 -147648155 + AluY SINE Alu 1 311 0 36261 85 12 18 chr11 3135398 3138373 -147645180 + L1PA6 LINE L1 3163 6154 0 468 137 86 26 chr11 3138403 3138520 -147645033 + MIR SINE MIR 69 192 -70 236 177 89 137 chr11 3138553 3138620 -147644933 + Charlie8 DNA MER1_type 36 96 -2321 2036 148 0 0 chr11 3138620 3138918 -147644635 + AluSx SINE Alu 1 298 -14 236 177 89 137 chr11 3138918 3138974 -147644579 + Charlie8 DNA MER1_type 96 153 -2264 1652 192 0 7 chr11 3138976 3139247 -147644306 + AluJb SINE Alu 1 269 -43 903 143 8 0 chr11 3139466 3139592 -147643961 - FLAM_A SINE Alu -2 131 5 254 309 52 10 chr11 3139624 3139721 -147643832 + L2 LINE L2 3122 3222 -50 3319 256 63 23 chr11 3140146 3141047 -147642506 + L1M4b LINE L1 11 947 -5912 1285 167 0 39 chr11 3141047 3141108 -147642445 + AluJo SINE Alu 84 146 -166 301 93 37 0 chr11 3141108 3141162 -147642391 + L1PA8 LINE L1 6117 6172 0 1285 167 0 39 chr11 3141162 3141333 -147642220 + AluJo SINE Alu 146 307 -5 2873 204 84 44 chr11 3141334 3141718 -147641835 + L1M4b LINE L1 945 1312 -5647 224 30 30 0 chr11 3141718 3141751 -147641802 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 2873 204 84 44 chr11 3141751 3142247 -147641306 + L1M4b LINE L1 1312 1787 -5172 1748 148 7 4 chr11 3142247 3142517 -147641036 + AluSx SINE Alu 37 307 -5 2873 204 84 44 chr11 3142517 3142995 -147640558 + L1M4b LINE L1 1787 2369 -4590 1227 259 100 92 chr11 3142995 3143310 -147640243 - L2 LINE L2 -31 3282 2971 2187 108 3 0 chr11 3143310 3143597 -147639956 - AluSx SINE Alu -24 288 1 1227 259 100 92 chr11 3143597 3144224 -147639329 - L2 LINE L2 -342 2971 2327 1509 186 13 16 chr11 3144224 3144531 -147639022 + L1M4 LINE L1 5027 5332 -814 1736 167 20 26 chr11 3144531 3144837 -147638716 - AluSx SINE Alu -6 306 3 24 32 0 0 chr11 3144845 3144876 -147638677 + AT_rich Low_complexity Low_complexity 1 31 0 1752 110 13 77 chr11 3144876 3144991 -147638562 + L1P4 LINE L1 5476 5597 -569 2602 57 3 6 chr11 3144991 3145305 -147638248 - AluSp SINE Alu 0 313 1 1752 110 13 77 chr11 3145305 3145489 -147638064 + L1P4 LINE L1 5597 5756 -410 1000 105 0 26 chr11 3145501 3145654 -147637899 + AluJo SINE Alu 1 149 -163 21 0 0 0 chr11 3145776 3145797 -147637756 + AT_rich Low_complexity Low_complexity 1 21 0 1599 173 26 4 chr11 3146055 3146326 -147637227 - AluJo SINE Alu -30 282 6 311 216 137 20 chr11 3146754 3146856 -147636697 - MIR SINE MIR -27 235 122 827 160 30 15 chr11 3147088 3147219 -147636334 + FLAM_A SINE Alu 1 133 0 212 0 36 0 chr11 3147246 3147274 -147636279 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1211 128 35 66 chr11 3147333 3147559 -147635994 - MER20 DNA MER1_type 0 219 1 804 123 0 0 chr11 3147600 3147714 -147635839 - AluSg SINE Alu -23 289 176 803 114 0 0 chr11 3147714 3147819 -147635734 - AluSg SINE Alu -205 105 1 2053 149 0 9 chr11 3148606 3148921 -147634632 - AluJo SINE Alu 0 312 1 261 367 43 7 chr11 3148921 3149060 -147634493 + MIR SINE MIR 92 235 -27 252 336 35 9 chr11 3149097 3149213 -147634340 - MIR SINE MIR -27 235 117 567 161 108 0 chr11 3149268 3149398 -147634155 + L1MB7 LINE L1 6041 6184 0 1957 144 0 13 chr11 3149520 3149825 -147633728 - AluSx SINE Alu -11 301 1 220 246 0 0 chr11 3150409 3150454 -147633099 + CT-rich Low_complexity Low_complexity 5 52 -9 2222 112 7 0 chr11 3150454 3150757 -147632796 - AluSq SINE Alu -8 305 1 220 246 0 0 chr11 3150757 3150768 -147632785 + CT-rich Low_complexity Low_complexity 51 61 0 352 296 148 0 chr11 3151282 3151397 -147632156 + MIR SINE MIR 23 154 -108 287 333 8 0 chr11 3151879 3152011 -147631542 + (TG)n Simple_repeat Simple_repeat 2 134 0 452 308 39 19 chr11 3153134 3153342 -147630211 - L2 LINE L2 -196 3076 2865 30345 30 4 1 chr11 3153497 3157831 -147625722 + L1PA3 LINE L1 1811 6155 0 2602 119 45 31 chr11 3158110 3158490 -147625063 + MSTA LTR MaLR 1 389 -39 1954 144 10 13 chr11 3158490 3158802 -147624751 - AluSx SINE Alu -1 311 1 2602 119 45 31 chr11 3158802 3158840 -147624713 + MSTA LTR MaLR 389 425 -3 1771 135 114 3 chr11 3160143 3160440 -147623113 + MER7A DNA MER2_type 2 329 -17 3565 139 11 20 chr11 3160446 3161006 -147622547 - MER6A DNA MER2_type -50 555 1 2299 74 7 13 chr11 3161097 3161395 -147622158 + AluY SINE Alu 1 296 -15 2148 108 17 3 chr11 3161418 3161740 -147621813 + AluSx SINE Alu 1 312 0 190 246 53 18 chr11 3162116 3162173 -147621380 + L2 LINE L2 3004 3062 -210 858 140 22 0 chr11 3162581 3162717 -147620836 + AluJb SINE Alu 1 139 -173 233 318 149 0 chr11 3162921 3163028 -147620525 + L2 LINE L2 3191 3313 0 350 303 114 18 chr11 3163535 3163734 -147619819 + MIR3 SINE MIR 2 220 -42 1124 231 12 16 chr11 3164009 3164252 -147619301 + MIR SINE MIR 12 253 -9 1997 97 6 74 chr11 3164256 3164567 -147618986 + AluSx SINE Alu 1 290 -22 314 295 66 41 chr11 3164605 3164682 -147618871 + L2 LINE L2 3142 3225 -47 2423 155 77 10 chr11 3164682 3165083 -147618470 - MSTA LTR MaLR 0 428 1 314 295 66 41 chr11 3165083 3165127 -147618426 + L2 LINE L2 3225 3266 -6 418 302 26 0 chr11 3165163 3165279 -147618274 + MIR SINE MIR 75 193 -69 449 267 17 33 chr11 3165762 3165930 -147617623 + MIR3 SINE MIR 23 186 -22 305 283 0 33 chr11 3165930 3166022 -147617531 + MIR3 SINE MIR 83 171 -37 375 302 142 12 chr11 3166275 3166444 -147617109 + MIR3 SINE MIR 1 191 -17 512 299 92 5 chr11 3166716 3166900 -147616653 + MIR SINE MIR 29 228 -34 201 301 14 14 chr11 3167440 3167513 -147616040 - MIR SINE MIR -98 164 92 216 176 0 0 chr11 3167801 3167835 -147615718 - L2 LINE L2 -14 3299 3266 798 186 37 12 chr11 3167918 3168079 -147615474 - MIR SINE MIR -17 245 81 622 301 37 50 chr11 3168066 3168365 -147615188 - L2 LINE L2 -149 3123 2829 * 2347 172 161 47 chr11 3168630 3169095 -147614458 - L1MD2 LINE L1 -1 6358 5805 2428 84 0 0 chr11 3169095 3169392 -147614161 - AluSg SINE Alu -13 297 1 2347 172 161 47 chr11 3169392 3169541 -147614012 - L1MD2 LINE L1 -554 5805 5674 311 339 42 52 chr11 3169542 3169587 -147613966 - L2 LINE L2 -563 2751 2707 1926 156 7 13 chr11 3169587 3169888 -147613665 - AluJo SINE Alu -13 299 1 311 339 42 52 chr11 3169888 3170034 -147613519 - L2 LINE L2 -607 2707 2562 1763 134 76 0 chr11 3171088 3171371 -147612182 + AluJb SINE Alu 1 295 -17 201 312 43 35 chr11 3172500 3172641 -147610912 + MIR3 SINE MIR 50 191 -17 1884 176 23 0 chr11 3172730 3173031 -147610522 - AluJb SINE Alu -4 308 1 517 267 74 57 chr11 3173306 3173602 -147609951 - L2 LINE L2 -1 3312 3012 2924 190 58 18 chr11 3173714 3174340 -147609213 + L1ME2 LINE L1 5504 6154 -10 660 201 44 87 chr11 3174354 3174596 -147608957 + L1ME3 LINE L1 5915 6154 -12 648 158 17 0 chr11 3174653 3174773 -147608780 - MER5B DNA MER1_type -56 122 1 47 0 0 0 chr11 3174848 3174895 -147608658 + AT_rich Low_complexity Low_complexity 1 47 0 337 157 0 0 chr11 3174895 3174946 -147608607 - MER66A LTR ERV1 -140 338 288 363 323 16 0 chr11 3175004 3175128 -147608425 - L2 LINE L2 -468 2846 2721 222 284 203 42 chr11 3175273 3175583 -147607970 - L2 LINE L2 -800 2514 2155 1016 184 6 6 chr11 3175633 3175807 -147607746 + AluJb SINE Alu 138 311 -1 737 193 42 31 chr11 3175854 3176046 -147607507 - L2 LINE L2 0 3313 3120 2063 115 0 7 chr11 3176209 3176512 -147607041 - AluSg SINE Alu 0 301 1 1429 199 10 34 chr11 3176529 3176820 -147606733 - AluJo SINE Alu -28 284 1 2339 93 0 0 chr11 3176830 3177119 -147606434 - AluSc SINE Alu -20 289 1 748 185 15 0 chr11 3177183 3177313 -147606240 + FLAM_A SINE Alu 1 132 -1 1965 86 90 21 chr11 3177643 3177922 -147605631 + AluSq SINE Alu 1 298 -15 182 105 26 0 chr11 3178373 3178411 -147605142 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 5676 187 70 8 chr11 3178675 3179908 -147603645 + Charlie1a DNA MER1_type 1 1309 -146 1736 149 76 4 chr11 3179965 3180240 -147603313 - AluJo SINE Alu -17 295 1 1724 180 20 10 chr11 3180411 3180706 -147602847 - AluJb SINE Alu -14 298 1 474 263 26 0 chr11 3180807 3180921 -147602632 + L2 LINE L2 3192 3308 -5 216 0 0 0 chr11 3181247 3181271 -147602282 + (TTA)n Simple_repeat Simple_repeat 2 25 0 682 208 21 0 chr11 3182273 3182417 -147601136 - MIR SINE MIR -48 214 68 381 286 43 19 chr11 3182475 3182636 -147600917 - MIR SINE MIR -90 172 8 239 344 43 0 chr11 3182674 3182767 -147600786 + L2 LINE L2 3206 3302 -11 2406 72 3 3 chr11 3182966 3183258 -147600295 - AluSx SINE Alu -19 293 2 245 313 63 46 chr11 3183575 3183726 -147599827 - MIR SINE MIR -78 184 33 234 302 47 35 chr11 3184089 3184175 -147599378 + MIR SINE MIR 37 123 -139 23 0 0 0 chr11 3185089 3185112 -147598441 + AT_rich Low_complexity Low_complexity 1 23 0 3841 143 46 113 chr11 3185113 3185367 -147598186 - L1MB5 LINE L1 -16 6158 5889 2255 101 0 3 chr11 3185367 3185674 -147597879 - AluY SINE Alu -5 306 1 2052 118 40 0 chr11 3185679 3185975 -147597578 - AluSx SINE Alu -4 308 1 3841 143 46 113 chr11 3185975 3186096 -147597457 - L1MB5 LINE L1 -289 5885 5757 2593 65 3 0 chr11 3186096 3186402 -147597151 - AluSp SINE Alu -6 307 1 3841 143 46 113 chr11 3186402 3186541 -147597012 - L1MB5 LINE L1 -417 5757 5610 507 80 13 0 chr11 3186541 3186616 -147596937 + L1PA10 LINE L1 6093 6168 0 3841 143 46 113 chr11 3186616 3187093 -147596460 - L1MB5 LINE L1 -564 5610 5221 503 331 90 53 chr11 3187131 3187347 -147596206 + L2 LINE L2 2899 3135 -137 2348 100 10 0 chr11 3187347 3187656 -147595897 - AluSq SINE Alu -1 312 1 503 331 90 53 chr11 3187656 3187795 -147595758 + L2 LINE L2 3135 3267 -5 499 257 169 8 chr11 3187880 3188117 -147595436 - L2 LINE L2 0 3313 3039 350 289 75 43 chr11 3188144 3188331 -147595222 + MIR SINE MIR 20 212 -50 530 167 0 0 chr11 3188705 3188789 -147594764 + AluSg/x SINE Alu 201 284 -26 2157 151 39 5 chr11 3188789 3189174 -147594379 + L1MB7 LINE L1 5769 6166 -18 1822 149 17 40 chr11 3189187 3189489 -147594064 - AluJb SINE Alu -17 295 1 1617 196 0 11 chr11 3189614 3189941 -147593612 - AluJo SINE Alu 0 324 1 2484 79 0 0 chr11 3190410 3190715 -147592838 + AluY SINE Alu 1 305 -6 2287 91 3 7 chr11 3190725 3191023 -147592530 + AluSc SINE Alu 1 297 -12 2330 93 0 7 chr11 3191690 3191991 -147591562 + AluY SINE Alu 1 299 -12 1925 121 0 54 chr11 3192543 3192856 -147590697 - AluSx SINE Alu -16 296 1 210 59 0 29 chr11 3193103 3193137 -147590416 - MIR SINE MIR -14 248 216 283 238 0 16 chr11 3193307 3193370 -147590183 - MIR SINE MIR -6 256 195 1346 122 0 0 chr11 3193373 3193553 -147590000 - AluSg/x SINE Alu -13 297 118 2292 93 0 3 chr11 3193720 3194011 -147589542 - AluSg SINE Alu -20 290 1 3280 144 69 29 chr11 3194282 3194649 -147588904 - L1PB4 LINE L1 -3 6153 5747 279 0 0 0 chr11 3194649 3194680 -147588873 + (TG)n Simple_repeat Simple_repeat 2 32 0 3280 144 69 29 chr11 3194680 3194965 -147588588 - L1PB4 LINE L1 -409 5747 5475 21 57 0 0 chr11 3195090 3195125 -147588428 + AT_rich Low_complexity Low_complexity 1 35 0 2562 88 3 3 chr11 3195291 3195644 -147587909 - L1PA13 LINE L1 -7 6156 5804 305 179 253 0 chr11 3195646 3195741 -147587812 + Charlie1 DNA MER1_type 2638 2756 -5 263 241 205 9 chr11 3195829 3195941 -147587612 - L2 LINE L2 0 3272 3139 324 333 109 10 chr11 3196205 3196406 -147587147 - MIR SINE MIR -36 226 6 1932 146 7 10 chr11 3196919 3197227 -147586326 - AluJb SINE Alu -5 307 1 1232 204 9 0 chr11 3197291 3197507 -147586046 + MER58A DNA MER1_type 1 218 -6 2190 105 0 3 chr11 3197926 3198247 -147585306 + AluSx SINE Alu 1 320 0 214 290 97 21 chr11 3198377 3198470 -147585083 + MIR SINE MIR 30 129 -79 288 317 120 7 chr11 3198826 3198968 -147584585 - MIR3 SINE MIR -8 200 43 315 327 72 33 chr11 3199332 3199485 -147584068 - L1ME LINE L1 -634 5487 5329 181 337 87 11 chr11 3200239 3200331 -147583222 - L2 LINE L2 -38 3234 3136 416 309 79 26 chr11 3200503 3200768 -147582785 + L3 LINE CR1 894 1172 -405 440 219 57 32 chr11 3200778 3200901 -147582652 - L2 LINE L2 -7 3306 3181 230 196 39 0 chr11 3200901 3200952 -147582601 + L3 LINE CR1 1206 1258 -319 372 262 248 10 chr11 3201019 3201221 -147582332 - MIR SINE MIR -12 250 1 362 281 39 46 chr11 3201234 3201387 -147582166 + L3 LINE CR1 1312 1463 -114 1907 144 11 0 chr11 3201407 3201713 -147581840 + AluJo SINE Alu 3 311 0 667 166 28 108 chr11 3202766 3203049 -147580504 - MER31-int LTR ERV1 -3250 1686 1313 927 126 0 53 chr11 3203296 3203447 -147580106 + FLAM_C SINE Alu 1 143 0 2433 57 0 0 chr11 3203450 3203768 -147579785 + AluY SINE Alu 1 318 0 2135 128 10 0 chr11 3205602 3205899 -147577654 - AluJb SINE Alu -12 300 1 1041 184 0 0 chr11 3205918 3206086 -147577467 - AluJ SINE Alu -14 298 131 21 0 0 0 chr11 3206091 3206112 -147577441 + AT_rich Low_complexity Low_complexity 1 21 0 889 133 0 15 chr11 3206596 3206731 -147576822 + FLAM_C SINE Alu 1 133 0 517 244 16 0 chr11 3207187 3207310 -147576243 - L2 LINE L2 0 3313 3189 202 241 38 25 chr11 3207391 3207470 -147576083 + MIR SINE MIR 113 192 -70 2077 134 3 16 chr11 3207534 3207847 -147575706 + AluSx SINE Alu 1 309 -3 3270 194 37 80 chr11 3207856 3208754 -147574799 + L1ME1 LINE L1 5290 6148 -18 838 148 16 0 chr11 3208868 3208996 -147574557 - AluJ SINE Alu -182 130 1 2117 134 0 0 chr11 3209005 3209297 -147574256 - AluSx SINE Alu -20 292 1 256 333 34 8 chr11 3209327 3209444 -147574109 + L2 LINE L2 3151 3270 -2 722 246 81 21 chr11 3209606 3209842 -147573711 + MIR SINE MIR 3 252 -10 448 309 152 10 chr11 3209859 3210063 -147573490 + MIR SINE MIR 20 252 -10 4703 130 241 44 chr11 3210321 3210337 -147573216 - L1 LINE L1 -761 5385 5373 1702 180 0 44 chr11 3210337 3210654 -147572899 - AluJb SINE Alu -9 303 1 4703 130 241 44 chr11 3210654 3210885 -147572668 - L1 LINE L1 -773 5373 5189 198 0 0 0 chr11 3210885 3210907 -147572646 + (TGG)n Simple_repeat Simple_repeat 1 22 0 4703 130 241 44 chr11 3210907 3210927 -147572626 - L1 LINE L1 -957 5189 5174 1898 124 0 0 chr11 3210927 3211177 -147572376 - AluSx SINE Alu -62 250 1 4703 130 241 44 chr11 3211177 3211801 -147571752 - L1 LINE L1 -972 5174 4674 1934 156 0 13 chr11 3211801 3212115 -147571438 + AluJb SINE Alu 1 310 -2 4703 130 241 44 chr11 3212115 3212409 -147571144 - L1 LINE L1 -1472 4674 3963 1022 261 81 32 chr11 3212417 3212789 -147570764 - MLT1G LTR MaLR -191 399 10 1864 146 14 4 chr11 3212800 3213114 -147570439 + AluSx SINE Alu 1 317 0 220 324 101 14 chr11 3213146 3213294 -147570259 + MIR SINE MIR 84 244 -18 240 300 0 22 chr11 3214002 3214092 -147569461 - L3 LINE CR1 -90 1487 1400 513 335 133 6 chr11 3214219 3214535 -147569018 - L3 LINE CR1 -343 1234 879 432 170 38 28 chr11 3216130 3216236 -147567317 - MIR SINE MIR -10 252 146 1258 296 38 81 chr11 3216239 3216953 -147566600 - MER21B LTR ERV1 -176 687 5 2346 93 0 16 chr11 3217054 3217365 -147566188 - AluSc SINE Alu -1 308 3 652 193 51 57 chr11 3267835 3267877 -147515676 - MER5B DNA MER1_type -2 176 135 1864 152 10 10 chr11 3267877 3268055 -147515498 - AluJb SINE Alu -9 303 123 261 0 0 0 chr11 3268055 3268084 -147515469 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1864 152 10 10 chr11 3268084 3268208 -147515345 - AluJb SINE Alu -188 124 1 652 193 51 57 chr11 3268208 3268341 -147515212 - MER5B DNA MER1_type -43 135 2 2332 98 0 13 chr11 3268550 3268857 -147514696 - AluSx SINE Alu -9 303 1 748 50 0 20 chr11 3268857 3268957 -147514596 - AluY SINE Alu -35 276 179 349 263 46 46 chr11 3269115 3269160 -147514393 + MLT1K LTR MaLR 384 428 -160 1978 155 0 13 chr11 3269160 3269464 -147514089 + AluJb SINE Alu 1 300 -12 349 263 46 46 chr11 3269464 3269593 -147513960 + MLT1K LTR MaLR 427 558 -30 35 0 0 22 chr11 3269738 3269755 -147513798 + AT_rich Low_complexity Low_complexity 1 17 -28 2395 89 0 0 chr11 3269755 3270047 -147513506 + AluSx SINE Alu 1 292 -20 35 0 0 22 chr11 3270047 3270075 -147513478 + AT_rich Low_complexity Low_complexity 17 45 0 23 33 0 0 chr11 3270456 3270486 -147513067 + AT_rich Low_complexity Low_complexity 1 30 0 1221 189 62 72 chr11 3270673 3270785 -147512768 + Tigger3(Golem) DNA MER2_type 2530 2642 -387 2267 102 14 0 chr11 3270785 3271080 -147512473 - AluSq SINE Alu -14 299 1 1221 189 62 72 chr11 3271080 3271189 -147512364 + Tigger3(Golem) DNA MER2_type 2642 2751 -278 2098 135 0 25 chr11 3271189 3271507 -147512046 - AluSx SINE Alu -2 310 1 1221 189 62 72 chr11 3271507 3271685 -147511868 + Tigger3(Golem) DNA MER2_type 2751 2926 -103 1865 99 56 49 chr11 3272443 3272747 -147510806 + AluSx SINE Alu 1 306 -6 667 280 59 57 chr11 3272867 3273239 -147510314 + L2 LINE L2 2941 3313 0 186 364 34 23 chr11 3273310 3273398 -147510155 + L2 LINE L2 3136 3224 -48 207 146 0 0 chr11 3273445 3273486 -147510067 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 2123 110 0 0 chr11 3273633 3273906 -147509647 + AluSx SINE Alu 24 296 -16 282 246 0 0 chr11 3274085 3274142 -147509411 - MER8 DNA MER2_type -2 237 181 2859 117 27 27 chr11 3274157 3274603 -147508950 + Tigger2 DNA MER2_type 2273 2718 0 727 359 23 11 chr11 3274893 3275155 -147508398 + MLT1K LTR MaLR 17 281 -307 180 152 0 0 chr11 3275206 3275239 -147508314 + (TAA)n Simple_repeat Simple_repeat 3 35 0 872 253 21 17 chr11 3275241 3275482 -147508071 - MIR SINE MIR 0 262 21 441 0 0 0 chr11 3275487 3275536 -147508017 + (TG)n Simple_repeat Simple_repeat 2 50 0 2422 113 30 0 chr11 3276842 3277205 -147506348 + THE1C LTR MaLR 2 375 0 22 35 0 0 chr11 3277226 3277255 -147506298 + AT_rich Low_complexity Low_complexity 1 29 0 181 333 49 12 chr11 3277271 3277352 -147506201 + MIR SINE MIR 60 143 -119 2036 143 14 0 chr11 3277526 3277812 -147505741 - AluSx SINE Alu -22 290 1 192 40 0 0 chr11 3278138 3278163 -147505390 + (TA)n Simple_repeat Simple_repeat 1 25 0 298 253 88 60 chr11 3278172 3278354 -147505199 + L1ME4a LINE L1 5917 6103 -18 8558 47 9 0 chr11 3278862 3280690 -147502863 + L1PA5 LINE L1 4300 6154 0 814 171 8 0 chr11 3280731 3280854 -147502699 - FLAM_C SINE Alu -19 124 1 1186 118 49 25 chr11 3280873 3281077 -147502476 + MER3 DNA MER1_type 1 209 0 1521 150 0 0 chr11 3281338 3281551 -147502002 + MER1B DNA MER1_type 1 213 -84 315 209 60 0 chr11 3281655 3281722 -147501831 + MER5B DNA MER1_type 108 178 0 1621 172 0 40 chr11 3281756 3282053 -147501500 - MLT1D LTR MaLR 0 505 221 274 167 91 91 chr11 3282050 3282116 -147501437 - MLT1D LTR MaLR -439 66 1 * 563 287 35 0 chr11 3282536 3282738 -147500815 - LTR33 LTR ERVL -7 514 306 458 281 97 42 chr11 3282786 3283003 -147500550 - LTR33 LTR ERVL -292 229 1 1166 162 15 0 chr11 3283032 3283230 -147500323 + L1MB1 LINE L1 5596 5796 -372 3570 111 4 132 chr11 3283230 3283771 -147499782 + MER4D LTR ERV1 1 427 -445 7775 28 17 0 chr11 3283771 3284763 -147498790 - L1PA3 LINE L1 0 6155 5160 3570 111 4 132 chr11 3284763 3284951 -147498602 + MER4D LTR ERV1 427 637 -235 658 175 0 0 chr11 3285102 3285216 -147498337 + AluSg/x SINE Alu 199 312 0 2013 131 37 6 chr11 3285216 3285544 -147498009 + L1MB1 LINE L1 5803 6140 -28 2261 85 0 7 chr11 3285544 3285827 -147497726 - AluSc SINE Alu -15 294 14 348 176 0 44 chr11 3287016 3287084 -147496469 - MER4D LTR ERV1 -455 417 353 4408 156 47 56 chr11 3287140 3288482 -147495071 + L1MB7 LINE L1 4860 6184 0 294 295 67 40 chr11 3288536 3288760 -147494793 - L2 LINE L2 -945 2369 2140 1019 59 7 13 chr11 3290251 3290403 -147493150 + SVA Other Other 716 866 -520 6611 73 37 43 chr11 3290420 3291594 -147491959 + SVA Other Other 432 1383 -3 198 0 0 0 chr11 3291608 3291630 -147491923 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 622 158 103 91 chr11 3291630 3291839 -147491714 + AluSg/x SINE Alu 121 331 0 1964 151 7 0 chr11 3291846 3292130 -147491423 + AluSx SINE Alu 1 286 -26 197 143 29 0 chr11 3292469 3292504 -147491049 + L2 LINE L2 3262 3297 -16 510 230 46 75 chr11 3294034 3294094 -147489459 - MER5B DNA MER1_type -8 170 110 2193 89 52 0 chr11 3294094 3294385 -147489168 + AluSx SINE Alu 1 306 -6 510 230 46 75 chr11 3294385 3294498 -147489055 - MER5B DNA MER1_type -68 110 2 1236 208 0 21 chr11 3295172 3295412 -147488141 - AluJo SINE Alu -77 235 1 247 309 15 0 chr11 3296035 3296103 -147487450 + L2 LINE L2 3231 3299 -14 619 239 46 10 chr11 3296172 3296369 -147487184 + L1MEc LINE L1 1972 2175 -4221 195 42 0 0 chr11 3296549 3296573 -147486980 + (CA)n Simple_repeat Simple_repeat 1 24 0 2436 89 0 19 chr11 3296895 3297208 -147486345 + AluSx SINE Alu 1 307 -5 252 267 9 57 chr11 3297607 3297712 -147485841 + MIR SINE MIR 58 157 -105 876 206 85 45 chr11 3297721 3297849 -147485704 - MER2 DNA MER2_type -4 341 220 2532 57 0 0 chr11 3297849 3298146 -147485407 + AluY SINE Alu 1 297 -14 876 206 85 45 chr11 3298146 3298264 -147485289 - MER2 DNA MER2_type -125 220 85 4282 124 53 49 chr11 3298269 3298929 -147484624 - L1MA5A LINE L1 -4 6293 5628 1963 156 0 16 chr11 3298929 3299243 -147484310 - AluJo SINE Alu -3 309 1 4282 124 53 49 chr11 3299243 3299375 -147484178 - L1MA5A LINE L1 -669 5628 5498 2285 106 6 6 chr11 3301038 3301350 -147482203 + AluSx SINE Alu 1 312 0 16668 177 66 37 chr11 3301402 3303565 -147479988 - ERVL LTR ERVL -1994 3770 1472 2311 115 0 0 chr11 3303565 3303861 -147479692 - AluSx SINE Alu -16 296 1 16668 177 66 37 chr11 3303861 3305063 -147478490 - ERVL LTR ERVL -4292 1472 307 282 270 56 0 chr11 3305092 3305181 -147478372 + L1M4 LINE L1 842 935 -5607 1756 191 3 3 chr11 3305183 3305492 -147478061 + AluSx SINE Alu 1 309 -3 1735 199 57 14 chr11 3305493 3305981 -147477572 + L1M4 LINE L1 1094 1602 -4940 2091 109 0 4 chr11 3306083 3306358 -147477195 - AluSx SINE Alu -38 274 1 253 217 0 0 chr11 3306494 3306540 -147477013 - L2 LINE L2 -15 3257 3212 208 274 158 18 chr11 3307511 3307675 -147475878 + L2 LINE L2 3127 3313 0 526 267 11 59 chr11 3307738 3307894 -147475659 - MIR SINE MIR -80 182 35 1574 170 60 3 chr11 3307894 3308177 -147475376 - AluJo SINE Alu -13 299 1 526 267 11 59 chr11 3308177 3308207 -147475346 - MIR SINE MIR -227 35 5 1059 235 71 18 chr11 3308507 3308847 -147474706 + L2 LINE L2 2944 3301 -12 199 318 63 0 chr11 3309148 3309211 -147474342 - MIR SINE MIR -46 216 150 * 297 232 134 36 chr11 3309208 3309320 -147474233 + L2 LINE L2 3191 3313 0 295 266 128 9 chr11 3309320 3309429 -147474124 - MIR SINE MIR -66 142 21 340 222 136 25 chr11 3309861 3310023 -147473530 + Charlie7 DNA MER1_type 2427 2606 -6 2441 84 3 0 chr11 3310024 3310320 -147473233 + AluSc SINE Alu 1 297 -12 872 203 122 10 chr11 3311119 3311316 -147472237 + MER20 DNA MER1_type 1 219 0 1667 187 3 10 chr11 3311743 3312037 -147471516 - AluJb SINE Alu -16 296 5 2314 87 0 13 chr11 3312049 3312349 -147471204 - AluSx SINE Alu -6 306 11 1209 94 12 0 chr11 3312349 3312509 -147471044 - AluSg/x SINE Alu -5 307 146 1914 163 3 13 chr11 3312929 3313242 -147470311 - AluJo SINE Alu -2 310 1 593 194 0 0 chr11 3313489 3313597 -147469956 + FLAM_C SINE Alu 3 110 -33 2680 126 12 7 chr11 3313697 3314103 -147469450 - L1PA15 LINE L1 -267 5898 5488 1669 144 88 11 chr11 3314103 3314388 -147469165 - AluJo SINE Alu -5 307 1 331 335 33 42 chr11 3314503 3314718 -147468835 - L1M4 LINE L1 -2574 3572 3360 345 340 205 0 chr11 3315717 3315932 -147467621 - L2 LINE L2 0 3272 3014 331 257 108 12 chr11 3316980 3317129 -147466424 - MIR3 SINE MIR -63 145 3 796 231 74 10 chr11 3317872 3318075 -147465478 - MLT1C LTR MaLR 0 467 252 611 263 58 26 chr11 3318103 3318293 -147465260 - MLT1C LTR MaLR -309 196 1 183 287 69 30 chr11 3319337 3319438 -147464115 + L2 LINE L2 2949 3053 -219 28 0 0 0 chr11 3319920 3319948 -147463605 + AT_rich Low_complexity Low_complexity 1 28 0 2120 132 0 0 chr11 3319951 3320239 -147463314 + AluSx SINE Alu 1 288 -24 1289 131 62 4 chr11 3320242 3320486 -147463067 - L1MA4A LINE L1 -3 6300 6043 189 254 79 0 chr11 3321784 3321847 -147461706 - MIR3 SINE MIR -31 177 110 533 224 209 25 chr11 3322001 3322197 -147461356 + MIR SINE MIR 27 258 -4 402 257 58 134 chr11 3322216 3322477 -147461076 - L2 LINE L2 -2 3270 3030 358 322 115 0 chr11 3322498 3322681 -147460872 - MIR SINE MIR -39 223 20 624 208 76 0 chr11 3322829 3322973 -147460580 + MIR SINE MIR 2 156 -106 183 299 91 0 chr11 3322968 3323045 -147460508 - MIR SINE MIR -1 261 178 * 548 202 171 0 chr11 3323048 3323177 -147460376 + MIR SINE MIR 112 262 0 414 206 97 45 chr11 3323429 3323584 -147459969 + MER103 DNA DNA 2 164 -2 836 143 8 15 chr11 3323641 3323774 -147459779 + FLAM_C SINE Alu 2 133 -10 480 247 95 47 chr11 3323801 3323991 -147459562 + MIR SINE MIR 63 261 -1 200 277 92 0 chr11 3323979 3324044 -147459509 - MIR SINE MIR -66 196 126 * 189 74 0 0 chr11 3324460 3324487 -147459066 + (CGG)n Simple_repeat Simple_repeat 3 29 0 885 119 24 54 chr11 3325533 3325701 -147457852 - MLT1A2 LTR MaLR -208 166 4 252 301 75 11 chr11 3326734 3326827 -147456726 + MIR3 SINE MIR 12 110 -98 1114 222 15 11 chr11 3329299 3329569 -147453984 - L1ME1 LINE L1 -5 6161 5891 726 230 125 30 chr11 3330036 3330264 -147453289 - MIR SINE MIR -2 260 16 539 231 66 16 chr11 3330571 3330692 -147452861 - L2 LINE L2 0 3272 3146 513 264 129 11 chr11 3330945 3331123 -147452430 - MIR SINE MIR -51 211 13 289 347 50 8 chr11 3331182 3331303 -147452250 - L2 LINE L2 -5 3267 3142 752 247 36 46 chr11 3331661 3331763 -147451790 + MIR SINE MIR 40 141 -121 2508 56 0 0 chr11 3331763 3332065 -147451488 + AluY SINE Alu 1 302 -9 752 247 36 46 chr11 3332065 3332181 -147451372 + MIR SINE MIR 141 256 -6 322 294 52 59 chr11 3332341 3332477 -147451076 - MIR3 SINE MIR -40 168 34 268 413 0 14 chr11 3333903 3334041 -147449512 - L2 LINE L2 -218 3054 2919 205 182 23 0 chr11 3334837 3334881 -147448672 - L2 LINE L2 -1 3271 3227 235 303 61 0 chr11 3335043 3335109 -147448444 - L2 LINE L2 -215 3057 2988 3626 173 25 23 chr11 3335618 3336345 -147447208 + L1MB5 LINE L1 5447 6174 0 2292 164 92 31 chr11 3336345 3336515 -147447038 + L1MB7 LINE L1 5110 5268 -916 1987 137 0 7 chr11 3336515 3336821 -147446732 + AluSx SINE Alu 2 305 -7 2292 164 92 31 chr11 3336821 3337470 -147446083 + L1MB7 LINE L1 5268 6167 -17 907 139 7 13 chr11 3337480 3337631 -147445922 + Tigger1 DNA MER2_type 1 150 -2268 1340 124 14 5 chr11 3337634 3337843 -147445710 + Tigger1 DNA MER2_type 2208 2418 0 351 234 175 0 chr11 3337917 3338054 -147445499 + MIR3 SINE MIR 41 201 -7 207 285 118 4 chr11 3338148 3338262 -147445291 + MIR SINE MIR 65 192 -16 327 243 0 0 chr11 3339159 3339229 -147444324 + MIR SINE MIR 61 130 -132 320 303 34 25 chr11 3340609 3340728 -147442825 - L2 LINE L2 -20 3252 3133 825 145 23 8 chr11 3340742 3340873 -147442680 + FLAM_C SINE Alu 1 133 0 181 384 36 27 chr11 3341168 3341280 -147442273 + L2 LINE L2 2224 2336 -978 328 270 120 0 chr11 3341352 3341452 -147442101 - MIR SINE MIR -65 143 32 355 271 47 0 chr11 3341806 3341913 -147441640 + MIR SINE MIR 95 206 -56 484 316 199 3 chr11 3342108 3342390 -147441163 + L3 LINE CR1 342 678 -899 391 275 14 84 chr11 3344817 3344959 -147438594 + MIR3 SINE MIR 72 203 -5 187 303 0 30 chr11 3345439 3345505 -147438048 - L2 LINE L2 -665 2649 2586 180 0 0 0 chr11 3345524 3345544 -147438009 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1528 147 45 4 chr11 3345552 3345817 -147437736 - AluJo SINE Alu -36 276 1 307 270 141 38 chr11 3345872 3346057 -147437496 - MIR SINE MIR -25 237 34 198 0 0 0 chr11 3347226 3347248 -147436305 + (T)n Simple_repeat Simple_repeat 1 22 0 411 244 122 28 chr11 3347609 3347789 -147435764 + L2 LINE L2 3117 3313 0 2248 108 0 9 chr11 3349034 3349350 -147434203 + AluSq SINE Alu 1 313 0 2877 216 105 29 chr11 3349424 3350382 -147433171 - L1ME3 LINE L1 -2 6955 5894 1881 157 0 3 chr11 3350382 3350695 -147432858 + AluSx SINE Alu 1 312 0 2877 216 105 29 chr11 3350695 3350846 -147432707 - L1ME3 LINE L1 -1063 5894 5756 632 270 19 5 chr11 3350907 3351118 -147432435 - L1ME3 LINE L1 -3195 3746 3533 621 248 63 46 chr11 3351129 3351769 -147431784 + L1MEc LINE L1 2160 2694 -3452 * 821 260 99 40 chr11 3351763 3352296 -147431257 - L1ME3 LINE L1 -4887 1536 1279 1867 151 3 0 chr11 3352853 3353151 -147430402 - AluJo SINE Alu -13 299 1 417 310 89 47 chr11 3353874 3354087 -147429466 - L3 LINE CR1 0 1577 1356 332 263 58 12 chr11 3354075 3354190 -147429363 - MIR3 SINE MIR -111 97 1 * 226 296 102 0 chr11 3354353 3354451 -147429102 + MIR SINE MIR 57 164 -98 202 291 0 35 chr11 3354746 3354832 -147428721 + CT-rich Low_complexity Low_complexity 1 83 0 252 278 10 41 chr11 3355055 3355152 -147428401 + CT-rich Low_complexity Low_complexity 5 98 0 200 284 0 40 chr11 3357484 3357558 -147425995 + CT-rich Low_complexity Low_complexity 2 72 0 258 304 189 20 chr11 3358043 3358244 -147425309 - MIR SINE MIR -23 239 5 304 318 93 9 chr11 3358409 3358516 -147425037 - L1ME LINE L1 -370 5751 5636 333 100 0 0 chr11 3359074 3359124 -147424429 + (CCA)n Simple_repeat Simple_repeat 2 51 0 503 308 175 45 chr11 3359546 3360133 -147423420 - L2 LINE L2 -1 3271 2585 210 267 17 0 chr11 3360172 3360232 -147423321 - L2 LINE L2 -829 2485 2425 321 321 46 0 chr11 3360310 3360441 -147423112 - MIR SINE MIR -65 143 30 1695 134 52 14 chr11 3361334 3361625 -147421928 + AluJb SINE Alu 1 302 -10 303 296 91 61 chr11 3362573 3362705 -147420848 - MIR SINE MIR -46 216 81 244 313 6 47 chr11 3363279 3363613 -147419940 + CT-rich Low_complexity Low_complexity 1 320 0 483 173 67 0 chr11 3365713 3365817 -147417736 - MER53 DNA DNA 0 189 79 2052 116 0 0 chr11 3365907 3366209 -147417344 - AluSg SINE Alu -2 308 7 698 155 9 0 chr11 3366213 3366329 -147417224 - AluJo SINE Alu -175 137 21 214 205 179 0 chr11 3367696 3367774 -147415779 - MIR SINE MIR -51 211 120 189 262 143 12 chr11 3368101 3368185 -147415368 - L2 LINE L2 -9 3263 3169 1467 181 0 11 chr11 3368395 3368666 -147414887 - AluJo SINE Alu -24 288 21 22 56 0 0 chr11 3368994 3369030 -147414523 + AT_rich Low_complexity Low_complexity 1 36 0 822 106 8 15 chr11 3369030 3369162 -147414391 - FLAM_C SINE Alu -12 131 1 2040 117 23 3 chr11 3369359 3369658 -147413895 + AluSx SINE Alu 1 305 -7 21 82 0 0 chr11 3369815 3369864 -147413689 + AT_rich Low_complexity Low_complexity 1 49 0 1104 157 0 5 chr11 3369947 3370132 -147413421 - AluSg/x SINE Alu -12 300 117 840 181 0 0 chr11 3370625 3370796 -147412757 + CT-rich Low_complexity Low_complexity 4 174 0 277 345 48 21 chr11 3370828 3370973 -147412580 - L2 LINE L2 -34 3279 3131 824 277 59 57 chr11 3370998 3371370 -147412183 - L2 LINE L2 0 3313 2941 1843 104 49 46 chr11 3371490 3371797 -147411756 - AluSx SINE Alu -4 308 1 202 280 133 0 chr11 3372567 3372642 -147410911 - L2 LINE L2 0 3272 3188 1553 140 0 4 chr11 3372690 3372926 -147410627 - MER46A DNA MER2_type 0 236 2 216 250 0 0 chr11 3372982 3373022 -147410531 - MIR SINE MIR -7 255 216 361 257 12 70 chr11 3373390 3373561 -147409992 - L2 LINE L2 -151 3162 3002 380 299 39 74 chr11 3373563 3373670 -147409883 - L2 LINE L2 -415 2899 2790 2132 110 0 42 chr11 3373670 3373980 -147409573 - AluSq SINE Alu -16 297 1 380 299 39 74 chr11 3373980 3374103 -147409450 - L2 LINE L2 -524 2790 2677 2447 55 20 0 chr11 3374731 3375023 -147408530 + AluSx SINE Alu 1 298 -14 375 276 178 18 chr11 3375684 3375847 -147407706 - MIR3 SINE MIR -6 202 14 685 135 31 0 chr11 3375924 3376020 -147407533 + AluJb SINE Alu 10 108 -204 1402 128 52 52 chr11 3376021 3376271 -147407282 - AluSx SINE Alu -51 261 12 984 178 35 41 chr11 3376286 3376483 -147407070 + AluJb SINE Alu 106 301 -11 330 214 101 11 chr11 3376953 3377042 -147406511 + MIR SINE MIR 84 180 -82 1562 191 0 20 chr11 3377589 3377887 -147405666 - AluJo SINE Alu -20 292 1 1504 142 108 54 chr11 3377925 3378221 -147405332 - AluJo SINE Alu 0 312 1 436 265 12 0 chr11 3378236 3378319 -147405234 - FLAM_A SINE Alu -58 84 1 773 170 7 50 chr11 3378674 3378815 -147404738 + AluJb SINE Alu 2 136 -176 825 114 44 38 chr11 3378932 3379090 -147404463 - AluY SINE Alu -152 159 1 192 160 40 80 chr11 3379168 3379218 -147404335 - L2 LINE L2 -4 3309 3262 557 295 67 51 chr11 3379566 3380051 -147403502 - L1MC4a LINE L1 -462 5704 5532 2494 72 0 0 chr11 3380215 3380520 -147403033 + AluY SINE Alu 1 305 -6 28 29 0 0 chr11 3381103 3381138 -147402415 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr11 3381490 3381519 -147402034 + AT_rich Low_complexity Low_complexity 1 29 0 415 269 169 8 chr11 3381895 3382025 -147401528 + MIR SINE MIR 1 151 -111 540 157 0 0 chr11 3382059 3382148 -147401405 - AluSg/x SINE Alu -20 290 202 441 56 0 0 chr11 3382202 3382256 -147401297 + Alu SINE Alu 246 299 -10 224 229 84 36 chr11 3382270 3382353 -147401200 - MIR SINE MIR -36 226 140 213 308 0 39 chr11 3382347 3382451 -147401102 + MIR SINE MIR 162 261 -1 * 529 157 0 12 chr11 3382556 3382639 -147400914 + FLAM SINE Alu 42 123 -20 1675 79 0 19 chr11 3382678 3382894 -147400659 + AluY SINE Alu 85 296 -15 586 135 32 128 chr11 3383711 3383832 -147399721 + L1MB8 LINE L1 6044 6148 -36 1998 128 7 10 chr11 3383832 3384128 -147399425 - AluSx SINE Alu -15 297 3 586 135 32 128 chr11 3384128 3384162 -147399391 + L1MB8 LINE L1 6148 6184 0 233 413 9 0 chr11 3384163 3384272 -147399281 - L2 LINE L2 -661 2653 2544 798 250 0 6 chr11 3384287 3384443 -147399110 + FRAM SINE Alu 1 155 -21 270 271 28 28 chr11 3384575 3384682 -147398871 + L1ME4a LINE L1 3765 3871 -2275 535 298 88 0 chr11 3384798 3385013 -147398540 + L1ME4a LINE L1 4111 4344 -1802 2242 148 29 18 chr11 3385038 3385312 -147398241 - Tigger3(Golem) DNA MER2_type 0 3028 2747 2187 116 0 25 chr11 3385312 3385630 -147397923 + AluSx SINE Alu 1 310 -2 2242 148 29 18 chr11 3385630 3385739 -147397814 - Tigger3(Golem) DNA MER2_type -281 2747 2641 646 231 15 0 chr11 3385740 3385870 -147397683 + FLAM_A SINE Alu 1 132 -1 416 105 35 0 chr11 3385870 3385927 -147397626 + AluSq SINE Alu 134 192 -121 1872 153 0 7 chr11 3386283 3386570 -147396983 - AluSx SINE Alu -25 287 3 317 231 240 8 chr11 3386593 3386714 -147396839 + L1ME4a LINE L1 4461 4609 -1537 917 227 135 40 chr11 3386734 3387064 -147396489 + MLT1D LTR MaLR 1 363 -142 2293 92 0 0 chr11 3387124 3387416 -147396137 - AluSq SINE Alu -21 292 1 1882 129 4 11 chr11 3387903 3388182 -147395371 + AluSx SINE Alu 35 311 -1 1072 285 111 14 chr11 3388234 3388247 -147395306 + L1ME4a LINE L1 5291 5301 -820 1813 175 13 0 chr11 3388247 3388555 -147394998 + AluJo SINE Alu 1 312 0 1072 285 111 14 chr11 3388555 3389173 -147394380 + L1ME4a LINE L1 5301 5999 -122 193 311 39 19 chr11 3389321 3389424 -147394129 - L2 LINE L2 -1680 1634 1530 415 318 81 29 chr11 3390084 3390257 -147393296 + MIR3 SINE MIR 20 201 -7 389 230 50 0 chr11 3390288 3390388 -147393165 - MIR SINE MIR -12 250 146 425 273 62 8 chr11 3390405 3390533 -147393020 - MIR SINE MIR -74 188 54 321 296 35 52 chr11 3390592 3390707 -147392846 + MIR SINE MIR 34 146 -62 745 163 25 156 chr11 3391613 3391889 -147391664 - L1ME2 LINE L1 -11 6155 5916 1636 177 27 10 chr11 3391926 3392225 -147391328 - AluJo SINE Alu -8 304 1 1564 186 0 43 chr11 3392283 3392606 -147390947 + AluJb SINE Alu 1 309 -3 2305 125 0 0 chr11 3394150 3394454 -147389099 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr11 3394707 3394729 -147388824 + AT_rich Low_complexity Low_complexity 1 22 0 699 168 0 0 chr11 3395283 3395396 -147388157 + AluJb SINE Alu 199 311 -1 334 300 0 0 chr11 3396159 3396249 -147387304 + L2 LINE L2 2679 2768 -546 231 189 189 68 chr11 3396250 3396324 -147387229 - AluJb SINE Alu -7 295 213 1551 119 33 116 chr11 3396351 3396466 -147387087 - L1MB7 LINE L1 -42 6142 6019 2509 76 0 0 chr11 3396466 3396769 -147386784 - AluSc SINE Alu -4 305 3 1551 119 33 116 chr11 3396769 3397014 -147386539 - L1MB7 LINE L1 -165 6019 5812 773 270 54 32 chr11 3397014 3397376 -147386177 + L2 LINE L2 2776 3138 -175 220 328 121 17 chr11 3397547 3397663 -147385890 - L2 LINE L2 -4 3268 3141 546 117 182 2 chr11 3397766 3397904 -147385649 + MER3 DNA MER1_type 15 208 -1 25 0 0 0 chr11 3398127 3398152 -147385401 + AT_rich Low_complexity Low_complexity 1 25 0 1185 240 100 43 chr11 3398859 3399300 -147384253 + MLT1C LTR MaLR 1 466 -1 769 216 115 16 chr11 3399402 3399705 -147383848 - MLT1E1 LTR MaLR -44 610 210 818 156 8 8 chr11 3399725 3399853 -147383700 - AluSx SINE Alu -12 300 173 921 124 0 0 chr11 3399853 3399974 -147383579 - AluSx SINE Alu -191 122 2 971 190 82 0 chr11 3399975 3400170 -147383383 - MLT1E1 LTR MaLR -437 217 7 188 271 50 86 chr11 3400810 3400950 -147382603 + MIR SINE MIR 128 262 0 313 253 88 60 chr11 3401435 3401617 -147381936 - L1ME4a LINE L1 -18 6103 5917 192 40 0 0 chr11 3401625 3401650 -147381903 + (TA)n Simple_repeat Simple_repeat 1 25 0 2023 143 14 0 chr11 3401977 3402263 -147381290 + AluSx SINE Alu 1 290 -22 206 338 62 12 chr11 3402437 3402517 -147381036 - MIR SINE MIR -119 143 60 22 35 0 0 chr11 3402533 3402562 -147380991 + AT_rich Low_complexity Low_complexity 1 29 0 2396 129 30 3 chr11 3402583 3402947 -147380606 - THE1C LTR MaLR 0 375 2 185 195 0 24 chr11 3403642 3403683 -147379870 + L2 LINE L2 3274 3313 0 306 230 0 48 chr11 3403826 3403940 -147379613 + MER5B DNA MER1_type 1 174 -4 514 178 9 19 chr11 3404112 3404219 -147379334 - L1MA9 LINE L1 0 6312 6207 1112 113 0 19 chr11 3404245 3404404 -147379149 - AluSg/x SINE Alu -25 287 132 563 253 29 58 chr11 3404923 3405036 -147378517 + MER5B DNA MER1_type 2 110 -68 2171 89 52 0 chr11 3405036 3405327 -147378226 - AluSx SINE Alu -6 306 1 563 253 29 58 chr11 3405327 3405387 -147378166 + MER5B DNA MER1_type 110 170 -8 191 305 34 0 chr11 3406744 3406803 -147376750 + L2 LINE L2 2718 2778 -536 241 283 181 65 chr11 3406916 3407054 -147376499 - L2 LINE L2 -16 3256 3103 1945 151 7 0 chr11 3407290 3407574 -147375979 - AluSx SINE Alu -26 286 1 986 59 7 13 chr11 3407683 3407835 -147375718 - SVA Other Other -520 866 716 3299 154 75 6 chr11 3408714 3409059 -147374494 - L1MB4 LINE L1 -8 6172 5852 1703 151 37 40 chr11 3409059 3409358 -147374195 - AluSx SINE Alu -12 300 3 3299 154 75 6 chr11 3409358 3409655 -147373898 - L1MB4 LINE L1 -328 5852 5486 814 166 36 67 chr11 3409660 3409853 -147373700 - AluJo SINE Alu -9 303 117 2695 191 66 40 chr11 3409872 3410643 -147372910 - L1M4c LINE L1 -4839 1703 929 1706 186 3 3 chr11 3410643 3410938 -147372615 - AluSx SINE Alu -17 295 1 2695 191 66 40 chr11 3410938 3411029 -147372524 - L1M4c LINE L1 -5613 929 842 388 218 0 0 chr11 3411058 3411136 -147372417 + ERVL LTR ERVL 307 384 -5380 3470 149 21 21 chr11 3411237 3411888 -147371665 - L1MA4A LINE L1 -348 7017 6367 * 43970 32 21 2 chr11 3411882 3417906 -147365647 - L1PA3 LINE L1 -10 6145 2 4300 196 16 22 chr11 3417907 3418688 -147364865 - L1MA4A LINE L1 -815 6393 5618 2246 104 13 13 chr11 3418688 3418997 -147364556 - AluSx SINE Alu -3 309 1 4300 196 16 22 chr11 3418997 3419158 -147364395 - L1MA4A LINE L1 -1590 5618 5457 402 173 0 0 chr11 3419167 3419242 -147364311 - L1MA5A LINE L1 0 6297 6223 4684 196 24 8 chr11 3419247 3419788 -147363765 - L1MA4A LINE L1 -3024 4184 3618 1548 118 50 5 chr11 3419788 3420008 -147363545 + MER30 DNA MER1_type 1 230 0 4684 196 24 8 chr11 3420008 3420483 -147363070 - L1MA4A LINE L1 -3590 3618 3152 1948 211 95 24 chr11 3420480 3421176 -147362377 - L1MA4A LINE L1 -5737 1472 741 * 188 311 242 0 chr11 3421428 3421560 -147361993 + MIR3 SINE MIR 16 179 -29 309 269 190 5 chr11 3421616 3421774 -147361779 - MIR SINE MIR -50 212 34 1896 156 73 43 chr11 3422035 3422406 -147361147 + MSTD LTR MaLR 6 387 -9 513 275 53 5 chr11 3422919 3423108 -147360445 - MIR SINE MIR -12 250 53 295 258 126 4 chr11 3424082 3424212 -147359341 + MIR SINE MIR 33 145 -63 220 178 44 0 chr11 3424223 3424268 -147359285 - L2 LINE L2 0 3313 3267 238 326 0 20 chr11 3424297 3424395 -147359158 + MIR SINE MIR 162 257 -5 * 542 263 134 18 chr11 3424327 3424544 -147359009 - MIR SINE MIR 0 262 21 234 0 0 0 chr11 3425084 3425110 -147358443 + (GGGAGA)n Simple_repeat Simple_repeat 6 31 0 1256 120 0 22 chr11 3425115 3425298 -147358255 - AluSg/x SINE Alu -12 300 122 226 275 0 33 chr11 3425430 3425521 -147358032 - MLT1H LTR MaLR -378 171 84 569 274 59 0 chr11 3425590 3425743 -147357810 + L1MC/D LINE L1 5453 5614 -2194 988 180 5 37 chr11 3425754 3425943 -147357610 - AluJo SINE Alu -129 183 1 1146 239 53 67 chr11 3425999 3426723 -147356830 + L1MC3 LINE L1 1421 7459 -720 264 273 10 30 chr11 3426729 3426828 -147356725 + MLT1F1 LTR MaLR 15 111 -456 227 214 36 0 chr11 3426830 3426886 -147356667 + L1MC3 LINE L1 7571 7628 -551 338 293 70 37 chr11 3427079 3427352 -147356201 + MER65A LTR ERV1 161 442 -3 29 0 0 0 chr11 3427916 3427945 -147355608 + AT_rich Low_complexity Low_complexity 1 29 0 341 303 26 62 chr11 3427996 3428191 -147355362 + MIR SINE MIR 68 255 -7 631 260 99 55 chr11 3429332 3429748 -147353805 + MER20B DNA MER1_type 184 617 -166 694 99 0 0 chr11 3429983 3430084 -147353469 + MER6 DNA MER2_type 576 676 -189 4611 163 77 7 chr11 3430197 3430220 -147353333 + MER6 DNA MER2_type 1 21 -844 1860 170 0 10 chr11 3430220 3430526 -147353027 - AluJb SINE Alu -9 303 1 4611 163 77 7 chr11 3430526 3431311 -147352242 + MER6 DNA MER2_type 21 865 0 544 225 131 25 chr11 3431341 3431501 -147352052 + MER5A DNA MER1_type 7 183 -6 193 283 0 0 chr11 3431517 3431563 -147351990 + MER5B DNA MER1_type 7 52 -126 402 286 0 36 chr11 3432431 3432543 -147351010 + MER5B DNA MER1_type 1 108 -70 303 296 64 55 chr11 3433256 3433476 -147350077 - HAL1b LINE L1 -825 523 302 742 215 99 40 chr11 3433499 3433722 -147349831 - MER106A DNA MER1_type 0 236 1 2564 191 52 93 chr11 3434187 3434943 -147348610 + MER50 LTR ERV1 10 734 0 1253 218 41 36 chr11 3435240 3435602 -147347951 - L1ME LINE L1 -505 5659 5296 354 319 85 14 chr11 3435710 3435851 -147347702 + L2 LINE L2 3111 3261 -11 1391 180 48 0 chr11 3436121 3436371 -147347182 - AluJo SINE Alu -14 298 37 271 306 51 0 chr11 3436510 3436608 -147346945 - L2 LINE L2 -632 2682 2580 3141 87 27 22 chr11 3436926 3437372 -147346181 + LTR7 LTR ERV1 1 448 -2 9268 184 64 51 chr11 3437375 3441279 -147342274 + HERVH LTR ERV1 1 3993 -3720 3113 124 0 2 chr11 3441282 3441896 -147341657 + HERVH LTR ERV1 4489 5149 -2564 1415 99 20 0 chr11 3441931 3442132 -147341421 + HERVH LTR ERV1 5615 5819 -1894 2334 95 68 14 chr11 3442132 3442502 -147341051 + HERVH LTR ERV1 7324 7713 0 3098 90 29 22 chr11 3442502 3442947 -147340606 + LTR7 LTR ERV1 1 448 -2 2137 82 7 0 chr11 3443737 3444007 -147339546 - L1PA6 LINE L1 -4 6150 5879 189 368 9 19 chr11 3444661 3444767 -147338786 - L2 LINE L2 -1024 2290 2186 2345 83 0 0 chr11 3445577 3445866 -147337687 + AluSx SINE Alu 1 289 -23 408 321 108 51 chr11 3446240 3446573 -147336980 - L2 LINE L2 -5 3267 2916 325 358 142 11 chr11 3446612 3446886 -147336667 - L2 LINE L2 -452 2862 2553 405 0 0 0 chr11 3447415 3447460 -147336093 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 70 0 0 chr11 3449018 3449061 -147334492 + AT_rich Low_complexity Low_complexity 1 43 0 716 159 38 30 chr11 3449386 3449518 -147334035 + AluJb SINE Alu 2 134 -178 185 211 42 84 chr11 3449797 3449868 -147333685 + MIR SINE MIR 18 85 -123 205 180 16 33 chr11 3451118 3451179 -147332374 + A-rich Low_complexity Low_complexity 5 64 0 327 25 0 0 chr11 3453153 3453193 -147330360 + (TG)n Simple_repeat Simple_repeat 1 40 0 195 42 0 0 chr11 3454308 3454332 -147329221 + (A)n Simple_repeat Simple_repeat 1 24 0 2291 81 0 60 chr11 3454825 3455157 -147328396 - AluSx SINE Alu 0 312 1 301 278 131 34 chr11 3455896 3456072 -147327481 - MIR SINE MIR -51 211 19 1787 75 13 0 chr11 3456435 3456662 -147326891 - AluSq SINE Alu -10 303 74 2140 88 35 7 chr11 3456895 3457178 -147326375 - AluY SINE Alu -20 291 1 307 357 27 37 chr11 3458555 3459039 -147324514 + L1MC4 LINE L1 5378 5856 -265 2010 305 88 28 chr11 3459693 3460632 -147322921 - MER110-int LTR ERV1 -1683 2964 1969 2395 131 11 3 chr11 3460638 3460996 -147322557 + L1PA13 LINE L1 5798 6158 -5 4348 155 33 1 chr11 3461422 3462767 -147320786 + L1PB1 LINE L1 4400 5792 -359 186 125 0 54 chr11 3462767 3462823 -147320730 + (TA)n Simple_repeat Simple_repeat 2 54 0 2422 119 28 0 chr11 3462823 3463176 -147320377 + L1PB1 LINE L1 5782 6144 -7 24 0 0 0 chr11 3463186 3463210 -147320343 + AT_rich Low_complexity Low_complexity 1 24 0 68 42 0 0 chr11 3463926 3464022 -147319531 + AT_rich Low_complexity Low_complexity 1 96 0 2260 107 0 0 chr11 3464039 3464338 -147319215 + AluSx SINE Alu 1 299 -13 3164 231 32 14 chr11 3464398 3465179 -147318374 + L1MC4a LINE L1 5255 6049 -1759 6310 205 55 59 chr11 3465723 3466279 -147317274 + L1MC4 LINE L1 6041 6598 -1444 207 100 0 0 chr11 3466279 3466309 -147317244 + (TAGG)n Simple_repeat Simple_repeat 2 31 0 6310 205 55 59 chr11 3466309 3466738 -147316815 + L1MC4 LINE L1 6598 7027 -1015 543 101 0 0 chr11 3466738 3466817 -147316736 + (TGGA)n Simple_repeat Simple_repeat 3 81 0 6310 205 55 59 chr11 3466817 3467742 -147315811 + L1MC4 LINE L1 7027 8041 -1 445 165 156 55 chr11 3468403 3468512 -147315041 + FRAM SINE Alu 46 165 -11 2257 103 3 0 chr11 3470579 3470870 -147312683 - AluSg SINE Alu -18 292 1 793 223 78 18 chr11 3470872 3471038 -147312515 - AluJo SINE Alu -17 295 120 887 227 38 55 chr11 3471469 3471707 -147311846 + L1MEc LINE L1 37 270 -6126 * 1552 205 79 79 chr11 3471703 3471746 -147311807 + L1MEc LINE L1 1942 1984 -4231 377 104 117 13 chr11 3471746 3471823 -147311730 - L1PA4 LINE L1 0 6155 6071 1552 205 79 79 chr11 3471823 3471842 -147311711 + L1MEc LINE L1 1984 2002 -4213 2090 145 0 0 chr11 3471842 3472138 -147311415 + AluSx SINE Alu 1 296 -16 1552 205 79 79 chr11 3472138 3472826 -147310727 + L1MEc LINE L1 2002 2659 -3556 2190 128 16 0 chr11 3472826 3473132 -147310421 + AluSx SINE Alu 1 311 -1 1552 205 79 79 chr11 3473132 3473150 -147310403 + L1MEc LINE L1 2659 2676 -3539 938 155 31 0 chr11 3473214 3473375 -147310178 - L1PA11 LINE L1 -921 5225 5060 6687 93 23 1 chr11 3473375 3474322 -147309231 + L1PA11 LINE L1 5208 6174 0 1086 226 62 21 chr11 3474325 3474661 -147308892 + L1MEc LINE L1 2683 3032 -3183 1176 278 87 4 chr11 3474901 3475462 -147308091 + L1MEc LINE L1 3011 3618 -2597 4068 170 82 11 chr11 3475594 3475606 -147307947 - MER6 DNA MER2_type -29 836 826 1898 103 14 21 chr11 3475606 3475887 -147307666 - AluSq SINE Alu -30 283 5 4068 170 82 11 chr11 3475887 3476632 -147306921 - MER6 DNA MER2_type -39 826 20 2085 129 0 22 chr11 3476632 3476943 -147306610 + AluJb SINE Alu 1 304 -8 4068 170 82 11 chr11 3476943 3476965 -147306588 - MER6 DNA MER2_type -845 20 1 674 86 0 38 chr11 3477078 3477141 -147306412 - MER6 DNA MER2_type -189 676 617 1936 144 10 3 chr11 3477141 3477432 -147306121 + AluSx SINE Alu 1 293 -19 674 86 0 38 chr11 3477432 3477473 -147306080 - MER6 DNA MER2_type -248 617 576 376 268 98 49 chr11 3477706 3478012 -147305541 - MER20B DNA MER1_type -195 588 268 313 313 26 62 chr11 3479228 3479423 -147304130 - MIR SINE MIR -7 255 68 27 0 0 0 chr11 3479474 3479501 -147304052 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr11 3479909 3479945 -147303608 + AT_rich Low_complexity Low_complexity 1 36 0 361 290 67 60 chr11 3480253 3480536 -147303017 - MER65A LTR ERV1 0 445 161 281 301 52 15 chr11 3480643 3480779 -147302774 - MER65B LTR ERV1 -390 141 1 189 322 43 52 chr11 3481047 3481162 -147302391 - L2 LINE L2 -1834 1480 1367 240 283 167 43 chr11 3481379 3481793 -147301760 - L2 LINE L2 -2211 1103 639 9704 65 16 82 chr11 3482508 3483991 -147299562 - SVA Other Other 0 1386 1 1256 120 0 22 chr11 3483996 3484179 -147299374 - AluSg/x SINE Alu -12 300 122 267 255 0 32 chr11 3484311 3484405 -147299148 - MLT1H LTR MaLR -378 171 81 502 301 59 0 chr11 3484474 3484627 -147298926 + L1MC3 LINE L1 5453 5614 -2194 959 185 5 37 chr11 3484638 3484827 -147298726 - AluJo SINE Alu -129 183 1 443 278 53 47 chr11 3484883 3485221 -147298332 + L1MDa LINE L1 1421 1760 -4780 * 1978 205 58 42 chr11 3485220 3485767 -147297786 + L1MC3 LINE L1 6675 7230 -555 256 261 45 23 chr11 3485769 3485857 -147297696 + MER65A LTR ERV1 52 141 -304 366 291 65 38 chr11 3485977 3486238 -147297315 + MER65A LTR ERV1 175 442 -3 26 0 0 0 chr11 3486802 3486828 -147296725 + AT_rich Low_complexity Low_complexity 1 26 0 326 308 26 62 chr11 3486879 3487074 -147296479 + MIR SINE MIR 68 255 -7 1855 130 16 16 chr11 3487542 3487864 -147295689 - L1 LINE L1 -908 5238 4917 595 196 0 0 chr11 3487864 3487956 -147295597 - MER2 DNA MER2_type -252 93 2 355 292 10 0 chr11 3487964 3488060 -147295493 + MIR SINE MIR 163 259 -3 670 171 137 0 chr11 3488093 3488210 -147295343 + FLAM_C SINE Alu 1 133 0 4876 146 58 16 chr11 3489768 3490704 -147292849 + L1MA8 LINE L1 5315 6289 -2 366 345 77 5 chr11 3493688 3493897 -147289656 - MIR SINE MIR -5 257 34 636 250 48 30 chr11 3495522 3495865 -147287688 - L1MDa LINE L1 -4811 1571 1173 740 256 26 42 chr11 3495872 3496074 -147287479 - L1MC/D LINE L1 -605 5561 5443 523 273 125 30 chr11 3496088 3496352 -147287201 + MLT1H LTR MaLR 17 305 -244 273 283 81 30 chr11 3496389 3496488 -147287065 + L2 LINE L2 3205 3308 -5 2293 83 7 0 chr11 3496715 3497004 -147286549 + AluSq SINE Alu 1 291 -22 3807 164 45 10 chr11 3497327 3498045 -147285508 - L1MA8 LINE L1 -3 6288 5546 21 0 0 0 chr11 3498324 3498345 -147285208 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr11 3498457 3498489 -147285064 + AT_rich Low_complexity Low_complexity 1 32 0 239 246 27 27 chr11 3498589 3498699 -147284854 + L1ME LINE L1 5677 5786 -376 199 194 83 69 chr11 3498727 3498799 -147284754 - L2 LINE L2 -5 3308 3236 596 228 10 56 chr11 3498819 3499016 -147284537 + L1MA9 LINE L1 6095 6282 -30 212 333 69 0 chr11 3500109 3500196 -147283357 + MIR SINE MIR 30 122 -86 255 176 39 0 chr11 3500231 3500282 -147283271 - MER58A DNA MER1_type -1 223 171 656 238 0 0 chr11 3500295 3500417 -147283136 - MER58A DNA MER1_type 0 122 1 234 0 0 0 chr11 3500849 3500875 -147282678 + (TG)n Simple_repeat Simple_repeat 2 27 0 217 254 90 15 chr11 3500884 3500951 -147282602 - MIR SINE MIR -190 72 1 251 250 204 0 chr11 3501080 3501188 -147282365 + MIR SINE MIR 69 198 -64 207 339 43 0 chr11 3501508 3501623 -147281930 - L2 LINE L2 -1668 1646 1527 354 307 66 48 chr11 3501817 3501983 -147281570 + MIR SINE MIR 55 223 -39 218 342 34 68 chr11 3501983 3502249 -147281304 + L2 LINE L2 2624 2880 -434 200 368 28 28 chr11 3502741 3502847 -147280706 - MIR SINE MIR -67 141 36 333 0 0 0 chr11 3503988 3504025 -147279528 + (T)n Simple_repeat Simple_repeat 1 37 0 293 274 87 18 chr11 3504123 3504242 -147279311 + MIR SINE MIR 3 130 -78 1505 194 48 50 chr11 3505649 3506045 -147277508 - MLT2C1 LTR ERVL -2 395 1 338 185 15 0 chr11 3506069 3506134 -147277419 - L1 LINE L1 -1092 5054 4989 30 27 0 0 chr11 3506271 3506308 -147277245 + AT_rich Low_complexity Low_complexity 1 37 0 825 180 24 120 chr11 3506868 3507118 -147276435 - LTR8A LTR ERV1 -468 259 34 1849 125 42 0 chr11 3507130 3507417 -147276136 - L1PA16 LINE L1 -5 6161 5863 767 288 132 20 chr11 3507475 3507878 -147275675 - L1ME4a LINE L1 -217 5904 5457 27 0 0 0 chr11 3509613 3509640 -147273913 + AT_rich Low_complexity Low_complexity 1 27 0 1759 110 98 0 chr11 3512297 3512579 -147270974 + AluSp SINE Alu 4 310 0 245 220 20 0 chr11 3512706 3512756 -147270797 - MIR3 SINE MIR -7 201 151 258 270 16 0 chr11 3512758 3512821 -147270732 - MER113 DNA MER1_type? -4 517 454 297 128 0 0 chr11 3513369 3513416 -147270137 + (CA)n Simple_repeat Simple_repeat 2 48 0 7011 124 20 8 chr11 3515241 3516942 -147266611 + L1MA3 LINE L1 4583 6305 0 231 132 0 57 chr11 3516950 3517003 -147266550 + (TAAAAA)n Simple_repeat Simple_repeat 2 51 0 2234 102 0 0 chr11 3517005 3517310 -147266243 + AluSx SINE Alu 1 305 0 180 152 0 0 chr11 3517705 3517738 -147265815 + (TATG)n Simple_repeat Simple_repeat 2 34 0 224 235 0 44 chr11 3518423 3518491 -147265062 + G-rich Low_complexity Low_complexity 6 70 0 22 0 0 0 chr11 3519003 3519025 -147264528 + AT_rich Low_complexity Low_complexity 1 22 0 6518 114 26 48 chr11 3519062 3520408 -147263145 - L1MA3 LINE L1 0 6305 4987 * 7209 54 13 1 chr11 3520382 3521506 -147262047 - L1PA5 LINE L1 -2 6152 5018 367 0 0 0 chr11 3521506 3521547 -147262006 + L1P LINE L1 1264 1304 -4842 * 19967 111 15 30 chr11 3521544 3525453 -147258100 + L1PA7 LINE L1 252 4182 -2279 616 122 0 0 chr11 3525454 3525552 -147258001 - L1P LINE L1 -2793 3353 3256 * 43128 51 8 1 chr11 3525546 3531663 -147251890 - L1PA4 LINE L1 -4 6151 1 517 146 39 0 chr11 3531670 3531773 -147251780 - L1P LINE L1 -2889 3257 3151 11397 78 29 16 chr11 3531773 3534040 -147249513 + L1PA7 LINE L1 4185 6465 -4 227 316 13 0 chr11 3534112 3534191 -147249362 - MIR SINE MIR -110 152 73 1985 181 16 8 chr11 3535249 3535619 -147247934 + L1MD3 LINE L1 7623 7995 0 2520 78 0 0 chr11 3536312 3536620 -147246933 - AluY SINE Alu -3 308 1 575 315 50 0 chr11 3537557 3537738 -147245815 - MIR SINE MIR -65 197 8 231 167 0 0 chr11 3538008 3538050 -147245503 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 357 186 36 14 chr11 3539067 3539207 -147244346 + (TCTA)n Simple_repeat Simple_repeat 2 144 0 3282 237 60 10 chr11 3540049 3540911 -147242642 + L1ME3A LINE L1 5258 6162 -8 318 322 67 52 chr11 3542041 3542308 -147241245 + MARNA DNA Mariner 280 550 -36 527 242 8 8 chr11 3544402 3544526 -147239027 + L2 LINE L2 3187 3310 -3 556 251 70 20 chr11 3546175 3546347 -147237206 + MIR SINE MIR 41 217 -45 1647 85 55 4 chr11 3547427 3547663 -147235890 - L1MA1 LINE L1 0 6302 6055 557 283 108 14 chr11 3547713 3547859 -147235694 + L2 LINE L2 1783 1914 -1400 2301 156 27 16 chr11 3547859 3548230 -147235323 - THE1C LTR MaLR 0 375 1 557 283 108 14 chr11 3548230 3548369 -147235184 + L2 LINE L2 1914 2095 -1219 905 157 42 15 chr11 3548589 3548896 -147234657 + THE1C LTR MaLR 1 375 0 1445 221 60 38 chr11 3548936 3549302 -147234251 - MLT1A2 LTR MaLR 0 374 1 360 383 43 0 chr11 3550837 3551072 -147232481 + LTR16A LTR ERVL 206 450 0 916 99 14 14 chr11 3552239 3552380 -147231173 + AluSp SINE Alu 1 141 -172 5302 133 22 107 chr11 3552506 3553631 -147229922 + L1P LINE L1 347 1376 -4770 2576 195 42 7 chr11 3554217 3554673 -147228880 + MER70A LTR ERVL 1 472 0 1042 149 80 0 chr11 3554992 3555180 -147228373 - L1P LINE L1 -2093 4053 3851 * 6146 175 42 12 chr11 3555177 3555772 -147227781 + L1P LINE L1 4032 4607 -1539 544 150 0 0 chr11 3555772 3555852 -147227701 + MADE1 DNA Mariner 1 80 0 6146 175 42 12 chr11 3555852 3556185 -147227368 + L1P LINE L1 4607 4928 -1218 1924 40 9 4 chr11 3556185 3556401 -147227152 + L1PA5 LINE L1 5919 6146 -8 6146 175 42 12 chr11 3556401 3556675 -147226878 + L1P LINE L1 4928 5272 -874 1496 224 55 33 chr11 3557159 3557525 -147226028 - MLT1A2 LTR MaLR 0 374 1 280 275 83 33 chr11 3557805 3557925 -147225628 + LTR16A1 LTR ERVL 330 455 -2 1992 242 92 70 chr11 3558602 3559339 -147224214 + L1MB8 LINE L1 3059 3779 -2367 2020 125 0 0 chr11 3559339 3559620 -147223933 + AluSx SINE Alu 32 312 0 1992 242 92 70 chr11 3559620 3559851 -147223702 + L1MB8 LINE L1 3779 4004 -2142 465 148 34 23 chr11 3559851 3559939 -147223614 + L1MA10 LINE L1 6238 6326 -8 1992 242 92 70 chr11 3559939 3559950 -147223603 + L1MB8 LINE L1 4004 4013 -2133 3396 185 28 17 chr11 3559950 3560641 -147222912 + L1MB8 LINE L1 5481 6178 0 1992 242 92 70 chr11 3560641 3560725 -147222828 + L1MB8 LINE L1 4013 4147 -1999 525 280 63 5 chr11 3560733 3560922 -147222631 + L1ME2 LINE L1 4579 4778 -1368 1314 237 188 26 chr11 3560939 3561202 -147222351 + L1ME2 LINE L1 4856 5075 -1089 1614 151 3 69 chr11 3561202 3561521 -147222032 + AluJb SINE Alu 1 298 -14 1314 237 188 26 chr11 3561521 3562267 -147221286 + L1ME2 LINE L1 5075 6087 -77 1670 137 78 18 chr11 3562267 3562551 -147221002 - AluJo SINE Alu -11 301 1 1314 237 188 26 chr11 3562551 3562644 -147220909 + L1ME2 LINE L1 6087 6164 0 236 288 17 0 chr11 3562960 3563019 -147220534 + L2 LINE L2 3196 3255 -17 1098 219 44 9 chr11 3563316 3563544 -147220009 - MER8 DNA MER2_type -3 236 1 23 33 0 0 chr11 3565627 3565657 -147217896 + AT_rich Low_complexity Low_complexity 1 30 0 425 250 43 43 chr11 3567959 3568123 -147215430 + MIR SINE MIR 23 186 -76 992 103 122 0 chr11 3568716 3568872 -147214681 - MER30 DNA MER1_type -55 175 1 264 315 0 0 chr11 3568945 3569037 -147214516 + MIR SINE MIR 167 258 -4 371 323 65 26 chr11 3569050 3569205 -147214348 - L2 LINE L2 -8 3264 3104 237 304 244 7 chr11 3569521 3569656 -147213897 + MIR SINE MIR 83 249 -13 421 277 62 28 chr11 3570283 3570460 -147213093 - L2 LINE L2 -8 3305 3123 1254 161 70 21 chr11 3570461 3570703 -147212850 + L1M2 LINE L1 5459 5712 -579 4361 144 57 32 chr11 3570715 3571048 -147212505 + L1MA8 LINE L1 5458 5781 -510 216 0 0 0 chr11 3571048 3571072 -147212481 + (CA)n Simple_repeat Simple_repeat 1 24 0 4361 144 57 32 chr11 3571072 3571551 -147212002 + L1MA8 LINE L1 5781 6290 -1 1154 304 82 25 chr11 3571557 3572356 -147211197 - L2 LINE L2 -179 3134 2292 7156 46 17 2 chr11 3572361 3573257 -147210296 - L1PA5 LINE L1 -1027 5119 4211 7803 46 3 1 chr11 3573257 3574275 -147209278 + L1PA5 LINE L1 5136 6152 -2 253 157 229 29 chr11 3574275 3574345 -147209208 - MER5A DNA MER1_type -97 92 9 192 77 0 0 chr11 3574385 3574411 -147209142 + (A)n Simple_repeat Simple_repeat 1 26 0 394 259 299 11 chr11 3574413 3574687 -147208866 - L2 LINE L2 -1028 2286 1934 1222 134 24 14 chr11 3574691 3574900 -147208653 + L1PB1 LINE L1 5941 6151 0 1959 190 61 10 chr11 3574914 3575599 -147207954 + L1M3 LINE L1 4898 5614 -566 228 220 125 56 chr11 3576091 3576253 -147207300 - MIR SINE MIR -70 192 17 570 147 0 40 chr11 3576414 3576564 -147206989 + (AGGGGG)n Simple_repeat Simple_repeat 5 148 0 1400 166 14 0 chr11 3577752 3577975 -147205578 + MER1B DNA MER1_type 1 226 -71 1072 124 16 32 chr11 3578929 3579114 -147204439 + L1PA13 LINE L1 5982 6163 0 600 63 13 0 chr11 3579590 3579669 -147203884 - MADE1 DNA Mariner 0 80 1 1056 294 95 27 chr11 3579884 3580485 -147203068 - L2 LINE L2 -422 2892 2251 205 191 16 48 chr11 3580545 3580608 -147202945 + GA-rich Low_complexity Low_complexity 5 65 0 314 329 72 6 chr11 3580619 3580786 -147202767 - L2 LINE L2 -1424 1890 1713 291 397 49 0 chr11 3583640 3583824 -147199729 - L3 LINE CR1 -61 1516 1324 3591 166 68 7 chr11 3584542 3585261 -147198292 - L1MA4 LINE L1 -11 6289 5527 3839 122 28 18 chr11 3585261 3585868 -147197685 + MER50-int LTR ERV1 6591 7203 -2 2533 185 41 126 chr11 3585868 3586485 -147197068 + MER50 LTR ERV1 10 549 -185 2029 152 3 0 chr11 3586485 3586794 -147196759 - AluSx SINE Alu 0 312 3 2533 185 41 126 chr11 3586794 3586955 -147196598 + MER50 LTR ERV1 549 722 -12 1374 174 123 119 chr11 3586995 3587540 -147196013 + LTR10B LTR ERV1 1 547 0 7321 250 41 28 chr11 3587540 3592382 -147191171 + LTR10B-int LTR ERV1 5 3922 -2727 803 174 48 48 chr11 3592391 3592558 -147190995 - LTR5 LTR ERVK -14 955 789 598 174 0 109 chr11 3592602 3592740 -147190813 - HERVKC4 LTR ERVK -4526 736 614 * 4039 172 20 6 chr11 3592710 3593412 -147190141 - HERVKC4 LTR ERVK -6531 712 1 3623 204 21 63 chr11 3593424 3594417 -147189136 - LTR5 LTR ERVK -14 955 5 3898 277 13 17 chr11 3594419 3595487 -147188066 + LTR10B-int LTR ERV1 4941 6004 -1781 6539 239 30 27 chr11 3595537 3597189 -147186364 + LTR10B-int LTR ERV1 4994 6649 0 338 153 68 126 chr11 3597243 3597433 -147186120 + LTR10B LTR ERV1 107 285 -262 1319 174 41 16 chr11 3597492 3597734 -147185819 + LTR10B LTR ERV1 300 547 0 4234 236 117 92 chr11 3597735 3598322 -147185231 + MSTC-int LTR MaLR 76 647 -1088 3743 158 49 29 chr11 3598322 3598980 -147184573 + LTR51 LTR ERV1 1 671 0 4234 236 117 92 chr11 3598980 3600010 -147183543 + MSTC-int LTR MaLR 647 1733 -2 2224 146 72 46 chr11 3600017 3600434 -147183119 + MSTC LTR MaLR 1 428 0 184 333 36 12 chr11 3602317 3602401 -147181152 - L2 LINE L2 -36 3277 3192 447 327 146 16 chr11 3602769 3603139 -147180414 - L2 LINE L2 -640 2674 2257 1581 294 153 59 chr11 3603238 3604504 -147179049 + L2 LINE L2 1614 2987 -285 289 297 156 23 chr11 3605361 3605617 -147177936 - L2 LINE L2 -1160 2154 1865 2138 91 0 0 chr11 3605854 3606141 -147177412 + AluY SINE Alu 1 287 -24 202 193 91 57 chr11 3606198 3606286 -147177267 - MIR SINE MIR -78 184 94 543 222 0 128 chr11 3606999 3607233 -147176320 + MER3 DNA MER1_type 1 204 -5 359 323 63 26 chr11 3609119 3609308 -147174245 - L3 LINE CR1 -59 1518 1323 2043 189 27 5 chr11 3609733 3610108 -147173445 + MLT1B LTR MaLR 3 385 -5 2700 184 107 23 chr11 3610111 3610627 -147172926 + MLT1B-int LTR MaLR 5 678 -693 2186 157 18 32 chr11 3610627 3611061 -147172492 + L1MA5 LINE L1 5868 6295 -5 2700 184 107 23 chr11 3611061 3611232 -147172321 + MLT1B-int LTR MaLR 678 833 -538 1469 212 119 11 chr11 3611522 3611876 -147171677 + MLT1B-int LTR MaLR 978 1369 -2 1746 153 150 23 chr11 3611878 3612224 -147171329 + MLT1B LTR MaLR 1 390 0 674 273 73 78 chr11 3613115 3613473 -147170080 + L2 LINE L2 2433 2790 -524 1256 144 158 78 chr11 3613473 3613820 -147169733 + THE1C LTR MaLR 1 375 0 674 273 73 78 chr11 3613820 3613845 -147169708 + L2 LINE L2 2790 2814 -500 346 306 51 25 chr11 3614073 3614269 -147169284 + L1MEc LINE L1 1620 1820 -4576 194 313 50 0 chr11 3616053 3616133 -147167420 - L2 LINE L2 -679 2635 2552 584 297 71 53 chr11 3617169 3617580 -147165973 - L2 LINE L2 -635 2679 2262 2086 301 154 32 chr11 3617682 3617773 -147165780 + L2 LINE L2 1601 1680 -1634 372 22 0 0 chr11 3617773 3617818 -147165735 + (CA)n Simple_repeat Simple_repeat 2 46 0 2086 301 154 32 chr11 3617818 3618953 -147164600 + L2 LINE L2 1680 2977 -337 308 336 107 24 chr11 3619843 3620179 -147163374 - L2 LINE L2 -1240 2074 1711 187 304 83 48 chr11 3620256 3620424 -147163129 - MIR SINE MIR -38 224 51 222 322 33 0 chr11 3620671 3620761 -147162792 - MIR SINE MIR -18 244 152 30 69 0 0 chr11 3620761 3620819 -147162734 + AT_rich Low_complexity Low_complexity 1 58 0 506 246 222 0 chr11 3621147 3621318 -147162235 + MER3 DNA MER1_type 1 209 0 1719 164 134 3 chr11 3623612 3623704 -147159849 + MER7A DNA MER2_type 3 82 -2956 776 98 98 8 chr11 3623704 3623827 -147159726 - L1PA13 LINE L1 -5 6158 6025 1719 164 134 3 chr11 3623827 3624039 -147159514 + MER7A DNA MER2_type 82 345 -1 338 264 74 31 chr11 3624058 3624221 -147159332 + MLT1I LTR MaLR 1 170 -239 4118 148 26 6 chr11 3624221 3624884 -147158669 + L1PA13 LINE L1 5482 6157 -6 767 119 0 9 chr11 3624977 3625086 -147158467 + L1PA13 LINE L1 5777 5884 -279 235 257 14 57 chr11 3625086 3625156 -147158397 + MLT1I LTR MaLR 177 243 -166 21 36 0 0 chr11 3625220 3625248 -147158305 + AT_rich Low_complexity Low_complexity 1 28 0 392 237 44 51 chr11 3625344 3625472 -147158081 + MLT1I LTR MaLR 278 439 -11 6939 117 26 16 chr11 3625690 3626687 -147156866 - LTR13 LTR ERVK 0 1007 1 7440 227 14 12 chr11 3626687 3628980 -147154573 - HERVK13 LTR ERVK 0 8116 5812 3715 231 126 12 chr11 3628974 3629939 -147153614 - HERVK13 LTR ERVK -2473 5643 4569 * 555 289 6 0 chr11 3629929 3630088 -147153465 - HERVK13 LTR ERVK -3990 4126 3967 * 1150 208 73 118 chr11 3630093 3630710 -147152843 - HERVK13 LTR ERVK -6814 1302 714 926 119 15 0 chr11 3630723 3630857 -147152696 - HERVK13 LTR ERVK -7907 209 74 906 179 0 6 chr11 3631085 3631247 -147152306 - L1P LINE L1 -1132 5014 4854 2223 162 65 25 chr11 3631254 3631698 -147151855 - L1MA8 LINE L1 -345 6967 6506 * 8671 220 112 28 chr11 3631675 3631895 -147151658 - L1MA8 LINE L1 -1431 5736 5536 2230 78 7 46 chr11 3631895 3632201 -147151352 - AluY SINE Alu -17 294 1 8671 220 112 28 chr11 3632201 3632687 -147150866 - L1MA8 LINE L1 -1631 5536 5093 1805 143 7 7 chr11 3632687 3632973 -147150580 - AluJb SINE Alu -15 297 12 8671 220 112 28 chr11 3632973 3636346 -147147207 - L1MA8 LINE L1 -2074 5093 1622 285 185 87 0 chr11 3637353 3637445 -147146108 + Charlie2 DNA MER1_type 2690 2789 -73 2254 198 105 7 chr11 3638486 3638916 -147144637 + MER70A LTR ERVL 1 472 0 1041 140 91 0 chr11 3639235 3639421 -147144132 - L1PA12 LINE L1 -2093 4053 3851 * 5228 151 51 7 chr11 3639418 3640010 -147143543 + L1PA12 LINE L1 4032 4681 -1465 507 175 0 0 chr11 3640010 3640090 -147143463 + MADE1 DNA Mariner 1 80 0 5228 151 51 7 chr11 3640090 3640423 -147143130 + L1PA12 LINE L1 4681 4998 -1148 2014 43 4 0 chr11 3640423 3640642 -147142911 + L1PA5 LINE L1 5919 6149 -5 5981 92 68 2 chr11 3640666 3641748 -147141805 + L1PA12 LINE L1 5020 6164 -4 1191 293 82 25 chr11 3642627 3643184 -147140369 - MLT2F LTR ERVL 0 628 7 217 306 197 0 chr11 3645221 3645404 -147138149 - MIR SINE MIR -30 232 14 946 110 0 0 chr11 3647749 3647876 -147135677 + L1PA14 LINE L1 6023 6149 -12 1767 113 13 0 chr11 3649831 3650070 -147133483 - AluSc SINE Alu -16 293 52 233 277 0 15 chr11 3651128 3651193 -147132360 + MIR SINE MIR 88 151 -111 423 0 0 0 chr11 3651600 3651647 -147131906 + (TG)n Simple_repeat Simple_repeat 2 48 0 190 250 73 15 chr11 3651880 3651948 -147131605 + MIR SINE MIR 123 194 -68 1505 113 50 4 chr11 3653118 3653378 -147130175 - L1PA8A LINE L1 -465 5666 5469 2657 112 32 10 chr11 3653399 3653802 -147129751 - L1PA8 LINE L1 -7 6165 5754 1092 242 125 50 chr11 3653802 3654219 -147129334 + MLT2B1 LTR ERVL 72 519 -1 312 182 91 0 chr11 3655101 3655167 -147128386 + L1MEc LINE L1 2312 2383 -4013 14761 178 103 47 chr11 3655229 3656879 -147126674 + L1MA1 LINE L1 16 1572 -5993 559 153 41 0 chr11 3656879 3656977 -147126576 + AluSg/x SINE Alu 211 312 0 14761 178 103 47 chr11 3656977 3658325 -147125228 + L1MA1 LINE L1 1572 2843 -4722 2495 117 45 17 chr11 3658325 3658677 -147124876 + THE1B LTR MaLR 1 362 -2 14761 178 103 47 chr11 3658677 3658853 -147124700 + L1MA1 LINE L1 2843 3008 -4557 2016 132 10 3 chr11 3658853 3659149 -147124404 + AluSx SINE Alu 1 298 -14 14761 178 103 47 chr11 3659149 3659839 -147123714 + L1MA1 LINE L1 3008 3658 -3907 1786 236 126 37 chr11 3659839 3660348 -147123205 + MLT2B3 LTR ERVL 1 554 0 14761 178 103 47 chr11 3660348 3660654 -147122899 + L1MA1 LINE L1 3658 4517 -3048 1423 129 62 17 chr11 3660623 3661013 -147122540 + L1MA1 LINE L1 6673 7044 -677 * 1843 153 81 36 chr11 3661013 3661372 -147122181 + THE1C LTR MaLR 1 375 0 1423 129 62 17 chr11 3661372 3661927 -147121626 + L1MA1 LINE L1 7044 7721 0 714 251 100 39 chr11 3661934 3662344 -147121209 + L1MEc LINE L1 2380 2814 -3401 256 188 50 38 chr11 3662361 3662441 -147121112 - L1 LINE L1 -2635 3511 3431 2088 263 91 12 chr11 3662447 3663268 -147120285 - L1P LINE L1 -2762 3384 2499 949 201 51 55 chr11 3663274 3663331 -147120222 + L1MA9 LINE L1 5512 5568 -744 1305 179 236 23 chr11 3663331 3663682 -147119871 - MSTA LTR MaLR -2 426 1 949 201 51 55 chr11 3663682 3663898 -147119655 + L1MA9 LINE L1 5568 5784 -528 949 228 166 13 chr11 3663902 3664288 -147119265 + L1MA9 LINE L1 5825 6269 -43 36372 93 21 17 chr11 3664374 3667648 -147115905 + L1PA6 LINE L1 2 3315 -2839 2392 90 0 3 chr11 3667648 3667959 -147115594 + AluY SINE Alu 2 311 0 36372 93 21 17 chr11 3667959 3670807 -147112746 + L1PA6 LINE L1 3315 6150 -4 239 325 136 31 chr11 3670963 3671154 -147112399 - L2 LINE L2 -2728 586 376 205 337 51 10 chr11 3671308 3671406 -147112147 + MIR SINE MIR 66 167 -95 828 191 82 0 chr11 3671407 3671554 -147111999 + FRAM SINE Alu 1 151 -25 2792 157 29 15 chr11 3671608 3672087 -147111466 + L1PB2 LINE L1 5663 6148 -3 289 300 20 30 chr11 3673625 3673725 -147109828 - MIR SINE MIR -140 122 24 23 0 0 0 chr11 3674683 3674706 -147108847 + AT_rich Low_complexity Low_complexity 1 23 0 182 376 116 29 chr11 3674719 3675065 -147108488 - L2 LINE L2 -41 3231 2856 692 266 71 38 chr11 3676180 3676610 -147106943 - LTR33 LTR ERVL -40 481 10 340 299 111 7 chr11 3680068 3680212 -147103341 - MIR SINE MIR -76 186 28 534 299 117 28 chr11 3681229 3681587 -147101966 + LTR16B LTR ERVL 15 404 -60 7177 28 14 29 chr11 3681624 3682982 -147100571 - L1PA4 LINE L1 -3 6152 4789 257 339 112 13 chr11 3683006 3683239 -147100314 + HERV16 LTR ERVL 313 568 -4428 305 252 73 24 chr11 3683338 3683461 -147100092 + HERV16 LTR ERVL 719 847 -4149 1906 140 107 6 chr11 3683493 3683821 -147099732 + LTR1B LTR ERV1 44 404 -422 1023 224 38 0 chr11 3683818 3684028 -147099525 + LTR1B LTR ERV1 599 816 -10 * 2460 216 67 34 chr11 3684030 3684586 -147098967 + HUERS-P2 LTR ERV1 2 575 -2513 * 13333 146 55 49 chr11 3684583 3686957 -147096596 + HUERS-P2 LTR ERV1 701 3088 0 4476 152 58 14 chr11 3686957 3687740 -147095813 + LTR1B LTR ERV1 1 817 -9 334 364 94 19 chr11 3687919 3688227 -147095326 + HERV16 LTR ERVL 1246 1576 -3420 396 303 98 0 chr11 3688398 3688530 -147095023 + HERV16 LTR ERVL 1854 1998 -2998 1294 319 91 20 chr11 3688759 3689794 -147093759 + HERV16 LTR ERVL 2543 3654 -2000 503 349 53 11 chr11 3689813 3690094 -147093459 + HERV16 LTR ERVL 3400 3692 -1304 692 319 85 54 chr11 3690112 3690943 -147092610 + HERV16 LTR ERVL 4017 4906 -612 348 283 87 91 chr11 3690998 3691492 -147092061 + HERV16 LTR ERVL 4505 4996 0 739 307 101 4 chr11 3691492 3691769 -147091784 + LTR16B LTR ERVL 1 304 -160 27312 126 40 61 chr11 3692067 3698384 -147085169 + L1PA8 LINE L1 1 6169 -3 412 195 62 70 chr11 3699155 3699283 -147084270 + MER34B LTR ERV1 5 131 -434 370 177 177 10 chr11 3699516 3699612 -147083941 + MER34B LTR ERV1 450 561 -4 1815 120 106 0 chr11 3700384 3700659 -147082894 - AluSp SINE Alu -9 304 1 3380 137 131 17 chr11 3701034 3701727 -147081826 - MER4E LTR ERV1 -7 772 1 1205 128 11 6 chr11 3701901 3702081 -147081472 + LTR1B LTR ERV1 1 181 -645 2762 120 84 50 chr11 3702436 3702961 -147080592 + LTR1B LTR ERV1 282 824 -2 1029 276 138 58 chr11 3703701 3704432 -147079121 + HERV16 LTR ERVL 1841 2630 -2366 338 215 25 13 chr11 3704469 3704548 -147079005 + MER3 DNA MER1_type 29 108 -101 1162 244 95 15 chr11 3705416 3705817 -147077736 - L1 LINE L1 -3389 2757 2325 586 217 151 7 chr11 3705984 3706136 -147077417 + MLT1A1 LTR MaLR 1 174 -191 713 162 184 11 chr11 3706693 3706872 -147076681 - L1PB4 LINE L1 -4 6152 5943 1003 159 19 0 chr11 3707402 3707559 -147075994 - AluSp SINE Alu -17 296 137 2165 117 7 3 chr11 3707559 3707858 -147075695 - AluSc SINE Alu -9 300 1 220 216 0 0 chr11 3708418 3708469 -147075084 + A-rich Low_complexity Low_complexity 1 51 0 1834 131 3 11 chr11 3708470 3708752 -147074801 - AluSp SINE Alu -33 280 1 847 329 54 19 chr11 3709919 3710329 -147073224 - LTR16A LTR ERVL 0 450 27 3557 147 65 7 chr11 3710400 3710980 -147072573 - LTR18B LTR ERVL 0 614 1 180 77 0 0 chr11 3711717 3711743 -147071810 + (CA)n Simple_repeat Simple_repeat 1 26 0 362 312 24 0 chr11 3712345 3712470 -147071083 - MLT1F1 LTR MaLR -372 195 68 218 322 91 16 chr11 3714207 3714328 -147069225 + MIR SINE MIR 105 234 -28 22 0 0 0 chr11 3715348 3715370 -147068183 + AT_rich Low_complexity Low_complexity 1 22 0 2023 131 23 7 chr11 3715370 3715676 -147067877 - AluSx SINE Alu -1 311 1 278 225 45 81 chr11 3715843 3715954 -147067599 + L1ME3 LINE L1 6048 6154 -8 259 182 45 34 chr11 3716112 3716200 -147067353 + L1M4 LINE L1 3174 3262 -2884 581 326 38 4 chr11 3717905 3718144 -147065409 - MIR SINE MIR -14 248 2 294 310 39 26 chr11 3721773 3721928 -147061625 + MIR SINE MIR 105 261 -1 240 277 0 96 chr11 3723053 3723147 -147060406 + L1ME3 LINE L1 6046 6130 -32 612 304 78 4 chr11 3725109 3725339 -147058214 - MIR SINE MIR -14 248 2 22 35 0 0 chr11 3726287 3726316 -147057237 + AT_rich Low_complexity Low_complexity 1 29 0 3932 34 0 2 chr11 3728925 3729369 -147054184 + L1PA4 LINE L1 5713 6155 0 257 297 47 0 chr11 3731000 3731064 -147052489 - L2 LINE L2 -51 3221 3155 2331 78 0 3 chr11 3732157 3732452 -147051101 + AluY SINE Alu 1 294 -17 215 330 106 11 chr11 3735992 3736086 -147047467 - MIR SINE MIR -75 133 31 534 204 10 19 chr11 3736619 3736722 -147046831 + MER5A DNA MER1_type 9 110 -79 470 287 139 3 chr11 3736883 3737080 -147046473 - MIR SINE MIR -27 235 15 192 238 71 0 chr11 3737557 3737599 -147045954 + MIR SINE MIR 105 149 -59 367 259 89 30 chr11 3739334 3739469 -147044084 + L2 LINE L2 3129 3271 -1 505 203 62 23 chr11 3739547 3739675 -147043878 - MIR SINE MIR 0 262 130 396 204 29 48 chr11 3740154 3740257 -147043296 + L2 LINE L2 3169 3269 -44 320 244 150 33 chr11 3740485 3740698 -147042855 + HAL1 LINE L1 2270 2507 0 261 0 0 0 chr11 3741657 3741686 -147041867 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 228 349 66 9 chr11 3742283 3742389 -147041164 - L2 LINE L2 -15 3257 3146 252 0 0 0 chr11 3743699 3743727 -147039826 + (TG)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr11 3744032 3744056 -147039497 + AT_rich Low_complexity Low_complexity 1 24 0 231 227 34 11 chr11 3744192 3744280 -147039273 + T-rich Low_complexity Low_complexity 5 94 0 342 337 59 19 chr11 3744755 3745109 -147038444 - LTR67 LTR ERVL -19 538 137 456 323 45 45 chr11 3745236 3745502 -147038051 + MLT1I LTR MaLR 98 363 -46 275 297 42 34 chr11 3745537 3745655 -147037898 - LTR67 LTR ERVL -437 120 2 1076 48 0 0 chr11 3745946 3746072 -147037481 + L1PA4 LINE L1 6027 6152 -3 22 35 0 0 chr11 3746072 3746101 -147037452 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 3746148 3746169 -147037384 + AT_rich Low_complexity Low_complexity 1 21 0 1362 203 22 120 chr11 3746366 3746766 -147036787 - MLT1A1 LTR MaLR 0 365 5 195 375 71 5 chr11 3748381 3748565 -147034988 - L2 LINE L2 -1647 1667 1472 746 284 50 0 chr11 3748699 3748900 -147034653 + LTR16C LTR ERVL 150 360 -131 346 277 134 9 chr11 3748893 3749005 -147034548 + LTR16C LTR ERVL 237 362 -129 * 816 74 0 40 chr11 3749006 3749155 -147034398 + (TCCCC)n Simple_repeat Simple_repeat 3 145 0 20933 94 32 12 chr11 3749257 3752403 -147031150 - L1P LINE L1 -1021 5125 1917 5613 111 15 1 chr11 3752405 3753616 -147029937 + L1PA11 LINE L1 4801 6024 -150 303 190 0 147 chr11 3753619 3753735 -147029818 - LTR57-int LTR ERVL -4211 1132 1034 * 309 187 0 138 chr11 3753636 3753759 -147029794 - MER4-int LTR ERV1 -7021 1099 994 * 506 203 25 131 chr11 3753749 3753985 -147029568 - MER4-int LTR ERV1 -4554 2044 1834 876 236 69 29 chr11 3753985 3754231 -147029322 - MER34C LTR ERV1 -172 413 158 539 231 7 21 chr11 3754231 3754374 -147029179 - MER4-int LTR ERV1 -4132 991 851 2178 164 36 68 chr11 3754491 3754992 -147028561 - MER4-int LTR ERV1 -6705 832 348 2687 127 65 59 chr11 3754998 3755547 -147028006 + LTR9 LTR ERV1 1 766 -28 895 186 5 69 chr11 3755547 3755735 -147027818 + HUERS-P3b LTR ERV1 358 533 -6885 3116 161 63 14 chr11 3755769 3756339 -147027214 + HUERS-P3b LTR ERV1 742 1339 -7580 * 3594 121 0 4 chr11 3756331 3756826 -147026727 + HUERS-P3b LTR ERV1 1532 2024 -5394 1410 48 0 0 chr11 3756823 3756989 -147026564 + HUERS-P3b LTR ERV1 2477 2642 -4776 * 1612 155 49 0 chr11 3756989 3757253 -147026300 - LTR8 LTR ERV1 -250 441 165 376 272 24 0 chr11 3757375 3757500 -147026053 + LTR16C LTR ERVL 364 491 0 270 0 0 0 chr11 3757593 3757623 -147025930 + (T)n Simple_repeat Simple_repeat 1 30 0 2440 130 107 18 chr11 3758133 3758524 -147025029 - MSTA LTR MaLR -2 426 1 366 241 28 35 chr11 3758562 3758703 -147024850 + (CATATA)n Simple_repeat Simple_repeat 6 145 0 200 244 73 49 chr11 3758825 3758907 -147024646 + MIR SINE MIR 95 178 -84 291 304 13 0 chr11 3759118 3759197 -147024356 + L2 LINE L2 3187 3266 -6 1493 109 100 9 chr11 3760232 3760461 -147023092 + L1PB1 LINE L1 5900 6149 -2 801 168 35 0 chr11 3760611 3760754 -147022799 + MER57A LTR ERV1 1 148 -255 9366 24 0 0 chr11 3761109 3762190 -147021363 - L1P LINE L1 -867 5279 4199 3557 21 2 0 chr11 3762185 3762756 -147020797 + L1PA2 LINE L1 5406 6155 0 * 1218 202 32 4 chr11 3763001 3763248 -147020305 + MER57A LTR ERV1 150 403 0 1384 262 17 26 chr11 3763248 3763595 -147019958 + MER57A-int LTR ERV1 1 344 -7193 1114 157 6 0 chr11 3763596 3763768 -147019785 - LTR9 LTR ERV1 0 612 440 9908 104 24 11 chr11 3763790 3764580 -147018973 - HUERS-P3b LTR ERV1 -1733 5685 4867 2130 130 3 10 chr11 3764580 3764887 -147018666 - AluSx SINE Alu -7 305 1 9908 104 24 11 chr11 3764887 3765578 -147017975 - HUERS-P3b LTR ERV1 -2551 4867 4186 3318 78 32 34 chr11 3765576 3766048 -147017505 - HUERS-P3b LTR ERV1 -3875 3543 3073 * 2534 177 30 2 chr11 3766048 3766477 -147017076 + LTR8 LTR ERV1 1 441 -250 1410 48 0 0 chr11 3766477 3766643 -147016910 - HUERS-P3b LTR ERV1 -4776 2642 2477 * 3594 121 0 4 chr11 3766640 3767135 -147016418 - HUERS-P3b LTR ERV1 -5394 2024 1532 3116 161 63 14 chr11 3767127 3767697 -147015856 - HUERS-P3b LTR ERV1 -7580 1339 742 * 895 186 5 69 chr11 3767731 3767919 -147015634 - HUERS-P3b LTR ERV1 -6885 533 358 2687 127 65 59 chr11 3767919 3768468 -147015085 - LTR9 LTR ERV1 -28 766 1 2178 164 36 68 chr11 3768474 3768975 -147014578 + LOR1-int LTR ERV1 348 832 -6705 514 225 14 21 chr11 3769092 3769234 -147014319 + LOR1-int LTR ERV1 851 991 -4132 876 236 69 29 chr11 3769234 3769480 -147014073 + MER34C LTR ERV1 158 413 -172 506 203 25 131 chr11 3769480 3769716 -147013837 + LOR1-int LTR ERV1 1834 2044 -4554 309 187 0 138 chr11 3769706 3769829 -147013724 + LOR1-int LTR ERV1 994 1099 -7021 * 303 190 0 147 chr11 3769730 3769846 -147013707 + LTR57-int LTR ERVL 1034 1132 -4211 * 5613 111 15 1 chr11 3769849 3771060 -147012493 - L1PA11 LINE L1 -150 6024 4801 5844 92 18 23 chr11 3771062 3771918 -147011635 + L1P LINE L1 1917 2767 -3379 3128 94 0 9 chr11 3771919 3772343 -147011210 + L1P LINE L1 3823 4242 -1904 225 0 0 0 chr11 3772380 3772405 -147011148 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 216 97 0 0 chr11 3772438 3772469 -147011084 + (A)n Simple_repeat Simple_repeat 1 31 0 8626 95 17 0 chr11 3772477 3774396 -147009157 + L1PA8 LINE L1 4233 6168 -4 526 200 20 10 chr11 3774396 3774489 -147009064 - L1MC/D LINE L1 -654 5588 5492 565 238 8 8 chr11 3774635 3774757 -147008796 + L2 LINE L2 3191 3312 -1 1608 274 89 21 chr11 3774763 3775654 -147007899 - L1MC/D LINE L1 -1052 5094 4144 24 0 0 0 chr11 3776341 3776365 -147007188 + AT_rich Low_complexity Low_complexity 1 24 0 470 348 41 88 chr11 3776694 3777456 -147006097 - L2 LINE L2 -340 2974 2249 257 306 184 10 chr11 3777660 3777948 -147005605 + L2 LINE L2 1732 2069 -1245 228 163 0 0 chr11 3779050 3779093 -147004460 + (TG)n Simple_repeat Simple_repeat 2 44 0 2054 130 0 3 chr11 3780049 3780356 -147003197 - AluSg SINE Alu -3 307 2 183 333 111 26 chr11 3780370 3780487 -147003066 - MER5B DNA MER1_type -45 133 7 1530 92 0 0 chr11 3783649 3783844 -146999709 + AluSc SINE Alu 106 300 -9 318 265 39 10 chr11 3783910 3784012 -146999541 - L1MEc LINE L1 -6135 261 157 248 310 28 14 chr11 3785608 3785750 -146997803 + (CTGGGG)n Simple_repeat Simple_repeat 3 146 0 547 298 104 26 chr11 3785995 3786511 -146997042 + L2 LINE L2 2684 3252 -61 183 213 64 163 chr11 3786626 3786767 -146996786 + L2 LINE L2 3018 3144 -128 228 260 52 0 chr11 3787772 3787849 -146995704 + MIR SINE MIR 118 198 -64 375 348 51 6 chr11 3788118 3788276 -146995277 + MIR SINE MIR 20 184 -78 240 345 73 18 chr11 3790680 3790845 -146992708 - L2 LINE L2 -375 2939 2766 763 275 37 20 chr11 3791055 3791299 -146992254 - MIR SINE MIR -13 249 2 1408 150 18 4 chr11 3792043 3792270 -146991283 + MER46A DNA MER2_type 1 230 -6 1592 235 28 43 chr11 3792526 3792986 -146990567 - LTR16A1 LTR ERVL -2 455 3 293 279 0 106 chr11 3795317 3795478 -146988075 - MIR SINE MIR -41 221 78 273 286 61 68 chr11 3795703 3795850 -146987703 - MER5B DNA MER1_type -30 148 3 202 255 28 166 chr11 3796245 3796390 -146987163 + L2 LINE L2 3123 3247 -25 667 287 135 45 chr11 3796395 3796750 -146986803 + MLT1J1 LTR MaLR 8 394 -52 964 348 91 55 chr11 3797039 3797677 -146985876 + L2 LINE L2 1556 2170 -1143 348 24 0 0 chr11 3797677 3797718 -146985835 + (CA)n Simple_repeat Simple_repeat 1 41 0 964 348 91 55 chr11 3797718 3798541 -146985012 + L2 LINE L2 2170 3062 -251 2175 117 0 3 chr11 3798586 3798894 -146984659 - AluSx SINE Alu -5 307 1 1675 246 96 25 chr11 3798947 3799519 -146984034 + MLT1E2 LTR MaLR 11 623 -3 213 329 13 40 chr11 3799567 3799643 -146983910 - L2 LINE L2 -58 3255 3182 494 213 89 78 chr11 3800013 3800437 -146983116 - LTR4 LTR ERV1 0 596 112 198 286 63 0 chr11 3801010 3801073 -146982480 - L2 LINE L2 -9 3263 3197 223 314 95 0 chr11 3801405 3801510 -146982043 + L2 LINE L2 2770 2884 -430 801 171 35 6 chr11 3803357 3803527 -146980026 - L1MA8 LINE L1 -2 6289 6115 198 0 0 0 chr11 3803529 3803551 -146980002 + (TCCC)n Simple_repeat Simple_repeat 3 24 0 228 182 0 0 chr11 3803557 3803601 -146979952 + CT-rich Low_complexity Low_complexity 2 45 0 1791 174 0 28 chr11 3803611 3803932 -146979621 - AluJo SINE Alu 0 312 1 184 250 16 31 chr11 3804160 3804224 -146979329 - MIR SINE MIR -40 222 160 2123 122 6 10 chr11 3804337 3804649 -146978904 + AluSp SINE Alu 1 311 -2 426 20 0 0 chr11 3804683 3804734 -146978819 + (TG)n Simple_repeat Simple_repeat 2 52 0 26 30 0 0 chr11 3805434 3805467 -146978086 + AT_rich Low_complexity Low_complexity 1 33 0 4923 148 52 9 chr11 3808219 3808618 -146974935 + L1MA9 LINE L1 5370 5751 -561 375 78 0 0 chr11 3808618 3808669 -146974884 + (CA)n Simple_repeat Simple_repeat 1 51 0 4923 148 52 9 chr11 3808669 3809118 -146974435 + L1MA9 LINE L1 5751 6254 -58 1392 165 0 0 chr11 3809120 3809344 -146974209 + L1PA16 LINE L1 5943 6166 0 421 171 0 0 chr11 3809346 3809422 -146974131 + L1MA9 LINE L1 6237 6312 0 894 205 72 0 chr11 3809431 3809626 -146973927 - L1MD1 LINE L1 -112 6524 6316 567 233 7 7 chr11 3809619 3809769 -146973784 - L1MD1 LINE L1 -873 5667 5518 * 3406 252 99 20 chr11 3809798 3810288 -146973265 - L1MD1 LINE L1 -1873 4667 4217 3507 153 53 14 chr11 3810288 3810324 -146973229 - L1MB2 LINE L1 -16 6155 6122 2391 86 7 3 chr11 3810324 3810628 -146972925 - AluSg SINE Alu -5 305 1 3507 153 53 14 chr11 3810628 3811218 -146972335 - L1MB2 LINE L1 -49 6122 5505 3406 252 99 20 chr11 3811218 3812135 -146971418 - L1MD1 LINE L1 -2323 4217 3149 2735 189 48 93 chr11 3812224 3812991 -146970562 - L1MD1 LINE L1 -5807 733 1 186 298 18 0 chr11 3813586 3813643 -146969910 + L2 LINE L2 3002 3059 -254 564 142 16 8 chr11 3814700 3814827 -146968726 + GA-rich Low_complexity Low_complexity 1 128 0 335 353 33 7 chr11 3814986 3815136 -146968417 - MIR SINE MIR 0 262 109 255 287 110 55 chr11 3815454 3815618 -146967935 - MIR3 SINE MIR -16 192 20 1192 174 0 94 chr11 3815745 3816033 -146967520 + L1MA10 LINE L1 6074 6334 0 264 260 144 33 chr11 3816383 3816516 -146967037 + MIR SINE MIR 18 168 -94 2379 75 0 28 chr11 3816516 3816834 -146966719 - AluSc SINE Alu 0 309 1 264 260 144 33 chr11 3816834 3816864 -146966689 + MIR SINE MIR 168 193 -69 489 302 53 11 chr11 3817254 3817443 -146966110 + LTR16C LTR ERVL 291 487 -4 2435 37 37 3 chr11 3817500 3817796 -146965757 + AluY SINE Alu 1 306 -5 293 246 84 53 chr11 3817827 3818007 -146965546 - LTR65 LTR ERV1 -6 663 292 2064 103 0 4 chr11 3818129 3818401 -146965152 + AluSq SINE Alu 1 271 -42 198 0 0 0 chr11 3818421 3818443 -146965110 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1720 203 28 52 chr11 3818617 3818657 -146964896 - MLT2D LTR ERVL 0 414 375 225 108 0 0 chr11 3818657 3818694 -146964859 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 1720 203 28 52 chr11 3818694 3819077 -146964476 - MLT2D LTR ERVL -39 375 1 569 167 11 0 chr11 3819543 3819633 -146963920 - AluJ/FLAM SINE Alu -220 92 2 289 134 176 17 chr11 3819635 3819754 -146963799 - Charlie5 DNA MER1_type -49 2563 2426 3170 119 33 6 chr11 3819758 3820247 -146963306 - L1MB4 LINE L1 -1 6179 5678 2109 132 3 3 chr11 3820253 3820557 -146962996 - AluSx SINE Alu -8 304 1 217 278 69 0 chr11 3821329 3821401 -146962152 + L3 LINE CR1 1500 1576 -1 27 0 0 0 chr11 3821432 3821459 -146962094 + AT_rich Low_complexity Low_complexity 1 27 0 373 337 85 24 chr11 3821779 3822025 -146961528 + MIR SINE MIR 2 262 0 899 194 0 0 chr11 3822150 3822294 -146961259 - FRAM SINE Alu -27 149 6 2234 99 0 7 chr11 3822331 3822625 -146960928 + AluSc SINE Alu 1 292 -17 197 333 108 17 chr11 3824457 3824577 -146958976 - L2 LINE L2 -197 3075 2945 239 307 86 64 chr11 3826827 3826967 -146956586 - MIR SINE MIR -83 179 37 345 272 53 26 chr11 3827322 3827436 -146956117 - L2 LINE L2 0 3272 3156 205 269 87 91 chr11 3828867 3829109 -146954444 - L2 LINE L2 -1 3271 3031 2038 295 83 39 chr11 3829307 3830466 -146953087 - L2 LINE L2 -33 3280 2071 22 0 0 0 chr11 3831158 3831180 -146952373 + AT_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr11 3831221 3831254 -146952299 + AT_rich Low_complexity Low_complexity 1 33 0 192 200 44 0 chr11 3831254 3831356 -146952197 + (TA)n Simple_repeat Simple_repeat 1 141 0 593 285 98 38 chr11 3831365 3831600 -146951953 + MIR SINE MIR 2 250 -12 286 339 36 55 chr11 3831791 3832028 -146951525 + MIR3 SINE MIR 38 208 0 1084 136 5 0 chr11 3834322 3834513 -146949040 + L1MA6 LINE L1 6107 6298 -2 2450 65 0 3 chr11 3834701 3835008 -146948545 + AluY SINE Alu 1 306 -5 303 299 23 0 chr11 3835750 3835837 -146947716 + L1MC4 LINE L1 6615 6703 -1339 225 0 0 0 chr11 3835837 3835862 -146947691 + (CA)n Simple_repeat Simple_repeat 2 26 0 252 347 89 45 chr11 3836846 3837226 -146946327 + L2 LINE L2 1845 2241 -1073 207 240 0 20 chr11 3838149 3838199 -146945354 + MIR SINE MIR 42 90 -172 485 342 27 46 chr11 3838232 3838495 -146945058 - MIR SINE MIR -3 259 2 251 224 0 0 chr11 3838502 3838551 -146945002 + MIR SINE MIR 96 144 -118 193 282 0 64 chr11 3838773 3838851 -146944702 - L3b LINE CR1 -143 1440 1368 841 154 0 34 chr11 3839239 3839414 -146944139 - L1MB8 LINE L1 -3 6175 6007 636 335 33 5 chr11 3840186 3840401 -146943152 + L2 LINE L2 2451 2671 -643 1792 191 82 14 chr11 3840533 3840947 -146942606 + MLT1D LTR MaLR 1 442 -63 244 286 26 13 chr11 3841007 3841084 -146942469 - MIR SINE MIR -150 112 35 322 292 131 13 chr11 3841973 3842209 -146941344 + L1ME LINE L1 5561 5824 -297 964 200 117 38 chr11 3842441 3842787 -146940766 + MSTC LTR MaLR 1 428 0 271 411 6 13 chr11 3843097 3843255 -146940298 - L2 LINE L2 0 3272 3116 268 270 135 0 chr11 3843309 3843383 -146940170 + MER5A DNA MER1_type 26 109 -80 34 24 0 0 chr11 3843781 3843822 -146939731 + AT_rich Low_complexity Low_complexity 1 41 0 204 347 0 11 chr11 3843882 3843977 -146939576 - L2 LINE L2 -319 2953 2860 202 209 30 15 chr11 3844188 3844255 -146939298 + (TAA)n Simple_repeat Simple_repeat 2 69 0 308 291 163 20 chr11 3844269 3844465 -146939088 - MIR SINE MIR -2 260 37 252 366 27 9 chr11 3846566 3846678 -146936875 + MIR SINE MIR 22 135 -73 1724 100 58 4 chr11 3846969 3847209 -146936344 + AluSc SINE Alu 1 253 -56 180 0 0 0 chr11 3847234 3847254 -146936299 + (TGG)n Simple_repeat Simple_repeat 2 21 0 1839 134 3 58 chr11 3847556 3847869 -146935684 + AluJb SINE Alu 17 312 0 2277 174 76 8 chr11 3847884 3848719 -146934834 - L1MB1 LINE L1 -13 6155 5226 191 380 28 28 chr11 3849142 3849284 -146934269 + L2 LINE L2 2031 2172 -1142 215 241 0 0 chr11 3950532 3950586 -146832967 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 412 317 91 4 chr11 3950993 3951236 -146832317 - L1ME LINE L1 -437 5725 5462 28 29 0 0 chr11 3951339 3951374 -146832179 + AT_rich Low_complexity Low_complexity 1 35 0 380 83 33 0 chr11 3952611 3952671 -146830882 + (TTCTC)n Simple_repeat Simple_repeat 4 65 0 270 0 0 0 chr11 3952832 3952862 -146830691 + (T)n Simple_repeat Simple_repeat 1 30 0 932 313 14 11 chr11 3953235 3953869 -146829684 - L1MC/D LINE L1 -769 5590 4955 393 296 14 10 chr11 3954723 3954916 -146828637 + HERVK LTR ERVK 3094 3748 -3495 230 274 0 0 chr11 3955140 3955202 -146828351 + (CAGG)n Simple_repeat Simple_repeat 2 63 0 250 250 95 17 chr11 3955207 3955323 -146828230 + FRAM SINE Alu 42 166 0 2193 267 31 20 chr11 3955342 3956402 -146827151 + L1PA16 LINE L1 4861 5930 -236 486 210 115 25 chr11 3958129 3958316 -146825237 + AluJo SINE Alu 118 318 0 25 31 0 0 chr11 3958332 3958364 -146825189 + AT_rich Low_complexity Low_complexity 1 32 0 206 186 23 0 chr11 3958439 3958482 -146825071 + A-rich Low_complexity Low_complexity 6 49 0 657 0 0 0 chr11 3958707 3958780 -146824773 + (GGGA)n Simple_repeat Simple_repeat 1 73 0 307 187 22 22 chr11 3959388 3959479 -146824074 + (TCTG)n Simple_repeat Simple_repeat 1 91 0 246 155 35 35 chr11 3959827 3959885 -146823668 + tRNA-Lys-AAA tRNA tRNA 6 63 -13 1063 289 67 56 chr11 3963605 3964672 -146818881 + HERVK LTR ERVK 2427 3397 -2548 578 253 84 103 chr11 3965211 3966134 -146817419 + HERVK LTR ERVK 4261 4998 -947 451 196 87 64 chr11 3968178 3968351 -146815202 + FRAM SINE Alu 1 176 0 25 31 0 0 chr11 3968521 3968553 -146815000 + AT_rich Low_complexity Low_complexity 1 32 0 4901 273 22 8 chr11 3972001 3973623 -146809930 + L1 LINE L1 2624 4268 -1878 222 37 0 0 chr11 3974022 3974049 -146809504 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 400 177 131 54 chr11 3974669 3974799 -146808754 + FRAM SINE Alu 37 176 0 241 220 0 17 chr11 3975559 3975618 -146807935 + tRNA-Lys-AAA tRNA tRNA 6 63 -13 33 25 0 0 chr11 3975704 3975744 -146807809 + AT_rich Low_complexity Low_complexity 1 40 0 239 220 0 17 chr11 3976043 3976102 -146807451 + tRNA-Lys-AAA tRNA tRNA 6 63 -13 281 106 21 21 chr11 3978635 3978682 -146804871 + AluSp SINE Alu 136 182 -121 275 284 34 0 chr11 3979309 3979397 -146804156 - L1MA5 LINE L1 -369 5931 5841 414 0 0 0 chr11 3979841 3979887 -146803666 + (GGA)n Simple_repeat Simple_repeat 3 48 0 312 27 0 0 chr11 3981034 3981071 -146802482 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 245 281 34 11 chr11 3981089 3981178 -146802375 + L1MA5 LINE L1 5841 5931 -369 281 106 21 21 chr11 3981813 3981860 -146801693 - AluSp SINE Alu -121 182 136 327 227 30 68 chr11 3982931 3983063 -146800490 + HERVK LTR ERVK 2515 2641 -3275 23 0 0 0 chr11 3983079 3983102 -146800451 + AT_rich Low_complexity Low_complexity 1 23 0 409 254 38 48 chr11 3983124 3983375 -146800178 + HERVK LTR ERVK 2976 3835 -3408 22 35 0 0 chr11 3983574 3983603 -146799950 + AT_rich Low_complexity Low_complexity 1 29 0 1363 320 14 15 chr11 3983875 3985065 -146798488 - L1MA5A LINE L1 -366 5931 4743 218 254 0 0 chr11 3985219 3985274 -146798279 + T-rich Low_complexity Low_complexity 4 58 0 6130 267 5 5 chr11 3985939 3988467 -146795086 - L1MA9 LINE L1 -381 5931 3402 342 153 0 0 chr11 3991561 3991620 -146791933 + (TA)n Simple_repeat Simple_repeat 1 59 0 240 221 0 26 chr11 3992776 3992853 -146790700 + (CAGAGA)n Simple_repeat Simple_repeat 6 80 0 183 80 0 0 chr11 3993082 3993107 -146790446 + (T)n Simple_repeat Simple_repeat 1 25 0 204 40 0 0 chr11 3993789 3993814 -146789739 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 282 192 29 29 chr11 3993927 3994031 -146789522 - L1P LINE L1 -2347 3799 3696 524 293 45 28 chr11 3995059 3995530 -146788023 + L1 LINE L1 3108 3586 -2560 225 209 15 0 chr11 3995770 3995837 -146787716 - MLT2A1 LTR ERVL 0 444 377 1419 300 34 60 chr11 3996387 3997612 -146785941 + L1 LINE L1 3856 5048 -1098 201 39 0 0 chr11 3998053 3998079 -146785474 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 284 204 116 14 chr11 3999054 3999192 -146784361 + AluS SINE Alu 3 95 -208 429 176 65 131 chr11 3999283 3999436 -146784117 + FLAM_C SINE Alu 1 143 0 1146 88 0 0 chr11 4004388 4004548 -146779005 + (TTCTC)n Simple_repeat Simple_repeat 4 163 0 295 228 109 0 chr11 4004587 4004679 -146778874 - FLAM_C SINE Alu -27 106 5 28 29 0 0 chr11 4004899 4004934 -146778619 + AT_rich Low_complexity Low_complexity 1 35 0 190 333 0 0 chr11 4005017 4005077 -146778476 - MIR SINE MIR -197 65 6 679 320 16 16 chr11 4005100 4005540 -146778013 - L1 LINE L1 -825 5321 4882 36 23 0 0 chr11 4006519 4006562 -146776991 + AT_rich Low_complexity Low_complexity 1 43 0 286 260 73 57 chr11 4008599 4008776 -146774777 - AluJo SINE Alu 0 302 123 323 259 95 20 chr11 4009247 4009426 -146774127 + AluSq/x SINE Alu 2 113 -189 22 80 0 0 chr11 4011216 4011266 -146772287 + AT_rich Low_complexity Low_complexity 1 50 0 243 0 0 0 chr11 4011781 4011808 -146771745 + (GTTTG)n Simple_repeat Simple_repeat 3 29 0 195 42 0 0 chr11 4011819 4011843 -146771710 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 333 211 105 11 chr11 4011893 4011988 -146771565 - AluSq/x SINE Alu -197 105 2 21 0 0 0 chr11 4012331 4012352 -146771201 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr11 4012505 4012546 -146771007 + AT_rich Low_complexity Low_complexity 1 41 0 501 319 51 24 chr11 4013607 4014090 -146769463 - L1M4 LINE L1 -959 5187 4719 336 24 0 0 chr11 4014090 4014131 -146769422 + (TTG)n Simple_repeat Simple_repeat 2 42 0 501 319 51 24 chr11 4014131 4014153 -146769400 - L1M4 LINE L1 -1427 4719 4699 189 0 0 0 chr11 4014153 4014174 -146769379 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 501 319 51 24 chr11 4014174 4014287 -146769266 - L1M4 LINE L1 -1447 4699 4552 23 33 0 0 chr11 4016152 4016182 -146767371 + AT_rich Low_complexity Low_complexity 1 30 0 1939 254 25 28 chr11 4016849 4017709 -146765844 - L1MA4 LINE L1 -375 5925 5066 2819 262 10 6 chr11 4017719 4018608 -146764945 + L1 LINE L1 3987 4879 -1267 823 308 42 35 chr11 4019360 4020140 -146763413 - L1M4 LINE L1 -960 5186 4395 405 0 0 0 chr11 4020140 4020185 -146763368 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 823 308 42 35 chr11 4020185 4020379 -146763174 - L1M4 LINE L1 -1751 4395 4204 333 0 0 0 chr11 4020479 4020516 -146763037 + (T)n Simple_repeat Simple_repeat 1 37 0 189 107 0 0 chr11 4020620 4020648 -146762905 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 188 317 0 0 chr11 4020741 4020801 -146762752 - MIR SINE MIR -197 65 6 643 221 14 27 chr11 4020854 4021059 -146762494 - L1MA7 LINE L1 -324 5976 5769 26 30 0 0 chr11 4021059 4021092 -146762461 + AT_rich Low_complexity Low_complexity 1 33 0 240 203 0 17 chr11 4021178 4021237 -146762316 - tRNA-Lys-AAA tRNA tRNA -13 63 6 203 59 0 29 chr11 4022272 4022306 -146761247 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 21 0 0 0 chr11 4023113 4023134 -146760419 + AT_rich Low_complexity Low_complexity 1 21 0 572 80 0 11 chr11 4024453 4024541 -146759012 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 254 295 95 0 chr11 4025262 4025357 -146758196 + FLAM_A SINE Alu 2 105 -28 788 88 7 0 chr11 4025437 4025573 -146757980 + (CA)n Simple_repeat Simple_repeat 2 138 0 27 49 0 0 chr11 4026768 4026809 -146756744 + AT_rich Low_complexity Low_complexity 1 41 0 1125 226 4 0 chr11 4027395 4027661 -146755892 - L1MA7 LINE L1 -523 5657 5391 27 0 0 0 chr11 4028235 4028262 -146755291 + AT_rich Low_complexity Low_complexity 1 27 0 252 131 0 66 chr11 4028786 4028847 -146754706 + (CAAAAA)n Simple_repeat Simple_repeat 2 58 0 416 184 125 53 chr11 4028998 4029150 -146754403 + FRAM SINE Alu 1 162 -14 296 231 0 0 chr11 4029233 4029298 -146754255 - tRNA-Ala-GCG tRNA tRNA -10 65 1 202 206 15 44 chr11 4029335 4029403 -146754150 + MIR3 SINE MIR 1 66 -142 243 224 0 0 chr11 4029647 4029723 -146753830 + CT-rich Low_complexity Low_complexity 2 77 0 207 0 0 0 chr11 4031565 4031588 -146751965 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 552 249 10 24 chr11 4032589 4032798 -146750755 + L1 LINE L1 2155 2360 -3786 771 174 0 0 chr11 4032915 4033059 -146750494 + G-rich Low_complexity Low_complexity 4 147 0 599 175 8 0 chr11 4033044 4033164 -146750389 + GA-rich Low_complexity Low_complexity 1 121 0 * 405 201 85 0 chr11 4033547 4033650 -146749903 + AluSg SINE Alu 1 103 -207 23 0 0 0 chr11 4035245 4035268 -146748285 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr11 4035694 4035719 -146747834 + (CTTG)n Simple_repeat Simple_repeat 2 26 0 239 120 0 40 chr11 4036534 4036584 -146746969 + (GAAA)n Simple_repeat Simple_repeat 4 51 0 668 174 90 30 chr11 4038508 4038675 -146744878 - FRAM SINE Alu 0 176 1 543 183 136 41 chr11 4040569 4040738 -146742815 + AluJo SINE Alu 120 304 -8 225 0 0 0 chr11 4043310 4043335 -146740218 + (A)n Simple_repeat Simple_repeat 1 25 0 260 200 142 58 chr11 4043356 4043476 -146740077 + FRAM SINE Alu 37 166 0 270 116 0 0 chr11 4043651 4043694 -146739859 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 525 215 92 25 chr11 4046655 4046882 -146736671 + FRAM SINE Alu 2 239 0 600 53 0 0 chr11 4046882 4046958 -146736595 + (GGA)n Simple_repeat Simple_repeat 3 78 0 861 120 0 0 chr11 4048338 4048471 -146735082 + (GGAA)n Simple_repeat Simple_repeat 1 133 0 22 0 0 0 chr11 4048485 4048507 -146735046 + AT_rich Low_complexity Low_complexity 1 22 0 257 292 81 19 chr11 4050157 4050318 -146733235 - Tigger1 DNA MER2_type -288 2130 1960 205 217 50 50 chr11 4051684 4051744 -146731809 + MIR SINE MIR 6 65 -197 26 0 0 0 chr11 4051827 4051853 -146731700 + AT_rich Low_complexity Low_complexity 1 26 0 458 215 133 19 chr11 4054325 4054483 -146729070 + FRAM SINE Alu 1 176 0 546 133 0 0 chr11 4054485 4054575 -146728978 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 488 202 115 66 chr11 4056815 4056998 -146726555 + AluJo SINE Alu 120 311 -1 215 214 0 0 chr11 4058201 4058243 -146725310 + GA-rich Low_complexity Low_complexity 3 44 0 925 286 53 29 chr11 4060028 4060541 -146723012 + HERVK14C LTR ERVK 2647 3171 -2774 366 268 9 23 chr11 4060731 4060906 -146722647 + HERVK14C LTR ERVK 3565 3833 -3410 21 0 0 0 chr11 4061134 4061155 -146722398 + AT_rich Low_complexity Low_complexity 1 21 0 302 296 15 15 chr11 4061269 4061401 -146722152 + HERVK14C LTR ERVK 4655 4786 -3330 267 311 0 0 chr11 4061800 4061874 -146721679 + L1 LINE L1 4072 4145 -2001 21 0 0 0 chr11 4062674 4062695 -146720858 + AT_rich Low_complexity Low_complexity 1 21 0 267 31 0 0 chr11 4064174 4064206 -146719347 + (T)n Simple_repeat Simple_repeat 1 32 0 183 327 55 45 chr11 4065880 4065990 -146717563 - L2 LINE L2 -6 3266 3156 260 231 29 29 chr11 4066484 4066588 -146716965 + L1P LINE L1 3696 3799 -2347 622 175 150 12 chr11 4068401 4068561 -146714992 - AluJo SINE Alu -10 302 121 225 154 0 0 chr11 4069079 4069118 -146714435 + (TA)n Simple_repeat Simple_repeat 2 40 0 256 208 0 26 chr11 4070648 4070725 -146712828 + (CAGAGA)n Simple_repeat Simple_repeat 6 80 0 560 129 10 0 chr11 4071387 4071488 -146712065 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 207 0 0 0 chr11 4072465 4072488 -146711065 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 182 103 0 26 chr11 4072498 4072537 -146711016 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 481 204 114 60 chr11 4074176 4074343 -146709210 - FRAM SINE Alu -1 175 1 1303 260 64 23 chr11 4075961 4076396 -146707157 - HERVR LTR ERV1 -2180 5212 4760 521 273 139 85 chr11 4076588 4077505 -146706048 - HERVR LTR ERV1 -3326 5652 3252 260 316 0 0 chr11 4077508 4077587 -146705966 - HERVR LTR ERV1 -3796 3596 3518 266 231 22 55 chr11 4077751 4077842 -146705711 - HERVR LTR ERV1 -5870 1522 1435 430 311 0 0 chr11 4078894 4079071 -146704482 - HERVR LTR ERV1 -6787 605 429 279 123 25 19 chr11 4080741 4080814 -146702739 - MLT2A1 LTR ERVL 0 444 380 380 0 0 98 chr11 4081331 4081392 -146702161 + (T)n Simple_repeat Simple_repeat 1 55 0 574 242 81 6 chr11 4083263 4083424 -146700129 + FRAM SINE Alu 1 173 -3 505 153 127 60 chr11 4084694 4084867 -146698686 + AluJo SINE Alu 126 285 -27 184 42 0 0 chr11 4084700 4084902 -146698651 + (CAAAA)n Simple_repeat Simple_repeat 2 203 0 7413 280 11 13 chr11 4085821 4089293 -146694260 + L1MA4 LINE L1 1432 4905 -1241 2139 281 14 10 chr11 4089551 4090586 -146692967 + L1MA4 LINE L1 4892 5930 -370 21 36 0 0 chr11 4092891 4092919 -146690634 + AT_rich Low_complexity Low_complexity 1 28 0 372 203 14 142 chr11 4092919 4093067 -146690486 - FLAM_C SINE Alu -3 130 2 2068 115 3 10 chr11 4093561 4093849 -146689704 - AluSx SINE Alu -26 286 1 33 25 0 0 chr11 4093962 4094002 -146689551 + AT_rich Low_complexity Low_complexity 1 40 0 194 309 0 29 chr11 4094028 4094096 -146689457 - MIR3 SINE MIR -142 66 1 639 39 0 0 chr11 4094460 4094538 -146689015 + (TTTC)n Simple_repeat Simple_repeat 2 79 0 8935 274 12 11 chr11 4095951 4100521 -146683032 + L1MA9 LINE L1 1991 6647 -381 231 308 0 0 chr11 4102837 4102902 -146680651 + C-rich Low_complexity Low_complexity 4 68 0 469 272 19 13 chr11 4103019 4103220 -146680333 - L1MA2 LINE L1 -221 5930 5713 401 250 1 15 chr11 4103105 4103251 -146680302 - L1ME2 LINE L1 -337 5825 5681 * 405 310 36 70 chr11 4103471 4103887 -146679666 - L1M2 LINE L1 -4630 2219 1818 409 179 105 11 chr11 4106240 4106335 -146677218 + AluSq/x SINE Alu 2 105 -208 276 30 0 0 chr11 4106382 4106415 -146677138 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 348 24 0 0 chr11 4106431 4106472 -146677081 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 297 0 0 0 chr11 4106733 4106766 -146676787 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1178 34 7 0 chr11 4106905 4107052 -146676501 + (TTTTC)n Simple_repeat Simple_repeat 2 149 0 23 33 0 0 chr11 4109386 4109416 -146674137 + AT_rich Low_complexity Low_complexity 1 30 0 500 139 146 49 chr11 4109955 4110099 -146673454 - FRAM SINE Alu -19 157 1 24 32 0 0 chr11 4110812 4110843 -146672710 + AT_rich Low_complexity Low_complexity 1 31 0 569 144 117 64 chr11 4111905 4112093 -146671460 - AluJo SINE Alu 0 312 115 427 127 60 217 chr11 4114690 4114876 -146668677 - FLAM_C SINE Alu 0 162 3 449 181 85 0 chr11 4116087 4116181 -146667372 - AluSg SINE Alu -207 103 2 26 64 0 0 chr11 4116697 4116744 -146666809 + AT_rich Low_complexity Low_complexity 1 47 0 29 28 0 0 chr11 4118248 4118284 -146665269 + AT_rich Low_complexity Low_complexity 1 36 0 266 194 65 93 chr11 4120629 4120768 -146662785 - AluSp SINE Alu -168 135 1 197 160 0 40 chr11 4124796 4124846 -146658707 + (TATG)n Simple_repeat Simple_repeat 1 48 0 21 36 0 0 chr11 4125304 4125332 -146658221 + AT_rich Low_complexity Low_complexity 1 28 0 1386 184 115 46 chr11 4227222 4227952 -146555601 - L1ME2 LINE L1 -552 5610 4837 24 53 0 0 chr11 4228002 4228040 -146555513 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr11 4228102 4228123 -146555430 + AT_rich Low_complexity Low_complexity 1 21 0 579 252 26 26 chr11 4228468 4228623 -146554930 - MIR SINE MIR -102 160 6 1081 153 0 0 chr11 4231311 4231487 -146552066 - L1MA2 LINE L1 -40 6264 6089 294 311 97 104 chr11 4231730 4232019 -146551534 + L2 LINE L2 2980 3266 -6 1695 231 37 85 chr11 4232243 4232840 -146550713 - L1M1 LINE L1 -6990 575 8 332 346 29 10 chr11 4232948 4233205 -146550348 - L1ME LINE L1 -315 5806 5545 2334 100 3 3 chr11 4233219 4233530 -146550023 - AluY SINE Alu 0 311 1 43 56 0 0 chr11 4233599 4233670 -146549883 + AT_rich Low_complexity Low_complexity 1 71 0 21 82 0 0 chr11 4233853 4233902 -146549651 + AT_rich Low_complexity Low_complexity 1 49 0 333 294 56 21 chr11 4233910 4234053 -146549500 - L1ME LINE L1 -740 5444 5297 1166 246 14 14 chr11 4234064 4234349 -146549204 + AluJo SINE Alu 11 295 -17 452 139 13 0 chr11 4234351 4234430 -146549123 - MADE1 DNA Mariner 0 80 1 14295 149 36 7 chr11 4234673 4236974 -146546579 + L1MA1 LINE L1 609 3007 -4558 2137 116 0 0 chr11 4236974 4237258 -146546295 + AluSp SINE Alu 3 286 -27 14295 149 36 7 chr11 4237258 4237634 -146545919 + L1MA1 LINE L1 3007 3371 -4194 1778 156 184 11 chr11 4237634 4237999 -146545554 - MSTA LTR MaLR 0 428 1 6414 163 5 12 chr11 4237999 4239161 -146544392 - MSTA-int LTR MaLR 0 1580 427 6931 161 133 6 chr11 4239221 4242029 -146541524 + L1MA1 LINE L1 4534 7721 0 24 0 0 0 chr11 4242773 4242797 -146540756 + AT_rich Low_complexity Low_complexity 1 24 0 756 114 93 0 chr11 4242797 4242937 -146540616 - L1MA5A LINE L1 0 6297 6145 1606 113 4 4 chr11 4245167 4245432 -146538121 - L1MA4A LINE L1 -1 6302 6038 208 338 0 0 chr11 4245465 4245542 -146538011 + L2 LINE L2 2175 2251 -1063 21 0 0 0 chr11 4245792 4245813 -146537740 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr11 4246023 4246061 -146537492 + AT_rich Low_complexity Low_complexity 1 38 0 31 26 0 0 chr11 4246213 4246251 -146537302 + AT_rich Low_complexity Low_complexity 1 38 0 902 263 121 52 chr11 4246759 4247818 -146535735 + L1MEc LINE L1 1737 2859 -3356 3905 167 27 36 chr11 4247887 4248715 -146534838 + L1MA9 LINE L1 5491 6310 -2 936 268 75 18 chr11 4248762 4249414 -146534139 + L1MEc LINE L1 3282 4034 -2181 37053 74 4 2 chr11 4249422 4254581 -146528972 + L1P LINE L1 11 5178 -968 21 0 0 0 chr11 4256531 4256552 -146527001 + AT_rich Low_complexity Low_complexity 1 21 0 2145 80 60 30 chr11 4256721 4257020 -146526533 + AluSx SINE Alu 1 308 -4 266 187 66 11 chr11 4257201 4257292 -146526261 + (TA)n Simple_repeat Simple_repeat 1 96 0 24 32 0 0 chr11 4257667 4257698 -146525855 + AT_rich Low_complexity Low_complexity 1 31 0 268 365 63 16 chr11 4257846 4258035 -146525518 - MIR3 SINE MIR -1 207 10 357 24 0 0 chr11 4258428 4258470 -146525083 + (TG)n Simple_repeat Simple_repeat 2 43 0 215 158 26 0 chr11 4258471 4258509 -146525044 + GA-rich Low_complexity Low_complexity 2 40 0 21 71 0 0 chr11 4258735 4258777 -146524776 + AT_rich Low_complexity Low_complexity 1 42 0 305 288 69 32 chr11 4258842 4259033 -146524520 - MIR3 SINE MIR -50 212 14 432 291 152 19 chr11 4259971 4260129 -146523424 - MER5A DNA MER1_type -1 188 10 330 286 70 60 chr11 4262051 4262250 -146521303 + MER58C DNA MER1_type 1 201 -14 300 377 41 8 chr11 4265201 4265323 -146518230 - L2 LINE L2 0 3272 3147 23 33 0 0 chr11 4266022 4266052 -146517501 + AT_rich Low_complexity Low_complexity 1 30 0 533 220 66 70 chr11 4266894 4267153 -146516400 + LTR41 LTR ERVL 25 282 -491 581 196 35 85 chr11 4267590 4267789 -146515764 + LTR41 LTR ERVL 578 766 -7 319 363 31 44 chr11 4269465 4269919 -146513634 + ERVL LTR ERVL 1728 2175 -3479 485 363 73 23 chr11 4269976 4270635 -146512918 + ERVL LTR ERVL 3496 4187 -1467 270 305 172 0 chr11 4272792 4272943 -146510610 - MIR SINE MIR 0 262 86 212 228 0 35 chr11 4273023 4273196 -146510357 + GA-rich Low_complexity Low_complexity 1 166 0 397 344 84 26 chr11 4273279 4273506 -146510047 - MIR SINE MIR -1 261 22 1916 167 6 6 chr11 4273795 4274106 -146509447 + AluJb SINE Alu 1 311 -1 196 349 63 68 chr11 4274165 4274802 -146508751 + L2 LINE L2 1993 2626 -688 21 0 0 0 chr11 4274829 4274850 -146508703 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr11 4275988 4276025 -146507528 + AT_rich Low_complexity Low_complexity 1 37 0 1580 213 10 19 chr11 4276061 4276371 -146507182 - AluJb SINE Alu -5 307 1 315 327 31 38 chr11 4276390 4276549 -146507004 - HAL1b LINE L1 -460 888 731 34 0 0 0 chr11 4276572 4276606 -146506947 + AT_rich Low_complexity Low_complexity 1 34 0 2124 78 0 25 chr11 4276697 4276978 -146506575 + AluY SINE Alu 35 308 -3 2232 202 47 2 chr11 4277174 4277703 -146505850 + L1 LINE L1 2500 3052 -3094 223 245 20 0 chr11 4277787 4277836 -146505717 - MER5A DNA MER1_type -83 106 57 4155 90 17 80 chr11 4278127 4278836 -146504717 + MER4A LTR ERV1 1 664 0 629 251 67 17 chr11 4279241 4279480 -146504073 - L1ME3 LINE L1 -329 5833 5583 525 297 0 47 chr11 4279488 4279744 -146503809 - L1ME3 LINE L1 -627 5537 5294 585 286 65 21 chr11 4279759 4280144 -146503409 - L1ME3 LINE L1 -895 5251 4850 775 130 7 43 chr11 4280147 4280305 -146503248 + FLAM_C SINE Alu 1 133 0 561 138 0 0 chr11 4280511 4280591 -146502962 + AluSq SINE Alu 143 222 -91 248 162 0 59 chr11 4280640 4280708 -146502845 + (CATATA)n Simple_repeat Simple_repeat 1 64 0 863 187 35 111 chr11 4280721 4281319 -146502234 + MER4C LTR ERV1 5 455 -10 300 106 0 45 chr11 4281388 4281454 -146502099 + (CATATA)n Simple_repeat Simple_repeat 5 67 0 252 333 0 0 chr11 4281582 4281663 -146501890 + L2 LINE L2 1199 1279 -2035 2082 140 6 17 chr11 4282125 4282474 -146501079 + L1PA15 LINE L1 5817 6161 -4 242 267 39 17 chr11 4285400 4285531 -146498022 + MIR SINE MIR 16 147 -62 1760 202 0 3 chr11 4285568 4285870 -146497683 + AluJo SINE Alu 1 301 -11 3516 57 0 2 chr11 4285906 4286344 -146497209 - L1PA6 LINE L1 -13 6141 5705 1543 64 0 0 chr11 4286344 4286546 -146497007 + L1PA6 LINE L1 5502 5703 -451 33 25 0 0 chr11 4286582 4286622 -146496931 + AT_rich Low_complexity Low_complexity 1 40 0 4188 54 0 0 chr11 4287010 4287567 -146495986 + L1P LINE L1 2211 2767 -3379 187 255 78 20 chr11 4288030 4288081 -146495472 - L2 LINE L2 -16 3297 3244 733 274 18 18 chr11 4288126 4288349 -146495204 + MER58A DNA MER1_type 1 223 -1 21 0 0 0 chr11 4288374 4288395 -146495158 + AT_rich Low_complexity Low_complexity 1 21 0 1889 162 7 3 chr11 4288687 4288856 -146494697 - AluSx SINE Alu -12 300 128 192 40 0 0 chr11 4288856 4288881 -146494672 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1889 162 7 3 chr11 4288881 4289008 -146494545 - AluSx SINE Alu -184 128 3 31 88 0 0 chr11 4290997 4291077 -146492476 + AT_rich Low_complexity Low_complexity 1 80 0 246 313 25 0 chr11 4291330 4291410 -146492143 - L2 LINE L2 -8 3305 3224 2242 144 47 43 chr11 4291643 4291836 -146491717 + MSTB LTR MaLR 1 192 -234 1907 119 7 7 chr11 4291836 4292156 -146491397 + AluSc SINE Alu 3 322 0 2242 144 47 43 chr11 4292156 4292383 -146491170 + MSTB LTR MaLR 192 424 -2 8219 179 13 55 chr11 4292385 4294101 -146489452 + MSTB-int LTR MaLR 1 1645 -6 2195 153 52 41 chr11 4294106 4294525 -146489028 + MSTB LTR MaLR 1 424 -2 25 0 0 0 chr11 4295954 4295979 -146487574 + AT_rich Low_complexity Low_complexity 1 25 0 279 282 70 49 chr11 4296479 4296621 -146486932 + L2 LINE L2 3169 3313 0 200 356 77 66 chr11 4297133 4297498 -146486055 - L2 LINE L2 -15 3257 2889 414 57 0 0 chr11 4297805 4297858 -146485695 + (TC)n Simple_repeat Simple_repeat 2 54 0 516 283 40 29 chr11 4301782 4301955 -146481598 - MIR SINE MIR -42 220 46 260 304 74 30 chr11 4302742 4302877 -146480676 + L2 LINE L2 3167 3307 -6 2131 93 0 30 chr11 4303568 4303870 -146479683 - AluSg SINE Alu -8 302 10 224 383 14 46 chr11 4303999 4304216 -146479337 + L2 LINE L2 2733 2942 -372 296 359 0 10 chr11 4307209 4307312 -146476241 + L2 LINE L2 1121 1222 -2092 26 0 0 0 chr11 4307314 4307340 -146476213 + AT_rich Low_complexity Low_complexity 1 26 0 233 164 0 18 chr11 4307728 4307783 -146475770 + CT-rich Low_complexity Low_complexity 1 54 0 221 167 0 0 chr11 4307787 4307829 -146475724 + (TAG)n Simple_repeat Simple_repeat 2 43 0 378 304 65 42 chr11 4308421 4308589 -146474964 + L1M4b LINE L1 1238 1409 -5450 5187 133 5 10 chr11 4308597 4309541 -146474012 + L1PA11 LINE L1 4501 5435 -739 2239 120 7 0 chr11 4309541 4309842 -146473711 - AluSg SINE Alu -7 303 1 5187 133 5 10 chr11 4309842 4310397 -146473156 + L1PA11 LINE L1 5435 5992 -182 9511 56 0 4 chr11 4310397 4312388 -146471165 + L1PA5 LINE L1 4166 6154 0 339 289 57 54 chr11 4312388 4312738 -146470815 + L1M4b LINE L1 2518 2868 -4270 1045 334 93 35 chr11 4312763 4313527 -146470026 - L2 LINE L2 -806 2508 1701 558 269 27 32 chr11 4314169 4314355 -146469198 + MIR SINE MIR 78 262 0 22 0 0 0 chr11 4315711 4315733 -146467820 + AT_rich Low_complexity Low_complexity 1 22 0 562 236 55 18 chr11 4315862 4316027 -146467526 - MIR SINE MIR -14 248 78 218 203 31 31 chr11 4316082 4316146 -146467407 + (CAGAGA)n Simple_repeat Simple_repeat 4 67 0 737 249 53 0 chr11 4316259 4316448 -146467105 + MER3 DNA MER1_type 9 207 -2 275 85 21 0 chr11 4316695 4316742 -146466811 + (TG)n Simple_repeat Simple_repeat 1 48 0 1662 230 38 38 chr11 4317486 4317990 -146465563 - MLT1D LTR MaLR -1 504 1 772 239 29 34 chr11 4319714 4319923 -146463630 + MER3 DNA MER1_type 1 208 -1 1185 221 46 57 chr11 4320038 4320405 -146463148 - L1ME1 LINE L1 -19 6147 5785 22 0 0 0 chr11 4320518 4320540 -146463013 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 4320574 4320595 -146462958 + AT_rich Low_complexity Low_complexity 1 21 0 218 301 88 44 chr11 4320717 4320830 -146462723 + L2 LINE L2 3195 3312 -1 2041 128 0 0 chr11 4321107 4321389 -146462164 + AluSg SINE Alu 1 282 -28 447 245 128 41 chr11 4321678 4321874 -146461679 + MIR SINE MIR 49 261 -1 225 341 101 8 chr11 4323823 4323952 -146459601 + MIR SINE MIR 26 166 -96 21 0 0 0 chr11 4325188 4325209 -146458344 + AT_rich Low_complexity Low_complexity 1 21 0 339 260 91 67 chr11 4326859 4327067 -146456486 + MER46C DNA MER2_type 1 213 -125 1501 167 70 56 chr11 4327478 4327820 -146455733 + MER7A DNA MER2_type 2 346 0 21 0 0 0 chr11 4328418 4328439 -146455114 + AT_rich Low_complexity Low_complexity 1 21 0 438 361 17 22 chr11 4328483 4328713 -146454840 + MIR SINE MIR 12 240 -22 189 380 67 36 chr11 4329970 4330165 -146453388 - L2 LINE L2 -33 3239 3039 1535 181 78 6 chr11 4331395 4331715 -146451838 + MER2 DNA MER2_type 2 344 0 423 0 0 0 chr11 4333209 4333256 -146450297 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1983 198 70 5 chr11 4333368 4333768 -146449785 - MSTB LTR MaLR 0 426 1 31 68 0 0 chr11 4335539 4335598 -146447955 + AT_rich Low_complexity Low_complexity 1 59 0 318 311 228 14 chr11 4335941 4336160 -146447393 + L2 LINE L2 2872 3137 -176 678 158 7 82 chr11 4336365 4336511 -146447042 + FLAM_C SINE Alu 6 140 -3 332 257 178 0 chr11 4336748 4336849 -146446704 - MIR SINE MIR -40 222 104 21 0 0 0 chr11 4336946 4336967 -146446586 + AT_rich Low_complexity Low_complexity 1 21 0 1373 175 51 25 chr11 4338195 4338469 -146445084 + AluJo SINE Alu 1 281 -31 691 280 86 76 chr11 4339343 4339653 -146443900 - L1MEc LINE L1 -3586 2629 2323 291 28 0 0 chr11 4339653 4339689 -146443864 + (CA)n Simple_repeat Simple_repeat 2 37 0 2178 118 3 0 chr11 4339694 4339991 -146443562 - AluSc SINE Alu -11 298 1 691 280 86 76 chr11 4339991 4340974 -146442579 - L1MEc LINE L1 -3895 2320 1366 315 0 0 0 chr11 4341381 4341416 -146442137 + (TG)n Simple_repeat Simple_repeat 2 36 0 527 361 51 16 chr11 4341428 4341683 -146441870 - LTR16A LTR ERVL -84 366 103 327 338 20 35 chr11 4342127 4342325 -146441228 - ERVL LTR ERVL -609 5155 4961 37 0 0 0 chr11 4342325 4342362 -146441191 + AT_rich Low_complexity Low_complexity 1 37 0 520 405 57 17 chr11 4342768 4343629 -146439924 - ERVL LTR ERVL -1195 4459 3565 2357 73 0 7 chr11 4343689 4343989 -146439564 - AluY SINE Alu -13 298 1 369 304 22 44 chr11 4344437 4344618 -146438935 - ERVL LTR ERVL -2429 2567 2391 1258 142 28 5 chr11 4344874 4345086 -146438467 - L1PA16 LINE L1 -234 5932 5716 236 121 61 15 chr11 4345085 4345151 -146438402 - L1M LINE L1 -2455 5330 5262 * 33 56 0 0 chr11 4345439 4345493 -146438060 + AT_rich Low_complexity Low_complexity 1 54 0 25 0 0 0 chr11 4345638 4345663 -146437890 + AT_rich Low_complexity Low_complexity 1 25 0 369 273 117 0 chr11 4346719 4346847 -146436706 - MIR SINE MIR -80 182 40 272 319 122 30 chr11 4346917 4347212 -146436341 + L2 LINE L2 1979 2300 -1014 189 415 12 0 chr11 4347345 4347427 -146436126 - L2 LINE L2 -3 3269 3187 36 40 0 0 chr11 4348164 4348214 -146435339 + AT_rich Low_complexity Low_complexity 1 50 0 245 211 141 0 chr11 4349020 4349091 -146434462 + MIR SINE MIR 124 204 -58 2211 103 3 19 chr11 4349338 4349648 -146433905 + AluSq SINE Alu 1 305 -8 229 303 0 13 chr11 4349674 4349750 -146433803 - L1ME LINE L1 -466 5655 5581 192 282 12 82 chr11 4351057 4351142 -146432411 - L2 LINE L2 -213 3059 2981 1626 272 22 20 chr11 4352512 4353016 -146430537 - MLT1D LTR MaLR 0 505 1 273 215 78 112 chr11 4353125 4353330 -146430223 + L2 LINE L2 3105 3302 -11 228 241 138 0 chr11 4353904 4353962 -146429591 + L2 LINE L2 3145 3210 -62 790 297 114 25 chr11 4354067 4354471 -146429082 + L2 LINE L2 2862 3301 -12 287 313 73 13 chr11 4354684 4354834 -146428719 - MIR SINE MIR -34 228 70 2466 183 122 7 chr11 4355160 4355728 -146427825 + LTR24C LTR ERV1 1 633 -2 226 298 37 106 chr11 4356275 4356463 -146427090 + L2 LINE L2 2898 3072 -200 781 291 65 58 chr11 4356632 4357061 -146426492 - MLT1G1 LTR MaLR -163 432 1 1022 86 50 0 chr11 4358568 4358707 -146424846 + AluY SINE Alu 1 146 -165 401 228 134 13 chr11 4358725 4358874 -146424679 + LTR33 LTR ERVL 205 371 -150 268 283 11 0 chr11 4358991 4359083 -146424470 + T-rich Low_complexity Low_complexity 4 96 0 352 298 50 16 chr11 4359584 4359705 -146423848 + L2 LINE L2 3148 3272 0 236 376 30 0 chr11 4359744 4359877 -146423676 - MIR SINE MIR -74 188 52 443 314 15 7 chr11 4360511 4360648 -146422905 - MIR SINE MIR -102 160 23 309 89 0 0 chr11 4363783 4363828 -146419725 + (TAAAA)n Simple_repeat Simple_repeat 5 49 0 23 33 0 0 chr11 4364219 4364249 -146419304 + AT_rich Low_complexity Low_complexity 1 30 0 1674 145 25 7 chr11 4364266 4364549 -146419004 - L1PB4 LINE L1 -7 6149 5862 190 358 119 50 chr11 4366582 4366800 -146416753 + MIR SINE MIR 20 252 -10 234 0 0 0 chr11 4368089 4368115 -146415438 + (A)n Simple_repeat Simple_repeat 1 26 0 348 265 122 0 chr11 4369374 4369472 -146414081 + MER81 DNA DNA 5 114 0 613 259 29 0 chr11 4369486 4369625 -146413928 + MLT1G1 LTR MaLR 2 144 -451 285 189 0 0 chr11 4369644 4369697 -146413856 - L1MA6 LINE L1 -140 6160 6108 487 184 0 0 chr11 4369702 4369800 -146413753 + L1MA6 LINE L1 6203 6300 0 913 269 170 14 chr11 4369826 4370261 -146413292 - MLT1D LTR MaLR 0 505 3 943 284 105 20 chr11 4370298 4370603 -146412950 + MLT1G1 LTR MaLR 223 501 -94 2092 122 30 43 chr11 4370603 4370971 -146412582 - THE1B LTR MaLR -1 363 1 11325 106 6 1 chr11 4370971 4372543 -146411010 - THE1B-int LTR MaLR 0 1580 1 2114 126 24 48 chr11 4372543 4372916 -146410637 - THE1B LTR MaLR 0 364 1 943 284 105 20 chr11 4372916 4372950 -146410603 + MLT1G1 LTR MaLR 500 593 -2 25 31 0 0 chr11 4372953 4372985 -146410568 + AT_rich Low_complexity Low_complexity 1 32 0 1078 234 97 9 chr11 4373015 4373365 -146410188 - L1ME1 LINE L1 -5 6161 5781 310 271 0 0 chr11 4373367 4373474 -146410079 + (TA)n Simple_repeat Simple_repeat 1 107 0 721 211 108 18 chr11 4373495 4373718 -146409835 - L1ME1 LINE L1 -422 5744 5502 1322 302 65 20 chr11 4373766 4374454 -146409099 + L1ME3A LINE L1 5292 6010 -160 1104 283 164 50 chr11 4374633 4375953 -146407600 + L1ME3A LINE L1 3475 4944 -1202 1837 270 65 42 chr11 4375991 4376828 -146406725 + L1ME3A LINE L1 5306 6161 -9 184 400 0 0 chr11 4376950 4377030 -146406523 + MIR SINE MIR 48 127 -135 301 320 33 33 chr11 4377111 4377261 -146406292 - MIR SINE MIR -95 167 18 4214 173 9 9 chr11 4377355 4377370 -146406183 + L1PB4 LINE L1 5394 5408 -748 1800 179 124 16 chr11 4377370 4377756 -146405797 - MSTA LTR MaLR 0 428 1 4214 173 9 9 chr11 4377756 4378499 -146405054 + L1PB4 LINE L1 5407 6152 -4 207 100 0 0 chr11 4378506 4378536 -146405017 + (TC)n Simple_repeat Simple_repeat 2 31 0 1334 135 0 34 chr11 4378536 4378773 -146404780 + MSTB1 LTR MaLR 204 432 0 6717 132 17 2 chr11 4378822 4380669 -146402884 + L1PA10 LINE L1 4304 6164 -4 979 265 177 38 chr11 4380726 4381179 -146402374 - MLT1E LTR MaLR -77 516 1 231 328 138 45 chr11 4383015 4383412 -146400141 + L2 LINE L2 1551 1984 -1330 2314 84 7 0 chr11 4383437 4383735 -146399818 - AluSc SINE Alu -9 300 1 490 347 44 28 chr11 4385555 4385803 -146397750 - MIR SINE MIR -6 256 5 4100 77 12 2 chr11 4386386 4386973 -146396580 - L1P LINE L1 -2286 3860 3268 218 200 0 0 chr11 4388968 4389013 -146394540 + A-rich Low_complexity Low_complexity 2 46 0 292 375 86 36 chr11 4389333 4389637 -146393916 - L3 LINE CR1 -5 1572 1254 264 364 40 7 chr11 4389629 4389780 -146393773 + L2 LINE L2 3149 3304 -9 * 31 0 0 0 chr11 4390576 4390607 -146392946 + AT_rich Low_complexity Low_complexity 1 31 0 277 274 48 25 chr11 4391458 4391661 -146391892 - L1M LINE L1 -766 5380 5188 426 267 185 20 chr11 4392002 4392148 -146391405 - MER5A DNA MER1_type -2 187 18 2308 89 0 22 chr11 4392322 4392637 -146390916 + AluSc SINE Alu 2 309 0 194 91 30 0 chr11 4392811 4392844 -146390709 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 308 337 56 59 chr11 4392888 4393194 -146390359 - L1M4 LINE L1 -1973 4173 3869 968 201 23 27 chr11 4394022 4394241 -146389312 - MER20 DNA MER1_type -1 218 1 287 281 61 35 chr11 4394805 4394919 -146388634 + MIR SINE MIR 33 149 -113 199 319 85 32 chr11 4395465 4395559 -146387994 - L2 LINE L2 0 3272 3174 411 198 0 23 chr11 4396139 4396225 -146387328 + L1PA16 LINE L1 5978 6061 -105 21 0 0 0 chr11 4398866 4398887 -146384666 + AT_rich Low_complexity Low_complexity 1 21 0 246 371 29 0 chr11 4398894 4398999 -146384554 - MIR SINE MIR -108 154 47 243 176 139 46 chr11 4399381 4399489 -146384064 + LTR38B LTR ERV1 1 118 -492 1803 111 19 8 chr11 4399602 4399863 -146383690 - AluSx SINE Alu -9 303 40 300 290 41 89 chr11 4400003 4400324 -146383229 + LTR38 LTR ERV1 291 556 0 317 89 40 40 chr11 4400445 4400546 -146383007 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 2560 46 0 0 chr11 4400879 4401184 -146382369 + AluY SINE Alu 1 305 -6 6806 165 29 26 chr11 4402525 4403769 -146379784 - Ricksha_b DNA DNA -7 1247 1 210 71 95 0 chr11 4403945 4403987 -146379566 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 3860 83 2 0 chr11 4404992 4405524 -146378029 + L1P LINE L1 4329 4861 -1285 273 192 0 0 chr11 4405543 4405595 -146377958 + LTR49-int LTR ERV1 4994 5045 -1286 3540 126 16 3 chr11 4405595 4406416 -146377137 - L1PA11 LINE L1 -579 5595 4769 4093 118 2 5 chr11 4406416 4407011 -146376542 + L1PA11 LINE L1 5565 6163 -11 976 285 30 65 chr11 4407018 4407512 -146376041 + LTR49-int LTR ERV1 3764 4240 -696 1358 218 38 50 chr11 4407525 4407943 -146375610 + LTR37A LTR ERV1 4 416 -10 1393 214 13 105 chr11 4408011 4408535 -146375018 - MER31A LTR ERV1 -9 476 1 1355 210 68 87 chr11 4408658 4409129 -146374424 - MER31A-int LTR ERV1 -100 4836 4375 3314 205 53 13 chr11 4409205 4409999 -146373554 - MER31A-int LTR ERV1 -727 4209 3384 1333 226 57 17 chr11 4410000 4410402 -146373151 - MER31A-int LTR ERV1 -1763 3173 2756 3123 215 56 77 chr11 4410500 4412469 -146371084 - MER31A-int LTR ERV1 -2372 2564 654 314 316 57 60 chr11 4412472 4412807 -146370746 - L1M2b LINE L1 -5414 1795 1462 661 321 5 5 chr11 4412861 4413057 -146370496 - MER31A-int LTR ERV1 -4524 412 217 405 170 85 32 chr11 4413064 4413158 -146370395 - MER31A-int LTR ERV1 -4670 266 168 610 209 102 53 chr11 4413346 4413566 -146369987 - MER31A LTR ERV1 -2 483 253 1922 180 43 38 chr11 4413566 4413988 -146369565 - MSTB1 LTR MaLR 0 432 9 687 237 73 78 chr11 4413994 4414239 -146369314 - MER31B LTR ERV1 -222 244 1 22 0 0 0 chr11 4414353 4414375 -146369178 + AT_rich Low_complexity Low_complexity 1 22 0 2916 66 5 0 chr11 4416665 4417045 -146366508 + L1PA10 LINE L1 5776 6157 -11 888 339 37 15 chr11 4419094 4419495 -146364058 - LTR16A LTR ERVL 0 450 41 1852 164 24 34 chr11 4419816 4420195 -146363358 + THE1C LTR MaLR 1 375 0 861 324 39 6 chr11 4420719 4421055 -146362498 + HERV16 LTR ERVL 736 1082 -3914 325 314 80 5 chr11 4421056 4421244 -146362309 + HERV16 LTR ERVL 1602 1803 -3193 409 319 86 36 chr11 4421289 4421901 -146361652 + HERV16 LTR ERVL 1906 2677 -2319 23 54 0 0 chr11 4422420 4422457 -146361096 + AT_rich Low_complexity Low_complexity 1 37 0 435 287 8 59 chr11 4422910 4423147 -146360406 + HAL1 LINE L1 2277 2501 -6 4793 149 107 70 chr11 4423182 4424366 -146359187 - Tigger3b DNA MER2_type -2 1229 2 241 316 13 13 chr11 4424407 4424486 -146359067 + MIR SINE MIR 63 141 -121 24 0 0 0 chr11 4424830 4424854 -146358699 + AT_rich Low_complexity Low_complexity 1 24 0 608 219 50 60 chr11 4424940 4425141 -146358412 - MIR SINE MIR -1 261 63 256 330 29 0 chr11 4426916 4427019 -146356534 - MIR SINE MIR -10 252 147 216 0 0 0 chr11 4427410 4427434 -146356119 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 204 193 60 133 chr11 4428424 4428507 -146355046 + L2 LINE L2 3237 3313 0 262 247 123 25 chr11 4429014 4429095 -146354458 - MIR SINE MIR -92 116 28 265 254 41 75 chr11 4429645 4429784 -146353769 + MIR SINE MIR 9 151 -57 23 0 0 0 chr11 4430251 4430274 -146353279 + AT_rich Low_complexity Low_complexity 1 23 0 339 0 0 41 chr11 4430780 4430829 -146352724 - L1PA3 LINE L1 0 6155 6109 250 379 110 9 chr11 4431866 4432193 -146351360 + LTR16A LTR ERVL 1 360 -90 24 0 0 0 chr11 4432458 4432482 -146351071 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 4432534 4432562 -146350991 + AT_rich Low_complexity Low_complexity 1 28 0 28 71 0 0 chr11 4433138 4433194 -146350359 + AT_rich Low_complexity Low_complexity 1 56 0 183 255 122 61 chr11 4433544 4433642 -146349911 - L3 LINE CR1 -1390 187 84 560 279 141 21 chr11 4433871 4434346 -146349207 + MLT1G1 LTR MaLR 22 578 -17 241 333 70 0 chr11 4434872 4434986 -146348567 - L2 LINE L2 0 3313 3192 279 53 70 0 chr11 4435129 4435186 -146348367 + T-rich Low_complexity Low_complexity 2 62 0 18854 29 0 0 chr11 4435189 4438212 -146345341 - L1PA2 LINE L1 -2 6153 3131 460 125 11 11 chr11 4439187 4439275 -146344278 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 197 128 0 26 chr11 4439379 4439418 -146344135 + (GAAA)n Simple_repeat Simple_repeat 4 41 0 23 0 0 0 chr11 4440701 4440724 -146342829 + AT_rich Low_complexity Low_complexity 1 23 0 489 255 163 0 chr11 4440812 4440965 -146342588 + MER5A DNA MER1_type 12 189 0 276 224 250 0 chr11 4441328 4441444 -146342109 + MIR SINE MIR 117 261 -1 271 180 0 0 chr11 4441727 4441788 -146341765 - L1MA8 LINE L1 -4 6287 6227 22 0 0 0 chr11 4444928 4444950 -146338603 + AT_rich Low_complexity Low_complexity 1 22 0 423 83 0 0 chr11 4447289 4447349 -146336204 + (TG)n Simple_repeat Simple_repeat 1 60 0 1284 226 51 0 chr11 4448913 4449188 -146334365 + AluJo SINE Alu 10 298 -14 381 122 0 37 chr11 4449188 4449270 -146334283 + (GGA)n Simple_repeat Simple_repeat 1 79 0 25 31 0 0 chr11 4449463 4449495 -146334058 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr11 4449600 4449623 -146333930 + AT_rich Low_complexity Low_complexity 1 23 0 1381 170 49 61 chr11 4449708 4450037 -146333516 - MER44D DNA MER2_type 0 609 15 21 36 0 0 chr11 4450150 4450178 -146333375 + AT_rich Low_complexity Low_complexity 1 28 0 566 290 82 34 chr11 4450259 4450871 -146332682 + L1M4 LINE L1 4408 5047 -1099 * 3354 181 40 14 chr11 4450865 4451560 -146331993 + L1MA7 LINE L1 5491 6203 -88 409 141 76 0 chr11 4451663 4451755 -146331798 + L1MA7 LINE L1 6186 6284 -7 280 295 147 8 chr11 4451780 4451909 -146331644 - MIR SINE MIR -31 231 85 546 260 39 0 chr11 4452085 4452239 -146331314 + L1MCb LINE L1 570 729 -5316 1508 164 75 4 chr11 4452258 4452538 -146331015 - MER7A DNA MER2_type -1 345 48 1712 99 0 0 chr11 4452551 4452784 -146330769 - L1PA10 LINE L1 -168 6000 5768 1309 163 9 70 chr11 4452884 4453228 -146330325 + Ricksha DNA DNA 2922 3244 -7 2606 49 0 0 chr11 4454569 4454877 -146328676 - AluY SINE Alu -3 308 1 317 89 40 40 chr11 4455210 4455311 -146328242 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 300 292 40 86 chr11 4455432 4455753 -146327800 - LTR38 LTR ERV1 0 564 291 1826 111 19 8 chr11 4455891 4456152 -146327401 + AluSx SINE Alu 40 303 -9 239 176 139 46 chr11 4456265 4456373 -146327180 - LTR38B LTR ERV1 -492 118 1 240 371 29 0 chr11 4456755 4456860 -146326693 + MIR SINE MIR 47 154 -108 21 0 0 0 chr11 4456867 4456888 -146326665 + AT_rich Low_complexity Low_complexity 1 21 0 362 205 0 12 chr11 4459532 4459615 -146323938 - L1PA16 LINE L1 -105 6061 5980 2166 110 0 7 chr11 4459770 4460062 -146323491 - AluSx SINE Alu -22 290 1 232 385 111 26 chr11 4460086 4460554 -146322999 + L2 LINE L2 2804 3311 -2 299 259 132 63 chr11 4461021 4461210 -146322343 - MIR SINE MIR -28 234 33 21 36 0 0 chr11 4461624 4461652 -146321901 + AT_rich Low_complexity Low_complexity 1 28 0 1020 194 17 0 chr11 4462265 4462445 -146321108 - AluJb SINE Alu -1 311 129 2433 86 0 6 chr11 4462447 4462761 -146320792 - AluSx SINE Alu 0 312 1 648 70 0 0 chr11 4462831 4462917 -146320636 + (TC)n Simple_repeat Simple_repeat 2 87 0 294 29 0 0 chr11 4462918 4462953 -146320600 - AluSp/q SINE Alu -21 282 248 1094 121 6 6 chr11 4462953 4463110 -146320443 - AluSx SINE Alu -155 157 1 204 182 0 0 chr11 4463156 4463200 -146320353 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 2562 45 3 0 chr11 4463336 4463645 -146319908 - AluY SINE Alu -1 310 1 724 146 48 24 chr11 4464314 4464479 -146319074 + ORSL DNA AcHobo 91 259 -16 23 0 0 0 chr11 4466205 4466228 -146317325 + AT_rich Low_complexity Low_complexity 1 23 0 400 279 79 57 chr11 4468752 4469017 -146314536 + L1M4 LINE L1 3198 3468 -2678 1331 297 66 30 chr11 4469175 4470232 -146313321 + L1M4 LINE L1 3588 4682 -1464 559 203 63 13 chr11 4471824 4471982 -146311571 + L1MA9 LINE L1 5939 6104 -208 341 161 0 0 chr11 4472110 4472166 -146311387 + L1MA9 LINE L1 6104 6159 -153 228 111 0 0 chr11 4472222 4472258 -146311295 + (TATATG)n Simple_repeat Simple_repeat 5 40 0 186 209 0 0 chr11 4472584 4472627 -146310926 + T-rich Low_complexity Low_complexity 1 43 0 485 71 14 0 chr11 4472630 4472700 -146310853 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 224 130 22 0 chr11 4472703 4472749 -146310804 + CT-rich Low_complexity Low_complexity 2 48 0 456 77 0 0 chr11 4474117 4474182 -146309371 + (CA)n Simple_repeat Simple_repeat 1 65 0 30 27 0 0 chr11 4474366 4474403 -146309150 + AT_rich Low_complexity Low_complexity 1 37 0 333 279 90 23 chr11 4476324 4476574 -146306979 - LTR36 LTR ERV1 0 611 345 2113 131 0 0 chr11 4476658 4476963 -146306590 - AluSx SINE Alu -7 305 1 242 188 14 14 chr11 4477037 4477106 -146306447 - LTR36 LTR ERV1 -472 139 71 728 283 61 5 chr11 4477862 4478060 -146305493 - MER63A DNA MER1_type -1 209 1 1017 301 71 31 chr11 4478206 4478628 -146304925 + LTR16A LTR ERVL 1 439 -11 2354 201 126 24 chr11 4478707 4479365 -146304188 - MER50 LTR ERV1 0 734 10 310 204 121 25 chr11 4479542 4479699 -146303854 - L1M4 LINE L1 -897 5137 4966 316 172 60 48 chr11 4479702 4479829 -146303724 - LTR41 LTR ERVL -2 793 650 522 258 26 13 chr11 4480354 4480509 -146303044 - LTR41 LTR ERVL -616 157 1 2009 140 66 3 chr11 4480744 4481108 -146302445 + LTR34 LTR ERV1 313 699 0 336 223 39 31 chr11 4481177 4481307 -146302246 - L1M4 LINE L1 -1302 4732 4602 2171 137 5 39 chr11 4481355 4481743 -146301810 + THE1C LTR MaLR 1 375 0 2274 124 3 17 chr11 4481768 4482114 -146301439 + THE1C-int LTR MaLR 1240 1580 0 1745 162 90 9 chr11 4482116 4482461 -146301092 + THE1C LTR MaLR 3 375 0 330 303 60 0 chr11 4482555 4482740 -146300813 - L1M4 LINE L1 -1594 4440 4245 4023 137 32 33 chr11 4483007 4483735 -146299818 - LTR8A LTR ERV1 0 727 1 186 71 0 0 chr11 4483953 4483981 -146299572 + (CA)n Simple_repeat Simple_repeat 1 28 0 509 332 26 5 chr11 4484673 4484866 -146298687 - MIR SINE MIR -46 216 20 2419 84 0 3 chr11 4484871 4485182 -146298371 - AluSg SINE Alu 0 310 1 796 246 47 9 chr11 4485303 4485514 -146298039 - MER20 DNA MER1_type 0 219 1 218 336 199 0 chr11 4487960 4488106 -146295447 - MIR SINE MIR -21 241 67 235 370 71 28 chr11 4489086 4489297 -146294256 + L2 LINE L2 2460 2679 -635 225 345 48 12 chr11 4489600 4489684 -146293869 + L2 LINE L2 2998 3084 -188 763 165 0 0 chr11 4489851 4489966 -146293587 + FLAM_A SINE Alu 9 123 -19 1828 144 0 0 chr11 4489970 4490227 -146293326 + AluSc SINE Alu 22 278 -31 345 160 0 0 chr11 4490177 4490227 -146293326 + AluSc SINE Alu 229 305 0 211 37 0 0 chr11 4490227 4490254 -146293299 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 262 356 20 45 chr11 4492293 4492495 -146291058 + L2 LINE L2 1767 1963 -1351 2904 201 86 24 chr11 4492503 4493293 -146290260 - L1MC3 LINE L1 0 7785 6947 2209 235 95 74 chr11 4493304 4494212 -146289341 - L1MEc LINE L1 -2646 3736 2789 1536 181 3 45 chr11 4494212 4494536 -146289017 + AluJo SINE Alu 3 314 0 2209 235 95 74 chr11 4494536 4494893 -146288660 - L1MEc LINE L1 -3593 2789 2441 4021 206 40 6 chr11 4495129 4495192 -146288361 - L1MA9 LINE L1 -75 6237 6178 230 0 33 0 chr11 4495192 4495222 -146288331 + (TG)n Simple_repeat Simple_repeat 2 32 0 4021 206 40 6 chr11 4495222 4496027 -146287526 - L1MA9 LINE L1 -134 6178 5339 2772 296 22 10 chr11 4496020 4497914 -146285639 - L1M4 LINE L1 -4401 1634 12 * 323 253 90 24 chr11 4497937 4498232 -146285321 - L1MEc LINE L1 -3953 2471 2110 5052 164 35 9 chr11 4498235 4499178 -146284375 - Tigger1 DNA MER2_type -6 2412 1446 8614 244 24 27 chr11 4499178 4504839 -146278714 + L1PA12 LINE L1 1 5113 -2471 2008 148 0 0 chr11 4504839 4505129 -146278424 + AluSx SINE Alu 1 290 -22 566 299 87 71 chr11 4505289 4505542 -146278011 - L1M4 LINE L1 -1505 4641 4394 3160 143 12 0 chr11 4505542 4506053 -146277500 - L1PA15 LINE L1 -4 6161 5645 3060 178 18 5 chr11 4506053 4506626 -146276927 + LTR22 LTR ERVK 1 580 0 566 299 87 71 chr11 4506626 4507075 -146276478 - L1M4 LINE L1 -1752 4394 3911 1429 113 102 4 chr11 4507075 4507350 -146276203 + L1MA3 LINE L1 6003 6304 -1 566 299 87 71 chr11 4507350 4507736 -146275817 - L1M4 LINE L1 -2235 3911 3533 235 296 45 34 chr11 4508569 4508657 -146274896 + MER5B DNA MER1_type 8 96 -82 1029 275 53 6 chr11 4508669 4509011 -146274542 - L1ME LINE L1 -391 5771 5414 1643 180 42 19 chr11 4509122 4509483 -146274070 - L1MA7 LINE L1 -129 6162 5794 341 316 137 0 chr11 4509572 4509784 -146273769 - L1ME LINE L1 -1058 5088 4848 256 281 0 47 chr11 4509785 4509849 -146273704 - MER5B DNA MER1_type -110 68 8 324 260 91 25 chr11 4509982 4510267 -146273286 - L1ME LINE L1 -2872 3274 2971 261 185 46 62 chr11 4510639 4510704 -146272849 - L2 LINE L2 0 3313 3250 252 309 52 16 chr11 4511363 4511489 -146272064 + MIR SINE MIR 45 176 -62 411 198 0 23 chr11 4514123 4514209 -146269344 - L1PA16 LINE L1 -105 6061 5978 199 319 85 32 chr11 4514789 4514883 -146268670 + L2 LINE L2 3174 3272 0 276 278 52 35 chr11 4515429 4515544 -146268009 - MIR SINE MIR -113 149 33 967 206 23 27 chr11 4516108 4516327 -146267226 + MER20 DNA MER1_type 1 218 -1 310 337 56 59 chr11 4517155 4517461 -146266092 + L1MB1 LINE L1 3869 4173 -1973 22 0 0 0 chr11 4517503 4517525 -146266028 + AT_rich Low_complexity Low_complexity 1 22 0 2223 95 0 23 chr11 4517701 4518007 -146265546 - AluSc SINE Alu -9 300 2 426 267 185 20 chr11 4518175 4518321 -146265232 + MER5A DNA MER1_type 18 187 -2 250 284 58 23 chr11 4518662 4518859 -146264694 + L1MB1 LINE L1 5188 5384 -747 31 0 0 0 chr11 4519716 4519747 -146263806 + AT_rich Low_complexity Low_complexity 1 31 0 264 364 40 7 chr11 4520543 4520694 -146262859 - L2 LINE L2 -9 3304 3149 * 284 359 92 43 chr11 4520686 4520990 -146262563 + L3 LINE CR1 1254 1572 -5 218 200 0 0 chr11 4521310 4521355 -146262198 + T-rich Low_complexity Low_complexity 2 46 0 1415 206 120 5 chr11 4523446 4523814 -146259739 + L1MB1 LINE L1 5768 6177 -12 27 0 0 0 chr11 4523823 4523850 -146259703 + AT_rich Low_complexity Low_complexity 1 27 0 416 202 0 12 chr11 4523854 4523938 -146259615 - MLT1C LTR MaLR -384 83 1 411 335 45 15 chr11 4523948 4524148 -146259405 + HAL1 LINE L1 1599 1804 -703 32 95 0 0 chr11 4524989 4525084 -146258469 + AT_rich Low_complexity Low_complexity 1 95 0 565 343 44 0 chr11 4525091 4525295 -146258258 - MIR SINE MIR -17 245 33 21 36 0 0 chr11 4526143 4526171 -146257382 + AT_rich Low_complexity Low_complexity 1 28 0 267 189 0 0 chr11 4529174 4529227 -146254326 + CT-rich Low_complexity Low_complexity 4 56 0 423 273 66 0 chr11 4530493 4530614 -146252939 - FLAM_A SINE Alu -4 129 1 22 0 0 0 chr11 4530742 4530764 -146252789 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr11 4530842 4530885 -146252668 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 21 95 0 0 chr11 4531063 4531126 -146252427 + AT_rich Low_complexity Low_complexity 1 63 0 414 335 52 47 chr11 4531247 4531731 -146251822 - L1MEd LINE L1 -856 1634 1050 9838 155 42 16 chr11 4531797 4532736 -146250817 + Tigger1 DNA MER2_type 304 1217 -1201 1990 95 23 36 chr11 4532736 4533041 -146250512 - AluSc SINE Alu -8 301 1 9838 155 42 16 chr11 4533041 4534008 -146249545 + Tigger1 DNA MER2_type 1217 2323 -95 2017 170 100 0 chr11 4534008 4534397 -146249156 - MSTC LTR MaLR 0 428 1 9838 155 42 16 chr11 4534397 4534496 -146249057 + Tigger1 DNA MER2_type 2323 2418 0 462 332 14 36 chr11 4534947 4535170 -146248383 - MIR SINE MIR -34 228 11 21 0 0 0 chr11 4535486 4535507 -146248046 + AT_rich Low_complexity Low_complexity 1 21 0 180 200 0 0 chr11 4536098 4536143 -146247410 + CT-rich Low_complexity Low_complexity 2 46 0 24 0 0 0 chr11 4536168 4536192 -146247361 + AT_rich Low_complexity Low_complexity 1 24 0 266 164 0 16 chr11 4538702 4538763 -146244790 + CT-rich Low_complexity Low_complexity 3 62 0 22 80 0 0 chr11 4539691 4539741 -146243812 + AT_rich Low_complexity Low_complexity 1 50 0 22 70 0 0 chr11 4540198 4540241 -146243312 + AT_rich Low_complexity Low_complexity 1 43 0 2539 182 11 17 chr11 4540242 4540763 -146242790 - L1PA16 LINE L1 -4 6162 5645 656 97 0 19 chr11 4541160 4541263 -146242290 + L1MA2 LINE L1 6197 6297 -7 22 0 0 0 chr11 4541283 4541305 -146242248 + AT_rich Low_complexity Low_complexity 1 22 0 356 322 24 10 chr11 4541333 4541538 -146242015 + L1MD1 LINE L1 4657 4864 -1282 1708 252 56 12 chr11 4542034 4542550 -146241003 - L1MB8 LINE L1 -42 6136 5598 * 2718 204 105 24 chr11 4542545 4543286 -146240267 + L1MD1 LINE L1 5404 6204 -38 23 0 0 0 chr11 4543303 4543326 -146240227 + AT_rich Low_complexity Low_complexity 1 23 0 504 284 36 13 chr11 4543345 4543570 -146239983 - L1MEc LINE L1 -3457 2758 2529 776 302 101 21 chr11 4543591 4544104 -146239449 - L1MEc LINE L1 -3918 2478 1925 261 276 0 0 chr11 4544170 4544228 -146239325 + Tigger3(Golem) DNA MER2_type 1 58 -2971 2908 147 8 25 chr11 4544233 4544742 -146238811 + Tigger3(Golem) DNA MER2_type 2529 3028 -1 389 264 31 109 chr11 4544825 4545018 -146238535 + MER58A DNA MER1_type 27 204 -20 610 125 62 0 chr11 4545246 4545342 -146238211 - AluSq/x SINE Alu -206 107 6 2245 75 0 0 chr11 4545356 4545668 -146237885 - AluY SINE Alu 0 312 1 459 289 30 6 chr11 4545694 4545860 -146237693 - L1M4 LINE L1 -1795 5770 5601 4461 54 0 14 chr11 4545867 4546445 -146237108 - L1PA8 LINE L1 -5 6167 5598 1245 72 0 0 chr11 4546445 4546612 -146236941 + L1PA8 LINE L1 5416 5582 -590 714 268 44 12 chr11 4546617 4546867 -146236686 - L1M4 LINE L1 -1988 5577 5320 26 50 0 0 chr11 4546922 4546962 -146236591 + AT_rich Low_complexity Low_complexity 1 40 0 1155 226 7 14 chr11 4548973 4549260 -146234293 - L1MC3 LINE L1 0 7785 7501 1383 131 5 5 chr11 4549613 4549819 -146233734 + AluSg/x SINE Alu 95 300 -12 1890 154 0 3 chr11 4552110 4552402 -146231151 - AluSx SINE Alu -19 293 3 1047 224 94 31 chr11 4553407 4553787 -146229766 - L1MCc LINE L1 -4157 3409 2785 364 20 0 0 chr11 4553924 4553973 -146229580 + L1PA15 LINE L1 6110 6158 -7 252 265 105 50 chr11 4554129 4554310 -146229243 + L2 LINE L2 1813 2003 -1311 325 298 0 8 chr11 4554313 4554434 -146229119 + (TA)n Simple_repeat Simple_repeat 1 120 0 257 275 0 0 chr11 4554441 4554521 -146229032 + L1MC4 LINE L1 6624 6703 -1339 259 51 26 0 chr11 4554768 4554807 -146228746 + L1PA13 LINE L1 6111 6150 -13 324 209 26 26 chr11 4554813 4554928 -146228625 + (TA)n Simple_repeat Simple_repeat 2 116 0 447 356 108 53 chr11 4554932 4555643 -146227910 + L2 LINE L2 2031 2780 -534 21 57 0 0 chr11 4557045 4557080 -146226473 + AT_rich Low_complexity Low_complexity 1 35 0 674 262 69 57 chr11 4557641 4557912 -146225641 + MLT1D LTR MaLR 88 354 -151 36 23 0 0 chr11 4558254 4558297 -146225256 + AT_rich Low_complexity Low_complexity 1 43 0 186 428 11 0 chr11 4559394 4559493 -146224060 - MIR SINE MIR -61 147 50 339 25 0 0 chr11 4559845 4559885 -146223668 + (CA)n Simple_repeat Simple_repeat 2 41 0 315 258 0 43 chr11 4563292 4563385 -146220168 - L1MCc LINE L1 -5517 1530 1442 532 305 147 31 chr11 4563476 4563925 -146219628 - L1MCc LINE L1 -5850 1197 697 215 317 143 19 chr11 4564077 4564238 -146219315 + MER5A DNA MER1_type 4 184 -5 195 100 0 0 chr11 4564379 4564409 -146219144 + (CA)n Simple_repeat Simple_repeat 2 31 0 665 333 24 4 chr11 4564497 4564749 -146218804 + MIR SINE MIR 5 261 -1 213 289 0 0 chr11 4565751 4565796 -146217757 - MER5B DNA MER1_type -8 170 126 322 235 43 43 chr11 4565812 4565927 -146217626 - L1ME1 LINE L1 -210 5956 5842 366 307 51 31 chr11 4565939 4566328 -146217225 + L1MEc LINE L1 1580 1880 -4502 329 107 0 18 chr11 4566351 4566407 -146217146 + (TTC)n Simple_repeat Simple_repeat 2 56 0 345 282 301 0 chr11 4566882 4567045 -146216508 - MIR SINE MIR -23 239 28 2317 222 58 30 chr11 4567958 4569275 -146214278 + L1M2 LINE L1 2295 3652 -3196 550 290 68 17 chr11 4569490 4569783 -146213770 + L1M2 LINE L1 3635 3942 -2906 873 199 10 10 chr11 4569783 4569979 -146213574 + L1M2 LINE L1 4451 4646 -2202 * 4001 203 19 8 chr11 4569978 4570985 -146212568 + L1M2 LINE L1 5164 6178 -743 894 184 6 17 chr11 4571730 4571904 -146211649 + FRAM SINE Alu 1 167 -9 245 387 73 0 chr11 4572608 4572745 -146210808 - MIR SINE MIR -99 163 17 25 65 0 0 chr11 4573629 4573675 -146209878 + AT_rich Low_complexity Low_complexity 1 46 0 1288 223 38 3 chr11 4573801 4574092 -146209461 - MER82 DNA MER2_type -154 499 199 1432 186 108 41 chr11 4574196 4574565 -146208988 + LTR54B LTR ERV1 1 409 -89 1711 155 55 0 chr11 4574565 4574856 -146208697 - AluSx SINE Alu -4 308 2 1432 186 108 41 chr11 4574856 4574949 -146208604 + LTR54B LTR ERV1 409 494 -4 595 253 52 26 chr11 4575380 4575534 -146208019 - MER82 DNA MER2_type -451 202 45 1071 216 132 70 chr11 4575549 4576048 -146207505 - MER61E LTR ERV1 -39 530 1 369 0 0 0 chr11 4576096 4576137 -146207416 + (TG)n Simple_repeat Simple_repeat 2 42 0 1841 258 36 37 chr11 4576175 4576976 -146206577 - L1MA8 LINE L1 0 6355 8 279 150 17 0 chr11 4577254 4577314 -146206239 - LTR54B LTR ERV1 -13 485 425 343 247 12 12 chr11 4577824 4577905 -146205648 - MIR SINE MIR -110 152 72 187 323 31 15 chr11 4577945 4578010 -146205543 - MIR SINE MIR -196 66 1 228 35 0 0 chr11 4578631 4578660 -146204893 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2302 72 0 0 chr11 4578662 4578952 -146204601 - AluY SINE Alu -21 290 1 21 0 0 0 chr11 4579457 4579478 -146204075 + AT_rich Low_complexity Low_complexity 1 21 0 2439 149 4 30 chr11 4580036 4580498 -146203055 + L1MA4 LINE L1 5844 6293 -7 21 0 0 0 chr11 4582956 4582977 -146200576 + AT_rich Low_complexity Low_complexity 1 21 0 2030 109 0 3 chr11 4583652 4583971 -146199582 - AluSx SINE Alu 0 318 1 277 343 0 0 chr11 4584954 4585056 -146198497 - MLT1L LTR MaLR -372 243 142 2207 105 3 0 chr11 4585267 4585573 -146197980 + AluSp SINE Alu 1 307 -6 42 82 0 0 chr11 4585875 4585973 -146197580 + AT_rich Low_complexity Low_complexity 1 98 0 393 197 13 0 chr11 4585993 4586069 -146197484 + Charlie3 DNA MER1_type 1 77 -2633 23 0 0 0 chr11 4586899 4586922 -146196631 + AT_rich Low_complexity Low_complexity 1 23 0 495 301 31 35 chr11 4587469 4587649 -146195904 - L1ME LINE L1 -362 5800 5620 1915 152 27 24 chr11 4587649 4588023 -146195530 + THE1C LTR MaLR 1 375 0 495 301 31 35 chr11 4588023 4588071 -146195482 - L1ME LINE L1 -542 5620 5573 381 268 70 23 chr11 4588074 4588315 -146195238 - L1ME LINE L1 -649 5517 5268 209 60 100 0 chr11 4588345 4588395 -146195158 + (TA)n Simple_repeat Simple_repeat 1 55 0 1021 103 0 0 chr11 4588644 4588780 -146194773 - AluSc SINE Alu -13 296 161 285 286 0 0 chr11 4590619 4590703 -146192850 - L1MC4 LINE L1 -1344 6698 6615 * 290 215 51 0 chr11 4590628 4590707 -146192846 + L1MC4 LINE L1 6614 6696 -1346 21 0 0 0 chr11 4590812 4590833 -146192720 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 4590988 4591018 -146192535 + AT_rich Low_complexity Low_complexity 1 30 0 8054 68 0 8 chr11 4791697 4792829 -145990724 + L1P LINE L1 978 2100 -4046 22 0 0 0 chr11 4792929 4792951 -145990602 + GC_rich Low_complexity Low_complexity 1 22 0 649 222 8 0 chr11 4794469 4794595 -145988958 - Tigger1 DNA MER2_type -2290 128 2 2028 188 91 99 chr11 4794668 4795392 -145988161 + LTR8A LTR ERV1 1 718 -9 346 314 0 8 chr11 4796121 4796242 -145987311 + MER94 DNA DNA 15 134 0 23 0 0 0 chr11 4799374 4799397 -145984156 + AT_rich Low_complexity Low_complexity 1 23 0 34340 38 3 3 chr11 4799525 4804772 -145978781 + L1PA4 LINE L1 912 6153 -2 315 0 0 0 chr11 4806861 4806896 -145976657 + (CA)n Simple_repeat Simple_repeat 1 35 0 245 200 17 0 chr11 4807051 4807111 -145976442 + (CA)n Simple_repeat Simple_repeat 2 62 0 219 250 0 44 chr11 4807751 4807819 -145975734 + L2 LINE L2 3249 3313 0 24 67 0 0 chr11 4808098 4808143 -145975410 + AT_rich Low_complexity Low_complexity 1 45 0 201 357 133 0 chr11 4808975 4809073 -145974480 + L2 LINE L2 3156 3266 -6 1834 110 0 19 chr11 4809569 4809833 -145973720 + AluSq SINE Alu 14 272 -41 349 222 37 0 chr11 4809836 4809971 -145973582 + GA-rich Low_complexity Low_complexity 2 141 0 3870 96 7 4 chr11 4810453 4811003 -145972550 - MER41A LTR ERV1 -2 552 1 655 332 22 0 chr11 4811477 4811700 -145971853 + MIR SINE MIR 35 262 0 192 77 0 0 chr11 4812394 4812420 -145971133 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr11 4812798 4812822 -145970731 + AT_rich Low_complexity Low_complexity 1 24 0 216 143 0 0 chr11 4813743 4813785 -145969768 + (TTTC)n Simple_repeat Simple_repeat 4 45 0 285 338 152 22 chr11 4813866 4814135 -145969418 - L2 LINE L2 -18 3295 2992 3531 174 52 57 chr11 4814895 4816026 -145967527 - L1MA9 LINE L1 -73 6239 5109 1991 206 30 4 chr11 4816037 4816497 -145967056 + L1MA9 LINE L1 4628 5099 -1047 7592 76 0 6 chr11 4816575 4817623 -145965930 + L1PA3 LINE L1 8 1049 -5097 22977 40 2 0 chr11 4817724 4821405 -145962148 + L1PA3 LINE L1 2493 6182 0 310 321 126 14 chr11 4821454 4821731 -145961822 - L1MCa LINE L1 -4915 1511 1204 495 229 61 79 chr11 4821735 4821949 -145961604 + MSTB1 LTR MaLR 212 421 -11 237 128 0 0 chr11 4823035 4823082 -145960471 + (TC)n Simple_repeat Simple_repeat 1 47 0 722 258 19 0 chr11 4826078 4826233 -145957320 - FRAM SINE Alu -9 167 10 206 264 92 35 chr11 4826244 4826331 -145957222 + MIR3 SINE MIR 113 204 -4 196 223 11 11 chr11 4827615 4827709 -145955844 + (TA)n Simple_repeat Simple_repeat 1 94 0 380 256 30 6 chr11 4827723 4827891 -145955662 + (TA)n Simple_repeat Simple_repeat 1 172 0 234 411 61 17 chr11 4827947 4828127 -145955426 - L2 LINE L2 -188 3084 2897 298 373 128 33 chr11 4828460 4829371 -145954182 - L2 LINE L2 -534 2780 1783 731 323 86 10 chr11 4829378 4829834 -145953719 + L2 LINE L2 2685 3185 -128 554 68 0 0 chr11 4829869 4829942 -145953611 - MADE1 DNA Mariner -7 73 1 25 31 0 0 chr11 4830063 4830095 -145953458 + AT_rich Low_complexity Low_complexity 1 32 0 307 385 24 61 chr11 4830158 4830405 -145953148 - L2 LINE L2 -82 3190 2953 213 382 55 30 chr11 4830673 4830872 -145952681 - L2 LINE L2 -690 2624 2421 255 337 61 32 chr11 4830889 4831135 -145952418 - L2 LINE L2 -1034 2280 2028 262 335 101 59 chr11 4833154 4833441 -145950112 + L2 LINE L2 3012 3310 -3 531 157 22 0 chr11 4833652 4833741 -145949812 + AluJ/FLAM SINE Alu 1 91 -221 1428 199 32 0 chr11 4833742 4833993 -145949560 + AluJo SINE Alu 50 308 -4 2534 59 0 0 chr11 4834537 4834841 -145948712 + AluY SINE Alu 1 304 -7 374 319 59 0 chr11 4834843 4835012 -145948541 + L1ME LINE L1 5485 5663 -458 186 287 202 0 chr11 4835024 4835118 -145948435 + L2 LINE L2 3192 3304 -9 217 224 0 0 chr11 4835491 4835540 -145948013 + (ATG)n Simple_repeat Simple_repeat 3 51 0 462 256 103 39 chr11 4835593 4835796 -145947757 - MIR SINE MIR -44 218 3 240 191 63 0 chr11 4835979 4836042 -145947511 - L1MC1 LINE L1 -1 6332 6266 600 226 40 22 chr11 4836066 4836247 -145947306 - MIR SINE MIR -14 248 63 213 308 0 0 chr11 4836532 4836584 -145946969 + L2 LINE L2 2914 2965 -307 184 353 0 0 chr11 4837627 4837678 -145945875 - MIR SINE MIR -131 131 81 338 325 113 0 chr11 4837891 4838042 -145945511 - MIR SINE MIR -93 169 2 10649 34 9 1 chr11 4838066 4840117 -145943436 + L1PA4 LINE L1 4079 6148 -7 2135 139 35 16 chr11 4840480 4840848 -145942705 + THE1C LTR MaLR 1 375 0 186 346 79 10 chr11 4841306 4841407 -145942146 - MIR SINE MIR -72 190 83 180 200 0 0 chr11 4841670 4841715 -145941838 + A-rich Low_complexity Low_complexity 1 45 0 366 333 18 9 chr11 4842488 4842599 -145940954 + L2 LINE L2 2981 3092 -180 513 230 11 11 chr11 4843807 4843981 -145939572 + CT-rich Low_complexity Low_complexity 1 174 0 1636 195 30 10 chr11 4844017 4844320 -145939233 - AluJb SINE Alu 0 312 4 3069 83 106 176 chr11 4846126 4847051 -145936502 + LTR12 LTR ERV1 1 2428 -10 363 332 93 10 chr11 4847189 4847382 -145936171 - MIR SINE MIR -48 214 6 361 248 28 28 chr11 4847423 4847532 -145936021 - L2 LINE L2 -6 3307 3199 358 357 41 26 chr11 4848889 4849158 -145934395 + L1M4 LINE L1 2466 2738 -3408 299 263 18 9 chr11 4849158 4849272 -145934281 + L1ME3A LINE L1 6049 6163 -7 312 322 59 59 chr11 4849324 4849563 -145933990 - HAL1 LINE L1 -2151 356 118 463 125 0 23 chr11 4850338 4850426 -145933127 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 1523 247 146 0 chr11 4850520 4851035 -145932518 + MER90 LTR ERV1 3 592 -22 349 286 79 62 chr11 4851369 4851610 -145931943 + L1ME LINE L1 1075 1319 -5097 563 290 106 24 chr11 4851618 4852220 -145931333 + L1ME LINE L1 1152 2013 -4594 514 186 21 0 chr11 4852469 4852566 -145930987 + Tigger3b DNA MER2_type 1 99 -1132 * 5153 145 42 4 chr11 4852538 4853494 -145930059 + Tigger3b DNA MER2_type 240 1231 0 1419 227 36 74 chr11 4853576 4854101 -145929452 + MLT1D LTR MaLR 1 505 0 41609 40 7 0 chr11 4854313 4860471 -145923082 + L1PA3 LINE L1 3 6198 0 3077 90 2 0 chr11 4860479 4860900 -145922653 + L1PA7 LINE L1 5733 6154 0 1423 210 49 9 chr11 4861386 4861714 -145921839 - MER2 DNA MER2_type 0 344 4 317 335 62 11 chr11 4861720 4861899 -145921654 + MIR SINE MIR 53 240 -22 23 54 0 0 chr11 4862538 4862575 -145920978 + AT_rich Low_complexity Low_complexity 1 37 0 225 267 40 13 chr11 4863418 4863493 -145920060 + MIR SINE MIR 175 251 -11 264 337 192 4 chr11 4863694 4863949 -145919604 - L2 LINE L2 -1210 2104 1802 2502 146 9 16 chr11 4866218 4866350 -145917203 - MER61B LTR ERV1 0 425 294 287 25 25 0 chr11 4866350 4866390 -145917163 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2502 146 9 16 chr11 4866390 4866681 -145916872 - MER61B LTR ERV1 -131 294 5 2196 66 7 10 chr11 4866708 4867009 -145916544 + AluY SINE Alu 1 300 -11 3619 206 36 33 chr11 4867952 4868637 -145914916 + L1MC3 LINE L1 5726 6416 -1369 2953 203 122 6 chr11 4868637 4869342 -145914211 + LTR48 LTR ERV1 1 787 0 3619 206 36 33 chr11 4869342 4869635 -145913918 + L1MC3 LINE L1 6416 6707 -1078 743 243 57 29 chr11 4869838 4870220 -145913333 + Charlie2 DNA MER1_type 2413 2805 -57 991 167 69 0 chr11 4870220 4870424 -145913129 - Tigger1 DNA MER2_type -1 2417 2200 2156 150 26 3 chr11 4870535 4870922 -145912631 - L1MA4A LINE L1 -6 6297 5902 306 267 35 69 chr11 4870945 4871061 -145912492 + MIR SINE MIR 1 112 -150 243 272 37 0 chr11 4871253 4871334 -145912219 + MIR SINE MIR 119 202 -60 239 133 22 0 chr11 4871933 4871978 -145911575 + (TATAA)n Simple_repeat Simple_repeat 5 50 0 22 35 0 0 chr11 4871979 4872008 -145911545 + AT_rich Low_complexity Low_complexity 1 29 0 1330 169 13 30 chr11 4872263 4872500 -145911053 + AluJo SINE Alu 71 303 -9 763 198 93 0 chr11 4872694 4872856 -145910697 + MER5B DNA MER1_type 1 177 -1 270 288 99 11 chr11 4873427 4873518 -145910035 - MIR SINE MIR -102 106 20 347 327 101 12 chr11 4873781 4873949 -145909604 - L3 LINE CR1 -48 1529 1347 359 294 24 76 chr11 4874030 4874241 -145909312 + L2 LINE L2 3114 3313 0 201 403 57 8 chr11 4874551 4874675 -145908878 + L2 LINE L2 3141 3270 -2 240 379 148 6 chr11 4874679 4874848 -145908705 + L3 LINE CR1 1046 1238 -339 370 291 191 24 chr11 4874880 4875090 -145908463 + L3 LINE CR1 1331 1575 -2 198 284 222 37 chr11 4876161 4876323 -145907230 + MIR SINE MIR 1 192 -70 255 103 0 0 chr11 4877728 4877767 -145905786 + (TC)n Simple_repeat Simple_repeat 2 40 0 652 333 6 6 chr11 4878171 4878354 -145905199 - MER5A DNA MER1_type -5 184 2 368 314 9 0 chr11 4878495 4878600 -145904953 - MER5A DNA MER1_type -83 106 1 302 320 66 40 chr11 4881209 4881481 -145902072 + L2 LINE L2 1819 2097 -1217 2805 44 3 0 chr11 4884396 4884738 -145898815 + L1PA5 LINE L1 5804 6146 -8 239 215 38 0 chr11 4884824 4884903 -145898650 + L1MC4 LINE L1 7960 8041 -1 189 359 26 13 chr11 4885210 4885288 -145898265 - L2 LINE L2 -87 3185 3107 479 272 92 29 chr11 4885774 4886021 -145897532 + LTR33A LTR ERVL 161 462 -61 892 281 141 23 chr11 4886035 4886715 -145896838 + LTR50 LTR ERVL 1 791 -4 214 335 53 21 chr11 4887986 4888108 -145895445 + MIR3 SINE MIR 14 138 -103 2130 127 0 0 chr11 4888588 4888879 -145894674 + AluSx SINE Alu 3 293 -19 184 346 103 9 chr11 4888913 4889020 -145894533 - MIR3 SINE MIR -87 121 5 938 50 0 0 chr11 4889259 4889379 -145894174 - L1PA8A LINE L1 -187 5944 5825 373 74 0 0 chr11 4889379 4889429 -145894124 + L1PA8 LINE L1 6117 6170 -2 236 296 54 18 chr11 4889500 4889611 -145893942 + MIR SINE MIR 106 256 -6 2367 63 6 31 chr11 4890702 4891021 -145892532 + AluY SINE Alu 1 311 0 215 324 43 2 chr11 4893205 4893391 -145890162 - MIR SINE MIR -1 261 24 510 181 0 0 chr11 4894011 4894116 -145889437 + GA-rich Low_complexity Low_complexity 2 106 0 666 136 42 8 chr11 4895013 4895131 -145888422 - L1PA15 LINE L1 0 6816 6695 1868 167 16 0 chr11 4895137 4895460 -145888093 + MSTA LTR MaLR 21 348 -80 6998 199 19 7 chr11 4895489 4897891 -145885662 - L1PA15 LINE L1 -111 6705 4279 5107 115 25 28 chr11 4897929 4898815 -145884738 + L1PA13 LINE L1 5280 6162 -1 491 256 63 0 chr11 4898811 4899002 -145884551 - L1PA15 LINE L1 -4817 1970 1768 * 1676 259 11 5 chr11 4899328 4899776 -145883777 - L1PA15 LINE L1 -4996 1791 1341 1806 300 43 34 chr11 4900004 4900747 -145882806 - L1PA15 LINE L1 -6037 750 1 6501 21 4 16 chr11 4903048 4903679 -145879874 - L1PA2 LINE L1 -6 6149 5529 2763 16 0 0 chr11 4903679 4903985 -145879568 + AluYa5 SINE Alu 1 306 -5 6501 21 4 16 chr11 4903985 4904171 -145879382 - L1PA2 LINE L1 -626 5529 5342 5717 29 7 0 chr11 4904169 4904899 -145878654 + L1PA2 LINE L1 4598 5332 -814 * 406 361 12 0 chr11 4908835 4909004 -145874549 + MER5B DNA MER1_type 5 175 -3 561 315 119 39 chr11 4909249 4909769 -145873784 + L2 LINE L2 2232 2793 -521 2256 118 0 0 chr11 4910110 4910406 -145873147 + AluSg SINE Alu 1 296 -14 221 340 128 0 chr11 4910518 4910612 -145872941 + MIR SINE MIR 48 153 -109 184 283 250 0 chr11 4911456 4911548 -145872005 - MIR SINE MIR -60 148 34 377 266 55 9 chr11 4911656 4911765 -145871788 - MER81 DNA DNA 0 114 1 262 346 40 0 chr11 4911767 4911868 -145871685 + MIR SINE MIR 38 142 -120 240 86 0 0 chr11 4912609 4912644 -145870909 + (TG)n Simple_repeat Simple_repeat 1 35 0 279 352 92 5 chr11 4912851 4913047 -145870506 - MIR SINE MIR -3 259 47 457 318 58 71 chr11 4914005 4914540 -145869013 + L2 LINE L2 2770 3298 -15 326 296 191 16 chr11 4914953 4915142 -145868411 - MIR SINE MIR 0 262 41 510 309 7 20 chr11 4915435 4915587 -145867966 + MIR SINE MIR 28 177 -85 1194 199 23 4 chr11 4915672 4915934 -145867619 + L1MA10 LINE L1 6000 6266 -68 40634 35 22 1 chr11 4916256 4922368 -145861185 + L1PA2 LINE L1 1 6241 0 315 244 92 24 chr11 4923391 4923535 -145860018 - MIR SINE MIR -59 203 45 1234 245 102 22 chr11 4924283 4924568 -145858985 + L2 LINE L2 2740 3001 -312 1973 155 25 50 chr11 4924568 4924968 -145858585 + MLT1B LTR MaLR 1 390 0 1234 245 102 22 chr11 4924968 4925200 -145858353 + L2 LINE L2 3001 3302 -11 294 384 16 0 chr11 4925846 4925971 -145857582 + MIR3 SINE MIR 11 137 -71 224 336 25 33 chr11 4926115 4926237 -145857316 - MIR SINE MIR -83 179 59 276 315 27 63 chr11 4926261 4926372 -145857181 - MIR SINE MIR -81 127 21 771 244 122 0 chr11 4928827 4929040 -145854513 + MIR SINE MIR 12 250 -12 186 282 39 13 chr11 4929115 4929193 -145854360 + MIR SINE MIR 156 235 -27 22 0 0 0 chr11 4929669 4929691 -145853862 + AT_rich Low_complexity Low_complexity 1 22 0 242 158 26 0 chr11 4929937 4929975 -145853578 + L2 LINE L2 3213 3251 -21 21 36 0 0 chr11 4931194 4931222 -145852331 + AT_rich Low_complexity Low_complexity 1 28 0 1915 136 8 0 chr11 4931437 4931701 -145851852 - AluSq SINE Alu -47 266 1 218 308 0 96 chr11 4931828 4931932 -145851621 + MIR3 SINE MIR 10 103 -105 452 289 123 24 chr11 4933374 4933585 -145849968 + MIR SINE MIR 28 259 -3 643 281 0 6 chr11 4933767 4933938 -145849615 + L1M3c LINE L1 1357 1526 -5970 * 1531 236 73 25 chr11 4933933 4934684 -145848869 + L1M3c LINE L1 2943 3737 -3828 2227 190 28 20 chr11 4934704 4935162 -145848391 - MER88 LTR ERVL -2 462 1 201 250 23 0 chr11 4935858 4935902 -145847651 + GA-rich Low_complexity Low_complexity 2 46 0 1429 92 67 0 chr11 4936036 4936231 -145847322 + AluSg/x SINE Alu 87 294 -18 1039 225 9 0 chr11 4936532 4936754 -145846799 + HERVL74 LTR ERVL 1869 2092 -3593 4148 208 11 34 chr11 4936768 4937700 -145845853 + HERVL74 LTR ERVL 2428 3337 -2348 912 177 0 12 chr11 4937685 4937849 -145845704 + HERVL74 LTR ERVL 3479 3640 -2045 * 545 328 131 35 chr11 4938180 4938690 -145844863 + L2 LINE L2 2133 2691 -623 489 185 130 100 chr11 4939259 4939459 -145844094 + MER65A LTR ERV1 1 206 -239 342 229 44 66 chr11 4939596 4939779 -145843774 + MER65A LTR ERV1 267 445 0 341 376 19 19 chr11 4940262 4940467 -145843086 + L2 LINE L2 2751 2955 -359 1794 48 4 4 chr11 4940608 4940839 -145842714 - L1PA6 LINE L1 -7 6147 5917 438 326 153 42 chr11 4940839 4941370 -145842183 + L2 LINE L2 2465 3094 -219 680 266 34 34 chr11 4941440 4941647 -145841906 + MIR SINE MIR 20 226 -36 380 352 23 8 chr11 4941678 4941806 -145841747 + L2 LINE L2 3134 3263 -9 228 250 110 0 chr11 4941823 4941923 -145841630 + L1ME4a LINE L1 5840 5950 -171 714 284 87 18 chr11 4942704 4942933 -145840620 + MIR SINE MIR 13 257 -5 2453 103 39 25 chr11 4944320 4944679 -145838874 - THE1B LTR MaLR 0 364 1 275 360 55 55 chr11 4945248 4945629 -145837924 + L2 LINE L2 2910 3290 -23 2121 286 143 52 chr11 4949118 4950264 -145833289 - L2 LINE L2 -767 2547 1507 3534 77 41 0 chr11 4950264 4950706 -145832847 - LTR46 LTR ERV1 0 460 1 2121 286 143 52 chr11 4950706 4950730 -145832823 - L2 LINE L2 -1807 1507 1487 845 227 32 16 chr11 4950730 4950915 -145832638 + MER5A DNA MER1_type 2 189 0 2121 286 143 52 chr11 4950915 4951077 -145832476 - L2 LINE L2 -1827 1487 1092 574 354 108 6 chr11 4951121 4951474 -145832079 - L2 LINE L2 -2810 504 116 950 296 148 10 chr11 4951675 4952326 -145831227 + L2 LINE L2 2507 3263 -50 511 246 81 0 chr11 4958195 4958334 -145825219 - MIR SINE MIR -49 213 63 357 257 140 29 chr11 4959050 4959221 -145824332 - MIR SINE MIR -44 218 29 2151 130 0 3 chr11 4960050 4960350 -145823203 + AluSx SINE Alu 1 299 -13 198 0 0 0 chr11 4960784 4960806 -145822747 + (TA)n Simple_repeat Simple_repeat 2 23 0 2266 127 0 0 chr11 4960806 4961113 -145822440 - AluSx SINE Alu -5 307 1 329 294 29 52 chr11 4962453 4962589 -145820964 - MIR SINE MIR -109 153 21 577 233 109 57 chr11 4962787 4962947 -145820606 + MIR SINE MIR 25 198 -64 524 15 15 0 chr11 4962947 4963012 -145820541 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 577 233 109 57 chr11 4963012 4963044 -145820509 + MIR SINE MIR 198 227 -35 475 344 54 13 chr11 4967147 4967371 -145816182 - MIR SINE MIR -10 252 20 1388 71 33 0 chr11 4967888 4968070 -145815483 + L1PA13 LINE L1 5975 6162 -1 2353 87 0 22 chr11 4968548 4968859 -145814694 + AluSg SINE Alu 1 304 -6 203 308 0 15 chr11 4969677 4969742 -145813811 - MIR3 SINE MIR -139 69 6 3586 80 14 12 chr11 4969769 4970254 -145813299 - LTR15 LTR ERV1 -7 486 1 858 249 12 70 chr11 4970919 4971176 -145812377 + MIR SINE MIR 21 262 0 2180 127 3 0 chr11 4971270 4971570 -145811983 - AluSx SINE Alu -11 301 1 228 322 96 17 chr11 4972758 4972873 -145810680 + MIR SINE MIR 90 213 -49 27 29 0 0 chr11 4974219 4974253 -145809300 + AT_rich Low_complexity Low_complexity 1 34 0 2253 119 3 0 chr11 4974410 4974721 -145808832 + AluSx SINE Alu 1 312 0 28 0 0 0 chr11 4974836 4974864 -145808689 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr11 4974983 4975015 -145808538 + AT_rich Low_complexity Low_complexity 1 32 0 8866 221 23 13 chr11 4975389 4976347 -145807206 - L1P4 LINE L1 -735 5431 4485 2373 76 0 22 chr11 4976347 4976661 -145806892 - AluY SINE Alu -4 307 1 8866 221 23 13 chr11 4976661 4976714 -145806839 - L1P4 LINE L1 -1681 4485 4434 288 77 0 0 chr11 4976714 4976753 -145806800 + (TG)n Simple_repeat Simple_repeat 1 39 0 8866 221 23 13 chr11 4976753 4977969 -145805584 - L1P4 LINE L1 -1732 4434 3178 1945 72 0 4 chr11 4978039 4978275 -145805278 + AluY SINE Alu 67 301 -10 1291 175 74 21 chr11 4978904 4979189 -145804364 - L1 LINE L1 -2147 3999 3700 * 2868 185 12 0 chr11 4979184 4979746 -145803807 + L1 LINE L1 3985 4553 -1593 612 149 0 0 chr11 4979748 4979842 -145803711 + L1PB4 LINE L1 6063 6156 0 1863 168 35 23 chr11 4980370 4980764 -145802789 + L1MA7 LINE L1 5889 6287 -4 388 272 24 16 chr11 4980907 4981032 -145802521 + MIR SINE MIR 20 145 -63 345 257 40 20 chr11 4981050 4981202 -145802351 + L2 LINE L2 2804 2958 -314 28 29 0 0 chr11 4981243 4981278 -145802275 + AT_rich Low_complexity Low_complexity 1 35 0 337 264 132 35 chr11 4981287 4981431 -145802122 + L2 LINE L2 3156 3313 0 5426 78 4 13 chr11 4981433 4982138 -145801415 - L1PA13 LINE L1 0 6163 5465 300 287 25 25 chr11 4984436 4984558 -145798995 + MER94 DNA DNA 1 122 -12 243 225 48 100 chr11 4985620 4985777 -145797776 + L1MC4 LINE L1 7402 7530 -431 2409 76 0 0 chr11 4985777 4986078 -145797475 - AluSx SINE Alu -11 301 1 243 225 48 100 chr11 4986078 4986229 -145797324 + L1MC4 LINE L1 7530 7687 -274 390 275 47 109 chr11 4986257 4986471 -145797082 + MIR SINE MIR 1 196 -66 2236 99 3 7 chr11 4986471 4986765 -145796788 - AluSg SINE Alu -17 293 1 390 275 47 109 chr11 4986765 4986826 -145796727 + MIR SINE MIR 196 259 -3 212 318 32 0 chr11 4987642 4987705 -145795848 + MIR SINE MIR 47 111 -151 1429 176 0 0 chr11 4987878 4988105 -145795448 - L1PB3 LINE L1 -7 6147 5921 1516 188 120 0 chr11 4988948 4989256 -145794297 + MER7A DNA MER2_type 3 345 -1 218 309 9 91 chr11 4990071 4990181 -145793372 - L2 LINE L2 0 3313 3213 315 267 182 40 chr11 4991894 4992070 -145791483 - MIR SINE MIR -4 258 58 486 270 122 0 chr11 4992575 4992723 -145790830 - MIR SINE MIR -69 193 28 274 372 78 52 chr11 4993160 4993504 -145790049 - L2 LINE L2 -1 3271 2919 247 330 57 0 chr11 4993595 4993683 -145789870 - L2 LINE L2 -44 3228 3136 25 31 0 0 chr11 4993844 4993876 -145789677 + AT_rich Low_complexity Low_complexity 1 32 0 365 300 62 31 chr11 4993930 4994090 -145789463 - MIR SINE MIR -97 165 1 207 383 12 0 chr11 4994097 4994178 -145789375 - L2 LINE L2 -285 2987 2906 198 0 0 0 chr11 4994208 4994230 -145789323 + (TGG)n Simple_repeat Simple_repeat 1 22 0 359 179 0 13 chr11 4994276 4994354 -145789199 + GA-rich Low_complexity Low_complexity 2 78 0 501 47 0 0 chr11 4994355 4994419 -145789134 + (GGAA)n Simple_repeat Simple_repeat 2 65 0 451 297 59 18 chr11 4994634 4994856 -145788697 + MIR SINE MIR 1 231 -31 21 57 0 0 chr11 4994868 4994903 -145788650 + AT_rich Low_complexity Low_complexity 1 35 0 282 184 158 53 chr11 4995612 4995688 -145787865 + MER96 DNA MER1_type? 1 84 -91 296 294 76 21 chr11 4997065 4997303 -145786250 - L1ME4a LINE L1 -17 6104 5854 4609 108 75 11 chr11 4997396 4998125 -145785428 - L1PA13 LINE L1 0 6163 5388 2182 54 65 7 chr11 4998321 4998599 -145784954 + AluY SINE Alu 2 295 -16 25 65 0 0 chr11 4999200 4999246 -145784307 + AT_rich Low_complexity Low_complexity 1 46 0 2262 117 0 0 chr11 5001628 5001935 -145781618 + AluSx SINE Alu 1 307 -5 471 279 80 40 chr11 5002589 5002815 -145780738 - LTR68 LTR ERV1 -505 235 1 452 297 104 16 chr11 5003210 5003402 -145780151 + MER63A DNA MER1_type 1 209 -1 3116 197 66 8 chr11 5003614 5004268 -145779285 - L1MB5 LINE L1 -8 6166 5475 204 89 0 54 chr11 5004268 5004324 -145779229 + (TA)n Simple_repeat Simple_repeat 2 54 0 35 63 0 0 chr11 5004877 5004940 -145778613 + AT_rich Low_complexity Low_complexity 1 63 0 245 203 31 16 chr11 5005308 5005372 -145778181 - LTR54 LTR ERV1 -47 463 399 2684 242 55 6 chr11 5007507 5008233 -145775320 + L1MB7 LINE L1 323 1084 -5196 3055 103 0 0 chr11 5008234 5008640 -145774913 + L1P3 LINE L1 1 406 -6055 2456 94 1 80 chr11 5008647 5008803 -145774750 + L1P3 LINE L1 5328 5495 -659 721 48 0 0 chr11 5008803 5008887 -145774666 + AluSg/x SINE Alu 215 298 -12 2456 94 1 80 chr11 5008887 5009168 -145774385 + L1P3 LINE L1 5495 5756 -398 1119 219 59 22 chr11 5009164 5009484 -145774069 + L1MB7 LINE L1 1161 1492 -4892 * 27 29 0 0 chr11 5009810 5009844 -145773709 + AT_rich Low_complexity Low_complexity 1 34 0 209 401 6 0 chr11 5010389 5010556 -145772997 + (CCA)n Simple_repeat Simple_repeat 1 168 0 2163 84 3 11 chr11 5011224 5011508 -145772045 - AluSp SINE Alu -10 303 22 792 237 11 12 chr11 5011555 5011775 -145771778 + L1MB7 LINE L1 1471 2059 -4324 284 243 14 0 chr11 5011760 5011834 -145771719 + L1MB7 LINE L1 4188 4262 -2120 * 378 245 0 101 chr11 5011836 5011928 -145771625 + L1MB7 LINE L1 4387 4452 -1930 2459 60 7 0 chr11 5011928 5012228 -145771325 + AluY SINE Alu 1 302 -9 378 245 0 101 chr11 5012228 5012323 -145771230 + L1MB7 LINE L1 4452 4555 -1827 452 211 0 0 chr11 5012325 5012420 -145771133 + L1MB7 LINE L1 5252 5346 -1036 1389 151 0 47 chr11 5013747 5013842 -145769711 - AluSg SINE Alu -88 222 124 2111 115 0 36 chr11 5013842 5014146 -145769407 - AluSg SINE Alu -17 293 1 1389 151 0 47 chr11 5014146 5014282 -145769271 - AluSg SINE Alu -186 124 2 1064 155 12 0 chr11 5014283 5014444 -145769109 - AluSg/x SINE Alu -16 294 132 2898 55 0 3 chr11 5014444 5014789 -145768764 - SVA Other Other 0 1386 1043 3630 220 40 21 chr11 5014889 5015920 -145767633 + L1MB7 LINE L1 5351 6404 -16 253 123 18 18 chr11 5018867 5018924 -145764629 + GA-rich Low_complexity Low_complexity 2 58 0 234 0 0 0 chr11 5018924 5018950 -145764603 + (TG)n Simple_repeat Simple_repeat 2 27 0 190 210 0 49 chr11 5019669 5019750 -145763803 + (TATG)n Simple_repeat Simple_repeat 3 79 0 1985 113 0 15 chr11 5020145 5020419 -145763134 + AluSx SINE Alu 27 296 -16 724 201 152 0 chr11 5020680 5020844 -145762709 - MER5A DNA MER1_type 0 189 1 332 291 15 67 chr11 5020981 5021004 -145762549 - MIR SINE MIR -63 145 122 2568 37 0 3 chr11 5021004 5021302 -145762251 + AluY SINE Alu 15 311 0 332 291 15 67 chr11 5021302 5021412 -145762141 - MIR SINE MIR -86 122 19 2339 78 0 3 chr11 5021736 5022029 -145761524 - AluSg SINE Alu -18 292 1 21 57 0 0 chr11 5024023 5024058 -145759495 + AT_rich Low_complexity Low_complexity 1 35 0 567 248 75 37 chr11 5024903 5024985 -145758568 + MIR SINE MIR 41 118 -144 1753 190 3 0 chr11 5024985 5025290 -145758263 - AluSx SINE Alu -5 307 2 567 248 75 37 chr11 5025290 5025421 -145758132 + MIR SINE MIR 118 262 0 24 32 0 0 chr11 5025660 5025691 -145757862 + AT_rich Low_complexity Low_complexity 1 31 0 4271 49 0 0 chr11 5025691 5026180 -145757373 - L1PA5 LINE L1 0 6154 5666 358 385 34 6 chr11 5026206 5026385 -145757168 + L2 LINE L2 2869 3052 -261 747 269 103 17 chr11 5026551 5026935 -145756618 + L1MC/D LINE L1 5317 5744 -625 367 233 39 39 chr11 5027078 5027207 -145756346 + MIR SINE MIR 77 205 -57 298 233 69 74 chr11 5027224 5027413 -145756140 - L1ME LINE L1 -364 5757 5570 26 74 0 0 chr11 5027586 5027640 -145755913 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr11 5027872 5027901 -145755652 + AT_rich Low_complexity Low_complexity 1 29 0 1205 194 109 107 chr11 5028234 5028785 -145754768 - MER34B LTR ERV1 -2 563 12 2113 187 5 29 chr11 5028790 5029164 -145754389 - MLT1A1 LTR MaLR 0 365 1 2177 119 0 3 chr11 5029212 5029515 -145754038 - AluSq SINE Alu -11 302 1 2290 110 3 0 chr11 5029597 5029905 -145753648 - AluY SINE Alu -2 309 1 2166 116 0 7 chr11 5030199 5030501 -145753052 - AluSx SINE Alu -12 300 1 730 248 78 53 chr11 5030645 5031056 -145752497 + LTR37A LTR ERV1 6 426 0 2787 161 13 23 chr11 5031112 5031721 -145751832 + pTR5 LTR ERV1 743 1345 -1093 3213 129 234 53 chr11 5031736 5032432 -145751121 + LTR12 LTR ERV1 5 826 0 2535 127 148 7 chr11 5032666 5032782 -145750771 - LTR45B LTR ERV1 0 489 391 2369 74 3 3 chr11 5032782 5033079 -145750474 + AluSp SINE Alu 1 297 -16 2535 127 148 7 chr11 5033079 5033389 -145750164 - LTR45B LTR ERV1 -98 391 3 950 251 64 20 chr11 5033693 5033944 -145749609 - MIR SINE MIR 0 262 1 308 300 0 47 chr11 5033981 5034050 -145749503 + GA-rich Low_complexity Low_complexity 2 73 -71 1945 175 7 0 chr11 5034050 5034358 -145749195 + AluJo SINE Alu 1 310 -2 308 300 0 47 chr11 5034358 5034438 -145749115 + GA-rich Low_complexity Low_complexity 73 144 0 1011 196 44 22 chr11 5035331 5035560 -145747993 - L1ME LINE L1 -347 5819 5586 1685 182 17 7 chr11 5035717 5036019 -145747534 - AluJb SINE Alu -7 305 1 1942 68 129 0 chr11 5037132 5037395 -145746158 - AluSc SINE Alu -12 297 1 182 171 24 0 chr11 5038040 5038081 -145745472 + C-rich Low_complexity Low_complexity 2 43 0 727 265 38 9 chr11 5038615 5038826 -145744727 + MIR SINE MIR 14 230 -32 278 264 19 55 chr11 5039389 5039479 -145744074 - MER5A DNA MER1_type 0 189 90 1122 183 115 0 chr11 5039969 5040248 -145743305 - MER33 DNA MER1_type -13 311 1 1290 235 81 40 chr11 5040315 5040745 -145742808 - L1ME1 LINE L1 -5 6161 5714 2421 57 0 0 chr11 5040891 5041216 -145742337 - AluY SINE Alu 0 325 1 217 359 165 0 chr11 5041687 5041893 -145741660 + MIR SINE MIR 19 258 -4 185 258 81 16 chr11 5042797 5042859 -145740694 + MIR SINE MIR 49 114 -148 2380 87 0 0 chr11 5042989 5043287 -145740266 + AluSx SINE Alu 1 298 -14 641 316 178 9 chr11 5043515 5043672 -145739881 - L2 LINE L2 -2 3311 3182 2078 82 0 11 chr11 5043672 5043951 -145739602 + AluY SINE Alu 1 276 -35 641 316 178 9 chr11 5043951 5044141 -145739412 - L2 LINE L2 -131 3182 2905 2121 127 0 0 chr11 5044187 5044487 -145739066 + AluSx SINE Alu 3 302 -10 1759 119 37 0 chr11 5045519 5045676 -145737877 - AluSx SINE Alu -22 290 117 240 35 0 0 chr11 5045676 5045705 -145737848 + (TG)n Simple_repeat Simple_repeat 2 30 0 1759 119 37 0 chr11 5045705 5045816 -145737737 - AluSx SINE Alu -195 117 12 1142 174 24 14 chr11 5047367 5047579 -145735974 - MER20 DNA MER1_type -5 214 1 2382 48 0 3 chr11 5048435 5048729 -145734824 + AluY SINE Alu 1 293 -18 308 269 167 43 chr11 5049291 5049477 -145734076 - L2 LINE L2 -955 2359 2151 199 313 83 10 chr11 5049532 5049628 -145733925 + L2 LINE L2 3193 3295 -18 433 145 96 0 chr11 5050148 5050231 -145733322 + AluSg/x SINE Alu 217 307 -3 710 72 0 0 chr11 5050361 5050458 -145733095 - AluSg/x SINE Alu -1 311 215 2170 86 0 10 chr11 5051162 5051454 -145732099 + AluSc SINE Alu 1 289 -20 10560 25 15 1 chr11 5151579 5152841 -145630712 + L1P LINE L1 3529 4808 -1338 1031 113 11 13 chr11 5152945 5154420 -145629133 + HSATII Satellite Satellite 1 1471 -1 785 100 0 21 chr11 5154443 5154583 -145628970 + HSATII Satellite Satellite 17 153 -17 911 121 23 14 chr11 5154599 5155087 -145628466 + HSATII Satellite Satellite 1 492 0 980 112 10 12 chr11 5155110 5156315 -145627238 + HSATII Satellite Satellite 1 1202 -27 998 108 8 14 chr11 5156342 5158476 -145625077 + HSATII Satellite Satellite 1 2120 -16 965 129 22 9 chr11 5158491 5158780 -145624773 + HSATII Satellite Satellite 1 292 -1 926 123 10 16 chr11 5158803 5160244 -145623309 + HSATII Satellite Satellite 1 1432 -1 1064 110 11 12 chr11 5160274 5164808 -145618745 + HSATII Satellite Satellite 1 4528 -23 941 120 15 14 chr11 5164823 5165454 -145618099 + HSATII Satellite Satellite 1 631 -137 935 113 6 12 chr11 5165467 5165961 -145617592 + HSATII Satellite Satellite 1 491 -99 977 99 9 16 chr11 5165990 5166564 -145616989 + HSATII Satellite Satellite 1 570 -16 998 104 8 18 chr11 5166602 5167100 -145616453 + HSATII Satellite Satellite 1 493 -23 974 132 12 13 chr11 5167115 5167566 -145615987 + HSATII Satellite Satellite 1 450 -1 959 110 13 12 chr11 5167596 5169348 -145614205 + HSATII Satellite Satellite 1 1754 -17 818 111 21 0 chr11 5169364 5169508 -145614045 + HSATII Satellite Satellite 1 147 -23 965 113 9 13 chr11 5169523 5169976 -145613577 + HSATII Satellite Satellite 1 451 -23 953 125 16 17 chr11 5169998 5171204 -145612349 + HSATII Satellite Satellite 1 1204 -1 998 110 17 12 chr11 5171234 5172967 -145610586 + HSATII Satellite Satellite 1 1741 -4 779 136 4 18 chr11 5172994 5173274 -145610279 + HSATII Satellite Satellite 1 276 -86 941 125 7 18 chr11 5173433 5174258 -145609295 + HSATII Satellite Satellite 1 816 0 998 117 9 14 chr11 5174281 5176010 -145607543 + HSATII Satellite Satellite 1 1720 -1 998 122 12 16 chr11 5176029 5176948 -145606605 + HSATII Satellite Satellite 1 915 -2 1031 115 19 12 chr11 5176979 5178695 -145604858 + HSATII Satellite Satellite 1 1727 -1 980 105 12 12 chr11 5178725 5180004 -145603549 + HSATII Satellite Satellite 1 1279 -23 953 126 15 19 chr11 5180026 5181232 -145602321 + HSATII Satellite Satellite 1 1201 -1 980 113 13 12 chr11 5181262 5182955 -145600598 + HSATII Satellite Satellite 1 1694 -51 932 109 7 15 chr11 5182989 5183582 -145599971 + HSATII Satellite Satellite 1 588 -11 694 149 18 18 chr11 5183615 5183838 -145599715 + HSATII Satellite Satellite 1 223 -94 980 98 6 14 chr11 5183938 5184585 -145598968 + HSATII Satellite Satellite 1 642 -26 977 121 11 16 chr11 5184610 5186831 -145596722 + HSATII Satellite Satellite 1 2210 -1 965 104 12 12 chr11 5186861 5188140 -145595413 + HSATII Satellite Satellite 1 1279 -23 932 117 18 20 chr11 5188162 5188897 -145594656 + HSATII Satellite Satellite 1 733 -1 887 140 9 20 chr11 5188923 5189368 -145594185 + HSATII Satellite Satellite 1 440 -1 980 107 12 12 chr11 5189398 5190674 -145592879 + HSATII Satellite Satellite 1 1276 -26 974 118 18 20 chr11 5190699 5191291 -145592262 + HSATII Satellite Satellite 1 590 0 1012 104 9 13 chr11 5191314 5192453 -145591100 + HSATII Satellite Satellite 1 1134 -23 1019 114 12 13 chr11 5192475 5194539 -145589014 + HSATII Satellite Satellite 1 2063 -1 1031 114 9 15 chr11 5194562 5200227 -145583326 + HSATII Satellite Satellite 1 5633 -23 998 115 11 16 chr11 5200242 5205100 -145578453 + HSATII Satellite Satellite 1 4833 -9 670 147 18 18 chr11 5205131 5205301 -145578252 + HSATII Satellite Satellite 1 170 0 907 122 10 13 chr11 5205326 5206488 -145577065 + HSATII Satellite Satellite 1 1158 -1 998 113 12 12 chr11 5206518 5210890 -145572663 + HSATII Satellite Satellite 1 4370 -8 1031 98 2 15 chr11 5210901 5211519 -145572034 + HSATII Satellite Satellite 1 610 -23 956 119 10 17 chr11 5211543 5212552 -145571001 + HSATII Satellite Satellite 1 1001 -19 980 111 11 11 chr11 5212571 5215411 -145568142 + HSATII Satellite Satellite 1 2840 -23 980 114 14 13 chr11 5215433 5217187 -145566366 + HSATII Satellite Satellite 1 1755 -23 1031 113 10 12 chr11 5217209 5222991 -145560562 + HSATII Satellite Satellite 1 5770 -15 998 118 13 14 chr11 5223005 5225945 -145557608 + HSATII Satellite Satellite 1 2936 -92 986 113 10 16 chr11 5226073 5227611 -145555942 + HSATII Satellite Satellite 1 1529 -9 781 129 18 18 chr11 5227642 5227812 -145555741 + HSATII Satellite Satellite 1 170 0 928 96 13 19 chr11 5227837 5228151 -145555402 + HSATII Satellite Satellite 1 312 -31 998 111 5 0 chr11 5228164 5228376 -145555177 + HSATII Satellite Satellite 1 213 -1 932 127 11 19 chr11 5228399 5229000 -145554553 + HSATII Satellite Satellite 1 596 -1 980 103 12 12 chr11 5229030 5230306 -145553247 + HSATII Satellite Satellite 1 1276 -26 965 137 14 19 chr11 5230331 5230776 -145552777 + HSATII Satellite Satellite 1 442 -1 982 114 12 12 chr11 5230806 5232090 -145551463 + HSATII Satellite Satellite 1 1285 -17 965 108 23 14 chr11 5232106 5232594 -145550959 + HSATII Satellite Satellite 1 492 0 944 121 9 15 chr11 5232617 5234200 -145549353 + HSATII Satellite Satellite 1 1573 -1 989 109 13 8 chr11 5234230 5235345 -145548208 + HSATII Satellite Satellite 1 1120 -8 965 103 7 19 chr11 5235356 5235977 -145547576 + HSATII Satellite Satellite 1 613 -23 932 143 14 19 chr11 5235999 5236444 -145547109 + HSATII Satellite Satellite 1 442 -1 1031 106 10 12 chr11 5236474 5239526 -145544027 + HSATII Satellite Satellite 1 3047 -23 980 117 10 16 chr11 5239539 5242609 -145540944 + HSATII Satellite Satellite 1 3051 -1 977 107 12 13 chr11 5242639 5244868 -145538685 + HSATII Satellite Satellite 1 2227 -27 980 112 14 13 chr11 5244884 5247650 -145535903 + HSATII Satellite Satellite 1 2766 0 965 119 9 17 chr11 5247681 5248517 -145535036 + HSATII Satellite Satellite 1 829 -1 998 114 13 14 chr11 5248547 5250908 -145532645 + HSATII Satellite Satellite 1 2358 0 27 62 0 0 chr11 5300929 5300977 -145482576 + AT_rich Low_complexity Low_complexity 1 48 0 6956 53 9 30 chr11 5300977 5301794 -145481759 - L1PA7 LINE L1 -4 6150 5349 2187 111 7 3 chr11 5301794 5302092 -145481461 + AluSp SINE Alu 1 299 -14 6956 53 9 30 chr11 5302092 5302454 -145481099 - L1PA7 LINE L1 -805 5349 4981 1041 241 38 70 chr11 5303391 5303902 -145479651 - PABL_B LTR ERV1 -21 646 10 3317 232 34 53 chr11 5304114 5305136 -145478417 + L1MB5 LINE L1 3156 4157 -1989 1389 124 16 31 chr11 5305136 5305393 -145478160 + L1MA3 LINE L1 6050 6302 -3 3317 232 34 53 chr11 5305393 5305470 -145478083 + L1MB5 LINE L1 4157 4234 -1912 2319 107 0 0 chr11 5305519 5305828 -145477725 - AluY SINE Alu -2 309 1 1952 200 51 51 chr11 5306246 5306795 -145476758 - L1PB4 LINE L1 -63 6093 5545 23 33 0 0 chr11 5307580 5307610 -145475943 + AT_rich Low_complexity Low_complexity 1 30 0 267 191 52 26 chr11 5309401 5309516 -145474037 + (TATAA)n Simple_repeat Simple_repeat 3 120 0 22 56 0 0 chr11 5309783 5309819 -145473734 + AT_rich Low_complexity Low_complexity 1 36 0 290 317 24 43 chr11 5310375 5310539 -145473014 + L2 LINE L2 1873 2033 -1281 278 276 0 13 chr11 5310582 5310658 -145472895 + L2 LINE L2 2164 2238 -1076 3578 234 23 26 chr11 5311085 5312082 -145471471 + L1MB5 LINE L1 4308 5301 -845 355 286 147 17 chr11 5312165 5312403 -145471150 + L1ME LINE L1 5525 5793 -377 1372 269 25 47 chr11 5312444 5312757 -145470796 + L1M4 LINE L1 2521 2839 -3307 220 20 59 39 chr11 5312757 5312808 -145470745 + (TA)n Simple_repeat Simple_repeat 1 52 0 1372 269 25 47 chr11 5312808 5312922 -145470631 + L1M4 LINE L1 2839 2954 -3192 1865 127 13 43 chr11 5312922 5313221 -145470332 + AluSx SINE Alu 2 291 -21 1372 269 25 47 chr11 5313221 5313521 -145470032 + L1M4 LINE L1 2954 3233 -2913 477 336 34 10 chr11 5313607 5313815 -145469738 + MIR SINE MIR 50 262 0 189 0 0 0 chr11 5314378 5314399 -145469154 + (A)n Simple_repeat Simple_repeat 1 21 0 653 174 16 5 chr11 5316059 5316245 -145467308 + L1MA4 LINE L1 6033 6297 -3 24 32 0 0 chr11 5316299 5316330 -145467223 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr11 5316680 5316708 -145466845 + AT_rich Low_complexity Low_complexity 1 28 0 2126 104 3 7 chr11 5316822 5317111 -145466442 - AluSc SINE Alu -21 288 1 195 187 165 44 chr11 5317209 5317300 -145466253 - L2 LINE L2 -4 3309 3208 21 0 0 0 chr11 5317553 5317574 -145465979 + AT_rich Low_complexity Low_complexity 1 21 0 209 321 71 9 chr11 5318369 5318481 -145465072 + MIR SINE MIR 137 255 -7 320 243 14 0 chr11 5319812 5319886 -145463667 - L1M4 LINE L1 -1983 4399 4325 * 336 229 16 16 chr11 5319884 5320006 -145463547 - L1M4 LINE L1 -3951 2433 2312 978 217 46 132 chr11 5320011 5320488 -145463065 + L1MB5 LINE L1 5326 5753 -431 2369 172 36 5 chr11 5320488 5320931 -145462622 - MSTB2 LTR MaLR 0 457 1 978 217 46 132 chr11 5320931 5320993 -145462560 + L1MB5 LINE L1 5753 5819 -365 604 220 16 44 chr11 5321227 5321409 -145462144 + L1MB5 LINE L1 5815 5991 -183 2399 82 7 0 chr11 5321587 5321892 -145461661 + AluSp SINE Alu 1 307 -6 2159 104 17 0 chr11 5322220 5322517 -145461036 + AluSq SINE Alu 1 302 -11 1085 177 14 50 chr11 5322678 5322898 -145460655 - AluJo SINE Alu -15 297 86 1899 129 26 26 chr11 5323469 5323779 -145459774 + AluSg SINE Alu 1 310 0 180 0 0 0 chr11 5324548 5324568 -145458985 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 294 282 46 8 chr11 5324628 5324769 -145458784 - MIR SINE MIR -64 144 13 21 0 0 0 chr11 5324860 5324881 -145458672 + AT_rich Low_complexity Low_complexity 1 21 0 256 352 37 0 chr11 5326627 5326735 -145456818 + MIR SINE MIR 18 129 -133 2329 103 3 0 chr11 5326736 5327048 -145456505 - AluSq SINE Alu 0 313 1 1571 111 0 8 chr11 5327095 5327339 -145456214 + L1MA6 LINE L1 6059 6300 0 28 29 0 0 chr11 5327679 5327714 -145455839 + AT_rich Low_complexity Low_complexity 1 35 0 1708 155 22 4 chr11 5327807 5328120 -145455433 - AluJb SINE Alu 0 318 1 381 22 0 0 chr11 5329880 5329926 -145453627 + (T)n Simple_repeat Simple_repeat 1 46 0 34 24 0 0 chr11 5329930 5329971 -145453582 + GC_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 5330205 5330226 -145453327 + AT_rich Low_complexity Low_complexity 1 21 0 928 180 15 34 chr11 5330355 5330561 -145452992 + L1MB3 LINE L1 5918 6119 -64 2322 66 3 0 chr11 5331006 5331295 -145452258 - AluY SINE Alu -21 290 1 964 295 102 24 chr11 5331536 5331781 -145451772 + L1ME LINE L1 48 273 -5797 2326 89 0 0 chr11 5331781 5332074 -145451479 + AluSg SINE Alu 1 293 -17 964 295 102 24 chr11 5332074 5332330 -145451223 + L1ME LINE L1 273 588 -5482 1152 159 15 5 chr11 5332703 5332898 -145450655 - LTR1 LTR ERV1 0 785 589 3028 48 3 0 chr11 5332898 5333271 -145450282 - L1PA6 LINE L1 -7 6147 5774 606 41 0 0 chr11 5333271 5333344 -145450209 + L1P2 LINE L1 5620 5692 -462 400 245 14 35 chr11 5333373 5333516 -145450037 + L1ME LINE L1 49 188 -5882 2544 181 66 34 chr11 5333518 5334075 -145449478 - LTR1 LTR ERV1 -203 582 8 2231 102 3 16 chr11 5335618 5335932 -145447621 - AluSx SINE Alu 0 312 3 614 272 82 47 chr11 5335977 5336404 -145447149 - L1M4 LINE L1 -2040 4106 3665 1378 186 42 0 chr11 5336915 5337222 -145446331 + MER33 DNA MER1_type 5 324 0 296 315 87 75 chr11 5338315 5338731 -145444822 - MLT1J2 LTR MaLR -10 440 20 2249 206 93 8 chr11 5339086 5339751 -145443802 - L1M4 LINE L1 -3108 3038 2317 2275 103 3 0 chr11 5339763 5340074 -145443479 - AluSx SINE Alu 0 312 1 2486 25 0 59 chr11 5340109 5340432 -145443121 - AluY SINE Alu -7 304 1 402 152 3 2 chr11 5340447 5340516 -145443037 + AluSp/q SINE Alu 236 296 -7 24 0 0 0 chr11 5340609 5340633 -145442920 + AT_rich Low_complexity Low_complexity 1 24 0 2202 110 10 0 chr11 5340919 5341218 -145442335 - AluSq SINE Alu -11 302 1 24 0 0 0 chr11 5341218 5341242 -145442311 + AT_rich Low_complexity Low_complexity 1 24 0 571 330 13 51 chr11 5341616 5341668 -145441885 - MIR SINE MIR -23 239 187 2299 96 0 3 chr11 5341668 5341971 -145441582 - AluSq SINE Alu -11 302 1 571 330 13 51 chr11 5341971 5342154 -145441399 - MIR SINE MIR -75 187 13 712 254 30 6 chr11 5342186 5342351 -145441202 + MER58A DNA MER1_type 24 192 -32 1689 74 0 0 chr11 5342351 5342576 -145440977 + AluSg/x SINE Alu 83 307 0 1082 232 46 127 chr11 5343231 5343536 -145440017 - L1MCa LINE L1 -5571 651 323 2346 82 16 0 chr11 5343536 5343840 -145439713 - AluSx SINE Alu 0 312 4 1082 232 46 127 chr11 5343840 5344011 -145439542 - L1MCa LINE L1 -5899 323 141 2136 87 0 75 chr11 5344011 5344344 -145439209 - AluSg SINE Alu -2 308 1 1082 232 46 127 chr11 5344344 5344436 -145439117 - L1MCa LINE L1 -6081 141 43 667 131 0 10 chr11 5345457 5345556 -145437997 + MER4A LTR ERV1 1 98 -566 1753 153 179 20 chr11 5345556 5345903 -145437650 + MER4A LTR ERV1 261 662 -2 2327 100 0 0 chr11 5346007 5346316 -145437237 + AluY SINE Alu 1 309 -2 1164 121 29 0 chr11 5346316 5346489 -145437064 + AluSp SINE Alu 134 311 -2 1511 115 71 21 chr11 5346616 5346941 -145436612 - MER4A LTR ERV1 0 655 252 743 117 8 16 chr11 5346963 5347091 -145436462 - MER4A LTR ERV1 -537 127 1 387 64 0 291 chr11 5347146 5347199 -145436354 + MADE1 DNA Mariner 1 8 -72 2314 73 0 44 chr11 5347199 5347514 -145436039 - AluSg SINE Alu -1 309 9 387 64 0 291 chr11 5347514 5347570 -145435983 + MADE1 DNA Mariner 8 78 -2 219 292 0 0 chr11 5348022 5348070 -145435483 + MER5B DNA MER1_type 2 49 -129 443 254 124 6 chr11 5348085 5348262 -145435291 - L1ME1 LINE L1 -6 6160 5963 1017 190 46 32 chr11 5348437 5348653 -145434900 - MER20 DNA MER1_type 0 219 1 195 42 0 0 chr11 5349219 5349243 -145434310 + (TC)n Simple_repeat Simple_repeat 1 24 0 351 259 86 91 chr11 5350391 5350442 -145433111 - L2 LINE L2 -412 2902 2852 2110 121 0 7 chr11 5350442 5350740 -145432813 + AluSq SINE Alu 3 298 -15 351 259 86 91 chr11 5350740 5350942 -145432611 - L2 LINE L2 -462 2852 2649 2180 93 7 14 chr11 5350942 5351232 -145432321 + AluSq SINE Alu 5 292 -21 351 259 86 91 chr11 5351232 5351328 -145432225 - L2 LINE L2 -665 2649 2554 1635 225 29 44 chr11 5352528 5352837 -145430716 - MLT1C LTR MaLR 0 467 164 2386 98 0 0 chr11 5352837 5353134 -145430419 + AluSx SINE Alu 1 297 -15 1635 225 29 44 chr11 5353134 5353233 -145430320 - MLT1C LTR MaLR -303 164 65 2427 62 3 0 chr11 5353544 5353848 -145429705 - AluY SINE Alu -6 305 1 373 337 143 10 chr11 5355639 5355939 -145427614 - L2 LINE L2 -50 3263 2924 718 130 35 0 chr11 5356566 5356681 -145426872 - AluSg1 SINE Alu -189 120 2 494 62 0 16 chr11 5356709 5356773 -145426780 - LTR7 LTR ERV1 -42 408 346 351 0 0 0 chr11 5357994 5358036 -145425517 + (CA)n Simple_repeat Simple_repeat 1 81 0 351 0 0 0 chr11 5358036 5358075 -145425478 + (CA)n Simple_repeat Simple_repeat 2 40 0 2328 80 3 7 chr11 5358798 5359099 -145424454 - AluY SINE Alu -11 300 1 1581 223 41 8 chr11 5359382 5359750 -145423803 + L1MB7 LINE L1 5447 5826 -358 7723 24 0 76 chr11 5359854 5361514 -145422039 + L1PA3 LINE L1 4573 6155 0 1858 216 31 52 chr11 5361608 5362151 -145421402 - L1MA9 LINE L1 -30 6282 5751 39 22 0 0 chr11 5362926 5362972 -145420581 + AT_rich Low_complexity Low_complexity 1 46 0 207 114 0 0 chr11 5364609 5364644 -145418909 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr11 5364894 5364916 -145418637 + AT_rich Low_complexity Low_complexity 1 22 0 210 37 0 0 chr11 5365703 5365730 -145417823 + (TTTTTA)n Simple_repeat Simple_repeat 4 30 0 2982 41 0 3 chr11 5365731 5366069 -145417484 - L1PA3 LINE L1 -3 6152 5816 615 251 53 112 chr11 5366630 5367004 -145416549 - MLT2C1 LTR ERVL -2 395 44 * 621 196 67 45 chr11 5366840 5367019 -145416534 - MLT1E3 LTR MaLR -393 231 49 428 316 22 7 chr11 5367024 5367163 -145416390 - MLT2F LTR ERVL -522 141 1 617 324 16 5 chr11 5367487 5367672 -145415881 + MER5A DNA MER1_type 3 189 0 228 200 0 0 chr11 5370032 5370092 -145413461 + (TATG)n Simple_repeat Simple_repeat 2 61 0 304 237 69 92 chr11 5370163 5370294 -145413259 - MIR SINE MIR -13 249 122 1738 60 9 0 chr11 5372824 5373040 -145410513 - L1PA5 LINE L1 -5 6149 5932 2383 81 7 3 chr11 5373046 5373353 -145410200 - AluY SINE Alu -3 308 1 2499 70 0 0 chr11 5374123 5374423 -145409130 - AluY SINE Alu -11 300 1 456 111 0 14 chr11 5375574 5375646 -145407907 - L1P LINE L1 -1268 4878 4808 2299 85 3 10 chr11 5376257 5376562 -145406991 - AluSq SINE Alu -10 303 1 3932 213 24 41 chr11 5376849 5377680 -145405873 + L1M2 LINE L1 1290 2101 -4748 2344 103 0 3 chr11 5377680 5377991 -145405562 + AluSg SINE Alu 1 310 0 3932 213 24 41 chr11 5377991 5378197 -145405356 + L1M2 LINE L1 2101 2309 -4540 1713 151 5 21 chr11 5378193 5378319 -145405234 + L1PA15 LINE L1 4366 4492 -1673 * 2466 90 0 3 chr11 5378319 5378630 -145404923 + AluY SINE Alu 1 310 -1 1713 151 5 21 chr11 5378630 5380221 -145403332 + L1PA15 LINE L1 4492 6158 -7 4648 234 55 7 chr11 5380224 5381228 -145402325 + ERVL LTR ERVL 2877 3928 -1836 * 5333 204 22 2 chr11 5381226 5382208 -145401345 + ERVL LTR ERVL 4325 5326 -438 2366 63 0 0 chr11 5382928 5383244 -145400309 - AluY SINE Alu 0 316 1 2214 118 0 0 chr11 5383648 5383935 -145399618 + AluSg SINE Alu 1 287 -23 288 303 58 10 chr11 5384576 5384730 -145398823 - MIR SINE MIR -64 144 13 330 161 42 8 chr11 5385353 5385471 -145398082 + (TA)n Simple_repeat Simple_repeat 1 122 0 301 175 10 136 chr11 5385483 5385586 -145397967 - L1MC4 LINE L1 -1339 6703 6614 2092 100 0 0 chr11 5386060 5386331 -145397222 - AluSq SINE Alu -12 301 31 1298 168 45 4 chr11 5386457 5386701 -145396852 - MSTB LTR MaLR -172 254 1 671 220 42 37 chr11 5386703 5386894 -145396659 + L1MA9 LINE L1 6083 6274 -38 199 362 116 15 chr11 5387097 5387296 -145396257 - MIR SINE MIR -26 236 18 23 54 0 0 chr11 5388333 5388370 -145395183 + AT_rich Low_complexity Low_complexity 1 37 0 267 326 71 14 chr11 5389185 5389326 -145394227 + MIR3 SINE MIR 7 155 -53 253 272 229 68 chr11 5390439 5390582 -145392971 - MLT1K LTR MaLR 0 588 469 1740 149 83 0 chr11 5390582 5390858 -145392695 + AluSx SINE Alu 1 299 -13 253 272 229 68 chr11 5390858 5391037 -145392516 - MLT1K LTR MaLR -119 469 214 2318 60 53 27 chr11 5391037 5391336 -145392217 - AluY SINE Alu -4 307 1 1476 191 67 0 chr11 5391831 5392098 -145391455 + AluJb SINE Alu 1 285 -27 2470 262 67 72 chr11 5392132 5393074 -145390479 + L1M4c LINE L1 818 1763 -4619 2070 137 3 0 chr11 5393074 5393374 -145390179 - AluSx SINE Alu -3 309 9 2470 262 67 72 chr11 5393374 5395065 -145388488 + L1M4c LINE L1 1763 3544 -2838 1544 251 33 17 chr11 5395107 5395566 -145387987 + L1M3e LINE L1 1 466 -6564 241 104 292 0 chr11 5395584 5395632 -145387921 + L1M4 LINE L1 4914 4975 -1171 * 969 195 37 18 chr11 5395631 5395903 -145387650 + L1MA8 LINE L1 5858 6134 -157 1443 79 0 0 chr11 5395903 5396081 -145387472 - AluY SINE Alu -15 296 119 590 180 0 0 chr11 5396088 5396188 -145387365 - MER45A DNA AcHobo -16 162 63 376 312 134 18 chr11 5396257 5396533 -145387020 - LTR16C LTR ERVL -25 466 159 219 154 0 0 chr11 5396533 5396572 -145386981 + T-rich Low_complexity Low_complexity 1 39 0 4751 15 2 0 chr11 5396573 5397114 -145386439 - L1PA2 LINE L1 -3 6152 5611 8777 27 3 0 chr11 5397114 5398435 -145385118 + L1PA2 LINE L1 4280 5604 -551 758 62 0 174 chr11 5398436 5398597 -145384956 - AluSq/x SINE Alu -180 133 1 328 336 19 0 chr11 5398597 5398704 -145384849 + L1M4c LINE L1 3771 3879 -2503 332 355 123 0 chr11 5401467 5401605 -145381948 + L2 LINE L2 2909 3063 -250 4043 68 20 31 chr11 5402090 5402669 -145380884 - PABL_A LTR ERV1 0 660 87 2219 108 0 0 chr11 5402669 5402965 -145380588 - AluSg SINE Alu -14 296 1 4043 68 20 31 chr11 5402965 5402991 -145380562 - PABL_A LTR ERV1 -573 87 62 1215 133 12 0 chr11 5402993 5403166 -145380387 + AluSq SINE Alu 4 178 -135 5062 110 207 102 chr11 5403630 5405037 -145378516 + pTR5 LTR ERV1 741 2295 -143 2333 54 48 0 chr11 5406459 5406574 -145376979 + AluY SINE Alu 1 109 -202 288 0 0 0 chr11 5406574 5406606 -145376947 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 2333 54 48 0 chr11 5406606 5406785 -145376768 + AluY SINE Alu 109 309 -2 327 310 85 99 chr11 5407431 5407552 -145376001 + L2 LINE L2 1626 1747 -1567 1477 156 35 44 chr11 5407552 5407891 -145375662 - L1MA7 LINE L1 0 6291 5956 327 310 85 99 chr11 5407891 5408620 -145374933 + L2 LINE L2 1747 2464 -850 323 325 62 58 chr11 5409110 5409402 -145374151 + L2 LINE L2 3016 3308 -5 514 147 68 0 chr11 5411453 5411583 -145371970 + L1MB1 LINE L1 6008 6161 -28 183 139 0 0 chr11 5413427 5413463 -145370090 + (CA)n Simple_repeat Simple_repeat 1 36 0 492 317 87 48 chr11 5413733 5414216 -145369337 + LTR33 LTR ERVL 16 517 -4 1963 152 0 41 chr11 5414909 5415225 -145368328 + AluJo SINE Alu 1 303 -9 22 0 0 0 chr11 5415305 5415327 -145368226 + AT_rich Low_complexity Low_complexity 1 22 0 1031 329 24 12 chr11 5415361 5415787 -145367766 + LTR16B LTR ERVL 34 464 0 1613 167 9 43 chr11 5416169 5416492 -145367061 + AluJb SINE Alu 1 312 0 1321 309 51 21 chr11 5416921 5417533 -145366020 + HERV16 LTR ERVL 947 1576 -3420 10072 225 23 53 chr11 5417597 5420277 -145363276 + L1P5 LINE L1 1973 4424 -2435 2184 118 0 25 chr11 5420277 5420591 -145362962 + AluSx SINE Alu 1 306 -6 10072 225 23 53 chr11 5420591 5422596 -145360957 + L1P5 LINE L1 4424 6488 -371 870 145 15 0 chr11 5422596 5422727 -145360826 + AluSq/x SINE Alu 1 133 -179 189 0 0 0 chr11 5422727 5422748 -145360805 + (A)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr11 5422943 5422966 -145360587 + AT_rich Low_complexity Low_complexity 1 23 0 375 257 0 0 chr11 5423175 5423288 -145360265 + L1P5 LINE L1 5668 5780 -376 574 214 5 102 chr11 5423293 5423499 -145360054 + AluJb SINE Alu 1 186 -126 350 242 0 40 chr11 5423549 5423676 -145359877 + FLAM_A SINE Alu 25 147 0 827 176 53 88 chr11 5423679 5423941 -145359612 + L1MA8 LINE L1 6035 6287 -4 22 0 0 0 chr11 5424169 5424191 -145359362 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 5424737 5424760 -145358793 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr11 5424901 5424925 -145358628 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr11 5425021 5425046 -145358507 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr11 5426097 5426120 -145357433 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr11 5427596 5427617 -145355936 + AT_rich Low_complexity Low_complexity 1 21 0 549 89 13 0 chr11 5427835 5427914 -145355639 + MADE1 DNA Mariner 1 80 0 21 36 0 0 chr11 5427924 5427952 -145355601 + AT_rich Low_complexity Low_complexity 1 28 0 186 167 0 0 chr11 5427968 5428004 -145355549 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 224 349 82 41 chr11 5428438 5428584 -145354969 + L2 LINE L2 2962 3113 -159 853 270 89 32 chr11 5429029 5429659 -145353894 - L1ME3A LINE L1 -58 6112 5451 1154 99 22 63 chr11 5429953 5430048 -145353505 - L1MA3 LINE L1 0 6305 6208 2153 118 17 0 chr11 5430048 5430336 -145353217 + AluSx SINE Alu 1 293 -19 1154 99 22 63 chr11 5430336 5430462 -145353091 - L1MA3 LINE L1 -97 6208 6093 320 232 19 39 chr11 5433168 5433306 -145350247 + (TAA)n Simple_repeat Simple_repeat 3 139 -15 1736 184 0 0 chr11 5433306 5433610 -145349943 + AluSx SINE Alu 9 312 0 320 232 19 39 chr11 5433610 5433626 -145349927 + (TAA)n Simple_repeat Simple_repeat 139 154 0 2812 19 0 0 chr11 5433829 5434139 -145349414 + AluYb8 SINE Alu 1 310 -8 771 284 23 31 chr11 5434675 5434932 -145348621 - MLT2D LTR ERVL 0 414 160 1726 159 0 45 chr11 5435191 5435500 -145348053 - AluJb SINE Alu -9 303 9 26 0 0 0 chr11 5435926 5435952 -145347601 + AT_rich Low_complexity Low_complexity 1 26 0 2903 157 14 6 chr11 5436778 5437287 -145346266 - LTR10D LTR ERV1 0 513 1 1911 180 91 28 chr11 5437738 5438199 -145345354 - LTR2B LTR ERV1 0 490 1 207 0 0 0 chr11 5438617 5438640 -145344913 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 703 146 0 90 chr11 5439268 5439412 -145344141 + FLAM_C SINE Alu 1 131 -2 1984 119 10 35 chr11 5439481 5439791 -145343762 - AluSx SINE Alu -10 302 1 21 36 0 0 chr11 5439794 5439822 -145343731 + AT_rich Low_complexity Low_complexity 1 28 0 2305 50 16 10 chr11 5440041 5440344 -145343209 + AluY SINE Alu 1 305 -6 1698 191 91 14 chr11 5440370 5440790 -145342763 - MLT1C LTR MaLR 0 467 16 530 331 134 9 chr11 5441612 5441956 -145341597 - L2 LINE L2 -1 3312 2926 389 229 131 56 chr11 5442018 5442323 -145341230 + L1MB7 LINE L1 5850 6177 -1 256 409 0 0 chr11 5442337 5442430 -145341123 - L2 LINE L2 -319 2994 2902 2210 95 0 7 chr11 5444296 5444607 -145338946 - AluSc SINE Alu 0 309 1 1813 255 35 52 chr11 5445405 5445847 -145337706 - L1MB7 LINE L1 -104 6080 5653 2947 6 0 0 chr11 5445847 5446165 -145337388 + AluYb8 SINE Alu 1 318 0 1813 255 35 52 chr11 5446165 5446432 -145337121 - L1MB7 LINE L1 -531 5653 5383 1288 221 20 57 chr11 5446476 5446712 -145336841 - L1MB7 LINE L1 -1741 4405 4189 1719 157 40 13 chr11 5446712 5447012 -145336541 - AluSx SINE Alu -4 308 1 1288 221 20 57 chr11 5447012 5447178 -145336375 - L1MB7 LINE L1 -1957 4189 4018 270 0 0 0 chr11 5447182 5447212 -145336341 + (T)n Simple_repeat Simple_repeat 1 30 0 1563 112 65 4 chr11 5447243 5447475 -145336078 - AluSx SINE Alu -14 298 53 1747 225 27 9 chr11 5447478 5447923 -145335630 - L1MB7 LINE L1 -2156 3990 3538 479 296 27 0 chr11 5447988 5448174 -145335379 - L1MB7 LINE L1 -3317 2829 2639 346 235 10 29 chr11 5448224 5448326 -145335227 - MLT1D LTR MaLR -8 497 398 760 190 95 28 chr11 5448327 5448506 -145335047 + MLT1C LTR MaLR 276 466 -1 379 157 26 85 chr11 5448508 5448661 -145334892 - L1MCa LINE L1 -4030 2185 2042 189 153 76 7 chr11 5448731 5448875 -145334678 + (TA)n Simple_repeat Simple_repeat 1 154 0 22 48 0 48 chr11 5448892 5448954 -145334599 + AT_rich Low_complexity Low_complexity 1 59 0 284 202 31 23 chr11 5448970 5449099 -145334454 + (TA)n Simple_repeat Simple_repeat 1 130 0 825 207 103 16 chr11 5449103 5449447 -145334106 - L1MCa LINE L1 -4199 2016 1706 229 220 20 90 chr11 5449548 5449648 -145333905 - L1M4 LINE L1 -1858 4288 4196 2775 120 21 14 chr11 5449661 5449981 -145333572 - L1PA16 LINE L1 -12 6154 5829 2422 84 0 0 chr11 5449981 5450289 -145333264 - AluY SINE Alu -1 310 3 2775 120 21 14 chr11 5450289 5450400 -145333153 - L1PA16 LINE L1 -337 5829 5720 2485 112 8 3 chr11 5450400 5450784 -145332769 + L1P4 LINE L1 5292 5677 -489 729 252 14 28 chr11 5450818 5451100 -145332453 - L1M4 LINE L1 -1948 4198 3921 * 780 235 63 48 chr11 5451086 5451418 -145332135 - L1M4 LINE L1 -847 5299 4963 226 362 60 60 chr11 5451587 5451888 -145331665 + MLT1K LTR MaLR 4 304 -284 602 192 57 6 chr11 5452990 5453167 -145330386 - MER53 DNA DNA -3 186 1 2078 119 0 7 chr11 5454134 5454450 -145329103 + AluSx SINE Alu 1 314 0 21 57 0 0 chr11 5454453 5454488 -145329065 + AT_rich Low_complexity Low_complexity 1 35 0 1356 109 0 0 chr11 5455324 5455507 -145328046 - AluSp SINE Alu -11 302 120 1328 226 147 22 chr11 5456384 5456799 -145326754 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chr11 5456869 5456890 -145326663 + AT_rich Low_complexity Low_complexity 1 21 0 246 355 23 17 chr11 5457052 5457224 -145326329 + MIR SINE MIR 40 212 -50 25 0 0 0 chr11 5457231 5457256 -145326297 + AT_rich Low_complexity Low_complexity 1 25 0 1455 194 126 55 chr11 5457643 5458065 -145325488 - MLT2B1 LTR ERVL 0 520 69 361 214 90 0 chr11 5458082 5458171 -145325382 - MLT2B1 LTR ERVL -416 99 3 214 205 26 0 chr11 5458278 5458356 -145325197 + (TA)n Simple_repeat Simple_repeat 2 81 0 2132 86 0 83 chr11 5458415 5458741 -145324812 - AluSq SINE Alu -14 299 1 1068 255 28 61 chr11 5459507 5460049 -145323504 - MLT1E1 LTR MaLR 0 593 23 3616 35 0 0 chr11 5460726 5461187 -145322366 - L1P LINE L1 -2802 3344 2884 * 10161 42 1 0 chr11 5461186 5462431 -145321122 + L1P LINE L1 3335 4580 -1566 3832 87 14 40 chr11 5462686 5463305 -145320248 - L1MA2 LINE L1 0 6304 5702 322 318 19 0 chr11 5463503 5463610 -145319943 + L1MC4 LINE L1 6608 6716 -1326 1440 254 42 26 chr11 5463751 5464181 -145319372 + L1MB5 LINE L1 5690 6126 -48 2829 104 42 82 chr11 5464192 5464768 -145318785 - L1MA1 LINE L1 0 6302 5750 786 50 0 20 chr11 5464770 5464871 -145318682 + L1MA1 LINE L1 5651 5749 -553 261 186 0 14 chr11 5464871 5464941 -145318612 + L1MB3 LINE L1 6115 6183 0 459 324 7 0 chr11 5465066 5465205 -145318348 - Charlie1 DNA MER1_type -2621 140 1 2328 107 0 3 chr11 5465633 5465941 -145317612 - AluSq SINE Alu -6 307 1 236 210 16 0 chr11 5466858 5466920 -145316633 + (TGAA)n Simple_repeat Simple_repeat 3 65 0 1156 155 117 29 chr11 5467246 5467485 -145316068 - L1MA4 LINE L1 -388 5912 5653 2062 159 26 5 chr11 5467486 5467875 -145315678 + L1MA4 LINE L1 5899 6295 -5 236 372 53 21 chr11 5469383 5469571 -145313982 - MIR SINE MIR -13 249 56 282 287 70 17 chr11 5469740 5469855 -145313698 + MIR SINE MIR 53 173 -89 953 202 33 24 chr11 5471002 5471333 -145312220 + L1MA9 LINE L1 3125 3458 -2688 * 1161 166 5 0 chr11 5471308 5471519 -145312034 + L1MA9 LINE L1 4803 5014 -1132 27 0 0 0 chr11 5472797 5472824 -145310729 + AT_rich Low_complexity Low_complexity 1 27 0 2019 118 14 0 chr11 5475132 5475429 -145308124 + AluSx SINE Alu 1 301 -11 1699 199 37 20 chr11 5475624 5476026 -145307527 + L1MA9 LINE L1 5743 6151 -161 34 24 0 0 chr11 5476192 5476233 -145307320 + AT_rich Low_complexity Low_complexity 1 41 0 2070 89 40 6 chr11 5476237 5476562 -145306991 - L1MA1 LINE L1 0 6302 5967 1069 292 18 12 chr11 5477451 5477783 -145305770 + L1M4 LINE L1 361 694 -5848 1374 214 37 29 chr11 5477931 5478282 -145305271 + L1M4 LINE L1 4477 4830 -1814 1312 274 19 7 chr11 5478287 5478717 -145304836 + L1M4 LINE L1 4965 5399 -1245 264 108 0 0 chr11 5478729 5478766 -145304787 + L1MA7 LINE L1 6072 6108 -183 * 7392 258 18 6 chr11 5478751 5480850 -145302703 - L1 LINE L1 -1810 4336 2213 2785 206 186 12 chr11 5480849 5481739 -145301814 + L1 LINE L1 4307 5351 -795 * 661 44 2 1 chr11 5481839 5481929 -145301624 - L1MC/D LINE L1 -356 5799 5707 392 245 27 27 chr11 5482463 5482610 -145300943 - L1ME LINE L1 -381 5789 5643 23 0 0 0 chr11 5484629 5484652 -145298901 + AT_rich Low_complexity Low_complexity 1 23 0 1143 176 42 0 chr11 5485872 5486138 -145297415 - L1ME LINE L1 -743 5403 5164 1110 86 0 6 chr11 5486145 5486307 -145297246 + L1PA12 LINE L1 6008 6168 0 301 289 74 33 chr11 5486939 5487181 -145296372 - L1ME LINE L1 -1818 4328 4077 25 0 0 0 chr11 5487321 5487346 -145296207 + AT_rich Low_complexity Low_complexity 1 25 0 289 269 53 30 chr11 5487346 5487410 -145296143 + L1M4 LINE L1 4323 4384 -1762 5745 25 1 6 chr11 5487410 5488132 -145295421 + L1PA4 LINE L1 5463 6181 0 289 269 53 30 chr11 5488132 5488330 -145295223 + L1M4 LINE L1 4384 4592 -1554 310 356 56 0 chr11 5488422 5488582 -145294971 + L1M4 LINE L1 4698 4866 -1280 474 259 0 0 chr11 5488719 5488827 -145294726 + L1M2a LINE L1 8 115 -7053 3837 184 45 21 chr11 5488836 5489926 -145293627 + L1M2a LINE L1 1524 2655 -4513 382 378 22 6 chr11 5490000 5490180 -145293373 - L2 LINE L2 -2926 388 206 216 211 19 0 chr11 5492081 5492133 -145291420 + CT-rich Low_complexity Low_complexity 2 54 0 259 283 106 35 chr11 5492873 5493071 -145290482 - MIR SINE MIR 0 262 51 268 141 14 14 chr11 5494096 5494167 -145289386 + CT-rich Low_complexity Low_complexity 2 72 0 859 245 102 32 chr11 5494906 5495351 -145288202 - Charlie1b DNA MER1_type -44 479 6 3189 68 13 44 chr11 5497221 5497625 -145285928 + MLT2A1 LTR ERVL 1 391 -53 225 0 0 0 chr11 5497625 5497650 -145285903 + (CA)n Simple_repeat Simple_repeat 2 26 0 3189 68 13 44 chr11 5497650 5497703 -145285850 + MLT2A1 LTR ERVL 391 444 0 206 363 55 11 chr11 5498437 5498528 -145285025 - MIR3 SINE MIR -3 205 111 2874 149 114 5 chr11 5499269 5499840 -145283713 - LTR24C LTR ERV1 0 635 3 1125 240 10 13 chr11 5500291 5500578 -145282975 - L1P3 LINE L1 -561 5611 5322 260 260 39 13 chr11 5500743 5500820 -145282733 + Tigger5 DNA MER2_type 1 79 -2244 1409 67 0 10 chr11 5501150 5501344 -145282209 + L1M1 LINE L1 5625 5816 -486 371 180 0 0 chr11 5501344 5501405 -145282148 + Tigger5 DNA MER2_type 2262 2322 -1 27 49 0 0 chr11 5502832 5502873 -145280680 + AT_rich Low_complexity Low_complexity 1 41 0 1294 112 28 28 chr11 5502877 5502974 -145280579 - L1PA16 LINE L1 -9 6157 6061 1661 143 62 54 chr11 5502974 5503346 -145280207 + THE1C LTR MaLR 1 375 0 1294 112 28 28 chr11 5503346 5503462 -145280091 - L1PA16 LINE L1 -104 6062 5944 199 309 15 15 chr11 5503975 5504043 -145279510 - MIR SINE MIR -63 145 78 580 306 53 51 chr11 5505079 5505474 -145278079 + LTR16A1 LTR ERVL 62 457 0 932 211 22 0 chr11 5505625 5505810 -145277743 - MER5A DNA MER1_type 0 189 1 1001 246 0 5 chr11 5506170 5506385 -145277168 - MER58A DNA MER1_type 0 224 11 1871 151 47 0 chr11 5507199 5507497 -145276056 + AluSx SINE Alu 1 312 0 1895 81 0 67 chr11 5507574 5507857 -145275696 + AluY SINE Alu 36 299 -12 265 252 87 26 chr11 5508244 5508359 -145275194 + MIR SINE MIR 113 234 -28 4489 184 27 30 chr11 5508554 5509294 -145274259 - L1PA16 LINE L1 -16 6150 5409 1725 180 14 0 chr11 5509294 5509577 -145273976 - AluJb SINE Alu -25 287 1 4489 184 27 30 chr11 5509577 5510714 -145272839 - L1PA16 LINE L1 -757 5409 4285 25 0 0 0 chr11 5511623 5511648 -145271905 + AT_rich Low_complexity Low_complexity 1 25 0 252 0 0 0 chr11 5511794 5511822 -145271731 + (CA)n Simple_repeat Simple_repeat 2 29 0 3548 212 14 16 chr11 5513691 5514987 -145268566 + L1MB3 LINE L1 4498 5787 -396 322 173 12 25 chr11 5514989 5515070 -145268483 + (TATG)n Simple_repeat Simple_repeat 3 82 0 2078 162 15 8 chr11 5515074 5515469 -145268084 + L1MB3 LINE L1 5786 6183 0 1623 152 82 0 chr11 5515654 5515924 -145267629 - AluSg SINE Alu -18 292 1 406 293 75 40 chr11 5516815 5517337 -145266216 + L1ME4a LINE L1 5582 6121 0 300 164 119 0 chr11 5520497 5520564 -145262989 + L1PA15 LINE L1 6089 6163 -2 267 255 39 20 chr11 5520840 5520942 -145262611 - Charlie8 DNA MER1_type -2231 186 83 765 250 59 0 chr11 5521030 5521234 -145262319 + L1PA16 LINE L1 5951 6166 0 22 0 0 0 chr11 5521306 5521328 -145262225 + AT_rich Low_complexity Low_complexity 1 22 0 305 339 35 29 chr11 5521631 5521802 -145261751 + MIR SINE MIR 91 262 0 1849 171 3 7 chr11 5521912 5522216 -145261337 - AluSx SINE Alu -9 303 1 197 348 22 11 chr11 5522670 5522759 -145260794 - L2 LINE L2 -449 2865 2776 324 48 0 0 chr11 5523076 5523118 -145260435 + (CA)n Simple_repeat Simple_repeat 1 42 0 684 220 28 98 chr11 5523192 5523406 -145260147 - MIR SINE MIR -62 200 2 2277 91 109 0 chr11 5523560 5523900 -145259653 + MER51B LTR ERV1 1 377 0 26 0 0 0 chr11 5524205 5524231 -145259322 + AT_rich Low_complexity Low_complexity 1 26 0 1847 145 19 26 chr11 5524288 5524453 -145259100 + AluSx SINE Alu 1 166 -146 2263 142 28 14 chr11 5524453 5524812 -145258741 + THE1B LTR MaLR 1 364 0 11646 87 10 3 chr11 5524812 5526380 -145257173 + THE1B-int LTR MaLR 1 1580 0 2315 124 42 14 chr11 5526380 5526734 -145256819 + THE1B LTR MaLR 1 364 0 1847 145 19 26 chr11 5526734 5526876 -145256677 + AluSx SINE Alu 163 308 -4 200 400 0 0 chr11 5527018 5527098 -145256455 - L2 LINE L2 -246 3067 2988 2362 172 24 11 chr11 5527189 5527654 -145255899 - L1MA8 LINE L1 -347 5944 5474 209 192 39 0 chr11 5528195 5528247 -145255306 + A-rich Low_complexity Low_complexity 5 58 0 4840 31 0 3 chr11 5528635 5529213 -145254340 + L1PA4 LINE L1 5580 6155 0 412 75 0 0 chr11 5529214 5529267 -145254286 + L1PA10 LINE L1 5818 5870 -298 22 0 0 0 chr11 5529267 5529289 -145254264 + AT_rich Low_complexity Low_complexity 1 22 0 783 117 0 66 chr11 5529553 5529690 -145253863 - MER1B DNA MER1_type 0 339 212 3618 107 15 0 chr11 5529700 5530307 -145253246 - L1PBa LINE L1 -5015 1848 1085 3926 148 96 3 chr11 5530324 5531068 -145252485 - L1PBa LINE L1 -5739 1124 160 3726 191 19 0 chr11 5531068 5531823 -145251730 + L1MA7 LINE L1 5523 6291 0 1194 187 0 35 chr11 5531988 5532218 -145251335 - AluJb SINE Alu -12 300 79 267 404 40 27 chr11 5532256 5532540 -145251013 - L2 LINE L2 -285 2987 2702 507 232 63 7 chr11 5532827 5532969 -145250584 - L1MA10 LINE L1 -10 6324 6175 31 44 0 0 chr11 5532972 5533017 -145250536 + AT_rich Low_complexity Low_complexity 1 45 0 478 265 15 22 chr11 5533023 5533159 -145250394 + MLT1F1 LTR MaLR 1 135 -407 1312 285 9 6 chr11 5533159 5533482 -145250071 + L1M3c LINE L1 7 330 -5811 493 248 9 0 chr11 5533480 5533589 -145249964 - L1M3c LINE L1 -5695 446 337 * 1627 148 45 7 chr11 5533590 5533753 -145249800 + L1MA9 LINE L1 5987 6142 -170 180 77 0 0 chr11 5533753 5533779 -145249774 + (CA)n Simple_repeat Simple_repeat 2 27 0 1627 148 45 7 chr11 5533779 5533925 -145249628 + L1MA9 LINE L1 6142 6308 -4 786 287 31 11 chr11 5534097 5534358 -145249195 + MLT1F1 LTR MaLR 302 567 0 3488 38 2 29 chr11 5534520 5534973 -145248580 - L1PA6 LINE L1 -6 6148 5708 1403 69 0 0 chr11 5534973 5535148 -145248405 + L1PA6 LINE L1 5544 5718 -436 * 6348 199 9 4 chr11 5535132 5536412 -145247141 - L1PA15-16 LINE L1 -1586 5263 3977 3789 246 16 19 chr11 5536409 5537671 -145245882 - L1PA15-16 LINE L1 -3684 3165 1895 * 480 18 0 0 chr11 5537674 5537731 -145245822 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2220 153 42 83 chr11 5537821 5537917 -145245636 + L1MA4 LINE L1 5762 5860 -440 1895 122 46 20 chr11 5537917 5538221 -145245332 + AluSx SINE Alu 1 312 0 2220 153 42 83 chr11 5538221 5538678 -145244875 + L1MA4 LINE L1 5860 6292 -8 216 97 0 0 chr11 5539038 5539069 -145244484 + (CA)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr11 5539784 5539805 -145243748 + AT_rich Low_complexity Low_complexity 1 21 0 3171 90 0 0 chr11 5541439 5541871 -145241682 - L1PA7 LINE L1 0 6154 5723 325 55 68 0 chr11 5543114 5543187 -145240366 + (TA)n Simple_repeat Simple_repeat 2 79 0 23 0 0 0 chr11 5543193 5543216 -145240337 + AT_rich Low_complexity Low_complexity 1 23 0 324 133 36 0 chr11 5544592 5544675 -145238878 + CT-rich Low_complexity Low_complexity 2 87 0 801 357 65 15 chr11 5544873 5545349 -145238204 + L2 LINE L2 2814 3313 0 310 315 79 43 chr11 5545642 5545947 -145237606 + L1M4 LINE L1 2963 3278 -2868 2118 20 0 0 chr11 5545958 5546204 -145237349 - L1PA4 LINE L1 -5 6150 5905 242 237 151 0 chr11 5546512 5546605 -145236948 - MLT1E LTR MaLR -167 400 294 198 0 0 0 chr11 5546619 5546641 -145236912 + (T)n Simple_repeat Simple_repeat 1 22 0 231 94 0 0 chr11 5546724 5546756 -145236797 - L1P LINE L1 -746 5426 5395 2915 62 20 20 chr11 5546756 5547160 -145236393 + L1PA8 LINE L1 5769 6172 0 506 285 13 7 chr11 5547197 5547348 -145236205 - MLT1E LTR MaLR -439 154 3 471 274 85 33 chr11 5547349 5547619 -145235934 + L1ME3A LINE L1 5721 6004 -166 1017 241 133 22 chr11 5547651 5547975 -145235578 - MLT2B1 LTR ERVL -158 362 3 301 322 41 16 chr11 5547979 5548100 -145235453 + L1ME3A LINE L1 6043 6166 -4 218 175 48 0 chr11 5548395 5548458 -145235095 + (AATAG)n Simple_repeat Simple_repeat 4 69 0 5049 179 18 12 chr11 5549289 5551106 -145232447 - L1PB4 LINE L1 -8 6148 4315 21 36 0 0 chr11 5551111 5551139 -145232414 + AT_rich Low_complexity Low_complexity 1 28 0 2716 159 11 0 chr11 5551174 5551632 -145231921 - L1PA16 LINE L1 -105 6061 5599 * 3978 193 30 68 chr11 5551628 5553114 -145230439 + L1PA16 LINE L1 4186 5600 -566 2269 218 19 0 chr11 5553111 5553625 -145229928 - L1PB4 LINE L1 -1818 4328 3805 * 202 395 35 0 chr11 5555341 5555455 -145228098 + MIR SINE MIR 67 184 -78 189 0 0 0 chr11 5558175 5558196 -145225357 + (GA)n Simple_repeat Simple_repeat 2 22 0 2712 140 39 16 chr11 5559337 5559824 -145223729 + L1PA16 LINE L1 5660 6157 -9 278 54 0 0 chr11 5559826 5559863 -145223690 + L1MA6 LINE L1 6112 6148 -152 12353 33 0 0 chr11 5559873 5562111 -145221442 - L1PA4 LINE L1 -3 6152 3914 683 170 14 0 chr11 5562111 5562250 -145221303 + L1MA6 LINE L1 6154 6296 -4 3704 195 38 55 chr11 5562259 5562321 -145221232 + L1MB5 LINE L1 4900 4962 -1212 2129 122 3 3 chr11 5562321 5562615 -145220938 + AluSc SINE Alu 6 299 -10 3704 195 38 55 chr11 5562615 5563308 -145220245 + L1MB5 LINE L1 4962 5627 -547 2176 96 6 16 chr11 5563308 5563622 -145219931 + AluY SINE Alu 1 311 0 3704 195 38 55 chr11 5563622 5564145 -145219408 + L1MB5 LINE L1 5627 6157 -17 1322 237 95 94 chr11 5564669 5565214 -145218339 + MER77 LTR ERV1 54 599 -6 273 313 102 0 chr11 5565464 5565630 -145217923 - L1M4 LINE L1 -1307 4839 4657 421 321 57 24 chr11 5565734 5565943 -145217610 + MIR SINE MIR 47 262 0 182 219 16 0 chr11 5567352 5567416 -145216137 + (TA)n Simple_repeat Simple_repeat 2 66 0 243 139 25 13 chr11 5567939 5568018 -145215535 + C-rich Low_complexity Low_complexity 4 83 0 646 126 0 0 chr11 5568119 5568222 -145215331 - L1 LINE L1 -1565 4581 4479 520 265 36 14 chr11 5568256 5568479 -145215074 - L1M4 LINE L1 -1349 4797 4570 12106 148 45 10 chr11 5568479 5569193 -145214360 + Tigger1 DNA MER2_type 252 939 -1479 333 0 0 0 chr11 5569193 5569230 -145214323 + (TC)n Simple_repeat Simple_repeat 2 38 0 297 109 0 0 chr11 5569229 5569284 -145214269 + (TA)n Simple_repeat Simple_repeat 1 55 0 * 12106 148 45 10 chr11 5569230 5569284 -145214269 + Tigger1 DNA MER2_type 939 990 -1428 2014 129 3 3 chr11 5569284 5569570 -145213983 - AluSq SINE Alu -27 286 1 12106 148 45 10 chr11 5569570 5570947 -145212606 + Tigger1 DNA MER2_type 990 2418 0 218 326 123 36 chr11 5572455 5572593 -145210960 + L3 LINE CR1 1304 1453 -124 1068 108 30 0 chr11 5572610 5572776 -145210777 + L1PA13 LINE L1 5993 6163 0 398 397 39 0 chr11 5573246 5573503 -145210050 - L2 LINE L2 -339 2975 2709 351 0 0 0 chr11 5573832 5573871 -145209682 + (CA)n Simple_repeat Simple_repeat 2 40 0 186 43 0 0 chr11 5573870 5573893 -145209660 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 210 143 0 0 chr11 5574037 5574072 -145209481 + (GAAA)n Simple_repeat Simple_repeat 4 38 0 444 182 26 0 chr11 5576774 5576851 -145206702 - MER2 DNA MER2_type 0 345 267 1125 173 20 10 chr11 5576877 5577079 -145206474 - MER2 DNA MER2_type -135 210 7 207 358 32 0 chr11 5577648 5577743 -145205810 - MIR SINE MIR -51 211 114 354 186 44 9 chr11 5578120 5578233 -145205320 + (CAGAGA)n Simple_repeat Simple_repeat 2 118 0 1306 228 140 33 chr11 5578907 5579409 -145204144 - LTR10B LTR ERV1 -3 544 1 5640 263 9 7 chr11 5579413 5580782 -145202771 - HERVI LTR ERV1 -2 7783 6412 1604 219 19 17 chr11 5581130 5581491 -145202062 - HERVI LTR ERV1 -3737 3159 2798 622 198 9 0 chr11 5581462 5581578 -145201975 - HERVI LTR ERV1 -2164 4485 4369 * 299 211 33 78 chr11 5581598 5581688 -145201865 - HERVI LTR ERV1 -2369 5416 5331 * 337 237 31 41 chr11 5581657 5581754 -145201799 - HERVI LTR ERV1 -2858 4927 4832 951 177 74 5 chr11 5581784 5582050 -145201503 - HERVI LTR ERV1 -3146 4639 4325 464 276 55 7 chr11 5582112 5582257 -145201296 - HERVI LTR ERV1 -3485 3164 3013 2594 197 50 68 chr11 5582840 5583916 -145199637 - HERVI LTR ERV1 -6786 999 3 947 194 172 95 chr11 5583938 5584443 -145199110 - LTR10B LTR ERV1 -3 544 1 817 102 8 0 chr11 5584567 5584685 -145198868 - L1P LINE L1 -3161 2985 2867 42 20 0 0 chr11 5585843 5585892 -145197661 + AT_rich Low_complexity Low_complexity 1 49 0 5880 221 94 44 chr11 5585936 5586765 -145196788 + L1MDa LINE L1 2937 3724 -3841 1780 88 0 24 chr11 5586765 5587014 -145196539 + L1PA8A LINE L1 5882 6124 -7 2495 62 0 3 chr11 5587015 5587319 -145196234 + AluY SINE Alu 1 303 -8 5880 221 94 44 chr11 5587319 5589225 -145194328 + L1MDa LINE L1 3723 5839 -1726 23 54 0 0 chr11 5590148 5590185 -145193368 + AT_rich Low_complexity Low_complexity 1 37 0 229 250 25 0 chr11 5591608 5591688 -145191865 + L1MC4 LINE L1 6620 6701 -1341 14080 182 46 11 chr11 5591702 5596117 -145187436 - L1PB1 LINE L1 0 6867 2611 204 67 0 0 chr11 5596117 5596147 -145187406 + (TTAG)n Simple_repeat Simple_repeat 3 32 0 1823 145 30 0 chr11 5596147 5596416 -145187137 - AluSx SINE Alu -35 277 1 14080 182 46 11 chr11 5596416 5598024 -145185529 - L1PB1 LINE L1 -4255 2612 620 825 169 14 0 chr11 5598004 5598152 -145185401 - L1PB1 LINE L1 -6663 200 51 * 477 225 50 6 chr11 5598259 5598441 -145185112 - L1M4 LINE L1 -2929 3217 3028 764 207 0 0 chr11 5598464 5598609 -145184944 - MSTD-int LTR MaLR -1589 146 2 1975 155 58 56 chr11 5598609 5599002 -145184551 - MSTD LTR MaLR -2 394 1 1154 44 0 0 chr11 5599547 5599684 -145183869 + L1PA3 LINE L1 6016 6152 -3 397 322 52 17 chr11 5600454 5600687 -145182866 - MIR SINE MIR -10 252 12 355 266 18 9 chr11 5600795 5600908 -145182645 - LTR67 LTR ERVL -4 553 440 31100 54 37 3 chr11 5601596 5605552 -145178001 + L1P LINE L1 13 4103 -2043 401 230 11 0 chr11 5605558 5605645 -145177908 + LTR26 LTR ERV1 516 603 0 684 314 14 35 chr11 5605667 5605954 -145177599 + L1ME LINE L1 188 468 -5602 606 94 24 0 chr11 5605957 5606042 -145177511 + L1P LINE L1 12 98 -6048 * 6745 66 2 19 chr11 5606036 5606924 -145176629 + L1P LINE L1 617 1489 -4657 10917 24 0 1 chr11 5606924 5608961 -145174592 + L1PA4 LINE L1 4114 6153 -2 1071 304 24 28 chr11 5608967 5609507 -145174046 + L1ME LINE L1 456 993 -5077 * 13786 162 75 26 chr11 5609496 5612058 -145171495 + L1M1 LINE L1 27 2713 -4852 5091 123 7 8 chr11 5612521 5613735 -145169818 + L1PA11 LINE L1 4745 5954 -220 1411 231 119 22 chr11 5614700 5615246 -145168307 - Zaphod DNA AcHobo -241 3790 3192 298 268 55 88 chr11 5616508 5616780 -145166773 + HERVFH21 LTR ERV1 1366 1628 -6629 937 283 57 56 chr11 5616966 5617993 -145165560 + HERVFH21 LTR ERV1 885 1923 -4731 2308 293 60 62 chr11 5618030 5620500 -145163053 + HERVFH21 LTR ERV1 1765 4940 -2348 335 126 27 35 chr11 5620949 5621022 -145162531 + HERVFH21 LTR ERV1 4614 4783 -1746 206 179 51 64 chr11 5621032 5621110 -145162443 + L2 LINE L2 2997 3073 -199 1042 80 7 7 chr11 5621142 5621279 -145162274 + AluSp SINE Alu 1 137 -176 9524 51 121 14 chr11 5621282 5622528 -145161025 + SVA Other Other 7 1386 0 702 285 63 59 chr11 5622529 5623054 -145160499 + HERVFH21 LTR ERV1 4686 5322 -1207 451 234 49 40 chr11 5624722 5624909 -145158644 + HERVFH21 LTR ERV1 4202 7147 -245 291 208 39 0 chr11 5625133 5625210 -145158343 + HERVFH21 LTR ERV1 6446 6525 -4 488 270 56 113 chr11 5627297 5627811 -145155742 - MLT1G LTR MaLR -42 548 64 1687 285 31 34 chr11 5627922 5628505 -145155048 + L1MEc LINE L1 39 619 -5777 577 227 78 17 chr11 5630883 5631062 -145152491 + L1P LINE L1 4254 4441 -1705 2266 99 0 29 chr11 5632571 5632884 -145150669 + AluSc SINE Alu 1 304 -5 293 97 16 97 chr11 5633174 5633236 -145150317 - U2 snRNA snRNA -131 57 1 203 167 0 21 chr11 5636095 5636143 -145147410 + CT-rich Low_complexity Low_complexity 2 48 0 202 200 0 0 chr11 5636687 5636727 -145146826 + (CA)n Simple_repeat Simple_repeat 1 40 0 1331 201 23 10 chr11 5637846 5638156 -145145397 - MER33 DNA MER1_type -22 302 1 183 100 0 0 chr11 5638852 5638882 -145144671 + (TTTTTA)n Simple_repeat Simple_repeat 3 32 0 206 206 44 0 chr11 5638891 5638959 -145144594 + (TTAA)n Simple_repeat Simple_repeat 1 71 0 * 215 187 53 41 chr11 5638923 5639094 -145144459 + (TATAA)n Simple_repeat Simple_repeat 1 173 0 505 94 9 113 chr11 5642627 5642733 -145140820 + LTR7 LTR ERV1 354 448 -2 14947 80 8 115 chr11 5642735 5645306 -145138247 + HERVH LTR ERV1 1 2297 -5416 1454 214 30 12 chr11 5645410 5645836 -145137717 - L1M4 LINE L1 -2976 3170 2737 195 370 30 15 chr11 5646857 5646992 -145136561 - L2 LINE L2 -13 3300 3164 26 0 0 0 chr11 5647729 5647755 -145135798 + AT_rich Low_complexity Low_complexity 1 26 0 305 26 0 0 chr11 5648797 5648836 -145134717 - L1PA16 LINE L1 -5 6161 6123 4621 154 11 4 chr11 5648960 5649772 -145133781 - L1PA16 LINE L1 -41 6125 5308 22 56 0 0 chr11 5650057 5650093 -145133460 + AT_rich Low_complexity Low_complexity 1 36 0 234 347 54 27 chr11 5650173 5650320 -145133233 - L2 LINE L2 0 3272 3122 693 341 42 59 chr11 5651052 5651641 -145131912 + L1MEc LINE L1 210 788 -5608 1877 156 3 6 chr11 5651649 5651977 -145131576 - MER50 LTR ERV1 -24 710 384 320 73 91 0 chr11 5652090 5652145 -145131408 + L1PA15 LINE L1 6106 6165 0 21 0 0 0 chr11 5652993 5653014 -145130539 + AT_rich Low_complexity Low_complexity 1 21 0 707 124 16 47 chr11 5653150 5653279 -145130274 + LTR8 LTR ERV1 567 691 0 7817 102 15 51 chr11 5653279 5654576 -145128977 + HUERS-P1 LTR ERV1 1 1250 -5013 189 94 0 0 chr11 5654589 5654621 -145128932 + (TC)n Simple_repeat Simple_repeat 1 32 0 8124 123 25 56 chr11 5654621 5656167 -145127386 + HUERS-P1 LTR ERV1 1217 2713 -3550 287 242 0 22 chr11 5656171 5656262 -145127291 - L1M4 LINE L1 -2467 3679 3591 21 71 0 0 chr11 5656351 5656393 -145127160 + AT_rich Low_complexity Low_complexity 1 42 0 1278 262 42 39 chr11 5656604 5657036 -145126517 - L1MEc LINE L1 -5928 468 36 2196 124 0 0 chr11 5657166 5657465 -145126088 + AluSp SINE Alu 1 299 -14 2004 128 59 0 chr11 5658557 5658846 -145124707 - AluSg SINE Alu -4 306 1 246 340 71 29 chr11 5659786 5660024 -145123529 - L2 LINE L2 -1035 2279 2032 2154 135 0 3 chr11 5660561 5660857 -145122696 - AluSx SINE Alu -17 295 1 1336 131 0 15 chr11 5661758 5661957 -145121596 - AluSq SINE Alu -117 196 1 281 333 16 24 chr11 5662067 5662190 -145121363 - L2 LINE L2 -2 3311 3190 240 416 34 0 chr11 5662280 5662369 -145121184 + L2 LINE L2 3149 3240 -32 303 350 42 8 chr11 5662492 5662612 -145120941 - L2 LINE L2 -2068 1246 1123 715 284 141 30 chr11 5662615 5663084 -145120469 + LTR33 LTR ERVL 1 521 0 808 228 25 30 chr11 5663301 5663503 -145120050 + MIR SINE MIR 41 241 -21 228 241 0 0 chr11 5663987 5664045 -145119508 + GA-rich Low_complexity Low_complexity 3 60 0 228 271 14 14 chr11 5664049 5664119 -145119434 + L1MEd LINE L1 460 529 -5590 211 273 131 10 chr11 5666614 5666713 -145116840 + L3b LINE CR1 1268 1378 -205 443 357 151 24 chr11 5666878 5667621 -145115932 + L2 LINE L2 1938 2774 -540 23 54 0 0 chr11 5668181 5668218 -145115335 + AT_rich Low_complexity Low_complexity 1 37 0 352 96 0 0 chr11 5668333 5668385 -145115168 - MADE1 DNA Mariner 0 80 29 5475 132 19 9 chr11 5669144 5670709 -145112844 - L1MA1 LINE L1 -127 6175 4589 2205 163 25 83 chr11 5671246 5671496 -145112057 - MER66B LTR ERV1 0 486 280 2144 128 0 7 chr11 5671496 5671800 -145111753 - AluSx SINE Alu -10 302 1 2205 163 25 83 chr11 5671800 5672065 -145111488 - MER66B LTR ERV1 -206 280 1 282 152 0 0 chr11 5672899 5672945 -145110608 + HERVK11 LTR ERVK 6722 6767 -1186 * 413 167 10 31 chr11 5672936 5673032 -145110521 + HERVK11 LTR ERVK 6963 7056 -897 * 2589 63 0 0 chr11 5672989 5673321 -145110232 - HERVK11 LTR ERVK -4731 3222 2891 * 2932 87 52 0 chr11 5673307 5673733 -145109820 - HERVK11 LTR ERVK -6341 1612 1165 2161 118 24 9 chr11 5673708 5674303 -145109250 - HERVK11 LTR ERVK -7081 872 206 * 2218 110 3 0 chr11 5674300 5674618 -145108935 - HERVK11 LTR ERVK -7634 319 1 5128 151 40 53 chr11 5674618 5675704 -145107849 - MER11C LTR ERVK 0 1071 1 1898 56 4 8 chr11 5675874 5676140 -145107413 + LTR7 LTR ERV1 1 265 -185 1870 111 15 19 chr11 5676538 5676800 -145106753 + AluSg SINE Alu 37 297 -13 22 56 0 0 chr11 5676998 5677034 -145106519 + AT_rich Low_complexity Low_complexity 1 36 0 230 328 86 9 chr11 5677504 5677620 -145105933 + MIR SINE MIR 57 181 -81 1612 219 19 32 chr11 5677995 5678365 -145105188 - MLT1A1 LTR MaLR 0 365 1 1632 199 43 10 chr11 5679614 5680012 -145103541 + L1MA9 LINE L1 5872 6282 -30 193 151 38 19 chr11 5680019 5680072 -145103481 + GA-rich Low_complexity Low_complexity 3 56 0 418 269 43 14 chr11 5680971 5681112 -145102441 + MIR SINE MIR 45 189 -73 194 352 67 9 chr11 5681119 5681224 -145102329 - L2 LINE L2 0 3272 3162 261 311 59 0 chr11 5681305 5681440 -145102113 - MIR SINE MIR -1 261 119 523 158 38 22 chr11 5681447 5681564 -145101989 + MLT1C LTR MaLR 1 106 -361 333 301 131 11 chr11 5682028 5682211 -145101342 - L1MDa LINE L1 -4711 1418 1214 289 263 123 78 chr11 5682220 5682722 -145100831 - L1MDa LINE L1 -4931 1188 664 1244 230 24 68 chr11 5682751 5683133 -145100420 + MLT1A1 LTR MaLR 1 365 0 246 136 0 0 chr11 5683249 5683293 -145100260 + (TG)n Simple_repeat Simple_repeat 1 44 0 344 106 30 15 chr11 5683407 5683473 -145100080 + Tigger3(Golem) DNA MER2_type 2432 2498 -531 198 103 0 0 chr11 5683628 5683657 -145099896 + (TA)n Simple_repeat Simple_repeat 2 30 0 4846 188 152 107 chr11 5684019 5685681 -145097872 - MER52A LTR ERV1 0 1755 19 1676 304 50 17 chr11 5686017 5686661 -145096892 + L1M2b LINE L1 1163 1827 -5382 1682 205 44 0 chr11 5686662 5687004 -145096549 + MSTA LTR MaLR 1 357 -71 544 355 12 0 chr11 5687004 5687249 -145096304 + MSTA-int LTR MaLR 8 255 -1396 3484 193 44 31 chr11 5687349 5688146 -145095407 + MLT1A1-int LTR MaLR 49 855 -796 3026 174 61 2 chr11 5688144 5688718 -145094835 + MLT1A1-int LTR MaLR 1044 1651 0 * 2389 157 36 2 chr11 5688718 5689131 -145094422 + MSTA LTR MaLR 1 427 -1 4534 165 10 40 chr11 5689134 5689734 -145093819 + L1M2 LINE L1 1478 2036 -4813 862 128 0 0 chr11 5689734 5689851 -145093702 + 5S rRNA rRNA 1 117 -4 4534 165 10 40 chr11 5689851 5690284 -145093269 + L1M2 LINE L1 2036 2480 -4369 701 100 10 0 chr11 5690284 5690384 -145093169 - MSTA LTR MaLR -319 109 9 6168 201 47 17 chr11 5690384 5692128 -145091425 + L1M2 LINE L1 2767 4565 -2283 1415 157 7 54 chr11 5692128 5692422 -145091131 - THE1B LTR MaLR 0 364 85 220 324 74 19 chr11 5692551 5692659 -145090894 + MIR SINE MIR 40 153 -109 426 255 242 32 chr11 5695176 5695556 -145087997 + LTR50 LTR ERVL 1 460 -335 241 296 61 41 chr11 5698511 5698609 -145084944 + L2 LINE L2 3169 3268 -4 21 0 0 0 chr11 5698623 5698644 -145084909 + AT_rich Low_complexity Low_complexity 1 21 0 753 333 40 50 chr11 5700553 5700956 -145082597 + LTR16A LTR ERVL 52 450 0 22 56 0 0 chr11 5701289 5701325 -145082228 + AT_rich Low_complexity Low_complexity 1 36 0 180 253 287 0 chr11 5701696 5701783 -145081770 - L2 LINE L2 -493 2821 2710 358 336 141 35 chr11 5701885 5702153 -145081400 - L2 LINE L2 -2503 811 490 180 111 0 0 chr11 5702153 5702180 -145081373 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 358 336 141 35 chr11 5702180 5702286 -145081267 - L2 LINE L2 -2824 490 397 198 252 34 101 chr11 5702308 5702427 -145081126 + MIR SINE MIR 136 246 -16 198 279 118 0 chr11 5702838 5702906 -145080647 - L2 LINE L2 0 3313 3238 32 26 0 0 chr11 5702951 5702990 -145080563 + AT_rich Low_complexity Low_complexity 1 39 0 193 282 59 24 chr11 5705276 5705361 -145078192 + MIR SINE MIR 17 104 -104 241 376 43 0 chr11 5705964 5706081 -145077472 - MIR3 SINE MIR -53 155 34 409 303 32 27 chr11 5706634 5706806 -145076747 + MIR SINE MIR 34 206 -56 3716 58 0 9 chr11 5707052 5707504 -145076049 - LTR7 LTR ERV1 -2 448 1 2449 92 48 13 chr11 5707504 5707883 -145075670 - HERVH LTR ERV1 0 7713 7322 1449 120 18 5 chr11 5707881 5708098 -145075455 - HERVH LTR ERV1 -1894 5819 5600 * 4312 153 1 1 chr11 5708099 5708761 -145074792 - HERVH LTR ERV1 -2564 5149 4488 2991 126 7 2 chr11 5708763 5709224 -145074329 - HERVH LTR ERV1 -3720 3993 3531 248 352 62 14 chr11 5709329 5709474 -145074079 + MIR SINE MIR 100 251 -11 5920 37 0 4 chr11 5712004 5712679 -145070874 - L1PA4 LINE L1 0 6155 5484 210 143 0 0 chr11 5716384 5716419 -145067134 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 765 110 22 52 chr11 5716419 5716555 -145066998 - L1MA8 LINE L1 -507 5793 5662 2194 174 28 24 chr11 5716567 5717027 -145066526 + L1MA8 LINE L1 5825 6286 -5 640 252 53 27 chr11 5717238 5717424 -145066129 + MER33 DNA MER1_type 1 183 -93 576 179 62 0 chr11 5718823 5718968 -145064585 + MER33 DNA MER1_type 160 313 -11 266 329 174 18 chr11 5719228 5719447 -145064106 + L2 LINE L2 2595 2847 -467 715 369 47 8 chr11 5720081 5720444 -145063109 - LTR16A LTR ERVL -22 428 52 203 327 59 40 chr11 5722410 5722511 -145061042 - L2 LINE L2 -1 3271 3169 1003 142 7 13 chr11 5722861 5723016 -145060537 - L1PB3 LINE L1 -17 6137 5984 22 35 0 0 chr11 5723463 5723492 -145060061 + AT_rich Low_complexity Low_complexity 1 29 0 299 353 107 0 chr11 5723515 5723702 -145059851 - MIR SINE MIR -55 207 1 330 335 110 40 chr11 5724108 5724661 -145058892 - L2 LINE L2 -540 2774 2183 215 294 71 53 chr11 5725047 5725217 -145058336 + L2 LINE L2 1868 2040 -1274 301 370 95 23 chr11 5725838 5726354 -145057199 - L2 LINE L2 -1618 1696 1144 467 240 148 20 chr11 5729484 5729680 -145053873 + MLT1J LTR MaLR 283 503 -8 815 183 57 22 chr11 5730547 5730777 -145052776 + L1M4 LINE L1 2789 3026 -3120 2722 283 44 37 chr11 5730889 5731801 -145051752 + L1PA15 LINE L1 1 918 -5869 8100 247 34 13 chr11 5731809 5734844 -145048709 + L1PA15 LINE L1 1277 4396 -2401 7194 212 11 3 chr11 5735264 5737638 -145045915 + L1PA15 LINE L1 4431 6812 -4 567 233 39 22 chr11 5737641 5737873 -145045680 + L1M4 LINE L1 3140 3375 -2771 310 269 0 58 chr11 5737977 5738081 -145045472 + CT-rich Low_complexity Low_complexity 3 100 0 24 32 0 0 chr11 5738267 5738298 -145045255 + AT_rich Low_complexity Low_complexity 1 31 0 5996 30 1 1 chr11 5738312 5738975 -145044578 + L1PA4 LINE L1 5474 6136 -19 882 271 18 5 chr11 5739287 5739505 -145044048 - MIR SINE MIR -1 261 41 2252 108 0 0 chr11 5739797 5740092 -145043461 + AluSg SINE Alu 2 296 -14 830 268 91 40 chr11 5740092 5740488 -145043065 - LTR33 LTR ERVL -59 462 47 374 238 133 9 chr11 5740527 5740632 -145042921 + L2 LINE L2 1121 1238 -2076 261 348 52 9 chr11 5740739 5740854 -145042699 - L2 LINE L2 -4 3309 3190 26 0 0 0 chr11 5741022 5741048 -145042505 + AT_rich Low_complexity Low_complexity 1 26 0 493 108 15 0 chr11 5741308 5741373 -145042180 + AluJ/FLAM SINE Alu 2 67 -245 836 112 0 0 chr11 5741375 5741491 -145042062 + AluSq SINE Alu 102 217 -96 3022 143 9 2 chr11 5741591 5742053 -145041500 + MER75 DNA T2_type 14 478 -36 2017 126 23 0 chr11 5742565 5742866 -145040687 + AluSq SINE Alu 1 308 -5 242 344 80 16 chr11 5743488 5743613 -145039940 + L3 LINE CR1 1434 1566 -11 223 362 43 29 chr11 5743899 5744037 -145039516 - L2 LINE L2 -2667 647 508 4906 172 25 40 chr11 5744193 5745913 -145037640 - L1MA8 LINE L1 -17 7693 6006 9550 74 13 75 chr11 5745913 5747456 -145036097 + SVA Other Other 4 1386 -518 319 164 0 0 chr11 5747456 5747517 -145036036 - L1MA8 LINE L1 -1547 6018 5958 * 4828 200 36 15 chr11 5747513 5748211 -145035342 - L1MA8 LINE L1 -1923 5642 4905 2621 22 0 38 chr11 5748211 5748525 -145035028 - AluYb8 SINE Alu -7 311 10 4828 200 36 15 chr11 5748525 5749056 -145034497 - L1MA8 LINE L1 -2660 4905 4387 2564 234 16 61 chr11 5749052 5750130 -145033423 - L1MA8 LINE L1 -4594 2971 2008 * 1312 229 32 12 chr11 5750331 5750745 -145032808 - L1MA8 LINE L1 -6685 804 84 184 388 17 17 chr11 5751438 5751554 -145031999 - L2 LINE L2 -184 3088 2973 1845 158 0 34 chr11 5751785 5752108 -145031445 + AluJb SINE Alu 1 312 0 351 0 0 0 chr11 5752590 5752629 -145030924 + (CA)n Simple_repeat Simple_repeat 2 40 0 322 342 146 45 chr11 5755067 5755733 -145027820 + L2 LINE L2 2026 2758 -556 195 287 20 99 chr11 5755768 5755869 -145027684 + L2 LINE L2 3145 3237 -35 287 115 39 0 chr11 5755888 5755940 -145027613 + GA-rich Low_complexity Low_complexity 3 56 0 180 318 47 9 chr11 5755946 5756053 -145027500 + L2 LINE L2 2798 2908 -406 184 337 54 43 chr11 5756399 5756491 -145027062 - L2 LINE L2 -166 3106 3014 494 337 168 28 chr11 5756754 5757599 -145025954 - L2 LINE L2 -553 2761 1799 287 374 133 29 chr11 5758818 5759232 -145024321 + L3 LINE CR1 935 1391 -186 21 0 0 0 chr11 5759930 5759951 -145023602 + AT_rich Low_complexity Low_complexity 1 21 0 554 250 47 26 chr11 5760252 5760444 -145023109 + MLT1J LTR MaLR 316 511 0 293 369 108 0 chr11 5760680 5760894 -145022659 - L2 LINE L2 -654 2660 2424 339 340 46 92 chr11 5760924 5761230 -145022323 - L2 LINE L2 -2042 1272 981 5288 128 16 16 chr11 5761506 5762553 -145021000 + L1PA15 LINE L1 5119 6165 0 480 280 25 30 chr11 5762770 5762970 -145020583 - L1PA12 LINE L1 -5198 2383 2185 1318 313 19 30 chr11 5763427 5764021 -145019532 - L1PA12 LINE L1 -6200 1374 788 192 152 0 0 chr11 5764220 5764253 -145019300 + T-rich Low_complexity Low_complexity 1 33 0 1409 227 35 28 chr11 5764257 5765044 -145018509 + L1ME LINE L1 4866 5662 -504 6180 30 0 0 chr11 5765099 5765860 -145017693 - L1PA4 LINE L1 0 6155 5395 3442 25 0 9 chr11 5765859 5766308 -145017245 + L1PA4 LINE L1 4953 5397 -749 * 355 270 40 69 chr11 5766313 5766639 -145016914 - L1M4 LINE L1 -1037 5109 4797 8750 121 8 7 chr11 5766642 5767928 -145015625 + HSMAR1 DNA Mariner 1 1287 0 15841 179 19 9 chr11 5767929 5772181 -145011372 - L1PA14 LINE L1 -1 6160 1890 7508 137 4 2 chr11 5772368 5773667 -145009886 + L1P LINE L1 2786 4086 -2060 664 80 44 0 chr11 5773663 5773725 -145009828 + L1PA2 LINE L1 5319 5377 -797 * 17200 30 1 0 chr11 5773725 5775139 -145008414 + L1PA2 LINE L1 3305 4716 -1439 2825 7 0 0 chr11 5775139 5775446 -145008107 + AluYb8 SINE Alu 1 307 -11 17200 30 1 0 chr11 5775446 5776893 -145006660 + L1PA2 LINE L1 4716 6155 0 664 80 44 0 chr11 5776893 5776943 -145006610 + L1PA2 LINE L1 5377 5436 -738 290 342 0 9 chr11 5777251 5777362 -145006191 - ERVL LTR ERVL -664 5100 4991 366 324 106 32 chr11 5778190 5778625 -145004928 - L2 LINE L2 -1277 2037 1571 407 311 52 46 chr11 5779312 5779640 -145003913 + L1M4 LINE L1 4028 4357 -1789 329 326 0 0 chr11 5780051 5780140 -145003413 - L2 LINE L2 -16 3297 3209 5879 223 37 23 chr11 5780196 5784281 -144999272 + L1PBa LINE L1 3 3194 -3668 270 208 75 50 chr11 5784323 5784443 -144999110 + L1MA9 LINE L1 6150 6272 -40 432 55 0 0 chr11 5784460 5784515 -144999038 + (CA)n Simple_repeat Simple_repeat 2 56 0 742 314 147 0 chr11 5784529 5784848 -144998705 - LTR33 LTR ERVL -153 368 3 21 0 0 0 chr11 5786396 5786417 -144997136 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 5786528 5786552 -144997001 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr11 5786673 5786706 -144996847 + AT_rich Low_complexity Low_complexity 1 33 0 2030 103 9 59 chr11 5786743 5787064 -144996489 + AluSc SINE Alu 1 305 -4 2048 138 13 3 chr11 5787151 5787449 -144996104 + AluJb SINE Alu 1 301 -11 742 89 45 0 chr11 5788823 5788935 -144994618 - L1PB1 LINE L1 -6 6145 6029 37 23 0 0 chr11 5789121 5789165 -144994388 + AT_rich Low_complexity Low_complexity 1 44 0 313 289 63 11 chr11 5789313 5789503 -144994050 + L1ME LINE L1 5556 5755 -366 4994 112 29 115 chr11 5789690 5789796 -144993757 + L1MA4 LINE L1 5211 5324 -976 2013 80 109 0 chr11 5789796 5790070 -144993483 + AluY SINE Alu 1 304 -7 4994 112 29 115 chr11 5790070 5790783 -144992770 + L1MA4 LINE L1 5324 5901 -399 1979 60 0 0 chr11 5790783 5791015 -144992538 + AluSx SINE Alu 1 232 -80 4994 112 29 115 chr11 5791015 5791384 -144992169 + L1MA4 LINE L1 5901 6300 0 207 0 0 0 chr11 5791542 5791565 -144991988 + (TA)n Simple_repeat Simple_repeat 1 23 0 31 44 0 0 chr11 5791724 5791769 -144991784 + AT_rich Low_complexity Low_complexity 1 45 0 184 205 0 0 chr11 5792144 5792183 -144991370 - L2 LINE L2 -981 2333 2295 1944 172 3 0 chr11 5792328 5792631 -144990922 - AluSx SINE Alu -8 304 1 360 292 77 0 chr11 5793912 5794107 -144989446 + L1ME LINE L1 5520 5729 -392 22 70 0 0 chr11 5794162 5794205 -144989348 + AT_rich Low_complexity Low_complexity 1 43 0 674 305 14 9 chr11 5794255 5794478 -144989075 - MIR SINE MIR -2 260 37 217 276 26 97 chr11 5794506 5794663 -144988890 + MIR SINE MIR 58 202 -60 180 294 119 55 chr11 5794802 5794911 -144988642 + L2 LINE L2 3175 3290 -23 228 285 106 80 chr11 5795428 5795579 -144987974 - MIR SINE MIR -71 191 37 243 88 0 0 chr11 5795645 5795679 -144987874 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1472 265 94 39 chr11 5796465 5797047 -144986506 + MLT1G LTR MaLR 17 590 0 1404 218 152 47 chr11 5797242 5797709 -144985844 - LTR41 LTR ERVL -1 772 257 868 301 118 36 chr11 5797765 5798266 -144985287 + L1M4 LINE L1 8 549 -5993 1041 185 50 37 chr11 5798273 5798571 -144984982 + L1M4 LINE L1 1029 1330 -5212 425 215 50 0 chr11 5798582 5798703 -144984850 + L1M4 LINE L1 1624 1750 -4896 1190 229 26 61 chr11 5798712 5799216 -144984337 + L1M4 LINE L1 1706 2375 -4271 353 232 61 0 chr11 5799217 5799299 -144984254 - MER2 DNA MER2_type 0 345 259 685 230 66 7 chr11 5799306 5799573 -144983980 + L1M4 LINE L1 2542 2823 -3821 1356 214 18 25 chr11 5799609 5799885 -144983668 + Tigger7 DNA MER2_type 1 274 -2213 406 224 0 47 chr11 5799885 5799970 -144983583 + Tigger7 DNA MER2_type 2395 2475 -12 753 171 30 6 chr11 5799976 5800312 -144983241 + L1M4 LINE L1 2828 3272 -3372 9190 216 18 31 chr11 5800315 5803286 -144980267 + L1P3 LINE L1 2 3083 -3378 4051 13 0 0 chr11 5803389 5803837 -144979716 + L1PA2 LINE L1 5698 6145 -10 711 295 85 9 chr11 5804922 5805146 -144978407 + MIR SINE MIR 9 249 -13 466 308 157 19 chr11 5805165 5805477 -144978076 + L1ME3 LINE L1 5008 5362 -784 742 288 76 24 chr11 5805562 5805932 -144977621 + L1ME3 LINE L1 5477 5865 -299 1696 191 5 43 chr11 5806423 5806794 -144976759 - MLT1A2 LTR MaLR -4 370 14 619 247 82 0 chr11 5808845 5809003 -144974550 + MIR SINE MIR 12 182 -80 305 259 62 0 chr11 5809196 5809277 -144974276 + L2 LINE L2 3147 3232 -40 1736 163 3 7 chr11 5809589 5809883 -144973670 - AluJo SINE Alu -19 293 1 261 324 0 0 chr11 5810155 5810229 -144973324 - L2 LINE L2 -11 3302 3229 250 164 177 27 chr11 5811140 5811253 -144972300 - MIR3 SINE MIR -21 187 59 454 94 47 0 chr11 5814246 5814310 -144969243 + AluJ/FRAM SINE Alu 221 287 -25 312 287 58 0 chr11 5814316 5814403 -144969150 + L1ME LINE L1 5628 5719 -402 1064 224 89 20 chr11 5814773 5815076 -144968477 + MER46C DNA MER2_type 2 325 -13 357 213 0 0 chr11 5815628 5815703 -144967850 - L1PB4 LINE L1 0 6156 6082 212 247 136 25 chr11 5817886 5817967 -144965586 + L2 LINE L2 2969 3058 -214 290 244 0 24 chr11 5818060 5818142 -144965411 + MIR SINE MIR 183 262 0 203 133 0 0 chr11 5818558 5818588 -144964965 + (TG)n Simple_repeat Simple_repeat 2 31 0 2064 126 35 20 chr11 5818728 5819070 -144964483 + MER7A DNA MER2_type 1 345 -1 869 180 22 28 chr11 5819101 5819279 -144964274 - MER5B DNA MER1_type 0 178 2 479 237 93 61 chr11 5819991 5820211 -144963342 - MIR SINE MIR 0 262 38 356 184 0 26 chr11 5820694 5820770 -144962783 + L1PB4 LINE L1 6083 6156 0 673 152 159 14 chr11 5821241 5821379 -144962174 - MER4D LTR ERV1 -389 514 357 21 0 0 0 chr11 5821381 5821402 -144962151 + AT_rich Low_complexity Low_complexity 1 21 0 2242 84 3 0 chr11 5821404 5821701 -144961852 - AluSg SINE Alu -12 298 1 903 199 26 5 chr11 5821701 5821892 -144961661 - MER4B LTR ERV1 -415 195 1 1057 349 64 25 chr11 5822103 5822891 -144960662 - ERVL LTR ERVL -418 5346 4484 2268 91 13 0 chr11 5823330 5823639 -144959914 + AluSp SINE Alu 1 313 0 487 271 97 13 chr11 5823882 5824037 -144959516 + MIR SINE MIR 32 199 -63 184 294 87 22 chr11 5824428 5824520 -144959033 - L2 LINE L2 -32 3240 3143 881 64 0 0 chr11 5825077 5825186 -144958367 - AluSp SINE Alu -204 109 1 2711 165 64 11 chr11 5825186 5825811 -144957742 - L1 LINE L1 -2691 3455 2798 442 298 88 18 chr11 5826009 5826180 -144957373 - MIR SINE MIR -27 235 53 358 378 82 0 chr11 5826195 5826391 -144957162 + MIR SINE MIR 2 213 -49 787 181 11 80 chr11 5827143 5827331 -144956222 + MER69A DNA AcHobo 2 176 -1 338 208 0 52 chr11 5827397 5827474 -144956079 + MIR SINE MIR 74 146 -62 323 325 138 8 chr11 5830863 5831109 -144952444 + L2 LINE L2 1727 2004 -1310 769 154 147 13 chr11 5831467 5831623 -144951930 - MER4D LTR ERV1 -370 533 357 21 0 0 0 chr11 5831625 5831646 -144951907 + AT_rich Low_complexity Low_complexity 1 21 0 2270 81 3 0 chr11 5831648 5831945 -144951608 - AluSg SINE Alu -12 298 1 951 189 26 5 chr11 5831945 5832136 -144951417 - MER4B LTR ERV1 -415 195 1 1057 349 64 25 chr11 5832347 5833135 -144950418 - ERVL LTR ERVL -418 5346 4484 2268 91 13 0 chr11 5833574 5833883 -144949670 + AluSp SINE Alu 1 313 0 487 271 97 13 chr11 5834126 5834281 -144949272 + MIR SINE MIR 32 199 -63 184 294 87 22 chr11 5834672 5834764 -144948789 - L2 LINE L2 -32 3240 3143 710 358 47 42 chr11 5835335 5835627 -144947926 + L2 LINE L2 909 1198 -2116 2472 61 0 0 chr11 5835627 5835938 -144947615 + AluY SINE Alu 1 311 0 710 358 47 42 chr11 5835938 5836240 -144947313 + L2 LINE L2 1198 1506 -1808 478 202 11 21 chr11 5836234 5836328 -144947225 - MIR SINE MIR -107 155 63 * 2243 102 3 0 chr11 5836434 5836738 -144946815 - AluSx SINE Alu -7 305 1 1418 267 114 9 chr11 5836745 5837202 -144946351 - MLT1J LTR MaLR -6 505 1 499 279 162 36 chr11 5837295 5837603 -144945950 + L2 LINE L2 1700 2046 -1268 3035 104 4 40 chr11 5837608 5837865 -144945688 + MER57B LTR ERV1 1 237 -197 2292 62 0 3 chr11 5837865 5838154 -144945399 - AluY SINE Alu -9 302 15 3035 104 4 40 chr11 5838154 5838346 -144945207 + MER57B LTR ERV1 237 434 0 414 293 81 11 chr11 5838375 5838549 -144945004 - L1M4 LINE L1 -921 5225 5040 1834 172 0 6 chr11 5838557 5838871 -144944682 - AluSx SINE Alu 0 312 1 2172 90 3 3 chr11 5839104 5839403 -144944150 - AluSp SINE Alu -14 299 1 1747 152 0 34 chr11 5839414 5839737 -144943816 - AluJb SINE Alu 0 312 1 652 285 36 105 chr11 5839937 5840103 -144943450 + L2 LINE L2 2325 2501 -813 833 168 0 0 chr11 5840103 5840234 -144943319 - FLAM_A SINE Alu -2 131 1 652 285 36 105 chr11 5840234 5840513 -144943040 + L2 LINE L2 2501 2739 -575 * 1097 217 134 97 chr11 5840512 5840774 -144942779 - L2 LINE L2 0 3313 3062 2057 110 0 3 chr11 5840774 5841065 -144942488 + AluSg1 SINE Alu 1 290 -19 1097 217 134 97 chr11 5841065 5841318 -144942235 - L2 LINE L2 -251 3062 2780 415 256 105 47 chr11 5841405 5841596 -144941957 + L2 LINE L2 2888 3089 -224 693 225 41 6 chr11 5841603 5841772 -144941781 - LTR33A LTR ERVL -10 513 339 2660 86 106 5 chr11 5841774 5842181 -144941372 - LTR7 LTR ERV1 -2 448 1 2440 81 65 14 chr11 5842181 5842552 -144941001 - HERVH LTR ERV1 0 7713 7324 1517 127 0 0 chr11 5842552 5842772 -144940781 - HERVH LTR ERV1 -1894 5819 5600 3014 132 5 2 chr11 5842773 5843384 -144940169 - HERVH LTR ERV1 -2564 5149 4489 * 5713 105 19 5 chr11 5843379 5844228 -144939325 - HERVH LTR ERV1 -3713 4000 3140 * 15035 110 10 22 chr11 5844207 5846989 -144936564 - HERVH LTR ERV1 -4718 2995 1 2777 72 99 5 chr11 5846999 5847402 -144936151 - LTR7 LTR ERV1 -9 441 1 276 256 171 82 chr11 5847425 5847694 -144935859 - LTR33A LTR ERVL -218 305 13 221 208 14 0 chr11 5847756 5847828 -144935725 + (CTATT)n Simple_repeat Simple_repeat 1 73 0 488 267 128 26 chr11 5847828 5848023 -144935530 + L2 LINE L2 3099 3313 0 277 310 28 0 chr11 5848042 5848113 -144935440 + L2 LINE L2 3199 3271 -42 1242 217 137 35 chr11 5848121 5848545 -144935008 - MLT1C LTR MaLR 0 467 1 277 273 75 127 chr11 5848580 5849017 -144934536 + L2 LINE L2 2628 3052 -220 568 167 80 60 chr11 5851136 5851258 -144932295 - MER5C DNA MER1_type 0 324 197 2267 103 0 0 chr11 5851258 5851569 -144931984 + AluSq SINE Alu 1 311 -2 568 167 80 60 chr11 5851569 5851596 -144931957 - MER5C DNA MER1_type -127 197 172 1591 153 11 0 chr11 5851604 5851866 -144931687 - L1MD3 LINE L1 -5 7990 7726 747 206 39 7 chr11 5851868 5852023 -144931530 - MER5C DNA MER1_type -164 160 1 267 31 0 0 chr11 5852340 5852372 -144931181 + (T)n Simple_repeat Simple_repeat 1 32 0 616 191 0 9 chr11 5852372 5852482 -144931071 - MER50-int LTR ERV1 -7093 112 4 1494 123 0 60 chr11 5852484 5852575 -144930978 - MER50 LTR ERV1 0 734 639 2234 116 0 0 chr11 5852575 5852886 -144930667 + AluSp SINE Alu 1 311 -2 1494 123 0 60 chr11 5852886 5853045 -144930508 - MER50 LTR ERV1 -95 639 499 241 267 84 30 chr11 5853313 5853444 -144930109 + MIR SINE MIR 105 242 -20 412 333 33 0 chr11 5853739 5853859 -144929694 + L2 LINE L2 3147 3270 -2 344 309 112 81 chr11 5853954 5854045 -144929508 + L1M4 LINE L1 4800 4887 -1259 1389 161 50 47 chr11 5854045 5854343 -144929210 + AluJo SINE Alu 1 299 -13 344 309 112 81 chr11 5854343 5854362 -144929191 + L1M4 LINE L1 4887 4904 -1242 2148 102 0 3 chr11 5854362 5854655 -144928898 - AluSq SINE Alu -21 292 1 344 309 112 81 chr11 5854655 5854963 -144928590 + L1M4 LINE L1 4904 5232 -914 250 325 100 0 chr11 5856476 5856556 -144926997 + L2 LINE L2 3226 3313 0 2067 114 0 25 chr11 5857000 5857315 -144926238 - AluSx SINE Alu -5 307 1 324 77 46 0 chr11 5857408 5857473 -144926080 + (TA)n Simple_repeat Simple_repeat 1 68 0 1919 96 0 4 chr11 5857473 5857733 -144925820 - AluSg1 SINE Alu -19 290 32 283 320 13 0 chr11 5857736 5857811 -144925742 + L2 LINE L2 3225 3300 -13 322 38 19 19 chr11 5857816 5857869 -144925684 + (TGAA)n Simple_repeat Simple_repeat 2 54 0 26 30 0 0 chr11 5860008 5860041 -144923512 + AT_rich Low_complexity Low_complexity 1 33 0 230 362 127 32 chr11 5860322 5860692 -144922861 - L2 LINE L2 -443 2871 2467 486 245 29 36 chr11 5860721 5860860 -144922693 - MIR SINE MIR -49 213 76 360 311 0 66 chr11 5861238 5861389 -144922164 + L2 LINE L2 2933 3073 -199 232 167 0 69 chr11 5861578 5861650 -144921903 + L1ME LINE L1 5759 5818 -303 326 260 39 0 chr11 5861689 5861766 -144921787 + ERVL LTR ERVL 3654 3733 -2031 672 215 45 40 chr11 5861965 5862142 -144921411 - AluJo SINE Alu -16 296 119 810 354 13 10 chr11 5862364 5862760 -144920793 + ERVL LTR ERVL 4063 4459 -1195 1108 228 154 23 chr11 5862782 5863211 -144920342 - MLT1H LTR MaLR 0 555 35 1648 85 0 13 chr11 5863229 5863464 -144920089 - AluY SINE Alu -14 297 66 1001 83 0 0 chr11 5863464 5863596 -144919957 - AluY SINE Alu -179 132 1 1637 223 72 31 chr11 5863714 5864158 -144919395 + MLT1C LTR MaLR 6 467 0 205 26 26 51 chr11 5864455 5864494 -144919059 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 2368 137 49 91 chr11 5864645 5864981 -144918572 - L1MA8 LINE L1 -4 6287 5981 2586 36 0 0 chr11 5864981 5865289 -144918264 - AluY SINE Alu -3 308 1 2368 137 49 91 chr11 5865289 5865501 -144918052 - L1MA8 LINE L1 -310 5981 5762 2060 109 20 0 chr11 5866227 5866521 -144917032 - AluSx SINE Alu -10 302 3 1756 174 119 31 chr11 5866857 5867276 -144916277 - LTR2B LTR ERV1 -3 487 32 225 196 0 0 chr11 5867890 5867941 -144915612 + GA-rich Low_complexity Low_complexity 1 51 0 311 185 370 0 chr11 5868535 5868616 -144914937 - MER81 DNA DNA -3 111 1 2340 63 3 0 chr11 5868916 5869215 -144914338 - AluY SINE Alu -11 300 1 380 172 46 0 chr11 5869435 5869522 -144914031 - L1MC5 LINE L1 -66 7895 7805 2154 100 10 0 chr11 5869687 5869986 -144913567 - AluSx SINE Alu -10 302 1 2304 95 0 0 chr11 5870271 5870575 -144912978 + AluSq SINE Alu 1 304 -9 965 158 6 6 chr11 5871065 5871236 -144912317 - MER39 LTR ERV1 0 707 537 204 40 0 0 chr11 5871237 5871262 -144912291 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 835 177 20 0 chr11 5871264 5871411 -144912142 - FRAM SINE Alu -30 146 1 2110 133 76 129 chr11 5871412 5871654 -144911899 - MER39B LTR ERV1 -154 499 246 1807 164 0 16 chr11 5871654 5871971 -144911582 - AluJo SINE Alu 0 312 1 2110 133 76 129 chr11 5871971 5872103 -144911450 - MER39B LTR ERV1 -407 246 109 2077 116 10 0 chr11 5872103 5872406 -144911147 - AluSx SINE Alu -6 306 1 2110 133 76 129 chr11 5872406 5872430 -144911123 - MER39B LTR ERV1 -544 109 85 2213 92 3 13 chr11 5872430 5872744 -144910809 - AluSx SINE Alu -1 311 1 2110 133 76 129 chr11 5872744 5872870 -144910683 - MER39B LTR ERV1 -568 85 1 825 127 0 0 chr11 5873060 5873178 -144910375 + FLAM_C SINE Alu 7 124 -19 227 161 18 0 chr11 5873178 5873234 -144910319 + (TA)n Simple_repeat Simple_repeat 1 57 0 1865 173 31 45 chr11 5873455 5874081 -144909472 + LTR8 LTR ERV1 1 691 0 316 331 25 32 chr11 5875385 5875542 -144908011 + ERVL LTR ERVL 5140 5295 -469 2209 98 3 0 chr11 5875548 5875845 -144907708 + AluSx SINE Alu 1 298 -14 1252 190 66 22 chr11 5875895 5876169 -144907384 + AluJb SINE Alu 15 300 -12 657 25 0 0 chr11 5876268 5876347 -144907206 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 2629 86 13 5 chr11 5876774 5877148 -144906405 + L1PA13 LINE L1 5785 6161 -2 911 151 6 38 chr11 5877469 5877628 -144905925 + MER3 DNA MER1_type 56 209 0 1886 146 3 0 chr11 5877904 5878192 -144905361 + AluJb SINE Alu 1 289 -23 267 79 0 0 chr11 5878192 5878230 -144905323 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 233 234 0 96 chr11 5878593 5878687 -144904866 - MIR SINE MIR -130 132 48 25 0 0 0 chr11 5878792 5878817 -144904736 + AT_rich Low_complexity Low_complexity 1 25 0 624 198 87 12 chr11 5879293 5879465 -144904088 - MER53 DNA DNA 0 189 5 200 254 18 18 chr11 5879640 5879695 -144903858 + MIR SINE MIR 95 149 -113 214 296 28 56 chr11 5879708 5879816 -144903737 + MIR SINE MIR 48 152 -110 765 242 43 0 chr11 5879954 5880140 -144903413 + MIR SINE MIR 35 228 -34 180 125 0 0 chr11 5880215 5880247 -144903306 + (T)n Simple_repeat Simple_repeat 1 32 0 423 141 28 0 chr11 5880285 5880356 -144903197 - AluJ/FRAM SINE Alu -16 296 224 2983 222 15 15 chr11 5880536 5881188 -144902365 + MER82 DNA MER2_type 2 653 0 2118 125 3 0 chr11 5881487 5881798 -144901755 - AluSx SINE Alu 0 312 1 1281 157 126 28 chr11 5882013 5882090 -144901463 + Charlie5 DNA MER1_type 2234 2302 -322 2841 133 9 0 chr11 5882090 5882520 -144901033 + MER57B LTR ERV1 1 434 0 1281 157 126 28 chr11 5882520 5882798 -144900755 + Charlie5 DNA MER1_type 2302 2624 0 210 143 0 0 chr11 5883262 5883297 -144900256 + (TTTTC)n Simple_repeat Simple_repeat 5 39 0 197 143 48 0 chr11 5883325 5883367 -144900186 + CT-rich Low_complexity Low_complexity 3 46 0 1350 251 92 14 chr11 5885051 5885473 -144898080 - MLT1C LTR MaLR 0 467 13 1156 219 109 27 chr11 5885473 5885839 -144897714 + MSTD LTR MaLR 1 396 0 253 333 9 9 chr11 5886437 5886545 -144897008 - ERVL LTR ERVL -2405 3359 3252 1644 177 100 84 chr11 5887566 5887634 -144895919 - MLT1C LTR MaLR -2 465 400 1936 130 0 17 chr11 5887634 5887926 -144895627 + AluSq SINE Alu 2 288 -25 1644 177 100 84 chr11 5887926 5888308 -144895245 - MLT1C LTR MaLR -67 400 8 2129 114 3 0 chr11 5888390 5888687 -144894866 - AluSp SINE Alu -15 298 1 1361 210 105 18 chr11 5888736 5889069 -144894484 + MER93b LTR ERV1 12 373 0 2028 177 36 120 chr11 5889385 5890053 -144893500 + LTR9 LTR ERV1 1 612 0 2215 95 0 0 chr11 5890083 5890378 -144893175 + AluSg SINE Alu 2 296 -14 2033 119 0 3 chr11 5891473 5891783 -144891770 - AluSx SINE Alu -3 309 1 195 69 0 0 chr11 5894530 5894559 -144888994 + (TTG)n Simple_repeat Simple_repeat 3 31 0 307 154 39 0 chr11 5894844 5894896 -144888657 - L2 LINE L2 -5 3308 3255 513 309 24 63 chr11 5895138 5895390 -144888163 + L2 LINE L2 2716 2957 -357 273 300 70 20 chr11 5895457 5895557 -144887996 + L2 LINE L2 3183 3287 -26 1775 186 0 0 chr11 5895611 5895922 -144887631 + AluJb SINE Alu 1 311 -1 192 333 42 0 chr11 5895986 5896058 -144887495 - L2 LINE L2 -6 3266 3192 346 277 84 0 chr11 5896268 5896387 -144887166 + MIR SINE MIR 119 247 -15 337 218 40 198 chr11 5896410 5896482 -144887071 - L2 LINE L2 -1 3312 3230 1657 167 30 10 chr11 5896482 5896782 -144886771 + AluSx SINE Alu 2 307 -5 337 218 40 198 chr11 5896782 5897012 -144886541 - L2 LINE L2 -83 3230 3058 1743 185 7 17 chr11 5897858 5898160 -144885393 + AluJo SINE Alu 1 299 -13 1030 193 117 58 chr11 5899711 5899830 -144883723 + MLT1A1 LTR MaLR 1 112 -253 2452 120 30 79 chr11 5899830 5900118 -144883435 - MER65A LTR ERV1 0 445 187 2366 73 7 0 chr11 5900118 5900404 -144883149 - AluSp SINE Alu -25 288 1 2452 120 30 79 chr11 5900404 5900583 -144882970 - MER65A LTR ERV1 -258 187 1 1030 193 117 58 chr11 5900583 5900805 -144882748 + MLT1A1 LTR MaLR 112 362 -3 2022 141 17 7 chr11 5901079 5901376 -144882177 - AluSx SINE Alu -12 300 1 21 0 0 0 chr11 5902432 5902453 -144881100 + AT_rich Low_complexity Low_complexity 1 21 0 4312 92 17 73 chr11 5902715 5903477 -144880076 + L1PB1 LINE L1 5433 6151 0 2198 103 3 20 chr11 5904060 5904361 -144879192 + AluSq SINE Alu 9 304 -9 436 221 176 33 chr11 5904492 5904799 -144878754 + L1ME4a LINE L1 5767 6117 -4 246 81 0 0 chr11 5905089 5905126 -144878427 + (GA)n Simple_repeat Simple_repeat 2 38 0 238 282 0 13 chr11 5905926 5906004 -144877549 + L2 LINE L2 3144 3220 -93 32 0 0 0 chr11 5907254 5907286 -144876267 + AT_rich Low_complexity Low_complexity 1 32 0 1838 191 30 22 chr11 5907297 5907659 -144875894 - MLT1A1 LTR MaLR 0 365 1 40417 38 26 2 chr11 5908030 5913282 -144870271 - L1P LINE L1 -764 5382 5 31 76 0 0 chr11 5913413 5913479 -144870074 + AT_rich Low_complexity Low_complexity 1 66 0 186 255 78 0 chr11 5913491 5913542 -144870011 - L2 LINE L2 -1 3312 3258 1777 191 55 0 chr11 5913610 5913940 -144869613 - MER7A DNA MER2_type 0 346 1 2613 187 64 40 chr11 5913960 5914359 -144869194 - L1MD1 LINE L1 -9 6627 6239 2232 101 7 3 chr11 5914359 5914657 -144868896 - AluSq SINE Alu -14 299 1 2613 187 64 40 chr11 5914657 5914890 -144868663 - L1MD1 LINE L1 -397 6239 5974 1873 160 54 11 chr11 5914890 5915240 -144868313 + MLT1A1 LTR MaLR 1 365 0 2613 187 64 40 chr11 5915240 5915289 -144868264 - L1MD1 LINE L1 -662 5974 5928 * 3651 233 83 14 chr11 5915288 5916619 -144866934 - L1MD1 LINE L1 -1962 4578 3157 7449 36 0 1 chr11 5916672 5918193 -144865360 - L1PA5 LINE L1 -4 6150 4632 9024 88 19 1 chr11 5918193 5919481 -144864072 - L1P LINE L1 -4825 1321 11 1020 217 38 9 chr11 5919537 5920079 -144863474 - L1MD1 LINE L1 -3597 2943 2391 1805 141 7 10 chr11 5920079 5920383 -144863170 - MER1B DNA MER1_type 0 339 37 547 265 196 3 chr11 5920387 5920693 -144862860 - L1MD1 LINE L1 -4142 2398 2034 1422 219 39 8 chr11 5920701 5921134 -144862419 - L1ME2 LINE L1 -76 6086 5628 3843 173 18 31 chr11 5921281 5922098 -144861455 - L1MB3 LINE L1 -2 6181 5375 665 242 0 18 chr11 5922312 5922477 -144861076 + MIR SINE MIR 101 262 0 236 265 0 0 chr11 5923393 5923442 -144860111 - L2 LINE L2 -14 3258 3210 234 167 0 0 chr11 5923525 5923585 -144859968 + T-rich Low_complexity Low_complexity 1 60 0 1564 147 38 12 chr11 5923809 5924128 -144859425 + L1MA8 LINE L1 5961 6287 -4 186 43 0 0 chr11 5925326 5925349 -144858204 + (ATG)n Simple_repeat Simple_repeat 2 24 0 197 260 91 0 chr11 5925369 5925446 -144858107 - MIR SINE MIR -42 220 137 198 0 0 0 chr11 5925446 5925468 -144858085 + (T)n Simple_repeat Simple_repeat 1 22 0 40 0 0 0 chr11 5925478 5925518 -144858035 + AT_rich Low_complexity Low_complexity 1 40 0 749 169 0 0 chr11 5925518 5925672 -144857881 - L1HS LINE L1 -2 6153 6000 30 27 0 0 chr11 5926660 5926697 -144856856 + AT_rich Low_complexity Low_complexity 1 37 0 2268 118 0 0 chr11 5927682 5927986 -144855567 + AluSx SINE Alu 1 304 -8 2291 90 3 6 chr11 5929985 5930296 -144853257 - AluSx SINE Alu -2 310 1 1489 195 84 15 chr11 5931109 5931503 -144852050 - LTR37A LTR ERV1 -2 424 4 742 223 48 65 chr11 5931503 5931795 -144851758 - MER31-int LTR ERV1 -677 4259 3973 713 151 0 0 chr11 5931814 5931920 -144851633 - AluSq/x SINE Alu -207 106 1 573 230 24 24 chr11 5931920 5932085 -144851468 - MER31-int LTR ERV1 -955 3981 3817 466 88 38 0 chr11 5932746 5932826 -144850727 + GA-rich Low_complexity Low_complexity 2 84 0 379 152 152 0 chr11 5934479 5934591 -144848962 - LTR37A LTR ERV1 -285 141 13 225 132 0 0 chr11 5934946 5934984 -144848569 + (CAAAG)n Simple_repeat Simple_repeat 2 39 0 2574 30 0 0 chr11 5935170 5935467 -144848086 + AluY SINE Alu 1 297 -14 2242 125 0 10 chr11 5935825 5936138 -144847415 + AluSx SINE Alu 1 310 -2 223 244 0 0 chr11 5936823 5936868 -144846685 + C-rich Low_complexity Low_complexity 2 46 0 1592 194 115 3 chr11 5937177 5937533 -144846020 - MSTD LTR MaLR 0 396 1 2102 137 3 0 chr11 5937771 5938063 -144845490 - AluSx SINE Alu -1 311 19 2093 118 3 7 chr11 5938556 5938852 -144844701 - AluSc SINE Alu -14 295 1 388 246 205 0 chr11 5939131 5939253 -144844300 - MER5A DNA MER1_type 0 189 43 428 184 10 0 chr11 5940138 5940241 -144843312 + (TA)n Simple_repeat Simple_repeat 1 104 0 539 301 114 0 chr11 5940343 5940519 -144843034 - MIR SINE MIR -36 226 31 246 288 157 60 chr11 5940661 5940980 -144842573 - L2 LINE L2 -46 3267 2918 587 124 0 10 chr11 5940980 5941077 -144842476 + MER4A LTR ERV1 2 97 -567 310 297 0 0 chr11 5941989 5942068 -144841485 + MER5A DNA MER1_type 29 107 -71 395 272 64 0 chr11 5942088 5942213 -144841340 - L1MEc LINE L1 -4901 1495 1363 4267 75 0 4 chr11 5942215 5942771 -144840782 - MER41A LTR ERV1 0 554 1 11623 100 24 28 chr11 5942773 5945724 -144837829 - MER41A-int LTR ERV1 -4 5942 1360 306 0 0 0 chr11 5945724 5945758 -144837795 + (CA)n Simple_repeat Simple_repeat 1 34 0 4618 124 74 9 chr11 5945761 5946805 -144836748 - MER41A-int LTR ERV1 -4852 1481 1 3560 84 67 8 chr11 5946805 5947328 -144836225 - MER41A LTR ERV1 0 554 1 575 241 112 42 chr11 5947349 5947602 -144835951 - MLT1E LTR MaLR -248 319 54 339 265 47 71 chr11 5947752 5947922 -144835631 - L1MEc LINE L1 -5952 253 88 412 283 8 17 chr11 5947964 5948084 -144835469 - L2 LINE L2 -609 2705 2587 2447 77 6 6 chr11 5948414 5948727 -144834826 + AluSq SINE Alu 1 313 0 189 0 0 0 chr11 5949458 5949479 -144834074 + (T)n Simple_repeat Simple_repeat 1 21 0 189 94 0 0 chr11 5949494 5949526 -144834027 + (T)n Simple_repeat Simple_repeat 1 32 0 1320 6 0 0 chr11 5949528 5949684 -144833869 - L1HS LINE L1 0 6155 6000 504 239 35 0 chr11 5949687 5949800 -144833753 - MIR SINE MIR -114 148 32 337 293 93 7 chr11 5950444 5950584 -144832969 - L1MC4 LINE L1 -1278 6764 6613 1813 143 3 18 chr11 5950589 5950875 -144832678 - AluJo SINE Alu -30 282 1 210 330 0 11 chr11 5953354 5953442 -144830111 + CT-rich Low_complexity Low_complexity 3 89 0 21 0 0 0 chr11 5953594 5953615 -144829938 + AT_rich Low_complexity Low_complexity 1 21 0 307 291 45 18 chr11 5953899 5954009 -144829544 + L2 LINE L2 3168 3280 -33 281 377 15 0 chr11 5954387 5954517 -144829036 + L2 LINE L2 2188 2319 -995 439 343 32 32 chr11 5954687 5954903 -144828650 + MIR SINE MIR 19 234 -28 24 0 0 0 chr11 5955577 5955601 -144827952 + AT_rich Low_complexity Low_complexity 1 24 0 14205 155 37 18 chr11 5955601 5955646 -144827907 - L1MA2 LINE L1 -109 7614 7571 1965 147 7 3 chr11 5955646 5955946 -144827607 - AluSx SINE Alu -11 301 1 14205 155 37 18 chr11 5955946 5960092 -144823461 - L1MA2 LINE L1 -152 7571 3322 2151 116 0 3 chr11 5960092 5960412 -144823141 + AluSx SINE Alu 1 319 0 14205 155 37 18 chr11 5960412 5960644 -144822909 - L1MA2 LINE L1 -4401 3322 3096 501 163 10 10 chr11 5960646 5960744 -144822809 + MER4A LTR ERV1 1 98 -566 1612 160 36 14 chr11 5960744 5961081 -144822472 + MER4A LTR ERV1 261 663 -1 1258 128 68 16 chr11 5961090 5961339 -144822214 - L1MA2 LINE L1 -4476 3089 2828 4193 70 3 26 chr11 5961339 5961906 -144821647 + MER41A LTR ERV1 1 554 0 277 104 338 13 chr11 5961990 5962067 -144821486 + MER41A-int LTR ERV1 1 102 -5844 4754 136 53 30 chr11 5962076 5963283 -144820270 + MER41A-int LTR ERV1 1 1319 -4627 1932 175 59 10 chr11 5963282 5963670 -144819883 + MER41A-int LTR ERV1 1965 2371 -5166 * 714 111 133 7 chr11 5963669 5963804 -144819749 + MER57-int LTR ERV1 1866 2017 -3929 * 648 146 43 107 chr11 5963800 5963916 -144819637 + MER57-int LTR ERV1 1740 1862 -5319 * 2171 115 0 13 chr11 5963916 5964220 -144819333 + AluSx SINE Alu 1 300 -12 648 146 43 107 chr11 5964220 5964299 -144819254 + MER57-int LTR ERV1 1862 3490 -3691 9354 161 117 17 chr11 5964328 5966110 -144817443 - L1MA2 LINE L1 -5593 1972 13 615 290 60 10 chr11 5966110 5966310 -144817243 - MIR SINE MIR -3 259 50 281 317 110 0 chr11 5966412 5966494 -144817059 + L2 LINE L2 3146 3236 -36 38 66 0 28 chr11 5967336 5967442 -144816111 + AT_rich Low_complexity Low_complexity 1 103 0 808 194 37 42 chr11 5967474 5967690 -144815863 + MER96B DNA MER1_type? 202 416 -1 2050 129 4 0 chr11 5967944 5968270 -144815283 + AluSx SINE Alu 3 329 0 259 319 48 18 chr11 5968381 5968547 -144815006 - L1ME LINE L1 -421 5700 5530 247 254 54 23 chr11 5968589 5968719 -144814834 - L1M3 LINE L1 -724 5447 5314 330 312 25 33 chr11 5968957 5969204 -144814349 - L1M3 LINE L1 -1107 5039 4793 232 313 167 30 chr11 5969210 5969408 -144814145 - MIR SINE MIR -3 259 35 280 335 68 58 chr11 5969610 5969903 -144813650 - L2 LINE L2 -484 2830 2535 429 328 83 23 chr11 5971118 5971363 -144812190 + MIR SINE MIR 8 262 0 1897 152 0 30 chr11 5971591 5971888 -144811665 + AluSx SINE Alu 11 298 -14 2276 119 3 0 chr11 5972001 5972311 -144811242 + AluSx SINE Alu 1 311 -1 544 269 7 13 chr11 5972547 5972696 -144810857 + L2 LINE L2 2200 2347 -967 291 306 162 20 chr11 5972742 5973039 -144810514 - MLT1J2 LTR MaLR -45 405 67 40466 35 24 1 chr11 5973196 5978993 -144804560 - L1PA3 LINE L1 -213 5942 13 371 273 87 17 chr11 5979427 5979635 -144803918 + MLT1I LTR MaLR 93 327 -123 1885 160 10 3 chr11 5980404 5980697 -144802856 + AluSx SINE Alu 1 295 -17 241 341 99 0 chr11 5981470 5981561 -144801992 + L2 LINE L2 3122 3221 -51 21 0 0 0 chr11 5981785 5981806 -144801747 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 5981895 5981919 -144801634 + AT_rich Low_complexity Low_complexity 1 24 0 385 254 64 0 chr11 5981925 5982035 -144801518 - L1M4 LINE L1 -2924 4641 4525 1191 235 76 13 chr11 5982059 5982589 -144800964 - L1M4 LINE L1 -3414 4151 3530 1102 132 0 0 chr11 5982589 5982748 -144800805 - AluSx SINE Alu -1 311 153 751 139 0 0 chr11 5982748 5982856 -144800697 - AluSx SINE Alu -204 108 1 24 0 0 0 chr11 5983140 5983164 -144800389 + AT_rich Low_complexity Low_complexity 1 24 0 1523 100 56 0 chr11 5983174 5983405 -144800148 - L1PA16 LINE L1 -8 6158 5915 1694 136 12 37 chr11 5983407 5983731 -144799822 - L1 LINE L1 -2307 3839 3524 * 7458 161 31 27 chr11 5983729 5985271 -144798282 - L1M4 LINE L1 -4662 2905 1358 2051 197 15 6 chr11 5985272 5986049 -144797504 - L1M2 LINE L1 -652 5660 4877 2583 66 0 41 chr11 5986152 5986516 -144797037 - L1PA6 LINE L1 -1 6153 5805 393 261 82 31 chr11 5986553 5986885 -144796668 + MER57-int LTR ERV1 2455 4202 -2129 4396 229 52 62 chr11 5986888 5988378 -144795175 + MER57-int LTR ERV1 2493 3965 -906 1648 214 0 14 chr11 5988378 5988673 -144794880 - AluJo SINE Alu -21 291 1 4396 229 52 62 chr11 5988673 5988881 -144794672 + MER57-int LTR ERV1 3965 4174 -697 1720 239 68 42 chr11 5988974 5989239 -144794314 + MER57-int LTR ERV1 6614 6871 -666 2327 138 23 0 chr11 5989239 5989593 -144793960 - THE1B LTR MaLR -2 362 1 1720 239 68 42 chr11 5989593 5989845 -144793708 + MER57-int LTR ERV1 6871 7144 -393 1247 151 13 6 chr11 5989846 5990268 -144793285 + LTR54 LTR ERV1 2 510 0 285 300 22 0 chr11 5990414 5990504 -144793049 + L2 LINE L2 1614 1705 -1609 879 71 58 0 chr11 5990692 5990847 -144792706 + CT-rich Low_complexity Low_complexity 2 165 0 1986 91 14 11 chr11 5990847 5991122 -144792431 - AluSq SINE Alu -36 277 2 1958 138 3 3 chr11 5991206 5991530 -144792023 - AluSx SINE Alu 0 312 1 2273 108 10 0 chr11 5992078 5992385 -144791168 - AluSx SINE Alu -2 310 1 799 238 72 25 chr11 5992712 5992944 -144790609 + MIR SINE MIR 2 231 -31 245 257 29 29 chr11 5992989 5993059 -144790494 - MIR SINE MIR -127 81 12 246 303 67 6 chr11 5994997 5995175 -144788378 - HAL1b LINE L1 -727 621 433 26 30 0 0 chr11 5996105 5996138 -144787415 + AT_rich Low_complexity Low_complexity 1 33 0 274 284 9 17 chr11 5996248 5996364 -144787189 - L1M4 LINE L1 -1541 4605 4491 2250 116 3 0 chr11 5996456 5996759 -144786794 - AluSx SINE Alu -8 304 1 774 192 12 12 chr11 5996887 5997059 -144786494 + AluSq SINE Alu 142 313 0 181 260 31 94 chr11 5997383 5997479 -144786074 - L3b LINE CR1 -113 1470 1381 207 0 0 0 chr11 5997517 5997540 -144786013 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1782 164 0 0 chr11 5997551 5997813 -144785740 - AluSx SINE Alu -50 262 1 472 310 39 0 chr11 5997814 5997969 -144785584 + L2 LINE L2 2841 3001 -312 3641 48 119 8 chr11 5998021 5998523 -144785030 - LTR6B LTR ERV1 0 558 1 32 0 0 0 chr11 5998963 5998995 -144784558 + AT_rich Low_complexity Low_complexity 1 32 0 1897 128 0 0 chr11 5998995 5999277 -144784276 - AluSx SINE Alu -26 286 5 426 276 46 33 chr11 5999338 5999490 -144784063 + MIR SINE MIR 66 219 -43 1910 131 0 0 chr11 5999519 5999801 -144783752 + AluSx SINE Alu 20 301 -11 305 243 27 14 chr11 6000632 6000706 -144782847 + MIR SINE MIR 2 76 -186 12386 141 42 28 chr11 6000718 6001321 -144782232 - L1MA3 LINE L1 0 6305 5712 2318 84 7 0 chr11 6001321 6001631 -144781922 - AluSx SINE Alu 0 312 1 12386 141 42 28 chr11 6001631 6003865 -144779688 - L1MA3 LINE L1 -593 5712 3413 2308 102 0 0 chr11 6003865 6004178 -144779375 - AluSp SINE Alu 0 313 1 12386 141 42 28 chr11 6004178 6004803 -144778750 - L1MA3 LINE L1 -2892 3413 2798 442 298 88 18 chr11 6005001 6005172 -144778381 - MIR SINE MIR -27 235 53 358 378 82 0 chr11 6005187 6005383 -144778170 + MIR SINE MIR 2 213 -49 787 181 11 80 chr11 6006135 6006323 -144777230 + MER69A DNA AcHobo 2 176 -1 338 208 0 52 chr11 6006389 6006466 -144777087 + MIR SINE MIR 74 146 -62 323 325 138 8 chr11 6009855 6010101 -144773452 + L2 LINE L2 1727 2004 -1310 397 249 112 81 chr11 6010571 6010768 -144772785 - L2 LINE L2 0 3272 3070 5396 136 92 23 chr11 6011073 6011152 -144772401 + Tigger3b DNA MER2_type 1 73 -2955 1750 177 3 10 chr11 6011152 6011462 -144772091 + AluJo SINE Alu 1 308 -4 5396 136 92 23 chr11 6011462 6012378 -144771175 + Tigger3b DNA MER2_type 73 1065 -166 1269 340 75 41 chr11 6012488 6013384 -144770169 + L2 LINE L2 1773 2698 -616 345 47 0 0 chr11 6013658 6013701 -144769852 + (TG)n Simple_repeat Simple_repeat 2 44 0 32 0 0 0 chr11 6013701 6013733 -144769820 + AT_rich Low_complexity Low_complexity 1 32 0 505 263 89 93 chr11 6013783 6014030 -144769523 + L2 LINE L2 3027 3272 0 217 322 194 8 chr11 6014155 6014397 -144769156 + L2 LINE L2 2940 3226 -46 422 175 62 0 chr11 6014740 6014820 -144768733 + Tigger3b DNA MER2_type 1147 1231 0 251 264 27 55 chr11 6014907 6014998 -144768555 - MIR SINE MIR -109 99 16 2185 100 10 0 chr11 6015052 6015361 -144768192 - AluSp SINE Alu -1 312 1 496 342 25 20 chr11 6015393 6015592 -144767961 + L2 LINE L2 3069 3268 -4 1839 121 78 14 chr11 6016443 6016789 -144766764 + L1MC2 LINE L1 5977 6344 0 183 80 0 0 chr11 6016819 6016844 -144766709 + (TG)n Simple_repeat Simple_repeat 2 26 0 1748 165 7 7 chr11 6017797 6018094 -144765459 + AluJb SINE Alu 1 297 -15 237 278 24 32 chr11 6018948 6019074 -144764479 + C-rich Low_complexity Low_complexity 3 127 0 375 23 0 0 chr11 6019238 6019282 -144764271 + (GA)n Simple_repeat Simple_repeat 1 44 0 1849 284 2 2 chr11 6020866 6021285 -144762268 + LTR16A LTR ERVL 24 442 -8 311 374 168 3 chr11 6021289 6021599 -144761954 + L2 LINE L2 2482 2842 -472 288 154 0 0 chr11 6021686 6021738 -144761815 + T-rich Low_complexity Low_complexity 1 52 0 258 305 102 17 chr11 6021760 6021878 -144761675 + L2 LINE L2 2931 3058 -214 1497 214 123 106 chr11 6021886 6022526 -144761027 + MLT1E2 LTR MaLR 4 626 0 498 267 58 49 chr11 6022624 6022849 -144760704 - L2 LINE L2 -645 2669 2443 650 237 38 38 chr11 6022884 6023095 -144760458 - MIR SINE MIR -44 218 8 233 304 82 38 chr11 6023113 6023214 -144760339 + L2 LINE L2 1266 1361 -1953 267 54 0 0 chr11 6023214 6023251 -144760302 + (CA)n Simple_repeat Simple_repeat 2 38 0 233 304 82 38 chr11 6023251 6023333 -144760220 + L2 LINE L2 1361 1457 -1857 912 291 188 9 chr11 6023333 6023901 -144759652 - L2 LINE L2 -956 2358 1689 308 82 0 20 chr11 6023911 6023960 -144759593 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 218 368 69 10 chr11 6023962 6024166 -144759387 - L2 LINE L2 -1637 1677 1462 669 294 117 35 chr11 6024167 6024562 -144758991 + MLT1J LTR MaLR 85 511 0 344 348 176 27 chr11 6024569 6024645 -144758908 - L2 LINE L2 -1855 1459 1396 207 69 0 0 chr11 6024645 6024674 -144758879 + (TG)n Simple_repeat Simple_repeat 1 29 0 344 348 176 27 chr11 6024674 6024933 -144758620 - L2 LINE L2 -1918 1396 1074 1135 162 65 148 chr11 6025011 6025363 -144758190 + MLT1B LTR MaLR 68 390 0 213 189 57 38 chr11 6025959 6026012 -144757541 - MER5A DNA MER1_type -78 111 58 2625 17 0 0 chr11 6027788 6028088 -144755465 - AluYa5 SINE Alu -11 300 1 463 250 159 6 chr11 6028879 6029055 -144754498 + MIR SINE MIR 47 249 -13 319 220 28 73 chr11 6029076 6029113 -144754440 + MIR SINE MIR 109 146 -116 188 86 29 0 chr11 6029113 6029148 -144754405 + (CAT)n Simple_repeat Simple_repeat 1 36 0 319 220 28 73 chr11 6029148 6029219 -144754334 + MIR SINE MIR 146 212 -50 4067 71 28 33 chr11 6029329 6029689 -144753864 - L1PB2 LINE L1 -5 6146 5789 2019 137 0 3 chr11 6029689 6030002 -144753551 - AluSx SINE Alu 0 312 1 4067 71 28 33 chr11 6030002 6030220 -144753333 - L1PB2 LINE L1 -362 5789 5571 1309 209 65 69 chr11 6030608 6031086 -144752467 + MLT1E2 LTR MaLR 105 606 -20 273 29 0 0 chr11 6031086 6031120 -144752433 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1309 209 65 69 chr11 6031120 6031141 -144752412 + MLT1E2 LTR MaLR 606 626 0 1138 193 0 5 chr11 6031311 6031513 -144752040 + AluJb SINE Alu 1 201 -111 2104 86 17 0 chr11 6031619 6031910 -144751643 - AluY SINE Alu -15 296 1 346 292 77 15 chr11 6032673 6032803 -144750750 - L2 LINE L2 -10 3303 3166 405 0 0 0 chr11 6034047 6034092 -144749461 + (TG)n Simple_repeat Simple_repeat 2 46 0 2287 158 70 2 chr11 6035087 6035487 -144748066 + MSTA LTR MaLR 2 428 0 284 383 101 15 chr11 6035531 6035857 -144747696 - L2 LINE L2 -337 2977 2624 599 296 40 6 chr11 6035877 6036053 -144747500 - MIR SINE MIR -6 256 75 814 233 33 6 chr11 6036416 6036596 -144746957 + MIR SINE MIR 78 262 0 213 351 13 0 chr11 6039911 6039988 -144743565 - L2 LINE L2 0 3272 3195 550 339 60 45 chr11 6040342 6040875 -144742678 - L2 LINE L2 -35 3237 2702 302 358 61 14 chr11 6041221 6041369 -144742184 + L2 LINE L2 2252 2406 -908 1564 209 126 26 chr11 6041485 6041915 -144741638 + MLT1G LTR MaLR 118 590 0 1106 188 27 5 chr11 6041915 6042138 -144741415 - L1ME3A LINE L1 -23 6147 5920 285 360 96 13 chr11 6042149 6042538 -144741015 + L2 LINE L2 2461 2966 -348 750 179 31 0 chr11 6042547 6042709 -144740844 - L1MD3 LINE L1 0 7995 7829 2481 65 0 0 chr11 6042709 6043019 -144740534 - AluSg SINE Alu 0 310 1 219 411 65 0 chr11 6043044 6043168 -144740385 + L2 LINE L2 2952 3083 -189 22 70 0 0 chr11 6043997 6044040 -144739513 + GC_rich Low_complexity Low_complexity 1 43 0 184 239 0 43 chr11 6044669 6044715 -144738838 - L2 LINE L2 -95 3218 3175 362 269 30 2 chr11 6045095 6045213 -144738340 - L1ME1 LINE L1 -44 6122 5992 24 0 0 0 chr11 6045858 6045882 -144737671 + AT_rich Low_complexity Low_complexity 1 24 0 194 231 292 11 chr11 6046068 6046160 -144737393 - MIR SINE MIR -61 147 30 244 274 0 0 chr11 6046617 6046668 -144736885 - L2 LINE L2 -15 3257 3207 258 255 74 47 chr11 6046680 6046829 -144736724 - L2 LINE L2 -1 3312 3160 1455 154 36 121 chr11 6046876 6047206 -144736347 + AluSx SINE Alu 1 302 0 338 335 182 36 chr11 6047215 6047935 -144735618 + L2 LINE L2 2210 3035 -237 507 261 60 22 chr11 6049377 6049511 -144734042 - MIR SINE MIR -123 139 1 584 217 43 14 chr11 6049593 6049731 -144733822 - LTR33 LTR ERVL -4 517 376 2328 98 3 10 chr11 6050317 6050613 -144732940 - AluSp SINE Alu -19 294 1 665 348 65 19 chr11 6050729 6051206 -144732347 + L2 LINE L2 1931 2429 -885 694 249 105 5 chr11 6051297 6051506 -144732047 + MIR SINE MIR 32 261 -1 197 374 119 35 chr11 6051958 6052335 -144731218 + L2 LINE L2 2824 3232 -40 207 100 0 0 chr11 6053020 6053050 -144730503 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 901 259 250 26 chr11 6053059 6053927 -144729626 - L2 LINE L2 0 3313 2245 24 32 0 0 chr11 6055386 6055417 -144728136 + AT_rich Low_complexity Low_complexity 1 31 0 885 286 186 12 chr11 6056720 6057185 -144726368 - L2 LINE L2 -2 3311 2770 251 323 66 61 chr11 6057530 6057719 -144725834 + MER5A DNA MER1_type 1 189 0 795 265 111 59 chr11 6058181 6058657 -144724896 - MLT1E2 LTR MaLR 0 626 5 227 263 0 38 chr11 6060890 6060970 -144722583 + G-rich Low_complexity Low_complexity 6 82 0 554 249 159 5 chr11 6063331 6063520 -144720033 - MIR SINE MIR -17 245 28 259 293 13 0 chr11 6064538 6064613 -144718940 - L2 LINE L2 -228 3044 2969 261 0 0 0 chr11 6064615 6064644 -144718909 + (T)n Simple_repeat Simple_repeat 1 29 0 270 388 50 16 chr11 6065057 6065178 -144718375 - L2 LINE L2 -5 3267 3143 224 280 105 21 chr11 6069352 6069495 -144714058 - L2 LINE L2 -463 2851 2697 198 0 0 0 chr11 6069499 6069521 -144714032 + (T)n Simple_repeat Simple_repeat 1 22 0 2865 113 6 3 chr11 6069687 6070190 -144713363 - HERVH LTR ERV1 -2672 5041 4489 * 5365 106 20 5 chr11 6070185 6071033 -144712520 - HERVH LTR ERV1 -3713 4000 3140 * 14348 110 10 22 chr11 6071012 6073795 -144709758 - HERVH LTR ERV1 -4718 2995 1 2626 72 97 5 chr11 6073805 6074209 -144709344 - LTR7 LTR ERV1 -9 441 1 332 194 32 0 chr11 6074563 6074687 -144708866 + (CTATT)n Simple_repeat Simple_repeat 1 128 0 499 282 106 0 chr11 6074687 6074829 -144708724 + L2 LINE L2 3116 3272 0 277 310 28 0 chr11 6074848 6074919 -144708634 + L2 LINE L2 3199 3271 -42 1128 217 134 26 chr11 6074927 6075351 -144708202 - MLT1C LTR MaLR 0 467 1 283 273 75 127 chr11 6075386 6075823 -144707730 + L2 LINE L2 2628 3052 -220 554 167 80 60 chr11 6077942 6078064 -144705489 - MER5C DNA MER1_type 0 324 197 2420 103 0 0 chr11 6078064 6078375 -144705178 + AluSq SINE Alu 1 311 -2 554 167 80 60 chr11 6078375 6078402 -144705151 - MER5C DNA MER1_type -127 197 172 1524 153 11 0 chr11 6078410 6078672 -144704881 - L1MD3 LINE L1 -5 7990 7726 736 206 39 7 chr11 6078674 6078829 -144704724 - MER5C DNA MER1_type -164 160 1 258 32 0 0 chr11 6079146 6079177 -144704376 + (T)n Simple_repeat Simple_repeat 1 31 0 584 191 0 9 chr11 6079177 6079287 -144704266 - MER50-int LTR ERV1 -7093 112 4 1408 128 0 60 chr11 6079289 6079380 -144704173 - MER50 LTR ERV1 0 734 639 2399 115 0 0 chr11 6079380 6079692 -144703861 + AluSp SINE Alu 1 312 -1 1408 128 0 60 chr11 6079692 6079851 -144703702 - MER50 LTR ERV1 -95 639 499 243 267 84 30 chr11 6080119 6080250 -144703303 + MIR SINE MIR 105 242 -20 410 333 33 0 chr11 6080545 6080665 -144702888 + L2 LINE L2 3147 3270 -2 1537 162 50 44 chr11 6080851 6081148 -144702405 + AluJo SINE Alu 1 299 -13 2264 106 0 3 chr11 6081167 6081460 -144702093 - AluSq SINE Alu -21 292 1 1665 99 14 133 chr11 6081460 6081822 -144701731 + MER4E LTR ERV1 461 779 0 3121 167 23 92 chr11 6081831 6081986 -144701567 + LTR8 LTR ERV1 2 166 -525 2209 82 32 7 chr11 6081986 6082267 -144701286 - AluSq SINE Alu -19 294 7 3121 167 23 92 chr11 6082267 6082852 -144700701 + LTR8 LTR ERV1 166 691 0 817 290 28 0 chr11 6082917 6083134 -144700419 + LTR16A LTR ERVL 215 437 -13 2654 59 0 0 chr11 6083268 6083575 -144699978 + AluY SINE Alu 1 307 -4 393 168 81 117 chr11 6083938 6084051 -144699502 - MER34 LTR ERV1 0 778 449 1230 90 19 0 chr11 6084090 6084246 -144699307 + AluSp SINE Alu 131 289 -24 558 0 0 0 chr11 6084246 6084308 -144699245 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 2245 110 47 69 chr11 6084586 6084865 -144698688 + LTR23 LTR ERV1 1 285 -152 4739 107 25 71 chr11 6084865 6085217 -144698336 - MER4E LTR ERV1 0 779 412 2193 122 0 3 chr11 6085217 6085512 -144698041 + AluSc SINE Alu 1 294 -15 4739 107 25 71 chr11 6085512 6085740 -144697813 - MER4E LTR ERV1 -367 412 175 2139 109 0 11 chr11 6085740 6086024 -144697529 + AluSq SINE Alu 1 281 -32 4739 107 25 71 chr11 6086024 6086050 -144697503 - MER4E LTR ERV1 -604 175 149 396 0 0 0 chr11 6086050 6086094 -144697459 + (TA)n Simple_repeat Simple_repeat 2 45 0 4739 107 25 71 chr11 6086094 6086302 -144697251 - MER4E LTR ERV1 -630 149 1 2245 110 47 69 chr11 6086302 6086469 -144697084 + LTR23 LTR ERV1 285 437 0 977 79 0 7 chr11 6086627 6086766 -144696787 + MER4C LTR ERV1 1 138 -327 1397 92 0 5 chr11 6086768 6086952 -144696601 + AluSp SINE Alu 130 312 -1 1917 85 115 3 chr11 6086952 6087257 -144696296 + MER4C LTR ERV1 127 465 0 557 223 121 25 chr11 6087259 6087416 -144696137 + MIR SINE MIR 53 224 -38 946 191 126 65 chr11 6087418 6087800 -144695753 - LTR56 LTR ERV1 -21 424 20 180 0 0 0 chr11 6087802 6087822 -144695731 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 292 98 98 0 chr11 6088014 6088065 -144695488 + MIR SINE MIR 102 157 -105 744 176 53 18 chr11 6088067 6088237 -144695316 - LTR49 LTR ERV1 0 595 420 451 174 214 8 chr11 6088235 6088534 -144695019 - LTR29 LTR ERV1 -198 424 1 * 344 269 28 9 chr11 6088534 6088642 -144694911 + MIR SINE MIR 153 262 0 932 133 0 47 chr11 6091119 6091269 -144692284 - FLAM_C SINE Alu 0 143 1 2397 98 10 3 chr11 6091274 6091580 -144691973 - AluSc SINE Alu -1 308 1 695 227 133 10 chr11 6095431 6095634 -144687919 - MIR SINE MIR -20 242 15 269 351 137 16 chr11 6096343 6096591 -144686962 + L2 LINE L2 2951 3228 -44 684 294 38 13 chr11 6096971 6097206 -144686347 + L2 LINE L2 3073 3313 0 201 333 49 12 chr11 6097640 6097721 -144685832 + MIR SINE MIR 19 102 -106 1375 315 79 28 chr11 6097727 6098570 -144684983 + L2 LINE L2 1931 2817 -497 334 338 152 21 chr11 6098606 6098988 -144684565 + L2 LINE L2 2881 3312 -1 2241 109 3 3 chr11 6099042 6099344 -144684209 + AluSx SINE Alu 1 302 -10 229 204 0 0 chr11 6102845 6102889 -144680664 + GA-rich Low_complexity Low_complexity 1 44 0 417 340 66 33 chr11 6105130 6105465 -144678088 + L2 LINE L2 2550 2895 -419 220 322 91 16 chr11 6105656 6105777 -144677776 + L2 LINE L2 3162 3291 -22 184 135 19 19 chr11 6105789 6105841 -144677712 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 445 290 76 58 chr11 6106252 6106476 -144677077 + Charlie8 DNA MER1_type 12 239 -2178 701 177 38 144 chr11 6106484 6106556 -144676997 + L1MC5 LINE L1 7203 7281 -680 2569 26 16 7 chr11 6106556 6106860 -144676693 - AluYb8 SINE Alu -11 307 1 701 177 38 144 chr11 6106860 6107154 -144676399 + L1MC5 LINE L1 7281 7530 -431 702 193 0 0 chr11 6107155 6107274 -144676279 + AluJo/FLAM SINE Alu 2 120 -192 2398 109 3 0 chr11 6107274 6107585 -144675968 - AluSq SINE Alu -1 312 1 860 181 0 0 chr11 6107585 6107718 -144675835 - AluJb SINE Alu -177 135 3 607 197 67 84 chr11 6107743 6107855 -144675698 + L1MC5 LINE L1 7629 7741 -220 1518 219 0 17 chr11 6107855 6108156 -144675397 - AluJb SINE Alu -16 296 1 607 197 67 84 chr11 6108156 6108327 -144675226 + L1MC5 LINE L1 7741 7907 -54 307 68 0 0 chr11 6108833 6108877 -144674676 + AluSc SINE Alu 250 293 -6 576 299 73 17 chr11 6108931 6109165 -144674388 + MIR SINE MIR 2 248 -14 264 189 0 0 chr11 6109614 6109688 -144673865 + CT-rich Low_complexity Low_complexity 2 75 0 2356 101 6 16 chr11 6110916 6111232 -144672321 - AluSq SINE Alu 0 313 1 884 267 50 23 chr11 6111236 6111536 -144672017 + L2 LINE L2 3006 3313 0 1720 56 112 72 chr11 6112301 6112552 -144671001 - AluSq SINE Alu -52 261 1 331 366 50 24 chr11 6112754 6113117 -144670436 + L2 LINE L2 2684 3059 -213 401 329 36 0 chr11 6114116 6114256 -144669297 - L2 LINE L2 -24 3248 3104 241 158 105 66 chr11 6114235 6114311 -144669242 + L2 LINE L2 3231 3309 -4 * 1195 317 113 29 chr11 6114530 6115499 -144668054 + L2 LINE L2 1527 2577 -737 2157 96 4 7 chr11 6115527 6115807 -144667746 - AluSx SINE Alu -16 296 18 668 290 90 30 chr11 6115824 6116329 -144667224 + L2 LINE L2 2772 3313 0 1583 281 152 29 chr11 6116341 6117210 -144666343 - L2 LINE L2 -609 2705 1730 29 47 0 0 chr11 6117860 6117903 -144665650 + GC_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr11 6118198 6118219 -144665334 + GC_rich Low_complexity Low_complexity 1 21 0 529 289 65 9 chr11 6118309 6118520 -144665033 - MIR SINE MIR 0 262 39 1473 157 73 4 chr11 6118829 6119103 -144664450 - AluJo SINE Alu -19 293 1 403 208 33 25 chr11 6119315 6119435 -144664118 - L1MC5 LINE L1 -21 7940 7820 233 250 0 18 chr11 6119538 6119594 -144663959 - L2 LINE L2 -232 3040 2986 189 0 0 0 chr11 6119610 6119631 -144663922 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 774 339 65 20 chr11 6119631 6119960 -144663593 - L2 LINE L2 -5 3267 2954 2152 161 44 53 chr11 6119960 6120141 -144663412 + MSTA LTR MaLR 1 182 -246 2092 112 3 11 chr11 6120141 6120451 -144663102 + AluSq SINE Alu 1 308 0 2152 161 44 53 chr11 6120451 6120626 -144662927 + MSTA LTR MaLR 182 356 -72 2517 87 0 0 chr11 6120626 6120936 -144662617 - AluY SINE Alu -1 310 1 2152 161 44 53 chr11 6120936 6121007 -144662546 + MSTA LTR MaLR 356 426 -2 774 339 65 20 chr11 6121007 6121439 -144662114 - L2 LINE L2 -318 2954 2425 662 203 0 7 chr11 6122291 6122429 -144661124 - FLAM_C SINE Alu -4 139 3 653 319 62 53 chr11 6122461 6122910 -144660643 - L2 LINE L2 -1142 2172 1720 3858 132 18 26 chr11 6122953 6123672 -144659881 + L1MA7 LINE L1 5576 6288 -3 2253 93 0 27 chr11 6124028 6124328 -144659225 - AluSg SINE Alu -18 292 1 1187 284 105 59 chr11 6124421 6124930 -144658623 + MLT1K LTR MaLR 3 540 -48 2020 134 3 3 chr11 6124930 6125222 -144658331 - AluSx SINE Alu -15 297 6 1187 284 105 59 chr11 6125222 6125257 -144658296 + MLT1K LTR MaLR 540 572 -16 276 216 86 60 chr11 6125292 6125408 -144658145 + LTR50 LTR ERVL 17 135 -660 428 258 102 21 chr11 6125586 6125772 -144657781 + LTR33A LTR ERVL 323 523 0 24 0 0 0 chr11 6126021 6126045 -144657508 + AT_rich Low_complexity Low_complexity 1 24 0 1738 171 11 7 chr11 6126045 6126326 -144657227 - AluJo SINE Alu -30 282 1 659 335 47 35 chr11 6126988 6127418 -144656135 + L2 LINE L2 2466 2900 -414 1708 209 8 11 chr11 6127800 6128163 -144655390 + MLT1A1 LTR MaLR 4 365 0 2448 286 114 32 chr11 6131232 6131954 -144651599 + L2 LINE L2 1738 2399 -914 2195 104 10 3 chr11 6131954 6132243 -144651310 - AluSq SINE Alu -22 291 1 2448 286 114 32 chr11 6132243 6132962 -144650591 + L2 LINE L2 2399 3309 -4 2019 161 0 3 chr11 6133086 6133397 -144650156 - AluJb SINE Alu -2 310 1 1213 59 0 0 chr11 6133713 6133849 -144649704 + AluSx SINE Alu 1 136 -177 1298 110 0 0 chr11 6133879 6134065 -144649488 + AluSx SINE Alu 121 306 0 1697 153 67 27 chr11 6134219 6134519 -144649034 - AluJb SINE Alu 0 312 1 193 403 131 14 chr11 6136419 6136838 -144646715 - L2 LINE L2 -1 3271 2804 230 191 0 32 chr11 6137023 6137086 -144646467 + (CCA)n Simple_repeat Simple_repeat 3 63 0 279 114 0 0 chr11 6137590 6137634 -144645919 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 666 345 74 30 chr11 6137636 6138068 -144645485 - L2 LINE L2 -15 3257 2807 289 331 222 3 chr11 6138113 6138424 -144645129 - L2 LINE L2 -897 2417 2039 580 252 60 13 chr11 6138448 6138599 -144644954 - MER91A DNA MER1_type -16 180 23 180 315 18 36 chr11 6138628 6138739 -144644814 - L2 LINE L2 -1287 2027 1919 216 0 0 0 chr11 6139329 6139353 -144644200 + (A)n Simple_repeat Simple_repeat 1 24 0 426 284 226 8 chr11 6140567 6140810 -144642743 + L2 LINE L2 3017 3312 -1 1251 182 13 98 chr11 6143041 6143437 -144640116 + MLT1A1 LTR MaLR 1 362 -3 397 295 85 0 chr11 6143437 6143566 -144639987 - MIR SINE MIR -104 158 19 2096 169 61 2 chr11 6143588 6143997 -144639556 + MER63B DNA MER1_type 2 434 -2 334 322 11 0 chr11 6144022 6144109 -144639444 + L2 LINE L2 3210 3297 -16 2383 95 3 3 chr11 6144318 6144623 -144638930 - AluY SINE Alu -6 305 1 760 309 96 13 chr11 6144785 6145312 -144638241 + L2 LINE L2 2737 3313 0 2508 94 0 0 chr11 6146023 6146330 -144637223 - AluSq SINE Alu -6 307 1 194 338 42 0 chr11 6146554 6146625 -144636928 - L2 LINE L2 -7 3265 3192 537 328 179 33 chr11 6148294 6149200 -144634353 + L2 LINE L2 2233 3272 0 181 107 0 0 chr11 6150292 6150320 -144633233 - L2 LINE L2 0 3272 3245 649 272 96 43 chr11 6150398 6150944 -144632609 - L2 LINE L2 -213 3059 2428 202 368 35 18 chr11 6151566 6151680 -144631873 + L2 LINE L2 2931 3046 -226 431 298 111 17 chr11 6151750 6151931 -144631622 + L2 LINE L2 3111 3308 -5 279 211 293 0 chr11 6151956 6152089 -144631464 + L2 LINE L2 2297 2468 -846 254 178 0 0 chr11 6152204 6152249 -144631304 - L2 LINE L2 -94 3178 3134 203 100 0 25 chr11 6152249 6152289 -144631264 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1999 134 13 39 chr11 6152845 6153151 -144630402 + AluJb SINE Alu 1 298 -14 563 247 147 0 chr11 6153954 6154124 -144629429 - MIR SINE MIR -62 200 6 588 284 48 52 chr11 6207487 6207737 -144575816 + MIR SINE MIR 6 254 -8 211 301 108 52 chr11 6207823 6208036 -144575517 - L2 LINE L2 -220 3052 2828 197 222 122 56 chr11 6208263 6208353 -144575200 - MIR SINE MIR -148 114 19 * 735 361 138 7 chr11 6208337 6209057 -144574496 - L2 LINE L2 -681 2633 1820 221 320 0 13 chr11 6209469 6209547 -144574006 + L2 LINE L2 290 366 -2948 346 135 0 0 chr11 6209551 6209603 -144573950 - MIR SINE MIR -28 234 183 2423 96 0 19 chr11 6209622 6209936 -144573617 - AluSx SINE Alu -2 310 3 462 298 186 34 chr11 6209962 6210408 -144573145 + L2 LINE L2 386 899 -2415 294 243 68 0 chr11 6210477 6210551 -144573002 + L2 LINE L2 2605 2683 -631 547 234 60 6 chr11 6211016 6211183 -144572370 + MER104 DNA MER2_type 3 178 -2 416 198 279 10 chr11 6211893 6212090 -144571463 - L1ME4a LINE L1 -15 6106 5857 201 294 71 35 chr11 6212168 6212253 -144571300 - MIR SINE MIR -155 107 20 11703 108 35 51 chr11 6215137 6217126 -144566427 - Tigger1 DNA MER2_type -462 1956 1 670 292 146 13 chr11 6218102 6218582 -144564971 + L2 LINE L2 2683 3220 -93 336 240 55 110 chr11 6218600 6218681 -144564872 + MIR SINE MIR 11 82 -180 1974 161 0 13 chr11 6218681 6218997 -144564556 - AluJb SINE Alu 0 312 1 336 240 55 110 chr11 6218997 6219061 -144564492 + MIR SINE MIR 82 148 -114 891 153 0 8 chr11 6219062 6219193 -144564360 + FLAM_A SINE Alu 2 131 -2 2426 97 0 0 chr11 6219210 6219520 -144564033 + AluSg SINE Alu 1 310 0 27 62 0 0 chr11 6219522 6219570 -144563983 + AT_rich Low_complexity Low_complexity 1 48 0 363 268 134 0 chr11 6219570 6219682 -144563871 + MIR SINE MIR 136 262 0 266 268 24 0 chr11 6220228 6220310 -144563243 - L2 LINE L2 -2914 400 317 830 270 68 89 chr11 6220411 6220877 -144562676 + L2 LINE L2 2736 3210 -103 603 114 19 19 chr11 6220877 6220982 -144562571 + L1MA4A LINE L1 6188 6292 -11 830 270 68 89 chr11 6220982 6220997 -144562556 + L2 LINE L2 3210 3224 -89 2254 103 3 3 chr11 6220997 6221298 -144562255 + AluSx SINE Alu 7 307 -5 830 270 68 89 chr11 6221298 6221406 -144562147 + L2 LINE L2 3224 3313 0 536 236 31 146 chr11 6221816 6222102 -144561451 - MER102a DNA MER1_type -1087 330 83 2313 101 0 7 chr11 6222102 6222398 -144561155 - AluSq SINE Alu -19 294 1 536 236 31 146 chr11 6222398 6222433 -144561120 - MER102a DNA MER1_type -1334 83 46 271 286 82 58 chr11 6222583 6222754 -144560799 + MIR SINE MIR 87 261 -1 2446 50 0 7 chr11 6224247 6224530 -144559023 - AluY SINE Alu -30 281 1 409 310 25 49 chr11 6224636 6224839 -144558714 + L2 LINE L2 3062 3259 -54 1098 268 29 20 chr11 6225219 6225562 -144557991 - L1ME3 LINE L1 0 6162 5817 802 218 53 0 chr11 6225666 6225854 -144557699 - L2 LINE L2 -971 2343 2146 262 245 92 31 chr11 6226084 6226182 -144557371 + LTR67 LTR ERVL 97 200 -357 280 287 43 0 chr11 6226351 6226445 -144557108 + LTR67 LTR ERVL 458 555 -2 288 0 0 0 chr11 6226521 6226553 -144557000 + (TG)n Simple_repeat Simple_repeat 2 33 0 430 315 105 6 chr11 6229054 6229235 -144554318 + MIR SINE MIR 48 246 -16 247 272 48 40 chr11 6229391 6229516 -144554037 + L2 LINE L2 2443 2568 -746 258 32 0 0 chr11 6229640 6229671 -144553882 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 544 252 37 7 chr11 6230339 6230474 -144553079 + MIR SINE MIR 15 153 -109 621 322 41 68 chr11 6230728 6231429 -144552124 + L2 LINE L2 2553 3237 -35 1361 295 212 33 chr11 6231461 6231923 -144551630 - L2 LINE L2 -8 3305 2927 1833 166 3 14 chr11 6231923 6232219 -144551334 + AluJo SINE Alu 1 293 -19 1361 295 212 33 chr11 6232219 6232441 -144551112 - L2 LINE L2 -386 2927 2746 875 165 0 0 chr11 6232441 6232574 -144550979 + FLAM_C SINE Alu 1 133 0 1361 295 212 33 chr11 6232574 6233206 -144550347 - L2 LINE L2 -567 2746 1747 378 0 0 0 chr11 6233294 6233336 -144550217 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 247 233 96 14 chr11 6234059 6234132 -144549421 - L2 LINE L2 -45 3227 3149 205 284 49 107 chr11 6234373 6234598 -144548955 - L2 LINE L2 -458 2856 2645 875 239 0 0 chr11 6234807 6234983 -144548570 - FRAM SINE Alu -2 174 1 967 303 130 23 chr11 6234983 6235498 -144548055 - L2 LINE L2 -954 2360 1791 431 279 38 94 chr11 6235941 6236228 -144547325 - L2 LINE L2 -7 3265 2995 224 0 0 61 chr11 6236382 6236415 -144547138 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 200 400 24 0 chr11 6236416 6236541 -144547012 + L2 LINE L2 2415 2542 -772 266 271 132 78 chr11 6236549 6236678 -144546875 + MIR3 SINE MIR 38 173 -35 278 300 0 0 chr11 6237005 6237075 -144546478 + L2 LINE L2 3197 3266 -6 257 283 261 7 chr11 6237131 6237269 -144546284 + L3 LINE CR1 1314 1486 -91 214 120 20 60 chr11 6237772 6237822 -144545731 + G-rich Low_complexity Low_complexity 3 50 0 26 82 0 0 chr11 6238281 6238342 -144545211 + GC_rich Low_complexity Low_complexity 1 61 0 213 237 0 41 chr11 6238422 6238519 -144545034 + C-rich Low_complexity Low_complexity 2 94 0 404 203 175 68 chr11 6239063 6239240 -144544313 - MIR SINE MIR -17 245 50 783 284 50 67 chr11 6239939 6240093 -144543460 + L2 LINE L2 2864 3019 -253 2391 58 0 32 chr11 6240093 6240402 -144543151 - AluY SINE Alu -12 299 1 783 284 50 67 chr11 6240402 6240663 -144542890 + L2 LINE L2 3019 3272 0 474 248 67 0 chr11 6245115 6245220 -144538333 - L2 LINE L2 -3 3310 3199 256 313 36 18 chr11 6246970 6247082 -144536471 - MIR SINE MIR -40 222 109 296 351 90 45 chr11 6247874 6248162 -144535391 + L2 LINE L2 1138 1438 -1876 209 300 58 4 chr11 6248242 6248313 -144535240 - MIR SINE MIR -133 75 3 296 286 101 8 chr11 6248322 6248441 -144535112 - MIR SINE MIR -10 252 123 2425 73 0 17 chr11 6248503 6248805 -144534748 - AluSg SINE Alu -13 297 1 190 329 14 14 chr11 6249117 6249187 -144534366 - MIR SINE MIR -173 89 20 1611 304 220 45 chr11 6249666 6251696 -144531857 + L2 LINE L2 665 3061 -211 2255 119 47 39 chr11 6252791 6253152 -144530401 - THE1B LTR MaLR 0 364 1 449 260 67 0 chr11 6253905 6254009 -144529544 + L2 LINE L2 3197 3307 -6 1747 134 28 14 chr11 6254340 6254631 -144528922 - AluSq SINE Alu -14 299 5 30 0 0 0 chr11 6254704 6254734 -144528819 + AT_rich Low_complexity Low_complexity 1 30 0 363 324 105 32 chr11 6254943 6255570 -144527983 + HAL1b LINE L1 62 734 -614 239 222 0 37 chr11 6255619 6255673 -144527880 + MLT1K LTR MaLR 337 388 -200 450 292 38 52 chr11 6255775 6256024 -144527529 + MLT1L LTR MaLR 109 416 -199 307 198 74 12 chr11 6256120 6256201 -144527352 + MLT1L LTR MaLR 437 522 -93 213 39 0 0 chr11 6256201 6256227 -144527326 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 1777 152 7 11 chr11 6257120 6257389 -144526164 - AluJo SINE Alu -44 268 1 534 104 13 0 chr11 6258461 6258538 -144525015 - L1PA15 LINE L1 -6 6159 6082 2179 113 7 0 chr11 6258638 6258930 -144524623 - AluSq SINE Alu -19 294 1 13679 160 13 4 chr11 6258930 6261125 -144522428 - L1M1 LINE L1 -5106 2459 245 2049 218 59 49 chr11 6261129 6261249 -144522304 + L1M4 LINE L1 2933 3050 -3096 2354 83 0 32 chr11 6261249 6261563 -144521990 + AluSx SINE Alu 1 304 -8 2049 218 59 49 chr11 6261563 6262014 -144521539 + L1M4 LINE L1 3050 3515 -2631 414 0 0 0 chr11 6262014 6262060 -144521493 + (CA)n Simple_repeat Simple_repeat 1 46 0 2049 218 59 49 chr11 6262060 6262180 -144521373 + L1M4 LINE L1 3515 3632 -2514 294 95 0 0 chr11 6262181 6262223 -144521330 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 1413 199 0 31 chr11 6262247 6262533 -144521020 - AluJo SINE Alu 0 312 36 330 361 57 0 chr11 6262557 6262715 -144520838 - L1M4 LINE L1 -529 5655 5489 755 182 42 0 chr11 6262739 6262882 -144520671 + MIR SINE MIR 21 169 -93 978 118 0 0 chr11 6263480 6263615 -144519938 - AluSq/x SINE Alu -174 139 5 413 313 68 11 chr11 6263619 6263795 -144519758 + L2 LINE L2 3128 3313 0 940 176 140 0 chr11 6263974 6264167 -144519386 - MLT1A1 LTR MaLR 0 365 146 740 137 11 0 chr11 6264169 6264350 -144519203 - L1MA9 LINE L1 -17 6295 6017 * 2032 116 9 19 chr11 6264349 6264668 -144518885 + L1MA9 LINE L1 5604 5919 -393 838 176 0 13 chr11 6264684 6264837 -144518716 - MLT1A1 LTR MaLR -214 151 1 473 254 9 0 chr11 6264956 6265070 -144518483 - HAL1 LINE L1 -815 1692 1578 1815 137 29 11 chr11 6265088 6265365 -144518188 - AluJb SINE Alu -26 286 5 343 291 55 24 chr11 6265526 6265653 -144517900 - L2 LINE L2 0 3272 3142 305 278 93 9 chr11 6268137 6268245 -144515308 + MIR SINE MIR 120 236 -26 419 276 35 25 chr11 6268472 6268675 -144514878 + L1MC4 LINE L1 7820 8024 -18 1696 182 55 0 chr11 6268733 6269024 -144514529 - AluJo SINE Alu -5 307 1 992 60 0 0 chr11 6269070 6269203 -144514350 - L1P4 LINE L1 -729 5432 5300 590 168 36 15 chr11 6269314 6269451 -144514102 - L1MA3 LINE L1 -255 6050 5911 4578 203 126 12 chr11 6269452 6270872 -144512681 - MER52A LTR ERV1 0 1755 1 15010 166 25 17 chr11 6270872 6271492 -144512061 - L1MA3 LINE L1 -392 5913 5300 2021 129 13 29 chr11 6271492 6271803 -144511750 - AluSx SINE Alu -6 306 1 2089 125 0 42 chr11 6271807 6272118 -144511435 - AluSq SINE Alu -15 298 1 15010 166 25 17 chr11 6272118 6275042 -144508511 - L1MA3 LINE L1 -1007 5298 2316 680 254 57 63 chr11 6275182 6275516 -144508037 + L1ME4a LINE L1 5518 5849 -272 5897 225 48 35 chr11 6275597 6276193 -144507360 - L1M4 LINE L1 -1278 4868 4281 2175 107 0 7 chr11 6276193 6276491 -144507062 - AluSc SINE Alu -13 296 1 5897 225 48 35 chr11 6276491 6277688 -144505865 - L1M4 LINE L1 -1865 4281 3051 501 171 0 0 chr11 6277692 6277768 -144505785 - FLAM SINE Alu -16 127 52 1044 261 93 66 chr11 6277781 6278416 -144505137 - L1MEc LINE L1 -4337 2059 1408 668 274 39 6 chr11 6278425 6278604 -144504949 - MLT1J1 LTR MaLR -261 185 1 1927 122 37 17 chr11 6279020 6279316 -144504237 - AluSg SINE Alu -8 302 1 275 206 79 20 chr11 6279651 6279765 -144503788 + L1MC/D LINE L1 5718 5851 -313 249 213 126 63 chr11 6279836 6279963 -144503590 + LTR50 LTR ERVL 23 157 -638 648 276 121 31 chr11 6280141 6280464 -144503089 + LTR50 LTR ERVL 442 793 -2 210 87 65 0 chr11 6281693 6281739 -144501814 + (TA)n Simple_repeat Simple_repeat 1 49 0 962 206 25 0 chr11 6281740 6281900 -144501653 - FRAM SINE Alu -2 164 1 703 287 141 23 chr11 6282470 6282860 -144500693 - MLT1J2 LTR MaLR -14 436 1 913 269 72 31 chr11 6282911 6283260 -144500293 - L2 LINE L2 -337 2977 2615 375 205 0 24 chr11 6283991 6284074 -144499479 + L2 LINE L2 1354 1434 -1880 223 224 105 13 chr11 6284236 6284312 -144499241 + MIR SINE MIR 164 246 -16 586 217 28 21 chr11 6284360 6284503 -144499050 + MER104 DNA Tc2 35 178 -2 330 326 29 36 chr11 6284914 6285052 -144498501 + L2 LINE L2 3104 3240 -32 1782 156 44 0 chr11 6286958 6287228 -144496325 - AluJb SINE Alu -30 282 1 3609 211 78 75 chr11 6287452 6288744 -144494809 + L1MC4 LINE L1 6658 7953 -89 21 36 0 0 chr11 6289325 6289353 -144494200 + AT_rich Low_complexity Low_complexity 1 28 0 246 62 0 0 chr11 6289524 6289556 -144493997 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1051 284 39 70 chr11 6289556 6289832 -144493721 - L2 LINE L2 -13 3300 3044 2320 96 0 0 chr11 6289832 6290125 -144493428 + AluSg SINE Alu 1 293 -17 1051 284 39 70 chr11 6290125 6290330 -144493223 - L2 LINE L2 -269 3044 2834 222 37 0 0 chr11 6291301 6291328 -144492225 + (GGCTG)n Simple_repeat Simple_repeat 2 28 0 367 321 62 55 chr11 6292658 6292948 -144490605 - L2 LINE L2 -49 3223 2932 725 309 73 36 chr11 6293746 6294076 -144489477 - L2 LINE L2 -431 2883 2542 2292 114 7 3 chr11 6295859 6296167 -144487386 + AluSx SINE Alu 1 309 -3 311 333 44 90 chr11 6296609 6296906 -144486647 - L2 LINE L2 0 3272 2990 1930 136 0 36 chr11 6296906 6297215 -144486338 + AluJo SINE Alu 1 298 -14 311 333 44 90 chr11 6297215 6297238 -144486315 - L2 LINE L2 -282 2990 2967 792 242 34 86 chr11 6297243 6297416 -144486137 + L2 LINE L2 2998 3148 -165 2130 85 0 4 chr11 6297416 6297688 -144485865 - AluY SINE Alu -6 305 35 792 242 34 86 chr11 6297688 6297841 -144485712 + L2 LINE L2 3148 3307 -6 2182 121 41 89 chr11 6298007 6298242 -144485311 + MLT2C1 LTR ERVL 1 209 -188 862 191 56 31 chr11 6298242 6298404 -144485149 + FRAM SINE Alu 1 166 0 2182 121 41 89 chr11 6298404 6298583 -144484970 + MLT2C1 LTR ERVL 209 395 -2 330 324 97 0 chr11 6298595 6298771 -144484782 - L2 LINE L2 -1903 1411 1219 924 183 11 11 chr11 6298805 6298984 -144484569 - AluJb SINE Alu -7 305 140 761 254 141 5 chr11 6299126 6299346 -144484207 - MIR SINE MIR -3 259 14 740 274 115 10 chr11 6299374 6299688 -144483865 - L2 LINE L2 -5 3308 2962 804 264 204 39 chr11 6299715 6300121 -144483432 + MLT1J LTR MaLR 9 481 -30 2019 208 46 59 chr11 6300129 6300152 -144483401 + MLT1E2 LTR MaLR 1 23 -603 3794 107 27 4 chr11 6300152 6300667 -144482886 + MER1A DNA MER1_type 1 527 0 2019 208 46 59 chr11 6300667 6301283 -144482270 + MLT1E2 LTR MaLR 23 620 -6 230 154 0 0 chr11 6301289 6301328 -144482225 - MLT2B1 LTR ERVL -4 410 372 * 1665 174 47 4 chr11 6301322 6301674 -144481879 - MLT2B1 LTR ERVL -97 418 2 838 163 15 0 chr11 6301674 6301809 -144481744 + FLAM_C SINE Alu 1 137 -6 1798 220 58 111 chr11 6301842 6302598 -144480955 - L2 LINE L2 -352 2962 2247 2524 42 0 7 chr11 6302624 6302931 -144480622 - AluY SINE Alu -6 305 1 2293 110 0 0 chr11 6305675 6305985 -144477568 - AluSg SINE Alu 0 310 1 2066 122 0 3 chr11 6306085 6306379 -144477174 - AluSx SINE Alu -15 297 5 404 268 74 21 chr11 6306848 6307038 -144476515 - L2 LINE L2 0 3313 3114 243 330 30 0 chr11 6307411 6307511 -144476042 + L2 LINE L2 3211 3313 0 189 0 0 0 chr11 6308809 6308830 -144474723 + (A)n Simple_repeat Simple_repeat 1 21 0 2142 99 3 7 chr11 6308834 6309138 -144474415 + AluSx SINE Alu 1 303 -9 324 283 117 38 chr11 6309141 6309381 -144474172 + L2 LINE L2 2033 2291 -1023 425 300 159 5 chr11 6310485 6310705 -144472848 - MIR SINE MIR 0 262 9 189 121 0 0 chr11 6313035 6313068 -144470485 + (CA)n Simple_repeat Simple_repeat 2 34 0 309 274 17 43 chr11 6313791 6313908 -144469645 - L2 LINE L2 -569 2745 2632 234 313 178 24 chr11 6314161 6314508 -144469045 + L2 LINE L2 2649 3058 -214 34 24 0 0 chr11 6314968 6315009 -144468544 + GC_rich Low_complexity Low_complexity 1 41 0 970 320 167 18 chr11 6315710 6316733 -144466820 - L2 LINE L2 -209 3063 1916 1263 129 5 5 chr11 6316744 6316938 -144466615 - L1PA13 LINE L1 -14 6149 5956 2360 73 3 0 chr11 6317121 6317422 -144466131 + AluSg SINE Alu 1 302 -8 212 296 144 8 chr11 6319065 6319197 -144464356 - L2 LINE L2 -1003 2311 2162 206 290 194 11 chr11 6322247 6322340 -144461213 + MIR SINE MIR 20 129 -79 38 61 0 0 chr11 6323334 6323400 -144460153 + GC_rich Low_complexity Low_complexity 1 66 0 221 393 76 7 chr11 6324004 6324149 -144459404 - L2 LINE L2 -12 3260 3106 294 357 104 0 chr11 6324205 6324387 -144459166 - MIR SINE MIR -10 252 52 209 373 59 0 chr11 6324782 6324884 -144458669 - L2 LINE L2 -709 2605 2498 185 332 82 29 chr11 6324887 6325095 -144458458 - L2 LINE L2 -775 2539 2321 202 370 28 19 chr11 6329764 6329872 -144453681 - MIR SINE MIR -140 122 14 289 273 45 36 chr11 6330903 6331013 -144452540 + MIR SINE MIR 73 183 -79 286 343 82 40 chr11 6331466 6331944 -144451609 + L2 LINE L2 479 976 -2338 1432 233 110 21 chr11 6339071 6339605 -144443948 + Charlie1 DNA MER1_type 15 2761 0 487 261 0 49 chr11 6340271 6340413 -144443140 + MIR3 SINE MIR 9 143 -65 2578 179 31 17 chr11 6345687 6346207 -144437346 + MER82 DNA MER2_type 98 624 -29 239 267 0 0 chr11 6346465 6346525 -144437028 + L2 LINE L2 3254 3313 0 323 318 189 43 chr11 6347404 6347420 -144436133 + L2 LINE L2 1992 2004 -1310 1847 158 13 0 chr11 6347420 6347723 -144435830 - AluJo SINE Alu -5 307 1 792 167 8 0 chr11 6347723 6347849 -144435704 - FLAM_A SINE Alu -3 130 4 323 318 189 43 chr11 6347849 6348388 -144435165 + L2 LINE L2 2003 2629 -685 1194 174 38 9 chr11 6348423 6348636 -144434917 - MER20 DNA MER1_type 0 219 1 540 362 111 15 chr11 6348717 6349123 -144434430 + L2 LINE L2 2827 3271 -1 301 258 133 23 chr11 6349469 6349597 -144433956 + L2 LINE L2 2617 2758 -556 262 296 142 17 chr11 6349817 6349993 -144433560 + L2 LINE L2 3075 3272 0 1780 78 22 0 chr11 6350110 6350340 -144433213 + AluY SINE Alu 64 298 -13 240 111 0 0 chr11 6352726 6352762 -144430791 + (CAG)n Simple_repeat Simple_repeat 1 36 0 188 217 50 17 chr11 6353318 6353378 -144430175 + L2 LINE L2 1618 1679 -1635 513 291 98 81 chr11 6353461 6354292 -144429261 - L2 LINE L2 -5 3267 2407 276 309 155 46 chr11 6354519 6355405 -144428148 + L2 LINE L2 1799 2780 -534 256 318 114 15 chr11 6355784 6355916 -144427637 + L2 LINE L2 3125 3269 -3 180 306 56 0 chr11 6356233 6356305 -144427248 + MIR SINE MIR 113 188 -74 281 305 13 7 chr11 6357224 6357378 -144426175 + (CA)n Simple_repeat Simple_repeat 2 156 0 450 289 46 16 chr11 6358760 6358943 -144424610 - MIR SINE MIR -13 249 64 537 308 58 25 chr11 6359315 6359745 -144423808 - L2 LINE L2 -999 2315 1823 743 226 179 0 chr11 6359847 6360059 -144423494 + MIR SINE MIR 2 251 -11 630 275 72 13 chr11 6360074 6360310 -144423243 + MIR SINE MIR 7 256 -6 209 135 0 27 chr11 6360355 6360392 -144423161 - MIR SINE MIR -64 144 109 388 300 58 0 chr11 6360779 6360899 -144422654 - L2 LINE L2 -6 3307 3181 220 288 50 0 chr11 6361187 6361267 -144422286 - MIR SINE MIR -77 185 102 212 83 0 28 chr11 6361322 6361358 -144422195 + (TTTC)n Simple_repeat Simple_repeat 4 38 0 850 324 96 57 chr11 6362440 6364008 -144419545 - L2 LINE L2 -255 3017 1376 629 313 139 17 chr11 6364004 6364727 -144418826 + L2 LINE L2 2459 3272 0 * 212 98 0 24 chr11 6366718 6366759 -144416794 + (CGGG)n Simple_repeat Simple_repeat 3 42 0 1435 159 37 26 chr11 6367048 6367436 -144416117 - L1M2 LINE L1 -743 5548 5160 1094 220 0 8 chr11 6367433 6367669 -144415884 - L1M2 LINE L1 -2267 3879 3646 * 4977 61 2 0 chr11 6367740 6368359 -144415194 - L1PA6 LINE L1 0 6154 5535 23 54 0 0 chr11 6368508 6368545 -144415008 + AT_rich Low_complexity Low_complexity 1 37 0 530 204 32 83 chr11 6368884 6369041 -144414512 - L1ME3A LINE L1 -3 6167 6019 833 215 158 13 chr11 6369228 6369456 -144414097 - MIR SINE MIR 0 262 2 276 247 0 0 chr11 6369621 6369694 -144413859 + L2 LINE L2 2219 2291 -1023 309 326 8 36 chr11 6370375 6370644 -144412909 + GA-rich Low_complexity Low_complexity 1 261 0 * 326 300 18 41 chr11 6370641 6370811 -144412742 + G-rich Low_complexity Low_complexity 3 168 0 3516 70 2 4 chr11 6370916 6371389 -144412164 - L1P LINE L1 -987 5159 4688 820 319 80 30 chr11 6371399 6371639 -144411914 - LTR16C LTR ERVL 0 491 219 2083 162 75 15 chr11 6371639 6372041 -144411512 - MSTB LTR MaLR 0 426 1 820 319 80 30 chr11 6372041 6372226 -144411327 - LTR16C LTR ERVL -272 219 45 6742 64 26 0 chr11 6372889 6374444 -144409109 + L1PA7 LINE L1 4562 6148 -6 1048 236 15 30 chr11 6374451 6374703 -144408850 + L1ME3A LINE L1 5574 5823 -347 1679 124 16 8 chr11 6374703 6374952 -144408601 + AluSg SINE Alu 1 251 -59 1048 236 15 30 chr11 6374952 6374970 -144408583 + L1ME3A LINE L1 5823 5840 -330 583 51 0 0 chr11 6374966 6375044 -144408509 + L1P LINE L1 4735 4812 -1334 * 252 137 78 0 chr11 6375049 6375100 -144408453 + AluSg SINE Alu 248 302 0 997 254 46 38 chr11 6375101 6375448 -144408105 + L1ME3A LINE L1 5817 6166 -4 2344 186 60 4 chr11 6375526 6375993 -144407560 + MLT1D LTR MaLR 13 505 0 187 262 0 0 chr11 6376026 6376068 -144407485 + L2 LINE L2 3230 3271 -1 225 0 0 0 chr11 6377835 6377860 -144405693 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 906 95 44 0 chr11 6377885 6378022 -144405531 - L1MA3 LINE L1 -18 6287 6145 489 273 128 43 chr11 6378156 6378548 -144405005 + L1ME4a LINE L1 5672 6096 -25 1052 181 46 3 chr11 6378686 6378889 -144404664 + MER20 DNA MER1_type 2 214 -5 914 201 11 11 chr11 6379654 6379833 -144403720 + MER66B LTR ERV1 1 179 -307 335 212 7 117 chr11 6379831 6379968 -144403585 + MER66A LTR ERV1 286 407 -71 * 9084 247 47 27 chr11 6380006 6383215 -144400338 + MER66-int LTR ERV1 1210 4225 -3531 1124 81 0 0 chr11 6383215 6383364 -144400189 - THE1B-int LTR MaLR -1431 149 1 2203 140 19 25 chr11 6383365 6383730 -144399823 - THE1B LTR MaLR -1 363 1 2363 93 0 3 chr11 6383781 6384082 -144399471 - AluY SINE Alu -11 300 1 21 0 0 0 chr11 6385314 6385335 -144398218 + AT_rich Low_complexity Low_complexity 1 21 0 858 275 16 0 chr11 6387290 6387478 -144396075 - MLT1E LTR MaLR -4 589 399 566 268 30 45 chr11 6387478 6387676 -144395877 + MLT1A1 LTR MaLR 2 196 -169 2291 226 83 10 chr11 6388284 6388877 -144394676 - MER92B LTR ERV1 0 636 1 315 318 81 38 chr11 6389750 6390011 -144393542 + L2 LINE L2 3029 3300 -13 2086 101 35 0 chr11 6390014 6390300 -144393253 + AluSq SINE Alu 1 296 -17 1083 266 51 4 chr11 6391270 6391647 -144391906 - L1ME3A LINE L1 -208 5962 5570 5077 113 10 0 chr11 6391686 6392370 -144391183 - LTR8 LTR ERV1 0 691 1 244 178 56 22 chr11 6392648 6392738 -144390815 + (TTATA)n Simple_repeat Simple_repeat 2 94 0 336 256 41 72 chr11 6392933 6393128 -144390425 - HAL1 LINE L1 -1166 1341 1153 2414 100 0 0 chr11 6393366 6393677 -144389876 - AluSx SINE Alu -1 311 1 214 227 120 0 chr11 6393793 6393868 -144389685 + MER5B DNA MER1_type 90 173 -5 2223 130 0 3 chr11 6394914 6395221 -144388332 + AluSq SINE Alu 1 306 -7 2144 114 0 3 chr11 6396333 6396630 -144386923 - AluSx SINE Alu -15 297 2 193 321 0 0 chr11 6397087 6397143 -144386410 - MIR SINE MIR -3 259 204 1912 212 62 58 chr11 6397234 6397753 -144385800 + MLT1E3 LTR MaLR 102 622 -2 1383 258 10 7 chr11 6397755 6398239 -144385314 + MLT1E3-int LTR MaLR 1 602 -769 389 313 60 6 chr11 6398437 6398619 -144384934 + MLT1E3-int LTR MaLR 696 887 -484 981 304 113 30 chr11 6399182 6400024 -144383529 + L2 LINE L2 2355 3308 -5 837 276 225 13 chr11 6402535 6403010 -144380543 + L2 LINE L2 2199 2774 -540 2351 86 3 0 chr11 6403030 6403320 -144380233 - AluY SINE Alu -20 291 1 331 368 0 0 chr11 6406646 6406782 -144376771 + CT-rich Low_complexity Low_complexity 1 136 0 802 199 42 0 chr11 6406936 6407102 -144376451 + MIR SINE MIR 88 260 -2 474 204 52 64 chr11 6407142 6407314 -144376239 - MLT1D LTR MaLR -275 230 61 951 303 132 29 chr11 6409818 6410818 -144372735 + L2 LINE L2 1944 3038 -234 1844 174 27 0 chr11 6411071 6411369 -144372184 - AluJb SINE Alu -6 306 1 390 179 74 0 chr11 6411381 6411476 -144372077 - MIR SINE MIR 0 262 161 301 239 43 22 chr11 6411475 6411567 -144371986 + MIR SINE MIR 91 184 -78 * 197 65 32 0 chr11 6411567 6411598 -144371955 + (TCTA)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr11 6415119 6415140 -144368413 + (TCC)n Simple_repeat Simple_repeat 2 22 0 732 159 18 0 chr11 6416258 6416371 -144367182 + FLAM_C SINE Alu 9 123 -20 3165 227 74 43 chr11 6416482 6416549 -144367004 - L1MEc LINE L1 -2683 3463 3400 1426 155 79 94 chr11 6416549 6416857 -144366696 + THE1C LTR MaLR 1 303 -72 2273 107 0 0 chr11 6416857 6417146 -144366407 - AluSq SINE Alu -24 289 1 1426 155 79 94 chr11 6417146 6417218 -144366335 + THE1C LTR MaLR 303 375 0 3165 227 74 43 chr11 6417218 6417301 -144366252 - L1MEc LINE L1 -2746 3400 3321 720 147 16 39 chr11 6417301 6417430 -144366123 - FLAM_A SINE Alu -7 126 1 2280 92 0 3 chr11 6417435 6417727 -144365826 - AluSc SINE Alu -18 291 1 3165 227 74 43 chr11 6417727 6418788 -144364765 - L1MEc LINE L1 -2828 3318 2234 454 286 95 29 chr11 6419067 6419308 -144364245 + MIR SINE MIR 6 262 0 292 338 186 29 chr11 6419558 6419869 -144363684 - L2 LINE L2 -9 3263 2904 415 303 154 8 chr11 6419972 6420328 -144363225 - L2 LINE L2 -752 2562 2155 603 269 59 65 chr11 6421971 6422510 -144361043 - L2 LINE L2 -1094 2220 1685 233 327 125 37 chr11 6422537 6422864 -144360689 - L2 LINE L2 -1 3271 2916 445 345 120 36 chr11 6423120 6423638 -144359915 - L2 LINE L2 -715 2599 2009 2225 99 14 3 chr11 6423638 6423932 -144359621 + AluSg SINE Alu 1 297 -13 445 345 120 36 chr11 6423932 6424097 -144359456 - L2 LINE L2 -1305 2009 1859 306 297 123 13 chr11 6424171 6424326 -144359227 - MLT1K LTR MaLR -19 569 398 398 196 39 10 chr11 6424369 6424471 -144359082 - L1MD2 LINE L1 0 6359 6255 237 65 0 0 chr11 6424480 6424511 -144359042 + (TTA)n Simple_repeat Simple_repeat 2 32 0 849 211 0 6 chr11 6424514 6424670 -144358883 - AluSc SINE Alu -30 279 125 1436 173 7 83 chr11 6424677 6424977 -144358576 - AluJb SINE Alu -35 277 1 754 168 0 23 chr11 6424986 6425117 -144358436 - AluJo SINE Alu -178 134 7 1969 169 92 10 chr11 6425124 6425515 -144358038 - L1MD3 LINE L1 -157 7838 7416 403 171 89 24 chr11 6425516 6425600 -144357953 - MLT1F1 LTR MaLR -442 125 45 196 316 0 26 chr11 6425964 6426040 -144357513 + L2 LINE L2 2997 3070 -243 24 0 0 0 chr11 6427548 6427572 -144355981 + AT_rich Low_complexity Low_complexity 1 24 0 31 0 0 0 chr11 6428364 6428395 -144355158 + AT_rich Low_complexity Low_complexity 1 31 0 3709 155 23 84 chr11 6428612 6429439 -144354114 - L1MB8 LINE L1 -5 6355 5582 2184 132 3 7 chr11 6429439 6429749 -144353804 - AluSx SINE Alu -2 310 2 3709 155 23 84 chr11 6429749 6429794 -144353759 - L1MB8 LINE L1 -778 5582 5536 750 175 134 31 chr11 6429776 6429999 -144353554 - L1MCb LINE L1 -4914 1650 1405 * 716 186 20 17 chr11 6430001 6430285 -144353268 + CT-rich Low_complexity Low_complexity 1 284 0 3886 174 18 45 chr11 6430286 6431425 -144352128 - L1MCb LINE L1 -4849 1196 335 2258 176 76 44 chr11 6431452 6431534 -144352019 - L1MB8 LINE L1 -780 5548 5470 2147 134 0 7 chr11 6431534 6431840 -144351713 - AluSx SINE Alu -8 304 1 2258 176 76 44 chr11 6431840 6432348 -144351205 - L1MB8 LINE L1 -858 5470 4939 500 260 40 121 chr11 6432453 6432717 -144350836 + MLT1E-int LTR MaLR 1074 1309 -62 2042 138 65 6 chr11 6432717 6433071 -144350482 - THE1C LTR MaLR 0 375 1 500 260 40 121 chr11 6433071 6433129 -144350424 + MLT1E-int LTR MaLR 1309 1370 -1 2020 247 50 60 chr11 6433130 6433537 -144350016 + MLT1E LTR MaLR 1 402 -191 1163 219 75 64 chr11 6433537 6433898 -144349655 - MLT1A1 LTR MaLR 0 365 1 2020 247 50 60 chr11 6433898 6434089 -144349464 + MLT1E LTR MaLR 402 593 0 21086 30 3 0 chr11 6434636 6437894 -144345659 - L1PA4 LINE L1 -1 6154 2890 2287 120 0 0 chr11 6438169 6438478 -144345075 - AluSx SINE Alu -3 309 1 748 218 92 86 chr11 6439434 6439760 -144343793 + MER63B DNA MER1_type 6 333 -103 236 57 0 0 chr11 6439762 6439797 -144343756 - L1MB5 LINE L1 -8 6166 6132 340 194 0 0 chr11 6439831 6439898 -144343655 + L1M4 LINE L1 5007 5073 -1073 6293 218 37 35 chr11 6439913 6440641 -144342912 - L1MB8 LINE L1 -2977 3351 2626 2267 167 44 12 chr11 6440641 6441054 -144342499 + MSTB LTR MaLR 1 426 0 6293 218 37 35 chr11 6441054 6442394 -144341159 - L1MB8 LINE L1 -3702 2626 1308 1700 183 3 7 chr11 6442394 6442689 -144340864 - AluJo SINE Alu -14 298 5 6293 218 37 35 chr11 6442689 6443998 -144339555 - L1MB8 LINE L1 -5020 1308 2 306 306 48 7 chr11 6444004 6444151 -144339402 - L1MEc LINE L1 -4734 1662 1510 902 217 135 70 chr11 6444582 6444923 -144338630 - MLT1A1 LTR MaLR 0 365 3 22 0 0 0 chr11 6445529 6445551 -144338002 + AT_rich Low_complexity Low_complexity 1 22 0 3051 215 37 37 chr11 6446338 6447156 -144336397 - L1M4 LINE L1 -1712 4434 3617 2214 122 26 0 chr11 6447756 6447878 -144335675 + AluSx SINE Alu 1 118 -194 282 29 0 0 chr11 6447878 6447913 -144335640 + (CA)n Simple_repeat Simple_repeat 2 36 0 2214 122 26 0 chr11 6447913 6448094 -144335459 + AluSx SINE Alu 118 312 0 213 39 0 0 chr11 6448983 6449009 -144334544 + (T)n Simple_repeat Simple_repeat 1 26 0 186 300 40 0 chr11 6449621 6449671 -144333882 - L2 LINE L2 -98 3174 3123 498 355 80 60 chr11 6449756 6450646 -144332907 + L2 LINE L2 2066 2973 -341 261 314 89 8 chr11 6451057 6451233 -144332320 + L2 LINE L2 2146 2375 -939 207 114 0 0 chr11 6451523 6451558 -144331995 + (TG)n Simple_repeat Simple_repeat 2 36 0 1573 101 0 0 chr11 6451727 6451926 -144331627 + AluSq SINE Alu 1 199 -114 221 345 97 0 chr11 6452190 6452303 -144331250 - L2 LINE L2 0 3272 3149 4551 161 43 40 chr11 6452367 6452477 -144331076 + L1MA9 LINE L1 4355 4463 -1849 335 174 47 23 chr11 6452477 6452563 -144330990 + L1PA12 LINE L1 6081 6168 0 4551 161 43 40 chr11 6452563 6452994 -144330559 + L1MA9 LINE L1 4463 4891 -1421 1704 175 7 14 chr11 6452994 6453291 -144330262 - AluJb SINE Alu -13 299 5 4551 161 43 40 chr11 6453291 6454486 -144329067 + L1MA9 LINE L1 4891 6079 -233 323 353 131 31 chr11 6454889 6455363 -144328190 - L2 LINE L2 -6 3266 2743 681 264 77 4 chr11 6455378 6455613 -144327940 - MER112 DNA MER1_type -7 253 2 2625 18 0 0 chr11 6455778 6456063 -144327490 - L1PA2 LINE L1 0 6155 5871 187 208 113 0 chr11 6456649 6456702 -144326851 - L2 LINE L2 -672 2642 2584 2411 79 0 0 chr11 6457053 6457345 -144326208 - AluY SINE Alu -18 293 2 27 29 0 0 chr11 6458954 6458988 -144324565 + AT_rich Low_complexity Low_complexity 1 34 0 335 272 183 27 chr11 6460802 6461026 -144322527 - MER97c DNA MER1_type? -65 1025 767 896 111 11 99 chr11 6461081 6461262 -144322291 + MLT1C LTR MaLR 1 165 -302 209 200 0 0 chr11 6461270 6461310 -144322243 + (CATA)n Simple_repeat Simple_repeat 3 42 0 2466 70 3 0 chr11 6461310 6461611 -144321942 + AluSx SINE Alu 1 302 -10 1034 242 25 39 chr11 6461660 6461945 -144321608 + MLT1C LTR MaLR 187 467 0 2395 68 0 10 chr11 6462275 6462568 -144320985 - AluSq SINE Alu -23 290 1 551 195 18 26 chr11 6463609 6463722 -144319831 - MER97a DNA MER1_type? -390 504 393 990 95 0 0 chr11 6463736 6463862 -144319691 + LTR8 LTR ERV1 566 691 0 34778 103 86 73 chr11 6463862 6465088 -144318465 + HUERS-P1 LTR ERV1 1 1210 -5053 405 102 0 0 chr11 6465088 6465147 -144318406 + (TG)n Simple_repeat Simple_repeat 2 60 0 34778 103 86 73 chr11 6465147 6466884 -144316669 + HUERS-P1 LTR ERV1 1210 2924 -3339 2342 100 0 0 chr11 6466884 6467184 -144316369 + AluY SINE Alu 1 300 -11 34778 103 86 73 chr11 6467184 6467656 -144315897 + HUERS-P1 LTR ERV1 2924 3389 -2874 273 29 0 0 chr11 6467656 6467690 -144315863 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2902 16 0 0 chr11 6467690 6467997 -144315556 - SVA Other Other -19 1367 1061 34778 103 86 73 chr11 6467997 6470147 -144313406 + HUERS-P1 LTR ERV1 3389 5808 -455 1101 15 8 8 chr11 6470147 6470281 -144313272 + AluY SINE Alu 174 307 -4 34778 103 86 73 chr11 6470281 6470743 -144312810 + HUERS-P1 LTR ERV1 5808 6263 0 4245 96 5 17 chr11 6470743 6471336 -144312217 + LTR8 LTR ERV1 1 586 -105 258 105 0 0 chr11 6471337 6471375 -144312178 + (A)n Simple_repeat Simple_repeat 1 38 0 1365 211 33 15 chr11 6471397 6471734 -144311819 - MER97c DNA MER1_type? -747 343 1 1993 157 0 0 chr11 6472914 6473208 -144310345 - AluJo SINE Alu -18 294 1 540 202 118 45 chr11 6473632 6473810 -144309743 - Charlie4 DNA MER1_type -1 1960 1770 676 188 38 0 chr11 6473829 6473962 -144309591 - Charlie4 DNA MER1_type -1807 154 17 2346 103 3 6 chr11 6474132 6474444 -144309109 - AluSq SINE Alu -2 311 1 540 332 78 27 chr11 6474634 6475009 -144308544 - L2 LINE L2 -192 3080 2699 1165 174 0 54 chr11 6475093 6475317 -144308236 + AluJo SINE Alu 1 212 -100 189 0 0 0 chr11 6475329 6475350 -144308203 + (A)n Simple_repeat Simple_repeat 1 21 0 1770 118 0 0 chr11 6475350 6475596 -144307957 + Tigger3(Golem) DNA MER2_type 2783 3028 -1 319 273 55 27 chr11 6475597 6475707 -144307846 - L2 LINE L2 -617 2697 2585 429 259 19 14 chr11 6475756 6475916 -144307637 - LTR33 LTR ERVL -8 513 319 670 250 133 0 chr11 6475970 6476158 -144307395 - LTR33 LTR ERVL -308 213 1 1974 95 12 0 chr11 6476178 6476430 -144307123 + AluSg SINE Alu 1 255 -55 200 204 0 23 chr11 6476436 6476480 -144307073 - L2 LINE L2 -80 3233 3191 2296 269 60 95 chr11 6476488 6477367 -144306186 + Charlie2b DNA MER1_type 7 826 -1956 2152 125 0 13 chr11 6477367 6477679 -144305874 - AluSx SINE Alu -4 308 1 2296 269 60 95 chr11 6477679 6478109 -144305444 + Charlie2b DNA MER1_type 826 1270 -1512 548 229 41 46 chr11 6478103 6478321 -144305232 + Charlie2b DNA MER1_type 2077 2293 -489 * 2805 245 65 26 chr11 6478386 6479287 -144304266 + L1ME3A LINE L1 5238 6170 0 2059 165 75 71 chr11 6479357 6479848 -144303705 + MLT1D LTR MaLR 13 505 0 230 322 0 0 chr11 6479862 6479921 -144303632 + L2 LINE L2 3211 3269 -3 186 322 122 0 chr11 6481316 6481431 -144302122 - L2 LINE L2 -5 3267 3139 921 147 96 189 chr11 6481438 6481771 -144301782 - AluSq SINE Alu 0 303 2 1474 77 6 0 chr11 6481918 6482099 -144301454 - AluSg/x SINE Alu -21 289 108 2383 89 0 0 chr11 6482280 6482573 -144300980 + AluSx SINE Alu 1 293 -19 379 216 166 0 chr11 6482674 6482813 -144300740 + HAL1b LINE L1 1186 1347 -1 966 214 68 19 chr11 6482893 6483099 -144300454 + MER20 DNA MER1_type 1 216 -3 1003 305 89 10 chr11 6484055 6484471 -144299082 - LTR16A LTR ERVL -1 449 1 2219 103 20 3 chr11 6484864 6485165 -144298388 + AluSx SINE Alu 1 306 -6 402 262 179 24 chr11 6485347 6485515 -144298038 - MIR SINE MIR -32 230 37 413 109 29 196 chr11 6485602 6485682 -144297871 - L1MA7 LINE L1 -260 6031 5982 2079 130 7 0 chr11 6485682 6485990 -144297563 - AluSx SINE Alu -2 310 1 413 109 29 196 chr11 6485990 6486047 -144297506 - L1MA7 LINE L1 -309 5982 5917 2418 71 0 10 chr11 6486447 6486742 -144296811 + AluSg SINE Alu 1 292 -18 2367 128 9 70 chr11 6487178 6487235 -144296318 - L1MA5 LINE L1 -7 6293 6234 2193 99 26 118 chr11 6487235 6487651 -144295902 - L1PA12 LINE L1 -7 6161 5784 2367 128 9 70 chr11 6487651 6487996 -144295557 - L1MA5 LINE L1 -66 6234 5918 2180 121 0 10 chr11 6487996 6488303 -144295250 - AluSx SINE Alu -8 304 1 2367 128 9 70 chr11 6488303 6488344 -144295209 - L1MA5 LINE L1 -382 5918 5876 691 93 39 62 chr11 6488418 6488547 -144295006 + LTR13 LTR ERVK 1 126 -881 * 7729 58 7 3 chr11 6488529 6489473 -144294080 + LTR13 LTR ERVK 60 1007 0 2125 126 3 0 chr11 6490168 6490470 -144293083 - AluSx SINE Alu -9 303 1 1528 126 40 0 chr11 6490975 6491197 -144292356 + AluSx SINE Alu 1 231 -81 22 0 0 0 chr11 6491320 6491342 -144292211 + AT_rich Low_complexity Low_complexity 1 22 0 271 238 105 29 chr11 6498210 6498315 -144285238 - MIR SINE MIR -114 148 36 218 333 14 14 chr11 6498371 6498443 -144285110 + L2 LINE L2 352 423 -2891 383 245 128 0 chr11 6498726 6498828 -144284725 - L2 LINE L2 0 3313 3199 227 356 52 17 chr11 6498832 6498947 -144284606 - L2 LINE L2 -15 3257 3139 800 216 167 39 chr11 6499123 6499405 -144284148 - L2 LINE L2 0 3313 2996 412 147 13 0 chr11 6500398 6500473 -144283080 - LTR33A LTR ERVL -1 522 447 2051 135 6 25 chr11 6500494 6500812 -144282741 + AluSx SINE Alu 1 312 0 380 219 76 90 chr11 6500812 6500916 -144282637 - LTR50 LTR ERVL -184 611 507 1780 178 7 0 chr11 6500916 6501220 -144282333 + AluJo SINE Alu 1 306 -6 380 219 76 90 chr11 6501220 6501295 -144282258 - LTR50 LTR ERVL -288 507 349 2248 120 3 0 chr11 6501298 6501598 -144281955 + AluSp SINE Alu 1 301 -12 650 266 145 0 chr11 6501601 6501842 -144281711 - LTR50 LTR ERVL -517 278 3 699 289 69 24 chr11 6501965 6502211 -144281342 + MIR SINE MIR 4 260 -2 1624 178 45 20 chr11 6502270 6502562 -144280991 + AluJb SINE Alu 1 299 -13 341 291 58 0 chr11 6502620 6502723 -144280830 + L3 LINE CR1 1270 1378 -199 309 298 0 43 chr11 6502922 6503063 -144280490 + GA-rich Low_complexity Low_complexity 1 135 0 2058 128 3 3 chr11 6503480 6503811 -144279742 - AluSx SINE Alu 0 312 1 25 0 0 0 chr11 6505787 6505812 -144277741 + AT_rich Low_complexity Low_complexity 1 25 0 300 224 0 0 chr11 6506582 6506640 -144276913 - L2 LINE L2 -1 3312 3255 28 29 0 0 chr11 6509400 6509435 -144274118 + AT_rich Low_complexity Low_complexity 1 35 0 251 278 0 14 chr11 6509477 6509549 -144274004 + L1ME LINE L1 5703 5773 -397 1848 236 52 29 chr11 6509833 6510355 -144273198 - MER87 LTR ERV1 -7 534 1 5100 222 28 42 chr11 6510851 6511344 -144272209 - L1MA8 LINE L1 -5 6286 5787 225 0 0 0 chr11 6511344 6511369 -144272184 + (TG)n Simple_repeat Simple_repeat 2 26 0 5100 222 28 42 chr11 6511369 6511385 -144272168 - L1MA8 LINE L1 -504 5787 5772 225 0 0 0 chr11 6511385 6511410 -144272143 + (CA)n Simple_repeat Simple_repeat 2 26 0 5100 222 28 42 chr11 6511410 6511873 -144271680 - L1MA8 LINE L1 -519 5772 5304 2423 77 3 0 chr11 6511873 6512173 -144271380 - AluY SINE Alu -10 301 1 5100 222 28 42 chr11 6512173 6513955 -144269598 - L1MA8 LINE L1 -987 5304 3581 305 321 88 38 chr11 6514119 6514381 -144269172 - L1ME LINE L1 -454 5667 5393 23 0 0 0 chr11 6514732 6514755 -144268798 + AT_rich Low_complexity Low_complexity 1 23 0 246 274 19 9 chr11 6514933 6515039 -144268514 - L1ME LINE L1 -1525 4621 4515 738 301 141 19 chr11 6515061 6515600 -144267953 + L2 LINE L2 1330 1934 -1380 243 88 0 0 chr11 6515600 6515634 -144267919 + (TA)n Simple_repeat Simple_repeat 2 35 0 962 17 8 0 chr11 6515637 6515756 -144267797 - L1PA5 LINE L1 0 6154 6035 425 265 85 11 chr11 6516412 6516601 -144266952 - Charlie7 DNA MER1_type -607 2005 1803 2355 190 81 26 chr11 6516606 6517069 -144266484 - L1MD1 LINE L1 -179 6063 5543 890 103 314 0 chr11 6517069 6517244 -144266309 - MER30 DNA MER1_type 0 230 1 2355 190 81 26 chr11 6517244 6517436 -144266117 - L1MD1 LINE L1 -699 5543 5363 195 42 0 0 chr11 6517444 6517468 -144266085 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 252 315 22 16 chr11 6517967 6518151 -144265402 - AluJb SINE Alu -10 292 108 726 211 77 35 chr11 6518446 6518520 -144265033 - L1MB7 LINE L1 -304 5880 5811 1811 180 0 0 chr11 6518520 6518835 -144264718 - AluSx SINE Alu 0 315 1 726 211 77 35 chr11 6518835 6519019 -144264534 - L1MB7 LINE L1 -373 5811 5610 1274 199 15 7 chr11 6519023 6519374 -144264179 - L1MB7 LINE L1 -714 5470 5118 495 294 121 9 chr11 6521411 6521642 -144261911 - MIR SINE MIR -1 261 5 1440 201 33 23 chr11 6521954 6522067 -144261486 + AluJo SINE Alu 2 112 -200 405 0 0 0 chr11 6522067 6522112 -144261441 + (CA)n Simple_repeat Simple_repeat 2 46 0 1440 201 33 23 chr11 6522112 6522297 -144261256 + AluJo SINE Alu 112 303 -9 489 253 39 43 chr11 6523192 6523425 -144260128 - L1M2 LINE L1 -646 5666 5435 1134 124 0 0 chr11 6523452 6523613 -144259940 - AluSq SINE Alu -24 289 129 599 320 84 35 chr11 6523644 6524153 -144259400 - L2 LINE L2 -1076 2238 1705 638 133 0 0 chr11 6524155 6524292 -144259261 - AluSg/x SINE Alu 0 330 194 237 333 135 0 chr11 6524297 6524423 -144259130 - L2 LINE L2 -1814 1500 1358 507 239 23 0 chr11 6525653 6525783 -144257770 - FLAM_C SINE Alu -10 133 1 316 310 54 87 chr11 6525811 6526108 -144257445 - L2 LINE L2 -396 2918 2632 2313 143 105 16 chr11 6526108 6526556 -144256997 + LTR45B LTR ERV1 2 489 0 316 310 54 87 chr11 6526556 6526590 -144256963 - L2 LINE L2 -682 2632 2598 194 340 112 15 chr11 6526638 6526835 -144256718 - L2 LINE L2 -1105 2209 1994 236 113 57 19 chr11 6526992 6527045 -144256508 - MIR3 SINE MIR -7 201 147 432 0 0 0 chr11 6527654 6527702 -144255851 + (TG)n Simple_repeat Simple_repeat 2 49 0 1545 151 0 99 chr11 6527703 6528015 -144255538 - AluJb SINE Alu -27 285 5 270 297 61 24 chr11 6528163 6528328 -144255225 - MIR SINE MIR -73 189 19 189 352 11 11 chr11 6533153 6533241 -144250312 + L2 LINE L2 2228 2315 -999 2373 93 0 0 chr11 6533890 6534191 -144249362 - AluY SINE Alu -10 301 1 23 0 0 0 chr11 6534406 6534429 -144249124 + AT_rich Low_complexity Low_complexity 1 23 0 197 264 69 69 chr11 6534447 6534534 -144249019 - MIR SINE MIR -158 104 18 204 136 0 68 chr11 6534768 6534812 -144248741 + MIR SINE MIR 222 262 0 3216 70 5 0 chr11 6535328 6535768 -144247785 - THE1B-int LTR MaLR -1138 442 1 1039 131 15 50 chr11 6535768 6535966 -144247587 - THE1B LTR MaLR 0 364 174 731 33 0 0 chr11 6535966 6536057 -144247496 - AluYb8 SINE Alu -2 316 226 4933 145 10 6 chr11 6536251 6537178 -144246375 + L1PA12 LINE L1 5166 6098 -70 2194 113 0 0 chr11 6537233 6537516 -144246037 + AluSc SINE Alu 1 283 -26 398 322 27 14 chr11 6537840 6537986 -144245567 + L2 LINE L2 3154 3301 -12 329 316 42 53 chr11 6538011 6538201 -144245352 - MIR SINE MIR -67 195 8 198 0 0 0 chr11 6538677 6538699 -144244854 + (T)n Simple_repeat Simple_repeat 1 22 0 1444 106 55 0 chr11 6539174 6539392 -144244161 - MER30 DNA MER1_type 0 230 1 196 305 103 46 chr11 6539932 6540106 -144243447 - L2 LINE L2 -251 3021 2838 263 91 0 45 chr11 6540408 6540452 -144243101 - THE1B LTR MaLR -322 42 1 1965 75 33 23 chr11 6540462 6540769 -144242784 - THE1B-int LTR MaLR -11 1569 1260 803 170 61 31 chr11 6540778 6540992 -144242561 - THE1C LTR MaLR -191 184 1 2393 75 7 0 chr11 6541052 6541345 -144242208 + AluY SINE Alu 1 295 -16 291 347 155 19 chr11 6541351 6541622 -144241931 - L2 LINE L2 -626 2688 2381 12776 72 7 1 chr11 6541784 6543546 -144240007 + PABL_A-int LTR ERV1 3243 5015 0 4537 68 39 45 chr11 6543546 6543805 -144239748 + PABL_A LTR ERV1 1 260 -400 1942 129 0 18 chr11 6543805 6544136 -144239417 - AluY SINE Alu 0 326 1 4537 68 39 45 chr11 6544136 6544538 -144239015 + PABL_A LTR ERV1 260 660 0 312 349 85 25 chr11 6544539 6544774 -144238779 - L2 LINE L2 -468 2846 2598 197 195 0 0 chr11 6545290 6545331 -144238222 + MIR3 SINE MIR 161 201 -7 321 297 45 74 chr11 6545719 6545988 -144237565 + L2 LINE L2 2598 2858 -456 206 333 143 9 chr11 6546099 6546204 -144237349 + MIR SINE MIR 27 145 -63 431 345 110 44 chr11 6546985 6547304 -144236249 + L2 LINE L2 2933 3272 0 6376 79 15 30 chr11 6547820 6548755 -144234798 - THE1B-int LTR MaLR -659 921 1 2107 121 53 31 chr11 6548755 6549111 -144234442 - THE1B LTR MaLR 0 364 1 2331 173 32 12 chr11 6549111 6549607 -144233946 - L1MC3 LINE L1 -575 7210 6705 5384 137 9 6 chr11 6549755 6550683 -144232870 + L1PA12 LINE L1 5166 6098 -70 2304 102 0 0 chr11 6550739 6551033 -144232520 + AluSc SINE Alu 1 294 -15 380 329 27 14 chr11 6551349 6551495 -144232058 + L2 LINE L2 3154 3301 -12 334 316 42 53 chr11 6551520 6551710 -144231843 - MIR SINE MIR -67 195 8 234 0 0 0 chr11 6552181 6552207 -144231346 + (T)n Simple_repeat Simple_repeat 1 26 0 1430 110 55 0 chr11 6552683 6552901 -144230652 - MER30 DNA MER1_type 0 230 1 185 305 103 46 chr11 6553441 6553615 -144229938 - L2 LINE L2 -251 3021 2838 22 0 0 0 chr11 6553664 6553686 -144229867 + AT_rich Low_complexity Low_complexity 1 22 0 348 179 26 0 chr11 6553739 6553856 -144229697 + (TA)n Simple_repeat Simple_repeat 1 120 0 200 175 29 10 chr11 6553885 6553988 -144229565 + (TA)n Simple_repeat Simple_repeat 2 106 0 345 209 146 32 chr11 6553997 6554155 -144229398 - L1ME4a LINE L1 -23 6098 5923 710 253 93 15 chr11 6554345 6554677 -144228876 - Charlie7 DNA MER1_type -452 2160 1803 2546 190 81 26 chr11 6554682 6555145 -144228408 - L1MD1 LINE L1 -179 6063 5543 900 97 314 0 chr11 6555145 6555320 -144228233 - MER30 DNA MER1_type 0 230 1 2546 190 81 26 chr11 6555320 6555512 -144228041 - L1MD1 LINE L1 -699 5543 5363 195 42 0 0 chr11 6555520 6555544 -144228009 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 302 306 79 104 chr11 6555549 6555990 -144227563 - HAL1 LINE L1 -1046 1461 1032 1956 139 0 0 chr11 6556033 6556334 -144227219 - AluSx SINE Alu 0 301 1 1895 166 0 0 chr11 6556571 6556872 -144226681 - AluJb SINE Alu -11 301 1 305 291 92 28 chr11 6556966 6557107 -144226446 - HAL1b LINE L1 -869 479 330 254 282 86 61 chr11 6557213 6557376 -144226177 + L2 LINE L2 2621 2787 -527 31 26 0 0 chr11 6557472 6557510 -144226043 + AT_rich Low_complexity Low_complexity 1 38 0 190 241 35 0 chr11 6557927 6557985 -144225568 + MIR SINE MIR 99 158 -104 2539 40 3 7 chr11 6559766 6560069 -144223484 - AluY SINE Alu -9 302 1 633 327 19 34 chr11 6560612 6560933 -144222620 - L1ME4a LINE L1 -2077 5731 5416 1599 177 14 31 chr11 6561308 6561602 -144221951 - AluJo SINE Alu -15 297 9 1627 154 52 33 chr11 6561627 6561933 -144221620 - AluSx SINE Alu 0 312 1 186 344 135 50 chr11 6562334 6562889 -144220664 - L2 LINE L2 -348 2966 2365 225 293 187 0 chr11 6563064 6563187 -144220366 - L2 LINE L2 0 3313 3168 632 281 24 0 chr11 6563435 6563602 -144219951 + MIR SINE MIR 92 262 0 449 293 117 59 chr11 6563716 6563900 -144219653 + L2 LINE L2 2949 3121 -192 189 0 0 0 chr11 6563900 6563921 -144219632 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 2110 99 7 0 chr11 6563921 6564205 -144219348 - AluSp SINE Alu -27 286 1 449 293 117 59 chr11 6564205 6564360 -144219193 + L2 LINE L2 3120 3309 -4 184 371 0 0 chr11 6564460 6564522 -144219031 - MIR SINE MIR -1 261 200 7235 36 1 21 chr11 6566591 6568033 -144215520 + L1PA5 LINE L1 4722 6145 -9 22 0 0 0 chr11 6568316 6568338 -144215215 + AT_rich Low_complexity Low_complexity 1 22 0 472 292 15 22 chr11 6568411 6568548 -144215005 - L2 LINE L2 -9 3304 3169 2165 210 12 37 chr11 6569328 6569843 -144213710 + MLT1D LTR MaLR 4 505 0 465 294 195 43 chr11 6569932 6570237 -144213316 + L2 LINE L2 1390 1647 -1667 782 137 37 12 chr11 6570237 6570398 -144213155 - L1MB8 LINE L1 0 6178 6014 465 294 195 43 chr11 6570398 6570693 -144212860 + L2 LINE L2 1647 2081 -1233 518 148 31 39 chr11 6570784 6570912 -144212641 - L1MA10 LINE L1 -1 6333 6207 349 244 24 85 chr11 6570935 6571099 -144212454 + L2 LINE L2 2255 2408 -906 6824 177 14 13 chr11 6571530 6572896 -144210657 - MSTB-int LTR MaLR -219 1361 1 794 164 22 0 chr11 6572896 6573030 -144210523 - MSTB LTR MaLR -2 424 288 23 54 0 0 chr11 6575756 6575793 -144207760 + AT_rich Low_complexity Low_complexity 1 37 0 1809 166 10 0 chr11 6577708 6577998 -144205555 - AluSx SINE Alu -17 295 3 910 132 0 22 chr11 6578107 6578243 -144205310 + FLAM_C SINE Alu 1 133 0 356 371 65 12 chr11 6578825 6579146 -144204407 + HAL1b LINE L1 95 432 -916 2306 87 3 0 chr11 6579960 6580260 -144203293 + AluY SINE Alu 1 301 -10 225 295 117 38 chr11 6580598 6580940 -144202613 + L1MB1 LINE L1 3590 3958 -2188 2100 128 0 19 chr11 6581296 6581608 -144201945 + AluSx SINE Alu 2 307 -5 25 65 0 0 chr11 6581890 6581936 -144201617 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr11 6581993 6582022 -144201531 + AT_rich Low_complexity Low_complexity 1 29 0 206 227 0 0 chr11 6582328 6582372 -144201181 + A-rich Low_complexity Low_complexity 4 47 0 34 65 0 0 chr11 6582383 6582445 -144201108 + AT_rich Low_complexity Low_complexity 1 62 0 4524 175 27 31 chr11 6582515 6582765 -144200788 + L1MB1 LINE L1 4778 5028 -1140 1805 149 4 0 chr11 6582765 6583040 -144200513 + AluSp SINE Alu 30 305 -8 4524 175 27 31 chr11 6583040 6584179 -144199374 + L1MB1 LINE L1 5028 6161 -7 22 0 0 0 chr11 6584587 6584609 -144198944 + AT_rich Low_complexity Low_complexity 1 22 0 195 308 6 141 chr11 6584685 6584841 -144198712 - MIR SINE MIR -79 183 49 492 195 11 0 chr11 6585028 6585115 -144198438 - MER58B DNA MER1_type 0 341 254 180 0 0 0 chr11 6585142 6585162 -144198391 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 773 237 59 23 chr11 6585221 6585440 -144198113 - MER58B DNA MER1_type -114 227 1 181 327 158 0 chr11 6585636 6585737 -144197816 + L2 LINE L2 3197 3313 0 2147 107 4 0 chr11 6585829 6586139 -144197414 + AluSx SINE Alu 1 311 0 252 292 63 69 chr11 6587366 6587539 -144196014 + MIR SINE MIR 11 183 -79 573 320 63 5 chr11 6587644 6587866 -144195687 - L2 LINE L2 -1 3312 3078 253 241 13 25 chr11 6588087 6588166 -144195387 + L1MC/D LINE L1 5692 5769 -2039 386 307 76 43 chr11 6588719 6589299 -144194254 - LTR57-int LTR ERVL -2560 2783 2225 261 330 41 0 chr11 6589312 6589409 -144194144 - LTR57-int LTR ERVL -3276 2067 1967 1741 194 32 55 chr11 6589410 6589844 -144193709 - LTR47B LTR ERVL -19 424 1 460 303 98 57 chr11 6590379 6590746 -144192807 + L2 LINE L2 2877 3258 -55 203 349 46 46 chr11 6590769 6590921 -144192632 - L2 LINE L2 -654 2660 2509 2262 101 0 0 chr11 6590929 6591217 -144192336 + AluSx SINE Alu 13 300 -12 2448 80 0 0 chr11 6591793 6592094 -144191459 + AluY SINE Alu 1 301 -10 183 331 57 38 chr11 6592743 6592900 -144190653 - L2 LINE L2 -999 2315 2156 197 182 0 68 chr11 6593099 6593143 -144190410 - MIR SINE MIR 0 262 222 192 287 58 58 chr11 6593377 6593464 -144190089 + MIR SINE MIR 18 104 -158 23 0 0 0 chr11 6593482 6593505 -144190048 + AT_rich Low_complexity Low_complexity 1 23 0 2375 89 0 3 chr11 6593720 6594022 -144189531 + AluSg SINE Alu 1 301 -9 208 173 40 40 chr11 6594056 6594131 -144189422 + (TTATA)n Simple_repeat Simple_repeat 1 75 0 1575 165 6 84 chr11 6594290 6594624 -144188929 - AluJo SINE Alu -4 308 1 395 300 47 88 chr11 6594664 6594949 -144188604 - L2 LINE L2 -410 2904 2632 2334 145 102 16 chr11 6594949 6595398 -144188155 + LTR45B LTR ERV1 2 489 0 395 300 47 88 chr11 6595398 6595432 -144188121 - L2 LINE L2 -682 2632 2598 208 340 112 15 chr11 6595480 6595677 -144187876 - L2 LINE L2 -1105 2209 1994 231 113 57 19 chr11 6595834 6595887 -144187666 - MIR3 SINE MIR -7 201 147 423 0 0 0 chr11 6596498 6596545 -144187008 + (TG)n Simple_repeat Simple_repeat 2 48 0 1515 157 0 99 chr11 6596546 6596858 -144186695 - AluJb SINE Alu -27 285 5 568 281 51 6 chr11 6597005 6597183 -144186370 - MIR SINE MIR -73 189 4 485 325 102 11 chr11 6597610 6597884 -144185669 + L2 LINE L2 2570 2868 -446 1745 232 30 48 chr11 6597898 6598563 -144184990 - L1M4 LINE L1 -2468 3678 3026 4819 180 49 5 chr11 6598587 6599062 -144184491 - L1MA7 LINE L1 -22 6269 5817 1829 171 44 21 chr11 6599062 6599402 -144184151 - MER7A DNA MER2_type 0 346 1 4819 180 49 5 chr11 6599402 6600529 -144183024 - L1MA7 LINE L1 -474 5817 4590 1186 198 90 0 chr11 6600529 6600797 -144182756 - MSTB1 LTR MaLR -140 292 1 1821 160 57 19 chr11 6600797 6601216 -144182337 - L1MA7 LINE L1 -1707 4439 4005 2422 173 6 35 chr11 6601219 6601700 -144181853 - MER52A LTR ERV1 0 1755 1289 4004 167 118 156 chr11 6601947 6602612 -144180941 - L1 LINE L1 -863 5283 4594 912 207 119 0 chr11 6602612 6602873 -144180680 - MSTB1 LTR MaLR -140 292 1 4004 167 118 156 chr11 6602873 6603296 -144180257 - L1 LINE L1 -1552 4594 4157 8214 165 112 23 chr11 6603296 6604908 -144178645 - MER52A LTR ERV1 0 1755 1 4004 167 118 156 chr11 6604908 6605435 -144178118 - L1 LINE L1 -1989 4157 3478 839 244 32 8 chr11 6605612 6605862 -144177691 - L1M4 LINE L1 -6256 286 31 367 311 73 23 chr11 6606032 6606251 -144177302 + MIR SINE MIR 33 262 0 2626 40 0 3 chr11 6606420 6606723 -144176830 - AluY SINE Alu -9 302 1 1194 151 8 40 chr11 6606989 6607061 -144176492 + L1MA8 LINE L1 6032 6105 -186 1947 172 52 41 chr11 6607061 6607480 -144176073 - MSTB LTR MaLR 0 426 3 1194 151 8 40 chr11 6607480 6607658 -144175895 + L1MA8 LINE L1 6105 6274 -17 2282 101 0 16 chr11 6607682 6607988 -144175565 + AluSg SINE Alu 1 301 -9 552 122 0 11 chr11 6607988 6608078 -144175475 + L1MB3 LINE L1 6055 6143 -40 290 177 32 0 chr11 6608084 6608146 -144175407 + L1 LINE L1 3816 3879 -2267 332 238 148 8 chr11 6608200 6608322 -144175231 + LTR37B LTR ERV1 330 468 0 21 0 0 0 chr11 6608374 6608395 -144175158 + AT_rich Low_complexity Low_complexity 1 21 0 2293 232 35 3 chr11 6608834 6609438 -144174115 + L1ME1 LINE L1 5539 6161 -5 22 35 0 0 chr11 6609571 6609600 -144173953 + AT_rich Low_complexity Low_complexity 1 29 0 370 346 54 19 chr11 6609736 6609941 -144173612 - HAL1 LINE L1 -869 1638 1427 420 249 30 117 chr11 6614962 6615159 -144168394 + MIR SINE MIR 70 249 -13 441 66 0 0 chr11 6615279 6615340 -144168213 + (TG)n Simple_repeat Simple_repeat 1 61 0 231 283 22 36 chr11 6615375 6615513 -144168040 - L1ME LINE L1 -510 5656 5521 224 341 135 0 chr11 6616311 6616437 -144167116 + L2 LINE L2 1358 1500 -1814 639 133 0 0 chr11 6616442 6616583 -144166970 + AluSg/x SINE Alu 194 334 0 723 312 84 37 chr11 6616585 6617095 -144166458 + L2 LINE L2 1705 2238 -1076 1192 107 0 18 chr11 6617126 6617284 -144166269 + AluSq SINE Alu 129 288 -25 224 30 30 0 chr11 6617284 6617317 -144166236 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3742 185 19 28 chr11 6617318 6618200 -144165353 + L1MA9 LINE L1 5439 6312 0 736 259 38 46 chr11 6619383 6619730 -144163823 - L1MD3 LINE L1 0 7995 7652 557 284 24 47 chr11 6620236 6620447 -144163106 + L3 LINE CR1 765 970 -607 279 354 71 0 chr11 6621702 6621829 -144161724 - L2 LINE L2 0 3272 3137 426 331 41 6 chr11 6623801 6623973 -144159580 - MIR SINE MIR -26 236 59 191 284 178 58 chr11 6625220 6625428 -144158125 + L2 LINE L2 2620 2852 -462 469 261 127 13 chr11 6627657 6627814 -144155739 + MIR SINE MIR 73 247 -15 8023 161 24 8 chr11 6628155 6629471 -144154082 - MSTA-int LTR MaLR -221 1430 89 2725 95 92 5 chr11 6629471 6629883 -144153670 + LTR7 LTR ERV1 1 448 -2 8023 161 24 8 chr11 6629883 6629974 -144153579 - MSTA-int LTR MaLR -1562 89 1 1905 161 39 14 chr11 6629974 6630329 -144153224 - MSTA LTR MaLR 0 428 65 1681 132 68 37 chr11 6630341 6630666 -144152887 - LTR10A LTR ERV1 -61 548 214 273 253 126 0 chr11 6630688 6630775 -144152778 - LTR10A LTR ERV1 -511 98 1 432 149 0 0 chr11 6630777 6630844 -144152709 - MSTA LTR MaLR -361 67 1 554 292 116 4 chr11 6631670 6631903 -144151650 - MIR SINE MIR 0 262 4 1442 195 47 30 chr11 6632214 6632327 -144151226 + AluJo SINE Alu 2 112 -200 387 0 0 0 chr11 6632327 6632370 -144151183 + (CA)n Simple_repeat Simple_repeat 2 44 0 1442 195 47 30 chr11 6632370 6632553 -144151000 + AluJo SINE Alu 112 303 -9 11503 223 38 30 chr11 6633911 6635620 -144147933 - L1PA16 LINE L1 0 6223 4528 333 82 0 0 chr11 6635620 6635669 -144147884 + (TG)n Simple_repeat Simple_repeat 2 50 0 11503 223 38 30 chr11 6635669 6637636 -144145917 - L1PA16 LINE L1 -1695 4528 2577 2393 89 0 13 chr11 6637636 6637949 -144145604 - AluSg1 SINE Alu 0 309 1 11503 223 38 30 chr11 6637949 6638058 -144145495 - L1PA16 LINE L1 -3646 2577 2470 909 183 0 0 chr11 6638058 6638227 -144145326 + ALR/Alpha Satellite centromeric 3 171 0 11503 223 38 30 chr11 6638227 6638782 -144144771 - L1PA16 LINE L1 -3753 2470 1921 387 0 0 0 chr11 6638782 6638825 -144144728 + (TA)n Simple_repeat Simple_repeat 1 43 0 2552 42 3 16 chr11 6638825 6639136 -144144417 - AluY SINE Alu -4 307 1 11503 223 38 30 chr11 6639136 6640442 -144143111 - L1PA16 LINE L1 -4301 1922 363 419 299 58 48 chr11 6640562 6640873 -144142680 - L1PA16 LINE L1 -5838 366 53 658 424 44 18 chr11 6641082 6641584 -144141969 - L1M2 LINE L1 -6320 529 15 603 214 13 7 chr11 6641603 6641757 -144141796 - ERVL LTR ERVL -1739 4025 3871 614 178 0 0 chr11 6641774 6641892 -144141661 + L1ME1 LINE L1 5813 5930 -236 886 283 84 27 chr11 6642045 6642786 -144140767 - L1PBb LINE L1 -4965 1883 1008 429 296 58 48 chr11 6642906 6643217 -144140336 - L1PBb LINE L1 -5838 1011 698 658 424 44 18 chr11 6643426 6643928 -144139625 - L1PBb LINE L1 -6320 529 15 603 214 13 7 chr11 6643947 6644101 -144139452 - ERVL LTR ERVL -1739 4025 3871 1006 226 4 4 chr11 6644118 6644357 -144139196 + L1ME1 LINE L1 5813 6051 -115 1985 105 25 11 chr11 6644363 6644648 -144138905 + AluSg SINE Alu 1 289 -21 4655 11 0 0 chr11 6644787 6645311 -144138242 + L1PA3 LINE L1 5628 6151 -4 216 0 0 0 chr11 6645346 6645370 -144138183 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 852 209 31 5 chr11 6645375 6645566 -144137987 + THE1C LTR MaLR 180 375 0 258 388 53 24 chr11 6645576 6645782 -144137771 + L2 LINE L2 2765 2976 -338 6277 26 3 1 chr11 6648827 6649567 -144133986 - L1PA4 LINE L1 -3 6152 5412 1419 324 53 19 chr11 6650001 6650637 -144132916 + L2 LINE L2 2184 2841 -473 193 250 100 33 chr11 6650676 6650736 -144132817 - MER5B DNA MER1_type 0 178 115 354 333 58 39 chr11 6650739 6650946 -144132607 + L1ME LINE L1 139 349 -5856 268 271 88 0 chr11 6651768 6651938 -144131615 + L1M3d LINE L1 1025 1209 -4682 347 231 0 33 chr11 6652151 6652242 -144131311 + L1ME LINE L1 1532 1619 -4777 * 652 246 11 29 chr11 6652220 6652395 -144131158 + L1MEc LINE L1 36 207 -6189 3204 269 61 32 chr11 6652399 6653750 -144129803 + L1MEc LINE L1 353 1751 -4645 2111 121 0 10 chr11 6653750 6654048 -144129505 + AluSx SINE Alu 1 295 -17 3204 269 61 32 chr11 6654048 6654150 -144129403 + L1MEc LINE L1 1751 1849 -4547 248 226 0 0 chr11 6654162 6654266 -144129287 + L1MEc LINE L1 2463 2627 -3588 351 0 0 0 chr11 6654274 6654313 -144129240 + (CA)n Simple_repeat Simple_repeat 2 40 0 6703 59 9 22 chr11 6654315 6655260 -144128293 - L1PA7 LINE L1 -21 6133 5201 5420 101 33 12 chr11 6655260 6656070 -144127483 + L1PA15 LINE L1 5337 6163 -2 521 303 76 32 chr11 6656471 6656656 -144126897 + LTR33 LTR ERVL 18 210 -311 321 237 51 85 chr11 6656712 6656830 -144126723 + LTR33 LTR ERVL 304 417 -104 462 226 8 15 chr11 6657441 6657574 -144125979 - L1MA7 LINE L1 -4 6287 6156 289 191 29 52 chr11 6657610 6657746 -144125807 - Charlie5 DNA MER1_type -126 2486 2354 2178 149 32 5 chr11 6657746 6658122 -144125431 - L1PA16 LINE L1 0 6166 5781 473 103 16 159 chr11 6658128 6658254 -144125299 - MER50 LTR ERV1 -130 604 497 1659 194 51 15 chr11 6660325 6660737 -144122816 - Charlie4a DNA MER1_type -33 475 49 1321 198 15 10 chr11 6661671 6662023 -144121530 + L1MB8 LINE L1 5118 5470 -714 2320 188 42 21 chr11 6662027 6662211 -144121342 + L1MB8 LINE L1 5610 5789 -389 1797 180 0 0 chr11 6662211 6662526 -144121027 + AluSx SINE Alu 1 315 0 2320 188 42 21 chr11 6662526 6662868 -144120685 + L1MB8 LINE L1 5789 6148 -30 415 263 22 118 chr11 6663218 6663446 -144120107 - L1ME LINE L1 -339 5782 5577 274 219 27 41 chr11 6663780 6663853 -144119700 - L2 LINE L2 -8 3305 3234 221 356 0 0 chr11 6663897 6663970 -144119583 + L2 LINE L2 3237 3309 -4 204 209 0 0 chr11 6664545 6664588 -144118965 + (CA)n Simple_repeat Simple_repeat 2 44 0 194 367 75 17 chr11 6664673 6664793 -144118760 + L2 LINE L2 3137 3263 -9 419 251 94 6 chr11 6666848 6667019 -144116534 - L1MC4 LINE L1 0 8042 7857 * 1071 263 67 25 chr11 6667017 6667596 -144115957 + L1ME3A LINE L1 5261 5889 -281 277 273 82 49 chr11 6667580 6668030 -144115523 + L1ME3 LINE L1 4754 5232 -914 * 282 334 77 15 chr11 6668058 6668382 -144115171 + L1ME3 LINE L1 5254 5591 -574 399 295 71 22 chr11 6668536 6668719 -144114834 + L1ME3 LINE L1 5752 5943 -219 563 296 70 50 chr11 6669498 6669915 -144113638 + L1ME LINE L1 5310 5738 -383 1978 158 103 8 chr11 6669915 6670302 -144113251 - MSTB LTR MaLR -2 424 1 563 296 70 50 chr11 6670302 6670326 -144113227 + L1ME LINE L1 5738 5760 -361 3237 142 45 6 chr11 6670637 6671144 -144112409 - MER1A DNA MER1_type 0 527 1 42240 39 3 0 chr11 6671389 6676532 -144107021 + L1P LINE L1 1 5161 -985 192 77 0 0 chr11 6676724 6676750 -144106803 + (CA)n Simple_repeat Simple_repeat 2 27 0 231 254 28 14 chr11 6676759 6676830 -144106723 - L1ME LINE L1 -204 5986 5915 489 283 81 12 chr11 6676962 6677135 -144106418 - MIR SINE MIR -73 189 5 530 286 83 43 chr11 6677135 6677652 -144105901 - L1ME LINE L1 -312 5878 5341 384 320 73 77 chr11 6677850 6678425 -144105128 - L1ME LINE L1 -1016 5199 4627 338 287 81 46 chr11 6678425 6678599 -144104954 + MER5A DNA MER1_type 7 186 -3 664 302 116 67 chr11 6678608 6678761 -144104792 - L1ME LINE L1 -1586 4629 4485 1907 140 32 0 chr11 6678761 6679040 -144104513 - AluSg SINE Alu -22 288 1 664 302 116 67 chr11 6679040 6679630 -144103923 - L1ME LINE L1 -1730 4485 3850 2022 234 123 31 chr11 6679819 6680560 -144102993 - L1MEc LINE L1 -3193 3022 2227 2347 86 0 19 chr11 6680560 6680875 -144102678 - AluY SINE Alu -2 309 1 2022 234 123 31 chr11 6680875 6681099 -144102454 - L1MEc LINE L1 -3988 2227 2025 659 300 106 29 chr11 6681237 6681614 -144101939 - L1MEc LINE L1 -5936 460 55 323 214 0 67 chr11 6681742 6681831 -144101722 - L1ME4a LINE L1 -71 6050 5968 874 171 0 0 chr11 6682027 6682173 -144101380 + FRAM SINE Alu 30 175 -1 271 205 39 26 chr11 6682505 6682583 -144100970 - L1ME4a LINE L1 -495 5626 5548 512 290 54 27 chr11 6682651 6682837 -144100716 + MIR SINE MIR 72 262 0 311 222 20 46 chr11 6682876 6683060 -144100493 - L1ME4a LINE L1 -897 5405 5256 737 173 167 0 chr11 6683061 6683223 -144100330 - L1P LINE L1 -1947 4199 4011 4258 149 15 8 chr11 6683224 6683948 -144099605 + L1PA16 LINE L1 5438 6166 0 28 29 0 0 chr11 6684570 6684605 -144098948 + AT_rich Low_complexity Low_complexity 1 35 0 457 393 85 22 chr11 6686256 6686704 -144096849 - L3 LINE CR1 -5 1572 1097 693 237 78 41 chr11 6687519 6687738 -144095815 + L2 LINE L2 600 826 -2488 374 246 53 18 chr11 6687738 6687852 -144095701 + MLT1G LTR MaLR 473 590 0 330 75 94 19 chr11 6688023 6688076 -144095477 - LTR67 LTR ERVL -1 556 500 245 279 99 70 chr11 6688109 6688281 -144095272 - LTR67 LTR ERVL -134 423 247 1856 178 43 0 chr11 6688300 6688648 -144094905 + L1MC3 LINE L1 7227 7589 -196 1197 139 21 72 chr11 6688674 6688911 -144094642 + AluJb SINE Alu 84 308 -4 417 30 45 15 chr11 6688924 6688991 -144094562 + (GAAA)n Simple_repeat Simple_repeat 4 72 0 576 178 36 115 chr11 6688992 6689245 -144094308 + L1MC3 LINE L1 7553 7785 0 490 306 60 50 chr11 6689421 6689819 -144093734 + L2 LINE L2 1957 2358 -956 5194 168 93 59 chr11 6692952 6693525 -144090028 - L1MC3 LINE L1 -35 7750 7198 250 163 0 0 chr11 6693525 6693568 -144089985 - MLT1F1 LTR MaLR -478 89 47 5194 168 93 59 chr11 6693568 6694227 -144089326 - L1MC3 LINE L1 -587 7198 6432 387 292 158 15 chr11 6694390 6694592 -144088961 - MIR SINE MIR -13 249 19 850 234 73 5 chr11 6694610 6694815 -144088738 - MER20 DNA MER1_type 0 219 1 250 307 49 86 chr11 6696439 6696602 -144086951 - L2 LINE L2 -473 2841 2685 999 193 104 0 chr11 6696614 6696816 -144086737 + MER58A DNA MER1_type 1 223 -1 2471 42 0 26 chr11 6697204 6697511 -144086042 + AluY SINE Alu 1 299 -12 474 188 30 0 chr11 6697516 6697617 -144085936 + L1MC5 LINE L1 7331 7434 -527 1048 247 113 43 chr11 6698083 6698553 -144085000 - MLT1D LTR MaLR 0 505 3 1575 231 130 47 chr11 6698680 6699255 -144084298 + L1MB5 LINE L1 347 969 -5573 5479 203 105 22 chr11 6699258 6702611 -144080942 + L1MB5 LINE L1 2965 6660 -12 263 354 89 53 chr11 6702624 6703017 -144080536 - L2 LINE L2 -2288 1026 620 185 217 87 0 chr11 6703087 6703133 -144080420 + L2 LINE L2 3223 3272 0 1561 166 10 41 chr11 6703655 6703950 -144079603 + AluJo SINE Alu 14 299 -13 1528 199 3 17 chr11 6704006 6704307 -144079246 - AluJo SINE Alu -12 300 4 296 333 97 14 chr11 6705043 6705187 -144078366 + MER5B DNA MER1_type 1 156 -22 462 278 159 30 chr11 6706054 6706324 -144077229 - L2 LINE L2 -4 3309 3005 597 168 95 89 chr11 6707552 6707694 -144075859 + MIR SINE MIR 71 216 -46 2216 52 0 4 chr11 6707694 6707962 -144075591 + AluY SINE Alu 1 267 -44 597 168 95 89 chr11 6707962 6707998 -144075555 + MIR SINE MIR 216 250 -12 515 161 0 11 chr11 6708126 6708213 -144075340 - FLAM_A SINE Alu -15 127 42 385 216 123 56 chr11 6708518 6708680 -144074873 - L1ME4a LINE L1 -224 5897 5725 467 267 50 6 chr11 6708684 6708864 -144074689 - L1ME4a LINE L1 -450 5671 5484 1136 336 149 22 chr11 6708971 6710113 -144073440 + L2 LINE L2 1608 2894 -420 236 250 14 56 chr11 6710125 6710197 -144073356 - L2 LINE L2 -11 3302 3234 300 354 95 55 chr11 6710216 6710541 -144073012 + L2 LINE L2 2885 3222 -50 1165 201 94 0 chr11 6711025 6711269 -144072284 + AluJo SINE Alu 46 312 0 1036 279 136 9 chr11 6711382 6711844 -144071709 - MLT1G1 LTR MaLR -2 593 73 330 276 39 31 chr11 6711872 6711999 -144071554 - MLT1G1-int LTR MaLR -1 1370 1243 212 206 111 0 chr11 6712244 6712307 -144071246 - L2 LINE L2 -944 2370 2301 22 0 0 0 chr11 6712433 6712455 -144071098 + AT_rich Low_complexity Low_complexity 1 22 0 43854 40 7 1 chr11 6712455 6718582 -144064971 - L1PA3 LINE L1 -3 6152 7 21 0 0 0 chr11 6718589 6718610 -144064943 + AT_rich Low_complexity Low_complexity 1 21 0 2860 169 74 11 chr11 6720876 6721444 -144062109 + MER6A DNA MER2_type 2 605 0 2093 166 62 31 chr11 6722265 6722793 -144060760 - MLT2A2 LTR ERVL 0 554 1 191 219 55 55 chr11 6723018 6723091 -144060462 - L2 LINE L2 -469 2845 2773 205 167 0 30 chr11 6723639 6723705 -144059848 + (TA)n Simple_repeat Simple_repeat 2 65 0 308 244 37 52 chr11 6723841 6723976 -144059577 + L1ME LINE L1 5473 5605 -516 255 341 0 0 chr11 6724976 6725064 -144058489 - ERVL LTR ERVL -4845 919 832 280 207 61 24 chr11 6725118 6725200 -144058353 - ERVL LTR ERVL -5062 702 618 593 270 105 40 chr11 6725705 6726131 -144057422 - LTR33 LTR ERVL -8 513 3 663 204 85 11 chr11 6726341 6726517 -144057036 + MER5A DNA MER1_type 1 189 0 1515 208 98 106 chr11 6726827 6727516 -144056037 - L1MC4 LINE L1 -749 5397 5435 350 277 122 27 chr11 6727516 6727704 -144055849 - MER63A DNA MER1_type -3 207 2 1515 208 98 106 chr11 6727704 6728049 -144055504 - L1MC4 LINE L1 -710 5436 5090 1363 212 80 24 chr11 6728051 6728513 -144055040 - L1MC4 LINE L1 -1087 5059 4572 721 245 97 7 chr11 6729187 6729477 -144054076 - L1MC4 LINE L1 -1563 4583 4268 2863 127 27 43 chr11 6729929 6730442 -144053111 - LTR10B LTR ERV1 0 505 1 532 195 55 28 chr11 6730462 6730614 -144052939 + MER21B LTR ERV1 614 754 -109 310 241 69 23 chr11 6730660 6730747 -144052806 - MER77 LTR ERV1 -4 601 526 3288 163 96 33 chr11 6730747 6731056 -144052497 - LTR62 LTR ERVK -2 717 429 2383 121 32 69 chr11 6731056 6731560 -144051993 - LTR19A LTR ERV1 -1 485 1 3288 163 96 33 chr11 6731560 6731924 -144051629 - LTR62 LTR ERVK -290 429 1 1574 231 39 89 chr11 6731924 6732430 -144051123 - MER21B LTR ERV1 -368 495 15 2660 186 24 20 chr11 6732695 6733234 -144050319 - MER21B-int LTR ERV1 -55 4136 3596 2148 88 77 64 chr11 6733334 6733745 -144049808 + LTR14B LTR ERVK 1 608 0 309 282 24 24 chr11 6733788 6733958 -144049595 + L1ME3A LINE L1 3776 3945 -2201 620 266 108 22 chr11 6734221 6734544 -144049009 + L1ME3A LINE L1 5618 5968 -202 986 126 0 0 chr11 6734679 6734822 -144048731 + FLAM_C SINE Alu 1 143 0 475 171 34 0 chr11 6734829 6734917 -144048636 + AluSg/x SINE Alu 201 291 -18 684 76 0 0 chr11 6735084 6735176 -144048377 - AluY SINE Alu -10 301 210 2012 122 3 11 chr11 6735290 6735605 -144047948 + AluSx SINE Alu 1 313 0 238 236 103 94 chr11 6735855 6736058 -144047495 + L1 LINE L1 4765 4969 -1177 513 322 90 25 chr11 6736112 6736357 -144047196 - MIR SINE MIR 0 262 2 305 306 45 37 chr11 6737060 6737194 -144046359 + L1ME4a LINE L1 5297 5431 -690 1670 127 0 12 chr11 6737484 6737743 -144045810 + AluSx SINE Alu 40 295 -17 369 224 121 0 chr11 6737749 6737865 -144045688 + L1ME4a LINE L1 5767 5896 -225 266 314 0 0 chr11 6738043 6738113 -144045440 - L2 LINE L2 0 3313 3244 227 329 0 0 chr11 6738169 6738254 -144045299 + (TA)n Simple_repeat Simple_repeat 2 86 0 2358 98 0 0 chr11 6738657 6738962 -144044591 - AluSx SINE Alu -6 306 2 835 242 106 3 chr11 6739731 6740062 -144043491 - L1M4 LINE L1 -1571 4575 4211 1045 228 189 30 chr11 6740097 6740383 -144043170 - L1M4 LINE L1 -2437 3709 3470 2012 133 88 14 chr11 6740383 6740736 -144042817 + L1PA15 LINE L1 5787 6165 0 1045 228 189 30 chr11 6740736 6741011 -144042542 - L1M4 LINE L1 -2676 3470 3059 6634 64 26 1 chr11 6741041 6742688 -144040865 - L1PA7 LINE L1 0 6154 4482 1884 168 0 0 chr11 6742818 6743109 -144040444 + AluJb SINE Alu 3 293 -19 2104 115 3 3 chr11 6744017 6744313 -144039240 - AluSq SINE Alu -17 296 1 1193 255 97 28 chr11 6744327 6744938 -144038615 + L1MC5 LINE L1 7261 7913 -48 592 292 58 45 chr11 6745021 6745418 -144038135 + MLT1J1 LTR MaLR 43 444 -2 291 242 30 0 chr11 6745427 6745493 -144038060 + L2 LINE L2 3188 3255 -17 308 266 125 23 chr11 6745649 6745777 -144037776 + L2 LINE L2 3170 3310 -3 22 35 0 0 chr11 6746366 6746395 -144037158 + AT_rich Low_complexity Low_complexity 1 29 0 790 200 69 23 chr11 6746419 6746594 -144036959 - MER58A DNA MER1_type -15 209 27 12854 39 6 1 chr11 6747141 6749484 -144034069 - L1PA5 LINE L1 -4 6150 3791 6456 97 52 0 chr11 6749484 6750455 -144033098 - L1MA1 LINE L1 -4 6298 5271 825 214 124 19 chr11 6751038 6751292 -144032261 - MLT1D LTR MaLR -2 503 199 441 147 27 0 chr11 6751296 6751371 -144032182 + MLT1B LTR MaLR 1 77 -313 1298 168 96 40 chr11 6751371 6751621 -144031932 + Tigger7 DNA MER2_type 1 264 -2223 577 177 0 10 chr11 6751626 6751722 -144031831 + Tigger7 DNA MER2_type 2392 2486 -1 * 1393 183 46 3 chr11 6751722 6752003 -144031550 + MLT1B LTR MaLR 75 367 -23 820 201 22 22 chr11 6752001 6752180 -144031373 - MSTD LTR MaLR -217 179 1 * 1048 196 43 33 chr11 6752384 6752660 -144030893 + L1ME2 LINE L1 5738 6016 -148 730 214 0 0 chr11 6752865 6752996 -144030557 + FLAM_C SINE Alu 1 131 -2 250 265 15 0 chr11 6753364 6753432 -144030121 + LTR50 LTR ERVL 1 69 -726 312 293 42 60 chr11 6753462 6753629 -144029924 + L1MC4 LINE L1 6912 7075 -967 27 29 0 0 chr11 6753932 6753966 -144029587 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr11 6754033 6754054 -144029499 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr11 6754128 6754163 -144029390 + AT_rich Low_complexity Low_complexity 1 35 0 31 26 0 0 chr11 6754486 6754524 -144029029 + AT_rich Low_complexity Low_complexity 1 38 0 7712 22 2 0 chr11 6754836 6756447 -144027106 - L1PA3 LINE L1 -2 6153 4541 10960 29 0 0 chr11 6756447 6757779 -144025774 + L1P LINE L1 2453 3784 -2362 527 341 39 45 chr11 6758009 6758338 -144025215 + L1ME LINE L1 5254 5560 -561 2207 108 3 3 chr11 6758338 6758634 -144024919 - AluSq SINE Alu -17 296 1 527 341 39 45 chr11 6758634 6758807 -144024746 + L1ME LINE L1 5560 5733 -388 8175 181 33 17 chr11 6759090 6761768 -144021785 + L1PA16 LINE L1 3456 6166 0 228 139 0 0 chr11 6763049 6763085 -144020468 + MER92B LTR ERV1 1 36 -600 2244 92 20 0 chr11 6763105 6763400 -144020153 + AluSg SINE Alu 5 305 -5 355 92 154 0 chr11 6763404 6763469 -144020084 - MADE1 DNA Mariner 0 80 6 320 169 0 0 chr11 6763512 6763571 -144019982 + MER92B LTR ERV1 431 489 -147 1375 286 73 24 chr11 6763579 6763985 -144019568 + ERVL LTR ERVL 3282 3718 -2046 2739 136 38 17 chr11 6763985 6764462 -144019091 + LTR45B LTR ERV1 3 489 0 1375 286 73 24 chr11 6764462 6764551 -144019002 + ERVL LTR ERVL 3718 3801 -1963 186 189 0 0 chr11 6764970 6765007 -144018546 + (CA)n Simple_repeat Simple_repeat 2 38 0 442 242 134 46 chr11 6766120 6766508 -144017045 + MLT1H LTR MaLR 26 495 -54 2889 185 33 2 chr11 6767011 6767551 -144016002 + MER41D LTR ERV1 1 557 0 625 253 102 32 chr11 6767554 6767898 -144015655 - HAL1 LINE L1 -87 2420 2053 2561 170 26 65 chr11 6767938 6768519 -144015034 - MER82 DNA MER2_type 0 653 96 192 279 72 27 chr11 6768532 6768643 -144014910 + MIR SINE MIR 106 221 -41 328 284 34 68 chr11 6768709 6768885 -144014668 - MIR3 SINE MIR -29 179 10 183 216 0 0 chr11 6769275 6769312 -144014241 - MIR SINE MIR -223 39 3 199 292 92 77 chr11 6769326 6769456 -144014097 + L2 LINE L2 2941 3072 -200 1063 268 180 7 chr11 6769760 6770176 -144013377 + L2 LINE L2 2528 3012 -301 404 298 88 6 chr11 6770275 6770446 -144013107 - L1ME LINE L1 -460 5661 5477 641 139 101 32 chr11 6771904 6772062 -144011491 + MER53 DNA DNA 3 171 -18 227 224 0 35 chr11 6772175 6772233 -144011320 - HAL1b LINE L1 -628 720 665 364 277 116 37 chr11 6772246 6772500 -144011053 - HAL1b LINE L1 -750 1652 345 235 245 98 37 chr11 6772534 6772697 -144010856 - HAL1 LINE L1 -1183 1324 1152 230 175 0 18 chr11 6775927 6775984 -144007569 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 292 207 49 0 chr11 6776544 6776626 -144006927 + MLT1H LTR MaLR 464 549 0 260 256 64 48 chr11 6777291 6777416 -144006137 - MIR SINE MIR -48 214 88 263 339 70 0 chr11 6777690 6777805 -144005748 - MIR SINE MIR -62 200 78 39 80 0 0 chr11 6778094 6778182 -144005371 + AT_rich Low_complexity Low_complexity 1 88 0 22 56 0 0 chr11 6778316 6778352 -144005201 + AT_rich Low_complexity Low_complexity 1 36 0 307 286 47 23 chr11 6778572 6778647 -144004906 - L1MC4a LINE L1 -1913 5895 5823 2402 194 83 21 chr11 6778647 6779179 -144004374 + MLT1F1 LTR MaLR 1 565 -2 307 286 47 23 chr11 6779179 6779274 -144004279 - L1MC4a LINE L1 -1985 5823 5721 812 226 18 128 chr11 6779950 6780495 -144003058 - L1MC5 LINE L1 -738 7223 6739 45 0 0 0 chr11 6781528 6781573 -144001980 + AT_rich Low_complexity Low_complexity 1 45 0 740 293 98 53 chr11 6781589 6782365 -144001188 + L1M4 LINE L1 2199 2939 -3207 1765 174 0 3 chr11 6782365 6782667 -144000886 + AluJb SINE Alu 1 301 0 6696 174 21 6 chr11 6782673 6784796 -143998757 + L1PA15 LINE L1 4015 6159 -6 740 293 98 53 chr11 6784796 6786028 -143997525 + L1M4 LINE L1 2943 4304 -1842 319 265 46 71 chr11 6786357 6786640 -143996913 + L1P LINE L1 4759 5034 -1112 1209 272 96 38 chr11 6787033 6787532 -143996021 - MLT1F LTR MaLR -10 532 52 267 255 50 93 chr11 6787759 6787878 -143995675 + MIR SINE MIR 33 147 -61 471 288 126 28 chr11 6789283 6789498 -143994055 + MIR SINE MIR 7 242 -20 363 276 138 8 chr11 6790142 6790265 -143993288 - L1PA15-16 LINE L1 -5567 1282 1144 27 62 0 0 chr11 6790971 6791019 -143992534 + AT_rich Low_complexity Low_complexity 1 48 0 72 96 0 0 chr11 6791116 6791335 -143992218 + AT_rich Low_complexity Low_complexity 1 219 0 208 187 41 0 chr11 6791335 6791458 -143992095 + (TA)n Simple_repeat Simple_repeat 1 128 0 1958 169 82 17 chr11 6791512 6791914 -143991639 - MSTA LTR MaLR 0 428 1 252 246 88 18 chr11 6791938 6792052 -143991501 + L1MEc LINE L1 1551 1672 -5049 516 325 93 58 chr11 6792751 6793148 -143990405 + HAL1 LINE L1 1124 1534 -973 319 310 36 7 chr11 6793335 6793538 -143990015 + L1MEc LINE L1 2430 2636 -3904 4675 33 0 0 chr11 6793971 6794862 -143988691 + L1PA3 LINE L1 5070 6155 0 421 164 277 66 chr11 6794863 6795119 -143988434 + L2 LINE L2 1405 1714 -1600 1201 198 50 4 chr11 6795127 6795365 -143988188 - MLT1A1 LTR MaLR 0 365 117 3031 248 85 58 chr11 6795465 6796625 -143986928 + L2 LINE L2 1723 2914 -400 978 281 82 54 chr11 6798215 6798603 -143984950 + L2 LINE L2 2894 3292 -21 680 289 105 14 chr11 6800720 6801186 -143982367 - L1ME3A LINE L1 -35 6127 5594 450 192 104 63 chr11 6801221 6801411 -143982142 - L1MD3 LINE L1 -61 7934 7520 228 200 50 0 chr11 6801442 6801502 -143982051 - L1ME3A LINE L1 -564 5606 5544 2957 188 102 24 chr11 6801613 6802362 -143981191 - L1MC3 LINE L1 -273 7512 6706 1786 130 7 40 chr11 6802873 6803010 -143980543 + AluSx SINE Alu 1 141 -171 279 0 0 0 chr11 6803010 6803041 -143980512 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1786 130 7 40 chr11 6803041 6803203 -143980350 + AluSx SINE Alu 141 290 -22 914 214 24 29 chr11 6803245 6803455 -143980098 + MER20 DNA MER1_type 7 215 -4 258 250 158 0 chr11 6803819 6803939 -143979614 + MIR SINE MIR 69 207 -55 289 268 134 0 chr11 6804443 6804525 -143979028 - MIR SINE MIR -58 204 112 * 406 333 159 17 chr11 6804523 6804932 -143978621 - L2 LINE L2 -1381 1933 1467 226 350 50 0 chr11 6805335 6805415 -143978138 + MIR SINE MIR 20 103 -159 185 333 133 54 chr11 6805426 6805924 -143977629 - L2 LINE L2 -2238 1076 540 306 322 82 12 chr11 6806034 6806205 -143977348 - MIR SINE MIR -21 241 59 195 42 0 0 chr11 6807228 6807252 -143976301 + (TA)n Simple_repeat Simple_repeat 1 24 0 1756 144 35 75 chr11 6808082 6808429 -143975124 + MER1B DNA MER1_type 1 333 -6 292 229 0 0 chr11 6808965 6809026 -143974527 - L1M4 LINE L1 -1363 4783 4723 253 235 0 0 chr11 6809210 6809261 -143974292 - L1ME4a LINE L1 -87 6034 5984 199 307 67 0 chr11 6809439 6809514 -143974039 - L2 LINE L2 0 3272 3193 31 0 0 0 chr11 6810088 6810119 -143973434 + AT_rich Low_complexity Low_complexity 1 31 0 523 278 62 46 chr11 6811946 6812187 -143971366 - LTR16A LTR ERVL -189 261 17 462 312 88 6 chr11 6812749 6812919 -143970634 - MIR SINE MIR 0 262 79 247 265 103 0 chr11 6813360 6813428 -143970125 + L2 LINE L2 3149 3223 -49 187 79 53 0 chr11 6813606 6813644 -143969909 + (TA)n Simple_repeat Simple_repeat 1 40 0 536 319 58 9 chr11 6813662 6813888 -143969665 - MIR SINE MIR -20 242 6 316 313 10 30 chr11 6814034 6814133 -143969420 - MIR SINE MIR -115 147 51 233 380 78 7 chr11 6814163 6814305 -143969248 - L3 LINE CR1 -234 1343 1192 2273 82 0 23 chr11 6816919 6817224 -143966329 - AluSc SINE Alu -11 298 1 2062 123 7 10 chr11 6817654 6817955 -143965598 + AluSx SINE Alu 1 300 -12 36 53 0 0 chr11 6818681 6818738 -143964815 + AT_rich Low_complexity Low_complexity 1 57 0 6636 127 20 14 chr11 6818897 6820374 -143963179 - L1MA3 LINE L1 0 6305 4823 548 43 0 0 chr11 6821933 6822002 -143961551 + L1M1 LINE L1 5723 5791 -514 320 338 94 57 chr11 6823826 6824054 -143959499 - MIR SINE MIR -2 260 23 326 318 141 5 chr11 6824109 6824307 -143959246 - L1ME LINE L1 -453 5668 5444 33 73 0 0 chr11 6824405 6824473 -143959080 + AT_rich Low_complexity Low_complexity 1 68 0 21 0 0 0 chr11 6828045 6828066 -143955487 + AT_rich Low_complexity Low_complexity 1 21 0 1479 191 146 45 chr11 6828417 6828836 -143954717 - LTR40c LTR ERVL 0 465 5 3937 236 67 40 chr11 6828840 6829929 -143953624 - HERVL40 LTR ERVL 0 5530 4413 592 296 109 49 chr11 6830066 6830895 -143952658 - L1ME LINE L1 -1221 4925 4041 7743 130 43 5 chr11 6830949 6832778 -143950775 - L1PA6 LINE L1 0 6154 4255 1175 276 140 23 chr11 6832782 6833781 -143949772 - L1ME LINE L1 -2280 3866 2751 1231 206 39 31 chr11 6833850 6834136 -143949417 - AluJo SINE Alu -22 290 3 308 300 93 0 chr11 6834216 6834356 -143949197 - L1ME LINE L1 -3576 2570 2418 2222 120 0 0 chr11 6834811 6835111 -143948442 - AluSx SINE Alu -12 300 1 781 265 57 33 chr11 6835802 6836047 -143947506 + MIR SINE MIR 1 251 -11 207 167 0 0 chr11 6836827 6836863 -143946690 + (CATA)n Simple_repeat Simple_repeat 2 37 0 479 361 17 11 chr11 6837194 6837374 -143946179 + MER5A DNA MER1_type 8 188 -1 1199 221 32 4 chr11 6837553 6837806 -143945747 - MLT1H1 LTR MaLR 0 555 296 1731 252 143 26 chr11 6837821 6838435 -143945118 - MER50 LTR ERV1 -23 711 26 379 278 87 17 chr11 6838435 6838550 -143945003 - MER50 LTR ERV1 -611 123 1 456 303 98 15 chr11 6838581 6838783 -143944770 - MLT1H1 LTR MaLR -348 219 1 3348 209 58 24 chr11 6838890 6839642 -143943911 - MER21B LTR ERV1 -62 801 24 3155 146 49 12 chr11 6840157 6840727 -143942826 - LTR59 LTR ERV1 -6 591 1 245 294 65 0 chr11 6840882 6840974 -143942579 + L1 LINE L1 3852 3949 -2197 613 203 115 0 chr11 6841598 6841746 -143941807 + MER96B DNA MER1_type? 253 417 0 363 285 124 0 chr11 6841813 6841999 -143941554 - L1M4 LINE L1 -2938 3208 3000 551 289 93 50 chr11 6841999 6842363 -143941190 + L2 LINE L2 2934 3313 0 2150 131 73 14 chr11 6843028 6843372 -143940181 - THE1B LTR MaLR 0 364 1 1182 102 71 31 chr11 6843384 6843609 -143939944 + L1MB2 LINE L1 5938 6171 0 196 148 33 33 chr11 6843609 6843644 -143939909 + (TTAAA)n Simple_repeat Simple_repeat 2 39 -23 2474 84 0 0 chr11 6843644 6843955 -143939598 + AluY SINE Alu 1 311 0 196 148 33 33 chr11 6843955 6843980 -143939573 + (TTAAA)n Simple_repeat Simple_repeat 38 62 0 1397 94 11 0 chr11 6843995 6844176 -143939377 + AluSq SINE Alu 1 183 -130 1682 161 42 7 chr11 6844282 6844568 -143938985 - AluJo SINE Alu -16 296 1 723 199 27 120 chr11 6844571 6844717 -143938836 - L1ME2 LINE L1 -152 6012 5909 2330 98 10 0 chr11 6844717 6845022 -143938531 - AluSx SINE Alu -4 308 1 723 199 27 120 chr11 6845022 6845205 -143938348 - L1ME2 LINE L1 -255 5909 5710 314 240 104 48 chr11 6896808 6896933 -143886620 + HAL1 LINE L1 1 132 -2375 1455 150 29 60 chr11 6897414 6897496 -143886057 - MLT1F1 LTR MaLR 0 595 512 2397 93 3 0 chr11 6897496 6897806 -143885747 - AluSp SINE Alu -2 311 1 1455 150 29 60 chr11 6897806 6898006 -143885547 - MLT1F1 LTR MaLR -83 512 294 416 270 18 49 chr11 6898270 6898433 -143885120 - Charlie8 DNA MER1_type -2201 216 59 332 339 48 16 chr11 6898477 6898601 -143884952 + HAL1 LINE L1 754 881 -1626 80 63 0 0 chr11 6899079 6899222 -143884331 + AT_rich Low_complexity Low_complexity 1 143 0 328 164 60 0 chr11 6899752 6899819 -143883734 + MIR SINE MIR 24 94 -168 229 355 21 0 chr11 6900887 6901076 -143882477 - L1M4 LINE L1 -3549 2597 2405 312 286 9 0 chr11 6901087 6901199 -143882354 + L1ME3A LINE L1 5802 5914 -250 309 266 29 86 chr11 6901277 6901416 -143882137 + L1ME3A LINE L1 5963 6093 -77 538 275 68 68 chr11 6901808 6902059 -143881494 - MIR SINE MIR 0 262 12 189 0 0 0 chr11 6902467 6902488 -143881065 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 214 203 0 109 chr11 6902674 6902738 -143880815 + L2 LINE L2 3255 3311 -2 575 190 78 0 chr11 6902949 6903065 -143880488 + MLT2B1 LTR ERVL 2 126 -394 915 258 154 20 chr11 6903344 6903642 -143879911 + MLT2B1 LTR ERVL 129 466 -54 238 50 50 0 chr11 6903731 6903771 -143879782 + (TA)n Simple_repeat Simple_repeat 2 43 0 315 0 0 0 chr11 6903774 6903809 -143879744 + (CA)n Simple_repeat Simple_repeat 2 36 0 1599 163 8 127 chr11 6903820 6904213 -143879340 + MER7A DNA MER2_type 1 344 -2 386 61 0 0 chr11 6904223 6904272 -143879281 + MLT2B1 LTR ERVL 472 520 0 242 319 52 43 chr11 6905012 6905128 -143878425 - L2 LINE L2 -6 3266 3150 1116 286 79 44 chr11 6905446 6905604 -143877949 - L2 LINE L2 0 3313 3162 353 32 63 0 chr11 6905604 6905667 -143877886 + (TA)n Simple_repeat Simple_repeat 2 68 0 1116 286 79 44 chr11 6905667 6906248 -143877305 - L2 LINE L2 -151 3162 2472 6132 96 4 30 chr11 6907878 6908808 -143874745 - L1P LINE L1 -3504 2642 1737 * 10599 77 11 1 chr11 6908804 6910709 -143872844 + L1P3 LINE L1 3899 5819 -335 423 217 275 7 chr11 6911742 6911880 -143871673 + MER5A DNA MER1_type 9 183 -6 297 0 0 0 chr11 6911966 6911999 -143871554 + (TA)n Simple_repeat Simple_repeat 1 33 0 592 374 65 39 chr11 6912313 6912620 -143870933 + L2 LINE L2 2013 2311 -1003 1499 230 19 17 chr11 6912620 6912981 -143870572 + MLT1A1 LTR MaLR 2 363 -2 592 374 65 39 chr11 6912981 6913400 -143870153 + L2 LINE L2 2311 2758 -556 5073 217 65 41 chr11 6913937 6914076 -143869477 + L1MC4 LINE L1 6490 6624 -1418 201 39 0 0 chr11 6914076 6914102 -143869451 + (CA)n Simple_repeat Simple_repeat 2 27 0 5073 217 65 41 chr11 6914102 6915478 -143868075 + L1MC4 LINE L1 6624 8041 -1 664 296 79 38 chr11 6915612 6915852 -143867701 + MIR SINE MIR 3 252 -10 552 288 64 38 chr11 6916461 6916697 -143866856 + MIR SINE MIR 1 242 -20 28 71 0 0 chr11 6916826 6916882 -143866671 + AT_rich Low_complexity Low_complexity 1 56 0 988 173 9 33 chr11 6916935 6917149 -143866404 - L1MD1 LINE L1 -248 6388 6180 1945 145 3 0 chr11 6917258 6917561 -143865992 - AluSx SINE Alu -8 304 1 8512 210 64 40 chr11 6917562 6921440 -143862113 - L1MD1 LINE L1 -455 6181 2399 414 0 0 0 chr11 6921440 6921486 -143862067 + (TA)n Simple_repeat Simple_repeat 1 46 0 8582 38 0 20 chr11 6921487 6923343 -143860210 - L1PA5 LINE L1 -7 6147 4313 8512 210 64 40 chr11 6923343 6924126 -143859427 - L1MD1 LINE L1 -4236 2400 1391 22 56 0 0 chr11 6924728 6924764 -143858789 + AT_rich Low_complexity Low_complexity 1 36 0 2139 116 3 17 chr11 6925316 6925617 -143857936 + AluSx SINE Alu 1 297 -15 207 318 118 0 chr11 6925775 6925860 -143857693 + L2 LINE L2 2764 2858 -456 450 367 91 39 chr11 6926103 6926668 -143856885 - L2 LINE L2 -213 3059 2469 229 323 16 0 chr11 6926814 6926876 -143856677 + L2 LINE L2 3186 3248 -24 280 206 16 63 chr11 6927590 6927653 -143855900 + MLT1F LTR MaLR 1 60 -482 1762 180 0 3 chr11 6927670 6927953 -143855600 - AluJo SINE Alu -30 282 1 560 294 0 12 chr11 6927956 6928119 -143855434 + MLT1F LTR MaLR 49 209 -333 1130 65 13 0 chr11 6928222 6928375 -143855178 + L1PA7 LINE L1 5929 6083 -71 1001 176 38 0 chr11 6928415 6928625 -143854928 - L1MD3 LINE L1 -1 7994 7777 506 269 59 0 chr11 6929164 6929283 -143854270 - MER5A DNA MER1_type -62 127 2 431 235 18 71 chr11 6929284 6929454 -143854099 - L1MC5 LINE L1 -876 7085 6925 * 771 255 0 59 chr11 6929450 6929689 -143853864 - L1MC4 LINE L1 -866 7002 6718 614 297 76 10 chr11 6929931 6930234 -143853319 - L1ME4a LINE L1 -269 5852 5530 2460 37 0 10 chr11 6930782 6931076 -143852477 - AluY SINE Alu -20 291 1 665 310 162 18 chr11 6931289 6931676 -143851877 + L2 LINE L2 2687 3127 -186 402 298 121 24 chr11 6931811 6931935 -143851618 + L2 LINE L2 3177 3312 -1 443 215 75 0 chr11 6932070 6932177 -143851376 - MIR SINE MIR -50 212 98 527 231 52 29 chr11 6933117 6933290 -143850263 + L2 LINE L2 2173 2349 -965 508 270 166 43 chr11 6933285 6933563 -143849990 - L2 LINE L2 0 3313 3002 * 433 308 160 0 chr11 6933927 6934083 -143849470 - MER5A DNA MER1_type 0 189 9 270 291 100 18 chr11 6934334 6934444 -143849109 - MIR SINE MIR -108 154 36 187 352 110 11 chr11 6934795 6934886 -143848667 + L2 LINE L2 3169 3268 -4 2086 115 3 0 chr11 6935112 6935399 -143848154 - AluSg SINE Alu -22 288 1 318 306 58 16 chr11 6935489 6935610 -143847943 + MIR SINE MIR 76 201 -61 685 265 85 36 chr11 6936456 6936864 -143846689 + MLT1H LTR MaLR 13 549 0 2607 55 0 0 chr11 6937571 6937878 -143845675 + AluY SINE Alu 1 307 -4 180 0 0 0 chr11 6937878 6937898 -143845655 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 274 376 11 0 chr11 6938548 6938641 -143844912 + LTR67 LTR ERVL 97 190 -367 289 164 36 0 chr11 6938912 6938967 -143844586 + LTR33A LTR ERVL 444 500 -23 201 226 32 0 chr11 6939356 6939418 -143844135 + (TA)n Simple_repeat Simple_repeat 2 65 0 7956 169 53 51 chr11 6940014 6941828 -143841725 + L1MC3 LINE L1 5968 7785 0 1458 64 0 16 chr11 6941974 6942185 -143841368 + AluSq SINE Alu 112 313 0 838 217 87 129 chr11 6942185 6943087 -143840466 + L1MC5 LINE L1 7049 7912 -49 348 218 0 0 chr11 6943120 6943207 -143840346 + (TA)n Simple_repeat Simple_repeat 1 87 0 1434 249 78 11 chr11 6943214 6943588 -143839965 - LTR16A LTR ERVL 0 450 52 1812 169 60 69 chr11 6944761 6945231 -143838322 - MER31B LTR ERV1 0 661 1 584 316 65 71 chr11 6945505 6945954 -143837599 + L2 LINE L2 2827 3272 0 21 0 0 31 chr11 6946768 6946779 -143836774 + AT_rich Low_complexity Low_complexity 1 11 -20 2072 58 11 0 chr11 6946779 6947053 -143836500 - L1PA8 LINE L1 -10 6162 5886 21 0 0 31 chr11 6947053 6947073 -143836480 + AT_rich Low_complexity Low_complexity 11 31 0 892 315 86 47 chr11 6947099 6947890 -143835663 - HAL1 LINE L1 -1590 917 96 1514 256 71 86 chr11 6947984 6948300 -143835253 - L1MC4 LINE L1 0 8042 7723 2414 88 0 7 chr11 6948300 6948606 -143834947 + AluSg SINE Alu 3 306 -4 1514 256 71 86 chr11 6948606 6949201 -143834352 - L1MC4 LINE L1 -319 7723 7120 4879 91 13 4 chr11 6949201 6949891 -143833662 - L1PA16 LINE L1 -11 6155 5460 1514 256 71 86 chr11 6949891 6951194 -143832359 - L1MC4 LINE L1 -922 7120 5846 2070 114 17 3 chr11 6951194 6951470 -143832083 + AluSx SINE Alu 1 283 -29 226 0 0 0 chr11 6951470 6951495 -143832058 + (CAAA)n Simple_repeat Simple_repeat 1 132 0 2070 114 17 3 chr11 6951495 6951508 -143832045 + AluSx SINE Alu 283 294 -18 1514 256 71 86 chr11 6951508 6951790 -143831763 - L1MC4 LINE L1 -2196 5846 5561 4657 51 20 3 chr11 6951878 6952466 -143831087 + L1PA7 LINE L1 5556 6153 -1 1480 226 86 47 chr11 6954375 6954861 -143828692 + L1M1 LINE L1 12 516 -7049 * 5131 31 0 6 chr11 6954826 6955461 -143828092 - L1PA3 LINE L1 -3279 2867 2237 21276 26 9 0 chr11 6955461 6958764 -143824789 + L1PA3 LINE L1 2841 6152 -3 337 154 0 0 chr11 6958778 6958843 -143824710 + L1PA5 LINE L1 6084 6148 -6 17745 148 34 12 chr11 6958870 6961824 -143821729 + L1M1 LINE L1 502 3521 -4044 2128 85 0 22 chr11 6961836 6962154 -143821399 + L1MA1 LINE L1 5888 6198 -104 22 0 0 0 chr11 6963384 6963406 -143820147 + AT_rich Low_complexity Low_complexity 1 22 0 1350 153 138 89 chr11 6963551 6963725 -143819828 - Charlie1b DNA MER1_type -2238 523 359 4463 136 20 8 chr11 6963725 6964491 -143819062 - L1MA5 LINE L1 -2 6298 5524 1350 153 138 89 chr11 6964491 6964766 -143818787 - Charlie1b DNA MER1_type -2402 359 52 212 336 143 0 chr11 6964852 6964971 -143818582 + MIR SINE MIR 127 262 0 30 34 0 34 chr11 6965612 6965648 -143817905 + AT_rich Low_complexity Low_complexity 1 36 -21 2874 0 0 0 chr11 6965648 6965955 -143817598 - AluY SINE Alu -4 307 1 30 34 0 34 chr11 6965955 6965977 -143817576 + AT_rich Low_complexity Low_complexity 36 57 0 2185 106 61 35 chr11 6965977 6966354 -143817199 - L1PA16 LINE L1 -6 6160 5774 2100 109 12 34 chr11 6966448 6966768 -143816785 + AluSq SINE Alu 1 313 0 278 250 42 65 chr11 6966901 6967069 -143816484 + L1MEc LINE L1 1399 1562 -4834 22 35 0 0 chr11 6967594 6967623 -143815930 + AT_rich Low_complexity Low_complexity 1 29 0 2210 118 6 13 chr11 6967842 6968156 -143815397 + AluSx SINE Alu 1 312 0 1356 191 93 17 chr11 6968170 6968515 -143815038 + L1M4 LINE L1 4101 4471 -1675 * 1518 227 41 49 chr11 6968500 6969032 -143814521 + L1M4 LINE L1 4747 5274 -872 341 343 7 7 chr11 6969146 6969292 -143814261 + L1M4 LINE L1 4557 4702 -1444 21 0 0 0 chr11 6969423 6969444 -143814109 + AT_rich Low_complexity Low_complexity 1 21 0 3989 164 44 16 chr11 6969820 6970267 -143813286 - L1MA9 LINE L1 -59 6253 5771 2065 112 0 26 chr11 6970267 6970570 -143812983 - AluSx SINE Alu -17 295 1 3989 164 44 16 chr11 6970570 6970937 -143812616 - L1MA9 LINE L1 -541 5771 5416 5141 70 14 0 chr11 6971123 6971790 -143811763 + L1PA8 LINE L1 5488 6163 -9 1189 274 34 62 chr11 6972436 6972966 -143810587 + MER69 DNA AcHobo 697 1211 -1315 1092 202 56 50 chr11 6972969 6973150 -143810403 + MER69 DNA AcHobo 2128 2307 -219 1376 163 48 0 chr11 6973150 6973402 -143810151 + L1PA16 LINE L1 5893 6156 -10 1092 202 56 50 chr11 6973402 6973616 -143809937 + MER69 DNA AcHobo 2307 2525 -1 262 339 51 0 chr11 6974460 6974578 -143808975 - L3 LINE CR1 -17 1560 1437 361 272 120 13 chr11 6974682 6974840 -143808713 + L1M4 LINE L1 4922 5096 -1050 453 337 32 40 chr11 6974857 6975109 -143808444 - MIR SINE MIR -6 256 7 261 239 113 7 chr11 6975112 6975254 -143808299 + L1M4 LINE L1 5104 5260 -886 374 378 54 14 chr11 6975358 6975580 -143807973 + L2 LINE L2 2868 3098 -215 549 264 147 78 chr11 6975834 6976270 -143807283 + MLT1J LTR MaLR 9 474 -37 569 297 109 32 chr11 6976467 6976878 -143806675 - L1ME LINE L1 -367 5797 5355 21 36 0 0 chr11 6976895 6976923 -143806630 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr11 6977074 6977110 -143806443 + AT_rich Low_complexity Low_complexity 1 36 0 487 288 161 35 chr11 6977335 6977758 -143805795 + L1MC4 LINE L1 4226 4701 -1445 22 0 0 0 chr11 6977813 6977835 -143805718 + AT_rich Low_complexity Low_complexity 1 22 0 455 291 200 15 chr11 6978259 6978734 -143804819 + L1MC4 LINE L1 5255 5817 -1991 2145 132 0 0 chr11 6979033 6979328 -143804225 - AluSx SINE Alu -15 297 3 1671 240 52 75 chr11 6979442 6980074 -143803479 - L1ME3A LINE L1 -9 6161 5547 1881 164 106 13 chr11 6980074 6980453 -143803100 + MLT2D LTR ERVL 1 414 0 1671 240 52 75 chr11 6980453 6980553 -143803000 - L1ME3A LINE L1 -623 5547 5446 447 286 117 34 chr11 6980583 6981110 -143802443 - L1M3 LINE L1 -329 5839 5255 582 311 53 19 chr11 6981166 6981372 -143802181 + MIR SINE MIR 2 214 -48 389 326 117 25 chr11 6981412 6981814 -143801739 - L1M3 LINE L1 -941 5205 4767 301 279 0 0 chr11 6982130 6982191 -143801362 + MER91B DNA MER1_type 1 61 -129 517 277 32 0 chr11 6982479 6982634 -143800919 + MLT1J1 LTR MaLR 1 160 -286 407 234 28 19 chr11 6982670 6982777 -143800776 + MER21B LTR ERV1 1 108 -755 1237 204 29 32 chr11 6982877 6983156 -143800397 + MER21B LTR ERV1 475 752 -111 495 285 140 10 chr11 6983184 6983384 -143800169 + MLT1J2 LTR MaLR 196 421 -29 241 405 72 27 chr11 6983885 6984258 -143799295 + L2 LINE L2 2850 3239 -33 188 271 0 0 chr11 6984399 6984447 -143799106 + L2 LINE L2 3263 3310 -3 747 245 164 2 chr11 6984899 6985334 -143798219 + L1MC4 LINE L1 6468 7072 -970 1066 278 16 0 chr11 6985336 6985649 -143797904 + L1MC4 LINE L1 7239 7556 -486 1797 140 52 3 chr11 6985649 6985935 -143797618 - AluJb SINE Alu -12 300 1 21 57 0 0 chr11 6986455 6986490 -143797063 + AT_rich Low_complexity Low_complexity 1 35 0 526 12 60 0 chr11 6987278 6987361 -143796192 + (TA)n Simple_repeat Simple_repeat 2 89 0 183 42 0 0 chr11 6988112 6988136 -143795417 + (CA)n Simple_repeat Simple_repeat 1 24 0 393 260 122 8 chr11 6988907 6989030 -143794523 + MIR SINE MIR 53 189 -73 3827 271 97 36 chr11 6989036 6990667 -143792886 - L2 LINE L2 0 3313 1551 783 254 15 5 chr11 6990667 6990872 -143792681 - MER63A DNA MER1_type -3 207 1 3827 271 97 36 chr11 6990872 6990985 -143792568 - L2 LINE L2 -1762 1551 1446 25 75 0 0 chr11 6991282 6991335 -143792218 + AT_rich Low_complexity Low_complexity 1 53 0 398 323 124 33 chr11 6991535 6992136 -143791417 + L2 LINE L2 1921 2665 -649 444 280 35 30 chr11 6992192 6992392 -143791161 + L1ME4a LINE L1 5635 5835 -286 350 254 88 18 chr11 6993464 6993578 -143789975 + L2 LINE L2 3151 3272 0 330 270 204 26 chr11 6993888 6994040 -143789513 + L2 LINE L2 2236 2414 -900 623 272 94 6 chr11 6994274 6994324 -143789229 - MIR SINE MIR -1 261 217 184 59 59 0 chr11 6994324 6994358 -143789195 + (TA)n Simple_repeat Simple_repeat 1 36 0 623 272 94 6 chr11 6994358 6994487 -143789066 - MIR SINE MIR -45 217 66 522 325 101 18 chr11 6994721 6995282 -143788271 - HAL1b LINE L1 -682 1686 361 698 365 100 9 chr11 6996531 6997092 -143786461 - L2 LINE L2 -338 2976 2365 920 346 64 10 chr11 6997914 6998322 -143785231 + LTR16A LTR ERVL 16 445 -5 29 28 0 0 chr11 6998849 6998885 -143784668 + AT_rich Low_complexity Low_complexity 1 36 0 344 270 92 46 chr11 7001268 7001442 -143782111 + MLT1K LTR MaLR 174 355 -233 507 194 0 43 chr11 7001548 7001734 -143781819 + GA-rich Low_complexity Low_complexity 1 178 0 182 130 39 26 chr11 7002705 7002782 -143780771 + (TTATA)n Simple_repeat Simple_repeat 3 80 0 487 341 59 15 chr11 7002809 7003217 -143780336 - L1ME LINE L1 -475 5687 5262 1569 92 8 0 chr11 7003299 7003538 -143780015 - L1MA5 LINE L1 -2 6298 6058 2423 45 0 3 chr11 7003607 7003899 -143779654 - AluY SINE Alu -20 291 1 184 298 85 0 chr11 7004269 7004316 -143779237 + L2 LINE L2 3168 3218 -54 667 62 21 0 chr11 7004669 7004766 -143778787 + AluY SINE Alu 213 311 0 300 313 45 18 chr11 7005101 7005213 -143778340 + L2 LINE L2 3152 3266 -6 32 57 0 0 chr11 7005275 7005328 -143778225 + AT_rich Low_complexity Low_complexity 1 53 0 985 145 0 13 chr11 7005703 7005862 -143777691 - FRAM SINE Alu -9 167 11 1427 328 76 57 chr11 7006040 7007740 -143775813 - L1ME LINE L1 -722 5442 3699 319 302 24 40 chr11 7007839 7007965 -143775588 + L2 LINE L2 3190 3313 0 451 354 62 11 chr11 7008105 7008379 -143775174 - HAL1b LINE L1 -759 589 302 1637 264 16 75 chr11 7009403 7010033 -143773520 + MLT1E LTR MaLR 1 593 0 213 39 0 0 chr11 7010392 7010418 -143773135 + (T)n Simple_repeat Simple_repeat 1 26 0 6530 16 10 1 chr11 7010454 7011250 -143772303 - L1HS LINE L1 0 6155 5353 349 23 0 0 chr11 7011247 7011290 -143772263 + L1P LINE L1 1945 1987 -4159 * 876 238 63 0 chr11 7011762 7011968 -143771585 + MIR SINE MIR 1 219 -43 207 0 0 0 chr11 7012505 7012528 -143771025 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 231 315 94 31 chr11 7013157 7013284 -143770269 - L2 LINE L2 -2 3270 3136 180 0 0 0 chr11 7014043 7014063 -143769490 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 637 292 31 122 chr11 7014251 7015017 -143768536 - L2 LINE L2 -1 3312 2616 227 229 38 84 chr11 7015215 7015346 -143768207 + LTR67 LTR ERVL 6 130 -427 * 1679 239 69 58 chr11 7015290 7015810 -143767743 + MLT1F LTR MaLR 7 532 -10 391 334 89 38 chr11 7015846 7016160 -143767393 + LTR67 LTR ERVL 117 446 -111 264 255 28 9 chr11 7016239 7016345 -143767208 - MLT1L LTR MaLR -16 599 492 586 296 11 0 chr11 7016468 7016647 -143766906 - MLT1L LTR MaLR -345 270 90 1036 309 146 6 chr11 7016726 7017247 -143766306 - L2 LINE L2 -683 2631 2038 189 0 0 0 chr11 7017481 7017502 -143766051 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 324 48 0 0 chr11 7018288 7018330 -143765223 + (CA)n Simple_repeat Simple_repeat 2 43 0 552 309 41 37 chr11 7018950 7019196 -143764357 + MIR SINE MIR 5 251 -11 709 261 77 18 chr11 7019416 7019638 -143763915 + MIR SINE MIR 14 248 -14 1973 142 3 0 chr11 7019845 7020151 -143763402 + AluSq SINE Alu 1 307 0 243 246 0 33 chr11 7020534 7020595 -143762958 + CT-rich Low_complexity Low_complexity 3 61 0 354 294 55 0 chr11 7021664 7021773 -143761780 + L3 LINE CR1 272 386 -1191 310 359 41 7 chr11 7022019 7022164 -143761389 + L3 LINE CR1 1067 1216 -361 431 253 116 50 chr11 7022179 7022420 -143761133 + MIR SINE MIR 2 258 -4 237 163 0 0 chr11 7022483 7022532 -143761021 + T-rich Low_complexity Low_complexity 1 49 0 1131 210 213 9 chr11 7022627 7022956 -143760597 - MSTD LTR MaLR 0 396 1 221 348 0 14 chr11 7023651 7023720 -143759833 + MIR SINE MIR 20 87 -175 459 252 122 22 chr11 7023722 7023944 -143759609 - MLT1H LTR MaLR 0 555 312 1030 196 14 9 chr11 7023958 7024177 -143759376 - MLT1A2 LTR MaLR 0 374 155 2457 122 3 0 chr11 7024186 7024555 -143758998 - L1PB1 LINE L1 -1 6150 5781 309 183 0 0 chr11 7024555 7024615 -143758938 + (TA)n Simple_repeat Simple_repeat 2 61 0 324 283 0 22 chr11 7024615 7024707 -143758846 + L1MC4 LINE L1 6614 6703 -1339 * 327 311 0 0 chr11 7024627 7024717 -143758836 - L1MC4 LINE L1 -1339 6703 6614 276 149 0 0 chr11 7024724 7024771 -143758782 + (TA)n Simple_repeat Simple_repeat 2 48 0 3613 131 6 4 chr11 7024771 7025675 -143757878 - L1P5 LINE L1 -360 5791 4888 2191 191 0 0 chr11 7025675 7026131 -143757422 + L1P5 LINE L1 4403 4858 -1288 517 164 207 7 chr11 7026136 7026276 -143757277 - MLT1A2 LTR MaLR -218 156 1 698 256 57 9 chr11 7026357 7026568 -143756985 - MLT1H LTR MaLR -326 223 3 288 293 50 0 chr11 7026571 7026670 -143756883 + MIR SINE MIR 86 189 -73 404 280 96 0 chr11 7026725 7026882 -143756671 - MIR SINE MIR -3 259 88 263 418 7 7 chr11 7027301 7027442 -143756111 + L2 LINE L2 2509 2649 -665 186 122 41 20 chr11 7027966 7028015 -143755538 + GA-rich Low_complexity Low_complexity 3 52 0 385 240 34 75 chr11 7028034 7028180 -143755373 + MIR SINE MIR 82 221 -41 306 0 0 0 chr11 7028180 7028214 -143755339 + (CA)n Simple_repeat Simple_repeat 2 35 0 243 169 68 34 chr11 7028265 7028324 -143755229 + L3 LINE CR1 1514 1574 -3 406 296 152 73 chr11 7028931 7029798 -143753755 - L1M2 LINE L1 -5538 1311 550 1852 243 109 46 chr11 7032280 7032906 -143750647 - L2 LINE L2 -339 2975 2311 408 342 32 11 chr11 7033020 7033207 -143750346 - L3 LINE CR1 -176 1401 1211 416 222 193 22 chr11 7033372 7033507 -143750046 + MER5A DNA MER1_type 29 186 -3 258 279 51 13 chr11 7033524 7033603 -143749950 - MIR SINE MIR -70 138 57 * 560 316 113 42 chr11 7033598 7034011 -143749542 - L3 LINE CR1 -588 989 547 563 162 19 195 chr11 7034011 7034221 -143749332 + MER5B DNA MER1_type 4 176 -2 334 224 241 9 chr11 7035667 7035783 -143747770 + MIR SINE MIR 2 144 -118 408 161 69 0 chr11 7035975 7036062 -143747491 + MIR SINE MIR 68 160 -102 606 154 173 0 chr11 7036076 7036232 -143747321 - MER53 DNA DNA -6 183 1 197 333 118 0 chr11 7036233 7036335 -143747218 + MIR SINE MIR 149 262 0 219 410 38 0 chr11 7037176 7037281 -143746272 - L2 LINE L2 -8 3264 3156 4373 273 66 29 chr11 7038459 7040124 -143743429 - L2 LINE L2 -2 3311 1586 213 271 0 17 chr11 7040165 7040224 -143743329 - L2 LINE L2 -1075 2239 2182 1873 157 68 6 chr11 7040224 7040562 -143742991 - MLT1A1 LTR MaLR 0 365 7 4279 244 136 21 chr11 7040569 7042073 -143741480 - L2 LINE L2 -1129 2185 510 381 293 126 18 chr11 7042186 7042408 -143741145 - L2 LINE L2 -826 2488 2243 270 377 66 0 chr11 7042465 7042571 -143740982 + MER5B DNA MER1_type 2 114 -64 389 309 50 53 chr11 7044646 7045025 -143738528 + L1 LINE L1 2970 3347 -2799 280 209 110 11 chr11 7045334 7045425 -143738128 - L1ME LINE L1 -477 5644 5545 281 219 14 17 chr11 7045448 7045536 -143738017 + L1 LINE L1 3604 3690 -2456 23 0 0 0 chr11 7045706 7045729 -143737824 + AT_rich Low_complexity Low_complexity 1 23 0 1726 216 43 11 chr11 7045808 7046252 -143737301 - L1MB8 LINE L1 -7 6171 5714 670 284 67 69 chr11 7046477 7046953 -143736600 - MLT1J LTR MaLR -31 480 6 25 0 0 0 chr11 7047265 7047290 -143736263 + AT_rich Low_complexity Low_complexity 1 25 0 390 21 0 0 chr11 7047909 7047956 -143735597 + (CA)n Simple_repeat Simple_repeat 2 48 0 28 29 0 0 chr11 7048242 7048277 -143735276 + AT_rich Low_complexity Low_complexity 1 35 0 2212 102 0 0 chr11 7048650 7048957 -143734596 - AluY SINE Alu 0 307 1 512 280 63 21 chr11 7049127 7049270 -143734283 + MIR SINE MIR 23 171 -91 203 361 0 15 chr11 7049401 7049531 -143734022 + CT-rich Low_complexity Low_complexity 4 131 0 703 291 60 98 chr11 7049614 7050095 -143733458 - L2 LINE L2 -4 3268 2806 204 156 22 0 chr11 7050405 7050450 -143733103 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 2476 40 0 0 chr11 7050870 7051166 -143732387 + L1PA8 LINE L1 5874 6169 -3 2228 103 10 3 chr11 7051406 7051706 -143731847 - AluSx SINE Alu -10 302 1 568 317 204 24 chr11 7052299 7052876 -143730677 + L2 LINE L2 1709 2389 -925 490 209 243 46 chr11 7052849 7053112 -143730441 + L2 LINE L2 2932 3246 -67 * 507 353 55 36 chr11 7053208 7053571 -143729982 + L2 LINE L2 2417 2786 -528 311 313 139 72 chr11 7053670 7053854 -143729699 + L2 LINE L2 2918 3088 -184 2049 110 0 28 chr11 7053854 7054177 -143729376 + AluSg SINE Alu 1 315 0 311 313 139 72 chr11 7054177 7054323 -143729230 + L2 LINE L2 3088 3271 -1 2182 115 17 136 chr11 7055017 7055496 -143728057 - MSTC LTR MaLR -6 422 1 326 325 156 12 chr11 7056226 7056386 -143727167 + L3 LINE CR1 206 388 -1189 193 246 145 29 chr11 7056691 7056760 -143726793 - MER5A DNA MER1_type -67 122 46 * 325 323 0 11 chr11 7056701 7056794 -143726759 + MER5A DNA MER1_type 98 189 0 2591 203 44 32 chr11 7057142 7057818 -143725735 + MER63C DNA MER1_type 1 684 -246 763 197 19 110 chr11 7057896 7058160 -143725393 + MER63C DNA MER1_type 691 930 0 26 0 0 0 chr11 7059946 7059972 -143723581 + AT_rich Low_complexity Low_complexity 1 26 0 294 29 0 0 chr11 7059998 7060033 -143723520 + (CA)n Simple_repeat Simple_repeat 2 36 0 210 128 0 0 chr11 7060042 7060081 -143723472 + (GA)n Simple_repeat Simple_repeat 1 39 0 306 210 101 67 chr11 7060106 7060225 -143723328 - HAL1 LINE L1 -106 2401 2279 310 195 12 49 chr11 7060237 7060319 -143723234 - L1MC4 LINE L1 -1339 6703 6625 26 30 0 0 chr11 7060655 7060688 -143722865 + AT_rich Low_complexity Low_complexity 1 33 0 255 271 14 0 chr11 7060792 7060862 -143722691 + MIR SINE MIR 85 155 -107 776 271 121 16 chr11 7061424 7061877 -143721676 - HAL1 LINE L1 -761 1746 1246 2555 102 19 11 chr11 7062256 7062628 -143720925 - THE1C LTR MaLR 0 375 1 10050 114 52 5 chr11 7062628 7064136 -143719417 - THE1C-int LTR MaLR 0 1580 1 2537 87 11 8 chr11 7064141 7064510 -143719043 - THE1C LTR MaLR -5 370 1 1039 153 58 36 chr11 7066367 7066590 -143716963 + L1MB3 LINE L1 5949 6176 -7 779 303 25 8 chr11 7067925 7068362 -143715191 - LTR33 LTR ERVL 0 521 14 187 225 167 25 chr11 7069518 7069638 -143713915 - MIR3 SINE MIR -61 147 11 1150 175 0 11 chr11 7071043 7071362 -143712191 - MLT1A1 LTR MaLR 0 365 1 2302 173 23 17 chr11 7071362 7071830 -143711723 - MLT1A1-int LTR MaLR 0 1735 1214 3209 173 14 53 chr11 7072120 7072813 -143710740 - MLT1A1-int LTR MaLR -1069 666 1 244 282 167 0 chr11 7072931 7073009 -143710544 + L2 LINE L2 3201 3291 -22 301 355 161 0 chr11 7073238 7073393 -143710160 - MIR SINE MIR -77 185 6 183 205 0 0 chr11 7073631 7073670 -143709883 + CT-rich Low_complexity Low_complexity 4 42 0 226 122 0 0 chr11 7073689 7073738 -143709815 - L1MC1 LINE L1 -2 6331 6283 243 0 0 0 chr11 7074148 7074175 -143709378 + (TG)n Simple_repeat Simple_repeat 1 27 0 * 345 24 0 0 chr11 7074174 7074216 -143709337 + (GA)n Simple_repeat Simple_repeat 1 42 0 441 194 241 36 chr11 7074333 7074586 -143708967 - L1MC5 LINE L1 -32 7929 7625 894 244 148 46 chr11 7074650 7075367 -143708186 - HAL1 LINE L1 -628 1879 1090 594 196 98 25 chr11 7076542 7076705 -143706848 - MER91B DNA MER1_type -2 188 14 303 326 42 0 chr11 7076755 7076850 -143706703 - L2 LINE L2 -18 3254 3156 478 267 0 8 chr11 7077066 7077197 -143706356 - MER94 DNA DNA 0 134 5 236 324 0 0 chr11 7077455 7077523 -143706030 - MLT1I LTR MaLR -244 165 98 484 336 8 0 chr11 7078673 7078801 -143704752 + L2 LINE L2 3141 3269 -3 875 290 126 9 chr11 7079087 7079522 -143704031 + LTR16C LTR ERVL 1 486 -5 459 318 76 21 chr11 7080662 7080898 -143702655 - MIR SINE MIR 0 262 14 470 304 154 0 chr11 7081105 7081332 -143702221 + MIR SINE MIR 1 262 0 197 328 0 16 chr11 7083309 7083373 -143700180 - L3 LINE CR1 -3 1574 1512 741 319 57 15 chr11 7083616 7084020 -143699533 + L2 LINE L2 2862 3282 -31 2172 132 0 10 chr11 7087218 7087522 -143696031 - AluSx SINE Alu -11 301 1 2407 86 0 0 chr11 7087533 7087834 -143695719 - AluY SINE Alu -10 301 1 832 167 7 7 chr11 7088084 7088234 -143695319 + AluSp/q SINE Alu 161 310 -3 26 50 0 0 chr11 7089921 7089961 -143693592 + AT_rich Low_complexity Low_complexity 1 40 0 23 68 0 0 chr11 7093025 7093069 -143690484 + AT_rich Low_complexity Low_complexity 1 44 0 300 230 24 103 chr11 7093107 7093233 -143690320 - L1ME3 LINE L1 -93 6138 6023 401 277 115 49 chr11 7093390 7093841 -143689712 - L1ME3 LINE L1 -346 5885 5405 555 265 34 20 chr11 7093899 7094197 -143689356 - L1ME3 LINE L1 -884 5331 5030 1672 182 32 46 chr11 7094208 7094581 -143688972 - MLT1A2 LTR MaLR -6 368 1 557 262 89 52 chr11 7094685 7095166 -143688387 - L1ME3 LINE L1 -1315 4900 4402 2085 120 10 0 chr11 7095226 7095517 -143688036 - AluSq SINE Alu -19 294 1 616 275 27 8 chr11 7095637 7095895 -143687658 - L1ME3 LINE L1 -2259 3956 3694 291 62 0 0 chr11 7096063 7096146 -143687407 - Alu SINE Alu 0 336 254 268 233 31 70 chr11 7096201 7096330 -143687223 - L1ME3 LINE L1 -4738 1658 1535 309 349 120 5 chr11 7096677 7096869 -143686684 - L1ME3 LINE L1 -5840 365 152 311 384 90 35 chr11 7097191 7097480 -143686073 + L2 LINE L2 2967 3271 -1 1366 171 65 92 chr11 7098426 7098893 -143684660 - MER66A LTR ERV1 0 478 97 783 196 4 92 chr11 7098954 7099183 -143684370 + MER63A DNA MER1_type 1 209 -1 583 281 40 37 chr11 7099802 7100130 -143683423 - L1ME3A LINE L1 -221 5932 5604 1130 298 107 40 chr11 7100238 7100698 -143682855 - L1ME3A LINE L1 -1874 4255 3827 183 80 0 0 chr11 7100698 7100723 -143682830 + (TG)n Simple_repeat Simple_repeat 2 26 0 1130 298 107 40 chr11 7100723 7101754 -143681799 - L1ME3A LINE L1 -2302 3827 2664 11407 32 1 1 chr11 7102015 7103457 -143680096 - L1PA2 LINE L1 -1493 4653 3212 7915 8 0 4 chr11 7103457 7105015 -143678538 + L1PA2 LINE L1 4624 6155 0 551 290 123 29 chr11 7105041 7105382 -143678171 - L1ME3A LINE L1 -3998 2312 1940 628 273 90 17 chr11 7105891 7106272 -143677281 - L1MEd LINE L1 -4862 1257 908 1287 189 56 50 chr11 7106939 7107334 -143676219 + L1ME1 LINE L1 5644 6028 -138 186 396 36 0 chr11 7107496 7107607 -143675946 - L2 LINE L2 -1683 1631 1517 1849 94 0 0 chr11 7107608 7107841 -143675712 - AluSq SINE Alu -21 292 60 1255 100 6 0 chr11 7107841 7108001 -143675552 - AluSq SINE Alu -152 161 1 234 357 14 14 chr11 7108113 7108256 -143675297 + MER117 DNA MER1_type 2 144 -53 1350 143 0 63 chr11 7108398 7108636 -143674917 + AluJb SINE Alu 68 290 -22 1310 264 33 24 chr11 7108928 7109379 -143674174 - LTR16A1 LTR ERVL -2 455 1 589 307 126 69 chr11 7110686 7111269 -143672284 - L2 LINE L2 -6 3266 2656 2883 213 37 43 chr11 7111361 7112247 -143671306 - L1ME1 LINE L1 -4 6162 5282 * 18096 189 10 16 chr11 7112216 7117383 -143666170 - L1PA13 LINE L1 -5 7596 2471 2123 319 6 9 chr11 7117455 7118135 -143665418 - L1PA13 LINE L1 -5936 1645 968 2528 124 8 3 chr11 7118201 7118563 -143664990 + THE1B LTR MaLR 1 364 0 1929 164 40 11 chr11 7118707 7119061 -143664492 - THE1B LTR MaLR 0 364 1 11519 95 8 4 chr11 7119061 7120635 -143662918 - THE1B-int LTR MaLR 0 1580 1 2237 105 44 36 chr11 7120635 7120996 -143662557 - THE1B LTR MaLR 0 364 1 2474 209 63 37 chr11 7121128 7121834 -143661719 - L1M4 LINE L1 -803 5343 4610 306 0 0 0 chr11 7121834 7121868 -143661685 + (CA)n Simple_repeat Simple_repeat 2 35 0 2474 209 63 37 chr11 7121868 7122021 -143661532 - L1M4 LINE L1 -1536 4610 4462 1066 259 41 12 chr11 7122024 7122368 -143661185 - L1MEc LINE L1 -5999 397 44 1518 307 87 60 chr11 7122368 7123479 -143660074 - L2 LINE L2 -809 2505 1365 227 210 16 32 chr11 7123702 7123764 -143659789 - L1ME4a LINE L1 -82 6039 5979 2127 124 0 10 chr11 7124138 7124436 -143659117 - AluSq SINE Alu -18 295 1 261 0 0 0 chr11 7125590 7125619 -143657934 + (T)n Simple_repeat Simple_repeat 1 29 0 1072 129 72 5 chr11 7126084 7126277 -143657276 + L1MB4 LINE L1 5975 6180 0 237 33 0 0 chr11 7126280 7126310 -143657243 + (CA)n Simple_repeat Simple_repeat 2 31 0 405 285 136 56 chr11 7126560 7126774 -143656779 - MIR SINE MIR -29 233 3 282 167 15 30 chr11 7129774 7129840 -143653713 + Charlie7 DNA MER1_type 41 105 -2507 1822 230 127 44 chr11 7129962 7130670 -143652883 + LTR41 LTR ERVL 1 767 -6 382 147 100 73 chr11 7130680 7130830 -143652723 - Charlie7 DNA MER1_type -28 2584 2431 276 202 73 65 chr11 7130851 7130975 -143652578 - Charlie7 DNA MER1_type -1891 721 597 21 0 0 0 chr11 7131035 7131056 -143652497 + AT_rich Low_complexity Low_complexity 1 21 0 291 271 110 8 chr11 7131113 7131231 -143652322 + L2 LINE L2 2630 2759 -555 236 241 203 45 chr11 7131827 7131960 -143651593 + MIR SINE MIR 109 262 0 218 286 0 0 chr11 7132353 7132423 -143651130 + L2 LINE L2 2994 3063 -209 228 258 90 22 chr11 7132600 7132689 -143650864 - MIR3 SINE MIR -28 180 86 228 232 85 24 chr11 7132812 7132894 -143650659 + L2 LINE L2 3182 3268 -4 281 347 146 22 chr11 7133713 7133981 -143649572 - L2 LINE L2 0 3313 3013 271 367 31 56 chr11 7133994 7134190 -143649363 - L2 LINE L2 -458 2856 2666 341 295 37 29 chr11 7134611 7134855 -143648698 - L1MDa LINE L1 -1435 5105 4860 308 304 88 35 chr11 7134855 7135082 -143648471 - L2 LINE L2 -23 3290 3052 778 277 126 47 chr11 7135162 7135755 -143647798 - L1MDa LINE L1 -1776 4764 4066 8505 35 0 0 chr11 7135755 7137550 -143646003 - L1PA3 LINE L1 0 6155 4357 778 277 126 47 chr11 7137550 7137909 -143645644 - L1MDa LINE L1 -2474 4066 3737 435 314 61 10 chr11 7138157 7138565 -143644988 - L1MDa LINE L1 -3208 3332 2904 2008 139 33 0 chr11 7138986 7139335 -143644218 - AluSx SINE Alu 0 359 1 251 242 95 32 chr11 7139584 7139839 -143643714 - L1MDa LINE L1 -3827 2713 2446 252 0 0 0 chr11 7139850 7139878 -143643675 + (T)n Simple_repeat Simple_repeat 1 28 0 265 394 0 15 chr11 7140009 7140141 -143643412 + L2 LINE L2 2562 2691 -623 921 342 138 35 chr11 7140230 7141267 -143642286 - L2 LINE L2 -839 2475 1332 319 277 77 108 chr11 7141355 7141485 -143642068 - MIR SINE MIR -105 157 32 268 278 48 63 chr11 7142400 7142526 -143641027 + L2 LINE L2 3149 3272 0 308 306 7 35 chr11 7143207 7143351 -143640202 - L1ME4a LINE L1 -112 6009 5870 237 287 105 27 chr11 7143500 7143796 -143639757 - L1ME4a LINE L1 -320 5801 5483 21 0 0 0 chr11 7143808 7143829 -143639724 + AT_rich Low_complexity Low_complexity 1 21 0 2365 32 39 39 chr11 7143973 7144281 -143639272 - AluY SINE Alu -3 308 1 282 270 37 42 chr11 7144392 7144607 -143638946 - L1ME4a LINE L1 -2341 5467 5254 820 222 74 17 chr11 7144764 7144994 -143638559 - MIR SINE MIR -2 260 18 3861 56 4 0 chr11 7145260 7145746 -143637807 - L1PA8 LINE L1 -11 6161 5674 3660 82 15 6 chr11 7145753 7146610 -143636943 - L1P3 LINE L1 -368 5786 4920 381 22 0 0 chr11 7146679 7146725 -143636828 + (CA)n Simple_repeat Simple_repeat 1 46 0 1926 145 0 6 chr11 7146805 7147122 -143636431 - L1PB1 LINE L1 -3 6148 5834 761 232 46 12 chr11 7147285 7147526 -143636027 + L1MB7 LINE L1 5935 6183 -1 257 333 25 0 chr11 7147581 7147743 -143635810 + Tigger8 DNA MER2_type 290 455 -211 311 322 80 36 chr11 7147944 7148245 -143635308 - L1ME4a LINE L1 -1325 4821 4508 2559 186 111 43 chr11 7148416 7149202 -143634351 - L1ME2 LINE L1 -9 6155 5317 1057 240 5 0 chr11 7149223 7149431 -143634122 - AluJb SINE Alu -20 292 84 358 162 0 15 chr11 7149446 7149514 -143634039 - FLAM SINE Alu -10 123 57 361 273 96 20 chr11 7149844 7150093 -143633460 - L1ME2 LINE L1 -2191 3955 3688 317 194 14 0 chr11 7150555 7150627 -143632926 + MER116 DNA Mariner 2 74 -6 8298 79 6 0 chr11 7150824 7152733 -143630820 - L1PA7 LINE L1 0 6154 4236 876 256 176 36 chr11 7152733 7153124 -143630429 + L2 LINE L2 2867 3312 -1 494 157 12 11 chr11 7153151 7153309 -143630244 + CT-rich Low_complexity Low_complexity 1 158 0 241 323 65 0 chr11 7153710 7153803 -143629750 + MIR SINE MIR 18 116 -92 246 255 0 0 chr11 7154079 7154130 -143629423 - L2 LINE L2 -23 3290 3240 259 275 66 22 chr11 7154148 7154239 -143629314 - MIR SINE MIR -30 232 138 451 237 61 9 chr11 7154719 7154833 -143628720 + MIR SINE MIR 24 143 -119 191 325 24 0 chr11 7155212 7155295 -143628258 - L2 LINE L2 -527 2787 2703 284 355 107 25 chr11 7156429 7156626 -143626927 - L3 LINE CR1 -227 1350 1138 5568 84 24 16 chr11 7156670 7157489 -143626064 + L1MA1 LINE L1 5473 6298 -4 22 56 0 0 chr11 7157521 7157557 -143625996 + AT_rich Low_complexity Low_complexity 1 36 0 990 328 177 16 chr11 7157603 7158292 -143625261 - L3 LINE CR1 -550 1027 228 687 268 97 68 chr11 7159131 7159556 -143623997 - L2 LINE L2 -695 2619 2183 246 325 44 100 chr11 7160569 7160729 -143622824 - MIR SINE MIR -70 192 42 483 221 177 12 chr11 7160794 7160962 -143622591 - HAL1 LINE L1 -93 2414 2275 285 51 0 0 chr11 7160962 7161001 -143622552 + (CA)n Simple_repeat Simple_repeat 1 39 0 483 221 177 12 chr11 7161001 7161154 -143622399 - HAL1 LINE L1 -232 2275 2040 2000 260 70 55 chr11 7161154 7162208 -143621345 + L2 LINE L2 2241 3313 0 330 26 0 0 chr11 7162240 7162279 -143621274 + (TG)n Simple_repeat Simple_repeat 2 40 0 755 154 18 35 chr11 7162396 7162565 -143620988 + L1PA13 LINE L1 5995 6160 -3 1772 274 90 64 chr11 7162586 7163088 -143620465 - L1M4 LINE L1 -1302 4844 4357 7292 40 0 11 chr11 7163088 7164220 -143619333 + L1PA4 LINE L1 5033 6154 -1 1772 274 90 64 chr11 7164220 7165717 -143617836 - L1M4 LINE L1 -1789 4357 2793 653 225 46 0 chr11 7165919 7166070 -143617483 + MER77 LTR ERV1 1 158 -447 601 158 0 0 chr11 7166077 7166172 -143617381 + MER77 LTR ERV1 511 605 0 1825 123 40 7 chr11 7168035 7168336 -143615217 - L1PA6 LINE L1 -58 6096 5786 4359 169 42 28 chr11 7168811 7169612 -143613941 - L1PA16 LINE L1 -1 6165 5334 1571 185 0 50 chr11 7169612 7169915 -143613638 + AluJb SINE Alu 1 288 -24 4359 169 42 28 chr11 7169915 7170149 -143613404 - L1PA16 LINE L1 -832 5334 5105 10552 219 30 18 chr11 7170292 7172255 -143611298 - L1PA15-16 LINE L1 -869 5980 4042 4938 32 0 0 chr11 7172255 7172839 -143610714 - L1PA4 LINE L1 0 6155 5572 10552 219 30 18 chr11 7172839 7173316 -143610237 - L1PA15-16 LINE L1 -2807 4042 3572 1092 117 0 0 chr11 7173316 7173478 -143610075 - L1PB1 LINE L1 -2 6149 5988 10552 219 30 18 chr11 7173478 7174354 -143609199 - L1PA15-16 LINE L1 -3277 3572 2627 1677 224 91 83 chr11 7174374 7175110 -143608443 - L1ME1 LINE L1 -5 6230 5489 4461 257 84 27 chr11 7175125 7176697 -143606856 - L1ME1 LINE L1 -806 5409 3928 1873 78 0 4 chr11 7176697 7176929 -143606624 - AluY SINE Alu -5 306 76 4461 257 84 27 chr11 7176929 7176989 -143606564 - L1ME1 LINE L1 -2287 3928 3873 15456 137 29 33 chr11 7176989 7179730 -143603823 + Tigger4(Zombi) DNA MER2_type 1 2731 0 4461 257 84 27 chr11 7179730 7180440 -143603113 - L1ME1 LINE L1 -2342 3873 2909 1083 246 71 16 chr11 7180545 7181132 -143602421 - L1ME1 LINE L1 -3594 2621 2031 2152 228 49 72 chr11 7181134 7181396 -143602157 - L1MEc LINE L1 -3009 3206 2940 1828 157 35 7 chr11 7181396 7181682 -143601871 + AluJo SINE Alu 1 294 -18 2152 228 49 72 chr11 7181682 7182704 -143600849 - L1MEc LINE L1 -3275 2940 1970 319 286 11 0 chr11 7182777 7182868 -143600685 - MLT1K LTR MaLR -330 258 167 1032 186 83 10 chr11 7183315 7183519 -143600034 - MER20 DNA MER1_type 0 219 1 222 150 0 0 chr11 7183758 7183798 -143599755 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 352 180 90 60 chr11 7184048 7184148 -143599405 - L2 LINE L2 -17 3296 3194 12249 182 54 28 chr11 7184149 7184651 -143598902 - L1MA4A LINE L1 -7 6998 6510 297 0 0 0 chr11 7184651 7184684 -143598869 + (TA)n Simple_repeat Simple_repeat 2 34 0 12249 182 54 28 chr11 7184684 7185477 -143598076 - L1MA4A LINE L1 -495 6510 5739 2928 6 0 0 chr11 7185477 7185795 -143597758 - AluYb8 SINE Alu 0 318 1 12249 182 54 28 chr11 7185795 7186239 -143597314 - L1MA4A LINE L1 -1266 5739 5308 2218 89 7 0 chr11 7186239 7186543 -143597010 - AluSp SINE Alu 0 306 1 12249 182 54 28 chr11 7186543 7188971 -143594582 - L1MA4A LINE L1 -1697 5308 2944 2290 114 0 0 chr11 7188971 7189270 -143594283 - AluSq SINE Alu -14 299 1 12249 182 54 28 chr11 7189270 7191849 -143591704 - L1MA4A LINE L1 -4061 2944 43 741 211 0 0 chr11 7191879 7192012 -143591541 - FLAM_A SINE Alu 0 133 1 235 235 102 31 chr11 7192232 7192330 -143591223 + L2 LINE L2 3164 3268 -4 938 258 67 0 chr11 7194343 7194583 -143588970 + MIR SINE MIR 7 262 0 1524 191 86 3 chr11 7194590 7194905 -143588648 - MER2 DNA MER2_type 0 344 4 2218 116 3 0 chr11 7197730 7198024 -143585529 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr11 7198501 7198524 -143585029 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 227 258 90 17 chr11 7199084 7199172 -143584381 + MIR SINE MIR 9 101 -107 534 367 25 108 chr11 7199174 7199722 -143583831 - MLT1J LTR MaLR -7 504 2 240 301 29 19 chr11 7199729 7199832 -143583721 + (CTCA)n Simple_repeat Simple_repeat 1 104 0 185 378 61 0 chr11 7199876 7199958 -143583595 - L2 LINE L2 -49 3223 3137 305 258 0 0 chr11 7201136 7201198 -143582355 + MLT1J2 LTR MaLR 389 450 0 584 308 94 26 chr11 7201529 7201763 -143581790 + MIR SINE MIR 9 258 -4 684 300 38 9 chr11 7405013 7405247 -143378306 + MIR SINE MIR 22 262 0 8065 22 0 1 chr11 7407768 7409320 -143374233 - L1PA3 LINE L1 -223 5932 4383 189 0 0 0 chr11 7410981 7411002 -143372551 + (CCTG)n Simple_repeat Simple_repeat 3 23 0 284 300 24 24 chr11 7411313 7411483 -143372070 + (CGAGG)n Simple_repeat Simple_repeat 5 174 0 1207 149 5 36 chr11 7413050 7413271 -143370282 - AluJo SINE Alu -98 214 1 1420 110 0 35 chr11 7413387 7413615 -143369938 - L1PA8A LINE L1 0 6131 5912 281 317 8 8 chr11 7414086 7414209 -143369344 + GA-rich Low_complexity Low_complexity 5 127 0 259 155 24 32 chr11 7414886 7415016 -143368537 + C-rich Low_complexity Low_complexity 1 128 0 449 298 137 6 chr11 7415821 7415982 -143367571 - MIR SINE MIR -35 227 46 1471 138 94 0 chr11 7416589 7416813 -143366740 + AluJo SINE Alu 11 255 -57 282 230 54 0 chr11 7416862 7416936 -143366617 + MIR SINE MIR 69 146 -116 683 330 67 28 chr11 7417378 7417766 -143365787 - L2 LINE L2 0 3272 2870 191 351 0 0 chr11 7417822 7417879 -143365674 - L2 LINE L2 -529 2785 2729 1688 246 93 35 chr11 7418665 7419375 -143364178 + L1M1 LINE L1 2286 3036 -4529 1435 109 5 0 chr11 7419403 7419587 -143363966 + AluSx SINE Alu 1 185 -127 4869 136 31 31 chr11 7419587 7420952 -143362601 + L1M2 LINE L1 4453 5813 -478 345 257 7 44 chr11 7422586 7422722 -143360831 + GA-rich Low_complexity Low_complexity 4 134 0 501 293 47 60 chr11 7422784 7422999 -143360554 + MIR SINE MIR 2 213 -49 297 264 85 12 chr11 7423306 7423445 -143360108 - MIR SINE MIR -52 156 2 299 310 38 32 chr11 7423990 7424148 -143359405 - L2 LINE L2 -35 3278 3120 279 192 128 0 chr11 7424206 7424284 -143359269 - MIR3 SINE MIR -37 171 84 1714 102 9 0 chr11 7424481 7424706 -143358847 - AluSq SINE Alu -86 227 1 329 320 19 39 chr11 7424737 7424943 -143358610 - L1ME LINE L1 -306 5815 5614 563 238 56 14 chr11 7425007 7425150 -143358403 + MIR SINE MIR 44 192 -70 189 345 0 0 chr11 7426293 7426351 -143357202 + MIR SINE MIR 201 258 -4 195 233 0 0 chr11 7427183 7427226 -143356327 + L2 LINE L2 3214 3256 -16 1316 111 79 14 chr11 7427657 7427873 -143355680 + MER4E LTR ERV1 536 765 -1 343 336 47 63 chr11 7428117 7428498 -143355055 - L1ME2 LINE L1 -297 5867 5493 189 121 0 0 chr11 7429163 7429196 -143354357 + (T)n Simple_repeat Simple_repeat 1 33 0 1652 29 10 0 chr11 7429198 7429406 -143354147 - L1PA2 LINE L1 -4 6151 5942 1634 161 4 11 chr11 7429512 7429773 -143353780 - AluJo SINE Alu -53 259 1 321 302 158 7 chr11 7431131 7431270 -143352283 + MIR3 SINE MIR 49 208 0 312 258 92 27 chr11 7431394 7431564 -143351989 + MIR SINE MIR 16 192 -70 219 257 204 0 chr11 7431644 7431757 -143351796 - MIR SINE MIR -12 250 115 1337 74 21 11 chr11 7432658 7432847 -143350706 + AluY SINE Alu 106 296 -15 387 370 61 0 chr11 7432867 7433032 -143350521 - L1M4 LINE L1 -2610 3536 3362 231 61 0 0 chr11 7433164 7433197 -143350356 + (GA)n Simple_repeat Simple_repeat 1 33 0 271 326 35 14 chr11 7435632 7435776 -143347777 - MIR SINE MIR -72 190 44 234 205 14 42 chr11 7435955 7436005 -143347548 + AluJ/monomer SINE Alu 1 31 -269 590 95 12 0 chr11 7436005 7436089 -143347464 - PABL_B LTR ERV1 0 667 583 1097 109 0 44 chr11 7436193 7436376 -143347177 - MER4E LTR ERV1 -244 522 348 1801 113 164 80 chr11 7436450 7436823 -143346730 + MER4A LTR ERV1 261 664 0 1700 154 19 70 chr11 7436823 7437154 -143346399 - MER4E LTR ERV1 -415 351 39 2309 90 3 0 chr11 7437154 7437442 -143346111 - AluSc SINE Alu -9 300 12 1700 154 19 70 chr11 7437442 7437480 -143346073 - MER4E LTR ERV1 -727 39 1 21 0 0 0 chr11 7437969 7437990 -143345563 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 7438222 7438243 -143345310 + (CAG)n Simple_repeat Simple_repeat 1 21 0 1110 70 0 0 chr11 7438327 7438456 -143345097 + AluY SINE Alu 1 129 -182 231 232 36 0 chr11 7440753 7440809 -143342744 + C-rich Low_complexity Low_complexity 5 62 0 693 215 41 6 chr11 7441086 7441258 -143342295 + MER96B DNA MER1_type? 1 178 -239 427 248 135 0 chr11 7441314 7441447 -143342106 + MER96B DNA MER1_type? 265 415 -2 199 280 84 56 chr11 7442455 7442562 -143340991 + MIR SINE MIR 102 211 -51 247 329 163 45 chr11 7442581 7442827 -143340726 + L3 LINE CR1 1294 1568 -9 2220 97 0 17 chr11 7443977 7444289 -143339264 - AluSx SINE Alu 0 307 1 304 215 0 15 chr11 7444289 7444354 -143339199 + MLT1H1 LTR MaLR 487 550 -5 357 277 15 29 chr11 7444737 7444874 -143338679 - MER5B DNA MER1_type -10 179 35 2488 73 0 3 chr11 7444959 7445262 -143338291 - AluY SINE Alu -9 302 1 420 204 250 66 chr11 7445344 7445406 -143338147 - MIR SINE MIR -12 250 201 2116 113 10 32 chr11 7445406 7445715 -143337838 - AluSx SINE Alu -10 302 1 420 204 250 66 chr11 7445715 7445848 -143337705 - MIR SINE MIR -61 201 19 307 224 168 19 chr11 7445946 7446053 -143337500 + L2 LINE L2 3150 3272 0 180 286 29 38 chr11 7446884 7446989 -143336564 + MIR SINE MIR 61 164 -98 203 366 188 0 chr11 7447309 7447421 -143336132 - MIR SINE MIR -73 189 57 820 287 12 16 chr11 7447936 7448183 -143335370 - MIR SINE MIR -1 261 16 459 157 0 0 chr11 7448213 7448302 -143335251 + (CA)n Simple_repeat Simple_repeat 1 89 0 256 340 0 0 chr11 7448997 7449100 -143334453 + (TG)n Simple_repeat Simple_repeat 1 103 0 1042 227 113 24 chr11 7450236 7450694 -143332859 - L1MEc LINE L1 -2624 3591 3093 * 1498 235 96 35 chr11 7450670 7451325 -143332228 - L1MEc LINE L1 -5052 1274 623 545 223 33 0 chr11 7451321 7451442 -143332111 - L1ME LINE L1 -368 5798 5674 * 2584 128 49 67 chr11 7451442 7451932 -143331621 + L1MD1 LINE L1 5693 6173 -69 563 170 116 27 chr11 7451932 7452044 -143331509 - FLAM_A SINE Alu -11 122 1 2584 128 49 67 chr11 7452044 7452108 -143331445 + L1MD1 LINE L1 6173 6237 -5 1726 161 0 14 chr11 7452264 7452556 -143330997 - AluSx SINE Alu -22 290 3 21 0 0 0 chr11 7452559 7452580 -143330973 + AT_rich Low_complexity Low_complexity 1 21 0 326 271 10 52 chr11 7452614 7452710 -143330843 + L1M LINE L1 5333 5424 -2384 331 295 77 11 chr11 7453037 7453220 -143330333 - HAL1 LINE L1 -855 1635 1441 21 0 0 0 chr11 7453271 7453292 -143330261 + AT_rich Low_complexity Low_complexity 1 21 0 6287 63 20 1 chr11 7453304 7454098 -143329455 - L1PA6 LINE L1 -2 6152 5344 4487 49 0 0 chr11 7454268 7454823 -143328730 - L1PA6 LINE L1 -887 5259 4705 502 277 26 46 chr11 7454882 7455191 -143328362 - L1MEd LINE L1 -1132 1358 971 2015 132 0 10 chr11 7455192 7455496 -143328057 - AluSx SINE Alu -11 301 1 261 0 0 0 chr11 7455526 7455555 -143327998 + (T)n Simple_repeat Simple_repeat 1 29 0 2250 80 0 10 chr11 7455839 7456141 -143327412 - AluY SINE Alu -12 299 1 2363 149 79 11 chr11 7456257 7456714 -143326839 - L1MA8 LINE L1 -2 6289 5802 1087 141 28 0 chr11 7456714 7456891 -143326662 + AluJb SINE Alu 2 183 -129 356 311 44 22 chr11 7457239 7457374 -143326179 + MIR3 SINE MIR 34 171 -37 211 217 22 0 chr11 7457701 7457747 -143325806 + MIR SINE MIR 173 219 -43 388 276 35 28 chr11 7457788 7457933 -143325620 + L2 LINE L2 2644 2789 -525 529 329 100 42 chr11 7458221 7458601 -143324952 + L1M4 LINE L1 4233 4634 -1512 212 186 34 17 chr11 7459045 7459104 -143324449 + A-rich Low_complexity Low_complexity 3 62 0 406 301 66 46 chr11 7459550 7459746 -143323807 + MIR3 SINE MIR 7 206 -2 190 315 54 95 chr11 7459860 7460155 -143323398 - L2 LINE L2 -22 3250 2968 318 269 19 46 chr11 7461615 7461723 -143321830 + MER91A DNA MER1_type 22 126 -70 248 163 61 0 chr11 7464324 7464373 -143319180 + L3 LINE CR1 1525 1576 -1 1565 160 0 42 chr11 7465978 7466266 -143317287 + AluJb SINE Alu 1 276 -36 242 203 0 29 chr11 7466272 7466341 -143317212 + GA-rich Low_complexity Low_complexity 4 70 0 1015 244 111 32 chr11 7466540 7466884 -143316669 - L2 LINE L2 -15 3298 2928 235 310 71 35 chr11 7467310 7467423 -143316130 + L3 LINE CR1 1291 1407 -170 380 302 191 41 chr11 7468532 7469049 -143314504 + L2 LINE L2 2378 2972 -342 247 401 139 22 chr11 7469167 7469583 -143313970 - L2 LINE L2 -1 3271 2807 252 291 97 37 chr11 7469598 7469732 -143313821 + HAL1 LINE L1 2 143 -2364 569 131 85 0 chr11 7469763 7469893 -143313660 - Charlie5 DNA MER1_type -27 2585 2445 209 321 98 18 chr11 7472050 7472162 -143311391 - L3 LINE CR1 -926 651 531 275 260 0 0 chr11 7472302 7472375 -143311178 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 271 253 26 148 chr11 7472413 7472642 -143310911 - L2 LINE L2 -74 3198 2998 1281 177 56 16 chr11 7472912 7473161 -143310392 + AluJo SINE Alu 1 259 -53 495 270 163 23 chr11 7474100 7474315 -143309238 + MLT1L LTR MaLR 371 615 0 212 200 0 0 chr11 7474881 7474916 -143308637 - MIR SINE MIR -63 145 111 410 208 171 20 chr11 7475161 7475310 -143308243 - MIR SINE MIR -48 214 50 701 303 57 10 chr11 7476835 7477173 -143306380 + L1ME LINE L1 5460 5812 -342 239 299 168 36 chr11 7477903 7478070 -143305483 + MER5A DNA MER1_type 1 189 0 240 35 0 0 chr11 7478174 7478203 -143305350 + (CA)n Simple_repeat Simple_repeat 2 30 0 605 221 12 81 chr11 7480132 7480304 -143303249 - MIR3 SINE MIR -39 169 10 244 344 33 25 chr11 7481349 7481471 -143302082 + L2 LINE L2 3101 3223 -49 3219 210 80 8 chr11 7481701 7482448 -143301105 + MER63C DNA MER1_type 21 821 -109 1870 117 0 7 chr11 7482452 7482733 -143300820 - AluJb SINE Alu -3 309 31 4449 64 0 9 chr11 7482733 7483283 -143300270 + PABL_A LTR ERV1 1 545 -115 736 266 117 38 chr11 7483787 7484103 -143299450 + MER102b DNA MER1_type 1 341 0 246 279 198 18 chr11 7484167 7484278 -143299275 - L2 LINE L2 -6 3266 3136 2061 202 155 4 chr11 7484941 7485411 -143298142 + MLT1G LTR MaLR 3 543 -47 2015 124 56 31 chr11 7486919 7487208 -143296345 + MLT1A1 LTR MaLR 1 302 -63 2149 87 0 10 chr11 7487208 7487497 -143296056 - AluSq SINE Alu -9 304 19 2015 124 56 31 chr11 7487497 7487563 -143295990 + MLT1A1 LTR MaLR 302 365 0 26 30 0 0 chr11 7488321 7488354 -143295199 + AT_rich Low_complexity Low_complexity 1 33 0 2369 76 3 0 chr11 7488374 7488678 -143294875 - AluSp SINE Alu -8 305 1 629 222 9 0 chr11 7489409 7489517 -143294036 - MER68 LTR ERV1 -1 561 453 1633 222 60 58 chr11 7489519 7490020 -143293533 - MER77 LTR ERV1 0 605 104 492 274 25 47 chr11 7490183 7490359 -143293194 + LTR16A1 LTR ERVL 240 383 -74 621 219 46 87 chr11 7490359 7490578 -143292975 - MER63A DNA MER1_type 0 210 1 492 274 25 47 chr11 7490578 7490650 -143292903 + LTR16A1 LTR ERVL 383 455 -2 441 299 30 12 chr11 7490903 7491067 -143292486 + HERVL LTR ERVL 3230 3396 -2258 984 231 38 14 chr11 7491544 7491820 -143291733 - MLT1H LTR MaLR -229 320 3 276 393 19 10 chr11 7491898 7492104 -143291449 + L2 LINE L2 2151 2358 -956 359 313 20 7 chr11 7493045 7493192 -143290361 - L1ME LINE L1 -350 5771 5623 326 340 115 13 chr11 7493323 7493479 -143290074 + MIR SINE MIR 1 172 -90 1206 247 53 51 chr11 7493482 7493915 -143289638 - L2 LINE L2 -1 3312 2879 3148 210 78 24 chr11 7493931 7495545 -143288008 - L1ME1 LINE L1 -135 6031 4333 3957 172 41 59 chr11 7495557 7495983 -143287570 - L1MB4 LINE L1 0 6180 5748 1908 113 0 3 chr11 7495983 7496267 -143287286 - AluSx SINE Alu -17 295 13 3957 172 41 59 chr11 7496267 7497189 -143286364 - L1MB4 LINE L1 -432 5748 4863 1829 192 3 6 chr11 7497189 7497501 -143286052 + AluJb SINE Alu 1 311 -1 3957 172 41 59 chr11 7497501 7497555 -143285998 - L1MB4 LINE L1 -1317 4863 4810 2282 125 0 0 chr11 7497838 7498150 -143285403 - AluSx SINE Alu 0 312 1 346 196 43 22 chr11 7500918 7501010 -143282543 + MER58A DNA MER1_type 42 135 0 264 297 91 29 chr11 7504569 7504744 -143278809 - L3 LINE CR1 -221 1356 1171 294 219 168 66 chr11 7505264 7505401 -143278152 - MIR SINE MIR -54 208 58 185 261 43 0 chr11 7505415 7505461 -143278092 + MIR SINE MIR 101 148 -60 1200 275 108 44 chr11 7505584 7506459 -143277094 - L2 LINE L2 -14 3299 2303 379 318 135 6 chr11 7508769 7508939 -143274614 - MIR3 SINE MIR -2 206 15 309 36 55 0 chr11 7510445 7510500 -143273053 + (TA)n Simple_repeat Simple_repeat 1 58 0 276 266 13 0 chr11 7511236 7511315 -143272238 - MIR3 SINE MIR -52 156 77 194 261 142 52 chr11 7512034 7512168 -143271385 + MIR3 SINE MIR 48 193 -15 211 224 0 35 chr11 7514217 7514275 -143269278 + CT-rich Low_complexity Low_complexity 4 59 0 1813 155 11 14 chr11 7514394 7514678 -143268875 + AluJo SINE Alu 14 296 -16 847 217 17 23 chr11 7514989 7515164 -143268389 - MER5A DNA MER1_type -7 182 9 566 211 8 0 chr11 7517025 7517148 -143266405 + L1MA8 LINE L1 6166 6289 -2 256 260 208 19 chr11 7517209 7517363 -143266190 - L3 LINE CR1 -102 1475 1293 490 291 150 30 chr11 7517376 7517476 -143266077 - MIR SINE MIR 0 262 175 2010 106 0 72 chr11 7517476 7517797 -143265756 - AluY SINE Alu -13 298 1 490 291 150 30 chr11 7517797 7517930 -143265623 - MIR SINE MIR -87 175 1 303 327 53 7 chr11 7517944 7518152 -143265401 - L3 LINE CR1 -344 1233 964 257 303 56 0 chr11 7518497 7518586 -143264967 - MIR3 SINE MIR -33 175 82 227 267 43 60 chr11 7518953 7519069 -143264484 + MIR SINE MIR 27 140 -68 778 154 0 0 chr11 7519197 7519314 -143264239 - FRAM SINE Alu -39 137 21 262 233 27 48 chr11 7519480 7519626 -143263927 + (GGGTG)n Simple_repeat Simple_repeat 3 145 0 223 171 0 0 chr11 7519894 7519935 -143263618 + (TG)n Simple_repeat Simple_repeat 2 42 0 322 312 101 0 chr11 7522415 7522553 -143261000 - MIR SINE MIR -21 241 90 403 244 130 0 chr11 7522944 7523059 -143260494 - MER94 DNA DNA -2 132 3 266 348 101 18 chr11 7523926 7524153 -143259400 - MIR SINE MIR -4 258 13 182 239 87 0 chr11 7524233 7524279 -143259274 + L2 LINE L2 3223 3272 0 315 154 67 67 chr11 7527594 7527698 -143255855 - L1ME4a LINE L1 -3 6118 6015 1574 79 4 35 chr11 7527758 7527985 -143255568 - AluSg/x SINE Alu -2 308 89 969 274 62 22 chr11 7528085 7528486 -143255067 - L1ME4a LINE L1 -213 5908 5492 2835 202 97 68 chr11 7528761 7529760 -143253793 + L1M3e LINE L1 978 2025 -5012 2321 121 0 6 chr11 7529760 7530075 -143253478 + AluSq SINE Alu 1 313 0 2835 202 97 68 chr11 7530075 7530216 -143253337 + L1M3e LINE L1 2025 2160 -4877 469 125 45 23 chr11 7530353 7530441 -143253112 + AluJ/FRAM SINE Alu 223 312 0 306 0 0 0 chr11 7530455 7530489 -143253064 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 688 236 40 5 chr11 7530489 7530679 -143252874 + L1ME1 LINE L1 3516 3715 -2431 * 3616 209 67 14 chr11 7530678 7531317 -143252236 + L1ME1 LINE L1 4434 5038 -1296 2404 92 0 16 chr11 7531317 7531633 -143251920 + AluY SINE Alu 1 311 0 3616 209 67 14 chr11 7531633 7532094 -143251459 + L1ME1 LINE L1 5038 5473 -861 2022 119 17 30 chr11 7532094 7532396 -143251157 + AluSx SINE Alu 1 298 -14 3616 209 67 14 chr11 7532396 7532945 -143250608 + L1ME1 LINE L1 5473 6332 -2 573 292 50 12 chr11 7533295 7533456 -143250097 - MIR3 SINE MIR -22 186 20 281 291 97 48 chr11 7533651 7533816 -143249737 - MIR3 SINE MIR -10 198 26 359 372 78 37 chr11 7535010 7535096 -143248457 + L2 LINE L2 1805 1886 -1428 2640 36 7 0 chr11 7535096 7535399 -143248154 - AluY SINE Alu -6 305 1 359 372 78 37 chr11 7535399 7535850 -143247703 + L2 LINE L2 1886 2364 -950 300 300 89 48 chr11 7536137 7536430 -143247123 + L2 LINE L2 2179 2483 -831 533 262 41 35 chr11 7536456 7536628 -143246925 + MLT1K LTR MaLR 69 241 -347 229 198 48 111 chr11 7536773 7536899 -143246654 + LTR67 LTR ERVL 432 549 -8 218 309 62 0 chr11 7537009 7537090 -143246463 + L2 LINE L2 2662 2747 -567 498 286 90 108 chr11 7537114 7537441 -143246112 - L2 LINE L2 -337 2977 2646 306 73 0 0 chr11 7537441 7537482 -143246071 + (CTCA)n Simple_repeat Simple_repeat 2 42 0 498 286 90 108 chr11 7537482 7537888 -143245665 - L2 LINE L2 -668 2646 2257 2095 98 4 4 chr11 7537955 7538230 -143245323 + AluSx SINE Alu 1 275 -37 342 266 65 43 chr11 7538388 7538527 -143245026 + HAL1 LINE L1 231 372 -2135 1499 147 4 25 chr11 7538529 7538774 -143244779 + AluJo SINE Alu 1 240 -72 321 87 0 0 chr11 7538840 7538886 -143244667 + AluJo SINE Alu 247 292 -10 618 299 43 9 chr11 7539027 7539238 -143244315 - MIR SINE MIR -44 218 1 605 263 81 84 chr11 7539301 7539636 -143243917 - L2 LINE L2 -809 2505 2172 983 318 84 44 chr11 7539685 7539843 -143243710 - L2 LINE L2 -2620 694 544 1748 108 43 49 chr11 7539843 7540178 -143243375 - AluY SINE Alu 0 311 1 983 318 84 44 chr11 7540178 7540364 -143243189 - L2 LINE L2 -2770 544 367 2430 95 3 0 chr11 7540364 7540670 -143242883 + AluSc SINE Alu 1 307 -2 983 318 84 44 chr11 7540670 7540943 -143242610 - L2 LINE L2 -2947 367 51 2221 123 0 3 chr11 7541176 7541477 -143242076 + AluSx SINE Alu 1 300 -12 387 273 21 103 chr11 7542237 7542431 -143241122 - MIR3 SINE MIR -30 178 1 2338 86 3 17 chr11 7542682 7542983 -143240570 - AluSc SINE Alu -12 297 1 1656 223 14 6 chr11 7544001 7544364 -143239189 + MLT2D LTR ERVL 1 366 -48 331 324 89 51 chr11 7544658 7545028 -143238525 + LTR67 LTR ERVL 36 419 -138 233 226 48 16 chr11 7545001 7545063 -143238490 + MIR SINE MIR 83 146 -116 * 899 309 112 11 chr11 7546350 7546726 -143236827 + LTR16C LTR ERVL 78 491 0 390 194 10 51 chr11 7546900 7546998 -143236555 + MLT1K LTR MaLR 479 572 -16 855 207 66 10 chr11 7547442 7547640 -143235913 + ORSL DNA AcHobo 1 209 -66 1334 280 74 11 chr11 7548640 7549100 -143234453 + L2 LINE L2 2824 3312 -1 238 49 0 0 chr11 7549249 7549290 -143234263 + Alu SINE Alu 259 299 0 237 206 315 22 chr11 7549308 7549400 -143234153 - L2 LINE L2 -4 3309 3191 198 250 71 0 chr11 7549704 7549760 -143233793 + L2 LINE L2 2688 2747 -567 1864 197 28 23 chr11 7550332 7550722 -143232831 + MSTD LTR MaLR 1 392 -4 21 0 0 0 chr11 7551353 7551374 -143232179 + AT_rich Low_complexity Low_complexity 1 21 0 8293 40 16 0 chr11 7551374 7553101 -143230452 - L1PA5 LINE L1 -7 6147 4405 241 292 0 0 chr11 7553297 7553369 -143230184 + MIR SINE MIR 191 262 0 2194 125 3 0 chr11 7554390 7554694 -143228859 - AluSq SINE Alu -8 305 1 4813 57 24 3 chr11 7555918 7556497 -143227056 + LTR10C LTR ERV1 1 591 0 198 0 0 0 chr11 7557006 7557028 -143226525 + (T)n Simple_repeat Simple_repeat 1 22 0 255 304 38 25 chr11 7557057 7557136 -143226417 + MIR SINE MIR 27 106 -102 1583 237 37 37 chr11 7557737 7558168 -143225385 + MLT1J1 LTR MaLR 16 446 0 22241 32 2 0 chr11 7558180 7560823 -143222730 + L1P LINE L1 1770 4418 -1728 22 0 0 0 chr11 7561225 7561247 -143222306 + AT_rich Low_complexity Low_complexity 1 22 0 6314 125 8 11 chr11 7561643 7563009 -143220544 - L1PA15 LINE L1 -4 6161 4795 3378 210 82 19 chr11 7563404 7564284 -143219269 - L1ME1 LINE L1 -17 6218 5252 1982 146 0 3 chr11 7564284 7564585 -143218968 - AluJb SINE Alu -12 300 1 3378 210 82 19 chr11 7564585 7564809 -143218744 - L1ME1 LINE L1 -983 5252 5044 301 262 37 19 chr11 7564914 7565021 -143218532 - HAL1b LINE L1 -49 1299 1191 699 83 4 78 chr11 7565125 7565392 -143218161 + AluSc SINE Alu 1 309 0 21 0 0 0 chr11 7565457 7565478 -143218075 + AT_rich Low_complexity Low_complexity 1 21 0 373 283 117 33 chr11 7566259 7566763 -143216790 - L1ME1 LINE L1 -1227 4988 4437 405 293 40 30 chr11 7566868 7567066 -143216487 - L1ME1 LINE L1 -1924 4291 4092 313 344 83 6 chr11 7567089 7567246 -143216307 - L1ME1 LINE L1 -2275 3940 3772 931 133 7 0 chr11 7567249 7567384 -143216169 + AluJb SINE Alu 6 141 -171 43 20 0 0 chr11 7567406 7567456 -143216097 + AT_rich Low_complexity Low_complexity 1 50 0 232 222 0 28 chr11 7567500 7567572 -143215981 + (TA)n Simple_repeat Simple_repeat 2 71 0 1741 99 4 0 chr11 7567661 7567894 -143215659 - L1PA11 LINE L1 -2 6172 5939 26 0 0 0 chr11 7568179 7568205 -143215348 + AT_rich Low_complexity Low_complexity 1 26 0 489 195 0 0 chr11 7568271 7568353 -143215200 + Tigger4(Zombi) DNA MER2_type 1 82 -2649 3728 94 16 0 chr11 7568358 7568867 -143214686 + Tigger4(Zombi) DNA MER2_type 2212 2728 -3 28 0 0 0 chr11 7568935 7568963 -143214590 + AT_rich Low_complexity Low_complexity 1 28 0 684 228 115 48 chr11 7569085 7569422 -143214131 + MLT1I LTR MaLR 50 435 -11 242 250 17 0 chr11 7569440 7569500 -143214053 - L1ME1 LINE L1 -3129 3086 3026 300 204 0 112 chr11 7569532 7569630 -143213923 - L1MC4 LINE L1 -1339 6703 6617 * 301 202 0 101 chr11 7569542 7569641 -143213912 + L1MC4 LINE L1 6614 6702 -1340 218 182 39 13 chr11 7569648 7569725 -143213828 + (TA)n Simple_repeat Simple_repeat 1 79 0 423 159 47 29 chr11 7569749 7569919 -143213634 + (TATATG)n Simple_repeat Simple_repeat 4 176 0 455 33 16 0 chr11 7570103 7570164 -143213389 + (TG)n Simple_repeat Simple_repeat 2 63 0 305 219 47 0 chr11 7571203 7571267 -143212286 + MIR3 SINE MIR 112 178 -30 268 241 23 69 chr11 7571321 7571383 -143212170 + MIR3 SINE MIR 111 169 -39 2429 135 25 3 chr11 7571383 7571739 -143211814 + THE1B LTR MaLR 1 364 0 268 241 23 69 chr11 7571739 7571763 -143211790 + MIR3 SINE MIR 169 193 -15 216 182 0 0 chr11 7571813 7571857 -143211696 + (CA)n Simple_repeat Simple_repeat 2 45 0 384 271 146 7 chr11 7573806 7573957 -143209596 - MIR3 SINE MIR -19 189 18 5450 171 58 13 chr11 7574923 7576892 -143206661 - L1MB8 LINE L1 -13 6165 4109 1012 276 116 10 chr11 7576935 7577454 -143206099 - L1ME1 LINE L1 -4929 1467 894 3056 224 49 60 chr11 7577474 7578284 -143205269 - MER21B LTR ERV1 -51 812 12 2017 262 100 20 chr11 7578300 7578461 -143205092 - L1ME1 LINE L1 -5523 873 726 1384 127 103 0 chr11 7578461 7578674 -143204879 + MER46A DNA MER2_type 1 235 -1 2017 262 100 20 chr11 7578674 7579301 -143204252 - L1ME1 LINE L1 -5670 726 22 592 337 128 36 chr11 7579312 7579756 -143203797 + L2 LINE L2 2286 2687 -585 1496 129 44 22 chr11 7579756 7579981 -143203572 + MER30 DNA MER1_type 1 230 0 592 337 128 36 chr11 7579981 7580443 -143203110 + L2 LINE L2 2687 3272 0 450 218 53 53 chr11 7580910 7581043 -143202510 + L2 LINE L2 3179 3311 -2 * 796 247 38 0 chr11 7581041 7581227 -143202326 - MIR SINE MIR 0 262 70 201 74 0 0 chr11 7581250 7581277 -143202276 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1594 201 0 28 chr11 7581331 7581650 -143201903 - AluJo SINE Alu -2 310 1 350 315 117 19 chr11 7581835 7582048 -143201505 - MIR SINE MIR -26 236 3 527 276 30 0 chr11 7582264 7582398 -143201155 + MER5A DNA MER1_type 52 189 0 366 85 0 0 chr11 7582507 7582566 -143200987 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 22 35 0 0 chr11 7582611 7582640 -143200913 + AT_rich Low_complexity Low_complexity 1 29 0 452 229 34 8 chr11 7582666 7582784 -143200769 - L1ME4a LINE L1 -24 6097 5977 * 2813 229 52 22 chr11 7582782 7583547 -143200006 - L1ME3A LINE L1 0 6170 5383 877 280 106 16 chr11 7584220 7584606 -143198947 - L1ME4a LINE L1 -206 5915 5495 469 285 92 88 chr11 7584760 7585426 -143198127 - L1ME4a LINE L1 -1113 5033 4362 2430 71 0 19 chr11 7585426 7585735 -143197818 - AluY SINE Alu -8 303 1 469 285 92 88 chr11 7585735 7585985 -143197568 - L1ME4a LINE L1 -1784 4362 4114 320 345 16 51 chr11 7586015 7586270 -143197283 - L1ME4a LINE L1 -2168 3978 3733 462 313 33 0 chr11 7587112 7587262 -143196291 + MIR SINE MIR 21 175 -87 552 253 39 52 chr11 7588959 7589113 -143194440 + MER91A DNA MER1_type 4 155 -41 1071 250 68 78 chr11 7589213 7589761 -143193792 - MLT1H LTR MaLR 0 549 8 309 185 0 0 chr11 7591749 7591803 -143191750 + L2 LINE L2 3217 3270 -2 216 321 108 20 chr11 7592038 7592209 -143191344 + MIR SINE MIR 30 212 -50 23 0 0 0 chr11 7592873 7592896 -143190657 + AT_rich Low_complexity Low_complexity 1 23 0 574 238 76 43 chr11 7593766 7593899 -143189654 + MIR SINE MIR 60 202 -60 423 205 0 0 chr11 7593899 7593977 -143189576 + MER116 DNA Mariner 1 78 -2 574 238 76 43 chr11 7593977 7594028 -143189525 + MIR SINE MIR 202 250 -12 2770 20 0 0 chr11 7594364 7594669 -143188884 - AluY SINE Alu -6 305 1 288 65 78 0 chr11 7594767 7594844 -143188709 + (TA)n Simple_repeat Simple_repeat 2 84 0 197 318 11 57 chr11 7594947 7595035 -143188518 - L3 LINE CR1 -257 1320 1237 * 207 338 48 48 chr11 7595011 7595156 -143188397 - L2 LINE L2 -6 3266 3122 1385 189 18 49 chr11 7595284 7595569 -143187984 + AluJo SINE Alu 3 278 -34 195 69 0 0 chr11 7595573 7595602 -143187951 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4745 167 48 57 chr11 7595651 7596561 -143186992 - L1MB8 LINE L1 0 6178 5261 1818 176 0 19 chr11 7596561 7596873 -143186680 - AluJo SINE Alu -5 307 2 4745 167 48 57 chr11 7596873 7598266 -143185287 - L1MB8 LINE L1 -917 5261 3804 447 19 0 0 chr11 7598297 7598349 -143185204 + (TG)n Simple_repeat Simple_repeat 2 53 0 2312 122 0 0 chr11 7598422 7598734 -143184819 + AluSx SINE Alu 1 312 0 411 306 95 12 chr11 7598766 7599008 -143184545 - L2 LINE L2 -459 2855 2594 354 287 70 60 chr11 7599040 7599340 -143184213 - MLT1K LTR MaLR -6 582 280 433 149 0 0 chr11 7599557 7599624 -143183929 - AluJ/FLAM SINE Alu -223 89 23 3424 57 94 0 chr11 7600027 7600452 -143183101 + MER4C LTR ERV1 1 465 0 371 327 148 30 chr11 7600475 7600974 -143182579 - L3 LINE CR1 -320 1257 700 1276 182 36 61 chr11 7600974 7601303 -143182250 - L1MC5 LINE L1 -30 7931 7611 1895 126 0 11 chr11 7601398 7601661 -143181892 - AluSq SINE Alu -53 260 1 1164 246 98 37 chr11 7601819 7602339 -143181214 + L2 LINE L2 2632 3213 -100 2410 88 3 0 chr11 7602339 7602646 -143180907 + AluSg SINE Alu 1 308 -2 1164 246 98 37 chr11 7602646 7602753 -143180800 + L2 LINE L2 3213 3312 -1 319 243 81 0 chr11 7602847 7602958 -143180595 + L1ME4a LINE L1 5764 5883 -238 1692 41 15 0 chr11 7602995 7603191 -143180362 + L1PA5 LINE L1 5956 6154 0 339 248 128 8 chr11 7603200 7603317 -143180236 + L1ME4a LINE L1 5990 6120 -1 2118 122 26 0 chr11 7604062 7604366 -143179187 + AluSx SINE Alu 1 312 0 338 183 0 12 chr11 7604892 7604974 -143178579 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 3530 174 17 2 chr11 7605532 7606131 -143177422 - MER90 LTR ERV1 -6 608 1 388 292 124 52 chr11 7606589 7606822 -143176731 - MIR SINE MIR -6 256 7 228 284 0 54 chr11 7606859 7606933 -143176620 - L2 LINE L2 -559 2755 2686 2361 94 7 0 chr11 7607503 7607802 -143175751 - AluSx SINE Alu -11 301 1 1667 168 11 11 chr11 7607855 7608135 -143175418 - AluJo SINE Alu -7 305 26 492 308 0 0 chr11 7608383 7608529 -143175024 + L1ME3A LINE L1 5713 5858 -312 520 123 0 105 chr11 7608598 7608712 -143174841 - L1MB3 LINE L1 -18 6165 6064 248 318 182 20 chr11 7609211 7609607 -143173946 - L2 LINE L2 -862 2452 1993 290 311 38 57 chr11 7609758 7609864 -143173689 + L2 LINE L2 3155 3258 -14 311 274 77 17 chr11 7610167 7610284 -143173269 + L3 LINE CR1 1358 1481 -96 4630 158 38 42 chr11 7610337 7611164 -143172389 - L1MB8 LINE L1 -6 6172 5343 2203 113 0 10 chr11 7611164 7611466 -143172087 - AluSx SINE Alu -13 299 1 4630 158 38 42 chr11 7611466 7611498 -143172055 - L1MB8 LINE L1 -835 5343 5312 2708 26 3 3 chr11 7611498 7611807 -143171746 - AluY SINE Alu -2 309 1 4630 158 38 42 chr11 7611807 7612212 -143171341 - L1MB8 LINE L1 -866 5312 4897 201 296 0 0 chr11 7612213 7612257 -143171296 + L3 LINE CR1 1531 1574 -3 4162 145 90 9 chr11 7612804 7613468 -143170085 - MER72 LTR ERV1 0 722 5 1498 155 7 58 chr11 7613887 7614197 -143169356 - AluY SINE Alu -1 310 17 1152 242 37 0 chr11 7664207 7664480 -143119073 - L1ME LINE L1 -362 5808 5526 * 5111 138 9 1 chr11 7664479 7665275 -143118278 + L1PA16 LINE L1 5364 6165 -1 261 180 0 0 chr11 7665274 7665324 -143118229 - L1ME LINE L1 -625 5539 5487 * 1241 238 53 3 chr11 7665449 7665752 -143117801 - L1ME2 LINE L1 -268 6691 6374 835 191 0 7 chr11 7665764 7665911 -143117642 + FRAM SINE Alu 6 151 -25 271 191 0 0 chr11 7665924 7665971 -143117582 - L1ME2 LINE L1 -595 6364 6318 1627 214 28 87 chr11 7666010 7666576 -143116977 + MER34 LTR ERV1 10 542 0 1498 134 46 21 chr11 7667356 7667639 -143115914 - MER4-int LTR ERV1 -1455 5143 4854 * 8300 112 53 42 chr11 7667631 7668189 -143115364 + LTR8A-int LTR ERV1 5120 5670 -928 3877 164 51 19 chr11 7668189 7668891 -143114662 + LTR8A LTR ERV1 1 725 -2 8300 112 53 42 chr11 7668891 7669793 -143113760 + LTR8A-int LTR ERV1 5670 6596 -2 3776 114 23 46 chr11 7669801 7670415 -143113138 + MER4A LTR ERV1 1 600 0 440 342 55 29 chr11 7671510 7671998 -143111555 + L2 LINE L2 1334 1834 -1480 697 245 185 79 chr11 7672010 7672654 -143110899 - HAL1 LINE L1 0 2507 1780 2196 145 0 0 chr11 7672654 7672965 -143110588 - AluSx SINE Alu -1 311 1 697 245 185 79 chr11 7672965 7673029 -143110524 - HAL1 LINE L1 -727 1780 1724 2035 142 0 0 chr11 7674651 7674954 -143108599 + AluSx SINE Alu 1 303 -9 221 215 0 13 chr11 7675019 7675098 -143108455 + GA-rich Low_complexity Low_complexity 1 78 0 2640 42 0 3 chr11 7676337 7676644 -143106909 + AluY SINE Alu 1 306 -5 2536 174 22 0 chr11 7676654 7677067 -143106486 - MSTB LTR MaLR -4 422 1 243 291 0 23 chr11 7677312 7677398 -143106155 + (CA)n Simple_repeat Simple_repeat 1 84 0 6078 168 40 27 chr11 7679210 7680062 -143103491 + L1MC2 LINE L1 4407 5247 -1097 2011 92 0 0 chr11 7680062 7680313 -143103240 + AluSc SINE Alu 40 290 -19 6078 168 40 27 chr11 7680313 7681276 -143102277 + L1MC2 LINE L1 5247 6261 -83 1252 147 20 33 chr11 7681276 7681521 -143102032 - L1MA10 LINE L1 -7 6327 6086 6078 168 40 27 chr11 7681521 7681585 -143101968 + L1MC2 LINE L1 6261 6323 -21 315 80 0 0 chr11 7681576 7681626 -143101927 + L1MC3 LINE L1 7575 7624 -161 * 1752 266 103 22 chr11 7681658 7682691 -143100862 - L1ME2 LINE L1 -877 6064 4949 2309 93 0 3 chr11 7682753 7683044 -143100509 - AluSq SINE Alu -21 292 3 511 263 158 7 chr11 7683761 7683913 -143099640 + MER5A DNA MER1_type 9 183 -6 2606 59 0 0 chr11 7683945 7684250 -143099303 - AluY SINE Alu -6 305 1 443 333 31 26 chr11 7684287 7684479 -143099074 - L1ME2 LINE L1 -5408 1015 823 41 72 0 0 chr11 7684627 7684710 -143098843 + AT_rich Low_complexity Low_complexity 1 83 0 417 117 130 0 chr11 7684710 7684787 -143098766 - L1MB2 LINE L1 -7 6164 6078 3147 198 40 60 chr11 7684794 7684853 -143098700 - L1MC4a LINE L1 0 7808 7749 761 227 0 0 chr11 7684853 7684985 -143098568 + FLAM_A SINE Alu 2 133 0 3147 198 40 60 chr11 7684985 7685729 -143097824 - L1MC4a LINE L1 -59 7749 7021 867 252 31 24 chr11 7685735 7685989 -143097564 - L1ME3A LINE L1 -5 6165 5910 260 277 264 34 chr11 7686218 7686366 -143097187 - L1ME3A LINE L1 -2073 5735 5554 184 333 46 11 chr11 7687501 7687588 -143095965 - MIR3 SINE MIR -5 203 114 542 264 149 27 chr11 7687770 7688115 -143095438 - LTR16A LTR ERVL -4 446 21 264 75 0 0 chr11 7688516 7688556 -143094997 - L1MA9 LINE L1 -3 6309 6270 300 269 239 13 chr11 7688557 7688791 -143094762 + L2 LINE L2 2275 2561 -753 26 0 0 0 chr11 7689353 7689379 -143094174 + AT_rich Low_complexity Low_complexity 1 26 0 10047 167 15 98 chr11 7689385 7692567 -143090986 + L1M2a LINE L1 6 2930 -4238 277 326 30 52 chr11 7693598 7693831 -143089722 + MLT1K LTR MaLR 316 543 -45 261 243 68 14 chr11 7694803 7694877 -143088676 - MIR SINE MIR -78 130 53 197 273 189 35 chr11 7696136 7696279 -143087274 - MIR3 SINE MIR -18 190 26 413 209 51 10 chr11 7696279 7696434 -143087119 - LTR36 LTR ERV1 -1 610 395 256 287 34 72 chr11 7697799 7697916 -143085637 - L1MC/D LINE L1 -1972 5836 5716 2350 90 10 0 chr11 7697916 7698216 -143085337 - AluSp SINE Alu -10 303 1 256 287 34 72 chr11 7698216 7698391 -143085162 - L1MC/D LINE L1 -2092 5716 5555 665 155 14 27 chr11 7698742 7698890 -143084663 + MER4C LTR ERV1 1 146 -319 327 290 25 49 chr11 7699310 7699472 -143084081 - HERVL LTR ERVL -1460 4194 4037 742 321 36 24 chr11 7699844 7700180 -143083373 - HERVL LTR ERVL -4335 661 322 1969 178 23 25 chr11 7700214 7700607 -143082946 - MSTB1 LTR MaLR 0 432 41 6606 68 0 0 chr11 7700607 7701637 -143081916 - L1PA5 LINE L1 -1 6153 5101 10090 81 9 1 chr11 7701637 7703075 -143080478 + L1PA5 LINE L1 3651 5100 -1046 30 0 0 0 chr11 7703284 7703314 -143080239 + AT_rich Low_complexity Low_complexity 1 30 0 325 306 47 80 chr11 7703432 7703707 -143079846 - L1M4 LINE L1 -3366 2780 2515 254 259 63 28 chr11 7703783 7703926 -143079627 - L1ME3A LINE L1 0 6170 6023 364 264 47 39 chr11 7706121 7706250 -143077303 - L2 LINE L2 0 3313 3184 291 114 0 0 chr11 7706253 7706297 -143077256 + (TA)n Simple_repeat Simple_repeat 1 44 0 237 173 53 0 chr11 7706310 7706385 -143077168 + (TA)n Simple_repeat Simple_repeat 2 80 0 363 167 0 0 chr11 7706467 7706533 -143077020 + (TA)n Simple_repeat Simple_repeat 1 66 0 477 331 94 20 chr11 7708664 7708963 -143074590 - L1ME3A LINE L1 -253 5868 5548 2525 178 9 38 chr11 7709860 7710412 -143073141 - LTR27 LTR ERV1 -98 538 3 441 289 41 84 chr11 7711244 7711660 -143071893 + MLT1J LTR MaLR 109 506 -5 24 0 0 0 chr11 7711670 7711694 -143071859 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr11 7711818 7711842 -143071711 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 7711907 7711930 -143071623 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 7712532 7712555 -143070998 + AT_rich Low_complexity Low_complexity 1 23 0 22952 35 0 0 chr11 7712557 7716134 -143067419 + L1PA2 LINE L1 2572 6154 -1 334 267 9 0 chr11 7716199 7716304 -143067249 - L1ME LINE L1 -461 5660 5555 32 91 0 0 chr11 7716429 7716517 -143067036 + AT_rich Low_complexity Low_complexity 1 88 0 1789 155 3 32 chr11 7716960 7717270 -143066283 + AluJb SINE Alu 1 301 -11 4747 142 55 16 chr11 7717298 7718165 -143065388 - MER4D LTR ERV1 0 903 3 606 215 35 14 chr11 7718295 7718439 -143065114 + MER93b LTR ERV1 1 147 -226 3270 59 25 7 chr11 7718491 7718931 -143064622 + LTR7 LTR ERV1 1 448 -2 18732 99 69 14 chr11 7718933 7722051 -143061502 + HERVH LTR ERV1 1 3290 -4423 3084 124 8 6 chr11 7722041 7722542 -143061011 + HERVH LTR ERV1 3492 3993 -3720 * 4121 139 1 3 chr11 7722544 7723207 -143060346 + HERVH LTR ERV1 4488 5149 -2564 1325 124 18 9 chr11 7723208 7723426 -143060127 + HERVH LTR ERV1 5600 5819 -1894 2393 75 48 3 chr11 7723426 7723799 -143059754 + HERVH LTR ERV1 7324 7713 0 3480 58 0 7 chr11 7723799 7724250 -143059303 + LTR7 LTR ERV1 1 448 -2 453 215 15 15 chr11 7724250 7724380 -143059173 + MER93b LTR ERV1 244 373 0 770 198 80 0 chr11 7724917 7725079 -143058474 - MER5A DNA MER1_type -2 187 13 312 192 0 90 chr11 7725122 7725200 -143058353 + MIR SINE MIR 183 253 -9 486 136 62 0 chr11 7725639 7725720 -143057833 + LTR54B LTR ERV1 1 86 -412 3145 121 0 0 chr11 7725720 7726198 -143057355 + MER41B LTR ERV1 1 478 -157 1264 188 88 40 chr11 7726195 7726764 -143056789 - LTR48B LTR ERV1 -21 614 1 * 324 192 0 0 chr11 7726764 7726835 -143056718 + MER57A LTR ERV1 331 401 -2 2141 129 7 0 chr11 7726917 7727227 -143056326 + AluSq SINE Alu 1 312 -1 2401 130 35 21 chr11 7727712 7728143 -143055410 - LTR23 LTR ERV1 0 437 1 5328 164 31 22 chr11 7728240 7729626 -143053927 - LTR23-int LTR ERV1 -101 5699 4415 2887 43 13 5 chr11 7729793 7730169 -143053384 + LTR10C LTR ERV1 1 379 -212 2133 143 35 20 chr11 7730172 7730578 -143052975 + LTR3 LTR ERVK 5 416 -16 23955 132 20 13 chr11 7730640 7734894 -143048659 + HERVK3 LTR ERVK 2 4226 -1719 1506 130 41 0 chr11 7734894 7735140 -143048413 + L1PA15 LINE L1 5910 6165 0 23955 132 20 13 chr11 7735140 7735162 -143048391 + HERVK3 LTR ERVK 4226 4246 -1699 216 0 0 0 chr11 7735162 7735186 -143048367 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23955 132 20 13 chr11 7735186 7735875 -143047678 + HERVK3 LTR ERVK 4246 5238 -707 2311 84 0 3 chr11 7735875 7736171 -143047382 - AluY SINE Alu -16 295 1 23955 132 20 13 chr11 7736171 7736540 -143047013 + HERVK3 LTR ERVK 5238 5603 -342 653 106 0 0 chr11 7736536 7736630 -143046923 + HERVK3 LTR ERVK 7150 7243 0 * 2137 165 14 17 chr11 7736634 7737047 -143046506 + LTR3 LTR ERVK 5 416 -16 1688 65 9 0 chr11 7737069 7737286 -143046267 + LTR10C LTR ERV1 373 591 0 1189 175 37 20 chr11 7737325 7737571 -143045982 + MLT1B LTR MaLR 3 252 -138 521 195 65 0 chr11 7737566 7737689 -143045864 + LTR23 LTR ERV1 11 141 -296 * 2500 72 0 3 chr11 7737783 7738088 -143045465 - AluY SINE Alu -7 304 1 668 209 36 0 chr11 7738730 7738926 -143044627 - L1ME3A LINE L1 -219 5951 5749 799 114 15 0 chr11 7739021 7739152 -143044401 + LTR23 LTR ERV1 167 299 -138 749 189 0 0 chr11 7739160 7739287 -143044266 + FLAM_C SINE Alu 2 128 -5 614 196 0 29 chr11 7739304 7739442 -143044111 + LTR23 LTR ERV1 293 426 -11 632 193 21 21 chr11 7739548 7739688 -143043865 + LTR23 LTR ERV1 298 437 0 793 161 35 0 chr11 7739688 7739831 -143043722 + MLT1B LTR MaLR 240 387 -3 1845 171 34 0 chr11 7739993 7740286 -143043267 - AluJo SINE Alu -9 303 1 1019 189 137 107 chr11 7740545 7741041 -143042512 + MER67D LTR ERV1 1 511 -3 681 224 63 40 chr11 7741093 7741316 -143042237 + MER110A LTR ERV1 17 244 -224 261 318 56 19 chr11 7741643 7741750 -143041803 - MLT-int LTR MaLR -1219 516 406 345 47 0 0 chr11 7742086 7742129 -143041424 + (TG)n Simple_repeat Simple_repeat 2 44 0 476 280 109 71 chr11 7742211 7742820 -143040733 - L2 LINE L2 -5 3308 2653 861 125 0 0 chr11 7743345 7743465 -143040088 + FLAM_C SINE Alu 6 125 -18 439 282 213 23 chr11 7743465 7743681 -143039872 - MIR SINE MIR -5 257 1 1911 194 94 2 chr11 7744507 7744976 -143038577 + Charlie1b DNA MER1_type 6 517 -6 504 276 115 21 chr11 7746187 7746403 -143037150 - MIR SINE MIR -4 258 30 320 351 98 65 chr11 7746446 7746639 -143036914 - L2 LINE L2 -5 3267 3057 470 46 15 0 chr11 7746639 7746704 -143036849 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 320 351 98 65 chr11 7746704 7746835 -143036718 - L2 LINE L2 -215 3057 2932 460 86 57 0 chr11 7746936 7747006 -143036547 + U6 snRNA snRNA 1 74 -33 354 356 86 29 chr11 7747265 7747543 -143036010 - L2 LINE L2 -565 2749 2456 24 100 0 0 chr11 7747666 7747746 -143035807 + AT_rich Low_complexity Low_complexity 1 80 0 2277 128 0 0 chr11 7747796 7748108 -143035445 + AluSx SINE Alu 1 312 0 1912 268 36 11 chr11 7748442 7749241 -143034312 + L1M2 LINE L1 16 920 -5929 6890 121 9 6 chr11 7749341 7750697 -143032856 - L1P2 LINE L1 -571 5583 4226 5432 153 34 26 chr11 7750797 7751927 -143031626 - HERVH LTR ERV1 -6156 1557 420 1034 246 84 8 chr11 7752027 7752385 -143031168 - L1MDa LINE L1 -4653 1887 1503 981 167 0 32 chr11 7752385 7752571 -143030982 + MER46A DNA MER2_type 1 180 -56 589 188 57 17 chr11 7752575 7752751 -143030802 - L1 LINE L1 -1537 4609 4427 5784 157 41 61 chr11 7752762 7754104 -143029449 + L1P LINE L1 3014 4276 -1870 7796 16 0 0 chr11 7754104 7755182 -143028371 - L1PA3 LINE L1 0 6155 5078 5784 157 41 61 chr11 7755182 7755923 -143027630 + L1P LINE L1 4276 5030 -1116 243 0 0 0 chr11 7755943 7755970 -143027583 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2051 117 25 0 chr11 7755972 7756246 -143027307 - AluSx SINE Alu -31 281 1 1238 199 4 0 chr11 7756246 7756513 -143027040 - L1 LINE L1 -922 5288 5021 * 2095 225 52 2 chr11 7756511 7757120 -143026433 - L1 LINE L1 -4543 1598 959 224 30 30 0 chr11 7757447 7757480 -143026073 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 706 300 38 54 chr11 7757577 7758023 -143025530 - LTR16A1 LTR ERVL 0 457 19 326 264 27 18 chr11 7760812 7760922 -143022631 + MIR SINE MIR 74 184 -78 186 359 34 60 chr11 7761261 7761495 -143022058 - L2 LINE L2 -902 2412 2185 254 361 23 23 chr11 7761609 7761739 -143021814 + L2 LINE L2 2921 3050 -263 251 360 75 6 chr11 7761875 7762036 -143021517 + MIR SINE MIR 86 257 -5 216 135 0 0 chr11 7764476 7764513 -143019040 + (TG)n Simple_repeat Simple_repeat 2 38 0 504 176 0 0 chr11 7764620 7764722 -143018831 + GA-rich Low_complexity Low_complexity 3 104 0 401 279 53 37 chr11 7764758 7764948 -143018605 + L1M4 LINE L1 3257 3449 -2697 3459 228 60 44 chr11 7765273 7765988 -143017565 - L1M4 LINE L1 -717 5461 4758 2049 130 11 0 chr11 7765988 7766272 -143017281 - AluSx SINE Alu -25 287 1 3459 228 60 44 chr11 7766272 7766988 -143016565 - L1M4 LINE L1 -1420 4758 4012 4799 179 29 13 chr11 7767004 7768934 -143014619 + L1PB4 LINE L1 4193 6151 -5 1145 270 97 6 chr11 7768950 7769435 -143014118 + L1 LINE L1 2315 2843 -3303 40012 32 30 2 chr11 7769446 7775429 -143008124 + L1PA2 LINE L1 1 6154 -1 6674 204 71 32 chr11 7775441 7776293 -143007260 + L1 LINE L1 2839 3656 -2490 2347 109 0 0 chr11 7776293 7776595 -143006958 + AluSq SINE Alu 1 302 -11 6674 204 71 32 chr11 7776595 7776711 -143006842 + L1 LINE L1 3656 3766 -2380 1763 174 10 10 chr11 7776711 7777021 -143006532 + AluJo SINE Alu 1 310 -2 6674 204 71 32 chr11 7777021 7778098 -143005455 + L1 LINE L1 3766 4965 -1181 409 309 65 29 chr11 7779070 7779305 -143004248 - MIR SINE MIR -17 245 3 204 331 71 47 chr11 7780162 7780289 -143003264 - L2 LINE L2 -829 2485 2356 2122 107 3 13 chr11 7780292 7780592 -143002961 - AluSx SINE Alu -15 297 1 2047 134 3 19 chr11 7782051 7782358 -143001195 - AluSx SINE Alu -10 302 1 2244 182 8 0 chr11 7784428 7784830 -142998723 + MLT1C LTR MaLR 1 405 -62 2005 170 28 19 chr11 7784982 7785486 -142998067 + MLT2A2 LTR ERVL 1 508 -46 6763 36 21 0 chr11 7785486 7786354 -142997199 + L1P LINE L1 3720 4605 -1541 547 282 81 33 chr11 7786373 7786652 -142996901 - L1MEc LINE L1 -4772 1347 1020 246 266 79 14 chr11 7786663 7786802 -142996751 - L1MEc LINE L1 -5099 971 824 231 333 0 0 chr11 7787626 7787686 -142995867 - L2 LINE L2 -257 3056 2997 319 224 0 0 chr11 7787769 7787827 -142995726 + L2 LINE L2 3244 3301 -12 4316 71 0 17 chr11 7787969 7788546 -142995007 + L1PA8 LINE L1 5603 6169 -3 345 238 153 0 chr11 7788593 7788753 -142994800 - MER20B DNA MER1_type -4 215 31 2102 99 34 0 chr11 7789360 7789653 -142993900 + AluY SINE Alu 1 303 -8 5712 135 113 5 chr11 7790023 7790638 -142992915 + Tigger3b DNA MER2_type 1 548 -2480 1689 168 7 11 chr11 7790638 7790912 -142992641 + AluJb SINE Alu 1 273 -39 5712 135 113 5 chr11 7790912 7791407 -142992146 + Tigger3b DNA MER2_type 548 1231 0 849 281 165 5 chr11 7792372 7792803 -142990750 + LTR33 LTR ERVL 1 500 -21 40 101 0 0 chr11 7792870 7793008 -142990545 + AT_rich Low_complexity Low_complexity 1 138 0 183 100 0 0 chr11 7793081 7793111 -142990442 + (TA)n Simple_repeat Simple_repeat 2 31 0 706 107 157 112 chr11 7793111 7793204 -142990349 + Tigger3(Golem) DNA MER2_type 2397 2484 -545 1784 167 0 11 chr11 7793204 7793480 -142990073 + AluJb SINE Alu 1 273 -39 706 107 157 112 chr11 7793480 7793628 -142989925 + Tigger3(Golem) DNA MER2_type 2484 2649 -380 1041 123 0 0 chr11 7793628 7793807 -142989746 + (TA)n Simple_repeat Simple_repeat 2 180 0 370 341 54 48 chr11 7794226 7794477 -142989076 + L2 LINE L2 1959 2214 -1100 1140 200 82 53 chr11 7794477 7794832 -142988721 - MLT1A1 LTR MaLR 0 365 1 370 341 54 48 chr11 7794832 7794911 -142988642 + L2 LINE L2 2214 2291 -1023 2339 78 14 0 chr11 7795439 7795609 -142987944 - AluY SINE Alu -12 299 122 333 0 0 0 chr11 7795609 7795646 -142987907 + (TG)n Simple_repeat Simple_repeat 2 38 0 2339 78 14 0 chr11 7795646 7795770 -142987783 - AluY SINE Alu -189 122 1 3103 218 32 5 chr11 7795912 7796664 -142986889 - L1MB8 LINE L1 -1 6177 5406 1152 307 50 12 chr11 7797308 7797790 -142985763 + MLT1H1 LTR MaLR 1 500 -55 498 342 58 38 chr11 7797790 7798378 -142985175 + L2 LINE L2 2665 3313 0 31422 60 2 12 chr11 7799314 7803617 -142979936 + L1PA5 LINE L1 258 4517 -1629 7678 20 0 0 chr11 7803617 7804674 -142978879 + L1PA3 LINE L1 5129 6184 0 7010 42 33 0 chr11 7804675 7805444 -142978109 + L1PA5 LINE L1 4510 5252 -902 200 59 29 0 chr11 7805444 7805478 -142978075 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 7010 42 33 0 chr11 7805478 7806318 -142977235 + L1PA5 LINE L1 5252 6149 -5 1565 68 10 14 chr11 7806686 7806893 -142976660 + AluY SINE Alu 106 311 0 252 306 217 0 chr11 7807209 7807366 -142976187 + MIR SINE MIR 1 191 -71 788 282 28 5 chr11 7807369 7807582 -142975971 + MIR SINE MIR 20 237 -25 195 293 17 0 chr11 7807553 7807611 -142975942 + L2 LINE L2 3213 3271 -1 * 23 0 0 0 chr11 7807732 7807755 -142975798 + AT_rich Low_complexity Low_complexity 1 23 0 295 280 90 70 chr11 7809670 7809870 -142973683 + L2 LINE L2 2926 3129 -143 25 31 0 0 chr11 7810150 7810182 -142973371 + AT_rich Low_complexity Low_complexity 1 32 0 231 153 68 0 chr11 7810348 7810407 -142973146 - L1MA7 LINE L1 0 6291 6229 4792 160 10 29 chr11 7810407 7811270 -142972283 + LTR57-int LTR ERVL 4495 5341 -2 361 60 20 0 chr11 7811272 7811322 -142972231 + LTR57 LTR ERVL 1 51 -360 1375 221 56 20 chr11 7811323 7811821 -142971732 + L1ME1 LINE L1 4859 5374 -772 543 139 16 16 chr11 7811820 7811949 -142971604 + L1MDa LINE L1 2424 2552 -3988 * 37 81 0 0 chr11 7811979 7812065 -142971488 + AT_rich Low_complexity Low_complexity 1 86 0 259 159 32 0 chr11 7812065 7812128 -142971425 + L1MDa LINE L1 2488 2552 -3988 2434 240 47 6 chr11 7812197 7812917 -142970636 + L1ME1 LINE L1 5417 6166 0 21 0 0 0 chr11 7814026 7814047 -142969506 + AT_rich Low_complexity Low_complexity 1 21 0 319 325 114 42 chr11 7814331 7814568 -142968985 - L3 LINE CR1 -318 1259 1006 332 316 107 25 chr11 7814594 7814790 -142968763 + MIR SINE MIR 21 232 -30 5406 203 5 5 chr11 7815188 7816273 -142967280 + L1PA12 LINE L1 610 1707 -5874 234 0 0 0 chr11 7816276 7816302 -142967251 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9987 200 11 11 chr11 7816307 7818623 -142964930 + L1PA12 LINE L1 2454 4770 -2814 2102 202 259 18 chr11 7819425 7820270 -142963283 + L1MA9 LINE L1 3324 4372 -1774 1994 138 17 3 chr11 7820298 7820588 -142962965 + AluSg SINE Alu 6 299 -11 2271 123 0 0 chr11 7820591 7820901 -142962652 + AluSg SINE Alu 1 310 0 642 222 31 43 chr11 7820901 7821150 -142962403 + L1MA4 LINE L1 6060 6295 -5 593 210 13 49 chr11 7821154 7821222 -142962331 + L1MA9 LINE L1 4356 4425 -1721 1947 159 7 7 chr11 7821222 7821523 -142962030 - AluSx SINE Alu -11 301 1 593 210 13 49 chr11 7821523 7821756 -142961797 + L1MA9 LINE L1 4425 4808 -1338 * 3075 147 16 96 chr11 7821747 7822488 -142961065 + L1MB3 LINE L1 5416 6097 -86 1177 126 16 16 chr11 7822488 7822662 -142960891 - AluSp SINE Alu -1 312 136 438 114 34 0 chr11 7822662 7822750 -142960803 + L1MB2 LINE L1 6078 6168 -3 2151 203 30 59 chr11 7822774 7823379 -142960174 + L1MA9 LINE L1 4794 5415 -897 16118 49 6 2 chr11 7823379 7826158 -142957395 + L1PA5 LINE L1 3375 6154 0 2151 203 30 59 chr11 7826158 7826485 -142957068 + L1MA9 LINE L1 5415 5750 -562 186 71 0 0 chr11 7826485 7826513 -142957040 + (TG)n Simple_repeat Simple_repeat 2 29 0 2151 203 30 59 chr11 7826513 7826982 -142956571 + L1MA9 LINE L1 5750 6128 -184 2073 125 6 6 chr11 7826982 7827317 -142956236 - L1MA3 LINE L1 0 6305 5971 2151 203 30 59 chr11 7827317 7827464 -142956089 + L1MA9 LINE L1 6128 6278 -34 2294 215 70 25 chr11 7827482 7828278 -142955275 - L1MDa LINE L1 -4692 1848 1017 4292 161 29 29 chr11 7828769 7829552 -142954001 + LTR39 LTR ERV1 1 783 0 788 310 20 55 chr11 7829577 7829977 -142953576 - L1MDa LINE L1 -6138 402 17 278 306 34 41 chr11 7830235 7830382 -142953171 + MIR SINE MIR 100 245 -17 22 70 0 0 chr11 7832362 7832405 -142951148 + AT_rich Low_complexity Low_complexity 1 43 0 573 250 87 23 chr11 7832418 7832590 -142950963 - MIR SINE MIR -74 188 6 1693 192 39 0 chr11 7833233 7833514 -142950039 + AluJb SINE Alu 1 292 -20 1913 138 4 4 chr11 7833522 7833798 -142949755 + AluSx SINE Alu 1 276 -36 2169 105 10 0 chr11 7834136 7834432 -142949121 + AluSg SINE Alu 1 299 -11 937 219 0 9 chr11 7834855 7835065 -142948488 + L1PA14 LINE L1 3264 3471 -2675 6807 171 19 18 chr11 7835067 7836690 -142946863 + L1PA14 LINE L1 3988 5608 -553 2330 145 6 11 chr11 7836690 7837056 -142946497 + THE1B LTR MaLR 1 364 0 6807 171 19 18 chr11 7837056 7837143 -142946410 + L1PA14 LINE L1 5608 5693 -468 2348 122 11 27 chr11 7837143 7837513 -142946040 + THE1B LTR MaLR 1 364 0 6807 171 19 18 chr11 7837513 7837942 -142945611 + L1PA14 LINE L1 5693 6157 -4 2080 142 0 3 chr11 7837952 7838254 -142945299 + AluSx SINE Alu 1 301 -11 255 125 0 0 chr11 7838254 7838294 -142945259 + (TA)n Simple_repeat Simple_repeat 1 40 0 1008 265 53 11 chr11 7838474 7838930 -142944623 + L1M4 LINE L1 4673 5147 -999 784 218 74 10 chr11 7838932 7839209 -142944344 + MLT1A2 LTR MaLR 2 390 0 369 216 144 0 chr11 7839209 7839320 -142944233 + L1M4 LINE L1 5140 5266 -880 695 256 58 0 chr11 7839351 7839523 -142944030 + MER58A DNA MER1_type 43 224 0 289 229 0 12 chr11 7839527 7839610 -142943943 + L1M LINE L1 5263 5344 -822 412 263 136 28 chr11 7839623 7840047 -142943506 - L1M4b LINE L1 -5127 1820 1332 9531 206 85 2 chr11 7840383 7842344 -142941209 + L1M2 LINE L1 4 2127 -4722 440 333 71 71 chr11 7842353 7842679 -142940874 - MER72 LTR ERV1 -346 376 48 2527 84 21 32 chr11 7842679 7843058 -142940495 - THE1C LTR MaLR 0 375 1 440 333 71 71 chr11 7843058 7843082 -142940471 - MER72 LTR ERV1 -673 49 26 6008 173 50 10 chr11 7843113 7844931 -142938622 + L1P4 LINE L1 3868 5759 -406 5220 116 69 42 chr11 7844932 7846068 -142937485 - MER11A LTR ERVK 0 1266 1 471 63 0 0 chr11 7846070 7846133 -142937420 + L1P4 LINE L1 5757 5819 -349 20723 37 0 0 chr11 7846139 7848678 -142934875 - L1PA6 LINE L1 -2032 4114 1575 9771 55 12 2 chr11 7848678 7850701 -142932852 + L1PA6 LINE L1 4117 6154 0 6769 140 33 8 chr11 7850760 7852223 -142931330 + L1MA2 LINE L1 2469 3971 -3594 8681 143 17 9 chr11 7852224 7854812 -142928741 + L1MA2 LINE L1 5122 7723 0 403 240 70 63 chr11 7854902 7855110 -142928443 - L1M4 LINE L1 -1901 4245 4037 6875 59 22 0 chr11 7855244 7855904 -142927649 - L1PA7 LINE L1 -14 6140 5469 2422 82 0 0 chr11 7855904 7856207 -142927346 - AluY SINE Alu -8 303 1 6875 59 22 0 chr11 7856207 7856648 -142926905 - L1PA7 LINE L1 -685 5469 5039 312 308 45 50 chr11 7857319 7857517 -142926036 - L1MEd LINE L1 -5282 837 641 21 0 0 0 chr11 7857893 7857914 -142925639 + AT_rich Low_complexity Low_complexity 1 21 0 2003 119 0 10 chr11 7857914 7858208 -142925345 - AluSq SINE Alu -22 291 1 29 0 0 0 chr11 7859003 7859032 -142924521 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr11 7859158 7859190 -142924363 + AT_rich Low_complexity Low_complexity 1 32 0 2392 304 58 27 chr11 7861601 7862524 -142921029 - L2 LINE L2 -2142 1172 221 204 288 0 0 chr11 7863626 7863685 -142919868 + L3 LINE CR1 1361 1419 -158 203 88 29 0 chr11 7864363 7864397 -142919156 + (CA)n Simple_repeat Simple_repeat 1 35 0 239 338 104 24 chr11 7864678 7864920 -142918633 + MIR SINE MIR 2 259 -3 1595 182 3 55 chr11 7865199 7865506 -142918047 + AluJo SINE Alu 2 292 -20 1562 189 3 19 chr11 7865724 7866047 -142917506 - L1MD1 LINE L1 0 6242 5925 674 251 9 48 chr11 7866047 7866176 -142917377 - L1M4 LINE L1 -3738 2408 2288 2219 119 0 10 chr11 7866176 7866487 -142917066 - AluSg SINE Alu -2 308 1 674 251 9 48 chr11 7866487 7866581 -142916972 - L1M4 LINE L1 -3858 2288 2192 957 225 22 5 chr11 7866584 7866806 -142916747 + MLT1D-int LTR MaLR 291 516 -855 528 283 29 0 chr11 7866816 7866954 -142916599 + MLT1D-int LTR MaLR 746 887 -484 1492 232 40 96 chr11 7867097 7867597 -142915956 + MLT1D-int LTR MaLR 900 1371 0 1869 195 82 47 chr11 7867597 7868085 -142915468 + MLT1D LTR MaLR 1 505 0 360 216 74 99 chr11 7868146 7868308 -142915245 - L2 LINE L2 0 3313 3156 430 310 60 8 chr11 7868471 7868776 -142914777 + L1P2 LINE L1 5509 5835 -319 205 240 13 27 chr11 7868990 7869065 -142914488 + T-rich Low_complexity Low_complexity 2 75 0 344 182 0 0 chr11 7869467 7869522 -142914031 + MER5A DNA MER1_type 133 187 -2 705 249 29 0 chr11 7869527 7869700 -142913853 - MER5B DNA MER1_type 0 178 1 726 239 34 29 chr11 7869988 7870193 -142913360 - L2 LINE L2 0 3313 3108 210 204 20 0 chr11 7870268 7870317 -142913236 + (TA)n Simple_repeat Simple_repeat 2 51 0 279 316 44 53 chr11 7870355 7870469 -142913084 - MIR SINE MIR -133 129 17 2273 101 0 0 chr11 7870481 7870778 -142912775 - AluSg SINE Alu -13 297 1 560 121 30 0 chr11 7871143 7871275 -142912278 + (TA)n Simple_repeat Simple_repeat 1 136 0 2072 269 87 56 chr11 7871287 7872220 -142911333 - HERV16 LTR ERVL -2422 2574 1613 1535 303 35 0 chr11 7872249 7872705 -142910848 - HERV16 LTR ERVL -3598 1398 927 1468 304 55 16 chr11 7872934 7873499 -142910054 - HERV16 LTR ERVL -4372 624 38 1265 214 33 63 chr11 7873518 7873688 -142909865 + MLT1A2 LTR MaLR 1 175 -199 363 23 0 0 chr11 7873688 7873732 -142909821 + (TC)n Simple_repeat Simple_repeat 1 44 0 1265 214 33 63 chr11 7873732 7873926 -142909627 + MLT1A2 LTR MaLR 175 354 -20 786 300 45 16 chr11 7873925 7874172 -142909381 - LTR16A LTR ERVL -18 432 179 * 547 226 132 0 chr11 7875007 7875197 -142908356 - L1ME3A LINE L1 -220 5950 5736 456 245 35 14 chr11 7875244 7875387 -142908166 - L1M4 LINE L1 -3619 2527 2382 4684 171 51 17 chr11 7875462 7876821 -142906732 - L1PA16 LINE L1 -12 6154 4740 2753 173 26 116 chr11 7876819 7877212 -142906341 + L1PA14 LINE L1 5437 5729 -432 * 7079 47 18 0 chr11 7877212 7878356 -142905197 + L1PA6 LINE L1 4984 6150 -4 2753 173 26 116 chr11 7878356 7878730 -142904823 + L1PA14 LINE L1 5729 6135 -26 886 269 63 12 chr11 7878749 7879132 -142904421 + MER115 DNA AcHobo 238 693 0 254 293 40 30 chr11 7879144 7879243 -142904310 + L2 LINE L2 2868 2967 -305 409 305 65 45 chr11 7879270 7879886 -142903667 + L1MC/D LINE L1 4062 4689 -1457 2179 141 20 0 chr11 7880115 7880456 -142903097 + MER7A DNA MER2_type 1 346 0 24 0 0 0 chr11 7880558 7880582 -142902971 + AT_rich Low_complexity Low_complexity 1 24 0 449 271 87 64 chr11 7880622 7881136 -142902417 + L1MC/D LINE L1 5120 5653 -877 2026 130 0 35 chr11 7881136 7881452 -142902101 - AluSc SINE Alu -4 305 1 449 271 87 64 chr11 7881452 7881586 -142901967 + L1MC/D LINE L1 5653 5783 -747 1788 58 4 0 chr11 7881633 7881859 -142901694 - L1PA12 LINE L1 -4 6164 5938 413 391 66 0 chr11 7882186 7882383 -142901170 + L2 LINE L2 3061 3270 -2 2299 95 13 0 chr11 7884908 7885214 -142898339 - AluSg SINE Alu 0 310 1 335 280 51 34 chr11 7885757 7885875 -142897678 + L2 LINE L2 3149 3268 -4 33 25 0 0 chr11 7887834 7887874 -142895679 + AT_rich Low_complexity Low_complexity 1 40 0 257 301 96 0 chr11 7889095 7889178 -142894375 + MIR SINE MIR 84 174 -88 216 0 0 0 chr11 7890221 7890245 -142893308 + (TC)n Simple_repeat Simple_repeat 1 24 0 228 163 0 0 chr11 7890345 7890388 -142893165 + CT-rich Low_complexity Low_complexity 1 43 0 25 65 0 0 chr11 7891020 7891066 -142892487 + AT_rich Low_complexity Low_complexity 1 46 0 637 305 147 13 chr11 7891136 7891611 -142891942 + L1ME4a LINE L1 5330 5868 -253 212 237 68 0 chr11 7892090 7892149 -142891404 + L2 LINE L2 3210 3272 0 266 274 147 10 chr11 7892234 7892336 -142891217 + MIR3 SINE MIR 3 118 -90 430 333 59 34 chr11 7892639 7892843 -142890710 - MIR SINE MIR -10 252 44 279 157 100 14 chr11 7892942 7893012 -142890541 + L1MA9 LINE L1 6215 6290 -22 2452 58 6 12 chr11 7893920 7894246 -142889307 - L1P3 LINE L1 -457 5715 5392 2718 46 6 6 chr11 7894246 7894583 -142888970 + L1PA8 LINE L1 5818 6165 -7 21 57 0 0 chr11 7894759 7894794 -142888759 + AT_rich Low_complexity Low_complexity 1 35 0 192 258 0 45 chr11 7895180 7895246 -142888307 - L2 LINE L2 -340 2974 2912 42539 35 21 2 chr11 7895295 7901331 -142882222 + L1PA2 LINE L1 1 6155 0 380 358 72 21 chr11 7901345 7901624 -142881929 - L2 LINE L2 -458 2856 2564 2234 89 10 3 chr11 7901633 7901936 -142881617 - AluSc SINE Alu -4 305 1 438 292 42 58 chr11 7901964 7902224 -142881329 - L1MEc LINE L1 -3984 2412 2157 980 163 52 0 chr11 7902280 7902433 -142881120 - AluJ SINE Alu -22 290 130 1473 74 0 16 chr11 7902443 7902632 -142880921 + AluY SINE Alu 1 186 -125 744 157 8 0 chr11 7902770 7902891 -142880662 - AluJ SINE Alu -180 122 1 2023 141 0 0 chr11 7903097 7903381 -142880172 + AluSx SINE Alu 1 284 -28 426 337 75 33 chr11 7904468 7904800 -142878753 - HAL1 LINE L1 -1054 1453 1108 2550 70 0 3 chr11 7904950 7905262 -142878291 - AluY SINE Alu 0 311 1 352 321 47 26 chr11 7906383 7906573 -142876980 + L1 LINE L1 3623 3816 -2330 250 169 31 0 chr11 7907159 7907224 -142876329 + (TA)n Simple_repeat Simple_repeat 2 68 0 253 197 98 0 chr11 7907706 7907767 -142875786 - L1ME LINE L1 -474 5647 5581 1661 285 106 29 chr11 7908080 7909153 -142874400 + HAL1 LINE L1 1351 2506 -1 2110 173 32 42 chr11 7909399 7909948 -142873605 + L1MB7 LINE L1 4902 5451 -733 1927 249 54 33 chr11 7909933 7910448 -142873105 + L1ME4a LINE L1 1 526 -6333 * 554 256 5 46 chr11 7910448 7910667 -142872886 + L1ME4a LINE L1 2853 3062 -3897 1141 167 19 0 chr11 7910684 7910900 -142872653 - L1MB7 LINE L1 -317 5867 5648 225 217 65 0 chr11 7910898 7910944 -142872609 - L1M4b LINE L1 -6810 49 1 * 753 152 10 76 chr11 7910929 7911127 -142872426 - L1MB7 LINE L1 -733 5451 5267 2770 216 47 5 chr11 7911167 7911912 -142871641 + L1ME4a LINE L1 3042 3817 -3140 1987 165 31 21 chr11 7911889 7912308 -142871245 + L1MB7 LINE L1 6370 6792 -203 * 262 102 82 0 chr11 7912305 7912354 -142871199 - L1MB8 LINE L1 -236 5942 5890 * 2720 125 14 14 chr11 7913206 7913630 -142869923 - MSTA LTR MaLR -1 427 4 308 301 78 39 chr11 7914459 7914665 -142868888 + L1ME4a LINE L1 5580 5793 -1164 182 89 54 18 chr11 7914923 7914979 -142868574 + (TA)n Simple_repeat Simple_repeat 2 59 0 654 291 134 41 chr11 7915022 7915665 -142867888 + L1ME4a LINE L1 6187 6886 -46 1575 168 14 25 chr11 7916076 7916390 -142867163 + AluJo SINE Alu 1 311 0 218 105 26 0 chr11 7916765 7916803 -142866750 + (CA)n Simple_repeat Simple_repeat 1 39 0 886 274 82 50 chr11 7916803 7917219 -142866334 + LTR33 LTR ERVL 89 517 -4 4281 137 150 118 chr11 7917736 7918968 -142864585 - MER52C LTR ERV1 0 1278 8 180 158 0 0 chr11 7919250 7919288 -142864265 + (TG)n Simple_repeat Simple_repeat 1 38 0 519 318 92 32 chr11 7919311 7919896 -142863657 + L1M4 LINE L1 2681 3300 -2846 22 0 0 0 chr11 7920633 7920655 -142862898 + AT_rich Low_complexity Low_complexity 1 22 0 1735 154 37 20 chr11 7920821 7921120 -142862433 + AluJb SINE Alu 4 307 -5 587 333 60 32 chr11 7921366 7921898 -142861655 + HAL1 LINE L1 1138 1684 -823 1543 109 0 0 chr11 7921902 7922112 -142861441 + AluY SINE Alu 102 311 0 1990 167 0 0 chr11 7922390 7922702 -142860851 - AluSx SINE Alu 0 312 1 29 70 0 0 chr11 7922753 7922810 -142860743 + AT_rich Low_complexity Low_complexity 1 57 0 29 0 0 0 chr11 8123107 8123136 -142660417 + GC_rich Low_complexity Low_complexity 1 29 0 26 114 0 0 chr11 8123553 8123684 -142659869 + GC_rich Low_complexity Low_complexity 1 131 0 317 271 55 64 chr11 8124767 8124985 -142658568 + L1 LINE L1 3130 3345 -2801 241 106 0 85 chr11 8125044 8125091 -142658462 + tRNA-Ile-ATT tRNA tRNA 7 49 -28 2367 87 0 0 chr11 8125144 8125453 -142658100 - AluSg SINE Alu -1 309 1 348 227 10 41 chr11 8125613 8125710 -142657843 - MIR SINE MIR -102 160 67 226 383 12 0 chr11 8125800 8125881 -142657672 - L2 LINE L2 -87 3185 3104 586 283 69 43 chr11 8125975 8126208 -142657345 - L2 LINE L2 0 3313 3075 336 288 45 20 chr11 8126226 8126424 -142657129 - AluSp SINE Alu 0 303 101 23 0 0 0 chr11 8126509 8126532 -142657021 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 8126633 8126654 -142656899 + AT_rich Low_complexity Low_complexity 1 21 0 2193 101 0 0 chr11 8126998 8127294 -142656259 + AluSx SINE Alu 1 296 -16 427 189 42 32 chr11 8127376 8127471 -142656082 - MER21B LTR ERV1 -767 96 1 1209 101 43 14 chr11 8127875 8128082 -142655471 + AluSp SINE Alu 1 213 -100 1905 123 0 7 chr11 8128465 8128750 -142654803 - AluSx SINE Alu -15 297 15 822 189 6 0 chr11 8128756 8128915 -142654638 + AluJb SINE Alu 146 305 -7 2282 96 3 0 chr11 8128917 8129229 -142654324 + AluSp SINE Alu 1 313 0 576 197 118 8 chr11 8129238 8129365 -142654188 - MLT1A1 LTR MaLR -224 141 1 2422 169 11 20 chr11 8129448 8129686 -142653867 - Tigger2a DNA MER2_type -2274 434 200 2123 109 0 0 chr11 8129686 8129980 -142653573 - AluSg SINE Alu -16 294 1 2422 169 11 20 chr11 8129980 8130179 -142653374 - Tigger2a DNA MER2_type -2508 200 1 1988 108 3 3 chr11 8130341 8130629 -142652924 - AluSx SINE Alu -12 300 13 3620 181 33 41 chr11 8130733 8131035 -142652518 + LTR39 LTR ERV1 1 304 -479 2080 110 0 7 chr11 8131035 8131336 -142652217 + AluSc SINE Alu 1 299 -10 3620 181 33 41 chr11 8131336 8131653 -142651900 + LTR39 LTR ERV1 304 615 -168 2452 40 3 3 chr11 8131653 8131952 -142651601 + AluY SINE Alu 1 299 -12 3620 181 33 41 chr11 8131952 8132120 -142651433 + LTR39 LTR ERV1 615 783 0 531 221 82 0 chr11 8132270 8132392 -142651161 - MER4D LTR ERV1 -8 895 764 1438 143 44 8 chr11 8132405 8132656 -142650897 - MER4D LTR ERV1 -385 518 259 2184 103 0 0 chr11 8132803 8133103 -142650450 - AluSx SINE Alu -10 302 3 2488 131 144 51 chr11 8133128 8133357 -142650196 + MLT2B1 LTR ERVL 4 210 -310 2228 104 13 0 chr11 8133357 8133665 -142649888 - AluSx SINE Alu 0 312 1 2488 131 144 51 chr11 8133665 8133908 -142649645 + MLT2B1 LTR ERVL 210 520 0 357 344 114 30 chr11 8133908 8134038 -142649515 - L1MC4a LINE L1 -1649 6228 6110 2007 100 48 0 chr11 8134038 8134328 -142649225 - AluSg SINE Alu -3 307 4 357 344 114 30 chr11 8134328 8134459 -142649094 - L1MC4a LINE L1 -1767 6110 5945 370 240 10 10 chr11 8134464 8134564 -142648989 - L1MC4a LINE L1 -1984 5893 5794 216 0 0 0 chr11 8134564 8134588 -142648965 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2015 81 26 0 chr11 8134595 8134867 -142648686 - AluSg SINE Alu -31 279 1 219 178 20 69 chr11 8135489 8135590 -142647963 + (CCCCG)n Simple_repeat Simple_repeat 2 97 0 259 268 8 55 chr11 8135753 8135880 -142647673 + G-rich Low_complexity Low_complexity 2 122 0 501 253 42 57 chr11 8135963 8136170 -142647383 - L1MC4a LINE L1 -1570 4645 4441 1553 153 37 48 chr11 8136170 8136465 -142647088 + AluJo SINE Alu 1 292 -20 501 253 42 57 chr11 8136465 8136522 -142647031 - L1MC4a LINE L1 -1774 4441 4385 706 289 107 35 chr11 8136543 8136861 -142646692 - MLT1I LTR MaLR 0 409 69 13321 125 45 11 chr11 8136921 8138982 -142644571 + Tigger1 DNA MER2_type 1 2131 -287 1675 103 53 14 chr11 8139468 8139750 -142643803 - AluY SINE Alu -18 293 1 245 186 0 43 chr11 8139750 8139820 -142643733 - L1MC4a LINE L1 -2205 4010 3944 441 324 81 50 chr11 8139958 8140163 -142643390 - L1MC4a LINE L1 -4135 2080 1883 189 0 0 0 chr11 8140163 8140184 -142643369 + (TC)n Simple_repeat Simple_repeat 2 22 0 183 80 0 0 chr11 8140183 8140208 -142643345 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 441 324 81 50 chr11 8140184 8140323 -142643230 - L1MC4a LINE L1 -4332 1883 1750 405 258 70 48 chr11 8140450 8140679 -142642874 - L1MC4a LINE L1 -4766 1630 1397 396 297 73 50 chr11 8140912 8141215 -142642338 - L3 LINE CR1 -458 1119 810 1760 149 7 10 chr11 8141383 8141672 -142641881 + AluSx SINE Alu 1 288 -24 1640 171 18 0 chr11 8141707 8141988 -142641565 + AluJo SINE Alu 1 286 -26 351 65 0 0 chr11 8141988 8142034 -142641519 + (CAT)n Simple_repeat Simple_repeat 2 47 0 207 0 0 0 chr11 8142402 8142425 -142641128 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2025 109 3 0 chr11 8142791 8143116 -142640437 + AluSp SINE Alu 1 326 0 743 150 39 8 chr11 8143581 8143708 -142639845 + FLAM_C SINE Alu 1 131 -2 2040 91 10 29 chr11 8143729 8144037 -142639516 + AluSg SINE Alu 1 302 -8 538 248 26 0 chr11 8144039 8144152 -142639401 + MER21B LTR ERV1 18 133 -730 2402 201 34 45 chr11 8144190 8144371 -142639182 + MER21B LTR ERV1 136 317 -546 1717 109 113 8 chr11 8144371 8144637 -142638916 + AluSg SINE Alu 1 294 -16 2402 201 34 45 chr11 8144637 8145115 -142638438 + MER21B LTR ERV1 317 755 -108 255 150 25 0 chr11 8145117 8145157 -142638396 - Alu SINE Alu -259 41 1 874 182 96 0 chr11 8145244 8145431 -142638122 + MER39 LTR ERV1 1 205 -502 4152 166 67 44 chr11 8145598 8145620 -142637933 - L1M4 LINE L1 -998 5148 5128 1301 171 114 11 chr11 8145620 8145900 -142637653 - AluJo SINE Alu -3 309 1 4152 166 67 44 chr11 8145900 8146714 -142636839 - L1M4 LINE L1 -1018 5128 4283 612 254 0 0 chr11 8146714 8146855 -142636698 - FLAM_A SINE Alu 0 141 1 4152 166 67 44 chr11 8146855 8147009 -142636544 - L1M4 LINE L1 -1863 4283 4134 186 300 117 50 chr11 8147072 8147192 -142636361 - MIR SINE MIR -63 145 18 298 341 225 0 chr11 8148271 8148573 -142634980 + L2 LINE L2 2459 2828 -486 753 320 119 0 chr11 8148576 8148854 -142634699 - HERV16 LTR ERVL -2146 2850 2540 1429 320 79 9 chr11 8148854 8149425 -142634128 + ERVL LTR ERVL 2895 3505 -2259 3103 296 67 48 chr11 8149427 8151094 -142632459 + ERVL LTR ERVL 3357 5383 -381 905 281 139 19 chr11 8151258 8151632 -142631921 + LTR16B LTR ERVL 44 462 -2 1597 101 9 4 chr11 8151686 8151914 -142631639 + AluSc SINE Alu 1 229 -80 1966 125 10 3 chr11 8151949 8152237 -142631316 + AluJb SINE Alu 1 290 -22 1292 67 0 22 chr11 8152574 8152754 -142630799 + AluY SINE Alu 118 293 -18 219 121 0 0 chr11 8152823 8152856 -142630697 + MIR SINE MIR 190 222 -40 * 610 207 67 7 chr11 8152841 8152991 -142630562 + L2 LINE L2 2671 2829 -485 522 297 71 65 chr11 8153021 8153331 -142630222 - MLT1I LTR MaLR -27 382 71 381 223 204 0 chr11 8153414 8153571 -142629982 + L2 LINE L2 2839 3027 -286 263 266 219 41 chr11 8153586 8153755 -142629798 - MIR SINE MIR -12 250 52 1975 104 11 0 chr11 8153764 8154042 -142629511 + AluSx SINE Alu 17 297 -15 1990 103 10 13 chr11 8154053 8154365 -142629188 + AluY SINE Alu 1 311 0 1376 61 17 0 chr11 8154365 8154546 -142629007 + AluSg/x SINE Alu 127 310 0 193 311 97 19 chr11 8154815 8154918 -142628635 + L2 LINE L2 2656 2766 -548 607 183 7 51 chr11 8154966 8155103 -142628450 - FLAM_C SINE Alu -11 132 2 323 310 71 56 chr11 8155228 8155425 -142628128 + L2 LINE L2 2890 3089 -183 1911 116 34 0 chr11 8155431 8155723 -142627830 - AluSc SINE Alu -6 303 2 270 0 0 0 chr11 8155724 8155754 -142627799 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 1789 153 4 0 chr11 8155754 8156035 -142627518 - AluSx SINE Alu -30 282 1 1971 101 14 3 chr11 8156405 8156692 -142626861 + AluSq SINE Alu 5 294 -19 436 273 232 0 chr11 8156697 8156895 -142626658 - MIR SINE MIR -10 252 9 393 240 51 52 chr11 8157159 8157316 -142626237 + MIR3 SINE MIR 1 159 -61 558 78 0 11 chr11 8157714 8157804 -142625749 - L1PB1 LINE L1 -3 6148 6060 4438 158 48 4 chr11 8157805 8158898 -142624655 - L1PB1 LINE L1 -154 5997 4852 4083 177 99 17 chr11 8158918 8159873 -142623680 + L1MB7 LINE L1 5106 6148 -36 2043 116 0 0 chr11 8159873 8160181 -142623372 - AluSx SINE Alu 0 308 1 4083 177 99 17 chr11 8160181 8160222 -142623331 + L1MB7 LINE L1 6148 6184 0 500 216 0 0 chr11 8160305 8160393 -142623160 + MER81 DNA DNA 27 114 0 421 232 29 31 chr11 8160763 8160925 -142622628 + MLT2E LTR ERVL 201 576 -87 1158 106 0 0 chr11 8161035 8161196 -142622357 - AluSg/x SINE Alu -17 295 135 384 239 103 49 chr11 8161856 8162040 -142621513 - MARNA DNA Mariner -74 512 319 765 134 164 0 chr11 8162041 8162175 -142621378 - MLT1A2 LTR MaLR 0 374 219 4519 139 31 62 chr11 8162176 8162428 -142621125 - L1M1 LINE L1 -658 5645 5387 461 63 0 0 chr11 8162428 8162491 -142621062 - L1PA6 LINE L1 -2 6152 6090 4519 139 31 62 chr11 8162491 8163221 -142620332 - L1M1 LINE L1 -916 5387 4722 1799 161 0 16 chr11 8163221 8163525 -142620028 - AluJb SINE Alu -13 299 1 4519 139 31 62 chr11 8163525 8163798 -142619755 - L1M1 LINE L1 -1581 4722 4442 620 241 161 6 chr11 8164163 8164337 -142619216 - MIR SINE MIR -1 261 61 500 236 103 10 chr11 8165473 8165676 -142617877 - L1ME4a LINE L1 -59 6062 5841 722 114 19 0 chr11 8165851 8165956 -142617597 + AluSp SINE Alu 2 108 -205 517 238 82 41 chr11 8165957 8166201 -142617352 - HAL1 LINE L1 -1162 1345 1092 * 2574 232 70 64 chr11 8166195 8166434 -142617119 - L1ME3A LINE L1 -1 6169 5933 988 161 15 65 chr11 8166434 8166556 -142616997 - MER5A DNA MER1_type 0 189 79 2130 112 7 3 chr11 8166556 8166861 -142616692 - AluSg SINE Alu -4 306 1 988 161 15 65 chr11 8166861 8166937 -142616616 - MER5A DNA MER1_type -110 79 1 2574 232 70 64 chr11 8166937 8167046 -142616507 - L1ME3A LINE L1 -237 5933 5826 1735 139 52 14 chr11 8167046 8167333 -142616220 - AluJb SINE Alu -14 298 1 2574 232 70 64 chr11 8167333 8168219 -142615334 - L1ME3A LINE L1 -344 5826 4925 723 257 70 43 chr11 8168281 8168357 -142615196 - L1ME3A LINE L1 -1226 4920 4848 2131 128 0 0 chr11 8168357 8168661 -142614892 + AluSx SINE Alu 1 304 -8 723 257 70 43 chr11 8168661 8168911 -142614642 - L1ME3A LINE L1 -1298 4848 4585 795 132 47 0 chr11 8169091 8169220 -142614333 + AluJb SINE Alu 2 136 -176 2317 30 3 30 chr11 8169229 8169530 -142614023 + AluY SINE Alu 1 293 -18 272 263 90 43 chr11 8169999 8170131 -142613422 + MIR SINE MIR 35 172 -42 1999 117 10 10 chr11 8170474 8170773 -142612780 - AluSx SINE Alu -11 301 3 1826 174 0 28 chr11 8171120 8171441 -142612112 + AluJo SINE Alu 1 312 0 2092 141 3 0 chr11 8172212 8172516 -142611037 - AluSx SINE Alu -7 305 1 588 187 7 113 chr11 8172556 8172663 -142610890 + AluJo SINE Alu 3 120 -192 2215 69 0 31 chr11 8172663 8172986 -142610567 - AluY SINE Alu 0 314 1 2320 92 3 0 chr11 8172991 8173284 -142610269 - AluSq SINE Alu -19 294 1 588 187 7 113 chr11 8173284 8173319 -142610234 + AluJo SINE Alu 124 136 -176 316 235 71 0 chr11 8173411 8173496 -142610057 - MIR3 SINE MIR -7 201 111 3210 77 9 14 chr11 8173701 8174141 -142609412 + L1PA7 LINE L1 5717 6154 0 2303 117 0 0 chr11 8174170 8174468 -142609085 + AluSx SINE Alu 1 298 -14 2490 66 0 3 chr11 8174481 8174783 -142608770 + AluY SINE Alu 1 301 -10 700 107 0 19 chr11 8174810 8174913 -142608640 - AluJb SINE Alu -10 302 202 527 167 0 94 chr11 8174939 8174967 -142608586 - L1MC4 LINE L1 -13 8029 8000 1887 113 84 0 chr11 8174967 8175241 -142608312 + AluSg SINE Alu 1 297 -13 527 167 0 94 chr11 8175241 8175350 -142608203 - L1MC4 LINE L1 -42 8000 7905 2526 170 42 35 chr11 8175350 8175782 -142607771 - L1MB8 LINE L1 -6 6172 5734 2380 100 7 0 chr11 8175782 8176083 -142607470 - AluSq SINE Alu -10 303 1 2526 170 42 35 chr11 8176083 8176221 -142607332 - L1MB8 LINE L1 -444 5734 5598 2113 120 3 13 chr11 8176222 8176383 -142607170 - AluSq SINE Alu -15 298 140 2218 110 0 3 chr11 8176383 8176674 -142606879 - AluSg SINE Alu -15 295 6 2113 120 3 13 chr11 8176674 8176813 -142606740 - AluSq SINE Alu -173 140 1 827 137 36 7 chr11 8176813 8176952 -142606601 - AluJb SINE Alu -169 143 1 873 155 83 28 chr11 8176953 8177134 -142606419 - L1MB8 LINE L1 -579 5605 5415 215 31 31 0 chr11 8177148 8177180 -142606373 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 2165 119 0 0 chr11 8177184 8177470 -142606083 - AluSg SINE Alu -24 286 1 636 178 6 118 chr11 8177912 8178081 -142605472 - AluJo/FRAM SINE Alu -16 286 137 2488 73 7 0 chr11 8178081 8178381 -142605172 - AluSp SINE Alu -7 306 5 1404 175 144 0 chr11 8178382 8178639 -142604914 - AluJb SINE Alu -7 295 2 645 203 24 8 chr11 8178656 8178779 -142604774 - FLAM_C SINE Alu -7 126 2 1666 183 0 10 chr11 8179108 8179408 -142604145 + AluJo SINE Alu 1 297 -15 2122 128 10 0 chr11 8179596 8179894 -142603659 - AluSx SINE Alu -11 301 1 2304 90 7 3 chr11 8179943 8180243 -142603310 - AluSc SINE Alu -8 301 1 2426 80 0 0 chr11 8180251 8180553 -142603000 - AluY SINE Alu -9 302 1 2370 96 3 3 chr11 8181096 8181409 -142602144 - AluSq SINE Alu 0 313 1 217 215 154 0 chr11 8181474 8181539 -142602014 - MIR3 SINE MIR -3 205 131 193 299 75 0 chr11 8181618 8181685 -142601868 - MIR SINE MIR -96 112 41 33 0 0 0 chr11 8182199 8182232 -142601321 + AT_rich Low_complexity Low_complexity 1 33 0 1462 190 34 24 chr11 8182274 8182411 -142601142 + AluJb SINE Alu 1 135 -177 2339 80 3 7 chr11 8182411 8182737 -142600816 + AluSq SINE Alu 1 325 0 1462 190 34 24 chr11 8182737 8182893 -142600660 + AluJb SINE Alu 135 298 -14 2292 60 35 3 chr11 8183058 8183341 -142600212 - AluY SINE Alu -19 292 1 654 176 61 8 chr11 8183525 8183656 -142599897 + MER49 LTR ERV1 1 138 -785 1277 178 4 17 chr11 8183657 8183888 -142599665 - AluJb SINE Alu -44 268 41 261 229 0 0 chr11 8183898 8183946 -142599607 - MER4D LTR ERV1 -759 144 97 * 429 110 74 7 chr11 8183926 8184014 -142599539 + MER49 LTR ERV1 140 223 -680 1755 148 24 3 chr11 8184014 8184305 -142599248 + AluJb SINE Alu 1 297 -15 429 110 74 7 chr11 8184305 8184351 -142599202 + MER49 LTR ERV1 223 264 -639 2344 86 3 0 chr11 8184451 8184742 -142598811 - AluSp SINE Alu -21 292 1 640 295 25 38 chr11 8184752 8185034 -142598519 - L2 LINE L2 -244 3069 2793 948 184 50 6 chr11 8185034 8185213 -142598340 + MER5A DNA MER1_type 1 187 -2 1735 177 0 0 chr11 8185748 8186047 -142597506 - AluJb SINE Alu -13 299 1 2112 99 48 7 chr11 8186055 8186349 -142597204 - AluSq SINE Alu -7 306 1 1528 138 0 0 chr11 8186713 8186843 -142596710 + AluJo SINE Alu 1 133 -179 1892 152 20 3 chr11 8186843 8187139 -142596414 + AluJo SINE Alu 1 301 -11 1528 138 0 0 chr11 8187139 8187226 -142596327 + AluJo SINE Alu 132 218 -94 216 0 0 0 chr11 8187261 8187285 -142596268 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2290 110 0 3 chr11 8187343 8187652 -142595901 + AluSq SINE Alu 1 308 -5 2182 80 28 0 chr11 8187761 8188047 -142595506 + AluY SINE Alu 1 294 -17 276 206 0 98 chr11 8188048 8188150 -142595403 - L1ME3 LINE L1 -16 6146 6055 588 285 65 40 chr11 8188489 8188582 -142594971 - L1ME3 LINE L1 -747 5399 5310 2090 107 14 7 chr11 8188582 8188871 -142594682 - AluSx SINE Alu -21 291 1 588 285 65 40 chr11 8188871 8189040 -142594513 - L1ME3 LINE L1 -836 5310 5417 2110 101 3 17 chr11 8189040 8189337 -142594216 - AluSq SINE Alu -20 293 1 588 285 65 40 chr11 8189337 8189543 -142594010 - L1ME3 LINE L1 -728 5418 5219 21 0 0 0 chr11 8189619 8189640 -142593913 + AT_rich Low_complexity Low_complexity 1 21 0 208 241 19 0 chr11 8189675 8189729 -142593824 + CT-rich Low_complexity Low_complexity 4 58 0 720 163 0 8 chr11 8189729 8189852 -142593701 - FLAM_A SINE Alu 0 142 21 2224 127 3 0 chr11 8189914 8190221 -142593332 - AluSq SINE Alu -4 309 2 1833 142 62 0 chr11 8190225 8190513 -142593040 - AluJb SINE Alu -6 306 1 2996 162 30 87 chr11 8190513 8190791 -142592762 - L1MB5 LINE L1 -41 6133 5841 2336 109 3 0 chr11 8190791 8191095 -142592458 - AluSx SINE Alu -7 305 1 2996 162 30 87 chr11 8191095 8191455 -142592098 - L1MB5 LINE L1 -333 5841 5534 3503 125 2 4 chr11 8191455 8191967 -142591586 - MER9 LTR ERVK 0 511 1 2996 162 30 87 chr11 8191967 8192017 -142591536 - L1MB5 LINE L1 -640 5534 5483 2393 84 0 3 chr11 8192278 8192576 -142590977 - AluSx SINE Alu -15 297 1 1398 234 77 36 chr11 8192576 8193020 -142590533 - MLT1C LTR MaLR 0 467 6 2383 99 0 0 chr11 8193050 8193353 -142590200 - AluSg SINE Alu -7 303 1 2631 230 61 20 chr11 8193391 8194375 -142589178 - L1ME3A LINE L1 -161 6009 4983 2463 74 3 0 chr11 8194739 8195038 -142588515 - AluSp SINE Alu -13 300 1 403 245 0 110 chr11 8195349 8195463 -142588090 - MIR SINE MIR -6 256 162 1621 171 40 3 chr11 8195463 8195761 -142587792 - AluJb SINE Alu -3 309 1 403 245 0 110 chr11 8195761 8195801 -142587752 - MIR SINE MIR -100 162 119 2171 127 97 76 chr11 8195834 8195934 -142587619 - MER39 LTR ERV1 -1 706 610 1782 169 19 7 chr11 8195934 8196241 -142587312 + AluJo SINE Alu 1 311 -1 2171 127 97 76 chr11 8196241 8196263 -142587290 - MER39 LTR ERV1 -97 610 590 2529 58 6 16 chr11 8196263 8196576 -142586977 + AluY SINE Alu 1 310 -1 2171 127 97 76 chr11 8196576 8196978 -142586575 - MER39 LTR ERV1 -117 590 170 180 0 0 0 chr11 8197080 8197100 -142586453 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1253 103 0 29 chr11 8197179 8197354 -142586199 + AluSx SINE Alu 1 170 -142 2331 105 0 13 chr11 8197381 8197696 -142585857 - AluSx SINE Alu -1 311 1 966 182 0 16 chr11 8197732 8197919 -142585634 - AluJb SINE Alu -2 310 127 2181 116 0 3 chr11 8197941 8198235 -142585318 - AluSx SINE Alu -19 293 1 2266 102 3 0 chr11 8198267 8198579 -142584974 - AluSp SINE Alu 0 313 1 2375 199 59 109 chr11 8199131 8199805 -142583748 - HAL1 LINE L1 -634 1873 1167 2191 103 3 0 chr11 8199805 8200120 -142583433 - AluSq SINE Alu 0 316 1 1490 153 111 0 chr11 8200127 8200389 -142583164 - AluJb SINE Alu -21 291 1 2375 199 59 109 chr11 8200389 8200564 -142582989 - HAL1 LINE L1 -1346 1161 1063 1708 138 40 20 chr11 8200564 8200862 -142582691 - AluJo SINE Alu -8 304 1 2375 199 59 109 chr11 8200862 8200939 -142582614 - HAL1 LINE L1 -1444 1063 984 1732 187 76 22 chr11 8201071 8201308 -142582245 - L1MB8 LINE L1 0 6178 5955 180 0 0 0 chr11 8201308 8201328 -142582225 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2127 98 3 7 chr11 8201328 8201613 -142581940 - AluSq SINE Alu -29 284 1 1732 187 76 22 chr11 8201613 8201781 -142581772 - L1MB8 LINE L1 -222 5956 5750 1167 174 11 114 chr11 8201799 8202080 -142581473 - AluJo SINE Alu -19 293 42 524 196 116 0 chr11 8202098 8202210 -142581343 - FLAM_C SINE Alu -8 125 1 511 254 103 46 chr11 8202213 8202532 -142581021 - HAL1 LINE L1 -2137 370 2 421 317 18 18 chr11 8202576 8202740 -142580813 - MIR3 SINE MIR -9 199 36 2222 103 7 10 chr11 8202995 8203296 -142580257 + AluSx SINE Alu 1 300 -12 2122 128 0 10 chr11 8203822 8204126 -142579427 + AluSx SINE Alu 6 306 -6 1993 148 3 0 chr11 8205013 8205318 -142578235 - AluSx SINE Alu -6 306 1 1575 180 27 38 chr11 8205417 8205557 -142577996 - L1MD1 LINE L1 0 6242 6102 1469 163 17 21 chr11 8205557 8205845 -142577708 + AluSq SINE Alu 16 302 -11 1575 180 27 38 chr11 8205845 8206077 -142577476 - L1MD1 LINE L1 -140 6102 5874 1261 201 74 72 chr11 8206083 8206586 -142576967 - L1MDa LINE L1 -4561 1519 1016 811 171 0 29 chr11 8206604 8206744 -142576809 - AluJo SINE Alu -176 136 1 257 250 37 9 chr11 8206745 8206882 -142576671 - L1MDa LINE L1 -5064 1019 879 2199 101 13 7 chr11 8206897 8207195 -142576358 - AluSg SINE Alu -10 300 1 1517 238 146 33 chr11 8207204 8207403 -142576150 - L1MDa LINE L1 -5292 778 603 194 62 31 0 chr11 8207403 8207435 -142576118 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1517 238 146 33 chr11 8207435 8207836 -142575717 - L1MDa LINE L1 -5467 603 110 1400 177 90 7 chr11 8208028 8208305 -142575248 + AluJo SINE Alu 3 302 -10 2195 129 0 3 chr11 8208721 8209023 -142574530 - AluSx SINE Alu -11 301 1 276 139 0 23 chr11 8209572 8209615 -142573938 - 5S rRNA rRNA -79 42 1 573 204 38 81 chr11 8210965 8211176 -142572377 - MER112 DNA MER1_type -58 202 1 754 262 16 60 chr11 8212661 8212913 -142570640 - MIR SINE MIR -6 256 16 1650 178 0 24 chr11 8212943 8213236 -142570317 - AluJo SINE Alu -26 286 1 231 173 53 93 chr11 8213281 8213356 -142570197 - MIR SINE MIR -70 192 121 1918 140 14 0 chr11 8213980 8214266 -142569287 - AluSx SINE Alu -22 290 1 1091 263 94 4 chr11 8215742 8216231 -142567322 - L2 LINE L2 0 3313 2766 2430 179 137 62 chr11 8216275 8217035 -142566518 - L1MC4 LINE L1 0 8042 7226 276 225 14 0 chr11 8217079 8217150 -142566403 - L1MC4 LINE L1 -805 7237 7166 1796 151 37 0 chr11 8217150 8217448 -142566105 - AluJo SINE Alu -3 309 1 1153 178 0 53 chr11 8217454 8217679 -142565874 - AluJo SINE Alu -15 297 85 692 140 156 1 chr11 8217682 8217858 -142565695 - L1MC4 LINE L1 -715 7143 6882 406 228 53 0 chr11 8217863 8217977 -142565576 + L2 LINE L2 3194 3313 0 * 665 273 5 20 chr11 8217976 8218174 -142565379 - L2 LINE L2 -600 2714 2520 923 265 79 0 chr11 8218177 8218430 -142565123 - Charlie8 DNA MER1_type -2143 274 2 1885 170 3 3 chr11 8219342 8219631 -142563922 - AluJb SINE Alu -23 289 1 2129 103 52 0 chr11 8219768 8220058 -142563495 - AluSq SINE Alu -8 305 1 2320 97 7 0 chr11 8220214 8220514 -142563039 - AluSc SINE Alu -7 302 1 1944 156 3 0 chr11 8221144 8221433 -142562120 - AluSx SINE Alu -22 290 1 2305 80 3 0 chr11 8221534 8221820 -142561733 - AluSg SINE Alu -22 288 2 246 245 0 0 chr11 8222035 8222084 -142561469 - MIR SINE MIR -70 138 90 2338 92 3 7 chr11 8222186 8222490 -142561063 - AluSx SINE Alu -9 303 1 1432 152 32 95 chr11 8222676 8222853 -142560700 - AluJo SINE Alu -16 296 146 2006 116 0 40 chr11 8222853 8223154 -142560399 - AluSx SINE Alu -23 289 1 1432 152 32 95 chr11 8223154 8223292 -142560261 - AluJo SINE Alu -166 146 1 950 182 82 29 chr11 8223981 8224261 -142559292 + L1MC5 LINE L1 7589 7883 -78 2232 116 0 0 chr11 8224344 8224637 -142558916 + AluY SINE Alu 2 294 -17 1341 73 11 28 chr11 8224745 8224924 -142558629 - AluSx SINE Alu -136 176 1 1884 153 3 16 chr11 8225955 8226263 -142557290 - AluJo SINE Alu -8 304 1 23 0 0 0 chr11 8226338 8226361 -142557192 + AT_rich Low_complexity Low_complexity 1 23 0 2463 84 0 3 chr11 8226548 8226859 -142556694 - AluSg SINE Alu 0 310 1 2074 87 3 93 chr11 8227666 8227999 -142555554 + AluSx SINE Alu 1 303 -9 267 241 0 0 chr11 8228540 8228594 -142554959 - L1ME4a LINE L1 -95 6026 5973 2493 110 48 20 chr11 8228640 8228994 -142554559 - THE1B LTR MaLR 0 364 1 11706 88 8 27 chr11 8228999 8229370 -142554183 - THE1B-int LTR MaLR -6 1574 1197 2057 125 3 28 chr11 8229370 8229691 -142553862 + AluSp SINE Alu 1 313 0 11706 88 8 27 chr11 8229691 8230925 -142552628 - THE1B-int LTR MaLR -383 1197 1 2324 104 75 23 chr11 8230925 8231270 -142552283 - THE1B LTR MaLR 0 364 2 2217 114 3 10 chr11 8232206 8232514 -142551039 - AluSx SINE Alu -6 306 1 188 115 0 0 chr11 8233208 8233234 -142550319 + L2 LINE L2 3241 3266 -6 268 228 28 4 chr11 8233349 8233612 -142549941 + (CA)n Simple_repeat Simple_repeat 1 269 0 1176 64 0 7 chr11 8233638 8233779 -142549774 - L1PA7 LINE L1 -15 6139 6000 739 299 104 31 chr11 8233939 8234110 -142549443 + L1ME3A LINE L1 4981 5138 -1024 2138 106 3 7 chr11 8234110 8234403 -142549150 - AluSx SINE Alu -20 292 1 739 299 104 31 chr11 8234403 8234943 -142548610 + L1ME3A LINE L1 5138 5652 -510 2429 70 0 3 chr11 8234943 8235242 -142548311 - AluY SINE Alu -13 298 1 1144 114 0 0 chr11 8235250 8235408 -142548145 - AluSp SINE Alu -19 294 137 626 232 52 21 chr11 8235408 8235602 -142547951 + L1ME3A LINE L1 5740 5939 -231 1508 152 119 15 chr11 8235604 8235873 -142547680 + AluJo SINE Alu 1 297 -15 466 230 72 7 chr11 8235939 8236078 -142547475 - MIR SINE MIR 0 262 115 2918 146 30 32 chr11 8236249 8236756 -142546797 - L1MA5 LINE L1 -4 6296 5791 605 193 30 37 chr11 8236813 8236948 -142546605 + MIR SINE MIR 15 148 -114 2080 130 13 0 chr11 8236976 8237275 -142546278 - AluSx SINE Alu -9 303 1 320 410 17 11 chr11 8237353 8237531 -142546022 - MIR3 SINE MIR -17 191 13 1824 158 0 16 chr11 8237557 8237861 -142545692 - AluJb SINE Alu -13 299 1 583 278 40 35 chr11 8237864 8238091 -142545462 - MIR SINE MIR -7 255 28 1754 164 10 7 chr11 8238849 8239141 -142544412 - AluJo SINE Alu -19 293 1 406 326 21 7 chr11 8239166 8239312 -142544241 - MIR SINE MIR -67 141 34 2424 70 3 0 chr11 8239514 8239812 -142543741 + AluSp SINE Alu 1 299 -14 226 308 26 26 chr11 8241239 8241356 -142542197 + L2 LINE L2 2894 3010 -262 375 298 69 23 chr11 8241360 8241578 -142541975 - MLT1L LTR MaLR -2 613 386 1519 200 10 23 chr11 8241643 8241943 -142541610 - AluJo SINE Alu -16 296 1 1801 181 13 3 chr11 8242029 8242338 -142541215 - AluJo SINE Alu 0 312 1 281 287 69 18 chr11 8242350 8242565 -142540988 - MLT1L LTR MaLR -310 201 1 191 398 65 30 chr11 8242585 8242786 -142540767 + L2 LINE L2 3030 3237 -35 229 303 10 71 chr11 8242939 8243038 -142540515 + L2 LINE L2 3221 3313 0 202 289 23 78 chr11 8243009 8243137 -142540416 - L2 LINE L2 -9 3304 3184 * 4015 180 127 77 chr11 8243316 8244587 -142538966 - L1M4 LINE L1 -964 5182 3849 810 249 5 22 chr11 8244588 8244773 -142538780 - AluJo SINE Alu -11 301 120 3787 197 52 49 chr11 8244795 8245182 -142538371 - L1MEc LINE L1 -3887 2509 2125 2381 62 13 10 chr11 8245182 8245488 -142538065 - AluY SINE Alu -4 307 1 3787 197 52 49 chr11 8245488 8245657 -142537896 - L1MEc LINE L1 -4271 2125 1958 613 269 8 0 chr11 8245657 8245787 -142537766 + FLAM_A SINE Alu 1 131 -2 3787 197 52 49 chr11 8245787 8246184 -142537369 - L1MEc LINE L1 -4438 1958 1552 1031 98 0 0 chr11 8246184 8246317 -142537236 + AluSq/x SINE Alu 1 133 -180 2347 116 8 25 chr11 8246419 8246772 -142536781 - THE1B LTR MaLR -17 347 1 1532 158 32 80 chr11 8247093 8247404 -142536149 - AluJb SINE Alu -16 296 1 219 69 0 0 chr11 8247405 8247434 -142536119 + (T)n Simple_repeat Simple_repeat 1 29 0 899 232 5 16 chr11 8248007 8248197 -142535356 + AluSc SINE Alu 114 301 -8 2057 133 76 25 chr11 8248227 8248581 -142534972 - THE1C LTR MaLR -3 372 1 1031 281 35 31 chr11 8248583 8249095 -142534458 - L1MEc LINE L1 -4856 1540 1027 2746 231 103 15 chr11 8249103 8249132 -142534421 - L1MEc LINE L1 -5553 843 818 1406 228 10 7 chr11 8249132 8249426 -142534127 - AluJo SINE Alu -13 299 5 2746 231 103 15 chr11 8249426 8250137 -142533416 - L1MEc LINE L1 -5578 818 38 312 70 0 0 chr11 8250176 8250219 -142533334 + (TG)n Simple_repeat Simple_repeat 2 44 0 348 24 0 0 chr11 8251479 8251520 -142532033 + (TG)n Simple_repeat Simple_repeat 2 42 0 2107 128 3 7 chr11 8251538 8251844 -142531709 - AluSq SINE Alu -8 305 1 2024 113 7 3 chr11 8252400 8252683 -142530870 + AluSc SINE Alu 26 309 0 1821 168 21 0 chr11 8253018 8253304 -142530249 + AluJo SINE Alu 1 292 -20 2405 74 0 7 chr11 8253452 8253750 -142529803 + AluSg SINE Alu 1 296 -14 710 175 0 0 chr11 8253786 8253889 -142529664 - FLAM_A SINE Alu -20 122 20 236 167 0 0 chr11 8254033 8254069 -142529484 - L2 LINE L2 -12 3260 3225 1278 140 154 89 chr11 8254399 8254692 -142528861 + AluJb SINE Alu 1 312 0 21 36 0 0 chr11 8254953 8254981 -142528572 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 8255397 8255421 -142528132 + GC_rich Low_complexity Low_complexity 1 24 0 333 0 0 0 chr11 8255867 8255904 -142527649 + (A)n Simple_repeat Simple_repeat 1 37 0 279 0 0 0 chr11 8256009 8256040 -142527513 + (A)n Simple_repeat Simple_repeat 1 31 0 289 178 47 122 chr11 8256135 8256242 -142527311 - HsTC2 DNA Tc2 -275 1623 1525 2190 122 3 7 chr11 8256274 8256577 -142526976 - AluSx SINE Alu -10 302 1 305 243 14 0 chr11 8256649 8256723 -142526830 - HsTC2 DNA Tc2 -1823 75 1 1021 256 128 45 chr11 8256742 8257095 -142526458 + L1ME3A LINE L1 5494 5901 -269 1300 216 21 31 chr11 8257095 8257382 -142526171 + AluJb SINE Alu 2 285 -17 1021 256 128 45 chr11 8257382 8257521 -142526032 + L1ME3A LINE L1 5901 6027 -143 2537 68 3 3 chr11 8257559 8257867 -142525686 + AluSp SINE Alu 1 308 -5 309 211 53 72 chr11 8257898 8258050 -142525503 + L1ME4a LINE L1 5932 6080 -41 225 320 0 26 chr11 8258074 8258152 -142525401 + MIR SINE MIR 24 99 -109 24 0 0 0 chr11 8258152 8258176 -142525377 + AT_rich Low_complexity Low_complexity 1 24 0 460 209 115 22 chr11 8258290 8258429 -142525124 + MIR SINE MIR 111 262 0 2331 85 0 3 chr11 8258737 8259032 -142524521 - AluY SINE Alu -17 294 1 453 192 58 19 chr11 8260025 8260129 -142523424 - L2 LINE L2 -18 3295 3188 4142 136 47 44 chr11 8260222 8260480 -142523073 + L1MB7 LINE L1 5430 5686 -498 2351 102 10 0 chr11 8260480 8260785 -142522768 + AluSq SINE Alu 1 308 -5 4142 136 47 44 chr11 8260785 8261279 -142522274 + L1MB7 LINE L1 5686 6184 0 622 247 54 40 chr11 8261440 8261577 -142521976 + MIR SINE MIR 1 135 -127 221 73 0 24 chr11 8261577 8261618 -142521935 + (TTTAA)n Simple_repeat Simple_repeat 3 42 0 1482 185 11 21 chr11 8261618 8261905 -142521648 - AluJb SINE Alu -28 284 1 622 247 54 40 chr11 8261905 8261989 -142521564 + MIR SINE MIR 134 226 -36 467 235 87 0 chr11 8262021 8262136 -142521417 - L1ME4a LINE L1 -293 5828 5704 260 317 119 20 chr11 8262188 8262289 -142521264 + MIR3 SINE MIR 6 116 -92 3615 126 4 0 chr11 8262337 8262839 -142520714 + L1PA15 LINE L1 5656 6159 -6 545 158 18 0 chr11 8263256 8263370 -142520183 + CT-rich Low_complexity Low_complexity 2 117 0 910 154 0 7 chr11 8263372 8263515 -142520038 - AluSc SINE Alu -36 273 132 1682 93 0 9 chr11 8263515 8263741 -142519812 - AluSg/x SINE Alu -4 308 85 264 241 35 0 chr11 8264919 8264977 -142518576 - L1ME4a LINE L1 -470 5651 5592 2058 133 3 0 chr11 8265006 8265299 -142518254 - AluSx SINE Alu -18 294 1 31 26 0 0 chr11 8265306 8265344 -142518209 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr11 8265478 8265508 -142518045 + AT_rich Low_complexity Low_complexity 1 30 0 736 302 21 25 chr11 8265797 8266039 -142517514 + MIR SINE MIR 4 244 -18 259 243 89 66 chr11 8266514 8266648 -142516905 - MIR SINE MIR -61 147 52 1829 121 15 95 chr11 8266793 8267131 -142516422 - AluSx SINE Alu -1 311 1 2225 109 20 0 chr11 8267141 8267445 -142516108 - AluSx SINE Alu -2 310 1 513 290 37 19 chr11 8268275 8268437 -142515116 - MIR3 SINE MIR -15 193 29 485 302 81 51 chr11 8269031 8269266 -142514287 + MIR SINE MIR 11 252 -10 300 349 118 25 chr11 8270345 8270855 -142512698 + L2 LINE L2 1941 2497 -817 232 297 115 24 chr11 8272092 8272257 -142511296 - L3b LINE CR1 -232 1351 1172 316 308 81 38 chr11 8272837 8273022 -142510531 + MIR3 SINE MIR 16 208 0 2101 117 7 0 chr11 8274617 8274925 -142508628 - AluSx SINE Alu -2 310 1 335 236 14 0 chr11 8276394 8276466 -142507087 - L2 LINE L2 0 3272 3200 183 250 143 0 chr11 8277490 8277546 -142506007 + L3 LINE CR1 113 176 -1401 966 148 17 165 chr11 8277827 8278226 -142505327 + Tigger3(Golem) DNA MER2_type 6 3028 -1 2173 85 3 0 chr11 8278429 8278740 -142504813 - AluSp SINE Alu 0 312 1 923 240 91 33 chr11 8279170 8279412 -142504141 + MIR SINE MIR 7 262 0 193 307 23 11 chr11 8280995 8281083 -142502470 - MIR SINE MIR -116 146 58 385 304 86 58 chr11 8281279 8281592 -142501961 + L2 LINE L2 2899 3220 -52 3192 197 50 53 chr11 8282436 8283420 -142500133 - L1MC5 LINE L1 -430 7531 6633 1209 162 60 0 chr11 8283560 8283776 -142499777 - MSTB1 LTR MaLR 0 432 204 698 159 0 0 chr11 8283776 8283883 -142499670 + AluSq/x SINE Alu 2 108 -204 531 296 11 49 chr11 8284053 8284320 -142499233 - L1MEd LINE L1 -4862 1257 1001 345 338 88 44 chr11 8284403 8284699 -142498854 - MLT1K LTR MaLR -158 430 122 265 345 58 0 chr11 8284977 8285064 -142498489 + LTR67 LTR ERVL 99 190 -367 237 299 104 0 chr11 8285214 8285281 -142498272 - MIR SINE MIR -149 113 40 665 278 45 31 chr11 8285763 8285986 -142497567 - MIR SINE MIR -14 248 23 1358 156 28 86 chr11 8286006 8286332 -142497221 - AluJo SINE Alu -5 307 1 271 146 0 0 chr11 8286332 8286380 -142497173 - L1ME4a LINE L1 -1 6120 6073 2193 109 64 19 chr11 8286510 8286869 -142496684 - THE1C LTR MaLR 0 375 1 203 122 0 49 chr11 8286876 8286917 -142496636 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 2140 100 0 0 chr11 8287128 8287419 -142496134 - AluSg SINE Alu -19 291 1 369 0 0 0 chr11 8287475 8287516 -142496037 + (TG)n Simple_repeat Simple_repeat 1 41 0 189 0 0 0 chr11 8287838 8287859 -142495694 + (TCC)n Simple_repeat Simple_repeat 2 22 0 2080 286 90 38 chr11 8287891 8288366 -142495187 - L1MC4a LINE L1 -743 5403 4954 2265 88 3 0 chr11 8288366 8288661 -142494892 - AluSx SINE Alu -16 296 1 2080 286 90 38 chr11 8288661 8290673 -142492880 - L1MC4a LINE L1 -1192 4954 3502 2282 89 0 13 chr11 8290850 8291163 -142492390 - AluSc SINE Alu 0 309 1 463 286 100 92 chr11 8291257 8291617 -142491936 - L2 LINE L2 0 3272 2910 2070 98 39 0 chr11 8291707 8291992 -142491561 + AluSq SINE Alu 1 296 -17 6107 193 81 54 chr11 8292031 8292632 -142490921 + MER45R DNA AcHobo 4 587 -994 1406 179 144 4 chr11 8292632 8292895 -142490658 - AluJo SINE Alu -2 300 1 6107 193 81 54 chr11 8292895 8293591 -142489962 + MER45R DNA AcHobo 587 1352 -229 1796 154 3 0 chr11 8293591 8293883 -142489670 - AluJo SINE Alu -19 293 1 6107 193 81 54 chr11 8293883 8294120 -142489433 + MER45R DNA AcHobo 1352 1581 0 396 265 66 73 chr11 8294233 8294339 -142489214 + L2 LINE L2 3134 3240 -32 578 300 107 0 chr11 8294339 8294572 -142488981 + MIR SINE MIR 4 261 -1 396 265 66 73 chr11 8294572 8294601 -142488952 + L2 LINE L2 3240 3268 -4 21 0 0 0 chr11 8294705 8294726 -142488827 + AT_rich Low_complexity Low_complexity 1 21 0 3828 160 47 27 chr11 8294842 8295469 -142488084 + L1MB3 LINE L1 5415 6061 -122 1913 95 29 49 chr11 8295469 8295775 -142487778 + AluSx SINE Alu 1 300 -12 3828 160 47 27 chr11 8295775 8295899 -142487654 + L1MB3 LINE L1 6061 6181 -2 235 232 14 14 chr11 8295920 8295989 -142487564 - MLT1L LTR MaLR -58 557 489 298 277 122 27 chr11 8296034 8296182 -142487371 - MLT1K LTR MaLR -230 358 197 251 242 148 66 chr11 8296151 8296333 -142487220 - MLT1L LTR MaLR -403 212 16 * 1801 103 3 80 chr11 8296488 8296826 -142486727 - AluSg SINE Alu 0 315 1 250 300 34 45 chr11 8296975 8297149 -142486404 - L2 LINE L2 -309 2963 2793 1876 234 44 67 chr11 8297166 8297415 -142486138 - L1ME3 LINE L1 -7 6155 5902 1678 167 0 42 chr11 8297415 8297581 -142485972 - AluJo SINE Alu -13 299 150 1816 154 0 10 chr11 8297581 8297886 -142485667 - AluSx SINE Alu -10 302 1 1678 167 0 42 chr11 8297886 8298030 -142485523 - AluJo SINE Alu -162 150 2 1876 234 44 67 chr11 8298030 8298055 -142485498 - L1ME3 LINE L1 -260 5902 5878 5364 96 31 8 chr11 8298055 8298817 -142484736 - LTR17 LTR ERV1 0 780 1 1876 234 44 67 chr11 8298817 8299156 -142484397 - L1ME3 LINE L1 -284 5878 5555 241 245 147 29 chr11 8299188 8299290 -142484263 - L2 LINE L2 -586 2728 2615 432 238 99 61 chr11 8299368 8299657 -142483896 - MLT1K LTR MaLR -230 358 41 301 325 107 19 chr11 8299709 8299915 -142483638 - L2 LINE L2 -741 2573 2350 180 0 0 0 chr11 8299963 8299983 -142483570 + (A)n Simple_repeat Simple_repeat 1 20 0 205 290 104 67 chr11 8301766 8302094 -142481459 - L2 LINE L2 -1040 2274 1935 259 293 0 0 chr11 8303399 8303457 -142480096 + (TG)n Simple_repeat Simple_repeat 2 59 0 31 26 0 0 chr11 8304464 8304502 -142479051 + GC_rich Low_complexity Low_complexity 1 38 0 24 63 0 16 chr11 8304625 8304644 -142478909 + GC_rich Low_complexity Low_complexity 1 19 -43 306 73 0 0 chr11 8304644 8304685 -142478868 + (CTG)n Simple_repeat Simple_repeat 1 41 0 24 63 0 16 chr11 8304685 8304728 -142478825 + GC_rich Low_complexity Low_complexity 19 62 0 1430 102 40 31 chr11 8305535 8305761 -142477792 + MER30 DNA MER1_type 3 230 0 414 298 131 27 chr11 8305852 8306267 -142477286 - L2 LINE L2 -22 3250 2795 328 267 106 37 chr11 8307114 8307275 -142476278 - MIR3 SINE MIR -9 199 28 1967 101 0 44 chr11 8307622 8307920 -142475633 - AluSq SINE Alu -24 289 5 244 219 31 78 chr11 8308061 8308125 -142475428 + L2 LINE L2 3251 3311 -2 195 42 0 0 chr11 8308580 8308604 -142474949 + (TC)n Simple_repeat Simple_repeat 2 25 0 243 286 67 0 chr11 8309039 8309158 -142474395 - HAL1b LINE L1 0 1348 1222 2409 83 0 0 chr11 8309256 8309558 -142473995 - AluSx SINE Alu -10 302 1 1807 138 3 14 chr11 8310007 8310298 -142473255 + AluJo SINE Alu 13 300 -12 2208 99 0 6 chr11 8310369 8310681 -142472872 - AluY SINE Alu -1 310 1 5684 191 87 69 chr11 8310703 8311079 -142472474 - L1MC4a LINE L1 0 7808 7440 1464 151 78 4 chr11 8311079 8311197 -142472356 + AluJo SINE Alu 1 109 -203 216 0 0 0 chr11 8311197 8311221 -142472332 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1464 151 78 4 chr11 8311221 8311373 -142472180 + AluJo SINE Alu 109 291 -21 5684 191 87 69 chr11 8311373 8312286 -142471267 - L1MC4a LINE L1 -368 7440 6475 2166 70 46 0 chr11 8312286 8312570 -142470983 + AluSg SINE Alu 1 297 -13 5684 191 87 69 chr11 8312570 8313118 -142470435 - L1MC4a LINE L1 -1333 6475 5938 2754 192 33 3 chr11 8313137 8313716 -142469837 - L1MB7 LINE L1 -9 6175 5580 2726 171 14 41 chr11 8313720 8314433 -142469120 + L1MA7 LINE L1 5084 5776 -407 658 154 0 19 chr11 8314433 8314564 -142468989 - FLAM_A SINE Alu 0 142 20 2726 171 14 41 chr11 8314564 8314907 -142468646 + L1MA7 LINE L1 5776 6127 -56 3074 185 35 47 chr11 8314926 8315443 -142468110 - L1MB7 LINE L1 -597 5587 5090 1557 153 22 7 chr11 8315443 8315718 -142467835 - AluJo SINE Alu 0 312 34 3074 185 35 47 chr11 8315718 8316188 -142467365 - L1MB7 LINE L1 -1094 5090 4616 1433 222 28 25 chr11 8316203 8316559 -142466994 - L1MC4a LINE L1 -1854 5954 5598 525 258 155 7 chr11 8318798 8318953 -142464600 + MER5B DNA MER1_type 1 178 0 351 217 217 17 chr11 8319596 8319711 -142463842 - L2 LINE L2 -1 3312 3175 229 345 19 49 chr11 8319828 8320095 -142463458 + L2 LINE L2 2045 2303 -1011 268 340 125 71 chr11 8320587 8320894 -142462659 + L2 LINE L2 2840 3176 -96 2048 112 31 0 chr11 8320894 8321188 -142462365 - AluSx SINE Alu -9 303 1 268 340 125 71 chr11 8321188 8321289 -142462264 + L2 LINE L2 3176 3270 -2 548 275 99 23 chr11 8321723 8321894 -142461659 + MIR3 SINE MIR 19 202 -6 337 269 92 8 chr11 8322232 8322362 -142461191 - HAL1 LINE L1 -2366 141 1 2254 68 0 0 chr11 8323615 8323937 -142459616 + AluY SINE Alu 2 323 0 24 0 0 0 chr11 8324085 8324109 -142459444 + AT_rich Low_complexity Low_complexity 1 24 0 181 302 19 19 chr11 8324139 8324192 -142459361 + L2 LINE L2 1145 1197 -2117 304 103 35 0 chr11 8325935 8325993 -142457560 + CT-rich Low_complexity Low_complexity 2 61 0 563 274 101 25 chr11 8327258 8327495 -142456058 - MIR SINE MIR -1 261 7 201 308 133 7 chr11 8327586 8327729 -142455824 + L2 LINE L2 3109 3269 -3 25 105 0 0 chr11 8328335 8328430 -142455123 + AT_rich Low_complexity Low_complexity 1 95 0 212 234 64 0 chr11 8329179 8329226 -142454327 + L2 LINE L2 3259 3308 -5 383 298 62 58 chr11 8330438 8330566 -142452987 + MIR SINE MIR 40 171 -91 1900 127 57 46 chr11 8330566 8330936 -142452617 - THE1C LTR MaLR -1 374 1 383 298 62 58 chr11 8330936 8331015 -142452538 + MIR SINE MIR 171 248 -14 4437 230 112 104 chr11 8331457 8331625 -142451928 - HAL1 LINE L1 -50 2457 2292 1795 164 3 6 chr11 8331625 8331937 -142451616 - AluJb SINE Alu -1 311 1 4437 230 112 104 chr11 8331937 8332854 -142450699 - HAL1 LINE L1 -215 2292 1384 1904 141 3 20 chr11 8332854 8333160 -142450393 - AluSx SINE Alu -8 304 4 4437 230 112 104 chr11 8333160 8334501 -142449052 - HAL1 LINE L1 -1123 1384 10 1932 139 0 7 chr11 8334535 8334844 -142448709 - AluJb SINE Alu -2 310 4 1909 115 0 57 chr11 8337301 8337496 -142446057 - AluSx SINE Alu 0 312 142 2393 84 0 0 chr11 8337496 8337806 -142445747 - AluSg SINE Alu 0 310 1 1909 115 0 57 chr11 8337806 8337941 -142445612 - AluSx SINE Alu -170 142 1 1881 127 3 45 chr11 8338290 8338604 -142444949 + AluSx SINE Alu 1 301 -11 2352 78 7 0 chr11 8341089 8341398 -142442155 + AluSp SINE Alu 2 312 -1 207 0 0 0 chr11 8341398 8341421 -142442132 + (TA)n Simple_repeat Simple_repeat 1 23 0 2236 106 0 0 chr11 8341826 8342129 -142441424 + AluSq SINE Alu 3 305 -8 180 305 0 17 chr11 8343549 8343608 -142439945 - L2 LINE L2 -7 3265 3208 897 252 74 0 chr11 8343959 8344189 -142439364 - MIR SINE MIR -14 248 2 744 236 13 41 chr11 8344301 8344525 -142439028 - MIR SINE MIR -3 259 46 726 44 0 0 chr11 8344843 8344933 -142438620 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 1615 91 0 18 chr11 8344934 8345155 -142438398 - AluSg/x SINE Alu -15 295 79 671 229 120 26 chr11 8346226 8346492 -142437061 + L1ME4a LINE L1 5767 6057 -64 1801 154 0 7 chr11 8346578 8346870 -142436683 + AluJb SINE Alu 9 298 -14 856 133 108 0 chr11 8346892 8347050 -142436503 + L1MD3 LINE L1 7811 7985 -10 334 325 79 0 chr11 8348915 8349041 -142434512 + L2 LINE L2 3136 3271 -1 2277 83 0 10 chr11 8349808 8350121 -142433432 + AluSg SINE Alu 1 310 0 363 73 0 0 chr11 8350459 8350514 -142433039 + (TG)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr11 8350724 8350745 -142432808 + AT_rich Low_complexity Low_complexity 1 21 0 991 255 140 46 chr11 8350922 8351545 -142432008 - L2 LINE L2 -6 3307 2660 1504 161 79 4 chr11 8351581 8351860 -142431693 + AluJo SINE Alu 1 300 -12 686 287 99 28 chr11 8351944 8352441 -142431112 - L1MC4a LINE L1 -327 5794 5297 304 127 48 0 chr11 8352805 8352868 -142430685 + (TATG)n Simple_repeat Simple_repeat 2 67 0 336 339 120 16 chr11 8353037 8353353 -142430200 - L2 LINE L2 -527 2787 2439 1577 273 102 30 chr11 8354062 8354805 -142428748 + L2 LINE L2 1458 2254 -1060 598 280 5 16 chr11 8354979 8355167 -142428386 - Charlie7 DNA MER1_type -1927 685 500 1375 188 4 0 chr11 8355167 8355396 -142428157 + Tigger7 DNA MER2_type 1 230 -2257 301 226 0 5 chr11 8355431 8355516 -142428037 + Tigger7 DNA MER2_type 148 230 -321 278 233 0 0 chr11 8355504 8355564 -142427989 + Tigger7 DNA MER2_type 159 218 -2269 * 298 222 0 0 chr11 8355564 8355636 -142427917 + Tigger7 DNA MER2_type 159 230 -503 * 1512 153 45 9 chr11 8355611 8355971 -142427582 + Tigger7 DNA MER2_type 148 2555 -32 482 303 73 33 chr11 8356072 8356551 -142427002 - Charlie7 DNA MER1_type -2110 502 5 1168 290 51 17 chr11 8356565 8356975 -142426578 + L2 LINE L2 2292 2715 -599 1042 154 192 0 chr11 8356991 8357199 -142426354 + AluJb SINE Alu 35 282 -30 306 0 0 0 chr11 8357208 8357242 -142426311 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 439 333 77 6 chr11 8357242 8357425 -142426128 + L2 LINE L2 2705 2900 -414 1268 171 103 21 chr11 8357454 8357755 -142425798 - AluJo SINE Alu 0 312 1 709 244 83 64 chr11 8357759 8358071 -142425482 + L2 LINE L2 2996 3313 0 26 0 0 0 chr11 8359897 8359923 -142423630 + AT_rich Low_complexity Low_complexity 1 26 0 1936 131 0 7 chr11 8359925 8360216 -142423337 + AluSq SINE Alu 1 289 -24 741 201 81 17 chr11 8360755 8360929 -142422624 + MIR SINE MIR 76 260 -2 1861 115 3 55 chr11 8361104 8361416 -142422137 - AluSx SINE Alu -16 296 1 677 199 22 44 chr11 8361542 8361678 -142421875 - FLAM_A SINE Alu 0 133 1 292 286 41 20 chr11 8361811 8361909 -142421644 + L2 LINE L2 2971 3070 -202 201 272 44 105 chr11 8362070 8362184 -142421369 - L2 LINE L2 -94 3178 3072 286 349 28 9 chr11 8362589 8362698 -142420855 + L2 LINE L2 3202 3312 -1 2073 104 3 0 chr11 8363375 8363663 -142419890 - AluSx SINE Alu -23 289 1 1251 151 67 77 chr11 8363689 8363987 -142419566 + AluJb SINE Alu 1 295 -17 295 249 41 38 chr11 8364019 8364200 -142419353 - MIR SINE MIR -1 261 28 1718 159 21 3 chr11 8364474 8364764 -142418789 - AluJo SINE Alu -17 295 1 182 308 48 39 chr11 8366511 8366615 -142416938 - L2 LINE L2 -10 3262 3158 548 283 105 54 chr11 8367112 8367426 -142416127 - L3 LINE CR1 -37 1540 1211 213 304 0 0 chr11 8367535 8367581 -142415972 + L2 LINE L2 3149 3194 -78 1257 156 93 30 chr11 8367780 8368049 -142415504 + AluJo SINE Alu 1 286 -26 25 51 0 0 chr11 8368049 8368088 -142415465 + AT_rich Low_complexity Low_complexity 1 39 0 814 261 26 34 chr11 8369207 8369392 -142414161 + MIR SINE MIR 31 216 -46 1225 159 121 42 chr11 8369392 8369691 -142413862 + AluJb SINE Alu 1 320 0 814 261 26 34 chr11 8369691 8369738 -142413815 + MIR SINE MIR 216 262 0 482 291 199 0 chr11 8369740 8369946 -142413607 + MIR SINE MIR 12 258 -4 524 276 191 0 chr11 8370629 8370839 -142412714 + MIR SINE MIR 3 252 -10 447 284 47 27 chr11 8370877 8371025 -142412528 + MIR3 SINE MIR 37 187 -21 338 311 22 0 chr11 8371136 8371226 -142412327 - L2 LINE L2 -1 3271 3180 605 280 71 22 chr11 8372245 8372470 -142411083 - MIR SINE MIR -8 254 19 3123 216 54 4 chr11 8373273 8374036 -142409517 - L2 LINE L2 -1115 2199 1399 1397 246 126 28 chr11 8377057 8377897 -142405656 - L2 LINE L2 -16 3297 2373 1430 245 130 25 chr11 8377908 8378396 -142405157 + MLT1G1 LTR MaLR 10 588 -7 540 249 138 44 chr11 8378405 8378630 -142404923 - L2 LINE L2 -941 2373 2128 694 236 79 47 chr11 8379892 8380146 -142403407 - L2 LINE L2 0 3313 3052 2135 112 0 13 chr11 8381361 8381674 -142401879 + AluSx SINE Alu 1 309 -3 1225 207 0 0 chr11 8381883 8382100 -142401453 + MIR SINE MIR 45 261 -1 747 260 25 13 chr11 8382835 8383070 -142400483 + L1MC4 LINE L1 7298 7535 -507 4347 170 35 43 chr11 8383087 8383295 -142400258 + L1MB8 LINE L1 5129 5337 -841 2387 82 0 0 chr11 8383295 8383600 -142399953 + AluY SINE Alu 1 305 -6 4347 170 35 43 chr11 8383600 8384428 -142399125 + L1MB8 LINE L1 5337 6161 -17 1198 228 49 9 chr11 8384527 8384856 -142398697 + L1MC4 LINE L1 7558 7899 -143 246 62 0 0 chr11 8384856 8384888 -142398665 + (TG)n Simple_repeat Simple_repeat 2 33 0 660 138 9 158 chr11 8384906 8385103 -142398450 + L1M4 LINE L1 5153 5260 -886 7095 57 12 0 chr11 8385103 8386715 -142396838 + L1PA7 LINE L1 4530 6153 -1 660 138 9 158 chr11 8386715 8386829 -142396724 + L1M4 LINE L1 5260 5389 -757 345 157 41 99 chr11 8386826 8386947 -142396606 + L1MC4 LINE L1 7928 8041 -1 * 405 227 11 0 chr11 8387512 8387600 -142395953 - MIR SINE MIR -128 134 46 678 283 143 0 chr11 8388272 8388502 -142395051 + MLT1K LTR MaLR 303 565 -23 615 277 51 11 chr11 8388897 8389074 -142394479 - MIR SINE MIR -74 188 5 349 225 0 14 chr11 8389195 8389266 -142394287 - MIR3 SINE MIR -52 156 87 211 289 172 31 chr11 8390299 8390427 -142393126 - L2 LINE L2 -3 3310 3165 451 288 78 38 chr11 8390492 8390889 -142392664 - L2 LINE L2 -193 3079 2624 509 268 24 0 chr11 8390903 8391030 -142392523 + MIR SINE MIR 133 262 0 24 0 0 0 chr11 8392030 8392054 -142391499 + GC_rich Low_complexity Low_complexity 1 24 0 192 77 0 0 chr11 8393494 8393520 -142390033 + (T)n Simple_repeat Simple_repeat 1 26 0 200 226 0 19 chr11 8393653 8393706 -142389847 + T-rich Low_complexity Low_complexity 2 53 0 1684 185 7 0 chr11 8395053 8395345 -142388208 - AluJb SINE Alu -18 294 1 182 309 74 0 chr11 8395893 8395974 -142387579 - L2 LINE L2 -12 3260 3174 1892 253 34 86 chr11 8396020 8397030 -142386523 - L2 LINE L2 -1 3312 2363 2329 63 0 31 chr11 8397030 8397348 -142386205 + AluY SINE Alu 1 308 -3 1892 253 34 86 chr11 8397348 8397420 -142386133 - L2 LINE L2 -950 2363 2289 280 256 26 13 chr11 8397637 8397715 -142385838 - L3 LINE CR1 -11 1566 1488 2034 90 73 0 chr11 8398746 8399034 -142384519 - AluSc SINE Alu 0 309 1 1565 144 16 88 chr11 8399037 8399356 -142384197 - AluJo SINE Alu -16 296 1 2022 145 3 0 chr11 8399548 8399859 -142383694 + AluSx SINE Alu 1 312 0 1114 281 82 36 chr11 8399897 8400694 -142382859 - L2 LINE L2 -46 3267 2443 188 283 50 0 chr11 8400778 8400838 -142382715 - MIR SINE MIR -132 130 68 650 302 152 15 chr11 8401036 8401437 -142382116 - L2 LINE L2 -876 2438 1983 305 244 7 0 chr11 8401441 8401511 -142382042 + L1PA8A LINE L1 5697 5770 -351 558 267 144 65 chr11 8401674 8402112 -142381441 + MLT1L LTR MaLR 3 581 -34 44 35 0 0 chr11 8402142 8402200 -142381353 + AT_rich Low_complexity Low_complexity 1 58 0 532 265 105 52 chr11 8402200 8402297 -142381256 - HAL1 LINE L1 -140 2367 2277 2023 139 0 0 chr11 8402297 8402598 -142380955 - AluJb SINE Alu -11 301 1 532 265 105 52 chr11 8402598 8402824 -142380729 - HAL1 LINE L1 -230 2277 2027 1860 222 122 36 chr11 8402846 8403199 -142380354 - HAL1 LINE L1 -540 1967 1646 2118 88 7 17 chr11 8403199 8403496 -142380057 - AluSg SINE Alu -16 294 1 1860 222 122 36 chr11 8403496 8403751 -142379802 - HAL1 LINE L1 -861 1646 1307 1075 265 48 46 chr11 8403983 8404420 -142379133 - MLT1J1 LTR MaLR -4 442 5 424 261 72 50 chr11 8404453 8404633 -142378920 - HAL1 LINE L1 -2291 216 33 327 272 34 82 chr11 8404744 8404814 -142378739 + L1MC4a LINE L1 5785 5846 -1962 2320 69 0 0 chr11 8404814 8405103 -142378450 - AluY SINE Alu -20 291 3 327 272 34 82 chr11 8405103 8405179 -142378374 + L1MC4a LINE L1 5846 5924 -1884 1965 116 0 20 chr11 8405294 8405621 -142377932 - AluSx SINE Alu 0 321 1 234 321 23 30 chr11 8405703 8405834 -142377719 - L2 LINE L2 -1317 1997 1868 1794 153 7 3 chr11 8409088 8409388 -142374165 - AluJb SINE Alu -11 301 1 2587 43 0 0 chr11 8410659 8410962 -142372591 + AluY SINE Alu 1 303 -8 2314 73 3 0 chr11 8410976 8411277 -142372276 + AluSp SINE Alu 1 302 -11 206 320 13 26 chr11 8411472 8411550 -142372003 + MIR SINE MIR 31 107 -155 2343 90 0 0 chr11 8411564 8411875 -142371678 + AluSq SINE Alu 1 311 -2 279 272 184 8 chr11 8413088 8413213 -142370340 - MIR3 SINE MIR -32 176 30 2598 59 3 0 chr11 8414633 8414938 -142368615 - AluY SINE Alu -5 306 1 318 297 189 0 chr11 8415680 8415828 -142367725 + MIR SINE MIR 68 243 -19 1986 115 32 38 chr11 8415905 8416219 -142367334 + AluJo SINE Alu 1 312 0 182 175 0 25 chr11 8416483 8416523 -142367030 - MIR SINE MIR -137 125 87 390 21 0 0 chr11 8416559 8416606 -142366947 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 6345 76 19 45 chr11 8416606 8417566 -142365987 - SVA Other Other -19 1367 433 1063 90 15 25 chr11 8417580 8417781 -142365772 - SVA Other Other -592 794 596 5819 68 20 65 chr11 8417813 8418717 -142364836 - SVA Other Other -520 866 4 205 283 68 88 chr11 8418928 8419016 -142364537 + L3 LINE CR1 730 818 -759 2359 87 0 0 chr11 8419016 8419304 -142364249 + AluY SINE Alu 1 288 -23 205 283 68 88 chr11 8419304 8419420 -142364133 + L3 LINE CR1 818 930 -647 1616 140 0 4 chr11 8419808 8420043 -142363510 + AluJo SINE Alu 28 261 -51 2170 112 0 0 chr11 8420408 8420693 -142362860 - AluSx SINE Alu -19 293 9 216 154 0 0 chr11 8421454 8421506 -142362047 + (TA)n Simple_repeat Simple_repeat 1 52 0 1993 110 0 28 chr11 8421513 8421795 -142361758 - AluSx SINE Alu -25 287 14 2112 139 0 3 chr11 8422225 8422526 -142361027 + AluSx SINE Alu 1 300 -12 664 221 62 87 chr11 8422544 8422866 -142360687 + HAL1 LINE L1 46 359 -2148 198 103 0 0 chr11 8422896 8422925 -142360628 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 2067 140 3 0 chr11 8423024 8423316 -142360237 - AluJb SINE Alu -19 293 1 2203 260 151 15 chr11 8423372 8424215 -142359338 + L2 LINE L2 355 1311 -2003 722 215 164 7 chr11 8424215 8424488 -142359065 - MER58B DNA MER1_type 0 341 8 394 194 342 0 chr11 8424495 8424650 -142358903 + L2 LINE L2 1304 1511 -1803 399 207 236 0 chr11 8424664 8424804 -142358749 + L2 LINE L2 3141 3313 0 2176 89 62 3 chr11 8424870 8425161 -142358392 - AluSg SINE Alu -2 308 1 477 212 84 96 chr11 8425239 8425489 -142358064 + MER112 DNA MER1_type 8 254 -6 1999 94 67 0 chr11 8425533 8425800 -142357753 - AluSx SINE Alu -17 295 11 549 264 164 9 chr11 8425812 8426032 -142357521 + HAL1 LINE L1 785 1038 -1469 1991 149 88 24 chr11 8426059 8426468 -142357085 + L1MA7 LINE L1 5856 6290 -1 30 27 0 0 chr11 8426470 8426507 -142357046 + AT_rich Low_complexity Low_complexity 1 37 0 293 215 156 15 chr11 8426516 8426651 -142356902 + HAL1 LINE L1 1051 1204 -1303 * 570 252 67 50 chr11 8426642 8426880 -142356673 + HAL1 LINE L1 1823 2064 -443 713 247 100 39 chr11 8426913 8427273 -142356280 + HAL1 LINE L1 2126 2507 0 2313 93 3 10 chr11 8427335 8427647 -142355906 - AluSq SINE Alu -1 312 3 2043 98 0 0 chr11 8427647 8427902 -142355651 - AluSq SINE Alu -58 255 1 229 143 0 89 chr11 8429027 8429083 -142354470 - L2 LINE L2 -78 3235 3185 911 134 139 9 chr11 8429493 8429716 -142353837 - MER33 DNA MER1_type -48 276 25 2012 67 6 103 chr11 8430269 8430599 -142352954 + AluSx SINE Alu 1 298 -14 270 221 52 13 chr11 8430647 8430724 -142352829 - MIR3 SINE MIR -52 156 77 268 331 57 24 chr11 8432920 8433044 -142350509 + L2 LINE L2 3137 3264 -8 2434 66 0 10 chr11 8435056 8435359 -142348194 + AluSx SINE Alu 1 300 -12 2208 132 3 0 chr11 8435599 8435910 -142347643 + AluSx SINE Alu 1 312 0 1383 189 28 0 chr11 8436628 8436876 -142346677 - AluJo SINE Alu -57 255 1 2256 104 7 0 chr11 8437168 8437466 -142346087 + AluSp SINE Alu 1 300 -13 2309 92 3 3 chr11 8437565 8437857 -142345696 - AluSg SINE Alu -18 292 1 2495 72 0 7 chr11 8437857 8438162 -142345391 - AluSp SINE Alu -10 303 1 1549 117 44 0 chr11 8438170 8438419 -142345134 - L1MA5A LINE L1 -5 6292 6033 1749 183 0 7 chr11 8439017 8439323 -142344230 + AluJo SINE Alu 1 304 -8 180 111 0 0 chr11 8439863 8439890 -142343663 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 3703 103 13 26 chr11 8440243 8440777 -142342776 + MER1A DNA MER1_type 1 527 0 2444 88 0 0 chr11 8440871 8441166 -142342387 - AluSg SINE Alu -15 295 1 2733 222 88 9 chr11 8441339 8441448 -142342105 - L1MB7 LINE L1 -9 6175 6076 2082 112 53 0 chr11 8441448 8441733 -142341820 + AluSx SINE Alu 1 300 -12 2733 222 88 9 chr11 8441733 8442295 -142341258 - L1MB7 LINE L1 -108 6076 5451 1869 163 7 3 chr11 8443326 8443626 -142339927 + AluJo SINE Alu 1 301 -11 216 67 0 0 chr11 8443727 8443757 -142339796 + (TA)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr11 8443759 8443785 -142339768 + (TG)n Simple_repeat Simple_repeat 2 27 0 2240 100 0 10 chr11 8443911 8444211 -142339342 - AluSx SINE Alu -15 297 1 2410 68 0 23 chr11 8444256 8444565 -142338988 - AluY SINE Alu -9 302 1 25 0 0 0 chr11 8444582 8444607 -142338946 + AT_rich Low_complexity Low_complexity 1 25 0 957 143 14 0 chr11 8445998 8446145 -142337408 + FAM SINE Alu 27 175 -10 352 161 0 0 chr11 8446148 8446204 -142337349 + FLAM SINE Alu 76 131 -2 27 62 0 0 chr11 8449099 8449147 -142334406 + AT_rich Low_complexity Low_complexity 1 48 0 5081 190 55 30 chr11 8449149 8449680 -142333873 + L1MC1 LINE L1 3788 4305 -1841 983 166 12 12 chr11 8449680 8449843 -142333710 + FAM SINE Alu 2 164 -11 5081 190 55 30 chr11 8449843 8450557 -142332996 + L1MC1 LINE L1 4305 5063 -1083 5878 138 58 18 chr11 8450571 8451197 -142332356 + L1MC1 LINE L1 5237 5921 -412 2582 63 0 16 chr11 8451197 8451513 -142332040 + AluY SINE Alu 1 311 0 5878 138 58 18 chr11 8451513 8451932 -142331621 + L1MC1 LINE L1 5921 6322 -11 2129 115 14 0 chr11 8451935 8452222 -142331331 + AluSx SINE Alu 1 291 -21 1158 164 200 0 chr11 8452244 8452469 -142331084 + AluJb SINE Alu 21 290 -22 21 0 0 0 chr11 8452490 8452511 -142331042 + AT_rich Low_complexity Low_complexity 1 21 0 322 165 141 47 chr11 8452566 8452651 -142330902 + HY4 scRNA scRNA 1 93 0 324 228 331 7 chr11 8453234 8453379 -142330174 + MIR3 SINE MIR 15 206 -2 324 0 0 0 chr11 8454665 8454701 -142328852 + (TG)n Simple_repeat Simple_repeat 2 37 0 1672 217 6 9 chr11 8455018 8455363 -142328190 + MER2 DNA MER2_type 1 344 0 384 263 68 8 chr11 8455371 8455504 -142328049 - MIR SINE MIR -71 191 51 1417 216 57 3 chr11 8455767 8456063 -142327490 + AluJo SINE Alu 1 312 0 1198 229 138 52 chr11 8456343 8456490 -142327063 + MER113 DNA MER1_type? 1 134 -387 2327 88 0 7 chr11 8456490 8456787 -142326766 + AluSg SINE Alu 1 295 -15 1198 229 138 52 chr11 8456787 8456923 -142326630 + MER113 DNA MER1_type? 134 257 -264 1826 168 3 7 chr11 8456923 8457232 -142326321 + AluJb SINE Alu 1 308 -4 1198 229 138 52 chr11 8457232 8457389 -142326164 + MER113 DNA MER1_type? 257 480 -41 2360 86 0 7 chr11 8457480 8457782 -142325771 + AluSc SINE Alu 1 300 -9 2366 82 3 0 chr11 8458994 8459288 -142324265 + AluY SINE Alu 1 295 -16 2332 52 4 0 chr11 8459288 8459559 -142323994 + AluY SINE Alu 1 273 -38 200 329 25 13 chr11 8459592 8459671 -142323882 + MIR SINE MIR 108 187 -75 2178 107 3 10 chr11 8459712 8460002 -142323551 - AluSg SINE Alu -22 288 1 859 144 0 0 chr11 8460009 8460134 -142323419 - FLAM_C SINE Alu -18 125 1 323 300 67 25 chr11 8460532 8460652 -142322901 + L2 LINE L2 3137 3261 -11 1788 153 8 67 chr11 8460861 8461220 -142322333 + LTR64 LTR ERVK 1 338 -220 2229 88 3 0 chr11 8461396 8461701 -142321852 - AluY SINE Alu -5 306 1 516 275 141 58 chr11 8461808 8461961 -142321592 - MLT1K LTR MaLR -3 585 446 571 207 83 0 chr11 8461961 8462082 -142321471 + FLAM_A SINE Alu 1 131 -2 516 275 141 58 chr11 8462082 8462375 -142321178 - MLT1K LTR MaLR -142 446 102 1940 114 6 46 chr11 8464199 8464339 -142319214 + AluSx SINE Alu 1 145 -167 2092 98 0 14 chr11 8464339 8464635 -142318918 + AluSg1 SINE Alu 1 292 -17 1940 114 6 46 chr11 8464635 8464818 -142318735 + AluSx SINE Alu 145 311 -1 730 142 7 71 chr11 8465139 8465280 -142318273 + MER52A LTR ERV1 554 685 -1070 2328 79 3 0 chr11 8465578 8465881 -142317672 - AluSc SINE Alu -5 304 1 1792 156 3 3 chr11 8465891 8466180 -142317373 - AluSx SINE Alu -12 300 12 2295 175 66 2 chr11 8466808 8467231 -142316322 - MLT1C LTR MaLR 0 467 18 709 180 0 23 chr11 8467232 8467360 -142316193 + FLAM_A SINE Alu 5 129 -4 513 155 194 0 chr11 8467362 8467465 -142316088 + AluJo/FRAM SINE Alu 136 258 -54 1865 145 7 0 chr11 8467819 8468116 -142315437 + AluSq SINE Alu 1 299 -14 901 102 58 0 chr11 8469715 8469852 -142313701 + AluJb SINE Alu 168 312 0 1941 109 4 4 chr11 8471469 8471773 -142311780 - AluSx SINE Alu 0 314 11 1528 119 96 41 chr11 8472123 8472416 -142311137 + AluSx SINE Alu 2 310 -2 1099 136 0 0 chr11 8473637 8473799 -142309754 - FRAM SINE Alu -13 163 2 1570 160 12 58 chr11 8474086 8474411 -142309142 + AluJo SINE Alu 1 310 -2 1691 171 3 24 chr11 8475189 8475487 -142308066 - AluJo SINE Alu -20 292 1 2308 71 7 3 chr11 8476090 8476399 -142307154 + AluY SINE Alu 1 310 -1 310 289 164 19 chr11 8478938 8479042 -142304511 + MIR SINE MIR 25 143 -119 1949 112 13 39 chr11 8479771 8479907 -142303646 + AluSx SINE Alu 1 139 -173 2223 84 10 10 chr11 8479907 8480218 -142303335 + AluY SINE Alu 1 311 0 1949 112 13 39 chr11 8480218 8480386 -142303167 + AluSx SINE Alu 139 297 -15 1456 137 9 4 chr11 8480449 8480676 -142302877 + AluJo SINE Alu 85 312 0 304 197 61 0 chr11 8480730 8480796 -142302757 - FAM SINE Alu -17 158 89 1982 126 0 23 chr11 8482538 8482847 -142300706 + AluSx SINE Alu 1 302 -10 2356 63 0 25 chr11 8482847 8483166 -142300387 + AluY SINE Alu 1 311 0 380 226 165 9 chr11 8483211 8483326 -142300227 + L2 LINE L2 3177 3309 -4 2438 36 7 3 chr11 8483807 8484109 -142299444 - AluSp SINE Alu -10 303 1 22 0 0 0 chr11 8484109 8484131 -142299422 + AT_rich Low_complexity Low_complexity 1 22 0 222 45 0 106 chr11 8485047 8485113 -142298440 + (CGGGGG)n Simple_repeat Simple_repeat 2 60 0 252 0 0 0 chr11 8485295 8485323 -142298230 + (CA)n Simple_repeat Simple_repeat 2 29 0 1026 144 20 5 chr11 8485359 8485554 -142297999 + AluSg/x SINE Alu 95 292 -20 380 141 0 14 chr11 8486487 8486558 -142296995 + (TTCTCC)n Simple_repeat Simple_repeat 4 73 0 702 155 7 49 chr11 8486558 8486700 -142296853 - AluJ SINE Alu 0 312 177 404 121 0 15 chr11 8486694 8486760 -142296793 - AluJ SINE Alu -161 151 87 * 319 235 20 29 chr11 8486760 8486862 -142296691 + MIR SINE MIR 65 165 -97 228 325 48 32 chr11 8486858 8486984 -142296569 + L2 LINE L2 3186 3313 0 * 357 263 21 0 chr11 8486982 8487077 -142296476 + MIR SINE MIR 166 262 0 190 167 67 50 chr11 8487076 8487136 -142296417 - L2 LINE L2 -33 3280 3220 * 188 372 21 21 chr11 8487254 8487348 -142296205 - L2 LINE L2 -211 3061 2968 517 211 28 18 chr11 8487432 8487541 -142296012 + MIR SINE MIR 153 262 0 294 298 133 40 chr11 8487756 8487907 -142295646 + L2 LINE L2 3099 3263 -9 1652 161 0 21 chr11 8487970 8488261 -142295292 + AluJo SINE Alu 9 293 -19 26 64 0 0 chr11 8488432 8488479 -142295074 + AT_rich Low_complexity Low_complexity 1 47 0 2300 76 20 0 chr11 8489464 8489765 -142293788 + AluY SINE Alu 1 307 -4 2137 211 41 12 chr11 8489770 8490282 -142293271 - L1MB7 LINE L1 -15 6169 5643 6040 220 76 43 chr11 8490305 8492047 -142291506 - L1MB7 LINE L1 -901 5245 3431 1471 145 0 38 chr11 8492047 8492309 -142291244 - AluJb SINE Alu -5 307 56 6040 220 76 43 chr11 8492309 8492524 -142291029 - L1MB7 LINE L1 -2715 3431 3224 1335 126 9 23 chr11 8492533 8492748 -142290805 - AluSg/x SINE Alu -16 294 83 616 238 77 28 chr11 8492763 8492804 -142290749 + L1MEc LINE L1 2181 2219 -3996 1912 90 0 0 chr11 8492804 8493048 -142290505 + AluSc SINE Alu 1 244 -65 616 238 77 28 chr11 8493048 8493254 -142290299 + L1MEc LINE L1 2219 2399 -3816 646 178 0 0 chr11 8493254 8493361 -142290192 + MLT1D LTR MaLR 355 461 -44 3404 196 30 54 chr11 8493373 8493620 -142289933 + L1MEc LINE L1 2384 2636 -3579 2235 102 0 0 chr11 8493620 8493915 -142289638 - AluSg SINE Alu -15 295 1 3404 196 30 54 chr11 8493915 8494431 -142289122 + L1MEc LINE L1 2636 3122 -3093 2363 97 0 0 chr11 8494431 8494741 -142288812 + AluSx SINE Alu 1 310 -2 3404 196 30 54 chr11 8494741 8494913 -142288640 + L1MEc LINE L1 3122 3297 -2918 632 128 0 0 chr11 8494916 8495002 -142288551 + AluS SINE Alu 2 87 -226 2029 105 0 7 chr11 8495004 8495281 -142288272 - AluSq SINE Alu -38 275 1 2839 243 63 39 chr11 8495293 8495347 -142288206 - L1M4c LINE L1 -4320 2818 2767 1786 171 0 10 chr11 8495347 8495516 -142288037 - AluJb SINE Alu -10 302 136 2142 85 7 30 chr11 8495516 8495821 -142287732 - AluY SINE Alu -13 298 1 1786 171 0 10 chr11 8495821 8495956 -142287597 - AluJb SINE Alu -176 136 1 2839 243 63 39 chr11 8495956 8497180 -142286373 - L1M4c LINE L1 -4371 2767 1364 828 234 114 0 chr11 8497180 8497381 -142286172 - MER58A DNA MER1_type 0 224 1 2839 243 63 39 chr11 8497381 8497543 -142286010 - L1M4c LINE L1 -5774 1364 1207 264 59 0 0 chr11 8497566 8497600 -142285953 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 617 214 0 0 chr11 8497604 8497716 -142285837 - FLAM_A SINE Alu -18 115 4 388 268 24 16 chr11 8497768 8497891 -142285662 - L1M4c LINE L1 -5667 1188 1065 1127 250 54 11 chr11 8497903 8498183 -142285370 + AluJo SINE Alu 13 304 -8 340 351 80 12 chr11 8498186 8498437 -142285116 - L1M4c LINE L1 -5792 1063 796 246 256 78 124 chr11 8498556 8498697 -142284856 - L1M4c LINE L1 -6613 246 100 1865 102 3 67 chr11 8498697 8499010 -142284543 - AluSx SINE Alu -19 293 1 246 256 78 124 chr11 8499010 8499053 -142284500 - L1M4c LINE L1 -6759 100 57 2343 143 6 0 chr11 8499053 8499417 -142284136 - MER47A DNA MER2_type 0 366 1 246 256 78 124 chr11 8499417 8499489 -142284064 - L1M4c LINE L1 -6802 57 1 744 178 0 8 chr11 8500042 8500171 -142283382 + FLAM_C SINE Alu 1 128 -5 21 0 0 0 chr11 8500183 8500204 -142283349 + AT_rich Low_complexity Low_complexity 1 21 0 1765 179 8 11 chr11 8500204 8500561 -142282992 - L1MB3 LINE L1 -16 6403 6048 43481 52 1 1 chr11 8500564 8506697 -142276856 - L1PA5 LINE L1 -8 6146 11 3280 162 19 14 chr11 8506706 8507585 -142275968 - L1MB3 LINE L1 -346 6061 5180 2188 138 59 0 chr11 8507586 8507942 -142275611 - L1MB3 LINE L1 -5972 412 36 208 373 20 46 chr11 8508557 8508710 -142274843 + MIR3 SINE MIR 14 162 -46 2250 84 3 39 chr11 8508835 8509144 -142274409 + AluSp SINE Alu 1 298 -15 1901 127 26 39 chr11 8509730 8510037 -142273516 + AluJb SINE Alu 1 303 -9 954 163 35 23 chr11 8511476 8511648 -142271905 + FRAM SINE Alu 3 176 0 197 189 0 0 chr11 8511744 8511781 -142271772 + MIR SINE MIR 220 256 -6 197 343 50 20 chr11 8511931 8512030 -142271523 - MIR SINE MIR -82 126 25 32 0 0 0 chr11 8512936 8512968 -142270585 + AT_rich Low_complexity Low_complexity 1 32 0 1803 180 0 0 chr11 8512974 8513258 -142270295 - AluJo SINE Alu -28 284 1 288 326 69 100 chr11 8513416 8513677 -142269876 - L2 LINE L2 -8 3264 3012 405 307 122 22 chr11 8513767 8514037 -142269516 - L2 LINE L2 -970 2344 2048 1164 213 105 45 chr11 8514068 8514119 -142269434 + HAL1 LINE L1 1012 1058 -1449 2017 119 6 29 chr11 8514119 8514430 -142269123 + AluSx SINE Alu 1 304 -8 1164 213 105 45 chr11 8514430 8514805 -142268748 + HAL1 LINE L1 1058 1464 -1043 571 211 8 0 chr11 8514832 8514955 -142268598 + HAL1 LINE L1 1658 1781 -726 415 243 72 0 chr11 8515244 8515355 -142268198 - FRAM SINE Alu -11 165 47 288 0 0 0 chr11 8515579 8515611 -142267942 + (CA)n Simple_repeat Simple_repeat 2 33 0 229 250 13 66 chr11 8516203 8516279 -142267274 - MER5B DNA MER1_type -78 100 29 192 301 106 8 chr11 8516399 8516522 -142267031 + L2 LINE L2 2686 2820 -494 683 229 78 69 chr11 8516522 8516844 -142266709 - MLT1I LTR MaLR 0 409 73 3041 155 86 29 chr11 8516897 8517279 -142266274 - L1MB5 LINE L1 0 6174 5742 2167 107 31 0 chr11 8517279 8517569 -142265984 + AluSx SINE Alu 1 299 -13 3041 155 86 29 chr11 8517569 8517800 -142265753 - L1MB5 LINE L1 -432 5742 5526 812 89 0 0 chr11 8518441 8518542 -142265011 + HY3 scRNA scRNA 1 101 0 2549 66 0 7 chr11 8518555 8518860 -142264693 + AluY SINE Alu 1 303 -8 2214 106 0 7 chr11 8519048 8519349 -142264204 - AluSx SINE Alu 0 312 14 35 41 0 0 chr11 8519608 8519657 -142263896 + AT_rich Low_complexity Low_complexity 1 49 0 934 127 0 0 chr11 8519735 8519853 -142263700 - FLAM_C SINE Alu -15 118 1 1056 159 6 0 chr11 8519975 8520145 -142263408 - MER47A DNA MER2_type -194 172 2 1382 145 93 93 chr11 8520228 8520539 -142263014 + AluJo SINE Alu 1 311 -1 2425 70 0 0 chr11 8520616 8520915 -142262638 - AluY SINE Alu -12 299 1 1655 187 3 17 chr11 8521024 8521318 -142262235 - AluJo SINE Alu -22 290 1 414 342 0 0 chr11 8522177 8522297 -142261256 - L2 LINE L2 0 3272 3153 2271 94 7 3 chr11 8523444 8523752 -142259801 - AluSx SINE Alu -3 309 1 23 0 0 0 chr11 8525216 8525239 -142258314 + GC_rich Low_complexity Low_complexity 1 23 0 281 68 23 0 chr11 8525432 8525476 -142258077 + (CA)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chr11 8526262 8526283 -142257270 + AT_rich Low_complexity Low_complexity 1 21 0 2193 92 24 0 chr11 8526283 8526576 -142256977 - AluSx SINE Alu -10 302 3 1378 109 95 5 chr11 8526860 8527071 -142256482 + MER30 DNA MER1_type 1 230 0 292 236 76 125 chr11 8527301 8527445 -142256108 - MIR SINE MIR -94 168 32 2224 125 0 13 chr11 8528077 8528388 -142255165 + AluJb SINE Alu 1 307 -5 225 271 4 4 chr11 8529170 8529228 -142254325 + MIR SINE MIR 21 75 -133 2664 45 0 0 chr11 8529703 8530014 -142253539 + AluY SINE Alu 1 311 0 2763 29 0 0 chr11 8530206 8530512 -142253041 - AluY SINE Alu -5 306 1 1698 191 0 7 chr11 8531718 8532027 -142251526 + AluJb SINE Alu 1 307 -5 2361 86 0 3 chr11 8532755 8533058 -142250495 + AluY SINE Alu 1 302 -9 30 0 0 0 chr11 8533118 8533148 -142250405 + AT_rich Low_complexity Low_complexity 1 30 0 676 175 0 0 chr11 8533156 8533259 -142250294 - FLAM_C SINE Alu -21 122 20 1811 169 0 16 chr11 8533677 8533985 -142249568 + AluJb SINE Alu 1 303 -9 35 54 0 0 chr11 8534060 8534116 -142249437 + AT_rich Low_complexity Low_complexity 1 56 0 5792 156 28 8 chr11 8534119 8534254 -142249299 - L1PB3 LINE L1 -1 6153 6022 186 43 0 0 chr11 8534254 8534277 -142249276 + (TCCC)n Simple_repeat Simple_repeat 1 23 0 5792 156 28 8 chr11 8534277 8536132 -142247421 - L1PB3 LINE L1 -132 6022 4125 2454 29 0 4 chr11 8536699 8537014 -142246539 + AluY SINE Alu 1 314 0 264 216 103 69 chr11 8537253 8537369 -142246184 + L2 LINE L2 2119 2238 -1076 * 616 292 65 0 chr11 8537335 8537520 -142246033 - MIR SINE MIR -7 255 59 217 274 62 53 chr11 8537525 8537638 -142245915 + L2 LINE L2 2579 2692 -622 675 279 183 6 chr11 8537761 8538094 -142245459 + L2 LINE L2 2920 3311 -2 615 258 36 6 chr11 8538422 8538589 -142244964 - MIR3 SINE MIR -21 187 16 309 307 128 38 chr11 8538642 8538961 -142244592 - L2 LINE L2 -361 2953 2606 1958 157 10 0 chr11 8539250 8539555 -142243998 + AluJo SINE Alu 1 308 -4 255 273 0 78 chr11 8540037 8540114 -142243439 - L2 LINE L2 -2 3311 3241 200 160 60 0 chr11 8541067 8541117 -142242436 + CT-rich Low_complexity Low_complexity 3 55 0 1714 180 3 53 chr11 8541119 8541318 -142242235 - AluJb SINE Alu -3 309 131 1706 146 4 0 chr11 8541318 8541571 -142241982 + AluSx SINE Alu 41 294 -18 1714 180 3 53 chr11 8541571 8541694 -142241859 - AluJb SINE Alu -181 131 3 2114 128 0 0 chr11 8541788 8542099 -142241454 + AluSx SINE Alu 1 311 0 1898 157 0 20 chr11 8542123 8542428 -142241125 + AluJo SINE Alu 1 299 -13 352 219 116 43 chr11 8542455 8542619 -142240934 - L1ME4a LINE L1 -73 6048 5873 1334 228 75 28 chr11 8542688 8542884 -142240669 - MLT1A1 LTR MaLR -1 364 146 2362 84 3 7 chr11 8542884 8543194 -142240359 - AluSq SINE Alu -4 309 1 1334 228 75 28 chr11 8543194 8543317 -142240236 - MLT1A1 LTR MaLR -219 146 30 668 272 53 7 chr11 8543568 8543779 -142239774 - L1ME3 LINE L1 -1 6161 5935 712 168 50 17 chr11 8543802 8543921 -142239632 - FLAM_C SINE Alu -19 124 2 339 181 234 0 chr11 8544349 8544443 -142239110 - L1ME4a LINE L1 -12 6109 5994 838 219 96 86 chr11 8544519 8544925 -142238628 - L1ME3 LINE L1 -357 5764 5355 6273 121 39 14 chr11 8544947 8545960 -142237593 - L1MA8 LINE L1 0 6291 5254 1924 146 0 0 chr11 8546143 8546423 -142237130 - AluJb SINE Alu -32 280 1 2204 126 3 0 chr11 8546432 8546734 -142236819 - AluSx SINE Alu -9 303 1 2237 109 7 0 chr11 8546762 8547065 -142236488 - AluSx SINE Alu -7 305 1 278 282 26 0 chr11 8547070 8547148 -142236405 + L2 LINE L2 3227 3306 -7 861 191 39 17 chr11 8547160 8547338 -142236215 + Charlie4 DNA MER1_type 17 198 -1763 182 345 18 0 chr11 8547404 8547459 -142236094 + MIR SINE MIR 201 256 -6 338 194 90 52 chr11 8547629 8547784 -142235769 - L1MC5 LINE L1 -198 7763 7603 21 36 0 0 chr11 8547878 8547906 -142235647 + AT_rich Low_complexity Low_complexity 1 28 0 272 234 16 0 chr11 8550353 8550417 -142233136 - L1ME4a LINE L1 -2032 5776 5712 673 269 97 4 chr11 8550515 8550742 -142232811 + Charlie2 DNA MER1_type 83 330 -2532 * 1413 198 156 80 chr11 8550732 8551236 -142232317 + Charlie2 DNA MER1_type 1855 2444 -418 1865 170 0 22 chr11 8551236 8551553 -142232000 + AluJo SINE Alu 3 312 0 1413 198 156 80 chr11 8551553 8551850 -142231703 + Charlie2 DNA MER1_type 2444 2717 -145 1799 169 3 3 chr11 8551868 8552158 -142231395 - AluJb SINE Alu -22 290 1 327 175 193 9 chr11 8552164 8552278 -142231275 + Charlie2 DNA MER1_type 2696 2830 -32 231 342 54 16 chr11 8552376 8552560 -142230993 - L2 LINE L2 -218 3054 2864 2275 81 30 0 chr11 8552968 8553263 -142230290 + AluSx SINE Alu 1 304 -8 1856 141 0 37 chr11 8554611 8554909 -142228644 - AluJo SINE Alu -15 297 11 207 0 0 0 chr11 8554930 8554953 -142228600 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr11 8554974 8554997 -142228556 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr11 8555072 8555094 -142228459 + AT_rich Low_complexity Low_complexity 1 22 0 273 248 28 50 chr11 8557408 8557549 -142226004 - L1M4 LINE L1 -1020 5126 4989 195 319 77 0 chr11 8557893 8557984 -142225569 + MIR SINE MIR 49 146 -116 2142 108 0 0 chr11 8558630 8558925 -142224628 + AluSg SINE Alu 1 295 -15 1936 136 0 3 chr11 8559260 8559555 -142223998 + AluJb SINE Alu 1 294 -18 2220 101 3 0 chr11 8559557 8559865 -142223688 + AluSg SINE Alu 1 309 -1 233 229 16 0 chr11 8560211 8560272 -142223281 - L2 LINE L2 -811 2503 2442 265 204 0 0 chr11 8560667 8560711 -142222842 + MIR SINE MIR 209 252 -10 696 144 0 0 chr11 8561298 8561416 -142222137 + FLAM_A SINE Alu 19 136 0 272 250 120 10 chr11 8561663 8561763 -142221790 - MIR3 SINE MIR -94 114 4 211 325 18 65 chr11 8561812 8561981 -142221572 + MIR SINE MIR 72 232 -30 299 314 88 51 chr11 8562181 8562318 -142221235 + MIR3 SINE MIR 2 143 -65 1778 144 0 18 chr11 8562336 8562620 -142220933 + AluJo SINE Alu 13 291 -21 561 282 58 0 chr11 8563355 8563511 -142220042 - MIR SINE MIR -49 213 49 441 128 32 85 chr11 8563564 8563658 -142219895 - L1MC3 LINE L1 0 7785 7697 1347 189 65 77 chr11 8564908 8565311 -142218242 - MER21B LTR ERV1 -51 812 415 288 0 0 0 chr11 8565315 8565347 -142218206 + (TG)n Simple_repeat Simple_repeat 2 33 0 2046 123 0 16 chr11 8565936 8566253 -142217300 - AluSx SINE Alu 0 312 1 200 323 15 0 chr11 8566877 8566942 -142216611 + MIR SINE MIR 197 262 0 297 242 0 0 chr11 8567169 8567260 -142216293 + (CA)n Simple_repeat Simple_repeat 1 91 0 247 200 69 77 chr11 8567758 8567888 -142215665 + MER113 DNA MER1_type? 2 130 -391 2263 202 68 31 chr11 8567928 8568448 -142215105 - L1MC4a LINE L1 -94 7714 7172 1621 164 7 20 chr11 8568448 8568746 -142214807 - AluJb SINE Alu -18 294 1 2263 202 68 31 chr11 8568746 8568769 -142214784 - L1MC4a LINE L1 -636 7172 7151 1950 124 0 3 chr11 8569573 8569879 -142213674 - AluSx SINE Alu 0 305 1 236 303 91 40 chr11 8570969 8571144 -142212409 - MIR3 SINE MIR -4 204 21 1758 175 0 16 chr11 8571292 8571595 -142211958 - AluJb SINE Alu -14 298 1 381 300 39 89 chr11 8572074 8572434 -142211119 - L2 LINE L2 -101 3171 2830 1511 184 27 7 chr11 8573126 8573425 -142210128 - AluJo SINE Alu -7 305 1 255 211 19 0 chr11 8573434 8573486 -142210067 - MARNA DNA Mariner -372 214 162 1957 108 0 71 chr11 8574119 8574442 -142209111 - AluSx SINE Alu -12 300 1 831 187 0 0 chr11 8574732 8574871 -142208682 + FLAM_C SINE Alu 2 140 -3 480 280 13 38 chr11 8575096 8575253 -142208300 - MIR SINE MIR -50 212 60 440 229 76 0 chr11 8575289 8575394 -142208159 + MIR SINE MIR 150 262 0 867 151 17 62 chr11 8575553 8575732 -142207821 - AluJ SINE Alu 0 312 142 213 154 0 0 chr11 8576269 8576308 -142207245 + (TG)n Simple_repeat Simple_repeat 2 40 0 271 207 73 24 chr11 8576392 8576412 -142207141 + MER21B LTR ERV1 5 23 -840 342 0 0 0 chr11 8576412 8576450 -142207103 + (GA)n Simple_repeat Simple_repeat 2 39 0 271 207 73 24 chr11 8576450 8576511 -142207042 + MER21B LTR ERV1 23 90 -773 942 128 20 20 chr11 8576651 8576800 -142206753 - AluJ SINE Alu -163 149 1 2025 139 3 3 chr11 8576817 8577126 -142206427 - AluSx SINE Alu -2 310 2 1647 164 11 28 chr11 8578263 8578550 -142205003 + AluJo SINE Alu 1 282 -30 450 0 0 0 chr11 8578553 8578603 -142204950 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1087 128 0 0 chr11 8578796 8578960 -142204593 + FAM SINE Alu 1 45 -4 2053 113 20 0 chr11 8579400 8579693 -142203860 + AluSq SINE Alu 1 299 -14 194 310 42 0 chr11 8580079 8580150 -142203403 + L2 LINE L2 2119 2192 -1122 926 314 75 26 chr11 8580229 8580682 -142202871 - L2 LINE L2 0 3313 2839 858 217 30 0 chr11 8580773 8580939 -142202614 + FRAM SINE Alu 1 171 -5 202 255 21 0 chr11 8580958 8581005 -142202548 + GA-rich Low_complexity Low_complexity 5 52 0 381 102 0 0 chr11 8581256 8581315 -142202238 + (GA)n Simple_repeat Simple_repeat 1 59 0 320 299 99 30 chr11 8583188 8583389 -142200164 + MIR SINE MIR 4 218 -44 183 80 0 0 chr11 8585163 8585188 -142198365 + (A)n Simple_repeat Simple_repeat 1 25 0 306 0 0 0 chr11 8585457 8585491 -142198062 + (TG)n Simple_repeat Simple_repeat 2 35 0 857 223 84 44 chr11 8586897 8587148 -142196405 + MIR SINE MIR 2 262 0 2187 107 3 0 chr11 8587253 8587552 -142196001 + AluSx SINE Alu 1 300 -12 673 254 66 31 chr11 8588252 8588480 -142195073 + MIR SINE MIR 21 256 -6 525 307 0 13 chr11 8588531 8588684 -142194869 + MIR3 SINE MIR 16 166 -42 2118 103 0 0 chr11 8588704 8588994 -142194559 - AluSx SINE Alu -22 290 1 798 262 78 25 chr11 8589500 8589744 -142193809 + MIR SINE MIR 6 262 0 2043 123 7 0 chr11 8589785 8590078 -142193475 - AluSx SINE Alu -17 295 1 542 202 0 0 chr11 8590079 8590178 -142193375 - AluSg/x SINE Alu -4 306 208 203 238 24 0 chr11 8590278 8590320 -142193233 + G-rich Low_complexity Low_complexity 1 43 0 1943 114 24 0 chr11 8591197 8591487 -142192066 - AluSx SINE Alu -15 297 1 551 199 252 0 chr11 8592221 8592372 -142191181 - MER5A DNA MER1_type 0 189 1 197 239 22 0 chr11 8593462 8593508 -142190045 - MIR SINE MIR -134 74 28 182 61 0 30 chr11 8593743 8593776 -142189777 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3174 169 59 45 chr11 8593862 8594559 -142188994 + L1MB4 LINE L1 5474 6180 0 1126 279 45 45 chr11 8594639 8595191 -142188362 - L1ME LINE L1 -303 5818 5267 390 299 106 75 chr11 8595369 8595541 -142188012 - L1ME LINE L1 -1038 5108 4924 2049 103 3 3 chr11 8595541 8595823 -142187730 - AluSx SINE Alu -29 283 2 390 299 106 75 chr11 8595823 8595904 -142187649 - L1ME LINE L1 -1222 4924 4847 1930 119 7 7 chr11 8595970 8596263 -142187290 - AluSx SINE Alu -19 293 1 206 209 0 23 chr11 8596741 8596784 -142186769 - L2 LINE L2 -16 3297 3256 1544 182 3 24 chr11 8596964 8597261 -142186292 - AluJb SINE Alu -21 291 1 180 375 16 16 chr11 8597502 8597630 -142185923 - L2 LINE L2 -213 3059 2932 260 130 0 0 chr11 8597778 8597824 -142185729 - MLT1G1 LTR MaLR -18 577 532 614 99 0 141 chr11 8597886 8598007 -142185546 - AluJo SINE Alu -124 188 85 356 297 0 0 chr11 8598050 8598168 -142185385 - L1MC5 LINE L1 -533 7428 7311 * 571 250 99 16 chr11 8598152 8598344 -142185209 - L1MC4 LINE L1 -547 7495 7288 419 191 23 183 chr11 8598389 8598651 -142184902 - L1MC5 LINE L1 -32 7929 7710 741 164 8 15 chr11 8600272 8600406 -142183147 + FLAM_A SINE Alu 1 133 0 575 265 160 10 chr11 8600598 8600798 -142182755 + MIR SINE MIR 6 235 -27 1784 145 6 25 chr11 8600900 8601218 -142182335 - AluJo SINE Alu 0 312 1 2293 90 0 0 chr11 8602929 8603228 -142180325 - AluSx SINE Alu -8 304 6 995 168 0 66 chr11 8603347 8603573 -142179980 - AluJo SINE Alu -15 297 87 656 237 109 62 chr11 8604109 8604481 -142179072 - L1ME4a LINE L1 -3 6118 5716 1470 175 8 27 chr11 8604481 8604744 -142178809 + AluJo SINE Alu 45 302 -10 656 237 109 62 chr11 8604744 8604868 -142178685 - L1ME4a LINE L1 -405 5716 5599 2487 70 0 3 chr11 8604884 8605186 -142178367 - AluY SINE Alu -10 301 1 520 251 126 13 chr11 8605719 8606124 -142177429 - L1ME LINE L1 -525 5641 5191 243 0 0 0 chr11 8606148 8606175 -142177378 + (TG)n Simple_repeat Simple_repeat 2 28 0 394 313 22 8 chr11 8606175 8606309 -142177244 - L1ME4a LINE L1 -537 5584 5449 285 345 35 9 chr11 8606333 8606449 -142177104 + L2 LINE L2 318 436 -2878 190 340 35 50 chr11 8606547 8606688 -142176865 + L2 LINE L2 628 766 -2548 209 358 103 24 chr11 8607212 8607377 -142176176 + L2 LINE L2 2871 3048 -224 2311 102 3 9 chr11 8607976 8608291 -142175262 + AluSp SINE Alu 1 313 0 272 222 56 11 chr11 8611331 8611421 -142172132 + L2 LINE L2 3176 3269 -3 282 260 110 0 chr11 8611607 8611707 -142171846 - L2 LINE L2 -1 3271 3161 577 296 64 27 chr11 8611774 8612071 -142171482 - L3 LINE CR1 -195 1382 1075 2573 185 82 25 chr11 8613059 8613168 -142170385 - MER119 DNA MER1_type 0 583 482 1938 132 35 3 chr11 8613168 8613456 -142170097 - AluSx SINE Alu -15 297 1 2573 185 82 25 chr11 8613456 8613898 -142169655 - MER119 DNA MER1_type -101 482 1 2199 75 85 0 chr11 8614243 8614525 -142169028 - AluSg SINE Alu -4 306 1 470 274 46 46 chr11 8614665 8614840 -142168713 + MIR SINE MIR 59 233 -29 2318 101 13 0 chr11 8614962 8615270 -142168283 - AluSx SINE Alu 0 312 1 2243 218 86 2 chr11 8615349 8615945 -142167608 - L1ME3A LINE L1 -2 6168 5523 1979 145 7 0 chr11 8616166 8616462 -142167091 - AluJb SINE Alu -14 298 1 33 0 0 0 chr11 8618044 8618077 -142165476 + AT_rich Low_complexity Low_complexity 1 33 0 2338 99 0 3 chr11 8618951 8619255 -142164298 - AluSc SINE Alu -6 303 1 29 28 0 0 chr11 8619649 8619685 -142163868 + AT_rich Low_complexity Low_complexity 1 36 0 734 169 0 31 chr11 8619706 8619836 -142163717 - AluJo SINE Alu -176 136 11 333 270 54 0 chr11 8621579 8621690 -142161863 - MIR3 SINE MIR -33 175 59 669 92 63 7 chr11 8622206 8622485 -142161068 + (CA)n Simple_repeat Simple_repeat 1 294 0 200 280 0 0 chr11 8622489 8622539 -142161014 + CT-rich Low_complexity Low_complexity 2 51 0 604 285 178 18 chr11 8625502 8625885 -142157668 - L3 LINE CR1 -516 1061 618 542 163 0 0 chr11 8625892 8625984 -142157569 + L1 LINE L1 3685 3776 -2370 6454 76 11 26 chr11 8626002 8626428 -142157125 + L1PA13 LINE L1 5254 5685 -478 2017 130 3 36 chr11 8626428 8626735 -142156818 + AluSx SINE Alu 2 298 -14 6454 76 11 26 chr11 8626735 8627218 -142156335 + L1PA13 LINE L1 5685 6149 -14 2431 90 0 0 chr11 8627224 8627534 -142156019 + AluY SINE Alu 1 310 -1 541 87 0 87 chr11 8627569 8627625 -142155928 + L1 LINE L1 3775 3822 -2324 2123 127 55 19 chr11 8627625 8627987 -142155566 - THE1C LTR MaLR 0 375 1 541 87 0 87 chr11 8627987 8628022 -142155531 + L1 LINE L1 3822 3858 -2288 217 371 150 0 chr11 8628057 8628224 -142155329 - L3 LINE CR1 -976 601 410 282 222 25 12 chr11 8628230 8628311 -142155242 + (TA)n Simple_repeat Simple_repeat 2 83 0 181 253 120 0 chr11 8628335 8628410 -142155143 - MIR SINE MIR -13 249 166 187 275 11 77 chr11 8628539 8628630 -142154923 - L2 LINE L2 -4 3268 3184 1283 151 66 37 chr11 8628958 8629230 -142154323 + L1MA9 LINE L1 6033 6312 0 1448 157 0 0 chr11 8629401 8629640 -142153913 + AluJb SINE Alu 68 306 0 1593 142 55 18 chr11 8629833 8630107 -142153446 - AluJo SINE Alu -16 296 13 44 0 0 0 chr11 8630247 8630291 -142153262 + AT_rich Low_complexity Low_complexity 1 44 0 2176 125 7 0 chr11 8630291 8630586 -142152967 - AluSx SINE Alu -15 297 1 362 294 7 34 chr11 8630630 8630776 -142152777 - MER112 DNA MER1_type -10 250 109 534 219 8 0 chr11 8630909 8631032 -142152521 + HAL1 LINE L1 1658 1781 -726 394 243 72 0 chr11 8631321 8631432 -142152121 - FRAM SINE Alu -1 165 47 387 0 0 0 chr11 8631656 8631699 -142151854 + (CA)n Simple_repeat Simple_repeat 2 44 0 207 250 13 66 chr11 8632288 8632364 -142151189 - MER5B DNA MER1_type -78 100 29 689 229 78 69 chr11 8632607 8632929 -142150624 - MLT1I LTR MaLR 0 409 73 3027 153 86 29 chr11 8632982 8633364 -142150189 - L1MB5 LINE L1 0 6174 5742 2199 103 31 0 chr11 8633364 8633654 -142149899 + AluSx SINE Alu 1 299 -13 3027 153 86 29 chr11 8633654 8633885 -142149668 - L1MB5 LINE L1 -432 5742 5526 773 89 0 0 chr11 8634526 8634627 -142148926 + HY3 scRNA scRNA 1 101 0 2409 50 0 7 chr11 8634640 8634960 -142148593 + AluY SINE Alu 1 318 0 231 216 103 69 chr11 8635199 8635315 -142148238 + L2 LINE L2 2119 2238 -1076 * 565 292 65 0 chr11 8635281 8635466 -142148087 - MIR SINE MIR -7 255 59 185 283 62 53 chr11 8635471 8635584 -142147969 + L2 LINE L2 2579 2692 -622 581 282 183 6 chr11 8635707 8636040 -142147513 + L2 LINE L2 2920 3311 -2 1707 177 0 18 chr11 8686442 8686719 -142096834 + AluJb SINE Alu 27 298 -14 253 303 91 40 chr11 8686867 8687042 -142096511 + MIR3 SINE MIR 21 204 -4 1904 153 3 3 chr11 8689471 8689766 -142093787 + AluJo SINE Alu 15 309 -3 2012 118 28 0 chr11 8689991 8690280 -142093273 - AluSx SINE Alu -15 297 1 565 199 252 0 chr11 8691014 8691165 -142092388 - MER5A DNA MER1_type 0 189 1 202 239 22 0 chr11 8692255 8692301 -142091252 - MIR SINE MIR -134 74 28 182 61 0 30 chr11 8692536 8692569 -142090984 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3004 169 59 45 chr11 8692655 8693352 -142090201 + L1MB4 LINE L1 5474 6180 0 1052 279 45 45 chr11 8693432 8693984 -142089569 - L1ME LINE L1 -303 5818 5267 273 290 130 23 chr11 8694367 8694498 -142089055 - MER5A DNA MER1_type -22 167 23 185 327 72 39 chr11 8694796 8694949 -142088604 + L2 LINE L2 2703 2860 -454 272 356 19 0 chr11 8696596 8696700 -142086853 + MIR3 SINE MIR 81 186 -22 622 262 92 35 chr11 8697431 8697660 -142085893 + L2 LINE L2 2015 2256 -1058 1276 288 101 37 chr11 8697660 8698433 -142085120 + L2 LINE L2 2419 3248 -65 713 146 0 85 chr11 8698433 8698563 -142084990 - AluJb SINE Alu -15 297 179 210 222 37 19 chr11 8698563 8698617 -142084936 + L2 LINE L2 3258 3312 -1 967 270 78 48 chr11 8699299 8699785 -142083768 - MLT1H LTR MaLR 0 549 5 439 281 66 37 chr11 8699921 8699994 -142083559 - MIR3 SINE MIR -28 234 165 2258 97 7 16 chr11 8699994 8700304 -142083249 - AluSq SINE Alu -6 307 1 439 281 66 37 chr11 8700304 8700447 -142083106 - MIR3 SINE MIR -97 165 19 205 217 33 17 chr11 8700655 8700715 -142082838 + L2 LINE L2 3178 3238 -75 180 359 119 25 chr11 8700891 8701050 -142082503 + L3b LINE CR1 1277 1450 -133 685 197 24 8 chr11 8701280 8701407 -142082146 + L2 LINE L2 3184 3312 -1 676 261 19 12 chr11 8702403 8702564 -142080989 + MIR SINE MIR 52 213 -49 469 265 94 18 chr11 8702901 8703071 -142080482 - MER63A DNA MER1_type -1 209 27 2049 103 3 3 chr11 8703324 8703606 -142079947 - AluSx SINE Alu -29 283 2 1930 119 7 7 chr11 8703753 8704046 -142079507 - AluSx SINE Alu -19 293 1 206 209 0 23 chr11 8704523 8704566 -142078987 - L2 LINE L2 -16 3297 3256 1544 182 3 24 chr11 8704746 8705043 -142078510 - AluJb SINE Alu -21 291 1 180 375 16 16 chr11 8705284 8705412 -142078141 - L2 LINE L2 -213 3059 2932 260 130 0 0 chr11 8705560 8705606 -142077947 - MLT1G1 LTR MaLR -18 577 532 614 99 0 141 chr11 8705668 8705789 -142077764 - AluJo SINE Alu -124 188 85 356 297 0 0 chr11 8705832 8705950 -142077603 - L1MC5 LINE L1 -533 7428 7311 * 571 250 99 16 chr11 8705934 8706126 -142077427 - L1MC4 LINE L1 -547 7495 7288 419 191 23 183 chr11 8706171 8706433 -142077120 - L1MC5 LINE L1 -32 7929 7710 741 164 8 15 chr11 8708054 8708188 -142075365 + FLAM_A SINE Alu 1 133 0 575 265 160 10 chr11 8708380 8708580 -142074973 + MIR SINE MIR 6 235 -27 1784 145 6 25 chr11 8708682 8709000 -142074553 - AluJo SINE Alu 0 312 1 2151 97 3 7 chr11 8710669 8710969 -142072584 - AluSx SINE Alu -8 304 6 1563 108 0 0 chr11 8711245 8711457 -142072096 + AluSg/x SINE Alu 89 300 -12 673 254 66 31 chr11 8712157 8712385 -142071168 + MIR SINE MIR 21 256 -6 525 307 0 13 chr11 8712436 8712589 -142070964 + MIR3 SINE MIR 16 166 -42 2118 103 0 0 chr11 8712609 8712899 -142070654 - AluSx SINE Alu -22 290 1 798 262 78 25 chr11 8713405 8713649 -142069904 + MIR SINE MIR 6 262 0 2043 123 7 0 chr11 8713690 8713983 -142069570 - AluSx SINE Alu -17 295 1 1586 166 51 10 chr11 8713984 8714280 -142069273 - AluJb SINE Alu -4 308 1 1954 143 7 3 chr11 8714297 8714605 -142068948 - AluSx SINE Alu -2 310 2 1647 164 11 28 chr11 8715742 8716029 -142067524 + AluJo SINE Alu 1 282 -30 450 0 0 0 chr11 8716032 8716082 -142067471 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1087 128 0 0 chr11 8716275 8716439 -142067114 + FAM SINE Alu 1 45 -4 2053 113 20 0 chr11 8716879 8717172 -142066381 + AluSq SINE Alu 1 299 -14 194 310 42 0 chr11 8717558 8717629 -142065924 + L2 LINE L2 2119 2192 -1122 926 314 75 26 chr11 8717708 8718161 -142065392 - L2 LINE L2 0 3313 2839 734 231 44 0 chr11 8718255 8718415 -142065138 + FRAM SINE Alu 5 171 -5 353 326 22 7 chr11 8718434 8718569 -142064984 + GA-rich Low_complexity Low_complexity 3 139 0 381 300 39 89 chr11 8719408 8719768 -142063785 - L2 LINE L2 -101 3171 2830 485 282 48 27 chr11 8720380 8720568 -142062985 - L2 LINE L2 -5 3308 3117 767 277 124 38 chr11 8720723 8721149 -142062404 - L2 LINE L2 -410 2904 2442 265 204 0 0 chr11 8721544 8721588 -142061965 + MIR SINE MIR 209 252 -10 765 183 0 0 chr11 8722110 8722246 -142061307 + FLAM_A SINE Alu 1 136 0 272 250 120 10 chr11 8722493 8722593 -142060960 - MIR3 SINE MIR -94 114 4 211 325 18 65 chr11 8722642 8722811 -142060742 + MIR SINE MIR 72 232 -30 303 324 76 44 chr11 8723011 8723169 -142060384 + MIR SINE MIR 2 163 -65 1730 147 0 18 chr11 8723170 8723449 -142060104 + AluJo SINE Alu 18 291 -21 381 102 0 0 chr11 8724351 8724410 -142059143 + (GA)n Simple_repeat Simple_repeat 1 59 0 320 299 99 30 chr11 8726282 8726483 -142057070 + MIR SINE MIR 4 218 -44 183 80 0 0 chr11 8728257 8728282 -142055271 + (A)n Simple_repeat Simple_repeat 1 25 0 306 0 0 0 chr11 8728551 8728585 -142054968 + (TG)n Simple_repeat Simple_repeat 2 35 0 857 223 84 44 chr11 8729991 8730242 -142053311 + MIR SINE MIR 2 262 0 412 164 0 125 chr11 8730422 8730526 -142053027 - AluJo SINE Alu -125 177 87 605 227 128 34 chr11 8731062 8731415 -142052138 - L1ME4a LINE L1 -3 6118 5733 1367 174 8 30 chr11 8731434 8731698 -142051855 + AluJo SINE Alu 45 302 -10 2334 73 0 3 chr11 8731838 8732140 -142051413 - AluY SINE Alu -10 301 1 500 251 126 13 chr11 8732673 8733078 -142050475 - L1ME4a LINE L1 -525 5641 5191 243 0 0 0 chr11 8733102 8733129 -142050424 + (TG)n Simple_repeat Simple_repeat 2 28 0 394 313 22 8 chr11 8733129 8733263 -142050290 - L1ME LINE L1 -537 5584 5449 318 345 35 9 chr11 8733287 8733403 -142050150 + L2 LINE L2 318 436 -2878 236 312 50 64 chr11 8733501 8733642 -142049911 + L2 LINE L2 628 766 -2548 304 330 82 79 chr11 8734002 8734608 -142048945 + L2 LINE L2 2694 3313 0 2138 102 6 10 chr11 8734930 8735244 -142048309 + AluSp SINE Alu 1 313 0 281 233 56 11 chr11 8738283 8738373 -142045180 + L2 LINE L2 3176 3269 -3 300 236 0 0 chr11 8738555 8738644 -142044909 + (TG)n Simple_repeat Simple_repeat 1 89 0 200 323 15 0 chr11 8738871 8738936 -142044617 - MIR SINE MIR 0 262 197 2046 123 0 16 chr11 8739560 8739877 -142043676 + AluSx SINE Alu 1 312 0 539 289 58 0 chr11 8740620 8740776 -142042777 - MIR SINE MIR -49 213 49 441 128 32 85 chr11 8740829 8740923 -142042630 - L1MC3 LINE L1 0 7785 7697 880 199 96 58 chr11 8742172 8742433 -142041120 - MER21B LTR ERV1 -51 812 542 186 253 67 53 chr11 8743311 8743386 -142040167 + L2 LINE L2 2864 2939 -374 231 185 192 39 chr11 8743786 8743916 -142039637 + L2 LINE L2 1325 1474 -1840 898 238 27 38 chr11 8743921 8744182 -142039371 + L2 LINE L2 2717 2974 -340 2288 76 3 0 chr11 8744394 8744685 -142038868 + AluSp SINE Alu 1 292 -21 3036 231 77 7 chr11 8744693 8745678 -142037875 + L1ME3A LINE L1 5120 6168 -2 2193 101 13 0 chr11 8745757 8746065 -142037488 + AluSx SINE Alu 1 312 0 536 274 46 46 chr11 8746187 8746362 -142037191 - MIR SINE MIR -29 233 59 2076 75 85 0 chr11 8746502 8746784 -142036769 + AluSg SINE Alu 1 306 -4 2213 189 79 38 chr11 8747129 8747579 -142035974 + MER119 DNA MER1_type 1 480 -103 1820 132 35 3 chr11 8747579 8747867 -142035686 + AluSx SINE Alu 1 297 -15 2213 189 79 38 chr11 8747867 8747976 -142035577 + MER119 DNA MER1_type 480 583 0 697 296 64 27 chr11 8748964 8749261 -142034292 + L3 LINE CR1 1075 1382 -195 293 267 118 0 chr11 8749274 8749428 -142034125 + L2 LINE L2 3139 3271 -1 208 286 0 0 chr11 8749586 8749642 -142033911 + L3 LINE CR1 1519 1574 -3 1658 184 27 7 chr11 8750067 8750366 -142033187 - AluJo SINE Alu -7 305 1 245 211 19 0 chr11 8750375 8750427 -142033126 - MARNA DNA Mariner -372 214 162 2116 108 0 71 chr11 8751060 8751383 -142032170 - AluSx SINE Alu -12 300 1 865 186 0 0 chr11 8751672 8751812 -142031741 + FLAM_C SINE Alu 1 140 -3 453 280 13 38 chr11 8752037 8752194 -142031359 - MIR SINE MIR -50 212 60 410 229 76 0 chr11 8752230 8752335 -142031218 + MIR SINE MIR 150 262 0 873 138 17 63 chr11 8752494 8752668 -142030885 - FRAM SINE Alu 0 176 11 213 154 0 0 chr11 8753210 8753249 -142030304 + (TG)n Simple_repeat Simple_repeat 2 40 0 256 207 73 24 chr11 8753333 8753353 -142030200 + MER21B LTR ERV1 5 23 -840 342 0 0 0 chr11 8753353 8753391 -142030162 + (GA)n Simple_repeat Simple_repeat 2 39 0 256 207 73 24 chr11 8753391 8753452 -142030101 + MER21B LTR ERV1 23 90 -773 1124 222 87 42 chr11 8753500 8753833 -142029720 - MSTD LTR MaLR -48 348 1 776 216 61 22 chr11 8753833 8753952 -142029601 + MER21B LTR ERV1 280 410 -453 288 0 0 0 chr11 8753952 8753984 -142029569 + (CA)n Simple_repeat Simple_repeat 2 33 0 776 216 61 22 chr11 8753984 8754043 -142029510 + MER21B LTR ERV1 410 465 -398 640 223 37 53 chr11 8754235 8754423 -142029130 + MIR SINE MIR 33 217 -45 332 174 184 0 chr11 8754583 8754681 -142028872 + L2 LINE L2 3139 3254 -18 208 331 65 8 chr11 8754807 8754931 -142028622 - MIR SINE MIR -88 174 44 187 158 0 53 chr11 8756105 8756143 -142027410 - L2 LINE L2 -37 3235 3200 204 40 0 0 chr11 8756202 8756227 -142027326 + (CAT)n Simple_repeat Simple_repeat 2 26 0 1042 126 0 0 chr11 8756264 8756407 -142027146 + AluJb SINE Alu 1 143 -169 4739 180 36 15 chr11 8757010 8757988 -142025565 - L1MB7 LINE L1 -9 6175 5219 306 0 0 0 chr11 8757988 8758022 -142025531 + (TG)n Simple_repeat Simple_repeat 1 34 0 4739 180 36 15 chr11 8758022 8758799 -142024754 - L1MB7 LINE L1 -965 5219 4325 2116 154 0 0 chr11 8758799 8759097 -142024456 - AluSx SINE Alu -14 298 1 4739 180 36 15 chr11 8759097 8759257 -142024296 - L1MB7 LINE L1 -1859 4325 4170 628 193 64 138 chr11 8759470 8759578 -142023975 + L2 LINE L2 3008 3122 -191 2350 102 3 0 chr11 8759578 8759881 -142023672 - AluSx SINE Alu -8 304 1 628 193 64 138 chr11 8759881 8760098 -142023455 + L2 LINE L2 3122 3309 -4 308 188 42 21 chr11 8760162 8760258 -142023295 - MER113 DNA MER1_type? -422 99 2 1613 97 9 8 chr11 8760307 8760555 -142022998 - pTR5 LTR ERV1 -2042 396 136 374 232 30 0 chr11 8760558 8760657 -142022896 - LTR30 LTR ERV1 -80 642 541 3264 76 0 18 chr11 8760658 8761116 -142022437 - pTR5 LTR ERV1 -417 2021 1572 506 249 93 72 chr11 8761844 8762081 -142021472 + MIR SINE MIR 11 252 -10 265 250 0 48 chr11 8763356 8763440 -142020113 + CT-rich Low_complexity Low_complexity 3 82 0 344 222 121 0 chr11 8764820 8764919 -142018634 + L2 LINE L2 3193 3303 -10 421 273 8 8 chr11 8765045 8765166 -142018387 - MIR3 SINE MIR -11 197 77 290 258 22 22 chr11 8765601 8765690 -142017863 - MIR3 SINE MIR -14 194 106 2128 243 78 5 chr11 8766002 8766554 -142016999 - MLT1G1 LTR MaLR 0 595 4 290 267 61 46 chr11 8766563 8766694 -142016859 - MLT1G1-int LTR MaLR -18 1353 1221 996 118 0 0 chr11 8766696 8766831 -142016722 + AluJb SINE Alu 1 135 -177 1669 176 20 14 chr11 8766831 8767126 -142016427 + AluJb SINE Alu 1 297 -15 321 250 14 93 chr11 8767197 8767337 -142016216 - MLT1G1-int LTR MaLR -188 1183 1055 2528 76 0 0 chr11 8767617 8767918 -142015635 + AluSp SINE Alu 1 301 -12 1801 161 36 20 chr11 8768002 8768307 -142015246 + AluJb SINE Alu 1 310 -2 2310 116 0 0 chr11 8768489 8768782 -142014771 - AluSx SINE Alu -19 293 1 284 190 170 0 chr11 8768827 8768903 -142014650 - L1MA10 LINE L1 0 6334 6236 207 69 0 0 chr11 8768903 8768932 -142014621 + (CA)n Simple_repeat Simple_repeat 1 29 0 284 190 170 0 chr11 8768932 8768955 -142014598 - L1MA10 LINE L1 -98 6236 6218 2401 89 7 0 chr11 8768964 8769266 -142014287 - AluSp SINE Alu -9 304 1 457 349 80 0 chr11 8769380 8769618 -142013935 - MLT1G1-int LTR MaLR -830 541 285 1239 230 107 44 chr11 8769678 8769849 -142013704 - MLT1G3 LTR MaLR 0 555 396 1896 145 3 29 chr11 8769849 8770159 -142013394 + AluJo SINE Alu 1 302 -10 1239 230 107 44 chr11 8770159 8770503 -142013050 - MLT1G3 LTR MaLR -159 396 1 2024 162 3 13 chr11 8771830 8772145 -142011408 - AluJb SINE Alu 0 312 1 249 274 95 0 chr11 8772741 8772825 -142010728 - MIR SINE MIR -131 131 40 218 266 121 57 chr11 8773016 8773140 -142010413 - L2 LINE L2 0 3272 3141 515 209 178 31 chr11 8773678 8773869 -142009684 - L2 LINE L2 -1121 2193 1975 422 279 21 14 chr11 8773936 8774076 -142009477 + L2 LINE L2 1524 1664 -1650 1553 175 46 4 chr11 8774089 8774352 -142009201 + AluJo SINE Alu 6 279 -33 348 194 0 37 chr11 8774361 8774469 -142009084 + GA-rich Low_complexity Low_complexity 1 104 0 732 226 57 5 chr11 8774472 8774684 -142008869 + L2 LINE L2 1699 1921 -1393 820 120 0 0 chr11 8774789 8774897 -142008656 - FLAM_C SINE Alu -30 113 6 481 316 61 67 chr11 8777585 8777898 -142005655 - L2 LINE L2 -1 3271 2961 28 29 0 0 chr11 8778144 8778179 -142005374 + AT_rich Low_complexity Low_complexity 1 35 0 1805 164 11 3 chr11 8778184 8778471 -142005082 + AluJo SINE Alu 3 291 -21 423 38 0 0 chr11 8778473 8778526 -142005027 + (TG)n Simple_repeat Simple_repeat 2 54 0 505 338 57 11 chr11 8778837 8779118 -142004435 - L2 LINE L2 -1057 2257 1964 237 256 85 37 chr11 8779853 8780018 -142003535 + MIR SINE MIR 11 230 -32 202 259 37 25 chr11 8780715 8780796 -142002757 + MIR3 SINE MIR 79 160 -48 2196 82 64 3 chr11 8780827 8781109 -142002444 + AluSq SINE Alu 1 299 -14 979 163 144 9 chr11 8781144 8781359 -142002194 - MLT1A1 LTR MaLR -117 248 5 * 1969 237 33 10 chr11 8781349 8781830 -142001723 - LTR40a LTR ERVL -27 492 1 2386 67 0 3 chr11 8782175 8782459 -142001094 - AluY SINE Alu -16 295 13 203 149 0 21 chr11 8786189 8786236 -141997317 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 248 104 42 0 chr11 8786342 8786390 -141997163 + CT-rich Low_complexity Low_complexity 3 52 0 745 207 75 6 chr11 8786397 8786571 -141996982 + MER20 DNA MER1_type 32 217 -2 221 297 77 0 chr11 8787939 8788030 -141995523 - L2 LINE L2 -6 3307 3210 361 23 0 0 chr11 8788874 8788917 -141994636 + 5S rRNA rRNA 1 43 -78 2241 106 17 0 chr11 8789551 8789843 -141993710 + AluSx SINE Alu 1 297 -15 2407 72 0 7 chr11 8792924 8793216 -141990337 + AluSg SINE Alu 1 290 -20 855 157 42 6 chr11 8794299 8794465 -141989088 - L1MB8 LINE L1 -23 6155 5984 462 281 137 67 chr11 8794474 8794712 -141988841 + L2 LINE L2 2853 3073 -240 2412 79 3 3 chr11 8794712 8795017 -141988536 - AluSp SINE Alu -8 305 1 462 281 137 67 chr11 8795017 8795209 -141988344 + L2 LINE L2 3073 3313 0 369 0 0 0 chr11 8795806 8795847 -141987706 + (TG)n Simple_repeat Simple_repeat 1 41 0 324 263 105 0 chr11 8796817 8796912 -141986641 - MIR SINE MIR -77 185 81 2427 84 3 3 chr11 8797632 8797931 -141985622 - AluSp SINE Alu -14 299 1 399 267 69 0 chr11 8798071 8798187 -141985366 + MIR SINE MIR 59 182 -80 475 262 152 92 chr11 8799757 8800320 -141983233 - L2 LINE L2 -1 3312 2702 325 263 281 55 chr11 8800443 8800758 -141982795 - L2 LINE L2 -1496 1818 1576 2144 102 3 24 chr11 8800758 8801053 -141982500 + AluSx SINE Alu 1 289 -23 325 263 281 55 chr11 8801053 8801213 -141982340 - L2 LINE L2 -1738 1576 1235 214 296 171 5 chr11 8803816 8804015 -141979538 - L2 LINE L2 -2365 949 718 3525 115 22 28 chr11 8804096 8804677 -141978876 - LTR9B LTR ERV1 0 644 67 609 114 48 6 chr11 8804677 8804915 -141978638 + AluSc SINE Alu 6 286 -23 695 223 59 3 chr11 8807096 8807108 -141976445 + MIR SINE MIR 52 62 -200 1814 131 22 47 chr11 8807108 8807428 -141976125 - AluJo SINE Alu 0 312 1 695 223 59 3 chr11 8807428 8807612 -141975941 + MIR SINE MIR 62 262 0 2138 82 67 0 chr11 8808209 8808479 -141975074 + AluSq SINE Alu 1 288 -25 2006 136 8 58 chr11 8809999 8810179 -141973374 + MER2 DNA MER2_type 2 158 -186 1721 177 7 7 chr11 8810179 8810495 -141973058 - AluJo SINE Alu 0 316 1 2006 136 8 58 chr11 8810495 8810674 -141972879 + MER2 DNA MER2_type 158 344 0 280 304 59 20 chr11 8810900 8811002 -141972551 - MIR SINE MIR -68 140 35 2184 78 14 17 chr11 8812964 8813259 -141970294 + AluSg SINE Alu 1 294 -16 727 115 107 66 chr11 8813399 8813521 -141970032 - FLAM_C SINE Alu -6 127 1 1502 198 146 33 chr11 8813853 8814447 -141969106 - MER20B DNA MER1_type 0 783 53 935 153 0 7 chr11 8814448 8814592 -141968961 + FLAM_C SINE Alu 1 143 0 1718 153 62 42 chr11 8814949 8815365 -141968188 - MSTB1 LTR MaLR -2 430 1 381 262 99 0 chr11 8816501 8816642 -141966911 + Charlie2a DNA MER1_type 1509 1663 -1199 2400 62 28 0 chr11 8817351 8817640 -141965913 + AluY SINE Alu 1 297 -14 189 234 125 0 chr11 8817659 8817723 -141965830 - MIR SINE MIR -74 188 117 1436 103 41 0 chr11 8817880 8818075 -141965478 - AluSp SINE Alu -32 281 79 189 216 39 39 chr11 8818643 8818694 -141964859 - MER5A DNA MER1_type -42 147 97 2142 94 28 0 chr11 8818741 8819029 -141964524 + AluSq SINE Alu 1 296 -17 1913 108 20 17 chr11 8821289 8821586 -141961967 + AluSx SINE Alu 1 298 -14 25 0 0 0 chr11 8822350 8822375 -141961178 + GC_rich Low_complexity Low_complexity 1 25 0 860 154 0 7 chr11 8823264 8823407 -141960146 + FLAM_C SINE Alu 1 142 -1 2665 40 0 0 chr11 8823893 8824191 -141959362 + AluY SINE Alu 1 298 -13 393 336 181 32 chr11 8824203 8825268 -141958285 + L2 LINE L2 1746 2969 -345 377 325 6 44 chr11 8825335 8825499 -141958054 - MIR SINE MIR -62 146 6 552 268 48 59 chr11 8826889 8827347 -141956206 - L1ME4a LINE L1 -196 5925 5472 767 183 15 0 chr11 8827697 8827828 -141955725 - FLAM_C SINE Alu 0 133 1 254 363 44 0 chr11 8827828 8827919 -141955634 + MIR SINE MIR 59 153 -109 327 237 128 51 chr11 8827926 8828082 -141955471 - L2 LINE L2 0 3313 3146 24 77 0 0 chr11 8828345 8828397 -141955156 + AT_rich Low_complexity Low_complexity 1 52 0 232 211 77 0 chr11 8828455 8828507 -141955046 + Charlie8 DNA MER1_type 1358 1413 -1004 5196 165 87 87 chr11 8828841 8829304 -141954249 + Charlie1a DNA MER1_type 1 462 -2299 2112 83 34 0 chr11 8829304 8829606 -141953947 + AluSc SINE Alu 9 319 0 5196 165 87 87 chr11 8829606 8829644 -141953909 + Charlie1a DNA MER1_type 462 498 -2263 2191 126 3 0 chr11 8829644 8829938 -141953615 + AluSp SINE Alu 1 295 -18 5196 165 87 87 chr11 8829938 8830640 -141952913 + Charlie1a DNA MER1_type 498 1210 -1551 1698 169 17 33 chr11 8830640 8830960 -141952593 + AluJo SINE Alu 1 312 0 5196 165 87 87 chr11 8830960 8831207 -141952346 + Charlie1a DNA MER1_type 1210 1455 0 2346 55 45 7 chr11 8832098 8832388 -141951165 + AluY SINE Alu 1 301 -10 2069 122 6 39 chr11 8832395 8832706 -141950847 + AluJb SINE Alu 1 301 -11 283 245 75 47 chr11 8832712 8832818 -141950735 + MIR SINE MIR 28 136 -126 195 311 170 19 chr11 8834011 8834117 -141949436 + L2 LINE L2 3146 3267 -5 268 100 25 0 chr11 8834275 8834315 -141949238 - Alu SINE Alu -259 41 1 21 36 0 0 chr11 8834710 8834738 -141948815 + AT_rich Low_complexity Low_complexity 1 28 0 1680 114 0 87 chr11 8834863 8835008 -141948545 + L1PA15 LINE L1 5892 5999 -166 2245 104 7 10 chr11 8835008 8835316 -141948237 + AluSx SINE Alu 4 310 -2 1680 114 0 87 chr11 8835316 8835469 -141948084 + L1PA15 LINE L1 5999 6164 -1 2223 111 3 0 chr11 8835668 8835956 -141947597 - AluSx SINE Alu -23 289 1 584 256 74 80 chr11 8836236 8836432 -141947121 + MLT1G1 LTR MaLR 10 247 -348 2457 74 3 3 chr11 8836432 8836742 -141946811 + AluSx SINE Alu 1 310 -2 584 256 74 80 chr11 8836742 8836850 -141946703 + MLT1G1 LTR MaLR 247 354 -241 4523 142 19 11 chr11 8837000 8837782 -141945771 + L1MB3 LINE L1 5254 6041 -142 1529 183 15 15 chr11 8837778 8838116 -141945437 - L1M4 LINE L1 -816 5330 4993 * 1861 110 14 52 chr11 8838199 8838490 -141945063 + AluSx SINE Alu 3 282 -30 677 258 17 77 chr11 8838559 8838792 -141944761 + MIR SINE MIR 19 237 -25 2451 95 0 6 chr11 8838948 8839263 -141944290 - AluSq SINE Alu 0 313 1 2439 59 28 0 chr11 8839355 8839642 -141943911 - AluY SINE Alu -16 295 1 376 308 115 0 chr11 8839726 8839856 -141943697 - L2 LINE L2 -17 3255 3111 243 286 66 33 chr11 8840528 8840619 -141942934 + L2 LINE L2 3177 3270 -2 185 229 0 0 chr11 8840701 8840736 -141942817 - MIR SINE MIR -12 250 216 1324 102 67 9 chr11 8840952 8841177 -141942376 + Tigger7 DNA MER2_type 2254 2491 0 311 364 71 7 chr11 8842710 8842864 -141940689 - MIR3 SINE MIR -23 185 22 268 358 96 3 chr11 8843441 8843705 -141939848 + L2 LINE L2 2738 3031 -241 885 138 66 42 chr11 8843836 8844003 -141939550 - MER58A DNA MER1_type -11 213 43 213 330 133 26 chr11 8844122 8844355 -141939198 - L2 LINE L2 -342 2972 2715 1456 137 32 40 chr11 8844363 8844612 -141938941 + AluJo SINE Alu 66 312 0 618 299 43 9 chr11 9044845 9045056 -141738497 + MIR SINE MIR 1 218 -44 321 87 0 0 chr11 9045198 9045244 -141738309 - AluJo SINE Alu -10 292 247 1564 151 0 20 chr11 9045310 9045555 -141737998 - AluJo SINE Alu -72 240 1 342 266 65 43 chr11 9045557 9045696 -141737857 - HAL1 LINE L1 -2135 372 231 30 27 0 0 chr11 9045805 9045842 -141737711 + AT_rich Low_complexity Low_complexity 1 37 0 223 242 48 16 chr11 9046224 9046286 -141737267 - MIR SINE MIR -116 146 83 311 332 54 36 chr11 9046406 9046629 -141736924 - LTR67 LTR ERVL -295 262 36 1699 218 14 6 chr11 9046923 9047286 -141736267 - MLT2D LTR ERVL -48 366 1 560 273 246 25 chr11 9047870 9048497 -141735056 - L2 LINE L2 -248 3065 2305 2274 164 3 8 chr11 9048750 9049115 -141734438 + MLT1A1 LTR MaLR 3 365 0 1421 283 72 4 chr11 9050440 9050899 -141732654 + L2 LINE L2 2824 3313 0 22 0 0 0 chr11 9051165 9051187 -141732366 + AT_rich Low_complexity Low_complexity 1 22 0 226 305 0 0 chr11 9052343 9052402 -141731151 - MIR SINE MIR -63 145 87 253 311 57 62 chr11 9052489 9052682 -141730871 - L2 LINE L2 -210 3062 2871 2593 59 0 0 chr11 9053196 9053499 -141730054 - AluY SINE Alu -8 303 1 2241 168 12 22 chr11 9053772 9054172 -141729381 + MSTD LTR MaLR 1 396 0 186 219 0 0 chr11 9054516 9054548 -141729005 + L2 LINE L2 3024 3055 -258 406 302 191 41 chr11 9054844 9055361 -141728192 - L2 LINE L2 -342 2972 2378 182 286 66 33 chr11 9056762 9056853 -141726700 - MIR3 SINE MIR -31 177 84 2148 109 7 0 chr11 9056868 9057180 -141726373 - AluSx SINE Alu 0 314 1 249 316 84 32 chr11 9057700 9057890 -141725663 + MIR SINE MIR 2 201 -61 3500 176 66 18 chr11 9057902 9058614 -141724939 - LTR39 LTR ERV1 0 783 38 869 215 25 0 chr11 9058617 9058780 -141724773 - MIR SINE MIR -23 239 73 1446 213 82 26 chr11 9059750 9060203 -141723350 - L1ME LINE L1 -480 5686 5185 2031 146 0 3 chr11 9060203 9060504 -141723049 - AluJb SINE Alu -12 300 1 1446 213 82 26 chr11 9060504 9060728 -141722825 - L1ME LINE L1 -981 5185 4975 279 262 37 19 chr11 9060833 9060940 -141722613 - HAL1b LINE L1 -49 1299 1191 672 83 4 78 chr11 9061044 9061311 -141722242 + AluSc SINE Alu 1 309 0 21 0 0 0 chr11 9061376 9061397 -141722156 + AT_rich Low_complexity Low_complexity 1 21 0 294 287 86 17 chr11 9062178 9062352 -141721201 - L1ME LINE L1 -1227 4919 4734 480 310 139 24 chr11 9062442 9062729 -141720824 - L1ME LINE L1 -1515 4631 4312 345 293 40 30 chr11 9062787 9062985 -141720568 - L1ME LINE L1 -1924 4222 4023 376 338 88 7 chr11 9063008 9063156 -141720397 - L1ME LINE L1 -2275 3871 3712 455 33 16 0 chr11 9063753 9063814 -141719739 + (CA)n Simple_repeat Simple_repeat 2 63 0 312 275 83 25 chr11 9063991 9064111 -141719442 - L1MC4 LINE L1 -1335 6707 6581 265 191 33 40 chr11 9064120 9064272 -141719281 + (CATATA)n Simple_repeat Simple_repeat 2 152 0 358 202 0 101 chr11 9064275 9064374 -141719179 - L1MC4 LINE L1 -1340 6702 6614 353 204 0 112 chr11 9064286 9064384 -141719169 + L1MC4 LINE L1 6617 6703 -1339 * 250 233 17 0 chr11 9064416 9064476 -141719077 + L1M4 LINE L1 2957 3017 -3129 591 222 83 44 chr11 9064481 9064804 -141718749 - MLT1I LTR MaLR -2 407 82 28 0 0 0 chr11 9064952 9064980 -141718573 + AT_rich Low_complexity Low_complexity 1 28 0 3545 96 14 0 chr11 9065048 9065558 -141717995 - Tigger4(Zombi) DNA MER2_type -3 2728 2212 461 195 0 0 chr11 9065563 9065645 -141717908 - Tigger4(Zombi) DNA MER2_type -2649 82 1 26 0 0 0 chr11 9065711 9065737 -141717816 + AT_rich Low_complexity Low_complexity 1 26 0 1671 99 4 0 chr11 9066022 9066255 -141717298 + L1PA11 LINE L1 5939 6172 -2 232 222 0 28 chr11 9066344 9066416 -141717137 + (TA)n Simple_repeat Simple_repeat 2 71 0 43 20 0 0 chr11 9066460 9066510 -141717043 + AT_rich Low_complexity Low_complexity 1 50 0 415 89 18 0 chr11 9066627 9066683 -141716870 - Alu SINE Alu -260 58 2 811 334 72 28 chr11 9066687 9066869 -141716684 - L2 LINE L2 -2783 531 358 2430 95 3 0 chr11 9066869 9067175 -141716378 + AluSc SINE Alu 1 307 -2 811 334 72 28 chr11 9067175 9067453 -141716100 - L2 LINE L2 -2956 358 51 2256 123 0 0 chr11 9067686 9067986 -141715567 + AluSx SINE Alu 1 300 -12 387 273 21 103 chr11 9068746 9068940 -141714613 - MIR3 SINE MIR -30 178 1 2381 86 0 17 chr11 9069191 9069493 -141714060 - AluSc SINE Alu -12 297 1 577 178 68 0 chr11 9070110 9070256 -141713297 + L1MB8 LINE L1 6017 6172 -6 729 323 92 24 chr11 9070256 9071166 -141712387 + L1MC4a LINE L1 4904 5233 -913 903 176 0 48 chr11 9071319 9071484 -141712069 + FRAM SINE Alu 1 156 -20 502 286 121 57 chr11 9071586 9072024 -141711529 + L2 LINE L2 2567 3029 -243 182 37 37 0 chr11 9073156 9073183 -141710370 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 290 252 99 46 chr11 9073511 9073662 -141709891 + MLT1J2 LTR MaLR 1 159 -291 2137 142 0 3 chr11 9075411 9075720 -141707833 + AluSx SINE Alu 1 308 -4 229 241 102 77 chr11 9075920 9076194 -141707359 + L2 LINE L2 2472 2752 -562 * 630 283 23 39 chr11 9076184 9076446 -141707107 - MIR SINE MIR 0 262 6 1446 260 94 15 chr11 9076481 9076989 -141706564 + L2 LINE L2 2780 3312 -1 238 328 39 8 chr11 9076995 9077123 -141706430 + L2 LINE L2 2919 3050 -222 388 325 33 8 chr11 9077559 9077679 -141705874 - MER91C DNA MER1_type 0 140 18 548 291 35 35 chr11 9078290 9078489 -141705064 - MIR SINE MIR -56 206 8 235 140 0 0 chr11 9080085 9080135 -141703418 - LTR66 LTR ERVL -167 443 394 220 213 21 0 chr11 9080210 9080257 -141703296 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 224 264 11 0 chr11 9080360 9080447 -141703106 + (TGGA)n Simple_repeat Simple_repeat 4 91 0 210 329 13 0 chr11 9080458 9080537 -141703016 + (TGGA)n Simple_repeat Simple_repeat 3 82 0 180 111 0 0 chr11 9080561 9080588 -141702965 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 228 67 0 0 chr11 9081886 9081916 -141701637 + (CCCCAG)n Simple_repeat Simple_repeat 4 33 0 266 210 0 16 chr11 9081946 9082008 -141701545 + G-rich Low_complexity Low_complexity 3 63 0 441 54 0 0 chr11 9082793 9082849 -141700704 + (TG)n Simple_repeat Simple_repeat 2 57 0 541 311 99 77 chr11 9082858 9083312 -141700241 + L2 LINE L2 2805 3268 -4 937 227 77 57 chr11 9083349 9083596 -141699957 + MIR SINE MIR 1 252 -10 213 256 122 24 chr11 9083603 9083685 -141699868 - L2 LINE L2 -41 3231 3142 421 274 103 0 chr11 9083776 9083893 -141699660 + MIR SINE MIR 28 156 -106 229 237 158 0 chr11 9084360 9084436 -141699117 + MIR SINE MIR 8 95 -167 884 270 103 71 chr11 9084619 9084796 -141698757 + L2 LINE L2 2505 2675 -638 2297 113 7 0 chr11 9084796 9085106 -141698447 - AluSx SINE Alu 0 312 1 884 270 103 71 chr11 9085106 9085415 -141698138 + L2 LINE L2 2675 3016 -297 480 252 42 8 chr11 9085680 9085799 -141697754 + L2 LINE L2 3180 3302 -11 389 274 44 15 chr11 9086179 9086314 -141697239 + MIR3 SINE MIR 32 170 -38 284 315 18 45 chr11 9086299 9086410 -141697143 - MIR SINE MIR -84 178 71 * 258 227 61 0 chr11 9086422 9086488 -141697065 + L2 LINE L2 3158 3227 -86 207 362 103 0 chr11 9086573 9086689 -141696864 + L2 LINE L2 3139 3266 -6 808 279 150 19 chr11 9086810 9087346 -141696207 - L2 LINE L2 0 3313 2685 439 229 31 0 chr11 9089255 9089372 -141694181 - MIR SINE MIR -54 154 46 2252 117 0 0 chr11 9089968 9090267 -141693286 + AluSx SINE Alu 1 299 -13 210 344 16 24 chr11 9090627 9090752 -141692801 - L2 LINE L2 -943 2371 2248 240 310 121 14 chr11 9091508 9091667 -141691886 - MIR SINE MIR -3 205 19 246 81 0 0 chr11 9091917 9091954 -141691599 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 205 197 30 15 chr11 9094894 9094960 -141688593 + GA-rich Low_complexity Low_complexity 6 72 0 452 323 44 34 chr11 9095151 9095371 -141688182 + L1MEd LINE L1 845 1072 -5047 360 64 0 0 chr11 9095371 9095418 -141688135 + (CA)n Simple_repeat Simple_repeat 2 48 0 452 323 44 34 chr11 9095418 9095581 -141687972 + L1MEd LINE L1 1072 1232 -4887 322 274 38 0 chr11 9095941 9096047 -141687506 + L1MEd LINE L1 2457 2566 -3563 2307 101 3 0 chr11 9096139 9096436 -141687117 + AluSp SINE Alu 2 299 -14 1054 147 0 0 chr11 9096436 9096613 -141686940 + AluSg/x SINE Alu 134 310 0 237 193 21 186 chr11 9096827 9096870 -141686683 - L1ME3A LINE L1 -88 6082 6034 2314 84 0 32 chr11 9096870 9097180 -141686373 + AluY SINE Alu 1 300 -11 237 193 21 186 chr11 9097180 9097281 -141686272 - L1ME3A LINE L1 -136 6034 5962 1426 131 9 9 chr11 9097284 9097505 -141686048 + MER1B DNA MER1_type 1 221 -76 225 241 0 25 chr11 9097582 9097661 -141685892 - L1ME3A LINE L1 -208 5962 5886 321 311 14 54 chr11 9098004 9098152 -141685401 - MLT1K LTR MaLR -302 286 145 315 343 21 7 chr11 9099307 9099450 -141684103 - MIR SINE MIR -44 218 74 389 238 48 0 chr11 9101367 9101472 -141682081 - MIR SINE MIR -97 165 56 546 281 0 0 chr11 9101543 9101689 -141681864 - L1ME3 LINE L1 -48 6114 5969 251 279 38 0 chr11 9101817 9101896 -141681657 + MER94 DNA DNA 27 108 -26 352 228 185 0 chr11 9103498 9103590 -141679963 + MER91A DNA MER1_type 2 110 -86 603 27 0 0 chr11 9103703 9103776 -141679777 + (TG)n Simple_repeat Simple_repeat 2 74 0 3971 198 33 21 chr11 9106063 9106921 -141676632 - Tigger6a DNA MER2_type -214 869 2 800 189 51 0 chr11 9106927 9107102 -141676451 - L1ME3 LINE L1 -332 5830 5647 195 167 167 69 chr11 9107294 9107366 -141676187 - MIR SINE MIR -55 153 75 234 128 0 0 chr11 9108131 9108170 -141675383 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 285 322 91 77 chr11 9108179 9108465 -141675088 - L2 LINE L2 -1 3271 2982 189 269 0 103 chr11 9109742 9109820 -141673733 - L2 LINE L2 -247 3025 2956 712 247 30 12 chr11 9109844 9110010 -141673543 - MIR SINE MIR -42 220 52 213 263 9 53 chr11 9110010 9110124 -141673429 + (CA)n Simple_repeat Simple_repeat 2 110 0 372 277 126 69 chr11 9111271 9111502 -141672051 + L1ME4a LINE L1 5838 6081 -40 333 0 0 0 chr11 9111507 9111544 -141672009 + (TG)n Simple_repeat Simple_repeat 2 38 0 1816 167 3 7 chr11 9112414 9112708 -141670845 - AluJo SINE Alu -19 293 1 270 297 169 49 chr11 9112808 9113311 -141670242 + L3 LINE CR1 768 1344 -233 1313 212 73 42 chr11 9113311 9113763 -141669790 + MLT1C LTR MaLR 2 467 0 270 297 169 49 chr11 9113763 9113808 -141669745 + L3 LINE CR1 1344 1382 -195 830 148 15 11 chr11 9113815 9114085 -141669468 + CT-rich Low_complexity Low_complexity 1 271 0 1917 113 65 3 chr11 9114087 9114379 -141669174 - AluJo SINE Alu -2 310 1 1171 220 49 20 chr11 9115264 9115568 -141667985 - MLT1H LTR MaLR -186 363 51 1047 239 5 93 chr11 9116549 9116959 -141666594 - MLT1A2 LTR MaLR 0 374 1 1484 137 26 72 chr11 9117850 9118157 -141665396 + THE1C LTR MaLR 83 375 0 2258 110 3 3 chr11 9118751 9119051 -141664502 - AluSc SINE Alu -9 300 1 6226 189 20 13 chr11 9119533 9120239 -141663314 + L1P5 LINE L1 3837 4537 -1617 2392 114 2 53 chr11 9120239 9120463 -141663090 - THE1C LTR MaLR 0 375 177 2232 82 4 0 chr11 9120463 9120755 -141662798 + AluSp SINE Alu 17 309 0 2392 114 2 53 chr11 9120755 9120924 -141662629 - THE1C LTR MaLR -198 177 1 6226 189 20 13 chr11 9120924 9121829 -141661724 + L1P5 LINE L1 4537 5461 -693 4254 101 0 9 chr11 9121829 9122472 -141661081 - L1PA13 LINE L1 -4 6159 5523 6226 189 20 13 chr11 9122472 9122488 -141661065 + L1P5 LINE L1 5461 5475 -679 1956 127 0 0 chr11 9122488 9122747 -141660806 + AluSq SINE Alu 1 259 -54 295 219 47 0 chr11 9123033 9123097 -141660456 + MIR3 SINE MIR 112 178 -30 261 241 23 69 chr11 9123151 9123213 -141660340 + MIR3 SINE MIR 111 169 -39 2112 124 34 8 chr11 9123213 9123568 -141659985 + THE1B LTR MaLR 1 364 0 261 241 23 69 chr11 9123568 9123592 -141659961 + MIR3 SINE MIR 169 193 -15 219 167 0 0 chr11 9123642 9123684 -141659869 + (CA)n Simple_repeat Simple_repeat 2 43 0 455 313 33 0 chr11 9125050 9125200 -141658353 + MIR SINE MIR 21 175 -87 494 252 20 54 chr11 9126904 9127051 -141656502 + MER91A DNA MER1_type 14 155 -41 1023 250 68 78 chr11 9127151 9127699 -141655854 - MLT1H LTR MaLR 0 549 8 297 185 0 0 chr11 9129688 9129742 -141653811 + L2 LINE L2 3258 3311 -2 218 321 108 20 chr11 9129977 9130148 -141653405 + MIR SINE MIR 30 212 -50 23 0 0 0 chr11 9130813 9130836 -141652717 + AT_rich Low_complexity Low_complexity 1 23 0 542 243 76 43 chr11 9131709 9131842 -141651711 + MIR SINE MIR 60 202 -60 383 205 0 0 chr11 9131842 9131920 -141651633 + MER116 DNA Mariner 1 78 -2 542 243 76 43 chr11 9131920 9131971 -141651582 + MIR SINE MIR 202 250 -12 2823 20 0 0 chr11 9132307 9132612 -141650941 - AluY SINE Alu -6 305 1 28 29 0 0 chr11 9132708 9132743 -141650810 + AT_rich Low_complexity Low_complexity 1 35 0 361 268 112 7 chr11 9132743 9132890 -141650663 + L1MCa LINE L1 1918 6973 -1349 259 266 13 0 chr11 9133625 9133704 -141649849 - MIR3 SINE MIR -52 156 77 211 224 0 35 chr11 9136605 9136663 -141646890 + CT-rich Low_complexity Low_complexity 4 59 0 1810 155 11 14 chr11 9136782 9137066 -141646487 + AluJo SINE Alu 14 296 -16 767 228 17 22 chr11 9137381 9137561 -141645992 - MER5A DNA MER1_type -7 182 4 607 211 8 0 chr11 9139411 9139534 -141644019 + L1MA8 LINE L1 6166 6289 -2 254 260 208 19 chr11 9139595 9139749 -141643804 - L3 LINE CR1 -102 1475 1293 508 320 137 17 chr11 9139762 9139862 -141643691 - MIR SINE MIR 0 262 175 1912 106 0 72 chr11 9139862 9140183 -141643370 - AluY SINE Alu -13 298 1 508 320 137 17 chr11 9140183 9140316 -141643237 - MIR SINE MIR -87 175 1 309 341 48 3 chr11 9140330 9140538 -141643015 - L3 LINE CR1 -344 1233 964 249 303 56 0 chr11 9140885 9140974 -141642579 - MIR3 SINE MIR -33 175 82 230 267 43 60 chr11 9141339 9141455 -141642098 + MIR SINE MIR 27 140 -68 207 0 0 0 chr11 9141458 9141477 -141642076 + (GA)n Simple_repeat Simple_repeat 1 42 0 207 0 0 0 chr11 9141477 9141500 -141642053 + (GA)n Simple_repeat Simple_repeat 2 24 0 1736 155 0 14 chr11 9141587 9141864 -141641689 - AluJo SINE Alu -39 273 1 1559 117 0 30 chr11 9141980 9142211 -141641342 - L1PA8A LINE L1 0 6131 5908 281 317 8 8 chr11 9142679 9142802 -141640751 + GA-rich Low_complexity Low_complexity 5 127 0 422 292 153 19 chr11 9143602 9143818 -141639735 - MLT1L LTR MaLR 0 615 371 1340 177 56 16 chr11 9144757 9145006 -141638547 - AluJo SINE Alu -53 259 1 236 253 26 148 chr11 9145276 9145505 -141638048 + L2 LINE L2 2998 3198 -74 275 260 0 0 chr11 9145543 9145616 -141637937 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 219 376 178 12 chr11 9145617 9145875 -141637678 + L3 LINE CR1 358 658 -919 524 314 0 0 chr11 9149290 9149465 -141634088 + (CCTCG)n Simple_repeat Simple_repeat 5 179 0 326 236 97 56 chr11 9150017 9150160 -141633393 + MIR3 SINE MIR 21 171 -37 310 313 30 55 chr11 9150175 9150376 -141633177 + L2 LINE L2 3083 3278 -35 303 337 96 16 chr11 9150922 9151109 -141632444 + MIR SINE MIR 2 203 -59 567 319 23 61 chr11 9151319 9151582 -141631971 - MIR SINE MIR -8 254 2 345 257 7 44 chr11 9151644 9151780 -141631773 + CT-rich Low_complexity Low_complexity 4 134 0 231 36 0 0 chr11 9154400 9154428 -141629125 + (CAGCC)n Simple_repeat Simple_repeat 5 32 0 210 35 0 105 chr11 9154483 9154540 -141629013 + (CTGGGG)n Simple_repeat Simple_repeat 1 51 0 249 277 53 21 chr11 9154674 9154768 -141628785 - L2 LINE L2 -39 3233 3137 204 246 8 119 chr11 9155088 9155222 -141628331 + L2 LINE L2 3154 3272 0 215 231 0 19 chr11 9155996 9156048 -141627505 + (CAGG)n Simple_repeat Simple_repeat 3 53 0 2179 90 30 10 chr11 9156585 9156886 -141626667 + AluSg1 SINE Alu 1 307 -2 288 287 17 40 chr11 9157652 9157666 -141625887 + (CATATA)n Simple_repeat Simple_repeat 1 14 -156 2006 85 6 82 chr11 9157666 9157983 -141625570 + AluSx SINE Alu 1 293 -19 288 287 17 40 chr11 9157983 9158142 -141625411 + (CATATA)n Simple_repeat Simple_repeat 14 170 0 379 276 31 0 chr11 9158917 9159015 -141624538 + MIR SINE MIR 80 180 -82 579 199 60 12 chr11 9159046 9159212 -141624341 - MIR SINE MIR -5 257 84 1687 167 16 16 chr11 9159787 9159917 -141623636 + AluJo SINE Alu 1 130 -182 288 0 0 0 chr11 9159917 9159949 -141623604 + (CA)n Simple_repeat Simple_repeat 2 33 0 1687 167 16 16 chr11 9159949 9160130 -141623423 + AluJo SINE Alu 129 312 0 905 231 52 0 chr11 9160130 9160355 -141623198 - MIR SINE MIR -6 256 17 319 317 106 0 chr11 9161123 9161246 -141622307 - L2 LINE L2 -1 3271 3136 304 283 151 52 chr11 9161351 9161623 -141621930 - L2 LINE L2 -491 2823 2525 191 414 29 10 chr11 9161627 9161731 -141621822 - MIR SINE MIR 0 262 157 652 271 9 32 chr11 9161733 9161954 -141621599 - LTR33 LTR ERVL -2 519 304 1154 267 41 26 chr11 9163080 9163469 -141620084 - MLT1I LTR MaLR 0 409 15 2632 107 5 29 chr11 9163936 9164320 -141619233 - THE1C LTR MaLR 0 375 1 197 200 0 0 chr11 9164660 9164695 -141618858 + MIR SINE MIR 75 109 -153 557 278 116 6 chr11 9164842 9165015 -141618538 + MIR SINE MIR 70 261 -1 464 210 63 145 chr11 9165342 9165669 -141617884 + LTR16A1 LTR ERVL 169 457 0 438 368 69 26 chr11 9165724 9165955 -141617598 - MIR SINE MIR -14 248 8 22 35 0 0 chr11 9168495 9168524 -141615029 + AT_rich Low_complexity Low_complexity 1 29 0 387 0 0 0 chr11 9170189 9170232 -141613321 + (CA)n Simple_repeat Simple_repeat 1 43 0 423 207 162 0 chr11 9171024 9171135 -141612418 + MER3 DNA MER1_type 77 205 -4 829 290 68 16 chr11 9171323 9171571 -141611982 + MIR SINE MIR 2 262 0 231 36 0 0 chr11 9171575 9171603 -141611950 + (CACCAT)n Simple_repeat Simple_repeat 6 33 0 1592 242 301 11 chr11 9174369 9175116 -141608437 + L1MC4 LINE L1 6948 7911 -131 2499 184 98 45 chr11 9176171 9176764 -141606789 - MLT1E3 LTR MaLR 0 624 1 565 179 8 15 chr11 9178527 9178661 -141604892 + CT-rich Low_complexity Low_complexity 4 136 0 1107 220 43 28 chr11 9179012 9179339 -141604214 - L1ME3 LINE L1 0 6162 5831 521 222 28 49 chr11 9179339 9179483 -141604070 - Tigger6 DNA MER2_type -3 1594 1454 23 33 0 0 chr11 9179595 9179625 -141603928 + AT_rich Low_complexity Low_complexity 1 30 0 536 330 85 13 chr11 9180559 9180795 -141602758 + MIR SINE MIR 5 257 -5 460 310 111 10 chr11 9180845 9181321 -141602232 + L2 LINE L2 2380 3254 -18 634 333 98 46 chr11 9181330 9182199 -141601354 - L2 LINE L2 -374 2940 2027 2178 130 9 35 chr11 9183432 9183778 -141599775 + MER1B DNA MER1_type 1 337 0 216 257 17 149 chr11 9183809 9183984 -141599569 + L2 LINE L2 2726 2877 -437 195 69 0 0 chr11 9184090 9184119 -141599434 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 263 309 93 32 chr11 9184347 9184593 -141598960 - L2 LINE L2 -189 3083 2823 1061 261 76 80 chr11 9184764 9185353 -141598200 + MER45C DNA AcHobo 46 632 -321 606 257 24 23 chr11 9186003 9186178 -141597375 + MIR SINE MIR 41 214 -48 828 281 49 20 chr11 9186204 9186450 -141597103 - MIR SINE MIR -8 254 2 1807 157 30 10 chr11 9186508 9186813 -141596740 - AluJo SINE Alu -1 311 1 21 36 0 0 chr11 9186813 9186841 -141596712 + AT_rich Low_complexity Low_complexity 1 28 0 254 274 27 0 chr11 9187331 9187404 -141596149 - L3 LINE CR1 -88 1489 1415 388 250 107 0 chr11 9187731 9187843 -141595710 - MER63 DNA MER1_type -86 750 1 342 123 0 0 chr11 9187887 9187944 -141595609 + (TG)n Simple_repeat Simple_repeat 2 58 0 205 74 0 0 chr11 9188684 9188711 -141594842 + L2 LINE L2 3231 3257 -15 182 65 65 0 chr11 9191903 9191934 -141591619 + CT-rich Low_complexity Low_complexity 3 35 0 212 241 0 19 chr11 9192067 9192121 -141591432 + CT-rich Low_complexity Low_complexity 4 56 0 639 313 42 32 chr11 9192134 9192351 -141591202 + MIR SINE MIR 25 243 -19 901 264 17 13 chr11 9192647 9192878 -141590675 + MIR SINE MIR 31 262 0 230 297 0 0 chr11 9193753 9193827 -141589726 + MIR SINE MIR 68 141 -67 223 271 188 24 chr11 9195276 9195361 -141588192 - MIR SINE MIR -66 142 44 1145 172 66 66 chr11 9196999 9197318 -141586235 - MER33 DNA MER1_type 0 324 6 195 313 104 17 chr11 9197334 9197449 -141586104 - MIR SINE MIR -68 140 16 194 304 194 44 chr11 9197640 9197867 -141585686 - L2 LINE L2 -27 3245 2985 24 0 0 0 chr11 9199017 9199041 -141584512 + GC_rich Low_complexity Low_complexity 1 24 0 1144 306 50 21 chr11 9199073 9199554 -141583999 + L2 LINE L2 2817 3311 -2 238 321 37 55 chr11 9200062 9200171 -141583382 + MIR3 SINE MIR 90 196 -12 231 103 0 0 chr11 9200296 9200335 -141583218 + (ACTG)n Simple_repeat Simple_repeat 4 42 0 347 257 55 9 chr11 9201713 9201822 -141581731 + L2 LINE L2 3199 3312 -1 295 297 70 62 chr11 9201901 9202029 -141581524 - MIR SINE MIR -61 147 28 196 254 85 0 chr11 9202152 9202211 -141581342 - MIR SINE MIR -61 147 84 811 135 8 23 chr11 9202951 9203084 -141580469 - AluSq/x SINE Alu -182 131 1 230 271 99 44 chr11 9203101 9203269 -141580284 + MIR3 SINE MIR 54 230 -32 * 249 359 166 0 chr11 9203242 9203387 -141580166 - L3 LINE CR1 -27 1550 1382 1897 149 7 7 chr11 9204007 9204303 -141579250 - AluJb SINE Alu -16 296 1 219 339 150 0 chr11 9204772 9204899 -141578654 - MIR SINE MIR -98 164 19 407 266 139 17 chr11 9207023 9207196 -141576357 - MIR3 SINE MIR -3 205 12 196 396 0 11 chr11 9208448 9208539 -141575014 + MIR SINE MIR 46 135 -127 205 313 0 10 chr11 9208782 9208878 -141574675 + CT-rich Low_complexity Low_complexity 1 95 0 307 350 55 21 chr11 9210004 9210223 -141573330 + MIR SINE MIR 6 233 -29 1919 197 53 40 chr11 9210295 9210845 -141572708 - L1MD3 LINE L1 0 8042 7501 254 328 128 8 chr11 9210846 9210971 -141572582 + MIR SINE MIR 78 217 -45 1607 143 3 52 chr11 9211308 9211595 -141571958 - AluJb SINE Alu -14 298 26 210 368 0 0 chr11 9211595 9211671 -141571882 - MIR SINE MIR -185 77 2 370 194 74 74 chr11 9211830 9211938 -141571615 + L2 LINE L2 3201 3308 -5 389 308 258 0 chr11 9212929 9213111 -141570442 + MIR SINE MIR 7 235 -27 1904 209 45 54 chr11 9213143 9213508 -141570045 + L1ME3 LINE L1 5612 5972 -190 2497 60 0 0 chr11 9213508 9213810 -141569743 + AluY SINE Alu 5 306 -5 1904 209 45 54 chr11 9213810 9214000 -141569553 + L1ME3 LINE L1 5972 6162 0 706 307 46 8 chr11 9214046 9214284 -141569269 - MIR SINE MIR -1 261 15 194 139 0 28 chr11 9215017 9215053 -141568500 - L2 LINE L2 -21 3251 3217 2378 154 3 8 chr11 9215573 9215937 -141567616 - MLT1A1 LTR MaLR 0 365 4 547 294 213 41 chr11 9216194 9217022 -141566531 + L2 LINE L2 2311 3254 -59 360 354 23 8 chr11 9218664 9218794 -141564759 + L3 LINE CR1 941 1072 -505 488 376 44 0 chr11 9220113 9220294 -141563259 - MIR SINE MIR -4 258 70 542 314 42 11 chr11 9220396 9220587 -141562966 + MIR SINE MIR 16 212 -50 193 280 43 43 chr11 9220622 9220715 -141562838 - MIR SINE MIR -82 180 88 3321 151 23 11 chr11 9220852 9220878 -141562675 + L1MB7 LINE L1 5601 5625 -559 2747 122 39 0 chr11 9220878 9221288 -141562265 - MSTB LTR MaLR 0 426 1 3321 151 23 11 chr11 9221288 9221830 -141561723 + L1MB7 LINE L1 5625 6176 -8 318 252 36 54 chr11 9223162 9223273 -141560280 - MIR SINE MIR -138 124 16 279 391 8 16 chr11 9224486 9224614 -141558939 + L2 LINE L2 2632 2758 -556 275 27 0 0 chr11 9224615 9224652 -141558901 + L1PA16 LINE L1 5945 5981 -185 421 119 0 83 chr11 9224653 9224737 -141558816 + L1PA16 LINE L1 6057 6133 -33 307 349 72 46 chr11 9225022 9225217 -141558336 - L1 LINE L1 -1535 4611 4412 196 280 20 0 chr11 9225929 9225979 -141557574 + MIR SINE MIR 108 158 -104 470 259 0 9 chr11 9226317 9226433 -141557120 - MIR SINE MIR -70 138 24 466 251 17 11 chr11 9226780 9226959 -141556594 + (TG)n Simple_repeat Simple_repeat 1 180 0 697 166 0 11 chr11 9226970 9227151 -141556402 + (TG)n Simple_repeat Simple_repeat 2 180 0 335 286 30 27 chr11 9227242 9227396 -141556157 + MIR SINE MIR 44 191 -62 1626 233 147 45 chr11 9227515 9228051 -141555502 + MLT1E LTR MaLR 3 593 0 834 274 15 0 chr11 9229908 9230109 -141553444 + MIR SINE MIR 8 211 -51 1476 241 109 47 chr11 9230109 9230338 -141553215 + MLT1H LTR MaLR 3 216 -333 1745 167 21 0 chr11 9230338 9230619 -141552934 + AluJb SINE Alu 7 293 -19 1476 241 109 47 chr11 9230619 9230904 -141552649 + MLT1H LTR MaLR 216 549 0 2639 26 0 0 chr11 9230926 9231229 -141552324 - AluY SINE Alu -8 303 1 291 165 282 0 chr11 9231419 9231504 -141552049 - MIR SINE MIR -63 145 37 974 222 53 0 chr11 9232100 9232289 -141551264 + MER63A DNA MER1_type 1 199 -11 190 435 9 9 chr11 9232696 9232811 -141550742 + MIR3 SINE MIR 65 179 -29 201 355 32 21 chr11 9233049 9233142 -141550411 - MIR SINE MIR -58 204 111 182 325 72 24 chr11 9236402 9236485 -141547068 + L3b LINE CR1 1477 1563 -20 199 167 0 0 chr11 9237161 9237191 -141546362 + MIR SINE MIR 81 110 -152 24 53 0 0 chr11 9238175 9238213 -141545340 + GC_rich Low_complexity Low_complexity 1 38 0 29 47 0 0 chr11 9238273 9238316 -141545237 + GC_rich Low_complexity Low_complexity 1 43 0 186 133 0 0 chr11 9238697 9238727 -141544826 + (GGGAGA)n Simple_repeat Simple_repeat 4 33 0 569 142 25 67 chr11 9239450 9239570 -141543983 - L2 LINE L2 -6 3307 3193 2146 113 0 3 chr11 9239714 9240024 -141543529 - AluSg SINE Alu -1 309 1 505 294 39 10 chr11 9240188 9240392 -141543161 + MIR SINE MIR 20 229 -33 509 238 9 9 chr11 9242326 9242431 -141541122 + MER81 DNA DNA 6 110 -4 590 194 82 47 chr11 9242674 9242844 -141540709 - MER69A DNA AcHobo 0 177 2 23 0 0 0 chr11 9243624 9243647 -141539906 + GC_rich Low_complexity Low_complexity 1 23 0 297 100 0 0 chr11 9244111 9244161 -141539392 + (TG)n Simple_repeat Simple_repeat 2 51 0 553 286 60 12 chr11 9245383 9245551 -141538002 + MER91A DNA MER1_type 21 196 0 322 332 26 0 chr11 9245837 9246027 -141537526 + L1M4 LINE L1 2170 2364 -3782 374 345 22 0 chr11 9246826 9247058 -141536495 + L1M4 LINE L1 2139 2375 -3771 919 283 71 48 chr11 9247065 9247713 -141535840 + L1M4 LINE L1 2856 3547 -2599 3473 135 15 2 chr11 9247713 9248262 -141535291 + L1MB2 LINE L1 5613 6168 -3 919 283 71 48 chr11 9248262 9248849 -141534704 + L1M4 LINE L1 3547 4119 -2027 265 317 35 95 chr11 9249203 9249436 -141534117 + L1MEd LINE L1 245 452 -5667 2064 111 7 13 chr11 9249436 9249734 -141533819 + AluSp SINE Alu 1 296 -17 265 317 35 95 chr11 9249734 9249847 -141533706 + L1MEd LINE L1 452 570 -5549 1157 8 0 0 chr11 9249847 9249979 -141533574 + AluYb8 SINE Alu 179 310 -8 2366 115 42 0 chr11 9250137 9250494 -141533059 + L1PB3 LINE L1 5783 6154 0 529 289 161 12 chr11 9252393 9252735 -141530818 + L3 LINE CR1 1143 1535 -42 850 283 163 30 chr11 9253183 9253265 -141530288 + L2 LINE L2 2271 2341 -973 4389 171 55 39 chr11 9253265 9254204 -141529349 + LTR13 LTR ERVK 1 954 0 850 283 163 30 chr11 9254204 9254630 -141528923 + L2 LINE L2 2341 2847 -467 464 218 42 109 chr11 9254789 9254982 -141528571 + L2 LINE L2 3132 3311 -2 2418 44 3 0 chr11 9255004 9255297 -141528256 - AluY SINE Alu -17 294 1 768 234 43 89 chr11 9256554 9256811 -141526742 + MIR SINE MIR 9 253 -9 693 259 74 26 chr11 9258443 9258713 -141524840 - LTR33 LTR ERVL -238 283 1 22 0 0 0 chr11 9259274 9259296 -141524257 + AT_rich Low_complexity Low_complexity 1 22 0 3714 80 31 0 chr11 9260414 9260890 -141522663 - L1P LINE L1 -5649 497 7 1477 133 0 0 chr11 9261061 9261272 -141522281 + AluSq SINE Alu 79 289 -24 11849 83 10 1 chr11 9261575 9263204 -141520349 - L1P LINE L1 -1485 4661 3018 1081 68 25 0 chr11 9263197 9263359 -141520194 + L1P LINE L1 4675 4840 -1306 * 270 0 0 0 chr11 9263459 9263489 -141520064 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 297 0 0 0 chr11 9263488 9263521 -141520032 + (TG)n Simple_repeat Simple_repeat 2 34 0 5424 110 15 23 chr11 9264248 9265148 -141518405 + L1MA4A LINE L1 5231 6122 -181 303 185 0 62 chr11 9265152 9265233 -141518320 + L1MA4A LINE L1 6188 6263 -40 7673 27 5 0 chr11 9265335 9266496 -141517057 + L1PA4 LINE L1 4980 6144 -11 1746 280 117 37 chr11 9266505 9267353 -141516200 + L1M4 LINE L1 2354 3133 -3013 1680 165 0 52 chr11 9267353 9267680 -141515873 + AluJo SINE Alu 1 310 -2 1746 280 117 37 chr11 9267680 9268358 -141515195 + L1M4 LINE L1 3133 4001 -2145 13473 41 1 3 chr11 9268473 9270123 -141513430 + L1P LINE L1 1422 3067 -3079 1360 209 38 48 chr11 9270223 9270301 -141513252 - L1M4 LINE L1 -1798 4348 4271 180 0 0 0 chr11 9270301 9270321 -141513232 + (TG)n Simple_repeat Simple_repeat 2 21 0 1360 209 38 48 chr11 9270321 9270581 -141512972 - L1M4 LINE L1 -1875 4271 4012 7540 71 22 2 chr11 9270581 9272395 -141511158 - L1PA7 LINE L1 -3 6151 4316 1360 209 38 48 chr11 9272395 9272428 -141511125 - L1M4 LINE L1 -2134 4012 3980 14994 27 5 0 chr11 9272574 9275041 -141508512 - L1PA4 LINE L1 -57 6098 3625 2163 102 7 3 chr11 9275152 9275457 -141508096 + AluSp SINE Alu 1 306 -7 7297 153 18 2 chr11 9275833 9278111 -141505442 - L1PB2 LINE L1 -1 6150 3837 374 171 199 74 chr11 9278281 9278394 -141505159 - MER112 DNA MER1_type -15 245 147 1709 169 3 10 chr11 9278394 9278701 -141504852 + AluJo SINE Alu 1 305 -7 374 171 199 74 chr11 9278701 9278763 -141504790 - MER112 DNA MER1_type -112 148 48 2149 123 0 0 chr11 9278774 9279058 -141504495 + AluSx SINE Alu 1 317 0 185 30 61 0 chr11 9279058 9279091 -141504462 + (CAA)n Simple_repeat Simple_repeat 2 180 0 778 269 60 0 chr11 9279493 9279694 -141503859 - MIR SINE MIR -9 253 41 216 283 0 0 chr11 9280078 9280131 -141503422 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 1076 156 12 34 chr11 9280209 9280609 -141502944 + MLT1D LTR MaLR 1 505 0 456 268 196 22 chr11 9280680 9280904 -141502649 + L3 LINE CR1 1191 1453 -124 422 269 35 47 chr11 9280948 9281119 -141502434 - MIR SINE MIR -40 222 54 245 379 73 8 chr11 9281183 9281307 -141502246 - L2 LINE L2 0 3272 3141 1913 127 64 11 chr11 9281491 9281868 -141501685 - LTR1 LTR ERV1 -355 430 34 431 133 0 0 chr11 9281868 9281928 -141501625 - AluS SINE Alu -258 60 1 497 313 88 0 chr11 9281928 9282145 -141501408 - L1M4 LINE L1 -2873 3273 3038 511 320 47 33 chr11 9282502 9283190 -141500363 - HAL1 LINE L1 -838 1669 973 1430 191 85 34 chr11 9283947 9284512 -141499041 + Charlie2 DNA MER1_type 2044 2637 -225 269 286 20 31 chr11 9284643 9284741 -141498812 + L3 LINE CR1 1480 1576 -1 1825 205 63 14 chr11 9284922 9285226 -141498327 + MER63B DNA MER1_type 1 332 -730 1859 140 16 45 chr11 9285226 9285540 -141498013 - AluJo SINE Alu -7 305 1 1825 205 63 14 chr11 9285540 9285649 -141497904 + MER63B DNA MER1_type 332 434 -2 6020 96 27 8 chr11 9286420 9287828 -141495725 - L1PA15 LINE L1 -8 6157 4722 3678 154 70 35 chr11 9287883 9289445 -141494108 - L1MB7 LINE L1 -19 6165 4556 297 161 0 16 chr11 9292908 9292970 -141490583 - MER116 DNA Mariner -19 61 1 2620 90 28 3 chr11 9292975 9293330 -141490223 + THE1B LTR MaLR 1 364 0 942 244 76 21 chr11 9293348 9293676 -141489877 - L1MC4a LINE L1 -1868 5940 5595 213 39 0 0 chr11 9293829 9293855 -141489698 + (TCTCCC)n Simple_repeat Simple_repeat 4 29 0 6153 77 17 7 chr11 9293875 9295392 -141488161 + SVA Other Other 32 1369 -17 22 0 0 0 chr11 9295395 9295417 -141488136 + AT_rich Low_complexity Low_complexity 1 22 0 851 185 11 0 chr11 9295417 9295651 -141487902 + L1M2 LINE L1 5211 5446 -743 965 127 5 89 chr11 9295657 9295870 -141487683 + MER6 DNA MER2_type 671 865 0 787 237 28 0 chr11 9295871 9295924 -141487629 + L1MA10 LINE L1 6111 6161 -173 186 43 0 0 chr11 9295924 9295947 -141487606 + (TAA)n Simple_repeat Simple_repeat 2 24 0 787 237 28 0 chr11 9295947 9296104 -141487449 + L1MA10 LINE L1 6161 6327 -7 1651 263 56 24 chr11 9296115 9297193 -141486360 + L1M3 LINE L1 4416 5557 -614 1994 117 21 3 chr11 9297193 9297483 -141486070 + AluSc SINE Alu 1 295 -14 1651 263 56 24 chr11 9297483 9297746 -141485807 + L1M3 LINE L1 5557 5810 -361 248 195 67 65 chr11 9297844 9297987 -141485566 + L1ME3A LINE L1 5811 5955 -211 1749 138 35 48 chr11 9298040 9298351 -141485202 - AluSq SINE Alu -6 307 1 446 225 43 7 chr11 9298407 9298545 -141485008 + L1ME3A LINE L1 6022 6164 -6 22 35 0 0 chr11 9298980 9299009 -141484544 + AT_rich Low_complexity Low_complexity 1 29 0 1366 125 76 163 chr11 9299167 9299640 -141483913 + LTR23 LTR ERV1 1 432 -5 664 228 24 134 chr11 9299955 9300209 -141483344 - MIR SINE MIR -31 231 6 1622 212 102 36 chr11 9300562 9301034 -141482519 + MLT1D LTR MaLR 3 505 0 575 296 73 45 chr11 9301588 9301757 -141481796 + L1M4 LINE L1 2850 3013 -3133 2114 132 0 3 chr11 9301757 9302067 -141481486 - AluSx SINE Alu -3 309 1 575 296 73 45 chr11 9302067 9302387 -141481166 + L1M4 LINE L1 3013 3353 -2793 1220 236 143 31 chr11 9302414 9302930 -141480623 - MLT1G LTR MaLR -16 574 1 357 319 69 5 chr11 9302932 9303120 -141480433 + L1M4 LINE L1 3370 3569 -2577 494 341 39 0 chr11 9303141 9303323 -141480230 - MER5A DNA MER1_type 0 189 1 1245 210 0 0 chr11 9303331 9303555 -141479998 + MER58A DNA MER1_type 1 224 0 425 291 24 0 chr11 9303733 9303860 -141479693 + MER117 DNA MER1_type 68 197 0 2418 71 0 0 chr11 9305070 9305366 -141478187 + AluSq SINE Alu 2 297 -16 460 247 91 0 chr11 9305493 9305647 -141477906 - L1 LINE L1 -1037 5109 4942 37465 70 7 25 chr11 9305656 9311752 -141471801 - L1PA6 LINE L1 -168 5986 1 3181 175 434 9 chr11 9311751 9312973 -141470580 - L1 LINE L1 -1189 4957 3217 * 603 277 148 57 chr11 9312978 9313473 -141470080 - L1MEd LINE L1 -5028 1091 552 3756 92 24 16 chr11 9313875 9314450 -141469103 + L1MA3 LINE L1 5726 6305 0 5146 225 67 42 chr11 9317117 9317699 -141465854 - L1ME2 LINE L1 0 6164 5598 2089 113 14 0 chr11 9317699 9317990 -141465563 + AluY SINE Alu 1 295 -16 5146 225 67 42 chr11 9317990 9318697 -141464856 - L1ME2 LINE L1 -566 5598 4910 2624 39 0 3 chr11 9318697 9319006 -141464547 + AluY SINE Alu 1 308 -3 5146 225 67 42 chr11 9319006 9320451 -141463102 - L1ME2 LINE L1 -1254 4910 3365 998 255 91 0 chr11 9320460 9320844 -141462709 + L1MDa LINE L1 1395 1813 -4727 475 250 58 21 chr11 9320865 9321053 -141462500 + L1MDa LINE L1 2095 2289 -4432 2235 169 37 13 chr11 9321482 9321989 -141461564 - MER68 LTR ERV1 0 562 1 335 320 76 20 chr11 9322163 9322360 -141461193 - MLT1H LTR MaLR -292 257 50 685 264 181 0 chr11 9322620 9322836 -141460717 - MIR SINE MIR -2 260 6 2289 125 0 0 chr11 9323297 9323609 -141459944 - AluSx SINE Alu 0 312 1 183 80 0 0 chr11 9324290 9324315 -141459238 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 610 311 18 58 chr11 9324400 9324677 -141458876 - L3 LINE CR1 -5 1572 1307 244 187 0 44 chr11 9324945 9325036 -141458517 + (TATATG)n Simple_repeat Simple_repeat 5 91 0 1055 176 20 20 chr11 9325925 9326124 -141457429 + MER58A DNA MER1_type 26 224 0 1695 167 62 0 chr11 9328377 9328682 -141454871 + Tigger6a DNA MER2_type 2 325 -758 753 164 14 0 chr11 9328677 9328817 -141454736 + Tigger6a DNA MER2_type 366 507 -576 * 1611 187 49 6 chr11 9328819 9329167 -141454386 + Tigger6a DNA MER2_type 720 1082 -1 206 234 31 47 chr11 9330020 9330084 -141453469 + L2 LINE L2 3251 3313 0 675 269 137 15 chr11 9330261 9330596 -141452957 + L1MC/D LINE L1 5374 5749 -2059 5740 139 28 16 chr11 9330650 9331994 -141451559 - L1PA14 LINE L1 0 6161 4803 2508 172 0 0 chr11 9332195 9332630 -141450923 - L1P LINE L1 -1215 4931 4497 855 133 47 0 chr11 9332871 9332999 -141450554 - AluJo SINE Alu -178 134 1 1569 144 72 22 chr11 9333608 9333885 -141449668 + AluJo SINE Alu 3 293 -19 1383 292 108 15 chr11 9333969 9334862 -141448691 - L1M4 LINE L1 -924 5222 4247 1086 94 29 12 chr11 9336255 9336425 -141447128 + MER30 DNA MER1_type 1 173 -57 293 319 142 35 chr11 9336515 9336656 -141446897 + L2 LINE L2 3117 3272 0 2389 87 0 0 chr11 9336724 9337022 -141446531 - AluSg SINE Alu -12 298 1 248 294 59 73 chr11 9337855 9337991 -141445562 + L2 LINE L2 3139 3272 0 238 309 0 15 chr11 9338064 9338132 -141445421 - MER5A DNA MER1_type 0 189 123 1596 298 63 21 chr11 9339222 9339796 -141443757 + L2 LINE L2 2111 2708 -606 2011 92 18 95 chr11 9339800 9340127 -141443426 + AluSc SINE Alu 1 302 -7 215 281 62 0 chr11 9340169 9340233 -141443320 + L2 LINE L2 3242 3309 -4 907 260 115 11 chr11 9340398 9340667 -141442886 - MLT1J LTR MaLR -59 452 156 270 304 87 9 chr11 9340801 9340916 -141442637 - L2 LINE L2 -27 3286 3163 27 0 0 0 chr11 9342020 9342047 -141441506 + AT_rich Low_complexity Low_complexity 1 27 0 2175 123 0 0 chr11 9342554 9342855 -141440698 - AluSx SINE Alu -11 301 1 250 325 133 21 chr11 9345038 9345226 -141438327 - L2 LINE L2 -1 3312 3104 204 40 0 0 chr11 9345629 9345654 -141437899 + (CATGC)n Simple_repeat Simple_repeat 3 27 0 245 116 58 0 chr11 9345675 9345744 -141437809 + (TA)n Simple_repeat Simple_repeat 1 73 0 336 360 75 18 chr11 9345767 9346045 -141437508 - L2 LINE L2 -570 2744 2451 23 33 0 0 chr11 9346440 9346470 -141437083 + AT_rich Low_complexity Low_complexity 1 30 0 1677 184 3 20 chr11 9347217 9347516 -141436037 - AluJo SINE Alu -18 294 1 335 250 30 50 chr11 9347711 9347811 -141435742 - MIR SINE MIR -86 176 79 357 93 0 0 chr11 9347874 9347928 -141435625 + (CA)n Simple_repeat Simple_repeat 2 55 0 1438 151 94 51 chr11 9348631 9348982 -141434571 + L1ME2 LINE L1 5799 6164 0 538 289 98 100 chr11 9349113 9349583 -141433970 + L1ME1 LINE L1 2636 3106 -3040 1480 187 20 47 chr11 9349583 9349883 -141433670 + AluJo SINE Alu 8 299 -13 538 289 98 100 chr11 9349883 9349993 -141433560 + L1ME1 LINE L1 3106 3215 -2931 299 268 37 0 chr11 9350093 9350175 -141433378 - MIR SINE MIR -29 233 149 579 269 0 7 chr11 9350252 9350393 -141433160 + L2 LINE L2 3172 3311 -2 227 335 16 11 chr11 9350458 9350640 -141432913 + L1ME1 LINE L1 3300 3482 -2664 432 127 0 14 chr11 9350730 9350801 -141432752 - L1P LINE L1 -1475 4671 4602 6060 83 16 10 chr11 9350906 9351565 -141431988 + L1PA7 LINE L1 4711 5364 -790 15285 30 7 0 chr11 9351565 9354158 -141429395 + L1PA4 LINE L1 3550 6154 -1 6060 55 1 7 chr11 9354163 9354933 -141428620 + L1PA7 LINE L1 5387 6152 -2 6060 83 16 10 chr11 9354933 9354960 -141428593 + L1PA7 LINE L1 5367 6152 -2 427 255 204 4 chr11 9355024 9355255 -141428298 + L1ME1 LINE L1 3638 3914 -2232 * 3123 189 22 84 chr11 9355243 9356178 -141427375 + L1ME1 LINE L1 5318 6176 -2 2070 128 7 0 chr11 9356289 9356579 -141426974 + AluSx SINE Alu 1 292 -20 1529 164 13 34 chr11 9356866 9357164 -141426389 + AluJb SINE Alu 1 292 -20 22 0 0 0 chr11 9357747 9357769 -141425784 + AT_rich Low_complexity Low_complexity 1 22 0 448 262 93 0 chr11 9358321 9358428 -141425125 - L2 LINE L2 0 3313 3197 2210 90 0 10 chr11 9359892 9360182 -141423371 + AluY SINE Alu 1 287 -24 317 200 167 22 chr11 9360334 9360424 -141423129 + MIR SINE MIR 49 151 -57 1483 127 139 11 chr11 9360533 9360800 -141422753 + L1MC1 LINE L1 6025 6325 -8 345 343 98 59 chr11 9361380 9361888 -141421665 - L2 LINE L2 0 3272 2732 998 238 116 47 chr11 9361969 9362288 -141421265 - MER58B DNA MER1_type 0 341 1 207 322 20 72 chr11 9362461 9362613 -141420940 - L3 LINE CR1 -591 986 843 4218 246 85 10 chr11 9363249 9364569 -141418984 + L1MEc LINE L1 35 1453 -4943 785 270 0 38 chr11 9364926 9365137 -141418416 - MIR SINE MIR -54 208 6 459 224 0 0 chr11 9366316 9366423 -141417130 + (TA)n Simple_repeat Simple_repeat 2 108 0 363 163 0 0 chr11 9366493 9366573 -141416980 + GA-rich Low_complexity Low_complexity 1 80 0 2159 116 0 54 chr11 9367099 9367452 -141416101 - MER1B DNA MER1_type 0 337 4 2209 137 19 25 chr11 9369829 9370195 -141413358 - THE1B LTR MaLR 0 364 1 11707 88 14 6 chr11 9370195 9371703 -141411850 - THE1B-int LTR MaLR 0 1580 58 2179 127 0 0 chr11 9371703 9371995 -141411558 + AluSc SINE Alu 1 292 -17 11707 88 14 6 chr11 9371995 9372054 -141411499 - THE1B-int LTR MaLR -1522 58 1 2245 121 28 25 chr11 9372054 9372417 -141411136 - THE1B LTR MaLR 0 364 1 13779 130 61 3 chr11 9372838 9375121 -141408432 - Tigger1 DNA MER2_type 0 2418 2 325 300 8 8 chr11 9375557 9375687 -141407866 + HAL1b LINE L1 1209 1338 -10 24 0 0 0 chr11 9375949 9375973 -141407580 + AT_rich Low_complexity Low_complexity 1 24 0 1668 186 3 14 chr11 9375976 9376267 -141407286 - AluJo SINE Alu -24 288 1 1474 166 70 0 chr11 9376385 9376644 -141406909 - Tigger1 DNA MER2_type -1912 506 230 25 75 0 0 chr11 9376704 9376757 -141406796 + AT_rich Low_complexity Low_complexity 1 53 0 24 0 0 0 chr11 9377323 9377347 -141406206 + AT_rich Low_complexity Low_complexity 1 24 0 1094 210 39 11 chr11 9377929 9378215 -141405338 + AluSq SINE Alu 1 294 -9 322 345 16 41 chr11 9378555 9378749 -141404804 + L1MC4a LINE L1 7227 7415 -393 1205 182 11 42 chr11 9378753 9378883 -141404670 - L1MDb LINE L1 -4793 1534 1401 1602 155 44 73 chr11 9378883 9379088 -141404465 - AluJo SINE Alu -4 308 114 2347 98 3 0 chr11 9379088 9379394 -141404159 - AluSx SINE Alu -4 308 2 1602 155 44 73 chr11 9379394 9379505 -141404048 - AluJo SINE Alu -198 114 1 1205 182 11 42 chr11 9379505 9379713 -141403840 - L1MDb LINE L1 -4926 1401 929 742 104 9 14 chr11 9379741 9379957 -141403596 + AluSg SINE Alu 2 310 0 1608 175 14 7 chr11 9380021 9380313 -141403240 + AluJb SINE Alu 1 294 -18 1099 220 46 9 chr11 9380350 9380568 -141402985 - MIR SINE MIR -31 231 6 199 161 0 0 chr11 9380834 9380865 -141402688 + L2 LINE L2 3241 3271 -1 2763 210 28 58 chr11 9382051 9382314 -141401239 + L1MA9 LINE L1 5521 5790 -522 1443 208 26 29 chr11 9382314 9382626 -141400927 + AluJo SINE Alu 1 311 -1 2763 210 28 58 chr11 9382626 9383082 -141400471 + L1MA9 LINE L1 5790 6218 -94 261 0 0 0 chr11 9383082 9383111 -141400442 + (TC)n Simple_repeat Simple_repeat 2 30 0 2763 210 28 58 chr11 9383111 9383166 -141400387 + L1MA9 LINE L1 6218 6273 -39 22 35 0 0 chr11 9383263 9383292 -141400261 + AT_rich Low_complexity Low_complexity 1 29 0 1056 180 43 5 chr11 9384529 9384740 -141398813 + MER20 DNA MER1_type 1 219 0 1810 129 43 7 chr11 9384844 9385123 -141398430 - AluJb SINE Alu -21 291 3 3103 91 24 4 chr11 9385549 9386011 -141397542 + L1MA1 LINE L1 5832 6302 0 1874 46 0 13 chr11 9386124 9386362 -141397191 - L1PA7 LINE L1 0 6154 5920 334 136 25 0 chr11 9386415 9386496 -141397057 + (TA)n Simple_repeat Simple_repeat 2 84 0 268 341 23 8 chr11 9387701 9387830 -141395723 - L2 LINE L2 -4 3309 3179 421 164 2 0 chr11 9387853 9387936 -141395617 + L1 LINE L1 4657 4740 -1406 2884 131 49 10 chr11 9387936 9388426 -141395127 - Tigger3(Golem) DNA MER2_type 0 3029 2521 6134 166 48 29 chr11 9388426 9389320 -141394233 - L1MA4 LINE L1 -11 6289 5413 2320 100 3 0 chr11 9389320 9389631 -141393922 - AluSq SINE Alu -1 312 1 6134 166 48 29 chr11 9389631 9389919 -141393634 - L1MA4 LINE L1 -887 5413 5132 3155 32 0 0 chr11 9389919 9390292 -141393261 + L1PA5 LINE L1 5782 6154 0 6134 166 48 29 chr11 9390292 9392059 -141391494 - L1MA4 LINE L1 -1168 5132 3177 349 138 11 23 chr11 9392377 9392464 -141391089 - L1MA4 LINE L1 -2952 3194 3109 709 122 0 0 chr11 9392464 9392562 -141390991 - AluSg SINE Alu -212 98 1 3394 89 16 10 chr11 9392562 9393056 -141390497 - THE1B-int LTR MaLR -1083 497 1 820 137 75 27 chr11 9393067 9393213 -141390340 - THE1B LTR MaLR -15 349 197 2045 156 0 0 chr11 9393252 9393547 -141390006 - AluSx SINE Alu -17 295 1 743 289 0 5 chr11 9393547 9393758 -141389795 - L1M3b LINE L1 -4976 1305 1096 852 323 46 32 chr11 9394023 9394524 -141389029 - L1M3b LINE L1 -5769 512 5 1708 82 10 33 chr11 9394524 9394827 -141388726 - Tigger3(Golem) DNA MER2_type -486 2543 2248 2013 132 0 7 chr11 9394931 9395220 -141388333 + AluSp SINE Alu 10 296 -17 520 196 142 88 chr11 9396248 9396488 -141387065 - MER112 DNA MER1_type 0 260 8 334 239 36 56 chr11 9397111 9397287 -141386266 + MLT1L LTR MaLR 7 138 -308 736 272 111 0 chr11 9397447 9397749 -141385804 + L2 LINE L2 2793 3138 -175 366 23 0 0 chr11 9398171 9398214 -141385339 + (CA)n Simple_repeat Simple_repeat 2 44 0 2170 70 10 73 chr11 9400164 9400478 -141383075 + AluSc SINE Alu 1 294 -15 2199 128 0 0 chr11 9400592 9400897 -141382656 + AluSx SINE Alu 1 305 -7 182 241 19 74 chr11 9400925 9400979 -141382574 + L2 LINE L2 3215 3265 -7 425 242 245 49 chr11 9401042 9401368 -141382185 + L3 LINE CR1 1181 1570 -7 22 0 0 0 chr11 9402342 9402364 -141381189 + AT_rich Low_complexity Low_complexity 1 22 0 222 270 16 16 chr11 9402387 9402450 -141381103 + L2 LINE L2 3150 3212 -60 303 277 8 108 chr11 9403691 9403736 -141379817 + MIR SINE MIR 119 167 -95 2351 68 0 7 chr11 9403736 9404062 -141379491 - AluY SINE Alu 0 311 1 303 277 8 108 chr11 9404062 9404146 -141379407 + MIR SINE MIR 167 235 -27 385 331 16 8 chr11 9404178 9404302 -141379251 - L2 LINE L2 -221 3051 2927 1031 321 67 29 chr11 9406958 9407683 -141375870 + L2 LINE L2 2464 3203 -69 763 326 112 58 chr11 9407692 9408173 -141375380 - L2 LINE L2 -584 2730 2192 1926 147 13 0 chr11 9408173 9408472 -141375081 + AluJb SINE Alu 1 303 -9 763 326 112 58 chr11 9408472 9408748 -141374805 - L2 LINE L2 -1122 2192 1932 5825 211 26 44 chr11 9408780 9410006 -141373547 + L1M4 LINE L1 8 1254 -5288 1781 187 10 3 chr11 9410006 9410316 -141373237 + AluJo SINE Alu 1 312 0 5825 211 26 44 chr11 9410316 9410397 -141373156 + L1M4 LINE L1 1254 1335 -5207 1660 201 55 26 chr11 9410397 9410780 -141372773 - MSTD LTR MaLR 0 396 3 5825 211 26 44 chr11 9410780 9410962 -141372591 + L1M4 LINE L1 1335 1472 -5070 38449 83 4 7 chr11 9410980 9417133 -141366420 + L1PA6 LINE L1 11 6147 -7 225 214 0 0 chr11 9417142 9417184 -141366369 + A-rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr11 9417568 9417591 -141365962 + AT_rich Low_complexity Low_complexity 1 23 0 2516 61 0 0 chr11 9417608 9417903 -141365650 - AluY SINE Alu -16 295 1 1576 189 32 74 chr11 9418113 9418496 -141365057 + L1M4 LINE L1 1464 1825 -4821 2047 129 30 3 chr11 9418496 9418791 -141364762 - AluJb SINE Alu -9 303 1 1576 189 32 74 chr11 9418791 9418878 -141364675 + L1M4 LINE L1 1825 1914 -4732 888 219 25 21 chr11 9418887 9419125 -141364428 + L1M4 LINE L1 4137 4375 -2269 506 143 0 12 chr11 9619134 9619218 -141164335 - AluJ/FLAM SINE Alu -228 84 2 2185 93 0 4 chr11 9619282 9619562 -141163991 + AluSx SINE Alu 20 298 -14 21 36 0 0 chr11 9621296 9621324 -141162229 + AT_rich Low_complexity Low_complexity 1 28 0 1115 126 0 13 chr11 9621395 9621554 -141161999 + AluJo SINE Alu 125 281 -31 33 0 8 0 chr11 9621554 9621632 -141161921 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr11 9621761 9621794 -141161759 + AT_rich Low_complexity Low_complexity 1 33 0 1885 149 13 3 chr11 9622327 9622628 -141160925 + AluJb SINE Alu 1 304 -8 333 282 110 23 chr11 9623647 9623882 -141159671 - L1MC/D LINE L1 -456 5665 5504 280 344 0 0 chr11 9624397 9624490 -141159063 + MER5B DNA MER1_type 24 116 -62 1784 136 63 14 chr11 9624507 9624793 -141158760 - AluSx SINE Alu -12 300 1 1739 165 7 34 chr11 9625142 9625439 -141158114 + AluJo SINE Alu 1 289 -23 2264 107 0 3 chr11 9625442 9625740 -141157813 + AluSx SINE Alu 1 297 -15 261 0 0 0 chr11 9625741 9625770 -141157783 + (TA)n Simple_repeat Simple_repeat 1 29 0 2286 95 0 0 chr11 9626069 9626380 -141157173 + AluSx SINE Alu 1 311 0 1269 113 0 11 chr11 9626384 9626570 -141156983 + AluSg/x SINE Alu 129 312 0 2258 74 14 7 chr11 9627452 9627737 -141155816 + AluSq SINE Alu 1 287 -26 240 35 0 0 chr11 9627740 9627769 -141155784 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2077 152 0 0 chr11 9627859 9628162 -141155391 - AluSx SINE Alu -9 303 1 1999 132 16 13 chr11 9628539 9628850 -141154703 + AluSq SINE Alu 1 312 -1 318 50 0 0 chr11 9628985 9629025 -141154528 + (TG)n Simple_repeat Simple_repeat 1 40 0 299 328 51 69 chr11 9630075 9630407 -141153146 + L2 LINE L2 2925 3250 -22 1768 150 27 14 chr11 9630584 9630877 -141152676 + AluJb SINE Alu 11 307 -5 1985 149 0 0 chr11 9631062 9631366 -141152187 + AluJo SINE Alu 1 304 0 2269 107 0 0 chr11 9631432 9631721 -141151832 - AluSg SINE Alu -21 289 1 3060 141 29 72 chr11 9632129 9632178 -141151375 + MER41D LTR ERV1 1 51 -506 2127 97 19 55 chr11 9632178 9632488 -141151065 - AluSx SINE Alu -13 299 1 3060 141 29 72 chr11 9632488 9632666 -141150887 + MER41D LTR ERV1 51 235 -322 1993 138 13 7 chr11 9632666 9632971 -141150582 + AluJo SINE Alu 1 307 -5 3060 141 29 72 chr11 9632971 9633198 -141150355 + MER41D LTR ERV1 235 428 -129 2222 112 3 3 chr11 9633198 9633494 -141150059 - AluSx SINE Alu -16 296 1 3060 141 29 72 chr11 9633494 9633619 -141149934 + MER41D LTR ERV1 428 557 0 412 224 213 11 chr11 9633670 9633844 -141149709 - MLT1K LTR MaLR 0 588 380 189 0 0 0 chr11 9634091 9634112 -141149441 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1328 154 33 9 chr11 9634126 9634340 -141149213 - AluJb SINE Alu -30 282 64 2291 89 3 3 chr11 9634340 9634632 -141148921 - AluSp SINE Alu -21 292 1 1914 124 4 0 chr11 9634871 9635130 -141148423 - AluSq SINE Alu -53 260 1 237 277 128 69 chr11 9635395 9635583 -141147970 + MIR SINE MIR 37 235 -27 1823 163 3 3 chr11 9635602 9635908 -141147645 + AluJb SINE Alu 1 306 0 214 304 132 25 chr11 9635930 9636256 -141147297 + L2 LINE L2 1728 2088 -1226 3356 142 2 31 chr11 9636277 9636818 -141146735 + MER1A DNA MER1_type 1 525 -2 218 341 57 0 chr11 9636885 9636973 -141146580 + MIR SINE MIR 48 140 -122 2234 116 0 6 chr11 9637034 9637345 -141146208 + AluSg SINE Alu 1 309 -1 2436 84 3 0 chr11 9638324 9638634 -141144919 - AluSp SINE Alu 0 313 3 2334 106 0 0 chr11 9638635 9638936 -141144617 - AluSg1 SINE Alu -8 301 1 384 77 0 0 chr11 9640063 9640115 -141143438 + (TG)n Simple_repeat Simple_repeat 1 52 0 2180 98 10 3 chr11 9640236 9640532 -141143021 - AluSx SINE Alu -13 299 2 2271 111 3 0 chr11 9640535 9640832 -141142721 - AluSg SINE Alu -12 298 1 2275 108 3 3 chr11 9641002 9641307 -141142246 + AluSg SINE Alu 2 306 -4 350 262 62 0 chr11 9641448 9641593 -141141960 + L1MC5 LINE L1 7311 7464 -497 272 237 113 41 chr11 9641626 9641723 -141141830 + L1MC4 LINE L1 7634 7737 -305 874 211 18 0 chr11 9641819 9641990 -141141563 + AluSg/x SINE Alu 113 286 -24 1588 190 6 25 chr11 9642624 9642950 -141140603 - 7SLRNA srpRNA srpRNA 0 320 1 1008 238 114 65 chr11 9643003 9643100 -141140453 - L1MC4a LINE L1 -1944 5864 5773 2149 105 23 10 chr11 9643100 9643405 -141140148 + AluSg SINE Alu 1 309 -1 1008 238 114 65 chr11 9643405 9643596 -141139957 - L1MC4a LINE L1 -2035 5773 5593 306 0 0 0 chr11 9643596 9643630 -141139923 + (CA)n Simple_repeat Simple_repeat 2 35 0 1008 238 114 65 chr11 9643630 9643786 -141139767 - L1MC4a LINE L1 -2215 5593 5397 1989 86 4 0 chr11 9644694 9644986 -141138567 + AluSg SINE Alu 37 329 0 562 192 0 0 chr11 9645736 9645835 -141137718 - U13 snRNA snRNA -2 102 4 191 261 11 57 chr11 9647562 9647650 -141135903 - L3 LINE CR1 -852 725 642 36 53 0 0 chr11 9649292 9649349 -141134204 + GC_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr11 9649449 9649470 -141134083 + GC_rich Low_complexity Low_complexity 1 21 0 35 78 0 0 chr11 9649668 9649745 -141133808 + GC_rich Low_complexity Low_complexity 1 77 0 237 65 0 0 chr11 9649800 9649831 -141133722 + (TCC)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr11 9649876 9649907 -141133646 + GC_rich Low_complexity Low_complexity 1 31 0 33 0 0 0 chr11 9650399 9650432 -141133121 + GC_rich Low_complexity Low_complexity 1 33 0 2266 98 3 22 chr11 9651155 9651471 -141132082 - AluSx SINE Alu -2 310 1 1933 92 32 51 chr11 9651526 9651840 -141131713 - AluSx SINE Alu -4 308 1 1737 139 7 36 chr11 9652451 9652752 -141130801 - AluJb SINE Alu -10 302 11 1875 167 3 10 chr11 9653293 9653592 -141129961 + AluJb SINE Alu 4 300 -12 2035 153 3 0 chr11 9653993 9654294 -141129259 - AluJb SINE Alu -10 302 1 304 293 151 46 chr11 9654321 9654560 -141128993 + L2 LINE L2 3009 3272 0 2579 53 0 0 chr11 9655710 9656013 -141127540 - AluY SINE Alu -8 303 1 1885 147 17 3 chr11 9656089 9656382 -141127171 + AluJb SINE Alu 1 297 -15 21 0 0 0 chr11 9656618 9656639 -141126914 + AT_rich Low_complexity Low_complexity 1 21 0 309 0 0 0 chr11 9657269 9657305 -141126248 - MER11C LTR ERVK -1035 36 1 378 254 152 0 chr11 9658046 9658184 -141125369 - MIR SINE MIR -10 252 94 35 0 0 0 chr11 9658234 9658269 -141125284 + AT_rich Low_complexity Low_complexity 1 35 0 1748 146 46 30 chr11 9658297 9658599 -141124954 - AluJo SINE Alu -5 307 1 414 271 33 33 chr11 9658916 9659067 -141124486 - L2 LINE L2 -193 3120 2970 2077 148 0 0 chr11 9659221 9659519 -141124034 + AluSx SINE Alu 1 298 -14 2069 120 7 13 chr11 9659638 9659937 -141123616 + AluSx SINE Alu 1 297 -15 9501 125 38 66 chr11 9659955 9661070 -141122483 + L1M1 LINE L1 22 1167 -6398 1924 168 13 0 chr11 9661070 9661373 -141122180 + AluSx SINE Alu 1 307 -5 9501 125 38 66 chr11 9661373 9662673 -141120880 + L1M1 LINE L1 1167 3044 -4521 1305 173 35 35 chr11 9662673 9662933 -141120620 + AluJo SINE Alu 45 304 -8 9621 146 23 39 chr11 9662933 9663079 -141120474 + L1M1 LINE L1 3038 3185 -4380 2190 113 0 0 chr11 9663079 9663403 -141120150 + AluSg SINE Alu 1 324 0 9621 146 23 39 chr11 9663403 9664009 -141119544 + L1M1 LINE L1 3185 3800 -3765 2430 93 0 0 chr11 9664009 9664309 -141119244 + AluSx SINE Alu 1 300 -12 9621 146 23 39 chr11 9664309 9664972 -141118581 + L1M1 LINE L1 3800 4473 -3092 1782 164 4 11 chr11 9664972 9665282 -141118271 + AluSx SINE Alu 3 310 0 9621 146 23 39 chr11 9665282 9665455 -141118098 + L1M1 LINE L1 4473 4647 -2918 2321 70 40 7 chr11 9665455 9665756 -141117797 + AluY SINE Alu 1 311 0 9621 146 23 39 chr11 9665756 9666314 -141117239 + L1M1 LINE L1 4647 5213 -2352 9412 96 8 21 chr11 9666314 9667617 -141115936 - HSMAR1 DNA Mariner 0 1287 3 9621 146 23 39 chr11 9667617 9667873 -141115680 + L1M1 LINE L1 5213 5472 -2093 2287 108 0 7 chr11 9667873 9668178 -141115375 + AluSq SINE Alu 1 303 -10 9621 146 23 39 chr11 9668178 9668512 -141115041 + L1M1 LINE L1 5472 5742 -1823 2260 119 0 0 chr11 9668596 9668890 -141114663 + AluSg SINE Alu 1 294 -16 1183 110 0 0 chr11 9668890 9669054 -141114499 + L1MA2 LINE L1 6141 6304 0 21 36 0 0 chr11 9669054 9669082 -141114471 + AT_rich Low_complexity Low_complexity 1 28 0 2296 109 3 0 chr11 9669664 9669968 -141113585 - AluSx SINE Alu -7 305 1 2432 46 0 3 chr11 9670213 9670529 -141113024 - AluY SINE Alu 0 315 1 359 210 76 59 chr11 9670614 9670733 -141112820 - L1M4 LINE L1 -1964 4182 4062 2205 87 17 3 chr11 9670754 9671043 -141112510 + AluSx SINE Alu 1 293 -19 4207 139 70 3 chr11 9671044 9671718 -141111835 - Tigger1 DNA MER2_type -1655 763 45 2046 155 0 3 chr11 9671718 9672027 -141111526 + AluSx SINE Alu 1 308 -4 327 154 0 0 chr11 9672066 9672118 -141111435 + Tigger7 DNA MER2_type 5 56 -283 296 164 36 0 chr11 9672139 9672194 -141111359 - Tigger1 DNA MER2_type -2361 57 1 32 44 0 29 chr11 9672215 9672266 -141111287 + AT_rich Low_complexity Low_complexity 1 51 -15 2237 104 3 0 chr11 9672266 9672553 -141111000 - AluSx SINE Alu -24 288 1 32 44 0 29 chr11 9672553 9672569 -141110984 + AT_rich Low_complexity Low_complexity 51 66 0 266 254 62 110 chr11 9672846 9673120 -141110433 - L1P LINE L1 -2705 3441 3155 2519 64 3 0 chr11 9673120 9673416 -141110137 - AluSg SINE Alu -13 297 1 1713 190 7 0 chr11 9673423 9673713 -141109840 - AluJo SINE Alu -20 292 1 266 254 62 110 chr11 9673713 9673930 -141109623 - L1P LINE L1 -2997 3149 2966 907 217 211 29 chr11 9673970 9674086 -141109467 - L1ME3A LINE L1 0 6170 6076 634 201 107 53 chr11 9674086 9674166 -141109387 - MER45A DNA AcHobo -1403 178 104 2441 71 0 0 chr11 9674166 9674470 -141109083 + AluSx SINE Alu 1 304 0 634 201 107 53 chr11 9674470 9674557 -141108996 - MER45A DNA AcHobo -1477 104 1 907 217 211 29 chr11 9674557 9674753 -141108800 - L1ME3A LINE L1 -94 6076 5801 1934 165 0 0 chr11 9674765 9675062 -141108491 + AluSx SINE Alu 1 297 -15 44036 33 21 1 chr11 9675125 9681155 -141102398 + L1PA3 LINE L1 3 6155 0 292 47 0 0 chr11 9681719 9681762 -141101791 + AluY SINE Alu 259 301 0 22 56 0 0 chr11 9681942 9681978 -141101575 + AT_rich Low_complexity Low_complexity 1 36 0 1883 154 11 0 chr11 9681993 9682278 -141101275 + AluJb SINE Alu 1 288 -24 1378 136 0 0 chr11 9682278 9682476 -141101077 + AluSg/x SINE Alu 107 304 -6 878 178 6 30 chr11 9682479 9682648 -141100905 + AluJo/FRAM SINE Alu 137 301 -1 408 141 0 16 chr11 9682652 9682716 -141100837 - MLT1D LTR MaLR -442 63 1 260 179 179 15 chr11 9682797 9682864 -141100689 - L1ME3A LINE L1 -2029 5779 5702 1572 161 3 49 chr11 9682939 9683243 -141100310 + AluJb SINE Alu 1 290 -22 1566 150 135 0 chr11 9683256 9683522 -141100031 + AluSx SINE Alu 1 302 0 781 226 52 0 chr11 9683539 9683694 -141099859 + FRAM SINE Alu 4 166 0 272 309 49 0 chr11 9683697 9683778 -141099775 - L1ME3A LINE L1 -2289 5519 5435 2606 67 0 3 chr11 9683784 9684096 -141099457 - AluY SINE Alu 0 311 1 353 196 20 20 chr11 9684130 9684232 -141099321 - L1ME3A LINE L1 -2360 5448 5347 1986 116 0 0 chr11 9684286 9684544 -141099009 + AluSx SINE Alu 1 258 -54 195 42 0 0 chr11 9684603 9684627 -141098926 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 2452 78 3 3 chr11 9685192 9685500 -141098053 + AluSq SINE Alu 1 308 -5 2235 104 0 3 chr11 9685500 9685797 -141097756 + AluSx SINE Alu 1 296 -16 180 0 0 0 chr11 9686606 9686626 -141096927 + (T)n Simple_repeat Simple_repeat 1 20 0 1140 188 76 144 chr11 9686879 9687036 -141096517 - MER4C LTR ERV1 0 465 299 2692 88 119 12 chr11 9687036 9687456 -141096097 - MER4C LTR ERV1 0 465 1 1140 188 76 144 chr11 9687456 9687797 -141095756 - MER4C LTR ERV1 -166 299 1 496 194 39 10 chr11 9688179 9688282 -141095271 - MER45B DNA AcHobo 0 1040 935 1163 108 84 25 chr11 9688282 9688355 -141095198 + L1MB3 LINE L1 5887 5954 -229 2014 100 0 81 chr11 9688355 9688696 -141094857 + AluSx SINE Alu 1 316 0 1163 108 84 25 chr11 9688696 9688824 -141094729 + L1MB3 LINE L1 5954 6101 -82 1107 162 0 0 chr11 9688824 9688997 -141094556 + MER2 DNA MER2_type 1 173 -172 915 132 0 0 chr11 9689092 9689221 -141094332 - FLAM_C SINE Alu -9 134 6 450 138 0 0 chr11 9689225 9689290 -141094263 + MER2 DNA MER2_type 271 335 -10 292 124 106 4 chr11 9689311 9689383 -141094170 + L1MB3 LINE L1 6100 6180 0 999 176 50 31 chr11 9689393 9689477 -141094076 - MER45B DNA AcHobo -643 938 857 2289 100 3 3 chr11 9689477 9689777 -141093776 + AluSx SINE Alu 1 300 -12 999 176 50 31 chr11 9689777 9689914 -141093639 - MER45B DNA AcHobo -724 857 713 1098 265 87 47 chr11 9690104 9690544 -141093009 - MER45C DNA AcHobo -347 606 101 1860 148 45 0 chr11 9690544 9690835 -141092718 + AluJb SINE Alu 1 304 -8 1098 265 87 47 chr11 9690835 9690941 -141092612 - MER45C DNA AcHobo -852 101 1 393 270 35 47 chr11 9692639 9692839 -141090714 + MIR SINE MIR 17 213 -49 23 54 0 0 chr11 9692944 9692981 -141090572 + AT_rich Low_complexity Low_complexity 1 37 0 1048 141 0 40 chr11 9694218 9694357 -141089196 + AluJo SINE Alu 1 133 -179 2262 70 3 33 chr11 9694357 9694659 -141088894 + AluY SINE Alu 1 293 -18 1048 141 0 40 chr11 9694659 9694696 -141088857 + AluJo SINE Alu 133 170 -142 823 138 0 0 chr11 9694750 9694866 -141088687 + FLAM_C SINE Alu 3 118 -15 26 50 0 0 chr11 9694866 9694906 -141088647 + AT_rich Low_complexity Low_complexity 1 40 0 1567 114 5 0 chr11 9695126 9695337 -141088216 - AluJb SINE Alu -20 292 81 1690 166 7 14 chr11 9695340 9695630 -141087923 - AluJb SINE Alu -24 288 1 634 246 66 44 chr11 9697065 9697293 -141086260 + L1ME LINE L1 1 233 -5837 255 327 18 0 chr11 9697313 9697423 -141086130 + L1ME LINE L1 290 401 -5669 2336 93 7 0 chr11 9697424 9697725 -141085828 - AluSx SINE Alu -9 303 1 24 0 0 0 chr11 9697727 9697751 -141085802 + AT_rich Low_complexity Low_complexity 1 24 0 2565 31 0 3 chr11 9697751 9698039 -141085514 - AluY SINE Alu -24 287 1 431 272 0 0 chr11 9698301 9698415 -141085138 + L1ME LINE L1 526 639 -5431 1488 88 0 34 chr11 9698422 9698626 -141084927 + AluSq SINE Alu 1 197 -116 2381 89 3 0 chr11 9698697 9699000 -141084553 + AluSq SINE Alu 1 304 -9 21 0 0 0 chr11 9699079 9699100 -141084453 + AT_rich Low_complexity Low_complexity 1 21 0 469 217 0 0 chr11 9699102 9699194 -141084359 + FLAM_A SINE Alu 2 93 -49 413 125 0 0 chr11 9699211 9699267 -141084286 - AluS SINE Alu -260 58 3 360 205 197 0 chr11 9699270 9699397 -141084156 - L1M4 LINE L1 -3016 3130 2979 2143 123 3 3 chr11 9699406 9699708 -141083845 - AluSx SINE Alu -10 302 1 1030 244 32 86 chr11 9699710 9699892 -141083661 + L1M4 LINE L1 3314 3504 -2642 180 0 0 0 chr11 9699892 9699912 -141083641 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1030 244 32 86 chr11 9699912 9700195 -141083358 + L1M4 LINE L1 3504 3750 -2396 1659 158 25 19 chr11 9700195 9700511 -141083042 + L1MC1 LINE L1 6016 6333 0 1030 244 32 86 chr11 9700511 9700569 -141082984 + L1M4 LINE L1 3750 3810 -2336 446 168 69 20 chr11 9700580 9700681 -141082872 + L1ME2 LINE L1 5419 5524 -638 469 110 27 0 chr11 9700681 9700754 -141082799 - AluSg SINE Alu -6 306 232 1061 198 37 8 chr11 9700862 9701105 -141082448 - AluSg SINE Alu -60 250 1 1320 176 18 116 chr11 9701107 9701309 -141082244 - AluJo SINE Alu -5 297 138 2182 89 3 0 chr11 9701309 9701591 -141081962 + AluSx SINE Alu 30 312 0 1320 176 18 116 chr11 9701591 9701717 -141081836 - AluJo SINE Alu -164 138 1 2004 205 45 2 chr11 9701755 9702175 -141081378 + L1ME2 LINE L1 5513 5950 -214 596 87 0 12 chr11 9702175 9702405 -141081148 + AluSx SINE Alu 1 296 -16 908 191 70 23 chr11 9702406 9702621 -141080932 + L1ME2 LINE L1 5940 6164 0 2372 76 0 13 chr11 9702885 9703189 -141080364 - AluSq SINE Alu -13 300 1 430 86 0 0 chr11 9703189 9703247 -141080306 - L1M LINE L1 -755 5423 5366 * 435 173 21 21 chr11 9703223 9703318 -141080235 - L1ME LINE L1 -589 5575 5481 763 217 50 75 chr11 9703352 9703871 -141079682 - L1ME LINE L1 -663 5501 5000 1367 213 167 35 chr11 9703944 9704399 -141079154 + L1MC4a LINE L1 5384 5898 -1910 1398 108 159 47 chr11 9704430 9704662 -141078891 + AluJb SINE Alu 1 258 -54 434 281 65 7 chr11 9704978 9705131 -141078422 - MIR SINE MIR -3 259 98 1710 184 0 16 chr11 9705605 9705921 -141077632 - AluJo SINE Alu 0 312 2 2401 89 0 16 chr11 9705936 9706251 -141077302 - AluY SINE Alu 0 311 2 2366 80 14 0 chr11 9706485 9706773 -141076780 - AluSp SINE Alu -21 292 1 328 204 0 25 chr11 9707432 9707655 -141075898 + AluJo SINE Alu 11 285 -17 1706 174 28 0 chr11 9707716 9708004 -141075549 - AluSx SINE Alu -14 298 3 2561 60 0 0 chr11 9709569 9709869 -141073684 + AluY SINE Alu 1 300 -11 2232 92 0 49 chr11 9709878 9710018 -141073535 + AluSp SINE Alu 1 146 -167 2378 82 3 22 chr11 9710018 9710334 -141073219 + AluY SINE Alu 1 310 -1 2232 92 0 49 chr11 9710334 9710520 -141073033 + AluSp SINE Alu 146 311 -2 25 31 0 0 chr11 9711135 9711167 -141072386 + AT_rich Low_complexity Low_complexity 1 32 0 2628 59 0 0 chr11 9711196 9711502 -141072051 + AluY SINE Alu 1 306 -5 748 85 85 0 chr11 9711661 9711779 -141071774 - L1MA7 LINE L1 -161 6130 6003 651 204 151 42 chr11 9713642 9713907 -141069646 - L1MC5 LINE L1 -50 7911 7618 974 211 43 100 chr11 9713926 9714386 -141069167 + L1MC4a LINE L1 6194 6627 -1181 195 129 0 0 chr11 9714790 9714821 -141068732 + (A)n Simple_repeat Simple_repeat 1 31 0 492 237 50 14 chr11 9715001 9715140 -141068413 + MER5B DNA MER1_type 35 178 0 2095 117 0 17 chr11 9715270 9715569 -141067984 - AluSx SINE Alu -13 299 6 2064 130 13 7 chr11 9715716 9716017 -141067536 - AluSx SINE Alu -9 303 1 1825 109 4 4 chr11 9716090 9716337 -141067216 + AluSx SINE Alu 45 291 -21 2341 95 0 3 chr11 9716344 9716639 -141066914 + AluSc SINE Alu 1 294 -15 2458 90 0 3 chr11 9716641 9716951 -141066602 + AluSc SINE Alu 1 309 0 21 57 0 0 chr11 9717000 9717035 -141066518 + AT_rich Low_complexity Low_complexity 1 35 0 4147 139 40 83 chr11 9717110 9717356 -141066197 + L1MB7 LINE L1 5148 5403 -781 2130 133 3 3 chr11 9717356 9717664 -141065889 + AluSg SINE Alu 1 308 -2 2176 104 0 36 chr11 9717664 9717973 -141065580 + AluSx SINE Alu 1 298 -14 4147 139 40 83 chr11 9717973 9718485 -141065068 + L1MB7 LINE L1 5402 5934 -250 2117 71 0 4 chr11 9718485 9718738 -141064815 + AluY SINE Alu 1 252 -59 4147 139 40 83 chr11 9718738 9718992 -141064561 + L1MB7 LINE L1 5934 6115 -69 2362 82 7 0 chr11 9718992 9719285 -141064268 - AluY SINE Alu -16 295 1 4147 139 40 83 chr11 9719285 9719343 -141064210 + L1MB7 LINE L1 6115 6174 -10 231 36 0 0 chr11 9719347 9719375 -141064178 + (A)n Simple_repeat Simple_repeat 1 28 0 2481 84 3 0 chr11 9719378 9719689 -141063864 + AluSp SINE Alu 1 312 -1 233 156 89 0 chr11 9720135 9720180 -141063373 + L2 LINE L2 3224 3272 0 1651 98 0 5 chr11 9720959 9721174 -141062379 + AluSg/x SINE Alu 83 296 -16 1794 171 0 13 chr11 9721364 9721663 -141061890 + AluJb SINE Alu 1 295 -17 1031 146 6 0 chr11 9721888 9722052 -141061501 - FAM SINE Alu -10 165 1 277 102 20 20 chr11 9722246 9722295 -141061258 + MIR3 SINE MIR 150 198 -10 245 264 19 0 chr11 9723176 9723229 -141060324 + MIR SINE MIR 48 101 -107 2662 50 0 0 chr11 9723481 9723783 -141059770 + AluY SINE Alu 1 302 -9 2139 120 3 3 chr11 9724081 9724380 -141059173 + AluSx SINE Alu 1 299 -13 2253 116 6 3 chr11 9724714 9725025 -141058528 + AluSx SINE Alu 1 312 0 431 274 65 6 chr11 9725636 9725804 -141057749 + MIR SINE MIR 16 193 -69 637 245 45 35 chr11 9725811 9726011 -141057542 - MIR SINE MIR -1 261 60 2248 79 14 0 chr11 9726151 9726450 -141057103 - AluSq SINE Alu 0 303 1 328 290 60 0 chr11 9726578 9726678 -141056875 - L2 LINE L2 -14 3258 3153 1508 164 11 35 chr11 9727001 9727288 -141056265 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr11 9727288 9727309 -141056244 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 2364 84 0 7 chr11 9728242 9728540 -141055013 + AluSc SINE Alu 1 296 -13 395 195 34 34 chr11 9728941 9729059 -141054494 + L1MB8 LINE L1 6031 6148 -30 1954 116 29 14 chr11 9729066 9729199 -141054354 + AluSq SINE Alu 2 132 -176 2093 133 0 7 chr11 9729199 9729507 -141054046 + AluSx SINE Alu 1 306 -6 1954 116 29 14 chr11 9729507 9729676 -141053877 + AluSq SINE Alu 132 308 0 1538 185 11 11 chr11 9729683 9729964 -141053589 + AluJb SINE Alu 1 281 -31 2296 75 3 10 chr11 9729964 9730258 -141053295 - AluY SINE Alu -18 293 1 673 207 7 22 chr11 9730374 9730509 -141053044 - FLAM_A SINE Alu 0 133 1 1789 178 3 3 chr11 9730581 9730868 -141052685 + AluJb SINE Alu 1 287 -25 1821 136 39 32 chr11 9731029 9731337 -141052216 + AluJo SINE Alu 3 312 0 343 207 82 52 chr11 9731350 9731408 -141052145 - L1ME4a LINE L1 -92 6029 5974 1717 160 23 39 chr11 9731408 9731715 -141051838 - AluJo SINE Alu -10 302 1 343 207 82 52 chr11 9731715 9731791 -141051762 - L1ME4a LINE L1 -147 5974 5891 24 0 0 0 chr11 9732829 9732853 -141050700 + AT_rich Low_complexity Low_complexity 1 24 0 895 211 0 0 chr11 9733356 9733512 -141050041 - AluSg/x SINE Alu -22 290 135 2278 86 10 3 chr11 9733957 9734258 -141049295 + AluY SINE Alu 1 303 -8 190 296 0 0 chr11 9734262 9734306 -141049247 + MIR SINE MIR 57 100 -108 2455 87 0 0 chr11 9734347 9734646 -141048907 + AluSq SINE Alu 1 299 -14 2341 105 0 0 chr11 9734647 9734951 -141048602 + AluY SINE Alu 1 304 -7 35 0 0 0 chr11 9735145 9735180 -141048373 + AT_rich Low_complexity Low_complexity 1 35 0 469 264 110 40 chr11 9735280 9735507 -141048046 - MIR SINE MIR -5 257 15 2051 126 38 0 chr11 9735873 9736166 -141047387 + AluSx SINE Alu 1 304 -8 2642 49 0 0 chr11 9736417 9736721 -141046832 + AluY SINE Alu 1 304 -7 959 173 0 63 chr11 9736724 9736915 -141046638 + AluSg/x SINE Alu 134 312 0 1806 142 0 65 chr11 9737006 9737331 -141046222 + AluSx SINE Alu 1 304 -8 2251 117 0 0 chr11 9737473 9737773 -141045780 + AluSc SINE Alu 1 300 -9 483 215 188 14 chr11 9737778 9737922 -141045631 + AluSg/x SINE Alu 135 303 -7 2150 124 7 3 chr11 9737926 9738232 -141045321 + AluSg SINE Alu 1 307 -3 1984 153 0 0 chr11 9738232 9738513 -141045040 + AluSx SINE Alu 6 286 -26 27 0 0 0 chr11 9738516 9738543 -141045010 + AT_rich Low_complexity Low_complexity 1 27 0 1386 100 116 4 chr11 9738546 9738796 -141044757 - MER33 DNA MER1_type -46 278 1 2420 68 0 0 chr11 9738949 9739242 -141044311 + AluY SINE Alu 1 293 -18 2479 71 0 0 chr11 9739249 9739545 -141044008 + AluY SINE Alu 1 296 -15 2295 112 7 0 chr11 9739617 9739913 -141043640 - AluSx SINE Alu -14 298 1 1646 179 15 4 chr11 9740137 9740410 -141043143 - AluJo SINE Alu -33 279 4 2424 93 7 3 chr11 9740606 9740916 -141042637 - AluSq SINE Alu -2 311 1 815 122 0 95 chr11 9742215 9742362 -141041191 + FLAM_C SINE Alu 1 133 0 450 119 0 30 chr11 9742746 9742813 -141040740 - AluJ/FLAM SINE Alu -242 70 6 451 304 47 0 chr11 9743214 9743362 -141040191 - MIR SINE MIR -14 248 94 2159 102 0 13 chr11 9743394 9743707 -141039846 + AluSg SINE Alu 1 309 -1 2219 97 3 7 chr11 9743973 9744263 -141039290 + AluSc SINE Alu 9 297 -12 686 35 0 76 chr11 9744263 9744408 -141039145 + (GGAA)n Simple_repeat Simple_repeat 1 134 0 34 42 0 0 chr11 9744435 9744483 -141039070 + AT_rich Low_complexity Low_complexity 1 48 0 2173 69 0 11 chr11 9744497 9744773 -141038780 + AluY SINE Alu 38 310 -1 2221 93 14 0 chr11 9744848 9745137 -141038416 + AluSx SINE Alu 1 293 -19 27 0 0 0 chr11 9745137 9745164 -141038389 + AT_rich Low_complexity Low_complexity 1 27 0 804 229 65 22 chr11 9745176 9745407 -141038146 - MIR SINE MIR 0 262 22 441 0 0 0 chr11 9745564 9745613 -141037940 + (CA)n Simple_repeat Simple_repeat 2 50 0 1969 122 14 37 chr11 9745621 9745917 -141037636 - AluSx SINE Alu -21 291 3 1347 211 26 68 chr11 9745947 9746255 -141037298 + AluJo SINE Alu 1 295 -7 1667 149 54 17 chr11 9746355 9746651 -141036902 + AluJo SINE Alu 1 307 -5 281 231 0 0 chr11 9746713 9746778 -141036775 - L3 LINE CR1 -175 1402 1338 2384 83 3 3 chr11 9748120 9748420 -141035133 - AluSp SINE Alu -13 300 1 25 31 0 0 chr11 9748590 9748622 -141034931 + AT_rich Low_complexity Low_complexity 1 32 0 2264 101 0 3 chr11 9748977 9749274 -141034279 + AluSg SINE Alu 1 296 -14 2024 158 3 0 chr11 9749300 9749611 -141033942 + AluJb SINE Alu 1 312 0 2238 100 3 17 chr11 9749676 9749976 -141033577 + AluSq SINE Alu 1 296 -17 1365 270 99 17 chr11 9750549 9751310 -141032243 + L2 LINE L2 2488 3313 0 1111 138 0 13 chr11 9751673 9751832 -141031721 + AluSx SINE Alu 1 157 -155 2202 105 0 32 chr11 9751989 9752303 -141031250 + AluSq SINE Alu 1 304 -9 2186 117 7 0 chr11 9752375 9752665 -141030888 - AluSx SINE Alu -18 294 3 724 171 85 0 chr11 9752688 9752817 -141030736 - FRAM SINE Alu -36 140 1 2090 122 10 7 chr11 9753652 9753948 -141029605 - AluSg SINE Alu -8 302 6 1959 139 10 7 chr11 9753987 9754281 -141029272 + AluSq SINE Alu 5 299 -14 2304 80 6 6 chr11 9754326 9754637 -141028916 + AluY SINE Alu 1 311 0 1484 171 6 70 chr11 9754778 9754924 -141028629 + AluJb SINE Alu 1 155 -168 2455 91 0 0 chr11 9754924 9755233 -141028320 + AluSq SINE Alu 2 310 -3 2130 111 35 0 chr11 9755236 9755524 -141028029 + AluSq SINE Alu 1 298 -15 1484 171 6 70 chr11 9755524 9755716 -141027837 + AluJb SINE Alu 157 323 0 22 35 0 0 chr11 9755741 9755770 -141027783 + AT_rich Low_complexity Low_complexity 1 29 0 1574 77 115 51 chr11 9755773 9756031 -141027522 + AluY SINE Alu 37 309 0 2396 92 3 0 chr11 9756037 9756342 -141027211 + AluSg SINE Alu 1 306 -4 2193 82 0 11 chr11 9756588 9756867 -141026686 - AluSg SINE Alu -20 290 15 225 0 0 0 chr11 9756897 9756922 -141026631 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2207 104 0 0 chr11 9756922 9757202 -141026351 - AluSx SINE Alu -32 280 1 1075 130 12 12 chr11 9757217 9757379 -141026174 + AluJb SINE Alu 129 290 -22 378 74 0 0 chr11 9757397 9757451 -141026102 + (CA)n Simple_repeat Simple_repeat 2 55 0 271 183 103 63 chr11 9757452 9757578 -141025975 + L1MC4a LINE L1 5781 5911 -1897 21 0 0 0 chr11 9757691 9757712 -141025841 + AT_rich Low_complexity Low_complexity 1 21 0 3369 196 86 10 chr11 9757822 9758633 -141024920 + L1MB5 LINE L1 5227 6106 -68 2407 76 0 3 chr11 9758640 9758931 -141024622 - AluSq SINE Alu -21 292 3 892 179 48 43 chr11 9758954 9759161 -141024392 - AluJo SINE Alu -17 295 88 358 104 30 30 chr11 9759163 9759230 -141024323 + L1MB8 LINE L1 6112 6178 0 2340 92 0 3 chr11 9761982 9762288 -141021265 - AluSg SINE Alu -5 305 1 1247 60 0 0 chr11 9762399 9762550 -141021003 + AluY SINE Alu 159 309 -2 306 71 24 48 chr11 9763337 9763421 -141020132 + (TA)n Simple_repeat Simple_repeat 1 82 0 2109 86 46 0 chr11 9763465 9763745 -141019808 + AluSg SINE Alu 1 293 -17 2085 143 3 13 chr11 9763745 9763881 -141019672 + AluSq SINE Alu 2 138 -165 2095 99 0 65 chr11 9763881 9764015 -141019538 + AluY SINE Alu 1 142 -169 2339 107 0 0 chr11 9764015 9764324 -141019229 + AluSx SINE Alu 1 309 -3 2095 99 0 65 chr11 9764324 9764511 -141019042 + AluY SINE Alu 142 301 -10 2085 143 3 13 chr11 9764511 9764675 -141018878 + AluSq SINE Alu 138 298 -5 2255 64 10 14 chr11 9764682 9765024 -141018529 + AluY SINE Alu 2 296 -15 3771 184 75 33 chr11 9765030 9765651 -141017902 - L1MB7 LINE L1 -5 6179 5586 2341 50 11 0 chr11 9765651 9765928 -141017625 - AluY SINE Alu -12 299 20 3771 184 75 33 chr11 9765928 9765968 -141017585 - L1MB7 LINE L1 -598 5586 5549 1698 153 32 7 chr11 9765968 9766249 -141017304 - AluSx SINE Alu -24 288 1 3771 184 75 33 chr11 9766249 9766538 -141017015 - L1MB7 LINE L1 -635 5549 5274 2126 132 0 16 chr11 9766538 9766670 -141016883 + AluSx SINE Alu 5 138 -174 2156 121 3 0 chr11 9766670 9766968 -141016585 + AluSx SINE Alu 1 299 -13 2126 132 0 16 chr11 9766968 9767137 -141016416 + AluSx SINE Alu 138 301 -11 2109 99 0 33 chr11 9767137 9767272 -141016281 + AluSc SINE Alu 1 139 -170 3771 184 75 33 chr11 9767138 9767272 -141016281 - L1MB7 LINE L1 -910 5274 5147 2427 89 3 0 chr11 9767272 9767576 -141015977 + AluSp SINE Alu 1 305 -8 3771 184 75 33 chr11 9767576 9767864 -141015689 - L1MB7 LINE L1 -1037 5147 5039 2109 99 0 33 chr11 9767576 9767742 -141015811 + AluSc SINE Alu 139 292 -17 1689 165 21 10 chr11 9767864 9768155 -141015398 - AluJb SINE Alu -18 294 1 3771 184 75 33 chr11 9768155 9768418 -141015135 - L1MB7 LINE L1 -1145 5039 4789 2034 120 0 24 chr11 9768419 9768641 -141014912 - AluSx SINE Alu 0 311 97 4750 170 71 48 chr11 9768641 9769688 -141013865 + MER11C LTR ERVK 1 1071 0 2034 120 0 24 chr11 9769688 9769783 -141013770 - AluSx SINE Alu -214 97 1 2028 214 133 24 chr11 9769834 9770111 -141013442 - L1MB7 LINE L1 -1446 4700 4455 2023 100 23 27 chr11 9770111 9770412 -141013141 - AluSc SINE Alu -9 300 1 2028 214 133 24 chr11 9770412 9770471 -141013082 - L1MB7 LINE L1 -1691 4455 4404 2096 105 17 7 chr11 9770471 9770766 -141012787 - AluSq SINE Alu -15 298 1 2028 214 133 24 chr11 9770766 9770819 -141012734 - L1MB7 LINE L1 -1742 4404 4358 1869 113 94 0 chr11 9770819 9771094 -141012459 - AluSx SINE Alu -11 301 1 2028 214 133 24 chr11 9771094 9771370 -141012183 - L1MB7 LINE L1 -1788 4358 3960 2221 117 0 0 chr11 9771419 9771719 -141011834 + AluSp SINE Alu 1 300 -13 2228 112 3 0 chr11 9771796 9772091 -141011462 - AluSx SINE Alu -16 296 1 840 156 8 0 chr11 9772099 9772221 -141011332 - FLAM_C SINE Alu -10 123 1 2165 120 3 0 chr11 9772277 9772577 -141010976 + AluSg SINE Alu 1 301 -9 248 355 40 0 chr11 9772688 9772812 -141010741 + MLT1J LTR MaLR 92 220 -291 21 0 0 0 chr11 9773421 9773442 -141010111 + AT_rich Low_complexity Low_complexity 1 21 0 1823 101 0 16 chr11 9776566 9776823 -141006730 - AluSx SINE Alu -11 301 49 298 191 15 29 chr11 9776823 9776891 -141006662 + AluSg SINE Alu 63 129 -171 304 233 11 40 chr11 9776942 9777118 -141006435 + C-rich Low_complexity Low_complexity 4 174 0 1462 106 5 10 chr11 9777361 9777559 -141005994 + AluSg/x SINE Alu 68 264 -46 37 0 0 0 chr11 9777571 9777608 -141005945 + AT_rich Low_complexity Low_complexity 1 37 0 2243 112 0 10 chr11 9777658 9777970 -141005583 - AluSx SINE Alu -3 309 1 1787 175 11 0 chr11 9778057 9778342 -141005211 - AluJb SINE Alu -24 288 1 2484 60 7 0 chr11 9778353 9778652 -141004901 - AluSp SINE Alu -12 301 1 1089 141 6 0 chr11 9778743 9778906 -141004647 - AluSp SINE Alu -14 299 136 1999 154 3 3 chr11 9778917 9779222 -141004331 - AluSx SINE Alu -7 305 1 2219 107 0 0 chr11 9779250 9779568 -141003985 + AluY SINE Alu 1 311 0 22 70 0 0 chr11 9779675 9779718 -141003835 + AT_rich Low_complexity Low_complexity 1 43 0 2302 87 10 13 chr11 9782091 9782400 -141001153 + AluSc SINE Alu 2 309 0 202 211 88 0 chr11 9782465 9782522 -141001031 - MIR SINE MIR -27 235 174 2253 113 0 10 chr11 9782547 9782858 -141000695 + AluSq SINE Alu 1 308 -5 649 188 0 0 chr11 9782860 9782961 -141000592 - FLAM_A SINE Alu -32 110 10 192 284 30 15 chr11 9783145 9783212 -141000341 - L2 LINE L2 -12 3301 3234 2226 105 0 7 chr11 9783324 9783618 -140999935 - AluSg SINE Alu -18 292 1 198 91 0 0 chr11 9783682 9783715 -140999838 + (CAT)n Simple_repeat Simple_repeat 3 35 0 2484 57 10 19 chr11 9784394 9784708 -140998845 + AluY SINE Alu 1 311 0 2086 125 3 6 chr11 9784761 9785074 -140998479 + AluSx SINE Alu 1 312 0 834 161 73 0 chr11 9785089 9785226 -140998327 + AluSg/x SINE Alu 130 276 -36 224 39 39 39 chr11 9785233 9785285 -140998268 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 24 0 0 0 chr11 9786277 9786301 -140997252 + AT_rich Low_complexity Low_complexity 1 24 0 1371 197 37 54 chr11 9787118 9787413 -140996140 - AluJo SINE Alu -12 290 1 2456 77 3 0 chr11 9787710 9788008 -140995545 + AluSp SINE Alu 1 299 -14 2388 76 13 3 chr11 9788646 9788948 -140994605 + AluSq SINE Alu 1 305 -8 2187 109 3 0 chr11 9789442 9789736 -140993817 + AluSx SINE Alu 6 300 -12 2326 97 0 3 chr11 9789938 9790246 -140993307 - AluSx SINE Alu -5 307 1 423 109 0 0 chr11 9790417 9790472 -140993081 + Alu SINE Alu 238 292 -17 621 172 62 0 chr11 9790510 9790638 -140992915 + L1MB3 LINE L1 6041 6176 -7 224 308 175 17 chr11 9791229 9791349 -140992204 + MIR SINE MIR 75 213 -49 202 296 217 9 chr11 9791514 9791629 -140991924 + MIR SINE MIR 12 150 -112 1123 152 173 12 chr11 9791724 9792011 -140991542 + MER1B DNA MER1_type 1 338 -1 28 0 0 0 chr11 9792406 9792434 -140991119 + AT_rich Low_complexity Low_complexity 1 28 0 1432 181 55 15 chr11 9792434 9792705 -140990848 - AluJo SINE Alu -30 282 1 833 115 0 0 chr11 9793798 9793911 -140989642 - AluSg/x SINE Alu -10 299 187 832 237 10 5 chr11 9794042 9794240 -140989313 + L1MD3 LINE L1 7719 7917 -78 2147 130 3 0 chr11 9794378 9794679 -140988874 + AluSx SINE Alu 1 302 -10 363 82 16 0 chr11 9794726 9794787 -140988766 + L1MB8 LINE L1 5268 5329 -817 1543 106 128 0 chr11 9794788 9795014 -140988539 + AluSq SINE Alu 1 255 -58 929 142 43 6 chr11 9795025 9795187 -140988366 + AluSg/x SINE Alu 138 305 -5 2300 192 143 14 chr11 9795204 9795862 -140987691 + L1MB8 LINE L1 5324 6135 -49 2139 99 13 35 chr11 9795865 9796041 -140987512 - AluSx SINE Alu -6 306 139 2417 76 0 13 chr11 9796041 9796343 -140987210 - AluY SINE Alu -12 299 2 2139 99 13 35 chr11 9796343 9796479 -140987074 - AluSx SINE Alu -173 139 1 811 165 0 15 chr11 9796481 9796614 -140986939 - FLAM_C SINE Alu -12 131 1 2097 116 7 3 chr11 9797183 9797477 -140986076 - AluSx SINE Alu -17 295 1 867 153 0 29 chr11 9799135 9799272 -140984281 - FLAM_C SINE Alu 0 133 1 545 211 57 171 chr11 9799424 9799640 -140983913 + Charlie1a DNA MER1_type 11 250 -2511 330 26 0 0 chr11 9799640 9799679 -140983874 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 545 211 57 171 chr11 9799679 9799695 -140983858 + Charlie1a DNA MER1_type 250 266 -2495 1899 98 4 0 chr11 9799695 9799940 -140983613 - AluSp SINE Alu -67 246 1 545 211 57 171 chr11 9799940 9799981 -140983572 + Charlie1a DNA MER1_type 266 252 -2509 2259 95 0 0 chr11 9799981 9800275 -140983278 - AluY SINE Alu -17 294 1 545 211 57 171 chr11 9800275 9800298 -140983255 + Charlie1a DNA MER1_type 251 275 -1180 2275 70 0 0 chr11 9800298 9800569 -140982984 - AluSg SINE Alu -18 292 22 510 232 18 0 chr11 9800572 9800677 -140982876 + Charlie1a DNA MER1_type 547 656 -2105 2047 101 4 11 chr11 9800677 9800953 -140982600 + AluSp SINE Alu 1 274 -39 598 217 145 6 chr11 9800960 9801126 -140982427 + Charlie1a DNA MER1_type 1264 1452 -3 1820 80 121 15 chr11 9801632 9801896 -140981657 - AluY SINE Alu -19 292 1 338 306 83 6 chr11 9802124 9802304 -140981249 + L1ME LINE L1 5625 5818 -303 216 0 0 0 chr11 9802350 9802374 -140981179 + (TA)n Simple_repeat Simple_repeat 2 25 0 2458 77 0 0 chr11 9802374 9802672 -140980881 - AluSc SINE Alu -11 298 1 1632 219 215 4 chr11 9802707 9803224 -140980329 + L1ME2 LINE L1 5502 6127 -37 2161 106 0 3 chr11 9803571 9803875 -140979678 + AluSg1 SINE Alu 1 303 0 2435 94 0 0 chr11 9803927 9804236 -140979317 + AluSq SINE Alu 1 309 -4 23 0 0 0 chr11 9804249 9804272 -140979281 + AT_rich Low_complexity Low_complexity 1 23 0 473 174 43 0 chr11 9804295 9804387 -140979166 + L1MB7 LINE L1 6080 6175 -9 676 248 44 60 chr11 9805031 9805346 -140978207 - L1M4 LINE L1 -2040 4106 3797 613 153 194 69 chr11 9805751 9805895 -140977658 - FRAM SINE Alu -4 162 1 2583 64 0 0 chr11 9806072 9806383 -140977170 - AluY SINE Alu 0 311 1 2131 113 0 13 chr11 9806602 9806904 -140976649 - AluSp SINE Alu -15 298 1 2173 70 11 0 chr11 9807109 9807382 -140976171 + AluSg SINE Alu 31 306 -4 440 259 133 14 chr11 9807969 9808112 -140975441 - MIR SINE MIR -102 160 1 292 225 28 14 chr11 9808345 9808416 -140975137 - MIR SINE MIR -114 148 77 39 22 0 0 chr11 9808470 9808516 -140975037 + AT_rich Low_complexity Low_complexity 1 46 0 478 114 29 0 chr11 9808727 9808797 -140974756 + AluS SINE Alu 225 296 -15 2368 52 42 0 chr11 9808820 9809109 -140974444 + AluY SINE Alu 1 301 -10 1788 138 10 52 chr11 9809158 9809463 -140974090 - AluJb SINE Alu -20 292 1 1216 218 45 8 chr11 10011947 10012213 -140771340 - AluJo SINE Alu -36 276 1 2450 53 3 17 chr11 10012244 10012545 -140771008 - AluY SINE Alu -14 297 1 1381 183 122 0 chr11 10012547 10012809 -140770744 - AluJo SINE Alu -7 295 2 646 93 131 19 chr11 10012920 10013027 -140770526 + MER21A LTR ERV1 15 133 -798 2088 123 0 3 chr11 10013027 10013311 -140770242 + AluSx SINE Alu 1 283 -29 495 227 7 27 chr11 10013407 10013557 -140769996 + MER39 LTR ERV1 219 365 -342 189 0 0 0 chr11 10013979 10014000 -140769553 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1328 154 33 9 chr11 10014014 10014228 -140769325 - AluJb SINE Alu -30 282 64 2291 89 3 3 chr11 10014228 10014520 -140769033 - AluSp SINE Alu -21 292 1 1914 124 4 0 chr11 10014759 10015018 -140768535 - AluSq SINE Alu -53 260 1 1785 170 3 14 chr11 10015215 10015509 -140768044 + AluJo SINE Alu 9 299 -13 534 98 0 0 chr11 10015529 10015611 -140767942 + (GGGA)n Simple_repeat Simple_repeat 1 82 0 200 224 15 0 chr11 10016270 10016337 -140767216 + CT-rich Low_complexity Low_complexity 1 68 0 237 277 128 69 chr11 10016585 10016773 -140766780 + MIR SINE MIR 37 235 -27 1823 163 3 3 chr11 10016792 10017098 -140766455 + AluJb SINE Alu 1 306 0 214 304 132 25 chr11 10017120 10017446 -140766107 + L2 LINE L2 1728 2088 -1226 3270 146 2 28 chr11 10017467 10018001 -140765552 + MER1A DNA MER1_type 1 520 -9 2348 93 30 0 chr11 10018128 10018430 -140765123 + AluSx SINE Alu 1 311 -1 671 254 98 23 chr11 10018822 10019086 -140764467 + L2 LINE L2 2915 3198 -115 493 49 0 0 chr11 10019185 10019246 -140764307 + AluY SINE Alu 2 62 -256 1315 109 0 6 chr11 10019246 10019420 -140764133 + AluSg/x SINE Alu 97 269 -43 626 170 0 0 chr11 10019423 10019517 -140764036 + AluSg/x SINE Alu 72 165 -145 314 327 19 19 chr11 10019911 10020018 -140763535 - MLT1B-int LTR MaLR -509 862 756 1704 147 25 39 chr11 10020039 10020325 -140763228 - AluJo SINE Alu -30 282 1 783 186 0 0 chr11 10020506 10020635 -140762918 - FLAM_C SINE Alu -4 129 1 673 183 8 0 chr11 10020970 10021096 -140762457 - FLAM_A SINE Alu -5 137 11 225 333 0 0 chr11 10021110 10021188 -140762365 - MLT1B-int LTR MaLR -961 410 333 457 111 0 0 chr11 10021190 10021253 -140762300 - MLT1B LTR MaLR 0 390 328 1779 165 0 20 chr11 10021555 10021852 -140761701 - AluJo SINE Alu -21 291 1 357 312 16 24 chr11 10022020 10022145 -140761408 - L2 LINE L2 -1 3271 3148 2091 133 0 13 chr11 10022857 10023194 -140760359 - AluSx SINE Alu 0 312 1 612 144 17 0 chr11 10023803 10023976 -140759577 + (TA)n Simple_repeat Simple_repeat 1 176 0 383 154 51 29 chr11 10023977 10024152 -140759401 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 31 0 0 0 chr11 10024152 10024183 -140759370 + AT_rich Low_complexity Low_complexity 1 31 0 198 103 23 58 chr11 10024183 10024270 -140759283 + (TATAA)n Simple_repeat Simple_repeat 2 85 0 373 192 92 67 chr11 10024273 10024393 -140759160 + L1MCa LINE L1 1952 2074 -4352 1604 174 30 33 chr11 10024518 10024817 -140758736 - AluJo SINE Alu -14 298 1 3229 157 33 117 chr11 10025084 10025848 -140757705 - MER21A LTR ERV1 -19 912 213 2436 84 3 0 chr11 10026800 10027110 -140756443 - AluSp SINE Alu 0 313 3 2334 106 0 0 chr11 10027111 10027412 -140756141 - AluSg1 SINE Alu -8 301 1 1997 150 0 0 chr11 10028286 10028572 -140754981 - AluJo SINE Alu -26 286 1 1664 164 27 14 chr11 10028757 10029050 -140754503 - AluJb SINE Alu -5 307 11 299 328 51 69 chr11 10029227 10029559 -140753994 - L2 LINE L2 -22 3250 2925 318 50 0 0 chr11 10030609 10030649 -140752904 + (CA)n Simple_repeat Simple_repeat 1 40 0 1958 132 16 13 chr11 10030784 10031087 -140752466 - AluSq SINE Alu -1 312 9 442 257 9 0 chr11 10031282 10031387 -140752166 - L2 LINE L2 -507 2807 2702 1017 147 0 85 chr11 10031424 10031601 -140751952 - AluJo SINE Alu -148 164 3 1355 144 5 0 chr11 10031621 10031822 -140751731 + AluSg/x SINE Alu 87 288 -24 342 98 0 0 chr11 10031823 10031874 -140751679 + (TG)n Simple_repeat Simple_repeat 1 51 0 445 295 58 31 chr11 10032017 10032342 -140751211 - L1MEd LINE L1 -4908 1211 878 488 290 141 19 chr11 10033178 10033440 -140750113 + L2 LINE L2 1832 2125 -1189 716 169 0 0 chr11 10033448 10033566 -140749987 + FLAM_C SINE Alu 7 124 -19 24 0 0 0 chr11 10033568 10033592 -140749961 + AT_rich Low_complexity Low_complexity 1 24 0 829 254 33 12 chr11 10033620 10033860 -140749693 + L2 LINE L2 2159 2403 -911 607 120 11 0 chr11 10034197 10034289 -140749264 - AluS SINE Alu -216 97 5 862 154 0 0 chr11 10034346 10034469 -140749084 + FLAM_C SINE Alu 3 125 -18 2293 219 70 10 chr11 10034524 10035035 -140748518 - MLT1F LTR MaLR 0 542 1 182 162 27 0 chr11 10035091 10035128 -140748425 + MIR SINE MIR 117 154 -108 216 111 0 0 chr11 10035143 10035179 -140748374 + (T)n Simple_repeat Simple_repeat 1 36 0 2209 105 7 3 chr11 10035744 10036040 -140747513 - AluSg SINE Alu -13 297 1 22 0 0 0 chr11 10036042 10036064 -140747489 + AT_rich Low_complexity Low_complexity 1 22 0 1127 288 65 47 chr11 10036177 10036900 -140746653 + MLT2F LTR ERVL 10 626 -2 1617 49 0 0 chr11 10036946 10037129 -140746424 + AluY SINE Alu 1 183 -128 2409 100 3 0 chr11 10037300 10037610 -140745943 + AluSx SINE Alu 1 311 -1 207 0 0 0 chr11 10037862 10037885 -140745668 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2308 81 0 3 chr11 10040536 10040819 -140742734 + AluSx SINE Alu 1 282 -30 1343 184 39 12 chr11 10041047 10041303 -140742250 + AluJo SINE Alu 1 263 -49 1570 108 0 5 chr11 10041404 10041616 -140741937 + AluSg/x SINE Alu 86 296 -14 21 36 0 0 chr11 10043350 10043378 -140740175 + AT_rich Low_complexity Low_complexity 1 28 0 1115 126 0 13 chr11 10043449 10043608 -140739945 + AluJo SINE Alu 125 281 -31 33 0 8 0 chr11 10043608 10043686 -140739867 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr11 10043815 10043848 -140739705 + AT_rich Low_complexity Low_complexity 1 33 0 1885 149 13 3 chr11 10044381 10044682 -140738871 + AluJb SINE Alu 1 304 -8 333 282 110 23 chr11 10045703 10045938 -140737615 - L1MC/D LINE L1 -456 5665 5504 280 344 0 0 chr11 10046453 10046546 -140737007 + MER5B DNA MER1_type 24 116 -62 1778 129 65 14 chr11 10046563 10046841 -140736712 - AluSx SINE Alu -12 300 9 2275 108 3 3 chr11 10046986 10047291 -140736262 + AluSg SINE Alu 2 306 -4 350 262 62 0 chr11 10047432 10047577 -140735976 + L1MC5 LINE L1 7311 7464 -497 272 237 113 41 chr11 10047610 10047707 -140735846 + L1MC4 LINE L1 7634 7737 -305 874 211 18 0 chr11 10047803 10047974 -140735579 + AluSg/x SINE Alu 115 288 -24 577 151 0 0 chr11 10048681 10048767 -140734786 - AluJ/FLAM SINE Alu -225 87 2 3956 171 4 19 chr11 10048867 10048897 -140734656 + L1M4 LINE L1 3239 3268 -2878 1702 167 14 3 chr11 10048897 10049191 -140734362 + AluJb SINE Alu 3 299 -13 3956 171 4 19 chr11 10049191 10049895 -140733658 + L1M4 LINE L1 3268 3962 -2184 300 247 74 39 chr11 10050302 10050533 -140733020 + L1MEc LINE L1 1428 1666 -4730 22 70 0 0 chr11 10050721 10050764 -140732789 + AT_rich Low_complexity Low_complexity 1 43 0 427 305 60 54 chr11 10050813 10051643 -140731910 + L1M4 LINE L1 4335 5169 -977 873 136 0 0 chr11 10051664 10051782 -140731771 + FLAM_C SINE Alu 1 118 -25 30 0 0 0 chr11 10051782 10051812 -140731741 + AT_rich Low_complexity Low_complexity 1 30 0 2156 125 3 0 chr11 10051943 10052247 -140731306 + AluSx SINE Alu 3 307 -5 2368 115 0 0 chr11 10052350 10052654 -140730899 + AluSx SINE Alu 1 304 -8 2168 123 0 3 chr11 10053065 10053358 -140730195 - AluSg SINE Alu -18 292 1 1285 127 0 11 chr11 10053369 10053558 -140729995 - AluSx SINE Alu -14 298 112 650 234 135 35 chr11 10053923 10054005 -140729548 - L2 LINE L2 -266 3047 2975 1697 193 0 16 chr11 10054005 10054316 -140729237 - AluJb SINE Alu -6 306 1 650 234 135 35 chr11 10054316 10054634 -140728919 - L2 LINE L2 -338 2975 2596 2210 110 3 0 chr11 10054693 10054993 -140728560 - AluSp SINE Alu -12 301 1 1036 76 15 0 chr11 10054993 10055124 -140728429 - AluSx SINE Alu -175 137 5 595 242 124 60 chr11 10055137 10055451 -140728102 - L2 LINE L2 -797 2517 2184 * 1995 235 113 32 chr11 10055449 10055957 -140727596 + L2 LINE L2 2247 2826 -487 2375 94 7 3 chr11 10055957 10056265 -140727288 + AluSc SINE Alu 1 309 0 1995 235 113 32 chr11 10056265 10056473 -140727080 + L2 LINE L2 2826 3016 -297 195 139 0 0 chr11 10056613 10056649 -140726904 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 2178 107 31 0 chr11 10056740 10057030 -140726523 + AluSx SINE Alu 1 299 -13 1755 180 27 3 chr11 10057889 10058189 -140725364 - AluJb SINE Alu -5 307 1 336 203 16 0 chr11 10058303 10058367 -140725186 + MER58 DNA MER1_type 2356 2420 0 510 280 56 36 chr11 10058670 10059021 -140724532 + L2 LINE L2 2889 3306 -7 977 311 107 28 chr11 10059212 10059884 -140723669 - L2 LINE L2 -1480 1834 1080 893 200 16 5 chr11 10059884 10060069 -140723484 + MER5A DNA MER1_type 1 187 -2 977 311 107 28 chr11 10060069 10060243 -140723310 - L2 LINE L2 -2234 1080 921 1715 221 21 18 chr11 10060250 10060630 -140722923 - MLT1E2 LTR MaLR 0 626 246 889 141 0 28 chr11 10060632 10060774 -140722779 - FLAM_C SINE Alu -5 138 1 1031 227 8 25 chr11 10060823 10061065 -140722488 - MLT1E2 LTR MaLR -388 238 1 387 293 64 16 chr11 10061136 10061324 -140722229 - L2 LINE L2 -2498 816 620 199 310 0 0 chr11 10061348 10061419 -140722134 + MER5A DNA MER1_type 36 106 -83 24 53 0 0 chr11 10061624 10061662 -140721891 + AT_rich Low_complexity Low_complexity 1 38 0 845 156 0 0 chr11 10061662 10061784 -140721769 - FLAM_C SINE Alu -16 127 6 4349 121 15 126 chr11 10061862 10063415 -140720138 + pTR5 LTR ERV1 741 2606 0 836 222 233 15 chr11 10063415 10063818 -140719735 + Charlie2b DNA MER1_type 176 666 -2116 811 208 49 70 chr11 10063908 10064075 -140719478 + Charlie2a DNA MER1_type 1528 1688 -1174 830 176 0 0 chr11 10064075 10064206 -140719347 + FLAM_C SINE Alu 3 133 0 811 208 49 70 chr11 10064206 10064322 -140719231 + Charlie2a DNA MER1_type 1688 1805 -1057 455 69 0 0 chr11 10064322 10064380 -140719173 - Alu SINE Alu -14 295 238 493 232 24 65 chr11 10064484 10064598 -140718955 + L2 LINE L2 2233 2339 -975 1507 177 10 20 chr11 10064598 10064892 -140718661 + AluJb SINE Alu 1 291 -21 493 232 24 65 chr11 10064892 10064945 -140718608 + L2 LINE L2 2339 2393 -921 2058 137 0 0 chr11 10064984 10065291 -140718262 - AluSx SINE Alu -5 307 1 1516 232 60 64 chr11 10065293 10065627 -140717926 + L2 LINE L2 2784 3116 -197 1436 179 32 21 chr11 10065627 10065912 -140717641 - AluJo SINE Alu -24 288 1 1516 232 60 64 chr11 10065912 10066108 -140717445 + L2 LINE L2 3116 3311 -2 488 172 0 50 chr11 10066543 10066642 -140716911 + FLAM SINE Alu 38 131 -12 22 0 0 0 chr11 10066642 10066664 -140716889 + AT_rich Low_complexity Low_complexity 1 22 0 2187 95 3 0 chr11 10066671 10066975 -140716578 + AluSp SINE Alu 1 305 -8 261 269 192 10 chr11 10067173 10067277 -140716276 - MLT1K LTR MaLR -355 233 111 240 266 203 28 chr11 10067733 10067876 -140715677 + L2 LINE L2 331 498 -2816 503 305 40 34 chr11 10067903 10068228 -140715325 + L2 LINE L2 603 929 -2385 509 386 92 16 chr11 10068846 10069356 -140714197 + L2 LINE L2 1831 2379 -935 2184 89 23 3 chr11 10069380 10069683 -140713870 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr11 10069809 10069837 -140713716 + AT_rich Low_complexity Low_complexity 1 28 0 2157 95 0 0 chr11 10070058 10070369 -140713184 + AluSx SINE Alu 1 311 0 1200 113 0 11 chr11 10070373 10070559 -140712994 + AluSg/x SINE Alu 127 310 0 2131 74 14 7 chr11 10071441 10071726 -140711827 + AluSq SINE Alu 1 287 -26 240 35 0 0 chr11 10071729 10071758 -140711795 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 317 173 0 0 chr11 10071896 10071948 -140711605 - Tigger2a DNA MER2_type -67 377 326 729 138 9 0 chr11 10071952 10072068 -140711485 + L1 LINE L1 4699 4815 -1331 1669 112 84 21 chr11 10072078 10072364 -140711189 - Tigger2a DNA MER2_type -130 304 1 4514 179 32 34 chr11 10072606 10074134 -140709419 - L1MB2 LINE L1 -1 6170 4640 1866 117 29 0 chr11 10074134 10074407 -140709146 - AluSq SINE Alu -31 282 2 4514 179 32 34 chr11 10074407 10074561 -140708992 - L1MB2 LINE L1 -1531 4640 4501 2337 93 3 0 chr11 10074561 10074872 -140708681 - AluSp SINE Alu -1 312 1 4514 179 32 34 chr11 10074872 10074976 -140708577 - L1MB2 LINE L1 -1670 4501 4398 593 194 0 9 chr11 10074995 10075103 -140708450 - FLAM_C SINE Alu -12 131 25 2146 162 25 10 chr11 10075114 10075521 -140708032 - L1MB2 LINE L1 -1735 4411 3999 2309 82 3 0 chr11 10075648 10075951 -140707602 - AluSg SINE Alu -6 304 1 190 250 0 0 chr11 10076469 10076509 -140707044 - MIR SINE MIR -64 198 159 370 282 117 28 chr11 10076913 10077126 -140706427 + L2 LINE L2 2829 3060 -212 342 0 0 0 chr11 10077503 10077541 -140706012 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 940 236 64 130 chr11 10077677 10077735 -140705818 - MLT1G LTR MaLR -7 583 523 2175 101 0 0 chr11 10077735 10078033 -140705520 - AluSg1 SINE Alu -11 298 1 940 236 64 130 chr11 10078033 10078537 -140705016 - MLT1G LTR MaLR -67 523 58 626 207 52 0 chr11 10078730 10078846 -140704707 - MER68 LTR ERV1 0 562 441 1735 150 11 0 chr11 10078846 10079120 -140704433 + AluSx SINE Alu 1 277 -35 363 23 0 0 chr11 10079151 10079195 -140704358 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1033 171 0 0 chr11 10079216 10079386 -140704167 - AluJo/FRAM SINE Alu -8 304 135 1504 193 24 0 chr11 10079387 10079683 -140703870 - AluJb SINE Alu -9 303 1 358 85 34 34 chr11 10079684 10079743 -140703810 - MER68 LTR ERV1 -503 59 1 2194 106 3 3 chr11 10079817 10080128 -140703425 + AluSx SINE Alu 1 311 -1 946 132 7 13 chr11 10080142 10080294 -140703259 + AluSq/x SINE Alu 1 151 -161 956 158 0 0 chr11 10080395 10080547 -140703006 + AluJb SINE Alu 157 308 -4 2097 86 7 13 chr11 10080898 10081199 -140702354 - AluSg SINE Alu -11 299 1 757 132 0 47 chr11 10081237 10081366 -140702187 - FRAM SINE Alu -22 154 32 203 313 31 21 chr11 10081392 10081488 -140702065 + L2 LINE L2 2988 3084 -188 993 285 115 26 chr11 10081672 10082177 -140701376 - MLT1K LTR MaLR -12 576 27 1610 131 7 53 chr11 10082280 10082562 -140700991 + AluJo SINE Alu 31 299 -13 2242 113 0 0 chr11 10083363 10083674 -140699879 - AluSx SINE Alu -1 311 1 1914 140 7 0 chr11 10084544 10084837 -140698716 - AluSx SINE Alu -13 299 5 464 289 134 30 chr11 10084837 10085038 -140698515 + MIR SINE MIR 30 251 -11 306 378 30 22 chr11 10085117 10085252 -140698301 - L3b LINE CR1 -108 1475 1340 2219 90 0 29 chr11 10085287 10085598 -140697955 + AluSx SINE Alu 1 302 -10 195 232 12 98 chr11 10085702 10085784 -140697769 - L2 LINE L2 -11 3261 3187 889 260 64 35 chr11 10086218 10086530 -140697023 + MER102b DNA MER1_type 21 341 0 2130 103 0 0 chr11 10086782 10087072 -140696481 - AluSx SINE Alu -22 290 1 2011 128 27 0 chr11 10087236 10087533 -140696020 - AluSx SINE Alu -7 305 1 256 200 0 18 chr11 10087592 10087647 -140695906 - MLT1L LTR MaLR -16 599 546 1072 169 0 76 chr11 10087647 10087883 -140695670 - AluJb SINE Alu -9 303 86 302 146 0 0 chr11 10087883 10087931 -140695622 - MLT1L LTR MaLR -65 550 503 608 213 47 0 chr11 10088112 10088239 -140695314 - MLT1L LTR MaLR -341 274 142 1388 154 33 18 chr11 10088699 10088972 -140694581 - L1MB8 LINE L1 -2 6176 5900 1473 87 0 0 chr11 10089084 10089280 -140694273 + AluSg/x SINE Alu 117 312 0 225 178 0 0 chr11 10089453 10089498 -140694055 + T-rich Low_complexity Low_complexity 1 45 0 342 283 10 10 chr11 10090024 10090123 -140693430 - MIR3 SINE MIR -10 198 100 2460 50 3 0 chr11 10090173 10090471 -140693082 - AluSp SINE Alu -14 299 1 181 143 232 18 chr11 10092463 10092519 -140691034 - MIR3 SINE MIR -5 203 136 1417 238 88 7 chr11 10092532 10092939 -140690614 - L1ME1 LINE L1 -19 6147 5708 1529 213 47 14 chr11 10092939 10093206 -140690347 - L1MDa LINE L1 -3847 2693 2436 1959 145 0 0 chr11 10093206 10093509 -140690044 - AluSx SINE Alu -9 303 1 1529 213 47 14 chr11 10093509 10093831 -140689722 - L1MDa LINE L1 -4104 2436 2082 2080 121 0 0 chr11 10093848 10094146 -140689407 - AluSg SINE Alu -12 298 1 736 172 0 8 chr11 10094158 10094280 -140689273 - AluSq/x SINE Alu -184 129 9 193 292 97 0 chr11 10094292 10094364 -140689189 - MIR SINE MIR -103 105 27 216 0 0 0 chr11 10094373 10094397 -140689156 + (GA)n Simple_repeat Simple_repeat 1 24 0 1381 188 7 7 chr11 10094397 10094673 -140688880 - AluJb SINE Alu -34 278 3 1626 181 14 0 chr11 10094687 10094980 -140688573 - AluJb SINE Alu -11 301 5 2180 112 0 0 chr11 10095016 10095312 -140688241 - AluSx SINE Alu -16 296 1 204 207 35 52 chr11 10095695 10095753 -140687800 - L2 LINE L2 0 3272 3216 1761 130 67 0 chr11 10096383 10096653 -140686900 - AluSx SINE Alu -24 288 1 1043 140 0 0 chr11 10096970 10097120 -140686433 + AluSq/x SINE Alu 2 151 -161 404 170 53 23 chr11 10097221 10097318 -140686235 - AluSc SINE Alu -91 208 119 982 238 114 65 chr11 10097353 10097450 -140686103 - L1MC4a LINE L1 -1944 5864 5773 2028 105 23 10 chr11 10097450 10097755 -140685798 + AluSg SINE Alu 1 309 -1 982 238 114 65 chr11 10097755 10097946 -140685607 - L1MC4a LINE L1 -2035 5773 5593 306 0 0 0 chr11 10097946 10097980 -140685573 + (CA)n Simple_repeat Simple_repeat 2 35 0 982 238 114 65 chr11 10097980 10098136 -140685417 - L1MC4a LINE L1 -2215 5593 5397 1877 86 4 0 chr11 10099044 10099336 -140684217 + AluSg SINE Alu 37 329 0 559 192 0 0 chr11 10100086 10100185 -140683368 - U13 snRNA snRNA -2 102 4 227 261 11 57 chr11 10101912 10102000 -140681553 - L3 LINE CR1 -852 725 642 36 53 0 0 chr11 10103643 10103700 -140679853 + GC_rich Low_complexity Low_complexity 1 57 0 24 67 0 0 chr11 10103777 10103822 -140679731 + GC_rich Low_complexity Low_complexity 1 45 0 35 78 0 0 chr11 10104020 10104097 -140679456 + GC_rich Low_complexity Low_complexity 1 77 0 237 65 0 0 chr11 10104152 10104183 -140679370 + (TCC)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr11 10104228 10104259 -140679294 + GC_rich Low_complexity Low_complexity 1 31 0 33 0 0 0 chr11 10104753 10104786 -140678767 + GC_rich Low_complexity Low_complexity 1 33 0 2138 98 3 22 chr11 10105509 10105825 -140677728 - AluSx SINE Alu -2 310 1 311 282 264 17 chr11 10105827 10105880 -140677673 - L1ME LINE L1 -386 5735 5696 1817 92 32 51 chr11 10105880 10106194 -140677359 - AluSx SINE Alu -4 308 1 311 282 264 17 chr11 10106194 10106314 -140677239 - L1ME LINE L1 -425 5696 5519 1576 179 41 0 chr11 10106859 10107150 -140676403 - AluSx SINE Alu -4 308 6 24 53 0 0 chr11 10107164 10107202 -140676351 + AT_rich Low_complexity Low_complexity 1 38 0 184 303 106 0 chr11 10107258 10107324 -140676229 - L3 LINE CR1 -1261 316 244 * 396 277 91 22 chr11 10107290 10107473 -140676080 - MIR SINE MIR -60 202 3 485 277 92 8 chr11 10109306 10109454 -140674099 - MIR3 SINE MIR -36 172 30 233 278 144 0 chr11 10110365 10110455 -140673098 + L1ME4a LINE L1 5353 5455 -2353 445 184 10 78 chr11 10110534 10110637 -140672916 - MER20 DNA MER1_type -5 214 119 322 276 71 63 chr11 10110640 10110806 -140672747 + L1ME4a LINE L1 5724 5895 -226 1610 153 44 0 chr11 10110806 10111119 -140672434 + AluJb SINE Alu 1 325 0 322 276 71 63 chr11 10111119 10111190 -140672363 + L1ME4a LINE L1 5895 5964 -157 36 23 0 0 chr11 10111382 10111425 -140672128 + AT_rich Low_complexity Low_complexity 1 43 0 1747 185 14 71 chr11 10111440 10111521 -140672032 + MLT1A1 LTR MaLR 1 85 -280 2030 94 0 30 chr11 10111521 10111818 -140671735 + AluSc SINE Alu 2 289 -20 1747 185 14 71 chr11 10111818 10112103 -140671450 + MLT1A1 LTR MaLR 85 346 -19 555 128 12 0 chr11 10112255 10112341 -140671212 + AluSg/x SINE Alu 212 298 -11 1881 172 7 0 chr11 10113075 10113366 -140670187 + AluJo SINE Alu 1 293 -19 31 0 0 0 chr11 10113420 10113451 -140670102 + AT_rich Low_complexity Low_complexity 1 31 0 233 304 108 39 chr11 10113669 10113771 -140669782 + LTR16B LTR ERVL 119 227 -237 1832 147 6 55 chr11 10114011 10114337 -140669216 - AluJb SINE Alu -2 310 1 1987 144 7 3 chr11 10114643 10114949 -140668604 + AluSx SINE Alu 1 307 -5 28 61 0 0 chr11 10114982 10115031 -140668522 + AT_rich Low_complexity Low_complexity 1 49 0 423 214 151 31 chr11 10115550 10115709 -140667844 - MIR3 SINE MIR -25 183 6 386 286 26 94 chr11 10115796 10115988 -140667565 + L2 LINE L2 3021 3199 -73 936 115 0 183 chr11 10116458 10116693 -140666860 - 7SK RNA RNA 0 193 2 872 211 100 21 chr11 10116779 10116921 -140666632 - MER33 DNA MER1_type -2273 312 183 2086 117 0 0 chr11 10116921 10117202 -140666351 + AluSq SINE Alu 19 299 -14 872 211 100 21 chr11 10117202 10117348 -140666205 - MER33 DNA MER1_type -2402 183 1 2187 106 0 3 chr11 10117650 10117972 -140665581 + AluY SINE Alu 1 321 0 189 0 0 0 chr11 10119055 10119076 -140664477 + (A)n Simple_repeat Simple_repeat 1 21 0 313 101 0 117 chr11 10119296 10119373 -140664180 + Alu SINE Alu 1 47 -256 947 195 5 70 chr11 10120536 10120751 -140662802 - AluJo SINE Alu -27 285 85 1495 205 10 27 chr11 10120752 10121049 -140662504 - AluJo SINE Alu -15 297 6 195 340 0 0 chr11 10121056 10121103 -140662450 + MIR SINE MIR 46 92 -170 2277 113 2 59 chr11 10121128 10121156 -140662397 - Tigger2a DNA MER2_type -2316 392 364 1387 155 143 19 chr11 10121156 10121414 -140662139 - AluSg SINE Alu -20 290 1 2277 113 2 59 chr11 10121414 10121794 -140661759 - Tigger2a DNA MER2_type -2344 364 7 309 296 144 8 chr11 10121795 10121920 -140661633 + MIR SINE MIR 103 244 -18 192 40 0 0 chr11 10121959 10121984 -140661569 + (CTG)n Simple_repeat Simple_repeat 2 26 0 30 27 0 0 chr11 10122278 10122315 -140661238 + AT_rich Low_complexity Low_complexity 1 37 0 1597 187 3 47 chr11 10122315 10122615 -140660938 - AluJb SINE Alu -25 287 1 311 318 99 26 chr11 10123046 10123197 -140660356 + MIR3 SINE MIR 20 181 -27 198 0 0 0 chr11 10123615 10123637 -140659916 + (TA)n Simple_repeat Simple_repeat 2 23 0 403 225 181 0 chr11 10123798 10123958 -140659595 - L1MC4a LINE L1 -1860 5948 5760 24 32 0 0 chr11 10124132 10124163 -140659390 + AT_rich Low_complexity Low_complexity 1 31 0 287 246 43 14 chr11 10125023 10125092 -140658461 - MIR3 SINE MIR -51 157 87 195 324 14 28 chr11 10125277 10125348 -140658205 + L2 LINE L2 3239 3308 -5 6258 51 14 14 chr11 10125979 10126406 -140657147 + L1PA8A LINE L1 5254 5683 -448 2151 120 0 17 chr11 10126406 10126707 -140656846 + AluSq SINE Alu 3 298 -15 6258 51 14 14 chr11 10126707 10127128 -140656425 + L1PA8A LINE L1 5682 6102 -29 198 91 0 0 chr11 10127129 10127162 -140656391 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 1161 142 25 15 chr11 10127205 10127409 -140656144 - AluJb SINE Alu -22 290 85 21 0 0 0 chr11 10127705 10127726 -140655827 + AT_rich Low_complexity Low_complexity 1 21 0 234 174 0 0 chr11 10127889 10127935 -140655618 + (CA)n Simple_repeat Simple_repeat 2 47 0 759 199 23 0 chr11 10128327 10128458 -140655095 + AluJo SINE Alu 1 134 -178 30 27 0 0 chr11 10128541 10128578 -140654975 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr11 10128618 10128639 -140654914 + AT_rich Low_complexity Low_complexity 1 21 0 2094 120 29 13 chr11 10128672 10128980 -140654573 - AluSq SINE Alu 0 313 1 1676 189 0 17 chr11 10129182 10129483 -140654070 - AluJo SINE Alu -16 296 1 2121 137 0 0 chr11 10129491 10129798 -140653755 - AluSx SINE Alu -5 307 1 1932 147 0 23 chr11 10129802 10130102 -140653451 - AluSx SINE Alu -19 293 1 1015 142 73 0 chr11 10130183 10130387 -140653166 - L1MA8 LINE L1 -3 6288 6070 1378 163 38 0 chr11 10130461 10130725 -140652828 + L1MB7 LINE L1 5895 6168 -16 1681 163 4 8 chr11 10130970 10131221 -140652332 + AluJo SINE Alu 1 250 -62 324 316 175 12 chr11 10131912 10132083 -140651470 - MIR SINE MIR -58 204 6 288 102 20 0 chr11 10132569 10132618 -140650935 - AluSp/q SINE Alu -7 296 247 1742 165 16 44 chr11 10133103 10133419 -140650134 - AluJb SINE Alu -5 307 1 1931 160 51 33 chr11 10133609 10134059 -140649494 - L1MB7 LINE L1 0 6184 5727 701 324 53 83 chr11 10134063 10134474 -140649079 + L2 LINE L2 2874 3272 0 458 224 0 0 chr11 10134707 10134814 -140648739 - L1MB7 LINE L1 -19 6165 6059 1898 139 13 17 chr11 10135068 10135391 -140648162 - AluSx SINE Alu 0 312 1 181 280 140 47 chr11 10135449 10135556 -140647997 + L2 LINE L2 3183 3299 -14 22 56 0 0 chr11 10136478 10136514 -140647039 + AT_rich Low_complexity Low_complexity 1 36 0 255 203 47 0 chr11 10136742 10136806 -140646747 - L1MB7 LINE L1 -237 5941 5875 1723 168 28 31 chr11 10137227 10137606 -140645947 - L1MB1 LINE L1 -9 6159 5780 2290 119 0 0 chr11 10137606 10137918 -140645635 - AluSx SINE Alu 0 312 1 1723 168 28 31 chr11 10137918 10137930 -140645623 - L1MB1 LINE L1 -388 5780 5769 698 139 8 23 chr11 10137949 10138078 -140645475 - L1PB2 LINE L1 0 6151 6025 2714 141 4 6 chr11 10138079 10138563 -140644990 - L1MB1 LINE L1 -388 5780 5298 192 40 0 0 chr11 10138791 10138816 -140644737 + (CTG)n Simple_repeat Simple_repeat 2 26 0 1642 168 3 52 chr11 10139115 10139443 -140644110 - AluJo SINE Alu 0 312 1 313 117 39 0 chr11 10139454 10139531 -140644022 + (TTTA)n Simple_repeat Simple_repeat 1 80 0 23 0 0 0 chr11 10139538 10139561 -140643992 + AT_rich Low_complexity Low_complexity 1 23 0 670 205 0 0 chr11 10139561 10139673 -140643880 - FLAM_C SINE Alu -25 118 7 198 91 0 0 chr11 10139851 10139884 -140643669 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 328 238 95 106 chr11 10139884 10140073 -140643480 + LTR67 LTR ERVL 32 218 -339 318 219 15 133 chr11 10140132 10140328 -140643225 + LTR67 LTR ERVL 363 535 -22 362 347 55 36 chr11 10140370 10140589 -140642964 + L2 LINE L2 2869 3091 -181 207 383 74 0 chr11 10140795 10140876 -140642677 + L2 LINE L2 3125 3211 -61 581 178 0 0 chr11 10140897 10140987 -140642566 + FLAM_C SINE Alu 29 118 -25 29 60 0 0 chr11 10140987 10141037 -140642516 + AT_rich Low_complexity Low_complexity 1 50 0 1744 88 161 4 chr11 10141193 10141454 -140642099 - AluSx SINE Alu 0 302 1 437 262 117 0 chr11 10142758 10142903 -140640650 + MIR SINE MIR 86 247 -15 430 299 7 0 chr11 10142916 10143060 -140640493 - L1MB7 LINE L1 -426 5695 5551 1064 137 37 0 chr11 10143265 10143426 -140640127 - AluSq SINE Alu -8 305 139 1825 153 13 32 chr11 10143428 10143736 -140639817 - AluJb SINE Alu -10 302 1 513 283 127 67 chr11 10143738 10143947 -140639606 - LTR67 LTR ERVL -60 497 302 2348 102 76 15 chr11 10143947 10144290 -140639263 - THE1B LTR MaLR 0 364 1 513 283 127 67 chr11 10144290 10144546 -140639007 - LTR67 LTR ERVL -255 302 4 928 245 69 4 chr11 10144859 10145092 -140638461 + MIR SINE MIR 1 248 -14 599 334 63 12 chr11 10145259 10145591 -140637962 - L2 LINE L2 -1108 2206 1858 1778 135 0 80 chr11 10145809 10146135 -140637418 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr11 10147063 10147085 -140636468 + AT_rich Low_complexity Low_complexity 1 22 0 1832 147 45 0 chr11 10147282 10147568 -140635985 + AluJb SINE Alu 1 299 -13 1402 154 123 11 chr11 10147580 10147840 -140635713 + AluSg SINE Alu 1 289 -21 1055 114 81 0 chr11 10147856 10148005 -140635548 + AluSg/x SINE Alu 132 292 -18 21 0 0 0 chr11 10148388 10148409 -140635144 + AT_rich Low_complexity Low_complexity 1 21 0 258 302 12 36 chr11 10149237 10149270 -140634283 + T-rich Low_complexity Low_complexity 4 36 -206 2222 119 0 0 chr11 10149270 10149572 -140633981 - AluSx SINE Alu -9 303 2 258 302 12 36 chr11 10149572 10149700 -140633853 + T-rich Low_complexity Low_complexity 36 242 0 1734 194 16 10 chr11 10149915 10150225 -140633328 - AluJo SINE Alu 0 312 1 460 266 94 0 chr11 10150568 10150696 -140632857 - MIR SINE MIR -6 256 117 403 266 165 19 chr11 10150910 10151068 -140632485 - MER5A DNA MER1_type 0 189 9 735 211 108 5 chr11 10151223 10151417 -140632136 + MER58C DNA MER1_type 2 215 0 279 274 142 25 chr11 10151457 10151661 -140631892 - L2 LINE L2 -464 2850 2623 270 190 138 0 chr11 10151863 10151921 -140631632 + MER112 DNA MER1_type 178 243 -17 186 303 40 50 chr11 10152021 10152120 -140631433 - L2 LINE L2 -887 2427 2330 2057 129 10 10 chr11 10152221 10152531 -140631022 - AluSx SINE Alu -2 310 1 1821 121 86 0 chr11 10153455 10153735 -140629818 - AluSx SINE Alu -8 304 1 22 0 0 0 chr11 10153837 10153859 -140629694 + AT_rich Low_complexity Low_complexity 1 22 0 720 151 8 0 chr11 10153859 10153978 -140629575 + AluSq/x SINE Alu 1 120 -193 360 0 0 0 chr11 10153989 10154029 -140629524 + (TA)n Simple_repeat Simple_repeat 2 41 0 2204 120 0 3 chr11 10154029 10154329 -140629224 - AluSc SINE Alu -10 299 1 289 228 65 16 chr11 10154492 10154615 -140628938 + L1ME4a LINE L1 5989 6117 -4 7698 61 10 6 chr11 10154846 10156206 -140627347 - L1P2 LINE L1 -529 5625 4264 625 183 7 10 chr11 10156316 10156451 -140627102 - LTR27 LTR ERV1 -213 423 299 926 147 11 17 chr11 10156518 10156695 -140626858 - LTR28 LTR ERV1 -844 176 1 202 354 0 0 chr11 10156719 10156784 -140626769 - L2 LINE L2 -940 2374 2310 581 306 83 20 chr11 10156799 10156876 -140626677 + L2 LINE L2 2084 2155 -1159 2218 158 85 5 chr11 10156876 10157263 -140626290 + MER47B DNA MER2_type 1 418 0 581 306 83 20 chr11 10157263 10157437 -140626116 + L2 LINE L2 2155 2351 -963 1620 119 0 4 chr11 10157767 10157994 -140625559 - AluSc SINE Alu -83 226 1 346 204 64 14 chr11 10158142 10158296 -140625257 + L1ME4a LINE L1 1196 6118 0 2142 97 14 10 chr11 10159247 10159535 -140624018 + AluSg SINE Alu 1 289 -21 892 123 0 0 chr11 10159535 10159652 -140623901 - AluJo/FLAM SINE Alu -183 129 13 679 206 85 11 chr11 10159730 10159919 -140623634 - L1MC5 LINE L1 -68 7893 7691 21 82 0 0 chr11 10161416 10161465 -140622088 + AT_rich Low_complexity Low_complexity 1 49 0 2091 107 24 7 chr11 10161651 10161942 -140621611 - AluSg SINE Alu -14 296 1 1188 142 9 0 chr11 10162162 10162373 -140621180 - L1PA16 LINE L1 -153 6013 5801 300 207 187 20 chr11 10162534 10162684 -140620869 + MIR SINE MIR 14 188 -74 318 277 0 0 chr11 10162729 10162812 -140620741 + L1MC/D LINE L1 5725 5807 -2001 25 0 0 0 chr11 10163220 10163245 -140620308 + AT_rich Low_complexity Low_complexity 1 25 0 366 210 59 183 chr11 10163483 10163702 -140619851 - MIR3 SINE MIR -13 195 4 28 0 0 0 chr11 10165065 10165093 -140618460 + AT_rich Low_complexity Low_complexity 1 28 0 1231 119 0 97 chr11 10165195 10165422 -140618131 - MER46A DNA MER2_type 0 236 32 773 162 14 0 chr11 10165440 10165588 -140617965 - L1MD3 LINE L1 -1999 5996 5847 1533 161 61 7 chr11 10165884 10166163 -140617390 - AluJo SINE Alu -18 294 1 23 101 0 0 chr11 10166263 10166342 -140617211 + AT_rich Low_complexity Low_complexity 1 79 0 1091 253 30 33 chr11 10166429 10166796 -140616757 - L1MC4a LINE L1 -1833 5975 5610 4065 183 51 20 chr11 10166955 10168171 -140615382 - L1M4c LINE L1 -4831 2024 872 654 119 50 10 chr11 10168177 10168278 -140615275 + FLAM_C SINE Alu 9 113 -30 287 193 0 0 chr11 10168308 10168365 -140615188 - L1M4c LINE L1 -5978 881 825 * 1746 216 48 20 chr11 10168364 10168763 -140614790 - L1M4c LINE L1 -6439 420 11 2159 90 0 0 chr11 10168854 10169156 -140614397 + AluSc SINE Alu 1 302 0 298 297 143 0 chr11 10169707 10169798 -140613755 - L2 LINE L2 -1 3271 3168 1739 135 50 30 chr11 10169823 10170120 -140613433 + AluJo SINE Alu 1 303 -9 551 211 92 0 chr11 10170149 10170258 -140613295 - MER94 DNA DNA 0 134 16 25 75 0 0 chr11 10172530 10172583 -140610970 + AT_rich Low_complexity Low_complexity 1 53 0 188 198 62 123 chr11 10173009 10173090 -140610463 - MER5A DNA MER1_type 0 189 114 934 185 121 24 chr11 10173094 10173343 -140610210 + AluSg SINE Alu 35 307 -3 28 48 0 0 chr11 10173493 10173535 -140610018 + AT_rich Low_complexity Low_complexity 1 42 0 1970 110 10 14 chr11 10173583 10173874 -140609679 - AluSc SINE Alu -19 290 1 7580 25 0 0 chr11 10174141 10175014 -140608539 - L1PA3 LINE L1 -3 6152 5280 328 264 365 6 chr11 10175302 10175469 -140608084 + MIR SINE MIR 16 242 -20 585 254 258 10 chr11 10175492 10175787 -140607766 + L3 LINE CR1 685 1052 -525 407 279 39 16 chr11 10175796 10175925 -140607628 - MIR SINE MIR -21 241 110 501 293 86 82 chr11 10175946 10176495 -140607058 - LTR67 LTR ERVL -4 553 3 289 279 89 0 chr11 10176543 10176622 -140606931 + L2 LINE L2 3228 3313 0 948 269 142 24 chr11 10176624 10177047 -140606506 + L3 LINE CR1 1042 1514 -63 317 251 280 23 chr11 10177298 10177473 -140606080 + MIR SINE MIR 30 249 -13 631 279 71 5 chr11 10177588 10177785 -140605768 + MIR SINE MIR 53 262 0 191 303 61 15 chr11 10177857 10177923 -140605630 + MIR3 SINE MIR 109 177 -31 815 207 52 123 chr11 10178374 10178683 -140604870 - LTR41 LTR ERVL -17 756 470 659 186 124 12 chr11 10178770 10178931 -140604622 - LTR41 LTR ERVL -594 179 1 754 204 137 31 chr11 10178964 10179190 -140604363 + MIR SINE MIR 11 260 -2 2312 73 0 19 chr11 10179377 10179694 -140603859 - AluY SINE Alu 0 311 1 2119 84 0 11 chr11 10180240 10180554 -140602999 + AluSx SINE Alu 1 311 0 21 36 0 0 chr11 10183067 10183095 -140600458 + AT_rich Low_complexity Low_complexity 1 28 0 2053 47 0 4 chr11 10183635 10183891 -140599662 + AluY SINE Alu 47 301 -10 1352 133 38 0 chr11 10183908 10184119 -140599434 + MER20 DNA MER1_type 1 219 0 1391 227 174 10 chr11 10184788 10185272 -140598281 + L1ME3 LINE L1 5580 6142 -20 1823 118 35 0 chr11 10185312 10185600 -140597953 - AluSx SINE Alu -14 298 1 207 286 91 13 chr11 10186703 10186780 -140596773 + MIR SINE MIR 20 102 -160 282 93 0 0 chr11 10188026 10188069 -140595484 + MADE1 DNA Mariner 38 80 0 351 241 120 8 chr11 10188659 10188792 -140594761 - MIR SINE MIR -68 194 47 250 132 0 57 chr11 10190257 10190310 -140593243 + L2 LINE L2 3223 3272 0 427 358 53 24 chr11 10190910 10191156 -140592397 + L2 LINE L2 2578 2830 -484 296 266 22 43 chr11 10191179 10191305 -140592248 + (TGGA)n Simple_repeat Simple_repeat 1 123 -57 2261 97 10 0 chr11 10191305 10191613 -140591940 + AluSq SINE Alu 1 311 -2 296 266 22 43 chr11 10191613 10191670 -140591883 + (TGGA)n Simple_repeat Simple_repeat 123 180 0 1931 240 48 26 chr11 10191961 10192771 -140590782 - L2 LINE L2 0 3313 2482 264 219 25 50 chr11 10193199 10193318 -140590235 + (TA)n Simple_repeat Simple_repeat 1 116 0 915 221 13 24 chr11 10193620 10193843 -140589710 + MLT1A1 LTR MaLR 173 365 0 909 239 6 0 chr11 10193970 10194137 -140589416 - MER5A DNA MER1_type -21 168 1 1382 323 113 23 chr11 10194609 10195603 -140587950 + L2 LINE L2 1606 2688 -626 205 219 62 16 chr11 10196158 10196222 -140587331 - MIR3 SINE MIR -33 175 109 412 264 33 30 chr11 10196667 10196813 -140586740 + MIR SINE MIR 1 149 -59 236 258 18 126 chr11 10197293 10197460 -140586093 + L2 LINE L2 2966 3114 -158 2942 67 14 3 chr11 10197898 10198269 -140585284 + THE1C LTR MaLR 1 375 0 2110 147 68 66 chr11 10198622 10199120 -140584433 - MLT1D LTR MaLR -2 503 5 239 259 36 9 chr11 10199255 10199367 -140584186 + LTR16B LTR ERVL 291 405 -59 940 284 46 18 chr11 10199374 10199656 -140583897 + ERVL LTR ERVL 1739 2028 -2968 840 314 20 4 chr11 10199696 10199951 -140583602 + ERVL LTR ERVL 4254 4512 -1252 303 311 42 36 chr11 10199976 10200169 -140583384 + ERVL LTR ERVL 4935 5128 -636 351 308 23 0 chr11 10200281 10200414 -140583139 + ERVL LTR ERVL 5191 5326 -328 2203 218 78 53 chr11 10200559 10200609 -140582944 - MER65A-int LTR ERV1 -3972 899 852 1781 159 7 0 chr11 10200609 10200904 -140582649 - AluSx SINE Alu -8 304 8 2203 218 78 53 chr11 10200904 10200955 -140582598 - MER65A-int LTR ERV1 -4019 852 804 1893 139 0 0 chr11 10200955 10201281 -140582272 - AluJb SINE Alu 0 326 1 2203 218 78 53 chr11 10201281 10201675 -140581878 - MER65A-int LTR ERV1 -4067 804 376 3793 41 5 2 chr11 10201675 10202116 -140581437 - MLT2A1 LTR ERVL -2 442 1 2203 218 78 53 chr11 10202116 10202318 -140581235 - MER65A-int LTR ERV1 -4495 376 181 2883 152 46 67 chr11 10202318 10202931 -140580622 + LTR9 LTR ERV1 1 600 -12 288 287 16 25 chr11 10202958 10203080 -140580473 - MER65A-int LTR ERV1 -4703 168 48 2712 111 27 36 chr11 10203124 10203182 -140580371 - MER65A LTR ERV1 0 445 388 2353 122 71 29 chr11 10203182 10203222 -140580331 - MSTA LTR MaLR 0 428 391 2840 6 0 0 chr11 10203222 10203538 -140580015 + AluYb8 SINE Alu 1 316 -2 2353 122 71 29 chr11 10203538 10203550 -140580003 - MSTA LTR MaLR -37 391 381 1777 160 24 0 chr11 10203550 10203843 -140579710 + AluJo SINE Alu 2 301 -11 2353 122 71 29 chr11 10203843 10204200 -140579353 - MSTA LTR MaLR -47 381 1 2712 111 27 36 chr11 10204200 10204549 -140579004 - MER65A LTR ERV1 -57 388 40 252 59 0 0 chr11 10204549 10204583 -140578970 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2712 111 27 36 chr11 10204583 10204623 -140578930 - MER65A LTR ERV1 -405 40 1 1309 267 55 0 chr11 10204630 10204960 -140578593 + LTR16B LTR ERVL 9 356 -108 450 161 354 15 chr11 10205055 10205185 -140578368 + MER5A DNA MER1_type 16 189 0 331 301 116 7 chr11 10205278 10205424 -140578129 - MIR3 SINE MIR -43 165 4 361 291 0 0 chr11 10205489 10205575 -140577978 + MER21B LTR ERV1 1 86 -777 1267 215 109 15 chr11 10205647 10206205 -140577348 + MER21B LTR ERV1 98 754 -109 561 172 203 44 chr11 10206258 10206485 -140577068 + MER33 DNA MER1_type 62 324 0 4606 147 62 25 chr11 10206930 10207808 -140575745 - MER4D LTR ERV1 0 872 1 2084 55 0 36 chr11 10208264 10208539 -140575014 + AluY SINE Alu 38 302 -9 21 0 0 0 chr11 10209379 10209400 -140574153 + AT_rich Low_complexity Low_complexity 1 21 0 1837 133 30 10 chr11 10212083 10212383 -140571170 + AluJb SINE Alu 1 306 -6 494 274 116 3 chr11 10212385 10212738 -140570815 + L1ME4a LINE L1 5203 5597 -743 2273 94 3 0 chr11 10212771 10213079 -140570474 + AluSx SINE Alu 1 309 -3 227 343 0 0 chr11 10214017 10214084 -140569469 + L2 LINE L2 3206 3272 0 268 204 148 37 chr11 10214845 10214953 -140568600 + L1ME4a LINE L1 6000 6119 -2 264 253 247 33 chr11 10215199 10215381 -140568172 + MIR SINE MIR 32 252 -10 2361 66 0 14 chr11 10215455 10215742 -140567811 - AluSc SINE Alu -23 286 4 2247 82 0 50 chr11 10217142 10217461 -140566092 - AluY SINE Alu -8 303 1 1903 264 107 35 chr11 10217959 10218606 -140564947 - MER115 DNA AcHobo 0 693 1 703 209 68 12 chr11 10220093 10220256 -140563297 + MER5B DNA MER1_type 1 172 -6 2108 104 7 0 chr11 10220711 10220999 -140562554 + AluSx SINE Alu 6 295 -17 192 143 89 54 chr11 10221242 10221298 -140562255 + MIR3 SINE MIR 143 200 -8 1725 137 0 83 chr11 10221322 10221635 -140561918 - AluJb SINE Alu -25 287 1 394 259 118 22 chr11 10221716 10221851 -140561702 - MIR SINE MIR -30 232 85 941 170 0 82 chr11 10221893 10221940 -140561613 - MER5B DNA MER1_type 0 178 129 2118 140 0 3 chr11 10221940 10222248 -140561305 - AluSx SINE Alu -5 307 1 941 170 0 82 chr11 10222248 10222394 -140561159 - MER5B DNA MER1_type -49 129 1 1043 179 10 0 chr11 10222544 10222762 -140560791 + AluJb SINE Alu 87 306 0 1956 124 32 38 chr11 10222950 10223264 -140560289 + AluSx SINE Alu 1 312 0 597 249 24 83 chr11 10223789 10224042 -140559511 - MIR SINE MIR -8 254 17 503 281 59 59 chr11 10224668 10224924 -140558629 - MIR SINE MIR -6 256 1 1902 112 11 21 chr11 10226249 10226534 -140557019 + AluJo SINE Alu 1 282 -30 258 32 0 0 chr11 10226534 10226565 -140556988 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 2493 69 0 19 chr11 10227220 10227537 -140556016 + AluY SINE Alu 1 311 0 809 185 94 22 chr11 10228395 10228511 -140555042 - L1MC/D LINE L1 -743 5403 5297 1865 179 3 0 chr11 10228511 10228807 -140554746 + AluSx SINE Alu 1 297 -15 809 185 94 22 chr11 10228807 10228946 -140554607 - L1MC/D LINE L1 -849 5297 5167 27 0 0 0 chr11 10228946 10228973 -140554580 + AT_rich Low_complexity Low_complexity 1 27 0 2429 59 0 3 chr11 10228973 10229262 -140554291 - AluY SINE Alu -23 288 1 831 158 24 0 chr11 10229272 10229399 -140554154 - FLAM_C SINE Alu -1 132 3 644 209 44 0 chr11 10229406 10229564 -140553989 - L1MC/D LINE L1 -2811 3335 3171 30 27 0 0 chr11 10231560 10231597 -140551956 + AT_rich Low_complexity Low_complexity 1 37 0 625 281 98 72 chr11 10232301 10232689 -140550864 + HAL1 LINE L1 73 482 -2025 183 42 0 0 chr11 10232689 10232713 -140550840 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 625 281 98 72 chr11 10232713 10232907 -140550646 + HAL1 LINE L1 482 670 -1837 1777 233 24 9 chr11 10232996 10233421 -140550132 - L1ME1 LINE L1 -5 6161 5731 1108 201 97 37 chr11 10233422 10233517 -140550036 - L1MD2 LINE L1 -315 6044 5956 1967 164 0 3 chr11 10233517 10233815 -140549738 + AluSx SINE Alu 1 297 -15 1108 201 97 37 chr11 10233815 10234018 -140549535 - L1MD2 LINE L1 -403 5956 5728 2108 101 3 7 chr11 10234178 10234475 -140549078 - AluSc SINE Alu -13 296 1 232 337 50 40 chr11 10234603 10234704 -140548849 - L2 LINE L2 -48 3224 3123 349 191 24 36 chr11 10234798 10234882 -140548671 + MIR SINE MIR 180 262 0 858 193 99 9 chr11 10235248 10235471 -140548082 + L1MB8 LINE L1 5931 6173 -5 1263 124 0 0 chr11 10235895 10236086 -140547467 - L1PA16 LINE L1 -194 5957 5767 22 35 0 0 chr11 10237412 10237441 -140546112 + AT_rich Low_complexity Low_complexity 1 29 0 776 206 0 0 chr11 10237740 10237871 -140545682 + AluSq/x SINE Alu 3 133 -180 2171 115 3 3 chr11 10238099 10238394 -140545159 - AluSx SINE Alu -12 300 6 528 194 0 40 chr11 10238416 10238540 -140545013 + L1MB7 LINE L1 6051 6169 -15 2106 133 3 3 chr11 10238548 10238849 -140544704 + AluJb SINE Alu 1 301 -11 22 0 0 0 chr11 10239007 10239029 -140544524 + AT_rich Low_complexity Low_complexity 1 22 0 5033 95 37 1 chr11 10239236 10239912 -140543641 + L1PA15 LINE L1 5463 6162 -3 719 141 0 0 chr11 10240389 10240488 -140543065 + AluJ/FLAM SINE Alu 2 100 -212 262 225 142 33 chr11 10241763 10241883 -140541670 - L1ME4a LINE L1 -1 6120 5988 2151 102 10 7 chr11 10241885 10242178 -140541375 - AluSc SINE Alu -15 294 1 2089 134 0 7 chr11 10242212 10242518 -140541035 + AluSx SINE Alu 1 304 -8 630 158 17 25 chr11 10242845 10242965 -140540588 + L1MB2 LINE L1 6038 6156 -15 255 196 0 20 chr11 10242973 10243024 -140540529 + L1ME LINE L1 5615 5664 -457 1677 127 13 71 chr11 10243713 10244021 -140539532 + AluSc SINE Alu 3 292 -17 211 300 0 17 chr11 10244041 10244101 -140539452 + GA-rich Low_complexity Low_complexity 3 61 0 228 246 0 0 chr11 10245182 10245243 -140538310 + (TA)n Simple_repeat Simple_repeat 1 61 0 1286 179 71 40 chr11 10246179 10246476 -140537077 + AluJb SINE Alu 5 310 -2 2407 87 3 0 chr11 10246498 10246797 -140536756 - AluSp SINE Alu -13 300 1 2405 76 0 0 chr11 10247284 10247574 -140535979 - AluSp SINE Alu -23 290 1 21 0 0 0 chr11 10248185 10248206 -140535347 + AT_rich Low_complexity Low_complexity 1 21 0 394 335 158 28 chr11 10249131 10249327 -140534226 + L2 LINE L2 2942 3188 -84 2430 96 207 5 chr11 10249327 10249714 -140533839 + MER4C LTR ERV1 1 465 0 394 335 158 28 chr11 10249714 10249801 -140533752 + L2 LINE L2 3188 3262 -10 492 211 48 80 chr11 10250171 10250463 -140533090 - MER112 DNA MER1_type -8 252 1 518 276 99 5 chr11 10250600 10250792 -140532761 - MIR SINE MIR 0 262 53 2673 33 0 0 chr11 10250811 10251112 -140532441 - AluY SINE Alu -10 301 1 204 309 29 15 chr11 10251338 10251406 -140532147 + L2 LINE L2 3187 3255 -17 323 221 15 0 chr11 10251438 10251506 -140532047 + MIR SINE MIR 54 122 -86 221 269 0 30 chr11 10252017 10252084 -140531469 + GA-rich Low_complexity Low_complexity 2 66 0 2392 89 0 19 chr11 10252830 10253145 -140530408 + AluSc SINE Alu 1 309 0 2845 110 106 9 chr11 10253610 10254036 -140529517 + MLT1C LTR MaLR 1 467 0 820 311 196 36 chr11 10254394 10255257 -140528296 + L3 LINE CR1 480 1480 -97 332 164 15 0 chr11 10255258 10255325 -140528228 + (TG)n Simple_repeat Simple_repeat 2 69 0 1941 83 0 149 chr11 10255343 10255693 -140527860 - AluSq SINE Alu -15 298 1 1791 148 16 26 chr11 10255803 10256107 -140527446 + AluJo SINE Alu 1 301 -11 899 125 0 0 chr11 10257563 10257691 -140525862 + FLAM_C SINE Alu 16 143 0 294 29 0 0 chr11 10258108 10258143 -140525410 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 411 143 12 168 chr11 10258846 10259007 -140524546 - MER104 DNA Tc2 -3 177 42 2468 90 0 0 chr11 10259013 10259325 -140524228 + AluSx SINE Alu 1 312 0 1887 153 7 7 chr11 10259554 10259854 -140523699 - AluJb SINE Alu -12 300 1 261 264 11 22 chr11 10260988 10261079 -140522474 + GA-rich Low_complexity Low_complexity 5 94 0 891 161 0 0 chr11 10261166 10261296 -140522257 - FLAM_C SINE Alu -3 130 1 2502 64 0 16 chr11 10261964 10262275 -140521278 - AluY SINE Alu -5 306 1 595 104 26 149 chr11 10262287 10262330 -140521223 - L1MB4 LINE L1 -6 6174 6127 2340 75 17 0 chr11 10262330 10262624 -140520929 - AluSp SINE Alu -14 299 1 595 104 26 149 chr11 10262624 10262635 -140520918 - L1MB4 LINE L1 -53 6127 6116 2203 94 3 0 chr11 10262635 10262921 -140520632 - AluSp SINE Alu 0 313 27 595 104 26 149 chr11 10262921 10263019 -140520534 - L1MB4 LINE L1 -64 6116 6040 1613 224 52 72 chr11 10263791 10263893 -140519660 - L1ME3A LINE L1 -99 6140 6037 1726 145 10 52 chr11 10263893 10264203 -140519350 + AluJo SINE Alu 2 298 -14 1613 224 52 72 chr11 10264203 10264639 -140518914 - L1ME3A LINE L1 -202 6037 5613 1498 246 108 62 chr11 10264638 10265745 -140517808 - L1ME3A LINE L1 -945 5270 4113 * 360 286 0 0 chr11 10266006 10266104 -140517449 - L1ME3A LINE L1 -2262 3953 3856 589 258 52 34 chr11 10266158 10266302 -140517251 - L1ME3A LINE L1 -3921 2475 2335 2264 93 0 0 chr11 10266302 10266591 -140516962 - AluSc SINE Alu -20 289 1 589 258 52 34 chr11 10266591 10266795 -140516758 - L1ME3A LINE L1 -4061 2335 2121 578 220 64 7 chr11 10267567 10267708 -140515845 + MER58B DNA MER1_type 191 339 -2 2185 88 6 50 chr11 10268318 10268635 -140514918 + AluSg SINE Alu 1 303 -7 21 0 0 0 chr11 10269468 10269489 -140514064 + AT_rich Low_complexity Low_complexity 1 21 0 2109 120 3 10 chr11 10269895 10270196 -140513357 - AluSx SINE Alu -13 299 1 22 0 0 0 chr11 10272155 10272177 -140511376 + AT_rich Low_complexity Low_complexity 1 22 0 416 102 17 0 chr11 10272179 10272238 -140511315 - U7 snRNA snRNA -2 61 2 949 209 51 105 chr11 10272922 10273112 -140510441 + L1MC4 LINE L1 7620 7819 -223 1282 69 0 17 chr11 10273112 10273287 -140510266 + L1PA8 LINE L1 6001 6172 0 949 209 51 105 chr11 10273287 10273526 -140510027 + L1MC4 LINE L1 7819 8026 -16 28 0 0 0 chr11 10274235 10274263 -140509290 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 10276076 10276097 -140507456 + AT_rich Low_complexity Low_complexity 1 21 0 460 236 73 73 chr11 10277422 10277600 -140505953 - MER5B DNA MER1_type 0 178 1 297 254 70 0 chr11 10277616 10277687 -140505866 - MIR3 SINE MIR -52 156 81 282 56 0 0 chr11 10278595 10278631 -140504922 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 1843 158 0 7 chr11 10278631 10278909 -140504644 - AluJo SINE Alu -26 286 11 362 327 12 48 chr11 10279131 10279215 -140504338 + L1MC4a LINE L1 5777 5854 -1954 2349 102 0 6 chr11 10279215 10279529 -140504024 + AluSx SINE Alu 1 312 0 362 327 12 48 chr11 10279529 10279612 -140503941 + L1MC4a LINE L1 5854 5938 -1870 1798 150 3 18 chr11 10280126 10280438 -140503115 - AluJb SINE Alu 0 308 1 387 272 35 26 chr11 10280524 10280638 -140502915 - MER5A DNA MER1_type -30 159 45 300 324 42 35 chr11 10280525 10280667 -140502886 + MER5A DNA MER1_type 43 185 -4 * 2543 153 84 19 chr11 10281201 10281769 -140501784 + L1MB4 LINE L1 5575 6179 -1 1648 149 38 60 chr11 10282938 10283254 -140500299 - AluJo SINE Alu -3 309 1 834 248 220 28 chr11 10283939 10284438 -140499115 - L2 LINE L2 -2 3311 2716 2629 43 0 0 chr11 10285148 10285448 -140498105 - AluY SINE Alu -11 300 1 351 294 203 0 chr11 10285879 10286032 -140497521 - MIR SINE MIR -8 254 71 27 49 0 0 chr11 10286091 10286132 -140497421 + AT_rich Low_complexity Low_complexity 1 41 0 1270 109 5 65 chr11 10288623 10288824 -140494729 - AluJb SINE Alu -11 301 113 231 108 0 0 chr11 10288827 10288864 -140494689 + Alu SINE Alu 200 236 -67 875 145 0 0 chr11 10288868 10288992 -140494561 - AluJb SINE Alu -188 124 1 1134 180 88 0 chr11 10289379 10289565 -140493988 - MER46A DNA MER2_type -2495 236 27 1517 173 40 40 chr11 10289565 10289743 -140493810 - AluJo SINE Alu -12 300 120 2365 109 0 0 chr11 10289743 10290045 -140493508 + AluSx SINE Alu 1 302 -10 1517 173 40 40 chr11 10290045 10290166 -140493387 - AluJo SINE Alu -191 121 1 1134 180 88 0 chr11 10290166 10290196 -140493357 - MER46A DNA MER2_type -2704 27 1 39 38 0 0 chr11 10291083 10291136 -140492417 + AT_rich Low_complexity Low_complexity 1 53 0 1876 163 0 0 chr11 10292756 10293045 -140490508 - AluJb SINE Alu -21 291 3 1264 165 5 27 chr11 10293268 10293492 -140490061 - AluJb SINE Alu -9 303 85 24 32 0 0 chr11 10293609 10293640 -140489913 + AT_rich Low_complexity Low_complexity 1 31 0 203 284 126 63 chr11 10293640 10293767 -140489786 - MIR SINE MIR -4 258 124 1587 193 33 3 chr11 10293770 10294071 -140489482 + AluSx SINE Alu 3 312 0 478 171 51 68 chr11 10294096 10294213 -140489340 - MIR SINE MIR -135 127 13 296 238 77 0 chr11 10294219 10294347 -140489206 - L1ME LINE L1 -345 5817 5682 3925 148 24 6 chr11 10294579 10295384 -140488169 + L1MA4 LINE L1 4634 5443 -743 1819 55 47 8 chr11 10295384 10295637 -140487916 + L1MA2 LINE L1 6037 6301 -3 4802 123 56 2 chr11 10295683 10296506 -140487047 + L1MA4 LINE L1 5428 6294 -6 247 67 67 0 chr11 10296506 10296551 -140487002 - L1MC5 LINE L1 -311 7650 7603 2043 55 3 86 chr11 10296575 10296865 -140486688 + AluY SINE Alu 5 270 -41 189 74 0 0 chr11 10296870 10296897 -140486656 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1595 209 72 71 chr11 10296962 10297613 -140485940 - L1MC5 LINE L1 -392 7569 6918 1662 113 0 0 chr11 10297676 10297898 -140485655 - AluSg/x SINE Alu -11 301 80 8795 136 12 7 chr11 10297898 10299052 -140484501 + L1P LINE L1 3828 4992 -1154 2303 95 0 0 chr11 10299052 10299348 -140484205 + AluSc SINE Alu 1 296 -13 8795 136 12 7 chr11 10299348 10299727 -140483826 + L1P LINE L1 4992 5368 -778 880 97 28 28 chr11 10299859 10300003 -140483550 + AluY SINE Alu 168 311 0 7928 84 22 2 chr11 10300003 10301222 -140482331 + L1PA11 LINE L1 3294 4536 -1610 4587 111 44 0 chr11 10301522 10302210 -140481343 + L1PA11 LINE L1 5455 6172 -2 951 194 87 0 chr11 10302218 10302460 -140481093 + L1ME LINE L1 5310 5572 -594 546 181 0 0 chr11 10302471 10302554 -140480999 + AluS SINE Alu 1 83 -230 1946 88 0 0 chr11 10302720 10302969 -140480584 + AluY SINE Alu 59 307 -4 2283 76 0 33 chr11 10303504 10303808 -140479745 + AluSq SINE Alu 1 294 -19 180 419 73 0 chr11 10305677 10305801 -140477752 - MIR3 SINE MIR -24 184 52 229 388 54 0 chr11 10305932 10306061 -140477492 + L2 LINE L2 2917 3052 -220 880 187 113 127 chr11 10306085 10306464 -140477089 + MLT1A2 LTR MaLR 1 374 0 2140 124 3 0 chr11 10306480 10306778 -140476775 - AluSx SINE Alu -13 299 1 7108 53 11 0 chr11 10307140 10308259 -140475294 - L1PA6 LINE L1 -7 6147 5028 271 284 30 0 chr11 10309281 10309348 -140474205 + L2 LINE L2 3150 3218 -54 349 317 156 27 chr11 10309397 10309541 -140474012 - MIR SINE MIR -6 256 132 2195 139 3 0 chr11 10309541 10309851 -140473702 + AluSx SINE Alu 1 311 -1 349 317 156 27 chr11 10309851 10309930 -140473623 - MIR SINE MIR -130 132 4 365 330 60 0 chr11 10309997 10310212 -140473341 + Charlie8 DNA MER1_type 27 254 -2163 360 288 153 0 chr11 10310551 10310662 -140472891 + L3 LINE CR1 568 695 -882 1308 164 0 23 chr11 10311525 10311744 -140471809 + AluJo SINE Alu 87 300 -12 2174 92 41 3 chr11 10312265 10312559 -140470994 + AluSg SINE Alu 1 305 -5 1238 198 8 21 chr11 10312764 10313056 -140470497 - L1M1 LINE L1 -398 5785 5494 2444 62 10 0 chr11 10313128 10313420 -140470133 - AluSx SINE Alu -17 295 1 387 150 168 9 chr11 10313434 10313547 -140470006 - HsTC2 DNA Tc2 -49 1849 1 460 246 231 10 chr11 10314177 10314380 -140469173 + L2 LINE L2 3064 3311 -2 323 119 51 0 chr11 10314857 10314916 -140468637 - LTR50 LTR ERVL 0 795 734 2140 137 0 6 chr11 10314916 10315231 -140468322 - AluSq SINE Alu 0 313 1 1192 176 0 12 chr11 10315146 10315233 -140468320 - AluJo SINE Alu -92 220 134 1879 156 0 20 chr11 10315233 10315395 -140468158 - AluJb SINE Alu -17 295 140 2260 108 0 3 chr11 10315395 10315692 -140467861 - AluSc SINE Alu -12 297 2 1879 156 0 20 chr11 10315692 10315830 -140467723 - AluJb SINE Alu -172 140 1 1192 176 0 12 chr11 10315830 10315966 -140467587 - AluJo SINE Alu -178 134 1 616 156 50 124 chr11 10315968 10316186 -140467367 - LTR41 LTR ERVL -54 719 518 610 265 6 11 chr11 10316411 10316592 -140466961 - LTR41 LTR ERVL -586 187 8 22 56 0 0 chr11 10316832 10316868 -140466685 + AT_rich Low_complexity Low_complexity 1 36 0 190 250 96 67 chr11 10316874 10316978 -140466575 - L2 LINE L2 -12 3301 3195 2231 100 3 0 chr11 10317073 10317364 -140466189 + AluSp SINE Alu 3 294 -19 21 0 0 0 chr11 10317364 10317385 -140466168 + AT_rich Low_complexity Low_complexity 1 21 0 1816 115 0 0 chr11 10317565 10317809 -140465744 + AluSx SINE Alu 55 298 -14 2345 90 0 7 chr11 10318779 10319078 -140464475 - AluSq SINE Alu -16 297 1 1251 170 54 81 chr11 10319565 10319692 -140463861 - L1MB7 LINE L1 -17 6167 6038 255 61 0 0 chr11 10319692 10319725 -140463828 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2153 141 0 3 chr11 10319725 10320038 -140463515 + AluSx SINE Alu 1 312 0 1251 170 54 81 chr11 10320038 10320244 -140463309 - L1MB7 LINE L1 -144 6040 5842 222 317 142 17 chr11 10321041 10321161 -140462392 - MIR SINE MIR -113 149 15 1635 186 7 29 chr11 10321407 10321714 -140461839 - AluJb SINE Alu -12 300 1 45 45 0 0 chr11 10322668 10322734 -140460819 + AT_rich Low_complexity Low_complexity 1 66 0 260 87 239 0 chr11 10323283 10323329 -140460224 + AluSc SINE Alu 232 288 -11 26 30 0 0 chr11 10324527 10324560 -140458993 + AT_rich Low_complexity Low_complexity 1 33 0 2311 123 0 0 chr11 10324653 10324961 -140458592 - AluSx SINE Alu -4 308 1 466 250 57 14 chr11 10325769 10325909 -140457644 + MER5B DNA MER1_type 4 149 -29 216 292 42 31 chr11 10326325 10326421 -140457132 - MIR SINE MIR 0 262 166 1989 131 3 7 chr11 10327067 10327357 -140456196 + AluSx SINE Alu 1 289 -23 205 167 0 0 chr11 10327722 10327758 -140455795 + A-rich Low_complexity Low_complexity 3 38 0 1680 191 7 33 chr11 10327890 10328194 -140455359 + AluJo SINE Alu 1 296 -16 27 0 0 0 chr11 10328708 10328735 -140454818 + AT_rich Low_complexity Low_complexity 1 27 0 1803 181 148 19 chr11 10328902 10329387 -140454166 + LTR10A LTR ERV1 1 548 -61 1709 159 41 21 chr11 10329419 10329709 -140453844 - AluJo SINE Alu -16 296 1 304 326 91 21 chr11 10329736 10329923 -140453630 + L1MEd LINE L1 2 201 -5918 1234 151 139 4 chr11 10330042 10330293 -140453260 + MER49 LTR ERV1 1 285 -638 * 2904 152 96 46 chr11 10330277 10330323 -140453230 + MER4D LTR ERV1 50 92 -811 1673 158 18 14 chr11 10330323 10330608 -140452945 - AluJb SINE Alu -10 302 17 2904 152 96 46 chr11 10330608 10331271 -140452282 + MER4D LTR ERV1 92 893 -10 224 331 0 22 chr11 10331615 10331718 -140451835 + A-rich Low_complexity Low_complexity 1 102 -31 2437 70 0 3 chr11 10331718 10332020 -140451533 + AluY SINE Alu 1 301 -10 224 331 0 22 chr11 10332020 10332052 -140451501 + A-rich Low_complexity Low_complexity 102 133 0 1998 218 110 28 chr11 10332108 10332778 -140450775 - MER50 LTR ERV1 0 734 10 1344 245 24 63 chr11 10332803 10333421 -140450132 + L1MEd LINE L1 2137 2726 -3403 1633 201 10 7 chr11 10333421 10333724 -140449829 + AluJo SINE Alu 1 304 -8 1344 245 24 63 chr11 10333724 10333804 -140449749 + L1MEd LINE L1 2726 2808 -3321 312 231 15 0 chr11 10333804 10333869 -140449684 + MIR SINE MIR 197 262 0 353 93 0 37 chr11 10334130 10334184 -140449369 - L2 LINE L2 -1 3312 3261 900 293 8 16 chr11 10336438 10336687 -140446866 - MIR SINE MIR 0 262 16 2536 37 0 7 chr11 10337022 10337316 -140446237 + AluY SINE Alu 1 292 -19 186 43 0 0 chr11 10337365 10337388 -140446165 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1645 167 48 11 chr11 10337396 10337666 -140445887 - AluJb SINE Alu -32 280 1 2568 47 3 0 chr11 10338068 10338366 -140445187 + AluY SINE Alu 1 299 -12 246 320 156 16 chr11 10338571 10338815 -140444738 + L1ME LINE L1 4869 5146 -1000 6390 121 27 64 chr11 10338817 10339444 -140444109 + Tigger3b DNA MER2_type 2 651 -2377 2092 111 6 44 chr11 10339444 10339760 -140443793 + AluSc SINE Alu 1 304 -5 2114 96 0 61 chr11 10339763 10340076 -140443477 + AluSg1 SINE Alu 1 294 -15 6390 121 27 64 chr11 10340076 10340598 -140442955 + Tigger3b DNA MER2_type 653 1193 -1835 1172 107 45 102 chr11 10340598 10340713 -140442840 - MER30 DNA MER1_type 0 230 110 1958 93 12 0 chr11 10340713 10340961 -140442592 + AluSg SINE Alu 1 251 -59 1172 107 45 102 chr11 10340961 10340983 -140442570 - MER30 DNA MER1_type -120 110 88 2206 100 10 3 chr11 10340983 10341273 -140442280 + AluSg SINE Alu 1 292 -18 1172 107 45 102 chr11 10341273 10341378 -140442175 - MER30 DNA MER1_type -142 88 1 6390 121 27 64 chr11 10341378 10341486 -140442067 + Tigger3b DNA MER2_type 1193 1217 -14 1028 233 82 35 chr11 10341577 10341684 -140441869 + L1ME LINE L1 5258 5358 -804 1714 174 41 0 chr11 10341684 10341977 -140441576 + AluJb SINE Alu 2 306 -6 1028 233 82 35 chr11 10341977 10342322 -140441231 + L1ME LINE L1 5358 5624 -538 369 0 0 0 chr11 10342322 10342363 -140441190 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 1028 233 82 35 chr11 10342363 10342393 -140441160 + L1ME LINE L1 5624 5651 -511 649 176 8 15 chr11 10342404 10342536 -140441017 + L1MCb LINE L1 579 923 -5373 717 148 0 25 chr11 10342561 10342683 -140440870 - FLAM_C SINE Alu -24 119 1 2214 124 8 3 chr11 10342683 10343046 -140440507 + L1MCb LINE L1 907 1271 -5293 1383 271 5 0 chr11 10343043 10343469 -140440084 + L1M4 LINE L1 4816 5246 -900 * 1315 166 0 4 chr11 10343469 10343698 -140439855 + L1MC1 LINE L1 6105 6332 -1 236 366 30 0 chr11 10343714 10343845 -140439708 - L2 LINE L2 -1190 2124 1990 2409 93 0 0 chr11 10343845 10344147 -140439406 + AluSc SINE Alu 1 302 -7 2216 128 0 3 chr11 10344459 10344764 -140438789 + AluSx SINE Alu 1 304 -8 1818 171 47 0 chr11 10345264 10345562 -140437991 - AluJo SINE Alu 0 312 1 26 30 0 0 chr11 10345899 10345932 -140437621 + AT_rich Low_complexity Low_complexity 1 33 0 2302 108 0 0 chr11 10346004 10346310 -140437243 - AluSx SINE Alu -6 306 1 333 260 125 82 chr11 10346446 10346654 -140436899 + L2 LINE L2 2237 2453 -861 531 259 89 57 chr11 10346917 10347026 -140436527 - HAL1 LINE L1 -2222 285 181 1852 152 3 59 chr11 10347026 10347349 -140436204 - AluJb SINE Alu -7 305 1 531 259 89 57 chr11 10347349 10347424 -140436129 - HAL1 LINE L1 -2326 181 110 2364 71 0 14 chr11 10347424 10347720 -140435833 - AluY SINE Alu -19 292 1 531 259 89 57 chr11 10347720 10347781 -140435772 - HAL1 LINE L1 -2397 110 31 504 139 0 0 chr11 10347931 10348017 -140435536 - AluSp SINE Alu 0 313 228 1906 165 68 34 chr11 10348017 10348459 -140435094 - LTR2B LTR ERV1 0 490 34 1716 108 4 4 chr11 10348481 10348712 -140434841 - AluSp SINE Alu -82 231 1 226 170 0 0 chr11 10348874 10348921 -140434632 + LTR66 LTR ERVL 394 440 -170 835 197 16 42 chr11 10349688 10349742 -140433811 + MER5A DNA MER1_type 2 56 -133 2287 101 3 0 chr11 10349742 10350050 -140433503 - AluSp SINE Alu -4 309 1 835 197 16 42 chr11 10350050 10350188 -140433365 + MER5A DNA MER1_type 56 189 0 1807 178 3 16 chr11 10350644 10350959 -140432594 + AluJo SINE Alu 1 311 -1 3879 140 18 2 chr11 10351377 10351978 -140431575 + LTR36 LTR ERV1 1 611 0 234 0 0 0 chr11 10351989 10352015 -140431538 + (CAA)n Simple_repeat Simple_repeat 2 27 0 832 192 31 104 chr11 10352788 10352809 -140430744 - MER33 DNA MER1_type -2261 324 303 2245 132 0 52 chr11 10352809 10353105 -140430448 + MER47A DNA MER2_type 1 311 -2012 2183 99 0 0 chr11 10353105 10353411 -140430142 - AluSx SINE Alu 0 306 1 1918 175 0 6 chr11 10353414 10353728 -140429825 - AluJb SINE Alu 0 312 1 2245 132 0 52 chr11 10353728 10353812 -140429741 + MER47A DNA MER2_type 313 366 0 832 192 31 104 chr11 10353812 10353980 -140429573 - MER33 DNA MER1_type -2282 303 165 1988 91 51 7 chr11 10353980 10354255 -140429298 - AluSp SINE Alu -26 287 1 832 192 31 104 chr11 10354255 10354382 -140429171 - MER33 DNA MER1_type -2420 165 30 569 254 47 22 chr11 10355131 10356134 -140427419 + L1ME1 LINE L1 2676 3786 -2360 430 235 130 9 chr11 10356134 10356249 -140427304 + FLAM_C SINE Alu 3 131 -2 569 254 47 22 chr11 10356249 10356511 -140427042 + L1ME1 LINE L1 3786 4040 -2106 1935 225 31 11 chr11 10356556 10357405 -140426148 + L1ME1 LINE L1 4906 5767 -399 7953 104 20 16 chr11 10357405 10358613 -140424940 + HSMAR1 DNA Mariner 11 1223 -64 1460 88 18 14 chr11 10358628 10358845 -140424708 + L1PA10 LINE L1 5950 6167 -1 537 79 0 0 chr11 10358861 10358937 -140424616 + HSMAR1 DNA Mariner 1212 1287 0 639 238 58 56 chr11 10358937 10359290 -140424263 + L1ME1 LINE L1 5781 6005 -161 34954 85 6 34 chr11 10359312 10362648 -140420905 + L1PA6 LINE L1 12 3196 -2958 694 129 26 0 chr11 10362648 10362764 -140420789 + AluY SINE Alu 168 286 -25 34954 85 6 34 chr11 10362764 10365571 -140417982 + L1PA6 LINE L1 3196 6082 -72 447 232 10 0 chr11 10365639 10365738 -140417815 - MSTD LTR MaLR -294 102 3 624 234 27 38 chr11 10365787 10365971 -140417582 + HAL1 LINE L1 1283 1464 -1043 403 290 88 55 chr11 10365991 10366689 -140416864 + L1ME LINE L1 3813 4541 -1605 2254 82 3 7 chr11 10366689 10366994 -140416559 + AluY SINE Alu 1 304 -7 403 290 88 55 chr11 10366994 10367077 -140416476 + L1ME LINE L1 4541 4620 -1526 243 352 6 6 chr11 10367490 10367666 -140415887 + L1ME LINE L1 4777 4952 -1194 2049 96 7 7 chr11 10368033 10368352 -140415201 - AluSg SINE Alu 0 319 1 360 259 24 0 chr11 10368447 10368532 -140415021 - L2 LINE L2 0 3313 3227 313 302 42 0 chr11 10368606 10368702 -140414851 + L1ME LINE L1 5494 5593 -528 1718 251 24 57 chr11 10368828 10369078 -140414475 + MER119 DNA MER1_type 6 263 -320 2448 51 0 7 chr11 10369078 10369370 -140414183 + AluY SINE Alu 1 290 -21 1718 251 24 57 chr11 10369370 10369716 -140413837 + MER119 DNA MER1_type 263 582 -1 426 261 96 56 chr11 10369914 10369989 -140413564 + L1ME3A LINE L1 3419 3490 -2656 1702 141 19 58 chr11 10369989 10370302 -140413251 + AluJo SINE Alu 1 301 -11 426 261 96 56 chr11 10370302 10370475 -140413078 + L1ME3A LINE L1 3490 3677 -2469 295 262 47 13 chr11 10370534 10370683 -140412870 + L1ME3A LINE L1 3904 4057 -2089 698 278 98 36 chr11 10370741 10371039 -140412514 + L1ME3A LINE L1 4154 4432 -1714 1557 167 71 0 chr11 10371039 10371308 -140412245 - AluJb SINE Alu -24 288 1 698 278 98 36 chr11 10371308 10371592 -140411961 + L1ME3A LINE L1 4432 4772 -1374 1244 143 0 43 chr11 10371593 10371978 -140411575 + AluJb SINE Alu 91 466 0 1330 285 49 18 chr11 10371997 10373117 -140410436 + L1ME3A LINE L1 4795 5954 -216 3990 167 33 13 chr11 10373516 10373780 -140409773 + L1PA16 LINE L1 4395 4652 -1514 1839 167 3 3 chr11 10373780 10374073 -140409480 + AluJo SINE Alu 2 294 -18 3990 167 33 13 chr11 10374073 10375268 -140408285 + L1PA16 LINE L1 4652 5874 -292 349 207 12 0 chr11 10375270 10375352 -140408201 + L1PA16 LINE L1 6082 6164 -2 2280 109 3 3 chr11 10375392 10375705 -140407848 - AluSp SINE Alu 0 313 1 269 302 55 76 chr11 10376165 10376456 -140407097 + ERVL LTR ERVL 306 590 -5174 503 265 168 5 chr11 10376456 10376641 -140406912 + MLT2F LTR ERVL 1 215 -448 4457 145 48 4 chr11 10376642 10377400 -140406153 + L1MB3 LINE L1 5386 6176 -7 1564 232 50 13 chr11 10377426 10377879 -140405674 - L1MC4 LINE L1 -1122 6920 6431 210 191 0 0 chr11 10378003 10378045 -140405508 + GA-rich Low_complexity Low_complexity 3 44 0 319 324 9 0 chr11 10378113 10378224 -140405329 - L1 LINE L1 -1780 4366 4255 620 316 129 2 chr11 10378320 10378716 -140404837 - L1 LINE L1 -2049 4097 3652 405 108 40 0 chr11 10378883 10378957 -140404596 + L1MA8 LINE L1 6211 6287 -4 485 321 38 11 chr11 10379126 10379310 -140404243 - L3 LINE CR1 -6 1571 1383 223 290 39 29 chr11 10379273 10379378 -140404175 + MER5A DNA MER1_type 19 130 -53 * 206 378 0 14 chr11 10379414 10379488 -140404065 - MER5B DNA MER1_type 0 178 106 218 224 0 0 chr11 10379826 10379875 -140403678 - L2 LINE L2 0 3313 3265 319 321 44 0 chr11 10379975 10380112 -140403441 - L2 LINE L2 -182 3090 2948 193 327 40 59 chr11 10380237 10380439 -140403114 - L2 LINE L2 -560 2754 2557 2148 272 80 25 chr11 10380879 10381193 -140402360 - HAL1 LINE L1 -1716 791 496 330 67 0 0 chr11 10381193 10381238 -140402315 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2148 272 80 25 chr11 10381238 10381672 -140401881 - HAL1 LINE L1 -2011 496 2 2968 79 48 33 chr11 10381772 10382119 -140401434 + L1PB1 LINE L1 5420 5777 -374 2257 106 20 0 chr11 10382119 10382420 -140401133 + AluSg1 SINE Alu 1 307 -2 2968 79 48 33 chr11 10382420 10382526 -140401027 + L1PB1 LINE L1 5777 5880 -271 27 0 0 0 chr11 10382863 10382890 -140400663 + AT_rich Low_complexity Low_complexity 1 27 0 216 0 0 0 chr11 10383636 10383660 -140399893 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 386 256 76 40 chr11 10384220 10384497 -140399056 - L1ME4a LINE L1 -122 5999 5713 1035 282 72 52 chr11 10384991 10385505 -140398048 - L1ME3A LINE L1 -278 5892 5369 21 0 0 0 chr11 10385975 10385996 -140397557 + AT_rich Low_complexity Low_complexity 1 21 0 2224 118 0 0 chr11 10386410 10386714 -140396839 - AluY SINE Alu -7 304 1 2490 24 7 3 chr11 10387309 10387599 -140395954 - AluY SINE Alu -6 305 15 980 199 12 0 chr11 10388943 10389114 -140394439 - FAM SINE Alu -2 173 1 1086 252 84 61 chr11 10389143 10389632 -140393921 - L1ME3A LINE L1 -925 5221 4708 2192 105 0 0 chr11 10389632 10389918 -140393635 - AluSg SINE Alu -24 286 1 1086 252 84 61 chr11 10389918 10390163 -140393390 - L1ME3A LINE L1 -1438 4708 4470 2088 146 0 0 chr11 10392138 10392446 -140391107 + AluSx SINE Alu 1 308 -4 1666 161 11 0 chr11 10392924 10393203 -140390350 + AluJo SINE Alu 1 282 -30 24 32 0 0 chr11 10393704 10393735 -140389818 + AT_rich Low_complexity Low_complexity 1 31 0 1539 139 0 8 chr11 10393828 10394073 -140389480 - L1PB4 LINE L1 -2 6154 5912 2217 83 48 0 chr11 10394253 10394543 -140389010 - AluSp SINE Alu -9 304 1 578 248 45 20 chr11 10394543 10394736 -140388817 - L1MD3 LINE L1 -7 7988 7788 385 176 0 65 chr11 10395040 10395148 -140388405 + AluSp/q SINE Alu 196 296 -7 288 180 139 33 chr11 10395143 10395265 -140388288 + Charlie1 DNA MER1_type 2626 2760 -1 * 1903 128 38 85 chr11 10395855 10396253 -140387300 - Tigger7 DNA MER2_type -4 2483 2105 1414 171 75 4 chr11 10396239 10396491 -140387062 - Tigger7 DNA MER2_type -2215 272 3 * 302 283 133 18 chr11 10398274 10398387 -140385166 - MIR SINE MIR -63 145 20 207 100 0 0 chr11 10398531 10398561 -140384992 + (TATG)n Simple_repeat Simple_repeat 4 33 0 570 243 79 26 chr11 10398570 10398837 -140384716 - L1ME4a LINE L1 -196 5925 5645 1327 169 3 112 chr11 10399138 10399469 -140384084 + AluJb SINE Alu 1 295 -7 5048 132 24 40 chr11 10400030 10400430 -140383123 + L1PB3 LINE L1 5083 5488 -666 2021 130 33 0 chr11 10400430 10400730 -140382823 - AluSx SINE Alu 0 312 3 5048 132 24 40 chr11 10400730 10401055 -140382498 + L1PB3 LINE L1 5488 5817 -337 432 0 0 0 chr11 10401055 10401103 -140382450 + (CA)n Simple_repeat Simple_repeat 2 49 0 5048 132 24 40 chr11 10401103 10401470 -140382083 + L1PB3 LINE L1 5817 6154 0 2670 201 0 0 chr11 10401636 10402164 -140381389 - L1P LINE L1 -1358 4788 4261 * 10836 118 20 6 chr11 10402162 10403723 -140379830 + L1PA12 LINE L1 1013 2595 -4986 267 336 27 0 chr11 10403823 10403933 -140379620 + MIR SINE MIR 93 205 -57 580 368 86 25 chr11 10404020 10404498 -140379055 + L3 LINE CR1 864 1370 -207 595 291 99 14 chr11 10404527 10404740 -140378813 - MIR SINE MIR 0 262 32 2199 115 0 13 chr11 10405266 10405571 -140377982 + AluSx SINE Alu 1 301 -11 2150 109 3 31 chr11 10406149 10406469 -140377084 - AluSq SINE Alu 0 313 3 313 302 42 0 chr11 10406929 10407025 -140376528 - L1ME4a LINE L1 -528 5593 5494 360 259 24 0 chr11 10407099 10407184 -140376369 + L2 LINE L2 3227 3313 0 2204 96 0 3 chr11 10407279 10407572 -140375981 + AluY SINE Alu 1 292 -19 234 274 14 0 chr11 10407572 10407645 -140375908 + HAL1 LINE L1 97 170 -2337 270 191 0 0 chr11 10407647 10407689 -140375864 + Alu SINE Alu 1 42 -260 389 70 0 0 chr11 10407790 10407847 -140375706 + Alu SINE Alu 245 301 -1 1036 175 0 0 chr11 10407989 10408160 -140375393 - FAM SINE Alu 0 175 5 2066 140 3 3 chr11 10408243 10408551 -140375002 + AluSg SINE Alu 1 308 -2 242 230 47 61 chr11 10408964 10408985 -140374568 - L1MA10 LINE L1 -10 6324 6304 1703 220 103 16 chr11 10408985 10409481 -140374072 - L1ME1 LINE L1 -20 6146 5608 1978 125 0 0 chr11 10409594 10409874 -140373679 - AluY SINE Alu -31 280 1 226 416 0 0 chr11 10410295 10410396 -140373157 + L2 LINE L2 2595 2695 -619 1969 117 139 115 chr11 10410663 10411159 -140372394 + MER4A LTR ERV1 1 508 -156 4374 148 14 15 chr11 10411160 10411883 -140371670 + MER50 LTR ERV1 1 722 -12 6593 144 43 20 chr11 10411919 10414008 -140369545 + MER50-int LTR ERV1 1 2218 -4987 284 221 0 0 chr11 10414180 10414257 -140369296 + L1MEc LINE L1 2240 2316 -4080 383 175 24 22 chr11 10414267 10414358 -140369195 + Tigger5 DNA MER2_type 4 2323 0 297 221 53 0 chr11 10414381 10414476 -140369077 + L1MEc LINE L1 2331 2430 -3785 504 232 74 71 chr11 10415212 10415509 -140368044 + L1MC5 LINE L1 7638 7935 -26 22 0 0 30 chr11 10415649 10415666 -140367887 + AT_rich Low_complexity Low_complexity 1 18 -14 2092 101 0 10 chr11 10415666 10415964 -140367589 + AluY SINE Alu 1 295 -16 22 0 0 30 chr11 10415964 10415979 -140367574 + AT_rich Low_complexity Low_complexity 18 32 0 23 0 0 0 chr11 10416778 10416801 -140366752 + AT_rich Low_complexity Low_complexity 1 23 0 1058 320 139 25 chr11 10416957 10417567 -140365986 + L3 LINE CR1 895 1574 -3 21 36 0 0 chr11 10417644 10417672 -140365881 + AT_rich Low_complexity Low_complexity 1 28 0 2103 112 7 3 chr11 10417871 10418156 -140365397 + AluSx SINE Alu 1 286 -26 480 18 0 0 chr11 10418156 10418213 -140365340 + (CATA)n Simple_repeat Simple_repeat 2 58 0 386 292 93 62 chr11 10418599 10418952 -140364601 - MLT1J LTR MaLR -43 468 105 2544 44 0 0 chr11 10419703 10419996 -140363557 - AluY SINE Alu -18 293 1 216 328 109 17 chr11 10420482 10420601 -140362952 + MIR3 SINE MIR 9 138 -70 27 29 0 0 chr11 10420691 10420725 -140362828 + AT_rich Low_complexity Low_complexity 1 34 0 2398 75 0 3 chr11 10420804 10421111 -140362442 + AluSg SINE Alu 1 306 -4 415 217 0 0 chr11 10421126 10421218 -140362335 - MER113 DNA MER1_type? -415 106 15 2189 117 0 16 chr11 10421810 10422126 -140361427 - AluSx SINE Alu -1 311 1 365 245 91 7 chr11 10422206 10422349 -140361204 + L1MEc LINE L1 2517 2671 -3544 * 687 159 165 0 chr11 10422347 10422523 -140361030 + L1MB7 LINE L1 5199 5403 -743 3083 163 21 44 chr11 10422544 10422826 -140360727 + L1MB7 LINE L1 5544 5831 -353 2302 69 0 10 chr11 10422826 10423130 -140360423 + AluY SINE Alu 1 301 -10 3083 163 21 44 chr11 10423130 10423373 -140360180 + L1MB7 LINE L1 5831 6078 -106 2174 98 4 0 chr11 10423373 10423648 -140359905 + AluSp SINE Alu 2 277 -36 366 85 0 0 chr11 10423650 10423709 -140359844 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 233 29 29 0 chr11 10423710 10423744 -140359809 + (TA)n Simple_repeat Simple_repeat 1 35 0 3083 163 21 44 chr11 10423744 10423868 -140359685 + L1MB7 LINE L1 6078 6184 0 338 265 143 0 chr11 10423917 10424015 -140359538 + L1ME3A LINE L1 6006 6117 -53 2261 262 173 22 chr11 10424425 10425617 -140357936 + L2 LINE L2 1930 3287 -26 367 358 51 11 chr11 10425753 10425929 -140357624 - L3b LINE CR1 -70 1513 1331 2046 71 4 0 chr11 10425949 10426204 -140357349 - AluY SINE Alu -16 295 40 181 333 72 14 chr11 10426385 10426454 -140357099 + MIR SINE MIR 39 111 -97 281 374 81 17 chr11 10426631 10426805 -140356748 - L3 LINE CR1 -1292 285 101 21 36 0 0 chr11 10426911 10426939 -140356614 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr11 10426962 10426987 -140356566 + AT_rich Low_complexity Low_complexity 1 25 0 1808 183 3 10 chr11 10427133 10427445 -140356108 + AluJb SINE Alu 1 310 -2 515 291 58 28 chr11 10427457 10427784 -140355769 + L1M4 LINE L1 4589 4925 -1221 693 253 16 31 chr11 10427797 10427991 -140355562 + MIR SINE MIR 25 215 -47 183 42 0 0 chr11 10427991 10428015 -140355538 + (CA)n Simple_repeat Simple_repeat 2 25 0 2250 108 0 7 chr11 10428213 10428519 -140355034 - AluSg SINE Alu -6 304 1 2669 33 0 3 chr11 10429044 10429349 -140354204 - AluY SINE Alu -7 304 1 229 313 52 10 chr11 10430158 10430254 -140353299 + MIR3 SINE MIR 103 202 -6 674 130 0 0 chr11 10431369 10431469 -140352084 + L1PB3 LINE L1 6041 6140 -14 25 83 0 0 chr11 10431472 10431532 -140352021 + AT_rich Low_complexity Low_complexity 1 60 0 247 283 0 0 chr11 10432429 10432489 -140351064 + MIR3 SINE MIR 146 205 -3 578 248 50 0 chr11 10433451 10433592 -140349961 - MIR3 SINE MIR -23 185 38 15125 196 59 12 chr11 10434087 10437919 -140345634 - L1PB1 LINE L1 0 6867 2616 2045 135 0 0 chr11 10437919 10438227 -140345326 + AluSx SINE Alu 1 308 0 15125 196 59 12 chr11 10438227 10440967 -140342586 - L1PB1 LINE L1 -4251 2616 6 1148 163 32 0 chr11 10442078 10442299 -140341254 - L1PA16 LINE L1 -9 6157 5930 2071 76 73 0 chr11 10442677 10442952 -140340601 + AluY SINE Alu 2 296 -15 1665 139 12 111 chr11 10443106 10443262 -140340291 + AluJo SINE Alu 1 108 -204 2279 102 7 0 chr11 10443262 10443556 -140339997 + AluSx SINE Alu 1 296 -16 1665 139 12 111 chr11 10443556 10443731 -140339822 + AluJo SINE Alu 108 299 -13 22 0 0 0 chr11 10444136 10444158 -140339395 + AT_rich Low_complexity Low_complexity 1 22 0 373 198 57 47 chr11 10444255 10444361 -140339192 - MIR SINE MIR -20 242 136 1766 117 0 12 chr11 10444527 10444784 -140338769 - AluJb SINE Alu -14 298 45 589 174 8 25 chr11 10444785 10444906 -140338647 + AluJb SINE Alu 189 307 -5 205 222 32 63 chr11 10445077 10445140 -140338413 - L2 LINE L2 -1 3312 3252 1890 159 0 19 chr11 10446031 10446340 -140337213 - AluJo SINE Alu -9 303 1 1902 144 4 0 chr11 10446740 10447017 -140336536 - AluSq SINE Alu -35 278 1 26 0 0 0 chr11 10447022 10447048 -140336505 + AT_rich Low_complexity Low_complexity 1 26 0 3193 178 86 8 chr11 10447057 10447794 -140335759 - Charlie1 DNA MER1_type -159 2602 1809 807 211 26 0 chr11 10447810 10447966 -140335587 - Charlie1 DNA MER1_type -1142 1619 1460 278 222 16 0 chr11 10447963 10448026 -140335527 - Charlie1 DNA MER1_type -2640 121 58 * 603 258 0 8 chr11 10448127 10448259 -140335294 - MER8 DNA MER2_type -103 136 6 234 258 15 15 chr11 10448787 10448853 -140334700 - MIR SINE MIR -1 261 196 5095 240 34 20 chr11 10448857 10450125 -140333428 - L1M4 LINE L1 -1287 4859 3565 1431 194 81 6 chr11 10450125 10450445 -140333108 + MER2 DNA MER2_type 1 344 0 5095 240 34 20 chr11 10450445 10450700 -140332853 - L1M4 LINE L1 -2581 3565 3315 2834 86 0 18 chr11 10450704 10450875 -140332678 + LTR66 LTR ERVL 1 174 -436 2200 107 7 0 chr11 10450875 10451175 -140332378 + AluSx SINE Alu 1 302 -10 2834 86 0 18 chr11 10451175 10451386 -140332167 + LTR66 LTR ERVL 174 376 -234 607 189 30 30 chr11 10451386 10451518 -140332035 - LTR10B LTR ERV1 0 547 416 244 253 123 12 chr11 10451588 10451731 -140331822 - LTR10B LTR ERV1 -297 250 1 * 253 0 0 57 chr11 10451731 10451759 -140331794 + LTR66 LTR ERVL 375 400 -210 1588 81 88 59 chr11 10451760 10452032 -140331521 + LTR66 LTR ERVL 331 610 0 1890 225 33 18 chr11 10452032 10452468 -140331085 - L1M4 LINE L1 -2828 3318 2869 1706 197 7 3 chr11 10452468 10452763 -140330790 + AluJo SINE Alu 1 296 -16 1890 225 33 18 chr11 10452763 10452926 -140330627 - L1M4 LINE L1 -3277 2869 2710 2268 261 69 65 chr11 10455406 10456675 -140326878 - L1MC4 LINE L1 0 8042 6768 29 60 0 0 chr11 10457439 10457489 -140326064 + AT_rich Low_complexity Low_complexity 1 50 0 227 176 28 190 chr11 10457959 10458101 -140325452 - MIR SINE MIR -30 232 114 458 279 46 9 chr11 10459610 10459777 -140323776 + MIR3 SINE MIR 3 180 -28 6746 69 5 2 chr11 10459917 10461068 -140322485 - L1PA6 LINE L1 0 6154 5001 1804 78 0 41 chr11 10461068 10461313 -140322240 + AluY SINE Alu 1 235 -76 243 0 0 0 chr11 10462651 10462678 -140320875 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr11 10462842 10462865 -140320688 + AT_rich Low_complexity Low_complexity 1 23 0 1113 298 32 34 chr11 10463506 10463973 -140319580 - L2 LINE L2 0 3313 2848 274 319 0 0 chr11 10463973 10464045 -140319508 - L2 LINE L2 -691 2623 2552 465 118 24 0 chr11 10464183 10464268 -140319285 - L1MB4 LINE L1 0 6180 6094 1600 194 11 0 chr11 10464302 10464586 -140318967 + AluJo SINE Alu 1 287 -25 29 0 0 0 chr11 10465043 10465072 -140318481 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 10467617 10467638 -140315915 + AT_rich Low_complexity Low_complexity 1 21 0 1550 184 0 16 chr11 10468031 10468287 -140315266 + AluJo SINE Alu 4 255 -57 1535 123 54 0 chr11 10469017 10469278 -140314275 + L1MA8 LINE L1 6013 6287 -4 1564 192 3 27 chr11 10469496 10469793 -140313760 - AluJo SINE Alu -22 290 1 256 268 18 0 chr11 10470078 10470134 -140313419 + MER20B DNA MER1_type 84 140 -643 1989 138 0 3 chr11 10470343 10470647 -140312906 + AluSx SINE Alu 3 305 -7 389 353 40 20 chr11 10471018 10471270 -140312283 + L1MEd LINE L1 594 850 -5269 549 309 57 45 chr11 10471292 10471685 -140311868 + L1M3d LINE L1 1 1552 -5475 1344 217 77 68 chr11 10471813 10472357 -140311196 + L1ME2 LINE L1 5500 6102 -62 2575 191 18 0 chr11 10472366 10472862 -140310691 + L1MB7 LINE L1 5652 6156 -28 861 222 199 73 chr11 10472874 10473492 -140310061 + L1MC5 LINE L1 6837 7532 -429 297 211 119 108 chr11 10473600 10473785 -140309768 + L1ME3A LINE L1 5977 6163 -7 252 252 0 87 chr11 10473862 10473965 -140309588 - MLT1J LTR MaLR -58 453 360 232 263 100 25 chr11 10474033 10474113 -140309440 + L2 LINE L2 3186 3271 -1 21 0 0 0 chr11 10474212 10474233 -140309320 + AT_rich Low_complexity Low_complexity 1 21 0 4277 152 10 15 chr11 10475547 10476262 -140307291 - MER50 LTR ERV1 -23 711 1 416 198 0 85 chr11 10476607 10476713 -140306840 + MER34B LTR ERV1 467 583 -2 344 347 41 0 chr11 10477062 10477183 -140306370 - L2 LINE L2 -9 3263 3138 23 0 0 0 chr11 10477416 10477439 -140306114 + AT_rich Low_complexity Low_complexity 1 23 0 223 389 14 0 chr11 10477896 10477968 -140305585 + L2 LINE L2 3101 3173 -99 310 216 227 0 chr11 10478714 10478802 -140304751 + L2 LINE L2 3204 3311 -2 2341 71 0 0 chr11 10479457 10479764 -140303789 + AluY SINE Alu 2 308 0 1763 106 102 0 chr11 10480165 10480430 -140303123 + AluSx SINE Alu 1 292 -20 578 146 50 19 chr11 10480751 10480914 -140302639 + MLT1D LTR MaLR 236 505 0 289 262 61 55 chr11 10480936 10481077 -140302476 - L1MD3 LINE L1 -11 7984 7839 1840 145 0 28 chr11 10481077 10481394 -140302159 - AluJb SINE Alu 0 309 1 289 262 61 55 chr11 10481394 10481415 -140302138 - L1MD3 LINE L1 -156 7839 7820 2052 249 90 84 chr11 10481415 10482335 -140301218 + L1MC4 LINE L1 6084 7093 -808 189 0 0 0 chr11 10482335 10482356 -140301197 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 2052 249 90 84 chr11 10482356 10482666 -140300887 + L1MC4 LINE L1 7093 7400 -501 406 301 65 56 chr11 10482642 10482948 -140300605 + L1M4 LINE L1 22 624 -6231 * 1552 277 65 52 chr11 10483144 10483800 -140299753 + L1M4 LINE L1 1004 1650 -5309 1724 176 13 10 chr11 10483800 10484102 -140299451 + AluJo SINE Alu 1 303 -9 1552 277 65 52 chr11 10484102 10484723 -140298830 + L1M4 LINE L1 1650 2312 -4647 1741 182 30 3 chr11 10484723 10485025 -140298528 + AluJb SINE Alu 1 310 -2 1552 277 65 52 chr11 10485025 10485116 -140298437 + L1M4 LINE L1 2312 2400 -4559 7168 95 20 2 chr11 10485173 10486979 -140296574 + L1PA7 LINE L1 4319 6149 -5 7118 194 17 18 chr11 10487172 10488490 -140295063 - MER50-int LTR ERV1 -3843 3362 2168 9076 108 35 3 chr11 10588501 10590019 -140193534 + MER57-int LTR ERV1 5546 7148 -389 639 123 44 0 chr11 10590019 10590133 -140193420 + LTR54B LTR ERV1 3 121 -377 198 0 0 0 chr11 10590886 10590908 -140192645 + (TA)n Simple_repeat Simple_repeat 2 23 0 441 368 133 0 chr11 10590994 10591369 -140192184 + LTR16A LTR ERVL 18 442 -8 195 235 0 0 chr11 10592057 10592091 -140191462 + L2 LINE L2 3008 3041 -272 246 250 38 12 chr11 10592238 10592318 -140191235 - MLT1I LTR MaLR -228 181 100 974 105 42 0 chr11 10592591 10592734 -140190819 + AluSp SINE Alu 1 149 -164 7399 157 53 33 chr11 10592837 10593543 -140190010 - MER51-int LTR ERV1 -2460 5356 4665 2318 85 0 3 chr11 10593543 10593848 -140189705 - AluY SINE Alu -7 304 1 7399 157 53 33 chr11 10593848 10594714 -140188839 - MER51-int LTR ERV1 -3151 4665 3753 1337 150 19 0 chr11 10594714 10594927 -140188626 - L1M1 LINE L1 -7333 232 16 2043 115 0 50 chr11 10594941 10595264 -140188289 - AluSx SINE Alu -5 307 1 690 245 85 71 chr11 10595289 10595575 -140187978 - L1M4 LINE L1 -2281 3865 3570 1422 193 27 48 chr11 10595575 10595870 -140187683 - AluJo SINE Alu -23 289 1 690 245 85 71 chr11 10595870 10596008 -140187545 - L1M4 LINE L1 -2576 3570 3435 2205 117 7 0 chr11 10596082 10596391 -140187162 + AluSq SINE Alu 3 313 0 3841 227 26 62 chr11 10596393 10597296 -140186257 - L1MA10 LINE L1 -44 7709 6775 718 236 6 13 chr11 10597296 10597453 -140186100 - FAM SINE Alu -19 156 1 3841 227 26 62 chr11 10597453 10597562 -140185991 - L1MA10 LINE L1 -978 6775 6748 1793 168 7 0 chr11 10597562 10597860 -140185693 - AluJb SINE Alu -12 300 1 3841 227 26 62 chr11 10597860 10598045 -140185508 - L1MA10 LINE L1 -1005 6748 6558 2507 196 35 2 chr11 10598041 10598561 -140184992 + L1 LINE L1 4595 5131 -1015 * 5563 239 59 9 chr11 10598561 10600531 -140183022 - L1MA10 LINE L1 -2289 5276 3210 303 321 63 79 chr11 10600576 10600766 -140182787 - L1MA10 LINE L1 -5454 2112 1926 239 252 58 19 chr11 10600859 10600962 -140182591 - L1MA10 LINE L1 -7432 133 27 700 249 143 19 chr11 10600977 10601345 -140182208 - L1M4 LINE L1 -2689 3457 3030 2014 128 7 10 chr11 10601345 10601642 -140181911 - AluSx SINE Alu -16 296 1 700 249 143 19 chr11 10601642 10601691 -140181862 - L1M4 LINE L1 -3116 3030 2988 594 220 0 0 chr11 10601791 10601911 -140181642 + AluJb SINE Alu 182 301 0 1335 206 7 39 chr11 10602001 10602282 -140181271 + AluJo SINE Alu 11 282 -30 2231 87 0 20 chr11 10602282 10602582 -140180971 - AluSc SINE Alu -13 296 3 1837 141 0 0 chr11 10602921 10603183 -140180370 + AluSx SINE Alu 35 296 -16 579 241 15 87 chr11 10603422 10603687 -140179866 - L1ME1 LINE L1 -5 6161 5916 612 259 2 1 chr11 10603716 10603864 -140179689 - L1ME1 LINE L1 -370 5796 5651 400 204 183 48 chr11 10603914 10603948 -140179605 + L1M4 LINE L1 2271 2299 -3847 1769 184 0 7 chr11 10603948 10604253 -140179300 + AluJb SINE Alu 1 303 -9 400 204 183 48 chr11 10604253 10604448 -140179105 + L1M4 LINE L1 2299 2531 -3615 2165 132 0 0 chr11 10604453 10604756 -140178797 + AluSx SINE Alu 1 303 -9 296 252 9 0 chr11 10604861 10604968 -140178585 + (TATATG)n Simple_repeat Simple_repeat 1 108 0 775 279 37 0 chr11 10604969 10605291 -140178262 + L1M4 LINE L1 2645 2978 -3168 954 35 0 0 chr11 10606740 10606853 -140176700 - L1P LINE L1 -6033 113 1 12167 156 33 19 chr11 10606858 10607032 -140176521 + L1MA3 LINE L1 2746 2916 -3389 2086 130 0 3 chr11 10607032 10607333 -140176220 + AluSx SINE Alu 1 300 -12 12167 156 33 19 chr11 10607333 10607347 -140176206 + L1MA3 LINE L1 2916 2928 -3377 2238 89 3 3 chr11 10607347 10607640 -140175913 + AluSx SINE Alu 1 293 -19 12167 156 33 19 chr11 10607640 10610955 -140172598 + L1MA3 LINE L1 2928 6305 0 605 260 40 35 chr11 10611741 10611941 -140171612 - L2 LINE L2 -4 3309 3109 2197 122 0 0 chr11 10611966 10612269 -140171284 - AluSx SINE Alu -9 303 1 231 36 0 0 chr11 10612408 10612436 -140171117 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1085 199 5 23 chr11 10612438 10612654 -140170899 - AluJb SINE Alu -31 281 70 252 0 0 0 chr11 10613017 10613045 -140170508 + (TG)n Simple_repeat Simple_repeat 1 28 0 1909 154 4 0 chr11 10613046 10613326 -140170227 - AluSx SINE Alu -31 281 1 219 358 0 81 chr11 10613706 10613829 -140169724 - L3 LINE CR1 -7 1570 1458 382 241 28 46 chr11 10613848 10613956 -140169597 - L2 LINE L2 -4 3309 3204 335 319 183 0 chr11 10615649 10615840 -140167713 + L3 LINE CR1 766 991 -586 503 273 36 7 chr11 10616081 10616220 -140167333 + MIR SINE MIR 7 149 -113 2152 256 109 24 chr11 10616543 10617433 -140166120 + L1M4 LINE L1 2654 3467 -2679 252 0 0 0 chr11 10617433 10617461 -140166092 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2093 91 29 4 chr11 10617464 10617739 -140165814 - AluSx SINE Alu -30 282 1 2152 256 109 24 chr11 10617739 10617811 -140165742 + L1M4 LINE L1 3468 3702 -2444 2900 234 36 9 chr11 10617817 10618612 -140164941 + L1M4 LINE L1 3904 4720 -1426 619 244 137 60 chr11 10618664 10618913 -140164640 - MER21B LTR ERV1 -57 806 529 705 243 153 9 chr11 10618953 10619163 -140164390 - MER21B LTR ERV1 -553 310 132 2199 127 30 43 chr11 10619163 10619532 -140164021 + THE1B LTR MaLR 1 364 0 11691 94 4 1 chr11 10619533 10621107 -140162446 + THE1B-int LTR MaLR 2 1580 0 2378 116 30 25 chr11 10621107 10621469 -140162084 + THE1B LTR MaLR 1 364 0 705 243 153 9 chr11 10621469 10621493 -140162060 - MER21B LTR ERV1 -730 133 50 306 276 13 0 chr11 10621497 10621573 -140161980 - MER21B LTR ERV1 -768 95 19 4330 118 15 126 chr11 10621594 10623145 -140160408 + pTR5 LTR ERV1 743 2606 0 360 240 13 0 chr11 10623150 10623225 -140160328 - MER21B LTR ERV1 -773 90 15 956 221 49 49 chr11 10623248 10623597 -140159956 + L1M4 LINE L1 4796 5144 -1002 251 360 54 27 chr11 10624090 10624237 -140159316 - MIR3 SINE MIR -57 151 1 6259 104 77 14 chr11 10624586 10625724 -140157829 + L1M1 LINE L1 2337 3546 -4019 1223 211 39 4 chr11 10625729 10626009 -140157544 + L1M1 LINE L1 3872 4161 -3404 300 62 31 31 chr11 10626018 10626083 -140157470 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 39938 35 21 2 chr11 10626086 10632015 -140151538 - L1PA3 LINE L1 -4 6151 103 254 174 0 0 chr11 10632115 10632161 -140151392 + Alu SINE Alu 250 295 -7 730 230 97 18 chr11 10632173 10632399 -140151154 - L1ME LINE L1 -640 5526 5283 1876 140 9 43 chr11 10632435 10632447 -140151106 - AluJo SINE Alu 0 312 301 204 40 0 0 chr11 10632447 10632472 -140151081 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 1876 140 9 43 chr11 10632472 10632648 -140150905 - AluJo SINE Alu -11 301 137 2353 59 45 0 chr11 10632648 10632934 -140150619 - AluY SINE Alu -12 299 1 1876 140 9 43 chr11 10632934 10633066 -140150487 - AluJo SINE Alu -175 137 2 23 0 0 0 chr11 10633223 10633246 -140150307 + AT_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr11 10633547 10633592 -140149961 + AT_rich Low_complexity Low_complexity 1 45 0 502 261 151 23 chr11 10633956 10634174 -140149379 - MIR SINE MIR 0 262 17 1651 191 7 17 chr11 10634960 10635259 -140148294 + AluJo SINE Alu 1 296 -16 231 36 0 0 chr11 10635259 10635287 -140148266 + (TG)n Simple_repeat Simple_repeat 2 29 0 268 279 38 0 chr11 10635294 10635373 -140148180 - MER103 DNA DNA -47 119 38 1349 150 154 8 chr11 10635377 10635644 -140147909 - AluSg1 SINE Alu -3 306 1 1545 188 32 29 chr11 10635668 10635977 -140147576 - AluJb SINE Alu -2 310 1 488 295 26 3 chr11 10636151 10636351 -140147202 + MIR SINE MIR 1 260 -2 224 309 93 21 chr11 10637502 10637599 -140145954 + MIR SINE MIR 36 139 -69 4554 153 32 13 chr11 10637982 10638420 -140145133 - L1MA8 LINE L1 0 6291 5863 2031 130 27 10 chr11 10638420 10638719 -140144834 - AluSx SINE Alu -4 308 5 4554 153 32 13 chr11 10638719 10638945 -140144608 - L1MA8 LINE L1 -428 5863 5643 1849 131 44 34 chr11 10638945 10639243 -140144310 - AluJb SINE Alu -8 304 4 4554 153 32 13 chr11 10639243 10639483 -140144070 - L1MA8 LINE L1 -648 5643 5369 389 206 26 153 chr11 10640052 10640241 -140143312 - HAL1 LINE L1 0 2507 2343 2612 108 9 35 chr11 10640287 10640499 -140143054 - MER57B LTR ERV1 -10 424 227 2503 60 0 22 chr11 10640499 10640816 -140142737 - AluY SINE Alu -1 310 1 2612 108 9 35 chr11 10640816 10641038 -140142515 - MER57B LTR ERV1 -207 227 1 593 90 0 22 chr11 10641162 10641251 -140142302 + AluJb SINE Alu 213 299 -13 369 309 72 37 chr11 10641255 10641604 -140141949 + L1PA2 LINE L1 5465 5825 -330 * 2434 219 136 17 chr11 10641294 10642064 -140141489 + L1MD2 LINE L1 5500 7992 -3 2264 99 0 0 chr11 10642103 10642396 -140141157 - AluY SINE Alu -17 294 2 1309 194 55 22 chr11 10642439 10642617 -140140936 - AluJo SINE Alu -6 306 114 189 0 0 0 chr11 10642617 10642638 -140140915 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1309 194 55 22 chr11 10642638 10642732 -140140821 - AluJo SINE Alu -198 114 25 795 231 9 0 chr11 10642740 10642956 -140140597 + Charlie2a DNA MER1_type 1755 1972 -890 2260 103 13 0 chr11 10643075 10643376 -140140177 + AluSx SINE Alu 1 305 -7 261 308 28 75 chr11 10644174 10644281 -140139272 - L2 LINE L2 -49 3223 3122 417 227 177 14 chr11 10644435 10644576 -140138977 - MIR SINE MIR -8 254 91 217 216 52 113 chr11 10644702 10644799 -140138754 - L2 LINE L2 -46 3267 3177 2692 198 12 14 chr11 10645253 10645844 -140137709 - L1MB3 LINE L1 0 6183 5594 22 35 0 0 chr11 10645847 10645876 -140137677 + AT_rich Low_complexity Low_complexity 1 29 0 347 301 135 31 chr11 10646091 10646417 -140137136 + L1M4 LINE L1 3127 3486 -2660 2233 188 40 10 chr11 10646429 10646930 -140136623 + L1MD3 LINE L1 7455 7970 -25 226 178 0 0 chr11 10647154 10647199 -140136354 + L1M4 LINE L1 3718 3762 -2384 2455 72 0 10 chr11 10647350 10647657 -140135896 - AluSq SINE Alu -9 304 1 21 36 0 0 chr11 10647691 10647719 -140135834 + AT_rich Low_complexity Low_complexity 1 28 0 934 194 24 65 chr11 10647826 10648166 -140135387 - LTR37B LTR ERV1 -11 457 132 330 284 140 53 chr11 10648269 10648533 -140135020 + L1MC/D LINE L1 5273 5559 -2249 344 197 0 0 chr11 10648820 10648881 -140134672 - MER31B LTR ERV1 -89 377 317 26 50 0 0 chr11 10648935 10648975 -140134578 + AT_rich Low_complexity Low_complexity 1 40 0 471 223 0 0 chr11 10649388 10649491 -140134062 + MER3 DNA MER1_type 1 103 -106 457 175 10 52 chr11 10650081 10650178 -140133375 + MER21B LTR ERV1 1 93 -770 2600 248 63 11 chr11 10650197 10650942 -140132611 + MER21B LTR ERV1 19 802 -61 1938 98 4 4 chr11 10653222 10653478 -140130075 - AluSp SINE Alu -18 295 40 382 230 30 30 chr11 10653618 10653753 -140129800 + L1M4 LINE L1 4500 4634 -1512 2412 69 0 7 chr11 10653758 10654064 -140129489 - AluY SINE Alu -7 304 1 1788 170 3 3 chr11 10654251 10654556 -140128997 + AluJb SINE Alu 1 305 0 1773 275 69 5 chr11 10655020 10655573 -140127980 - MLT1G LTR MaLR -2 588 1 5837 147 15 5 chr11 10655820 10657692 -140125861 + L1PA13 LINE L1 4191 6072 -91 1005 142 0 35 chr11 10657807 10657976 -140125577 + FRAM SINE Alu 14 176 0 41827 39 6 1 chr11 10658066 10664189 -140119364 + L1PA4 LINE L1 2 6152 -3 358 314 100 52 chr11 10664397 10664735 -140118818 - L1MC/D LINE L1 -331 5859 5510 823 312 152 21 chr11 10665553 10666231 -140117322 - L2 LINE L2 -5 3308 2535 300 229 0 0 chr11 10666231 10666292 -140117261 + Tigger2 DNA MER2_type 2 62 -2656 274 321 38 31 chr11 10666422 10666581 -140116972 + MIR SINE MIR 97 256 -6 241 202 121 40 chr11 10666872 10666971 -140116582 - MLT1J2 LTR MaLR -305 145 39 544 272 156 11 chr11 10668248 10668627 -140114926 - MLT1J2 LTR MaLR -11 435 1 28 0 0 0 chr11 10669020 10669048 -140114505 + AT_rich Low_complexity Low_complexity 1 28 0 2407 87 3 0 chr11 10670791 10671103 -140112450 + AluSp SINE Alu 1 313 0 1294 258 65 4 chr11 10671794 10672283 -140111270 + L1M4 LINE L1 2714 3232 -2914 1177 219 43 41 chr11 10672310 10672702 -140110851 - L1MC/D LINE L1 -1109 5106 4714 279 277 57 14 chr11 10672705 10672846 -140110707 - L1MC/D LINE L1 -1787 4428 4282 260 287 47 15 chr11 10672848 10673049 -140110504 - L1ME LINE L1 -5040 1165 956 386 329 36 15 chr11 10673091 10673228 -140110325 - L1ME LINE L1 -5474 922 783 2179 175 103 119 chr11 10674398 10675161 -140108392 + MER52A LTR ERV1 1 853 -688 5060 173 7 1 chr11 10675161 10676112 -140107441 + L1P LINE L1 4359 5315 -831 1754 98 0 4 chr11 10676116 10676351 -140107202 + Charlie3 DNA MER1_type 2469 2702 -8 4208 205 166 15 chr11 10676351 10677622 -140105931 + L1 LINE L1 2621 4166 -1980 5120 75 20 20 chr11 10677622 10678145 -140105408 + LTR8 LTR ERV1 1 526 -165 2197 82 43 0 chr11 10678145 10678425 -140105128 + AluY SINE Alu 1 292 -19 5120 75 20 20 chr11 10678425 10678592 -140104961 + LTR8 LTR ERV1 525 691 0 4208 205 166 15 chr11 10678592 10678743 -140104810 + L1 LINE L1 4166 4293 -1853 288 250 0 0 chr11 10678965 10679025 -140104528 + GA-rich Low_complexity Low_complexity 3 62 0 436 174 46 28 chr11 10679034 10679143 -140104410 + L1ME4a LINE L1 5962 6072 -49 281 331 45 6 chr11 10679263 10679420 -140104133 + L2 LINE L2 2886 3048 -224 2139 117 7 0 chr11 10679442 10679732 -140103821 + AluSx SINE Alu 14 305 -7 369 282 33 98 chr11 10680029 10680227 -140103326 + MLT1J LTR MaLR 1 221 -289 1258 179 68 64 chr11 10680232 10680528 -140103025 + AluJo SINE Alu 5 301 -11 228 313 17 108 chr11 10680636 10680812 -140102741 + MLT1J LTR MaLR 342 501 -10 21 0 0 0 chr11 10681110 10681131 -140102422 + AT_rich Low_complexity Low_complexity 1 21 0 306 224 0 0 chr11 10682042 10682100 -140101453 - MIR SINE MIR -24 238 181 2402 90 0 3 chr11 10682320 10682621 -140100932 - AluSq SINE Alu -13 300 1 742 176 55 48 chr11 10682625 10682790 -140100763 - FRAM SINE Alu 0 166 1 2295 94 0 13 chr11 10682942 10683251 -140100302 - AluSq SINE Alu -8 305 1 1268 250 89 39 chr11 10683775 10684215 -140099338 - MLT1C LTR MaLR -5 462 1 622 137 21 0 chr11 10684482 10684604 -140098949 - FLAM_C SINE Alu 0 144 21 499 70 0 0 chr11 10684605 10684676 -140098877 - Alu SINE Alu -8 304 234 749 168 0 0 chr11 10684685 10684810 -140098743 - FLAM_C SINE Alu -18 125 1 24 0 0 0 chr11 10686121 10686145 -140097408 + AT_rich Low_complexity Low_complexity 1 24 0 2326 91 0 0 chr11 10686984 10687280 -140096273 - AluSx SINE Alu -5 307 12 303 28 0 0 chr11 10688645 10688681 -140094872 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2123 107 4 0 chr11 10688686 10688966 -140094587 - AluSx SINE Alu -30 282 2 1429 174 97 0 chr11 10688969 10689251 -140094302 - AluJb SINE Alu 0 307 1 23 33 0 0 chr11 10689254 10689284 -140094269 + AT_rich Low_complexity Low_complexity 1 30 0 293 244 24 24 chr11 10689496 10689578 -140093975 - L1M4 LINE L1 -688 5496 5415 2456 62 3 10 chr11 10689631 10689940 -140093613 - AluY SINE Alu -1 310 4 2362 143 33 21 chr11 10690047 10690475 -140093078 + Tigger2a DNA MER2_type 1 433 -1 29 78 0 0 chr11 10690498 10690562 -140092991 + AT_rich Low_complexity Low_complexity 1 64 0 225 279 0 0 chr11 10690571 10690632 -140092921 - L1P1 LINE L1 -397 5758 5698 850 227 0 0 chr11 10690729 10690883 -140092670 + FRAM SINE Alu 1 154 -12 891 231 40 27 chr11 10690883 10691100 -140092453 + MIR SINE MIR 15 236 -26 303 332 48 48 chr11 10691268 10691518 -140092035 + MLT1K LTR MaLR 230 479 -109 377 276 10 0 chr11 10691521 10691619 -140091934 - L1ME LINE L1 -511 5610 5512 182 351 152 12 chr11 10693112 10693283 -140090270 + L2 LINE L2 2426 2620 -694 369 259 114 11 chr11 10693290 10693519 -140090034 - MLT1J LTR MaLR -4 507 211 321 47 0 0 chr11 10693519 10693562 -140089991 + (TTTAA)n Simple_repeat Simple_repeat 3 45 0 1930 130 7 18 chr11 10693562 10693846 -140089707 - AluSx SINE Alu -29 283 3 225 94 0 0 chr11 10693950 10693982 -140089571 + (CAT)n Simple_repeat Simple_repeat 2 33 0 443 256 55 91 chr11 10694383 10694582 -140088971 + MIR SINE MIR 7 198 -64 1580 149 0 102 chr11 10694636 10694958 -140088595 + AluJb SINE Alu 2 290 -22 6505 69 8 3 chr11 10695200 10696055 -140087498 + L1PA7 LINE L1 5285 6143 -11 28 29 0 0 chr11 10696055 10696090 -140087463 + AT_rich Low_complexity Low_complexity 1 35 0 275 333 75 0 chr11 10696090 10696183 -140087370 + L2 LINE L2 3169 3268 -4 23 0 0 0 chr11 10697642 10697665 -140085888 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 10698006 10698029 -140085524 + AT_rich Low_complexity Low_complexity 1 23 0 2187 204 30 22 chr11 10698651 10699150 -140084403 - L1ME2 LINE L1 -146 6018 5516 3917 166 51 10 chr11 10700011 10700712 -140082841 - MER44D DNA MER2_type -3 602 1 555 146 0 10 chr11 10701248 10701351 -140082202 + L1MB2 LINE L1 5394 5495 -676 1018 116 0 7 chr11 10701354 10701500 -140082053 + AluSq/x SINE Alu 1 145 -167 2366 84 3 6 chr11 10701500 10701811 -140081742 + AluSg SINE Alu 1 310 0 3350 174 34 25 chr11 10701813 10702487 -140081066 + L1MB2 LINE L1 5491 6170 -1 408 276 39 31 chr11 10702490 10702617 -140080936 - MER5B DNA MER1_type -50 128 1 181 87 22 43 chr11 10703470 10703516 -140080037 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 22 70 0 0 chr11 10703831 10703874 -140079679 + AT_rich Low_complexity Low_complexity 1 43 0 2305 106 0 0 chr11 10704958 10705261 -140078292 - AluSx SINE Alu -9 303 1 227 371 24 67 chr11 10705703 10705913 -140077640 - L2 LINE L2 -420 2894 2694 2485 59 0 10 chr11 10706228 10706535 -140077018 - AluY SINE Alu -7 304 1 238 254 48 0 chr11 10706621 10706684 -140076869 - HsTC2 DNA Tc2 -1816 82 17 269 259 73 88 chr11 10707399 10707673 -140075880 + L1MEd LINE L1 569 838 -5281 453 276 32 40 chr11 10707897 10708147 -140075406 + L1MEd LINE L1 1010 1257 -4862 815 230 55 32 chr11 10708171 10708388 -140075165 - MIR SINE MIR 0 262 41 372 375 7 28 chr11 10708756 10708900 -140074653 + L2 LINE L2 3132 3272 0 28 0 0 0 chr11 10709013 10709041 -140074512 + AT_rich Low_complexity Low_complexity 1 28 0 1894 164 0 0 chr11 10709127 10709432 -140074121 + AluJo SINE Alu 1 305 -7 2416 122 8 19 chr11 10709834 10710202 -140073351 - THE1B LTR MaLR 0 364 1 2180 117 0 3 chr11 10710527 10710827 -140072726 - AluSx SINE Alu -13 299 1 23 33 0 0 chr11 10711214 10711244 -140072309 + AT_rich Low_complexity Low_complexity 1 30 0 2793 13 0 0 chr11 10713597 10713904 -140069649 + AluY SINE Alu 1 307 -4 2558 230 56 42 chr11 10714339 10714516 -140069037 - L1ME1 LINE L1 -47 6119 5946 1436 226 81 25 chr11 10714516 10714958 -140068595 + MLT1C LTR MaLR 1 467 0 2558 230 56 42 chr11 10714958 10715771 -140067782 - L1ME1 LINE L1 -220 5946 5114 2037 104 3 16 chr11 10715771 10716078 -140067475 - AluSx SINE Alu -9 303 1 2558 230 56 42 chr11 10716078 10716153 -140067400 - L1ME1 LINE L1 -1052 5114 5042 333 217 41 152 chr11 10716180 10716220 -140067333 - L1ME1 LINE L1 -10 6156 6113 1032 144 0 0 chr11 10716220 10716380 -140067173 + L1PA16 LINE L1 5988 6147 -19 333 217 41 152 chr11 10716380 10716629 -140066924 - L1ME1 LINE L1 -53 6113 5899 302 326 39 54 chr11 10716688 10716817 -140066736 - LTR67 LTR ERVL -386 171 45 964 258 32 0 chr11 10717272 10717520 -140066033 + L1M4 LINE L1 3584 3839 -2307 443 156 0 0 chr11 10717581 10717658 -140065895 + L1M4b LINE L1 95 171 -6688 2621 182 53 0 chr11 10717659 10718131 -140065422 + L1M4b LINE L1 595 1091 -5868 586 259 35 6 chr11 10718133 10718307 -140065246 + L1 LINE L1 2685 2863 -3283 1506 197 3 23 chr11 10718318 10718623 -140064930 - AluJo SINE Alu -13 299 1 10133 108 29 25 chr11 10718630 10720384 -140063169 - HUERS-P1 LTR ERV1 -1327 5271 3060 9505 101 13 67 chr11 10720371 10720729 -140062824 - HUERS-P1 LTR ERV1 -4659 1604 1228 * 297 0 0 0 chr11 10720729 10720762 -140062791 + (CA)n Simple_repeat Simple_repeat 2 34 0 9505 101 13 67 chr11 10720762 10722099 -140061454 - HUERS-P1 LTR ERV1 -5035 1228 1 422 162 0 0 chr11 10722099 10722167 -140061386 - LTR8 LTR ERV1 0 691 624 616 125 0 0 chr11 10722269 10722365 -140061188 + Tigger2 DNA MER2_type 649 744 -1974 1010 156 147 0 chr11 10722430 10722501 -140061052 + Tigger2 DNA MER2_type 2462 2521 -197 450 0 0 0 chr11 10722501 10722551 -140061002 + (TA)n Simple_repeat Simple_repeat 1 50 0 1010 156 147 0 chr11 10722551 10722703 -140060850 + Tigger2 DNA MER2_type 2521 2718 0 24 32 0 0 chr11 10722983 10723014 -140060539 + AT_rich Low_complexity Low_complexity 1 31 0 850 85 78 0 chr11 10723069 10723198 -140060355 - MER85 DNA T2_type 0 139 1 2754 248 42 45 chr11 10723327 10724358 -140059195 - L1ME LINE L1 -5041 1029 2 2175 115 20 7 chr11 10724533 10724829 -140058724 + AluSx SINE Alu 1 300 -12 388 307 67 105 chr11 10724829 10725543 -140058010 - L2 LINE L2 -107 3165 2456 2458 109 3 35 chr11 10725546 10725921 -140057632 + THE1B LTR MaLR 2 364 0 10527 98 32 38 chr11 10725921 10727511 -140056042 + THE1B-int LTR MaLR 1 1580 0 2400 98 0 70 chr11 10727514 10727751 -140055802 + THE1B LTR MaLR 4 205 -159 2075 121 10 14 chr11 10727751 10728048 -140055505 + AluSx SINE Alu 1 296 -16 2400 98 0 70 chr11 10728048 10728198 -140055355 + THE1B LTR MaLR 205 364 0 244 287 57 25 chr11 10728710 10728832 -140054721 - HAL1b LINE L1 -438 910 785 238 305 0 0 chr11 10728885 10728944 -140054609 - HAL1b LINE L1 -447 901 843 2185 105 0 0 chr11 10729078 10729364 -140054189 - AluSx SINE Alu -26 286 1 296 269 93 83 chr11 10729495 10729688 -140053865 + L3 LINE CR1 1219 1413 -164 322 258 206 7 chr11 10730103 10730258 -140053295 - L2 LINE L2 -542 2772 2587 807 129 0 0 chr11 10730312 10730428 -140053125 - AluJb SINE Alu -12 300 185 2293 97 0 0 chr11 10731302 10731611 -140051942 - AluY SINE Alu -2 309 1 1097 162 65 51 chr11 10731647 10731863 -140051690 + MER20 DNA MER1_type 1 219 0 466 347 50 8 chr11 10732279 10732636 -140050917 + ERVL LTR ERVL 869 1240 -4524 2340 86 3 0 chr11 10732891 10733183 -140050370 - AluSc SINE Alu -16 293 1 1750 321 83 48 chr11 10733401 10734658 -140048895 + ERVL LTR ERVL 1800 3099 -2665 2306 102 0 3 chr11 10734917 10735222 -140048331 - AluSq SINE Alu -9 304 1 743 261 74 110 chr11 10735359 10735610 -140047943 + MLT1J LTR MaLR 3 227 -284 1846 156 0 31 chr11 10735610 10735930 -140047623 - AluJb SINE Alu -2 310 1 743 261 74 110 chr11 10735930 10736206 -140047347 + MLT1J LTR MaLR 227 511 0 192 380 8 25 chr11 10736206 10736327 -140047226 - L2 LINE L2 -873 2441 2323 453 265 184 14 chr11 10737750 10737897 -140045656 - MIR3 SINE MIR -16 192 21 3227 199 88 53 chr11 10738563 10740032 -140043521 - L1MDb LINE L1 -4487 1919 407 2321 275 39 2 chr11 10740005 10740627 -140042926 - L1MDb LINE L1 -5753 656 12 * 628 111 10 0 chr11 10740645 10740744 -140042809 - L1MB7 LINE L1 -15 6169 6070 204 40 0 0 chr11 10740744 10740769 -140042784 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1629 123 0 8 chr11 10740778 10741030 -140042523 - L1PA10 LINE L1 -11 6157 5908 1372 144 35 42 chr11 10741031 10741283 -140042270 - L1MB7 LINE L1 -106 6078 5827 2081 89 3 73 chr11 10741283 10741598 -140041955 - AluY SINE Alu -18 293 1 1372 144 35 42 chr11 10741598 10741657 -140041896 - L1MB7 LINE L1 -357 5827 5769 623 241 85 66 chr11 10741648 10743130 -140040423 - L1MEc LINE L1 -4760 1636 36 * 2373 57 0 10 chr11 10743153 10743449 -140040104 - AluY SINE Alu -18 293 1 292 355 33 44 chr11 10743461 10743734 -140039819 - L2 LINE L2 -540 2774 2505 243 132 0 0 chr11 10744068 10744106 -140039447 - Alu SINE Alu -9 292 255 1064 42 0 0 chr11 10744109 10744227 -140039326 - AluSq/x SINE Alu -182 130 13 310 328 178 35 chr11 10745283 10745621 -140037932 + L3 LINE CR1 726 1111 -466 550 256 83 22 chr11 10745645 10745825 -140037728 - MIR SINE MIR -56 206 16 343 296 0 0 chr11 10745886 10745967 -140037586 - FRAM/FAM SINE Alu -88 78 1 840 116 6 110 chr11 10745968 10746141 -140037412 - L1M3 LINE L1 -500 5671 5517 855 173 105 0 chr11 10746144 10746306 -140037247 - AluJo SINE Alu -133 179 1 13143 129 59 19 chr11 10746351 10748675 -140034878 + Tigger1 DNA MER2_type 1 2418 0 334 284 45 0 chr11 10748912 10749000 -140034553 + L1ME LINE L1 5666 5757 -364 183 42 0 0 chr11 10749090 10749114 -140034439 + (TA)n Simple_repeat Simple_repeat 2 25 0 383 157 148 17 chr11 10749142 10749257 -140034296 + L1ME4a LINE L1 5989 6118 -3 1883 151 11 0 chr11 10749270 10749555 -140033998 + AluJb SINE Alu 1 288 -24 201 205 0 121 chr11 10749723 10749806 -140033747 - L2 LINE L2 -4 3268 3196 345 333 42 0 chr11 10749893 10749989 -140033564 + L2 LINE L2 3121 3220 -52 855 202 5 31 chr11 10750663 10750856 -140032697 + MER20 DNA MER1_type 32 219 0 2157 128 0 0 chr11 10751138 10751428 -140032125 + AluSx SINE Alu 1 290 -22 1322 201 58 15 chr11 10751465 10751794 -140031759 + MER2 DNA MER2_type 2 344 0 2463 60 7 0 chr11 10752297 10752597 -140030956 + AluY SINE Alu 1 302 -9 771 262 62 9 chr11 10753167 10753377 -140030176 + MIR SINE MIR 4 224 -38 376 349 0 0 chr11 10754913 10755022 -140028531 - MIR SINE MIR -68 140 32 2232 102 3 3 chr11 10755783 10756078 -140027475 - AluSp SINE Alu -18 295 1 274 341 16 0 chr11 10756637 10756763 -140026790 + L3 LINE CR1 735 862 -715 357 256 7 66 chr11 10758110 10758247 -140025306 - MLT1J1 LTR MaLR 0 446 318 688 238 150 35 chr11 10758269 10758555 -140024998 - LTR36 LTR ERV1 0 611 293 338 75 60 0 chr11 10758620 10758687 -140024866 + GA-rich Low_complexity Low_complexity 2 72 0 596 269 56 15 chr11 10758776 10758973 -140024580 - MLT1J2 LTR MaLR -245 205 1 1398 230 104 47 chr11 10759057 10759390 -140024163 + MER21B LTR ERV1 1 370 -493 1539 185 20 30 chr11 10759390 10759692 -140023861 - AluJo SINE Alu -13 299 1 1398 230 104 47 chr11 10759692 10759828 -140023725 + MER21B LTR ERV1 370 497 -366 306 263 0 42 chr11 10760098 10760216 -140023337 + L1MC/D LINE L1 5720 5832 -1976 2216 153 8 99 chr11 10760216 10760330 -140023223 + L1MB2 LINE L1 5375 5498 -685 773 213 7 13 chr11 10760330 10760485 -140023068 + FRAM SINE Alu 1 154 -12 2216 153 8 99 chr11 10760485 10760893 -140022660 + L1MB2 LINE L1 5498 5849 -334 1654 140 12 43 chr11 10760931 10760993 -140022560 + L1MB2 LINE L1 5849 5911 -260 1838 91 0 0 chr11 10760993 10761234 -140022319 + AluY SINE Alu 71 311 0 1654 140 12 43 chr11 10761234 10761499 -140022054 + L1MB2 LINE L1 5911 6166 -5 652 210 57 17 chr11 10761572 10761748 -140021805 + L1M4 LINE L1 4676 4858 -1288 2088 165 21 35 chr11 10761811 10762235 -140021318 - L1MA5 LINE L1 0 6300 5883 855 196 80 9 chr11 10762246 10762471 -140021082 + L1M4 LINE L1 4856 5096 -1050 1258 146 0 101 chr11 10762825 10762878 -140020675 + AluJb SINE Alu 83 140 -172 2357 69 3 0 chr11 10762878 10763167 -140020386 + AluSc SINE Alu 1 290 -19 241 25 0 50 chr11 10763173 10763213 -140020340 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1258 146 0 101 chr11 10763213 10763399 -140020154 + AluJb SINE Alu 145 304 -8 210 259 0 0 chr11 10763532 10763590 -140019963 + (TA)n Simple_repeat Simple_repeat 1 58 0 433 264 136 13 chr11 10864784 10864939 -139918614 - MIR SINE MIR -72 190 17 432 206 112 9 chr11 10865162 10865269 -139918284 + L2 LINE L2 3196 3313 0 4727 199 30 8 chr11 10865571 10866518 -139917035 - L1P LINE L1 -5169 977 11 272 282 111 8 chr11 10867198 10867315 -139916238 + L2 LINE L2 3138 3266 -6 759 303 194 27 chr11 10868654 10868860 -139914693 + L2 LINE L2 2216 2386 -928 8437 52 1 0 chr11 10868860 10869825 -139913728 + LTR5 LTR ERVK 1 966 -3 759 303 194 27 chr11 10869825 10870241 -139913312 + L2 LINE L2 2386 2942 -372 23 0 0 0 chr11 10870420 10870443 -139913110 + AT_rich Low_complexity Low_complexity 1 23 0 614 271 96 102 chr11 10870645 10870985 -139912568 - L1ME3 LINE L1 -309 5830 5494 2917 155 9 60 chr11 10870991 10871527 -139912026 + MLT2B2 LTR ERVL 7 515 0 614 271 96 102 chr11 10871527 10871731 -139911822 - L1ME3 LINE L1 -645 5494 5290 360 0 0 0 chr11 10871906 10871946 -139911607 + (TG)n Simple_repeat Simple_repeat 2 41 0 1387 158 18 4 chr11 10871947 10872175 -139911378 - AluJo SINE Alu -39 273 43 600 153 0 9 chr11 10872275 10872386 -139911167 + LTR5 LTR ERVK 858 967 -2 317 328 146 24 chr11 10872537 10872918 -139910635 + L2 LINE L2 2638 3079 -193 360 64 0 0 chr11 10873207 10873254 -139910299 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 237 139 125 14 chr11 10874982 10875054 -139908499 + MIR3 SINE MIR 5 84 -124 207 336 66 0 chr11 10876610 10876732 -139906821 - L2 LINE L2 -1 3271 3142 1656 155 8 4 chr11 10876927 10877185 -139906368 - AluJo SINE Alu -27 285 27 7451 42 3 0 chr11 10878147 10879218 -139904335 - L1PA4 LINE L1 -4 6151 5082 26 0 0 0 chr11 10879288 10879314 -139904239 + AT_rich Low_complexity Low_complexity 1 26 0 1040 92 8 0 chr11 10879384 10879515 -139904038 + AluSp SINE Alu 39 170 -143 234 0 0 0 chr11 10879850 10879876 -139903677 + (T)n Simple_repeat Simple_repeat 1 26 0 206 301 26 59 chr11 10879990 10880143 -139903410 - MIR SINE MIR -43 219 72 591 210 59 41 chr11 10880202 10880399 -139903154 + MIR SINE MIR 64 262 0 1862 122 59 0 chr11 10880406 10880676 -139902877 - AluSg SINE Alu -24 286 1 1577 214 40 81 chr11 10881114 10881329 -139902224 + HAL1b LINE L1 794 1016 -332 1805 190 0 0 chr11 10881329 10881629 -139901924 + AluJb SINE Alu 1 300 -12 1577 214 40 81 chr11 10881629 10881992 -139901561 + HAL1b LINE L1 1016 1348 0 21 36 0 0 chr11 10882805 10882833 -139900720 + AT_rich Low_complexity Low_complexity 1 28 0 1763 207 36 66 chr11 10884170 10884425 -139899128 - LTR16C LTR ERVL -2 489 253 2362 104 0 0 chr11 10884425 10884722 -139898831 - AluSx SINE Alu -15 297 1 1763 207 36 66 chr11 10884722 10884935 -139898618 - LTR16C LTR ERVL -238 253 35 1994 146 3 19 chr11 10885064 10885372 -139898181 - AluJb SINE Alu -9 303 1 670 264 31 22 chr11 10885647 10885874 -139897679 + L1M4 LINE L1 4616 4844 -1302 249 118 0 0 chr11 10885905 10885939 -139897614 - U2 snRNA snRNA -154 34 1 354 290 47 51 chr11 10886013 10886289 -139897264 + L1M4 LINE L1 4931 5205 -941 2290 112 0 3 chr11 10886879 10887183 -139896370 + AluSx SINE Alu 1 303 -9 2398 84 3 0 chr11 10887396 10887693 -139895860 + AluSx SINE Alu 1 298 -14 1283 125 22 5 chr11 10887913 10888097 -139895456 + AluSg/x SINE Alu 111 297 -15 1665 169 54 30 chr11 10888103 10888435 -139895118 - THE1C LTR MaLR -35 340 1 309 176 20 0 chr11 10888435 10888483 -139895070 - AluSp SINE Alu -121 182 134 425 137 0 68 chr11 10888491 10888542 -139895011 - MLT1B LTR MaLR -318 72 26 1745 153 85 23 chr11 10888542 10888895 -139894658 + THE1C LTR MaLR 1 375 0 425 137 0 68 chr11 10888895 10888916 -139894637 - MLT1B LTR MaLR -364 26 5 297 75 0 0 chr11 10888972 10889012 -139894541 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 2193 226 48 35 chr11 10889158 10889737 -139893816 - MLT1E LTR MaLR -2 591 5 220 353 58 14 chr11 10890141 10890280 -139893273 + L2 LINE L2 3169 3313 0 1893 177 3 0 chr11 10890282 10890582 -139892971 + AluJo SINE Alu 1 301 -11 266 224 15 30 chr11 10890981 10891048 -139892505 - L2 LINE L2 0 3272 3207 2003 167 0 0 chr11 10891167 10891473 -139892080 + AluJb SINE Alu 1 306 -6 288 0 0 0 chr11 10891473 10891505 -139892048 + (TA)n Simple_repeat Simple_repeat 2 33 0 1577 171 0 32 chr11 10891538 10891819 -139891734 - AluJo SINE Alu -40 272 1 839 233 198 30 chr11 10891819 10892218 -139891335 + L3 LINE CR1 636 1101 -476 374 332 82 26 chr11 10893324 10893556 -139889997 - MLT1L LTR MaLR 0 615 371 2596 51 0 0 chr11 10898690 10898986 -139884567 + AluY SINE Alu 1 296 -15 671 164 0 64 chr11 10899058 10899198 -139884355 - FLAM_C SINE Alu 0 133 3 600 260 75 35 chr11 10900552 10900779 -139882774 - MIR SINE MIR -12 250 15 363 96 0 0 chr11 10901187 10901239 -139882314 + (TG)n Simple_repeat Simple_repeat 1 52 0 196 236 0 83 chr11 10901778 10901850 -139881703 + L2 LINE L2 3248 3313 0 1676 179 101 31 chr11 10901993 10902351 -139881202 - MLT1B LTR MaLR -3 387 5 291 273 8 83 chr11 10902812 10902933 -139880620 - MER5B DNA MER1_type -66 112 1 412 286 70 36 chr11 10904057 10904358 -139879195 + L1MC5 LINE L1 7451 7761 -200 235 127 32 48 chr11 10904392 10904455 -139879098 + A-rich Low_complexity Low_complexity 4 65 0 359 254 0 25 chr11 10904502 10904620 -139878933 + L1MC5 LINE L1 7806 7920 -41 23 54 0 0 chr11 10904687 10904724 -139878829 + AT_rich Low_complexity Low_complexity 1 37 0 1587 129 0 0 chr11 10905096 10905313 -139878240 + AluJb SINE Alu 87 303 -9 21 36 0 0 chr11 10905448 10905476 -139878077 + AT_rich Low_complexity Low_complexity 1 28 0 1764 148 16 0 chr11 10905682 10905938 -139877615 + AluJo SINE Alu 22 281 -31 215 59 0 29 chr11 10905944 10905978 -139877575 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 2016 169 5 63 chr11 10906087 10906513 -139877040 + MER57A LTR ERV1 1 401 -2 698 252 191 36 chr11 10906521 10906830 -139876723 + L1MEd LINE L1 3 359 -5760 796 253 77 37 chr11 10906847 10907144 -139876409 + L1MEd LINE L1 515 823 -5296 370 259 79 79 chr11 10907238 10907282 -139876271 + L1ME LINE L1 5477 5520 -601 2346 104 0 3 chr11 10907282 10907581 -139875972 - AluSq SINE Alu -15 298 1 370 259 79 79 chr11 10907581 10907725 -139875828 + L1ME LINE L1 5519 5665 -456 1270 254 105 32 chr11 10907843 10908434 -139875119 + L1MEd LINE L1 966 1599 -4530 730 174 0 42 chr11 10908457 10908601 -139874952 - AluJo SINE Alu -174 138 1 831 236 117 34 chr11 10908618 10909063 -139874490 + L1MEd LINE L1 1647 2128 -4182 907 108 31 8 chr11 10909064 10909194 -139874359 + AluSq/x SINE Alu 1 133 -179 2204 128 0 16 chr11 10909206 10909518 -139874035 + AluSg SINE Alu 1 307 -3 210 37 0 0 chr11 10909521 10909548 -139874005 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3186 221 43 66 chr11 10909548 10909722 -139873831 + L1MEd LINE L1 2104 2280 -3849 1906 155 0 32 chr11 10909722 10910038 -139873515 + AluJb SINE Alu 1 306 -6 3186 221 43 66 chr11 10910038 10910732 -139872821 + L1MEd LINE L1 2280 2988 -3141 2027 129 4 0 chr11 10910732 10911049 -139872504 + AluSx SINE Alu 1 318 0 3186 221 43 66 chr11 10911049 10911776 -139871777 + L1MEd LINE L1 2988 3825 -2304 23 0 0 0 chr11 10912153 10912176 -139871377 + AT_rich Low_complexity Low_complexity 1 23 0 1203 273 44 9 chr11 10912232 10912687 -139870866 - L1MC4a LINE L1 -1788 6020 5550 1981 207 78 51 chr11 10912720 10913438 -139870115 + MER21B LTR ERV1 15 809 -54 261 273 68 23 chr11 10913480 10913612 -139869941 - L1MC4a LINE L1 -2267 5541 5404 * 439 317 128 29 chr11 10913601 10914177 -139869376 - L1MC4a LINE L1 -1825 4321 3669 537 16 0 0 chr11 10914177 10914239 -139869314 + (TG)n Simple_repeat Simple_repeat 1 62 0 439 317 128 29 chr11 10914239 10914319 -139869234 - L1MC4a LINE L1 -2477 3669 3598 639 285 65 5 chr11 10915252 10915466 -139868087 + MIR SINE MIR 29 255 -7 2616 111 3 6 chr11 10915466 10915828 -139867725 + THE1B LTR MaLR 1 361 -3 228 302 43 29 chr11 10915993 10916132 -139867421 + L2 LINE L2 2919 3059 -213 2313 117 0 0 chr11 10916328 10916637 -139866916 - AluSx SINE Alu -3 309 1 825 272 128 13 chr11 10917618 10917931 -139865622 + MLT1I LTR MaLR 7 355 -54 1105 213 173 16 chr11 10918246 10918658 -139864895 + MLT1F LTR MaLR 1 541 -1 1337 125 91 30 chr11 10919361 10919541 -139864012 + L1MA8 LINE L1 5976 6182 -109 8922 108 16 4 chr11 10919541 10920823 -139862730 - HSMAR2 DNA Mariner -4 1298 1 1337 125 91 30 chr11 10920823 10920938 -139862615 + L1MA8 LINE L1 6182 6289 -2 219 254 99 0 chr11 10921077 10921148 -139862405 - MIR SINE MIR -65 197 120 640 124 18 44 chr11 10921585 10921698 -139861855 + L1MB2 LINE L1 6060 6169 -2 252 344 0 0 chr11 10922036 10922126 -139861427 - L1MC4 LINE L1 -1339 6703 6614 235 303 0 22 chr11 10922137 10922226 -139861327 + L1MC4 LINE L1 6617 6703 -1339 352 307 100 0 chr11 10923420 10923560 -139859993 - MIR3 SINE MIR -22 186 33 225 0 0 0 chr11 10923954 10923979 -139859574 + (T)n Simple_repeat Simple_repeat 1 25 0 591 210 59 41 chr11 10924305 10924502 -139859051 + MIR SINE MIR 64 262 0 990 149 0 0 chr11 10924509 10924657 -139858896 - AluSg/x SINE Alu -24 288 141 1775 127 16 65 chr11 10924781 10925104 -139858449 + MLT1B LTR MaLR 84 390 0 420 312 0 8 chr11 10926094 10926219 -139857334 - L2 LINE L2 -278 2994 2871 2226 135 32 46 chr11 10926327 10926490 -139857063 - L1MC3 LINE L1 0 7785 7621 1879 183 0 0 chr11 10926490 10926790 -139856763 - AluJb SINE Alu -12 300 1 2226 135 32 46 chr11 10926790 10927064 -139856489 - L1MC3 LINE L1 -164 7621 7354 261 291 41 76 chr11 10927148 10927320 -139856233 + L2 LINE L2 2708 2873 -441 1204 176 0 82 chr11 10927338 10927616 -139855937 - AluJo SINE Alu -4 308 54 854 138 8 0 chr11 10927616 10927739 -139855814 + AluJb SINE Alu 1 124 -188 5590 37 0 0 chr11 10927742 10928755 -139854798 - L1PA4 LINE L1 -410 5745 4733 3331 33 10 0 chr11 10928755 10929143 -139854410 + L1PA4 LINE L1 5756 6150 -5 885 210 34 0 chr11 10929148 10929324 -139854229 + AluJb SINE Alu 131 312 0 385 176 47 3 chr11 10929325 10929406 -139854147 - AluJ/FLAM SINE Alu -240 62 1 529 309 72 8 chr11 10929464 10929729 -139853824 - L2 LINE L2 -776 2538 2257 848 200 19 0 chr11 10930155 10930310 -139853243 - FRAM SINE Alu -13 163 6 1660 177 20 23 chr11 10930356 10930655 -139852898 - AluJb SINE Alu -14 298 1 33449 97 12 14 chr11 10930909 10935708 -139847845 + L1P LINE L1 11 4797 -1349 232 169 0 31 chr11 10935695 10935760 -139847793 + L1MC4 LINE L1 6640 6702 -1340 * 333 207 98 0 chr11 10935769 10935851 -139847702 + L1MC4 LINE L1 6614 6703 -1339 216 97 0 0 chr11 10935851 10935882 -139847671 + (TATG)n Simple_repeat Simple_repeat 1 31 0 878 172 53 13 chr11 10935882 10936012 -139847541 + L1PA6 LINE L1 4794 4917 -1229 360 64 0 0 chr11 10936012 10936059 -139847494 + (TATG)n Simple_repeat Simple_repeat 2 48 0 6719 59 29 5 chr11 10936061 10937386 -139846167 + L1PA6 LINE L1 4799 6145 -9 878 172 53 13 chr11 10937386 10937499 -139846054 + L1PA6 LINE L1 4917 5061 -1085 374 277 63 20 chr11 10937523 10937716 -139845837 + MLT1L LTR MaLR 232 531 -84 1076 169 0 0 chr11 10937733 10937899 -139845654 - AluJ SINE Alu -13 299 134 388 304 8 24 chr11 10937927 10938052 -139845501 + MER5B DNA MER1_type 2 124 -54 774 242 0 0 chr11 10938053 10938202 -139845351 - AluJo SINE Alu -27 285 137 277 239 0 0 chr11 10938202 10938269 -139845284 + MER5B DNA MER1_type 112 178 0 745 248 129 0 chr11 10939210 10939420 -139844133 + MIR SINE MIR 26 262 0 4906 254 41 11 chr11 10939456 10940839 -139842714 + HERVL LTR ERVL 3563 5086 -678 22 35 0 0 chr11 10941432 10941461 -139842092 + AT_rich Low_complexity Low_complexity 1 29 0 433 264 136 13 chr11 10941585 10941740 -139841813 - MIR SINE MIR -72 190 17 441 206 112 9 chr11 10941963 10942070 -139841483 + L2 LINE L2 3196 3313 0 246 105 0 0 chr11 10942220 10942258 -139841295 + (GA)n Simple_repeat Simple_repeat 2 39 0 1521 85 27 0 chr11 10942356 10942579 -139840974 - L1MA8 LINE L1 -7 6284 6056 258 323 19 77 chr11 10943475 10943630 -139839923 + L2 LINE L2 3127 3272 0 24 0 0 0 chr11 10943977 10944001 -139839552 + AT_rich Low_complexity Low_complexity 1 24 0 640 152 125 0 chr11 10944001 10944113 -139839440 - AluJo SINE Alu -185 127 2 1847 176 0 22 chr11 10944491 10944964 -139838589 - AluJb SINE Alu 0 466 1 1953 154 17 0 chr11 10945043 10945335 -139838218 - AluJb SINE Alu -15 297 1 929 251 103 48 chr11 10946820 10947058 -139836495 + MLT1G LTR MaLR 4 262 -333 1698 236 137 42 chr11 10947058 10947600 -139835953 - MLT1E LTR MaLR 0 593 1 929 251 103 48 chr11 10947600 10947652 -139835901 + MLT1G LTR MaLR 262 310 -285 1081 234 5 5 chr11 10947661 10947866 -139835687 + MLT1G LTR MaLR 346 550 -40 206 323 20 20 chr11 10949472 10949571 -139833982 + MIR SINE MIR 43 141 -67 276 211 0 0 chr11 10950318 10950370 -139833183 + L2 LINE L2 3219 3270 -2 562 281 80 28 chr11 10950575 10950863 -139832690 + L1ME4a LINE L1 5600 5905 -216 449 51 0 0 chr11 10950971 10951030 -139832523 + Alu SINE Alu 243 301 -10 1027 288 94 15 chr11 10952008 10952546 -139831007 + L2 LINE L2 2725 3313 0 328 111 0 0 chr11 10952912 10952957 -139830596 - MLT2C1 LTR ERVL -2 518 474 221 180 80 0 chr11 10953015 10953065 -139830488 + GA-rich Low_complexity Low_complexity 2 55 0 1720 171 48 12 chr11 10953065 10953399 -139830154 - MLT2C1 LTR ERVL -48 349 4 1187 280 138 6 chr11 10953711 10954533 -139829020 - L2 LINE L2 -81 3232 2302 2570 111 8 13 chr11 10954940 10955317 -139828236 - THE1C LTR MaLR 0 375 1 182 361 55 6 chr11 10955701 10955884 -139827669 - L2 LINE L2 -499 2815 2624 1008 198 5 40 chr11 10956800 10957002 -139826551 - MER21B LTR ERV1 -373 490 296 203 213 43 0 chr11 10957136 10957183 -139826370 + (TATG)n Simple_repeat Simple_repeat 3 51 0 3136 176 55 105 chr11 10957232 10958157 -139825396 - L1MA10 LINE L1 -99 6235 5357 219 253 165 0 chr11 10958544 10958623 -139824930 + MIR SINE MIR 64 155 -107 553 225 9 0 chr11 10958945 10959056 -139824497 - L2 LINE L2 -2 3311 3200 275 289 10 10 chr11 10959644 10959741 -139823812 + MIR SINE MIR 41 137 -71 991 271 86 21 chr11 10960371 10960754 -139822799 + MLT1K LTR MaLR 181 588 0 1897 172 30 9 chr11 10961402 10961552 -139822001 + MER2 DNA MER2_type 1 146 -199 7221 114 46 35 chr11 10961552 10962769 -139820784 + Tigger3b DNA MER2_type 1 1231 0 1897 172 30 9 chr11 10962769 10962955 -139820598 + MER2 DNA MER2_type 146 344 -1 2347 112 0 0 chr11 10962976 10963281 -139820272 + AluSq SINE Alu 1 305 -8 30 93 0 0 chr11 10964320 10964406 -139819147 + AT_rich Low_complexity Low_complexity 1 86 0 796 100 0 17 chr11 10964538 10964658 -139818895 - L1PB4 LINE L1 -2 6154 6037 1463 192 12 51 chr11 10965116 10965449 -139818104 + L1ME2 LINE L1 5842 6161 -3 1332 198 23 0 chr11 10966180 10966438 -139817115 - MER58B DNA MER1_type 0 341 78 1550 108 0 0 chr11 10966440 10966634 -139816919 - AluSg/x SINE Alu -14 296 103 232 330 34 0 chr11 10966663 10966751 -139816802 - MER58B DNA MER1_type -250 91 1 238 291 27 63 chr11 10968073 10968191 -139815362 - MIR SINE MIR -66 142 37 329 290 97 43 chr11 10968346 10968532 -139815021 + MIR3 SINE MIR 3 198 -10 902 284 81 50 chr11 10969000 10969603 -139813950 - HAL1 LINE L1 -1885 622 1 2211 288 83 38 chr11 10969624 10970541 -139813012 + L2 LINE L2 1853 2727 -586 1096 217 159 0 chr11 10970541 10970799 -139812754 - AluJo SINE Alu -3 299 1 2211 288 83 38 chr11 10970799 10971052 -139812501 + L2 LINE L2 2727 2967 -346 1899 89 58 122 chr11 10971052 10971412 -139812141 - MER1B DNA MER1_type 0 337 1 2211 288 83 38 chr11 10971412 10971636 -139811917 + L2 LINE L2 2967 3313 0 2374 96 0 0 chr11 10972763 10973066 -139810487 - AluSc SINE Alu -6 303 1 1775 100 93 7 chr11 10973786 10974055 -139809498 + AluSx SINE Alu 1 292 -20 1544 186 24 17 chr11 10974144 10974435 -139809118 - AluJo SINE Alu -19 293 1 2147 92 43 0 chr11 10975720 10976002 -139807551 - AluSc SINE Alu -15 294 1 273 254 59 67 chr11 10976271 10976580 -139806973 - Charlie1 DNA MER1_type -1027 1734 1378 31565 105 25 55 chr11 10978013 10984336 -139799217 - L1PA7 LINE L1 -14 6140 12 267 281 45 0 chr11 10984349 10984438 -139799115 + MER112 DNA MER1_type 164 256 -4 499 207 121 35 chr11 10984929 10985103 -139798450 - ORSL DNA AcHobo -76 199 11 693 283 105 41 chr11 10985332 10985721 -139797832 - MLT1K LTR MaLR -10 578 165 192 194 129 16 chr11 10985989 10986051 -139797502 - MIR SINE MIR -69 193 125 180 308 0 0 chr11 10986060 10986112 -139797441 - MIR SINE MIR -15 247 196 237 268 7 80 chr11 10986139 10986277 -139797276 - LTR67 LTR ERVL -4 553 426 282 184 0 0 chr11 10986404 10986453 -139797100 - MLT1K LTR MaLR -339 249 201 1549 238 118 9 chr11 10986600 10987042 -139796511 - LTR33 LTR ERVL -31 490 1 466 314 7 7 chr11 10987053 10987193 -139796360 - MIR SINE MIR -118 144 5 778 280 71 4 chr11 10987789 10988028 -139795525 - MIR SINE MIR 0 262 8 396 194 71 51 chr11 10988380 10988478 -139795075 + MLT1J2 LTR MaLR 307 406 -44 3627 119 22 8 chr11 10988502 10989088 -139794465 - L1MA3 LINE L1 -2 6303 5710 8014 215 36 28 chr11 10989432 10991606 -139791947 + L1M4 LINE L1 2183 4374 -1772 7129 193 23 20 chr11 10991814 10994264 -139789289 + L1MB7 LINE L1 3709 6165 -19 1856 174 3 7 chr11 10994453 10994752 -139788801 + AluJb SINE Alu 15 312 0 2628 118 3 3 chr11 10995330 10995694 -139787859 - THE1B LTR MaLR 0 364 1 1210 228 55 78 chr11 10995969 10996610 -139786943 - L1M4 LINE L1 -2447 3699 3074 830 147 0 23 chr11 10996656 10996785 -139786768 - FLAM_C SINE Alu -17 126 1 325 195 0 122 chr11 10996786 10996828 -139786725 - L1M4 LINE L1 -3059 3087 3041 2227 113 3 0 chr11 10996828 10997130 -139786423 - AluSq SINE Alu -10 303 1 325 195 0 122 chr11 10997130 10997210 -139786343 - L1M4 LINE L1 -3105 3041 2980 254 257 119 0 chr11 10998029 10998130 -139785423 - L1ME4a LINE L1 -195 5926 5814 517 279 40 35 chr11 10999097 10999298 -139784255 + LTR33 LTR ERVL 320 521 0 298 265 111 8 chr11 11000338 11000455 -139783098 + L2 LINE L2 3138 3266 -6 243 295 0 0 chr11 11001090 11001151 -139782402 + MLT1J LTR MaLR 229 289 -222 2810 3 0 16 chr11 11001160 11001469 -139782084 - AluYb8 SINE Alu -14 304 1 430 214 152 45 chr11 11001533 11001711 -139781842 + MLT1J LTR MaLR 304 500 -11 481 202 40 8 chr11 11002355 11002479 -139781074 - L1MB4 LINE L1 0 6180 6053 23 33 0 0 chr11 11002485 11002515 -139781038 + AT_rich Low_complexity Low_complexity 1 30 0 521 98 24 0 chr11 11002515 11002597 -139780956 - L1PA16 LINE L1 -4 6162 6079 204 206 48 16 chr11 11004697 11004760 -139778793 + G-rich Low_complexity Low_complexity 3 67 0 2597 236 143 39 chr11 11004840 11005570 -139777983 + Charlie7 DNA MER1_type 32 931 -1681 2337 89 0 16 chr11 11005570 11005874 -139777679 + AluSx SINE Alu 1 299 -13 2597 236 143 39 chr11 11005874 11006311 -139777242 + Charlie7 DNA MER1_type 931 1321 -1291 677 296 126 22 chr11 11006389 11006747 -139776806 - Charlie7 DNA MER1_type -2217 395 1 2363 227 115 50 chr11 11006942 11007279 -139776274 + Charlie7 DNA MER1_type 1345 1659 -953 414 57 0 0 chr11 11007279 11007332 -139776221 + (CA)n Simple_repeat Simple_repeat 2 54 0 2363 227 115 50 chr11 11007332 11008111 -139775442 + Charlie7 DNA MER1_type 1659 2533 -79 207 291 97 63 chr11 11008268 11008856 -139774697 - L2 LINE L2 -828 2486 1879 432 0 0 0 chr11 11008901 11008949 -139774604 + (TG)n Simple_repeat Simple_repeat 2 49 0 324 0 0 0 chr11 11009003 11009039 -139774514 + (TG)n Simple_repeat Simple_repeat 2 37 0 27 73 0 0 chr11 11009543 11009598 -139773955 + GC_rich Low_complexity Low_complexity 1 55 0 197 211 35 0 chr11 11011252 11011309 -139772244 + L2 LINE L2 3255 3313 0 712 279 68 13 chr11 11011400 11011605 -139771948 - MIR SINE MIR -10 252 31 2334 104 0 3 chr11 11011605 11011914 -139771639 - AluSx SINE Alu -4 308 1 712 279 68 13 chr11 11011914 11011945 -139771608 - MIR SINE MIR -231 31 3 336 248 178 0 chr11 11012015 11012116 -139771437 - L2 LINE L2 0 3313 3195 2192 118 3 19 chr11 11012236 11012550 -139771003 - AluSc SINE Alu 0 309 1 578 156 91 65 chr11 11013112 11013266 -139770287 + MER103 DNA DNA 1 158 -8 1761 175 13 13 chr11 11015633 11015941 -139767612 - AluJb SINE Alu -4 308 1 1881 140 18 0 chr11 11016282 11016554 -139766999 + AluJb SINE Alu 6 282 -30 390 235 0 12 chr11 11016815 11016900 -139766653 - FLAM_A SINE Alu -27 106 23 312 178 0 96 chr11 11016888 11016961 -139766592 + AluJb SINE Alu 88 153 -149 * 372 224 84 19 chr11 11018048 11018155 -139765398 - MIR3 SINE MIR -6 202 89 191 250 17 0 chr11 11018438 11018498 -139765055 + MIR SINE MIR 2 62 -200 372 233 60 21 chr11 11018501 11018647 -139764906 + MIR SINE MIR 12 160 -63 363 81 70 0 chr11 11018677 11018763 -139764790 + (TA)n Simple_repeat Simple_repeat 1 92 0 1880 161 0 17 chr11 11018763 11019062 -139764491 - AluJb SINE Alu -18 294 1 2187 124 0 7 chr11 11019073 11019372 -139764181 - AluSx SINE Alu -15 297 1 247 196 0 0 chr11 11019407 11019458 -139764095 + GA-rich Low_complexity Low_complexity 2 52 0 537 278 124 51 chr11 11020751 11020883 -139762670 - L2 LINE L2 -30 3283 3162 1132 236 167 5 chr11 11020883 11021332 -139762221 - LTR33A LTR ERVL 0 523 2 537 278 124 51 chr11 11021332 11021698 -139761855 - L2 LINE L2 -151 3162 2749 707 213 46 51 chr11 11022648 11022845 -139760708 + MIR SINE MIR 64 259 -3 714 328 25 4 chr11 11022892 11023127 -139760426 - MIR SINE MIR -17 245 6 738 294 85 4 chr11 11023600 11023835 -139759718 + MIR SINE MIR 9 262 0 30647 98 18 61 chr11 11024088 11024643 -139758910 + L1PA7 LINE L1 12 589 -5565 2323 101 3 0 chr11 11024643 11024941 -139758612 + AluSq SINE Alu 1 299 -14 30647 98 18 61 chr11 11024941 11028421 -139755132 + L1PA7 LINE L1 589 3654 -2500 2815 3 0 3 chr11 11028421 11028721 -139754832 + AluYa5 SINE Alu 1 299 -12 30647 98 18 61 chr11 11028721 11031119 -139752434 + L1PA7 LINE L1 3654 6154 0 2034 146 0 0 chr11 11031385 11031679 -139751874 + AluSx SINE Alu 1 294 -18 1777 164 0 0 chr11 11031689 11031958 -139751595 + AluSx SINE Alu 39 307 -5 210 284 62 119 chr11 11032718 11032894 -139750659 + L2 LINE L2 3057 3222 -50 202 313 24 12 chr11 11033530 11033613 -139749940 + L3 LINE CR1 1305 1388 -189 2379 141 58 22 chr11 11033666 11034078 -139749475 - MSTA LTR MaLR 0 428 2 2057 213 87 9 chr11 11034244 11034775 -139748778 + MLT1E2 LTR MaLR 96 626 0 235 168 0 178 chr11 11035433 11035540 -139748013 - L2 LINE L2 -588 2726 2639 616 291 171 0 chr11 11035696 11035906 -139747647 - MIR SINE MIR -15 247 2 675 261 52 36 chr11 11038937 11039243 -139744310 - L1MC4a LINE L1 -1763 6045 5735 326 229 219 0 chr11 11040389 11040485 -139743068 + MIR SINE MIR 28 144 -118 3197 161 51 4 chr11 11040859 11041393 -139742160 - MER68 LTR ERV1 0 562 4 2007 137 3 44 chr11 11041858 11042173 -139741380 - AluJb SINE Alu -10 302 1 764 252 56 39 chr11 11042273 11042507 -139741046 + MIR SINE MIR 20 257 -5 264 283 164 45 chr11 11043369 11043546 -139740007 - MIR SINE MIR 0 262 65 683 237 97 43 chr11 11043832 11044111 -139739442 - L2 LINE L2 -1 3312 3019 1850 155 14 7 chr11 11044602 11044892 -139738661 - AluSx SINE Alu -20 292 1 298 259 98 27 chr11 11045472 11045584 -139737969 + L3 LINE CR1 1450 1569 -8 853 76 18 1 chr11 11047077 11047210 -139736343 - L1PA10 LINE L1 -196 5972 5855 1007 49 16 0 chr11 11047210 11047330 -139736223 + L1PA10 LINE L1 6042 6166 -2 2243 122 0 0 chr11 11049033 11049328 -139734225 - AluSq SINE Alu -18 295 1 275 225 10 4 chr11 11049687 11049803 -139733750 + MER117 DNA MER1_type 2 155 -42 1596 316 60 17 chr11 11050794 11051446 -139732107 - L2 LINE L2 -588 2726 2047 325 305 148 0 chr11 11051932 11052060 -139731493 - L2 LINE L2 -1 3312 3166 229 295 156 49 chr11 11052218 11052628 -139730925 - L2 LINE L2 -337 2977 2524 323 313 84 8 chr11 11053076 11053209 -139730344 + MIR SINE MIR 19 160 -65 3506 158 16 6 chr11 11053242 11053863 -139729690 + L1MB4 LINE L1 5554 6180 0 2360 97 0 3 chr11 11055264 11055562 -139727991 - AluSg1 SINE Alu -12 297 1 2109 115 33 13 chr11 11056886 11057190 -139726363 - AluSg SINE Alu 0 310 1 382 254 52 37 chr11 11057201 11057335 -139726218 + MIR SINE MIR 90 225 -37 206 274 32 0 chr11 11057946 11058008 -139725545 + (CATG)n Simple_repeat Simple_repeat 1 64 0 317 297 55 0 chr11 11058347 11058438 -139725115 - L2 LINE L2 -5 3308 3213 428 340 53 5 chr11 11058661 11058849 -139724704 + MIR3 SINE MIR 1 197 -11 450 325 143 51 chr11 11059390 11059818 -139723735 - L1ME4a LINE L1 0 6121 5655 218 283 0 0 chr11 11060314 11060360 -139723193 + polypyrimidine Low_complexity Low_complexity 4 49 0 377 239 107 50 chr11 11060811 11060970 -139722583 + MIR SINE MIR 65 232 -30 1214 190 145 21 chr11 11061163 11061536 -139722017 - Charlie1 DNA MER1_type 0 2761 2343 232 310 17 0 chr11 11061536 11061594 -139721959 - Charlie1 DNA MER1_type -2702 59 1 488 16 16 0 chr11 11061791 11061852 -139721701 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 180 366 76 8 chr11 11061911 11062042 -139721511 - L2 LINE L2 -1756 1558 1419 253 250 29 0 chr11 11062379 11062447 -139721106 - L2 LINE L2 -30 3242 3173 871 235 171 7 chr11 11062494 11062775 -139720778 + L2 LINE L2 2986 3312 -1 258 227 182 11 chr11 11064145 11064233 -139719320 + MIR3 SINE MIR 99 201 -7 230 229 62 0 chr11 11064370 11064418 -139719135 + MIR3 SINE MIR 152 202 -6 * 258 328 117 8 chr11 11064416 11064544 -139719009 - MIR3 SINE MIR -51 157 16 189 0 0 0 chr11 11064571 11064592 -139718961 + (TG)n Simple_repeat Simple_repeat 2 22 0 269 235 0 0 chr11 11064753 11064804 -139718749 + L2 LINE L2 3263 3313 0 2293 129 6 24 chr11 11068822 11069163 -139714390 + MER1B DNA MER1_type 2 336 -1 222 217 0 22 chr11 11070309 11070355 -139713198 - L3b LINE CR1 -10 1573 1529 30 0 0 0 chr11 11070427 11070457 -139713096 + AT_rich Low_complexity Low_complexity 1 30 0 183 288 75 12 chr11 11070710 11070790 -139712763 - MIR SINE MIR -118 144 60 2173 113 14 0 chr11 11071353 11071645 -139711908 - AluSx SINE Alu -10 302 7 315 207 83 33 chr11 11072796 11072917 -139710636 - HAL1 LINE L1 0 2507 2381 447 261 78 22 chr11 11073006 11073198 -139710355 - L1MC4a LINE L1 -325 5796 5682 4422 232 65 27 chr11 11073915 11075452 -139708101 + L1ME4a LINE L1 37 1632 -4764 1101 213 77 0 chr11 11075468 11075806 -139707747 + L1ME4a LINE L1 4302 4665 -1550 * 1591 220 28 8 chr11 11075801 11076201 -139707352 + L1ME4a LINE L1 5595 6002 -231 262 229 30 0 chr11 11076206 11076283 -139707270 + L1MA10 LINE L1 6074 6148 -14 214 292 31 0 chr11 11076309 11076374 -139707179 + MIR3 SINE MIR 133 199 -9 2369 129 5 15 chr11 11077169 11077551 -139706002 - Tigger3b DNA MER2_type -14 1217 840 1263 97 88 23 chr11 11077551 11077767 -139705786 + MER30 DNA MER1_type 1 230 0 * 4392 105 80 26 chr11 11077767 11078569 -139704984 - Tigger3b DNA MER2_type -384 847 3 195 229 82 49 chr11 11078689 11078750 -139704803 - L2 LINE L2 -51 3221 3159 329 231 0 22 chr11 11079056 11079147 -139704406 + L1ME4a LINE L1 6101 6189 -1 183 307 0 93 chr11 11079167 11079242 -139704311 + L2 LINE L2 3188 3255 -58 223 318 15 0 chr11 11079682 11079748 -139703805 - L2 LINE L2 -653 2661 2595 710 309 93 36 chr11 11080073 11080406 -139703147 + L3 LINE CR1 988 1339 -238 669 238 108 36 chr11 11080418 11080641 -139702912 - MIR SINE MIR 0 262 24 243 356 0 11 chr11 11080690 11080777 -139702776 + L3 LINE CR1 1371 1456 -121 391 266 85 0 chr11 11080831 11080925 -139702628 + MER5A DNA MER1_type 10 111 -78 472 302 117 9 chr11 11080957 11081179 -139702374 + MIR SINE MIR 6 251 -11 2195 53 49 11 chr11 11081704 11081989 -139701564 + AluY SINE Alu 1 296 -15 2308 94 3 0 chr11 11083814 11084112 -139699441 + AluY SINE Alu 1 299 -12 1596 251 72 70 chr11 11084428 11085304 -139698249 - L2 LINE L2 -4 3309 2419 465 307 76 76 chr11 11086067 11086331 -139697222 - L2 LINE L2 -5 3267 3004 498 276 105 0 chr11 11086363 11086591 -139696962 + MLT1L LTR MaLR 1 252 -363 219 390 45 32 chr11 11086904 11087058 -139696495 - L2 LINE L2 -560 2754 2599 190 224 271 35 chr11 11087064 11087149 -139696404 + L2 LINE L2 3163 3267 -5 23 54 0 0 chr11 11088085 11088122 -139695431 + AT_rich Low_complexity Low_complexity 1 37 0 2376 78 3 0 chr11 11088408 11088701 -139694852 + AluSg SINE Alu 1 294 -16 378 0 0 0 chr11 11089809 11089851 -139693702 + (CA)n Simple_repeat Simple_repeat 2 43 0 234 298 0 0 chr11 11090287 11090344 -139693209 + L2 LINE L2 3208 3264 -8 240 35 0 0 chr11 11091790 11091819 -139691734 + (CA)n Simple_repeat Simple_repeat 2 30 0 610 318 80 29 chr11 11091873 11092112 -139691441 - MIR SINE MIR -10 252 2 26 0 0 0 chr11 11092182 11092208 -139691345 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 11092528 11092550 -139691003 + AT_rich Low_complexity Low_complexity 1 22 0 190 330 171 0 chr11 11092811 11092899 -139690654 + L3 LINE CR1 505 607 -970 504 312 42 89 chr11 11093272 11093676 -139689877 - L2 LINE L2 -37 3235 2851 367 293 249 9 chr11 11093699 11093928 -139689625 + L3 LINE CR1 636 919 -658 693 125 21 97 chr11 11093930 11094074 -139689479 - FLAM_C SINE Alu -10 133 1 668 325 183 32 chr11 11094091 11094620 -139688933 + L3 LINE CR1 934 1542 -35 2152 220 21 14 chr11 11094824 11095337 -139688216 - MER34 LTR ERV1 0 542 26 227 204 0 23 chr11 11095920 11095964 -139687589 + L2 LINE L2 3227 3269 -3 214 289 0 0 chr11 11099093 11099131 -139684422 - L2 LINE L2 -25 3247 3210 232 312 87 33 chr11 11099150 11099242 -139684311 - MIR SINE MIR -102 106 12 730 286 57 0 chr11 11099332 11099577 -139683976 - MIR SINE MIR -2 260 2 211 369 10 19 chr11 11099590 11099693 -139683860 + L2 LINE L2 3198 3299 -14 4163 202 43 43 chr11 11099834 11100193 -139683360 + L1ME1 LINE L1 4106 4464 -1702 2448 130 70 2 chr11 11100193 11100607 -139682946 + L1PA16 LINE L1 5718 6159 -7 4163 202 43 43 chr11 11100607 11101107 -139682446 + L1ME1 LINE L1 4464 4963 -1203 8440 166 117 11 chr11 11101107 11102694 -139680859 - MER52A LTR ERV1 0 1755 1 4163 202 43 43 chr11 11102694 11103899 -139679654 + L1ME1 LINE L1 4963 6161 -5 25 51 0 0 chr11 11104073 11104112 -139679441 + AT_rich Low_complexity Low_complexity 1 39 0 2220 96 0 10 chr11 11104579 11104899 -139678654 - AluSc SINE Alu 0 309 1 611 303 23 27 chr11 11105045 11105240 -139678313 - MIR3 SINE MIR -11 197 2 2544 60 0 0 chr11 11107354 11107654 -139675899 - AluY SINE Alu -11 300 1 1263 252 62 84 chr11 11108453 11109001 -139674552 + MLT1F1 LTR MaLR 7 567 0 1361 189 4 19 chr11 11109406 11109666 -139673887 - LTR26B LTR ERV1 0 531 276 4490 172 54 32 chr11 11109668 11110692 -139672861 + L1MC3 LINE L1 6740 7785 0 854 214 80 5 chr11 11111128 11111329 -139672224 + MIR SINE MIR 23 238 -24 348 310 239 6 chr11 11111653 11111988 -139671565 + L3 LINE CR1 1052 1464 -113 2152 116 0 0 chr11 11111996 11112281 -139671272 + AluSx SINE Alu 3 287 -25 367 204 65 21 chr11 11112298 11112391 -139671162 - MER5A DNA MER1_type -55 134 38 222 174 0 0 chr11 11112702 11112748 -139670805 + (TG)n Simple_repeat Simple_repeat 1 46 0 247 306 46 10 chr11 11114356 11114552 -139669001 - L1ME LINE L1 -383 5738 5536 21 0 0 0 chr11 11114648 11114669 -139668884 + AT_rich Low_complexity Low_complexity 1 21 0 428 302 0 0 chr11 11114757 11114873 -139668680 + MIR SINE MIR 75 190 -72 612 294 137 53 chr11 11115516 11116156 -139667397 + L2 LINE L2 2579 3271 -1 460 316 117 46 chr11 11116305 11116912 -139666641 - L2 LINE L2 -314 2999 2336 249 329 47 12 chr11 11116943 11117028 -139666525 + MIR SINE MIR 45 132 -76 275 220 159 15 chr11 11117058 11117190 -139666363 + HAL1b LINE L1 987 1137 -211 188 324 29 0 chr11 11117347 11117415 -139666138 - L2 LINE L2 -999 2315 2246 233 228 234 18 chr11 11117825 11117992 -139665561 - HAL1b LINE L1 -211 1137 935 201 158 0 0 chr11 11118003 11118041 -139665512 + T-rich Low_complexity Low_complexity 1 38 0 315 278 52 35 chr11 11118063 11118236 -139665317 - L1ME4a LINE L1 -12 6109 5934 1967 89 48 10 chr11 11118243 11118534 -139665019 - AluY SINE Alu -9 302 1 403 330 22 60 chr11 11118806 11118988 -139664565 + MIR3 SINE MIR 5 179 -29 309 272 133 63 chr11 11119406 11119509 -139664044 + MIR SINE MIR 3 122 -140 2587 56 13 0 chr11 11119509 11119815 -139663738 - AluY SINE Alu -1 310 1 309 272 133 63 chr11 11119815 11119869 -139663684 + MIR SINE MIR 122 171 -91 1332 183 103 3 chr11 11119869 11120169 -139663384 - MER2 DNA MER2_type -15 330 1 689 286 34 49 chr11 11121510 11121763 -139661790 + MIR SINE MIR 2 249 -13 705 165 8 16 chr11 11122229 11122356 -139661197 - FLAM_A SINE Alu -5 137 12 898 185 14 28 chr11 11122379 11122595 -139660958 - AluSp SINE Alu -12 301 89 1167 84 60 0 chr11 11122697 11122864 -139660689 - L1PA7 LINE L1 -14 6140 5964 21 0 0 0 chr11 11122899 11122920 -139660633 + AT_rich Low_complexity Low_complexity 1 21 0 483 194 0 11 chr11 11122924 11123017 -139660536 + MIR SINE MIR 63 154 -108 202 188 0 0 chr11 11123249 11123281 -139660272 + polypyrimidine Low_complexity Low_complexity 5 36 0 589 323 180 7 chr11 11123281 11123835 -139659718 - L2 LINE L2 -8 3264 2613 234 217 0 0 chr11 11124308 11124354 -139659199 - MIR3 SINE MIR -3 205 160 268 273 0 0 chr11 11126406 11126461 -139657092 - L2 LINE L2 -8 3264 3210 752 301 38 15 chr11 11127197 11127459 -139656094 + Charlie8 DNA MER1_type 18 285 -2132 280 203 14 14 chr11 11127518 11127587 -139655966 + Charlie8 DNA MER1_type 2340 2408 -9 486 0 0 0 chr11 11127911 11127965 -139655588 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 378 250 67 61 chr11 11127977 11128200 -139655353 - MIR SINE MIR -13 249 19 1089 46 0 0 chr11 11129201 11129331 -139654222 - L1PA5 LINE L1 -429 5726 5597 3534 48 5 0 chr11 11129331 11129762 -139653791 + L1PA5 LINE L1 5719 6153 -1 5063 125 67 57 chr11 11129805 11130589 -139652964 - MER21A LTR ERV1 0 931 135 2256 113 0 3 chr11 11130589 11130890 -139652663 + AluSx SINE Alu 1 300 -12 5063 125 67 57 chr11 11130890 11131011 -139652542 - MER21A LTR ERV1 -796 135 17 1354 142 8 25 chr11 11131163 11131403 -139652150 - AluSp SINE Alu -77 236 1 2188 124 0 0 chr11 11131404 11131703 -139651850 - AluSx SINE Alu -13 299 1 239 240 128 8 chr11 11132061 11132186 -139651367 + MIR SINE MIR 120 259 -3 249 355 0 11 chr11 11132338 11132431 -139651122 + MIR SINE MIR 19 110 -152 502 275 116 9 chr11 11132526 11132759 -139650794 + MARNA DNA Mariner 261 518 -68 801 169 0 0 chr11 11133313 11133437 -139650116 + FLAM_C SINE Alu 3 126 -17 1980 190 87 3 chr11 11135328 11135707 -139647846 - MLT1E2 LTR MaLR 0 626 216 469 136 57 23 chr11 11135731 11135819 -139647734 - AluJb SINE Alu -24 288 198 2553 59 7 0 chr11 11135831 11136134 -139647419 - AluY SINE Alu -5 306 2 486 169 124 90 chr11 11136135 11136312 -139647241 - MLT1E2 LTR MaLR -348 157 1 3238 127 91 2 chr11 11136544 11137135 -139646418 - L1MA5A LINE L1 0 6297 5654 404 291 40 29 chr11 11137783 11138047 -139645506 - MLT1J2 LTR MaLR 0 450 155 215 344 117 23 chr11 11139640 11139768 -139643785 - L2 LINE L2 -16 3256 3117 678 244 27 45 chr11 11140096 11140317 -139643236 + MIR SINE MIR 21 237 -25 249 296 112 65 chr11 11141971 11142140 -139641413 + MER5B DNA MER1_type 1 177 -1 325 324 14 14 chr11 11142552 11142697 -139640856 + CT-rich Low_complexity Low_complexity 2 146 0 201 306 16 0 chr11 11146286 11146348 -139637205 + L2 LINE L2 3209 3271 -1 382 319 84 51 chr11 11147663 11147969 -139635584 - L2 LINE L2 -14 3299 2974 2226 99 14 0 chr11 11147969 11148253 -139635300 + AluSx SINE Alu 1 288 -24 382 319 84 51 chr11 11148253 11148360 -139635193 - L2 LINE L2 -339 2974 2872 * 1224 301 163 18 chr11 11148354 11149390 -139634163 - L2 LINE L2 -951 2363 1178 342 0 0 0 chr11 11149844 11149882 -139633671 + (TA)n Simple_repeat Simple_repeat 2 39 0 372 274 210 14 chr11 11149968 11150187 -139633366 + MIR SINE MIR 1 262 0 195 327 0 0 chr11 11150845 11150897 -139632656 - MIR SINE MIR -171 91 40 292 258 113 0 chr11 11150949 11151046 -139632507 - MIR SINE MIR -63 145 38 186 277 0 0 chr11 11151506 11151553 -139632000 + L2 LINE L2 3006 3052 -220 2372 103 0 0 chr11 11151598 11151899 -139631654 - AluSx SINE Alu -11 301 1 780 227 22 16 chr11 11153063 11153248 -139630305 + MIR SINE MIR 64 249 -13 1872 140 7 26 chr11 11153523 11153830 -139629723 - AluJb SINE Alu -11 301 1 216 365 24 0 chr11 11153948 11154033 -139629520 + L2 LINE L2 3088 3174 -98 189 0 0 0 chr11 11154602 11154623 -139628930 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 980 88 8 0 chr11 11154623 11154748 -139628805 - AluSg1 SINE Alu -183 126 1 692 249 116 37 chr11 11155959 11156313 -139627240 + MLT1L LTR MaLR 6 387 -228 390 194 187 52 chr11 11157329 11157484 -139626069 - MER5B DNA MER1_type -1 177 2 360 302 99 39 chr11 11157893 11158125 -139625428 - L1ME4a LINE L1 -2 6119 5874 342 271 52 0 chr11 11158162 11158258 -139625295 - L1ME4a LINE L1 -324 5797 5697 2018 146 7 0 chr11 11160301 11160595 -139622958 - AluSx SINE Alu -16 296 1 3037 128 15 2 chr11 11161069 11161546 -139622007 - L1PA13 LINE L1 -3 6160 5678 1373 283 59 50 chr11 11161550 11162162 -139621391 - L1MEd LINE L1 -4653 1657 1052 856 255 60 82 chr11 11162162 11162577 -139620976 - MLT1I LTR MaLR -3 406 1 1373 283 59 50 chr11 11162577 11162702 -139620851 - L1MEd LINE L1 -5258 1052 930 1567 150 6 104 chr11 11162702 11163028 -139620525 - AluJo SINE Alu -18 294 1 1373 283 59 50 chr11 11163028 11163288 -139620265 - L1MEd LINE L1 -5380 930 578 873 304 88 23 chr11 11163366 11163797 -139619756 - L1MEd LINE L1 -5655 464 6 252 275 110 0 chr11 11163810 11163919 -139619634 + L1P LINE L1 5269 5389 -762 338 288 108 36 chr11 11163923 11164173 -139619380 + L1ME LINE L1 5411 5678 -443 239 317 117 0 chr11 11164580 11164700 -139618853 + L2 LINE L2 3139 3272 0 332 282 71 18 chr11 11165149 11165319 -139618234 + L2 LINE L2 2580 2758 -556 281 325 41 35 chr11 11165437 11165606 -139617947 + L2 LINE L2 2921 3090 -182 343 326 39 48 chr11 11165716 11165946 -139617607 + L2 LINE L2 2575 2802 -512 252 321 19 28 chr11 11166848 11166954 -139616599 + MER94 DNA DNA 17 121 -13 325 308 14 14 chr11 11167719 11167862 -139615691 - MIR SINE MIR -85 177 35 497 236 61 14 chr11 11168149 11168297 -139615256 + MER103 DNA DNA 10 164 -2 1874 146 43 15 chr11 11168682 11169010 -139614543 - MER1B DNA MER1_type 0 337 1 1530 194 36 47 chr11 11169012 11169372 -139614181 + MLT1A1 LTR MaLR 10 365 0 624 282 107 0 chr11 11170824 11171040 -139612513 - MIR SINE MIR -15 247 9 948 173 6 45 chr11 11172416 11172595 -139610958 - AluJb SINE Alu -138 174 3 2052 166 80 13 chr11 11172773 11173250 -139610303 - L1M4 LINE L1 -751 5395 4887 638 174 0 35 chr11 11173462 11173577 -139609976 + AluJo SINE Alu 37 147 -165 217 238 95 0 chr11 11173577 11173640 -139609913 - MIR3 SINE MIR -130 78 10 377 303 62 28 chr11 11174093 11174309 -139609244 - MIR SINE MIR -18 244 16 503 293 185 48 chr11 11174602 11175120 -139608433 - L3 LINE CR1 -235 1342 754 401 337 87 5 chr11 11175254 11175450 -139608103 + L3 LINE CR1 1357 1568 -9 1095 278 142 29 chr11 11177194 11177943 -139605610 + HAL1b LINE L1 66 898 -450 1878 240 42 20 chr11 11177945 11178491 -139605062 + MER74B LTR ERVL 55 612 -10 2306 93 6 3 chr11 11178537 11178880 -139604673 + L1P LINE L1 4571 4914 -1232 199 133 0 0 chr11 11178982 11179012 -139604541 + MIR SINE MIR 112 141 -67 1779 164 27 3 chr11 11179139 11179468 -139604085 + L1MB3 LINE L1 5845 6181 -2 1742 137 22 30 chr11 11179843 11180114 -139603439 - AluJb SINE Alu -22 290 22 308 219 16 0 chr11 11180149 11180213 -139603340 - L2 LINE L2 0 3313 3249 234 0 0 0 chr11 11180213 11180239 -139603314 + (CA)n Simple_repeat Simple_repeat 2 27 0 596 301 107 10 chr11 11180268 11180474 -139603079 - MIR SINE MIR -1 261 36 314 223 165 39 chr11 11185541 11185644 -139597909 - MIR SINE MIR -126 136 21 1052 71 0 0 chr11 11187705 11187832 -139595721 - AluSg/x SINE Alu -8 304 178 1153 226 167 15 chr11 11188197 11188599 -139594954 + MLT1K LTR MaLR 126 588 0 336 300 80 89 chr11 11188663 11188900 -139594653 + L2 LINE L2 2945 3179 -93 2313 118 7 0 chr11 11189473 11189823 -139593730 - AluSx SINE Alu 0 352 1 718 165 83 0 chr11 11189898 11190031 -139593522 + MER5A DNA MER1_type 46 189 0 231 197 105 0 chr11 11190033 11190109 -139593444 + LTR37B LTR ERV1 115 198 -270 * 776 256 47 24 chr11 11190083 11190400 -139593153 + LTR37B LTR ERV1 88 452 -16 2659 51 0 3 chr11 11190400 11190712 -139592841 - AluY SINE Alu 0 311 1 776 256 47 24 chr11 11190712 11190726 -139592827 + LTR37B LTR ERV1 452 464 -4 2782 105 50 121 chr11 11191549 11192091 -139591462 - L1MA9 LINE L1 -5 6307 5817 297 0 0 0 chr11 11192091 11192124 -139591429 + (TG)n Simple_repeat Simple_repeat 2 34 0 2782 105 50 121 chr11 11192124 11192228 -139591325 - L1MA9 LINE L1 -495 5817 5707 379 206 235 42 chr11 11193346 11193496 -139590057 + MIR SINE MIR 16 188 -74 24 0 0 0 chr11 11193530 11193554 -139589999 + AT_rich Low_complexity Low_complexity 1 24 0 1415 183 12 20 chr11 11193562 11193814 -139589739 - AluJo SINE Alu -62 250 1 338 282 91 92 chr11 11193897 11194402 -139589151 - L2 LINE L2 -6 3266 2741 404 301 120 0 chr11 11195471 11195654 -139587899 + Charlie8 DNA MER1_type 1 205 -2212 2240 124 7 0 chr11 11196250 11196557 -139586996 - AluSx SINE Alu -3 309 1 351 266 13 0 chr11 11197261 11197340 -139586213 - L2 LINE L2 -1 3271 3192 563 234 174 12 chr11 11198102 11198269 -139585284 + MIR SINE MIR 7 200 -62 387 167 65 37 chr11 11198275 11198383 -139585170 - MER53 DNA DNA 0 189 79 564 194 97 0 chr11 11198398 11198501 -139585052 - FLAM_A SINE Alu -29 113 1 183 311 256 0 chr11 11199146 11199236 -139584317 - MIR SINE MIR -107 155 43 271 252 63 54 chr11 11199937 11200048 -139583505 + MIR SINE MIR 81 192 -70 2478 47 3 44 chr11 11200220 11200537 -139583016 + AluY SINE Alu 1 304 -7 195 146 0 0 chr11 11201050 11201091 -139582462 + (TCCA)n Simple_repeat Simple_repeat 2 42 0 199 313 54 54 chr11 11201091 11201203 -139582350 - L2 LINE L2 -24 3248 3137 421 273 41 8 chr11 11201523 11201644 -139581909 + MIR SINE MIR 47 171 -91 31 26 0 0 chr11 11201701 11201739 -139581814 + AT_rich Low_complexity Low_complexity 1 38 0 428 250 116 0 chr11 11201875 11201987 -139581566 + MIR SINE MIR 116 240 -22 183 296 0 0 chr11 11202410 11202454 -139581099 + L2 LINE L2 3187 3230 -83 190 80 0 0 chr11 11202528 11202553 -139581000 - L2 LINE L2 -17 3296 3272 451 299 22 15 chr11 11202679 11202813 -139580740 + MIR SINE MIR 56 190 -72 218 289 0 0 chr11 11203009 11203061 -139580492 - MIR SINE MIR -17 245 194 773 260 54 27 chr11 11203071 11203294 -139580259 + MIR SINE MIR 34 262 0 239 325 0 26 chr11 11203295 11203372 -139580181 - MIR SINE MIR -100 162 88 200 281 0 0 chr11 11203687 11203744 -139579809 + CT-rich Low_complexity Low_complexity 3 59 0 686 287 96 9 chr11 11205868 11206098 -139577455 - MIR SINE MIR -12 250 1 564 299 111 27 chr11 11206383 11206754 -139576799 + MLT1K LTR MaLR 170 571 -17 525 287 81 6 chr11 11206899 11207073 -139576480 + MIR SINE MIR 2 188 -74 209 261 0 0 chr11 11207387 11207433 -139576120 - L2 LINE L2 -18 3254 3209 254 228 202 35 chr11 11207870 11207984 -139575569 - L2 LINE L2 0 3313 3181 593 373 159 7 chr11 11208522 11208943 -139574610 + L3 LINE CR1 986 1470 -107 230 197 115 16 chr11 11209709 11209770 -139573783 - MIR SINE MIR -118 144 78 661 296 30 15 chr11 11209950 11210174 -139573379 - MIR SINE MIR -23 239 5 459 166 80 160 chr11 11210501 11210688 -139572865 - MIR SINE MIR -56 206 35 270 281 33 52 chr11 11211151 11211304 -139572249 - MIR3 SINE MIR -30 178 29 495 225 159 0 chr11 11211648 11211786 -139571767 + MIR SINE MIR 52 211 -51 273 196 0 95 chr11 11212121 11212289 -139571264 + (CTGTG)n Simple_repeat Simple_repeat 4 155 0 1991 181 65 14 chr11 11213502 11213916 -139569637 - MER63B DNA MER1_type -1 435 1 468 307 132 60 chr11 11214012 11214734 -139568819 + L2 LINE L2 2275 3097 -175 2555 168 19 41 chr11 11214734 11215246 -139568307 - MLT1D LTR MaLR 0 505 5 468 307 132 60 chr11 11215246 11215436 -139568117 + L2 LINE L2 3097 3272 0 1065 122 0 0 chr11 11215481 11215620 -139567933 + AluSq/x SINE Alu 1 139 -174 334 254 0 0 chr11 11216819 11216886 -139566667 - L2 LINE L2 0 3313 3247 258 172 62 16 chr11 11216900 11216964 -139566589 + L2 LINE L2 3019 3085 -187 469 235 83 0 chr11 11217200 11217322 -139566231 - MIR SINE MIR -65 143 41 239 282 82 24 chr11 11217822 11217907 -139565646 + MIR3 SINE MIR 68 157 -51 690 302 108 23 chr11 11218006 11218403 -139565150 + MLT1K LTR MaLR 158 588 0 243 0 0 0 chr11 11218483 11218510 -139565043 + (CCCTAA)n Simple_repeat Simple_repeat 2 28 0 663 326 89 8 chr11 11219553 11219789 -139563764 - MIR SINE MIR -6 256 2 404 352 6 17 chr11 11221088 11221264 -139562289 + MER5B DNA MER1_type 4 177 -1 898 248 33 0 chr11 11221786 11222000 -139561553 + MER58A DNA MER1_type 1 221 -3 266 258 70 15 chr11 11222638 11222781 -139560772 + MIR SINE MIR 76 228 -34 2173 149 17 61 chr11 11223937 11224345 -139559208 + MLT1B LTR MaLR 1 390 0 4567 203 63 29 chr11 11224540 11224787 -139558766 + L1MB7 LINE L1 4186 4423 -1761 2067 133 0 0 chr11 11224787 11225072 -139558481 + AluSx SINE Alu 1 327 0 280 71 0 0 chr11 11225072 11225114 -139558439 + (CAA)n Simple_repeat Simple_repeat 2 180 0 4567 203 63 29 chr11 11225114 11226358 -139557195 + L1MB7 LINE L1 4423 5804 -380 2131 107 0 3 chr11 11226358 11226649 -139556904 + AluSx SINE Alu 1 290 -22 4567 203 63 29 chr11 11226649 11227034 -139556519 + L1MB7 LINE L1 5804 6174 -10 295 241 24 12 chr11 11227103 11227186 -139556367 + MIR3 SINE MIR 108 191 -17 316 263 143 30 chr11 11227418 11227551 -139556002 - L2 LINE L2 -1 3312 3165 711 303 155 24 chr11 11229769 11230195 -139553358 + MLT1K LTR MaLR 106 587 -1 3145 137 30 4 chr11 11231004 11231351 -139552202 - L1MB5 LINE L1 -36 6138 5771 395 68 17 0 chr11 11231351 11231410 -139552143 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 3145 137 30 4 chr11 11231410 11231587 -139551966 - L1MB5 LINE L1 -403 5771 5600 385 236 130 26 chr11 11231777 11231965 -139551588 - MIR SINE MIR -47 215 9 1062 156 6 0 chr11 11232585 11232758 -139550795 - L1MB5 LINE L1 -43 6131 5958 482 271 90 30 chr11 11232758 11232953 -139550600 - MIR SINE MIR -52 210 10 564 172 35 17 chr11 11233185 11233301 -139550252 + MER103 DNA DNA 48 165 -1 1895 142 17 0 chr11 11233349 11233645 -139549908 + AluSq SINE Alu 1 301 -12 910 156 17 8 chr11 11233660 11233898 -139549655 + GA-rich Low_complexity Low_complexity 1 240 0 674 220 226 0 chr11 11233989 11234166 -139549387 + MIR SINE MIR 8 224 -38 350 307 0 10 chr11 11234964 11235065 -139548488 - MIR SINE MIR -68 140 41 681 291 58 0 chr11 11235377 11235566 -139547987 + MIR SINE MIR 60 259 -3 515 328 75 33 chr11 11236436 11236768 -139546785 + Charlie7 DNA MER1_type 108 453 -2159 381 276 162 42 chr11 11236867 11237175 -139546378 + LTR33 LTR ERVL 1 345 -176 544 180 69 65 chr11 11237211 11237456 -139546097 + Charlie7 DNA MER1_type 2366 2611 -1 4148 37 0 0 chr11 11237478 11238005 -139545548 + L1PA3 LINE L1 5657 6183 0 1611 135 113 14 chr11 11238518 11238800 -139544753 + AluSx SINE Alu 1 310 -2 1421 170 0 45 chr11 11238812 11239100 -139544453 + AluJb SINE Alu 25 299 -13 267 240 240 0 chr11 11239546 11239646 -139543907 - MIR SINE MIR -32 176 52 205 261 141 22 chr11 11240143 11240235 -139543318 + MIR SINE MIR 154 256 -6 345 300 140 33 chr11 11241250 11241277 -139542276 - MIR SINE MIR -89 173 150 1292 150 12 38 chr11 11241277 11241517 -139542036 + MER46A DNA MER2_type 1 234 -2 345 300 140 33 chr11 11241517 11241639 -139541914 - MIR SINE MIR -112 150 8 231 288 0 0 chr11 11242102 11242175 -139541378 + MER113 DNA MER1_type? 21 93 -428 1026 258 9 0 chr11 11242191 11242416 -139541137 + MIR SINE MIR 36 262 0 518 212 112 39 chr11 11242425 11242608 -139540945 + MER113 DNA MER1_type? 127 295 -226 355 236 85 19 chr11 11242608 11242714 -139540839 - MER81 DNA DNA -1 113 1 518 212 112 39 chr11 11242714 11242866 -139540687 + MER113 DNA MER1_type? 295 519 -2 332 222 111 87 chr11 11242974 11243343 -139540210 + L1ME4a LINE L1 5742 6119 -2 1844 112 65 0 chr11 11243465 11243742 -139539811 + AluSx SINE Alu 1 295 -17 209 175 0 0 chr11 11244154 11244194 -139539359 + L2 LINE L2 3256 3295 -18 270 265 60 86 chr11 11244579 11244696 -139538857 - L2 LINE L2 -1 3271 3158 329 331 63 35 chr11 11245223 11245365 -139538188 + MIR SINE MIR 92 237 -25 280 229 83 104 chr11 11245681 11245825 -139537728 + MIR SINE MIR 13 153 -55 311 270 22 0 chr11 11246340 11246429 -139537124 + (CAGAGA)n Simple_repeat Simple_repeat 3 93 0 453 286 34 20 chr11 11247516 11247663 -139535890 + MIR SINE MIR 103 251 -11 440 157 36 3 chr11 11247840 11247982 -139535571 - MER53 DNA DNA -2 187 1 421 339 83 12 chr11 11248483 11248651 -139534902 - MER5A DNA MER1_type -3 186 7 324 0 0 0 chr11 11248741 11248777 -139534776 + (TG)n Simple_repeat Simple_repeat 1 36 0 509 301 125 23 chr11 11248812 11249028 -139534525 - MIR SINE MIR -16 246 9 998 251 150 6 chr11 11249218 11249575 -139533978 + L1MC4a LINE L1 5530 5761 -403 242 281 0 0 chr11 11249575 11249660 -139533893 + (CATA)n Simple_repeat Simple_repeat 1 85 0 660 243 17 17 chr11 11249962 11250143 -139533410 - L1MD3 LINE L1 -11 7984 7804 294 320 72 16 chr11 11250181 11250306 -139533247 - L2 LINE L2 0 3272 3141 240 305 86 23 chr11 11250973 11251101 -139532452 - MIR SINE MIR -33 229 94 311 261 62 50 chr11 11251177 11251338 -139532215 + HAL1 LINE L1 26 188 -2319 1004 225 67 11 chr11 11251509 11251793 -139531760 + L1MC4a LINE L1 6272 6571 -1237 642 49 0 0 chr11 11251814 11251896 -139531657 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 1232 90 0 24 chr11 11251914 11252081 -139531472 + THE1B LTR MaLR 200 362 -2 11719 86 24 5 chr11 11252083 11253634 -139529919 + THE1B-int LTR MaLR 1 1580 0 2314 121 3 62 chr11 11253634 11253801 -139529752 + THE1B LTR MaLR 1 176 -188 2678 16 0 7 chr11 11253801 11254110 -139529443 + AluYb8 SINE Alu 1 307 -11 2314 121 3 62 chr11 11254110 11254329 -139529224 + THE1B LTR MaLR 176 364 0 1069 216 127 27 chr11 11254330 11254695 -139528858 + L1MC4 LINE L1 7460 7934 -61 2075 116 3 13 chr11 11254695 11254998 -139528555 - AluSx SINE Alu -12 300 1 1069 216 127 27 chr11 11254998 11255054 -139528499 + L1MC4 LINE L1 7934 7983 -12 211 222 0 0 chr11 11255378 11255414 -139528139 + MER5B DNA MER1_type 1 36 -142 * 236 264 0 56 chr11 11255413 11255485 -139528068 - MER5B DNA MER1_type -85 93 26 248 157 17 209 chr11 11255509 11255564 -139527989 - MER5B DNA MER1_type -5 173 109 1865 107 29 0 chr11 11255564 11255836 -139527717 + AluSx SINE Alu 1 280 -32 261 0 0 0 chr11 11255836 11255865 -139527688 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 248 157 17 209 chr11 11255865 11255923 -139527630 - MER5B DNA MER1_type -67 111 81 270 267 116 27 chr11 11255986 11256132 -139527421 + HAL1 LINE L1 745 903 -1604 1302 263 25 50 chr11 11256135 11256535 -139527018 + L2 LINE L2 2921 3310 -3 687 265 130 41 chr11 11256535 11257052 -139526501 + HAL1 LINE L1 896 1458 -1049 1916 154 0 0 chr11 11257311 11257617 -139525936 + AluSx SINE Alu 1 306 -6 43 0 0 0 chr11 11257729 11257772 -139525781 + AT_rich Low_complexity Low_complexity 1 43 0 317 288 54 9 chr11 11257927 11258038 -139525515 - L2 LINE L2 -3 3269 3154 250 313 22 22 chr11 11258426 11258560 -139524993 - L2 LINE L2 -495 2819 2686 212 226 19 0 chr11 11258638 11258691 -139524862 + MIR SINE MIR 88 141 -121 460 259 90 55 chr11 11259033 11259234 -139524319 - L2 LINE L2 -832 2482 2275 237 237 26 26 chr11 11259608 11259703 -139523850 + GA-rich Low_complexity Low_complexity 2 152 0 216 0 0 0 chr11 11260368 11260392 -139523161 + (TTA)n Simple_repeat Simple_repeat 2 25 0 183 326 0 0 chr11 11260431 11260474 -139523079 + L2 LINE L2 3137 3179 -93 734 284 19 45 chr11 11260511 11260779 -139522774 - MIR SINE MIR 0 262 2 296 186 0 34 chr11 11261454 11261513 -139522040 - LTR67 LTR ERVL -9 548 492 303 122 0 0 chr11 11261724 11261773 -139521780 + (TCC)n Simple_repeat Simple_repeat 1 49 0 647 285 105 6 chr11 11262050 11262280 -139521273 - MIR SINE MIR -12 250 1 516 309 157 47 chr11 11262597 11263043 -139520510 - L3 LINE CR1 -193 1384 890 1620 257 90 23 chr11 11263576 11264098 -139519455 + L2 LINE L2 2094 2650 -664 1162 137 26 6 chr11 11264114 11264346 -139519207 - AluJb SINE Alu -6 306 26 1186 223 156 35 chr11 11264357 11264406 -139519147 + L2 LINE L2 2692 2734 -579 2031 126 7 3 chr11 11264406 11264708 -139518845 - AluSx SINE Alu -9 303 1 1186 223 156 35 chr11 11264708 11265214 -139518339 + L2 LINE L2 2734 3311 -2 182 308 0 0 chr11 11265247 11265299 -139518254 - MIR SINE MIR -101 161 110 443 252 71 24 chr11 11266002 11266129 -139517424 - L2 LINE L2 0 3272 3140 206 62 31 0 chr11 11266129 11266161 -139517392 + (CACCAT)n Simple_repeat Simple_repeat 1 33 0 883 268 68 8 chr11 11266163 11266398 -139517155 - MIR SINE MIR -5 257 9 273 306 97 73 chr11 11266644 11266850 -139516703 - MIR SINE MIR -6 256 46 581 136 64 129 chr11 11267552 11267605 -139515948 - AluJ SINE Alu -171 131 76 2247 64 40 0 chr11 11267605 11267901 -139515652 - AluY SINE Alu -3 308 1 581 136 64 129 chr11 11267901 11267987 -139515566 - AluJ SINE Alu -226 76 1 252 299 65 0 chr11 11268714 11268791 -139514762 + L2 LINE L2 2624 2705 -609 187 275 208 20 chr11 11269640 11269789 -139513764 - MER5B DNA MER1_type -1 177 1 465 310 75 16 chr11 11270252 11270636 -139512917 + MLT1L LTR MaLR 121 584 -31 378 331 93 65 chr11 11272355 11273012 -139510541 + L2 LINE L2 2596 3264 -8 2013 151 0 0 chr11 11273334 11273638 -139509915 + AluSx SINE Alu 1 304 -8 1724 144 56 105 chr11 11274402 11274812 -139508741 + MLT1B LTR MaLR 1 390 0 382 253 69 120 chr11 11274825 11275052 -139508501 - MIR SINE MIR -53 209 3 2001 167 0 0 chr11 11276147 11276459 -139507094 + AluSx SINE Alu 1 312 0 540 248 35 14 chr11 11276520 11276661 -139506892 + MER117 DNA MER1_type 1 144 -53 2337 92 3 3 chr11 11276761 11277067 -139506486 - AluSp SINE Alu -5 308 3 444 154 0 0 chr11 11278324 11278416 -139505137 - AluJo SINE Alu 0 311 220 1197 164 0 0 chr11 11278416 11278593 -139504960 - AluJo SINE Alu -135 177 1 1567 144 55 74 chr11 11279005 11279258 -139504295 - MLT1F1 LTR MaLR -261 306 59 752 110 0 0 chr11 11279258 11279358 -139504195 + HY3 scRNA scRNA 1 100 -1 1567 144 55 74 chr11 11279358 11279416 -139504137 - MLT1F1 LTR MaLR -508 59 1 298 314 148 65 chr11 11279430 11279659 -139503894 - L2 LINE L2 -45 3227 2980 1983 125 14 0 chr11 11280074 11280354 -139503199 + AluSx SINE Alu 24 307 -5 180 305 17 0 chr11 11281549 11281608 -139501945 - L2 LINE L2 -91 3222 3163 247 313 30 0 chr11 11282354 11282453 -139501100 - LTR67 LTR ERVL -17 540 439 187 310 124 9 chr11 11282919 11283032 -139500521 - MIR SINE MIR -34 228 103 2019 169 0 3 chr11 11283045 11283358 -139500195 - AluJb SINE Alu 0 312 1 2124 101 10 42 chr11 11284106 11284414 -139499139 + AluSq SINE Alu 1 298 -15 4486 125 5 65 chr11 11284538 11285273 -139498280 + LTR8 LTR ERV1 1 691 0 333 0 0 0 chr11 11285297 11285334 -139498219 + (TG)n Simple_repeat Simple_repeat 2 38 0 392 196 54 71 chr11 11285335 11285447 -139498106 + MLT1F1 LTR MaLR 88 197 -370 210 71 0 0 chr11 11285447 11285475 -139498078 + (TC)n Simple_repeat Simple_repeat 2 29 0 589 247 80 7 chr11 11285480 11285630 -139497923 + MER96 DNA MER1_type? 12 172 -3 391 297 16 104 chr11 11286141 11286390 -139497163 - MIR SINE MIR -34 228 2 1967 122 18 0 chr11 11286474 11286760 -139496793 + AluSx SINE Alu 2 292 -20 366 249 127 24 chr11 11286959 11287124 -139496429 + MIR SINE MIR 25 206 -56 32 57 0 0 chr11 11287124 11287177 -139496376 + AT_rich Low_complexity Low_complexity 1 53 0 938 161 0 0 chr11 11287570 11287707 -139495846 + FRAM SINE Alu 1 137 -39 210 71 0 0 chr11 11287710 11287738 -139495815 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 287 254 40 111 chr11 11287966 11288153 -139495400 - MLT1L LTR MaLR -360 228 87 203 139 38 13 chr11 11288198 11288277 -139495276 + (TG)n Simple_repeat Simple_repeat 1 81 0 207 250 26 13 chr11 11288287 11288363 -139495190 + (TATG)n Simple_repeat Simple_repeat 2 78 0 216 0 0 0 chr11 11288415 11288439 -139495114 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 1183 106 10 60 chr11 11288439 11288638 -139494915 - L1PB2 LINE L1 -11 6140 5952 197 278 67 44 chr11 11289514 11289604 -139493949 + MIR SINE MIR 110 201 -61 * 336 219 105 44 chr11 11289598 11289712 -139493841 - L2 LINE L2 0 3313 3193 1986 109 24 10 chr11 11290044 11290337 -139493216 + AluSx SINE Alu 9 305 -7 2102 131 0 13 chr11 11290337 11290650 -139492903 + AluSg SINE Alu 1 309 -1 451 257 128 57 chr11 11290662 11291028 -139492525 + L2 LINE L2 2024 2415 -899 723 218 0 0 chr11 11291104 11291228 -139492325 - FLAM_C SINE Alu -18 125 2 633 317 71 44 chr11 11291246 11291679 -139491874 + L2 LINE L2 2645 3088 -184 240 280 106 26 chr11 11291682 11291871 -139491682 + L1MC4a LINE L1 4726 4929 -1217 628 126 39 19 chr11 11292157 11292260 -139491293 + FLAM_C SINE Alu 29 133 -10 686 289 117 57 chr11 11292344 11292837 -139490716 + L1MC4a LINE L1 5297 5830 -1978 1299 189 12 114 chr11 11292837 11292983 -139490570 + AluSp SINE Alu 1 96 -217 1937 130 7 4 chr11 11292983 11293260 -139490293 + AluSx SINE Alu 1 278 -34 1299 189 12 114 chr11 11293260 11293447 -139490106 + AluSp SINE Alu 96 300 -13 686 289 117 57 chr11 11293447 11293517 -139490036 + L1MC4a LINE L1 5830 5894 -1914 496 239 43 43 chr11 11293770 11293933 -139489620 + LTR41 LTR ERVL 10 172 -601 1894 126 20 7 chr11 11294405 11294699 -139488854 + L1PA13 LINE L1 5866 6163 0 710 209 0 20 chr11 11294722 11294875 -139488678 + MIR SINE MIR 104 253 -9 222 327 62 18 chr11 11294867 11294915 -139488638 + L3 LINE CR1 1165 1209 -368 * 2205 134 0 0 chr11 11294915 11295214 -139488339 + AluSx SINE Alu 1 299 -13 222 327 62 18 chr11 11295214 11295278 -139488275 + L3 LINE CR1 1209 1282 -295 438 235 17 59 chr11 11295350 11295469 -139488084 - MER81 DNA DNA 0 114 1 190 345 35 17 chr11 11295496 11295612 -139487941 + L3 LINE CR1 1425 1542 -35 676 287 56 3 chr11 11295635 11295857 -139487696 + MIR SINE MIR 20 249 -13 819 225 22 6 chr11 11295902 11296084 -139487469 + MER5A DNA MER1_type 5 189 0 1971 158 19 3 chr11 11296901 11297224 -139486329 + LTR32 LTR ERVL 15 342 -129 1007 128 0 6 chr11 11297283 11297439 -139486114 + LTR32 LTR ERVL 317 471 0 817 180 0 0 chr11 11298010 11298132 -139485421 + FLAM_C SINE Alu 2 123 -20 278 188 165 24 chr11 11298441 11298526 -139485027 + MIR SINE MIR 164 260 -2 639 261 117 51 chr11 11298589 11298846 -139484707 - L1MEd LINE L1 -5509 610 337 334 191 43 21 chr11 11298976 11299007 -139484546 - L1MEd LINE L1 -6001 118 89 333 0 0 0 chr11 11299007 11299044 -139484509 + (TG)n Simple_repeat Simple_repeat 2 38 0 334 191 43 21 chr11 11299044 11299106 -139484447 - L1MEd LINE L1 -6030 89 23 2464 112 6 6 chr11 11299433 11299773 -139483780 + L1PB1 LINE L1 5803 6142 -9 2420 157 8 18 chr11 11299839 11300233 -139483320 + MLT1B LTR MaLR 1 390 0 865 180 0 7 chr11 11300349 11300499 -139483054 + AluJb SINE Alu 140 288 -24 563 77 70 4 chr11 11300499 11300792 -139482761 + (TA)n Simple_repeat Simple_repeat 1 312 0 914 198 6 0 chr11 11300862 11301019 -139482534 + FRAM SINE Alu 1 158 -18 1214 300 31 80 chr11 11301427 11302114 -139481439 + L2 LINE L2 2054 2706 -608 1975 132 7 20 chr11 11302117 11302420 -139481133 - AluSx SINE Alu -13 299 1 403 292 146 10 chr11 11302994 11303186 -139480367 + L2 LINE L2 2836 3053 -219 1095 167 82 26 chr11 11303407 11303752 -139479801 + Charlie5 DNA MER1_type 5 2530 -82 2164 100 7 0 chr11 11303752 11304053 -139479500 - AluSx SINE Alu -9 303 1 426 182 52 0 chr11 11305474 11305551 -139478002 - L1MB7 LINE L1 -56 6128 6048 205 29 59 0 chr11 11307028 11307062 -139476491 + (TA)n Simple_repeat Simple_repeat 2 37 0 561 309 100 9 chr11 11307185 11307405 -139476148 + MIR SINE MIR 20 259 -3 622 228 18 0 chr11 11307410 11307524 -139476029 - FLAM_A SINE Alu -16 117 2 245 277 60 24 chr11 11307552 11307635 -139475918 - MIR SINE MIR -81 127 42 2259 209 8 31 chr11 11307766 11308282 -139475271 - L1ME1 LINE L1 -4 6162 5659 812 144 0 0 chr11 11309397 11309508 -139474045 + AluJ SINE Alu 17 127 -185 2248 67 14 0 chr11 11309608 11309891 -139473662 - L1PA13 LINE L1 -4 6159 5873 1855 170 10 0 chr11 11310361 11310655 -139472898 + AluJb SINE Alu 1 297 -15 1502 173 46 11 chr11 11310662 11310946 -139472607 + AluJo SINE Alu 1 294 -18 4254 260 103 22 chr11 11311006 11311959 -139471594 - L2 LINE L2 -2 3311 2436 2349 184 70 11 chr11 11311959 11312400 -139471153 + LTR24 LTR ERV1 1 467 0 4254 260 103 22 chr11 11312400 11313085 -139470468 - L2 LINE L2 -877 2436 1526 752 218 151 67 chr11 11313718 11314030 -139469523 - MER46C DNA MER2_type 0 338 1 422 252 96 69 chr11 11314176 11314394 -139469159 - MLT1L LTR MaLR -175 440 217 976 164 31 6 chr11 11314405 11314564 -139468989 - MER20 DNA MER1_type -2 217 55 345 255 48 75 chr11 11314589 11314777 -139468776 - MLT1L LTR MaLR -432 183 1 851 226 0 0 chr11 11314819 11314978 -139468575 + AluJ SINE Alu 137 295 -17 240 338 103 15 chr11 11315576 11315712 -139467841 - L2 LINE L2 0 3272 3125 1887 161 0 13 chr11 11316079 11316377 -139467176 + AluJb SINE Alu 3 296 -16 379 209 136 0 chr11 11316379 11316489 -139467064 - MIR SINE MIR -52 210 86 540 265 141 103 chr11 11316675 11317073 -139466480 + L2 LINE L2 2590 3029 -284 2615 55 0 0 chr11 11317073 11317382 -139466171 - AluY SINE Alu -2 309 1 540 265 141 103 chr11 11317382 11317669 -139465884 + L2 LINE L2 3029 3304 -9 268 167 0 0 chr11 11317857 11317905 -139465648 + FLAM_A SINE Alu 86 133 0 1425 142 36 113 chr11 11317920 11318257 -139465296 + AluJo SINE Alu 2 312 0 193 284 148 23 chr11 11318268 11318356 -139465197 + MIR SINE MIR 153 251 -11 34 0 0 22 chr11 11320310 11320332 -139463221 + AT_rich Low_complexity Low_complexity 1 22 -22 725 180 0 33 chr11 11320332 11320454 -139463099 + FLAM_C SINE Alu 1 118 -15 34 0 0 22 chr11 11320454 11320476 -139463077 + AT_rich Low_complexity Low_complexity 22 44 0 2048 131 0 0 chr11 11320587 11320896 -139462657 - AluSx SINE Alu 0 310 2 736 219 65 69 chr11 11322024 11322270 -139461283 + MER112 DNA MER1_type 12 256 -4 197 62 0 31 chr11 11322794 11322826 -139460727 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 493 253 136 32 chr11 11323762 11323983 -139459570 + MIR SINE MIR 11 254 -8 2236 104 0 31 chr11 11324067 11324385 -139459168 + AluSg SINE Alu 1 308 -2 21 0 0 56 chr11 11327190 11327209 -139456344 + AT_rich Low_complexity Low_complexity 1 19 -15 2205 111 7 7 chr11 11327209 11327515 -139456038 + AluSp SINE Alu 1 306 -7 21 0 0 56 chr11 11327515 11327531 -139456022 + AT_rich Low_complexity Low_complexity 19 34 0 2232 109 0 23 chr11 11327874 11328178 -139455375 + AluSx SINE Alu 2 298 -14 2132 131 13 3 chr11 11328741 11329039 -139454514 + AluSx SINE Alu 1 301 -11 220 258 45 0 chr11 11329216 11329305 -139454248 + GA-rich Low_complexity Low_complexity 2 94 0 219 211 195 44 chr11 11329571 11329746 -139453807 + MIR SINE MIR 22 217 -45 1567 70 15 10 chr11 11331194 11331426 -139452127 - AluSp SINE Alu 0 313 95 253 217 121 0 chr11 11331675 11331758 -139451795 - L2 LINE L2 0 3272 3180 2133 134 3 0 chr11 11331826 11332132 -139451421 + AluSx SINE Alu 1 307 -5 746 131 0 0 chr11 11332386 11332493 -139451060 + FLAM_C SINE Alu 2 108 -35 244 231 58 0 chr11 11333670 11333722 -139449831 - L1ME3A LINE L1 -75 6095 6041 1710 163 0 11 chr11 11335439 11335715 -139447838 + AluJo SINE Alu 1 273 -39 318 282 19 10 chr11 11335723 11335826 -139447727 + MIR SINE MIR 32 135 -73 23 0 0 0 chr11 11335956 11335979 -139447574 + AT_rich Low_complexity Low_complexity 1 23 0 233 241 193 0 chr11 11336723 11336806 -139446747 + MIR SINE MIR 48 146 -62 1968 130 0 3 chr11 11336849 11337165 -139446388 - AluSx SINE Alu 0 315 1 828 147 0 22 chr11 11337306 11337437 -139446116 + AluJo/FLAM SINE Alu 1 129 -169 2419 72 3 0 chr11 11337437 11337729 -139445824 - AluSp SINE Alu -19 294 2 2287 111 7 0 chr11 11337792 11338118 -139445435 - AluSx SINE Alu 0 332 5 2273 113 7 0 chr11 11338598 11338900 -139444653 + AluSx SINE Alu 1 304 -8 195 303 131 16 chr11 11339297 11339419 -139444134 + L2 LINE L2 3137 3272 0 382 229 93 34 chr11 11340767 11340885 -139442668 - MER5A DNA MER1_type -56 133 9 594 287 19 19 chr11 11341221 11341482 -139442071 - L2 LINE L2 -2914 400 140 2343 99 3 3 chr11 11341850 11342154 -139441399 - AluSx SINE Alu -8 304 1 1594 195 7 0 chr11 11342668 11342960 -139440593 - AluJb SINE Alu -16 296 3 441 193 30 66 chr11 11343241 11343347 -139440206 + L1M4 LINE L1 4395 4494 -1652 2212 122 3 3 chr11 11343347 11343651 -139439902 + AluJb SINE Alu 1 304 -8 441 193 30 66 chr11 11343651 11343710 -139439843 + L1M4 LINE L1 4494 4554 -1592 1711 155 37 0 chr11 11343799 11344102 -139439451 + AluJb SINE Alu 1 313 0 312 349 67 7 chr11 11344194 11344343 -139439210 + MIR SINE MIR 27 184 -78 837 173 28 56 chr11 11344534 11344713 -139438840 + MER69A DNA AcHobo 2 175 -2 2387 77 13 7 chr11 11344746 11345056 -139438497 + AluSx SINE Alu 1 312 0 1960 167 92 23 chr11 11345395 11345832 -139437721 - MLT1C LTR MaLR 0 467 1 1900 151 20 59 chr11 11346119 11346509 -139437044 + THE1C LTR MaLR 1 375 0 292 268 35 81 chr11 11346529 11346727 -139436826 + MIR SINE MIR 69 257 -5 586 282 132 19 chr11 11346821 11347320 -139436233 + L2 LINE L2 2738 3299 -14 292 312 215 8 chr11 11348076 11348323 -139435230 - L2 LINE L2 -952 2362 2065 264 235 292 25 chr11 11348521 11348764 -139434789 - L2 LINE L2 -1267 2047 1740 1985 107 21 17 chr11 11349063 11349354 -139434199 - AluSp SINE Alu -21 292 1 297 243 27 0 chr11 11351566 11351640 -139431913 + MER5A DNA MER1_type 84 159 -30 1751 132 59 24 chr11 11351757 11352044 -139431509 - AluJb SINE Alu -15 297 1 195 42 0 0 chr11 11352478 11352502 -139431051 + (A)n Simple_repeat Simple_repeat 1 24 0 1984 130 10 10 chr11 11355946 11356247 -139427306 + AluSx SINE Alu 1 301 -11 24 32 0 0 chr11 11356491 11356522 -139427031 + AT_rich Low_complexity Low_complexity 1 31 0 2284 88 3 7 chr11 11358819 11359114 -139424439 - AluSx SINE Alu -18 294 1 710 201 107 12 chr11 11359540 11359709 -139423844 - MER5A DNA MER1_type -1 188 4 774 141 8 31 chr11 11359712 11359840 -139423713 - FLAM_C SINE Alu -7 126 2 244 71 0 143 chr11 11360314 11360370 -139423183 - Alu SINE Alu -170 132 85 235 179 0 75 chr11 11362123 11362190 -139421363 + GA-rich Low_complexity Low_complexity 1 62 0 23 68 0 0 chr11 11364098 11364142 -139419411 + AT_rich Low_complexity Low_complexity 1 44 0 2111 135 0 0 chr11 11364390 11364679 -139418874 - AluSx SINE Alu -21 291 3 21 36 0 0 chr11 11364681 11364709 -139418844 + AT_rich Low_complexity Low_complexity 1 28 0 1488 171 19 15 chr11 11364871 11365134 -139418419 + AluJo SINE Alu 32 295 -17 1786 161 14 0 chr11 11365135 11365415 -139418138 + AluJb SINE Alu 2 285 -27 189 242 0 55 chr11 11365635 11365726 -139417827 + L2 LINE L2 2211 2296 -1018 617 283 115 4 chr11 11365756 11366000 -139417553 + MER102b DNA MER1_type 55 325 -16 554 264 66 0 chr11 11366073 11366240 -139417313 + MIR SINE MIR 37 214 -48 2329 108 0 3 chr11 11366602 11366908 -139416645 + AluSg SINE Alu 1 305 -5 1069 174 0 6 chr11 11366974 11367152 -139416401 + MER5B DNA MER1_type 2 178 0 444 239 220 62 chr11 11367707 11367966 -139415587 - L2 LINE L2 -775 2539 2240 230 247 21 86 chr11 11368325 11368373 -139415180 - L2 LINE L2 -607 2707 2666 1978 154 7 3 chr11 11368373 11368678 -139414875 + AluJb SINE Alu 5 310 -2 230 247 21 86 chr11 11368678 11368722 -139414831 - L2 LINE L2 -648 2666 2621 1888 280 85 50 chr11 11368883 11370061 -139413492 + L2 LINE L2 2035 3235 -78 1924 168 0 3 chr11 11370098 11370402 -139413151 + AluSx SINE Alu 1 303 -9 255 226 16 0 chr11 11370475 11370537 -139413016 + L2 LINE L2 3251 3313 0 1218 173 108 138 chr11 11370773 11371294 -139412259 - MLT1D LTR MaLR 0 505 1 315 259 25 0 chr11 11371430 11371511 -139412042 - L2 LINE L2 0 3272 3190 466 244 0 0 chr11 11371531 11371621 -139411932 + MER94 DNA DNA 45 134 0 2125 117 35 132 chr11 11371945 11372206 -139411347 + Tigger2a DNA MER2_type 1 285 -2423 1976 141 0 54 chr11 11372206 11372519 -139411034 + AluJb SINE Alu 1 296 -16 824 147 0 22 chr11 11372522 11372658 -139410895 - AluJo/FLAM SINE Alu -169 133 1 2125 117 35 132 chr11 11372658 11372871 -139410682 + Tigger2a DNA MER2_type 287 433 -1 189 0 0 0 chr11 11373100 11373121 -139410432 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1939 138 0 7 chr11 11373121 11373403 -139410150 - AluSx SINE Alu -32 280 1 23 101 0 0 chr11 11373405 11373484 -139410069 + AT_rich Low_complexity Low_complexity 1 79 0 1695 107 99 12 chr11 11373490 11373772 -139409781 + AluSx SINE Alu 11 314 0 1699 158 59 33 chr11 11374058 11374362 -139409191 - AluJo SINE Alu 0 312 1 1904 169 36 2 chr11 11374439 11374853 -139408700 + L1 LINE L1 3140 3567 -2579 2409 166 98 35 chr11 11374871 11375361 -139408192 - L1 LINE L1 -2647 3499 3042 432 0 0 0 chr11 11375361 11375409 -139408144 + (TG)n Simple_repeat Simple_repeat 1 48 0 2025 114 4 4 chr11 11375416 11375688 -139407865 - AluSq SINE Alu -41 272 1 2409 166 98 35 chr11 11375688 11375850 -139407703 - L1 LINE L1 -3109 3037 2797 1241 128 190 0 chr11 11375889 11376100 -139407453 + MER21A LTR ERV1 13 263 -668 2717 146 56 79 chr11 11376106 11376675 -139406878 + MER21A LTR ERV1 376 931 0 581 198 63 0 chr11 11377356 11377467 -139406086 + FLAM_C SINE Alu 2 119 -24 842 168 0 0 chr11 11377779 11377904 -139405649 - FLAM_C SINE Alu -8 125 1 221 311 54 14 chr11 11377991 11378065 -139405488 + L2 LINE L2 3229 3305 -8 454 249 305 5 chr11 11378121 11378318 -139405235 - MIR SINE MIR -4 258 3 207 345 64 36 chr11 11378523 11378633 -139404920 - MER91A DNA MER1_type -62 134 22 863 227 0 0 chr11 11378918 11379090 -139404463 - FRAM SINE Alu -1 175 4 198 128 0 0 chr11 11379108 11379147 -139404406 + (A)n Simple_repeat Simple_repeat 1 39 0 1843 211 3 37 chr11 11379155 11379414 -139404139 + MLT1A1 LTR MaLR 1 245 -120 2189 103 10 10 chr11 11379414 11379715 -139403838 - AluSx SINE Alu -11 301 1 1843 211 3 37 chr11 11379715 11379829 -139403724 + MLT1A1 LTR MaLR 245 361 -4 22 0 0 0 chr11 11379910 11379932 -139403621 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr11 11380121 11380148 -139403405 + (A)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr11 11380324 11380350 -139403203 + AT_rich Low_complexity Low_complexity 1 26 0 605 241 0 35 chr11 11380540 11380681 -139402872 - L2 LINE L2 0 3272 3137 2312 135 21 26 chr11 11381470 11381847 -139401706 - THE1C LTR MaLR 0 375 1 10449 119 26 38 chr11 11381847 11382966 -139400587 - THE1C-int LTR MaLR 0 1580 484 2043 131 0 13 chr11 11382966 11383264 -139400289 - AluSx SINE Alu -18 294 1 10449 119 26 38 chr11 11383264 11383743 -139399810 - THE1C-int LTR MaLR -1096 484 1 2236 135 18 61 chr11 11383743 11383786 -139399767 - THE1C LTR MaLR 0 375 332 2373 82 3 0 chr11 11383786 11384091 -139399462 + AluY SINE Alu 1 306 -5 2236 135 18 61 chr11 11384091 11384439 -139399114 - THE1C LTR MaLR -43 332 1 205 291 81 12 chr11 11384719 11384805 -139398748 + MIR3 SINE MIR 104 195 -13 506 302 132 19 chr11 11384842 11385054 -139398499 - MIR SINE MIR -21 241 6 2583 54 0 0 chr11 11385230 11385528 -139398025 + AluY SINE Alu 1 298 -13 1648 194 14 0 chr11 11386014 11386308 -139397245 - AluJb SINE Alu -8 304 7 1938 125 44 0 chr11 11386610 11386907 -139396646 + AluSq SINE Alu 1 309 0 1606 193 3 10 chr11 11386972 11387106 -139396447 + AluJo SINE Alu 1 134 -178 2186 137 0 0 chr11 11387106 11387406 -139396147 + AluSx SINE Alu 1 300 -12 1606 193 3 10 chr11 11387406 11387576 -139395977 + AluJo SINE Alu 134 303 -9 345 345 79 23 chr11 11387655 11387959 -139395594 + ERVL LTR ERVL 299 619 -5145 2252 96 93 31 chr11 11388044 11388397 -139395156 - THE1C LTR MaLR 0 375 1 2174 200 107 14 chr11 11388419 11388904 -139394649 + MLT1F LTR MaLR 5 534 -8 3395 106 22 22 chr11 11389015 11389508 -139394045 + MER1A DNA MER1_type 37 529 0 343 358 0 6 chr11 11389539 11389712 -139393841 + ERVL LTR ERVL 960 1131 -4633 2024 138 14 0 chr11 11389816 11390112 -139393441 - AluSx SINE Alu -11 301 2 3863 107 24 0 chr11 11390123 11390655 -139392898 - L1PA14 LINE L1 -1 6160 5616 892 188 6 12 chr11 11390728 11390888 -139392665 - FRAM SINE Alu -17 159 1 260 268 134 31 chr11 11391482 11391609 -139391944 + ERVL LTR ERVL 1852 1991 -3663 422 224 31 10 chr11 11391611 11391709 -139391844 + ERVL LTR ERVL 4565 4664 -1100 2625 120 26 0 chr11 11391716 11392100 -139391453 - L1PA14 LINE L1 -91 6070 5677 619 243 78 34 chr11 11392152 11392358 -139391195 + MER58C DNA MER1_type 1 215 0 467 317 65 9 chr11 11392368 11392598 -139390955 + ERVL LTR ERVL 4721 4963 -801 629 154 95 53 chr11 11392790 11392927 -139390626 + L1MD3 LINE L1 7812 7959 -36 2096 109 53 0 chr11 11392927 11393211 -139390342 - AluSx SINE Alu -13 299 1 629 154 95 53 chr11 11393211 11393242 -139390311 + L1MD3 LINE L1 7959 7987 -8 654 183 17 35 chr11 11393243 11393358 -139390195 + FLAM_C SINE Alu 2 114 -29 22 35 0 0 chr11 11393376 11393405 -139390148 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr11 11393573 11393617 -139389936 + AT_rich Low_complexity Low_complexity 1 44 0 869 147 0 0 chr11 11393617 11393733 -139389820 - FLAM_C SINE Alu -15 118 3 23 0 0 0 chr11 11393958 11393981 -139389572 + AT_rich Low_complexity Low_complexity 1 23 0 1906 152 3 0 chr11 11393984 11394280 -139389273 - AluJb SINE Alu -10 302 6 192 200 0 0 chr11 11394390 11394425 -139389128 + MIR SINE MIR 195 229 -33 1586 171 36 43 chr11 11395097 11395402 -139388151 + AluJo SINE Alu 1 303 -9 2170 108 7 0 chr11 11395852 11396138 -139387415 - AluSg SINE Alu -22 288 1 1801 195 142 33 chr11 11396356 11396699 -139386854 + MLT1F1 LTR MaLR 1 411 -156 2519 61 0 0 chr11 11396699 11396996 -139386557 - AluY SINE Alu -14 297 1 1801 195 142 33 chr11 11396996 11397173 -139386380 + MLT1F1 LTR MaLR 411 567 0 384 204 159 0 chr11 11397175 11397288 -139386265 + MIR SINE MIR 117 247 -15 373 250 52 46 chr11 11397412 11397593 -139385960 - MIR SINE MIR -49 213 34 445 276 29 0 chr11 11397613 11397718 -139385835 - L2 LINE L2 -12 3301 3194 24 0 0 0 chr11 11399011 11399035 -139384518 + AT_rich Low_complexity Low_complexity 1 24 0 555 282 219 15 chr11 11399667 11400081 -139383472 + L2 LINE L2 2726 3244 -69 318 341 133 9 chr11 11400455 11400681 -139382872 - MER112 DNA MER1_type -4 256 3 1762 181 7 0 chr11 11401089 11401388 -139382165 - AluJo SINE Alu -11 301 1 1409 192 130 11 chr11 11401397 11401658 -139381895 - AluJo SINE Alu -10 292 1 376 174 257 28 chr11 11401659 11401768 -139381785 - MIR3 SINE MIR -41 167 34 1466 173 36 11 chr11 11401973 11402250 -139381303 + AluJo SINE Alu 11 294 -18 929 190 0 6 chr11 11402323 11402481 -139381072 - AluJb SINE Alu -155 157 1 195 215 65 129 chr11 11403949 11404011 -139379542 + MIR SINE MIR 161 217 -45 2140 113 0 44 chr11 11404011 11404147 -139379406 + AluSx SINE Alu 1 141 -171 1654 125 0 62 chr11 11404147 11404419 -139379134 + AluSx SINE Alu 1 255 -57 2140 113 0 44 chr11 11404419 11404601 -139378952 + AluSx SINE Alu 141 305 -7 195 215 65 129 chr11 11404601 11404631 -139378922 + MIR SINE MIR 217 247 -15 289 329 58 15 chr11 11404799 11404936 -139378617 - MIR SINE MIR -6 256 114 231 328 15 76 chr11 11405832 11405963 -139377590 - L2 LINE L2 -337 2935 2813 1869 310 52 47 chr11 11406206 11407977 -139375576 - Charlie1 DNA MER1_type -236 2525 746 814 165 0 15 chr11 11408719 11408852 -139374701 - MER58A DNA MER1_type 0 167 37 371 296 186 20 chr11 11410053 11410252 -139373301 - MIR SINE MIR -19 243 12 289 259 76 61 chr11 11411636 11411767 -139371786 - MER5A DNA MER1_type 0 189 57 23 33 0 0 chr11 11412770 11412800 -139370753 + AT_rich Low_complexity Low_complexity 1 30 0 2063 61 34 4 chr11 11413000 11413264 -139370289 - L1PA5 LINE L1 -2 6152 5881 1601 162 80 52 chr11 11413386 11413751 -139369802 + THE1C LTR MaLR 1 375 0 777 107 214 0 chr11 11413871 11414002 -139369551 + AluSp SINE Alu 153 311 -2 829 301 44 72 chr11 11414002 11414682 -139368871 + ERVL LTR ERVL 785 1445 -4319 2025 142 7 20 chr11 11415715 11416017 -139367536 - AluJb SINE Alu -14 298 1 796 176 0 0 chr11 11416101 11416232 -139367321 - FLAM_C SINE Alu 0 143 13 226 246 0 0 chr11 11416438 11416503 -139367050 - HAL1 LINE L1 0 2507 2443 341 152 3 5 chr11 11416562 11416636 -139366917 + FLAM SINE Alu 72 131 -2 2732 124 13 52 chr11 11416654 11417115 -139366438 + MER65A LTR ERV1 1 443 -2 1177 132 11 11 chr11 11417339 11417513 -139366040 + AluSg/x SINE Alu 125 298 -14 2338 101 0 0 chr11 11417513 11417809 -139365744 + AluSx SINE Alu 1 296 -16 26 0 0 0 chr11 11418142 11418168 -139365385 + AT_rich Low_complexity Low_complexity 1 26 0 1862 152 0 3 chr11 11418168 11418458 -139365095 - AluSx SINE Alu -23 289 1 203 183 67 50 chr11 11418544 11418604 -139364949 - MIR SINE MIR -98 164 104 181 248 191 57 chr11 11419069 11419210 -139364343 + MIR SINE MIR 56 215 -47 28 61 0 0 chr11 11419561 11419610 -139363943 + AT_rich Low_complexity Low_complexity 1 49 0 671 168 55 45 chr11 11419720 11419752 -139363801 + L1 LINE L1 4614 4644 -1502 2378 100 0 0 chr11 11419752 11420052 -139363501 + AluSc SINE Alu 1 300 -9 671 168 55 45 chr11 11420052 11420351 -139363202 + L1 LINE L1 4644 5202 -944 1404 173 79 11 chr11 11420354 11420620 -139362933 + AluJo SINE Alu 16 299 -13 5231 155 19 28 chr11 11420620 11421279 -139362274 + L1MD1 LINE L1 5279 5928 -314 1650 121 55 8 chr11 11421279 11421535 -139362018 - AluSx SINE Alu -44 268 1 5231 155 19 28 chr11 11421535 11421832 -139361721 + L1MD1 LINE L1 5928 6226 -16 409 201 87 27 chr11 11421891 11422040 -139361513 + L1MC5 LINE L1 7783 7940 -21 22 0 0 0 chr11 11422054 11422076 -139361477 + AT_rich Low_complexity Low_complexity 1 22 0 355 308 100 51 chr11 11422253 11422744 -139360809 + L1M4 LINE L1 4492 5006 -1140 1923 177 99 48 chr11 11422915 11423412 -139360141 + LTR64 LTR ERVK 20 541 -17 1045 171 0 0 chr11 11423457 11423621 -139359932 - AluJb SINE Alu -13 299 136 1035 121 54 0 chr11 11423731 11423880 -139359673 - LTR47A LTR ERVL -295 157 1 495 234 39 19 chr11 11423880 11424034 -139359519 + L1 LINE L1 2771 2927 -3219 539 283 67 87 chr11 11424132 11424521 -139359032 - MLT1I LTR MaLR -13 396 16 510 176 0 0 chr11 11426134 11426219 -139357334 + Charlie1a DNA MER1_type 57 141 -1314 4941 169 60 57 chr11 11426219 11427283 -139356270 + MER11C LTR ERVK 1 1067 -4 2625 113 84 9 chr11 11426843 11427284 -139356269 + MER11A LTR ERVK 789 1262 -4 593 241 147 75 chr11 11427336 11427656 -139355897 - MLT1A1 LTR MaLR -22 343 1 * 6204 164 52 15 chr11 11427656 11428873 -139354680 + Charlie1a DNA MER1_type 193 1455 0 924 229 233 7 chr11 11429483 11429784 -139353769 + MLT1K LTR MaLR 218 586 -2 2378 89 0 16 chr11 11430055 11430368 -139353185 - AluSc SINE Alu -1 308 1 237 146 0 0 chr11 11430688 11430736 -139352817 + (TG)n Simple_repeat Simple_repeat 2 49 0 503 253 129 0 chr11 11430959 11431129 -139352424 + MIR SINE MIR 1 192 -70 523 239 100 32 chr11 11431421 11431672 -139351881 + L1ME4a LINE L1 5617 5884 -237 1674 169 14 27 chr11 11431677 11431972 -139351581 + AluJo SINE Alu 1 291 -21 25 51 0 0 chr11 11432304 11432343 -139351210 + AT_rich Low_complexity Low_complexity 1 39 0 187 339 0 0 chr11 11432377 11432442 -139351111 + MIR SINE MIR 186 250 -12 467 321 75 0 chr11 11432459 11432671 -139350882 - MIR SINE MIR -22 240 13 333 47 0 0 chr11 11434738 11434781 -139348772 + (TG)n Simple_repeat Simple_repeat 2 44 0 306 301 0 12 chr11 11435612 11435695 -139347858 - MLT1K LTR MaLR -437 151 70 36 23 0 0 chr11 11436983 11437026 -139346527 + AT_rich Low_complexity Low_complexity 1 43 0 467 281 118 0 chr11 11437143 11437278 -139346275 + MER117 DNA MER1_type 10 160 -37 589 257 76 76 chr11 11437367 11437709 -139345844 - MLT1I LTR MaLR -26 383 42 964 107 5 131 chr11 11437859 11438065 -139345488 + MER4B LTR ERV1 3 182 -428 219 333 0 65 chr11 11438150 11438258 -139345295 - L2 LINE L2 -12 3301 3201 409 308 159 20 chr11 11438286 11438682 -139344871 + L2 LINE L2 1231 1681 -1633 608 304 48 32 chr11 11438804 11439006 -139344547 + L2 LINE L2 1681 1891 -1423 6648 73 45 0 chr11 11439006 11439964 -139343589 - L1PA13 LINE L1 -3 6160 5195 608 304 48 32 chr11 11439964 11440077 -139343476 + L2 LINE L2 1891 2001 -1313 204 40 0 0 chr11 11440167 11440192 -139343361 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 5011 90 9 36 chr11 11440208 11440908 -139342645 + LTR8 LTR ERV1 1 681 -10 571 304 185 5 chr11 11440982 11441393 -139342160 + L2 LINE L2 2445 2929 -385 1672 210 8 20 chr11 11441519 11441919 -139341634 + L1M4 LINE L1 2380 2774 -3372 1045 131 98 61 chr11 11441920 11442014 -139341539 - LTR47A LTR ERVL 0 452 363 1855 166 3 3 chr11 11442014 11442315 -139341238 - AluJo SINE Alu -11 301 1 1045 131 98 61 chr11 11442315 11442434 -139341119 - LTR47A LTR ERVL -89 363 231 2178 136 0 0 chr11 11442551 11442903 -139340650 - AluSx SINE Alu 0 352 1 1241 166 70 23 chr11 11442904 11442998 -139340555 - L1M2 LINE L1 -4847 2002 1914 2548 48 0 13 chr11 11442998 11443310 -139340243 - AluY SINE Alu -3 308 1 1241 166 70 23 chr11 11443310 11443516 -139340037 - L1M2 LINE L1 -4935 1914 1688 1170 193 60 0 chr11 11443533 11443751 -139339802 - AluJo SINE Alu -27 285 55 1930 137 33 10 chr11 11443789 11444088 -139339465 - AluSx SINE Alu -6 306 1 298 215 93 47 chr11 11444088 11444195 -139339358 - L1ME LINE L1 -5956 114 3 8674 175 29 11 chr11 11444223 11445008 -139338545 - L1PB2 LINE L1 0 6151 5382 1699 166 53 3 chr11 11445008 11445291 -139338262 - AluJb SINE Alu -15 297 1 8674 175 29 11 chr11 11445291 11447239 -139336314 - L1PB2 LINE L1 -769 5382 3374 653 283 109 32 chr11 11447267 11447815 -139335738 - L1M4 LINE L1 -1926 4220 3641 254 180 0 33 chr11 11447889 11447950 -139335603 - MIR SINE MIR -94 168 110 782 146 0 36 chr11 11448250 11448387 -139335166 - FLAM_C SINE Alu -1 132 1 738 236 104 73 chr11 11448452 11449012 -139334541 + LTR50 LTR ERVL 1 462 -61 255 213 20 27 chr11 11449131 11449281 -139334272 + CT-rich Low_complexity Low_complexity 1 149 0 383 307 17 28 chr11 11449542 11449721 -139333832 + CT-rich Low_complexity Low_complexity 1 177 0 340 219 73 49 chr11 11450766 11450889 -139332664 - MIR SINE MIR -107 155 30 2056 107 4 0 chr11 11451178 11451450 -139332103 + AluSx SINE Alu 1 273 -39 1125 153 149 89 chr11 11451559 11451840 -139331713 - AluJo SINE Alu -4 298 1 462 291 27 85 chr11 11452695 11452832 -139330721 + MIR SINE MIR 20 137 -125 1900 108 52 4 chr11 11452832 11453101 -139330452 + AluSq SINE Alu 5 286 -27 462 291 27 85 chr11 11453101 11453221 -139330332 + MIR SINE MIR 137 262 0 196 279 0 33 chr11 11453612 11453673 -139329880 - MIR SINE MIR -126 82 24 2094 123 0 7 chr11 11454911 11455204 -139328349 + AluSx SINE Alu 1 291 -21 815 238 33 9 chr11 11455226 11455440 -139328113 - MIR SINE MIR -12 250 32 240 277 117 0 chr11 11455586 11455680 -139327873 - L2 LINE L2 -1 3312 3208 2122 125 3 13 chr11 11456410 11456714 -139326839 + AluSx SINE Alu 1 301 -11 320 137 0 0 chr11 11456862 11456913 -139326640 + Alu SINE Alu 250 300 -2 2607 141 54 21 chr11 11457158 11457570 -139325983 + L1MA9 LINE L1 5815 6247 -65 2199 123 3 0 chr11 11457570 11457872 -139325681 + AluSc SINE Alu 1 303 -6 2607 141 54 21 chr11 11457872 11457941 -139325612 + L1MA9 LINE L1 6247 6312 0 897 315 43 54 chr11 11457973 11458433 -139325120 + MLT1K LTR MaLR 132 586 -2 414 196 9 45 chr11 11458617 11458729 -139324824 + MIR SINE MIR 148 255 -7 1644 156 52 7 chr11 11459284 11459577 -139323976 - AluJb SINE Alu 0 308 4 221 217 14 14 chr11 11459591 11459660 -139323893 + MIR SINE MIR 92 160 -102 820 267 112 21 chr11 11459684 11460059 -139323494 + MLT1I LTR MaLR 1 409 0 279 347 14 4 chr11 11460205 11460346 -139323207 + L1ME4a LINE L1 5455 5596 -617 548 250 96 35 chr11 11460374 11460766 -139322787 + L1ME4a LINE L1 5689 6119 -2 214 170 43 0 chr11 11460797 11460860 -139322693 + (CAGAGA)n Simple_repeat Simple_repeat 1 65 0 1431 203 36 0 chr11 11461123 11461424 -139322129 + MER33 DNA MER1_type 13 324 0 2428 132 54 12 chr11 11462204 11462613 -139320940 + MSTB LTR MaLR 1 426 0 9537 182 19 0 chr11 11462613 11464233 -139319320 + MSTB-int LTR MaLR 1 1651 0 2308 136 39 13 chr11 11464233 11464622 -139318931 + MSTB LTR MaLR 1 399 -27 1299 161 28 0 chr11 11464648 11464859 -139318694 - AluJo SINE Alu -11 301 85 244 105 79 0 chr11 11464860 11464898 -139318655 + MSTB LTR MaLR 386 426 0 2282 107 10 0 chr11 11464954 11465253 -139318300 + AluSx SINE Alu 1 302 -10 227 171 0 100 chr11 11465260 11465330 -139318223 + L1ME4a LINE L1 5369 5431 -690 838 266 119 16 chr11 11465446 11465825 -139317728 + L1ME4a LINE L1 5493 5910 -211 1929 173 73 67 chr11 11466006 11466422 -139317131 + MLT1D LTR MaLR 24 445 -60 1995 149 10 10 chr11 11466422 11466717 -139316836 + AluJb SINE Alu 1 295 -17 1929 173 73 67 chr11 11466717 11466779 -139316774 + MLT1D LTR MaLR 445 505 0 453 19 0 0 chr11 11467420 11467474 -139316079 + (CA)n Simple_repeat Simple_repeat 1 54 0 230 267 0 12 chr11 11467653 11467739 -139315814 + GA-rich Low_complexity Low_complexity 4 88 0 2466 232 65 65 chr11 11468494 11469269 -139314284 - MER21B LTR ERV1 -70 793 19 443 194 9 83 chr11 11469267 11469375 -139314178 - MER21B LTR ERV1 -757 106 7 * 201 74 0 0 chr11 11469475 11469502 -139314051 + (TC)n Simple_repeat Simple_repeat 1 27 0 283 200 31 15 chr11 11469622 11469687 -139313866 - MLT1K LTR MaLR -342 246 181 929 254 88 3 chr11 11469800 11470083 -139313470 - MER46C DNA MER2_type -22 316 10 551 208 0 0 chr11 11470144 11470250 -139313303 + MER5A DNA MER1_type 4 109 -80 235 206 255 10 chr11 11470169 11470271 -139313282 - MER5A DNA MER1_type -16 173 47 * 2454 89 0 0 chr11 11470649 11470953 -139312600 + AluSq SINE Alu 1 304 -9 2326 164 42 22 chr11 11471872 11472220 -139311333 + MLT1C LTR MaLR 1 362 -105 2992 122 106 76 chr11 11472220 11472836 -139310717 - MER51A LTR ERV1 0 634 1 2326 164 42 22 chr11 11472836 11472945 -139310608 + MLT1C LTR MaLR 362 467 0 337 329 122 18 chr11 11473250 11473578 -139309975 + L2 LINE L2 2373 2734 -580 230 345 12 12 chr11 11473878 11473962 -139309591 - L2 LINE L2 -22 3291 3208 * 352 316 207 53 chr11 11473949 11474215 -139309338 + L2 LINE L2 2965 3271 -1 679 281 60 50 chr11 11475020 11475583 -139307970 + L1MC4 LINE L1 7317 8016 -26 886 185 11 34 chr11 11475626 11475804 -139307749 + FRAM SINE Alu 1 173 -3 2433 41 45 0 chr11 11476979 11477269 -139306284 + AluY SINE Alu 1 303 -8 2152 132 3 0 chr11 11477897 11478200 -139305353 - AluSg SINE Alu -6 304 1 333 71 0 0 chr11 11478393 11478435 -139305118 + 5S rRNA rRNA 2 43 -78 1886 142 30 48 chr11 11478629 11478927 -139304626 + L1MB3 LINE L1 5846 6139 -32 4229 102 29 46 chr11 11478927 11479284 -139304269 + L1MA5A LINE L1 5616 5964 -333 2414 68 0 40 chr11 11479284 11479608 -139303945 + AluY SINE Alu 1 311 0 4229 102 29 46 chr11 11479608 11479932 -139303621 + L1MA5A LINE L1 5964 6292 -5 1886 142 30 48 chr11 11479932 11479965 -139303588 + L1MB3 LINE L1 6139 6171 0 401 258 67 8 chr11 11480455 11480575 -139302978 - MIR3 SINE MIR -72 136 10 284 244 24 55 chr11 11480809 11480936 -139302617 + GA-rich Low_complexity Low_complexity 3 125 0 217 273 45 0 chr11 11480999 11481065 -139302488 - L2 LINE L2 -4 3309 3241 1711 195 17 0 chr11 11481133 11481435 -139302118 + AluJo SINE Alu 1 307 -5 308 271 0 0 chr11 11481468 11481553 -139302000 + MIR SINE MIR 92 176 -86 486 282 14 21 chr11 11481804 11481946 -139301607 + MER5A DNA MER1_type 28 168 -21 252 247 84 84 chr11 11481969 11482147 -139301406 + L2 LINE L2 2913 3090 -182 842 161 36 12 chr11 11483233 11483401 -139300152 - MER5A DNA MER1_type 0 189 18 2220 169 111 31 chr11 11484001 11484184 -139299369 - MLT1D LTR MaLR 0 505 338 1668 164 45 14 chr11 11484184 11484470 -139299083 - AluJo SINE Alu -17 295 1 2220 169 111 31 chr11 11484470 11484735 -139298818 - MLT1D LTR MaLR -167 338 21 510 280 78 10 chr11 11484976 11485169 -139298384 - L1ME LINE L1 -301 5820 5615 345 179 36 0 chr11 11485219 11485275 -139298278 - MLT1D LTR MaLR -447 58 1 186 274 51 68 chr11 11485276 11485393 -139298160 + MIR SINE MIR 117 231 -31 204 40 0 0 chr11 11485503 11485528 -139298025 + (TG)n Simple_repeat Simple_repeat 1 25 0 458 312 29 29 chr11 11485623 11485793 -139297760 - MER5B DNA MER1_type -2 176 7 387 0 0 0 chr11 11486628 11486671 -139296882 + (CA)n Simple_repeat Simple_repeat 1 43 0 737 301 7 1 chr11 11486683 11486888 -139296665 - MIR SINE MIR -56 206 2 406 211 24 0 chr11 11487219 11487342 -139296211 + CT-rich Low_complexity Low_complexity 2 127 0 244 122 0 61 chr11 11488123 11488172 -139295381 - MIR SINE MIR -57 151 106 1803 214 52 33 chr11 11488486 11488944 -139294609 + MLT1C LTR MaLR 1 467 0 498 311 80 64 chr11 11489540 11489930 -139293623 + MLT1L LTR MaLR 159 586 -29 3123 190 25 11 chr11 11489930 11490488 -139293065 + MLT1F1 LTR MaLR 1 566 -1 498 311 80 64 chr11 11490488 11490511 -139293042 + MLT1L LTR MaLR 586 607 -8 474 115 26 0 chr11 11491050 11491128 -139292425 - L1MA5 LINE L1 -5 6295 6216 274 339 197 0 chr11 11491823 11491950 -139291603 + L2 LINE L2 3112 3263 -9 639 259 7 0 chr11 11493603 11493750 -139289803 + MER5B DNA MER1_type 1 148 -30 234 235 71 35 chr11 11493691 11493776 -139289777 - MER5A DNA MER1_type -90 99 12 * 1448 230 54 48 chr11 11494491 11494969 -139288584 - HAL1 LINE L1 -6 2501 2021 33641 98 15 58 chr11 11494984 11501342 -139282211 - L1PA7 LINE L1 -67 6087 12 801 264 129 25 chr11 11501357 11501720 -139281833 - HAL1 LINE L1 -475 2032 1632 1053 275 62 10 chr11 11501732 11502023 -139281530 - MER45C DNA AcHobo -647 306 1 372 274 119 79 chr11 11502107 11502381 -139281172 + L1M2 LINE L1 4972 5233 -1079 1890 157 7 3 chr11 11502381 11502668 -139280885 + AluJo SINE Alu 1 288 -24 372 274 119 79 chr11 11502668 11503215 -139280338 + L1M2 LINE L1 5233 5825 -487 2017 132 184 11 chr11 11503232 11503596 -139279957 + MSTA LTR MaLR 1 427 -1 2685 121 2 48 chr11 11503599 11504036 -139279517 + MSTA-int LTR MaLR 3 419 -1161 1007 185 0 0 chr11 11504062 11504219 -139279334 + FRAM SINE Alu 1 153 -23 249 246 109 9 chr11 11504225 11504335 -139279218 + L1M4 LINE L1 5249 5369 -777 6945 145 21 29 chr11 11504364 11505527 -139278026 + MSTA-int LTR MaLR 427 1580 0 2092 128 177 11 chr11 11505527 11505894 -139277659 + MSTA LTR MaLR 1 428 0 5419 247 80 26 chr11 11506715 11508311 -139275242 + L1M3c LINE L1 1359 2968 -4528 * 8661 230 85 13 chr11 11508295 11510990 -139272563 + L1M3c LINE L1 2871 5369 -2196 2221 105 0 13 chr11 11510990 11511294 -139272259 + AluSq SINE Alu 1 300 -13 8661 230 85 13 chr11 11511294 11511481 -139272072 + L1M3c LINE L1 5369 5541 -2024 1801 181 0 25 chr11 11511481 11511795 -139271758 + AluJb SINE Alu 1 306 -6 8661 230 85 13 chr11 11511795 11512070 -139271483 + L1M3c LINE L1 5541 5795 -1770 180 0 0 0 chr11 11512070 11512090 -139271463 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8661 230 85 13 chr11 11512090 11512224 -139271329 + L1M3c LINE L1 5795 6591 -974 354 45 0 0 chr11 11513070 11513114 -139270439 + (GA)n Simple_repeat Simple_repeat 1 44 0 1020 210 48 24 chr11 11513778 11514026 -139269527 - MIR SINE MIR -7 255 2 324 250 169 29 chr11 11514033 11514169 -139269384 - MIR3 SINE MIR -31 177 23 517 304 78 11 chr11 11514748 11514939 -139268614 - MIR SINE MIR -10 252 49 225 280 0 0 chr11 11515067 11515117 -139268436 + (CATA)n Simple_repeat Simple_repeat 3 52 0 526 339 38 29 chr11 11515139 11515378 -139268175 - MIR SINE MIR 0 262 22 287 354 23 0 chr11 11515488 11515618 -139267935 + L2 LINE L2 2921 3053 -219 482 185 0 0 chr11 11515760 11515841 -139267712 - LTR40a LTR ERVL -7 512 432 180 338 0 0 chr11 11515863 11515931 -139267622 + L2 LINE L2 3203 3270 -2 613 243 37 0 chr11 11516153 11516289 -139267264 + FLAM_A SINE Alu 1 141 -1 256 250 0 44 chr11 11516292 11516360 -139267193 + G-rich Low_complexity Low_complexity 4 68 0 303 229 98 16 chr11 11516406 11516528 -139267025 - FRAM SINE Alu -29 137 6 26 50 0 0 chr11 11516788 11516828 -139266725 + AT_rich Low_complexity Low_complexity 1 40 0 546 281 25 12 chr11 11517018 11517178 -139266375 - MER20B DNA MER1_type -621 162 1 1837 33 0 24 chr11 11517182 11517395 -139266158 + L1PA3 LINE L1 5948 6155 0 3263 190 52 50 chr11 11517531 11518335 -139265218 - L1MD2 LINE L1 -1 6358 5553 2459 68 0 3 chr11 11518360 11518669 -139264884 - AluY SINE Alu -3 308 1 1402 174 39 12 chr11 11518670 11518928 -139264625 - L1MC/D LINE L1 -425 5817 5553 614 234 30 41 chr11 11518945 11519142 -139264411 - L1MC/D LINE L1 -816 5330 5136 25429 87 8 21 chr11 11519242 11522826 -139260727 - L1P LINE L1 -2004 4142 606 460 209 48 0 chr11 11522827 11522932 -139260621 - L1 LINE L1 -813 5333 5224 270 316 13 0 chr11 11523228 11523307 -139260246 - L2 LINE L2 -217 3055 2976 200 256 0 0 chr11 11523442 11523485 -139260068 + L3 LINE CR1 1112 1154 -423 611 245 92 22 chr11 11524056 11524240 -139259313 + Charlie8 DNA MER1_type 306 502 -1915 27 29 0 0 chr11 11525144 11525178 -139258375 + AT_rich Low_complexity Low_complexity 1 34 0 692 252 124 18 chr11 11526929 11527155 -139256398 + MIR SINE MIR 13 262 0 1945 236 35 27 chr11 11528659 11529146 -139254407 + MLT1D LTR MaLR 1 491 -14 3363 195 75 10 chr11 11529790 11530578 -139252975 - L1MC4 LINE L1 0 8042 7204 1308 159 49 4 chr11 11530579 11530987 -139252566 - LTR54 LTR ERV1 0 510 2 1449 209 62 57 chr11 11530988 11531168 -139252385 - L1MC4 LINE L1 -838 7204 7026 2357 99 10 0 chr11 11531168 11531470 -139252083 - AluSq SINE Alu -8 305 1 1449 209 62 57 chr11 11531470 11531713 -139251840 - L1MC4 LINE L1 -1016 7026 6703 1068 153 45 0 chr11 11531715 11531892 -139251661 + AluJo SINE Alu 1 185 -127 518 88 0 0 chr11 11531898 11531966 -139251587 + AluS SINE Alu 23 90 -222 3183 202 39 14 chr11 11531972 11532670 -139250883 - L1MC4a LINE L1 -1779 6029 5315 619 230 0 43 chr11 11532678 11532817 -139250736 - FLAM_A SINE Alu 0 133 1 2304 82 3 7 chr11 11532866 11533160 -139250393 - AluY SINE Alu -18 293 1 219 279 96 39 chr11 11533903 11534007 -139249546 + L2 LINE L2 3150 3259 -13 583 298 47 62 chr11 11534020 11534441 -139249112 - L2 LINE L2 -40 3232 2806 430 302 95 0 chr11 11534441 11534620 -139248933 + MER91A DNA MER1_type 1 196 0 583 298 47 62 chr11 11534620 11534665 -139248888 - L2 LINE L2 -466 2806 2770 844 185 26 32 chr11 11534665 11534854 -139248699 - MER5A DNA MER1_type 0 189 2 583 298 47 62 chr11 11534854 11534887 -139248666 - L2 LINE L2 -502 2770 2738 198 0 0 0 chr11 11535333 11535355 -139248198 + (TG)n Simple_repeat Simple_repeat 2 23 0 964 85 0 14 chr11 11535615 11535756 -139247797 - MER85 DNA T2_type 0 139 1 250 197 79 13 chr11 11536961 11537037 -139246516 + MIR SINE MIR 105 185 -77 700 232 40 15 chr11 11537733 11537931 -139245622 + L1ME3A LINE L1 3 205 -5914 342 0 0 0 chr11 11537934 11537972 -139245581 + (TG)n Simple_repeat Simple_repeat 2 39 0 383 288 37 42 chr11 11538075 11538266 -139245287 + L1ME3A LINE L1 682 871 -5248 1739 107 37 0 chr11 11538391 11538634 -139244919 - AluSc SINE Alu -57 252 1 530 210 64 13 chr11 11538636 11538793 -139244760 + L1ME3A LINE L1 903 1067 -5052 204 97 0 0 chr11 11538796 11538827 -139244726 + (TG)n Simple_repeat Simple_repeat 2 32 0 216 271 0 0 chr11 11538871 11538919 -139244634 + (TG)n Simple_repeat Simple_repeat 1 48 0 650 311 102 44 chr11 11538927 11539894 -139243659 + L1ME3A LINE L1 1131 1746 -744 2386 94 0 3 chr11 11539901 11540208 -139243345 + AluSx SINE Alu 1 306 -6 1010 276 104 42 chr11 11540303 11541261 -139242292 + L1ME3A LINE L1 2237 3254 -2875 1187 268 136 35 chr11 11541412 11541868 -139241685 - REP3 LTR ERV -47 515 14 1029 140 6 0 chr11 11541868 11542039 -139241514 - L1P LINE L1 -1733 4413 4242 226 174 0 0 chr11 11542036 11542082 -139241471 + L1P LINE L1 4803 4848 -1298 * 538 279 124 21 chr11 11542170 11542590 -139240963 + L1ME3A LINE L1 4742 5204 -925 292 272 95 17 chr11 11542615 11542890 -139240663 + L1ME3A LINE L1 5240 5592 -543 1398 218 122 26 chr11 11542893 11543360 -139240193 - LTR33 LTR ERVL 0 521 10 584 299 26 29 chr11 11543384 11543692 -139239861 + L1ME3A LINE L1 5606 5912 -241 22 0 0 0 chr11 11543831 11543853 -139239700 + AT_rich Low_complexity Low_complexity 1 22 0 239 252 36 18 chr11 11543862 11543973 -139239580 + L1MC4 LINE L1 7929 8041 -1 810 244 119 5 chr11 11544061 11544262 -139239291 - MER58A DNA MER1_type 0 224 1 2275 103 0 31 chr11 11544315 11544636 -139238917 - AluSx SINE Alu -1 311 1 230 211 35 18 chr11 11545096 11545153 -139238400 - MLT1G1 LTR MaLR 0 595 538 222 200 0 20 chr11 11545451 11545501 -139238052 + MIR SINE MIR 192 240 -22 439 200 0 12 chr11 11545540 11545620 -139237933 + AluJ/FLAM SINE Alu 4 82 -230 266 158 73 37 chr11 11546068 11546150 -139237403 + (CTGGGG)n Simple_repeat Simple_repeat 5 89 0 931 218 49 0 chr11 11546331 11546556 -139236997 - MIR SINE MIR -11 251 16 387 252 149 7 chr11 11546583 11546735 -139236818 - MIR3 SINE MIR -31 177 4 880 289 42 60 chr11 11547514 11548016 -139235537 + L3 LINE CR1 822 1314 -263 221 312 38 37 chr11 11548018 11548166 -139235387 + MIR SINE MIR 4 153 -83 1867 232 131 77 chr11 11549528 11550847 -139232706 - L1MC5 LINE L1 -398 7957 6525 598 283 48 54 chr11 11550968 11551304 -139232249 - LTR16C LTR ERVL 0 491 158 1646 266 42 24 chr11 11551564 11552113 -139231440 - L1MC5 LINE L1 -1871 6331 5773 595 276 39 6 chr11 11552402 11552583 -139230970 - MIR SINE MIR -71 191 5 230 335 116 6 chr11 11553161 11553334 -139230219 + MIR SINE MIR 56 247 -15 2791 133 22 27 chr11 11554895 11555494 -139228059 - MER4E LTR ERV1 0 766 1 331 280 75 94 chr11 11555760 11556174 -139227379 - L2 LINE L2 -38 3234 2829 965 203 112 0 chr11 11556339 11556536 -139227017 + MER58A DNA MER1_type 1 219 -5 288 297 102 0 chr11 11557276 11557394 -139226159 - L3 LINE CR1 -268 1309 1180 8330 213 47 38 chr11 11558034 11560522 -139223031 - L1MC5 LINE L1 -1147 5393 2929 2363 92 3 0 chr11 11560522 11560825 -139222728 - AluSq SINE Alu -9 304 1 8330 213 47 38 chr11 11560825 11561700 -139221853 - L1MC5 LINE L1 -3611 2929 2063 798 167 8 0 chr11 11561700 11561832 -139221721 + FLAM_C SINE Alu 1 133 0 8330 213 47 38 chr11 11561832 11562242 -139221311 - L1MC5 LINE L1 -4477 2063 1658 2404 95 0 7 chr11 11562242 11562547 -139221006 - AluY SINE Alu -8 303 1 8330 213 47 38 chr11 11562547 11563458 -139220095 - L1MC5 LINE L1 -4882 1658 664 2507 167 142 2 chr11 11563478 11563928 -139219625 + MLT2B2 LTR ERVL 1 513 -2 2196 209 12 39 chr11 11563929 11564416 -139219137 - L1MC5 LINE L1 -6059 481 8 13639 113 56 37 chr11 11565392 11566512 -139217041 + Tigger1 DNA MER2_type 6 1103 -1315 1786 136 73 3 chr11 11566512 11566842 -139216711 + L1MA5 LINE L1 5948 6300 0 13639 113 56 37 chr11 11566842 11567140 -139216413 + Tigger1 DNA MER2_type 1103 1394 -1024 1522 107 236 8 chr11 11567140 11567382 -139216171 - AluSp SINE Alu -14 299 3 13639 113 56 37 chr11 11567382 11568166 -139215387 + Tigger1 DNA MER2_type 1394 2251 -167 981 182 12 0 chr11 11568203 11568368 -139215185 - FRAM SINE Alu -12 164 1 1288 152 0 5 chr11 11568369 11568566 -139214987 + Tigger1 DNA MER2_type 2221 2416 -2 314 224 95 43 chr11 11568811 11568927 -139214626 + MLT2F LTR ERVL 39 160 -503 1630 180 131 13 chr11 11569277 11569490 -139214063 - MLT1C LTR MaLR -34 415 228 213 108 0 0 chr11 11569490 11569527 -139214026 + (TG)n Simple_repeat Simple_repeat 2 38 0 1630 180 131 13 chr11 11569527 11569701 -139213852 - MLT1C LTR MaLR -221 228 1 199 304 167 11 chr11 11569701 11569977 -139213576 - L2 LINE L2 -988 2326 2008 474 237 106 85 chr11 11571470 11571753 -139211800 - LTR16A LTR ERVL -99 351 63 1317 197 66 71 chr11 11571776 11572156 -139211397 + MLT1B LTR MaLR 2 379 -11 393 39 0 0 chr11 11572246 11572297 -139211256 + (TC)n Simple_repeat Simple_repeat 1 51 0 281 340 10 0 chr11 11572406 11572509 -139211044 - MLT1K LTR MaLR -324 264 161 1782 173 0 23 chr11 11572637 11572938 -139210615 + AluJo SINE Alu 1 294 -18 372 261 147 25 chr11 11572946 11573103 -139210450 + MIR SINE MIR 73 248 -14 279 228 38 0 chr11 11573259 11573338 -139210215 - MIR SINE MIR -120 142 61 229 364 70 7 chr11 11574193 11574336 -139209217 + MIR SINE MIR 18 169 -93 1037 241 24 16 chr11 11574562 11574882 -139208671 + L1ME3 LINE L1 5851 6183 -1 207 245 19 0 chr11 11574919 11574972 -139208581 + (TTA)n Simple_repeat Simple_repeat 1 54 0 1233 153 39 39 chr11 11575121 11575350 -139208203 - MER2 DNA MER2_type -113 232 4 360 0 0 0 chr11 11575353 11575393 -139208160 + (TG)n Simple_repeat Simple_repeat 1 40 0 1296 234 124 30 chr11 11575424 11575898 -139207655 + MLT1F1 LTR MaLR 49 567 0 252 247 118 21 chr11 11575898 11575991 -139207562 + MLT1F-int LTR MaLR 1 102 -1269 6773 151 35 42 chr11 11576022 11577273 -139206280 - Ricksha_b DNA DNA 0 1254 13 806 259 17 44 chr11 11577300 11577372 -139206181 + MLT1F-int LTR MaLR 293 365 -1006 1417 209 23 67 chr11 11577372 11577587 -139205966 - MLT1A2 LTR MaLR -4 370 178 2114 136 13 3 chr11 11577587 11577895 -139205658 - AluJb SINE Alu -1 311 1 1417 209 23 67 chr11 11577895 11578066 -139205487 - MLT1A2 LTR MaLR -196 178 1 806 259 17 44 chr11 11578066 11578287 -139205266 + MLT1F-int LTR MaLR 365 578 -793 713 124 0 0 chr11 11578732 11578837 -139204716 + AluSp/q SINE Alu 207 311 -2 596 282 30 101 chr11 11578948 11579384 -139204169 + MLT1F-int LTR MaLR 961 1365 -6 2237 176 79 30 chr11 11579400 11579895 -139203658 + MLT1F LTR MaLR 24 542 0 2246 90 3 30 chr11 11580383 11580683 -139202870 + AluSg SINE Alu 1 292 -18 236 255 53 21 chr11 11580896 11580990 -139202563 + MIR3 SINE MIR 109 205 -3 2366 167 64 52 chr11 11581501 11582015 -139201538 - MLT2B1 LTR ERVL 0 520 1 235 267 171 0 chr11 11583986 11584091 -139199462 + MIR3 SINE MIR 14 136 -72 32 0 0 0 chr11 11584200 11584232 -139199321 + AT_rich Low_complexity Low_complexity 1 32 0 5114 128 16 37 chr11 11584406 11584503 -139199050 + L1MA9 LINE L1 5428 5526 -786 2079 130 0 17 chr11 11584503 11584802 -139198751 - AluSx SINE Alu -18 294 1 5114 128 16 37 chr11 11584802 11585073 -139198480 + L1MA9 LINE L1 5526 5801 -511 7295 123 38 22 chr11 11585073 11585991 -139197562 - Tigger3b DNA MER2_type -1797 1231 288 2376 96 0 6 chr11 11585991 11586304 -139197249 + AluSx SINE Alu 1 311 -1 7295 123 38 22 chr11 11586304 11586597 -139196956 - Tigger3b DNA MER2_type -2740 288 1 186 103 0 0 chr11 11586600 11586629 -139196924 + (CA)n Simple_repeat Simple_repeat 2 30 0 5114 128 16 37 chr11 11586629 11586875 -139196678 + L1MA9 LINE L1 5803 6053 -259 2506 69 3 0 chr11 11586875 11587179 -139196374 - AluSc SINE Alu -4 305 1 5114 128 16 37 chr11 11587179 11587453 -139196100 + L1MA9 LINE L1 6053 6303 -9 802 287 146 21 chr11 11587538 11588128 -139195425 - L1ME4a LINE L1 -6 6115 5447 305 318 26 20 chr11 11588280 11588431 -139195122 - MIR SINE MIR -51 211 60 306 299 37 9 chr11 11588605 11588712 -139194841 + MIR SINE MIR 19 128 -80 617 211 7 35 chr11 11589775 11589917 -139193636 - L2 LINE L2 -3 3310 3173 458 232 138 0 chr11 11590153 11590291 -139193262 - MIR SINE MIR -29 233 77 288 309 62 31 chr11 11591145 11591339 -139192214 - MIR SINE MIR -56 206 7 2335 161 108 68 chr11 11591600 11592145 -139191408 - MLT1F1 LTR MaLR 0 567 1 192 208 21 0 chr11 11593690 11593738 -139189815 + L2 LINE L2 3265 3313 0 496 160 26 0 chr11 11593895 11594052 -139189501 + CT-rich Low_complexity Low_complexity 1 161 0 5917 120 11 6 chr11 11594101 11595871 -139187682 + L1PA14 LINE L1 4411 6161 0 5687 243 156 24 chr11 11595880 11597199 -139186354 - HAL1 LINE L1 -5 2502 1359 2281 58 24 7 chr11 11597199 11597493 -139186060 - AluY SINE Alu -12 299 1 5687 243 156 24 chr11 11597493 11598288 -139185265 - HAL1 LINE L1 -1148 1359 108 389 280 101 32 chr11 11598684 11598873 -139184680 + MIR SINE MIR 5 206 -56 696 229 124 14 chr11 11598892 11599102 -139184451 + MIR SINE MIR 1 233 -29 684 238 99 0 chr11 11599126 11599328 -139184225 + MIR SINE MIR 3 224 -38 272 246 15 23 chr11 11599366 11599496 -139184057 + CT-rich Low_complexity Low_complexity 2 130 0 314 180 0 0 chr11 11599496 11599546 -139184007 - MER66A LTR ERV1 -142 336 287 221 264 0 0 chr11 11600708 11600760 -139182793 + MIR SINE MIR 100 152 -56 321 286 80 9 chr11 11601087 11601199 -139182354 - L2 LINE L2 -39 3233 3114 479 259 62 16 chr11 11601316 11601518 -139182035 + MLT1J LTR MaLR 62 285 -165 287 141 16 0 chr11 11601849 11601913 -139181640 + (TG)n Simple_repeat Simple_repeat 1 65 0 193 361 64 48 chr11 11601922 11602279 -139181274 - L2 LINE L2 -415 2899 2537 592 142 94 9 chr11 11602401 11602538 -139181015 + FLAM_A SINE Alu 4 149 0 791 241 62 18 chr11 11602590 11602814 -139180739 - MIR SINE MIR -21 241 8 272 314 35 12 chr11 11603144 11603230 -139180323 - MIR SINE MIR -162 100 13 222 111 16 32 chr11 11603765 11603828 -139179725 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 2169 124 15 21 chr11 11604037 11604376 -139179177 + MER1B DNA MER1_type 1 337 0 984 267 65 49 chr11 11604627 11605152 -139178401 + L2 LINE L2 2789 3313 0 367 314 59 8 chr11 11606263 11606381 -139177172 - MIR SINE MIR -133 129 6 1519 190 100 67 chr11 11606640 11607061 -139176492 - LTR41 LTR ERVL -2 771 337 493 175 0 105 chr11 11607137 11607251 -139176302 - LTR41 LTR ERVL -594 179 78 489 162 0 0 chr11 11607269 11607343 -139176210 - AluJ/FLAM SINE Alu -237 75 2 269 148 74 19 chr11 11607387 11607441 -139176112 - LTR41 LTR ERVL -716 57 1 1722 290 87 52 chr11 11607575 11607657 -139175896 - L1MEd LINE L1 -4862 1257 1179 1928 164 7 7 chr11 11607657 11607962 -139175591 - AluSx SINE Alu -7 305 1 1722 290 87 52 chr11 11607962 11607980 -139175573 - L1MEd LINE L1 -4940 1179 1163 2154 101 40 0 chr11 11607980 11608277 -139175276 - AluSp SINE Alu -4 309 1 1722 290 87 52 chr11 11608277 11609497 -139174056 - L1MEd LINE L1 -4956 1163 1 242 289 0 93 chr11 11609583 11609680 -139173873 - MIR3 SINE MIR -116 92 5 1138 223 113 11 chr11 11609778 11610052 -139173501 + AluJo SINE Alu 1 302 0 3676 55 9 0 chr11 11610055 11610512 -139173041 + L1PA7 LINE L1 5693 6153 -1 183 156 0 0 chr11 11610835 11610867 -139172686 + CT-rich Low_complexity Low_complexity 2 33 0 546 286 27 32 chr11 11611291 11611476 -139172077 + MIR SINE MIR 49 232 -30 242 226 0 0 chr11 11612342 11612395 -139171158 - HAL1 LINE L1 -1050 1457 1405 1302 210 5 0 chr11 11612424 11612648 -139170905 - MSTB LTR MaLR 0 426 202 1234 168 36 9 chr11 11612687 11612907 -139170646 - MSTB LTR MaLR -198 228 3 1467 245 33 37 chr11 11612916 11613458 -139170095 - HAL1 LINE L1 -1133 1374 835 689 113 0 75 chr11 11613507 11613611 -139169942 + Charlie5 DNA MER1_type 1 94 -2530 2298 96 0 3 chr11 11613611 11613902 -139169651 + AluSg SINE Alu 1 290 -20 689 113 0 75 chr11 11613902 11613930 -139169623 + Charlie5 DNA MER1_type 94 123 -2501 1598 150 105 3 chr11 11613933 11614286 -139169267 + Charlie5 DNA MER1_type 2236 2624 0 616 286 69 36 chr11 11614392 11614668 -139168885 - HAL1 LINE L1 -2222 285 1 211 361 47 30 chr11 11614787 11614956 -139168597 + L2 LINE L2 2686 2857 -457 242 279 3 0 chr11 11615178 11615253 -139168300 - MIR SINE MIR -62 146 74 385 257 7 73 chr11 11615335 11615471 -139168082 + L2 LINE L2 3137 3263 -9 578 275 79 31 chr11 11616513 11616742 -139166811 + MIR SINE MIR 2 241 -21 759 321 125 15 chr11 11618546 11619019 -139164534 - L3 LINE CR1 -7 1570 1046 221 310 76 33 chr11 11620714 11620898 -139162655 + L3 LINE CR1 1037 1228 -349 305 316 76 6 chr11 11621472 11621630 -139161923 - L2 LINE L2 -256 3057 2889 602 307 117 22 chr11 11621676 11622044 -139161509 + L2 LINE L2 2911 3313 0 264 180 20 0 chr11 11622823 11622873 -139160680 - MLT2F LTR ERVL 0 663 613 232 130 65 32 chr11 11622873 11622996 -139160557 + (TCTA)n Simple_repeat Simple_repeat 1 127 0 1361 286 125 8 chr11 11623018 11623546 -139160007 - MLT2F LTR ERVL -44 619 30 302 240 0 13 chr11 11626097 11626172 -139157381 - L1MCa LINE L1 -4347 2079 2006 300 172 0 0 chr11 11626167 11626225 -139157328 - L1MC4 LINE L1 -1347 6695 6638 * 1730 146 44 14 chr11 11626564 11626858 -139156695 - AluJo SINE Alu -1 311 9 211 271 115 33 chr11 11627011 11627133 -139156420 + L2 LINE L2 3171 3302 -11 309 207 0 0 chr11 11628013 11628095 -139155458 + (CA)n Simple_repeat Simple_repeat 2 83 0 470 275 38 0 chr11 11628130 11628261 -139155292 + L2 LINE L2 3137 3272 0 338 324 84 0 chr11 11629364 11629506 -139154047 + MIR SINE MIR 40 193 -69 278 362 13 34 chr11 11629971 11630120 -139153433 + MER5A DNA MER1_type 44 189 0 203 161 0 0 chr11 11630585 11630616 -139152937 + (CA)n Simple_repeat Simple_repeat 2 32 0 222 200 0 0 chr11 11630666 11630701 -139152852 + L2 LINE L2 3222 3256 -16 334 292 174 0 chr11 11631441 11631585 -139151968 - L3 LINE CR1 -177 1400 1232 1450 209 165 8 chr11 11631587 11631956 -139151597 + MLT1C LTR MaLR 4 430 -37 569 320 221 27 chr11 11631980 11632527 -139151026 - L3 LINE CR1 -357 1220 568 407 298 61 0 chr11 11632529 11632643 -139150910 - L2 LINE L2 0 3272 3152 644 254 26 24 chr11 11633470 11633767 -139149786 + MER93b LTR ERV1 3 353 -20 275 343 71 91 chr11 11634334 11634643 -139148910 + L2 LINE L2 2969 3271 -1 424 232 261 0 chr11 11634666 11634808 -139148745 - MIR SINE MIR -10 252 74 23 68 0 0 chr11 11634884 11634928 -139148625 + AT_rich Low_complexity Low_complexity 1 44 0 1040 232 84 66 chr11 11635030 11635457 -139148096 - LTR37B LTR ERV1 -5 463 29 348 201 96 113 chr11 11635801 11636040 -139147513 - L1MC5 LINE L1 -145 7816 7582 314 349 9 0 chr11 11636050 11636159 -139147394 - L2 LINE L2 -16 3297 3188 706 309 51 0 chr11 11636592 11636809 -139146744 - L3 LINE CR1 -745 832 605 279 0 0 0 chr11 11636892 11636923 -139146630 + (TG)n Simple_repeat Simple_repeat 1 31 0 464 398 36 4 chr11 11637154 11637433 -139146120 - L3 LINE CR1 -1001 576 289 356 300 27 47 chr11 11637883 11638033 -139145520 - MIR3 SINE MIR -23 185 39 264 77 0 0 chr11 11638264 11638303 -139145250 + (CATCC)n Simple_repeat Simple_repeat 5 43 0 859 217 10 44 chr11 11638385 11638466 -139145087 + MER58A DNA MER1_type 29 111 -2309 2918 68 6 0 chr11 11638466 11638818 -139144735 + THE1A LTR MaLR 1 354 -1 859 217 10 44 chr11 11638818 11638939 -139144614 + MER58A DNA MER1_type 111 224 0 2652 105 32 32 chr11 11639942 11640275 -139143278 + LTR23 LTR ERV1 1 336 -101 2095 168 111 137 chr11 11640275 11641021 -139142532 + LTR8A LTR ERV1 1 727 0 2652 105 32 32 chr11 11641021 11641124 -139142429 + LTR23 LTR ERV1 335 437 0 376 232 21 32 chr11 11641132 11641227 -139142326 - MIR SINE MIR 0 262 169 203 138 0 0 chr11 11641699 11641728 -139141825 + (CA)n Simple_repeat Simple_repeat 1 29 0 414 347 16 0 chr11 11641781 11641902 -139141651 - L2 LINE L2 -4 3268 3146 1778 84 0 4 chr11 11642013 11642240 -139141313 + AluY SINE Alu 86 311 0 2246 89 0 25 chr11 11642251 11642566 -139140987 + AluSc SINE Alu 1 307 -2 1339 157 62 7 chr11 11642594 11642868 -139140685 - MER33 DNA MER1_type -27 297 9 394 234 194 34 chr11 11642879 11643175 -139140378 - L2 LINE L2 -207 3065 2736 314 291 68 8 chr11 11643898 11644015 -139139538 + L3 LINE CR1 1312 1435 -142 487 223 66 0 chr11 11645325 11645446 -139138107 - MER103 DNA DNA -17 149 21 610 276 168 0 chr11 11646147 11646343 -139137210 + MIR SINE MIR 33 261 -1 1984 159 51 38 chr11 11646346 11646716 -139136837 - THE1C LTR MaLR 0 375 1 259 296 10 20 chr11 11646945 11647043 -139136510 + MIR SINE MIR 156 252 -10 2489 139 28 14 chr11 11647204 11647563 -139135990 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr11 11647567 11647590 -139135963 + AT_rich Low_complexity Low_complexity 1 23 0 632 246 27 44 chr11 11648166 11648349 -139135204 - MER117 DNA MER1_type 0 197 18 2239 170 88 55 chr11 11648554 11649116 -139134437 - LTR49 LTR ERV1 -15 638 2 14558 154 43 70 chr11 11649124 11652388 -139131165 - LTR49-int LTR ERV1 -3 6328 3154 472 139 139 90 chr11 11652397 11652541 -139131012 - LTR49-int LTR ERV1 -2317 4014 3864 3030 163 27 48 chr11 11652582 11653252 -139130301 - LTR49-int LTR ERV1 -3188 3143 1259 573 157 58 16 chr11 11653252 11653373 -139130180 - LTR49 LTR ERV1 -469 126 1 942 427 19 33 chr11 11653525 11653888 -139129665 + MLT1A2 LTR MaLR 1 358 -16 518 220 60 48 chr11 11654030 11654198 -139129355 + MIR SINE MIR 72 241 -21 184 370 113 35 chr11 11654282 11654485 -139129068 - L2 LINE L2 -236 3036 2818 1986 209 21 24 chr11 11654753 11655174 -139128379 + MER66B LTR ERV1 1 420 -66 24 0 0 0 chr11 11655274 11655298 -139128255 + AT_rich Low_complexity Low_complexity 1 24 0 603 118 0 0 chr11 11655384 11655477 -139128076 + AluSg/x SINE Alu 218 310 0 2376 112 0 0 chr11 11656703 11657015 -139126538 - AluSx SINE Alu 0 312 1 207 0 0 0 chr11 11658210 11658233 -139125320 + (T)n Simple_repeat Simple_repeat 1 23 0 307 73 0 0 chr11 11658283 11658324 -139125229 + L1PBa LINE L1 1741 1781 -5082 551 247 174 26 chr11 11658627 11659012 -139124541 - L1MEc LINE L1 -2884 3331 2890 322 211 33 11 chr11 11659124 11659214 -139124339 + MER66A LTR ERV1 387 478 0 2741 198 19 101 chr11 11659258 11660011 -139123542 + LTR8 LTR ERV1 1 691 0 5321 97 3 20 chr11 11660141 11660844 -139122709 + LTR8 LTR ERV1 1 691 0 586 204 167 19 chr11 11661128 11661290 -139122263 - MER5A DNA MER1_type 0 189 4 5187 161 42 8 chr11 11662104 11663239 -139120314 - L1MB2 LINE L1 -2 6169 4994 703 303 25 29 chr11 11663533 11663777 -139119776 + MIR SINE MIR 19 261 -1 319 230 27 0 chr11 11663797 11663871 -139119682 - MLT1E LTR MaLR 0 593 518 6607 197 29 20 chr11 11663871 11665381 -139118172 + L1M4 LINE L1 3841 5362 -784 485 76 30 0 chr11 11665377 11665443 -139118110 + L1MB8 LINE L1 6070 6137 -41 * 189 0 0 0 chr11 11665464 11665485 -139118068 + (CA)n Simple_repeat Simple_repeat 2 22 0 775 243 123 22 chr11 11665485 11665880 -139117673 - MLT1E LTR MaLR -64 529 1 408 256 48 24 chr11 11666110 11666235 -139117318 - MIR SINE MIR -130 132 5 184 380 14 0 chr11 11666339 11666410 -139117143 - L2 LINE L2 -18 3254 3183 824 251 104 25 chr11 11666453 11666837 -139116716 - L1MEc LINE L1 -3655 2560 2168 1973 142 130 24 chr11 11666837 11667176 -139116377 + THE1C LTR MaLR 1 375 0 824 251 104 25 chr11 11667176 11667265 -139116288 - L1MEc LINE L1 -4047 2168 2087 1729 192 29 35 chr11 11667510 11667854 -139115699 + MER2 DNA MER2_type 2 343 -1 351 235 152 23 chr11 11667860 11668077 -139115476 - L1MEc LINE L1 -5112 1093 849 2543 54 0 0 chr11 11668080 11668378 -139115175 - AluY SINE Alu -13 298 1 322 109 0 0 chr11 11668404 11668450 -139115103 - L1MA9 LINE L1 -38 6274 6229 1848 133 20 51 chr11 11668450 11668804 -139114749 + THE1B LTR MaLR 1 343 -21 3139 223 51 35 chr11 11669738 11670856 -139112697 - L1ME1 LINE L1 -86 6080 4930 597 299 93 29 chr11 11670871 11671397 -139112156 + L1M4 LINE L1 4100 4659 -1487 311 308 0 0 chr11 11671598 11671689 -139111864 - L2 LINE L2 -631 2683 2593 608 180 29 22 chr11 11671812 11671951 -139111602 - LTR41 LTR ERVL -633 140 1 2768 144 36 0 chr11 11672189 11672606 -139110947 + MSTB1 LTR MaLR 1 432 0 1047 318 75 20 chr11 11672634 11673278 -139110275 - L2 LINE L2 -40 3232 1835 327 273 23 53 chr11 11673365 11673497 -139110056 - MER103 DNA DNA -1 165 38 210 231 0 0 chr11 11676187 11676252 -139107301 + (TTTA)n Simple_repeat Simple_repeat 1 65 0 339 339 48 32 chr11 11676287 11676411 -139107142 - L2 LINE L2 0 3272 3147 194 167 83 21 chr11 11679297 11679345 -139104208 + MER5B DNA MER1_type 2 52 -126 1303 300 103 25 chr11 11680392 11681186 -139102367 + HAL1b LINE L1 56 911 -437 190 222 0 22 chr11 11681432 11681477 -139102076 + MIR SINE MIR 200 243 -19 1834 141 4 7 chr11 11681479 11681749 -139101804 - AluSx SINE Alu -43 269 1 221 261 6 78 chr11 11682081 11682261 -139101292 + T-rich Low_complexity Low_complexity 2 168 0 769 83 0 0 chr11 11682947 11683043 -139100510 + L1PA3 LINE L1 2 97 -6049 * 32752 40 0 6 chr11 11683042 11684288 -139099265 + L1PA3 LINE L1 600 1851 -4295 8103 27 0 4 chr11 11684288 11685643 -139097910 + L1PA3 LINE L1 4806 6152 -3 32752 40 0 6 chr11 11685643 11688345 -139095208 + L1PA3 LINE L1 1851 4526 -1620 5757 183 50 16 chr11 11688445 11690880 -139092673 - L1PBb LINE L1 -3025 3178 658 308 300 106 33 chr11 11691018 11691198 -139092355 + MIR SINE MIR 68 260 -2 268 256 11 44 chr11 11691419 11691509 -139092044 + MER102b DNA MER1_type 232 318 -23 1101 286 66 40 chr11 11691588 11692502 -139091051 + L1MC4a LINE L1 747 1715 -4595 4879 264 81 46 chr11 11692782 11693379 -139090174 + L1MC4a LINE L1 4499 5074 -2717 2417 52 35 0 chr11 11693379 11693665 -139089888 - AluY SINE Alu -14 297 2 4879 264 81 46 chr11 11693665 11695448 -139088105 + L1MC4a LINE L1 5074 6980 -811 203 88 29 0 chr11 11695448 11695482 -139088071 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 4879 264 81 46 chr11 11695482 11695711 -139087842 + L1MC4a LINE L1 6980 7200 -591 1119 240 78 35 chr11 11695838 11696322 -139087231 + L1MEd LINE L1 2231 2735 -3394 192 200 0 0 chr11 11697267 11697307 -139086246 + (TG)n Simple_repeat Simple_repeat 2 41 0 385 236 236 56 chr11 11697972 11698167 -139085386 - L2 LINE L2 -337 2977 2748 1510 150 4 4 chr11 11698293 11698519 -139085034 - AluSx SINE Alu -86 226 1 377 325 8 16 chr11 11698519 11698645 -139084908 - L2 LINE L2 -249 3023 2899 378 283 33 25 chr11 11700039 11700159 -139083394 + L2 LINE L2 3193 3313 0 1048 239 147 21 chr11 11700204 11700585 -139082968 - LTR33 LTR ERVL -3 518 90 970 177 111 5 chr11 11700720 11700918 -139082635 + MER20 DNA MER1_type 1 219 0 304 276 69 26 chr11 11701543 11701659 -139081894 - MIR SINE MIR -77 185 65 196 222 44 0 chr11 11701904 11701949 -139081604 - L2 LINE L2 -3 3310 3264 540 232 139 0 chr11 11702051 11702202 -139081351 - MIR SINE MIR -12 250 79 1476 167 63 20 chr11 11702216 11702516 -139081037 + L1MB3 LINE L1 5828 6140 -43 2260 80 14 0 chr11 11702519 11702808 -139080745 + AluY SINE Alu 1 293 -18 550 30 0 0 chr11 11702880 11702946 -139080607 - L1PA4 LINE L1 -3 6152 6087 288 258 45 22 chr11 11703007 11703096 -139080457 + L2 LINE L2 3180 3270 -2 287 91 0 0 chr11 11703136 11703180 -139080373 + L1MB4 LINE L1 6136 6179 -1 1992 203 17 17 chr11 11703278 11703692 -139079861 - MLT2D LTR ERVL 0 414 1 2160 110 3 13 chr11 11704278 11704578 -139078975 + AluSx SINE Alu 1 297 -15 284 326 160 22 chr11 11705744 11705925 -139077628 - MIR SINE MIR -23 239 34 314 304 36 9 chr11 11706847 11706959 -139076594 + MIR SINE MIR 26 140 -122 764 187 122 75 chr11 11707283 11707375 -139076178 - MER58A DNA MER1_type -2196 224 138 2267 151 14 38 chr11 11707375 11707745 -139075808 - MLT1A1 LTR MaLR -4 361 1 764 187 122 75 chr11 11707745 11707866 -139075687 - MER58A DNA MER1_type -2282 138 1 381 173 12 12 chr11 11708007 11708088 -139075465 - L1ME3 LINE L1 -215 5947 5867 586 275 20 64 chr11 11708110 11708361 -139075192 - L1ME3 LINE L1 -403 5767 5528 1212 209 63 54 chr11 11708367 11708867 -139074686 - MER34B LTR ERV1 -6 559 5 759 265 34 32 chr11 11708877 11709344 -139074209 - L1ME3 LINE L1 -634 5528 5056 1427 240 21 24 chr11 11709658 11709996 -139073557 - LTR27 LTR ERV1 -1 635 299 298 203 16 0 chr11 11709970 11710034 -139073519 - LTR1 LTR ERV1 -600 185 121 * 272 105 0 0 chr11 11710047 11710085 -139073468 - MER61B LTR ERV1 -286 139 102 * 893 188 0 18 chr11 11710071 11710241 -139073312 - LTR28 LTR ERV1 -853 167 1 2028 163 98 21 chr11 11710241 11710659 -139072894 + MLT1D LTR MaLR 56 505 0 213 94 0 0 chr11 11710992 11711024 -139072529 + (CA)n Simple_repeat Simple_repeat 1 32 0 32 0 0 0 chr11 11711760 11711792 -139071761 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr11 11712132 11712160 -139071393 + AT_rich Low_complexity Low_complexity 1 28 0 860 281 39 17 chr11 11714019 11714378 -139069175 - LTR16A LTR ERVL 0 450 84 1609 188 32 0 chr11 11714985 11715267 -139068286 + AluJb SINE Alu 1 291 -21 401 287 8 25 chr11 11715291 11715413 -139068140 + MIR3 SINE MIR 4 123 -85 954 222 236 33 chr11 11716230 11716595 -139066958 + MLT1E LTR MaLR 1 439 -154 392 352 57 0 chr11 11716628 11716787 -139066766 - MIR SINE MIR -48 214 47 810 249 46 10 chr11 11717103 11717300 -139066253 - MIR SINE MIR -30 232 29 2415 165 17 40 chr11 11717946 11718351 -139065202 + MSTD LTR MaLR 1 396 0 11052 171 11 9 chr11 11718932 11721603 -139061950 + L1PB3 LINE L1 3146 5823 -331 2091 125 0 0 chr11 11721603 11721907 -139061646 + AluSc SINE Alu 1 304 0 11052 171 11 9 chr11 11721907 11722238 -139061315 + L1PB3 LINE L1 5823 6152 -2 812 121 14 57 chr11 11723515 11723655 -139059898 + L1MA9 LINE L1 6179 6312 0 3898 132 32 10 chr11 11724541 11725126 -139058427 - MER7C DNA MER2_type 0 602 5 210 71 0 0 chr11 11725602 11725630 -139057923 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 699 204 25 46 chr11 11725729 11725925 -139057628 + LTR33 LTR ERVL 330 521 0 780 189 18 92 chr11 11726264 11726492 -139057061 + L1MD3 LINE L1 7777 7987 -8 711 292 89 57 chr11 11726802 11727241 -139056312 + MLT1L LTR MaLR 2 454 -161 282 73 0 0 chr11 11728282 11728323 -139055230 + (CAT)n Simple_repeat Simple_repeat 1 41 0 201 294 0 0 chr11 11728377 11728428 -139055125 - MIR SINE MIR -32 230 180 193 291 164 9 chr11 11728577 11728687 -139054866 - MIR SINE MIR -75 187 61 609 253 123 113 chr11 11729419 11729948 -139053605 - LTR67 LTR ERVL 0 557 24 739 295 32 14 chr11 11729987 11730272 -139053281 - L1M4 LINE L1 -2169 3977 3688 192 227 45 0 chr11 11730478 11730522 -139053031 - L2 LINE L2 -6 3266 3221 219 69 0 0 chr11 11730769 11730798 -139052755 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 230 187 213 0 chr11 11731053 11731128 -139052425 + MIR SINE MIR 71 161 -101 274 279 0 0 chr11 11731914 11731982 -139051571 + MIR SINE MIR 68 135 -73 323 302 35 0 chr11 11732637 11732753 -139050800 - MIR3 SINE MIR -46 162 43 438 245 131 76 chr11 11733494 11733731 -139049822 - MIR SINE MIR -1 261 12 538 327 38 44 chr11 11733790 11734313 -139049240 - L2 LINE L2 -411 2903 2384 472 255 167 14 chr11 11734965 11735296 -139048257 + LTR16A LTR ERVL 23 450 0 361 269 67 15 chr11 11735297 11735431 -139048122 + MLT2F LTR ERVL 1 141 -522 1131 171 136 17 chr11 11735490 11735777 -139047776 + MLT2F LTR ERVL 303 623 -40 1402 220 83 40 chr11 11737084 11737545 -139046008 + MLT1D LTR MaLR 21 387 -3 216 329 79 13 chr11 11737792 11737944 -139045609 + MIR SINE MIR 80 241 -21 878 185 21 85 chr11 11738223 11738412 -139045141 - MER45A DNA AcHobo 0 178 2 316 266 18 18 chr11 11738764 11738877 -139044676 - MIR SINE MIR -56 206 94 316 269 74 34 chr11 11738971 11739120 -139044433 - MIR SINE MIR -48 214 60 348 286 202 0 chr11 11739444 11739622 -139043931 + MIR SINE MIR 40 253 -9 316 350 16 0 chr11 11739921 11740044 -139043509 + MIR3 SINE MIR 32 156 -52 2253 115 0 3 chr11 11740047 11740343 -139043210 - AluSg SINE Alu -15 295 1 7642 30 2 0 chr11 11740519 11741998 -139041555 + L1PA4 LINE L1 4672 6152 -3 180 143 0 0 chr11 11742483 11742518 -139041035 + L2 LINE L2 3270 3304 -9 14662 191 26 7 chr11 11742612 11743052 -139040501 - L1P LINE L1 -1291 4855 4425 2055 142 0 16 chr11 11743052 11743369 -139040184 - AluSx SINE Alu 0 312 1 14662 191 26 7 chr11 11743369 11745932 -139037621 - L1P LINE L1 -1721 4425 1795 642 226 14 14 chr11 11745932 11746078 -139037475 - MER58 DNA MER1_type -2274 146 1 1141 148 181 68 chr11 11747012 11747337 -139036216 + THE1B LTR MaLR 1 362 -2 558 232 85 12 chr11 11747718 11747882 -139035671 + MER5B DNA MER1_type 3 178 0 2879 257 64 31 chr11 11749348 11750708 -139032845 - L1ME3A LINE L1 0 6170 4755 1166 209 93 11 chr11 11750731 11751086 -139032467 - L1ME3A LINE L1 -1505 4641 4258 1493 198 112 34 chr11 11751087 11751470 -139032083 - MLT1D LTR MaLR 0 505 93 1600 171 21 21 chr11 11751470 11751756 -139031797 + LTR32 LTR ERVL 15 300 -171 226 259 120 28 chr11 11751760 11751868 -139031685 - L1M4 LINE L1 -1228 4918 4801 505 229 97 21 chr11 11751992 11752136 -139031417 + LTR32 LTR ERVL 317 471 0 261 212 26 142 chr11 11752136 11752246 -139031307 - MLT1D LTR MaLR -408 97 1 228 265 44 0 chr11 11752247 11752315 -139031238 - L1ME3A LINE L1 -1890 4256 4186 266 310 69 48 chr11 11752323 11752468 -139031085 - MIR SINE MIR -113 149 2 332 276 29 19 chr11 11752670 11752775 -139030778 + MIR SINE MIR 40 145 -63 299 236 154 8 chr11 11753069 11753192 -139030361 - L2 LINE L2 -214 3058 2918 241 280 20 30 chr11 11753865 11753965 -139029588 + L3 LINE CR1 1277 1375 -202 314 164 66 0 chr11 11755170 11755231 -139028322 - L2 LINE L2 -12 3301 3237 * 463 248 16 8 chr11 11755219 11755344 -139028209 + L3 LINE CR1 1379 1504 -73 185 305 12 49 chr11 11755535 11755617 -139027936 - MIR SINE MIR -93 115 37 710 228 175 16 chr11 11755768 11756014 -139027539 + MER45C DNA AcHobo 1 285 -668 484 303 88 44 chr11 11756163 11756437 -139027116 + MER45C DNA AcHobo 487 772 -181 1714 162 62 3 chr11 11756568 11756876 -139026677 + MER45B DNA AcHobo 715 1040 0 432 217 17 35 chr11 11858016 11858131 -138925422 - L1ME2 LINE L1 0 6164 6052 225 281 0 0 chr11 11858629 11858693 -138924860 - MLT1D LTR MaLR -438 67 4 2449 83 0 22 chr11 11858841 11859153 -138924400 + AluSg SINE Alu 1 305 -5 352 315 94 10 chr11 11859267 11859470 -138924083 + MIR SINE MIR 41 260 -2 521 266 189 0 chr11 11859787 11859956 -138923597 + MIR SINE MIR 6 206 -56 1307 183 0 5 chr11 11863310 11863534 -138920019 + MLT1A1 LTR MaLR 143 365 0 227 233 0 0 chr11 11863534 11863577 -138919976 + Charlie8 DNA MER1_type 218 260 -2157 860 231 58 24 chr11 11863646 11864091 -138919462 - MLT1F1 LTR MaLR 0 567 1 230 276 0 26 chr11 11864094 11864170 -138919383 + MIR SINE MIR 183 256 -6 573 286 87 12 chr11 11864177 11864418 -138919135 - MIR SINE MIR -2 260 2 1209 196 84 42 chr11 11864673 11865010 -138918543 - MLT1A1 LTR MaLR -12 353 1 202 304 29 53 chr11 11865027 11865198 -138918355 + L2 LINE L2 2814 2980 -292 514 124 21 21 chr11 11866068 11866165 -138917388 + MER103 DNA DNA 25 121 -45 465 306 23 23 chr11 11866741 11866914 -138916639 - MIR SINE MIR -31 231 59 219 69 0 0 chr11 11866931 11866960 -138916593 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 3537 59 9 0 chr11 11867457 11867900 -138915653 - L1PA8 LINE L1 -19 6153 5707 231 222 100 33 chr11 11868077 11868167 -138915386 + L2 LINE L2 3168 3263 -9 385 328 15 23 chr11 11870033 11870164 -138913389 + MIR3 SINE MIR 3 132 -76 210 341 24 0 chr11 11870367 11870449 -138913104 - L2 LINE L2 -6 3307 3224 595 238 72 0 chr11 11870609 11870802 -138912751 - L1ME3A LINE L1 0 6170 5964 1558 241 59 16 chr11 11871782 11872276 -138911277 + HAL1 LINE L1 1420 1934 -573 1120 236 79 57 chr11 11872383 11872888 -138910665 + LTR33A LTR ERVL 2 517 -6 405 273 102 44 chr11 11872893 11873168 -138910385 + HAL1 LINE L1 2079 2369 -138 557 268 162 0 chr11 11873273 11873452 -138910101 + MIR SINE MIR 34 241 -21 374 264 64 9 chr11 11873779 11873889 -138909664 - MIR SINE MIR -128 134 19 266 338 0 2 chr11 11874367 11874470 -138909083 - L2 LINE L2 -274 2998 2897 251 368 14 14 chr11 11875458 11875602 -138907951 + MIR SINE MIR 10 153 -109 722 257 31 62 chr11 11875616 11875842 -138907711 + MIR SINE MIR 40 258 -4 183 233 0 0 chr11 11875887 11875930 -138907623 + L2 LINE L2 3271 3313 0 688 217 32 6 chr11 11876080 11876237 -138907316 - MER63 DNA MER1_type -272 788 628 184 203 106 114 chr11 11876914 11877037 -138906516 - MER5B DNA MER1_type -56 122 1 552 196 101 34 chr11 11877688 11877836 -138905717 + MER5A DNA MER1_type 13 170 -19 609 306 107 10 chr11 11877862 11878068 -138905485 + MIR SINE MIR 5 230 -32 864 265 60 36 chr11 11878272 11878525 -138905028 - LTR16C LTR ERVL 0 491 227 2339 177 64 11 chr11 11878525 11878965 -138904588 - MLT1C LTR MaLR 0 467 5 864 265 60 36 chr11 11878965 11879047 -138904506 - LTR16C LTR ERVL -264 227 148 2680 127 16 45 chr11 11879054 11879112 -138904441 + MSTB1 LTR MaLR 1 59 -373 2564 61 0 0 chr11 11879112 11879408 -138904145 + AluY SINE Alu 1 296 -15 2680 127 16 45 chr11 11879408 11879790 -138903763 + MSTB1 LTR MaLR 59 428 -4 1421 153 39 49 chr11 11879862 11880105 -138903448 - MLT1A1 LTR MaLR 0 365 124 903 224 124 59 chr11 11880105 11880444 -138903109 + MLT1A1 LTR MaLR 1 361 -4 1421 153 39 49 chr11 11880444 11880508 -138903045 - MLT1A1 LTR MaLR -241 124 61 204 245 0 0 chr11 11880754 11880803 -138902750 + A-rich Low_complexity Low_complexity 1 49 0 196 345 12 12 chr11 11882635 11882719 -138900834 - MIR SINE MIR -133 129 46 981 328 121 31 chr11 11883110 11883753 -138899800 - L3 LINE CR1 -22 1555 855 795 263 96 82 chr11 11884019 11884622 -138898931 + L2 LINE L2 2536 3152 -161 486 0 0 0 chr11 11884622 11884676 -138898877 + (CA)n Simple_repeat Simple_repeat 2 55 0 795 263 96 82 chr11 11884676 11884841 -138898712 + L2 LINE L2 3152 3313 0 212 210 0 16 chr11 11885034 11885096 -138898457 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 29 0 0 0 chr11 11885255 11885284 -138898269 + AT_rich Low_complexity Low_complexity 1 29 0 1996 131 3 3 chr11 11885831 11886136 -138897417 + AluSx SINE Alu 1 305 -7 487 291 35 8 chr11 11887609 11887766 -138895787 + MIR SINE MIR 32 194 -65 583 189 11 105 chr11 11887788 11887978 -138895575 + MER20 DNA MER1_type 47 218 -1 267 214 0 0 chr11 11890175 11890245 -138893308 + (CCA)n Simple_repeat Simple_repeat 3 72 0 200 328 0 0 chr11 11891062 11891123 -138892430 + L2 LINE L2 3210 3270 -2 239 408 8 0 chr11 11891414 11891539 -138892014 - MIR SINE MIR -63 145 20 722 285 91 30 chr11 11892375 11892673 -138890880 - L2 LINE L2 -12 3301 2986 529 200 44 37 chr11 11893560 11893695 -138889858 + L2 LINE L2 3173 3308 -5 377 338 36 0 chr11 11894172 11894311 -138889242 + MIR3 SINE MIR 35 178 -30 257 172 299 11 chr11 11894415 11894502 -138889051 + MER81 DNA DNA 1 112 -2 245 320 90 0 chr11 11894516 11894616 -138888937 + L2 LINE L2 3160 3268 -4 233 348 144 0 chr11 11896238 11896356 -138887197 + L2 LINE L2 3138 3272 0 1556 94 29 1 chr11 11896800 11897156 -138886397 - L1P4 LINE L1 -685 5481 5114 420 240 13 87 chr11 11897265 11897415 -138886138 + MIR3 SINE MIR 32 170 -38 286 285 46 31 chr11 11897436 11897566 -138885987 + MLT1J2 LTR MaLR 47 178 -231 2230 167 91 5 chr11 11897601 11898021 -138885532 + MLT1C LTR MaLR 6 461 -6 1406 232 16 27 chr11 11898127 11898493 -138885060 + LTR37B LTR ERV1 6 367 -101 418 151 161 0 chr11 11898777 11898870 -138884683 + MLT1C LTR MaLR 152 259 -208 227 382 34 0 chr11 11898902 11898991 -138884562 - L3 LINE CR1 -3 1574 1483 245 315 74 19 chr11 11899099 11899207 -138884346 - L3 LINE CR1 -321 1256 1143 686 191 85 163 chr11 11899213 11899496 -138884057 - MIR SINE MIR 0 262 2 277 269 0 0 chr11 11899643 11899695 -138883858 + MER91 DNA MER1_type 87 138 -2 500 279 125 5 chr11 11900550 11900758 -138882795 + L1ME3 LINE L1 5927 6159 -3 2145 112 0 7 chr11 11900928 11901231 -138882322 - AluSx SINE Alu -11 301 1 829 253 51 39 chr11 11901397 11901654 -138881899 - MIR SINE MIR -2 260 1 1046 212 5 0 chr11 11901842 11902067 -138881486 + L1ME3A LINE L1 5356 5589 -567 1322 209 66 50 chr11 11902068 11902432 -138881121 - MLT1A2 LTR MaLR -4 370 1 2152 217 33 20 chr11 11902432 11902990 -138880563 - MLT1-int LTR MaLR 0 1735 679 572 242 43 30 chr11 11903054 11903282 -138880271 - MLT1-int LTR MaLR -489 882 561 1236 192 29 57 chr11 11903282 11903563 -138879990 + MLT1A2 LTR MaLR 98 370 -4 1276 250 7 0 chr11 11903567 11903859 -138879694 + L1ME3A LINE L1 5582 5875 -295 * 1846 89 30 11 chr11 11903856 11904209 -138879344 - L1PB2 LINE L1 -619 5532 5169 4675 76 2 22 chr11 11904210 11904852 -138878701 + L1PB2 LINE L1 5521 6149 -2 23 0 0 0 chr11 11904852 11904875 -138878678 + AT_rich Low_complexity Low_complexity 1 23 0 238 299 13 0 chr11 11904875 11904952 -138878601 + L1ME3A LINE L1 5877 5954 -210 332 242 33 0 chr11 11904964 11905055 -138878498 + L1ME3A LINE L1 6077 6170 0 2386 73 0 0 chr11 11905368 11905669 -138877884 - AluY SINE Alu -10 301 1 956 215 5 20 chr11 11908682 11908882 -138874671 - MIR SINE MIR -64 198 2 207 173 0 0 chr11 11910350 11910402 -138873151 + (TG)n Simple_repeat Simple_repeat 1 52 0 340 307 102 15 chr11 11910896 11910984 -138872569 - MIR3 SINE MIR -6 202 96 1945 118 0 50 chr11 11910984 11911307 -138872246 + AluSx SINE Alu 1 307 -5 340 307 102 15 chr11 11911307 11911355 -138872198 - MIR3 SINE MIR -112 96 54 705 230 18 6 chr11 11911375 11911540 -138872013 + MER5A DNA MER1_type 5 171 -18 412 153 10 58 chr11 11912633 11912730 -138870823 - MSTB2 LTR MaLR 0 457 279 2018 181 41 58 chr11 11913308 11913822 -138869731 + MLT1D LTR MaLR 1 505 0 730 265 73 32 chr11 11914439 11914658 -138868895 + MIR SINE MIR 35 262 0 331 304 82 15 chr11 11914694 11914829 -138868724 - MIR SINE MIR -6 256 113 227 338 136 43 chr11 11914860 11915162 -138868391 + L2 LINE L2 2943 3272 0 241 174 0 101 chr11 11915359 11915428 -138868125 - MIR SINE MIR -169 93 32 392 290 131 15 chr11 11917433 11917589 -138865964 - MIR SINE MIR -61 147 3 588 234 68 78 chr11 11918780 11918972 -138864581 - MIR SINE MIR -56 206 17 2280 79 0 3 chr11 11919674 11919977 -138863576 + AluY SINE Alu 1 302 -9 230 296 56 24 chr11 11920185 11920310 -138863243 + L2 LINE L2 3143 3271 -1 287 328 156 46 chr11 11921460 11921762 -138861791 - L2 LINE L2 -25 3247 2913 2022 118 0 3 chr11 11922024 11922320 -138861233 - AluSg SINE Alu -15 295 1 402 316 128 5 chr11 11922647 11922843 -138860710 - MIR SINE MIR -10 252 33 234 208 0 0 chr11 11924113 11924161 -138859392 - MIR SINE MIR -118 144 97 798 352 54 31 chr11 11924798 11925375 -138858178 + L2 LINE L2 2247 2836 -478 241 320 67 52 chr11 11928235 11928429 -138855124 - MIR SINE MIR -18 244 48 1473 256 60 14 chr11 11928801 11929247 -138854306 + MLT1C LTR MaLR 1 467 0 873 278 40 86 chr11 11929582 11930469 -138853084 + L1MEd LINE L1 660 1545 -4765 311 253 11 11 chr11 11932243 11932338 -138851215 - LTR67 LTR ERVL -5 552 458 5460 76 10 0 chr11 11932796 11933505 -138850048 + L1PA8A LINE L1 5416 6131 0 3541 224 73 60 chr11 11933552 11934834 -138848719 - L1MC5 LINE L1 -60 7901 6589 186 43 0 0 chr11 11934834 11934857 -138848696 + (TTA)n Simple_repeat Simple_repeat 3 25 0 3541 224 73 60 chr11 11934857 11935175 -138848378 - L1MC5 LINE L1 -1372 6589 6277 25 75 0 0 chr11 11935232 11935285 -138848268 + AT_rich Low_complexity Low_complexity 1 53 0 1803 272 82 25 chr11 11935443 11936141 -138847412 - L1MC5 LINE L1 -747 5399 5154 189 0 0 0 chr11 11936141 11936162 -138847391 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1803 272 82 25 chr11 11936162 11936604 -138846949 - L1MC5 LINE L1 -992 5154 4738 277 316 158 5 chr11 11936791 11936981 -138846572 + L3 LINE CR1 1244 1462 -115 993 260 13 13 chr11 11937030 11937265 -138846288 - MIR SINE MIR -2 260 26 195 292 0 0 chr11 11937295 11937343 -138846210 + L3 LINE CR1 433 480 -1097 192 273 0 0 chr11 11937414 11937458 -138846095 - L2 LINE L2 -90 3182 3139 320 294 65 92 chr11 11937695 11938096 -138845457 + L1M4 LINE L1 3126 3515 -2631 224 315 11 11 chr11 11938209 11938298 -138845255 - L2 LINE L2 -188 3084 2996 275 336 202 0 chr11 11938520 11938728 -138844825 - MIR SINE MIR -12 250 1 351 44 0 0 chr11 11939654 11939699 -138843854 + (TG)n Simple_repeat Simple_repeat 2 46 0 606 163 31 148 chr11 11940583 11940779 -138842774 + MER5B DNA MER1_type 6 178 0 358 232 0 80 chr11 11940789 11940901 -138842652 - MER5A DNA MER1_type -1 188 86 200 310 85 85 chr11 11942375 11942633 -138840920 + L2 LINE L2 3006 3263 -9 231 297 249 12 chr11 11944074 11944239 -138839314 + L2 LINE L2 3068 3271 -1 210 333 0 0 chr11 11944617 11944689 -138838864 - MIR SINE MIR -133 129 58 307 336 32 8 chr11 11945624 11945749 -138837804 - MIR SINE MIR -28 234 107 1025 181 0 0 chr11 11945771 11945937 -138837616 + FRAM SINE Alu 1 166 0 2184 134 3 0 chr11 11946708 11947013 -138836540 + AluSx SINE Alu 1 306 -6 577 341 182 0 chr11 11947099 11947579 -138835974 - L2 LINE L2 -225 3088 2508 723 208 104 20 chr11 11948154 11948356 -138835197 + MIR SINE MIR 7 225 -37 618 290 86 14 chr11 11948517 11948738 -138834815 + MIR SINE MIR 20 256 -6 2025 117 7 23 chr11 11948974 11949273 -138834280 + AluSq SINE Alu 1 294 -19 318 229 43 43 chr11 11951235 11951327 -138832226 + MIR SINE MIR 112 232 -30 182 283 117 0 chr11 11951327 11951387 -138832166 + MIR SINE MIR 178 244 -18 290 306 54 108 chr11 11952327 11952808 -138830745 + L2 LINE L2 2818 3272 0 213 132 0 0 chr11 11953301 11953339 -138830214 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 193 328 16 0 chr11 11953850 11953914 -138829639 + MIR SINE MIR 79 143 -65 27 0 0 0 chr11 11953926 11953953 -138829600 + AT_rich Low_complexity Low_complexity 1 27 0 2208 96 3 0 chr11 11954105 11954387 -138829166 - AluSp SINE Alu -10 303 21 311 229 209 9 chr11 11954515 11954620 -138828933 - L2 LINE L2 0 3272 3147 537 272 69 26 chr11 11954829 11955061 -138828492 + LTR16C LTR ERVL 2 243 -248 193 275 0 72 chr11 11955067 11955136 -138828417 + MIR SINE MIR 117 180 -82 335 263 21 81 chr11 11955946 11956132 -138827421 - MIR SINE MIR 0 262 88 357 353 43 0 chr11 11957115 11957231 -138826322 + L2 LINE L2 3134 3254 -18 247 298 48 0 chr11 11958226 11958310 -138825243 - L3 LINE CR1 -293 1284 1197 492 294 206 0 chr11 11958315 11958529 -138825024 - MIR SINE MIR 0 262 5 547 347 63 0 chr11 11958622 11958861 -138824692 - L3 LINE CR1 -498 1079 826 530 300 48 36 chr11 11958994 11959226 -138824327 + MIR SINE MIR 3 239 -23 675 212 14 20 chr11 11959329 11959475 -138824078 - MER45A DNA AcHobo 0 178 34 1535 234 52 41 chr11 11959508 11959992 -138823561 - MLT1D LTR MaLR -13 492 4 484 200 17 35 chr11 11960897 11961012 -138822541 - L1ME2 LINE L1 0 6164 6052 436 125 0 0 chr11 11961510 11961574 -138821979 - MLT1D LTR MaLR -438 67 4 266 292 0 28 chr11 11961981 11962053 -138821500 + L2 LINE L2 3203 3272 0 741 252 80 25 chr11 11962706 11962944 -138820609 + MIR SINE MIR 2 252 -10 314 247 71 11 chr11 11963626 11963727 -138819826 + MIR SINE MIR 44 150 -73 1017 259 64 0 chr11 11964133 11964399 -138819154 + L2 LINE L2 2524 2806 -508 789 178 25 18 chr11 11964412 11964575 -138818978 - MER5B DNA MER1_type -12 166 3 497 206 22 37 chr11 11964575 11964708 -138818845 + L2 LINE L2 2801 2931 -383 183 355 16 16 chr11 11964860 11964922 -138818631 - L3 LINE CR1 -1304 273 212 330 153 0 0 chr11 11965436 11965495 -138818058 + CT-rich Low_complexity Low_complexity 4 62 0 1138 250 106 22 chr11 11966532 11966936 -138816617 - LTR16C LTR ERVL -1 490 53 289 234 26 13 chr11 11967031 11967108 -138816445 + L2 LINE L2 3203 3280 -33 226 322 66 66 chr11 11967123 11967306 -138816247 + L2 LINE L2 3004 3186 -86 554 252 155 7 chr11 11968079 11968234 -138815319 + MER5A DNA MER1_type 6 183 -6 356 284 155 21 chr11 11968318 11968557 -138814996 + L2 LINE L2 2843 3113 -159 401 270 97 65 chr11 11969234 11969419 -138814134 - MIR SINE MIR -21 241 51 2385 94 3 3 chr11 11969525 11969832 -138813721 + AluSp SINE Alu 1 307 -6 242 224 0 92 chr11 11970171 11970247 -138813306 + MIR SINE MIR 57 125 -83 1626 165 109 6 chr11 11970385 11970706 -138812847 - MER21B LTR ERV1 -107 756 403 302 193 18 0 chr11 11970718 11970775 -138812778 - MER21B LTR ERV1 -805 58 1 1330 117 5 15 chr11 11972431 11972636 -138810917 + L1PB1 LINE L1 5948 6150 -1 24 32 0 0 chr11 11972638 11972669 -138810884 + AT_rich Low_complexity Low_complexity 1 31 0 356 298 232 15 chr11 11973185 11973321 -138810232 + MIR SINE MIR 14 119 -143 1799 209 96 17 chr11 11973321 11973789 -138809764 - MLT1D LTR MaLR 0 505 1 356 298 232 15 chr11 11973789 11973850 -138809703 + MIR SINE MIR 119 254 -8 288 351 27 0 chr11 11974330 11974441 -138809112 - MIR SINE MIR -3 259 146 360 267 103 0 chr11 11974784 11974900 -138808653 + MIR SINE MIR 17 144 -64 889 220 42 35 chr11 11974910 11975169 -138808384 - MIR SINE MIR 0 262 2 1311 196 57 68 chr11 11975183 11975417 -138808136 + MSTD LTR MaLR 1 236 -160 261 0 0 0 chr11 11975417 11975446 -138808107 + (TC)n Simple_repeat Simple_repeat 2 30 0 270 0 0 0 chr11 11975447 11975477 -138808076 + (CA)n Simple_repeat Simple_repeat 2 31 0 1311 196 57 68 chr11 11975477 11975576 -138807977 + MSTD LTR MaLR 235 332 -64 333 373 19 28 chr11 11975676 11975888 -138807665 - L2 LINE L2 -198 3074 2865 632 324 105 30 chr11 11976947 11977308 -138806245 - L3 LINE CR1 -25 1552 1165 180 262 24 0 chr11 11979941 11979983 -138803570 - MIR SINE MIR 0 262 220 2080 117 13 10 chr11 11981849 11982148 -138801405 + AluSx SINE Alu 1 300 -12 445 265 29 18 chr11 11983953 11984123 -138799430 + LTR33 LTR ERVL 341 512 -9 1683 159 11 8 chr11 11984788 11985052 -138798501 + AluJo SINE Alu 1 265 -47 250 226 16 0 chr11 11985270 11985332 -138798221 - MER81 DNA DNA 0 114 52 895 253 60 65 chr11 11985423 11985869 -138797684 - LTR16A1 LTR ERVL -13 444 1 1301 246 72 3 chr11 11986604 11986938 -138796615 + LTR16C LTR ERVL 122 478 -13 1454 293 110 27 chr11 11987612 11988526 -138795027 + L2 LINE L2 2278 3282 -31 2240 213 72 40 chr11 11988526 11989127 -138794426 - MLT1E3 LTR MaLR 0 624 5 1454 293 110 27 chr11 11989127 11989162 -138794391 + L2 LINE L2 3282 3313 0 283 345 55 0 chr11 11989313 11989423 -138794130 + MIR SINE MIR 30 145 -63 189 121 0 0 chr11 11989490 11989523 -138794030 + (TCCA)n Simple_repeat Simple_repeat 3 35 0 610 258 67 53 chr11 11991500 11991709 -138791844 + MIR SINE MIR 3 214 -48 305 271 262 8 chr11 11992028 11992150 -138791403 + MIR SINE MIR 97 249 -13 427 312 58 98 chr11 11992232 11992527 -138791026 + L2 LINE L2 2990 3272 0 * 457 279 87 12 chr11 11992515 11992676 -138790877 + MIR3 SINE MIR 7 179 -29 2441 108 0 0 chr11 11993072 11993378 -138790175 + AluSx SINE Alu 1 306 -6 198 236 236 0 chr11 11993666 11993755 -138789798 + L2 LINE L2 3204 3313 0 323 268 106 78 chr11 11995572 11995714 -138787839 - MER91A DNA MER1_type -16 180 35 203 184 0 0 chr11 11996358 11996396 -138787157 + T-rich Low_complexity Low_complexity 1 38 0 194 143 20 0 chr11 11996854 11996903 -138786650 + (CA)n Simple_repeat Simple_repeat 1 50 0 283 307 37 31 chr11 11996910 11997136 -138786417 + (CATG)n Simple_repeat Simple_repeat 1 227 0 425 244 224 50 chr11 11997500 11997701 -138785852 + MIR SINE MIR 12 247 -15 411 268 23 90 chr11 11998093 11998265 -138785288 + MIR SINE MIR 7 165 -48 188 326 61 20 chr11 11998282 11998380 -138785173 - L2 LINE L2 0 3272 3171 227 240 52 31 chr11 11998756 11998852 -138784701 + MIR SINE MIR 34 131 -77 203 200 0 0 chr11 11999473 11999508 -138784045 - L2 LINE L2 -17 3255 3221 191 272 148 0 chr11 12000177 12000258 -138783295 - MER5A DNA MER1_type 0 189 97 * 274 253 40 0 chr11 12000190 12000265 -138783288 + MER5A DNA MER1_type 34 111 -78 * 1023 252 40 89 chr11 12000260 12000688 -138782865 - L2 LINE L2 0 3313 2907 24 32 0 0 chr11 12000695 12000726 -138782827 + AT_rich Low_complexity Low_complexity 1 31 0 839 136 0 0 chr11 12000726 12000844 -138782709 - FLAM_C SINE Alu -15 118 1 483 251 90 6 chr11 12001306 12001473 -138782080 - MIR SINE MIR -62 200 20 311 282 48 40 chr11 12002392 12002516 -138781037 - MER5B DNA MER1_type -51 127 3 466 214 13 82 chr11 12002557 12002716 -138780837 - MER112 DNA MER1_type -82 178 31 286 301 55 68 chr11 12003378 12003524 -138780029 - MIR SINE MIR -110 152 9 1800 167 33 3 chr11 12003620 12003919 -138779634 + AluJo SINE Alu 1 308 -4 198 349 0 16 chr11 12003920 12003983 -138779570 + MER5B DNA MER1_type 44 105 -73 930 241 76 17 chr11 12003993 12004284 -138779269 - L1MD2 LINE L1 0 6359 6052 192 306 108 45 chr11 12004365 12004633 -138778920 + L2 LINE L2 2386 2670 -644 441 127 25 0 chr11 12005670 12005749 -138777804 + L1MB7 LINE L1 6103 6183 -1 1775 168 35 0 chr11 12007977 12008263 -138775290 - AluJb SINE Alu -14 298 3 211 349 96 64 chr11 12008657 12008906 -138774647 + L2 LINE L2 3014 3270 -2 209 191 24 0 chr11 12009581 12009623 -138773930 + CT-rich Low_complexity Low_complexity 4 46 0 633 269 282 4 chr11 12010013 12010166 -138773387 - L2 LINE L2 0 3313 3204 2647 110 6 3 chr11 12010166 12010529 -138773024 - THE1B LTR MaLR 0 364 1 633 269 282 4 chr11 12010529 12010837 -138772716 - L2 LINE L2 -109 3204 2703 874 219 85 18 chr11 12011639 12011863 -138771690 - MIR SINE MIR -9 253 15 756 199 139 35 chr11 12011970 12012171 -138771382 - MER58A DNA MER1_type -2 222 1 196 324 130 28 chr11 12012181 12012289 -138771264 + MIR SINE MIR 20 138 -124 238 327 48 0 chr11 12012332 12012436 -138771117 - L2 LINE L2 -23 3249 3141 843 239 73 28 chr11 12013132 12013379 -138770174 + MIR SINE MIR 4 261 -1 523 322 29 37 chr11 12014148 12014393 -138769160 - MIR SINE MIR -1 261 19 231 262 79 56 chr11 12015385 12015511 -138768042 + MIR3 SINE MIR 5 133 -75 724 209 34 75 chr11 12016151 12016194 -138767359 - L2 LINE L2 -19 3294 3251 2432 91 50 19 chr11 12016194 12016558 -138766995 + THE1C LTR MaLR 1 375 0 724 209 34 75 chr11 12016558 12016753 -138766800 - L2 LINE L2 -62 3251 3066 490 297 34 0 chr11 12017618 12017736 -138765817 - L2 LINE L2 -3 3310 3189 * 562 230 38 61 chr11 12017726 12017928 -138765625 - MIR SINE MIR -44 218 23 408 156 0 21 chr11 12018912 12019008 -138764545 + L1MC4 LINE L1 7689 7782 -260 28 29 0 0 chr11 12019926 12019961 -138763592 + AT_rich Low_complexity Low_complexity 1 35 0 567 214 34 0 chr11 12019961 12020078 -138763475 + MER94 DNA DNA 14 134 0 410 162 40 50 chr11 12020100 12020199 -138763354 - MLT1A2 LTR MaLR -274 100 3 429 242 17 33 chr11 12020223 12020343 -138763210 + L2 LINE L2 3195 3312 -1 * 1076 285 71 18 chr11 12020339 12020792 -138762761 - L2 LINE L2 -576 2738 2262 690 336 8 8 chr11 12020875 12021128 -138762425 - MIR SINE MIR 0 262 10 212 278 167 0 chr11 12021195 12021267 -138762286 + MIR3 SINE MIR 112 195 -13 270 267 82 52 chr11 12024622 12024757 -138758796 - MLT1J2 LTR MaLR -90 360 222 915 266 136 57 chr11 12025895 12026579 -138756974 + L1ME3A LINE L1 5324 6066 -104 2520 88 0 0 chr11 12027111 12027419 -138756134 - AluSq SINE Alu -5 308 1 491 297 7 7 chr11 12027987 12028142 -138755411 - MER117 DNA MER1_type -42 155 1 333 271 0 12 chr11 12028300 12028385 -138755168 - MIR3 SINE MIR -7 201 118 463 291 233 18 chr11 12029189 12029532 -138754021 - L2 LINE L2 0 3313 2897 26 30 0 0 chr11 12030505 12030538 -138753015 + AT_rich Low_complexity Low_complexity 1 33 0 334 260 57 37 chr11 12030804 12030943 -138752610 - MIR SINE MIR -58 150 7 418 305 42 37 chr11 12031398 12031588 -138751965 - L2 LINE L2 -585 2729 2539 277 259 71 80 chr11 12032094 12032128 -138751425 + MIR SINE MIR 75 108 -154 2068 127 0 40 chr11 12032128 12032452 -138751101 - AluJb SINE Alu 0 312 2 277 259 71 80 chr11 12032452 12032529 -138751024 + MIR SINE MIR 108 185 -77 860 263 46 39 chr11 12032546 12032805 -138750748 - MIR SINE MIR 0 262 2 254 241 0 35 chr11 12032808 12032866 -138750687 + L2 LINE L2 3205 3260 -12 247 293 106 123 chr11 12033294 12033554 -138749999 - L2 LINE L2 0 3272 3020 917 124 0 0 chr11 12033554 12033675 -138749878 - FLAM_C SINE Alu -12 121 1 247 293 106 123 chr11 12033675 12033838 -138749715 - L2 LINE L2 -252 3020 2856 262 264 55 0 chr11 12034926 12035017 -138748536 + MIR3 SINE MIR 110 205 -3 927 300 171 19 chr11 12036447 12037246 -138746307 + L2 LINE L2 1829 2749 -565 2345 95 7 13 chr11 12037247 12037553 -138746000 + AluSx SINE Alu 1 304 -8 215 288 64 116 chr11 12037652 12037902 -138745651 + L2 LINE L2 2819 3055 -217 190 268 0 0 chr11 12037998 12038039 -138745514 + MER5B DNA MER1_type 1 41 -137 * 266 203 51 63 chr11 12038035 12038114 -138745439 - MER5B DNA MER1_type -64 114 37 230 336 78 78 chr11 12038129 12038257 -138745296 + L2 LINE L2 3145 3272 0 300 255 156 50 chr11 12038294 12038435 -138745118 + MER5A DNA MER1_type 2 157 -32 * 340 256 146 36 chr11 12038328 12038465 -138745088 - MER5B DNA MER1_type -24 154 3 236 298 92 50 chr11 12038654 12038795 -138744758 + L2 LINE L2 3124 3270 -2 408 239 84 52 chr11 12038907 12039062 -138744491 + MIR SINE MIR 102 261 -1 774 213 120 0 chr11 12039507 12039690 -138743863 - MLT1D LTR MaLR 0 505 301 7047 49 3 4 chr11 12139698 12141192 -138642361 - L1PA6 LINE L1 -166 5988 4495 230 352 111 28 chr11 12141208 12141316 -138642237 + L2 LINE L2 3145 3261 -11 344 167 14 14 chr11 12141869 12141941 -138641612 + MLT1C LTR MaLR 269 340 -127 29 28 0 0 chr11 12142065 12142101 -138641452 + AT_rich Low_complexity Low_complexity 1 36 0 2231 160 34 3 chr11 12142101 12142458 -138641095 + MLT1C LTR MaLR 100 467 0 849 270 38 5 chr11 12142747 12142958 -138640595 - MIR SINE MIR -14 248 31 193 324 169 7 chr11 12143073 12143209 -138640344 + L2 LINE L2 2232 2389 -925 1771 73 5 0 chr11 12143836 12144056 -138639497 - L1PA5 LINE L1 0 6154 5934 576 300 58 61 chr11 12144386 12144495 -138639058 + L2 LINE L2 2516 2624 -690 1005 216 0 0 chr11 12144495 12144662 -138638891 + FAM SINE Alu 1 167 -8 576 300 58 61 chr11 12144662 12144882 -138638671 + L2 LINE L2 2624 2844 -470 1659 173 3 18 chr11 12144894 12145178 -138638375 - AluJb SINE Alu -20 292 13 233 259 0 0 chr11 12145180 12145238 -138638315 + L2 LINE L2 2912 2969 -303 1466 195 62 0 chr11 12145303 12145575 -138637978 - AluJo SINE Alu -23 289 1 381 22 0 0 chr11 12145984 12146030 -138637523 + (CA)n Simple_repeat Simple_repeat 2 47 0 4291 191 43 69 chr11 12146974 12148522 -138635031 - L1MC4 LINE L1 -743 5403 4442 378 0 0 0 chr11 12148522 12148564 -138634989 + (TA)n Simple_repeat Simple_repeat 2 43 0 4291 191 43 69 chr11 12148564 12148667 -138634886 - L1MC4 LINE L1 -1704 4442 4338 637 231 14 0 chr11 12148662 12148809 -138634744 + L1MD3 LINE L1 7842 7990 -5 * 355 227 182 9 chr11 12149026 12149136 -138634417 + MIR SINE MIR 29 157 -105 581 277 36 36 chr11 12149265 12149431 -138634122 + MIR SINE MIR 13 178 -84 1911 124 10 27 chr11 12149489 12149787 -138633766 + AluSq SINE Alu 1 293 -20 1838 140 14 3 chr11 12149804 12150097 -138633456 + AluJb SINE Alu 4 299 -13 1017 78 35 0 chr11 12150139 12150280 -138633273 - AluSg/x SINE Alu -10 300 155 1465 50 0 28 chr11 12150380 12150561 -138632992 - AluY SINE Alu -135 176 1 5282 144 27 47 chr11 12150561 12151400 -138632153 - L1MA7 LINE L1 -136 6155 5314 1742 155 3 24 chr11 12151400 12151696 -138631857 + AluJo SINE Alu 1 290 -22 5282 144 27 47 chr11 12151696 12152010 -138631543 - L1MA7 LINE L1 -977 5314 4995 610 290 56 52 chr11 12152088 12152141 -138631412 - MIR SINE MIR -3 259 208 2394 87 7 0 chr11 12152141 12152439 -138631114 - AluY SINE Alu -11 300 1 610 290 56 52 chr11 12152439 12152637 -138630916 - MIR SINE MIR -54 208 7 488 48 71 36 chr11 12153950 12154034 -138629519 + L1MA4 LINE L1 6213 6299 -1 892 118 0 52 chr11 12154080 12154215 -138629338 + FLAM_C SINE Alu 1 128 -15 213 180 40 20 chr11 12154372 12154422 -138629131 + MIR3 SINE MIR 109 159 -49 443 191 0 75 chr11 12155059 12155153 -138628400 + MER21B LTR ERV1 1 87 -776 3458 197 78 30 chr11 12155177 12155949 -138627604 + MER21B LTR ERV1 19 827 -36 312 295 72 0 chr11 12156996 12157135 -138626418 - MIR SINE MIR -13 249 101 189 0 0 0 chr11 12159556 12159577 -138623976 + (CTG)n Simple_repeat Simple_repeat 3 23 0 188 295 16 16 chr11 12159640 12159701 -138623852 - L2 LINE L2 -4 3309 3249 317 288 24 0 chr11 12160230 12160355 -138623198 + L1MEc LINE L1 1545 1672 -4724 4891 221 78 41 chr11 12160361 12160616 -138622937 + L1M4 LINE L1 2901 3145 -3001 2791 52 41 9 chr11 12160616 12160959 -138622594 + L1PA7 LINE L1 5801 6154 0 4891 221 78 41 chr11 12160959 12161064 -138622489 + L1M4 LINE L1 3145 3245 -2901 1930 151 10 13 chr11 12161064 12161376 -138622177 + AluJb SINE Alu 1 311 -1 4891 221 78 41 chr11 12161376 12162941 -138620612 + L1M4 LINE L1 3245 4953 -1193 792 160 6 12 chr11 12162941 12163110 -138620443 + GA-rich Low_complexity Low_complexity 2 169 0 510 141 101 0 chr11 12163120 12163219 -138620334 + L1M4 LINE L1 4964 5072 -1074 561 254 6 48 chr11 12163274 12163439 -138620114 - MLT2F LTR ERVL -505 158 1 692 291 4 16 chr11 12163440 12163691 -138619862 + L1ME3A LINE L1 4932 5179 -967 1042 219 89 11 chr11 12163793 12164121 -138619432 + L1ME3A LINE L1 5258 5637 -533 1255 147 87 19 chr11 12164201 12164583 -138618970 - MLT2A2 LTR ERVL 0 453 146 390 58 0 0 chr11 12164577 12164629 -138618924 + MADE1 DNA Mariner 29 80 0 * 913 230 72 57 chr11 12164635 12164953 -138618600 + L1ME3A LINE L1 5840 6162 -8 230 203 31 0 chr11 12167698 12167762 -138615791 + MLT1H LTR MaLR 21 86 -463 1044 224 120 87 chr11 12167798 12168223 -138615330 - MER41B LTR ERV1 -35 600 162 1123 69 0 2 chr11 12170219 12170467 -138613086 + AluY SINE Alu 1 301 -10 263 286 133 0 chr11 12171824 12171929 -138611624 - MIR SINE MIR -65 197 79 757 296 98 24 chr11 12173286 12173891 -138609662 + L1MC4a LINE L1 5176 5849 -355 747 133 59 0 chr11 12173890 12174025 -138609528 + L1MD3 LINE L1 7729 7871 -124 * 265 231 0 0 chr11 12174027 12174079 -138609474 + LTR30 LTR ERV1 1 52 -670 1554 53 126 0 chr11 12174079 12174286 -138609267 + LTR12 LTR ERV1 53 285 -429 269 239 28 0 chr11 12174286 12174357 -138609196 + LTR30 LTR ERV1 552 624 -98 734 180 25 0 chr11 12174357 12174479 -138609074 + LTR12 LTR ERV1 359 483 -231 305 130 0 0 chr11 12174501 12174555 -138608998 + L1MD3 LINE L1 7942 7995 0 2399 103 0 0 chr11 12174816 12175128 -138608425 - AluSx SINE Alu 0 312 1 826 234 20 70 chr11 12175329 12175573 -138607980 - MIR SINE MIR -2 260 29 2453 82 3 0 chr11 12175926 12176231 -138607322 - AluSp SINE Alu -7 306 1 24 0 0 0 chr11 12176740 12176764 -138606789 + AT_rich Low_complexity Low_complexity 1 24 0 244 330 89 18 chr11 12176998 12177110 -138606443 - L2 LINE L2 -4 3268 3149 385 345 17 0 chr11 12177146 12177262 -138606291 - MER91A DNA MER1_type -77 119 2 22 35 0 0 chr11 12177868 12177897 -138605656 + AT_rich Low_complexity Low_complexity 1 29 0 698 230 35 74 chr11 12177908 12177978 -138605575 - Charlie7 DNA MER1_type -1920 692 621 1432 185 31 28 chr11 12177978 12178265 -138605288 + AluJo SINE Alu 1 288 -24 698 230 35 74 chr11 12178265 12178451 -138605102 - Charlie7 DNA MER1_type -1991 621 446 840 278 68 0 chr11 12178453 12178687 -138604866 + MIR SINE MIR 2 251 -11 2193 189 7 36 chr11 12178687 12179132 -138604421 - Tigger2a DNA MER2_type -1 433 2 344 231 16 58 chr11 12179166 12179287 -138604266 - Charlie7 DNA MER1_type -2170 442 327 288 263 53 21 chr11 12179381 12179476 -138604077 - Charlie7 DNA MER1_type -2428 184 87 222 233 0 0 chr11 12179479 12179539 -138604014 + (TA)n Simple_repeat Simple_repeat 1 60 0 2015 150 17 50 chr11 12179539 12179687 -138603866 - MER7A DNA MER2_type -2692 346 195 2585 94 20 8 chr11 12179687 12180038 -138603515 + THE1A LTR MaLR 1 355 0 12276 101 4 6 chr11 12180038 12181620 -138601933 + THE1A-int LTR MaLR 1 1578 -2 2627 98 8 14 chr11 12181622 12181979 -138601574 + THE1A LTR MaLR 1 355 0 2015 150 17 50 chr11 12181979 12182186 -138601367 - MER7A DNA MER2_type -2843 195 1 460 219 21 25 chr11 12182194 12182439 -138601114 + (TATG)n Simple_repeat Simple_repeat 1 244 0 346 255 0 59 chr11 12182440 12182542 -138601011 - Charlie7 DNA MER1_type -2512 100 5 198 315 27 27 chr11 12182806 12182879 -138600674 - L2 LINE L2 -4 3268 3196 23 54 0 0 chr11 12182963 12183000 -138600553 + AT_rich Low_complexity Low_complexity 1 37 0 429 20 0 0 chr11 12183110 12183160 -138600393 + (TG)n Simple_repeat Simple_repeat 2 51 0 1960 123 3 11 chr11 12183161 12183445 -138600108 - AluSx SINE Alu -30 282 1 324 266 48 48 chr11 12183537 12183661 -138599892 + L2 LINE L2 3189 3312 -1 415 301 74 40 chr11 12183709 12183802 -138599751 - MIR3 SINE MIR -8 200 112 1564 212 98 22 chr11 12183802 12184170 -138599383 + MSTD LTR MaLR 1 396 0 415 301 74 40 chr11 12184170 12184252 -138599301 - MIR3 SINE MIR -96 112 19 2180 90 11 0 chr11 12184681 12184959 -138598594 + AluSq SINE Alu 3 283 -30 1040 85 0 0 chr11 12184829 12184959 -138598594 + AluSp/q SINE Alu 154 309 0 235 0 0 0 chr11 12184959 12184985 -138598568 + (TAA)n Simple_repeat Simple_repeat 2 180 0 1545 205 7 3 chr11 12185006 12185304 -138598249 - L1MD3 LINE L1 -127 7868 7570 348 247 13 0 chr11 12185412 12185489 -138598064 - L2 LINE L2 -5 3308 3231 1148 334 87 23 chr11 12185493 12186277 -138597276 - L2 LINE L2 -245 3068 2236 760 250 102 12 chr11 12186493 12186867 -138596686 + Charlie7 DNA MER1_type 57 509 -2103 385 160 53 0 chr11 12186916 12186989 -138596564 + Charlie7 DNA MER1_type 1817 1893 -719 792 168 15 86 chr11 12186989 12187186 -138596367 - MER96B DNA MER1_type? 0 417 235 1774 179 145 81 chr11 12187190 12187860 -138595693 + Charlie7 DNA MER1_type 1898 2610 -2 192 125 0 0 chr11 12188882 12188914 -138594639 + (CGG)n Simple_repeat Simple_repeat 2 33 0 180 0 0 0 chr11 12189745 12189765 -138593788 + (T)n Simple_repeat Simple_repeat 1 20 0 598 292 23 12 chr11 12191302 12191473 -138592080 - MIR3 SINE MIR -6 202 30 1083 189 137 8 chr11 12191822 12192070 -138591483 + MER58 DNA MER1_type 1 280 -2140 186 340 0 0 chr11 12192525 12192575 -138590978 + L2 LINE L2 3213 3262 -10 276 325 207 32 chr11 12192583 12192989 -138590564 - L3 LINE CR1 -18 1559 1083 412 219 52 10 chr11 12193499 12193595 -138589958 - MIR SINE MIR 0 262 163 512 315 158 20 chr11 12194219 12194711 -138588842 + L2 LINE L2 2148 2707 -607 518 216 74 27 chr11 12194796 12194944 -138588609 - MIR SINE MIR -30 232 78 567 192 110 107 chr11 12195017 12195088 -138588465 - HAL1 LINE L1 0 2507 2438 1766 157 109 3 chr11 12195088 12195401 -138588152 - MER7A DNA MER2_type -1 345 2 567 192 110 107 chr11 12195401 12195512 -138588041 - HAL1 LINE L1 -69 2438 2329 2398 77 0 7 chr11 12195512 12195811 -138587742 - AluSc SINE Alu -12 297 1 567 192 110 107 chr11 12195811 12195955 -138587598 - HAL1 LINE L1 -178 2329 2179 832 179 0 8 chr11 12195981 12196104 -138587449 - FLAM_C SINE Alu -20 123 2 1741 250 103 29 chr11 12196163 12196225 -138587328 - HAL1 LINE L1 -456 2051 1995 928 182 101 57 chr11 12196225 12196434 -138587119 + MER20 DNA MER1_type 2 219 0 1741 250 103 29 chr11 12196434 12197131 -138586422 - HAL1 LINE L1 -512 1995 1236 196 319 62 0 chr11 12197309 12197422 -138586131 + L2 LINE L2 2519 2638 -676 * 462 219 38 9 chr11 12197421 12197526 -138586027 - L2 LINE L2 -2 3311 3204 246 340 46 26 chr11 12197568 12197762 -138585791 + L2 LINE L2 2662 2859 -455 414 348 63 63 chr11 12198349 12198743 -138584810 + L2 LINE L2 2870 3263 -9 643 268 168 24 chr11 12198763 12199103 -138584450 + L2 LINE L2 2908 3296 -17 426 85 0 0 chr11 12199110 12199169 -138584384 + (GGGA)n Simple_repeat Simple_repeat 4 62 0 596 278 17 6 chr11 12199686 12199862 -138583691 - MER5B DNA MER1_type 0 178 1 327 384 141 0 chr11 12200431 12200728 -138582825 - L2 LINE L2 -2 3270 2932 723 243 53 70 chr11 12200829 12201072 -138582481 - MIR SINE MIR -4 258 20 2278 106 10 10 chr11 12201078 12201389 -138582164 - AluSx SINE Alu 0 312 2 208 351 236 3 chr11 12201560 12201853 -138581700 - L2 LINE L2 -670 2644 2284 947 128 54 0 chr11 12203002 12203151 -138580402 - AluSg/x SINE Alu -4 306 150 293 324 120 21 chr11 12203302 12203444 -138580109 + L2 LINE L2 3111 3266 -6 344 338 47 27 chr11 12203737 12203885 -138579668 - MIR SINE MIR -76 186 36 363 327 111 35 chr11 12204782 12204981 -138578572 + MIR SINE MIR 49 262 0 329 0 0 24 chr11 12205026 12205068 -138578485 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 20119 39 1 0 chr11 12205068 12208134 -138575419 - L1PA4 LINE L1 -11 6144 3071 2193 91 30 7 chr11 12208449 12208745 -138574808 - AluSx SINE Alu -9 303 1 470 283 43 8 chr11 12209258 12209410 -138574143 - MIR SINE MIR -67 141 36 596 267 27 14 chr11 12209606 12209752 -138573801 - MIR SINE MIR -34 228 81 868 245 65 86 chr11 12209775 12210158 -138573395 + MLT1I LTR MaLR 35 409 0 290 348 0 0 chr11 12210158 12210247 -138573306 - MIR SINE MIR -169 93 5 25 0 0 0 chr11 12210358 12210383 -138573170 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr11 12210700 12210733 -138572820 + AT_rich Low_complexity Low_complexity 1 33 0 1426 204 50 66 chr11 12211286 12211682 -138571871 - MLT1B LTR MaLR 0 390 1 1967 144 0 22 chr11 12212051 12212363 -138571190 - AluSx SINE Alu -7 305 1 2049 94 7 21 chr11 12213343 12213656 -138569897 - AluSx SINE Alu 0 309 1 1507 207 78 21 chr11 12213942 12214314 -138569239 - L1ME1 LINE L1 -8 6158 5766 2415 48 21 0 chr11 12214330 12214619 -138568934 - AluY SINE Alu -16 295 1 243 265 294 0 chr11 12214635 12214737 -138568816 + MIR SINE MIR 104 235 -27 216 0 0 0 chr11 12216205 12216229 -138567324 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 3343 22 16 0 chr11 12216229 12216600 -138566953 - L1PA2 LINE L1 0 6155 5779 25 0 0 0 chr11 12216683 12216708 -138566845 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr11 12216779 12216803 -138566750 + (CAA)n Simple_repeat Simple_repeat 3 26 0 821 339 93 13 chr11 12216887 12217347 -138566206 + L3 LINE CR1 1056 1552 -25 346 187 68 13 chr11 12218518 12218626 -138564927 + FRAM/FAM SINE Alu 11 73 -102 884 199 18 58 chr11 12220805 12221031 -138562522 - L1MA10 LINE L1 0 6334 6118 1194 136 57 0 chr11 12221041 12221337 -138562216 - L1P LINE L1 -730 5426 5106 3438 190 3 0 chr11 12221426 12222088 -138561465 - L1 LINE L1 -919 5227 4564 3598 108 124 47 chr11 12222098 12222776 -138560777 + L1PB4 LINE L1 5427 6156 0 1913 198 44 5 chr11 12222775 12223159 -138560394 - L1MA9 LINE L1 -188 6124 5726 * 1988 146 10 0 chr11 12223283 12223577 -138559976 + AluSx SINE Alu 1 297 -15 2064 111 7 30 chr11 12223711 12224008 -138559545 + AluSc SINE Alu 1 290 -19 221 106 0 85 chr11 12224093 12224140 -138559413 - L2 LINE L2 0 3313 3271 183 102 0 184 chr11 12224113 12224162 -138559391 - MIR SINE MIR -10 252 213 * 220 335 100 39 chr11 12224778 12225088 -138558465 + L2 LINE L2 858 1186 -2128 2293 285 191 13 chr11 12225236 12226453 -138557100 + L2 LINE L2 1808 3255 -58 447 257 142 0 chr11 12226635 12226783 -138556770 + L2 LINE L2 2587 2755 -559 754 183 14 0 chr11 12226951 12227093 -138556460 + L1MA8 LINE L1 6145 6288 -3 187 256 0 0 chr11 12229145 12229184 -138554369 + L2 LINE L2 3226 3264 -8 307 204 45 57 chr11 12230548 12230636 -138552917 - LTR33A LTR ERVL 0 523 437 241 280 140 64 chr11 12230763 12230920 -138552633 - MLT2E LTR ERVL -420 208 40 654 236 13 25 chr11 12231158 12231315 -138552238 - L2 LINE L2 0 3313 3159 1266 196 19 11 chr11 12231328 12231594 -138551959 - L1MB8 LINE L1 0 6178 5911 415 305 47 0 chr11 12232250 12232378 -138551175 + MIR SINE MIR 113 246 -16 738 214 107 28 chr11 12233394 12233609 -138549944 + MIR SINE MIR 18 249 -13 458 319 27 21 chr11 12233691 12233878 -138549675 + MIR SINE MIR 30 216 -46 461 249 112 6 chr11 12234226 12234395 -138549158 + MIR SINE MIR 73 259 -3 329 282 194 70 chr11 12234710 12235096 -138548457 - L2 LINE L2 -22 3250 2817 190 324 40 40 chr11 12235213 12235361 -138548192 - L2 LINE L2 -840 2474 2327 210 405 32 14 chr11 12237218 12237438 -138546115 - L2 LINE L2 -208 3064 2841 331 395 34 8 chr11 12237756 12237875 -138545678 + L2 LINE L2 3111 3232 -40 2094 118 3 23 chr11 12238703 12239008 -138544545 + AluSx SINE Alu 1 299 -13 885 253 54 8 chr11 12239364 12239605 -138543948 - MIR SINE MIR -10 252 1 2040 149 12 18 chr11 12239623 12239958 -138543595 + L1MB5 LINE L1 5842 6174 0 564 260 38 53 chr11 12241806 12242166 -138541387 - L1MC4a LINE L1 -85 6036 5684 188 245 20 0 chr11 12243546 12243595 -138539958 - L2 LINE L2 0 3313 3264 598 255 139 23 chr11 12243795 12244011 -138539542 - MIR SINE MIR 0 262 22 2385 81 0 19 chr11 12244011 12244319 -138539234 - AluSc SINE Alu -7 302 1 745 224 51 41 chr11 12244727 12244923 -138538630 + MIR SINE MIR 20 217 -45 366 127 18 0 chr11 12245099 12245154 -138538399 - MLT1B LTR MaLR 0 467 412 2090 110 3 32 chr11 12245192 12245222 -138538331 + MER1A DNA MER1_type 230 259 -2443 2177 115 0 3 chr11 12245222 12245517 -138538036 + AluSc SINE Alu 1 294 -15 2090 110 3 32 chr11 12245517 12245795 -138537758 + MER1A DNA MER1_type 259 529 0 1594 164 16 85 chr11 12245795 12246164 -138537389 - MLT1B LTR MaLR -47 343 1 332 309 36 27 chr11 12246264 12246374 -138537179 - MIR SINE MIR -131 131 21 402 272 24 0 chr11 12246492 12246617 -138536936 - MIR3 SINE MIR -4 204 77 433 311 40 6 chr11 12247294 12247471 -138536082 + MIR SINE MIR 62 244 -18 22 0 0 0 chr11 12247472 12247494 -138536059 + AT_rich Low_complexity Low_complexity 1 22 0 684 246 66 66 chr11 12247929 12248185 -138535368 + Charlie8 DNA MER1_type 31 286 -2131 181 246 0 66 chr11 12248354 12248415 -138535138 - MIR SINE MIR -2 260 204 1863 138 0 0 chr11 12248719 12248988 -138534565 + AluJb SINE Alu 26 294 -18 1038 295 107 44 chr11 12249511 12251183 -138532370 - L1P4 LINE L1 -529 5636 3838 1800 158 11 0 chr11 12251183 12251488 -138532065 + AluSx SINE Alu 1 308 0 1038 295 107 44 chr11 12251488 12251613 -138531940 - L1P4 LINE L1 -2327 3838 3722 198 0 0 0 chr11 12253334 12253356 -138530197 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 21 0 0 0 chr11 12253636 12253657 -138529896 + AT_rich Low_complexity Low_complexity 1 21 0 1158 273 129 19 chr11 12253840 12254368 -138529185 - L1ME3A LINE L1 -202 5968 5383 239 312 81 43 chr11 12254534 12254720 -138528833 + L2 LINE L2 2687 2879 -435 21 36 0 0 chr11 12255434 12255462 -138528091 + AT_rich Low_complexity Low_complexity 1 28 0 393 180 19 50 chr11 12255471 12255592 -138527961 - MIR SINE MIR -93 115 25 358 156 78 0 chr11 12256742 12256806 -138526747 + MER3 DNA MER1_type 40 108 -101 1873 121 71 4 chr11 12257035 12257316 -138526237 - L1MB7 LINE L1 -2 6182 5883 393 347 41 0 chr11 12257432 12257580 -138525973 - MIR SINE MIR -65 143 38 583 333 51 81 chr11 12258638 12259107 -138524446 + L2 LINE L2 2817 3271 -1 620 317 75 33 chr11 12259565 12260016 -138523537 + MLT1L LTR MaLR 142 611 -4 252 59 0 0 chr11 12260548 12260582 -138522971 + (TTA)n Simple_repeat Simple_repeat 1 34 0 243 255 96 0 chr11 12260595 12260689 -138522864 - L1ME3 LINE L1 -20 6142 6040 848 240 47 108 chr11 12260934 12261296 -138522257 + MER102b DNA MER1_type 2 341 0 258 321 252 0 chr11 12261453 12261584 -138521969 + MIR SINE MIR 86 249 -13 646 318 37 30 chr11 12262148 12262444 -138521109 + L2 LINE L2 2644 2941 -373 345 361 28 14 chr11 12262723 12262867 -138520686 + L2 LINE L2 3127 3272 0 195 302 0 19 chr11 12264239 12264292 -138519261 + MIR SINE MIR 35 86 -176 575 315 34 17 chr11 12264700 12264938 -138518615 + L2 LINE L2 2508 2749 -565 508 196 10 20 chr11 12265025 12265127 -138518426 - L2 LINE L2 0 3313 3213 1670 183 75 51 chr11 12267271 12267327 -138516226 - MLT2B1 LTR ERVL 0 414 361 477 0 0 0 chr11 12267327 12267380 -138516173 + (CA)n Simple_repeat Simple_repeat 2 54 0 1670 183 75 51 chr11 12267380 12267759 -138515794 - MLT2B1 LTR ERVL -53 361 3 561 217 78 0 chr11 12268513 12268642 -138514911 - L2 LINE L2 0 3313 3175 276 272 12 12 chr11 12268790 12268871 -138514682 - MLT1K LTR MaLR 0 588 508 232 210 48 16 chr11 12269131 12269193 -138514360 - MLT1K LTR MaLR -343 245 182 272 193 24 60 chr11 12269443 12269526 -138514027 + MIR SINE MIR 183 262 0 24 32 0 0 chr11 12270042 12270073 -138513480 + AT_rich Low_complexity Low_complexity 1 31 0 747 181 222 6 chr11 12270337 12270508 -138513045 + MER3 DNA MER1_type 1 208 -1 244 284 202 0 chr11 12270648 12270757 -138512796 - L2 LINE L2 -1 3271 3141 380 364 12 24 chr11 12271204 12271369 -138512184 - L2 LINE L2 -528 2786 2624 2382 94 0 0 chr11 12271692 12271990 -138511563 - AluY SINE Alu -13 298 1 376 368 118 0 chr11 12272361 12272565 -138510988 + L3 LINE CR1 1302 1529 -48 302 208 0 0 chr11 12272844 12272897 -138510656 + MER20 DNA MER1_type 167 219 0 265 310 155 8 chr11 12273677 12273806 -138509747 + MIR SINE MIR 22 169 -93 186 286 24 0 chr11 12273816 12273858 -138509695 + L2 LINE L2 3259 3301 -12 855 201 84 80 chr11 12273874 12274226 -138509327 - L1MA9 LINE L1 -25 6275 5928 811 203 7 0 chr11 12274598 12274751 -138508802 - FRAM SINE Alu -14 162 9 2411 66 3 13 chr11 12274768 12275071 -138508482 - AluY SINE Alu -11 300 1 1768 156 25 3 chr11 12276270 12276552 -138507001 + AluJb SINE Alu 1 288 -24 1714 201 27 70 chr11 12276637 12277051 -138506502 + MSTD LTR MaLR 1 396 0 2115 133 0 0 chr11 12277084 12277378 -138506175 + AluSx SINE Alu 1 294 -18 239 146 0 0 chr11 12277390 12277431 -138506122 + L1MC4 LINE L1 6663 6703 -1339 200 132 94 19 chr11 12277431 12277452 -138506101 + (CATA)n Simple_repeat Simple_repeat 4 22 -38 2458 190 68 6 chr11 12277452 12277925 -138505628 + MLT1D LTR MaLR 3 504 -1 200 132 94 19 chr11 12277925 12277956 -138505597 + (CATA)n Simple_repeat Simple_repeat 22 60 0 918 161 57 16 chr11 12278060 12278252 -138505301 + MIR SINE MIR 41 240 -22 357 252 173 22 chr11 12278244 12278383 -138505170 - MIR SINE MIR -100 162 3 * 37 23 0 0 chr11 12278521 12278565 -138504988 + AT_rich Low_complexity Low_complexity 1 44 0 852 292 67 29 chr11 12278747 12279439 -138504114 - L1MC4a LINE L1 -367 5795 5273 989 209 0 31 chr11 12279528 12279724 -138503829 + MER58A DNA MER1_type 27 216 -8 464 281 41 51 chr11 12279728 12279924 -138503629 - L1M4 LINE L1 -330 5791 5598 688 328 42 4 chr11 12280007 12280245 -138503308 - MIR SINE MIR -15 247 1 248 231 0 0 chr11 12280570 12280622 -138502931 + MIR SINE MIR 80 131 -131 24428 65 2 1 chr11 12280963 12284019 -138499534 + L1P LINE L1 11 3069 -3077 214 247 27 0 chr11 12384196 12384269 -138399284 + G-rich Low_complexity Low_complexity 3 77 0 21 71 0 0 chr11 12384308 12384350 -138399203 + GC_rich Low_complexity Low_complexity 1 42 0 191 59 0 59 chr11 12384910 12384944 -138398609 + (CGGGG)n Simple_repeat Simple_repeat 3 34 0 374 210 25 0 chr11 12385853 12385934 -138397619 + MIR SINE MIR 47 129 -133 728 258 48 48 chr11 12388789 12389018 -138394535 - MIR SINE MIR -26 236 8 208 427 68 0 chr11 12389299 12389416 -138394137 - MER5B DNA MER1_type -26 152 28 26 0 0 0 chr11 12389803 12389829 -138393724 + AT_rich Low_complexity Low_complexity 1 26 0 855 292 101 11 chr11 12390336 12390703 -138392850 - LTR16C LTR ERVL -16 475 76 695 285 47 42 chr11 12390782 12390996 -138392557 + MIR SINE MIR 35 249 -13 340 320 103 13 chr11 12392458 12392614 -138390939 + MIR SINE MIR 38 207 -55 2072 115 16 45 chr11 12392739 12393051 -138390502 + AluSx SINE Alu 1 303 -9 2275 83 0 7 chr11 12393051 12393378 -138390175 + AluSx SINE Alu 1 325 0 265 314 122 58 chr11 12393713 12393869 -138389684 - MIR3 SINE MIR -7 201 36 1441 122 19 14 chr11 12393881 12394119 -138389434 - AluSg/x SINE Alu 0 310 87 362 316 8 8 chr11 12394464 12394581 -138388972 - MIR SINE MIR -3 259 143 200 286 0 0 chr11 12396741 12396790 -138386763 - MER91A DNA MER1_type -147 49 1 1783 152 17 26 chr11 12398169 12398471 -138385082 + AluJo SINE Alu 1 299 -13 283 301 211 0 chr11 12399160 12399293 -138384260 + MIR SINE MIR 47 207 -55 300 282 160 32 chr11 12400043 12400199 -138383354 + L1MC4a LINE L1 5735 5910 -1898 533 288 87 6 chr11 12400397 12400660 -138382893 - L1MC/D LINE L1 -480 5641 5401 618 134 31 0 chr11 12400681 12400778 -138382775 - MSTB1 LTR MaLR -13 419 320 782 263 39 22 chr11 12401159 12401391 -138382162 + MIR SINE MIR 14 249 -13 314 175 53 0 chr11 12401679 12401736 -138381817 + LTR40a LTR ERVL 3 62 -457 896 196 91 5 chr11 12401736 12401945 -138381608 - MSTB1 LTR MaLR -2 430 204 913 170 0 0 chr11 12401975 12402116 -138381437 - FLAM_C SINE Alu -2 141 1 856 183 118 0 chr11 12402116 12402285 -138381268 - MSTB1 LTR MaLR -236 190 2 1599 218 27 9 chr11 12402288 12402676 -138380877 + LTR40a LTR ERVL 58 519 0 238 274 53 101 chr11 12402676 12402955 -138380598 - L2 LINE L2 -227 3045 2759 417 323 87 0 chr11 12403572 12403733 -138379820 - MIR SINE MIR -35 227 53 2996 158 32 62 chr11 12403812 12404471 -138379082 - L1MB2 LINE L1 -7 6164 5526 386 258 33 26 chr11 12405899 12406050 -138377503 - MER117 DNA MER1_type -3 194 43 229 333 53 0 chr11 12406088 12406163 -138377390 - MIR3 SINE MIR -49 159 81 214 288 81 54 chr11 12406399 12406510 -138377043 + L2 LINE L2 3199 3312 -1 494 278 123 11 chr11 12406654 12406841 -138376712 - MIR SINE MIR -7 255 48 392 284 105 70 chr11 12407747 12407976 -138375577 - MIR SINE MIR -6 256 20 415 324 76 16 chr11 12408026 12408211 -138375342 - MIR SINE MIR -7 255 60 208 254 0 0 chr11 12408842 12408897 -138374656 + T-rich Low_complexity Low_complexity 1 55 0 1368 257 66 0 chr11 12409021 12409445 -138374108 + Charlie4a DNA MER1_type 56 507 -1 816 232 49 40 chr11 12413776 12414000 -138369553 + MIR SINE MIR 36 261 -1 801 148 0 37 chr11 12414075 12414210 -138369343 + FLAM_C SINE Alu 3 132 -1 799 110 0 15 chr11 12414229 12414365 -138369188 + (GAA)n Simple_repeat Simple_repeat 2 135 0 658 210 114 0 chr11 12414639 12414806 -138368747 - MER53 DNA DNA 0 189 4 374 173 102 87 chr11 12416173 12416300 -138367253 + MIR SINE MIR 18 146 -62 483 255 180 6 chr11 12416729 12416890 -138366663 - MIR SINE MIR -48 214 26 863 159 26 7 chr11 12417575 12417726 -138365827 - MLT1C LTR MaLR 0 467 314 1044 165 16 31 chr11 12417823 12418017 -138365536 - AluSg/x SINE Alu -4 308 118 1650 185 87 6 chr11 12418069 12418415 -138365138 + MSTD LTR MaLR 21 394 -2 300 202 83 36 chr11 12419465 12419549 -138364004 + MIR SINE MIR 62 149 -113 271 246 0 0 chr11 12420601 12420658 -138362895 - MIR SINE MIR -150 112 56 298 234 0 0 chr11 12421264 12421328 -138362225 - L2 LINE L2 -1 3312 3249 383 284 87 83 chr11 12421455 12421787 -138361766 - L1ME LINE L1 -297 5824 5488 1622 202 91 60 chr11 12421787 12422273 -138361280 - MLT1D LTR MaLR -2 503 3 383 284 87 83 chr11 12422273 12422444 -138361109 - L1ME LINE L1 -633 5488 5319 234 371 43 9 chr11 12422467 12422583 -138360970 + L2 LINE L2 3137 3256 -16 227 248 168 56 chr11 12422798 12422923 -138360630 + MIR SINE MIR 90 228 -34 493 145 12 12 chr11 12424636 12424719 -138358834 + AluJ/FLAM SINE Alu 2 84 -228 202 277 88 25 chr11 12426463 12426622 -138356931 + L2 LINE L2 2921 3089 -183 291 310 128 38 chr11 12427014 12427327 -138356226 - L2 LINE L2 -927 2387 2047 849 128 0 0 chr11 12427501 12427618 -138355935 + FLAM_C SINE Alu 7 123 -20 295 314 112 18 chr11 12428825 12429048 -138354505 - MIR SINE MIR -15 247 4 376 331 100 0 chr11 12429985 12430115 -138353438 - MIR SINE MIR -16 246 104 445 319 115 42 chr11 12430243 12430651 -138352902 - L2 LINE L2 -6 3266 2829 1057 191 71 42 chr11 12431184 12431493 -138352060 - MLT1D LTR MaLR -131 374 57 520 160 47 9 chr11 12431484 12431590 -138351963 - MLT1D LTR MaLR -361 144 35 * 388 275 106 21 chr11 12436974 12437116 -138346437 - MIR SINE MIR 0 262 109 1499 156 44 16 chr11 12437171 12437486 -138346067 + MER33 DNA MER1_type 1 324 0 319 197 142 63 chr11 12437942 12438069 -138345484 - HAL1b LINE L1 -19 1329 1193 233 160 20 20 chr11 12438194 12438244 -138345309 - L1MC/D LINE L1 -2048 5760 5711 317 82 41 0 chr11 12438268 12438317 -138345236 + AluY SINE Alu 85 135 -166 231 326 87 23 chr11 12438460 12438632 -138344921 - L1MC/D LINE L1 -529 5592 5410 385 279 101 73 chr11 12438659 12439085 -138344468 - L1MC/D LINE L1 -824 5322 4885 30 0 0 0 chr11 12439421 12439451 -138344102 + AT_rich Low_complexity Low_complexity 1 30 0 226 303 151 0 chr11 12440206 12440325 -138343228 + L2 LINE L2 3128 3264 -8 2033 158 74 12 chr11 12440973 12441377 -138342176 + MLT1C LTR MaLR 1 429 -38 859 43 29 22 chr11 12442977 12443115 -138340438 + (GAAA)n Simple_repeat Simple_repeat 1 139 0 431 311 64 38 chr11 12443658 12443983 -138339570 + L1ME2 LINE L1 5621 5953 -246 3205 164 36 93 chr11 12444456 12445292 -138338261 + L1PA16 LINE L1 4710 5593 -573 2500 112 16 19 chr11 12445292 12445668 -138337885 + THE1C LTR MaLR 1 375 0 9736 112 40 52 chr11 12445668 12447267 -138336286 + THE1B-int LTR MaLR 1 1580 0 2790 97 0 0 chr11 12447267 12447628 -138335925 + THE1B LTR MaLR 1 361 -3 3205 164 36 93 chr11 12447628 12448276 -138335277 + L1PA16 LINE L1 5590 6107 -59 186 71 0 0 chr11 12448285 12448313 -138335240 + (TAA)n Simple_repeat Simple_repeat 3 30 0 351 282 0 51 chr11 12450106 12450223 -138333330 - MER5B DNA MER1_type -1 177 67 1357 223 64 9 chr11 12450737 12451082 -138332471 + L1ME1 LINE L1 5803 6166 0 187 378 25 17 chr11 12451262 12451381 -138332172 + MIR SINE MIR 16 135 -73 549 294 23 14 chr11 12451472 12451686 -138331867 + MIR SINE MIR 47 262 0 396 250 214 14 chr11 12452385 12452525 -138331028 - MER5A DNA MER1_type -9 180 13 1618 116 102 69 chr11 12452962 12453286 -138330267 + THE1C LTR MaLR 1 340 -35 2200 93 41 0 chr11 12453286 12453577 -138329976 - AluY SINE Alu -7 304 2 1618 116 102 69 chr11 12453577 12453615 -138329938 + THE1C LTR MaLR 340 375 0 517 306 88 10 chr11 12453837 12454131 -138329422 - L2 LINE L2 0 3313 2997 1897 122 16 7 chr11 12454150 12454441 -138329112 + L1MB5 LINE L1 5254 5550 -624 2541 113 13 5 chr11 12454441 12454813 -138328740 + THE1C LTR MaLR 1 375 0 9604 130 37 40 chr11 12454813 12456393 -138327160 + THE1C-int LTR MaLR 1 1575 -5 2290 150 16 11 chr11 12456396 12456769 -138326784 + THE1C LTR MaLR 1 375 0 2886 179 69 14 chr11 12456770 12457362 -138326191 + L1MB5 LINE L1 5542 6166 -8 21 0 0 0 chr11 12457559 12457580 -138325973 + AT_rich Low_complexity Low_complexity 1 21 0 309 332 83 5 chr11 12457589 12457794 -138325759 + MIR SINE MIR 30 250 -12 3065 223 55 64 chr11 12457816 12458618 -138324935 - MER21B LTR ERV1 -60 803 9 3083 121 47 25 chr11 12458783 12459269 -138324284 - LOR1a LTR ERV1 0 497 1 3479 174 20 0 chr11 12459675 12460268 -138323285 - LTR31 LTR ERV1 0 619 15 1242 238 20 16 chr11 12461068 12461371 -138322182 + MER31B LTR ERV1 1 304 -162 2553 123 65 5 chr11 12461372 12461787 -138321766 + MER83 LTR ERV1 1 440 -8 923 195 11 16 chr11 12461788 12461978 -138321575 + MER31A LTR ERV1 297 485 0 2489 115 69 20 chr11 12462882 12463290 -138320263 + MSTA LTR MaLR 1 428 0 189 0 0 0 chr11 12463354 12463375 -138320178 + (TG)n Simple_repeat Simple_repeat 2 22 0 195 371 41 0 chr11 12463468 12463565 -138319988 - MER5B DNA MER1_type 0 178 78 1188 164 93 22 chr11 12464891 12465160 -138318393 - MER33 DNA MER1_type -36 288 1 255 294 37 0 chr11 12465230 12465339 -138318214 + L1ME LINE L1 5593 5705 -2103 383 314 114 11 chr11 12465349 12465524 -138318029 + MIR SINE MIR 20 212 -50 228 268 0 0 chr11 12465580 12465636 -138317917 + L1ME LINE L1 5736 5791 -330 218 340 87 0 chr11 12465641 12465744 -138317809 + L2 LINE L2 3199 3310 -3 12809 216 36 14 chr11 12465798 12469482 -138314071 + L1PA13 LINE L1 1085 4841 -1956 1216 214 33 17 chr11 12469457 12469756 -138313797 + L1PA15 LINE L1 3891 4194 -2603 * 6325 101 11 12 chr11 12469763 12471741 -138311812 + L1PA15 LINE L1 4830 6808 -8 473 179 28 28 chr11 12471749 12471855 -138311698 + L1M3 LINE L1 5406 5511 -660 2209 137 27 36 chr11 12471858 12472223 -138311330 - THE1B LTR MaLR -2 362 1 11254 98 13 12 chr11 12472226 12473253 -138310300 - THE1B-int LTR MaLR -28 1552 521 2035 135 37 0 chr11 12473253 12473550 -138310003 + AluSg SINE Alu 1 308 -2 11254 98 13 12 chr11 12473550 12474066 -138309487 - THE1B-int LTR MaLR -1059 521 7 2092 148 36 41 chr11 12474077 12474441 -138309112 - THE1B LTR MaLR 0 364 3 537 190 0 0 chr11 12474443 12474543 -138309010 + L1M3 LINE L1 5507 5606 -565 182 320 20 46 chr11 12475602 12475755 -138307798 + MIR SINE MIR 68 216 -46 361 244 13 0 chr11 12475924 12476002 -138307551 + MIR3 SINE MIR 83 161 -47 450 104 0 0 chr11 12476157 12476224 -138307329 - MER41B LTR ERV1 -86 549 483 1692 192 7 7 chr11 12477379 12477681 -138305872 + AluJo SINE Alu 1 302 -10 2066 141 6 13 chr11 12477681 12477994 -138305559 + AluJo SINE Alu 1 311 -1 888 128 32 166 chr11 12477999 12478272 -138305281 - MER33 DNA MER1_type -89 274 1 692 159 7 0 chr11 12478294 12478432 -138305121 + (CA)n Simple_repeat Simple_repeat 1 139 0 1769 139 157 16 chr11 12478488 12478863 -138304690 + MSTA LTR MaLR 1 428 0 200 306 81 18 chr11 12478866 12478977 -138304576 - L2 LINE L2 -190 3082 2965 382 289 0 0 chr11 12479038 12479121 -138304432 + MER58 DNA MER1_type 4 86 -255 620 202 0 0 chr11 12479121 12479235 -138304318 - AluJb SINE Alu -22 290 177 922 152 64 59 chr11 12480235 12480313 -138303240 - MER3 DNA MER1_type -2 207 131 1744 163 27 7 chr11 12480313 12480614 -138302939 + AluJb SINE Alu 5 311 -1 922 152 64 59 chr11 12480614 12480739 -138302814 - MER3 DNA MER1_type -78 131 3 427 260 10 0 chr11 12480912 12481016 -138302537 - MER8 DNA MER2_type -134 105 1 395 280 73 13 chr11 12481017 12481167 -138302386 + MIR SINE MIR 76 234 -28 2234 85 48 3 chr11 12482138 12482433 -138301120 + AluSg SINE Alu 1 308 -2 263 279 0 13 chr11 12482506 12482585 -138300968 + (CA)n Simple_repeat Simple_repeat 1 78 0 880 209 51 5 chr11 12483756 12483970 -138299583 + MIR SINE MIR 40 261 -1 1557 166 53 28 chr11 12483983 12484267 -138299286 - AluJo SINE Alu -21 291 1 500 219 27 20 chr11 12484309 12484394 -138299159 - L2 LINE L2 -4 3309 3221 2022 178 53 59 chr11 12484394 12484901 -138298652 + MLT1D LTR MaLR 1 504 -1 500 219 27 20 chr11 12484901 12484961 -138298592 - L2 LINE L2 -92 3221 3163 296 222 0 0 chr11 12486092 12486146 -138297407 + MER91 DNA MER1_type 127 180 -10 287 282 99 28 chr11 12486441 12486583 -138296970 + L1ME LINE L1 5600 5751 -370 2514 116 7 52 chr11 12486766 12487204 -138296349 - L1MA9 LINE L1 -3 6309 5892 1106 141 134 119 chr11 12487204 12487352 -138296201 + MER2 DNA MER2_type 16 160 -185 2217 132 0 0 chr11 12487352 12487662 -138295891 - AluSx SINE Alu -2 310 1 1106 141 134 119 chr11 12487662 12487833 -138295720 + MER2 DNA MER2_type 160 340 -5 575 92 0 0 chr11 12487841 12487917 -138295636 - L1MA9 LINE L1 -398 5902 5827 470 295 0 7 chr11 12487964 12488103 -138295450 - LTR16C LTR ERVL 0 491 354 878 187 7 0 chr11 12488107 12488257 -138295296 + FRAM SINE Alu 1 146 -30 528 254 146 9 chr11 12488474 12488687 -138294866 - Tigger8 DNA MER2_type -174 492 251 757 172 8 0 chr11 12488689 12488811 -138294742 + FLAM_A SINE Alu 1 123 -10 763 238 81 0 chr11 12488908 12489068 -138294485 - MIR SINE MIR -75 187 15 350 321 46 0 chr11 12489084 12489193 -138294360 - Tigger8 DNA MER2_type -518 148 35 2154 148 97 8 chr11 12489469 12489860 -138293693 + MSTA LTR MaLR 3 428 0 302 176 44 29 chr11 12490241 12490309 -138293244 - MLT1G LTR MaLR 0 590 522 802 156 38 59 chr11 12490409 12490595 -138292958 - MER53 DNA DNA -7 182 1 666 285 65 43 chr11 12490745 12491022 -138292531 - MLT1H1 LTR MaLR -272 283 1 31 26 0 0 chr11 12491281 12491319 -138292234 + AT_rich Low_complexity Low_complexity 1 38 0 1511 133 17 4 chr11 12491466 12491699 -138291854 - AluSx SINE Alu -75 237 2 1502 179 78 38 chr11 12491835 12491987 -138291566 + MLT1A1 LTR MaLR 5 149 -216 1893 146 3 3 chr11 12491987 12492288 -138291265 + AluJb SINE Alu 1 301 -11 1502 179 78 38 chr11 12492288 12492416 -138291137 + MLT1A1 LTR MaLR 149 304 -61 2067 119 0 0 chr11 12492416 12492710 -138290843 + AluSx SINE Alu 1 294 -18 1502 179 78 38 chr11 12492710 12492775 -138290778 + MLT1A1 LTR MaLR 304 365 0 351 286 124 0 chr11 12492811 12492916 -138290637 - L2 LINE L2 -13 3300 3183 418 214 0 0 chr11 12493537 12493621 -138289932 + MER103 DNA DNA 75 158 -8 1719 206 79 12 chr11 12493635 12494066 -138289487 + MLT1C LTR MaLR 6 465 -2 327 277 40 33 chr11 12494120 12494283 -138289270 - MIR SINE MIR -62 146 9 869 220 165 20 chr11 12494747 12495002 -138288551 + AluSg SINE Alu 1 292 -8 1576 167 7 7 chr11 12495011 12495298 -138288255 - AluJb SINE Alu -25 287 1 296 290 72 83 chr11 12495542 12495818 -138287735 - L1ME4a LINE L1 -244 5877 5605 1850 158 0 13 chr11 12495821 12496119 -138287434 - AluJb SINE Alu -18 294 1 2862 168 33 58 chr11 12496130 12497035 -138286518 - L1MB8 LINE L1 -2 6176 5217 1918 135 13 7 chr11 12497035 12497339 -138286214 - AluSx SINE Alu -6 306 1 2862 168 33 58 chr11 12497339 12497557 -138285996 - L1MB8 LINE L1 -961 5217 4995 1148 168 0 5 chr11 12497574 12497590 -138285963 + AluJb SINE Alu 118 133 -179 1597 132 48 44 chr11 12497590 12497885 -138285668 + AluSg SINE Alu 5 300 -10 1148 168 0 5 chr11 12497885 12498064 -138285489 + AluJb SINE Alu 133 312 0 1791 246 118 33 chr11 12498149 12498693 -138284860 - MLT1F1 LTR MaLR -2 565 2 287 199 80 119 chr11 12498748 12498899 -138284654 + MER5B DNA MER1_type 33 177 -1 198 0 0 0 chr11 12499718 12499740 -138283813 + (T)n Simple_repeat Simple_repeat 1 22 0 211 361 0 14 chr11 12499802 12499874 -138283679 + L2 LINE L2 3123 3193 -79 180 344 185 13 chr11 12500108 12500416 -138283137 - L3 LINE CR1 -114 1463 1103 2332 88 0 0 chr11 12500845 12501152 -138282401 + AluSg SINE Alu 1 307 -3 232 189 38 5 chr11 12502610 12502671 -138280882 + MIR SINE MIR 106 167 -41 510 313 53 31 chr11 12503066 12503293 -138280260 + MIR SINE MIR 19 250 -12 2128 102 7 10 chr11 12504379 12504682 -138278871 - AluSc SINE Alu -7 302 1 415 309 196 21 chr11 12504713 12505004 -138278549 - MLT1J2 LTR MaLR 0 450 109 2104 179 116 15 chr11 12505154 12505612 -138277941 + MLT1D LTR MaLR 1 504 -1 240 267 0 78 chr11 12506025 12506115 -138277438 + MIR SINE MIR 6 88 -174 1031 254 124 54 chr11 12506121 12506440 -138277113 - MLT1G1 LTR MaLR -1 578 219 774 162 0 22 chr11 12506440 12506576 -138276977 + FLAM_C SINE Alu 1 133 0 1031 254 124 54 chr11 12506576 12506812 -138276741 - MLT1G1 LTR MaLR -360 219 1 216 291 201 0 chr11 12506812 12506946 -138276607 + MIR SINE MIR 91 251 -11 203 321 0 37 chr11 12506939 12507020 -138276533 + L2 LINE L2 3199 3276 -37 * 1015 218 137 79 chr11 12507054 12507573 -138275980 - MLT1H LTR MaLR 0 549 1 305 279 89 32 chr11 12507718 12507876 -138275677 - MLT1L LTR MaLR -52 563 397 257 266 0 0 chr11 12507937 12508001 -138275552 - MLT1L LTR MaLR -343 272 209 1866 186 55 50 chr11 12508030 12508486 -138275067 - MLT1C LTR MaLR -5 462 5 183 129 0 0 chr11 12508562 12508593 -138274960 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 210 256 97 120 chr11 12509829 12509925 -138273628 + L2 LINE L2 2626 2723 -549 942 220 204 27 chr11 12509925 12510366 -138273187 + LTR33 LTR ERVL 3 521 0 210 256 97 120 chr11 12510366 12510421 -138273132 + L2 LINE L2 2723 2778 -494 1934 127 0 13 chr11 12510421 12510721 -138272832 + AluSq SINE Alu 1 296 -17 210 256 97 120 chr11 12510721 12510935 -138272618 + L2 LINE L2 2778 2981 -291 5915 101 7 1 chr11 12510955 12511785 -138271768 - L1PA10 LINE L1 -2 6166 5332 1655 132 18 0 chr11 12511784 12512065 -138271488 + L1PA10 LINE L1 5055 5340 -806 * 222 91 0 0 chr11 12512151 12512184 -138271369 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 13765 28 2 0 chr11 12513003 12515382 -138268171 - L1PA4 LINE L1 0 6155 3773 304 272 68 20 chr11 12515961 12516108 -138267445 + MLT1K LTR MaLR 402 555 -33 1424 237 27 29 chr11 12516479 12516892 -138266661 + L1ME3A LINE L1 5545 5956 -214 233 290 57 80 chr11 12516965 12517028 -138266525 + L1ME3A LINE L1 5988 6051 -119 2216 91 0 7 chr11 12517028 12517325 -138266228 - AluSx SINE Alu -17 295 1 233 290 57 80 chr11 12517325 12517437 -138266116 + L1ME3A LINE L1 6051 6159 -11 192 294 0 0 chr11 12517993 12518044 -138265509 + L2 LINE L2 3201 3251 -21 265 351 61 7 chr11 12519512 12519660 -138263893 + MIR3 SINE MIR 3 158 -50 988 156 18 6 chr11 12520060 12520227 -138263326 - FRAM SINE Alu -8 168 1 1652 200 74 56 chr11 12520259 12520719 -138262834 + MLT1H LTR MaLR 1 531 -24 1048 222 151 67 chr11 12520721 12521270 -138262283 - MLT1G1 LTR MaLR 0 595 1 236 203 0 81 chr11 12521456 12521530 -138262023 + MER117 DNA MER1_type 96 163 -34 1904 94 23 0 chr11 12521935 12522191 -138261362 + L1PA10 LINE L1 5905 6166 -2 650 119 0 10 chr11 12522850 12522951 -138260602 + AluSg/x SINE Alu 202 301 -9 1610 168 0 4 chr11 12523336 12523598 -138259955 - AluSx SINE Alu -49 263 3 267 312 0 11 chr11 12524003 12524096 -138259457 + CT-rich Low_complexity Low_complexity 5 96 0 206 125 0 25 chr11 12524098 12524138 -138259415 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 299 243 28 103 chr11 12524189 12524296 -138259257 + MIR SINE MIR 49 146 -62 300 298 81 0 chr11 12524897 12525021 -138258532 + MER117 DNA MER1_type 9 142 -55 342 318 109 22 chr11 12525233 12525554 -138257999 + L1M4 LINE L1 4504 4852 -1294 909 150 0 0 chr11 12525891 12526024 -138257529 + FLAM_C SINE Alu 1 133 0 935 90 0 0 chr11 12526621 12526743 -138256810 + AluSg SINE Alu 1 122 -188 303 109 87 0 chr11 12526767 12526905 -138256648 + (TA)n Simple_repeat Simple_repeat 1 150 0 1165 140 5 0 chr11 12526910 12527096 -138256457 + AluSq SINE Alu 127 313 0 602 289 7 0 chr11 12528178 12528330 -138255223 - MIR SINE MIR -25 237 85 237 273 203 75 chr11 12528448 12528635 -138254918 - L2 LINE L2 0 3272 3062 592 222 105 6 chr11 12528641 12528803 -138254750 - MER5B DNA MER1_type 0 178 1 2888 123 27 7 chr11 12528893 12529342 -138254211 - LTR32 LTR ERVL 0 471 14 566 295 134 42 chr11 12529358 12529761 -138253792 - MLT1K LTR MaLR -61 527 88 183 260 82 41 chr11 12529843 12529916 -138253637 - L2 LINE L2 -568 2746 2671 1723 151 7 7 chr11 12529926 12530218 -138253335 - AluSx SINE Alu -7 305 14 324 194 58 87 chr11 12530247 12530350 -138253203 + AluJ/FLAM SINE Alu 1 61 -241 890 164 7 7 chr11 12530466 12530618 -138252935 + FRAM SINE Alu 1 146 -30 270 339 194 25 chr11 12530623 12531138 -138252415 - L2 LINE L2 -685 2629 2202 1620 161 33 13 chr11 12531138 12531443 -138252110 + AluJb SINE Alu 1 311 -1 270 339 194 25 chr11 12531443 12531671 -138251882 - L2 LINE L2 -1112 2202 1761 741 129 26 0 chr11 12531833 12531949 -138251604 + L1MB5 LINE L1 5948 6066 -108 355 90 62 0 chr11 12531972 12532030 -138251523 + L1MB5 LINE L1 6042 6103 -71 1723 144 41 0 chr11 12532033 12532324 -138251229 - AluSx SINE Alu 0 302 1 389 311 135 7 chr11 12532326 12532474 -138251079 - MIR SINE MIR -80 182 16 426 268 143 12 chr11 12533677 12533845 -138249708 + MIR SINE MIR 13 202 -60 1423 280 101 21 chr11 12533890 12534384 -138249169 - MLT2F LTR ERVL 0 663 109 2164 116 0 0 chr11 12534384 12534686 -138248867 + AluSx SINE Alu 1 302 -10 1423 280 101 21 chr11 12534686 12534805 -138248748 - MLT2F LTR ERVL -554 109 1 256 253 11 66 chr11 12535480 12535571 -138247982 - L2 LINE L2 -1 3271 3186 1256 259 72 42 chr11 12535623 12536051 -138247502 - LTR16C LTR ERVL 0 491 51 600 299 148 15 chr11 12536090 12536428 -138247125 + MLT1K LTR MaLR 32 414 -174 358 291 0 0 chr11 12536845 12536931 -138246622 + L2 LINE L2 3227 3312 -1 370 308 64 19 chr11 12537141 12537297 -138246256 + MIR SINE MIR 2 164 -98 624 237 79 0 chr11 12537486 12537625 -138245928 - MIR SINE MIR -107 155 6 2398 115 0 0 chr11 12539225 12539562 -138243991 - AluSq SINE Alu 0 337 1 315 122 0 0 chr11 12539605 12539654 -138243899 + (TCCC)n Simple_repeat Simple_repeat 3 51 0 2296 124 3 10 chr11 12539656 12539970 -138243583 - AluSx SINE Alu 0 312 1 240 163 0 0 chr11 12540627 12540670 -138242883 + CT-rich Low_complexity Low_complexity 2 44 0 1403 132 5 10 chr11 12540686 12540890 -138242663 - AluSx SINE Alu -107 205 3 601 251 86 11 chr11 12541315 12541502 -138242051 + MIR SINE MIR 10 210 -52 252 278 82 0 chr11 12541916 12542013 -138241540 - L2 LINE L2 -9 3263 3159 405 253 163 25 chr11 12544174 12544376 -138239177 - MIR SINE MIR -13 249 20 264 167 11 133 chr11 12545420 12545471 -138238082 - MIR SINE MIR -113 149 112 649 174 7 43 chr11 12545471 12545609 -138237944 + FLAM_C SINE Alu 1 133 0 264 167 11 133 chr11 12545609 12545647 -138237906 - MIR SINE MIR -150 112 71 1520 144 86 16 chr11 12545744 12546057 -138237496 + MER44D DNA MER2_type 3 607 -2 314 285 62 73 chr11 12546269 12546637 -138236916 - L1MC5 LINE L1 -41 7920 7557 855 188 8 0 chr11 12547692 12547825 -138235728 - AluJo SINE Alu -178 134 1 2303 96 13 7 chr11 12548181 12548484 -138235069 - AluY SINE Alu -6 305 1 234 0 0 0 chr11 12548558 12548584 -138234969 + (T)n Simple_repeat Simple_repeat 1 26 0 230 287 185 13 chr11 12550913 12551070 -138232483 + MIR SINE MIR 79 262 0 220 242 51 56 chr11 12551977 12552150 -138231403 - MIR3 SINE MIR 0 208 60 479 286 26 26 chr11 12554323 12554477 -138229076 + MIR SINE MIR 81 234 -28 2176 118 10 3 chr11 12554619 12554915 -138228638 - AluSx SINE Alu -14 298 1 335 310 0 10 chr11 12555150 12555250 -138228303 - L3 LINE CR1 -224 1353 1255 2217 234 96 10 chr11 12555257 12555937 -138227616 - HsTC2a DNA Tc2 -5 739 2 794 312 199 13 chr11 12555938 12556547 -138227006 - L3 LINE CR1 -319 1258 537 2307 80 0 7 chr11 12557470 12557759 -138225794 - AluSg SINE Alu -22 288 2 316 352 83 10 chr11 12557818 12558011 -138225542 + L1MC4a LINE L1 5870 6076 -1732 274 197 79 40 chr11 12558778 12558854 -138224699 - L2 LINE L2 -7 3265 3187 21 0 0 0 chr11 12558911 12558932 -138224621 + AT_rich Low_complexity Low_complexity 1 21 0 666 226 52 87 chr11 12559515 12559803 -138223750 - L2 LINE L2 0 3313 3036 510 259 20 27 chr11 12560080 12560227 -138223326 + MIR SINE MIR 108 253 -9 487 263 143 0 chr11 12560507 12560682 -138222871 - MIR SINE MIR -14 248 49 647 224 154 20 chr11 12560957 12561158 -138222395 + MIR SINE MIR 35 262 0 22 35 0 0 chr11 12561171 12561200 -138222353 + AT_rich Low_complexity Low_complexity 1 29 0 363 250 29 19 chr11 12561542 12561646 -138221907 - MIR SINE MIR -67 195 91 210 143 0 0 chr11 12561828 12561863 -138221690 + (T)n Simple_repeat Simple_repeat 1 35 0 1894 145 0 17 chr11 12561922 12562218 -138221335 - AluJo SINE Alu -19 293 3 2957 13 0 0 chr11 12563219 12563532 -138220021 + AluYb8 SINE Alu 1 313 -5 569 275 47 28 chr11 12563943 12564154 -138219399 + MIR SINE MIR 48 262 0 387 331 98 11 chr11 12564119 12564303 -138219250 - MIR SINE MIR -16 246 47 * 2264 114 13 0 chr11 12565281 12565589 -138217964 - AluSx SINE Alu 0 312 1 411 263 41 53 chr11 12566251 12566422 -138217131 + MIR SINE MIR 76 244 -18 316 217 0 0 chr11 12566854 12566923 -138216630 - MLT1K LTR MaLR -2 586 518 580 208 33 0 chr11 12566927 12567047 -138216506 + AluJo SINE Alu 13 136 -176 782 180 180 5 chr11 12567448 12567659 -138215894 - MIR SINE MIR -1 261 14 750 292 16 24 chr11 12567673 12567923 -138215630 - MIR SINE MIR -1 261 14 304 185 31 0 chr11 12568166 12568231 -138215322 - L2 LINE L2 0 3272 3206 398 301 76 59 chr11 12568458 12568694 -138214859 + MIR SINE MIR 3 242 -20 246 213 0 113 chr11 12568757 12568837 -138214716 - MIR3 SINE MIR -25 183 113 210 37 0 0 chr11 12569804 12569831 -138213722 + (TG)n Simple_repeat Simple_repeat 1 27 0 202 291 38 113 chr11 12570813 12571026 -138212527 + L2 LINE L2 3076 3272 0 233 336 52 15 chr11 12571267 12571401 -138212152 - MIR3 SINE MIR -41 167 29 336 282 118 20 chr11 12572431 12572626 -138210927 - MIR3 SINE MIR -46 216 3 223 220 0 0 chr11 12572647 12572697 -138210856 + L2 LINE L2 3263 3312 -1 326 323 27 48 chr11 12573386 12573572 -138209981 + MIR3 SINE MIR 5 186 -22 551 264 73 28 chr11 12574130 12574308 -138209245 - MIR3 SINE MIR -6 202 17 460 301 150 10 chr11 12574870 12575063 -138208490 - MIR SINE MIR -20 242 23 334 351 140 30 chr11 12575140 12575476 -138208077 - L2 LINE L2 -14 3258 2886 237 65 0 0 chr11 12576139 12576170 -138207383 + (GA)n Simple_repeat Simple_repeat 1 31 0 7060 45 7 0 chr11 12578218 12579431 -138204122 + L1PA5 LINE L1 4936 6154 0 289 216 81 0 chr11 12579531 12579605 -138203948 - L2 LINE L2 0 3272 3193 255 247 91 0 chr11 12579910 12579987 -138203566 + L2 LINE L2 3188 3271 -1 243 361 82 25 chr11 12580000 12580158 -138203395 - MER5B DNA MER1_type -1 177 11 631 253 19 0 chr11 12581099 12581257 -138202296 - MIR SINE MIR -74 188 28 485 337 93 51 chr11 12581296 12582075 -138201478 - L2 LINE L2 -257 3015 2205 279 319 58 5 chr11 12582166 12582354 -138201199 - L2 LINE L2 -1366 1948 1751 628 162 43 0 chr11 12582545 12582662 -138200891 + AluJb SINE Alu 188 309 -3 783 315 72 17 chr11 12583675 12584024 -138199529 - MLT1J2 LTR MaLR 0 450 83 2186 118 3 31 chr11 12584214 12584536 -138199017 + AluSq SINE Alu 1 313 0 1031 143 54 93 chr11 12585193 12585235 -138198318 - L1MB3 LINE L1 -9 6174 6132 1890 151 3 32 chr11 12585235 12585547 -138198006 - AluJo SINE Alu -9 303 1 1031 143 54 93 chr11 12585547 12585655 -138197898 - L1MB3 LINE L1 -51 6132 6036 1803 106 0 0 chr11 12585655 12585881 -138197672 - AluSg SINE Alu -21 289 64 1031 143 54 93 chr11 12585881 12585987 -138197566 - L1MB3 LINE L1 -147 6036 5927 767 266 104 12 chr11 12586647 12586985 -138196568 - L1ME4a LINE L1 -10 6111 5743 237 361 62 8 chr11 12587105 12587235 -138196318 + MIR SINE MIR 16 154 -54 21 57 0 0 chr11 12587460 12587495 -138196058 + AT_rich Low_complexity Low_complexity 1 35 0 231 232 0 0 chr11 12587505 12587561 -138195992 + (CA)n Simple_repeat Simple_repeat 1 56 0 214 254 0 34 chr11 12587564 12587623 -138195930 + (CATATA)n Simple_repeat Simple_repeat 5 61 0 570 196 12 24 chr11 12587626 12587794 -138195759 + (CATA)n Simple_repeat Simple_repeat 2 167 0 299 305 195 11 chr11 12590053 12590227 -138193326 - MIR SINE MIR -36 226 21 1238 152 39 17 chr11 12590243 12590474 -138193079 + MER46A DNA MER2_type 1 236 0 1114 171 5 14 chr11 12590864 12591075 -138192478 + AluSx SINE Alu 3 211 -101 219 186 0 0 chr11 12591084 12591127 -138192426 + GA-rich Low_complexity Low_complexity 2 44 0 533 190 0 10 chr11 12591786 12591886 -138191667 + AluJb SINE Alu 2 100 -212 279 290 83 59 chr11 12592990 12593159 -138190394 - MIR SINE MIR -12 250 78 1027 285 72 42 chr11 12593388 12593816 -138189737 + LTR16C LTR ERVL 51 491 0 218 275 11 66 chr11 12593868 12593959 -138189594 + L2 LINE L2 3186 3271 -1 520 252 87 0 chr11 12596506 12596633 -138186920 + MIR SINE MIR 18 155 -107 374 308 64 19 chr11 12596822 12596978 -138186575 - MIR SINE MIR -98 164 2 306 309 0 0 chr11 12597188 12597272 -138186281 - L2 LINE L2 -1 3312 3229 237 65 0 0 chr11 12598045 12598076 -138185477 + (GA)n Simple_repeat Simple_repeat 1 31 0 683 295 68 0 chr11 12598566 12598773 -138184780 + L2 LINE L2 3093 3313 0 277 339 161 0 chr11 12598977 12599107 -138184446 + L2 LINE L2 3105 3255 -17 2058 111 3 46 chr11 12600245 12600569 -138182984 + AluSq SINE Alu 1 310 -3 513 272 12 58 chr11 12600725 12600898 -138182655 + MIR SINE MIR 42 206 -56 1107 181 5 0 chr11 12601032 12601242 -138182311 + AluJb SINE Alu 92 302 -10 369 265 58 155 chr11 12601407 12601698 -138181855 + L2 LINE L2 2985 3247 -25 540 205 26 8 chr11 12602611 12602728 -138180825 + L1MB5 LINE L1 5948 6066 -108 259 157 59 0 chr11 12602756 12602807 -138180746 + L1MB7 LINE L1 6049 6102 -82 1313 176 40 15 chr11 12602812 12603105 -138180448 - AluSx SINE Alu 0 302 3 404 309 128 7 chr11 12603109 12603258 -138180295 - MIR SINE MIR -80 182 16 384 312 32 25 chr11 12604612 12604769 -138178784 + MIR SINE MIR 81 238 -24 336 206 41 14 chr11 12604919 12604992 -138178561 - AluSg/x SINE Alu -15 285 211 360 115 0 33 chr11 12605093 12605154 -138178399 + Alu SINE Alu 242 300 0 243 242 32 89 chr11 12605601 12605725 -138177828 + MLT1K LTR MaLR 411 527 -61 2336 183 27 7 chr11 12605741 12606190 -138177363 + LTR32 LTR ERVL 14 471 0 344 286 110 13 chr11 12606287 12606441 -138177112 + MER5B DNA MER1_type 8 176 -2 1191 197 32 12 chr11 12606570 12606819 -138176734 + MER61B LTR ERV1 172 425 0 243 273 124 8 chr11 12606947 12607068 -138176485 + LTR16A LTR ERVL 316 450 0 414 242 11 11 chr11 12607074 12607169 -138176384 - L2 LINE L2 -33 3280 3186 356 187 51 23 chr11 12607229 12607316 -138176237 + MLT1J LTR MaLR 239 411 -195 1140 197 87 3 chr11 12607316 12607615 -138175938 + MER33 DNA MER1_type 1 324 0 230 310 164 14 chr11 12608365 12608578 -138174975 - L1MC4a LINE L1 -1694 6114 5870 2103 87 0 7 chr11 12608637 12608926 -138174627 + AluSg SINE Alu 2 288 -22 1791 141 0 10 chr11 12610138 12610435 -138173118 + AluSx SINE Alu 2 295 -17 1315 249 27 29 chr11 12610571 12610984 -138172569 - L1ME3A LINE L1 -214 5956 5545 254 279 54 41 chr11 12611358 12611505 -138172048 - MLT1K LTR MaLR -38 550 402 771 304 77 23 chr11 12612498 12612847 -138170706 - MLT1J2 LTR MaLR 0 450 83 2083 112 3 31 chr11 12613037 12613359 -138170194 + AluSq SINE Alu 1 313 0 549 161 0 85 chr11 12614016 12614058 -138169495 - L1MB3 LINE L1 -9 6174 6130 1415 189 3 32 chr11 12614058 12614370 -138169183 - AluJo SINE Alu -9 303 1 549 161 0 85 chr11 12614370 12614457 -138169096 - L1MB3 LINE L1 -53 6130 6056 1333 140 0 18 chr11 12614478 12614707 -138168846 - AluSg/x SINE Alu -21 289 65 519 211 0 0 chr11 12614710 12614814 -138168739 - L1MB3 LINE L1 -153 6030 5927 1469 190 0 0 chr11 12615366 12615640 -138167913 + AluSx SINE Alu 3 276 -36 329 314 120 23 chr11 12616656 12616831 -138166722 + MIR SINE MIR 47 238 -24 * 496 284 53 21 chr11 12616826 12617016 -138166537 - MIR SINE MIR -19 243 48 2498 45 0 0 chr11 12617429 12617738 -138165815 - AluYb8 SINE Alu -7 311 3 524 304 179 9 chr11 12618949 12619173 -138164380 - MIR SINE MIR 0 262 1 287 281 0 0 chr11 12619529 12619586 -138163967 - L2 LINE L2 -16 3297 3241 205 205 26 0 chr11 12620379 12620418 -138163135 + L2 LINE L2 3255 3294 -19 587 304 78 0 chr11 12621066 12621270 -138162283 - MIR SINE MIR -14 248 29 914 240 86 5 chr11 12621322 12621543 -138162010 + MER8 DNA MER2_type 1 239 0 185 322 192 7 chr11 12623624 12623770 -138159783 + MIR SINE MIR 79 251 -11 520 257 22 22 chr11 12624295 12624431 -138159122 + MIR SINE MIR 16 151 -111 1522 157 39 0 chr11 12624431 12624686 -138158867 + MER2 DNA MER2_type 1 265 -80 381 271 119 46 chr11 12624824 12624975 -138158578 - MIR SINE MIR -34 228 67 1035 250 135 20 chr11 12625194 12625633 -138157920 + L2 LINE L2 2649 3036 -277 188 29 0 88 chr11 12625633 12625667 -138157886 + (CA)n Simple_repeat Simple_repeat 2 32 0 1035 250 135 20 chr11 12625667 12625691 -138157862 + L2 LINE L2 3036 3056 -257 195 42 0 0 chr11 12625691 12625715 -138157838 + (TC)n Simple_repeat Simple_repeat 1 24 0 1035 250 135 20 chr11 12625715 12625749 -138157804 + L2 LINE L2 3056 3085 -228 2151 120 0 0 chr11 12625749 12626057 -138157496 - AluSx SINE Alu -2 310 3 1035 250 135 20 chr11 12626057 12626119 -138157434 + L2 LINE L2 3085 3138 -175 1538 193 3 7 chr11 12626119 12626414 -138157139 - AluJb SINE Alu -18 294 1 1035 250 135 20 chr11 12626414 12626440 -138157113 + L2 LINE L2 3138 3313 0 2657 184 62 17 chr11 12626489 12627072 -138156481 + L1MB3 LINE L1 5568 6176 -7 644 177 14 14 chr11 12627090 12627231 -138156322 + Charlie5 DNA MER1_type 2238 2378 -234 1359 206 0 4 chr11 12627594 12627856 -138155697 + AluSx SINE Alu 3 263 -49 661 117 0 10 chr11 12628241 12628344 -138155209 - AluSg/x SINE Alu -9 301 200 1676 132 19 4 chr11 12629002 12629260 -138154293 - L1PA10 LINE L1 -2 6166 5905 236 203 0 81 chr11 12629667 12629741 -138153812 - MER117 DNA MER1_type -34 163 96 842 244 147 65 chr11 12629927 12630477 -138153076 + MLT1G1 LTR MaLR 1 595 0 804 184 81 10 chr11 12630705 12630930 -138152623 - MER61B LTR ERV1 -97 328 1 26 74 0 0 chr11 12631052 12631106 -138152447 + AT_rich Low_complexity Low_complexity 1 54 0 1461 226 33 19 chr11 12631559 12631921 -138151632 - L1MB4 LINE L1 -1 6179 5813 1399 134 61 4 chr11 12631924 12632201 -138151352 - Charlie5 DNA MER1_type -82 2530 2238 2674 174 58 28 chr11 12632207 12632805 -138150748 - L1MB3 LINE L1 0 6183 5568 248 157 135 90 chr11 12632854 12632880 -138150673 - L2 LINE L2 0 3313 3290 1242 235 3 3 chr11 12632880 12633174 -138150379 + AluJb SINE Alu 1 294 -18 248 157 135 90 chr11 12633174 12633236 -138150317 - L2 LINE L2 -23 3290 3221 1695 140 0 4 chr11 12633236 12633500 -138150053 + AluSq SINE Alu 3 265 -48 1049 131 0 0 chr11 12633702 12633862 -138149691 + FRAM SINE Alu 1 40 0 426 249 186 70 chr11 12634127 12634264 -138149289 - L1MC4a LINE L1 -1906 5902 5782 2050 112 0 0 chr11 12634264 12634564 -138148989 - AluSg SINE Alu 0 305 6 426 249 186 70 chr11 12634564 12634770 -138148783 - L1MC4a LINE L1 -2026 5782 5518 1695 157 3 0 chr11 12635068 12635354 -138148199 + AluJb SINE Alu 16 302 -10 435 253 58 154 chr11 12635519 12635811 -138147742 + L2 LINE L2 2985 3248 -24 1281 174 87 3 chr11 12636659 12636958 -138146595 - MER33 DNA MER1_type 0 324 1 356 187 51 23 chr11 12636958 12637045 -138146508 - MLT1J LTR MaLR -195 316 239 437 232 11 11 chr11 12637104 12637199 -138146354 + L2 LINE L2 3186 3280 -33 293 273 116 0 chr11 12637205 12637326 -138146227 - LTR16A LTR ERVL 0 450 316 738 159 8 8 chr11 12637454 12637580 -138145973 - MER61A LTR ERV1 0 343 218 934 235 25 42 chr11 12638201 12638361 -138145192 - MIR SINE MIR -25 237 81 1733 151 10 7 chr11 12638361 12638653 -138144900 + AluJb SINE Alu 6 298 -14 934 235 25 42 chr11 12638653 12638730 -138144823 - MIR SINE MIR -181 81 4 271 301 160 0 chr11 12639972 12640100 -138143453 - MIR SINE MIR -67 141 2 447 245 10 0 chr11 12640172 12640274 -138143279 - Charlie4a DNA MER1_type 0 508 406 988 188 35 99 chr11 12640299 12640581 -138142972 - Charlie4a DNA MER1_type -206 302 39 2208 111 3 49 chr11 12641192 12641517 -138142036 + AluSq SINE Alu 1 310 -3 512 272 12 58 chr11 12641674 12641847 -138141706 + MIR SINE MIR 42 206 -56 267 367 85 19 chr11 12642208 12642467 -138141086 - L2 LINE L2 -1303 2011 1736 1061 107 0 0 chr11 12643570 12643710 -138139843 + AluJb SINE Alu 156 295 -17 2560 107 43 36 chr11 12643729 12644168 -138139385 + MER4D LTR ERV1 457 898 -5 946 192 93 10 chr11 12644186 12644516 -138139037 - MER21B LTR ERV1 -467 396 3 209 228 0 35 chr11 12644529 12644586 -138138967 - L2 LINE L2 -1034 2280 2226 4385 157 27 29 chr11 12644746 12645947 -138137606 + L1MB3 LINE L1 4958 6157 -26 327 270 35 61 chr11 12646010 12646125 -138137428 - MIR SINE MIR -34 228 117 356 204 86 0 chr11 12646422 12646515 -138137038 + L2 LINE L2 2693 2793 -521 498 181 0 0 chr11 12646654 12646759 -138136794 + (TGGA)n Simple_repeat Simple_repeat 4 108 0 192 250 0 0 chr11 12646768 12646804 -138136749 - L2 LINE L2 -46 3267 3232 183 80 0 0 chr11 12647747 12647772 -138135781 + (T)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr11 12648025 12648054 -138135499 + AT_rich Low_complexity Low_complexity 1 29 0 226 214 0 0 chr11 12648114 12648156 -138135397 + MIR SINE MIR 110 151 -111 241 268 12 24 chr11 12648607 12648689 -138134864 + CT-rich Low_complexity Low_complexity 2 82 0 1336 167 53 17 chr11 12649553 12649852 -138133701 + MER33 DNA MER1_type 5 314 -10 1015 195 14 32 chr11 12649852 12650073 -138133480 + MER20 DNA MER1_type 1 217 -2 544 238 107 42 chr11 12650199 12650367 -138133186 + MIR SINE MIR 84 262 0 221 0 35 0 chr11 12650790 12650819 -138132734 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 248 356 70 0 chr11 12650819 12650934 -138132619 + L2 LINE L2 3150 3272 0 440 302 68 29 chr11 12652224 12652429 -138131124 + MIR SINE MIR 12 224 -38 180 0 0 0 chr11 12652493 12652513 -138131040 + (ATTTG)n Simple_repeat Simple_repeat 3 22 0 677 291 73 45 chr11 12652518 12652676 -138130877 - L2 LINE L2 -4 3309 3157 2284 108 0 23 chr11 12652676 12652981 -138130572 + AluSx SINE Alu 1 298 -14 677 291 73 45 chr11 12652981 12652994 -138130559 - L2 LINE L2 -156 3157 3146 2079 126 0 11 chr11 12652994 12653280 -138130273 + AluJb SINE Alu 20 302 -10 677 291 73 45 chr11 12653280 12653465 -138130088 - L2 LINE L2 -167 3146 2942 191 35 0 35 chr11 12653530 12653559 -138129994 + (CCCCCA)n Simple_repeat Simple_repeat 4 31 0 303 143 36 0 chr11 12653615 12653671 -138129882 + MER58 DNA MER1_type 2348 2405 -15 2260 105 0 14 chr11 12653990 12654286 -138129267 + AluSx SINE Alu 6 297 -15 490 291 33 39 chr11 12654332 12654514 -138129039 - MIR SINE MIR -8 254 74 189 319 51 0 chr11 12655113 12655191 -138128362 + MIR SINE MIR 17 99 -109 454 315 199 19 chr11 12655191 12655407 -138128146 + MIR SINE MIR 4 258 -4 329 255 101 60 chr11 12655400 12655549 -138128004 + MIR SINE MIR 92 246 -16 * 857 242 13 17 chr11 12655778 12656009 -138127544 + AluSg SINE Alu 56 285 -25 21 0 0 0 chr11 12656009 12656030 -138127523 + AT_rich Low_complexity Low_complexity 1 21 0 323 288 73 101 chr11 12656043 12656331 -138127222 + L1MC4a LINE L1 5775 6054 -1754 1127 131 0 0 chr11 12656430 12656590 -138126963 - FRAM SINE Alu 0 40 1 366 263 0 0 chr11 12656754 12656868 -138126685 + (TA)n Simple_repeat Simple_repeat 1 114 0 696 173 27 11 chr11 12656868 12657258 -138126295 + (TG)n Simple_repeat Simple_repeat 1 396 0 745 203 0 0 chr11 12657258 12657386 -138126167 - FLAM_C SINE Alu -14 129 2 752 255 10 25 chr11 12658690 12658886 -138124667 - MIR SINE MIR -1 261 69 269 250 0 0 chr11 12658885 12658941 -138124612 + L2 LINE L2 3256 3311 -2 * 257 303 20 10 chr11 12659141 12659240 -138124313 + MIR3 SINE MIR 96 195 -13 194 271 21 0 chr11 12659718 12659766 -138123787 + L2 LINE L2 3217 3265 -7 2411 98 0 13 chr11 12660238 12660554 -138122999 - AluSx SINE Alu 0 312 1 274 268 303 7 chr11 12662548 12662690 -138120863 + MIR SINE MIR 77 260 -2 21 0 0 0 chr11 12665838 12665859 -138117694 + AT_rich Low_complexity Low_complexity 1 21 0 1651 151 56 40 chr11 12666319 12666623 -138116930 + AluJo SINE Alu 1 309 -3 328 259 100 118 chr11 12666652 12666872 -138116681 + L1MC4 LINE L1 7826 8041 -1 1981 279 132 9 chr11 12667091 12667932 -138115621 - L2 LINE L2 -338 2976 2033 188 132 0 26 chr11 12668130 12668168 -138115385 + (TC)n Simple_repeat Simple_repeat 1 37 0 403 328 54 12 chr11 12668552 12668776 -138114777 + MIR SINE MIR 30 262 0 201 171 0 0 chr11 12668777 12668812 -138114741 + (TTA)n Simple_repeat Simple_repeat 2 36 0 557 269 130 23 chr11 12669475 12669691 -138113862 + MIR SINE MIR 14 252 -10 329 292 10 10 chr11 12670384 12670480 -138113073 + MIR SINE MIR 19 114 -148 617 230 93 0 chr11 12670506 12670645 -138112908 + MIR SINE MIR 89 240 -22 223 333 13 0 chr11 12671407 12671485 -138112068 - L2 LINE L2 -9 3304 3226 2351 91 0 10 chr11 12673176 12673474 -138110079 + AluSp SINE Alu 1 295 -18 931 254 45 0 chr11 12673662 12673882 -138109671 + MIR SINE MIR 28 257 -5 239 376 32 38 chr11 12673902 12674059 -138109494 + L2 LINE L2 3031 3186 -86 4227 166 62 8 chr11 12674125 12675212 -138108341 - L1MB7 LINE L1 0 6184 5034 195 258 146 30 chr11 12675220 12675355 -138108198 - MIR3 SINE MIR -75 133 2 211 325 0 36 chr11 12675361 12675444 -138108109 + L2 LINE L2 3193 3272 0 534 290 0 8 chr11 12675977 12676108 -138107445 + L2 LINE L2 3143 3272 0 196 236 18 18 chr11 12676318 12676373 -138107180 - L2 LINE L2 -557 2757 2703 1265 191 86 0 chr11 12676657 12676877 -138106676 - MER8 DNA MER2_type 0 239 1 648 294 78 0 chr11 12676929 12677133 -138106420 + MIR SINE MIR 29 248 -14 205 205 26 0 chr11 12677782 12677821 -138105732 - L2 LINE L2 -19 3294 3255 241 150 0 0 chr11 12679102 12679142 -138104411 - L2 LINE L2 -2 3270 3231 609 326 26 0 chr11 12680252 12680442 -138103111 - MIR SINE MIR -34 228 34 271 226 108 29 chr11 12681247 12681349 -138102204 - MIR SINE MIR -144 118 9 926 209 22 6 chr11 12681579 12681761 -138101792 + MER5A DNA MER1_type 5 189 0 216 0 0 0 chr11 12682338 12682362 -138101191 + (TG)n Simple_repeat Simple_repeat 1 24 0 796 228 179 8 chr11 12682364 12682632 -138100921 - MER58B DNA MER1_type -27 314 1 735 280 68 0 chr11 12683006 12683213 -138100340 + L2 LINE L2 3093 3313 0 257 323 141 0 chr11 12683447 12683546 -138100007 + L2 LINE L2 3143 3255 -17 996 97 18 24 chr11 12684441 12684606 -138098947 + MLT1C LTR MaLR 28 191 -276 216 0 0 0 chr11 12684684 12684708 -138098845 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1071 174 9 43 chr11 12684710 12684940 -138098613 - AluJb SINE Alu -31 281 60 1957 152 30 3 chr11 12684992 12685322 -138098231 + LTR32 LTR ERVL 14 352 -119 804 166 26 7 chr11 12685367 12685518 -138098035 + LTR32 LTR ERVL 318 471 0 2399 97 0 3 chr11 12685777 12686088 -138097465 - AluSx SINE Alu -2 310 1 831 239 44 5 chr11 12686186 12686391 -138097162 + MER20 DNA MER1_type 7 219 0 181 282 26 51 chr11 12687181 12687259 -138096294 + MIR SINE MIR 184 259 -3 269 263 33 25 chr11 12687283 12687401 -138096152 - MIR SINE MIR -50 212 94 222 291 254 0 chr11 12689275 12689385 -138094168 - MIR SINE MIR 0 262 125 265 188 0 0 chr11 12789385 12789433 -137994120 - Alu SINE Alu -260 48 1 2253 94 17 0 chr11 12790022 12790321 -137993232 - AluSq SINE Alu -9 304 1 825 192 94 86 chr11 12790584 12790829 -137992724 + MIR SINE MIR 2 248 -14 203 204 19 19 chr11 12790829 12790883 -137992670 + (CATAC)n Simple_repeat Simple_repeat 5 58 0 217 0 0 0 chr11 12791595 12791619 -137991934 + (TTTTC)n Simple_repeat Simple_repeat 2 180 0 2059 134 0 0 chr11 12791619 12791902 -137991651 - AluSx SINE Alu -29 283 1 618 85 0 0 chr11 12794484 12794578 -137988975 + (TC)n Simple_repeat Simple_repeat 1 94 0 213 39 0 0 chr11 12795475 12795501 -137988052 + (T)n Simple_repeat Simple_repeat 1 26 0 475 318 62 26 chr11 12795650 12795845 -137987708 - MIR SINE MIR -14 248 47 388 336 7 0 chr11 12796216 12796353 -137987200 - MIR SINE MIR -13 249 112 738 133 0 0 chr11 12796454 12796559 -137986994 - AluSq/x SINE Alu -207 106 2 434 265 10 10 chr11 12796560 12796658 -137986895 - MER2 DNA MER2_type -247 98 1 * 595 191 0 0 chr11 12796658 12796772 -137986781 + MER2 DNA MER2_type 97 210 -135 24 32 0 0 chr11 12796782 12796813 -137986740 + AT_rich Low_complexity Low_complexity 1 31 0 289 247 24 47 chr11 12796926 12797011 -137986542 - L2 LINE L2 0 3272 3190 274 310 139 53 chr11 12797606 12797887 -137985666 - L2 LINE L2 -13 3259 2955 373 277 233 15 chr11 12797940 12798142 -137985411 + MIR SINE MIR 5 250 -12 1113 311 181 30 chr11 12798159 12799279 -137984274 - L3 LINE CR1 -5 1572 284 2296 67 6 35 chr11 12799285 12799600 -137983953 - AluY SINE Alu 0 311 6 18982 67 13 1 chr11 12799700 12802336 -137981217 - L1P2 LINE L1 -608 5546 2882 469 271 33 0 chr11 12804110 12804232 -137979321 - L2 LINE L2 0 3313 3188 325 329 30 18 chr11 12804557 12804721 -137978832 + MIR SINE MIR 94 259 -3 370 288 55 43 chr11 12804843 12805006 -137978547 - MIR SINE MIR -50 212 48 1969 148 7 0 chr11 12805028 12805331 -137978222 + AluSx SINE Alu 2 306 -6 304 194 0 30 chr11 12805376 12805443 -137978110 + MER44D DNA MER2_type 1 65 -640 22273 39 3 0 chr11 12805543 12808222 -137975331 - L1P LINE L1 -2836 3310 623 768 55 0 0 chr11 12808220 12808311 -137975242 - L1P LINE L1 -6048 98 8 * 417 222 0 0 chr11 12808315 12808387 -137975166 + MER2 DNA MER2_type 274 345 0 1358 282 75 26 chr11 12808387 12809080 -137974473 + L1ME3 LINE L1 5225 5954 -208 417 39 0 0 chr11 12809856 12809907 -137973646 - L1P LINE L1 -2352 3794 3744 2283 110 0 0 chr11 12810036 12810335 -137973218 + AluSg SINE Alu 1 299 -11 18154 128 19 16 chr11 12810345 12812646 -137970907 + L1PA4 LINE L1 13 2324 -3822 216 0 0 0 chr11 12812646 12812670 -137970883 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 18154 128 19 16 chr11 12812670 12813230 -137970323 + L1PA4 LINE L1 2324 2881 -3265 17734 36 3 4 chr11 12813330 12816111 -137967442 + L1PA4 LINE L1 3370 6152 -3 1793 171 3 0 chr11 12816127 12816414 -137967139 - MER2 DNA MER2_type -57 288 1 367 299 17 0 chr11 12816488 12816626 -137966927 - L1M4 LINE L1 -1100 5046 4906 1260 258 60 30 chr11 12816740 12817306 -137966247 - L1M4 LINE L1 -1704 4442 3860 614 260 54 31 chr11 12817777 12818046 -137965507 + LTR40c LTR ERVL 154 464 -55 469 275 133 33 chr11 12818726 12818937 -137964616 - MIR SINE MIR -10 252 21 2289 90 3 3 chr11 12820744 12821034 -137962519 - AluSq SINE Alu -15 298 9 396 218 178 0 chr11 12821149 12821250 -137962303 + MER119 DNA MER1_type 3 121 -462 776 167 0 22 chr11 12821255 12821393 -137962160 + MER119 DNA MER1_type 448 582 -1 234 259 36 144 chr11 12821395 12821534 -137962019 + L2 LINE L2 3149 3272 0 2386 74 3 16 chr11 12822136 12822448 -137961105 + AluY SINE Alu 1 308 -3 2056 126 10 7 chr11 12823304 12823598 -137959955 + AluSx SINE Alu 1 295 -17 371 270 70 0 chr11 12823789 12823889 -137959664 - MIR SINE MIR -107 155 49 238 150 17 17 chr11 12825320 12825380 -137958173 + GA-rich Low_complexity Low_complexity 1 60 0 485 302 161 0 chr11 12826496 12826688 -137956865 + MIR SINE MIR 28 250 -12 22 0 0 0 chr11 12827298 12827320 -137956233 + AT_rich Low_complexity Low_complexity 1 22 0 351 328 65 32 chr11 12827342 12827589 -137955964 - MIR SINE MIR -7 255 1 898 179 25 46 chr11 12828155 12828351 -137955202 - MER3 DNA MER1_type -4 205 14 2212 129 0 0 chr11 12829610 12829919 -137953634 - AluSx SINE Alu -3 309 1 1979 142 43 58 chr11 12829946 12830340 -137953213 - MLT1B LTR MaLR 0 390 3 267 114 0 0 chr11 12831933 12831968 -137951585 + U2 snRNA snRNA 1 35 -153 351 266 32 40 chr11 12832173 12832297 -137951256 + MIR SINE MIR 59 181 -81 504 278 31 41 chr11 12832420 12832614 -137950939 + MIR SINE MIR 59 250 -12 490 308 55 103 chr11 12832647 12833014 -137950539 - L2 LINE L2 -8 3264 2916 303 247 181 24 chr11 12835274 12835440 -137948113 + MIR SINE MIR 71 262 0 2225 112 3 0 chr11 12835739 12836034 -137947519 - AluSx SINE Alu -16 296 1 1530 266 54 37 chr11 12836085 12837278 -137946275 + L1MEc LINE L1 46 4627 -1588 * 2224 214 44 118 chr11 12837264 12838094 -137945459 + L1M4 LINE L1 2132 2904 -3242 272 114 0 0 chr11 12838094 12838129 -137945424 - Alu SINE Alu -15 286 252 2224 214 44 118 chr11 12838129 12838332 -137945221 + L1M4 LINE L1 2904 3120 -3026 1421 266 54 76 chr11 12838304 12838759 -137944794 + L1MEc LINE L1 1479 1943 -4272 * 2405 63 0 26 chr11 12838759 12839062 -137944491 + AluY SINE Alu 1 295 -16 1421 266 54 76 chr11 12839062 12840098 -137943455 + L1MEc LINE L1 1943 2893 -3322 3411 138 28 32 chr11 12840119 12840356 -137943197 + MER39B LTR ERV1 48 284 -369 2374 66 3 10 chr11 12840356 12840660 -137942893 - AluY SINE Alu -9 302 1 3411 138 28 32 chr11 12840660 12841022 -137942531 + MER39B LTR ERV1 284 645 -8 1583 257 82 51 chr11 12841030 12841839 -137941714 + L1MEc LINE L1 2929 3773 -2442 1817 116 31 57 chr11 12841839 12842115 -137941438 + AluSg SINE Alu 1 269 -41 252 0 0 0 chr11 12842115 12842143 -137941410 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1817 116 31 57 chr11 12842143 12842184 -137941369 + AluSg SINE Alu 269 310 0 1583 257 82 51 chr11 12842184 12842331 -137941222 + L1MEc LINE L1 3773 3914 -2301 * 6965 137 21 20 chr11 12842313 12844256 -137939297 + L1MA4 LINE L1 4179 6120 -249 1415 273 71 50 chr11 12844356 12846417 -137937136 - L1MC/D LINE L1 -748 5398 3694 23 33 0 0 chr11 12846901 12846931 -137936622 + AT_rich Low_complexity Low_complexity 1 30 0 1559 230 24 60 chr11 12847116 12847384 -137936169 - L1ME3 LINE L1 -2 6160 5884 2208 175 80 95 chr11 12847384 12847461 -137936092 + MLT1E1 LTR MaLR 1 78 -576 2058 139 3 0 chr11 12847461 12847755 -137935798 + AluSq SINE Alu 1 295 -18 2208 175 80 95 chr11 12847755 12848341 -137935212 + MLT1E1 LTR MaLR 78 654 0 1559 230 24 60 chr11 12848341 12848383 -137935170 - L1ME3 LINE L1 -278 5884 5842 2809 68 3 3 chr11 12848383 12848738 -137934815 - THE1A LTR MaLR 0 355 1 1559 230 24 60 chr11 12848738 12848960 -137934593 - L1ME3 LINE L1 -320 5842 5646 3240 188 6 30 chr11 12848960 12849593 -137933960 - MER67B LTR ERV1 0 661 44 480 167 48 0 chr11 12849627 12849711 -137933842 - MER67A LTR ERV1 -446 97 10 1352 218 30 52 chr11 12849716 12850121 -137933432 - L1ME3 LINE L1 -513 5649 5237 598 206 110 19 chr11 12850121 12850276 -137933277 - FAM SINE Alu -6 169 1 1352 218 30 52 chr11 12850276 12850319 -137933234 - L1ME3 LINE L1 -925 5237 5195 1898 137 70 20 chr11 12850319 12850676 -137932877 - THE1C LTR MaLR 0 375 1 1352 218 30 52 chr11 12850676 12850752 -137932801 - L1ME3 LINE L1 -967 5195 5054 1020 105 105 6 chr11 12850767 12850948 -137932605 + Charlie5 DNA MER1_type 1 199 -2413 511 222 0 0 chr11 12850947 12851055 -137932498 + Charlie5 DNA MER1_type 2352 2459 -153 * 567 200 77 7 chr11 12851081 12851236 -137932317 - L1M4 LINE L1 -743 5403 5238 1232 203 34 0 chr11 12851236 12851502 -137932051 + AluJo SINE Alu 33 307 -5 553 113 99 28 chr11 12851502 12851644 -137931909 + Charlie5 DNA MER1_type 2473 2624 0 1171 245 70 45 chr11 12851648 12851797 -137931756 - L1M4 LINE L1 -1107 5039 4895 2281 90 0 14 chr11 12851797 12852086 -137931467 + AluSp SINE Alu 1 285 -28 513 0 0 0 chr11 12852086 12852143 -137931410 + (CA)n Simple_repeat Simple_repeat 2 58 0 1171 245 70 45 chr11 12852143 12852478 -137931075 - L1M4 LINE L1 -1250 4896 4542 1747 153 55 15 chr11 12852478 12852551 -137931002 - MER44D DNA MER2_type -1882 609 540 1815 147 50 68 chr11 12852551 12852933 -137930620 - THE1C LTR MaLR 0 375 1 1747 153 55 15 chr11 12852933 12853185 -137930368 - MER44D DNA MER2_type -1951 540 1 361 222 99 19 chr11 12853189 12853351 -137930202 - L1M4 LINE L1 -1607 4539 4365 232 286 12 0 chr11 12853363 12853447 -137930106 - L1ME3 LINE L1 -1588 4558 4474 422 178 147 84 chr11 12853517 12853708 -137929845 - L1ME3A LINE L1 -20 6150 5948 261 294 49 35 chr11 12853721 12853864 -137929689 - L1ME3A LINE L1 -289 5881 5737 4752 212 52 26 chr11 12853901 12855326 -137928227 - L1ME1 LINE L1 -2 6164 4664 1949 147 10 32 chr11 12855326 12855638 -137927915 - AluJo SINE Alu -7 305 1 4752 212 52 26 chr11 12855638 12856440 -137927113 - L1ME1 LINE L1 -1502 4664 3884 1412 204 87 45 chr11 12857960 12858406 -137925147 - MLT1C LTR MaLR -2 465 1 1135 173 27 32 chr11 12858497 12858717 -137924836 + MER20 DNA MER1_type 1 219 0 2262 111 10 0 chr11 12858976 12859273 -137924280 - AluSx SINE Alu -12 300 1 247 345 110 45 chr11 12859438 12859638 -137923915 - L2 LINE L2 -15 3257 3045 950 268 59 13 chr11 12859835 12860141 -137923412 - LTR16B LTR ERVL -4 460 141 2203 99 20 0 chr11 12861380 12861674 -137921879 + AluSq SINE Alu 1 300 -13 1005 141 53 12 chr11 12861674 12861844 -137921709 + AluSg/x SINE Alu 134 310 -2 237 228 0 0 chr11 12862868 12862925 -137920628 - MIR SINE MIR -118 144 88 2258 109 0 3 chr11 12864742 12865046 -137918507 + AluSg SINE Alu 1 303 -7 206 237 0 0 chr11 12867266 12867304 -137916249 + polypyrimidine Low_complexity Low_complexity 2 39 0 1725 144 3 80 chr11 12869234 12869547 -137914006 - AluJb SINE Alu -23 289 1 1707 218 73 18 chr11 12869552 12870080 -137913473 - L1ME3A LINE L1 -8 6162 5582 295 313 80 18 chr11 12870084 12870196 -137913357 - MIR SINE MIR -62 146 28 751 195 133 17 chr11 12870639 12870822 -137912731 - MER5C DNA MER1_type -55 269 50 3965 83 0 12 chr11 12870822 12871339 -137912214 + MER9 LTR ERVK 1 511 0 751 195 133 17 chr11 12871339 12871396 -137912157 - MER5C DNA MER1_type -274 50 1 1258 202 132 60 chr11 12871506 12871977 -137911576 + MER110A LTR ERV1 11 491 0 441 273 60 33 chr11 12872242 12872392 -137911161 + MER5A DNA MER1_type 36 189 0 311 253 13 13 chr11 12872399 12872474 -137911079 - MIR SINE MIR -55 153 79 21 0 0 0 chr11 12872716 12872737 -137910816 + AT_rich Low_complexity Low_complexity 1 21 0 210 91 0 0 chr11 12874080 12874113 -137909440 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 27 62 0 0 chr11 12874471 12874519 -137909034 + GC_rich Low_complexity Low_complexity 1 48 0 24 96 0 0 chr11 12874660 12874733 -137908820 + GC_rich Low_complexity Low_complexity 1 73 0 186 43 0 0 chr11 12875182 12875205 -137908348 + (T)n Simple_repeat Simple_repeat 1 23 0 945 189 87 33 chr11 12875358 12875443 -137908110 - L1MA4 LINE L1 -5 6295 6216 4229 78 5 7 chr11 12875443 12875994 -137907559 - MER41A LTR ERV1 -4 550 1 945 189 87 33 chr11 12875994 12876183 -137907370 - L1MA4 LINE L1 -84 6216 6006 809 282 95 37 chr11 12876669 12876772 -137906781 - L3 LINE CR1 -323 1254 1158 1061 262 84 25 chr11 12876772 12877261 -137906292 - LTR33 LTR ERVL -1 520 3 809 282 95 37 chr11 12877261 12877622 -137905931 - L3 LINE CR1 -419 1158 763 1436 146 75 4 chr11 12878125 12878365 -137905188 - Tigger2 DNA MER2_type -1 2717 2461 4487 139 23 18 chr11 12878410 12879149 -137904404 - Tigger2 DNA MER2_type -1974 744 2 601 284 57 9 chr11 12879300 12879511 -137904042 + MIR SINE MIR 16 236 -26 370 158 0 0 chr11 12880281 12880338 -137903215 - FLAM SINE Alu -8 125 69 * 812 186 18 6 chr11 12880335 12880502 -137903051 - Tigger2 DNA MER2_type -2545 173 5 1291 273 39 57 chr11 12880946 12881665 -137901888 - L2 LINE L2 -1 3312 2610 1891 149 27 0 chr11 12881665 12881960 -137901593 + AluJo SINE Alu 1 303 -9 1291 273 39 57 chr11 12881960 12882171 -137901382 - L2 LINE L2 -703 2610 2397 1180 204 59 65 chr11 12882179 12882517 -137901036 - MER58B DNA MER1_type -2 339 4 424 360 40 26 chr11 12882834 12883137 -137900416 + L2 LINE L2 2818 3124 -148 411 305 31 0 chr11 12883269 12883397 -137900156 + MIR3 SINE MIR 68 199 -9 196 333 0 14 chr11 12883975 12884044 -137899509 + L2 LINE L2 3202 3269 -3 195 42 0 0 chr11 12884165 12884189 -137899364 + (TG)n Simple_repeat Simple_repeat 2 25 0 224 270 70 20 chr11 12885758 12885858 -137897695 - L2 LINE L2 0 3313 3209 201 193 333 0 chr11 12885952 12886009 -137897544 - L2 LINE L2 -17 3296 3221 343 251 31 68 chr11 12886067 12886230 -137897323 - MER103 DNA DNA -3 163 7 2164 128 14 0 chr11 12886798 12887095 -137896458 + AluSx SINE Alu 1 301 -11 394 292 0 17 chr11 12887181 12887301 -137896252 + L1ME LINE L1 5547 5664 -457 906 236 136 30 chr11 12888204 12888569 -137894984 + L2 LINE L2 2287 2708 -606 1788 149 66 0 chr11 12888569 12888857 -137894696 - AluSx SINE Alu -5 307 1 906 236 136 30 chr11 12888857 12888931 -137894622 + L2 LINE L2 2708 2773 -541 398 228 55 39 chr11 12888909 12889036 -137894517 + L2 LINE L2 3182 3310 -3 * 2352 66 3 26 chr11 12889674 12889978 -137893575 + AluY SINE Alu 1 297 -14 420 238 94 44 chr11 12891221 12891635 -137891918 + LTR33A LTR ERVL 1 515 -8 311 260 10 10 chr11 12891705 12891801 -137891752 + MIR SINE MIR 63 158 -104 228 314 58 64 chr11 12893305 12893461 -137890092 + L2 LINE L2 3076 3230 -42 250 254 14 70 chr11 12893883 12894025 -137889528 - MLT1H LTR MaLR -397 152 19 603 291 11 0 chr11 12894129 12894304 -137889249 + MIR SINE MIR 86 262 0 455 278 80 48 chr11 12894816 12895129 -137888424 - L2 LINE L2 -1389 1925 1603 3398 256 51 32 chr11 12895263 12896661 -137886892 - L2 LINE L2 -4 3309 1877 633 227 33 0 chr11 12897228 12897378 -137886175 + MIR SINE MIR 108 262 0 298 288 63 9 chr11 12897574 12897685 -137885868 + MER5A DNA MER1_type 4 120 -69 247 339 126 30 chr11 12897696 12897926 -137885627 - L2 LINE L2 -22 3291 3040 915 240 155 63 chr11 12897949 12898440 -137885113 - MLT1H LTR MaLR -13 536 1 217 329 116 5 chr11 12898440 12898656 -137884897 - L2 LINE L2 -228 3044 2805 3650 126 55 7 chr11 12898693 12899313 -137884240 - Tigger3(Golem) DNA MER2_type 0 3029 2380 922 229 14 9 chr11 12899304 12899514 -137884039 - Tigger3(Golem) DNA MER2_type -2818 211 1 * 205 271 59 59 chr11 12899527 12899645 -137883908 - L2 LINE L2 -575 2739 2622 1164 269 142 40 chr11 12899678 12900352 -137883201 - L2 LINE L2 -801 2513 1771 235 182 0 0 chr11 12900415 12900459 -137883094 - MIR SINE MIR -84 124 81 450 284 0 14 chr11 12900484 12900625 -137882928 - MLT1K LTR MaLR -5 583 445 1879 166 17 64 chr11 12901341 12901750 -137881803 - MLT1B LTR MaLR 0 390 1 180 307 173 31 chr11 12902567 12902694 -137880859 - MIR SINE MIR -1 261 117 993 203 22 0 chr11 12904310 12904552 -137879001 + L1MB3 LINE L1 5652 5902 -269 592 148 12 86 chr11 12904556 12904718 -137878835 + L1MB3 LINE L1 6034 6183 0 184 297 54 68 chr11 12904838 12904986 -137878567 + MER5A DNA MER1_type 22 167 -22 * 331 288 22 29 chr11 12904872 12905011 -137878542 - MER5A DNA MER1_type -44 145 8 3966 120 14 72 chr11 12905864 12906598 -137876955 - LTR8 LTR ERV1 0 691 1 294 277 0 24 chr11 12907376 12907459 -137876094 + (TATG)n Simple_repeat Simple_repeat 3 83 0 1765 145 38 21 chr11 12907553 12907842 -137875711 + AluJb SINE Alu 2 295 -17 219 346 0 58 chr11 12908363 12908467 -137875086 - MIR3 SINE MIR 0 208 111 411 155 0 0 chr11 12908541 12908625 -137874928 + (CA)n Simple_repeat Simple_repeat 2 85 0 284 284 55 9 chr11 12909548 12909657 -137873896 + L2 LINE L2 3200 3313 0 2238 144 0 0 chr11 12910521 12910833 -137872720 - AluSx SINE Alu 0 312 1 296 286 125 0 chr11 12910849 12910961 -137872592 - MIR SINE MIR -66 196 71 196 128 21 21 chr11 12912276 12912323 -137871230 + GA-rich Low_complexity Low_complexity 2 48 0 257 277 0 0 chr11 12913151 12913216 -137870337 + CT-rich Low_complexity Low_complexity 4 68 0 302 330 28 0 chr11 12913705 12913814 -137869739 - L2 LINE L2 0 3313 3202 396 0 0 0 chr11 12915762 12915806 -137867747 + (TCC)n Simple_repeat Simple_repeat 3 46 0 2256 141 0 0 chr11 12916100 12916404 -137867149 - AluSx SINE Alu -8 304 1 594 140 9 26 chr11 12916404 12916518 -137867035 - AluJo SINE Alu -2 310 199 945 175 7 0 chr11 12916518 12916661 -137866892 - AluJo SINE Alu -168 144 1 26 50 0 0 chr11 12916968 12917008 -137866545 + AT_rich Low_complexity Low_complexity 1 40 0 1094 287 74 13 chr11 12921739 12922268 -137861285 + L1ME4a LINE L1 5559 6119 -2 591 151 0 59 chr11 12923170 12923289 -137860264 + MER21B LTR ERV1 356 467 -396 965 268 16 0 chr11 12923595 12923841 -137859712 - MIR SINE MIR -11 251 2 1089 162 126 41 chr11 12925932 12926153 -137857400 + L1MB3 LINE L1 5889 6139 -44 2409 105 3 0 chr11 12926153 12926459 -137857094 + AluSp SINE Alu 1 307 -6 1089 162 126 41 chr11 12926459 12926508 -137857045 + L1MB3 LINE L1 6139 6182 -1 257 353 26 0 chr11 12926611 12926727 -137856826 - MIR SINE MIR -60 148 30 295 322 82 13 chr11 12926962 12927144 -137856409 + MIR SINE MIR 41 241 -21 386 242 0 32 chr11 12927169 12927264 -137856289 + MER21B LTR ERV1 1 92 -771 1899 231 58 9 chr11 12927264 12927709 -137855844 + MER21B LTR ERV1 43 509 -354 303 232 0 3 chr11 12927705 12927777 -137855776 - MER21B LTR ERV1 -298 633 497 * 22 0 0 0 chr11 12929766 12929788 -137853765 + AT_rich Low_complexity Low_complexity 1 22 0 356 248 73 0 chr11 12930094 12930203 -137853350 - MER5C DNA MER1_type 0 324 208 201 244 0 0 chr11 12930269 12930314 -137853239 - MER5C DNA MER1_type -279 45 1 259 327 9 0 chr11 12930765 12930851 -137852702 + MIR SINE MIR 86 151 -57 993 62 0 0 chr11 12930926 12931055 -137852498 + L1MA1 LINE L1 6174 6302 0 310 276 123 18 chr11 12931949 12932112 -137851441 - MIR SINE MIR -33 229 50 412 329 27 7 chr11 12932220 12932366 -137851187 - MIR SINE MIR -44 218 70 278 53 0 0 chr11 12933823 12933861 -137849692 - MIR SINE MIR -135 127 90 478 268 43 70 chr11 12934277 12934576 -137848977 + L2 LINE L2 3017 3307 -6 936 168 0 37 chr11 12934578 12934739 -137848814 + FRAM SINE Alu 8 162 -14 217 250 92 0 chr11 12935625 12935701 -137847852 - MIR SINE MIR -67 141 59 199 310 216 9 chr11 12936368 12936484 -137847069 + L2 LINE L2 2647 2786 -528 254 286 14 0 chr11 12936947 12937017 -137846536 + L2 LINE L2 3200 3270 -2 219 330 0 10 chr11 12939264 12939364 -137844189 + MER5A DNA MER1_type 13 111 -78 560 203 35 35 chr11 12939371 12939514 -137844039 - MER5B DNA MER1_type -3 175 33 1072 164 58 10 chr11 12941419 12941626 -137841927 + MER58A DNA MER1_type 8 224 0 447 284 124 0 chr11 12942111 12942280 -137841273 + MIR SINE MIR 29 218 -44 2385 187 69 4 chr11 12942456 12942965 -137840588 - L1MD3 LINE L1 0 7995 7454 437 226 20 0 chr11 12943523 12943625 -137839928 - MER5A DNA MER1_type -77 112 9 217 220 85 0 chr11 12944896 12944955 -137838598 - MIR SINE MIR -149 113 50 448 254 7 63 chr11 12945805 12945947 -137837606 - MER94 DNA DNA 0 134 1 370 340 38 6 chr11 12948028 12948187 -137835366 + MIR SINE MIR 49 212 -50 534 206 0 0 chr11 12948208 12948305 -137835248 - Tigger7 DNA MER2_type 0 2587 2491 392 179 30 0 chr11 12948303 12948370 -137835183 - Tigger7 DNA MER2_type -466 267 199 * 228 250 0 0 chr11 12951238 12951302 -137832251 + L2 LINE L2 2219 2282 -1032 1361 130 77 38 chr11 12951471 12951732 -137831821 - L1MB8 LINE L1 0 6178 5908 1357 144 52 45 chr11 12951775 12951887 -137831666 - L1MB8 LINE L1 -252 5926 5816 2378 94 0 0 chr11 12951887 12952185 -137831368 - AluSx SINE Alu -10 302 5 1357 144 52 45 chr11 12952185 12952363 -137831190 - L1MB8 LINE L1 -362 5816 5634 282 56 0 0 chr11 12952665 12952701 -137830852 + (A)n Simple_repeat Simple_repeat 1 36 0 616 238 23 35 chr11 12952821 12952993 -137830560 - MIR SINE MIR -7 255 86 1312 255 115 15 chr11 12953000 12953392 -137830161 - MLT1J2 LTR MaLR 0 450 20 300 182 30 0 chr11 12953406 12953472 -137830081 - MIR SINE MIR -177 85 18 752 271 19 5 chr11 12953627 12953834 -137829719 - MIR SINE MIR 0 262 53 1057 214 36 62 chr11 12953943 12954310 -137829243 + L1MC5 LINE L1 7555 7913 -48 1187 209 4 59 chr11 12954310 12954430 -137829123 + MER8 DNA MER2_type 1 101 -138 2229 114 3 0 chr11 12954430 12954736 -137828817 + AluSq SINE Alu 1 307 -6 1187 209 4 59 chr11 12954736 12954868 -137828685 + MER8 DNA MER2_type 101 239 0 1057 214 36 62 chr11 12954868 12954888 -137828665 + L1MC5 LINE L1 7913 7932 -29 598 244 114 15 chr11 12955655 12955856 -137827697 - MIR SINE MIR -31 231 11 668 263 83 0 chr11 12956052 12956257 -137827296 + MIR SINE MIR 28 249 -13 260 112 101 0 chr11 12956511 12956600 -137826953 + CT-rich Low_complexity Low_complexity 2 99 0 462 315 79 5 chr11 12956822 12956851 -137826702 - L1MC/D LINE L1 -2031 5777 5752 756 199 0 0 chr11 12956851 12956982 -137826571 - FLAM_A SINE Alu -2 131 1 462 315 79 5 chr11 12956982 12957155 -137826398 - L1MC/D LINE L1 -2056 5752 5560 2338 100 0 0 chr11 12957765 12958065 -137825488 + AluSx SINE Alu 1 300 -12 198 0 0 0 chr11 12958633 12958655 -137824898 + (A)n Simple_repeat Simple_repeat 1 22 0 284 192 0 0 chr11 12958800 12958857 -137824696 - L1MD3 LINE L1 -507 7488 7345 355 143 0 0 chr11 12958958 12959007 -137824546 + Charlie3 DNA MER1_type 2654 2702 -8 * 884 103 63 0 chr11 12959005 12959131 -137824422 - MSTC LTR MaLR -294 134 1 4633 156 46 7 chr11 12959131 12959962 -137823591 + L1MC3 LINE L1 6122 6984 -801 225 108 15 154 chr11 12959976 12960041 -137823512 + L1MD3 LINE L1 6986 7041 -954 2003 130 20 3 chr11 12960173 12960465 -137823088 + AluJb SINE Alu 1 297 -15 397 188 0 0 chr11 12960683 12960752 -137822801 - MIR SINE MIR 0 262 194 310 352 34 17 chr11 12960776 12961009 -137822544 - L2 LINE L2 -471 2843 2607 749 340 53 34 chr11 12961333 12961804 -137821749 + L2 LINE L2 2377 2856 -458 307 316 123 0 chr11 12961775 12961930 -137821623 + L2 LINE L2 3077 3250 -63 * 922 235 5 14 chr11 12961939 12962173 -137821380 + MIR SINE MIR 21 249 -13 188 316 0 0 chr11 12962193 12962250 -137821303 + L2 LINE L2 3255 3311 -2 5964 171 33 13 chr11 12963258 12964882 -137818671 + L1MA9 LINE L1 4653 6312 0 380 305 86 25 chr11 12965539 12965736 -137817817 + MIR SINE MIR 9 217 -45 993 261 149 0 chr11 12965740 12966096 -137817457 - LTR33 LTR ERVL 0 521 113 458 206 48 74 chr11 12966208 12966397 -137817156 + MIR SINE MIR 68 251 -11 604 315 8 25 chr11 12966940 12967100 -137816453 - MIR SINE MIR -18 244 88 2499 85 8 30 chr11 12967100 12967463 -137816090 - THE1A LTR MaLR 0 355 1 604 315 8 25 chr11 12967463 12967543 -137816010 - MIR SINE MIR -174 88 8 688 148 35 0 chr11 12968783 12968898 -137814655 - Tigger1 DNA MER2_type 0 2418 2300 1136 205 5 0 chr11 12968909 12969109 -137814444 + AluJo SINE Alu 15 215 -97 371 293 24 0 chr11 12969214 12969337 -137814216 - L1ME LINE L1 -320 5801 5676 246 263 38 0 chr11 12969418 12969498 -137814055 + MARNA DNA Mariner 480 562 -24 797 158 8 15 chr11 12969546 12969679 -137813874 + FLAM_C SINE Alu 2 133 0 384 319 99 9 chr11 12970691 12970923 -137812630 - MIR SINE MIR -8 254 2 2103 198 90 67 chr11 12971780 12972391 -137811162 + MLT1E2 LTR MaLR 2 626 0 1050 296 69 36 chr11 12972675 12973169 -137810384 - L2 LINE L2 0 3313 2804 2090 107 53 7 chr11 12974257 12974556 -137808997 + AluSq SINE Alu 1 313 0 2097 114 105 12 chr11 12974646 12974714 -137808839 - THE1B LTR MaLR 0 364 304 2406 90 0 3 chr11 12974714 12975014 -137808539 + AluSg SINE Alu 1 299 -11 2097 114 105 12 chr11 12975014 12975278 -137808275 - THE1B LTR MaLR -60 304 1 649 321 50 34 chr11 12975635 12976053 -137807500 - LTR16C LTR ERVL -2 489 65 427 226 12 0 chr11 12976199 12976283 -137807270 - MLT1D LTR MaLR -420 85 1 595 259 196 49 chr11 12976454 12976961 -137806592 + L2 LINE L2 2709 3307 -6 809 153 33 0 chr11 12978525 12978675 -137804878 - MER63 DNA MER1_type -905 156 2 1780 159 24 10 chr11 12978774 12979070 -137804483 + AluJo SINE Alu 1 300 -12 183 366 0 0 chr11 12979440 12979511 -137804042 - MIR SINE MIR -1 261 191 212 244 0 0 chr11 12979692 12979733 -137803820 + polypyrimidine Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 12980904 12980925 -137802628 + AT_rich Low_complexity Low_complexity 1 21 0 345 231 140 21 chr11 12981134 12981277 -137802276 + L2 LINE L2 2539 2698 -616 447 235 27 91 chr11 12981297 12981518 -137802035 + MIR SINE MIR 21 227 -35 568 244 47 47 chr11 12981625 12981859 -137801694 + L2 LINE L2 2836 3069 -203 915 206 5 0 chr11 12982059 12982248 -137801305 - AluJb SINE Alu 0 312 123 323 271 28 9 chr11 12982563 12982670 -137800883 - MIR SINE MIR -98 164 56 311 365 87 5 chr11 12985309 12985528 -137798025 - L2 LINE L2 -6 3266 3030 2226 177 9 21 chr11 12985908 12986305 -137797248 + L1MC3 LINE L1 7367 7760 -25 515 105 53 0 chr11 12986305 12986381 -137797172 - MADE1 DNA Mariner 0 80 1 2226 177 9 21 chr11 12986381 12986407 -137797146 + L1MC3 LINE L1 7760 7785 0 739 239 81 34 chr11 12986499 12986733 -137796820 - MIR SINE MIR 0 262 18 1289 179 79 4 chr11 12987754 12987994 -137795559 - MLT1D LTR MaLR -1 504 247 1208 288 120 23 chr11 12988183 12988742 -137794811 + MLT1L LTR MaLR 1 613 -2 269 283 54 91 chr11 12988954 12989230 -137794323 - L2 LINE L2 0 3272 3007 2317 212 67 41 chr11 12989782 12990512 -137793041 + L1ME LINE L1 4015 4763 -1383 609 229 62 10 chr11 12990497 12990689 -137792864 + L1ME LINE L1 4974 5175 -971 * 597 98 0 0 chr11 12990690 12990772 -137792781 + AluSg1 SINE Alu 2 83 -226 231 283 152 0 chr11 12991492 12991591 -137791962 + MIR SINE MIR 92 205 -57 2438 68 3 0 chr11 12992119 12992411 -137791142 - AluY SINE Alu -17 294 2 2363 92 3 3 chr11 12992418 12992721 -137790832 - AluSc SINE Alu -6 303 1 1442 156 70 12 chr11 12993685 12993941 -137789612 - AluJo SINE Alu -3 309 39 662 278 199 19 chr11 12994387 12994815 -137788738 - LTR33 LTR ERVL 0 521 17 294 314 75 17 chr11 12995390 12995629 -137787924 + L1ME LINE L1 5414 5666 -500 301 264 96 16 chr11 12996993 12997118 -137786435 + MIR SINE MIR 109 243 -19 252 0 0 0 chr11 12998231 12998259 -137785294 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1725 133 17 20 chr11 12998262 12998563 -137784990 - AluSx SINE Alu -11 301 2 1214 141 8 73 chr11 12998737 12998971 -137784582 + MER20 DNA MER1_type 1 219 0 525 180 71 156 chr11 12999058 12999271 -137784282 - MIR SINE MIR -7 255 57 300 340 19 9 chr11 12999321 12999427 -137784126 - MIR SINE MIR -50 212 106 216 325 33 50 chr11 12999463 12999583 -137783970 + L2 LINE L2 3134 3251 -21 1863 160 44 58 chr11 12999627 13000170 -137783383 - MLT2A2 LTR ERVL 0 554 1 584 226 109 105 chr11 13002526 13002765 -137780788 - MIR SINE MIR -2 260 21 458 267 42 8 chr11 13002915 13003035 -137780518 - L2 LINE L2 -1 3312 3189 271 157 39 0 chr11 13003375 13003426 -137780127 - MIR SINE MIR -92 170 118 1249 181 91 15 chr11 13003746 13004011 -137779542 - AluJo SINE Alu -14 298 14 241 272 111 0 chr11 13005199 13005280 -137778273 + MIR SINE MIR 32 121 -141 312 209 93 0 chr11 13005560 13005646 -137777907 - MER117 DNA MER1_type 0 197 104 261 266 56 18 chr11 13005950 13006073 -137777480 - MIR SINE MIR -51 157 33 314 272 99 91 chr11 13006546 13006888 -137776665 + LTR16A LTR ERVL 91 435 -15 247 215 114 13 chr11 13006985 13007064 -137776489 - MIR SINE MIR -92 116 30 572 257 37 37 chr11 13007113 13007300 -137776253 - MIR SINE MIR -56 206 20 1829 186 136 35 chr11 13007928 13008391 -137775162 + MER63 DNA MER1_type 548 1057 -4 206 81 27 0 chr11 13011464 13011501 -137772052 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 199 196 0 43 chr11 13011608 13011654 -137771899 - L3 LINE CR1 -2 1575 1532 292 300 119 31 chr11 13013652 13013760 -137769793 + MIR SINE MIR 13 141 -121 2047 100 0 23 chr11 13013760 13014097 -137769456 - AluY SINE Alu 0 311 1 292 300 119 31 chr11 13014097 13014148 -137769405 + MIR SINE MIR 141 186 -76 1507 79 5 5 chr11 13014539 13014741 -137768812 - AluY SINE Alu -109 202 1 1546 178 4 0 chr11 13015105 13015374 -137768179 - AluJo SINE Alu -37 275 6 387 259 80 18 chr11 13015541 13015653 -137767900 + L2 LINE L2 3149 3267 -5 964 243 162 65 chr11 13015792 13016303 -137767250 + MLT1L LTR MaLR 6 566 -49 378 237 134 0 chr11 13016376 13016473 -137767080 + L3 LINE CR1 1467 1576 -1 509 216 88 14 chr11 13016563 13016711 -137766842 + MIR SINE MIR 34 192 -70 198 281 124 51 chr11 13017291 13017449 -137766104 - MIR SINE MIR -55 207 23 2254 191 62 48 chr11 13018970 13019514 -137764039 - MLT2B3 LTR ERVL -2 552 1 1950 132 7 0 chr11 13019644 13019940 -137763613 - AluSx SINE Alu -14 298 1 226 266 215 27 chr11 13019973 13020119 -137763434 - MIR3 SINE MIR -77 185 13 403 289 20 60 chr11 13020651 13020800 -137762753 - MIR SINE MIR -73 189 47 1300 244 124 10 chr11 13021145 13021563 -137761990 + LTR33 LTR ERVL 14 479 -42 239 302 0 0 chr11 13021607 13021670 -137761883 - MIR SINE MIR -102 106 44 428 81 203 0 chr11 13022821 13022895 -137760658 + L1PA12 LINE L1 5863 5951 -217 753 216 105 0 chr11 13022908 13023070 -137760483 + MER3 DNA MER1_type 29 207 -2 1553 103 36 9 chr11 13023366 13023590 -137759963 + MER30 DNA MER1_type 1 230 0 514 261 38 13 chr11 13024264 13024421 -137759132 - MIR3 SINE MIR 0 208 48 265 351 92 17 chr11 13025475 13025649 -137757904 - MIR SINE MIR -24 238 52 762 148 0 22 chr11 13025810 13025945 -137757608 + AluSq/x SINE Alu 16 147 -165 574 139 178 0 chr11 13025936 13026037 -137757516 + AluSx SINE Alu 51 169 -143 * 1131 120 80 0 chr11 13026038 13026213 -137757340 + AluSg/x SINE Alu 108 296 -14 454 330 17 0 chr11 13026648 13026766 -137756787 + L2 LINE L2 3137 3256 -16 926 161 87 0 chr11 13027593 13027754 -137755799 + FAM SINE Alu 1 175 0 624 253 147 13 chr11 13028117 13028342 -137755211 + L1ME1 LINE L1 5864 6118 -48 2133 112 3 0 chr11 13028345 13028640 -137754913 - AluSx SINE Alu -16 296 1 691 219 0 0 chr11 13028847 13028975 -137754578 + FLAM_A SINE Alu 1 128 -5 2159 132 0 0 chr11 13029721 13030025 -137753528 + AluSx SINE Alu 1 304 -8 2282 248 69 23 chr11 13030417 13031071 -137752482 - MER21B LTR ERV1 -57 806 123 287 292 29 7 chr11 13031496 13031633 -137751920 - MER117 DNA MER1_type -49 148 9 520 211 41 14 chr11 13032307 13032454 -137751099 - HsTC2 DNA Tc2 -18 1880 1730 701 231 59 6 chr11 13032457 13032626 -137750927 - HsTC2 DNA Tc2 -1719 179 2 187 314 69 49 chr11 13033574 13033676 -137749877 - MIR SINE MIR -139 123 20 29 47 0 0 chr11 13033792 13033835 -137749718 + AT_rich Low_complexity Low_complexity 1 43 0 22 70 0 0 chr11 13033974 13034017 -137749536 + AT_rich Low_complexity Low_complexity 1 43 0 1931 113 10 10 chr11 13034873 13035165 -137748388 - AluSx SINE Alu -20 292 1 2120 113 10 0 chr11 13035401 13035701 -137747852 - AluSx SINE Alu -9 303 1 229 251 82 82 chr11 13035793 13036000 -137747553 - L1MC/D LINE L1 -1991 5817 5611 532 286 39 0 chr11 13036348 13036502 -137747051 - MIR SINE MIR -5 257 98 280 82 82 20 chr11 13036499 13036548 -137747005 + L2 LINE L2 3190 3241 -72 * 764 243 127 64 chr11 13036548 13037004 -137746549 - L1ME4a LINE L1 -101 6020 5536 2209 106 0 3 chr11 13037337 13037649 -137745904 + AluSx SINE Alu 1 311 -1 1929 132 7 0 chr11 13037656 13037952 -137745601 + AluSx SINE Alu 1 298 -14 377 241 8 0 chr11 13038035 13038168 -137745385 + (TA)n Simple_repeat Simple_repeat 1 134 0 352 256 12 109 chr11 13039550 13039732 -137743821 - MIR SINE MIR -61 147 18 1018 143 0 12 chr11 13040301 13040462 -137743091 + FRAM SINE Alu 1 159 -17 2050 165 104 20 chr11 13040547 13040940 -137742613 - MSTB LTR MaLR 0 426 1 204 111 0 0 chr11 13041482 13041518 -137742035 + (TG)n Simple_repeat Simple_repeat 2 37 0 1449 164 0 44 chr11 13042624 13042899 -137740654 + L1MC1 LINE L1 6066 6328 -5 180 288 14 27 chr11 13044301 13044374 -137739179 + L2 LINE L2 3002 3073 -240 453 221 96 0 chr11 13044407 13044511 -137739042 + MER94 DNA DNA 2 115 -19 282 287 56 28 chr11 13044531 13044639 -137738914 + L2 LINE L2 3141 3251 -21 255 125 0 0 chr11 13044679 13044719 -137738834 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 258 56 0 0 chr11 13044814 13044850 -137738703 + (A)n Simple_repeat Simple_repeat 1 36 0 23 33 0 0 chr11 13045789 13045819 -137737734 + AT_rich Low_complexity Low_complexity 1 30 0 324 252 104 9 chr11 13046016 13046131 -137737422 + MIR SINE MIR 8 133 -129 2103 151 0 3 chr11 13046576 13046881 -137736672 - AluJb SINE Alu -8 304 1 1539 202 76 16 chr11 13047090 13047471 -137736082 + L1MC3 LINE L1 6698 7101 -684 292 224 71 24 chr11 13047476 13047561 -137735992 + MLT1F1 LTR MaLR 45 133 -434 1590 195 117 21 chr11 13047579 13048014 -137735539 + L1MC3 LINE L1 7308 7784 -1 2356 107 3 0 chr11 13048019 13048328 -137735225 + AluSp SINE Alu 1 310 -3 2172 142 0 0 chr11 13048331 13048640 -137734913 + AluSx SINE Alu 1 309 -3 702 254 83 0 chr11 13049191 13049384 -137734169 - MER3 DNA MER1_type 0 209 1 22 35 0 0 chr11 13049492 13049521 -137734032 + AT_rich Low_complexity Low_complexity 1 29 0 1901 265 70 80 chr11 13050022 13050810 -137732743 + L1MEd LINE L1 3 797 -5513 863 154 0 22 chr11 13050810 13050946 -137732607 + FLAM_C SINE Alu 1 133 0 1901 265 70 80 chr11 13050946 13051702 -137731851 + L1MEd LINE L1 797 1559 -4751 2461 81 0 0 chr11 13051702 13052000 -137731553 + AluY SINE Alu 1 298 -13 2125 125 26 3 chr11 13052009 13052312 -137731241 + AluSx SINE Alu 1 310 -2 1901 265 70 80 chr11 13052312 13052408 -137731145 + L1MEd LINE L1 1567 1657 -4653 323 302 70 51 chr11 13052880 13052934 -137730619 + L1MEd LINE L1 2172 2223 -3906 1829 159 0 20 chr11 13052934 13053236 -137730317 - AluJo SINE Alu -16 296 1 323 302 70 51 chr11 13053236 13053552 -137730001 + L1MEd LINE L1 2223 2549 -3580 280 254 162 51 chr11 13053553 13053750 -137729803 + L1MEd LINE L1 2571 2789 -3340 215 59 0 29 chr11 13055937 13055971 -137727582 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 271 254 0 18 chr11 13056027 13056141 -137727412 + GA-rich Low_complexity Low_complexity 3 114 0 714 264 138 20 chr11 13056483 13056933 -137726620 + L1ME4a LINE L1 5617 6119 -2 237 268 20 22 chr11 13057962 13058074 -137725479 + MIR SINE MIR 33 142 -66 626 253 30 0 chr11 13058183 13058349 -137725204 - MIR SINE MIR -2 260 90 3998 158 27 4 chr11 13058450 13059151 -137724402 - L1MB2 LINE L1 -7 6164 5448 1034 242 25 0 chr11 13059990 13060230 -137723323 - MIR SINE MIR 0 262 17 27 81 0 0 chr11 13061483 13061545 -137722008 + AT_rich Low_complexity Low_complexity 1 62 0 2158 120 7 0 chr11 13061566 13061874 -137721679 - AluSx SINE Alu -2 310 1 1492 167 14 44 chr11 13061903 13062178 -137721375 - AluJb SINE Alu -12 300 34 239 239 106 14 chr11 13062292 13062434 -137721119 - L1MB2 LINE L1 -1089 5057 4903 815 182 32 82 chr11 13063166 13063386 -137720167 - MER3 DNA MER1_type 0 209 1 1023 234 87 18 chr11 13064621 13064907 -137718646 - MLT1D LTR MaLR -195 310 5 192 321 0 0 chr11 13065980 13066033 -137717520 + L2 LINE L2 3247 3299 -14 981 171 25 10 chr11 13066650 13066849 -137716704 - MIR SINE MIR -56 206 5 255 148 19 0 chr11 13067195 13067249 -137716304 - L1ME4a LINE L1 0 6121 6067 294 284 153 11 chr11 13067322 13067505 -137716048 - L1ME4a LINE L1 -188 5933 5725 1766 155 86 10 chr11 13067649 13067939 -137715614 - AluJb SINE Alu 0 312 1 256 303 70 14 chr11 13068089 13068231 -137715322 - LTR16C LTR ERVL -66 425 276 204 222 0 0 chr11 13069023 13069059 -137714494 - L2 LINE L2 -23 3290 3255 278 226 200 26 chr11 13069298 13069413 -137714140 + L2 LINE L2 3138 3272 0 246 261 49 63 chr11 13070257 13070399 -137713154 - L2 LINE L2 -157 3115 2976 220 320 55 23 chr11 13070745 13070873 -137712680 + MIR SINE MIR 125 256 -6 1972 174 166 76 chr11 13071348 13072070 -137711483 + L1MC5 LINE L1 6688 7474 -487 671 191 93 118 chr11 13072074 13072473 -137711080 + L1MC5 LINE L1 7525 7913 -48 486 242 67 19 chr11 13073580 13073785 -137709768 - L1PA8A LINE L1 -630 5501 5291 253 302 47 33 chr11 13073959 13074157 -137709396 - L1M4 LINE L1 -991 5155 4950 2611 194 115 14 chr11 13074157 13074750 -137708803 - MER82 DNA MER2_type 0 653 1 253 302 47 33 chr11 13074750 13074826 -137708727 - L1M4 LINE L1 -1196 4950 4877 1473 155 41 4 chr11 13074845 13075090 -137708463 + AluJo SINE Alu 47 300 -12 354 309 95 8 chr11 13075092 13075335 -137708218 - L1M4 LINE L1 -1408 4738 4475 692 233 88 33 chr11 13075626 13075866 -137707687 - MIR SINE MIR -8 254 2 5040 161 28 4 chr11 13075898 13076742 -137706811 + MER6 DNA MER2_type 1 865 0 306 311 59 22 chr11 13077852 13078122 -137705431 + L1ME LINE L1 5290 5569 -593 646 266 57 9 chr11 13078189 13078418 -137705135 + MIR SINE MIR 8 247 -15 282 265 15 0 chr11 13078600 13078668 -137704885 - L2 LINE L2 -20 3293 3225 268 250 0 0 chr11 13078843 13078895 -137704658 + HsTC2 DNA Tc2 34 85 -1813 238 186 0 0 chr11 13078871 13078914 -137704639 + HsTC2 DNA Tc2 1853 1895 -3 * 245 271 14 14 chr11 13079234 13079304 -137704249 - MLT1K LTR MaLR 0 588 519 255 260 47 55 chr11 13081411 13081538 -137702015 - MARNA DNA Mariner -13 573 448 324 229 0 0 chr11 13081700 13081770 -137701783 - MIR SINE MIR -105 157 88 321 249 139 11 chr11 13082311 13082483 -137701070 - MIR3 SINE MIR -65 143 1 315 224 106 0 chr11 13083851 13083936 -137699617 - L1MC4 LINE L1 -32 8010 7917 441 218 50 0 chr11 13083937 13084038 -137699515 - L1MC4 LINE L1 -190 7852 7747 389 154 0 77 chr11 13084044 13084081 -137699472 + MER116 DNA Mariner 1 31 -49 2308 97 10 3 chr11 13084081 13084391 -137699162 - AluSq SINE Alu -1 312 1 389 154 0 77 chr11 13084391 13084431 -137699122 + MER116 DNA Mariner 31 72 -8 1225 242 81 28 chr11 13084433 13084830 -137698723 - L1MC4 LINE L1 -355 7687 7270 1957 146 0 10 chr11 13085449 13085744 -137697809 - AluJb SINE Alu -20 292 1 777 262 34 42 chr11 13086299 13086562 -137696991 - MIR SINE MIR 0 262 2 1769 157 53 10 chr11 13090272 13090571 -137692982 + AluJb SINE Alu 1 312 0 304 250 141 0 chr11 13090944 13091036 -137692517 + L1ME LINE L1 5465 5569 -2426 1623 177 58 131 chr11 13091170 13091689 -137691864 + MLT1D LTR MaLR 25 505 0 302 233 256 35 chr11 13091694 13091866 -137691687 + L1ME LINE L1 5619 5828 -334 2424 76 20 0 chr11 13092019 13092323 -137691230 - AluSq SINE Alu -3 310 1 29 60 0 0 chr11 13092700 13092750 -137690803 + AT_rich Low_complexity Low_complexity 1 50 0 274 183 83 17 chr11 13093728 13093788 -137689765 - MER91B DNA MER1_type -126 64 1 298 224 106 0 chr11 13093874 13093959 -137689594 - MIR SINE MIR -117 145 52 297 289 150 57 chr11 13094401 13094830 -137688723 - L2 LINE L2 -94 3219 2755 391 275 7 120 chr11 13094831 13094973 -137688580 + MER91C DNA MER1_type 12 137 -3 982 169 10 34 chr11 13095623 13095830 -137687723 + L1PB3 LINE L1 5952 6153 -1 541 252 37 70 chr11 13096096 13096338 -137687215 - L1ME3A LINE L1 -10 6160 5927 333 207 0 0 chr11 13096873 13096960 -137686593 + GA-rich Low_complexity Low_complexity 2 88 0 500 280 48 36 chr11 13097878 13098046 -137685507 - MIR SINE MIR -5 257 88 275 111 111 0 chr11 13098083 13098137 -137685416 - L1ME3 LINE L1 -169 5993 5934 1806 152 93 60 chr11 13103148 13103510 -137680043 - Tigger2a DNA MER2_type -2274 434 54 2009 116 0 3 chr11 13103510 13103818 -137679735 + AluSg SINE Alu 1 307 0 1806 152 93 60 chr11 13103818 13103874 -137679679 - Tigger2a DNA MER2_type -2654 54 1 279 274 0 24 chr11 13205907 13205991 -137577562 - MIR SINE MIR -169 93 12 220 243 100 0 chr11 13206681 13206751 -137576802 - L2 LINE L2 -1 3312 3236 180 0 0 0 chr11 13206818 13206838 -137576715 + (A)n Simple_repeat Simple_repeat 1 20 0 2423 88 0 19 chr11 13207691 13207999 -137575554 + AluSq SINE Alu 1 302 -11 255 209 22 22 chr11 13208029 13208120 -137575433 + CT-rich Low_complexity Low_complexity 2 92 0 933 198 17 17 chr11 13208121 13208298 -137575255 - AluJb SINE Alu -18 294 118 252 326 0 0 chr11 13208923 13209020 -137574533 - MER5B DNA MER1_type 0 178 92 191 291 197 8 chr11 13208962 13209079 -137574474 + MER5A DNA MER1_type 50 188 -1 * 603 296 99 17 chr11 13209258 13209613 -137573940 + L2 LINE L2 2266 2649 -665 187 207 58 81 chr11 13209777 13209864 -137573689 + L2 LINE L2 2897 2981 -291 2017 111 25 0 chr11 13211236 13211541 -137572012 + AluSq SINE Alu 1 312 0 34 0 0 0 chr11 13211690 13211724 -137571829 + AT_rich Low_complexity Low_complexity 1 34 0 430 265 44 0 chr11 13212966 13213102 -137570451 + MIR SINE MIR 56 197 -65 478 298 69 23 chr11 13213197 13213415 -137570138 - MIR SINE MIR -27 235 8 379 161 23 35 chr11 13213475 13213562 -137569991 - L2 LINE L2 -27 3245 3160 1610 107 49 23 chr11 13214004 13214267 -137569286 - L1PA13 LINE L1 -3 6160 5891 3900 165 33 27 chr11 13215085 13216166 -137567387 + L1MD2 LINE L1 4992 5997 -245 612 277 15 15 chr11 13216289 13216491 -137567062 + MIR SINE MIR 42 243 -19 205 170 43 0 chr11 13217123 13217170 -137566383 - L2 LINE L2 -3 3269 3221 4522 218 78 26 chr11 13218001 13218262 -137565291 + L1MB8 LINE L1 4058 4304 -1880 2342 104 0 0 chr11 13218262 13218561 -137564992 - AluSq SINE Alu -11 302 4 4522 218 78 26 chr11 13218561 13219857 -137563696 + L1MB8 LINE L1 4304 5691 -493 710 157 0 0 chr11 13219877 13220023 -137563530 + FLAM_C SINE Alu 29 174 0 272 315 21 72 chr11 13220163 13220592 -137562961 + L1MB8 LINE L1 5679 6085 -93 2093 121 17 3 chr11 13221434 13221723 -137561830 - AluSx SINE Alu -19 293 1 605 211 50 39 chr11 13223487 13223667 -137559886 + MER53 DNA DNA 8 189 0 609 303 84 32 chr11 13225182 13225529 -137558024 - L3 LINE CR1 -467 1110 746 1706 143 110 10 chr11 13226119 13226427 -137557126 + MER7A DNA MER2_type 1 337 -9 1720 154 3 66 chr11 13227099 13227417 -137556136 - AluJb SINE Alu -14 298 1 315 0 0 0 chr11 13227607 13227642 -137555911 + (CA)n Simple_repeat Simple_repeat 2 36 0 2069 133 3 17 chr11 13229259 13229560 -137553993 - AluJb SINE Alu -15 297 1 192 216 0 0 chr11 13231798 13231835 -137551718 + MIR SINE MIR 118 154 -108 198 153 51 17 chr11 13232080 13232139 -137551414 + CT-rich Low_complexity Low_complexity 6 66 0 953 303 125 56 chr11 13234381 13234820 -137548733 + L1M4 LINE L1 2865 3272 -2874 342 0 0 0 chr11 13234820 13234858 -137548695 + (CA)n Simple_repeat Simple_repeat 2 39 0 953 303 125 56 chr11 13234858 13235024 -137548529 + L1M4 LINE L1 3272 3425 -2721 1528 135 39 4 chr11 13235024 13235284 -137548269 + L1MA8 LINE L1 6018 6286 -5 953 303 125 56 chr11 13235284 13235456 -137548097 + L1M4 LINE L1 3425 3584 -2562 1732 159 48 10 chr11 13235456 13235751 -137547802 + AluJb SINE Alu 5 310 -2 953 303 125 56 chr11 13235751 13236120 -137547433 + L1M4 LINE L1 3584 4093 -2053 317 295 106 39 chr11 13236248 13236739 -137546814 + L1M4 LINE L1 4402 4925 -1221 1850 153 7 19 chr11 13236886 13237193 -137546360 + AluJo SINE Alu 1 303 -9 183 42 0 0 chr11 13238473 13238497 -137545056 + (CCA)n Simple_repeat Simple_repeat 3 26 0 182 234 64 0 chr11 13238606 13238653 -137544900 + L2 LINE L2 3004 3053 -219 2451 94 0 0 chr11 13239034 13239341 -137544212 + AluSx SINE Alu 1 307 -5 2167 102 20 20 chr11 13239966 13240270 -137543283 - AluSx SINE Alu -8 304 1 1059 225 96 47 chr11 13240276 13240663 -137542890 - L1MA9 LINE L1 -25 6287 5882 476 248 50 21 chr11 13241140 13241281 -137542272 + MIR SINE MIR 42 186 -76 1996 125 3 3 chr11 13241340 13241628 -137541925 - AluSp SINE Alu -25 288 1 22 0 0 0 chr11 13242309 13242331 -137541222 + AT_rich Low_complexity Low_complexity 1 22 0 2433 84 0 0 chr11 13242963 13243262 -137540291 + AluSx SINE Alu 1 299 -13 799 295 75 87 chr11 13243583 13244346 -137539207 - HsTC2 DNA Tc2 -1025 873 121 2519 80 3 6 chr11 13244346 13244684 -137538869 - L1PA8A LINE L1 -1 6130 5794 799 295 75 87 chr11 13244684 13244804 -137538749 - HsTC2 DNA Tc2 -1777 121 1 368 139 38 6 chr11 13245051 13245126 -137538427 + Alu SINE Alu 235 295 -7 294 200 71 12 chr11 13245486 13245571 -137537982 + MER88 LTR ERVL 79 168 -296 * 1264 268 46 52 chr11 13245498 13245976 -137537577 - MER74B LTR ERVL -74 548 74 313 305 186 11 chr11 13246168 13246345 -137537208 + MIR SINE MIR 20 227 -35 215 330 153 8 chr11 13248746 13248864 -137534689 - MIR SINE MIR -108 154 20 261 246 73 64 chr11 13251748 13251858 -137531695 - MIR SINE MIR -66 142 32 425 235 11 158 chr11 13252292 13252552 -137531001 - MIR SINE MIR -28 234 13 944 262 141 93 chr11 13253159 13253961 -137529592 - HAL1 LINE L1 -68 2439 1600 260 293 80 0 chr11 13254251 13254326 -137529227 + L2 LINE L2 3197 3277 -36 407 269 35 55 chr11 13255338 13255483 -137528070 + MIR3 SINE MIR 3 144 -64 2295 95 3 0 chr11 13255849 13256144 -137527409 - AluSx SINE Alu -16 296 1 264 297 55 47 chr11 13256146 13256274 -137527279 - MIR SINE MIR -16 246 118 304 306 16 25 chr11 13257453 13257522 -137526031 + MER103 DNA DNA 2 71 -95 1511 197 14 21 chr11 13257522 13257811 -137525742 - AluJo SINE Alu -25 287 1 304 306 16 25 chr11 13257811 13257862 -137525691 + MER103 DNA DNA 71 121 -45 237 284 0 30 chr11 13257945 13258012 -137525541 - MIR SINE MIR -70 192 128 516 251 72 6 chr11 13258444 13258611 -137524942 - MER5B DNA MER1_type 0 178 1 281 209 45 0 chr11 13260526 13260593 -137522960 - MIR SINE MIR -14 248 179 1942 152 10 0 chr11 13260985 13261275 -137522278 + AluJb SINE Alu 3 295 -17 870 243 42 11 chr11 13261439 13261628 -137521925 + Charlie1a DNA MER1_type 3 197 -1258 911 193 61 10 chr11 13261698 13261895 -137521658 + Charlie1a DNA MER1_type 553 759 -696 832 174 0 19 chr11 13261895 13262050 -137521503 + Charlie1a DNA MER1_type 879 1030 -425 746 164 106 34 chr11 13262053 13262261 -137521292 + Charlie1a DNA MER1_type 1186 1408 -47 387 86 0 35 chr11 13262398 13262456 -137521097 + Charlie1a DNA MER1_type 1399 1454 -1 276 221 17 0 chr11 13263216 13263295 -137520258 + MLT1D LTR MaLR 421 626 0 21 0 0 0 chr11 13263330 13263351 -137520202 + AT_rich Low_complexity Low_complexity 1 21 0 401 123 0 0 chr11 13263351 13263408 -137520145 - FLAM_A SINE Alu -25 117 61 206 220 0 0 chr11 13264121 13264180 -137519373 + (TA)n Simple_repeat Simple_repeat 2 60 0 1660 228 102 27 chr11 13264421 13264943 -137518610 + L1ME3A LINE L1 5607 6167 -3 573 226 5 35 chr11 13265102 13265300 -137518253 + MER97c DNA MER1_type? 2 230 -664 1721 145 17 47 chr11 13265300 13265597 -137517956 - AluJo SINE Alu -10 302 15 573 226 5 35 chr11 13265597 13265622 -137517931 + MER97c DNA MER1_type? 230 254 -640 619 260 56 20 chr11 13265743 13265939 -137517614 + MER97a DNA MER1_type? 423 625 -269 309 215 165 0 chr11 13265939 13266018 -137517535 + MER97c DNA MER1_type? 999 1090 0 728 181 17 0 chr11 13266330 13266446 -137517107 - FLAM_A SINE Alu -15 118 1 245 298 48 0 chr11 13266645 13266729 -137516824 + L1ME LINE L1 5732 5819 -302 2317 90 7 10 chr11 13267067 13267368 -137516185 + AluSp SINE Alu 2 301 -12 2566 11 0 0 chr11 13267999 13268274 -137515279 - AluYa5 SINE Alu -3 308 34 1839 157 17 0 chr11 13268467 13268761 -137514792 + AluSx SINE Alu 10 308 -4 226 279 38 13 chr11 13268805 13268884 -137514669 + L2 LINE L2 2550 2630 -684 242 356 25 8 chr11 13269264 13269382 -137514171 + L2 LINE L2 3139 3258 -14 776 120 30 30 chr11 13269408 13269541 -137514012 - MSTD LTR MaLR 0 396 264 530 221 15 8 chr11 13269594 13269725 -137513828 - MSTD LTR MaLR -264 132 1 200 135 0 0 chr11 13270185 13270222 -137513331 + L2 LINE L2 3274 3310 -3 1350 142 125 83 chr11 13270975 13271335 -137512218 - THE1C LTR MaLR 0 375 1 189 296 12 37 chr11 13272368 13272449 -137511104 - L2 LINE L2 -1015 2299 2221 198 281 61 12 chr11 13274188 13274270 -137509283 + L2 LINE L2 3026 3111 -161 233 209 47 0 chr11 13274920 13274963 -137508590 + tRNA-Pro-CCT tRNA tRNA 20 64 -11 21 0 0 0 chr11 13276377 13276398 -137507155 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 13276749 13276777 -137506776 + AT_rich Low_complexity Low_complexity 1 28 0 324 127 0 0 chr11 13276977 13277032 -137506521 + (CA)n Simple_repeat Simple_repeat 2 56 0 387 0 0 0 chr11 13277453 13277496 -137506057 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 189 0 0 0 chr11 13280107 13280128 -137503425 + (A)n Simple_repeat Simple_repeat 1 21 0 2306 82 4 0 chr11 13280128 13280409 -137503144 - AluSp SINE Alu -31 282 1 291 352 9 9 chr11 13281172 13281280 -137502273 + L2 LINE L2 2989 3096 -176 254 227 61 0 chr11 13281401 13281467 -137502086 + L2 LINE L2 3168 3237 -35 226 274 155 12 chr11 13281813 13281981 -137501572 - L3 LINE CR1 -156 1421 1230 378 234 0 27 chr11 13283269 13283386 -137500167 + MIR SINE MIR 25 136 -72 2156 109 6 16 chr11 13283731 13284044 -137499509 - AluSx SINE Alu -2 310 1 193 294 29 15 chr11 13284668 13284736 -137498817 + MIR SINE MIR 52 120 -142 2101 147 0 0 chr11 13285338 13285624 -137497929 + AluSx SINE Alu 1 286 -26 383 131 82 0 chr11 13285978 13286039 -137497514 - Charlie3 DNA MER1_type 0 2712 2647 2099 142 0 7 chr11 13286381 13286690 -137496863 + AluJb SINE Alu 1 307 -5 236 278 31 31 chr11 13287535 13287642 -137495911 + MIR SINE MIR 1 108 -100 2237 117 0 0 chr11 13287886 13288176 -137495377 - AluSq SINE Alu -23 290 1 180 232 111 20 chr11 13288262 13288361 -137495192 + MIR SINE MIR 127 234 -28 2549 64 3 6 chr11 13289008 13289320 -137494233 + AluY SINE Alu 1 311 0 768 181 0 0 chr11 13289611 13289738 -137493815 + FLAM_A SINE Alu 4 130 -3 723 258 26 5 chr11 13289757 13289947 -137493606 + L2 LINE L2 3116 3309 -4 326 323 84 47 chr11 13290262 13290559 -137492994 + L2 LINE L2 2958 3265 -7 2497 57 0 7 chr11 13290868 13291168 -137492385 + AluY SINE Alu 3 300 -11 330 171 110 0 chr11 13291260 13291342 -137492211 + MIR SINE MIR 81 171 -91 206 338 21 7 chr11 13291584 13291726 -137491827 - L3b LINE CR1 -295 1288 1145 2212 70 63 3 chr11 13292387 13292671 -137490882 - AluSc SINE Alu -8 301 1 559 295 95 17 chr11 13292741 13292982 -137490571 + MIR SINE MIR 3 262 0 26 0 0 0 chr11 13293985 13294011 -137489542 + GC_rich Low_complexity Low_complexity 1 26 0 369 0 0 0 chr11 13294092 13294133 -137489420 + (A)n Simple_repeat Simple_repeat 1 41 0 782 188 0 0 chr11 13294133 13294271 -137489282 + AluSc SINE Alu 119 256 -53 2488 164 14 53 chr11 13294287 13294800 -137488753 + L1MB8 LINE L1 5681 6173 -5 324 0 0 0 chr11 13295244 13295280 -137488273 + (TG)n Simple_repeat Simple_repeat 1 36 0 207 0 0 0 chr11 13295337 13295360 -137488193 + (T)n Simple_repeat Simple_repeat 1 23 0 193 281 0 83 chr11 13295745 13295841 -137487712 - MIR SINE MIR -167 95 8 261 155 84 14 chr11 13297387 13297458 -137486095 - MIR3 SINE MIR -22 186 111 480 252 76 0 chr11 13297598 13297717 -137485836 + MER94 DNA DNA 6 133 -1 521 200 0 0 chr11 13298596 13298691 -137484862 + MER53 DNA DNA 1 95 -94 729 270 242 10 chr11 13298777 13299301 -137484252 - L2 LINE L2 -2 3311 2655 277 105 0 0 chr11 13300072 13300110 -137483443 + U5 snRNA snRNA 1 38 -78 1116 147 0 18 chr11 13300110 13300280 -137483273 - AluSq SINE Alu -13 300 134 2215 90 23 3 chr11 13300280 13300579 -137482974 - AluSx SINE Alu -7 305 1 760 158 0 0 chr11 13301077 13301197 -137482356 - FLAM_C SINE Alu -13 120 1 273 244 84 25 chr11 13301350 13301469 -137482084 + MIR SINE MIR 128 253 -9 26 0 0 0 chr11 13301495 13301521 -137482032 + AT_rich Low_complexity Low_complexity 1 26 0 206 222 63 0 chr11 13302447 13302510 -137481043 + MIR SINE MIR 65 131 -77 1900 166 73 5 chr11 13302838 13303213 -137480340 + L1M4 LINE L1 5332 5714 -464 242 237 0 53 chr11 13304448 13304524 -137479029 + A-rich Low_complexity Low_complexity 5 76 0 208 282 164 9 chr11 13304763 13304873 -137478680 + MIR SINE MIR 82 208 -54 1584 173 16 38 chr11 13304922 13305235 -137478318 + AluJo SINE Alu 1 306 -6 26 0 0 0 chr11 13305269 13305295 -137478258 + AT_rich Low_complexity Low_complexity 1 26 0 328 285 163 31 chr11 13305297 13305616 -137477937 - L1MC/D LINE L1 -2036 5772 5412 1541 239 51 20 chr11 13307135 13307587 -137475966 - MLT1C LTR MaLR 0 467 2 256 296 41 10 chr11 13307610 13307708 -137475845 - MIR SINE MIR -142 120 20 207 170 132 0 chr11 13307714 13307767 -137475786 - MER5A DNA MER1_type -11 178 119 384 190 0 60 chr11 13307781 13307881 -137475672 + MER5A DNA MER1_type 4 97 -92 215 148 19 37 chr11 13307878 13307932 -137475621 - MER5B DNA MER1_type -123 55 3 * 353 260 50 83 chr11 13307949 13308130 -137475423 + MER5B DNA MER1_type 4 178 0 276 196 0 0 chr11 13308592 13308638 -137474915 + Alu SINE Alu 1 46 -256 2158 112 13 10 chr11 13308903 13309207 -137474346 + AluSx SINE Alu 2 306 -6 405 277 77 32 chr11 13309258 13309275 -137474278 - MIR SINE MIR -32 230 215 1829 177 0 13 chr11 13309275 13309585 -137473968 - AluJo SINE Alu -6 306 1 405 277 77 32 chr11 13309585 13309787 -137473766 - MIR SINE MIR -47 215 1 255 281 66 33 chr11 13309967 13310088 -137473465 - L2 LINE L2 -7 3306 3182 763 167 8 0 chr11 13310427 13310559 -137472994 + FLAM_C SINE Alu 1 133 0 265 240 53 40 chr11 13311170 13311245 -137472308 - L2 LINE L2 -44 3228 3153 2198 99 13 7 chr11 13312987 13313289 -137470264 + AluSg1 SINE Alu 1 304 -5 234 0 0 0 chr11 13316156 13316182 -137467371 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 182 250 47 16 chr11 13316380 13316444 -137467109 + MIR SINE MIR 66 131 -131 2651 58 0 0 chr11 13317975 13318283 -137465270 - AluY SINE Alu -3 308 1 180 343 9 29 chr11 13318304 13318409 -137465144 + L2 LINE L2 2623 2725 -589 2190 139 0 0 chr11 13318810 13319120 -137464433 - AluSx SINE Alu -2 310 1 224 341 8 16 chr11 13319462 13319585 -137463968 - MIR3 SINE MIR -2 206 85 2076 102 33 13 chr11 13320152 13320457 -137463096 + AluSq SINE Alu 1 311 -2 465 138 8 41 chr11 13320457 13320580 -137462973 + GA-rich Low_complexity Low_complexity 4 122 0 1122 159 30 52 chr11 13320580 13320812 -137462741 + MLT1B LTR MaLR 164 390 0 24 0 0 0 chr11 13320954 13320978 -137462575 + AT_rich Low_complexity Low_complexity 1 24 0 400 226 0 0 chr11 13321554 13321638 -137461915 + L1MA9 LINE L1 6044 6127 -185 2456 74 0 0 chr11 13321812 13322110 -137461443 - AluY SINE Alu -13 298 1 1585 153 59 7 chr11 13322128 13322416 -137461137 - L1MA7 LINE L1 0 6291 5989 1481 113 132 39 chr11 13322631 13322888 -137460665 + AluSx SINE Alu 3 283 -29 180 0 0 0 chr11 13322888 13322908 -137460645 + (CCAA)n Simple_repeat Simple_repeat 2 21 0 906 162 116 95 chr11 13323353 13323637 -137459916 + AluJo SINE Alu 23 312 0 475 320 82 18 chr11 13323661 13323880 -137459673 - MIR SINE MIR -12 250 18 1207 193 0 19 chr11 13326451 13326664 -137456889 - AluSc SINE Alu -14 295 87 222 208 0 0 chr11 13327457 13327505 -137456048 + (TG)n Simple_repeat Simple_repeat 1 48 0 208 148 37 19 chr11 13327528 13327582 -137455971 + (TA)n Simple_repeat Simple_repeat 1 55 0 388 266 13 65 chr11 13330054 13330208 -137453345 - MIR SINE MIR -33 229 84 210 272 139 44 chr11 13330439 13330619 -137452934 - MIR SINE MIR -46 216 20 181 279 81 23 chr11 13331140 13331226 -137452327 + MIR SINE MIR 36 126 -136 283 273 61 20 chr11 13331255 13331354 -137452199 - L2 LINE L2 -34 3238 3136 236 271 29 0 chr11 13331792 13331862 -137451691 + L2 LINE L2 3242 3313 0 433 325 121 5 chr11 13332340 13332546 -137451007 - MIR SINE MIR -14 248 19 211 348 65 13 chr11 13334570 13334725 -137448828 - MIR SINE MIR -12 250 88 259 346 112 39 chr11 13335209 13335388 -137448165 + L3 LINE CR1 326 517 -1060 209 262 82 0 chr11 13335622 13335683 -137447870 - L2 LINE L2 -33 3280 3215 270 256 165 33 chr11 13335887 13336008 -137447545 + L3 LINE CR1 1345 1481 -96 1006 298 59 15 chr11 13336903 13337500 -137446053 - MER115 DNA AcHobo 0 693 3 676 248 86 22 chr11 13338280 13338502 -137445051 + MIR SINE MIR 25 260 -2 358 221 74 0 chr11 13339695 13339790 -137443763 + MIR SINE MIR 104 205 -57 2258 119 0 0 chr11 13340850 13341153 -137442400 - AluSg SINE Alu -3 307 5 225 232 0 36 chr11 13342273 13342329 -137441224 + MLT1K LTR MaLR 490 543 -45 213 39 0 0 chr11 13342724 13342750 -137440803 + (TGGGGG)n Simple_repeat Simple_repeat 4 29 0 184 250 45 0 chr11 13344492 13344536 -137439017 + MIR SINE MIR 79 124 -138 580 75 0 38 chr11 13345656 13345762 -137437791 + (TG)n Simple_repeat Simple_repeat 1 102 0 276 200 0 0 chr11 13346118 13346178 -137437375 + CT-rich Low_complexity Low_complexity 1 60 0 236 364 53 23 chr11 13347591 13347723 -137435830 - L2 LINE L2 -19 3253 3118 2489 57 3 10 chr11 13350328 13350629 -137432924 - AluY SINE Alu -12 299 1 184 365 0 0 chr11 13352155 13352218 -137431335 + MIR SINE MIR 32 94 -114 210 257 9 73 chr11 13352723 13352832 -137430721 + CT-rich Low_complexity Low_complexity 2 103 0 2480 64 3 0 chr11 13352834 13353131 -137430422 - AluY SINE Alu -4 307 10 21 0 0 0 chr11 13353834 13353855 -137429698 + AT_rich Low_complexity Low_complexity 1 21 0 291 203 43 0 chr11 13354143 13354212 -137429341 + MIR SINE MIR 71 142 -120 2996 212 130 42 chr11 13356056 13357020 -137426533 + L1M4 LINE L1 4067 5114 -1032 564 296 28 24 chr11 13357434 13357647 -137425906 + MIR SINE MIR 23 236 -26 354 237 32 121 chr11 13358289 13358479 -137425074 - MIR SINE MIR -62 200 28 255 172 195 35 chr11 13460810 13460897 -137322656 - MER103 DNA DNA -50 116 16 1336 249 23 20 chr11 13461070 13461412 -137322141 + L1MDa LINE L1 3 345 -6195 728 235 10 73 chr11 13461415 13461619 -137321934 - AluJb SINE Alu -13 299 109 1791 165 0 14 chr11 13461876 13462173 -137321380 + AluJb SINE Alu 3 295 -17 24 0 0 0 chr11 13462173 13462197 -137321356 + AT_rich Low_complexity Low_complexity 1 24 0 294 236 104 42 chr11 13462339 13462483 -137321070 - L1ME4a LINE L1 -1 6120 5968 2063 34 0 0 chr11 13462881 13463115 -137320438 - L1PA2 LINE L1 0 6155 5922 1928 154 0 3 chr11 13463470 13463768 -137319785 - AluSx SINE Alu -15 297 1 329 289 8 31 chr11 13463970 13464098 -137319455 + (TATATG)n Simple_repeat Simple_repeat 2 126 0 421 326 168 24 chr11 13465202 13466113 -137317440 - L2 LINE L2 -212 3060 1992 440 261 24 101 chr11 13466357 13466564 -137316989 + MIR SINE MIR 48 238 -24 511 251 30 36 chr11 13466588 13466755 -137316798 - MIR SINE MIR -37 225 60 321 197 53 0 chr11 13466765 13466841 -137316712 + MIR SINE MIR 126 205 -57 2118 90 3 3 chr11 13466943 13467253 -137316300 + L1P LINE L1 3126 3435 -2711 1748 278 66 30 chr11 13467394 13468216 -137315337 - L2 LINE L2 -90 3223 2375 1164 286 35 21 chr11 13468269 13468643 -137314910 + LTR16C LTR ERVL 24 402 -89 426 268 95 12 chr11 13468882 13469050 -137314503 - LTR16C LTR ERVL -3 488 307 2251 85 3 3 chr11 13469109 13469391 -137314162 + AluSg SINE Alu 6 287 -23 325 220 110 10 chr11 13469405 13469505 -137314048 + L1MC4 LINE L1 7933 8042 0 2005 143 0 0 chr11 13469519 13469799 -137313754 + AluSx SINE Alu 1 280 -32 351 0 0 0 chr11 13469801 13469840 -137313713 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 956 271 43 15 chr11 13469850 13470178 -137313375 + L1PBa LINE L1 6 342 -6521 3818 144 14 29 chr11 13470318 13471130 -137312423 - L1MA9 LINE L1 -387 5925 5126 375 216 129 9 chr11 13471385 13471501 -137312052 - MIR SINE MIR -12 250 121 182 274 168 0 chr11 13471704 13471817 -137311736 + L2 LINE L2 3136 3267 -5 254 301 163 24 chr11 13472462 13472585 -137310968 + MIR SINE MIR 13 152 -110 917 197 77 19 chr11 13472807 13473015 -137310538 + MIR SINE MIR 2 221 -41 481 284 105 12 chr11 13474273 13474435 -137309118 + MIR SINE MIR 3 179 -83 627 262 62 8 chr11 13475410 13475600 -137307953 + MIR SINE MIR 38 238 -24 23 0 0 0 chr11 13475869 13475892 -137307661 + AT_rich Low_complexity Low_complexity 1 23 0 344 305 123 32 chr11 13476037 13476224 -137307329 + MIR SINE MIR 53 256 -6 8624 129 23 3 chr11 13476252 13477522 -137306031 - HSMAR2 DNA Mariner -3 1299 5 483 268 16 0 chr11 13477639 13477676 -137305877 - L1MA10 LINE L1 -44 6290 6254 257 319 45 38 chr11 13477676 13477833 -137305720 - L1MD2 LINE L1 -246 6113 5956 508 192 39 0 chr11 13477842 13477946 -137305607 - L1M4 LINE L1 -835 5311 5204 * 2231 243 88 26 chr11 13477945 13478093 -137305460 - L1MC3 LINE L1 -380 7405 7268 2022 209 8 3 chr11 13478093 13478456 -137305097 - MLT1A1 LTR MaLR 0 365 1 2231 243 88 26 chr11 13478456 13478658 -137304895 - L1MC3 LINE L1 -517 7268 7080 189 107 0 0 chr11 13478658 13478686 -137304867 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 2231 243 88 26 chr11 13478686 13479026 -137304527 - L1MC3 LINE L1 -705 7080 6671 268 188 13 0 chr11 13479112 13479171 -137304382 + MER5A DNA MER1_type 2 61 -128 418 313 28 17 chr11 13479844 13480038 -137303515 + MER5B DNA MER1_type 1 178 0 1758 172 3 27 chr11 13481570 13481867 -137301686 - AluJo SINE Alu -22 290 1 1628 197 0 0 chr11 13482520 13482804 -137300749 + AluJb SINE Alu 21 304 -8 1470 157 92 29 chr11 13484112 13484393 -137299160 + AluJb SINE Alu 5 303 -9 242 247 32 54 chr11 13484429 13484522 -137299031 - L1M4 LINE L1 -1146 5000 4910 303 180 0 0 chr11 13484574 13484624 -137298929 + (TTAGGG)n Simple_repeat Simple_repeat 3 52 0 248 307 68 28 chr11 13484647 13484823 -137298730 - L1M4 LINE L1 -1439 4707 4525 1963 174 68 3 chr11 13484907 13485246 -137298307 - MLT1A1 LTR MaLR -4 361 1 287 212 158 6 chr11 13485410 13485575 -137297978 - L1ME LINE L1 -594 5576 5386 228 323 53 41 chr11 13485842 13485964 -137297589 - MIR SINE MIR -68 140 43 246 176 0 88 chr11 13486393 13486484 -137297069 + CT-rich Low_complexity Low_complexity 5 87 0 237 162 0 0 chr11 13488220 13488257 -137295296 - LTR16C LTR ERVL -2 489 453 602 281 90 34 chr11 13488316 13488583 -137294970 - LTR16C LTR ERVL -167 324 43 562 198 60 126 chr11 13491078 13491260 -137292293 + MER5B DNA MER1_type 3 172 -6 552 152 107 9 chr11 13491398 13491510 -137292043 - L2 LINE L2 0 3313 3191 303 248 0 0 chr11 13491880 13491985 -137291568 + (ATG)n Simple_repeat Simple_repeat 2 106 0 23048 69 12 2 chr11 13494295 13497991 -137285562 + L1PA7 LINE L1 2447 6148 -6 1218 204 63 3 chr11 13498000 13498303 -137285250 - MER33 DNA MER1_type -14 310 1 687 277 69 36 chr11 13498316 13498619 -137284934 - L1ME LINE L1 -330 5791 5479 542 268 102 77 chr11 13498638 13498699 -137284854 + HAL1 LINE L1 790 848 -1659 1844 276 33 14 chr11 13498699 13499210 -137284343 + LTR33 LTR ERVL 1 521 0 542 268 102 77 chr11 13499210 13499869 -137283684 + HAL1 LINE L1 848 1534 -973 348 375 46 18 chr11 13499870 13500275 -137283278 + L2 LINE L2 2652 3074 -198 193 320 195 8 chr11 13500323 13500451 -137283102 - L2 LINE L2 -15 3257 3106 351 65 0 0 chr11 13501105 13501151 -137282402 + (T)n Simple_repeat Simple_repeat 1 46 0 4604 223 34 20 chr11 13501264 13501894 -137281659 + L1M4 LINE L1 3797 4453 -1693 2011 145 0 10 chr11 13501894 13502205 -137281348 + AluSq SINE Alu 1 308 -5 4604 223 34 20 chr11 13502205 13502744 -137280809 + L1M4 LINE L1 4453 4983 -1163 569 269 20 30 chr11 13502934 13503131 -137280422 + MIR SINE MIR 43 237 -25 220 68 23 23 chr11 13504048 13504092 -137279461 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1129 103 0 0 chr11 13504092 13504238 -137279315 - AluSg/x SINE Alu -32 280 135 306 87 0 0 chr11 13505790 13505836 -137277717 + (GA)n Simple_repeat Simple_repeat 1 46 0 3100 163 11 15 chr11 13506345 13506878 -137276675 + LTR26B LTR ERV1 1 531 0 204 40 0 0 chr11 13507023 13507048 -137276505 + (CAGT)n Simple_repeat Simple_repeat 4 28 0 345 330 0 0 chr11 13507051 13507154 -137276399 - L2 LINE L2 -10 3303 3201 488 348 48 48 chr11 13507205 13507734 -137275819 - L2 LINE L2 -267 3005 2467 965 188 6 11 chr11 13507799 13507975 -137275578 - MLT1C LTR MaLR 0 467 293 206 335 5 61 chr11 13508029 13508226 -137275327 - L2 LINE L2 -912 2402 2217 2882 3 0 0 chr11 13509812 13510114 -137273439 - AluYa5 SINE Alu -7 304 3 2235 119 0 0 chr11 13510699 13510994 -137272559 - AluSq SINE Alu -18 295 1 1531 165 98 32 chr11 13511487 13511694 -137271859 - MLT1C LTR MaLR -10 616 424 180 97 0 0 chr11 13511694 13511725 -137271828 + (TG)n Simple_repeat Simple_repeat 2 32 0 1531 165 98 32 chr11 13511725 13511903 -137271650 - MLT1C LTR MaLR -202 424 2 277 114 0 23 chr11 13511999 13512043 -137271510 + MER39 LTR ERV1 1 43 -664 * 974 164 0 6 chr11 13512035 13512194 -137271359 + MER39 LTR ERV1 549 706 -1 9989 102 5 6 chr11 13512943 13514341 -137269212 - Tigger1 DNA MER2_type -320 2098 703 371 155 0 0 chr11 13514625 13514683 -137268870 - L1MA9 LINE L1 -5 6307 6250 331 244 24 41 chr11 13514924 13515047 -137268506 + MIR3 SINE MIR 36 156 -52 281 272 116 10 chr11 13515888 13516080 -137267473 + MIR SINE MIR 11 225 -37 203 184 0 0 chr11 13516108 13516146 -137267407 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1225 177 20 19 chr11 13516281 13517216 -137266337 - L1MB8 LINE L1 0 6178 5092 328 239 15 30 chr11 13517703 13517837 -137265716 + L2 LINE L2 2930 3061 -211 453 211 112 33 chr11 13519062 13519214 -137264339 - L2 LINE L2 -42 3271 3108 201 299 117 22 chr11 13519360 13519497 -137264056 - L2 LINE L2 -224 3089 2940 183 273 0 0 chr11 13520190 13520245 -137263308 + L2 LINE L2 3210 3264 -8 591 241 143 16 chr11 13520367 13520612 -137262941 - L1ME4a LINE L1 -26 6095 5820 318 318 128 10 chr11 13520635 13520924 -137262629 - L2 LINE L2 -629 2685 2363 740 255 75 36 chr11 13521202 13521480 -137262073 - L2 LINE L2 -6 3307 3019 319 252 86 60 chr11 13521485 13521636 -137261917 - L2 LINE L2 -3135 179 25 22 0 0 0 chr11 13522278 13522300 -137261253 + AT_rich Low_complexity Low_complexity 1 22 0 810 217 122 30 chr11 13522528 13522758 -137260795 + MER112 DNA MER1_type 8 258 -2 265 345 18 9 chr11 13522865 13522975 -137260578 + L2 LINE L2 3197 3307 -6 488 250 55 6 chr11 13523379 13523398 -137260155 - L1MA10 LINE L1 0 6334 6316 1514 238 133 66 chr11 13523398 13524037 -137259516 - L1ME2 LINE L1 -11 6153 5447 1913 145 16 10 chr11 13524037 13524341 -137259212 - AluSx SINE Alu -6 306 1 1514 238 133 66 chr11 13524341 13524516 -137259037 - L1ME2 LINE L1 -717 5447 5285 489 174 29 6 chr11 13524572 13524744 -137258809 + (TA)n Simple_repeat Simple_repeat 2 177 0 350 74 19 0 chr11 13524744 13524798 -137258755 - L1ME2 LINE L1 -904 5242 5188 1437 29 0 6 chr11 13524804 13524975 -137258578 - L1PA5 LINE L1 0 6154 5985 696 220 77 0 chr11 13525147 13525315 -137258238 + L1MD2 LINE L1 6161 6341 -18 378 290 143 51 chr11 13525385 13525602 -137257951 + MIR SINE MIR 6 242 -20 2223 124 0 7 chr11 13525621 13525928 -137257625 - AluSx SINE Alu -7 305 1 2112 214 17 40 chr11 13526542 13527148 -137256405 - LTR27 LTR ERV1 -141 495 3 986 323 100 29 chr11 13527495 13528585 -137254968 - L2 LINE L2 -4 3309 2147 336 317 41 24 chr11 13528788 13528911 -137254642 - L2 LINE L2 -4 3268 3144 362 253 11 11 chr11 13529051 13529138 -137254415 - MIR SINE MIR -155 107 21 411 290 51 18 chr11 13529616 13529833 -137253720 + L2 LINE L2 2590 2813 -501 380 292 50 0 chr11 13530077 13530197 -137253356 + L2 LINE L2 3147 3272 0 854 119 33 12 chr11 13531631 13531887 -137251666 + CT-rich Low_complexity Low_complexity 1 261 0 240 170 75 0 chr11 13531892 13531945 -137251608 - Alu SINE Alu 0 302 246 1576 193 20 7 chr11 13531955 13532256 -137251297 - AluJb SINE Alu -7 305 1 254 246 8 102 chr11 13532571 13532689 -137250864 - MER34 LTR ERV1 -395 147 41 395 229 137 0 chr11 13532749 13532880 -137250673 + MIR SINE MIR 77 225 -37 264 137 0 0 chr11 13533033 13533084 -137250469 + (T)n Simple_repeat Simple_repeat 1 51 0 2847 13 0 3 chr11 13534257 13534569 -137248984 - AluYa5 SINE Alu 0 311 1 1168 254 98 33 chr11 13534701 13535187 -137248366 - MLT1H LTR MaLR -4 545 18 1640 125 24 52 chr11 13535333 13535661 -137247892 - MER33 DNA MER1_type 0 324 6 204 284 49 20 chr11 13535736 13535838 -137247715 + MIR SINE MIR 152 256 -6 203 0 0 36 chr11 13535955 13535983 -137247570 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1738 177 0 32 chr11 13535985 13536295 -137247258 - AluJb SINE Alu -12 300 1 5709 36 7 0 chr11 13536476 13537179 -137246374 - L1PA5 LINE L1 -226 5928 5222 1519 174 70 86 chr11 13537628 13538001 -137245552 + MLT1B LTR MaLR 1 367 -23 242 145 53 26 chr11 13538001 13538077 -137245476 + (TTATA)n Simple_repeat Simple_repeat 3 80 0 192 152 0 0 chr11 13538105 13538138 -137245415 + MIR SINE MIR 78 110 -152 543 273 82 8 chr11 13538200 13538509 -137245044 + MLT1I LTR MaLR 1 370 -39 1524 199 0 33 chr11 13539143 13539445 -137244108 + AluJo SINE Alu 4 295 -17 274 182 36 0 chr11 13539516 13539571 -137243982 + L2 LINE L2 3254 3310 -3 241 252 90 27 chr11 13539582 13539693 -137243860 + MIR SINE MIR 25 142 -120 318 243 45 90 chr11 13540663 13540840 -137242713 + L2 LINE L2 2336 2504 -810 303 299 111 8 chr11 13542917 13543034 -137240519 + L2 LINE L2 3183 3311 -2 614 267 74 0 chr11 13543575 13543751 -137239802 + MIR SINE MIR 74 262 0 1289 258 109 28 chr11 13544060 13544455 -137239098 - LTR16A LTR ERVL -6 444 18 2388 200 114 137 chr11 13545298 13546160 -137237393 + L1MC4 LINE L1 6356 7236 -806 232 31 0 0 chr11 13546160 13546192 -137237361 + HSMAR1 DNA Mariner 1 32 -1255 1898 70 8 0 chr11 13546192 13546459 -137237094 + L1PA8 LINE L1 5912 6180 0 455 84 0 56 chr11 13546464 13546535 -137237018 - MADE1 DNA Mariner -12 68 2 2388 200 114 137 chr11 13546535 13546836 -137236717 + L1MC4 LINE L1 7239 7599 -443 3160 178 24 43 chr11 13546844 13546930 -137236623 + L1MB7 LINE L1 5478 5564 -620 2256 82 26 10 chr11 13546930 13547233 -137236320 + AluSg SINE Alu 1 308 -2 3160 178 24 43 chr11 13547233 13547866 -137235687 + L1MB7 LINE L1 5564 6183 -1 584 309 104 35 chr11 13547980 13548404 -137235149 - L2 LINE L2 -1391 1923 1471 1917 249 69 68 chr11 13548464 13549170 -137234383 - MER72 LTR ERV1 -10 712 6 427 255 108 19 chr11 13549247 13549404 -137234149 + MIR SINE MIR 86 256 -6 264 304 35 61 chr11 13549460 13549575 -137233978 + L2 LINE L2 3190 3301 -12 282 346 28 22 chr11 13549599 13549778 -137233775 - MIR SINE MIR -14 248 69 2017 134 3 0 chr11 13550249 13550564 -137232989 - AluSq SINE Alu 0 316 1 439 59 15 15 chr11 13550914 13550982 -137232571 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 568 257 80 33 chr11 13550995 13551295 -137232258 - L1MC5 LINE L1 -387 7574 7261 220 299 75 19 chr11 13551484 13551591 -137231962 - L2 LINE L2 -1 3271 3159 222 303 103 49 chr11 13553402 13553587 -137229966 + MIR SINE MIR 61 255 -7 698 293 108 13 chr11 13553640 13553872 -137229681 + MIR SINE MIR 8 261 -1 202 256 0 0 chr11 13554351 13554394 -137229159 + A-rich Low_complexity Low_complexity 1 43 0 2554 38 0 0 chr11 13554890 13555182 -137228371 - AluY SINE Alu -19 292 1 326 170 2 31 chr11 13555620 13555696 -137227857 + L1M2 LINE L1 5767 5841 -339 279 0 0 0 chr11 13555784 13555815 -137227738 + (CA)n Simple_repeat Simple_repeat 1 31 0 408 284 149 37 chr11 13555822 13556143 -137227410 + L2 LINE L2 2231 2587 -727 8091 127 19 3 chr11 13556324 13557533 -137226020 + Tigger3b DNA MER2_type 4 1231 0 276 306 101 44 chr11 13557618 13557981 -137225572 + L2 LINE L2 2683 3061 -211 8036 136 11 11 chr11 13558010 13558342 -137225211 - HSMAR2 DNA Mariner -68 1234 903 13107 81 0 0 chr11 13558342 13560778 -137222775 + L1PA7 LINE L1 3709 6149 -5 8036 136 11 11 chr11 13560778 13561678 -137221875 - HSMAR2 DNA Mariner -399 903 3 287 262 24 24 chr11 13561874 13561958 -137221595 - HAL1b LINE L1 -437 911 828 22 88 0 0 chr11 13562613 13562670 -137220883 + AT_rich Low_complexity Low_complexity 1 57 0 245 316 55 33 chr11 13562678 13562953 -137220600 - L1M4 LINE L1 -2988 3158 2878 22 56 0 0 chr11 13562990 13563026 -137220527 + AT_rich Low_complexity Low_complexity 1 36 0 1093 243 98 3 chr11 13563255 13563572 -137219981 + L2 LINE L2 2403 2749 -565 346 148 56 0 chr11 13563572 13563626 -137219927 - Tigger3(Golem) DNA MER2_type -1 3028 2972 * 1863 93 7 7 chr11 13563625 13563894 -137219659 - Tigger3(Golem) DNA MER2_type -226 2803 2535 481 296 147 75 chr11 13565085 13565742 -137217811 + L2 LINE L2 2571 3270 -2 2299 93 0 7 chr11 13565846 13566146 -137217407 + AluSg SINE Alu 1 298 -12 322 285 75 92 chr11 13566706 13567064 -137216489 - L2 LINE L2 -4 3268 2917 420 228 119 0 chr11 13567127 13567228 -137216325 + MER94 DNA DNA 1 113 -21 1677 158 63 36 chr11 13567431 13567473 -137216080 - THE1C LTR MaLR 0 428 389 2303 108 0 0 chr11 13567473 13567794 -137215759 + AluSq SINE Alu 1 313 0 1677 158 63 36 chr11 13567794 13567843 -137215710 - THE1C LTR MaLR -39 389 343 4444 92 37 2 chr11 13567843 13568440 -137215113 - L1PA10 LINE L1 -5 6163 5546 1677 158 63 36 chr11 13568440 13568766 -137214787 - THE1C LTR MaLR -85 343 1 234 268 0 122 chr11 13568805 13568928 -137214625 + L2 LINE L2 3150 3257 -15 585 255 112 48 chr11 13568936 13569187 -137214366 + L2 LINE L2 3042 3308 -5 287 291 201 0 chr11 13570661 13570795 -137212758 - L2 LINE L2 0 3272 3112 190 261 0 0 chr11 13571834 13571880 -137211673 - MIR SINE MIR -65 143 98 242 279 109 24 chr11 13572169 13572334 -137211219 + MIR3 SINE MIR 9 187 -21 1518 252 94 29 chr11 13573081 13573127 -137210426 - MLT2B1 LTR ERVL 0 520 478 306 0 0 0 chr11 13573127 13573161 -137210392 + (TG)n Simple_repeat Simple_repeat 2 35 0 1518 252 94 29 chr11 13573161 13573348 -137210205 - MLT2B1 LTR ERVL -42 478 305 297 0 0 0 chr11 13573348 13573381 -137210172 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1518 252 94 29 chr11 13573381 13573634 -137209919 - MLT2B1 LTR ERVL -215 305 1 249 283 43 11 chr11 13574563 13574655 -137208898 - LTR67 LTR ERVL -75 482 388 1882 154 51 0 chr11 13575238 13575530 -137208023 - AluJb SINE Alu -5 307 1 181 282 24 89 chr11 13575555 13575679 -137207874 - L2 LINE L2 0 3272 3157 460 321 23 0 chr11 13575744 13575875 -137207678 + MER94 DNA DNA 1 134 0 1923 153 3 16 chr11 13575929 13576237 -137207316 - AluSx SINE Alu -8 304 1 695 257 77 80 chr11 13576339 13576543 -137207010 - MLT1K LTR MaLR -19 569 365 2351 153 80 5 chr11 13576543 13576941 -137206612 - MSTA LTR MaLR 0 428 1 695 257 77 80 chr11 13576941 13577125 -137206428 - MLT1K LTR MaLR -223 365 182 726 242 76 114 chr11 13577195 13577696 -137205857 + LTR38 LTR ERV1 50 541 -15 1336 183 71 11 chr11 13578139 13578407 -137205146 - AluJo SINE Alu -18 294 11 323 329 63 0 chr11 13578415 13578558 -137204995 + MIR SINE MIR 70 221 -41 2097 133 3 0 chr11 13578594 13578888 -137204665 - AluSq SINE Alu -18 295 1 436 234 95 7 chr11 13579174 13579311 -137204242 + MIR SINE MIR 85 233 -29 1772 169 13 13 chr11 13579997 13580305 -137203248 - AluJb SINE Alu -3 309 2 597 283 25 29 chr11 13580305 13580545 -137203008 - LTR16A1 LTR ERVL -6 451 213 212 255 20 0 chr11 13580776 13580827 -137202726 - L3 LINE CR1 -204 1373 1322 190 339 18 0 chr11 13580848 13580904 -137202649 - L2 LINE L2 -8 3264 3208 332 344 16 0 chr11 13580904 13581029 -137202524 - L3 LINE CR1 -829 748 622 2003 125 3 56 chr11 13581353 13581673 -137201880 + AluSx SINE Alu 1 303 -9 28 91 0 0 chr11 13581699 13581776 -137201777 + AT_rich Low_complexity Low_complexity 1 77 0 236 279 0 0 chr11 13582449 13582510 -137201043 + L1M4 LINE L1 3881 3941 -2205 409 264 0 98 chr11 13582588 13582751 -137200802 - MIR SINE MIR -21 241 95 631 251 81 51 chr11 13583059 13583156 -137200397 + MIR SINE MIR 14 107 -155 9254 161 22 2 chr11 13583156 13583887 -137199666 - L1PA13 LINE L1 0 6163 5448 1534 186 33 20 chr11 13583887 13584188 -137199365 - AluJb SINE Alu -7 305 1 9254 161 22 2 chr11 13584188 13585803 -137197750 - L1PA13 LINE L1 -715 5448 3793 631 251 81 51 chr11 13585803 13585940 -137197613 + MIR SINE MIR 107 255 -7 570 212 114 8 chr11 13586014 13586146 -137197407 + MER5A DNA MER1_type 1 146 -43 1836 253 48 23 chr11 13586146 13586624 -137196929 + MLT1F LTR MaLR 1 490 -52 7061 43 1 1 chr11 13586637 13587477 -137196076 - L1PA5 LINE L1 -4 6150 5311 426 138 0 0 chr11 13587492 13587557 -137195996 + MLT1F LTR MaLR 501 565 -2 262 235 0 0 chr11 13587559 13587610 -137195943 + MER5A DNA MER1_type 139 189 0 2214 108 3 13 chr11 13587693 13588009 -137195544 + AluSq SINE Alu 1 313 0 197 294 24 24 chr11 13588078 13588163 -137195390 + L3 LINE CR1 1065 1149 -428 1035 242 58 31 chr11 13590177 13590628 -137192925 - Charlie2 DNA MER1_type -1 2861 2399 * 2177 277 70 45 chr11 13590623 13591451 -137192102 - Charlie2b DNA MER1_type -1741 1041 193 216 196 0 0 chr11 13591471 13591517 -137192036 + A-rich Low_complexity Low_complexity 1 46 0 273 292 28 0 chr11 13591610 13591682 -137191871 - LTR67 LTR ERVL -370 187 114 215 336 167 9 chr11 13591884 13592208 -137191345 + L2 LINE L2 2353 2727 -587 826 208 60 0 chr11 13592231 13592399 -137191154 + MER5B DNA MER1_type 1 178 0 308 263 70 32 chr11 13592440 13592596 -137190957 + L2 LINE L2 2845 3006 -266 2817 3 0 7 chr11 13592685 13592990 -137190563 + AluYa5 SINE Alu 1 303 -8 189 121 0 0 chr11 13593113 13593146 -137190407 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 210 171 0 0 chr11 13593411 13593446 -137190107 + (TTA)n Simple_repeat Simple_repeat 1 35 0 802 268 77 45 chr11 13594090 13594649 -137188904 - L1ME4a LINE L1 -41 6080 5504 252 301 36 0 chr11 13595666 13595749 -137187804 - MER117 DNA MER1_type 0 197 112 186 318 106 0 chr11 13595811 13595877 -137187676 + L2 LINE L2 3199 3271 -1 215 316 88 52 chr11 13596258 13596451 -137187102 - MIR SINE MIR -41 221 22 395 134 0 56 chr11 13596591 13596733 -137186820 + (CAGAGA)n Simple_repeat Simple_repeat 5 138 0 202 244 0 0 chr11 13596867 13596912 -137186641 + T-rich Low_complexity Low_complexity 1 45 0 1653 183 30 21 chr11 13597992 13598326 -137185227 + L1MA9 LINE L1 5972 6308 -4 2098 132 3 10 chr11 13599360 13599671 -137183882 + AluSx SINE Alu 1 309 -3 529 238 94 0 chr11 13599840 13600000 -137183553 + HAL1 LINE L1 2237 2411 -96 378 297 93 0 chr11 13600201 13600319 -137183234 + L2 LINE L2 3136 3264 -8 343 262 223 53 chr11 13600749 13600955 -137182598 - MIR SINE MIR 0 262 22 349 269 11 0 chr11 13601195 13601288 -137182265 - MIR SINE MIR -2 260 167 2125 111 0 0 chr11 13601332 13601640 -137181913 + AluSg SINE Alu 1 308 0 610 200 9 0 chr11 13601654 13601764 -137181789 + MER58A DNA MER1_type 5 115 0 320 64 0 21 chr11 13601765 13601812 -137181741 - AluSc SINE Alu -172 127 82 559 77 13 0 chr11 13601912 13601990 -137181563 - AluY SINE Alu -232 79 1 363 204 158 0 chr11 13601990 13602142 -137181411 + L1MD1 LINE L1 4318 4493 -1653 4942 174 40 14 chr11 13602153 13603584 -137179969 + L1MD1 LINE L1 4769 6235 -7 26 30 0 0 chr11 13603749 13603782 -137179771 + AT_rich Low_complexity Low_complexity 1 33 0 403 255 45 41 chr11 13603850 13604031 -137179522 - MIR SINE MIR -67 141 11 645 314 75 9 chr11 13604039 13604265 -137179288 + MIR SINE MIR 8 248 -14 938 197 86 4 chr11 13605457 13605690 -137177863 + Charlie1 DNA MER1_type 1721 1972 -789 258 291 203 11 chr11 13605717 13605899 -137177654 - L2 LINE L2 -1094 2220 2004 532 210 168 0 chr11 13606520 13606687 -137176866 - MER5C DNA MER1_type -2 322 128 767 173 60 0 chr11 13607249 13607399 -137176154 - FRAM SINE Alu -18 158 1 210 71 0 0 chr11 13608192 13608220 -137175333 + (A)n Simple_repeat Simple_repeat 1 28 0 1948 148 3 3 chr11 13608268 13608559 -137174994 + AluSx SINE Alu 3 293 -19 2084 143 0 3 chr11 13608743 13609044 -137174509 - AluSx SINE Alu -12 300 1 6520 57 5 8 chr11 13609252 13610101 -137173452 + L1PA6 LINE L1 5308 6153 -1 25 31 0 0 chr11 13610102 13610134 -137173419 + AT_rich Low_complexity Low_complexity 1 32 0 258 179 0 90 chr11 13610807 13610848 -137172705 - MER5C DNA MER1_type -200 124 92 2099 122 7 3 chr11 13610848 13611135 -137172418 - AluSg SINE Alu -22 288 1 258 179 0 90 chr11 13611135 13611171 -137172382 - MER5C DNA MER1_type -232 92 54 339 85 0 0 chr11 13611449 13611496 -137172057 + (TG)n Simple_repeat Simple_repeat 2 48 0 26 88 0 0 chr11 13611755 13611823 -137171730 + AT_rich Low_complexity Low_complexity 1 68 0 344 295 93 51 chr11 13612000 13612237 -137171316 + L1MC/D LINE L1 5313 5559 -2249 464 308 49 45 chr11 13612875 13613122 -137170431 - MIR SINE MIR -13 249 2 3316 72 28 0 chr11 13614476 13614906 -137168647 + MLT2A1 LTR ERVL 1 442 -2 1069 264 108 24 chr11 13614906 13615352 -137168201 - LTR33 LTR ERVL -14 507 21 1453 165 12 5 chr11 13615658 13615996 -137167557 + MSTB LTR MaLR 1 426 0 2681 151 15 0 chr11 13615996 13616461 -137167092 + MSTB-int LTR MaLR 1 472 -1179 611 261 72 57 chr11 13616473 13616948 -137166605 - L1MEd LINE L1 -3220 3721 3240 232 211 0 53 chr11 13617269 13617345 -137166208 - HAL1 LINE L1 -904 1603 1532 330 274 86 43 chr11 13617527 13617782 -137165771 - L1MEd LINE L1 -4908 2023 1758 235 230 62 45 chr11 13617874 13618052 -137165501 - L1MEd LINE L1 -4961 1462 1282 2354 75 34 0 chr11 13618052 13618346 -137165207 + AluY SINE Alu 1 304 -7 210 139 0 0 chr11 13618522 13618558 -137164995 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 760 152 46 53 chr11 13618877 13619028 -137164525 - MER5B DNA MER1_type -28 150 1 594 242 45 93 chr11 13619085 13619354 -137164199 + MER102b DNA MER1_type 54 309 -32 297 0 0 0 chr11 13619806 13619839 -137163714 + (TG)n Simple_repeat Simple_repeat 1 33 0 972 134 0 0 chr11 13619839 13619996 -137163557 + (TA)n Simple_repeat Simple_repeat 1 157 0 5069 211 19 16 chr11 13620595 13621944 -137161609 + L1 LINE L1 2798 4151 -1995 1021 184 40 5 chr11 13621946 13622147 -137161406 - MSTA LTR MaLR 0 428 221 264 219 0 0 chr11 13622163 13622227 -137161326 + L1M4 LINE L1 3179 3242 -2904 932 121 57 0 chr11 13622229 13622386 -137161167 + MSTA LTR MaLR 42 207 -221 527 71 24 0 chr11 13622374 13622458 -137161095 - MSTA LTR MaLR -342 86 1 * 1507 91 45 0 chr11 13622474 13622672 -137160881 + AluSx SINE Alu 1 207 -105 4438 64 0 2 chr11 13622775 13623338 -137160215 + L1PA6 LINE L1 5593 6154 0 347 285 41 49 chr11 13623618 13623741 -137159812 - MIR SINE MIR -67 141 20 209 341 32 16 chr11 13623964 13624090 -137159463 + L2 LINE L2 2599 2726 -588 274 267 103 26 chr11 13624140 13624256 -137159297 + MIR3 SINE MIR 70 194 -14 311 154 0 0 chr11 13624282 13624334 -137159219 + A-rich Low_complexity Low_complexity 1 52 0 224 240 40 0 chr11 13624421 13624471 -137159082 + MIR SINE MIR 53 104 -158 212 261 101 0 chr11 13624797 13624866 -137158687 + L2 LINE L2 3238 3313 0 804 249 173 25 chr11 13625297 13625655 -137157898 - L2 LINE L2 -30 3283 2873 35 24 0 0 chr11 13625773 13625815 -137157738 + AT_rich Low_complexity Low_complexity 1 42 0 387 241 29 95 chr11 13626356 13626493 -137157060 + MIR3 SINE MIR 15 142 -66 308 253 13 13 chr11 13627447 13627526 -137156027 + L2 LINE L2 3223 3301 -12 486 236 57 48 chr11 13627744 13628058 -137155495 - L1M4 LINE L1 -2736 3410 3094 1819 180 0 10 chr11 13628086 13628391 -137155162 - AluJo SINE Alu -2 310 9 5532 194 65 3 chr11 13628459 13629575 -137153978 + MSTB-int LTR MaLR 466 1651 0 2390 183 9 12 chr11 13629575 13630002 -137153551 + MSTB LTR MaLR 1 426 0 726 211 106 0 chr11 13630084 13630264 -137153289 - L2 LINE L2 0 3313 3115 3091 252 23 8 chr11 13630366 13631289 -137152264 - L1PA15-16 LINE L1 -3388 3461 2525 416 79 13 13 chr11 13631280 13631356 -137152197 + L1PA15-16 LINE L1 2111 2186 -4663 * 2369 62 12 0 chr11 13631369 13631706 -137151847 - L1PA15-16 LINE L1 -4752 2097 1757 4865 148 3 5 chr11 13631711 13632475 -137151078 - L1PA15-16 LINE L1 -6076 773 12 639 223 22 44 chr11 13632469 13632698 -137150855 - L1M4 LINE L1 -950 5196 4973 * 1187 226 40 13 chr11 13632678 13633055 -137150498 - L1ME LINE L1 -467 5703 5317 258 152 0 0 chr11 13633077 13633123 -137150430 - MLT1G LTR MaLR -5 585 540 321 209 114 19 chr11 13633269 13633374 -137150179 - MLT1H LTR MaLR -434 115 1 1138 256 77 59 chr11 13633376 13633540 -137150013 - L1ME LINE L1 -924 5222 5062 2191 107 17 0 chr11 13633540 13633830 -137149723 + AluSg SINE Alu 1 295 -15 1138 256 77 59 chr11 13633830 13634458 -137149095 - L1ME LINE L1 -1084 5062 4416 21 57 0 0 chr11 13634468 13634503 -137149050 + AT_rich Low_complexity Low_complexity 1 35 0 270 258 97 32 chr11 13634596 13634689 -137148864 + MLT2E LTR ERVL 57 155 -473 181 301 39 68 chr11 13634786 13634889 -137148664 - L3 LINE CR1 -1418 159 60 545 299 89 82 chr11 13635000 13635485 -137148068 + L2 LINE L2 2806 3293 -20 215 290 127 68 chr11 13635510 13636013 -137147540 - L2 LINE L2 -1242 2072 1540 454 340 24 15 chr11 13636061 13636267 -137147286 - MIR SINE MIR -54 208 1 224 298 57 50 chr11 13636747 13636888 -137146665 - L2 LINE L2 -2570 744 603 572 258 129 58 chr11 13637330 13637464 -137146089 + MIR SINE MIR 6 129 -133 1636 163 33 39 chr11 13637464 13637771 -137145782 + AluJb SINE Alu 1 305 -7 572 258 129 58 chr11 13637771 13637876 -137145677 + MIR SINE MIR 129 262 0 1349 146 13 4 chr11 13638188 13638427 -137145126 + L1MB3 LINE L1 5935 6175 -8 248 269 45 45 chr11 13638646 13638780 -137144773 + L1ME LINE L1 5518 5651 -470 1782 161 4 4 chr11 13638782 13639062 -137144491 + AluSx SINE Alu 1 280 -32 1301 92 58 0 chr11 13639062 13639235 -137144318 + AluY SINE Alu 97 279 -32 261 0 0 0 chr11 13639250 13639279 -137144274 + (TA)n Simple_repeat Simple_repeat 2 30 0 28 48 0 0 chr11 13640167 13640209 -137143344 + AT_rich Low_complexity Low_complexity 1 42 0 618 150 30 8 chr11 13640314 13640447 -137143106 + L1MB2 LINE L1 5935 6070 -101 238 292 104 58 chr11 13640469 13640623 -137142930 - L2 LINE L2 -236 3036 2876 191 250 12 0 chr11 13640859 13640943 -137142610 + GA-rich Low_complexity Low_complexity 2 86 0 399 296 75 80 chr11 13641226 13641791 -137141762 - L2 LINE L2 -85 3187 2635 338 261 140 7 chr11 13643547 13643727 -137139826 + MIR SINE MIR 63 262 0 252 301 92 6 chr11 13643967 13644130 -137139423 + L2 LINE L2 2703 2879 -435 266 369 51 41 chr11 13644157 13644352 -137139201 + L2 LINE L2 2982 3178 -94 332 123 0 31 chr11 13644435 13644500 -137139053 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 404 245 176 15 chr11 13645288 13645492 -137138061 + MIR SINE MIR 20 256 -6 430 258 0 41 chr11 13645627 13645724 -137137829 - L2 LINE L2 0 3272 3180 994 182 16 31 chr11 13645789 13645981 -137137572 - MER5A DNA MER1_type 0 189 1 436 335 81 0 chr11 13646604 13646789 -137136764 + MIR SINE MIR 49 248 -14 209 348 127 17 chr11 13646978 13647159 -137136394 - L2 LINE L2 -1335 1979 1779 2177 98 3 0 chr11 13647191 13647478 -137136075 + AluSp SINE Alu 1 288 -25 213 39 0 0 chr11 13648248 13648274 -137135279 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2008 131 3 10 chr11 13648547 13648845 -137134708 - AluSq SINE Alu -17 296 1 470 270 40 81 chr11 13648988 13649162 -137134391 + MIR SINE MIR 16 182 -80 871 257 40 32 chr11 13649164 13649417 -137134136 + MIR SINE MIR 8 262 0 186 143 0 0 chr11 13649482 13649517 -137134036 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 27 0 0 0 chr11 13650786 13650813 -137132740 + AT_rich Low_complexity Low_complexity 1 27 0 240 111 0 0 chr11 13651423 13651468 -137132085 + (ATTG)n Simple_repeat Simple_repeat 4 48 0 498 313 128 4 chr11 13651471 13651714 -137131839 - L2 LINE L2 -20 3293 3021 237 197 71 79 chr11 13652000 13652127 -137131426 - L2 LINE L2 -211 3061 2936 670 113 35 21 chr11 13652127 13652269 -137131284 + CT-rich Low_complexity Low_complexity 3 146 0 558 192 10 0 chr11 13652883 13652987 -137130566 - Tigger5 DNA MER2_type 0 2323 2219 246 245 0 0 chr11 13652982 13653035 -137130518 - Tigger5 DNA MER2_type -2270 53 1 * 397 294 125 19 chr11 13653035 13653239 -137130314 + L1ME4a LINE L1 5715 5896 -225 776 188 16 0 chr11 13653239 13653367 -137130186 + FLAM_A SINE Alu 1 130 -3 397 294 125 19 chr11 13653367 13653530 -137130023 + L1ME4a LINE L1 5896 6121 0 507 298 50 22 chr11 13654060 13654382 -137129171 - L1M4 LINE L1 -1083 5063 4733 320 310 0 0 chr11 13654985 13655072 -137128481 + MER5B DNA MER1_type 68 154 -24 210 294 44 0 chr11 13655120 13655188 -137128365 + MIR SINE MIR 111 181 -81 * 856 241 5 0 chr11 13655186 13655377 -137128176 - MIR SINE MIR 0 262 71 191 247 178 0 chr11 13655400 13655473 -137128080 + MIR SINE MIR 167 252 -10 1128 302 186 8 chr11 13655839 13656581 -137126972 - L3 LINE CR1 -100 1477 604 695 228 56 0 chr11 13656632 13656812 -137126741 + MIR SINE MIR 52 241 -21 578 262 87 0 chr11 13656834 13656983 -137126570 - L3 LINE CR1 -982 595 434 23 33 0 0 chr11 13658444 13658474 -137125079 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 13658597 13658625 -137124928 + GC_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr11 13658700 13658735 -137124818 + GC_rich Low_complexity Low_complexity 1 35 0 342 333 21 36 chr11 13660611 13660803 -137122750 + MIR3 SINE MIR 17 205 -3 295 265 191 5 chr11 13661620 13661809 -137121744 + MIR SINE MIR 15 238 -24 1746 166 28 0 chr11 13662229 13662518 -137121035 - AluJb SINE Alu -15 297 1 681 278 43 17 chr11 13662878 13663112 -137120441 + MIR SINE MIR 14 253 -9 200 127 309 0 chr11 13663998 13664053 -137119500 + MIR SINE MIR 82 153 -109 570 225 151 23 chr11 13664062 13664280 -137119273 - MIR SINE MIR 0 262 17 3801 103 14 4 chr11 13664410 13664963 -137118590 + L1PA16 LINE L1 5599 6157 -9 3786 181 23 74 chr11 13664972 13665544 -137118009 + L1MB5 LINE L1 5114 5714 -620 1667 180 0 46 chr11 13665544 13665850 -137117703 + AluJo SINE Alu 1 292 -20 3786 181 23 74 chr11 13665850 13666405 -137117148 + L1MB5 LINE L1 5714 6334 0 380 200 139 9 chr11 13666403 13666518 -137117035 + L1MB4 LINE L1 6049 6178 -2 * 1072 274 80 38 chr11 13666527 13666954 -137116599 + L1ME3A LINE L1 5691 6135 -35 1857 149 3 3 chr11 13667241 13667523 -137116030 - AluJb SINE Alu -30 282 1 691 249 81 23 chr11 13668074 13668295 -137115258 + MLT1J2 LTR MaLR 5 238 -212 473 285 86 19 chr11 13668703 13668970 -137114583 + L1ME4a LINE L1 5619 5903 -218 606 152 72 58 chr11 13669443 13669581 -137113972 + AluJb SINE Alu 173 312 0 234 270 171 0 chr11 13670318 13670429 -137113124 + L2 LINE L2 3184 3313 0 379 283 136 11 chr11 13670830 13671021 -137112532 - MIR SINE MIR -34 228 14 337 267 115 30 chr11 13671421 13671586 -137111967 + MIR SINE MIR 8 186 -76 310 263 53 0 chr11 13671684 13671779 -137111774 + L1MC4a LINE L1 5542 5641 -480 356 237 112 26 chr11 13671811 13671963 -137111590 + L1MC4a LINE L1 5723 5887 -1921 282 29 0 0 chr11 13671964 13671999 -137111554 + (CA)n Simple_repeat Simple_repeat 1 35 0 286 359 75 35 chr11 13672087 13672405 -137111148 + L2 LINE L2 2887 3217 -55 364 270 47 62 chr11 13673496 13673707 -137109846 - L2 LINE L2 -8 3305 3098 1562 337 84 24 chr11 13673956 13675207 -137108346 - L2 LINE L2 -199 3073 1747 242 258 210 44 chr11 13675329 13675558 -137107995 - L2 LINE L2 -2808 506 240 2112 99 21 7 chr11 13675562 13675871 -137107682 + AluSc SINE Alu 1 309 0 259 311 92 8 chr11 13676926 13677045 -137106508 - L2 LINE L2 -229 3043 2915 258 286 57 19 chr11 13677174 13677279 -137106274 - L2 LINE L2 -490 2824 2716 385 249 40 79 chr11 13677778 13677905 -137105648 + MIR SINE MIR 37 157 -105 2267 101 0 3 chr11 13677905 13678201 -137105352 + AluSq SINE Alu 3 297 -16 385 249 40 79 chr11 13678201 13678250 -137105303 + MIR SINE MIR 157 206 -56 264 282 13 13 chr11 13679854 13679932 -137103621 + CT-rich Low_complexity Low_complexity 3 80 0 418 242 46 134 chr11 13680185 13680319 -137103234 + MIR SINE MIR 21 134 -128 1778 178 20 0 chr11 13680319 13680611 -137102942 + AluJb SINE Alu 1 298 -14 418 242 46 134 chr11 13680611 13680670 -137102883 + MIR SINE MIR 134 197 -65 4295 64 2 6 chr11 13680932 13681478 -137102075 + L1PA8 LINE L1 5629 6172 0 25 0 0 0 chr11 13681507 13681532 -137102021 + AT_rich Low_complexity Low_complexity 1 25 0 1932 128 69 3 chr11 13682974 13683263 -137100290 - AluJo SINE Alu -4 308 1 297 0 0 0 chr11 13683457 13683490 -137100063 + (TG)n Simple_repeat Simple_repeat 2 34 0 2307 81 3 0 chr11 13683512 13683796 -137099757 - AluSp SINE Alu -28 285 1 228 182 0 0 chr11 13686066 13686110 -137097443 + (CA)n Simple_repeat Simple_repeat 2 45 0 344 119 17 0 chr11 13686118 13686177 -137097376 + (TA)n Simple_repeat Simple_repeat 1 60 0 1015 258 133 28 chr11 13686335 13687111 -137096442 + L2 LINE L2 2451 3313 0 376 307 40 7 chr11 13687713 13687863 -137095690 - MER117 DNA MER1_type -37 160 6 251 208 0 0 chr11 13689346 13689399 -137094154 - L2 LINE L2 -3 3269 3217 499 253 114 6 chr11 13689485 13689651 -137093902 + MIR SINE MIR 15 198 -64 516 279 137 24 chr11 13690354 13690691 -137092862 + L1MC4 LINE L1 7656 8030 -12 383 282 25 43 chr11 13690935 13691102 -137092451 - MIR SINE MIR -57 205 42 1314 272 21 3 chr11 13691137 13691472 -137092081 - LTR16C LTR ERVL 0 491 151 638 310 40 35 chr11 13692773 13692999 -137090554 - MIR SINE MIR -15 247 21 2010 161 62 5 chr11 13693048 13693281 -137090272 - L1MB4 LINE L1 -1 6179 5961 2163 123 7 0 chr11 13693281 13693583 -137089970 + AluSq SINE Alu 1 304 -9 2010 161 62 5 chr11 13693583 13693772 -137089781 - L1MB4 LINE L1 -219 5961 5733 393 247 142 12 chr11 13694212 13694374 -137089179 - MIR SINE MIR -7 255 73 484 307 80 13 chr11 13694380 13694618 -137088935 - L1ME LINE L1 -308 5813 5560 183 100 0 0 chr11 13694723 13694753 -137088800 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 403 225 80 152 chr11 13695017 13695457 -137088096 + L1ME4a LINE L1 5641 6048 -73 872 252 20 20 chr11 13696139 13696385 -137087168 + MIR SINE MIR 7 252 -10 438 202 20 10 chr11 13696675 13696774 -137086779 - MIR SINE MIR -69 193 94 1796 159 33 0 chr11 13697416 13697687 -137085866 + AluJb SINE Alu 5 284 -28 405 0 0 0 chr11 13697687 13697732 -137085821 + (CA)n Simple_repeat Simple_repeat 2 46 0 2360 109 0 0 chr11 13698356 13698660 -137084893 - AluSx SINE Alu -8 304 1 561 203 0 0 chr11 13698702 13698809 -137084744 - MER5A DNA MER1_type -79 110 4 214 312 0 0 chr11 13698981 13699058 -137084495 + MIR SINE MIR 175 251 -11 478 260 8 16 chr11 13699564 13699691 -137083862 + L2 LINE L2 3188 3313 0 354 193 35 61 chr11 13699743 13699857 -137083696 + MIR SINE MIR 36 146 -62 378 275 78 73 chr11 13700532 13700750 -137082803 - MIR SINE MIR -10 252 34 234 258 99 60 chr11 13700948 13701099 -137082454 - MIR SINE MIR -30 232 76 367 286 101 73 chr11 13701504 13701752 -137081801 - MIR SINE MIR 0 262 8 222 200 100 14 chr11 13701882 13701952 -137081601 - MIR SINE MIR -62 200 125 1421 127 0 0 chr11 13702304 13702501 -137081052 + AluSg/x SINE Alu 84 280 -32 204 40 0 0 chr11 13702501 13702526 -137081027 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 22 35 0 0 chr11 13702836 13702865 -137080688 + AT_rich Low_complexity Low_complexity 1 29 0 914 155 0 0 chr11 13703063 13703205 -137080348 - FLAM_C SINE Alu -1 142 1 1142 194 138 3 chr11 13703350 13703633 -137079920 + MER33 DNA MER1_type 3 323 -1 784 180 112 0 chr11 13703906 13704067 -137079486 + MIR SINE MIR 36 214 -48 334 302 35 53 chr11 13704116 13704287 -137079266 - L1ME LINE L1 -690 5432 5267 259 340 0 30 chr11 13704733 13704833 -137078720 + MIR SINE MIR 34 130 -132 266 254 40 54 chr11 13705121 13705293 -137078260 - MIR SINE MIR -79 129 19 705 279 29 33 chr11 13705339 13705583 -137077970 + MIR SINE MIR 2 244 -18 2037 142 6 3 chr11 13706352 13706663 -137076890 - AluSx SINE Alu 0 312 1 762 274 48 36 chr11 13706982 13707230 -137076323 - MIR SINE MIR 0 262 12 264 315 14 0 chr11 13707434 13707507 -137076046 - L2 LINE L2 -30 3283 3210 21 0 0 0 chr11 13708334 13708355 -137075198 + AT_rich Low_complexity Low_complexity 1 21 0 701 205 0 0 chr11 13708355 13708472 -137075081 - FLAM_C SINE Alu -24 119 3 265 274 41 0 chr11 13708792 13708865 -137074688 + L2 LINE L2 3196 3271 -1 541 321 47 22 chr11 13709243 13709496 -137074057 - MIR SINE MIR -10 252 1 279 264 46 92 chr11 13709687 13709861 -137073692 + L2 LINE L2 2943 3108 -164 436 295 22 22 chr11 13710602 13710741 -137072812 + MIR SINE MIR 14 152 -110 431 185 37 0 chr11 13710746 13710827 -137072726 + Tigger3(Golem) DNA MER2_type 3 86 -2943 4340 116 52 13 chr11 13710912 13711629 -137071924 + Tigger3(Golem) DNA MER2_type 2278 3022 -7 460 237 51 17 chr11 13711679 13711797 -137071756 - MIR SINE MIR -105 157 36 903 222 143 17 chr11 13711829 13712059 -137071494 + MIR SINE MIR 2 260 -2 419 284 182 33 chr11 13712161 13712303 -137071250 - L3 LINE CR1 -307 1270 1151 1119 169 42 33 chr11 13712303 13712516 -137071037 - MER20 DNA MER1_type -1 218 4 419 284 182 33 chr11 13712516 13712708 -137070845 - L3 LINE CR1 -426 1151 886 183 366 158 12 chr11 13712867 13713031 -137070522 + L2 LINE L2 2993 3180 -92 268 290 30 20 chr11 13713497 13713597 -137069956 + MIR SINE MIR 37 137 -125 1969 196 62 3 chr11 13713609 13713977 -137069576 - MSTD LTR MaLR -4 392 3 249 353 39 0 chr11 13713991 13714093 -137069460 + MIR SINE MIR 155 260 -2 499 350 101 53 chr11 13714257 13714694 -137068859 - L2 LINE L2 0 3272 2815 871 249 145 39 chr11 13714963 13715034 -137068519 + L2 LINE L2 2651 2713 -600 2553 137 77 20 chr11 13715034 13715437 -137068116 - MSTC LTR MaLR 0 428 3 871 249 145 39 chr11 13715437 13715913 -137067640 + L2 LINE L2 2713 3251 -62 315 0 0 0 chr11 13716247 13716282 -137067271 + (TTA)n Simple_repeat Simple_repeat 1 35 0 552 296 91 14 chr11 13716298 13716518 -137067035 - MIR SINE MIR -18 244 8 201 244 0 0 chr11 13716933 13716978 -137066575 - MIR SINE MIR -56 206 162 232 339 86 0 chr11 13717204 13717326 -137066227 - MIR SINE MIR -63 145 14 2467 52 3 13 chr11 13717959 13718264 -137065289 + AluY SINE Alu 10 311 0 335 268 167 26 chr11 13718331 13718695 -137064858 - MLT1J LTR MaLR 0 511 39 331 259 100 62 chr11 13718959 13719135 -137064418 + MIR3 SINE MIR 5 181 -81 397 258 98 8 chr11 13719994 13720126 -137063427 + L1ME4a LINE L1 5975 6118 -3 255 314 67 0 chr11 13720888 13720993 -137062560 - L2 LINE L2 -19 3294 3183 216 191 0 0 chr11 13720994 13721036 -137062517 + GA-rich Low_complexity Low_complexity 1 42 0 182 246 35 18 chr11 13721127 13721184 -137062369 - MIR SINE MIR -133 75 18 21 36 0 0 chr11 13722788 13722816 -137060737 + AT_rich Low_complexity Low_complexity 1 28 0 286 299 106 29 chr11 13723057 13723264 -137060289 - L2 LINE L2 -556 2758 2536 204 346 0 29 chr11 13723338 13723442 -137060111 + L2 LINE L2 2890 2990 -282 * 334 265 77 8 chr11 13723423 13723540 -137060013 + MIR SINE MIR 60 184 -78 587 224 148 19 chr11 13723562 13723772 -137059781 + L2 LINE L2 2614 2850 -464 216 299 179 60 chr11 13723773 13723890 -137059663 - MER91C DNA MER1_type 0 140 10 1204 234 158 31 chr11 13723893 13724191 -137059362 + L2 LINE L2 2842 3210 -103 208 27 54 27 chr11 13724191 13724228 -137059325 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1204 234 158 31 chr11 13724228 13724348 -137059205 + L2 LINE L2 3210 3313 0 191 313 47 116 chr11 13724442 13724717 -137058836 + L2 LINE L2 3006 3261 -11 244 317 58 8 chr11 13725860 13725980 -137057573 - L1ME LINE L1 -307 5814 5689 2072 125 4 0 chr11 13726616 13726922 -137056631 - AluSc SINE Alu 0 307 1 918 215 77 13 chr11 13727426 13727659 -137055894 - MIR SINE MIR -14 248 1 709 294 34 8 chr11 13728682 13728917 -137054636 - MIR SINE MIR 0 262 22 562 296 115 12 chr11 13728922 13729175 -137054378 - L2 LINE L2 0 3313 3035 1141 234 96 32 chr11 13729195 13729571 -137053982 - MLT1J2 LTR MaLR -29 421 22 1017 243 161 24 chr11 13729593 13730093 -137053460 - L2 LINE L2 -303 3010 2440 212 337 61 10 chr11 13730878 13730976 -137052577 - L2 LINE L2 -15 3257 3155 1524 246 12 10 chr11 13731024 13731435 -137052118 - L1M4 LINE L1 -1732 4414 4003 1496 231 90 38 chr11 13731433 13731832 -137051721 - L1MDa LINE L1 -6102 438 19 * 185 318 0 56 chr11 13732323 13732430 -137051123 - L2 LINE L2 -327 2986 2886 427 228 118 84 chr11 13732530 13732793 -137050760 - MLT1K LTR MaLR -176 412 141 190 316 89 32 chr11 13732925 13733083 -137050470 - L2 LINE L2 -568 2746 2580 1797 213 197 56 chr11 13733583 13734334 -137049219 - L2 LINE L2 -557 2757 1901 216 179 0 0 chr11 13734534 13734573 -137048980 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 1196 168 5 5 chr11 13734587 13734796 -137048757 + L1MB3 LINE L1 5973 6181 -2 350 272 48 40 chr11 13735275 13735400 -137048153 - L2 LINE L2 -1 3312 3187 1413 171 0 0 chr11 13736213 13736430 -137047123 - MER58A DNA MER1_type -6 218 2 347 292 120 19 chr11 13738513 13738722 -137044831 - MIR SINE MIR -13 249 20 1098 147 9 76 chr11 13738999 13739224 -137044329 - MER20 DNA MER1_type 0 219 10 237 286 31 31 chr11 13739324 13739422 -137044131 - MIR SINE MIR -90 172 75 432 296 67 64 chr11 13739425 13739696 -137043857 + L2 LINE L2 2782 3073 -240 820 248 48 32 chr11 13739949 13740199 -137043354 - MIR SINE MIR -4 258 5 823 183 0 21 chr11 13741153 13741295 -137042258 + FRAM SINE Alu 23 161 -15 533 157 49 0 chr11 13741299 13741401 -137042152 + L1ME1 LINE L1 5189 5295 -851 2540 215 48 45 chr11 13741415 13742126 -137041427 + L1ME1 LINE L1 5355 6067 -99 283 274 69 29 chr11 13742068 13742142 -137041411 + L1MA10 LINE L1 6170 6251 -83 * 276 30 0 0 chr11 13742142 13742175 -137041378 + (CA)n Simple_repeat Simple_repeat 2 34 0 283 274 69 29 chr11 13742175 13742202 -137041351 + L1MA10 LINE L1 6251 6275 -59 320 86 0 121 chr11 13742835 13742893 -137040660 + U2 snRNA snRNA 1 51 -137 1136 190 30 9 chr11 13743150 13743382 -137040171 + L1MD2 LINE L1 5760 5996 -363 361 275 0 0 chr11 13743515 13743595 -137039958 + L2 LINE L2 3234 3313 0 1975 89 0 0 chr11 13743683 13743929 -137039624 + AluSc SINE Alu 32 277 -32 254 143 20 0 chr11 13743929 13743978 -137039575 + (CAGA)n Simple_repeat Simple_repeat 2 51 0 826 179 0 0 chr11 13745099 13745222 -137038331 - FLAM_C SINE Alu -19 124 2 1962 152 0 19 chr11 13745337 13745652 -137037901 + AluJb SINE Alu 1 309 -3 1939 128 0 41 chr11 13745966 13746286 -137037267 + AluJo SINE Alu 6 312 0 473 299 109 65 chr11 13748110 13748495 -137035058 - L3 LINE CR1 -460 1117 716 324 274 26 21 chr11 13748513 13748626 -137034927 + MIR SINE MIR 32 147 -67 26 0 0 0 chr11 13750050 13750076 -137033477 + AT_rich Low_complexity Low_complexity 1 26 0 215 318 12 47 chr11 13751274 13751359 -137032194 - MIR3 SINE MIR -27 181 100 2068 205 84 91 chr11 13751548 13752340 -137031213 - L1M4 LINE L1 -1323 4823 4038 379 250 94 0 chr11 13752345 13752441 -137031112 - L1M4 LINE L1 -2368 3778 3674 371 219 17 17 chr11 13752441 13752560 -137030993 - L1M4 LINE L1 -3195 2951 2833 * 1165 253 102 0 chr11 13752559 13752963 -137030590 - L1MEc LINE L1 -2482 3733 3289 2562 223 50 51 chr11 13752964 13753783 -137029770 - L1MEc LINE L1 -3083 3132 2335 1623 119 0 4 chr11 13753783 13754030 -137029523 - AluJb SINE Alu 0 304 59 2562 223 50 51 chr11 13754030 13754739 -137028814 - L1MEc LINE L1 -3880 2335 1627 2978 263 64 21 chr11 13754870 13755137 -137028416 - L1MEc LINE L1 -4916 1299 1045 1102 132 22 44 chr11 13755137 13755364 -137028189 - L1MA5 LINE L1 -2 6298 6077 2978 263 64 21 chr11 13755364 13756341 -137027212 - L1MEc LINE L1 -5170 1045 40 774 184 178 0 chr11 13757977 13758140 -137025413 - MER58A DNA MER1_type -15 209 18 217 310 182 0 chr11 13758477 13758639 -137024914 - MIR SINE MIR -6 202 1 336 103 0 0 chr11 13759121 13759179 -137024374 + (GA)n Simple_repeat Simple_repeat 1 58 0 309 26 0 0 chr11 13759181 13759219 -137024334 + (TG)n Simple_repeat Simple_repeat 2 39 0 208 178 56 22 chr11 13759318 13759408 -137024145 + (TATAA)n Simple_repeat Simple_repeat 1 93 0 1004 322 157 17 chr11 13759415 13760046 -137023507 + L2 LINE L2 1723 2441 -873 216 217 50 67 chr11 13760052 13760112 -137023441 + L2 LINE L2 3214 3272 0 1621 243 101 20 chr11 13760229 13760758 -137022795 + MLT1G LTR MaLR 32 583 -7 344 341 8 15 chr11 13760768 13760900 -137022653 + L2 LINE L2 2560 2690 -624 1953 216 145 98 chr11 13761024 13762051 -137021502 + L2 LINE L2 2205 3313 0 535 332 103 38 chr11 13762051 13762421 -137021132 + L2 LINE L2 2812 3205 -67 1161 141 15 5 chr11 13762513 13762719 -137020834 + L1PB2 LINE L1 5941 6148 -3 758 168 16 0 chr11 13762972 13763097 -137020456 - FLAM_C SINE Alu -4 129 3 262 233 189 11 chr11 13763694 13763784 -137019769 - L2 LINE L2 0 3313 3208 1593 137 4 0 chr11 13764471 13764728 -137018825 + AluSx SINE Alu 55 312 0 308 388 39 17 chr11 13766012 13766190 -137017363 - MIR3 SINE MIR -8 200 19 2242 100 6 10 chr11 13766617 13766928 -137016625 + AluY SINE Alu 1 310 -1 1383 112 0 0 chr11 13766928 13767115 -137016438 + AluSg/x SINE Alu 126 312 0 739 180 14 0 chr11 13767353 13767492 -137016061 - AluSg/x SINE Alu -6 306 166 317 106 0 0 chr11 13767492 13767539 -137016014 + LTR3b LTR ERVK 7 53 -384 387 216 27 63 chr11 13767741 13767852 -137015701 + L2 LINE L2 3155 3261 -11 232 273 61 15 chr11 13767895 13767961 -137015592 - L2 LINE L2 -43 3270 3202 387 0 0 0 chr11 13769290 13769333 -137014220 + (CA)n Simple_repeat Simple_repeat 1 43 0 330 308 13 32 chr11 13770276 13770432 -137013121 + L2 LINE L2 2930 3082 -190 189 345 21 49 chr11 13770451 13770593 -137012960 - MIR SINE MIR -8 254 117 185 289 149 61 chr11 13771052 13771280 -137012273 + L2 LINE L2 2927 3174 -98 482 309 92 23 chr11 13771961 13772178 -137011375 + MIR SINE MIR 27 258 -4 939 248 75 16 chr11 13772918 13773240 -137010313 + MER102b DNA MER1_type 1 341 0 1620 152 0 0 chr11 13773489 13773719 -137009834 - AluSx SINE Alu -81 231 2 24 53 0 0 chr11 13774656 13774694 -137008859 + AT_rich Low_complexity Low_complexity 1 38 0 353 279 116 7 chr11 13775702 13775849 -137007704 - MIR SINE MIR -32 230 68 197 152 0 0 chr11 13776014 13776047 -137007506 - MIR SINE MIR -146 62 30 250 178 0 41 chr11 13776947 13777020 -137006533 + CT-rich Low_complexity Low_complexity 4 73 0 516 158 0 0 chr11 13777020 13777102 -137006451 - AluJ/FLAM SINE Alu -230 82 1 874 178 0 0 chr11 13777103 13777238 -137006315 - FRAM SINE Alu -22 154 20 244 320 148 33 chr11 13777925 13778047 -137005506 - L2 LINE L2 -1 3271 3136 272 266 109 47 chr11 13778322 13778450 -137005103 + L2 LINE L2 2387 2522 -792 189 0 0 0 chr11 13779066 13779087 -137004466 + (CAAAA)n Simple_repeat Simple_repeat 4 24 0 216 250 160 20 chr11 13779135 13779235 -137004318 - MIR SINE MIR -45 217 104 1811 210 20 13 chr11 13779427 13779818 -137003735 - MSTD LTR MaLR -2 394 1 349 300 66 30 chr11 13780641 13780983 -137002570 + L1ME LINE L1 49 410 -5660 189 132 38 19 chr11 13781495 13781548 -137002005 + (TA)n Simple_repeat Simple_repeat 1 54 0 291 271 79 41 chr11 13781636 13781923 -137001630 - L1MC4 LINE L1 -169 7678 7322 42552 37 2 1 chr11 13781967 13788117 -136995436 + L1PA4 LINE L1 1 6155 0 1358 162 179 23 chr11 13788120 13788466 -136995087 - MSTA LTR MaLR -27 401 2 348 259 38 35 chr11 13788511 13788721 -136994832 - L1MC4 LINE L1 -743 7218 7086 333 339 39 8 chr11 13788722 13788849 -136994704 - MIR SINE MIR -107 155 25 42 36 0 0 chr11 13788859 13788915 -136994638 + AT_rich Low_complexity Low_complexity 1 56 0 216 0 0 0 chr11 13789805 13789829 -136993724 + (T)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr11 13790060 13790086 -136993467 + AT_rich Low_complexity Low_complexity 1 26 0 508 306 43 17 chr11 13790323 13790724 -136992829 - L1MC4 LINE L1 -364 5757 5532 703 272 61 29 chr11 13791668 13791914 -136991639 + MIR SINE MIR 2 255 -7 312 316 111 46 chr11 13792558 13792789 -136990764 - MIR SINE MIR -7 255 13 296 357 20 0 chr11 13793107 13793205 -136990348 + MIR SINE MIR 22 121 -87 332 307 57 7 chr11 13793322 13793462 -136990091 + MIR SINE MIR 46 192 -70 263 262 116 113 chr11 13793807 13794038 -136989515 - L2 LINE L2 -18 3254 3020 2041 138 3 25 chr11 13794038 13794356 -136989197 - AluJo SINE Alu -1 311 1 263 262 116 113 chr11 13794356 13794452 -136989101 - L2 LINE L2 -252 3020 2926 955 273 104 75 chr11 13794535 13794884 -136988669 + L2 LINE L2 2214 2551 -762 2172 120 0 0 chr11 13794884 13795176 -136988377 - AluSx SINE Alu -20 292 1 750 125 0 0 chr11 13795182 13795302 -136988251 - L1MA5A LINE L1 -1 6296 6177 955 273 104 75 chr11 13795302 13796011 -136987542 + L2 LINE L2 2555 3287 -26 269 355 57 16 chr11 13796072 13796317 -136987236 - L2 LINE L2 -529 2785 2531 228 111 0 0 chr11 13796691 13796727 -136986826 + (T)n Simple_repeat Simple_repeat 1 36 0 342 0 0 0 chr11 13796917 13796955 -136986598 + (TG)n Simple_repeat Simple_repeat 1 38 0 31 26 0 0 chr11 13797095 13797133 -136986420 + AT_rich Low_complexity Low_complexity 1 38 0 333 22 0 0 chr11 13797136 13797182 -136986371 - HY1 scRNA scRNA -4 108 63 2257 99 0 3 chr11 13797182 13797475 -136986078 + AluSc SINE Alu 1 292 -17 437 289 51 19 chr11 13798388 13798544 -136985009 + MIR SINE MIR 45 205 -57 469 294 0 8 chr11 13798579 13798705 -136984848 - L2 LINE L2 -9 3304 3180 317 271 37 58 chr11 13800498 13800686 -136982867 - MIR3 SINE MIR -11 197 14 2340 105 0 0 chr11 13802537 13802841 -136980712 - AluSx SINE Alu -8 304 1 359 292 78 88 chr11 13803138 13803549 -136980004 - L3 LINE CR1 -3 1574 1168 815 259 26 17 chr11 13803575 13803807 -136979746 - MIR SINE MIR -10 252 19 330 296 7 37 chr11 13804696 13804831 -136978722 + MIR SINE MIR 98 228 -34 799 238 112 27 chr11 13804982 13805276 -136978277 + MER20B DNA MER1_type 4 322 -461 533 121 166 108 chr11 13805547 13805704 -136977849 + MER21A LTR ERV1 14 179 -752 * 756 198 31 25 chr11 13805675 13805837 -136977716 + MER39 LTR ERV1 219 381 -326 1272 177 27 9 chr11 13806084 13806304 -136977249 + MER58A DNA MER1_type 1 224 0 1798 266 77 34 chr11 13806763 13807644 -136975909 - L2 LINE L2 -168 3145 2209 292 226 0 0 chr11 13807754 13807816 -136975737 - L2 LINE L2 -2 3311 3250 25 0 0 0 chr11 13807873 13807898 -136975655 + AT_rich Low_complexity Low_complexity 1 25 0 2177 81 4 4 chr11 13808008 13808281 -136975272 - AluSg SINE Alu -37 273 1 326 305 76 36 chr11 13808523 13808746 -136974807 - L3 LINE CR1 -1 1576 1345 798 194 72 22 chr11 13808761 13808941 -136974612 - MER20 DNA MER1_type -30 189 1 340 311 82 8 chr11 13809034 13809156 -136974397 - MIR SINE MIR -115 147 17 2121 133 0 3 chr11 13809273 13809573 -136973980 - AluSx SINE Alu -13 299 1 250 329 0 0 chr11 13809747 13809832 -136973721 - L3 LINE CR1 -612 965 881 301 321 130 12 chr11 13810047 13810209 -136973344 - L3 LINE CR1 -1066 511 331 367 302 112 39 chr11 13810954 13811285 -136972268 + L1ME4a LINE L1 5760 6114 -7 663 146 92 0 chr11 13813784 13813914 -136969639 + L1MA5A LINE L1 6146 6287 -10 26 30 0 0 chr11 13813958 13813991 -136969562 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr11 13814093 13814121 -136969432 + AT_rich Low_complexity Low_complexity 1 28 0 440 263 85 71 chr11 13814327 13814551 -136969002 + MLT1J LTR MaLR 92 318 -193 387 233 68 30 chr11 13814709 13814842 -136968711 + L1MC5 LINE L1 7771 7908 -53 311 258 103 10 chr11 13814899 13814996 -136968557 + MIR SINE MIR 57 162 -100 879 190 17 35 chr11 13815586 13815760 -136967793 + AluSc SINE Alu 130 300 -9 413 260 62 23 chr11 13817025 13817202 -136966351 - L1ME4a LINE L1 -6 6115 5932 345 241 231 5 chr11 13817187 13817390 -136966163 - L1ME4a LINE L1 -11 6110 5862 * 289 279 122 45 chr11 13817549 13817836 -136965717 - L1ME4a LINE L1 -581 5581 5273 336 272 0 22 chr11 13817877 13817969 -136965584 + MIR SINE MIR 25 114 -148 469 301 84 10 chr11 13818696 13818899 -136964654 + MIR SINE MIR 33 250 -12 189 214 0 36 chr11 13818983 13819039 -136964514 + L2 LINE L2 2309 2362 -952 212 250 83 0 chr11 13819170 13819242 -136964311 + L2 LINE L2 2482 2559 -755 657 270 216 12 chr11 13819295 13819459 -136964094 + L2 LINE L2 2477 2606 -707 243 0 0 0 chr11 13819459 13819486 -136964067 + (CA)n Simple_repeat Simple_repeat 2 28 0 657 270 216 12 chr11 13819486 13820001 -136963552 + L2 LINE L2 2606 3303 -10 453 250 33 41 chr11 13820892 13821097 -136962456 - MIR SINE MIR -48 214 7 272 183 113 0 chr11 13822596 13822667 -136960886 - MER103 DNA DNA -79 87 9 462 263 34 34 chr11 13822814 13822993 -136960560 + MIR SINE MIR 9 187 -75 636 264 51 32 chr11 13823000 13823216 -136960337 - MIR SINE MIR -1 261 42 404 296 7 14 chr11 13824314 13824456 -136959097 - MER91B DNA MER1_type -42 148 8 413 310 76 5 chr11 13825645 13825829 -136957724 + MIR SINE MIR 10 206 -56 630 148 46 0 chr11 13825951 13826059 -136957494 + MER81 DNA DNA 1 113 -1 403 248 101 19 chr11 13826060 13826283 -136957270 - MLT1I LTR MaLR -33 376 93 1896 151 42 0 chr11 13827140 13827425 -136956128 + AluJo SINE Alu 1 297 -15 1772 170 7 10 chr11 13827594 13827883 -136955670 + AluJb SINE Alu 1 288 -24 643 263 26 0 chr11 13829436 13829626 -136953927 + MIR SINE MIR 67 261 -1 301 247 54 0 chr11 13830526 13830619 -136952934 + L1 LINE L1 4733 4830 -1316 26 74 0 0 chr11 13830766 13830820 -136952733 + AT_rich Low_complexity Low_complexity 1 54 0 419 324 96 18 chr11 13830955 13831227 -136952326 - L2 LINE L2 0 3313 3021 1867 256 205 12 chr11 13831276 13832408 -136951145 - L2 LINE L2 -781 2533 1139 455 302 49 24 chr11 13832557 13832762 -136950791 + L1ME LINE L1 5536 5745 -376 218 235 0 0 chr11 13832828 13832879 -136950674 - MIR SINE MIR -58 150 100 1877 129 52 0 chr11 13839298 13839569 -136943984 + AluSx SINE Alu 12 296 -16 271 278 150 32 chr11 13840079 13840266 -136943287 - MLT1L LTR MaLR -6 609 401 234 248 105 38 chr11 13840361 13840466 -136943087 - MLT1J LTR MaLR -302 209 98 349 325 160 37 chr11 13840589 13840970 -136942583 - L3 LINE CR1 -469 1108 681 205 241 17 0 chr11 13840949 13841007 -136942546 - L2 LINE L2 0 3313 3255 * 844 133 167 7 chr11 13841223 13841373 -136942180 + MER45A DNA AcHobo 5 178 0 198 276 17 0 chr11 13841444 13841502 -136942051 - L2 LINE L2 0 3313 3255 366 23 0 0 chr11 13841579 13841622 -136941931 + (TA)n Simple_repeat Simple_repeat 1 43 0 204 281 116 33 chr11 13842059 13842180 -136941373 - L3 LINE CR1 -1269 308 178 222 172 32 151 chr11 13843330 13843423 -136940130 + MER5B DNA MER1_type 2 83 -95 248 187 80 13 chr11 13843478 13843553 -136940000 + L3 LINE CR1 1429 1508 -69 351 0 0 0 chr11 13843734 13843773 -136939780 + (CA)n Simple_repeat Simple_repeat 2 40 0 218 358 58 7 chr11 13844680 13844817 -136938736 - MIR SINE MIR -70 192 49 2166 138 0 13 chr11 13845870 13846182 -136937371 + AluSx SINE Alu 1 308 -4 918 165 82 0 chr11 13846196 13846378 -136937175 + MIR SINE MIR 41 237 -25 207 298 99 28 chr11 13846721 13846862 -136936691 - L2 LINE L2 -220 3052 2902 263 188 101 0 chr11 13847146 13847215 -136936338 - MER5B DNA MER1_type -20 158 83 963 144 51 20 chr11 13847321 13847517 -136936036 - MER33 DNA MER1_type -262 62 1 633 284 255 28 chr11 13848502 13849263 -136934290 + L2 LINE L2 1862 2795 -519 409 300 77 0 chr11 13849506 13849636 -136933917 + L2 LINE L2 3121 3260 -12 302 362 60 39 chr11 13849643 13850292 -136933261 + L2 LINE L2 2315 2977 -337 2016 147 0 3 chr11 13850965 13851265 -136932288 + AluJb SINE Alu 1 299 -13 402 143 0 0 chr11 13851546 13851602 -136931951 - MER3 DNA MER1_type -153 56 1 326 313 26 0 chr11 13851602 13851717 -136931836 - MIR3 SINE MIR -48 160 43 1669 184 3 20 chr11 13851952 13852246 -136931307 - AluJb SINE Alu -23 289 1 317 317 159 48 chr11 13852897 13853458 -136930095 + L2 LINE L2 2334 2956 -358 268 248 229 9 chr11 13853523 13853628 -136929925 + L2 LINE L2 3143 3270 -2 567 309 180 25 chr11 13855570 13856485 -136927068 + L2 LINE L2 2133 3188 -84 950 176 96 5 chr11 13857550 13857737 -136925816 + MER58A DNA MER1_type 20 223 -1 341 261 219 0 chr11 13858950 13859069 -136924484 + MIR SINE MIR 12 156 -106 5478 159 81 49 chr11 13859988 13860241 -136923312 + Charlie1a DNA MER1_type 34 278 -2483 1617 177 7 18 chr11 13860241 13860524 -136923029 + AluJo SINE Alu 1 280 -32 5478 159 81 49 chr11 13860524 13861637 -136921916 + Charlie1a DNA MER1_type 278 1443 -12 1926 135 21 0 chr11 13866108 13866396 -136917157 - AluSx SINE Alu -18 294 1 784 211 28 64 chr11 13866874 13867020 -136916533 - MER58A DNA MER1_type -2198 222 85 2026 117 38 0 chr11 13867020 13867310 -136916243 - AluSx SINE Alu -11 301 1 784 211 28 64 chr11 13867310 13867381 -136916172 - MER58A DNA MER1_type -2335 85 13 18166 28 0 1 chr11 13867713 13870659 -136912894 - L1PA2 LINE L1 -109 6046 3102 1075 234 30 0 chr11 13870887 13871122 -136912431 + MIR SINE MIR 1 242 -20 323 261 34 0 chr11 13871744 13871832 -136911721 + MLT1J1 LTR MaLR 92 182 -264 1985 110 55 14 chr11 13871961 13872251 -136911302 - AluSx SINE Alu -10 302 1 282 200 35 24 chr11 13872260 13872345 -136911208 + MLT1J1 LTR MaLR 353 438 -8 243 218 0 0 chr11 13872655 13872710 -136910843 + (CATATA)n Simple_repeat Simple_repeat 1 55 0 241 188 25 25 chr11 13872723 13872803 -136910750 + (TA)n Simple_repeat Simple_repeat 1 80 0 469 306 66 31 chr11 13873231 13873808 -136909745 + L1M4 LINE L1 4061 4656 -1490 438 231 6 99 chr11 13873929 13874111 -136909442 + L1M3e LINE L1 1 165 -6865 23 0 0 0 chr11 13875519 13875542 -136908011 + AT_rich Low_complexity Low_complexity 1 23 0 26265 92 7 14 chr11 13875749 13879674 -136903879 + L1PA5 LINE L1 11 3907 -2239 6805 64 3 12 chr11 13879674 13880975 -136902578 + L1PA5 LINE L1 4653 5945 -209 4079 80 267 20 chr11 13880975 13881634 -136901919 + LTR12 LTR ERV1 1 822 -4 6805 64 3 12 chr11 13881634 13881840 -136901713 + L1PA5 LINE L1 5945 6151 -3 343 264 23 16 chr11 13881863 13881992 -136901561 + L1M4 LINE L1 5030 5159 -987 5037 89 22 0 chr11 13882370 13883198 -136900355 - pTR5 LTR ERV1 0 2468 1520 1346 134 26 35 chr11 13883284 13883516 -136900037 - MER30 DNA MER1_type 0 230 1 199 323 217 25 chr11 13883642 13884048 -136899505 - L2 LINE L2 -1 3312 2829 289 299 0 0 chr11 13884900 13884977 -136898576 - L1MA10 LINE L1 -68 6266 6190 1865 166 3 10 chr11 13885371 13885672 -136897881 + AluJb SINE Alu 1 299 -13 353 216 173 15 chr11 13885708 13885968 -136897585 + L1M2 LINE L1 5263 5553 -747 259 389 37 9 chr11 13886750 13886858 -136896695 + L2 LINE L2 3110 3220 -52 298 340 10 0 chr11 13886863 13886963 -136896590 + L2 LINE L2 2909 3009 -263 58 0 0 0 chr11 13887038 13887096 -136896457 + AT_rich Low_complexity Low_complexity 1 58 0 557 162 118 7 chr11 13887123 13887259 -136896294 - MER3 DNA MER1_type -58 151 1 504 301 7 22 chr11 13887353 13887489 -136896064 + L2 LINE L2 3180 3313 0 23 0 0 0 chr11 13888789 13888812 -136894741 + AT_rich Low_complexity Low_complexity 1 23 0 290 24 48 0 chr11 13888988 13889030 -136894523 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chr11 13889721 13889743 -136893810 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 13891445 13891473 -136892080 + AT_rich Low_complexity Low_complexity 1 28 0 30 27 0 0 chr11 13892470 13892507 -136891046 + AT_rich Low_complexity Low_complexity 1 37 0 335 204 118 112 chr11 13892521 13892673 -136890880 - MIR SINE MIR -1 261 109 1017 329 148 19 chr11 13893135 13893667 -136889886 + L3 LINE CR1 968 1568 -9 1402 204 60 11 chr11 13893775 13894059 -136889494 - AluJo SINE Alu -14 298 1 4475 120 49 0 chr11 13894193 13895203 -136888350 - L1PA12 LINE L1 -175 5993 4937 203 267 83 0 chr11 13895455 13895515 -136888038 - L2 LINE L2 0 3313 3249 1917 167 0 13 chr11 13895770 13896070 -136887483 + AluJo SINE Alu 6 301 -11 1340 142 77 8 chr11 13896748 13897009 -136886544 - L1MA10 LINE L1 -7 6327 6049 1920 149 0 0 chr11 13897102 13897391 -136886162 - AluJb SINE Alu -23 289 1 213 39 0 0 chr11 13898187 13898213 -136885340 + (TTA)n Simple_repeat Simple_repeat 1 26 0 989 180 19 167 chr11 13898216 13898527 -136885026 - AluJo SINE Alu -47 265 1 355 349 72 25 chr11 13899623 13899858 -136883695 + MIR SINE MIR 2 247 -15 260 231 0 19 chr11 13900230 13900282 -136883271 + MIR SINE MIR 16 66 -142 497 144 123 55 chr11 13900289 13900435 -136883118 + MER53 DNA DNA 1 156 -33 899 235 75 112 chr11 13900589 13901363 -136882190 + L1ME LINE L1 305 1049 -5021 929 224 76 32 chr11 13901364 13901708 -136881845 + L1ME1 LINE L1 5808 6166 0 250 258 162 12 chr11 13902303 13902470 -136881083 + L1MC/D LINE L1 5703 5894 -1914 201 167 0 0 chr11 13902500 13902536 -136881017 + A-rich Low_complexity Low_complexity 1 36 0 294 314 98 0 chr11 13902887 13902989 -136880564 + L2 LINE L2 3145 3256 -16 2349 107 0 0 chr11 13903009 13903318 -136880235 + AluSg SINE Alu 1 309 -1 726 200 0 21 chr11 13903808 13903953 -136879600 + FLAM_A SINE Alu 1 142 0 37 23 0 0 chr11 13903953 13903997 -136879556 + AT_rich Low_complexity Low_complexity 1 44 0 220 345 62 9 chr11 13903997 13904110 -136879443 - L2 LINE L2 0 3313 3195 2170 104 3 10 chr11 13904124 13904450 -136879103 - AluSq SINE Alu 0 324 1 234 143 0 0 chr11 13905247 13905282 -136878271 + MER3 DNA MER1_type 24 58 -151 365 310 22 15 chr11 13905457 13905725 -136877828 + L1MC4a LINE L1 4777 5046 -1100 296 173 92 75 chr11 13905854 13906027 -136877526 + L1MC4a LINE L1 5254 5429 -2379 709 253 161 82 chr11 13906031 13906116 -136877437 + L1MC4a LINE L1 5476 5553 -2255 2160 131 0 16 chr11 13906116 13906441 -136877112 + AluJb SINE Alu 1 312 0 709 253 161 82 chr11 13906441 13906999 -136876554 + L1MC4a LINE L1 5553 6170 -1638 824 203 0 0 chr11 13907258 13907391 -136876162 + FLAM_A SINE Alu 1 133 0 243 234 63 9 chr11 13907526 13907637 -136875916 - Charlie7 DNA MER1_type -69 2543 2427 185 277 68 95 chr11 13907741 13907889 -136875664 + MIR3 SINE MIR 38 181 -27 2539 11 0 7 chr11 13908263 13908595 -136874958 - AluYa5 SINE Alu 0 330 1 335 315 76 22 chr11 13910483 13910667 -136872886 + Charlie8 DNA MER1_type 63 256 -2161 298 316 77 47 chr11 13913085 13913319 -136870234 - L2 LINE L2 -86 3186 2946 1355 144 166 15 chr11 13914049 13914375 -136869178 + MSTA LTR MaLR 1 375 -53 2283 92 0 0 chr11 13914682 13914976 -136868577 + AluY SINE Alu 1 294 -17 686 108 100 25 chr11 13915447 13915567 -136867986 + FLAM_C SINE Alu 2 130 -3 2333 86 0 7 chr11 13915703 13916004 -136867549 - AluSx SINE Alu -11 301 3 231 88 0 0 chr11 13916019 13916053 -136867500 + (T)n Simple_repeat Simple_repeat 1 34 0 723 182 34 140 chr11 13916377 13916703 -136866850 - MER65-int LTR ERV1 -1922 2958 2009 21 36 0 0 chr11 13916703 13916731 -136866822 + AT_rich Low_complexity Low_complexity 1 28 0 264 197 0 0 chr11 13916842 13916903 -136866650 - MER65-int LTR ERV1 -2378 2493 2433 791 143 13 164 chr11 13917013 13917244 -136866309 - MER65-int LTR ERV1 -2872 3459 3264 1966 167 3 0 chr11 13917375 13917674 -136865879 + AluJo SINE Alu 13 312 0 754 211 0 0 chr11 13917714 13917847 -136865706 - FLAM_C SINE Alu 0 133 1 1163 160 19 61 chr11 13917860 13918123 -136865430 - MER65-int LTR ERV1 -3116 3215 2964 1201 194 87 85 chr11 13918123 13918629 -136864924 + MER84 LTR ERV1 1 507 0 26784 92 19 21 chr11 13918635 13919941 -136863612 + MER84-int LTR ERV1 11 1318 -3636 7294 50 9 0 chr11 13919941 13920882 -136862671 + L1PA8 LINE L1 5221 6169 -3 26784 92 19 21 chr11 13920882 13924253 -136859300 + MER84-int LTR ERV1 1318 4793 -161 2087 146 24 3 chr11 13924290 13924626 -136858927 - MER61A LTR ERV1 0 343 1 752 189 78 28 chr11 13924631 13924879 -136858674 + L1M4 LINE L1 5222 5480 -704 282 93 0 0 chr11 13924883 13924926 -136858627 + Alu SINE Alu 1 43 -260 4076 18 0 0 chr11 13925026 13925517 -136858036 + L1PA2 LINE L1 5661 6151 -4 2082 135 48 28 chr11 13925542 13925935 -136857618 - MSTA LTR MaLR -27 401 1 3202 203 41 22 chr11 13925935 13926815 -136856738 + L1 LINE L1 3791 4687 -1459 387 0 0 0 chr11 13926823 13926866 -136856687 + (TTTTA)n Simple_repeat Simple_repeat 1 43 0 8046 170 26 5 chr11 13926871 13929483 -136854070 - L1PA16 LINE L1 -32 6134 3490 868 224 50 12 chr11 13929482 13929503 -136854050 + L1MC4a LINE L1 4679 4698 -1448 * 3284 21 0 3 chr11 13929503 13929922 -136853631 + L1PA2 LINE L1 5769 6155 0 868 224 50 12 chr11 13929922 13930159 -136853394 + L1MC4a LINE L1 4698 4947 -1199 1352 244 19 27 chr11 13931140 13931509 -136852044 - MLT1F LTR MaLR 0 542 217 4375 173 43 25 chr11 13931537 13932403 -136851150 - L1MB8 LINE L1 0 6178 5282 2003 113 18 0 chr11 13932403 13932713 -136850840 - AluSx SINE Alu 0 316 2 4375 173 43 25 chr11 13932713 13933043 -136850510 - L1MB8 LINE L1 -896 5282 4959 322 288 92 16 chr11 13933049 13933239 -136850314 - MLT1G1 LTR MaLR -393 137 1 222 322 0 23 chr11 13933372 13933459 -136850094 + MIR SINE MIR 149 233 -29 1656 241 89 45 chr11 13933464 13933480 -136850073 + L1MC4a LINE L1 5321 5335 -965 2579 117 5 5 chr11 13933480 13933855 -136849698 + THE1C LTR MaLR 1 375 0 1656 241 89 45 chr11 13933855 13934154 -136849399 + L1MC4a LINE L1 5335 5107 -1193 2317 127 28 19 chr11 13934154 13934515 -136849038 + THE1B LTR MaLR 1 364 0 1656 241 89 45 chr11 13934515 13934881 -136848672 + L1MC4a LINE L1 5106 5454 -846 * 6041 89 3 12 chr11 13934879 13936076 -136847477 + L1PA8A LINE L1 4942 6128 -3 384 284 66 51 chr11 13936152 13936409 -136847144 + L1MC5 LINE L1 7668 7928 -33 331 68 0 0 chr11 13936506 13936550 -136847003 + MLT2C1 LTR ERVL 354 397 0 2338 74 0 46 chr11 13936633 13936959 -136846594 - AluY SINE Alu 0 311 1 511 298 59 41 chr11 13937961 13938300 -136845253 - L2 LINE L2 -4 3309 2965 621 269 41 101 chr11 13938337 13938653 -136844900 - L2 LINE L2 -454 2860 2564 288 272 179 5 chr11 13939029 13939213 -136844340 - MARNA DNA Mariner -205 381 166 352 289 66 25 chr11 13939416 13939537 -136844016 + L2 LINE L2 3116 3241 -31 1102 234 46 3 chr11 13939843 13940125 -136843428 + LTR16A1 LTR ERVL 160 453 -4 229 214 18 0 chr11 13940327 13940383 -136843170 + MLT1K LTR MaLR 525 581 -7 180 111 0 0 chr11 13940682 13940709 -136842844 + (A)n Simple_repeat Simple_repeat 1 27 0 2145 135 0 7 chr11 13941021 13941318 -136842235 - AluSx SINE Alu -16 296 2 671 361 121 29 chr11 13941857 13942138 -136841415 + L2 LINE L2 2245 2499 -814 759 175 7 36 chr11 13942138 13942275 -136841278 - FLAM_A SINE Alu 0 133 1 671 361 121 29 chr11 13942275 13942966 -136840587 + L2 LINE L2 2499 3313 0 225 279 99 13 chr11 13943121 13943242 -136840311 + MIR SINE MIR 16 152 -61 192 315 0 101 chr11 13943223 13943243 -136840310 + L2 LINE L2 3166 3186 -86 * 1914 154 3 10 chr11 13943243 13943554 -136839999 + AluJo SINE Alu 1 309 -3 192 315 0 101 chr11 13943554 13943622 -136839931 + L2 LINE L2 3186 3245 -27 281 128 13 39 chr11 13943710 13943788 -136839765 + (TA)n Simple_repeat Simple_repeat 2 77 0 528 215 25 0 chr11 13943873 13943994 -136839559 + L1M4 LINE L1 4680 4803 -1343 * 29176 112 17 68 chr11 13943989 13950402 -136833151 - L1PA8 LINE L1 -99 6073 1 237 116 70 0 chr11 13950419 13950462 -136833091 + L1ME LINE L1 5722 5767 -399 1052 70 0 0 chr11 13950508 13950636 -136832917 + AluY SINE Alu 176 303 -8 220 319 106 0 chr11 13950725 13950838 -136832715 - MIR SINE MIR -63 145 21 193 240 29 19 chr11 13951583 13951655 -136831898 - MIR SINE MIR -94 168 97 2656 109 3 8 chr11 13951852 13952229 -136831324 + THE1C LTR MaLR 1 375 0 7162 176 33 89 chr11 13952231 13952652 -136830901 + THE1C-int LTR MaLR 3 446 -1205 2311 107 0 19 chr11 13952652 13952969 -136830584 + AluY SINE Alu 1 311 0 7162 176 33 89 chr11 13952969 13954294 -136829259 + THE1C-int LTR MaLR 446 1651 0 2253 110 84 35 chr11 13954294 13954639 -136828914 + THE1B LTR MaLR 1 362 -2 550 167 10 29 chr11 13954639 13954741 -136828812 + THE1C LTR MaLR 46 145 -230 14663 169 19 8 chr11 13955162 13958944 -136824609 - L1PB2 LINE L1 -3 6205 2381 1305 136 0 5 chr11 13958944 13959128 -136824425 + AluJb SINE Alu 1 183 -129 2244 139 124 2 chr11 13959158 13959644 -136823909 + L1PBa LINE L1 2499 3043 -3819 862 147 0 8 chr11 13959649 13959778 -136823775 - AluSp/q SINE Alu -22 291 164 411 103 0 0 chr11 13959778 13959836 -136823717 - THE1B LTR MaLR -306 58 1 1942 95 62 7 chr11 13959838 13960143 -136823410 + L1PBa LINE L1 2120 2441 -4422 1058 159 0 0 chr11 13960144 13960295 -136823258 - AluSq/x SINE Alu -161 151 1 5963 140 43 24 chr11 13960402 13960708 -136822845 - L1PB2 LINE L1 -4423 1781 1482 2215 149 33 30 chr11 13960708 13961071 -136822482 + THE1B LTR MaLR 1 364 0 12472 103 1 0 chr11 13961071 13962649 -136820904 + THE1B-int LTR MaLR 1 1580 0 2238 138 33 33 chr11 13962651 13963013 -136820540 + THE1B LTR MaLR 3 364 0 5963 140 43 24 chr11 13963013 13964441 -136819112 - L1PB2 LINE L1 -4722 1482 8 * 7977 211 12 7 chr11 13964412 13966041 -136817512 - L1PBa LINE L1 -5223 1640 4 762 262 30 10 chr11 13966380 13966582 -136816971 + MIR SINE MIR 2 207 -55 1823 256 34 15 chr11 13966610 13967138 -136816415 - MER74B LTR ERVL -10 612 75 1536 167 84 14 chr11 13968686 13968961 -136814592 + AluJb SINE Alu 1 294 -18 201 74 0 0 chr11 13968968 13968995 -136814558 + (GGAGAA)n Simple_repeat Simple_repeat 5 31 0 2367 233 41 24 chr11 13969352 13969811 -136813742 + L1M4 LINE L1 4603 5078 -1068 2390 125 48 14 chr11 13969811 13970163 -136813390 - THE1B LTR MaLR 0 364 1 2367 233 41 24 chr11 13970163 13970368 -136813185 + L1M4 LINE L1 5078 5278 -868 43215 38 22 1 chr11 13970390 13976408 -136807145 - L1PA3 LINE L1 0 6155 13 397 173 37 0 chr11 13976407 13976488 -136807065 + L1M LINE L1 5269 5352 -826 * 227 383 39 7 chr11 13977071 13977225 -136806328 + LTR16C LTR ERVL 226 384 -107 3001 112 75 17 chr11 13978519 13979001 -136804552 - MER9 LTR ERVK -1 510 1 1977 68 11 0 chr11 13979256 13979518 -136804035 + L1P2 LINE L1 5493 5726 -428 423 286 30 14 chr11 13979634 13979780 -136803773 - MER5A DNA MER1_type -39 139 4 215 334 24 10 chr11 13979970 13980140 -136803413 + MIR SINE MIR 30 243 -19 324 331 66 18 chr11 13980194 13980360 -136803193 + MIR3 SINE MIR 14 187 -21 2509 84 0 0 chr11 13981359 13981667 -136801886 - AluSc SINE Alu 0 309 2 1796 168 10 3 chr11 13982000 13982303 -136801250 - AluJo SINE Alu -7 305 1 235 174 0 0 chr11 13982305 13982351 -136801202 - L1M4 LINE L1 -3009 3137 3092 258 258 113 13 chr11 13982871 13983022 -136800531 + L1ME4a LINE L1 5952 6117 -4 693 263 134 0 chr11 13983028 13983222 -136800331 - MIR SINE MIR -3 259 40 2006 174 0 0 chr11 13983222 13983527 -136800026 - AluJb SINE Alu -7 305 1 3621 154 73 24 chr11 13984507 13985188 -136798365 + L1MB2 LINE L1 5449 6163 -8 19475 61 3 0 chr11 13985282 13988150 -136795403 + L1PA6 LINE L1 11 2870 -3284 19475 67 4 2 chr11 13988150 13991353 -136792200 + L1PA6 LINE L1 2945 6154 0 19475 61 3 0 chr11 13991353 13991394 -136792159 + L1PA6 LINE L1 2870 6154 0 321 306 92 43 chr11 13991828 13992174 -136791379 - L2 LINE L2 -1201 2113 1751 914 279 93 64 chr11 13992232 13993126 -136790427 - L1MC4a LINE L1 -1635 6173 5254 353 348 40 54 chr11 13993474 13993770 -136789783 - L2 LINE L2 -1898 1416 1125 22219 147 28 4 chr11 13993897 13997415 -136786138 + L1MA3 LINE L1 8 3610 -3955 26877 165 20 20 chr11 13997420 13999120 -136784433 + L1PA10 LINE L1 10 1709 -4774 2836 19 0 3 chr11 13999120 13999433 -136784120 + AluYb8 SINE Alu 1 312 -6 26877 165 20 20 chr11 13999433 14004176 -136779377 + L1PA10 LINE L1 1709 6479 -4 8395 175 47 19 chr11 14004502 14006025 -136777528 + L1MA3 LINE L1 3565 5043 -2681 2046 128 7 7 chr11 14006025 14006329 -136777224 - AluSx SINE Alu -8 304 1 8395 175 47 19 chr11 14006329 14006384 -136777169 + L1MA3 LINE L1 5043 5095 -2629 2308 91 0 14 chr11 14006384 14006681 -136776872 + AluY SINE Alu 1 293 -18 8395 175 47 19 chr11 14006681 14009023 -136774530 + L1MA3 LINE L1 5095 7724 0 757 303 49 67 chr11 14009145 14009700 -136773853 - L2 LINE L2 -2401 913 369 713 252 9 52 chr11 14010090 14010300 -136773253 - MIR SINE MIR -47 215 15 1792 153 0 3 chr11 14011144 14011426 -136772127 + AluJb SINE Alu 5 285 -27 2264 110 7 3 chr11 14013231 14013539 -136770014 + AluSx SINE Alu 1 309 -3 255 79 0 0 chr11 14013904 14013942 -136769611 + (GA)n Simple_repeat Simple_repeat 1 38 0 274 371 81 8 chr11 14013971 14014230 -136769323 - LTR16C LTR ERVL -14 477 200 2407 235 37 14 chr11 14014791 14015523 -136768030 - L1M4 LINE L1 -794 5352 4604 1413 197 95 0 chr11 14015876 14016207 -136767346 - AluSg SINE Alu 0 357 1 271 352 97 22 chr11 14016455 14016722 -136766831 + L2 LINE L2 1859 2145 -1169 1999 149 0 0 chr11 14016980 14017290 -136766263 + AluSx SINE Alu 1 310 0 971 417 44 14 chr11 14018080 14018509 -136765044 + MER74B LTR ERVL 75 516 -106 734 287 31 14 chr11 14018606 14018829 -136764724 - MIR SINE MIR -35 227 1 312 276 301 4 chr11 14019694 14019933 -136763620 + L2 LINE L2 1318 1627 -1687 783 264 9 35 chr11 14019960 14020187 -136763366 + L2 LINE L2 2260 2480 -834 6928 113 20 19 chr11 14020200 14021883 -136761670 - L1MA1 LINE L1 -4 6298 4600 1084 297 145 16 chr11 14021884 14022583 -136760970 + L2 LINE L2 2464 3263 -50 354 121 0 0 chr11 14023171 14023229 -136760324 - MER58A DNA MER1_type -6 218 161 384 224 51 0 chr11 14023231 14023329 -136760224 - MER58A DNA MER1_type -4 103 1 258 282 13 0 chr11 14023346 14023424 -136760129 + MLT1J LTR MaLR 69 147 -364 1926 169 20 0 chr11 14023451 14023753 -136759800 - AluJb SINE Alu -4 308 1 233 216 0 20 chr11 14023757 14023808 -136759745 - MER20 DNA MER1_type 0 219 170 2359 143 46 29 chr11 14023816 14024293 -136759260 - L1MB7 LINE L1 -16 6168 5684 1173 160 10 0 chr11 14024295 14024495 -136759058 - L1MB7 LINE L1 -561 5623 5422 346 285 31 0 chr11 14024493 14024623 -136758930 - L1ME LINE L1 -381 5789 5656 * 992 239 44 10 chr11 14024638 14024966 -136758587 - L1ME LINE L1 -595 5569 5232 750 278 112 42 chr11 14026274 14026849 -136756704 - L1ME LINE L1 -1058 5088 4463 2181 114 0 16 chr11 14026849 14027156 -136756397 - AluSx SINE Alu -10 302 1 750 278 112 42 chr11 14027156 14027217 -136756336 - L1ME LINE L1 -1683 4463 4408 758 273 123 0 chr11 14027300 14027520 -136756033 - MIR SINE MIR -1 261 15 216 0 0 0 chr11 14027528 14027552 -136756001 + (TC)n Simple_repeat Simple_repeat 2 25 0 25 0 0 0 chr11 14028349 14028374 -136755179 + AT_rich Low_complexity Low_complexity 1 25 0 237 300 100 20 chr11 14028801 14028874 -136754679 - L2 LINE L2 0 3272 3187 1303 237 111 8 chr11 14028874 14029233 -136754320 - MSTD LTR MaLR 0 396 1 237 300 100 20 chr11 14029233 14029259 -136754294 - L2 LINE L2 -84 3188 3165 12932 209 11 4 chr11 14029692 14033527 -136750026 - L1PA15 LINE L1 0 6816 2998 575 115 11 0 chr11 14033529 14033616 -136749937 + 5S rRNA rRNA 1 88 -33 4390 231 29 35 chr11 14033617 14034874 -136748679 - L1PA15 LINE L1 -3785 3012 1748 2303 100 3 0 chr11 14034874 14035174 -136748379 + AluSg SINE Alu 1 301 -9 4390 231 29 35 chr11 14035174 14036168 -136747385 - L1PA15 LINE L1 -5049 1748 412 1933 259 29 2 chr11 14036275 14036731 -136746822 - L1PA15 LINE L1 -6319 468 1 21 0 0 0 chr11 14036744 14036765 -136746788 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr11 14036971 14036996 -136746557 + (TA)n Simple_repeat Simple_repeat 1 25 0 529 326 81 8 chr11 14037108 14037344 -136746209 - MIR SINE MIR -3 259 7 452 255 149 37 chr11 14037717 14037878 -136745675 - MIR SINE MIR -79 183 5 2201 118 0 0 chr11 14038063 14038360 -136745193 - AluSq SINE Alu -16 297 1 582 134 41 0 chr11 14038495 14038592 -136744961 - AluSx SINE Alu -3 309 209 41290 42 2 13 chr11 14038607 14044821 -136738732 - L1PA4 LINE L1 0 6155 14 1374 166 0 22 chr11 14044821 14045050 -136738503 - AluSx SINE Alu -88 224 1 630 285 115 17 chr11 14045327 14045797 -136737756 - L1ME4a LINE L1 -295 5826 5374 1965 152 7 0 chr11 14045922 14046219 -136737334 - AluJb SINE Alu -13 299 1 2780 157 18 33 chr11 14046222 14046794 -136736759 - L1MB5 LINE L1 0 6174 5612 1203 222 30 22 chr11 14046794 14047159 -136736394 - L1MB5 LINE L1 -1403 4743 4376 1354 149 0 0 chr11 14047159 14047353 -136736200 - AluSx SINE Alu -118 194 1 1210 196 38 33 chr11 14047353 14047721 -136735832 - L1MB5 LINE L1 -2461 3685 3316 1407 248 104 11 chr11 14047726 14048186 -136735367 - L2 LINE L2 -1124 2190 1688 181 194 119 45 chr11 14048460 14048527 -136735026 + MER5A DNA MER1_type 40 111 -78 2566 110 72 5 chr11 14049115 14049516 -136734037 - MSTA LTR MaLR 0 428 1 21 36 0 0 chr11 14050544 14050572 -136732981 + AT_rich Low_complexity Low_complexity 1 28 0 496 247 89 0 chr11 14051180 14051338 -136732215 + MER96 DNA MER1_type 1 172 -3 1284 227 45 108 chr11 14051463 14052039 -136731514 + MER34 LTR ERV1 1 540 -2 3718 153 67 33 chr11 14053219 14054136 -136729417 - L1MB8 LINE L1 -17 6161 5202 960 196 0 0 chr11 14054139 14054297 -136729256 - AluJb SINE Alu -13 299 142 5057 204 77 33 chr11 14054302 14055869 -136727684 - L1MB8 LINE L1 -926 5220 3582 929 243 158 25 chr11 14056179 14056628 -136726925 - HAL1b LINE L1 -605 743 235 602 225 8 47 chr11 14057096 14057225 -136726328 - FLAM_A SINE Alu -8 125 2 557 247 100 6 chr11 14057338 14057508 -136726045 - MLT1L LTR MaLR -2 613 428 823 225 25 50 chr11 14057801 14058001 -136725552 + MLT1A1 LTR MaLR 171 365 0 243 52 17 190 chr11 14058091 14058149 -136725404 - MLT2D LTR ERVL 0 414 367 350 167 0 17 chr11 14058159 14058219 -136725334 + MER8 DNA MER2_type 2 60 -179 850 201 25 10 chr11 14058261 14058460 -136725093 + L1MD3 LINE L1 6904 7105 -890 505 229 0 0 chr11 14058470 14058566 -136724987 + MLT1F1 LTR MaLR 35 130 -437 3200 160 10 27 chr11 14058568 14059155 -136724398 + L1MD3 LINE L1 7410 7986 -9 3745 63 7 2 chr11 14059399 14059841 -136723712 - MLT2A1 LTR ERVL 0 444 1 2300 130 133 5 chr11 14059993 14060370 -136723183 - MSTA LTR MaLR -3 425 1 2139 175 66 31 chr11 14061204 14061627 -136721926 - LTR47A LTR ERVL -14 438 1 1040 203 25 98 chr11 14061628 14062040 -136721513 - MER4B-int LTR ERV1 -258 4865 4636 2148 125 26 0 chr11 14062095 14062400 -136721153 - AluSq SINE Alu 0 313 1 1685 104 16 108 chr11 14062400 14062716 -136720837 - MER4B-int LTR ERV1 -1509 5249 4963 2698 198 43 11 chr11 14062739 14063275 -136720278 - MER4B-int LTR ERV1 -1905 4853 4301 880 166 8 17 chr11 14063272 14063456 -136720097 - MER4B-int LTR ERV1 -2483 4275 1182 * 2099 138 10 3 chr11 14063465 14063770 -136719783 - AluSx SINE Alu -1 311 5 411 227 0 0 chr11 14063972 14064100 -136719453 + G-rich Low_complexity Low_complexity 1 128 0 22 0 0 0 chr11 14064810 14064832 -136718721 + GC_rich Low_complexity Low_complexity 1 22 0 737 211 21 0 chr11 14065968 14066110 -136717443 - FRAM SINE Alu -30 146 2 1894 123 9 28 chr11 14066152 14066470 -136717083 - AluSx SINE Alu 0 312 1 1939 159 94 74 chr11 14067061 14067216 -136716337 - MLT1C LTR MaLR 0 467 317 2405 125 125 10 chr11 14067216 14067600 -136715953 + MSTA LTR MaLR 1 428 0 1939 159 94 74 chr11 14067600 14067902 -136715651 - MLT1C LTR MaLR -150 317 1 26 0 0 0 chr11 14068523 14068549 -136715004 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr11 14068665 14068688 -136714865 + AT_rich Low_complexity Low_complexity 1 23 0 262 308 14 98 chr11 14068931 14069074 -136714479 + MLT1H1 LTR MaLR 9 139 -416 23 0 0 0 chr11 14069584 14069607 -136713946 + AT_rich Low_complexity Low_complexity 1 23 0 2355 88 0 0 chr11 14069649 14069943 -136713610 + AluY SINE Alu 1 294 -17 9345 62 2 14 chr11 14069951 14071131 -136712422 + L1P LINE L1 1 1165 -4981 5982 138 5 26 chr11 14071235 14071410 -136712143 - MER4B-int LTR ERV1 -2728 4030 3853 2443 118 128 8 chr11 14071410 14071792 -136711761 + MSTA LTR MaLR 1 428 0 5982 138 5 26 chr11 14071792 14072586 -136710967 - MER4B-int LTR ERV1 -2905 3853 3081 226 278 0 44 chr11 14072596 14072686 -136710867 - L1MC4 LINE L1 -1342 6700 6615 471 213 21 7 chr11 14072690 14072831 -136710722 + (TATATG)n Simple_repeat Simple_repeat 4 146 0 22 35 0 0 chr11 14072864 14072893 -136710660 + AT_rich Low_complexity Low_complexity 1 29 0 837 185 0 60 chr11 14072903 14073129 -136710424 - AluJb SINE Alu -31 281 2 303 93 0 0 chr11 14073169 14073212 -136710341 + (TCC)n Simple_repeat Simple_repeat 3 45 0 1392 183 11 49 chr11 14073212 14073497 -136710056 - AluJo SINE Alu -38 274 1 1471 205 45 45 chr11 14073509 14074052 -136709501 - LTR49-int LTR ERV1 -1950 2936 2559 37036 97 12 12 chr11 14074111 14080262 -136703291 + L1PA6 LINE L1 11 6154 0 2072 225 96 78 chr11 14080324 14080390 -136703163 - LTR49-int LTR ERV1 -2594 2286 2223 2199 129 76 15 chr11 14080390 14080731 -136702822 - THE1B LTR MaLR 0 364 3 2072 225 96 78 chr11 14080731 14081351 -136702202 - LTR49-int LTR ERV1 -2657 2223 1616 2690 145 41 5 chr11 14081351 14081764 -136701789 + MSTA LTR MaLR 1 428 0 9798 157 40 22 chr11 14081764 14083386 -136700167 + MSTA-int LTR MaLR 1 1651 0 2553 124 70 5 chr11 14083386 14083788 -136699765 + MSTA LTR MaLR 1 428 0 2072 225 96 78 chr11 14083788 14083937 -136699616 - LTR49-int LTR ERV1 -3263 1617 751 1713 163 37 59 chr11 14084312 14084687 -136698866 - LTR47A LTR ERVL -2 450 84 1968 127 0 43 chr11 14084687 14084986 -136698567 - AluSx SINE Alu -6 306 21 205 183 33 67 chr11 14085067 14085127 -136698426 + L2 LINE L2 3210 3267 -5 207 332 106 68 chr11 14085489 14085754 -136697799 + L2 LINE L2 2825 3099 -173 2145 143 0 0 chr11 14085793 14086101 -136697452 - AluSx SINE Alu -4 308 1 1005 170 0 23 chr11 14086158 14086329 -136697224 - FRAM SINE Alu -12 164 1 445 67 22 67 chr11 14086331 14086420 -136697133 - Charlie5 DNA MER1_type -56 2556 2472 2306 98 0 3 chr11 14087871 14088167 -136695386 + AluSg SINE Alu 1 295 -15 2124 110 0 10 chr11 14088174 14088466 -136695087 + AluY SINE Alu 1 289 -22 522 288 27 27 chr11 14088552 14088736 -136694817 + MIR SINE MIR 8 191 -71 196 250 130 60 chr11 14090229 14090329 -136693224 + L2 LINE L2 3153 3259 -13 359 251 56 4 chr11 14090639 14090785 -136692768 - L1ME3 LINE L1 0 6164 6005 195 42 0 0 chr11 14091584 14091608 -136691945 + (CGG)n Simple_repeat Simple_repeat 3 26 0 25 65 0 0 chr11 14091760 14091806 -136691747 + GC_rich Low_complexity Low_complexity 1 46 0 737 211 21 0 chr11 14092944 14093086 -136690467 - FRAM SINE Alu -30 146 2 1916 125 6 28 chr11 14093128 14093447 -136690106 - AluSx SINE Alu 0 312 1 193 333 32 32 chr11 14094004 14094130 -136689423 - L2 LINE L2 -189 3083 2958 579 208 213 11 chr11 14094462 14094645 -136688908 - MIR SINE MIR 0 262 43 315 282 13 0 chr11 14094636 14094714 -136688839 - L2 LINE L2 -6 3266 3188 * 1298 178 45 25 chr11 14095175 14095417 -136688136 + AluJb SINE Alu 52 298 -14 534 254 84 33 chr11 14096159 14096372 -136687181 - MIR SINE MIR -16 246 23 30 45 0 0 chr11 14096759 14096803 -136686750 + AT_rich Low_complexity Low_complexity 1 44 0 2443 71 7 3 chr11 14096886 14097194 -136686359 + AluSg SINE Alu 1 309 -1 579 254 0 16 chr11 14097202 14097324 -136686229 + MIR SINE MIR 30 149 -59 403 226 78 10 chr11 14097808 14097910 -136685643 - L1MC5 LINE L1 -97 7864 7756 266 283 123 38 chr11 14099748 14099854 -136683699 - MIR3 SINE MIR -6 202 88 2289 71 3 0 chr11 14101125 14101408 -136682145 - AluY SINE Alu -16 295 12 21 0 0 0 chr11 14101954 14101975 -136681578 + AT_rich Low_complexity Low_complexity 1 21 0 566 270 0 0 chr11 14103122 14103248 -136680305 - FLAM_A SINE Alu -16 126 1 2439 135 54 47 chr11 14103277 14103706 -136679847 - MSTB1 LTR MaLR 0 432 1 304 71 24 0 chr11 14103909 14103951 -136679602 - MER61C LTR ERV1 0 434 392 1011 222 55 31 chr11 14104211 14104532 -136679021 + MLT1G LTR MaLR 1 284 -306 590 233 0 16 chr11 14104573 14104702 -136678851 + MLT1G LTR MaLR 429 555 0 22 0 0 0 chr11 14104747 14104769 -136678784 + AT_rich Low_complexity Low_complexity 1 22 0 1023 215 72 0 chr11 14105216 14105425 -136678128 + MER58A DNA MER1_type 1 224 0 1741 199 0 10 chr11 14105456 14105768 -136677785 - AluJb SINE Alu -3 309 1 2224 117 0 0 chr11 14105967 14106266 -136677287 + AluSx SINE Alu 1 299 -13 772 132 7 37 chr11 14106399 14106535 -136677018 - FLAM_C SINE Alu 0 133 2 282 284 68 80 chr11 14107313 14107475 -136676078 - MIR SINE MIR -75 187 28 290 254 0 0 chr11 14108778 14108841 -136674712 - MIR3 SINE MIR -8 200 138 663 135 39 0 chr11 14109410 14109514 -136674039 - HY1 scRNA scRNA -3 109 2 278 256 81 23 chr11 14109814 14109900 -136673653 - MIR SINE MIR -122 140 50 3095 19 11 0 chr11 14110600 14110965 -136672588 + L1PA4 LINE L1 5784 6152 -3 325 109 0 0 chr11 14111458 14111504 -136672049 + L2 LINE L2 3264 3309 -4 624 152 9 9 chr11 14111677 14111789 -136671764 - FLAM_A SINE Alu -4 138 27 496 204 124 26 chr11 14111884 14111997 -136671556 + MER94 DNA DNA 5 128 -6 2034 224 145 37 chr11 14112027 14112729 -136670824 - L1ME3A LINE L1 -9 6161 5536 2371 79 0 3 chr11 14112729 14113032 -136670521 - AluSx SINE Alu -10 302 1 2034 224 145 37 chr11 14113032 14113782 -136669771 - L1ME3A LINE L1 -634 5536 4431 232 81 27 0 chr11 14113824 14113861 -136669692 - L1MB5 LINE L1 -8 6166 6129 1187 180 41 132 chr11 14113863 14114257 -136669296 - MLT1A1 LTR MaLR -7 358 1 3099 184 42 17 chr11 14114257 14114679 -136668874 - L1MB5 LINE L1 -40 6134 5689 1212 160 48 35 chr11 14114679 14114743 -136668810 + MER46A DNA MER2_type 2 64 -2667 2020 125 10 0 chr11 14114743 14115032 -136668521 + AluSx SINE Alu 3 294 -18 1212 160 48 35 chr11 14115032 14115198 -136668355 + MER46A DNA MER2_type 64 235 -1 3099 184 42 17 chr11 14115198 14115418 -136668135 - L1MB5 LINE L1 -485 5689 5476 226 250 38 0 chr11 14115742 14115822 -136667731 - HAL1 LINE L1 -1600 907 825 1288 80 146 0 chr11 14115951 14116150 -136667403 + MER30 DNA MER1_type 3 230 0 293 212 129 24 chr11 14117301 14117386 -136666167 - MIR3 SINE MIR -26 182 89 216 265 59 73 chr11 14118118 14118254 -136665299 - MIR SINE MIR 0 262 129 25 31 0 0 chr11 14118766 14118798 -136664755 + AT_rich Low_complexity Low_complexity 1 32 0 892 186 149 0 chr11 14119763 14119951 -136663602 - MER20 DNA MER1_type 0 219 4 1954 139 3 7 chr11 14120023 14120325 -136663228 + AluSx SINE Alu 1 301 -11 361 330 31 21 chr11 14120840 14121031 -136662522 + L2 LINE L2 2177 2369 -945 292 252 96 52 chr11 14121074 14121189 -136662364 - L2 LINE L2 0 3313 3194 338 299 75 95 chr11 14121328 14121397 -136662156 + L2 LINE L2 2685 2754 -560 2363 65 3 3 chr11 14121397 14121691 -136661862 + AluY SINE Alu 3 296 -15 338 299 75 95 chr11 14121691 14121915 -136661638 + L2 LINE L2 2754 2972 -342 25 51 0 0 chr11 14122185 14122224 -136661329 + AT_rich Low_complexity Low_complexity 1 39 0 438 258 53 23 chr11 14122867 14122999 -136660554 + MIR SINE MIR 37 172 -90 26 0 0 0 chr11 14123822 14123848 -136659705 + AT_rich Low_complexity Low_complexity 1 26 0 942 165 18 0 chr11 14124105 14124269 -136659284 + L1MA5A LINE L1 6128 6294 -3 358 123 192 27 chr11 14124306 14124379 -136659174 + AluJb SINE Alu 43 127 -175 26 30 0 0 chr11 14124379 14124412 -136659141 + AT_rich Low_complexity Low_complexity 1 33 0 389 343 21 14 chr11 14124694 14124837 -136658716 + MIR SINE MIR 8 151 -111 21 0 0 0 chr11 14125219 14125240 -136658313 + AT_rich Low_complexity Low_complexity 1 21 0 1294 151 0 9 chr11 14126018 14126230 -136657323 - AluJb SINE Alu -3 309 100 2155 122 0 0 chr11 14126608 14126911 -136656642 + AluSq SINE Alu 1 303 -10 278 340 36 62 chr11 14127277 14127471 -136656082 - MER5A DNA MER1_type 0 189 1 208 200 0 83 chr11 14127474 14127534 -136656019 - MER5A DNA MER1_type -26 163 109 324 349 66 20 chr11 14127659 14127811 -136655742 - MER5A DNA MER1_type -22 167 9 234 210 16 16 chr11 14129040 14129102 -136654451 - L1MC/D LINE L1 -516 5817 5756 975 133 99 5 chr11 14129348 14129559 -136653994 - L1MA8 LINE L1 -3 6288 6058 503 250 125 45 chr11 14129626 14129850 -136653703 - MIR SINE MIR -5 257 16 342 269 65 43 chr11 14129929 14130115 -136653438 - L1MC/D LINE L1 -1993 5815 5626 23 54 0 0 chr11 14130493 14130530 -136653023 + AT_rich Low_complexity Low_complexity 1 37 0 1689 112 27 12 chr11 14130970 14131229 -136652324 + AluSg SINE Alu 43 305 -5 285 29 0 0 chr11 14131291 14131325 -136652228 + (CA)n Simple_repeat Simple_repeat 1 34 0 205 286 39 26 chr11 14132747 14132824 -136650729 - MIR3 SINE MIR -14 194 117 777 248 142 23 chr11 14133066 14133368 -136650185 - MER46C DNA MER2_type 0 338 1 687 290 82 48 chr11 14139160 14139594 -136643959 - MLT1G LTR MaLR -13 542 82 1442 63 0 5 chr11 14139650 14139841 -136643712 - L1PA5 LINE L1 -16 6138 5949 266 229 0 0 chr11 14139864 14139912 -136643641 - MLT1G LTR MaLR -547 48 1 1107 230 4 13 chr11 14140485 14140711 -136642842 - MER58A DNA MER1_type 0 224 1 786 226 133 99 chr11 14141484 14142035 -136641518 - MLT1G LTR MaLR -10 580 7 836 229 51 0 chr11 14142514 14142689 -136640864 + MER20 DNA MER1_type 36 219 0 2363 91 3 10 chr11 14145309 14145618 -136637935 - AluSx SINE Alu -4 308 2 236 77 26 0 chr11 14145701 14145740 -136637813 + (TA)n Simple_repeat Simple_repeat 1 40 0 698 286 152 21 chr11 14145837 14145928 -136637625 - L1MEd LINE L1 -4711 1599 1521 1624 173 16 19 chr11 14145928 14146240 -136637313 + AluJo SINE Alu 2 312 0 698 286 152 21 chr11 14146240 14147005 -136636548 - L1MEd LINE L1 -4789 1521 592 1951 128 7 13 chr11 14147109 14147413 -136636140 + AluJb SINE Alu 1 302 -10 733 200 35 25 chr11 14147500 14147700 -136635853 - MER33 DNA MER1_type -97 227 26 654 126 0 10 chr11 14147712 14147815 -136635738 + MSTA LTR MaLR 327 428 0 1270 206 60 31 chr11 14147816 14148257 -136635296 - L1ME3A LINE L1 -164 6006 5415 555 313 83 19 chr11 14148255 14148520 -136635033 + L1ME4a LINE L1 5262 5543 -2265 * 436 243 51 86 chr11 14148522 14148906 -136634647 - L1MEc LINE L1 -3845 2581 2234 265 56 0 0 chr11 14148972 14149008 -136634545 - MADE1 DNA Mariner 0 80 45 541 326 38 23 chr11 14149091 14149438 -136634115 - L1MEc LINE L1 -4584 2023 1672 339 306 45 57 chr11 14149496 14149653 -136633900 - L1MEc LINE L1 -5058 1368 1214 344 305 76 0 chr11 14150763 14150881 -136632672 - MIR3 SINE MIR -67 141 15 25 51 0 0 chr11 14153224 14153263 -136630290 + AT_rich Low_complexity Low_complexity 1 39 0 24 67 0 0 chr11 14154967 14155012 -136628541 + AT_rich Low_complexity Low_complexity 1 45 0 316 176 162 0 chr11 14155636 14155704 -136627849 + MER116 DNA Mariner 1 79 -1 244 200 67 17 chr11 14155731 14155791 -136627762 + MARNA DNA Mariner 44 106 -480 618 269 211 0 chr11 14155960 14156168 -136627385 - MIR SINE MIR -10 252 1 269 140 80 0 chr11 14156261 14156311 -136627242 - L2 LINE L2 0 3272 3219 4052 93 37 2 chr11 14156788 14157323 -136626230 - MER41A LTR ERV1 0 554 1 1135 151 32 32 chr11 14157498 14157684 -136625869 + MER5A DNA MER1_type 4 189 0 2242 113 3 0 chr11 14157790 14158092 -136625461 + AluSg SINE Alu 2 304 -6 233 225 38 38 chr11 14158092 14158172 -136625381 + L1ME4a LINE L1 5953 6032 -89 199 200 0 0 chr11 14158938 14158973 -136624580 + L2 LINE L2 3264 3298 -15 28 29 0 0 chr11 14160399 14160434 -136623119 + AT_rich Low_complexity Low_complexity 1 35 0 1965 154 10 0 chr11 14160821 14161171 -136622382 - AluSx SINE Alu 0 353 1 191 236 181 42 chr11 14161173 14161245 -136622308 - MER5A DNA MER1_type -72 117 36 31 0 0 0 chr11 14161659 14161690 -136621863 + AT_rich Low_complexity Low_complexity 1 31 0 874 167 83 44 chr11 14161690 14161894 -136621659 + AluJo SINE Alu 84 295 -17 604 217 183 6 chr11 14161949 14162129 -136621424 + MIR SINE MIR 36 247 -15 2175 108 3 7 chr11 14163094 14163389 -136620164 - AluSq SINE Alu -18 295 2 1020 240 78 6 chr11 14163696 14164121 -136619432 + LTR33 LTR ERVL 19 505 -16 2323 82 10 0 chr11 14164527 14164819 -136618734 - AluSx SINE Alu -17 295 1 362 358 98 12 chr11 14164820 14165066 -136618487 + L2 LINE L2 2454 2720 -594 25 75 0 0 chr11 14165408 14165461 -136618092 + AT_rich Low_complexity Low_complexity 1 53 0 362 299 57 67 chr11 14165542 14165736 -136617817 + MER117 DNA MER1_type 1 192 -5 326 315 63 0 chr11 14165837 14165980 -136617573 - L1MEc LINE L1 -2254 3961 3810 * 1552 253 83 98 chr11 14165976 14167103 -136616450 - L1MEc LINE L1 -4355 2041 934 1518 190 48 24 chr11 14167103 14167392 -136616161 + AluJo SINE Alu 1 296 -16 1552 253 83 98 chr11 14167392 14167536 -136616017 - L1MEc LINE L1 -5462 934 789 273 136 0 0 chr11 14167538 14167582 -136615971 - AluJ/FLAM SINE Alu -218 84 41 347 333 31 16 chr11 14167787 14167979 -136615574 - L1MEc LINE L1 -5951 445 251 647 317 117 27 chr11 14168642 14169052 -136614501 - LTR16A LTR ERVL -3 447 1 631 326 164 20 chr11 14170189 14171529 -136612024 + L2 LINE L2 1521 3056 -216 776 263 9 9 chr11 14172069 14172282 -136611271 + L1PB1 LINE L1 4 216 -6647 * 15631 179 19 21 chr11 14172259 14173185 -136610368 + L1PB1 LINE L1 1392 2319 -4548 2221 115 30 0 chr11 14173185 14173481 -136610072 - AluSg SINE Alu -5 305 1 15631 179 19 21 chr11 14173481 14174824 -136608729 + L1PB1 LINE L1 2319 3664 -3203 2144 108 0 19 chr11 14174824 14175131 -136608422 + AluY SINE Alu 1 301 -10 15631 179 19 21 chr11 14175131 14178286 -136605267 + L1PB1 LINE L1 3664 6866 -1 543 78 0 0 chr11 14178518 14178595 -136604958 + (TGGA)n Simple_repeat Simple_repeat 1 77 0 2093 136 0 22 chr11 14179139 14179456 -136604097 + AluSg SINE Alu 1 310 0 1601 149 156 53 chr11 14181378 14181828 -136601725 - LTR54B LTR ERV1 -2 496 1 194 224 0 103 chr11 14182213 14182271 -136601282 - MIR SINE MIR -88 174 123 185 280 0 0 chr11 14182369 14182419 -136601134 - MIR SINE MIR -17 245 196 1276 184 56 23 chr11 14182485 14182790 -136600763 - MER33 DNA MER1_type -9 315 1 492 336 24 64 chr11 14183875 14184170 -136599383 - MLT1K LTR MaLR -3 585 303 24 32 0 0 chr11 14184488 14184519 -136599034 + AT_rich Low_complexity Low_complexity 1 31 0 233 329 0 0 chr11 14184602 14184684 -136598869 - L3 LINE CR1 -1071 506 425 702 195 39 95 chr11 14184714 14184945 -136598608 + LTR33 LTR ERVL 4 221 -300 558 254 34 23 chr11 14185003 14185180 -136598373 + LTR33 LTR ERVL 334 512 -9 416 330 91 17 chr11 14185185 14185415 -136598138 - L3 LINE CR1 -1188 389 143 665 301 23 30 chr11 14185465 14185727 -136597826 - MLT1I LTR MaLR -4 405 146 281 140 120 0 chr11 14186199 14186249 -136597304 + L2 LINE L2 3258 3313 0 262 266 55 55 chr11 14187300 14187409 -136596144 - MIR SINE MIR -104 158 50 582 333 72 7 chr11 14187530 14187821 -136595732 + L2 LINE L2 2366 2675 -639 328 333 78 0 chr11 14188431 14188560 -136594993 + L2 LINE L2 3134 3272 0 191 272 12 0 chr11 14188565 14188646 -136594907 + (TA)n Simple_repeat Simple_repeat 2 83 0 2956 103 67 30 chr11 14188692 14189158 -136594395 - MER31A LTR ERV1 -2 483 1 1998 162 0 0 chr11 14189446 14189743 -136593810 + AluSx SINE Alu 1 297 -15 1774 130 6 101 chr11 14189873 14190211 -136593342 - AluJb SINE Alu -6 306 1 3220 158 112 37 chr11 14190944 14191620 -136591933 - LTR8A LTR ERV1 0 727 1 674 221 79 83 chr11 14191820 14192074 -136591479 + MLT1K LTR MaLR 334 586 -2 464 222 140 97 chr11 14192641 14192920 -136590633 - MER102b DNA MER1_type -4 337 47 767 258 74 68 chr11 14193212 14193685 -136589868 + MLT1K LTR MaLR 1 476 0 2245 103 17 0 chr11 14194318 14194618 -136588935 - AluSx SINE Alu -7 305 1 719 312 36 8 chr11 14196053 14196306 -136587247 - MIR SINE MIR 0 262 3 244 193 0 0 chr11 14196524 14196581 -136586972 - Charlie7 DNA MER1_type -2447 165 109 218 31 0 31 chr11 14196581 14196613 -136586940 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 5769 146 48 6 chr11 14196766 14197348 -136586205 + L1PA16 LINE L1 4675 5231 -935 236 53 26 0 chr11 14197348 14197386 -136586167 + (CAA)n Simple_repeat Simple_repeat 1 39 0 5769 146 48 6 chr11 14197386 14198235 -136585318 + L1PA16 LINE L1 5231 6163 -3 2451 136 62 14 chr11 14198461 14198896 -136584657 - MLT1C LTR MaLR 0 467 12 1180 203 5 5 chr11 14198986 14199203 -136584350 - MER20 DNA MER1_type 0 219 3 2198 179 126 49 chr11 14199594 14200184 -136583369 - L1MA10 LINE L1 -1 6333 5553 2336 75 3 28 chr11 14200184 14200530 -136583023 + LTR7 LTR ERV1 90 410 -40 184 0 0 88 chr11 14200535 14200569 -136582984 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1496 158 28 47 chr11 14200571 14201019 -136582534 - L1M4 LINE L1 -634 5550 5100 742 229 126 22 chr11 14201194 14201425 -136582128 + MIR SINE MIR 4 258 -4 186 245 0 0 chr11 14201440 14201489 -136582064 + L2 LINE L2 3222 3270 -2 2267 105 3 0 chr11 14202086 14202382 -136581171 - AluSp SINE Alu -14 299 3 1645 164 3 11 chr11 14202972 14203180 -136580373 + L1MB3 LINE L1 5579 5786 -397 1970 176 46 0 chr11 14203180 14203509 -136580044 + MER2 DNA MER2_type 1 344 0 1645 164 3 11 chr11 14203509 14203587 -136579966 + L1MB3 LINE L1 5786 5863 -320 787 165 86 13 chr11 14204284 14204491 -136579062 + MER106B DNA MER1_type 1 1058 -1 27 49 0 0 chr11 14204885 14204926 -136578627 + AT_rich Low_complexity Low_complexity 1 41 0 452 240 82 53 chr11 14205015 14205148 -136578405 - MIR SINE MIR -67 195 54 1336 189 120 63 chr11 14205148 14205514 -136578039 - MLT1B LTR MaLR -2 388 2 452 240 82 53 chr11 14205514 14205551 -136578002 - MIR SINE MIR -208 54 20 502 339 32 29 chr11 14205739 14206163 -136577390 + L2 LINE L2 2560 3059 -213 1616 164 22 50 chr11 14206237 14206397 -136577156 - MLT1A1 LTR MaLR -49 316 168 1993 122 3 10 chr11 14206397 14206693 -136576860 - AluSx SINE Alu -18 294 1 1616 164 22 50 chr11 14206693 14206850 -136576703 - MLT1A1 LTR MaLR -197 168 8 315 326 22 14 chr11 14208082 14208220 -136575333 - L1ME LINE L1 -391 5730 5592 1801 158 11 3 chr11 14208343 14208628 -136574925 + AluJo SINE Alu 1 287 -25 542 232 7 21 chr11 14209002 14209144 -136574409 - MARNA DNA Mariner -124 462 323 1354 244 176 19 chr11 14209233 14209818 -136573735 - LTR50 LTR ERVL -116 679 3 310 303 101 0 chr11 14209822 14209941 -136573612 - MIR SINE MIR -28 234 104 2288 138 24 27 chr11 14210083 14210459 -136573094 + THE1C LTR MaLR 1 375 0 418 315 36 0 chr11 14210775 14210886 -136572667 - MIR SINE MIR -112 150 36 361 283 173 16 chr11 14210951 14211140 -136572413 - MIR SINE MIR -27 235 17 406 195 195 6 chr11 14211140 14211293 -136572260 - MER5A DNA MER1_type 0 189 4 547 199 42 2 chr11 14212506 14212641 -136570912 - L1ME2 LINE L1 -308 5856 5730 628 269 16 33 chr11 14212642 14212824 -136570729 + MLT1H LTR MaLR 134 312 -237 465 212 26 35 chr11 14212814 14212927 -136570626 + MLT1H LTR MaLR 438 549 0 * 192 40 0 0 chr11 14213589 14213614 -136569939 + (TG)n Simple_repeat Simple_repeat 2 26 0 259 178 14 14 chr11 14213718 14213791 -136569762 + (TA)n Simple_repeat Simple_repeat 1 73 0 1338 243 11 0 chr11 14213869 14214136 -136569417 - MER115 DNA AcHobo -6 687 418 1621 198 14 3 chr11 14214177 14214460 -136569093 + MLT1A1 LTR MaLR 80 365 0 828 321 31 42 chr11 14214492 14214779 -136568774 - MER115 DNA AcHobo -338 355 72 336 275 160 42 chr11 14214827 14215547 -136568006 - L1M4 LINE L1 -2334 3812 3008 495 186 58 0 chr11 14216025 14216111 -136567442 - LTR50 LTR ERVL -696 99 9 306 295 116 50 chr11 14216290 14216531 -136567022 + L1ME3A LINE L1 680 936 -5269 205 26 26 51 chr11 14216571 14216610 -136566943 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 38127 36 26 3 chr11 14216610 14222045 -136561508 - L1PA3 LINE L1 -13 6142 578 718 76 0 0 chr11 14222012 14222104 -136561449 - L1PA3 LINE L1 -6048 98 7 * 225 216 189 0 chr11 14222151 14222225 -136561328 + L1ME3A LINE L1 1027 1114 -5091 2352 141 141 65 chr11 14222340 14222689 -136560864 - MLT2B1 LTR ERVL -10 510 114 6810 45 5 22 chr11 14222689 14223494 -136560059 + L1PA5 LINE L1 5361 6151 -3 2352 141 141 65 chr11 14223494 14223618 -136559935 - MLT2B1 LTR ERVL -406 114 1 779 275 112 30 chr11 14223632 14223963 -136559590 + L1ME3A LINE L1 1261 1648 -4748 2273 159 34 0 chr11 14223963 14224315 -136559238 - THE1B LTR MaLR 0 364 1 779 275 112 30 chr11 14224315 14224485 -136559068 + L1ME3A LINE L1 1648 1803 -4593 23 0 0 0 chr11 14224504 14224527 -136559026 + AT_rich Low_complexity Low_complexity 1 23 0 475 290 201 10 chr11 14224729 14225043 -136558510 + L1ME3A LINE L1 2150 2523 -3873 3914 245 98 53 chr11 14225077 14225211 -136558342 + L1ME3A LINE L1 3062 3189 -3042 1862 131 16 32 chr11 14225211 14225524 -136558029 + AluJb SINE Alu 5 312 0 3914 245 98 53 chr11 14225524 14226218 -136557335 + L1ME3A LINE L1 3189 3850 -2381 2226 170 11 22 chr11 14226218 14226583 -136556970 + MLT1A1 LTR MaLR 4 364 -1 3914 245 98 53 chr11 14226583 14227338 -136556215 + L1ME3A LINE L1 3850 4570 -1661 585 112 22 0 chr11 14227338 14227427 -136556126 - L1PA15 LINE L1 -7 6158 6068 3914 245 98 53 chr11 14227427 14228021 -136555532 + L1ME3A LINE L1 4570 5355 -876 330 26 0 0 chr11 14228021 14228060 -136555493 + (TG)n Simple_repeat Simple_repeat 2 40 0 3914 245 98 53 chr11 14228060 14228171 -136555382 + L1ME3A LINE L1 5355 5460 -771 1007 110 41 0 chr11 14228171 14228316 -136555237 + LTR29 LTR ERV1 395 545 -77 422 172 0 0 chr11 14228418 14228482 -136555071 - FLAM SINE Alu -27 116 53 4791 148 42 54 chr11 14228611 14229460 -136554093 + L1MB2 LINE L1 5006 5822 -349 1467 179 13 60 chr11 14229460 14229761 -136553792 + AluJo SINE Alu 11 297 -15 4791 148 42 54 chr11 14229761 14230107 -136553446 + L1MB2 LINE L1 5822 6171 0 1563 247 76 39 chr11 14230126 14230390 -136553163 + L1ME3A LINE L1 5447 5700 -539 1640 217 133 7 chr11 14230390 14230805 -136552748 - MLT1C LTR MaLR 0 467 1 1563 247 76 39 chr11 14230805 14231079 -136552474 + L1ME3A LINE L1 5700 6005 -234 440 303 32 32 chr11 14231158 14231346 -136552207 + L1ME3A LINE L1 6031 6218 -21 242 364 21 50 chr11 14232312 14232452 -136551101 + L2 LINE L2 3137 3272 0 695 266 142 20 chr11 14232617 14233042 -136550511 - L2 LINE L2 -172 3141 2667 849 230 6 0 chr11 14233055 14233233 -136550320 + MER69 DNA AcHobo 525 703 -1823 3687 196 94 26 chr11 14233259 14234103 -136549450 + MER69 DNA AcHobo 1456 2380 -146 1727 166 10 36 chr11 14234103 14234411 -136549142 - AluJo SINE Alu -12 300 1 3687 196 94 26 chr11 14234411 14234564 -136548989 + MER69 DNA AcHobo 2380 2521 -5 374 185 7 141 chr11 14234593 14234647 -136548906 - L2 LINE L2 -1004 2310 2250 2808 91 14 0 chr11 14234647 14234997 -136548556 - THE1A LTR MaLR 0 355 1 12329 97 8 1 chr11 14234997 14236563 -136546990 - THE1A-int LTR MaLR 0 1580 3 2848 75 11 0 chr11 14236567 14236916 -136546637 - THE1A LTR MaLR -2 353 1 374 185 7 141 chr11 14236916 14236990 -136546563 - L2 LINE L2 -1066 2248 2194 445 162 0 14 chr11 14236990 14237064 -136546489 + ORSL DNA AcHobo 1 73 -202 1138 216 52 22 chr11 14237066 14237297 -136546256 + Tigger5 DNA MER2_type 1 238 -2085 * 1219 111 0 0 chr11 14237287 14237458 -136546095 + Tigger5 DNA MER2_type 2085 2255 -68 407 275 50 25 chr11 14237463 14237583 -136545970 - L2 LINE L2 0 3313 3191 228 171 24 0 chr11 14237610 14237651 -136545902 + Tigger5 DNA MER2_type 14 55 -2268 440 141 115 0 chr11 14237661 14237739 -136545814 + Tigger5 DNA MER2_type 2237 2323 0 255 61 0 0 chr11 14237740 14237773 -136545780 + (CA)n Simple_repeat Simple_repeat 2 34 0 679 173 0 0 chr11 14237833 14237937 -136545616 + ORSL DNA AcHobo 169 272 -3 479 274 28 0 chr11 14237937 14238043 -136545510 - L2 LINE L2 -1113 2201 2093 1373 223 177 157 chr11 14238329 14239025 -136544528 - L2 LINE L2 -1223 2091 1173 402 215 48 108 chr11 14239025 14239212 -136544341 + MER69A DNA AcHobo 1 177 0 1373 223 177 157 chr11 14239212 14239631 -136543922 - L2 LINE L2 -2141 1173 764 1321 172 40 73 chr11 14239632 14239874 -136543679 + MER89 LTR ERV1 1 249 -310 2315 111 0 0 chr11 14239874 14240180 -136543373 + AluSg SINE Alu 1 306 -4 1321 172 40 73 chr11 14240180 14240360 -136543193 + MER89 LTR ERV1 249 506 -53 1982 289 34 40 chr11 14240375 14241106 -136542447 - L2 LINE L2 -2548 766 40 225 250 107 0 chr11 14241341 14241397 -136542156 + L2 LINE L2 3207 3268 -4 810 214 26 34 chr11 14241817 14242051 -136541502 - MER93b LTR ERV1 -2 371 140 324 275 198 18 chr11 14242299 14242466 -136541087 - L3 LINE CR1 -27 1550 1354 33132 37 1 0 chr11 14242782 14247537 -136536016 - L1PA4 LINE L1 -3 6152 1393 247 326 155 2 chr11 14248241 14248397 -136535156 + MIR SINE MIR 6 186 -76 566 248 50 134 chr11 14248414 14248773 -136534780 - L2 LINE L2 -2 3311 2983 632 229 392 10 chr11 14248887 14249193 -136534360 - L2 LINE L2 -668 2646 2224 1752 230 100 26 chr11 14249725 14250217 -136533336 - MLT1F1 LTR MaLR -2 565 38 24 0 0 0 chr11 14250303 14250327 -136533226 + AT_rich Low_complexity Low_complexity 1 24 0 219 36 0 0 chr11 14250332 14250360 -136533193 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2392 15 0 0 chr11 14250363 14250632 -136532921 - L1HS LINE L1 -2 6153 5885 * 3663 10 0 0 chr11 14250628 14251027 -136532526 + L1HS LINE L1 5495 5893 -262 890 222 6 0 chr11 14251290 14251461 -136532092 + MER74A LTR ERVL 1 172 -386 1796 184 35 27 chr11 14251673 14252048 -136531505 + MER74A LTR ERVL 177 554 -4 9158 64 3 2 chr11 14252723 14253793 -136529760 - MER11C LTR ERVK 0 1071 1 794 254 113 71 chr11 14254414 14254928 -136528625 - MLT1H LTR MaLR -4 545 12 1453 211 68 9 chr11 14255018 14255354 -136528199 + MLT1A1 LTR MaLR 10 365 0 3262 112 0 23 chr11 14256121 14256595 -136526958 - L1PA13 LINE L1 -5 6158 5696 213 269 135 31 chr11 14256600 14256759 -136526794 - MIR SINE MIR -82 180 1 413 89 0 0 chr11 14259008 14259064 -136524489 + MLT2D LTR ERVL 1 56 -358 313 218 81 0 chr11 14259063 14259150 -136524403 + MLT2D LTR ERVL 317 410 -4 * 400 243 69 28 chr11 14259713 14259857 -136523696 + MIR SINE MIR 77 226 -36 359 314 57 28 chr11 14259954 14260155 -136523398 + MIR SINE MIR 36 240 -22 203 305 0 17 chr11 14260449 14260508 -136523045 + GA-rich Low_complexity Low_complexity 2 59 0 1829 200 108 36 chr11 14261504 14261975 -136521578 - MLT1D LTR MaLR 0 505 1 2099 128 0 7 chr11 14262050 14262348 -136521205 + AluSx SINE Alu 1 296 -16 309 294 116 0 chr11 14263787 14263933 -136519620 + MIR SINE MIR 93 255 -7 241 318 0 0 chr11 14265669 14265732 -136517821 + MLT1J1 LTR MaLR 331 393 -53 370 256 168 48 chr11 14267308 14267580 -136515973 - L1MC4a LINE L1 -188 5933 5620 1413 229 35 50 chr11 14267917 14268315 -136515238 + MLT1I LTR MaLR 18 409 0 2724 23 3 0 chr11 14269056 14269358 -136514195 + AluY SINE Alu 1 303 -8 291 296 102 23 chr11 14269601 14269739 -136513814 - MER112 DNA MER1_type -4 256 130 1595 169 0 25 chr11 14269739 14270023 -136513530 - AluJb SINE Alu 0 312 36 291 296 102 23 chr11 14270023 14270057 -136513496 - MER112 DNA MER1_type -130 130 100 243 0 0 0 chr11 14270057 14270084 -136513469 + (TG)n Simple_repeat Simple_repeat 2 28 0 291 296 102 23 chr11 14270084 14270126 -136513427 - MER112 DNA MER1_type -160 100 24 275 131 16 33 chr11 14271501 14271562 -136511991 - L1MC1 LINE L1 0 6333 6274 1305 114 0 0 chr11 14271653 14271828 -136511725 - AluSg/x SINE Alu 0 310 136 180 0 0 0 chr11 14272887 14272907 -136510646 + (TTA)n Simple_repeat Simple_repeat 2 21 0 211 292 42 10 chr11 14272921 14273017 -136510536 - MIR SINE MIR -132 130 32 188 284 59 49 chr11 14273984 14274086 -136509467 + L2 LINE L2 1164 1266 -2048 340 246 32 32 chr11 14274394 14274520 -136509033 - MIR SINE MIR -12 250 125 554 278 68 45 chr11 14274771 14275037 -136508516 - MLT1K LTR MaLR 0 588 317 711 203 0 7 chr11 14275373 14275516 -136508037 + L1MB7 LINE L1 5981 6122 -62 971 203 0 11 chr11 14276050 14276237 -136507316 + L1MB8 LINE L1 5983 6167 -11 723 208 0 0 chr11 14276418 14276548 -136507005 + FLAM_C SINE Alu 3 132 -11 1481 184 31 27 chr11 14276566 14276860 -136506693 + AluJo SINE Alu 6 300 -12 259 254 17 0 chr11 14276877 14276936 -136506617 + L2 LINE L2 3223 3282 -31 1014 224 72 99 chr11 14276936 14277458 -136506095 + MLT1H LTR MaLR 1 549 0 1999 190 3 6 chr11 14278142 14278490 -136505063 + MLT1A1 LTR MaLR 19 365 0 472 184 122 10 chr11 14279077 14279175 -136504378 - MER81 DNA DNA -1 113 5 303 235 24 12 chr11 14279268 14279353 -136504200 + MIR SINE MIR 128 213 -49 238 348 0 11 chr11 14279894 14279986 -136503567 + MER5A DNA MER1_type 95 185 -4 191 345 53 18 chr11 14279984 14280097 -136503456 + L2 LINE L2 3144 3260 -12 * 257 295 152 9 chr11 14281355 14281460 -136502093 + L2 LINE L2 3151 3270 -2 280 232 49 49 chr11 14281483 14281565 -136501988 - MIR SINE MIR -118 144 63 2469 119 86 0 chr11 14282222 14282616 -136500937 - MSTA LTR MaLR 0 428 1 547 224 22 30 chr11 14282672 14282806 -136500747 - MER117 DNA MER1_type -61 136 4 2243 12 0 0 chr11 14285315 14285567 -136497986 - L1P1 LINE L1 -594 5561 5310 1365 53 29 0 chr11 14285567 14285733 -136497820 + L1PA3 LINE L1 5980 6155 0 603 247 28 22 chr11 14285744 14285922 -136497631 - Charlie8 DNA MER1_type -2152 265 87 2039 137 7 13 chr11 14286117 14286424 -136497129 - AluJo SINE Alu -7 305 1 431 242 85 20 chr11 14286865 14287018 -136496535 - HsTC2 DNA Tc2 -1009 889 727 24 32 0 0 chr11 14287117 14287148 -136496405 + AT_rich Low_complexity Low_complexity 1 31 0 239 316 84 0 chr11 14287567 14287662 -136495891 - MIR SINE MIR -79 183 81 864 194 10 36 chr11 14287895 14288091 -136495462 - L1PB4 LINE L1 -1 6155 5965 2061 155 3 18 chr11 14288143 14288485 -136495068 + MER1B DNA MER1_type 1 337 0 566 256 109 14 chr11 14288935 14289146 -136494407 - L1M4 LINE L1 -2448 3698 3468 21 26 0 26 chr11 14289146 14289165 -136494388 + AT_rich Low_complexity Low_complexity 1 19 -19 12525 27 0 0 chr11 14289165 14291378 -136492175 - L1PA3 LINE L1 0 6155 3943 21 26 0 26 chr11 14291378 14291397 -136492156 + AT_rich Low_complexity Low_complexity 19 38 0 1211 253 35 59 chr11 14291401 14291892 -136491661 + L1M4 LINE L1 3689 4167 -1979 1111 234 31 0 chr11 14291894 14292184 -136491369 + L1MC3 LINE L1 7324 7622 -163 953 169 0 0 chr11 14292313 14292494 -136491059 - FRAM SINE Alu 0 185 5 253 210 16 16 chr11 14292965 14293027 -136490526 - MER103 DNA DNA -92 74 13 22 0 0 0 chr11 14293472 14293494 -136490059 + AT_rich Low_complexity Low_complexity 1 22 0 2530 127 6 3 chr11 14293683 14294046 -136489507 - THE1B LTR MaLR 0 364 1 858 302 109 9 chr11 14294109 14294660 -136488893 - L2 LINE L2 -2 3311 2707 395 350 14 32 chr11 14295132 14295352 -136488201 + L2 LINE L2 2065 2280 -1034 1785 174 3 7 chr11 14295352 14295651 -136487902 - AluSx SINE Alu -10 302 5 190 266 62 62 chr11 14295687 14295800 -136487753 + L2 LINE L2 3200 3312 -1 684 275 153 14 chr11 14295807 14296251 -136487302 + L2 LINE L2 553 1058 -2256 195 284 53 32 chr11 14296265 14296360 -136487193 - L2 LINE L2 -42 3230 3134 261 83 0 0 chr11 14297537 14297573 -136485980 + (TG)n Simple_repeat Simple_repeat 1 36 0 * 360 0 0 0 chr11 14297572 14297612 -136485941 + (GA)n Simple_repeat Simple_repeat 1 40 0 1615 178 16 33 chr11 14297850 14298216 -136485337 - L1MA4 LINE L1 -5 6295 5936 638 170 9 0 chr11 14298230 14298342 -136485211 - FLAM_A SINE Alu -11 131 19 413 317 6 49 chr11 14298738 14298902 -136484651 - MER117 DNA MER1_type 0 197 41 544 293 19 56 chr11 14300474 14300689 -136482864 + MIR SINE MIR 56 262 0 219 293 13 13 chr11 14300786 14300861 -136482692 + CT-rich Low_complexity Low_complexity 4 78 0 1891 102 55 0 chr11 14301075 14301364 -136482189 + AluSg SINE Alu 15 317 0 475 268 118 18 chr11 14301578 14301798 -136481755 - MIR SINE MIR 0 262 21 282 291 34 8 chr11 14302278 14302395 -136481158 + MIR SINE MIR 134 253 -9 200 143 24 24 chr11 14302412 14302454 -136481099 + GA-rich Low_complexity Low_complexity 2 43 0 187 306 139 29 chr11 14304663 14304836 -136478717 - L2 LINE L2 -863 2451 2260 694 289 43 30 chr11 14305498 14305733 -136477820 + MIR SINE MIR 18 255 -7 231 175 12 125 chr11 14307298 14307378 -136476175 + MIR SINE MIR 69 139 -69 394 264 9 0 chr11 14307491 14307597 -136475956 + MER94 DNA DNA 4 110 -24 341 189 54 0 chr11 14307796 14307870 -136475683 - MER53 DNA DNA -2 187 110 266 115 77 39 chr11 14308085 14308137 -136475416 - L1MB7 LINE L1 0 6184 6131 227 394 37 11 chr11 14308364 14308552 -136475001 - L2 LINE L2 -236 3036 2844 201 333 40 30 chr11 14308570 14308669 -136474884 - L2 LINE L2 -855 2459 2360 347 276 10 0 chr11 14309200 14309298 -136474255 - L1ME4a LINE L1 -66 6055 5957 1129 207 5 0 chr11 14309455 14309663 -136473890 - MER3 DNA MER1_type 0 209 1 1325 254 112 74 chr11 14309768 14310380 -136473173 - L1ME3A LINE L1 -13 6157 5569 1956 133 177 11 chr11 14310380 14310562 -136472991 + MSTA LTR MaLR 1 151 -277 189 0 0 0 chr11 14310562 14310583 -136472970 + (TC)n Simple_repeat Simple_repeat 1 21 0 1956 133 177 11 chr11 14310583 14310767 -136472786 + MSTA LTR MaLR 151 428 0 1325 254 112 74 chr11 14310767 14311444 -136472109 - L1ME3A LINE L1 -601 5569 4805 983 207 103 0 chr11 14311444 14311647 -136471906 + MER58A DNA MER1_type 1 224 0 1325 254 112 74 chr11 14311647 14311817 -136471736 - L1ME3A LINE L1 -1365 4805 4643 22 35 0 0 chr11 14311822 14311851 -136471702 + AT_rich Low_complexity Low_complexity 1 29 0 411 255 21 28 chr11 14311857 14311998 -136471555 - L1ME4a LINE L1 -218 5903 5764 347 301 45 0 chr11 14312059 14312192 -136471361 + L1ME LINE L1 5598 5736 -385 240 125 0 25 chr11 14312324 14312364 -136471189 - tRNA-Gly-GGA tRNA tRNA -36 39 1 392 292 10 0 chr11 14313386 14313482 -136470071 + MER5B DNA MER1_type 50 146 -32 550 316 71 15 chr11 14313792 14313988 -136469565 - MIR SINE MIR -30 232 26 280 270 0 0 chr11 14314037 14314100 -136469453 + MIR SINE MIR 197 259 -3 1518 181 26 0 chr11 14316110 14316380 -136467173 - L1MD3 LINE L1 0 7995 7719 854 136 0 0 chr11 14316399 14316517 -136467036 + FLAM_C SINE Alu 1 118 -15 12266 42 2 9 chr11 14316545 14318744 -136464809 - L1PA5 LINE L1 -5 6149 3960 384 181 0 0 chr11 14319904 14319987 -136463566 + (TG)n Simple_repeat Simple_repeat 2 84 0 498 323 20 92 chr11 14320093 14320396 -136463157 - L2 LINE L2 -27 3245 2965 323 233 108 34 chr11 14320404 14320580 -136462973 + LTR33 LTR ERVL 27 215 -306 1081 300 44 50 chr11 14320682 14321246 -136462307 + MER115 DNA AcHobo 133 693 0 314 194 58 48 chr11 14321315 14321418 -136462135 + LTR33 LTR ERVL 415 518 -3 209 69 0 0 chr11 14321424 14321453 -136462100 - L2 LINE L2 -305 2967 2939 261 57 0 0 chr11 14323294 14323329 -136460224 + (GA)n Simple_repeat Simple_repeat 1 35 0 264 271 56 56 chr11 14323626 14323770 -136459783 + HAL1 LINE L1 1464 1607 -900 972 270 124 45 chr11 14323910 14324655 -136458898 - L2 LINE L2 -2 3311 2517 251 307 64 14 chr11 14324667 14324807 -136458746 + HAL1b LINE L1 1187 1333 -15 798 300 108 13 chr11 14325073 14325461 -136458092 - LTR16A LTR ERVL 0 450 1 608 284 130 5 chr11 14325498 14325706 -136457847 + MIR SINE MIR 27 260 -2 2078 129 14 0 chr11 14325762 14326049 -136457504 - AluJo SINE Alu -21 291 1 2732 121 25 39 chr11 14329652 14330090 -136453463 - MSTB1 LTR MaLR 0 432 1 1112 193 10 5 chr11 14330091 14330298 -136453255 - MIR SINE MIR -5 257 50 476 294 69 36 chr11 14330623 14331041 -136452512 + L1ME4a LINE L1 2670 3101 -3045 694 101 0 0 chr11 14331096 14331185 -136452368 - 5S rRNA rRNA -31 90 2 281 325 25 25 chr11 14331574 14331731 -136451822 + MLT1J LTR MaLR 347 503 -8 355 305 51 25 chr11 14332343 14332461 -136451092 - LTR33A LTR ERVL -345 178 58 399 297 42 18 chr11 14332678 14332843 -136450710 - LTR33 LTR ERVL -22 499 331 1529 210 82 2 chr11 14332843 14333286 -136450267 + MLT1F LTR MaLR 1 465 -77 1829 289 75 13 chr11 14333354 14333969 -136449584 - MLT2F LTR ERVL -10 653 1 957 307 52 40 chr11 14334002 14334669 -136448884 + L1ME4a LINE L1 3739 4414 -1732 1630 226 9 0 chr11 14334671 14335012 -136448541 - L1MC4 LINE L1 -467 7575 7232 629 305 93 28 chr11 14335030 14335427 -136448126 + L1ME4a LINE L1 5491 5913 -208 21 82 0 0 chr11 14335546 14335595 -136447958 + AT_rich Low_complexity Low_complexity 1 49 0 2819 106 48 14 chr11 14336040 14336454 -136447099 + MSTA LTR MaLR 1 428 0 282 289 178 22 chr11 14336475 14336610 -136446943 + MIR3 SINE MIR 46 201 -7 224 238 32 16 chr11 14337370 14337433 -136446120 - MIR SINE MIR -128 134 71 442 236 0 0 chr11 14337534 14337623 -136445930 - L2 LINE L2 0 3272 3184 2813 84 6 0 chr11 14337757 14338115 -136445438 - L1PB1 LINE L1 0 6151 5792 642 132 0 0 chr11 14338221 14338312 -136445241 + FRAM SINE Alu 74 164 -12 279 254 17 0 chr11 14338329 14338388 -136445165 + L2 LINE L2 3223 3282 -31 1007 224 72 99 chr11 14338388 14338910 -136444643 + MLT1H LTR MaLR 1 549 0 1999 190 3 6 chr11 14339594 14339942 -136443611 + MLT1A1 LTR MaLR 19 365 0 510 184 122 10 chr11 14340529 14340627 -136442926 - MER81 DNA DNA -1 113 5 326 235 24 12 chr11 14340720 14340805 -136442748 + MIR SINE MIR 128 213 -49 261 348 0 11 chr11 14341346 14341438 -136442115 + MER5A DNA MER1_type 95 185 -4 224 345 53 18 chr11 14341436 14341549 -136442004 + L2 LINE L2 3144 3260 -12 * 291 295 152 9 chr11 14342807 14342912 -136440641 + L2 LINE L2 3151 3270 -2 307 232 49 49 chr11 14342935 14343017 -136440536 - MIR SINE MIR -118 144 63 2611 119 86 0 chr11 14343674 14344068 -136439485 - MSTA LTR MaLR 0 428 1 549 224 22 30 chr11 14344124 14344258 -136439295 - MER117 DNA MER1_type -61 136 4 12570 25 0 0 chr11 14346767 14348386 -136435167 - L1P1 LINE L1 -594 5561 3943 1244 253 35 59 chr11 14348409 14348900 -136434653 + L1M4 LINE L1 3689 4167 -1979 1135 234 31 0 chr11 14348902 14349192 -136434361 + L1MC3 LINE L1 7324 7622 -163 941 169 0 0 chr11 14349321 14349502 -136434051 - FRAM SINE Alu 0 185 5 257 210 16 16 chr11 14349973 14350035 -136433518 - MER103 DNA DNA -92 74 13 22 0 0 0 chr11 14350480 14350502 -136433051 + AT_rich Low_complexity Low_complexity 1 22 0 2668 127 6 3 chr11 14350691 14351054 -136432499 - THE1B LTR MaLR 0 364 1 990 300 109 9 chr11 14351117 14351668 -136431885 - L2 LINE L2 -2 3311 2707 184 368 103 23 chr11 14351786 14352096 -136431457 + L2 LINE L2 183 517 -2797 448 350 14 32 chr11 14352140 14352360 -136431193 + L2 LINE L2 2065 2280 -1034 1774 174 3 7 chr11 14352360 14352659 -136430894 - AluSx SINE Alu -10 302 5 223 266 62 62 chr11 14352695 14352808 -136430745 + L2 LINE L2 3200 3312 -1 243 88 0 0 chr11 14352909 14352943 -136430610 + (TA)n Simple_repeat Simple_repeat 2 35 0 5544 166 7 5 chr11 14352943 14354514 -136429039 - L1P5 LINE L1 -371 5780 4204 442 198 73 0 chr11 14354522 14354618 -136428935 - L1 LINE L1 -2060 4086 3984 443 185 11 22 chr11 14354620 14354712 -136428841 - L2 LINE L2 -967 2347 2257 639 328 189 20 chr11 14354807 14355417 -136428136 - L2 LINE L2 -370 2944 2232 188 67 33 0 chr11 14355453 14355483 -136428070 + (TG)n Simple_repeat Simple_repeat 1 31 0 2043 161 24 59 chr11 14355635 14356334 -136427219 - MER4A LTR ERV1 0 689 1 283 345 59 77 chr11 14357441 14357884 -136425669 - L2 LINE L2 -3 3269 2835 420 306 15 0 chr11 14358252 14358386 -136425167 - MIR SINE MIR -121 141 6 227 31 31 0 chr11 14358919 14358951 -136424602 + (TC)n Simple_repeat Simple_repeat 2 34 0 333 0 0 0 chr11 14359712 14359749 -136423804 + (CA)n Simple_repeat Simple_repeat 1 37 0 2378 200 114 82 chr11 14361435 14362204 -136421349 - MER21B LTR ERV1 -69 794 1 1546 218 19 3 chr11 14362543 14362860 -136420693 + MER110 LTR ERV1 10 331 -160 340 333 63 35 chr11 14363012 14363186 -136420367 + L2 LINE L2 2902 3080 -192 369 309 68 65 chr11 14364193 14364517 -136419036 - L2 LINE L2 -49 3264 2940 1057 98 0 0 chr11 14364693 14364826 -136418727 - AluSq/x SINE Alu -179 133 1 600 269 32 13 chr11 14364972 14365128 -136418425 + MIR SINE MIR 2 160 -102 3070 180 12 23 chr11 14366146 14366707 -136416846 - L1MB8 LINE L1 -5 6173 5619 185 370 0 22 chr11 14366868 14366960 -136416593 - L2 LINE L2 -32 3240 3151 676 217 123 18 chr11 14366964 14367181 -136416372 - MIR SINE MIR -3 259 19 725 277 64 12 chr11 14367185 14367434 -136416119 + MIR SINE MIR 1 262 0 222 156 0 0 chr11 14367528 14367573 -136415980 + A-rich Low_complexity Low_complexity 1 45 0 187 347 13 40 chr11 14368477 14368552 -136415001 + L2 LINE L2 3112 3184 -88 354 296 80 8 chr11 14368652 14368777 -136414776 - MIR SINE MIR -72 190 57 1750 154 37 3 chr11 14368998 14369296 -136414257 + AluJb SINE Alu 1 308 -4 486 283 97 18 chr11 14370299 14370498 -136413055 + MIR SINE MIR 20 230 -32 1739 94 34 0 chr11 14370603 14370838 -136412715 - AluSp SINE Alu -70 243 1 24 0 0 0 chr11 14371025 14371049 -136412504 + AT_rich Low_complexity Low_complexity 1 24 0 2292 94 0 0 chr11 14371050 14371338 -136412215 - AluSx SINE Alu -24 288 1 621 152 0 45 chr11 14371762 14371874 -136411679 - FRAM SINE Alu -1 175 69 1171 239 81 0 chr11 14371986 14372296 -136411257 - L1ME1 LINE L1 -25 6141 5807 711 283 25 10 chr11 14372345 14372543 -136411010 + MIR SINE MIR 59 259 -3 21 0 0 0 chr11 14372543 14372564 -136410989 + AT_rich Low_complexity Low_complexity 1 21 0 539 252 0 0 chr11 14373123 14373238 -136410315 - MIR SINE MIR -118 144 30 964 196 50 10 chr11 14373239 14373438 -136410115 + MER3 DNA MER1_type 3 209 0 250 303 106 38 chr11 14374316 14374448 -136409105 - MIR SINE MIR -15 247 107 190 299 45 30 chr11 14374438 14374505 -136409048 - MIR3 SINE MIR -126 82 15 * 193 262 24 0 chr11 14375322 14375364 -136408189 - L2 LINE L2 -21 3251 3209 4316 248 80 27 chr11 14375662 14377351 -136406202 + L1ME3A LINE L1 3700 5557 -610 180 0 0 0 chr11 14377351 14377371 -136406182 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4316 248 80 27 chr11 14377371 14378015 -136405538 + L1ME3A LINE L1 5557 6165 -2 477 343 28 58 chr11 14378381 14378745 -136404808 - L2 LINE L2 -9 3263 2911 215 269 0 0 chr11 14378879 14378931 -136404622 + MIR SINE MIR 54 105 -157 2458 101 33 19 chr11 14379008 14379376 -136404177 + L1MA1 LINE L1 5930 6302 0 2704 16 0 7 chr11 14379385 14379691 -136403862 + AluY SINE Alu 1 304 -7 943 277 43 0 chr11 14380640 14380875 -136402678 - MIR SINE MIR 0 262 18 180 111 0 0 chr11 14381123 14381150 -136402403 + (T)n Simple_repeat Simple_repeat 1 27 0 225 298 18 0 chr11 14381830 14381887 -136401666 - L2 LINE L2 -16 3256 3199 245 330 110 0 chr11 14382255 14382364 -136401189 - L2 LINE L2 -2 3270 3150 1321 237 61 53 chr11 14382369 14382841 -136400712 + MLT2B3 LTR ERVL 1 547 -7 313 294 98 28 chr11 14383470 14383613 -136399940 - L2 LINE L2 -20 3293 3141 30 45 0 0 chr11 14383649 14383693 -136399860 + AT_rich Low_complexity Low_complexity 1 44 0 411 208 26 0 chr11 14383994 14384071 -136399482 + FRAM/FAM SINE Alu 11 89 -87 277 358 0 11 chr11 14384145 14384240 -136399313 - L2 LINE L2 -207 3065 2972 505 279 132 5 chr11 14385036 14385233 -136398320 - MIR SINE MIR 0 262 41 501 268 52 20 chr11 14385230 14385383 -136398170 - MIR SINE MIR -79 183 26 * 189 0 0 0 chr11 14385647 14385668 -136397885 + (T)n Simple_repeat Simple_repeat 1 21 0 1245 194 8 28 chr11 14390458 14390706 -136392847 + L1MC4 LINE L1 7454 7696 -346 1500 166 26 26 chr11 14390707 14391009 -136392544 + MER33 DNA MER1_type 1 302 -22 1279 172 52 85 chr11 14391041 14391407 -136392146 + L1MC4 LINE L1 7687 8040 -2 301 294 134 0 chr11 14391687 14391806 -136391747 + HAL1 LINE L1 1219 1353 -1154 36 0 0 0 chr11 14391817 14391853 -136391700 + AT_rich Low_complexity Low_complexity 1 36 0 2208 111 0 0 chr11 14391853 14392141 -136391412 - AluSx SINE Alu -24 288 1 282 310 123 15 chr11 14392265 14392468 -136391085 + HAL1 LINE L1 1450 1674 -833 345 308 78 75 chr11 14393105 14393162 -136390391 + L1 LINE L1 2740 2795 -3351 2671 136 44 7 chr11 14393162 14393573 -136389980 + MSTB LTR MaLR 1 426 0 345 308 78 75 chr11 14393573 14393953 -136389600 + L1 LINE L1 2795 3178 -2968 319 193 23 0 chr11 14394515 14394603 -136388950 + CT-rich Low_complexity Low_complexity 2 91 0 259 286 79 57 chr11 14394603 14394743 -136388810 + MIR SINE MIR 44 186 -76 241 344 26 7 chr11 14394824 14394975 -136388578 + L1 LINE L1 3788 3941 -2205 2451 42 0 3 chr11 14394975 14395259 -136388294 + AluY SINE Alu 14 296 -15 884 158 11 84 chr11 14395450 14395640 -136387913 - AluJb SINE Alu -2 310 135 225 244 59 50 chr11 14395733 14395852 -136387701 + L1 LINE L1 4326 4445 -1701 567 241 107 18 chr11 14396419 14396851 -136386702 - LTR33 LTR ERVL -2 519 25 257 269 51 0 chr11 14396943 14397021 -136386532 - HAL1 LINE L1 -2422 85 4 1805 188 152 5 chr11 14397392 14397807 -136385746 + MLT2B1 LTR ERVL 1 486 -34 442 31 15 15 chr11 14397807 14397872 -136385681 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 1805 188 152 5 chr11 14397872 14397898 -136385655 + MLT2B1 LTR ERVL 486 507 -13 389 326 78 8 chr11 14398209 14398454 -136385099 + L2 LINE L2 2427 2688 -626 272 263 40 10 chr11 14398563 14398662 -136384891 - L2 LINE L2 0 3313 3212 404 325 60 40 chr11 14398679 14398977 -136384576 + L1ME LINE L1 5360 5663 -458 2248 118 3 0 chr11 14399031 14399327 -136384226 - AluSx SINE Alu -15 297 1 337 319 72 14 chr11 14400336 14400474 -136383079 + MIR3 SINE MIR 18 163 -45 1034 206 143 20 chr11 14400860 14401112 -136382441 + Charlie1a DNA MER1_type 1 283 -1172 1498 138 0 40 chr11 14401120 14401367 -136382186 + L1PA8 LINE L1 7 243 -6218 4204 142 34 91 chr11 14401367 14402401 -136381152 + pTR5 LTR ERV1 745 2131 -475 183 42 0 0 chr11 14402401 14402425 -136381128 + (G)n Simple_repeat Simple_repeat 1 24 0 4204 142 34 91 chr11 14402425 14402876 -136380677 + pTR5 LTR ERV1 2131 2606 0 30945 112 9 27 chr11 14402876 14409093 -136374460 + L1PA8 LINE L1 253 6460 -27 5840 161 35 44 chr11 14409093 14410320 -136373233 + Charlie1a DNA MER1_type 240 1455 0 189 379 53 0 chr11 14410737 14410832 -136372721 - L2 LINE L2 -56 3216 3117 365 306 9 18 chr11 14411916 14412027 -136371526 + L2 LINE L2 3136 3245 -27 1591 128 68 68 chr11 14412151 14412447 -136371106 - AluJo SINE Alu -16 296 1 2303 106 0 0 chr11 14412720 14413022 -136370531 + AluSx SINE Alu 1 302 -10 695 255 109 21 chr11 14414437 14414676 -136368877 - MIR SINE MIR 0 262 3 272 296 26 17 chr11 14415310 14415425 -136368128 + T-rich Low_complexity Low_complexity 3 118 0 811 98 0 0 chr11 14415463 14415565 -136367988 + AluSx SINE Alu 1 102 -211 1508 103 25 0 chr11 14415620 14415823 -136367730 + AluSx SINE Alu 99 306 -4 646 297 91 13 chr11 14416608 14416840 -136366713 + MIR SINE MIR 13 262 0 213 271 43 29 chr11 14417183 14417253 -136366300 - MIR SINE MIR -171 91 21 418 319 122 18 chr11 14417923 14418152 -136365401 + MIR SINE MIR 8 260 -2 255 289 83 107 chr11 14419396 14419759 -136363794 - L2 LINE L2 -9 3263 2910 823 169 8 0 chr11 14419801 14419931 -136363622 + Tigger4(Zombi) DNA MER2_type 1 131 -2600 2052 118 6 72 chr11 14419934 14420297 -136363256 + Tigger4(Zombi) DNA MER2_type 2393 2731 0 250 314 109 19 chr11 14420297 14420453 -136363100 - L2 LINE L2 -466 2848 2679 186 218 36 55 chr11 14421006 14421061 -136362492 - L2 LINE L2 -18 3254 3201 377 268 0 10 chr11 14421095 14421192 -136362361 - MER46C DNA MER2_type 0 338 243 1946 115 50 4 chr11 14421249 14421527 -136362026 + AluSx SINE Alu 1 291 -21 259 229 0 71 chr11 14422723 14422793 -136360760 + L2 LINE L2 3238 3302 -11 323 324 56 7 chr11 14423536 14423678 -136359875 - L2 LINE L2 -2 3311 3163 629 239 38 19 chr11 14423920 14424079 -136359474 - MIR SINE MIR -13 249 88 760 190 57 0 chr11 14424163 14424321 -136359232 - L1MD2 LINE L1 -10 6349 6183 1675 178 10 13 chr11 14426047 14426350 -136357203 - AluJo SINE Alu -6 306 5 295 305 137 15 chr11 14427243 14427374 -136356179 + L2 LINE L2 3085 3231 -41 261 347 0 0 chr11 14427436 14427534 -136356019 + Charlie4 DNA MER1_type 1860 1957 -4 313 162 14 14 chr11 14429782 14429856 -136353697 + GA-rich Low_complexity Low_complexity 3 76 0 191 203 16 0 chr11 14431847 14431911 -136351642 + (TAGA)n Simple_repeat Simple_repeat 3 67 0 247 327 154 10 chr11 14432017 14432225 -136351328 + MIR SINE MIR 15 252 -10 234 260 52 52 chr11 14432331 14432408 -136351145 + L2 LINE L2 3169 3245 -27 737 271 72 32 chr11 14432466 14432536 -136351017 - MIR SINE MIR 0 262 196 607 252 126 6 chr11 14432536 14432695 -136350858 + MER5B DNA MER1_type 1 178 0 737 271 72 32 chr11 14432695 14432875 -136350678 - MIR SINE MIR -66 196 2 219 255 0 0 chr11 14433057 14433104 -136350449 + MIR SINE MIR 82 128 -80 363 185 15 0 chr11 14433702 14433767 -136349786 + L2 LINE L2 3246 3311 -2 640 242 81 31 chr11 14434312 14434473 -136349080 + MIR SINE MIR 7 175 -87 1688 150 6 70 chr11 14435218 14435532 -136348021 - AluJo SINE Alu -17 295 2 1799 206 194 15 chr11 14435543 14436157 -136347396 - L1MC4 LINE L1 0 8042 7239 206 192 13 51 chr11 14436160 14436238 -136347315 + (TTTA)n Simple_repeat Simple_repeat 1 75 0 2307 66 14 7 chr11 14436347 14436636 -136346917 - AluY SINE Alu -20 291 1 915 259 31 42 chr11 14436959 14437218 -136346335 - MIR SINE MIR 0 262 7 2623 139 10 10 chr11 14439708 14440118 -136343435 + L1MB5 LINE L1 5765 6174 0 377 288 142 34 chr11 14441223 14441428 -136342125 + MIR SINE MIR 2 228 -34 1991 149 10 80 chr11 14441474 14441698 -136341855 - MLT1A1 LTR MaLR 0 365 178 1876 152 0 3 chr11 14441698 14441987 -136341566 - AluJo SINE Alu -16 296 9 1991 149 10 80 chr11 14441987 14442151 -136341402 - MLT1A1 LTR MaLR -187 178 4 355 333 133 27 chr11 14442372 14442666 -136340887 + LTR16C LTR ERVL 157 481 -10 1201 219 23 0 chr11 14442717 14442932 -136340621 - MER58A DNA MER1_type 0 224 5 622 231 90 1 chr11 14443272 14443548 -136340005 - MER46C DNA MER2_type 0 338 3 814 183 157 5 chr11 14444062 14444253 -136339300 + MIR SINE MIR 8 227 -35 2244 105 3 0 chr11 14444996 14445290 -136338263 - AluSq SINE Alu -18 295 1 631 306 108 27 chr11 14445915 14446693 -136336860 + L1MC4a LINE L1 3977 4817 -1329 333 197 13 13 chr11 14447129 14447205 -136336348 + LTR33 LTR ERVL 426 501 -20 392 307 132 18 chr11 14447221 14447501 -136336052 + L1MC4a LINE L1 4967 5278 -868 229 167 48 36 chr11 14447542 14447626 -136335927 + (TA)n Simple_repeat Simple_repeat 1 85 0 21 0 0 0 chr11 14447632 14447653 -136335900 + AT_rich Low_complexity Low_complexity 1 21 0 2085 114 0 26 chr11 14447653 14447960 -136335593 - AluSx SINE Alu -13 299 1 784 294 97 20 chr11 14448042 14448466 -136335087 + L1MC4a LINE L1 5476 5819 -302 2070 154 0 0 chr11 14448612 14448918 -136334635 - AluSx SINE Alu -6 306 1 200 259 35 17 chr11 14449134 14449192 -136334361 + MIR SINE MIR 86 144 -118 257 238 0 109 chr11 14449708 14449809 -136333744 + MER89 LTR ERV1 5 94 -465 * 1583 185 51 46 chr11 14449787 14450138 -136333415 + MER89 LTR ERV1 207 559 0 520 215 52 22 chr11 14450813 14450948 -136332605 + MER103 DNA DNA 26 164 -2 298 179 77 39 chr11 14451833 14451911 -136331642 + L2 LINE L2 3191 3271 -1 251 239 106 62 chr11 14452515 14452628 -136330925 - MIR SINE MIR -10 252 135 753 281 129 33 chr11 14452849 14453702 -136329851 - L1ME3A LINE L1 -273 5897 4943 6284 158 16 40 chr11 14453713 14454753 -136328800 - L1MC1 LINE L1 -6 6327 5264 2036 139 0 10 chr11 14454753 14455064 -136328489 - AluSx SINE Alu 0 308 1 2255 93 21 0 chr11 14455068 14455358 -136328195 - AluSx SINE Alu -16 296 1 6284 158 16 40 chr11 14455358 14455903 -136327650 - L1MC1 LINE L1 -1072 5261 4759 1316 319 148 40 chr11 14455903 14456027 -136327526 + L2 LINE L2 1566 1675 -1639 954 28 0 0 chr11 14456027 14456134 -136327419 + L1PA4 LINE L1 6046 6152 -3 1316 319 148 40 chr11 14456134 14457249 -136326304 + L2 LINE L2 1675 2939 -375 2078 157 3 3 chr11 14457330 14457636 -136325917 + AluJo SINE Alu 1 306 -6 342 284 169 22 chr11 14457788 14458013 -136325540 - MIR SINE MIR 0 262 5 207 200 12 18 chr11 14458473 14458555 -136324998 - MIR SINE MIR -66 142 21 421 189 94 31 chr11 14458945 14459072 -136324481 + L1ME4a LINE L1 5970 6104 -17 749 221 16 0 chr11 14459090 14459217 -136324336 - FLAM_A SINE Alu -4 129 1 490 312 32 37 chr11 14460507 14460696 -136322857 + MIR SINE MIR 11 198 -64 611 303 93 11 chr11 14460890 14461246 -136322307 - L1ME4a LINE L1 -23 6098 5714 4417 147 55 3 chr11 14461929 14462689 -136320864 - L1PA16 LINE L1 -20 6146 5353 514 250 45 13 chr11 14463278 14463434 -136320119 + MIR SINE MIR 70 230 -32 2601 127 42 10 chr11 14463441 14463850 -136319703 + MER61B LTR ERV1 4 425 0 189 0 0 0 chr11 14464102 14464123 -136319430 + (TG)n Simple_repeat Simple_repeat 2 22 0 280 309 66 29 chr11 14464357 14464493 -136319060 + MIR SINE MIR 3 143 -119 1664 141 59 40 chr11 14464743 14465047 -136318506 - AluJo SINE Alu -1 311 2 249 196 107 0 chr11 14465091 14465147 -136318406 - MIR SINE MIR -84 178 117 263 306 116 56 chr11 14465702 14465918 -136317635 - MIR SINE MIR -14 248 20 233 289 96 0 chr11 14467459 14467542 -136316011 + L2 LINE L2 2972 3062 -210 432 318 20 7 chr11 14467637 14467785 -136315768 + MER5B DNA MER1_type 26 175 -3 451 293 0 0 chr11 14467808 14467914 -136315639 + L2 LINE L2 3208 3313 0 516 274 17 0 chr11 14468035 14468152 -136315401 + L2 LINE L2 3193 3311 -2 378 300 100 0 chr11 14468207 14468327 -136315226 + MIR3 SINE MIR 56 187 -21 3714 160 36 46 chr11 14468431 14469207 -136314346 + LTR1 LTR ERV1 1 768 -17 2259 101 0 0 chr11 14469230 14469526 -136314027 - AluSg SINE Alu -14 296 1 909 243 131 16 chr11 14469911 14470224 -136313329 + L2 LINE L2 2614 2962 -352 387 273 59 37 chr11 14470584 14470771 -136312782 - MIR SINE MIR -51 211 21 343 299 87 31 chr11 14471950 14472077 -136311476 - L2 LINE L2 0 3272 3139 687 222 52 26 chr11 14472289 14472483 -136311070 - MIR SINE MIR -32 230 32 593 304 29 58 chr11 14472484 14472797 -136310756 - L1MC4a LINE L1 -1983 5825 5522 733 256 99 67 chr11 14473105 14473671 -136309882 + MLT1L LTR MaLR 2 615 0 237 234 43 0 chr11 14473809 14473903 -136309650 + (TA)n Simple_repeat Simple_repeat 1 98 0 777 235 16 33 chr11 14473915 14474098 -136309455 - MIR SINE MIR -73 189 10 381 286 158 15 chr11 14474096 14474299 -136309254 + L2 LINE L2 2313 2544 -770 * 264 360 79 14 chr11 14474441 14474580 -136308973 + L2 LINE L2 2913 3060 -212 345 248 113 45 chr11 14475574 14475707 -136307846 + MIR SINE MIR 50 191 -71 197 245 0 38 chr11 14476373 14476426 -136307127 + L2 LINE L2 3221 3271 -1 182 203 29 101 chr11 14476978 14477047 -136306506 + MIR SINE MIR 178 241 -21 1818 158 37 79 chr11 14477712 14478092 -136305461 + MLT1A1 LTR MaLR 2 365 0 29 47 0 0 chr11 14478406 14478449 -136305104 + AT_rich Low_complexity Low_complexity 1 43 0 308 206 54 22 chr11 14478667 14478759 -136304794 - MER117 DNA MER1_type -88 109 15 404 227 93 58 chr11 14478760 14478932 -136304621 - MER104 DNA MER2_type 0 180 3 397 283 88 19 chr11 14479368 14479527 -136304026 + MIR SINE MIR 80 249 -13 433 325 60 67 chr11 14480365 14480663 -136302890 - L2 LINE L2 0 3272 2977 556 305 79 5 chr11 14481209 14481399 -136302154 - MIR SINE MIR -34 228 25 248 230 115 23 chr11 14481591 14481678 -136301875 - L2 LINE L2 -497 2817 2723 186 320 81 30 chr11 14482971 14483168 -136300385 + L2 LINE L2 2233 2439 -875 * 490 304 106 94 chr11 14483160 14483268 -136300285 - L2 LINE L2 0 3272 3167 2013 191 22 11 chr11 14483268 14483629 -136299924 + MLT1A1 LTR MaLR 1 365 0 490 304 106 94 chr11 14483629 14484016 -136299537 - L2 LINE L2 -105 3167 2773 439 224 26 35 chr11 14484050 14484166 -136299387 - L2 LINE L2 -9 3304 3190 230 317 128 12 chr11 14484197 14484361 -136299192 - L2 LINE L2 -647 2667 2485 392 350 56 54 chr11 14484438 14484884 -136298669 - L2 LINE L2 -1648 1666 1220 545 173 12 9 chr11 14484923 14485096 -136298457 + MER2 DNA MER2_type 1 211 -134 24 0 0 0 chr11 14485103 14485127 -136298426 + AT_rich Low_complexity Low_complexity 1 24 0 729 213 170 43 chr11 14485185 14485466 -136298087 + MLT1D LTR MaLR 31 347 -158 1959 143 87 15 chr11 14485466 14485562 -136297991 + MER1B DNA MER1_type 1 89 -2623 3290 69 29 40 chr11 14485562 14486011 -136297542 + MLT2A1 LTR ERVL 1 444 0 1959 143 87 15 chr11 14486011 14486235 -136297318 + MER1B DNA MER1_type 89 339 0 985 182 0 6 chr11 14486235 14486397 -136297156 + MLT1D LTR MaLR 340 500 -5 329 323 101 12 chr11 14486411 14486659 -136296894 - L2 LINE L2 -2104 1210 941 219 339 63 42 chr11 14486765 14486954 -136296599 + L2 LINE L2 2588 2780 -534 486 273 162 23 chr11 14487208 14487424 -136296129 - MIR SINE MIR 0 262 17 301 238 135 16 chr11 14487747 14487873 -136295680 - L2 LINE L2 -1064 2250 2110 660 196 153 37 chr11 14487880 14488043 -136295510 + MER20 DNA MER1_type 8 189 -30 635 244 6 6 chr11 14488046 14488222 -136295331 + L1MA9 LINE L1 5029 5204 -942 1321 171 4 13 chr11 14488223 14488451 -136295102 + AluJo SINE Alu 87 312 0 4261 179 38 52 chr11 14488457 14489061 -136294492 + L1MA9 LINE L1 5192 5786 -526 306 50 0 0 chr11 14489061 14489101 -136294452 + (TG)n Simple_repeat Simple_repeat 2 41 0 4261 179 38 52 chr11 14489101 14489577 -136293976 + L1MA9 LINE L1 5786 6267 -45 2896 163 4 6 chr11 14489600 14490066 -136293487 + LTR42 LTR ERVL 1 465 -30 407 284 147 33 chr11 14490077 14490376 -136293177 - L2 LINE L2 -1289 2025 1693 338 311 20 66 chr11 14490828 14491024 -136292529 + MER5A DNA MER1_type 3 189 0 2717 218 55 34 chr11 14491376 14492284 -136291269 - L1MCc LINE L1 -5117 1824 19 246 315 22 11 chr11 14492306 14492395 -136291158 - MIR SINE MIR -108 154 65 873 289 99 12 chr11 14492710 14493052 -136290501 - L2 LINE L2 -18 3295 2924 254 366 28 28 chr11 14493067 14493283 -136290270 + L3 LINE CR1 675 890 -687 2058 103 55 3 chr11 14493539 14493830 -136289723 + AluSq SINE Alu 1 306 -7 336 183 49 24 chr11 14493913 14493995 -136289558 + L2 LINE L2 3192 3275 -38 298 223 71 45 chr11 14494999 14495111 -136288442 + MIR SINE MIR 67 181 -81 329 378 39 0 chr11 14495147 14495274 -136288279 - L2 LINE L2 0 3272 3141 236 281 16 0 chr11 14495733 14495797 -136287756 - MIR SINE MIR -12 250 186 1025 210 62 93 chr11 14496213 14496666 -136286887 + L1ME4a LINE L1 5645 6083 -38 2076 120 63 38 chr11 14497581 14497947 -136285606 + THE1C LTR MaLR 1 375 0 407 231 103 74 chr11 14498023 14498226 -136285327 - L2 LINE L2 0 3313 3105 455 297 30 96 chr11 14498394 14498727 -136284826 - L3 LINE CR1 -553 1024 714 459 288 31 16 chr11 14498821 14499012 -136284541 + L1ME LINE L1 5577 5770 -351 591 281 62 53 chr11 14499439 14499780 -136283773 - L2 LINE L2 -15 3298 2955 33631 102 15 56 chr11 14500226 14506874 -136276679 + L1PA7 LINE L1 2 6154 0 460 221 11 0 chr11 14507108 14507203 -136276350 + L2 LINE L2 3176 3271 -1 414 241 18 112 chr11 14507474 14507644 -136275909 + MIR SINE MIR 90 243 -19 892 269 44 8 chr11 14507677 14507926 -136275627 + MIR SINE MIR 4 261 -1 1195 166 11 5 chr11 14508080 14508267 -136275286 - MER5A DNA MER1_type -1 188 1 232 170 19 19 chr11 14508397 14508450 -136275103 - L2 LINE L2 0 3313 3261 2387 165 28 5 chr11 14508547 14508934 -136274619 + MSTD LTR MaLR 1 396 0 559 198 26 141 chr11 14508947 14509139 -136274414 + MIR SINE MIR 90 259 -3 189 357 21 42 chr11 14509769 14509912 -136273641 - L3b LINE CR1 -324 1259 1120 625 221 35 14 chr11 14510798 14510943 -136272610 + MLT1J2 LTR MaLR 1 148 -302 1048 166 148 42 chr11 14510969 14511045 -136272508 - MER44D DNA MER2_type -1907 584 517 306 0 0 0 chr11 14511045 14511079 -136272474 + (CATA)n Simple_repeat Simple_repeat 3 36 0 1048 166 148 42 chr11 14511079 14511285 -136272268 - MER44D DNA MER2_type -1974 517 2 771 281 100 21 chr11 14511285 14511554 -136271999 + MLT1J2 LTR MaLR 146 436 -14 2468 93 0 0 chr11 14511620 14511931 -136271622 + AluY SINE Alu 1 311 0 341 315 84 14 chr11 14512032 14512175 -136271378 + L2 LINE L2 3111 3263 -9 332 364 8 0 chr11 14512244 14512376 -136271177 - MIR3 SINE MIR -5 203 71 551 53 0 0 chr11 14512628 14512703 -136270850 + L1PA4 LINE L1 6081 6155 0 2178 105 10 3 chr11 14512905 14513199 -136270354 + AluSx SINE Alu 1 296 -16 534 272 31 57 chr11 14513580 14513808 -136269745 + LTR16A1 LTR ERVL 208 429 -28 1932 203 45 7 chr11 14513824 14514242 -136269311 + MLT1C LTR MaLR 34 467 0 250 321 0 0 chr11 14514617 14514701 -136268852 + MIR SINE MIR 131 214 -48 2993 248 42 25 chr11 14514863 14515208 -136268345 + L1ME3A LINE L1 4519 4857 -1313 531 106 0 59 chr11 14515208 14515293 -136268260 + MADE1 DNA Mariner 1 80 0 2993 248 42 25 chr11 14515293 14516556 -136266997 + L1ME3A LINE L1 4857 6163 -7 328 269 244 6 chr11 14517089 14517249 -136266304 + MIR SINE MIR 50 247 -15 296 215 0 11 chr11 14517257 14517350 -136266203 + (ATG)n Simple_repeat Simple_repeat 3 94 0 468 331 20 0 chr11 14517701 14517849 -136265704 + L2 LINE L2 3121 3271 -1 405 307 41 83 chr11 14517965 14518304 -136265249 - L2 LINE L2 -20 3252 2928 199 323 21 37 chr11 14518356 14518545 -136265008 - L2 LINE L2 -452 2862 2677 386 301 67 23 chr11 14519376 14519557 -136263996 + MIR SINE MIR 28 216 -46 22 0 0 0 chr11 14519571 14519593 -136263960 + AT_rich Low_complexity Low_complexity 1 22 0 281 238 83 0 chr11 14519593 14519677 -136263876 + MIR SINE MIR 120 210 -52 383 340 29 29 chr11 14520012 14520218 -136263335 + MLT1K LTR MaLR 216 421 -167 702 237 41 12 chr11 14520291 14520460 -136263093 + MLT1K LTR MaLR 412 585 -3 830 310 172 18 chr11 14520628 14521309 -136262244 + L3 LINE CR1 576 1361 -216 23 0 0 0 chr11 14521696 14521719 -136261834 + AT_rich Low_complexity Low_complexity 1 23 0 708 285 158 12 chr11 14522247 14522664 -136260889 - L2 LINE L2 -9 3304 2827 1657 182 7 23 chr11 14523846 14524148 -136259405 - AluJb SINE Alu -15 297 1 806 298 14 39 chr11 14524267 14524546 -136259007 + MLT1J LTR MaLR 1 272 -239 848 216 129 14 chr11 14524596 14524883 -136258670 - MER33 DNA MER1_type 0 324 5 275 196 18 0 chr11 14524892 14524948 -136258605 + MLT1J LTR MaLR 325 381 -130 191 77 0 77 chr11 14525686 14525725 -136257828 + (T)n Simple_repeat Simple_repeat 1 36 0 563 292 50 10 chr11 14526050 14526252 -136257301 + MIR SINE MIR 15 224 -38 434 291 62 4 chr11 14526303 14526530 -136257023 - MIR SINE MIR -4 258 8 304 209 219 19 chr11 14528258 14528363 -136255190 - MIR SINE MIR -67 141 16 204 97 0 0 chr11 14530504 14530535 -136253018 + (AGCTG)n Simple_repeat Simple_repeat 3 33 0 218 298 28 35 chr11 14530821 14530962 -136252591 - MIR SINE MIR -6 256 117 995 175 134 0 chr11 14531069 14531286 -136252267 - ORSL DNA AcHobo -27 248 3 280 325 75 0 chr11 14531444 14531564 -136251989 + MIR3 SINE MIR 33 161 -47 185 244 59 67 chr11 14531962 14532081 -136251472 + L2 LINE L2 1882 1999 -1315 196 335 70 0 chr11 14532177 14532257 -136251296 - L2 LINE L2 -3 3310 3237 300 120 0 0 chr11 14532257 14532307 -136251246 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 196 335 70 0 chr11 14532307 14532418 -136251135 - L2 LINE L2 -76 3237 3117 418 282 72 72 chr11 14533008 14533432 -136250121 + L2 LINE L2 2555 3061 -211 347 141 16 0 chr11 14533487 14533551 -136250002 + CT-rich Low_complexity Low_complexity 3 67 0 835 176 0 0 chr11 14533571 14533702 -136249851 - FLAM_C SINE Alu -1 132 2 369 308 14 21 chr11 14533766 14533909 -136249644 + L2 LINE L2 3171 3312 -1 276 286 110 0 chr11 14534622 14534713 -136248840 + MER5A DNA MER1_type 2 102 -87 464 197 161 29 chr11 14539151 14539288 -136244265 - MIR SINE MIR -24 238 84 414 183 12 12 chr11 14540023 14540105 -136243448 + L2 LINE L2 3191 3272 0 654 257 10 35 chr11 14540237 14540439 -136243114 + L2 LINE L2 3113 3309 -4 242 260 0 39 chr11 14540500 14540577 -136242976 - L3 LINE CR1 -159 1418 1345 2628 193 99 0 chr11 14540621 14541128 -136242425 + MLT1F1 LTR MaLR 1 557 -10 214 307 40 40 chr11 14541194 14541295 -136242258 - L3 LINE CR1 -403 1174 1074 620 325 27 25 chr11 14541894 14542152 -136241401 + MIR SINE MIR 4 262 0 336 274 203 0 chr11 14542153 14542306 -136241247 - L3 LINE CR1 -789 788 605 241 302 38 19 chr11 14542385 14542491 -136241062 - L3 LINE CR1 -996 581 474 958 66 1 4 chr11 14542492 14542616 -136240937 + L1M4 LINE L1 5646 5767 -398 1326 60 6 0 chr11 14542616 14542780 -136240773 + L1PA5 LINE L1 5986 6153 -1 552 277 74 76 chr11 14543013 14543514 -136240039 + MLT1J LTR MaLR 1 500 -11 2771 160 2 32 chr11 14543747 14544210 -136239343 + MER70A LTR ERVL 24 472 0 221 81 0 27 chr11 14545080 14545117 -136238436 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1193 62 0 0 chr11 14545117 14545262 -136238291 - MER107 DNA MER1_type -52 145 1 1020 261 110 0 chr11 14545266 14545530 -136238023 - MER58B DNA MER1_type -48 293 1 205 410 0 0 chr11 14546082 14546182 -136237371 + L2 LINE L2 3148 3247 -25 777 267 102 39 chr11 14546247 14546580 -136236973 - MLT1L LTR MaLR -115 500 147 1096 156 0 95 chr11 14546583 14546772 -136236781 + MER20 DNA MER1_type 5 170 -49 2349 113 0 3 chr11 14546772 14547082 -136236471 + AluSc SINE Alu 1 309 0 1096 156 0 95 chr11 14547082 14547123 -136236430 + MER20 DNA MER1_type 170 213 -6 379 188 23 188 chr11 14547129 14547305 -136236248 - MLT1L LTR MaLR -461 154 8 240 328 43 0 chr11 14547566 14547682 -136235871 - MIR SINE MIR -31 231 111 489 251 62 34 chr11 14548812 14549027 -136234526 - MLT1H LTR MaLR -2 548 329 1151 177 107 69 chr11 14550468 14550843 -136232710 - MLT1E1 LTR MaLR 0 654 190 1724 179 0 7 chr11 14550843 14551134 -136232419 + AluJo SINE Alu 1 289 -23 1151 177 107 69 chr11 14551134 14551332 -136232221 - MLT1E1 LTR MaLR -464 190 1 2069 117 4 0 chr11 14551497 14551802 -136231751 - AluSq SINE Alu 0 306 1 192 40 0 0 chr11 14551806 14551831 -136231722 + (TTA)n Simple_repeat Simple_repeat 1 25 0 460 276 59 6 chr11 14551992 14552162 -136231391 - MIR SINE MIR -30 232 54 42758 59 3 4 chr11 14553726 14556665 -136226888 + L1P2 LINE L1 1 2930 -3224 2577 68 0 0 chr11 14556665 14556973 -136226580 + AluY SINE Alu 2 309 -2 42758 59 3 4 chr11 14556973 14559801 -136223752 + L1P2 LINE L1 2930 5760 -394 2594 127 3 0 chr11 14760647 14761010 -136022543 - THE1B LTR MaLR 0 364 1 628 78 0 0 chr11 14761010 14761100 -136022453 - THE1B-int LTR MaLR 0 1580 1491 356 30 15 164 chr11 14761201 14761268 -136022285 + LTR12 LTR ERV1 357 714 0 742 193 27 13 chr11 14761271 14761421 -136022132 + HERV9 LTR ERV1 2 153 -8246 * 10068 92 4 5 chr11 14761420 14762774 -136020779 + HERV9 LTR ERV1 1283 2635 -5764 390 69 0 0 chr11 14763379 14763437 -136020116 + (TA)n Simple_repeat Simple_repeat 2 59 0 1993 145 0 10 chr11 14763451 14763747 -136019806 - AluSx SINE Alu -19 293 1 2248 129 0 0 chr11 14763757 14764059 -136019494 - AluSg SINE Alu -8 302 1 1881 160 3 22 chr11 14764246 14764564 -136018989 - AluJb SINE Alu 0 312 1 377 125 14 28 chr11 14764568 14764640 -136018913 + HsTC2 DNA Tc2 1825 1895 -3 712 185 8 0 chr11 14765008 14765127 -136018426 + FLAM_A SINE Alu 2 121 -12 811 159 130 0 chr11 14765150 14765338 -136018215 + L1MC4a LINE L1 5218 5426 -744 2247 116 0 0 chr11 14765465 14765758 -136017795 + AluSg SINE Alu 1 293 -17 2436 97 0 0 chr11 14765765 14766075 -136017478 + AluSx SINE Alu 1 310 -2 1415 314 63 21 chr11 14766094 14766888 -136016665 + L1MEc LINE L1 136 962 -5434 496 191 52 43 chr11 14766889 14767004 -136016549 - MER105 DNA DNA 0 204 89 314 230 7 53 chr11 14767108 14767260 -136016293 + L1MEc LINE L1 966 1110 -5286 259 188 0 21 chr11 14767270 14767318 -136016235 + Alu SINE Alu 1 47 -254 1112 195 15 10 chr11 14767432 14767485 -136016068 + AluJb SINE Alu 85 136 -176 2091 112 14 7 chr11 14767485 14767780 -136015773 + AluSx SINE Alu 3 299 -13 1112 195 15 10 chr11 14767780 14767931 -136015622 + AluJb SINE Alu 136 290 -22 272 236 0 0 chr11 14768713 14768768 -136014785 + MLT1K LTR MaLR 532 586 -2 217 186 118 60 chr11 14769241 14769426 -136014127 + MER5C DNA MER1_type 67 320 -4 229 302 93 54 chr11 14769844 14770122 -136013431 + L2 LINE L2 2015 2303 -1011 916 98 28 28 chr11 14770656 14770799 -136012754 - AluSg/x SINE Alu -25 285 143 334 219 167 0 chr11 14770799 14770913 -136012640 - MIR SINE MIR -122 140 8 21 0 0 0 chr11 14770998 14771019 -136012534 + AT_rich Low_complexity Low_complexity 1 21 0 498 256 84 73 chr11 14771117 14771390 -136012163 + L1MC4a LINE L1 5600 5875 -1933 335 279 50 50 chr11 14771602 14771763 -136011790 + MIR3 SINE MIR 38 198 -10 508 276 114 5 chr11 14772082 14772292 -136011261 + MIR SINE MIR 17 249 -13 2147 276 121 11 chr11 14772600 14773826 -136009727 - L2 LINE L2 -3 3310 1947 635 158 117 0 chr11 14773925 14774045 -136009508 + MER94 DNA DNA 1 134 0 870 184 40 17 chr11 14774324 14774498 -136009055 + AluJo SINE Alu 1 178 -134 434 264 87 14 chr11 14774838 14775046 -136008507 + L2 LINE L2 2087 2309 -1005 782 253 67 22 chr11 14775048 14775360 -136008193 + L2 LINE L2 2452 2777 -537 201 167 0 0 chr11 14775411 14775447 -136008106 + (TTAA)n Simple_repeat Simple_repeat 2 37 0 2246 120 13 0 chr11 14775608 14775917 -136007636 - AluSq SINE Alu 0 313 1 1792 243 122 23 chr11 14777109 14777255 -136006298 - L2 LINE L2 -2 3311 3181 1740 179 6 13 chr11 14777255 14777568 -136005985 + AluJo SINE Alu 1 311 -1 1792 243 122 23 chr11 14777568 14778490 -136005063 - L2 LINE L2 -132 3181 2156 2736 175 56 67 chr11 14778635 14779405 -136004148 - L1MB8 LINE L1 -290 5888 5111 2067 144 0 3 chr11 14779405 14779703 -136003850 - AluSx SINE Alu -15 297 1 2736 175 56 67 chr11 14779703 14779760 -136003793 - L1MB8 LINE L1 -1067 5111 5055 2208 125 3 0 chr11 14779760 14780071 -136003482 - AluSx SINE Alu 0 312 1 2736 175 56 67 chr11 14780071 14780166 -136003387 - L1MB8 LINE L1 -1123 5055 4985 2195 118 0 0 chr11 14780476 14780764 -136002789 + AluSx SINE Alu 1 288 -24 1211 219 75 14 chr11 14781335 14781457 -136002096 + AluJo SINE Alu 1 114 -198 429 20 0 0 chr11 14781457 14781507 -136002046 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 1211 219 75 14 chr11 14781507 14781663 -136001890 + AluJo SINE Alu 114 296 -16 2290 99 0 0 chr11 14781666 14781971 -136001582 + AluSg SINE Alu 1 305 0 198 0 0 0 chr11 14782284 14782306 -136001247 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2096 150 0 0 chr11 14782385 14782685 -136000868 + AluJb SINE Alu 2 301 -11 26 0 0 0 chr11 14782705 14782731 -136000822 + AT_rich Low_complexity Low_complexity 1 26 0 1082 132 6 12 chr11 14782867 14783034 -136000519 + AluY SINE Alu 1 166 -145 251 188 0 16 chr11 14783870 14783934 -135999619 + (TTCA)n Simple_repeat Simple_repeat 1 63 0 531 327 41 5 chr11 14784026 14784246 -135999307 - MIR SINE MIR -15 247 20 188 251 149 59 chr11 14784508 14784763 -135998790 + L2 LINE L2 382 659 -2655 378 291 14 28 chr11 14785214 14785355 -135998198 - MER5A DNA MER1_type -34 155 17 1045 230 14 10 chr11 14785508 14785717 -135997836 + MER63A DNA MER1_type 1 210 0 2197 126 3 0 chr11 14785873 14786167 -135997386 + AluSx SINE Alu 1 295 -17 21 57 0 0 chr11 14786257 14786292 -135997261 + AT_rich Low_complexity Low_complexity 1 35 0 347 259 43 65 chr11 14786875 14787014 -135996539 - L2 LINE L2 0 3272 3137 1992 123 3 23 chr11 14787315 14787670 -135995883 + AluSq SINE Alu 1 313 0 1850 164 3 10 chr11 14787671 14787976 -135995577 + AluJo SINE Alu 1 303 -9 1964 131 13 29 chr11 14787979 14788285 -135995268 + AluSx SINE Alu 1 301 -11 207 202 36 24 chr11 14788299 14788383 -135995170 + GA-rich Low_complexity Low_complexity 5 89 0 589 249 83 76 chr11 14789769 14790046 -135993507 + MLT1L LTR MaLR 46 324 -291 652 233 109 101 chr11 14790073 14790259 -135993294 + MLT1L LTR MaLR 252 435 -180 1825 74 0 0 chr11 14790259 14790489 -135993064 - L1PA8 LINE L1 -4 6168 5939 652 233 109 101 chr11 14790489 14790502 -135993051 + MLT1L LTR MaLR 435 446 -169 2456 89 3 0 chr11 14790502 14790806 -135992747 - AluSp SINE Alu -8 305 1 652 233 109 101 chr11 14790806 14790953 -135992600 + MLT1L LTR MaLR 446 602 -13 180 0 0 0 chr11 14790965 14790985 -135992568 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1755 146 52 4 chr11 14790989 14791257 -135992296 - AluJb SINE Alu -31 281 1 180 233 75 83 chr11 14791282 14791402 -135992151 - L2 LINE L2 -97 3216 3098 689 234 0 0 chr11 14791582 14791723 -135991830 + FLAM_C SINE Alu 2 142 -1 492 276 13 39 chr11 14792580 14792736 -135990817 + LTR16C LTR ERVL 340 491 0 308 309 12 0 chr11 14792762 14792846 -135990707 + HAL1 LINE L1 237 321 -2186 2491 208 76 6 chr11 14792976 14793604 -135989949 - L1MC4 LINE L1 -6 8036 7282 290 226 9 49 chr11 14793611 14793719 -135989834 - L1MC4a LINE L1 -562 7291 7147 254 161 36 0 chr11 14793694 14793750 -135989803 - L1MC4 LINE L1 -954 7088 7031 * 312 140 0 18 chr11 14793750 14793807 -135989746 - MLT2B1 LTR ERVL -1 519 464 24 67 0 0 chr11 14793814 14793859 -135989694 + AT_rich Low_complexity Low_complexity 1 45 0 1050 171 0 0 chr11 14793913 14794083 -135989470 - AluJb SINE Alu -9 303 134 2117 132 3 0 chr11 14794083 14794379 -135989174 - AluSx SINE Alu -15 297 1 2288 104 0 10 chr11 14794387 14794694 -135988859 - AluSq SINE Alu -9 304 1 1572 181 84 36 chr11 14794701 14795085 -135988468 - MLT2B1 LTR ERVL -55 359 1 1466 173 0 12 chr11 14795085 14795328 -135988225 - L1MC4 LINE L1 -1008 7034 6795 932 148 0 39 chr11 14795334 14795526 -135988027 - AluSc SINE Alu 0 316 131 411 73 0 0 chr11 14795526 14795581 -135987972 + (TG)n Simple_repeat Simple_repeat 2 56 0 671 116 5 63 chr11 14795581 14795771 -135987782 + (TA)n Simple_repeat Simple_repeat 2 180 0 21 0 0 0 chr11 14795788 14795809 -135987744 + AT_rich Low_complexity Low_complexity 1 21 0 766 107 0 0 chr11 14795809 14795912 -135987641 - AluJb SINE Alu -187 125 23 513 216 11 224 chr11 14795920 14796108 -135987445 - L1MC4a LINE L1 -1090 6718 6678 342 62 0 21 chr11 14796108 14796156 -135987397 - MER50 LTR ERV1 -189 545 499 513 216 11 224 chr11 14796156 14796300 -135987253 - L1MC4a LINE L1 -1130 6678 6505 2531 79 0 0 chr11 14796374 14796677 -135986876 - AluY SINE Alu -8 303 1 26 0 0 0 chr11 14796813 14796839 -135986714 + AT_rich Low_complexity Low_complexity 1 26 0 2130 147 0 0 chr11 14796859 14797159 -135986394 - AluJb SINE Alu -11 301 2 261 298 177 7 chr11 14797953 14798094 -135985459 + MIR SINE MIR 47 211 -51 366 179 98 18 chr11 14798688 14798800 -135984753 + L1ME4a LINE L1 5998 6118 -3 22 35 0 0 chr11 14798800 14798829 -135984724 + AT_rich Low_complexity Low_complexity 1 29 0 377 252 62 20 chr11 14799527 14799675 -135983878 - MIR SINE MIR -65 143 38 385 202 0 24 chr11 14799726 14799810 -135983743 - Tigger5 DNA MER2_type 0 2323 2242 1583 210 32 4 chr11 14799814 14800095 -135983458 - Tigger5 DNA MER2_type -2034 289 1 1714 199 151 23 chr11 14800158 14800596 -135982957 - MLT1D LTR MaLR -9 496 3 617 213 8 0 chr11 14800602 14800762 -135982791 - FLAM_A SINE Alu 0 161 1 668 221 46 16 chr11 14801075 14801268 -135982285 - MIR SINE MIR -12 250 49 1188 269 76 8 chr11 14801802 14802199 -135981354 - LTR16A LTR ERVL -8 442 19 207 185 19 176 chr11 14802639 14802747 -135980806 - L2 LINE L2 -3 3310 3220 213 273 102 11 chr11 14803066 14803154 -135980399 + L2 LINE L2 3160 3255 -17 227 323 50 0 chr11 14803155 14803254 -135980299 - MIR SINE MIR -122 140 37 471 82 0 0 chr11 14803370 14803443 -135980110 + (TG)n Simple_repeat Simple_repeat 2 74 0 254 194 15 0 chr11 14804182 14804249 -135979304 + CT-rich Low_complexity Low_complexity 1 68 0 1853 137 0 78 chr11 14804259 14804566 -135978987 - AluJo SINE Alu -29 283 1 2377 106 0 0 chr11 14804575 14804886 -135978667 - AluY SINE Alu 0 311 1 216 86 0 0 chr11 14805426 14805461 -135978092 + (TG)n Simple_repeat Simple_repeat 1 35 0 558 253 71 50 chr11 14805588 14805869 -135977684 + L2 LINE L2 3027 3313 0 374 306 112 16 chr11 14806046 14806304 -135977249 + L2 LINE L2 1575 1857 -1457 521 240 87 10 chr11 14806433 14806641 -135976912 + L2 LINE L2 2086 2309 -1005 823 244 67 22 chr11 14806643 14806955 -135976598 + L2 LINE L2 2452 2777 -537 201 167 0 0 chr11 14807006 14807042 -135976511 + (TTAA)n Simple_repeat Simple_repeat 4 39 0 2110 137 13 0 chr11 14807206 14807512 -135976041 - AluSq SINE Alu -3 310 1 1924 116 4 14 chr11 14807670 14807946 -135975607 - AluSq SINE Alu -40 273 1 1804 172 7 3 chr11 14808194 14808502 -135975051 - AluJo SINE Alu -3 309 1 1318 239 74 29 chr11 14809233 14809680 -135973873 + MLT1C LTR MaLR 1 467 0 2240 94 23 0 chr11 14810465 14810764 -135972789 - AluSx SINE Alu -6 306 1 3270 157 47 5 chr11 14810900 14811518 -135972035 + L1MC3 LINE L1 6126 6333 -11 1680 191 3 10 chr11 14812239 14812527 -135971026 + AluJo SINE Alu 1 286 -26 204 242 95 63 chr11 14812637 14812732 -135970821 - L2 LINE L2 -56 3257 3160 246 221 12 58 chr11 14812752 14812838 -135970715 - HsTC2 DNA Tc2 -1814 84 3 2418 91 0 0 chr11 14813079 14813376 -135970177 + AluSq SINE Alu 1 297 -16 749 247 0 0 chr11 14813566 14813728 -135969825 + FRAM SINE Alu 1 162 -4 1951 139 0 14 chr11 14813998 14814313 -135969240 + AluSx SINE Alu 1 311 0 727 224 139 15 chr11 14814694 14814895 -135968658 - MIR SINE MIR -23 239 14 2848 16 0 0 chr11 14815127 14815439 -135968114 - AluYb8 SINE Alu -6 312 1 2280 88 7 0 chr11 14816680 14816974 -135966579 + AluSx SINE Alu 1 296 -16 184 319 150 12 chr11 14817768 14817928 -135965625 - L2 LINE L2 -19 3294 3113 1807 153 3 41 chr11 14817932 14818246 -135965307 + AluJb SINE Alu 2 303 -9 746 236 44 93 chr11 14818842 14818947 -135964606 + L1ME1 LINE L1 3342 3451 -2695 1735 178 0 36 chr11 14818947 14819250 -135964303 + AluJb SINE Alu 1 292 -20 746 236 44 93 chr11 14819250 14819715 -135963838 + L1ME1 LINE L1 3451 3884 -2262 294 262 166 7 chr11 14819769 14819914 -135963639 + L1ME1 LINE L1 4012 4179 -1967 430 279 126 49 chr11 14820046 14820394 -135963159 + L1ME1 LINE L1 4315 4689 -1457 398 215 93 19 chr11 14820401 14820508 -135963045 + L2 LINE L2 3195 3309 -4 445 258 70 48 chr11 14820556 14820742 -135962811 + L1ME1 LINE L1 4767 4956 -1190 253 306 97 37 chr11 14820938 14821072 -135962481 + MIR SINE MIR 40 181 -81 2282 52 42 0 chr11 14821093 14821381 -135962172 - AluY SINE Alu -11 300 1 22 0 0 0 chr11 14822167 14822189 -135961364 + AT_rich Low_complexity Low_complexity 1 22 0 2754 13 0 3 chr11 14822561 14822868 -135960685 + AluYa5 SINE Alu 1 306 -5 428 209 19 0 chr11 14823995 14824100 -135959453 + (CATATA)n Simple_repeat Simple_repeat 2 108 0 2096 119 3 14 chr11 14824102 14824396 -135959157 - AluSq SINE Alu -22 291 1 471 213 97 14 chr11 14824415 14824588 -135958965 + MER69 DNA AcHobo 1 2520 -6 27 0 0 0 chr11 14824699 14824726 -135958827 + AT_rich Low_complexity Low_complexity 1 27 0 1628 202 0 28 chr11 14824770 14825087 -135958466 + AluJo SINE Alu 1 308 -4 1265 136 17 15 chr11 14825272 14825507 -135958046 + AluJb SINE Alu 1 297 -15 763 219 30 0 chr11 14825894 14826063 -135957490 - FRAM SINE Alu -2 174 1 789 153 15 8 chr11 14826541 14826672 -135956881 + FLAM_A SINE Alu 2 133 0 1900 214 75 11 chr11 14826733 14827335 -135956218 + L1ME1 LINE L1 5192 5830 -334 1078 123 0 7 chr11 14827335 14827489 -135956064 + AluJb SINE Alu 135 287 -25 481 194 15 23 chr11 14827499 14827755 -135955798 + L1ME1 LINE L1 5811 6103 -63 359 308 176 33 chr11 14828076 14828378 -135955175 - L1ME4a LINE L1 -237 5884 5540 305 246 36 0 chr11 14828416 14828526 -135955027 - L1ME4a LINE L1 -12 6109 5996 1499 146 73 11 chr11 14828637 14828912 -135954641 - AluJb SINE Alu -20 292 1 326 294 81 38 chr11 14829146 14829306 -135954247 - L1ME4a LINE L1 -570 5551 5385 282 56 0 0 chr11 14829507 14829543 -135954010 + (CA)n Simple_repeat Simple_repeat 1 36 0 253 296 194 35 chr11 14829729 14830418 -135953135 + L2 LINE L2 1562 2360 -954 4852 205 149 17 chr11 14830585 14832074 -135951479 + L1MDa LINE L1 19 1983 -4557 3147 146 91 54 chr11 14832074 14832754 -135950799 + MER44D DNA MER2_type 1 705 0 4852 205 149 17 chr11 14832754 14833197 -135950356 + L1MDa LINE L1 1983 2366 -4174 506 209 98 52 chr11 14833198 14833290 -135950263 - MIR SINE MIR -89 173 70 1708 159 31 25 chr11 14833290 14833649 -135949904 - MER46B DNA MER2_type 0 236 1 506 209 98 52 chr11 14833649 14833709 -135949844 - MIR SINE MIR -192 70 14 1757 193 79 23 chr11 14833887 14834142 -135949411 + LTR54 LTR ERV1 1 240 -270 796 129 15 23 chr11 14834142 14834274 -135949279 + FLAM_C SINE Alu 3 133 0 1757 193 79 23 chr11 14834274 14834501 -135949052 + LTR54 LTR ERV1 240 510 0 275 206 254 8 chr11 14834501 14834626 -135948927 + Charlie4 DNA MER1_type 90 245 -1716 23 68 0 0 chr11 14834679 14834723 -135948830 + AT_rich Low_complexity Low_complexity 1 44 0 329 193 11 0 chr11 14834725 14834813 -135948740 + Charlie4 DNA MER1_type 1803 1891 -70 658 137 0 0 chr11 14834813 14834915 -135948638 + AluJ/FLAM SINE Alu 1 102 -210 1088 195 35 10 chr11 14835023 14835414 -135948139 - L1M3 LINE L1 -641 5539 5139 1714 168 42 3 chr11 14835440 14835726 -135947827 - AluJo SINE Alu -15 297 1 2320 90 0 0 chr11 14836142 14836441 -135947112 + AluSx SINE Alu 1 299 -13 190 254 17 51 chr11 14836624 14836683 -135946870 + MER5A DNA MER1_type 47 103 -86 629 211 133 6 chr11 14837337 14837503 -135946050 - MER5A DNA MER1_type -1 188 2 583 270 91 123 chr11 14837559 14837609 -135945944 - MLT1K LTR MaLR -6 582 532 1563 144 0 0 chr11 14837609 14837845 -135945708 + MER46A DNA MER2_type 1 236 0 583 270 91 123 chr11 14837845 14838042 -135945511 - MLT1K LTR MaLR -56 532 330 801 183 146 0 chr11 14838042 14838206 -135945347 - MER5A DNA MER1_type 0 189 2 583 270 91 123 chr11 14838206 14838549 -135945004 - MLT1K LTR MaLR -258 330 10 245 332 54 46 chr11 14838643 14838848 -135944705 + MIR SINE MIR 3 212 -50 2120 137 0 0 chr11 14838880 14839173 -135944380 - AluSx SINE Alu -19 293 1 578 243 143 68 chr11 14839410 14839780 -135943773 + LTR16C LTR ERVL 94 491 0 1060 250 62 19 chr11 14839799 14840167 -135943386 + L1MC4a LINE L1 5579 5962 -1846 1354 90 37 0 chr11 14840214 14840402 -135943151 - AluSq SINE Alu -5 308 114 2493 81 0 0 chr11 14840475 14840783 -135942770 - AluY SINE Alu -3 308 1 339 198 167 10 chr11 14841196 14841292 -135942261 - MIR SINE MIR -65 143 33 335 191 0 0 chr11 14841641 14841704 -135941849 + L2 LINE L2 3210 3272 0 389 268 309 6 chr11 14842038 14842206 -135941347 + MIR SINE MIR 32 250 -12 283 205 0 72 chr11 14842792 14842875 -135940678 + (TCTCTG)n Simple_repeat Simple_repeat 4 80 0 497 108 0 137 chr11 14843285 14843368 -135940185 + FLAM_A SINE Alu 40 108 -203 2492 80 0 0 chr11 14843368 14843668 -135939885 - AluSq SINE Alu -13 300 1 497 108 0 137 chr11 14843668 14843686 -135939867 + FLAM_A SINE Alu 108 127 -184 27 0 0 0 chr11 14843744 14843771 -135939782 + AT_rich Low_complexity Low_complexity 1 27 0 346 237 23 30 chr11 14843942 14844073 -135939480 + L1MC/D LINE L1 5527 5656 -465 241 265 0 2 chr11 14844903 14844962 -135938591 + MLT1J1 LTR MaLR 71 123 -323 246 192 0 0 chr11 14845276 14845328 -135938225 + (TA)n Simple_repeat Simple_repeat 2 53 0 195 42 0 0 chr11 14845328 14845352 -135938201 + (GA)n Simple_repeat Simple_repeat 2 25 0 316 239 45 23 chr11 14845384 14845472 -135938081 + L1MC/D LINE L1 5724 5813 -308 1868 150 25 0 chr11 14845899 14846185 -135937368 + AluJo SINE Alu 1 293 -19 898 149 0 22 chr11 14846202 14846336 -135937217 + AluJo SINE Alu 6 136 -176 2271 95 0 0 chr11 14846336 14846649 -135936904 + AluSx SINE Alu 1 313 0 327 134 0 85 chr11 14846652 14846734 -135936819 + AluJ/FRAM SINE Alu 228 302 0 613 281 13 47 chr11 14847272 14847509 -135936044 + L1ME4a LINE L1 5593 5819 -302 2186 119 0 0 chr11 14847509 14847811 -135935742 + AluSx SINE Alu 1 302 -10 613 281 13 47 chr11 14847811 14847872 -135935681 + L1ME4a LINE L1 5819 5881 -240 24 0 0 0 chr11 14848150 14848174 -135935379 + AT_rich Low_complexity Low_complexity 1 24 0 310 291 145 45 chr11 14848920 14849099 -135934454 + MIR SINE MIR 35 231 -31 333 240 0 10 chr11 14849491 14849587 -135933966 + MER113 DNA MER1_type? 6 100 -421 1882 117 78 33 chr11 14849747 14850106 -135933447 - THE1C LTR MaLR 0 375 1 270 255 94 73 chr11 14850203 14850395 -135933158 - MIR3 SINE MIR -10 198 3 229 250 19 0 chr11 14850908 14850960 -135932593 + MER91 DNA MER1_type 135 187 -3 404 207 135 9 chr11 14851285 14851396 -135932157 + MIR3 SINE MIR 11 135 -73 2240 112 0 0 chr11 14851440 14851736 -135931817 + AluSx SINE Alu 1 296 -16 203 228 88 0 chr11 14851878 14851935 -135931618 - MIR SINE MIR -108 100 39 637 296 109 39 chr11 14852135 14852354 -135931199 - L2 LINE L2 -627 2687 2436 2437 141 23 28 chr11 14852354 14852781 -135930772 + MER61B LTR ERV1 1 425 0 637 296 109 39 chr11 14852781 14852892 -135930661 - L2 LINE L2 -878 2436 2334 422 326 39 33 chr11 14853069 14853250 -135930303 + MIR SINE MIR 5 186 -76 2196 129 19 16 chr11 14853348 14853712 -135929841 + MLT1A1 LTR MaLR 1 365 0 550 271 169 4 chr11 14853777 14854002 -135929551 + MIR SINE MIR 1 262 0 197 311 0 0 chr11 14854011 14854056 -135929497 + L2 LINE L2 3217 3261 -11 756 293 87 14 chr11 14854776 14855145 -135928408 - MLT1L LTR MaLR 0 615 220 204 290 58 14 chr11 14855193 14855262 -135928291 - L2 LINE L2 -534 2780 2709 691 192 15 8 chr11 14855274 14855404 -135928149 - FLAM_C SINE Alu -12 131 1 676 304 283 19 chr11 14855406 14856248 -135927305 - L2 LINE L2 -601 2713 1650 2197 114 3 0 chr11 14856719 14857009 -135926544 - AluSx SINE Alu -19 293 3 284 320 0 0 chr11 14859081 14859156 -135924397 + L3 LINE CR1 1501 1575 -2 302 293 95 17 chr11 14859234 14859350 -135924203 + MIR SINE MIR 64 188 -74 775 161 13 13 chr11 14859575 14859730 -135923823 - L1MB3 LINE L1 -13 6170 6016 2339 94 7 3 chr11 14859892 14860199 -135923354 + AluSg SINE Alu 3 310 0 743 274 25 59 chr11 14860530 14860767 -135922786 + MIR SINE MIR 1 228 -34 23 0 0 0 chr11 14860874 14860897 -135922656 + AT_rich Low_complexity Low_complexity 1 23 0 323 275 76 55 chr11 14861470 14861706 -135921847 - L2 LINE L2 -203 3069 2829 4962 241 78 61 chr11 14862194 14863296 -135920257 - L1MDa LINE L1 -1809 4406 3324 841 158 0 34 chr11 14863296 14863442 -135920111 - FLAM_C SINE Alu -2 141 1 4962 241 78 61 chr11 14863442 14864711 -135918842 - L1MDa LINE L1 -2891 3324 2078 781 199 0 0 chr11 14864711 14864842 -135918711 + FLAM_A SINE Alu 1 131 -2 4962 241 78 61 chr11 14864842 14866037 -135917516 - L1MDa LINE L1 -4137 2078 469 2339 115 0 0 chr11 14867033 14867345 -135916208 + AluSx SINE Alu 1 312 0 1684 193 7 10 chr11 14867417 14867722 -135915831 - AluJb SINE Alu -8 304 1 215 244 154 0 chr11 14868376 14868454 -135915099 - L2 LINE L2 0 3313 3224 212 260 233 0 chr11 14869088 14869161 -135914392 + L2 LINE L2 3223 3312 -1 2089 106 7 23 chr11 14869612 14869914 -135913639 + AluSg SINE Alu 1 297 -13 1447 260 219 20 chr11 14870013 14870798 -135912755 - L2 LINE L2 -1177 2137 1197 2203 115 49 14 chr11 14871254 14871603 -135911950 - MER46B DNA MER2_type 0 236 1 2421 74 0 3 chr11 14872268 14872564 -135910989 + AluY SINE Alu 1 295 -16 342 0 0 0 chr11 14872567 14872605 -135910948 + (TA)n Simple_repeat Simple_repeat 2 39 0 2166 105 76 15 chr11 14872888 14873231 -135910322 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr11 14873386 14873408 -135910145 + AT_rich Low_complexity Low_complexity 1 22 0 1614 170 16 35 chr11 14875334 14875646 -135907907 + AluJo SINE Alu 1 306 -6 24 0 0 0 chr11 14875649 14875673 -135907880 + AT_rich Low_complexity Low_complexity 1 24 0 816 168 0 15 chr11 14876355 14876486 -135907067 + AluJb SINE Alu 167 295 -17 1566 182 46 14 chr11 14876935 14877215 -135906338 + AluJo SINE Alu 1 289 -23 24 0 0 0 chr11 14877215 14877239 -135906314 + AT_rich Low_complexity Low_complexity 1 24 0 323 277 103 0 chr11 14878418 14878561 -135904992 + MIR SINE MIR 49 210 -52 514 214 32 40 chr11 14878769 14878895 -135904658 + L1ME3 LINE L1 6028 6152 -10 1195 107 66 66 chr11 14879826 14880022 -135903531 + AluJb SINE Alu 87 282 -30 185 215 87 81 chr11 14880856 14881005 -135902548 + L2 LINE L2 3077 3226 -87 2221 101 7 19 chr11 14881139 14881447 -135902106 + AluSx SINE Alu 1 304 -8 402 21 0 0 chr11 14881507 14881554 -135901999 + (CA)n Simple_repeat Simple_repeat 1 47 0 278 237 35 61 chr11 14881848 14881962 -135901591 + MIR SINE MIR 21 131 -131 431 322 36 30 chr11 14882255 14882491 -135901062 + MIR SINE MIR 9 249 -13 676 194 0 8 chr11 14882898 14883022 -135900531 + FLAM_C SINE Alu 2 124 -19 1009 231 64 16 chr11 14884726 14885037 -135898516 - L2 LINE L2 -1111 2203 1878 257 302 161 13 chr11 14885600 14885749 -135897804 + MIR SINE MIR 13 183 -79 246 294 149 72 chr11 14886079 14886314 -135897239 + MIR SINE MIR 10 262 0 619 280 60 36 chr11 14887413 14887586 -135895967 - MIR SINE MIR 0 262 80 2077 135 3 0 chr11 14887586 14887883 -135895670 + AluJb SINE Alu 1 298 -14 619 280 60 36 chr11 14887883 14887959 -135895594 - MIR SINE MIR -182 80 7 370 314 99 17 chr11 14887960 14888270 -135895283 + L1ME LINE L1 5445 5725 -396 267 114 0 0 chr11 14888695 14888730 -135894823 - U2 snRNA snRNA -153 35 1 423 0 0 0 chr11 14888732 14888779 -135894774 + (TG)n Simple_repeat Simple_repeat 2 48 0 2234 115 3 0 chr11 14892381 14892677 -135890876 + AluSc SINE Alu 1 297 -12 1238 180 5 9 chr11 14892691 14892908 -135890645 + AluJb SINE Alu 85 300 -12 328 191 96 0 chr11 14894437 14894531 -135889022 - MIR SINE MIR -49 213 111 252 316 101 74 chr11 14894835 14895161 -135888392 - L2 LINE L2 -49 3223 2889 1662 160 44 7 chr11 14895268 14895543 -135888010 + AluJo SINE Alu 1 285 -27 1314 289 121 35 chr11 14895548 14896538 -135887015 - L2 LINE L2 -556 2758 1684 259 275 108 24 chr11 14897918 14898085 -135885468 - MIR SINE MIR -34 228 48 22 35 0 0 chr11 14898952 14898981 -135884572 + AT_rich Low_complexity Low_complexity 1 29 0 323 367 59 34 chr11 14899055 14899292 -135884261 - L2 LINE L2 -2 3270 3028 317 239 174 0 chr11 14900132 14900241 -135883312 - MIR SINE MIR -70 192 65 236 280 54 21 chr11 14900853 14900946 -135882607 - L2 LINE L2 -181 3091 2996 905 183 46 0 chr11 14900953 14901128 -135882425 - MER5A DNA MER1_type -6 183 1 472 263 23 69 chr11 14901466 14901683 -135881870 - MIR SINE MIR -35 227 21 233 317 141 7 chr11 14901842 14901984 -135881569 + MIR SINE MIR 38 198 -64 790 177 0 0 chr11 14902316 14902446 -135881107 + FRAM SINE Alu 40 169 -7 803 289 18 0 chr11 14903263 14903481 -135880072 + MER58A DNA MER1_type 1 222 -2 2273 125 0 0 chr11 14904107 14904412 -135879141 + AluSq SINE Alu 1 305 -8 337 250 12 12 chr11 14904491 14904575 -135878978 + MER117 DNA MER1_type 114 197 0 424 335 45 0 chr11 14904854 14905009 -135878544 + L1ME LINE L1 5533 5694 -427 748 216 126 0 chr11 14905251 14905450 -135878103 + MIR SINE MIR 26 249 -13 327 227 118 18 chr11 14909570 14909680 -135873873 + MIR SINE MIR 77 197 -65 251 246 43 0 chr11 14909965 14910034 -135873519 - MIR SINE MIR -70 192 121 283 234 64 74 chr11 14910620 14910794 -135872759 + MIR SINE MIR 19 192 -66 189 0 0 0 chr11 14911196 14911217 -135872336 + (A)n Simple_repeat Simple_repeat 1 21 0 251 305 120 55 chr11 14911767 14911889 -135871664 - L2 LINE L2 -181 3091 2978 2339 101 0 7 chr11 14911889 14912197 -135871356 + AluSq SINE Alu 1 306 -7 251 305 120 55 chr11 14912197 14912441 -135871112 - L2 LINE L2 -294 2978 2704 235 191 21 0 chr11 14912753 14912800 -135870753 - L2 LINE L2 -2 3311 3264 180 312 91 13 chr11 14912935 14913012 -135870541 - L2 LINE L2 -199 3073 2991 813 257 209 23 chr11 14913089 14913495 -135870058 - MLT1H LTR MaLR -13 536 12 199 244 0 0 chr11 14914069 14914110 -135869443 - L3 LINE CR1 -204 1373 1333 21 0 0 0 chr11 14914464 14914485 -135869068 + AT_rich Low_complexity Low_complexity 1 21 0 2340 122 87 44 chr11 14916408 14916844 -135866709 + MSTB2 LTR MaLR 1 455 -2 2298 89 0 3 chr11 14916937 14917229 -135866324 - AluSp SINE Alu -21 292 2 183 42 0 0 chr11 14918846 14918870 -135864683 + (TAAAAA)n Simple_repeat Simple_repeat 3 26 0 371 302 31 0 chr11 14919559 14919655 -135863898 + MIR SINE MIR 54 152 -110 21 36 0 0 chr11 14920518 14920546 -135863007 + AT_rich Low_complexity Low_complexity 1 28 0 1692 140 0 34 chr11 14920798 14921132 -135862421 + AluJb SINE Alu 1 324 0 1750 123 36 18 chr11 14921136 14921413 -135862140 + AluJb SINE Alu 22 303 -9 2186 116 13 0 chr11 14922240 14922542 -135861011 - AluSx SINE Alu -6 306 1 1056 166 52 0 chr11 14923916 14924127 -135859426 + L1MA8 LINE L1 6070 6291 0 1680 178 0 27 chr11 14924129 14924427 -135859126 + AluJo SINE Alu 1 290 -22 24 0 0 0 chr11 14924430 14924454 -135859099 + AT_rich Low_complexity Low_complexity 1 24 0 1494 161 18 25 chr11 14924804 14925083 -135858470 + AluJo SINE Alu 11 287 -25 22 56 0 0 chr11 14925083 14925119 -135858434 + AT_rich Low_complexity Low_complexity 1 36 0 3795 194 89 109 chr11 14925496 14926217 -135857336 - L1MC4a LINE L1 -505 7303 6569 1502 66 0 0 chr11 14926217 14926400 -135857153 - AluY SINE Alu -7 304 122 2188 98 3 35 chr11 14926402 14926718 -135856835 - AluY SINE Alu -5 306 1 3795 194 89 109 chr11 14926718 14927453 -135856100 - L1MC4a LINE L1 -1240 6568 5873 2480 121 28 15 chr11 14927460 14927856 -135855697 + MSTB1 LTR MaLR 7 407 -25 1179 171 69 9 chr11 14927859 14928076 -135855477 + MER30 DNA MER1_type 1 230 0 590 228 232 13 chr11 14928105 14928329 -135855224 - L1MC4a LINE L1 -1937 5871 5599 1162 201 124 35 chr11 14928362 14928700 -135854853 + L1MC4 LINE L1 7445 7812 -230 2306 96 0 10 chr11 14928701 14929002 -135854551 + AluSq SINE Alu 1 298 -15 1371 82 0 0 chr11 14929002 14929172 -135854381 + AluSg/x SINE Alu 134 303 -9 689 176 85 7 chr11 14929179 14929332 -135854221 + L1MC4 LINE L1 7809 7973 -69 23 0 0 0 chr11 14929584 14929607 -135853946 + AT_rich Low_complexity Low_complexity 1 23 0 366 23 0 0 chr11 14930013 14930056 -135853497 + (GA)n Simple_repeat Simple_repeat 2 44 0 2122 108 3 14 chr11 14930058 14930355 -135853198 - AluSx SINE Alu -18 294 1 1651 110 15 46 chr11 14930603 14930866 -135852687 + AluSq SINE Alu 44 298 -15 205 179 0 0 chr11 14930912 14930951 -135852602 + (CA)n Simple_repeat Simple_repeat 2 40 0 2394 104 0 3 chr11 14931925 14932233 -135851320 - AluSx SINE Alu -5 307 1 453 257 62 45 chr11 14932233 14932412 -135851141 - MIR SINE MIR -10 252 71 864 193 57 28 chr11 14933237 14933449 -135850104 - MIR SINE MIR -10 252 35 419 243 36 77 chr11 14933762 14933920 -135849633 - MIR SINE MIR -40 168 14 2262 70 49 0 chr11 14934058 14934342 -135849211 - AluSg SINE Alu -12 298 1 309 243 104 131 chr11 14935856 14936193 -135847360 + L1M2 LINE L1 773 1100 -5749 * 384 230 59 166 chr11 14936156 14936548 -135847005 - L1M2 LINE L1 -5934 915 566 647 99 0 0 chr11 14937048 14937129 -135846424 - AluJ/FLAM SINE Alu -230 82 2 198 231 205 26 chr11 14937129 14937207 -135846346 + MIR SINE MIR 163 254 -8 740 239 85 11 chr11 14937234 14937422 -135846131 + MLT1H1 LTR MaLR 91 292 -263 524 236 66 22 chr11 14937465 14937648 -135845905 + MLT1F LTR MaLR 269 450 -92 1432 168 98 7 chr11 14937660 14937896 -135845657 - AluJo SINE Alu -13 299 33 1763 148 31 3 chr11 14937896 14938187 -135845366 + AluSx SINE Alu 1 299 -13 1432 168 98 7 chr11 14938187 14938224 -135845329 - AluJo SINE Alu -279 33 1 1616 106 38 72 chr11 14938271 14938564 -135844989 + AluSx SINE Alu 12 294 -18 247 162 0 0 chr11 14938565 14938602 -135844951 - Alu SINE Alu -271 37 1 835 172 0 6 chr11 14938646 14938790 -135844763 + AluSg/x SINE Alu 142 286 -24 3809 174 56 10 chr11 14938790 14939501 -135844052 + L1MB7 LINE L1 5428 6171 -13 835 172 0 6 chr11 14939501 14939513 -135844040 + AluSg/x SINE Alu 286 297 -13 438 183 201 43 chr11 14939892 14940056 -135843497 - MIR3 SINE MIR -15 193 4 743 276 44 56 chr11 14940216 14940535 -135843018 + MER102b DNA MER1_type 26 340 -1 22 0 0 0 chr11 14940585 14940607 -135842946 + AT_rich Low_complexity Low_complexity 1 22 0 287 264 25 15 chr11 14940616 14940720 -135842833 + MER5A DNA MER1_type 24 138 -51 2332 90 0 7 chr11 14940743 14941043 -135842510 + AluSx SINE Alu 1 298 -14 2367 90 3 0 chr11 14941045 14941345 -135842208 + AluSp SINE Alu 1 301 -12 376 319 37 6 chr11 14941914 14942077 -135841476 - MIR3 SINE MIR -7 201 34 2188 127 0 0 chr11 14942212 14942512 -135841041 - AluSx SINE Alu -12 300 1 375 233 196 0 chr11 14942512 14942645 -135840908 + L1ME4a LINE L1 5699 5857 -264 1461 198 73 40 chr11 14942656 14942783 -135840770 + MLT1A1 LTR MaLR 1 122 -243 3479 60 0 79 chr11 14942783 14943263 -135840290 - MLT2A1 LTR ERVL -2 442 1 1461 198 73 40 chr11 14943263 14943464 -135840089 + MLT1A1 LTR MaLR 122 340 -25 2469 90 3 0 chr11 14943502 14943814 -135839739 + AluSp SINE Alu 1 313 0 353 214 128 132 chr11 14943885 14943951 -135839602 - MIR SINE MIR -12 250 185 2405 94 0 0 chr11 14943951 14944250 -135839303 + AluY SINE Alu 1 299 -12 353 214 128 132 chr11 14944250 14944426 -135839127 - MIR SINE MIR -77 185 9 3373 187 31 5 chr11 14944532 14945174 -135838379 - L1MB5 LINE L1 -154 6020 5362 1281 301 103 38 chr11 14995209 14995316 -135788237 + L2 LINE L2 1988 2087 -1227 1382 201 37 0 chr11 14995316 14995615 -135787938 - L1MA6 LINE L1 0 6300 5991 1281 301 103 38 chr11 14995615 14996292 -135787261 + L2 LINE L2 2087 2823 -491 2298 68 0 17 chr11 14996394 14996688 -135786865 - AluY SINE Alu -22 289 1 35 24 0 0 chr11 14997386 14997428 -135786125 + AT_rich Low_complexity Low_complexity 1 42 0 1917 168 0 3 chr11 14997484 14997782 -135785771 - AluSx SINE Alu -15 297 1 2457 81 0 0 chr11 14997988 14998285 -135785268 + AluSx SINE Alu 1 297 -15 936 117 4 19 chr11 14998332 14998579 -135784974 + AluSx SINE Alu 2 301 -11 885 127 0 15 chr11 14999248 14999382 -135784171 - FLAM_C SINE Alu 0 133 2 3289 60 22 44 chr11 14999494 14999706 -135783847 + MLT2A1 LTR ERVL 1 216 -228 2297 103 0 7 chr11 14999706 15000008 -135783545 + AluSq SINE Alu 1 300 -13 3289 60 22 44 chr11 15000008 15000249 -135783304 + MLT2A1 LTR ERVL 216 444 0 2140 106 7 0 chr11 15000684 15001007 -135782546 + AluSp SINE Alu 1 325 0 200 250 83 0 chr11 15001270 15001342 -135782211 - MIR SINE MIR -71 191 114 395 296 76 22 chr11 15001378 15001601 -135781952 + MIR SINE MIR 25 259 -3 1727 151 4 0 chr11 15002128 15002386 -135781167 - AluJb SINE Alu -9 303 45 274 284 37 18 chr11 15002486 15002595 -135780958 - HAL1 LINE L1 -707 1800 1690 236 339 39 44 chr11 15002587 15002751 -135780802 - HAL1 LINE L1 -573 1934 1770 * 198 0 0 0 chr11 15002751 15002773 -135780780 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 236 339 39 44 chr11 15002773 15002788 -135780765 - HAL1 LINE L1 -737 1770 1756 791 226 65 0 chr11 15002809 15003008 -135780545 - HAL1 LINE L1 -866 1641 1430 1627 149 50 8 chr11 15003008 15003307 -135780246 - AluJo SINE Alu 0 328 19 258 214 0 136 chr11 15003338 15003441 -135780112 - HAL1 LINE L1 -1066 1441 1353 2426 98 0 0 chr11 15003711 15004016 -135779537 - AluSx SINE Alu -7 305 1 236 282 114 30 chr11 15004403 15004534 -135779019 + L2 LINE L2 2611 2752 -562 665 312 18 113 chr11 15004634 15004871 -135778682 + L2 LINE L2 2915 3102 -170 2654 125 18 66 chr11 15004871 15005093 -135778460 + Tigger2a DNA MER2_type 2 192 -2516 2233 129 0 6 chr11 15005093 15005404 -135778149 - AluSx SINE Alu -3 309 1 2654 125 18 66 chr11 15005404 15005636 -135777917 + Tigger2a DNA MER2_type 192 434 0 665 312 18 113 chr11 15005636 15005789 -135777764 + L2 LINE L2 3102 3268 -4 2241 94 13 3 chr11 15006026 15006324 -135777229 - AluSq SINE Alu -12 301 1 207 0 0 0 chr11 15006835 15006858 -135776695 + (A)n Simple_repeat Simple_repeat 1 23 0 303 326 133 39 chr11 15006995 15007455 -135776098 - L2 LINE L2 -2281 1033 531 2352 82 0 7 chr11 15007698 15007991 -135775562 + AluSx SINE Alu 3 293 -19 386 268 146 18 chr11 15008171 15008335 -135775218 + MIR SINE MIR 21 205 -57 231 199 0 15 chr11 15009346 15009410 -135774143 - MIR SINE MIR -65 143 89 218 200 20 0 chr11 15009724 15009774 -135773779 + MIR SINE MIR 73 123 -139 1666 106 160 4 chr11 15009788 15010044 -135773509 + AluSx SINE Alu 1 296 -16 1988 150 7 0 chr11 15010297 15010591 -135772962 + AluSx SINE Alu 2 297 -15 305 282 77 0 chr11 15011054 15011171 -135772382 + L2 LINE L2 3168 3293 -20 454 274 134 26 chr11 15011753 15011961 -135771592 - MIR SINE MIR -30 232 3 407 218 0 0 chr11 15012087 15012165 -135771388 + MER116 DNA Mariner 1 78 -2 1826 125 63 21 chr11 15012461 15012748 -135770805 - AluJo SINE Alu -13 299 1 1601 177 7 45 chr11 15012846 15013156 -135770397 + AluJo SINE Alu 1 298 -14 217 318 59 12 chr11 15013356 15013441 -135770112 + L2 LINE L2 3007 3095 -177 2249 79 3 30 chr11 15014804 15015107 -135768446 - AluSx SINE Alu -17 295 1 279 266 0 51 chr11 15015244 15015323 -135768230 - L2 LINE L2 0 3313 3239 21 36 0 0 chr11 15015368 15015396 -135768157 + AT_rich Low_complexity Low_complexity 1 28 0 378 307 218 14 chr11 15015549 15015842 -135767711 - L2 LINE L2 -688 2626 2274 1491 85 10 10 chr11 15015948 15016147 -135767406 + AluSc SINE Alu 97 295 -14 763 160 24 0 chr11 15016187 15016312 -135767241 - FLAM_C SINE Alu -3 130 3 1330 181 79 29 chr11 15016329 15016606 -135766947 - AluJo SINE Alu -21 291 1 234 0 0 0 chr11 15016658 15016684 -135766869 + (A)n Simple_repeat Simple_repeat 1 26 0 512 231 116 0 chr11 15017291 15017438 -135766115 + MER103 DNA DNA 3 166 0 186 43 0 0 chr11 15017675 15017698 -135765855 + (T)n Simple_repeat Simple_repeat 1 23 0 2470 64 0 0 chr11 15018455 15018751 -135764802 + AluY SINE Alu 1 296 -15 22 35 0 0 chr11 15018946 15018975 -135764578 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr11 15019006 15019049 -135764504 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr11 15019386 15019415 -135764138 + AT_rich Low_complexity Low_complexity 1 29 0 1314 109 0 6 chr11 15019569 15019744 -135763809 - AluSg/x SINE Alu -7 305 132 2326 82 7 20 chr11 15020258 15020562 -135762991 - AluSx SINE Alu -12 300 1 427 177 91 0 chr11 15020602 15020703 -135762850 + L1ME1 LINE L1 6065 6182 -2 200 343 19 19 chr11 15020706 15020811 -135762742 + L2 LINE L2 3126 3230 -83 25 65 0 0 chr11 15020873 15020919 -135762634 + AT_rich Low_complexity Low_complexity 1 46 0 2109 138 0 3 chr11 15021112 15021410 -135762143 - AluSx SINE Alu -14 298 2 1852 138 50 0 chr11 15022015 15022298 -135761255 - AluJb SINE Alu -15 297 1 782 263 52 0 chr11 15022932 15023126 -135760427 - MIR SINE MIR -14 248 45 2140 135 15 9 chr11 15023300 15023640 -135759913 + MER2 DNA MER2_type 2 343 -1 2292 107 0 3 chr11 15023718 15024026 -135759527 - AluSg SINE Alu -3 307 1 413 349 198 31 chr11 15024064 15024803 -135758750 + L2 LINE L2 1397 2011 -1303 2122 129 3 10 chr11 15024803 15025114 -135758439 - AluSx SINE Alu -3 309 1 413 349 198 31 chr11 15025114 15025643 -135757910 + L2 LINE L2 2011 2877 -437 363 331 54 24 chr11 15026143 15026309 -135757244 + L2 LINE L2 3102 3272 0 432 0 0 0 chr11 15026557 15026605 -135756948 + (CA)n Simple_repeat Simple_repeat 2 49 0 1127 168 0 11 chr11 15026833 15027024 -135756529 - AluJo SINE Alu -18 294 106 5118 151 32 12 chr11 15028501 15029562 -135753991 + L1MB3 LINE L1 5099 6183 0 22 35 0 0 chr11 15029564 15029593 -135753960 + AT_rich Low_complexity Low_complexity 1 29 0 1753 179 3 7 chr11 15030484 15030785 -135752768 - AluJo SINE Alu -6 306 7 544 265 236 18 chr11 15031390 15031881 -135751672 - L1MC4 LINE L1 -84 7958 7361 255 175 63 32 chr11 15032075 15032138 -135751415 + L1MEc LINE L1 415 479 -5917 1068 272 70 19 chr11 15032182 15032394 -135751159 + L1MEc LINE L1 1254 1454 -4942 414 0 0 0 chr11 15032394 15032440 -135751113 + (CA)n Simple_repeat Simple_repeat 2 47 0 1068 272 70 19 chr11 15032440 15032745 -135750808 + L1MEc LINE L1 1454 1797 -4599 2212 85 0 14 chr11 15033130 15033425 -135750128 + AluSq SINE Alu 1 291 -22 8888 123 40 19 chr11 15033652 15034461 -135749092 - Tigger1 DNA MER2_type -946 1472 620 2094 108 30 3 chr11 15034461 15034756 -135748797 - AluSg SINE Alu -4 306 4 8888 123 40 19 chr11 15034756 15035389 -135748164 - Tigger1 DNA MER2_type -1798 620 1 358 270 176 0 chr11 15035389 15035535 -135748018 + MER2 DNA MER2_type 174 345 0 182 225 0 0 chr11 15035931 15035971 -135747582 + L2 LINE L2 3271 3310 -3 2330 100 7 0 chr11 15036308 15036618 -135746935 + AluSx SINE Alu 1 312 0 445 242 100 0 chr11 15036744 15036864 -135746689 + MIR SINE MIR 117 248 -14 311 258 57 6 chr11 15037586 15037696 -135745857 + MIR SINE MIR 2 143 -65 408 335 21 53 chr11 15037946 15038134 -135745419 - MIR3 SINE MIR -17 191 10 186 43 0 0 chr11 15038254 15038277 -135745276 + (T)n Simple_repeat Simple_repeat 1 23 0 807 61 35 0 chr11 15038612 15038726 -135744827 + AluY SINE Alu 16 133 -178 397 119 17 0 chr11 15038924 15038983 -135744570 + U7 snRNA snRNA 2 61 -2 216 0 0 0 chr11 15038989 15039013 -135744540 + (A)n Simple_repeat Simple_repeat 1 24 0 1582 189 10 17 chr11 15039834 15040135 -135743418 - AluJo SINE Alu -13 299 1 21 71 0 0 chr11 15040730 15040772 -135742781 + AT_rich Low_complexity Low_complexity 1 42 0 298 275 91 42 chr11 15041345 15041629 -135741924 + L1MC4a LINE L1 7315 7636 -172 725 219 269 12 chr11 15041733 15041825 -135741728 - L1MC4 LINE L1 -11 8031 7964 2085 124 3 13 chr11 15041825 15042123 -135741430 - AluSx SINE Alu -17 295 1 725 219 269 12 chr11 15042123 15042350 -135741203 - L1MC4 LINE L1 -78 7964 7630 2365 85 0 3 chr11 15042572 15042867 -135740686 - AluSx SINE Alu -18 294 1 284 0 28 0 chr11 15043255 15043291 -135740262 + (CA)n Simple_repeat Simple_repeat 1 37 0 22 56 0 0 chr11 15043633 15043669 -135739884 + AT_rich Low_complexity Low_complexity 1 36 0 3064 189 71 46 chr11 15043699 15044472 -135739081 + L1MC4a LINE L1 6947 7744 -64 2233 113 0 3 chr11 15044472 15044774 -135738779 + AluSc SINE Alu 4 304 -5 3064 189 71 46 chr11 15044774 15044841 -135738712 + L1MC4a LINE L1 7744 7808 0 1219 163 69 105 chr11 15045046 15045352 -135738201 - AluJo SINE Alu -6 296 2 691 195 0 0 chr11 15045375 15045498 -135738055 - FLAM_C SINE Alu -20 123 1 1977 111 52 85 chr11 15045501 15045596 -135737957 - Tigger2a DNA MER2_type -2334 374 277 2034 123 17 3 chr11 15045596 15045888 -135737665 + AluSx SINE Alu 1 296 -16 1977 111 52 85 chr11 15045888 15046179 -135737374 - Tigger2a DNA MER2_type -2431 277 1 2248 114 3 0 chr11 15047426 15047734 -135735819 + AluSg SINE Alu 1 309 -1 25 31 0 0 chr11 15048403 15048435 -135735118 + AT_rich Low_complexity Low_complexity 1 32 0 3970 166 22 9 chr11 15049187 15049928 -135733625 + L1MB3 LINE L1 5427 6176 -7 23 0 0 0 chr11 15050328 15050351 -135733202 + AT_rich Low_complexity Low_complexity 1 23 0 2140 117 3 3 chr11 15050818 15051117 -135732436 - AluSg SINE Alu -9 301 3 954 115 8 0 chr11 15051120 15051250 -135732303 - AluSc SINE Alu -54 255 125 2253 117 0 0 chr11 15051492 15051800 -135731753 + AluSq SINE Alu 1 308 -5 483 272 10 77 chr11 15051932 15052127 -135731426 - MER102a DNA MER1_type -9 321 140 284 277 121 15 chr11 15053170 15053325 -135730228 + MIR3 SINE MIR 2 176 -32 328 256 0 12 chr11 15053993 15054075 -135729478 + L3 LINE CR1 1317 1397 -180 1009 113 0 0 chr11 15054157 15054290 -135729263 - AluSq/x SINE Alu -177 135 3 24 0 0 0 chr11 15054879 15054903 -135728650 + AT_rich Low_complexity Low_complexity 1 24 0 6871 119 30 7 chr11 15054963 15056945 -135726608 + L1MA2 LINE L1 4277 6303 -1 301 221 92 107 chr11 15058169 15058300 -135725253 + L1MDb LINE L1 597 725 -5684 1941 163 128 5 chr11 15059510 15059940 -135723613 - L1MD2 LINE L1 -62 6297 5815 1918 143 14 7 chr11 15060593 15060886 -135722667 - AluJo SINE Alu -17 295 1 2262 80 0 14 chr11 15061301 15061587 -135721966 - AluSx SINE Alu -19 293 12 339 25 0 0 chr11 15061765 15061805 -135721748 + (TG)n Simple_repeat Simple_repeat 1 40 0 187 246 88 0 chr11 15062144 15062201 -135721352 - MIR SINE MIR -93 115 54 2285 48 65 3 chr11 15062301 15062594 -135720959 - AluY SINE Alu 0 311 1 26 0 0 0 chr11 15062604 15062630 -135720923 + AT_rich Low_complexity Low_complexity 1 26 0 2351 89 0 7 chr11 15062630 15062923 -135720630 - AluSp SINE Alu -22 291 1 21 0 0 0 chr11 15064032 15064053 -135719500 + AT_rich Low_complexity Low_complexity 1 21 0 316 183 33 0 chr11 15064053 15064113 -135719440 + Tigger2 DNA MER2_type 1 62 -2656 525 98 20 29 chr11 15064201 15064303 -135719250 + Tigger2 DNA MER2_type 110 210 -2508 1721 182 0 19 chr11 15064303 15064611 -135718942 + AluJo SINE Alu 1 302 -10 767 188 40 0 chr11 15064621 15064770 -135718783 + Tigger2 DNA MER2_type 2554 2708 -10 642 236 58 116 chr11 15065273 15065722 -135717831 + MLT1H LTR MaLR 120 542 -7 2356 76 3 3 chr11 15065743 15066046 -135717507 - AluSc SINE Alu -6 303 1 2011 244 156 101 chr11 15066682 15068074 -135715479 + L2 LINE L2 1201 2669 -645 313 102 0 0 chr11 15068075 15068124 -135715429 - AluSx SINE Alu -6 294 246 1197 121 0 0 chr11 15068124 15068281 -135715272 - AluSx SINE Alu -155 157 1 2555 45 0 29 chr11 15068294 15068603 -135714950 - AluY SINE Alu -11 300 1 1067 280 149 23 chr11 15068604 15069198 -135714355 + L2 LINE L2 2664 3311 -2 2615 226 118 11 chr11 15069879 15069965 -135713588 + L1M4 LINE L1 3626 3701 -2445 225 0 0 0 chr11 15069965 15069990 -135713563 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2615 226 118 11 chr11 15069990 15070673 -135712880 + L1M4 LINE L1 3701 4501 -1645 2361 90 3 0 chr11 15070673 15070974 -135712579 + AluSp SINE Alu 1 302 -11 2615 226 118 11 chr11 15070974 15071078 -135712475 + L1M4 LINE L1 4501 4593 -1553 705 273 125 29 chr11 15071099 15071410 -135712143 + MER68 LTR ERV1 215 555 -7 197 325 36 24 chr11 15071872 15071955 -135711598 + MER5A DNA MER1_type 76 159 -30 21 0 0 0 chr11 15072022 15072043 -135711510 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr11 15072113 15072133 -135711420 + (A)n Simple_repeat Simple_repeat 1 20 0 23 54 0 0 chr11 15072328 15072365 -135711188 + AT_rich Low_complexity Low_complexity 1 37 0 900 180 29 15 chr11 15073822 15074028 -135709525 + MER33 DNA MER1_type 6 214 -110 1771 87 0 0 chr11 15074133 15074352 -135709201 - AluSq SINE Alu -12 301 83 21 0 0 0 chr11 15074530 15074551 -135709002 + AT_rich Low_complexity Low_complexity 1 21 0 2367 88 7 0 chr11 15074551 15074846 -135708707 + AluSx SINE Alu 1 297 -15 182 330 36 62 chr11 15075090 15075202 -135708351 + L2 LINE L2 3200 3308 -5 1796 164 10 3 chr11 15076013 15076306 -135707247 - AluJo SINE Alu -17 295 1 1244 214 55 48 chr11 15076332 15076753 -135706800 - L1MA9 LINE L1 -39 6273 5850 242 301 43 11 chr11 15077650 15077743 -135705810 + MIR3 SINE MIR 85 180 -28 289 23 186 0 chr11 15078753 15078796 -135704757 + MADE1 DNA Mariner 3 53 -27 249 313 152 27 chr11 15078867 15078979 -135704574 + L2 LINE L2 3127 3252 -20 1419 175 45 34 chr11 15079083 15079206 -135704347 + AluJb SINE Alu 1 121 -191 210 105 0 0 chr11 15079206 15079244 -135704309 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1419 175 45 34 chr11 15079244 15079412 -135704141 + AluJb SINE Alu 121 295 -17 2224 59 63 0 chr11 15079412 15079697 -135703856 + AluSg SINE Alu 1 304 -6 375 219 63 0 chr11 15079698 15079807 -135703746 - L1ME LINE L1 -539 5583 5470 291 284 25 0 chr11 15079851 15079932 -135703621 + L2 LINE L2 3231 3313 0 756 269 73 42 chr11 15080118 15080661 -135702892 - L1ME4a LINE L1 -296 5825 5259 451 225 0 0 chr11 15080823 15080903 -135702650 + L2 LINE L2 3234 3313 0 1918 164 0 3 chr11 15081186 15081479 -135702074 - AluJo SINE Alu -20 292 1 1960 140 27 0 chr11 15081499 15081791 -135701762 - AluJo SINE Alu -12 300 1 614 188 30 38 chr11 15081902 15082035 -135701518 + AluJo SINE Alu 2 133 -169 189 171 0 0 chr11 15082050 15082085 -135701468 + GA-rich Low_complexity Low_complexity 4 38 0 502 188 0 0 chr11 15082089 15082169 -135701384 + AluJo SINE Alu 130 209 -103 1237 176 113 74 chr11 15082169 15082602 -135700951 + LTR7 LTR ERV1 1 450 0 651 161 35 7 chr11 15082602 15082745 -135700808 + HERVH LTR ERV1 1 147 -7566 * 12933 104 13 8 chr11 15082742 15084781 -135698772 + HERVH LTR ERV1 1945 3993 -3720 5666 122 5 4 chr11 15084764 15085686 -135697867 + HERVH LTR ERV1 3995 5287 -1804 * 264 29 0 0 chr11 15085685 15085719 -135697834 + HERVH LTR ERV1 4882 4915 -2798 * 1395 173 8 0 chr11 15085716 15085982 -135697571 + HERVH LTR ERV1 5749 6016 -1697 * 3248 114 14 23 chr11 15085975 15086537 -135697016 + HERVH LTR ERV1 7157 7713 0 1158 178 113 76 chr11 15086538 15086971 -135696582 + LTR7 LTR ERV1 2 450 0 434 89 241 0 chr11 15086971 15087050 -135696503 + AluJo SINE Alu 205 302 -10 497 176 40 101 chr11 15087855 15088003 -135695550 + L2 LINE L2 3175 3313 0 2318 110 0 0 chr11 15088530 15088829 -135694724 + AluSg SINE Alu 1 299 -11 2139 145 47 0 chr11 15089043 15089365 -135694188 - L1PA16 LINE L1 0 6166 5824 1853 175 10 0 chr11 15089365 15089668 -135693885 - AluJb SINE Alu -6 306 1 2139 145 47 0 chr11 15089668 15089704 -135693849 - L1PA16 LINE L1 -342 5824 5791 539 294 25 12 chr11 15089712 15089875 -135693678 + LTR33 LTR ERVL 80 244 -277 35 24 0 0 chr11 15090404 15090446 -135693107 + AT_rich Low_complexity Low_complexity 1 42 0 2178 131 0 0 chr11 15090502 15090799 -135692754 - AluSx SINE Alu -15 297 1 23 0 0 0 chr11 15090869 15090892 -135692661 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 15092098 15092121 -135691432 + AT_rich Low_complexity Low_complexity 1 23 0 2523 55 0 13 chr11 15092354 15092665 -135690888 + AluY SINE Alu 1 307 -4 1659 47 0 19 chr11 15093683 15093896 -135689657 + L1PA5 LINE L1 5946 6154 0 269 275 50 12 chr11 15095467 15095547 -135688006 - MIR3 SINE MIR -22 186 104 438 211 0 70 chr11 15095569 15095646 -135687907 - Charlie4a DNA MER1_type -1453 508 440 1771 131 91 0 chr11 15095646 15095921 -135687632 - AluSx SINE Alu -12 300 1 438 211 0 70 chr11 15095921 15095957 -135687596 - Charlie4a DNA MER1_type -1521 440 403 696 218 0 0 chr11 15096007 15096131 -135687422 + FLAM_A SINE Alu 1 124 -9 622 153 15 23 chr11 15096178 15096309 -135687244 - L1MB7 LINE L1 -1 6183 6054 453 132 28 66 chr11 15096442 15096470 -135687083 - L1MB8 LINE L1 -6 6172 6144 1062 181 34 10 chr11 15096470 15096675 -135686878 + MER6B DNA MER2_type 1 210 0 453 132 28 66 chr11 15096675 15096752 -135686801 - L1MB8 LINE L1 -34 6144 6071 2928 157 21 28 chr11 15096753 15096836 -135686717 + L1MB7 LINE L1 5078 5160 -1024 1846 139 35 14 chr11 15096836 15097124 -135686429 - AluJb SINE Alu -18 294 1 2928 157 21 28 chr11 15097124 15097804 -135685749 + L1MB7 LINE L1 5160 5833 -351 499 206 131 6 chr11 15097817 15097977 -135685576 + L1MB7 LINE L1 5995 6174 -10 1237 134 21 198 chr11 15097981 15098102 -135685451 - Charlie4a DNA MER1_type -1545 416 275 2414 91 26 3 chr11 15098102 15098444 -135685109 - L1PA10 LINE L1 -5 6163 5814 1237 134 21 198 chr11 15098444 15098808 -135684745 - Charlie4a DNA MER1_type -1686 275 17 216 269 19 0 chr11 15098849 15098901 -135684652 - MIR SINE MIR -125 83 31 222 219 0 0 chr11 15098914 15098955 -135684598 + CT-rich Low_complexity Low_complexity 3 43 0 2071 129 0 0 chr11 15099247 15099526 -135684027 - AluSg SINE Alu -31 279 1 21 0 0 0 chr11 15099879 15099900 -135683653 + AT_rich Low_complexity Low_complexity 1 21 0 212 0 36 0 chr11 15100808 15100836 -135682717 + (CA)n Simple_repeat Simple_repeat 2 30 0 207 275 147 0 chr11 15100871 15100980 -135682573 - MIR SINE MIR 0 262 138 350 281 34 0 chr11 15101061 15101150 -135682403 - MIR SINE MIR -145 117 26 359 281 8 31 chr11 15101169 15101297 -135682256 + (TATATG)n Simple_repeat Simple_repeat 3 127 0 654 248 0 14 chr11 15101298 15101443 -135682110 - MER63A DNA MER1_type -23 187 45 2493 74 0 0 chr11 15102210 15102509 -135681044 + AluY SINE Alu 1 299 -12 29 0 0 0 chr11 15103548 15103577 -135679976 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr11 15104677 15104700 -135678853 + AT_rich Low_complexity Low_complexity 1 23 0 1913 158 7 10 chr11 15105611 15105915 -135677638 - AluJo SINE Alu -9 303 1 5116 190 53 21 chr11 15105947 15107502 -135676051 - L1MD2 LINE L1 -12 6347 4747 562 185 141 0 chr11 15107546 15107681 -135675872 - MIR SINE MIR -13 249 96 2285 224 138 51 chr11 15108266 15109363 -135674190 - HAL1 LINE L1 -13 2494 1303 655 224 29 0 chr11 15109458 15109628 -135673925 - L1M4 LINE L1 -1107 5039 4865 1424 186 29 25 chr11 15109650 15109925 -135673628 - AluJo SINE Alu -36 276 1 317 216 278 12 chr11 15109928 15110012 -135673541 - HAL1 LINE L1 -1258 1249 1189 2417 72 0 34 chr11 15110012 15110332 -135673221 - AluSc SINE Alu 0 309 1 317 216 278 12 chr11 15110332 15110409 -135673144 - HAL1 LINE L1 -1318 1189 1045 635 311 108 10 chr11 15110425 15110730 -135672823 - HAL1 LINE L1 -1917 590 256 1511 193 10 26 chr11 15110926 15111237 -135672316 + AluJo SINE Alu 6 311 -1 237 209 0 0 chr11 15111929 15111972 -135671581 + GA-rich Low_complexity Low_complexity 2 44 0 1177 264 107 22 chr11 15112585 15112986 -135670567 - LTR16A LTR ERVL 0 450 16 307 291 70 45 chr11 15113008 15113207 -135670346 - HERV16 LTR ERVL -6 4990 4787 574 357 13 37 chr11 15113343 15113643 -135669910 - HERV16 LTR ERVL -790 4864 4572 225 290 50 55 chr11 15113685 15113885 -135669668 + L1ME4a LINE L1 5919 6117 -4 704 22 33 0 chr11 15114579 15114671 -135668882 + (CTAAA)n Simple_repeat Simple_repeat 1 95 0 738 231 48 11 chr11 15114696 15114882 -135668671 - LTR33A LTR ERVL 0 523 331 310 334 48 57 chr11 15115310 15115419 -135668134 - L1M4 LINE L1 -1380 4766 4657 1362 107 226 8 chr11 15115419 15115662 -135667891 - AluJb SINE Alu -16 296 1 310 334 48 57 chr11 15115662 15115866 -135667687 - L1M4 LINE L1 -1489 4657 4456 276 270 190 15 chr11 15116272 15116409 -135667144 + L3 LINE CR1 1380 1540 -37 376 238 76 70 chr11 15116422 15116607 -135666946 - L1ME4a LINE L1 -1 6120 5935 4227 165 48 10 chr11 15116762 15117536 -135666017 - L1MD1 LINE L1 -1 6241 5439 1826 154 26 22 chr11 15117558 15117869 -135665684 - AluJb SINE Alu 0 312 1 1485 234 46 7 chr11 15117869 15118323 -135665230 - L1M4 LINE L1 -2678 3468 2997 1631 245 90 51 chr11 15118392 15119232 -135664321 - L2 LINE L2 -4 3309 2456 246 200 36 0 chr11 15119713 15119768 -135663785 - MLT1K LTR MaLR -530 58 2 3504 181 42 14 chr11 15120322 15120957 -135662596 - MER82 DNA MER2_type 0 653 1 536 344 32 0 chr11 15121215 15121404 -135662149 - MER117 DNA MER1_type -2 195 1 2116 129 114 9 chr11 15121686 15122027 -135661526 - THE1-int LTR MaLR -843 737 361 31945 82 9 6 chr11 15122029 15123852 -135659701 + L1P LINE L1 1 1816 -4330 2059 107 0 4 chr11 15123852 15124153 -135659400 - AluY SINE Alu 0 300 1 31945 82 9 6 chr11 15124153 15126608 -135656945 + L1P LINE L1 1816 4294 -1852 3800 184 70 0 chr11 15126608 15127289 -135656264 + MST-int LTR MaLR 233 961 -690 2627 115 30 3 chr11 15127289 15127654 -135655899 + THE1C LTR MaLR 1 375 0 2598 102 13 5 chr11 15127654 15128026 -135655527 + THE1C-int LTR MaLR 1 375 -1205 21 0 0 0 chr11 15128026 15128047 -135655506 + AT_rich Low_complexity Low_complexity 1 21 0 9113 49 1 20 chr11 15128056 15129945 -135653608 - L1PA5 LINE L1 -6 6148 4282 669 226 4 128 chr11 15129945 15130192 -135653361 - MIR SINE MIR -34 228 12 386 264 32 19 chr11 15130193 15130348 -135653205 + L2 LINE L2 737 893 -2421 957 249 19 5 chr11 15130400 15130605 -135652948 - MIR SINE MIR -48 214 7 2052 60 8 4 chr11 15130773 15131024 -135652529 + L1PA7 LINE L1 5902 6153 -1 181 233 256 22 chr11 15131739 15131829 -135651724 - MIR SINE MIR -66 196 86 1269 220 157 67 chr11 15131932 15132378 -135651175 - MLT1D LTR MaLR -19 486 1 489 335 85 46 chr11 15132867 15133440 -135650113 + L2 LINE L2 2675 3271 -1 512 216 0 61 chr11 15134166 15134314 -135649239 + MIR SINE MIR 83 221 -41 982 281 65 42 chr11 15134419 15134803 -135648750 - MLT1K LTR MaLR 0 588 196 534 193 82 7 chr11 15134893 15135028 -135648525 - MER69 DNA AcHobo -1 2525 2381 365 187 120 13 chr11 15135154 15135229 -135648324 - MER69 DNA AcHobo -115 62 1 197 33 33 0 chr11 15135242 15135272 -135648281 + (CAA)n Simple_repeat Simple_repeat 1 31 0 2109 117 3 41 chr11 15135305 15135621 -135647932 - AluSx SINE Alu -8 304 1 225 221 21 11 chr11 15135945 15136040 -135647513 + CT-rich Low_complexity Low_complexity 1 96 0 258 56 0 0 chr11 15137282 15137318 -135646235 + (T)n Simple_repeat Simple_repeat 1 36 0 235 245 0 19 chr11 15138551 15138604 -135644949 + MER5B DNA MER1_type 1 52 -126 318 161 0 36 chr11 15138608 15138664 -135644889 + MER31A LTR ERV1 350 403 -82 239 288 12 25 chr11 15138670 15138750 -135644803 + MER5B DNA MER1_type 50 128 -50 2194 124 0 0 chr11 15138940 15139238 -135644315 + AluSx SINE Alu 1 298 -14 1864 127 0 4 chr11 15139545 15139812 -135643741 - AluSc SINE Alu -5 304 39 754 266 109 46 chr11 15139926 15140385 -135643168 + LTR33A LTR ERVL 12 499 -24 437 263 225 10 chr11 15140425 15140634 -135642919 + MIR SINE MIR 9 262 0 273 323 48 118 chr11 15140730 15141086 -135642467 - L2 LINE L2 -1 3271 2941 652 302 31 36 chr11 15141491 15141713 -135641840 + L2 LINE L2 2744 2964 -350 924 247 96 53 chr11 15141742 15142119 -135641434 + L2 LINE L2 2824 3216 -97 587 207 7 0 chr11 15142119 15142254 -135641299 + (TA)n Simple_repeat Simple_repeat 2 137 0 1323 166 67 107 chr11 15142261 15142634 -135640919 - LTR47B LTR ERVL -85 358 1 2549 147 40 7 chr11 15142708 15143158 -135640395 + L1MB3 LINE L1 5717 6181 -2 314 288 96 35 chr11 15143211 15143409 -135640144 - L2 LINE L2 -1268 2046 1837 3849 138 82 87 chr11 15143677 15145061 -135638492 + pTR5 LTR ERV1 66 2438 0 207 0 0 0 chr11 15145145 15145168 -135638385 + (TC)n Simple_repeat Simple_repeat 2 24 0 2315 83 0 0 chr11 15145185 15145475 -135638078 - AluY SINE Alu -21 290 1 418 260 0 19 chr11 15145475 15145579 -135637974 + L2 LINE L2 3210 3311 -2 581 240 52 70 chr11 15145605 15145834 -135637719 + L2 LINE L2 3000 3224 -89 506 302 111 5 chr11 15145858 15146047 -135637506 - MIR SINE MIR -31 231 23 441 0 0 0 chr11 15146404 15146453 -135637100 + (GA)n Simple_repeat Simple_repeat 1 49 0 227 239 14 42 chr11 15146593 15146664 -135636889 + MLT1L LTR MaLR 5 73 -542 416 219 34 50 chr11 15146715 15146834 -135636719 + MLT1L LTR MaLR 174 290 -325 353 67 0 0 chr11 15147046 15147091 -135636462 + (GA)n Simple_repeat Simple_repeat 1 45 0 244 225 14 42 chr11 15147231 15147302 -135636251 + MLT1L LTR MaLR 5 73 -542 436 204 15 88 chr11 15147353 15147490 -135636063 + MLT1L LTR MaLR 174 300 -315 629 225 127 6 chr11 15147515 15147688 -135635865 + MLT1L LTR MaLR 422 615 0 38916 81 13 7 chr11 15148188 15154301 -135629252 - L1PA6 LINE L1 -1 6153 11 334 327 10 10 chr11 15155164 15155265 -135628288 - MIR SINE MIR -155 107 7 550 240 53 0 chr11 15157069 15157219 -135626334 + Tigger8 DNA MER2_type 335 492 -174 1759 118 0 8 chr11 15157551 15157788 -135625765 - AluSx SINE Alu -77 235 1 5313 158 27 36 chr11 15157994 15158815 -135624738 - L1PA16 LINE L1 -5 6161 5345 1975 153 0 10 chr11 15158815 15159115 -135624438 - AluJo SINE Alu -15 297 1 5313 158 27 36 chr11 15159115 15159730 -135623823 - L1PA16 LINE L1 -821 5345 4726 774 167 0 8 chr11 15159749 15159875 -135623678 + AluJb SINE Alu 188 312 0 1551 258 98 7 chr11 15160995 15161413 -135622140 - LTR16B LTR ERVL 0 464 9 1629 170 18 7 chr11 15161501 15161777 -135621776 + AluJo SINE Alu 4 282 -30 21 0 0 0 chr11 15161777 15161798 -135621755 + AT_rich Low_complexity Low_complexity 1 21 0 1716 50 0 0 chr11 15161798 15162000 -135621553 + L1PA4 LINE L1 5951 6152 -3 320 238 43 6 chr11 15162024 15162188 -135621365 + (TA)n Simple_repeat Simple_repeat 1 170 0 31 58 0 0 chr11 15162145 15162197 -135621356 + AT_rich Low_complexity Low_complexity 1 52 0 * 1357 239 118 28 chr11 15162744 15163473 -135620080 - L2 LINE L2 0 3313 2511 191 339 0 0 chr11 15164781 15164843 -135618710 + MIR SINE MIR 200 261 -1 185 234 16 0 chr11 15165166 15165230 -135618323 + CT-rich Low_complexity Low_complexity 4 68 0 21 36 0 0 chr11 15165703 15165731 -135617822 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr11 15166079 15166106 -135617447 + AT_rich Low_complexity Low_complexity 1 27 0 1969 96 3 96 chr11 15166651 15166974 -135616579 - AluSx SINE Alu -19 293 1 185 258 32 32 chr11 15167381 15167443 -135616110 - L2 LINE L2 0 3313 3252 945 362 43 19 chr11 15167861 15168663 -135614890 + L2 LINE L2 2241 3062 -210 1300 270 130 4 chr11 15168685 15169148 -135614405 + LTR33 LTR ERVL 1 521 0 2027 135 10 3 chr11 15169653 15169950 -135613603 - AluSx SINE Alu -10 302 4 1062 239 39 16 chr11 15170052 15170307 -135613246 - MIR SINE MIR 0 262 2 290 348 126 7 chr11 15170796 15170931 -135612622 + L2 LINE L2 3122 3272 0 270 231 0 0 chr11 15171084 15171149 -135612404 + (TATATG)n Simple_repeat Simple_repeat 1 65 0 284 303 67 0 chr11 15171304 15171393 -135612160 + MIR SINE MIR 8 102 -160 208 359 76 0 chr11 15172430 15172522 -135611031 - L2 LINE L2 -2 3270 3172 1607 188 35 0 chr11 15172588 15172870 -135610683 + AluJb SINE Alu 1 292 -20 312 91 0 0 chr11 15173477 15173521 -135610032 + (TG)n Simple_repeat Simple_repeat 2 45 0 186 43 0 0 chr11 15174693 15174716 -135608837 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1518 125 96 48 chr11 15174720 15174992 -135608561 - AluJo SINE Alu -27 285 1 498 174 33 0 chr11 15175300 15175392 -135608161 - MIR SINE MIR -10 252 158 1821 310 26 5 chr11 15175555 15176132 -135607421 + HERV16 LTR ERVL 2433 3021 -1975 469 333 17 8 chr11 15176315 15176552 -135607001 - L1ME3 LINE L1 -1 6161 5923 1029 230 20 17 chr11 15176629 15176925 -135606628 - L1ME3 LINE L1 -263 5899 5603 2507 98 33 0 chr11 15176941 15177309 -135606244 - L1PA10 LINE L1 -5 6163 5784 14178 50 3 5 chr11 15177409 15179274 -135604279 - L1P LINE L1 -4284 1862 2 3535 32 2 0 chr11 15179280 15179720 -135603833 - L1PA10 LINE L1 -373 5782 5342 181 244 0 24 chr11 15179720 15179761 -135603792 - L2 LINE L2 -81 3232 3193 574 174 0 0 chr11 15179986 15180084 -135603469 + AluJ/FLAM SINE Alu 1 98 -214 27241 32 10 3 chr11 15180233 15184519 -135599034 + L1PA3 LINE L1 1841 6155 0 2980 46 0 0 chr11 15184537 15184933 -135598620 + L1PA4 LINE L1 5770 6165 0 279 203 257 0 chr11 15184940 15185014 -135598539 + L2 LINE L2 3221 3313 0 963 267 92 49 chr11 15186035 15186525 -135597028 - LTR33 LTR ERVL 0 521 11 1950 67 11 11 chr11 15186538 15186806 -135596747 - L1PA5 LINE L1 -6 6148 5881 650 283 102 13 chr11 15187220 15187446 -135596107 + MIR SINE MIR 17 262 0 635 322 75 33 chr11 15187459 15187791 -135595762 + L3 LINE CR1 1232 1577 0 643 240 16 0 chr11 15187947 15188076 -135595477 - FLAM_A SINE Alu -2 131 1 565 231 41 112 chr11 15188078 15188346 -135595207 - L2 LINE L2 -8 3305 3057 217 233 0 0 chr11 15188478 15188521 -135595032 + L2 LINE L2 2247 2289 -1025 * 228 252 0 107 chr11 15188520 15188623 -135594930 - L2 LINE L2 0 3313 3222 1822 313 84 45 chr11 15188632 15189962 -135593591 + HERV16 LTR ERVL 3135 4314 -682 308 270 24 56 chr11 15190030 15190156 -135593397 - HERV16 LTR ERVL -1644 3352 3231 767 275 33 69 chr11 15190197 15190905 -135592648 + HERV16 LTR ERVL 4505 4996 0 2179 131 3 0 chr11 15190935 15191226 -135592327 + AluSq SINE Alu 3 294 -19 1629 258 42 7 chr11 15191228 15191658 -135591895 + LTR16B LTR ERVL 20 464 0 233 280 144 51 chr11 15192327 15192445 -135591108 + MIR3 SINE MIR 10 138 -70 1758 169 55 39 chr11 15192622 15193006 -135590547 - MLT1B LTR MaLR 0 390 1 550 292 16 65 chr11 15193073 15193258 -135590295 + MER5A DNA MER1_type 14 189 0 540 231 91 91 chr11 15193268 15193510 -135590043 + MIR SINE MIR 20 261 -1 1518 129 64 0 chr11 15193700 15193933 -135589620 + MER1B DNA MER1_type 1 248 -91 11674 27 4 0 chr11 15193933 15196089 -135587464 - L1PA2 LINE L1 0 6155 3995 25791 42 47 2 chr11 15196189 15199628 -135583925 - L1PA2 LINE L1 -2548 3598 7 605 91 101 0 chr11 15199628 15199727 -135583826 + MER1B DNA MER1_type 231 339 0 828 154 8 0 chr11 15199988 15200111 -135583442 - AluJb SINE Alu -188 124 1 1120 352 99 38 chr11 15201646 15202982 -135580571 + L2 LINE L2 1825 3254 -18 515 239 120 25 chr11 15203458 15203679 -135579874 - MIR SINE MIR 0 262 25 4576 89 33 34 chr11 15204086 15205036 -135578517 - MER11A LTR ERVK -167 1069 1 2335 123 0 0 chr11 15205189 15205498 -135578055 - AluSx SINE Alu -3 309 1 26 30 0 0 chr11 15205904 15205937 -135577616 + AT_rich Low_complexity Low_complexity 1 33 0 2351 100 0 0 chr11 15206446 15206755 -135576798 - AluY SINE Alu -2 309 1 23 33 0 0 chr11 15206759 15206789 -135576764 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr11 15207787 15207818 -135575735 + AT_rich Low_complexity Low_complexity 1 31 0 752 132 8 0 chr11 15207818 15207947 -135575606 + (TC)n Simple_repeat Simple_repeat 1 130 0 2017 127 10 0 chr11 15208506 15208806 -135574747 - AluSx SINE Alu 0 312 10 239 284 9 55 chr11 15209028 15209137 -135574416 - L2 LINE L2 -992 2322 2219 1796 235 127 6 chr11 15209477 15209980 -135573573 + MER69 DNA AcHobo 5 568 -658 1012 175 180 43 chr11 15209978 15210423 -135573130 + MER69 DNA AcHobo 2010 2515 -11 * 879 232 73 31 chr11 15211308 15211567 -135571986 - L2 LINE L2 -1 3312 3043 1915 153 0 20 chr11 15211728 15212022 -135571531 + AluJo SINE Alu 1 288 -24 241 191 0 0 chr11 15212033 15212080 -135571473 + MIR SINE MIR 146 192 -70 13237 120 29 12 chr11 15212156 15214506 -135569047 + Tigger1 DNA MER2_type 31 2418 0 343 328 88 97 chr11 15215714 15216065 -135567488 + L2 LINE L2 2925 3272 0 241 353 27 60 chr11 15216400 15216550 -135567003 + L2 LINE L2 3119 3263 -9 838 163 6 30 chr11 15217010 15217176 -135566377 + L1PA6 LINE L1 5993 6154 0 283 404 26 26 chr11 15217847 15218040 -135565513 - MIR3 SINE MIR -9 199 7 213 121 0 0 chr11 15218072 15218105 -135565448 + (CA)n Simple_repeat Simple_repeat 1 33 0 338 284 113 105 chr11 15219504 15220026 -135563527 - L1M2 LINE L1 -5506 1343 818 360 296 177 15 chr11 15221849 15222052 -135561501 - MIR SINE MIR -15 247 12 190 130 19 37 chr11 15222193 15222247 -135561306 + CT-rich Low_complexity Low_complexity 3 55 0 275 361 46 0 chr11 15223283 15223391 -135560162 + MIR3 SINE MIR 79 191 -17 21 57 0 0 chr11 15223821 15223856 -135559697 + AT_rich Low_complexity Low_complexity 1 35 0 233 346 23 30 chr11 15224571 15224704 -135558849 + L2 LINE L2 2685 2816 -498 378 275 56 79 chr11 15225281 15225459 -135558094 - MIR3 SINE MIR -5 203 30 1439 165 4 23 chr11 15226165 15226426 -135557127 - AluJb SINE Alu -12 300 45 768 162 147 35 chr11 15226426 15226623 -135556930 + MLT1D LTR MaLR 27 245 -260 487 31 0 0 chr11 15226645 15226709 -135556844 + AluYa5/8 SINE Alu 171 234 -76 1142 213 29 23 chr11 15226710 15226962 -135556591 + MLT1D LTR MaLR 251 630 -24 2152 146 88 52 chr11 15226962 15227407 -135556146 - MLT1C LTR MaLR -2 465 5 1142 213 29 23 chr11 15227407 15227429 -135556124 + MLT1D LTR MaLR 630 650 -4 386 283 5 91 chr11 15227444 15227631 -135555922 - L1M4 LINE L1 -604 5580 5410 593 260 52 24 chr11 15227637 15227887 -135555666 - L1M4 LINE L1 -1161 4985 4729 1078 186 20 69 chr11 15227892 15228198 -135555355 - L1M4 LINE L1 -957 5189 4899 2536 197 25 39 chr11 15228331 15228606 -135554947 - L1M4 LINE L1 -1272 4874 4597 1502 141 70 0 chr11 15228606 15228890 -135554663 - L1MB2 LINE L1 -2 6169 5866 2536 197 25 39 chr11 15228890 15229263 -135554290 - L1M4 LINE L1 -1549 4597 4235 260 319 125 43 chr11 15229283 15229515 -135554038 + L1MEd LINE L1 510 760 -5359 990 93 0 0 chr11 15229527 15229667 -135553886 + AluY SINE Alu 172 311 0 1779 170 7 3 chr11 15229789 15230078 -135553475 + AluJb SINE Alu 1 290 -22 482 289 49 40 chr11 15230117 15230594 -135552959 + L1MEd LINE L1 1078 1601 -4709 405 0 0 0 chr11 15230860 15230905 -135552648 + (CA)n Simple_repeat Simple_repeat 2 46 0 238 250 108 0 chr11 15231207 15231327 -135552226 + L1MEd LINE L1 2318 2450 -3679 180 176 0 0 chr11 15231341 15231375 -135552178 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 194 352 157 0 chr11 15231506 15231614 -135551939 - L2 LINE L2 -20 3252 3128 193 341 73 16 chr11 15232130 15232253 -135551300 - L2 LINE L2 -829 2485 2356 749 238 48 61 chr11 15232547 15232778 -135550775 + MIR SINE MIR 34 261 -1 21 0 0 0 chr11 15233782 15233803 -135549750 + AT_rich Low_complexity Low_complexity 1 21 0 2244 79 3 7 chr11 15234375 15234665 -135548888 - AluSg SINE Alu -16 294 6 1404 70 65 0 chr11 15235530 15235731 -135547822 - L1PA13 LINE L1 -11 6152 5939 1294 151 9 18 chr11 15236317 15236536 -135547017 - AluJb SINE Alu -12 300 84 684 292 178 8 chr11 15236756 15237180 -135546373 - L2 LINE L2 -238 3075 2581 1698 180 39 0 chr11 15237242 15237525 -135546028 + AluJo SINE Alu 1 294 -18 318 50 0 0 chr11 15237525 15237565 -135545988 + (TA)n Simple_repeat Simple_repeat 2 41 0 465 275 168 64 chr11 15238054 15238400 -135545153 - MLT1J LTR MaLR -45 466 85 24 0 0 0 chr11 15240414 15240438 -135543115 + AT_rich Low_complexity Low_complexity 1 24 0 2611 203 114 43 chr11 15240881 15241708 -135541845 - L1ME2 LINE L1 -6 6158 5274 3015 116 59 15 chr11 15241711 15242187 -135541366 - MER7C DNA MER2_type 0 602 106 1040 220 160 18 chr11 15242213 15242600 -135540953 - L1ME2 LINE L1 -876 5270 4829 2931 254 56 38 chr11 15243019 15243439 -135540114 - L1ME1 LINE L1 0 6166 5755 1760 159 11 14 chr11 15243439 15243722 -135539831 - AluSx SINE Alu -30 282 1 2931 254 56 38 chr11 15243722 15244814 -135538739 - L1ME1 LINE L1 -411 5755 4549 1264 84 0 0 chr11 15244817 15244983 -135538570 + MER51B LTR ERV1 212 377 0 870 154 135 0 chr11 15244983 15245149 -135538404 + MER51B-int LTR ERV1 1 165 -4715 1102 169 0 0 chr11 15245150 15245334 -135538219 + MER51B-int LTR ERV1 417 600 -7216 4703 149 18 31 chr11 15245433 15246281 -135537272 + MER51B-int LTR ERV1 608 1444 -6372 599 223 1 0 chr11 15246292 15246440 -135537113 - L1ME1 LINE L1 -1587 4559 4411 493 126 0 58 chr11 15246440 15246527 -135537026 - Tigger5 DNA MER2_type 0 2323 2242 427 203 0 0 chr11 15246668 15246742 -135536811 + Tigger5 DNA MER2_type 2247 2320 -3 424 188 0 71 chr11 15246742 15246771 -135536782 - Tigger5 DNA MER2_type -288 78 48 1443 133 161 41 chr11 15246771 15247088 -135536465 + THE1A LTR MaLR 1 355 0 424 188 0 71 chr11 15247088 15247142 -135536411 - Tigger5 DNA MER2_type -318 48 1 4678 212 49 60 chr11 15247145 15247323 -135536230 - L1ME1 LINE L1 -1741 4405 4227 2582 129 20 41 chr11 15247323 15247766 -135535787 - Tigger2a DNA MER2_type 0 434 1 4678 212 49 60 chr11 15247766 15248437 -135535116 - L1ME1 LINE L1 -1919 4227 3550 2383 80 0 7 chr11 15248437 15248736 -135534817 - AluSp SINE Alu -16 297 1 4678 212 49 60 chr11 15248736 15249548 -135534005 - L1ME1 LINE L1 -2596 3550 2761 983 96 15 0 chr11 15249676 15249811 -135533742 - MER11A LTR ERVK 0 1266 1130 3404 94 16 2 chr11 15249911 15250401 -135533152 - L1P4 LINE L1 -345 5823 5327 3849 209 78 96 chr11 15250401 15251010 -135532543 - L1ME LINE L1 -544 5618 5000 1501 199 7 10 chr11 15251010 15251301 -135532252 - AluJo SINE Alu -22 290 1 3849 209 78 96 chr11 15251301 15252744 -135530809 - L1ME LINE L1 -1162 5000 3591 208 331 99 8 chr11 15252832 15252953 -135530600 - MIR SINE MIR -108 154 23 657 278 124 22 chr11 15255493 15255856 -135527697 - HAL1 LINE L1 -14 2493 2094 826 284 161 14 chr11 15255868 15256453 -135527100 - HAL1 LINE L1 -979 1528 858 619 253 12 19 chr11 15256502 15256663 -135526890 - LTR16C LTR ERVL -56 435 276 591 174 143 31 chr11 15256663 15256824 -135526729 - MER3 DNA MER1_type 0 209 31 227 71 0 0 chr11 15256835 15256863 -135526690 - MER3 DNA MER1_type -154 55 28 441 317 66 38 chr11 15257041 15257360 -135526193 - HAL1 LINE L1 -2003 504 177 593 253 23 36 chr11 15257585 15257806 -135525747 - L1M4 LINE L1 -2378 3768 3551 183 42 0 0 chr11 15257830 15257854 -135525699 + (TG)n Simple_repeat Simple_repeat 1 24 0 318 266 55 0 chr11 15257905 15258014 -135525539 - HAL1 LINE L1 -810 1697 1583 295 211 22 56 chr11 15258323 15258413 -135525140 - MER5B DNA MER1_type -86 92 6 1665 213 153 46 chr11 15258422 15259123 -135524430 + L1ME1 LINE L1 4566 5341 -805 1907 185 127 37 chr11 15259167 15259686 -135523867 + L1ME1 LINE L1 5563 6128 -38 218 215 0 15 chr11 15260169 15260234 -135523319 + CT-rich Low_complexity Low_complexity 3 66 0 22 0 0 0 chr11 15260308 15260330 -135523223 + AT_rich Low_complexity Low_complexity 1 22 0 452 194 284 0 chr11 15260471 15260605 -135522948 + MIR SINE MIR 81 252 -10 591 328 73 49 chr11 15260999 15261466 -135522087 - L2 LINE L2 -21 3292 2815 2407 155 41 9 chr11 15262075 15262494 -135521059 + MSTB1 LTR MaLR 1 432 0 21 36 0 0 chr11 15262506 15262534 -135521019 + AT_rich Low_complexity Low_complexity 1 28 0 1050 246 31 67 chr11 15262583 15263002 -135520551 + L1MC4 LINE L1 7638 8041 -1 423 194 10 39 chr11 15263377 15263480 -135520073 + HsTC2 DNA Tc2 1 100 -1798 405 308 35 50 chr11 15263567 15263765 -135519788 - L1MEd LINE L1 -5509 610 416 306 321 38 6 chr11 15264206 15264365 -135519188 + MIR SINE MIR 99 262 0 403 291 79 65 chr11 15264458 15264750 -135518803 + MLT1K LTR MaLR 126 421 -167 314 280 21 0 chr11 15264870 15264963 -135518590 + MLT1K LTR MaLR 492 586 -2 2387 131 81 0 chr11 15265431 15265827 -135517726 - MSTA LTR MaLR 0 428 1 1863 174 3 0 chr11 15266140 15266445 -135517108 - AluJo SINE Alu -2 310 5 2119 127 3 3 chr11 15266531 15266839 -135516714 - AluSx SINE Alu -4 308 1 777 229 203 62 chr11 15267343 15267760 -135515793 + MLT2B1 LTR ERVL 1 488 -32 342 45 0 0 chr11 15267760 15267804 -135515749 + (CA)n Simple_repeat Simple_repeat 2 45 0 777 229 203 62 chr11 15267804 15267840 -135515713 + MLT2B1 LTR ERVL 488 518 -2 1067 163 6 0 chr11 15268456 15268628 -135514925 + AluJb SINE Alu 134 306 -6 869 215 0 0 chr11 15268749 15268912 -135514641 + MER3 DNA MER1_type 47 209 0 24 53 0 0 chr11 15268989 15269027 -135514526 + AT_rich Low_complexity Low_complexity 1 38 0 5356 30 5 0 chr11 15269244 15269886 -135513667 - L1P LINE L1 -1413 4733 4089 693 46 0 0 chr11 15269884 15269971 -135513582 + L1PA4 LINE L1 5701 5787 -368 * 43121 31 21 1 chr11 15269973 15276003 -135507550 + L1PA2 LINE L1 3 6155 0 3044 34 16 3 chr11 15276004 15276385 -135507168 + L1PA4 LINE L1 5770 6155 0 1280 202 36 4 chr11 15276680 15276927 -135506626 + MLT1F1 LTR MaLR 308 562 -5 290 322 0 0 chr11 15277139 15277226 -135506327 - MIR SINE MIR 0 262 176 253 288 76 30 chr11 15277367 15277499 -135506054 - L2 LINE L2 -55 3258 3121 1826 161 0 26 chr11 15277537 15277842 -135505711 + AluJo SINE Alu 3 299 -13 797 348 98 33 chr11 15277876 15278474 -135505079 - L2 LINE L2 -400 2914 2250 1141 142 42 58 chr11 15278474 15278714 -135504839 + MER46A DNA MER2_type 1 236 0 797 348 98 33 chr11 15278714 15278911 -135504642 - L2 LINE L2 -1064 2250 2067 557 308 25 0 chr11 15278926 15279085 -135504468 - L2 LINE L2 0 3313 3151 299 229 37 83 chr11 15279120 15279229 -135504324 - L2 LINE L2 -902 2412 2309 863 91 40 17 chr11 15279307 15279482 -135504071 + CT-rich Low_complexity Low_complexity 2 180 0 360 293 0 20 chr11 15279483 15279582 -135503971 + C-rich Low_complexity Low_complexity 5 101 0 7308 24 0 0 chr11 15280021 15280868 -135502685 - L1PA3 LINE L1 -3 6152 5306 1972 143 3 25 chr11 15280973 15281287 -135502266 - MER1B DNA MER1_type -16 323 17 344 216 62 0 chr11 15281287 15281384 -135502169 - L1MDb LINE L1 -4527 1879 1777 * 33126 63 15 4 chr11 15281382 15286598 -135496955 - L1PA5 LINE L1 -1 6153 881 1094 220 43 16 chr11 15286699 15287022 -135496531 + L1MDa LINE L1 2213 2544 -3996 347 370 68 22 chr11 15287358 15287636 -135495917 + L1ME LINE L1 5448 5738 -383 594 266 98 29 chr11 15288184 15288428 -135495125 - MIR SINE MIR 0 262 2 23 0 0 0 chr11 15288663 15288686 -135494867 + AT_rich Low_complexity Low_complexity 1 23 0 256 315 56 0 chr11 15289668 15289757 -135493796 - MIR3 SINE MIR -6 202 109 22 56 0 0 chr11 15290211 15290247 -135493306 + AT_rich Low_complexity Low_complexity 1 36 0 953 191 0 27 chr11 15293238 15293426 -135490127 + MER3 DNA MER1_type 1 183 -26 1432 195 104 22 chr11 15294062 15294380 -135489173 + MER2 DNA MER2_type 1 344 -1 5429 125 2 18 chr11 15295146 15295979 -135487574 - L1P LINE L1 -5325 821 2 3329 220 69 22 chr11 15295974 15296972 -135486581 - L1MDb LINE L1 -4616 1790 590 * 1020 16 0 8 chr11 15296972 15297122 -135486431 - L1PA2 LINE L1 0 6155 6032 3329 220 69 22 chr11 15297122 15297698 -135485855 - L1MDb LINE L1 -5816 590 43 2293 94 3 0 chr11 15297810 15298107 -135485446 + AluSp SINE Alu 1 298 -15 188 346 0 0 chr11 15298177 15298229 -135485324 - L2 LINE L2 -226 3046 2995 891 264 86 35 chr11 15298495 15298908 -135484645 - L2 LINE L2 -163 3150 2706 249 220 17 0 chr11 15299140 15299199 -135484354 + MER58 DNA MER1_type 2361 2420 0 214 266 63 13 chr11 15299292 15299371 -135484182 - MIR SINE MIR -89 173 91 2081 266 42 39 chr11 15299913 15300831 -135482722 + L1M4 LINE L1 3392 4312 -1834 312 211 105 60 chr11 15300831 15300964 -135482589 + L1ME4a LINE L1 5979 6117 -4 877 197 124 32 chr11 15300972 15301221 -135482332 + L1ME3A LINE L1 5894 6165 -5 28 0 0 0 chr11 15301465 15301493 -135482060 + AT_rich Low_complexity Low_complexity 1 28 0 637 259 49 0 chr11 15302615 15302777 -135480776 - MER58C DNA MER1_type -42 173 4 616 339 184 10 chr11 15303175 15303567 -135479986 - L3 LINE CR1 -656 921 462 798 216 10 41 chr11 15303777 15303971 -135479582 + MER106A DNA MER1_type 2 189 -47 326 114 51 0 chr11 15303971 15304050 -135479503 + (TA)n Simple_repeat Simple_repeat 2 84 0 378 138 0 0 chr11 15304800 15304865 -135478688 + MER5C DNA MER1_type 60 124 -200 302 236 90 22 chr11 15304874 15304963 -135478590 + MER5C DNA MER1_type 225 319 -5 711 257 59 13 chr11 15304964 15305201 -135478352 + L1ME3A LINE L1 5681 5928 -242 467 307 60 14 chr11 15305442 15305660 -135477893 - L2 LINE L2 -1478 1836 1609 30 45 0 0 chr11 15305736 15305780 -135477773 + AT_rich Low_complexity Low_complexity 1 44 0 51 31 0 0 chr11 15306971 15307036 -135476517 + AT_rich Low_complexity Low_complexity 1 65 0 480 319 125 14 chr11 15308060 15308276 -135475277 - MIR SINE MIR -18 244 5 224 261 226 0 chr11 15308291 15308406 -135475147 - MIR SINE MIR -12 250 110 888 333 40 27 chr11 15308429 15308907 -135474646 + LTR33 LTR ERVL 38 521 0 270 238 36 48 chr11 15308928 15309012 -135474541 - MIR SINE MIR -173 89 7 4164 251 106 13 chr11 15309088 15310388 -135473165 + L2 LINE L2 1446 2923 -391 498 196 152 9 chr11 15310572 15310684 -135472869 + FLAM_A SINE Alu 1 128 -5 814 160 0 0 chr11 15310695 15310814 -135472739 - FLAM_C SINE Alu -24 119 1 1338 121 27 0 chr11 15311821 15312044 -135471509 + L1MA4 LINE L1 6053 6281 -19 312 274 69 39 chr11 15312403 15312505 -135471048 + L2 LINE L2 3203 3307 -6 454 312 219 5 chr11 15312575 15312790 -135470763 - MIR SINE MIR 0 262 2 2259 104 0 0 chr11 15312992 15313290 -135470263 + AluSc SINE Alu 1 298 -11 14884 29 0 0 chr11 15313467 15316036 -135467517 + L1PA2 LINE L1 3550 6154 -1 926 268 54 12 chr11 15316159 15316578 -135466975 + LTR33 LTR ERVL 6 521 0 4583 180 58 3 chr11 15316976 15317880 -135465673 - Cheshire DNA MER1_type -5 2415 1463 790 148 0 22 chr11 15318080 15318215 -135465338 - FLAM_A SINE Alu -1 132 1 212 225 100 38 chr11 15318356 15318436 -135465117 + MIR SINE MIR 129 213 -49 200 294 15 29 chr11 15319477 15319545 -135464008 + L2 LINE L2 3238 3304 -9 636 315 74 61 chr11 15320819 15321210 -135462343 + LTR16C LTR ERVL 96 491 0 213 292 83 50 chr11 15321275 15321395 -135462158 + L3 LINE CR1 317 440 -1137 24 67 0 0 chr11 15321536 15321581 -135461972 + AT_rich Low_complexity Low_complexity 1 45 0 276 282 71 0 chr11 15321648 15321733 -135461820 - MER5B DNA MER1_type -83 95 5 215 285 127 82 chr11 15321847 15322005 -135461548 + L3 LINE CR1 944 1108 -469 861 208 104 74 chr11 15322013 15322446 -135461107 - Charlie4a DNA MER1_type 0 508 63 1138 236 40 53 chr11 15322452 15322844 -135460709 + MLT2B1 LTR ERVL 1 428 -92 240 135 22 34 chr11 15322846 15322935 -135460618 + (TA)n Simple_repeat Simple_repeat 2 89 0 293 77 0 0 chr11 15322968 15323007 -135460546 + MLT2B1 LTR ERVL 475 513 -2 295 222 16 127 chr11 15323100 15323226 -135460327 + L3 LINE CR1 1171 1282 -295 241 333 76 23 chr11 15323335 15323467 -135460086 + L3 LINE CR1 1417 1555 -22 2000 150 0 3 chr11 15323544 15323857 -135459696 + AluSx SINE Alu 1 312 0 25 51 0 0 chr11 15324971 15325010 -135458543 + AT_rich Low_complexity Low_complexity 1 39 0 2298 164 34 17 chr11 15325431 15325840 -135457713 + MSTB LTR MaLR 1 416 -10 423 276 0 19 chr11 15326199 15326304 -135457249 - LTR16A LTR ERVL -201 249 147 1883 112 35 0 chr11 15326316 15326607 -135456946 - AluSx SINE Alu 0 315 16 345 291 0 50 chr11 15326611 15326752 -135456801 - LTR16A LTR ERVL -296 154 21 1008 109 0 0 chr11 15327614 15327752 -135455801 + FLAM_C SINE Alu 6 143 0 1879 214 21 34 chr11 15328176 15328705 -135454848 + L1M4 LINE L1 4383 4904 -1242 31721 107 13 51 chr11 15328718 15335115 -135448438 + L1PA3 LINE L1 12 6153 -2 279 98 0 0 chr11 15335111 15335152 -135448401 + L1MB5 LINE L1 6128 6168 -6 * 2260 86 0 17 chr11 15335236 15335538 -135448015 + AluY SINE Alu 1 297 -14 678 310 32 0 chr11 15335572 15335759 -135447794 - MIR SINE MIR -4 258 66 199 330 64 21 chr11 15335765 15335859 -135447694 - L3 LINE CR1 -1210 367 270 415 399 66 7 chr11 15335864 15336137 -135447416 - L3 LINE CR1 -1258 319 31 342 0 0 0 chr11 15336737 15336775 -135446778 + (CA)n Simple_repeat Simple_repeat 1 38 0 755 224 83 26 chr11 15336975 15337167 -135446386 + MER3 DNA MER1_type 1 203 -6 266 258 96 48 chr11 15337702 15337869 -135445684 + L1MC4 LINE L1 7601 7775 -267 241 291 48 0 chr11 15338081 15338184 -135445369 + L1M4 LINE L1 3807 3914 -2232 1743 176 7 3 chr11 15338363 15338659 -135444894 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr11 15339392 15339414 -135444139 + AT_rich Low_complexity Low_complexity 1 22 0 1096 203 111 9 chr11 15339875 15340092 -135443461 - MER8 DNA MER2_type 0 239 1 1215 294 32 53 chr11 15340481 15340974 -135442579 + L2 LINE L2 2831 3313 0 2472 73 0 0 chr11 15341176 15341478 -135442075 + AluY SINE Alu 1 302 -9 282 192 0 0 chr11 15341798 15341850 -135441703 + MIR SINE MIR 98 149 -113 198 318 63 0 chr11 15341883 15341946 -135441607 - MIR SINE MIR -188 74 8 21 0 0 0 chr11 15342206 15342227 -135441326 + AT_rich Low_complexity Low_complexity 1 21 0 923 270 83 99 chr11 15342315 15342870 -135440683 + LTR67 LTR ERVL 2 547 -10 458 276 125 15 chr11 15344066 15344280 -135439273 + MIR SINE MIR 19 256 -6 524 253 137 17 chr11 15345248 15345481 -135438072 + MIR SINE MIR 1 261 -1 1129 297 148 10 chr11 15345802 15346314 -135437239 + L2 LINE L2 1707 2289 -1025 * 1290 271 110 35 chr11 15346313 15347105 -135436448 - L2 LINE L2 0 3313 2461 513 166 7 40 chr11 15347106 15347257 -135436296 + G-rich Low_complexity Low_complexity 5 150 0 1718 137 147 0 chr11 15347877 15348191 -135435362 - MER46B DNA MER2_type 0 236 2 3972 176 40 71 chr11 15348840 15348884 -135434669 - MER21B LTR ERV1 -53 810 766 291 54 0 0 chr11 15348884 15348921 -135434632 + (CAAG)n Simple_repeat Simple_repeat 3 39 0 3972 176 40 71 chr11 15348921 15348962 -135434591 - MER21B LTR ERV1 -97 766 725 2347 104 10 0 chr11 15348962 15349271 -135434282 - AluSx SINE Alu 0 312 1 3972 176 40 71 chr11 15349271 15350020 -135433533 - MER21B LTR ERV1 -138 725 1 210 167 0 0 chr11 15350382 15350418 -135433135 + T-rich Low_complexity Low_complexity 1 36 0 6838 59 19 6 chr11 15350541 15351902 -135431651 - L1PA7 LINE L1 -8 6146 4771 451 83 0 56 chr11 15351902 15351974 -135431579 + L1P3 LINE L1 1102 1169 -5292 * 27421 114 14 73 chr11 15351968 15354896 -135428657 - L1PA7 LINE L1 -1374 4772 2266 1800 98 0 0 chr11 15354896 15355131 -135428422 + AluSg SINE Alu 55 289 -21 27421 114 14 73 chr11 15355131 15357264 -135426289 - L1PA7 LINE L1 -3880 2266 9 2852 141 134 12 chr11 15357362 15357921 -135425632 - LTR24C LTR ERV1 -8 627 1 763 221 38 0 chr11 15358076 15358234 -135425319 + MER5A DNA MER1_type 1 164 -25 988 231 46 9 chr11 15358248 15358464 -135425089 + MER58A DNA MER1_type 1 224 0 269 295 0 26 chr11 15358871 15358949 -135424604 - L2 LINE L2 -4 3268 3193 400 273 49 5 chr11 15359403 15359633 -135423920 + L1ME LINE L1 1305 1834 -4811 552 293 48 22 chr11 15359734 15359847 -135423706 + L1ME LINE L1 1807 1916 -4860 683 177 57 0 chr11 15359847 15359988 -135423565 + L1MA9 LINE L1 6164 6312 0 552 293 48 22 chr11 15359988 15360200 -135423353 + L1ME LINE L1 1916 2249 -4527 6300 63 3 22 chr11 15360211 15360567 -135422986 + L1PA7 LINE L1 5315 5676 -478 2134 76 41 28 chr11 15360567 15360857 -135422696 + AluY SINE Alu 1 294 -17 6300 63 3 22 chr11 15360857 15360974 -135422579 + L1PA7 LINE L1 5676 5794 -360 2817 22 0 0 chr11 15360974 15361285 -135422268 + AluYa5 SINE Alu 1 311 0 6300 63 3 22 chr11 15361285 15361666 -135421887 + L1PA7 LINE L1 5794 6154 0 347 303 68 22 chr11 15361681 15362051 -135421502 + L1ME LINE L1 2306 2692 -4133 293 129 81 16 chr11 15362064 15362126 -135421427 + L1ME LINE L1 998 1063 -5479 2163 102 0 45 chr11 15362161 15362475 -135421078 + AluSx SINE Alu 1 300 -12 630 236 42 51 chr11 15362581 15362894 -135420659 + L1MB7 LINE L1 870 1179 -5363 2100 223 108 11 chr11 15362921 15363548 -135420005 + L1MB7 LINE L1 4600 5287 -1357 1925 179 31 5 chr11 15363566 15363957 -135419596 + L1MB7 LINE L1 6074 6474 -208 1792 209 6 6 chr11 15363957 15364297 -135419256 + MLT1A1 LTR MaLR 1 340 -25 9187 23 25 0 chr11 15364563 15366441 -135417112 - L1PA3 LINE L1 0 6155 4251 907 188 28 24 chr11 15366472 15366685 -135416868 + L1MB7 LINE L1 6469 6682 0 715 200 186 27 chr11 15366691 15366986 -135416567 + L1ME LINE L1 3279 3620 -3024 494 264 7 0 chr11 15367012 15367152 -135416401 + L1ME LINE L1 3927 4067 -2577 2162 129 21 3 chr11 15367236 15367570 -135415983 + MLT1A1 LTR MaLR 26 365 0 1244 189 44 83 chr11 15367570 15368110 -135415443 - MLT1D LTR MaLR -18 487 1 1873 243 76 34 chr11 15368111 15368955 -135414598 + L1ME LINE L1 4075 4953 -1691 2087 112 0 32 chr11 15369075 15369388 -135414165 + AluSx SINE Alu 1 303 -9 1006 156 13 0 chr11 15369388 15369542 -135414011 + AluSg/x SINE Alu 137 292 -20 352 259 24 9 chr11 15369587 15369638 -135413915 + L1MB8 LINE L1 5254 5303 -896 1300 260 167 23 chr11 15369638 15370154 -135413399 - MLT1E LTR MaLR -2 591 2 352 259 24 9 chr11 15370154 15370315 -135413238 + L1MB8 LINE L1 5303 5469 -730 294 29 0 0 chr11 15370336 15370371 -135413182 + (CA)n Simple_repeat Simple_repeat 2 36 0 1667 178 58 41 chr11 15370376 15370718 -135412835 - MLT2D LTR ERVL -48 366 19 309 238 123 16 chr11 15370993 15371115 -135412438 + L2 LINE L2 3179 3313 0 5073 56 2 0 chr11 15371218 15371846 -135411707 + L1PA5 LINE L1 5526 6154 0 1548 178 56 7 chr11 15371865 15372151 -135411402 + AluJb SINE Alu 1 300 -12 28 61 0 0 chr11 15372151 15372200 -135411353 + AT_rich Low_complexity Low_complexity 1 49 0 490 206 235 18 chr11 15372841 15373011 -135410542 - MER6B DNA MER2_type -3 207 1 22 0 0 0 chr11 15373137 15373159 -135410394 + AT_rich Low_complexity Low_complexity 1 22 0 303 299 17 51 chr11 15374067 15374184 -135409369 + L1ME LINE L1 14 126 -5944 325 148 0 0 chr11 15374469 15374523 -135409030 - L1MB7 LINE L1 -31 6153 6100 484 62 0 0 chr11 15374566 15374631 -135408922 + L1M4 LINE L1 3573 3637 -2509 1269 196 57 21 chr11 15374644 15374975 -135408578 + L1MB8 LINE L1 5781 6123 -55 1526 187 66 32 chr11 15374976 15375324 -135408229 + MLT1A1 LTR MaLR 6 365 0 582 246 229 34 chr11 15375378 15375838 -135407715 - MLT1G1 LTR MaLR -52 515 16 234 273 65 0 chr11 15376151 15376228 -135407325 - MIR SINE MIR -59 203 122 1682 165 37 30 chr11 15376303 15376600 -135406953 - AluJo SINE Alu -13 299 1 19308 185 32 21 chr11 15376698 15383721 -135399832 + L1PA13 LINE L1 2 7601 0 2254 118 58 3 chr11 15383884 15384248 -135399305 + L1PA13 LINE L1 5769 6152 -11 876 255 150 3 chr11 15384259 15384585 -135398968 - L1ME3A LINE L1 -114 6056 5683 29 28 0 0 chr11 15385470 15385506 -135398047 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr11 15386302 15386339 -135397214 + AT_rich Low_complexity Low_complexity 1 37 0 2016 131 0 10 chr11 15387344 15387650 -135395903 - AluSq SINE Alu -10 303 1 358 257 53 66 chr11 15388367 15388519 -135395034 + MIR SINE MIR 110 259 -3 269 341 101 14 chr11 15388709 15388847 -135394706 - MIR SINE MIR -111 151 2 256 330 23 0 chr11 15388882 15388970 -135394583 - MIR SINE MIR -14 248 159 185 167 28 0 chr11 15389609 15389645 -135393908 + L2 LINE L2 3174 3210 -62 25 0 0 0 chr11 15389828 15389853 -135393700 + AT_rich Low_complexity Low_complexity 1 25 0 1432 179 16 20 chr11 15390074 15390325 -135393228 + AluJo SINE Alu 1 250 -62 24 0 0 0 chr11 15390716 15390740 -135392813 + AT_rich Low_complexity Low_complexity 1 24 0 228 267 33 17 chr11 15390746 15390866 -135392687 - L1MEc LINE L1 -4946 1450 1329 588 159 56 0 chr11 15390870 15390977 -135392576 - MLT1D-int LTR MaLR -1256 115 3 1254 181 78 16 chr11 15390980 15391196 -135392357 - MLT1D LTR MaLR 0 505 271 1989 140 3 16 chr11 15391196 15391511 -135392042 - AluSx SINE Alu -1 311 1 1254 181 78 16 chr11 15391511 15391537 -135392016 - MLT1D LTR MaLR -234 271 248 1815 218 21 19 chr11 15391671 15392102 -135391451 - MLT1-int LTR MaLR -768 603 172 2251 67 0 3 chr11 15392359 15392676 -135390877 - AluY SINE Alu 0 316 1 397 368 30 13 chr11 15392676 15392910 -135390643 + ERVL LTR ERVL 436 673 -5091 275 372 31 0 chr11 15392942 15393071 -135390482 + ERVL LTR ERVL 797 929 -4835 299 262 12 0 chr11 15393106 15393190 -135390363 + ERVL LTR ERVL 871 955 -4530 258 301 0 21 chr11 15393198 15393291 -135390262 + ERVL LTR ERVL 1121 1211 -4553 2453 294 50 19 chr11 15393485 15394376 -135389177 + ERVL LTR ERVL 2000 2972 -2565 1272 307 72 30 chr11 15394760 15395356 -135388197 + ERVL LTR ERVL 3378 3998 -1656 1945 213 6 19 chr11 15395356 15395715 -135387838 + MLT2D LTR ERVL 1 449 -71 258 32 0 0 chr11 15395715 15395746 -135387807 + (TC)n Simple_repeat Simple_repeat 2 32 0 1945 213 6 19 chr11 15395746 15395818 -135387735 + MLT2D LTR ERVL 449 520 0 965 126 132 0 chr11 15395960 15396119 -135387434 - MSTA LTR MaLR 0 428 249 739 106 0 0 chr11 15396123 15396227 -135387326 - AluJb SINE Alu -208 104 1 938 102 57 6 chr11 15396227 15396384 -135387169 - L1 LINE L1 -1374 4772 4608 854 211 0 15 chr11 15396379 15396578 -135386975 - L1 LINE L1 -1788 4358 4163 * 24 0 0 0 chr11 15396803 15396827 -135386726 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 15396961 15396984 -135386569 + AT_rich Low_complexity Low_complexity 1 23 0 662 211 24 42 chr11 15396991 15397157 -135386396 + FAM SINE Alu 1 163 -12 39487 37 1 2 chr11 15398749 15403534 -135380019 + L1P LINE L1 7 4790 -1356 1887 96 43 28 chr11 15403634 15403916 -135379637 - AluY SINE Alu -25 286 1 234 0 0 0 chr11 15404303 15404329 -135379224 + (TG)n Simple_repeat Simple_repeat 2 27 0 252 333 64 50 chr11 15404603 15404744 -135378809 + MIR3 SINE MIR 8 150 -58 2082 111 7 0 chr11 15404842 15405148 -135378405 - AluSx SINE Alu 0 308 1 764 279 181 29 chr11 15405452 15405573 -135377980 + L2 LINE L2 2616 2717 -596 789 176 8 0 chr11 15405573 15405704 -135377849 + FLAM_C SINE Alu 2 133 0 764 279 181 29 chr11 15405704 15406193 -135377360 + L2 LINE L2 2717 3306 -7 2351 85 3 0 chr11 15407312 15407606 -135375947 - AluSc SINE Alu -12 297 3 689 234 78 63 chr11 15407760 15408274 -135375279 + HAL1 LINE L1 975 1567 -940 441 243 46 59 chr11 15408277 15408429 -135375124 - L2 LINE L2 0 3313 3164 342 151 0 0 chr11 15408441 15408514 -135375039 + GA-rich Low_complexity Low_complexity 2 74 0 465 286 30 26 chr11 15408562 15408762 -135374791 + L1MEc LINE L1 1568 1824 -752 1647 178 41 36 chr11 15408780 15409145 -135374408 + THE1C LTR MaLR 1 367 -8 2237 91 3 3 chr11 15409366 15409663 -135373890 + AluY SINE Alu 1 297 -14 277 191 12 95 chr11 15411598 15411682 -135371871 + MIR SINE MIR 65 141 -121 23 20 0 61 chr11 15412160 15412209 -135371344 + AT_rich Low_complexity Low_complexity 1 46 0 350 131 16 33 chr11 15412540 15412601 -135370952 - L2 LINE L2 0 3313 3254 21 57 0 0 chr11 15413299 15413334 -135370219 + AT_rich Low_complexity Low_complexity 1 35 0 305 291 60 26 chr11 15413352 15413469 -135370084 - MIR SINE MIR -60 202 82 204 179 0 0 chr11 15413696 15413735 -135369818 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 4098 132 48 3 chr11 15414413 15415093 -135368460 - MER50 LTR ERV1 -23 711 1 247 226 0 38 chr11 15415093 15415146 -135368407 + L3 LINE CR1 1520 1570 -7 2299 94 0 0 chr11 15415378 15415665 -135367888 - AluSg SINE Alu -23 287 1 3350 65 10 0 chr11 15415681 15416279 -135367274 - L1PA7 LINE L1 -1 6153 5359 10719 93 9 25 chr11 15416279 15417996 -135365557 + L1P LINE L1 1669 3357 -2789 30 45 0 0 chr11 15418410 15418454 -135365099 + AT_rich Low_complexity Low_complexity 1 44 0 1064 212 62 21 chr11 15418741 15418982 -135364571 + MIR SINE MIR 11 261 -1 349 248 139 15 chr11 15419558 15419695 -135363858 - MIR SINE MIR -34 228 75 1097 155 130 0 chr11 15420590 15420797 -135362756 + MER46A DNA MER2_type 2 235 -1 191 273 0 0 chr11 15420898 15420942 -135362611 - L2 LINE L2 -8 3264 3221 23 54 0 0 chr11 15421558 15421595 -135361958 + AT_rich Low_complexity Low_complexity 1 37 0 1413 80 11 5 chr11 15421639 15421827 -135361726 + AluY SINE Alu 106 294 -17 204 265 44 116 chr11 15421914 15422095 -135361458 + L2 LINE L2 3062 3229 -84 26 30 0 0 chr11 15422106 15422139 -135361414 + AT_rich Low_complexity Low_complexity 1 33 0 257 232 188 0 chr11 15422143 15422212 -135361341 + L2 LINE L2 3232 3313 0 361 314 97 33 chr11 15425116 15425437 -135358116 - L2 LINE L2 -229 3043 2692 1099 172 4 147 chr11 15425449 15425728 -135357825 + MER8 DNA MER2_type 1 239 0 1376 143 174 31 chr11 15425747 15426161 -135357392 + LTR54B LTR ERV1 24 496 -2 394 307 124 51 chr11 15426269 15426526 -135357027 - L2 LINE L2 -826 2488 2213 365 176 24 24 chr11 15426541 15426626 -135356927 + LTR45 LTR ERV1 441 525 0 679 109 10 0 chr11 15426699 15426800 -135356753 + AluJ/FLAM SINE Alu 1 102 -210 508 301 92 58 chr11 15426819 15427232 -135356321 - L1MEc LINE L1 -3623 2592 2202 331 193 126 22 chr11 15427529 15427664 -135355889 - HAL1b LINE L1 -517 831 683 316 281 70 9 chr11 15428555 15428669 -135354884 + MIR3 SINE MIR 82 202 -6 651 174 99 0 chr11 15429028 15429149 -135354404 + FLAM_C SINE Alu 1 133 0 459 223 29 0 chr11 15429937 15430040 -135353513 - MER94 DNA DNA -2 132 27 24 0 0 0 chr11 15430235 15430259 -135353294 + AT_rich Low_complexity Low_complexity 1 24 0 182 281 258 22 chr11 15431529 15431618 -135351935 + MIR SINE MIR 19 128 -80 222 271 278 8 chr11 15432653 15432786 -135350767 + MIR SINE MIR 44 212 -50 21 36 0 0 chr11 15433565 15433593 -135349960 + AT_rich Low_complexity Low_complexity 1 28 0 2062 156 30 30 chr11 15434319 15434717 -135348836 + MSTB LTR MaLR 29 426 0 336 281 37 0 chr11 15434828 15434910 -135348643 + L2 LINE L2 1234 1318 -1996 847 297 238 3 chr11 15434922 15435245 -135348308 - L2 LINE L2 -4 3309 2911 276 312 161 0 chr11 15435308 15435401 -135348152 + MER91A DNA MER1_type 89 196 0 10752 25 6 3 chr11 15435448 15437490 -135346063 + L1PA3 LINE L1 4112 6155 0 376 316 64 15 chr11 15438938 15439130 -135344423 + MIR3 SINE MIR 6 208 0 951 273 38 35 chr11 15440452 15440771 -135342782 + L2 LINE L2 2365 2684 -630 * 1200 268 68 16 chr11 15440767 15441147 -135342406 + L2 LINE L2 2914 3313 0 186 336 76 42 chr11 15441484 15441603 -135341950 + L2 LINE L2 3150 3272 0 2307 73 3 3 chr11 15442640 15442940 -135340613 + AluY SINE Alu 1 300 -11 2590 42 0 10 chr11 15443328 15443640 -135339913 - AluY SINE Alu 0 311 3 214 286 113 15 chr11 15443974 15444107 -135339446 + MIR SINE MIR 95 240 -22 692 237 130 56 chr11 15445900 15446188 -135337365 - L2 LINE L2 0 3313 2993 1958 194 45 47 chr11 15446188 15446694 -135336859 - MLT1D LTR MaLR 0 505 1 692 237 130 56 chr11 15446694 15446760 -135336793 - L2 LINE L2 -320 2993 2933 968 188 41 5 chr11 15448085 15448303 -135335250 - MER96B DNA MER1_type? -183 234 9 213 167 0 42 chr11 15448700 15448748 -135334805 + (TGG)n Simple_repeat Simple_repeat 1 46 0 294 301 98 14 chr11 15449006 15449149 -135334404 - MIR3 SINE MIR -45 163 9 * 474 236 95 47 chr11 15449136 15449284 -135334269 - L2 LINE L2 -1 3312 3158 484 290 89 30 chr11 15451327 15451496 -135332057 - MIR3 SINE MIR -11 197 19 183 156 0 0 chr11 15451496 15451528 -135332025 + T-rich Low_complexity Low_complexity 1 32 0 2233 233 19 15 chr11 15451634 15452163 -135331390 + LTR31 LTR ERV1 74 604 -15 2371 84 3 3 chr11 15453654 15453963 -135329590 - AluSq SINE Alu -4 309 1 1370 227 15 61 chr11 15454148 15454610 -135328943 + L1ME2 LINE L1 5698 6138 -26 306 233 48 107 chr11 15454657 15454863 -135328690 + L1MC4 LINE L1 7821 8014 -28 25 0 0 0 chr11 15454934 15454959 -135328594 + AT_rich Low_complexity Low_complexity 1 25 0 459 323 65 0 chr11 15455058 15455259 -135328294 + L1ME LINE L1 5559 5772 -349 875 299 56 36 chr11 15455561 15455744 -135327809 + LTR16A LTR ERVL 17 195 -255 940 236 0 6 chr11 15455744 15455922 -135327631 - MER45A DNA AcHobo 0 178 2 875 299 56 36 chr11 15455922 15456152 -135327401 + LTR16A LTR ERVL 195 438 -12 2286 178 28 8 chr11 15456308 15456808 -135326745 + L1MB4 LINE L1 5634 6143 -37 911 198 61 36 chr11 15456818 15457065 -135326488 + L1MCc LINE L1 19 271 -6152 274 235 15 0 chr11 15457083 15457151 -135326402 + MLT2B2 LTR ERVL 153 221 -294 644 239 39 0 chr11 15457154 15457334 -135326219 + MER96B DNA MER1_type? 230 416 -1 186 133 0 0 chr11 15458539 15458569 -135324984 + (TG)n Simple_repeat Simple_repeat 2 31 0 375 23 0 0 chr11 15459254 15459298 -135324255 + (TG)n Simple_repeat Simple_repeat 2 45 0 190 259 111 12 chr11 15459559 15459640 -135323913 - MIR SINE MIR -76 132 44 530 256 231 15 chr11 15461100 15461303 -135322250 - MIR SINE MIR -14 248 2 2688 260 94 69 chr11 15461701 15463240 -135320313 - L1MEc LINE L1 -2016 4199 2635 2443 93 0 0 chr11 15463240 15463540 -135320013 - AluSp SINE Alu -13 300 1 2688 260 94 69 chr11 15463540 15464055 -135319498 - L1MEc LINE L1 -3580 2635 2135 239 188 78 0 chr11 15464119 15464183 -135319370 + L1ME2 LINE L1 6087 6155 -9 466 360 19 0 chr11 15465430 15465591 -135317962 + L2 LINE L2 2915 3078 -194 1435 202 11 57 chr11 15465677 15465848 -135317705 + MLT2C1 LTR ERVL 3 149 -248 2049 154 21 3 chr11 15465848 15466186 -135317367 + MER2 DNA MER2_type 1 344 0 1435 202 11 57 chr11 15466186 15466386 -135317167 + MLT2C1 LTR ERVL 149 357 -40 246 128 0 0 chr11 15466409 15466448 -135317105 + (TA)n Simple_repeat Simple_repeat 2 40 0 40 59 0 0 chr11 15466466 15466534 -135317019 + AT_rich Low_complexity Low_complexity 1 68 0 225 372 51 0 chr11 15466606 15466684 -135316869 + L2 LINE L2 3141 3222 -50 354 294 110 22 chr11 15467453 15467589 -135315964 + MER5A DNA MER1_type 36 183 -6 264 360 70 0 chr11 15468117 15468217 -135315336 + MIR SINE MIR 40 146 -62 1240 149 115 62 chr11 15468332 15468620 -135314933 + AluJo SINE Alu 1 303 -9 219 69 0 0 chr11 15468620 15468649 -135314904 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 200 114 0 29 chr11 15468653 15468688 -135314865 + (GAAAA)n Simple_repeat Simple_repeat 1 34 0 1406 271 155 19 chr11 15468901 15469425 -135314128 + MLT1G1 LTR MaLR 1 595 0 1484 177 18 92 chr11 15469588 15469978 -135313575 - MLT1A1 LTR MaLR -4 361 1 251 218 139 0 chr11 15470078 15470179 -135313374 + L1MC/D LINE L1 5729 5843 -1965 1879 157 3 10 chr11 15470704 15471004 -135312549 + AluJo SINE Alu 3 300 -12 193 336 93 37 chr11 15471699 15471806 -135311747 - L2 LINE L2 0 3272 3160 2441 135 38 21 chr11 15471952 15472373 -135311180 + MSTA LTR MaLR 1 428 0 223 392 0 0 chr11 15472465 15472562 -135310991 - MIR SINE MIR -7 255 159 484 391 13 4 chr11 15472670 15472908 -135310645 + L2 LINE L2 2738 2977 -337 337 324 123 9 chr11 15473089 15473308 -135310245 + L2 LINE L2 2977 3220 -52 195 129 0 0 chr11 15473784 15473815 -135309738 + (TGAG)n Simple_repeat Simple_repeat 1 31 0 763 153 0 114 chr11 15473974 15474150 -135309403 + L1MD3 LINE L1 6702 6880 -928 2491 161 106 27 chr11 15474153 15474745 -135308808 + L1MD3 LINE L1 7352 7990 -5 426 234 189 17 chr11 15475372 15475547 -135308006 - MIR SINE MIR -10 252 48 1380 156 29 25 chr11 15475596 15475834 -135307719 + MER8 DNA MER2_type 1 239 0 1774 189 103 7 chr11 15476296 15476713 -135306840 - LTR32 LTR ERVL 0 471 15 245 363 15 37 chr11 15477029 15477164 -135306389 + MIR3 SINE MIR 13 144 -64 285 98 0 0 chr11 15477270 15477311 -135306242 + (CAA)n Simple_repeat Simple_repeat 2 42 0 245 197 42 28 chr11 15477336 15477407 -135306146 - MLT1G1 LTR MaLR -19 576 505 427 285 60 60 chr11 15477465 15477665 -135305888 - MLT1I LTR MaLR -125 284 85 339 242 113 40 chr11 15477785 15477909 -135305644 - MIR SINE MIR -2 260 128 302 317 150 56 chr11 15478677 15478983 -135304570 - L2 LINE L2 -9 3263 2929 1739 163 69 67 chr11 15479052 15479518 -135304035 + MLT1C LTR MaLR 1 467 0 253 299 95 50 chr11 15479689 15479930 -135303623 - MLT1L LTR MaLR -14 601 350 863 265 55 48 chr11 15480125 15480525 -135303028 - MLT1H LTR MaLR -8 541 139 5713 115 14 3 chr11 15480548 15481038 -135302515 - L1PA16 LINE L1 -9 6157 5673 180 0 0 0 chr11 15481038 15481058 -135302495 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5713 115 14 3 chr11 15481058 15481606 -135301947 - L1PA16 LINE L1 -493 5673 5105 434 182 114 53 chr11 15483608 15483740 -135299813 - MER5B DNA MER1_type -5 173 34 216 188 275 0 chr11 15483924 15483993 -135299560 + MIR SINE MIR 66 153 -109 496 114 0 25 chr11 15484120 15484199 -135299354 - Charlie3 DNA MER1_type -8 2702 2626 18607 93 7 3 chr11 15484350 15485996 -135297557 - Charlie3 DNA MER1_type -86 2620 956 2117 131 39 28 chr11 15485996 15486355 -135297198 - THE1B LTR MaLR -1 363 1 18607 93 7 3 chr11 15486355 15487316 -135296237 - Charlie3 DNA MER1_type -1750 956 1 717 97 0 0 chr11 15487807 15487910 -135295643 + (TTCC)n Simple_repeat Simple_repeat 2 104 0 546 133 0 0 chr11 15488328 15488418 -135295135 + (GGGGA)n Simple_repeat Simple_repeat 4 93 0 279 280 30 106 chr11 15489264 15489354 -135294199 + MIR3 SINE MIR 72 152 -56 2058 125 0 14 chr11 15489354 15489680 -135293873 + AluSx SINE Alu 1 322 0 279 280 30 106 chr11 15489680 15489720 -135293833 + MIR3 SINE MIR 152 193 -15 1750 142 151 9 chr11 15490712 15491057 -135292496 - MSTA LTR MaLR -34 394 1 8391 166 28 13 chr11 15491057 15492677 -135290876 - MSTA-int LTR MaLR 0 1651 7 2187 123 0 25 chr11 15492678 15492996 -135290557 - AluSx SINE Alu -2 310 1 1808 157 141 8 chr11 15493004 15493379 -135290174 - MSTA LTR MaLR 0 428 4 * 2033 179 113 5 chr11 15493379 15493807 -135289746 - MLT2B1 LTR ERVL -42 478 3 249 257 86 0 chr11 15493927 15493997 -135289556 - L2 LINE L2 -38 3275 3200 1180 279 251 6 chr11 15494119 15494631 -135288922 + L2 LINE L2 1490 1875 -1439 2647 168 72 72 chr11 15494631 15495358 -135288195 - LTR8A LTR ERV1 0 727 1 1180 279 251 6 chr11 15495358 15495507 -135288046 + L2 LINE L2 1875 2313 -1001 521 232 38 44 chr11 15495970 15496220 -135287333 - L1ME LINE L1 -344 5822 5578 482 228 186 25 chr11 15496948 15497185 -135286368 + ORSL DNA AcHobo 1 275 0 24 53 0 0 chr11 15498023 15498061 -135285492 + AT_rich Low_complexity Low_complexity 1 38 0 442 274 53 81 chr11 15498815 15499039 -135284514 + L1MEd LINE L1 641 870 -5440 1553 210 24 30 chr11 15499039 15499411 -135284142 - MLT1A2 LTR MaLR -4 370 1 442 274 53 81 chr11 15499411 15499620 -135283933 + L1MEd LINE L1 870 1083 -5227 2045 147 7 7 chr11 15499620 15499927 -135283626 + AluSx SINE Alu 1 307 -5 442 274 53 81 chr11 15499927 15500465 -135283088 + L1MEd LINE L1 1083 1626 -4684 3745 190 32 9 chr11 15501380 15502227 -135281326 + MER63C DNA MER1_type 65 930 0 192 339 92 0 chr11 15502698 15502763 -135280790 - MIR SINE MIR -108 100 30 236 319 0 0 chr11 15502777 15502849 -135280704 + (CATA)n Simple_repeat Simple_repeat 3 74 0 436 303 27 64 chr11 15503674 15503862 -135279691 - MIR3 SINE MIR -13 195 15 281 302 93 39 chr11 15504609 15504738 -135278815 - L2 LINE L2 -21 3251 3116 405 221 32 21 chr11 15504793 15504888 -135278665 + MER5A DNA MER1_type 4 99 -90 250 260 68 14 chr11 15504900 15504973 -135278580 - MER5B DNA MER1_type -7 171 95 260 338 116 64 chr11 15504982 15505476 -135278077 - L2 LINE L2 -183 3089 2566 347 149 0 15 chr11 15505476 15505543 -135278010 + MLT1E3 LTR MaLR 559 624 0 639 253 6 6 chr11 15505543 15505709 -135277844 + MLT1E3-int LTR MaLR 1 166 -1205 188 213 106 0 chr11 15505919 15505966 -135277587 - MER5B DNA MER1_type -49 129 78 971 213 29 14 chr11 15506038 15506245 -135277308 + MER63A DNA MER1_type 1 210 0 387 329 71 37 chr11 15507505 15507778 -135275775 - L2 LINE L2 -255 3058 2778 305 308 136 10 chr11 15508357 15508555 -135274998 + L3 LINE CR1 1344 1566 -11 1531 253 24 3 chr11 15508878 15509254 -135274299 - MLT1F1 LTR MaLR -1 566 183 1624 234 110 51 chr11 15509295 15509451 -135274102 + L1ME2 LINE L1 5255 5400 -764 1792 179 0 20 chr11 15509451 15509748 -135273805 - AluJb SINE Alu -17 295 5 1624 234 110 51 chr11 15509748 15510215 -135273338 + L1ME2 LINE L1 5400 5940 -224 331 55 18 18 chr11 15510215 15510270 -135273283 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1624 234 110 51 chr11 15510270 15510463 -135273090 + L1ME2 LINE L1 5940 6120 -44 665 318 13 26 chr11 15510597 15510830 -135272723 + MIR SINE MIR 8 237 -25 238 248 75 30 chr11 15510847 15510980 -135272573 + L1M4 LINE L1 3818 3956 -2190 277 214 12 36 chr11 15511041 15511125 -135272428 + L1M4 LINE L1 4084 4165 -1981 22 0 0 0 chr11 15511419 15511441 -135272112 + AT_rich Low_complexity Low_complexity 1 22 0 410 340 65 25 chr11 15511615 15511894 -135271659 - L1M4 LINE L1 -3633 2513 2224 385 304 54 29 chr11 15512383 15512587 -135270966 - L1ME3 LINE L1 -190 5972 5764 489 17 0 0 chr11 15512708 15512768 -135270785 + L1PA6 LINE L1 6093 6152 -2 29 28 0 0 chr11 15512843 15512879 -135270674 + AT_rich Low_complexity Low_complexity 1 36 0 878 132 10 181 chr11 15512886 15513196 -135270357 - MLT1B LTR MaLR -133 257 1 943 200 96 40 chr11 15513427 15513796 -135269757 + MSTC LTR MaLR 3 428 0 235 301 12 12 chr11 15513892 15513975 -135269578 - MLT1F1 LTR MaLR -381 168 86 19874 29 0 2 chr11 15514622 15517790 -135265763 + L1PA3 LINE L1 2983 6155 0 874 268 148 25 chr11 15517992 15518600 -135264953 - L2 LINE L2 0 3313 2650 343 244 124 96 chr11 15518593 15518884 -135264669 + L3 LINE CR1 1278 1576 -1 * 706 175 7 44 chr11 15518901 15519038 -135264515 + L2 LINE L2 3182 3313 0 223 351 184 0 chr11 15519040 15519154 -135264399 + MIR3 SINE MIR 66 200 -8 680 265 18 6 chr11 15519999 15520165 -135263388 - MIR SINE MIR -55 207 40 589 179 68 0 chr11 15523103 15523220 -135260333 - MER63 DNA MER1_type 0 1061 937 674 180 97 70 chr11 15523379 15523464 -135260089 - MER63 DNA MER1_type -825 236 155 2278 97 0 0 chr11 15523464 15523753 -135259800 + AluSx SINE Alu 1 289 -23 674 180 97 70 chr11 15523753 15523895 -135259658 - MER63 DNA MER1_type -906 155 3 265 292 0 0 chr11 15524995 15525060 -135258493 + GA-rich Low_complexity Low_complexity 2 66 0 183 80 0 0 chr11 15525116 15525141 -135258412 + (CGG)n Simple_repeat Simple_repeat 2 26 0 408 259 64 53 chr11 15525682 15525851 -135257702 + MIR SINE MIR 14 183 -62 215 219 78 31 chr11 15527955 15528019 -135255534 + L2 LINE L2 3205 3271 -1 2337 171 53 36 chr11 15529062 15529508 -135254045 + L1MA9 LINE L1 5712 6170 -142 198 0 0 0 chr11 15529508 15529530 -135254023 + (CA)n Simple_repeat Simple_repeat 1 22 0 2337 171 53 36 chr11 15529530 15529631 -135253922 + L1MA9 LINE L1 6170 6268 -44 205 342 150 0 chr11 15529870 15529990 -135253563 - MIR SINE MIR -1 261 124 21 57 0 0 chr11 15530306 15530341 -135253212 + AT_rich Low_complexity Low_complexity 1 35 0 419 230 174 43 chr11 15530494 15530655 -135252898 + MIR3 SINE MIR 16 197 -11 1970 164 101 42 chr11 15532160 15532637 -135250916 - MLT1D LTR MaLR 0 505 1 464 317 119 15 chr11 15534125 15534358 -135249195 + MIR SINE MIR 10 262 0 2382 147 41 14 chr11 15535567 15535982 -135247571 - MSTC LTR MaLR 0 428 3 284 77 19 39 chr11 15537064 15537116 -135246437 + L1PA12 LINE L1 10 60 -7521 1397 128 0 15 chr11 15537123 15537327 -135246226 - AluSx SINE Alu -105 207 7 1874 238 31 6 chr11 15537332 15538321 -135245232 - L1MB3 LINE L1 -352 5831 4818 2215 120 7 0 chr11 15538363 15538672 -135244881 + AluSp SINE Alu 1 311 -2 1302 199 5 76 chr11 15538795 15539021 -135244532 - L1MA4 LINE L1 -153 6147 5961 1850 149 30 0 chr11 15539021 15539290 -135244263 - AluSx SINE Alu -35 277 1 1302 199 5 76 chr11 15539290 15539470 -135244083 - L1MA4 LINE L1 -339 5961 5770 23 33 0 0 chr11 15539479 15539509 -135244044 + AT_rich Low_complexity Low_complexity 1 30 0 415 211 95 14 chr11 15539512 15539659 -135243894 + HsTC2 DNA Tc2 1632 1790 -108 433 278 76 21 chr11 15539760 15539940 -135243613 + MER5B DNA MER1_type 10 178 0 857 214 36 0 chr11 15540045 15540241 -135243312 - MER6B DNA MER2_type -7 203 1 1493 143 5 5 chr11 15542125 15542348 -135241205 + AluSq SINE Alu 2 224 -89 1119 180 259 2 chr11 15542350 15542800 -135240753 + SATR1 Satellite Satellite 1 565 -3 506 215 200 45 chr11 15542825 15543025 -135240528 + SATR1 Satellite Satellite 185 415 -55 816 214 225 51 chr11 15543037 15543388 -135240165 + SATR1 Satellite Satellite 14 425 -45 2087 176 108 24 chr11 15543426 15546360 -135237193 + SATR1 Satellite Satellite 1 3180 -132 26790 88 4 4 chr11 15546360 15551162 -135232391 + L1PA7 LINE L1 1677 6468 -1 330 268 147 13 chr11 15551203 15551360 -135232193 - HAL1b LINE L1 -153 1195 1018 3053 208 68 30 chr11 15551672 15553111 -135230442 - L1ME2 LINE L1 -13 6220 4726 1378 267 40 28 chr11 15553113 15553764 -135229789 - L1ME2 LINE L1 -1864 4351 3693 1375 289 39 55 chr11 15553798 15554848 -135228705 - L1ME2 LINE L1 -5325 1071 39 503 307 36 50 chr11 15554857 15555134 -135228419 - HAL1b LINE L1 -1014 334 62 329 309 71 8 chr11 15555563 15555689 -135227864 + L2 LINE L2 3012 3145 -168 2030 204 119 36 chr11 15556616 15557368 -135226185 + Charlie2 DNA MER1_type 1855 2690 -172 1773 140 0 23 chr11 15557368 15557632 -135225921 + AluSx SINE Alu 39 296 -16 2030 204 119 36 chr11 15557632 15557746 -135225807 + Charlie2 DNA MER1_type 2690 2793 -69 207 282 141 29 chr11 15557770 15557940 -135225613 + MIR SINE MIR 71 259 -3 448 283 181 13 chr11 15558257 15558494 -135225059 + L2 LINE L2 3037 3313 0 264 401 62 0 chr11 15558530 15558692 -135224861 + L3 LINE CR1 471 642 -935 630 182 34 62 chr11 15559231 15559407 -135224146 - MER3 DNA MER1_type -22 187 17 1911 120 0 0 chr11 15560091 15560350 -135223203 + AluSg SINE Alu 35 293 -17 267 299 28 73 chr11 15560769 15560946 -135222607 + L3 LINE CR1 754 922 -655 811 95 103 0 chr11 15561322 15561448 -135222105 - MER85 DNA T2_type 0 139 1 302 167 0 0 chr11 15561541 15561595 -135221958 + MLT1K LTR MaLR 517 570 -18 203 366 54 0 chr11 15561606 15561699 -135221854 + L3 LINE CR1 955 1052 -525 212 303 26 26 chr11 15561730 15561806 -135221747 + L3 LINE CR1 1148 1223 -354 245 317 58 19 chr11 15561861 15561965 -135221588 - L3 LINE CR1 -27 1550 1443 216 326 95 32 chr11 15561975 15562070 -135221483 - L2 LINE L2 -8 3264 3164 2949 164 57 66 chr11 15564465 15565162 -135218391 - LTR8 LTR ERV1 0 691 1 1322 234 78 0 chr11 15565162 15565457 -135218096 - HUERS-P1 LTR ERV1 0 6263 5946 663 219 171 0 chr11 15565537 15565701 -135217852 - LTR49-int LTR ERV1 -57 6274 6083 1898 176 53 48 chr11 15565774 15566189 -135217364 - LTR49-int LTR ERV1 -541 5790 5374 1416 77 0 0 chr11 15566190 15566359 -135217194 - AluYa5 SINE Alu -12 299 131 3862 154 24 74 chr11 15566359 15566554 -135216999 - LTR49-int LTR ERV1 -630 5633 5430 2011 128 14 3 chr11 15566554 15566850 -135216703 - AluY SINE Alu -10 301 3 3862 154 24 74 chr11 15566850 15567464 -135216089 - LTR49-int LTR ERV1 -833 5430 4865 6219 218 19 66 chr11 15567490 15569393 -135214160 + L1P3 LINE L1 1209 3779 -3805 2234 135 62 8 chr11 15569393 15569749 -135213804 + THE1C LTR MaLR 1 375 0 7874 132 175 6 chr11 15569749 15571101 -135212452 + THE1C-int LTR MaLR 1 1580 0 1953 170 62 14 chr11 15571101 15571459 -135212094 + THE1C LTR MaLR 1 375 0 7171 147 5 13 chr11 15571460 15572689 -135210864 + L1P3 LINE L1 3776 4994 -2590 6080 206 14 13 chr11 15622694 15624048 -135159505 - L1 LINE L1 -2343 5222 3868 2855 204 34 55 chr11 15624052 15624280 -135159273 - L1M4 LINE L1 -841 6326 6095 2386 74 3 3 chr11 15624280 15624579 -135158974 + AluY SINE Alu 1 299 -12 2855 204 34 55 chr11 15624579 15625170 -135158383 - L1M4 LINE L1 -1072 6095 5524 * 11049 189 21 57 chr11 15625155 15627235 -135156318 - L1M4 LINE L1 -4975 2193 202 2171 136 0 0 chr11 15627235 15627543 -135156010 - AluSx SINE Alu -4 308 1 11049 189 21 57 chr11 15627543 15627738 -135155815 - L1M4 LINE L1 -6966 202 1 642 118 36 9 chr11 15627784 15627894 -135155659 - L1 LINE L1 -4613 2952 2840 8206 124 7 3 chr11 15627908 15629121 -135154432 - HSMAR2 DNA Mariner -45 1257 41 16735 165 11 33 chr11 15629141 15629159 -135154394 - L1 LINE L1 -4702 2863 2846 3134 127 33 0 chr11 15629159 15629641 -135153912 - L1PA14 LINE L1 0 6161 5664 16735 165 11 33 chr11 15629641 15630144 -135153409 - L1 LINE L1 -4719 2846 2333 1657 26 0 0 chr11 15630144 15630337 -135153216 + L1PA4 LINE L1 5960 6152 -3 16735 165 11 33 chr11 15630337 15632650 -135150903 - L1 LINE L1 -5232 2333 91 277 259 52 35 chr11 15633072 15633188 -135150365 - LTR67 LTR ERVL 0 557 440 * 1104 272 108 46 chr11 15633169 15633606 -135149947 - MLT1F LTR MaLR -78 464 1 1458 196 7 123 chr11 15636738 15637151 -135146402 - MLT1A1 LTR MaLR 0 365 1 305 278 70 32 chr11 15637216 15637403 -135146150 - L1ME4a LINE L1 -260 5861 5668 469 265 117 25 chr11 15637485 15637647 -135145906 - L1ME4a LINE L1 -2167 5641 5465 552 325 24 0 chr11 15637718 15637927 -135145626 + L3 LINE CR1 1330 1543 -34 * 1319 252 52 31 chr11 15637926 15638370 -135145183 + L2 LINE L2 1176 1628 -1686 384 302 44 22 chr11 15638346 15638528 -135145025 + L2 LINE L2 2821 3006 -307 * 694 247 42 25 chr11 15638548 15638831 -135144722 + L1M4 LINE L1 2206 2493 -3653 617 301 177 15 chr11 15639674 15640086 -135143467 + LTR33 LTR ERVL 38 516 -5 192 274 63 32 chr11 15640718 15640813 -135142740 - L2 LINE L2 -86 3227 3130 211 326 118 52 chr11 15640909 15641292 -135142261 - L2 LINE L2 -501 2813 2406 1686 170 14 7 chr11 15641806 15642100 -135141453 + AluJb SINE Alu 2 297 -15 423 234 154 23 chr11 15642170 15642345 -135141208 + MIR SINE MIR 49 246 -16 705 274 5 5 chr11 15642920 15643106 -135140447 - MER5A DNA MER1_type -1 188 3 277 179 0 0 chr11 15643635 15643691 -135139862 + MIR3 SINE MIR 104 159 -49 699 181 5 96 chr11 15643777 15643965 -135139588 + MER63B DNA MER1_type 4 174 -262 326 263 42 0 chr11 15643968 15644063 -135139490 + MER5A DNA MER1_type 91 189 0 1399 187 6 63 chr11 15644687 15645003 -135138550 - AluJo SINE Alu -14 298 1 499 185 0 0 chr11 15645115 15645196 -135138357 + MER5A DNA MER1_type 2 82 -107 321 314 46 20 chr11 15646357 15646510 -135137043 + MIR SINE MIR 73 229 -33 436 209 75 45 chr11 15646525 15646659 -135136894 + MIR SINE MIR 74 211 -51 426 20 0 0 chr11 15647275 15647326 -135136227 + (TG)n Simple_repeat Simple_repeat 2 52 0 2869 50 3 3 chr11 15647521 15647864 -135135689 - HERVK11 LTR ERVK -4699 3254 2912 * 3069 84 40 3 chr11 15647858 15648435 -135135118 - HERVK11 LTR ERVK -5255 2698 1165 * 5036 149 35 57 chr11 15648433 15649431 -135134122 - HERVK11 LTR ERVK -6977 976 1 6986 103 20 24 chr11 15649431 15650517 -135133036 - MER11C LTR ERVK 0 1236 1 2416 102 25 0 chr11 15651105 15651467 -135132086 + L1MA1 LINE L1 5932 6302 0 385 204 21 11 chr11 15654578 15654671 -135128882 - MIR SINE MIR -70 138 45 271 228 22 0 chr11 15657974 15658066 -135125487 + CT-rich Low_complexity Low_complexity 2 95 0 638 216 66 56 chr11 15658606 15658819 -135124734 - MIR SINE MIR -1 261 47 593 233 121 102 chr11 15658948 15659518 -135124035 - L1MC5 LINE L1 -51 7910 7330 230 250 20 50 chr11 15659518 15659618 -135123935 - L2 LINE L2 -447 2867 2771 513 239 398 13 chr11 15659618 15660153 -135123400 - LTR50 LTR ERVL -2 793 53 4460 231 77 18 chr11 15660157 15660628 -135122925 - L1MD3 LINE L1 -743 5403 4961 1044 183 56 103 chr11 15660628 15661037 -135122516 + MLT1B LTR MaLR 1 390 0 4460 231 77 18 chr11 15661037 15662569 -135120984 - L1MD3 LINE L1 -1185 4961 4086 2186 231 76 11 chr11 15662579 15663104 -135120449 + MLT1F1 LTR MaLR 1 559 -8 320 246 34 51 chr11 15663106 15663224 -135120329 - L1MD3 LINE L1 -2093 4053 3938 1642 86 0 0 chr11 15663240 15663450 -135120103 + L1PA12 LINE L1 5927 6136 -32 2112 224 50 34 chr11 15663550 15664364 -135119189 - L1MD3 LINE L1 -2516 3630 2804 51 14 0 14 chr11 15664377 15664408 -135119145 + AT_rich Low_complexity Low_complexity 1 31 -37 1346 114 19 0 chr11 15664408 15664618 -135118935 - L1PB1 LINE L1 -5 6146 5933 51 14 0 14 chr11 15664618 15664655 -135118898 + AT_rich Low_complexity Low_complexity 31 68 0 4672 95 16 22 chr11 15664963 15664988 -135118565 + L1PB1 LINE L1 5464 5488 -663 2427 103 3 0 chr11 15664988 15665298 -135118255 + AluSp SINE Alu 1 311 -2 4672 95 16 22 chr11 15665298 15665309 -135118244 + L1PB1 LINE L1 5488 6151 0 4729 95 0 12 chr11 15665309 15665964 -135117589 + L1PB1 LINE L1 5505 6151 0 755 228 20 0 chr11 15665960 15666162 -135117391 + L1M4 LINE L1 2315 2520 -3626 * 6510 190 51 21 chr11 15666187 15667801 -135115752 - L1P5 LINE L1 -674 5477 3814 467 128 37 18 chr11 15667902 15668011 -135115542 + GA-rich Low_complexity Low_complexity 3 113 0 2021 125 4 0 chr11 15669430 15669709 -135113844 - AluSx SINE Alu -32 280 1 401 308 112 9 chr11 15671289 15671503 -135112050 - MIR SINE MIR -1 261 26 243 63 0 0 chr11 15672295 15672330 -135111223 + MIR SINE MIR 112 145 -117 355 331 0 15 chr11 15672449 15672579 -135110974 + MIR SINE MIR 20 147 -61 358 349 51 53 chr11 15672676 15673235 -135110318 - L2 LINE L2 0 3272 2716 221 154 0 0 chr11 15673248 15673287 -135110266 - L2 LINE L2 0 3272 3234 26 64 0 0 chr11 15673428 15673475 -135110078 + AT_rich Low_complexity Low_complexity 1 47 0 3721 224 140 11 chr11 15673501 15674609 -135108944 - L1MC4 LINE L1 -104 7938 6688 239 268 110 0 chr11 15674682 15674764 -135108789 - L2 LINE L2 -222 3091 3001 1429 296 40 43 chr11 15674927 15675898 -135107655 + L2 LINE L2 2308 3272 0 252 328 40 8 chr11 15675903 15676028 -135107525 - L2 LINE L2 -861 2453 2325 210 247 13 26 chr11 15676489 15676566 -135106987 + (CTCA)n Simple_repeat Simple_repeat 1 76 0 790 293 159 11 chr11 15677355 15677997 -135105556 - L2 LINE L2 0 3313 2577 204 333 10 20 chr11 15678344 15678443 -135105110 - L2 LINE L2 -214 3058 2961 254 273 13 13 chr11 15678997 15679074 -135104479 - MIR3 SINE MIR -42 166 90 1500 132 0 0 chr11 15680274 15680487 -135103066 + AluSg/x SINE Alu 93 305 -5 474 288 20 14 chr11 15680487 15680633 -135102920 + MIR3 SINE MIR 48 194 -14 499 224 21 36 chr11 15680876 15681044 -135102509 - MIR SINE MIR -62 146 25 825 266 136 26 chr11 15681683 15682266 -135101287 - L1MEd LINE L1 -1278 4851 4205 2511 264 104 37 chr11 15682489 15684430 -135099123 - L1MEd LINE L1 -1915 4214 2119 21 0 0 0 chr11 15684476 15684497 -135099056 + AT_rich Low_complexity Low_complexity 1 21 0 1781 195 0 3 chr11 15684752 15685054 -135098499 - AluJb SINE Alu -11 301 1 915 279 127 34 chr11 15685113 15685903 -135097650 - L1MEd LINE L1 -4612 1698 689 228 294 0 15 chr11 15685915 15685983 -135097570 - L1MEd LINE L1 -5589 530 464 285 313 50 12 chr11 15686228 15686388 -135097165 - L1MEd LINE L1 -5943 176 11 454 221 123 26 chr11 15686517 15686671 -135096882 + MIR SINE MIR 78 246 -16 553 193 72 66 chr11 15686671 15686837 -135096716 - MER104 DNA Tc2 0 180 14 295 292 204 0 chr11 15687169 15687282 -135096271 - MLT1J2 LTR MaLR -14 436 301 279 0 0 0 chr11 15687296 15687327 -135096226 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr11 15687419 15687450 -135096103 + AT_rich Low_complexity Low_complexity 1 31 0 252 245 0 0 chr11 15687695 15687744 -135095809 - L2 LINE L2 -16 3256 3208 753 190 16 174 chr11 15688212 15688528 -135095025 - MLT1A1 LTR MaLR -2 363 98 16088 114 23 10 chr11 15688528 15690895 -135092658 - Tigger1 DNA MER2_type 0 2418 21 394 139 38 25 chr11 15690893 15690972 -135092581 - MLT1A1 LTR MaLR -348 80 1 * 267 207 284 9 chr11 15691234 15691350 -135092203 - MIR SINE MIR -65 197 50 397 279 206 20 chr11 15692036 15692240 -135091313 - MIR SINE MIR -6 256 15 1703 179 26 19 chr11 15693044 15693352 -135090201 - AluJo SINE Alu -2 310 1 638 188 87 7 chr11 15693390 15693528 -135090025 + MIR SINE MIR 104 252 -10 196 229 0 0 chr11 15694415 15694463 -135089090 + L2 LINE L2 2712 2759 -555 209 271 60 60 chr11 15694571 15694737 -135088816 + L2 LINE L2 2918 3083 -189 596 26 65 0 chr11 15695290 15695367 -135088186 - L1PA5 LINE L1 -8 6146 6065 502 313 102 24 chr11 15695844 15696227 -135087326 - L2 LINE L2 -337 2977 2565 291 274 27 0 chr11 15696524 15696597 -135086956 - LTR67 LTR ERVL -386 171 97 238 193 121 0 chr11 15696718 15696801 -135086752 - MIR SINE MIR -60 202 110 247 269 183 86 chr11 15697624 15697821 -135085732 - MIR SINE MIR -27 235 20 378 222 0 12 chr11 15698535 15698616 -135084937 + MIR SINE MIR 183 262 0 275 241 135 15 chr11 15699902 15700035 -135083518 - MIR SINE MIR 0 262 114 287 308 154 8 chr11 15700063 15700193 -135083360 - L2 LINE L2 -2 3270 3122 883 284 135 18 chr11 15700659 15701043 -135082510 - MLT1L LTR MaLR -8 607 179 494 170 47 28 chr11 15701194 15701300 -135082253 + MER53 DNA DNA 1 108 -81 408 292 71 13 chr11 15703308 15703462 -135080091 + MIR SINE MIR 13 175 -87 1406 134 124 72 chr11 15703566 15703856 -135079697 + MER1B DNA MER1_type 35 339 0 1047 288 86 10 chr11 15704571 15704828 -135078725 - LTR16A LTR ERVL -1 449 146 1000 216 138 27 chr11 15704828 15705161 -135078392 + MER93b LTR ERV1 1 370 -3 1047 288 86 10 chr11 15705161 15705320 -135078233 - LTR16A LTR ERVL -304 146 1 221 286 43 0 chr11 15705320 15705390 -135078163 - MIR SINE MIR -76 132 60 236 327 0 36 chr11 15705520 15705630 -135077923 - L2 LINE L2 -9 3263 3158 336 238 29 9 chr11 15706203 15706308 -135077245 - MIR3 SINE MIR -3 205 99 198 209 0 0 chr11 15706655 15706698 -135076855 + L2 LINE L2 3271 3313 0 516 228 152 24 chr11 15707062 15707245 -135076308 + MIR3 SINE MIR 2 205 -3 193 377 50 2 chr11 15707610 15707734 -135075819 + L2 LINE L2 2850 2976 -296 267 354 44 0 chr11 15707905 15708018 -135075535 - L2 LINE L2 -3 3310 3193 454 277 183 22 chr11 15708865 15709089 -135074464 + MIR SINE MIR 3 262 0 349 283 10 30 chr11 15709074 15709173 -135074380 + MIR SINE MIR 57 153 -109 * 190 250 161 36 chr11 15710404 15710516 -135073037 + L2 LINE L2 2376 2501 -813 327 257 108 20 chr11 15710876 15711024 -135072529 + L2 LINE L2 2924 3084 -188 500 286 148 0 chr11 15711075 15711264 -135072289 + MIR SINE MIR 11 227 -35 189 0 0 0 chr11 15711326 15711347 -135072206 + (T)n Simple_repeat Simple_repeat 1 21 0 231 279 59 0 chr11 15711365 15711433 -135072120 + L2 LINE L2 3199 3270 -43 775 336 4 0 chr11 15712082 15712341 -135071212 + MIR SINE MIR 2 261 -1 240 287 92 73 chr11 15712531 15712803 -135070750 - L2 LINE L2 -77 3195 2919 240 320 16 8 chr11 15712868 15712990 -135070563 - MIR3 SINE MIR -72 136 14 286 259 265 16 chr11 15713309 15713498 -135070055 + MIR SINE MIR 14 249 -13 1015 289 33 43 chr11 15714632 15715192 -135068361 + L2 LINE L2 2760 3311 -2 363 284 76 99 chr11 15715561 15716042 -135067511 - HAL1b LINE L1 -790 627 172 2073 129 16 13 chr11 15716042 15716352 -135067201 - AluY SINE Alu 0 311 1 363 284 76 99 chr11 15716352 15716441 -135067112 - HAL1b LINE L1 -1245 172 82 2071 122 116 3 chr11 15717185 15717512 -135066041 + THE1B LTR MaLR 1 364 0 683 259 5 11 chr11 15717847 15718032 -135065521 - MIR SINE MIR -58 204 21 186 167 0 48 chr11 15718449 15718491 -135065062 + L2 LINE L2 3180 3219 -94 196 243 215 28 chr11 15719160 15719267 -135064286 - L2 LINE L2 -5 3308 3182 397 314 186 0 chr11 15719291 15719501 -135064052 + MIR SINE MIR 14 262 0 21 0 0 0 chr11 15719506 15719527 -135064026 + AT_rich Low_complexity Low_complexity 1 21 0 1660 137 0 80 chr11 15719933 15720247 -135063306 - AluJo SINE Alu -23 289 1 2373 100 15 6 chr11 15720562 15720915 -135062638 - L1PA10 LINE L1 0 6168 5823 467 282 25 6 chr11 15721024 15721187 -135062366 - MIR SINE MIR -6 256 91 836 211 22 26 chr11 15721187 15721415 -135062138 + L1ME3A LINE L1 5944 6170 0 200 250 0 0 chr11 15721431 15721475 -135062078 - MIR SINE MIR -158 104 61 1571 102 4 35 chr11 15721981 15722236 -135061317 - AluSg/x SINE Alu 0 312 78 3221 175 8 19 chr11 15722236 15722397 -135061156 - L1MD3 LINE L1 -27 7968 7807 1491 203 81 9 chr11 15722397 15722718 -135060835 + MER2 DNA MER2_type 1 344 0 3221 175 8 19 chr11 15722718 15723178 -135060375 - L1MD3 LINE L1 -188 7807 7354 278 332 19 42 chr11 15725053 15725267 -135058286 - L2 LINE L2 -228 3044 2836 375 314 66 40 chr11 15725514 15725788 -135057765 + L1MC4a LINE L1 5679 5959 -1849 228 228 0 0 chr11 15726066 15726123 -135057430 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 958 282 41 43 chr11 15726465 15727021 -135056532 + L2 LINE L2 2759 3311 -2 336 230 108 40 chr11 15727502 15727650 -135055903 - L1ME4a LINE L1 -1 6120 5963 553 163 0 0 chr11 15727843 15727929 -135055624 - FLAM SINE Alu -18 125 40 362 211 67 58 chr11 15728695 15728799 -135054754 - MIR SINE MIR -10 252 148 729 258 72 0 chr11 15728813 15729007 -135054546 + MIR SINE MIR 13 220 -42 308 348 22 22 chr11 15729024 15729159 -135054394 - MIR SINE MIR -112 150 16 216 376 0 17 chr11 15729966 15730144 -135053409 + (CA)n Simple_repeat Simple_repeat 2 176 0 467 252 16 0 chr11 15731073 15731200 -135052353 - MIR3 SINE MIR -15 193 65 288 278 123 49 chr11 15731516 15731722 -135051831 + MIR SINE MIR 18 256 -6 2236 84 0 7 chr11 15732439 15732764 -135050789 + AluY SINE Alu 1 323 0 278 227 40 27 chr11 15733762 15733837 -135049716 + L2 LINE L2 3204 3279 -34 3672 222 99 44 chr11 15735269 15735653 -135047900 + Charlie2a DNA MER1_type 1 363 -2499 2324 108 0 19 chr11 15735653 15735969 -135047584 + AluSp SINE Alu 1 310 -3 3672 222 99 44 chr11 15735969 15736022 -135047531 + Charlie2a DNA MER1_type 363 412 -2450 246 62 0 0 chr11 15736022 15736054 -135047499 + (TG)n Simple_repeat Simple_repeat 2 33 0 3672 222 99 44 chr11 15736054 15736978 -135046575 + Charlie2a DNA MER1_type 412 1284 -1578 2298 113 0 0 chr11 15736978 15737279 -135046274 - AluSc SINE Alu -6 303 3 3672 222 99 44 chr11 15737279 15738534 -135045019 + Charlie2a DNA MER1_type 1284 2846 -16 2032 228 41 37 chr11 15739484 15739972 -135043581 - MLT1H1 LTR MaLR -65 490 1 504 241 373 0 chr11 15740526 15740762 -135042791 - LTR16B LTR ERVL -67 397 74 330 184 195 0 chr11 15741024 15741111 -135042442 + MIR3 SINE MIR 86 189 -19 561 207 0 27 chr11 15741951 15742113 -135041440 - FLAM_A SINE Alu 0 166 8 248 157 20 0 chr11 15742121 15742172 -135041381 - MIR SINE MIR -108 154 103 2634 30 3 7 chr11 15743566 15743867 -135039686 - AluY SINE Alu -11 300 1 342 274 98 0 chr11 15745085 15745187 -135038366 + L2 LINE L2 3155 3266 -6 407 291 56 28 chr11 15745537 15745716 -135037837 - MIR SINE MIR -70 192 9 534 220 23 0 chr11 15745718 15745850 -135037703 - MER69 DNA AcHobo -1 2525 2391 4819 38 5 3 chr11 15745883 15746463 -135037090 - L1PA5 LINE L1 -3 6151 5571 536 279 25 12 chr11 15746463 15746624 -135036929 - MER69 DNA AcHobo -844 382 220 340 306 53 41 chr11 15746921 15747091 -135036462 + MER5A DNA MER1_type 17 188 -1 372 284 135 45 chr11 15747180 15747402 -135036151 - MIR SINE MIR -3 259 18 476 228 188 0 chr11 15747466 15747615 -135035938 - MER5B DNA MER1_type 0 178 2 271 312 104 29 chr11 15748300 15748473 -135035080 + MIR3 SINE MIR 8 193 -15 303 298 63 13 chr11 15748800 15748958 -135034595 - MIR SINE MIR -1 261 96 608 283 106 4 chr11 15749285 15749522 -135034031 - MIR SINE MIR 0 262 2 424 297 55 15 chr11 15749613 15749815 -135033738 - MIR SINE MIR -37 225 16 216 111 0 0 chr11 15751240 15751276 -135032277 + (TA)n Simple_repeat Simple_repeat 2 37 0 220 342 171 0 chr11 15751687 15751804 -135031749 + L2 LINE L2 3136 3272 0 255 182 0 36 chr11 15752119 15752174 -135031379 + L2 LINE L2 3234 3286 -27 345 24 0 0 chr11 15752742 15752784 -135030769 + (CA)n Simple_repeat Simple_repeat 1 42 0 314 302 0 0 chr11 15754663 15754759 -135028794 - MIR SINE MIR -57 151 56 283 345 9 26 chr11 15754852 15754965 -135028588 - MIR SINE MIR -58 150 40 595 269 48 0 chr11 15755569 15755755 -135027798 - MIR SINE MIR -19 243 49 242 254 0 45 chr11 15756138 15756205 -135027348 - MIR SINE MIR -62 146 83 684 180 31 8 chr11 15756212 15756340 -135027213 - L2 LINE L2 0 3313 3183 1535 213 37 19 chr11 15756343 15756667 -135026886 + MER58B DNA MER1_type 10 339 -2 417 270 110 38 chr11 15756709 15756946 -135026607 - MIR SINE MIR 0 262 9 498 246 0 0 chr11 15757709 15757823 -135025730 + FLAM_C SINE Alu 27 140 -3 242 261 162 9 chr11 15758283 15758409 -135025144 - MIR SINE MIR -56 152 9 296 333 49 7 chr11 15759306 15759450 -135024103 + MIR SINE MIR 93 242 -20 280 254 145 29 chr11 15761795 15761933 -135021620 + MIR SINE MIR 46 199 -63 350 273 53 38 chr11 15762291 15762423 -135021130 - MIR3 SINE MIR -39 169 36 284 313 10 10 chr11 15762757 15762856 -135020697 + MIR SINE MIR 38 136 -72 468 0 0 0 chr11 15763097 15763149 -135020404 + (TG)n Simple_repeat Simple_repeat 1 52 0 3042 241 71 48 chr11 15763820 15764710 -135018843 - L1MC/D LINE L1 -706 5458 4543 2067 83 6 102 chr11 15764710 15765034 -135018519 - AluSx SINE Alu -19 293 1 3042 241 71 48 chr11 15765034 15765560 -135017993 - L1MC/D LINE L1 -1621 4543 4030 251 62 0 0 chr11 15765788 15765820 -135017733 + Alu SINE Alu 30 61 -238 438 92 0 0 chr11 15765820 15765885 -135017668 + Alu SINE Alu 242 306 -6 379 268 32 57 chr11 15765892 15766015 -135017538 + MER5B DNA MER1_type 59 178 0 1728 195 65 34 chr11 15767253 15767637 -135015916 + MSTD LTR MaLR 1 396 0 336 272 26 9 chr11 15768099 15768213 -135015340 + MIR SINE MIR 19 134 -74 226 156 22 0 chr11 15768979 15769024 -135014529 + CT-rich Low_complexity Low_complexity 1 46 0 242 265 44 0 chr11 15769078 15769146 -135014407 + L2 LINE L2 3193 3263 -9 199 284 168 0 chr11 15769498 15769593 -135013960 - MIR SINE MIR -28 234 124 275 281 156 22 chr11 15769595 15769650 -135013903 - MIR SINE MIR -86 176 130 2477 98 59 8 chr11 15769650 15770007 -135013546 - THE1C LTR MaLR 0 375 1 275 281 156 22 chr11 15770007 15770086 -135013467 - MIR SINE MIR -132 130 24 1269 296 54 18 chr11 15770376 15770934 -135012619 + L1ME3A LINE L1 5374 5951 -219 201 74 0 0 chr11 15771164 15771191 -135012362 + (TA)n Simple_repeat Simple_repeat 2 28 0 325 333 45 0 chr11 15771676 15771853 -135011700 - MER5A DNA MER1_type -1 188 4 747 261 36 27 chr11 15773116 15773338 -135010215 + MIR SINE MIR 17 240 -22 211 253 105 0 chr11 15773637 15773732 -135009821 - MIR SINE MIR -56 152 48 229 273 0 0 chr11 15775514 15775569 -135007984 - MIR SINE MIR -73 135 81 496 225 108 96 chr11 15775590 15775839 -135007714 - MER102b DNA MER1_type 0 341 90 417 301 78 31 chr11 15776607 15776800 -135006753 + MIR SINE MIR 20 221 -41 633 336 72 24 chr11 15777667 15778042 -135005511 + L2 LINE L2 2921 3313 0 284 222 114 66 chr11 15778055 15778222 -135005331 + MIR SINE MIR 45 219 -43 318 362 48 10 chr11 15779856 15780063 -135003490 + MIR SINE MIR 48 262 0 533 303 61 14 chr11 15780500 15780735 -135002818 + MIR SINE MIR 8 250 -12 741 251 28 24 chr11 15782015 15782226 -135001327 + MIR SINE MIR 5 216 -46 2724 137 31 21 chr11 15782359 15782400 -135001153 - MSTA LTR MaLR 0 428 389 1581 186 18 14 chr11 15782400 15782508 -135001045 + AluJb SINE Alu 24 130 -182 654 35 53 0 chr11 15782508 15782622 -135000931 + (TA)n Simple_repeat Simple_repeat 1 120 0 1581 186 18 14 chr11 15782622 15782792 -135000761 + AluJb SINE Alu 130 303 -9 2724 137 31 21 chr11 15782792 15783174 -135000379 - MSTA LTR MaLR -39 389 1 1640 106 18 0 chr11 15783878 15784104 -134999449 + MER30 DNA MER1_type 1 230 0 668 209 0 0 chr11 15785000 15785139 -134998414 - FLAM_A SINE Alu 0 139 1 2269 208 65 9 chr11 15785164 15785625 -134997928 + MLT1D LTR MaLR 19 505 0 234 302 151 0 chr11 15785625 15785731 -134997822 - MIR SINE MIR -139 123 2 337 53 18 35 chr11 15786276 15786333 -134997220 + (TTCC)n Simple_repeat Simple_repeat 4 59 0 27 29 0 0 chr11 15787212 15787246 -134996307 + AT_rich Low_complexity Low_complexity 1 34 0 2390 92 3 0 chr11 15788355 15788660 -134994893 + AluSx SINE Alu 1 306 -6 337 273 56 28 chr11 15789682 15789825 -134993728 - L2 LINE L2 -10 3262 3116 581 213 255 5 chr11 15789866 15790054 -134993499 + MIR SINE MIR 7 241 -21 333 240 31 0 chr11 15790076 15790172 -134993381 - LTR33 LTR ERVL -20 501 403 494 254 158 46 chr11 15790275 15790535 -134993018 - MER102b DNA MER1_type -4 337 49 433 310 80 11 chr11 15791070 15791257 -134992296 + MIR SINE MIR 48 247 -15 418 253 11 0 chr11 15791919 15792093 -134991460 + (TTCA)n Simple_repeat Simple_repeat 3 178 0 380 299 42 7 chr11 15792114 15792258 -134991295 - L2 LINE L2 0 3313 3165 190 289 22 82 chr11 15793180 15793315 -134990238 + MIR SINE MIR 80 206 -56 192 298 0 0 chr11 15794036 15794083 -134989470 + MIR SINE MIR 59 105 -103 395 248 9 18 chr11 15794090 15794199 -134989354 - L2 LINE L2 0 3313 3206 1679 207 64 24 chr11 15794231 15794685 -134988868 - Charlie4a DNA MER1_type -7 501 30 232 292 79 0 chr11 15794859 15794948 -134988605 + L3 LINE CR1 1207 1302 -275 301 309 10 46 chr11 15796260 15796630 -134986923 + CT-rich Low_complexity Low_complexity 1 356 0 293 324 37 0 chr11 15797190 15797298 -134986255 + MIR SINE MIR 81 192 -70 460 254 42 88 chr11 15797576 15797836 -134985717 - L2 LINE L2 0 3272 3025 275 116 0 0 chr11 15797892 15797935 -134985618 + tRNA-Cys-TGC tRNA tRNA 1 43 -32 823 183 0 144 chr11 15799420 15799628 -134983925 - MER63A DNA MER1_type 0 210 33 340 266 112 51 chr11 15799815 15800029 -134983524 - MIR SINE MIR -31 231 5 198 309 48 48 chr11 15800158 15800284 -134983269 - MIR3 SINE MIR -47 161 36 207 0 0 0 chr11 15800315 15800338 -134983215 + (TA)n Simple_repeat Simple_repeat 1 23 0 3258 195 23 10 chr11 15800338 15801089 -134982464 - Charlie1a DNA MER1_type -652 803 1 184 193 48 96 chr11 15801089 15801172 -134982381 - MIR3 SINE MIR -48 160 82 884 316 99 15 chr11 15801349 15801805 -134981748 - LTR33 LTR ERVL 0 521 28 388 251 22 71 chr11 15802737 15802965 -134980588 + MIR SINE MIR 3 214 -48 485 257 83 0 chr11 15803251 15803297 -134980256 - MLT1F1 LTR MaLR -7 535 494 267 79 0 0 chr11 15803297 15803335 -134980218 + (CAA)n Simple_repeat Simple_repeat 2 39 0 485 257 83 0 chr11 15803335 15803432 -134980121 - MLT1F1 LTR MaLR -48 494 380 1300 223 18 55 chr11 15803443 15803771 -134979782 + L1MB7 LINE L1 14 329 -6213 * 4064 195 48 7 chr11 15803769 15804984 -134978569 + L1MB7 LINE L1 5421 6682 0 1669 234 43 13 chr11 15804987 15805384 -134978169 - MLT1F1 LTR MaLR -158 409 1 21 0 0 0 chr11 15806214 15806235 -134977318 + AT_rich Low_complexity Low_complexity 1 21 0 254 186 164 93 chr11 15806624 15806764 -134976789 - MIR SINE MIR -13 249 100 1011 197 86 4 chr11 15807036 15807270 -134976283 + MIR SINE MIR 5 257 -5 214 326 148 0 chr11 15807359 15807494 -134976059 - MIR3 SINE MIR -6 202 48 479 279 137 18 chr11 15807525 15807744 -134975809 - MIR SINE MIR -14 248 4 354 123 0 0 chr11 15808290 15808347 -134975206 + (TG)n Simple_repeat Simple_repeat 2 58 0 2242 101 10 0 chr11 15809073 15809369 -134974184 - AluSq SINE Alu -14 299 1 1993 172 86 32 chr11 15810084 15810527 -134973026 + MLT1C LTR MaLR 1 467 0 310 364 8 8 chr11 15812260 15812392 -134971161 - MIR SINE MIR -108 154 23 409 297 126 7 chr11 15812991 15813215 -134970338 + MIR SINE MIR 19 262 0 280 296 11 0 chr11 15813568 15813656 -134969897 + MER117 DNA MER1_type 1 89 -108 188 265 103 15 chr11 15813727 15813795 -134969758 + MIR SINE MIR 64 137 -125 228 284 157 10 chr11 15814134 15814236 -134969317 - MIR SINE MIR -123 139 23 923 278 108 59 chr11 15815037 15815237 -134968316 + L1M4 LINE L1 838 1027 -5617 318 26 0 0 chr11 15815237 15815276 -134968277 + (CA)n Simple_repeat Simple_repeat 2 40 0 923 278 108 59 chr11 15815276 15816153 -134967400 + L1M4 LINE L1 1027 1938 -4706 2265 200 48 58 chr11 15816168 15816707 -134966846 - MLT1E2 LTR MaLR -3 623 90 915 201 81 100 chr11 15816722 15817031 -134966522 - MLT1E2 LTR MaLR -234 392 90 1232 180 54 138 chr11 15817046 15817474 -134966079 - MLT1E2 LTR MaLR -234 392 1 326 305 30 18 chr11 15817498 15817662 -134965891 + L1M4 LINE L1 2004 2169 -4475 589 280 113 16 chr11 15817973 15818352 -134965201 - L1MEc LINE L1 -2582 3633 3218 640 279 106 33 chr11 15819551 15819910 -134963643 - L1MEc LINE L1 -4616 1780 1396 1807 228 34 39 chr11 15819911 15820502 -134963051 - L1MEc LINE L1 -5117 1279 692 1348 241 35 22 chr11 15820504 15820873 -134962680 - L1MEc LINE L1 -5995 401 28 758 320 40 17 chr11 15822319 15822619 -134960934 + MLT1I LTR MaLR 72 378 -31 644 175 0 0 chr11 15822730 15822833 -134960720 + AluSp/q SINE Alu 202 304 -9 466 269 39 32 chr11 15822931 15823087 -134960466 + MLT1J1 LTR MaLR 3 159 -287 459 278 119 7 chr11 15823113 15823264 -134960289 + MLT1J2 LTR MaLR 264 431 -19 506 90 0 13 chr11 15823780 15823858 -134959695 + (TCCC)n Simple_repeat Simple_repeat 4 80 0 210 143 0 0 chr11 15823867 15823902 -134959651 + (T)n Simple_repeat Simple_repeat 1 35 0 316 306 86 105 chr11 15824518 15824822 -134958731 + L2 LINE L2 2971 3268 -4 2145 48 0 4 chr11 15825462 15825735 -134957818 - L1P LINE L1 -1015 5131 4860 236 328 0 0 chr11 15825782 15825849 -134957704 + L2 LINE L2 3186 3252 -20 624 282 59 56 chr11 15825892 15826197 -134957356 - L2 LINE L2 0 3313 3008 299 293 0 0 chr11 15826208 15826283 -134957270 - L2 LINE L2 -3 3269 3195 229 267 40 0 chr11 15826365 15826440 -134957113 + GA-rich Low_complexity Low_complexity 2 79 0 2112 196 8 6 chr11 15826446 15826809 -134956744 - MLT1A1 LTR MaLR -1 364 1 3042 196 31 19 chr11 15826809 15827391 -134956162 - MLT1A1-int LTR MaLR 0 1735 1147 2507 78 0 3 chr11 15827533 15827841 -134955712 - AluY SINE Alu -4 307 1 1109 224 0 9 chr11 15827883 15828097 -134955456 - MER20 DNA MER1_type 0 219 8 250 203 141 0 chr11 15828244 15828308 -134955245 + L2 LINE L2 3200 3272 0 611 182 191 120 chr11 15829441 15829650 -134953903 - MER58A DNA MER1_type 0 224 1 240 295 74 49 chr11 15829756 15829878 -134953675 - L2 LINE L2 -6 3266 3142 313 269 92 8 chr11 15831173 15831292 -134952261 - MIR SINE MIR -71 191 63 1128 254 121 33 chr11 15831824 15832312 -134951241 + MLT1H LTR MaLR 7 537 -12 645 233 56 70 chr11 15832377 15832592 -134950961 - MIR SINE MIR -11 251 40 374 263 119 8 chr11 15832816 15832934 -134950619 - MIR SINE MIR -108 154 24 263 292 53 26 chr11 15833041 15833154 -134950399 - L2 LINE L2 -19 3253 3138 644 216 172 30 chr11 15833395 15833691 -134949862 + L1ME4a LINE L1 5485 5822 -299 359 250 118 64 chr11 15833706 15833910 -134949643 + L1ME4a LINE L1 5859 6073 -48 24 0 0 0 chr11 15833981 15834005 -134949548 + AT_rich Low_complexity Low_complexity 1 24 0 434 308 98 13 chr11 15834233 15834457 -134949096 + MIR SINE MIR 20 262 0 565 312 7 7 chr11 15834845 15834999 -134948554 - MER117 DNA MER1_type -43 154 1 225 299 102 48 chr11 15835142 15835329 -134948224 + MER117 DNA MER1_type 1 197 0 243 200 0 0 chr11 15835657 15835702 -134947851 + L2 LINE L2 3265 3309 -4 203 341 35 12 chr11 15836374 15836459 -134947094 - L3 LINE CR1 -3 1574 1488 237 355 76 42 chr11 15836615 15836877 -134946676 - L3 LINE CR1 -222 1355 1085 207 211 0 0 chr11 15837321 15837359 -134946194 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 181 200 200 40 chr11 15837372 15837422 -134946131 - L2 LINE L2 -60 3212 3155 13725 26 3 0 chr11 15838563 15840852 -134942701 - L1PA4 LINE L1 0 6155 3862 476 262 0 34 chr11 15841153 15841302 -134942251 + L2 LINE L2 2386 2529 -785 742 295 30 13 chr11 15842115 15842420 -134941133 + L1ME3A LINE L1 5653 5962 -208 409 295 84 59 chr11 15842658 15842721 -134940832 + MLT1I LTR MaLR 80 140 -269 402 21 0 0 chr11 15842721 15842768 -134940785 + (TG)n Simple_repeat Simple_repeat 2 48 0 409 295 84 59 chr11 15842768 15843026 -134940527 + MLT1I LTR MaLR 140 409 0 218 307 27 0 chr11 15844349 15844424 -134939129 + CT-rich Low_complexity Low_complexity 3 79 0 184 155 17 17 chr11 15845270 15845328 -134938225 + (TCTCTG)n Simple_repeat Simple_repeat 3 60 0 483 230 69 141 chr11 15845350 15845565 -134937988 + L3 LINE CR1 799 1028 -549 968 245 32 12 chr11 15845565 15845818 -134937735 - MIR SINE MIR 0 262 5 483 230 69 141 chr11 15845818 15846107 -134937446 + L3 LINE CR1 1028 1267 -310 440 234 69 21 chr11 15846432 15846577 -134936976 - L1ME4a LINE L1 -15 6106 5955 337 315 124 42 chr11 15846916 15847326 -134936227 - L2 LINE L2 0 3272 2829 1439 221 25 34 chr11 15847329 15847682 -134935871 + L1ME3 LINE L1 5813 6162 0 242 286 0 0 chr11 15847713 15847769 -134935784 + MER5C DNA MER1_type 6 61 -263 190 272 54 54 chr11 15847980 15848016 -134935537 - MIR SINE MIR -122 140 105 1684 202 48 22 chr11 15848016 15848372 -134935181 + MLT1A1 LTR MaLR 1 365 0 190 272 54 54 chr11 15848372 15848427 -134935126 - MIR SINE MIR -156 106 49 348 309 45 28 chr11 15848571 15848749 -134934804 - MIR SINE MIR -1 261 81 260 291 69 80 chr11 15849300 15849475 -134934078 + MIR SINE MIR 23 195 -67 438 20 0 0 chr11 15849639 15849690 -134933863 + (TG)n Simple_repeat Simple_repeat 2 52 0 378 340 72 26 chr11 15851208 15851552 -134932001 - L2 LINE L2 -182 3090 2734 257 261 96 17 chr11 15851592 15851707 -134931846 - L1ME4a LINE L1 -23 6098 5975 205 294 0 15 chr11 15851776 15851844 -134931709 + (CA)n Simple_repeat Simple_repeat 2 68 0 1237 180 0 5 chr11 15851844 15852055 -134931498 + MER2 DNA MER2_type 1 210 -135 22 70 0 0 chr11 15852056 15852099 -134931454 + AT_rich Low_complexity Low_complexity 1 43 0 605 278 81 56 chr11 15852222 15852456 -134931097 - L1P4 LINE L1 -297 5824 5591 214 198 57 113 chr11 15852463 15852569 -134930984 - L2 LINE L2 -569 2745 2646 1827 104 43 43 chr11 15852806 15853135 -134930418 - AluY SINE Alu 0 329 1 254 305 84 0 chr11 15854149 15854244 -134929309 - L2 LINE L2 -16 3256 3154 210 315 50 120 chr11 15855691 15855891 -134927662 - L2 LINE L2 -81 3191 3006 979 219 38 0 chr11 15855892 15856102 -134927451 - MER58A DNA MER1_type -1 223 6 702 260 52 16 chr11 15856196 15856388 -134927165 - MIR SINE MIR -59 203 5 352 301 24 32 chr11 15857702 15857825 -134925728 - MIR SINE MIR -66 142 21 701 261 10 35 chr11 15858430 15858629 -134924924 - MER63A DNA MER1_type -16 194 1 429 319 33 14 chr11 15858629 15858808 -134924745 - MIR SINE MIR -64 144 4 318 354 20 14 chr11 15858909 15859056 -134924497 - MIR SINE MIR -45 217 70 288 319 50 50 chr11 15859803 15859963 -134923590 + MIR SINE MIR 62 221 -41 21 0 0 0 chr11 15860302 15860323 -134923230 + AT_rich Low_complexity Low_complexity 1 21 0 191 349 0 0 chr11 15860654 15860717 -134922836 + MIR SINE MIR 190 252 -10 312 293 103 32 chr11 15861640 15861825 -134921728 + MIR3 SINE MIR 3 191 -69 2520 61 0 23 chr11 15862958 15863268 -134920285 + AluY SINE Alu 1 303 -8 321 203 14 14 chr11 15864137 15864206 -134919347 - MIR SINE MIR -73 135 67 775 252 58 19 chr11 15864207 15864413 -134919140 + MIR SINE MIR 3 216 -46 198 103 0 0 chr11 15864462 15864491 -134919062 + (TCC)n Simple_repeat Simple_repeat 2 30 0 264 255 235 73 chr11 15865083 15865287 -134918266 + L3 LINE CR1 1328 1564 -13 319 278 183 6 chr11 15865567 15865736 -134917817 + MIR SINE MIR 21 219 -43 295 228 76 0 chr11 15866194 15866273 -134917280 + MIR SINE MIR 101 185 -77 21 57 0 0 chr11 15866383 15866418 -134917135 + AT_rich Low_complexity Low_complexity 1 35 0 554 224 0 83 chr11 15966600 15966805 -134816748 + L1MA6 LINE L1 2789 2976 -3170 * 1797 136 9 19 chr11 15966800 15967116 -134816437 + L1MA5 LINE L1 5863 6175 -125 901 170 0 0 chr11 15967116 15967251 -134816302 + AluSx SINE Alu 1 135 -177 2501 89 0 3 chr11 15967252 15967566 -134815987 + AluSq SINE Alu 1 313 0 23 0 0 0 chr11 15967566 15967589 -134815964 + AT_rich Low_complexity Low_complexity 1 23 0 800 176 39 39 chr11 15967899 15968052 -134815501 + AluSx SINE Alu 139 291 -21 818 135 7 0 chr11 15968054 15968195 -134815358 + L1MA5 LINE L1 6159 6300 0 11327 177 27 39 chr11 15968214 15968760 -134814793 + L1MA6 LINE L1 2963 3514 -2786 2398 97 0 3 chr11 15968760 15969071 -134814482 + AluSx SINE Alu 1 310 -2 11327 177 27 39 chr11 15969071 15969694 -134813859 + L1MA6 LINE L1 3514 4143 -2157 246 32 0 0 chr11 15969694 15969725 -134813828 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 11327 177 27 39 chr11 15969725 15971672 -134811881 + L1MA6 LINE L1 4143 6064 -236 312 262 29 0 chr11 15971728 15971831 -134811722 + L1M4 LINE L1 2880 2985 -3161 404 222 163 13 chr11 15972041 15972194 -134811359 + MER5B DNA MER1_type 1 176 -2 180 0 0 0 chr11 15972763 15972783 -134810770 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 789 146 0 23 chr11 15972787 15972917 -134810636 - FLAM_C SINE Alu -6 127 1 321 297 58 14 chr11 15972919 15973057 -134810496 - LTR67 LTR ERVL -40 517 374 361 304 31 70 chr11 15973447 15973674 -134809879 + L2 LINE L2 2443 2660 -654 198 71 0 0 chr11 15973849 15973877 -134809676 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 270 262 19 68 chr11 15974361 15974464 -134809089 + L2 LINE L2 2932 3029 -243 333 284 61 7 chr11 15974936 15975084 -134808469 - L1ME4a LINE L1 -1 6120 5965 506 313 17 0 chr11 15975190 15975366 -134808187 - L1ME4a LINE L1 -347 5774 5596 1673 275 10 5 chr11 15976276 15976672 -134806881 + LTR16C LTR ERVL 68 465 -26 228 399 42 0 chr11 15979662 15979830 -134803723 + MIR SINE MIR 77 251 -11 875 323 43 37 chr11 15980683 15981251 -134802302 + L2 LINE L2 2708 3282 -31 2787 10 0 3 chr11 15981741 15982047 -134801506 - AluY SINE Alu -6 305 1 308 284 10 39 chr11 15982711 15982813 -134800740 + L1ME LINE L1 5481 5579 -542 327 292 62 11 chr11 15982832 15983010 -134800543 - L1P5 LINE L1 -700 5451 5265 361 278 40 88 chr11 15983566 15984113 -134799440 - L1ME4a LINE L1 -1440 4706 4186 2451 60 13 0 chr11 15984246 15984548 -134799005 - AluY SINE Alu -5 306 1 437 123 0 49 chr11 15984736 15984817 -134798736 - AluSq/x SINE Alu -180 133 57 1287 162 0 0 chr11 15984817 15985008 -134798545 - AluSx SINE Alu -121 191 1 2878 248 61 31 chr11 15985116 15985326 -134798227 - L1M2 LINE L1 -4171 2936 2734 182 62 31 0 chr11 15985326 15985358 -134798195 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2878 248 61 31 chr11 15985358 15986780 -134796773 - L1M2 LINE L1 -4373 2734 1292 1528 186 4 11 chr11 15986784 15987063 -134796490 - L1M2 LINE L1 -6753 277 1 395 286 55 45 chr11 15987140 15987360 -134796193 + L1ME LINE L1 5122 5343 -803 345 308 33 17 chr11 15987404 15987620 -134795933 + L1ME LINE L1 5420 5645 -525 * 348 225 81 9 chr11 15987609 15987720 -134795833 - L1MC3 LINE L1 -1757 6028 5910 323 232 109 17 chr11 15987727 15987859 -134795694 + L1ME LINE L1 5681 5823 -339 189 94 0 0 chr11 15987893 15987925 -134795628 + (A)n Simple_repeat Simple_repeat 1 32 0 26 74 0 0 chr11 15988201 15988255 -134795298 + AT_rich Low_complexity Low_complexity 1 54 0 220 267 67 44 chr11 15988262 15988352 -134795201 + MIR SINE MIR 39 130 -78 241 360 27 9 chr11 15989141 15989252 -134794301 + L3 LINE CR1 1174 1286 -291 788 316 85 36 chr11 15989331 15989875 -134793678 - L2 LINE L2 -17 3296 2729 367 302 23 0 chr11 15990026 15990155 -134793398 + L1ME LINE L1 4713 4844 -1302 251 242 98 72 chr11 15990235 15990388 -134793165 + L1ME LINE L1 5009 5165 -981 5275 171 22 23 chr11 15990391 15991855 -134791698 + L1MA7 LINE L1 4814 6287 -4 616 261 85 6 chr11 15991883 15992181 -134791372 + L1ME LINE L1 5176 5495 -667 202 268 18 18 chr11 15992181 15992237 -134791316 + GA-rich Low_complexity Low_complexity 4 59 0 284 291 131 30 chr11 15992302 15992539 -134791014 - L2 LINE L2 -338 2976 2716 446 204 0 23 chr11 15992843 15992931 -134790622 + MER81 DNA DNA 29 114 0 468 288 51 19 chr11 15992942 15993157 -134790396 + L2 LINE L2 2284 2505 -809 1508 280 138 4 chr11 15993196 15993897 -134789656 - L2 LINE L2 -78 3235 2452 427 321 24 53 chr11 15993914 15994123 -134789430 + L2 LINE L2 2550 2752 -562 297 370 11 0 chr11 15994197 15994289 -134789264 + L2 LINE L2 3180 3272 -41 708 293 4 23 chr11 15994332 15994598 -134788955 + HAL1b LINE L1 521 781 -567 315 303 48 37 chr11 15994803 15994991 -134788562 + L1ME1 LINE L1 50 239 -5880 497 267 31 69 chr11 15995766 15996126 -134787427 + L1ME1 LINE L1 890 1235 -4884 324 0 0 0 chr11 15996151 15996187 -134787366 + (CA)n Simple_repeat Simple_repeat 2 37 0 3355 233 66 18 chr11 15996221 15997928 -134785625 + L1ME1 LINE L1 1433 3181 -2948 1962 218 53 81 chr11 15997921 15999175 -134784378 + L1ME1 LINE L1 4660 5882 -265 * 258 259 50 13 chr11 15999187 15999289 -134784264 + L1ME1 LINE L1 5959 6066 -81 2179 175 3 3 chr11 15999334 15999699 -134783854 - MLT1A1 LTR MaLR 0 365 1 2471 265 32 23 chr11 15999722 16000027 -134783526 + L1ME2 LINE L1 3049 3350 -2796 2119 112 0 10 chr11 16000027 16000321 -134783232 - AluSx SINE Alu -21 291 1 2471 265 32 23 chr11 16000321 16000959 -134782594 + L1ME2 LINE L1 3350 4000 -2146 1863 257 9 61 chr11 16000954 16001639 -134781914 + L1ME2 LINE L1 5504 6152 -12 * 386 231 66 28 chr11 16001651 16001833 -134781720 + L1M4 LINE L1 2316 2504 -3642 780 216 18 18 chr11 16002138 16002309 -134781244 + FAM SINE Alu 4 174 -1 21 0 0 0 chr11 16002411 16002432 -134781121 + AT_rich Low_complexity Low_complexity 1 21 0 233 298 126 0 chr11 16002448 16002646 -134780907 + L1ME LINE L1 5693 5915 -206 206 323 83 0 chr11 16003018 16003114 -134780439 + L3 LINE CR1 1463 1566 -11 2136 38 0 0 chr11 16003438 16003699 -134779854 + L1PA5 LINE L1 5894 6154 0 342 0 0 0 chr11 16003715 16003753 -134779800 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2383 79 0 13 chr11 16003844 16004147 -134779406 + AluSq SINE Alu 1 299 -14 536 256 29 7 chr11 16005441 16005578 -134777975 - MIR SINE MIR -109 153 14 603 274 91 20 chr11 16005918 16006115 -134777438 + L2 LINE L2 2766 2976 -338 198 326 144 15 chr11 16006087 16006219 -134777334 + L2 LINE L2 3165 3313 0 * 410 281 177 12 chr11 16006258 16006422 -134777131 + L3 LINE CR1 1315 1505 -72 381 101 32 9 chr11 16006436 16006513 -134777040 + L1P4 LINE L1 5651 5726 -429 287 277 24 12 chr11 16006971 16007054 -134776499 + L2 LINE L2 3226 3309 -4 5164 126 40 9 chr11 16007212 16008185 -134775368 + L1PA16 LINE L1 5167 6166 0 261 326 54 47 chr11 16009203 16009332 -134774221 - L2 LINE L2 -208 3064 2935 748 319 55 42 chr11 16009364 16009614 -134773939 + MLT1K LTR MaLR 27 285 -303 441 50 0 0 chr11 16009614 16009674 -134773879 + (TG)n Simple_repeat Simple_repeat 1 60 0 748 319 55 42 chr11 16009674 16009808 -134773745 + MLT1K LTR MaLR 285 416 -172 254 278 67 0 chr11 16010039 16010129 -134773424 - MIR SINE MIR -58 150 55 24 0 0 0 chr11 16010475 16010499 -134773054 + AT_rich Low_complexity Low_complexity 1 24 0 205 349 87 24 chr11 16011374 16011500 -134772053 - L2 LINE L2 0 3272 3139 801 290 49 22 chr11 16011551 16011964 -134771589 + LTR33 LTR ERVL 30 500 -21 184 241 121 17 chr11 16012693 16012751 -134770802 + MIR SINE MIR 91 154 -108 753 167 0 0 chr11 16012757 16012871 -134770682 + Tigger4(Zombi) DNA MER2_type 7 120 -2611 * 1033 129 48 71 chr11 16012870 16013050 -134770503 + Tigger4(Zombi) DNA MER2_type 2523 2699 -32 1965 113 45 10 chr11 16013050 16013341 -134770212 - AluSx SINE Alu -7 305 5 1033 129 48 71 chr11 16013341 16013370 -134770183 + Tigger4(Zombi) DNA MER2_type 2699 2727 -4 1377 230 65 17 chr11 16013386 16013738 -134769815 - MLT1A2 LTR MaLR -1 373 5 1004 185 25 20 chr11 16013795 16013995 -134769558 - MLT1A1 LTR MaLR -164 201 1 348 301 0 62 chr11 16014092 16014205 -134769348 - L1 LINE L1 -2445 3701 3596 1963 136 11 3 chr11 16014374 16014661 -134768892 - AluSx SINE Alu -23 289 1 2830 150 20 24 chr11 16014662 16014871 -134768682 - L1MC3 LINE L1 -8 8195 7987 1305 194 38 115 chr11 16014871 16015262 -134768291 + MLT1A1 LTR MaLR 1 361 -4 2830 150 20 24 chr11 16015262 16015606 -134767947 - L1MC3 LINE L1 -216 7987 7644 * 5258 183 22 10 chr11 16015588 16016624 -134766929 - L1MC3 LINE L1 -1420 6783 5735 3826 213 55 36 chr11 16016625 16016764 -134766789 - L1MC3 LINE L1 -4740 1824 1689 2067 142 7 3 chr11 16016764 16017073 -134766480 - AluSx SINE Alu 0 312 3 3826 213 55 36 chr11 16017073 16018713 -134764840 - L1MC3 LINE L1 -4875 1689 1 874 287 131 55 chr11 16018819 16019776 -134763777 - L1 LINE L1 -2803 3343 2315 26 30 0 0 chr11 16019890 16019923 -134763630 + AT_rich Low_complexity Low_complexity 1 33 0 300 319 13 7 chr11 16020491 16020629 -134762924 - HAL1b LINE L1 -809 1611 397 489 275 93 0 chr11 16020692 16020885 -134762668 - HAL1 LINE L1 -1 2506 2296 * 722 285 71 40 chr11 16020878 16021232 -134762321 - HAL1 LINE L1 -2141 366 2 414 306 61 45 chr11 16021385 16021630 -134761923 - HAL1 LINE L1 -1229 1278 1030 1432 158 24 34 chr11 16021638 16021929 -134761624 - AluJo SINE Alu -19 293 6 1199 197 47 101 chr11 16022490 16022875 -134760678 + MLT1A1 LTR MaLR 1 364 -1 4149 161 15 3 chr11 16023232 16023944 -134759609 + L1MC1 LINE L1 5596 6316 -17 810 124 22 22 chr11 16024508 16024686 -134758867 + GA-rich Low_complexity Low_complexity 1 178 0 234 225 0 0 chr11 16024686 16024726 -134758827 + polypurine Low_complexity Low_complexity 2 41 0 291 320 84 25 chr11 16026104 16026306 -134757247 - MIR SINE MIR -37 225 17 4823 108 90 61 chr11 16026363 16027747 -134755806 + pTR5 LTR ERV1 742 2295 -143 180 319 28 28 chr11 16028240 16028312 -134755241 + MIR SINE MIR 178 249 -13 372 382 164 0 chr11 16028322 16028542 -134755011 - L3 LINE CR1 -1039 538 283 328 303 42 8 chr11 16029892 16030011 -134753542 + MIR3 SINE MIR 85 207 -1 186 314 39 0 chr11 16030189 16030240 -134753313 + L2 LINE L2 3250 3302 -11 210 91 0 0 chr11 16031329 16031362 -134752191 + (T)n Simple_repeat Simple_repeat 1 33 0 201 88 0 59 chr11 16032135 16032169 -134751384 + (TTCTCC)n Simple_repeat Simple_repeat 4 35 0 272 293 49 57 chr11 16032437 16032560 -134750993 - MIR SINE MIR -50 212 91 226 231 22 22 chr11 16032844 16032935 -134750618 + CT-rich Low_complexity Low_complexity 3 93 0 254 343 113 31 chr11 16032937 16033229 -134750324 - L2 LINE L2 -1 3271 2956 2343 61 0 3 chr11 16033266 16033559 -134749994 - AluY SINE Alu -19 292 1 1684 78 13 26 chr11 16033995 16034227 -134749326 + MER30 DNA MER1_type 2 230 0 543 299 149 0 chr11 16034401 16034622 -134748931 + MIR SINE MIR 3 256 -6 228 227 34 0 chr11 16034627 16034715 -134748838 + (TAG)n Simple_repeat Simple_repeat 1 91 0 216 274 0 0 chr11 16034739 16034790 -134748763 + (TAG)n Simple_repeat Simple_repeat 3 53 0 235 321 28 57 chr11 16035121 16035227 -134748326 + L2 LINE L2 3167 3269 -3 1580 182 179 3 chr11 16035865 16036195 -134747358 + MSTD LTR MaLR 1 388 -8 271 308 20 55 chr11 16036692 16036838 -134746715 - MIR3 SINE MIR -65 143 3 231 36 0 0 chr11 16037039 16037067 -134746486 + (TG)n Simple_repeat Simple_repeat 2 29 0 185 183 17 0 chr11 16037069 16037129 -134746424 + (TA)n Simple_repeat Simple_repeat 1 61 0 21 89 0 0 chr11 16037142 16037198 -134746355 + AT_rich Low_complexity Low_complexity 1 56 0 294 365 47 0 chr11 16037241 16037389 -134746164 + MIR SINE MIR 46 200 -62 249 301 83 15 chr11 16037390 16037523 -134746030 - MLT1L LTR MaLR 0 615 474 327 266 73 94 chr11 16037579 16037771 -134745782 - MLT1J LTR MaLR -216 295 108 2370 113 132 5 chr11 16038595 16038975 -134744578 + MSTA LTR MaLR 1 428 0 230 299 46 11 chr11 16040567 16040654 -134742899 - MIR3 SINE MIR -49 159 70 401 216 144 0 chr11 16041155 16041266 -134742287 - MIR SINE MIR -69 193 67 372 273 34 68 chr11 16041614 16041752 -134741801 + MIR SINE MIR 77 209 -53 2024 123 7 0 chr11 16041752 16042045 -134741508 + AluSx SINE Alu 1 295 -17 372 273 34 68 chr11 16042045 16042082 -134741471 + MIR SINE MIR 209 246 -16 389 263 61 18 chr11 16043066 16043180 -134740373 - MIR SINE MIR -112 150 32 617 224 26 13 chr11 16043489 16043641 -134739912 - MIR SINE MIR -31 231 78 1864 81 19 99 chr11 16043731 16044054 -134739499 - AluSc SINE Alu -12 297 1 224 364 67 51 chr11 16044525 16044778 -134738775 + L2 LINE L2 2709 2965 -349 282 247 194 0 chr11 16045038 16045131 -134738422 + L2 LINE L2 3203 3313 0 317 343 37 9 chr11 16045820 16045928 -134737625 + MIR3 SINE MIR 45 155 -53 702 315 81 0 chr11 16046035 16046270 -134737283 + MIR SINE MIR 9 262 0 1459 243 102 15 chr11 16046392 16046870 -134736683 - MLT2B1 LTR ERVL 0 520 1 330 132 0 0 chr11 16046982 16047035 -134736518 + (T)n Simple_repeat Simple_repeat 1 53 0 1935 129 0 3 chr11 16047082 16047400 -134736153 + AluSx SINE Alu 1 317 0 489 255 27 40 chr11 16047446 16047595 -134735958 - MIR SINE MIR -110 152 6 226 215 25 51 chr11 16048234 16048313 -134735240 + LTR67 LTR ERVL 481 557 0 614 282 110 5 chr11 16048703 16048912 -134734641 - L2 LINE L2 -541 2773 2543 184 360 48 27 chr11 16050499 16050646 -134732907 - MIR3 SINE MIR -23 185 36 852 196 18 18 chr11 16051014 16051177 -134732376 - FRAM SINE Alu 0 166 4 351 179 64 0 chr11 16051511 16051589 -134731964 + L2 LINE L2 3190 3272 0 246 32 0 0 chr11 16051595 16051626 -134731927 + (CA)n Simple_repeat Simple_repeat 2 32 0 505 217 40 33 chr11 16051982 16052134 -134731419 + LTR67 LTR ERVL 405 557 0 21 0 0 0 chr11 16052764 16052785 -134730768 + AT_rich Low_complexity Low_complexity 1 21 0 381 302 165 19 chr11 16053078 16053290 -134730263 - MIR SINE MIR 0 262 20 274 274 11 96 chr11 16053267 16053406 -134730147 + MIR3 SINE MIR 48 176 -32 * 384 252 38 114 chr11 16053796 16053865 -134729688 - MIR SINE MIR -47 215 142 2170 94 3 0 chr11 16053865 16054163 -134729390 + AluY SINE Alu 1 299 -12 384 252 38 114 chr11 16054163 16054303 -134729250 - MIR SINE MIR -120 142 22 666 224 18 30 chr11 16054571 16054736 -134728817 - MIR SINE MIR -13 249 87 320 273 207 0 chr11 16054831 16054952 -134728601 + MIR SINE MIR 47 192 -70 307 296 12 0 chr11 16055947 16056028 -134727525 - L2 LINE L2 -7 3265 3184 798 225 67 14 chr11 16056065 16056311 -134727242 + L2 LINE L2 2670 2959 -355 339 303 49 31 chr11 16057732 16057894 -134725659 + L2 LINE L2 2681 2845 -469 420 223 18 27 chr11 16057909 16058021 -134725532 + MER5B DNA MER1_type 5 115 -63 352 233 68 61 chr11 16058365 16058528 -134725025 - MLT1H LTR MaLR -328 221 58 287 274 49 59 chr11 16058570 16058672 -134724881 + MIR3 SINE MIR 85 185 -23 443 289 112 7 chr11 16059584 16059736 -134723817 - MIR3 SINE MIR -26 182 15 414 228 299 11 chr11 16059748 16059932 -134723621 - LTR16A LTR ERVL -17 433 197 181 325 38 25 chr11 16060562 16060642 -134722911 + MIR SINE MIR 27 107 -101 692 224 229 10 chr11 16060652 16061003 -134722550 - MER57B LTR ERV1 -4 399 1 201 333 48 0 chr11 16061096 16061201 -134722352 - MIR SINE MIR -31 231 122 540 0 0 0 chr11 16061470 16061530 -134722023 + (CA)n Simple_repeat Simple_repeat 2 61 0 236 315 10 140 chr11 16061764 16061964 -134721589 - L2 LINE L2 -107 3165 2992 552 284 99 25 chr11 16062051 16062252 -134721301 - MIR SINE MIR -27 235 20 355 270 93 83 chr11 16062735 16062939 -134720614 + MIR SINE MIR 51 256 -6 2046 106 41 0 chr11 16063387 16063679 -134719874 - AluSg SINE Alu -6 304 1 460 310 76 27 chr11 16064009 16064193 -134719360 + MIR SINE MIR 21 213 -49 243 277 48 36 chr11 16064304 16064387 -134719166 + MIR SINE MIR 169 252 -10 199 256 23 0 chr11 16064830 16064873 -134718680 + MIR SINE MIR 32 75 -133 387 321 82 68 chr11 16064969 16065336 -134718217 + L2 LINE L2 2901 3272 0 617 272 41 24 chr11 16066144 16066313 -134717240 + MIR SINE MIR 80 251 -11 401 294 37 9 chr11 16067575 16067684 -134715869 - MIR SINE MIR -143 119 8 252 0 0 0 chr11 16069163 16069191 -134714362 + (T)n Simple_repeat Simple_repeat 1 28 0 350 321 29 29 chr11 16069597 16069737 -134713816 - MIR SINE MIR -110 152 13 374 332 82 38 chr11 16070259 16070599 -134712954 + L2 LINE L2 2910 3264 -49 261 253 232 0 chr11 16071471 16071566 -134711987 + MIR SINE MIR 9 125 -137 764 254 0 0 chr11 16071581 16071754 -134711799 + MER45A DNA AcHobo 5 177 -1 449 259 28 21 chr11 16073244 16073387 -134710166 + MIR3 SINE MIR 2 145 -63 415 293 8 0 chr11 16073932 16074065 -134709488 - MIR SINE MIR -5 257 124 454 193 44 26 chr11 16074271 16074385 -134709168 + MER103 DNA DNA 40 155 -11 34 0 0 0 chr11 16074424 16074458 -134709095 + AT_rich Low_complexity Low_complexity 1 34 0 228 301 68 10 chr11 16074463 16074566 -134708987 - MIR SINE MIR -64 144 36 2532 143 10 14 chr11 16074772 16075185 -134708368 - MLT2D LTR ERVL 0 414 4 486 227 0 0 chr11 16075549 16075646 -134707907 + MER5A DNA MER1_type 9 105 -84 687 304 142 18 chr11 16076237 16076688 -134706865 + L2 LINE L2 2807 3313 0 278 320 64 8 chr11 16076688 16076813 -134706740 + L2 LINE L2 3112 3243 -29 1211 163 5 0 chr11 16077060 16077256 -134706297 + MER2 DNA MER2_type 13 209 -136 27 29 0 0 chr11 16077259 16077293 -134706260 + AT_rich Low_complexity Low_complexity 1 34 0 249 351 13 0 chr11 16079836 16079913 -134703640 - L2 LINE L2 -86 3186 3109 232 289 48 12 chr11 16080375 16080458 -134703095 + MIR SINE MIR 122 207 -55 219 280 167 15 chr11 16081183 16081315 -134702238 + MIR SINE MIR 41 192 -70 338 216 12 154 chr11 16081445 16081607 -134701946 + MIR SINE MIR 124 262 0 234 343 101 18 chr11 16082821 16082990 -134700563 + LTR16C LTR ERVL 299 481 -10 205 312 11 11 chr11 16083556 16083649 -134699904 + MIR SINE MIR 60 152 -110 272 276 92 18 chr11 16083810 16084004 -134699549 - MIR SINE MIR -54 208 2 233 296 49 0 chr11 16085017 16085098 -134698455 + L2 LINE L2 3187 3271 -1 286 246 86 102 chr11 16085421 16085608 -134697945 + MER117 DNA MER1_type 9 192 -5 350 300 63 36 chr11 16085640 16085863 -134697690 + L2 LINE L2 2617 2845 -469 343 343 41 14 chr11 16086106 16086252 -134697301 + L2 LINE L2 3123 3272 0 450 281 163 0 chr11 16087198 16087351 -134696202 - MER5A DNA MER1_type -1 188 11 251 290 20 10 chr11 16087571 16087671 -134695882 - Charlie2a DNA MER1_type 0 2862 2762 292 210 200 40 chr11 16087749 16087849 -134695704 + L2 LINE L2 3189 3304 -9 538 196 30 89 chr11 16087849 16088017 -134695536 - Charlie2a DNA MER1_type -1978 884 727 325 306 11 59 chr11 16089659 16089845 -134693708 - MIR3 SINE MIR -13 195 19 893 245 55 4 chr11 16090648 16090885 -134692668 - MIR SINE MIR 0 262 14 450 315 12 12 chr11 16090944 16091109 -134692444 - MER5A DNA MER1_type -2 187 23 568 185 65 0 chr11 16091312 16091420 -134692133 + MER94 DNA DNA 3 117 -17 1097 272 44 21 chr11 16091497 16091835 -134691718 + LTR16C LTR ERVL 126 471 -20 299 229 133 0 chr11 16091848 16091931 -134691622 + MIR SINE MIR 62 155 -107 189 171 0 0 chr11 16093323 16093358 -134690195 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1405 240 49 49 chr11 16093450 16094029 -134689524 - MLT1D LTR MaLR 0 626 1 236 322 39 15 chr11 16094137 16094342 -134689211 - L1ME3A LINE L1 -230 5940 5731 1191 304 53 15 chr11 16094969 16095646 -134687907 + L2 LINE L2 2511 3299 -14 459 252 150 0 chr11 16095690 16095817 -134687736 + MER5B DNA MER1_type 1 146 -32 227 328 33 25 chr11 16095864 16095986 -134687567 + MLT1K LTR MaLR 227 349 -239 373 173 40 40 chr11 16096170 16096245 -134687308 + MLT1K LTR MaLR 513 587 -1 180 0 0 0 chr11 16097816 16097836 -134685717 + (GGGAA)n Simple_repeat Simple_repeat 3 22 0 307 301 133 0 chr11 16098644 16098757 -134684796 + MLT1H LTR MaLR 404 531 -18 2175 112 3 13 chr11 16099824 16100128 -134683425 - AluSx SINE Alu -11 301 1 550 308 35 13 chr11 16100198 16100425 -134683128 + MIR SINE MIR 20 251 -11 307 365 86 27 chr11 16100772 16100994 -134682559 - MIR SINE MIR -6 256 22 801 264 67 103 chr11 16101087 16101313 -134682240 + MLT1J LTR MaLR 9 242 -269 1758 75 0 0 chr11 16101313 16101525 -134682028 - AluSq SINE Alu -10 303 92 801 264 67 103 chr11 16101525 16101820 -134681733 + MLT1J LTR MaLR 242 511 0 606 293 11 11 chr11 16101830 16102021 -134681532 - MIR SINE MIR -70 192 2 398 271 222 10 chr11 16103075 16103278 -134680275 + MIR SINE MIR 2 247 -15 272 298 0 60 chr11 16103491 16103575 -134679978 + MIR SINE MIR 21 99 -163 2169 137 6 3 chr11 16103639 16103960 -134679593 + MER7A DNA MER2_type 22 341 -5 899 209 47 21 chr11 16104129 16104320 -134679233 - MLT1H LTR MaLR -18 531 336 205 241 19 0 chr11 16104770 16104824 -134678729 + MIR3 SINE MIR 153 207 -1 464 278 46 33 chr11 16104881 16105032 -134678521 + L3 LINE CR1 1328 1480 -97 332 59 20 0 chr11 16105184 16105235 -134678318 + (TA)n Simple_repeat Simple_repeat 2 53 0 282 294 0 0 chr11 16105577 16105662 -134677891 + MIR SINE MIR 177 261 -1 1590 164 84 4 chr11 16106515 16106625 -134676928 + AluJo SINE Alu 1 101 -211 1010 40 40 7 chr11 16106625 16106775 -134676778 + (GAAA)n Simple_repeat Simple_repeat 2 156 0 1590 164 84 4 chr11 16106775 16106938 -134676615 + AluJo SINE Alu 101 296 -16 423 263 119 0 chr11 16107610 16107728 -134675825 + MIR SINE MIR 101 232 -30 183 80 0 0 chr11 16107737 16107762 -134675791 + (TAA)n Simple_repeat Simple_repeat 1 25 0 275 270 33 79 chr11 16107770 16107922 -134675631 + L2 LINE L2 3122 3266 -6 494 286 83 56 chr11 16109151 16109403 -134674150 - MIR SINE MIR -3 259 1 204 211 197 0 chr11 16109456 16109532 -134674021 + MIR SINE MIR 56 146 -116 219 265 0 121 chr11 16109606 16109689 -134673864 + L2 LINE L2 3168 3240 -32 195 315 77 33 chr11 16110736 16110917 -134672636 + MIR SINE MIR 72 260 -2 243 296 102 85 chr11 16111128 16111530 -134672023 + L2 LINE L2 2826 3234 -38 464 263 11 0 chr11 16111727 16111822 -134671731 + MER69 DNA AcHobo 1 96 -1130 873 163 0 0 chr11 16111827 16111962 -134671591 - AluJb SINE Alu -23 289 155 350 253 22 0 chr11 16111964 16112055 -134671498 + MER69 DNA AcHobo 2434 2526 0 188 352 0 0 chr11 16112070 16112124 -134671429 + MER5A DNA MER1_type 135 188 -1 377 233 134 81 chr11 16112129 16112301 -134671252 + MER5A DNA MER1_type 9 189 0 226 308 149 51 chr11 16112319 16112514 -134671039 - L2 LINE L2 -193 3079 2866 310 287 10 0 chr11 16113366 16113467 -134670086 - MIR SINE MIR -113 149 48 322 271 49 8 chr11 16113616 16113738 -134669815 - MIR3 SINE MIR 0 208 82 332 279 0 10 chr11 16113961 16114065 -134669488 + GA-rich Low_complexity Low_complexity 4 106 0 463 116 12 12 chr11 16114065 16114151 -134669402 + (GGAA)n Simple_repeat Simple_repeat 2 87 0 828 261 9 5 chr11 16114151 16114373 -134669180 - MIR SINE MIR -9 253 31 274 305 48 72 chr11 16114606 16114816 -134668737 + MIR3 SINE MIR 19 221 -41 580 264 5 43 chr11 16115070 16115278 -134668275 - L2 LINE L2 0 3313 3114 227 341 52 2 chr11 16115577 16115712 -134667841 - MIR SINE MIR -63 145 14 308 325 68 25 chr11 16115748 16115911 -134667642 + L2 LINE L2 2823 2992 -280 183 80 0 0 chr11 16115963 16115988 -134667565 + (TTA)n Simple_repeat Simple_repeat 1 25 0 1847 155 0 4 chr11 16115995 16116273 -134667280 - AluSx SINE Alu -35 277 1 559 258 107 25 chr11 16116273 16116432 -134667121 - L1ME1 LINE L1 -10 6156 5985 616 203 95 86 chr11 16116480 16116795 -134666758 + L2 LINE L2 2996 3313 0 526 302 0 47 chr11 16116982 16117194 -134666359 - MIR SINE MIR -23 239 38 274 313 30 8 chr11 16118074 16118205 -134665348 - MIR SINE MIR -122 140 7 403 179 53 21 chr11 16118627 16118722 -134664831 - MIR SINE MIR -68 140 43 22 0 0 0 chr11 16119261 16119283 -134664270 + AT_rich Low_complexity Low_complexity 1 22 0 276 100 0 0 chr11 16119437 16119477 -134664076 + (GA)n Simple_repeat Simple_repeat 2 41 0 213 238 0 0 chr11 16119823 16119924 -134663629 + GA-rich Low_complexity Low_complexity 2 102 0 216 0 0 0 chr11 16120127 16120151 -134663402 + (CA)n Simple_repeat Simple_repeat 2 25 0 225 65 0 0 chr11 16120236 16120267 -134663286 + (CA)n Simple_repeat Simple_repeat 2 32 0 38 0 0 0 chr11 16120495 16120533 -134663020 + AT_rich Low_complexity Low_complexity 1 38 0 1797 141 53 3 chr11 16120539 16120823 -134662730 + AluJb SINE Alu 1 298 -14 511 358 4 35 chr11 16121021 16121253 -134662300 - MIR SINE MIR -10 252 28 440 317 100 6 chr11 16121263 16121443 -134662110 + MIR SINE MIR 52 248 -14 346 231 157 8 chr11 16121561 16121682 -134661871 + MIR SINE MIR 117 255 -7 264 274 99 9 chr11 16122180 16122376 -134661177 + MIR3 SINE MIR 9 221 -41 * 544 270 117 6 chr11 16122364 16122527 -134661026 + MIR SINE MIR 5 185 -77 234 270 44 88 chr11 16122701 16122838 -134660715 - L2 LINE L2 -235 3037 2907 2119 149 135 50 chr11 16122846 16123328 -134660225 - MER44D DNA MER2_type 0 605 28 920 189 77 36 chr11 16123328 16123576 -134659977 - MSTD LTR MaLR -138 258 1 468 266 68 23 chr11 16123931 16124108 -134659445 - MIR SINE MIR -72 190 6 384 316 59 20 chr11 16125249 16125401 -134658152 - MIR3 SINE MIR -14 194 37 1070 130 73 53 chr11 16126193 16126439 -134657114 + ORSL DNA AcHobo 12 262 -13 2344 206 106 17 chr11 16126939 16127073 -134656480 + L1ME3A LINE L1 5509 5630 -540 355 218 26 0 chr11 16127073 16127151 -134656402 + MER116 DNA Mariner 1 80 0 2344 206 106 17 chr11 16127151 16127619 -134655934 + L1ME3A LINE L1 5630 6165 -5 257 356 17 39 chr11 16127763 16127943 -134655610 - MIR SINE MIR -66 196 21 510 297 34 0 chr11 16128922 16129070 -134654483 + MIR3 SINE MIR 41 193 -15 225 328 228 18 chr11 16129630 16129972 -134653581 + L2 LINE L2 2564 2977 -337 332 259 98 9 chr11 16129991 16130103 -134653450 + L2 LINE L2 3192 3313 0 222 235 0 59 chr11 16130367 16130435 -134653118 + L2 LINE L2 3208 3271 -1 187 400 49 27 chr11 16130478 16130663 -134652890 + L2 LINE L2 2979 3167 -105 202 216 120 96 chr11 16131380 16131505 -134652048 + MIR SINE MIR 1 129 -79 307 265 0 48 chr11 16132013 16132096 -134651457 - L2 LINE L2 0 3313 3235 356 333 103 12 chr11 16132345 16132510 -134651043 + L3 LINE CR1 1316 1495 -82 456 320 39 26 chr11 16133032 16133185 -134650368 - L2 LINE L2 -2 3270 3116 1825 149 33 0 chr11 16133656 16133968 -134649585 + AluSx SINE Alu 1 321 0 269 254 0 0 chr11 16135121 16135180 -134648373 + MLT1I LTR MaLR 344 402 -7 210 250 0 0 chr11 16135181 16135221 -134648332 - L2 LINE L2 -23 3249 3210 681 281 201 16 chr11 16135641 16136029 -134647524 + L2 LINE L2 2233 2692 -622 263 299 122 41 chr11 16136209 16136430 -134647123 + L2 LINE L2 2952 3190 -123 2363 92 3 0 chr11 16136735 16137039 -134646514 + AluSp SINE Alu 3 307 -6 726 271 89 14 chr11 16137049 16137263 -134646290 - MIR SINE MIR -30 232 3 437 282 20 34 chr11 16137408 16137557 -134645996 + MIR3 SINE MIR 28 174 -34 1616 138 88 77 chr11 16140152 16140515 -134643038 + MLT1B LTR MaLR 5 371 -19 230 328 0 16 chr11 16140564 16140628 -134642925 + L2 LINE L2 3205 3267 -5 273 337 0 0 chr11 16141980 16142078 -134641475 + MER117 DNA MER1_type 67 164 -33 294 301 88 22 chr11 16142674 16142810 -134640743 - MIR SINE MIR -9 253 109 1217 280 47 39 chr11 16143104 16143726 -134639827 + L1ME1 LINE L1 909 1535 -5008 * 9026 252 57 21 chr11 16143722 16147464 -134636089 + L1ME1 LINE L1 1824 5700 -840 2904 244 69 10 chr11 16147513 16148337 -134635216 + L1ME1 LINE L1 5687 6559 -1 6735 245 49 30 chr11 16148337 16150870 -134632683 + L1ME2 LINE L1 3013 5591 -573 1210 226 58 16 chr11 16150868 16151177 -134632376 + L1ME2 LINE L1 5827 6148 -16 * 2580 124 13 5 chr11 16151798 16152170 -134631383 + THE1C LTR MaLR 1 375 0 219 345 56 65 chr11 16152349 16152581 -134630972 - MIR SINE MIR -23 239 10 303 308 189 16 chr11 16152672 16152857 -134630696 - MIR SINE MIR -10 252 36 2333 174 52 12 chr11 16153096 16153312 -134630241 - MSTB LTR MaLR -2 424 218 287 0 0 50 chr11 16153312 16153352 -134630201 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 4991 65 35 0 chr11 16153352 16153979 -134629574 - SVA Other Other -23 1363 715 2333 174 52 12 chr11 16153979 16154168 -134629385 - MSTB LTR MaLR -207 219 2 1907 135 24 0 chr11 16154342 16154631 -134628922 - AluSg SINE Alu -14 296 1 653 284 100 22 chr11 16154769 16155040 -134628513 + L2 LINE L2 3020 3311 -2 740 297 39 3 chr11 16155213 16155618 -134627935 + LTR33 LTR ERVL 34 475 -46 656 191 0 50 chr11 16156387 16156528 -134627025 + MIR SINE MIR 40 173 -89 899 291 95 7 chr11 16156569 16156875 -134626678 + MLT1I LTR MaLR 77 409 0 358 225 45 22 chr11 16156875 16156964 -134626589 + MIR SINE MIR 171 261 -1 2588 132 57 21 chr11 16156997 16157415 -134626138 + Tigger2a DNA MER2_type 2 434 0 1100 323 80 30 chr11 16158566 16158697 -134624856 + ERVL LTR ERVL 4628 4751 -1013 1659 229 90 13 chr11 16158697 16159164 -134624389 - MLT1D LTR MaLR 0 505 3 1100 323 80 30 chr11 16159164 16159695 -134623858 + ERVL LTR ERVL 4751 5323 -441 773 281 98 40 chr11 16159808 16160207 -134623346 + LTR16A LTR ERVL 29 450 0 2328 103 3 0 chr11 16161024 16161334 -134622219 + AluSx SINE Alu 1 311 -1 627 306 49 20 chr11 16161741 16161986 -134621567 - MIR SINE MIR -3 259 8 479 248 23 47 chr11 16162487 16162616 -134620937 - MIR SINE MIR -58 204 79 314 299 102 19 chr11 16162784 16162941 -134620612 - MIR SINE MIR -14 248 79 285 299 52 26 chr11 16163107 16163261 -134620292 - L2 LINE L2 -217 3055 2898 348 330 82 74 chr11 16163795 16164343 -134619210 - L2 LINE L2 -10 3262 2709 532 221 0 0 chr11 16164506 16164610 -134618943 - MIR SINE MIR -2 260 157 188 250 0 0 chr11 16164639 16164675 -134618878 - MIR SINE MIR -195 67 32 475 265 215 45 chr11 16164717 16164940 -134618613 - MIR SINE MIR 0 262 2 215 349 0 15 chr11 16165639 16165771 -134617782 + (CA)n Simple_repeat Simple_repeat 1 130 0 * 285 302 11 28 chr11 16165695 16165874 -134617679 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 471 270 31 25 chr11 16165975 16166134 -134617419 + L3b LINE CR1 1244 1403 -180 22 80 0 0 chr11 16166239 16166289 -134617264 + AT_rich Low_complexity Low_complexity 1 50 0 217 226 0 19 chr11 16166497 16166550 -134617003 + L2 LINE L2 3016 3067 -205 1035 276 41 24 chr11 16166636 16167002 -134616551 + LTR16A LTR ERVL 74 443 -7 1149 267 115 33 chr11 16167042 16167812 -134615741 + L2 LINE L2 2467 3313 0 240 341 63 16 chr11 16167812 16167938 -134615615 + L2 LINE L2 3112 3243 -29 1241 168 0 0 chr11 16168186 16168383 -134615170 + MER2 DNA MER2_type 13 209 -136 27 29 0 0 chr11 16168386 16168420 -134615133 + AT_rich Low_complexity Low_complexity 1 34 0 247 296 61 10 chr11 16170915 16171013 -134612540 + L2 LINE L2 2606 2708 -606 386 238 0 0 chr11 16171064 16171148 -134612405 + MIR SINE MIR 49 132 -130 208 296 19 56 chr11 16172185 16172293 -134611260 + MIR SINE MIR 104 207 -55 529 225 0 50 chr11 16172384 16172504 -134611049 + MER81 DNA DNA 1 114 0 2243 127 22 55 chr11 16172530 16172933 -134610620 + MLT1B LTR MaLR 1 390 0 537 199 20 53 chr11 16172985 16173136 -134610417 - MIR SINE MIR -56 206 61 183 80 0 0 chr11 16173415 16173440 -134610113 + (GGGAA)n Simple_repeat Simple_repeat 3 27 0 2357 141 33 5 chr11 16173443 16173834 -134609719 + MER57A LTR ERV1 1 402 -1 252 255 0 0 chr11 16173938 16173989 -134609564 - Zaphod DNA AcHobo -1 4030 3980 1541 209 57 9 chr11 16174004 16174335 -134609218 + MLT1A1 LTR MaLR 19 365 0 323 303 8 8 chr11 16174352 16174474 -134609079 - MER115 DNA AcHobo -48 645 524 203 352 152 25 chr11 16174867 16175182 -134608371 - L2 LINE L2 -1 3271 2917 189 147 0 0 chr11 16175483 16175517 -134608036 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1148 258 115 32 chr11 16176575 16177044 -134606509 + MLT1J LTR MaLR 1 508 -3 257 324 81 27 chr11 16177179 16177327 -134606226 - L2 LINE L2 0 3272 3117 299 279 48 10 chr11 16178571 16178675 -134604878 - MIR3 SINE MIR -19 189 82 295 280 19 28 chr11 16179556 16179663 -134603890 - L1M3d LINE L1 -5780 111 6 771 165 0 15 chr11 16179688 16179821 -134603732 + FLAM_C SINE Alu 2 132 -1 2308 98 0 10 chr11 16179964 16180261 -134603292 + AluSx SINE Alu 1 294 -18 1195 159 57 18 chr11 16180560 16180786 -134602767 - MLT1A1 LTR MaLR -5 360 126 1322 190 261 8 chr11 16180786 16181110 -134602443 + MSTB LTR MaLR 1 434 -23 180 0 0 0 chr11 16181228 16181248 -134602305 + (T)n Simple_repeat Simple_repeat 1 20 0 2263 83 17 0 chr11 16181294 16181583 -134601970 - AluY SINE Alu -17 294 1 218 246 16 16 chr11 16182007 16182068 -134601485 - L2 LINE L2 -22 3291 3231 201 346 13 0 chr11 16182495 16182573 -134600980 + MIR SINE MIR 183 261 -1 265 302 62 10 chr11 16182866 16182962 -134600591 - L2 LINE L2 -3 3269 3169 269 324 0 29 chr11 16183268 16183370 -134600183 + MLT1H LTR MaLR 162 260 -289 342 264 169 20 chr11 16185894 16186095 -134597458 - L3 LINE CR1 -4 1573 1343 515 274 53 32 chr11 16187518 16187708 -134595845 - L3 LINE CR1 -61 1516 1323 1079 258 69 52 chr11 16188140 16188799 -134594754 + L2 LINE L2 2649 3313 0 25 0 0 0 chr11 16188968 16188993 -134594560 + AT_rich Low_complexity Low_complexity 1 25 0 363 254 0 84 chr11 16189336 16189365 -134594188 + MIR SINE MIR 108 138 -124 1126 174 92 132 chr11 16189365 16189745 -134593808 - MLT1A1 LTR MaLR 0 365 1 363 254 0 84 chr11 16189745 16189857 -134593696 + MIR SINE MIR 138 237 -25 286 159 16 48 chr11 16190233 16190296 -134593257 + L2 LINE L2 3189 3249 -64 1094 285 117 3 chr11 16190419 16190777 -134592776 - LTR16A LTR ERVL 0 450 52 25 51 0 0 chr11 16191240 16191279 -134592274 + AT_rich Low_complexity Low_complexity 1 39 0 243 191 0 0 chr11 16191897 16191944 -134591609 + MIR SINE MIR 105 151 -111 231 362 91 19 chr11 16192081 16192346 -134591207 - L2 LINE L2 -351 2963 2680 207 246 0 0 chr11 16192428 16192446 -134591107 + (TTAG)n Simple_repeat Simple_repeat 4 21 -39 2242 172 32 3 chr11 16192446 16192823 -134590730 - MLT1B LTR MaLR -2 388 1 207 246 0 0 chr11 16192823 16192861 -134590692 + (TTAG)n Simple_repeat Simple_repeat 20 60 0 228 300 43 0 chr11 16192956 16193026 -134590527 + L2 LINE L2 3196 3268 -4 231 352 72 0 chr11 16193183 16193308 -134590245 - L3 LINE CR1 -53 1524 1391 377 306 55 47 chr11 16193322 16193577 -134589976 - MER102b DNA MER1_type -1 340 84 241 420 46 0 chr11 16193965 16194096 -134589457 + L2 LINE L2 3134 3270 -2 527 301 61 14 chr11 16194106 16194319 -134589234 - L3 LINE CR1 -274 1303 1081 395 312 48 32 chr11 16194381 16194567 -134588986 - MIR SINE MIR -67 195 7 21 0 0 0 chr11 16194990 16195011 -134588542 + AT_rich Low_complexity Low_complexity 1 21 0 373 320 0 0 chr11 16196123 16196251 -134587302 - L2 LINE L2 0 3313 3186 313 342 19 0 chr11 16196669 16196824 -134586729 + MER103 DNA DNA 3 160 -6 258 293 98 8 chr11 16196890 16197013 -134586540 - MIR3 SINE MIR -48 160 27 223 316 89 0 chr11 16197400 16197479 -134586074 - L3 LINE CR1 -98 1479 1394 258 280 140 32 chr11 16198532 16198689 -134584864 - MIR SINE MIR -15 193 20 279 265 12 12 chr11 16199030 16199113 -134584440 - MLT2E LTR ERVL -2 626 544 275 186 0 29 chr11 16199564 16199634 -134583919 + L1MA10 LINE L1 6266 6333 -1 251 254 70 0 chr11 16200873 16200944 -134582609 - LTR16C LTR ERVL -93 398 323 * 588 308 150 16 chr11 16200924 16201310 -134582243 + MLT1K LTR MaLR 144 581 -7 251 253 0 22 chr11 16201461 16201552 -134582001 + (CATATA)n Simple_repeat Simple_repeat 5 93 0 296 404 7 7 chr11 16202518 16202659 -134580894 + L2 LINE L2 3117 3257 -15 279 161 0 0 chr11 16202683 16202739 -134580814 + (TGGA)n Simple_repeat Simple_repeat 3 58 0 336 221 90 17 chr11 16202875 16203009 -134580544 - MIR SINE MIR -68 140 46 281 317 59 0 chr11 16203519 16203620 -134579933 - L3 LINE CR1 -15 1562 1456 266 297 135 32 chr11 16203660 16203845 -134579708 + MIR SINE MIR 52 255 -7 272 351 109 20 chr11 16203845 16204138 -134579415 - L3 LINE CR1 -165 1412 1094 455 310 41 18 chr11 16205915 16206086 -134577467 + MIR SINE MIR 72 246 -16 262 324 99 68 chr11 16206862 16207190 -134576363 + L2 LINE L2 2382 2737 -577 1220 214 21 18 chr11 16207190 16207470 -134576083 - AluJo SINE Alu -31 281 1 262 324 99 68 chr11 16207470 16207719 -134575834 + L2 LINE L2 2737 2977 -337 228 286 0 14 chr11 16207937 16208007 -134575546 + GA-rich Low_complexity Low_complexity 1 69 0 356 73 36 0 chr11 16208039 16208094 -134575459 + (GGGA)n Simple_repeat Simple_repeat 2 58 0 202 222 0 0 chr11 16208102 16208138 -134575415 + T-rich Low_complexity Low_complexity 4 39 0 225 146 0 0 chr11 16208208 16208256 -134575297 + (T)n Simple_repeat Simple_repeat 1 48 0 245 125 0 21 chr11 16208921 16208969 -134574584 + (TG)n Simple_repeat Simple_repeat 1 47 0 21 0 0 0 chr11 16209204 16209225 -134574328 + AT_rich Low_complexity Low_complexity 1 21 0 554 313 31 19 chr11 16209710 16209966 -134573587 + MIR SINE MIR 2 260 -2 473 286 17 40 chr11 16210254 16210429 -134573124 + MLT1J2 LTR MaLR 264 434 -16 188 354 100 8 chr11 16210986 16211116 -134572437 - L2 LINE L2 -180 3092 2951 521 181 118 8 chr11 16211890 16212017 -134571536 + MIR SINE MIR 51 191 -71 724 289 31 13 chr11 16212051 16212279 -134571274 - MIR SINE MIR -28 234 3 2223 129 21 46 chr11 16212386 16212534 -134571019 - THE1B LTR MaLR 0 364 214 1782 127 40 119 chr11 16212534 16212929 -134570624 - THE1B LTR MaLR 0 364 1 2223 129 21 46 chr11 16212929 16213153 -134570400 - THE1B LTR MaLR -150 214 1 1877 233 106 8 chr11 16213209 16213702 -134569851 - MLT1E LTR MaLR -2 591 51 554 221 33 0 chr11 16213733 16213855 -134569698 + MER94 DNA DNA 8 133 -1 868 172 6 45 chr11 16213933 16214090 -134569463 - MER8 DNA MER2_type 0 239 89 2134 173 51 15 chr11 16214891 16215302 -134568251 + MSTB LTR MaLR 1 426 0 354 332 101 62 chr11 16215677 16216187 -134567366 - L2 LINE L2 0 3272 2734 336 286 181 0 chr11 16216758 16216891 -134566662 - MIR SINE MIR -1 261 105 519 263 38 83 chr11 16217597 16217865 -134565688 - MIR SINE MIR -4 258 4 763 137 13 72 chr11 16219532 16219618 -134563935 + Charlie4 DNA MER1_type 1818 1893 -68 882 215 280 64 chr11 16219618 16220022 -134563531 + LTR16C LTR ERVL 1 491 0 763 137 13 72 chr11 16220022 16220088 -134563465 + Charlie4 DNA MER1_type 1893 1961 0 252 208 21 0 chr11 16220113 16220173 -134563380 - MIR SINE MIR -51 157 94 210 71 0 0 chr11 16220799 16220827 -134562726 + (TAA)n Simple_repeat Simple_repeat 1 28 0 321 208 104 40 chr11 16221511 16221636 -134561917 - L1MCa LINE L1 -4203 2223 2091 275 241 52 60 chr11 16221839 16221955 -134561598 - HAL1b LINE L1 -930 418 304 443 274 18 7 chr11 16223327 16223600 -134559953 + CT-rich Low_complexity Low_complexity 1 276 0 327 228 0 38 chr11 16223628 16223870 -134559683 + C-rich Low_complexity Low_complexity 1 232 0 4248 218 58 37 chr11 16224367 16226586 -134556967 - L1MCc LINE L1 -4326 2796 3 565 250 58 31 chr11 16227629 16227853 -134555700 + L2 LINE L2 3081 3310 -3 26 30 0 0 chr11 16227911 16227944 -134555609 + AT_rich Low_complexity Low_complexity 1 33 0 801 285 55 4 chr11 16227957 16228192 -134555361 - MIR SINE MIR -14 248 2 426 273 25 50 chr11 16228986 16229147 -134554406 + MER103 DNA DNA 6 162 -4 313 282 127 42 chr11 16230616 16230829 -134552724 + MIR SINE MIR 22 252 -10 532 309 18 18 chr11 16230864 16231029 -134552524 + MIR SINE MIR 1 165 -97 376 276 20 20 chr11 16231203 16231301 -134552252 + L1MEd LINE L1 434 531 -5588 234 202 0 121 chr11 16232028 16232127 -134551426 - LTR67 LTR ERVL 0 557 471 456 242 126 146 chr11 16232139 16232253 -134551300 + L1MEd LINE L1 104 219 -5986 858 165 0 0 chr11 16232253 16232386 -134551167 - FLAM_A SINE Alu 0 133 1 456 242 126 146 chr11 16232386 16233293 -134550260 + L1MEd LINE L1 219 1105 -5100 856 196 6 6 chr11 16233418 16233581 -134549972 - FRAM SINE Alu -13 163 1 295 308 13 31 chr11 16233583 16233742 -134549811 + L1MEd LINE L1 1554 1709 -4687 2195 123 0 0 chr11 16233746 16234046 -134549507 + AluSx SINE Alu 1 300 -12 295 99 37 25 chr11 16234297 16234378 -134549175 + (TA)n Simple_repeat Simple_repeat 1 82 0 332 263 58 74 chr11 16235283 16235648 -134547905 + L1MEd LINE L1 858 1216 -4903 3464 257 92 44 chr11 16235651 16236092 -134547461 + HAL1 LINE L1 4 422 -2085 817 198 105 6 chr11 16236092 16236264 -134547289 + MER5A DNA MER1_type 1 189 0 3464 257 92 44 chr11 16236264 16236281 -134547272 + HAL1 LINE L1 422 437 -2070 1745 171 4 0 chr11 16236281 16236556 -134546997 - AluSx SINE Alu -15 297 22 3464 257 92 44 chr11 16236556 16237581 -134545972 + HAL1 LINE L1 437 1559 -948 1043 266 91 44 chr11 16237633 16238353 -134545200 + HAL1 LINE L1 1651 2476 -31 378 269 73 59 chr11 16239149 16239435 -134544118 - LTR67 LTR ERVL -77 480 191 291 241 0 0 chr11 16239633 16239687 -134543866 + MIR SINE MIR 15 68 -194 * 710 269 137 74 chr11 16239685 16240079 -134543474 + L2 LINE L2 2895 3313 0 323 242 63 0 chr11 16240086 16240183 -134543370 + MIR SINE MIR 96 192 -63 512 328 65 5 chr11 16241322 16241532 -134542021 - MIR SINE MIR -35 227 7 246 32 0 0 chr11 16242256 16242287 -134541266 + (CA)n Simple_repeat Simple_repeat 2 32 0 813 252 14 14 chr11 16243243 16243453 -134540100 - MIR SINE MIR -1 261 52 320 374 47 26 chr11 16243476 16243666 -134539887 + L2 LINE L2 3073 3266 -6 368 368 12 6 chr11 16243728 16243899 -134539654 - MIR SINE MIR -14 248 77 441 333 80 51 chr11 16243969 16244636 -134538917 - L2 LINE L2 -171 3101 2405 186 71 0 0 chr11 16244877 16244905 -134538648 + (CA)n Simple_repeat Simple_repeat 1 28 0 324 200 0 0 chr11 16246758 16246813 -134536740 - L2 LINE L2 -8 3305 3251 203 297 9 126 chr11 16246849 16246960 -134536593 - L2 LINE L2 -15 3257 3160 515 270 29 1 chr11 16246989 16247138 -134536415 - MIR SINE MIR -65 143 20 514 269 71 39 chr11 16248233 16248415 -134535138 + MIR SINE MIR 24 211 -51 189 175 0 0 chr11 16248547 16248587 -134534966 + (TTA)n Simple_repeat Simple_repeat 2 41 0 182 271 85 0 chr11 16248887 16248946 -134534607 - L2 LINE L2 -1 3271 3208 585 155 0 42 chr11 16248995 16249137 -134534416 + (CATATA)n Simple_repeat Simple_repeat 6 141 0 291 274 36 12 chr11 16250064 16250148 -134533405 - MIR3 SINE MIR -12 196 111 182 333 23 46 chr11 16250176 16250263 -134533290 + L2 LINE L2 3178 3262 -10 376 262 107 16 chr11 16250569 16250691 -134532862 + L2 LINE L2 3181 3313 0 556 262 71 0 chr11 16250715 16250883 -134532670 + MER117 DNA MER1_type 14 193 -4 306 315 91 30 chr11 16252111 16252276 -134531277 + MIR SINE MIR 2 177 -31 210 333 18 45 chr11 16252569 16252680 -134530873 - MIR SINE MIR -68 140 44 561 262 0 20 chr11 16253083 16253232 -134530321 - L2 LINE L2 -1 3312 3167 1298 231 16 80 chr11 16253582 16254020 -134529533 + MLT1C LTR MaLR 1 410 -57 197 229 62 0 chr11 16254035 16254083 -134529470 - L2 LINE L2 -254 3059 3009 450 228 197 21 chr11 16254218 16254411 -134529142 + MIR SINE MIR 35 261 -1 357 263 35 76 chr11 16255089 16255260 -134528293 - L2 LINE L2 0 3313 3150 228 35 0 0 chr11 16256325 16256354 -134527199 + (GA)n Simple_repeat Simple_repeat 1 29 0 296 341 0 0 chr11 16256959 16257041 -134526512 + L3 LINE CR1 1416 1497 -80 220 262 155 12 chr11 16257264 16257348 -134526205 - MIR SINE MIR -77 131 36 624 291 49 45 chr11 16257632 16257763 -134525790 + MIR SINE MIR 18 152 -110 2267 103 3 13 chr11 16257763 16258073 -134525480 + AluSx SINE Alu 1 307 -5 624 291 49 45 chr11 16258073 16258185 -134525368 + MIR SINE MIR 152 262 0 777 290 60 11 chr11 16258339 16258807 -134524746 - LTR33 LTR ERVL -3 518 1 214 261 196 65 chr11 16260238 16260376 -134523177 + MIR SINE MIR 33 188 -74 4843 205 26 83 chr11 16260701 16261021 -134522532 + L1MC4 LINE L1 6750 7086 -956 243 0 0 0 chr11 16261021 16261048 -134522505 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 4843 205 26 83 chr11 16261048 16262094 -134521459 + L1MC4 LINE L1 7086 8039 -3 634 301 40 61 chr11 16262490 16262786 -134520767 - MLT1I LTR MaLR 0 409 120 216 315 7 63 chr11 16264474 16264617 -134518936 + L2 LINE L2 2376 2510 -804 1626 199 0 23 chr11 16264756 16265062 -134518491 - AluJo SINE Alu -13 299 1 413 256 137 48 chr11 16265554 16265805 -134517748 + MLT1G LTR MaLR 19 296 -294 333 140 0 0 chr11 16266957 16267014 -134516539 + (A)n Simple_repeat Simple_repeat 1 57 0 1954 144 44 0 chr11 16267545 16267843 -134515710 - AluJo SINE Alu -1 311 1 349 350 7 21 chr11 16268399 16268539 -134515014 - MIR3 SINE MIR -48 160 23 33 0 0 0 chr11 16269340 16269373 -134514180 + AT_rich Low_complexity Low_complexity 1 33 0 300 343 89 18 chr11 16269390 16269559 -134513994 - L2 LINE L2 0 3313 3133 227 305 86 62 chr11 16269666 16269712 -134513841 + MIR SINE MIR 82 125 -137 2598 170 19 12 chr11 16269712 16270135 -134513418 - MSTB LTR MaLR 0 426 1 227 305 86 62 chr11 16270135 16270216 -134513337 + MIR SINE MIR 125 212 -50 228 67 0 0 chr11 16272316 16272346 -134511207 + (CA)n Simple_repeat Simple_repeat 1 30 0 234 267 0 33 chr11 16273603 16273663 -134509890 + L3 LINE CR1 1519 1576 -1 5845 56 10 0 chr11 16273788 16274470 -134509083 - L1PA7 LINE L1 -11 6143 5455 1599 82 0 0 chr11 16274470 16274689 -134508864 + L1P LINE L1 4999 5217 -929 648 334 54 32 chr11 16275812 16276219 -134507334 - L3 LINE CR1 -482 1095 680 312 317 59 21 chr11 16276800 16276991 -134506562 - MIR SINE MIR -55 153 11 597 220 70 149 chr11 16278543 16278784 -134504769 - MER58A DNA MER1_type 0 224 3 278 281 86 39 chr11 16279161 16279289 -134504264 + MIR SINE MIR 88 221 -41 241 231 19 141 chr11 16279365 16279521 -134504032 + MER102b DNA MER1_type 205 341 0 290 339 79 20 chr11 16279662 16279792 -134503761 + MIR SINE MIR 31 152 -110 1966 183 22 17 chr11 16279792 16280152 -134503401 + MLT1A1 LTR MaLR 4 365 0 290 339 79 20 chr11 16280152 16280178 -134503375 + MIR SINE MIR 152 175 -87 1848 201 28 8 chr11 16280178 16280536 -134503017 - MLT1A1 LTR MaLR 0 365 1 290 339 79 20 chr11 16280536 16280584 -134502969 + MIR SINE MIR 175 251 -11 379 279 108 0 chr11 16281074 16281185 -134502368 - L3 LINE CR1 -64 1513 1391 342 337 26 16 chr11 16281210 16281400 -134502153 - L3 LINE CR1 -802 775 584 236 317 89 0 chr11 16281860 16281954 -134501599 + MIR SINE MIR 48 146 -62 382 335 87 31 chr11 16282640 16283121 -134500432 - L1MC/D LINE L1 -2009 5799 5292 300 292 94 40 chr11 16283293 16283718 -134499835 - L1MC/D LINE L1 -1121 5025 4578 312 229 159 32 chr11 16283894 16284051 -134499502 - L1 LINE L1 -1793 4353 4177 2025 198 50 50 chr11 16284093 16284598 -134498955 - MLT1D LTR MaLR 0 505 1 321 245 123 9 chr11 16284929 16285035 -134498518 + L2 LINE L2 3192 3309 -4 363 312 25 54 chr11 16285238 16285552 -134498001 - HAL1b LINE L1 -547 801 497 275 241 52 60 chr11 16285580 16285696 -134497857 - HAL1b LINE L1 -930 418 304 243 376 0 0 chr11 16287356 16287465 -134496088 + MIR3 SINE MIR 77 185 -23 903 254 87 33 chr11 16288578 16288877 -134494676 - MLT1J2 LTR MaLR -135 315 1 236 283 181 22 chr11 16289933 16290071 -134493482 - MIR SINE MIR -6 256 97 384 248 71 18 chr11 16290515 16290628 -134492925 + MIR SINE MIR 18 136 -72 526 270 68 94 chr11 16291840 16292192 -134491361 + MLT1I LTR MaLR 67 409 0 390 262 238 20 chr11 16292379 16292581 -134490972 - MIR SINE MIR -6 256 11 545 243 45 45 chr11 16293259 16293461 -134490092 + MIR SINE MIR 48 249 -13 272 315 11 0 chr11 16293473 16293565 -134489988 + L2 LINE L2 3221 3313 0 25 31 0 0 chr11 16295813 16295845 -134487708 + AT_rich Low_complexity Low_complexity 1 32 0 287 322 11 0 chr11 16296107 16296194 -134487359 + MIR3 SINE MIR 115 202 -6 387 261 75 37 chr11 16297865 16297999 -134485554 + MIR SINE MIR 116 254 -8 472 258 39 0 chr11 16298754 16298882 -134484671 + MIR SINE MIR 120 252 -10 283 250 15 0 chr11 16298891 16298959 -134484594 + (CAT)n Simple_repeat Simple_repeat 3 71 0 296 345 112 9 chr11 16299922 16300038 -134483515 + MIR3 SINE MIR 3 130 -78 644 229 14 106 chr11 16300045 16300263 -134483290 + MIR SINE MIR 3 200 -62 420 231 0 0 chr11 16300288 16300366 -134483187 + L2 LINE L2 3191 3268 -45 224 321 44 51 chr11 16300638 16300775 -134482778 + MIR3 SINE MIR 43 178 -30 1873 139 66 0 chr11 16301002 16301290 -134482263 - AluJb SINE Alu -5 307 1 815 267 48 0 chr11 16301466 16301653 -134481900 - MER117 DNA MER1_type -1 196 1 259 321 18 4 chr11 16302644 16302740 -134480813 + MIR3 SINE MIR 94 173 -35 1235 295 36 88 chr11 16303442 16303929 -134479624 + MLT1K LTR MaLR 31 483 -105 1274 129 0 25 chr11 16303929 16304130 -134479423 + L1PB1 LINE L1 5956 6151 0 1235 295 36 88 chr11 16304130 16304231 -134479322 + MLT1K LTR MaLR 483 588 0 206 227 0 171 chr11 16304606 16304694 -134478859 + MIR SINE MIR 20 92 -170 201 300 0 0 chr11 16304724 16304774 -134478779 + MIR SINE MIR 91 140 -68 536 325 66 64 chr11 16304781 16305067 -134478486 + L2 LINE L2 2588 2872 -400 862 261 92 4 chr11 16305067 16305305 -134478248 - MIR SINE MIR -2 260 2 536 325 66 64 chr11 16305305 16305347 -134478206 + L2 LINE L2 2872 2912 -360 1985 214 96 17 chr11 16305347 16305815 -134477738 + MLT1D LTR MaLR 1 505 0 536 325 66 64 chr11 16305815 16305981 -134477572 + L2 LINE L2 2912 3076 -196 2121 140 0 3 chr11 16305981 16306295 -134477258 - AluSq SINE Alu 0 313 1 536 325 66 64 chr11 16306295 16306475 -134477078 + L2 LINE L2 3076 3272 0 295 338 54 7 chr11 16307572 16307720 -134475833 + MLT1L LTR MaLR 1 155 -460 306 0 0 0 chr11 16307720 16307754 -134475799 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 1114 287 179 22 chr11 16307763 16308642 -134474911 - L2 LINE L2 -23 3290 2257 420 82 0 0 chr11 16308770 16308831 -134474722 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 480 313 27 16 chr11 16308869 16309048 -134474505 + MIR3 SINE MIR 18 197 -11 326 331 40 0 chr11 16309053 16309177 -134474376 + MIR SINE MIR 19 147 -115 252 86 0 0 chr11 16309303 16309338 -134474215 + (CA)n Simple_repeat Simple_repeat 2 36 0 206 271 71 12 chr11 16309543 16309628 -134473925 + MIR SINE MIR 155 244 -18 241 200 73 0 chr11 16310480 16310535 -134473018 - MLT1I LTR MaLR 0 409 351 236 345 42 49 chr11 16310712 16310854 -134472699 + L2 LINE L2 3128 3268 -4 286 270 110 0 chr11 16311121 16311221 -134472332 - L2 LINE L2 -8 3264 3154 736 260 163 22 chr11 16311262 16311489 -134472064 - MIR SINE MIR 0 262 4 333 47 47 16 chr11 16312067 16312131 -134471422 + (TTTTG)n Simple_repeat Simple_repeat 5 70 0 717 292 97 0 chr11 16312414 16312640 -134470913 - MIR SINE MIR -10 252 5 186 118 0 0 chr11 16312846 16312880 -134470673 + (CAGA)n Simple_repeat Simple_repeat 3 36 0 213 290 11 32 chr11 16313374 16313467 -134470086 + GA-rich Low_complexity Low_complexity 2 92 0 309 247 11 140 chr11 16313707 16313885 -134469668 + L2 LINE L2 3020 3174 -98 552 316 10 10 chr11 16313930 16314123 -134469430 + MIR SINE MIR 40 232 -30 262 211 42 56 chr11 16314158 16314229 -134469324 + L2 LINE L2 3244 3313 0 227 154 0 19 chr11 16315006 16315058 -134468495 + (CA)n Simple_repeat Simple_repeat 1 51 0 204 261 15 46 chr11 16316262 16316327 -134467226 - L2 LINE L2 -1 3312 3250 253 247 67 56 chr11 16317272 16317361 -134466192 + MIR SINE MIR 16 105 -157 188 74 0 0 chr11 16317399 16317426 -134466127 + L2 LINE L2 3275 3301 -12 397 286 79 8 chr11 16317596 16317722 -134465831 - L2 LINE L2 -1 3271 3137 2225 92 0 33 chr11 16317758 16318061 -134465492 + AluSg SINE Alu 1 293 -17 402 330 73 18 chr11 16318177 16318395 -134465158 - MIR SINE MIR -13 249 20 215 250 15 0 chr11 16318539 16318607 -134464946 + (TA)n Simple_repeat Simple_repeat 2 70 0 664 271 63 27 chr11 16318681 16319013 -134464540 - L1ME4a LINE L1 -205 5916 5573 306 318 111 5 chr11 16319200 16319398 -134464155 - L1ME4a LINE L1 -941 5205 4987 322 359 15 0 chr11 16319515 16319646 -134463907 - L1ME4a LINE L1 -1323 4823 4691 506 234 108 13 chr11 16319962 16320120 -134463433 + MIR SINE MIR 77 249 -13 393 294 112 23 chr11 16320566 16320780 -134462773 + MIR SINE MIR 19 251 -11 450 270 96 55 chr11 16320783 16321211 -134462342 - MLT1K LTR MaLR 0 588 165 212 0 0 35 chr11 16321580 16321609 -134461944 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 1733 43 0 0 chr11 16321610 16321819 -134461734 - L1PA4 LINE L1 -3 6152 5944 223 300 0 0 chr11 16321956 16322016 -134461537 + CT-rich Low_complexity Low_complexity 3 62 0 222 345 0 27 chr11 16322625 16322735 -134460818 + CT-rich Low_complexity Low_complexity 1 107 0 274 275 46 55 chr11 16323116 16323225 -134460328 - MIR SINE MIR -70 192 85 210 192 8 77 chr11 16323609 16323616 -134459937 + (TA)n Simple_repeat Simple_repeat 2 8 -114 2069 163 21 0 chr11 16323616 16323953 -134459600 + MER2 DNA MER2_type 1 344 0 210 192 8 77 chr11 16323953 16324075 -134459478 + (TA)n Simple_repeat Simple_repeat 8 122 0 1107 185 0 5 chr11 16324216 16324405 -134459148 - MER5A DNA MER1_type -1 188 1 342 277 180 24 chr11 16324685 16324891 -134458662 - MIR SINE MIR -8 254 17 1189 84 0 11 chr11 16325315 16325365 -134458188 + (GGAA)n Simple_repeat Simple_repeat 1 225 0 1189 84 0 11 chr11 16325365 16325543 -134458010 + (GGAA)n Simple_repeat Simple_repeat 4 179 0 1332 219 93 26 chr11 16326000 16326453 -134457100 + HAL1b LINE L1 232 714 -634 215 30 0 30 chr11 16326606 16326639 -134456914 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 1217 257 87 30 chr11 16326692 16327267 -134456286 + HAL1b LINE L1 737 1344 -4 395 214 8 51 chr11 16327701 16327818 -134455735 - MIR SINE MIR -81 127 16 470 295 24 24 chr11 16328178 16328344 -134455209 + MIR3 SINE MIR 34 199 -9 502 200 90 115 chr11 16329251 16329451 -134454102 - MIR SINE MIR -54 208 14 278 49 0 24 chr11 16331749 16331790 -134451763 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 2124 106 3 7 chr11 16331794 16332263 -134451290 - AluSg SINE Alu 0 468 1 302 254 36 45 chr11 16332297 16332407 -134451146 + L2 LINE L2 2945 3053 -219 218 179 0 0 chr11 16332798 16332837 -134450716 + (TATG)n Simple_repeat Simple_repeat 3 41 0 383 298 130 53 chr11 16333563 16333772 -134449781 - L1ME4a LINE L1 -279 5842 5651 2329 88 10 0 chr11 16333772 16334069 -134449484 + AluSq SINE Alu 1 300 -13 383 298 130 53 chr11 16334069 16334498 -134449055 - L1ME4a LINE L1 -470 5651 5383 776 267 42 33 chr11 16334547 16334787 -134448766 + MLT1E LTR MaLR 1 242 -351 301 294 28 9 chr11 16335074 16335183 -134448370 + L2 LINE L2 3154 3264 -8 259 312 89 25 chr11 16335772 16335929 -134447624 - MIR3 SINE MIR -29 179 13 581 228 32 25 chr11 16336331 16336489 -134447064 - MER91B DNA MER1_type -6 184 26 2315 223 82 31 chr11 16337788 16338386 -134445167 + L1ME3 LINE L1 5405 6044 -118 1212 228 4 12 chr11 16338386 16338627 -134444926 + MER8 DNA MER2_type 1 239 0 2315 223 82 31 chr11 16338627 16338709 -134444844 + L1ME3 LINE L1 6044 6120 -42 811 174 120 0 chr11 16338772 16338939 -134444614 + MER5A DNA MER1_type 3 189 0 270 265 31 20 chr11 16338939 16339037 -134444516 - MIR SINE MIR -91 171 73 1752 125 64 3 chr11 16339044 16339338 -134444215 - LTR62 LTR ERVK -1 718 407 2243 150 28 30 chr11 16339338 16339897 -134443656 - MLT2A2 LTR ERVL 0 554 1 2159 196 31 9 chr11 16339897 16340304 -134443249 - LTR62 LTR ERVK -303 416 1 425 263 38 15 chr11 16340681 16340814 -134442739 + L2 LINE L2 3178 3313 0 279 367 11 21 chr11 16340816 16341004 -134442549 - L2 LINE L2 -575 2739 2554 410 219 154 24 chr11 16341013 16341182 -134442371 + MIR SINE MIR 66 256 -6 2068 132 0 19 chr11 16341335 16341653 -134441900 - AluSx SINE Alu 0 312 1 626 264 84 16 chr11 16343272 16343425 -134440128 - MLT1K LTR MaLR 0 588 410 267 31 0 0 chr11 16343425 16343457 -134440096 + (TC)n Simple_repeat Simple_repeat 2 33 0 626 264 84 16 chr11 16343457 16343553 -134440000 - MLT1K LTR MaLR -178 410 322 207 298 117 80 chr11 16343674 16343882 -134439671 + L3 LINE CR1 1142 1341 -236 1140 225 126 18 chr11 16343882 16344216 -134439337 + MLT1A2 LTR MaLR 4 373 -1 207 298 117 80 chr11 16344216 16344393 -134439160 + L3 LINE CR1 1341 1541 -36 916 270 92 49 chr11 16344762 16345210 -134438343 - MLT1C LTR MaLR 0 467 1 2083 102 0 41 chr11 16346121 16346439 -134437114 - AluSx SINE Alu 0 306 1 237 284 0 0 chr11 16346440 16346507 -134437046 - MIR SINE MIR -112 150 84 1577 185 127 28 chr11 16348715 16349109 -134434444 - LTR40b LTR ERVL -27 435 3 206 286 18 0 chr11 16349399 16349455 -134434098 - L2 LINE L2 -2 3311 3255 1160 254 106 18 chr11 16349529 16349978 -134433575 - L2 LINE L2 -42 3271 2781 260 306 41 25 chr11 16350200 16350321 -134433232 - MIR3 SINE MIR -80 128 6 233 274 59 29 chr11 16352268 16352370 -134431183 + MLT1I LTR MaLR 39 143 -266 381 180 0 120 chr11 16352498 16352598 -134430955 + MLT1H LTR MaLR 431 518 -31 212 251 6 132 chr11 16353251 16353418 -134430135 + MIR SINE MIR 86 231 -31 549 295 24 6 chr11 16353582 16353748 -134429805 + MIR SINE MIR 20 188 -74 805 223 149 0 chr11 16356277 16356492 -134427061 - MIR SINE MIR 0 262 16 287 273 0 0 chr11 16356524 16356590 -134426963 - L2 LINE L2 -216 3056 2991 622 223 153 0 chr11 16356816 16356973 -134426580 + MER5A DNA MER1_type 9 189 0 193 236 82 73 chr11 16356996 16357106 -134426447 - MIR3 SINE MIR -89 119 9 427 287 37 7 chr11 16357452 16357588 -134425965 + MIR SINE MIR 29 168 -94 572 279 69 26 chr11 16358575 16358808 -134424745 - MIR SINE MIR -13 249 7 204 309 48 24 chr11 16358994 16359078 -134424475 - L3 LINE CR1 -520 1057 972 24 0 0 0 chr11 16359407 16359431 -134424122 + AT_rich Low_complexity Low_complexity 1 24 0 251 299 13 0 chr11 16359962 16360039 -134423514 - MIR SINE MIR -86 122 45 730 284 111 19 chr11 16360176 16360736 -134422817 - L2 LINE L2 -78 3235 2625 336 243 158 7 chr11 16360739 16360891 -134422662 - MIR SINE MIR -65 197 23 344 233 47 23 chr11 16361022 16361151 -134422402 - MIR SINE MIR -6 256 125 188 250 0 21 chr11 16361941 16361989 -134421564 - MIR SINE MIR -14 248 202 469 224 32 24 chr11 16362892 16363017 -134420536 - MER5B DNA MER1_type -51 127 2 294 366 49 0 chr11 16363037 16363220 -134420333 + MIR SINE MIR 50 241 -21 328 276 0 0 chr11 16364237 16364313 -134419240 + MER5C DNA MER1_type 1 76 -248 199 206 178 14 chr11 16365181 16365254 -134418299 + MIR SINE MIR 71 155 -107 1326 205 111 52 chr11 16365859 16366283 -134417270 - MLT1C LTR MaLR -8 459 11 1558 186 38 51 chr11 16366309 16366679 -134416874 + MLT1A1 LTR MaLR 1 365 0 197 260 20 0 chr11 16366686 16366736 -134416817 + L2 LINE L2 3258 3308 -5 237 298 114 0 chr11 16366757 16366871 -134416682 - L2 LINE L2 -8 3264 3138 838 232 55 25 chr11 16367795 16367950 -134415603 + MIR SINE MIR 1 167 -95 2238 125 27 6 chr11 16367950 16368287 -134415266 - MER2 DNA MER2_type 0 344 1 838 232 55 25 chr11 16368287 16368368 -134415185 + MIR SINE MIR 167 244 -18 252 295 67 19 chr11 16368461 16368566 -134414987 + L2 LINE L2 3162 3271 -1 1571 214 147 24 chr11 16368685 16369174 -134414379 + MLT1F1 LTR MaLR 20 567 0 494 281 78 6 chr11 16369324 16369491 -134414062 + MIR SINE MIR 46 224 -38 649 311 82 20 chr11 16369570 16369924 -134413629 - L2 LINE L2 -1 3312 2937 662 208 16 0 chr11 16369925 16370050 -134413503 - L2 LINE L2 -3 3310 3184 644 303 96 13 chr11 16370075 16370532 -134413021 - L2 LINE L2 -252 3061 2553 778 234 42 33 chr11 16370629 16370843 -134412710 + MIR SINE MIR 10 225 -37 188 244 0 0 chr11 16370809 16370850 -134412703 - L2 LINE L2 -368 2946 2906 * 2114 150 18 3 chr11 16371277 16371617 -134411936 + MER7A DNA MER2_type 4 346 0 227 274 137 10 chr11 16371717 16371819 -134411734 + LTR33 LTR ERVL 6 120 -401 277 214 22 45 chr11 16371907 16371996 -134411557 + LTR33 LTR ERVL 358 444 -77 187 324 88 29 chr11 16372735 16372837 -134410716 - L3 LINE CR1 -114 1463 1356 200 239 70 28 chr11 16373067 16373138 -134410415 - L2 LINE L2 -3 3310 3237 2222 160 22 3 chr11 16373335 16373692 -134409861 - THE1B LTR MaLR 0 364 1 320 252 72 27 chr11 16373875 16373986 -134409567 - L3 LINE CR1 -108 1469 1354 393 39 0 0 chr11 16374082 16374133 -134409420 + (TG)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr11 16374818 16374839 -134408714 + AT_rich Low_complexity Low_complexity 1 21 0 759 287 39 88 chr11 16375079 16375615 -134407938 + LTR67 LTR ERVL 23 532 -25 395 320 53 7 chr11 16377391 16377541 -134406012 - MIR SINE MIR -83 179 23 248 133 17 0 chr11 16377859 16377919 -134405634 + (CA)n Simple_repeat Simple_repeat 1 61 0 426 144 11 64 chr11 16377947 16378135 -134405418 + (CA)n Simple_repeat Simple_repeat 2 179 0 250 273 16 16 chr11 16378165 16378286 -134405267 + (CA)n Simple_repeat Simple_repeat 1 121 0 188 67 33 0 chr11 16378297 16378327 -134405226 + (CA)n Simple_repeat Simple_repeat 1 31 0 216 192 35 29 chr11 16378353 16378525 -134405028 + (CA)n Simple_repeat Simple_repeat 1 173 0 494 161 22 7 chr11 16378586 16378723 -134404830 + (CA)n Simple_repeat Simple_repeat 2 140 0 349 93 21 98 chr11 16378744 16378937 -134404616 + (CA)n Simple_repeat Simple_repeat 2 179 0 350 242 92 121 chr11 16379230 16379503 -134404050 - L1ME4a LINE L1 -2 6119 5855 637 290 190 42 chr11 16379507 16380091 -134403462 - L2 LINE L2 0 3313 2628 1819 202 29 69 chr11 16380101 16380620 -134402933 + MLT1D LTR MaLR 8 505 0 181 257 80 107 chr11 16380620 16380807 -134402746 - L2 LINE L2 -686 2628 2447 487 239 43 17 chr11 16380834 16380951 -134402602 + L2 LINE L2 3149 3268 -4 1649 199 100 51 chr11 16382594 16383137 -134400416 + MLT1F1 LTR MaLR 1 567 0 428 300 23 15 chr11 16383209 16383339 -134400214 + MIR3 SINE MIR 39 169 -39 186 297 27 14 chr11 16383314 16383388 -134400165 - L2 LINE L2 -838 2476 2402 * 957 183 99 15 chr11 16384395 16384597 -134398956 - MER20 DNA MER1_type 0 219 1 231 125 0 0 chr11 16384718 16384758 -134398795 + (TC)n Simple_repeat Simple_repeat 2 41 0 267 31 0 0 chr11 16384758 16384790 -134398763 + (CA)n Simple_repeat Simple_repeat 1 32 0 319 246 45 63 chr11 16384813 16384956 -134398597 - MIR3 SINE MIR -85 123 2 1079 167 63 13 chr11 16385531 16385770 -134397783 + MER44D DNA MER2_type 1 521 -88 458 207 0 0 chr11 16385800 16385887 -134397666 - Tigger5 DNA MER2_type -2235 88 2 429 198 12 0 chr11 16385892 16385978 -134397575 + MER44D DNA MER2_type 619 705 0 704 218 153 72 chr11 16386039 16386439 -134397114 - MLT1H LTR MaLR -5 544 113 2361 237 43 34 chr11 16387120 16387566 -134395987 - L1ME1 LINE L1 -5 6161 5704 1831 186 64 3 chr11 16387566 16387910 -134395643 + MLT1A1 LTR MaLR 1 365 0 2361 237 43 34 chr11 16387910 16388202 -134395351 - L1ME1 LINE L1 -462 5704 5416 287 263 25 12 chr11 16388232 16388312 -134395241 + MLT1J LTR MaLR 70 150 -361 530 303 78 76 chr11 16389778 16390213 -134393340 + L2 LINE L2 2836 3271 -1 202 229 42 0 chr11 16390219 16390267 -134393286 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 452 298 58 26 chr11 16390284 16390475 -134393078 + L2 LINE L2 3117 3313 0 444 19 0 0 chr11 16390749 16390802 -134392751 + (TATG)n Simple_repeat Simple_repeat 2 54 0 2173 119 0 0 chr11 16390802 16391088 -134392465 - AluSq SINE Alu -27 286 1 26 0 0 0 chr11 16391088 16391114 -134392439 + AT_rich Low_complexity Low_complexity 1 26 0 209 205 0 0 chr11 16391711 16391750 -134391803 + GA-rich Low_complexity Low_complexity 2 40 0 510 163 0 0 chr11 16391755 16391853 -134391700 + (TGGA)n Simple_repeat Simple_repeat 4 101 0 331 261 80 51 chr11 16392361 16392499 -134391054 - MIR SINE MIR -46 216 75 2463 64 0 3 chr11 16393166 16393462 -134390091 + AluY SINE Alu 1 295 -16 2124 134 3 10 chr11 16393970 16394268 -134389285 + AluSx SINE Alu 1 296 -16 233 293 23 58 chr11 16395000 16395174 -134388379 + L1ME4a LINE L1 5618 5785 -336 559 16 0 0 chr11 16395284 16395348 -134388205 + L1PA5 LINE L1 6078 6141 -13 21 0 0 0 chr11 16395348 16395369 -134388184 + AT_rich Low_complexity Low_complexity 1 21 0 676 286 112 40 chr11 16396183 16396532 -134387021 + MLT1J LTR MaLR 35 408 -103 333 238 168 0 chr11 16397006 16397107 -134386446 + L1ME4a LINE L1 6003 6120 -1 2339 208 35 65 chr11 16397167 16397738 -134385815 + MLT2B3 LTR ERVL 1 554 0 474 317 110 6 chr11 16397838 16398002 -134385551 - MIR SINE MIR -35 227 47 360 225 78 110 chr11 16398099 16398290 -134385263 - MLT1K LTR MaLR -6 582 398 404 296 138 28 chr11 16398337 16398584 -134384969 - MLT1K LTR MaLR -271 317 44 216 266 51 13 chr11 16399009 16399088 -134384465 - L2 LINE L2 -4 3309 3228 1370 204 77 79 chr11 16399145 16399611 -134383942 - MLT1C LTR MaLR -2 465 1 194 333 86 51 chr11 16400048 16400165 -134383388 + L2 LINE L2 3151 3271 -1 252 292 40 75 chr11 16400223 16400379 -134383174 + MIR SINE MIR 18 168 -61 410 348 34 20 chr11 16401302 16401506 -134382047 - L2 LINE L2 -160 3112 2906 302 237 126 22 chr11 16402018 16402153 -134381400 + L1MEd LINE L1 4 152 -5967 517 245 157 67 chr11 16402402 16402936 -134380617 + L1MEd LINE L1 650 1231 -4888 873 286 77 109 chr11 16402939 16403464 -134380089 + L1MEd LINE L1 1293 1777 -4533 2099 160 30 0 chr11 16403464 16403801 -134379752 + MER7A DNA MER2_type 2 346 0 873 286 77 109 chr11 16403801 16404200 -134379353 + L1MEd LINE L1 1777 2187 -4123 513 276 140 17 chr11 16404205 16404734 -134378819 + L1MEd LINE L1 2153 2746 -3383 218 116 23 0 chr11 16404795 16404838 -134378715 + (CCA)n Simple_repeat Simple_repeat 1 44 0 313 254 75 11 chr11 16405153 16405315 -134378238 + L1MEd LINE L1 3602 3767 -2362 210 333 71 30 chr11 16405344 16405443 -134378110 - MIR3 SINE MIR -36 172 70 312 250 53 0 chr11 16405636 16405712 -134377841 - MIR SINE MIR -59 203 124 315 0 0 0 chr11 16406040 16406075 -134377478 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 283 38 0 chr11 16406118 16406171 -134377382 + MIR SINE MIR 21 75 -133 890 259 126 40 chr11 16406419 16406847 -134376706 - MLT1J LTR MaLR -46 465 1 400 263 151 78 chr11 16407585 16407790 -134375763 - MIR SINE MIR -12 250 31 233 286 12 24 chr11 16408057 16408141 -134375412 + L2 LINE L2 3175 3257 -56 536 261 59 50 chr11 16408159 16408381 -134375172 + L2 LINE L2 3090 3313 0 588 345 25 13 chr11 16409992 16410230 -134373323 - MIR SINE MIR -20 242 2 206 344 21 21 chr11 16410266 16410362 -134373191 + MIR3 SINE MIR 81 176 -32 274 256 37 0 chr11 16412826 16412908 -134370645 - MIR SINE MIR -4 258 174 182 239 22 22 chr11 16413305 16413351 -134370202 - MIR SINE MIR -106 156 111 245 311 215 0 chr11 16414809 16414944 -134368609 + L2 LINE L2 2943 3106 -166 576 192 42 0 chr11 16415060 16415180 -134368373 - MER96B DNA MER1_type? -1 416 292 387 194 0 0 chr11 16415202 16415295 -134368258 + (CA)n Simple_repeat Simple_repeat 2 94 0 240 258 204 30 chr11 16415464 16415596 -134367957 - MER5B DNA MER1_type -23 155 1 301 317 217 37 chr11 16415885 16416349 -134367204 - L2 LINE L2 -49 3264 2734 215 173 19 58 chr11 16416882 16416934 -134366619 - L2 LINE L2 -26 3287 3238 183 233 192 27 chr11 16417115 16417188 -134366365 - MIR SINE MIR -111 151 67 302 244 80 159 chr11 16417368 16417569 -134365984 + MIR SINE MIR 19 203 -5 240 357 0 0 chr11 16417740 16417838 -134365715 + L2 LINE L2 2968 3065 -248 1977 252 127 4 chr11 16417851 16418677 -134364876 - L1M4 LINE L1 -2118 4028 3101 330 261 103 24 chr11 16418882 16419047 -134364506 - MER117 DNA MER1_type -4 193 16 1032 166 118 0 chr11 16420166 16420353 -134363200 - MER3 DNA MER1_type 0 209 1 212 334 33 92 chr11 16420604 16420909 -134362644 - L2 LINE L2 -100 3172 2886 200 274 65 0 chr11 16420947 16421009 -134362544 + L2 LINE L2 3248 3313 0 726 204 96 0 chr11 16421296 16421453 -134362100 - MER5A DNA MER1_type -1 188 17 265 306 20 20 chr11 16421457 16421555 -134361998 - MIR SINE MIR -153 109 12 185 300 14 43 chr11 16422449 16422519 -134361034 - L2 LINE L2 0 3272 3205 180 324 0 28 chr11 16423027 16423098 -134360455 + MIR SINE MIR 172 240 -22 2845 244 90 105 chr11 16423152 16424063 -134359490 + HAL1 LINE L1 7 930 -1577 233 56 0 28 chr11 16424063 16424099 -134359454 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 2845 244 90 105 chr11 16424099 16424821 -134358732 + HAL1 LINE L1 930 1661 -846 2798 153 7 16 chr11 16424821 16425251 -134358302 - MSTB LTR MaLR 0 426 1 2845 244 90 105 chr11 16425251 16425744 -134357809 + HAL1 LINE L1 1661 2104 -403 2538 123 25 6 chr11 16425744 16426101 -134357452 + THE1B LTR MaLR 1 364 0 2845 244 90 105 chr11 16426101 16426132 -134357421 + HAL1 LINE L1 2104 2134 -373 404 256 22 122 chr11 16426153 16426423 -134357130 + HAL1 LINE L1 2265 2507 0 865 289 121 53 chr11 16426568 16427168 -134356385 + L2 LINE L2 2665 3313 0 459 219 126 33 chr11 16427180 16427331 -134356222 - MIR SINE MIR -71 191 27 644 201 26 124 chr11 16427416 16427610 -134355943 + MER5B DNA MER1_type 4 178 0 21 57 0 0 chr11 16427929 16427964 -134355589 + AT_rich Low_complexity Low_complexity 1 35 0 875 232 53 29 chr11 16427971 16428019 -134355534 - MER58A DNA MER1_type -2208 212 167 2420 119 121 16 chr11 16428019 16428406 -134355147 - MSTA LTR MaLR 0 428 1 875 232 53 29 chr11 16428406 16428564 -134354989 - MER58A DNA MER1_type -2253 167 1 234 288 144 24 chr11 16428841 16428966 -134354587 - L2 LINE L2 0 3272 3133 968 253 131 17 chr11 16429192 16429654 -134353899 + MLT1K LTR MaLR 23 575 -13 28 79 0 0 chr11 16430819 16430882 -134352671 + AT_rich Low_complexity Low_complexity 1 63 0 1484 102 9 14 chr11 16431276 16431492 -134352061 + AluSg/x SINE Alu 96 310 -2 1390 274 85 39 chr11 16431937 16432502 -134351051 + MLT1G1 LTR MaLR 5 595 0 2080 101 47 7 chr11 16432586 16432882 -134350671 - AluSp SINE Alu -5 308 1 485 185 44 109 chr11 16432893 16433130 -134350423 + MER106B DNA MER1_type 6 1055 -4 322 326 47 8 chr11 16433208 16433337 -134350216 + MIR SINE MIR 73 206 -56 232 111 28 0 chr11 16433685 16433721 -134349832 - MIR SINE MIR -11 251 215 236 343 39 0 chr11 16433822 16433924 -134349629 - L2 LINE L2 -221 3051 2946 228 376 0 0 chr11 16434758 16434843 -134348710 + MIR SINE MIR 37 121 -87 229 250 0 0 chr11 16434987 16435031 -134348522 - MER5A DNA MER1_type -137 52 9 1579 177 14 14 chr11 16435890 16436184 -134347369 - AluSx SINE Alu -18 294 1 277 305 141 0 chr11 16436417 16436545 -134347008 - L2 LINE L2 -6 3307 3162 454 291 138 0 chr11 16437134 16437337 -134346216 - MIR SINE MIR -29 233 3 255 254 17 0 chr11 16440832 16440891 -134342662 + CT-rich Low_complexity Low_complexity 1 60 0 189 0 0 0 chr11 16440906 16440927 -134342626 + (T)n Simple_repeat Simple_repeat 1 21 0 206 286 0 14 chr11 16442265 16442335 -134341218 + GA-rich Low_complexity Low_complexity 3 71 0 246 62 0 0 chr11 16444431 16444463 -134339090 + (CAA)n Simple_repeat Simple_repeat 2 33 0 540 283 70 27 chr11 16446503 16446690 -134336863 - MIR SINE MIR -17 245 51 556 272 83 28 chr11 16447182 16447362 -134336191 + MIR SINE MIR 22 211 -51 6564 249 67 99 chr11 16447686 16450891 -134332662 + L2 LINE L2 194 3313 0 501 293 135 72 chr11 16450937 16451271 -134332282 + L3 LINE CR1 1215 1569 -8 579 223 16 171 chr11 16452683 16452988 -134330565 - MIR SINE MIR -3 259 2 560 293 68 11 chr11 16453061 16453252 -134330301 + MIR SINE MIR 46 247 -15 1487 141 24 8 chr11 16453312 16453561 -134329992 + MER2 DNA MER2_type 11 263 -82 290 151 245 0 chr11 16453625 16453678 -134329875 + MER2 DNA MER2_type 280 345 0 2886 261 111 51 chr11 16503952 16505451 -134278102 - HAL1 LINE L1 -918 1589 1 209 33 33 0 chr11 16505949 16505979 -134277574 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2166 100 0 17 chr11 16505982 16506282 -134277271 - AluSc SINE Alu -14 295 1 2138 148 9 15 chr11 16506326 16506665 -134276888 - MER1B DNA MER1_type 0 337 1 911 194 0 0 chr11 16506666 16506831 -134276722 + L1MD2 LINE L1 6166 6330 -29 558 309 99 9 chr11 16506896 16507129 -134276424 + MIR SINE MIR 3 256 -6 204 40 0 0 chr11 16507136 16507161 -134276392 + (CAT)n Simple_repeat Simple_repeat 3 27 0 301 286 43 36 chr11 16507627 16507767 -134275786 + MIR3 SINE MIR 20 160 -48 842 179 5 70 chr11 16507768 16507969 -134275584 + MER5A DNA MER1_type 2 189 0 668 217 14 7 chr11 16507989 16508127 -134275426 - MER5A DNA MER1_type -49 140 2 182 305 0 34 chr11 16508127 16508175 -134275378 + L3 LINE CR1 1527 1572 -5 207 253 0 51 chr11 16509598 16509677 -134273876 + GA-rich Low_complexity Low_complexity 1 75 0 182 37 37 0 chr11 16510709 16510736 -134272817 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 643 158 30 0 chr11 16510749 16510914 -134272639 + CT-rich Low_complexity Low_complexity 1 170 0 244 354 9 44 chr11 16512046 16512159 -134271394 - L2 LINE L2 0 3272 3164 275 281 191 0 chr11 16512954 16513043 -134270510 + L2 LINE L2 3208 3313 0 272 225 214 11 chr11 16514429 16514518 -134269035 - L2 LINE L2 0 3313 3207 261 224 0 40 chr11 16514528 16514604 -134268949 + L1MC4 LINE L1 6630 6702 -1340 858 302 27 59 chr11 16514604 16515150 -134268403 - L2 LINE L2 -139 3174 2593 765 0 0 0 chr11 16516059 16516144 -134267409 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 275 173 50 173 chr11 16518486 16518625 -134264928 - MIR3 SINE MIR -6 202 81 238 340 3 3 chr11 16518814 16518922 -134264631 - MIR3 SINE MIR -53 155 47 2118 117 0 22 chr11 16518949 16519265 -134264288 - AluSp SINE Alu -1 312 4 2199 232 44 25 chr11 16519653 16520363 -134263190 + L1ME1 LINE L1 3750 4472 -1674 1062 171 34 0 chr11 16520370 16520575 -134262978 + L1MA9 LINE L1 6067 6278 -34 * 2559 243 79 14 chr11 16520558 16522053 -134261500 + L1ME1 LINE L1 4432 6035 -131 447 290 16 32 chr11 16522161 16522285 -134261268 - MIR SINE MIR -92 170 49 356 138 15 0 chr11 16522328 16522393 -134261160 + GA-rich Low_complexity Low_complexity 2 67 0 484 313 38 33 chr11 16522496 16522707 -134260846 - MIR SINE MIR -5 257 46 682 327 103 27 chr11 16522822 16523189 -134260364 - L3 LINE CR1 -5 1572 1178 22 0 0 0 chr11 16523225 16523247 -134260306 + AT_rich Low_complexity Low_complexity 1 22 0 1758 169 3 7 chr11 16527487 16527816 -134255737 + AluJb SINE Alu 1 312 0 257 313 36 0 chr11 16528782 16528865 -134254688 - MIR SINE MIR 0 262 177 185 296 0 19 chr11 16528864 16528918 -134254635 + MIR SINE MIR 90 142 -120 * 185 339 0 0 chr11 16529988 16530044 -134253509 - L2 LINE L2 -12 3260 3205 217 393 87 0 chr11 16530105 16530278 -134253275 + L2 LINE L2 3116 3303 -10 4471 183 9 2 chr11 16530533 16531439 -134252114 + L1 LINE L1 4323 5234 -912 28 48 0 0 chr11 16531996 16532038 -134251515 + AT_rich Low_complexity Low_complexity 1 42 0 304 302 119 48 chr11 16532158 16532284 -134251269 - MIR3 SINE MIR -23 185 51 414 0 0 0 chr11 16532801 16532847 -134250706 + (TA)n Simple_repeat Simple_repeat 1 46 0 353 270 61 9 chr11 16533007 16533122 -134250431 - MIR SINE MIR -6 256 136 26 0 0 0 chr11 16533156 16533182 -134250371 + AT_rich Low_complexity Low_complexity 1 26 0 5498 171 34 13 chr11 16533746 16535856 -134247697 + L1M1 LINE L1 3617 5807 -497 2726 108 3 5 chr11 16535956 16536344 -134247209 + THE1B-int LTR MaLR 1194 1580 0 2599 101 3 6 chr11 16536344 16536709 -134246844 + THE1B LTR MaLR 1 364 0 1233 101 0 39 chr11 16536709 16536916 -134246637 + L1MA2 LINE L1 6106 6304 0 201 39 0 0 chr11 16537181 16537207 -134246346 + (TAGGG)n Simple_repeat Simple_repeat 5 30 0 382 373 52 12 chr11 16537819 16538071 -134245482 + L2 LINE L2 2995 3256 -16 1186 31 13 0 chr11 16538516 16538675 -134244878 + (GAAA)n Simple_repeat Simple_repeat 1 161 0 2093 101 7 0 chr11 16539829 16540151 -134243402 - AluSg SINE Alu 0 324 1 1172 216 39 12 chr11 16540207 16540461 -134243092 - MIR SINE MIR 0 262 2 2853 138 40 0 chr11 16540605 16541053 -134242500 + Tigger1 DNA MER2_type 1 466 -1952 * 8613 116 37 30 chr11 16541048 16542195 -134241358 + Tigger1 DNA MER2_type 1014 2151 -267 1789 112 0 4 chr11 16542195 16542446 -134241107 - AluSc SINE Alu -21 288 39 8613 116 37 30 chr11 16542446 16542575 -134240978 + Tigger1 DNA MER2_type 2151 2278 -140 1400 177 0 113 chr11 16542575 16542902 -134240651 - AluJo SINE Alu -12 290 1 8613 116 37 30 chr11 16542902 16543018 -134240535 + Tigger1 DNA MER2_type 2278 2417 -1 1716 143 40 4 chr11 16543320 16543627 -134239926 + AluSx SINE Alu 1 317 0 2323 99 47 11 chr11 16543850 16544212 -134239341 + THE1C LTR MaLR 1 375 0 216 293 154 8 chr11 16544402 16544525 -134239028 - MIR SINE MIR -69 193 53 3618 220 114 38 chr11 16544560 16544719 -134238834 - L1MC4 LINE L1 -327 7715 7569 3507 31 0 0 chr11 16544719 16545138 -134238415 - L1PA4 LINE L1 -3 6152 5734 3618 220 114 38 chr11 16545138 16546112 -134237441 - L1MC4 LINE L1 -473 7569 6496 245 29 29 0 chr11 16546112 16546146 -134237407 + (TA)n Simple_repeat Simple_repeat 2 36 0 231 215 101 25 chr11 16546196 16546275 -134237278 - L1MC4 LINE L1 -1340 6702 6618 2288 64 4 0 chr11 16546750 16547063 -134236490 + AluY SINE Alu 1 314 0 471 339 32 29 chr11 16547412 16547760 -134235793 + L1PA15 LINE L1 2 350 -7231 8252 226 18 25 chr11 16548715 16551431 -134232122 + L1PA15 LINE L1 2319 5036 -2548 2756 192 3 37 chr11 16551426 16552051 -134231502 + L1PA15 LINE L1 5767 6370 -1214 * 1398 164 50 47 chr11 16552053 16552227 -134231326 - THE1B LTR MaLR 0 364 192 3306 91 4 0 chr11 16552227 16552679 -134230874 + L1PA6 LINE L1 5686 6139 -15 1398 164 50 47 chr11 16552679 16552926 -134230627 - THE1B LTR MaLR -172 192 1 5220 149 24 12 chr11 16552926 16553393 -134230160 + L1PA15 LINE L1 6368 6828 -775 2265 108 118 40 chr11 16553393 16553613 -134229940 - MSTA LTR MaLR 0 428 227 2878 9 0 0 chr11 16553613 16553931 -134229622 - AluYb8 SINE Alu 0 318 1 2265 108 118 40 chr11 16553931 16554107 -134229446 - MSTA LTR MaLR -201 227 1 5220 149 24 12 chr11 16554107 16554815 -134228738 + L1PA15 LINE L1 6828 7560 -43 906 271 114 36 chr11 16555405 16555907 -134227646 - L2 LINE L2 0 3313 2762 23 54 0 0 chr11 16556401 16556438 -134227115 + AT_rich Low_complexity Low_complexity 1 37 0 6305 208 23 75 chr11 16556626 16557011 -134226542 - L1MB4 LINE L1 0 6180 5776 399 89 0 0 chr11 16557011 16557067 -134226486 + (TA)n Simple_repeat Simple_repeat 1 56 0 6305 208 23 75 chr11 16557067 16558880 -134224673 - L1MB4 LINE L1 -404 5776 4047 896 200 0 0 chr11 16558880 16559025 -134224528 - FRAM SINE Alu -31 145 1 6305 208 23 75 chr11 16559025 16559683 -134223870 - L1MB4 LINE L1 -2133 4047 3356 219 69 0 0 chr11 16559776 16559805 -134223748 + (TG)n Simple_repeat Simple_repeat 2 30 0 219 69 0 0 chr11 16559829 16559858 -134223695 + (TG)n Simple_repeat Simple_repeat 2 30 0 363 297 33 82 chr11 16559861 16560043 -134223510 - MIR SINE MIR -70 192 20 33 25 0 0 chr11 16560428 16560468 -134223085 + AT_rich Low_complexity Low_complexity 1 40 0 7173 162 12 6 chr11 16560477 16562753 -134220800 - L1PB1 LINE L1 -61 6090 3805 250 235 10 51 chr11 16564363 16564461 -134219092 + CT-rich Low_complexity Low_complexity 3 96 0 183 358 28 64 chr11 16566091 16566200 -134217353 - L2 LINE L2 -6 3266 3162 21 57 0 0 chr11 16566273 16566308 -134217245 + AT_rich Low_complexity Low_complexity 1 35 0 293 379 75 0 chr11 16568799 16568960 -134214593 - MIR SINE MIR -68 194 22 216 0 0 0 chr11 16571548 16571572 -134211981 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 257 265 99 43 chr11 16573268 16573430 -134210123 + MIR SINE MIR 34 204 -58 338 245 10 61 chr11 16573547 16573645 -134209908 + L2 LINE L2 3181 3273 -40 2691 126 11 26 chr11 16575779 16576232 -134207321 + L1MC1 LINE L1 5888 6333 0 228 229 16 33 chr11 16576263 16576324 -134207229 - L2 LINE L2 0 3313 3254 541 208 0 0 chr11 16576394 16576500 -134207053 + MER20 DNA MER1_type 113 218 -1 296 245 51 20 chr11 16576511 16576609 -134206944 - L2 LINE L2 -62 3251 3151 207 204 0 0 chr11 16577089 16577133 -134206420 + (TA)n Simple_repeat Simple_repeat 1 44 0 276 306 0 0 chr11 16577198 16577283 -134206270 - MIR SINE MIR -104 158 74 651 232 74 36 chr11 16579482 16579707 -134203846 + MIR SINE MIR 28 251 -11 284 264 0 28 chr11 16579744 16579816 -134203737 - L2 LINE L2 0 3313 3244 208 175 0 25 chr11 16579920 16579960 -134203593 + (TATG)n Simple_repeat Simple_repeat 2 40 0 181 222 0 44 chr11 16580194 16580239 -134203314 - MIR3 SINE MIR -2 206 164 * 197 200 0 0 chr11 16580205 16580240 -134203313 - L3b LINE CR1 -7 1576 1542 * 412 263 165 17 chr11 16580233 16580422 -134203131 + MIR SINE MIR 40 252 -10 * 421 284 24 47 chr11 16580371 16580498 -134203055 - MIR3 SINE MIR -15 193 70 535 340 82 58 chr11 16580840 16581336 -134202217 - L2 LINE L2 -4 3268 2776 21 0 0 0 chr11 16583041 16583062 -134200491 + AT_rich Low_complexity Low_complexity 1 21 0 1060 184 20 30 chr11 16583062 16583263 -134200290 - AluJo SINE Alu -20 292 94 732 192 29 24 chr11 16583638 16583815 -134199738 - MIR SINE MIR -16 246 68 213 231 0 0 chr11 16583859 16583911 -134199642 + T-rich Low_complexity Low_complexity 1 52 0 700 130 55 20 chr11 16583916 16584062 -134199491 - L1MA7 LINE L1 -1 6290 6140 287 25 0 0 chr11 16584062 16584102 -134199451 - L1PA2 LINE L1 -4 6151 6112 998 184 18 0 chr11 16584595 16584763 -134198790 + AluSq SINE Alu 128 298 -15 41831 57 4 0 chr11 16585025 16591147 -134192406 + L1PA5 LINE L1 11 6153 -1 287 53 0 0 chr11 16596496 16596534 -134187019 - AluSx SINE Alu -6 296 259 1308 104 19 66 chr11 16596534 16596600 -134186953 - AluSx SINE Alu -110 202 134 2115 132 0 0 chr11 16596600 16596895 -134186658 - AluSc SINE Alu -12 297 3 1308 104 19 66 chr11 16596895 16597040 -134186513 - AluSx SINE Alu -178 134 1 1127 244 37 0 chr11 16598962 16599204 -134184349 + MIR SINE MIR 2 252 -10 375 269 211 6 chr11 16599214 16599370 -134184183 + MIR SINE MIR 49 236 -26 464 297 21 0 chr11 16599769 16599914 -134183639 + MIR3 SINE MIR 46 193 -15 387 328 162 35 chr11 16600034 16600324 -134183229 + L2 LINE L2 2062 2388 -926 796 251 176 23 chr11 16600334 16600725 -134182828 + L2 LINE L2 2805 3255 -58 240 362 23 23 chr11 16600856 16601030 -134182523 + L2 LINE L2 2489 2662 -652 189 329 131 44 chr11 16601074 16601211 -134182342 + L2 LINE L2 2234 2382 -932 533 340 105 40 chr11 16601299 16601844 -134181709 + L2 LINE L2 2669 3251 -21 308 333 99 0 chr11 16602542 16602598 -134180955 - MIR SINE MIR -55 207 158 327 65 0 0 chr11 16602598 16602644 -134180909 + (TG)n Simple_repeat Simple_repeat 2 47 0 308 333 99 0 chr11 16602644 16602728 -134180825 - MIR SINE MIR -104 158 53 598 338 130 25 chr11 16603810 16604210 -134179343 - LTR16A LTR ERVL 0 450 9 807 188 82 77 chr11 16604761 16604969 -134178584 + MER63A DNA MER1_type 1 209 -1 310 214 11 11 chr11 16605048 16605137 -134178416 + (TA)n Simple_repeat Simple_repeat 1 89 0 2237 142 89 2 chr11 16606092 16606486 -134177067 + MSTA LTR MaLR 1 428 0 205 333 0 29 chr11 16606488 16606557 -134176996 + MIR3 SINE MIR 90 156 -52 278 273 23 40 chr11 16606644 16606820 -134176733 + GA-rich Low_complexity Low_complexity 2 174 0 432 176 42 129 chr11 16606854 16607047 -134176506 - MER112 DNA MER1_type -84 176 1 1373 185 75 8 chr11 16607715 16608001 -134175552 - AluJo SINE Alu 0 304 1 2165 97 13 10 chr11 16608274 16608583 -134174970 + AluSg SINE Alu 1 310 0 260 314 57 0 chr11 16609029 16609099 -134174454 + L2 LINE L2 3139 3212 -60 2396 91 0 0 chr11 16609348 16609645 -134173908 + AluSx SINE Alu 1 297 -15 275 238 50 12 chr11 16609665 16609745 -134173808 + MIR SINE MIR 180 262 0 244 363 116 14 chr11 16610227 16610373 -134173180 - L2 LINE L2 -27 3286 3126 1562 273 114 60 chr11 16610711 16611746 -134171807 + L2 LINE L2 2204 3308 -5 26 30 0 0 chr11 16615259 16615292 -134168261 + AT_rich Low_complexity Low_complexity 1 33 0 373 312 74 32 chr11 16616415 16616604 -134166949 - MIR3 SINE MIR -6 202 6 32 43 0 0 chr11 16617542 16617588 -134165965 + AT_rich Low_complexity Low_complexity 1 46 0 947 163 33 0 chr11 16617597 16617750 -134165803 - FRAM SINE Alu -26 150 1 277 259 141 0 chr11 16619086 16619171 -134164382 - MIR SINE MIR -102 160 64 531 82 0 0 chr11 16619771 16619844 -134163709 + (TGGA)n Simple_repeat Simple_repeat 2 74 0 201 39 0 0 chr11 16619843 16619869 -134163684 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 598 266 53 6 chr11 16619936 16620105 -134163448 + MER5B DNA MER1_type 1 177 -1 696 256 164 30 chr11 16620962 16621206 -134162347 + MER113 DNA MER1_type? 31 241 -280 369 43 0 0 chr11 16621206 16621253 -134162300 + (TC)n Simple_repeat Simple_repeat 2 48 0 696 256 164 30 chr11 16621253 16621411 -134162142 + MER113 DNA MER1_type? 241 487 -34 22 35 0 0 chr11 16624216 16624245 -134159308 + AT_rich Low_complexity Low_complexity 1 29 0 521 319 88 0 chr11 16624671 16624875 -134158678 + MIR SINE MIR 31 252 -10 825 217 38 19 chr11 16625357 16625569 -134157984 + MER20 DNA MER1_type 4 219 0 22 35 0 0 chr11 16626350 16626379 -134157174 + AT_rich Low_complexity Low_complexity 1 29 0 231 389 160 0 chr11 16628342 16628486 -134155067 + L2 LINE L2 3106 3272 0 415 230 40 32 chr11 16631249 16631375 -134152178 + MER94 DNA DNA 5 131 -3 227 267 89 22 chr11 16631414 16631504 -134152049 - MIR3 SINE MIR -24 184 89 186 43 0 0 chr11 16631695 16631718 -134151835 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 232 261 62 0 chr11 16632362 16632427 -134151126 + L2 LINE L2 3235 3303 -10 269 383 30 18 chr11 16633398 16633565 -134149988 + L3b LINE CR1 1269 1437 -146 388 368 0 30 chr11 16633682 16633815 -134149738 - L2 LINE L2 -5 3267 3139 1961 149 3 0 chr11 16633815 16634117 -134149436 + AluSx SINE Alu 1 303 -9 396 376 82 46 chr11 16634398 16634439 -134149114 - L2 LINE L2 -342 2972 2934 273 57 0 0 chr11 16634439 16634474 -134149079 + (TG)n Simple_repeat Simple_repeat 2 36 0 396 376 82 46 chr11 16634474 16634735 -134148818 - L2 LINE L2 -380 2934 2659 21 0 0 0 chr11 16635430 16635451 -134148102 + AT_rich Low_complexity Low_complexity 1 21 0 994 154 0 0 chr11 16635477 16635633 -134147920 - MER2 DNA MER2_type -135 210 55 1599 161 20 26 chr11 16636206 16636510 -134147043 + AluJo SINE Alu 1 302 -10 288 77 0 0 chr11 16636876 16636915 -134146638 + (T)n Simple_repeat Simple_repeat 1 39 0 27 49 0 0 chr11 16637774 16637815 -134145738 + AT_rich Low_complexity Low_complexity 1 41 0 871 224 0 0 chr11 16638252 16638426 -134145127 + FRAM SINE Alu 1 167 -9 282 277 129 0 chr11 16640218 16640358 -134143195 - MIR SINE MIR -64 144 26 217 393 35 14 chr11 16640583 16640728 -134142825 - MIR3 SINE MIR -41 167 20 864 259 53 0 chr11 16641139 16641382 -134142171 - MIR SINE MIR 0 262 7 2274 107 0 0 chr11 16641855 16642163 -134141390 - AluSx SINE Alu 0 312 5 1734 88 0 80 chr11 16643059 16643376 -134140177 - AluSq SINE Alu 0 328 34 259 280 15 76 chr11 16644426 16644558 -134138995 - MIR SINE MIR -134 128 5 216 232 29 58 chr11 16645785 16645854 -134137699 + L2 LINE L2 3230 3296 -17 2105 104 3 36 chr11 16645857 16646165 -134137388 + AluSx SINE Alu 1 298 -14 467 235 26 17 chr11 16646197 16646312 -134137241 + MER94 DNA DNA 10 125 -9 225 151 38 0 chr11 16646517 16646570 -134136983 + (TA)n Simple_repeat Simple_repeat 1 55 0 2816 10 0 0 chr11 16646656 16646966 -134136587 - AluYa5 SINE Alu -1 310 1 27 49 0 0 chr11 16646987 16647028 -134136525 + AT_rich Low_complexity Low_complexity 1 41 0 690 124 16 0 chr11 16649040 16649161 -134134392 + L1MA8 LINE L1 6169 6291 0 620 280 42 26 chr11 16649781 16649970 -134133583 - MIR3 SINE MIR -1 207 16 484 294 150 0 chr11 16650809 16650962 -134132591 + MIR3 SINE MIR 8 183 -25 691 256 135 9 chr11 16651492 16651722 -134131831 + MIR SINE MIR 3 261 -1 226 287 90 25 chr11 16651915 16652037 -134131516 + L2 LINE L2 2715 2844 -470 235 280 11 11 chr11 16652229 16652322 -134131231 + L1ME LINE L1 5717 5809 -353 2323 67 27 0 chr11 16652354 16652654 -134130899 + AluY SINE Alu 1 308 -3 329 296 112 0 chr11 16652654 16652752 -134130801 - L2 LINE L2 -1 3312 3204 29 28 0 0 chr11 16652807 16652843 -134130710 + AT_rich Low_complexity Low_complexity 1 36 0 829 183 0 0 chr11 16653371 16653513 -134130040 + Charlie1a DNA MER1_type 72 213 -1242 2389 184 108 19 chr11 16653531 16654372 -134129181 + Charlie1a DNA MER1_type 461 1455 0 1674 169 10 3 chr11 16654507 16654802 -134128751 + AluSx SINE Alu 1 297 -15 328 351 15 22 chr11 16654875 16655009 -134128544 + MIR SINE MIR 48 180 -82 3265 137 21 14 chr11 16655036 16655604 -134127949 + L1MB8 LINE L1 5505 6076 -102 1124 314 66 35 chr11 16655806 16656454 -134127099 - L2 LINE L2 -72 3241 2570 550 289 47 33 chr11 16656454 16656665 -134126888 - LTR33 LTR ERVL -30 491 278 525 327 96 19 chr11 16656691 16656899 -134126654 - LTR33 LTR ERVL -297 224 1 562 271 90 12 chr11 16656901 16657067 -134126486 - L2 LINE L2 -841 2473 2295 21 100 0 0 chr11 16657441 16657511 -134126042 + AT_rich Low_complexity Low_complexity 1 70 0 624 265 176 43 chr11 16657531 16657836 -134125717 - L1ME LINE L1 -367 5754 5413 845 227 30 5 chr11 16659039 16659242 -134124311 + MER3 DNA MER1_type 2 209 0 2248 106 0 0 chr11 16659781 16660082 -134123471 - AluSg SINE Alu -9 301 1 197 95 0 24 chr11 16660878 16660920 -134122633 + (TTTTTG)n Simple_repeat Simple_repeat 4 44 0 521 342 78 8 chr11 16660994 16661237 -134122316 + MIR SINE MIR 3 262 0 209 298 0 0 chr11 16661338 16661395 -134122158 + L2 LINE L2 3255 3311 -2 226 261 14 29 chr11 16661404 16661473 -134122080 + L3 LINE CR1 1497 1564 -13 216 255 35 103 chr11 16665711 16665856 -134117697 - MIR SINE MIR -28 234 100 4767 185 98 38 chr11 16666096 16667296 -134116257 + Charlie1a DNA MER1_type 1 1271 -184 644 202 0 0 chr11 16667299 16667413 -134116140 - AluJo SINE Alu -64 248 135 731 179 0 15 chr11 16667414 16667548 -134116005 - AluJo SINE Alu -170 132 1 447 173 115 32 chr11 16667558 16667714 -134115839 + Charlie1a DNA MER1_type 1282 1450 -5 24 0 0 0 chr11 16667938 16667962 -134115591 + AT_rich Low_complexity Low_complexity 1 24 0 328 366 23 0 chr11 16669881 16670012 -134113541 + MIR3 SINE MIR 75 208 0 28 61 0 0 chr11 16670155 16670204 -134113349 + AT_rich Low_complexity Low_complexity 1 49 0 219 36 0 0 chr11 16671354 16671382 -134112171 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 326 335 77 0 chr11 16672025 16672180 -134111373 + MIR SINE MIR 47 213 -49 228 282 28 14 chr11 16672300 16672371 -134111182 - L3 LINE CR1 -23 1554 1483 180 39 0 0 chr11 16672431 16672457 -134111096 - L2 LINE L2 0 3313 3288 862 191 66 0 chr11 16672475 16672627 -134110926 - AluJb SINE Alu -19 293 132 201 146 24 49 chr11 16672627 16672668 -134110885 - L2 LINE L2 -11 3302 3263 297 331 52 64 chr11 16672830 16672950 -134110603 - L3 LINE CR1 -364 1213 1094 2221 110 0 0 chr11 16672950 16673249 -134110304 + AluSx SINE Alu 1 299 -13 297 331 52 64 chr11 16673249 16673300 -134110253 - L3 LINE CR1 -483 1094 1044 23 78 0 0 chr11 16673326 16673377 -134110176 + AT_rich Low_complexity Low_complexity 1 51 0 1509 199 10 3 chr11 16673519 16673825 -134109728 + L1MA9 LINE L1 5967 6274 -38 21 71 0 0 chr11 16674005 16674047 -134109506 + AT_rich Low_complexity Low_complexity 1 42 0 508 276 115 56 chr11 16674262 16674672 -134108881 + L1ME4a LINE L1 2924 3357 -2789 359 265 103 47 chr11 16675436 16675670 -134107883 + L1ME4a LINE L1 4279 4525 -1621 252 352 51 21 chr11 16675806 16676138 -134107415 + L1ME4a LINE L1 4717 5058 -1088 825 290 109 39 chr11 16676285 16677089 -134106464 + L1ME4a LINE L1 5258 6118 -3 706 206 60 112 chr11 16678609 16678761 -134104792 - MIR SINE MIR 0 262 128 2200 114 3 0 chr11 16678761 16679069 -134104484 + AluSc SINE Alu 1 309 0 706 206 60 112 chr11 16679069 16679183 -134104370 - MIR SINE MIR -134 128 10 23 33 0 0 chr11 16679726 16679756 -134103797 + AT_rich Low_complexity Low_complexity 1 30 0 195 100 0 0 chr11 16681125 16681155 -134102398 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 25 51 0 0 chr11 16682749 16682788 -134100765 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr11 16683157 16683185 -134100368 + AT_rich Low_complexity Low_complexity 1 28 0 207 100 0 0 chr11 16684329 16684359 -134099194 + (TC)n Simple_repeat Simple_repeat 1 30 0 369 0 0 0 chr11 16685305 16685346 -134098207 + (TG)n Simple_repeat Simple_repeat 1 41 0 322 295 50 36 chr11 16685766 16685905 -134097648 - MIR3 SINE MIR -19 189 49 390 248 110 97 chr11 16686735 16687045 -134096508 + MLT1K LTR MaLR 263 576 -12 1851 163 77 6 chr11 16687173 16687498 -134096055 + MER7A DNA MER2_type 1 346 0 231 224 35 94 chr11 16688184 16688269 -134095284 - MIR SINE MIR -3 259 180 190 281 67 79 chr11 16688377 16688466 -134095087 + L2 LINE L2 3158 3245 -27 2867 224 42 33 chr11 16688549 16689343 -134094210 - L1ME2 LINE L1 -9 6224 5424 2098 268 36 8 chr11 16689366 16689777 -134093776 - L1ME2 LINE L1 -890 5325 4886 237 83 0 0 chr11 16689777 16689813 -134093740 + (TG)n Simple_repeat Simple_repeat 2 37 0 2098 268 36 8 chr11 16689813 16690072 -134093481 - L1ME2 LINE L1 -1329 4886 4636 2988 231 74 20 chr11 16690083 16691755 -134091798 - L1ME2 LINE L1 -3116 3099 1370 26 30 0 0 chr11 16691764 16691797 -134091756 + AT_rich Low_complexity Low_complexity 1 33 0 3106 173 28 16 chr11 16691797 16692439 -134091114 - L1MA3 LINE L1 0 6305 5656 2320 112 38 16 chr11 16692439 16692806 -134090747 - THE1C LTR MaLR 0 375 1 10418 111 28 12 chr11 16692806 16693845 -134089708 - THE1C-int LTR MaLR 0 1580 508 2085 116 13 19 chr11 16693845 16694155 -134089398 + AluSc SINE Alu 1 308 -1 10418 111 28 12 chr11 16694155 16694670 -134088883 - THE1C-int LTR MaLR -1072 508 2 548 325 22 4 chr11 16694730 16694958 -134088595 - L1ME2 LINE L1 -6145 251 20 246 150 0 0 chr11 16695089 16695129 -134088424 + Charlie3 DNA MER1_type 1 40 -2670 227 207 46 81 chr11 16695124 16695211 -134088342 - Charlie3 DNA MER1_type -2394 316 233 * 739 189 0 0 chr11 16695140 16695262 -134088291 + Charlie3 DNA MER1_type 134 255 -2455 3039 263 149 17 chr11 16695366 16697202 -134086351 + L1ME3 LINE L1 2187 4238 -1977 * 11045 195 61 28 chr11 16697197 16698095 -134085458 + L1MC1 LINE L1 4 871 -5742 2155 114 0 3 chr11 16698095 16698393 -134085160 + AluSp SINE Alu 1 297 -16 11045 195 61 28 chr11 16698393 16701743 -134081810 + L1MC1 LINE L1 871 4528 -2085 203 0 37 0 chr11 16701743 16701770 -134081783 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 11045 195 61 28 chr11 16701770 16703850 -134079703 + L1MC1 LINE L1 4528 6538 -75 419 224 9 0 chr11 16703852 16703959 -134079594 + (TA)n Simple_repeat Simple_repeat 2 109 0 389 146 37 0 chr11 16703960 16704042 -134079511 + L1MC2 LINE L1 6260 6344 0 996 238 110 23 chr11 16704045 16704718 -134078835 + L1ME3 LINE L1 4248 5990 -243 850 217 16 68 chr11 16704818 16705067 -134078486 + L1ME3 LINE L1 5989 6224 -7 261 0 0 0 chr11 16705077 16705106 -134078447 + (TG)n Simple_repeat Simple_repeat 2 30 0 209 189 0 0 chr11 16705106 16705143 -134078410 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 2156 87 7 3 chr11 16705143 16705429 -134078124 - AluY SINE Alu -22 289 3 618 320 43 68 chr11 16705900 16706410 -134077143 + L2 LINE L2 2756 3271 -1 220 239 0 0 chr11 16708272 16708318 -134075235 + (TAA)n Simple_repeat Simple_repeat 3 48 0 378 245 49 0 chr11 16708891 16708993 -134074560 - L1MC4 LINE L1 -14 8028 7922 2701 255 72 20 chr11 16709017 16709934 -134073619 - L1MC4a LINE L1 -1432 6376 5412 5512 229 47 23 chr11 16709945 16713454 -134070099 + L1MA7 LINE L1 44 6349 -11 773 200 27 85 chr11 16713527 16713787 -134069766 + L1MB4 LINE L1 2329 2573 -3573 1183 292 65 56 chr11 16713812 16715175 -134068378 - L1MC4a LINE L1 -751 5395 4020 4284 178 35 20 chr11 16715220 16715770 -134067783 + L1MB4 LINE L1 5239 5808 -372 246 32 0 0 chr11 16715770 16715801 -134067752 + (CA)n Simple_repeat Simple_repeat 2 32 0 4284 178 35 20 chr11 16715801 16716179 -134067374 + L1MB4 LINE L1 5808 6179 -1 461 304 68 32 chr11 16716203 16717189 -134066364 - L1MC4a LINE L1 -2182 3964 2933 1983 243 58 64 chr11 16718786 16719634 -134063919 + HAL1b LINE L1 469 1311 -37 231 267 23 23 chr11 16720155 16720241 -134063312 + L1MC5 LINE L1 7832 7917 -44 1815 75 0 56 chr11 16720329 16720596 -134062957 + AluY SINE Alu 39 290 -21 216 0 0 0 chr11 16720599 16720623 -134062930 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 311 352 9 0 chr11 16721176 16721281 -134062272 - MIR SINE MIR -125 137 32 232 258 0 48 chr11 16721530 16721592 -134061961 + LTR67 LTR ERVL 99 157 -400 * 319 256 30 58 chr11 16721547 16721651 -134061902 + MLT1L LTR MaLR 111 276 -310 237 262 63 19 chr11 16721812 16721926 -134061627 + MLT1J LTR MaLR 384 584 -31 214 315 68 14 chr11 16722041 16722114 -134061439 + MIR SINE MIR 172 248 -14 1604 191 16 55 chr11 16722255 16722638 -134060915 + MLT1A2 LTR MaLR 1 368 -6 564 317 122 5 chr11 16722933 16723154 -134060399 + MIR SINE MIR 5 251 -11 228 122 0 0 chr11 16727099 16727140 -134056413 + (TA)n Simple_repeat Simple_repeat 2 42 0 25 51 0 0 chr11 16727369 16727408 -134056145 + AT_rich Low_complexity Low_complexity 1 39 0 26 50 0 0 chr11 16727790 16727830 -134055723 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr11 16727958 16727979 -134055574 + AT_rich Low_complexity Low_complexity 1 21 0 479 84 42 0 chr11 16728152 16728247 -134055306 + (TA)n Simple_repeat Simple_repeat 1 99 0 32 43 0 0 chr11 16728438 16728484 -134055069 + AT_rich Low_complexity Low_complexity 1 46 0 517 320 13 7 chr11 16729658 16729808 -134053745 - L2 LINE L2 0 3272 3122 21 0 0 0 chr11 16730141 16730162 -134053391 + AT_rich Low_complexity Low_complexity 1 21 0 2095 109 0 3 chr11 16730386 16730670 -134052883 + AluSp SINE Alu 4 286 -27 27 62 0 0 chr11 16730674 16730722 -134052831 + AT_rich Low_complexity Low_complexity 1 48 0 278 281 16 0 chr11 16730743 16730807 -134052746 + L2 LINE L2 3208 3272 0 369 204 0 34 chr11 16732012 16732100 -134051453 + L1MC5 LINE L1 7831 7915 -46 440 18 18 0 chr11 16732375 16732432 -134051121 + (TC)n Simple_repeat Simple_repeat 1 58 0 279 0 0 0 chr11 16732431 16732462 -134051091 + (CA)n Simple_repeat Simple_repeat 1 31 0 * 438 36 0 0 chr11 16736354 16736410 -134047143 + (TA)n Simple_repeat Simple_repeat 1 56 0 378 235 0 0 chr11 16736488 16736590 -134046963 + (TGAA)n Simple_repeat Simple_repeat 3 104 0 22 80 0 0 chr11 16742142 16742192 -134041361 + AT_rich Low_complexity Low_complexity 1 50 0 854 201 69 0 chr11 16746545 16746719 -134036834 - MER5A DNA MER1_type -3 186 1 455 338 187 19 chr11 16746963 16747620 -134035933 + L2 LINE L2 2260 3029 -243 2057 132 3 0 chr11 16747690 16748001 -134035552 - AluSx SINE Alu 0 312 1 909 266 22 62 chr11 16748253 16748472 -134035081 - L1M4 LINE L1 -1554 4592 4366 2029 130 3 3 chr11 16748472 16748787 -134034766 - AluSx SINE Alu 0 315 1 909 266 22 62 chr11 16748787 16748821 -134034732 - L1M4 LINE L1 -1780 4366 4332 1677 178 24 68 chr11 16748821 16749203 -134034350 + MLT1A1 LTR MaLR 1 365 0 909 266 22 62 chr11 16749203 16749299 -134034254 - L1M4 LINE L1 -1814 4332 4256 192 77 0 0 chr11 16749299 16749325 -134034228 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 909 266 22 62 chr11 16749325 16749374 -134034179 - L1M4 LINE L1 -1890 4256 4207 * 4686 209 24 38 chr11 16749370 16750884 -134032669 + L1MD2 LINE L1 4872 6358 -1 2266 110 0 3 chr11 16751185 16751495 -134032058 - AluSc SINE Alu 0 309 1 250 398 24 0 chr11 16752940 16753063 -134030490 - MIR3 SINE MIR -37 171 46 610 257 75 50 chr11 16753721 16754040 -134029513 + L1ME3A LINE L1 5627 5953 -217 240 235 0 0 chr11 16755840 16755891 -134027662 + (TAA)n Simple_repeat Simple_repeat 2 52 0 548 244 55 0 chr11 16755906 16756033 -134027520 - MIR SINE MIR -57 205 72 771 276 45 12 chr11 16756043 16756286 -134027267 - MIR SINE MIR -11 251 1 201 264 0 0 chr11 16757527 16757580 -134025973 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 338 350 90 52 chr11 16758258 16758781 -134024772 + L2 LINE L2 2306 2848 -466 241 346 69 8 chr11 16758833 16758963 -134024590 + L2 LINE L2 2933 3070 -202 1633 200 67 24 chr11 16759182 16759504 -134024049 + Charlie4a DNA MER1_type 24 375 -1586 1892 102 64 4 chr11 16759504 16759790 -134023763 - AluSc SINE Alu 0 302 1 1633 200 67 24 chr11 16759790 16759931 -134023622 + Charlie4a DNA MER1_type 375 508 0 1699 338 40 28 chr11 16760106 16760920 -134022633 - L3 LINE CR1 -78 1499 676 28 29 0 0 chr11 16760938 16760973 -134022580 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr11 16761805 16761847 -134021706 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chr11 16762590 16762635 -134020918 + AT_rich Low_complexity Low_complexity 1 45 0 29 0 0 0 chr11 16763330 16763359 -134020194 + AT_rich Low_complexity Low_complexity 1 29 0 3716 40 44 4 chr11 16763934 16764412 -134019141 - L1PA5 LINE L1 0 6154 5658 206 301 0 78 chr11 16765059 16765162 -134018391 + MIR SINE MIR 168 262 0 475 146 0 0 chr11 16765282 16765364 -134018189 + L1MB8 LINE L1 6088 6169 -9 200 267 67 0 chr11 16765397 16765457 -134018096 + L2 LINE L2 3200 3263 -9 2229 115 142 5 chr11 16766733 16767106 -134016447 + MSTA LTR MaLR 1 424 -4 308 274 143 24 chr11 16767196 16767364 -134016189 - MER5A DNA MER1_type -1 188 1 276 339 48 0 chr11 16768080 16768204 -134015349 + L2 LINE L2 2926 3055 -217 1606 195 3 10 chr11 16768474 16768787 -134014766 + AluJo SINE Alu 1 311 -1 330 339 6 12 chr11 16768943 16769111 -134014442 + L1ME4a LINE L1 5708 5874 -247 635 125 8 33 chr11 16769143 16769263 -134014290 - L1MA5 LINE L1 0 6300 6184 1671 159 79 3 chr11 16769264 16769579 -134013974 + L1MA4 LINE L1 5750 6088 -212 287 221 148 27 chr11 16769595 16769744 -134013809 + L1ME4a LINE L1 5955 6121 0 359 284 74 45 chr11 16769812 16770055 -134013498 + L1ME4a LINE L1 5870 6119 -2 680 318 70 37 chr11 16770241 16770304 -134013249 - L3 LINE CR1 -170 1407 1347 1506 135 69 101 chr11 16770304 16770681 -134012872 + MLT1A1 LTR MaLR 1 365 0 680 318 70 37 chr11 16770681 16770991 -134012562 - L3 LINE CR1 -230 1347 1022 854 276 71 77 chr11 16771253 16771785 -134011768 - MLT1F1 LTR MaLR 0 567 39 323 257 129 0 chr11 16771787 16771888 -134011665 + MIR SINE MIR 149 262 0 1379 248 13 6 chr11 16772608 16772922 -134010631 + MER90 LTR ERV1 297 612 -2 310 261 42 8 chr11 16772922 16773028 -134010525 + MER97c DNA MER1_type? 59 168 -922 880 266 23 53 chr11 16774058 16774321 -134009232 + MIR SINE MIR 6 260 -2 781 298 172 25 chr11 16774319 16774715 -134008838 - L3 LINE CR1 -82 1495 1042 * 2070 118 0 10 chr11 16774844 16775150 -134008403 + AluSx SINE Alu 1 303 -9 512 315 67 6 chr11 16775295 16775473 -134008080 - MIR3 SINE MIR -1 207 19 2311 105 0 0 chr11 16779006 16779301 -134004252 - AluSx SINE Alu -17 295 1 1066 294 113 36 chr11 16780945 16781725 -134001828 + L2 LINE L2 2457 3288 -25 189 74 0 0 chr11 16782923 16782950 -134000603 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr11 16783397 16783419 -134000134 + AT_rich Low_complexity Low_complexity 1 22 0 780 340 84 22 chr11 16783621 16784350 -133999203 + L2 LINE L2 2529 3312 -1 188 196 0 20 chr11 16792586 16792637 -133990916 + GA-rich Low_complexity Low_complexity 3 52 0 22 70 0 0 chr11 16793083 16793126 -133990427 + AT_rich Low_complexity Low_complexity 1 43 0 1983 148 7 0 chr11 16793909 16794214 -133989339 + AluSx SINE Alu 1 307 -5 1099 59 7 7 chr11 16794228 16794381 -133989172 + (GGAA)n Simple_repeat Simple_repeat 2 154 0 484 226 21 0 chr11 16795394 16795487 -133988066 + L2 LINE L2 3197 3291 -22 205 387 45 18 chr11 16796485 16796596 -133986957 + L2 LINE L2 3144 3257 -15 524 121 11 0 chr11 16796831 16796922 -133986631 + (TGGA)n Simple_repeat Simple_repeat 3 94 0 678 269 15 92 chr11 16796946 16797206 -133986347 - MIR SINE MIR -4 258 19 23 54 0 0 chr11 16797227 16797264 -133986289 + AT_rich Low_complexity Low_complexity 1 37 0 403 299 116 6 chr11 16798716 16798880 -133984673 + MIR SINE MIR 71 252 -10 211 136 114 0 chr11 16803351 16803395 -133980158 + MIR SINE MIR 98 146 -62 408 347 89 79 chr11 16803511 16804066 -133979487 - L2 LINE L2 -1 3271 2709 726 252 60 17 chr11 16804419 16804653 -133978900 - MIR SINE MIR -16 246 3 464 369 95 0 chr11 16804664 16804843 -133978710 - MIR SINE MIR -12 250 55 186 306 83 28 chr11 16804896 16805004 -133978549 + L2 LINE L2 2937 3050 -222 207 271 83 52 chr11 16805202 16805298 -133978255 + L2 LINE L2 3168 3266 -6 2341 94 0 0 chr11 16805329 16805637 -133977916 + AluY SINE Alu 1 308 -3 661 255 21 37 chr11 16805698 16805886 -133977667 - MIR SINE MIR -73 189 5 218 318 129 41 chr11 16806526 16806696 -133976857 - MIR SINE MIR -15 247 63 428 211 128 9 chr11 16807612 16807721 -133975832 - L2 LINE L2 0 3313 3192 207 298 0 0 chr11 16807720 16807767 -133975786 + L3 LINE CR1 1520 1566 -11 * 223 227 182 30 chr11 16807820 16807886 -133975667 + L2 LINE L2 3196 3271 -1 1041 165 80 31 chr11 16807900 16808124 -133975429 + MER46A DNA MER2_type 2 236 0 548 320 23 6 chr11 16808418 16808590 -133974963 - MIR3 SINE MIR -31 177 3 456 236 37 47 chr11 16809065 16809230 -133974323 + MIR SINE MIR 2 172 -62 299 297 164 23 chr11 16809398 16809526 -133974027 + MIR SINE MIR 2 147 -115 1801 158 48 6 chr11 16809579 16809895 -133973658 + MER44D DNA MER2_type 11 609 0 336 127 0 0 chr11 16809895 16809950 -133973603 + (TG)n Simple_repeat Simple_repeat 2 56 0 22 56 0 0 chr11 16809961 16809997 -133973556 + AT_rich Low_complexity Low_complexity 1 36 0 241 260 220 20 chr11 16811047 16811197 -133972356 - MIR SINE MIR -70 192 13 911 207 62 0 chr11 16812500 16812693 -133970860 - MER6B DNA MER2_type -4 206 2 1298 175 0 0 chr11 16812892 16813098 -133970455 + AluJb SINE Alu 82 287 -25 1527 184 85 14 chr11 16813120 16813565 -133969988 + L1ME4a LINE L1 4890 5366 -780 689 181 49 7 chr11 16813565 16813709 -133969844 + BC200 scRNA scRNA 1 150 -50 636 169 39 8 chr11 16813711 16813841 -133969712 + L1ME4a LINE L1 5361 5494 -680 522 316 125 8 chr11 16813842 16814098 -133969455 + L2 LINE L2 2970 3255 -58 575 264 119 34 chr11 16814333 16814897 -133968656 + LTR50 LTR ERVL 1 683 -112 2882 234 30 30 chr11 16815206 16816228 -133967325 + L2 LINE L2 2292 3308 -5 789 159 38 0 chr11 16816391 16816523 -133967030 - Tigger4(Zombi) DNA MER2_type -2594 137 1 247 257 0 14 chr11 16816523 16816593 -133966960 + MIR SINE MIR 194 262 0 871 140 0 7 chr11 16818414 16818564 -133964989 + (GGAA)n Simple_repeat Simple_repeat 1 149 0 413 257 0 80 chr11 16819947 16820060 -133963493 - MIR SINE MIR -69 139 36 3924 51 12 0 chr11 16820301 16820793 -133962760 + L1PA7 LINE L1 5649 6146 -8 286 216 20 49 chr11 16821466 16821568 -133961985 + GA-rich Low_complexity Low_complexity 4 102 0 662 266 61 5 chr11 16822529 16822743 -133960810 + L1ME4a LINE L1 5531 5756 -365 336 120 20 0 chr11 16822765 16822815 -133960738 - L2 LINE L2 -3 3269 3219 283 258 7 80 chr11 16822882 16823033 -133960520 + L1ME4a LINE L1 4564 4703 -1443 22 35 0 0 chr11 16823256 16823285 -133960268 + AT_rich Low_complexity Low_complexity 1 29 0 799 234 22 63 chr11 16823523 16823745 -133959808 - MIR SINE MIR -27 235 23 1257 261 77 31 chr11 16823751 16823795 -133959758 + L1ME4a LINE L1 5327 5368 -753 2186 114 3 0 chr11 16823795 16824094 -133959459 + AluSp SINE Alu 1 300 -13 1257 261 77 31 chr11 16824094 16824645 -133958908 + L1ME4a LINE L1 5368 5943 -178 351 264 169 20 chr11 16824826 16825080 -133958473 + L1ME4a LINE L1 5830 6121 0 269 313 38 0 chr11 16825531 16825611 -133957942 + MIR SINE MIR 57 139 -123 318 188 47 0 chr11 16827438 16827502 -133956051 - MIR SINE MIR -182 80 14 687 287 70 3 chr11 16828043 16828243 -133955310 + MIR SINE MIR 42 250 -12 213 304 78 26 chr11 16828258 16828373 -133955180 + MIR SINE MIR 136 256 -6 236 235 24 35 chr11 16828738 16828823 -133954730 + L1ME4a LINE L1 5985 6068 -53 220 336 47 62 chr11 16829696 16829825 -133953728 - MIR SINE MIR -96 112 35 353 362 104 26 chr11 16830968 16831523 -133952030 + L2 LINE L2 2681 3233 -39 628 222 40 45 chr11 16831721 16831897 -133951656 - MER5B DNA MER1_type 0 178 4 25 51 0 0 chr11 16832341 16832380 -133951173 + AT_rich Low_complexity Low_complexity 1 39 0 2795 244 95 5 chr11 16832504 16833378 -133950175 - L1M4 LINE L1 -1945 4201 3249 895 209 97 81 chr11 16833410 16833692 -133949861 - L1MDa LINE L1 -4821 1259 966 1606 174 10 23 chr11 16833692 16833996 -133949557 - AluJo SINE Alu -12 300 1 895 209 97 81 chr11 16833996 16834168 -133949385 - L1MDa LINE L1 -5114 966 798 1304 267 112 41 chr11 16834174 16834298 -133949255 - L1MDa LINE L1 -5408 662 548 2467 67 0 6 chr11 16834298 16834611 -133948942 + AluY SINE Alu 1 311 0 1304 267 112 41 chr11 16834611 16835051 -133948502 - L1MDa LINE L1 -5522 548 58 501 323 113 60 chr11 16835141 16835296 -133948257 + L2 LINE L2 2901 3046 -226 4998 77 6 0 chr11 16835296 16835960 -133947593 + L1PA7 LINE L1 5485 6152 -2 501 323 113 60 chr11 16835960 16836157 -133947396 + L2 LINE L2 3046 3272 0 283 279 184 0 chr11 16836563 16836699 -133946854 + L1MC4a LINE L1 5725 5885 -1923 301 200 0 0 chr11 16836919 16836974 -133946579 - L2 LINE L2 -2 3311 3257 493 352 68 8 chr11 16837601 16837851 -133945702 - L3 LINE CR1 -127 1450 1186 246 253 0 101 chr11 16838622 16838701 -133944852 + MIR SINE MIR 112 182 -80 700 337 97 31 chr11 16839755 16840280 -133943273 - L2 LINE L2 -11 3302 2748 225 203 241 13 chr11 16840795 16840874 -133942679 + MIR SINE MIR 166 262 0 202 194 0 0 chr11 16841004 16841040 -133942513 + (CA)n Simple_repeat Simple_repeat 1 36 0 22 35 0 0 chr11 16841653 16841682 -133941871 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr11 16841835 16841870 -133941683 + AT_rich Low_complexity Low_complexity 1 35 0 212 342 13 13 chr11 16842662 16842741 -133940812 + MER5A DNA MER1_type 7 85 -104 199 203 0 119 chr11 16842741 16842800 -133940753 + MER5A DNA MER1_type 138 189 0 29 60 0 0 chr11 16843494 16843544 -133940009 + AT_rich Low_complexity Low_complexity 1 50 0 500 268 24 71 chr11 16843610 16843836 -133939717 + MIR SINE MIR 6 216 -46 293 45 0 23 chr11 16843944 16843988 -133939565 + (TTTTA)n Simple_repeat Simple_repeat 1 43 0 672 186 0 9 chr11 16843989 16844102 -133939451 - FRAM SINE Alu -30 146 35 844 277 39 32 chr11 16844678 16844988 -133938565 - L2 LINE L2 -7 3306 2995 370 202 172 17 chr11 16845096 16845278 -133938275 + L1ME4a LINE L1 5716 5935 -186 436 293 0 0 chr11 16845281 16845387 -133938166 - L2 LINE L2 -1 3312 3207 339 357 23 0 chr11 16846169 16846298 -133937255 + MIR3 SINE MIR 67 198 -10 190 0 32 32 chr11 16846723 16846754 -133936799 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 33 25 0 0 chr11 16848453 16848493 -133935060 + AT_rich Low_complexity Low_complexity 1 40 0 870 255 213 25 chr11 16850929 16851351 -133932202 - MLT1H LTR MaLR -25 521 32 701 176 0 16 chr11 16852759 16852884 -133930669 - FLAM_A SINE Alu -10 132 10 435 254 117 19 chr11 16853529 16853785 -133929768 + L1M4 LINE L1 3632 3912 -2234 900 141 5 49 chr11 16853943 16854128 -133929425 + L1MA7 LINE L1 5877 6053 -238 462 148 67 104 chr11 16854129 16854264 -133929289 + L1MA7 LINE L1 6161 6290 -1 27 0 0 0 chr11 16854300 16854327 -133929226 + AT_rich Low_complexity Low_complexity 1 27 0 1851 171 0 7 chr11 16854527 16854832 -133928721 + AluJb SINE Alu 1 303 -9 183 80 0 0 chr11 16855037 16855062 -133928491 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr11 16856518 16856541 -133927012 + AT_rich Low_complexity Low_complexity 1 23 0 607 206 8 23 chr11 16856545 16856676 -133926877 + FLAM_A SINE Alu 1 129 -4 879 238 98 7 chr11 16856683 16856991 -133926562 - MLT1K LTR MaLR -48 540 176 2407 78 3 0 chr11 16857566 16857873 -133925680 - AluSq SINE Alu -5 308 1 231 294 105 49 chr11 16858101 16858244 -133925309 - L2 LINE L2 -3 3269 3119 2315 116 20 67 chr11 16859314 16859762 -133923791 + L1MA5 LINE L1 5870 6296 -4 324 157 0 0 chr11 16860761 16860812 -133922741 - L2 LINE L2 -2 3311 3261 23 0 0 0 chr11 16863577 16863600 -133919953 + AT_rich Low_complexity Low_complexity 1 23 0 436 271 83 38 chr11 16866666 16866799 -133916754 + MER91A DNA MER1_type 12 150 -46 1034 309 57 28 chr11 16866903 16867421 -133916132 + L2 LINE L2 2559 3088 -225 186 103 0 0 chr11 16867417 16867446 -133916107 + L2 LINE L2 3285 3313 0 * 357 319 0 11 chr11 16867491 16867585 -133915968 + L2 LINE L2 3221 3313 0 237 371 131 24 chr11 16867604 16868304 -133915249 - L2 LINE L2 -834 2480 1706 253 347 20 0 chr11 16868448 16868546 -133915007 - MIR SINE MIR -66 142 43 258 281 31 16 chr11 16869308 16869372 -133914181 + MIR SINE MIR 14 78 -184 * 514 208 42 0 chr11 16869365 16869461 -133914092 - L2 LINE L2 0 3313 3214 3108 170 7 12 chr11 16869461 16870026 -133913527 + L1PA13 LINE L1 4084 4645 -1501 1516 81 0 5 chr11 16870026 16870223 -133913330 + AluY SINE Alu 1 196 -115 956 203 0 0 chr11 16870325 16870512 -133913041 + AluY SINE Alu 125 311 0 3814 154 7 28 chr11 16870518 16870859 -133912694 + L1PA13 LINE L1 4631 4978 -1168 2795 3 0 0 chr11 16870859 16871163 -133912390 + AluYa5 SINE Alu 1 304 -7 3814 154 7 28 chr11 16871163 16871543 -133912010 + L1PA13 LINE L1 4978 5337 -809 7619 30 10 0 chr11 16871643 16873050 -133910503 - L1PA4 LINE L1 -296 5859 4441 5742 92 16 4 chr11 16873037 16873853 -133909700 + L1PA13 LINE L1 5336 6161 -2 * 487 252 69 8 chr11 16873931 16874062 -133909491 + MIR SINE MIR 64 202 -60 306 327 19 82 chr11 16874085 16874293 -133909260 + L2 LINE L2 2861 3055 -217 206 225 0 0 chr11 16874340 16874380 -133909173 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 955 230 148 89 chr11 16874380 16874427 -133909126 + L2 LINE L2 2584 2627 -686 1951 176 17 6 chr11 16874427 16874786 -133908767 + MLT1A1 LTR MaLR 3 365 0 955 230 148 89 chr11 16874786 16875401 -133908152 + L2 LINE L2 2627 3286 -27 23 33 0 0 chr11 16876474 16876504 -133907049 + AT_rich Low_complexity Low_complexity 1 30 0 402 258 62 16 chr11 16876629 16876757 -133906796 - MER5A DNA MER1_type 0 189 56 26 0 0 0 chr11 16878106 16878132 -133905421 + AT_rich Low_complexity Low_complexity 1 26 0 200 329 55 0 chr11 16878387 16878460 -133905093 - L2 LINE L2 -39 3274 3198 305 288 88 44 chr11 16878597 16878757 -133904796 + L2 LINE L2 3147 3313 0 22 35 0 0 chr11 16878867 16878896 -133904657 + AT_rich Low_complexity Low_complexity 1 29 0 1047 127 34 54 chr11 16879528 16879733 -133903820 + MLT1C LTR MaLR 267 467 0 195 323 121 46 chr11 16879836 16880136 -133903417 + L2 LINE L2 1635 1911 -1403 373 175 29 39 chr11 16880136 16880239 -133903314 + L1PA5 LINE L1 6052 6153 -1 195 323 121 46 chr11 16880239 16880542 -133903011 + L2 LINE L2 1911 2283 -1031 791 302 28 20 chr11 16880549 16880797 -133902756 + MIR SINE MIR 1 250 -12 1209 191 24 65 chr11 16880993 16881287 -133902266 + AluJo SINE Alu 1 282 -30 22 0 0 0 chr11 16881287 16881309 -133902244 + AT_rich Low_complexity Low_complexity 1 22 0 313 316 123 9 chr11 16881411 16881525 -133902028 + L2 LINE L2 3145 3271 -1 339 224 26 0 chr11 16881671 16881747 -133901806 - MIR SINE MIR -6 256 179 * 692 276 14 19 chr11 16881725 16881939 -133901614 + MIR SINE MIR 49 261 -1 258 152 0 0 chr11 16882134 16882180 -133901373 + MER4B-int LTR ERV1 1146 1191 -5567 21 0 0 0 chr11 16882205 16882226 -133901327 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr11 16885277 16885314 -133898239 + AT_rich Low_complexity Low_complexity 1 37 0 33 43 0 0 chr11 16886543 16886590 -133896963 + AT_rich Low_complexity Low_complexity 1 47 0 210 399 63 18 chr11 16886996 16887219 -133896334 + L2 LINE L2 2838 3070 -202 191 222 0 0 chr11 16887370 16887415 -133896138 + L2 LINE L2 3228 3272 0 218 298 18 0 chr11 16887450 16887507 -133896046 - L2 LINE L2 -5 3267 3210 22 56 0 0 chr11 16887553 16887589 -133895964 + AT_rich Low_complexity Low_complexity 1 36 0 698 187 8 0 chr11 16887589 16887723 -133895830 - L1PA16 LINE L1 -4 6162 6028 2373 88 0 0 chr11 16887753 16888050 -133895503 + AluSc SINE Alu 3 299 -10 322 244 42 14 chr11 16890210 16890341 -133893212 + GA-rich Low_complexity Low_complexity 1 134 0 708 189 6 17 chr11 16890890 16891070 -133892483 + CT-rich Low_complexity Low_complexity 3 180 0 27 49 0 0 chr11 16891201 16891242 -133892311 + AT_rich Low_complexity Low_complexity 1 41 0 445 269 113 31 chr11 16891274 16891434 -133892119 + MIR SINE MIR 20 192 -70 318 169 0 0 chr11 16891443 16891508 -133892045 + CT-rich Low_complexity Low_complexity 2 66 0 212 143 0 0 chr11 16891531 16891566 -133891987 + (GA)n Simple_repeat Simple_repeat 2 36 0 1163 233 25 33 chr11 16892820 16893095 -133890458 + AluJo SINE Alu 10 282 -30 2516 55 0 0 chr11 16893342 16893653 -133889900 - AluY SINE Alu 0 311 1 21 0 0 0 chr11 16893661 16893682 -133889871 + AT_rich Low_complexity Low_complexity 1 21 0 1801 158 11 3 chr11 16895015 16895300 -133888253 + AluJb SINE Alu 3 289 -23 373 161 47 29 chr11 16895818 16896076 -133887477 + AluJo SINE Alu 1 314 0 21 36 0 0 chr11 16899161 16899189 -133884364 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 16899203 16899224 -133884329 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr11 16899335 16899361 -133884192 + AT_rich Low_complexity Low_complexity 1 26 0 25 83 0 0 chr11 16899447 16899507 -133884046 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr11 16900224 16900247 -133883306 + AT_rich Low_complexity Low_complexity 1 23 0 237 300 285 15 chr11 16901558 16901758 -133881795 - MIR SINE MIR -6 256 3 249 108 0 0 chr11 16902071 16902108 -133881445 + (ATG)n Simple_repeat Simple_repeat 2 38 0 220 343 250 0 chr11 16902314 16902422 -133881131 - L2 LINE L2 -1 3271 3137 250 87 22 0 chr11 16902468 16902514 -133881039 + L1MA3 LINE L1 6259 6305 0 235 185 54 109 chr11 16902664 16902756 -133880797 - MIR SINE MIR 0 262 176 3856 270 53 38 chr11 16902762 16904338 -133879215 + L1MEc LINE L1 201 1800 -4763 279 325 0 32 chr11 16906016 16906139 -133877414 + L2 LINE L2 3191 3309 -4 621 285 30 53 chr11 16907542 16907805 -133875748 - L2 LINE L2 0 3313 3057 232 235 103 15 chr11 16907788 16907856 -133875697 + MIR SINE MIR 159 232 -30 * 207 216 27 0 chr11 16907829 16907866 -133875687 + L2 LINE L2 3210 3247 -25 * 263 192 82 14 chr11 16908730 16908803 -133874750 + GA-rich Low_complexity Low_complexity 3 80 0 21 82 0 0 chr11 17010036 17010085 -133773468 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr11 17011463 17011499 -133772054 + AT_rich Low_complexity Low_complexity 1 36 0 607 204 72 0 chr11 17012398 17012550 -133771003 + L1MEc LINE L1 2274 2436 -3948 1780 156 3 35 chr11 17012658 17012972 -133770581 + AluJo SINE Alu 1 304 -8 477 0 0 0 chr11 17012972 17013025 -133770528 + (TA)n Simple_repeat Simple_repeat 2 54 0 2142 89 0 4 chr11 17013889 17014193 -133769360 - AluSg SINE Alu 0 303 1 762 215 45 25 chr11 17014380 17014580 -133768973 + L1MB5 LINE L1 5963 6166 -8 208 247 68 68 chr11 17017455 17017528 -133766025 + L2 LINE L2 3237 3309 -4 351 312 145 51 chr11 17017847 17018081 -133765472 - MIR SINE MIR 0 262 7 209 360 54 27 chr11 17018090 17018201 -133765352 - L2 LINE L2 -16 3256 3143 198 372 54 16 chr11 17018508 17018637 -133764916 + L2 LINE L2 2640 2773 -541 180 304 231 23 chr11 17018938 17019284 -133764269 - L2 LINE L2 -924 2390 1973 2373 89 0 3 chr11 17019610 17019914 -133763639 - AluY SINE Alu -8 303 1 7714 95 11 2 chr11 17019919 17021821 -133761732 - L1PA7 LINE L1 0 6154 4235 27524 99 8 30 chr11 17021921 17023516 -133760037 - L1P LINE L1 -802 5344 3715 879 107 0 0 chr11 17023516 17023637 -133759916 - AluY SINE Alu -6 305 185 27524 99 8 30 chr11 17023637 17027375 -133756178 - L1P LINE L1 -2431 3715 12 293 191 0 0 chr11 17027383 17027430 -133756123 + MSTB LTR MaLR 380 426 0 2128 252 112 18 chr11 17027430 17028344 -133755209 + L1MEc LINE L1 3090 4089 -2293 5556 239 73 14 chr11 17028348 17029112 -133754441 + L1M4 LINE L1 2 719 -5823 183 42 0 0 chr11 17029112 17029136 -133754417 + (TTG)n Simple_repeat Simple_repeat 2 25 0 5556 239 73 14 chr11 17029136 17029955 -133753598 + L1M4 LINE L1 719 1679 -4863 3669 59 2 6 chr11 17030066 17030542 -133753011 + L1PA6 LINE L1 5681 6154 0 1998 167 78 0 chr11 17030584 17030955 -133752598 - MSTA LTR MaLR -28 400 1 8342 166 50 31 chr11 17030955 17032575 -133750978 - MSTA-int LTR MaLR 0 1651 1 275 143 0 0 chr11 17032575 17032617 -133750936 - MSTB LTR MaLR 0 426 385 1189 184 16 98 chr11 17032622 17032938 -133750615 + AluJb SINE Alu 12 301 -11 1555 153 88 20 chr11 17032938 17033233 -133750320 - MSTB LTR MaLR -34 392 78 991 99 0 35 chr11 17033237 17033379 -133750174 - AluSq/x SINE Alu -176 137 1 3573 266 74 40 chr11 17033386 17033503 -133750050 - L1MEc LINE L1 -4602 1613 1501 700 195 0 0 chr11 17033503 17033626 -133749927 - FLAM_C SINE Alu -10 123 1 3573 266 74 40 chr11 17033626 17033777 -133749776 - L1MEc LINE L1 -4714 1501 1357 1765 164 32 4 chr11 17033777 17034057 -133749496 - AluJb SINE Alu -22 290 3 3573 266 74 40 chr11 17034057 17035363 -133748190 - L1MEc LINE L1 -4858 1357 38 1812 149 53 0 chr11 17035724 17036006 -133747547 - AluSx SINE Alu -15 297 1 426 263 213 0 chr11 17036500 17036660 -133746893 + MIR SINE MIR 69 262 0 1773 186 3 3 chr11 17037310 17037622 -133745931 + AluJo SINE Alu 1 312 0 336 48 0 0 chr11 17037842 17037884 -133745669 + (TG)n Simple_repeat Simple_repeat 1 42 0 1550 114 122 4 chr11 17037900 17038145 -133745408 - AluSg SINE Alu -36 274 1 271 284 87 0 chr11 17038550 17038677 -133744876 - L1ME4a LINE L1 -195 5926 5789 286 270 0 0 chr11 17038704 17038778 -133744775 - MER116 DNA Mariner -6 74 1 456 272 80 31 chr11 17038778 17039002 -133744551 - L1ME4a LINE L1 -352 5769 5535 1721 187 17 0 chr11 17040041 17040341 -133743212 + AluJo SINE Alu 1 305 -7 2136 152 6 3 chr11 17040558 17040901 -133742652 - MER2 DNA MER2_type 0 344 1 1570 158 9 80 chr11 17041503 17041839 -133741714 + AluSx SINE Alu 1 312 0 425 326 7 54 chr11 17042047 17042194 -133741359 + MIR3 SINE MIR 48 187 -21 207 281 0 62 chr11 17042215 17042250 -133741303 - L2 LINE L2 -4 3268 3237 14899 119 34 16 chr11 17042250 17043147 -133740406 - Tigger1 DNA MER2_type -1 2417 1538 1985 103 88 0 chr11 17043147 17043419 -133740134 + AluSx SINE Alu 1 296 -16 14899 119 34 16 chr11 17043419 17044895 -133738658 - Tigger1 DNA MER2_type -880 1538 1 207 281 0 62 chr11 17044895 17044923 -133738630 - L2 LINE L2 -35 3237 3209 438 299 120 32 chr11 17044944 17045161 -133738392 - MIR SINE MIR -12 250 15 280 256 145 51 chr11 17045213 17045330 -133738223 + MER5A DNA MER1_type 35 162 -27 408 320 89 63 chr11 17045728 17046291 -133737262 - L2 LINE L2 0 3313 2741 1211 264 115 30 chr11 17046293 17046762 -133736791 + LTR33 LTR ERVL 1 509 -12 394 299 140 5 chr11 17047034 17047248 -133736305 + MIR SINE MIR 5 247 -15 1866 54 29 121 chr11 17047431 17047744 -133735809 + AluYb8 SINE Alu 16 299 -19 216 200 0 0 chr11 17048733 17048798 -133734755 + (TA)n Simple_repeat Simple_repeat 1 65 0 21 36 0 0 chr11 17049019 17049047 -133734506 + AT_rich Low_complexity Low_complexity 1 28 0 206 147 0 0 chr11 17049697 17049731 -133733822 + L2 LINE L2 3280 3313 0 247 259 214 18 chr11 17050278 17050390 -133733163 - MIR SINE MIR -12 250 117 * 258 311 0 0 chr11 17050388 17050449 -133733104 + L2 LINE L2 3211 3271 -1 2380 107 0 0 chr11 17050815 17051123 -133732430 + AluSx SINE Alu 1 308 -4 1766 195 0 7 chr11 17051184 17051481 -133732072 + AluJo SINE Alu 3 297 -15 841 232 21 14 chr11 17051482 17051762 -133731791 + L1M4c LINE L1 2017 2298 -4086 22 35 0 0 chr11 17052226 17052255 -133731298 + AT_rich Low_complexity Low_complexity 1 29 0 1986 179 81 0 chr11 17052853 17053027 -133730526 + MSTA LTR MaLR 1 160 -268 1928 159 0 0 chr11 17053027 17053322 -133730231 + AluSx SINE Alu 1 295 -17 1986 179 81 0 chr11 17053322 17053543 -133730010 + MSTA LTR MaLR 160 428 0 485 287 116 6 chr11 17054065 17054229 -133729324 - MIR SINE MIR -30 232 51 1838 306 64 40 chr11 17054234 17055035 -133728518 + L2 LINE L2 1912 2741 -573 1687 163 21 10 chr11 17055035 17055324 -133728229 + AluJb SINE Alu 1 292 -20 1838 306 64 40 chr11 17055324 17055491 -133728062 + L2 LINE L2 2741 2903 -411 5699 97 19 1 chr11 17055512 17055867 -133727686 - L1PB1 LINE L1 0 6151 5804 402 21 0 0 chr11 17055867 17055914 -133727639 + (CA)n Simple_repeat Simple_repeat 1 47 0 5699 97 19 1 chr11 17055914 17056369 -133727184 - L1PB1 LINE L1 -347 5804 5327 603 247 250 44 chr11 17056369 17056713 -133726840 + L2 LINE L2 2898 3312 -1 599 288 46 7 chr11 17056771 17056924 -133726629 - MIR3 SINE MIR -31 177 19 25 31 0 0 chr11 17057277 17057309 -133726244 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr11 17057895 17057918 -133725635 + AT_rich Low_complexity Low_complexity 1 23 0 2598 52 3 0 chr11 17058234 17058541 -133725012 - AluSc SINE Alu -1 308 1 1401 174 54 7 chr11 17058885 17059188 -133724365 + MER33 DNA MER1_type 1 302 -22 1856 162 0 13 chr11 17059743 17060045 -133723508 + AluSg SINE Alu 1 298 -12 720 188 0 15 chr11 17060056 17060189 -133723364 + FLAM_A SINE Alu 3 133 0 1728 216 173 17 chr11 17060316 17060858 -133722695 + L1ME3A LINE L1 5542 6168 -2 232 293 309 0 chr11 17061000 17061123 -133722430 - MIR3 SINE MIR -3 205 45 22 0 0 0 chr11 17062039 17062061 -133721492 + AT_rich Low_complexity Low_complexity 1 22 0 280 264 43 49 chr11 17062380 17062543 -133721010 + L1ME4a LINE L1 5942 6103 -18 788 142 0 57 chr11 17062641 17062782 -133720771 + AluJo SINE Alu 1 133 -169 331 170 44 111 chr11 17062857 17062992 -133720561 - LTR37A LTR ERV1 -2 424 299 1502 172 71 4 chr11 17063433 17063726 -133719827 + AluJo SINE Alu 1 311 0 936 45 0 0 chr11 17063791 17063902 -133719651 + L1P LINE L1 3770 3880 -2266 5237 19 0 0 chr11 17063902 17064498 -133719055 + L1PA3 LINE L1 5560 6155 0 2137 138 25 6 chr11 17064738 17065065 -133718488 + MER41-int LTR ERV1 1 333 -5613 3662 187 118 76 chr11 17065268 17066656 -133716897 - Looper DNA T2_type -64 1494 49 860 202 51 6 chr11 17066797 17066975 -133716578 + MER5A DNA MER1_type 1 186 -3 490 81 0 54 chr11 17067720 17067794 -133715759 + U3 snRNA snRNA 1 70 -147 2358 150 48 0 chr11 17067876 17068289 -133715264 - Tigger2a DNA MER2_type 0 434 2 353 344 122 43 chr11 17068525 17068804 -133714749 - L2 LINE L2 0 3272 2972 448 187 187 66 chr11 17068947 17069129 -133714424 + MER6B DNA MER2_type 4 207 -3 1467 105 76 0 chr11 17069319 17069529 -133714024 - AluSg1 SINE Alu -83 226 1 471 290 85 66 chr11 17070396 17070655 -133712898 + L2 LINE L2 3047 3310 -3 24 0 0 0 chr11 17070849 17070873 -133712680 + AT_rich Low_complexity Low_complexity 1 24 0 955 162 0 42 chr11 17070875 17071042 -133712511 + AluJo SINE Alu 137 296 -6 1697 153 24 30 chr11 17071056 17071351 -133712202 + AluSx SINE Alu 2 294 -18 13457 87 50 10 chr11 17072061 17073812 -133709741 + Charlie3 DNA MER1_type 1 1918 -788 1982 138 7 7 chr11 17073812 17074110 -133709443 + AluSx SINE Alu 1 298 -14 13457 87 50 10 chr11 17074110 17074933 -133708620 + Charlie3 DNA MER1_type 1918 2706 0 1702 124 95 4 chr11 17075689 17075963 -133707590 - AluSx SINE Alu -13 299 1 1882 129 20 7 chr11 17075963 17076257 -133707296 - AluSx SINE Alu -14 298 1 1363 139 180 4 chr11 17076343 17076588 -133706965 - AluJo SINE Alu -14 288 1 1176 160 0 11 chr11 17076925 17077106 -133706447 - AluJo SINE Alu -14 298 120 237 211 0 0 chr11 17077107 17077164 -133706389 + T-rich Low_complexity Low_complexity 1 57 0 765 156 0 57 chr11 17077164 17077305 -133706248 - FLAM_A SINE Alu 0 133 1 195 42 0 0 chr11 17077501 17077525 -133706028 + (ATG)n Simple_repeat Simple_repeat 2 25 0 13754 187 15 9 chr11 17078277 17083264 -133700289 + L1PB1 LINE L1 1789 6866 -1 227 97 0 0 chr11 17083311 17083342 -133700211 - U2 snRNA snRNA -153 35 5 223 195 0 69 chr11 17083362 17083449 -133700104 + (TATAA)n Simple_repeat Simple_repeat 1 81 0 1298 202 4 43 chr11 17083650 17083927 -133699626 - AluJb SINE Alu -18 294 29 693 214 0 0 chr11 17083956 17084073 -133699480 - AluJo SINE Alu -185 117 1 25 31 0 0 chr11 17084135 17084167 -133699386 + AT_rich Low_complexity Low_complexity 1 32 0 234 316 0 0 chr11 17084181 17084257 -133699296 - HAL1 LINE L1 -941 1566 1491 293 282 12 37 chr11 17085072 17085235 -133698318 - L1MEd LINE L1 -4905 1214 1056 1039 113 80 13 chr11 17085318 17085469 -133698084 + FRAM SINE Alu 1 161 -15 2197 108 3 0 chr11 17085571 17085859 -133697694 - AluSc SINE Alu -20 289 1 5252 137 42 41 chr11 17086280 17087348 -133696205 - L1MC2 LINE L1 -8 6336 5268 285 308 0 0 chr11 17087353 17087460 -133696093 - L1MB8 LINE L1 -281 5897 5791 760 259 40 39 chr11 17087546 17087911 -133695642 - L1MB8 LINE L1 -577 5589 5221 2516 51 0 0 chr11 17087911 17088205 -133695348 + AluY SINE Alu 1 294 -17 760 259 40 39 chr11 17088205 17088244 -133695309 - L1MB8 LINE L1 -945 5221 5184 2519 222 41 11 chr11 17088405 17089116 -133694437 - L1M4 LINE L1 -867 5348 4617 4371 262 71 12 chr11 17089119 17090076 -133693477 - L1MEc LINE L1 -2499 3716 2817 1856 163 36 11 chr11 17090076 17090432 -133693121 + MLT1A1 LTR MaLR 1 365 0 4371 262 71 12 chr11 17090432 17091030 -133692523 - L1MEc LINE L1 -3398 2817 2256 1508 210 0 7 chr11 17091030 17091306 -133692247 - AluJo SINE Alu -10 302 29 4371 262 71 12 chr11 17091306 17091952 -133691601 - L1MEc LINE L1 -3959 2256 1414 954 215 66 134 chr11 17091947 17092184 -133691369 + L1M4 LINE L1 3705 3957 -2189 * 1348 192 42 31 chr11 17092184 17092471 -133691082 - AluJo SINE Alu -18 294 5 954 215 66 134 chr11 17092471 17092808 -133690745 + L1M4 LINE L1 3957 4223 -1923 1723 181 27 0 chr11 17092808 17093100 -133690453 - AluJo SINE Alu -12 300 1 954 215 66 134 chr11 17093100 17093239 -133690314 + L1M4 LINE L1 4223 4370 -1776 21805 136 22 24 chr11 17093443 17093478 -133690075 + L1MB7 LINE L1 18 52 -7513 579 191 124 0 chr11 17093478 17093626 -133689927 + FLAM_C SINE Alu 1 161 0 21805 136 22 24 chr11 17093626 17096008 -133687545 + L1MB7 LINE L1 52 2437 -5128 1825 157 35 0 chr11 17096008 17096295 -133687258 + AluSx SINE Alu 1 297 -15 21805 136 22 24 chr11 17096295 17096441 -133687112 + L1MB7 LINE L1 2437 2582 -4983 1364 176 66 70 chr11 17096441 17096742 -133686811 + AluJb SINE Alu 3 302 -10 21805 136 22 24 chr11 17096742 17097461 -133686092 + L1MB7 LINE L1 2582 3301 -4264 180 111 0 0 chr11 17097461 17097488 -133686065 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 21805 136 22 24 chr11 17097488 17097582 -133685971 + L1MB7 LINE L1 3301 3394 -4171 1873 128 14 4 chr11 17097582 17097863 -133685690 + AluSx SINE Alu 7 290 -22 21805 136 22 24 chr11 17097863 17098818 -133684735 + L1MB7 LINE L1 3394 4348 -3217 421 164 0 0 chr11 17098818 17098891 -133684662 + L1PA12 LINE L1 159 231 -7350 8857 219 121 46 chr11 17098893 17101860 -133681693 + L1PA12 LINE L1 694 3436 -4148 2071 149 28 22 chr11 17101860 17102222 -133681331 - THE1B LTR MaLR 0 364 1 8857 219 121 46 chr11 17102222 17102477 -133681076 + L1PA12 LINE L1 3436 3670 -3914 615 148 0 0 chr11 17102477 17102578 -133680975 + AluSg/x SINE Alu 202 302 -8 8857 219 121 46 chr11 17102578 17103392 -133680161 + L1PA12 LINE L1 3670 4421 -3163 2572 56 0 3 chr11 17103392 17103694 -133679859 + AluY SINE Alu 1 301 -10 8857 219 121 46 chr11 17103694 17104070 -133679483 + L1PA12 LINE L1 4421 5614 -1970 509 147 0 0 chr11 17104070 17104145 -133679408 + AluS SINE Alu 1 75 -238 1995 139 0 20 chr11 17104153 17104455 -133679098 + AluSx SINE Alu 1 296 -16 305 159 148 0 chr11 17104457 17104545 -133679008 + L1MB7 LINE L1 5588 5688 -1877 590 198 19 116 chr11 17104646 17104904 -133678649 + MER41-int LTR ERV1 406 638 -5308 960 164 106 14 chr11 17104928 17105135 -133678418 + MSTA LTR MaLR 203 428 0 6112 100 3 21 chr11 17105146 17105670 -133677883 + L1PA14 LINE L1 4797 5329 -832 2088 138 7 0 chr11 17105670 17105960 -133677593 + AluSx SINE Alu 1 292 -20 6112 100 3 21 chr11 17105960 17106796 -133676757 + L1PA14 LINE L1 5329 6161 0 1769 120 101 0 chr11 17106827 17107103 -133676450 + AluSx SINE Alu 1 304 -8 317 154 393 26 chr11 17107552 17107669 -133675884 + MIR SINE MIR 2 161 -101 890 210 28 17 chr11 17107804 17107980 -133675573 + MER5A DNA MER1_type 12 189 0 3260 129 18 27 chr11 17108122 17108542 -133675011 + L1MB7 LINE L1 6866 7281 -322 1633 159 94 4 chr11 17108542 17108818 -133674735 + AluJb SINE Alu 1 301 -11 3260 129 18 27 chr11 17108818 17108995 -133674558 + L1MB7 LINE L1 7281 7458 -145 693 133 12 91 chr11 17109375 17109427 -133674126 + L1MB8 LINE L1 6022 6077 -101 2079 121 7 26 chr11 17109427 17109732 -133673821 + AluSx SINE Alu 1 299 -13 693 133 12 91 chr11 17109732 17109844 -133673709 + L1MB8 LINE L1 6077 6173 -5 309 230 9 35 chr11 17110134 17110247 -133673306 + L1ME4a LINE L1 5967 6076 -45 500 256 19 0 chr11 17110566 17110722 -133672831 - L1MC4a LINE L1 -1900 5908 5750 1769 167 3 29 chr11 17110730 17111036 -133672517 - AluSx SINE Alu -12 300 3 21437 108 15 12 chr11 17111282 17113330 -133670223 + L1P3 LINE L1 700 2780 -3681 182 61 0 30 chr11 17113330 17113363 -133670190 + (TA)n Simple_repeat Simple_repeat 2 33 0 21437 108 15 12 chr11 17113363 17115104 -133668449 + L1P3 LINE L1 2780 4515 -1946 180 0 0 0 chr11 17115216 17115236 -133668317 + (A)n Simple_repeat Simple_repeat 1 20 0 446 231 108 64 chr11 17116852 17117055 -133666498 + MIR SINE MIR 45 256 -6 1584 156 32 32 chr11 17117085 17117367 -133666186 - AluJb SINE Alu -30 282 1 213 295 89 58 chr11 17117557 17117747 -133665806 + L2 LINE L2 1789 1984 -1330 580 224 164 5 chr11 17117788 17117989 -133665564 + Charlie2 DNA MER1_type 91 323 -2539 612 166 166 36 chr11 17118009 17118232 -133665321 + Charlie2 DNA MER1_type 1893 2144 -718 2114 129 0 0 chr11 17118445 17118740 -133664813 - AluSq SINE Alu -18 295 1 625 153 65 40 chr11 17118949 17119073 -133664480 - L2 LINE L2 -14 3299 3173 392 143 84 0 chr11 17119077 17119231 -133664322 + (TA)n Simple_repeat Simple_repeat 2 168 0 908 103 0 8 chr11 17119243 17119360 -133664193 - AluSc SINE Alu -187 122 7 197 81 0 27 chr11 17119364 17119401 -133664152 + (TA)n Simple_repeat Simple_repeat 2 37 0 792 252 143 42 chr11 17119447 17119824 -133663729 - L2 LINE L2 -445 2869 2455 1029 165 0 13 chr11 17119824 17119982 -133663571 + FRAM SINE Alu 1 153 -23 1977 99 33 7 chr11 17119990 17120315 -133663238 + AluSc SINE Alu 1 332 0 1975 116 4 14 chr11 17121082 17121357 -133662196 + AluSp SINE Alu 1 272 -41 997 147 51 0 chr11 17121747 17121924 -133661629 + MER20 DNA MER1_type 33 218 -1 * 1595 224 102 12 chr11 17121924 17122323 -133661230 + Zaphod DNA AcHobo 9 443 -3588 689 197 34 0 chr11 17122408 17122525 -133661028 - FLAM_A SINE Alu -12 121 1 232 300 27 0 chr11 17122542 17122652 -133660901 + L1ME3A LINE L1 1570 1682 -4858 1736 156 10 14 chr11 17122661 17122950 -133660603 + AluJo SINE Alu 11 298 -14 1733 159 13 19 chr11 17123099 17123413 -133660140 - AluJb SINE Alu 0 312 1 264 229 0 57 chr11 17123506 17123611 -133659942 + L1M2 LINE L1 2429 2527 -4322 423 365 37 19 chr11 17123628 17123899 -133659654 + L1MEc LINE L1 156 431 -5965 948 181 0 6 chr11 17124264 17124430 -133659123 + FRAM SINE Alu 1 165 -1 1525 264 61 38 chr11 17124443 17125026 -133658527 + L1ME3A LINE L1 4875 5480 -1060 2221 123 7 0 chr11 17125026 17125327 -133658226 - AluSq SINE Alu -10 303 1 1525 264 61 38 chr11 17125327 17125478 -133658075 + L1ME3A LINE L1 5480 5626 -914 421 328 94 39 chr11 17125657 17125965 -133657588 + LTR16C LTR ERVL 156 480 -11 300 291 118 20 chr11 17125978 17126181 -133657372 + L1P5 LINE L1 5265 5487 -669 1340 236 92 69 chr11 17126196 17126718 -133656835 - MLT1F LTR MaLR -8 534 1 686 260 29 94 chr11 17126720 17127202 -133656351 + L1ME3A LINE L1 5907 6356 -208 243 301 44 9 chr11 17127350 17127463 -133656090 + L1ME3A LINE L1 6440 6556 -8 2428 92 0 7 chr11 17127471 17127777 -133655776 + AluSx SINE Alu 1 304 -8 394 264 136 7 chr11 17128827 17128967 -133654586 - MIR SINE MIR -10 252 95 375 196 9 89 chr11 17128968 17129080 -133654473 + MIR SINE MIR 160 262 0 578 271 32 7 chr11 17129292 17129447 -133654106 - L2 LINE L2 0 3313 3155 804 218 68 44 chr11 17129499 17129747 -133653806 - MIR SINE MIR -3 259 6 298 294 210 8 chr11 17130508 17130627 -133652926 + MIR SINE MIR 12 154 -108 318 293 45 45 chr11 17130659 17130816 -133652737 - MLT1J2 LTR MaLR -28 422 266 * 342 307 24 48 chr11 17130808 17130974 -133652579 - MLT1I LTR MaLR -169 240 79 278 26 26 0 chr11 17134719 17134758 -133648795 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 2385 88 3 3 chr11 17136297 17136593 -133646960 + AluSp SINE Alu 1 296 -17 563 309 100 5 chr11 17138160 17138380 -133645173 + MIR SINE MIR 12 252 -10 348 230 23 0 chr11 17138735 17138822 -133644731 + MIR SINE MIR 53 141 -67 252 177 0 0 chr11 17140368 17140430 -133643123 - MER4-int LTR ERV1 -5425 1173 1112 318 143 0 0 chr11 17140430 17140493 -133643060 + (CA)n Simple_repeat Simple_repeat 1 63 0 352 297 54 0 chr11 17142234 17142345 -133641208 - MIR SINE MIR -133 129 13 201 338 0 13 chr11 17142406 17142483 -133641070 + L2 LINE L2 2763 2838 -476 181 363 12 12 chr11 17142629 17142709 -133640844 + L2 LINE L2 3193 3272 0 411 192 0 50 chr11 17143096 17143195 -133640358 + L3b LINE CR1 1291 1384 -199 401 274 9 0 chr11 17143732 17143838 -133639715 - L2 LINE L2 -8 3264 3158 284 206 0 59 chr11 17144277 17144345 -133639208 - MIR SINE MIR -118 144 81 687 211 108 10 chr11 17148686 17148880 -133634673 + MIR SINE MIR 29 241 -21 470 262 21 114 chr11 17150690 17151076 -133632477 + L1ME3A LINE L1 5811 6160 -10 1083 147 0 0 chr11 17151086 17151243 -133632310 - FRAM SINE Alu -16 160 4 222 318 91 30 chr11 17151415 17151547 -133632006 - MIR3 SINE MIR -68 140 1 196 347 25 50 chr11 17152211 17152332 -133631221 + MIR SINE MIR 71 188 -74 457 234 0 0 chr11 17152530 17152624 -133630929 + MIR3 SINE MIR 101 194 -14 1172 180 19 45 chr11 17153586 17153818 -133629735 + L1MB2 LINE L1 5902 6128 -43 2046 141 10 0 chr11 17153818 17154117 -133629436 + AluSx SINE Alu 1 302 -10 1172 180 19 45 chr11 17154117 17154151 -133629402 + L1MB2 LINE L1 6128 6161 -10 2384 102 3 13 chr11 17154152 17154467 -133629086 - AluSq SINE Alu -1 312 1 1775 148 25 41 chr11 17154620 17154962 -133628591 + L1MB7 LINE L1 5793 6130 -54 1663 176 13 38 chr11 17154962 17155275 -133628278 - AluJo SINE Alu -7 305 1 1775 148 25 41 chr11 17155275 17155325 -133628228 + L1MB7 LINE L1 6130 6179 -5 27 29 0 0 chr11 17155345 17155379 -133628174 + AT_rich Low_complexity Low_complexity 1 34 0 221 269 0 0 chr11 17155737 17155789 -133627764 + L2 LINE L2 3220 3271 -1 862 319 57 19 chr11 17156836 17157306 -133626247 + L1MC4a LINE L1 5355 5842 -1966 703 189 31 6 chr11 17157306 17157465 -133626088 + MER3 DNA MER1_type 3 165 -44 209 274 20 0 chr11 17158402 17158453 -133625100 + L2 LINE L2 3213 3264 -8 358 288 39 33 chr11 17160254 17160407 -133623146 + MIR SINE MIR 43 196 -66 2342 112 0 0 chr11 17160855 17161151 -133622402 - AluSg SINE Alu -12 298 3 2438 104 0 0 chr11 17163818 17164126 -133619427 + AluSg SINE Alu 2 309 -1 299 326 29 40 chr11 17164283 17164458 -133619095 + L2 LINE L2 3100 3272 0 1056 156 0 6 chr11 17166075 17166254 -133617299 - MER5B DNA MER1_type 0 178 1 820 214 44 11 chr11 17166262 17166444 -133617109 - MER5A DNA MER1_type 0 189 2 414 282 46 75 chr11 17166456 17166630 -133616923 + MER5B DNA MER1_type 4 172 -6 364 279 125 7 chr11 17166644 17166780 -133616773 - MER5A DNA MER1_type 0 189 38 384 303 45 17 chr11 17167231 17167409 -133616144 + MIR SINE MIR 77 259 -3 398 285 199 0 chr11 17167986 17168137 -133615416 - L3 LINE CR1 -103 1474 1294 258 307 23 0 chr11 17168450 17168538 -133615015 + MLT1K LTR MaLR 499 588 0 362 309 117 9 chr11 17168599 17168829 -133614724 - L3 LINE CR1 -473 1104 850 329 294 124 20 chr11 17169170 17169323 -133614230 + MIR SINE MIR 67 235 -27 196 281 45 11 chr11 17172913 17173002 -133610551 + MIR SINE MIR 48 139 -69 1868 166 38 0 chr11 17173836 17174126 -133609427 - AluSx SINE Alu -11 301 1 421 195 38 0 chr11 17174315 17174407 -133609146 + MIR SINE MIR 70 167 -41 197 216 0 0 chr11 17174655 17174692 -133608861 + MIR SINE MIR 109 145 -63 671 216 70 38 chr11 17174829 17175014 -133608539 + MIR SINE MIR 72 262 0 236 221 169 0 chr11 17176334 17176411 -133607142 - MER96 DNA MER1_type? -32 143 54 587 260 35 1 chr11 17176457 17176625 -133606928 + MIR SINE MIR 16 192 -30 2248 103 0 0 chr11 17177107 17177418 -133606135 - AluY SINE Alu 0 311 1 2067 98 0 0 chr11 17177436 17177713 -133605840 - AluSx SINE Alu -35 277 1 203 289 19 19 chr11 17177803 17177855 -133605698 + MIR SINE MIR 20 71 -191 229 245 0 0 chr11 17177870 17177919 -133605634 - MIR SINE MIR -5 257 209 886 145 10 105 chr11 17177927 17177992 -133605561 + MER5A DNA MER1_type 9 79 -110 2169 121 57 25 chr11 17177992 17178396 -133605157 + L1MA7 LINE L1 5875 6291 0 886 145 10 105 chr11 17178396 17178530 -133605023 + MER5A DNA MER1_type 79 189 0 419 228 59 44 chr11 17178562 17178698 -133604855 + MIR SINE MIR 71 208 -54 225 94 0 0 chr11 17180819 17180851 -133602702 + (A)n Simple_repeat Simple_repeat 1 32 0 632 197 11 112 chr11 17181063 17181241 -133602312 + MER5B DNA MER1_type 5 164 -14 197 277 43 0 chr11 17181244 17181291 -133602262 - MER5B DNA MER1_type 0 178 130 1590 168 10 47 chr11 17181299 17181622 -133601931 - AluJo SINE Alu 0 312 1 417 225 0 22 chr11 17181623 17181712 -133601841 + MER5B DNA MER1_type 35 121 -57 223 287 178 0 chr11 17181748 17181877 -133601676 + L2 LINE L2 2168 2319 -995 373 189 176 40 chr11 17181969 17182117 -133601436 + L2 LINE L2 2285 2452 -862 3275 81 9 0 chr11 17182124 17182570 -133600983 + L1MA3 LINE L1 5696 6145 -160 598 174 68 61 chr11 17182570 17182702 -133600851 + AluJo SINE Alu 2 134 -178 901 115 29 9 chr11 17182702 17182851 -133600702 + L1MA3 LINE L1 6123 6279 -33 448 298 279 13 chr11 17182851 17183163 -133600390 + L2 LINE L2 2447 2841 -473 481 297 86 22 chr11 17184152 17184374 -133599179 + MIR SINE MIR 15 250 -12 585 320 71 62 chr11 17184927 17185333 -133598220 + L2 LINE L2 2863 3272 0 560 302 73 6 chr11 17185613 17185792 -133597761 - MIR SINE MIR -70 192 2 2723 110 3 0 chr11 17186452 17186826 -133596727 + THE1C LTR MaLR 1 375 0 638 244 114 51 chr11 17186977 17187326 -133596227 + MLT1K LTR MaLR 30 520 -68 1384 148 33 63 chr11 17187326 17187629 -133595924 - AluJo SINE Alu -16 296 3 638 244 114 51 chr11 17187629 17187701 -133595852 + MLT1K LTR MaLR 520 586 -2 1732 121 4 0 chr11 17187855 17188103 -133595450 + AluSx SINE Alu 46 294 -18 1557 194 0 16 chr11 17188291 17188600 -133594953 - AluJo SINE Alu -8 304 1 181 323 52 21 chr11 17189001 17189097 -133594456 - L2 LINE L2 -7 3306 3208 836 222 99 24 chr11 17189959 17190171 -133593382 + MIR SINE MIR 24 251 -11 795 297 88 22 chr11 17190190 17190634 -133592919 + MLT1J LTR MaLR 39 511 0 234 308 65 0 chr11 17192093 17192200 -133591353 - MIR SINE MIR -6 256 143 606 90 0 0 chr11 17192219 17192297 -133591256 + AluS SINE Alu 2 79 -234 2062 124 16 0 chr11 17192315 17192622 -133590931 - AluSx SINE Alu 0 312 1 1894 147 0 3 chr11 17193305 17193598 -133589955 + AluJb SINE Alu 1 292 -20 521 246 171 37 chr11 17193899 17194086 -133589467 - MIR SINE MIR -20 242 31 770 286 89 70 chr11 17194235 17194753 -133588800 + MLT1K LTR MaLR 61 588 0 2070 127 0 13 chr11 17195086 17195441 -133588112 - AluSx SINE Alu 0 312 1 439 288 14 7 chr11 17195666 17195805 -133587748 - MER117 DNA MER1_type -56 141 2 452 273 98 44 chr11 17196462 17196543 -133587010 + L1MC/D LINE L1 5297 5372 -2436 1475 189 0 23 chr11 17196543 17196849 -133586704 + AluJo SINE Alu 1 299 -13 452 273 98 44 chr11 17196849 17197006 -133586547 + L1MC/D LINE L1 5372 5558 -2250 2276 64 34 0 chr11 17197006 17197303 -133586250 - AluY SINE Alu -4 307 1 452 273 98 44 chr11 17197303 17197378 -133586175 + L1MC/D LINE L1 5558 5628 -2180 228 310 50 10 chr11 17197444 17197544 -133586009 + L1MC/D LINE L1 5768 5871 -1937 324 230 24 16 chr11 17197726 17197820 -133585733 + (TA)n Simple_repeat Simple_repeat 1 98 -29 1855 124 70 36 chr11 17197820 17198151 -133585402 - MER2 DNA MER2_type -1 343 2 324 230 24 16 chr11 17198151 17198182 -133585371 + (TA)n Simple_repeat Simple_repeat 98 127 0 285 290 270 28 chr11 17198254 17198506 -133585047 + L3 LINE CR1 344 656 -921 245 250 58 0 chr11 17198528 17198580 -133584973 - L2 LINE L2 0 3272 3218 2141 85 7 4 chr11 17198597 17198899 -133584654 + AluSq SINE Alu 1 303 0 1095 81 0 179 chr11 17200572 17200807 -133582746 + 7SK RNA RNA 1 193 0 180 0 0 0 chr11 17200913 17200933 -133582620 + (A)n Simple_repeat Simple_repeat 1 20 0 476 241 102 24 chr11 17201102 17201268 -133582285 - MIR SINE MIR -10 252 74 892 142 51 71 chr11 17201272 17201469 -133582084 + L2 LINE L2 3120 3312 -1 206 208 75 19 chr11 17201457 17201510 -133582043 - MIR SINE MIR -135 73 18 * 1840 146 11 0 chr11 17201976 17202282 -133581271 + AluSx SINE Alu 1 309 0 216 178 0 22 chr11 17203196 17203241 -133580312 - MIR SINE MIR 0 262 219 745 296 85 53 chr11 17203452 17203660 -133579893 - L2 LINE L2 -359 2955 2755 1776 154 4 0 chr11 17203660 17203985 -133579568 - AluJb SINE Alu 0 326 1 745 296 85 53 chr11 17203985 17204319 -133579234 - L2 LINE L2 -559 2755 2395 1977 140 0 0 chr11 17204321 17204629 -133578924 + AluSx SINE Alu 1 308 -4 192 77 0 0 chr11 17204637 17204663 -133578890 + (GAGAA)n Simple_repeat Simple_repeat 5 30 0 789 241 65 49 chr11 17204703 17204948 -133578605 + MIR SINE MIR 8 256 -6 474 286 100 79 chr11 17205244 17205403 -133578150 - L2 LINE L2 -159 3113 2944 2340 65 13 0 chr11 17205403 17205710 -133577843 - AluY SINE Alu 0 311 1 474 286 100 79 chr11 17205710 17205840 -133577713 - L2 LINE L2 -328 2944 2818 2121 105 0 38 chr11 17205870 17206184 -133577369 + AluSq SINE Alu 5 306 -7 222 292 0 0 chr11 17206317 17206365 -133577188 - MIR SINE MIR -3 259 212 222 398 39 19 chr11 17206546 17206649 -133576904 + L2 LINE L2 3153 3257 -15 1530 217 104 3 chr11 17206708 17207091 -133576462 - Charlie4a DNA MER1_type 0 508 87 279 213 70 98 chr11 17207956 17208109 -133575444 + MIR SINE MIR 42 184 -62 2197 110 3 0 chr11 17209758 17210067 -133573486 - AluSq SINE Alu -3 310 1 22 0 0 0 chr11 17210899 17210921 -133572632 + AT_rich Low_complexity Low_complexity 1 22 0 643 202 0 0 chr11 17211396 17211510 -133572043 + FLAM_C SINE Alu 15 128 -15 219 349 0 0 chr11 17211761 17211827 -133571726 + L2 LINE L2 2994 3059 -213 293 279 131 16 chr11 17212343 17212465 -133571088 + L2 LINE L2 3137 3272 0 312 322 56 56 chr11 17212596 17212810 -133570743 - L2 LINE L2 -788 2526 2313 297 282 47 57 chr11 17213894 17214049 -133569504 + MIR SINE MIR 40 190 -60 2062 106 0 0 chr11 17216017 17216337 -133567216 - AluSx SINE Alu 0 320 1 334 244 76 17 chr11 17216386 17216505 -133567048 - L1ME4a LINE L1 -29 6092 5967 2308 80 3 0 chr11 17216811 17217110 -133566443 - AluSq SINE Alu -13 300 1 476 337 57 29 chr11 17217579 17217929 -133565624 - MARNA DNA Mariner -179 407 48 319 330 26 0 chr11 17217827 17217942 -133565611 + MARNA DNA Mariner 437 554 -32 * 360 292 183 0 chr11 17218851 17218988 -133564565 - MIR SINE MIR -13 249 88 239 328 103 41 chr11 17219113 17219308 -133564245 + MIR SINE MIR 12 218 -44 613 213 47 8 chr11 17219562 17219689 -133563864 + AluSq/x SINE Alu 2 133 -179 1404 172 60 0 chr11 17219700 17219967 -133563586 + AluSx SINE Alu 1 283 -29 329 303 131 7 chr11 17222169 17222314 -133561239 + L3b LINE CR1 1113 1275 -308 1083 194 108 0 chr11 17222434 17222666 -133560887 + MIR SINE MIR 2 258 -4 23 0 0 0 chr11 17222692 17222715 -133560838 + AT_rich Low_complexity Low_complexity 1 23 0 2765 96 6 3 chr11 17222806 17223169 -133560384 + THE1B LTR MaLR 1 364 0 721 263 84 105 chr11 17223175 17223605 -133559948 - L3 LINE CR1 -188 1389 969 1483 154 103 4 chr11 17223761 17224033 -133559520 + AluSx SINE Alu 1 299 -13 534 250 210 55 chr11 17224124 17224157 -133559396 + MLT1I LTR MaLR 4 31 -378 1943 117 28 3 chr11 17224157 17224448 -133559105 - AluSg SINE Alu -12 298 1 534 250 210 55 chr11 17224448 17224629 -133558924 + MLT1I LTR MaLR 31 183 -226 2353 81 0 0 chr11 17224629 17224925 -133558628 + AluSq SINE Alu 1 296 -17 534 250 210 55 chr11 17224925 17225057 -133558496 + MLT1I LTR MaLR 183 405 -4 1097 156 56 0 chr11 17225492 17225671 -133557882 - MER5A DNA MER1_type 0 189 1 267 299 98 24 chr11 17226163 17226327 -133557226 + L2 LINE L2 2395 2570 -744 227 162 0 0 chr11 17226547 17226584 -133556969 + MLT1I LTR MaLR 370 406 -3 363 357 8 0 chr11 17226803 17226929 -133556624 + L2 LINE L2 3184 3310 -3 463 273 169 6 chr11 17227675 17227847 -133555706 + MIR SINE MIR 23 222 -40 599 182 73 21 chr11 17227927 17228119 -133555434 + L1MC5 LINE L1 7729 7930 -31 510 202 9 26 chr11 17228644 17228666 -133554887 - FLAM_A SINE Alu -188 123 102 1936 127 0 41 chr11 17228666 17228981 -133554572 + AluJb SINE Alu 1 302 -10 510 202 9 26 chr11 17228981 17229072 -133554481 - FLAM_A SINE Alu -209 102 12 1958 114 28 0 chr11 17230292 17230582 -133552971 - AluSx SINE Alu -10 302 5 1408 165 19 4 chr11 17230852 17231112 -133552441 - AluJo SINE Alu -23 289 26 389 248 114 9 chr11 17231148 17231253 -133552300 - L2 LINE L2 -7 3306 3191 277 302 31 39 chr11 17231319 17231448 -133552105 - L1ME LINE L1 -426 5695 5568 2182 110 0 0 chr11 17231988 17232287 -133551266 - AluSx SINE Alu -13 299 1 1850 161 3 0 chr11 17232548 17232846 -133550707 + AluJb SINE Alu 4 302 -10 301 211 0 74 chr11 17233547 17233642 -133549911 - MIR SINE MIR -57 205 118 1784 160 13 3 chr11 17233759 17234065 -133549488 - AluJb SINE Alu -3 309 1 510 281 31 12 chr11 17236114 17236274 -133547279 + MIR SINE MIR 94 256 -6 1419 291 86 27 chr11 17236301 17236926 -133546627 + L2 LINE L2 2316 2977 -337 965 153 0 6 chr11 17236932 17237089 -133546464 - AluSg/x SINE Alu -27 285 130 433 185 22 33 chr11 17238440 17238532 -133545021 + MIR SINE MIR 58 148 -60 389 259 118 22 chr11 17238592 17238727 -133544826 + MIR SINE MIR 36 183 -79 355 250 0 43 chr11 17239150 17239242 -133544311 + MIR3 SINE MIR 121 208 0 522 186 97 0 chr11 17240388 17240501 -133543052 + L2 LINE L2 3189 3312 -1 583 196 7 26 chr11 17240648 17240791 -133542762 + MER69 DNA AcHobo 9 2488 -38 237 108 0 0 chr11 17241173 17241210 -133542343 + (CA)n Simple_repeat Simple_repeat 2 38 0 549 311 51 6 chr11 17241253 17241430 -133542123 - MIR SINE MIR -55 207 23 341 265 97 107 chr11 17242235 17242431 -133541122 - L1MC4a LINE L1 -1786 6022 5829 2184 121 0 6 chr11 17242672 17242986 -133540567 + AluSx SINE Alu 1 312 0 1868 136 39 0 chr11 17243381 17243667 -133539886 + AluSx SINE Alu 2 298 -14 1226 128 5 25 chr11 17243699 17243895 -133539658 + AluSq SINE Alu 2 193 -120 2079 105 3 19 chr11 17244033 17244347 -133539206 + AluSx SINE Alu 1 309 -3 2321 87 0 0 chr11 17244751 17245051 -133538502 + AluSx SINE Alu 2 301 -11 227 122 73 0 chr11 17245132 17245173 -133538380 - L2 LINE L2 -1 3312 3269 649 177 103 6 chr11 17245369 17245544 -133538009 + L1M2 LINE L1 1812 2003 -4846 486 151 0 0 chr11 17245544 17245617 -133537936 + AluJo SINE Alu 59 131 -181 302 61 20 0 chr11 17245623 17245672 -133537881 + (TCTCCC)n Simple_repeat Simple_repeat 1 50 0 9680 57 3 86 chr11 17245677 17247186 -133536367 + SVA Other Other 2 1386 0 237 71 18 179 chr11 17247239 17247295 -133536258 + FRAM SINE Alu 1 12 -153 1334 194 46 93 chr11 17247297 17247729 -133535824 + LTR7 LTR ERV1 1 412 -38 252 0 0 0 chr11 17247739 17247767 -133535786 + (TA)n Simple_repeat Simple_repeat 2 29 0 818 222 0 12 chr11 17247776 17247943 -133535610 + FRAM SINE Alu 1 165 -1 3429 243 20 9 chr11 17247943 17248895 -133534658 + L1PA15-16 LINE L1 2149 3113 -3736 336 350 26 0 chr11 17248919 17249036 -133534517 - MIR3 SINE MIR -4 204 85 1509 162 35 17 chr11 17249213 17249391 -133534162 - AluJo SINE Alu -7 305 119 207 0 0 0 chr11 17249391 17249414 -133534139 + (CTATT)n Simple_repeat Simple_repeat 5 27 0 1509 162 35 17 chr11 17249414 17249525 -133534028 - AluJo SINE Alu -193 119 11 948 223 134 8 chr11 17249632 17249870 -133533683 + MLT1C LTR MaLR 200 467 0 994 325 88 35 chr11 17249885 17250518 -133533035 + L3 LINE CR1 910 1576 -1 234 0 0 0 chr11 17250727 17250753 -133532800 + (TG)n Simple_repeat Simple_repeat 1 26 0 1419 173 0 82 chr11 17250753 17251091 -133532462 - AluJb SINE Alu 0 313 1 1146 198 25 0 chr11 17251148 17251350 -133532203 - MLT1A1 LTR MaLR -52 313 107 324 231 167 9 chr11 17251431 17251539 -133532014 - MIR SINE MIR -56 206 82 342 272 0 22 chr11 17251689 17251781 -133531772 + MIR3 SINE MIR 104 193 -15 195 314 114 0 chr11 17252864 17252934 -133530619 + MIR SINE MIR 16 93 -115 811 237 45 0 chr11 17253212 17253389 -133530164 - MIR SINE MIR -47 215 31 438 330 20 15 chr11 17254407 17254604 -133528949 + L2 LINE L2 2221 2418 -896 186 312 159 60 chr11 17254756 17255070 -133528483 + L2 LINE L2 2443 2787 -527 253 296 153 35 chr11 17255413 17255584 -133527969 - MIR SINE MIR -70 192 4 514 301 109 5 chr11 17256736 17256929 -133526624 + MIR SINE MIR 35 247 -15 306 294 22 38 chr11 17257026 17257210 -133526343 + L2 LINE L2 2563 2743 -571 499 269 114 5 chr11 17257221 17257440 -133526113 + L1M4 LINE L1 4442 4684 -1462 2243 65 3 7 chr11 17257535 17257828 -133525725 + AluSp SINE Alu 1 292 -21 409 320 76 15 chr11 17257982 17258179 -133525374 - MIR SINE MIR -2 260 52 2216 86 10 7 chr11 17259164 17259467 -133524086 - AluSx SINE Alu -8 304 1 4061 172 35 28 chr11 17259849 17259907 -133523646 - L1MB7 LINE L1 -10 6174 6118 1659 169 7 7 chr11 17259907 17260208 -133523345 + AluJo SINE Alu 1 301 -11 4061 172 35 28 chr11 17260208 17260967 -133522586 - L1MB7 LINE L1 -66 6118 5351 662 272 108 19 chr11 17260995 17261208 -133522345 + MIR SINE MIR 31 262 0 188 284 0 45 chr11 17261548 17261615 -133521938 + L2 LINE L2 3187 3250 -22 278 246 167 37 chr11 17262654 17262869 -133520684 + L1ME4a LINE L1 5692 5934 -187 1704 167 3 11 chr11 17263291 17263578 -133519975 + AluJb SINE Alu 1 285 -27 33 0 0 0 chr11 17263578 17263611 -133519942 + AT_rich Low_complexity Low_complexity 1 33 0 238 269 0 30 chr11 17264178 17264245 -133519308 - MIR SINE MIR -112 150 86 656 162 17 8 chr11 17264424 17264541 -133519012 + MLT1B LTR MaLR 1 118 -272 654 37 0 0 chr11 17264541 17264622 -133518931 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 5668 75 21 25 chr11 17264654 17265524 -133518029 + SVA Other Other 1 866 -520 6534 57 11 64 chr11 17265541 17266548 -133517005 + SVA Other Other 433 1386 0 1378 180 50 32 chr11 17266563 17266765 -133516788 + MLT1B LTR MaLR 108 318 -72 2241 102 0 0 chr11 17266765 17267069 -133516484 - AluSx SINE Alu -8 304 1 1378 180 50 32 chr11 17267069 17267144 -133516409 + MLT1B LTR MaLR 318 390 0 456 224 218 42 chr11 17267270 17267435 -133516118 + MIR SINE MIR 50 243 -19 249 242 169 8 chr11 17267844 17267968 -133515585 + MIR3 SINE MIR 22 165 -43 331 263 127 52 chr11 17268421 17268634 -133514919 - MIR SINE MIR -14 248 20 1165 144 39 0 chr11 17268860 17269040 -133514513 + MER20 DNA MER1_type 4 190 -29 310 205 86 51 chr11 17269139 17269256 -133514297 + MIR SINE MIR 30 147 -61 215 345 36 0 chr11 17269273 17269357 -133514196 - MER5A DNA MER1_type -1 188 102 603 224 60 8 chr11 17270446 17270580 -133512973 + MER5B DNA MER1_type 38 178 0 380 266 42 42 chr11 17271816 17271959 -133511594 + L3b LINE CR1 1281 1423 -160 430 274 40 23 chr11 17272238 17272413 -133511140 + L1ME4a LINE L1 5710 5887 -234 289 266 154 14 chr11 17272430 17272573 -133510980 + L1ME4a LINE L1 5955 6117 -4 377 276 12 26 chr11 17273037 17273183 -133510370 - MIR SINE MIR -62 146 12 306 190 174 58 chr11 17273479 17273600 -133509953 - MIR SINE MIR -81 181 47 7901 15 21 0 chr11 17273639 17274624 -133508929 - L1PA3 LINE L1 -4 6151 5162 615 313 61 0 chr11 17274659 17274857 -133508696 + MIR SINE MIR 21 230 -32 2005 135 0 0 chr11 17275210 17275513 -133508040 + AluSx SINE Alu 1 303 -9 279 260 82 0 chr11 17275530 17275603 -133507950 + L2 LINE L2 3180 3258 -55 2389 171 100 7 chr11 17275605 17276067 -133507486 - MLT1D LTR MaLR 0 505 1 196 296 0 0 chr11 17276067 17276111 -133507442 + L2 LINE L2 3215 3258 -14 227 283 47 47 chr11 17276711 17276817 -133506736 + MIR SINE MIR 39 144 -118 2119 114 0 10 chr11 17277202 17277510 -133506043 + AluSq SINE Alu 1 305 -8 388 293 56 50 chr11 17277553 17277670 -133505883 + MIR3 SINE MIR 30 149 -59 1395 181 43 26 chr11 17277670 17277974 -133505579 + AluJo SINE Alu 3 311 -1 388 293 56 50 chr11 17277974 17278019 -133505534 + MIR3 SINE MIR 149 192 -16 443 251 193 11 chr11 17278256 17278443 -133505110 + MIR SINE MIR 42 262 0 346 288 88 24 chr11 17278439 17278564 -133504989 + L2 LINE L2 3104 3236 -36 * 197 232 87 58 chr11 17278910 17278979 -133504574 + MIR SINE MIR 38 108 -100 312 314 124 0 chr11 17280065 17280186 -133503367 - MIR SINE MIR -60 202 67 464 267 144 44 chr11 17280561 17280741 -133502812 - MIR SINE MIR -34 228 31 266 332 21 75 chr11 17284748 17284935 -133498618 - L2 LINE L2 -84 3188 3012 251 352 19 9 chr11 17285176 17285284 -133498269 + MIR SINE MIR 17 125 -83 754 178 51 81 chr11 17285284 17285481 -133498072 + AluJo SINE Alu 112 302 -10 886 243 49 8 chr11 17285956 17286219 -133497334 + L1ME4a LINE L1 5571 5844 -277 882 181 0 12 chr11 17286451 17286611 -133496942 + FRAM SINE Alu 8 165 -11 1636 151 26 26 chr11 17286726 17287037 -133496516 - AluJb SINE Alu -1 311 1 198 0 0 0 chr11 17287186 17287208 -133496345 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 372 226 135 15 chr11 17287213 17287346 -133496207 + L1ME4a LINE L1 5973 6121 0 2389 72 0 3 chr11 17288005 17288312 -133495241 + AluSc SINE Alu 1 306 -3 955 184 0 0 chr11 17288580 17288754 -133494799 + FRAM SINE Alu 1 172 -4 21 0 0 0 chr11 17289100 17289121 -133494432 + AT_rich Low_complexity Low_complexity 1 21 0 409 324 64 6 chr11 17289448 17289621 -133493932 - MER5A DNA MER1_type 0 189 7 1548 156 42 39 chr11 17289723 17289851 -133493702 + AluSx SINE Alu 1 127 -185 252 22 43 22 chr11 17289851 17289897 -133493656 + (CAAAA)n Simple_repeat Simple_repeat 5 51 0 1548 156 42 39 chr11 17289897 17290075 -133493478 + AluSx SINE Alu 127 308 -4 522 272 103 5 chr11 17290356 17290551 -133493002 + MIR SINE MIR 49 262 0 1753 162 0 23 chr11 17290560 17290863 -133492690 - AluJo SINE Alu -12 300 5 489 293 273 5 chr11 17290869 17291384 -133492169 - L2 LINE L2 -6 3307 2648 864 248 62 9 chr11 17291384 17291610 -133491943 - MIR SINE MIR -1 261 24 913 310 47 45 chr11 17291618 17292044 -133491509 - L2 LINE L2 -648 2666 2240 1897 108 47 0 chr11 17293435 17293712 -133489841 + AluSx SINE Alu 1 290 -22 2206 100 0 6 chr11 17294403 17294714 -133488839 + AluSg SINE Alu 2 310 0 236 217 0 33 chr11 17295236 17295296 -133488257 + MIR SINE MIR 78 135 -73 420 268 131 44 chr11 17295539 17295722 -133487831 - L2 LINE L2 0 3313 3115 2196 103 3 0 chr11 17295892 17296193 -133487360 - AluSp SINE Alu -9 304 3 1793 167 0 10 chr11 17297417 17297728 -133485825 + AluSx SINE Alu 1 308 -4 462 317 8 0 chr11 17298387 17298510 -133485043 + L2 LINE L2 3129 3252 -20 2143 98 7 10 chr11 17298569 17298874 -133484679 - AluSx SINE Alu -8 304 1 287 261 235 39 chr11 17299513 17299666 -133483887 - L3 LINE CR1 -10 1567 1385 709 247 18 58 chr11 17299829 17300052 -133483501 - MIR SINE MIR 0 262 49 313 202 179 0 chr11 17300216 17300300 -133483253 + L2 LINE L2 3215 3313 0 721 269 148 9 chr11 17300300 17300516 -133483037 - MIR SINE MIR -8 254 9 1327 182 77 7 chr11 17301392 17301693 -133481860 - MER33 DNA MER1_type -15 309 1 319 232 61 127 chr11 17302146 17302327 -133481226 - MER5A DNA MER1_type -4 185 17 2179 100 0 0 chr11 17302358 17302649 -133480904 + AluSq SINE Alu 1 291 -22 1155 117 0 0 chr11 17302651 17302813 -133480740 + AluSg/x SINE Alu 134 295 -15 21 0 0 0 chr11 17302828 17302849 -133480704 + AT_rich Low_complexity Low_complexity 1 21 0 331 248 72 59 chr11 17303090 17303243 -133480310 - MIR SINE MIR -2 260 106 1765 134 4 0 chr11 17303260 17303522 -133480031 - AluSx SINE Alu -49 263 1 197 283 94 0 chr11 17303720 17303773 -133479780 + L2 LINE L2 3117 3174 -98 183 156 0 0 chr11 17303812 17303844 -133479709 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 242 275 0 14 chr11 17305277 17305346 -133478207 + MER5A DNA MER1_type 18 85 -104 1144 90 28 11 chr11 17305418 17305595 -133477958 + L1MA8 LINE L1 5430 5609 -682 2125 125 0 0 chr11 17305595 17305906 -133477647 + AluSx SINE Alu 1 311 -1 2143 109 10 10 chr11 17305920 17306232 -133477321 + AluSx SINE Alu 1 312 0 2318 168 67 6 chr11 17306238 17306713 -133476840 + L1MA8 LINE L1 5769 6272 -19 278 299 13 0 chr11 17306846 17306923 -133476630 + (CA)n Simple_repeat Simple_repeat 1 78 0 237 33 0 0 chr11 17306936 17306966 -133476587 + (CA)n Simple_repeat Simple_repeat 2 31 0 422 265 63 63 chr11 17307666 17307855 -133475698 - MER5A DNA MER1_type 0 189 1 196 299 143 41 chr11 17307898 17308045 -133475508 - L2 LINE L2 0 3313 3152 588 267 128 0 chr11 17309328 17309523 -133474030 - MIR SINE MIR -2 260 41 210 71 0 0 chr11 17309636 17309664 -133473889 + (ATG)n Simple_repeat Simple_repeat 3 30 0 223 351 13 0 chr11 17309811 17309888 -133473665 - MIR SINE MIR -171 91 14 973 246 124 75 chr11 17310368 17310836 -133472717 + MLT1J LTR MaLR 21 511 0 1075 199 77 9 chr11 17310895 17311116 -133472437 - MER46A DNA MER2_type 0 236 1 23 0 0 0 chr11 17311202 17311225 -133472328 + AT_rich Low_complexity Low_complexity 1 23 0 283 296 7 59 chr11 17311355 17311490 -133472063 - L2 LINE L2 -213 3059 2932 22 56 0 0 chr11 17311933 17311969 -133471584 + AT_rich Low_complexity Low_complexity 1 36 0 1654 186 20 0 chr11 17312520 17312637 -133470916 + AluJo SINE Alu 1 114 -198 192 40 0 0 chr11 17312637 17312662 -133470891 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1654 186 20 0 chr11 17312662 17312840 -133470713 + AluJo SINE Alu 114 302 -10 2355 70 0 3 chr11 17312977 17313276 -133470277 - AluSg SINE Alu -12 298 1 476 331 69 60 chr11 17313520 17313837 -133469716 + L2 LINE L2 2953 3272 0 563 168 97 0 chr11 17314195 17314308 -133469245 + FLAM_A SINE Alu 13 136 -6 730 212 0 0 chr11 17314472 17314604 -133468949 - FLAM_A SINE Alu -1 132 1 206 333 39 29 chr11 17314719 17314821 -133468732 - MIR SINE MIR -90 118 16 1213 286 47 15 chr11 17315486 17315974 -133467579 + L1MB5 LINE L1 5660 6166 -8 2208 113 0 3 chr11 17315978 17316289 -133467264 - AluSg SINE Alu 0 310 1 1816 175 0 3 chr11 17316320 17316629 -133466924 + AluJb SINE Alu 1 308 -4 426 239 77 65 chr11 17316682 17316929 -133466624 + L1ME4a LINE L1 5872 6121 0 271 281 24 0 chr11 17317003 17317085 -133466468 + L1ME4a LINE L1 5969 6052 -69 1485 95 59 0 chr11 17317367 17317588 -133465965 - L1PA14 LINE L1 0 6161 5928 686 287 79 5 chr11 17320028 17320244 -133463309 + MIR SINE MIR 20 251 -11 543 242 115 45 chr11 17320424 17320673 -133462880 + MIR SINE MIR 2 261 -1 1875 150 7 0 chr11 17320761 17321047 -133462506 - AluSx SINE Alu -24 288 1 180 245 41 0 chr11 17321304 17321353 -133462200 + MIR SINE MIR 99 149 -59 3183 175 30 17 chr11 17322164 17322764 -133460789 - L1MB4 LINE L1 -80 6100 5493 322 273 20 0 chr11 17323072 17323171 -133460382 + Charlie7 DNA MER1_type 1 101 -2511 303 241 241 8 chr11 17323163 17323296 -133460257 + Charlie7 DNA MER1_type 2434 2597 -15 * 1836 136 7 45 chr11 17323313 17323622 -133459931 + AluSx SINE Alu 1 297 -15 464 313 51 42 chr11 17323940 17324157 -133459396 + MIR SINE MIR 13 231 -31 2154 106 0 0 chr11 17324187 17324480 -133459073 + AluSx SINE Alu 1 293 -19 360 64 0 0 chr11 17324567 17324614 -133458939 + (TG)n Simple_repeat Simple_repeat 2 48 0 194 296 209 9 chr11 17327199 17327314 -133456239 - L3b LINE CR1 -195 1388 1251 447 318 201 7 chr11 17327503 17327811 -133455742 + L3 LINE CR1 709 1076 -501 572 269 20 45 chr11 17328002 17328203 -133455350 + MLT1K LTR MaLR 393 588 0 378 294 160 9 chr11 17328204 17328435 -133455118 + L3 LINE CR1 1094 1359 -218 282 283 30 60 chr11 17328497 17328663 -133454890 + MIR SINE MIR 40 200 -62 2038 145 0 25 chr11 17328663 17328980 -133454573 + AluJb SINE Alu 1 309 -3 239 242 176 13 chr11 17329094 17329247 -133454306 + L1ME4a LINE L1 5941 6118 -3 311 305 30 0 chr11 17329574 17329705 -133453848 - L1ME4a LINE L1 -223 5898 5764 29 70 0 0 chr11 17330001 17330058 -133453495 + AT_rich Low_complexity Low_complexity 1 57 0 2083 154 3 0 chr11 17330109 17330408 -133453145 - AluSx SINE Alu -11 301 2 2033 138 3 10 chr11 17330411 17330708 -133452845 - AluJb SINE Alu -17 295 1 1711 161 20 37 chr11 17330709 17331007 -133452546 - AluJo SINE Alu -19 293 1 531 150 71 18 chr11 17331832 17331945 -133451608 - MER5B DNA MER1_type -3 175 57 906 180 0 30 chr11 17332401 17332568 -133450985 + AluJb SINE Alu 136 297 -15 544 16 0 0 chr11 17332707 17332769 -133450784 - U6 snRNA snRNA -1 106 45 748 233 17 47 chr11 17332773 17333035 -133450518 - L1MD2 LINE L1 -51 6115 6020 505 162 0 27 chr11 17333046 17333157 -133450396 - L1MD2 LINE L1 -268 5974 5867 250 253 46 35 chr11 17333236 17333323 -133450230 + L1ME4a LINE L1 5762 5849 -272 456 195 0 0 chr11 17333401 17333478 -133450075 - MER2 DNA MER2_type -262 83 7 568 196 211 0 chr11 17333485 17333684 -133449869 + L1ME4a LINE L1 5864 6104 -17 197 324 49 20 chr11 17334390 17334492 -133449061 + MIR3 SINE MIR 81 185 -23 293 226 140 21 chr11 17334668 17334761 -133448792 + L2 LINE L2 3210 3313 0 197 358 25 0 chr11 17335403 17335484 -133448069 + L2 LINE L2 3171 3253 -19 509 261 42 21 chr11 17335645 17335787 -133447766 + MIR SINE MIR 54 198 -64 489 263 16 41 chr11 17336439 17336633 -133446920 - L1ME LINE L1 -312 5809 5621 2094 96 30 0 chr11 17336889 17337189 -133446364 - AluSg SINE Alu 0 308 1 368 237 140 0 chr11 17337292 17337385 -133446168 - MIR SINE MIR -63 145 40 295 215 132 0 chr11 17338071 17338241 -133445312 - MIR SINE MIR 0 262 31 1619 95 137 0 chr11 17338506 17338768 -133444785 + AluSq SINE Alu 1 298 -5 761 245 139 14 chr11 17339085 17339293 -133444260 - MIR SINE MIR -15 247 14 288 0 0 0 chr11 17340646 17340678 -133442875 + (CA)n Simple_repeat Simple_repeat 2 33 0 303 71 0 0 chr11 17340679 17340721 -133442832 + (GA)n Simple_repeat Simple_repeat 1 42 0 223 342 35 0 chr11 17340790 17340904 -133442649 + L2 LINE L2 2943 3060 -212 499 316 46 15 chr11 17341036 17341232 -133442321 + L3 LINE CR1 1316 1517 -60 1071 153 148 10 chr11 17341751 17341947 -133441606 + AluJo SINE Alu 85 307 -5 183 313 0 0 chr11 17341976 17342024 -133441529 - L2 LINE L2 -12 3260 3213 190 179 26 0 chr11 17342075 17342114 -133441439 - L2 LINE L2 -577 2737 2698 24 96 0 0 chr11 17342138 17342211 -133441342 + AT_rich Low_complexity Low_complexity 1 73 0 1068 220 183 42 chr11 17342216 17342713 -133440840 + L2 LINE L2 2698 3313 0 524 298 0 0 chr11 17342714 17342845 -133440708 - MIR SINE MIR -86 176 46 241 300 71 57 chr11 17342955 17343095 -133440458 + L2 LINE L2 3126 3267 -5 227 143 0 0 chr11 17343211 17343246 -133440307 + U2 snRNA snRNA 2 36 -152 274 268 98 9 chr11 17343669 17343781 -133439772 + L2 LINE L2 3191 3312 -1 412 224 40 40 chr11 17344493 17344618 -133438935 + MIR SINE MIR 16 140 -68 228 246 53 0 chr11 17345422 17345479 -133438074 + MIR SINE MIR 93 152 -56 197 284 55 55 chr11 17345512 17345639 -133437914 + L2 LINE L2 2933 3059 -213 351 235 20 59 chr11 17345988 17346090 -133437463 - MIR SINE MIR -145 117 20 267 79 0 0 chr11 17346271 17346309 -133437244 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 2316 117 7 3 chr11 17346309 17346617 -133436936 - AluSq SINE Alu -4 309 1 886 269 203 7 chr11 17346617 17347026 -133436527 - L3 LINE CR1 -108 1469 981 589 313 24 29 chr11 17347119 17347327 -133436226 + MIR SINE MIR 13 219 -43 205 224 45 75 chr11 17347325 17347392 -133436161 - MIR SINE MIR -152 110 46 * 328 233 150 33 chr11 17347490 17347610 -133435943 + L2 LINE L2 3137 3270 -2 207 88 0 0 chr11 17348039 17348073 -133435480 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 626 81 0 0 chr11 17348081 17348168 -133435385 + AluY SINE Alu 218 304 -7 1155 259 138 10 chr11 17349129 17349844 -133433709 - L2 LINE L2 -4 3309 2508 307 240 178 16 chr11 17350211 17350340 -133433213 + MIR SINE MIR 49 198 -64 2276 118 0 3 chr11 17350342 17350646 -133432907 + AluSx SINE Alu 1 303 -9 373 219 89 57 chr11 17350686 17350809 -133432744 + MIR SINE MIR 98 224 -38 373 172 232 0 chr11 17352810 17352909 -133430644 - L2 LINE L2 -19 3294 3173 * 655 246 134 22 chr11 17352905 17353137 -133430416 - MIR SINE MIR -3 259 2 305 258 0 0 chr11 17353178 17353244 -133430309 + L2 LINE L2 3202 3267 -5 352 284 52 9 chr11 17353965 17354081 -133429472 - MIR SINE MIR -10 252 132 2584 54 0 0 chr11 17354524 17354818 -133428735 + AluY SINE Alu 1 294 -17 722 197 81 73 chr11 17355810 17356057 -133427496 + MIR SINE MIR 12 255 -7 262 354 63 8 chr11 17357560 17357687 -133425866 - MIR SINE MIR -19 243 110 277 247 34 22 chr11 17357687 17357776 -133425777 - MER5A DNA MER1_type -3 186 97 2063 125 0 34 chr11 17357958 17358255 -133425298 - AluSx SINE Alu -13 299 13 548 191 88 41 chr11 17358582 17358729 -133424824 - MIR SINE MIR -99 163 10 230 345 109 0 chr11 17359055 17359174 -133424379 + L2 LINE L2 3141 3272 0 225 320 0 41 chr11 17359177 17359274 -133424279 - L3 LINE CR1 -89 1488 1396 960 209 0 11 chr11 17360128 17360305 -133423248 + FRAM SINE Alu 1 172 -4 292 303 26 92 chr11 17360350 17360502 -133423051 + MIR SINE MIR 24 165 -97 335 264 166 18 chr11 17360692 17360855 -133422698 - L1MC4 LINE L1 -66 7976 7790 2381 99 7 0 chr11 17360863 17361165 -133422388 - AluSp SINE Alu -9 304 1 613 200 132 77 chr11 17361351 17361571 -133421982 - MIR SINE MIR -11 251 20 2308 137 0 0 chr11 17362255 17362568 -133420985 - AluSq SINE Alu 0 313 1 202 344 0 0 chr11 17362571 17362632 -133420921 + MIR SINE MIR 83 143 -65 2259 113 0 7 chr11 17363123 17363423 -133420130 + AluSx SINE Alu 1 298 -14 1645 110 169 0 chr11 17363964 17364219 -133419334 + AluSq SINE Alu 1 298 -15 2234 117 3 0 chr11 17364222 17364521 -133419032 + AluSx SINE Alu 3 302 -10 470 186 41 21 chr11 17365060 17365205 -133418348 + MER45B DNA AcHobo 744 891 -149 1198 110 0 0 chr11 17365205 17365359 -133418194 - AluSp SINE Alu -20 293 140 608 184 25 108 chr11 17365386 17365450 -133418103 + MER45B DNA AcHobo 896 964 -617 1983 167 0 3 chr11 17365450 17365749 -133417804 - AluJb SINE Alu -14 298 1 608 184 25 108 chr11 17365749 17365761 -133417792 + MER45B DNA AcHobo 964 975 -606 511 92 0 0 chr11 17365761 17365837 -133417716 - MADE1 DNA Mariner -4 76 1 608 184 25 108 chr11 17365837 17365917 -133417636 + MER45B DNA AcHobo 975 1040 0 335 284 146 5 chr11 17367048 17367202 -133416351 + MIR SINE MIR 34 200 -62 294 315 85 8 chr11 17367247 17367377 -133416176 + MIR SINE MIR 122 261 -1 225 290 0 0 chr11 17367377 17367439 -133416114 + (TTA)n Simple_repeat Simple_repeat 3 64 0 1537 205 29 0 chr11 17367500 17367806 -133415747 - AluJo SINE Alu 0 314 1 2230 122 6 10 chr11 17367984 17368295 -133415258 + AluSx SINE Alu 1 310 -2 953 191 0 0 chr11 17368344 17368496 -133415057 + FRAM SINE Alu 1 152 -24 1785 291 207 16 chr11 17369152 17370593 -133412960 + L2 LINE L2 1561 3270 -43 286 216 208 16 chr11 17370935 17371060 -133412493 - L2 LINE L2 0 3272 3124 29 47 0 0 chr11 17371963 17372006 -133411547 + GC_rich Low_complexity Low_complexity 1 43 0 202 95 24 48 chr11 17372134 17372176 -133411377 + (CCCCCG)n Simple_repeat Simple_repeat 6 46 0 366 74 0 0 chr11 17372315 17372369 -133411184 + (CGGGGG)n Simple_repeat Simple_repeat 2 55 0 34 42 0 0 chr11 17372575 17372623 -133410930 + GC_rich Low_complexity Low_complexity 1 48 0 328 258 105 24 chr11 17372785 17372909 -133410644 + MIR SINE MIR 117 250 -12 443 284 147 25 chr11 17373135 17373420 -133410133 + L2 LINE L2 2987 3306 -7 2140 90 10 7 chr11 17373425 17373713 -133409840 + AluSq SINE Alu 5 293 -20 369 0 0 0 chr11 17373759 17373800 -133409753 + (CA)n Simple_repeat Simple_repeat 1 41 0 1431 255 72 43 chr11 17374263 17374428 -133409125 + L1MC4a LINE L1 5319 5478 -2330 2319 120 0 0 chr11 17374428 17374729 -133408824 + AluSx SINE Alu 1 301 -11 1431 255 72 43 chr11 17374729 17375100 -133408453 + L1MC4a LINE L1 5478 5877 -1931 1728 188 18 0 chr11 17375100 17375377 -133408176 + AluJo SINE Alu 1 282 -30 181 0 0 0 chr11 17375377 17375397 -133408156 + (TAAA)n Simple_repeat Simple_repeat 1 140 0 1431 255 72 43 chr11 17375397 17375442 -133408111 + L1MC4a LINE L1 5877 5919 -1889 3057 187 88 36 chr11 17375717 17375850 -133407703 + L1MD2 LINE L1 5457 5582 -777 2164 136 0 0 chr11 17375850 17376144 -133407409 - AluSx SINE Alu -18 294 1 3057 187 88 36 chr11 17376144 17376624 -133406929 + L1MD2 LINE L1 5582 6130 -229 1835 141 4 11 chr11 17376624 17376934 -133406619 - AluSx SINE Alu 0 314 7 3057 187 88 36 chr11 17376934 17377174 -133406379 + L1MD2 LINE L1 6130 6356 -3 319 261 18 27 chr11 17377612 17377723 -133405830 + MIR SINE MIR 1 110 -152 34 15 0 45 chr11 17378021 17378045 -133405508 + AT_rich Low_complexity Low_complexity 1 25 -39 1647 193 11 0 chr11 17378045 17378330 -133405223 - AluJb SINE Alu -24 288 1 34 15 0 45 chr11 17378330 17378353 -133405200 + AT_rich Low_complexity Low_complexity 25 47 -17 2332 90 3 0 chr11 17378353 17378642 -133404911 - AluSp SINE Alu -23 290 1 34 15 0 45 chr11 17378642 17378660 -133404893 + AT_rich Low_complexity Low_complexity 47 64 0 2685 185 36 38 chr11 17378663 17379194 -133404359 + LTR26 LTR ERV1 52 581 -22 807 204 117 128 chr11 17379501 17379829 -133403724 - MLT2C2 LTR ERVL -8 456 133 1796 154 3 31 chr11 17379829 17380122 -133403431 + AluJb SINE Alu 5 289 -23 807 204 117 128 chr11 17380122 17380254 -133403299 - MLT2C2 LTR ERVL -331 133 1 2289 242 38 35 chr11 17380589 17381250 -133402303 - L1MC4 LINE L1 -142 7900 7238 1912 210 103 64 chr11 17381253 17381788 -133401765 - L1MC4 LINE L1 -812 6996 6442 315 0 0 0 chr11 17382140 17382175 -133401378 + (CA)n Simple_repeat Simple_repeat 2 36 0 1808 163 0 35 chr11 17382262 17382581 -133400972 - AluJo SINE Alu -4 308 1 345 47 0 0 chr11 17382968 17383011 -133400542 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 221 217 50 0 chr11 17383241 17383301 -133400252 + MIR SINE MIR 130 192 -70 2138 109 24 3 chr11 17383562 17383856 -133399697 + AluSp SINE Alu 1 300 -13 1995 141 17 0 chr11 17384091 17384442 -133399111 - AluSx SINE Alu 0 356 1 183 200 25 0 chr11 17385022 17385062 -133398491 - MIR SINE MIR -67 141 101 1198 196 123 15 chr11 17385063 17385323 -133398230 + AluJb SINE Alu 1 288 -24 2415 77 0 0 chr11 17385329 17385626 -133397927 - AluY SINE Alu -14 297 1 24 53 0 0 chr11 17385626 17385664 -133397889 + AT_rich Low_complexity Low_complexity 1 38 0 46 83 0 0 chr11 17385675 17385784 -133397769 + AT_rich Low_complexity Low_complexity 1 109 0 553 272 136 31 chr11 17386018 17386275 -133397278 - AluJo SINE Alu -16 286 3 2048 146 0 7 chr11 17386393 17386694 -133396859 - AluSx SINE Alu -13 299 1 1070 106 0 7 chr11 17387073 17387215 -133396338 + AluSx SINE Alu 23 163 -149 180 237 0 0 chr11 17387247 17387285 -133396268 + MIR SINE MIR 90 127 -135 324 87 0 0 chr11 17387285 17387331 -133396222 + L1MB7 LINE L1 6111 6156 -28 2009 120 0 0 chr11 17387331 17387639 -133395914 - AluSx SINE Alu 0 318 11 1059 177 64 0 chr11 17387663 17387866 -133395687 + L1MD1 LINE L1 6027 6242 0 2277 114 3 0 chr11 17388036 17388343 -133395210 + AluSq SINE Alu 1 308 -5 2203 99 0 3 chr11 17388611 17388893 -133394660 + AluSx SINE Alu 1 281 -31 36 0 0 0 chr11 17388893 17388929 -133394624 + AT_rich Low_complexity Low_complexity 1 36 0 1102 171 0 0 chr11 17389219 17389394 -133394159 - FRAM SINE Alu -4 172 1 1365 106 0 0 chr11 17389443 17389623 -133393930 - AluSq SINE Alu -3 310 131 1936 98 0 0 chr11 17389995 17390241 -133393312 + AluSx SINE Alu 55 300 -12 2210 107 7 0 chr11 17390241 17390573 -133392980 + AluSg SINE Alu 1 334 0 503 289 116 34 chr11 17391077 17391465 -133392088 + L1MC/D LINE L1 5318 5737 -2071 896 217 100 23 chr11 17391490 17391709 -133391844 + L1MB5 LINE L1 4538 4788 -1358 1706 185 10 22 chr11 17391709 17392023 -133391530 + AluJb SINE Alu 1 310 -2 896 217 100 23 chr11 17392023 17392103 -133391450 + L1MB5 LINE L1 4788 4860 -1286 739 112 0 0 chr11 17392121 17392219 -133391334 - U6 snRNA snRNA -9 98 1 3602 178 84 20 chr11 17392221 17393047 -133390506 + L1MB5 LINE L1 4846 5768 -406 2548 61 0 0 chr11 17393047 17393344 -133390209 - AluY SINE Alu -14 297 1 3602 178 84 20 chr11 17393344 17393677 -133389876 + L1MB5 LINE L1 5768 6078 -96 2273 86 3 32 chr11 17394164 17394479 -133389074 - AluY SINE Alu -5 306 1 581 172 47 8 chr11 17394618 17394746 -133388807 + L1M4 LINE L1 4890 5022 -1124 737 217 13 7 chr11 17394746 17394898 -133388655 + FRAM SINE Alu 1 146 -30 541 240 89 39 chr11 17394979 17395237 -133388316 + L1M4 LINE L1 5061 5331 -815 2303 81 10 3 chr11 17395237 17395535 -133388018 + AluSx SINE Alu 1 300 -12 221 282 39 13 chr11 17395687 17395765 -133387788 - L2 LINE L2 -1 3312 3233 21 0 0 0 chr11 17396493 17396514 -133387039 + GC_rich Low_complexity Low_complexity 1 21 0 202 231 0 31 chr11 17396585 17396650 -133386903 + (CGGGG)n Simple_repeat Simple_repeat 5 67 0 424 202 13 48 chr11 17396762 17397175 -133386378 + A-rich Low_complexity Low_complexity 1 398 0 256 197 34 51 chr11 17397293 17397471 -133386082 + (CACAA)n Simple_repeat Simple_repeat 1 175 0 555 62 0 0 chr11 17397656 17397736 -133385817 + (A)n Simple_repeat Simple_repeat 1 80 0 42 57 0 0 chr11 17397754 17397824 -133385729 + AT_rich Low_complexity Low_complexity 1 70 0 2100 131 10 0 chr11 17397841 17398147 -133385406 + AluSx SINE Alu 1 309 -3 1070 212 28 5 chr11 17398147 17398359 -133385194 + AluJo SINE Alu 72 288 -24 45233 36 1 2 chr11 17398428 17404592 -133378961 - L1PA2 LINE L1 0 6155 1 1391 217 54 50 chr11 17404592 17404997 -133378556 + L1MC4 LINE L1 7099 7508 -534 2251 129 0 0 chr11 17404997 17405306 -133378247 - AluSx SINE Alu -3 309 1 1391 217 54 50 chr11 17405306 17405343 -133378210 + L1MC4 LINE L1 7508 7543 -499 368 200 35 0 chr11 17405352 17405467 -133378086 + (TA)n Simple_repeat Simple_repeat 1 119 0 2390 98 0 0 chr11 17405471 17405767 -133377786 + AluSg SINE Alu 1 296 -14 21575 138 28 20 chr11 17405782 17408279 -133375274 + L1M1 LINE L1 18 2493 -5072 2312 77 23 3 chr11 17408279 17408578 -133374975 + AluY SINE Alu 1 305 -6 21575 138 28 20 chr11 17408578 17408638 -133374915 + L1M1 LINE L1 2493 2551 -5014 1937 110 58 27 chr11 17408638 17408930 -133374623 + AluSg SINE Alu 1 301 -9 21575 138 28 20 chr11 17408930 17409497 -133374056 + L1M1 LINE L1 2551 3179 -4386 2296 81 16 23 chr11 17409497 17409807 -133373746 + AluSp SINE Alu 1 308 -5 21575 138 28 20 chr11 17409807 17410289 -133373264 + L1M1 LINE L1 3179 3656 -3909 1901 189 121 13 chr11 17410291 17410791 -133372762 - SATR1 Satellite Satellite 0 554 1 2451 164 98 17 chr11 17410818 17414102 -133369451 - SATR1 Satellite Satellite -393 3550 1 844 127 242 0 chr11 17414174 17414339 -133369214 - SATR1 Satellite Satellite -120 350 146 232 204 0 0 chr11 17414363 17414407 -133369146 - AluJ/monomer SINE Alu -255 44 1 3436 226 26 23 chr11 17414447 17415435 -133368118 + L1MB3 LINE L1 4818 5802 -381 1968 121 4 4 chr11 17415435 17415715 -133367838 + AluSx SINE Alu 1 280 -32 222 37 0 0 chr11 17415717 17415744 -133367809 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 3436 226 26 23 chr11 17415744 17415833 -133367720 + L1MB3 LINE L1 5802 5889 -294 2280 117 0 0 chr11 17415833 17416132 -133367421 + AluSx SINE Alu 3 301 -11 3436 226 26 23 chr11 17416132 17416385 -133367168 + L1MB3 LINE L1 5889 6156 -27 34 0 0 0 chr11 17416399 17416433 -133367120 + AT_rich Low_complexity Low_complexity 1 34 0 2339 95 0 3 chr11 17417827 17418123 -133365430 + AluSg SINE Alu 1 295 -15 190 327 44 26 chr11 17418500 17418613 -133364940 + L2 LINE L2 3158 3272 0 2216 94 0 10 chr11 17418675 17418972 -133364581 - AluSc SINE Alu -15 294 1 1300 56 0 0 chr11 17418999 17419160 -133364393 + L1PA5 LINE L1 5994 6154 0 23 0 0 0 chr11 17419496 17419519 -133364034 + AT_rich Low_complexity Low_complexity 1 23 0 6992 77 20 55 chr11 17419519 17421807 -133361746 - SVA Other Other -518 1386 57 570 15 0 0 chr11 17421807 17421874 -133361679 + (GGGAGA)n Simple_repeat Simple_repeat 1 67 0 2572 69 3 0 chr11 17423318 17423623 -133359930 + AluSp SINE Alu 1 306 -7 1260 215 219 25 chr11 17423641 17424600 -133358953 - SATR1 Satellite Satellite -2 1145 1 1405 214 237 43 chr11 17424631 17426615 -133356938 - SATR1 Satellite Satellite -4 2367 1 1173 204 264 18 chr11 17426653 17429185 -133354368 - SATR1 Satellite Satellite -10 3154 1 11508 170 32 31 chr11 17429185 17429332 -133354221 + L1 LINE L1 2242 2387 -3759 2174 125 0 6 chr11 17429332 17429644 -133353909 + AluSx SINE Alu 3 312 0 11508 170 32 31 chr11 17429644 17430024 -133353529 + L1 LINE L1 2387 2765 -3381 2220 120 3 0 chr11 17430024 17430325 -133353228 + AluSx SINE Alu 1 302 -10 11508 170 32 31 chr11 17430325 17430850 -133352703 + L1 LINE L1 2765 3288 -2858 2045 158 0 0 chr11 17430850 17431153 -133352400 + AluSx SINE Alu 1 303 -9 11508 170 32 31 chr11 17431153 17432454 -133351099 + L1 LINE L1 3288 4599 -1547 375 221 173 0 chr11 17432492 17432596 -133350957 - MER5A DNA MER1_type 0 189 68 1139 114 0 13 chr11 17432596 17432779 -133350774 - AluJb SINE Alu 0 312 134 205 241 12 96 chr11 17432779 17432862 -133350691 - MER5A DNA MER1_type -113 76 1 2248 103 0 3 chr11 17432938 17433240 -133350313 - AluSg SINE Alu -9 301 1 25 31 0 0 chr11 17433333 17433365 -133350188 + AT_rich Low_complexity Low_complexity 1 32 0 206 296 0 0 chr11 17433398 17433442 -133350111 + L2 LINE L2 3210 3253 -19 433 273 45 0 chr11 17433539 17433649 -133349904 - L2 LINE L2 -10 3303 3189 2221 127 0 16 chr11 17434202 17434517 -133349036 - AluSx SINE Alu -2 310 1 358 298 149 12 chr11 17434677 17434838 -133348715 + MIR3 SINE MIR 20 202 -6 591 126 0 0 chr11 17434952 17435047 -133348506 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 22 0 0 0 chr11 17435078 17435100 -133348453 + AT_rich Low_complexity Low_complexity 1 22 0 2140 117 0 14 chr11 17435102 17435393 -133348160 + AluSx SINE Alu 1 287 -25 1108 202 0 5 chr11 17436212 17436415 -133347138 - AluJo SINE Alu -94 218 17 2028 133 0 0 chr11 17436435 17436737 -133346816 + AluSx SINE Alu 5 306 0 2157 103 17 0 chr11 17436747 17437038 -133346515 + AluSx SINE Alu 1 296 -16 446 288 86 50 chr11 17437643 17437865 -133345688 - L2 LINE L2 -3 3269 3040 1543 231 100 45 chr11 17437926 17438027 -133345526 - MLT1G LTR MaLR 0 590 496 900 149 0 8 chr11 17438027 17438161 -133345392 + FLAM_C SINE Alu 1 133 0 1543 231 100 45 chr11 17438161 17438591 -133344962 - MLT1G LTR MaLR -94 496 30 1295 177 139 4 chr11 17438620 17438886 -133344667 - AluJo SINE Alu -10 302 1 2167 119 0 7 chr11 17439070 17439373 -133344180 - AluSx SINE Alu -1 311 11 426 229 61 23 chr11 17439386 17439517 -133344036 + MIR SINE MIR 63 198 -64 1363 192 69 10 chr11 17439519 17439810 -133343743 - MER44D DNA MER2_type -2 607 30 2233 113 0 0 chr11 17439849 17440142 -133343411 + AluSx SINE Alu 1 293 -19 1532 218 52 0 chr11 17440171 17440497 -133343056 - MER63 DNA MER1_type 0 1062 720 1020 205 59 72 chr11 17440497 17440872 -133342681 + HAL1 LINE L1 1208 1577 -930 2404 76 10 3 chr11 17440872 17441176 -133342377 + AluSq SINE Alu 1 306 -7 594 232 53 16 chr11 17441190 17441380 -133342173 - L2 LINE L2 -983 2331 2135 361 243 92 53 chr11 17441380 17441532 -133342021 + HAL1 LINE L1 1679 1836 -671 404 267 140 20 chr11 17441547 17441847 -133341706 + HAL1 LINE L1 1864 2199 -308 2257 151 30 10 chr11 17441877 17442275 -133341278 + L1MB5 LINE L1 5625 6030 -144 614 129 40 20 chr11 17442276 17442377 -133341176 - FLAM_C SINE Alu -15 128 26 865 152 21 7 chr11 17442386 17442531 -133341022 + L1MB5 LINE L1 6022 6168 -6 2308 97 0 0 chr11 17442566 17442856 -133340697 + AluSg SINE Alu 1 290 -20 1766 165 7 0 chr11 17442985 17443258 -133340295 + AluSx SINE Alu 1 275 -37 1617 121 15 26 chr11 17443309 17443574 -133339979 + AluSq SINE Alu 45 306 -7 2238 80 0 0 chr11 17443576 17443850 -133339703 + AluY SINE Alu 1 274 -37 1658 122 173 0 chr11 17444026 17444280 -133339273 - AluSx SINE Alu -4 298 1 610 51 26 0 chr11 17444666 17444744 -133338809 - MADE1 DNA Mariner 0 80 1 441 132 33 88 chr11 17445364 17445455 -133338098 - U14 snRNA snRNA -1 86 1 499 191 145 40 chr11 17445569 17445721 -133337832 + MER58A DNA MER1_type 30 197 -27 439 133 33 78 chr11 17446489 17446579 -133336974 - U14 snRNA snRNA -1 86 1 201 260 96 0 chr11 17446621 17446694 -133336859 - MIR SINE MIR -4 258 179 2100 89 7 14 chr11 17446827 17447109 -133336444 + AluSx SINE Alu 12 291 -21 1310 82 12 0 chr11 17447110 17447281 -133336272 + AluSq SINE Alu 127 299 -14 722 178 82 0 chr11 17447281 17447416 -133336137 - FRAM SINE Alu -30 146 1 218 283 117 0 chr11 17447444 17447504 -133336049 + L2 LINE L2 3242 3308 -5 536 281 16 47 chr11 17447575 17447767 -133335786 + MIR SINE MIR 44 229 -33 2360 68 7 0 chr11 17449181 17449476 -133334077 - AluSp SINE Alu -16 297 1 1161 159 31 9 chr11 17449496 17449722 -133333831 + AluJb SINE Alu 82 312 0 2505 41 0 3 chr11 17449950 17450241 -133333312 + AluY SINE Alu 1 290 -21 624 270 206 48 chr11 17450433 17451283 -133332270 + L2 LINE L2 2293 3312 -1 2280 81 10 3 chr11 17451433 17451731 -133331822 - AluSx SINE Alu -12 300 1 890 159 114 57 chr11 17452022 17452267 -133331286 - L1MB7 LINE L1 -16 6168 5910 2105 78 4 0 chr11 17452268 17452526 -133331027 + AluSg SINE Alu 1 259 -51 226 173 0 120 chr11 17452530 17452605 -133330948 - AluSg/x SINE Alu -151 149 84 1031 189 45 5 chr11 17452605 17452806 -133330747 - AluJo SINE Alu -92 220 12 549 122 0 0 chr11 17452823 17452905 -133330648 - L1MB7 LINE L1 -311 5867 5786 270 0 0 0 chr11 17452906 17452936 -133330617 + (T)n Simple_repeat Simple_repeat 1 30 0 1642 74 5 0 chr11 17452943 17453145 -133330408 - AluSp SINE Alu -110 203 1 861 127 63 21 chr11 17453154 17453296 -133330257 - AluSx SINE Alu -11 299 152 327 231 58 29 chr11 17453298 17453402 -133330151 - L1MB7 LINE L1 -54 6130 6024 1140 104 0 37 chr11 17453405 17453569 -133329984 - AluSx SINE Alu -154 158 1 1672 153 51 69 chr11 17453569 17453883 -133329670 - L1MB7 LINE L1 -815 5331 5026 921 183 12 30 chr11 17453883 17454052 -133329501 - FRAM SINE Alu 0 166 1 1672 153 51 69 chr11 17454052 17454187 -133329366 - L1MB7 LINE L1 -1120 5026 4890 2023 128 7 26 chr11 17454326 17454632 -133328921 + AluJb SINE Alu 1 300 -12 228 259 0 0 chr11 17454633 17454687 -133328866 + L1MDa LINE L1 1644 1697 -4843 319 235 31 41 chr11 17454687 17454785 -133328768 + L1MC5 LINE L1 7805 7901 -60 2060 100 24 14 chr11 17455169 17455282 -133328271 + AluSx SINE Alu 1 111 -201 1856 203 109 18 chr11 17455282 17455731 -133327822 + LTR2B LTR ERV1 1 490 0 2060 100 24 14 chr11 17455731 17455908 -133327645 + AluSx SINE Alu 111 294 -18 2365 75 24 0 chr11 17457776 17458069 -133325484 - AluSq SINE Alu -13 300 1 237 108 0 0 chr11 17459178 17459215 -133324338 + (TG)n Simple_repeat Simple_repeat 1 37 0 2136 122 7 0 chr11 17459714 17460010 -133323543 + AluSp SINE Alu 1 298 -15 322 330 20 10 chr11 17460067 17460167 -133323386 + L3 LINE CR1 1446 1546 -31 1951 141 0 30 chr11 17460270 17460574 -133322979 - AluJb SINE Alu -17 295 1 1518 109 23 5 chr11 17460601 17460821 -133322732 + L1PA10 LINE L1 5944 6167 -1 1734 122 79 36 chr11 17461925 17462204 -133321349 + AluSx SINE Alu 1 291 -21 584 100 0 0 chr11 17462321 17462401 -133321152 - MADE1 DNA Mariner 0 80 1 2363 62 10 3 chr11 17462801 17463091 -133320462 - AluY SINE Alu -19 292 1 1748 157 3 33 chr11 17463166 17463465 -133320088 - AluJb SINE Alu -21 291 2 199 372 21 0 chr11 17463595 17463689 -133319864 - L2 LINE L2 0 3272 3177 2138 108 11 0 chr11 17463969 17464255 -133319298 + AluSx SINE Alu 1 289 -23 1529 189 3 57 chr11 17464494 17464811 -133318742 + AluJb SINE Alu 1 300 -12 2189 77 0 54 chr11 17464821 17465156 -133318397 + AluY SINE Alu 1 319 0 1596 141 22 32 chr11 17465161 17465438 -133318115 + AluSx SINE Alu 3 276 -36 278 80 20 0 chr11 17465448 17465498 -133318055 + (TAAAA)n Simple_repeat Simple_repeat 5 55 0 2205 115 3 0 chr11 17465569 17465864 -133317689 - AluSx SINE Alu -16 296 1 2110 114 6 16 chr11 17467158 17467473 -133316080 + AluSx SINE Alu 1 312 0 1542 211 47 19 chr11 17467723 17468084 -133315469 + MLT1A2 LTR MaLR 3 373 -1 2256 97 3 0 chr11 17468431 17468721 -133314832 - AluSp SINE Alu -22 291 1 1132 130 6 12 chr11 17468922 17469091 -133314462 + AluSg/x SINE Alu 130 297 -13 21 0 0 0 chr11 17469185 17469206 -133314347 + AT_rich Low_complexity Low_complexity 1 21 0 1756 116 0 32 chr11 17469797 17470047 -133313506 - AluSx SINE Alu -70 242 1 1841 167 13 10 chr11 17470057 17470356 -133313197 - L1PB4 LINE L1 -2 6154 5855 682 231 182 11 chr11 17470400 17470664 -133312889 - L1ME3A LINE L1 0 6170 5862 2569 64 0 0 chr11 17471117 17471428 -133312125 - AluY SINE Alu 0 311 1 2484 42 0 3 chr11 17471680 17471969 -133311584 + AluY SINE Alu 1 288 -23 190 0 67 0 chr11 17471978 17472008 -133311545 + (CAA)n Simple_repeat Simple_repeat 2 33 0 651 247 109 10 chr11 17473078 17473126 -133310427 - MIR SINE MIR -1 261 219 216 97 0 0 chr11 17473126 17473157 -133310396 + (TG)n Simple_repeat Simple_repeat 2 32 0 651 247 109 10 chr11 17473157 17473333 -133310220 - MIR SINE MIR -43 219 19 459 231 12 162 chr11 17473813 17473968 -133309585 - MIR SINE MIR -41 221 115 2519 69 0 0 chr11 17473968 17474271 -133309282 + AluY SINE Alu 1 303 -8 459 231 12 162 chr11 17474271 17474362 -133309191 - MIR SINE MIR -147 115 12 3047 58 3 6 chr11 17474909 17475271 -133308282 - L1PA8 LINE L1 -8 6164 5804 2252 106 0 0 chr11 17475353 17475645 -133307908 + AluSx SINE Alu 3 294 -18 1885 167 7 3 chr11 17475653 17475958 -133307595 + AluSx SINE Alu 1 306 -6 1110 132 0 66 chr11 17476081 17476263 -133307290 - AluSq SINE Alu -141 172 3 2423 80 0 0 chr11 17476556 17476857 -133306696 + AluY SINE Alu 2 302 -9 26 64 0 0 chr11 17477167 17477214 -133306339 + AT_rich Low_complexity Low_complexity 1 47 0 2011 136 3 3 chr11 17477393 17477695 -133305858 - AluSx SINE Alu -10 302 1 230 121 0 0 chr11 17477696 17477729 -133305824 - U7 snRNA snRNA -29 34 2 268 262 75 96 chr11 17477731 17477845 -133305708 + L3 LINE CR1 741 851 -726 1364 190 9 58 chr11 17477845 17478171 -133305382 + AluJo SINE Alu 1 310 -2 268 262 75 96 chr11 17478171 17478243 -133305310 + L3 LINE CR1 851 923 -654 596 294 15 44 chr11 17478440 17478644 -133304909 + L3 LINE CR1 1278 1475 -102 184 371 57 0 chr11 17478906 17478976 -133304577 - MIR SINE MIR 0 262 189 1331 199 109 0 chr11 17479101 17479357 -133304196 - AluJo SINE Alu -26 286 3 2045 143 0 7 chr11 17479475 17479776 -133303777 - AluSx SINE Alu -13 299 1 1038 113 0 7 chr11 17480155 17480297 -133303256 + AluSx SINE Alu 23 163 -149 192 237 0 0 chr11 17480329 17480367 -133303186 + MIR SINE MIR 90 127 -135 316 87 0 0 chr11 17480367 17480413 -133303140 + L1MB7 LINE L1 6111 6156 -28 1770 167 0 0 chr11 17480413 17480721 -133302832 - AluSx SINE Alu 0 318 11 1021 177 64 0 chr11 17480745 17480948 -133302605 + L1MD1 LINE L1 6027 6242 0 2243 114 3 0 chr11 17481118 17481425 -133302128 + AluSq SINE Alu 1 308 -5 2255 109 0 3 chr11 17481694 17482005 -133301548 + AluSx SINE Alu 1 310 -2 1093 171 0 0 chr11 17482302 17482477 -133301076 - FRAM SINE Alu -4 172 1 1326 111 0 0 chr11 17482526 17482706 -133300847 - AluSq SINE Alu -3 310 131 1874 102 0 0 chr11 17483078 17483324 -133300229 + AluSx SINE Alu 55 300 -12 2178 107 7 0 chr11 17483324 17483652 -133299901 + AluSg SINE Alu 1 330 0 475 282 117 34 chr11 17484158 17484544 -133299009 + L1MC/D LINE L1 5320 5737 -2071 885 218 89 21 chr11 17484589 17484788 -133298765 + L1MB5 LINE L1 4562 4787 -1359 1683 185 10 22 chr11 17484788 17485102 -133298451 + AluJb SINE Alu 1 310 -2 885 218 89 21 chr11 17485102 17485182 -133298371 + L1MB5 LINE L1 4787 4860 -1286 729 112 0 0 chr11 17485200 17485298 -133298255 - U6 snRNA snRNA -9 98 1 3526 178 84 20 chr11 17485300 17486126 -133297427 + L1MB5 LINE L1 4846 5768 -406 2500 61 0 0 chr11 17486126 17486423 -133297130 - AluY SINE Alu -14 297 1 3526 178 84 20 chr11 17486423 17486756 -133296797 + L1MB5 LINE L1 5768 6078 -96 2605 49 3 0 chr11 17487243 17487548 -133296005 - AluY SINE Alu -5 306 1 1864 163 3 7 chr11 17487602 17487908 -133295645 - AluJb SINE Alu -7 305 1 225 188 0 21 chr11 17489752 17489800 -133293753 - L2 LINE L2 -4 3309 3263 222 91 0 0 chr11 17490026 17490059 -133293494 + (CATATA)n Simple_repeat Simple_repeat 1 33 0 267 221 105 12 chr11 17490217 17490303 -133293250 - L1MC4a LINE L1 -1846 5962 5869 1285 86 0 0 chr11 17490339 17490501 -133293052 - AluSg/x SINE Alu -6 304 143 374 173 14 14 chr11 17490502 17490583 -133292970 - Alu SINE Alu -251 51 1 526 288 119 33 chr11 17490592 17490640 -133292913 - L1MC4a LINE L1 -2020 5788 5746 1748 178 4 0 chr11 17490640 17490950 -133292603 - AluJo SINE Alu 0 313 3 526 288 119 33 chr11 17490950 17491352 -133292201 - L1MC4a LINE L1 -2062 5746 5298 24 32 0 0 chr11 17491496 17491527 -133292026 + AT_rich Low_complexity Low_complexity 1 31 0 1556 175 7 41 chr11 17492784 17493095 -133290458 - AluJb SINE Alu 0 301 1 775 229 16 27 chr11 17493127 17493315 -133290238 - MER58A DNA MER1_type -1 223 38 447 156 9 3 chr11 17493595 17493704 -133289849 - FRAM SINE Alu -36 140 1 675 198 71 52 chr11 17493724 17493992 -133289561 - L1MC5 LINE L1 -160 7801 7529 490 78 0 0 chr11 17493994 17494058 -133289495 - Alu SINE Alu -14 298 235 722 201 138 17 chr11 17494147 17494321 -133289232 + MER58A DNA MER1_type 30 224 0 698 186 100 41 chr11 17494326 17494546 -133289007 - L1MC5 LINE L1 -466 7495 7263 332 170 0 110 chr11 17494738 17494760 -133288793 - L1MC5 LINE L1 -741 7220 7197 1216 168 53 0 chr11 17494760 17494968 -133288585 + MER20 DNA MER1_type 1 219 0 332 170 0 110 chr11 17494968 17495045 -133288508 - L1MC5 LINE L1 -764 7197 7132 1769 116 64 19 chr11 17495059 17495326 -133288227 - AluSg SINE Alu -21 289 11 2090 147 3 0 chr11 17495380 17495687 -133287866 + AluSx SINE Alu 2 309 -3 308 265 49 0 chr11 17495688 17495790 -133287763 - L1MC5 LINE L1 -852 7109 7003 592 132 23 62 chr11 17495804 17495933 -133287620 + AluJb SINE Alu 2 125 -187 21 0 0 0 chr11 17496500 17496521 -133287032 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr11 17496811 17496844 -133286709 + AT_rich Low_complexity Low_complexity 1 33 0 2244 117 0 0 chr11 17496847 17497145 -133286408 - AluSx SINE Alu -14 298 1 869 249 36 12 chr11 17497445 17497698 -133285855 + MIR SINE MIR 3 261 -1 1344 167 4 17 chr11 17497842 17498076 -133285477 - AluSx SINE Alu -81 231 1 2161 93 21 3 chr11 17499128 17499419 -133284134 - AluSq SINE Alu -12 301 6 24 67 0 0 chr11 17499489 17499534 -133284019 + AT_rich Low_complexity Low_complexity 1 45 0 223 154 0 26 chr11 17499712 17499751 -133283802 + CT-rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr11 17499926 17499954 -133283599 + AT_rich Low_complexity Low_complexity 1 28 0 2367 105 0 6 chr11 17500060 17500374 -133283179 + AluSx SINE Alu 1 312 0 2273 98 0 3 chr11 17500442 17500739 -133282814 + AluSq SINE Alu 1 296 -17 2498 67 0 0 chr11 17500957 17501255 -133282298 - AluY SINE Alu -11 300 3 2853 13 0 0 chr11 17501852 17502163 -133281390 - AluYb8 SINE Alu -7 311 1 245 240 0 0 chr11 17502768 17502818 -133280735 + (TG)n Simple_repeat Simple_repeat 1 50 0 401 292 58 8 chr11 17502878 17502998 -133280555 + L2 LINE L2 3187 3312 -1 2141 130 0 0 chr11 17503180 17503473 -133280080 + AluSx SINE Alu 1 293 -19 1690 149 23 30 chr11 17503741 17503902 -133279651 - AluJo SINE Alu -12 300 140 2221 105 10 0 chr11 17503902 17504196 -133279357 - AluSp SINE Alu -16 297 1 1690 149 23 30 chr11 17504196 17504336 -133279217 - AluJo SINE Alu -172 140 1 315 0 0 0 chr11 17505213 17505248 -133278305 + (TG)n Simple_repeat Simple_repeat 2 36 0 28 0 0 0 chr11 17506156 17506184 -133277369 + AT_rich Low_complexity Low_complexity 1 28 0 2322 81 20 0 chr11 17506953 17507248 -133276305 - AluSx SINE Alu -11 301 1 513 251 5 82 chr11 17507263 17507458 -133276095 + LTR41 LTR ERVL 2 181 -592 1142 189 9 40 chr11 17508167 17508395 -133275158 - MER58A DNA MER1_type -3 221 1 2303 80 0 17 chr11 17508451 17508751 -133274802 - AluSq SINE Alu -18 295 1 2038 126 14 0 chr11 17508772 17509058 -133274495 - AluSx SINE Alu -18 294 5 709 199 0 22 chr11 17509672 17509808 -133273745 + FLAM_A SINE Alu 1 133 0 2105 222 39 16 chr11 17509856 17510373 -133273180 + L1MB8 LINE L1 5648 6176 -2 453 333 185 4 chr11 17510384 17510739 -133272814 - L2 LINE L2 -214 3099 2691 1074 153 38 0 chr11 17510805 17510988 -133272565 - AluSg/x SINE Alu -1 309 120 849 206 54 17 chr11 17510990 17511273 -133272280 - L1MD3 LINE L1 -1 7987 7488 1832 261 126 36 chr11 17511274 17511524 -133272029 - L2 LINE L2 -632 2682 2456 555 149 44 18 chr11 17511524 17511638 -133271915 + L1MC1 LINE L1 6217 6333 0 1832 261 126 36 chr11 17511638 17512072 -133271481 - L2 LINE L2 -858 2456 1937 417 191 0 5 chr11 17512076 17512256 -133271297 + AluJo SINE Alu 5 279 -33 219 36 0 0 chr11 17512256 17512284 -133271269 + (TCCA)n Simple_repeat Simple_repeat 3 30 0 795 235 86 8 chr11 17512288 17512522 -133271031 - L2 LINE L2 -1374 1940 1689 476 281 231 46 chr11 17512526 17513028 -133270525 + L2 LINE L2 2158 2752 -562 521 217 19 0 chr11 17513032 17513138 -133270415 - MER58B DNA MER1_type 0 341 234 2070 142 7 0 chr11 17513194 17513503 -133270050 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr11 17513521 17513542 -133270011 + AT_rich Low_complexity Low_complexity 1 21 0 282 350 124 62 chr11 17513735 17514026 -133269527 + L2 LINE L2 2963 3271 -1 2155 125 3 3 chr11 17514150 17514461 -133269092 + AluSx SINE Alu 1 311 -1 2346 74 16 3 chr11 17514468 17514778 -133268775 + THE1C-int LTR MaLR 1263 1576 -4 1663 142 86 10 chr11 17514782 17515085 -133268468 + THE1C LTR MaLR 1 326 -49 1835 163 0 26 chr11 17515973 17516279 -133267274 + AluSx SINE Alu 5 302 -10 2091 97 38 0 chr11 17517474 17517762 -133265791 + AluSp SINE Alu 1 299 -14 672 106 0 92 chr11 17518400 17518541 -133265012 - Charlie5 DNA MER1_type 0 2624 2497 1299 149 47 8 chr11 17518541 17518776 -133264777 - MER2 DNA MER2_type 0 345 102 313 97 0 32 chr11 17518819 17518881 -133264672 + L1MA3 LINE L1 6246 6305 0 757 181 14 0 chr11 17518887 17519025 -133264528 - MER2 DNA MER2_type -190 155 16 496 159 0 0 chr11 17519188 17519276 -133264277 + AluSg/x SINE Alu 218 305 -4 22 56 0 0 chr11 17519546 17519582 -133263971 + AT_rich Low_complexity Low_complexity 1 36 0 1033 249 5 5 chr11 17521080 17521301 -133262252 + MIR SINE MIR 21 241 -21 360 118 73 0 chr11 17521386 17521454 -133262099 + MSTB1 LTR MaLR 360 432 0 556 110 30 0 chr11 17521680 17521780 -133261773 + L1MB3 LINE L1 6081 6183 0 2126 129 0 13 chr11 17522689 17522992 -133260561 + AluSq SINE Alu 3 301 -12 352 235 25 0 chr11 17523099 17523180 -133260373 - MIR3 SINE MIR 0 208 126 195 42 0 0 chr11 17523614 17523638 -133259915 + (TG)n Simple_repeat Simple_repeat 2 25 0 203 173 27 53 chr11 17524233 17524308 -133259245 + GA-rich Low_complexity Low_complexity 5 77 0 243 243 149 0 chr11 17524389 17524463 -133259090 + MLT1K LTR MaLR 504 588 0 275 308 75 50 chr11 17524477 17524597 -133258956 + MIR SINE MIR 21 143 -65 29 28 0 0 chr11 17524966 17525002 -133258551 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr11 17525275 17525318 -133258235 + AT_rich Low_complexity Low_complexity 1 43 0 1495 183 16 0 chr11 17525923 17526175 -133257378 - AluJb SINE Alu -11 301 46 693 252 0 0 chr11 17526396 17526523 -133257030 + FLAM_A SINE Alu 1 127 -6 2169 93 0 0 chr11 17526749 17527019 -133256534 + AluSx SINE Alu 35 304 -8 40 0 0 20 chr11 17527594 17527605 -133255948 + AT_rich Low_complexity Low_complexity 1 11 -39 2441 62 7 0 chr11 17527605 17527895 -133255658 + AluSp SINE Alu 1 292 -21 40 0 0 20 chr11 17527895 17527934 -133255619 + AT_rich Low_complexity Low_complexity 11 50 0 758 216 68 5 chr11 17527945 17528135 -133255418 - MIR SINE MIR -60 202 1 960 222 80 42 chr11 17529277 17529671 -133253882 - MLT2D LTR ERVL -64 400 1 1607 195 19 7 chr11 17530085 17530392 -133253161 + AluJb SINE Alu 1 311 -1 2244 108 0 16 chr11 17531591 17531906 -133251647 + AluSx SINE Alu 1 310 -2 2432 139 26 3 chr11 17531981 17532368 -133251185 + MER57A LTR ERV1 8 403 0 219 259 24 71 chr11 17532404 17532489 -133251064 - L3 LINE CR1 -196 1381 1301 2008 117 3 7 chr11 17532562 17532874 -133250679 + AluSx SINE Alu 1 311 0 1414 172 20 63 chr11 17532945 17533247 -133250306 - AluJo SINE Alu -19 293 5 208 274 0 20 chr11 17533519 17533570 -133249983 - MIR3 SINE MIR -48 160 111 242 303 92 9 chr11 17533575 17533684 -133249869 - L3 LINE CR1 -341 1236 1119 1117 200 0 10 chr11 17533711 17533916 -133249637 + AluJb SINE Alu 104 306 -6 261 302 16 0 chr11 17534950 17535013 -133248540 - L3 LINE CR1 -115 1462 1399 2283 80 10 10 chr11 17535042 17535344 -133248209 + AluSp SINE Alu 11 312 -1 617 179 179 34 chr11 17535440 17535675 -133247878 - L1MC5 LINE L1 -48 7913 7645 355 218 13 13 chr11 17535675 17535753 -133247800 + MIR SINE MIR 104 181 -81 1806 174 0 7 chr11 17536515 17536802 -133246751 - AluJb SINE Alu -21 291 7 2075 119 7 0 chr11 17536876 17537161 -133246392 + AluSp SINE Alu 1 287 -26 2482 78 0 0 chr11 17537835 17538141 -133245412 + AluY SINE Alu 1 306 -5 310 286 130 34 chr11 17540289 17540357 -133243196 + MIR SINE MIR 2 62 -200 2528 60 0 0 chr11 17540357 17540655 -133242898 + AluY SINE Alu 1 298 -13 310 286 130 34 chr11 17540655 17540824 -133242729 + MIR SINE MIR 62 262 0 662 135 108 36 chr11 17541322 17541433 -133242120 - FLAM_C SINE Alu -13 120 2 240 252 52 26 chr11 17541507 17541622 -133241931 + L1MC4 LINE L1 7924 8041 -1 880 252 179 50 chr11 17541652 17542111 -133241442 + MLT1H LTR MaLR 36 547 -2 225 360 0 11 chr11 17542528 17542617 -133240936 + L2 LINE L2 2966 3053 -219 1297 250 76 17 chr11 17542847 17543191 -133240362 + MLT1K LTR MaLR 225 588 0 2094 86 0 76 chr11 17543333 17543661 -133239892 - AluSx SINE Alu 0 305 1 2041 105 7 11 chr11 17543846 17544159 -133239394 + AluSq SINE Alu 8 319 0 2165 116 0 10 chr11 17545224 17545526 -133238027 - AluSx SINE Alu -13 299 1 658 172 107 8 chr11 17545566 17545688 -133237865 + AluJo SINE Alu 2 135 -177 1575 193 13 29 chr11 17545714 17546030 -133237523 + AluJo SINE Alu 1 311 -1 747 249 69 11 chr11 17546124 17546313 -133237240 - MIR SINE MIR -27 235 36 24 53 0 0 chr11 17546404 17546442 -133237111 + AT_rich Low_complexity Low_complexity 1 38 0 2174 139 0 0 chr11 17547026 17547335 -133236218 + AluSx SINE Alu 1 309 -3 595 183 110 24 chr11 17547395 17547559 -133235994 - MER33 DNA MER1_type -124 200 23 24 0 0 0 chr11 17547723 17547747 -133235806 + AT_rich Low_complexity Low_complexity 1 24 0 1867 107 89 15 chr11 17547784 17547917 -133235636 - AluSx SINE Alu -22 290 168 2903 16 0 0 chr11 17547917 17548235 -133235318 - AluYb8 SINE Alu 0 318 1 1867 107 89 15 chr11 17548235 17548371 -133235182 - AluSx SINE Alu -144 168 1 1691 188 3 7 chr11 17548381 17548668 -133234885 - AluJo SINE Alu -26 286 1 1429 200 33 7 chr11 17548840 17549115 -133234438 - AluJo SINE Alu -30 282 1 285 324 0 0 chr11 17549291 17549359 -133234194 - L2 LINE L2 0 3313 3246 947 186 62 38 chr11 17549383 17549593 -133233960 + AluJb SINE Alu 87 301 -11 212 0 36 0 chr11 17549702 17549730 -133233823 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1956 118 0 0 chr11 17549745 17550000 -133233553 + AluSx SINE Alu 1 255 -57 512 211 111 65 chr11 17550005 17550204 -133233349 - MER21B LTR ERV1 -225 638 431 * 1184 211 56 9 chr11 17550197 17550554 -133232999 - MER21B LTR ERV1 -357 506 104 311 226 79 113 chr11 17550576 17550694 -133232859 + L1ME3A LINE L1 5786 5906 -264 721 179 0 17 chr11 17550694 17550811 -133232742 + FLAM_A SINE Alu 5 119 -14 311 226 79 113 chr11 17550811 17550824 -133232729 + L1ME3A LINE L1 5906 5918 -252 525 16 0 0 chr11 17550824 17550886 -133232667 + (CA)n Simple_repeat Simple_repeat 2 63 0 311 226 79 113 chr11 17550886 17550930 -133232623 + L1ME3A LINE L1 5918 5956 -214 2300 100 3 3 chr11 17550988 17551287 -133232266 + AluSp SINE Alu 1 299 -14 455 302 88 21 chr11 17551287 17551470 -133232083 + L1ME3A LINE L1 5966 6164 -6 1665 155 67 7 chr11 17551481 17551765 -133231788 + AluJb SINE Alu 1 301 -11 1865 176 3 13 chr11 17552010 17552322 -133231231 - AluJb SINE Alu -3 309 1 939 166 79 67 chr11 17552365 17552572 -133230981 + MER44D DNA MER2_type 1 204 -2287 2230 94 16 16 chr11 17552572 17552879 -133230674 + AluSx SINE Alu 1 307 -5 939 166 79 67 chr11 17552879 17552923 -133230630 + MER44D DNA MER2_type 204 525 -84 338 250 42 0 chr11 17552923 17552995 -133230558 + Tigger3b DNA MER2_type 2 76 -1155 1391 179 6 79 chr11 17552995 17553313 -133230240 + AluJo SINE Alu 1 295 -17 5155 112 41 88 chr11 17553358 17553832 -133229721 + Tigger3b DNA MER2_type 286 692 -2336 1520 182 17 31 chr11 17553832 17554123 -133229430 + AluJo SINE Alu 1 287 -25 5155 112 41 88 chr11 17554123 17554640 -133228913 + Tigger3b DNA MER2_type 692 1231 0 545 121 0 44 chr11 17554640 17554730 -133228823 + MER44D DNA MER2_type 523 608 -1 1293 242 99 40 chr11 17554893 17555657 -133227896 + L2 LINE L2 2518 3309 -4 1452 134 119 22 chr11 17555972 17556240 -133227313 + AluJb SINE Alu 1 294 -18 277 363 7 20 chr11 17556240 17556386 -133227167 - L2 LINE L2 -1031 2283 2140 1109 131 12 0 chr11 17556544 17556712 -133226841 - L1MB7 LINE L1 -2 6182 6013 2302 105 0 10 chr11 17557235 17557539 -133226014 + AluSx SINE Alu 1 301 -11 1625 129 0 0 chr11 17558513 17558738 -133224815 + AluSx SINE Alu 2 226 -86 608 153 68 8 chr11 17558761 17558879 -133224674 - L1MB7 LINE L1 -69 6115 5991 630 103 0 0 chr11 17558933 17559020 -133224533 + AluSx SINE Alu 224 310 -2 826 252 75 34 chr11 17559113 17559163 -133224390 + L1MCa LINE L1 880 926 -5681 2284 97 7 0 chr11 17559163 17559451 -133224102 + AluSx SINE Alu 1 290 -22 826 252 75 34 chr11 17559451 17559476 -133224077 + L1MCa LINE L1 926 949 -5658 2205 88 24 14 chr11 17559476 17559770 -133223783 + AluSx SINE Alu 1 297 -15 826 252 75 34 chr11 17559770 17560188 -133223365 + L1MCa LINE L1 949 1594 -5013 1103 272 127 46 chr11 17560398 17560879 -133222674 + MER77 LTR ERV1 80 599 -6 226 274 16 48 chr11 17560885 17560947 -133222606 + MER21A LTR ERV1 682 741 -190 1474 188 3 45 chr11 17561030 17561339 -133222214 + AluJb SINE Alu 1 296 -16 2010 143 10 0 chr11 17561633 17561926 -133221627 - AluSx SINE Alu -16 296 1 1344 158 122 83 chr11 17562033 17562443 -133221110 + MSTC LTR MaLR 3 428 0 2364 90 0 0 chr11 17562745 17563045 -133220508 + AluSc SINE Alu 1 300 -9 986 62 0 7 chr11 17563045 17563189 -133220364 + (GGGGA)n Simple_repeat Simple_repeat 5 147 0 199 82 0 61 chr11 17563199 17563248 -133220305 + (GAAAA)n Simple_repeat Simple_repeat 2 47 0 353 289 54 60 chr11 17563822 17563957 -133219596 + MIR3 SINE MIR 42 177 -31 2183 120 3 0 chr11 17563957 17564258 -133219295 + AluSq SINE Alu 1 302 -11 353 289 54 60 chr11 17564258 17564288 -133219265 + MIR3 SINE MIR 177 206 -2 2225 115 0 0 chr11 17564464 17564759 -133218794 + AluSc SINE Alu 1 295 -14 1805 144 0 72 chr11 17564769 17565088 -133218465 + AluSx SINE Alu 1 296 -16 2315 103 0 0 chr11 17565090 17565400 -133218153 + AluY SINE Alu 1 310 -1 21 36 0 0 chr11 17565531 17565559 -133217994 + AT_rich Low_complexity Low_complexity 1 28 0 509 340 79 14 chr11 17565592 17565807 -133217746 - L2 LINE L2 -544 2770 2542 2354 53 0 33 chr11 17565911 17566210 -133217343 - AluY SINE Alu -21 290 2 485 151 0 0 chr11 17566350 17566423 -133217130 + AluS SINE Alu 2 74 -237 1589 122 9 0 chr11 17566423 17566652 -133216901 - AluJb SINE Alu -81 231 1 2225 100 0 7 chr11 17567445 17567744 -133215809 - AluSx SINE Alu -15 297 1 327 258 153 24 chr11 17567744 17567868 -133215685 + MIR SINE MIR 79 218 -44 799 261 0 0 chr11 17567981 17568134 -133215419 + FAM SINE Alu 2 154 -31 183 42 0 0 chr11 17568136 17568160 -133215393 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2196 125 0 0 chr11 17568171 17568468 -133215085 + AluSx SINE Alu 3 299 -13 2886 163 73 16 chr11 17568481 17568993 -133214560 + L1MB4 LINE L1 5373 5971 -209 1885 92 138 0 chr11 17568993 17569254 -133214299 + AluSc SINE Alu 1 297 -12 2886 163 73 16 chr11 17569254 17569343 -133214210 + L1MB4 LINE L1 5971 6053 -127 1349 92 0 0 chr11 17569355 17569528 -133214025 + AluSg/x SINE Alu 119 291 -19 323 141 22 133 chr11 17569635 17569770 -133213783 + L1MD3 LINE L1 7876 7995 0 1454 155 0 106 chr11 17569781 17570130 -133213423 + L1ME1 LINE L1 5849 6160 -6 2230 117 0 0 chr11 17570252 17570552 -133213001 + AluSx SINE Alu 1 300 -12 2389 104 0 0 chr11 17570575 17570883 -133212670 + AluSc SINE Alu 1 308 -1 2334 100 0 3 chr11 17571294 17571604 -133211949 + AluSx SINE Alu 1 309 -3 1558 189 46 0 chr11 17571630 17571910 -133211643 + AluJb SINE Alu 5 297 -15 196 287 161 34 chr11 17571911 17572037 -133211516 + MIR SINE MIR 23 170 -84 964 118 0 15 chr11 17572532 17572667 -133210886 + FLAM_C SINE Alu 1 133 0 801 97 19 0 chr11 17573008 17573111 -133210442 - AluJo/FRAM SINE Alu -21 291 187 2490 60 0 7 chr11 17573112 17573413 -133210140 + AluY SINE Alu 1 299 -12 237 313 16 0 chr11 17573414 17573478 -133210075 - AluJ/FLAM SINE Alu -237 65 1 693 210 34 0 chr11 17573478 17573624 -133209929 + MER33 DNA MER1_type 1 144 -100 259 294 64 18 chr11 17573701 17573810 -133209743 - MIR SINE MIR -75 133 19 2177 113 10 0 chr11 17574217 17574510 -133209043 + AluSx SINE Alu 1 296 -16 2297 93 0 16 chr11 17574511 17574824 -133208729 + AluSc SINE Alu 1 308 -1 1949 122 31 7 chr11 17575161 17575448 -133208105 + AluSx SINE Alu 2 295 -17 298 135 0 0 chr11 17575874 17575926 -133207627 + Alu SINE Alu 251 302 0 25 31 0 0 chr11 17576822 17576854 -133206699 + GC_rich Low_complexity Low_complexity 1 32 0 240 149 21 0 chr11 17578102 17578149 -133205404 - MIR SINE MIR -112 150 103 565 151 17 8 chr11 17578890 17579009 -133204544 + CT-rich Low_complexity Low_complexity 3 122 0 2216 92 0 3 chr11 17579473 17579756 -133203797 - AluSp SINE Alu -11 302 21 807 238 34 21 chr11 17579898 17580147 -133203406 - MIR SINE MIR -10 252 1 1815 150 59 3 chr11 17580279 17580566 -133202987 - AluSx SINE Alu -5 307 5 495 298 93 36 chr11 17580631 17580839 -133202714 - L2 LINE L2 -215 3057 2862 809 152 8 0 chr11 17580839 17580964 -133202589 - FLAM_C SINE Alu -7 126 1 495 298 93 36 chr11 17580964 17581211 -133202342 - L2 LINE L2 -410 2862 2582 2230 96 3 0 chr11 17581233 17581515 -133202038 + AluSq SINE Alu 12 294 -19 1685 180 86 138 chr11 17581683 17582255 -133201298 - MLT1F1 LTR MaLR 0 567 1 271 289 13 0 chr11 17582318 17582394 -133201159 - L2 LINE L2 -298 2974 2898 672 240 88 59 chr11 17582541 17582587 -133200966 + L1MC4a LINE L1 5670 5713 -408 1815 142 16 128 chr11 17582587 17582708 -133200845 - MLT1B LTR MaLR 0 390 257 2151 123 7 0 chr11 17582708 17583008 -133200545 - AluSx SINE Alu -10 302 1 1815 142 16 128 chr11 17583008 17583322 -133200231 - MLT1B LTR MaLR -133 257 4 1593 256 47 14 chr11 17583322 17583751 -133199802 - LTR47B LTR ERVL 0 443 1 672 240 88 59 chr11 17583751 17584179 -133199374 + L1MC4a LINE L1 5712 5896 -225 803 41 0 0 chr11 17584183 17584280 -133199273 + L1PA8 LINE L1 6073 6169 -3 2363 65 17 3 chr11 17584367 17584657 -133198896 + AluSg SINE Alu 1 294 -16 356 264 11 11 chr11 17584663 17584750 -133198803 + Tigger2 DNA MER2_type 2622 2708 -10 1616 273 133 46 chr11 17584911 17585305 -133198248 + L2 LINE L2 1711 2069 -1245 2208 107 0 7 chr11 17585305 17585603 -133197950 - AluSx SINE Alu -16 296 1 1616 273 133 46 chr11 17585603 17586101 -133197452 + L2 LINE L2 2069 2681 -633 1872 139 0 4 chr11 17586138 17586411 -133197142 + AluJo SINE Alu 11 282 -30 1236 193 23 26 chr11 17586464 17586728 -133196825 + AluJo SINE Alu 42 304 -8 1091 266 97 30 chr11 17586730 17587288 -133196265 + L2 LINE L2 2708 3313 0 1900 181 0 0 chr11 17587377 17587676 -133195877 - AluJb SINE Alu -13 299 1 805 212 164 9 chr11 17587998 17588039 -133195514 - MIR SINE MIR 0 262 229 1993 141 0 3 chr11 17588039 17588381 -133195172 - AluJb SINE Alu 0 341 1 805 212 164 9 chr11 17588381 17588564 -133194989 - MIR SINE MIR -33 229 2 2052 184 56 37 chr11 17588697 17588998 -133194555 - Charlie4a DNA MER1_type -1453 508 193 2312 106 0 3 chr11 17588998 17589299 -133194254 + AluSx SINE Alu 1 300 -12 2052 184 56 37 chr11 17589299 17589480 -133194073 - Charlie4a DNA MER1_type -1768 193 17 2086 110 6 25 chr11 17589701 17590018 -133193535 + AluSq SINE Alu 1 311 -2 614 256 0 35 chr11 17590542 17590714 -133192839 - MIR SINE MIR 0 262 97 2163 122 0 7 chr11 17590870 17591173 -133192380 - AluSx SINE Alu -11 301 1 362 163 47 108 chr11 17591192 17591321 -133192232 - MLT1J1 LTR MaLR 0 446 326 515 236 65 0 chr11 17591407 17591530 -133192023 - MLT1J2 LTR MaLR -317 133 3 2589 54 0 0 chr11 17592571 17592868 -133190685 + AluY SINE Alu 1 297 -14 1360 108 0 0 chr11 17593289 17593465 -133190088 - AluSc SINE Alu -2 307 132 2236 100 0 50 chr11 17593465 17593784 -133189769 - AluSg SINE Alu -7 303 1 2468 77 3 0 chr11 17593784 17594080 -133189473 - AluSp SINE Alu -15 298 1 196 274 20 0 chr11 17594423 17594474 -133189079 + L2 LINE L2 3139 3190 -82 477 213 14 78 chr11 17594476 17594527 -133189026 - FLAM_A SINE Alu -170 132 79 2188 123 3 0 chr11 17594527 17594827 -133188726 - AluSg SINE Alu -9 301 1 477 213 14 78 chr11 17594827 17594916 -133188637 - FLAM_A SINE Alu -223 79 1 2291 112 0 0 chr11 17595503 17595807 -133187746 + AluSg SINE Alu 1 304 -6 458 239 103 0 chr11 17595926 17596063 -133187490 - FLAM_C SINE Alu 0 133 2 1336 226 0 3 chr11 17596073 17596360 -133187193 - AluSx SINE Alu -14 298 13 2984 162 26 32 chr11 17596460 17596484 -133187069 - L1MB7 LINE L1 -54 6130 6107 1904 173 0 3 chr11 17596484 17596797 -133186756 - AluSx SINE Alu 0 312 1 2984 162 26 32 chr11 17596797 17597359 -133186194 - L1MB7 LINE L1 -77 6107 5548 2515 82 0 0 chr11 17597453 17597758 -133185795 - AluSq SINE Alu -8 305 1 2006 100 4 7 chr11 17597758 17598027 -133185526 - AluSx SINE Alu -7 305 38 1907 121 11 4 chr11 17598131 17598404 -133185149 + AluSx SINE Alu 21 295 -17 26 0 0 0 chr11 17598460 17598486 -133185067 + AT_rich Low_complexity Low_complexity 1 26 0 2115 128 10 0 chr11 17598572 17598877 -133184676 + AluSx SINE Alu 1 308 -4 207 0 0 0 chr11 17599052 17599075 -133184478 + (A)n Simple_repeat Simple_repeat 1 23 0 1842 145 43 0 chr11 17599158 17599440 -133184113 + AluJo SINE Alu 3 296 -16 2345 95 0 0 chr11 17599522 17599817 -133183736 + AluSg SINE Alu 1 295 -15 1039 211 0 0 chr11 17599831 17600006 -133183547 - FAM SINE Alu 0 175 1 1059 255 52 30 chr11 17600526 17600855 -133182698 + MER102b DNA MER1_type 1 336 -5 2907 126 73 42 chr11 17601076 17601138 -133182415 + MER34 LTR ERV1 1 60 -482 261 0 0 0 chr11 17601138 17601167 -133182386 + (TA)n Simple_repeat Simple_repeat 1 29 0 2208 124 0 3 chr11 17601167 17601473 -133182080 - AluSg SINE Alu -5 305 1 2907 126 73 42 chr11 17601473 17601931 -133181622 + MER34 LTR ERV1 59 538 -4 736 200 0 0 chr11 17602081 17602211 -133181342 + FLAM_C SINE Alu 2 131 -12 2282 120 0 0 chr11 17602509 17602818 -133180735 + AluSg SINE Alu 1 309 -1 1539 190 50 0 chr11 17603110 17603389 -133180164 - AluJb SINE Alu -15 297 5 2332 97 3 3 chr11 17603415 17603723 -133179830 - AluSx SINE Alu -4 308 1 2392 107 0 0 chr11 17604141 17604450 -133179103 - AluSc SINE Alu 0 309 1 2244 117 0 0 chr11 17604473 17604773 -133178780 - AluSx SINE Alu -12 300 1 1439 155 0 106 chr11 17604895 17605244 -133178309 - L1ME1 LINE L1 -6 6160 5849 310 141 22 133 chr11 17605257 17605392 -133178161 - L1MD3 LINE L1 0 7995 7876 1394 86 0 0 chr11 17605499 17605673 -133177880 - AluSg/x SINE Alu -18 292 119 2825 162 73 18 chr11 17605685 17605774 -133177779 - L1MB4 LINE L1 -127 6053 5970 1807 92 146 0 chr11 17605774 17606034 -133177519 - AluSc SINE Alu -11 298 1 2825 162 73 18 chr11 17606034 17606547 -133177006 - L1MB4 LINE L1 -210 5970 5373 2209 125 0 0 chr11 17606560 17606857 -133176696 - AluSx SINE Alu -13 299 3 183 42 0 0 chr11 17606870 17606894 -133176659 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 741 255 0 0 chr11 17606896 17607045 -133176508 - FAM SINE Alu -31 154 6 294 266 153 24 chr11 17607162 17607286 -133176267 - MIR SINE MIR -44 218 79 2271 101 0 3 chr11 17607286 17607583 -133175970 + AluSx SINE Alu 1 296 -16 1518 123 18 0 chr11 17608376 17608603 -133174950 + AluJb SINE Alu 1 231 -81 455 151 0 0 chr11 17608603 17608676 -133174877 - AluS SINE Alu -236 74 2 2348 50 3 34 chr11 17608816 17609114 -133174439 + AluY SINE Alu 2 290 -21 446 349 79 14 chr11 17609218 17609433 -133174120 + L2 LINE L2 2542 2770 -544 21 36 0 0 chr11 17609466 17609494 -133174059 + AT_rich Low_complexity Low_complexity 1 28 0 2342 99 0 0 chr11 17609625 17609929 -133173624 - AluY SINE Alu -1 310 7 1831 142 0 72 chr11 17609937 17610255 -133173298 - AluSx SINE Alu -17 295 1 2302 92 3 0 chr11 17610265 17610560 -133172993 - AluSg SINE Alu -14 296 1 477 213 14 78 chr11 17611147 17611236 -133172317 + FLAM_A SINE Alu 1 79 -223 2188 123 3 0 chr11 17611236 17611536 -133172017 + AluSg SINE Alu 1 301 -9 477 213 14 78 chr11 17611536 17611587 -133171966 + FLAM_A SINE Alu 79 132 -170 196 274 20 0 chr11 17611589 17611640 -133171913 - L2 LINE L2 -82 3190 3139 2461 77 3 0 chr11 17611983 17612281 -133171272 + AluSp SINE Alu 1 299 -14 1866 112 18 35 chr11 17612281 17612566 -133170987 + AluSg SINE Alu 1 281 -29 2367 108 0 0 chr11 17612789 17613096 -133170457 - AluSx SINE Alu -3 309 3 2377 95 0 7 chr11 17613380 17613684 -133169869 - AluSg SINE Alu -8 302 1 334 295 33 33 chr11 17613738 17613860 -133169693 + MIR SINE MIR 65 186 -76 354 256 172 0 chr11 17613926 17614056 -133169497 - MIR SINE MIR -45 163 13 2046 114 6 25 chr11 17614318 17614633 -133168920 + AluSx SINE Alu 1 309 -3 916 212 72 13 chr11 17614698 17614934 -133168619 + MIR SINE MIR 3 252 -10 1827 96 0 0 chr11 17615596 17615826 -133167727 + AluSg/x SINE Alu 81 310 0 265 266 114 0 chr11 17615954 17616033 -133167520 + MIR SINE MIR 33 120 -88 3419 35 0 0 chr11 17616191 17616593 -133166960 - L1PA4 LINE L1 -2 6153 5752 342 62 0 21 chr11 17616593 17616630 -133166923 + L1PA4 LINE L1 5705 5742 -413 2053 128 10 13 chr11 17617294 17617607 -133165946 - AluSx SINE Alu 0 312 1 1166 145 0 11 chr11 17617940 17618119 -133165434 - FRAM SINE Alu -1 175 1 592 258 0 15 chr11 17618475 17618607 -133164946 + FRAM SINE Alu 1 130 -46 670 147 0 53 chr11 17618610 17618800 -133164753 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 356 172 224 82 chr11 17618854 17618916 -133164637 + MER5A DNA MER1_type 9 61 -128 2264 114 0 0 chr11 17618916 17619214 -133164339 + AluSx SINE Alu 1 298 -14 356 172 224 82 chr11 17619214 17619285 -133164268 + MER5A DNA MER1_type 61 161 -28 2088 132 9 107 chr11 17619298 17619470 -133164083 - MLT1B LTR MaLR 0 390 203 2082 146 0 3 chr11 17619470 17619778 -133163775 - AluJb SINE Alu 0 312 6 2088 132 9 107 chr11 17619778 17620037 -133163516 - MLT1B LTR MaLR -187 203 1 2090 133 7 0 chr11 17620493 17620801 -133162752 - AluSx SINE Alu -2 310 1 562 269 94 0 chr11 17620836 17620996 -133162557 - MIR SINE MIR -84 178 4 201 239 0 0 chr11 17621113 17621159 -133162394 + (CAT)n Simple_repeat Simple_repeat 3 48 0 2235 109 0 0 chr11 17621540 17621864 -133161689 + AluSx SINE Alu 1 324 0 2003 125 17 3 chr11 17622048 17622344 -133161209 - AluSx SINE Alu -12 300 1 689 180 96 71 chr11 17622362 17622568 -133160985 + L1MC5 LINE L1 7695 7909 -52 2219 111 0 7 chr11 17622568 17622874 -133160679 - AluY SINE Alu -7 304 1 689 180 96 71 chr11 17622874 17622906 -133160647 + L1MC5 LINE L1 7909 7939 -22 1102 199 89 35 chr11 17622986 17623268 -133160285 + MER63B DNA MER1_type 4 300 -136 1896 166 0 0 chr11 17623269 17623564 -133159989 - AluJb SINE Alu -17 295 1 1782 151 0 46 chr11 17623578 17623903 -133159650 - AluJo SINE Alu -2 310 1 616 231 113 95 chr11 17624502 17624599 -133158954 + L1ME4a LINE L1 5578 5672 -449 2315 111 0 10 chr11 17624599 17624906 -133158647 + AluSx SINE Alu 1 304 -8 1808 105 84 11 chr11 17624911 17625196 -133158357 + AluSg SINE Alu 1 306 -4 616 231 113 95 chr11 17625196 17625409 -133158144 + L1ME4a LINE L1 5675 5883 -238 1744 189 0 14 chr11 17625409 17625706 -133157847 + AluJo SINE Alu 1 293 -19 1961 117 71 0 chr11 17625709 17625992 -133157561 + AluSx SINE Alu 1 303 -9 616 231 113 95 chr11 17625992 17626030 -133157523 + L1ME4a LINE L1 5884 5920 -201 213 39 0 0 chr11 17626030 17626056 -133157497 + (CA)n Simple_repeat Simple_repeat 2 27 0 616 231 113 95 chr11 17626056 17626201 -133157352 + L1ME4a LINE L1 5920 6092 -29 782 239 163 45 chr11 17626432 17626627 -133156926 + HAL1 LINE L1 1819 1990 -517 2342 112 0 3 chr11 17626627 17626941 -133156612 + AluSq SINE Alu 1 313 0 782 239 163 45 chr11 17626941 17627193 -133156360 + HAL1 LINE L1 1990 2319 -188 428 123 0 0 chr11 17627197 17627254 -133156299 + AluS SINE Alu 2 58 -260 1247 173 0 0 chr11 17627254 17627451 -133156102 + AluSg/x SINE Alu 102 298 -12 2076 133 0 0 chr11 17627453 17627739 -133155814 + AluSx SINE Alu 1 286 -26 496 230 73 54 chr11 17627750 17627954 -133155599 + HAL1 LINE L1 2300 2507 0 4983 124 12 20 chr11 17627958 17628710 -133154843 + L1MB3 LINE L1 5427 6172 -11 2276 103 7 3 chr11 17628711 17629011 -133154542 - AluSx SINE Alu -11 301 1 210 164 18 36 chr11 17629262 17629317 -133154236 + T-rich Low_complexity Low_complexity 2 55 0 1689 176 7 3 chr11 17629384 17629679 -133153874 + AluJb SINE Alu 1 296 -16 1273 169 20 24 chr11 17629696 17629950 -133153603 + AluJo SINE Alu 29 281 -31 2302 98 3 7 chr11 17630093 17630398 -133153155 - AluSx SINE Alu -8 304 1 235 273 36 0 chr11 17631392 17631447 -133152106 + L2 LINE L2 3200 3256 -16 363 280 76 0 chr11 17631537 17631655 -133151898 + L2 LINE L2 3185 3311 -2 2153 107 3 3 chr11 17631717 17632017 -133151536 + AluSx SINE Alu 1 300 -12 311 196 0 0 chr11 17632027 17632073 -133151480 + Alu SINE Alu 2 47 -252 545 161 0 0 chr11 17632073 17632160 -133151393 + AluJ/FRAM SINE Alu 226 312 0 1222 426 3 0 chr11 17632280 17632583 -133150970 - AluSg SINE Alu -6 304 1 2459 74 0 3 chr11 17632695 17632994 -133150559 + AluSp SINE Alu 2 299 -14 711 305 154 33 chr11 17633011 17633166 -133150387 - L2 LINE L2 0 3313 3178 297 0 0 0 chr11 17633166 17633199 -133150354 + (CA)n Simple_repeat Simple_repeat 2 34 0 711 305 154 33 chr11 17633199 17633545 -133150008 - L2 LINE L2 -135 3178 2875 2548 78 0 0 chr11 17633545 17633851 -133149702 - AluSg SINE Alu -3 307 2 711 305 154 33 chr11 17633851 17634179 -133149374 - L2 LINE L2 -438 2875 2386 631 312 78 53 chr11 17634179 17634615 -133148938 - LTR16A LTR ERVL -3 447 1 2222 86 4 4 chr11 17634669 17634949 -133148604 + AluSx SINE Alu 1 280 -32 262 268 106 56 chr11 17635032 17635174 -133148379 - L2 LINE L2 -996 2318 2170 494 266 9 60 chr11 17635207 17635370 -133148183 + MER20B DNA MER1_type 43 201 -18 851 279 83 56 chr11 17635396 17635654 -133147899 - L2 LINE L2 -1157 2157 1907 1255 223 13 66 chr11 17635654 17635972 -133147581 + AluJo SINE Alu 2 302 0 851 279 83 56 chr11 17635972 17635996 -133147557 - L2 LINE L2 -1407 1907 1885 2298 92 0 0 chr11 17635996 17636289 -133147264 + AluSg1 SINE Alu 1 293 -16 851 279 83 56 chr11 17636289 17636450 -133147103 - L2 LINE L2 -1429 1885 1701 326 274 154 34 chr11 17636585 17636819 -133146734 - L2 LINE L2 -1611 1703 1442 274 283 129 92 chr11 17636824 17637064 -133146489 + MLT1L LTR MaLR 3 251 -364 1472 114 10 0 chr11 17637243 17637444 -133146109 - AluSq SINE Alu -110 203 1 1017 174 23 55 chr11 17637453 17637672 -133145881 - AluJo SINE Alu -6 306 95 847 189 7 34 chr11 17637674 17637822 -133145731 - AluJo SINE Alu -167 145 2 2367 71 3 3 chr11 17637998 17638292 -133145261 - AluY SINE Alu -6 305 12 226 283 0 17 chr11 17638295 17638355 -133145198 + MER5A DNA MER1_type 128 186 -3 671 170 123 137 chr11 17638455 17638667 -133144886 - MER58A DNA MER1_type -15 209 1 198 0 0 0 chr11 17638684 17638706 -133144847 + (CAA)n Simple_repeat Simple_repeat 2 23 0 2024 115 54 0 chr11 17638792 17639071 -133144482 - AluSg SINE Alu -16 294 1 279 0 0 0 chr11 17639532 17639563 -133143990 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2250 110 0 16 chr11 17639575 17639893 -133143660 - AluSq SINE Alu 0 313 1 234 202 202 12 chr11 17639897 17639981 -133143572 - MIR SINE MIR -46 216 117 797 275 47 17 chr11 17639995 17640231 -133143322 - MIR SINE MIR -11 251 9 2145 124 3 7 chr11 17640461 17640783 -133142770 - AluSx SINE Alu 0 321 1 2404 92 0 13 chr11 17641100 17641415 -133142138 - AluSx SINE Alu -1 311 1 4984 95 6 6 chr11 17641435 17642100 -133141453 - L1PB2 LINE L1 -3 6148 5481 2129 128 7 0 chr11 17642100 17642405 -133141148 - AluSx SINE Alu -5 307 1 1272 142 7 55 chr11 17642411 17642481 -133141072 - L1PB2 LINE L1 -1328 4818 4746 2521 71 0 0 chr11 17642481 17642778 -133140775 - AluSq SINE Alu -15 298 2 1272 142 7 55 chr11 17642778 17642981 -133140572 - L1PB2 LINE L1 -1400 4746 4558 2342 254 78 19 chr11 17643000 17643694 -133139859 - L1PBa LINE L1 -6002 861 127 911 144 8 0 chr11 17643737 17643862 -133139691 + FLAM_C SINE Alu 1 126 -7 997 154 0 35 chr11 17643986 17644130 -133139423 - 7SLRNA srpRNA srpRNA -23 297 158 2869 164 29 35 chr11 17644130 17644399 -133139154 + MER66B LTR ERV1 1 267 -219 2097 152 3 0 chr11 17644399 17644709 -133138844 + AluSx SINE Alu 1 311 -1 2869 164 29 35 chr11 17644709 17644928 -133138625 + MER66B LTR ERV1 267 486 0 997 154 0 35 chr11 17644928 17644952 -133138601 - 7SLRNA srpRNA srpRNA -162 158 135 284 130 0 0 chr11 17644953 17645007 -133138546 - AluSp/q SINE Alu -1 302 249 1692 174 24 10 chr11 17645096 17645390 -133138163 + AluJb SINE Alu 1 298 -14 253 157 0 78 chr11 17645393 17645444 -133138109 + MIR SINE MIR 31 77 -131 452 281 148 10 chr11 17645450 17645646 -133137907 - MIR SINE MIR -3 259 37 917 173 59 170 chr11 17645713 17646054 -133137499 - AluSx SINE Alu -9 303 1 226 227 144 41 chr11 17646055 17646152 -133137401 - MIR SINE MIR -40 222 116 345 135 0 14 chr11 17646201 17646269 -133137284 + MIR3 SINE MIR 96 161 -47 201 147 0 0 chr11 17647613 17647647 -133135906 + (GA)n Simple_repeat Simple_repeat 1 34 0 2358 92 0 3 chr11 17648295 17648599 -133134954 - AluSx SINE Alu -7 305 3 2307 100 3 0 chr11 17649035 17649334 -133134219 + AluSq SINE Alu 1 300 -13 191 268 175 21 chr11 17649459 17649556 -133133997 + MIR3 SINE MIR 49 160 -48 753 171 353 0 chr11 17649558 17649745 -133133808 - Tigger7 DNA MER2_type 0 2487 2235 371 172 0 0 chr11 17649740 17649798 -133133755 - Tigger7 DNA MER2_type -281 58 1 * 2085 129 0 23 chr11 17649904 17650214 -133133339 - AluJo SINE Alu -9 303 1 1842 176 0 3 chr11 17650879 17651186 -133132367 + AluJb SINE Alu 1 306 -6 1788 159 43 10 chr11 17651239 17651541 -133132012 - AluJb SINE Alu 0 312 1 390 282 101 20 chr11 17651630 17651779 -133131774 - MIR SINE MIR -7 255 95 336 64 0 0 chr11 17652332 17652379 -133131174 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 2083 142 0 7 chr11 17652380 17652682 -133130871 - AluSx SINE Alu -12 300 1 29 0 0 0 chr11 17652874 17652903 -133130650 + AT_rich Low_complexity Low_complexity 1 29 0 352 219 112 4 chr11 17652935 17653057 -133130496 + MIR SINE MIR 20 164 -58 590 254 76 68 chr11 17653140 17653557 -133129996 - MLT1J LTR MaLR -36 475 3 192 217 0 22 chr11 17653832 17653878 -133129675 - MIR SINE MIR 0 262 218 1981 125 38 0 chr11 17654152 17654439 -133129114 - AluSx SINE Alu -14 298 1 362 314 74 41 chr11 17654992 17655113 -133128440 + L2 LINE L2 3136 3260 -12 216 0 0 0 chr11 17655141 17655165 -133128388 + (CATA)n Simple_repeat Simple_repeat 2 25 0 2533 47 0 50 chr11 17655268 17655415 -133128138 + AluY SINE Alu 1 125 -186 2298 83 0 17 chr11 17655415 17655717 -133127836 + AluSc SINE Alu 1 297 -12 2533 47 0 50 chr11 17655717 17655889 -133127664 + AluY SINE Alu 125 304 -7 297 0 0 0 chr11 17656057 17656090 -133127463 + (CA)n Simple_repeat Simple_repeat 2 34 0 1839 156 0 10 chr11 17656163 17656458 -133127095 - AluJb SINE Alu -19 293 2 1081 189 9 32 chr11 17657250 17657467 -133126086 + AluJb SINE Alu 84 295 -17 2187 135 0 3 chr11 17657512 17657815 -133125738 + AluSx SINE Alu 1 302 -10 2155 124 7 0 chr11 17657840 17658139 -133125414 + AluSx SINE Alu 1 301 -11 908 248 105 6 chr11 17658151 17658465 -133125088 + HsTC2 DNA Tc2 1536 1880 -18 830 189 0 0 chr11 17658482 17658614 -133124939 - FRAM SINE Alu -44 132 1 2159 118 6 19 chr11 17658649 17658986 -133124567 - AluSx SINE Alu 0 333 1 729 0 0 0 chr11 17659012 17659093 -133124460 + (CA)n Simple_repeat Simple_repeat 2 82 0 2151 124 3 3 chr11 17659101 17659399 -133124154 - AluSx SINE Alu -14 298 1 3879 231 120 24 chr11 17659418 17660567 -133122986 - HsTC2 DNA Tc2 -569 1329 71 894 181 0 0 chr11 17660568 17660701 -133122852 + FLAM_C SINE Alu 1 133 0 384 303 128 0 chr11 17660731 17660919 -133122634 + L1M4 LINE L1 2399 2610 -3536 1517 179 3 20 chr11 17661050 17661346 -133122207 - L1MB7 LINE L1 -19 6165 5875 2403 100 3 0 chr11 17661406 17661717 -133121836 + AluSx SINE Alu 1 312 0 322 326 10 3 chr11 17662323 17662430 -133121123 - MIR SINE MIR -67 141 36 1146 180 11 16 chr11 17662592 17662781 -133120772 - MER5A DNA MER1_type 0 189 2 643 276 89 22 chr11 17662792 17663017 -133120536 + MIR SINE MIR 23 262 0 2389 97 0 0 chr11 17663129 17663429 -133120124 + AluSx SINE Alu 1 300 -12 3744 166 25 5 chr11 17663547 17664217 -133119336 + L1MB7 LINE L1 5485 6168 -16 474 275 105 53 chr11 17664377 17664548 -133119005 - MER5A DNA MER1_type -1 188 9 321 102 85 0 chr11 17664575 17664634 -133118919 + L1MB8 LINE L1 6115 6178 0 198 0 0 0 chr11 17664835 17664857 -133118696 + (A)n Simple_repeat Simple_repeat 1 22 0 2116 99 3 3 chr11 17664921 17665227 -133118326 + AluSp SINE Alu 1 306 0 184 243 0 19 chr11 17665625 17665728 -133117825 + (AAATG)n Simple_repeat Simple_repeat 5 105 0 800 195 0 0 chr11 17666414 17666537 -133117016 - FLAM_A SINE Alu -10 123 1 235 341 102 0 chr11 17666539 17666627 -133116926 - L2 LINE L2 -15 3298 3202 203 353 108 30 chr11 17666810 17667042 -133116511 - L2 LINE L2 -340 2974 2725 2390 94 0 0 chr11 17667959 17668257 -133115296 + AluSg SINE Alu 3 300 -10 677 184 80 0 chr11 17668262 17668387 -133115166 + AluJo SINE Alu 2 136 -176 23 0 0 0 chr11 17668387 17668410 -133115143 + AT_rich Low_complexity Low_complexity 1 23 0 1753 181 0 20 chr11 17668438 17668742 -133114811 + AluJo SINE Alu 1 298 -14 2132 145 0 0 chr11 17668843 17669153 -133114400 - AluSx SINE Alu -2 310 1 221 330 0 75 chr11 17669246 17669352 -133114201 + L2 LINE L2 1858 1955 -1359 547 214 137 0 chr11 17669384 17669515 -133114038 - MER5A DNA MER1_type -40 149 1 1344 126 0 0 chr11 17669776 17669951 -133113602 + AluJo SINE Alu 1 175 -137 22 35 0 0 chr11 17670080 17670109 -133113444 + AT_rich Low_complexity Low_complexity 1 29 0 1696 178 34 10 chr11 17670367 17670665 -133112888 - AluJo SINE Alu -7 305 1 1314 160 0 73 chr11 17671024 17671211 -133112342 - AluJo SINE Alu -1 311 149 2586 50 3 0 chr11 17671211 17671510 -133112043 - AluY SINE Alu -11 300 1 1314 160 0 73 chr11 17671510 17671597 -133111956 - AluJo SINE Alu -163 149 57 236 266 38 13 chr11 17671675 17671754 -133111799 + L1M4 LINE L1 3546 3626 -2520 277 318 18 0 chr11 17671801 17671911 -133111642 + L1M4 LINE L1 3776 3887 -2259 2325 106 3 0 chr11 17672076 17672379 -133111174 + AluSx SINE Alu 2 305 -7 675 286 45 118 chr11 17672384 17672669 -133110884 + L1M4 LINE L1 3885 4189 -1957 2009 126 3 7 chr11 17672669 17672962 -133110591 - AluSx SINE Alu -17 295 4 675 286 45 118 chr11 17672962 17673513 -133110040 + L1M4 LINE L1 4189 4779 -1367 2290 121 0 0 chr11 17673513 17673818 -133109735 + AluSx SINE Alu 1 305 -7 675 286 45 118 chr11 17673818 17674080 -133109473 + L1M4 LINE L1 4779 4881 -1265 1721 176 3 19 chr11 17674080 17674393 -133109160 - AluJo SINE Alu 0 312 5 675 286 45 118 chr11 17674393 17674559 -133108994 + L1M4 LINE L1 4881 5058 -1088 329 217 0 0 chr11 17674613 17674673 -133108880 - L1MC4 LINE L1 -1061 6981 6922 497 264 64 8 chr11 17674735 17674860 -133108693 - MER5A DNA MER1_type -1 188 57 2237 103 20 3 chr11 17675106 17675408 -133108145 + AluSx SINE Alu 1 307 -5 887 143 0 15 chr11 17675542 17675675 -133107878 - FLAM_C SINE Alu -2 131 1 732 157 0 50 chr11 17675809 17675930 -133107623 - FLAM_C SINE Alu -17 116 2 1873 242 121 25 chr11 17675930 17676547 -133107006 - L1MC4 LINE L1 -351 5815 5319 1530 263 24 13 chr11 17676607 17677064 -133106489 - L1MC4 LINE L1 -1127 6915 6454 1920 157 0 23 chr11 17677503 17677802 -133105751 + AluJb SINE Alu 1 292 -20 895 201 211 4 chr11 17678310 17678589 -133104964 + MER46C DNA MER2_type 1 337 -1 2066 107 10 32 chr11 17678827 17679135 -133104418 + AluSq SINE Alu 2 302 -11 1075 151 9 65 chr11 17680702 17680877 -133102676 - AluJo SINE Alu -8 304 121 2193 90 3 40 chr11 17680877 17681177 -133102376 - AluSx SINE Alu -14 298 10 2257 103 0 13 chr11 17681180 17681482 -133102071 - AluSx SINE Alu -14 298 1 1075 151 9 65 chr11 17681482 17681534 -133102019 - AluJo SINE Alu -193 119 86 301 148 19 0 chr11 17681535 17681589 -133101964 - AluJo SINE Alu -162 140 86 2023 140 3 0 chr11 17681719 17682004 -133101549 + AluSx SINE Alu 1 286 -26 1778 288 172 21 chr11 17682115 17683073 -133100480 + L2 LINE L2 1927 3029 -284 2315 89 0 7 chr11 17684419 17684740 -133098813 - AluSg1 SINE Alu 0 309 1 596 294 43 48 chr11 17684770 17685168 -133098385 - L1ME4a LINE L1 -207 5914 5519 25 31 0 0 chr11 17685252 17685284 -133098269 + AT_rich Low_complexity Low_complexity 1 32 0 446 259 18 9 chr11 17685305 17685417 -133098136 + MER81 DNA DNA 2 114 0 364 177 175 3 chr11 17685571 17685688 -133097865 - L1MC4 LINE L1 -5 8037 7901 188 111 28 0 chr11 17685747 17685783 -133097770 + (TATATG)n Simple_repeat Simple_repeat 3 39 0 807 245 131 0 chr11 17685793 17686075 -133097478 - L1MC4 LINE L1 -124 7918 7600 699 184 86 6 chr11 17686111 17686274 -133097279 - L1MC4a LINE L1 -424 7384 7209 669 143 103 24 chr11 17686307 17686433 -133097120 - FLAM_C SINE Alu -5 138 3 1719 144 0 97 chr11 17686445 17686785 -133096768 - AluSx SINE Alu -3 309 3 253 292 45 39 chr11 17686879 17687057 -133096496 - L1ME LINE L1 -348 5773 5595 916 206 30 0 chr11 17687062 17687261 -133096292 + L1MC4 LINE L1 6870 7074 -968 790 159 48 0 chr11 17687366 17687492 -133096061 + FLAM_A SINE Alu 1 132 -1 6683 161 34 71 chr11 17687538 17688190 -133095363 - L1MA2 LINE L1 -10 6294 5619 3075 93 4 33 chr11 17688190 17688674 -133094879 - L1PA13 LINE L1 -4 6159 5690 6683 161 34 71 chr11 17688674 17688859 -133094694 - L1MA2 LINE L1 -685 5619 5429 2028 113 50 0 chr11 17688859 17689141 -133094412 + AluSx SINE Alu 1 296 -16 6683 161 34 71 chr11 17689141 17690609 -133092944 - L1MA2 LINE L1 -875 5429 5108 199 319 128 31 chr11 17690898 17691218 -133092335 - L3 LINE CR1 -77 1500 1150 524 316 52 5 chr11 17691693 17691905 -133091648 + MIR SINE MIR 13 234 -28 412 17 17 17 chr11 17691921 17691979 -133091574 + (CA)n Simple_repeat Simple_repeat 2 59 0 1074 145 12 6 chr11 17692039 17692205 -133091348 - AluJo/FRAM SINE Alu -12 300 134 2154 111 3 7 chr11 17692205 17692503 -133091050 - AluSx SINE Alu -12 300 4 411 302 26 81 chr11 17692504 17693054 -133090499 + L1M4 LINE L1 4131 4709 -1437 2300 121 0 0 chr11 17693054 17693359 -133090194 + AluSx SINE Alu 1 305 -7 411 302 26 81 chr11 17693359 17693621 -133089932 + L1M4 LINE L1 4709 4886 -1260 1753 176 3 19 chr11 17693621 17693934 -133089619 - AluJo SINE Alu 0 312 5 411 302 26 81 chr11 17693934 17694076 -133089477 + L1M4 LINE L1 4886 5034 -1112 305 217 0 0 chr11 17694154 17694214 -133089339 - L1MC4 LINE L1 -1061 6981 6922 509 264 64 8 chr11 17694276 17694401 -133089152 - MER5A DNA MER1_type -1 188 57 2239 103 20 3 chr11 17694647 17694949 -133088604 + AluSx SINE Alu 1 307 -5 832 143 0 15 chr11 17695083 17695216 -133088337 - FLAM_C SINE Alu -2 131 1 690 157 0 50 chr11 17695350 17695471 -133088082 - FLAM_C SINE Alu -17 116 2 1653 233 119 25 chr11 17695471 17696034 -133087519 - L1MC4 LINE L1 -1819 5989 5374 1342 267 22 11 chr11 17696148 17696605 -133086948 - L1MC4 LINE L1 -1127 6915 6454 1920 157 0 23 chr11 17697044 17697343 -133086210 + AluJb SINE Alu 1 292 -20 895 201 211 4 chr11 17697851 17698130 -133085423 + MER46C DNA MER2_type 1 337 -1 2066 107 7 32 chr11 17698367 17698675 -133084878 + AluSx SINE Alu 2 301 -11 1090 147 9 65 chr11 17700242 17700417 -133083136 - AluJo SINE Alu -8 304 121 2193 90 3 40 chr11 17700417 17700717 -133082836 - AluSx SINE Alu -14 298 10 2257 103 0 13 chr11 17700720 17701022 -133082531 - AluSx SINE Alu -14 298 1 1090 147 9 65 chr11 17701022 17701074 -133082479 - AluJo SINE Alu -193 119 86 301 148 19 0 chr11 17701075 17701129 -133082424 - AluJo SINE Alu -162 140 86 2067 140 0 0 chr11 17701259 17701545 -133082008 + AluSx SINE Alu 1 286 -26 1778 288 172 21 chr11 17701656 17702614 -133080939 + L2 LINE L2 1927 3029 -284 2315 89 0 7 chr11 17703958 17704279 -133079274 - AluSg1 SINE Alu 0 309 1 596 294 43 48 chr11 17704309 17704707 -133078846 - L1ME4a LINE L1 -207 5914 5519 25 31 0 0 chr11 17704791 17704823 -133078730 + AT_rich Low_complexity Low_complexity 1 32 0 446 259 18 9 chr11 17704844 17704956 -133078597 + MER81 DNA DNA 2 114 0 364 177 175 3 chr11 17705110 17705227 -133078326 - L1MC4 LINE L1 -5 9456 9320 188 111 28 0 chr11 17705286 17705322 -133078231 + (TATATG)n Simple_repeat Simple_repeat 3 39 0 793 248 131 0 chr11 17705332 17705614 -133077939 - L1MC4 LINE L1 -124 9337 9019 699 184 86 6 chr11 17705650 17705813 -133077740 - L1MC4a LINE L1 -424 8803 8628 669 143 103 24 chr11 17705846 17705972 -133077581 - FLAM_C SINE Alu -5 138 3 1748 141 0 97 chr11 17705984 17706324 -133077229 - AluSx SINE Alu -3 309 3 253 292 45 39 chr11 17706418 17706596 -133076957 - L1ME LINE L1 -348 5773 5595 916 206 30 0 chr11 17706601 17706800 -133076753 + L1MC4 LINE L1 6870 7074 -968 790 159 48 0 chr11 17706905 17707031 -133076522 + FLAM_A SINE Alu 1 132 -1 17600 162 51 31 chr11 17707077 17707729 -133075824 - L1MA2 LINE L1 -10 7713 7075 3069 93 4 35 chr11 17707729 17708214 -133075339 - L1PA13 LINE L1 -4 6159 5690 17600 162 51 31 chr11 17708214 17708399 -133075154 - L1MA2 LINE L1 -648 7075 6895 2028 113 50 0 chr11 17708399 17708681 -133074872 + AluSx SINE Alu 1 296 -16 17600 162 51 31 chr11 17708681 17712435 -133071118 - L1MA2 LINE L1 -828 6895 3217 2098 146 0 10 chr11 17712435 17712743 -133070810 - AluSx SINE Alu -7 305 1 17600 162 51 31 chr11 17712743 17712777 -133070776 - L1MA2 LINE L1 -4506 3217 3185 2142 105 3 7 chr11 17712777 17713108 -133070445 - AluSx SINE Alu 0 330 1 17600 162 51 31 chr11 17713108 17713991 -133069562 - L1MA2 LINE L1 -4538 3185 2321 2243 121 3 6 chr11 17713991 17714305 -133069248 - AluSp SINE Alu 0 313 1 17600 162 51 31 chr11 17714305 17714317 -133069236 - L1MA2 LINE L1 -5402 2321 2311 2478 81 0 3 chr11 17714317 17714625 -133068928 - AluSp SINE Alu -6 307 1 17600 162 51 31 chr11 17714625 17715084 -133068469 - L1MA2 LINE L1 -5412 2311 1863 1814 180 0 0 chr11 17715084 17715367 -133068186 - AluSx SINE Alu -29 283 1 17600 162 51 31 chr11 17715367 17717830 -133065723 - L1MA2 LINE L1 -5860 1863 66 365 241 11 40 chr11 17717880 17718054 -133065499 - L1MC4a LINE L1 -1758 6050 5882 249 33 0 0 chr11 17718471 17718501 -133065052 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1679 177 0 0 chr11 17718509 17718775 -133064778 - AluJo SINE Alu -46 266 1 785 231 201 51 chr11 17720018 17720447 -133063106 - MLT1J LTR MaLR -2 509 17 1792 162 18 14 chr11 17720730 17721014 -133062539 - AluJo SINE Alu -23 289 5 473 296 131 37 chr11 17722146 17722552 -133061001 - LTR67 LTR ERVL 0 557 114 2258 125 0 0 chr11 17722610 17722907 -133060646 + AluSx SINE Alu 1 297 -15 2257 105 0 0 chr11 17723510 17723805 -133059748 - AluSg SINE Alu -15 295 1 382 127 0 0 chr11 17724011 17724074 -133059479 - MER46A DNA MER2_type -1 235 173 1274 121 0 6 chr11 17724074 17724248 -133059305 - AluSx SINE Alu -139 173 1 563 202 67 0 chr11 17724289 17724408 -133059145 - MER46A DNA MER2_type -109 127 1 2699 7 0 0 chr11 17724496 17724789 -133058764 + AluY SINE Alu 19 311 0 24 32 0 0 chr11 17724905 17724936 -133058617 + AT_rich Low_complexity Low_complexity 1 31 0 1887 181 0 0 chr11 17724946 17725244 -133058309 - AluJo SINE Alu -14 298 1 1953 120 40 7 chr11 17725636 17725938 -133057615 - AluSq SINE Alu 0 311 1 21 0 0 0 chr11 17726000 17726021 -133057532 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 17726267 17726288 -133057265 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr11 17726528 17726562 -133056991 + AT_rich Low_complexity Low_complexity 1 34 0 2325 116 0 0 chr11 17726656 17726967 -133056586 - AluSx SINE Alu -1 311 1 2102 139 0 0 chr11 17726982 17727291 -133056262 - AluSx SINE Alu -3 309 1 26697 26 11 0 chr11 17727359 17731297 -133052256 - L1PA4 LINE L1 -5 6150 2171 2207 82 0 0 chr11 17733430 17733723 -133049830 + AluSg SINE Alu 1 293 -17 21 82 0 0 chr11 17734010 17734059 -133049494 + AT_rich Low_complexity Low_complexity 1 49 0 428 226 174 0 chr11 17734130 17734245 -133049308 - L3 LINE CR1 -3 1574 1440 494 173 8 12 chr11 17734262 17734377 -133049176 - MER5B DNA MER1_type 0 178 1 1006 201 62 25 chr11 17734652 17734896 -133048657 - L1MC4a LINE L1 -8 7800 7548 1795 123 147 72 chr11 17734948 17735322 -133048231 - MER4A LTR ERV1 0 664 263 421 153 94 12 chr11 17735337 17735422 -133048131 - MER4A LTR ERV1 -572 92 1 1475 204 67 15 chr11 17735436 17735842 -133047711 - L1MC4 LINE L1 -108 7934 7508 744 176 157 19 chr11 17735854 17736064 -133047489 + MER5C DNA MER1_type 9 247 -77 186 43 0 0 chr11 17736093 17736116 -133047437 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 514 165 136 0 chr11 17736135 17736238 -133047315 - FLAM_C SINE Alu -25 118 2 1825 159 3 19 chr11 17736325 17736640 -133046913 - AluJb SINE Alu -2 310 1 198 301 157 0 chr11 17736654 17736737 -133046816 + L2 LINE L2 3208 3303 -10 2284 92 0 3 chr11 17736776 17737080 -133046473 - AluSq SINE Alu -9 304 2 369 284 142 64 chr11 17737080 17737261 -133046292 - L3 LINE CR1 -193 1384 1170 1724 253 62 12 chr11 17737261 17737748 -133045805 - MLT1J LTR MaLR 0 511 1 369 284 142 64 chr11 17737748 17737862 -133045691 - L3 LINE CR1 -407 1170 1066 2329 81 0 25 chr11 17738087 17738407 -133045146 + AluSx SINE Alu 1 312 0 242 347 110 8 chr11 17738964 17739108 -133044445 - MIR SINE MIR -58 150 14 2340 62 16 0 chr11 17740170 17740476 -133043077 - AluY SINE Alu 0 311 1 237 261 54 11 chr11 17740872 17740964 -133042589 + L1MC/D LINE L1 5379 5474 -2311 23 33 0 0 chr11 17741544 17741574 -133041979 + GC_rich Low_complexity Low_complexity 1 30 0 270 81 0 0 chr11 17742538 17742575 -133040978 + (T)n Simple_repeat Simple_repeat 1 37 0 512 196 36 102 chr11 17743083 17743119 -133040434 + L1M4 LINE L1 4338 4375 -1771 1824 153 10 13 chr11 17743119 17743432 -133040121 + AluJo SINE Alu 1 312 0 512 196 36 102 chr11 17743432 17743577 -133039976 + L1M4 LINE L1 4375 4528 -1618 1396 170 43 117 chr11 17743577 17743789 -133039764 - MLT1A1 LTR MaLR 0 365 139 1516 192 0 11 chr11 17743789 17744102 -133039451 - AluJo SINE Alu 0 310 1 1396 170 43 117 chr11 17744102 17744127 -133039426 - MLT1A1 LTR MaLR -226 139 114 2256 103 0 3 chr11 17744127 17744438 -133039115 - AluSg SINE Alu 0 310 1 1396 170 43 117 chr11 17744438 17744592 -133038961 - MLT1A1 LTR MaLR -251 114 1 512 196 36 102 chr11 17744592 17744634 -133038919 + L1M4 LINE L1 4528 4547 -1599 2394 122 37 19 chr11 17745136 17745514 -133038039 - MLT1B LTR MaLR 0 390 6 1500 173 18 0 chr11 17745725 17746002 -133037551 - AluJo SINE Alu -30 282 1 5438 127 123 136 chr11 17746024 17746592 -133036961 - L1MC3 LINE L1 -8 8572 7998 290 235 10 39 chr11 17746592 17746694 -133036859 - MLT1F1 LTR MaLR -443 124 26 5438 127 123 136 chr11 17746694 17747501 -133036052 - L1MC3 LINE L1 -582 7998 7116 2181 110 7 13 chr11 17747501 17747811 -133035742 - AluSx SINE Alu -4 308 1 718 129 19 8 chr11 17747813 17747949 -133035604 - L1MC3 LINE L1 -885 6269 6130 1378 150 53 9 chr11 17747951 17748177 -133035376 - AluJb SINE Alu -48 264 29 4501 190 114 116 chr11 17748178 17748754 -133034799 - L1MC3 LINE L1 -779 6162 5587 1512 181 75 3 chr11 17748754 17749036 -133034517 - AluJb SINE Alu 0 302 1 4501 190 114 116 chr11 17749036 17749289 -133034264 - L1MC3 LINE L1 -1354 5587 5335 2207 98 10 0 chr11 17749289 17749584 -133033969 - AluSx SINE Alu -14 298 1 4501 190 114 116 chr11 17749584 17749817 -133033736 - L1MC3 LINE L1 -1606 5335 5103 816 148 0 8 chr11 17749817 17749945 -133033608 - FLAM_C SINE Alu -16 127 1 4501 190 114 116 chr11 17749945 17750632 -133032921 - L1MC3 LINE L1 -1838 5103 4287 1189 78 11 6 chr11 17750678 17750684 -133032869 + (TTTC)n Simple_repeat Simple_repeat 1 186 0 1189 78 11 6 chr11 17750684 17750863 -133032690 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4033 214 78 59 chr11 17750918 17750946 -133032607 - L1MC3 LINE L1 -4501 2440 2414 1511 152 14 25 chr11 17750946 17751223 -133032330 - AluJb SINE Alu -38 274 1 4033 214 78 59 chr11 17751223 17751578 -133031975 - L1MC3 LINE L1 -4527 2414 2067 1729 176 0 19 chr11 17751578 17751896 -133031657 - AluJb SINE Alu 0 312 1 4033 214 78 59 chr11 17751896 17752191 -133031362 - L1MC3 LINE L1 -4874 2067 1779 1688 158 3 17 chr11 17752191 17752488 -133031065 - AluSx SINE Alu -14 298 6 4033 214 78 59 chr11 17752488 17752548 -133031005 - L1MC3 LINE L1 -5162 1779 1722 2197 101 3 0 chr11 17752548 17752845 -133030708 - AluSp SINE Alu -15 298 1 4033 214 78 59 chr11 17752845 17754068 -133029485 - L1MC3 LINE L1 -5219 1722 58 1172 250 89 64 chr11 17754075 17754547 -133029006 - MLT1J LTR MaLR -27 484 1 2289 84 3 0 chr11 17755821 17756117 -133027436 - AluSp SINE Alu -16 297 1 988 164 1 33 chr11 17756976 17757163 -133026390 + LTR25-int LTR ERV1 103 304 -6692 3505 109 87 17 chr11 17757841 17758373 -133025180 + MER61E LTR ERV1 1 569 0 30273 191 22 38 chr11 17758373 17764380 -133019173 + HUERS-P3 LTR ERV1 1 5912 -3007 14668 103 7 12 chr11 17764381 17765196 -133018357 + HUERS-P3 LTR ERV1 6938 7756 -1163 1825 143 0 35 chr11 17765196 17765510 -133018043 + AluSg SINE Alu 1 303 -7 14668 103 7 12 chr11 17765510 17766687 -133016866 + HUERS-P3 LTR ERV1 7756 8919 0 3872 121 12 23 chr11 17766687 17767258 -133016295 + MER61E LTR ERV1 1 565 -4 604 265 179 45 chr11 17767353 17767644 -133015909 + MLT1H LTR MaLR 10 339 -210 23 68 0 0 chr11 17767725 17767769 -133015784 + AT_rich Low_complexity Low_complexity 1 44 0 230 183 33 17 chr11 17767769 17767829 -133015724 + MLT1H LTR MaLR 489 549 0 614 271 73 75 chr11 17767863 17768136 -133015417 + LTR16B LTR ERVL 1 274 -190 2911 169 40 45 chr11 17768136 17768490 -133015063 + MER6A DNA MER2_type 5 356 -509 1778 161 0 13 chr11 17768490 17768789 -133014764 - AluJo SINE Alu -17 295 1 2911 169 40 45 chr11 17768789 17769038 -133014515 + MER6A DNA MER2_type 356 605 0 614 271 73 75 chr11 17769038 17769229 -133014324 + LTR16B LTR ERVL 274 464 0 454 265 33 40 chr11 17771154 17771241 -133012312 + MIR SINE MIR 20 107 -155 1944 160 86 3 chr11 17771241 17771578 -133011975 + MLT1A1 LTR MaLR 1 365 0 454 265 33 40 chr11 17771578 17771641 -133011912 + MIR SINE MIR 107 169 -93 301 287 158 68 chr11 17772551 17772962 -133010591 - L2 LINE L2 0 3272 2825 1182 176 94 0 chr11 17773299 17773532 -133010021 - MIR SINE MIR -1 261 7 2426 65 0 0 chr11 17776299 17776605 -133006948 + AluSg SINE Alu 1 306 -4 347 211 21 49 chr11 17777095 17777237 -133006316 + C-rich Low_complexity Low_complexity 6 143 0 199 100 0 40 chr11 17777409 17777459 -133006094 + (TCCCC)n Simple_repeat Simple_repeat 2 49 0 270 0 0 0 chr11 17777839 17777869 -133005684 + (A)n Simple_repeat Simple_repeat 1 30 0 265 326 82 37 chr11 17778479 17778724 -133004829 + L3 LINE CR1 1134 1389 -188 193 321 76 15 chr11 17779165 17779296 -133004257 + L2 LINE L2 2717 2855 -459 821 251 71 10 chr11 17779882 17780271 -133003282 + MLT1K LTR MaLR 143 575 -13 1931 163 48 13 chr11 17780379 17780754 -133002799 + MLT1B LTR MaLR 1 388 -2 199 174 0 29 chr11 17782018 17782087 -133001466 + (TG)n Simple_repeat Simple_repeat 2 68 0 310 215 165 0 chr11 17782976 17783055 -133000498 + MIR3 SINE MIR 73 164 -44 218 226 35 43 chr11 17784374 17784489 -132999064 + (CAGAGA)n Simple_repeat Simple_repeat 6 119 0 759 321 165 11 chr11 17786644 17786986 -132996567 + L2 LINE L2 2353 2641 -672 2287 94 0 22 chr11 17786986 17787304 -132996249 + AluSx SINE Alu 1 311 -1 759 321 165 11 chr11 17787304 17787779 -132995774 + L2 LINE L2 2641 3313 0 193 224 20 0 chr11 17788534 17788583 -132994970 + MIR SINE MIR 113 162 -100 721 294 22 1 chr11 17788669 17788891 -132994662 + MIR SINE MIR 22 249 -13 241 345 54 34 chr11 17788884 17789032 -132994521 + L3 LINE CR1 743 893 -684 * 243 340 20 0 chr11 17789224 17789324 -132994229 + L3 LINE CR1 1181 1282 -295 543 323 105 33 chr11 17789870 17790146 -132993407 + L2 LINE L2 2977 3272 0 426 304 29 41 chr11 17790160 17790331 -132993222 + MIR SINE MIR 80 248 -14 495 282 87 15 chr11 17790778 17790973 -132992580 + MIR SINE MIR 17 225 -37 904 237 88 0 chr11 17791655 17791883 -132991670 + MER112 DNA MER1_type 13 260 0 345 292 17 8 chr11 17792182 17792302 -132991251 + L1ME LINE L1 5547 5667 -454 1929 142 10 10 chr11 17792755 17793064 -132990489 - AluSq SINE Alu -4 309 1 200 363 38 0 chr11 17794369 17794449 -132989104 + MIR SINE MIR 158 240 -22 365 281 79 0 chr11 17794484 17794598 -132988955 - MIR SINE MIR -56 206 84 205 290 29 0 chr11 17795196 17795265 -132988288 - MIR SINE MIR -113 149 79 2186 206 45 54 chr11 17795616 17796173 -132987380 + MLT1K LTR MaLR 32 583 -5 1986 121 3 13 chr11 17796950 17797256 -132986297 - AluJb SINE Alu -9 303 1 860 189 25 61 chr11 17797868 17798064 -132985489 - AluJo SINE Alu 0 312 124 379 221 26 0 chr11 17798766 17798843 -132984710 + MIR SINE MIR 74 152 -56 323 288 127 65 chr11 17799034 17799357 -132984196 + L2 LINE L2 2921 3263 -9 214 344 82 82 chr11 17799590 17799869 -132983684 + L2 LINE L2 2962 3240 -32 770 211 76 22 chr11 17799872 17799888 -132983665 + MER117 DNA MER1_type 2 16 -181 2437 56 3 0 chr11 17799888 17800191 -132983362 - AluY SINE Alu -7 304 1 770 211 76 22 chr11 17800191 17800359 -132983194 + MER117 DNA MER1_type 16 196 -1 713 322 51 4 chr11 17801933 17802169 -132981384 + MIR SINE MIR 8 254 -8 688 204 21 0 chr11 17804510 17804652 -132978901 - L1MB7 LINE L1 -82 6102 5958 551 197 87 8 chr11 17804653 17804780 -132978773 - MER106A DNA MER1_type -70 166 30 190 191 24 0 chr11 17805235 17805277 -132978276 - MIR SINE MIR -65 143 101 426 273 119 4 chr11 17805298 17805525 -132978028 - MER112 DNA MER1_type -7 253 1 670 241 116 37 chr11 17805698 17805747 -132977806 - MIR SINE MIR 0 262 218 180 0 0 0 chr11 17805747 17805767 -132977786 + (TC)n Simple_repeat Simple_repeat 1 20 0 1846 110 0 31 chr11 17805767 17806057 -132977496 - AluJo SINE Alu -31 281 1 670 241 116 37 chr11 17806057 17806247 -132977306 - MIR SINE MIR -43 219 3 351 241 186 22 chr11 17806936 17807102 -132976451 - MIR SINE MIR -40 222 32 398 282 30 23 chr11 17807828 17807959 -132975594 + MIR SINE MIR 53 184 -78 424 308 29 23 chr11 17808234 17808406 -132975147 - MIR SINE MIR -55 207 35 225 289 105 0 chr11 17809206 17809282 -132974271 - L2 LINE L2 -73 3199 3116 221 330 22 33 chr11 17809486 17809577 -132973976 - L2 LINE L2 -56 3216 3127 222 231 294 50 chr11 17809637 17809797 -132973756 - MIR SINE MIR -56 206 8 238 326 130 59 chr11 17810765 17811035 -132972518 + L2 LINE L2 2804 3092 -180 2225 99 3 3 chr11 17811076 17811379 -132972174 + AluSg SINE Alu 1 303 -7 183 320 93 0 chr11 17811390 17811465 -132972088 + L2 LINE L2 3187 3268 -4 661 247 107 0 chr11 17811879 17812057 -132971496 + MIR SINE MIR 47 243 -19 2100 63 18 14 chr11 17812059 17812344 -132971209 + L1PA8 LINE L1 5887 6172 0 541 306 31 0 chr11 17812842 17813002 -132970551 + MIR SINE MIR 95 259 -3 6208 41 0 0 chr11 17813689 17814417 -132969136 - L1PA7 LINE L1 -4 6150 5423 573 298 96 9 chr11 17814686 17814904 -132968649 + MIR SINE MIR 25 261 -1 251 261 90 15 chr11 17816877 17817011 -132966542 + (TTAGGG)n Simple_repeat Simple_repeat 3 146 0 324 360 9 0 chr11 17817020 17817131 -132966422 - MIR SINE MIR -3 259 148 396 310 86 55 chr11 17818367 17818622 -132964931 + L3 LINE CR1 1180 1442 -135 641 266 131 8 chr11 17819687 17819939 -132963614 + L1ME4a LINE L1 5834 6116 -5 375 173 67 0 chr11 17820894 17820969 -132962584 + MIR SINE MIR 56 135 -127 189 340 0 0 chr11 17821679 17821726 -132961827 - L2 LINE L2 -87 3185 3139 390 282 40 8 chr11 17822308 17822432 -132961121 + L1ME LINE L1 5538 5665 -456 24 32 0 0 chr11 17822672 17822703 -132960850 + AT_rich Low_complexity Low_complexity 1 31 0 327 85 0 0 chr11 17822971 17823018 -132960535 + (TG)n Simple_repeat Simple_repeat 2 48 0 2495 67 0 6 chr11 17824806 17825120 -132958433 + AluSq SINE Alu 1 312 -1 2022 124 3 10 chr11 17825816 17826122 -132957431 + AluSx SINE Alu 1 304 -8 234 169 200 31 chr11 17826230 17826295 -132957258 + L2 LINE L2 3197 3272 0 211 293 136 50 chr11 17826360 17826500 -132957053 + L2 LINE L2 3100 3251 -21 272 401 24 0 chr11 17826810 17826977 -132956576 + MIR SINE MIR 64 234 -28 201 337 62 45 chr11 17826964 17827142 -132956411 + L2 LINE L2 3082 3262 -10 * 348 236 55 27 chr11 17829269 17829379 -132954174 + MIR SINE MIR 31 143 -65 254 273 36 36 chr11 17829393 17829503 -132954050 - L1MEd LINE L1 -5068 1051 942 953 219 83 22 chr11 17829520 17829748 -132953805 - ERVL LTR ERVL -3488 2276 2035 2371 105 0 0 chr11 17829799 17830095 -132953458 + AluSg SINE Alu 1 296 -14 519 307 27 0 chr11 17830389 17830539 -132953014 + L2 LINE L2 3160 3313 0 302 259 35 24 chr11 17831016 17831101 -132952452 - MIR SINE MIR -62 146 61 660 248 50 74 chr11 17832721 17832979 -132950574 + MIR SINE MIR 3 254 -8 215 254 0 0 chr11 17833067 17833122 -132950431 + MIR SINE MIR 68 122 -86 822 128 149 32 chr11 17833295 17833483 -132950070 + L1MB7 LINE L1 5964 6173 -11 2302 122 0 0 chr11 17833962 17834265 -132949288 - AluSx SINE Alu -9 303 1 753 161 0 0 chr11 17834459 17834577 -132948976 - FLAM_A SINE Alu -15 118 1 353 273 71 10 chr11 17835014 17835113 -132948440 - MIR SINE MIR -57 205 101 1112 168 21 133 chr11 17835424 17835763 -132947790 - AluJo SINE Alu 0 302 2 300 254 217 25 chr11 17835836 17836076 -132947477 - L1ME4a LINE L1 -23 6098 5813 753 182 0 0 chr11 17836116 17836248 -132947305 - FLAM_C SINE Alu 0 133 2 22 0 0 0 chr11 17836904 17836926 -132946627 + AT_rich Low_complexity Low_complexity 1 22 0 2095 135 7 3 chr11 17836928 17837225 -132946328 - AluSx SINE Alu -14 298 1 1017 72 22 28 chr11 17838233 17838413 -132945140 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2257 60 0 11 chr11 17838416 17838685 -132944868 - AluY SINE Alu -34 277 12 2369 108 0 0 chr11 17838685 17838982 -132944571 - AluSg SINE Alu -9 301 5 211 264 22 44 chr11 17839173 17839264 -132944289 + L3 LINE CR1 1382 1470 -107 392 175 0 0 chr11 17839434 17839497 -132944056 + MER91B DNA MER1_type 1 63 -127 847 291 124 23 chr11 17839704 17840147 -132943406 + MLT1J LTR MaLR 15 502 -9 2207 108 13 0 chr11 17840353 17840658 -132942895 - MER1B DNA MER1_type 0 339 31 350 227 0 0 chr11 17840776 17840842 -132942711 + MER117 DNA MER1_type 79 144 -53 474 239 18 0 chr11 17842660 17842773 -132940780 - MIR SINE MIR -78 184 70 2195 134 3 3 chr11 17843655 17843962 -132939591 + AluSx SINE Alu 1 307 -5 249 311 57 9 chr11 17844308 17844414 -132939139 - MIR SINE MIR -69 139 29 576 259 175 26 chr11 17844635 17844863 -132938690 + MIR SINE MIR 1 262 0 358 289 207 8 chr11 17844860 17845106 -132938447 - L2 LINE L2 0 3272 2978 * 180 111 0 0 chr11 17845261 17845288 -132938265 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 309 134 0 chr11 17845855 17845952 -132937601 + L3b LINE CR1 1339 1448 -135 295 320 20 0 chr11 17846772 17846872 -132936681 + L2 LINE L2 2982 3083 -189 606 228 24 24 chr11 17847006 17847173 -132936380 + MIR SINE MIR 2 168 -94 223 314 67 0 chr11 17847216 17847321 -132936232 + MIR SINE MIR 151 262 0 260 234 31 0 chr11 17847353 17847417 -132936136 + L2 LINE L2 3203 3268 -4 294 225 234 0 chr11 17848819 17848930 -132934623 - MIR3 SINE MIR -2 206 70 327 263 94 32 chr11 17849043 17849202 -132934351 + MIR SINE MIR 20 186 -57 364 202 29 58 chr11 17849300 17849404 -132934149 + MIR3 SINE MIR 100 200 -8 245 349 16 8 chr11 17849398 17849527 -132934026 + MIR3 SINE MIR 50 179 -29 * 383 253 142 31 chr11 17850165 17850333 -132933220 + MIR SINE MIR 30 212 -50 1055 269 84 17 chr11 17850412 17850828 -132932725 + L1ME4a LINE L1 5491 5934 -187 680 285 54 29 chr11 17851887 17852129 -132931424 - MIR SINE MIR -13 249 2 540 285 30 12 chr11 17852135 17852300 -132931253 - MIR3 SINE MIR -11 197 30 672 302 87 12 chr11 17852373 17852615 -132930938 + MIR SINE MIR 2 261 -1 403 314 16 16 chr11 17853325 17853504 -132930049 - MIR SINE MIR -44 218 41 327 325 17 54 chr11 17853645 17853885 -132929668 + L2 LINE L2 2458 2688 -626 2689 142 31 32 chr11 17853887 17854118 -132929435 + L1MB3 LINE L1 5664 5894 -289 2358 106 0 0 chr11 17854118 17854419 -132929134 + AluSg SINE Alu 1 301 -9 2689 142 31 32 chr11 17854419 17854617 -132928936 + L1MB3 LINE L1 5894 6093 -90 1783 124 0 141 chr11 17854617 17854965 -132928588 - AluJb SINE Alu -13 299 1 2689 142 31 32 chr11 17854965 17855038 -132928515 + L1MB3 LINE L1 6093 6165 -18 396 0 0 0 chr11 17855042 17855086 -132928467 + (CA)n Simple_repeat Simple_repeat 1 44 0 1635 152 12 8 chr11 17855140 17855396 -132928157 + AluSx SINE Alu 5 261 -51 370 303 92 5 chr11 17855424 17855609 -132927944 + L2 LINE L2 2856 3056 -257 789 240 42 18 chr11 17856506 17856723 -132926830 + MIR SINE MIR 41 262 0 334 293 57 21 chr11 17856727 17856867 -132926686 + MIR SINE MIR 104 248 -14 215 263 158 32 chr11 17856948 17857043 -132926510 + L2 LINE L2 2101 2207 -1107 408 125 0 0 chr11 17857046 17857110 -132926443 + (TTCC)n Simple_repeat Simple_repeat 2 65 0 2001 131 0 3 chr11 17857111 17857393 -132926160 - AluSx SINE Alu -31 281 1 304 313 121 4 chr11 17857393 17857649 -132925904 + L2 LINE L2 2192 2477 -837 831 269 182 12 chr11 17857654 17858066 -132925487 + L2 LINE L2 2832 3313 0 730 220 60 6 chr11 17858587 17858755 -132924798 - MIR SINE MIR -1 261 85 273 313 65 65 chr11 17859173 17859390 -132924163 - L2 LINE L2 -93 3179 2963 445 291 265 9 chr11 17859529 17859869 -132923684 + MLT1L LTR MaLR 120 546 -69 366 267 9 9 chr11 17859991 17860107 -132923446 - Charlie2a DNA MER1_type -4 2858 2743 * 964 214 71 7 chr11 17860093 17860374 -132923179 - Charlie2a DNA MER1_type -1837 1025 727 252 286 33 0 chr11 17860383 17860474 -132923079 - Charlie2a DNA MER1_type -2453 409 316 418 254 9 0 chr11 17860967 17861077 -132922476 - Charlie2 DNA MER1_type 0 2862 2752 276 228 41 73 chr11 17861087 17861210 -132922343 - MIR3 SINE MIR -85 123 5 1891 155 3 24 chr11 17863228 17863524 -132920029 - AluJo SINE Alu -22 290 1 263 265 43 8 chr11 17864832 17864949 -132918604 + (CCCCG)n Simple_repeat Simple_repeat 2 122 0 307 288 0 0 chr11 17866527 17866600 -132916953 - MIR SINE MIR -58 150 78 391 294 56 8 chr11 17866763 17866889 -132916664 + MIR SINE MIR 50 181 -81 227 244 39 51 chr11 17867113 17867191 -132916362 + MIR SINE MIR 38 114 -94 607 91 0 0 chr11 17867817 17867938 -132915615 + AluJb SINE Alu 194 314 0 627 170 0 71 chr11 17868559 17868700 -132914853 - FLAM_C SINE Alu -1 132 2 186 283 0 0 chr11 17869452 17869498 -132914055 - L2 LINE L2 -5 3308 3263 * 427 282 155 17 chr11 17869485 17869666 -132913887 - MIR SINE MIR -44 218 13 378 222 125 76 chr11 17870317 17870461 -132913092 + MIR SINE MIR 33 183 -79 23 33 0 0 chr11 17870550 17870580 -132912973 + AT_rich Low_complexity Low_complexity 1 30 0 279 328 129 5 chr11 17870580 17870766 -132912787 - MIR SINE MIR -13 249 41 5843 94 24 14 chr11 17870925 17871082 -132912471 - L1MA3 LINE L1 -2 6303 6149 2192 111 3 7 chr11 17871082 17871379 -132912174 - AluSx SINE Alu -16 296 1 5843 94 24 14 chr11 17871379 17872113 -132911440 - L1MA3 LINE L1 -156 6149 5403 1846 182 43 3 chr11 17872184 17872535 -132911018 + MLT1A1 LTR MaLR 1 365 0 204 228 18 0 chr11 17872681 17872738 -132910815 + GA-rich Low_complexity Low_complexity 1 58 0 371 266 0 18 chr11 17873260 17873369 -132910184 - MIR SINE MIR -133 129 23 738 164 99 18 chr11 17873371 17873542 -132910011 + MER5A DNA MER1_type 4 188 -1 206 163 0 70 chr11 17873952 17873995 -132909558 - L2 LINE L2 -2 3270 3231 183 285 36 79 chr11 17874044 17874209 -132909344 + L2 LINE L2 2943 3100 -172 2377 213 80 47 chr11 17874550 17874758 -132908795 - LTR68 LTR ERV1 0 740 540 1538 124 16 4 chr11 17874758 17875016 -132908537 + L1MB3 LINE L1 5916 6176 -7 2377 213 80 47 chr11 17875016 17875155 -132908398 - LTR68 LTR ERV1 -200 540 407 5566 68 12 17 chr11 17875155 17875788 -132907765 - L1MA2 LINE L1 0 6304 5674 2280 103 0 17 chr11 17875788 17876089 -132907464 - AluSc SINE Alu -9 300 5 5566 68 12 17 chr11 17876089 17876273 -132907280 - L1MA2 LINE L1 -630 5674 5491 2377 213 80 47 chr11 17876273 17876641 -132906912 - LTR68 LTR ERV1 -333 407 1 419 237 92 8 chr11 17876910 17877041 -132906512 - MIR SINE MIR -35 227 86 1070 271 124 6 chr11 17877356 17877695 -132905858 + MLT1K LTR MaLR 33 411 -177 2159 153 65 5 chr11 17877701 17878087 -132905466 + MLT2D LTR ERVL 6 414 0 284 250 281 0 chr11 17878087 17878214 -132905339 + MLT1K LTR MaLR 415 577 -11 311 327 107 5 chr11 17878283 17878488 -132905065 - L2 LINE L2 -243 3029 2804 745 273 88 9 chr11 17878560 17878787 -132904766 + MIR SINE MIR 2 246 -16 200 250 80 45 chr11 17879316 17879404 -132904149 + MIR SINE MIR 63 153 -55 810 250 55 51 chr11 17880206 17880462 -132903091 + MIR SINE MIR 5 261 -1 316 283 0 43 chr11 17883985 17884123 -132899430 + (CAGAGA)n Simple_repeat Simple_repeat 6 137 0 * 320 296 6 45 chr11 17884049 17884225 -132899328 + GA-rich Low_complexity Low_complexity 4 172 0 194 273 0 0 chr11 17884345 17884400 -132899153 + L3b LINE CR1 1344 1398 -185 353 287 100 40 chr11 17885054 17885204 -132898349 + MER5A DNA MER1_type 10 168 -21 649 318 195 20 chr11 17885371 17885609 -132897944 - L3 LINE CR1 -202 1375 1180 486 271 45 15 chr11 17885609 17885742 -132897811 - MER91C DNA MER1_type -3 137 1 649 318 195 20 chr11 17885742 17886010 -132897543 - L3 LINE CR1 -397 1180 780 814 265 192 21 chr11 17886597 17886982 -132896571 + L2 LINE L2 2862 3312 -1 439 274 46 20 chr11 17887006 17887159 -132896394 + MER103 DNA DNA 1 157 -9 186 280 215 0 chr11 17887673 17887766 -132895787 - MIR SINE MIR -62 146 34 917 223 5 5 chr11 17888298 17888482 -132895071 + MIR SINE MIR 39 222 -40 222 279 112 45 chr11 17888567 17888746 -132894807 + L2 LINE L2 2927 3117 -155 468 284 55 11 chr11 17891402 17891585 -132891968 - MIR3 SINE MIR -2 206 16 691 265 39 0 chr11 17891663 17891844 -132891709 + MIR SINE MIR 2 189 -73 362 329 121 33 chr11 17893347 17893587 -132889966 + MIR SINE MIR 2 262 0 545 282 162 28 chr11 17894457 17894970 -132888583 + L2 LINE L2 2692 3272 0 599 300 57 53 chr11 17895537 17895764 -132887789 - MIR SINE MIR 0 262 35 486 296 15 8 chr11 17898078 17898210 -132885343 + MER94 DNA DNA 1 133 -1 181 352 88 11 chr11 17898736 17898827 -132884726 + L3 LINE CR1 1477 1574 -3 477 240 48 20 chr11 17900287 17900433 -132883120 + MIR SINE MIR 71 220 -42 209 125 0 62 chr11 17900438 17900486 -132883067 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 413 267 10 0 chr11 17901043 17901161 -132882392 - MIR SINE MIR -62 146 32 241 268 12 37 chr11 17901550 17901632 -132881921 + MARNA DNA Mariner 156 235 -351 207 100 0 0 chr11 17901817 17901847 -132881706 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 195 286 71 41 chr11 17901966 17902064 -132881489 + L2 LINE L2 3088 3188 -84 1958 142 0 0 chr11 17902210 17902505 -132881048 - AluSx SINE Alu -3 309 15 273 98 0 0 chr11 17903044 17903085 -132880468 + (TG)n Simple_repeat Simple_repeat 2 42 0 2123 104 3 7 chr11 17906738 17907037 -132876516 + AluSp SINE Alu 1 298 -15 1817 121 21 14 chr11 17909850 17910132 -132873421 - AluSx SINE Alu -28 284 1 601 278 98 10 chr11 17910295 17910500 -132873053 + MIR SINE MIR 38 260 -2 512 237 125 0 chr11 17911835 17911987 -132871566 - MIR SINE MIR -3 259 89 665 318 99 0 chr11 17911988 17912199 -132871354 + MIR SINE MIR 13 244 -18 961 139 42 18 chr11 17912841 17913007 -132870546 - FRAM SINE Alu -7 169 1 681 254 79 0 chr11 17913080 17913245 -132870308 - MER117 DNA MER1_type -16 181 4 682 251 96 0 chr11 17913421 17913620 -132869933 - MIR SINE MIR 0 262 45 235 88 0 0 chr11 17913801 17913835 -132869718 + MIR SINE MIR 112 145 -63 1820 171 0 0 chr11 17913919 17914212 -132869341 + AluJb SINE Alu 1 293 -19 345 207 0 101 chr11 17915125 17915323 -132868230 + CT-rich Low_complexity Low_complexity 2 179 0 301 286 151 24 chr11 17915664 17915790 -132867763 - MIR3 SINE MIR -52 156 15 836 219 113 21 chr11 17916083 17916321 -132867232 + MIR SINE MIR 3 262 0 317 244 70 0 chr11 17916538 17916624 -132866929 - MIR SINE MIR -61 147 56 500 243 40 46 chr11 17917003 17917155 -132866398 - MIR SINE MIR -65 197 47 264 231 0 51 chr11 17918481 17918559 -132864994 + MIR3 SINE MIR 9 82 -126 810 257 45 14 chr11 17918702 17918924 -132864629 - MIR SINE MIR -30 232 4 264 342 98 40 chr11 17920150 17920425 -132863128 + L2 LINE L2 2712 2970 -343 1968 145 0 7 chr11 17920425 17920735 -132862818 - AluJb SINE Alu -4 308 1 264 342 98 40 chr11 17920735 17921016 -132862537 + L2 LINE L2 2970 3313 0 411 317 41 7 chr11 17921110 17921255 -132862298 + L2 LINE L2 3123 3272 0 2283 97 3 0 chr11 17922728 17923028 -132860525 + AluSx SINE Alu 1 301 -11 543 291 223 18 chr11 17923248 17923762 -132859791 + L2 LINE L2 2672 3309 -4 563 233 55 7 chr11 17923919 17924065 -132859488 - MIR SINE MIR -103 159 7 184 337 62 45 chr11 17924066 17924244 -132859309 - L3b LINE CR1 -103 1480 1300 471 185 65 0 chr11 17925931 17926039 -132857514 - MIR SINE MIR -41 221 107 352 241 11 0 chr11 17926678 17926765 -132856788 + MIR SINE MIR 163 250 -12 832 263 189 7 chr11 17926765 17927198 -132856355 + LTR33 LTR ERVL 1 512 -9 204 300 0 50 chr11 17927244 17927344 -132856209 + L2 LINE L2 2993 3087 -185 384 141 26 127 chr11 17927507 17927685 -132855868 + MIR SINE MIR 104 257 -5 221 250 0 16 chr11 17927831 17927895 -132855658 + CT-rich Low_complexity Low_complexity 3 65 0 239 120 0 20 chr11 17927906 17927956 -132855597 + (TCTCTG)n Simple_repeat Simple_repeat 6 54 0 2105 138 3 0 chr11 17927956 17928267 -132855286 - AluJo SINE Alu 0 312 1 618 252 0 7 chr11 17928275 17928418 -132855135 - L1MA10 LINE L1 0 6334 6193 1341 257 184 19 chr11 17928487 17929536 -132854017 + L2 LINE L2 2063 3313 0 341 356 53 0 chr11 17929995 17930127 -132853426 - MIR SINE MIR -92 170 32 * 630 237 27 48 chr11 17930126 17930312 -132853241 - MIR SINE MIR -1 261 80 2436 62 0 20 chr11 17932882 17933188 -132850365 - AluY SINE Alu -11 300 1 186 43 0 0 chr11 17933441 17933464 -132850089 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 235 314 139 0 chr11 17934457 17934543 -132849010 + L2 LINE L2 3162 3259 -13 285 29 0 0 chr11 17934543 17934577 -132848976 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 210 118 0 0 chr11 17934621 17934655 -132848898 + (CCA)n Simple_repeat Simple_repeat 1 34 0 181 325 36 12 chr11 17935065 17935148 -132848405 + MIR3 SINE MIR 107 191 -17 315 0 0 0 chr11 17936554 17936589 -132846964 + (T)n Simple_repeat Simple_repeat 1 35 0 1860 168 7 3 chr11 17936851 17937149 -132846404 - AluJo SINE Alu -13 299 1 1824 192 35 19 chr11 17938155 17938618 -132844935 + Charlie4a DNA MER1_type 39 508 0 294 202 181 11 chr11 17939187 17939281 -132844272 + L2 LINE L2 3166 3275 -38 420 341 80 45 chr11 17941863 17942215 -132841338 - L2 LINE L2 -3 3310 2947 309 298 133 85 chr11 17942286 17942534 -132841019 + L2 LINE L2 3012 3271 -1 449 232 99 20 chr11 17942926 17943077 -132840476 - MER112 DNA MER1_type -21 239 77 252 0 0 0 chr11 17943340 17943368 -132840185 + (TG)n Simple_repeat Simple_repeat 1 28 0 320 197 58 98 chr11 17943623 17943784 -132839769 + MIR SINE MIR 2 160 -48 308 203 68 51 chr11 17945594 17945712 -132837841 + MIR SINE MIR 70 189 -73 448 288 50 0 chr11 17945907 17946046 -132837507 - MIR SINE MIR -41 221 76 321 322 0 0 chr11 17946934 17947024 -132836529 - MIR SINE MIR -82 126 37 979 142 11 0 chr11 17947886 17948062 -132835491 + GA-rich Low_complexity Low_complexity 1 178 0 282 56 0 0 chr11 17950179 17950215 -132833338 + (TA)n Simple_repeat Simple_repeat 2 37 0 840 41 0 0 chr11 17950298 17950395 -132833158 + AluY SINE Alu 210 306 -5 213 94 0 0 chr11 17950915 17950947 -132832606 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 261 360 96 22 chr11 17950950 17951128 -132832425 - L2 LINE L2 -2 3270 3080 203 211 0 0 chr11 17951200 17951238 -132832315 - L2 LINE L2 -219 3053 3016 1626 176 7 55 chr11 17951821 17952128 -132831425 - AluJb SINE Alu -20 292 1 194 289 41 10 chr11 17952178 17952275 -132831278 - L3 LINE CR1 -152 1425 1326 241 321 31 119 chr11 17952284 17952602 -132830951 - L2 LINE L2 -26 3246 2957 314 330 63 19 chr11 17952799 17953005 -132830548 - MIR SINE MIR -1 261 47 3244 142 150 141 chr11 17953076 17953637 -132829916 - L1MC3 LINE L1 0 7785 7230 272 300 82 9 chr11 17953637 17953747 -132829806 - MLT1F1 LTR MaLR -442 125 8 3244 142 150 141 chr11 17953747 17954208 -132829345 - L1MC3 LINE L1 -555 7230 6644 1937 131 9 25 chr11 17954257 17954577 -132828976 + MER2 DNA MER2_type 31 345 0 2653 162 40 4 chr11 17954577 17955107 -132828446 - L1MC3 LINE L1 -1140 6645 6097 324 356 37 0 chr11 17955185 17955320 -132828233 - MIR SINE MIR -102 160 21 774 154 8 0 chr11 17955646 17955776 -132827777 - FLAM_C SINE Alu -2 131 1 328 387 35 25 chr11 17955780 17955979 -132827574 + L2 LINE L2 2835 3035 -237 * 419 279 12 67 chr11 17955970 17956026 -132827527 + MIR SINE MIR 104 162 -100 2411 64 0 0 chr11 17956026 17956339 -132827214 - AluY SINE Alu 0 313 1 419 279 12 67 chr11 17956339 17956446 -132827107 + MIR SINE MIR 162 259 -3 412 273 83 49 chr11 17956559 17956764 -132826789 + L2 LINE L2 3100 3311 -2 237 33 0 0 chr11 17958203 17958233 -132825320 + (CAGG)n Simple_repeat Simple_repeat 3 32 0 408 337 118 0 chr11 17958690 17958859 -132824694 - MER5A DNA MER1_type 0 189 1 213 94 0 0 chr11 17959880 17959912 -132823641 + (TG)n Simple_repeat Simple_repeat 1 32 0 237 327 26 0 chr11 17960010 17960123 -132823430 + (TG)n Simple_repeat Simple_repeat 1 116 0 725 253 92 28 chr11 17960559 17960999 -132822554 + L2 LINE L2 2748 3207 -106 295 280 181 11 chr11 17961460 17961742 -132821811 + L2 LINE L2 2265 2594 -720 402 224 12 0 chr11 17961865 17961950 -132821603 + L2 LINE L2 3186 3271 -1 * 445 273 52 32 chr11 17961938 17962077 -132821476 + MIR3 SINE MIR 10 154 -54 703 268 0 6 chr11 17962077 17962256 -132821297 + MER5B DNA MER1_type 1 178 0 445 273 52 32 chr11 17962256 17962270 -132821283 + MIR3 SINE MIR 154 166 -42 450 218 55 9 chr11 17962674 17962784 -132820769 + MIR SINE MIR 28 142 -120 693 303 75 10 chr11 17963321 17963615 -132819938 - L2 LINE L2 -6 3307 2995 193 255 0 20 chr11 17963729 17963780 -132819773 + MIR SINE MIR 95 144 -64 192 364 0 0 chr11 17964148 17964214 -132819339 + MIR SINE MIR 149 214 -48 479 260 24 0 chr11 17965618 17965741 -132817812 + MIR SINE MIR 5 130 -132 256 305 85 17 chr11 17966163 17966281 -132817272 + MIR SINE MIR 115 240 -22 243 327 10 29 chr11 17966878 17966982 -132816571 + MIR SINE MIR 128 229 -33 327 217 144 72 chr11 17967461 17967641 -132815912 - MIR SINE MIR -42 220 28 352 232 232 0 chr11 17968384 17968483 -132815070 + MIR SINE MIR 22 143 -119 318 291 157 0 chr11 17968867 17969001 -132814552 - MIR SINE MIR -6 256 102 489 320 80 52 chr11 17969001 17969539 -132814014 + HAL1 LINE L1 1 553 -1954 551 256 11 15 chr11 17969733 17969913 -132813640 - L1ME2 LINE L1 0 6170 5997 * 911 243 70 21 chr11 17969908 17970192 -132813361 - L1ME2 LINE L1 -101 6063 5766 6274 230 78 41 chr11 17970203 17971262 -132812291 - L1ME3A LINE L1 -27 6143 5124 1703 174 44 7 chr11 17971262 17971556 -132811997 - AluJo SINE Alu -7 305 1 6274 230 78 41 chr11 17971556 17972663 -132810890 - L1ME3A LINE L1 -1046 5124 3799 1933 173 0 0 chr11 17972663 17972958 -132810595 - AluSx SINE Alu -17 295 1 6274 230 78 41 chr11 17972958 17973710 -132809843 - L1ME3A LINE L1 -2371 3799 3076 215 346 0 22 chr11 17974930 17975066 -132808487 + (TATATG)n Simple_repeat Simple_repeat 3 135 0 275 304 5 38 chr11 17975119 17975362 -132808191 + (TATATG)n Simple_repeat Simple_repeat 1 235 0 7129 266 80 18 chr11 17976708 17979289 -132804264 + L2 LINE L2 564 3310 -3 245 293 138 26 chr11 17979306 17979422 -132804131 + MIR SINE MIR 13 141 -121 686 282 37 33 chr11 17979984 17980225 -132803328 - MIR SINE MIR -3 259 18 203 220 0 20 chr11 17980387 17980437 -132803116 + (TAA)n Simple_repeat Simple_repeat 3 51 0 185 237 17 34 chr11 17980583 17980642 -132802911 + L2 LINE L2 1795 1852 -1462 547 302 180 12 chr11 17980721 17981065 -132802488 - L1MC4a LINE L1 -1913 5895 5494 195 282 19 87 chr11 17981091 17981194 -132802359 - L2 LINE L2 0 3313 3218 204 341 35 0 chr11 17982628 17982713 -132800840 - L2 LINE L2 -180 3092 3005 351 255 43 11 chr11 17982859 17982953 -132800600 + MIR SINE MIR 20 116 -92 625 320 10 0 chr11 17982976 17983170 -132800383 + MER117 DNA MER1_type 2 197 0 2705 197 30 34 chr11 17983518 17984111 -132799442 - MLT1E LTR MaLR 0 593 3 245 342 79 26 chr11 17984532 17984722 -132798831 - L3b LINE CR1 -190 1393 1194 720 264 110 18 chr11 17985220 17985447 -132798106 - MIR SINE MIR -8 254 7 386 325 23 12 chr11 17985443 17985613 -132797940 + MIR SINE MIR 39 212 -50 * 24 0 0 0 chr11 17985794 17985818 -132797735 + AT_rich Low_complexity Low_complexity 1 24 0 527 266 107 17 chr11 17985945 17986122 -132797431 + MIR SINE MIR 31 223 -39 210 279 131 0 chr11 17986233 17986294 -132797259 - MIR SINE MIR -11 251 183 1792 191 53 20 chr11 17986297 17986695 -132796858 + MER96B DNA MER1_type? 7 417 0 376 354 32 6 chr11 17986701 17986859 -132796694 - MIR SINE MIR -93 169 8 258 290 14 0 chr11 17987461 17987530 -132796023 - L3 LINE CR1 -235 1342 1273 207 100 0 0 chr11 17988981 17989011 -132794542 + (CCCA)n Simple_repeat Simple_repeat 2 31 0 566 229 145 6 chr11 17989088 17989267 -132794286 - MER63A DNA MER1_type 0 210 7 342 302 41 60 chr11 17989366 17989634 -132793919 - L2 LINE L2 -173 3099 2837 275 191 0 17 chr11 17990788 17990909 -132792644 + CT-rich Low_complexity Low_complexity 1 118 0 411 300 206 5 chr11 17990909 17991132 -132792421 - L2 LINE L2 -20 3252 2985 227 315 22 11 chr11 17991147 17991239 -132792314 - L2 LINE L2 -512 2802 2710 236 300 88 41 chr11 17991775 17991945 -132791608 - L2 LINE L2 -167 3105 2928 1048 212 60 24 chr11 17992043 17992293 -132791260 - MIR SINE MIR -2 260 2 377 243 47 0 chr11 17992436 17992543 -132791010 - MIR3 SINE MIR -48 160 49 264 276 187 15 chr11 17992604 17992738 -132790815 + MIR SINE MIR 12 168 -94 618 232 8 8 chr11 17992775 17992900 -132790653 + L2 LINE L2 3188 3312 -1 251 295 32 42 chr11 17992893 17992988 -132790565 + MIR SINE MIR 144 237 -25 * 404 264 58 16 chr11 17993577 17993698 -132789855 + L2 LINE L2 3187 3312 -1 478 308 137 4 chr11 17995107 17995334 -132788219 + MIR SINE MIR 1 257 -5 472 300 8 8 chr11 17995614 17995744 -132787809 + MIR SINE MIR 100 229 -33 311 284 165 9 chr11 17997497 17997606 -132785947 - MIR3 SINE MIR -46 162 37 236 318 0 9 chr11 17999787 17999894 -132783659 + (TG)n Simple_repeat Simple_repeat 1 106 0 228 35 0 0 chr11 17999947 17999976 -132783577 + (TG)n Simple_repeat Simple_repeat 2 30 0 301 289 16 25 chr11 18001319 18001440 -132782113 - L1M4 LINE L1 -2954 3192 3073 321 14 0 0 chr11 18001460 18001532 -132782021 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 796 179 125 22 chr11 18002068 18002252 -132781301 - MER69 DNA AcHobo -1023 203 1 4803 244 70 32 chr11 18002574 18003781 -132779772 - L1ME1 LINE L1 -8 6227 5068 2291 83 17 0 chr11 18003781 18004070 -132779483 + AluSp SINE Alu 1 294 -19 4803 244 70 32 chr11 18004070 18004186 -132779367 - L1ME1 LINE L1 -1167 5068 4958 1900 175 10 0 chr11 18004186 18004489 -132779064 - AluJo SINE Alu -6 306 1 4803 244 70 32 chr11 18004489 18006035 -132777518 - L1ME1 LINE L1 -1277 4958 3472 2296 87 37 0 chr11 18006035 18006333 -132777220 - AluY SINE Alu -2 309 1 4803 244 70 32 chr11 18006333 18007129 -132776424 - L1ME1 LINE L1 -2763 3472 2708 1736 168 10 30 chr11 18007129 18007427 -132776126 + AluJb SINE Alu 14 305 -7 4803 244 70 32 chr11 18007427 18008206 -132775347 - L1ME1 LINE L1 -3527 2708 1552 2922 141 6 4 chr11 18008206 18008682 -132774871 - L1MB5 LINE L1 0 6174 5698 4803 244 70 32 chr11 18008682 18008831 -132774722 - L1ME1 LINE L1 -4683 1552 1410 3448 238 71 47 chr11 18008842 18009728 -132773825 - L1ME1 LINE L1 -5130 1266 343 183 42 0 0 chr11 18009728 18009752 -132773801 + (TC)n Simple_repeat Simple_repeat 2 25 0 3448 238 71 47 chr11 18009752 18010069 -132773484 - L1ME1 LINE L1 -6053 343 35 249 320 39 19 chr11 18010168 18010271 -132773282 - MIR3 SINE MIR -22 186 82 12266 144 33 11 chr11 18010364 18011271 -132772282 - L1MA2 LINE L1 0 6304 5419 9718 154 5 7 chr11 18011271 18013724 -132769829 - L1PA13 LINE L1 0 6163 3715 12266 144 33 11 chr11 18013724 18014299 -132769254 - L1MA2 LINE L1 -885 5419 4858 2303 126 0 0 chr11 18014299 18014608 -132768945 - AluSx SINE Alu -3 309 1 12266 144 33 11 chr11 18014608 18016473 -132767080 - L1MA2 LINE L1 -1446 4858 2870 492 297 66 76 chr11 18016668 18016971 -132766582 - L2 LINE L2 -8 3264 2965 301 241 0 0 chr11 18017105 18017159 -132766394 + L2 LINE L2 3211 3264 -8 519 95 0 0 chr11 18017159 18017233 -132766320 + (TGGA)n Simple_repeat Simple_repeat 3 76 0 405 248 25 57 chr11 18017733 18017890 -132765663 - MIR SINE MIR -31 231 80 249 33 0 0 chr11 18018107 18018137 -132765416 + (CA)n Simple_repeat Simple_repeat 2 31 0 409 171 14 0 chr11 18018279 18018349 -132765204 - L2 LINE L2 -50 3263 3193 291 93 0 0 chr11 18018380 18018423 -132765130 + (CACCAT)n Simple_repeat Simple_repeat 1 43 0 180 357 57 51 chr11 18018677 18018834 -132764719 - L2 LINE L2 -5 3267 3110 215 219 68 55 chr11 18018879 18018952 -132764601 - L2 LINE L2 -329 2984 2911 231 224 0 35 chr11 18019040 18019098 -132764455 - MLT1J1 LTR MaLR -52 394 339 * 274 193 9 0 chr11 18019097 18019161 -132764392 - MLT1J2 LTR MaLR -137 367 267 656 265 38 0 chr11 18019170 18019355 -132764198 - MLT1J1 LTR MaLR -249 197 6 321 178 178 85 chr11 18019380 18019498 -132764055 - L1MC4 LINE L1 0 8042 7914 418 224 37 0 chr11 18019560 18019667 -132763886 - L1MC4 LINE L1 -128 7914 7804 348 278 31 10 chr11 18019672 18019769 -132763784 + MIR SINE MIR 95 193 -69 43 35 0 0 chr11 18020493 18020550 -132763003 + AT_rich Low_complexity Low_complexity 1 57 0 694 216 116 30 chr11 18021021 18021183 -132762370 - MER112 DNA MER1_type -8 252 63 404 302 113 0 chr11 18021183 18021342 -132762211 - MER5B DNA MER1_type -1 177 1 694 216 116 30 chr11 18021342 18021411 -132762142 - MER112 DNA MER1_type -197 63 1 1121 232 0 5 chr11 18021421 18021645 -132761908 - MER58A DNA MER1_type -1 223 1 360 273 38 42 chr11 18022573 18022753 -132760800 + MIR SINE MIR 3 181 -63 549 285 74 22 chr11 18024907 18025134 -132758419 + MIR SINE MIR 24 261 -1 295 246 136 53 chr11 18025159 18025423 -132758130 - L1ME4a LINE L1 -3 6118 5833 233 304 32 8 chr11 18025574 18025699 -132757854 - L1MC5 LINE L1 -523 7438 7311 355 308 145 36 chr11 18025731 18025952 -132757601 - L1MC4a LINE L1 -450 7358 7114 663 122 0 9 chr11 18026948 18027214 -132756339 + AluSg1 SINE Alu 1 311 -1 196 268 141 0 chr11 18027744 18027815 -132755738 + MIR SINE MIR 109 189 -73 271 245 0 29 chr11 18027818 18027957 -132755596 + (ATG)n Simple_repeat Simple_repeat 1 135 0 * 802 174 5 18 chr11 18027942 18028169 -132755384 + (ATGGTG)n Simple_repeat Simple_repeat 1 223 0 273 197 0 0 chr11 18028176 18028242 -132755311 + (ATG)n Simple_repeat Simple_repeat 3 68 0 749 262 136 5 chr11 18028245 18028466 -132755087 - MIR SINE MIR -5 257 8 270 294 0 24 chr11 18029533 18029618 -132753935 + L2 LINE L2 3226 3308 -5 * 332 284 40 0 chr11 18029613 18029722 -132753831 - MIR SINE MIR -63 145 45 305 331 0 0 chr11 18030952 18031088 -132752465 + (CA)n Simple_repeat Simple_repeat 2 137 0 186 350 17 0 chr11 18031160 18031220 -132752333 - MIR SINE MIR -113 149 89 341 182 300 9 chr11 18032600 18032710 -132750843 - L2 LINE L2 -14 3299 3158 542 188 23 8 chr11 18032729 18032857 -132750696 - MER69 DNA AcHobo -15 2511 2382 256 296 24 59 chr11 18032968 18033137 -132750416 - L2 LINE L2 -203 3110 2948 741 209 12 0 chr11 18036194 18036357 -132747196 + L1M4 LINE L1 2864 3028 -3118 349 309 169 25 chr11 18037368 18037412 -132746141 + L1MC4a LINE L1 5600 5636 -2172 2547 173 32 10 chr11 18037412 18037904 -132745649 + MLT1D LTR MaLR 1 503 -2 349 309 169 25 chr11 18037904 18038102 -132745451 + L1MC4a LINE L1 5636 5877 -1931 300 20 61 0 chr11 18038166 18038215 -132745338 + (CA)n Simple_repeat Simple_repeat 2 53 0 756 234 111 16 chr11 18039251 18039495 -132744058 - MLT1J2 LTR MaLR -139 311 45 375 263 91 42 chr11 18040474 18040610 -132742943 - MIR SINE MIR -46 162 22 1666 121 103 18 chr11 18040778 18041051 -132742502 + AluSx SINE Alu 3 298 -14 22 0 0 30 chr11 18041153 18041171 -132742382 + AT_rich Low_complexity Low_complexity 1 19 -13 2128 128 0 17 chr11 18041171 18041469 -132742084 - AluSx SINE Alu -19 293 1 22 0 0 30 chr11 18041469 18041483 -132742070 + AT_rich Low_complexity Low_complexity 19 32 0 811 174 8 0 chr11 18041483 18041615 -132741938 - FLAM_C SINE Alu -5 138 6 787 229 56 104 chr11 18041754 18042129 -132741424 + LTR67 LTR ERVL 198 554 -3 216 193 58 87 chr11 18042224 18042328 -132741225 - MIR SINE MIR -102 106 18 1152 242 59 44 chr11 18042476 18042825 -132740728 - L2 LINE L2 -1731 1583 1226 1729 172 36 10 chr11 18042825 18043127 -132740426 - AluJo SINE Alu -2 310 1 1152 242 59 44 chr11 18043127 18043186 -132740367 - L2 LINE L2 -2088 1226 1169 253 254 0 0 chr11 18043202 18043257 -132740296 - L2 LINE L2 -2569 745 691 370 301 0 45 chr11 18043268 18043340 -132740213 - L1MC4a LINE L1 -1885 5923 5858 2275 118 0 3 chr11 18043340 18043637 -132739916 - AluSp SINE Alu -16 297 2 370 301 0 45 chr11 18043637 18043697 -132739856 - L1MC4a LINE L1 -1950 5858 5797 253 83 0 0 chr11 18044556 18044592 -132738961 + tRNA-His-CAC tRNA tRNA 1 36 -39 2285 102 7 0 chr11 18044736 18045031 -132738522 + AluSx SINE Alu 1 297 -15 859 98 38 15 chr11 18045032 18045164 -132738389 + AluSq/x SINE Alu 1 135 -177 1764 130 63 18 chr11 18045572 18045857 -132737696 + AluSg SINE Alu 1 298 -12 445 209 0 0 chr11 18045957 18046043 -132737510 - MER44D DNA MER2_type -2 607 522 4656 76 11 73 chr11 18046051 18046251 -132737302 - LTR8 LTR ERV1 0 691 480 2190 107 13 7 chr11 18046251 18046560 -132736993 - AluSx SINE Alu 0 312 2 4656 76 11 73 chr11 18046560 18047094 -132736459 - LTR8 LTR ERV1 -211 480 3 4099 113 95 29 chr11 18047100 18047489 -132736064 - Tigger3b DNA MER2_type -1887 1141 779 2166 110 4 0 chr11 18047489 18047798 -132735755 - AluSx SINE Alu 0 310 1 4099 113 95 29 chr11 18047798 18048175 -132735378 - Tigger3b DNA MER2_type -2249 779 315 418 74 0 179 chr11 18048175 18048215 -132735338 + MADE1 DNA Mariner 1 16 -64 2012 122 10 7 chr11 18048215 18048503 -132735050 - AluSq SINE Alu -21 292 4 418 74 0 179 chr11 18048503 18048557 -132734996 + MADE1 DNA Mariner 16 78 -2 4099 113 95 29 chr11 18048557 18048596 -132734957 - Tigger3b DNA MER2_type -2713 315 280 2264 120 3 0 chr11 18048596 18048897 -132734656 + AluSg SINE Alu 3 304 -6 1207 124 0 0 chr11 18048897 18049058 -132734495 + AluSg/x SINE Alu 134 294 -18 836 191 0 8 chr11 18049075 18049199 -132734354 + FRAM SINE Alu 20 144 -168 240 100 0 0 chr11 18049199 18049239 -132734314 + (CA)n Simple_repeat Simple_repeat 1 40 0 320 175 0 0 chr11 18049264 18049321 -132734232 - Tigger3b DNA MER2_type -1131 100 44 475 78 0 0 chr11 18049323 18049387 -132734166 + AluSc SINE Alu 186 249 -60 1298 138 9 23 chr11 18049389 18049606 -132733947 + AluSq SINE Alu 88 301 -12 2060 150 16 25 chr11 18049606 18049972 -132733581 - MER44D DNA MER2_type -187 418 1 1425 178 13 0 chr11 18050083 18050314 -132733239 + AluJb SINE Alu 40 273 -39 236 296 0 28 chr11 18050397 18050468 -132733085 - L2 LINE L2 0 3313 3245 573 318 17 39 chr11 18051223 18051456 -132732097 + MIR SINE MIR 2 229 -33 274 246 102 25 chr11 18051711 18051829 -132731724 + MIR3 SINE MIR 33 159 -49 327 232 69 62 chr11 18052326 18052471 -132731082 + MIR SINE MIR 23 171 -71 522 285 114 19 chr11 18052598 18053057 -132730496 - L2 LINE L2 -251 3062 2555 517 262 14 7 chr11 18053108 18053249 -132730304 - MIR SINE MIR 0 262 121 210 37 0 0 chr11 18053858 18053885 -132729668 + (CA)n Simple_repeat Simple_repeat 2 28 0 291 122 0 0 chr11 18054813 18054862 -132728691 + (CA)n Simple_repeat Simple_repeat 2 50 0 207 0 0 0 chr11 18055126 18055149 -132728404 + (CA)n Simple_repeat Simple_repeat 1 23 0 285 224 32 64 chr11 18055443 18055599 -132727954 + MIR3 SINE MIR 4 154 -54 220 273 15 0 chr11 18056324 18056390 -132727163 + MIR SINE MIR 30 96 -112 294 248 48 0 chr11 18056927 18057032 -132726521 - MIR3 SINE MIR -18 190 81 309 269 28 21 chr11 18057584 18057725 -132725828 + (CA)n Simple_repeat Simple_repeat 1 142 0 377 147 27 0 chr11 18058783 18058858 -132724695 + GA-rich Low_complexity Low_complexity 2 78 0 27 29 0 0 chr11 18059191 18059225 -132724328 + GC_rich Low_complexity Low_complexity 1 34 0 229 246 53 9 chr11 18059532 18059646 -132723907 + (CGGGG)n Simple_repeat Simple_repeat 5 123 0 215 132 26 0 chr11 18059641 18059679 -132723874 + (CCG)n Simple_repeat Simple_repeat 2 40 0 * 22 0 0 0 chr11 18059885 18059907 -132723646 + GC_rich Low_complexity Low_complexity 1 22 0 195 170 0 0 chr11 18060224 18060271 -132723282 + (CA)n Simple_repeat Simple_repeat 2 48 0 202 349 48 16 chr11 18060705 18060831 -132722722 - L2 LINE L2 -1 3271 3142 204 163 0 0 chr11 18061438 18061481 -132722072 + (GCCTG)n Simple_repeat Simple_repeat 3 45 0 411 73 0 0 chr11 18061595 18061650 -132721903 + (CA)n Simple_repeat Simple_repeat 2 56 0 779 259 31 0 chr11 18062819 18063074 -132720479 - L1M4 LINE L1 -1686 4460 4198 191 301 60 12 chr11 18063217 18063300 -132720253 + L3 LINE CR1 1488 1574 -3 316 279 38 89 chr11 18063365 18063521 -132720032 + MLT1L LTR MaLR 8 155 -460 484 226 30 17 chr11 18063521 18063671 -132719882 - MER58 DNA MER1_type 0 2420 63 525 302 69 33 chr11 18063712 18064112 -132719441 + MLT1L LTR MaLR 146 605 -10 253 324 101 7 chr11 18064466 18064605 -132718948 + MIR3 SINE MIR 49 200 -8 666 316 149 36 chr11 18065713 18066723 -132716830 + L2 LINE L2 1746 2870 -444 388 321 30 90 chr11 18066820 18067088 -132716465 + L2 LINE L2 3021 3272 0 304 291 0 68 chr11 18067216 18067319 -132716234 - L1ME LINE L1 -382 5739 5644 290 263 25 59 chr11 18067966 18068084 -132715469 - MIR SINE MIR -72 190 77 6081 168 31 20 chr11 18068226 18069730 -132713823 + L1MC1 LINE L1 4810 6328 -5 916 228 41 98 chr11 18069697 18069785 -132713768 + L1MD2 LINE L1 5152 5243 -1116 * 2268 100 129 5 chr11 18069785 18070166 -132713387 - MSTA LTR MaLR 0 428 1 916 228 41 98 chr11 18070166 18070794 -132712759 + L1MD2 LINE L1 5243 5971 -388 2314 106 0 16 chr11 18070794 18071105 -132712448 + AluSx SINE Alu 1 306 -6 916 228 41 98 chr11 18071105 18071474 -132712079 + L1MD2 LINE L1 5971 6359 0 1850 139 58 4 chr11 18072056 18072372 -132711181 - AluSx SINE Alu 0 331 1 2227 120 3 16 chr11 18073970 18074286 -132709267 + AluSx SINE Alu 1 312 0 1998 143 0 7 chr11 18074931 18075224 -132708329 + AluSc SINE Alu 16 306 -3 787 299 95 7 chr11 18075684 18076020 -132707533 - MIR SINE MIR 0 262 12 590 331 64 21 chr11 18077172 18077547 -132706006 - LTR16C LTR ERVL -2 489 99 425 300 23 8 chr11 18077863 18077993 -132705560 + MIR SINE MIR 47 178 -84 372 289 19 0 chr11 18078868 18078972 -132704581 + MIR3 SINE MIR 65 170 -38 555 295 46 25 chr11 18079740 18079977 -132703576 - MIR SINE MIR -13 249 8 357 274 9 9 chr11 18080271 18080377 -132703176 + MIR SINE MIR 38 143 -65 2364 257 45 49 chr11 18081953 18083035 -132700518 + L2 LINE L2 2203 3276 -37 335 172 0 0 chr11 18083581 18083639 -132699914 - MLT1E2 LTR MaLR -3 651 594 3513 161 35 18 chr11 18083645 18084324 -132699229 + L1MB7 LINE L1 5397 6087 -97 1647 241 125 13 chr11 18084324 18084868 -132698685 - MLT1E2 LTR MaLR -10 616 12 182 323 15 15 chr11 18085001 18085066 -132698487 + L2 LINE L2 3201 3265 -7 292 250 25 25 chr11 18085633 18085713 -132697840 - L2 LINE L2 0 3272 3193 1279 211 204 15 chr11 18085726 18086182 -132697371 + MLT1F LTR MaLR 1 542 0 248 360 50 14 chr11 18086703 18086842 -132696711 + L3 LINE CR1 151 294 -1283 589 284 90 5 chr11 18087122 18087344 -132696209 - MIR SINE MIR -2 260 20 243 286 0 29 chr11 18088062 18088132 -132695421 - MIR3 SINE MIR -32 176 109 214 330 6 22 chr11 18088588 18088767 -132694786 + G-rich Low_complexity Low_complexity 2 177 0 266 210 290 0 chr11 18089638 18089738 -132693815 + L2 LINE L2 2924 3052 -220 593 317 24 5 chr11 18090347 18090552 -132693001 - MIR SINE MIR -4 258 50 210 320 40 10 chr11 18090586 18090686 -132692867 + L2 LINE L2 3089 3191 -81 569 220 99 7 chr11 18090754 18090895 -132692658 + MIR SINE MIR 4 157 -105 306 157 43 14 chr11 18091635 18091705 -132691848 + L2 LINE L2 3239 3310 -3 477 217 167 0 chr11 18093066 18093186 -132690367 + MIR SINE MIR 49 188 -74 276 295 62 0 chr11 18093620 18093732 -132689821 - MIR SINE MIR -3 259 141 919 257 164 55 chr11 18093732 18094226 -132689327 + MLT1H LTR MaLR 1 548 -1 2389 143 16 21 chr11 18094238 18094673 -132688880 - L1MC1 LINE L1 -5 6328 5896 369 0 0 0 chr11 18094942 18094983 -132688570 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1505 146 9 131 chr11 18095001 18095322 -132688231 - AluJo SINE Alu -30 282 1 446 273 21 105 chr11 18095333 18095422 -132688131 - MIR SINE MIR -17 245 150 1799 155 14 14 chr11 18095422 18095739 -132687814 - AluJb SINE Alu 0 317 1 446 273 21 105 chr11 18095739 18095886 -132687667 - MIR SINE MIR -112 150 28 1319 243 53 49 chr11 18096260 18096406 -132687147 - MLT1J LTR MaLR -72 439 295 2151 184 108 17 chr11 18096406 18096867 -132686686 - MLT1D LTR MaLR 0 505 3 1319 243 53 49 chr11 18096867 18097073 -132686480 - MLT1J LTR MaLR -216 295 82 1730 191 34 16 chr11 18097073 18097456 -132686097 + MLT1B LTR MaLR 1 390 0 1319 243 53 49 chr11 18097456 18097534 -132686019 - MLT1J LTR MaLR -429 82 6 257 229 279 25 chr11 18097657 18097779 -132685774 - MIR SINE MIR 0 262 110 213 254 82 36 chr11 18097834 18097944 -132685609 - L2 LINE L2 -223 3049 2935 1081 356 71 29 chr11 18098007 18099022 -132684531 - L2 LINE L2 -472 2842 1785 1242 202 77 75 chr11 18099042 18099198 -132684355 + L1MC5 LINE L1 7240 7394 -567 2281 51 0 11 chr11 18099198 18099499 -132684054 + AluY SINE Alu 14 311 0 1242 202 77 75 chr11 18099499 18099871 -132683682 + L1MC5 LINE L1 7394 7770 -191 599 271 52 18 chr11 18099873 18100102 -132683451 + L1MC5 LINE L1 7677 7913 -48 266 249 4 21 chr11 18100563 18100679 -132682874 + MIR SINE MIR 37 149 -79 438 310 97 9 chr11 18101118 18101334 -132682219 - MIR SINE MIR 0 262 28 344 319 30 0 chr11 18101769 18101904 -132681649 - MIR3 SINE MIR -54 154 16 351 325 57 57 chr11 18102076 18102432 -132681121 + L2 LINE L2 2905 3258 -14 253 296 25 37 chr11 18104917 18104998 -132678555 - L3b LINE CR1 -209 1374 1295 2170 107 0 29 chr11 18105795 18106103 -132677450 + AluSx SINE Alu 1 299 -13 235 256 26 13 chr11 18106179 18106257 -132677296 + L2 LINE L2 3173 3251 -21 733 253 65 80 chr11 18106263 18106599 -132676954 + L2 LINE L2 2947 3277 -36 299 200 0 57 chr11 18108376 18108446 -132675107 - L2 LINE L2 0 3313 3248 933 357 99 8 chr11 18108789 18109519 -132674034 - L2 LINE L2 0 3313 2513 1366 248 210 23 chr11 18109531 18110409 -132673144 + L2 LINE L2 2252 3299 -14 239 323 63 31 chr11 18111129 18111256 -132672297 - MIR SINE MIR -78 184 54 27 29 0 0 chr11 18113028 18113062 -132670491 + GC_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr11 18113620 18113649 -132669904 + GC_rich Low_complexity Low_complexity 1 29 0 393 236 0 87 chr11 18115096 18115223 -132668330 - MER5B DNA MER1_type -59 119 4 272 244 22 44 chr11 18115609 18115699 -132667854 - L2 LINE L2 -188 3084 2997 267 31 0 0 chr11 18115716 18115748 -132667805 + (CA)n Simple_repeat Simple_repeat 1 32 0 250 334 128 43 chr11 18116184 18116792 -132666761 - L2 LINE L2 -40 3232 2581 * 331 356 15 30 chr11 18116785 18116987 -132666566 - L2 LINE L2 -38 3275 3077 716 244 28 6 chr11 18117048 18117228 -132666325 - MER91A DNA MER1_type -1 195 12 2200 106 0 4 chr11 18117675 18117950 -132665603 + AluSg SINE Alu 6 279 -31 237 254 17 0 chr11 18118012 18118071 -132665482 - MIR SINE MIR -195 67 8 827 244 159 7 chr11 18118396 18118667 -132664886 + MER69 DNA AcHobo 1 312 -2214 2886 189 14 12 chr11 18118668 18119320 -132664233 + MER69 DNA AcHobo 1611 2263 -263 265 365 103 0 chr11 18119709 18119854 -132663699 + MIR3 SINE MIR 48 207 -1 4039 182 48 40 chr11 18120017 18120352 -132663201 - L1MB7 LINE L1 -19 6165 5834 2400 91 7 0 chr11 18120352 18120650 -132662903 - AluSx SINE Alu -12 300 1 4039 182 48 40 chr11 18120650 18121192 -132662361 - L1MB7 LINE L1 -350 5834 5298 1944 122 35 40 chr11 18121192 18121569 -132661984 + THE1C LTR MaLR 1 375 0 4039 182 48 40 chr11 18121569 18122182 -132661371 - L1MB7 LINE L1 -886 5298 4656 982 208 29 0 chr11 18122475 18122716 -132660837 + MER69 DNA AcHobo 2279 2526 0 246 277 72 0 chr11 18123241 18123324 -132660229 - MIR SINE MIR -75 133 45 945 170 40 58 chr11 18123332 18123555 -132659998 + MER20 DNA MER1_type 1 219 0 730 195 13 20 chr11 18124235 18124384 -132659169 - MIR SINE MIR -102 160 13 432 55 0 0 chr11 18125593 18125648 -132657905 + (TG)n Simple_repeat Simple_repeat 2 56 0 183 186 0 0 chr11 18125762 18125805 -132657748 + (CAGGC)n Simple_repeat Simple_repeat 3 45 0 202 349 48 16 chr11 18126412 18126538 -132657015 + L2 LINE L2 3142 3271 -1 396 0 0 0 chr11 18126970 18127014 -132656539 + (TG)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr11 18127331 18127353 -132656200 + GC_rich Low_complexity Low_complexity 1 22 0 215 132 26 0 chr11 18127559 18127597 -132655956 + (CGG)n Simple_repeat Simple_repeat 2 40 0 206 237 35 35 chr11 18127592 18127706 -132655847 + (CCCCG)n Simple_repeat Simple_repeat 5 118 0 * 666 316 149 36 chr11 18329504 18330514 -132453039 + L2 LINE L2 1746 2870 -444 388 321 30 90 chr11 18330611 18330879 -132452674 + L2 LINE L2 3021 3272 0 304 291 0 68 chr11 18331007 18331110 -132452443 - L1ME LINE L1 -382 5739 5644 290 263 25 59 chr11 18331757 18331875 -132451678 - MIR SINE MIR -72 190 77 6076 168 31 20 chr11 18332017 18333521 -132450032 + L1MC1 LINE L1 4810 6328 -5 916 228 41 98 chr11 18333488 18333576 -132449977 + L1MD2 LINE L1 5152 5243 -1116 * 2268 100 129 5 chr11 18333576 18333957 -132449596 - MSTA LTR MaLR 0 428 1 916 228 41 98 chr11 18333957 18334585 -132448968 + L1MD2 LINE L1 5243 5971 -388 2298 109 0 16 chr11 18334585 18334896 -132448657 + AluSx SINE Alu 1 306 -6 916 228 41 98 chr11 18334896 18335265 -132448288 + L1MD2 LINE L1 5971 6359 0 1864 135 58 4 chr11 18335847 18336163 -132447390 - AluSx SINE Alu 0 331 1 2227 120 3 16 chr11 18337761 18338077 -132445476 + AluSx SINE Alu 1 312 0 1998 143 0 7 chr11 18338722 18339015 -132444538 + AluSc SINE Alu 16 306 -3 787 299 95 7 chr11 18339475 18339811 -132443742 - MIR SINE MIR 0 262 12 590 331 64 21 chr11 18340959 18341334 -132442219 - LTR16C LTR ERVL -2 489 99 425 300 23 8 chr11 18341650 18341780 -132441773 + MIR SINE MIR 47 178 -84 372 289 19 0 chr11 18342655 18342759 -132440794 + MIR3 SINE MIR 65 170 -38 555 295 46 25 chr11 18343527 18343764 -132439789 - MIR SINE MIR -13 249 8 357 274 9 9 chr11 18344058 18344164 -132439389 + MIR SINE MIR 38 143 -65 2364 257 45 49 chr11 18345740 18346822 -132436731 + L2 LINE L2 2203 3276 -37 335 172 0 0 chr11 18347368 18347426 -132436127 - MLT1E2 LTR MaLR -3 651 594 3513 161 35 18 chr11 18347432 18348111 -132435442 + L1MB7 LINE L1 5397 6087 -97 1647 241 125 13 chr11 18348111 18348655 -132434898 - MLT1E2 LTR MaLR -10 616 12 182 323 15 15 chr11 18348788 18348853 -132434700 + L2 LINE L2 3201 3265 -7 292 250 25 25 chr11 18349420 18349500 -132434053 - L2 LINE L2 0 3272 3193 1279 211 204 15 chr11 18349513 18349969 -132433584 + MLT1F LTR MaLR 1 542 0 248 360 50 14 chr11 18350490 18350629 -132432924 + L3 LINE CR1 151 294 -1283 597 293 86 0 chr11 18350909 18351131 -132432422 - MIR SINE MIR -2 260 20 243 286 0 29 chr11 18351849 18351919 -132431634 - MIR3 SINE MIR -32 176 109 214 330 6 22 chr11 18352375 18352554 -132430999 + G-rich Low_complexity Low_complexity 2 177 0 266 210 290 0 chr11 18353426 18353526 -132430027 + L2 LINE L2 2924 3052 -220 593 317 24 5 chr11 18354135 18354340 -132429213 - MIR SINE MIR -4 258 50 210 320 40 10 chr11 18354374 18354474 -132429079 + L2 LINE L2 3089 3191 -81 569 220 99 7 chr11 18354542 18354683 -132428870 + MIR SINE MIR 4 157 -105 306 157 43 14 chr11 18355423 18355493 -132428060 + L2 LINE L2 3239 3310 -3 477 217 167 0 chr11 18356854 18356974 -132426579 + MIR SINE MIR 49 188 -74 276 295 62 0 chr11 18357408 18357520 -132426033 - MIR SINE MIR -3 259 141 944 255 164 55 chr11 18357520 18358014 -132425539 + MLT1H LTR MaLR 1 548 -1 2401 140 16 21 chr11 18358026 18358461 -132425092 - L1MC1 LINE L1 -5 6328 5896 369 0 0 0 chr11 18358730 18358771 -132424782 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1505 146 9 131 chr11 18358789 18359110 -132424443 - AluJo SINE Alu -30 282 1 446 273 21 105 chr11 18359121 18359210 -132424343 - MIR SINE MIR -17 245 150 1799 155 14 14 chr11 18359210 18359527 -132424026 - AluJb SINE Alu 0 317 1 446 273 21 105 chr11 18359527 18359674 -132423879 - MIR SINE MIR -112 150 28 1319 243 53 49 chr11 18360048 18360194 -132423359 - MLT1J LTR MaLR -72 439 295 2151 184 108 17 chr11 18360194 18360655 -132422898 - MLT1D LTR MaLR 0 505 3 1319 243 53 49 chr11 18360655 18360861 -132422692 - MLT1J LTR MaLR -216 295 82 1730 191 34 16 chr11 18360861 18361244 -132422309 + MLT1B LTR MaLR 1 390 0 1319 243 53 49 chr11 18361244 18361322 -132422231 - MLT1J LTR MaLR -429 82 6 257 229 279 25 chr11 18361445 18361567 -132421986 - MIR SINE MIR 0 262 110 213 254 82 36 chr11 18361622 18361732 -132421821 - L2 LINE L2 -223 3049 2935 1081 356 71 29 chr11 18361795 18362810 -132420743 - L2 LINE L2 -472 2842 1785 1242 202 77 75 chr11 18362830 18362986 -132420567 + L1MC5 LINE L1 7240 7394 -567 2281 51 0 11 chr11 18362986 18363287 -132420266 + AluY SINE Alu 14 311 0 1242 202 77 75 chr11 18363287 18363659 -132419894 + L1MC5 LINE L1 7394 7770 -191 599 271 52 18 chr11 18363661 18363890 -132419663 + L1MC5 LINE L1 7677 7913 -48 266 249 4 21 chr11 18364351 18364467 -132419086 + MIR SINE MIR 37 149 -79 438 310 97 9 chr11 18364906 18365122 -132418431 - MIR SINE MIR 0 262 28 344 319 30 0 chr11 18365557 18365692 -132417861 - MIR3 SINE MIR -54 154 16 351 325 57 57 chr11 18365864 18366220 -132417333 + L2 LINE L2 2905 3258 -14 253 296 25 37 chr11 18368705 18368786 -132414767 - L3b LINE CR1 -209 1374 1295 2170 107 0 29 chr11 18369583 18369891 -132413662 + AluSx SINE Alu 1 299 -13 235 256 26 13 chr11 18369967 18370045 -132413508 + L2 LINE L2 3173 3251 -21 733 253 65 80 chr11 18370051 18370387 -132413166 + L2 LINE L2 2947 3277 -36 299 200 0 57 chr11 18372164 18372234 -132411319 - L2 LINE L2 0 3313 3248 933 357 99 8 chr11 18372577 18373307 -132410246 - L2 LINE L2 0 3313 2513 1357 249 210 23 chr11 18373319 18374197 -132409356 + L2 LINE L2 2252 3299 -14 239 323 63 31 chr11 18374917 18375044 -132408509 - MIR SINE MIR -78 184 54 27 29 0 0 chr11 18376816 18376850 -132406703 + GC_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr11 18377408 18377437 -132406116 + GC_rich Low_complexity Low_complexity 1 29 0 393 236 0 87 chr11 18378884 18379011 -132404542 - MER5B DNA MER1_type -59 119 4 272 244 22 44 chr11 18379397 18379487 -132404066 - L2 LINE L2 -188 3084 2997 267 31 0 0 chr11 18379504 18379536 -132404017 + (CA)n Simple_repeat Simple_repeat 1 32 0 313 332 123 34 chr11 18379972 18380580 -132402973 - L2 LINE L2 -40 3232 2581 * 359 380 18 22 chr11 18380573 18380799 -132402754 - L2 LINE L2 -38 3275 3051 743 244 28 6 chr11 18380836 18381016 -132402537 - MER91A DNA MER1_type -1 195 12 2098 106 0 4 chr11 18381463 18381738 -132401815 + AluSg SINE Alu 6 279 -31 257 254 17 0 chr11 18381800 18381859 -132401694 - MIR SINE MIR -195 67 8 735 244 159 7 chr11 18382184 18382455 -132401098 + MER69 DNA AcHobo 1 312 -2214 2691 189 14 12 chr11 18382456 18383108 -132400445 + MER69 DNA AcHobo 1611 2263 -263 273 323 72 30 chr11 18383493 18383660 -132399893 + MIR3 SINE MIR 43 207 -1 3776 184 47 38 chr11 18383805 18384138 -132399415 - L1MB7 LINE L1 -19 6165 5837 2273 94 7 0 chr11 18384138 18384437 -132399116 - AluSx SINE Alu -11 301 1 3776 184 47 38 chr11 18384437 18384979 -132398574 - L1MB7 LINE L1 -347 5837 5301 2121 122 35 40 chr11 18384979 18385356 -132398197 + THE1C LTR MaLR 1 375 0 3776 184 47 38 chr11 18385356 18385969 -132397584 - L1MB7 LINE L1 -883 5301 4656 916 208 29 0 chr11 18386262 18386503 -132397050 + MER69 DNA AcHobo 2279 2526 0 268 281 64 29 chr11 18387009 18387118 -132396435 - MIR SINE MIR -64 144 34 1047 170 40 58 chr11 18387119 18387342 -132396211 + MER20 DNA MER1_type 1 219 0 729 218 13 19 chr11 18388015 18388171 -132395382 - MIR SINE MIR -95 167 13 432 55 0 0 chr11 18389380 18389435 -132394118 + (TG)n Simple_repeat Simple_repeat 2 56 0 183 186 0 0 chr11 18389549 18389592 -132393961 + (CAGGC)n Simple_repeat Simple_repeat 3 45 0 233 349 48 16 chr11 18390199 18390325 -132393228 + L2 LINE L2 3142 3271 -1 432 0 0 0 chr11 18390757 18390805 -132392748 + (TG)n Simple_repeat Simple_repeat 2 49 0 22 0 0 0 chr11 18391122 18391144 -132392409 + GC_rich Low_complexity Low_complexity 1 22 0 215 132 26 0 chr11 18391350 18391388 -132392165 + (CGG)n Simple_repeat Simple_repeat 2 40 0 * 229 246 53 9 chr11 18391383 18391497 -132392056 + (CCCCG)n Simple_repeat Simple_repeat 5 123 0 27 29 0 0 chr11 18391804 18391838 -132391715 + GC_rich Low_complexity Low_complexity 1 34 0 377 147 27 0 chr11 18392171 18392246 -132391307 + CT-rich Low_complexity Low_complexity 2 78 0 309 269 28 21 chr11 18393304 18393445 -132390108 + (TG)n Simple_repeat Simple_repeat 1 142 0 329 248 48 0 chr11 18393997 18394102 -132389451 + MIR3 SINE MIR 81 190 -18 236 286 14 0 chr11 18394635 18394705 -132388848 - MIR SINE MIR -108 100 30 359 231 32 64 chr11 18395430 18395586 -132387967 - MIR3 SINE MIR -54 154 4 261 0 0 0 chr11 18395880 18395909 -132387644 + (TG)n Simple_repeat Simple_repeat 1 29 0 273 128 0 0 chr11 18396173 18396220 -132387333 + (TG)n Simple_repeat Simple_repeat 2 48 0 210 37 0 0 chr11 18397148 18397175 -132386378 + (TG)n Simple_repeat Simple_repeat 2 28 0 554 262 14 7 chr11 18397784 18397925 -132385628 + MIR SINE MIR 121 262 0 663 294 112 17 chr11 18397976 18398435 -132385118 + L2 LINE L2 2555 3062 -251 354 232 69 62 chr11 18398562 18398707 -132384846 - MIR SINE MIR -71 137 23 278 280 85 8 chr11 18399204 18399322 -132384231 - MIR3 SINE MIR -49 159 33 613 321 28 36 chr11 18399561 18399810 -132383743 - MIR SINE MIR -14 248 2 460 346 0 0 chr11 18400615 18400745 -132382808 + MIR3 SINE MIR 76 205 -3 485 245 192 0 chr11 18401499 18401650 -132381903 + MER5A DNA MER1_type 10 189 0 1142 285 160 11 chr11 18401794 18402575 -132380978 + L2 LINE L2 2399 3313 0 244 268 0 28 chr11 18403011 18403082 -132380471 + C-rich Low_complexity Low_complexity 1 69 0 748 259 132 0 chr11 18403295 18403507 -132380046 + MIR SINE MIR 20 259 -3 284 240 94 0 chr11 18403693 18403789 -132379764 + MIR SINE MIR 33 137 -71 716 258 253 21 chr11 18404505 18404885 -132378668 - L2 LINE L2 0 3313 2846 670 227 29 19 chr11 18404909 18405116 -132378437 + L1PB4 LINE L1 5948 6156 0 591 228 129 18 chr11 18405574 18405745 -132377808 + MIR SINE MIR 6 195 -67 263 350 50 14 chr11 18406269 18406409 -132377144 + MIR SINE MIR 40 184 -78 429 286 110 18 chr11 18406517 18406738 -132376815 + MIR SINE MIR 11 254 -8 206 311 53 67 chr11 18407126 18407335 -132376218 + L2 LINE L2 2853 3058 -214 305 279 22 59 chr11 18407536 18407672 -132375881 - MIR SINE MIR -91 171 41 190 347 21 42 chr11 18407655 18407750 -132375803 + MIR3 SINE MIR 115 207 -1 * 421 288 0 31 chr11 18407782 18407942 -132375611 + (TGGA)n Simple_repeat Simple_repeat 4 158 0 706 275 62 25 chr11 18409132 18409372 -132374181 + MIR SINE MIR 8 256 -6 276 176 0 0 chr11 18409448 18409499 -132374054 + L2 LINE L2 3222 3272 0 285 271 30 68 chr11 18409638 18409771 -132373782 - MIR3 SINE MIR -16 192 65 252 241 48 12 chr11 18411233 18411316 -132372237 - L2 LINE L2 -101 3212 3127 192 267 58 35 chr11 18411348 18411434 -132372119 + MIR SINE MIR 47 134 -128 3022 268 93 20 chr11 18411474 18412609 -132370944 - L2 LINE L2 -160 3153 1934 368 278 77 98 chr11 18412620 18412947 -132370606 + L2 LINE L2 2948 3267 -5 348 24 0 0 chr11 18413028 18413069 -132370484 + (CA)n Simple_repeat Simple_repeat 2 42 0 539 240 120 26 chr11 18413405 18413597 -132369956 + MIR SINE MIR 3 212 -50 510 351 89 29 chr11 18413783 18414099 -132369454 + L3 LINE CR1 1179 1513 -64 17095 99 21 6 chr11 18414118 18416500 -132367053 - Tigger1 DNA MER2_type 0 2418 1 302 344 84 0 chr11 18417287 18417418 -132366135 + MIR SINE MIR 84 225 -37 321 319 84 0 chr11 18418038 18418157 -132365396 - MIR SINE MIR -64 144 16 198 341 47 12 chr11 18418262 18418347 -132365206 + MER5A DNA MER1_type 27 114 -75 253 254 105 26 chr11 18418981 18419095 -132364458 - MIR3 SINE MIR -78 130 8 418 204 27 0 chr11 18419966 18420231 -132363322 + (CA)n Simple_repeat Simple_repeat 1 272 0 240 150 38 0 chr11 18420246 18420326 -132363227 + (CA)n Simple_repeat Simple_repeat 1 83 0 534 189 29 14 chr11 18420373 18420806 -132362747 + (CA)n Simple_repeat Simple_repeat 1 439 0 370 257 35 0 chr11 18421599 18421712 -132361841 - MIR3 SINE MIR -32 176 60 1857 74 7 52 chr11 18423383 18423654 -132359899 + AluSx SINE Alu 39 297 -15 1133 113 65 0 chr11 18423654 18423822 -132359731 + AluSg/x SINE Alu 134 312 0 337 338 68 0 chr11 18423840 18423973 -132359580 + MIR SINE MIR 47 188 -74 263 373 41 32 chr11 18424689 18424992 -132358561 - L2 LINE L2 -208 3064 2751 282 282 0 0 chr11 18425825 18425956 -132357597 + GA-rich Low_complexity Low_complexity 1 131 0 221 245 0 0 chr11 18425956 18426038 -132357515 + GA-rich Low_complexity Low_complexity 1 82 0 809 153 0 29 chr11 18426067 18426193 -132357360 + FLAM_C SINE Alu 1 124 -188 180 97 0 0 chr11 18426193 18426224 -132357329 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 210 143 0 0 chr11 18426235 18426270 -132357283 + (GGAA)n Simple_repeat Simple_repeat 4 38 0 308 295 18 18 chr11 18426370 18426482 -132357071 + MIR3 SINE MIR 91 202 -6 443 322 20 14 chr11 18427347 18427493 -132356060 - L3 LINE CR1 -4 1573 1427 597 254 183 0 chr11 18427766 18428006 -132355547 - MLT1J2 LTR MaLR -9 441 158 24 0 0 0 chr11 18438445 18438469 -132345084 + AT_rich Low_complexity Low_complexity 1 24 0 309 319 22 14 chr11 18440216 18440354 -132343199 - MIR3 SINE MIR -2 206 68 457 242 50 0 chr11 18440838 18440963 -132342590 - MIR SINE MIR -45 163 28 246 385 35 7 chr11 18441968 18442111 -132341442 - L2 LINE L2 -4 3268 3122 217 330 0 52 chr11 18443178 18443275 -132340278 + MIR3 SINE MIR 85 176 -32 781 288 142 30 chr11 18445170 18445932 -132337621 + L2 LINE L2 2458 3309 -4 186 258 81 16 chr11 18445943 18446005 -132337548 - MIR SINE MIR -169 93 28 325 337 51 28 chr11 18446090 18446268 -132337285 - L1ME4a LINE L1 -4 6117 5936 1202 153 0 20 chr11 18446328 18446524 -132337029 + AluSg/x SINE Alu 121 312 0 364 279 76 98 chr11 18446795 18447599 -132335954 - L1ME4a LINE L1 -217 5953 5174 805 301 44 44 chr11 18447609 18448104 -132335449 - L1ME LINE L1 -299 5822 5328 1007 233 55 28 chr11 18448112 18448365 -132335188 + MIR SINE MIR 3 262 0 291 235 23 42 chr11 18449159 18449295 -132334258 - MIR SINE MIR -49 213 23 545 227 227 6 chr11 18449315 18449491 -132334062 - MER58C DNA MER1_type 0 215 1 498 267 81 68 chr11 18450643 18450879 -132332674 + MLT1J LTR MaLR 94 332 -179 460 201 106 7 chr11 18450907 18451047 -132332506 - MIR SINE MIR -65 143 33 701 263 140 0 chr11 18451076 18451304 -132332249 - MIR SINE MIR 0 262 3 191 372 74 0 chr11 18452217 18452338 -132331215 - L2 LINE L2 -25 3247 3118 233 313 36 36 chr11 18452354 18452466 -132331087 + L1MC/D LINE L1 5668 5779 -2029 1971 145 83 19 chr11 18452839 18453211 -132330342 + MSTD LTR MaLR 1 396 0 1237 259 184 7 chr11 18453572 18454235 -132329318 + L2 LINE L2 2529 3312 -1 205 246 15 15 chr11 18454738 18454803 -132328750 - MIR SINE MIR -56 152 88 254 328 119 0 chr11 18455262 18455396 -132328157 - MIR SINE MIR -6 256 107 246 412 101 0 chr11 18455662 18455958 -132327595 - L3 LINE CR1 -460 1117 792 825 181 23 29 chr11 18456667 18456975 -132326578 - L1MC1 LINE L1 -1 6332 5993 1148 288 127 22 chr11 18457005 18457421 -132326132 - L2 LINE L2 -16 3297 2926 2710 45 0 0 chr11 18457421 18457730 -132325823 + AluY SINE Alu 1 309 -2 1148 288 127 22 chr11 18457730 18458190 -132325363 - L2 LINE L2 -387 2926 2316 1408 217 98 41 chr11 18458991 18459532 -132324021 + L2 LINE L2 2737 3312 -1 237 313 263 6 chr11 18459966 18460145 -132323408 + MIR SINE MIR 32 256 -6 180 77 0 0 chr11 18460986 18461012 -132322541 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 251 292 42 71 chr11 18461077 18461245 -132322308 + MIR SINE MIR 100 262 0 587 276 29 12 chr11 18461683 18461853 -132321700 + MIR3 SINE MIR 30 202 -6 183 409 9 27 chr11 18462045 18462155 -132321398 - MIR SINE MIR -80 128 21 250 323 47 16 chr11 18462207 18462334 -132321219 + MIR SINE MIR 16 146 -62 485 326 77 9 chr11 18462847 18463080 -132320473 - MIR SINE MIR -2 260 12 2661 135 17 7 chr11 18464709 18465131 -132318422 - MSTB LTR MaLR 0 426 1 242 337 30 10 chr11 18465873 18465974 -132317579 - L2 LINE L2 -527 2787 2685 180 277 0 0 chr11 18466017 18466064 -132317489 - MIR SINE MIR -11 251 205 261 263 11 42 chr11 18466958 18467053 -132316500 - MIR3 SINE MIR -8 200 109 192 227 127 73 chr11 18467137 18467247 -132316306 + L2 LINE L2 3138 3253 -19 473 349 12 0 chr11 18467624 18467790 -132315763 - MIR3 SINE MIR -24 184 17 310 291 0 0 chr11 18468397 18468476 -132315077 + L2 LINE L2 3235 3313 0 232 253 11 46 chr11 18469244 18469331 -132314222 + L2 LINE L2 3229 3312 -1 449 265 25 107 chr11 18469564 18469760 -132313793 + MIR SINE MIR 37 216 -46 311 361 70 0 chr11 18469786 18469941 -132313612 - MIR3 SINE MIR -66 142 2 1736 146 191 13 chr11 18470628 18471006 -132312547 + MLT2C2 LTR ERVL 1 445 -19 259 163 0 0 chr11 18471029 18471072 -132312481 + MLT2C2 LTR ERVL 422 464 0 265 232 21 53 chr11 18471085 18471180 -132312373 - MIR SINE MIR -54 208 117 1819 157 0 27 chr11 18471415 18471715 -132311838 + AluJo SINE Alu 11 302 -10 2149 91 0 54 chr11 18471824 18472146 -132311407 + AluSx SINE Alu 1 306 0 2427 88 7 0 chr11 18472149 18472456 -132311097 + AluSc SINE Alu 1 309 0 892 209 4 74 chr11 18473646 18473721 -132309832 - MIR SINE MIR 0 262 183 2490 70 0 13 chr11 18473721 18474023 -132309530 - AluY SINE Alu -13 298 1 892 209 4 74 chr11 18474023 18474191 -132309362 - MIR SINE MIR -79 183 36 352 276 126 0 chr11 18474195 18474322 -132309231 - MIR SINE MIR -71 191 49 285 296 22 52 chr11 18474747 18474882 -132308671 + MIR SINE MIR 65 195 -67 590 286 92 21 chr11 18474897 18475138 -132308415 - MIR SINE MIR -10 252 4 311 332 80 25 chr11 18475167 18475532 -132308021 + L2 LINE L2 2659 3090 -182 382 282 167 0 chr11 18475890 18476101 -132307452 - MIR3 SINE MIR 0 262 3 1917 140 16 32 chr11 18476337 18476651 -132306902 - AluJb SINE Alu -3 309 1 611 254 30 18 chr11 18476937 18477106 -132306447 + MIR SINE MIR 2 172 -90 1079 229 108 39 chr11 18477137 18477469 -132306084 + MLT1D LTR MaLR 1 355 -150 777 203 101 65 chr11 18477521 18477797 -132305756 + MLT1C LTR MaLR 164 449 -18 346 361 16 0 chr11 18477915 18478037 -132305516 + L2 LINE L2 3190 3313 0 457 252 44 31 chr11 18478040 18478199 -132305354 + L2 LINE L2 2891 3051 -221 293 260 83 0 chr11 18479236 18479332 -132304221 - MIR SINE MIR -102 160 57 3109 164 38 23 chr11 18479338 18479946 -132303607 - L1MC3 LINE L1 -8 7777 7161 844 259 92 76 chr11 18480310 18480527 -132303026 + MLT1J LTR MaLR 1 213 -298 2668 37 0 0 chr11 18480527 18480822 -132302731 + AluY SINE Alu 1 295 -16 844 259 92 76 chr11 18480822 18481020 -132302533 + MLT1J LTR MaLR 213 426 -85 1796 164 41 41 chr11 18481020 18481410 -132302143 - MLT1B LTR MaLR 0 390 1 844 259 92 76 chr11 18481410 18481452 -132302101 + MLT1J LTR MaLR 426 466 -45 450 256 43 34 chr11 18481616 18481733 -132301820 - L2 LINE L2 -1 3271 3154 321 208 100 83 chr11 18482437 18482557 -132300996 + MIR SINE MIR 49 170 -92 301 248 109 0 chr11 18482607 18482708 -132300845 - MIR SINE MIR 0 262 151 986 154 17 0 chr11 18483038 18483213 -132300340 + L1MB3 LINE L1 5997 6174 -9 252 232 0 59 chr11 18483439 18483533 -132300020 - MIR SINE MIR -108 100 14 406 284 55 8 chr11 18485616 18485743 -132297810 + MIR SINE MIR 7 139 -123 287 282 218 21 chr11 18485774 18485916 -132297637 - MER5A DNA MER1_type -10 179 10 304 178 27 55 chr11 18486711 18486784 -132296769 + L2 LINE L2 3201 3271 -1 978 203 72 23 chr11 18486870 18487034 -132296519 - MSTD LTR MaLR 0 396 241 1023 117 0 0 chr11 18487034 18487196 -132296357 + (GA)n Simple_repeat Simple_repeat 2 163 0 978 203 72 23 chr11 18487196 18487366 -132296187 - MSTD LTR MaLR -155 241 1 555 264 25 6 chr11 18487621 18487780 -132295773 - MER5A DNA MER1_type -9 180 19 311 236 36 55 chr11 18488528 18488638 -132294915 + MIR SINE MIR 36 143 -65 2145 120 48 34 chr11 18488640 18488998 -132294555 + THE1B LTR MaLR 2 364 0 11520 84 21 16 chr11 18488998 18490564 -132292989 + THE1B-int LTR MaLR 1 1574 -6 2078 129 47 47 chr11 18490569 18490933 -132292620 + THE1B LTR MaLR 1 364 0 227 286 0 0 chr11 18490936 18490985 -132292568 + L3 LINE CR1 1518 1566 -11 292 235 163 0 chr11 18491414 18491512 -132292041 + L2 LINE L2 3156 3269 -3 329 362 32 27 chr11 18491981 18492169 -132291384 + L2 LINE L2 3081 3269 -3 379 269 11 0 chr11 18492588 18492681 -132290872 - L2 LINE L2 -2 3270 3177 271 233 0 0 chr11 18492919 18492979 -132290574 + MER117 DNA MER1_type 74 133 -64 276 292 174 66 chr11 18493133 18493496 -132290057 + L2 LINE L2 2871 3272 0 2401 116 41 46 chr11 18493823 18494163 -132289390 + MSTB1 LTR MaLR 21 360 -72 2231 97 0 26 chr11 18494163 18494472 -132289081 - AluSg SINE Alu -9 301 1 2401 116 41 46 chr11 18494472 18494545 -132289008 + MSTB1 LTR MaLR 360 432 0 436 301 46 0 chr11 18494995 18495148 -132288405 - MIR SINE MIR -6 256 97 336 291 35 14 chr11 18495135 18495276 -132288277 + MIR SINE MIR 93 236 -26 * 200 245 0 0 chr11 18495314 18495363 -132288190 - MIR SINE MIR -156 106 58 287 340 1 47 chr11 18495403 18495573 -132287980 + MIR SINE MIR 40 200 -59 385 260 104 26 chr11 18496291 18496445 -132287108 - MIR SINE MIR -66 196 31 240 236 211 0 chr11 18496509 18496632 -132286921 - L3 LINE CR1 -3 1574 1426 843 305 78 66 chr11 18497739 18498736 -132284817 + L2 LINE L2 2302 3311 -2 369 275 179 34 chr11 18498941 18499148 -132284405 - MIR SINE MIR -11 251 15 547 303 56 17 chr11 18499853 18500087 -132283466 - MIR SINE MIR -18 244 2 322 302 48 24 chr11 18500189 18500315 -132283238 - L2 LINE L2 -5 3267 3139 279 268 71 77 chr11 18500425 18500593 -132282960 - MER5A DNA MER1_type -11 167 1 * 292 273 0 0 chr11 18500593 18500667 -132282886 - MIR3 SINE MIR -53 155 82 32 57 0 0 chr11 18500720 18500773 -132282780 + AT_rich Low_complexity Low_complexity 1 53 0 1015 114 228 0 chr11 18501316 18501406 -132282147 + MER30 DNA MER1_type 1 69 -161 240 43 65 0 chr11 18501406 18501452 -132282101 + A-rich Low_complexity Low_complexity 2 50 0 1015 114 228 0 chr11 18501452 18501545 -132282008 + MER30 DNA MER1_type 69 226 -4 192 333 0 10 chr11 18501845 18501941 -132281612 - L2 LINE L2 -1231 2083 1989 258 284 33 95 chr11 18501945 18502156 -132281397 + MIR3 SINE MIR 4 201 -7 202 235 102 92 chr11 18502225 18502323 -132281230 - MIR3 SINE MIR -1 207 109 234 195 322 0 chr11 18502395 18502482 -132281071 + L2 LINE L2 3158 3272 0 504 321 31 0 chr11 18503181 18503343 -132280210 + MIR SINE MIR 84 250 -12 430 255 115 35 chr11 18503905 18504105 -132279448 + MIR SINE MIR 32 247 -15 427 285 17 6 chr11 18504259 18504431 -132279122 - MER5B DNA MER1_type -4 174 1 184 327 0 0 chr11 18504572 18504627 -132278926 - L2 LINE L2 -14 3299 3245 435 278 28 17 chr11 18505187 18505367 -132278186 - L1ME LINE L1 -377 5744 5563 350 311 37 15 chr11 18505380 18505515 -132278038 - MIR3 SINE MIR -67 141 4 562 302 51 24 chr11 18506134 18506389 -132277164 - MIR SINE MIR 0 262 1 1834 179 93 6 chr11 18506457 18506810 -132276743 - MSTD LTR MaLR -12 384 1 312 319 51 7 chr11 18507427 18507566 -132275987 + MIR SINE MIR 17 146 -62 642 296 38 5 chr11 18507640 18507853 -132275700 - MIR SINE MIR -27 235 16 554 179 0 41 chr11 18508674 18508797 -132274756 - MIR SINE MIR -125 137 20 302 227 184 30 chr11 18509231 18509407 -132274146 - MIR SINE MIR -49 213 7 519 260 72 83 chr11 18509509 18509774 -132273779 + MIR SINE MIR 1 262 0 206 310 0 42 chr11 18509777 18509848 -132273705 + L2 LINE L2 3193 3260 -12 1998 84 9 96 chr11 18510217 18510549 -132273004 + AluSx SINE Alu 1 303 -9 392 278 8 38 chr11 18511107 18511240 -132272313 + MLT2C2 LTR ERVL 336 464 0 237 261 29 14 chr11 18511312 18511381 -132272172 + L1MC/D LINE L1 5470 5539 -2246 372 327 90 0 chr11 18511393 18511549 -132272004 - MIR SINE MIR -37 225 56 1253 206 79 20 chr11 18511927 18512253 -132271300 - Tigger7 DNA MER2_type 0 2491 1 207 344 48 42 chr11 18512277 18512466 -132271087 + MIR3 SINE MIR 16 205 -3 470 212 152 0 chr11 18513125 18513276 -132270277 + MIR SINE MIR 89 262 0 424 255 102 19 chr11 18513707 18513864 -132269689 + MIR3 SINE MIR 36 205 -3 4459 269 99 43 chr11 18514325 18515166 -132268387 + HAL1 LINE L1 2 794 -1713 1171 238 148 30 chr11 18515166 18515632 -132267921 - LTR33 LTR ERVL 0 521 1 4459 269 99 43 chr11 18515632 18517163 -132266390 + HAL1 LINE L1 794 2507 0 343 336 48 0 chr11 18517174 18517299 -132266254 + MIR SINE MIR 18 148 -114 335 283 94 49 chr11 18517732 18517976 -132265577 - MIR SINE MIR -6 256 2 225 321 131 15 chr11 18518459 18518772 -132264781 + L2 LINE L2 2697 3060 -212 411 297 149 0 chr11 18518824 18518972 -132264581 - MIR3 SINE MIR -23 185 16 281 306 28 9 chr11 18519624 18519732 -132263821 + MIR SINE MIR 126 235 -27 261 0 0 0 chr11 18520115 18520144 -132263409 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 457 264 8 8 chr11 18520429 18520550 -132263003 - MIR3 SINE MIR -13 195 75 307 236 0 0 chr11 18521319 18521374 -132262179 + MIR SINE MIR 45 99 -109 322 290 38 15 chr11 18521424 18521555 -132261998 + L1P LINE L1 4902 5035 -1111 5254 112 58 50 chr11 18521582 18522530 -132261023 + Tigger3b DNA MER2_type 13 968 -263 315 218 0 0 chr11 18522695 18522750 -132260803 + MIR SINE MIR 45 99 -109 1366 96 32 0 chr11 18522832 18523019 -132260534 + Tigger3b DNA MER2_type 1017 1209 -22 1883 133 0 41 chr11 18523030 18523218 -132260335 - AluSx SINE Alu -30 282 88 2282 104 67 20 chr11 18523218 18523564 -132259989 - THE1B LTR MaLR -2 362 1 11893 100 5 1 chr11 18523564 18525138 -132258415 - THE1B-int LTR MaLR 0 1580 1 2423 93 48 22 chr11 18525138 18525493 -132258060 - THE1B LTR MaLR 0 364 1 1883 133 0 41 chr11 18525493 18525596 -132257957 - AluSx SINE Alu -221 91 1 328 297 54 54 chr11 18525631 18525915 -132257638 + L1MC4a LINE L1 5039 5325 -821 1659 195 60 14 chr11 18525915 18526264 -132257289 - MLT1A1 LTR MaLR 0 365 1 328 297 54 54 chr11 18526264 18526275 -132257278 + L1MC4a LINE L1 5324 5334 -812 2082 198 33 54 chr11 18526277 18526419 -132257134 + MLT1D LTR MaLR 1 145 -360 2482 108 13 24 chr11 18526419 18526798 -132256755 + THE1C LTR MaLR 1 375 0 2082 198 33 54 chr11 18526798 18527170 -132256383 + MLT1D LTR MaLR 145 504 -1 265 171 0 68 chr11 18527190 18527278 -132256275 + L1MC4a LINE L1 5347 5428 -2380 2793 216 100 64 chr11 18527280 18527747 -132255806 + L1ME3 LINE L1 4678 5127 -1035 2018 58 0 4 chr11 18527747 18527987 -132255566 + AluY SINE Alu 62 300 -11 2793 216 100 64 chr11 18527987 18528925 -132254628 + L1ME3 LINE L1 5127 6161 -1 1983 271 42 12 chr11 18528920 18529566 -132253987 + L1MC4a LINE L1 5412 6076 -1732 * 357 284 35 35 chr11 18529718 18529859 -132253694 + MIR SINE MIR 73 213 -49 315 0 0 0 chr11 18530167 18530202 -132253351 + (GGA)n Simple_repeat Simple_repeat 1 35 0 209 278 41 76 chr11 18530741 18530912 -132252641 - MIR3 SINE MIR -66 142 12 740 239 148 17 chr11 18531446 18531676 -132251877 - MIR SINE MIR 0 262 3 610 213 43 24 chr11 18531914 18532078 -132251475 + LTR45 LTR ERV1 359 525 0 269 264 284 0 chr11 18532996 18533144 -132250409 - MIR SINE MIR -53 209 20 194 321 18 36 chr11 18533597 18533709 -132249844 - L2 LINE L2 -25 3247 3138 388 287 30 0 chr11 18533765 18533866 -132249687 - MIR3 SINE MIR -7 201 98 724 239 118 0 chr11 18533884 18534104 -132249449 - MIR SINE MIR 0 262 19 304 262 64 50 chr11 18534938 18535079 -132248474 + HAL1b LINE L1 1204 1346 -2 417 282 73 26 chr11 18535202 18535436 -132248117 + L2 LINE L2 2831 3075 -197 272 290 153 32 chr11 18535901 18536025 -132247528 - MIR3 SINE MIR -14 194 56 802 126 6 88 chr11 18536025 18536184 -132247369 - L1MA6 LINE L1 -323 5977 5832 921 131 84 0 chr11 18536184 18536371 -132247182 + L1MA8 LINE L1 6082 6288 -3 650 196 348 10 chr11 18536867 18537163 -132246390 + L1ME4a LINE L1 5725 6120 -1 524 295 62 21 chr11 18537427 18537668 -132245885 - MIR SINE MIR 0 262 12 269 259 38 76 chr11 18538111 18538296 -132245257 + MIR SINE MIR 20 197 -65 317 271 86 89 chr11 18538333 18538638 -132244915 + L2 LINE L2 2706 3014 -258 2254 112 0 10 chr11 18538638 18538951 -132244602 + AluSx SINE Alu 1 310 -2 317 271 86 89 chr11 18538951 18539023 -132244530 + L2 LINE L2 3014 3085 -187 444 270 55 6 chr11 18539929 18540092 -132243461 - MIR SINE MIR -15 247 77 1694 178 7 14 chr11 18541832 18542119 -132241434 - AluJo SINE Alu -18 294 10 446 231 0 75 chr11 18542517 18542651 -132240902 + MIR SINE MIR 20 143 -65 180 293 121 76 chr11 18542720 18542832 -132240721 + L3 LINE CR1 232 358 -1219 1595 168 25 38 chr11 18542832 18543148 -132240405 + AluSx SINE Alu 1 312 0 180 293 121 76 chr11 18543148 18543233 -132240320 + L3 LINE CR1 358 438 -1139 210 234 0 117 chr11 18543849 18543943 -132239610 + L3 LINE CR1 423 505 -1072 1108 205 139 0 chr11 18544045 18544347 -132239206 + L1ME3 LINE L1 5466 5809 -353 1949 96 55 126 chr11 18544347 18544712 -132238841 + Charlie3 DNA MER1_type 1 2712 0 4817 229 81 29 chr11 18544796 18545133 -132238420 + L1MC4a LINE L1 6230 6548 -1260 456 19 0 0 chr11 18545133 18545186 -132238367 + (CA)n Simple_repeat Simple_repeat 2 54 0 4817 229 81 29 chr11 18545186 18546349 -132237204 + L1MC4a LINE L1 6548 7808 0 556 207 5 0 chr11 18546430 18546543 -132237010 + L1ME3 LINE L1 6054 6162 0 789 227 72 100 chr11 18546755 18547076 -132236477 + L1MC4 LINE L1 6458 6769 -1273 840 148 0 16 chr11 18547099 18547227 -132236326 - FLAM_C SINE Alu -17 126 1 1473 153 37 11 chr11 18547227 18547495 -132236058 + L1MC4 LINE L1 6776 7050 -992 1315 308 124 31 chr11 18547513 18548325 -132235228 + L3 LINE CR1 582 1469 -108 820 246 182 45 chr11 18548658 18549125 -132234428 + MLT1H LTR MaLR 6 536 -13 611 228 9 0 chr11 18549200 18549314 -132234239 - MER90 LTR ERV1 0 614 500 383 138 35 0 chr11 18549313 18549371 -132234182 + AluSp/q SINE Alu 206 265 -38 * 1942 108 18 11 chr11 18549382 18549668 -132233885 - MER90 LTR ERV1 -325 289 2 316 260 39 19 chr11 18549678 18549782 -132233771 - MIR SINE MIR -70 192 87 * 364 330 43 11 chr11 18549773 18549961 -132233592 + MIR SINE MIR 59 252 -10 315 233 58 0 chr11 18550866 18550952 -132232601 - MIR SINE MIR -109 153 63 286 221 39 13 chr11 18551085 18551162 -132232391 + L2 LINE L2 3227 3305 -8 21 36 0 0 chr11 18552153 18552181 -132231372 + AT_rich Low_complexity Low_complexity 1 28 0 847 243 173 26 chr11 18552181 18552638 -132230915 - L1ME4a LINE L1 -2 6119 5596 197 342 0 0 chr11 18552648 18552724 -132230829 + L3 LINE CR1 1084 1159 -418 267 297 171 17 chr11 18552804 18552979 -132230574 - MIR SINE MIR -56 206 5 192 77 0 0 chr11 18553042 18553068 -132230485 + (GGGAA)n Simple_repeat Simple_repeat 1 26 0 2467 193 38 8 chr11 18553139 18553616 -132229937 + MLT1E2 LTR MaLR 136 626 0 1030 180 0 14 chr11 18553618 18553835 -132229718 + L1ME2 LINE L1 5758 5971 -193 24 0 0 0 chr11 18554230 18554254 -132229299 + AT_rich Low_complexity Low_complexity 1 24 0 199 184 26 0 chr11 18554452 18554490 -132229063 - L2 LINE L2 -676 2638 2600 440 275 42 7 chr11 18554490 18554632 -132228921 + MIR SINE MIR 49 195 -67 2710 132 29 5 chr11 18554931 18555348 -132228205 + MSTA LTR MaLR 1 427 -1 598 260 35 0 chr11 18555458 18555631 -132227922 - MIR SINE MIR -1 261 83 364 202 73 81 chr11 18555773 18555797 -132227756 - L2 LINE L2 -4 3268 3245 1780 152 19 16 chr11 18555797 18556106 -132227447 + AluJo SINE Alu 1 310 -2 364 202 73 81 chr11 18556106 18556205 -132227348 - L2 LINE L2 -27 3245 3146 812 270 60 8 chr11 18556258 18556506 -132227047 + MIR SINE MIR 2 262 0 320 340 101 30 chr11 18557159 18557524 -132226029 + L2 LINE L2 2366 2756 -558 203 318 45 9 chr11 18558014 18558124 -132225429 + MIR SINE MIR 93 206 -56 224 341 47 0 chr11 18559172 18559257 -132224296 + MIR SINE MIR 72 160 -102 206 240 0 150 chr11 18561905 18561951 -132221602 + MIR3 SINE MIR 109 134 -74 207 0 0 0 chr11 18561951 18561974 -132221579 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 206 240 0 150 chr11 18561974 18562027 -132221526 + MIR3 SINE MIR 134 193 -15 182 390 11 0 chr11 18562112 18562207 -132221346 + L2 LINE L2 2968 3063 -209 180 0 0 0 chr11 18563290 18563310 -132220243 + (A)n Simple_repeat Simple_repeat 1 20 0 474 310 35 0 chr11 18563358 18563503 -132220050 + MIR3 SINE MIR 54 203 -5 535 328 98 60 chr11 18564102 18564605 -132218948 + L2 LINE L2 2535 3054 -218 354 292 31 39 chr11 18565262 18565392 -132218161 + MIR SINE MIR 64 192 -70 216 0 0 0 chr11 18566297 18566321 -132217232 + (CA)n Simple_repeat Simple_repeat 2 25 0 192 77 0 0 chr11 18566321 18566347 -132217206 + (TC)n Simple_repeat Simple_repeat 1 26 0 1640 181 17 35 chr11 18566393 18566680 -132216873 - AluJo SINE Alu -30 282 1 204 40 0 0 chr11 18566759 18566784 -132216769 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 246 196 0 0 chr11 18567144 18567190 -132216363 - L2 LINE L2 -3 3310 3265 506 257 66 7 chr11 18567223 18567375 -132216178 - MIR SINE MIR -6 256 96 292 100 62 0 chr11 18567445 18567525 -132216028 + (TA)n Simple_repeat Simple_repeat 1 85 0 300 217 29 0 chr11 18567525 18567594 -132215959 - L1MA10 LINE L1 -32 6302 6232 1845 157 18 0 chr11 18567630 18567910 -132215643 - AluJb SINE Alu -23 289 5 284 250 29 0 chr11 18567914 18567982 -132215571 - L1MA10 LINE L1 -90 6244 6175 666 210 82 36 chr11 18568473 18568668 -132214885 + L1MD3 LINE L1 7784 7987 -8 434 256 71 18 chr11 18568696 18568860 -132214693 - MIR SINE MIR -27 235 65 334 264 0 50 chr11 18568986 18569107 -132214446 + MIR SINE MIR 93 207 -55 418 306 109 22 chr11 18569941 18570391 -132213162 + L2 LINE L2 2553 3055 -217 431 305 0 23 chr11 18570398 18570529 -132213024 - MER5B DNA MER1_type -3 175 48 901 184 6 6 chr11 18570546 18570709 -132212844 - FRAM SINE Alu -3 163 1 189 0 0 0 chr11 18570713 18570734 -132212819 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 189 262 0 0 chr11 18570760 18570802 -132212751 - MER5B DNA MER1_type -136 42 1 528 257 153 0 chr11 18570915 18571137 -132212416 - L2 LINE L2 -20 3293 3038 255 103 0 0 chr11 18571272 18571311 -132212242 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 320 281 0 34 chr11 18571311 18571400 -132212153 + L2 LINE L2 3186 3271 -1 390 310 63 11 chr11 18571455 18571629 -132211924 - MIR3 SINE MIR -2 206 24 21 57 0 0 chr11 18572469 18572504 -132211049 + AT_rich Low_complexity Low_complexity 1 35 0 226 179 192 26 chr11 18572604 18572682 -132210871 + MER5A DNA MER1_type 75 165 -24 432 243 37 0 chr11 18572718 18572825 -132210728 + MIR SINE MIR 152 262 0 703 197 9 136 chr11 18572988 18573056 -132210497 + MER5A DNA MER1_type 1 76 -113 4631 99 3 2 chr11 18573056 18573699 -132209854 + L1PB1 LINE L1 5506 6149 -2 703 197 9 136 chr11 18573699 18573843 -132209710 + MER5A DNA MER1_type 76 186 -3 479 210 252 0 chr11 18573863 18574006 -132209547 + MER5A DNA MER1_type 10 188 -1 491 245 168 0 chr11 18574078 18574274 -132209279 - MIR SINE MIR -14 248 20 208 213 66 16 chr11 18574627 18574688 -132208865 - L2 LINE L2 0 3272 3209 216 67 0 0 chr11 18574748 18574778 -132208775 + (CA)n Simple_repeat Simple_repeat 2 31 0 198 103 0 0 chr11 18574778 18574807 -132208746 + (TC)n Simple_repeat Simple_repeat 2 30 0 231 349 90 24 chr11 18574814 18574980 -132208573 - L2 LINE L2 -181 3091 2915 576 282 103 0 chr11 18575744 18575918 -132207635 + L2 LINE L2 2824 3015 -298 1002 92 0 0 chr11 18575946 18576076 -132207477 + AluSp/q SINE Alu 169 298 -15 2232 119 0 0 chr11 18576080 18576383 -132207170 + AluY SINE Alu 1 303 -8 411 192 88 93 chr11 18576419 18576612 -132206941 + L2 LINE L2 3103 3294 -19 344 283 8 33 chr11 18576619 18576739 -132206814 - MIR SINE MIR -112 150 34 314 326 0 0 chr11 18577489 18577578 -132205975 + MIR SINE MIR 168 256 -6 209 274 48 0 chr11 18577876 18577938 -132205615 - L2 LINE L2 -313 2959 2895 188 273 55 0 chr11 18579818 18579873 -132203680 - L2 LINE L2 -47 3225 3168 268 309 43 11 chr11 18579968 18580062 -132203491 + L2 LINE L2 3138 3234 -38 * 457 275 98 26 chr11 18580056 18580249 -132203304 + MIR SINE MIR 51 257 -5 289 316 154 29 chr11 18580362 18580746 -132202807 - L2 LINE L2 -181 3091 2642 204 298 0 0 chr11 18581537 18581584 -132201969 + polypurine Low_complexity Low_complexity 3 49 0 461 287 74 32 chr11 18581924 18582140 -132201413 + MIR SINE MIR 28 252 -10 247 224 0 0 chr11 18582122 18582171 -132201382 - L2 LINE L2 -4 3309 3261 * 241 316 0 13 chr11 18582926 18583002 -132200551 + L2 LINE L2 3234 3308 -5 544 325 11 26 chr11 18583597 18583788 -132199765 + MIR3 SINE MIR 4 191 -17 412 257 181 21 chr11 18583805 18583949 -132199604 + MER5A DNA MER1_type 23 189 0 394 237 193 0 chr11 18584611 18584725 -132198828 + L2 LINE L2 3137 3272 0 300 220 17 0 chr11 18585707 18585766 -132197787 - L2 LINE L2 0 3272 3213 374 298 218 16 chr11 18585863 18586115 -132197438 + L2 LINE L2 3010 3312 -1 669 269 114 9 chr11 18586155 18586374 -132197179 + MIR SINE MIR 11 252 -10 558 303 29 6 chr11 18586784 18586959 -132196594 + MIR3 SINE MIR 3 181 -27 186 315 83 65 chr11 18587594 18587702 -132195851 - L2 LINE L2 -16 3256 3147 1314 141 11 0 chr11 18587852 18588037 -132195516 + MER5A DNA MER1_type 3 189 0 582 66 13 0 chr11 18588220 18588296 -132195257 + L1PA5 LINE L1 6078 6154 0 551 210 46 22 chr11 18589550 18589710 -132193843 + MIR SINE MIR 20 180 -66 23 68 0 0 chr11 18590184 18590228 -132193325 + AT_rich Low_complexity Low_complexity 1 44 0 225 0 0 0 chr11 18591275 18591300 -132192253 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 984 192 77 34 chr11 18591340 18591574 -132191979 + AluJo SINE Alu 29 272 -40 194 0 0 37 chr11 18591574 18591601 -132191952 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 446 271 99 7 chr11 18591615 18591766 -132191787 - MIR3 SINE MIR 0 208 44 558 253 27 54 chr11 18591809 18591995 -132191558 - L2 LINE L2 0 3313 3133 360 312 0 0 chr11 18592383 18592476 -132191077 + MIR3 SINE MIR 82 174 -34 936 273 71 21 chr11 18592986 18593365 -132190188 + L1ME4a LINE L1 5582 5987 -134 1864 161 6 22 chr11 18593365 18593682 -132189871 + AluSx SINE Alu 1 312 0 936 273 71 21 chr11 18593682 18593738 -132189815 + L1ME4a LINE L1 5987 6039 -82 25 0 0 0 chr11 18593784 18593809 -132189744 + AT_rich Low_complexity Low_complexity 1 25 0 296 167 136 0 chr11 18593845 18593911 -132189642 + L3 LINE CR1 1364 1438 -139 407 239 11 11 chr11 18594519 18594607 -132188946 - MIR SINE MIR -94 114 27 918 152 0 0 chr11 18596716 18596854 -132186699 - FRAM SINE Alu -39 137 1 252 276 40 81 chr11 18597115 18597289 -132186264 - L1MC4 LINE L1 -19 8023 7857 1172 73 6 18 chr11 18597319 18597483 -132186070 - L1MB3 LINE L1 -2 6181 6020 3921 136 16 11 chr11 18597487 18598133 -132185420 - L1MB3 LINE L1 -254 5917 5269 * 5888 233 54 24 chr11 18598121 18599902 -132183651 - L1MB3 LINE L1 -1391 4755 2922 1302 258 74 13 chr11 18599898 18600031 -132183522 - L1MC4 LINE L1 0 8042 7918 * 2290 109 0 0 chr11 18600031 18600342 -132183211 - AluY SINE Alu 0 311 1 1302 258 74 13 chr11 18600342 18600670 -132182883 - L1MC4 LINE L1 -124 7918 7553 695 176 24 0 chr11 18600671 18600796 -132182757 - L1ME LINE L1 -5937 133 6 1132 190 45 0 chr11 18601500 18601700 -132181853 - MER3 DNA MER1_type 0 209 1 794 103 9 0 chr11 18601805 18601912 -132181641 + AluSp SINE Alu 26 133 -180 1267 113 0 11 chr11 18601935 18602121 -132181432 + AluSq SINE Alu 127 310 -3 408 272 0 10 chr11 18602217 18602320 -132181233 - MIR SINE MIR -60 148 47 527 355 50 0 chr11 18602327 18602527 -132181026 + MIR SINE MIR 23 232 -30 251 357 45 9 chr11 18603244 18603356 -132180197 - L2 LINE L2 -1 3271 3156 546 303 63 6 chr11 18603834 18604009 -132179544 + MIR SINE MIR 64 248 -14 1274 173 148 0 chr11 18604063 18604300 -132179253 - AluSg SINE Alu -6 304 33 247 262 2 17 chr11 18604438 18604521 -132179032 - MIR SINE MIR -66 142 73 225 323 152 26 chr11 18606023 18606267 -132177286 - L2 LINE L2 -261 3011 2739 515 231 77 8 chr11 18606277 18606394 -132177159 - L2 LINE L2 0 3272 3148 230 283 38 75 chr11 18606453 18606559 -132176994 + L2 LINE L2 3168 3269 -3 289 374 26 53 chr11 18606575 18606765 -132176788 - L2 LINE L2 -571 2743 2559 224 368 32 0 chr11 18607458 18607553 -132176000 - MIR SINE MIR -65 143 46 348 250 105 17 chr11 18607817 18607957 -132175596 + MIR3 SINE MIR 11 163 -62 244 256 144 0 chr11 18608327 18608417 -132175136 + L2 LINE L2 3211 3313 0 412 333 80 33 chr11 18608556 18608979 -132174574 + L2 LINE L2 1528 1970 -1344 584 302 45 6 chr11 18609761 18609940 -132173613 - L2 LINE L2 0 3313 3128 283 238 21 119 chr11 18610957 18611100 -132172453 + MIR SINE MIR 79 207 -55 231 327 112 74 chr11 18611233 18611545 -132172008 + L2 LINE L2 2942 3265 -7 408 309 75 32 chr11 18612477 18612665 -132170888 + MIR SINE MIR 52 247 -15 311 319 156 22 chr11 18613700 18613976 -132169577 + L1ME LINE L1 5522 5834 -287 2351 93 0 28 chr11 18614965 18615286 -132168267 - AluSx SINE Alu 0 312 1 304 269 120 19 chr11 18615435 18615543 -132168010 + L2 LINE L2 3189 3307 -6 505 216 52 9 chr11 18615907 18616023 -132167530 - MIR SINE MIR -122 140 20 284 350 81 0 chr11 18617044 18617167 -132166386 + L2 LINE L2 2929 3061 -211 303 250 62 12 chr11 18617222 18617302 -132166251 - MIR3 SINE MIR -46 162 79 193 189 113 0 chr11 18617785 18617838 -132165715 - MIR SINE MIR -46 216 158 406 300 79 49 chr11 18618013 18618254 -132165299 - MIR SINE MIR -6 256 2 2406 94 0 0 chr11 18619017 18619324 -132164229 + AluSx SINE Alu 1 307 -5 279 0 0 0 chr11 18619482 18619513 -132164040 + (A)n Simple_repeat Simple_repeat 1 31 0 2029 142 7 0 chr11 18619513 18619801 -132163752 - AluSx SINE Alu -21 291 2 378 198 188 0 chr11 18619922 18620018 -132163535 - MIR SINE MIR -78 184 71 217 336 61 30 chr11 18620653 18620784 -132162769 + L3 LINE CR1 1441 1575 -2 386 286 158 41 chr11 18621111 18621170 -132162383 + L2 LINE L2 2875 2926 -387 2484 83 61 22 chr11 18621170 18621531 -132162022 + THE1C LTR MaLR 1 375 0 386 286 158 41 chr11 18621531 18621863 -132161690 + L2 LINE L2 2926 3312 -1 310 311 113 0 chr11 18621935 18622041 -132161512 + MIR SINE MIR 67 184 -78 450 279 51 76 chr11 18622418 18622615 -132160938 + MIR3 SINE MIR 15 206 -2 598 214 121 12 chr11 18622970 18623143 -132160410 - MIR SINE MIR -13 249 58 582 265 50 15 chr11 18623185 18623385 -132160168 - MIR SINE MIR -48 214 8 249 253 94 137 chr11 18623914 18624309 -132159244 + L2 LINE L2 2886 3263 -9 716 247 25 43 chr11 18624459 18624548 -132159005 - L2 LINE L2 -8 3305 3216 1471 177 3 63 chr11 18624548 18624848 -132158705 + AluJo SINE Alu 26 307 -5 716 247 25 43 chr11 18624848 18624993 -132158560 - L2 LINE L2 -97 3216 3075 514 274 44 0 chr11 18625683 18625818 -132157735 - MIR3 SINE MIR -52 156 16 507 300 29 29 chr11 18626001 18626171 -132157382 - MIR3 SINE MIR -11 197 28 15206 105 57 19 chr11 18626205 18627030 -132156523 + Tigger1 DNA MER2_type 24 816 -1602 2226 119 0 3 chr11 18627030 18627340 -132156213 + AluSg SINE Alu 1 309 -1 15206 105 57 19 chr11 18627340 18628822 -132154731 + Tigger1 DNA MER2_type 816 2418 0 398 209 77 53 chr11 18630737 18630895 -132152658 + MIR SINE MIR 38 203 -5 331 260 99 20 chr11 18631326 18631469 -132152084 + MIR SINE MIR 97 255 -7 383 264 121 17 chr11 18632126 18632273 -132151280 - MIR SINE MIR -61 147 14 2046 106 3 48 chr11 18632404 18632715 -132150838 - AluSg SINE Alu -13 297 1 264 333 59 0 chr11 18632764 18632866 -132150687 + L3 LINE CR1 163 270 -1307 470 282 213 29 chr11 18633252 18633529 -132150024 - L2 LINE L2 -60 3253 2926 2022 193 28 6 chr11 18633725 18634082 -132149471 + MLT1A1 LTR MaLR 1 365 0 404 337 60 20 chr11 18634165 18634364 -132149189 + MIR SINE MIR 50 256 -6 449 277 14 21 chr11 18634802 18634943 -132148610 + MIR3 SINE MIR 67 206 -2 234 248 155 8 chr11 18635596 18635725 -132147828 + L2 LINE L2 3107 3254 -18 301 333 17 17 chr11 18635855 18635972 -132147581 + MIR3 SINE MIR 83 199 -9 381 289 70 28 chr11 18636299 18636441 -132147112 - MIR3 SINE MIR -25 183 36 672 251 194 16 chr11 18636609 18636975 -132146578 - L1ME4a LINE L1 -41 6080 5650 256 248 89 10 chr11 18636995 18637096 -132146457 - MIR3 SINE MIR -13 195 87 1981 141 0 13 chr11 18637916 18638220 -132145333 - AluJo SINE Alu -12 300 1 660 246 91 32 chr11 18638322 18638509 -132145044 + MIR3 SINE MIR 9 206 -2 265 232 0 18 chr11 18639062 18639118 -132144435 + MIR SINE MIR 98 152 -56 308 252 122 38 chr11 18639597 18639728 -132143825 - MIR SINE MIR -30 232 91 690 307 91 57 chr11 18639737 18640290 -132143263 - L2 LINE L2 -74 3239 2656 2756 139 24 2 chr11 18640290 18640707 -132142846 - MSTA LTR MaLR -2 426 1 690 307 91 57 chr11 18640707 18640818 -132142735 - L2 LINE L2 -657 2656 2550 350 330 34 17 chr11 18640797 18640915 -132142638 - MIR SINE MIR -137 125 6 * 591 251 89 22 chr11 18640917 18641096 -132142457 - L2 LINE L2 0 3313 3123 350 246 43 65 chr11 18641389 18641527 -132142026 - MIR SINE MIR -55 207 73 802 180 8 0 chr11 18641967 18642095 -132141458 - MER20 DNA MER1_type 0 219 91 223 333 0 0 chr11 18643002 18643056 -132140497 + L2 LINE L2 3133 3186 -86 274 291 43 77 chr11 18643418 18643535 -132140018 - L2 LINE L2 -49 3223 3111 209 162 0 0 chr11 18645135 18645172 -132138381 - L2 LINE L2 -5 3308 3272 593 211 43 56 chr11 18645426 18645587 -132137966 + MIR3 SINE MIR 1 159 -49 237 188 175 0 chr11 18645603 18645676 -132137877 - MER102a DNA MER1_type -38 292 220 1238 152 57 46 chr11 18645805 18646068 -132137485 + MER33 DNA MER1_type 1 266 -58 277 370 20 0 chr11 18646099 18646199 -132137354 - MIR SINE MIR -73 135 34 482 273 33 66 chr11 18646307 18646490 -132137063 + MIR3 SINE MIR 29 205 -3 1913 108 3 76 chr11 18646889 18647205 -132136348 - AluSx SINE Alu -18 294 2 260 156 0 0 chr11 18647261 18647306 -132136247 + L1MB8 LINE L1 6085 6129 -49 30 83 0 0 chr11 18647327 18647399 -132136154 + AT_rich Low_complexity Low_complexity 1 72 0 252 382 32 0 chr11 18647583 18647706 -132135847 + MIR3 SINE MIR 66 192 -16 357 203 47 23 chr11 18648376 18648504 -132135049 + (TAGA)n Simple_repeat Simple_repeat 2 132 0 288 253 313 3 chr11 18648820 18648972 -132134581 - MIR SINE MIR -56 206 25 945 246 76 38 chr11 18649280 18649568 -132133985 + L1MC4 LINE L1 6451 6749 -1293 229 360 149 43 chr11 18650119 18650339 -132133214 - L2 LINE L2 -12 3260 2992 2284 54 0 7 chr11 18650339 18650619 -132132934 + AluY SINE Alu 31 308 -3 229 360 149 43 chr11 18650619 18650726 -132132827 - L2 LINE L2 -280 2992 2898 224 57 0 29 chr11 18651202 18651237 -132132316 + (GA)n Simple_repeat Simple_repeat 1 34 0 499 335 12 12 chr11 18652365 18652535 -132131018 - MIR3 SINE MIR -22 186 17 4782 145 45 50 chr11 18652893 18653066 -132130487 + L1MB3 LINE L1 5154 5326 -857 1571 173 35 0 chr11 18653066 18653326 -132130227 + AluJb SINE Alu 24 292 -20 4782 145 45 50 chr11 18653326 18654176 -132129377 + L1MB3 LINE L1 5326 6183 0 1557 206 0 17 chr11 18654249 18654541 -132129012 + AluJo SINE Alu 1 287 -25 356 243 9 0 chr11 18654544 18654655 -132128898 + (TATATG)n Simple_repeat Simple_repeat 2 113 0 1442 224 20 66 chr11 18654658 18655065 -132128488 + MLT1B LTR MaLR 2 389 -1 2741 147 31 2 chr11 18655065 18655513 -132128040 + L1MD1 LINE L1 5777 6237 -5 482 286 97 19 chr11 18655864 18656070 -132127483 + MIR SINE MIR 20 241 -21 2033 145 0 19 chr11 18656252 18656569 -132126984 + AluJo SINE Alu 1 311 -1 193 216 0 0 chr11 18656867 18656904 -132126649 - L3 LINE CR1 -15 1562 1526 851 203 61 0 chr11 18656904 18657067 -132126486 - MER58B DNA MER1_type 0 341 169 437 223 143 30 chr11 18657089 18657313 -132126240 - L3 LINE CR1 -44 1533 1221 1855 169 205 25 chr11 18657313 18657791 -132125762 + MLT1F1 LTR MaLR 1 564 -3 239 254 105 26 chr11 18657796 18657910 -132125643 - L3 LINE CR1 -354 1223 1101 228 270 87 78 chr11 18657940 18658055 -132125498 + L2 LINE L2 3106 3221 -51 428 293 26 0 chr11 18658060 18658176 -132125377 - L3 LINE CR1 -489 1088 970 185 315 21 77 chr11 18658305 18658448 -132125105 + L2 LINE L2 2545 2679 -635 295 291 87 115 chr11 18658461 18658921 -132124632 + L2 LINE L2 2826 3272 0 737 239 17 0 chr11 18659467 18659639 -132123914 + MER33 DNA MER1_type 1 165 -99 1252 103 6 0 chr11 18659639 18659813 -132123740 + AluSg/x SINE Alu 132 306 -6 1168 174 88 3 chr11 18659826 18660057 -132123496 + L1MB7 LINE L1 5925 6173 -11 538 120 90 0 chr11 18660057 18660157 -132123396 + MER33 DNA MER1_type 255 363 0 186 333 52 10 chr11 18661414 18661510 -132122043 - L2 LINE L2 -235 3037 2938 240 354 122 7 chr11 18662071 18662218 -132121335 - L3b LINE CR1 -6 1577 1414 2004 127 0 53 chr11 18662239 18662562 -132120991 - AluSx SINE Alu -6 306 1 685 237 163 5 chr11 18663098 18663153 -132120400 - MIR SINE MIR -9 253 208 881 189 110 68 chr11 18663153 18663417 -132120136 - ORSL DNA AcHobo 0 275 1 685 237 163 5 chr11 18663417 18663576 -132119977 - MIR SINE MIR -54 208 5 402 200 76 90 chr11 18663734 18663879 -132119674 + MIR3 SINE MIR 64 206 -2 21 0 0 0 chr11 18664295 18664316 -132119237 + AT_rich Low_complexity Low_complexity 1 21 0 227 312 39 13 chr11 18665677 18665754 -132117799 + MIR3 SINE MIR 130 208 0 862 195 85 9 chr11 18665833 18666107 -132117446 - MER46C DNA MER2_type -2 336 1 261 57 0 0 chr11 18666264 18666299 -132117254 + (CATA)n Simple_repeat Simple_repeat 2 36 0 492 159 93 0 chr11 18666445 18666552 -132117001 - MIR SINE MIR -62 200 84 627 233 140 26 chr11 18666679 18666907 -132116646 + L2 LINE L2 3057 3310 -3 423 98 0 0 chr11 18667204 18667265 -132116288 + (CA)n Simple_repeat Simple_repeat 1 61 0 2036 148 28 60 chr11 18667289 18667689 -132115864 + MLT1B LTR MaLR 4 390 0 420 280 106 32 chr11 18668183 18668372 -132115181 - L2 LINE L2 -1 3312 3110 23 0 0 0 chr11 18669059 18669082 -132114471 + GC_rich Low_complexity Low_complexity 1 23 0 498 122 0 0 chr11 18671324 18671422 -132112131 + (GA)n Simple_repeat Simple_repeat 1 98 0 1092 136 0 6 chr11 18671944 18672113 -132111440 - AluJb SINE Alu -8 304 137 214 214 71 0 chr11 18672117 18672173 -132111380 - MIR SINE MIR -115 147 88 269 287 70 38 chr11 18672173 18672330 -132111223 + L1ME LINE L1 1 162 -5908 2769 137 99 29 chr11 18672901 18673466 -132110087 + MER4B LTR ERV1 1 779 0 592 113 0 2 chr11 18674046 18674293 -132109260 + AluSx SINE Alu 1 293 -16 2569 68 0 0 chr11 18674485 18674793 -132108760 + AluY SINE Alu 1 308 -3 290 372 63 17 chr11 18675616 18675855 -132107698 - L2 LINE L2 -989 2325 2076 180 77 0 0 chr11 18677716 18677742 -132105811 + (CA)n Simple_repeat Simple_repeat 2 27 0 183 376 65 0 chr11 18678236 18678329 -132105224 + L2 LINE L2 2566 2664 -650 2263 187 86 26 chr11 18680221 18680804 -132102749 - Charlie1 DNA MER1_type 0 2761 2144 412 208 13 0 chr11 18680795 18680872 -132102681 - Charlie1 DNA MER1_type -2682 79 2 * 456 300 216 30 chr11 18680885 18681218 -132102335 + L2 LINE L2 2845 3239 -33 562 139 0 40 chr11 18681407 18681551 -132102002 - AluSg/x SINE Alu 0 354 215 964 261 0 72 chr11 18682060 18682378 -132101175 + L2 LINE L2 3001 3295 -18 338 247 0 75 chr11 18682381 18682474 -132101079 - MIR SINE MIR -1 261 176 231 36 0 0 chr11 18682478 18682506 -132101047 + (A)n Simple_repeat Simple_repeat 1 28 0 394 296 74 29 chr11 18682851 18683077 -132100476 - MIR SINE MIR -6 256 20 1091 208 10 10 chr11 18683423 18683630 -132099923 + MER3 DNA MER1_type 3 209 0 829 329 176 10 chr11 18684357 18684856 -132098697 - L3 LINE CR1 -2 1575 994 2069 119 0 50 chr11 18684869 18685189 -132098364 + AluSq SINE Alu 2 305 -8 22 35 0 0 chr11 18686034 18686063 -132097490 + AT_rich Low_complexity Low_complexity 1 29 0 1694 174 0 41 chr11 18686212 18686528 -132097025 + AluJo SINE Alu 1 303 -9 205 293 52 0 chr11 18686790 18686848 -132096705 - L2 LINE L2 -219 3053 2993 243 0 0 0 chr11 18686861 18686888 -132096665 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 185 324 33 71 chr11 18686996 18687041 -132096512 - L2 LINE L2 -527 2787 2742 2686 153 51 11 chr11 18687041 18687570 -132095983 - L1MB7 LINE L1 0 6184 5635 185 324 33 71 chr11 18687570 18687706 -132095847 - L2 LINE L2 -572 2742 2613 314 330 138 16 chr11 18687770 18687958 -132095595 + L2 LINE L2 2874 3084 -188 2492 69 0 3 chr11 18688623 18688929 -132094624 - AluY SINE Alu -6 305 1 25 31 0 0 chr11 18689018 18689050 -132094503 + AT_rich Low_complexity Low_complexity 1 32 0 2134 135 0 0 chr11 18689062 18689350 -132094203 + AluSx SINE Alu 9 296 -16 180 0 0 0 chr11 18689468 18689488 -132094065 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 449 321 33 118 chr11 18689876 18690300 -132093253 + L2 LINE L2 2876 3263 -9 388 289 74 7 chr11 18690308 18690443 -132093110 - MIR3 SINE MIR -46 162 19 826 148 82 6 chr11 18690981 18691223 -132092330 - MER1B DNA MER1_type -15 324 31 1841 164 16 10 chr11 18691437 18691814 -132091739 - AluJb SINE Alu 0 379 1 219 229 0 21 chr11 18692865 18692913 -132090640 + MIR3 SINE MIR 123 169 -39 2136 131 3 0 chr11 18693165 18693462 -132090091 + AluJo SINE Alu 1 298 -14 646 243 15 0 chr11 18693887 18694023 -132089530 - MIR SINE MIR -120 142 5 752 260 18 41 chr11 18694028 18694370 -132089183 + HAL1 LINE L1 2067 2400 -107 23 0 0 0 chr11 18694868 18694891 -132088662 + AT_rich Low_complexity Low_complexity 1 23 0 419 266 104 66 chr11 18694949 18695238 -132088315 + HAL1 LINE L1 2164 2463 -44 912 294 36 0 chr11 18695312 18695560 -132087993 - MIR SINE MIR -4 258 2 562 269 48 48 chr11 18695701 18695887 -132087666 + L2 LINE L2 3115 3300 -13 324 275 42 21 chr11 18695898 18696040 -132087513 - L1ME LINE L1 -455 5666 5522 29 84 0 0 chr11 18696158 18696229 -132087324 + AT_rich Low_complexity Low_complexity 1 71 0 1010 206 5 21 chr11 18696469 18696663 -132086890 - AluJo SINE Alu -30 282 92 235 250 113 25 chr11 18697505 18697585 -132085968 + MIR SINE MIR 28 114 -148 341 241 16 155 chr11 18698597 18698784 -132084769 + MIR SINE MIR 92 252 -10 2000 150 7 0 chr11 18699410 18699716 -132083837 + AluSx SINE Alu 1 308 -4 1247 134 0 63 chr11 18699745 18699968 -132083585 + AluJo SINE Alu 87 295 -17 2198 72 0 7 chr11 18700239 18700518 -132083035 + AluSc SINE Alu 12 288 -21 267 54 0 0 chr11 18700838 18700875 -132082678 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 251 252 171 24 chr11 18702008 18702131 -132081422 + MIR SINE MIR 111 251 -11 191 211 0 0 chr11 18702098 18702136 -132081417 + L2 LINE L2 3223 3260 -12 * 1364 191 99 10 chr11 18703050 18703408 -132080145 - L1ME1 LINE L1 -5 6161 5781 359 298 94 26 chr11 18703430 18703621 -132079932 - MIR SINE MIR -54 208 5 7238 118 23 6 chr11 18703681 18705898 -132077655 + L1MA2 LINE L1 4048 6301 -3 24 0 0 0 chr11 18705898 18705922 -132077631 + AT_rich Low_complexity Low_complexity 1 24 0 1294 215 128 9 chr11 18706089 18706433 -132077120 - MLT1D LTR MaLR -120 385 1 530 329 111 63 chr11 18706652 18706974 -132076579 + L2 LINE L2 2026 2331 -941 3344 189 9 15 chr11 18706974 18707660 -132075893 + L1MB5 LINE L1 5485 6166 -8 530 329 111 63 chr11 18707660 18708296 -132075257 + L2 LINE L2 2331 3037 -235 232 222 74 0 chr11 18708485 18708539 -132075014 + L2 LINE L2 3207 3264 -8 250 330 59 15 chr11 18708633 18708836 -132074717 - L1ME1 LINE L1 -2223 5585 5374 884 228 55 119 chr11 18709133 18709229 -132074324 - L2 LINE L2 -655 2659 2558 293 29 0 0 chr11 18709229 18709264 -132074289 + U2 snRNA snRNA 2 36 -152 884 228 55 119 chr11 18709264 18709620 -132073933 - L2 LINE L2 -756 2558 2204 1657 155 43 7 chr11 18709630 18709908 -132073645 + AluJo SINE Alu 1 288 -24 28 0 0 0 chr11 18709908 18709936 -132073617 + AT_rich Low_complexity Low_complexity 1 28 0 664 100 41 0 chr11 18709936 18710159 -132073394 + (TA)n Simple_repeat Simple_repeat 1 232 0 205 151 94 19 chr11 18710487 18710540 -132073013 + MIR SINE MIR 44 100 -108 1098 152 0 6 chr11 18711131 18711309 -132072244 - AluSg/x SINE Alu -12 300 124 357 351 95 12 chr11 18711330 18711498 -132072055 - L2 LINE L2 -3 3269 3088 387 320 23 8 chr11 18711635 18711763 -132071790 + MIR3 SINE MIR 3 132 -76 573 306 56 23 chr11 18712484 18712700 -132070853 - MIR SINE MIR -12 250 28 704 322 63 40 chr11 18713007 18713451 -132070102 - MLT1K LTR MaLR -111 477 24 318 91 0 18 chr11 18713469 18713524 -132070029 + L1MA2 LINE L1 6097 6150 -154 290 118 0 0 chr11 18713533 18713584 -132069969 + L1MA2 LINE L1 6098 6148 -156 1346 79 5 46 chr11 18713595 18713646 -132069907 + L1MA2 LINE L1 6098 6150 -154 2208 120 0 7 chr11 18713646 18713945 -132069608 + AluSx SINE Alu 1 297 -15 1346 79 5 46 chr11 18713945 18714109 -132069444 + L1MA2 LINE L1 6150 6304 0 231 245 0 0 chr11 18714269 18714318 -132069235 + L2 LINE L2 3264 3312 -1 7686 21 0 0 chr11 18715080 18716055 -132067498 - L1PA3 LINE L1 -3 6152 5177 11502 28 1 25 chr11 18716055 18717559 -132065994 + L1PA3 LINE L1 3714 5180 -966 859 251 150 5 chr11 18717590 18717797 -132065756 - MIR SINE MIR -21 241 5 308 236 60 121 chr11 18718024 18718223 -132065330 + MLT1J2 LTR MaLR 264 450 0 559 247 28 72 chr11 18718585 18718945 -132064608 + L1M4 LINE L1 3656 3999 -2147 481 180 0 34 chr11 18718958 18719047 -132064506 - AluJ/FRAM SINE Alu -13 299 214 1893 145 0 42 chr11 18720504 18720640 -132062913 + AluJb SINE Alu 1 141 -171 2333 109 0 3 chr11 18720640 18720952 -132062601 + AluSq SINE Alu 1 311 -2 1893 145 0 42 chr11 18720952 18721125 -132062428 + AluJb SINE Alu 141 297 -15 434 205 7 80 chr11 18721412 18721563 -132061990 - MER69A DNA AcHobo -1 176 37 836 207 6 6 chr11 18721566 18721740 -132061813 + MER5B DNA MER1_type 4 177 -1 253 264 0 0 chr11 18721800 18721853 -132061700 - L2 LINE L2 0 3272 3220 * 317 241 0 58 chr11 18721840 18721927 -132061626 + L2 LINE L2 3191 3272 0 1131 140 0 0 chr11 18722540 18722704 -132060849 + AluSg/x SINE Alu 134 297 -15 22 0 0 0 chr11 18722714 18722736 -132060817 + AT_rich Low_complexity Low_complexity 1 22 0 195 263 11 84 chr11 18723523 18723618 -132059935 + L2 LINE L2 3185 3272 0 2287 90 0 13 chr11 18726092 18726392 -132057161 + AluSx SINE Alu 1 296 -16 315 264 73 36 chr11 18726736 18726846 -132056707 - MIR SINE MIR -66 196 83 387 335 145 11 chr11 18727354 18727623 -132055930 + L2 LINE L2 2228 2532 -782 282 204 97 32 chr11 18728199 18728292 -132055261 - MLT1F LTR MaLR -20 522 424 915 185 0 13 chr11 18728329 18728486 -132055067 - FRAM SINE Alu -21 155 1 326 196 2 12 chr11 18728614 18728696 -132054857 - MLT1H LTR MaLR -264 162 64 365 211 92 0 chr11 18728885 18728961 -132054592 + L2 LINE L2 3214 3296 -17 587 303 70 8 chr11 18729226 18729467 -132054086 + MIR SINE MIR 3 258 -4 1657 167 38 7 chr11 18730510 18730632 -132052921 + AluJo SINE Alu 1 118 -184 2024 105 6 94 chr11 18730632 18730770 -132052783 + AluSx SINE Alu 1 150 -162 2357 113 0 0 chr11 18730770 18731080 -132052473 + AluSg SINE Alu 1 310 0 2024 105 6 94 chr11 18731080 18731283 -132052270 + AluSx SINE Alu 150 312 0 1657 167 38 7 chr11 18731283 18731453 -132052100 + AluJo SINE Alu 118 302 0 528 189 33 59 chr11 18731453 18731606 -132051947 - L1MC5 LINE L1 -82 7879 7731 563 170 0 38 chr11 18731662 18731768 -132051785 + FLAM_A SINE Alu 34 135 -7 266 0 0 29 chr11 18732379 18732414 -132051139 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2494 48 10 13 chr11 18732991 18733300 -132050253 + AluY SINE Alu 1 308 -3 2336 65 11 0 chr11 18734223 18734525 -132049028 + AluY SINE Alu 1 305 0 1776 138 3 21 chr11 18735414 18735696 -132047857 - L1PA16 LINE L1 -1 6165 5889 366 356 71 52 chr11 18736091 18736557 -132046996 + L2 LINE L2 2373 2847 -467 1946 144 3 0 chr11 18737058 18737342 -132046211 - AluJb SINE Alu -8 304 20 23 54 0 0 chr11 18737864 18737901 -132045652 + AT_rich Low_complexity Low_complexity 1 37 0 242 289 156 22 chr11 18738211 18738391 -132045162 - L2 LINE L2 -5 3308 3105 842 164 0 14 chr11 18738485 18738625 -132044928 + AluJb SINE Alu 1 138 -174 957 248 134 48 chr11 18738632 18739088 -132044465 + L2 LINE L2 2552 3044 -269 244 305 29 99 chr11 18739111 18739218 -132044335 + L1M4 LINE L1 3923 4036 -2110 2007 144 0 0 chr11 18739218 18739496 -132044057 - AluSx SINE Alu -34 278 1 244 305 29 99 chr11 18739496 18739660 -132043893 + L1M4 LINE L1 4036 4175 -1971 836 187 0 0 chr11 18739852 18739986 -132043567 + FRAM SINE Alu 18 151 -25 2144 131 0 6 chr11 18739996 18740309 -132043244 + AluSx SINE Alu 1 311 -1 533 217 112 20 chr11 18740864 18741016 -132042537 - L2 LINE L2 0 3313 3148 383 369 130 42 chr11 18741377 18741762 -132041791 - L2 LINE L2 -9 3263 2845 541 179 94 8 chr11 18741833 18741950 -132041603 - L1PA16 LINE L1 -4 6162 6036 270 365 0 0 chr11 18742060 18742145 -132041408 - L2 LINE L2 -644 2670 2586 189 228 88 0 chr11 18742285 18742342 -132041211 - L2 LINE L2 -899 2415 2354 1588 198 7 3 chr11 18743346 18743634 -132039919 + AluJo SINE Alu 1 289 -23 237 281 96 50 chr11 18744144 18744343 -132039210 - L1ME3A LINE L1 0 6170 5963 21 0 0 0 chr11 18744374 18744395 -132039158 + AT_rich Low_complexity Low_complexity 1 21 0 959 273 56 6 chr11 18744517 18744873 -132038680 - L1ME3A LINE L1 -266 5904 5531 21 57 0 0 chr11 18745778 18745813 -132037740 + AT_rich Low_complexity Low_complexity 1 35 0 2953 155 67 8 chr11 18746549 18747040 -132036513 + Tigger7 DNA MER2_type 3 522 -1965 527 148 45 0 chr11 18747039 18747127 -132036426 + Tigger7 DNA MER2_type 2396 2487 0 * 737 225 140 9 chr11 18747192 18747414 -132036139 - MIR SINE MIR -10 252 2 471 284 11 30 chr11 18747649 18747832 -132035721 + MER5A DNA MER1_type 1 178 0 1251 222 26 4 chr11 18747862 18748096 -132035457 - MER8 DNA MER2_type 0 239 1 586 231 66 0 chr11 18748526 18748647 -132034906 - MER5B DNA MER1_type -14 164 36 491 192 121 115 chr11 18748654 18748836 -132034717 + MER5A DNA MER1_type 7 189 0 296 298 138 0 chr11 18749139 18749233 -132034320 + MIR SINE MIR 3 109 -153 221 358 152 6 chr11 18749731 18749896 -132033657 + MIR3 SINE MIR 19 207 -1 43 0 0 0 chr11 18749896 18749939 -132033614 + AT_rich Low_complexity Low_complexity 1 43 0 1866 143 0 14 chr11 18749947 18750240 -132033313 + AluJb SINE Alu 13 301 -11 2178 110 3 7 chr11 18750592 18750901 -132032652 + AluSx SINE Alu 2 309 -3 1610 139 78 48 chr11 18751196 18751490 -132032063 + AluJb SINE Alu 2 304 -8 1995 138 0 7 chr11 18751500 18751798 -132031755 + AluJb SINE Alu 1 296 -16 22 0 0 0 chr11 18752093 18752115 -132031438 + AT_rich Low_complexity Low_complexity 1 22 0 785 261 51 13 chr11 18752510 18752744 -132030809 - MIR SINE MIR 0 262 20 808 136 13 71 chr11 18752745 18752900 -132030653 - FAM SINE Alu -20 165 20 553 266 124 38 chr11 18752961 18753228 -132030325 - L2 LINE L2 0 3313 3024 300 312 111 30 chr11 18753274 18753473 -132030080 - L2 LINE L2 -159 3113 2899 622 216 213 63 chr11 18753781 18754082 -132029471 + L1ME1 LINE L1 2589 2934 -3212 993 87 0 0 chr11 18754088 18754214 -132029339 + AluJb SINE Alu 4 129 -183 332 231 28 37 chr11 18754240 18754348 -132029205 + L1ME1 LINE L1 2946 3052 -3094 3281 201 36 47 chr11 18754353 18754915 -132028638 + L1ME1 LINE L1 4841 5407 -759 2393 112 27 32 chr11 18754915 18755290 -132028263 + THE1C LTR MaLR 3 375 0 3281 201 36 47 chr11 18755290 18755757 -132027796 + L1ME1 LINE L1 5407 6100 -66 1956 143 14 0 chr11 18755757 18756051 -132027502 + AluSx SINE Alu 1 298 -14 3281 201 36 47 chr11 18756051 18756113 -132027440 + L1ME1 LINE L1 6100 6161 -5 200 360 43 50 chr11 18756137 18756298 -132027255 - L2 LINE L2 -556 2758 2599 385 279 54 9 chr11 18756314 18756425 -132027128 + MIR SINE MIR 97 212 -50 4642 150 47 31 chr11 18757069 18757884 -132025669 + MER6 DNA MER2_type 37 864 -1 413 318 121 20 chr11 18758219 18758600 -132024953 - L2 LINE L2 -213 3059 2627 388 253 18 72 chr11 18758621 18758787 -132024766 - MIR SINE MIR -11 251 95 1830 117 20 30 chr11 18758810 18759109 -132024444 - AluJo SINE Alu -16 296 1 810 81 10 0 chr11 18760027 18760126 -132023427 - AluJ/FLAM SINE Alu -210 102 3 592 215 99 36 chr11 18761284 18761399 -132022154 - MER20B DNA MER1_type -50 733 627 2185 49 7 18 chr11 18761399 18761715 -132021838 - AluY SINE Alu 0 313 1 592 215 99 36 chr11 18761715 18761821 -132021732 - MER20B DNA MER1_type -156 627 497 2093 152 3 20 chr11 18761828 18762183 -132021370 - MER65C LTR ERV1 -1 460 112 787 169 0 16 chr11 18762185 18762309 -132021244 - FLAM_C SINE Alu -21 122 1 213 119 0 0 chr11 18762310 18762352 -132021201 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1882 61 16 8 chr11 18762353 18762598 -132020955 - AluY SINE Alu -26 285 39 21 57 0 0 chr11 18762727 18762762 -132020791 + AT_rich Low_complexity Low_complexity 1 35 0 1831 143 59 0 chr11 18762785 18763072 -132020481 + AluSx SINE Alu 1 304 -8 1837 159 0 14 chr11 18763422 18763733 -132019820 + AluJb SINE Alu 1 307 0 475 266 120 16 chr11 18764380 18764572 -132018981 + MIR SINE MIR 51 262 0 191 203 16 0 chr11 18765254 18765318 -132018235 + CT-rich Low_complexity Low_complexity 3 67 0 1661 189 54 3 chr11 18765320 18765496 -132018057 - AluJo SINE Alu 0 312 113 199 0 65 0 chr11 18765496 18765527 -132018026 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1661 189 54 3 chr11 18765527 18765647 -132017906 - AluJo SINE Alu -199 113 1 356 277 97 15 chr11 18765684 18765879 -132017674 - L1M4 LINE L1 -2610 3536 3326 301 266 80 62 chr11 18766105 18766218 -132017335 - L2 LINE L2 -8 3264 3150 225 316 71 10 chr11 18767521 18767619 -132015934 + MIR SINE MIR 118 221 -41 426 234 15 109 chr11 18768038 18768239 -132015314 - MER5A DNA MER1_type -1 188 7 207 69 0 0 chr11 18768418 18768447 -132015106 + (TC)n Simple_repeat Simple_repeat 2 30 0 2155 114 0 0 chr11 18768447 18768728 -132014825 - AluSx SINE Alu -31 281 1 310 242 233 41 chr11 18768927 18769022 -132014531 + MIR SINE MIR 2 77 -185 375 41 0 0 chr11 18769022 18769071 -132014482 + (TG)n Simple_repeat Simple_repeat 2 50 0 310 242 233 41 chr11 18769071 18769194 -132014359 + MIR SINE MIR 77 262 0 333 0 0 0 chr11 18769816 18769853 -132013700 + (CA)n Simple_repeat Simple_repeat 2 38 0 2745 143 26 5 chr11 18770508 18770927 -132012626 + MSTA LTR MaLR 1 428 0 1571 178 0 43 chr11 18770959 18771262 -132012291 + AluJo SINE Alu 13 302 -10 291 287 21 0 chr11 18771976 18772070 -132011483 + MIR SINE MIR 159 254 -8 2838 123 58 65 chr11 18772233 18772467 -132011086 + MER41C LTR ERV1 1 235 -319 2191 103 0 20 chr11 18772467 18772768 -132010785 + AluSg SINE Alu 1 295 -15 2838 123 58 65 chr11 18772768 18772813 -132010740 + MER41C LTR ERV1 235 279 -275 2196 126 7 0 chr11 18772813 18773123 -132010430 + AluSq SINE Alu 1 312 -1 2838 123 58 65 chr11 18773123 18773338 -132010215 + MER41C LTR ERV1 279 493 -61 10610 36 18 1 chr11 18773438 18775399 -132008154 + L1PA6 LINE L1 4178 6153 -1 12966 28 1 0 chr11 18775775 18777278 -132006275 + L1PA4 LINE L1 3622 5125 -1021 7898 30 5 5 chr11 18777378 18778392 -132005161 + L1PA4 LINE L1 5132 6147 -8 5945 238 11 24 chr11 18778423 18778795 -132004758 + L1 LINE L1 2254 2629 -3517 2046 132 3 3 chr11 18778795 18779106 -132004447 + AluSx SINE Alu 1 311 -1 5945 238 11 24 chr11 18779106 18780358 -132003195 + L1 LINE L1 2629 3857 -2289 199 305 102 23 chr11 18781151 18781279 -132002274 - MIR3 SINE MIR -62 146 9 330 282 83 26 chr11 18782293 18782449 -132001104 - MIR SINE MIR -70 192 28 194 363 12 0 chr11 18782942 18783022 -132000531 + L2 LINE L2 3179 3259 -54 210 329 42 54 chr11 18783030 18783197 -132000356 - MIR3 SINE MIR -37 171 7 341 325 115 24 chr11 18783262 18783514 -132000039 + MLT1J LTR MaLR 7 281 -230 1215 239 39 24 chr11 18783623 18783953 -131999600 + MER2 DNA MER2_type 2 336 -9 915 310 54 35 chr11 18784249 18784434 -131999119 + LTR33 LTR ERVL 31 211 -310 2650 139 31 10 chr11 18784434 18784852 -131998701 - MSTA LTR MaLR -1 427 1 915 310 54 35 chr11 18784852 18785127 -131998426 + LTR33 LTR ERVL 211 500 -21 2678 111 6 0 chr11 18786202 18786564 -131996989 - L1PB1 LINE L1 -2 6149 5786 532 267 9 8 chr11 18786565 18786756 -131996797 - L1PB1 LINE L1 -480 5694 5500 6690 178 10 11 chr11 18786963 18788749 -131994804 - L1P5 LINE L1 -557 5594 3814 1234 228 23 6 chr11 18790138 18790489 -131993064 + L1MB4 LINE L1 5824 6180 0 247 333 0 0 chr11 18791318 18791384 -131992169 + L2 LINE L2 3121 3186 -86 268 255 87 125 chr11 18792622 18792830 -131990723 - L2 LINE L2 -5 3267 3068 6559 220 16 23 chr11 18794098 18796039 -131987514 + L1M2 LINE L1 2504 4522 -2326 4583 50 10 0 chr11 18796145 18796723 -131986830 - L1PA4 LINE L1 -1 6154 5571 13344 74 4 8 chr11 18796723 18798575 -131984978 - L1P LINE L1 -4300 1846 1 9824 200 13 8 chr11 18798575 18801323 -131982230 + L1PB1 LINE L1 2875 5637 -514 2573 109 3 0 chr11 18801341 18801708 -131981845 + L1PB1 LINE L1 5782 6149 -2 658 289 124 38 chr11 18802770 18803028 -131980525 - LTR33 LTR ERVL -10 511 277 2343 153 36 14 chr11 18803028 18803447 -131980106 + MSTA LTR MaLR 1 428 0 658 289 124 38 chr11 18803447 18803631 -131979922 - LTR33 LTR ERVL -244 277 31 238 331 42 54 chr11 18804253 18804419 -131979134 + MIR3 SINE MIR 8 171 -37 287 388 20 10 chr11 18804431 18804529 -131979024 - L2 LINE L2 -40 3232 3134 323 366 57 0 chr11 18805007 18805182 -131978371 + MIR SINE MIR 15 199 -63 1103 229 35 9 chr11 18808372 18808713 -131974840 + L1MB4 LINE L1 5825 6174 -6 2043 114 7 17 chr11 18810023 18810060 -131973493 - AluSc SINE Alu -14 295 259 378 0 0 0 chr11 18810060 18810102 -131973451 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 2043 114 7 17 chr11 18810102 18810362 -131973191 - AluSc SINE Alu -50 259 1 251 263 81 124 chr11 18811184 18811393 -131972160 - L2 LINE L2 -5 3267 3068 217 287 17 87 chr11 18813511 18813565 -131969988 + L2 LINE L2 631 674 -2640 2604 98 14 0 chr11 18813565 18813921 -131969632 - THE1B LTR MaLR -3 361 1 217 287 17 87 chr11 18813921 18813981 -131969572 + L2 LINE L2 674 737 -2577 1638 233 75 89 chr11 18813984 18814808 -131968745 - L1MD2 LINE L1 -13 6346 5534 326 226 59 0 chr11 18814837 18814939 -131968614 - L1MD2 LINE L1 -738 5428 5321 980 302 129 22 chr11 18814939 18815588 -131967965 + L2 LINE L2 1122 1840 -1474 198 0 0 0 chr11 18815736 18815758 -131967795 + (TA)n Simple_repeat Simple_repeat 2 23 0 201 259 0 0 chr11 18815918 18815976 -131967577 + (TA)n Simple_repeat Simple_repeat 2 59 0 2436 84 6 11 chr11 18816011 18816549 -131967004 - L1PA10 LINE L1 -1 6167 5520 2210 112 71 0 chr11 18817144 18817484 -131966069 - THE1B LTR MaLR 0 364 1 837 310 86 7 chr11 18817811 18818243 -131965310 - LTR33 LTR ERVL -16 505 40 1289 217 35 26 chr11 18818548 18818889 -131964664 - MER2 DNA MER2_type 0 344 1 272 300 0 0 chr11 18819091 18819171 -131964382 - MLT1J2 LTR MaLR -302 148 69 227 389 0 0 chr11 18819381 18819471 -131964082 + MIR3 SINE MIR 82 171 -37 1556 176 82 17 chr11 18819480 18819650 -131963903 - THE1C LTR MaLR 0 375 218 213 39 0 0 chr11 18819650 18819676 -131963877 + (GA)n Simple_repeat Simple_repeat 1 26 0 1556 176 82 17 chr11 18819676 18819857 -131963696 - THE1C LTR MaLR -157 218 1 278 289 24 24 chr11 18819859 18819942 -131963611 - L2 LINE L2 -52 3261 3179 273 302 111 35 chr11 18820568 18820740 -131962813 + MIR SINE MIR 15 199 -63 183 207 35 35 chr11 18821177 18821235 -131962318 + L3 LINE CR1 1355 1412 -165 230 314 29 0 chr11 18821357 18821427 -131962126 - L2 LINE L2 0 3313 3242 2345 189 40 7 chr11 18821445 18821889 -131961664 - MER66B LTR ERV1 -27 459 1 663 163 0 24 chr11 18821890 18822013 -131961540 - MER66B LTR ERV1 -366 120 1 249 303 34 11 chr11 18822384 18822473 -131961080 + MIR SINE MIR 98 188 -74 3576 130 25 11 chr11 18823792 18824429 -131959124 + Tigger3(Golem) DNA MER2_type 2379 3024 -5 29 28 0 0 chr11 18824810 18824846 -131958707 + AT_rich Low_complexity Low_complexity 1 36 0 248 268 86 129 chr11 18824949 18825158 -131958395 - L2 LINE L2 -5 3267 3068 206 238 0 125 chr11 18825543 18825623 -131957930 + MIR3 SINE MIR 4 73 -135 1565 35 5 5 chr11 18826395 18826596 -131956957 - L1PA5 LINE L1 -214 5940 5740 1424 63 11 11 chr11 18826596 18826784 -131956769 + L1PA5 LINE L1 5964 6154 0 29704 124 59 10 chr11 18827051 18831907 -131951646 + L1PB1 LINE L1 3 4622 -1529 189 0 0 0 chr11 18831907 18831928 -131951625 + (TAA)n Simple_repeat Simple_repeat 2 22 0 29704 124 59 10 chr11 18831928 18832567 -131950986 + L1PB1 LINE L1 4622 5229 -922 264 30 0 0 chr11 18832567 18832600 -131950953 + (CA)n Simple_repeat Simple_repeat 1 33 0 29704 124 59 10 chr11 18832600 18832960 -131950593 + L1PB1 LINE L1 5229 6151 0 406 224 0 54 chr11 18832960 18833107 -131950446 - L1MA7 LINE L1 -151 6140 6002 * 1819 249 49 51 chr11 18833105 18833577 -131949976 - L1M4 LINE L1 -2203 3943 3472 1998 94 86 0 chr11 18833577 18833844 -131949709 + AluSx SINE Alu 1 290 -22 1819 249 49 51 chr11 18833844 18834270 -131949283 - L1M4 LINE L1 -2674 3472 3047 761 273 33 38 chr11 18834279 18834681 -131948872 - L1M4 LINE L1 -2583 3563 3162 2379 57 0 60 chr11 18834681 18834997 -131948556 - AluY SINE Alu -14 297 1 761 273 33 38 chr11 18834997 18835045 -131948508 - L1M4 LINE L1 -2984 3162 3115 2914 212 53 2 chr11 18835046 18835663 -131947890 - MER44D DNA MER2_type 0 605 85 442 142 8 17 chr11 18835680 18835800 -131947753 - L1 LINE L1 -2923 3223 3105 * 4519 161 22 69 chr11 18835796 18836682 -131946871 + L1MA8 LINE L1 5227 6054 -237 2194 127 7 0 chr11 18836682 18836982 -131946571 - AluSx SINE Alu -10 302 1 4519 161 22 69 chr11 18836982 18837188 -131946365 + L1MA8 LINE L1 6054 6268 -23 1275 241 35 5 chr11 18837211 18837589 -131945964 - L1MC/D LINE L1 -542 5817 5429 * 1638 141 11 11 chr11 18837583 18837853 -131945700 - MLT1B LTR MaLR -120 270 1 2292 91 0 3 chr11 18839468 18839766 -131943787 + AluSq SINE Alu 1 297 -16 1696 113 12 0 chr11 18839768 18840008 -131943545 + AluSq SINE Alu 51 293 -20 209 196 0 0 chr11 18840207 18840253 -131943300 + T-rich Low_complexity Low_complexity 2 47 0 3000 104 97 30 chr11 18841086 18841127 -131942426 + L1PB1 LINE L1 5656 5693 -458 2214 112 3 0 chr11 18841127 18841422 -131942131 - AluSx SINE Alu -16 296 1 3000 104 97 30 chr11 18841422 18841843 -131941710 + L1PB1 LINE L1 5693 6149 -2 771 303 111 20 chr11 18842369 18842828 -131940725 - LTR33 LTR ERVL -10 511 11 319 291 122 30 chr11 18843099 18843336 -131940217 - MLT1J LTR MaLR -110 401 143 2217 108 3 3 chr11 18843418 18843715 -131939838 + AluSx SINE Alu 1 297 -15 204 239 22 22 chr11 18844002 18844048 -131939505 - L2 LINE L2 -46 3226 3181 349 300 9 0 chr11 18844631 18844741 -131938812 + MIR SINE MIR 82 192 -70 1211 134 0 16 chr11 18845072 18845238 -131938315 - AluSg/x SINE Alu -13 299 135 2055 100 21 14 chr11 18845238 18845529 -131938024 - AluSx SINE Alu -19 293 1 1211 134 0 16 chr11 18845529 18845549 -131938004 - AluSg/x SINE Alu -177 135 116 198 233 0 0 chr11 18845549 18845592 -131937961 - MER5B DNA MER1_type -133 45 3 4653 112 148 93 chr11 18845610 18847024 -131936529 - pTR5 LTR ERV1 0 2438 741 2312 73 0 70 chr11 18847131 18847459 -131936094 + AluSp SINE Alu 1 305 -8 571 293 53 0 chr11 18847909 18848097 -131935456 - MIR SINE MIR -64 198 1 2450 55 0 3 chr11 18848634 18848925 -131934628 - AluY SINE Alu -21 290 1 566 184 0 19 chr11 18849446 18849549 -131934004 - AluJ SINE Alu -13 299 199 920 168 0 7 chr11 18849550 18849699 -131933854 - AluJ SINE Alu -164 148 1 5137 149 25 20 chr11 18850412 18851415 -131932138 + L1MB2 LINE L1 5164 6171 0 1999 119 13 51 chr11 18851447 18851758 -131931795 - AluSq SINE Alu -14 299 1 2201 97 3 24 chr11 18851770 18852068 -131931485 - AluSc SINE Alu -17 292 1 201 244 115 26 chr11 18852192 18852270 -131931283 + MIR3 SINE MIR 118 202 -6 934 116 0 51 chr11 18852791 18852929 -131930624 - FLAM_C SINE Alu 0 133 3 581 311 8 79 chr11 18852977 18853218 -131930335 - L2 LINE L2 -49 3223 3000 2349 112 0 0 chr11 18853361 18853665 -131929888 - AluSx SINE Alu -8 304 1 23 0 0 0 chr11 18853687 18853710 -131929843 + AT_rich Low_complexity Low_complexity 1 23 0 696 252 73 32 chr11 18853717 18853935 -131929618 + MIR SINE MIR 23 249 -13 216 0 0 0 chr11 18853997 18854021 -131929532 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 1004 184 31 5 chr11 18854320 18854516 -131929037 - MER3 DNA MER1_type 0 209 9 362 283 128 16 chr11 18854669 18854856 -131928697 + L2 LINE L2 2447 2654 -660 186 43 0 0 chr11 18855507 18855530 -131928023 + (A)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr11 18856212 18856235 -131927318 + AT_rich Low_complexity Low_complexity 1 23 0 1668 174 26 22 chr11 18856627 18856938 -131926615 + AluJb SINE Alu 1 312 0 262 261 278 0 chr11 18857169 18857284 -131926269 + L1MEd LINE L1 19 165 -5954 195 129 0 0 chr11 18857285 18857316 -131926237 + (GA)n Simple_repeat Simple_repeat 2 32 0 571 198 21 0 chr11 18857333 18857429 -131926124 + FAM SINE Alu 44 141 -44 203 346 22 52 chr11 18858455 18858591 -131924962 - L2 LINE L2 -3 3310 3179 452 207 71 57 chr11 18858849 18858989 -131924564 - MARNA DNA Mariner -222 364 223 550 136 102 0 chr11 18859010 18859098 -131924455 - FRAM SINE Alu -10 166 70 216 0 0 0 chr11 18859099 18859123 -131924430 + (TG)n Simple_repeat Simple_repeat 1 24 0 183 129 0 0 chr11 18859291 18859322 -131924231 + (TG)n Simple_repeat Simple_repeat 2 32 0 239 150 0 83 chr11 18859347 18859407 -131924146 - AluJo SINE Alu -163 139 85 235 298 79 35 chr11 18859420 18859534 -131924019 - MARNA DNA Mariner -392 194 76 907 241 109 53 chr11 18860307 18860719 -131922834 + MLT1J2 LTR MaLR 1 435 -11 459 284 45 0 chr11 18860722 18860856 -131922697 + MIR SINE MIR 107 246 -16 1677 177 10 7 chr11 18861004 18861298 -131922255 + AluJo SINE Alu 1 295 -17 1992 136 34 0 chr11 18861301 18861596 -131921957 + AluSx SINE Alu 1 305 -7 1630 155 86 31 chr11 18862569 18862859 -131920694 - AluJb SINE Alu -6 306 1 857 88 0 9 chr11 18863398 18863511 -131920042 - AluSg/x SINE Alu -23 287 176 2074 109 44 14 chr11 18863531 18863824 -131919729 - AluY SINE Alu -9 302 1 241 223 32 75 chr11 18864772 18864866 -131918687 - MIR SINE MIR -87 121 32 1410 108 61 0 chr11 18865102 18865315 -131918238 + MER30 DNA MER1_type 5 230 0 2367 89 0 16 chr11 18868161 18868474 -131915079 + AluSq SINE Alu 1 308 -5 2049 105 11 11 chr11 18868574 18868860 -131914693 + AluSx SINE Alu 1 286 -26 30 0 0 0 chr11 18868860 18868890 -131914663 + AT_rich Low_complexity Low_complexity 1 30 0 2651 119 26 50 chr11 18870316 18870779 -131912774 + L1MA5A LINE L1 5846 6297 0 2240 84 3 53 chr11 18870888 18871208 -131912345 + AluSx SINE Alu 3 306 -6 2283 106 10 6 chr11 18871661 18871972 -131911581 + AluSx SINE Alu 1 312 0 383 333 56 47 chr11 18872191 18872404 -131911149 - MIR SINE MIR -28 234 20 269 318 0 0 chr11 18872458 18872568 -131910985 + C-rich Low_complexity Low_complexity 1 110 0 280 344 54 11 chr11 18872700 18872886 -131910667 + L2 LINE L2 1859 2052 -1262 1896 112 4 8 chr11 18874318 18874586 -131908967 + AluSx SINE Alu 34 300 -12 501 246 75 40 chr11 18874623 18874822 -131908731 - L2 LINE L2 -6 3307 3102 2226 98 17 0 chr11 18874931 18875227 -131908326 - AluSp SINE Alu -12 301 1 1195 107 51 0 chr11 18876321 18876498 -131907055 - L1MC/D LINE L1 -715 5618 5433 216 0 0 0 chr11 18876499 18876523 -131907030 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2034 102 11 14 chr11 18876526 18876811 -131906742 - AluY SINE Alu -27 284 1 274 370 79 0 chr11 18877291 18877418 -131906135 + MIR3 SINE MIR 51 187 -21 227 128 21 21 chr11 18877641 18877688 -131905865 + MIR SINE MIR 180 226 -36 234 357 105 38 chr11 18877788 18877998 -131905555 + L2 LINE L2 3030 3253 -19 208 139 0 0 chr11 18878509 18878545 -131905008 + (A)n Simple_repeat Simple_repeat 1 36 0 2097 144 0 3 chr11 18879312 18879625 -131903928 + AluJb SINE Alu 1 312 0 269 237 34 0 chr11 18879641 18879700 -131903853 + L3 LINE CR1 1514 1574 -3 881 215 0 0 chr11 18880140 18880289 -131903264 + FRAM SINE Alu 1 146 -30 1852 166 0 7 chr11 18880498 18880800 -131902753 + AluJb SINE Alu 1 300 -12 636 197 8 34 chr11 18881983 18882100 -131901453 + MER81 DNA DNA 1 114 0 2366 90 0 0 chr11 18882291 18882590 -131900963 - AluSx SINE Alu -13 299 1 1670 159 48 3 chr11 18883999 18884289 -131899264 + LTR23 LTR ERV1 2 304 -133 451 179 253 0 chr11 18884289 18884384 -131899169 + FLAM_C SINE Alu 1 119 -14 2352 95 0 0 chr11 18884413 18884707 -131898846 + AluSc SINE Alu 1 294 -15 1390 131 20 121 chr11 18884707 18885013 -131898540 + AluJo SINE Alu 1 275 -37 1028 128 0 0 chr11 18885055 18885196 -131898357 + AluSx SINE Alu 30 170 -142 232 314 29 0 chr11 18885662 18885732 -131897821 - L2 LINE L2 0 3272 3201 241 320 80 16 chr11 18886051 18886176 -131897377 + MIR SINE MIR 21 153 -109 24 0 0 0 chr11 18886645 18886669 -131896884 + AT_rich Low_complexity Low_complexity 1 24 0 2233 117 51 31 chr11 18887442 18887793 -131895760 + THE1B LTR MaLR 1 358 -6 1613 178 7 46 chr11 18887831 18888134 -131895419 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr11 18888134 18888155 -131895398 + AT_rich Low_complexity Low_complexity 1 21 0 997 92 15 0 chr11 18888705 18888836 -131894717 - AluSq/x SINE Alu -179 133 1 190 114 0 29 chr11 18889134 18889169 -131894384 + L2 LINE L2 671 704 -2610 2808 224 43 65 chr11 18889212 18889755 -131893798 - L1MD2 LINE L1 -13 6346 5793 2652 55 0 0 chr11 18889755 18890062 -131893491 - AluY SINE Alu -4 307 1 2808 224 43 65 chr11 18890062 18890185 -131893368 - L1MD2 LINE L1 -566 5793 5669 2358 118 8 30 chr11 18890185 18890557 -131892996 - THE1B LTR MaLR 0 364 1 12356 81 3 1 chr11 18890557 18892133 -131891420 - THE1B-int LTR MaLR 0 1580 1 2388 124 8 24 chr11 18892133 18892503 -131891050 - THE1B LTR MaLR 0 364 1 2808 224 43 65 chr11 18892503 18892763 -131890790 - L1MD2 LINE L1 -687 5672 5437 1389 175 34 8 chr11 18892765 18893028 -131890525 - MLT1B LTR MaLR -120 270 1 27 49 0 0 chr11 18893059 18893100 -131890453 + AT_rich Low_complexity Low_complexity 1 41 0 7326 169 13 171 chr11 18893340 18895799 -131887754 + L1M2 LINE L1 1 2847 -4002 240 35 0 0 chr11 18895799 18895828 -131887725 + (GGGAA)n Simple_repeat Simple_repeat 4 32 0 2108 76 0 0 chr11 18895828 18896092 -131887461 + AluY SINE Alu 44 307 -4 5522 198 45 27 chr11 18896113 18897079 -131886474 + L1M2 LINE L1 2931 3929 -2919 1705 158 10 24 chr11 18897079 18897371 -131886182 + AluJb SINE Alu 3 290 -22 5522 198 45 27 chr11 18897371 18897769 -131885784 + L1M2 LINE L1 3929 4319 -2529 1917 222 77 10 chr11 18897764 18897842 -131885711 + L1M1 LINE L1 15 86 -7479 * 204 40 0 0 chr11 18897842 18897867 -131885686 + (CA)n Simple_repeat Simple_repeat 2 26 0 1917 222 77 10 chr11 18897867 18898270 -131885283 + L1M1 LINE L1 86 528 -7037 2432 148 35 33 chr11 18898270 18898782 -131884771 + MLT2A2 LTR ERVL 1 510 -5 232 253 32 63 chr11 18899145 18899240 -131884313 - MIR3 SINE MIR -14 194 103 24 32 0 0 chr11 18902418 18902449 -131881104 + AT_rich Low_complexity Low_complexity 1 31 0 2491 74 0 0 chr11 18902449 18902748 -131880805 + AluY SINE Alu 1 299 -12 2178 120 13 3 chr11 18903005 18903305 -131880248 + AluSx SINE Alu 1 303 -9 18253 164 16 22 chr11 18904652 18906531 -131877022 + L1M1 LINE L1 524 2413 -5152 1524 183 95 0 chr11 18906531 18906794 -131876759 + AluSx SINE Alu 1 288 -24 18253 164 16 22 chr11 18906794 18907081 -131876472 + L1M1 LINE L1 2413 2700 -4865 1111 209 153 4 chr11 18907081 18907330 -131876223 + AluJb SINE Alu 3 288 -14 18253 164 16 22 chr11 18907330 18907945 -131875608 + L1M1 LINE L1 2700 3317 -4248 185 0 40 0 chr11 18907945 18907970 -131875583 + (TTG)n Simple_repeat Simple_repeat 2 27 0 18253 164 16 22 chr11 18907970 18910368 -131873185 + L1M1 LINE L1 3317 5671 -1894 7332 198 111 18 chr11 18910368 18911948 -131871605 - MER52A LTR ERV1 -29 1726 1 231 307 109 15 chr11 18911950 18912087 -131871466 - L1P3 LINE L1 -523 5649 5500 246 62 0 0 chr11 18912237 18912269 -131871284 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1777 124 37 44 chr11 18912302 18912600 -131870953 + AluJb SINE Alu 3 298 -14 508 118 59 6 chr11 18912911 18913080 -131870473 + (TG)n Simple_repeat Simple_repeat 2 179 0 659 95 63 0 chr11 18913105 18913263 -131870290 + (TG)n Simple_repeat Simple_repeat 2 169 0 234 150 0 0 chr11 18913321 18913361 -131870192 + (GA)n Simple_repeat Simple_repeat 2 41 0 22 56 0 0 chr11 18913363 18913399 -131870154 + AT_rich Low_complexity Low_complexity 1 36 0 284 260 91 87 chr11 18913533 18913787 -131869766 - L1ME4a LINE L1 -25 6096 5842 471 285 8 0 chr11 18913970 18914100 -131869453 + L2 LINE L2 3183 3313 0 3799 190 4 31 chr11 18914837 18915024 -131868529 - L1P3 LINE L1 -973 5173 4982 1865 147 45 3 chr11 18915024 18915316 -131868237 - AluSx SINE Alu -8 304 1 3799 190 4 31 chr11 18915316 18915934 -131867619 - L1P3 LINE L1 -1164 4982 4390 * 5483 111 71 19 chr11 18915926 18916215 -131867338 + L1PA16 LINE L1 5179 5451 -715 1837 183 0 16 chr11 18916215 18916532 -131867021 + AluJo SINE Alu 1 312 0 5483 111 71 19 chr11 18916532 18917176 -131866377 + L1PA16 LINE L1 5451 6156 -10 2123 93 4 4 chr11 18918045 18918363 -131865190 + AluSc SINE Alu 1 318 0 1386 308 88 31 chr11 18918364 18919240 -131864313 - L2 LINE L2 -673 2641 1716 243 288 68 0 chr11 18919273 18919346 -131864207 - L2 LINE L2 -27 3245 3168 294 293 9 52 chr11 18919466 18919582 -131863971 + MIR SINE MIR 25 135 -127 1710 140 80 0 chr11 18919840 18920126 -131863427 + AluSx SINE Alu 1 309 -3 2163 132 3 0 chr11 18920232 18920542 -131863011 + AluSx SINE Alu 1 311 -1 1857 172 3 3 chr11 18920615 18920905 -131862648 - AluJo SINE Alu -22 290 1 236 206 95 16 chr11 18921403 18921466 -131862087 - L2 LINE L2 -4 3268 3201 1946 144 7 7 chr11 18921927 18922232 -131861321 - AluJo SINE Alu -7 305 1 237 330 0 10 chr11 18923307 18923410 -131860143 + MIR SINE MIR 120 221 -41 2372 226 45 44 chr11 18923462 18923572 -131859981 + L1ME3 LINE L1 5434 5542 -620 1765 171 0 13 chr11 18923572 18923877 -131859676 - AluJo SINE Alu -11 301 1 2372 226 45 44 chr11 18923877 18924492 -131859061 + L1ME3 LINE L1 5542 6160 -2 295 321 48 37 chr11 18924901 18925088 -131858465 - MER5A DNA MER1_type 0 189 1 303 66 16 49 chr11 18925879 18925940 -131857613 + (TTTC)n Simple_repeat Simple_repeat 1 59 0 1411 182 72 45 chr11 18925945 18926236 -131857317 - AluJo SINE Alu -8 304 6 1521 257 53 42 chr11 18927237 18927531 -131856022 - L1MC4a LINE L1 -1903 5905 5616 2054 147 0 0 chr11 18927531 18927831 -131855722 - AluSx SINE Alu -12 300 1 1521 257 53 42 chr11 18927831 18928175 -131855378 - L1MC4a LINE L1 -2192 5616 5260 3368 65 11 23 chr11 18928393 18928866 -131854687 - L1MA2 LINE L1 0 6304 5838 270 298 69 53 chr11 18929027 18929215 -131854338 - L1MC4a LINE L1 -1209 4937 4747 535 285 141 9 chr11 18929370 18929710 -131853843 + L2 LINE L2 1820 2204 -1110 1301 249 59 23 chr11 18929789 18930272 -131853281 - LTR48B LTR ERV1 0 644 115 372 288 108 0 chr11 18930244 18930355 -131853198 - MER34 LTR ERV1 -419 123 1 * 5289 146 23 37 chr11 18930385 18931789 -131851764 + L1PB4 LINE L1 4770 6152 -4 1713 195 141 37 chr11 18931970 18932432 -131851121 - MLT2B1 LTR ERVL -2 518 9 1911 171 0 3 chr11 18932442 18932746 -131850807 + AluJb SINE Alu 1 303 -9 698 254 16 5 chr11 18933694 18933879 -131849674 + LTR41 LTR ERVL 1 187 -586 250 290 7 0 chr11 18934068 18934138 -131849415 - MLT1C LTR MaLR -301 73 1 405 162 29 48 chr11 18934395 18934500 -131849053 + LTR41 LTR ERVL 665 767 -6 2034 130 3 3 chr11 18936405 18936697 -131846856 - AluSx SINE Alu -7 305 14 379 253 110 14 chr11 18936697 18936843 -131846710 + MER5B DNA MER1_type 16 175 -3 281 278 105 37 chr11 18936882 18937044 -131846509 + MIR SINE MIR 20 192 -70 733 154 8 0 chr11 18938263 18938380 -131845173 - 5S rRNA rRNA 0 121 4 410 197 0 0 chr11 18938972 18939038 -131844515 + AluJ/FLAM SINE Alu 1 66 -236 1451 211 0 10 chr11 18938978 18939277 -131844276 + AluJo SINE Alu 7 302 -10 237 108 0 0 chr11 18939534 18939571 -131843982 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 793 197 8 8 chr11 18939583 18939842 -131843711 + CT-rich Low_complexity Low_complexity 1 259 0 751 96 32 0 chr11 18939963 18940088 -131843465 + C-rich Low_complexity Low_complexity 4 132 0 1436 208 11 4 chr11 18940089 18940368 -131843185 - AluJb SINE Alu -31 281 1 1033 266 77 27 chr11 18940369 18940734 -131842819 - L2 LINE L2 -1880 1434 1052 255 316 9 61 chr11 18941041 18941155 -131842398 + L2 LINE L2 3165 3272 0 1103 301 79 7 chr11 18942958 18943376 -131840177 + L2 LINE L2 2530 2977 -337 315 313 40 13 chr11 18943422 18943572 -131839981 - L2 LINE L2 -2592 722 569 1805 149 10 3 chr11 18943635 18943931 -131839622 + AluJo SINE Alu 1 298 -14 205 241 336 26 chr11 18945009 18945125 -131838428 - MIR3 SINE MIR -54 154 3 21 0 0 0 chr11 18946046 18946067 -131837486 + AT_rich Low_complexity Low_complexity 1 21 0 2529 45 0 3 chr11 18946238 18946549 -131837004 - AluY SINE Alu -1 310 1 1828 91 4 4 chr11 18946962 18947215 -131836338 + AluSq SINE Alu 50 302 -11 601 209 0 8 chr11 18948267 18948401 -131835152 - AluY SINE Alu -13 298 166 583 148 0 30 chr11 18948522 18948633 -131834920 - MER5A DNA MER1_type -79 110 4 343 322 40 7 chr11 18950029 18950178 -131833375 + LTR16C LTR ERVL 336 489 -2 604 159 28 19 chr11 18950551 18950658 -131832895 + ERVL LTR ERVL 4510 4617 -1147 265 311 14 0 chr11 18950703 18950777 -131832776 + MIR SINE MIR 25 99 -163 35 24 0 0 chr11 18951428 18951470 -131832083 + AT_rich Low_complexity Low_complexity 1 42 0 2327 75 3 3 chr11 18953362 18953668 -131829885 - AluSg SINE Alu 0 310 5 411 221 93 76 chr11 18953809 18953834 -131829719 + MER5B DNA MER1_type 1 24 -154 1855 129 3 3 chr11 18953834 18954121 -131829432 - AluSx SINE Alu -12 300 14 411 221 93 76 chr11 18954121 18954267 -131829286 + MER5B DNA MER1_type 24 175 -3 241 237 61 53 chr11 18954306 18954420 -131829133 + MIR SINE MIR 20 134 -128 733 154 8 0 chr11 18955710 18955827 -131827726 - 5S rRNA rRNA 0 121 4 683 202 25 0 chr11 18956982 18957101 -131826452 + FLAM_A SINE Alu 1 122 -11 448 318 11 6 chr11 18957438 18957617 -131825936 + L1M4 LINE L1 3773 3952 -2194 489 271 53 0 chr11 18957685 18957818 -131825735 + Charlie1 DNA MER1_type 1 140 -2621 * 2296 195 55 2 chr11 18957815 18958342 -131825211 + Charlie1 DNA MER1_type 2207 2761 0 1803 156 0 3 chr11 18958418 18958713 -131824840 + AluSx SINE Alu 4 297 -15 413 263 58 49 chr11 18958714 18958964 -131824589 + L1M4 LINE L1 4081 4339 -1807 237 194 14 28 chr11 18959116 18959188 -131824365 + L1M4 LINE L1 4549 4619 -1527 800 172 0 6 chr11 18959205 18959385 -131824168 + CT-rich Low_complexity Low_complexity 1 179 0 1269 207 3 24 chr11 18959385 18959704 -131823849 - AluJb SINE Alu 0 313 1 2120 113 3 0 chr11 18959752 18960052 -131823501 + AluSp SINE Alu 1 301 -12 243 173 0 0 chr11 18960106 18960158 -131823395 + (TA)n Simple_repeat Simple_repeat 2 53 0 2254 78 3 0 chr11 18960159 18960454 -131823099 - AluSq SINE Alu -17 296 1 4704 151 96 21 chr11 18960454 18961302 -131822251 + MER21A LTR ERV1 15 925 -6 2673 202 31 4 chr11 18962089 18962628 -131820925 + MER74A LTR ERVL 1 554 -4 1849 146 0 7 chr11 18962642 18962923 -131820630 - AluJo SINE Alu -31 281 3 375 292 22 0 chr11 18963007 18963096 -131820457 + L1MC4 LINE L1 6614 6704 -1338 885 189 0 6 chr11 18963104 18963273 -131820280 + AluJb SINE Alu 143 310 -2 649 140 0 10 chr11 18963534 18963634 -131819919 + AluY SINE Alu 2 100 -211 1440 215 102 48 chr11 18964078 18964520 -131819033 - MER31B LTR ERV1 0 466 1 261 312 64 6 chr11 18965405 18965562 -131817991 - L1ME LINE L1 -230 5891 5726 1665 154 4 0 chr11 18966365 18966624 -131816929 - AluSx SINE Alu -52 260 1 350 188 23 62 chr11 18966649 18966777 -131816776 - L1MC5 LINE L1 -476 7485 7363 1890 108 4 0 chr11 18967488 18967747 -131815806 - AluSx SINE Alu -52 260 1 1841 101 0 0 chr11 18967852 18968099 -131815454 - AluSx SINE Alu -65 247 1 212 0 36 0 chr11 18968240 18968268 -131815285 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 333 47 0 0 chr11 18968324 18968367 -131815186 + (TG)n Simple_repeat Simple_repeat 2 44 0 211 328 45 0 chr11 18968561 18968628 -131814925 + L2 LINE L2 2985 3054 -218 193 268 152 9 chr11 18968722 18968834 -131814719 + L2 LINE L2 3167 3294 -19 342 145 0 16 chr11 18969145 18969207 -131814346 + FLAM SINE Alu 71 131 -2 189 0 0 0 chr11 18969569 18969590 -131813963 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 811 172 6 50 chr11 18969596 18969776 -131813777 - AluJo SINE Alu -23 289 118 586 194 0 0 chr11 18970523 18970621 -131812932 - FLAM_A SINE Alu -33 109 12 2563 33 0 3 chr11 18970641 18970948 -131812605 + AluY SINE Alu 1 306 -5 225 335 38 16 chr11 18972285 18972470 -131811083 - L1 LINE L1 -1076 5070 4882 257 221 91 13 chr11 18972520 18972597 -131810956 + L1M1 LINE L1 5380 5462 -843 255 210 80 50 chr11 18972597 18972697 -131810856 - L1 LINE L1 -1321 4825 4723 27 29 0 0 chr11 18973153 18973187 -131810366 + AT_rich Low_complexity Low_complexity 1 34 0 827 193 60 0 chr11 18973355 18973505 -131810048 - AluJb SINE Alu -17 295 137 685 259 47 42 chr11 18973540 18973752 -131809801 - MIR SINE MIR -38 224 12 482 211 165 9 chr11 18975603 18975712 -131807841 - L2 LINE L2 0 3313 3188 425 317 150 33 chr11 18976109 18976409 -131807144 - L2 LINE L2 -1198 2116 1782 360 311 185 26 chr11 18976433 18976774 -131806779 - L2 LINE L2 0 3313 2919 2370 43 0 0 chr11 18976901 18977181 -131806372 + LTR5 LTR ERVK 1 280 -689 217 240 192 27 chr11 18977880 18978026 -131805527 + L2 LINE L2 2328 2497 -817 635 165 0 0 chr11 18978524 18978615 -131804938 - AluS SINE Alu -220 92 2 184 240 0 130 chr11 18978900 18979000 -131804553 + MIR SINE MIR 121 207 -55 206 222 111 0 chr11 18979350 18979404 -131804149 + L2 LINE L2 3244 3303 -10 22 0 0 0 chr11 18979848 18979870 -131803683 + AT_rich Low_complexity Low_complexity 1 22 0 248 182 80 147 chr11 18979923 18980148 -131803405 + L1ME4a LINE L1 5812 6021 -100 805 154 23 8 chr11 18980640 18980770 -131802783 - AluJb SINE Alu -179 133 2 2031 126 0 7 chr11 18982147 18982457 -131801096 - AluSx SINE Alu -4 308 1 667 224 20 27 chr11 18982550 18982697 -131800856 - MER45A DNA AcHobo -23 155 10 180 0 0 0 chr11 18984585 18984605 -131798948 + (TG)n Simple_repeat Simple_repeat 2 21 0 670 223 60 49 chr11 18984617 18984801 -131798752 + MER20 DNA MER1_type 4 189 -30 542 301 6 0 chr11 18985062 18985238 -131798315 + L1ME2 LINE L1 5988 6164 0 2949 114 27 5 chr11 18985345 18985783 -131797770 - MER83 LTR ERV1 0 448 1 1604 162 7 32 chr11 18986126 18986434 -131797119 - AluJb SINE Alu -12 300 1 2283 79 3 0 chr11 18986464 18986754 -131796799 + AluSp SINE Alu 2 292 -21 362 276 155 35 chr11 18987082 18987256 -131796297 - MIR SINE MIR -34 228 34 1303 176 57 0 chr11 18987418 18987662 -131795891 + MER58B DNA MER1_type 56 313 -28 214 299 0 0 chr11 18987680 18987747 -131795806 + MER5A DNA MER1_type 4 70 -119 188 371 52 0 chr11 18988948 18989045 -131794508 - MER5A DNA MER1_type -81 108 7 1656 81 0 0 chr11 18990175 18990386 -131793167 - AluSq SINE Alu -15 298 88 1549 108 10 0 chr11 18990875 18991079 -131792474 - AluSq SINE Alu -106 207 2 5181 74 12 0 chr11 18991080 18991927 -131791626 - L1P3 LINE L1 -665 5489 4637 1628 66 21 0 chr11 18991944 18992269 -131791284 - L1P3 LINE L1 -683 5489 5160 5801 76 4 0 chr11 18992273 18993076 -131790477 - L1P3 LINE L1 -1511 4635 3830 395 242 23 79 chr11 18993788 18994003 -131789550 - L1ME4a LINE L1 -195 5926 5724 665 184 0 57 chr11 18994092 18994233 -131789320 - FLAM_C SINE Alu -10 133 1 983 147 0 0 chr11 18994403 18994539 -131789014 + AluSq/x SINE Alu 1 136 -176 2226 67 21 3 chr11 18994541 18994824 -131788729 + AluY SINE Alu 1 288 -23 257 204 83 46 chr11 18995264 18995372 -131788181 - L1MC4 LINE L1 -20 8022 7911 32 0 0 0 chr11 18995482 18995514 -131788039 + AT_rich Low_complexity Low_complexity 1 32 0 459 276 37 14 chr11 18995587 18995864 -131787689 - L1MC5 LINE L1 -393 7415 7230 290 153 17 0 chr11 18997279 18997338 -131786215 + (CA)n Simple_repeat Simple_repeat 1 60 0 26 50 0 0 chr11 18998329 18998369 -131785184 + AT_rich Low_complexity Low_complexity 1 40 0 1995 109 3 40 chr11 18998369 18998672 -131784881 - AluSx SINE Alu -20 292 1 268 298 87 19 chr11 18999635 18999843 -131783710 - L1ME4a LINE L1 -102 6019 5798 2182 107 0 10 chr11 18999949 19000263 -131783290 - AluSx SINE Alu 0 312 1 302 335 187 62 chr11 19000565 19000627 -131782926 - L2 LINE L2 -25 3247 3194 1937 139 24 14 chr11 19000627 19000922 -131782631 - AluSx SINE Alu -10 302 5 302 335 187 62 chr11 19000922 19001116 -131782437 - L2 LINE L2 -78 3194 2959 223 196 59 0 chr11 19001541 19001592 -131781961 + L2 LINE L2 3256 3309 -4 31 26 0 0 chr11 19002088 19002126 -131781427 + AT_rich Low_complexity Low_complexity 1 38 0 809 229 6 33 chr11 19002139 19002322 -131781231 + AluJo SINE Alu 1 178 -134 2126 126 14 0 chr11 19002452 19002745 -131780808 - AluSx SINE Alu -15 297 1 1675 161 9 63 chr11 19002841 19003157 -131780396 + AluSx SINE Alu 1 299 -13 349 256 13 0 chr11 19003226 19003304 -131780249 - MER2 DNA MER2_type 0 345 267 359 174 45 61 chr11 19003340 19003472 -131780081 - MER2 DNA MER2_type -150 195 66 1235 311 108 24 chr11 19005243 19005882 -131777671 - L3 LINE CR1 -7 1570 878 24 32 0 0 chr11 19006079 19006110 -131777443 + AT_rich Low_complexity Low_complexity 1 31 0 346 253 8 13 chr11 19006434 19006523 -131777030 - MIR SINE MIR -105 103 11 1193 97 11 6 chr11 19056564 19056740 -131726813 - AluSx SINE Alu -108 204 28 326 266 201 7 chr11 19056796 19056935 -131726618 + MIR SINE MIR 53 218 -44 2063 114 3 3 chr11 19056941 19057238 -131726315 + AluSx SINE Alu 1 297 -15 1844 134 4 0 chr11 19057242 19057517 -131726036 + AluSx SINE Alu 1 276 -36 25 31 0 0 chr11 19057521 19057553 -131726000 + AT_rich Low_complexity Low_complexity 1 32 0 1838 166 3 6 chr11 19057653 19057966 -131725587 + AluJo SINE Alu 1 312 0 2268 84 3 7 chr11 19058256 19058564 -131724989 + AluSp SINE Alu 5 311 -2 1902 113 6 53 chr11 19058571 19058716 -131724837 + AluSg SINE Alu 1 151 -159 2295 53 0 13 chr11 19058716 19059017 -131724536 + AluY SINE Alu 1 297 -14 1902 113 6 53 chr11 19059017 19059191 -131724362 + AluSg SINE Alu 151 305 -5 196 264 29 25 chr11 19060903 19060982 -131722571 + MIR SINE MIR 31 103 -105 780 191 0 8 chr11 19061492 19061623 -131721930 - AluJo SINE Alu -175 137 8 216 0 0 0 chr11 19061635 19061659 -131721894 + (TA)n Simple_repeat Simple_repeat 2 25 0 2047 109 3 3 chr11 19061659 19061953 -131721600 - AluSg SINE Alu -16 294 1 2059 113 3 7 chr11 19061956 19062291 -131721262 - AluSx SINE Alu 0 312 1 2195 53 7 36 chr11 19062299 19062603 -131720950 - AluY SINE Alu -16 295 1 1948 123 14 0 chr11 19062885 19063177 -131720376 - AluSx SINE Alu -16 296 1 347 315 20 27 chr11 19063184 19063333 -131720220 - MIR3 SINE MIR -58 150 3 181 274 88 53 chr11 19064084 19064197 -131719356 + L2 LINE L2 2437 2553 -761 2014 116 3 0 chr11 19064268 19064553 -131719000 + AluSq SINE Alu 1 286 -27 25 0 0 0 chr11 19064560 19064585 -131718968 + AT_rich Low_complexity Low_complexity 1 25 0 215 286 143 24 chr11 19064585 19064753 -131718800 + L2 LINE L2 2702 2889 -425 2652 209 34 12 chr11 19065099 19065739 -131717814 - L1MC4 LINE L1 -145 7897 7244 885 183 0 23 chr11 19065740 19065915 -131717638 - FRAM SINE Alu 0 176 6 620 200 171 18 chr11 19065917 19066087 -131717466 - L1MC4 LINE L1 -795 7247 7052 1843 143 0 3 chr11 19066121 19066414 -131717139 - AluJb SINE Alu 0 312 21 24 0 0 0 chr11 19066431 19066455 -131717098 + AT_rich Low_complexity Low_complexity 1 24 0 2381 74 0 3 chr11 19066455 19066767 -131716786 - AluY SINE Alu 0 311 1 536 216 5 130 chr11 19066771 19066823 -131716730 - L1ME1 LINE L1 0 6166 6109 1517 144 0 35 chr11 19066823 19067105 -131716448 - AluJb SINE Alu 0 307 35 536 216 5 130 chr11 19067105 19067258 -131716295 - L1ME1 LINE L1 -57 6109 5985 * 810 195 157 49 chr11 19067251 19067426 -131716127 - L1MC4 LINE L1 -1079 6963 6748 1975 128 20 3 chr11 19067426 19067724 -131715829 + AluSx SINE Alu 1 303 -9 810 195 157 49 chr11 19067724 19067815 -131715738 - L1MC4 LINE L1 -1294 6748 6668 828 219 26 0 chr11 19067919 19068074 -131715479 - FRAM SINE Alu -7 159 1 1415 135 0 18 chr11 19068109 19068338 -131715215 - AluJb SINE Alu -7 305 81 197 281 47 16 chr11 19068527 19068591 -131714962 + L2 LINE L2 3230 3295 -18 722 183 8 30 chr11 19068758 19068889 -131714664 + FLAM_A SINE Alu 1 128 -5 531 275 69 6 chr11 19070037 19070197 -131713356 - MIR SINE MIR -14 248 79 875 120 15 8 chr11 19070583 19070716 -131712837 + AluJo SINE Alu 1 134 -178 847 182 0 0 chr11 19071030 19071200 -131712353 - AluJb SINE Alu 0 306 137 570 168 0 7 chr11 19071190 19071399 -131712154 + AluJ SINE Alu 26 282 -30 * 183 80 0 0 chr11 19071401 19071426 -131712127 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 2192 103 0 0 chr11 19071445 19071746 -131711807 - AluSc SINE Alu -8 301 1 28 29 0 0 chr11 19071807 19071842 -131711711 + AT_rich Low_complexity Low_complexity 1 35 0 2198 100 10 0 chr11 19072128 19072428 -131711125 - AluSx SINE Alu -9 303 1 25 51 0 0 chr11 19072494 19072533 -131711020 + AT_rich Low_complexity Low_complexity 1 39 0 1882 112 11 7 chr11 19072710 19072996 -131710557 + AluSx SINE Alu 1 287 -25 6226 113 82 66 chr11 19073324 19073981 -131709572 - Tigger3b DNA MER2_type -1797 1231 545 2248 87 0 3 chr11 19073981 19074281 -131709272 - AluSg SINE Alu 0 310 12 6226 113 82 66 chr11 19074281 19074834 -131708719 - Tigger3b DNA MER2_type -2483 545 2 434 179 60 0 chr11 19075027 19075111 -131708442 + MER117 DNA MER1_type 1 89 -108 2122 104 7 3 chr11 19075111 19075408 -131708145 + AluSq SINE Alu 1 298 -15 992 202 12 0 chr11 19075754 19075927 -131707626 + FAM SINE Alu 1 175 0 325 266 0 25 chr11 19076146 19076225 -131707328 + MER5B DNA MER1_type 29 105 -73 889 108 7 50 chr11 19076267 19076406 -131707147 + FLAM_C SINE Alu 1 133 0 1948 137 0 0 chr11 19076413 19076720 -131706833 + AluSx SINE Alu 1 307 0 280 328 67 22 chr11 19076780 19076914 -131706639 - MIR3 SINE MIR -48 160 21 234 222 0 0 chr11 19077422 19077476 -131706077 + (TA)n Simple_repeat Simple_repeat 2 55 0 791 154 0 70 chr11 19078490 19078633 -131704920 + FLAM_A SINE Alu 1 133 0 1712 173 3 3 chr11 19078891 19079180 -131704373 + AluJo SINE Alu 1 289 -23 684 198 16 16 chr11 19079791 19079917 -131703636 - AluJb SINE Alu -40 272 147 2044 104 0 7 chr11 19079918 19080207 -131703346 + AluSc SINE Alu 1 287 -22 2520 48 0 0 chr11 19080250 19080560 -131702993 + AluY SINE Alu 1 310 -1 507 288 62 99 chr11 19080624 19081009 -131702544 + L2 LINE L2 2902 3272 0 2098 108 3 0 chr11 19081050 19081347 -131702206 - AluSg SINE Alu -12 298 1 1842 157 3 0 chr11 19081347 19081653 -131701900 - AluJo SINE Alu -3 309 3 1240 157 62 16 chr11 19081792 19082034 -131701519 + AluJb SINE Alu 38 290 -22 269 353 66 33 chr11 19082089 19082333 -131701220 - L2 LINE L2 -339 2975 2724 4015 111 84 19 chr11 19082507 19082976 -131700577 - L1MA4 LINE L1 -7 6293 5856 1637 141 53 30 chr11 19082976 19083280 -131700273 - AluJb SINE Alu -1 311 1 1559 106 9 5 chr11 19083280 19083498 -131700055 - AluSx SINE Alu -93 219 1 4015 111 84 19 chr11 19083498 19083721 -131699832 - L1MA4 LINE L1 -443 5857 5555 1343 147 32 9 chr11 19083884 19084102 -131699451 - MLT2B1 LTR ERVL 0 520 298 597 283 40 11 chr11 19084227 19084404 -131699149 + MIR SINE MIR 5 186 -76 208 61 82 122 chr11 19084404 19084453 -131699100 + L2 LINE L2 3214 3260 -12 821 137 23 15 chr11 19084928 19085059 -131698494 - FLAM_C SINE Alu -1 132 1 306 195 13 65 chr11 19085189 19085266 -131698287 - MER21B LTR ERV1 -661 202 130 2211 80 6 10 chr11 19085509 19085822 -131697731 + AluSx SINE Alu 1 312 0 906 130 12 30 chr11 19085833 19086002 -131697551 + AluJb SINE Alu 147 312 0 412 212 10 50 chr11 19086262 19086361 -131697192 - L2 LINE L2 -5 3308 3214 182 171 0 57 chr11 19086366 19086401 -131697152 - MIR SINE MIR -57 151 119 206 318 45 18 chr11 19087275 19087385 -131696168 - L2 LINE L2 -18 3254 3142 195 313 50 30 chr11 19087397 19087496 -131696057 - MIR SINE MIR -55 153 53 344 242 36 18 chr11 19087923 19088088 -131695465 + (CCCCG)n Simple_repeat Simple_repeat 2 169 0 422 272 144 18 chr11 19088190 19088464 -131695089 - L1M4 LINE L1 -2846 4002 1685 2142 110 7 0 chr11 19090255 19090545 -131693008 + AluY SINE Alu 1 292 -19 503 69 0 69 chr11 19091108 19091195 -131692358 - Alu SINE Alu -8 301 221 1515 92 39 0 chr11 19091124 19091330 -131692223 - AluSq SINE Alu -18 295 82 * 2406 84 3 3 chr11 19091329 19091638 -131691915 - AluY SINE Alu -2 309 1 585 136 0 0 chr11 19091649 19091730 -131691823 - AluSq SINE Alu -231 82 2 1426 182 13 50 chr11 19092315 19092617 -131690936 - AluJo SINE Alu -21 291 1 235 271 0 0 chr11 19093206 19093265 -131690288 + G-rich Low_complexity Low_complexity 2 60 0 51 58 0 0 chr11 19093351 19093437 -131690116 + AT_rich Low_complexity Low_complexity 1 86 0 2068 117 21 3 chr11 19093437 19093719 -131689834 - AluSq SINE Alu -26 287 1 2576 65 0 0 chr11 19093742 19094049 -131689504 - AluY SINE Alu -2 309 3 2133 113 20 0 chr11 19094225 19094525 -131689028 - AluSx SINE Alu -4 308 3 1570 191 24 14 chr11 19094582 19094870 -131688683 - AluJo SINE Alu -21 291 1 1452 113 5 9 chr11 19096200 19096413 -131687140 - AluSc SINE Alu -9 300 89 1596 140 0 38 chr11 19096440 19096704 -131686849 + AluJb SINE Alu 44 297 -15 2610 41 0 0 chr11 19096797 19097091 -131686462 + AluY SINE Alu 1 294 -17 388 258 34 31 chr11 19097348 19097602 -131685951 - L1MD2 LINE L1 -295 5875 5650 2125 100 17 0 chr11 19098243 19098532 -131685021 - AluSg SINE Alu -16 294 1 713 190 0 29 chr11 19098562 19098699 -131684854 + FLAM_C SINE Alu 1 133 0 2265 98 10 3 chr11 19098704 19099000 -131684553 + AluSq SINE Alu 1 298 -15 2071 109 38 7 chr11 19099002 19099295 -131684258 + AluSx SINE Alu 1 302 -10 682 189 7 14 chr11 19100478 19100621 -131682932 + FLAM_C SINE Alu 2 143 0 930 117 95 56 chr11 19100816 19100896 -131682657 + MER30B DNA MER1_type 4 79 -111 1606 143 33 57 chr11 19100896 19101197 -131682356 + AluSg SINE Alu 2 295 -15 930 117 95 56 chr11 19101197 19101295 -131682258 + MER30B DNA MER1_type 79 189 -1 459 179 18 54 chr11 19101296 19101373 -131682180 - L1MB7 LINE L1 -57 6127 6054 1762 152 38 7 chr11 19101373 19101663 -131681890 + AluJb SINE Alu 1 299 -13 459 179 18 54 chr11 19101663 19101697 -131681856 - L1MB7 LINE L1 -130 6054 6020 31 26 0 0 chr11 19101736 19101774 -131681779 + AT_rich Low_complexity Low_complexity 1 38 0 423 245 20 0 chr11 19101878 19101980 -131681573 - L1MC4 LINE L1 -1133 6909 6806 650 92 92 76 chr11 19102167 19102182 -131681371 - FLAM_C SINE Alu -169 133 120 2390 76 0 0 chr11 19102182 19102471 -131681082 + AluY SINE Alu 1 289 -22 182 36 0 36 chr11 19102471 19102499 -131681054 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 650 92 92 76 chr11 19102499 19102613 -131680940 - FLAM_C SINE Alu -181 121 1 199 329 56 65 chr11 19103101 19103332 -131680221 - L2 LINE L2 -382 2932 2704 887 88 72 8 chr11 19103345 19103470 -131680083 + AluSq/x SINE Alu 1 133 -179 1986 84 39 42 chr11 19103482 19103768 -131679785 + AluSg SINE Alu 1 285 -25 207 263 109 58 chr11 19103926 19104082 -131679471 - L2 LINE L2 -221 3051 2888 399 237 102 60 chr11 19104560 19104775 -131678778 - MIR SINE MIR 0 262 39 2230 106 0 3 chr11 19105017 19105310 -131678243 + AluSq SINE Alu 1 292 -21 230 133 0 22 chr11 19105841 19105886 -131677667 + (TG)n Simple_repeat Simple_repeat 1 44 0 786 156 104 0 chr11 19106130 19106265 -131677288 + FRAM SINE Alu 1 146 -30 28 0 0 0 chr11 19106265 19106293 -131677260 + AT_rich Low_complexity Low_complexity 1 28 0 1712 153 0 62 chr11 19106303 19106623 -131676930 + AluJb SINE Alu 1 300 -12 2287 109 0 10 chr11 19106751 19107062 -131676491 - AluSg SINE Alu -2 308 1 556 294 86 20 chr11 19107248 19107493 -131676060 + MIR SINE MIR 1 261 -1 1943 152 0 10 chr11 19107735 19108037 -131675516 - AluJo SINE Alu -13 299 1 344 256 47 0 chr11 19108357 19108443 -131675110 + MIR SINE MIR 37 126 -136 1995 145 7 13 chr11 19108443 19108767 -131674786 - AluJb SINE Alu 0 326 5 449 214 154 0 chr11 19108821 19108938 -131674615 + MIR SINE MIR 118 252 -10 1393 161 45 127 chr11 19108990 19109368 -131674185 - MER7A DNA MER2_type 0 346 2 2287 48 11 0 chr11 19109421 19109689 -131673864 + AluY SINE Alu 1 271 -40 2144 117 7 0 chr11 19109930 19110243 -131673310 + AluSx SINE Alu 1 315 0 1618 160 45 7 chr11 19110257 19110545 -131673008 + AluJb SINE Alu 1 299 -13 2103 105 0 0 chr11 19110573 19110840 -131672713 + AluSx SINE Alu 1 267 -45 202 269 0 0 chr11 19111000 19111052 -131672501 + CT-rich Low_complexity Low_complexity 4 55 0 516 210 222 51 chr11 19111355 19111688 -131671865 - HAL1 LINE L1 -2 2505 2116 431 191 45 18 chr11 19111695 19111805 -131671748 - LTR33 LTR ERVL -6 515 403 228 261 67 42 chr11 19111934 19112053 -131671500 - LTR33 LTR ERVL -395 126 5 723 211 77 13 chr11 19112094 19112250 -131671303 + AluJb SINE Alu 137 302 -10 345 302 60 0 chr11 19112251 19112367 -131671186 - HAL1 LINE L1 -1802 705 583 376 260 148 24 chr11 19112433 19112602 -131670951 - HAL1 LINE L1 -2044 463 274 329 300 0 0 chr11 19112760 19112840 -131670713 - HAL1 LINE L1 -2427 80 1 1622 147 52 59 chr11 19113049 19113214 -131670339 - AluJo SINE Alu -8 304 139 1600 96 27 5 chr11 19113214 19113434 -131670119 - AluSg/x SINE Alu -4 308 84 2590 46 0 7 chr11 19113436 19113738 -131669815 - AluY SINE Alu -11 300 1 1622 147 52 59 chr11 19113738 19113875 -131669678 - AluJo SINE Alu -174 138 1 1119 213 9 85 chr11 19114010 19114169 -131669384 + AluJo SINE Alu 1 124 -188 2402 83 0 7 chr11 19114169 19114470 -131669083 + AluSq SINE Alu 3 301 -12 1119 213 9 85 chr11 19114470 19114638 -131668915 + AluJo SINE Alu 124 303 -9 279 169 34 0 chr11 19114692 19114751 -131668802 - AluSc SINE Alu 0 299 239 2378 76 3 0 chr11 19115050 19115340 -131668213 - AluSq SINE Alu -22 291 1 314 169 15 0 chr11 19116346 19116411 -131667142 + CT-rich Low_complexity Low_complexity 3 68 0 2133 127 6 19 chr11 19116449 19116765 -131666788 - AluSx SINE Alu 0 312 1 309 116 58 43 chr11 19116766 19116835 -131666718 - L1PA16 LINE L1 -127 6039 5970 2433 94 0 0 chr11 19116835 19117143 -131666410 - AluSc SINE Alu -1 308 1 544 241 97 26 chr11 19117222 19117450 -131666103 - MLT1K LTR MaLR 0 588 345 337 374 89 14 chr11 19117613 19117827 -131665726 - MLT1K LTR MaLR -356 232 3 2290 110 3 0 chr11 19117928 19118237 -131665316 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr11 19118755 19118777 -131664776 + AT_rich Low_complexity Low_complexity 1 22 0 1830 98 8 0 chr11 19118819 19119055 -131664498 - AluSx SINE Alu -15 297 60 2195 115 0 19 chr11 19119067 19119381 -131664172 - AluSx SINE Alu -4 308 1 24 32 0 0 chr11 19119381 19119412 -131664141 + AT_rich Low_complexity Low_complexity 1 31 0 262 75 62 62 chr11 19120042 19120122 -131663431 + CT-rich Low_complexity Low_complexity 3 82 0 180 163 0 0 chr11 19120171 19120214 -131663339 + C-rich Low_complexity Low_complexity 3 45 0 555 176 0 128 chr11 19120232 19120274 -131663279 - FAM SINE Alu -174 147 101 2189 124 0 0 chr11 19120274 19120565 -131662988 - AluSx SINE Alu -21 291 1 555 176 0 128 chr11 19120565 19120670 -131662883 - FAM SINE Alu -220 101 19 1187 179 172 23 chr11 19120785 19121047 -131662506 - AluJo SINE Alu -1 301 1 22 0 0 0 chr11 19121139 19121161 -131662392 + AT_rich Low_complexity Low_complexity 1 22 0 665 174 53 16 chr11 19121200 19121409 -131662144 + AluJo SINE Alu 36 285 -27 35 41 0 0 chr11 19121582 19121631 -131661922 + AT_rich Low_complexity Low_complexity 1 49 0 2234 96 11 0 chr11 19121804 19122106 -131661447 - AluSx SINE Alu 0 305 1 859 250 23 41 chr11 19122484 19122704 -131660849 - MER58A DNA MER1_type 0 224 9 744 254 107 27 chr11 19122890 19123189 -131660364 + L1MEd LINE L1 623 897 -5413 1944 144 3 7 chr11 19123189 19123498 -131660055 + AluSx SINE Alu 1 308 0 744 254 107 27 chr11 19123498 19123945 -131659608 + L1MEd LINE L1 897 1555 -4755 482 129 153 0 chr11 19123960 19124045 -131659508 + FLAM_A SINE Alu 43 140 -2 245 291 73 45 chr11 19124053 19124232 -131659321 + L1MEd LINE L1 1555 1738 -4572 1981 121 3 34 chr11 19124415 19124737 -131658816 - AluSx SINE Alu 0 312 1 658 174 25 16 chr11 19124850 19124971 -131658582 - AluSg/x SINE Alu -77 235 114 2444 80 0 6 chr11 19125063 19125375 -131658178 + AluY SINE Alu 2 311 0 580 200 0 0 chr11 19125465 19125560 -131657993 - FAM SINE Alu -67 118 24 2334 103 0 0 chr11 19125648 19125950 -131657603 + AluSx SINE Alu 1 302 -10 472 242 61 114 chr11 19126373 19126481 -131657072 - MIR SINE MIR -2 260 148 2182 128 0 0 chr11 19126481 19126786 -131656767 + AluSg1 SINE Alu 1 305 -4 472 242 61 114 chr11 19126786 19126941 -131656612 - MIR SINE MIR -114 148 11 2183 131 3 0 chr11 19127083 19127381 -131656172 - AluSx SINE Alu -13 299 1 965 119 0 0 chr11 19128034 19128160 -131655393 - AluSq/x SINE Alu -187 126 1 744 145 32 16 chr11 19128275 19128399 -131655154 - FLAM_C SINE Alu -16 127 2 22 0 0 0 chr11 19128400 19128422 -131655131 + AT_rich Low_complexity Low_complexity 1 22 0 2282 100 7 7 chr11 19128432 19128732 -131654821 + AluSc SINE Alu 1 300 -9 2388 98 3 0 chr11 19128744 19129049 -131654504 + AluSg SINE Alu 3 308 -2 713 263 92 24 chr11 19129065 19129400 -131654153 + L1M4 LINE L1 3805 4162 -1984 1633 181 18 7 chr11 19129420 19129696 -131653857 + AluJo SINE Alu 1 279 -33 258 32 0 0 chr11 19129697 19129728 -131653825 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr11 19131232 19131261 -131652292 + AT_rich Low_complexity Low_complexity 1 29 0 983 96 0 15 chr11 19131341 19131476 -131652077 - FLAM_C SINE Alu 0 133 1 578 132 19 19 chr11 19131672 19131778 -131651775 + AluSp/q SINE Alu 197 302 -11 270 226 196 10 chr11 19131781 19131883 -131651670 - MIR SINE MIR -111 151 31 676 108 0 20 chr11 19132213 19132315 -131651238 + FLAM_C SINE Alu 5 104 -39 2347 113 0 3 chr11 19132460 19132769 -131650784 + AluSq SINE Alu 1 308 -5 1314 137 0 25 chr11 19132769 19132966 -131650587 + AluSg/x SINE Alu 106 297 -13 327 307 10 15 chr11 19133145 19133269 -131650284 - MIR SINE MIR -85 123 3 2413 102 0 3 chr11 19133436 19133750 -131649803 + AluSq SINE Alu 1 313 0 1248 97 0 12 chr11 19134133 19134298 -131649255 - AluSg/x SINE Alu -18 292 130 1922 84 84 11 chr11 19134300 19134584 -131648969 - AluSx SINE Alu -7 305 1 399 209 11 33 chr11 19134599 19134690 -131648863 + MER106A DNA MER1_type 148 236 0 3305 98 2 15 chr11 19134718 19135175 -131648378 - MLT2A2 LTR ERVL 0 453 3 2203 77 7 0 chr11 19135275 19135547 -131648006 - AluSx SINE Alu -12 300 27 2012 125 10 10 chr11 19135676 19135973 -131647580 - AluSx SINE Alu -15 297 1 480 180 60 20 chr11 19138174 19138274 -131645279 - FLAM_C SINE Alu -29 114 11 344 90 149 0 chr11 19139434 19139501 -131644052 - L1MC2 LINE L1 -14 6330 6254 2206 153 53 29 chr11 19139520 19140060 -131643493 + MLT2A2 LTR ERVL 1 554 0 2206 168 21 21 chr11 19140067 19140495 -131643058 - L1MC3 LINE L1 -115 7670 7243 1583 164 3 75 chr11 19140615 19140764 -131642789 + AluJo SINE Alu 9 124 -188 2433 79 0 7 chr11 19140764 19141067 -131642486 + AluSq SINE Alu 1 301 -12 913 216 0 0 chr11 19141068 19141235 -131642318 + AluJo/FRAM SINE Alu 137 303 -9 1087 142 28 11 chr11 19141416 19141592 -131641961 + AluSq SINE Alu 120 298 -15 643 111 89 0 chr11 19141595 19141685 -131641868 - FLAM_A SINE Alu -26 116 19 1931 140 14 3 chr11 19141747 19142039 -131641514 + AluSx SINE Alu 3 297 -15 2069 112 14 3 chr11 19142172 19142466 -131641087 + AluSx SINE Alu 1 297 -15 1667 161 65 0 chr11 19142605 19142896 -131640657 + AluJb SINE Alu 1 310 -2 1341 116 0 6 chr11 19142940 19143121 -131640432 + AluSx SINE Alu 1 180 -132 426 194 111 21 chr11 19143126 19143270 -131640283 + L1ME3A LINE L1 4496 4652 -1494 1129 264 130 30 chr11 19143435 19144002 -131639551 + L1ME3A LINE L1 4960 5648 -522 2429 74 3 0 chr11 19144002 19144298 -131639255 + AluSg SINE Alu 1 297 -13 1129 264 130 30 chr11 19144298 19144599 -131638954 + L1ME3A LINE L1 5648 5917 -253 2289 97 23 0 chr11 19144626 19144926 -131638627 + AluSx SINE Alu 2 308 -4 732 169 0 73 chr11 19145078 19145214 -131638339 - FRAM SINE Alu -14 162 37 2094 96 48 3 chr11 19145375 19145666 -131637887 - AluSx SINE Alu -8 304 1 1939 153 3 3 chr11 19145809 19146103 -131637450 + AluSx SINE Alu 9 302 -10 2342 81 27 0 chr11 19146326 19146621 -131636932 - AluSc SINE Alu -6 303 1 584 262 0 35 chr11 19147172 19147191 -131636362 - L1MA10 LINE L1 0 6334 6316 737 277 5 5 chr11 19147191 19147375 -131636178 - L1ME1 LINE L1 -5 6161 5978 634 194 38 7 chr11 19147378 19147542 -131636011 - L1ME2 LINE L1 -226 5938 5767 1315 192 3 70 chr11 19147587 19147874 -131635679 - AluSx SINE Alu -44 268 1 904 259 1 1 chr11 19147874 19148093 -131635460 - L1M2 LINE L1 -398 5768 5575 751 163 7 20 chr11 19148094 19148364 -131635189 + AluJ SINE Alu 1 312 0 2180 126 3 16 chr11 19148388 19148705 -131634848 + AluSq SINE Alu 1 313 0 1869 123 14 21 chr11 19148745 19149062 -131634491 - AluSx SINE Alu 0 315 1 7127 150 34 12 chr11 19149064 19150316 -131633237 - L1PBa LINE L1 -2879 3983 2654 2375 107 0 0 chr11 19150316 19150625 -131632928 + AluSx SINE Alu 1 309 -3 7127 150 34 12 chr11 19150625 19151638 -131631915 - L1PBa LINE L1 -4208 2654 1665 1183 144 11 16 chr11 19151638 19151825 -131631728 - AluSx SINE Alu -126 186 1 265 276 49 25 chr11 19152138 19152301 -131631252 - L1M4 LINE L1 -3733 2413 2247 1022 181 109 23 chr11 19152397 19152429 -131631124 - L1MB7 LINE L1 0 6184 6156 2773 131 46 10 chr11 19152429 19152842 -131630711 + MSTA LTR MaLR 1 428 0 1022 181 109 23 chr11 19152842 19153075 -131630478 - L1MB7 LINE L1 -28 6156 5896 2515 76 3 0 chr11 19153694 19153998 -131629555 - AluSp SINE Alu -8 305 1 244 292 10 0 chr11 19154542 19154638 -131628915 - L1M4 LINE L1 -1088 5058 4962 2314 153 67 48 chr11 19154638 19154683 -131628870 - MSTB LTR MaLR 0 426 383 2568 65 0 0 chr11 19154683 19154990 -131628563 + AluY SINE Alu 1 307 -4 1768 156 49 3 chr11 19154995 19155283 -131628270 + AluSx SINE Alu 1 301 -11 2314 153 67 48 chr11 19155283 19155649 -131627904 - MSTB LTR MaLR -46 380 1 791 275 21 21 chr11 19156082 19156318 -131627235 + MIR SINE MIR 8 243 -19 2321 105 0 0 chr11 19156494 19156800 -131626753 + AluSq SINE Alu 1 306 -7 1956 130 3 56 chr11 19156905 19157227 -131626326 + AluSx SINE Alu 1 305 -7 2110 115 3 47 chr11 19157232 19157554 -131625999 + AluSc SINE Alu 1 308 -1 21 36 0 0 chr11 19157658 19157686 -131625867 + AT_rich Low_complexity Low_complexity 1 28 0 667 163 81 0 chr11 19157714 19157837 -131625716 + L1MB3 LINE L1 6020 6152 -31 1590 180 12 43 chr11 19157859 19158181 -131625372 + AluJo SINE Alu 1 312 0 800 237 6 6 chr11 19158184 19158357 -131625196 + AluJo/FRAM SINE Alu 129 301 -11 2011 113 0 0 chr11 19159093 19159359 -131624194 - AluSx SINE Alu -10 302 37 2005 164 0 0 chr11 19159881 19160191 -131623362 - AluSx SINE Alu 0 312 3 22 0 0 0 chr11 19161273 19161295 -131622258 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 19161405 19161426 -131622127 + AT_rich Low_complexity Low_complexity 1 21 0 2013 128 0 33 chr11 19161598 19161902 -131621651 - AluSg SINE Alu -16 294 1 1662 174 0 20 chr11 19162094 19162388 -131621165 + AluJb SINE Alu 1 288 -24 467 250 0 0 chr11 19162765 19162869 -131620684 - L2 LINE L2 -2 3311 3208 205 322 76 25 chr11 19162852 19162970 -131620583 - L2 LINE L2 -860 2454 2331 * 811 212 97 23 chr11 19162991 19163208 -131620345 - MLT1K LTR MaLR -37 551 319 276 298 129 29 chr11 19163396 19163540 -131620013 - L2 LINE L2 -1730 1584 1419 2363 88 0 7 chr11 19163540 19163836 -131619717 - AluY SINE Alu -13 298 5 276 298 129 29 chr11 19163836 19163862 -131619691 - L2 LINE L2 -1895 1419 1397 206 342 62 67 chr11 19163870 19164173 -131619380 - L2 LINE L2 -2521 793 491 2167 139 3 0 chr11 19164173 19164475 -131619078 + AluSx SINE Alu 1 303 -9 206 342 62 67 chr11 19164475 19164607 -131618946 - L2 LINE L2 -2823 491 360 24 0 0 0 chr11 19164673 19164697 -131618856 + AT_rich Low_complexity Low_complexity 1 24 0 1917 116 18 7 chr11 19164709 19164986 -131618567 - AluSx SINE Alu -32 280 1 1303 126 61 26 chr11 19165631 19165862 -131617691 + AluJo SINE Alu 74 312 0 22 0 0 0 chr11 19166482 19166504 -131617049 + AT_rich Low_complexity Low_complexity 1 22 0 331 111 0 0 chr11 19167976 19168021 -131615532 + Alu SINE Alu 246 290 -12 1533 184 54 0 chr11 19168071 19168365 -131615188 + AluJo SINE Alu 1 310 -2 2278 114 0 0 chr11 19168650 19168948 -131614605 - AluSx SINE Alu -14 298 1 1792 150 10 20 chr11 19169142 19169442 -131614111 - AluJb SINE Alu -15 297 1 482 98 18 161 chr11 19169866 19169978 -131613575 + MER106B DNA MER1_type 27 122 -937 417 86 0 0 chr11 19169984 19170042 -131613511 + (TA)n Simple_repeat Simple_repeat 1 58 0 1124 140 0 17 chr11 19170043 19170221 -131613332 - AluSg/x SINE Alu -6 304 130 1450 164 75 4 chr11 19170228 19170509 -131613044 - AluSx SINE Alu -11 301 1 429 202 20 30 chr11 19170516 19170615 -131612938 + MER106A DNA MER1_type 139 236 0 417 97 0 56 chr11 19170643 19170715 -131612838 - MLT2A2 LTR ERVL 0 453 386 2290 91 3 13 chr11 19170867 19171174 -131612379 + AluSg SINE Alu 1 304 -6 1501 164 31 72 chr11 19171177 19171495 -131612058 + AluJb SINE Alu 1 305 -7 2135 99 0 63 chr11 19171514 19171655 -131611898 + AluSx SINE Alu 1 149 -163 2491 46 0 0 chr11 19171655 19171974 -131611579 + AluY SINE Alu 1 319 0 2135 99 0 63 chr11 19171974 19172163 -131611390 + AluSx SINE Alu 149 311 -1 2800 103 78 5 chr11 19172414 19172813 -131610740 + MSTC LTR MaLR 1 428 0 238 325 111 26 chr11 19172814 19172931 -131610622 - L2 LINE L2 -3 3269 3143 214 235 160 50 chr11 19172964 19173083 -131610470 - L3 LINE CR1 -108 1469 1338 307 284 300 21 chr11 19173615 19173732 -131609821 - MIR SINE MIR -17 245 162 2377 104 0 0 chr11 19173732 19174030 -131609523 + AluSp SINE Alu 1 298 -15 307 284 300 21 chr11 19174030 19174102 -131609451 - MIR SINE MIR -100 162 3 531 217 9 35 chr11 19174265 19174426 -131609127 - FLAM_A SINE Alu 0 161 4 1754 148 36 0 chr11 19174437 19174715 -131608838 - AluSx SINE Alu -18 294 7 32 0 0 0 chr11 19174725 19174757 -131608796 + AT_rich Low_complexity Low_complexity 1 32 0 2322 107 37 11 chr11 19175115 19175470 -131608083 - L1PA16 LINE L1 -1 6165 5802 1960 146 7 3 chr11 19175669 19175970 -131607583 + AluJb SINE Alu 1 302 -10 492 271 59 52 chr11 19176135 19176423 -131607130 - L2 LINE L2 -759 2555 2266 501 111 53 213 chr11 19176798 19176875 -131606678 - L1M4 LINE L1 -1383 4763 4675 2147 112 11 0 chr11 19176875 19177162 -131606391 + AluSx SINE Alu 1 290 -22 501 111 53 213 chr11 19177162 19177180 -131606373 - L1M4 LINE L1 -1471 4675 4656 1116 133 0 0 chr11 19177180 19177360 -131606193 + (TA)n Simple_repeat Simple_repeat 1 180 0 501 111 53 213 chr11 19177360 19177470 -131606083 - L1M4 LINE L1 -1490 4656 4590 * 887 235 76 41 chr11 19177450 19177634 -131605919 - L1M4c LINE L1 -4832 1552 1349 2204 118 0 3 chr11 19177634 19177938 -131605615 - AluSx SINE Alu -9 303 1 887 235 76 41 chr11 19177938 19178094 -131605459 - L1M4c LINE L1 -5035 1349 1200 207 0 0 0 chr11 19179130 19179153 -131604400 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 2107 118 14 0 chr11 19179229 19179516 -131604037 - AluSx SINE Alu -14 298 8 2356 95 0 0 chr11 19179989 19180285 -131603268 - AluSx SINE Alu -16 296 1 1476 141 0 0 chr11 19180509 19180722 -131602831 - AluSg/x SINE Alu -13 299 87 2122 96 48 21 chr11 19180722 19181057 -131602496 - L1PBa LINE L1 -4336 2527 2184 1079 86 0 0 chr11 19181158 19181297 -131602256 - AluSp SINE Alu -174 139 1 2128 123 0 7 chr11 19181298 19181599 -131601954 - AluSq SINE Alu -10 303 5 229 324 0 0 chr11 19181638 19181712 -131601841 + (TATATG)n Simple_repeat Simple_repeat 6 79 0 1750 179 0 16 chr11 19181921 19182050 -131601503 + AluJo SINE Alu 9 139 -173 2368 75 10 0 chr11 19182050 19182343 -131601210 + AluY SINE Alu 1 296 -15 1750 179 0 16 chr11 19182343 19182520 -131601033 + AluJo SINE Alu 139 310 -2 1661 189 3 7 chr11 19182570 19182866 -131600687 + AluJo SINE Alu 1 295 -17 202 241 0 52 chr11 19182923 19182981 -131600572 - L2 LINE L2 0 3272 3218 308 221 127 44 chr11 19183556 19183714 -131599839 - Charlie7 DNA MER1_type 0 2612 2442 1862 162 7 0 chr11 19183715 19184012 -131599541 + AluJb SINE Alu 1 299 -13 2242 94 10 3 chr11 19184163 19184460 -131599093 + AluSx SINE Alu 1 299 -13 1492 174 0 4 chr11 19185280 19185516 -131598037 + AluJo SINE Alu 1 235 -77 2234 122 3 0 chr11 19185570 19185881 -131597672 + AluSx SINE Alu 1 312 0 3408 231 81 43 chr11 19185892 19186190 -131597363 - L2 LINE L2 -36 3277 2992 1639 154 18 28 chr11 19186190 19186476 -131597077 + AluJo SINE Alu 14 296 -16 3408 231 81 43 chr11 19186476 19187394 -131596159 - L2 LINE L2 -321 2992 2110 1688 178 13 16 chr11 19187394 19187703 -131595850 + AluJb SINE Alu 1 308 -4 1935 174 13 0 chr11 19187709 19188014 -131595539 + AluJb SINE Alu 1 309 -3 3408 231 81 43 chr11 19188014 19188189 -131595364 - L2 LINE L2 -1207 2106 1829 248 250 46 56 chr11 19188196 19188304 -131595249 + L1MC5 LINE L1 7200 7306 -655 1614 94 9 0 chr11 19188325 19188538 -131595015 - AluSg/x SINE Alu -12 298 84 317 265 122 10 chr11 19188800 19188912 -131594641 + MIR SINE MIR 30 154 -54 867 111 0 0 chr11 19189010 19189136 -131594417 - MER41B LTR ERV1 0 635 510 1932 147 0 3 chr11 19189151 19189444 -131594109 + AluSx SINE Alu 18 309 -3 3217 144 7 35 chr11 19189446 19189470 -131594083 - MER41B LTR ERV1 -87 548 525 2330 85 7 3 chr11 19189470 19189775 -131593778 + AluSc SINE Alu 3 308 -1 3217 144 7 35 chr11 19189775 19190297 -131593256 - MER41B LTR ERV1 -110 525 17 2379 115 0 0 chr11 19190301 19190614 -131592939 - AluSq SINE Alu 0 313 1 1240 189 18 14 chr11 19190615 19190642 -131592911 - HERVK14 LTR ERVK -157 5788 5761 3415 90 17 21 chr11 19190642 19191118 -131592435 - MER41-int LTR ERV1 0 5946 5473 1927 107 0 4 chr11 19191119 19191381 -131592172 - AluSg SINE Alu -4 306 46 1821 98 4 8 chr11 19191560 19191814 -131591739 - LTR8A LTR ERV1 -474 253 1 244 253 77 22 chr11 19191819 19191910 -131591643 - L2 LINE L2 -56 3257 3162 373 219 104 15 chr11 19192898 19193025 -131590528 - MIR SINE MIR -66 142 33 2227 121 0 0 chr11 19195943 19196241 -131587312 + AluSx SINE Alu 13 310 -2 229 384 76 20 chr11 19196928 19197178 -131586375 - L3b LINE CR1 -11 1572 1309 1447 228 156 22 chr11 19197182 19197670 -131585883 - MLT1H1 LTR MaLR 0 555 3 733 307 187 10 chr11 19197884 19198466 -131585087 - MER115 DNA AcHobo 0 693 1 515 99 44 0 chr11 19198860 19198951 -131584602 - AluSg/x SINE Alu -1 308 214 244 114 0 0 chr11 19198951 19198995 -131584558 + Alu SINE Alu 258 301 -1 2438 83 17 0 chr11 19199267 19199568 -131583985 - AluSg SINE Alu -4 306 1 1655 225 37 83 chr11 19199836 19200404 -131583149 - MLT1F LTR MaLR 0 542 1 2289 113 0 0 chr11 19201646 19201939 -131581614 + AluSx SINE Alu 1 293 -19 257 293 86 26 chr11 19202061 19202177 -131581376 + MER5B DNA MER1_type 1 123 -55 195 224 82 0 chr11 19202217 19202266 -131581287 - MER5B DNA MER1_type -124 54 2 833 167 0 0 chr11 19202269 19202401 -131581152 + FLAM_C SINE Alu 2 133 0 721 173 31 80 chr11 19204166 19204328 -131579225 - LTR8A LTR ERV1 0 727 574 1294 232 14 45 chr11 19204334 19204760 -131578793 - LTR8A LTR ERV1 -275 452 40 643 330 87 19 chr11 19204885 19205206 -131578347 + L3 LINE CR1 1231 1573 -4 254 246 31 92 chr11 19205304 19205434 -131578119 + MIR SINE MIR 18 139 -69 466 227 45 9 chr11 19205500 19205610 -131577943 - L2 LINE L2 0 3313 3200 450 303 62 6 chr11 19205770 19205932 -131577621 - MIR SINE MIR -90 172 2 326 322 119 11 chr11 19206064 19206241 -131577312 + L2 LINE L2 3025 3220 -52 552 295 60 36 chr11 19206252 19206362 -131577191 - L2 LINE L2 0 3313 3207 510 301 135 0 chr11 19206362 19206591 -131576962 + MIR SINE MIR 1 260 -2 552 295 60 36 chr11 19206591 19206731 -131576822 - L2 LINE L2 -106 3207 3057 997 298 45 62 chr11 19208139 19208475 -131575078 - MER115 DNA AcHobo -271 422 93 445 309 11 9 chr11 19209056 19209244 -131574309 - L2 LINE L2 0 3272 3026 654 275 87 10 chr11 19209823 19210030 -131573523 + MIR SINE MIR 38 260 -2 272 307 66 7 chr11 19210736 19210873 -131572680 + LTR7 LTR ERV1 304 448 -2 13616 124 11 44 chr11 19210877 19213653 -131569900 + HERVH LTR ERV1 2 2995 -4718 10701 113 30 39 chr11 19213632 19215423 -131568130 + HERVH LTR ERV1 3140 4915 -2798 * 1364 172 23 0 chr11 19215420 19215682 -131567871 + HERVH LTR ERV1 5749 6016 -1697 * 3567 114 5 11 chr11 19215675 19216235 -131567318 + HERVH LTR ERV1 7157 7713 0 1248 176 111 67 chr11 19216235 19216666 -131566887 + LTR7 LTR ERV1 1 450 0 2396 88 0 0 chr11 19216854 19217150 -131566403 + AluSx SINE Alu 1 296 -16 362 278 37 0 chr11 19217206 19217314 -131566239 + L2 LINE L2 3161 3272 0 180 403 0 0 chr11 19217411 19217483 -131566070 - L2 LINE L2 -1893 1421 1350 377 269 16 32 chr11 19217510 19217695 -131565858 + L1MC/D LINE L1 5613 5801 -441 1697 200 191 73 chr11 19217712 19217868 -131565685 - LTR41 LTR ERVL -6 767 631 2187 109 0 3 chr11 19217868 19218153 -131565400 + AluSx SINE Alu 12 295 -17 1697 200 191 73 chr11 19218153 19218682 -131564871 - LTR41 LTR ERVL -142 631 1 319 294 6 75 chr11 19218690 19218850 -131564703 + L1ME4a LINE L1 5686 5803 -439 1733 193 7 10 chr11 19218916 19219212 -131564341 - AluJo SINE Alu -17 295 1 492 308 106 75 chr11 19219362 19219470 -131564083 + L1ME4a LINE L1 5657 5760 -361 2200 119 6 3 chr11 19219470 19219782 -131563771 - AluSq SINE Alu 0 313 1 492 308 106 75 chr11 19219782 19219947 -131563606 + L1ME4a LINE L1 5760 5946 -175 2124 108 21 3 chr11 19219947 19220235 -131563318 - AluSx SINE Alu -19 293 1 492 308 106 75 chr11 19220235 19220308 -131563245 + L1ME4a LINE L1 5946 6015 -106 225 240 120 56 chr11 19220668 19220793 -131562760 + MIR3 SINE MIR 49 181 -27 193 237 0 0 chr11 19221197 19221235 -131562318 - L2 LINE L2 -2 3270 3233 227 164 91 150 chr11 19221314 19221487 -131562066 + L2 LINE L2 2870 3032 -240 649 250 38 5 chr11 19221576 19221760 -131561793 - MIR SINE MIR -31 231 42 363 360 29 0 chr11 19221808 19221947 -131561606 + L2 LINE L2 3171 3313 0 287 325 19 39 chr11 19221965 19222028 -131561525 + MIR SINE MIR 111 174 -88 189 74 0 0 chr11 19222028 19222055 -131561498 + (TA)n Simple_repeat Simple_repeat 1 27 0 2401 95 0 0 chr11 19222055 19222350 -131561203 - AluSx SINE Alu -17 295 1 287 325 19 39 chr11 19222350 19222439 -131561114 + MIR SINE MIR 172 261 -1 435 189 68 55 chr11 19222772 19222919 -131560634 + MIR3 SINE MIR 3 159 -49 2359 99 0 0 chr11 19223007 19223301 -131560252 - AluSx SINE Alu -18 294 1 317 239 135 25 chr11 19223499 19223662 -131559891 + L1ME4a LINE L1 5790 5970 -151 219 156 52 78 chr11 19223686 19223763 -131559790 + MIR SINE MIR 179 253 -9 247 204 0 0 chr11 19223874 19223923 -131559630 - L1MC4 LINE L1 -1339 6703 6655 222 233 0 0 chr11 19224599 19224642 -131558911 - L2 LINE L2 -9 3304 3262 354 165 35 24 chr11 19224661 19224746 -131558807 - L2 LINE L2 -2 3311 3226 200 326 11 56 chr11 19224913 19225002 -131558551 - MIR SINE MIR -50 212 128 292 195 171 12 chr11 19225154 19225236 -131558317 - MIR SINE MIR -121 141 47 538 232 35 0 chr11 19225857 19225999 -131557554 - MIR3 SINE MIR -3 205 59 1078 204 31 9 chr11 19226000 19226226 -131557327 - MIR SINE MIR -18 244 14 505 254 55 30 chr11 19226583 19226748 -131556805 - MIR SINE MIR -74 188 20 238 274 32 0 chr11 19227581 19227643 -131555910 + MIR SINE MIR 64 127 -135 382 285 155 0 chr11 19227643 19227800 -131555753 + MLT1G1 LTR MaLR 1 228 -367 2161 115 7 3 chr11 19227800 19228095 -131555458 + AluSq SINE Alu 3 298 -15 382 285 155 0 chr11 19228095 19228110 -131555443 + MLT1G1 LTR MaLR 228 239 -356 332 250 0 0 chr11 19228113 19228185 -131555368 + MIR SINE MIR 179 250 -12 258 239 14 42 chr11 19228716 19228787 -131554766 - MIR3 SINE MIR -29 179 111 243 281 53 44 chr11 19229137 19229251 -131554302 + MIR3 SINE MIR 73 187 -21 271 271 85 68 chr11 19229265 19229442 -131554111 + L2 LINE L2 2700 2879 -435 220 355 48 30 chr11 19231343 19231509 -131552044 + MER5B DNA MER1_type 3 171 -7 451 253 247 0 chr11 19232081 19232243 -131551310 + MIR SINE MIR 49 250 -12 213 65 0 0 chr11 19233015 19233046 -131550507 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 496 259 93 0 chr11 19239044 19239183 -131544370 + MIR3 SINE MIR 39 190 -18 183 42 0 0 chr11 19239798 19239822 -131543731 + (CA)n Simple_repeat Simple_repeat 1 24 0 314 272 25 93 chr11 19239831 19239993 -131543560 + MIR3 SINE MIR 8 158 -50 225 161 36 36 chr11 19240086 19240142 -131543411 + MIR3 SINE MIR 105 160 -48 314 256 12 12 chr11 19240144 19240230 -131543323 + MER5B DNA MER1_type 3 88 -90 492 271 41 47 chr11 19240394 19240564 -131542989 + LTR33 LTR ERVL 3 171 -350 451 204 174 35 chr11 19240628 19240685 -131542868 + LTR33 LTR ERVL 326 374 -147 2320 100 3 0 chr11 19240685 19240985 -131542568 - AluSx SINE Alu -9 303 3 451 204 174 35 chr11 19240985 19241099 -131542454 + LTR33 LTR ERVL 374 521 0 481 306 89 6 chr11 19241405 19241562 -131541991 - L2 LINE L2 0 3272 3103 2142 111 47 3 chr11 19241856 19242154 -131541399 + AluSq SINE Alu 1 311 -2 2517 83 0 0 chr11 19242503 19242803 -131540750 - AluY SINE Alu -11 300 1 835 109 101 13 chr11 19243636 19243794 -131539759 - LTR7 LTR ERV1 -232 218 1 501 151 0 0 chr11 19243951 19244037 -131539516 + CT-rich Low_complexity Low_complexity 2 87 0 1779 174 0 13 chr11 19244094 19244393 -131539160 - AluSx SINE Alu -17 295 1 2048 114 0 49 chr11 19244498 19244822 -131538731 + AluSx SINE Alu 1 308 -4 479 287 99 22 chr11 19244859 19245131 -131538422 + HAL1 LINE L1 1986 2278 -229 765 159 32 0 chr11 19245138 19245264 -131538289 + FRAM SINE Alu 26 155 -21 280 245 21 63 chr11 19245272 19245415 -131538138 + HAL1 LINE L1 2291 2427 -80 2064 125 16 38 chr11 19245474 19245793 -131537760 - AluSx SINE Alu 0 312 1 2046 71 0 84 chr11 19245794 19246104 -131537449 + MER4E LTR ERV1 483 766 0 2347 107 0 0 chr11 19246166 19246475 -131537078 + AluSc SINE Alu 1 309 0 337 239 34 11 chr11 19246480 19246568 -131536985 + ORSL DNA AcHobo 186 275 0 911 286 38 45 chr11 19246817 19247236 -131536317 + L1MC/D LINE L1 5375 5790 -2018 2194 122 3 0 chr11 19247240 19247551 -131536002 + AluSx SINE Alu 1 312 0 1691 161 21 114 chr11 19247676 19247972 -131535581 - MLT1B LTR MaLR 0 390 68 2152 133 0 13 chr11 19247972 19248280 -131535273 - AluSx SINE Alu -8 304 1 1691 161 21 114 chr11 19248280 19248306 -131535247 - MLT1B LTR MaLR -322 68 41 1790 144 50 7 chr11 19248306 19248584 -131534969 - AluSx SINE Alu -22 290 1 1691 161 21 114 chr11 19248584 19248690 -131534863 - MLT1B LTR MaLR -349 41 1 1973 114 4 0 chr11 19249281 19249545 -131534008 - AluSq SINE Alu -48 265 1 377 130 428 0 chr11 19249675 19249766 -131533787 - MER53 DNA DNA 0 189 138 1763 138 10 58 chr11 19249766 19250057 -131533496 + AluJb SINE Alu 1 277 -35 377 130 428 0 chr11 19250057 19250096 -131533457 - MER53 DNA DNA -51 138 3 268 333 145 11 chr11 19250483 19250669 -131532884 + MIR SINE MIR 50 260 -2 1085 109 63 11 chr11 19251007 19251181 -131532372 - MLT1B LTR MaLR 0 390 208 845 103 152 0 chr11 19251174 19251319 -131532234 - LTR24C LTR ERV1 -457 178 12 * 2832 7 0 0 chr11 19251372 19251672 -131531881 - AluYa5 SINE Alu -11 300 1 458 201 130 54 chr11 19251683 19251867 -131531686 - L1MB8 LINE L1 -2 6176 5979 2223 104 10 0 chr11 19254396 19254685 -131528868 + AluSq SINE Alu 5 296 -17 2038 139 3 23 chr11 19254873 19255176 -131528377 - AluSx SINE Alu -15 297 1 1616 125 79 59 chr11 19255422 19255465 -131528088 - AluSx SINE Alu -2 310 269 186 43 0 0 chr11 19255465 19255488 -131528065 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 1616 125 79 59 chr11 19255488 19255748 -131527805 - AluSx SINE Alu -43 269 1 711 104 0 19 chr11 19255990 19256096 -131527457 + AluSg/x SINE Alu 205 308 -4 385 232 89 36 chr11 19256159 19256271 -131527282 - MIR SINE MIR -131 131 14 2221 96 7 3 chr11 19256271 19256564 -131526989 - AluY SINE Alu -16 295 2 2015 155 0 16 chr11 19256629 19256946 -131526607 - AluJb SINE Alu 0 312 1 836 108 108 0 chr11 19257156 19257276 -131526277 + AluSq/x SINE Alu 1 133 -179 319 167 33 0 chr11 19257359 19257419 -131526134 - AluSp SINE Alu -108 195 134 2142 113 3 10 chr11 19257419 19257720 -131525833 - AluSg SINE Alu -11 299 1 1268 118 0 0 chr11 19257731 19257901 -131525652 - AluYa5 SINE Alu -9 302 133 2564 66 0 7 chr11 19257901 19258204 -131525349 - AluY SINE Alu -10 301 1 26874 110 33 55 chr11 19258204 19259016 -131524537 - MER41B-int LTR ERV1 -743 5203 4375 2125 126 0 0 chr11 19259016 19259322 -131524231 + AluSx SINE Alu 1 306 0 26874 110 33 55 chr11 19259322 19260057 -131523496 - MER41B-int LTR ERV1 -1571 4375 3625 2198 118 10 3 chr11 19260057 19260363 -131523190 - AluSg SINE Alu -2 308 1 2195 105 3 10 chr11 19260368 19260664 -131522889 - AluSx SINE Alu -18 294 1 26874 110 33 55 chr11 19260664 19260808 -131522745 - MER41B-int LTR ERV1 -2325 3621 3475 2413 97 0 0 chr11 19260808 19261106 -131522447 - AluSq SINE Alu -15 298 1 26874 110 33 55 chr11 19261106 19263890 -131519663 - MER41B-int LTR ERV1 -2471 3475 817 1041 120 0 115 chr11 19263891 19264091 -131519462 + AluSp SINE Alu 137 313 0 3775 130 48 38 chr11 19264091 19264809 -131518744 - MER41B-int LTR ERV1 -5119 827 1 3665 130 37 64 chr11 19264809 19265259 -131518294 - MER41B LTR ERV1 0 635 207 2217 139 0 0 chr11 19265259 19265568 -131517985 - AluSx SINE Alu -3 309 1 3665 130 37 64 chr11 19265568 19265770 -131517783 - MER41B LTR ERV1 -428 207 1 2290 94 7 0 chr11 19266388 19266674 -131516879 + AluSp SINE Alu 1 288 -25 369 0 0 0 chr11 19267249 19267290 -131516263 + (CA)n Simple_repeat Simple_repeat 2 42 0 1934 112 31 7 chr11 19267419 19267706 -131515847 + AluSx SINE Alu 1 294 -18 748 197 0 0 chr11 19267747 19267879 -131515674 - FLAM_C SINE Alu 0 133 2 3988 131 34 43 chr11 19267946 19268152 -131515401 - MER50 LTR ERV1 -51 683 477 2048 125 4 0 chr11 19268152 19268453 -131515100 - AluSx SINE Alu 0 302 1 3988 131 34 43 chr11 19268453 19268926 -131514627 - MER50 LTR ERV1 -257 477 9 713 142 0 0 chr11 19268935 19269041 -131514512 - FLAM_C SINE Alu -36 107 2 2362 81 3 3 chr11 19269064 19269361 -131514192 + AluSg SINE Alu 1 297 -13 2013 109 0 85 chr11 19269369 19269698 -131513855 + AluSx SINE Alu 1 301 -11 443 286 56 19 chr11 19270098 19270259 -131513294 + MIR SINE MIR 90 256 -6 2278 112 0 0 chr11 19270263 19270559 -131512994 + AluSc SINE Alu 1 296 -13 423 297 55 22 chr11 19270644 19270826 -131512727 + MER5A DNA MER1_type 2 189 0 2090 133 0 0 chr11 19270917 19271202 -131512351 - AluSx SINE Alu -27 285 1 2347 104 0 0 chr11 19271452 19271759 -131511794 + AluSg SINE Alu 1 307 -3 413 305 58 46 chr11 19271806 19272154 -131511399 - L2 LINE L2 -410 2904 2553 2159 99 0 54 chr11 19272303 19272617 -131510936 + AluSq SINE Alu 1 297 -16 2354 66 42 0 chr11 19272952 19273240 -131510313 + AluSx SINE Alu 1 300 -12 250 279 238 7 chr11 19273270 19273417 -131510136 - L3 LINE CR1 -601 976 796 1407 149 115 53 chr11 19273496 19273818 -131509735 + MLT1A2 LTR MaLR 1 342 -32 3607 140 37 3 chr11 19273818 19274388 -131509165 - Tigger2 DNA MER2_type 0 2718 2130 2120 114 0 10 chr11 19274388 19274523 -131509030 + AluSx SINE Alu 1 136 -186 2391 70 0 10 chr11 19274523 19274824 -131508729 + AluSc SINE Alu 1 298 -11 2120 114 0 10 chr11 19274824 19275013 -131508540 + AluSx SINE Alu 136 322 0 1560 193 60 3 chr11 19275020 19275367 -131508186 + L1ME3A LINE L1 5644 6010 -160 1277 120 8 68 chr11 19275501 19275630 -131507923 - Tigger2 DNA MER2_type -2482 236 128 2343 119 0 0 chr11 19275630 19275942 -131507611 - AluSx SINE Alu 0 312 1 1277 120 8 68 chr11 19275942 19276062 -131507491 - Tigger2 DNA MER2_type -2590 128 2 434 301 236 0 chr11 19276344 19276543 -131507010 + MIR SINE MIR 7 252 -10 306 245 115 67 chr11 19276678 19276690 -131506863 + L2 LINE L2 3096 3106 -207 1748 152 50 3 chr11 19276690 19276987 -131506566 - AluJb SINE Alu -1 311 1 306 245 115 67 chr11 19276987 19277182 -131506371 + L2 LINE L2 3106 3313 0 2102 92 3 7 chr11 19277209 19277516 -131506037 + AluY SINE Alu 1 306 0 244 246 14 0 chr11 19277516 19277585 -131505968 - MIR SINE MIR -94 114 45 1550 146 25 29 chr11 19278009 19278327 -131505226 + LTR8 LTR ERV1 256 590 -137 286 204 80 105 chr11 19278399 19278487 -131505066 - L1MC/D LINE L1 -2332 5476 5392 2205 121 0 3 chr11 19278487 19278801 -131504752 - AluSq SINE Alu 0 313 1 286 204 80 105 chr11 19278801 19278874 -131504679 - L1MC/D LINE L1 -2416 5392 5319 236 229 0 0 chr11 19279092 19279140 -131504413 + MER53 DNA DNA 1 48 -141 424 164 410 0 chr11 19279143 19279277 -131504276 + MER53 DNA DNA 1 189 0 537 196 214 32 chr11 19279490 19279600 -131503953 - MER113 DNA MER1_type? -261 260 171 2103 83 97 0 chr11 19279600 19279878 -131503675 + AluSg SINE Alu 1 305 -5 537 196 214 32 chr11 19279878 19279987 -131503566 - MER113 DNA MER1_type? -350 171 1 1935 168 96 53 chr11 19280052 19280522 -131503031 - LTR2B LTR ERV1 0 490 1 457 159 0 0 chr11 19280624 19280693 -131502860 - LTR8 LTR ERV1 0 691 623 2059 106 4 4 chr11 19280694 19280969 -131502584 + AluSg SINE Alu 1 275 -35 249 28 0 0 chr11 19280996 19281032 -131502521 + MER41A LTR ERV1 429 464 -90 625 210 0 17 chr11 19281061 19281180 -131502373 - LTR8 LTR ERV1 -54 637 521 192 97 0 0 chr11 19282740 19282771 -131500782 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 42268 60 7 2 chr11 19282773 19288863 -131494690 - L1PA5 LINE L1 -27 6127 11 3085 117 14 92 chr11 19288876 19289449 -131494104 - LTR8 LTR ERV1 -163 528 1 3814 133 46 7 chr11 19289459 19290070 -131493483 + MER41B LTR ERV1 1 635 0 1039 196 18 40 chr11 19290273 19290409 -131493144 + AluJo SINE Alu 1 133 -179 1961 142 0 4 chr11 19290409 19290717 -131492836 + AluSx SINE Alu 3 309 0 1039 196 18 40 chr11 19290717 19290804 -131492749 + AluJo SINE Alu 133 220 -92 345 49 0 0 chr11 19290804 19290845 -131492708 + AluSq/x SINE Alu 86 126 -177 274 156 23 8 chr11 19290945 19290999 -131492554 - Alu SINE Alu -257 43 1 388 213 120 47 chr11 19291010 19291160 -131492393 + L1MC5 LINE L1 7327 7487 -474 1845 137 4 11 chr11 19291232 19291510 -131492043 + AluJo SINE Alu 21 296 -16 1528 162 107 21 chr11 19291510 19291838 -131491715 + L1MB8 LINE L1 5819 6174 -4 479 161 174 7 chr11 19291865 19292014 -131491539 + L1MC5 LINE L1 7521 7694 -267 1736 119 36 46 chr11 19292436 19292738 -131490815 + AluJb SINE Alu 3 301 -11 188 295 0 16 chr11 19292745 19292806 -131490747 - MIR3 SINE MIR -4 204 145 430 233 69 31 chr11 19292857 19293016 -131490537 + MER103 DNA DNA 1 165 -1 190 237 0 0 chr11 19293074 19293112 -131490441 - MIR3 SINE MIR -49 159 122 1537 160 97 3 chr11 19293923 19294223 -131489330 - MER7A DNA MER2_type 0 346 21 1346 172 57 0 chr11 19294467 19294711 -131488842 + AluJb SINE Alu 42 299 -13 270 275 46 0 chr11 19295402 19295511 -131488042 + MIR SINE MIR 149 262 0 356 289 114 13 chr11 19295553 19295702 -131487851 - L3 LINE CR1 -88 1489 1326 223 342 92 8 chr11 19295702 19295822 -131487731 - L2 LINE L2 -20 3252 3123 21 0 0 0 chr11 19296168 19296189 -131487364 + AT_rich Low_complexity Low_complexity 1 21 0 305 337 21 0 chr11 19296758 19296853 -131486700 + L1ME LINE L1 21 117 -5953 1822 144 10 39 chr11 19296962 19297268 -131486285 - AluSq SINE Alu -16 297 1 1739 173 13 23 chr11 19297463 19297763 -131485790 + AluJo SINE Alu 3 299 -13 2074 122 7 13 chr11 19298033 19298337 -131485216 + AluSx SINE Alu 1 302 -10 198 167 0 133 chr11 19299565 19299625 -131483928 + L3b LINE CR1 1432 1483 -100 * 219 346 0 58 chr11 19299575 19299679 -131483874 - MER5A DNA MER1_type -32 157 60 274 308 154 10 chr11 19300043 19300147 -131483406 + L2 LINE L2 3148 3266 -6 821 128 0 0 chr11 19300256 19300373 -131483180 + AluJo/FLAM SINE Alu 1 117 -185 303 130 103 30 chr11 19300373 19300557 -131482996 + AluJ SINE Alu 46 287 -15 2028 136 19 23 chr11 19300568 19300877 -131482676 + AluSx SINE Alu 1 308 -4 1322 68 0 0 chr11 19301812 19301975 -131481578 + AluY SINE Alu 136 298 -13 1557 153 127 4 chr11 19302409 19302677 -131480876 - AluJb SINE Alu -11 301 1 21 0 0 0 chr11 19302713 19302734 -131480819 + AT_rich Low_complexity Low_complexity 1 21 0 2262 68 35 66 chr11 19306355 19306419 -131477134 + THE1A LTR MaLR 1 65 -290 186 43 0 0 chr11 19306419 19306442 -131477111 + (TG)n Simple_repeat Simple_repeat 2 24 0 2262 68 35 66 chr11 19306442 19306611 -131476942 + THE1A LTR MaLR 65 222 -133 2223 100 17 3 chr11 19306611 19306910 -131476643 + AluSq SINE Alu 1 303 -10 2262 68 35 66 chr11 19306910 19307041 -131476512 + THE1A LTR MaLR 222 355 0 1182 64 0 0 chr11 19308334 19308475 -131475078 - AluSg/x SINE Alu -8 302 162 21 36 0 0 chr11 19308993 19309021 -131474532 + AT_rich Low_complexity Low_complexity 1 28 0 777 201 5 22 chr11 19309200 19309384 -131474169 + LTR28 LTR ERV1 1 181 -839 299 194 15 0 chr11 19309403 19309470 -131474083 + LTR1 LTR ERV1 119 186 -599 * 1212 211 20 32 chr11 19309444 19309785 -131473768 + LTR27 LTR ERV1 300 636 0 6741 20 9 1 chr11 19309889 19310674 -131472879 + L1PA4 LINE L1 5364 6154 -1 777 161 31 0 chr11 19310934 19311064 -131472489 - AluJo SINE Alu -177 135 2 2205 85 32 0 chr11 19312243 19312525 -131471028 + AluSc SINE Alu 1 291 -18 896 205 18 6 chr11 19312627 19312798 -131470755 - FAM SINE Alu -2 173 1 1754 221 86 29 chr11 19314581 19315092 -131468461 + MER77 LTR ERV1 58 597 -8 979 76 0 0 chr11 19319219 19319338 -131464215 + AluY SINE Alu 178 296 -15 1762 123 84 0 chr11 19319581 19319910 -131463643 + AluSx SINE Alu 1 351 0 1234 193 157 0 chr11 19319950 19320199 -131463354 + AluJb SINE Alu 1 288 -24 2015 116 26 20 chr11 19320209 19320511 -131463042 + AluSx SINE Alu 2 305 -7 3326 251 151 11 chr11 19321515 19322600 -131460953 - L2 LINE L2 -386 2928 1692 451 159 16 10 chr11 19322600 19322800 -131460753 + (TA)n Simple_repeat Simple_repeat 1 201 0 2336 104 0 7 chr11 19322802 19323110 -131460443 - AluSg SINE Alu -4 306 1 5800 126 45 12 chr11 19323117 19324210 -131459343 - L1MA4A LINE L1 -4 6299 5128 2154 105 10 24 chr11 19324210 19324506 -131459047 - AluSx SINE Alu -20 292 1 5800 126 45 12 chr11 19324506 19325166 -131458387 - L1MA4A LINE L1 -1175 5128 4492 709 296 120 8 chr11 19325193 19325443 -131458110 - L2 LINE L2 -1636 1678 1401 265 171 60 162 chr11 19326507 19326624 -131456929 - L3 LINE CR1 -17 1560 1456 411 296 101 38 chr11 19326712 19326769 -131456784 - L3 LINE CR1 -314 1263 1211 2472 80 0 0 chr11 19326769 19327070 -131456483 - AluY SINE Alu -10 301 1 411 296 101 38 chr11 19327070 19327171 -131456382 - L3 LINE CR1 -366 1211 1095 252 336 251 22 chr11 19327222 19327320 -131456233 - L3 LINE CR1 -823 754 680 1869 163 13 3 chr11 19327320 19327620 -131455933 + AluJb SINE Alu 1 303 -9 252 336 251 22 chr11 19327620 19328107 -131455446 - L3 LINE CR1 -897 680 35 320 302 12 0 chr11 19328330 19328416 -131455137 - L3 LINE CR1 -70 1507 1421 1691 156 15 0 chr11 19328659 19328922 -131454631 - AluJb SINE Alu -16 296 30 2084 102 3 39 chr11 19329222 19329527 -131454026 - AluSx SINE Alu -18 294 1 2163 118 3 0 chr11 19329808 19330095 -131453458 + AluSg SINE Alu 1 288 -22 259 192 0 0 chr11 19330827 19330879 -131452674 + Alu SINE Alu 251 302 0 2160 90 21 0 chr11 19331217 19331507 -131452046 + AluSx SINE Alu 1 296 -16 1272 99 50 11 chr11 19331745 19331927 -131451626 - AluSx SINE Alu -123 189 1 23 33 0 0 chr11 19333226 19333256 -131450297 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 19333520 19333549 -131450004 + AT_rich Low_complexity Low_complexity 1 29 0 2047 162 0 0 chr11 19333575 19333877 -131449676 + AluSx SINE Alu 1 302 -10 1098 133 43 179 chr11 19334022 19334369 -131449184 + AluJb SINE Alu 1 300 -2 412 212 106 0 chr11 19334616 19334701 -131448852 - FLAM_A SINE Alu -28 114 21 1879 166 6 3 chr11 19335074 19335417 -131448136 - L1MB7 LINE L1 -21 6163 5820 1430 115 0 5 chr11 19335562 19335753 -131447800 + AluSq SINE Alu 1 190 -123 412 206 0 16 chr11 19335753 19335873 -131447680 - L1MDb LINE L1 -4769 1534 1029 2263 102 7 13 chr11 19336163 19336467 -131447086 - AluSx SINE Alu -10 302 1 958 65 41 0 chr11 19336791 19336914 -131446639 + AluSg/x SINE Alu 175 302 -8 598 101 20 0 chr11 19339339 19339438 -131444115 - AluSg/x SINE Alu -2 308 208 38 51 0 0 chr11 19339632 19339691 -131443862 + AT_rich Low_complexity Low_complexity 1 59 0 285 29 0 0 chr11 19339691 19339725 -131443828 + (TA)n Simple_repeat Simple_repeat 1 34 0 2253 105 0 3 chr11 19339825 19340119 -131443434 - AluSq SINE Alu -20 293 1 1639 172 0 8 chr11 19340131 19340399 -131443154 - AluJb SINE Alu -45 267 2 644 189 0 0 chr11 19340759 19340870 -131442683 + FLAM_A SINE Alu 16 126 -16 260 370 74 9 chr11 19341349 19341457 -131442096 + L2 LINE L2 3150 3264 -8 1254 139 0 0 chr11 19341979 19342151 -131441402 - AluJo SINE Alu -12 300 129 2495 70 0 0 chr11 19342155 19342453 -131441100 - AluY SINE Alu -13 298 1 444 237 96 22 chr11 19342647 19342782 -131440771 + MIR SINE MIR 118 262 0 1950 102 48 110 chr11 19344331 19344488 -131439065 - L1MA4 LINE L1 -33 6267 6102 978 144 0 0 chr11 19344488 19344620 -131438933 - AluJo SINE Alu -169 133 2 1950 102 48 110 chr11 19344620 19344862 -131438691 - L1MA4 LINE L1 -198 6102 5893 242 118 0 0 chr11 19344950 19344984 -131438569 - L1MA4 LINE L1 -377 5926 5893 1670 108 170 4 chr11 19345121 19345380 -131438173 - AluSx SINE Alu 0 302 1 898 186 90 16 chr11 19345391 19345579 -131437974 - AluJb SINE Alu -26 286 85 869 267 200 14 chr11 19346052 19346543 -131437010 + L1MC4a LINE L1 5329 5910 -1898 648 140 21 0 chr11 19346585 19346678 -131436875 - FLAM_A SINE Alu -14 128 34 305 239 77 54 chr11 19346702 19346832 -131436721 + L1ME4a LINE L1 5986 6118 -3 2025 107 4 0 chr11 19347283 19347555 -131435998 + AluSc SINE Alu 1 273 -36 2143 106 3 20 chr11 19348324 19348626 -131434927 - AluSg SINE Alu -12 298 2 2164 118 16 0 chr11 19348753 19349058 -131434495 - AluSq SINE Alu -3 310 1 1992 137 0 0 chr11 19349081 19349385 -131434168 - AluSx SINE Alu 0 309 6 1551 122 33 116 chr11 19349705 19350040 -131433513 - AluYb8 SINE Alu -11 307 1 489 352 116 0 chr11 19350291 19350545 -131433008 - L2 LINE L2 -201 3071 2785 358 257 0 0 chr11 19350719 19350793 -131432760 - MIR SINE MIR 0 262 189 612 255 84 11 chr11 19350793 19351024 -131432529 + MIR SINE MIR 8 262 0 218 339 54 39 chr11 19351497 19351627 -131431926 + L2 LINE L2 3141 3272 0 318 198 223 8 chr11 19351905 19352026 -131431527 + L1MC4a LINE L1 5757 5903 -1905 243 305 156 7 chr11 19352501 19352655 -131430898 + MIR3 SINE MIR 9 185 -23 21 71 0 0 chr11 19353258 19353300 -131430253 + AT_rich Low_complexity Low_complexity 1 42 0 2360 103 0 3 chr11 19353554 19353864 -131429689 - AluSc SINE Alu 0 309 1 1821 152 17 3 chr11 19354989 19355278 -131428275 - AluJo SINE Alu -19 293 1 22 35 0 0 chr11 19355535 19355564 -131427989 + AT_rich Low_complexity Low_complexity 1 29 0 231 167 0 0 chr11 19355586 19355628 -131427925 + (TA)n Simple_repeat Simple_repeat 1 42 0 289 168 32 84 chr11 19355630 19355725 -131427828 - L1MC4 LINE L1 -1339 6703 6614 2433 71 0 3 chr11 19355748 19356044 -131427509 - AluSc SINE Alu -14 295 1 2187 109 0 0 chr11 19356110 19356418 -131427135 - AluSx SINE Alu 0 308 1 2046 126 13 3 chr11 19357161 19357470 -131426083 - AluSx SINE Alu 0 312 1 1934 128 14 7 chr11 19357917 19358206 -131425347 + AluSx SINE Alu 1 291 -21 22 70 0 0 chr11 19358292 19358335 -131425218 + AT_rich Low_complexity Low_complexity 1 43 0 650 144 0 48 chr11 19358598 19358702 -131424851 - FLAM_A SINE Alu -18 124 26 2321 93 3 3 chr11 19359100 19359400 -131424153 - AluSp SINE Alu -13 300 1 180 200 22 22 chr11 19359468 19359513 -131424040 + L3 LINE CR1 361 405 -1172 763 238 126 10 chr11 19359666 19359872 -131423681 - MIR SINE MIR -30 232 3 230 282 84 0 chr11 19359872 19359942 -131423611 - MIR3 SINE MIR -40 168 93 2286 106 0 7 chr11 19360088 19360391 -131423162 - AluSx SINE Alu -11 301 1 2330 99 0 6 chr11 19360481 19360794 -131422759 - AluSq SINE Alu -2 311 1 749 208 0 0 chr11 19360834 19360959 -131422594 - FLAM_A SINE Alu -8 125 1 218 376 0 35 chr11 19361128 19361213 -131422340 + L2 LINE L2 3154 3235 -37 269 256 169 50 chr11 19361473 19361633 -131421920 + MER5A DNA MER1_type 1 179 -10 2203 106 14 0 chr11 19361819 19362112 -131421441 + AluSg SINE Alu 1 297 -13 343 294 43 0 chr11 19362147 19362239 -131421314 - L2 LINE L2 -8 3264 3169 198 373 13 0 chr11 19362248 19362323 -131421230 + MIR SINE MIR 1 76 -186 2135 108 6 19 chr11 19362935 19363249 -131420304 + AluSx SINE Alu 1 310 -2 2039 131 17 0 chr11 19363252 19363543 -131420010 + AluSx SINE Alu 1 296 -16 2389 86 0 7 chr11 19363546 19363849 -131419704 + AluSc SINE Alu 1 301 -8 1244 134 0 0 chr11 19363849 19364028 -131419525 + AluSg/x SINE Alu 134 312 0 2676 163 92 0 chr11 19364134 19364657 -131418896 + L1MB5 LINE L1 5587 6157 -17 248 29 0 0 chr11 19364766 19364801 -131418752 - Alu SINE Alu -7 296 262 2447 71 3 3 chr11 19364912 19365223 -131418330 - AluY SINE Alu 0 311 1 31 26 0 0 chr11 19365251 19365289 -131418264 + AT_rich Low_complexity Low_complexity 1 38 0 1202 160 0 0 chr11 19365324 19365499 -131418054 - FAM SINE Alu 0 175 1 429 260 93 27 chr11 19365546 19365696 -131417857 - MIR SINE MIR -98 164 5 517 256 0 16 chr11 19365829 19365950 -131417603 + MIR3 SINE MIR 82 200 -8 1245 122 35 0 chr11 19366279 19366451 -131417102 + AluSx SINE Alu 1 178 -134 2041 132 3 3 chr11 19366625 19366914 -131416639 - AluSq SINE Alu -22 291 3 2251 125 0 0 chr11 19366929 19367241 -131416312 - AluSx SINE Alu 0 312 1 701 167 30 38 chr11 19367717 19367833 -131415720 + FLAM_C SINE Alu 1 117 -185 441 0 0 0 chr11 19367833 19367882 -131415671 + (CA)n Simple_repeat Simple_repeat 2 50 0 701 167 30 38 chr11 19367882 19367897 -131415656 + FLAM_C SINE Alu 117 131 -171 334 248 165 15 chr11 19368054 19368187 -131415366 + L1MC/D LINE L1 5407 5559 -2249 471 250 146 28 chr11 19368429 19368471 -131415082 - MER5A DNA MER1_type -18 171 135 1988 133 7 0 chr11 19368471 19368764 -131414789 + AluSx SINE Alu 1 295 -17 471 250 146 28 chr11 19368764 19368865 -131414688 - MER5A DNA MER1_type -54 135 11 618 285 35 12 chr11 19368879 19369051 -131414502 + MIR SINE MIR 21 196 -66 1605 140 4 20 chr11 19369054 19369304 -131414249 + AluSx SINE Alu 1 246 -66 2161 93 38 3 chr11 19369304 19369593 -131413960 + AluSx SINE Alu 1 300 -12 487 83 0 0 chr11 19369595 19369655 -131413898 + AluSx SINE Alu 236 295 -17 227 273 0 0 chr11 19369657 19369712 -131413841 + MIR SINE MIR 202 256 -6 1703 135 23 63 chr11 19369837 19370011 -131413542 - AluJb SINE Alu -21 291 133 2263 103 0 0 chr11 19370011 19370303 -131413250 + AluSx SINE Alu 9 300 -12 1703 135 23 63 chr11 19370303 19370431 -131413122 - AluJb SINE Alu -179 133 1 1600 201 7 0 chr11 19370509 19370807 -131412746 + AluJo SINE Alu 1 300 -12 1765 163 3 3 chr11 19371052 19371346 -131412207 + AluJb SINE Alu 1 294 -18 2315 113 0 0 chr11 19371466 19371768 -131411785 + AluSx SINE Alu 1 302 -10 1844 141 38 0 chr11 19373290 19373580 -131409973 + AluSx SINE Alu 1 301 -11 2316 110 0 0 chr11 19373810 19374118 -131409435 - AluSx SINE Alu -4 308 1 719 207 8 0 chr11 19374463 19374584 -131408969 + FRAM SINE Alu 45 166 -10 1177 164 141 11 chr11 19374841 19375110 -131408443 - L1MC4 LINE L1 0 8042 7739 337 309 65 0 chr11 19375132 19375255 -131408298 + MIR SINE MIR 76 206 -56 292 198 0 172 chr11 19375385 19375501 -131408052 - Charlie8 DNA MER1_type -3 2414 232 195 129 0 0 chr11 19375526 19375557 -131407996 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 234 245 19 0 chr11 19375626 19375679 -131407874 + MIR3 SINE MIR 151 204 -4 1497 183 11 11 chr11 19375786 19376071 -131407482 + AluJo SINE Alu 5 289 -23 2343 89 0 0 chr11 19376820 19377112 -131406441 - AluY SINE Alu -19 292 1 706 264 114 62 chr11 19377229 19377634 -131405919 + L1ME4a LINE L1 5479 5904 -217 476 245 6 37 chr11 19377618 19377781 -131405772 + L1ME3A LINE L1 5793 5950 -220 * 1828 184 3 0 chr11 19378383 19378693 -131404860 + AluJb SINE Alu 1 311 -1 2003 127 27 3 chr11 19378989 19379288 -131404265 + AluSx SINE Alu 1 306 -6 1169 191 126 9 chr11 19379641 19379871 -131403682 + AluJo SINE Alu 39 295 -17 2422 83 0 0 chr11 19379875 19380177 -131403376 + AluY SINE Alu 3 304 -7 2336 94 3 0 chr11 19380441 19380739 -131402814 + AluSp SINE Alu 1 299 -14 494 217 46 66 chr11 19380750 19380902 -131402651 - MIR SINE MIR 0 262 114 251 129 81 48 chr11 19381279 19381341 -131402212 + CT-rich Low_complexity Low_complexity 2 65 0 2165 109 14 0 chr11 19382071 19382355 -131401198 - AluSx SINE Alu -23 289 2 253 286 129 2 chr11 19382670 19382778 -131400775 + MIR SINE MIR 50 171 -62 197 246 33 0 chr11 19382826 19382887 -131400666 + L2 LINE L2 3162 3224 -48 457 301 60 18 chr11 19383539 19383705 -131399848 + MIR SINE MIR 20 192 -70 1021 114 13 13 chr11 19383767 19383925 -131399628 + HUERS-P1 LTR ERV1 6106 6263 0 3997 106 3 44 chr11 19383925 19384189 -131399364 + LTR8 LTR ERV1 1 274 -417 1813 116 98 11 chr11 19384189 19384488 -131399065 + AluSx SINE Alu 1 312 0 3997 106 3 44 chr11 19384488 19384819 -131398734 + LTR8 LTR ERV1 274 617 -74 2034 121 0 3 chr11 19384819 19385101 -131398452 + AluSx SINE Alu 1 281 -31 192 40 0 0 chr11 19385101 19385126 -131398427 + (CCAA)n Simple_repeat Simple_repeat 1 25 0 3997 106 3 44 chr11 19385126 19385140 -131398413 + LTR8 LTR ERV1 574 587 -104 221 75 25 0 chr11 19385141 19385181 -131398372 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 266 171 0 0 chr11 19385463 19385504 -131398049 + MLT1A1 LTR MaLR 113 153 -212 2435 85 0 7 chr11 19385506 19385813 -131397740 + AluSx SINE Alu 1 305 -7 2116 161 34 131 chr11 19385915 19386474 -131397079 + MLT1D LTR MaLR 1 505 0 2321 82 0 3 chr11 19386793 19387085 -131396468 - AluSg SINE Alu -19 291 1 380 277 71 71 chr11 19387092 19387330 -131396223 - MIR SINE MIR -10 252 15 265 261 81 27 chr11 19387569 19387680 -131395873 + MIR SINE MIR 75 191 -71 1448 188 57 48 chr11 19387707 19388079 -131395474 + L1MB7 LINE L1 4351 4725 -1421 2325 157 32 39 chr11 19388092 19388524 -131395029 + L1MB7 LINE L1 5466 5894 -284 295 139 0 0 chr11 19388525 19388568 -131394985 + MER49 LTR ERV1 789 831 -92 529 229 20 33 chr11 19388592 19388745 -131394808 + L1MB7 LINE L1 5874 6024 -160 2226 91 14 0 chr11 19388799 19389095 -131394458 + AluSq SINE Alu 2 301 -12 2096 118 20 0 chr11 19389316 19389612 -131393941 + AluSx SINE Alu 1 302 -10 531 88 0 0 chr11 19390322 19390390 -131393163 - AluJb SINE Alu -10 302 235 1012 143 6 12 chr11 19390390 19390551 -131393002 - AluJb SINE Alu -152 160 1 2184 124 0 3 chr11 19390842 19391140 -131392413 - AluSx SINE Alu -15 297 1 2299 91 14 0 chr11 19391140 19391435 -131392118 - AluSq SINE Alu -13 300 1 2304 98 3 0 chr11 19391574 19391869 -131391684 - AluSp SINE Alu -9 304 9 188 302 129 35 chr11 19391869 19391977 -131391576 - MIR SINE MIR -109 153 32 1681 158 7 30 chr11 19392013 19392316 -131391237 + AluJo SINE Alu 1 296 -16 568 232 9 0 chr11 19392373 19392485 -131391068 + MER3 DNA MER1_type 1 113 -96 755 270 150 50 chr11 19392505 19392544 -131391009 - L1M4 LINE L1 -798 5348 5314 2174 122 0 0 chr11 19392544 19392847 -131390706 - AluSg SINE Alu -7 303 1 755 270 150 50 chr11 19392847 19392972 -131390581 - L1M4 LINE L1 -832 5314 5203 781 172 0 60 chr11 19392972 19393106 -131390447 - FLAM_C SINE Alu -6 127 2 755 270 150 50 chr11 19393106 19393543 -131390010 - L1M4 LINE L1 -943 5203 4640 2121 123 13 3 chr11 19393543 19393851 -131389702 - AluSx SINE Alu -1 311 1 755 270 150 50 chr11 19393851 19394065 -131389488 - L1M4 LINE L1 -1506 4640 4449 2197 110 0 7 chr11 19394132 19394433 -131389120 - AluSx SINE Alu -13 299 1 827 160 0 2 chr11 19394449 19394605 -131388948 - FRAM SINE Alu -24 152 20 1531 96 0 14 chr11 19394747 19394956 -131388597 + AluSg/x SINE Alu 83 288 -22 180 172 0 0 chr11 19394979 19395008 -131388545 - L2 LINE L2 -35 3237 3209 2140 98 10 3 chr11 19395437 19395744 -131387809 + AluSx SINE Alu 1 309 -3 214 302 123 28 chr11 19395953 19396059 -131387494 - L2 LINE L2 -2 3270 3155 910 235 128 77 chr11 19397515 19397942 -131385611 - L2 LINE L2 -3 3310 2906 690 235 33 6 chr11 19397942 19398125 -131385428 + MER5A DNA MER1_type 2 189 0 910 235 128 77 chr11 19398125 19398159 -131385394 - L2 LINE L2 -407 2906 2875 2429 222 59 19 chr11 19398159 19398749 -131384804 - MER90 LTR ERV1 0 614 1 910 235 128 77 chr11 19398749 19398904 -131384649 - L2 LINE L2 -438 2875 2624 407 305 8 0 chr11 19399196 19399324 -131384229 - MIR SINE MIR -16 246 118 235 215 62 15 chr11 19399477 19399542 -131384011 - MIR SINE MIR -97 165 98 1827 141 10 3 chr11 19399649 19399940 -131383613 + AluSx SINE Alu 1 293 -19 225 343 60 0 chr11 19400242 19400309 -131383244 + L2 LINE L2 3154 3224 -48 1544 181 32 0 chr11 19400485 19400767 -131382786 + AluJb SINE Alu 1 291 -21 276 208 104 0 chr11 19400929 19401006 -131382547 + L1ME LINE L1 5615 5699 -422 2172 117 0 0 chr11 19401268 19401566 -131381987 - AluSx SINE Alu -14 298 1 1845 132 3 3 chr11 19401729 19402046 -131381507 - AluSx SINE Alu 0 317 1 2214 114 3 0 chr11 19402102 19402408 -131381145 - AluSx SINE Alu -5 307 1 2137 99 0 16 chr11 19402564 19402867 -131380686 - AluSx SINE Alu -14 298 1 739 239 39 11 chr11 19404551 19404731 -131378822 + LTR41 LTR ERVL 1 185 -588 795 217 54 89 chr11 19404862 19405175 -131378378 + LTR41 LTR ERVL 460 761 -12 1790 157 7 3 chr11 19405249 19405542 -131378011 + AluJo SINE Alu 1 294 -18 1757 277 76 34 chr11 19405547 19406044 -131377509 + L1MEc LINE L1 37 512 -5884 2360 84 3 0 chr11 19406044 19406352 -131377201 + AluSp SINE Alu 2 310 -3 1757 277 76 34 chr11 19406352 19406633 -131376920 + L1MEc LINE L1 512 852 -5544 2354 71 0 0 chr11 19406633 19406928 -131376625 + AluSx SINE Alu 1 295 -17 1757 277 76 34 chr11 19406928 19406952 -131376601 + L1MEc LINE L1 852 874 -5522 222 304 129 29 chr11 19406976 19407147 -131376406 - L2 LINE L2 -1398 1916 1729 427 265 47 65 chr11 19407415 19407585 -131375968 + MIR SINE MIR 12 178 -84 2252 100 3 0 chr11 19408106 19408417 -131375136 - AluSp SINE Alu -1 312 1 2438 68 0 0 chr11 19408427 19408734 -131374819 - AluY SINE Alu -4 307 1 1266 175 160 11 chr11 19409361 19409624 -131373929 - AluJb SINE Alu 0 302 1 421 263 122 68 chr11 19409665 19409870 -131373683 + MIR SINE MIR 33 248 -14 222 271 0 57 chr11 19410348 19410418 -131373135 + MIR SINE MIR 79 144 -118 2498 49 0 0 chr11 19411832 19412138 -131371415 - AluY SINE Alu -4 307 2 1522 117 121 18 chr11 19412505 19412778 -131370775 + AluSx SINE Alu 2 302 -10 302 305 106 21 chr11 19412851 19412992 -131370561 - MIR SINE MIR -76 186 34 2233 104 10 0 chr11 19413091 19413399 -131370154 + AluSx SINE Alu 1 311 -1 1820 123 54 0 chr11 19413832 19414108 -131369445 - AluSx SINE Alu -21 291 1 2141 88 0 7 chr11 19414996 19415293 -131368260 - AluSx SINE Alu -17 295 1 2155 102 0 13 chr11 19418510 19418825 -131364728 + AluSx SINE Alu 1 311 -1 466 294 113 41 chr11 19419024 19419143 -131364410 - MIR SINE MIR -8 254 145 1263 174 108 59 chr11 19419143 19419431 -131364122 + AluJo SINE Alu 1 302 0 466 294 113 41 chr11 19419431 19419532 -131364021 - MIR SINE MIR -117 145 18 213 250 172 43 chr11 19420021 19420137 -131363416 - MIR SINE MIR -56 206 76 2208 76 23 3 chr11 19420888 19421191 -131362362 - AluSp SINE Alu -4 309 1 970 162 131 5 chr11 19421566 19421757 -131361796 - MER20 DNA MER1_type -4 215 1 281 220 0 0 chr11 19421993 19422043 -131361510 + L2 LINE L2 3258 3307 -6 1240 199 153 0 chr11 19422271 19422532 -131361021 + AluJb SINE Alu 2 302 0 270 0 0 0 chr11 19424861 19424891 -131358662 + (CA)n Simple_repeat Simple_repeat 2 31 0 2178 108 0 3 chr11 19425473 19425779 -131357774 + AluSg SINE Alu 1 305 -5 2048 113 0 0 chr11 19425788 19426072 -131357481 + AluSx SINE Alu 1 284 -28 207 0 0 0 chr11 19426084 19426107 -131357446 + (TAAG)n Simple_repeat Simple_repeat 1 23 0 205 268 0 0 chr11 19427178 19427219 -131356334 + polypurine Low_complexity Low_complexity 3 43 0 857 110 7 29 chr11 19427465 19427601 -131355952 + FLAM_C SINE Alu 1 133 0 2081 121 0 0 chr11 19427605 19427903 -131355650 + AluSc SINE Alu 1 298 -11 384 229 0 0 chr11 19428215 19428298 -131355255 + MER113 DNA MER1_type? 1 83 -438 2032 115 0 13 chr11 19428321 19428626 -131354927 + AluSx SINE Alu 1 301 -11 2359 67 0 3 chr11 19428733 19429031 -131354522 + AluY SINE Alu 1 297 -14 25 0 0 0 chr11 19429034 19429059 -131354494 + AT_rich Low_complexity Low_complexity 1 25 0 1827 79 36 4 chr11 19429150 19429402 -131354151 + AluSq SINE Alu 1 260 -53 255 195 0 0 chr11 19429404 19429507 -131354046 + AluSq SINE Alu 243 345 0 1847 173 0 0 chr11 19429933 19430245 -131353308 + AluJo SINE Alu 1 312 0 1751 156 14 3 chr11 19430376 19430665 -131352888 + AluJo SINE Alu 1 292 -20 339 162 0 0 chr11 19430668 19430736 -131352817 - L1MB8 LINE L1 -16 6162 6095 594 217 62 62 chr11 19430736 19430798 -131352755 - Tigger2 DNA MER2_type 0 2708 2647 2053 102 3 3 chr11 19430798 19431123 -131352430 + AluSq SINE Alu 1 325 0 594 217 62 62 chr11 19431123 19431220 -131352333 - Tigger2 DNA MER2_type -60 2648 2548 * 841 155 119 10 chr11 19431189 19431383 -131352170 - Tigger2 DNA MER2_type -2503 215 1 928 185 36 15 chr11 19431384 19431579 -131351974 - L1MB7 LINE L1 -87 6097 5899 1933 145 123 14 chr11 19431579 19431937 -131351616 + MLT2C1 LTR ERVL 1 397 0 1519 112 48 8 chr11 19431937 19432187 -131351366 - L1MB7 LINE L1 -281 5903 5644 2095 95 7 3 chr11 19432845 19433140 -131350413 + AluSp SINE Alu 1 296 -17 249 269 186 48 chr11 19433502 19433669 -131349884 - MIR3 SINE MIR -2 206 17 1018 152 0 101 chr11 19433680 19433917 -131349636 - AluJo SINE Alu -17 295 83 2098 102 3 16 chr11 19433939 19434243 -131349310 - AluSg SINE Alu -10 300 1 932 173 150 23 chr11 19434686 19434906 -131348647 + MIR SINE MIR 15 262 0 869 178 31 130 chr11 19435173 19435255 -131348298 + LTR24B LTR ERV1 194 283 -293 1866 126 3 58 chr11 19435255 19435580 -131347973 + AluSx SINE Alu 1 307 -5 1941 124 0 17 chr11 19435587 19435721 -131347832 + AluSx SINE Alu 3 138 -174 2217 83 3 3 chr11 19435721 19436022 -131347531 + AluY SINE Alu 1 301 -10 1941 124 0 17 chr11 19436022 19436186 -131347367 + AluSx SINE Alu 138 296 -16 869 178 31 130 chr11 19436186 19436388 -131347165 + LTR24B LTR ERV1 289 457 -119 597 95 0 0 chr11 19436391 19436475 -131347078 - L1M4 LINE L1 -451 5727 5644 427 176 88 11 chr11 19436763 19436854 -131346699 + LTR24 LTR ERV1 370 467 0 294 242 30 0 chr11 19437026 19437092 -131346461 + Charlie8 DNA MER1_type 2342 2409 -8 2047 99 3 10 chr11 19437343 19437637 -131345916 + AluSx SINE Alu 1 292 -20 2190 107 0 0 chr11 19438014 19438314 -131345239 + AluSc SINE Alu 2 301 -8 2197 92 3 0 chr11 19438319 19438613 -131344940 + AluSc SINE Alu 1 295 -14 821 129 0 102 chr11 19438932 19439118 -131344435 - AluSg/x SINE Alu 0 312 146 262 345 0 40 chr11 19439187 19439364 -131344189 + CT-rich Low_complexity Low_complexity 1 170 0 580 170 57 0 chr11 19442230 19442336 -131341217 + MER103 DNA DNA 55 166 0 1446 124 9 0 chr11 19442339 19442564 -131340989 - L1PA16 LINE L1 0 6166 5940 442 315 0 8 chr11 19442694 19442824 -131340729 + MIR SINE MIR 18 146 -62 482 179 120 34 chr11 19443759 19443876 -131339677 + MIR SINE MIR 88 214 -48 2231 87 7 0 chr11 19445231 19445531 -131338022 - AluSq SINE Alu -9 304 3 254 316 26 0 chr11 19445783 19445859 -131337694 - L2 LINE L2 -181 3091 3014 195 217 22 0 chr11 19445984 19446030 -131337523 - L2 LINE L2 -1 3312 3266 282 317 0 24 chr11 19446044 19446126 -131337427 - MIR SINE MIR 0 262 183 427 265 76 8 chr11 19446668 19446800 -131336753 - MIR SINE MIR -121 141 1 345 307 33 26 chr11 19446855 19447008 -131336545 + L3 LINE CR1 1410 1563 -14 310 307 197 0 chr11 19447668 19447805 -131335748 - L2 LINE L2 -2 3270 3107 223 299 13 39 chr11 19447852 19447929 -131335624 + L2 LINE L2 3225 3299 -14 782 129 0 24 chr11 19447940 19448064 -131335489 - FLAM_C SINE Alu -20 123 3 368 312 76 57 chr11 19448260 19448436 -131335117 + L2 LINE L2 2597 2781 -533 1427 96 200 20 chr11 19448436 19448686 -131334867 - AluSg1 SINE Alu -14 295 1 368 312 76 57 chr11 19448686 19448772 -131334781 + L2 LINE L2 2781 2864 -450 510 285 93 28 chr11 19449115 19449329 -131334224 - MIR SINE MIR -33 229 2 194 298 35 0 chr11 19449366 19449423 -131334130 - MIR3 SINE MIR -49 159 101 1306 159 14 67 chr11 19449586 19449869 -131333684 + AluJo SINE Alu 1 268 -44 382 294 34 45 chr11 19450031 19450208 -131333345 - MIR SINE MIR -21 241 67 340 341 81 6 chr11 19451053 19451226 -131332327 - MIR SINE MIR -75 187 2 226 286 227 0 chr11 19451287 19451406 -131332147 - MIR SINE MIR -77 185 40 268 141 50 40 chr11 19452892 19452991 -131330562 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 325 256 67 0 chr11 19453006 19453096 -131330457 - L1MC4 LINE L1 -1333 6709 6614 * 359 178 82 14 chr11 19453026 19453099 -131330454 + L1MC4 LINE L1 6613 6690 -1352 279 389 25 6 chr11 19453099 19453261 -131330292 - L2 LINE L2 -189 3083 2919 228 313 17 61 chr11 19453425 19453472 -131330081 - L2 LINE L2 -527 2787 2739 1770 150 144 6 chr11 19453472 19453792 -131329761 - MLT1A1 LTR MaLR 0 365 2 228 313 17 61 chr11 19453792 19453859 -131329694 - L2 LINE L2 -575 2739 2678 2054 80 18 4 chr11 19457016 19457315 -131326238 + AluSg SINE Alu 1 303 0 250 233 67 0 chr11 19458391 19458451 -131325102 + MIR SINE MIR 82 145 -63 2213 99 0 3 chr11 19458472 19458774 -131324779 + AluSg SINE Alu 1 301 -9 1615 138 0 0 chr11 19458784 19459023 -131324530 + AluSx SINE Alu 1 239 -73 391 259 32 69 chr11 19459054 19459243 -131324310 + L1MC4a LINE L1 5789 5970 -1838 241 286 107 0 chr11 19459522 19459606 -131323947 - L3b LINE CR1 -150 1433 1341 329 217 181 108 chr11 19460894 19461060 -131322493 + MER5B DNA MER1_type 1 178 0 955 256 152 0 chr11 19461061 19461338 -131322215 - MER102b DNA MER1_type -21 320 2 373 307 0 24 chr11 19461381 19461508 -131322045 + MIR SINE MIR 124 247 -15 185 156 0 0 chr11 19463437 19463469 -131320084 - L2 LINE L2 -2 3270 3239 280 295 95 19 chr11 19463494 19463599 -131319954 + L2 LINE L2 3155 3267 -5 228 333 65 0 chr11 19463605 19463713 -131319840 - L2 LINE L2 -41 3231 3117 446 204 83 89 chr11 19464696 19464743 -131318810 + MIR SINE MIR 24 70 -192 2077 98 0 71 chr11 19464743 19465068 -131318485 + AluSx SINE Alu 1 302 -10 446 204 83 89 chr11 19465068 19465177 -131318376 + MIR SINE MIR 70 179 -83 373 323 15 8 chr11 19465729 19465859 -131317694 + MIR3 SINE MIR 46 176 -32 799 195 95 59 chr11 19466481 19466513 -131317040 + MIR SINE MIR 4 33 -229 1456 168 120 18 chr11 19466513 19466787 -131316766 + AluJb SINE Alu 1 302 0 799 195 95 59 chr11 19466787 19466975 -131316578 + MIR SINE MIR 33 232 -30 184 356 153 17 chr11 19467548 19467666 -131315887 - L2 LINE L2 -6 3266 3133 216 320 29 29 chr11 19468104 19468207 -131315346 - L2 LINE L2 -285 2987 2885 * 405 230 14 72 chr11 19468188 19468327 -131315226 - MIR3 SINE MIR -20 188 58 5151 226 5 11 chr11 19568476 19569813 -131213740 - L1 LINE L1 -1909 4237 2909 222 300 29 0 chr11 19570049 19570119 -131213434 + L2 LINE L2 3242 3313 0 264 366 22 0 chr11 19570740 19570874 -131212679 - MIR SINE MIR -63 199 63 246 341 12 0 chr11 19571466 19571551 -131212002 - MIR3 SINE MIR -38 170 85 3549 93 17 0 chr11 19571831 19572417 -131211136 + L1PB1 LINE L1 5197 5791 -360 344 132 29 0 chr11 19572422 19572490 -131211063 + (TATATG)n Simple_repeat Simple_repeat 5 74 0 2718 83 3 0 chr11 19572505 19572867 -131210686 + L1PB1 LINE L1 5787 6149 -2 660 297 56 43 chr11 19573942 19574222 -131209331 - LTR33 LTR ERVL -21 500 210 2449 138 31 14 chr11 19574222 19574643 -131208910 + MSTA LTR MaLR 1 428 0 660 297 56 43 chr11 19574643 19574826 -131208727 - LTR33 LTR ERVL -311 210 31 919 284 9 24 chr11 19575111 19575449 -131208104 - MER2 DNA MER2_type 0 345 13 291 312 80 16 chr11 19577098 19577223 -131206330 - MIR SINE MIR -109 153 21 240 316 26 0 chr11 19577528 19577604 -131205949 + L2 LINE L2 3236 3313 0 369 299 108 6 chr11 19578225 19578382 -131205171 - MIR SINE MIR -75 187 15 246 296 25 25 chr11 19578871 19578952 -131204601 + L2 LINE L2 3179 3259 -54 239 311 48 19 chr11 19578960 19579068 -131204485 - MIR3 SINE MIR -37 171 58 391 289 32 32 chr11 19579262 19579449 -131204104 + MLT1J LTR MaLR 94 280 -231 1630 194 6 23 chr11 19579554 19579904 -131203649 + MER2 DNA MER2_type 1 344 0 991 316 52 10 chr11 19580177 19580662 -131202891 + LTR33 LTR ERVL 7 511 -10 7389 36 6 0 chr11 19581606 19583114 -131200439 + L1PA4 LINE L1 4641 6153 -2 504 78 0 0 chr11 19584601 19584678 -131198875 - L1PB1 LINE L1 0 6151 6075 3916 88 29 2 chr11 19584760 19585342 -131198211 - L1PB1 LINE L1 -69 6082 5485 26 30 0 0 chr11 19586503 19586536 -131197017 + AT_rich Low_complexity Low_complexity 1 33 0 396 261 60 55 chr11 19586811 19587010 -131196543 - L2 LINE L2 -1481 1833 1634 197 319 50 67 chr11 19587533 19587558 -131195995 - L2 LINE L2 -9 3304 3280 1503 189 107 14 chr11 19587558 19587913 -131195640 + MLT1B LTR MaLR 1 388 -2 197 319 50 67 chr11 19587913 19588006 -131195547 - L2 LINE L2 -33 3280 3188 239 271 62 35 chr11 19588292 19588436 -131195117 - L2 LINE L2 -1348 1966 1819 640 299 81 41 chr11 19589162 19589527 -131194026 + L1MC4a LINE L1 5302 5651 -2157 228 35 0 0 chr11 19589527 19589556 -131193997 + (TA)n Simple_repeat Simple_repeat 1 29 0 640 299 81 41 chr11 19589556 19589705 -131193848 + L1MC4a LINE L1 5651 5844 -1964 1806 186 3 0 chr11 19589705 19590016 -131193537 + AluJo SINE Alu 1 312 0 640 299 81 41 chr11 19590016 19590081 -131193472 + L1MC4a LINE L1 5844 5905 -1903 473 32 16 0 chr11 19590097 19590160 -131193393 + (TA)n Simple_repeat Simple_repeat 1 64 0 53 40 0 0 chr11 19590325 19590399 -131193154 + AT_rich Low_complexity Low_complexity 1 74 0 1031 287 123 38 chr11 19590508 19591173 -131192380 - L2 LINE L2 -1469 1845 1124 2672 242 48 42 chr11 19591176 19592190 -131191363 + L1MD2 LINE L1 5325 6344 -15 307 274 48 0 chr11 19592192 19592276 -131191277 - L2 LINE L2 -2577 737 650 213 39 0 0 chr11 19594347 19594373 -131189180 + (TGAG)n Simple_repeat Simple_repeat 2 27 0 4773 75 11 5 chr11 19594670 19595362 -131188191 - L1PA8 LINE L1 -6 6166 5437 * 5329 106 13 1 chr11 19595355 19596236 -131187317 + L1P LINE L1 4541 5429 -702 183 220 140 0 chr11 19596709 19596759 -131186794 + L2 LINE L2 3216 3272 0 1306 247 23 3 chr11 19598082 19598434 -131185119 - L1MB4 LINE L1 -1 6179 5821 345 289 114 30 chr11 19600469 19600635 -131182918 - MIR SINE MIR -62 200 21 217 314 29 0 chr11 19600955 19601025 -131182528 + L2 LINE L2 3242 3313 0 237 395 12 12 chr11 19601796 19601882 -131181671 + L2 LINE L2 3134 3219 -53 228 367 70 0 chr11 19601889 19602047 -131181506 - MIR3 SINE MIR -37 171 3 410 293 102 59 chr11 19602124 19602380 -131181173 + MLT1J LTR MaLR 7 273 -238 1604 216 6 29 chr11 19602494 19602845 -131180708 + MER2 DNA MER2_type 1 343 -1 1026 312 78 19 chr11 19603136 19603598 -131179955 + LTR33 LTR ERVL 31 519 -2 31418 119 13 53 chr11 19604414 19610482 -131173071 - L1PA7 LINE L1 -327 5827 12 21966 106 17 29 chr11 19610495 19612609 -131170944 + L1PA8 LINE L1 1862 3999 -2173 5413 150 27 18 chr11 19612609 19613569 -131169984 + LTR5 LTR ERVK 1 969 0 21966 106 17 29 chr11 19613569 19614904 -131168649 + L1PA8 LINE L1 3999 5268 -904 2284 109 0 7 chr11 19614904 19615207 -131168346 - AluSx SINE Alu -11 301 1 21966 106 17 29 chr11 19615207 19616096 -131167457 + L1PA8 LINE L1 5268 6166 -6 1733 227 55 98 chr11 19616047 19616799 -131166754 + L1MD2 LINE L1 5631 6349 -10 * 244 230 23 35 chr11 19616802 19616889 -131166664 - L2 LINE L2 -2581 733 648 21 0 0 0 chr11 19617916 19617937 -131165616 + AT_rich Low_complexity Low_complexity 1 21 0 2403 70 0 0 chr11 19618880 19619164 -131164389 - AluY SINE Alu -26 285 2 203 275 156 46 chr11 19619356 19619465 -131164088 + L2 LINE L2 3139 3259 -13 242 328 0 15 chr11 19620703 19620770 -131162783 - L2 LINE L2 -86 3186 3121 1301 248 17 0 chr11 19621564 19621915 -131161638 - L1MB4 LINE L1 0 6180 5824 199 359 57 0 chr11 19623945 19624051 -131159502 - MIR SINE MIR -62 200 89 194 286 43 14 chr11 19624438 19624508 -131159045 + L2 LINE L2 3242 3313 0 238 301 49 8 chr11 19625103 19625226 -131158327 - MIR SINE MIR -37 225 98 238 357 70 19 chr11 19625863 19626020 -131157533 - MIR3 SINE MIR -37 171 7 368 309 127 45 chr11 19626080 19626394 -131157159 + MLT1J LTR MaLR 4 343 -168 1237 264 9 23 chr11 19626449 19626797 -131156756 + MER2 DNA MER2_type 2 344 0 970 289 65 40 chr11 19627086 19627271 -131156282 + LTR33 LTR ERVL 31 210 -311 2707 143 29 7 chr11 19627271 19627690 -131155863 - MSTA LTR MaLR 0 428 1 970 289 65 40 chr11 19627690 19627981 -131155572 + LTR33 LTR ERVL 210 519 -2 1002 169 0 6 chr11 19628665 19628831 -131154722 + Tigger1 DNA MER2_type 1913 2077 -341 212 57 0 29 chr11 19628839 19628874 -131154679 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 7711 24 6 4 chr11 19628874 19630039 -131153514 - L1PA3 LINE L1 -24 6131 4965 1365 212 72 0 chr11 19630039 19630346 -131153207 + Tigger1 DNA MER2_type 2089 2417 -1 1733 180 0 0 chr11 19630702 19630991 -131152562 + AluJb SINE Alu 24 312 0 195 129 0 0 chr11 19630995 19631026 -131152527 + (A)n Simple_repeat Simple_repeat 1 31 0 1391 183 95 0 chr11 19631077 19631340 -131152213 + AluSx SINE Alu 1 288 -24 25 0 0 0 chr11 19631340 19631365 -131152188 + AT_rich Low_complexity Low_complexity 1 25 0 1024 289 88 24 chr11 19631441 19632029 -131151524 + L1MC4a LINE L1 5286 5911 -1897 1051 301 103 38 chr11 19632277 19632944 -131150609 - L2 LINE L2 -1482 1832 1122 1018 274 72 3 chr11 19632944 19633291 -131150262 + L1MD2 LINE L1 5324 5694 -665 * 16233 160 12 110 chr11 19633288 19635931 -131147622 + L1PA8 LINE L1 2 2122 -4024 181 0 33 33 chr11 19635931 19635961 -131147592 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 16233 160 12 110 chr11 19635961 19637328 -131146225 + L1PA8 LINE L1 2122 3621 -2525 12641 112 7 3 chr11 19637428 19639992 -131143561 + L1PA8 LINE L1 3595 6165 -7 1761 223 52 100 chr11 19639994 19640702 -131142851 + L1MD2 LINE L1 5685 6358 -1 241 250 26 26 chr11 19640722 19640798 -131142755 - L2 LINE L2 -2605 709 634 199 313 139 17 chr11 19642921 19643036 -131140517 + L2 LINE L2 3140 3268 -4 1028 219 48 10 chr11 19645113 19645405 -131138148 - L1MB4 LINE L1 0 6180 5878 180 372 108 0 chr11 19648481 19648629 -131134924 - MIR SINE MIR -63 199 36 232 414 23 0 chr11 19649128 19649215 -131134338 + L2 LINE L2 3132 3220 -52 215 337 12 0 chr11 19649221 19649307 -131134246 - MIR3 SINE MIR -37 171 85 252 326 82 0 chr11 19649532 19649630 -131133923 + MLT1J2 LTR MaLR 67 172 -278 1203 251 6 26 chr11 19649870 19650181 -131133372 + MER2 DNA MER2_type 41 345 0 898 293 68 41 chr11 19650470 19650654 -131132899 + LTR33 LTR ERVL 31 208 -313 2651 142 39 7 chr11 19650654 19651069 -131132484 - MSTA LTR MaLR 0 428 1 898 293 68 41 chr11 19651069 19651352 -131132201 + LTR33 LTR ERVL 208 511 -10 2497 184 41 6 chr11 19652053 19652541 -131131012 + Tigger1 DNA MER2_type 1913 2417 -1 1596 202 10 0 chr11 19652822 19653114 -131130439 + AluJb SINE Alu 1 295 -17 1905 158 3 0 chr11 19653168 19653459 -131130094 + AluSx SINE Alu 1 292 -20 26 0 0 0 chr11 19653463 19653489 -131130064 + AT_rich Low_complexity Low_complexity 1 26 0 1089 289 84 15 chr11 19653619 19654152 -131129401 + L1MC4a LINE L1 5342 5911 -1897 27 29 0 0 chr11 19654152 19654186 -131129367 + AT_rich Low_complexity Low_complexity 1 34 0 1094 305 113 21 chr11 19654403 19655056 -131128497 - L2 LINE L2 -1480 1834 1122 1018 274 72 3 chr11 19655056 19655403 -131128150 + L1MD2 LINE L1 5324 5694 -665 * 27106 184 45 20 chr11 19655400 19660749 -131122804 + L1P3 LINE L1 2 5487 -667 1170 72 0 0 chr11 19660749 19660887 -131122666 + AluY SINE Alu 1 138 -173 5273 97 0 0 chr11 19660901 19661591 -131121962 + L1PA8 LINE L1 5476 6165 -7 1525 230 46 104 chr11 19661591 19662297 -131121256 + L1MD2 LINE L1 5685 6349 -10 371 270 10 10 chr11 19662301 19662401 -131121152 - L2 LINE L2 -2581 733 634 233 342 120 17 chr11 19664587 19664704 -131118849 + L2 LINE L2 3139 3267 -5 216 328 131 8 chr11 19665875 19665997 -131117556 - L2 LINE L2 -15 3257 3121 1330 224 29 6 chr11 19666811 19667159 -131116394 - L1MB4 LINE L1 0 6180 5825 181 343 67 0 chr11 19669165 19669270 -131114283 - MIR SINE MIR -62 200 89 216 300 29 0 chr11 19669658 19669728 -131113825 + L2 LINE L2 3242 3313 0 260 374 11 11 chr11 19670992 19671083 -131112470 + L2 LINE L2 3129 3219 -53 217 333 42 60 chr11 19671090 19671258 -131112295 - MIR3 SINE MIR -37 171 7 298 348 34 28 chr11 19671386 19671564 -131111989 + MLT1J LTR MaLR 94 272 -239 856 279 7 35 chr11 19671816 19672106 -131111447 + MER2 DNA MER2_type 63 344 -1 867 309 58 32 chr11 19672402 19672581 -131110972 + LTR33 LTR ERVL 37 210 -311 2439 169 26 9 chr11 19672581 19673001 -131110552 - MSTA LTR MaLR -1 427 1 867 309 58 32 chr11 19673001 19673284 -131110269 + LTR33 LTR ERVL 210 511 -10 2635 185 39 2 chr11 19673988 19674475 -131109078 + Tigger1 DNA MER2_type 1913 2417 -1 21 0 0 0 chr11 19674728 19674749 -131108804 + AT_rich Low_complexity Low_complexity 1 21 0 1397 196 0 0 chr11 19674768 19675008 -131108545 + AluJb SINE Alu 11 250 -62 1948 140 3 7 chr11 19675157 19675450 -131108103 + AluSx SINE Alu 1 292 -20 30 0 0 0 chr11 19675450 19675480 -131108073 + AT_rich Low_complexity Low_complexity 1 30 0 1108 288 78 29 chr11 19675535 19676147 -131107406 + L1MC4a LINE L1 5270 5911 -1897 27 62 0 0 chr11 19676149 19676197 -131107356 + AT_rich Low_complexity Low_complexity 1 48 0 1137 303 119 17 chr11 19676408 19677046 -131106507 - L2 LINE L2 -1490 1824 1122 2623 233 70 73 chr11 19677046 19678075 -131105478 + L1MD2 LINE L1 5324 6349 -10 255 313 20 10 chr11 19678078 19678177 -131105376 - L2 LINE L2 -2581 733 634 207 0 0 0 chr11 19678742 19678765 -131104788 + (TTA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr11 19678765 19678786 -131104767 + AT_rich Low_complexity Low_complexity 1 21 0 232 275 156 46 chr11 19680378 19680487 -131103066 + L2 LINE L2 3139 3259 -13 1112 238 41 6 chr11 19682602 19682946 -131100607 - L1MB4 LINE L1 0 6180 5825 13687 88 1 0 chr11 19684639 19686472 -131097081 - L1P LINE L1 -925 5221 3388 2709 20 43 0 chr11 19686885 19687190 -131096363 - AluYb8 SINE Alu 0 318 1 258 289 174 0 chr11 19687225 19687346 -131096207 - MIR3 SINE MIR -23 185 44 199 319 28 14 chr11 19687625 19687697 -131095856 - L2 LINE L2 -219 3053 2981 1352 69 126 0 chr11 19687898 19688045 -131095508 + MER107 DNA MER1_type 1 175 -22 262 67 44 0 chr11 19688045 19688090 -131095463 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1352 69 126 0 chr11 19688090 19688117 -131095436 + MER107 DNA MER1_type 175 197 0 288 295 11 21 chr11 19688283 19688378 -131095175 - MIR SINE MIR -50 212 119 1744 218 71 52 chr11 19688679 19689175 -131094378 + MLT1D LTR MaLR 1 505 0 2494 160 67 0 chr11 19689251 19689652 -131093901 - MSTA LTR MaLR 0 428 1 253 182 11 171 chr11 19690520 19690608 -131092945 - MIR3 SINE MIR -24 184 111 432 37 0 0 chr11 19690711 19690765 -131092788 + (CA)n Simple_repeat Simple_repeat 2 55 0 8136 104 4 20 chr11 19690965 19692219 -131091334 - L1MEc LINE L1 -2856 3359 2169 342 309 77 50 chr11 19692187 19692605 -131090948 - L1MEd LINE L1 -5244 875 447 * 211 62 0 62 chr11 19692607 19692655 -131090898 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 214 299 52 26 chr11 19693062 19693139 -131090414 + MIR SINE MIR 66 144 -118 6054 150 12 32 chr11 19693349 19694710 -131088843 - L1MA5 LINE L1 -38 7283 5933 * 6596 179 26 15 chr11 19694707 19696072 -131087481 - L1MA5 LINE L1 -4710 2458 1056 253 310 52 0 chr11 19696093 19696209 -131087344 + MIR SINE MIR 75 196 -66 365 342 77 15 chr11 19696229 19696425 -131087128 + MIR SINE MIR 42 249 -13 796 186 41 0 chr11 19696946 19697091 -131086462 - FRAM SINE Alu -1 175 25 189 239 68 68 chr11 19697243 19697331 -131086222 + MIR SINE MIR 56 143 -119 195 204 0 0 chr11 19698567 19698611 -131084942 + L2 LINE L2 3182 3225 -88 221 279 0 44 chr11 19698632 19698700 -131084853 - L2 LINE L2 0 3313 3249 241 318 32 48 chr11 19698998 19699124 -131084429 + MIR SINE MIR 25 148 -114 2562 200 31 82 chr11 19699125 19699773 -131083780 + LTR9 LTR ERV1 1 793 -1 839 181 42 0 chr11 19700025 19700191 -131083362 - MIR SINE MIR -21 241 69 2426 97 0 0 chr11 19700211 19700511 -131083042 + AluSx SINE Alu 1 300 -12 706 301 96 22 chr11 19701291 19701657 -131081896 - L2 LINE L2 0 3313 2921 453 259 181 30 chr11 19701718 19701988 -131081565 - L2 LINE L2 -541 2773 2463 351 280 111 65 chr11 19702082 19702450 -131081103 + L2 LINE L2 2853 3237 -76 752 274 76 16 chr11 19703810 19704113 -131079440 - L1MEd LINE L1 -5249 870 550 227 296 9 56 chr11 19704330 19704438 -131079115 - L1MEd LINE L1 -5732 387 285 419 323 95 13 chr11 19704603 19704761 -131078792 - MIR SINE MIR -78 184 14 214 323 165 0 chr11 19704847 19704980 -131078573 + L3 LINE CR1 1301 1455 -122 222 319 9 71 chr11 19705682 19705795 -131077758 - MIR SINE MIR -65 143 38 252 280 191 18 chr11 19706060 19706228 -131077325 + MIR SINE MIR 60 256 -6 462 213 195 17 chr11 19706296 19706470 -131077083 - MIR SINE MIR -9 253 49 424 321 25 0 chr11 19706570 19706729 -131076824 + MIR3 SINE MIR 35 197 -11 280 291 71 31 chr11 19707352 19707479 -131076074 + L2 LINE L2 3140 3271 -1 1124 278 86 27 chr11 19708367 19708849 -131074704 + MLT1K LTR MaLR 16 586 -2 535 191 24 6 chr11 19708928 19709096 -131074457 + (TCCA)n Simple_repeat Simple_repeat 1 171 0 316 318 75 17 chr11 19709603 19709776 -131073777 - MIR3 SINE MIR -20 188 6 2541 52 0 10 chr11 19709885 19710190 -131073363 - AluY SINE Alu -1 310 9 2888 151 17 4 chr11 19710560 19711031 -131072522 - L1PA16 LINE L1 -1 6165 5689 1702 164 11 4 chr11 19711265 19711546 -131072007 - AluSx SINE Alu -29 283 1 283 271 59 0 chr11 19711783 19711868 -131071685 - L2 LINE L2 -44 3269 3180 277 316 30 0 chr11 19711922 19712055 -131071498 - MIR3 SINE MIR 0 208 72 187 303 184 0 chr11 19712335 19712411 -131071142 - MIR SINE MIR -78 130 41 552 260 63 8 chr11 19712587 19712714 -131070839 + MER45A DNA AcHobo 1 134 -44 4076 133 29 2 chr11 19712929 19713547 -131070006 - MER41B LTR ERV1 0 635 1 2880 10 0 0 chr11 19714355 19714661 -131068892 + AluY SINE Alu 1 306 -5 181 299 191 26 chr11 19714663 19714857 -131068696 + L3 LINE CR1 1011 1236 -341 484 301 65 68 chr11 19715236 19715937 -131067616 + L2 LINE L2 2560 3270 -2 3019 184 95 74 chr11 19716387 19717031 -131066522 + L1MD2 LINE L1 4965 5594 -648 479 41 82 0 chr11 19717031 19717104 -131066449 - MADE1 DNA Mariner -1 79 1 3019 184 95 74 chr11 19717104 19717756 -131065797 + L1MD2 LINE L1 5594 6234 -8 234 243 135 0 chr11 19717827 19717901 -131065652 - L2 LINE L2 -1 3312 3229 279 258 21 75 chr11 19717934 19718027 -131065526 - MIR SINE MIR -147 115 28 723 211 0 0 chr11 19718259 19718392 -131065161 + FLAM_A SINE Alu 1 133 0 23 33 0 0 chr11 19718440 19718470 -131065083 + AT_rich Low_complexity Low_complexity 1 30 0 350 228 18 108 chr11 19720037 19720119 -131063434 - L1ME LINE L1 -439 5682 5621 2208 121 0 0 chr11 19720119 19720416 -131063137 + AluSx SINE Alu 2 298 -14 350 228 18 108 chr11 19720416 19720500 -131063053 - L1ME LINE L1 -500 5621 5531 346 275 22 29 chr11 19720738 19720876 -131062677 + MIR3 SINE MIR 4 140 -68 487 289 0 8 chr11 19721799 19721927 -131061626 + MLT1L LTR MaLR 114 240 -375 267 164 119 0 chr11 19721980 19722047 -131061506 + MLT1L LTR MaLR 405 479 -136 588 216 127 6 chr11 19722716 19722897 -131060656 + MIR SINE MIR 18 220 -42 560 299 74 22 chr11 19723113 19723344 -131060209 - MIR SINE MIR 0 262 20 1585 174 43 0 chr11 19723345 19723650 -131059903 - AluYb8 SINE Alu 0 318 1 277 281 35 61 chr11 19725154 19725202 -131058351 - MER81 DNA DNA 0 114 66 1722 149 51 60 chr11 19725202 19725517 -131058036 + AluSx SINE Alu 1 312 0 277 281 35 61 chr11 19725517 19725582 -131057971 - MER81 DNA DNA -48 66 4 903 270 52 11 chr11 19726086 19726247 -131057306 + LTR16A1 LTR ERVL 180 358 -99 1740 192 157 17 chr11 19726247 19726654 -131056899 - MLT2C2 LTR ERVL 0 464 1 903 270 52 11 chr11 19726654 19726759 -131056794 + LTR16A1 LTR ERVL 358 457 0 266 283 26 44 chr11 19726801 19726914 -131056639 + L2 LINE L2 3166 3276 -37 660 265 62 9 chr11 19727321 19727532 -131056021 + LTR33A LTR ERVL 293 514 -9 193 125 0 25 chr11 19727537 19727577 -131055976 + L2 LINE L2 3267 3305 -8 288 256 16 83 chr11 19727675 19727796 -131055757 - MLT1K LTR MaLR -340 248 136 206 256 323 15 chr11 19728334 19728467 -131055086 - MIR SINE MIR -54 208 35 388 321 103 22 chr11 19728497 19728685 -131054868 + L3 LINE CR1 1168 1339 -238 2582 40 7 7 chr11 19728685 19728988 -131054565 + AluY SINE Alu 1 303 -8 388 321 103 22 chr11 19728988 19729166 -131054387 + L3 LINE CR1 1339 1564 -13 1972 131 25 0 chr11 19729280 19729562 -131053991 + AluJo SINE Alu 8 296 -16 358 287 29 15 chr11 19730308 19730444 -131053109 - MIR SINE MIR -55 153 16 281 250 40 0 chr11 19730989 19731065 -131052488 - L2 LINE L2 -6 3307 3229 367 216 108 61 chr11 19731902 19732050 -131051503 - MIR SINE MIR -1 261 107 239 200 36 18 chr11 19732464 19732519 -131051034 - L2 LINE L2 -16 3256 3201 338 313 18 102 chr11 19732544 19732819 -131050734 - L2 LINE L2 -1 3271 3020 210 143 0 0 chr11 19733116 19733151 -131050402 + (CA)n Simple_repeat Simple_repeat 1 35 0 265 302 71 0 chr11 19733429 19733555 -131049998 + MIR3 SINE MIR 12 146 -62 225 333 128 0 chr11 19733714 19733831 -131049722 + L2 LINE L2 3125 3256 -16 376 260 14 68 chr11 19734469 19734615 -131048938 + L2 LINE L2 3134 3271 -1 298 291 18 91 chr11 19734695 19734808 -131048745 - MIR3 SINE MIR -21 187 88 2545 138 13 0 chr11 19734808 19735193 -131048360 + MLT1B LTR MaLR 1 390 0 298 291 18 91 chr11 19735193 19735244 -131048309 - MIR3 SINE MIR -120 88 35 776 255 5 25 chr11 19735335 19735539 -131048014 - MIR SINE MIR -3 259 60 3399 25 8 0 chr11 19735609 19736004 -131047549 - L1PA5 LINE L1 0 6154 5757 28 48 0 0 chr11 19736248 19736290 -131047263 + AT_rich Low_complexity Low_complexity 1 42 0 215 160 20 20 chr11 19736658 19736708 -131046845 - MIR SINE MIR -76 132 83 694 286 30 0 chr11 19736728 19736927 -131046626 - MIR SINE MIR -3 259 55 340 327 9 0 chr11 19738019 19738126 -131045427 + L2 LINE L2 3203 3310 -3 421 282 15 8 chr11 19738852 19738983 -131044570 - MIR SINE MIR -74 188 57 409 215 75 28 chr11 19738987 19739094 -131044459 - L2 LINE L2 -2 3311 3200 1088 248 49 54 chr11 19739143 19739183 -131044370 + L2 LINE L2 2804 2843 -470 2186 86 17 3 chr11 19739183 19739473 -131044080 - AluSc SINE Alu -15 294 1 1088 248 49 54 chr11 19739473 19739907 -131043646 + L2 LINE L2 2843 3312 -1 204 205 0 0 chr11 19739981 19740020 -131043533 + CT-rich Low_complexity Low_complexity 2 40 0 1306 235 195 10 chr11 19740203 19740701 -131042852 - MLT1G LTR MaLR 0 590 1 190 211 0 39 chr11 19740941 19740993 -131042560 - MIR3 SINE MIR -5 203 154 202 290 136 32 chr11 19741156 19741311 -131042242 - MIR3 SINE MIR -28 180 10 491 269 39 8 chr11 19741434 19741564 -131041989 + L2 LINE L2 3180 3313 0 182 396 36 7 chr11 19741837 19741976 -131041577 - MIR3 SINE MIR -6 202 60 890 260 239 24 chr11 19742272 19742477 -131041076 - Charlie7 DNA MER1_type -1928 684 524 189 0 0 0 chr11 19742477 19742498 -131041055 + (TTA)n Simple_repeat Simple_repeat 1 21 0 890 260 239 24 chr11 19742498 19742753 -131040800 - Charlie7 DNA MER1_type -2088 524 125 22 80 0 0 chr11 19742819 19742869 -131040684 + AT_rich Low_complexity Low_complexity 1 50 0 1375 191 3 67 chr11 19743417 19743732 -131039821 + AluJo SINE Alu 5 299 -13 316 260 152 83 chr11 19743780 19743846 -131039707 + L1ME4a LINE L1 5314 5374 -747 180 0 0 0 chr11 19743846 19743866 -131039687 + (CAA)n Simple_repeat Simple_repeat 2 21 0 316 260 152 83 chr11 19743866 19744471 -131039082 + L1ME4a LINE L1 5374 6021 -100 24 91 0 0 chr11 19744534 19744600 -131038953 + AT_rich Low_complexity Low_complexity 1 66 0 3230 198 88 19 chr11 19745137 19746101 -131037452 + L1ME1 LINE L1 5089 6140 -26 7135 169 10 3 chr11 19746187 19746393 -131037160 - L1PA14 LINE L1 -1 6160 5957 2083 132 3 43 chr11 19746393 19746718 -131036835 - AluSx SINE Alu 0 312 1 7135 169 10 3 chr11 19746718 19748592 -131034961 - L1PA14 LINE L1 -204 5957 4078 28 29 0 0 chr11 19748602 19748637 -131034916 + AT_rich Low_complexity Low_complexity 1 35 0 424 212 113 52 chr11 19748669 19748881 -131034672 - MARNA DNA Mariner -141 445 221 226 298 53 0 chr11 19748912 19748969 -131034584 + Tigger3(Golem) DNA MER2_type 1 60 -2969 761 247 0 0 chr11 19748970 19749120 -131034433 + Tigger3(Golem) DNA MER2_type 2888 3037 0 2117 243 67 58 chr11 19749217 19749593 -131033960 - L1M4 LINE L1 -1886 4260 3889 23 68 0 0 chr11 19749593 19749637 -131033916 + AT_rich Low_complexity Low_complexity 1 44 0 2117 243 67 58 chr11 19749637 19749879 -131033674 - L1M4 LINE L1 -2257 3889 3651 2358 73 14 0 chr11 19749879 19750166 -131033387 + AluY SINE Alu 1 291 -20 2117 243 67 58 chr11 19750166 19750790 -131032763 - L1M4 LINE L1 -2495 3651 2975 1301 104 0 0 chr11 19750910 19751083 -131032470 - AluSg/x SINE Alu -8 304 132 207 0 0 0 chr11 19751083 19751106 -131032447 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1860 81 0 4 chr11 19751106 19751353 -131032200 - AluY SINE Alu -31 280 35 1421 291 94 52 chr11 19751357 19751705 -131031848 - L1MEc LINE L1 -4932 1464 1132 2092 108 11 0 chr11 19751705 19751982 -131031571 - AluSx SINE Alu -11 301 22 1421 291 94 52 chr11 19751982 19753006 -131030547 - L1MEc LINE L1 -5264 1132 35 1259 264 40 73 chr11 19753043 19753773 -131029780 + L1ME3 LINE L1 5257 5962 -208 312 301 55 41 chr11 19753804 19753950 -131029603 + L1ME3 LINE L1 5934 6081 -81 207 0 0 0 chr11 19753990 19754013 -131029540 + (TA)n Simple_repeat Simple_repeat 1 23 0 333 258 203 8 chr11 19754102 19754230 -131029323 + MARNA DNA Mariner 396 548 -38 1739 153 0 70 chr11 19754283 19754420 -131029133 + AluJo SINE Alu 1 146 -166 4003 64 6 2 chr11 19754420 19754935 -131028618 + L1PA7 LINE L1 5634 6150 -4 1739 153 0 70 chr11 19754935 19755111 -131028442 + AluJo SINE Alu 146 292 -20 40869 32 23 2 chr11 19755130 19761149 -131022404 + L1PA3 LINE L1 3 6155 0 416 164 0 0 chr11 19761996 19762069 -131021484 - MLT1E LTR MaLR 0 624 552 240 154 0 0 chr11 19762061 19762100 -131021453 - tRNA-Ile-ATT tRNA tRNA -38 39 1 * 1442 264 114 24 chr11 19762106 19762599 -131020954 - MLT1E LTR MaLR -56 537 1 832 125 0 0 chr11 19762802 19762914 -131020639 - AluSg/x SINE Alu -10 300 189 272 269 126 59 chr11 19763387 19763506 -131020047 + L2 LINE L2 3146 3272 0 306 0 0 0 chr11 19764502 19764536 -131019017 + (TG)n Simple_repeat Simple_repeat 2 35 0 2182 97 24 0 chr11 19764903 19765191 -131018362 + AluSx SINE Alu 1 295 -17 699 335 61 31 chr11 19765321 19765780 -131017773 + L2 LINE L2 2543 3013 -300 238 140 20 20 chr11 19767090 19767140 -131016413 + MARNA DNA Mariner 195 244 -342 228 147 0 0 chr11 19767767 19767801 -131015752 + Charlie5 DNA MER1_type 164 197 -2415 2141 104 40 0 chr11 19768754 19769052 -131014501 + AluY SINE Alu 1 310 -1 267 210 16 0 chr11 19769116 19769178 -131014375 - L3b LINE CR1 -174 1409 1347 407 375 34 11 chr11 19770353 19770529 -131013024 + L3 LINE CR1 1398 1577 0 1080 263 344 7 chr11 19773615 19774182 -131009371 + L2 LINE L2 2060 2817 -497 506 239 103 19 chr11 19774184 19774339 -131009214 + L2 LINE L2 3142 3309 -4 474 306 180 13 chr11 19774754 19775143 -131008410 + L2 LINE L2 1951 2404 -910 2118 104 0 0 chr11 19775403 19775673 -131007880 + AluSq SINE Alu 35 304 -9 281 226 400 32 chr11 19776506 19776661 -131006892 + MIR SINE MIR 36 247 -15 511 293 246 20 chr11 19776665 19777231 -131006322 + L2 LINE L2 2364 3055 -258 183 273 18 0 chr11 19778795 19778850 -131004703 + MIR SINE MIR 110 165 -97 202 256 0 0 chr11 19778899 19778942 -131004611 + (TTA)n Simple_repeat Simple_repeat 2 44 0 243 275 22 11 chr11 19779651 19779742 -131003811 + MER112 DNA MER1_type 156 247 -13 381 327 114 15 chr11 19781300 19781502 -131002051 + MIR SINE MIR 30 251 -11 23 54 0 0 chr11 19781505 19781542 -131002011 + AT_rich Low_complexity Low_complexity 1 37 0 784 275 183 39 chr11 19781765 19782202 -131001351 + L3 LINE CR1 782 1281 -296 288 250 0 53 chr11 19782292 19782368 -131001185 + L3 LINE CR1 1298 1369 -208 330 329 140 12 chr11 19784716 19784880 -130998673 - MIR3 SINE MIR -21 187 3 227 295 18 43 chr11 19785408 19785557 -130997996 - MIR SINE MIR -87 175 16 308 302 122 34 chr11 19786924 19787129 -130996424 + L3b LINE CR1 1153 1375 -208 21 0 0 0 chr11 19787220 19787241 -130996312 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr11 19787836 19787868 -130995685 + AT_rich Low_complexity Low_complexity 1 32 0 1626 173 0 4 chr11 19787896 19788151 -130995402 - AluJb SINE Alu -24 288 35 413 313 0 0 chr11 19788946 19789058 -130994495 + L3 LINE CR1 1338 1449 -128 198 0 0 0 chr11 19790446 19790468 -130993085 + (T)n Simple_repeat Simple_repeat 1 22 0 312 344 32 16 chr11 19790693 19790818 -130992735 + MIR SINE MIR 20 146 -62 519 263 145 7 chr11 19790865 19791017 -130992536 - MIR3 SINE MIR -6 202 30 192 77 0 0 chr11 19791494 19791520 -130992033 + (TAA)n Simple_repeat Simple_repeat 2 27 0 209 234 0 21 chr11 19791521 19791568 -130991985 + GA-rich Low_complexity Low_complexity 3 48 0 312 255 38 28 chr11 19792008 19792114 -130991439 + MIR SINE MIR 15 121 -141 2184 85 0 0 chr11 19792131 19792441 -130991112 - AluSg SINE Alu 0 310 1 183 310 80 10 chr11 19792446 19792546 -130991007 - MIR SINE MIR -49 213 107 196 331 71 43 chr11 19793815 19793999 -130989554 - L2 LINE L2 -187 3085 2897 586 182 0 0 chr11 19794099 19794198 -130989355 - Tigger7 DNA MER2_type 0 2487 2389 1155 187 44 4 chr11 19794209 19794434 -130989119 - Tigger7 DNA MER2_type -470 235 2 2695 45 0 6 chr11 19795177 19795488 -130988065 + AluY SINE Alu 1 309 -2 304 326 0 0 chr11 19796783 19796872 -130986681 + L2 LINE L2 2718 2806 -508 245 258 30 0 chr11 19796982 19797048 -130986505 - MIR SINE MIR -125 137 70 206 250 12 88 chr11 19797054 19797134 -130986419 + L2 LINE L2 3236 3309 -4 199 324 213 0 chr11 19797340 19797448 -130986105 + MER5A DNA MER1_type 58 188 -1 764 269 28 43 chr11 19797531 19797784 -130985769 + MIR SINE MIR 12 260 -2 681 285 208 6 chr11 19797841 19798392 -130985161 + LTR50 LTR ERVL 30 795 0 332 288 291 26 chr11 19798405 19798783 -130984770 - L2 LINE L2 -688 2626 2149 2095 106 11 0 chr11 19798975 19799282 -130984271 + AluSp SINE Alu 1 310 0 1845 110 0 4 chr11 19799436 19799682 -130983871 + AluSx SINE Alu 55 299 -13 557 216 163 14 chr11 19800101 19800435 -130983118 - MLT1J2 LTR MaLR 0 450 37 460 300 108 96 chr11 19800567 19800964 -130982589 - L2 LINE L2 -1 3271 2870 2359 134 13 10 chr11 19801043 19801432 -130982121 + MLT1B LTR MaLR 1 390 0 2216 119 0 3 chr11 19802949 19803251 -130980302 + AluSx SINE Alu 2 302 -10 2236 215 16 2 chr11 19803713 19804221 -130979332 - L1 LINE L1 -3237 2909 2395 1670 121 15 134 chr11 19804230 19804619 -130978934 + LTR3b LTR ERVK 158 500 0 361 225 139 96 chr11 19804941 19805150 -130978403 + HERVK3 LTR ERVK 55 272 -6971 265 236 0 79 chr11 19805214 19805303 -130978250 + HERVK3 LTR ERVK 586 667 -6576 3909 221 68 8 chr11 19805307 19806239 -130977314 + HERVK3 LTR ERVK 1321 2308 -4935 2443 129 9 46 chr11 19806240 19806760 -130976793 + HERVK3 LTR ERVK 2996 5572 -373 1276 153 9 5 chr11 19806760 19806976 -130976577 + PRIMA41-int LTR ERV1 7540 7756 0 * 1355 87 11 0 chr11 19806793 19806978 -130976575 + HERVK3 LTR ERVK 5575 5761 -184 338 168 0 19 chr11 19806980 19807051 -130976502 + MER41C LTR ERV1 5 61 -493 436 0 0 0 chr11 19807051 19807101 -130976452 + HERVK14 LTR ERVK 5835 5884 -61 1630 153 52 9 chr11 19807123 19807449 -130976104 + LTR3b LTR ERVK 158 497 -3 564 90 0 0 chr11 19807449 19807527 -130976026 + LTR3b LTR ERVK 423 500 0 319 131 54 161 chr11 19807539 19807669 -130975884 - L1 LINE L1 -3756 2390 2275 * 13004 114 62 22 chr11 19807668 19809998 -130973555 - L1PBa LINE L1 -3999 2864 443 1686 135 74 37 chr11 19810011 19810336 -130973217 - LTR10A LTR ERV1 -61 548 212 24 0 0 0 chr11 19811003 19811027 -130972526 + AT_rich Low_complexity Low_complexity 1 24 0 1580 109 8 0 chr11 19811030 19811278 -130972275 - L1MA1 LINE L1 -4 7717 7468 31096 70 15 8 chr11 19811280 19816551 -130967002 - L1PA6 LINE L1 -4 6150 847 618 102 0 0 chr11 19816549 19816637 -130966916 - L1PA6 LINE L1 -6048 98 11 * 4946 113 30 19 chr11 19816647 19817671 -130965882 - L1MA1 LINE L1 -229 7492 6458 * 17121 177 65 12 chr11 19817638 19823296 -130960257 - L1MA1 LINE L1 -1588 5977 13 9963 157 50 4 chr11 19823298 19825173 -130958380 + Tigger1 DNA MER2_type 4 1963 -455 1627 96 50 27 chr11 19825186 19825401 -130958152 - L1PA14 LINE L1 -4 6157 5933 8492 64 5 1 chr11 19825401 19826468 -130957085 - MER11C LTR ERVK 0 1071 1 1627 96 50 27 chr11 19826468 19826513 -130957040 - L1PA14 LINE L1 -228 5933 5891 1811 133 77 9 chr11 19826513 19826831 -130956722 + THE1C LTR MaLR 1 340 -35 1426 138 40 28 chr11 19826831 19827084 -130956469 - THE1B LTR MaLR 0 364 109 1215 149 37 97 chr11 19827074 19827395 -130956158 + THE1C LTR MaLR 74 375 0 * 9809 118 24 37 chr11 19827398 19828996 -130954557 + THE1C-int LTR MaLR 4 1580 0 1626 148 50 78 chr11 19828998 19829382 -130954171 + THE1C LTR MaLR 3 375 0 646 214 0 0 chr11 19829397 19829523 -130954030 + Tigger1 DNA MER2_type 1950 2075 -343 1838 159 11 0 chr11 19829523 19829868 -130953685 - AluJb SINE Alu 0 348 1 1357 154 16 4 chr11 19829869 19830115 -130953438 + Tigger1 DNA MER2_type 2064 2312 -106 13618 195 32 14 chr11 19830133 19834935 -130948618 - L1PB1 LINE L1 -8 6859 1760 2301 112 0 0 chr11 19834935 19835230 -130948323 - AluSc SINE Alu -14 295 1 13618 195 32 14 chr11 19835230 19836246 -130947307 - L1PB1 LINE L1 -5107 1760 765 1166 258 53 43 chr11 19836244 19836775 -130946778 - L1PB1 LINE L1 -6312 551 16 * 875 252 22 6 chr11 19836776 19837098 -130946455 - L1M4 LINE L1 -842 5304 4978 * 3182 228 60 45 chr11 19837093 19837504 -130946049 - L1M4 LINE L1 -2684 3462 3059 840 93 16 0 chr11 19837504 19837633 -130945920 - L1PA13 LINE L1 -5 6158 6028 3182 228 60 45 chr11 19837633 19838452 -130945101 - L1M4 LINE L1 -3087 3059 2213 499 306 35 26 chr11 19838555 19838784 -130944769 - MIR SINE MIR -28 234 4 198 369 0 0 chr11 19839272 19839337 -130944216 - MIR SINE MIR -101 107 43 509 271 19 52 chr11 19840142 19840297 -130943256 + MIR3 SINE MIR 48 197 -11 284 287 58 0 chr11 19840974 19841061 -130942492 + L3 LINE CR1 1402 1493 -84 264 309 165 0 chr11 19841098 19841195 -130942358 - L2 LINE L2 -21 3251 3139 22 35 0 0 chr11 19841270 19841299 -130942254 + AT_rich Low_complexity Low_complexity 1 29 0 272 348 68 0 chr11 19841581 19841699 -130941854 - MIR3 SINE MIR -29 179 54 471 204 0 0 chr11 19842362 19842455 -130941098 + MLT1I LTR MaLR 315 407 -2 338 333 69 23 chr11 19842768 19842942 -130940611 - MER5A DNA MER1_type 0 189 8 1082 285 31 29 chr11 19843025 19843474 -130940079 - LTR16A1 LTR ERVL -2 455 6 2152 186 86 49 chr11 19843558 19844151 -130939402 - L1MB7 LINE L1 -58 6126 5512 818 324 7 4 chr11 19844155 19844436 -130939117 - HERV16 LTR ERVL -2473 3181 2900 1154 311 78 34 chr11 19844454 19845221 -130938332 - HERV16 LTR ERVL -2640 2356 1781 354 218 0 0 chr11 19845251 19845338 -130938215 - L1MC4 LINE L1 0 8042 7956 1732 231 78 25 chr11 19845347 19845862 -130937691 - L1MC4 LINE L1 -335 7707 7166 428 281 14 13 chr11 19846295 19846455 -130937098 - L1M4 LINE L1 -5722 924 543 438 255 46 0 chr11 19846830 19846983 -130936570 - L1M4 LINE L1 -6382 160 1 609 143 45 30 chr11 19847034 19847167 -130936386 - L1MA7 LINE L1 -220 6071 5937 820 292 44 49 chr11 19847300 19847731 -130935822 + LTR33 LTR ERVL 93 521 0 1923 161 138 5 chr11 19848651 19849029 -130934524 - MSTA LTR MaLR 0 428 1 907 336 90 4 chr11 19849231 19849719 -130933834 - L2 LINE L2 -2133 1181 652 23 86 0 0 chr11 19850038 19850096 -130933457 + AT_rich Low_complexity Low_complexity 1 58 0 2418 170 7 49 chr11 19850527 19850808 -130932745 + MER54A LTR ERVL 1 250 -651 2355 106 0 0 chr11 19850808 19851110 -130932443 - AluSx SINE Alu -10 302 1 2418 170 7 49 chr11 19851110 19851335 -130932218 + MER54A LTR ERVL 250 483 -418 1700 160 50 6 chr11 19851336 19851654 -130931899 + L1MA4 LINE L1 5953 6284 -16 2105 137 28 0 chr11 19852740 19853061 -130930492 - L1PB1 LINE L1 -2 6149 5820 4404 242 67 35 chr11 19853370 19853923 -130929630 + L1MC2 LINE L1 888 1422 -5004 7768 45 6 0 chr11 19853923 19855193 -130928360 - L1PA5 LINE L1 -3 6151 4879 4404 242 67 35 chr11 19855193 19856710 -130926843 + L1MC2 LINE L1 1422 3233 -3193 2264 122 0 0 chr11 19856710 19857021 -130926532 + AluSx SINE Alu 1 311 -1 4404 242 67 35 chr11 19857021 19857783 -130925770 + L1MC2 LINE L1 3233 3969 -2457 934 248 16 16 chr11 19857825 19858079 -130925474 + MER74B LTR ERVL 59 312 -310 3792 212 14 14 chr11 19858080 19859021 -130924532 + L1MC2 LINE L1 5427 6364 -260 1137 243 6 54 chr11 19859178 19859495 -130924058 + AluSx SINE Alu 1 302 0 464 330 46 27 chr11 19859512 19859773 -130923780 + L1M3d LINE L1 6 271 -5620 427 324 88 49 chr11 19859748 19859952 -130923601 + L1M3de LINE L1 572 783 -5870 * 544 316 41 10 chr11 19859962 19860158 -130923395 + L1M3de LINE L1 814 1015 -5638 448 225 11 11 chr11 19860178 19860267 -130923286 + L1MA7 LINE L1 1111 1199 -6287 295 287 53 21 chr11 19860270 19860364 -130923189 + L1MA7 LINE L1 1752 1848 -5638 349 257 30 30 chr11 19860371 19860472 -130923081 + L1M3de LINE L1 382 482 -6287 432 280 0 20 chr11 19860481 19860581 -130922972 + L1M3de LINE L1 385 482 -6287 4359 229 26 24 chr11 19860619 19861615 -130921938 + L1M3de LINE L1 1076 2073 -4696 979 254 8 12 chr11 19861610 19861858 -130921695 + L1M3de LINE L1 2350 2596 -4253 * 24504 162 28 26 chr11 19861859 19865822 -130917731 + L1PA10 LINE L1 1 4054 -2429 216 0 0 0 chr11 19865822 19865846 -130917707 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 24504 162 28 26 chr11 19865846 19868283 -130915270 + L1PA10 LINE L1 4054 6483 0 798 246 124 46 chr11 19868336 19868876 -130914677 + L1MA7 LINE L1 2977 3558 -4007 9782 180 31 31 chr11 19868880 19869796 -130913757 + L1MA7 LINE L1 3858 4773 -2958 1427 103 0 0 chr11 19869796 19869981 -130913572 + AluSp SINE Alu 128 312 -1 9782 180 31 31 chr11 19869981 19871772 -130911781 + L1MA7 LINE L1 4773 6563 -1168 1148 149 0 61 chr11 19871772 19872000 -130911553 + L1MA6 LINE L1 6074 6287 -13 9782 180 31 31 chr11 19872000 19872916 -130910637 + L1MA7 LINE L1 6563 7478 -253 6502 103 17 0 chr11 19872916 19874476 -130909077 + L1PA14 LINE L1 4577 6159 -2 2696 112 2 25 chr11 19874476 19874870 -130908683 + L1PA14 LINE L1 5770 6161 0 9782 180 31 31 chr11 19874870 19874896 -130908657 + L1MA7 LINE L1 7477 7502 -229 1785 154 0 31 chr11 19874896 19875189 -130908364 + AluSx SINE Alu 7 290 -22 9782 180 31 31 chr11 19875189 19875204 -130908349 + L1MA7 LINE L1 7502 7516 -215 2116 73 8 0 chr11 19875204 19875465 -130908088 - L1PA10 LINE L1 -9 6159 5897 9782 180 31 31 chr11 19875465 19875610 -130907943 + L1MA7 LINE L1 7516 7698 -33 3479 211 47 18 chr11 19875628 19876572 -130906981 + L1ME2 LINE L1 5191 6163 -1 352 329 70 13 chr11 19878615 19878773 -130904780 - MIR SINE MIR -76 186 20 278 352 56 0 chr11 19879123 19879231 -130904322 + L2 LINE L2 3146 3259 -13 180 97 0 0 chr11 19879242 19879273 -130904280 + (CATG)n Simple_repeat Simple_repeat 2 32 0 681 282 31 5 chr11 19879886 19880081 -130903472 - MIR SINE MIR -48 214 15 2458 56 0 20 chr11 19880569 19880871 -130902682 - AluY SINE Alu -15 296 1 188 372 74 14 chr11 19880982 19881130 -130902423 - MIR3 SINE MIR -37 171 15 252 269 179 14 chr11 19881390 19881535 -130902018 + MLT1J LTR MaLR 227 395 -116 1073 234 79 89 chr11 19882009 19882402 -130901151 + LTR33 LTR ERVL 131 519 -2 249 302 17 35 chr11 19883359 19883475 -130900078 - HAL1b LINE L1 -452 896 783 183 80 0 0 chr11 19883590 19883615 -130899938 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 286 316 105 0 chr11 19883619 19883714 -130899839 - L2 LINE L2 -18 3295 3191 403 277 95 19 chr11 19884052 19884315 -130899238 - L1MEd LINE L1 -797 1693 1286 482 260 73 0 chr11 19884499 19884649 -130898904 + MIR SINE MIR 81 241 -21 728 219 118 32 chr11 19884651 19884930 -130898623 - L1MEd LINE L1 -4924 1195 893 1590 11 6 0 chr11 19885032 19885210 -130898343 - L1PA4 LINE L1 -220 5935 5757 446 288 139 0 chr11 19885521 19885712 -130897841 + MIR SINE MIR 33 249 -13 2443 48 3 35 chr11 19885716 19886029 -130897524 - AluY SINE Alu -8 303 1 216 250 47 16 chr11 19886219 19886283 -130897270 - L2 LINE L2 0 3272 3207 2650 90 55 3 chr11 19886599 19886945 -130896608 + THE1B LTR MaLR 1 364 0 903 187 6 22 chr11 19889225 19889407 -130894146 + MIR SINE MIR 79 257 -5 269 279 154 22 chr11 19889771 19889938 -130893615 - MIR3 SINE MIR -62 200 8 354 23 0 0 chr11 19891434 19891477 -130892076 + (TG)n Simple_repeat Simple_repeat 1 43 0 310 308 106 0 chr11 19892807 19892911 -130890642 + L2 LINE L2 3150 3264 -8 207 0 0 0 chr11 19892913 19892936 -130890617 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 282 294 24 12 chr11 19892950 19893035 -130890518 - MIR SINE MIR -103 105 20 1156 148 16 40 chr11 19893167 19893417 -130890136 + Charlie5 DNA MER1_type 2377 2620 0 450 307 40 3 chr11 19893907 19894069 -130889484 - MIR SINE MIR -62 146 19 549 129 12 0 chr11 19894991 19895076 -130888477 - MER5A DNA MER1_type -103 86 1 252 261 75 53 chr11 19895440 19895600 -130887953 + MIR SINE MIR 49 204 -58 188 194 296 31 chr11 19895721 19895819 -130887734 + MER5A DNA MER1_type 43 166 -23 * 458 220 40 0 chr11 19895744 19895844 -130887709 - MER5A DNA MER1_type -77 112 9 22 0 0 0 chr11 19896323 19896345 -130887208 + AT_rich Low_complexity Low_complexity 1 22 0 1116 62 0 0 chr11 19896351 19896480 -130887073 - AluSq/x SINE Alu -183 129 1 1256 128 0 0 chr11 19896483 19896662 -130886891 + AluSg/x SINE Alu 127 305 -7 1640 176 7 23 chr11 19897217 19897523 -130886030 + AluJo SINE Alu 1 301 -11 213 39 0 0 chr11 19897632 19897658 -130885895 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 267 314 18 136 chr11 19897663 19898052 -130885501 - L2 LINE L2 -18 3254 2912 183 286 89 0 chr11 19898091 19898147 -130885406 - MIR3 SINE MIR -9 199 139 198 0 0 0 chr11 19898513 19898535 -130885018 + (TG)n Simple_repeat Simple_repeat 1 22 0 2151 101 14 0 chr11 19898808 19899109 -130884444 + AluSc SINE Alu 1 305 0 385 296 68 12 chr11 19900025 19900187 -130883366 + MIR SINE MIR 13 183 -79 507 33 0 0 chr11 19900356 19900417 -130883136 + (TCCC)n Simple_repeat Simple_repeat 1 61 0 884 168 0 11 chr11 19900417 19900596 -130882957 + CT-rich Low_complexity Low_complexity 3 179 0 499 294 31 25 chr11 19900935 19901095 -130882458 - MIR SINE MIR -71 191 31 550 239 97 23 chr11 19901122 19901298 -130882255 - MIR SINE MIR -54 208 20 270 327 44 6 chr11 19901390 19901549 -130882004 + L3 LINE CR1 1306 1470 -107 309 242 135 94 chr11 19901726 19901970 -130881583 + MIR SINE MIR 6 259 -3 328 233 23 23 chr11 19902578 19902664 -130880889 + MIR SINE MIR 59 144 -118 208 291 55 27 chr11 19903195 19903305 -130880248 - MIR SINE MIR -50 212 100 314 183 14 0 chr11 19903464 19903535 -130880018 + CT-rich Low_complexity Low_complexity 2 73 0 214 300 25 0 chr11 19905797 19905877 -130877676 - MIR3 SINE MIR -9 199 118 * 215 167 0 0 chr11 19905847 19905883 -130877670 - MIR SINE MIR -116 146 111 231 222 0 19 chr11 19906136 19906190 -130877363 - MIR3 SINE MIR -1 207 155 1751 151 30 0 chr11 19906200 19906493 -130877060 - AluJb SINE Alu 0 310 10 3159 20 3 8 chr11 19906614 19907005 -130876548 - L1PA4 LINE L1 -743 5403 5015 6165 32 7 1 chr11 19907005 19907763 -130875790 + L1PA4 LINE L1 5411 6177 0 1413 83 9 46 chr11 19907777 19907994 -130875559 + L1PA8A LINE L1 5922 6130 -1 1371 164 0 0 chr11 19908250 19908458 -130875095 - AluSq SINE Alu -25 288 81 2053 91 0 0 chr11 19908576 19908839 -130874714 + AluSc SINE Alu 38 300 -9 250 252 55 110 chr11 19909978 19910039 -130873514 - MIR SINE MIR -77 185 133 2553 52 0 3 chr11 19910039 19910348 -130873205 + AluY SINE Alu 1 308 -3 250 252 55 110 chr11 19910348 19910413 -130873140 - MIR SINE MIR -129 133 66 984 275 50 45 chr11 19910795 19911217 -130872336 + L2 LINE L2 2882 3305 -8 532 138 23 0 chr11 19913086 19913173 -130870380 - L1MD3 LINE L1 -14 7981 7893 351 245 0 32 chr11 19913438 19913488 -130870065 - MIR SINE MIR -58 150 103 583 113 0 0 chr11 19913488 19913568 -130869985 - MADE1 DNA Mariner 0 80 1 351 245 0 32 chr11 19913568 19913611 -130869942 - MIR SINE MIR -105 103 60 27 29 0 0 chr11 19915120 19915154 -130868399 + AT_rich Low_complexity Low_complexity 1 34 0 195 42 0 0 chr11 19915670 19915694 -130867859 + (CCG)n Simple_repeat Simple_repeat 2 25 0 25 83 0 0 chr11 19916001 19916061 -130867492 + GC_rich Low_complexity Low_complexity 1 60 0 183 80 0 0 chr11 19916163 19916188 -130867365 + (T)n Simple_repeat Simple_repeat 1 25 0 334 226 151 19 chr11 19917967 19918073 -130865480 - MIR SINE MIR -63 145 26 2416 102 0 0 chr11 19919435 19919739 -130863814 - AluSg SINE Alu -6 304 1 2178 116 7 0 chr11 19920002 19920303 -130863250 + AluSx SINE Alu 1 303 -9 229 255 47 57 chr11 19920304 19920410 -130863143 - L3 LINE CR1 -57 1520 1416 283 270 43 17 chr11 19920482 19920597 -130862956 + L2 LINE L2 3154 3271 -1 187 323 15 0 chr11 19920640 19920705 -130862848 + L2 LINE L2 3186 3251 -21 432 263 15 23 chr11 19920786 19920919 -130862634 - L2 LINE L2 0 3313 3182 27 0 0 0 chr11 19921005 19921032 -130862521 + AT_rich Low_complexity Low_complexity 1 27 0 2440 87 0 0 chr11 19921793 19922091 -130861462 + AluY SINE Alu 1 298 -13 11571 184 23 10 chr11 19922208 19925653 -130857900 + L1PA16 LINE L1 2680 6163 -3 21 36 0 0 chr11 19925671 19925699 -130857854 + AT_rich Low_complexity Low_complexity 1 28 0 976 191 0 0 chr11 19925796 19925964 -130857589 - FRAM SINE Alu -8 168 1 657 246 55 35 chr11 19926040 19926296 -130857257 + MIR SINE MIR 1 261 -1 198 0 0 0 chr11 19926576 19926598 -130856955 + (T)n Simple_repeat Simple_repeat 1 22 0 431 257 9 9 chr11 19926851 19926964 -130856589 + MIR SINE MIR 33 145 -63 324 291 94 0 chr11 19927134 19927251 -130856302 + MIR3 SINE MIR 77 204 -4 188 182 0 23 chr11 19927893 19927937 -130855616 + L2 LINE L2 1955 1997 -1317 355 238 149 18 chr11 19928217 19928385 -130855168 - MIR SINE MIR -50 212 23 2332 132 8 35 chr11 19928853 19929224 -130854329 - THE1B LTR MaLR -3 361 1 578 268 109 14 chr11 19929639 19929859 -130853694 - MIR SINE MIR 0 262 22 277 203 0 17 chr11 19931700 19931759 -130851794 - MLT1J2 LTR MaLR -366 84 27 236 326 11 11 chr11 19931868 19931957 -130851596 + L2 LINE L2 3184 3272 0 382 288 66 60 chr11 19931999 19932301 -130851252 + L3 LINE CR1 716 1019 -558 819 196 0 0 chr11 19932345 19932483 -130851070 - FAM SINE Alu -22 163 26 2409 93 3 0 chr11 19932538 19932839 -130850714 - AluSp SINE Alu -11 302 1 265 250 155 0 chr11 19932957 19933041 -130850512 - MIR SINE MIR -95 113 17 1549 140 121 34 chr11 19933330 19933594 -130849959 - AluJo SINE Alu -25 287 1 703 132 8 8 chr11 19933941 19934070 -130849483 + (TCTA)n Simple_repeat Simple_repeat 4 132 0 457 240 25 8 chr11 19934747 19934868 -130848685 - FLAM_C SINE Alu -20 123 1 227 245 0 0 chr11 19935037 19935090 -130848463 + MIR3 SINE MIR 151 203 -5 224 271 173 38 chr11 19935548 19935681 -130847872 - MIR3 SINE MIR -32 176 26 935 289 70 13 chr11 19935998 19936545 -130847008 - MLT2E LTR ERVL 0 628 1 1511 87 0 0 chr11 19936955 19937150 -130846403 - MER107 DNA MER1_type -2 195 1 314 288 12 12 chr11 19937506 19937669 -130845884 + (TA)n Simple_repeat Simple_repeat 2 164 0 2203 195 81 53 chr11 19939445 19940015 -130843538 - MLT1E LTR MaLR 0 593 8 203 196 0 20 chr11 19940731 19940782 -130842771 + MIR SINE MIR 76 125 -137 22 35 0 0 chr11 19941468 19941497 -130842056 + AT_rich Low_complexity Low_complexity 1 29 0 234 191 0 0 chr11 19941834 19941881 -130841672 + (TATG)n Simple_repeat Simple_repeat 1 47 0 487 269 35 0 chr11 19943679 19943824 -130839729 + MER103 DNA DNA 8 157 -9 1074 209 23 9 chr11 19943899 19944119 -130839434 + MER58A DNA MER1_type 2 224 0 1840 174 10 0 chr11 19945172 19945466 -130838087 + AluJb SINE Alu 1 297 -15 384 274 38 84 chr11 19948295 19948361 -130835192 - MIR SINE MIR -15 247 179 593 276 17 0 chr11 19948361 19948535 -130835018 + MER104 DNA MER2_type 4 180 0 384 274 38 84 chr11 19948535 19948705 -130834848 - MIR SINE MIR -83 179 22 381 286 71 26 chr11 19948749 19948903 -130834650 - MIR SINE MIR -82 180 20 364 272 39 73 chr11 19949272 19949478 -130834075 + L1MB5 LINE L1 5727 5925 -249 * 1762 70 4 4 chr11 19949306 19949535 -130834018 + L1PA10 LINE L1 5754 5982 -186 21 57 0 0 chr11 19949895 19949930 -130833623 + AT_rich Low_complexity Low_complexity 1 35 0 698 97 0 19 chr11 19950998 19951101 -130832452 - AluSq/x SINE Alu -173 139 39 353 67 0 0 chr11 19951145 19951190 -130832363 + (TG)n Simple_repeat Simple_repeat 2 46 0 2101 150 62 0 chr11 19951258 19951597 -130831956 - MLT1B LTR MaLR -24 366 7 436 295 134 49 chr11 19951603 19952355 -130831198 - HAL1 LINE L1 -872 1635 820 987 218 15 0 chr11 19952886 19953092 -130830461 - MER3 DNA MER1_type 0 209 1 277 282 0 0 chr11 19953442 19953513 -130830040 - MIR SINE MIR -67 195 125 336 276 155 0 chr11 19954527 19954643 -130828910 - MIR SINE MIR -108 154 21 517 348 53 42 chr11 19955101 19955704 -130827849 + L2 LINE L2 2603 3221 -51 383 292 67 34 chr11 19955967 19956117 -130827436 + MIR3 SINE MIR 25 183 -25 2456 38 31 3 chr11 19956117 19956409 -130827144 - AluY SINE Alu -11 300 1 383 292 67 34 chr11 19956409 19956436 -130827117 + MIR3 SINE MIR 183 208 0 2294 100 3 0 chr11 19957048 19957358 -130826195 + AluSp SINE Alu 1 311 -2 6601 150 8 12 chr11 19957359 19958524 -130825029 - L1MC1 LINE L1 -7 6326 5171 234 306 74 93 chr11 19959587 19959803 -130823750 + L3 LINE CR1 1169 1380 -197 1659 246 18 15 chr11 19960115 19960509 -130823044 - L1ME1 LINE L1 -53 6113 5719 856 194 95 47 chr11 19960492 19960543 -130823010 + L1MCa LINE L1 20 67 -6359 * 2111 105 13 13 chr11 19960543 19960847 -130822706 + AluY SINE Alu 1 304 -7 856 194 95 47 chr11 19960847 19961027 -130822526 + L1MCa LINE L1 67 262 -6164 3185 168 20 2 chr11 19961028 19961630 -130821923 + L1MCa LINE L1 783 1395 -5031 1716 204 48 70 chr11 19961638 19961993 -130821560 - L1ME1 LINE L1 -423 5743 5401 2176 111 10 0 chr11 19961993 19962290 -130821263 - AluSc SINE Alu -9 300 1 1716 204 48 70 chr11 19962290 19962435 -130821118 - L1ME1 LINE L1 -765 5401 5254 228 244 24 37 chr11 19962477 19962559 -130820994 - L1MDb LINE L1 -5515 894 814 1721 189 3 10 chr11 19962830 19963121 -130820432 - AluJb SINE Alu -23 289 1 195 250 192 29 chr11 19963122 19963226 -130820327 + MER5A DNA MER1_type 47 167 -22 1099 219 26 87 chr11 19963371 19963750 -130819803 - L1ME3 LINE L1 -31 6131 5776 196 167 0 153 chr11 19964033 19964105 -130819448 + MIR SINE MIR 82 142 -120 771 176 72 0 chr11 19964144 19964297 -130819256 + MER53 DNA DNA 22 185 -4 209 323 21 0 chr11 19964565 19964658 -130818895 + MIR SINE MIR 43 137 -125 196 265 106 69 chr11 19964718 19964907 -130818646 - L2 LINE L2 -91 3222 3027 228 224 75 0 chr11 19965189 19965256 -130818297 + MER5C DNA MER1_type 43 114 -210 241 176 0 68 chr11 19965317 19965391 -130818162 + MER5C DNA MER1_type 250 318 -6 366 337 62 16 chr11 19965401 19965594 -130817959 + MIR SINE MIR 29 230 -32 756 229 212 31 chr11 19965638 19966057 -130817496 - L2 LINE L2 0 3313 2819 3124 208 36 11 chr11 19966422 19967058 -130816495 - MER82 DNA MER2_type 0 653 2 2029 139 10 3 chr11 19967213 19967508 -130816045 - AluJb SINE Alu -15 297 1 814 232 31 35 chr11 19967850 19968104 -130815449 + MIR SINE MIR 10 262 0 283 258 125 33 chr11 19968213 19968333 -130815220 + MIR3 SINE MIR 2 132 -76 328 316 68 0 chr11 19968369 19968502 -130815051 - MIR SINE MIR -57 205 64 2016 93 3 60 chr11 19968720 19969021 -130814532 - AluSg SINE Alu -14 296 13 2121 125 98 47 chr11 19969733 19970140 -130813413 - MSTA LTR MaLR 0 428 1 186 43 0 0 chr11 19970209 19970232 -130813321 + (TG)n Simple_repeat Simple_repeat 1 23 0 321 331 63 7 chr11 19970440 19970582 -130812971 + L2 LINE L2 3123 3272 0 236 250 0 89 chr11 19971283 19971395 -130812158 - MIR SINE MIR -71 191 90 513 227 147 1 chr11 19971645 19971824 -130811729 - L1ME1 LINE L1 0 6164 5974 18287 91 9 0 chr11 19972678 19975995 -130807558 + L1PA8 LINE L1 2839 6172 0 2241 107 7 0 chr11 19976221 19976519 -130807034 + AluSx SINE Alu 4 303 -9 318 195 142 0 chr11 19977996 19978109 -130805444 - MER113 DNA MER1_type? -311 210 82 620 214 184 5 chr11 19978114 19978315 -130805238 + MIR SINE MIR 2 238 -24 790 231 232 16 chr11 19979838 19980251 -130803302 + L2 LINE L2 2776 3285 -28 186 43 0 0 chr11 19980645 19980668 -130802885 + (CTGGGG)n Simple_repeat Simple_repeat 2 24 0 2247 131 33 25 chr11 19980713 19981072 -130802481 + THE1B LTR MaLR 1 362 -2 2495 132 45 26 chr11 19981340 19981764 -130801789 - MSTB1 LTR MaLR 0 432 1 250 269 15 0 chr11 19981848 19981915 -130801638 + L2 LINE L2 3238 3305 -8 256 247 26 26 chr11 19982413 19982490 -130801063 + CT-rich Low_complexity Low_complexity 4 80 0 243 88 0 0 chr11 19982929 19982963 -130800590 + (T)n Simple_repeat Simple_repeat 1 34 0 279 0 0 0 chr11 19983223 19983254 -130800299 + (CAG)n Simple_repeat Simple_repeat 3 33 0 1108 86 43 21 chr11 19983694 19983880 -130799673 + L1MA7 LINE L1 6102 6291 0 262 277 139 0 chr11 19983955 19984056 -130799497 - L2 LINE L2 -1 3312 3198 1613 225 71 46 chr11 19984145 19984596 -130798957 + MLT1F1 LTR MaLR 74 539 -28 1612 189 51 43 chr11 19984596 19984806 -130798747 - MLT1A2 LTR MaLR 0 374 158 2110 126 0 13 chr11 19984806 19985116 -130798437 - AluSx SINE Alu -6 306 1 1612 189 51 43 chr11 19985116 19985276 -130798277 - MLT1A2 LTR MaLR -216 158 1 1613 225 71 46 chr11 19985276 19985304 -130798249 + MLT1F1 LTR MaLR 539 565 -2 419 321 104 8 chr11 19985440 19985680 -130797873 - L3 LINE CR1 -12 1565 1303 189 0 0 0 chr11 19986665 19986686 -130796867 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 2455 98 0 0 chr11 19987347 19987654 -130795899 + AluSx SINE Alu 1 307 -5 297 220 136 52 chr11 19987669 19987860 -130795693 + MIR SINE MIR 56 262 0 419 284 84 21 chr11 19988501 19988691 -130794862 - MIR SINE MIR -33 229 28 1413 245 139 44 chr11 19988703 19989276 -130794277 - MLT1G LTR MaLR 0 590 1 2678 24 0 7 chr11 19989386 19989684 -130793869 + AluY SINE Alu 1 296 -15 1283 89 0 11 chr11 19990419 19990598 -130792955 + L1PA11 LINE L1 5995 6171 -3 222 37 0 0 chr11 19990640 19990667 -130792886 + (TC)n Simple_repeat Simple_repeat 2 28 0 211 189 0 0 chr11 19990668 19990705 -130792848 + (TG)n Simple_repeat Simple_repeat 2 38 0 295 276 92 11 chr11 19990859 19991033 -130792520 - L1ME LINE L1 -323 5798 5611 1926 149 21 0 chr11 19991078 19991366 -130792187 - AluJb SINE Alu -18 294 1 597 297 34 22 chr11 19991452 19991703 -130791850 - MIR SINE MIR 0 262 2 1000 217 45 20 chr11 19992447 19992691 -130790862 - AluJo SINE Alu -8 304 55 510 301 95 35 chr11 19992714 19993113 -130790440 + L2 LINE L2 2885 3307 -6 1198 190 24 9 chr11 19993206 19993417 -130790136 + MER58A DNA MER1_type 1 214 -10 25 0 0 0 chr11 19993778 19993803 -130789750 + AT_rich Low_complexity Low_complexity 1 25 0 341 237 47 91 chr11 19994315 19994568 -130788985 - L1ME4a LINE L1 -28 6093 5852 598 263 7 7 chr11 19994584 19994736 -130788817 + MIR SINE MIR 2 153 -109 215 317 8 25 chr11 19994811 19994931 -130788622 + MIR SINE MIR 145 262 0 4832 135 14 37 chr11 19995086 19996307 -130787246 - L1PA15 LINE L1 -3 6162 4914 1950 124 88 28 chr11 19996307 19996661 -130786892 - THE1C LTR MaLR 0 375 1 4832 135 14 37 chr11 19996661 19996931 -130786622 - L1PA15 LINE L1 -1251 4914 4642 1630 179 3 50 chr11 19996931 19997250 -130786303 - AluJo SINE Alu -8 304 1 4832 135 14 37 chr11 19997250 19997275 -130786278 - L1PA15 LINE L1 -1523 4642 4618 393 306 92 5 chr11 19997468 19997664 -130785889 + MIR SINE MIR 50 262 0 1139 230 325 9 chr11 19997807 19998389 -130785164 + LTR50 LTR ERVL 16 781 -14 236 163 41 0 chr11 19999045 19999094 -130784459 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 330 123 0 0 chr11 19999095 19999152 -130784401 + (TC)n Simple_repeat Simple_repeat 2 58 0 300 70 0 0 chr11 19999152 19999195 -130784358 + (CA)n Simple_repeat Simple_repeat 1 43 0 2131 207 37 25 chr11 19999599 20000110 -130783443 - L1MD3 LINE L1 0 7995 7479 340 248 26 26 chr11 20000275 20000388 -130783165 + MIR SINE MIR 20 132 -130 936 167 83 86 chr11 20000650 20000945 -130782608 - L1ME1 LINE L1 0 6184 5881 550 192 34 20 chr11 20000947 20001093 -130782460 - L1MA10 LINE L1 -7 6327 6180 553 253 116 27 chr11 20001433 20001658 -130781895 + MIR SINE MIR 7 251 -11 1631 218 70 14 chr11 20002132 20002545 -130781008 - MER63B DNA MER1_type 0 436 1 864 250 82 55 chr11 20003251 20003364 -130780189 + L1ME2 LINE L1 5456 5565 -599 15565 119 30 9 chr11 20003364 20005731 -130777822 - Tigger1 DNA MER2_type 0 2418 3 864 250 82 55 chr11 20005731 20006201 -130777352 + L1ME2 LINE L1 5565 6139 -25 2826 127 12 23 chr11 20006201 20006628 -130776925 - MSTB LTR MaLR 0 426 5 864 250 82 55 chr11 20006628 20006654 -130776899 + L1ME2 LINE L1 6139 6163 -1 436 212 0 0 chr11 20007046 20007131 -130776422 - MLT1D LTR MaLR -17 488 404 786 229 20 35 chr11 20007141 20007342 -130776211 - MLT1D LTR MaLR -264 241 44 2484 67 0 0 chr11 20007661 20007960 -130775593 - AluY SINE Alu -12 299 1 1630 206 46 3 chr11 20008194 20008520 -130775033 - MER58B DNA MER1_type 0 341 2 322 333 80 9 chr11 20008562 20008775 -130774778 - L3 LINE CR1 -3 1574 1347 507 225 0 0 chr11 20009844 20009933 -130773620 + MER81 DNA DNA 1 89 -25 635 215 0 51 chr11 20011285 20011443 -130772110 - MIR SINE MIR -40 222 73 1335 191 148 13 chr11 20012558 20012861 -130770692 - MER2 DNA MER2_type 0 344 1 554 227 0 74 chr11 20012994 20013157 -130770396 + MER117 DNA MER1_type 20 170 -27 342 288 123 5 chr11 20013757 20013956 -130769597 - MIR SINE MIR -33 229 1 834 134 67 34 chr11 20014739 20014888 -130768665 + FRAM SINE Alu 1 154 -12 396 296 81 17 chr11 20014931 20015103 -130768450 + L2 LINE L2 3094 3276 -37 344 232 11 0 chr11 20015150 20015245 -130768308 - L1ME4a LINE L1 -240 5881 5786 2338 4 0 0 chr11 20015803 20016050 -130767503 - AluYa5 SINE Alu -22 289 43 304 309 105 19 chr11 20016169 20016331 -130767222 + L2 LINE L2 2910 3085 -187 375 199 321 8 chr11 20016437 20016568 -130766985 + MER5B DNA MER1_type 3 174 -4 361 188 29 0 chr11 20017457 20017526 -130766027 - MIR SINE MIR -56 152 82 498 90 0 0 chr11 20017875 20017942 -130765611 - LTR29 LTR ERV1 -66 556 490 25 31 0 0 chr11 20018032 20018064 -130765489 + AT_rich Low_complexity Low_complexity 1 32 0 498 266 112 19 chr11 20019253 20019467 -130764086 + MIR SINE MIR 17 250 -12 234 250 95 12 chr11 20020546 20020630 -130762923 - L2 LINE L2 -38 3234 3144 2512 124 30 44 chr11 20020754 20021188 -130762365 + MSTA LTR MaLR 1 428 0 458 324 81 34 chr11 20021863 20022514 -130761039 + HAL1 LINE L1 1083 1764 -743 982 66 0 0 chr11 20023461 20023582 -130759971 - L1MA1 LINE L1 -7 6295 6175 935 312 32 12 chr11 20024260 20024766 -130758787 + L1M4 LINE L1 3713 4228 -1918 379 296 45 28 chr11 20024942 20025229 -130758324 + L1M4 LINE L1 5039 5330 -816 284 152 167 0 chr11 20025325 20025391 -130758162 - MLT1J1 LTR MaLR -125 321 245 480 274 153 14 chr11 20025537 20025820 -130757733 - L2 LINE L2 -251 3062 2748 7475 177 26 3 chr11 20025854 20028054 -130755499 + L1PA13 LINE L1 3924 6163 0 312 247 14 0 chr11 20028576 20028649 -130754904 + L2 LINE L2 3240 3313 0 280 258 15 0 chr11 20028959 20029025 -130754528 + L2 LINE L2 2989 3055 -217 591 265 66 20 chr11 20029136 20029332 -130754221 + MIR SINE MIR 2 206 -56 313 353 83 6 chr11 20029332 20029488 -130754065 + L2 LINE L2 3104 3271 -1 705 210 61 17 chr11 20029792 20029973 -130753580 - MER5A DNA MER1_type 0 189 1 211 238 32 0 chr11 20030039 20030102 -130753451 - L2 LINE L2 -231 3041 2977 548 321 23 14 chr11 20030282 20030493 -130753060 + MIR SINE MIR 11 214 -48 200 270 16 16 chr11 20030942 20031005 -130752548 - L2 LINE L2 -52 3220 3158 730 247 36 18 chr11 20031487 20031710 -130751843 - L2 LINE L2 -233 3080 2854 567 271 102 25 chr11 20033533 20033769 -130749784 - MIR SINE MIR -8 254 1 1752 178 17 3 chr11 20033792 20033967 -130749586 - AluJo SINE Alu -15 297 115 468 0 0 0 chr11 20033967 20034019 -130749534 + (TG)n Simple_repeat Simple_repeat 1 52 0 1752 178 17 3 chr11 20034019 20034135 -130749418 - AluJo SINE Alu -197 115 2 189 0 0 0 chr11 20034838 20034859 -130748694 + (TA)n Simple_repeat Simple_repeat 1 21 0 2415 90 0 0 chr11 20034859 20035150 -130748403 - AluY SINE Alu -15 296 3 488 237 155 104 chr11 20035481 20035835 -130747718 - LTR33A LTR ERVL -3 520 149 27 49 0 0 chr11 20036691 20036732 -130746821 + AT_rich Low_complexity Low_complexity 1 41 0 286 240 120 30 chr11 20036830 20036930 -130746623 + L2 LINE L2 3200 3308 -5 355 302 67 16 chr11 20036955 20037210 -130746343 - L1ME4a LINE L1 -173 5948 5681 411 205 51 60 chr11 20037314 20037431 -130746122 + L2 LINE L2 3190 3305 -8 189 0 0 0 chr11 20037830 20037851 -130745702 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 393 136 0 0 chr11 20038019 20038085 -130745468 + (TG)n Simple_repeat Simple_repeat 1 66 0 263 305 21 11 chr11 20038678 20038773 -130744780 - MIR SINE MIR -128 134 39 993 244 18 0 chr11 20038906 20039131 -130744422 + MIR SINE MIR 11 239 -23 732 299 147 20 chr11 20039460 20040092 -130743461 + L2 LINE L2 2540 3305 -8 208 210 0 65 chr11 20040659 20040721 -130742832 - MIR SINE MIR -65 143 86 213 281 73 21 chr11 20040953 20041049 -130742504 + L2 LINE L2 3134 3234 -38 483 201 115 63 chr11 20041193 20041367 -130742186 + MIR SINE MIR 67 249 -13 226 163 41 0 chr11 20041936 20041985 -130741568 + L2 LINE L2 3263 3313 0 972 313 98 23 chr11 20042419 20043190 -130740363 + L2 LINE L2 2472 3313 0 365 176 0 12 chr11 20044366 20044451 -130739102 + GA-rich Low_complexity Low_complexity 1 84 0 349 138 35 0 chr11 20044787 20044845 -130738708 - MLT2B1 LTR ERVL 0 520 461 * 488 344 14 188 chr11 20044841 20045117 -130738436 - MLT2D LTR ERVL -186 228 1 410 279 142 6 chr11 20045181 20045364 -130738189 - MIR SINE MIR -52 210 3 517 284 83 32 chr11 20046413 20046691 -130736862 + L3 LINE CR1 1266 1557 -20 300 297 7 14 chr11 20047980 20048125 -130735428 + (TG)n Simple_repeat Simple_repeat 1 144 0 469 268 32 0 chr11 20050208 20050331 -130733222 + MIR SINE MIR 8 134 -128 410 221 117 3 chr11 20050533 20050662 -130732891 - MIR SINE MIR -60 148 22 201 74 0 0 chr11 20051097 20051124 -130732429 + (TCC)n Simple_repeat Simple_repeat 1 27 0 282 29 0 0 chr11 20051863 20051898 -130731655 + (ATG)n Simple_repeat Simple_repeat 1 35 0 270 0 0 0 chr11 20053658 20053688 -130729865 + (A)n Simple_repeat Simple_repeat 1 30 0 267 31 0 0 chr11 20053833 20053865 -130729688 + (TG)n Simple_repeat Simple_repeat 1 32 0 22 56 0 0 chr11 20053905 20053941 -130729612 + AT_rich Low_complexity Low_complexity 1 36 0 458 347 76 13 chr11 20055281 20055506 -130728047 + MIR SINE MIR 14 252 -10 322 328 44 10 chr11 20055744 20055948 -130727605 - L1ME4a LINE L1 -188 5933 5723 476 307 79 33 chr11 20055985 20056101 -130727452 - L2 LINE L2 0 3313 3204 1086 186 45 5 chr11 20056101 20056300 -130727253 + MER3 DNA MER1_type 1 207 -2 476 307 79 33 chr11 20056300 20056424 -130727129 - L2 LINE L2 -109 3204 3062 297 260 7 93 chr11 20056447 20056597 -130726956 - L1ME3 LINE L1 -2 6160 6024 223 191 0 0 chr11 20056616 20056658 -130726895 - L2 LINE L2 -261 3052 3011 242 343 198 8 chr11 20057333 20057581 -130725972 + L2 LINE L2 2374 2668 -646 204 40 0 0 chr11 20058209 20058234 -130725319 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 225 314 179 39 chr11 20058239 20058446 -130725107 - L2 LINE L2 -20 3252 3017 300 206 118 0 chr11 20058555 20058623 -130724930 + MLT1A2 LTR MaLR 1 76 -298 238 280 147 20 chr11 20059234 20059384 -130724169 + MIR SINE MIR 93 261 -1 340 264 0 22 chr11 20060833 20060924 -130722629 + L2 LINE L2 3225 3313 0 2127 183 38 25 chr11 20061930 20062373 -130721180 + MER31B LTR ERV1 1 449 -17 223 234 43 0 chr11 20062683 20062730 -130720823 - L2 LINE L2 -90 3182 3134 353 327 57 61 chr11 20062819 20063082 -130720471 + MIR SINE MIR 1 262 0 192 231 88 88 chr11 20063188 20063279 -130720274 + MIR SINE MIR 41 131 -77 321 250 116 58 chr11 20113859 20114031 -130669522 + L2 LINE L2 2868 3049 -223 221 320 26 13 chr11 20114200 20114311 -130669242 + MIR SINE MIR 35 147 -62 207 261 130 0 chr11 20114395 20114464 -130669089 - MIR SINE MIR 0 262 185 474 209 32 110 chr11 20114464 20114809 -130668744 - L1MD2 LINE L1 -12 6347 5971 15984 47 4 1 chr11 20114910 20116862 -130666691 - L1P LINE L1 -786 5360 3403 202 216 0 0 chr11 20116962 20116999 -130666554 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 205 273 141 25 chr11 20117220 20117341 -130666212 - MIR SINE MIR -12 250 116 288 0 0 0 chr11 20117768 20117800 -130665753 + (TG)n Simple_repeat Simple_repeat 1 32 0 406 294 28 56 chr11 20118305 20118519 -130665034 + MIR SINE MIR 7 214 -48 528 262 70 47 chr11 20118920 20119218 -130664335 - L2 LINE L2 -49 3264 2960 347 239 299 0 chr11 20119234 20119445 -130664108 + L2 LINE L2 2761 3025 -288 22800 78 4 4 chr11 20119558 20122528 -130661025 - L1P LINE L1 -3165 2981 11 6480 121 44 3 chr11 20122567 20123619 -130659934 - L1MA5A LINE L1 -6 6291 5202 404 247 5 102 chr11 20123848 20124034 -130659519 + MIR SINE MIR 86 253 -9 365 286 106 70 chr11 20124189 20124234 -130659319 + MLT1H LTR MaLR 1 43 -506 327 96 0 0 chr11 20124234 20124286 -130659267 + (CA)n Simple_repeat Simple_repeat 2 53 0 365 286 106 70 chr11 20124286 20124702 -130658851 + MLT1H LTR MaLR 43 549 0 183 77 0 0 chr11 20125062 20125088 -130658465 - MIR SINE MIR -172 90 65 2185 195 32 36 chr11 20125104 20125606 -130657947 - MLT1D LTR MaLR 0 505 6 961 242 0 0 chr11 20126426 20126637 -130656916 + MIR SINE MIR 13 223 -39 239 316 128 8 chr11 20126755 20126872 -130656681 + MIR SINE MIR 16 146 -62 587 170 38 9 chr11 20126879 20126985 -130656568 - MLT1H1 LTR MaLR 0 555 447 539 329 112 8 chr11 20127023 20127272 -130656281 - MLT1H1 LTR MaLR -257 298 24 2485 135 17 6 chr11 20127354 20127383 -130656170 + L1MC/D LINE L1 5129 5156 -1177 4312 148 16 3 chr11 20127383 20128086 -130655467 - L1MC1 LINE L1 0 6333 5622 2485 135 17 6 chr11 20128086 20128552 -130655001 + L1MC1 LINE L1 5156 5625 -708 355 276 0 10 chr11 20128705 20128803 -130654750 + L3 LINE CR1 1390 1486 -91 596 242 42 33 chr11 20129050 20129265 -130654288 - MIR SINE MIR 0 262 46 482 227 120 13 chr11 20130704 20130854 -130652699 + MIR SINE MIR 81 246 -16 1025 203 0 0 chr11 20131072 20131249 -130652304 - MER45A DNA AcHobo 0 178 2 306 258 200 0 chr11 20131765 20131920 -130651633 + MIR SINE MIR 46 231 -31 811 227 114 14 chr11 20131999 20132219 -130651334 - MIR SINE MIR -12 250 9 289 298 11 99 chr11 20132680 20132871 -130650682 + L2 LINE L2 2886 3059 -213 200 200 243 14 chr11 20133000 20133070 -130650483 + L2 LINE L2 3227 3312 -1 207 241 13 89 chr11 20133398 20133477 -130650076 + MIR3 SINE MIR 112 184 -24 4129 164 12 3 chr11 20133621 20134358 -130649195 - L1 LINE L1 -1001 5145 4402 476 315 61 0 chr11 20134364 20134529 -130649024 + MIR SINE MIR 18 192 -70 2245 112 0 3 chr11 20134686 20134980 -130648573 + AluSx SINE Alu 1 293 -19 188 250 19 0 chr11 20135303 20135355 -130648198 + MIR3 SINE MIR 109 161 -47 313 303 42 8 chr11 20135378 20135497 -130648056 + MIR SINE MIR 19 141 -67 216 97 0 0 chr11 20135498 20135529 -130648024 + (GAA)n Simple_repeat Simple_repeat 2 32 0 186 103 0 0 chr11 20137060 20137089 -130646464 + (CA)n Simple_repeat Simple_repeat 1 29 0 333 0 0 0 chr11 20137123 20137160 -130646393 + (CA)n Simple_repeat Simple_repeat 2 38 0 292 375 0 8 chr11 20137870 20137990 -130645563 + MIR3 SINE MIR 37 155 -53 1923 143 39 0 chr11 20138185 20138465 -130645088 + AluJb SINE Alu 1 291 -21 306 164 0 0 chr11 20138503 20138558 -130644995 + A-rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr11 20138597 20138625 -130644928 + AT_rich Low_complexity Low_complexity 1 28 0 2506 56 0 0 chr11 20138689 20138992 -130644561 - L1PA3 LINE L1 -3 6152 5850 238 287 23 11 chr11 20139850 20139937 -130643616 + MIR SINE MIR 95 182 -80 445 212 188 6 chr11 20140408 20140573 -130642980 - MIR SINE MIR -9 253 59 565 244 93 26 chr11 20141401 20141594 -130641959 + MIR SINE MIR 46 251 -11 1578 95 0 0 chr11 20141859 20142070 -130641483 + L1PA14 LINE L1 5934 6144 -17 457 289 65 91 chr11 20142155 20142508 -130641045 - L2 LINE L2 0 3272 2929 370 196 54 0 chr11 20142529 20142621 -130640932 - MLT1J1 LTR MaLR 0 446 350 299 190 17 0 chr11 20142691 20142749 -130640804 - MLT1J2 LTR MaLR -384 66 8 443 375 20 4 chr11 20142752 20143000 -130640553 - L2 LINE L2 -458 2856 2605 1700 180 40 78 chr11 20143000 20143449 -130640104 - MSTB1 LTR MaLR 0 432 1 2324 43 71 0 chr11 20144070 20144350 -130639203 - AluY SINE Alu -11 300 1 2292 152 78 2 chr11 20145051 20145447 -130638106 - MSTB LTR MaLR 0 426 1 207 268 183 0 chr11 20145548 20145630 -130637923 - MIR SINE MIR -12 250 154 428 277 5 79 chr11 20146078 20146280 -130637273 - MIR SINE MIR 0 262 76 2072 109 0 0 chr11 20146328 20146604 -130636949 + AluSg SINE Alu 35 310 0 952 169 27 0 chr11 20146619 20146767 -130636786 + MER68 LTR ERV1 1 152 -410 524 333 153 18 chr11 20147134 20147579 -130635974 + L3 LINE CR1 1072 1576 -1 300 231 15 0 chr11 20148031 20148096 -130635457 - MLT1J1 LTR MaLR 0 446 381 * 419 250 130 39 chr11 20148095 20148303 -130635250 - MLT1J2 LTR MaLR -215 235 9 6644 150 36 23 chr11 20149105 20151234 -130632319 - L1MA7 LINE L1 0 6291 4140 1515 258 77 17 chr11 20151791 20152325 -130631228 - HsTC2 DNA Tc2 -2 1896 1331 320 284 113 21 chr11 20152349 20152490 -130631063 - MIR SINE MIR -50 212 59 1758 230 49 63 chr11 20152622 20153257 -130630296 - MER21B LTR ERV1 -48 815 98 474 206 0 22 chr11 20153310 20153402 -130630151 - MER21B LTR ERV1 -773 90 1 823 78 17 9 chr11 20153427 20153542 -130630011 + L1PA13 LINE L1 5972 6087 -76 364 214 95 0 chr11 20153542 20153626 -130629927 + MLT1D LTR MaLR 115 206 -299 396 36 91 0 chr11 20153631 20153686 -130629867 + L1PA13 LINE L1 6101 6160 -3 210 275 209 0 chr11 20154269 20154360 -130629193 - L2 LINE L2 -27 3245 3136 236 307 0 0 chr11 20154473 20154548 -130629005 - L2 LINE L2 -220 3052 2978 365 313 182 24 chr11 20155284 20155575 -130627978 - L2 LINE L2 -339 2975 2639 375 23 0 0 chr11 20155575 20155619 -130627934 + (CA)n Simple_repeat Simple_repeat 2 45 0 266 340 9 19 chr11 20156816 20156922 -130626631 + MIR SINE MIR 41 145 -63 518 244 66 70 chr11 20157834 20158047 -130625506 + MIR SINE MIR 36 247 -15 2109 98 0 44 chr11 20158060 20158386 -130625167 - AluSc SINE Alu 0 313 1 665 273 178 32 chr11 20158422 20158838 -130624715 + MLT1J1 LTR MaLR 1 446 0 216 45 23 45 chr11 20158858 20158902 -130624651 + (TTA)n Simple_repeat Simple_repeat 3 45 0 341 314 288 0 chr11 20158949 20159140 -130624413 + MIR SINE MIR 12 257 -5 201 154 0 0 chr11 20159168 20159207 -130624346 + (CAT)n Simple_repeat Simple_repeat 1 39 0 509 281 78 18 chr11 20159545 20159712 -130623841 - MIR SINE MIR -33 229 53 211 289 70 78 chr11 20159786 20159928 -130623625 + MIR3 SINE MIR 9 149 -59 550 223 27 47 chr11 20159947 20160095 -130623458 - MIR SINE MIR -26 236 92 216 0 0 0 chr11 20160798 20160822 -130622731 + (CCTG)n Simple_repeat Simple_repeat 3 26 0 494 298 93 5 chr11 20161532 20161737 -130621816 + MIR SINE MIR 16 238 -24 284 274 0 0 chr11 20162196 20162258 -130621295 - L2 LINE L2 -95 3177 3116 626 264 60 6 chr11 20162764 20162931 -130620622 + MIR SINE MIR 75 250 -12 769 74 0 0 chr11 20163462 20163557 -130619996 + Alu SINE Alu 202 296 -15 323 264 36 18 chr11 20163815 20163925 -130619628 + L2 LINE L2 3115 3226 -46 396 289 100 100 chr11 20165596 20166120 -130617433 - L2 LINE L2 -1 3271 2740 396 0 0 0 chr11 20166253 20166297 -130617256 + (TG)n Simple_repeat Simple_repeat 2 45 0 229 360 104 0 chr11 20166414 20166539 -130617014 - L2 LINE L2 -14 3299 3162 2018 134 67 3 chr11 20166662 20167004 -130616549 - MER47A DNA MER2_type -2 364 1 754 181 138 78 chr11 20167025 20167257 -130616296 - MIR SINE MIR 0 262 17 312 273 11 23 chr11 20167322 20167410 -130616143 + L2 LINE L2 3209 3295 -18 197 244 0 0 chr11 20168654 20168695 -130614858 + L2 LINE L2 3191 3231 -82 645 294 116 45 chr11 20168700 20169062 -130614491 - L2 LINE L2 -1 3271 2837 886 175 73 6 chr11 20169062 20169239 -130614314 + MER5A DNA MER1_type 1 189 0 645 294 116 45 chr11 20169239 20169475 -130614078 - L2 LINE L2 -435 2837 2619 314 280 40 0 chr11 20169471 20169546 -130614007 + L2 LINE L2 3191 3268 -4 * 288 153 51 17 chr11 20169679 20169738 -130613815 + L2 LINE L2 3210 3270 -2 394 198 164 9 chr11 20169749 20169865 -130613688 - MIR SINE MIR -83 179 46 247 234 78 31 chr11 20170533 20170597 -130612956 - MIR SINE MIR -86 176 110 349 264 78 71 chr11 20170763 20170918 -130612635 - MIR SINE MIR -35 173 16 468 316 15 8 chr11 20171180 20171313 -130612240 - L2 LINE L2 -1 3312 3179 234 81 0 0 chr11 20171440 20171477 -130612076 + (TG)n Simple_repeat Simple_repeat 1 37 0 527 212 9 0 chr11 20172403 20172516 -130611037 - MIR SINE MIR -43 219 106 296 303 141 30 chr11 20172633 20172831 -130610722 - MIR SINE MIR -17 245 26 288 323 48 36 chr11 20173180 20173347 -130610206 - MIR SINE MIR -74 188 20 905 173 10 58 chr11 20173517 20173725 -130609828 + L1MB8 LINE L1 5921 6118 -60 186 265 61 0 chr11 20175689 20175738 -130607815 - L2 LINE L2 -63 3209 3158 1888 181 95 14 chr11 20175811 20176241 -130607312 + MLT1C LTR MaLR 1 465 -2 593 291 57 49 chr11 20177154 20177409 -130606144 + MIR SINE MIR 1 233 -29 261 237 33 6 chr11 20177437 20177512 -130606041 + MIR SINE MIR 92 151 -57 1680 236 22 5 chr11 20177910 20178354 -130605199 - L2 LINE L2 -688 2626 2175 792 178 0 0 chr11 20179107 20179236 -130604317 + FLAM_C SINE Alu 3 131 -2 233 362 65 7 chr11 20179527 20179665 -130603888 + MIR SINE MIR 89 234 -28 216 111 0 0 chr11 20180361 20180397 -130603156 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 1777 193 11 22 chr11 20180946 20181303 -130602250 + MLT1A1 LTR MaLR 1 353 -12 203 238 0 0 chr11 20181306 20181348 -130602205 + (CAA)n Simple_repeat Simple_repeat 2 43 0 207 208 21 42 chr11 20181452 20181500 -130602053 - L2 LINE L2 -65 3207 3161 720 293 50 0 chr11 20181515 20181713 -130601840 - MIR SINE MIR -22 240 33 218 263 58 89 chr11 20182578 20182768 -130600785 + L2 LINE L2 2774 2957 -357 378 236 124 79 chr11 20183803 20184044 -130599509 - MIR SINE MIR 0 262 11 335 329 82 12 chr11 20184120 20184290 -130599263 + MIR SINE MIR 13 194 -68 241 331 53 46 chr11 20185151 20185302 -130598251 - MIR SINE MIR -18 244 93 352 231 168 17 chr11 20185495 20185626 -130597927 + MIR SINE MIR 4 150 -58 655 313 99 45 chr11 20185970 20186395 -130597158 + L2 LINE L2 2825 3272 0 570 240 74 6 chr11 20187313 20187491 -130596062 - MIR3 SINE MIR -3 205 8 2254 127 36 30 chr11 20189248 20189610 -130593943 + THE1B LTR MaLR 1 364 0 315 0 0 0 chr11 20190116 20190151 -130593402 + (CA)n Simple_repeat Simple_repeat 2 36 0 2375 110 0 0 chr11 20190828 20191128 -130592425 + AluSc SINE Alu 1 300 -9 267 321 20 73 chr11 20191597 20191843 -130591710 + L2 LINE L2 3023 3255 -58 486 311 31 42 chr11 20192580 20192771 -130590782 - MIR SINE MIR -44 218 34 591 259 100 27 chr11 20192910 20193130 -130590423 - MIR SINE MIR -21 241 6 475 304 25 39 chr11 20193312 20193516 -130590037 - L2 LINE L2 -48 3265 3065 * 1639 258 67 31 chr11 20193509 20193949 -130589604 - L2 LINE L2 -607 2707 2243 478 216 182 7 chr11 20193949 20194097 -130589456 - MER104 DNA MER2_type -2 178 5 1639 258 67 31 chr11 20194097 20194195 -130589358 - L2 LINE L2 -1071 2243 2150 343 78 0 0 chr11 20194199 20194250 -130589303 - MADE1 DNA Mariner 0 80 30 356 275 0 0 chr11 20194596 20194676 -130588877 + MIR3 SINE MIR 111 190 -18 288 288 159 12 chr11 20194711 20194874 -130588679 - MIR SINE MIR -48 214 28 961 201 10 20 chr11 20195374 20195573 -130587980 - MER20 DNA MER1_type 0 219 23 210 207 17 17 chr11 20195817 20195875 -130587678 + CT-rich Low_complexity Low_complexity 2 59 0 2863 0 0 0 chr11 20195885 20196184 -130587369 - AluYa5 SINE Alu -12 299 1 356 243 18 118 chr11 20196399 20196568 -130586985 + L2 LINE L2 3159 3310 -3 253 248 133 44 chr11 20196560 20196673 -130586880 - L2 LINE L2 -16 3297 3175 * 618 297 110 17 chr11 20196989 20197225 -130586328 + MIR SINE MIR 2 259 -3 235 246 0 16 chr11 20198189 20198250 -130585303 - MIR SINE MIR -82 126 67 433 365 20 29 chr11 20198263 20198507 -130585046 - MIR SINE MIR -13 249 8 450 219 199 27 chr11 20198599 20198745 -130584808 + MER5A DNA MER1_type 16 186 -3 234 263 111 24 chr11 20198771 20198880 -130584673 - MIR SINE MIR -69 193 66 23 33 0 0 chr11 20199376 20199406 -130584147 + AT_rich Low_complexity Low_complexity 1 30 0 646 233 144 19 chr11 20199465 20199685 -130583868 - MIR SINE MIR 0 262 13 887 221 150 9 chr11 20200701 20200927 -130582626 - MIR SINE MIR -1 261 4 231 208 57 0 chr11 20201066 20201119 -130582434 + MIR SINE MIR 50 105 -103 713 286 117 38 chr11 20201308 20201703 -130581850 - MLT1K LTR MaLR -10 578 153 285 345 28 14 chr11 20201975 20202120 -130581433 - L2 LINE L2 -520 2794 2648 698 282 94 4 chr11 20202136 20202370 -130581183 + MIR SINE MIR 2 256 -6 423 250 56 0 chr11 20202465 20202573 -130580980 + MIR SINE MIR 28 141 -121 186 313 0 60 chr11 20202599 20202666 -130580887 + MIR SINE MIR 198 260 -2 2212 34 42 0 chr11 20202722 20202987 -130580566 + L1PA5 LINE L1 5875 6150 -4 636 209 44 95 chr11 20203820 20204041 -130579512 - MER112 DNA MER1_type -1 259 53 1853 112 0 12 chr11 20204041 20204299 -130579254 - AluSq SINE Alu -58 255 1 636 209 44 95 chr11 20204299 20204350 -130579203 - MER112 DNA MER1_type -207 53 1 930 222 16 0 chr11 20204359 20204544 -130579009 - MER5A DNA MER1_type -1 188 1 349 277 30 20 chr11 20204549 20204650 -130578903 - MIR SINE MIR -112 150 49 221 321 68 53 chr11 20204776 20204966 -130578587 - MIR3 SINE MIR -1 207 15 243 336 100 44 chr11 20205204 20205433 -130578120 + MIR SINE MIR 20 261 -1 331 233 204 0 chr11 20205437 20205540 -130578013 - L2 LINE L2 -1 3312 3189 367 336 8 8 chr11 20205569 20205697 -130577856 - MER117 DNA MER1_type -42 155 28 476 273 9 0 chr11 20206690 20206807 -130576746 + MIR3 SINE MIR 82 199 -9 30 45 0 0 chr11 20207629 20207673 -130575880 + AT_rich Low_complexity Low_complexity 1 44 0 353 228 25 0 chr11 20207903 20207982 -130575571 - MIR SINE MIR -64 198 118 22 0 0 0 chr11 20208312 20208334 -130575219 + AT_rich Low_complexity Low_complexity 1 22 0 211 219 16 16 chr11 20209111 20209175 -130574378 + CT-rich Low_complexity Low_complexity 2 65 0 315 0 0 0 chr11 20209175 20209210 -130574343 + (CA)n Simple_repeat Simple_repeat 2 36 0 * 339 44 0 0 chr11 20209209 20209254 -130574299 + (GA)n Simple_repeat Simple_repeat 2 46 0 399 285 42 18 chr11 20209450 20209615 -130573938 - L1ME LINE L1 -319 5802 5634 445 260 126 39 chr11 20210288 20210443 -130573110 + MIR SINE MIR 12 195 -67 1852 188 93 36 chr11 20210443 20210885 -130572668 - MLT1C LTR MaLR 0 467 1 445 260 126 39 chr11 20210885 20210960 -130572593 + MIR SINE MIR 195 262 0 211 224 69 0 chr11 20211004 20211062 -130572491 - MIR SINE MIR -96 166 105 276 204 28 197 chr11 20211139 20211281 -130572272 + MIR SINE MIR 133 250 -12 375 236 16 49 chr11 20212452 20212541 -130571012 - LTR33 LTR ERVL -8 513 428 1687 195 103 0 chr11 20212541 20212900 -130570653 - MSTD LTR MaLR 0 396 1 375 236 16 49 chr11 20212900 20212933 -130570620 - LTR33 LTR ERVL -93 428 395 546 238 166 6 chr11 20213036 20213217 -130570336 - LTR33 LTR ERVL -310 211 2 394 302 94 13 chr11 20213435 20213594 -130569959 + MIR SINE MIR 89 260 -2 367 303 61 61 chr11 20213609 20213807 -130569746 - MIR SINE MIR -3 259 62 369 308 56 0 chr11 20214236 20214379 -130569174 + MIR3 SINE MIR 48 198 -10 891 282 53 8 chr11 20214422 20214667 -130568886 + MIR SINE MIR 5 260 -2 318 237 207 7 chr11 20214747 20214882 -130568671 + MIR SINE MIR 92 253 -9 23 0 0 0 chr11 20215571 20215594 -130567959 + AT_rich Low_complexity Low_complexity 1 23 0 424 281 62 0 chr11 20215733 20215861 -130567692 - MLT1J LTR MaLR -286 225 90 605 289 62 80 chr11 20215892 20216228 -130567325 + LTR16A LTR ERVL 16 345 -105 329 314 202 16 chr11 20216366 20216614 -130566939 + L1MC4a LINE L1 5611 5904 -1904 325 312 123 7 chr11 20217016 20217170 -130566383 + MIR SINE MIR 84 255 -7 356 293 83 74 chr11 20217974 20218173 -130565380 + Charlie8 DNA MER1_type 100 303 -2114 2281 79 0 3 chr11 20218173 20218465 -130565088 - AluSc SINE Alu -18 291 1 356 293 83 74 chr11 20218465 20218494 -130565059 + Charlie8 DNA MER1_type 303 330 -2087 328 221 44 0 chr11 20219724 20219792 -130563761 + MIR SINE MIR 81 151 -111 407 283 19 44 chr11 20219903 20220062 -130563491 - MIR SINE MIR -55 207 53 432 259 154 65 chr11 20221608 20221809 -130561744 - MIR SINE MIR -10 252 34 763 201 15 0 chr11 20222178 20222312 -130561241 + MER58B DNA MER1_type 191 326 -15 503 218 97 0 chr11 20222335 20222459 -130561094 + MER103 DNA DNA 24 159 -7 244 255 99 43 chr11 20222508 20222649 -130560904 - MIR3 SINE MIR -58 150 2 862 289 4 13 chr11 20223647 20223879 -130559674 + MIR SINE MIR 13 242 -20 492 247 20 53 chr11 20224279 20224429 -130559124 - MIR SINE MIR -4 258 114 279 248 8 101 chr11 20225219 20225348 -130558205 - MIR SINE MIR 0 262 146 3664 177 69 11 chr11 20225360 20226028 -130557525 + MER44D DNA MER2_type 27 605 0 263 295 149 5 chr11 20226028 20226143 -130557410 - MIR SINE MIR -63 145 17 300 27 0 0 chr11 20226315 20226352 -130557201 + (CA)n Simple_repeat Simple_repeat 1 37 0 379 310 31 16 chr11 20226474 20226603 -130556950 - L3 LINE CR1 -78 1499 1369 199 246 72 130 chr11 20227368 20227506 -130556047 + MIR SINE MIR 65 195 -13 181 341 119 0 chr11 20228512 20228563 -130554990 + L2 LINE L2 2916 2960 -312 2599 96 19 26 chr11 20228563 20228940 -130554613 + THE1C LTR MaLR 1 374 -1 181 341 119 0 chr11 20228940 20229014 -130554539 + L2 LINE L2 2960 3056 -216 231 211 224 0 chr11 20229257 20229333 -130554220 + MIR3 SINE MIR 91 183 -25 972 206 76 160 chr11 20229565 20230173 -130553380 + MLT1E LTR MaLR 27 567 0 283 283 75 47 chr11 20230286 20230392 -130553161 + MIR3 SINE MIR 68 176 -32 392 304 131 11 chr11 20230699 20230890 -130552663 + MIR SINE MIR 33 246 -16 255 250 33 0 chr11 20231004 20231064 -130552489 - MIR SINE MIR -12 250 189 12647 168 102 17 chr11 20231622 20233848 -130549705 - Tigger1 DNA MER2_type 0 2418 3 619 303 68 8 chr11 20233897 20234131 -130549422 + MLT1J LTR MaLR 180 427 -84 258 293 68 20 chr11 20234244 20234391 -130549162 + L1ME LINE L1 5635 5788 -333 468 317 34 29 chr11 20234424 20234632 -130548921 + MIR SINE MIR 33 241 -21 211 291 13 25 chr11 20234648 20234727 -130548826 + CT-rich Low_complexity Low_complexity 1 78 0 294 259 217 7 chr11 20235955 20236098 -130547455 - MIR SINE MIR -72 190 18 250 316 63 11 chr11 20236105 20236200 -130547353 + MER5B DNA MER1_type 6 105 -73 255 297 108 80 chr11 20236734 20236983 -130546570 - L2 LINE L2 -1 3271 3016 357 275 237 0 chr11 20237083 20237214 -130546339 - L2 LINE L2 0 3313 3152 24 77 0 0 chr11 20237235 20237287 -130546266 + AT_rich Low_complexity Low_complexity 1 52 0 2784 188 34 9 chr11 20237718 20238244 -130545309 - MLT1F LTR MaLR -3 539 1 213 43 0 65 chr11 20238321 20238367 -130545186 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 380 282 86 4 chr11 20238436 20238567 -130544986 + MIR SINE MIR 44 188 -60 862 250 10 0 chr11 20238614 20238810 -130544743 + MIR SINE MIR 50 247 -15 745 285 54 0 chr11 20239412 20239633 -130543920 - MIR SINE MIR -21 241 9 235 311 0 0 chr11 20239754 20239815 -130543738 + MIR SINE MIR 93 153 -55 262 312 173 25 chr11 20239829 20240031 -130543522 + MIR SINE MIR 21 252 -10 212 315 0 0 chr11 20240155 20240209 -130543344 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 253 256 44 44 chr11 20241002 20241092 -130542461 - MIR SINE MIR -87 121 32 191 172 115 126 chr11 20241187 20241274 -130542279 - L3 LINE CR1 -896 681 596 1587 168 0 41 chr11 20241379 20241695 -130541858 - AluJo SINE Alu -7 305 3 419 279 41 34 chr11 20241762 20241775 -130541778 + L2 LINE L2 3156 3167 -146 1018 107 0 19 chr11 20241775 20241934 -130541619 - L1MD1 LINE L1 0 6242 6087 419 279 41 34 chr11 20241934 20242067 -130541486 + L2 LINE L2 3167 3303 -10 700 216 202 5 chr11 20242229 20242437 -130541116 + Charlie2a DNA MER1_type 1 249 -2613 477 238 7 26 chr11 20242438 20242589 -130540964 + Charlie2a DNA MER1_type 869 1016 -1846 350 170 38 57 chr11 20242598 20242704 -130540849 + Charlie2a DNA MER1_type 2759 2862 0 357 276 138 51 chr11 20243405 20243601 -130539952 - MIR SINE MIR 0 262 50 664 256 23 12 chr11 20243791 20243963 -130539590 + AluJb SINE Alu 135 308 -4 309 159 0 0 chr11 20243965 20244028 -130539525 + GA-rich Low_complexity Low_complexity 3 65 0 310 200 46 0 chr11 20244034 20244099 -130539454 - MER103 DNA DNA -87 79 12 406 386 33 0 chr11 20245062 20245272 -130538281 - L3 LINE CR1 -3 1574 1358 * 892 272 27 27 chr11 20245270 20245531 -130538022 - MIR SINE MIR 0 262 2 515 293 113 13 chr11 20245539 20245768 -130537785 - MIR SINE MIR 0 262 11 230 222 103 68 chr11 20245790 20245907 -130537646 - MIR SINE MIR -121 141 21 501 280 21 14 chr11 20246173 20246316 -130537237 + MIR SINE MIR 32 175 -87 384 308 123 20 chr11 20246586 20246781 -130536772 + MIR SINE MIR 2 216 -46 276 156 0 0 chr11 20247122 20247167 -130536386 + MIR SINE MIR 210 254 -8 331 270 38 106 chr11 20247796 20248033 -130535520 + MIR SINE MIR 22 242 -20 1423 77 116 5 chr11 20248714 20248921 -130534632 - MER30 DNA MER1_type 0 230 1 182 208 21 0 chr11 20250792 20250840 -130532713 + (TAA)n Simple_repeat Simple_repeat 3 51 0 354 324 13 1 chr11 20251010 20251133 -130532420 - MIR SINE MIR -68 140 15 501 283 100 35 chr11 20251363 20251593 -130531960 - MIR SINE MIR -10 252 8 2227 71 3 32 chr11 20251630 20251940 -130531613 + AluY SINE Alu 1 301 -10 483 346 24 19 chr11 20253389 20253600 -130529953 - MIR SINE MIR -11 251 40 2576 175 12 24 chr11 20253750 20254242 -130529311 + MER66B LTR ERV1 1 486 0 214 278 83 19 chr11 20254410 20254518 -130529035 - MIR SINE MIR -68 140 26 257 103 10 82 chr11 20254892 20254989 -130528564 + (TCTCC)n Simple_repeat Simple_repeat 2 91 0 472 361 26 9 chr11 20257168 20257398 -130526155 - MIR SINE MIR -6 256 23 242 259 46 76 chr11 20257583 20257714 -130525839 + MIR3 SINE MIR 46 172 -36 1813 34 102 0 chr11 20257762 20257997 -130525556 + AluSp SINE Alu 35 293 -20 21 0 0 0 chr11 20258003 20258024 -130525529 + AT_rich Low_complexity Low_complexity 1 21 0 756 274 156 2 chr11 20258143 20258514 -130525039 - LTR16A LTR ERVL 0 491 16 332 307 136 14 chr11 20258854 20258883 -130524670 - MER91A DNA MER1_type -39 157 133 279 0 0 0 chr11 20258883 20258914 -130524639 + (CCCCAG)n Simple_repeat Simple_repeat 2 32 0 332 307 136 14 chr11 20258914 20259024 -130524529 - MER91A DNA MER1_type -63 133 1 508 275 133 17 chr11 20259155 20259395 -130524158 + L1ME4a LINE L1 5598 5865 -256 1634 229 60 4 chr11 20259516 20259970 -130523583 - Charlie4a DNA MER1_type 0 508 30 503 342 30 15 chr11 20260187 20260386 -130523167 - MIR SINE MIR -49 213 12 353 259 121 20 chr11 20261073 20261230 -130522323 + MIR SINE MIR 2 212 -50 471 203 187 0 chr11 20261230 20261353 -130522200 - MLT1H LTR MaLR -2 593 448 2319 167 16 98 chr11 20261468 20261970 -130521583 - LTR32 LTR ERVL -2 469 9 753 234 98 17 chr11 20261963 20262198 -130521355 - MLT1H LTR MaLR -295 254 1 * 211 250 0 0 chr11 20262199 20262243 -130521310 + MIR SINE MIR 207 250 -12 319 268 36 43 chr11 20262252 20262385 -130521168 - MIR SINE MIR -68 140 11 312 336 16 25 chr11 20262389 20262511 -130521042 + MIR SINE MIR 79 199 -63 596 286 60 0 chr11 20263403 20263571 -130519982 + MIR SINE MIR 29 206 -56 574 182 38 50 chr11 20263911 20264070 -130519483 + MER103 DNA DNA 2 158 -8 266 196 0 0 chr11 20264821 20264872 -130518681 - MIR SINE MIR -140 122 72 188 316 108 38 chr11 20266199 20266357 -130517196 - MIR3 SINE MIR -39 169 1 353 305 115 40 chr11 20266580 20266754 -130516799 + MER5A DNA MER1_type 1 187 -2 756 244 104 5 chr11 20266769 20266970 -130516583 + MIR SINE MIR 32 252 -10 27 49 0 0 chr11 20266993 20267034 -130516519 + AT_rich Low_complexity Low_complexity 1 41 0 308 286 0 0 chr11 20267803 20267880 -130515673 - MIR SINE MIR -65 143 67 1891 118 7 4 chr11 20267896 20268176 -130515377 + AluSx SINE Alu 1 281 -31 1739 145 0 30 chr11 20269075 20269421 -130514132 - AluJb SINE Alu 0 337 1 224 282 68 39 chr11 20269774 20269877 -130513676 - MIR SINE MIR -72 190 85 494 270 0 0 chr11 20270528 20270639 -130512914 - MIR SINE MIR -147 115 5 524 254 71 119 chr11 20270717 20271138 -130512415 + L2 LINE L2 2871 3271 -1 359 252 97 58 chr11 20271612 20271818 -130511735 - MIR SINE MIR -20 242 29 22 0 0 0 chr11 20272152 20272174 -130511379 + AT_rich Low_complexity Low_complexity 1 22 0 559 240 13 45 chr11 20272382 20272536 -130511017 + L2 LINE L2 3165 3313 0 247 164 82 66 chr11 20272658 20272719 -130510834 + L2 LINE L2 3200 3261 -11 333 339 37 2 chr11 20273193 20273368 -130510185 + MIR SINE MIR 7 184 -78 4944 163 30 22 chr11 20273368 20274472 -130509081 + L1MB5 LINE L1 5009 6136 -38 2039 109 17 0 chr11 20274472 20274774 -130508779 + AluSq SINE Alu 1 307 -6 4944 163 30 22 chr11 20274774 20274814 -130508739 + L1MB5 LINE L1 6136 6174 0 272 287 53 21 chr11 20275312 20275406 -130508147 - MIR3 SINE MIR -17 191 95 712 273 10 12 chr11 20275676 20275887 -130507666 + MIR SINE MIR 10 261 -1 994 253 70 55 chr11 20276122 20276521 -130507032 + L2 LINE L2 2909 3313 0 303 288 242 26 chr11 20276586 20276739 -130506814 - MIR SINE MIR -14 248 63 448 302 141 19 chr11 20277132 20277345 -130506208 + MIR SINE MIR 30 262 0 204 86 14 93 chr11 20277364 20277446 -130506107 + MIR SINE MIR 128 256 -6 559 301 102 34 chr11 20277669 20278021 -130505532 - L2 LINE L2 -17 3296 2921 272 327 43 83 chr11 20278598 20278876 -130504677 + L2 LINE L2 2997 3263 -9 * 306 218 51 13 chr11 20278849 20278927 -130504626 - L2 LINE L2 -2 3311 3231 406 269 109 8 chr11 20279048 20279167 -130504386 - MIR3 SINE MIR -70 138 8 518 158 219 0 chr11 20279449 20279563 -130503990 - L1ME4a LINE L1 0 6121 5983 218 325 183 16 chr11 20279776 20279902 -130503651 + L2 LINE L2 3123 3269 -3 231 276 55 39 chr11 20280011 20280138 -130503415 + L2 LINE L2 3183 3311 -2 436 250 101 27 chr11 20280150 20280298 -130503255 - MIR SINE MIR -41 221 63 554 242 23 8 chr11 20281786 20281914 -130501639 + MER58B DNA MER1_type 212 341 0 197 132 0 151 chr11 20281952 20282005 -130501548 - MIR SINE MIR -149 113 69 626 267 41 12 chr11 20282207 20282379 -130501174 + MIR SINE MIR 66 242 -20 605 314 9 65 chr11 20282556 20282785 -130500768 + MIR SINE MIR 47 262 0 1326 126 372 0 chr11 20283387 20283664 -130499889 - MSTC LTR MaLR -48 380 1 249 244 0 0 chr11 20283665 20283710 -130499843 - MIR SINE MIR -8 254 210 645 259 46 23 chr11 20283710 20283926 -130499627 - L1ME LINE L1 -384 5778 5558 256 288 147 5 chr11 20284035 20284226 -130499327 - L1ME LINE L1 -913 5233 5016 * 44065 46 2 2 chr11 20284222 20290370 -130493183 - L1PA4 LINE L1 -2 6153 7 354 301 25 37 chr11 20290602 20290765 -130492788 - MLT1J1 LTR MaLR 0 446 286 355 260 90 0 chr11 20290829 20290929 -130492624 + L2 LINE L2 3205 3313 0 22 0 0 0 chr11 20291138 20291160 -130492393 + AT_rich Low_complexity Low_complexity 1 22 0 317 189 0 0 chr11 20291313 20291366 -130492187 + MER117 DNA MER1_type 109 161 -36 225 151 0 0 chr11 20292071 20292124 -130491429 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 220 256 141 70 chr11 20292264 20292420 -130491133 - L2 LINE L2 -180 3092 2926 287 297 11 0 chr11 20292756 20292845 -130490708 + MIR SINE MIR 41 130 -78 976 268 17 0 chr11 20292845 20293084 -130490469 + MIR SINE MIR 2 244 -18 222 320 103 0 chr11 20294377 20294474 -130489079 - L2 LINE L2 -25 3247 3141 1251 187 16 0 chr11 20294856 20295135 -130488418 - L1MC/D LINE L1 -731 5511 5229 502 185 11 0 chr11 20295137 20295229 -130488324 - MIR SINE MIR -65 197 105 292 290 74 34 chr11 20295686 20295848 -130487705 + MIR SINE MIR 22 189 -61 721 281 25 5 chr11 20295855 20296051 -130487502 + MIR SINE MIR 13 212 -50 783 266 180 37 chr11 20296152 20296558 -130486995 - LTR16C LTR ERVL -27 464 1 716 212 20 7 chr11 20296562 20296713 -130486840 - MIR SINE MIR -47 215 63 1635 154 22 45 chr11 20296717 20297029 -130486524 - AluJb SINE Alu -7 305 1 876 246 12 23 chr11 20297041 20297297 -130486256 + MER112 DNA MER1_type 7 259 -1 316 229 46 37 chr11 20297857 20297966 -130485587 - MIR SINE MIR -84 178 69 590 297 84 5 chr11 20298052 20298254 -130485299 + MIR SINE MIR 32 249 -13 869 239 51 47 chr11 20299500 20299755 -130483798 - MIR SINE MIR -1 261 6 1422 229 45 6 chr11 20300930 20301262 -130482291 - LTR16C LTR ERVL 0 491 147 1166 254 15 8 chr11 20301525 20301785 -130481768 + MIR SINE MIR 1 262 0 386 294 87 8 chr11 20301785 20301911 -130481642 - MIR SINE MIR -121 141 6 311 181 28 28 chr11 20303007 20303079 -130480474 - MLT1K LTR MaLR -327 261 190 2195 113 0 0 chr11 20303158 20303460 -130480093 - AluSg SINE Alu -8 302 1 409 295 94 41 chr11 20303471 20303487 -130480066 - L2 LINE L2 -257 3015 3001 1273 221 103 36 chr11 20303487 20303925 -130479628 - MLT1C LTR MaLR 0 467 1 409 295 94 41 chr11 20303925 20304274 -130479279 - L2 LINE L2 -271 3001 2629 2161 262 46 33 chr11 20304274 20304330 -130479223 - L2 LINE L2 -25 3288 3234 2061 120 0 16 chr11 20304330 20304646 -130478907 + AluY SINE Alu 1 311 0 2161 262 46 33 chr11 20304646 20305546 -130478007 - L2 LINE L2 -79 3234 2319 831 277 29 25 chr11 20305549 20305687 -130477866 - MIR SINE MIR -18 244 103 2235 120 45 25 chr11 20305687 20306044 -130477509 + THE1B LTR MaLR 1 364 0 831 277 29 25 chr11 20306044 20306147 -130477406 - MIR SINE MIR -159 103 2 28 0 0 0 chr11 20306508 20306536 -130477017 + AT_rich Low_complexity Low_complexity 1 28 0 469 304 50 8 chr11 20307239 20307438 -130476115 - MIR SINE MIR -16 246 42 506 232 196 0 chr11 20307830 20307968 -130475585 + MER5A DNA MER1_type 25 189 0 211 269 151 8 chr11 20308920 20309039 -130474514 - MIR SINE MIR -3 259 124 2101 174 102 9 chr11 20309706 20310166 -130473387 - MLT1D LTR MaLR -2 503 1 194 281 31 21 chr11 20310434 20310530 -130473023 - L2 LINE L2 -263 3009 2913 290 271 21 21 chr11 20310901 20310997 -130472556 - MIR SINE MIR -48 214 119 920 150 0 11 chr11 20311667 20311847 -130471706 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 2894 62 6 0 chr11 20312078 20312431 -130471122 - THE1A LTR MaLR 0 355 1 11992 87 10 1 chr11 20312431 20313998 -130469555 - THE1A-int LTR MaLR 0 1580 1 2587 91 3 19 chr11 20313998 20314359 -130469194 - THE1A LTR MaLR 0 355 1 732 221 113 5 chr11 20314808 20315003 -130468550 + MIR SINE MIR 36 251 -11 206 258 30 15 chr11 20315067 20315133 -130468420 - L2 LINE L2 0 3313 3247 189 107 0 0 chr11 20315500 20315528 -130468025 + (TC)n Simple_repeat Simple_repeat 2 29 0 578 200 26 0 chr11 20315534 20315649 -130467904 - L1MC1 LINE L1 -6 6327 6210 413 191 110 44 chr11 20316772 20316908 -130466645 + MER103 DNA DNA 8 152 -14 321 185 33 87 chr11 20316920 20317012 -130466541 - L1MCa LINE L1 -4363 2063 1977 223 360 0 30 chr11 20317515 20317615 -130465938 + L3 LINE CR1 1306 1402 -175 1048 319 100 36 chr11 20317791 20318577 -130464976 + L2 LINE L2 2469 3313 0 295 306 144 58 chr11 20318837 20319010 -130464543 + L3b LINE CR1 1378 1565 -18 6385 28 1 5 chr11 20319686 20320433 -130463120 - L1PA4 LINE L1 0 6155 5412 220 216 0 20 chr11 20320555 20320606 -130462947 + (TG)n Simple_repeat Simple_repeat 1 50 0 253 315 25 68 chr11 20321435 20321516 -130462037 + MER117 DNA MER1_type 42 114 -83 2450 188 26 18 chr11 20321516 20322015 -130461538 - MLT1D LTR MaLR -1 504 2 253 315 25 68 chr11 20322015 20322095 -130461458 + MER117 DNA MER1_type 114 196 -1 228 271 29 0 chr11 20322168 20322238 -130461315 - MIR SINE MIR -6 256 185 199 241 323 0 chr11 20322285 20322418 -130461135 + L2 LINE L2 2970 3145 -168 2070 101 30 0 chr11 20323266 20323563 -130459990 - AluSq SINE Alu -7 306 1 738 272 27 5 chr11 20323688 20323872 -130459681 + MIR SINE MIR 70 257 -5 589 254 21 7 chr11 20324068 20324210 -130459343 - MIR3 SINE MIR -32 176 33 487 236 155 0 chr11 20324312 20324473 -130459080 - MER5A DNA MER1_type 0 189 4 1446 180 3 10 chr11 20324483 20324783 -130458770 - MER33 DNA MER1_type 0 324 27 839 116 0 0 chr11 20324857 20324986 -130458567 - AluY SINE Alu 0 311 183 510 228 97 0 chr11 20326003 20326117 -130457436 - L2 LINE L2 0 3313 3189 255 260 39 0 chr11 20327210 20327287 -130456266 - MER116 DNA Mariner 0 80 1 288 286 110 0 chr11 20327292 20327383 -130456170 - MIR SINE MIR -3 259 159 807 249 112 13 chr11 20327383 20327616 -130455937 - LTR16A1 LTR ERVL 0 457 202 312 277 99 10 chr11 20327803 20327904 -130455649 - MIR SINE MIR -97 165 56 500 280 101 6 chr11 20328532 20328700 -130454853 + MIR SINE MIR 3 186 -76 1936 114 0 0 chr11 20328923 20329186 -130454367 + AluSx SINE Alu 1 263 -49 279 0 0 0 chr11 20329189 20329220 -130454333 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 22 0 0 0 chr11 20329468 20329490 -130454063 + AT_rich Low_complexity Low_complexity 1 22 0 227 321 38 76 chr11 20330000 20330125 -130453428 - L2 LINE L2 0 3272 3153 312 140 0 35 chr11 20330125 20330182 -130453371 + MER5B DNA MER1_type 1 55 -123 360 260 0 0 chr11 20330205 20330282 -130453271 - MIR SINE MIR -74 188 112 557 201 87 47 chr11 20330399 20330548 -130453005 - MIR SINE MIR -76 186 32 749 262 33 10 chr11 20331265 20331513 -130452040 - MIR SINE MIR 0 262 8 338 395 40 0 chr11 20332077 20332254 -130451299 - MIR SINE MIR -78 184 1 284 318 130 32 chr11 20332435 20332589 -130450964 - MIR SINE MIR -2 260 92 1907 177 59 35 chr11 20332638 20333062 -130450491 - MER63B DNA MER1_type -2 434 1 627 263 170 19 chr11 20333405 20333823 -130449730 - L1ME4a LINE L1 -35 6086 5606 2784 214 41 36 chr11 20333948 20333969 -130449584 + L1ME2 LINE L1 5263 5282 -896 1860 193 25 3 chr11 20333969 20334322 -130449231 - MLT1A1 LTR MaLR 0 365 5 2784 214 41 36 chr11 20334322 20334651 -130448902 + L1ME2 LINE L1 5282 5608 -570 1760 176 54 77 chr11 20334651 20335129 -130448424 + MLT1C LTR MaLR 1 467 0 2784 214 41 36 chr11 20335129 20335633 -130447920 + L1ME2 LINE L1 5608 6170 -8 429 316 44 0 chr11 20336180 20336316 -130447237 + MIR SINE MIR 109 250 -12 527 275 88 5 chr11 20337361 20337554 -130445999 - L1MC4a LINE L1 -1877 5931 5723 413 303 158 23 chr11 20337988 20338209 -130445344 - MIR SINE MIR -6 256 6 720 318 50 4 chr11 20338239 20338478 -130445075 - MIR SINE MIR 0 262 13 10105 35 1 4 chr11 20338532 20340503 -130443050 + L1PA4 LINE L1 4187 6155 0 1232 261 106 109 chr11 20340944 20341849 -130441704 - L2 LINE L2 -345 2969 2068 266 266 0 32 chr11 20342584 20342678 -130440875 - MIR SINE MIR 0 262 172 1038 231 14 5 chr11 20342690 20342906 -130440647 - MIR SINE MIR -43 219 2 621 281 49 49 chr11 20342906 20343112 -130440441 - MIR SINE MIR -56 206 1 557 229 157 74 chr11 20343592 20343929 -130439624 - L2 LINE L2 -495 2819 2455 933 284 5 0 chr11 20343973 20344188 -130439365 + MIR SINE MIR 33 248 -14 246 62 0 0 chr11 20344193 20344225 -130439328 + (TTA)n Simple_repeat Simple_repeat 1 32 0 23 33 0 0 chr11 20344950 20344980 -130438573 + AT_rich Low_complexity Low_complexity 1 30 0 2696 150 2 13 chr11 20345155 20345628 -130437925 - L1MB3 LINE L1 0 6183 5716 412 343 42 19 chr11 20345787 20346003 -130437550 + MIR SINE MIR 39 259 -3 190 333 178 11 chr11 20346066 20346156 -130437397 - MIR SINE MIR -64 144 40 295 272 38 8 chr11 20346199 20346332 -130437221 + MER117 DNA MER1_type 27 197 0 875 303 22 4 chr11 20347515 20347746 -130435807 - MIR SINE MIR -6 256 22 486 323 21 5 chr11 20348127 20348319 -130435234 - MER117 DNA MER1_type 0 197 3 592 293 32 45 chr11 20349050 20349296 -130434257 - MIR SINE MIR -10 252 10 262 217 72 12 chr11 20349760 20349843 -130433710 + MIR SINE MIR 128 215 -47 408 88 0 0 chr11 20350155 20350212 -130433341 + (CAT)n Simple_repeat Simple_repeat 2 58 0 270 333 98 25 chr11 20350238 20350442 -130433111 - MIR SINE MIR -36 226 8 202 158 26 0 chr11 20350488 20350526 -130433027 - MER5A DNA MER1_type -76 113 75 720 268 11 17 chr11 20351017 20351196 -130432357 + MER5B DNA MER1_type 1 178 0 242 363 114 21 chr11 20351213 20351450 -130432103 + L2 LINE L2 3014 3272 0 437 310 56 0 chr11 20351471 20351613 -130431940 - L2 LINE L2 -7 3265 3116 298 244 0 61 chr11 20351796 20351878 -130431675 + L2 LINE L2 3196 3272 0 2060 126 17 0 chr11 20352495 20352796 -130430757 + AluSx SINE Alu 1 306 -6 643 276 60 0 chr11 20353615 20353800 -130429753 + MIR SINE MIR 63 258 -4 372 307 100 51 chr11 20354207 20354688 -130428865 + L2 LINE L2 2762 3267 -5 245 353 43 0 chr11 20355253 20355392 -130428161 + MER117 DNA MER1_type 2 146 -51 1138 187 34 5 chr11 20355873 20356082 -130427471 - MER58C DNA MER1_type 0 215 1 249 339 227 4 chr11 20356091 20356351 -130427202 - L2 LINE L2 -12 3260 2943 402 339 54 6 chr11 20356653 20356821 -130426732 + MIR SINE MIR 46 221 -41 866 270 26 17 chr11 20357513 20357746 -130425807 - MIR SINE MIR -14 248 14 446 278 16 0 chr11 20359119 20359245 -130424308 + MIR SINE MIR 113 240 -22 504 319 96 93 chr11 20359498 20359843 -130423710 + L2 LINE L2 2924 3269 -3 497 209 113 0 chr11 20360114 20360229 -130423324 - MIR SINE MIR -10 252 125 488 276 143 33 chr11 20360489 20360699 -130422854 + MIR SINE MIR 20 252 -10 466 169 12 0 chr11 20361697 20361780 -130421773 - MIR SINE MIR -58 150 67 316 389 0 0 chr11 20361771 20361897 -130421656 - MIR3 SINE MIR -1 207 82 * 1450 154 14 0 chr11 20361946 20362167 -130421386 + MER58A DNA MER1_type 1 224 0 658 312 86 33 chr11 20362445 20362655 -130420898 - MIR SINE MIR -28 234 17 203 256 78 101 chr11 20362734 20362863 -130420690 - L2 LINE L2 -9 3263 3138 2141 114 0 0 chr11 20363386 20363683 -130419870 + AluSx SINE Alu 1 297 -15 547 300 47 97 chr11 20363807 20364127 -130419426 + L2 LINE L2 2963 3266 -6 849 239 84 5 chr11 20364797 20365026 -130418527 + MIR SINE MIR 16 261 -1 859 205 95 24 chr11 20365193 20365403 -130418150 - MIR SINE MIR -3 259 35 347 320 140 11 chr11 20365495 20365673 -130417880 - MIR SINE MIR -15 247 47 338 248 215 0 chr11 20366507 20366628 -130416925 - MIR SINE MIR -24 238 92 515 293 47 14 chr11 20366667 20366742 -130416811 - MIR SINE MIR -31 231 160 2368 126 78 8 chr11 20366742 20367140 -130416413 - MSTB LTR MaLR 0 426 1 515 293 47 14 chr11 20367140 20367278 -130416275 - MIR SINE MIR -102 160 5 210 260 0 106 chr11 20367300 20367404 -130416149 + MIR3 SINE MIR 113 205 -3 187 200 0 91 chr11 20367940 20367995 -130415558 + MIR SINE MIR 63 112 -150 28 0 0 0 chr11 20368097 20368125 -130415428 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 20368213 20368235 -130415318 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 20368552 20368580 -130414973 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 20368671 20368692 -130414861 + AT_rich Low_complexity Low_complexity 1 21 0 291 238 30 40 chr11 20368785 20368886 -130414667 + MIR SINE MIR 106 205 -57 268 246 0 31 chr11 20369577 20369642 -130413911 + L2 LINE L2 3198 3260 -12 275 340 50 28 chr11 20370369 20370510 -130413043 + MIR3 SINE MIR 43 186 -22 298 315 63 9 chr11 20370602 20370713 -130412840 + L2 LINE L2 2698 2814 -500 329 259 93 58 chr11 20371386 20371525 -130412028 + MIR3 SINE MIR 20 163 -45 * 858 256 94 13 chr11 20371523 20371757 -130411796 - MIR SINE MIR -1 261 9 623 196 165 0 chr11 20372067 20372225 -130411328 - L1ME3A LINE L1 -2 6168 5985 297 230 0 0 chr11 20372422 20372496 -130411057 + (TG)n Simple_repeat Simple_repeat 1 74 0 552 195 24 32 chr11 20373515 20373638 -130409915 - MER94 DNA DNA -11 123 2 490 323 101 5 chr11 20374210 20374408 -130409145 + MIR SINE MIR 46 262 0 346 269 27 81 chr11 20374456 20374605 -130408948 - MIR3 SINE MIR -32 176 36 189 180 0 0 chr11 20374855 20374905 -130408648 + (TG)n Simple_repeat Simple_repeat 2 51 0 472 237 128 26 chr11 20375232 20375388 -130408165 + MIR SINE MIR 21 192 -70 1025 231 25 33 chr11 20376201 20376443 -130407110 - MIR SINE MIR -21 241 2 380 236 91 18 chr11 20376449 20376559 -130406994 - MIR SINE MIR -74 188 71 291 335 78 22 chr11 20376809 20376988 -130406565 + L2 LINE L2 3125 3313 0 460 255 92 44 chr11 20377037 20377221 -130406332 - MIR SINE MIR -51 157 8 253 275 22 55 chr11 20378458 20378549 -130405004 + L2 LINE L2 3168 3255 -17 1622 165 4 0 chr11 20378567 20378880 -130404673 + AluJb SINE Alu 18 331 0 349 264 79 36 chr11 20378977 20379117 -130404436 - L1ME4a LINE L1 -41 6080 5935 36 23 0 0 chr11 20379159 20379202 -130404351 + AT_rich Low_complexity Low_complexity 1 43 0 498 237 50 29 chr11 20379849 20379988 -130403565 - MER5B DNA MER1_type -33 145 4 200 300 175 0 chr11 20380276 20380396 -130403157 + MIR SINE MIR 68 208 -54 713 286 26 30 chr11 20380488 20380719 -130402834 + MIR SINE MIR 32 261 -1 2485 46 3 0 chr11 20380784 20381091 -130402462 + AluY SINE Alu 1 308 -3 306 0 0 0 chr11 20381142 20381176 -130402377 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 6888 122 65 20 chr11 20382823 20383999 -130399554 - Tigger3b DNA MER2_type 0 1231 2 237 65 0 0 chr11 20384953 20384984 -130398569 + (A)n Simple_repeat Simple_repeat 1 31 0 2368 68 0 16 chr11 20385314 20385623 -130397930 + AluY SINE Alu 1 304 -7 407 108 0 34 chr11 20385642 20385864 -130397689 + AluSp SINE Alu 37 301 -12 318 283 50 17 chr11 20386167 20386287 -130397266 - MER117 DNA MER1_type 0 197 74 558 250 160 0 chr11 20386323 20386479 -130397074 + MER5A DNA MER1_type 3 183 -6 889 156 102 12 chr11 20386526 20386693 -130396860 - MER5A DNA MER1_type -7 182 1 1496 186 39 24 chr11 20387298 20387636 -130395917 - MLT1A1 LTR MaLR -2 363 21 365 238 27 103 chr11 20387795 20387980 -130395573 - MIR SINE MIR 0 262 92 23 33 0 0 chr11 20388664 20388694 -130394859 + GC_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr11 20388832 20388855 -130394698 + GC_rich Low_complexity Low_complexity 1 23 0 26 88 0 0 chr11 20388938 20389006 -130394547 + GC_rich Low_complexity Low_complexity 1 68 0 201 250 0 0 chr11 20389227 20389271 -130394282 + CT-rich Low_complexity Low_complexity 3 46 0 23 0 0 0 chr11 20389830 20389853 -130393700 + GC_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr11 20390659 20390682 -130392871 + (TGGGGG)n Simple_repeat Simple_repeat 5 27 0 529 286 126 39 chr11 20392300 20392531 -130391022 + MIR SINE MIR 9 259 -3 718 244 97 8 chr11 20392847 20393085 -130390468 - MIR SINE MIR 0 262 4 281 204 0 0 chr11 20393110 20393159 -130390394 - tRNA-Thr-ACA tRNA tRNA -20 56 8 199 340 68 0 chr11 20393161 20393264 -130390289 - MIR SINE MIR -140 122 13 23 54 0 0 chr11 20394388 20394425 -130389128 + AT_rich Low_complexity Low_complexity 1 37 0 305 283 11 0 chr11 20394841 20394933 -130388620 + (TA)n Simple_repeat Simple_repeat 1 93 0 275 305 66 26 chr11 20395267 20395418 -130388135 - MIR SINE MIR -10 252 96 399 333 47 18 chr11 20395473 20395644 -130387909 + MIR SINE MIR 87 262 0 351 259 27 27 chr11 20396718 20396830 -130386723 - MIR SINE MIR 0 262 151 406 287 32 55 chr11 20396857 20397026 -130386527 + MIR SINE MIR 33 197 -55 269 319 35 26 chr11 20397075 20397188 -130386365 - MIR SINE MIR -131 131 18 1124 231 101 53 chr11 20397536 20398059 -130385494 + L1MC4 LINE L1 7494 8041 -1 32 43 0 0 chr11 20398346 20398392 -130385161 + AT_rich Low_complexity Low_complexity 1 46 0 398 322 148 30 chr11 20398502 20398732 -130384821 + L2 LINE L2 3015 3271 -1 379 223 52 128 chr11 20399292 20399503 -130384050 - MIR SINE MIR -55 207 13 524 313 12 0 chr11 20400121 20400284 -130383269 - MIR3 SINE MIR -6 202 38 877 147 33 0 chr11 20400416 20400566 -130382987 - FRAM SINE Alu -21 155 1 379 237 237 11 chr11 20400695 20400866 -130382687 - MIR SINE MIR -47 215 8 243 276 17 0 chr11 20400943 20401001 -130382552 + L2 LINE L2 3246 3304 -9 804 255 43 38 chr11 20401126 20401361 -130382192 - MIR SINE MIR -13 249 14 238 211 0 18 chr11 20401434 20401491 -130382062 - MIR SINE MIR -137 125 70 563 197 39 16 chr11 20402485 20402612 -130380941 + L2 LINE L2 2925 3054 -259 516 245 185 26 chr11 20402751 20402902 -130380651 + MER5A DNA MER1_type 12 186 -3 180 323 31 42 chr11 20404254 20404350 -130379203 + MIR3 SINE MIR 3 97 -111 267 281 101 0 chr11 20404415 20404504 -130379049 - MER5B DNA MER1_type -73 105 8 557 310 67 17 chr11 20404536 20404775 -130378778 + MIR SINE MIR 2 252 -10 570 319 11 21 chr11 20405025 20405216 -130378337 - MER5A DNA MER1_type 0 189 1 516 245 117 36 chr11 20405968 20406164 -130377389 - MIR SINE MIR -16 246 35 656 146 0 173 chr11 20406919 20407145 -130376408 - MER53 DNA DNA -2 187 1 463 303 42 35 chr11 20407434 20407576 -130375977 - L2 LINE L2 -19 3253 3111 303 291 33 93 chr11 20407696 20407878 -130375675 + MIR SINE MIR 34 204 -58 662 221 126 63 chr11 20408036 20408060 -130375493 + MIR SINE MIR 8 29 -233 1853 93 0 37 chr11 20408060 20408329 -130375224 + AluSx SINE Alu 40 298 -14 662 221 126 63 chr11 20408329 20408526 -130375027 + MIR SINE MIR 29 243 -19 289 255 162 6 chr11 20408563 20408684 -130374869 - MIR SINE MIR -72 136 42 474 320 73 23 chr11 20409264 20409483 -130374070 - MIR SINE MIR -19 243 14 231 215 62 0 chr11 20409868 20409933 -130373620 + (ATGGTG)n Simple_repeat Simple_repeat 3 71 0 708 247 6 6 chr11 20409933 20410091 -130373462 - MIR SINE MIR -2 260 103 636 290 107 13 chr11 20410976 20411200 -130372353 + MIR SINE MIR 7 251 -11 458 269 157 56 chr11 20411497 20411694 -130371859 - MIR SINE MIR -6 256 40 264 279 35 35 chr11 20412691 20412777 -130370776 - MIR SINE MIR -149 113 28 361 303 99 25 chr11 20413357 20413519 -130370034 - L2 LINE L2 -22 3250 3077 536 313 35 23 chr11 20413581 20413837 -130369716 + MIR SINE MIR 4 262 0 1312 158 0 5 chr11 20415036 20415251 -130368302 + AluJb SINE Alu 84 297 -15 493 253 147 11 chr11 20415317 20415507 -130368046 - MIR SINE MIR -12 250 35 261 301 11 11 chr11 20415684 20415777 -130367776 + MER102a DNA MER1_type 237 329 -1 189 293 73 24 chr11 20416245 20416327 -130367226 - L2 LINE L2 -255 3017 2932 2363 50 3 7 chr11 20416334 20416634 -130366919 + SVA Other Other 1088 1386 0 721 245 35 49 chr11 20416757 20417011 -130366542 - MIR SINE MIR 0 262 16 4382 138 22 106 chr11 20417204 20418188 -130365365 - L1MA9 LINE L1 -37 6275 5374 1032 219 26 22 chr11 20418243 20418471 -130365082 + MIR SINE MIR 20 248 -14 249 293 129 10 chr11 20419087 20419254 -130364299 + MIR3 SINE MIR 5 149 -59 552 273 127 10 chr11 20420053 20420258 -130363295 - MIR SINE MIR -14 248 20 326 284 90 40 chr11 20420925 20421126 -130362427 - L1MC/D LINE L1 -2044 5764 5554 624 178 178 6 chr11 20421340 20421503 -130362050 + ORSL DNA AcHobo 84 274 -1 2336 123 9 6 chr11 20421638 20421972 -130361581 - MER1B DNA MER1_type -2 335 1 327 211 11 74 chr11 20422082 20422177 -130361376 - MIR SINE MIR -111 151 63 3478 43 0 2 chr11 20422949 20423366 -130360187 - L1PA4 LINE L1 -3 6152 5737 390 243 112 33 chr11 20423366 20423518 -130360035 - MIR SINE MIR -19 243 80 181 297 47 0 chr11 20424298 20424362 -130359191 - MIR SINE MIR -96 166 100 259 282 224 0 chr11 20424488 20424573 -130358980 + MIR SINE MIR 48 151 -111 465 304 35 0 chr11 20424578 20424693 -130358860 + L2 LINE L2 3154 3272 0 198 279 101 38 chr11 20424698 20424777 -130358776 + MIR SINE MIR 172 255 -7 362 301 49 24 chr11 20424941 20425064 -130358489 - MIR3 SINE MIR -76 132 7 394 320 75 0 chr11 20426669 20426816 -130356737 - MIR3 SINE MIR -9 199 42 820 261 66 33 chr11 20426903 20427024 -130356529 - MIR SINE MIR -12 250 134 959 191 48 52 chr11 20427024 20427234 -130356319 - MER63A DNA MER1_type 0 210 2 820 261 66 33 chr11 20427234 20427353 -130356200 - MIR SINE MIR -128 134 2 812 291 169 0 chr11 20427532 20427876 -130355677 + L2 LINE L2 2863 3264 -49 299 218 23 23 chr11 20428516 20428603 -130354950 - L1ME4a LINE L1 -71 6050 5964 474 288 66 20 chr11 20428618 20428816 -130354737 - L1ME4a LINE L1 -212 5909 5703 1688 197 41 19 chr11 20428894 20429260 -130354293 + MLT1A2 LTR MaLR 1 374 0 276 182 0 0 chr11 20429322 20429377 -130354176 + L2 LINE L2 2920 2974 -298 230 146 0 0 chr11 20429434 20429475 -130354078 + HsTC2 DNA Tc2 26 66 -1832 224 296 63 101 chr11 20429576 20429735 -130353818 + L2 LINE L2 3068 3220 -52 195 269 203 11 chr11 20430400 20430582 -130352971 - L2 LINE L2 -189 3083 2867 356 260 127 27 chr11 20431232 20431382 -130352171 - MIR SINE MIR -57 205 41 1530 204 19 22 chr11 20431475 20431788 -130351765 - MLT1C LTR MaLR 0 467 156 2010 156 26 164 chr11 20431806 20432337 -130351216 - LTR32 LTR ERVL 0 471 14 524 194 97 8 chr11 20432336 20432460 -130351093 - MLT1C LTR MaLR -327 140 6 * 264 59 0 0 chr11 20433049 20433083 -130350470 + (GGCTG)n Simple_repeat Simple_repeat 1 34 0 409 225 0 34 chr11 20433537 20433626 -130349927 + MIR SINE MIR 65 150 -112 813 260 53 13 chr11 20433747 20433998 -130349555 - MIR SINE MIR 0 262 13 218 238 131 24 chr11 20434105 20434189 -130349364 - MIR SINE MIR -64 198 106 418 273 234 22 chr11 20434201 20434556 -130348997 - L2 LINE L2 -20 3293 2864 2122 69 55 3 chr11 20435145 20435436 -130348117 - AluY SINE Alu -4 307 2 199 257 43 29 chr11 20435439 20435509 -130348044 - MIR3 SINE MIR -24 184 114 651 295 33 33 chr11 20435652 20435893 -130347660 + MIR SINE MIR 22 262 0 899 287 124 27 chr11 20437259 20437663 -130345890 - L2 LINE L2 0 3313 2871 593 328 110 58 chr11 20437814 20438015 -130345538 + L2 LINE L2 2469 2658 -655 2010 125 0 3 chr11 20438015 20438319 -130345234 + AluSx SINE Alu 1 303 -9 593 328 110 58 chr11 20438319 20438664 -130344889 + L2 LINE L2 2658 2983 -330 2231 116 0 0 chr11 20438664 20438967 -130344586 - AluSc SINE Alu -6 303 1 593 328 110 58 chr11 20438967 20439217 -130344336 + L2 LINE L2 2983 3312 -1 222 136 0 0 chr11 20439831 20439875 -130343678 + (T)n Simple_repeat Simple_repeat 1 44 0 216 200 11 89 chr11 20440589 20440679 -130342874 + MIR SINE MIR 123 205 -57 1059 277 80 58 chr11 20440788 20441287 -130342266 + L2 LINE L2 2302 2811 -503 308 160 0 0 chr11 20441287 20441337 -130342216 - MER58 DNA MER1_type -1 2419 2370 341 201 7 45 chr11 20441481 20441635 -130341918 + CT-rich Low_complexity Low_complexity 1 148 0 433 232 9 64 chr11 20441640 20441766 -130341787 - MER58 DNA MER1_type -115 100 1 788 287 86 41 chr11 20441768 20442256 -130341297 + L2 LINE L2 2804 3313 0 31 0 0 0 chr11 20442276 20442307 -130341246 + AT_rich Low_complexity Low_complexity 1 31 0 344 277 118 56 chr11 20443497 20443678 -130339875 + MIR SINE MIR 24 212 -50 658 342 30 0 chr11 20443752 20443983 -130339570 - MIR SINE MIR -3 259 22 379 301 139 5 chr11 20444591 20444800 -130338753 + L3 LINE CR1 1083 1319 -258 542 313 57 9 chr11 20444841 20445052 -130338501 + MIR SINE MIR 9 229 -33 331 355 16 16 chr11 20445107 20445231 -130338322 + MIR SINE MIR 22 145 -63 28 29 0 0 chr11 20446406 20446441 -130337112 + AT_rich Low_complexity Low_complexity 1 35 0 301 223 43 53 chr11 20447192 20447286 -130336267 + MIR3 SINE MIR 111 203 -5 181 372 77 0 chr11 20447299 20447377 -130336176 - L2 LINE L2 -40 3232 3149 239 325 7 22 chr11 20447554 20447687 -130335866 - L2 LINE L2 -248 3024 2896 180 0 0 0 chr11 20447975 20447995 -130335558 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 214 311 168 31 chr11 20449129 20449290 -130334263 - MIR3 SINE MIR -15 193 11 193 371 57 17 chr11 20449943 20450118 -130333435 + L2 LINE L2 2558 2739 -575 236 329 0 0 chr11 20450198 20450283 -130333270 + L2 LINE L2 2904 2988 -284 1669 167 4 4 chr11 20450371 20450646 -130332907 - AluJo SINE Alu -37 275 1 23 0 0 0 chr11 20451351 20451374 -130332179 + AT_rich Low_complexity Low_complexity 1 23 0 838 274 160 30 chr11 20451641 20452176 -130331377 - L2 LINE L2 -5 3308 2692 472 111 20 0 chr11 20452747 20452846 -130330707 + (TG)n Simple_repeat Simple_repeat 1 101 0 24 67 0 0 chr11 20453255 20453300 -130330253 + GC_rich Low_complexity Low_complexity 1 45 0 27 49 0 0 chr11 20453454 20453495 -130330058 + GC_rich Low_complexity Low_complexity 1 41 0 313 327 140 0 chr11 20454464 20454614 -130328939 + MIR SINE MIR 92 262 0 304 40 40 0 chr11 20454663 20454713 -130328840 + (CAAAAA)n Simple_repeat Simple_repeat 1 52 0 194 188 0 0 chr11 20455732 20455764 -130327789 + MIR SINE MIR 48 79 -183 319 271 83 36 chr11 20456678 20456926 -130326627 + MIR3 SINE MIR 1 258 -4 315 340 95 0 chr11 20456970 20457045 -130326508 + L1ME4a LINE L1 5960 6026 -95 248 0 31 0 chr11 20457045 20457077 -130326476 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 315 340 95 0 chr11 20457077 20457148 -130326405 + L1ME4a LINE L1 6026 6120 -1 629 246 120 0 chr11 20457175 20457342 -130326211 - MIR SINE MIR -2 260 74 789 139 0 0 chr11 20457946 20458075 -130325478 - L1MA9 LINE L1 -5 6307 6179 668 278 65 37 chr11 20459775 20460020 -130323533 + MIR SINE MIR 11 262 0 266 270 153 31 chr11 20460076 20460272 -130323281 - L2 LINE L2 -52 3261 3042 479 123 0 0 chr11 20460277 20460342 -130323211 + AluS SINE Alu 2 66 -247 781 237 116 5 chr11 20460557 20460764 -130322789 + MIR SINE MIR 19 248 -14 189 0 0 0 chr11 20460767 20460788 -130322765 + (CAT)n Simple_repeat Simple_repeat 3 23 0 252 333 33 25 chr11 20461048 20461168 -130322385 - MIR3 SINE MIR -7 201 81 213 305 17 0 chr11 20462252 20462311 -130321242 + L2 LINE L2 3235 3294 -19 784 177 0 109 chr11 20462732 20462924 -130320629 + FAM SINE Alu 4 174 -1 1543 164 0 77 chr11 20462975 20463299 -130320254 - AluJo SINE Alu -11 301 3 270 302 70 0 chr11 20463431 20463517 -130320036 + MIR SINE MIR 84 175 -87 833 310 162 29 chr11 20463915 20464004 -130319549 + L2 LINE L2 2323 2399 -873 1018 195 37 19 chr11 20464004 20464219 -130319334 - MER20 DNA MER1_type 0 219 1 833 310 162 29 chr11 20464219 20464970 -130318583 + L2 LINE L2 2399 3272 0 243 294 0 47 chr11 20465084 20465169 -130318384 + L2 LINE L2 3233 3313 0 235 263 0 18 chr11 20465384 20465441 -130318112 + L2 LINE L2 3216 3271 -1 432 248 33 33 chr11 20466132 20466253 -130317300 - MIR3 SINE MIR -3 205 85 203 262 0 33 chr11 20466378 20466439 -130317114 + MIR SINE MIR 204 262 0 409 288 135 6 chr11 20466445 20466608 -130316945 + MIR SINE MIR 67 250 -12 911 246 43 17 chr11 20466807 20467061 -130316492 - MIR SINE MIR -10 252 1 2247 103 7 0 chr11 20468812 20469122 -130314431 + AluSx SINE Alu 1 312 0 604 305 124 33 chr11 20469406 20470069 -130313484 + L2 LINE L2 2551 3313 0 210 398 11 0 chr11 20470893 20470981 -130312572 - MIR SINE MIR -90 172 84 543 250 69 5 chr11 20471196 20471400 -130312153 + MER113 DNA MER1_type? 1 217 -304 248 215 28 93 chr11 20472005 20472112 -130311441 - LTR33A LTR ERVL -20 503 404 324 293 162 59 chr11 20472311 20472533 -130311020 - MIR SINE MIR -14 248 4 418 276 77 46 chr11 20473558 20473754 -130309799 + MIR SINE MIR 7 208 -54 308 289 206 39 chr11 20474545 20474725 -130308828 - MIR SINE MIR -33 229 20 405 167 0 0 chr11 20476558 20476636 -130306917 + (TG)n Simple_repeat Simple_repeat 2 79 0 858 262 34 9 chr11 20477568 20477801 -130305752 + MIR SINE MIR 9 247 -15 455 309 216 24 chr11 20477864 20478239 -130305314 + L3 LINE CR1 1128 1574 -3 805 126 0 0 chr11 20478497 20478616 -130304937 + FRAM SINE Alu 49 167 -9 425 222 51 8 chr11 20479381 20479498 -130304055 + MIR SINE MIR 84 205 -57 210 118 0 0 chr11 20480530 20480564 -130302989 + (TCCA)n Simple_repeat Simple_repeat 3 36 0 246 264 94 0 chr11 20480790 20480896 -130302657 - L2 LINE L2 -324 2948 2833 385 281 22 30 chr11 20481668 20481803 -130301750 - MIR SINE MIR -78 184 51 318 356 53 0 chr11 20482403 20482535 -130301018 + MIR SINE MIR 9 147 -115 342 263 39 38 chr11 20482790 20482947 -130300606 + MER5A DNA MER1_type 12 182 -7 395 248 206 7 chr11 20483925 20484066 -130299487 + MIR SINE MIR 77 245 -17 22 35 0 0 chr11 20484407 20484436 -130299117 + AT_rich Low_complexity Low_complexity 1 29 0 214 250 0 0 chr11 20485261 20485305 -130298248 + MER5B DNA MER1_type 5 48 -130 5336 160 90 52 chr11 20485317 20486595 -130296958 - L1MC3 LINE L1 0 7785 6460 318 267 124 29 chr11 20486829 20486934 -130296619 + L2 LINE L2 3155 3269 -3 368 238 0 12 chr11 20487727 20487807 -130295746 - L2 LINE L2 -12 3301 3223 287 250 16 0 chr11 20487854 20487918 -130295635 - MER5A DNA MER1_type -1 188 124 663 169 0 66 chr11 20488012 20488148 -130295405 - MER5A DNA MER1_type -54 135 9 460 288 122 56 chr11 20488139 20488459 -130295094 + L2 LINE L2 2972 3312 -1 * 761 181 0 8 chr11 20490518 20490651 -130292902 - FLAM_A SINE Alu 0 133 2 186 306 134 59 chr11 20491563 20491749 -130291804 + MIR SINE MIR 42 241 -21 405 250 40 32 chr11 20492386 20492510 -130291043 - MIR SINE MIR -44 218 94 279 0 0 0 chr11 20494119 20494150 -130289403 + (T)n Simple_repeat Simple_repeat 1 31 0 1766 197 82 8 chr11 20494178 20494568 -130288985 + MER63B DNA MER1_type 18 436 0 352 345 23 0 chr11 20494791 20494965 -130288588 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 272 285 80 15 chr11 20495176 20495313 -130288240 - L2 LINE L2 -216 3056 2911 382 248 118 19 chr11 20495565 20495726 -130287827 - MIR SINE MIR -6 256 80 303 262 71 0 chr11 20496529 20496613 -130286940 + MIR SINE MIR 64 153 -109 294 281 0 0 chr11 20496609 20496673 -130286880 - L2 LINE L2 -2 3311 3248 * 2552 46 0 0 chr11 20496868 20497170 -130286383 + AluY SINE Alu 1 302 -9 504 261 119 17 chr11 20497809 20497985 -130285568 + MIR SINE MIR 35 228 -34 378 266 184 37 chr11 20498004 20498222 -130285331 - MIR SINE MIR 0 262 13 1779 149 10 3 chr11 20498945 20499099 -130284454 - AluJb SINE Alu -22 290 132 2002 132 0 0 chr11 20499099 20499395 -130284158 - AluSq SINE Alu -17 296 1 1779 149 10 3 chr11 20499395 20499528 -130284025 - AluJb SINE Alu -180 132 1 1242 77 48 0 chr11 20499644 20499812 -130283741 + L1PA7 LINE L1 5979 6154 0 469 268 147 21 chr11 20499985 20500175 -130283378 - MIR SINE MIR -2 260 47 210 274 69 49 chr11 20500386 20500488 -130283065 + MIR SINE MIR 80 183 -79 2249 106 3 0 chr11 20500898 20501209 -130282344 + AluSx SINE Alu 1 312 0 402 247 11 33 chr11 20502624 20502806 -130280747 + CT-rich Low_complexity Low_complexity 1 178 0 740 78 11 78 chr11 20502806 20502997 -130280556 + (TTTCC)n Simple_repeat Simple_repeat 3 180 0 516 178 17 46 chr11 20502963 20503137 -130280416 + CT-rich Low_complexity Low_complexity 2 170 0 * 422 132 0 49 chr11 20503122 20503266 -130280287 + (TTTC)n Simple_repeat Simple_repeat 1 137 0 * 314 131 49 16 chr11 20503266 20503327 -130280226 + CT-rich Low_complexity Low_complexity 5 67 0 940 219 131 8 chr11 20503327 20503564 -130279989 - AluSg SINE Alu -44 266 1 554 335 27 0 chr11 20503612 20503800 -130279753 - MIR SINE MIR -16 246 54 612 213 67 107 chr11 20505048 20505273 -130278280 - MER58A DNA MER1_type -8 216 1 201 233 0 96 chr11 20505290 20505363 -130278190 - MIR SINE MIR -111 151 86 37 0 0 0 chr11 20505496 20505533 -130278020 + AT_rich Low_complexity Low_complexity 1 37 0 994 154 24 172 chr11 20505627 20505965 -130277588 + AluJo SINE Alu 3 290 -12 1841 141 36 19 chr11 20505981 20506342 -130277211 - L1MB4 LINE L1 -10 6170 5804 1086 155 5 5 chr11 20506342 20506529 -130277024 - AluJb SINE Alu -63 249 63 450 244 126 0 chr11 20507310 20507445 -130276108 - MIR SINE MIR -2 260 109 499 297 77 11 chr11 20507538 20507720 -130275833 - MIR SINE MIR -12 250 57 2199 112 0 0 chr11 20507746 20508050 -130275503 + AluSg SINE Alu 1 304 -6 923 230 75 2 chr11 20508182 20508396 -130275157 + MIR SINE MIR 30 256 -6 316 221 0 133 chr11 20508398 20508511 -130275042 - L2 LINE L2 -19 3294 3197 204 291 0 0 chr11 20511356 20511383 -130272170 + CT-rich Low_complexity Low_complexity 2 28 -28 2710 222 42 14 chr11 20511383 20511960 -130271593 - MLT1E LTR MaLR 0 593 1 204 291 0 0 chr11 20511960 20511987 -130271566 + CT-rich Low_complexity Low_complexity 27 56 0 531 308 108 0 chr11 20511987 20512201 -130271352 - MIR SINE MIR -25 237 1 405 250 66 22 chr11 20512747 20512883 -130270670 + MER117 DNA MER1_type 46 187 -10 323 279 58 0 chr11 20513444 20513530 -130270023 - L1MC4 LINE L1 -1337 6705 6615 26 74 0 0 chr11 20513541 20513595 -130269958 + AT_rich Low_complexity Low_complexity 1 54 0 208 337 12 24 chr11 20513791 20513874 -130269679 + L2 LINE L2 3175 3256 -16 440 333 75 0 chr11 20514042 20514078 -130269475 - L3 LINE CR1 -17 1560 1528 2728 13 0 0 chr11 20514078 20514384 -130269169 + AluYb8 SINE Alu 1 306 -12 440 333 75 0 chr11 20514384 20514521 -130269032 - L3 LINE CR1 -49 1528 1374 2014 187 17 3 chr11 20514522 20514880 -130268673 - MLT1A1 LTR MaLR -2 363 1 2836 239 89 25 chr11 20514945 20515947 -130267606 + L1MC4 LINE L1 6977 8042 0 261 331 52 15 chr11 20516138 20516274 -130267279 - L2 LINE L2 -217 3055 2915 1994 139 3 0 chr11 20516424 20516725 -130266828 - AluSx SINE Alu -10 302 1 250 343 4 27 chr11 20517094 20517237 -130266316 + GA-rich Low_complexity Low_complexity 1 139 0 222 196 130 0 chr11 20517359 20517405 -130266148 + MIR SINE MIR 67 118 -90 23 0 0 0 chr11 20517945 20517968 -130265585 + AT_rich Low_complexity Low_complexity 1 23 0 565 252 0 8 chr11 20518630 20518749 -130264804 - L2 LINE L2 -5 3308 3191 810 276 53 16 chr11 20519633 20519879 -130263674 - MIR SINE MIR -1 261 7 1029 171 151 0 chr11 20522252 20522457 -130261096 - MER46A DNA MER2_type 0 236 1 202 140 0 60 chr11 20522590 20522640 -130260913 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 328 296 103 64 chr11 20523661 20523972 -130259581 - L2 LINE L2 -6 3266 2944 487 292 62 20 chr11 20525293 20525475 -130258078 + MIR SINE MIR 13 197 -56 410 260 16 55 chr11 20525517 20525644 -130257909 - MIR SINE MIR -4 258 137 194 256 0 0 chr11 20525644 20525683 -130257870 + MIR SINE MIR 222 260 -2 376 339 57 23 chr11 20526346 20526523 -130257030 + MIR SINE MIR 77 259 -3 259 361 57 0 chr11 20526736 20526858 -130256695 + MIR SINE MIR 85 213 -49 * 538 317 100 9 chr11 20526830 20527060 -130256493 - MIR SINE MIR -2 260 10 233 351 133 0 chr11 20527729 20527917 -130255636 + L2 LINE L2 2730 2942 -372 382 259 0 36 chr11 20528605 20528717 -130254836 - MIR SINE MIR -38 224 117 1012 240 9 5 chr11 20528862 20529083 -130254470 - MIR SINE MIR -38 224 3 464 216 151 14 chr11 20529239 20529378 -130254175 + MIR SINE MIR 23 180 -82 2761 138 50 44 chr11 20529522 20530024 -130253529 + MLT1D LTR MaLR 1 505 0 182 284 14 108 chr11 20530545 20530619 -130252934 + L2 LINE L2 3200 3266 -6 817 237 30 0 chr11 20530871 20531040 -130252513 - MER5A DNA MER1_type -5 184 11 1343 135 45 9 chr11 20531203 20531425 -130252128 - MER30 DNA MER1_type 0 230 1 268 271 169 25 chr11 20531617 20531735 -130251818 + L2 LINE L2 3134 3268 -4 466 165 82 135 chr11 20532284 20532454 -130251099 + MER102a DNA MER1_type 169 329 -1 472 222 61 83 chr11 20532826 20533006 -130250547 + MIR SINE MIR 49 224 -38 331 209 0 15 chr11 20533070 20533137 -130250416 - MIR SINE MIR -109 153 88 452 145 0 0 chr11 20533827 20533903 -130249650 + MER116 DNA Mariner 2 77 -3 221 269 15 30 chr11 20534373 20534440 -130249113 + MIR SINE MIR 189 254 -8 237 295 48 60 chr11 20535192 20535358 -130248195 + L2 LINE L2 3150 3313 0 249 176 0 0 chr11 20535559 20535610 -130247943 - L1MA9 LINE L1 -71 6241 6191 2666 164 33 35 chr11 20535624 20535657 -130247896 - L1MA9 LINE L1 -232 6080 6048 2273 83 7 0 chr11 20535657 20535959 -130247594 - AluY SINE Alu -7 304 1 2666 164 33 35 chr11 20535959 20536444 -130247109 - L1MA9 LINE L1 -264 6048 5563 331 365 40 0 chr11 20536756 20536882 -130246671 - MIR SINE MIR -45 217 87 5579 27 0 0 chr11 20536943 20537571 -130245982 - SVA Other Other 0 1386 759 1335 89 11 37 chr11 20538186 20538649 -130244904 - SVA Other Other -520 866 549 5845 60 20 50 chr11 20538665 20539553 -130244000 - SVA Other Other -520 866 5 234 0 0 0 chr11 20539582 20539608 -130243945 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 404 317 124 16 chr11 20539965 20540151 -130243402 - MIR SINE MIR -34 228 23 219 330 90 50 chr11 20541783 20541983 -130241570 + L2 LINE L2 2837 3044 -228 * 443 219 26 35 chr11 20541968 20542082 -130241471 - L2 LINE L2 0 3313 3201 551 288 15 8 chr11 20542259 20542391 -130241162 + L2 LINE L2 3140 3272 0 257 248 46 46 chr11 20544438 20544547 -130239006 + MIR SINE MIR 31 139 -69 180 244 22 0 chr11 20544589 20544634 -130238919 + L2 LINE L2 3227 3272 0 981 182 22 11 chr11 20544655 20544836 -130238717 - MER20 DNA MER1_type 0 219 37 28 0 0 0 chr11 20545462 20545490 -130238063 + AT_rich Low_complexity Low_complexity 1 28 0 201 221 70 58 chr11 20545810 20545896 -130237657 + MIR SINE MIR 48 134 -74 491 326 72 23 chr11 20549111 20549332 -130234221 - MIR SINE MIR -6 256 25 677 250 0 7 chr11 20550699 20550847 -130232706 - MIR SINE MIR -13 249 103 470 330 95 25 chr11 20551617 20551932 -130231621 - L2 LINE L2 0 3272 2936 234 239 188 26 chr11 20552812 20552929 -130230624 + MIR3 SINE MIR 6 141 -67 1294 182 182 36 chr11 20553226 20553355 -130230198 + L1MB7 LINE L1 5744 5853 -331 1993 142 0 0 chr11 20553355 20553650 -130229903 + AluSx SINE Alu 1 295 -17 1294 182 182 36 chr11 20553650 20553671 -130229882 + L1MB7 LINE L1 5853 5870 -314 2417 124 34 0 chr11 20553671 20554025 -130229528 - MER47A DNA MER2_type 0 366 1 1294 182 182 36 chr11 20554025 20554257 -130229296 + L1MB7 LINE L1 5870 6183 -1 1971 103 0 11 chr11 20554494 20554806 -130228747 - AluSc SINE Alu 0 309 1 385 293 36 48 chr11 20554818 20554985 -130228568 - MIR SINE MIR -66 196 32 186 43 0 0 chr11 20555364 20555387 -130228166 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 207 206 16 0 chr11 20555401 20555464 -130228089 + (TA)n Simple_repeat Simple_repeat 1 64 0 25 0 0 0 chr11 20555492 20555517 -130228036 + AT_rich Low_complexity Low_complexity 1 25 0 672 273 150 0 chr11 20555546 20555766 -130227787 + MIR SINE MIR 10 262 0 2494 56 0 0 chr11 20555948 20556252 -130227301 - AluY SINE Alu -7 304 1 401 278 90 14 chr11 20556257 20556401 -130227152 + MIR3 SINE MIR 47 201 -7 318 257 29 73 chr11 20556594 20556730 -130226823 - MER94 DNA DNA -4 130 1 427 290 126 67 chr11 20556806 20557044 -130226509 - MIR SINE MIR -1 261 10 180 97 0 0 chr11 20558409 20558440 -130225113 + (CAG)n Simple_repeat Simple_repeat 2 32 0 485 308 156 12 chr11 20560081 20560331 -130223222 - L2 LINE L2 0 3313 3028 837 361 58 5 chr11 20560523 20560919 -130222634 - L2 LINE L2 -523 2791 2375 225 0 0 0 chr11 20563262 20563287 -130220266 + (TTG)n Simple_repeat Simple_repeat 2 26 0 660 251 126 13 chr11 20563588 20563819 -130219734 - MIR SINE MIR -3 259 3 324 119 0 68 chr11 20564383 20564442 -130219111 - AluJo SINE Alu -4 298 244 1289 174 58 0 chr11 20564529 20564753 -130218800 - AluJo SINE Alu -69 243 7 395 274 125 6 chr11 20565863 20566031 -130217522 + MIR SINE MIR 8 195 -67 26 0 0 0 chr11 20566038 20566064 -130217489 + AT_rich Low_complexity Low_complexity 1 26 0 205 299 0 0 chr11 20568647 20568714 -130214839 - MIR SINE MIR -109 153 87 180 0 0 0 chr11 20570439 20570459 -130213094 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1288 152 0 0 chr11 20570462 20570646 -130212907 - AluSg/x SINE Alu -34 278 95 207 267 17 17 chr11 20572279 20572339 -130211214 + CT-rich Low_complexity Low_complexity 5 64 0 243 170 0 0 chr11 20572496 20572543 -130211010 + (TATATG)n Simple_repeat Simple_repeat 5 51 0 414 250 38 23 chr11 20572606 20572738 -130210815 - MIR SINE MIR -104 158 25 2364 78 3 0 chr11 20573217 20573511 -130210042 - AluSq SINE Alu -18 295 1 1450 130 160 37 chr11 20573550 20573858 -130209695 - AluSx SINE Alu 0 341 1 303 288 120 0 chr11 20573877 20574002 -130209551 - MIR SINE MIR -76 186 47 1338 169 46 11 chr11 20574657 20574918 -130208635 - L1MB2 LINE L1 -11 6160 5891 363 126 0 13 chr11 20575053 20575120 -130208433 - L1MB3 LINE L1 -296 5887 5825 5304 23 5 2 chr11 20575264 20575874 -130207679 + L1PA4 LINE L1 5543 6154 -1 22 0 0 0 chr11 20576365 20576387 -130207166 + AT_rich Low_complexity Low_complexity 1 22 0 759 238 117 92 chr11 20576708 20577296 -130206257 - L1MC4a LINE L1 -27 6094 5492 287 323 132 34 chr11 20577996 20578231 -130205322 - L2 LINE L2 0 3272 3015 209 329 13 0 chr11 20578840 20578916 -130204637 + MIR SINE MIR 24 100 -162 240 357 83 24 chr11 20579531 20579699 -130203854 + MER5A DNA MER1_type 8 185 -4 1968 136 0 0 chr11 20579747 20580019 -130203534 + AluSx SINE Alu 2 273 -39 250 278 44 22 chr11 20580061 20580151 -130203402 + MIR SINE MIR 159 250 -12 516 283 67 6 chr11 20582729 20582909 -130200644 - L2 LINE L2 -18 3295 3105 648 278 22 40 chr11 20583177 20583404 -130200149 + L3 LINE CR1 1342 1564 -13 1477 243 73 10 chr11 20584554 20584949 -130198604 - MLT1H LTR MaLR -129 420 1 433 341 12 0 chr11 20585426 20585590 -130197963 + MIR SINE MIR 27 192 -70 948 165 60 15 chr11 20586969 20587169 -130196384 + MER3 DNA MER1_type 1 209 0 1368 137 68 45 chr11 20587238 20587530 -130196023 + L1MB7 LINE L1 5886 6184 0 457 294 64 43 chr11 20588503 20588738 -130194815 - MIR SINE MIR -17 245 6 213 333 0 13 chr11 20588766 20588841 -130194712 - L2 LINE L2 -18 3295 3222 2151 112 7 10 chr11 20589059 20589363 -130194190 + AluSx SINE Alu 1 303 -9 261 328 134 18 chr11 20589732 20589903 -130193650 - L2 LINE L2 -185 3087 2897 210 277 0 0 chr11 20589982 20590029 -130193524 + L2 LINE L2 3150 3196 -76 184 304 14 14 chr11 20590060 20590129 -130193424 - MIR3 SINE MIR -134 74 6 284 238 114 19 chr11 20592126 20592231 -130191322 + MIR SINE MIR 17 131 -77 733 262 30 35 chr11 20592469 20592671 -130190882 - MER63A DNA MER1_type 0 210 10 2893 7 0 0 chr11 20593020 20593326 -130190227 - AluYb8 SINE Alu -12 306 1 204 200 0 0 chr11 20593439 20593484 -130190069 + CT-rich Low_complexity Low_complexity 3 47 0 431 319 57 60 chr11 20594014 20594349 -130189204 + L2 LINE L2 2931 3264 -8 785 230 133 0 chr11 20594388 20594614 -130188939 + MIR SINE MIR 5 260 -2 552 245 15 2 chr11 20595154 20595338 -130188215 - MER58A DNA MER1_type 0 224 5 2172 97 10 17 chr11 20596100 20596399 -130187154 - AluSx SINE Alu -15 297 1 345 283 9 0 chr11 20596467 20596573 -130186980 + MIR SINE MIR 47 153 -109 204 273 0 0 chr11 20597451 20597495 -130186058 + L2 LINE L2 3232 3275 -38 2047 136 3 3 chr11 20598334 20598628 -130184925 + AluJb SINE Alu 1 294 -18 394 257 63 48 chr11 20598644 20598778 -130184775 + MIR SINE MIR 52 192 -70 2106 110 3 3 chr11 20598778 20599069 -130184484 - AluSg SINE Alu -19 291 1 394 257 63 48 chr11 20599069 20599140 -130184413 + MIR SINE MIR 192 260 -2 609 236 28 11 chr11 20600198 20600376 -130183177 + MIR SINE MIR 81 261 -1 418 288 7 29 chr11 20600973 20601112 -130182441 - MER5A DNA MER1_type -3 186 51 335 341 18 6 chr11 20601109 20601276 -130182277 + MIR3 SINE MIR 40 208 0 * 281 387 7 7 chr11 20601272 20601414 -130182139 - L3 LINE CR1 -506 1071 930 * 501 231 18 47 chr11 20601765 20601934 -130181619 - MER103 DNA DNA 0 166 3 201 39 0 0 chr11 20602778 20602804 -130180749 + (A)n Simple_repeat Simple_repeat 1 26 0 3324 203 43 17 chr11 20603444 20603951 -130179602 - L1M4 LINE L1 -690 5484 4954 2348 107 3 0 chr11 20603951 20604250 -130179303 + AluSg SINE Alu 1 300 -10 3324 203 43 17 chr11 20604250 20604633 -130178920 - L1M4 LINE L1 -1220 4954 4583 180 77 0 0 chr11 20605120 20605146 -130178407 + (A)n Simple_repeat Simple_repeat 1 26 0 2092 106 58 0 chr11 20605782 20606074 -130177479 + AluSq SINE Alu 1 309 -4 411 133 0 0 chr11 20606108 20606168 -130177385 + AluS SINE Alu 220 279 -31 266 0 29 0 chr11 20606171 20606205 -130177348 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 307 210 156 70 chr11 20606208 20606394 -130177159 - MER112 DNA MER1_type -57 203 2 284 243 63 18 chr11 20606620 20606731 -130176822 + MER113 DNA MER1_type? 1 116 -405 290 323 65 0 chr11 20607213 20607337 -130176216 - MIR3 SINE MIR -13 195 64 1707 141 53 47 chr11 20607455 20607754 -130175799 + AluSx SINE Alu 1 301 -11 213 302 63 107 chr11 20608385 20608590 -130174963 + L2 LINE L2 3027 3222 -50 529 236 52 35 chr11 20608996 20609170 -130174383 + L2 LINE L2 3118 3294 -19 329 257 37 37 chr11 20609492 20609601 -130173952 + MIR SINE MIR 39 147 -61 321 89 0 0 chr11 20610719 20610764 -130172789 + (A)n Simple_repeat Simple_repeat 1 45 0 2099 113 58 0 chr11 20610810 20611101 -130172452 - AluSx SINE Alu -4 308 1 219 222 0 48 chr11 20612173 20612236 -130171317 + GA-rich Low_complexity Low_complexity 4 63 0 24 0 0 0 chr11 20613150 20613174 -130170379 + AT_rich Low_complexity Low_complexity 1 24 0 1943 130 0 34 chr11 20614329 20614652 -130168901 - AluSx SINE Alu 0 312 1 295 261 222 68 chr11 20615206 20615339 -130168214 - MIR SINE MIR -48 214 46 2014 123 7 0 chr11 20615339 20615639 -130167914 + AluSx SINE Alu 1 302 -10 295 261 222 68 chr11 20615639 20615681 -130167872 - MIR SINE MIR -216 46 12 250 180 90 130 chr11 20615692 20615792 -130167761 + MIR3 SINE MIR 98 193 -15 412 321 27 43 chr11 20616000 20616184 -130167369 - MIR SINE MIR -62 200 20 237 309 118 55 chr11 20616409 20616797 -130166756 - L2 LINE L2 -210 3062 2623 553 295 62 21 chr11 20616797 20617122 -130166431 - MER102b DNA MER1_type -2 339 2 237 309 118 55 chr11 20617122 20617311 -130166242 - L2 LINE L2 -649 2623 2447 286 244 24 24 chr11 20618386 20618468 -130165085 + CT-rich Low_complexity Low_complexity 4 85 0 28 0 0 0 chr11 20618737 20618765 -130164788 + AT_rich Low_complexity Low_complexity 1 28 0 300 294 207 17 chr11 20620177 20620476 -130163077 - L3 LINE CR1 -69 1508 1153 391 279 196 36 chr11 20620857 20621076 -130162477 - MIR SINE MIR -7 255 2 1694 155 14 7 chr11 20621188 20621478 -130162075 + AluJo SINE Alu 3 294 -18 21 36 0 0 chr11 20622318 20622346 -130161207 + AT_rich Low_complexity Low_complexity 1 28 0 2060 95 0 11 chr11 20622399 20622707 -130160846 + AluSx SINE Alu 1 305 0 641 103 5 82 chr11 20622890 20623084 -130160469 + (TTTCC)n Simple_repeat Simple_repeat 2 180 0 536 189 5 43 chr11 20623076 20623261 -130160292 + CT-rich Low_complexity Low_complexity 3 180 0 * 356 125 0 38 chr11 20623272 20623352 -130160201 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 647 85 40 57 chr11 20623353 20623530 -130160023 + CT-rich Low_complexity Low_complexity 5 178 0 357 126 0 35 chr11 20623633 20623720 -130159833 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 314 131 49 16 chr11 20623720 20623781 -130159772 + CT-rich Low_complexity Low_complexity 5 67 0 940 219 131 8 chr11 20623781 20624018 -130159535 - AluSg SINE Alu -44 266 1 553 335 27 0 chr11 20624066 20624254 -130159299 - MIR SINE MIR -16 246 54 297 315 102 0 chr11 20624626 20624734 -130158819 - L2 LINE L2 0 3272 3154 1961 98 0 32 chr11 20626453 20626738 -130156815 - AluSc SINE Alu -13 296 21 705 305 119 40 chr11 20627767 20628239 -130155314 + L2 LINE L2 2804 3312 -1 282 315 37 9 chr11 20628259 20628367 -130155186 + MIR3 SINE MIR 93 203 -5 248 287 75 21 chr11 20628434 20628528 -130155025 + MIR3 SINE MIR 96 194 -14 22 0 0 0 chr11 20628621 20628643 -130154910 + AT_rich Low_complexity Low_complexity 1 22 0 750 251 6 12 chr11 20628653 20628824 -130154729 - MIR SINE MIR -29 233 64 3906 128 63 3 chr11 20629051 20629667 -130153886 - MER39B LTR ERV1 0 653 1 185 309 0 18 chr11 20630330 20630385 -130153168 + MIR3 SINE MIR 141 194 -14 255 278 19 65 chr11 20630614 20630722 -130152831 + MIR SINE MIR 19 121 -87 187 219 94 16 chr11 20631256 20631320 -130152233 - MIR SINE MIR -16 246 178 252 315 87 36 chr11 20631587 20631863 -130151690 + L2 LINE L2 2688 2977 -337 235 256 146 12 chr11 20632080 20632162 -130151391 + MIR SINE MIR 20 112 -150 216 0 0 0 chr11 20632233 20632257 -130151296 + (TG)n Simple_repeat Simple_repeat 2 25 0 1366 149 0 0 chr11 20632788 20632996 -130150557 + MER2 DNA MER2_type 2 209 -136 366 222 0 0 chr11 20633203 20633293 -130150260 + (TG)n Simple_repeat Simple_repeat 2 91 0 252 89 0 0 chr11 20633293 20633338 -130150215 + LTR66 LTR ERVL 394 438 -172 367 240 16 74 chr11 20633392 20633499 -130150054 + L2 LINE L2 3197 3298 -15 1406 199 61 0 chr11 20633499 20633776 -130149777 + AluJb SINE Alu 1 294 -18 367 240 16 74 chr11 20633776 20633789 -130149764 + L2 LINE L2 3298 3310 -3 2704 243 34 64 chr11 20634581 20634732 -130148821 - MER21B LTR ERV1 -69 794 640 321 26 0 0 chr11 20634732 20634770 -130148783 + (CA)n Simple_repeat Simple_repeat 2 39 0 192 40 0 0 chr11 20634771 20634796 -130148757 + (TC)n Simple_repeat Simple_repeat 1 25 0 2704 243 34 64 chr11 20634796 20635460 -130148093 - MER21B LTR ERV1 -222 641 1 199 323 91 0 chr11 20635522 20635621 -130147932 - MIR SINE MIR -85 123 16 305 260 271 33 chr11 20636870 20637051 -130146502 + MIR SINE MIR 20 243 -19 357 258 101 44 chr11 20637804 20637963 -130145590 + MIR SINE MIR 81 248 -14 1884 137 7 3 chr11 20638964 20639287 -130144266 - AluSx SINE Alu 0 324 1 859 154 0 0 chr11 20639488 20639624 -130143929 - FLAM_C SINE Alu -7 136 1 201 304 190 13 chr11 20639968 20640126 -130143427 + MIR SINE MIR 34 219 -43 1467 374 64 10 chr11 20640286 20640679 -130142874 - MLT2D LTR ERVL 0 414 1 633 327 44 8 chr11 20641399 20641647 -130141906 - MIR SINE MIR -1 261 5 180 242 30 76 chr11 20642095 20642161 -130141392 + L2 LINE L2 2764 2826 -488 555 261 51 97 chr11 20642676 20642748 -130140805 - MIR SINE MIR -5 257 183 1786 163 0 29 chr11 20642748 20643055 -130140498 - AluJo SINE Alu -14 298 1 2300 91 3 0 chr11 20643064 20643373 -130140180 - AluSp SINE Alu -3 310 1 555 261 51 97 chr11 20643373 20643547 -130140006 - MIR SINE MIR -87 175 13 214 342 176 28 chr11 20643577 20643940 -130139613 + L2 LINE L2 2341 2757 -557 1920 238 105 7 chr11 20643961 20644531 -130139022 - MLT1G LTR MaLR 0 590 1 406 280 28 0 chr11 20644576 20644683 -130138870 + L2 LINE L2 3178 3287 -26 548 266 121 14 chr11 20645249 20645456 -130138097 - MIR SINE MIR -14 248 20 482 336 156 43 chr11 20645518 20646057 -130137496 + L3 LINE CR1 966 1565 -12 181 204 41 20 chr11 20646263 20646312 -130137241 + MIR3 SINE MIR 107 156 -52 1977 78 3 75 chr11 20646444 20646773 -130136780 - AluSq SINE Alu 0 307 1 1925 151 0 56 chr11 20647744 20647914 -130135639 - MER44D DNA MER2_type -1882 609 431 2376 76 0 13 chr11 20647914 20648229 -130135324 + AluY SINE Alu 1 311 0 1925 151 0 56 chr11 20648229 20648415 -130135138 - MER44D DNA MER2_type -2060 431 3 1929 126 0 0 chr11 20648426 20648703 -130134850 - AluSx SINE Alu -15 297 21 1225 290 145 66 chr11 20649161 20650465 -130133088 - L2 LINE L2 -202 3070 1603 449 256 80 82 chr11 20651094 20651455 -130132098 + L2 LINE L2 2724 3079 -234 358 336 55 0 chr11 20651615 20651743 -130131810 + MIR3 SINE MIR 71 205 -3 2163 99 10 0 chr11 20652549 20652841 -130130712 - AluSx SINE Alu -17 295 1 388 316 66 15 chr11 20653585 20653721 -130129832 + L2 LINE L2 3127 3269 -3 181 323 31 0 chr11 20655059 20655124 -130128429 + MER5A DNA MER1_type 7 73 -116 1174 166 92 56 chr11 20655125 20655344 -130128209 + L1MC2 LINE L1 5996 6233 -111 1384 173 90 0 chr11 20655344 20655610 -130127943 + AluJo SINE Alu 3 292 -20 1174 166 92 56 chr11 20655610 20655727 -130127826 + L1MC2 LINE L1 6233 6344 0 201 325 12 25 chr11 20655767 20655847 -130127706 + MER5A DNA MER1_type 111 189 0 350 278 238 7 chr11 20657001 20657152 -130126401 - MER5A DNA MER1_type 0 189 4 2118 96 0 60 chr11 20658630 20658962 -130124591 - AluSq SINE Alu 0 313 2 198 0 0 0 chr11 20659489 20659511 -130124042 + (T)n Simple_repeat Simple_repeat 1 22 0 439 360 103 26 chr11 20660253 20660603 -130122950 + L2 LINE L2 2869 3245 -27 399 233 75 82 chr11 20660727 20660873 -130122680 + MIR SINE MIR 103 247 -15 206 268 61 37 chr11 20660887 20660969 -130122584 - MIR SINE MIR -171 91 8 187 283 51 94 chr11 20661240 20661378 -130122175 + MIR3 SINE MIR 15 146 -62 775 167 0 0 chr11 20661610 20661724 -130121829 + AluJb SINE Alu 183 296 -16 210 274 206 0 chr11 20661726 20661799 -130121754 - MIR SINE MIR -77 131 44 1710 164 30 7 chr11 20661808 20662107 -130121446 - AluJb SINE Alu -6 306 1 2018 96 39 0 chr11 20662943 20663224 -130120329 + AluSx SINE Alu 1 292 -20 329 375 99 0 chr11 20664000 20664152 -130119401 + MIR3 SINE MIR 21 187 -21 464 254 127 97 chr11 20664559 20664929 -130118624 + L2 LINE L2 2842 3222 -50 195 282 82 24 chr11 20664925 20665010 -130118543 - MIR SINE MIR -127 135 46 * 370 252 122 41 chr11 20666414 20666537 -130117016 - L2 LINE L2 -1 3271 3139 232 108 0 0 chr11 20666598 20666635 -130116918 - L1MB7 LINE L1 -16 6168 6132 1128 98 6 38 chr11 20666636 20666859 -130116694 - AluSg/x SINE Alu 0 312 134 345 158 0 0 chr11 20666859 20666916 -130116637 - L1MB7 LINE L1 -44 6140 6084 387 252 293 0 chr11 20669266 20669389 -130114164 + MIR3 SINE MIR 49 207 -1 214 229 43 29 chr11 20669742 20669812 -130113741 + MIR SINE MIR 22 92 -116 2160 103 3 7 chr11 20669973 20670296 -130113257 - AluSx SINE Alu 0 312 3 2000 115 0 30 chr11 20670762 20671066 -130112487 + AluSx SINE Alu 3 297 -15 265 177 65 0 chr11 20671364 20671426 -130112127 - MER113 DNA MER1_type? -1 520 455 34 24 0 0 chr11 20671437 20671478 -130112075 + AT_rich Low_complexity Low_complexity 1 41 0 356 248 29 0 chr11 20671543 20671648 -130111905 - MER113 DNA MER1_type? -413 108 1 1702 223 71 21 chr11 20673514 20673995 -130109558 + MLT1D LTR MaLR 1 505 0 700 261 60 23 chr11 20674051 20674266 -130109287 - MIR SINE MIR 0 262 40 577 224 201 0 chr11 20675134 20675308 -130108245 - MER3 DNA MER1_type 0 209 1 389 284 21 0 chr11 20675400 20675495 -130108058 + MIR SINE MIR 96 192 -70 1834 145 13 13 chr11 20675543 20675847 -130107706 - AluSx SINE Alu -8 304 1 2056 112 3 20 chr11 20677006 20677311 -130106242 - AluSx SINE Alu -8 304 5 1318 226 139 6 chr11 20677595 20677954 -130105599 - MLT1I LTR MaLR 0 409 3 306 341 133 7 chr11 20678295 20678430 -130105123 - L2 LINE L2 -19 3253 3102 2259 85 3 13 chr11 20678686 20679002 -130104551 + AluSq SINE Alu 1 313 0 234 296 37 0 chr11 20679247 20679328 -130104225 - MIR3 SINE MIR -5 203 120 495 263 125 0 chr11 20679474 20679626 -130103927 + MIR3 SINE MIR 14 184 -24 401 267 10 10 chr11 20680509 20680610 -130102943 - MIR SINE MIR -69 139 39 701 310 52 4 chr11 20681914 20682143 -130101410 - MIR SINE MIR 0 262 23 201 250 185 28 chr11 20682436 20682544 -130101009 + L2 LINE L2 3140 3264 -8 237 210 0 0 chr11 20682675 20682737 -130100816 + CT-rich Low_complexity Low_complexity 5 66 0 748 312 84 29 chr11 20682754 20683455 -130100098 + L2 LINE L2 2582 3313 0 2157 89 3 7 chr11 20683801 20684092 -130099461 - AluSq SINE Alu -23 290 1 283 247 34 34 chr11 20684188 20684277 -130099276 + MIR SINE MIR 162 250 -12 230 188 16 78 chr11 20684312 20684376 -130099177 - MIR SINE MIR -121 141 82 394 325 99 59 chr11 20685295 20685886 -130097667 + L2 LINE L2 2632 3267 -5 259 232 49 73 chr11 20685946 20686028 -130097525 + L2 LINE L2 3217 3296 -17 2055 52 0 0 chr11 20686038 20686286 -130097267 + L1PA5 LINE L1 5905 6152 -2 1519 223 21 12 chr11 20686333 20686669 -130096884 - MLT1A1 LTR MaLR 0 365 27 233 264 25 92 chr11 20686909 20687072 -130096481 - L2 LINE L2 -218 3054 2903 321 349 31 42 chr11 20687716 20687908 -130095645 - MIR SINE MIR -62 200 11 184 225 0 0 chr11 20688761 20688801 -130094752 + MIR SINE MIR 108 147 -115 388 260 40 30 chr11 20689271 20689371 -130094182 + MIR SINE MIR 2 102 -160 273 374 8 16 chr11 20689495 20689618 -130093935 + L2 LINE L2 3137 3258 -14 1937 137 17 0 chr11 20689674 20689966 -130093587 - AluSx SINE Alu -15 297 1 186 43 0 0 chr11 20689978 20690001 -130093552 + (A)n Simple_repeat Simple_repeat 1 23 0 380 271 85 45 chr11 20690065 20690242 -130093311 - MIR SINE MIR -6 256 73 359 222 131 20 chr11 20690289 20690388 -130093165 - MIR SINE MIR -30 232 123 236 171 0 0 chr11 20690390 20690425 -130093128 + Alu SINE Alu 2 36 -267 336 274 52 65 chr11 20691293 20691446 -130092107 - L1ME4a LINE L1 -27 6094 5944 843 264 77 17 chr11 20691463 20691698 -130091855 - MIR SINE MIR -10 252 4 451 316 44 18 chr11 20691719 20691944 -130091609 - L1ME4a LINE L1 -223 5898 5668 403 133 0 72 chr11 20692299 20692382 -130091171 + MADE1 DNA Mariner 4 80 0 2123 110 3 0 chr11 20692420 20692721 -130090832 + AluSx SINE Alu 1 302 -10 549 240 176 10 chr11 20692866 20693070 -130090483 + MIR SINE MIR 13 250 -12 444 258 77 32 chr11 20693090 20693245 -130090308 + MIR SINE MIR 20 181 -81 196 393 0 0 chr11 20693656 20693745 -130089808 + MIR SINE MIR 161 249 -13 280 312 70 32 chr11 20693845 20694031 -130089522 - MIR3 SINE MIR -5 203 11 1300 170 9 136 chr11 20694497 20694646 -130088907 + AluJo SINE Alu 1 87 -215 1978 137 0 0 chr11 20694646 20694945 -130088608 + AluSx SINE Alu 1 299 -13 1300 170 9 136 chr11 20694945 20695125 -130088428 + AluJo SINE Alu 87 288 -14 277 231 97 107 chr11 20695531 20695747 -130087806 + L2 LINE L2 3078 3291 -22 391 324 76 7 chr11 20695983 20696128 -130087425 + MIR SINE MIR 50 204 -58 1757 149 9 40 chr11 20696741 20697063 -130086490 + AluSx SINE Alu 1 312 0 585 271 100 78 chr11 20697254 20697715 -130085838 + L2 LINE L2 2836 3306 -7 2266 99 0 0 chr11 20698100 20698402 -130085151 + AluSx SINE Alu 2 303 -9 252 171 0 0 chr11 20698443 20698484 -130085069 + Charlie4 DNA MER1_type 9 49 -1912 253 227 0 76 chr11 20698829 20698895 -130084658 + L2 LINE L2 3253 3313 0 324 0 0 0 chr11 20701257 20701293 -130082260 + (TG)n Simple_repeat Simple_repeat 2 37 0 442 245 105 19 chr11 20701417 20701627 -130081926 - MIR SINE MIR -6 256 18 522 289 60 60 chr11 20702614 20702863 -130080690 + MIR SINE MIR 14 262 0 2311 85 0 22 chr11 20703849 20704167 -130079386 - AluY SINE Alu 0 311 1 578 280 140 10 chr11 20704311 20704504 -130079049 + MIR SINE MIR 45 262 0 282 264 23 0 chr11 20704513 20704600 -130078953 + MIR SINE MIR 174 262 0 192 204 20 41 chr11 20706284 20706333 -130077220 + MIR SINE MIR 194 241 -21 377 242 75 17 chr11 20706442 20706562 -130076991 - MER102b DNA MER1_type 0 341 215 370 335 27 27 chr11 20706723 20706908 -130076645 - MIR3 SINE MIR -4 204 20 372 261 94 29 chr11 20707113 20707251 -130076302 + L2 LINE L2 3126 3272 0 555 266 94 26 chr11 20709074 20709266 -130074287 - MLT1K LTR MaLR -57 531 327 252 0 0 0 chr11 20709293 20709321 -130074232 + (TG)n Simple_repeat Simple_repeat 1 28 0 355 177 71 71 chr11 20709347 20709460 -130074093 + MER103 DNA DNA 8 120 -46 526 330 68 34 chr11 20710620 20710856 -130072697 + MIR SINE MIR 2 245 -17 380 324 20 34 chr11 20711665 20711825 -130071728 + MIR SINE MIR 16 170 -66 2287 99 0 6 chr11 20711926 20712240 -130071313 - AluSx SINE Alu 0 312 1 571 288 148 34 chr11 20712324 20712840 -130070713 - L2 LINE L2 -230 3083 2485 271 273 26 26 chr11 20713870 20713947 -130069606 + MIR SINE MIR 65 141 -67 584 267 70 52 chr11 20714122 20714452 -130069101 + MER102b DNA MER1_type 5 340 -1 341 300 0 18 chr11 20715158 20715268 -130068285 + L1ME3 LINE L1 6030 6137 -25 492 255 30 0 chr11 20716127 20716239 -130067314 - MIR3 SINE MIR -35 173 58 186 43 0 0 chr11 20716774 20716797 -130066756 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1980 117 33 0 chr11 20716800 20717073 -130066480 - AluSx SINE Alu -30 282 1 247 257 99 10 chr11 20719009 20719110 -130064443 + L1M4 LINE L1 3743 3852 -2294 23 54 0 0 chr11 20719539 20719576 -130063977 + AT_rich Low_complexity Low_complexity 1 37 0 508 118 26 0 chr11 20720680 20720756 -130062797 - L1PA7 LINE L1 -3 6151 6074 740 125 230 3 chr11 20720856 20721016 -130062537 - Charlie3 DNA MER1_type -2443 267 25 1795 134 10 14 chr11 20721657 20721949 -130061604 + AluY SINE Alu 1 291 -20 26 0 0 0 chr11 20723457 20723483 -130060070 + AT_rich Low_complexity Low_complexity 1 26 0 530 264 57 0 chr11 20723743 20723849 -130059704 - FAM SINE Alu -68 117 6 26 0 0 0 chr11 20724299 20724325 -130059228 + AT_rich Low_complexity Low_complexity 1 26 0 747 222 156 26 chr11 20724403 20724705 -130058848 + Charlie7 DNA MER1_type 320 660 -1952 279 259 93 54 chr11 20724741 20725019 -130058534 + Charlie7 DNA MER1_type 2207 2495 -117 31 68 0 0 chr11 20727920 20727979 -130055574 + AT_rich Low_complexity Low_complexity 1 59 0 3611 165 7 8 chr11 20728207 20728801 -130054752 + L1PA15 LINE L1 5571 6163 -2 23 0 0 0 chr11 20728913 20728936 -130054617 + AT_rich Low_complexity Low_complexity 1 23 0 599 314 66 5 chr11 20729751 20730014 -130053539 + L1MC/D LINE L1 5405 5683 -651 22 35 0 0 chr11 20730700 20730729 -130052824 + AT_rich Low_complexity Low_complexity 1 29 0 298 204 0 0 chr11 20730981 20731030 -130052523 - Tigger3(Golem) DNA MER2_type -1 3028 2980 1973 150 10 0 chr11 20731684 20731978 -130051575 - AluSx SINE Alu -15 297 1 279 292 23 39 chr11 20732110 20732240 -130051313 - MIR SINE MIR -13 249 122 1449 195 40 14 chr11 20732347 20732644 -130050909 - AluSx SINE Alu -7 305 1 25 0 0 0 chr11 20732644 20732669 -130050884 + AT_rich Low_complexity Low_complexity 1 25 0 1278 234 65 15 chr11 20732710 20733112 -130050441 + L1MCc LINE L1 50 471 -5952 1892 251 82 10 chr11 20733673 20734354 -130049199 + L1M4 LINE L1 3085 3814 -2332 2195 99 0 60 chr11 20734792 20735124 -130048429 + AluSq SINE Alu 2 313 0 262 231 30 101 chr11 20736023 20736072 -130047481 - L1ME LINE L1 -241 5880 5829 2326 101 0 9 chr11 20736072 20736388 -130047165 - AluSq SINE Alu 0 313 1 262 231 30 101 chr11 20736388 20736507 -130047046 - L1ME LINE L1 -292 5829 5724 2476 60 0 29 chr11 20736508 20736822 -130046731 - AluY SINE Alu 0 311 7 381 254 151 8 chr11 20737379 20737505 -130046048 + MIR SINE MIR 47 190 -72 349 299 39 16 chr11 20737647 20737774 -130045779 - MIR SINE MIR -117 145 16 22 35 0 0 chr11 20738037 20738066 -130045487 + AT_rich Low_complexity Low_complexity 1 29 0 4318 164 29 10 chr11 20739047 20739840 -130043713 - L1PA16 LINE L1 -2 6164 5357 454 313 70 51 chr11 20740764 20741020 -130042533 - L3 LINE CR1 -115 1462 1202 252 0 0 0 chr11 20741754 20741782 -130041771 + (TG)n Simple_repeat Simple_repeat 1 28 0 1647 161 20 43 chr11 20746408 20746712 -130036841 + AluJo SINE Alu 1 297 -15 470 290 108 34 chr11 20746802 20747071 -130036482 - L2 LINE L2 -44 3269 2981 714 253 111 18 chr11 20747081 20747457 -130036096 - MLT1J2 LTR MaLR -11 439 2 633 270 74 74 chr11 20747775 20748138 -130035415 + L2 LINE L2 2871 3233 -80 812 254 208 28 chr11 20748182 20748717 -130034836 - L2 LINE L2 -751 2563 1933 449 291 64 49 chr11 20749221 20749424 -130034129 + MIR SINE MIR 9 214 -48 1886 112 40 30 chr11 20749680 20749976 -130033577 - AluSq SINE Alu -14 299 1 1645 82 0 10 chr11 20751387 20751593 -130031960 - AluSg SINE Alu -105 205 2 417 256 196 30 chr11 20751593 20751792 -130031761 - MIR SINE MIR -3 259 28 21 71 0 0 chr11 20753832 20753874 -130029679 + AT_rich Low_complexity Low_complexity 1 42 0 1866 171 20 0 chr11 20753906 20754211 -130029342 + AluJb SINE Alu 1 311 -1 214 295 50 72 chr11 20755099 20755238 -130028315 - L2 LINE L2 0 3272 3137 442 309 48 106 chr11 20755520 20755918 -130027635 - L2 LINE L2 -3 3269 2895 * 477 198 69 26 chr11 20755916 20756032 -130027521 - L2 LINE L2 -3 3310 3190 848 229 55 28 chr11 20756176 20756429 -130027124 - MIR SINE MIR -1 261 2 351 290 37 43 chr11 20757085 20757247 -130026306 + MIR SINE MIR 20 180 -82 308 228 182 27 chr11 20757551 20757712 -130025841 - MIR SINE MIR -34 228 31 232 194 0 28 chr11 20758182 20758254 -130025299 + GA-rich Low_complexity Low_complexity 1 70 0 203 317 65 27 chr11 20758334 20758486 -130025067 - MIR SINE MIR -37 171 18 2186 136 0 3 chr11 20759420 20759729 -130023824 + AluSx SINE Alu 1 308 -4 303 319 262 0 chr11 20759757 20759948 -130023605 + MIR SINE MIR 9 249 -13 745 51 20 0 chr11 20760798 20760896 -130022657 - L1PB2 LINE L1 -2 6149 6050 217 150 0 25 chr11 20762436 20762476 -130021077 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 789 260 18 0 chr11 20763217 20763386 -130020167 + MIR SINE MIR 35 206 -56 509 280 37 47 chr11 20765169 20765383 -130018170 + MIR SINE MIR 51 262 0 238 275 29 0 chr11 20765739 20765808 -130017745 + MIR SINE MIR 45 115 -147 480 266 57 38 chr11 20766101 20766265 -130017288 + MIR3 SINE MIR 2 183 -25 244 313 92 95 chr11 20767093 20767397 -130016156 - L2 LINE L2 -158 3114 2812 2157 104 7 0 chr11 20767773 20768071 -130015482 + AluSp SINE Alu 1 300 -13 359 330 127 50 chr11 20768342 20768563 -130014990 + L1ME4a LINE L1 5884 6121 0 461 164 17 121 chr11 20769134 20769171 -130014382 + MIR SINE MIR 87 126 -136 2202 109 0 0 chr11 20769171 20769475 -130014078 - AluSg SINE Alu -3 307 4 461 164 17 121 chr11 20769475 20769553 -130014000 + MIR SINE MIR 126 190 -72 359 275 119 0 chr11 20769568 20769677 -130013876 + L2 LINE L2 3187 3308 -5 2114 106 0 7 chr11 20769859 20770160 -130013393 - AluSx SINE Alu -13 299 1 195 268 56 14 chr11 20770729 20770800 -130012753 - L2 LINE L2 0 3272 3199 342 361 48 36 chr11 20771282 20771448 -130012105 + MIR3 SINE MIR 33 200 -8 1214 213 17 17 chr11 20772422 20772661 -130010892 + MIR SINE MIR 24 262 0 418 262 37 9 chr11 20772661 20772768 -130010785 + L2 LINE L2 3190 3299 -14 296 245 191 0 chr11 20772897 20772991 -130010562 + MIR SINE MIR 83 194 -68 1713 126 4 47 chr11 20773798 20774076 -130009477 - AluSx SINE Alu -46 266 1 297 125 0 62 chr11 20774086 20774150 -130009403 - MER53 DNA DNA -124 65 6 412 293 107 0 chr11 20774797 20774937 -130008616 + MIR SINE MIR 20 174 -88 207 211 0 0 chr11 20775027 20775065 -130008488 + A-rich Low_complexity Low_complexity 2 39 0 207 302 124 70 chr11 20775146 20775388 -130008165 - L2 LINE L2 -3 3269 3015 276 313 159 29 chr11 20775424 20775632 -130007921 - L2 LINE L2 -220 3052 2818 221 266 52 117 chr11 20776481 20776635 -130006918 + MER5A DNA MER1_type 44 187 -2 23412 76 13 11 chr11 20777245 20781227 -130002326 - L1PA7 LINE L1 -3 6151 2151 2258 69 0 69 chr11 20781493 20781827 -130001726 - AluY SINE Alu 0 311 1 233 299 138 46 chr11 20782382 20782556 -130000997 - MIR SINE MIR -71 191 2 280 311 132 9 chr11 20782598 20782704 -130000849 - L2 LINE L2 -6 3266 3148 245 335 0 27 chr11 20786463 20786579 -129996974 + MIR SINE MIR 42 150 -93 238 333 32 11 chr11 20786860 20786953 -129996600 + MIR SINE MIR 118 212 -50 2028 141 0 6 chr11 20787195 20787508 -129996045 - AluSx SINE Alu -1 311 1 388 171 81 81 chr11 20788386 20788497 -129995056 + L1MCa LINE L1 2242 2352 -4074 657 122 50 0 chr11 20788498 20788637 -129994916 + L1MCa LINE L1 2322 2467 -3959 250 214 0 18 chr11 20789586 20789642 -129993911 + L2 LINE L2 3257 3311 -2 427 269 87 0 chr11 20789740 20789889 -129993664 - MER103 DNA DNA -4 162 1 2262 110 0 0 chr11 20792112 20792422 -129991131 - AluSg SINE Alu 0 310 1 217 243 0 81 chr11 20792555 20792629 -129990924 - MIR SINE MIR -78 184 117 260 305 114 15 chr11 20794401 20794532 -129989021 - MIR SINE MIR -111 151 8 781 296 113 10 chr11 20796632 20797021 -129986532 - MLT1K LTR MaLR -16 572 144 22 0 0 0 chr11 20797732 20797754 -129985799 + AT_rich Low_complexity Low_complexity 1 22 0 414 0 0 0 chr11 20798441 20798487 -129985066 + (TG)n Simple_repeat Simple_repeat 2 47 0 195 167 0 0 chr11 20799451 20799493 -129984060 + (TAA)n Simple_repeat Simple_repeat 3 44 0 390 289 38 57 chr11 20799538 20799697 -129983856 - MIR SINE MIR -79 183 28 308 302 56 20 chr11 20799911 20800057 -129983496 - MER5A DNA MER1_type -28 161 3 605 312 44 0 chr11 20800335 20800540 -129983013 + MIR SINE MIR 14 227 -35 620 286 61 9 chr11 20801765 20801978 -129981575 - MIR SINE MIR -16 246 23 451 281 128 71 chr11 20802579 20803133 -129980420 + L2 LINE L2 2593 3239 -33 805 282 18 14 chr11 20803151 20803371 -129980182 + MIR SINE MIR 13 233 -29 600 111 0 0 chr11 20804101 20804191 -129979362 + (TA)n Simple_repeat Simple_repeat 2 91 0 306 103 0 0 chr11 20804237 20804276 -129979277 + Alu SINE Alu 1 39 -262 327 248 233 0 chr11 20805265 20805394 -129978159 - MIR SINE MIR -11 251 93 23 0 0 0 chr11 20805596 20805619 -129977934 + AT_rich Low_complexity Low_complexity 1 23 0 289 302 35 0 chr11 20806591 20806677 -129976876 + MIR3 SINE MIR 74 162 -46 209 302 126 38 chr11 20807555 20807714 -129975839 + MIR3 SINE MIR 7 179 -29 370 264 83 0 chr11 20808046 20808167 -129975386 + MIR SINE MIR 108 238 -24 1495 181 10 17 chr11 20808594 20808887 -129974666 + AluJo SINE Alu 1 291 -21 694 226 125 0 chr11 20808987 20809155 -129974398 - MER63A DNA MER1_type -1 209 21 406 302 0 10 chr11 20809176 20809272 -129974281 - MIR SINE MIR -166 96 2 195 368 0 15 chr11 20809690 20809758 -129973795 - L2 LINE L2 -16 3256 3190 2392 51 7 0 chr11 20810230 20810523 -129973030 + AluY SINE Alu 11 305 -6 1259 188 113 4 chr11 20810530 20810796 -129972757 + AluSc SINE Alu 1 295 -14 27 0 0 0 chr11 20811127 20811154 -129972399 + AT_rich Low_complexity Low_complexity 1 27 0 210 240 0 20 chr11 20815218 20815268 -129968285 + CT-rich Low_complexity Low_complexity 4 52 0 353 289 104 22 chr11 20815596 20815731 -129967822 - MER5A DNA MER1_type -35 154 9 216 328 172 23 chr11 20815800 20815974 -129967579 - MIR SINE MIR -13 249 50 1846 141 3 13 chr11 20816457 20816761 -129966792 + AluSx SINE Alu 1 301 -11 654 221 45 19 chr11 20816960 20817114 -129966439 - MLT1E LTR MaLR 0 593 436 1372 265 98 37 chr11 20817164 20817486 -129966067 + L1ME3A LINE L1 4030 4331 -1815 2288 69 3 3 chr11 20817486 20817789 -129965764 + AluY SINE Alu 1 303 -8 1372 265 98 37 chr11 20817789 20818232 -129965321 + L1ME3A LINE L1 4331 4842 -1304 1575 164 3 44 chr11 20818450 20818625 -129964928 - AluJo SINE Alu -4 308 150 2044 119 3 3 chr11 20818625 20818928 -129964625 - AluSx SINE Alu -9 303 1 1575 164 3 44 chr11 20818928 20819070 -129964483 - AluJo SINE Alu -162 150 4 2134 109 0 0 chr11 20819163 20819456 -129964097 + AluSg SINE Alu 1 293 -17 395 287 155 64 chr11 20819530 20819826 -129963727 + LTR16C LTR ERVL 75 397 -94 249 133 107 93 chr11 20819864 20819939 -129963614 + MER96 DNA MER1_type? 98 173 -2 303 226 145 54 chr11 20820015 20820034 -129963519 + L1ME3A LINE L1 5621 5637 -533 971 260 48 54 chr11 20820034 20820426 -129963127 + MLT1B LTR MaLR 1 390 0 303 226 145 54 chr11 20820426 20820812 -129962741 + L1ME3A LINE L1 5637 6071 -99 1774 202 22 14 chr11 20820812 20821174 -129962379 + MLT1A1 LTR MaLR 1 365 0 303 226 145 54 chr11 20821174 20821240 -129962313 + L1ME3A LINE L1 6071 6130 -40 201 204 37 19 chr11 20821422 20821476 -129962077 + MIR SINE MIR 62 116 -92 398 330 94 17 chr11 20821612 20821843 -129961710 + L3 LINE CR1 1306 1554 -23 242 236 139 67 chr11 20821843 20822008 -129961545 + MIR3 SINE MIR 1 177 -31 1986 132 0 0 chr11 20822282 20822571 -129960982 + AluSx SINE Alu 3 291 -21 241 246 49 0 chr11 20822774 20822835 -129960718 - MIR SINE MIR -153 109 46 380 268 25 108 chr11 20823073 20823230 -129960323 + MIR SINE MIR 38 181 -27 3671 136 101 18 chr11 20823230 20823883 -129959670 - MER39 LTR ERV1 0 707 1 1889 175 49 31 chr11 20823951 20824340 -129959213 - MSTD LTR MaLR 0 396 1 219 309 41 10 chr11 20824417 20824514 -129959039 + MIR SINE MIR 30 129 -79 741 181 0 45 chr11 20824777 20824808 -129958745 - AluJo/FRAM SINE Alu -9 303 272 1958 136 0 41 chr11 20824808 20825125 -129958428 + AluSx SINE Alu 1 304 -8 741 181 0 45 chr11 20825125 20825248 -129958305 - AluJo/FRAM SINE Alu -40 272 156 427 152 13 38 chr11 20825273 20825352 -129958201 + MER45A DNA AcHobo 102 178 0 353 277 40 40 chr11 20825366 20825514 -129958039 - MLT1K LTR MaLR -424 164 17 5522 191 51 31 chr11 20825671 20826970 -129956583 + L1M3f LINE L1 1 1289 -4137 1909 142 3 10 chr11 20826970 20827279 -129956274 + AluJb SINE Alu 1 307 -5 5522 191 51 31 chr11 20827279 20827354 -129956199 + L1M3f LINE L1 1289 1361 -4065 423 210 0 0 chr11 20827374 20827455 -129956098 - MIR SINE MIR -32 230 150 940 281 59 32 chr11 20828020 20828615 -129954938 + L1MC4 LINE L1 6362 7058 -835 497 291 67 27 chr11 20828907 20829130 -129954423 + MER102a DNA MER1_type 98 329 -1 407 19 19 0 chr11 20829231 20829283 -129954270 + (TG)n Simple_repeat Simple_repeat 1 53 0 2024 135 0 0 chr11 20829409 20829705 -129953848 + AluSx SINE Alu 1 296 -16 705 283 187 39 chr11 20830025 20830410 -129953143 + MLT1L LTR MaLR 12 453 -162 2275 106 0 0 chr11 20830883 20831195 -129952358 + AluSx SINE Alu 1 312 0 379 290 16 32 chr11 20831295 20831419 -129952134 - MIR SINE MIR -106 156 35 829 263 12 40 chr11 20831798 20832045 -129951508 + MIR SINE MIR 20 259 -3 349 310 10 0 chr11 20832723 20832823 -129950730 + L2 LINE L2 1700 1800 -1514 400 203 0 14 chr11 20832824 20832898 -129950655 + MER112 DNA MER1_type 6 78 -182 307 198 104 38 chr11 20832940 20833046 -129950507 + MER112 DNA MER1_type 60 172 -88 22 0 0 0 chr11 20833049 20833071 -129950482 + AT_rich Low_complexity Low_complexity 1 22 0 365 300 82 21 chr11 20833360 20833593 -129949960 - L1M4 LINE L1 -1095 5051 4805 327 328 76 25 chr11 20833599 20833913 -129949640 + L2 LINE L2 1840 2169 -1145 643 286 86 9 chr11 20834120 20834340 -129949213 + MLT1J LTR MaLR 92 328 -183 603 302 88 73 chr11 20834567 20834951 -129948602 + L2 LINE L2 2467 2856 -458 2356 123 40 0 chr11 20835038 20835387 -129948166 + THE1B LTR MaLR 2 364 0 494 286 208 31 chr11 20835387 20835681 -129947872 + L2 LINE L2 2963 3308 -5 2070 123 3 7 chr11 20835731 20836039 -129947514 + AluSx SINE Alu 2 308 -4 1109 182 19 37 chr11 20836996 20837265 -129946288 - L1MC3 LINE L1 0 7785 7522 264 294 176 20 chr11 20837588 20837741 -129945812 + MIR SINE MIR 54 230 -32 3842 117 8 0 chr11 20837860 20838382 -129945171 - MER1A DNA MER1_type 0 527 2 226 281 129 29 chr11 20838607 20838746 -129944807 + MIR SINE MIR 110 262 0 2882 133 20 7 chr11 20839164 20839621 -129943932 - MER50 LTR ERV1 -271 463 1 301 304 14 34 chr11 20839646 20839794 -129943759 - L2 LINE L2 -1077 2237 2093 9369 201 59 49 chr11 20840061 20840561 -129942992 + Charlie1 DNA MER1_type 2 495 -2266 1864 141 28 75 chr11 20840561 20840716 -129942837 - MER2 DNA MER2_type 0 344 183 1975 119 7 13 chr11 20840716 20841018 -129942535 + AluJb SINE Alu 9 308 -4 1864 141 28 75 chr11 20841018 20841223 -129942330 - MER2 DNA MER2_type -161 183 1 9369 201 59 49 chr11 20841223 20841276 -129942277 + Charlie1 DNA MER1_type 495 546 -2215 2142 115 0 0 chr11 20841276 20841581 -129941972 + AluSc SINE Alu 1 305 -4 9369 201 59 49 chr11 20841581 20841962 -129941591 + Charlie1 DNA MER1_type 546 922 -1839 1904 126 14 3 chr11 20841962 20842255 -129941298 + AluSx SINE Alu 3 298 -14 243 0 0 0 chr11 20842258 20842285 -129941268 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 9369 201 59 49 chr11 20842285 20842998 -129940555 + Charlie1 DNA MER1_type 923 1627 -1134 2022 102 0 3 chr11 20842998 20843329 -129940224 + AluSx SINE Alu 1 330 0 9369 201 59 49 chr11 20843329 20844068 -129939485 + Charlie1 DNA MER1_type 1627 2357 -404 1592 187 10 3 chr11 20844068 20844362 -129939191 + AluJb SINE Alu 1 296 -16 9369 201 59 49 chr11 20844362 20844392 -129939161 + Charlie1 DNA MER1_type 2357 2385 -376 1523 103 3 141 chr11 20844392 20844732 -129938821 - AluSx SINE Alu -19 293 1 9369 201 59 49 chr11 20844732 20844960 -129938593 + Charlie1 DNA MER1_type 2385 2759 -2 268 250 213 9 chr11 20845181 20845289 -129938264 + MIR SINE MIR 77 206 -56 226 182 0 73 chr11 20845409 20845464 -129938089 + MIR SINE MIR 201 251 -11 * 243 88 0 0 chr11 20845432 20845466 -129938087 + L2 LINE L2 3265 3298 -15 201 130 0 43 chr11 20845693 20845711 -129937842 + (A)n Simple_repeat Simple_repeat 1 18 -26 2311 80 0 10 chr11 20845711 20846025 -129937528 + AluY SINE Alu 1 311 0 201 130 0 43 chr11 20846025 20846052 -129937501 + (A)n Simple_repeat Simple_repeat 18 44 0 209 408 48 0 chr11 20846149 20846252 -129937301 - L2 LINE L2 0 3272 3165 2006 121 10 0 chr11 20846360 20846658 -129936895 + AluSx SINE Alu 1 301 -11 194 81 27 0 chr11 20846668 20846705 -129936848 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 2694 146 28 19 chr11 20846900 20847373 -129936180 - L1MB2 LINE L1 -8 6163 5687 603 282 55 6 chr11 20848351 20848532 -129935021 + MIR3 SINE MIR 16 205 -3 204 186 47 0 chr11 20850425 20850468 -129933085 + MIR SINE MIR 101 145 -63 26 30 0 0 chr11 20851085 20851118 -129932435 + AT_rich Low_complexity Low_complexity 1 33 0 345 24 0 0 chr11 20851730 20851772 -129931781 + (TGG)n Simple_repeat Simple_repeat 1 42 0 191 236 69 56 chr11 20855758 20855830 -129927723 + L3 LINE CR1 1370 1442 -135 310 269 0 21 chr11 20855973 20856066 -129927487 + CT-rich Low_complexity Low_complexity 1 91 0 214 182 0 0 chr11 20858126 20858170 -129925383 + T-rich Low_complexity Low_complexity 1 44 0 25 51 0 0 chr11 20858501 20858540 -129925013 + AT_rich Low_complexity Low_complexity 1 39 0 413 200 0 0 chr11 20858540 20858610 -129924943 - FLAM SINE Alu -15 118 49 356 247 41 23 chr11 20858631 20858763 -129924790 + MIR3 SINE MIR 53 193 -15 1552 169 81 112 chr11 20859394 20859466 -129924087 - LTR48 LTR ERV1 -344 443 370 824 134 16 0 chr11 20859466 20859593 -129923960 + FLAM_C SINE Alu 1 129 -4 1552 169 81 112 chr11 20859593 20859753 -129923800 - LTR48 LTR ERV1 -417 370 207 2128 73 50 20 chr11 20859753 20860055 -129923498 - AluY SINE Alu 0 311 1 1552 169 81 112 chr11 20860055 20860278 -129923275 - LTR48 LTR ERV1 -580 207 1 578 263 46 69 chr11 20861040 20861453 -129922100 + LTR33 LTR ERVL 1 452 -69 926 344 90 19 chr11 20861711 20862089 -129921464 - MER115 DNA AcHobo -287 406 2 4196 135 26 3 chr11 20862122 20863316 -129920237 - L1MA6 LINE L1 -408 5892 4676 278 301 21 0 chr11 20863344 20863437 -129920116 + L3 LINE CR1 1191 1285 -292 214 191 64 0 chr11 20863487 20863534 -129920019 + L2 LINE L2 2679 2728 -586 444 237 52 30 chr11 20863539 20863674 -129919879 - L2 LINE L2 -1 3312 3175 200 329 146 18 chr11 20863702 20863866 -129919687 + L2 LINE L2 2852 3036 -236 511 171 26 68 chr11 20863920 20864037 -129919516 + MIR SINE MIR 64 175 -87 1737 155 10 13 chr11 20864173 20864477 -129919076 - AluSx SINE Alu -9 303 1 559 262 0 27 chr11 20864542 20864691 -129918862 - MIR SINE MIR -14 248 104 1652 216 43 26 chr11 20864701 20865237 -129918316 + MLT2F LTR ERVL 1 620 -43 263 26 51 0 chr11 20866293 20866332 -129917221 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 1549 90 36 5 chr11 20866749 20866972 -129916581 - MER30 DNA MER1_type 0 230 1 2253 114 3 3 chr11 20867167 20867473 -129916080 + AluSx SINE Alu 1 306 -6 21 36 0 0 chr11 20867819 20867847 -129915706 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 20867885 20867906 -129915647 + AT_rich Low_complexity Low_complexity 1 21 0 267 315 66 45 chr11 20868402 20868683 -129914870 + L2 LINE L2 2765 3071 -201 201 333 30 0 chr11 20868779 20868845 -129914708 + L2 LINE L2 3205 3272 0 * 610 252 69 41 chr11 20868813 20869031 -129914522 - MIR SINE MIR -38 224 1 270 245 146 11 chr11 20869234 20869459 -129914094 + L1ME4a LINE L1 5518 5786 -335 279 236 147 54 chr11 20869467 20869726 -129913827 + L1ME4a LINE L1 5811 6093 -28 1254 151 5 24 chr11 20869951 20870156 -129913397 - AluJo SINE Alu -16 296 96 2446 95 0 0 chr11 20871846 20872151 -129911402 + AluSx SINE Alu 1 305 -7 1972 162 86 0 chr11 20872262 20872633 -129910920 - MER57A LTR ERV1 0 403 1 201 255 21 0 chr11 20872976 20873023 -129910530 - MIR3 SINE MIR -11 197 150 340 47 0 0 chr11 20873215 20873258 -129910295 - tRNA-Cys-TGC tRNA tRNA -32 43 1 4254 74 2 0 chr11 20873451 20874004 -129909549 + MER41A LTR ERV1 1 554 0 281 130 325 0 chr11 20874088 20874165 -129909388 + MER41A-int LTR ERV1 1 102 -5844 5106 203 102 15 chr11 20874174 20875726 -129907827 + MER41A-int LTR ERV1 1 1775 -4171 1593 62 0 0 chr11 20875712 20875921 -129907632 + MER41A-int LTR ERV1 1952 2160 -4103 * 8619 130 50 26 chr11 20875917 20877926 -129905627 + MER41A-int LTR ERV1 2629 3726 -1289 299 186 0 0 chr11 20878027 20878086 -129905467 + Charlie1 DNA MER1_type 2689 2747 -14 246 297 0 0 chr11 20878456 20878520 -129905033 - MIR SINE MIR -79 129 66 309 109 0 0 chr11 20878633 20878679 -129904874 + (CA)n Simple_repeat Simple_repeat 1 46 0 923 43 0 0 chr11 20878688 20878804 -129904749 - L1PA5 LINE L1 -20 6134 6019 220 358 95 16 chr11 20879886 20880076 -129903477 + L2 LINE L2 2289 2493 -821 465 252 24 0 chr11 20880080 20880203 -129903350 + MER94 DNA DNA 3 128 -6 412 338 127 14 chr11 20880289 20880688 -129902865 + L2 LINE L2 2600 3047 -225 242 281 122 12 chr11 20881033 20881115 -129902438 - MER91A DNA MER1_type -86 110 20 210 300 17 0 chr11 20881129 20881189 -129902364 + L2 LINE L2 3209 3269 -3 626 311 172 37 chr11 20882025 20882522 -129901031 - L2 LINE L2 0 3313 2724 352 225 25 108 chr11 20882672 20882792 -129900761 - MER97b DNA MER1_type? -612 441 332 415 204 21 11 chr11 20882916 20883009 -129900544 - MIR SINE MIR -165 97 4 261 98 0 0 chr11 20883217 20883258 -129900295 + (CTA)n Simple_repeat Simple_repeat 3 43 0 348 203 40 0 chr11 20883274 20883348 -129900205 - MIR SINE MIR -16 246 170 1140 250 97 78 chr11 20883556 20884157 -129899396 - MLT1L LTR MaLR -2 613 2 938 254 184 12 chr11 20884284 20884611 -129898942 + MLT1J2 LTR MaLR 6 388 -62 282 294 78 20 chr11 20884745 20884847 -129898706 - L3 LINE CR1 -50 1527 1420 306 283 5 109 chr11 20884880 20885064 -129898489 + MER117 DNA MER1_type 2 166 -31 443 298 30 23 chr11 20885269 20885400 -129898153 - MIR3 SINE MIR -65 143 12 532 206 7 75 chr11 20885461 20885576 -129897977 - MER20 DNA MER1_type -55 164 59 2582 93 13 21 chr11 20885576 20885954 -129897599 + THE1C LTR MaLR 1 375 0 532 206 7 75 chr11 20885954 20885984 -129897569 - MER20 DNA MER1_type -160 59 29 1851 157 10 10 chr11 20886487 20886780 -129896773 - AluJb SINE Alu -19 293 1 7734 103 46 17 chr11 20889682 20890736 -129892817 + MER41A-int LTR ERV1 4682 5777 -169 2352 109 0 3 chr11 20890736 20891049 -129892504 - AluSx SINE Alu 0 312 1 7734 103 46 17 chr11 20891049 20891222 -129892331 + MER41A-int LTR ERV1 5777 5944 -2 3880 104 4 7 chr11 20891222 20891778 -129891775 + MER41A LTR ERV1 1 554 0 2022 120 7 0 chr11 20891933 20892232 -129891321 - AluSx SINE Alu -11 301 1 695 226 87 84 chr11 20894768 20894834 -129888719 + L2 LINE L2 2040 2104 -1210 451 178 30 0 chr11 20894834 20894935 -129888618 - L1MA7 LINE L1 -1 6290 6187 695 226 87 84 chr11 20894935 20895143 -129888410 + L2 LINE L2 2104 2315 -999 992 287 128 24 chr11 20895181 20895641 -129887912 - L2 LINE L2 -416 2898 2391 309 146 36 0 chr11 20896204 20896259 -129887294 - L2 LINE L2 -5 3308 3252 1979 155 39 29 chr11 20896707 20897093 -129886460 + MLT1B LTR MaLR 1 390 0 764 215 41 6 chr11 20897109 20897281 -129886272 - MER5B DNA MER1_type 0 178 1 2362 103 0 0 chr11 20897700 20898001 -129885552 + AluSx SINE Alu 3 303 -9 182 212 293 30 chr11 20898003 20898102 -129885451 + L3 LINE CR1 1431 1555 -22 270 337 11 0 chr11 20898248 20898340 -129885213 + MIR3 SINE MIR 110 202 -6 232 192 19 0 chr11 20899201 20899253 -129884300 - MLT2C1 LTR ERVL -3 551 499 282 206 0 0 chr11 20899263 20899336 -129884217 + (TA)n Simple_repeat Simple_repeat 1 73 0 1717 153 27 67 chr11 20899336 20899708 -129883845 - MLT2C1 LTR ERVL -40 357 1 299 340 10 0 chr11 20899886 20899986 -129883567 - MIR3 SINE MIR -10 198 98 615 276 75 152 chr11 20900638 20902110 -129881443 + L2 LINE L2 1349 2707 -607 624 219 56 22 chr11 20902118 20902296 -129881257 - L1ME3A LINE L1 -11 6159 5976 456 285 53 93 chr11 20902343 20902696 -129880857 + L2 LINE L2 2686 3022 -250 606 134 67 0 chr11 20904046 20904180 -129879373 + (CATAC)n Simple_repeat Simple_repeat 1 143 0 493 234 97 97 chr11 20904290 20904329 -129879224 - MER97c DNA MER1_type? -853 237 199 2159 122 3 0 chr11 20904329 20904624 -129878929 - AluSg SINE Alu -14 296 1 493 234 97 97 chr11 20904624 20904811 -129878742 - MER97c DNA MER1_type? -890 200 11 232 279 41 57 chr11 20904841 20904963 -129878590 - L2 LINE L2 -1103 2211 2092 742 205 195 17 chr11 20905762 20906148 -129877405 + MLT1H LTR MaLR 57 549 0 572 260 64 59 chr11 20907328 20907547 -129876006 + MIR SINE MIR 43 262 0 40 0 0 0 chr11 20907557 20907597 -129875956 + AT_rich Low_complexity Low_complexity 1 40 0 365 245 99 7 chr11 20907717 20907846 -129875707 - MIR SINE MIR -66 142 19 1930 51 0 0 chr11 20907857 20908093 -129875460 - L1PA7 LINE L1 -6 6148 5913 338 370 54 27 chr11 20908201 20908385 -129875168 - MER5A DNA MER1_type 0 189 1 571 273 5 72 chr11 20908546 20908740 -129874813 - L2 LINE L2 -1 3312 3132 4505 194 30 16 chr11 20908752 20910690 -129872863 + L1MB4 LINE L1 4212 6178 -2 26 30 0 0 chr11 20910849 20910882 -129872671 + AT_rich Low_complexity Low_complexity 1 33 0 330 67 0 0 chr11 20911021 20911066 -129872487 + (CA)n Simple_repeat Simple_repeat 1 45 0 225 0 0 0 chr11 20911065 20911090 -129872463 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 253 137 0 0 chr11 20911118 20911169 -129872384 - L1MA3 LINE L1 0 6305 6255 1990 100 40 31 chr11 20911170 20911521 -129872032 + L1MA2 LINE L1 5896 6249 -55 7132 242 17 43 chr11 20911538 20912189 -129871364 - L1 LINE L1 -1809 5756 5089 1878 126 54 0 chr11 20912189 20912466 -129871087 - AluSx SINE Alu -20 292 1 7132 242 17 43 chr11 20912466 20912623 -129870930 - L1 LINE L1 -2476 5089 4929 1902 174 0 0 chr11 20912623 20912927 -129870626 - AluJb SINE Alu -8 304 1 7132 242 17 43 chr11 20912927 20914253 -129869300 - L1 LINE L1 -2636 4929 3677 6680 117 42 2 chr11 20914277 20915384 -129868169 + L1PBa LINE L1 1058 2208 -4655 4201 32 0 0 chr11 20915384 20915878 -129867675 + L1PA5 LINE L1 5653 6146 -8 32 26 0 0 chr11 20915878 20915917 -129867636 + AT_rich Low_complexity Low_complexity 1 39 0 11181 163 58 7 chr11 20915934 20917069 -129866484 - L1 LINE L1 -5233 2332 1256 1942 153 18 24 chr11 20917069 20917408 -129866145 - MER1B DNA MER1_type 0 337 1 11181 163 58 7 chr11 20917408 20918495 -129865058 - L1 LINE L1 -6309 1256 19 2218 188 153 63 chr11 20918688 20919455 -129864098 - L1ME2 LINE L1 -9 6224 5389 2108 219 78 40 chr11 20919461 20920290 -129863263 - L1ME2 LINE L1 -874 5341 4481 1543 252 56 90 chr11 20920407 20921622 -129861931 - L1ME2 LINE L1 -4598 1798 625 1238 174 97 0 chr11 20921668 20921926 -129861627 + MER7A DNA MER2_type 66 346 0 304 363 17 20 chr11 20922011 20922306 -129861247 - L1ME2 LINE L1 -5867 529 236 579 274 25 6 chr11 20922749 20922906 -129860647 - MIR SINE MIR 0 262 103 345 310 0 0 chr11 20922998 20923085 -129860468 + MIR3 SINE MIR 81 167 -41 195 292 136 7 chr11 20923319 20923429 -129860124 + MIR SINE MIR 36 150 -65 1818 125 104 0 chr11 20923980 20924259 -129859294 + AluSg SINE Alu 1 308 -2 2208 104 14 0 chr11 20924481 20924769 -129858784 + AluSx SINE Alu 1 292 -20 25 0 0 0 chr11 20924769 20924794 -129858759 + AT_rich Low_complexity Low_complexity 1 25 0 313 273 69 24 chr11 20929071 20929194 -129854359 + MIR SINE MIR 19 145 -71 231 284 18 0 chr11 20929403 20929512 -129854041 + L1ME4a LINE L1 5995 6105 -16 605 218 13 26 chr11 20930668 20930824 -129852729 - MER103 DNA DNA -12 154 1 358 291 11 78 chr11 20930960 20931065 -129852488 + L3 LINE CR1 672 762 -815 1618 221 70 27 chr11 20931065 20931549 -129852004 - MLT1D LTR MaLR 0 505 1 358 291 11 78 chr11 20931549 20931622 -129851931 + L3 LINE CR1 762 838 -739 189 244 116 23 chr11 20931674 20931760 -129851793 - L2 LINE L2 0 3313 3220 904 220 4 70 chr11 20931906 20932078 -129851475 + MIR SINE MIR 50 205 -57 1700 126 112 4 chr11 20932078 20932347 -129851206 + AluSx SINE Alu 5 302 -10 904 220 4 70 chr11 20932347 20932401 -129851152 + MIR SINE MIR 205 261 -1 457 351 157 19 chr11 20932432 20932757 -129850796 + L3 LINE CR1 1119 1488 -89 195 42 0 0 chr11 20932881 20932905 -129850648 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 209 347 71 25 chr11 20933237 20933476 -129850077 - L2 LINE L2 -339 2975 2726 982 163 98 20 chr11 20933703 20933906 -129849647 - MER20 DNA MER1_type 0 219 1 248 322 112 54 chr11 20934986 20935228 -129848325 + L2 LINE L2 3017 3272 0 293 288 131 42 chr11 20935274 20935460 -129848093 - L1ME4a LINE L1 -22 6099 5931 2144 125 0 0 chr11 20935460 20935755 -129847798 + AluSx SINE Alu 1 295 -17 293 288 131 42 chr11 20935755 20936043 -129847510 - L1ME4a LINE L1 -190 5931 5583 332 241 0 58 chr11 20936263 20936350 -129847203 - MIR SINE MIR -111 151 70 456 225 147 31 chr11 20936706 20936835 -129846718 - MIR3 SINE MIR -12 196 53 362 187 31 31 chr11 20937152 20937251 -129846302 - MER5A DNA MER1_type 0 178 80 34 24 0 0 chr11 20938171 20938212 -129845341 + AT_rich Low_complexity Low_complexity 1 41 0 307 339 33 25 chr11 20939459 20939580 -129843973 - L2 LINE L2 0 3272 3151 1537 242 75 71 chr11 20939938 20940501 -129843052 - MLT1G1 LTR MaLR -30 565 1 204 302 23 12 chr11 20941089 20941175 -129842378 + MIR SINE MIR 176 262 0 1926 146 10 0 chr11 20942016 20942317 -129841236 + AluJb SINE Alu 1 304 -8 612 147 39 32 chr11 20942319 20942475 -129841078 + L1M4 LINE L1 5642 5798 -386 2242 160 28 7 chr11 20942576 20943013 -129840540 + L1MB7 LINE L1 5728 6173 -11 722 180 193 12 chr11 20943069 20943313 -129840240 + LTR50 LTR ERVL 1 288 -507 408 275 80 14 chr11 20943343 20943626 -129839927 + LTR50 LTR ERVL 346 522 -1 2132 80 0 0 chr11 20943700 20943990 -129839563 - AluY SINE Alu 0 310 21 22 56 0 0 chr11 20944102 20944138 -129839415 + AT_rich Low_complexity Low_complexity 1 36 0 515 250 26 6 chr11 20944238 20944394 -129839159 - MER103 DNA DNA -3 163 5 296 277 19 39 chr11 20944587 20944742 -129838811 + L1M4 LINE L1 3886 4037 -2109 2100 166 7 48 chr11 20944911 20945266 -129838287 - L1MB5 LINE L1 -87 6087 5752 2072 129 14 3 chr11 20945266 20945560 -129837993 + AluSx SINE Alu 1 297 -15 2100 166 7 48 chr11 20945560 20945639 -129837914 - L1MB5 LINE L1 -422 5752 5671 302 246 104 52 chr11 20945752 20945886 -129837667 + L1ME4a LINE L1 5969 6109 -12 245 344 106 37 chr11 20945918 20946191 -129837362 - L2 LINE L2 -1490 1824 1533 367 123 0 15 chr11 20946397 20946462 -129837091 - LTR54 LTR ERV1 -4 506 443 946 218 36 26 chr11 20946474 20946813 -129836740 - MER57B LTR ERV1 -80 323 1 286 181 14 14 chr11 20946923 20946995 -129836558 + CT-rich Low_complexity Low_complexity 1 72 0 1887 115 42 0 chr11 20946995 20947256 -129836297 - AluSx SINE Alu -40 272 1 1078 282 93 19 chr11 20947617 20948092 -129835461 - MLT1J LTR MaLR 0 511 2 1698 189 3 13 chr11 20949241 20949543 -129834010 - AluJo SINE Alu -13 299 1 830 284 16 29 chr11 20950032 20950275 -129833278 - MIR SINE MIR -15 247 8 2051 232 78 36 chr11 20950462 20951131 -129832422 + MER20B DNA MER1_type 2 698 -85 304 269 62 48 chr11 20951708 20951853 -129831700 + L2 LINE L2 3167 3313 0 24 32 0 0 chr11 20952135 20952166 -129831387 + AT_rich Low_complexity Low_complexity 1 31 0 282 289 21 10 chr11 20952174 20952271 -129831282 - MIR SINE MIR -31 231 134 251 53 0 26 chr11 20952271 20952309 -129831244 + (TG)n Simple_repeat Simple_repeat 2 38 0 2148 84 4 4 chr11 20952324 20952599 -129830954 - AluSg SINE Alu -15 295 21 219 196 151 74 chr11 20952604 20952712 -129830841 - MIR SINE MIR -66 142 20 923 200 6 17 chr11 20953759 20953939 -129829614 + MER45A DNA AcHobo 1 178 0 273 242 50 40 chr11 20954844 20954943 -129828610 + MIR SINE MIR 53 152 -110 289 269 32 11 chr11 20956952 20957045 -129826508 - MIR SINE MIR -60 202 108 671 186 119 83 chr11 20958004 20958467 -129825086 - LTR48 LTR ERV1 -4 781 90 744 280 40 8 chr11 20958482 20958803 -129824750 + MER57B LTR ERV1 4 310 -93 1104 154 0 6 chr11 20958804 20958979 -129824574 - FAM SINE Alu -1 174 1 264 204 0 0 chr11 20958998 20959052 -129824501 + LTR54 LTR ERV1 427 480 -30 1405 161 16 4 chr11 20959057 20959305 -129824248 - MER57A LTR ERV1 0 403 153 671 174 60 27 chr11 20959305 20959454 -129824099 - MER57A-int LTR ERV1 -1559 5978 5825 286 136 0 0 chr11 20959781 20959825 -129823728 - MER57A-int LTR ERV1 -1716 5821 5778 4652 196 64 65 chr11 20959868 20960691 -129822862 - MER57A-int LTR ERV1 -1494 3442 2620 2200 145 0 3 chr11 20960691 20961002 -129822551 + AluSx SINE Alu 1 310 -2 4652 196 64 65 chr11 20961002 20961849 -129821704 - MER57A-int LTR ERV1 -2316 2620 1841 2023 125 11 11 chr11 20961849 20962136 -129821417 + AluSx SINE Alu 1 287 -25 4652 196 64 65 chr11 20962136 20962271 -129821282 - MER57A-int LTR ERV1 -3095 1841 1707 576 147 25 189 chr11 20962365 20962603 -129820950 - MER57A-int LTR ERV1 -2869 3462 3264 759 180 10 78 chr11 20962655 20962861 -129820692 - MER57A-int LTR ERV1 -3059 3272 3081 2276 194 11 59 chr11 20962914 20963472 -129820081 - MER57A-int LTR ERV1 -6873 664 134 1747 157 50 107 chr11 20963595 20963755 -129819798 - MER57A LTR ERV1 -4 399 231 2118 142 0 0 chr11 20963755 20964058 -129819495 + AluSx SINE Alu 1 303 -9 1747 157 50 107 chr11 20964058 20964318 -129819235 - MER57A LTR ERV1 -172 231 3 397 186 0 0 chr11 20964349 20964419 -129819134 - MER34C LTR ERV1 -510 75 6 2288 116 59 9 chr11 20965086 20965730 -129817823 - L1M1 LINE L1 -684 5621 4952 1353 227 23 17 chr11 20965780 20966133 -129817420 - MER4D LTR ERV1 0 903 549 1616 150 22 0 chr11 20966169 20966443 -129817110 - MER49 LTR ERV1 -643 280 1 264 209 22 99 chr11 20966500 20966591 -129816962 + MIR SINE MIR 108 191 -71 216 235 321 0 chr11 20967495 20967576 -129815977 - L2 LINE L2 -4 3309 3203 205 133 22 22 chr11 20968179 20968224 -129815329 + A-rich Low_complexity Low_complexity 3 47 0 478 196 43 22 chr11 20970190 20970282 -129813271 - AluJo SINE Alu -92 220 127 658 91 0 4 chr11 20970374 20970478 -129813075 - L1PA5 LINE L1 -198 5963 5863 22 0 0 0 chr11 20970490 20970512 -129813041 + AT_rich Low_complexity Low_complexity 1 22 0 1682 118 118 22 chr11 20971419 20971690 -129811863 + AluSq SINE Alu 1 297 -16 207 69 0 0 chr11 20972410 20972439 -129811114 + (CA)n Simple_repeat Simple_repeat 1 29 0 372 241 141 16 chr11 20972478 20972669 -129810884 - MER5C DNA MER1_type -5 319 105 513 240 40 8 chr11 20972673 20972798 -129810755 + FLAM_A SINE Alu 1 129 -4 2734 226 55 25 chr11 20973081 20973877 -129809676 - L1ME1 LINE L1 -33 6133 5314 417 310 117 23 chr11 20974184 20974619 -129808934 - L1ME4a LINE L1 -113 6008 5533 2262 123 0 0 chr11 20974930 20975230 -129808323 - AluSx SINE Alu -12 300 1 271 303 97 0 chr11 20975336 20975531 -129808022 - L1ME4a LINE L1 -1129 5017 4804 424 331 58 84 chr11 20975583 20975928 -129807625 - L1ME4a LINE L1 -1368 4778 4456 2192 115 10 3 chr11 20975928 20976232 -129807321 - AluSx SINE Alu -6 306 1 424 331 58 84 chr11 20976232 20976526 -129807027 - L1ME4a LINE L1 -1690 4456 4156 2395 81 3 0 chr11 20976702 20976999 -129806554 + AluSp SINE Alu 1 298 -15 21 36 0 0 chr11 20977021 20977049 -129806504 + AT_rich Low_complexity Low_complexity 1 28 0 3223 208 57 33 chr11 20977358 20978858 -129804695 - L1ME1 LINE L1 -5 6161 4639 53 69 0 0 chr11 20978873 20978975 -129804578 + AT_rich Low_complexity Low_complexity 1 102 0 4772 229 49 26 chr11 20978981 20980427 -129803126 - L1ME1 LINE L1 -1498 4648 3161 243 0 0 0 chr11 20980427 20980454 -129803099 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4772 229 49 26 chr11 20980454 20980628 -129802925 - L1ME1 LINE L1 -2985 3161 2992 223 256 167 0 chr11 20980704 20980794 -129802759 - MER5C DNA MER1_type -219 105 1 2036 116 11 0 chr11 20980814 20981090 -129802463 + AluSx SINE Alu 1 279 -33 2033 162 0 0 chr11 20981449 20981757 -129801796 - AluJb SINE Alu -4 308 1 228 321 111 0 chr11 20981818 20981899 -129801654 - MIR SINE MIR -82 126 37 336 48 0 0 chr11 20981979 20982021 -129801532 + (TG)n Simple_repeat Simple_repeat 2 43 0 241 275 0 29 chr11 20983318 20983387 -129800166 - L2 LINE L2 0 3313 3247 236 250 54 36 chr11 20984349 20984461 -129799092 - MLT1J LTR MaLR -14 497 384 309 284 84 0 chr11 20984592 20984687 -129798866 - MLT1J LTR MaLR -339 172 70 410 292 130 7 chr11 20984988 20985142 -129798411 - MIR SINE MIR 0 262 90 275 322 11 0 chr11 20985617 20985704 -129797849 + CT-rich Low_complexity Low_complexity 1 88 0 621 254 98 5 chr11 20986059 20986252 -129797301 - MIR SINE MIR -32 230 20 299 280 73 7 chr11 20986732 20986866 -129796687 + MIR SINE MIR 9 136 -72 812 287 9 9 chr11 20987225 20987441 -129796112 - MIR SINE MIR -17 245 30 297 125 0 0 chr11 20987494 20987550 -129796003 + (T)n Simple_repeat Simple_repeat 1 56 0 838 209 46 98 chr11 20987550 20987945 -129795608 + MLT1H LTR MaLR 73 545 -10 218 301 58 10 chr11 20987961 20988064 -129795489 + MIR SINE MIR 70 177 -85 214 127 36 36 chr11 20988720 20988775 -129794778 + T-rich Low_complexity Low_complexity 2 56 0 613 198 107 113 chr11 20990849 20991167 -129792386 + MER46C DNA MER2_type 14 329 -9 353 345 108 0 chr11 20991383 20991522 -129792031 - MIR SINE MIR 0 262 109 1840 98 0 0 chr11 20992028 20992263 -129791290 + AluSc SINE Alu 71 305 -4 363 333 45 41 chr11 20992286 20992502 -129791051 - MIR SINE MIR -42 220 1 305 311 46 73 chr11 20992522 20992673 -129790880 - L2 LINE L2 -111 3161 3015 298 299 24 31 chr11 20992691 20992773 -129790780 - L2 LINE L2 -5 3308 3226 708 274 29 24 chr11 20992773 20992981 -129790572 + MER63A DNA MER1_type 2 210 0 298 299 24 31 chr11 20992981 20993025 -129790528 - L2 LINE L2 -87 3226 3183 5576 181 48 32 chr11 20993032 20993596 -129789957 + Charlie1a DNA MER1_type 55 608 -2153 2320 82 0 0 chr11 20993596 20993902 -129789651 - AluSg SINE Alu 0 306 1 5576 181 48 32 chr11 20993902 20994715 -129788838 + Charlie1a DNA MER1_type 608 1455 0 198 0 0 0 chr11 20994998 20995020 -129788533 + (ATCTG)n Simple_repeat Simple_repeat 1 22 0 2298 113 0 0 chr11 20995596 20995898 -129787655 + AluSx SINE Alu 1 302 -10 319 309 144 0 chr11 20996471 20996568 -129786985 + L2 LINE L2 3154 3264 -8 186 303 115 57 chr11 20996666 20996788 -129786765 - L2 LINE L2 -5 3308 3180 813 173 0 0 chr11 20997020 20997153 -129786400 + AluSq/x SINE Alu 1 133 -179 1793 183 0 3 chr11 20997158 20997453 -129786100 + AluJb SINE Alu 1 294 -18 32 0 0 0 chr11 20998175 20998207 -129785346 + AT_rich Low_complexity Low_complexity 1 32 0 304 91 0 0 chr11 20998209 20998253 -129785300 - MADE1 DNA Mariner -35 45 2 252 305 9 19 chr11 20999042 20999147 -129784406 - MIR SINE MIR -82 180 77 27 29 0 0 chr11 20999537 20999571 -129783982 + AT_rich Low_complexity Low_complexity 1 34 0 236 294 39 7 chr11 20999782 20999935 -129783618 + L1ME LINE L1 5323 5480 -682 304 324 48 28 chr11 21000032 21000177 -129783376 - MIR3 SINE MIR 0 208 61 195 191 43 21 chr11 21000684 21000731 -129782822 - MIR SINE MIR -57 205 158 405 0 0 0 chr11 21000888 21000933 -129782620 + (TG)n Simple_repeat Simple_repeat 1 45 0 379 346 78 8 chr11 21001835 21002078 -129781475 + L1MDa LINE L1 61 320 -6220 1278 190 36 0 chr11 21002216 21002437 -129781116 + AluJo SINE Alu 1 229 -83 221 0 35 0 chr11 21002438 21002467 -129781086 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 1927 156 17 0 chr11 21002485 21002773 -129780780 - AluSq SINE Alu -17 296 4 803 126 25 6 chr11 21002821 21002980 -129780573 + GA-rich Low_complexity Low_complexity 1 162 0 818 79 39 0 chr11 21003043 21003170 -129780383 - MER65A LTR ERV1 0 445 314 1801 129 79 0 chr11 21003171 21003449 -129780104 - AluSx SINE Alu -11 301 2 6206 41 1 23 chr11 21003472 21003961 -129779592 - L1PA7 LINE L1 0 6154 5656 229 0 54 27 chr11 21003961 21003998 -129779555 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2108 100 0 4 chr11 21004003 21004282 -129779271 - AluSg SINE Alu -27 283 6 6206 41 1 23 chr11 21004282 21004613 -129778940 - L1PA7 LINE L1 -502 5652 5346 1836 115 42 16 chr11 21004614 21004927 -129778626 - MER65A LTR ERV1 -124 321 1 2074 100 6 6 chr11 21005844 21006155 -129777398 + L1PA8A LINE L1 5794 6104 -27 195 42 0 0 chr11 21006160 21006184 -129777369 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 1853 181 95 75 chr11 21006187 21006910 -129776643 + MER31-int LTR ERV1 930 1667 -3269 302 233 78 35 chr11 21006892 21007008 -129776545 + MER31-int LTR ERV1 2294 2414 -2457 * 429 255 7 7 chr11 21007037 21007182 -129776371 + MER31-int LTR ERV1 1679 1823 -3113 202 274 0 0 chr11 21007571 21007622 -129775931 + L2 LINE L2 3263 3313 0 25 0 0 0 chr11 21008037 21008062 -129775491 + AT_rich Low_complexity Low_complexity 1 25 0 412 344 38 0 chr11 21008130 21008318 -129775235 + MIR SINE MIR 9 202 -60 1708 185 6 13 chr11 21008335 21008649 -129774904 + AluJb SINE Alu 1 312 0 272 273 11 0 chr11 21008666 21008754 -129774799 - MLT1L LTR MaLR 0 615 527 500 218 0 35 chr11 21011079 21011253 -129772300 + CT-rich Low_complexity Low_complexity 3 170 0 3327 143 58 16 chr11 21011963 21012587 -129770966 - MER39B LTR ERV1 0 653 4 2441 86 0 0 chr11 21012922 21013225 -129770328 - AluY SINE Alu -8 303 1 225 234 65 26 chr11 21013574 21013651 -129769902 - MER5A DNA MER1_type 0 189 110 191 259 17 17 chr11 21013972 21014030 -129769523 - MIR SINE MIR -82 180 123 258 229 0 0 chr11 21014237 21014307 -129769246 + L1ME2 LINE L1 6095 6164 0 246 62 0 0 chr11 21015242 21015274 -129768279 + (TG)n Simple_repeat Simple_repeat 2 33 0 2323 88 0 16 chr11 21016900 21017206 -129766347 - AluSx SINE Alu -11 301 1 2310 72 0 14 chr11 21017719 21018009 -129765544 - AluY SINE Alu 0 311 26 246 314 144 20 chr11 21018175 21018328 -129765225 - MER5A DNA MER1_type -4 185 14 308 336 0 27 chr11 21018337 21018447 -129765106 - MIR SINE MIR -109 153 47 333 92 92 103 chr11 21019916 21020003 -129763550 + LTR49-int LTR ERV1 1457 1542 -4789 276 211 18 18 chr11 21020005 21020062 -129763491 + MER67B LTR ERV1 146 202 -459 2849 175 74 55 chr11 21020064 21020648 -129762905 + MER31-int LTR ERV1 292 864 -4072 706 200 9 0 chr11 21020648 21020763 -129762790 + FLAM_A SINE Alu 1 116 -17 222 91 0 0 chr11 21020767 21020800 -129762753 + (CA)n Simple_repeat Simple_repeat 2 34 0 2849 175 74 55 chr11 21020800 21020917 -129762636 + MER31-int LTR ERV1 866 928 -4008 22652 142 20 19 chr11 21020924 21024873 -129758680 + L1P3 LINE L1 2 4025 -2436 195 42 0 0 chr11 21024873 21024897 -129758656 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 22652 142 20 19 chr11 21024897 21025921 -129757632 + L1P3 LINE L1 4025 5046 -1415 427 270 109 35 chr11 21026560 21026734 -129756819 - MIR SINE MIR -56 206 20 2271 119 0 3 chr11 21026878 21027189 -129756364 + AluSx SINE Alu 1 310 -2 181 189 27 0 chr11 21027276 21027313 -129756240 + L3 LINE CR1 1537 1574 -3 21 36 0 0 chr11 21028132 21028160 -129755393 + AT_rich Low_complexity Low_complexity 1 28 0 351 305 161 6 chr11 21029134 21029308 -129754245 - MIR SINE MIR -44 218 18 913 232 63 56 chr11 21029541 21029955 -129753598 + L1MC5 LINE L1 7501 7917 -44 428 288 12 44 chr11 21030994 21031154 -129752399 - MIR SINE MIR -73 189 35 470 245 135 12 chr11 21031534 21031697 -129751856 - L2 LINE L2 0 3313 3131 413 271 98 94 chr11 21031895 21032098 -129751455 + MIR SINE MIR 48 251 -11 1105 233 134 65 chr11 21032320 21032645 -129750908 + MER34 LTR ERV1 15 387 -155 1956 128 3 42 chr11 21032645 21032958 -129750595 + AluSx SINE Alu 1 301 -11 1105 233 134 65 chr11 21032958 21033126 -129750427 + MER34 LTR ERV1 387 542 0 1362 191 29 22 chr11 21033270 21033543 -129750010 + MER31-int LTR ERV1 3986 4260 -676 288 225 150 12 chr11 21033543 21033623 -129749930 + LTR37A LTR ERV1 4 94 -332 587 202 54 0 chr11 21033623 21033752 -129749801 + MER31-int LTR ERV1 4334 4469 -467 569 228 78 36 chr11 21033781 21033948 -129749605 + MER34 LTR ERV1 369 542 0 333 340 47 35 chr11 21033975 21034207 -129749346 - MLT1K LTR MaLR -285 303 69 29 47 0 0 chr11 21034314 21034357 -129749196 + AT_rich Low_complexity Low_complexity 1 43 0 552 288 0 0 chr11 21034419 21034537 -129749016 - L2 LINE L2 -8 3305 3188 375 255 166 19 chr11 21035045 21035202 -129748351 - MIR SINE MIR -17 245 66 225 282 64 0 chr11 21035208 21035286 -129748267 + MIR3 SINE MIR 125 207 -1 1553 203 3 19 chr11 21035335 21035651 -129747902 + AluJb SINE Alu 1 311 -1 902 78 9 0 chr11 21035659 21035774 -129747779 + AluSq/x SINE Alu 18 133 -179 2012 107 21 4 chr11 21035777 21036057 -129747496 + AluSx SINE Alu 1 285 -27 726 223 122 5 chr11 21036096 21036284 -129747269 - MIR SINE MIR -41 221 12 245 164 0 18 chr11 21037125 21037180 -129746373 + CT-rich Low_complexity Low_complexity 5 58 0 24 0 0 0 chr11 21037713 21037737 -129745816 + AT_rich Low_complexity Low_complexity 1 24 0 1050 76 8 0 chr11 21037737 21037868 -129745685 + AluSq/x SINE Alu 1 132 -180 297 325 172 7 chr11 21038040 21038191 -129745362 + MER5B DNA MER1_type 1 176 -2 338 353 75 29 chr11 21038238 21038411 -129745142 - MIR SINE MIR -62 200 20 2743 105 21 16 chr11 21038679 21039052 -129744501 - THE1C LTR MaLR 0 375 1 1449 232 168 20 chr11 21039057 21039497 -129744056 + MLT1D LTR MaLR 1 505 0 325 278 56 0 chr11 21040005 21040095 -129743458 - L2 LINE L2 -17 3296 3202 312 238 48 12 chr11 21040137 21040221 -129743332 - MIR SINE MIR -162 100 14 1560 266 61 18 chr11 21040227 21040719 -129742834 - LTR33 LTR ERVL 0 521 9 1253 179 95 8 chr11 21040719 21040981 -129742572 + AluJb SINE Alu 21 305 -7 255 231 47 77 chr11 21040993 21041227 -129742326 + MER113 DNA MER1_type? 1 227 -294 209 324 40 81 chr11 21041277 21041450 -129742103 + L2 LINE L2 2790 2955 -359 21 0 0 0 chr11 21041898 21041919 -129741634 + AT_rich Low_complexity Low_complexity 1 21 0 282 322 122 17 chr11 21042224 21042339 -129741214 + LTR33 LTR ERVL 32 158 -363 230 276 8 0 chr11 21042826 21042903 -129740650 - MIR SINE MIR -63 145 67 227 327 0 0 chr11 21043287 21043339 -129740214 + L2 LINE L2 3211 3262 -10 616 219 118 105 chr11 21043363 21043739 -129739814 - MLT1J LTR MaLR -3 468 123 2340 42 38 3 chr11 21043741 21044080 -129739473 + MER11A LTR ERVK 1 445 -821 229 65 0 0 chr11 21044094 21044140 -129739413 - LTR66 LTR ERVL -171 439 394 564 152 55 0 chr11 21044152 21044317 -129739236 + (TA)n Simple_repeat Simple_repeat 1 174 0 1872 187 29 40 chr11 21044349 21044560 -129738993 + L1ME2 LINE L1 5643 5855 -309 635 169 104 122 chr11 21044560 21044839 -129738714 - ORSL DNA AcHobo 0 275 2 1872 187 29 40 chr11 21044839 21045076 -129738477 + L1ME2 LINE L1 5855 6086 -78 1836 154 50 85 chr11 21046423 21046825 -129736728 - MLT1B LTR MaLR 0 390 3 328 311 5 11 chr11 21046984 21047090 -129736463 + MER5A DNA MER1_type 55 167 -15 1383 184 55 52 chr11 21047566 21047626 -129735927 + MER58B DNA MER1_type 32 90 -2330 2536 55 0 0 chr11 21047626 21047917 -129735636 - AluY SINE Alu -20 291 1 1383 184 55 52 chr11 21047917 21048165 -129735388 + MER58B DNA MER1_type 90 341 0 1766 123 9 93 chr11 21048380 21048704 -129734849 - AluJb SINE Alu -15 297 1 784 155 52 0 chr11 21049094 21049210 -129734343 - FLAM_A SINE Alu -11 122 1 610 196 108 13 chr11 21051083 21051241 -129732312 + L1ME3A LINE L1 5998 6170 0 1678 178 78 24 chr11 21051275 21051645 -129731908 - MLT1D LTR MaLR 0 505 116 517 156 80 13 chr11 21051849 21051954 -129731599 - MLT1D LTR MaLR -414 91 1 348 302 145 0 chr11 21052016 21052175 -129731378 + MIR3 SINE MIR 16 197 -11 25 0 0 0 chr11 21052231 21052256 -129731297 + AT_rich Low_complexity Low_complexity 1 25 0 2070 117 11 0 chr11 21052258 21052539 -129731014 + AluSx SINE Alu 1 284 -28 262 255 133 20 chr11 21052881 21052979 -129730574 - L2 LINE L2 -1 3312 3204 263 241 0 0 chr11 21053044 21053102 -129730451 - Charlie7 DNA MER1_type -97 2515 2458 21 0 0 0 chr11 21053749 21053770 -129729783 + AT_rich Low_complexity Low_complexity 1 21 0 1467 137 164 8 chr11 21054089 21054351 -129729202 - AluSg SINE Alu -7 303 1 810 335 175 19 chr11 21054559 21055182 -129728371 - L3 LINE CR1 -30 1547 828 332 295 184 9 chr11 21056272 21056489 -129727064 + L2 LINE L2 2688 2942 -372 1363 241 110 37 chr11 21056552 21057090 -129726463 + L2 LINE L2 2511 3088 -225 21 36 0 0 chr11 21057423 21057451 -129726102 + AT_rich Low_complexity Low_complexity 1 28 0 372 265 113 32 chr11 21057583 21057819 -129725734 + MIR SINE MIR 14 262 0 210 82 0 61 chr11 21057871 21057920 -129725633 + (TCC)n Simple_repeat Simple_repeat 3 48 0 955 157 60 74 chr11 21058173 21058389 -129725164 + MER20 DNA MER1_type 7 219 0 625 241 59 23 chr11 21058496 21058716 -129724837 - L1ME2 LINE L1 0 6164 5937 1366 206 159 61 chr11 21059076 21059323 -129724230 - MLT1D LTR MaLR 0 505 284 2377 97 7 0 chr11 21059323 21059633 -129723920 - AluSx SINE Alu 0 312 1 1366 206 159 61 chr11 21059633 21059845 -129723708 - MLT1D LTR MaLR -221 284 1 295 265 86 8 chr11 21059962 21060079 -129723474 - MIR SINE MIR -7 255 130 456 249 54 63 chr11 21060081 21060286 -129723267 - L1MC4 LINE L1 -4 8038 7836 316 372 16 8 chr11 21060317 21060446 -129723107 - MIR SINE MIR -113 149 20 547 206 27 68 chr11 21060763 21060909 -129722644 + HAL1 LINE L1 1667 1806 -701 272 216 95 0 chr11 21060988 21061062 -129722491 - MER31A LTR ERV1 -8 477 397 1213 180 111 41 chr11 21061081 21061243 -129722310 - MER31A LTR ERV1 -46 435 286 2401 175 44 7 chr11 21061243 21061654 -129721899 + MSTB LTR MaLR 1 426 0 1213 180 111 41 chr11 21061654 21061865 -129721688 - MER31A LTR ERV1 -195 286 1 1821 148 36 16 chr11 21061949 21062254 -129721299 + AluSx SINE Alu 2 312 0 533 251 38 67 chr11 21062256 21062359 -129721194 + HAL1 LINE L1 1973 2077 -430 2367 88 0 3 chr11 21062359 21062656 -129720897 + AluSx SINE Alu 1 296 -16 533 251 38 67 chr11 21062656 21062791 -129720762 + HAL1 LINE L1 2077 2204 -303 459 0 0 0 chr11 21062965 21063016 -129720537 + (TG)n Simple_repeat Simple_repeat 2 52 0 2086 120 17 7 chr11 21063210 21063511 -129720042 + AluSq SINE Alu 1 304 -9 511 332 50 73 chr11 21063634 21064308 -129719245 + L2 LINE L2 2570 3235 -37 21 0 0 0 chr11 21065726 21065747 -129717806 + AT_rich Low_complexity Low_complexity 1 21 0 2184 114 0 3 chr11 21066262 21066552 -129717001 + AluSx SINE Alu 1 289 -23 696 277 252 8 chr11 21066873 21067270 -129716283 + L2 LINE L2 2820 3313 0 300 250 68 68 chr11 21067288 21067388 -129716165 + MIR SINE MIR 111 213 -49 2071 101 10 23 chr11 21067388 21067694 -129715859 + AluY SINE Alu 1 302 -9 300 250 68 68 chr11 21067694 21067741 -129715812 + MIR SINE MIR 212 258 -4 867 227 126 70 chr11 21067869 21068212 -129715341 + MLT1G1 LTR MaLR 2 399 -156 2145 125 0 0 chr11 21068212 21068507 -129715046 - AluSx SINE Alu -17 295 1 867 227 126 70 chr11 21068507 21068674 -129714879 + MLT1G1 LTR MaLR 399 555 0 464 272 0 10 chr11 21068713 21068816 -129714737 - MIR SINE MIR -98 164 63 1918 147 7 0 chr11 21069431 21069764 -129713789 + AluSx SINE Alu 1 335 0 232 338 59 0 chr11 21069765 21069833 -129713720 - MIR SINE MIR -179 83 12 2708 195 58 4 chr11 21070490 21071023 -129712530 - MER68 LTR ERV1 0 562 1 2684 43 0 0 chr11 21071067 21071368 -129712185 + AluY SINE Alu 1 301 -10 2467 162 27 11 chr11 21071374 21071813 -129711740 + L1MB8 LINE L1 5663 6108 -70 2129 126 0 3 chr11 21071833 21072126 -129711427 + AluSx SINE Alu 1 292 -20 46 33 0 0 chr11 21072129 21072189 -129711364 + AT_rich Low_complexity Low_complexity 1 60 0 1486 204 30 50 chr11 21073185 21073581 -129709972 - MLT1B LTR MaLR 0 390 3 195 100 0 0 chr11 21073624 21073654 -129709899 + (T)n Simple_repeat Simple_repeat 1 30 0 235 314 31 78 chr11 21074032 21074223 -129709330 - MER5A DNA MER1_type 0 189 8 535 213 63 116 chr11 21074531 21074799 -129708754 - MIR SINE MIR 0 262 9 300 219 49 37 chr11 21075840 21075922 -129707631 - L2 LINE L2 0 3313 3231 2276 116 0 0 chr11 21075998 21076301 -129707252 + AluSx SINE Alu 1 303 -9 1125 79 7 0 chr11 21076838 21076978 -129706575 + AluSp SINE Alu 51 191 -122 1980 99 0 0 chr11 21077078 21077331 -129706222 - AluSx SINE Alu -59 253 1 583 231 20 27 chr11 21077332 21077479 -129706074 - MIR SINE MIR -102 160 15 205 226 38 0 chr11 21078972 21079025 -129704528 + MIR3 SINE MIR 151 205 -3 1927 157 7 0 chr11 21080268 21080562 -129702991 + AluSx SINE Alu 1 296 -16 742 135 0 0 chr11 21081096 21081200 -129702353 + AluY SINE Alu 2 105 -206 1941 115 0 0 chr11 21081202 21081463 -129702090 + AluY SINE Alu 37 297 -14 634 105 0 0 chr11 21081643 21081729 -129701824 - AluS SINE Alu -226 87 2 1557 111 5 0 chr11 21083353 21083560 -129699993 + AluY SINE Alu 1 208 -103 322 196 21 41 chr11 21083626 21083723 -129699830 - L1M4 LINE L1 -3643 2503 2409 423 0 0 0 chr11 21134634 21134681 -129648872 + (TA)n Simple_repeat Simple_repeat 1 47 0 329 151 0 0 chr11 21134681 21134734 -129648819 - Tigger1 DNA MER2_type -2365 53 1 1291 182 70 22 chr11 21134734 21135047 -129648506 + MLT1A1 LTR MaLR 38 365 0 1802 245 99 6 chr11 21135051 21135586 -129647967 + L2 LINE L2 2033 2617 -697 917 193 36 5 chr11 21135632 21135824 -129647729 + Charlie1a DNA MER1_type 30 227 -1228 1143 108 0 0 chr11 21135824 21136000 -129647553 - AluSp SINE Alu 0 310 135 692 208 15 8 chr11 21136046 21136196 -129647357 + FLAM_A SINE Alu 1 151 0 2395 106 0 0 chr11 21136202 21136514 -129647039 + AluSx SINE Alu 1 312 0 2574 188 98 19 chr11 21136519 21137353 -129646200 + Charlie1a DNA MER1_type 282 1236 -219 1163 176 21 47 chr11 21137353 21137586 -129645967 + AluJb SINE Alu 1 227 -85 513 301 78 30 chr11 21137960 21138359 -129645194 + L1ME LINE L1 5366 5783 -379 937 176 18 12 chr11 21138402 21138572 -129644981 + AluJo SINE Alu 112 282 -30 229 123 62 92 chr11 21139960 21140025 -129643528 + L1ME2 LINE L1 653 715 -5681 649 270 205 37 chr11 21140088 21140601 -129642952 + L1ME2 LINE L1 874 1299 -5097 2012 151 0 3 chr11 21140601 21140900 -129642653 + AluSx SINE Alu 1 298 -14 649 270 205 37 chr11 21140900 21141474 -129642079 + L1ME2 LINE L1 1299 2144 -4252 1171 253 58 27 chr11 21141609 21142223 -129641330 + L1ME2 LINE L1 5555 6224 -9 300 300 61 61 chr11 21142548 21142728 -129640825 - MIR SINE MIR -73 189 10 2173 116 0 3 chr11 21143767 21144061 -129639492 + AluSx SINE Alu 1 293 -19 24 53 0 0 chr11 21144127 21144165 -129639388 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr11 21144236 21144258 -129639295 + AT_rich Low_complexity Low_complexity 1 22 0 1020 215 18 9 chr11 21146106 21146325 -129637228 + MER58A DNA MER1_type 4 224 0 2246 98 3 0 chr11 21146445 21146741 -129636812 + AluSq SINE Alu 1 297 -16 1843 154 0 3 chr11 21147179 21147471 -129636082 - AluJb SINE Alu -21 291 1 1997 67 0 0 chr11 21147894 21148169 -129635384 + L1PA5 LINE L1 5880 6154 0 307 274 69 20 chr11 21148703 21148805 -129634748 + L2 LINE L2 28 134 -3180 580 298 77 26 chr11 21148805 21149154 -129634399 + L2 LINE L2 253 619 -2695 385 226 0 0 chr11 21149178 21149262 -129634291 - L1ME2 LINE L1 -18 6146 6063 886 223 196 12 chr11 21149264 21149610 -129633943 + L2 LINE L2 609 1018 -2296 503 226 200 5 chr11 21149619 21149814 -129633739 + L2 LINE L2 1600 1832 -1482 1679 188 47 43 chr11 21149817 21150052 -129633501 - L1ME2 LINE L1 -16 6148 5916 1401 176 23 106 chr11 21150052 21150266 -129633287 - MLT1A1 LTR MaLR 0 365 198 1623 140 3 81 chr11 21150266 21150588 -129632965 + AluJo SINE Alu 1 297 -15 1401 176 23 106 chr11 21150588 21150771 -129632782 - MLT1A1 LTR MaLR -167 198 1 1679 188 47 43 chr11 21150771 21151003 -129632550 - L1ME2 LINE L1 -248 5916 5679 668 206 100 0 chr11 21151003 21151163 -129632390 + L2 LINE L2 1832 2007 -1307 972 129 139 21 chr11 21151208 21151402 -129632151 - Tigger1 DNA MER2_type 0 2418 2202 433 145 15 99 chr11 21151503 21151571 -129631982 + Charlie1a DNA MER1_type 1335 1388 -1373 2129 95 7 20 chr11 21151571 21151875 -129631678 - AluSx SINE Alu -12 300 1 433 145 15 99 chr11 21151875 21151937 -129631616 + Charlie1a DNA MER1_type 1388 1454 -1 981 254 152 22 chr11 21151939 21152579 -129630974 + L2 LINE L2 2606 3313 0 2108 138 0 3 chr11 21153217 21153529 -129630024 + AluSx SINE Alu 1 311 -1 25 0 0 0 chr11 21154563 21154588 -129628965 + AT_rich Low_complexity Low_complexity 1 25 0 2068 116 0 3 chr11 21154863 21155174 -129628379 - AluY SINE Alu 0 310 1 240 325 9 44 chr11 21155468 21155582 -129627971 - MER5A DNA MER1_type -35 154 45 1394 236 20 61 chr11 21155715 21156155 -129627398 + MER63B DNA MER1_type 7 428 -8 1958 148 30 0 chr11 21156471 21156774 -129626779 - AluJo SINE Alu 0 312 1 1028 241 27 31 chr11 21156827 21157084 -129626469 + MIR SINE MIR 7 262 0 300 326 20 0 chr11 21157709 21157807 -129625746 + L1ME LINE L1 5322 5421 -2387 2175 126 0 40 chr11 21157843 21158169 -129625384 + AluSq SINE Alu 1 313 0 317 345 198 0 chr11 21158238 21158415 -129625138 + L1ME LINE L1 5490 5701 -420 555 103 0 0 chr11 21158466 21158567 -129624986 - Alu SINE Alu 0 306 206 620 111 0 0 chr11 21158570 21158660 -129624893 + AluJ/FRAM SINE Alu 218 307 -5 302 179 18 0 chr11 21158705 21158761 -129624792 - L2 LINE L2 0 3272 3216 1493 117 5 5 chr11 21158792 21158998 -129624555 - AluSx SINE Alu -105 207 2 422 277 68 68 chr11 21159053 21159273 -129624280 + MLT1H LTR MaLR 101 320 -229 309 26 0 0 chr11 21159306 21159344 -129624209 + (CA)n Simple_repeat Simple_repeat 2 39 0 344 135 14 0 chr11 21159344 21159418 -129624135 + (TA)n Simple_repeat Simple_repeat 2 76 0 271 242 0 0 chr11 21159424 21159486 -129624067 + MLT1H LTR MaLR 506 567 0 381 304 83 4 chr11 21159794 21160104 -129623449 + LTR33A LTR ERVL 147 506 -17 1924 147 34 9 chr11 21160117 21160443 -129623110 - MER1B DNA MER1_type 0 339 6 21 57 0 0 chr11 21161555 21161590 -129621963 + AT_rich Low_complexity Low_complexity 1 35 0 889 177 50 5 chr11 21161606 21161804 -129621749 - L1MA9 LINE L1 -38 7295 7089 848 138 53 13 chr11 21162291 21162443 -129621110 + MIR SINE MIR 90 247 -15 9754 160 54 32 chr11 21163419 21164057 -129619496 - L1MA9 LINE L1 -505 6816 6194 5636 104 21 24 chr11 21164057 21164614 -129618939 - L1PA14 LINE L1 -12 6149 5592 2001 161 3 0 chr11 21164614 21164919 -129618634 - AluSx SINE Alu -6 306 1 5636 104 21 24 chr11 21164919 21166027 -129617526 - L1PA14 LINE L1 -569 5592 4507 9754 160 54 32 chr11 21166027 21166234 -129617319 - L1MA9 LINE L1 -1127 6194 5993 1503 177 0 0 chr11 21166234 21166477 -129617076 - AluJb SINE Alu -45 267 25 9754 160 54 32 chr11 21166477 21166539 -129617014 - L1MA9 LINE L1 -1328 5993 5934 180 0 0 0 chr11 21166539 21166559 -129616994 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 9754 160 54 32 chr11 21166559 21168375 -129615178 - L1MA9 LINE L1 -1387 5934 4038 8211 171 89 50 chr11 21168362 21168587 -129614966 - L1MA9 LINE L1 -5194 1974 1759 * 2535 57 0 0 chr11 21168587 21168888 -129614665 - AluY SINE Alu -10 301 1 8211 171 89 50 chr11 21168888 21170562 -129612991 - L1MA9 LINE L1 -5409 1759 1 227 329 0 0 chr11 21170566 21170645 -129612908 - HsTC2 DNA Tc2 -1817 81 3 336 295 100 26 chr11 21170647 21171217 -129612336 + L1M4 LINE L1 4496 5131 -1015 809 174 7 14 chr11 21171217 21171361 -129612192 + FRAM SINE Alu 9 151 -25 1086 53 0 8 chr11 21171363 21171496 -129612057 + AluY SINE Alu 1 132 -179 239 214 12 12 chr11 21171504 21171588 -129611965 + L1M4 LINE L1 5118 5201 -945 23 92 0 0 chr11 21171672 21171737 -129611816 + AT_rich Low_complexity Low_complexity 1 65 0 181 270 0 0 chr11 21171738 21171775 -129611778 - L2 LINE L2 -15 3257 3221 759 222 18 0 chr11 21171802 21171969 -129611584 - L1M4 LINE L1 -887 5259 5090 327 277 188 0 chr11 21172126 21172238 -129611315 - L1MC4a LINE L1 -990 6818 6686 2356 49 0 7 chr11 21172264 21172599 -129610954 - AluY SINE Alu 0 333 1 2212 112 0 0 chr11 21172781 21173085 -129610468 - AluSq SINE Alu -9 304 1 437 254 16 8 chr11 21173510 21173632 -129609921 - L1MC4a LINE L1 -1881 5927 5805 315 221 189 0 chr11 21173778 21173900 -129609653 - L1MC4a LINE L1 -2054 5754 5610 479 162 0 0 chr11 21173907 21173981 -129609572 + AluJ/FLAM SINE Alu 1 74 -238 418 223 46 54 chr11 21174018 21174148 -129609405 - L1MC4a LINE L1 -2215 5593 5465 364 141 141 0 chr11 21175285 21175356 -129608197 - L2 LINE L2 0 3313 3233 234 159 0 23 chr11 21175370 21175414 -129608139 - L1MC/D LINE L1 -1890 5918 5876 2018 253 134 4 chr11 21175418 21176149 -129607404 - L1MC4a LINE L1 -3138 3008 2183 648 233 67 137 chr11 21176521 21177118 -129606435 - L1ME3A LINE L1 -7 6163 5609 479 270 53 7 chr11 21177590 21177742 -129605811 + L1ME LINE L1 5524 5682 -439 704 181 42 122 chr11 21178225 21178463 -129605090 + MER20 DNA MER1_type 1 219 0 849 289 52 7 chr11 21180793 21181080 -129602473 - L2 LINE L2 0 3313 3014 22 0 0 0 chr11 21181188 21181210 -129602343 + AT_rich Low_complexity Low_complexity 1 22 0 481 288 25 6 chr11 21182306 21182466 -129601087 + MER103 DNA DNA 1 163 -3 1067 167 27 41 chr11 21182554 21182775 -129600778 - MER20 DNA MER1_type -1 218 1 1806 111 60 57 chr11 21184190 21184488 -129599065 + AluSx SINE Alu 1 299 -13 1039 184 39 26 chr11 21184741 21184974 -129598579 - MER46A DNA MER2_type 0 236 1 210 348 11 0 chr11 21185008 21185097 -129598456 - MIR SINE MIR -12 250 161 222 298 70 0 chr11 21186032 21186089 -129597464 - MIR SINE MIR -5 257 197 254 372 18 9 chr11 21186118 21186344 -129597209 + HAL1b LINE L1 684 911 -437 398 291 9 0 chr11 21186439 21186549 -129597004 + L1ME1 LINE L1 6055 6165 -1 318 347 169 20 chr11 21186663 21187118 -129596435 + L1M4 LINE L1 4711 5233 -913 336 233 83 25 chr11 21187168 21187288 -129596265 + L1M LINE L1 5292 5418 -2390 1392 208 116 61 chr11 21187291 21187862 -129595691 - L1M4 LINE L1 -1052 5094 4493 1437 140 8 8 chr11 21187866 21188102 -129595451 - AluSg SINE Alu -11 299 64 333 244 150 142 chr11 21188345 21188591 -129594962 + MIR SINE MIR 9 256 -6 968 230 9 31 chr11 21189963 21190189 -129593364 - MER58A DNA MER1_type 0 224 4 275 254 28 28 chr11 21190288 21190359 -129593194 - MER91C DNA MER1_type -28 112 42 774 206 83 17 chr11 21190426 21190606 -129592947 + MER58A DNA MER1_type 33 224 0 768 329 119 49 chr11 21191452 21192514 -129591039 + L2 LINE L2 2096 3270 -2 1838 78 4 8 chr11 21193880 21194123 -129589430 - AluSc SINE Alu -36 273 32 189 94 0 0 chr11 21195371 21195403 -129588150 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 229 304 113 78 chr11 21195982 21196186 -129587367 + MIR SINE MIR 6 216 -46 30 69 0 0 chr11 21196205 21196263 -129587290 + AT_rich Low_complexity Low_complexity 1 58 0 26 0 0 0 chr11 21196346 21196372 -129587181 + AT_rich Low_complexity Low_complexity 1 26 0 306 333 33 0 chr11 21197137 21197257 -129586296 - LTR67 LTR ERVL -2 555 432 259 284 63 0 chr11 21197471 21197566 -129585987 - LTR67 LTR ERVL -357 200 100 444 282 65 0 chr11 21198245 21198369 -129585184 - MIR SINE MIR -7 255 124 1800 149 11 7 chr11 21199351 21199656 -129583897 - AluSx SINE Alu 0 306 1 921 163 153 24 chr11 21200532 21200741 -129582812 - MER46A DNA MER2_type 0 236 1 1536 173 53 0 chr11 21200964 21201230 -129582323 - Tigger3(Golem) DNA MER2_type 0 3038 69 13504 142 44 31 chr11 21201230 21204615 -129578938 - L1PA11 LINE L1 -3 7609 4173 2040 217 99 50 chr11 21204615 21205700 -129577853 - L1PA11 LINE L1 -4873 2711 188 3801 123 41 12 chr11 21205700 21206287 -129577266 - LTR10E LTR ERV1 -29 604 1 892 244 0 0 chr11 21206287 21206480 -129577073 - L1PA11 LINE L1 -7386 195 3 486 125 56 0 chr11 21206482 21206554 -129576999 - Tigger3(Golem) DNA MER2_type -2952 77 2 1908 108 0 70 chr11 21206646 21206960 -129576593 - AluSx SINE Alu -12 300 9 1201 122 11 21 chr11 21207094 21207283 -129576270 + AluSq SINE Alu 107 293 -20 526 288 165 13 chr11 21207546 21207855 -129575698 - L1ME LINE L1 -5094 976 621 509 184 199 73 chr11 21208006 21208212 -129575341 - MER110A LTR ERV1 -4 464 233 1773 132 73 0 chr11 21208216 21208488 -129575065 + AluSx SINE Alu 1 292 -20 227 247 247 0 chr11 21208613 21208698 -129574855 - MER110A LTR ERV1 -339 129 24 598 127 27 36 chr11 21209363 21209473 -129574080 + FRAM SINE Alu 55 163 -13 201 320 104 40 chr11 21210180 21210305 -129573248 - L2 LINE L2 -1 3271 3139 313 205 33 86 chr11 21210362 21210513 -129573040 + L1MC5 LINE L1 7627 7769 -192 685 242 165 16 chr11 21210702 21210950 -129572603 + L1ME3A LINE L1 5591 5875 -295 421 195 171 0 chr11 21210967 21211049 -129572504 + AluJ/FLAM SINE Alu 1 96 -206 639 283 16 11 chr11 21211049 21211233 -129572320 + L1ME3A LINE L1 5962 6146 -24 525 344 123 40 chr11 21211465 21211895 -129571658 - L2 LINE L2 -575 2739 2274 283 401 88 6 chr11 21214531 21214713 -129568840 - L2 LINE L2 -5 3267 3071 244 336 91 60 chr11 21215080 21215345 -129568208 - L2 LINE L2 -42 3230 2958 1931 117 71 22 chr11 21215345 21215669 -129567884 + THE1B LTR MaLR 1 340 -24 290 290 90 0 chr11 21216100 21216200 -129567353 + L1MEd LINE L1 607 715 -5490 319 247 93 52 chr11 21216532 21216824 -129566729 + L1MEd LINE L1 1074 1261 -4852 * 2213 146 153 9 chr11 21216815 21217274 -129566279 + L1MB8 LINE L1 5639 6163 -15 354 257 40 0 chr11 21217417 21217518 -129566035 - L1ME3A LINE L1 -64 6106 6002 331 273 32 92 chr11 21217609 21217720 -129565833 + L1MEd LINE L1 1538 1654 -4742 2051 147 0 0 chr11 21217720 21218026 -129565527 + AluSx SINE Alu 1 306 -6 331 273 32 92 chr11 21218026 21218196 -129565357 + L1MEd LINE L1 1654 1802 -4594 928 203 155 19 chr11 21218303 21218613 -129564940 + L1ME3A LINE L1 5799 6150 -20 711 190 0 16 chr11 21220748 21220869 -129562684 + FLAM_A SINE Alu 11 129 -13 337 125 0 0 chr11 21221437 21221485 -129562068 + Alu SINE Alu 1 48 -255 293 255 148 9 chr11 21221739 21221912 -129561641 - L1ME LINE L1 -4467 1613 1395 1278 237 146 23 chr11 21221915 21222581 -129560972 - L1ME LINE L1 -4983 1097 386 348 343 35 6 chr11 21222668 21222840 -129560713 - L1ME LINE L1 -5573 497 321 184 352 110 0 chr11 21222956 21223047 -129560506 - L2 LINE L2 -5 3308 3208 373 247 0 32 chr11 21223116 21223209 -129560344 - L2 LINE L2 -3 3269 3180 1323 126 0 0 chr11 21223722 21223897 -129559656 + AluSg SINE Alu 1 175 -135 353 67 0 0 chr11 21223901 21223946 -129559607 + AluSg/x SINE Alu 86 130 -170 852 160 104 0 chr11 21223946 21224090 -129559463 + AluJo/FRAM SINE Alu 137 295 -7 317 297 61 42 chr11 21224312 21224477 -129559076 - MLT1H LTR MaLR 0 549 382 1902 115 50 4 chr11 21225292 21225571 -129557982 - AluSx SINE Alu -20 292 1 442 139 28 14 chr11 21225894 21225966 -129557587 + AluJ/FLAM SINE Alu 2 74 -238 1665 91 59 0 chr11 21225973 21226192 -129557361 - AluSq SINE Alu -12 301 70 991 185 44 36 chr11 21226294 21226543 -129557010 + AluJo SINE Alu 42 292 -20 592 170 100 75 chr11 21226556 21226756 -129556797 + L1MEc LINE L1 2166 2370 -4026 2170 226 71 24 chr11 21227019 21227693 -129555860 + L1M4 LINE L1 4342 5047 -1099 2647 213 102 32 chr11 21230275 21231093 -129552460 - L1ME1 LINE L1 -16 6150 5276 2157 234 115 18 chr11 21231099 21231589 -129551964 - L1ME1 LINE L1 -1192 4954 4513 234 0 0 0 chr11 21231589 21231615 -129551938 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 534 16 0 0 chr11 21231614 21231677 -129551876 + (GA)n Simple_repeat Simple_repeat 1 63 0 2157 234 115 18 chr11 21231615 21231678 -129551875 - L1ME1 LINE L1 -1633 4513 4458 1812 158 4 0 chr11 21231678 21231957 -129551596 - AluSx SINE Alu -32 280 1 2157 234 115 18 chr11 21231957 21232228 -129551325 - L1ME1 LINE L1 -1688 4458 4117 773 262 74 9 chr11 21232903 21233132 -129550421 + MIR SINE MIR 8 251 -11 255 313 104 0 chr11 21234175 21234309 -129549244 + L2 LINE L2 3146 3293 -20 2030 112 10 17 chr11 21234417 21234711 -129548842 + AluSx SINE Alu 1 292 -20 2020 99 4 0 chr11 21234748 21235010 -129548543 + AluSx SINE Alu 1 263 -49 648 105 0 0 chr11 21235011 21235097 -129548456 + Alu SINE Alu 221 306 -6 39 88 0 0 chr11 21236170 21236272 -129547281 + AT_rich Low_complexity Low_complexity 1 102 0 1546 185 36 21 chr11 21236277 21236558 -129546995 + AluJo SINE Alu 5 289 -23 1503 171 70 0 chr11 21236584 21236841 -129546712 + AluJo SINE Alu 1 275 -37 398 226 63 28 chr11 21237062 21237238 -129546315 + MIR SINE MIR 8 238 -24 304 281 9 44 chr11 21237815 21237929 -129545624 + HAL1b LINE L1 1232 1341 -7 479 257 133 58 chr11 21238105 21238211 -129545342 - MIR SINE MIR 0 262 165 2160 120 0 0 chr11 21238211 21238515 -129545038 - AluSx SINE Alu 0 304 1 479 257 133 58 chr11 21238515 21238633 -129544920 - MIR SINE MIR -97 165 20 188 305 96 51 chr11 21238760 21238937 -129544616 + MIR SINE MIR 2 186 -76 1518 210 35 3 chr11 21239191 21239477 -129544076 + AluJb SINE Alu 1 295 -17 262 232 18 0 chr11 21239522 21239578 -129543975 - L2 LINE L2 0 3272 3216 215 262 16 16 chr11 21239704 21239765 -129543788 - L2 LINE L2 -220 3052 2992 900 195 17 0 chr11 21239848 21240022 -129543531 - MER5A DNA MER1_type 0 189 13 377 316 113 66 chr11 21240730 21241321 -129542232 - L1MC4a LINE L1 -453 5717 5315 511 92 0 6 chr11 21241439 21241700 -129541853 + AluSx SINE Alu 1 312 0 283 293 13 115 chr11 21241840 21241997 -129541556 - MIR3 SINE MIR -35 173 33 387 291 128 11 chr11 21242189 21242368 -129541185 + MIR SINE MIR 63 262 0 2142 148 0 0 chr11 21242831 21243142 -129540411 - AluSx SINE Alu -1 311 1 248 279 16 25 chr11 21243149 21243271 -129540282 + LTR16C LTR ERVL 369 489 -2 2451 117 43 6 chr11 21243669 21244020 -129539533 - THE1B LTR MaLR 0 364 1 232 333 39 39 chr11 21244389 21244491 -129539062 + L2 LINE L2 2983 3084 -188 215 330 91 0 chr11 21244577 21244665 -129538888 + L2 LINE L2 3177 3272 0 398 295 90 0 chr11 21244790 21244912 -129538641 + L2 LINE L2 3181 3313 0 237 330 28 9 chr11 21245257 21245363 -129538190 - HAL1b LINE L1 -45 1303 1196 1146 262 133 18 chr11 21245386 21245837 -129537716 - MLT1J LTR MaLR -8 503 1 556 197 7 61 chr11 21245947 21246094 -129537459 + MIR SINE MIR 120 258 -4 424 283 110 42 chr11 21246094 21246402 -129537151 - L1MC4a LINE L1 -1906 5902 5574 248 300 0 67 chr11 21246435 21246525 -129537028 - L2 LINE L2 -3 3269 3186 675 266 108 0 chr11 21246770 21246973 -129536580 + MIR SINE MIR 15 239 -23 5135 74 11 11 chr11 21247028 21247229 -129536324 - L1PA10 LINE L1 0 6168 5968 6526 89 193 34 chr11 21247229 21248321 -129535232 + MER11A LTR ERVK 1 1266 0 5135 74 11 11 chr11 21248321 21248770 -129534783 - L1PA10 LINE L1 -199 5969 5518 209 316 44 21 chr11 21249131 21249293 -129534260 - L2 LINE L2 -287 2985 2817 511 337 31 10 chr11 21249533 21249729 -129533824 - MIR SINE MIR -3 259 60 566 295 12 18 chr11 21250715 21250897 -129532656 + MIR SINE MIR 35 215 -47 198 0 0 0 chr11 21250924 21250946 -129532607 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 227 319 29 0 chr11 21251113 21251182 -129532371 + MIR SINE MIR 66 136 -126 1178 188 25 46 chr11 21251198 21251469 -129532084 + L1MB8 LINE L1 5018 5293 -885 2273 96 0 0 chr11 21251469 21251792 -129531761 + AluSx SINE Alu 1 323 0 1178 188 25 46 chr11 21251792 21251896 -129531657 + L1MB8 LINE L1 5293 5398 -780 1927 129 18 7 chr11 21251896 21252175 -129531378 + AluSx SINE Alu 1 282 -30 189 0 0 0 chr11 21252180 21252201 -129531352 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1178 188 25 46 chr11 21252201 21252884 -129530669 + L1MB8 LINE L1 5402 6143 -35 486 200 267 33 chr11 21253118 21253328 -129530225 - MIR SINE MIR -2 260 2 369 300 17 41 chr11 21254576 21254813 -129528740 + CT-rich Low_complexity Low_complexity 1 231 0 203 272 29 19 chr11 21255922 21256025 -129527528 + MIR3 SINE MIR 101 204 -4 922 221 42 27 chr11 21256306 21256569 -129526984 - MER20B DNA MER1_type -14 769 503 234 284 19 37 chr11 21256817 21256979 -129526574 + (CATATA)n Simple_repeat Simple_repeat 2 160 0 255 299 31 31 chr11 21257120 21257217 -129526336 - MER20B DNA MER1_type -302 481 385 2109 219 24 50 chr11 21257233 21257814 -129525739 + L1ME1 LINE L1 5615 6183 -1 1351 272 14 22 chr11 21257823 21258180 -129525373 - MER20B DNA MER1_type -429 354 1 343 291 51 0 chr11 21258194 21258311 -129525242 - MIR3 SINE MIR -72 136 14 189 161 0 0 chr11 21258908 21258939 -129524614 + L2 LINE L2 3236 3266 -6 563 251 120 6 chr11 21259215 21259382 -129524171 + MIR SINE MIR 8 193 -69 1479 207 7 27 chr11 21259642 21259937 -129523616 + AluJb SINE Alu 1 289 -23 677 132 16 36 chr11 21260350 21260599 -129522954 + CT-rich Low_complexity Low_complexity 1 244 0 1589 194 3 0 chr11 21260599 21260882 -129522671 - AluJo SINE Alu -28 284 1 326 333 17 0 chr11 21260900 21261017 -129522536 - L2 LINE L2 -4 3268 3150 324 70 0 0 chr11 21261268 21261311 -129522242 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 2314 109 67 17 chr11 21261595 21261952 -129521601 - THE1C LTR MaLR 0 375 1 11110 110 48 3 chr11 21261952 21263464 -129520089 - THE1C-int LTR MaLR 0 1580 1 2937 83 16 8 chr11 21263464 21263836 -129519717 - THE1C LTR MaLR 0 375 1 24 0 0 0 chr11 21264073 21264097 -129519456 + AT_rich Low_complexity Low_complexity 1 24 0 400 269 69 110 chr11 21264256 21264382 -129519171 + MIR SINE MIR 28 141 -121 2121 133 13 0 chr11 21264382 21264684 -129518869 + AluJb SINE Alu 1 306 -6 400 269 69 110 chr11 21264684 21264802 -129518751 + MIR SINE MIR 141 262 0 2200 122 3 10 chr11 21264997 21265309 -129518244 - AluSx SINE Alu -2 310 1 485 295 68 0 chr11 21266290 21266436 -129517117 + MIR SINE MIR 38 192 -60 276 225 163 0 chr11 21266530 21266610 -129516943 + HAL1 LINE L1 4 96 -2411 968 28 0 0 chr11 21266618 21266725 -129516828 + L1PA8 LINE L1 6063 6169 -3 891 247 127 32 chr11 21266828 21267144 -129516409 - MLT1H LTR MaLR -1 548 203 928 316 55 8 chr11 21267367 21267734 -129515819 + HAL1 LINE L1 163 546 -1961 1460 195 150 77 chr11 21267741 21268300 -129515253 + HAL1 LINE L1 1169 1768 -739 1275 188 171 22 chr11 21268300 21268662 -129514891 + LTR50 LTR ERVL 1 416 -379 305 357 36 0 chr11 21268722 21268806 -129514747 + HAL1 LINE L1 1763 1849 -658 1701 244 97 39 chr11 21268806 21269323 -129514230 + MLT1H LTR MaLR 3 549 0 1146 252 117 41 chr11 21269323 21269838 -129513715 + HAL1 LINE L1 1845 2398 -109 363 179 0 0 chr11 21269882 21269969 -129513584 - AluJ/FRAM SINE Alu 0 314 228 1591 148 115 0 chr11 21270063 21270341 -129513212 + AluJb SINE Alu 1 310 -2 559 350 80 24 chr11 21270508 21270971 -129512582 + L2 LINE L2 2487 2975 -339 408 267 27 13 chr11 21271304 21271447 -129512106 + MLT1L LTR MaLR 369 615 0 949 259 45 0 chr11 21271560 21271807 -129511746 + MIR SINE MIR 5 262 0 299 309 111 32 chr11 21271842 21271968 -129511585 + L2 LINE L2 3177 3312 -1 183 205 0 0 chr11 21272457 21272496 -129511057 + CT-rich Low_complexity Low_complexity 2 40 0 387 183 0 56 chr11 21273082 21273153 -129510400 + AluJb SINE Alu 1 67 -235 1807 122 8 8 chr11 21273154 21273417 -129510136 + MLT2A2 LTR ERVL 50 312 -141 1356 184 0 8 chr11 21273537 21273787 -129509766 + AluJb SINE Alu 65 312 0 614 271 98 21 chr11 21273880 21274116 -129509437 - MIR SINE MIR 0 262 9 246 250 0 19 chr11 21274448 21274500 -129509053 - MIR3 SINE MIR -21 187 137 432 228 0 0 chr11 21274572 21274664 -129508889 - MLT1I LTR MaLR 0 409 318 514 46 0 0 chr11 21274669 21274734 -129508819 - MLT2A2 LTR ERVL 0 453 389 2035 126 84 62 chr11 21274734 21275172 -129508381 + LTR7 LTR ERV1 1 448 -2 16959 99 14 21 chr11 21275175 21278068 -129505485 + HERVH LTR ERV1 2 2995 -4718 992 120 7 0 chr11 21278047 21278197 -129505356 + HERVH LTR ERV1 3140 3290 -4423 * 3079 104 0 7 chr11 21278187 21278627 -129504926 + HERVH LTR ERV1 3492 3928 -3785 422 143 63 0 chr11 21278633 21278696 -129504857 + HERVH LTR ERV1 5753 5819 -1894 2463 95 45 13 chr11 21278696 21279074 -129504479 + HERVH LTR ERV1 7324 7713 0 2052 132 75 55 chr11 21279074 21279513 -129504040 + LTR7 LTR ERV1 1 448 -2 739 178 42 2 chr11 21279515 21279676 -129503877 - MLT2A2 LTR ERVL -54 500 293 2121 111 6 19 chr11 21279771 21280086 -129503467 - MLT2A2 LTR ERVL -142 311 1 619 330 22 9 chr11 21280091 21280318 -129503235 - MLT1I LTR MaLR -95 314 85 258 263 129 14 chr11 21280426 21280578 -129502975 - L1ME4a LINE L1 -2 6119 5935 2011 120 3 7 chr11 21280578 21280886 -129502667 - AluSx SINE Alu -3 309 3 258 263 129 14 chr11 21280886 21280942 -129502611 - L1ME4a LINE L1 -186 5935 5887 2109 64 7 11 chr11 21281123 21281403 -129502150 + AluY SINE Alu 1 279 -32 332 198 0 10 chr11 21281803 21281904 -129501649 + GA-rich Low_complexity Low_complexity 2 101 0 22862 42 8 9 chr11 21282219 21285782 -129497771 + L1PA5 LINE L1 2574 6151 -3 3122 167 2 33 chr11 21286433 21286764 -129496789 - MLT2B1 LTR ERVL 0 520 208 2025 113 3 0 chr11 21286764 21287087 -129496466 - AluSp SINE Alu 0 324 1 3122 167 2 33 chr11 21287087 21287268 -129496285 - MLT2B1 LTR ERVL -312 208 23 597 188 0 10 chr11 21287268 21287364 -129496189 + AluJo SINE Alu 125 219 -93 476 292 30 24 chr11 21288583 21288751 -129494802 + MLT1K LTR MaLR 1 169 -419 1420 209 82 47 chr11 21289272 21289356 -129494197 + MLT1D LTR MaLR 113 193 -312 1853 135 60 0 chr11 21289356 21289637 -129493916 + AluSg SINE Alu 1 298 -12 1420 209 82 47 chr11 21289637 21289916 -129493637 + MLT1D LTR MaLR 193 489 -16 246 253 103 0 chr11 21289961 21290048 -129493505 + MIR SINE MIR 167 262 0 1887 164 19 82 chr11 21290238 21290654 -129492899 - MLT1B LTR MaLR 0 390 1 202 260 87 58 chr11 21290911 21291015 -129492538 + MIR SINE MIR 35 141 -121 873 284 185 9 chr11 21291421 21291847 -129491706 - MLT1J LTR MaLR -2 509 9 2281 94 0 3 chr11 21291917 21292226 -129491327 - AluY SINE Alu -3 308 1 358 263 17 59 chr11 21292416 21292534 -129491019 - MIR SINE MIR -65 197 85 1881 140 0 0 chr11 21293002 21293281 -129490272 + AluJb SINE Alu 1 279 -33 192 97 0 0 chr11 21293281 21293312 -129490241 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 2247 92 3 0 chr11 21293469 21293763 -129489790 + AluSp SINE Alu 1 295 -18 208 265 0 186 chr11 21293806 21294021 -129489532 - MIR SINE MIR -14 248 74 207 0 0 0 chr11 21294063 21294086 -129489467 + (T)n Simple_repeat Simple_repeat 1 23 0 2419 137 19 82 chr11 21294248 21294343 -129489210 - Tigger2 DNA MER2_type 0 2718 2619 1702 163 33 0 chr11 21294343 21294643 -129488910 - AluJb SINE Alu -2 310 1 2419 137 19 82 chr11 21294643 21295023 -129488530 - Tigger2 DNA MER2_type -99 2619 2273 2373 79 0 0 chr11 21295034 21295339 -129488214 - AluSg1 SINE Alu -4 305 1 430 173 136 0 chr11 21295339 21295420 -129488133 + MER8 DNA MER2_type 148 239 0 779 301 101 30 chr11 21295991 21296357 -129487196 + LTR16C LTR ERVL 68 459 -32 375 139 124 93 chr11 21296536 21296665 -129486888 + MLT1K LTR MaLR 448 580 -8 302 310 35 56 chr11 21297528 21297670 -129485883 + L1ME4a LINE L1 5579 5717 -404 887 183 0 33 chr11 21297673 21297853 -129485700 + FRAM SINE Alu 1 166 -10 457 268 128 26 chr11 21297853 21298204 -129485349 + L1ME4a LINE L1 5730 6116 -5 532 258 108 11 chr11 21298400 21298586 -129484967 + MER3 DNA MER1_type 1 204 -5 257 317 118 21 chr11 21298617 21298803 -129484750 - L2 LINE L2 -172 3100 2897 2441 53 0 0 chr11 21298896 21299197 -129484356 + AluY SINE Alu 1 301 -10 230 294 83 89 chr11 21299401 21299581 -129483972 - MIR SINE MIR -34 228 50 23 54 0 0 chr11 21300950 21300987 -129482566 + AT_rich Low_complexity Low_complexity 1 37 0 252 122 0 0 chr11 21301150 21301191 -129482362 + (CA)n Simple_repeat Simple_repeat 2 42 0 319 228 134 31 chr11 21301238 21301365 -129482188 - L1ME4a LINE L1 -187 5934 5795 307 233 103 0 chr11 21301416 21301531 -129482022 - L1ME4a LINE L1 -459 5662 5593 230 326 42 56 chr11 21301566 21301710 -129481843 + MIR3 SINE MIR 67 208 0 347 235 208 95 chr11 21302293 21302407 -129481146 - MIR SINE MIR 0 262 162 2135 93 10 0 chr11 21302407 21302698 -129480855 - AluY SINE Alu -17 294 1 347 235 208 95 chr11 21302698 21302804 -129480749 - MIR SINE MIR -100 162 17 210 71 0 0 chr11 21303645 21303673 -129479880 + (TTC)n Simple_repeat Simple_repeat 2 29 0 219 338 113 0 chr11 21304788 21304921 -129478632 + MIR SINE MIR 109 256 -6 777 22 0 0 chr11 21307183 21307274 -129476279 + (GAA)n Simple_repeat Simple_repeat 2 92 0 646 260 35 0 chr11 21309030 21309199 -129474354 + MER69A DNA AcHobo 3 177 0 262 258 8 61 chr11 21309311 21309443 -129474110 + CT-rich Low_complexity Low_complexity 2 126 0 204 97 0 0 chr11 21309553 21309584 -129473969 + (CA)n Simple_repeat Simple_repeat 1 31 0 601 287 25 6 chr11 21310268 21310425 -129473128 - MIR3 SINE MIR -3 205 46 231 248 177 35 chr11 21313189 21313302 -129470251 - L2 LINE L2 -182 3090 2962 271 233 41 41 chr11 21314557 21314630 -129468923 - L2 LINE L2 0 3313 3241 250 275 75 17 chr11 21314706 21314826 -129468727 - MER5A DNA MER1_type -9 180 54 * 253 256 93 23 chr11 21314741 21314827 -129468726 + MER5A DNA MER1_type 56 147 -42 193 302 364 0 chr11 21314846 21314975 -129468578 + MER5A DNA MER1_type 8 183 -6 313 276 58 52 chr11 21315217 21315406 -129468147 + MIR SINE MIR 6 193 -67 408 67 0 0 chr11 21315760 21315820 -129467733 + (TC)n Simple_repeat Simple_repeat 1 60 0 297 0 0 0 chr11 21315820 21315853 -129467700 + (TG)n Simple_repeat Simple_repeat 2 34 0 26 0 0 0 chr11 21316132 21316158 -129467395 + AT_rich Low_complexity Low_complexity 1 26 0 929 139 85 18 chr11 21317616 21317781 -129465772 + MER20 DNA MER1_type 2 177 -42 2678 111 93 47 chr11 21317782 21318042 -129465511 + LTR26B LTR ERV1 1 292 -239 1818 156 7 0 chr11 21318042 21318343 -129465210 + AluSx SINE Alu 9 311 -1 2678 111 93 47 chr11 21318343 21318532 -129465021 + LTR26B LTR ERV1 292 471 -60 451 195 0 35 chr11 21318806 21318893 -129464660 + LTR26B LTR ERV1 447 530 -1 296 253 11 53 chr11 21319128 21319223 -129464330 - MIR SINE MIR -4 258 168 1665 179 0 7 chr11 21319384 21319681 -129463872 - AluJo SINE Alu -17 295 1 296 186 9 177 chr11 21319824 21319937 -129463616 + MER102a DNA MER1_type 237 330 0 837 221 11 11 chr11 21320006 21320187 -129463366 + MIR SINE MIR 82 262 0 405 198 86 0 chr11 21320315 21320431 -129463122 + MIR SINE MIR 118 243 -19 1071 158 0 6 chr11 21320511 21320688 -129462865 - FRAM SINE Alu -3 173 1 1043 173 11 22 chr11 21320689 21320874 -129462679 - MER20 DNA MER1_type -34 185 3 747 264 68 10 chr11 21321104 21321318 -129462235 + MIR SINE MIR 37 260 -2 2215 100 3 0 chr11 21322218 21322528 -129461025 - AluY SINE Alu 0 311 1 734 222 78 99 chr11 21322612 21322946 -129460607 - MER102a DNA MER1_type 0 330 4 180 200 0 0 chr11 21324559 21324604 -129458949 + CT-rich Low_complexity Low_complexity 2 46 0 233 280 243 9 chr11 21324806 21324913 -129458640 + MIR3 SINE MIR 15 146 -62 * 391 216 62 21 chr11 21324882 21324979 -129458574 + MIR SINE MIR 113 213 -49 1785 137 0 14 chr11 21325516 21325800 -129457753 + AluSx SINE Alu 1 280 -32 315 0 0 0 chr11 21325807 21325842 -129457711 + (CA)n Simple_repeat Simple_repeat 2 36 0 361 190 89 13 chr11 21326543 21326622 -129456931 + MIR3 SINE MIR 119 203 -5 304 221 53 71 chr11 21326628 21326741 -129456812 + MIR3 SINE MIR 77 187 -21 718 242 105 5 chr11 21327140 21327330 -129456223 + MIR SINE MIR 29 237 -25 528 288 204 5 chr11 21327452 21327643 -129455910 - MIR SINE MIR -14 248 20 2005 129 0 19 chr11 21327646 21327964 -129455589 - AluSx SINE Alu 0 312 1 375 279 88 15 chr11 21328087 21328223 -129455330 + MIR3 SINE MIR 38 183 -25 211 254 55 55 chr11 21328609 21328719 -129454834 - L3b LINE CR1 -230 1353 1244 762 130 91 45 chr11 21329173 21329327 -129454226 + MER96 DNA MER1_type? 15 175 0 227 299 85 43 chr11 21329354 21329518 -129454035 + MIR SINE MIR 1 171 -91 1254 258 142 18 chr11 21330154 21330953 -129452600 + L2 LINE L2 2396 3300 -13 194 0 39 0 chr11 21331000 21331026 -129452527 + (TA)n Simple_repeat Simple_repeat 2 28 0 1982 118 7 0 chr11 21331026 21331313 -129452240 - AluSx SINE Alu -23 289 1 451 198 45 152 chr11 21331738 21331981 -129451572 - MIR SINE MIR -33 229 13 2191 112 0 0 chr11 21332120 21332423 -129451130 - AluSq SINE Alu -10 303 1 335 155 0 17 chr11 21332834 21332892 -129450661 + L2 LINE L2 3254 3310 -3 702 287 30 26 chr11 21332893 21333123 -129450430 - MIR SINE MIR -12 250 20 1245 110 4 114 chr11 21335271 21335516 -129448037 - MLT1B LTR MaLR -170 220 3 342 326 141 7 chr11 21335645 21335780 -129447773 + MIR3 SINE MIR 9 161 -47 380 306 141 0 chr11 21335783 21335953 -129447600 - MIR SINE MIR -12 250 57 291 149 21 0 chr11 21336286 21336333 -129447220 - MLT1A1 LTR MaLR 0 374 327 1439 129 4 0 chr11 21336364 21336589 -129446964 - L1MA5 LINE L1 -2 6298 6073 1805 99 62 34 chr11 21336592 21336884 -129446669 - AluSq SINE Alu -13 300 1 496 118 25 0 chr11 21336887 21336979 -129446574 - L1MA5A LINE L1 -189 6108 6021 1522 183 49 23 chr11 21336982 21337288 -129446265 - MLT1A1 LTR MaLR -51 314 1 775 257 54 54 chr11 21340528 21340731 -129442822 - MIR SINE MIR 0 262 57 2063 99 0 10 chr11 21340731 21341034 -129442519 - AluSg SINE Alu -10 300 1 775 257 54 54 chr11 21341034 21341091 -129442462 - MIR SINE MIR -204 58 2 725 316 32 16 chr11 21342000 21342247 -129441306 - MIR SINE MIR 0 262 12 790 100 93 27 chr11 21342386 21342536 -129441017 + L1PA10 LINE L1 6008 6167 -1 1059 168 0 56 chr11 21342578 21342810 -129440743 - MER20 DNA MER1_type 0 219 1 1041 187 0 0 chr11 21344434 21344605 -129438948 + FAM SINE Alu 5 175 0 324 215 66 116 chr11 21344770 21344891 -129438662 + MIR3 SINE MIR 81 168 -40 24 0 0 0 chr11 21348823 21348847 -129434706 + AT_rich Low_complexity Low_complexity 1 24 0 465 317 7 0 chr11 21348935 21349077 -129434476 - MER45A DNA AcHobo 0 178 36 407 324 54 9 chr11 21350368 21350532 -129433021 - MIR3 SINE MIR -27 181 3 2953 146 45 9 chr11 21350930 21351573 -129431980 - L1MA7 LINE L1 -11 6280 5509 403 165 141 12 chr11 21351572 21351657 -129431896 - L1ME3A LINE L1 -38 6132 6037 * 2127 121 0 3 chr11 21351663 21351977 -129431576 - AluSq SINE Alu 0 313 1 2127 100 10 0 chr11 21352500 21352799 -129430754 - AluY SINE Alu -9 302 1 403 321 0 0 chr11 21353931 21354037 -129429516 - MIR SINE MIR -63 145 40 252 77 0 0 chr11 21354076 21354115 -129429438 + (TA)n Simple_repeat Simple_repeat 2 40 0 456 211 28 28 chr11 21354180 21354360 -129429193 + (TA)n Simple_repeat Simple_repeat 1 180 0 813 313 19 8 chr11 21354435 21354691 -129428862 - MIR SINE MIR 0 262 4 182 178 44 0 chr11 21355146 21355191 -129428362 + CT-rich Low_complexity Low_complexity 2 48 0 393 299 92 37 chr11 21355668 21355885 -129427668 - MIR SINE MIR 0 262 34 2665 16 0 0 chr11 21357515 21357818 -129425735 - AluY SINE Alu -8 303 1 325 154 13 13 chr11 21358046 21358124 -129425429 + C-rich Low_complexity Low_complexity 3 80 0 1657 155 7 7 chr11 21358136 21358426 -129425127 - AluSx SINE Alu -22 290 1 2210 111 7 0 chr11 21358479 21358786 -129424767 + AluSx SINE Alu 1 309 -3 506 252 13 45 chr11 21360081 21360236 -129423317 + MER5A DNA MER1_type 1 150 -39 279 0 0 0 chr11 21367154 21367185 -129416368 + (TG)n Simple_repeat Simple_repeat 2 32 0 584 249 17 60 chr11 21367185 21367409 -129416144 - L1MC5 LINE L1 -33 7928 7713 316 297 70 8 chr11 21368107 21368235 -129415318 + MLT1J LTR MaLR 4 139 -372 466 262 47 47 chr11 21368312 21368503 -129415050 + MLT1H LTR MaLR 95 285 -264 532 282 85 38 chr11 21368732 21369033 -129414520 + MLT1J LTR MaLR 133 511 0 588 225 191 0 chr11 21369403 21369576 -129413977 + MIR SINE MIR 46 251 -11 651 222 232 0 chr11 21370193 21370378 -129413175 - MLT1C LTR MaLR 0 505 278 1913 138 3 3 chr11 21370388 21370686 -129412867 - AluSx SINE Alu -12 300 3 2144 147 90 21 chr11 21370688 21371075 -129412478 - MSTC LTR MaLR -14 414 1 901 181 63 19 chr11 21371084 21371289 -129412264 - MLT1C LTR MaLR -220 247 34 1132 254 137 34 chr11 21371767 21372659 -129410894 - L2 LINE L2 0 3313 2334 4083 183 69 22 chr11 21372694 21373665 -129409888 - L1MB8 LINE L1 -16 6162 5144 748 263 35 13 chr11 21373681 21373909 -129409644 - L2 LINE L2 -1007 2307 2075 9274 38 0 4 chr11 21375866 21377651 -129405902 - L1PA4 LINE L1 -90 6065 4288 * 28571 46 5 3 chr11 21377644 21381950 -129401603 + L1PA5 LINE L1 1835 6151 -3 3051 169 2 35 chr11 21382601 21382932 -129400621 - MLT2B1 LTR ERVL 0 520 209 2126 113 3 0 chr11 21382932 21383255 -129400298 - AluSp SINE Alu 0 324 1 3051 169 2 35 chr11 21383255 21383437 -129400116 - MLT2B1 LTR ERVL -311 209 23 632 188 0 10 chr11 21383437 21383533 -129400020 + AluJo SINE Alu 125 219 -93 473 292 30 24 chr11 21384752 21384920 -129398633 + MLT1K LTR MaLR 1 169 -419 1409 209 82 47 chr11 21385441 21385525 -129398028 + MLT1D LTR MaLR 113 193 -312 1942 136 61 0 chr11 21385525 21385805 -129397748 + AluSg SINE Alu 1 297 -13 1409 209 82 47 chr11 21385805 21386084 -129397469 + MLT1D LTR MaLR 193 489 -16 235 253 103 0 chr11 21386129 21386216 -129397337 + MIR SINE MIR 167 262 0 2013 164 19 82 chr11 21386406 21386822 -129396731 - MLT1B LTR MaLR 0 390 1 198 298 77 48 chr11 21387079 21387183 -129396370 + MIR SINE MIR 35 141 -121 870 282 185 9 chr11 21387589 21388015 -129395538 - MLT1J LTR MaLR -2 509 9 2385 87 0 10 chr11 21388085 21388394 -129395159 - AluY SINE Alu -5 306 1 345 263 17 59 chr11 21388584 21388702 -129394851 - MIR SINE MIR -65 197 85 1977 140 0 0 chr11 21389170 21389449 -129394104 + AluJb SINE Alu 1 279 -33 192 97 0 0 chr11 21389449 21389480 -129394073 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 2361 92 3 0 chr11 21389637 21389931 -129393622 + AluSp SINE Alu 1 295 -18 199 295 35 157 chr11 21389974 21390235 -129393318 - MIR SINE MIR -14 248 20 22 0 0 0 chr11 21390235 21390257 -129393296 + AT_rich Low_complexity Low_complexity 1 22 0 180 111 0 0 chr11 21390716 21390743 -129392810 + (AGGTG)n Simple_repeat Simple_repeat 1 27 0 215 292 111 103 chr11 21391665 21392025 -129391528 - L2 LINE L2 -1 3271 2909 2350 95 3 10 chr11 21392888 21393192 -129390361 - AluSp SINE Alu -11 302 1 326 320 16 8 chr11 21394585 21394710 -129388843 - MIR SINE MIR -85 177 52 380 250 116 0 chr11 21394953 21395065 -129388488 - MLT1A1 LTR MaLR -19 530 406 495 281 20 7 chr11 21395220 21395373 -129388180 - MLT1H LTR MaLR -387 162 8 238 288 72 36 chr11 21395687 21395798 -129387755 + L2 LINE L2 2733 2847 -467 253 108 0 77 chr11 21395804 21395869 -129387684 - AluSp/q SINE Alu -1 302 243 357 293 161 51 chr11 21396187 21396542 -129387011 + L2 LINE L2 2816 3209 -104 1152 249 20 64 chr11 21397519 21397865 -129385688 + MER46C DNA MER2_type 1 331 -7 1085 209 35 97 chr11 21398742 21399053 -129384500 - MLT1A1 LTR MaLR -68 297 6 265 289 36 0 chr11 21399378 21399461 -129384092 - L2 LINE L2 -517 2797 2712 355 294 28 0 chr11 21399899 21400008 -129383545 + L2 LINE L2 3197 3308 -5 1009 177 27 5 chr11 21400239 21400425 -129383128 - MLT1D LTR MaLR -315 190 1 3775 200 125 112 chr11 21400427 21401779 -129381774 - MLT1D-int LTR MaLR 0 1371 3 2072 217 36 36 chr11 21401782 21402276 -129381277 - MLT1D LTR MaLR 0 505 12 1221 211 58 12 chr11 21402365 21402707 -129380846 - Charlie5 DNA MER1_type 0 2624 2267 1031 234 36 53 chr11 21402734 21403071 -129380482 - L1ME1 LINE L1 -5 6161 5831 * 1131 231 79 50 chr11 21403066 21403458 -129380095 - L1MEc LINE L1 -4036 2360 1981 1171 128 37 46 chr11 21403458 21403676 -129379877 - L1PA16 LINE L1 -1 6165 5950 1131 231 79 50 chr11 21403676 21404266 -129379287 - L1MEc LINE L1 -4415 1981 1187 928 121 0 35 chr11 21404280 21404421 -129379132 + AluJo SINE Alu 1 136 -176 27 0 0 0 chr11 21404433 21404460 -129379093 + AT_rich Low_complexity Low_complexity 1 27 0 3110 244 96 22 chr11 21404468 21405456 -129378097 - L1MEc LINE L1 -5223 1173 113 711 194 0 0 chr11 21405464 21405593 -129377960 - MER3 DNA MER1_type -87 122 41 529 225 66 53 chr11 21405688 21405839 -129377714 + MIR SINE MIR 96 248 -14 316 258 32 0 chr11 21405999 21406092 -129377461 - MIR SINE MIR -51 211 116 228 286 168 8 chr11 21406112 21406231 -129377322 + MIR SINE MIR 85 222 -40 2353 131 71 13 chr11 21406563 21406944 -129376609 - MER57A LTR ERV1 0 403 1 513 252 94 19 chr11 21406944 21407103 -129376450 - MER57A-int LTR ERV1 0 7537 7367 491 170 113 104 chr11 21407106 21407336 -129376217 - LTR54 LTR ERV1 -271 239 8 294 99 197 14 chr11 21407367 21407438 -129376115 - L1MA3 LINE L1 -2 6303 6220 1890 253 48 52 chr11 21407438 21407754 -129375799 - MER57A-int LTR ERV1 -406 7131 6816 2144 115 7 3 chr11 21407754 21408049 -129375504 - AluSx SINE Alu -16 296 1 1890 253 48 52 chr11 21408049 21408333 -129375220 - MER57A-int LTR ERV1 -721 6816 6533 27 0 0 0 chr11 21408337 21408364 -129375189 + AT_rich Low_complexity Low_complexity 1 27 0 5909 104 11 31 chr11 21408389 21409437 -129374116 - L1PA16 LINE L1 -9 6157 5148 41980 59 11 2 chr11 21409442 21415541 -129368012 - L1PA3 LINE L1 -1 6154 3 1395 207 15 9 chr11 21415541 21415874 -129367679 - L1P LINE L1 -749 5397 5063 1967 145 3 14 chr11 21415874 21416171 -129367382 - MER1B DNA MER1_type 0 339 46 9508 204 17 8 chr11 21416186 21418295 -129365258 - L1 LINE L1 -1075 5787 3660 16125 137 54 36 chr11 21418300 21421255 -129362298 - L1PBa LINE L1 -3854 3008 1 2164 123 0 9 chr11 21421258 21421574 -129361979 - AluSq SINE Alu 0 313 1 1060 153 0 17 chr11 21421582 21421758 -129361795 - AluJb SINE Alu -7 305 133 28 79 0 0 chr11 21421767 21421830 -129361723 + AT_rich Low_complexity Low_complexity 1 63 0 272 288 0 25 chr11 21421830 21421910 -129361643 - L2 LINE L2 -15 3298 3221 2164 64 35 7 chr11 21422029 21422311 -129361242 + AluY SINE Alu 1 290 -21 443 293 24 36 chr11 21422414 21422581 -129360972 - MIR SINE MIR -73 189 25 227 283 160 10 chr11 21423244 21423368 -129360185 + MIR3 SINE MIR 1 143 -65 775 316 60 0 chr11 21423707 21423941 -129359612 + MIR SINE MIR 12 259 -3 300 275 82 0 chr11 21424070 21424205 -129359348 - L1ME LINE L1 -380 5784 5640 238 302 63 24 chr11 21424221 21424347 -129359206 - L3 LINE CR1 -70 1507 1377 197 317 50 40 chr11 21424402 21424503 -129359050 + L2 LINE L2 2870 2971 -342 361 296 20 0 chr11 21424575 21424673 -129358880 - MIR SINE MIR -123 139 40 389 278 17 68 chr11 21424969 21425145 -129358408 - L3 LINE CR1 -613 964 798 232 224 61 0 chr11 21425149 21425198 -129358355 + MIR3 SINE MIR 132 183 -25 954 183 113 0 chr11 21425226 21425412 -129358141 + MER3 DNA MER1_type 1 207 -2 29 60 0 0 chr11 21425513 21425563 -129357990 + AT_rich Low_complexity Low_complexity 1 50 0 374 284 11 0 chr11 21425565 21425653 -129357900 - L2 LINE L2 -20 3252 3164 375 275 148 7 chr11 21425992 21426141 -129357412 - MLT1I LTR MaLR -142 267 98 222 37 0 0 chr11 21426481 21426508 -129357045 + (CA)n Simple_repeat Simple_repeat 2 28 0 2336 88 0 16 chr11 21427258 21427564 -129355989 - AluSg SINE Alu -9 301 1 1907 163 7 74 chr11 21427582 21428000 -129355553 - MLT1B LTR MaLR 0 390 1 319 118 59 0 chr11 21428217 21428268 -129355285 + L1MC4 LINE L1 6650 6703 -1339 * 361 240 0 52 chr11 21428244 21428340 -129355213 - L1MC4 LINE L1 -1339 6703 6613 965 275 53 20 chr11 21428395 21428748 -129354805 - MLT1I LTR MaLR 0 409 63 415 268 16 63 chr11 21428989 21429109 -129354444 + MIR SINE MIR 2 112 -150 2138 139 3 3 chr11 21429109 21429410 -129354143 - AluSx SINE Alu -11 301 1 415 268 16 63 chr11 21429410 21429477 -129354076 + MIR SINE MIR 112 181 -81 549 247 123 0 chr11 21429495 21429657 -129353896 + MIR SINE MIR 78 259 -3 296 235 0 0 chr11 21429667 21429735 -129353818 + MIR SINE MIR 184 251 -11 1719 129 109 34 chr11 21429888 21430237 -129353316 - THE1C LTR MaLR 0 375 1 9318 132 7 61 chr11 21430237 21431904 -129351649 - THE1C-int LTR MaLR 0 1580 4 1297 131 206 38 chr11 21431907 21432227 -129351326 - THE1C LTR MaLR 0 375 2 279 404 18 0 chr11 21432675 21432784 -129350769 - MIR3 SINE MIR -52 156 46 3423 129 27 2 chr11 21432835 21433386 -129350167 - L1PA16 LINE L1 -2 6164 5600 565 243 171 14 chr11 21433391 21433613 -129349940 - L1ME3A LINE L1 -9 6161 5905 7241 47 2 0 chr11 21433685 21434926 -129348627 - L1PA6 LINE L1 -2 6152 4913 5928 207 11 7 chr11 21434926 21436711 -129346842 - L1PA16 LINE L1 -545 5621 3830 252 167 0 0 chr11 21436741 21436789 -129346764 + (TCCA)n Simple_repeat Simple_repeat 3 50 0 198 283 0 0 chr11 21437552 21437598 -129345955 - MIR SINE MIR -63 145 100 191 276 250 32 chr11 21437807 21437963 -129345590 + L3b LINE CR1 1198 1387 -196 568 282 69 25 chr11 21438714 21438916 -129344637 + MIR SINE MIR 49 259 -3 411 287 16 16 chr11 21439932 21440054 -129343499 - L2 LINE L2 -5 3308 3187 * 449 308 0 2 chr11 21440050 21440165 -129343388 + MIR SINE MIR 49 162 -46 395 276 109 35 chr11 21440680 21440854 -129342699 - L2 LINE L2 -1 3312 3126 2210 259 78 102 chr11 21440860 21442338 -129341215 - L2 LINE L2 0 3313 1899 2660 104 5 8 chr11 21442338 21442712 -129340841 - THE1C LTR MaLR -2 373 1 2210 259 78 102 chr11 21442712 21443282 -129340271 - L2 LINE L2 -1414 1899 1317 249 210 12 49 chr11 21443808 21443851 -129339702 + CT-rich Low_complexity Low_complexity 5 45 -37 2202 112 0 0 chr11 21443851 21444138 -129339415 - AluSg SINE Alu -23 287 1 249 210 12 49 chr11 21444138 21444175 -129339378 + CT-rich Low_complexity Low_complexity 45 82 0 283 241 145 42 chr11 21444316 21444557 -129338996 + L1MC4 LINE L1 6796 7061 -981 423 252 34 27 chr11 21444575 21444722 -129338831 + MIR SINE MIR 84 231 -31 258 216 0 63 chr11 21444744 21444855 -129338698 + (TTA)n Simple_repeat Simple_repeat 2 105 0 188 291 47 55 chr11 21445001 21445128 -129338425 + L2 LINE L2 3159 3284 -29 231 252 29 12 chr11 21445684 21445768 -129337785 + MIR SINE MIR 15 102 -106 820 182 118 0 chr11 21446068 21446255 -129337298 - MER3 DNA MER1_type 0 209 1 471 280 76 0 chr11 21447050 21447182 -129336371 - L2 LINE L2 0 3313 3172 374 274 159 0 chr11 21447170 21447283 -129336270 - MIR SINE MIR 0 262 132 * 195 45 0 68 chr11 21447845 21447889 -129335664 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 734 167 0 0 chr11 21447892 21448006 -129335547 - FLAM_A SINE Alu -16 117 4 31093 36 1 2 chr11 21448276 21452279 -129331274 - L1P LINE L1 -987 5159 1164 7379 219 17 37 chr11 21452282 21454492 -129329061 - L1 LINE L1 -1002 5144 2978 578 280 13 36 chr11 21454494 21454719 -129328834 - MER57-int LTR ERV1 -999 6538 6319 1793 208 35 13 chr11 21454737 21455112 -129328441 - MER57A LTR ERV1 -12 391 9 198 331 55 107 chr11 21455561 21455833 -129327720 - L2 LINE L2 -23 3249 2992 190 343 56 28 chr11 21456508 21456616 -129326937 + MIR SINE MIR 86 196 -66 2345 94 18 51 chr11 21456656 21456940 -129326613 - L1PB1 LINE L1 -4 6147 5878 2310 103 0 25 chr11 21456940 21457259 -129326294 + AluSx SINE Alu 1 311 -1 2345 94 18 51 chr11 21457259 21457369 -129326184 - L1PB1 LINE L1 -273 5878 5766 801 98 0 0 chr11 21457369 21457471 -129326082 - AluSg/x SINE Alu -15 294 193 1974 124 17 3 chr11 21457573 21457863 -129325690 - AluSg SINE Alu -16 294 1 2604 96 10 5 chr11 21457864 21458262 -129325291 - L1PB1 LINE L1 -371 5780 5381 198 0 0 0 chr11 21458335 21458357 -129325196 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2253 120 3 0 chr11 21458408 21458708 -129324845 + AluSg SINE Alu 1 301 -9 29392 54 8 4 chr11 21458727 21463023 -129320530 - L1PA5 LINE L1 -5 6149 1827 8913 32 2 4 chr11 21463023 21464889 -129318664 + L1PA4 LINE L1 4294 6155 0 29392 54 8 4 chr11 21464889 21465326 -129318227 - L1PA5 LINE L1 -4327 1827 1393 505 243 236 0 chr11 21466274 21466422 -129317131 - MER5A DNA MER1_type -3 186 4 2771 96 3 0 chr11 21466843 21467206 -129316347 - THE1B LTR MaLR 0 364 1 1970 145 3 3 chr11 21467463 21467752 -129315801 + AluSx SINE Alu 5 293 -19 1375 308 143 24 chr11 21467974 21468783 -129314770 + L2 LINE L2 2007 2912 -402 303 257 22 103 chr11 21468783 21468919 -129314634 - MLT1H LTR MaLR 0 549 425 233 282 28 14 chr11 21469093 21469164 -129314389 - MLT1I LTR MaLR -261 148 77 843 282 70 37 chr11 21469233 21469616 -129313937 + L2 LINE L2 2906 3301 -12 484 291 7 27 chr11 21470158 21470306 -129313247 - MIR3 SINE MIR -48 160 16 484 222 25 30 chr11 21470707 21470862 -129312691 + MIR SINE MIR 10 164 -62 369 0 0 0 chr11 21470956 21470997 -129312556 + (CA)n Simple_repeat Simple_repeat 1 41 0 688 103 43 0 chr11 21471838 21471955 -129311598 - MSTC LTR MaLR 0 428 307 * 816 172 7 7 chr11 21471951 21472102 -129311451 - MSTC LTR MaLR -277 151 1 180 391 0 0 chr11 21472475 21472539 -129311014 - L3b LINE CR1 -225 1358 1295 289 326 48 34 chr11 21472608 21472755 -129310798 + L2 LINE L2 2809 2957 -315 2582 132 9 29 chr11 21472796 21473250 -129310303 - L1PB3 LINE L1 0 6154 5710 708 35 0 0 chr11 21473263 21473350 -129310203 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 516 343 35 0 chr11 21473352 21473495 -129310058 - L2 LINE L2 -9 3263 3116 1668 190 3 7 chr11 21473719 21474019 -129309534 + AluJo SINE Alu 12 310 -2 424 225 58 0 chr11 21474017 21474137 -129309416 - L1ME3 LINE L1 -6 6156 6030 3517 222 83 46 chr11 21474160 21474953 -129308600 - L1ME3 LINE L1 -204 5960 5198 255 29 29 0 chr11 21474953 21474988 -129308565 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1660 172 3 24 chr11 21474988 21475278 -129308275 - AluJo SINE Alu -28 284 1 3517 222 83 46 chr11 21475278 21475414 -129308139 - L1ME3 LINE L1 -966 5198 5069 264 30 0 0 chr11 21475414 21475447 -129308106 + (TG)n Simple_repeat Simple_repeat 2 34 0 3517 222 83 46 chr11 21475447 21475867 -129307686 - L1ME3 LINE L1 -1095 5069 4666 1371 214 16 58 chr11 21475867 21476180 -129307373 - AluJo SINE Alu -12 300 1 3517 222 83 46 chr11 21476180 21476658 -129306895 - L1ME3 LINE L1 -1498 4666 3947 2293 85 3 0 chr11 21476658 21476964 -129306589 + AluSp SINE Alu 1 307 0 3517 222 83 46 chr11 21476964 21477015 -129306538 - L1ME3 LINE L1 -2217 3947 3899 199 305 71 88 chr11 21477522 21477761 -129305792 + L3 LINE CR1 49 283 -1294 1221 312 34 34 chr11 21478012 21478283 -129305270 - MLT1K LTR MaLR -40 548 275 231 36 0 0 chr11 21478283 21478311 -129305242 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1221 312 34 34 chr11 21478311 21478575 -129304978 - MLT1K LTR MaLR -312 276 13 591 367 65 11 chr11 21478616 21478894 -129304659 + L3 LINE CR1 412 704 -873 527 288 42 119 chr11 21479720 21479936 -129303617 + L3 LINE CR1 707 938 -639 2338 110 7 0 chr11 21479936 21480246 -129303307 - AluSx SINE Alu 0 312 1 527 288 42 119 chr11 21480246 21480271 -129303282 + L3 LINE CR1 938 963 -614 2484 43 40 0 chr11 21480271 21480570 -129302983 - AluY SINE Alu 0 311 1 527 288 42 119 chr11 21480570 21480688 -129302865 + L3 LINE CR1 963 1039 -538 678 211 60 70 chr11 21480698 21480725 -129302828 - MER20 DNA MER1_type -22 197 171 2076 95 0 71 chr11 21480725 21481051 -129302502 - AluY SINE Alu -8 303 1 678 211 60 70 chr11 21481051 21481222 -129302331 - MER20 DNA MER1_type -48 171 1 476 249 59 35 chr11 21481226 21481395 -129302158 + L3 LINE CR1 1056 1228 -349 235 341 0 11 chr11 21481439 21481527 -129302026 + CT-rich Low_complexity Low_complexity 4 90 0 500 161 63 7 chr11 21481558 21481686 -129301867 - L1MB4 LINE L1 -16 6168 6032 1438 204 107 18 chr11 21482233 21482571 -129300982 - MLT1A2 LTR MaLR 0 374 7 374 345 35 11 chr11 21482865 21483039 -129300514 + L3 LINE CR1 1369 1546 -31 1036 194 75 0 chr11 21483040 21483241 -129300312 - MER20 DNA MER1_type -3 216 1 290 247 65 0 chr11 21483394 21483471 -129300082 - MIR SINE MIR -83 179 98 208 344 0 0 chr11 21487895 21487959 -129295594 - MIR SINE MIR -115 93 30 506 217 127 68 chr11 21488285 21488506 -129295047 - MER102b DNA MER1_type -3 338 105 340 141 127 0 chr11 21488540 21488611 -129294942 - L1MB2 LINE L1 -84 6087 6008 375 227 45 18 chr11 21488681 21488791 -129294762 + MER104 DNA Tc2 68 180 0 382 311 28 57 chr11 21488925 21489102 -129294451 - MER5B DNA MER1_type -5 173 2 1722 174 13 13 chr11 21489270 21489569 -129293984 + AluJo SINE Alu 1 299 -13 308 284 88 31 chr11 21489920 21490114 -129293439 - L2 LINE L2 -238 3034 2830 893 172 18 12 chr11 21490198 21490367 -129293186 - L1MB2 LINE L1 -2 6169 6000 819 157 0 11 chr11 21490521 21490885 -129292668 + C-rich Low_complexity Low_complexity 1 360 0 630 171 0 29 chr11 21491028 21491198 -129292355 + C-rich Low_complexity Low_complexity 3 167 0 488 199 11 39 chr11 21491208 21491389 -129292164 + CT-rich Low_complexity Low_complexity 3 178 0 675 220 8 30 chr11 21491398 21491530 -129292023 - FLAM_A SINE Alu -4 129 1 209 216 0 0 chr11 21491695 21491732 -129291821 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 325 299 163 14 chr11 21492135 21492429 -129291124 - L1ME4a LINE L1 -38 6083 5746 280 291 182 9 chr11 21493031 21493141 -129290412 - L2 LINE L2 -1 3271 3143 2025 119 9 38 chr11 21493155 21493474 -129290079 + AluSq SINE Alu 1 310 -3 556 225 31 8 chr11 21493842 21493971 -129289582 + MIR SINE MIR 44 175 -87 247 189 0 19 chr11 21493986 21494039 -129289514 - L2 LINE L2 0 3313 3262 515 290 86 27 chr11 21494107 21494328 -129289225 + MIR SINE MIR 4 237 -25 381 326 163 31 chr11 21495078 21495366 -129288187 + L2 LINE L2 2942 3267 -5 225 0 0 0 chr11 21495497 21495522 -129288031 + (T)n Simple_repeat Simple_repeat 1 25 0 497 343 17 11 chr11 21496788 21496966 -129286587 - MIR3 SINE MIR -13 195 17 1316 288 133 42 chr11 21497440 21498479 -129285074 - L2 LINE L2 0 3313 2168 210 143 0 0 chr11 21498739 21498750 -129284803 + (TAA)n Simple_repeat Simple_repeat 1 11 -31 1847 125 7 46 chr11 21498750 21499053 -129284500 + AluJb SINE Alu 5 295 -17 210 143 0 0 chr11 21499053 21499083 -129284470 + (TAA)n Simple_repeat Simple_repeat 10 42 0 465 186 52 0 chr11 21499438 21499535 -129284018 - MIR3 SINE MIR -3 205 104 205 215 19 28 chr11 21500562 21500669 -129282884 + CT-rich Low_complexity Low_complexity 2 107 0 198 340 0 0 chr11 21501750 21501803 -129281750 - L2 LINE L2 -15 3257 3205 293 255 46 85 chr11 21502035 21502188 -129281365 - L2 LINE L2 -260 3012 2866 348 324 138 7 chr11 21502635 21502780 -129280773 + MIR SINE MIR 20 183 -79 2261 109 3 0 chr11 21503071 21503374 -129280179 + AluSq SINE Alu 1 304 -9 808 128 0 0 chr11 21503379 21503488 -129280065 - MER50-int LTR ERV1 -7096 109 1 1053 148 42 51 chr11 21503573 21503729 -129279824 - MER50 LTR ERV1 -23 711 556 2512 65 0 3 chr11 21503729 21504035 -129279518 + AluY SINE Alu 1 305 -6 1053 148 42 51 chr11 21504035 21504094 -129279459 - MER50 LTR ERV1 -178 556 498 5951 192 29 48 chr11 21504747 21506078 -129277475 - L1MB8 LINE L1 -60 6118 4864 7922 191 35 86 chr11 21506078 21507926 -129275627 - MER52A LTR ERV1 0 1755 1 5951 192 29 48 chr11 21507926 21509112 -129274441 - L1MB8 LINE L1 -1314 4864 3657 297 319 22 22 chr11 21509526 21509711 -129273842 - L1M4 LINE L1 -2157 3989 3805 792 320 97 35 chr11 21510204 21511079 -129272474 - L1M4 LINE L1 -2692 3454 2526 262 233 41 0 chr11 21511189 21511262 -129272291 - MLT1J2 LTR MaLR -371 79 4 189 184 0 0 chr11 21511366 21511404 -129272149 + L2 LINE L2 3271 3308 -5 210 290 0 32 chr11 21511602 21511664 -129271889 + MIR SINE MIR 189 248 -14 201 154 0 0 chr11 21511670 21511709 -129271844 + (ATG)n Simple_repeat Simple_repeat 1 39 0 349 319 12 30 chr11 21512864 21513030 -129270523 + MIR SINE MIR 30 192 -70 458 299 84 86 chr11 21513929 21514285 -129269268 - L2 LINE L2 -340 2974 2618 2580 49 0 7 chr11 21514285 21514591 -129268962 + AluY SINE Alu 1 304 -7 458 299 84 86 chr11 21514591 21514783 -129268770 - L2 LINE L2 -696 2618 2427 378 279 87 0 chr11 21515726 21515830 -129267723 + MIR SINE MIR 30 142 -66 453 310 139 67 chr11 21515835 21516280 -129267273 - L2 LINE L2 -1 3312 2836 339 25 0 0 chr11 21516652 21516692 -129266861 + (TATG)n Simple_repeat Simple_repeat 2 41 0 5352 140 18 27 chr11 21516696 21517658 -129265895 - L1PA16 LINE L1 -14 6152 5200 353 246 43 68 chr11 21517977 21518254 -129265299 + Charlie8 DNA MER1_type 75 427 -1990 202 261 0 0 chr11 21518331 21518377 -129265176 - MIR SINE MIR -167 95 50 19793 150 36 20 chr11 21518397 21520691 -129262862 - L1 LINE L1 -807 6758 4502 3632 69 14 2 chr11 21520691 21521128 -129262425 + MLT2A1 LTR ERVL 3 444 0 19793 150 36 20 chr11 21521128 21521258 -129262295 - L1 LINE L1 -3063 4502 4376 2020 124 0 0 chr11 21521258 21521525 -129262028 - AluSx SINE Alu -25 287 21 19793 150 36 20 chr11 21521525 21522521 -129261032 - L1 LINE L1 -3189 4376 3398 2049 103 59 7 chr11 21522521 21522811 -129260742 - AluY SINE Alu -6 305 1 19793 150 36 20 chr11 21522811 21523262 -129260291 - L1 LINE L1 -4167 3398 2956 339 44 0 0 chr11 21523262 21523307 -129260246 + (TG)n Simple_repeat Simple_repeat 2 46 0 19793 150 36 20 chr11 21523307 21523735 -129259818 - L1 LINE L1 -4609 2956 2536 207 0 0 0 chr11 21523735 21523758 -129259795 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 19793 150 36 20 chr11 21523758 21526102 -129257451 - L1 LINE L1 -5029 2536 10 8122 155 44 41 chr11 21526255 21527233 -129256320 - L1MA6 LINE L1 -12 6288 5314 4424 108 10 3 chr11 21527233 21527853 -129255700 - L1PB1 LINE L1 -2 6149 5526 8122 155 44 41 chr11 21527853 21529558 -129253995 - L1MA6 LINE L1 -986 5314 3561 2628 29 7 3 chr11 21529733 21530043 -129253510 + AluY SINE Alu 1 311 0 40 49 0 0 chr11 21530929 21530990 -129252563 + AT_rich Low_complexity Low_complexity 1 61 0 2441 77 3 0 chr11 21530990 21531300 -129252253 - AluY SINE Alu 0 311 1 12129 204 28 15 chr11 21531305 21532066 -129251487 - L1PA16 LINE L1 -9 6157 5408 183 42 0 0 chr11 21532066 21532090 -129251463 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2009 97 0 70 chr11 21532090 21532389 -129251164 - AluSx SINE Alu -31 281 4 12129 204 28 15 chr11 21532389 21535421 -129248132 - L1PA16 LINE L1 -757 5409 2315 344 275 0 0 chr11 21535444 21535524 -129248029 - MIR SINE MIR -130 132 53 288 273 101 0 chr11 21535779 21535878 -129247675 - MER103 DNA DNA 0 166 58 646 296 56 5 chr11 21535878 21536094 -129247459 - MIR SINE MIR -34 228 2 232 298 0 0 chr11 21537354 21537401 -129246152 - L2 LINE L2 -21 3292 3246 975 302 69 35 chr11 21537469 21538045 -129245508 + L2 LINE L2 2702 3299 -14 404 254 9 27 chr11 21538063 21538173 -129245380 - L2 LINE L2 -189 3083 2976 194 297 40 14 chr11 21539682 21539756 -129243797 - L2 LINE L2 -252 3020 2945 2093 136 24 53 chr11 21540077 21540452 -129243101 - THE1B LTR MaLR 0 364 1 238 331 24 60 chr11 21540563 21540729 -129242824 - MER5B DNA MER1_type -16 162 3 284 287 37 19 chr11 21540878 21540986 -129242567 - MLT1J LTR MaLR -3 508 399 2474 137 11 21 chr11 21540986 21541365 -129242188 + THE1C LTR MaLR 1 375 0 5391 123 35 43 chr11 21541365 21542861 -129240692 + THE1C-int LTR MaLR 1 1580 0 2567 114 44 6 chr11 21542861 21543222 -129240331 + THE1C LTR MaLR 1 375 0 761 270 56 0 chr11 21543372 21543550 -129240003 - MLT1J LTR MaLR -320 191 4 772 274 58 80 chr11 21544422 21544783 -129238770 - MLT1J2 LTR MaLR -72 378 26 501 271 166 18 chr11 21545030 21545259 -129238294 + MIR SINE MIR 3 262 0 2152 221 37 39 chr11 21546082 21546227 -129237326 - L1MC4a LINE L1 0 7808 7664 2244 116 0 3 chr11 21546227 21546529 -129237024 - AluSg SINE Alu -9 301 1 2152 221 37 39 chr11 21546529 21546972 -129236581 - L1MC4a LINE L1 -144 7664 7221 1996 118 50 0 chr11 21546995 21547274 -129236279 + AluSc SINE Alu 1 293 -16 32 0 0 0 chr11 21547471 21547503 -129236050 + AT_rich Low_complexity Low_complexity 1 32 0 206 156 22 0 chr11 21547547 21547592 -129235961 + G-rich Low_complexity Low_complexity 5 50 0 290 306 108 29 chr11 21547832 21548135 -129235418 - L2 LINE L2 -191 3081 2768 893 172 18 12 chr11 21548144 21548313 -129235240 - L1MB2 LINE L1 -2 6169 6000 2145 129 0 3 chr11 21549079 21549382 -129234171 - AluSx SINE Alu -10 302 1 681 111 0 0 chr11 21549446 21549545 -129234008 - LTR12 LTR ERV1 0 714 616 318 236 11 0 chr11 21549549 21549638 -129233915 - LTR30 LTR ERV1 -80 642 553 1546 73 0 150 chr11 21549639 21549913 -129233640 - LTR12 LTR ERV1 -429 285 53 265 231 0 0 chr11 21549913 21549965 -129233588 - LTR30 LTR ERV1 -670 52 1 279 54 0 0 chr11 21550058 21550095 -129233458 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 759 227 153 61 chr11 21550095 21550294 -129233259 - L2 LINE L2 -13 3300 3064 195 42 0 0 chr11 21550294 21550318 -129233235 + (GA)n Simple_repeat Simple_repeat 1 24 0 759 227 153 61 chr11 21550318 21550413 -129233140 - L2 LINE L2 -249 3064 2979 626 254 114 40 chr11 21550425 21550653 -129232900 - MIR SINE MIR 0 262 18 2513 183 51 26 chr11 21550806 21551297 -129232256 + MLT1D LTR MaLR 1 503 -2 186 208 0 0 chr11 21551415 21551463 -129232090 + G-rich Low_complexity Low_complexity 4 51 0 191 228 148 10 chr11 21551613 21551714 -129231839 - L2 LINE L2 -1226 2088 1974 202 284 198 12 chr11 21551854 21551935 -129231618 + L2 LINE L2 3177 3272 0 373 311 34 7 chr11 21554706 21554854 -129228699 + MIR SINE MIR 65 216 -46 279 0 0 0 chr11 21554951 21554982 -129228571 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 329 299 8 17 chr11 21555003 21555120 -129228433 - MIR SINE MIR -124 138 23 369 274 268 0 chr11 21555144 21555308 -129228245 + MIR SINE MIR 29 236 -26 714 275 34 50 chr11 21555634 21555828 -129227725 - MIR SINE MIR -3 259 69 2213 121 0 7 chr11 21555828 21556135 -129227418 - AluSx SINE Alu -7 305 1 714 275 34 50 chr11 21556135 21556202 -129227351 - MIR SINE MIR -193 69 2 278 270 0 27 chr11 21556302 21556376 -129227177 + CT-rich Low_complexity Low_complexity 1 72 0 302 294 137 71 chr11 21556438 21556775 -129226778 + L1M2 LINE L1 897 1255 -5594 1511 126 18 5 chr11 21556916 21557138 -129226415 - AluSx SINE Alu -87 225 1 1133 159 65 0 chr11 21557285 21557486 -129226067 - MSTB2 LTR MaLR -243 214 1 394 223 32 0 chr11 21557734 21557828 -129225725 + MER5A DNA MER1_type 9 105 -84 536 276 41 21 chr11 21558905 21559050 -129224503 + L2 LINE L2 3125 3272 0 197 293 52 0 chr11 21559226 21559284 -129224269 - MIR SINE MIR 0 262 202 438 314 41 6 chr11 21559618 21559790 -129223763 + MIR SINE MIR 77 254 -8 189 0 0 0 chr11 21559792 21559813 -129223740 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1108 309 89 48 chr11 21559975 21560990 -129222563 - L2 LINE L2 0 3272 2227 1722 83 9 4 chr11 21561004 21561233 -129222320 + AluY SINE Alu 82 311 0 11036 181 66 49 chr11 21562173 21564151 -129219402 + L1MC3 LINE L1 4888 6939 -846 186 43 0 0 chr11 21564151 21564174 -129219379 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 11036 181 66 49 chr11 21564174 21565037 -129218516 + L1MC3 LINE L1 6939 7785 0 327 316 67 26 chr11 21566059 21566252 -129217301 - MIR SINE MIR -34 228 28 1447 224 171 36 chr11 21566823 21567346 -129216207 - MLT1G LTR MaLR 0 590 34 513 300 61 72 chr11 21567568 21567940 -129215613 - MLT1J2 LTR MaLR -37 413 28 243 362 19 29 chr11 21568323 21568428 -129215125 - MIR SINE MIR -71 137 34 2061 109 17 7 chr11 21568597 21568890 -129214663 + AluSx SINE Alu 1 296 -16 765 278 46 5 chr11 21569101 21569317 -129214236 + MIR SINE MIR 33 257 -5 343 186 54 0 chr11 21570064 21570193 -129213360 + (TA)n Simple_repeat Simple_repeat 1 136 0 22 0 0 0 chr11 21570235 21570257 -129213296 + AT_rich Low_complexity Low_complexity 1 22 0 464 316 238 3 chr11 21570451 21570733 -129212820 + L3 LINE CR1 820 1167 -410 214 290 116 0 chr11 21570798 21570867 -129212686 + L3 LINE CR1 1190 1266 -311 310 233 220 53 chr11 21571223 21571373 -129212180 - MER5A DNA MER1_type -1 188 14 333 264 194 7 chr11 21572097 21572241 -129211312 + MIR SINE MIR 80 250 -12 478 321 0 25 chr11 21576313 21576475 -129207078 + MER5B DNA MER1_type 4 161 -17 480 277 169 15 chr11 21576918 21577113 -129206440 - MIR SINE MIR -32 230 6 247 261 178 38 chr11 21577303 21577460 -129206093 - MIR SINE MIR -11 251 73 21 0 0 0 chr11 21579262 21579283 -129204270 + AT_rich Low_complexity Low_complexity 1 21 0 9255 154 24 23 chr11 21580119 21580440 -129203113 - L1M1 LINE L1 -4369 3196 2877 339 44 0 0 chr11 21580440 21580485 -129203068 + (TG)n Simple_repeat Simple_repeat 2 46 0 9255 154 24 23 chr11 21580485 21581911 -129201642 - L1M1 LINE L1 -4688 2877 1448 370 233 9 60 chr11 21582725 21582841 -129200712 + MIR3 SINE MIR 84 193 -15 198 0 0 0 chr11 21584671 21584693 -129198860 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1958 149 313 23 chr11 21585718 21586194 -129197359 + LTR18B LTR ERVL 1 614 0 1618 191 14 0 chr11 21586200 21586488 -129197065 + HERVL18 LTR ERVL 1 292 -5755 5355 178 9 6 chr11 21586510 21587366 -129196187 + HERVL18 LTR ERVL 2718 3576 -2471 4610 135 8 8 chr11 21587371 21588039 -129195514 + HERVL18 LTR ERVL 4394 5061 -986 182 338 28 14 chr11 21588764 21588835 -129194718 + L2 LINE L2 2764 2835 -479 294 250 177 57 chr11 21589064 21589188 -129194365 + L2 LINE L2 3134 3272 0 207 200 59 82 chr11 21589275 21589360 -129194193 + MIR SINE MIR 110 192 -70 611 271 101 10 chr11 21590550 21590757 -129192796 + MIR SINE MIR 1 226 -36 1646 159 16 32 chr11 21590991 21591299 -129192254 - L1MC1 LINE L1 -17 6316 6014 10035 45 11 115 chr11 21591307 21592840 -129190713 - SVA Other Other 0 1386 13 1256 177 23 8 chr11 21592888 21593153 -129190400 - L1MA8 LINE L1 -17 6274 6006 639 280 95 4 chr11 21594148 21594391 -129189162 + LTR33 LTR ERVL 10 274 -247 332 367 8 0 chr11 21594607 21594735 -129188818 + MIR SINE MIR 37 165 -97 362 253 13 0 chr11 21595578 21595657 -129187896 + L2 LINE L2 3234 3313 0 394 248 190 0 chr11 21595960 21596097 -129187456 + MIR SINE MIR 100 262 0 296 280 112 16 chr11 21596186 21596311 -129187242 + MIR3 SINE MIR 42 178 -30 372 287 80 93 chr11 21596722 21596959 -129186594 - MIR SINE MIR -10 252 19 1688 141 33 10 chr11 21596961 21597266 -129186287 + L1MB4 LINE L1 5869 6180 0 281 97 10 194 chr11 21597274 21597377 -129186176 + L1MB8 LINE L1 6094 6177 -1 269 281 72 44 chr11 21597389 21597638 -129185915 + HAL1b LINE L1 231 486 -862 199 359 0 0 chr11 21598296 21598360 -129185193 - L2 LINE L2 -21 3251 3188 270 227 45 0 chr11 21598563 21598629 -129184924 - MLT1K LTR MaLR 0 588 520 220 343 50 36 chr11 21598845 21598985 -129184568 - MIR SINE MIR -109 153 12 480 278 83 7 chr11 21599893 21600037 -129183516 - LTR33 LTR ERVL -363 158 4 21 36 0 0 chr11 21600116 21600144 -129183409 + AT_rich Low_complexity Low_complexity 1 28 0 273 119 15 30 chr11 21600150 21600217 -129183336 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 435 65 0 0 chr11 21600528 21600590 -129182963 + Alu SINE Alu 246 307 -4 1782 158 0 24 chr11 21600716 21601014 -129182539 - AluJb SINE Alu -10 302 12 378 0 0 0 chr11 21601217 21601259 -129182294 + (TG)n Simple_repeat Simple_repeat 2 43 0 243 222 0 0 chr11 21601503 21601548 -129182005 + L3 LINE CR1 1521 1565 -12 375 270 74 34 chr11 21602119 21602267 -129181286 - MIR SINE MIR -89 173 20 1884 152 10 3 chr11 21602313 21602610 -129180943 - AluJo SINE Alu -13 299 1 2310 96 0 0 chr11 21602621 21602913 -129180640 - AluSq SINE Alu -21 292 1 271 295 156 8 chr11 21602977 21603099 -129180454 + MIR SINE MIR 47 186 -76 1360 301 84 38 chr11 21603197 21603968 -129179585 - L3 LINE CR1 -98 1479 673 592 200 0 0 chr11 21603968 21604053 -129179500 + FLAM_A SINE Alu 1 85 -57 524 100 0 0 chr11 21604061 21604131 -129179422 + L1MA2 LINE L1 6231 6300 -4 2187 68 11 4 chr11 21605030 21605341 -129178212 + AluY SINE Alu 2 314 0 2489 60 3 0 chr11 21606624 21606924 -129176629 + AluY SINE Alu 1 301 -10 250 354 63 8 chr11 21607353 21607480 -129176073 - L2 LINE L2 -1 3312 3179 539 337 47 5 chr11 21608930 21609123 -129174430 - MIR SINE MIR -61 201 1 722 252 103 93 chr11 21609240 21609637 -129173916 - MLT1J2 LTR MaLR -46 404 4 526 281 190 14 chr11 21609940 21610161 -129173392 + MIR SINE MIR 2 261 -1 242 303 82 109 chr11 21610166 21610470 -129173083 + L2 LINE L2 2976 3271 -1 1856 216 41 52 chr11 21610966 21611527 -129172026 - L1MC4 LINE L1 -2 8040 7486 213 175 0 0 chr11 21611924 21611964 -129171589 - L2 LINE L2 0 3313 3274 349 312 9 9 chr11 21613317 21613426 -129170127 + L2 LINE L2 3203 3311 -2 307 331 13 43 chr11 21613550 21613728 -129169825 + MIR3 SINE MIR 6 181 -65 446 229 185 19 chr11 21614195 21614352 -129169201 - MIR SINE MIR -1 261 79 1693 138 16 0 chr11 21614547 21614801 -129168752 + L1PA16 LINE L1 5889 6146 -20 21 36 0 0 chr11 21614854 21614882 -129168671 + AT_rich Low_complexity Low_complexity 1 28 0 587 287 32 11 chr11 21614925 21615113 -129168440 + L1MEd LINE L1 4 195 -5924 22 0 0 0 chr11 21615132 21615154 -129168399 + AT_rich Low_complexity Low_complexity 1 22 0 1777 56 82 17 chr11 21615163 21615396 -129168157 + L1PA6 LINE L1 5907 6154 0 2779 207 43 25 chr11 21615399 21616031 -129167522 - L1ME1 LINE L1 -10 6156 5514 440 261 115 100 chr11 21616157 21616819 -129166734 + L1MEd LINE L1 415 1086 -5033 28 29 0 0 chr11 21616971 21617006 -129166547 + AT_rich Low_complexity Low_complexity 1 35 0 670 266 96 65 chr11 21617208 21617667 -129165886 - MLT1H LTR MaLR -37 512 40 504 300 37 31 chr11 21617700 21618063 -129165490 + L1MEd LINE L1 1281 1621 -869 28 61 0 0 chr11 21618142 21618191 -129165362 + AT_rich Low_complexity Low_complexity 1 49 0 1084 138 0 0 chr11 21618198 21618357 -129165196 + L1P3 LINE L1 79 237 -5638 11751 181 7 31 chr11 21618362 21620892 -129162661 + L1P3 LINE L1 794 3281 -3180 5109 82 10 44 chr11 21620891 21621197 -129162356 + L1PA8A LINE L1 5403 5718 -413 * 2361 100 0 0 chr11 21621197 21621496 -129162057 + AluSg SINE Alu 1 299 -11 5109 82 10 44 chr11 21621496 21621916 -129161637 + L1PA8A LINE L1 5718 6104 -27 53 0 0 0 chr11 21621918 21621971 -129161582 + AT_rich Low_complexity Low_complexity 1 53 0 1230 312 40 21 chr11 21622581 21623377 -129160176 + L1ME LINE L1 4893 5701 -469 1471 115 0 102 chr11 21623528 21623688 -129159865 - L1MA4A LINE L1 -262 6041 5925 2337 76 0 10 chr11 21623688 21623989 -129159564 - AluSg1 SINE Alu -11 298 1 1471 115 0 102 chr11 21623989 21624132 -129159421 - L1MA4A LINE L1 -378 5925 5769 4423 104 23 2 chr11 21624179 21624797 -129158756 - L1PB2 LINE L1 -7 6144 5514 * 10669 32 0 2 chr11 21624796 21626764 -129156789 + L1PA4 LINE L1 4191 6152 -3 1122 87 17 12 chr11 21624797 21626929 -129156624 - L1P5 LINE L1 -623 5528 5360 484 93 39 9 chr11 21626917 21627010 -129156543 - L1MA4A LINE L1 -494 5797 5706 * 313 235 52 26 chr11 21627051 21627166 -129156387 + L1ME3A LINE L1 6045 6162 -8 1880 288 85 49 chr11 21627202 21628139 -129155414 + L1ME LINE L1 2509 3411 -2735 1923 251 61 15 chr11 21628139 21628662 -129154891 - MLT1H LTR MaLR 0 549 3 1880 288 85 49 chr11 21628662 21629971 -129153582 + L1ME LINE L1 3411 4835 -1311 22 35 0 0 chr11 21630074 21630103 -129153450 + AT_rich Low_complexity Low_complexity 1 29 0 413 248 34 63 chr11 21630166 21630372 -129153181 + L1ME LINE L1 4963 5162 -984 639 300 43 35 chr11 21630469 21630955 -129152598 + L1ME LINE L1 5307 5783 -379 252 200 0 0 chr11 21631325 21631380 -129152173 + (TA)n Simple_repeat Simple_repeat 1 55 0 243 382 45 45 chr11 21631543 21631721 -129151832 - MER5A DNA MER1_type -3 186 9 328 212 0 0 chr11 21631844 21631910 -129151643 - MER5A DNA MER1_type -1 188 123 486 288 46 50 chr11 21631910 21632212 -129151341 + L1MB4 LINE L1 5 305 -6237 580 177 15 31 chr11 21632279 21632409 -129151144 + L1PA8 LINE L1 6045 6172 0 974 149 5 11 chr11 21632431 21632619 -129150934 + L1MA4 LINE L1 6110 6296 -4 3061 230 43 32 chr11 21632734 21633000 -129150553 + L1MB4 LINE L1 612 874 -5772 1642 204 3 37 chr11 21633000 21633323 -129150230 - AluJo SINE Alu 0 312 1 3061 230 43 32 chr11 21633323 21634326 -129149227 + L1MB4 LINE L1 874 1849 -4797 3318 226 23 23 chr11 21634331 21635262 -129148291 + L1MB4 LINE L1 3804 4734 -1910 * 3542 178 47 73 chr11 21635259 21635850 -129147703 + L1MB4 LINE L1 5448 6001 -677 5873 107 13 6 chr11 21635850 21636876 -129146677 + L1PA8A LINE L1 5098 6130 -1 3542 178 47 73 chr11 21636876 21637509 -129146044 + L1MB4 LINE L1 6001 6649 -29 563 252 24 0 chr11 21637521 21637644 -129145909 - MER5A DNA MER1_type -52 137 12 336 271 20 86 chr11 21637842 21637993 -129145560 + L2 LINE L2 2811 2951 -363 239 125 0 0 chr11 21638029 21638069 -129145484 - L1PA10 LINE L1 -7 6161 6122 1273 246 101 37 chr11 21638114 21638630 -129144923 - MLT1H LTR MaLR 0 549 1 550 241 8 0 chr11 21638692 21638825 -129144728 + MER45A DNA AcHobo 1 134 -44 265 271 171 16 chr11 21638861 21638990 -129144563 + L2 LINE L2 3165 3313 0 572 289 60 39 chr11 21639440 21639672 -129143881 - MIR SINE MIR -6 256 20 236 150 0 0 chr11 21639668 21639708 -129143845 - L2 LINE L2 -2 3311 3272 * 3112 132 62 11 chr11 21642341 21642902 -129140651 - MER4B LTR ERV1 -20 590 1 572 255 33 38 chr11 21643476 21643660 -129139893 + MER5A DNA MER1_type 7 189 0 35 0 0 0 chr11 21643884 21643919 -129139634 + AT_rich Low_complexity Low_complexity 1 35 0 260 233 41 14 chr11 21644811 21644884 -129138669 - MER81 DNA DNA -2 112 38 180 0 0 0 chr11 21644923 21644943 -129138610 + (TTA)n Simple_repeat Simple_repeat 2 21 0 498 273 55 38 chr11 21645002 21645185 -129138368 - MIR3 SINE MIR -3 205 20 2271 128 16 25 chr11 21646623 21646990 -129136563 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 21647061 21647082 -129136471 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr11 21647369 21647425 -129136128 + AT_rich Low_complexity Low_complexity 1 56 0 447 333 43 0 chr11 21648080 21648218 -129135335 - L2 LINE L2 -2 3270 3127 547 249 19 56 chr11 21649221 21649434 -129134119 - MER58C DNA MER1_type -6 209 5 502 290 70 20 chr11 21649469 21649669 -129133884 - MIR SINE MIR -21 241 32 477 336 64 70 chr11 21650170 21650640 -129132913 - L1MEd LINE L1 -5649 470 4 367 324 16 44 chr11 21650880 21651062 -129132491 + MIR SINE MIR 5 181 -81 724 213 103 55 chr11 21653050 21653323 -129130230 - MER2 DNA MER2_type -22 323 38 1660 159 23 36 chr11 21653468 21653769 -129129784 - AluSq SINE Alu -16 297 1 545 306 190 21 chr11 21654397 21654786 -129128767 + L3 LINE CR1 1051 1505 -72 240 236 167 35 chr11 21656811 21656955 -129126598 - MIR SINE MIR -9 253 91 646 298 62 13 chr11 21657147 21657372 -129126181 - MIR SINE MIR -12 250 15 2448 85 7 0 chr11 21657873 21658179 -129125374 + AluSx SINE Alu 1 308 -4 766 276 80 32 chr11 21658329 21658857 -129124696 - L1ME4a LINE L1 -1 6120 5568 572 165 66 0 chr11 21659634 21659755 -129123798 + L1MA8 LINE L1 6159 6287 -4 21 0 0 0 chr11 21659755 21659776 -129123777 + AT_rich Low_complexity Low_complexity 1 21 0 344 224 0 56 chr11 21659790 21659897 -129123656 - L1M4 LINE L1 -3903 2243 2143 265 299 19 28 chr11 21660341 21660448 -129123105 + MER5A DNA MER1_type 32 137 -52 857 219 66 31 chr11 21660739 21660967 -129122586 - MIR SINE MIR -11 251 16 225 378 0 0 chr11 21661124 21661222 -129122331 - L2 LINE L2 -240 3032 2935 207 297 93 8 chr11 21661634 21661752 -129121801 - L2 LINE L2 -862 2452 2325 372 319 83 56 chr11 21663673 21664260 -129119293 - L2 LINE L2 -346 2968 2366 1007 283 80 20 chr11 21664266 21664665 -129118888 - LTR16A LTR ERVL 0 450 28 313 273 102 28 chr11 21664875 21665051 -129118502 + L2 LINE L2 3125 3313 0 225 296 104 16 chr11 21665067 21665192 -129118361 - MIR3 SINE MIR -7 201 66 630 244 95 143 chr11 21666605 21667122 -129116431 - L2 LINE L2 -6 3307 2816 386 20 20 0 chr11 21667172 21667223 -129116330 + (TC)n Simple_repeat Simple_repeat 2 53 0 234 150 0 0 chr11 21667223 21667263 -129116290 + (TG)n Simple_repeat Simple_repeat 2 41 0 275 243 39 29 chr11 21667547 21667650 -129115903 - LTR67 LTR ERVL -24 533 430 229 284 92 9 chr11 21668251 21668360 -129115193 - MLT1F LTR MaLR -106 436 319 303 146 0 0 chr11 21668434 21668489 -129115064 + (TCCC)n Simple_repeat Simple_repeat 3 57 0 2049 116 32 0 chr11 21668546 21668830 -129114723 - AluSg SINE Alu -17 293 1 484 246 122 44 chr11 21668835 21669092 -129114461 - MLT1F LTR MaLR -289 266 1 2131 110 0 3 chr11 21669137 21669450 -129114103 + AluSx SINE Alu 1 312 0 411 323 23 0 chr11 21669502 21669632 -129113921 - L3 LINE CR1 -166 1411 1279 262 265 78 49 chr11 21669632 21669734 -129113819 + MIR SINE MIR 1 105 -157 341 301 0 0 chr11 21670812 21670915 -129112638 + MIR SINE MIR 160 262 0 23 0 0 0 chr11 21671337 21671360 -129112193 + AT_rich Low_complexity Low_complexity 1 23 0 480 232 118 119 chr11 21671525 21671615 -129111938 - MIR SINE MIR 0 262 173 1980 106 4 14 chr11 21671615 21671890 -129111663 + AluSc SINE Alu 32 303 -6 480 232 118 119 chr11 21671890 21672060 -129111493 - MIR SINE MIR -89 173 2 605 212 14 7 chr11 21672334 21672480 -129111073 + MER105 DNA DNA 34 180 -24 282 183 72 45 chr11 21673239 21673354 -129110199 - L1ME4a LINE L1 -2 6079 1234 793 267 17 13 chr11 21673385 21673621 -129109932 - LTR16A1 LTR ERVL 0 457 221 505 287 69 29 chr11 21675184 21675358 -129108195 - MER63A DNA MER1_type -29 181 1 661 274 25 0 chr11 21675922 21676079 -129107474 + MIR SINE MIR 101 261 -1 36 23 0 0 chr11 21676363 21676406 -129107147 + AT_rich Low_complexity Low_complexity 1 43 0 1814 155 0 34 chr11 21676407 21676703 -129106850 - AluJo SINE Alu -26 286 1 1585 110 77 7 chr11 21676705 21677004 -129106549 - L1MA4 LINE L1 0 6300 5981 192 264 139 0 chr11 21677011 21677083 -129106470 + L2 LINE L2 2993 3074 -198 1395 131 84 7 chr11 21677280 21677577 -129105976 - L1MA4 LINE L1 0 6300 5981 189 0 0 0 chr11 21677690 21677711 -129105842 + (A)n Simple_repeat Simple_repeat 1 21 0 598 238 44 6 chr11 21677902 21678083 -129105470 - MER58A DNA MER1_type -1 223 36 294 304 98 9 chr11 21682805 21682917 -129100636 + L2 LINE L2 3181 3302 -11 565 179 34 162 chr11 21682952 21683186 -129100367 + MIR SINE MIR 56 259 -3 218 320 13 13 chr11 21684334 21684412 -129099141 + MIR SINE MIR 5 82 -180 412 260 16 16 chr11 21684513 21684636 -129098917 - MIR SINE MIR -2 260 138 2266 109 0 0 chr11 21684863 21685157 -129098396 + AluSg SINE Alu 1 294 -16 2498 67 0 0 chr11 21685289 21685588 -129097965 + AluY SINE Alu 1 299 -12 230 333 108 21 chr11 21685619 21685712 -129097841 - MIR SINE MIR -90 118 18 1165 288 75 53 chr11 21686092 21687060 -129096493 + L1MEd LINE L1 328 1362 -4948 1791 164 17 0 chr11 21687060 21687352 -129096201 + AluJo SINE Alu 1 297 -15 1165 288 75 53 chr11 21687352 21687603 -129095950 + L1MEd LINE L1 1362 1606 -4704 230 262 48 12 chr11 21687713 21687797 -129095756 + L1ME LINE L1 5667 5753 -409 626 146 9 9 chr11 21687805 21687915 -129095638 - Tigger1 DNA MER2_type -1 2417 2308 456 153 153 0 chr11 21687918 21688016 -129095537 - Tigger1 DNA MER2_type -419 1999 1887 4051 121 18 12 chr11 21688082 21688742 -129094811 + L1PB1 LINE L1 5485 6148 -3 31 88 0 0 chr11 21688980 21689060 -129094493 + AT_rich Low_complexity Low_complexity 1 80 0 1196 218 4 13 chr11 21690542 21690781 -129092772 - MER8 DNA MER2_type -1 238 2 30 45 0 0 chr11 21690930 21690974 -129092579 + AT_rich Low_complexity Low_complexity 1 44 0 325 304 67 7 chr11 21691961 21692096 -129091457 - MLT1L LTR MaLR -165 450 308 752 273 39 43 chr11 21693650 21693906 -129089647 + MLT1I LTR MaLR 112 366 -43 923 205 95 15 chr11 21695026 21695352 -129088201 - MSTD LTR MaLR 0 396 1 188 65 0 32 chr11 21695955 21695986 -129087567 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 21 57 0 0 chr11 21696259 21696294 -129087259 + AT_rich Low_complexity Low_complexity 1 35 0 1240 309 110 28 chr11 21696419 21697282 -129086271 + L2 LINE L2 2398 3312 -1 198 0 0 0 chr11 21697282 21697304 -129086249 + (GGAA)n Simple_repeat Simple_repeat 4 25 0 734 226 198 12 chr11 21697652 21697909 -129085644 - MLT1J2 LTR MaLR -122 328 24 387 0 0 0 chr11 21698978 21699021 -129084532 + (TCCA)n Simple_repeat Simple_repeat 2 44 0 348 322 35 0 chr11 21699101 21699216 -129084337 + MER91C DNA MER1_type 21 139 -1 401 351 74 74 chr11 21699257 21699622 -129083931 - L2 LINE L2 -2 3270 2906 265 149 15 45 chr11 21699770 21699837 -129083716 + Charlie7 DNA MER1_type 41 105 -2507 265 327 107 27 chr11 21700550 21700700 -129082853 + MIR SINE MIR 3 164 -98 3001 69 0 12 chr11 21700724 21701128 -129082425 + L1PA8 LINE L1 5767 6165 -7 361 343 144 3 chr11 21701522 21701834 -129081719 - L2 LINE L2 -398 2916 2561 2416 98 3 0 chr11 21702026 21702332 -129081221 - AluSp SINE Alu -6 307 1 244 311 107 10 chr11 21702369 21702472 -129081081 + L2 LINE L2 3159 3271 -1 588 236 0 8 chr11 21703001 21703124 -129080429 + L2 LINE L2 3191 3312 -1 209 205 64 64 chr11 21703262 21703340 -129080213 - MIR SINE MIR -153 109 32 2028 122 3 23 chr11 21703936 21704240 -129079313 - AluSx SINE Alu -14 298 1 33 25 0 0 chr11 21704423 21704463 -129079090 + AT_rich Low_complexity Low_complexity 1 40 0 449 135 80 0 chr11 21704467 21704630 -129078923 + (TA)n Simple_repeat Simple_repeat 1 176 0 569 121 58 17 chr11 21704667 21704840 -129078713 + (TA)n Simple_repeat Simple_repeat 1 180 0 305 211 56 33 chr11 21704847 21704937 -129078616 - L1MC4 LINE L1 -1339 6703 6612 338 181 38 0 chr11 21704943 21705048 -129078505 + (TA)n Simple_repeat Simple_repeat 2 110 0 235 239 0 54 chr11 21705048 21705140 -129078413 - L1MC4 LINE L1 -1340 6702 6616 347 184 27 41 chr11 21706043 21706171 -129077382 - MIR SINE MIR -50 212 88 2331 80 3 3 chr11 21706189 21706488 -129077065 - AluY SINE Alu -12 299 1 415 296 17 9 chr11 21706603 21706718 -129076835 + L2 LINE L2 3198 3313 0 421 290 0 10 chr11 21706824 21706924 -129076629 - MIR SINE MIR -108 154 56 196 333 148 0 chr11 21707231 21707312 -129076241 - MIR SINE MIR -98 164 72 205 176 0 0 chr11 21708286 21708320 -129075233 + (TG)n Simple_repeat Simple_repeat 2 35 0 213 339 18 0 chr11 21709067 21709123 -129074430 - L2 LINE L2 -19 3253 3197 611 287 91 23 chr11 21709773 21710038 -129073515 + MLT1I LTR MaLR 100 382 -27 585 312 85 68 chr11 21710699 21711273 -129072280 - MLT1K LTR MaLR 0 588 5 272 301 146 24 chr11 21711333 21711456 -129072097 + MIR3 SINE MIR 6 143 -65 235 317 208 0 chr11 21711537 21711638 -129071915 - MIR3 SINE MIR -45 163 42 247 276 86 29 chr11 21711937 21712042 -129071511 + MIR SINE MIR 2 112 -150 440 375 92 19 chr11 21712361 21712884 -129070669 + L2 LINE L2 2334 2894 -420 183 300 0 33 chr11 21713147 21713207 -129070346 + L2 LINE L2 3242 3299 -14 516 268 76 13 chr11 21713241 21713398 -129070155 + MIR SINE MIR 31 197 -65 716 205 70 60 chr11 21715438 21715623 -129067930 - MER5A DNA MER1_type -2 187 1 697 266 34 34 chr11 21716205 21716281 -129067272 + MIR SINE MIR 25 100 -162 2656 91 13 11 chr11 21716281 21716653 -129066900 - THE1C LTR MaLR -2 373 1 697 266 34 34 chr11 21716653 21716783 -129066770 + MIR SINE MIR 99 231 -31 301 277 0 43 chr11 21717268 21717362 -129066191 - L1MC4 LINE L1 -1337 6705 6616 232 213 100 0 chr11 21717380 21717460 -129066093 - L1MC4 LINE L1 -1339 6703 6616 2166 89 45 3 chr11 21717519 21717811 -129065742 - AluY SINE Alu -7 304 1 376 283 0 58 chr11 21717848 21717968 -129065585 + MIR SINE MIR 31 143 -119 348 296 51 0 chr11 21717987 21718085 -129065468 - MIR SINE MIR -140 122 20 2425 66 0 16 chr11 21718634 21718939 -129064614 + AluY SINE Alu 1 300 -11 367 299 85 30 chr11 21720332 21720496 -129063057 - MIR SINE MIR -70 192 20 180 0 0 0 chr11 21720915 21720935 -129062618 + (A)n Simple_repeat Simple_repeat 1 20 0 276 247 52 13 chr11 21721347 21721424 -129062129 - MIR3 SINE MIR -25 183 104 186 292 21 83 chr11 21721415 21721511 -129062042 + MIR SINE MIR 36 125 -83 * 2081 78 4 11 chr11 21721633 21721903 -129061650 - AluSc SINE Alu -8 301 34 201 351 0 0 chr11 21722081 21722138 -129061415 + L2 LINE L2 3034 3090 -182 2102 140 6 26 chr11 21722449 21722800 -129060753 + MER2 DNA MER2_type 1 344 0 2071 91 24 11 chr11 21724223 21724510 -129059043 + AluSg SINE Alu 1 291 -19 1014 191 18 28 chr11 21726335 21726618 -129056935 + L1MD3 LINE L1 7715 7994 -1 1715 172 60 0 chr11 21726633 21726918 -129056635 + AluJo SINE Alu 4 305 -7 22 0 0 0 chr11 21726920 21726942 -129056611 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr11 21727044 21727080 -129056473 + AT_rich Low_complexity Low_complexity 1 36 0 717 22 0 0 chr11 21729111 21729200 -129054353 + L1PA2 LINE L1 6065 6153 -2 276 146 0 0 chr11 21729763 21729804 -129053749 - 5S rRNA rRNA -80 41 1 670 47 0 0 chr11 21729804 21729889 -129053664 - 5S rRNA rRNA -2 119 35 235 301 125 22 chr11 21730873 21731009 -129052544 - LTR16B LTR ERVL -269 195 46 25 65 0 0 chr11 21731881 21731927 -129051626 + AT_rich Low_complexity Low_complexity 1 46 0 279 262 97 58 chr11 21732017 21732120 -129051433 - L2 LINE L2 -8 3264 3158 385 356 83 11 chr11 21732369 21732549 -129051004 - MIR3 SINE MIR -10 198 6 33 0 0 0 chr11 21732696 21732729 -129050824 + AT_rich Low_complexity Low_complexity 1 33 0 259 295 105 19 chr11 21733092 21733197 -129050356 + L2 LINE L2 3141 3254 -18 36 53 0 0 chr11 21733251 21733308 -129050245 + AT_rich Low_complexity Low_complexity 1 57 0 24 0 0 0 chr11 21733748 21733772 -129049781 + AT_rich Low_complexity Low_complexity 1 24 0 470 285 65 48 chr11 21734802 21734988 -129048565 + MIR SINE MIR 4 192 -70 1162 181 209 17 chr11 21735057 21735416 -129048137 + MSTC LTR MaLR 1 428 0 339 78 0 0 chr11 21736300 21736351 -129047202 + (CA)n Simple_repeat Simple_repeat 2 52 0 392 318 93 0 chr11 21736896 21737047 -129046506 - MIR3 SINE MIR -10 198 34 295 357 48 8 chr11 21738222 21738348 -129045205 - L2 LINE L2 0 3272 3142 287 262 135 29 chr11 21739079 21739323 -129044230 - HAL1 LINE L1 -49 2458 2189 210 347 93 20 chr11 21739433 21739583 -129043970 + MIR SINE MIR 57 217 -45 732 282 117 43 chr11 21740210 21740604 -129042949 - LTR16A LTR ERVL 0 450 28 2888 199 8 72 chr11 21741413 21742151 -129041402 - LTR8 LTR ERV1 0 691 1 1924 154 76 19 chr11 21742510 21742933 -129040620 - L1MC3 LINE L1 0 7785 7339 581 135 36 0 chr11 21742930 21743041 -129040512 - L1MC3 LINE L1 -779 7006 6892 * 308 318 103 0 chr11 21743558 21743665 -129039888 + L2 LINE L2 3154 3271 -1 208 357 20 77 chr11 21745327 21745631 -129037922 + L2 LINE L2 2776 3060 -212 361 303 34 25 chr11 21745779 21745898 -129037655 + MIR SINE MIR 8 127 -135 355 303 38 15 chr11 21746029 21746161 -129037392 + MLT2E LTR ERVL 38 172 -456 212 382 24 0 chr11 21746842 21746965 -129036588 + L2 LINE L2 2866 2991 -281 456 285 11 37 chr11 21747960 21748150 -129035403 + MIR SINE MIR 4 189 -65 986 207 5 28 chr11 21748432 21748649 -129034904 + MER20 DNA MER1_type 4 215 -4 596 259 68 76 chr11 21748885 21749136 -129034417 + MIR SINE MIR 12 260 -2 333 0 0 0 chr11 21749936 21749973 -129033580 + (CA)n Simple_repeat Simple_repeat 2 38 0 1088 161 20 5 chr11 21750835 21751034 -129032519 - MER20 DNA MER1_type -7 212 11 354 315 8 0 chr11 21751170 21751297 -129032256 - MER94 DNA DNA -6 128 1 235 186 29 71 chr11 21751327 21751397 -129032156 - MIR SINE MIR -124 138 72 366 297 132 11 chr11 21751573 21751783 -129031770 + MIR SINE MIR 15 255 -7 274 270 27 14 chr11 21752154 21752228 -129031325 + MIR3 SINE MIR 83 157 -51 240 237 35 26 chr11 21752365 21752479 -129031074 + L1ME4a LINE L1 6002 6116 -5 345 250 142 8 chr11 21753426 21753546 -129030007 + MIR SINE MIR 127 262 0 284 281 123 0 chr11 21753875 21753989 -129029564 - L2 LINE L2 0 3272 3145 585 256 68 32 chr11 21754141 21754391 -129029162 - MIR SINE MIR -1 261 3 2336 272 126 26 chr11 21754469 21755603 -129027950 + L2 LINE L2 2059 3313 0 513 287 22 22 chr11 21755605 21755786 -129027767 - MIR SINE MIR -17 245 65 531 0 0 0 chr11 21756207 21756266 -129027287 + (TTTAG)n Simple_repeat Simple_repeat 5 63 0 413 303 17 25 chr11 21757112 21757231 -129026322 - MER5B DNA MER1_type -60 118 1 424 129 0 0 chr11 21758131 21758193 -129025360 - MER57B LTR ERV1 -372 62 1 207 100 0 0 chr11 21758406 21758436 -129025117 + (CACCAT)n Simple_repeat Simple_repeat 4 33 0 183 100 0 0 chr11 21759537 21759567 -129023986 + (T)n Simple_repeat Simple_repeat 1 30 0 238 206 49 69 chr11 21759691 21759793 -129023760 - L1ME4a LINE L1 -67 6054 5955 584 211 65 0 chr11 21759823 21759946 -129023607 - FLAM_A SINE Alu -2 131 1 533 293 44 4 chr11 21760017 21760246 -129023307 - L1ME4a LINE L1 -245 5876 5639 260 289 41 21 chr11 21760402 21760499 -129023054 + MIR SINE MIR 66 164 -98 24 32 0 0 chr11 21760631 21760662 -129022891 + AT_rich Low_complexity Low_complexity 1 31 0 1986 118 18 4 chr11 21760691 21761020 -129022533 + AluSx SINE Alu 1 333 0 1989 125 7 4 chr11 21761304 21761611 -129021942 - AluSg SINE Alu 0 308 1 409 261 91 8 chr11 21761966 21762219 -129021334 - L1MEc LINE L1 -4839 1471 1198 282 100 0 50 chr11 21762213 21762273 -129021280 - L1PA15 LINE L1 -3 6162 6106 * 4209 101 5 9 chr11 21762270 21762927 -129020626 - L1PA13 LINE L1 -117 6046 5393 1755 186 5 0 chr11 21762924 21763301 -129020252 - L1PA13 LINE L1 -982 5164 4786 * 10575 170 23 8 chr11 21763301 21765437 -129018116 + L1PA13 LINE L1 2605 4774 -1372 473 262 88 55 chr11 21765439 21765659 -129017894 - L1MEc LINE L1 -4943 1176 965 249 57 0 0 chr11 21765659 21765694 -129017859 + (CA)n Simple_repeat Simple_repeat 1 35 0 473 262 88 55 chr11 21765694 21765999 -129017554 - L1MEc LINE L1 -5154 965 634 707 208 25 6 chr11 21766012 21766171 -129017382 + MER3 DNA MER1_type 1 162 -47 979 270 89 62 chr11 21766205 21766813 -129016740 - L1MEc LINE L1 -5492 627 4 259 252 145 38 chr11 21767503 21767634 -129015919 + L2 LINE L2 3017 3161 -152 360 194 14 14 chr11 21767665 21767737 -129015816 + MER5C DNA MER1_type 8 79 -245 2271 119 0 10 chr11 21768099 21768410 -129015143 - AluSx SINE Alu -4 308 1 626 274 117 33 chr11 21768893 21769312 -129014241 - L1ME4a LINE L1 -1 6120 5667 191 364 23 45 chr11 21770061 21770193 -129013360 + MIR SINE MIR 16 144 -64 24 32 0 0 chr11 21770241 21770272 -129013281 + AT_rich Low_complexity Low_complexity 1 31 0 2221 292 146 50 chr11 21772103 21774303 -129009250 - L2 LINE L2 0 3313 718 340 183 0 117 chr11 21774392 21774529 -129009024 - MER103 DNA DNA 0 166 46 21 36 0 0 chr11 21774534 21774562 -129008991 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr11 21774691 21774719 -129008834 + AT_rich Low_complexity Low_complexity 1 28 0 336 324 43 57 chr11 21774759 21775040 -129008513 - L1 LINE L1 -1631 4515 4239 1627 176 0 47 chr11 21775588 21775939 -129007614 - AluJb SINE Alu 0 339 3 22 88 0 0 chr11 21776251 21776308 -129007245 + AT_rich Low_complexity Low_complexity 1 57 0 889 302 36 46 chr11 21777824 21778241 -129005312 - LTR16A LTR ERVL -14 436 24 1738 115 0 0 chr11 21778606 21778840 -129004713 - AluSx SINE Alu -16 296 63 420 306 0 0 chr11 21779639 21779747 -129003806 + MIR3 SINE MIR 99 206 -2 3397 107 6 2 chr11 21779956 21780452 -129003101 + L1PB1 LINE L1 5639 6136 -15 22 0 0 0 chr11 21780483 21780505 -129003048 + AT_rich Low_complexity Low_complexity 1 22 0 1242 267 120 24 chr11 21780694 21781444 -129002109 - L2 LINE L2 -1 3312 2496 506 252 120 45 chr11 21781534 21781868 -129001685 - L2 LINE L2 -181 3132 2776 2734 49 0 0 chr11 21782050 21782377 -129001176 - L1PA7 LINE L1 -5 6149 5823 614 248 141 83 chr11 21782936 21783488 -129000065 - L1ME4a LINE L1 -5 6116 5533 237 285 51 13 chr11 21783537 21783695 -128999858 - L1ME4a LINE L1 -2331 5477 5314 402 299 164 48 chr11 21783748 21784552 -128999001 - L1ME4a LINE L1 -920 5226 4330 522 315 76 13 chr11 21784911 21785149 -128998404 - MIR SINE MIR -8 254 2 330 321 82 41 chr11 21785289 21785485 -128998068 + MIR3 SINE MIR 3 206 -2 417 314 131 0 chr11 21785694 21785847 -128997706 - MIR3 SINE MIR -3 205 33 419 299 108 40 chr11 21786020 21786623 -128996930 + L1MC4a LINE L1 5258 5901 -1907 221 229 0 21 chr11 21788016 21788064 -128995489 + L2 LINE L2 2992 3038 -234 229 248 26 115 chr11 21788155 21788268 -128995285 + L2 LINE L2 3200 3302 -11 627 240 36 57 chr11 21789106 21789298 -128994255 + MIR SINE MIR 29 216 -46 1561 144 23 107 chr11 21789612 21789959 -128993594 - AluYb8 SINE Alu 0 318 1 670 347 3 45 chr11 21790047 21790384 -128993169 - L2 LINE L2 -31 3282 2960 290 276 153 0 chr11 21790402 21790500 -128993053 + MIR SINE MIR 35 147 -115 951 190 56 36 chr11 21790979 21791307 -128992246 + MER33 DNA MER1_type 1 324 0 1398 259 83 89 chr11 21791527 21791720 -128991833 - MER21B LTR ERV1 -149 714 521 1807 167 21 0 chr11 21791720 21791919 -128991634 - AluSx SINE Alu 0 312 123 180 111 0 0 chr11 21791919 21791946 -128991607 + (TG)n Simple_repeat Simple_repeat 2 28 0 1807 167 21 0 chr11 21791946 21792072 -128991481 - AluSx SINE Alu -189 123 1 1398 259 83 89 chr11 21792072 21792573 -128990980 - MER21B LTR ERV1 -342 521 24 1257 290 83 34 chr11 21792633 21793427 -128990126 - L2 LINE L2 0 3313 2481 338 308 76 27 chr11 21793434 21793619 -128989934 - L2 LINE L2 -484 2830 2637 314 248 99 41 chr11 21795375 21795496 -128988057 + MIR SINE MIR 20 147 -115 397 197 26 132 chr11 21795501 21795592 -128987961 - L2 LINE L2 -2 3311 3212 2047 137 0 14 chr11 21795592 21795885 -128987668 + AluSx SINE Alu 1 289 -23 276 30 0 0 chr11 21795891 21795924 -128987629 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 397 197 26 132 chr11 21795924 21795977 -128987576 - L2 LINE L2 -106 3207 3176 22 0 0 0 chr11 21796067 21796089 -128987464 + AT_rich Low_complexity Low_complexity 1 22 0 2380 113 0 0 chr11 21796675 21796984 -128986569 + AluSx SINE Alu 1 309 -3 570 297 179 0 chr11 21797151 21797363 -128986190 - MIR SINE MIR 0 262 13 1123 71 0 7 chr11 21798075 21798229 -128985324 + L1PA11 LINE L1 6022 6174 0 23 33 0 0 chr11 21798562 21798592 -128984961 + AT_rich Low_complexity Low_complexity 1 30 0 299 324 9 38 chr11 21798705 21798810 -128984743 + MIR SINE MIR 20 121 -141 461 259 147 12 chr11 21799991 21800161 -128983392 + MIR SINE MIR 6 198 -64 225 217 43 14 chr11 21800261 21800330 -128983223 + MIR SINE MIR 179 249 -13 308 186 34 0 chr11 21802594 21802653 -128980900 - L2 LINE L2 -217 3055 2995 493 228 30 0 chr11 21803061 21803162 -128980391 + MER5A DNA MER1_type 9 112 -77 184 306 19 83 chr11 21803249 21803357 -128980196 + MER5A DNA MER1_type 16 116 -73 402 315 16 8 chr11 21803481 21803608 -128979945 - MER5B DNA MER1_type -1 177 50 262 278 0 42 chr11 21803654 21803726 -128979827 + MER5B DNA MER1_type 110 178 0 1062 146 195 71 chr11 21804390 21804657 -128978896 - AluJb SINE Alu -2 300 1 2512 134 23 28 chr11 21805537 21805971 -128977582 + MSTB1 LTR MaLR 1 432 0 2319 109 0 0 chr11 21806385 21806689 -128976864 + AluSx SINE Alu 1 304 -8 198 174 0 0 chr11 21807555 21807601 -128975952 + (CATA)n Simple_repeat Simple_repeat 4 49 0 24 0 0 0 chr11 21807833 21807857 -128975696 + AT_rich Low_complexity Low_complexity 1 24 0 324 256 12 0 chr11 21808988 21809070 -128974483 - MIR SINE MIR -14 248 166 928 281 48 33 chr11 21809335 21809812 -128973741 - L1MC4a LINE L1 -1872 5936 5449 255 61 0 0 chr11 21809812 21809845 -128973708 + (CA)n Simple_repeat Simple_repeat 2 34 0 928 281 48 33 chr11 21809845 21809886 -128973667 - L1MC4a LINE L1 -2359 5449 5410 832 349 213 10 chr11 21809966 21810746 -128972807 + L2 LINE L2 1785 2722 -592 291 254 12 98 chr11 21810780 21810929 -128972624 - MIR SINE MIR -66 196 3 182 396 70 21 chr11 21811431 21811618 -128971935 + L2 LINE L2 2659 2854 -460 242 254 18 0 chr11 21812315 21812370 -128971183 - MIR SINE MIR -77 131 76 309 339 27 9 chr11 21812964 21813076 -128970477 + MER91B DNA MER1_type 36 149 -41 250 294 135 16 chr11 21813267 21813393 -128970160 + MIR SINE MIR 121 261 -1 771 296 50 0 chr11 21813789 21814029 -128969524 + MIR SINE MIR 11 262 0 349 307 129 7 chr11 21814043 21814183 -128969370 - L2 LINE L2 -1 3312 3156 458 354 122 8 chr11 21814214 21814277 -128969276 - L2 LINE L2 -235 3037 2983 1503 200 33 20 chr11 21814277 21814577 -128968976 + AluJo SINE Alu 3 306 -6 458 354 122 8 chr11 21814577 21814898 -128968655 - L2 LINE L2 -289 2983 2614 2231 84 0 26 chr11 21815752 21816062 -128967491 - AluY SINE Alu -9 302 1 236 283 0 0 chr11 21816627 21816680 -128966873 + MER58A DNA MER1_type 2 54 -170 681 256 64 0 chr11 21816708 21816880 -128966673 + MER58A DNA MER1_type 42 224 0 423 0 0 0 chr11 21816982 21817029 -128966524 + (TG)n Simple_repeat Simple_repeat 2 48 0 228 296 182 0 chr11 21817310 21817398 -128966155 - MIR SINE MIR -133 129 26 244 280 65 24 chr11 21818468 21818636 -128964917 - MER89 LTR ERV1 -3 556 382 204 301 14 14 chr11 21819409 21819482 -128964071 + MIR SINE MIR 25 97 -111 373 309 176 19 chr11 21819801 21820011 -128963542 + MIR SINE MIR 20 262 0 894 275 17 8 chr11 21821194 21821430 -128962123 + MIR SINE MIR 6 243 -19 529 267 82 5 chr11 21821959 21822154 -128961399 + MER63A DNA MER1_type 1 210 0 23 0 0 0 chr11 21822260 21822283 -128961270 + AT_rich Low_complexity Low_complexity 1 23 0 2147 126 48 28 chr11 21822466 21822823 -128960730 - THE1B LTR MaLR 0 364 1 11426 97 13 2 chr11 21822823 21824385 -128959168 - THE1B-int LTR MaLR 0 1580 1 2095 110 52 52 chr11 21824385 21824532 -128959021 - THE1B LTR MaLR 0 364 218 2172 138 3 0 chr11 21824532 21824829 -128958724 - AluSq SINE Alu -13 300 3 2095 110 52 52 chr11 21824829 21825045 -128958508 - THE1B LTR MaLR -145 219 1 560 341 102 25 chr11 21825139 21825570 -128957983 + L2 LINE L2 219 682 -2632 1577 166 57 24 chr11 21825643 21825939 -128957614 - AluJb SINE Alu -6 306 1 1100 212 145 50 chr11 21826193 21826675 -128956878 - LTR10B LTR ERV1 -5 542 15 24 0 0 0 chr11 21827879 21827903 -128955650 + AT_rich Low_complexity Low_complexity 1 24 0 507 17 0 0 chr11 21828115 21828175 -128955378 + (CA)n Simple_repeat Simple_repeat 2 61 0 333 307 227 0 chr11 21828521 21828684 -128954869 - MIR SINE MIR -11 251 52 466 168 10 10 chr11 21828799 21828900 -128954653 - L1MB8 LINE L1 0 6178 6078 819 179 19 71 chr11 21828900 21828944 -128954609 - L1MB4 LINE L1 -6 6174 6129 1835 162 0 10 chr11 21828944 21829240 -128954313 - AluSx SINE Alu -19 293 1 819 179 19 71 chr11 21829240 21829400 -128954153 - L1MB4 LINE L1 -51 6129 5979 968 163 22 11 chr11 21829431 21829609 -128953944 + L1M3 LINE L1 5554 5733 -447 222 37 0 0 chr11 21829745 21829772 -128953781 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 7254 35 0 0 chr11 21829774 21830771 -128952782 - L1PA4 LINE L1 -13 6142 5141 1710 142 58 18 chr11 21830774 21831071 -128952482 - AluSq SINE Alu 0 308 1 714 212 52 65 chr11 21831077 21831308 -128952245 - MER106A DNA MER1_type 0 236 9 803 245 51 31 chr11 21831308 21831565 -128951988 + MIR SINE MIR 1 262 0 478 319 13 19 chr11 21832369 21832526 -128951027 + MIR SINE MIR 107 262 0 1421 200 108 3 chr11 21833671 21834006 -128949547 - MLT1A2 LTR MaLR -4 370 1 2811 181 11 65 chr11 21834037 21834684 -128948869 - LTR9 LTR ERV1 0 612 1 672 107 0 0 chr11 21834687 21834790 -128948763 + (TCCCC)n Simple_repeat Simple_repeat 2 104 0 297 218 10 20 chr11 21834898 21834999 -128948554 + CT-rich Low_complexity Low_complexity 4 103 0 888 269 25 21 chr11 21835228 21835466 -128948087 + MIR SINE MIR 23 261 -1 183 156 0 0 chr11 21835635 21835667 -128947886 + GA-rich Low_complexity Low_complexity 1 32 0 359 272 59 59 chr11 21835849 21835985 -128947568 + MIR3 SINE MIR 15 150 -58 1429 153 84 4 chr11 21836037 21836311 -128947242 - L1MC1 LINE L1 -18 6315 6020 432 292 36 22 chr11 21836816 21836953 -128946600 - MIR3 SINE MIR -49 159 21 359 296 127 73 chr11 21838023 21838243 -128945310 + MIR SINE MIR 7 238 -24 311 300 0 22 chr11 21839822 21839912 -128943641 + L2 LINE L2 2654 2741 -573 288 390 58 6 chr11 21840028 21840200 -128943353 + L2 LINE L2 2901 3081 -191 546 289 58 67 chr11 21840519 21840865 -128942688 - MLT1I LTR MaLR -57 352 10 396 323 82 9 chr11 21840875 21841095 -128942458 + L2 LINE L2 708 943 -2371 225 186 102 0 chr11 21841099 21841158 -128942395 - LTR16A LTR ERVL 0 450 386 490 343 12 0 chr11 21841529 21841701 -128941852 + MIR SINE MIR 48 221 -41 249 250 125 23 chr11 21841729 21841817 -128941736 - MIR SINE MIR -74 134 38 396 0 0 0 chr11 21844359 21844403 -128939150 + (CA)n Simple_repeat Simple_repeat 2 45 0 2040 333 95 29 chr11 21844943 21846467 -128937086 + L2 LINE L2 1685 3308 -5 914 330 23 6 chr11 21846662 21847013 -128936540 - MLT1I LTR MaLR -47 362 6 214 162 0 0 chr11 21847946 21847983 -128935570 + (ATTG)n Simple_repeat Simple_repeat 2 38 0 395 179 98 71 chr11 21850064 21850176 -128933377 - MER5B DNA MER1_type -63 115 1 233 56 0 28 chr11 21851489 21851525 -128932028 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 221 306 190 0 chr11 21851670 21851791 -128931762 + MIR SINE MIR 48 191 -71 601 300 93 49 chr11 21851802 21852349 -128931204 - MLT1L LTR MaLR 0 615 45 345 82 0 0 chr11 21852349 21852398 -128931155 + (TG)n Simple_repeat Simple_repeat 2 50 0 644 256 97 38 chr11 21852601 21852950 -128930603 + L1ME4a LINE L1 5501 5869 -252 24 0 0 0 chr11 21853309 21853333 -128930220 + AT_rich Low_complexity Low_complexity 1 24 0 1506 180 104 9 chr11 21853479 21853631 -128929922 - MLT1A1 LTR MaLR 0 365 229 2369 88 7 0 chr11 21853631 21853928 -128929625 - AluSp SINE Alu -14 299 1 1506 180 104 9 chr11 21853928 21854102 -128929451 - MLT1A1 LTR MaLR -136 229 8 387 295 9 0 chr11 21854967 21855072 -128928481 + MIR SINE MIR 157 262 0 208 339 58 41 chr11 21855066 21855187 -128928366 - MIR SINE MIR -109 153 31 * 494 110 0 66 chr11 21855296 21855409 -128928144 + L1PB1 LINE L1 6060 6166 0 284 289 3 16 chr11 21855456 21855566 -128927987 + MIR SINE MIR 19 127 -81 1125 175 8 85 chr11 21856351 21856597 -128926956 + AluJo SINE Alu 11 237 -75 480 174 0 0 chr11 21856600 21856692 -128926861 + GA-rich Low_complexity Low_complexity 2 93 0 3609 153 14 39 chr11 21858260 21858979 -128924574 + L1MB3 LINE L1 5480 6180 -3 27 0 0 0 chr11 21859121 21859148 -128924405 + AT_rich Low_complexity Low_complexity 1 27 0 26 64 0 0 chr11 21860225 21860272 -128923281 + AT_rich Low_complexity Low_complexity 1 47 0 393 275 74 58 chr11 21860399 21860588 -128922965 + MIR3 SINE MIR 17 208 0 261 146 0 0 chr11 21861210 21861258 -128922295 + (TG)n Simple_repeat Simple_repeat 1 48 0 7212 180 78 77 chr11 21861302 21863054 -128920499 - MER52A LTR ERV1 0 1755 1 352 291 133 30 chr11 21863063 21863228 -128920325 + MIR3 SINE MIR 21 202 -6 229 353 29 10 chr11 21863219 21863321 -128920232 - L2 LINE L2 -153 3119 3016 * 226 319 117 32 chr11 21863583 21863677 -128919876 - L2 LINE L2 -2 3311 3210 459 294 71 6 chr11 21863879 21864049 -128919504 + MIR SINE MIR 74 254 -8 489 308 58 39 chr11 21864512 21864720 -128918833 + MIR SINE MIR 22 233 -29 184 200 50 0 chr11 21864757 21864797 -128918756 + L2 LINE L2 3256 3297 -16 746 313 80 16 chr11 21864975 21865457 -128918096 - L2 LINE L2 -93 3220 2716 201 39 0 0 chr11 21865767 21865793 -128917760 + (CAT)n Simple_repeat Simple_repeat 2 27 0 248 275 83 42 chr11 21867163 21867283 -128916270 + MIR SINE MIR 73 197 -65 30 45 0 0 chr11 21867702 21867746 -128915807 + AT_rich Low_complexity Low_complexity 1 44 0 1058 263 48 35 chr11 21868328 21868704 -128914849 + L2 LINE L2 2921 3301 -12 421 303 36 12 chr11 21868772 21868937 -128914616 - MLT1L LTR MaLR -10 605 437 316 261 104 9 chr11 21869815 21869930 -128913623 - MIR3 SINE MIR -46 162 37 242 167 0 0 chr11 21870459 21870501 -128913052 + MIR SINE MIR 81 122 -140 2091 124 0 0 chr11 21870764 21871090 -128912463 - AluSq SINE Alu 0 326 1 180 186 23 23 chr11 21871783 21871826 -128911727 + MIR SINE MIR 111 153 -109 858 224 60 43 chr11 21873924 21874156 -128909397 + MIR SINE MIR 27 262 0 596 294 104 14 chr11 21874164 21874375 -128909178 - MIR SINE MIR -16 246 17 219 349 12 0 chr11 21874930 21875013 -128908540 + L2 LINE L2 3186 3269 -3 406 317 28 7 chr11 21875066 21875208 -128908345 + MIR SINE MIR 97 241 -21 273 340 64 21 chr11 21875302 21875490 -128908063 - LTR33 LTR ERVL -66 455 260 2066 128 0 3 chr11 21875784 21876074 -128907479 + AluSx SINE Alu 1 289 -23 512 237 20 7 chr11 21876223 21876375 -128907178 + MER103 DNA DNA 1 154 -12 2511 73 3 13 chr11 21876574 21876889 -128906664 + AluSp SINE Alu 1 312 -1 2190 128 22 27 chr11 21878309 21878675 -128904878 - THE1B LTR MaLR 0 364 1 709 277 30 131 chr11 21878694 21879123 -128904430 - L2 LINE L2 -5 3308 2923 363 217 6 121 chr11 21879656 21879787 -128903766 - MER5B DNA MER1_type -5 173 61 2003 163 119 13 chr11 21879787 21880174 -128903379 - MSTA LTR MaLR 0 428 1 363 217 6 121 chr11 21880174 21880199 -128903354 - MER5B DNA MER1_type -117 61 35 226 200 29 29 chr11 21880418 21880488 -128903065 + (TG)n Simple_repeat Simple_repeat 2 71 0 703 222 15 45 chr11 21880541 21880739 -128902814 + MIR SINE MIR 66 257 -5 249 186 0 0 chr11 21882329 21882372 -128901181 + (TG)n Simple_repeat Simple_repeat 1 43 0 560 239 8 31 chr11 21882449 21882579 -128900974 - L2 LINE L2 0 3272 3146 256 59 29 0 chr11 21882680 21882714 -128900839 + U2 snRNA snRNA 1 35 -153 380 252 138 38 chr11 21882723 21882882 -128900671 - MIR SINE MIR -81 181 7 383 329 36 14 chr11 21883453 21883593 -128899960 - L2 LINE L2 -1 3271 3129 192 348 155 37 chr11 21884002 21885769 -128897784 - L2 LINE L2 -656 2658 684 1923 135 0 34 chr11 21885834 21886131 -128897422 + AluSx SINE Alu 1 287 -25 253 281 0 0 chr11 21886131 21886220 -128897333 + L1MC4 LINE L1 6615 6703 -1339 647 267 70 0 chr11 21886699 21886871 -128896682 + MIR SINE MIR 2 185 -77 1998 178 42 31 chr11 21886892 21887421 -128896132 + MLT2A2 LTR ERVL 1 542 -12 180 240 80 0 chr11 21887940 21887990 -128895563 - MIR SINE MIR -140 122 69 23 33 0 0 chr11 21889678 21889708 -128893845 + AT_rich Low_complexity Low_complexity 1 30 0 405 0 0 0 chr11 21890023 21890068 -128893485 + (CA)n Simple_repeat Simple_repeat 2 46 0 2026 151 3 0 chr11 21890280 21890579 -128892974 + AluSx SINE Alu 1 300 -12 978 190 87 7 chr11 21890629 21890929 -128892624 - MER33 DNA MER1_type 0 324 1 2255 112 0 3 chr11 21890969 21891274 -128892279 - AluSc SINE Alu -5 304 1 421 217 104 0 chr11 21892495 21892601 -128890952 + MLT1B LTR MaLR 6 122 -268 1459 206 84 22 chr11 21892601 21892932 -128890621 - MLT1A2 LTR MaLR 0 593 24 1061 195 58 27 chr11 21892959 21893220 -128890333 + MLT1B LTR MaLR 122 390 0 524 325 30 0 chr11 21894320 21894523 -128889030 + L2 LINE L2 2177 2385 -929 3433 122 0 36 chr11 21894529 21894784 -128888769 + L1MA3 LINE L1 5576 5839 -466 2086 128 27 0 chr11 21894784 21895080 -128888473 - AluSx SINE Alu -8 304 1 3433 122 0 36 chr11 21895080 21895408 -128888145 + L1MA3 LINE L1 5839 6138 -167 1025 119 23 6 chr11 21895461 21895637 -128887916 + L1MA3 LINE L1 6127 6305 0 185 405 0 0 chr11 21895672 21895751 -128887802 + L2 LINE L2 2376 2454 -860 347 320 52 75 chr11 21896007 21896447 -128887106 - MLT1K LTR MaLR 0 588 159 913 329 19 62 chr11 21896695 21897178 -128886375 + L2 LINE L2 2852 3313 0 1000 303 126 52 chr11 21897227 21897821 -128885732 - L3 LINE CR1 -87 1490 853 231 60 30 60 chr11 21899679 21899746 -128883807 + (TA)n Simple_repeat Simple_repeat 1 65 0 203 391 9 19 chr11 21899763 21899978 -128883575 - L3 LINE CR1 -714 863 651 395 253 121 15 chr11 21900343 21900541 -128883012 - L1ME4a LINE L1 -63 6058 5840 21 0 0 0 chr11 21901647 21901668 -128881885 + AT_rich Low_complexity Low_complexity 1 21 0 209 339 0 0 chr11 21901711 21901767 -128881786 - MIR SINE MIR -12 250 195 282 73 0 0 chr11 21901935 21901976 -128881577 + (TG)n Simple_repeat Simple_repeat 1 41 0 267 130 0 0 chr11 21902772 21902826 -128880727 + (TG)n Simple_repeat Simple_repeat 2 55 0 733 309 14 18 chr11 21902935 21903152 -128880401 - MIR SINE MIR 0 262 47 388 239 94 17 chr11 21903174 21903291 -128880262 + MER94 DNA DNA 1 126 -8 363 258 56 0 chr11 21905128 21905217 -128878336 + MIR SINE MIR 157 250 -12 240 164 0 115 chr11 21905844 21905905 -128877648 + MLT1A2 LTR MaLR 313 366 -8 5477 160 11 27 chr11 21905987 21907140 -128876413 - L1MA7 LINE L1 0 6291 5157 1618 199 11 0 chr11 21907521 21907803 -128875750 + AluJb SINE Alu 12 296 -16 355 188 58 109 chr11 21908362 21908478 -128875075 - MLT1H LTR MaLR 0 549 453 774 241 16 21 chr11 21908906 21909097 -128874456 - MER58A DNA MER1_type -15 209 20 413 95 0 168 chr11 21910269 21910364 -128873189 + MADE1 DNA Mariner 1 79 -1 202 314 59 39 chr11 21910474 21910576 -128872977 - MIR SINE MIR -148 114 11 888 234 14 29 chr11 21910953 21911162 -128872391 - MIR SINE MIR -39 223 18 2337 105 0 3 chr11 21911175 21911488 -128872065 + AluSx SINE Alu 1 312 0 715 253 166 25 chr11 21911509 21912004 -128871549 - LTR50 LTR ERVL -3 792 181 7277 45 2 0 chr11 21912106 21913713 -128869840 + L1PA4 LINE L1 4541 6151 -4 4402 209 59 14 chr11 21913716 21915913 -128867640 + L1MC1 LINE L1 3912 6193 -140 4781 188 67 65 chr11 21915913 21917469 -128866084 + L1M1 LINE L1 13 1875 -5690 1921 142 16 14 chr11 21917468 21917979 -128865574 + L1MA2 LINE L1 4957 5470 -746 * 315 196 0 0 chr11 21917979 21918030 -128865523 - AluSp SINE Alu -148 155 105 710 161 8 0 chr11 21918030 21918148 -128865405 + AluSg/x SINE Alu 179 297 -15 4994 133 20 2 chr11 21918148 21918977 -128864576 + L1MA2 LINE L1 5461 6304 0 30 0 0 0 chr11 21918977 21919007 -128864546 + AT_rich Low_complexity Low_complexity 1 30 0 608 219 15 0 chr11 21919012 21919149 -128864404 + L1MC1 LINE L1 6186 6324 -9 183 42 0 0 chr11 21921442 21921466 -128862087 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 423 0 0 0 chr11 21922039 21922086 -128861467 + (CA)n Simple_repeat Simple_repeat 2 48 0 738 256 64 0 chr11 21922188 21922360 -128861193 - MER58A DNA MER1_type 0 224 42 256 283 0 0 chr11 21922388 21922441 -128861112 - MER58A DNA MER1_type -170 54 2 2221 91 0 25 chr11 21923007 21923326 -128860227 + AluY SINE Alu 1 311 0 833 250 161 23 chr11 21923347 21923954 -128859599 - LTR50 LTR ERVL -3 792 56 278 307 134 31 chr11 21924065 21924192 -128859361 + L2 LINE L2 3122 3261 -11 449 268 51 31 chr11 21924905 21925075 -128858478 + MIR3 SINE MIR 23 196 -12 2038 127 0 3 chr11 21925124 21925431 -128858122 - AluSx SINE Alu 0 306 1 22 0 0 0 chr11 21925735 21925757 -128857796 + AT_rich Low_complexity Low_complexity 1 22 0 276 175 0 0 chr11 21925934 21925997 -128857556 + (TCCA)n Simple_repeat Simple_repeat 2 64 0 2360 93 3 0 chr11 21926155 21926456 -128857097 - AluSq SINE Alu -11 302 1 456 274 62 0 chr11 21926476 21926622 -128856931 + MIR SINE MIR 88 242 -20 218 311 74 30 chr11 21927345 21927480 -128856073 - L3 LINE CR1 -392 1185 1045 328 328 63 50 chr11 21927735 21927952 -128855601 + MIR SINE MIR 13 231 -31 240 301 175 0 chr11 21928582 21928685 -128854868 - MIR3 SINE MIR -3 205 85 309 304 111 23 chr11 21928748 21928919 -128854634 + MIR SINE MIR 71 256 -6 29 0 0 0 chr11 21929456 21929485 -128854068 + AT_rich Low_complexity Low_complexity 1 29 0 395 275 76 0 chr11 21929909 21930080 -128853473 - L1ME3 LINE L1 -227 5935 5752 23 0 0 0 chr11 21930408 21930431 -128853122 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 21930543 21930566 -128852987 + AT_rich Low_complexity Low_complexity 1 23 0 2126 121 3 0 chr11 21930932 21931229 -128852324 + AluSx SINE Alu 1 298 -14 474 259 32 79 chr11 21931845 21931941 -128851612 + MIR SINE MIR 2 86 -176 1517 222 50 56 chr11 21931941 21932445 -128851108 + MLT1D LTR MaLR 1 501 -4 474 259 32 79 chr11 21932445 21932537 -128851016 + MIR SINE MIR 86 181 -81 27 29 0 0 chr11 21934325 21934359 -128849194 + AT_rich Low_complexity Low_complexity 1 34 0 583 214 69 38 chr11 21935250 21935409 -128848144 - MER5B DNA MER1_type 0 178 15 1029 203 0 11 chr11 21935436 21935623 -128847930 + MER5A DNA MER1_type 5 189 0 1343 177 38 38 chr11 21936367 21936684 -128846869 - MER33 DNA MER1_type -7 317 1 208 178 0 67 chr11 21937072 21937117 -128846436 - L2 LINE L2 -18 3254 3213 735 314 78 61 chr11 21937138 21937692 -128845861 + L2 LINE L2 2736 3299 -14 1972 120 36 23 chr11 21937732 21938040 -128845513 - AluSq SINE Alu -1 312 1 291 325 13 0 chr11 21938130 21938207 -128845346 - MIR SINE MIR -177 85 8 1529 254 84 25 chr11 21938744 21939334 -128844219 - MLT1G LTR MaLR 0 590 1 345 330 49 71 chr11 21939625 21939892 -128843661 + L2 LINE L2 2962 3222 -50 228 245 0 0 chr11 21939997 21940050 -128843503 + CT-rich Low_complexity Low_complexity 1 53 0 31059 100 15 25 chr11 21940507 21946575 -128836978 - L1PA7 LINE L1 0 6469 364 1347 259 77 5 chr11 21946913 21947342 -128836211 - MLT1C LTR MaLR 0 467 8 449 329 34 19 chr11 21948028 21948235 -128835318 - MIR SINE MIR -6 256 47 187 349 0 15 chr11 21948655 21948721 -128834832 - MIR3 SINE MIR -133 75 11 921 193 17 73 chr11 21948759 21949059 -128834494 - L1MA9 LINE L1 -30 6282 6000 26 64 0 0 chr11 21949279 21949326 -128834227 + AT_rich Low_complexity Low_complexity 1 47 0 215 61 30 0 chr11 21950175 21950208 -128833345 + (TA)n Simple_repeat Simple_repeat 1 34 0 456 264 8 0 chr11 21950444 21950569 -128832984 - L1MB7 LINE L1 -9 6175 6050 3489 194 30 12 chr11 21950696 21951536 -128832017 - L1MB7 LINE L1 -126 6058 5204 219 189 0 0 chr11 21951786 21951839 -128831714 + CT-rich Low_complexity Low_complexity 3 55 0 712 337 91 38 chr11 21952044 21952642 -128830911 - L2 LINE L2 -188 3084 2458 2158 123 0 7 chr11 21952671 21952972 -128830581 - AluSx SINE Alu -1 311 13 292 274 210 16 chr11 21953060 21953184 -128830369 + MIR SINE MIR 111 258 -4 2980 223 36 76 chr11 21953604 21954947 -128828606 + L1MD2 LINE L1 4024 5261 -1098 1213 194 13 0 chr11 21954947 21955179 -128828374 - MER46A DNA MER2_type 0 236 2 2980 223 36 76 chr11 21955179 21955594 -128827959 + L1MD2 LINE L1 5261 5691 -668 568 214 180 89 chr11 21955591 21955885 -128827668 + L1MD2 LINE L1 5928 6194 -165 * 2580 116 3 11 chr11 21955885 21956263 -128827290 + THE1C LTR MaLR 1 375 0 9919 135 35 4 chr11 21956263 21957796 -128825757 + THE1C-int LTR MaLR 1 1580 0 2307 152 11 11 chr11 21957796 21958171 -128825382 + THE1C LTR MaLR 1 375 0 568 214 180 89 chr11 21958171 21958201 -128825352 + L1MD2 LINE L1 6193 6284 -75 367 176 44 11 chr11 21958247 21958338 -128825215 + L1MD2 LINE L1 6253 6346 -13 13725 193 15 29 chr11 21959215 21960648 -128822905 - L1MA5 LINE L1 -10 7352 5901 1907 157 141 5 chr11 21960648 21961023 -128822530 - MSTA LTR MaLR -2 426 1 13725 193 15 29 chr11 21961023 21962553 -128821000 - L1MA5 LINE L1 -1461 5901 4351 1766 181 0 3 chr11 21962553 21962852 -128820701 - AluJb SINE Alu -14 298 1 13725 193 15 29 chr11 21962852 21963029 -128820524 - L1MA5 LINE L1 -3011 4351 4173 2270 77 6 52 chr11 21963029 21963354 -128820199 - AluY SINE Alu -1 310 1 13725 193 15 29 chr11 21963354 21965093 -128818460 - L1MA5 LINE L1 -3189 4173 2552 1228 213 80 7 chr11 21965093 21965380 -128818173 - AluJb SINE Alu -4 308 1 13725 193 15 29 chr11 21965380 21965825 -128817728 - L1MA5 LINE L1 -4810 2552 2102 2065 275 59 29 chr11 21965836 21966501 -128817052 - L1MA5 LINE L1 -6524 685 1 228 143 0 0 chr11 21966590 21966632 -128816921 + (TAG)n Simple_repeat Simple_repeat 1 42 0 935 272 20 8 chr11 21966644 21966894 -128816659 - MIR SINE MIR -3 259 7 455 314 63 11 chr11 21967270 21967445 -128816108 + MIR SINE MIR 45 228 -34 522 244 16 0 chr11 21968106 21968233 -128815320 - MER94 DNA DNA 0 134 6 22 35 0 0 chr11 21968346 21968375 -128815178 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 21968788 21968809 -128814744 + AT_rich Low_complexity Low_complexity 1 21 0 690 98 25 0 chr11 21969535 21969657 -128813896 + (TCCCC)n Simple_repeat Simple_repeat 5 129 0 742 269 10 34 chr11 21969699 21969907 -128813646 - MER20 DNA MER1_type -15 204 2 335 210 74 37 chr11 21969967 21970048 -128813505 + MIR SINE MIR 71 154 -108 539 280 129 41 chr11 21970783 21971225 -128812328 + L2 LINE L2 2748 3270 -43 320 325 61 0 chr11 21971226 21971340 -128812213 + L2 LINE L2 3183 3303 -10 514 180 34 0 chr11 21971414 21971503 -128812050 - MIR SINE MIR -90 172 81 511 305 44 58 chr11 21971591 21971947 -128811606 + L1ME LINE L1 5455 5806 -364 233 218 0 18 chr11 21971973 21972028 -128811525 + (CA)n Simple_repeat Simple_repeat 2 55 0 1450 139 27 106 chr11 21973025 21973356 -128810197 + AluYb8 SINE Alu 1 305 -13 1818 167 7 0 chr11 21973652 21973958 -128809595 - AluSx SINE Alu -3 309 2 261 320 39 29 chr11 21974221 21974324 -128809229 - MIR SINE MIR -30 232 129 188 196 0 20 chr11 21974383 21974434 -128809119 + CT-rich Low_complexity Low_complexity 5 54 0 339 123 18 35 chr11 21975119 21975176 -128808377 - MLT1K LTR MaLR 0 588 533 * 1200 268 64 12 chr11 21975170 21975513 -128808040 - MER45C DNA AcHobo -5 948 588 192 77 0 0 chr11 21975912 21975938 -128807615 + (GGGAGA)n Simple_repeat Simple_repeat 5 30 0 190 345 30 60 chr11 21976892 21977060 -128806493 + L2 LINE L2 2755 2917 -397 339 278 11 0 chr11 21978590 21978680 -128804873 - L2 LINE L2 -6 3307 3217 * 1337 314 85 23 chr11 21978675 21979335 -128804218 + L2 LINE L2 1918 2618 -696 184 313 10 50 chr11 21979348 21979447 -128804106 - L2 LINE L2 -1839 1475 1381 419 346 13 6 chr11 21979780 21979939 -128803614 + MIR SINE MIR 7 166 -96 464 344 26 0 chr11 21979951 21980102 -128803451 + MIR SINE MIR 107 261 -1 23 0 0 0 chr11 21982902 21982925 -128800628 + AT_rich Low_complexity Low_complexity 1 23 0 820 248 187 37 chr11 21983152 21983531 -128800022 - MLT1J2 LTR MaLR -14 436 1 212 221 78 65 chr11 21984395 21984472 -128799081 - MIR3 SINE MIR -11 197 120 343 247 11 0 chr11 21984649 21984738 -128798815 - MER33 DNA MER1_type 0 363 274 474 119 0 0 chr11 21984742 21984809 -128798744 - MER33 DNA MER1_type -244 80 14 21 0 0 0 chr11 21984834 21984855 -128798698 + AT_rich Low_complexity Low_complexity 1 21 0 242 287 103 11 chr11 21985596 21985683 -128797870 + MIR SINE MIR 48 142 -66 742 188 109 20 chr11 21985794 21985996 -128797557 + MIR SINE MIR 13 232 -30 187 317 55 55 chr11 21986029 21986174 -128797379 + L2 LINE L2 2720 2864 -450 388 263 29 26 chr11 21986243 21986435 -128797118 + MIR SINE MIR 6 243 -19 222 384 154 15 chr11 21986458 21986724 -128796829 + L2 LINE L2 2960 3262 -10 217 214 171 0 chr11 21986736 21986806 -128796747 + MIR SINE MIR 166 247 -15 559 237 40 20 chr11 21987111 21987263 -128796290 - MIR SINE MIR 0 262 108 1474 167 4 0 chr11 21987457 21987696 -128795857 - Tigger3(Golem) DNA MER2_type -2 3027 2788 405 61 0 0 chr11 21987696 21987745 -128795808 - THE1A LTR MaLR 0 355 307 5874 143 55 12 chr11 21987847 21988013 -128795540 - Tigger3b DNA MER2_type -1869 1159 1002 2262 108 70 3 chr11 21988013 21988354 -128795199 - THE1B LTR MaLR 0 364 1 5874 143 55 12 chr11 21988354 21989268 -128794285 - Tigger3b DNA MER2_type -2026 1002 33 1375 196 7 7 chr11 21989381 21989661 -128793892 + AluJb SINE Alu 1 280 -32 231 36 0 0 chr11 21989664 21989692 -128793861 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 508 270 191 63 chr11 21989954 21990383 -128793170 + MLT1K LTR MaLR 4 487 -101 530 313 123 9 chr11 21993322 21993549 -128790004 - MIR SINE MIR -5 257 5 222 294 230 8 chr11 21994424 21994550 -128789003 - MIR3 SINE MIR -18 190 37 475 330 30 30 chr11 21994692 21994892 -128788661 - MIR SINE MIR -43 219 20 228 298 141 41 chr11 21994912 21995033 -128788520 + MER94 DNA DNA 2 134 0 214 281 33 99 chr11 21995078 21995199 -128788354 - L2 LINE L2 -54 3259 3147 259 390 119 0 chr11 21997342 21997460 -128786093 + L2 LINE L2 3123 3254 -18 624 265 63 36 chr11 21998085 21998308 -128785245 - LTR16C LTR ERVL -12 479 251 300 297 20 0 chr11 21998379 21998480 -128785073 - LTR16C LTR ERVL -381 110 8 221 333 43 0 chr11 21999608 21999677 -128783876 + MIR SINE MIR 23 94 -168 1231 180 101 110 chr11 21999681 22000098 -128783455 - MLT2D LTR ERVL -1 413 1 318 358 98 45 chr11 22000450 22000849 -128782704 - L2 LINE L2 -15 3257 2838 307 258 157 0 chr11 22001320 22001409 -128782144 - L2 LINE L2 0 3313 3211 1400 101 14 0 chr11 22002508 22002716 -128780837 - L1PA13 LINE L1 0 6163 5953 757 208 139 5 chr11 22002812 22003014 -128780539 - MIR SINE MIR -32 230 2 2716 275 173 65 chr11 22003072 22005314 -128778239 - HAL1 LINE L1 -20 2487 4 279 71 0 0 chr11 22005389 22005431 -128778122 + (TG)n Simple_repeat Simple_repeat 2 43 0 271 318 194 0 chr11 22005512 22005641 -128777912 + MIR SINE MIR 2 155 -107 192 77 0 0 chr11 22006068 22006094 -128777459 + (TG)n Simple_repeat Simple_repeat 2 27 0 204 277 77 39 chr11 22007809 22007964 -128775589 + L2 LINE L2 1931 2091 -1223 25 0 0 0 chr11 22008135 22008160 -128775393 + AT_rich Low_complexity Low_complexity 1 25 0 321 333 28 21 chr11 22008997 22009141 -128774412 + L2 LINE L2 2176 2320 -994 1047 184 9 5 chr11 22009146 22009358 -128774195 - L1 LINE L1 -3773 2373 2161 * 8624 199 87 29 chr11 22009356 22010664 -128772889 + L1MCa LINE L1 132 1363 -5063 231 36 0 0 chr11 22010664 22010692 -128772861 + (TC)n Simple_repeat Simple_repeat 1 28 0 8624 199 87 29 chr11 22010692 22013235 -128770318 + L1MCa LINE L1 1363 4208 -2218 40655 50 2 0 chr11 22013239 22018293 -128765260 + L1P LINE L1 7 5069 -1077 811 61 0 10 chr11 22018393 22018492 -128765061 + AluY SINE Alu 30 127 -184 192 260 20 0 chr11 22018576 22018626 -128764927 + L2 LINE L2 3185 3235 -78 24 0 0 0 chr11 22018950 22018974 -128764579 + AT_rich Low_complexity Low_complexity 1 24 0 222 299 103 0 chr11 22019191 22019288 -128764265 - MIR SINE MIR -35 227 121 3244 101 11 0 chr11 22021647 22022111 -128761442 + L1PA7 LINE L1 5682 6150 -4 549 350 60 0 chr11 22022574 22022791 -128760762 - MIR SINE MIR -15 247 18 267 344 21 10 chr11 22022932 22023028 -128760525 - MIR SINE MIR -76 132 36 531 255 155 35 chr11 22023105 22023305 -128760248 - MIR SINE MIR -21 241 18 409 200 0 77 chr11 22024414 22024544 -128759009 + L1MA9 LINE L1 6193 6312 0 35 0 0 0 chr11 22024827 22024862 -128758691 + AT_rich Low_complexity Low_complexity 1 35 0 228 225 0 0 chr11 22025034 22025074 -128758479 - 5S rRNA rRNA -81 40 1 22 0 0 0 chr11 22025152 22025174 -128758379 + AT_rich Low_complexity Low_complexity 1 22 0 223 229 14 43 chr11 22025693 22025763 -128757790 + GA-rich Low_complexity Low_complexity 5 72 0 423 0 0 0 chr11 22027314 22027361 -128756192 + (TG)n Simple_repeat Simple_repeat 2 48 0 994 262 35 0 chr11 22027449 22027731 -128755822 - MER58B DNA MER1_type -21 320 29 448 322 79 40 chr11 22027760 22027879 -128755674 - L2 LINE L2 -71 3242 3129 189 0 0 0 chr11 22027879 22027900 -128755653 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 448 322 79 40 chr11 22027900 22028370 -128755183 - L2 LINE L2 -184 3129 2620 6903 62 0 0 chr11 22028552 22029577 -128753976 - L1PA5 LINE L1 -2 6152 5119 465 298 58 12 chr11 22029665 22029836 -128753717 - MIR SINE MIR -63 199 21 595 261 73 33 chr11 22029859 22030129 -128753424 - MLT1H1 LTR MaLR 0 555 249 1202 256 0 18 chr11 22030570 22030851 -128752702 + AluJo SINE Alu 1 276 -36 302 269 13 0 chr11 22030869 22030947 -128752606 - L1MC4 LINE L1 -1350 6692 6614 2242 137 7 81 chr11 22031133 22031579 -128751974 + L1M1 LINE L1 5342 5754 -549 901 197 65 90 chr11 22031601 22031911 -128751642 - MLT1A1 LTR MaLR -59 306 5 284 347 132 5 chr11 22032028 22032247 -128751306 - MIR SINE MIR -12 250 4 231 269 29 67 chr11 22032273 22032377 -128751176 + MIR SINE MIR 17 116 -92 203 313 122 8 chr11 22032454 22032585 -128750968 + L2 LINE L2 3047 3192 -121 235 192 25 50 chr11 22033432 22033552 -128750001 + (TA)n Simple_repeat Simple_repeat 2 118 0 350 293 35 57 chr11 22033572 22033801 -128749752 - L1ME LINE L1 -297 5824 5601 190 260 40 0 chr11 22034197 22034247 -128749306 + L2 LINE L2 3216 3267 -5 252 311 131 0 chr11 22034282 22034404 -128749149 + MIR SINE MIR 125 262 0 413 259 82 63 chr11 22034657 22034912 -128748641 + L2 LINE L2 2612 2871 -443 241 366 12 0 chr11 22035011 22035093 -128748460 + L2 LINE L2 2969 3051 -221 767 130 5 38 chr11 22035350 22035535 -128748018 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 521 252 56 14 chr11 22035911 22036054 -128747499 + MIR SINE MIR 44 192 -70 282 226 118 10 chr11 22036056 22036158 -128747395 - MLT1G1 LTR MaLR 0 555 443 643 300 86 46 chr11 22036198 22036571 -128746982 - MLT1G1 LTR MaLR -206 389 2 11630 94 17 4 chr11 22036596 22037466 -128746087 + L1P3 LINE L1 8 913 -5548 2418 56 0 0 chr11 22037466 22037820 -128745733 + AluY SINE Alu 1 354 0 11630 94 17 4 chr11 22037820 22038629 -128744924 + L1P3 LINE L1 913 1710 -4751 885 123 27 0 chr11 22038638 22038784 -128744769 + L1P3 LINE L1 3210 3359 -3102 10419 104 9 10 chr11 22038784 22040449 -128743104 + L1P3 LINE L1 3795 5458 -1003 225 65 0 0 chr11 22041580 22041611 -128741942 + (TG)n Simple_repeat Simple_repeat 2 32 0 678 254 38 22 chr11 22042285 22042470 -128741083 + MIR SINE MIR 20 207 -55 273 333 92 29 chr11 22043254 22043428 -128740125 - MIR SINE MIR -3 259 75 554 41 14 0 chr11 22043509 22043582 -128739971 + (TA)n Simple_repeat Simple_repeat 2 75 0 2131 138 34 20 chr11 22043842 22044198 -128739355 - THE1B LTR MaLR 0 364 4 283 342 53 32 chr11 22044313 22044503 -128739050 - MIR SINE MIR -49 213 20 355 381 74 33 chr11 22044624 22044868 -128738685 - L2 LINE L2 -5 3267 3014 209 276 90 30 chr11 22045058 22045192 -128738361 - L2 LINE L2 -460 2854 2713 762 216 117 30 chr11 22045965 22046075 -128737478 - MIR SINE MIR 0 262 163 1638 196 45 25 chr11 22046075 22046433 -128737120 + MLT1A1 LTR MaLR 1 365 0 762 216 117 30 chr11 22046433 22046553 -128737000 - MIR SINE MIR -99 163 12 315 342 76 0 chr11 22046734 22046892 -128736661 - MIR SINE MIR 0 262 93 272 264 73 27 chr11 22047083 22047193 -128736360 - L3b LINE CR1 -212 1371 1257 653 163 0 0 chr11 22047205 22047303 -128736250 + AluSg/x SINE Alu 153 250 -60 260 0 57 0 chr11 22047310 22047345 -128736208 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 194 152 0 65 chr11 22047686 22047732 -128735821 - L2 LINE L2 -7 3265 3223 1273 174 69 7 chr11 22047780 22048056 -128735497 - MSTC LTR MaLR 0 428 136 2100 146 34 48 chr11 22048056 22048474 -128735079 + MSTA LTR MaLR 17 428 0 625 129 20 0 chr11 22048489 22048590 -128734963 - MSTC LTR MaLR -324 104 2 572 337 0 5 chr11 22048592 22048782 -128734771 + MIR SINE MIR 74 262 0 272 304 0 14 chr11 22048800 22048869 -128734684 - L2 LINE L2 -44 3228 3161 226 299 174 33 chr11 22048871 22049112 -128734441 - L2 LINE L2 -404 2910 2636 2137 120 3 0 chr11 22049116 22049408 -128734145 - AluSx SINE Alu -19 293 1 198 252 70 19 chr11 22049532 22049615 -128733938 - MIR SINE MIR -118 90 7 227 175 0 53 chr11 22049831 22049888 -128733665 - L1ME4a LINE L1 -100 6021 5968 346 251 22 78 chr11 22050606 22050837 -128732716 - L1ME4a LINE L1 -287 5834 5617 196 404 10 0 chr11 22051285 22051389 -128732164 + MIR3 SINE MIR 87 191 -17 241 313 183 9 chr11 22052112 22052227 -128731326 + L2 LINE L2 3175 3309 -4 638 255 66 33 chr11 22052310 22052522 -128731031 + MIR SINE MIR 3 221 -41 252 86 0 0 chr11 22052631 22052666 -128730887 + (TG)n Simple_repeat Simple_repeat 2 36 0 1924 150 0 45 chr11 22052676 22052989 -128730564 - AluSx SINE Alu -13 299 1 21 0 0 0 chr11 22052989 22053010 -128730543 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr11 22103069 22103096 -128680457 + (T)n Simple_repeat Simple_repeat 1 27 0 225 207 0 17 chr11 22103096 22103154 -128680399 - L1ME LINE L1 -435 5729 5673 * 1360 279 65 27 chr11 22103150 22103824 -128679729 - L1MEc LINE L1 -4159 2237 1538 307 173 37 43 chr11 22103840 22103963 -128679590 - L1M4b LINE L1 -3952 3005 2882 2544 85 12 75 chr11 22104022 22104201 -128679352 + THE1C LTR MaLR 1 143 -232 1323 47 24 0 chr11 22104201 22104371 -128679182 + L1PA4 LINE L1 5981 6154 -1 2544 85 12 75 chr11 22104371 22104591 -128678962 + THE1C LTR MaLR 143 375 0 10173 127 32 7 chr11 22104591 22106133 -128677420 + THE1C-int LTR MaLR 1 1580 0 2483 118 30 3 chr11 22106133 22106498 -128677055 + THE1C LTR MaLR 1 375 0 310 244 118 17 chr11 22106505 22106624 -128676929 - L1MA9 LINE L1 -88 6224 6094 313 277 24 80 chr11 22106879 22107092 -128676461 - L1M4b LINE L1 -4436 2702 2502 3848 232 49 31 chr11 22107393 22108984 -128674569 - L1M4b LINE L1 -4640 2319 702 835 319 21 12 chr11 22109256 22109592 -128673961 - L1MEc LINE L1 -5977 419 81 30 45 0 0 chr11 22109785 22109829 -128673724 + AT_rich Low_complexity Low_complexity 1 44 0 282 303 101 53 chr11 22111052 22111240 -128672313 - L2 LINE L2 0 3313 3117 318 200 27 0 chr11 22111273 22111348 -128672205 - MER58 DNA MER1_type 0 2420 2344 26 30 0 0 chr11 22111382 22111415 -128672138 + AT_rich Low_complexity Low_complexity 1 33 0 208 283 0 0 chr11 22111561 22111621 -128671932 + CT-rich Low_complexity Low_complexity 2 61 0 219 381 67 8 chr11 22112573 22112707 -128670846 + L3b LINE CR1 1417 1558 -25 372 306 99 22 chr11 22113268 22113490 -128670063 - MIR SINE MIR -16 246 8 216 343 57 29 chr11 22113532 22113637 -128669916 - MIR SINE MIR -78 130 23 231 114 0 0 chr11 22113658 22113693 -128669860 + (TA)n Simple_repeat Simple_repeat 1 35 0 409 286 97 9 chr11 22114336 22114635 -128668918 - MLT1J LTR MaLR 0 409 68 1465 16 0 11 chr11 22114745 22114927 -128668626 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 349 186 86 0 chr11 22115008 22115078 -128668475 - MER96 DNA MER1_type? -93 82 7 1348 220 111 30 chr11 22116114 22116546 -128667007 + MLT1C LTR MaLR 1 467 0 2413 90 0 0 chr11 22117183 22117493 -128666060 - AluY SINE Alu -1 310 1 1789 169 179 15 chr11 22117507 22117662 -128665891 + MLT1C LTR MaLR 3 131 -336 351 0 0 0 chr11 22117662 22117701 -128665852 + (CA)n Simple_repeat Simple_repeat 2 40 0 279 0 0 0 chr11 22117700 22117731 -128665822 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 1789 169 179 15 chr11 22117701 22117971 -128665582 + MLT1C LTR MaLR 131 463 -4 190 324 176 0 chr11 22119089 22119191 -128664362 + L2 LINE L2 3147 3266 -6 219 254 0 0 chr11 22119258 22119313 -128664240 - MIR SINE MIR -8 254 200 1786 167 10 13 chr11 22119401 22119713 -128663840 + AluJo SINE Alu 2 312 0 339 85 0 0 chr11 22119739 22119786 -128663767 + (GA)n Simple_repeat Simple_repeat 2 48 0 390 370 65 4 chr11 22120042 22120288 -128663265 + L2 LINE L2 2572 2832 -482 966 234 18 14 chr11 22120620 22120842 -128662711 - MER58A DNA MER1_type 0 224 2 248 336 58 0 chr11 22120842 22120946 -128662607 + L2 LINE L2 3195 3304 -9 224 353 38 23 chr11 22121675 22121837 -128661716 + MIR SINE MIR 16 180 -53 22 0 0 0 chr11 22121972 22121994 -128661559 + AT_rich Low_complexity Low_complexity 1 22 0 343 328 35 0 chr11 22122267 22122383 -128661170 - MIR3 SINE MIR -17 191 72 475 245 46 87 chr11 22123088 22123329 -128660224 - MLT1K LTR MaLR -36 552 322 42 36 0 0 chr11 22123507 22123563 -128659990 + AT_rich Low_complexity Low_complexity 1 56 0 352 158 51 62 chr11 22123563 22123740 -128659813 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 390 308 58 12 chr11 22123899 22124071 -128659482 + MIR SINE MIR 69 248 -14 708 305 43 4 chr11 22124119 22124352 -128659201 - L2 LINE L2 -176 3137 2896 2101 129 6 3 chr11 22124364 22124675 -128658878 + AluSp SINE Alu 1 312 -1 364 299 59 48 chr11 22125524 22125711 -128657842 + MIR SINE MIR 64 252 -10 192 368 66 29 chr11 22125922 22126058 -128657495 - L2 LINE L2 -457 2857 2717 309 367 47 7 chr11 22127683 22127833 -128655720 - L2 LINE L2 0 3272 3117 1391 211 54 90 chr11 22127902 22128381 -128655172 + MLT1C LTR MaLR 6 467 0 271 348 36 0 chr11 22128435 22128547 -128655006 - L2 LINE L2 -225 3047 2932 1166 323 55 23 chr11 22128719 22129465 -128654088 + L2 LINE L2 2553 3313 0 430 200 219 32 chr11 22130364 22130519 -128653034 - MIR SINE MIR -71 191 8 318 280 64 45 chr11 22131050 22131207 -128652346 - MIR SINE MIR -48 214 55 208 323 0 7 chr11 22131345 22131430 -128652123 + CT-rich Low_complexity Low_complexity 3 135 0 240 309 65 32 chr11 22131536 22131659 -128651894 + MIR SINE MIR 56 182 -80 672 303 40 9 chr11 22132397 22132625 -128650928 - MIR SINE MIR -9 253 19 855 267 43 93 chr11 22132944 22133364 -128650189 + L2 LINE L2 2915 3313 0 624 261 24 81 chr11 22133380 22133591 -128649962 - MER20 DNA MER1_type -5 214 16 192 310 17 17 chr11 22133635 22133693 -128649860 + L2 LINE L2 3241 3298 -15 5942 148 13 4 chr11 22133702 22135409 -128648144 - L1PB2 LINE L1 0 6151 4430 1223 123 5 0 chr11 22135432 22135619 -128647934 - AluSg/x SINE Alu -4 306 119 252 0 0 0 chr11 22135734 22135762 -128647791 + (A)n Simple_repeat Simple_repeat 1 28 0 439 222 154 25 chr11 22135814 22135976 -128647577 - MER112 DNA MER1_type -7 253 71 320 333 25 98 chr11 22136299 22136612 -128646941 + L2 LINE L2 2952 3241 -31 449 320 65 8 chr11 22136612 22136848 -128646705 + MIR SINE MIR 2 248 -14 817 200 12 30 chr11 22137228 22137393 -128646160 - MER20 DNA MER1_type 0 219 58 24 53 0 0 chr11 22137788 22137826 -128645727 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr11 22138372 22138398 -128645155 + AT_rich Low_complexity Low_complexity 1 26 0 333 0 0 0 chr11 22138585 22138622 -128644931 + (CA)n Simple_repeat Simple_repeat 2 38 0 246 273 80 11 chr11 22138800 22138888 -128644665 + L2 LINE L2 3184 3277 -36 466 280 60 55 chr11 22138926 22139165 -128644388 - MIR SINE MIR 0 262 22 273 325 87 16 chr11 22139809 22139935 -128643618 + MIR SINE MIR 29 163 -99 256 296 62 0 chr11 22140168 22140249 -128643304 - MIR SINE MIR -11 251 166 180 0 0 0 chr11 22140681 22140701 -128642852 + (T)n Simple_repeat Simple_repeat 1 20 0 336 339 54 15 chr11 22141222 22141352 -128642201 - L2 LINE L2 0 3272 3138 361 277 58 16 chr11 22141510 22141698 -128641855 + L1ME LINE L1 5577 5772 -349 251 268 125 27 chr11 22141919 22142031 -128641522 - MIR SINE MIR -2 260 138 250 277 64 21 chr11 22143956 22144050 -128639503 - MER5A DNA MER1_type -45 144 47 2085 205 121 11 chr11 22145504 22145977 -128637576 - MLT1F1 LTR MaLR -42 525 1 414 39 0 0 chr11 22146198 22146250 -128637303 + (TG)n Simple_repeat Simple_repeat 1 52 0 8669 214 16 8 chr11 22146365 22149204 -128634349 - L1PA16 LINE L1 -6 6160 3304 881 201 12 18 chr11 22149210 22149379 -128634174 - MER20 DNA MER1_type 0 219 52 335 122 0 0 chr11 22149379 22149428 -128634125 - L1MA6 LINE L1 -108 6192 6144 339 180 16 0 chr11 22149466 22149527 -128634026 - MER20 DNA MER1_type -152 67 6 243 88 0 0 chr11 22149568 22149602 -128633951 + (TA)n Simple_repeat Simple_repeat 2 35 0 1829 135 0 0 chr11 22150033 22150299 -128633254 - AluSx SINE Alu -12 300 35 227 338 0 14 chr11 22152348 22152419 -128631134 - MIR SINE MIR -173 89 20 594 283 26 44 chr11 22152615 22152841 -128630712 + MIR SINE MIR 13 234 -28 216 343 0 0 chr11 22152877 22152950 -128630603 - MIR SINE MIR -127 135 63 223 313 219 10 chr11 22153478 22153574 -128629979 + MIR SINE MIR 32 147 -61 242 335 64 35 chr11 22154760 22154981 -128628572 + L2 LINE L2 2736 2959 -313 288 120 0 0 chr11 22154999 22155049 -128628504 + (TA)n Simple_repeat Simple_repeat 1 50 0 538 162 105 9 chr11 22155144 22155249 -128628304 - 5S rRNA rRNA -6 115 1 1262 290 50 40 chr11 22155255 22155773 -128627780 + L2 LINE L2 2381 2903 -411 3595 23 0 5 chr11 22155784 22156217 -128627336 - L1PA3 LINE L1 0 6155 5725 26 30 0 0 chr11 22156256 22156289 -128627264 + AT_rich Low_complexity Low_complexity 1 33 0 769 318 120 0 chr11 22156323 22156647 -128626906 + L2 LINE L2 2942 3304 -9 334 311 154 39 chr11 22156798 22157103 -128626450 + L2 LINE L2 2455 2794 -520 1069 269 25 45 chr11 22158427 22158825 -128624728 + L2 LINE L2 2924 3313 0 235 360 52 15 chr11 22158827 22158963 -128624590 - MIR SINE MIR -109 153 13 443 299 60 50 chr11 22159223 22159424 -128624129 - MIR SINE MIR -40 222 20 211 179 71 71 chr11 22159616 22159672 -128623881 + MIR SINE MIR 66 121 -141 280 245 78 0 chr11 22160518 22160610 -128622943 - MIR SINE MIR -63 145 54 2163 253 59 8 chr11 22160934 22161594 -128621959 - L1ME3A LINE L1 -181 5989 5296 269 50 0 25 chr11 22161695 22161735 -128621818 + (TAA)n Simple_repeat Simple_repeat 3 41 0 2531 263 157 102 chr11 22161738 22163000 -128620553 - HAL1 LINE L1 -185 2322 765 543 202 101 31 chr11 22163000 22163129 -128620424 - AluJb SINE Alu -25 287 150 2531 263 157 102 chr11 22163129 22163937 -128619616 - HAL1 LINE L1 -1742 765 3 210 379 32 41 chr11 22164512 22164731 -128618822 + L3 LINE CR1 607 823 -754 559 330 16 47 chr11 22165416 22165674 -128617879 - MIR SINE MIR -12 250 1 261 209 0 0 chr11 22165722 22165789 -128617764 + (TA)n Simple_repeat Simple_repeat 1 67 0 325 183 84 0 chr11 22168703 22168774 -128614779 - L1ME4a LINE L1 -16 6105 6029 22 0 0 0 chr11 22168931 22168953 -128614600 + AT_rich Low_complexity Low_complexity 1 22 0 1050 207 115 72 chr11 22169015 22169363 -128614190 + MLT1A1 LTR MaLR 1 363 -2 37 23 0 0 chr11 22169368 22169412 -128614141 + AT_rich Low_complexity Low_complexity 1 44 0 211 372 0 12 chr11 22170777 22170863 -128612690 + MIR3 SINE MIR 83 167 -41 771 286 128 8 chr11 22170878 22171112 -128612441 - MIR SINE MIR 0 262 1 233 346 91 35 chr11 22171500 22171754 -128611799 - L3 LINE CR1 -7 1570 1303 391 300 65 35 chr11 22171785 22171955 -128611598 - L3 LINE CR1 -742 835 661 377 324 126 0 chr11 22173100 22173282 -128610271 + MIR SINE MIR 29 233 -29 516 229 35 28 chr11 22174689 22174833 -128608720 - MLT1K LTR MaLR -23 565 421 12052 171 76 4 chr11 22175051 22177338 -128606215 - L1PBa LINE L1 -4412 2451 1 293 265 0 0 chr11 22177669 22177737 -128605816 - MER58B DNA MER1_type -16 325 258 2365 93 0 3 chr11 22177841 22178153 -128605400 + AluY SINE Alu 1 311 0 990 98 0 0 chr11 22178316 22178449 -128605104 - AluSq/x SINE Alu -180 133 1 258 81 0 0 chr11 22178452 22178489 -128605064 + (TTG)n Simple_repeat Simple_repeat 3 39 0 9605 211 33 17 chr11 22178489 22181003 -128602550 - L1 LINE L1 -1760 4386 1843 1534 222 47 33 chr11 22181285 22181709 -128601844 - L1ME2 LINE L1 -10 6154 5725 289 137 0 39 chr11 22181825 22181876 -128601677 - MLT1K LTR MaLR -531 57 9 243 305 137 0 chr11 22182558 22182653 -128600900 - MIR3 SINE MIR -11 197 90 219 299 90 42 chr11 22184490 22184657 -128598896 - MIR SINE MIR 0 262 88 1882 145 97 0 chr11 22184775 22185126 -128598427 - L1MA4 LINE L1 -2 6298 5914 2038 147 0 0 chr11 22185215 22185521 -128598032 + AluJb SINE Alu 1 306 -6 344 323 75 38 chr11 22186129 22186315 -128597238 - MER117 DNA MER1_type -1 196 4 1915 22 0 0 chr11 22186607 22186836 -128596717 - L1PA3 LINE L1 -851 5295 5067 7045 34 0 0 chr11 22186837 22187673 -128595880 + L1PA3 LINE L1 5317 6152 -3 33 0 0 0 chr11 22187673 22187706 -128595847 + AT_rich Low_complexity Low_complexity 1 33 0 237 228 0 0 chr11 22187965 22188022 -128595531 + GA-rich Low_complexity Low_complexity 2 58 0 28 79 0 0 chr11 22188037 22188100 -128595453 + AT_rich Low_complexity Low_complexity 1 63 0 240 217 33 0 chr11 22188480 22188540 -128595013 + GA-rich Low_complexity Low_complexity 2 63 0 422 311 76 42 chr11 22189076 22189314 -128594239 + MIR SINE MIR 3 248 -14 646 225 17 29 chr11 22189634 22189807 -128593746 - MER96B DNA MER1_type? -5 412 242 439 319 100 2 chr11 22190425 22190645 -128592908 - MIR SINE MIR 0 262 25 184 339 40 32 chr11 22191585 22191709 -128591844 - MIR SINE MIR -117 145 21 435 254 153 16 chr11 22194983 22195172 -128588381 - MIR SINE MIR -43 219 5 218 271 0 14 chr11 22195248 22195318 -128588235 + CT-rich Low_complexity Low_complexity 2 70 0 408 244 71 24 chr11 22196027 22196154 -128587399 - MIR SINE MIR -5 257 125 269 336 47 28 chr11 22196187 22196294 -128587259 - L2 LINE L2 -1 3271 3163 724 324 68 21 chr11 22196718 22197054 -128586499 + MLT1I LTR MaLR 44 395 -14 192 125 0 0 chr11 22198121 22198153 -128585400 + (TG)n Simple_repeat Simple_repeat 2 33 0 340 321 105 34 chr11 22198366 22199253 -128584300 + HAL1 LINE L1 9 1085 -1422 2036 207 17 67 chr11 22199269 22199748 -128583805 + L1M4c LINE L1 32 486 -5898 * 5441 207 37 46 chr11 22199743 22200175 -128583378 + L1M4c LINE L1 1248 1682 -4700 243 0 0 0 chr11 22200175 22200202 -128583351 + (TG)n Simple_repeat Simple_repeat 2 28 0 5441 207 37 46 chr11 22200202 22201164 -128582389 + L1M4c LINE L1 1682 2651 -3731 2097 94 11 17 chr11 22201164 22201451 -128582102 + AluSc SINE Alu 3 287 -22 5441 207 37 46 chr11 22201451 22202416 -128581137 + L1M4c LINE L1 2651 3587 -2795 2111 133 0 0 chr11 22202416 22202725 -128580828 + AluSx SINE Alu 1 309 -3 5441 207 37 46 chr11 22202725 22203194 -128580359 + L1M4c LINE L1 3587 4059 -2323 258 77 0 0 chr11 22203194 22203233 -128580320 + L1M4c LINE L1 4793 4831 -1551 390 212 17 59 chr11 22203251 22203369 -128580184 + L1M4c LINE L1 4807 4919 -1463 1515 223 168 0 chr11 22203446 22203840 -128579713 + MLT1D LTR MaLR 46 505 0 484 220 11 44 chr11 22203918 22204100 -128579453 + HAL1 LINE L1 2240 2415 -92 240 245 10 122 chr11 22204378 22204476 -128579077 + L2 LINE L2 3186 3272 0 1871 287 25 33 chr11 22204790 22205403 -128578150 - MLT2E LTR ERVL 0 628 21 619 183 25 17 chr11 22205664 22205784 -128577769 + BC200 scRNA scRNA 1 121 -79 237 250 22 43 chr11 22207970 22208062 -128575491 + MIR SINE MIR 102 191 -71 606 284 36 75 chr11 22209250 22209581 -128573972 + L2 LINE L2 2996 3313 0 435 333 43 24 chr11 22209947 22210157 -128573396 + MIR SINE MIR 31 244 -18 553 343 28 12 chr11 22210547 22210801 -128572752 - MER90 LTR ERV1 0 614 357 10372 205 48 46 chr11 22210805 22211742 -128571811 - L1MA5 LINE L1 -7 6995 6061 2170 117 3 0 chr11 22211742 22212051 -128571502 - AluSp SINE Alu -2 311 2 10372 205 48 46 chr11 22212051 22214041 -128569512 - L1MA5 LINE L1 -941 6061 4076 2015 143 7 0 chr11 22214041 22214348 -128569205 - AluSc SINE Alu 0 309 1 10372 205 48 46 chr11 22214348 22215364 -128568189 - L1MA5 LINE L1 -2926 4076 3063 2193 103 3 0 chr11 22215364 22215654 -128567899 - AluSp SINE Alu -22 291 1 10372 205 48 46 chr11 22215654 22216254 -128567299 - L1MA5 LINE L1 -3939 3063 2414 186 71 0 0 chr11 22216254 22216282 -128567271 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 10372 205 48 46 chr11 22216282 22216806 -128566747 - L1MA5 LINE L1 -4588 2414 1892 182 415 24 0 chr11 22218139 22218221 -128565332 - L2 LINE L2 -213 3059 2976 262 282 88 39 chr11 22218675 22218856 -128564697 - L2 LINE L2 -1280 2034 1845 468 0 0 0 chr11 22219326 22219378 -128564175 + (TG)n Simple_repeat Simple_repeat 2 53 0 21 71 0 0 chr11 22219685 22219727 -128563826 + AT_rich Low_complexity Low_complexity 1 42 0 213 324 0 0 chr11 22220597 22220671 -128562882 - L2 LINE L2 0 3313 3240 198 0 0 0 chr11 22221041 22221063 -128562490 + (T)n Simple_repeat Simple_repeat 1 22 0 1512 194 45 45 chr11 22221082 22221478 -128562075 - MSTD LTR MaLR 0 396 1 1472 114 155 42 chr11 22221715 22221979 -128561574 + AluSx SINE Alu 14 307 -5 257 275 66 18 chr11 22221988 22222155 -128561398 - L1ME4a LINE L1 0 6121 5947 232 298 136 25 chr11 22222413 22222611 -128560942 - L1ME4a LINE L1 -439 5682 5463 1304 184 36 0 chr11 22222686 22222963 -128560590 - L1MA1 LINE L1 -1 6301 6015 13307 152 72 35 chr11 22222963 22223411 -128560142 - L1M1 LINE L1 -4102 3463 3033 2102 104 9 35 chr11 22223411 22223728 -128559825 - AluSp SINE Alu -4 309 1 13307 152 72 35 chr11 22223728 22226390 -128557163 - L1M1 LINE L1 -4532 3033 13 28 0 0 0 chr11 22226543 22226571 -128556982 + AT_rich Low_complexity Low_complexity 1 28 0 535 256 19 0 chr11 22226646 22226663 -128556890 - L1MA10 LINE L1 -3 6331 6315 2343 257 50 29 chr11 22226663 22228108 -128555445 - L1ME1 LINE L1 -12 6223 4751 2462 55 10 0 chr11 22229004 22229312 -128554241 + AluY SINE Alu 1 311 0 23 0 0 0 chr11 22229715 22229738 -128553815 + AT_rich Low_complexity Low_complexity 1 23 0 500 242 54 13 chr11 22230354 22230503 -128553050 - L1ME1 LINE L1 -6228 168 14 * 1290 284 58 13 chr11 22230476 22231163 -128552390 - L1MDa LINE L1 -2688 3527 2810 1269 233 39 102 chr11 22231195 22232013 -128551540 - L1MDa LINE L1 -3490 2916 2185 4290 12 0 20 chr11 22232013 22232521 -128551032 - L1PA2 LINE L1 0 6155 5658 1269 233 39 102 chr11 22232521 22232689 -128550864 - L1MDa LINE L1 -4221 2185 2008 1587 216 36 31 chr11 22232694 22233051 -128550502 - MLT1A2 LTR MaLR -15 359 1 561 294 78 10 chr11 22233052 22233351 -128550202 - L1MDa LINE L1 -4522 1884 1651 243 125 0 0 chr11 22233392 22233432 -128550121 + (T)n Simple_repeat Simple_repeat 1 40 0 1638 182 6 46 chr11 22233565 22233889 -128549664 - AluJo SINE Alu 0 312 2 246 267 9 88 chr11 22233894 22234111 -128549442 - L1MDa LINE L1 -4910 1498 1299 1932 107 3 27 chr11 22234133 22234431 -128549122 - AluSx SINE Alu -2 310 20 234 283 118 13 chr11 22234447 22234599 -128548954 - L1MDa LINE L1 -4987 1422 1255 243 253 27 0 chr11 22234682 22234757 -128548796 - L1MDa LINE L1 -6207 380 304 220 104 42 104 chr11 22234880 22234928 -128548625 - L2 LINE L2 -3 3310 3266 377 330 179 29 chr11 22235721 22236469 -128547084 - L2 LINE L2 -837 2477 1618 1174 262 33 24 chr11 22236483 22236906 -128546647 + L1ME4a LINE L1 5499 5925 -196 238 282 43 52 chr11 22237268 22237392 -128546161 - MIR SINE MIR -66 142 13 190 246 14 58 chr11 22239531 22239600 -128543953 + MIR SINE MIR 28 93 -169 227 266 16 0 chr11 22239638 22239702 -128543851 - MER103 DNA DNA -81 85 21 829 282 31 19 chr11 22239838 22240097 -128543456 - MIR SINE MIR 0 262 1 435 351 96 49 chr11 22292199 22292731 -128490822 - L2 LINE L2 -18 3295 2743 24 0 0 0 chr11 22293331 22293355 -128490198 + AT_rich Low_complexity Low_complexity 1 24 0 453 316 84 5 chr11 22293889 22294079 -128489474 - Charlie8 DNA MER1_type -2207 210 6 1471 211 148 34 chr11 22294945 22295385 -128488168 - MLT1D LTR MaLR -7 498 9 1171 177 50 71 chr11 22295722 22295810 -128487743 + AluJo SINE Alu 36 124 -188 282 56 0 0 chr11 22295810 22295846 -128487707 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 1171 177 50 71 chr11 22295846 22296040 -128487513 + AluJo SINE Alu 124 312 0 234 330 43 0 chr11 22296554 22296669 -128486884 - MIR SINE MIR -27 235 116 23 0 0 0 chr11 22297417 22297440 -128486113 + AT_rich Low_complexity Low_complexity 1 23 0 368 316 17 22 chr11 22298398 22298565 -128484988 + MIR SINE MIR 13 180 -28 770 222 30 6 chr11 22298585 22298752 -128484801 + L1PA16 LINE L1 5961 6131 -35 4185 196 33 32 chr11 22299474 22300451 -128483102 + L1MA9 LINE L1 5297 6274 -38 23 33 0 0 chr11 22301019 22301049 -128482504 + AT_rich Low_complexity Low_complexity 1 30 0 193 273 101 50 chr11 22301109 22301161 -128482392 - L2 LINE L2 -15 3298 3250 1450 110 97 0 chr11 22301161 22301398 -128482155 + L1PA13 LINE L1 5899 6158 -5 193 273 101 50 chr11 22301398 22301444 -128482109 - L2 LINE L2 -63 3250 3195 271 297 0 11 chr11 22302425 22302516 -128481037 + (TTCA)n Simple_repeat Simple_repeat 1 90 0 423 296 29 48 chr11 22302635 22302841 -128480712 - MIR SINE MIR -10 252 51 387 264 126 43 chr11 22303010 22303326 -128480227 - LTR33A LTR ERVL -11 512 127 1682 194 31 25 chr11 22303674 22304034 -128479519 + MLT1A1 LTR MaLR 1 362 -3 771 183 35 0 chr11 22305555 22305697 -128477856 + FRAM SINE Alu 17 163 -13 894 341 68 11 chr11 22306029 22306398 -128477155 - L2 LINE L2 -1 3312 2923 346 331 12 6 chr11 22306445 22306614 -128476939 + L1M4 LINE L1 2653 2822 -3324 2184 116 0 0 chr11 22306650 22306944 -128476609 + AluSc SINE Alu 1 294 -15 21 0 0 0 chr11 22306986 22307007 -128476546 + AT_rich Low_complexity Low_complexity 1 21 0 2102 136 49 9 chr11 22307121 22307466 -128476087 + THE1B LTR MaLR 1 359 -5 9950 112 31 43 chr11 22307475 22309075 -128474478 + THE1B-int LTR MaLR 1 1580 0 2243 132 28 11 chr11 22309076 22309433 -128474120 + THE1B LTR MaLR 2 364 0 500 291 77 64 chr11 22309447 22309773 -128473780 + L1PB2 LINE L1 3067 3396 -2750 6359 181 14 9 chr11 22309858 22312431 -128471122 + L1PB2 LINE L1 3516 6149 -2 454 324 34 8 chr11 22312451 22312689 -128470864 + L1M4 LINE L1 3871 4114 -2032 2901 50 14 0 chr11 22312690 22313054 -128470499 - L1PA3 LINE L1 0 6155 5787 13289 48 7 3 chr11 22313154 22315264 -128468289 - L1PA5 LINE L1 -329 5825 3706 235 277 84 0 chr11 22315412 22315531 -128468022 - L1M4 LINE L1 -3313 2833 2705 567 265 77 18 chr11 22315711 22315881 -128467672 - MER20 DNA MER1_type -39 180 1 396 277 31 8 chr11 22316571 22316701 -128466852 - MER117 DNA MER1_type -29 168 36 1778 166 0 7 chr11 22319761 22320044 -128463509 + AluJb SINE Alu 1 281 -31 286 211 26 0 chr11 22320048 22320124 -128463429 + (TA)n Simple_repeat Simple_repeat 2 79 0 1116 270 87 23 chr11 22320168 22320817 -128462736 - L1ME3A LINE L1 -213 5949 5254 485 262 90 57 chr11 22320983 22321495 -128462058 - L1ME3A LINE L1 -1131 5015 4487 26 30 0 0 chr11 22321630 22321663 -128461890 + AT_rich Low_complexity Low_complexity 1 33 0 1261 195 100 0 chr11 22321726 22321967 -128461586 + AluJo SINE Alu 1 265 -47 2102 153 0 0 chr11 22322072 22322380 -128461173 - AluSx SINE Alu -4 308 1 6062 53 8 0 chr11 22322593 22323360 -128460193 + L1PA5 LINE L1 5381 6153 -1 507 247 49 138 chr11 22323385 22323724 -128459829 + L1M4 LINE L1 3718 4009 -2137 1875 122 0 46 chr11 22323724 22324028 -128459525 + AluSx SINE Alu 1 290 -22 507 247 49 138 chr11 22324028 22324138 -128459415 + L1M4 LINE L1 4009 4127 -2019 21 36 0 0 chr11 22324298 22324326 -128459227 + AT_rich Low_complexity Low_complexity 1 28 0 615 227 76 35 chr11 22325215 22325387 -128458166 + MER97b DNA MER1_type? 1 179 -874 2169 123 0 0 chr11 22325583 22325883 -128457670 - AluSg SINE Alu -10 300 1 183 303 103 71 chr11 22326186 22326341 -128457212 + MIR SINE MIR 48 207 -55 919 236 241 30 chr11 22328379 22328840 -128454713 + LTR50 LTR ERVL 43 600 -195 302 209 15 0 chr11 22328917 22328984 -128454569 + LTR50 LTR ERVL 710 777 -18 399 333 15 7 chr11 22329409 22329544 -128454009 + L2 LINE L2 2922 3057 -256 846 104 22 0 chr11 22331810 22331945 -128451608 - L1PA14 LINE L1 0 6161 6024 487 299 6 35 chr11 22332168 22332342 -128451211 + MER5B DNA MER1_type 1 169 -9 1163 305 109 41 chr11 22332815 22333023 -128450530 + L2 LINE L2 1699 1891 -1423 1345 245 51 74 chr11 22333023 22333575 -128449978 + MLT1F LTR MaLR 1 539 -3 1163 305 109 41 chr11 22333575 22334101 -128449452 + L2 LINE L2 1891 2483 -831 315 331 169 0 chr11 22334141 22334277 -128449276 + MER5A DNA MER1_type 31 189 0 196 279 0 116 chr11 22334671 22334757 -128448796 - L2 LINE L2 -3 3269 3194 239 391 51 70 chr11 22335254 22335510 -128448043 + L2 LINE L2 3007 3257 -15 396 204 23 0 chr11 22335763 22335851 -128447702 + L1MA9 LINE L1 6218 6307 -5 445 91 13 13 chr11 22336091 22336168 -128447385 + (TA)n Simple_repeat Simple_repeat 2 78 0 1999 149 0 3 chr11 22336252 22336553 -128447000 + AluSx SINE Alu 3 302 -10 267 245 53 21 chr11 22336654 22336748 -128446805 - L1ME LINE L1 -338 5783 5687 216 283 0 0 chr11 22337194 22337240 -128446313 + L2 LINE L2 3218 3263 -9 195 313 16 0 chr11 22337251 22337315 -128446238 + MIR SINE MIR 74 138 -124 212 320 105 26 chr11 22337659 22337812 -128445741 - L3 LINE CR1 -32 1545 1381 220 156 0 0 chr11 22338140 22338172 -128445381 + MER91B DNA MER1_type 30 61 -129 239 200 140 20 chr11 22338201 22338301 -128445252 - MER112 DNA MER1_type -43 217 106 810 294 12 20 chr11 22338341 22338586 -128444967 + MIR SINE MIR 1 243 -19 243 188 116 29 chr11 22338665 22338734 -128444819 - MER112 DNA MER1_type -185 75 1 200 297 5 108 chr11 22339229 22339414 -128444139 + MIR SINE MIR 49 214 -48 21 0 0 0 chr11 22339587 22339608 -128443945 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 22339957 22339985 -128443568 + AT_rich Low_complexity Low_complexity 1 28 0 848 251 54 34 chr11 22340092 22340600 -128442953 - MER76 LTR ERV -66 622 41 209 33 33 0 chr11 22341965 22341995 -128441558 + (TC)n Simple_repeat Simple_repeat 2 32 0 1045 179 0 0 chr11 22342733 22342901 -128440652 + FAM SINE Alu 2 169 -6 1838 244 86 41 chr11 22342934 22343564 -128439989 - MER76 LTR ERV -30 658 1 2299 254 47 32 chr11 22343857 22344478 -128439075 - MER21B LTR ERV1 -134 729 100 248 188 0 42 chr11 22344553 22344601 -128438952 - MER21B LTR ERV1 -778 85 40 281 352 0 0 chr11 22346183 22346288 -128437265 + MER103 DNA DNA 1 105 -61 426 20 0 0 chr11 22347237 22347288 -128436265 + (TA)n Simple_repeat Simple_repeat 1 51 0 1584 282 93 33 chr11 22347299 22348202 -128435351 + L2 LINE L2 2338 3313 0 25 0 0 0 chr11 22348259 22348284 -128435269 + AT_rich Low_complexity Low_complexity 1 25 0 224 288 25 59 chr11 22348484 22348602 -128434951 - MIR SINE MIR -86 176 63 329 331 35 29 chr11 22350164 22350336 -128433217 - MIR SINE MIR -34 228 56 382 338 31 6 chr11 22350541 22350701 -128432852 + MIR3 SINE MIR 38 201 -7 468 326 98 5 chr11 22350805 22351020 -128432533 - MIR SINE MIR -15 247 13 234 0 0 0 chr11 22351246 22351272 -128432281 + (ATATG)n Simple_repeat Simple_repeat 3 28 0 4909 205 42 53 chr11 22351323 22352500 -128431053 + L1MB8 LINE L1 3711 4899 -1279 1528 203 13 16 chr11 22352500 22352810 -128430743 - AluJo SINE Alu 0 312 4 4909 205 42 53 chr11 22352810 22353357 -128430196 + L1MB8 LINE L1 4899 5451 -727 1695 130 0 0 chr11 22353357 22353596 -128429957 + AluSx SINE Alu 58 296 -16 4909 205 42 53 chr11 22353596 22354366 -128429187 + L1MB8 LINE L1 5451 6172 -6 400 306 50 40 chr11 22354763 22354962 -128428591 - L3 LINE CR1 -141 1436 1236 282 239 65 43 chr11 22355012 22355104 -128428449 + MIR SINE MIR 80 173 -89 269 257 40 0 chr11 22355732 22355806 -128427747 - MIR SINE MIR -79 183 107 300 309 0 0 chr11 22356011 22356079 -128427474 + MIR SINE MIR 38 105 -103 2217 150 17 3 chr11 22356257 22356616 -128426937 + THE1B LTR MaLR 1 364 0 10752 107 9 29 chr11 22356617 22358228 -128425325 + THE1B-int LTR MaLR 2 1580 0 2400 124 6 6 chr11 22358228 22358592 -128424961 + THE1B LTR MaLR 1 364 0 2061 178 88 15 chr11 22358712 22359190 -128424363 + Charlie1b DNA MER1_type 11 523 0 233 241 92 23 chr11 22359954 22360041 -128423512 + MLT1H LTR MaLR 205 297 -252 663 249 165 8 chr11 22361188 22361425 -128422128 + ORSL DNA AcHobo 2 275 0 1175 228 24 61 chr11 22361994 22362372 -128421181 + MLT1A1 LTR MaLR 2 365 0 331 266 188 26 chr11 22362396 22362550 -128421003 + MER5A DNA MER1_type 9 187 -2 273 347 81 9 chr11 22363455 22363677 -128419876 + L1 LINE L1 3595 3832 -2314 338 312 54 18 chr11 22364137 22364413 -128419140 - L1ME3A LINE L1 -217 5953 5668 311 164 16 33 chr11 22364443 22364504 -128419049 + MER3 DNA MER1_type 1 60 -149 210 278 17 26 chr11 22364657 22364772 -128418781 + T-rich Low_complexity Low_complexity 2 115 0 293 323 44 75 chr11 22365332 22365694 -128417859 + MER31-int LTR ERV1 3677 4027 -909 233 246 33 0 chr11 22366430 22366491 -128417062 - MIR SINE MIR 0 262 200 2219 161 52 15 chr11 22366491 22366810 -128416743 + L1MA9 LINE L1 5825 6168 -144 240 59 0 0 chr11 22366810 22366844 -128416709 + (CA)n Simple_repeat Simple_repeat 1 34 0 2219 161 52 15 chr11 22366844 22366990 -128416563 + L1MA9 LINE L1 6168 6307 -5 369 242 11 0 chr11 22367140 22367235 -128416318 + MER69 DNA AcHobo 2430 2525 -1 473 276 31 24 chr11 22367238 22367365 -128416188 - MIR SINE MIR -129 133 6 243 314 92 65 chr11 22367553 22367706 -128415847 - MIR SINE MIR -95 167 11 226 297 127 8 chr11 22367792 22367910 -128415643 - MIR SINE MIR -60 202 71 36 62 0 0 chr11 22368903 22368967 -128414586 + AT_rich Low_complexity Low_complexity 1 64 0 543 267 83 107 chr11 22369161 22369834 -128413719 - L1ME3A LINE L1 -230 6009 5354 277 270 6 30 chr11 22370036 22370163 -128413390 - L1ME3A LINE L1 -1134 5081 4956 924 278 83 53 chr11 22370186 22370657 -128412896 - L2 LINE L2 0 3313 2829 209 182 23 0 chr11 22370715 22370759 -128412794 - L2 LINE L2 -582 2732 2688 973 319 48 23 chr11 22370770 22371165 -128412388 - MLT1I LTR MaLR 0 409 5 566 265 114 18 chr11 22371174 22371446 -128412107 - L2 LINE L2 -620 2694 2397 260 250 56 19 chr11 22371516 22371624 -128411929 + LTR33A LTR ERVL 411 522 -1 428 283 48 54 chr11 22371887 22372350 -128411203 - L1ME3A LINE L1 -1373 4842 4383 263 225 110 37 chr11 22372436 22372654 -128410899 - L1ME3A LINE L1 -4130 2266 2033 351 328 87 6 chr11 22372928 22373111 -128410442 + MLT1H1 LTR MaLR 1 198 -357 252 198 0 123 chr11 22373308 22373414 -128410139 + MLT1E3 LTR MaLR 528 620 -4 1780 138 55 0 chr11 22373422 22373749 -128409804 + L1MA9 LINE L1 5946 6290 -22 290 51 34 34 chr11 22373829 22373888 -128409665 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 273 30 30 60 chr11 22373929 22373996 -128409557 + (TTTTA)n Simple_repeat Simple_repeat 1 65 0 2450 18 0 0 chr11 22373996 22374278 -128409275 - L1PA2 LINE L1 -13 6142 5861 946 227 73 5 chr11 22374393 22374613 -128408940 - MLT1A1 LTR MaLR -1 364 130 1788 218 68 16 chr11 22374645 22375159 -128408394 - L1MD3 LINE L1 -16 7979 7439 209 284 81 0 chr11 22375409 22375483 -128408070 + MIR SINE MIR 70 149 -113 3127 185 30 3 chr11 22375724 22376347 -128407206 + L1PB4 LINE L1 5506 6145 -11 323 318 35 38 chr11 22376396 22376592 -128406961 - MIR SINE MIR -50 212 17 29 84 0 0 chr11 22376856 22376927 -128406626 + AT_rich Low_complexity Low_complexity 1 71 0 2127 106 0 44 chr11 22377045 22377365 -128406188 - AluSc SINE Alu -3 306 1 477 327 39 0 chr11 22377646 22377799 -128405754 - MIR SINE MIR -67 195 37 194 31 0 62 chr11 22377826 22377858 -128405695 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 1135 278 37 14 chr11 22378064 22378270 -128405283 - L1MD2 LINE L1 -10 6349 6130 207 0 0 0 chr11 22378270 22378293 -128405260 + (TG)n Simple_repeat Simple_repeat 2 24 0 1135 278 37 14 chr11 22378293 22378438 -128405115 - L1MD2 LINE L1 -229 6130 5990 203 301 121 0 chr11 22378771 22378854 -128404699 + MIR SINE MIR 59 151 -111 192 228 129 99 chr11 22379156 22379257 -128404296 - MIR SINE MIR -75 133 30 247 359 35 12 chr11 22379352 22379531 -128404022 + MIR3 SINE MIR 10 191 -67 343 274 14 27 chr11 22379630 22379776 -128403777 + (TATATG)n Simple_repeat Simple_repeat 3 146 0 185 263 44 79 chr11 22379961 22380075 -128403478 - MIR3 SINE MIR -7 201 92 578 262 7 14 chr11 22380469 22380614 -128402939 - MER5B DNA MER1_type 0 178 35 23 0 0 0 chr11 22380634 22380657 -128402896 + AT_rich Low_complexity Low_complexity 1 23 0 191 286 20 0 chr11 22380657 22380706 -128402847 + MER5B DNA MER1_type 129 178 0 214 242 0 16 chr11 22380751 22380813 -128402740 + (CTAG)n Simple_repeat Simple_repeat 3 63 0 858 308 64 31 chr11 22381225 22381680 -128401873 - L2 LINE L2 -11 3302 2833 320 125 16 0 chr11 22381693 22381757 -128401796 + CT-rich Low_complexity Low_complexity 2 66 0 232 221 0 104 chr11 22381847 22381924 -128401629 - L1M3de LINE L1 -6163 490 422 195 370 94 0 chr11 22381924 22382051 -128401502 - MIR3 SINE MIR -60 148 10 26 74 0 0 chr11 22382251 22382305 -128401248 + AT_rich Low_complexity Low_complexity 1 54 0 234 330 11 32 chr11 22382898 22382992 -128400561 + MIR SINE MIR 20 111 -151 279 282 120 14 chr11 22383181 22383323 -128400230 + L1M4 LINE L1 4204 4360 -1786 23 0 0 0 chr11 22383324 22383347 -128400206 + AT_rich Low_complexity Low_complexity 1 23 0 31490 33 15 1 chr11 22383348 22389369 -128394184 - L1PA3 LINE L1 -1 6154 2 1084 254 43 59 chr11 22390667 22391108 -128392445 - L1ME2 LINE L1 -7 6157 5724 6350 196 41 59 chr11 22391869 22393061 -128390492 - L1MA9 LINE L1 -233 6079 4867 896 228 0 0 chr11 22393061 22393219 -128390334 - FRAM SINE Alu -8 158 1 6350 196 41 59 chr11 22393219 22394585 -128388968 - L1MA9 LINE L1 -1445 4867 3562 218 233 10 33 chr11 22394687 22394757 -128388796 + GA-rich Low_complexity Low_complexity 3 51 0 413 288 17 8 chr11 22394757 22394875 -128388678 + L2 LINE L2 3195 3313 0 316 313 70 0 chr11 22395772 22395887 -128387666 + L2 LINE L2 3191 3313 0 251 331 89 3 chr11 22395931 22396097 -128387456 - MIR SINE MIR -66 142 3 585 262 32 27 chr11 22396409 22396596 -128386957 + MER58A DNA MER1_type 37 224 0 816 233 0 6 chr11 22396748 22396911 -128386642 + FRAM SINE Alu 1 162 -14 240 323 132 37 chr11 22396987 22397072 -128386481 - MIR SINE MIR -17 245 170 2138 99 10 7 chr11 22397072 22397365 -128386188 - AluSx SINE Alu -18 294 1 240 323 132 37 chr11 22397365 22397468 -128386085 - MIR SINE MIR -92 170 39 456 314 97 17 chr11 22397597 22397984 -128385569 - LTR16A LTR ERVL -7 443 1 369 287 69 35 chr11 22397985 22398187 -128385366 - HERV16 LTR ERVL -1 4995 4787 258 375 40 23 chr11 22398227 22398526 -128385027 - ERVL LTR ERVL -531 5233 4930 340 383 122 0 chr11 22399706 22399902 -128383651 - HAL1b LINE L1 -819 529 310 7241 32 14 0 chr11 22400086 22401083 -128382470 + L1PA4 LINE L1 5142 6150 -5 225 0 0 0 chr11 22401090 22401115 -128382438 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 22 56 0 0 chr11 22401560 22401596 -128381957 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr11 22401732 22401762 -128381791 + AT_rich Low_complexity Low_complexity 1 30 0 4762 224 81 33 chr11 22402002 22402858 -128380695 + Charlie1a DNA MER1_type 1 951 -1810 2357 92 0 16 chr11 22402858 22403173 -128380380 + AluSg SINE Alu 1 310 0 4762 224 81 33 chr11 22403173 22403697 -128379856 + Charlie1a DNA MER1_type 951 1448 -7 594 292 84 8 chr11 22404220 22404600 -128378953 + L1ME4a LINE L1 5522 5930 -191 3463 248 81 27 chr11 22405057 22406102 -128377451 + L1MC1 LINE L1 393 1525 -5065 989 245 54 36 chr11 22406125 22406719 -128376834 + L1MC1 LINE L1 1631 3819 -2721 18451 104 10 3 chr11 22406861 22410370 -128373183 - L1PA7 LINE L1 -5 6149 2615 8487 112 5 13 chr11 22410372 22411681 -128371872 + L1PA7 LINE L1 1294 2591 -3555 264 230 59 67 chr11 22411840 22411975 -128371578 + L1MC1 LINE L1 4014 4147 -2393 2180 88 0 14 chr11 22411975 22412271 -128371282 + AluY SINE Alu 1 292 -19 234 0 0 0 chr11 22412289 22412315 -128371238 + (CA)n Simple_repeat Simple_repeat 2 27 0 329 273 23 0 chr11 22412315 22412403 -128371150 - L1MC4 LINE L1 -1339 6703 6614 2446 264 94 12 chr11 22412403 22413353 -128370200 + L1MC1 LINE L1 4139 5166 -1374 1736 218 65 30 chr11 22413378 22413721 -128369832 + L1MC1 LINE L1 5420 5750 -886 327 25 0 0 chr11 22413721 22413761 -128369792 + (CA)n Simple_repeat Simple_repeat 2 41 0 1736 218 65 30 chr11 22413761 22414145 -128369408 + L1MC1 LINE L1 5750 6169 -467 198 0 0 0 chr11 22414145 22414167 -128369386 + (A)n Simple_repeat Simple_repeat 1 22 0 243 0 0 0 chr11 22414597 22414624 -128368929 + (A)n Simple_repeat Simple_repeat 1 27 0 1353 177 78 0 chr11 22414663 22414946 -128368607 + L1MC1 LINE L1 6421 6725 -2 211 360 60 0 chr11 22415208 22415308 -128368245 + MIR SINE MIR 152 257 -5 529 306 46 6 chr11 22415328 22415501 -128368052 - MIR SINE MIR -71 191 12 1062 222 114 43 chr11 22416001 22416370 -128367183 + MSTD LTR MaLR 1 395 -1 2249 251 79 38 chr11 22416899 22417452 -128366101 - L1ME1 LINE L1 -5 6161 5552 2402 91 0 3 chr11 22417452 22417761 -128365792 + AluY SINE Alu 2 309 -2 2249 251 79 38 chr11 22417761 22418182 -128365371 - L1ME1 LINE L1 -614 5552 5150 232 256 23 0 chr11 22418598 22418684 -128364869 + CT-rich Low_complexity Low_complexity 3 90 0 191 414 29 10 chr11 22418693 22418797 -128364756 - L2 LINE L2 -1 3312 3207 231 349 15 38 chr11 22420489 22420621 -128362932 - LTR67 LTR ERVL -37 520 392 216 178 44 0 chr11 22420915 22420960 -128362593 - MIR SINE MIR -179 83 37 200 258 76 30 chr11 22421254 22421320 -128362233 + L3 LINE CR1 1507 1575 -2 214 337 48 24 chr11 22422032 22422115 -128361438 - MIR SINE MIR -107 101 17 914 200 55 0 chr11 22422134 22422299 -128361254 - MER5A DNA MER1_type -15 174 1 280 208 269 23 chr11 22422428 22422558 -128360995 + Charlie8 DNA MER1_type 81 242 -2175 228 231 115 39 chr11 22422652 22422730 -128360823 - MIR SINE MIR -12 250 167 433 158 17 0 chr11 22422761 22422881 -128360672 + (TA)n Simple_repeat Simple_repeat 1 122 0 835 285 45 18 chr11 22423033 22423254 -128360299 - MIR SINE MIR -35 227 1 237 384 24 24 chr11 22423289 22423414 -128360139 - MIR3 SINE MIR -48 160 36 558 237 59 18 chr11 22423536 22423705 -128359848 + MER5B DNA MER1_type 3 178 0 302 393 16 8 chr11 22424344 22424466 -128359087 + L2 LINE L2 3104 3226 -46 245 33 0 0 chr11 22424901 22424955 -128358598 - AluSp/q SINE Alu 0 308 255 630 282 160 51 chr11 22425121 22425155 -128358398 + MLT1H LTR MaLR 110 139 -410 2048 205 75 16 chr11 22425155 22425594 -128357959 - MLT1C LTR MaLR 0 467 3 630 282 160 51 chr11 22425594 22425953 -128357600 + MLT1H LTR MaLR 139 546 -3 766 295 15 75 chr11 22426407 22426807 -128356746 - L3 LINE CR1 -1 1576 1201 2138 116 10 0 chr11 22427509 22427810 -128355743 + AluSc SINE Alu 1 304 -5 254 363 25 0 chr11 22427851 22427931 -128355622 + MIR SINE MIR 49 130 -132 27 62 0 0 chr11 22427931 22427979 -128355574 + AT_rich Low_complexity Low_complexity 1 48 0 214 358 161 7 chr11 22428265 22428402 -128355151 + MIR3 SINE MIR 39 196 -12 627 282 68 19 chr11 22428967 22429173 -128354380 - MIR SINE MIR -14 248 33 1703 163 0 17 chr11 22429251 22429561 -128353992 + AluSx SINE Alu 1 305 0 2177 160 13 21 chr11 22429725 22429798 -128353755 + MSTA LTR MaLR 1 73 -355 2197 149 6 8 chr11 22429798 22430154 -128353399 - THE1A LTR MaLR 0 355 1 2177 160 13 21 chr11 22430154 22430454 -128353099 + MSTA LTR MaLR 73 371 -57 1985 47 12 0 chr11 22430461 22430714 -128352839 - L1PA5 LINE L1 0 6154 5899 2382 38 10 0 chr11 22430714 22431005 -128352548 + L1PA5 LINE L1 5592 5885 -270 472 133 3 13 chr11 22431005 22431087 -128352466 + MSTA LTR MaLR 280 428 0 * 1401 219 114 37 chr11 22431087 22431508 -128352045 + MLT1D LTR MaLR 50 503 -2 243 224 17 0 chr11 22432074 22432132 -128351421 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 280 259 101 44 chr11 22432544 22432702 -128350851 + L1ME LINE L1 5326 5492 -629 303 236 112 28 chr11 22432771 22432949 -128350604 + L1ME LINE L1 5641 5833 -288 22 35 0 0 chr11 22433140 22433169 -128350384 + AT_rich Low_complexity Low_complexity 1 29 0 2071 131 3 0 chr11 22433905 22434210 -128349343 - AluSx SINE Alu -5 307 2 1432 255 52 26 chr11 22436346 22436812 -128346741 - L1ME1 LINE L1 -9 6157 5680 2079 182 9 36 chr11 22437257 22437314 -128346239 + L1MB5 LINE L1 5740 5797 -377 1938 189 76 2 chr11 22437314 22437710 -128345843 + MSTB LTR MaLR 2 426 0 2079 182 9 36 chr11 22437710 22438091 -128345462 + L1MB5 LINE L1 5797 6166 -8 238 333 0 0 chr11 22438530 22438599 -128344954 + MIR SINE MIR 183 251 -11 389 301 133 12 chr11 22439740 22439913 -128343640 - MIR SINE MIR -21 241 48 387 41 0 0 chr11 22440091 22440140 -128343413 + (TG)n Simple_repeat Simple_repeat 2 50 0 3784 169 44 22 chr11 22440151 22440278 -128343275 - L1MA9 LINE L1 -5 6195 6072 348 43 0 0 chr11 22440278 22440324 -128343229 + (TG)n Simple_repeat Simple_repeat 2 47 0 3784 169 44 22 chr11 22440324 22440709 -128342844 - L1MA9 LINE L1 -128 6072 5656 306 0 0 0 chr11 22440709 22440743 -128342810 + (CA)n Simple_repeat Simple_repeat 2 35 0 3784 169 44 22 chr11 22440743 22441044 -128342509 - L1MA9 LINE L1 -544 5656 5363 512 136 123 0 chr11 22441045 22441126 -128342427 - AluSg SINE Alu -30 280 190 1020 91 0 8 chr11 22441127 22441259 -128342294 - AluSg SINE Alu -179 131 1 4585 198 31 16 chr11 22441260 22441809 -128341744 - L1MA9 LINE L1 -743 5291 4752 2658 128 9 42 chr11 22441809 22442256 -128341297 + MSTB1 LTR MaLR 1 432 0 4585 198 31 16 chr11 22442256 22442921 -128340632 - L1MA9 LINE L1 -1282 4752 4144 3549 271 31 48 chr11 22442946 22445050 -128338503 - L1MA9 LINE L1 -4289 1745 11 343 277 102 78 chr11 22445059 22445315 -128338238 + L2 LINE L2 3048 3309 -4 534 302 13 13 chr11 22445509 22445658 -128337895 - MIR SINE MIR -86 176 28 200 118 29 0 chr11 22445804 22445838 -128337715 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 978 110 7 0 chr11 22446610 22446746 -128336807 - MER1B DNA MER1_type 0 339 203 425 263 39 58 chr11 22447178 22447437 -128336116 + MIR SINE MIR 13 261 -1 1442 61 11 0 chr11 22448083 22448264 -128335289 + L1PA5 LINE L1 5964 6146 -8 324 0 0 0 chr11 22448547 22448583 -128334970 + (CA)n Simple_repeat Simple_repeat 2 37 0 230 341 78 31 chr11 22448784 22448913 -128334640 + MIR SINE MIR 86 220 -42 21 0 0 0 chr11 22449112 22449133 -128334420 + AT_rich Low_complexity Low_complexity 1 21 0 4040 38 4 2 chr11 22449804 22450307 -128333246 + L1PA4 LINE L1 5652 6155 0 461 328 59 16 chr11 22450731 22450917 -128332636 - MIR SINE MIR -35 227 34 1981 303 118 38 chr11 22451605 22452291 -128331262 + L2 LINE L2 1927 2557 -756 1536 201 14 3 chr11 22452291 22452580 -128330973 - AluJo SINE Alu -20 292 1 1981 303 118 38 chr11 22452580 22453168 -128330385 + L2 LINE L2 2557 3313 0 891 225 42 50 chr11 22453567 22453812 -128329741 - MLT1A2 LTR MaLR -5 369 125 2503 154 49 5 chr11 22453812 22454222 -128329331 - MSTA LTR MaLR 0 428 1 891 225 42 50 chr11 22454222 22454238 -128329315 - MLT1A2 LTR MaLR -249 125 110 924 150 12 6 chr11 22454239 22454399 -128329154 - MSTA-int LTR MaLR -16 1635 1475 6478 184 11 18 chr11 22454407 22454545 -128329008 - MSTA-int LTR MaLR -466 1185 1047 1836 157 122 40 chr11 22454545 22454940 -128328613 - MSTA LTR MaLR 0 428 2 6478 184 11 18 chr11 22454940 22455621 -128327932 - MSTA-int LTR MaLR -604 1047 375 2235 123 0 7 chr11 22455621 22455931 -128327622 + AluSc SINE Alu 1 308 -1 6478 184 11 18 chr11 22455931 22456304 -128327249 - MSTA-int LTR MaLR -1276 375 1 2481 167 21 0 chr11 22456309 22456728 -128326825 - MSTA LTR MaLR 0 428 1 473 204 133 0 chr11 22456728 22456841 -128326712 - MLT1A2 LTR MaLR -244 130 3 305 309 65 8 chr11 22457225 22457348 -128326205 + L2 LINE L2 3182 3311 -2 249 277 0 0 chr11 22457674 22457739 -128325814 - MIR SINE MIR -18 244 180 487 345 78 35 chr11 22458728 22459163 -128324390 + L3b LINE CR1 1117 1570 -13 1337 214 108 52 chr11 22459740 22459795 -128323758 - MER63B DNA MER1_type -633 429 379 2566 58 0 3 chr11 22459795 22460103 -128323450 - AluY SINE Alu -3 308 2 1337 214 108 52 chr11 22460103 22460453 -128323100 - MER63B DNA MER1_type -683 379 1 242 278 0 31 chr11 22461863 22461960 -128321593 + GA-rich Low_complexity Low_complexity 3 96 0 236 245 0 0 chr11 22462069 22462122 -128321431 + GA-rich Low_complexity Low_complexity 2 54 0 347 319 123 54 chr11 22462132 22462539 -128321014 + L2 LINE L2 2423 2857 -457 24 0 0 0 chr11 22462879 22462903 -128320650 + AT_rich Low_complexity Low_complexity 1 24 0 340 152 76 0 chr11 22464078 22464157 -128319396 - L1PA15 LINE L1 0 6165 6081 489 152 20 10 chr11 22464242 22464341 -128319212 - MER53 DNA DNA -68 121 22 397 146 24 12 chr11 22464268 22464350 -128319203 + MER53 DNA DNA 105 187 -2 * 23 54 0 0 chr11 22464649 22464686 -128318867 + AT_rich Low_complexity Low_complexity 1 37 0 427 339 41 6 chr11 22464762 22464933 -128318620 - MIR SINE MIR -57 205 29 391 286 29 9 chr11 22465894 22465999 -128317554 - L2 LINE L2 -44 3228 3122 183 179 0 0 chr11 22466930 22466958 -128316595 + L2 LINE L2 1784 1811 -1503 2256 89 6 0 chr11 22467187 22467511 -128316042 - pTR5 LTR ERV1 -2047 391 66 269 237 41 21 chr11 22467511 22467608 -128315945 - LTR30 LTR ERV1 -80 642 544 2379 153 94 68 chr11 22467608 22468432 -128315121 - pTR5 LTR ERV1 -413 2025 743 251 366 122 17 chr11 22468435 22468730 -128314823 - L2 LINE L2 -1880 1434 1109 7074 193 28 4 chr11 22469017 22471331 -128312222 - L1PA15 LINE L1 0 6816 4441 2508 125 11 3 chr11 22471331 22471692 -128311861 - THE1B LTR MaLR 0 364 1 7074 193 28 4 chr11 22471692 22471792 -128311761 - L1PA15 LINE L1 -2375 4441 4345 4002 243 35 34 chr11 22471792 22471972 -128311581 - L1PA15 LINE L1 -3402 3395 3217 1672 91 18 0 chr11 22471972 22472192 -128311361 + AluY SINE Alu 85 308 -3 4002 243 35 34 chr11 22472192 22472629 -128310924 - L1PA15 LINE L1 -3580 3217 2782 1630 190 14 7 chr11 22472629 22472908 -128310645 + AluSx SINE Alu 1 281 -31 4002 243 35 34 chr11 22472908 22474390 -128309163 - L1PA15 LINE L1 -4015 2782 1285 314 342 25 77 chr11 22474493 22474689 -128308864 - L1PA15 LINE L1 -6073 714 529 2213 124 0 52 chr11 22474689 22475051 -128308502 - THE1C LTR MaLR -30 345 3 7117 141 13 5 chr11 22475051 22476139 -128307414 - THE1C-int LTR MaLR -1 1579 483 294 95 0 0 chr11 22476139 22476181 -128307372 + (T)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr11 22476323 22476343 -128307210 + (T)n Simple_repeat Simple_repeat 1 20 0 466 304 69 16 chr11 22476556 22476803 -128306750 + L1ME LINE L1 5555 5814 -307 2193 116 10 7 chr11 22477178 22477481 -128306072 + AluSx SINE Alu 1 304 -8 1140 286 61 23 chr11 22477823 22478165 -128305388 + L1M4b LINE L1 96 450 -6409 1057 272 47 3 chr11 22478166 22478504 -128305049 + L1M4b LINE L1 1036 1388 -5471 1061 297 72 41 chr11 22478508 22479032 -128304521 + L1M4b LINE L1 1434 1995 -4964 1417 208 7 44 chr11 22479032 22479330 -128304223 + AluJo SINE Alu 1 287 -25 1061 297 72 41 chr11 22479330 22479653 -128303900 + L1M4b LINE L1 1995 2307 -4652 1487 105 0 0 chr11 22479654 22479845 -128303708 + AluSg SINE Alu 1 191 -119 538 90 0 56 chr11 22479845 22479934 -128303619 + AluSg SINE Alu 224 307 -3 189 0 0 0 chr11 22480070 22480091 -128303462 + (A)n Simple_repeat Simple_repeat 1 21 0 395 270 56 107 chr11 22480096 22480366 -128303187 + L1M4b LINE L1 2445 2700 -4438 39 0 0 0 chr11 22480510 22480549 -128303004 + AT_rich Low_complexity Low_complexity 1 39 0 344 308 55 9 chr11 22480622 22480947 -128302606 + L1M4b LINE L1 2655 2994 -3965 636 288 48 46 chr11 22480948 22481494 -128302059 + L1M4b LINE L1 3782 4328 -2629 3250 230 69 8 chr11 22481516 22482504 -128301049 + L1M4b LINE L1 4511 5558 -1399 243 318 24 12 chr11 22482718 22482803 -128300750 - LTR67 LTR ERVL -470 87 2 52 41 0 0 chr11 22482953 22483026 -128300527 + AT_rich Low_complexity Low_complexity 1 73 0 21 0 0 0 chr11 22483137 22483158 -128300395 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 22483948 22483970 -128299583 + AT_rich Low_complexity Low_complexity 1 22 0 260 196 0 0 chr11 22484009 22484060 -128299493 - L2 LINE L2 0 3313 3263 198 0 0 0 chr11 22484149 22484171 -128299382 + (TG)n Simple_repeat Simple_repeat 2 23 0 579 108 0 0 chr11 22484202 22484295 -128299258 + (CA)n Simple_repeat Simple_repeat 1 93 0 765 328 64 25 chr11 22484461 22485131 -128298422 + L1M4 LINE L1 2123 2818 -3328 367 281 59 15 chr11 22485390 22485525 -128298028 + MER93a LTR ERV1 259 399 -3 2360 61 0 0 chr11 22487841 22488166 -128295387 + AluY SINE Alu 1 325 0 265 271 110 45 chr11 22488369 22488524 -128295029 + MER57-int LTR ERV1 419 583 -4064 1042 303 30 81 chr11 22489586 22490928 -128292625 + MER57-int LTR ERV1 2093 6132 -1405 270 275 64 18 chr11 22492197 22492306 -128291247 + MER57-int LTR ERV1 7246 7359 -360 290 270 31 31 chr11 22492400 22492572 -128290981 + MER57-int LTR ERV1 6586 6667 -134 309 242 74 0 chr11 22492679 22492774 -128290779 + MER57-int LTR ERV1 7060 7161 -376 698 250 0 13 chr11 22492842 22492994 -128290559 + AluJo SINE Alu 6 155 -157 233 219 0 31 chr11 22492996 22493060 -128290493 - FRAM SINE Alu -65 101 40 577 205 0 0 chr11 22493069 22493181 -128290372 + FRAM SINE Alu 58 169 -7 652 278 45 38 chr11 22493258 22493317 -128290236 + MER93a LTR ERV1 131 188 -214 1497 208 100 8 chr11 22493317 22493678 -128289875 + MSTD LTR MaLR 1 394 -2 652 278 45 38 chr11 22493678 22493884 -128289669 + MER93a LTR ERV1 188 398 -4 438 313 85 41 chr11 22493885 22494249 -128289304 + L1M4 LINE L1 2813 3192 -2954 473 306 83 33 chr11 22494478 22494876 -128288677 + L1M4 LINE L1 3544 3961 -2185 588 288 27 27 chr11 22494889 22495073 -128288480 - L2 LINE L2 -519 2795 2612 387 0 0 0 chr11 22495893 22495936 -128287617 + (CA)n Simple_repeat Simple_repeat 1 43 0 192 362 43 36 chr11 22496210 22496348 -128287205 + L2 LINE L2 2916 3054 -218 579 185 193 0 chr11 22496385 22496504 -128287049 - AluSq/x SINE Alu -171 142 1 1387 212 37 76 chr11 22496505 22496887 -128286666 - MSTD LTR MaLR -29 367 1 599 239 0 15 chr11 22496887 22497019 -128286534 + MLT1C LTR MaLR 338 467 0 1835 153 0 7 chr11 22497607 22497895 -128285658 - AluSx SINE Alu -26 286 1 268 279 9 18 chr11 22497931 22498042 -128285511 + HAL1 LINE L1 1531 1640 -867 251 243 48 48 chr11 22498498 22498601 -128284952 + HAL1 LINE L1 2405 2507 0 222 190 17 17 chr11 22498807 22498865 -128284688 + A-rich Low_complexity Low_complexity 3 60 0 721 271 124 56 chr11 22499221 22499512 -128284041 + L1M4 LINE L1 2740 3010 -3136 2305 53 0 3 chr11 22499512 22499821 -128283732 + AluY SINE Alu 2 309 0 721 271 124 56 chr11 22499821 22500060 -128283493 + L1M4 LINE L1 3010 3307 -2839 22 56 0 0 chr11 22500312 22500348 -128283205 + AT_rich Low_complexity Low_complexity 1 36 0 216 97 0 0 chr11 22500401 22500432 -128283121 + (TCCA)n Simple_repeat Simple_repeat 1 31 0 237 247 14 7 chr11 22500633 22500743 -128282810 + (TA)n Simple_repeat Simple_repeat 1 114 -33 894 248 126 16 chr11 22500743 22501053 -128282500 + MER2 DNA MER2_type 1 344 0 237 247 14 7 chr11 22501053 22501088 -128282465 + (TA)n Simple_repeat Simple_repeat 114 147 0 207 282 107 93 chr11 22501710 22501926 -128281627 + L2 LINE L2 3028 3246 -26 271 0 0 0 chr11 22502352 22502391 -128281162 + AluY SINE Alu 263 301 0 212 0 36 0 chr11 22502546 22502574 -128280979 + (TA)n Simple_repeat Simple_repeat 2 30 0 2234 234 80 11 chr11 22503193 22503805 -128279748 - MLT1E1 LTR MaLR 0 654 1 183 267 0 0 chr11 22503857 22503932 -128279621 + (TATATG)n Simple_repeat Simple_repeat 4 78 0 241 296 62 0 chr11 22504554 22504635 -128278918 - MIR SINE MIR -114 148 63 339 319 115 0 chr11 22505041 22505223 -128278330 - MIR SINE MIR -8 254 52 365 342 65 16 chr11 22506247 22506431 -128277122 + MIR SINE MIR 14 206 -56 6083 181 40 9 chr11 22506480 22507927 -128275626 - L1MA5 LINE L1 0 6300 4774 2108 125 0 0 chr11 22507927 22508222 -128275331 - AluSx SINE Alu -17 295 1 6083 181 40 9 chr11 22508222 22509008 -128274545 - L1MA5 LINE L1 -1526 4774 4013 273 277 108 0 chr11 22510611 22510694 -128272859 - MIR SINE MIR -4 258 167 229 328 30 38 chr11 22511206 22511337 -128272216 + LTR16C LTR ERVL 362 491 0 1167 243 55 17 chr11 22511604 22511981 -128271572 - L1ME2 LINE L1 -44 6120 5735 398 175 58 19 chr11 22512234 22512337 -128271216 - MER103 DNA DNA -59 107 1 204 196 0 39 chr11 22512387 22512438 -128271115 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 21 57 0 0 chr11 22512758 22512793 -128270760 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr11 22516467 22516490 -128267063 + AT_rich Low_complexity Low_complexity 1 23 0 1801 200 103 77 chr11 22517114 22517813 -128265740 - MER50 LTR ERV1 -8 726 10 311 306 83 32 chr11 22517813 22517970 -128265583 + MIR SINE MIR 85 249 -13 414 281 74 0 chr11 22518787 22518908 -128264645 - MIR SINE MIR -49 213 84 598 196 105 0 chr11 22519125 22519172 -128264381 + AluJo SINE Alu 72 113 -199 195 42 0 0 chr11 22519172 22519196 -128264357 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 598 196 105 0 chr11 22519196 22519281 -128264272 + AluJo SINE Alu 113 218 -94 386 225 11 11 chr11 22519312 22519421 -128264132 + AluJ/FRAM SINE Alu 232 296 -6 22 0 0 0 chr11 22519429 22519451 -128264102 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr11 22519474 22519512 -128264041 + AT_rich Low_complexity Low_complexity 1 38 0 567 195 26 32 chr11 22519571 22519725 -128263828 - L1MA8 LINE L1 -10 6281 6129 13917 174 54 22 chr11 22519745 22521949 -128261604 - L1MA2 LINE L1 0 7723 5591 2042 133 0 3 chr11 22521949 22522242 -128261311 + AluSg SINE Alu 4 295 -15 13917 174 54 22 chr11 22522242 22523776 -128259777 - L1MA2 LINE L1 -2132 5591 4108 2007 144 133 13 chr11 22523776 22524158 -128259395 + MSTA LTR MaLR 1 428 0 13917 174 54 22 chr11 22524158 22525641 -128257912 - L1MA2 LINE L1 -3615 4108 2325 17574 64 12 7 chr11 22525642 22528846 -128254707 - L1PA6 LINE L1 0 6154 2973 4346 220 38 14 chr11 22528847 22529836 -128253717 - L1MA2 LINE L1 -6534 1031 19 11449 208 39 18 chr11 22529842 22533435 -128250118 - L1MA8 LINE L1 -156 6135 2459 483 321 30 18 chr11 22533435 22533603 -128249950 + L2 LINE L2 2754 2923 -391 242 89 44 0 chr11 22535428 22535473 -128248080 - L1PA4 LINE L1 -2 6153 6107 181 342 145 46 chr11 22536181 22536333 -128247220 - L3 LINE CR1 -882 695 529 236 30 30 0 chr11 22536812 22536845 -128246708 + (TTG)n Simple_repeat Simple_repeat 3 36 0 1980 136 58 3 chr11 22537381 22537711 -128245842 + MER7A DNA MER2_type 1 346 0 2273 111 23 9 chr11 22537799 22538149 -128245404 - THE1A LTR MaLR 0 355 1 11079 109 4 6 chr11 22538149 22539732 -128243821 - THE1A-int LTR MaLR 0 1580 1 359 125 0 0 chr11 22539732 22539780 -128243773 - THE1A LTR MaLR 0 355 308 1428 161 47 29 chr11 22539918 22540197 -128243356 + AluJb SINE Alu 27 310 -2 1821 165 64 14 chr11 22541387 22541744 -128241809 - THE1C LTR MaLR 0 375 1 264 326 153 7 chr11 22541848 22541992 -128241561 + MLT1K LTR MaLR 12 176 -412 2038 241 64 2 chr11 22542016 22542551 -128241002 - L1MB7 LINE L1 -25 6159 5592 983 269 36 34 chr11 22542555 22542912 -128240641 - L1M4 LINE L1 -6183 359 2 669 297 113 19 chr11 22543190 22543456 -128240097 + LTR16C LTR ERVL 198 488 -3 275 263 0 32 chr11 22543616 22543711 -128239842 + MLT1K LTR MaLR 495 586 -2 319 21 42 0 chr11 22543734 22543782 -128239771 + (CAAA)n Simple_repeat Simple_repeat 4 53 0 279 274 45 78 chr11 22543841 22544020 -128239533 - MER110A LTR ERV1 -45 423 251 32 0 0 0 chr11 22544388 22544420 -128239133 + AT_rich Low_complexity Low_complexity 1 32 0 350 318 151 0 chr11 22545041 22545167 -128238386 + MIR SINE MIR 48 192 -70 796 210 90 57 chr11 22545180 22545667 -128237886 + LTR18A LTR ERVL 1 608 -6 1334 177 12 10 chr11 22545674 22545939 -128237614 + HERVL18 LTR ERVL 8 304 -5743 878 223 178 5 chr11 22545924 22546121 -128237432 + HERVL18 LTR ERVL 463 693 -5354 * 2978 156 4 2 chr11 22546121 22546590 -128236963 + HERVL18 LTR ERVL 1324 1793 -4254 2503 47 0 0 chr11 22546610 22546907 -128236646 - AluY SINE Alu -11 300 4 6331 151 7 12 chr11 22546934 22548346 -128235207 + HERVL18 LTR ERVL 2119 3579 -2468 1603 136 8 4 chr11 22548348 22548591 -128234962 + HERVL18 LTR ERVL 4394 4637 -1410 744 230 5 108 chr11 22548651 22548855 -128234698 + LTR18A LTR ERVL 1 183 -174 579 242 95 28 chr11 22548925 22549136 -128234417 + LTR18B LTR ERVL 383 607 -7 209 255 0 0 chr11 22550100 22550147 -128233406 - L2 LINE L2 0 3313 3267 475 320 48 35 chr11 22550176 22550404 -128233149 - MIR SINE MIR -30 232 2 4952 157 35 4 chr11 22550818 22552060 -128231493 - L1PA15 LINE L1 -2 6163 4897 180 0 0 0 chr11 22552772 22552792 -128230761 + (T)n Simple_repeat Simple_repeat 1 20 0 405 0 0 0 chr11 22553291 22553336 -128230217 + (CA)n Simple_repeat Simple_repeat 1 45 0 193 362 43 36 chr11 22553611 22553749 -128229804 + L2 LINE L2 2916 3054 -218 257 247 143 0 chr11 22553894 22553971 -128229582 - L2 LINE L2 -1 3312 3225 212 367 130 5 chr11 22553968 22554183 -128229370 - L2 LINE L2 -229 3084 2843 * 2136 27 0 15 chr11 22554542 22554803 -128228750 + L1PA4 LINE L1 5895 6151 -4 349 198 165 0 chr11 22554820 22554911 -128228642 + L1PB4 LINE L1 6051 6156 0 1053 30 0 8 chr11 22555819 22555952 -128227601 - L1PA5 LINE L1 0 6154 6023 256 280 27 0 chr11 22556823 22556898 -128226655 - MIR SINE MIR -115 147 71 2020 119 0 14 chr11 22556948 22557275 -128226278 + AluSc SINE Alu 1 323 0 970 265 136 10 chr11 22557364 22557893 -128225660 - MER69 DNA AcHobo -2 2524 1920 * 1408 275 39 32 chr11 22557888 22558321 -128225232 - MER69 DNA AcHobo -790 436 1 2280 236 67 21 chr11 22558870 22559494 -128224059 + MLT1E1 LTR MaLR 1 653 -1 1386 203 56 53 chr11 22559812 22559880 -128223673 + MLT2C1 LTR ERVL 1 67 -330 2042 124 59 31 chr11 22559880 22560234 -128223319 + THE1B LTR MaLR 1 364 0 1386 203 56 53 chr11 22560234 22560559 -128222994 + MLT2C1 LTR ERVL 67 395 -2 2380 120 11 0 chr11 22561649 22561998 -128221555 - THE1A LTR MaLR -2 353 1 292 134 16 47 chr11 22562129 22562256 -128221297 + (TA)n Simple_repeat Simple_repeat 2 124 0 1309 257 64 27 chr11 22562293 22562698 -128220855 - MLT1C LTR MaLR -47 420 1 6716 65 0 77 chr11 22563443 22564553 -128219000 - L1PA7 LINE L1 -1 6153 5070 14520 87 6 1 chr11 22564553 22566577 -128216976 + L1P LINE L1 2348 4381 -1765 2159 172 28 42 chr11 22566582 22567013 -128216540 - LTR3 LTR ERVK -3 429 5 4686 98 4 1 chr11 22567014 22567701 -128215852 + L1P LINE L1 4373 5061 -1085 275 275 13 64 chr11 22567779 22567935 -128215618 + MER61E LTR ERV1 98 234 -379 1089 183 20 0 chr11 22567955 22568152 -128215401 + MER61E LTR ERV1 341 541 -28 599 276 67 33 chr11 22568483 22568962 -128214591 + L1ME LINE L1 519 1013 -5057 1266 248 66 28 chr11 22569003 22569180 -128214373 - L1MC4 LINE L1 -321 7563 7394 1503 191 7 36 chr11 22569180 22569483 -128214070 - AluJb SINE Alu -12 300 7 1266 248 66 28 chr11 22569483 22569843 -128213710 - L1MC4 LINE L1 -490 7394 6882 2500 205 58 51 chr11 22569843 22570532 -128213021 - LTR8A LTR ERV1 0 727 34 2968 266 103 61 chr11 22570560 22572937 -128210616 - L1MC4a LINE L1 -743 5403 4406 227 224 0 0 chr11 22572982 22573040 -128210513 - L1 LINE L1 -1820 4326 4269 2261 94 0 10 chr11 22573925 22574232 -128209321 + AluY SINE Alu 1 304 -7 370 311 82 22 chr11 22574676 22574859 -128208694 + MIR SINE MIR 20 213 -49 323 311 98 52 chr11 22575462 22575655 -128207898 - MIR SINE MIR -58 204 3 3068 176 57 2 chr11 22577720 22578323 -128205230 - L1MD3 LINE L1 0 8413 6121 778 215 107 8 chr11 22578331 22578592 -128204961 - L1MD3 LINE L1 -1511 5053 4767 719 206 0 15 chr11 22578592 22578728 -128204825 + AluJo SINE Alu 1 134 -178 1868 244 70 20 chr11 22578736 22579282 -128204271 - L1MD3 LINE L1 -1787 4777 4193 1180 179 179 0 chr11 22579282 22579567 -128203986 - MER44D DNA MER2_type 0 609 4 1868 244 70 20 chr11 22579567 22579659 -128203894 - L1MD3 LINE L1 -2371 4193 4107 1744 221 104 10 chr11 22579653 22579952 -128203601 - L1MD3 LINE L1 -4598 1966 1697 * 186 103 0 0 chr11 22579952 22579981 -128203572 + (TG)n Simple_repeat Simple_repeat 2 30 0 1744 221 104 10 chr11 22579981 22580319 -128203234 - L1MD3 LINE L1 -4867 1697 1182 537 135 0 0 chr11 22580320 22580409 -128203144 + (TTCCC)n Simple_repeat Simple_repeat 4 92 0 2095 261 73 67 chr11 22581016 22581533 -128202020 + L1MEc LINE L1 252 765 -5450 2197 64 7 40 chr11 22581533 22581830 -128201723 + AluY SINE Alu 21 307 -4 2095 261 73 67 chr11 22581830 22582020 -128201533 + L1MEc LINE L1 765 952 -5263 2187 116 0 3 chr11 22582020 22582321 -128201232 + AluSx SINE Alu 1 300 -12 2095 261 73 67 chr11 22582321 22582774 -128200779 + L1MEc LINE L1 952 1371 -4844 933 314 19 14 chr11 22583259 22583625 -128199928 - L1MD3 LINE L1 -5674 371 4 23 0 0 0 chr11 22583751 22583774 -128199779 + AT_rich Low_complexity Low_complexity 1 23 0 1504 167 8 15 chr11 22583782 22584046 -128199507 - AluJo SINE Alu -23 289 28 2403 100 0 3 chr11 22584610 22584920 -128198633 - AluSc SINE Alu 0 309 1 200 273 0 0 chr11 22584987 22585031 -128198522 - MIR SINE MIR -108 154 111 3043 240 71 5 chr11 22586833 22587996 -128195557 - L1ME LINE L1 -689 5477 4247 866 203 69 61 chr11 22588239 22588614 -128194939 + MER65A-int LTR ERV1 2058 4083 -2593 2055 119 3 17 chr11 22588624 22588926 -128194627 - AluSx SINE Alu -14 298 1 631 180 21 72 chr11 22589211 22589405 -128194148 + MER65A-int LTR ERV1 3547 3730 -2868 1270 207 71 67 chr11 22589484 22589645 -128193908 + MER65A-int LTR ERV1 2471 2630 -2306 1984 94 0 0 chr11 22589645 22589890 -128193663 + AluSg SINE Alu 38 282 -28 605 131 0 0 chr11 22589806 22589892 -128193661 + AluSg/x SINE Alu 201 315 0 * 187 103 0 0 chr11 22589892 22589921 -128193632 + (CAA)n Simple_repeat Simple_repeat 2 180 0 1270 207 71 67 chr11 22589921 22589959 -128193594 + MER65A-int LTR ERV1 2630 2666 -2270 1497 180 20 36 chr11 22589959 22590265 -128193288 - AluJo SINE Alu -11 301 1 1270 207 71 67 chr11 22590265 22591381 -128192172 + MER65A-int LTR ERV1 2666 3631 -1305 1119 118 0 0 chr11 22591381 22591542 -128192011 - MLT2A2 LTR ERVL 0 453 293 390 240 50 0 chr11 22591547 22591647 -128191906 + MER65A-int LTR ERV1 4927 5031 -1300 1523 247 89 29 chr11 22591924 22592405 -128191148 + MER65A-int LTR ERV1 3606 4115 -756 1636 241 62 4 chr11 22592416 22592992 -128190561 + MER65A-int LTR ERV1 4237 4869 -2 2474 147 2 67 chr11 22592993 22593469 -128190084 + MER65A LTR ERV1 1 445 0 222 324 144 18 chr11 22593506 22593617 -128189936 + L2 LINE L2 3143 3267 -5 23 0 0 0 chr11 22593691 22593714 -128189839 + AT_rich Low_complexity Low_complexity 1 23 0 1899 115 21 17 chr11 22593901 22594188 -128189365 - AluSc SINE Alu -21 288 1 288 271 332 4 chr11 22594219 22594459 -128189094 - L2 LINE L2 -290 3023 2716 339 378 16 0 chr11 22594657 22594784 -128188769 - L2 LINE L2 -243 3070 2942 576 325 38 13 chr11 22594888 22595125 -128188428 + MIR SINE MIR 9 251 -11 2281 79 0 57 chr11 22595366 22595683 -128187870 - AluY SINE Alu -12 299 1 1230 128 20 0 chr11 22596077 22596281 -128187272 - LTR54 LTR ERV1 -4 506 299 476 130 0 0 chr11 22596286 22596355 -128187198 - LTR54 LTR ERV1 -441 69 1 580 301 83 98 chr11 22597404 22597935 -128185618 - MLT1K LTR MaLR -32 556 34 180 0 0 0 chr11 22598459 22598479 -128185074 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 225 329 134 32 chr11 22599063 22599279 -128184274 - MIR SINE MIR -8 254 17 541 293 37 18 chr11 22599424 22599611 -128183942 - MIR SINE MIR -8 254 64 962 105 0 19 chr11 22599745 22599956 -128183597 + (TA)n Simple_repeat Simple_repeat 1 206 0 2493 295 74 34 chr11 22599986 22600724 -128182829 + L1MEc LINE L1 84 791 -5426 1654 199 27 3 chr11 22600724 22601016 -128182537 + AluJo SINE Alu 1 299 -13 2493 295 74 34 chr11 22601016 22601798 -128181755 + L1MEc LINE L1 791 1518 -4699 434 286 60 0 chr11 22601804 22601937 -128181616 - L2 LINE L2 -963 2351 2211 398 356 109 21 chr11 22601987 22602318 -128181235 - L2 LINE L2 -561 2753 2394 255 374 9 0 chr11 22602456 22602563 -128180990 - L2 LINE L2 -957 2357 2250 764 296 38 12 chr11 22602911 22603151 -128180402 - MIR SINE MIR 0 262 17 402 265 32 26 chr11 22604078 22604267 -128179286 - L1M4 LINE L1 -3774 2372 2183 182 289 206 0 chr11 22605271 22605368 -128178185 - MIR SINE MIR -7 255 139 28 0 0 0 chr11 22605368 22605396 -128178157 + AT_rich Low_complexity Low_complexity 1 28 0 201 396 30 0 chr11 22605627 22605728 -128177825 + L2 LINE L2 3192 3295 -18 297 0 0 0 chr11 22605806 22605839 -128177714 + (CA)n Simple_repeat Simple_repeat 2 34 0 183 80 0 0 chr11 22607383 22607408 -128176145 + (A)n Simple_repeat Simple_repeat 1 25 0 360 148 0 0 chr11 22607539 22607600 -128175953 + (CA)n Simple_repeat Simple_repeat 2 62 0 484 200 100 0 chr11 22609076 22609196 -128174357 - L1MA8 LINE L1 -163 7088 6957 * 2675 169 49 1 chr11 22609190 22609958 -128173595 - L1MA8 LINE L1 -646 6605 5801 * 4701 170 30 5 chr11 22609956 22610911 -128172642 + L1PB4 LINE L1 5175 6151 -5 4824 233 187 6 chr11 22610919 22611929 -128171624 - L1MA8 LINE L1 -1286 5820 4488 1990 156 119 8 chr11 22611929 22612314 -128171239 + MSTA LTR MaLR 1 428 0 4824 233 187 6 chr11 22612314 22612692 -128170861 - L1MA8 LINE L1 -2618 4488 4180 * 14122 216 23 10 chr11 22612678 22615922 -128167631 - L1P LINE L1 -913 5233 1949 3506 254 91 47 chr11 22615922 22617152 -128166401 - L1PA12 LINE L1 -6151 1430 6 320 77 5 0 chr11 22617152 22617199 -128166354 + MSTA LTR MaLR 378 428 0 4864 200 28 2 chr11 22617199 22618156 -128165397 + MSTA-int LTR MaLR 1 982 -669 1591 143 24 0 chr11 22618156 22618408 -128165145 - MLT2A2 LTR ERVL -193 260 3 1168 278 32 39 chr11 22618411 22619339 -128164214 - L1MA8 LINE L1 -4694 2343 222 347 361 30 20 chr11 22619752 22619954 -128163599 + MIR SINE MIR 49 252 -10 41 36 0 0 chr11 22619996 22620051 -128163502 + AT_rich Low_complexity Low_complexity 1 55 0 268 296 105 26 chr11 22620074 22620226 -128163327 - L2 LINE L2 -2 3311 3148 314 323 89 13 chr11 22620861 22621019 -128162534 - MIR3 SINE MIR -3 205 36 689 269 83 9 chr11 22621417 22621633 -128161920 + L1ME3 LINE L1 4857 5088 -1058 1305 153 13 18 chr11 22621642 22622095 -128161458 - LTR54 LTR ERV1 0 510 1 1764 239 82 45 chr11 22622096 22622975 -128160578 + L1ME3 LINE L1 5102 6013 -149 281 226 152 79 chr11 22623025 22623189 -128160364 + L1ME3 LINE L1 5931 6106 -56 212 83 0 28 chr11 22623360 22623396 -128160157 + (TCTCCC)n Simple_repeat Simple_repeat 3 37 0 287 220 0 0 chr11 22623546 22623596 -128159957 + MER94 DNA DNA 2 51 -83 222 62 0 0 chr11 22623609 22623641 -128159912 + (TC)n Simple_repeat Simple_repeat 2 33 0 87 73 0 0 chr11 22623657 22623835 -128159718 + AT_rich Low_complexity Low_complexity 1 178 0 1956 139 0 27 chr11 22623926 22624220 -128159333 + AluSx SINE Alu 2 287 -25 1107 251 63 20 chr11 22624491 22624980 -128158573 + MER114 LTR ERV 1 510 -138 21 71 0 0 chr11 22625484 22625526 -128158027 + AT_rich Low_complexity Low_complexity 1 42 0 11533 214 29 37 chr11 22626887 22627565 -128155988 + L1P3 LINE L1 1 683 -5778 189 0 0 0 chr11 22627565 22627586 -128155967 + (CACAG)n Simple_repeat Simple_repeat 1 21 0 11533 214 29 37 chr11 22627586 22630652 -128152901 + L1P3 LINE L1 683 3746 -2715 962 329 89 36 chr11 22630881 22631547 -128152006 - L2 LINE L2 -339 2975 2275 282 260 115 77 chr11 22633406 22633614 -128149939 + MLT1L LTR MaLR 169 384 -231 2001 140 33 0 chr11 22633760 22634060 -128149493 - AluSg SINE Alu 0 310 1 2723 20 0 0 chr11 22634081 22634385 -128149168 - AluYa5 SINE Alu -7 304 1 5496 204 57 112 chr11 22635651 22636781 -128146772 + L1M1 LINE L1 597 1565 -6000 * 6458 36 1 0 chr11 22635998 22636781 -128146772 - L1PA4 LINE L1 -977 5169 4386 7492 33 0 1 chr11 22636781 22637797 -128145756 + L1PA4 LINE L1 5138 6152 -3 5496 204 57 112 chr11 22637797 22638715 -128144838 + L1M1 LINE L1 1565 2532 -5033 186 71 0 0 chr11 22638715 22638743 -128144810 + (TA)n Simple_repeat Simple_repeat 2 29 0 303 49 0 0 chr11 22638748 22638789 -128144764 + (GA)n Simple_repeat Simple_repeat 1 41 0 324 0 0 0 chr11 22639448 22639484 -128144069 + (TA)n Simple_repeat Simple_repeat 1 36 0 6532 186 34 74 chr11 22639505 22642104 -128141449 + L1M1 LINE L1 2531 5232 -2333 663 127 25 68 chr11 22642104 22642222 -128141331 + AluJb SINE Alu 4 116 -196 221 0 0 33 chr11 22642223 22642253 -128141300 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6532 186 34 74 chr11 22642253 22643060 -128140493 + L1M1 LINE L1 5231 5837 -1728 4012 115 37 5 chr11 22643060 22643704 -128139849 + L1MA3 LINE L1 5633 6297 -8 230 329 82 44 chr11 22644076 22644234 -128139319 - MER5B DNA MER1_type -14 164 1 308 298 93 13 chr11 22644235 22644386 -128139167 - L2 LINE L2 -546 2768 2606 285 313 44 6 chr11 22644424 22644606 -128138947 - L2 LINE L2 -411 2903 2715 198 0 0 0 chr11 22644830 22644852 -128138701 + (TA)n Simple_repeat Simple_repeat 2 23 0 395 208 0 0 chr11 22645312 22645418 -128138135 + (TA)n Simple_repeat Simple_repeat 2 107 0 241 196 22 43 chr11 22645428 22645520 -128138033 + L1MC4 LINE L1 6614 6703 -1339 258 353 140 7 chr11 22645914 22646064 -128137489 + MIR SINE MIR 87 256 -6 483 296 24 18 chr11 22646147 22646316 -128137237 - MER117 DNA MER1_type -27 170 1 1726 214 100 21 chr11 22646555 22647023 -128136530 + MLT1D LTR MaLR 1 505 0 376 274 164 20 chr11 22647220 22647366 -128136187 + MIR SINE MIR 81 247 -15 1503 207 10 20 chr11 22648592 22648887 -128134666 - AluJo SINE Alu -20 292 1 189 121 0 0 chr11 22649820 22649853 -128133700 + (TTG)n Simple_repeat Simple_repeat 1 33 0 221 221 9 35 chr11 22649877 22649990 -128133563 + CT-rich Low_complexity Low_complexity 2 111 0 2342 82 0 0 chr11 22650206 22650498 -128133055 - AluSq SINE Alu -11 302 11 780 266 40 13 chr11 22650686 22650741 -128132812 + MIR SINE MIR 27 79 -183 186 103 0 0 chr11 22650741 22650770 -128132783 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 780 266 40 13 chr11 22650770 22650940 -128132613 + MIR SINE MIR 79 258 -4 192 40 0 0 chr11 22652282 22652307 -128131246 + (CA)n Simple_repeat Simple_repeat 2 26 0 243 254 0 45 chr11 22652662 22652729 -128130824 - MER103 DNA DNA -41 125 62 180 250 58 0 chr11 22653816 22653868 -128129685 - MIR3 SINE MIR 0 208 154 206 158 53 21 chr11 22654096 22654191 -128129362 + GA-rich Low_complexity Low_complexity 2 99 0 208 229 21 0 chr11 22654222 22654270 -128129283 + L2 LINE L2 3263 3311 -2 244 243 56 84 chr11 22654328 22654379 -128129174 + MIR SINE MIR 159 210 -52 183 80 0 0 chr11 22654379 22654404 -128129149 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 244 243 56 84 chr11 22654404 22654459 -128129094 + MIR SINE MIR 210 262 0 313 246 45 0 chr11 22654508 22654592 -128128961 - MIR SINE MIR -37 171 100 420 325 65 7 chr11 22656879 22657033 -128126520 + MER5B DNA MER1_type 10 172 -6 665 284 19 16 chr11 22657089 22657314 -128126239 + MIR SINE MIR 41 262 0 201 294 184 9 chr11 22657411 22657520 -128126033 + MIR SINE MIR 16 143 -65 338 235 51 20 chr11 22657527 22657625 -128125928 + MER58 DNA MER1_type 12 112 -103 307 225 84 0 chr11 22657617 22657688 -128125865 + MER58 DNA MER1_type 2343 2419 -1 * 478 289 169 0 chr11 22657701 22657843 -128125710 - MER5A DNA MER1_type -6 183 18 315 283 9 26 chr11 22657872 22657985 -128125568 - MER5B DNA MER1_type -67 111 1 1639 165 47 7 chr11 22658050 22658347 -128125206 + AluJb SINE Alu 1 309 -3 2168 133 0 0 chr11 22659879 22660188 -128123365 + AluSx SINE Alu 1 309 -3 666 264 6 24 chr11 22661040 22661207 -128122346 + MIR SINE MIR 99 262 0 260 300 0 67 chr11 22661352 22661442 -128122111 - MIR SINE MIR -159 103 20 194 380 39 68 chr11 22662684 22662767 -128120786 + L2 LINE L2 2927 3011 -261 1881 154 65 11 chr11 22662767 22663123 -128120430 - THE1C LTR MaLR 0 375 1 194 380 39 68 chr11 22663123 22663394 -128120159 + L2 LINE L2 3011 3271 -1 206 344 0 0 chr11 22663394 22663458 -128120095 + GA-rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr11 22664641 22664662 -128118891 + AT_rich Low_complexity Low_complexity 1 21 0 532 236 14 14 chr11 22665013 22665153 -128118400 + MIR SINE MIR 123 262 0 882 335 55 19 chr11 22665451 22665830 -128117723 - L2 LINE L2 0 3313 2921 597 78 20 20 chr11 22667173 22667275 -128116278 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 330 334 210 29 chr11 22667497 22667886 -128115667 - L2 LINE L2 -265 3048 2592 354 61 0 0 chr11 22668575 22668624 -128114929 + (CA)n Simple_repeat Simple_repeat 2 50 0 274 276 31 55 chr11 22668776 22668903 -128114650 - MER103 DNA DNA -25 141 18 1794 131 63 0 chr11 22669041 22669309 -128114244 - AluSx SINE Alu -27 285 1 411 306 64 13 chr11 22669334 22669491 -128114062 + MLT1I LTR MaLR 1 165 -244 271 253 30 63 chr11 22670025 22670138 -128113415 + MIR SINE MIR 40 153 -62 201 328 139 6 chr11 22670455 22670635 -128112918 + L2 LINE L2 1154 1357 -1957 308 296 37 58 chr11 22670716 22670905 -128112648 - L2 LINE L2 -9 3304 3120 203 318 164 0 chr11 22670937 22671047 -128112506 - L2 LINE L2 -167 3146 3019 836 286 35 12 chr11 22671049 22671304 -128112249 + MLT1J LTR MaLR 1 261 -250 1824 294 83 37 chr11 22671324 22672237 -128111316 - L2 LINE L2 -552 2762 1808 320 313 73 10 chr11 22672496 22672592 -128110961 + L2 LINE L2 3205 3306 -7 264 311 104 54 chr11 22672782 22673023 -128110530 + L2 LINE L2 2804 3056 -216 2577 134 3 0 chr11 22674191 22674565 -128108988 + THE1C LTR MaLR 1 375 0 2188 123 171 104 chr11 22674569 22675090 -128108463 + THE1C-int LTR MaLR 5 560 -1091 * 2750 140 4 24 chr11 22675088 22675551 -128108002 + THE1C-int LTR MaLR 1127 1580 0 2367 141 8 11 chr11 22675551 22675927 -128107626 + THE1C LTR MaLR 1 375 0 261 194 68 48 chr11 22676120 22676223 -128107330 + HAL1b LINE L1 767 871 -477 398 261 40 40 chr11 22676617 22676843 -128106710 + L1M4 LINE L1 2147 2372 -3774 393 302 49 35 chr11 22677057 22677342 -128106211 + L1MC4 LINE L1 6814 7102 -940 319 287 14 76 chr11 22678031 22678254 -128105299 + L1MC5 LINE L1 7704 7912 -49 595 285 111 0 chr11 22679328 22679535 -128104018 - MIR SINE MIR -1 261 32 182 211 0 0 chr11 22679537 22679575 -128103978 - MIR SINE MIR -21 241 204 387 234 7 99 chr11 22679582 22679723 -128103830 - L1M4b LINE L1 -5527 1332 1205 486 0 0 0 chr11 22679860 22679914 -128103639 + (TG)n Simple_repeat Simple_repeat 1 54 0 1810 274 133 61 chr11 22680300 22681164 -128102389 - L1M4b LINE L1 -5923 936 11 301 274 89 37 chr11 22681494 22681629 -128101924 - MIR3 SINE MIR -62 146 5 1510 185 67 3 chr11 22682144 22682442 -128101111 + MER89 LTR ERV1 240 556 -3 210 37 0 0 chr11 22682571 22682598 -128100955 + (TTG)n Simple_repeat Simple_repeat 2 28 0 335 270 157 26 chr11 22682703 22682818 -128100735 - MIR3 SINE MIR -48 160 31 277 366 25 6 chr11 22683984 22684145 -128099408 - MIR3 SINE MIR -3 205 42 416 316 32 37 chr11 22684833 22685023 -128098530 - MER5A DNA MER1_type 0 189 1 266 324 36 0 chr11 22685133 22685244 -128098309 - MIR SINE MIR -64 198 84 197 302 0 0 chr11 22685332 22685385 -128098168 - L2 LINE L2 0 3313 3261 818 228 0 0 chr11 22686170 22686332 -128097221 + FRAM SINE Alu 4 165 -11 251 358 11 0 chr11 22686648 22686743 -128096810 + MIR SINE MIR 36 131 -77 261 234 16 16 chr11 22686859 22686923 -128096630 + MIR3 SINE MIR 140 203 -5 234 0 0 0 chr11 22687585 22687611 -128095942 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr11 22687658 22687686 -128095867 + AT_rich Low_complexity Low_complexity 1 28 0 930 279 50 43 chr11 22688684 22689147 -128094406 - MLT1C LTR MaLR -1 466 1 17966 108 48 2 chr11 22689148 22691737 -128091816 + Charlie3 DNA MER1_type 1 2706 -4 181 211 42 99 chr11 22692316 22692387 -128091166 - L3 LINE CR1 -77 1500 1434 207 0 0 0 chr11 22692389 22692412 -128091141 + (T)n Simple_repeat Simple_repeat 1 23 0 263 247 215 11 chr11 22692508 22692601 -128090952 - MER91C DNA MER1_type 0 140 29 240 35 0 0 chr11 22692985 22693014 -128090539 + (TG)n Simple_repeat Simple_repeat 2 30 0 249 314 68 99 chr11 22693190 22693381 -128090172 + L2 LINE L2 2974 3158 -114 517 322 123 0 chr11 22693457 22693668 -128089885 + MIR SINE MIR 5 241 -21 194 129 32 0 chr11 22693707 22693738 -128089815 + L2 LINE L2 3227 3258 -14 196 311 95 0 chr11 22693744 22693818 -128089735 + L2 LINE L2 3009 3089 -183 2598 38 0 22 chr11 22694031 22694349 -128089204 + AluY SINE Alu 1 311 0 315 346 56 49 chr11 22695859 22696021 -128087532 + MIR3 SINE MIR 31 193 -15 583 298 0 0 chr11 22696126 22696267 -128087286 + MIR SINE MIR 6 146 -116 7018 117 5 25 chr11 22696957 22698060 -128085493 + Tigger1 DNA MER2_type 810 1889 -529 442 320 45 11 chr11 22698064 22698242 -128085311 - L1M4b LINE L1 -6192 667 484 970 208 9 5 chr11 22698281 22698497 -128085056 - L1MD1 LINE L1 0 6242 6026 782 208 0 26 chr11 22698511 22698665 -128084888 - AluJb SINE Alu -29 283 134 1963 178 65 16 chr11 22698668 22699101 -128084452 - L1MD1 LINE L1 -262 5980 5527 1479 209 53 70 chr11 22699109 22699306 -128084247 + MLT1B LTR MaLR 1 189 -201 2598 136 35 57 chr11 22699306 22699814 -128083739 + LOR1a LTR ERV1 1 497 0 1479 209 53 70 chr11 22699814 22700013 -128083540 + MLT1B LTR MaLR 189 390 0 1429 227 41 2 chr11 22700015 22700582 -128082971 - L1MD1 LINE L1 -723 5519 4930 1285 291 75 42 chr11 22700615 22701070 -128082483 - L1MDa LINE L1 -5592 948 510 2223 108 90 0 chr11 22701070 22701414 -128082139 + THE1C LTR MaLR 1 375 0 1285 291 75 42 chr11 22701414 22701491 -128082062 - L1MDa LINE L1 -6030 510 16 340 340 6 37 chr11 22701632 22701794 -128081759 + LTR67 LTR ERVL 132 288 -269 2887 3 0 0 chr11 22701889 22702200 -128081353 - AluYa5 SINE Alu 0 311 1 332 269 308 0 chr11 22703190 22703372 -128080181 - MIR SINE MIR 0 262 25 286 246 0 0 chr11 22703711 22703768 -128079785 + MIR SINE MIR 86 142 -66 462 316 0 0 chr11 22704160 22704274 -128079279 + MIR3 SINE MIR 56 169 -39 28 0 0 0 chr11 22704546 22704574 -128078979 + AT_rich Low_complexity Low_complexity 1 28 0 2153 106 10 0 chr11 22704880 22705173 -128078380 - AluSp SINE Alu -17 296 1 21 0 0 0 chr11 22705248 22705269 -128078284 + AT_rich Low_complexity Low_complexity 1 21 0 308 340 63 19 chr11 22705817 22705976 -128077577 + MIR3 SINE MIR 36 201 -7 375 256 53 68 chr11 22708217 22708231 -128075322 - L2 LINE L2 -5 3267 3254 2058 111 0 31 chr11 22708231 22708559 -128074994 - AluSg1 SINE Alu 0 319 1 375 256 53 68 chr11 22708559 22708676 -128074877 - L2 LINE L2 -18 3254 3137 10648 163 23 12 chr11 22708689 22710623 -128072930 - Tigger1 DNA MER2_type -4 2414 459 16183 180 38 15 chr11 22710623 22718419 -128065134 + L1MA2 LINE L1 15 7723 0 2205 175 99 7 chr11 22718436 22718871 -128064682 - Tigger1 DNA MER2_type -1943 475 1 196 180 33 115 chr11 22719378 22719439 -128064114 - MIR SINE MIR -111 151 96 468 322 13 67 chr11 22720151 22720390 -128063163 - MIR SINE MIR -14 248 23 1362 203 50 10 chr11 22721391 22721691 -128061862 + AluJo SINE Alu 1 312 0 826 235 33 80 chr11 22721834 22722136 -128061417 + MER93b LTR ERV1 19 306 -67 453 231 0 22 chr11 22722136 22722318 -128061235 + (TA)n Simple_repeat Simple_repeat 2 179 0 239 154 0 0 chr11 22722318 22722370 -128061183 + MER57A LTR ERV1 347 398 -5 359 323 24 16 chr11 22722428 22722552 -128061001 - MIR SINE MIR -107 155 31 1226 153 201 13 chr11 22722629 22723123 -128060430 - LTR29 LTR ERV1 -2 608 1 313 295 32 21 chr11 22723550 22723645 -128059908 + MIR3 SINE MIR 96 191 -17 266 286 165 30 chr11 22724120 22724253 -128059300 + MIR SINE MIR 46 196 -66 450 296 86 36 chr11 22725381 22725601 -128057952 + MIR SINE MIR 14 244 -18 244 304 72 0 chr11 22725874 22725943 -128057610 + L2 LINE L2 3118 3191 -81 316 178 33 78 chr11 22725952 22726042 -128057511 - MER90 LTR ERV1 -487 88 3 250 43 0 65 chr11 22726050 22726096 -128057457 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 424 333 70 16 chr11 22726136 22726322 -128057231 - MIR SINE MIR -21 241 46 248 348 17 8 chr11 22726898 22727016 -128056537 + L3 LINE CR1 591 709 -868 740 255 72 94 chr11 22728582 22729166 -128054387 - MLT1G LTR MaLR -4 586 16 243 175 0 0 chr11 22729635 22729692 -128053861 + GA-rich Low_complexity Low_complexity 2 58 0 3844 176 80 20 chr11 22730604 22730714 -128052839 - L1MA9 LINE L1 -33 6279 6177 351 44 0 0 chr11 22730714 22730759 -128052794 + (TG)n Simple_repeat Simple_repeat 1 45 0 3844 176 80 20 chr11 22730759 22731489 -128052064 - L1MA9 LINE L1 -135 6177 5389 3745 198 41 32 chr11 22731489 22731623 -128051930 + L1 LINE L1 4028 4159 -1987 189 0 0 0 chr11 22731623 22731644 -128051909 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 3745 198 41 32 chr11 22731644 22732394 -128051159 + L1 LINE L1 4159 4920 -1226 24 53 0 0 chr11 22734480 22734518 -128049035 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr11 22735094 22735122 -128048431 + AT_rich Low_complexity Low_complexity 1 28 0 511 281 8 8 chr11 22735151 22735272 -128048281 - LTR28 LTR ERV1 0 1020 900 530 259 22 52 chr11 22735352 22735584 -128047969 - LTR1 LTR ERV1 -560 225 1 292 164 16 0 chr11 22735586 22735647 -128047906 + L1ME LINE L1 5543 5604 -517 281 299 35 23 chr11 22735687 22735861 -128047692 + L1ME LINE L1 5691 5866 -255 209 355 0 0 chr11 22736113 22736175 -128047378 - L2 LINE L2 0 3272 3211 235 401 58 11 chr11 22736186 22736460 -128047093 - L2 LINE L2 -457 2857 2571 681 259 80 5 chr11 22736854 22737055 -128046498 - MIR SINE MIR 0 262 47 387 325 12 49 chr11 22737170 22737333 -128046220 + MIR3 SINE MIR 2 158 -50 305 206 68 0 chr11 22737486 22737559 -128045994 + MIR SINE MIR 112 189 -73 2251 99 0 7 chr11 22737636 22737938 -128045615 + AluSx SINE Alu 1 300 -12 400 264 22 143 chr11 22738669 22738751 -128044802 + MIR SINE MIR 17 107 -155 1896 146 141 26 chr11 22738751 22739135 -128044418 - MSTA LTR MaLR 0 428 1 400 264 22 143 chr11 22739135 22739325 -128044228 + MIR SINE MIR 107 256 -6 938 196 179 54 chr11 22739341 22739693 -128043860 + MSTD LTR MaLR 1 396 0 193 232 89 0 chr11 22741253 22741309 -128042244 + MIR SINE MIR 89 149 -113 213 329 53 0 chr11 22741326 22741402 -128042151 + MIR SINE MIR 88 167 -95 311 339 94 0 chr11 22742498 22742625 -128040928 + L2 LINE L2 3128 3266 -6 900 60 0 0 chr11 22743143 22743259 -128040294 + AluY SINE Alu 189 304 -7 212 263 158 32 chr11 22743750 22743845 -128039708 - MIR SINE MIR -150 112 6 299 250 9 69 chr11 22744462 22744578 -128038975 - L3 LINE CR1 -180 1397 1289 285 340 10 10 chr11 22744789 22744889 -128038664 - L2 LINE L2 0 3313 3214 798 309 88 26 chr11 22744890 22745275 -128038278 - MLT1I LTR MaLR 0 409 1 219 330 71 93 chr11 22745276 22745458 -128038095 - L2 LINE L2 -97 3175 2998 216 352 28 37 chr11 22745784 22745892 -128037661 - MIR SINE MIR -86 176 70 864 217 121 84 chr11 22749010 22749425 -128034128 - MSTB1 LTR MaLR -2 430 1 563 198 193 5 chr11 22749870 22750062 -128033491 + LTR37B LTR ERV1 198 425 -43 276 190 77 97 chr11 22750933 22751128 -128032425 + MER31-int LTR ERV1 1248 1438 -3498 275 289 109 23 chr11 22751441 22751569 -128031984 - MIR SINE MIR -65 197 59 227 286 92 73 chr11 22752497 22752691 -128030862 + MIR SINE MIR 11 206 -56 1437 153 77 71 chr11 22752983 22753309 -128030244 - MLT1B LTR MaLR -62 328 1 36505 38 1 0 chr11 22754644 22759897 -128023656 - L1PA3 LINE L1 0 6155 901 6730 65 3 10 chr11 22759893 22760784 -128022769 + L1PA3 LINE L1 24 908 -5238 * 460 264 209 7 chr11 22760909 22761057 -128022496 + MER5A DNA MER1_type 4 181 -8 192 143 191 0 chr11 22761759 22761801 -128021752 - L2 LINE L2 0 3313 3264 4259 156 11 18 chr11 22762137 22762851 -128020702 + MER50 LTR ERV1 1 709 -25 1138 300 123 17 chr11 22762920 22763534 -128020019 + L2 LINE L2 2383 3053 -219 566 267 137 58 chr11 22764104 22764396 -128019157 - L2 LINE L2 0 3313 2999 923 168 19 0 chr11 22764501 22764662 -128018891 + FRAM SINE Alu 5 168 -8 332 224 56 47 chr11 22765046 22765153 -128018400 - MIR SINE MIR -65 197 90 221 266 72 0 chr11 22766486 22766593 -128016960 - MIR SINE MIR -43 219 105 286 216 82 31 chr11 22766852 22766949 -128016604 + Tigger3(Golem) DNA MER2_type 5 106 -2923 * 1571 149 23 70 chr11 22766942 22767242 -128016311 + Tigger3(Golem) DNA MER2_type 2277 2555 -473 1853 136 0 0 chr11 22767242 22767507 -128016046 - AluSc SINE Alu -14 295 31 1571 149 23 70 chr11 22767507 22767603 -128015950 + Tigger3(Golem) DNA MER2_type 2555 2654 -374 839 169 22 0 chr11 22767605 22767741 -128015812 + Tigger3(Golem) DNA MER2_type 2889 3027 -2 967 265 16 4 chr11 22768052 22768305 -128015248 + MIR SINE MIR 6 261 -1 210 91 0 0 chr11 22768522 22768555 -128014998 + (GA)n Simple_repeat Simple_repeat 2 34 0 206 286 0 0 chr11 22769530 22769586 -128013967 - L2 LINE L2 -1 3312 3257 339 317 114 0 chr11 22770062 22770185 -128013368 + MIR SINE MIR 126 262 0 242 233 200 0 chr11 22770210 22770300 -128013253 - MIR SINE MIR -152 110 3 12025 157 30 10 chr11 22770825 22772867 -128010686 + L1PA11 LINE L1 3233 5328 -846 312 27 0 0 chr11 22772867 22772904 -128010649 + (CA)n Simple_repeat Simple_repeat 2 38 0 12025 157 30 10 chr11 22772904 22773768 -128009785 + L1PA11 LINE L1 5328 6173 -1 21 0 0 0 chr11 22774279 22774300 -128009253 + AT_rich Low_complexity Low_complexity 1 21 0 248 0 31 0 chr11 22774567 22774599 -128008954 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 27 49 0 0 chr11 22775708 22775749 -128007804 + AT_rich Low_complexity Low_complexity 1 41 0 348 149 15 0 chr11 22775750 22775817 -128007736 - L1MB2 LINE L1 -27 6144 6077 1008 186 33 14 chr11 22775846 22776061 -128007492 - MER20 DNA MER1_type 0 219 1 24 0 0 0 chr11 22776212 22776236 -128007317 + AT_rich Low_complexity Low_complexity 1 24 0 283 231 50 41 chr11 22776943 22777064 -128006489 - HAL1b LINE L1 -886 462 341 23 54 0 0 chr11 22777228 22777265 -128006288 + AT_rich Low_complexity Low_complexity 1 37 0 362 216 0 0 chr11 22777624 22777698 -128005855 - MLT1H LTR MaLR -401 148 75 296 229 12 0 chr11 22779724 22779807 -128003746 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 274 217 0 22 chr11 22779877 22779969 -128003584 + (TA)n Simple_repeat Simple_repeat 2 91 0 703 203 94 9 chr11 22780502 22780714 -128002839 - Charlie1 DNA MER1_type -2 2759 2530 3798 158 5 0 chr11 22780736 22781351 -128002202 - L1PA12 LINE L1 -75 6093 5476 * 42396 33 23 1 chr11 22781346 22787364 -127996189 - L1PA2 LINE L1 -4 6151 1 853 107 7 0 chr11 22787365 22787505 -127996048 - L1PA12 LINE L1 -676 5485 5345 419 319 138 30 chr11 22788194 22788599 -127994954 + L1MC/D LINE L1 2269 2717 -3429 283 376 35 12 chr11 22788601 22788771 -127994782 - LTR16A LTR ERVL -14 436 263 796 281 58 8 chr11 22789020 22789521 -127994032 + L1MC/D LINE L1 2740 3265 -2881 25 51 0 0 chr11 22789586 22789625 -127993928 + AT_rich Low_complexity Low_complexity 1 39 0 1764 171 3 3 chr11 22789807 22790112 -127993441 - AluJb SINE Alu -7 305 1 264 283 90 12 chr11 22790115 22790281 -127993272 + L1MC/D LINE L1 3625 3803 -2343 639 345 132 32 chr11 22790467 22791463 -127992090 + L1MC/D LINE L1 3861 4955 -1191 538 294 68 35 chr11 22791802 22792186 -127991367 + L1MC/D LINE L1 5264 5658 -584 483 246 45 0 chr11 22792335 22792445 -127991108 + MLT1I LTR MaLR 60 174 -235 1850 156 22 62 chr11 22792449 22792852 -127990701 - MLT1B LTR MaLR 0 390 4 718 204 34 6 chr11 22792858 22793034 -127990519 + MER53 DNA DNA 1 181 -8 359 306 14 34 chr11 22793048 22793254 -127990299 + MLT1I LTR MaLR 170 409 0 530 265 147 15 chr11 22793593 22793797 -127989756 - LTR16C LTR ERVL -5 486 256 1777 188 0 0 chr11 22794952 22795250 -127988303 - AluSx SINE Alu -14 298 1 254 303 0 0 chr11 22795251 22795327 -127988226 + MLT1I LTR MaLR 57 132 -277 439 263 35 0 chr11 22795359 22795473 -127988080 + MLT1I LTR MaLR 292 409 0 21 36 0 0 chr11 22795578 22795606 -127987947 + AT_rich Low_complexity Low_complexity 1 28 0 285 252 136 0 chr11 22795774 22795877 -127987676 + MIR SINE MIR 121 237 -25 432 290 122 15 chr11 22795909 22796405 -127987148 + L1MEd LINE L1 988 1629 -861 1917 144 18 15 chr11 22796586 22796919 -127986634 + MER1B DNA MER1_type 3 336 -1 339 342 155 37 chr11 22797083 22797484 -127986069 + L2 LINE L2 2825 3272 0 1019 219 28 41 chr11 22797832 22798256 -127985297 + MLT1D LTR MaLR 1 505 0 371 314 29 71 chr11 22799663 22799803 -127983750 - L2 LINE L2 0 3272 3139 2223 78 3 0 chr11 22800016 22800311 -127983242 - L1PA7 LINE L1 0 6154 5859 4225 99 0 0 chr11 22800311 22800906 -127982647 + L1P LINE L1 1918 2512 -3634 185 304 41 94 chr11 22801341 22801512 -127982041 - L2 LINE L2 -189 3083 2922 642 209 11 50 chr11 22801801 22801983 -127981570 + MER53 DNA DNA 15 189 0 1866 287 18 40 chr11 22802424 22802856 -127980697 + L1M4 LINE L1 313 728 -5814 1939 141 50 0 chr11 22802856 22803153 -127980400 + AluSx SINE Alu 1 312 0 1866 287 18 40 chr11 22803153 22803341 -127980212 + L1M4 LINE L1 728 919 -5623 182 88 0 29 chr11 22803345 22803379 -127980174 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 34537 113 16 9 chr11 22803379 22809457 -127974096 - L1PA7 LINE L1 -24 6130 11 266 296 0 10 chr11 22809480 22809578 -127973975 + L1M4 LINE L1 948 1044 -5498 2506 265 23 18 chr11 22809581 22810082 -127973471 + L1M4 LINE L1 1128 1625 -5019 379 58 0 0 chr11 22810082 22810134 -127973419 + L1PA13 LINE L1 6108 6159 -4 2506 265 23 18 chr11 22810134 22810575 -127972978 + L1M4 LINE L1 1625 2133 -4511 1398 179 34 2 chr11 22811147 22811539 -127972014 + L1PA13 LINE L1 2043 2458 -4339 1041 92 26 13 chr11 22811550 22811703 -127971850 + AluSg/x SINE Alu 155 309 0 663 235 36 0 chr11 22811704 22811915 -127971638 + L1P LINE L1 4749 4968 -1178 3143 180 49 21 chr11 22911965 22912675 -127870878 + L1MB5 LINE L1 5411 6140 -34 2180 117 0 0 chr11 22912677 22912975 -127870578 + AluSx SINE Alu 1 298 -14 330 186 152 21 chr11 22913022 22913167 -127870386 + L1MB8 LINE L1 5824 5987 -191 660 9 37 28 chr11 22913543 22913650 -127869903 + (TAGA)n Simple_repeat Simple_repeat 4 111 0 1218 183 7 121 chr11 22913698 22913742 -127869811 + MER21-int LTR ERV1 464 511 -7026 1886 139 38 0 chr11 22913742 22914029 -127869524 - AluSg SINE Alu -12 298 1 1218 183 7 121 chr11 22914029 22914415 -127869138 + MER21-int LTR ERV1 511 845 -6692 623 235 19 12 chr11 22914519 22914681 -127868872 + MER21-int LTR ERV1 857 1019 -4104 230 98 295 0 chr11 22914820 22914881 -127868672 + MER67D LTR ERV1 128 206 -308 818 270 61 24 chr11 22914890 22915186 -127868367 + MER21-int LTR ERV1 1260 4467 -2291 1512 158 124 17 chr11 22915282 22915637 -127867916 - LTR54B LTR ERV1 -2 496 104 222 250 105 13 chr11 22915725 22915801 -127867752 + MIR3 SINE MIR 87 169 -39 377 96 0 0 chr11 22915980 22916032 -127867521 - MLT1B LTR MaLR 0 390 339 574 141 0 0 chr11 22916054 22916139 -127867414 - FLAM_C SINE Alu -24 119 35 1255 185 80 22 chr11 22916142 22916466 -127867087 - MLT1B LTR MaLR -47 343 1 21 95 0 0 chr11 22916691 22916754 -127866799 + AT_rich Low_complexity Low_complexity 1 63 0 200 333 86 12 chr11 22917827 22917908 -127865645 + L2 LINE L2 3195 3281 -32 367 202 53 32 chr11 22917913 22918007 -127865546 - MIR SINE MIR -130 132 37 1542 143 108 21 chr11 22918021 22918308 -127865245 - AluJb SINE Alu 0 312 1 28 0 0 0 chr11 22918460 22918488 -127865065 + AT_rich Low_complexity Low_complexity 1 28 0 1492 203 9 29 chr11 22919031 22919346 -127864207 - AluJb SINE Alu -3 309 1 639 202 0 16 chr11 22919445 22919611 -127863942 - FLAM_C SINE Alu 0 180 17 1875 95 19 8 chr11 22920889 22921151 -127862402 - AluSx SINE Alu -7 305 41 313 325 106 12 chr11 22921191 22921351 -127862202 + L1M4 LINE L1 4039 4213 -1933 278 206 40 119 chr11 22921910 22922036 -127861517 + MIR SINE MIR 134 249 -13 689 266 119 52 chr11 22922374 22922896 -127860657 - L2 LINE L2 -129 3184 1253 * 968 167 52 23 chr11 22922872 22923046 -127860507 + MER5A DNA MER1_type 11 189 0 391 268 86 5 chr11 22923046 22923224 -127860329 - L2 LINE L2 -2028 1286 996 2543 232 98 32 chr11 22923230 22924261 -127859292 + L1M4 LINE L1 2960 4058 -2088 327 280 73 86 chr11 22924285 22924517 -127859036 - L2 LINE L2 0 3272 3044 1240 131 0 0 chr11 22924519 22924694 -127858859 - AluSg/x SINE Alu -4 308 134 2501 61 3 0 chr11 22924694 22924988 -127858565 - AluSx SINE Alu -12 300 6 296 287 37 9 chr11 22924992 22925100 -127858453 + MLT1A1 LTR MaLR 72 182 -183 644 185 47 65 chr11 22925126 22925328 -127858225 + MLT1A1 LTR MaLR 168 396 0 194 274 20 0 chr11 22925926 22925977 -127857576 - MER5B DNA MER1_type 0 178 127 288 263 22 73 chr11 22926000 22926137 -127857416 - MER5B DNA MER1_type 0 178 49 2156 92 7 14 chr11 22926278 22926560 -127856993 - AluSg SINE Alu -28 282 3 1114 180 35 5 chr11 22926807 22927007 -127856546 - AluJb SINE Alu -106 206 1 806 216 103 66 chr11 22927244 22927563 -127855990 + L1ME3A LINE L1 5424 5754 -416 404 208 114 25 chr11 22927784 22927972 -127855581 + MLT1H1 LTR MaLR 341 545 -4 1401 207 42 30 chr11 22927975 22928381 -127855172 + L1ME3A LINE L1 5760 6170 0 914 164 32 50 chr11 22928849 22928981 -127854572 - L1MD2 LINE L1 -27 6332 6204 1937 158 15 55 chr11 22928981 22929385 -127854168 + MLT1B LTR MaLR 3 390 0 914 164 32 50 chr11 22929385 22929472 -127854081 - L1MD2 LINE L1 -155 6204 6117 654 158 151 0 chr11 22930420 22930559 -127852994 - L1MA5 LINE L1 0 6300 6141 547 264 0 0 chr11 22930973 22931094 -127852459 - FLAM_A SINE Alu -14 128 8 585 64 43 0 chr11 22931486 22931580 -127851973 + (GAAA)n Simple_repeat Simple_repeat 2 99 0 220 436 17 12 chr11 22932027 22932199 -127851354 - MIR3 SINE MIR -12 196 24 338 266 292 0 chr11 22932207 22932320 -127851233 + MER5A DNA MER1_type 4 149 -40 234 319 118 0 chr11 22932360 22932479 -127851074 + MIR SINE MIR 74 206 -56 29 60 0 0 chr11 22934444 22934494 -127849059 + AT_rich Low_complexity Low_complexity 1 50 0 251 330 0 21 chr11 22934662 22934756 -127848797 + CT-rich Low_complexity Low_complexity 1 92 0 360 0 0 0 chr11 22936214 22936254 -127847299 + (TG)n Simple_repeat Simple_repeat 2 41 0 552 80 53 0 chr11 22936463 22936576 -127846977 + (TA)n Simple_repeat Simple_repeat 2 120 0 206 256 122 0 chr11 22939335 22939417 -127844136 + MIR SINE MIR 109 200 -62 402 38 0 0 chr11 22942038 22942091 -127841462 - L1M1 LINE L1 -510 5795 5743 22 0 0 0 chr11 22942571 22942593 -127840960 + AT_rich Low_complexity Low_complexity 1 22 0 1257 111 6 0 chr11 22942684 22942856 -127840697 - AluSc SINE Alu -14 295 123 24 32 0 0 chr11 22943193 22943224 -127840329 + AT_rich Low_complexity Low_complexity 1 31 0 231 88 35 18 chr11 22944174 22944231 -127839322 + (TA)n Simple_repeat Simple_repeat 2 59 0 433 301 116 9 chr11 22944361 22944577 -127838976 + L2 LINE L2 3057 3295 -18 473 333 81 5 chr11 22944635 22944833 -127838720 + MIR SINE MIR 29 241 -21 407 215 168 0 chr11 22945409 22945516 -127838037 - MIR3 SINE MIR -34 174 50 26 0 0 0 chr11 22946139 22946165 -127837388 + AT_rich Low_complexity Low_complexity 1 26 0 267 114 0 0 chr11 22946398 22946442 -127837111 + (CA)n Simple_repeat Simple_repeat 2 45 0 33 80 0 0 chr11 22948336 22948411 -127835142 + AT_rich Low_complexity Low_complexity 1 75 0 24 0 0 0 chr11 22948442 22948466 -127835087 + AT_rich Low_complexity Low_complexity 1 24 0 750 234 14 47 chr11 22948608 22948822 -127834731 - L1PB4 LINE L1 0 6156 5950 245 281 116 16 chr11 22948823 22948944 -127834609 - MIR SINE MIR -98 164 32 21 57 0 0 chr11 22949381 22949416 -127834137 + AT_rich Low_complexity Low_complexity 1 35 0 438 293 83 33 chr11 22950498 22950679 -127832874 - MIR SINE MIR 0 262 73 279 0 0 0 chr11 22950715 22950746 -127832807 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 201 204 57 102 chr11 22950796 22950884 -127832669 - MIR SINE MIR -126 136 53 590 244 99 0 chr11 22951259 22951431 -127832122 + MER5A DNA MER1_type 1 189 0 2369 99 0 0 chr11 22951447 22951751 -127831802 - AluSq SINE Alu -8 305 2 262 336 53 15 chr11 22952089 22952220 -127831333 + MIR SINE MIR 57 192 -70 197 340 10 62 chr11 22952305 22952402 -127831151 - MIR SINE MIR -26 236 145 767 233 157 0 chr11 22952411 22952621 -127830932 - MIR SINE MIR -8 254 12 233 345 35 23 chr11 22952635 22952722 -127830831 - MIR SINE MIR -67 141 54 516 267 130 6 chr11 22953396 22953557 -127829996 + MIR SINE MIR 20 200 -62 1723 169 0 4 chr11 22953923 22954196 -127829357 + AluSx SINE Alu 3 274 -38 246 250 16 147 chr11 22954518 22954702 -127828851 + MIR SINE MIR 90 249 -13 986 223 5 15 chr11 22954761 22954963 -127828590 + MER20 DNA MER1_type 16 215 -4 1834 131 3 28 chr11 22955683 22956002 -127827551 - AluSg SINE Alu 0 312 1 347 260 83 62 chr11 22956336 22956528 -127827025 - L2 LINE L2 0 3313 3118 2590 95 11 5 chr11 22957502 22957870 -127825683 + L1PA10 LINE L1 5799 6168 0 339 270 90 28 chr11 22958416 22958627 -127824926 - L1M4 LINE L1 -2583 3563 3340 24 32 0 0 chr11 22958744 22958775 -127824778 + AT_rich Low_complexity Low_complexity 1 31 0 29 28 0 0 chr11 22958871 22958907 -127824646 + AT_rich Low_complexity Low_complexity 1 36 0 193 263 141 30 chr11 22961529 22961628 -127821925 + MIR SINE MIR 120 229 -33 391 317 115 0 chr11 22961683 22961866 -127821687 - MIR SINE MIR -12 250 47 246 300 154 9 chr11 22962530 22962640 -127820913 + L2 LINE L2 3188 3313 0 1261 151 168 7 chr11 22963434 22963725 -127819828 - MER44D DNA MER2_type 0 609 2 26 64 0 0 chr11 22963816 22963863 -127819690 + AT_rich Low_complexity Low_complexity 1 47 0 2268 92 7 7 chr11 22964092 22964396 -127819157 + AluSx SINE Alu 1 304 -8 327 244 85 80 chr11 22965327 22965728 -127817825 - L1MC5 LINE L1 -52 7909 7507 252 289 91 0 chr11 22965739 22965860 -127817693 - L1ME3A LINE L1 -12 6158 6027 302 306 71 20 chr11 22967733 22967831 -127815722 - L2 LINE L2 -32 3240 3138 244 363 177 0 chr11 22968046 22968159 -127815394 - L2 LINE L2 0 3272 3140 204 343 27 0 chr11 22968530 22968603 -127814950 - L2 LINE L2 0 3272 3198 271 289 24 84 chr11 22969237 22969403 -127814150 + MIR SINE MIR 4 159 -103 219 139 0 0 chr11 22969737 22969773 -127813780 + (TA)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr11 22971065 22971086 -127812467 + AT_rich Low_complexity Low_complexity 1 21 0 1007 94 0 0 chr11 22972459 22972586 -127810967 + AluSg SINE Alu 1 127 -183 2441 246 33 22 chr11 22972833 22973852 -127809701 + L1M4 LINE L1 3475 4600 -1546 776 121 0 26 chr11 22973915 22974031 -127809522 + AluJb SINE Alu 14 126 -186 453 76 0 0 chr11 22974045 22974111 -127809442 + (GA)n Simple_repeat Simple_repeat 2 67 0 839 170 0 0 chr11 22974171 22974306 -127809247 + FLAM_C SINE Alu 6 140 -3 1010 244 44 4 chr11 22974696 22974925 -127808628 + MIR SINE MIR 6 243 -19 2068 100 4 4 chr11 22975250 22975558 -127807995 - AluSg SINE Alu 0 308 1 4558 168 35 7 chr11 22976174 22976985 -127806568 - Ricksha DNA DNA -1091 955 123 396 230 98 46 chr11 22976994 22977168 -127806385 - MLT1J LTR MaLR -328 183 1 660 146 49 24 chr11 22977210 22977333 -127806220 + FLAM_C SINE Alu 5 130 -3 269 36 54 36 chr11 22977342 22977398 -127806155 + (TAAAAA)n Simple_repeat Simple_repeat 4 60 0 209 243 126 78 chr11 22977547 22977650 -127805903 - MIR3 SINE MIR -87 121 14 191 36 36 0 chr11 22977857 22977885 -127805668 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 2011 127 16 19 chr11 22979133 22979441 -127804112 + AluSx SINE Alu 3 309 -3 234 0 0 0 chr11 22980836 22980862 -127802691 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2045 97 7 4 chr11 22981174 22981452 -127802101 - AluSp SINE Alu -5 308 30 261 243 43 0 chr11 22981860 22981930 -127801623 - MIR3 SINE MIR -16 192 120 391 358 68 27 chr11 22981959 22982107 -127801446 + L2 LINE L2 3104 3257 -15 195 42 0 0 chr11 22982112 22982136 -127801417 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 23 33 0 0 chr11 22982503 22982533 -127801020 + AT_rich Low_complexity Low_complexity 1 30 0 228 318 171 35 chr11 22983066 22983588 -127799965 - L2 LINE L2 -345 2969 2377 1632 145 42 19 chr11 22983601 22983863 -127799690 - AluJo SINE Alu -24 288 21 2048 105 28 3 chr11 22984084 22984370 -127799183 - AluSx SINE Alu -9 303 11 352 331 53 93 chr11 22984605 22985194 -127798359 - L2 LINE L2 -1098 2216 1605 368 297 216 0 chr11 22985194 22985342 -127798211 + MER5A DNA MER1_type 10 189 0 352 331 53 93 chr11 22985342 22985896 -127797657 - L2 LINE L2 -1709 1605 977 995 167 18 0 chr11 22985995 22986163 -127797390 - FAM SINE Alu -4 171 1 2031 132 3 0 chr11 22986246 22986533 -127797020 + AluSq SINE Alu 3 290 -23 28 0 0 0 chr11 22986533 22986561 -127796992 + AT_rich Low_complexity Low_complexity 1 28 0 637 206 30 0 chr11 22986794 22986925 -127796628 + FRAM SINE Alu 38 172 -4 326 243 44 29 chr11 22987369 22987505 -127796048 + L1M4c LINE L1 2322 2459 -3925 2264 103 0 0 chr11 22987556 22987858 -127795695 + AluJb SINE Alu 1 302 -10 2065 93 21 0 chr11 22988492 22988781 -127794772 - AluSx SINE Alu -17 295 1 21 57 0 0 chr11 22989513 22989548 -127794005 + AT_rich Low_complexity Low_complexity 1 35 0 1767 124 55 68 chr11 22989775 22989846 -127793707 - THE1C LTR MaLR 0 375 305 2137 77 6 49 chr11 22989846 22990171 -127793382 + AluY SINE Alu 1 311 0 1767 124 55 68 chr11 22990171 22990479 -127793074 - THE1C LTR MaLR -70 305 1 755 235 18 12 chr11 22990546 22990712 -127792841 + MIR SINE MIR 1 167 -95 252 265 88 52 chr11 22990858 22991097 -127792456 - L1MC/D LINE L1 -795 5351 5279 2235 111 3 3 chr11 22991097 22991404 -127792149 - AluSq SINE Alu -6 307 1 252 265 88 52 chr11 22991404 22991515 -127792038 - L1MC/D LINE L1 -867 5279 5173 5198 140 34 12 chr11 22991531 22992436 -127791117 - L1MA8 LINE L1 -3 6288 5364 338 213 0 0 chr11 22992931 22992992 -127790561 - MER58 DNA MER1_type -6 2414 2354 274 209 143 11 chr11 22993071 22993162 -127790391 + L1M4 LINE L1 4779 4881 -1265 821 152 28 7 chr11 22993201 22993346 -127790207 + FRAM SINE Alu 6 153 -23 610 159 138 0 chr11 22994065 22994254 -127789299 + AluJo SINE Alu 4 218 -94 743 184 77 0 chr11 22994889 22995057 -127788496 - MER3 DNA MER1_type -28 181 1 641 120 0 0 chr11 22995115 22995215 -127788338 + L1MB3 LINE L1 6077 6176 -7 216 0 0 0 chr11 22996200 22996224 -127787329 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1318 139 0 5 chr11 22996230 22996417 -127787136 - AluJb SINE Alu -42 270 85 2098 89 11 3 chr11 22997398 22997680 -127785873 + AluSp SINE Alu 1 284 -29 282 167 42 14 chr11 22997704 22997776 -127785777 + HAL1 LINE L1 1566 1639 -868 277 296 50 22 chr11 22997942 22998121 -127785432 + L1M4 LINE L1 2669 2852 -3294 1705 171 3 18 chr11 22998155 22998441 -127785112 + AluJo SINE Alu 1 282 -30 225 0 0 0 chr11 22998445 22998470 -127785083 + (CAA)n Simple_repeat Simple_repeat 2 26 0 26 64 0 0 chr11 22998563 22998610 -127784943 + AT_rich Low_complexity Low_complexity 1 47 0 238 226 0 97 chr11 22998739 22998832 -127784721 - L2 LINE L2 -9 3263 3180 261 320 0 14 chr11 23000427 23000506 -127783047 + AluS SINE Alu 3 70 -232 25 0 0 0 chr11 23001333 23001358 -127782195 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr11 23001863 23001898 -127781655 + AT_rich Low_complexity Low_complexity 1 35 0 486 312 78 55 chr11 23002009 23002496 -127781057 - L1M4 LINE L1 -913 5233 4736 248 221 13 0 chr11 23003224 23003301 -127780252 + (TA)n Simple_repeat Simple_repeat 2 79 0 2247 114 0 0 chr11 23003355 23003661 -127779892 + AluSx SINE Alu 3 308 -4 21 0 0 0 chr11 23003897 23003918 -127779635 + AT_rich Low_complexity Low_complexity 1 21 0 800 299 33 5 chr11 23003939 23004150 -127779403 + MIR SINE MIR 34 250 -12 315 225 0 42 chr11 23004270 23004341 -127779212 + MER5A DNA MER1_type 12 79 -110 1575 73 14 5 chr11 23005020 23005239 -127778314 + L1MA2 LINE L1 6084 6304 0 203 228 70 18 chr11 23005722 23005779 -127777774 + L2 LINE L2 3209 3268 -4 269 219 44 37 chr11 23005796 23005889 -127777664 + MER5A DNA MER1_type 87 189 0 636 254 11 38 chr11 23005917 23006102 -127777451 + LTR67 LTR ERVL 10 189 -368 648 304 76 19 chr11 23006109 23006478 -127777075 + L1ME LINE L1 5412 5801 -361 780 116 23 23 chr11 23006796 23006925 -127776628 + FRAM SINE Alu 29 157 -19 656 298 69 5 chr11 23006969 23007187 -127776366 + MIR SINE MIR 7 238 -24 29 0 0 0 chr11 23007983 23008012 -127775541 + AT_rich Low_complexity Low_complexity 1 29 0 2225 113 3 0 chr11 23008078 23008387 -127775166 - AluSp SINE Alu -3 310 1 186 71 0 0 chr11 23008436 23008464 -127775089 + (TTA)n Simple_repeat Simple_repeat 1 28 0 247 258 0 0 chr11 23008470 23008532 -127775021 - L1ME LINE L1 -469 5652 5591 360 359 6 18 chr11 23012420 23012587 -127770966 - MIR SINE MIR -8 254 90 215 378 40 0 chr11 23012780 23012928 -127770625 - MIR3 SINE MIR -1 207 54 869 207 6 0 chr11 23013226 23013390 -127770163 + FAM SINE Alu 2 166 -9 459 241 107 83 chr11 23013833 23014207 -127769346 - L1ME4a LINE L1 -72 6049 5667 220 241 184 35 chr11 23014379 23014466 -127769087 - L2 LINE L2 0 3272 3173 22 35 0 0 chr11 23015556 23015585 -127767968 + AT_rich Low_complexity Low_complexity 1 29 0 310 200 0 25 chr11 23015617 23015697 -127767856 - L1MC4 LINE L1 -1350 6692 6615 798 285 20 0 chr11 23015734 23015934 -127767619 - MIR SINE MIR -58 204 1 212 250 75 122 chr11 23015936 23015973 -127767580 + MIR SINE MIR 73 110 -152 2184 37 81 0 chr11 23015973 23016244 -127767309 + AluY SINE Alu 1 293 -18 212 250 75 122 chr11 23016244 23016394 -127767159 + MIR SINE MIR 110 251 -11 23 0 0 0 chr11 23016589 23016612 -127766941 + AT_rich Low_complexity Low_complexity 1 23 0 331 331 116 29 chr11 23017282 23017454 -127766099 + MIR3 SINE MIR 16 202 -6 2021 109 35 3 chr11 23017900 23018184 -127765369 - AluSg SINE Alu -17 293 1 311 258 56 11 chr11 23018185 23018274 -127765279 - MIR SINE MIR -66 142 50 400 369 41 73 chr11 23018352 23018721 -127764832 - L2 LINE L2 -11 3261 2905 375 311 129 8 chr11 23018866 23018998 -127764555 - L2 LINE L2 0 3272 3125 235 265 125 80 chr11 23019103 23019303 -127764250 + L2 LINE L2 3104 3312 -1 201 25 25 50 chr11 23020199 23020239 -127763314 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 278 349 64 0 chr11 23020601 23020710 -127762843 + MIR SINE MIR 77 192 -70 204 32 32 81 chr11 23021338 23021400 -127762153 + (TTA)n Simple_repeat Simple_repeat 2 60 0 1863 203 84 18 chr11 23021554 23021992 -127761561 - MLT1C LTR MaLR 0 467 1 353 387 7 0 chr11 23023022 23023159 -127760394 - MER91A DNA MER1_type -38 158 21 551 275 108 14 chr11 23023317 23023539 -127760014 - MER102b DNA MER1_type -3 338 96 827 85 0 0 chr11 23023539 23023645 -127759908 - AluY SINE Alu -7 304 199 207 100 20 40 chr11 23024018 23024068 -127759485 + (TATG)n Simple_repeat Simple_repeat 4 52 0 205 250 80 0 chr11 23024158 23024246 -127759307 - L2 LINE L2 -192 3121 3027 942 113 0 0 chr11 23024252 23024394 -127759159 + (TA)n Simple_repeat Simple_repeat 2 143 0 2105 122 3 0 chr11 23024401 23024687 -127758866 - AluSp SINE Alu -26 287 1 1881 193 47 34 chr11 23024688 23025230 -127758323 + MLT2A2 LTR ERVL 4 554 0 352 212 82 0 chr11 23025237 23025322 -127758231 - LTR16A1 LTR ERVL -2 455 364 1144 335 69 13 chr11 23025324 23025877 -127757676 - L2 LINE L2 -665 2649 2066 378 309 32 0 chr11 23026493 23026616 -127756937 - L2 LINE L2 -1303 2011 1885 253 61 0 0 chr11 23026955 23026988 -127756565 - U2 snRNA snRNA -155 33 1 307 405 8 0 chr11 23027887 23028018 -127755535 - MLT1K LTR MaLR -373 215 84 1034 309 51 24 chr11 23028413 23028824 -127754729 + MLT1J2 LTR MaLR 24 445 -5 22 35 0 0 chr11 23028871 23028900 -127754653 + AT_rich Low_complexity Low_complexity 1 29 0 323 318 128 9 chr11 23029508 23029873 -127753680 - MLT1J LTR MaLR -54 457 13 417 264 18 0 chr11 23031127 23031237 -127752316 + MIR SINE MIR 148 259 -3 998 279 38 62 chr11 23032028 23032476 -127751077 - LTR33 LTR ERVL -6 515 79 399 259 94 41 chr11 23033362 23033532 -127750021 - MLT1H LTR MaLR -370 179 1 350 349 79 0 chr11 23033638 23033790 -127749763 - L2 LINE L2 -498 2816 2653 767 286 39 52 chr11 23033891 23034297 -127749256 - L1ME3 LINE L1 -2 6160 5760 284 209 58 0 chr11 23034333 23034419 -127749134 - L1ME3 LINE L1 -852 5294 5204 777 288 76 17 chr11 23034449 23034615 -127748938 + L1M4 LINE L1 4481 4636 -1510 2436 69 3 0 chr11 23034615 23034918 -127748635 + AluY SINE Alu 1 304 -7 777 288 76 17 chr11 23034918 23035157 -127748396 + L1M4 LINE L1 4636 4910 -1236 29 60 0 0 chr11 23035273 23035323 -127748230 + AT_rich Low_complexity Low_complexity 1 50 0 943 213 85 8 chr11 23035365 23035485 -127748068 + L1MA9 LINE L1 6029 6138 -174 213 39 0 0 chr11 23035485 23035511 -127748042 + (CA)n Simple_repeat Simple_repeat 1 26 0 943 213 85 8 chr11 23035511 23035648 -127747905 + L1MA9 LINE L1 6138 6306 -6 217 330 19 39 chr11 23035662 23035765 -127747788 - L2 LINE L2 -850 2464 2364 437 287 39 33 chr11 23036771 23036952 -127746601 + L2 LINE L2 3132 3313 0 5759 114 4 6 chr11 23037582 23038814 -127744739 + L1PA10 LINE L1 4838 6066 -102 22 0 0 0 chr11 23038814 23038836 -127744717 + AT_rich Low_complexity Low_complexity 1 22 0 871 49 0 49 chr11 23038966 23039088 -127744465 + L1PA10 LINE L1 6053 6168 0 1681 192 50 18 chr11 23039157 23039538 -127744015 + LTR52 LTR ERVL 3 395 -26 203 133 0 0 chr11 23039557 23039587 -127743966 + (GA)n Simple_repeat Simple_repeat 2 31 0 189 0 0 0 chr11 23040411 23040432 -127743121 + (A)n Simple_repeat Simple_repeat 1 21 0 14259 184 30 24 chr11 23041166 23041987 -127741566 + L1MA8 LINE L1 3009 3823 -3887 1796 187 14 14 chr11 23041987 23042335 -127741218 + MER7A DNA MER2_type 1 346 0 14259 184 30 24 chr11 23042335 23044219 -127739334 + L1MA8 LINE L1 3823 5694 -2016 1600 189 20 23 chr11 23044219 23044521 -127739032 - AluJo SINE Alu -10 302 2 14259 184 30 24 chr11 23044521 23045158 -127738395 + L1MA8 LINE L1 5694 6325 -1385 2519 46 0 43 chr11 23045158 23045483 -127738070 + AluY SINE Alu 1 311 0 14259 184 30 24 chr11 23045483 23046773 -127736780 + L1MA8 LINE L1 6325 7707 -3 24 32 0 0 chr11 23046844 23046875 -127736678 + AT_rich Low_complexity Low_complexity 1 31 0 320 329 92 65 chr11 23047405 23047776 -127735777 - L2 LINE L2 0 3272 2892 * 510 266 85 11 chr11 23047744 23047927 -127735626 + MIR SINE MIR 16 212 -50 22 0 0 0 chr11 23048427 23048449 -127735104 + AT_rich Low_complexity Low_complexity 1 22 0 418 333 70 9 chr11 23048468 23048681 -127734872 - MIR SINE MIR -27 235 10 1308 202 29 40 chr11 23049566 23049843 -127733710 + AluJb SINE Alu 1 274 -38 189 0 0 0 chr11 23049844 23049865 -127733688 + (TC)n Simple_repeat Simple_repeat 1 21 0 346 239 0 23 chr11 23049870 23049958 -127733595 - L1MC4 LINE L1 -1339 6703 6618 2202 97 3 7 chr11 23049960 23050327 -127733226 - AluY SINE Alu 0 311 1 234 311 19 57 chr11 23050770 23050876 -127732677 + MIR SINE MIR 79 180 -82 495 276 49 12 chr11 23050878 23051041 -127732512 + MER69A DNA AcHobo 2 170 -7 510 61 0 0 chr11 23051078 23051144 -127732409 + (CA)n Simple_repeat Simple_repeat 2 67 0 185 0 40 0 chr11 23051148 23051173 -127732380 + (GA)n Simple_repeat Simple_repeat 2 27 0 633 186 0 0 chr11 23051175 23051277 -127732276 - MLT2C1 LTR ERVL -62 335 234 3259 192 54 70 chr11 23051284 23051761 -127731792 - L1MA9 LINE L1 -38 6274 5816 513 58 0 0 chr11 23051761 23051830 -127731723 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 3259 192 54 70 chr11 23051830 23052258 -127731295 - L1MA9 LINE L1 -496 5816 5383 2652 200 93 7 chr11 23052261 23052937 -127730616 + L1MA9 LINE L1 4653 5386 -760 1576 206 16 6 chr11 23052937 23053248 -127730305 - MLT2C2 LTR ERVL -150 314 1 35 0 0 0 chr11 23053415 23053450 -127730103 + AT_rich Low_complexity Low_complexity 1 35 0 187 296 19 0 chr11 23054619 23054673 -127728880 - MIR3 SINE MIR -24 184 130 338 219 134 0 chr11 23055003 23055085 -127728468 + MIR3 SINE MIR 108 200 -8 244 298 76 46 chr11 23057262 23057393 -127726160 - L2 LINE L2 0 3313 3179 227 167 37 74 chr11 23058530 23058584 -127724969 - LTR67 LTR ERVL -2 555 504 472 211 18 9 chr11 23058602 23058716 -127724837 - L1MB8 LINE L1 -9 6169 6055 378 265 31 0 chr11 23059591 23059689 -127723864 + L3 LINE CR1 1472 1572 -5 3572 68 12 1 chr11 23060177 23060888 -127722665 - L1PA7 LINE L1 -544 5610 4896 4180 65 2 0 chr11 23060890 23061425 -127722128 + L1PA7 LINE L1 5618 6153 -1 368 339 174 26 chr11 23062099 23062403 -127721150 - L2 LINE L2 -6 3266 2918 393 244 81 116 chr11 23062455 23062627 -127720926 + MIR SINE MIR 11 176 -86 372 276 65 28 chr11 23063411 23063625 -127719928 - L1ME4a LINE L1 -187 5934 5713 23 0 0 0 chr11 23064207 23064230 -127719323 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr11 23064914 23064934 -127718619 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 247 310 23 54 chr11 23066202 23066331 -127717222 - MIR3 SINE MIR -3 205 81 1097 214 136 9 chr11 23066417 23066763 -127716790 - Charlie1 DNA MER1_type -4 2757 2368 1459 178 94 12 chr11 23066863 23067183 -127716370 + MER63 DNA MER1_type 672 1017 -45 2612 93 11 0 chr11 23067187 23067562 -127715991 - L1PA10 LINE L1 -499 5632 5254 3750 76 18 0 chr11 23067562 23068061 -127715492 + L1PA10 LINE L1 5656 6164 -4 1915 85 0 35 chr11 23068065 23068416 -127715137 + AluY SINE Alu 35 376 0 1264 197 38 65 chr11 23068638 23069091 -127714462 - MLT1A1 LTR MaLR -3 362 1 206 280 0 0 chr11 23069475 23069525 -127714028 - L2 LINE L2 -2 3311 3262 394 285 23 46 chr11 23070489 23070619 -127712934 + MIR SINE MIR 15 141 -121 552 245 31 46 chr11 23070624 23070820 -127712733 - L2 LINE L2 -1 3312 3120 5709 193 98 22 chr11 23070822 23071117 -127712436 - Charlie1a DNA MER1_type -1310 1451 1180 1490 200 10 13 chr11 23071117 23071417 -127712136 + AluJb SINE Alu 11 309 -3 5709 193 98 22 chr11 23071417 23072205 -127711348 - Charlie1a DNA MER1_type -1581 1180 244 4254 58 0 0 chr11 23072205 23072735 -127710818 - L1PA7 LINE L1 0 6154 5625 5709 193 98 22 chr11 23072735 23072999 -127710554 - Charlie1a DNA MER1_type -2517 244 1 504 269 120 41 chr11 23073042 23073284 -127710269 - L2 LINE L2 -229 3084 2824 257 236 136 45 chr11 23073271 23073381 -127710172 + MIR SINE MIR 132 251 -11 * 338 321 77 84 chr11 23073935 23074222 -127709331 - L2 LINE L2 0 3272 2988 1563 183 24 154 chr11 23074224 23074815 -127708738 - MER67D LTR ERV1 0 514 1 363 386 6 12 chr11 23074923 23075086 -127708467 - MIR SINE MIR -88 174 13 797 234 19 31 chr11 23075410 23075666 -127707887 - L1ME2 LINE L1 -19 6145 5893 1754 190 25 0 chr11 23075678 23076004 -127707549 + MLT2C1 LTR ERVL 5 338 -59 1302 239 75 11 chr11 23076012 23076412 -127707141 - L1ME2 LINE L1 -418 5746 5321 2259 110 0 7 chr11 23077651 23077952 -127705601 - AluSc SINE Alu -10 299 1 325 320 112 39 chr11 23078536 23078878 -127704675 - L2 LINE L2 -221 3051 2685 676 296 64 20 chr11 23078920 23079170 -127704383 - MIR SINE MIR 0 262 2 720 263 31 31 chr11 23079176 23079431 -127704122 - MIR SINE MIR -3 259 5 238 333 63 42 chr11 23079431 23079620 -127703933 - L2 LINE L2 -665 2649 2457 1281 247 183 25 chr11 23079650 23080041 -127703512 - MLT1F1 LTR MaLR 0 567 88 2206 124 11 14 chr11 23080041 23080397 -127703156 - THE1A LTR MaLR 0 355 1 1281 247 183 25 chr11 23080397 23080499 -127703054 - MLT1F1 LTR MaLR -479 88 3 639 267 53 77 chr11 23081457 23081704 -127701849 + MIR SINE MIR 12 252 -10 234 62 0 0 chr11 23081709 23081741 -127701812 + (CAT)n Simple_repeat Simple_repeat 3 34 0 1285 257 80 21 chr11 23081972 23082408 -127701145 + MLT1C LTR MaLR 6 467 0 194 341 84 70 chr11 23082482 23082840 -127700713 + L2 LINE L2 2910 3272 0 24 77 0 0 chr11 23083907 23083959 -127699594 + AT_rich Low_complexity Low_complexity 1 52 0 2043 120 17 0 chr11 23084835 23085126 -127698427 + AluSq SINE Alu 1 296 -17 200 287 8 107 chr11 23085206 23085328 -127698225 + MIR3 SINE MIR 60 169 -39 246 202 124 45 chr11 23085506 23085585 -127697968 - MER103 DNA DNA -70 96 8 508 311 70 48 chr11 23085585 23085984 -127697569 - MLT1I LTR MaLR 0 409 2 219 280 147 0 chr11 23086021 23086096 -127697457 + L3 LINE CR1 1491 1576 -1 267 152 0 0 chr11 23086689 23086735 -127696818 + (TA)n Simple_repeat Simple_repeat 1 46 0 25 31 0 0 chr11 23087822 23087854 -127695699 + AT_rich Low_complexity Low_complexity 1 32 0 290 355 48 24 chr11 23087934 23088100 -127695453 - MIR3 SINE MIR -21 187 18 206 156 0 22 chr11 23088512 23088557 -127694996 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 194 173 0 39 chr11 23088561 23088613 -127694940 + CT-rich Low_complexity Low_complexity 2 51 0 3103 169 41 66 chr11 23089417 23090126 -127693427 + LTR8 LTR ERV1 1 691 0 234 306 24 0 chr11 23090126 23090211 -127693342 + LTR16A LTR ERVL 28 114 -336 1313 211 27 77 chr11 23090382 23090747 -127692806 - MLT1A1 LTR MaLR -18 347 1 254 284 0 35 chr11 23090755 23090871 -127692682 + CT-rich Low_complexity Low_complexity 1 112 0 362 356 85 11 chr11 23091524 23091712 -127691841 + MIR SINE MIR 31 232 -30 1772 234 102 14 chr11 23091719 23092231 -127691322 + MLT1F1 LTR MaLR 1 557 -10 239 345 28 35 chr11 23092614 23092756 -127690797 - MIR SINE MIR -113 149 9 630 317 44 0 chr11 23093989 23094216 -127689337 + MIR SINE MIR 15 251 -11 2105 298 57 18 chr11 23094602 23095374 -127688179 + L2 LINE L2 1934 2735 -579 250 50 25 25 chr11 23095376 23095416 -127688137 + L1P4 LINE L1 5638 5677 -484 437 280 124 97 chr11 23095453 23095662 -127687891 + L2 LINE L2 2741 2943 -370 435 19 0 0 chr11 23095662 23095714 -127687839 + (CA)n Simple_repeat Simple_repeat 2 53 0 437 280 124 97 chr11 23095714 23096062 -127687491 + L2 LINE L2 2943 3313 0 213 407 55 0 chr11 23096149 23096294 -127687259 - MIR3 SINE MIR -28 180 28 4260 134 21 0 chr11 23096462 23097124 -127686429 + L1PA14 LINE L1 5484 6159 -2 830 98 8 0 chr11 23097006 23097128 -127686425 + L1PA13 LINE L1 6041 6163 0 242 116 23 0 chr11 23097633 23097676 -127685877 + CT-rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr11 23097977 23097999 -127685554 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr11 23098018 23098043 -127685510 + AT_rich Low_complexity Low_complexity 1 25 0 273 254 0 42 chr11 23100677 23100748 -127682805 - MIR SINE MIR 0 262 195 466 272 97 53 chr11 23100749 23100955 -127682598 - MIR SINE MIR -25 237 23 200 333 50 10 chr11 23100947 23101046 -127682507 + L3 LINE CR1 1079 1181 -396 * 648 282 82 37 chr11 23101334 23101579 -127681974 + L3 LINE CR1 1225 1480 -97 25 0 0 0 chr11 23101870 23101895 -127681658 + AT_rich Low_complexity Low_complexity 1 25 0 524 264 0 8 chr11 23101914 23102043 -127681510 - L2 LINE L2 -1 3312 3185 254 304 87 0 chr11 23102117 23102209 -127681344 + L2 LINE L2 3171 3270 -2 551 288 214 57 chr11 23102400 23102494 -127681059 + L3 LINE CR1 1081 1159 -418 799 244 77 5 chr11 23102494 23102703 -127680850 - MER58A DNA MER1_type 0 224 1 551 288 214 57 chr11 23102703 23102745 -127680808 + L3 LINE CR1 1159 1193 -384 2168 127 135 5 chr11 23102745 23103123 -127680430 - MSTA LTR MaLR 0 428 2 551 288 214 57 chr11 23103123 23103405 -127680148 + L3 LINE CR1 1193 1566 -11 532 328 57 15 chr11 23104725 23104990 -127678563 + MER102b DNA MER1_type 56 331 -10 365 257 86 29 chr11 23105096 23105236 -127678317 - LTR33A LTR ERVL -363 160 13 229 313 30 0 chr11 23105342 23105409 -127678144 + MIR3 SINE MIR 126 194 -14 21 0 0 0 chr11 23105612 23105633 -127677920 + AT_rich Low_complexity Low_complexity 1 21 0 182 36 0 36 chr11 23105799 23105827 -127677726 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 27 49 0 0 chr11 23106614 23106655 -127676898 + AT_rich Low_complexity Low_complexity 1 41 0 180 0 0 0 chr11 23107254 23107274 -127676279 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 187 298 68 73 chr11 23108136 23108341 -127675212 - L2 LINE L2 -3 3310 3107 447 351 53 0 chr11 23108845 23109053 -127674500 + L2 LINE L2 2841 3059 -254 285 346 30 0 chr11 23109366 23109467 -127674086 - MLT1L LTR MaLR -344 271 168 207 204 0 0 chr11 23109653 23109697 -127673856 + (TA)n Simple_repeat Simple_repeat 1 44 0 207 0 0 0 chr11 23110600 23110623 -127672930 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 234 0 0 0 chr11 23110920 23110946 -127672607 + (T)n Simple_repeat Simple_repeat 1 26 0 194 323 140 11 chr11 23111258 23111351 -127672202 + MIR3 SINE MIR 68 172 -36 839 301 27 12 chr11 23111598 23111854 -127671699 - MIR SINE MIR 0 262 3 247 282 0 14 chr11 23112616 23112687 -127670866 + MLT1J LTR MaLR 3 72 -439 232 254 42 14 chr11 23112739 23112810 -127670743 + MLT1L LTR MaLR 207 279 -336 24 0 0 0 chr11 23112977 23113001 -127670552 + AT_rich Low_complexity Low_complexity 1 24 0 234 0 0 0 chr11 23113296 23113322 -127670231 + (GA)n Simple_repeat Simple_repeat 1 26 0 323 308 70 23 chr11 23113623 23113837 -127669716 + MLT1L LTR MaLR 374 597 -18 786 219 123 101 chr11 23114236 23114593 -127668960 + MSTD LTR MaLR 1 396 0 202 359 134 14 chr11 23114616 23114758 -127668795 - MIR SINE MIR -70 192 34 803 246 14 33 chr11 23114775 23114990 -127668563 - LTR40a LTR ERVL -306 213 3 21 0 0 0 chr11 23115159 23115180 -127668373 + AT_rich Low_complexity Low_complexity 1 21 0 1060 136 12 12 chr11 23115180 23115349 -127668204 + MSTB LTR MaLR 258 426 0 1172 176 88 0 chr11 23115416 23115632 -127667921 + MER46A DNA MER2_type 1 235 -1 820 153 107 0 chr11 23116006 23116156 -127667397 - MER46A DNA MER2_type -69 167 2 924 217 16 0 chr11 23116688 23116877 -127666676 + MLT2B1 LTR ERVL 9 200 -320 309 335 48 37 chr11 23117213 23117401 -127666152 - MIR SINE MIR -70 192 3 2821 7 0 0 chr11 23117579 23117884 -127665669 - AluYa5 SINE Alu -6 305 1 2381 91 3 0 chr11 23118847 23119145 -127664408 - AluSp SINE Alu -14 299 1 1849 229 35 37 chr11 23119145 23119690 -127663863 - L1ME1 LINE L1 -10 6156 5613 1424 211 31 25 chr11 23119726 23120048 -127663505 + MLT1B LTR MaLR 67 390 0 866 184 57 14 chr11 23120048 23120276 -127663277 - L1ME1 LINE L1 -555 5614 5367 715 281 36 0 chr11 23120286 23120482 -127663071 + MLT1B LTR MaLR 188 390 0 1110 216 37 143 chr11 23121138 23121545 -127662008 + MLT1A2 LTR MaLR 3 366 -8 3030 224 9 9 chr11 23121549 23122215 -127661338 + MLT1A2-int LTR MaLR 1 666 -1069 336 246 139 16 chr11 23123444 23123566 -127659987 + MIR SINE MIR 120 256 -6 181 0 0 65 chr11 23124090 23124121 -127659432 + (CAA)n Simple_repeat Simple_repeat 2 30 0 261 225 50 50 chr11 23125360 23125440 -127658113 + MIR SINE MIR 71 150 -112 229 256 0 41 chr11 23125524 23125645 -127657908 + T-rich Low_complexity Low_complexity 5 120 0 205 171 0 0 chr11 23126202 23126237 -127657316 - L2 LINE L2 -9 3263 3229 207 162 0 0 chr11 23126336 23126373 -127657180 + (TG)n Simple_repeat Simple_repeat 2 38 0 437 309 115 6 chr11 23126391 23126556 -127656997 + MIR3 SINE MIR 4 186 -22 21 71 0 0 chr11 23126638 23126680 -127656873 + AT_rich Low_complexity Low_complexity 1 42 0 2499 57 0 25 chr11 23126971 23127289 -127656264 - AluY SINE Alu -1 310 1 441 316 126 5 chr11 23127530 23127745 -127655808 - MIR SINE MIR -2 260 20 1154 158 6 0 chr11 23127939 23128116 -127655437 - AluJb SINE Alu -4 308 131 483 130 0 0 chr11 23128116 23128193 -127655360 + (TCCC)n Simple_repeat Simple_repeat 3 79 0 1443 181 3 28 chr11 23128195 23128525 -127655028 - AluJo SINE Alu 0 324 2 452 245 0 0 chr11 23128716 23128810 -127654743 - MIR SINE MIR -78 184 91 265 141 0 31 chr11 23129032 23129096 -127654457 + (TAA)n Simple_repeat Simple_repeat 1 62 0 487 213 41 25 chr11 23129161 23129283 -127654270 - MIR SINE MIR 0 262 139 318 26 0 0 chr11 23129455 23129494 -127654059 + (TG)n Simple_repeat Simple_repeat 2 40 0 408 314 85 58 chr11 23129509 23129732 -127653821 - L3 LINE CR1 -5 1572 1344 468 276 29 65 chr11 23129770 23129940 -127653613 + MIR SINE MIR 28 191 -71 2223 123 7 0 chr11 23130922 23131231 -127652322 + AluSq SINE Alu 1 311 -2 183 184 0 0 chr11 23131711 23131749 -127651804 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 196 370 50 25 chr11 23132720 23132839 -127650714 - L2 LINE L2 0 3272 3151 186 309 0 44 chr11 23133931 23133999 -127649554 - L2 LINE L2 -2 3270 3206 679 293 86 0 chr11 23134220 23134452 -127649101 - MIR SINE MIR -6 256 5 676 319 96 69 chr11 23134428 23134657 -127648896 + L2 LINE L2 2199 2420 -894 * 186 43 0 0 chr11 23134657 23134680 -127648873 + (CA)n Simple_repeat Simple_repeat 1 23 0 676 319 96 69 chr11 23134680 23135127 -127648426 + L2 LINE L2 2420 2893 -421 596 328 75 40 chr11 23135177 23135576 -127647977 + L2 LINE L2 2893 3305 -8 233 289 171 66 chr11 23136115 23136402 -127647151 - L3 LINE CR1 -279 1298 982 205 318 94 0 chr11 23136701 23136786 -127646767 + MIR SINE MIR 47 139 -69 282 125 0 0 chr11 23137948 23137996 -127645557 + (CA)n Simple_repeat Simple_repeat 2 49 0 374 174 82 0 chr11 23138756 23138854 -127644699 + L1M4 LINE L1 3875 3980 -2166 2400 44 0 0 chr11 23138878 23139174 -127644379 - L1PA4 LINE L1 -3 6152 5857 24 32 0 0 chr11 23139306 23139337 -127644216 + AT_rich Low_complexity Low_complexity 1 31 0 391 336 95 75 chr11 23140203 23140498 -127643055 - L2 LINE L2 0 3272 2972 690 229 6 13 chr11 23140684 23140841 -127642712 + MLT1C LTR MaLR 310 465 -2 1649 185 35 72 chr11 23140856 23141261 -127642292 + MLT1B LTR MaLR 1 390 0 342 306 75 0 chr11 23142746 23142880 -127640673 - MIR SINE MIR -10 252 109 423 328 27 16 chr11 23143254 23143440 -127640113 + MIR3 SINE MIR 21 208 0 209 176 0 0 chr11 23143608 23143642 -127639911 + (CA)n Simple_repeat Simple_repeat 1 34 0 1474 169 74 24 chr11 23143716 23144012 -127639541 - AluJo SINE Alu 0 312 2 326 189 25 25 chr11 23144436 23144558 -127638995 + T-rich Low_complexity Low_complexity 4 125 0 1379 104 14 5 chr11 23144561 23144781 -127638772 - L1MA9 LINE L1 0 6312 6091 472 226 35 17 chr11 23145368 23145483 -127638070 - L2 LINE L2 -1 3312 3196 21 36 0 0 chr11 23145937 23145965 -127637588 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 23146099 23146120 -127637433 + AT_rich Low_complexity Low_complexity 1 21 0 3026 241 99 33 chr11 23146394 23147282 -127636271 - L1ME1 LINE L1 -5 6161 5333 1762 116 11 4 chr11 23147282 23147550 -127636003 - L1PA10 LINE L1 -1 6167 5898 3026 241 99 33 chr11 23147550 23148608 -127634945 - L1ME1 LINE L1 -833 5333 4346 2192 57 0 93 chr11 23148608 23148941 -127634612 - AluY SINE Alu -9 302 1 3026 241 99 33 chr11 23148941 23149063 -127634490 - L1ME1 LINE L1 -1820 4346 4234 1340 200 54 41 chr11 23149063 23149358 -127634195 - AluSx SINE Alu -13 299 1 3026 241 99 33 chr11 23149358 23149481 -127634072 - L1ME1 LINE L1 -1932 4234 3859 418 269 119 43 chr11 23149486 23149980 -127633573 - L1ME4a LINE L1 -158 5963 5403 460 298 23 0 chr11 23150071 23150202 -127633351 - MIR SINE MIR 0 262 129 219 254 0 0 chr11 23151399 23151458 -127632095 + A-rich Low_complexity Low_complexity 2 60 0 1682 150 0 4 chr11 23153075 23153328 -127630225 - AluSx SINE Alu -60 252 1 246 32 0 0 chr11 23154206 23154237 -127629316 + (TG)n Simple_repeat Simple_repeat 2 32 0 419 276 18 80 chr11 23154243 23154406 -127629147 - MIR SINE MIR -71 191 39 353 324 29 7 chr11 23154419 23154558 -127628995 + MIR SINE MIR 71 212 -50 253 350 45 32 chr11 23155288 23155356 -127628197 + MIR SINE MIR 2 68 -194 2328 70 0 22 chr11 23155356 23155668 -127627885 + AluY SINE Alu 1 305 -6 253 350 45 32 chr11 23155668 23155819 -127627734 + MIR SINE MIR 68 224 -38 225 159 0 0 chr11 23156831 23156875 -127626678 + T-rich Low_complexity Low_complexity 1 44 0 1782 168 55 0 chr11 23156885 23157177 -127626376 - AluSx SINE Alu -4 308 1 245 282 26 26 chr11 23157204 23157282 -127626271 + MLT1K LTR MaLR 188 265 -323 236 356 87 0 chr11 23159724 23159839 -127623714 + MIR3 SINE MIR 43 167 -41 545 96 0 0 chr11 23159841 23159924 -127623629 - L1PA13 LINE L1 -7 6156 6074 2554 33 0 3 chr11 23160210 23160517 -127623036 + L1PA3 LINE L1 5845 6150 -5 2227 124 0 0 chr11 23160855 23161161 -127622392 + AluSg1 SINE Alu 1 306 -3 313 159 120 3 chr11 23161662 23161752 -127621801 - L1MD3 LINE L1 0 7808 7723 1596 234 50 46 chr11 23161799 23162300 -127621253 - MLT1D LTR MaLR -2 503 1 1146 206 14 18 chr11 23162300 23162576 -127620977 - L1MD3 LINE L1 -80 7915 7641 264 302 12 0 chr11 23163482 23163568 -127619985 - MLT1I LTR MaLR -256 153 67 405 309 64 21 chr11 23163582 23163770 -127619783 - L1ME LINE L1 -530 5591 5396 202 239 91 11 chr11 23164094 23164182 -127619371 + MIR SINE MIR 125 219 -43 22 70 0 0 chr11 23164591 23164634 -127618919 + AT_rich Low_complexity Low_complexity 1 43 0 577 366 18 4 chr11 23164731 23164958 -127618595 - MIR SINE MIR -13 249 20 26 0 0 0 chr11 23165144 23165170 -127618383 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr11 23165190 23165216 -127618337 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 42514 35 22 1 chr11 23165216 23171224 -127612329 - L1PA3 LINE L1 -13 6142 4 216 0 0 0 chr11 23172833 23172857 -127610696 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 599 207 0 25 chr11 23172860 23172981 -127610572 - FLAM_A SINE Alu -15 118 1 329 255 35 20 chr11 23173053 23173287 -127610266 - L1ME3A LINE L1 -53 6117 5844 305 256 8 83 chr11 23173344 23173477 -127610076 - L1ME3A LINE L1 -331 5839 5717 888 271 139 15 chr11 23173691 23174030 -127609523 - L2 LINE L2 -559 2755 2375 237 312 57 43 chr11 23174696 23174837 -127608716 + L2 LINE L2 2909 3051 -221 389 230 147 23 chr11 23175245 23175409 -127608144 + MLT1H LTR MaLR 6 159 -291 309 257 0 0 chr11 23175409 23175479 -127608074 - MER96 DNA MER1_type? -3 172 103 346 359 24 53 chr11 23175943 23176149 -127607404 + L2 LINE L2 2912 3111 -202 319 307 64 14 chr11 23176242 23176382 -127607171 - MIR SINE MIR -42 220 74 374 291 77 46 chr11 23176670 23176866 -127606687 - L1ME3A LINE L1 -517 5604 5403 249 108 0 0 chr11 23179518 23179555 -127603998 + (A)n Simple_repeat Simple_repeat 1 37 0 1544 85 0 5 chr11 23179633 23179833 -127603720 + AluSq SINE Alu 1 199 -114 337 91 0 0 chr11 23179833 23179877 -127603676 + AluSq SINE Alu 246 289 -11 626 304 55 5 chr11 23180477 23180694 -127602859 - MIR SINE MIR 0 262 35 395 164 75 0 chr11 23182735 23182802 -127600751 - L2 LINE L2 -1 3312 3241 1455 185 26 86 chr11 23182839 23183223 -127600330 + MLT1A2 LTR MaLR 1 361 -13 220 313 37 86 chr11 23183335 23183603 -127599950 - L2 LINE L2 -207 3065 2811 267 316 235 0 chr11 23183607 23183854 -127599699 + L3 LINE CR1 1269 1573 -4 6192 160 13 16 chr11 23184054 23185122 -127598431 + Tigger1 DNA MER2_type 1 1065 -1353 1535 159 17 60 chr11 23185119 23185420 -127598133 + Tigger1 DNA MER2_type 2130 2417 -1 * 183 42 0 0 chr11 23186106 23186130 -127597423 + (CA)n Simple_repeat Simple_repeat 2 25 0 228 205 0 0 chr11 23186690 23186729 -127596824 - Charlie4 DNA MER1_type 0 1961 1923 1839 244 52 48 chr11 23186746 23187283 -127596270 - MLT1F LTR MaLR -3 539 1 554 358 123 34 chr11 23187427 23187955 -127595598 - L2 LINE L2 -344 2970 2396 420 266 101 18 chr11 23189019 23189188 -127594365 + MIR SINE MIR 6 188 -74 203 218 91 18 chr11 23190790 23190845 -127592708 + L2 LINE L2 3193 3251 -62 2228 87 0 62 chr11 23191398 23191719 -127591834 - AluY SINE Alu -10 301 1 21 0 0 0 chr11 23192598 23192619 -127590934 + AT_rich Low_complexity Low_complexity 1 21 0 536 269 39 8 chr11 23192694 23192824 -127590729 - L2 LINE L2 -2 3270 3137 216 305 0 0 chr11 23193096 23193155 -127590398 + MIR SINE MIR 178 236 -26 210 243 56 93 chr11 23193170 23193277 -127590276 - MIR SINE MIR -24 238 136 2490 135 10 0 chr11 23193287 23193679 -127589874 - L1PA16 LINE L1 -2 6164 5769 5355 198 13 5 chr11 23193680 23197061 -127586492 - L1PA15 LINE L1 -2 7601 4054 4380 279 57 53 chr11 23197063 23199120 -127584433 - L1PA15 LINE L1 -5508 2073 8 3102 157 24 2 chr11 23199128 23199787 -127583766 - L1P4 LINE L1 -384 5782 5102 727 213 11 17 chr11 23199791 23199965 -127583588 + L1P LINE L1 4825 4997 -1149 309 276 35 35 chr11 23200280 23200396 -127583157 + MIR SINE MIR 82 197 -65 457 293 56 84 chr11 23200754 23200885 -127582668 + MIR SINE MIR 18 140 -122 378 0 0 0 chr11 23200885 23200927 -127582626 + (TG)n Simple_repeat Simple_repeat 1 42 0 457 293 56 84 chr11 23200927 23201044 -127582509 + MIR SINE MIR 140 259 -3 830 93 0 0 chr11 23202368 23202476 -127581077 - AluY SINE Alu -203 108 1 363 309 72 7 chr11 23202509 23202648 -127580905 - HAL1 LINE L1 -770 1737 1590 555 204 78 28 chr11 23202658 23202866 -127580687 - MLT1H LTR MaLR -24 602 311 256 240 280 24 chr11 23202981 23203106 -127580447 - MLT1H LTR MaLR -392 157 1 248 345 23 0 chr11 23204108 23204195 -127579358 - MLT-int LTR MaLR -1209 526 438 1627 159 26 4 chr11 23204462 23204732 -127578821 + AluSx SINE Alu 22 297 -15 286 364 50 16 chr11 23204825 23204946 -127578607 + L2 LINE L2 3148 3272 0 282 279 211 0 chr11 23205385 23205489 -127578064 - MIR SINE MIR -89 173 48 189 0 0 0 chr11 23205517 23205538 -127578015 + (A)n Simple_repeat Simple_repeat 1 21 0 289 270 145 54 chr11 23206768 23207064 -127576489 - L2 LINE L2 0 3313 2991 1597 117 26 0 chr11 23207066 23207331 -127576222 + L1MA3 LINE L1 6033 6304 -1 278 250 21 42 chr11 23208916 23209012 -127574541 + LTR67 LTR ERVL 432 525 -32 21 36 0 0 chr11 23209149 23209177 -127574376 + AT_rich Low_complexity Low_complexity 1 28 0 508 296 164 0 chr11 23210712 23210871 -127572682 - MER5A DNA MER1_type -1 188 4 576 337 28 35 chr11 23210918 23211173 -127572380 + MIR SINE MIR 10 262 0 22 0 0 0 chr11 23212955 23212977 -127570576 + AT_rich Low_complexity Low_complexity 1 22 0 567 320 61 48 chr11 23213039 23213480 -127570073 + L1M4 LINE L1 4384 4830 -1316 1519 148 3 33 chr11 23213513 23213816 -127569737 + L1PA13 LINE L1 5870 6163 0 2665 163 38 4 chr11 23213912 23214414 -127569139 + L1MA8 LINE L1 5732 6249 -42 2127 184 35 11 chr11 23214415 23214845 -127568708 + MSTB LTR MaLR 1 425 -1 23 54 0 0 chr11 23215317 23215354 -127568199 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr11 23216562 23216598 -127566955 + AT_rich Low_complexity Low_complexity 1 36 0 182 321 24 12 chr11 23218977 23219061 -127564492 + L2 LINE L2 3153 3237 -76 315 0 0 0 chr11 23219795 23219830 -127563723 + (TG)n Simple_repeat Simple_repeat 2 36 0 2060 172 40 27 chr11 23221052 23221597 -127561956 - MLT2A2 LTR ERVL 0 554 1 230 281 35 35 chr11 23222775 23222889 -127560664 - LTR67 LTR ERVL -5 552 439 219 139 0 0 chr11 23223213 23223249 -127560304 + (TTC)n Simple_repeat Simple_repeat 2 37 0 348 294 59 8 chr11 23223299 23223418 -127560135 - MIR SINE MIR -1 261 137 605 129 207 9 chr11 23223518 23223634 -127559919 + MLT1A1 LTR MaLR 1 139 -226 1151 189 120 21 chr11 23223715 23224006 -127559547 - MER31B LTR ERV1 -143 323 4 2145 129 0 0 chr11 23224305 23224616 -127558937 + AluSq SINE Alu 3 313 0 22 35 0 0 chr11 23224644 23224673 -127558880 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr11 23225179 23225202 -127558351 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr11 23225546 23225578 -127557975 + AT_rich Low_complexity Low_complexity 1 32 0 225 299 47 9 chr11 23225591 23225698 -127557855 - HAL1b LINE L1 -41 1307 1197 623 292 160 19 chr11 23226075 23226406 -127557147 - LTR33A LTR ERVL -153 370 25 247 253 142 31 chr11 23226437 23226599 -127556954 - HAL1b LINE L1 -381 967 788 306 0 0 0 chr11 23226636 23226670 -127556883 + (CA)n Simple_repeat Simple_repeat 2 35 0 2299 81 0 10 chr11 23226786 23227093 -127556460 + AluY SINE Alu 1 304 -7 356 230 71 0 chr11 23227130 23227243 -127556310 - HAL1b LINE L1 -772 576 456 652 264 78 74 chr11 23227266 23227818 -127555735 - HAL1b LINE L1 -701 647 94 457 115 23 11 chr11 23228107 23228194 -127555359 + CT-rich Low_complexity Low_complexity 2 89 0 2049 106 7 10 chr11 23228311 23228604 -127554949 + AluY SINE Alu 1 292 -19 530 306 70 15 chr11 23228693 23228931 -127554622 + MIR SINE MIR 2 252 -10 2251 121 11 11 chr11 23230192 23230547 -127553006 + THE1A LTR MaLR 1 355 0 225 280 53 13 chr11 23230872 23230947 -127552606 + MIR SINE MIR 128 205 -57 3085 189 77 31 chr11 23231375 23232157 -127551396 + L1MDa LINE L1 1108 1935 -4605 1999 85 3 59 chr11 23232157 23232510 -127551043 + AluSq SINE Alu 1 313 0 3085 189 77 31 chr11 23232510 23232598 -127550955 + L1MDa LINE L1 1935 2018 -4522 25 31 0 0 chr11 23232796 23232828 -127550725 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr11 23233421 23233444 -127550109 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr11 23234213 23234247 -127549306 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr11 23234634 23234657 -127548896 + AT_rich Low_complexity Low_complexity 1 23 0 303 388 81 37 chr11 23235043 23235544 -127548009 - L2 LINE L2 -25 3247 2716 2803 269 118 49 chr11 23235582 23236293 -127547260 - L2 LINE L2 -4 3309 2649 4946 144 20 47 chr11 23236293 23237230 -127546323 + L1MC1 LINE L1 5422 6333 0 2803 269 118 49 chr11 23237230 23238043 -127545510 - L2 LINE L2 -664 2649 1699 10464 42 1 0 chr11 23238043 23240092 -127543461 + L1PA4 LINE L1 4102 6152 -3 442 211 51 143 chr11 23240101 23240338 -127543215 - MER69 DNA AcHobo -295 2231 2017 2194 104 3 3 chr11 23240702 23240999 -127542554 - AluSx SINE Alu -15 297 1 1964 72 4 0 chr11 23241858 23242123 -127541430 - L1PA13 LINE L1 -4 6159 5894 315 230 324 7 chr11 23242160 23242299 -127541254 + ERVL LTR ERVL 1782 1964 -3800 337 354 68 41 chr11 23242678 23243119 -127540434 + ERVL LTR ERVL 2506 2958 -2806 306 335 24 0 chr11 23243129 23243276 -127540277 + ERVL LTR ERVL 3302 3490 -2203 493 122 31 31 chr11 23243282 23243380 -127540173 + MER4A LTR ERV1 1 98 -566 1738 137 3 77 chr11 23243380 23243753 -127539800 + MER4A LTR ERV1 261 664 0 27 73 0 0 chr11 23245746 23245801 -127537752 + AT_rich Low_complexity Low_complexity 1 55 0 2691 162 25 0 chr11 23246739 23247226 -127536327 - L1PA16 LINE L1 -4 6162 5664 25 31 0 0 chr11 23247412 23247444 -127536109 + AT_rich Low_complexity Low_complexity 1 32 0 669 78 0 0 chr11 23247596 23247686 -127535867 - 5S rRNA rRNA -31 90 1 220 234 0 0 chr11 23247831 23247878 -127535675 - MIR SINE MIR -109 153 107 235 295 115 13 chr11 23248443 23248521 -127535032 + MIR SINE MIR 21 106 -156 751 174 10 103 chr11 23248563 23248689 -127534864 + MER5B DNA MER1_type 2 105 -73 1382 226 3 10 chr11 23248689 23248994 -127534559 - AluJb SINE Alu -9 303 1 751 174 10 103 chr11 23248994 23249062 -127534491 + MER5B DNA MER1_type 105 178 0 27 0 0 0 chr11 23249146 23249173 -127534380 + AT_rich Low_complexity Low_complexity 1 27 0 1911 150 0 38 chr11 23249267 23249581 -127533972 - AluSx SINE Alu -10 302 1 22 0 0 0 chr11 23249584 23249606 -127533947 + AT_rich Low_complexity Low_complexity 1 22 0 665 171 8 16 chr11 23250852 23250975 -127532578 - FRAM SINE Alu -33 143 22 1457 157 4 24 chr11 23251145 23251400 -127532153 + AluJb SINE Alu 1 250 -62 28 29 0 0 chr11 23252335 23252370 -127531183 + AT_rich Low_complexity Low_complexity 1 35 0 1940 125 14 4 chr11 23252451 23252751 -127530802 + AluSx SINE Alu 1 303 0 275 131 115 16 chr11 23253123 23253184 -127530369 - Alu SINE Alu -2 300 234 1584 101 140 0 chr11 23253184 23253412 -127530141 - AluSc SINE Alu -49 260 1 22 0 0 0 chr11 23254031 23254053 -127529500 + AT_rich Low_complexity Low_complexity 1 22 0 26 82 0 0 chr11 23254126 23254187 -127529366 + AT_rich Low_complexity Low_complexity 1 61 0 303 298 48 12 chr11 23255081 23255165 -127528388 - L2 LINE L2 0 3272 3186 482 224 17 9 chr11 23255379 23255495 -127528058 + AluJ SINE Alu 1 117 -185 521 185 23 116 chr11 23255495 23255568 -127527985 + AluJb SINE Alu 92 141 -171 1890 152 41 22 chr11 23255568 23255936 -127527617 - THE1C LTR MaLR 0 375 1 521 185 23 116 chr11 23255936 23256035 -127527518 + AluJb SINE Alu 141 248 -64 11463 27 1 1 chr11 23256308 23258038 -127525515 - L1P1 LINE L1 -408 5747 4019 5529 42 0 0 chr11 23258036 23258721 -127524832 + L1P LINE L1 3197 3881 -2265 * 852 236 36 36 chr11 23258722 23259027 -127524526 + MER69 DNA AcHobo 2222 2526 0 580 247 48 32 chr11 23259592 23259778 -127523775 + MIR SINE MIR 72 260 -2 356 293 111 20 chr11 23260012 23260210 -127523343 + L2 LINE L2 3098 3313 0 2057 130 3 0 chr11 23261507 23261807 -127521746 + AluSx SINE Alu 1 301 -11 935 244 101 30 chr11 23264149 23264546 -127519007 - Charlie4a DNA MER1_type -8 500 76 324 0 0 0 chr11 23264547 23264583 -127518970 + (TA)n Simple_repeat Simple_repeat 2 37 0 246 231 39 26 chr11 23264913 23264991 -127518562 - MIR SINE MIR -1 261 183 916 340 1 13 chr11 23264993 23265369 -127518184 + L2 LINE L2 2699 3070 -243 606 360 109 37 chr11 23265843 23266292 -127517261 - L2 LINE L2 -244 3028 2516 6327 28 3 0 chr11 23266292 23267038 -127516515 - L1PA3 LINE L1 0 6155 5408 606 360 109 37 chr11 23267038 23267206 -127516347 - L2 LINE L2 -756 2516 2362 637 261 142 9 chr11 23268337 23268563 -127514990 - MIR SINE MIR -5 257 2 444 338 40 14 chr11 23268610 23268758 -127514795 - L2 LINE L2 -4 3268 3117 5042 33 0 5 chr11 23269531 23270133 -127513420 + L1PA3 LINE L1 5556 6154 -1 207 0 0 0 chr11 23270138 23270161 -127513392 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 240 149 0 0 chr11 23270430 23270477 -127513076 + (TG)n Simple_repeat Simple_repeat 2 48 0 24 32 0 0 chr11 23270584 23270615 -127512938 + AT_rich Low_complexity Low_complexity 1 31 0 16840 164 34 17 chr11 23270902 23272749 -127510804 + L1PBa LINE L1 1 1815 -5047 1773 157 43 3 chr11 23272749 23273049 -127510504 + AluSx SINE Alu 1 312 0 16840 164 34 17 chr11 23273049 23275138 -127508415 + L1PBa LINE L1 1815 4032 -2830 2175 118 3 3 chr11 23275138 23275442 -127508111 + AluSg SINE Alu 4 307 -3 16840 164 34 17 chr11 23275442 23276314 -127507239 + L1PBa LINE L1 4032 4888 -1974 1265 201 14 17 chr11 23276315 23276608 -127506945 + AluSx SINE Alu 4 295 -17 3138 27 5 0 chr11 23276848 23277265 -127506288 + L1PA4 LINE L1 5765 6183 0 560 301 64 23 chr11 23277284 23277503 -127506050 - L2 LINE L2 -1689 1625 1398 256 305 39 47 chr11 23277510 23277638 -127505915 - L2 LINE L2 -614 2700 2574 226 324 0 0 chr11 23277803 23277871 -127505682 - L2 LINE L2 -803 2511 2444 3894 109 3 33 chr11 23277953 23278588 -127504965 - L1MA1 LINE L1 0 7721 7106 4738 115 5 0 chr11 23278591 23279258 -127504295 - THE1B-int LTR MaLR -910 670 1 1617 135 65 117 chr11 23279258 23279642 -127503911 - THE1B LTR MaLR 0 364 1 2130 114 37 14 chr11 23279643 23279993 -127503560 - L1MA1 LINE L1 -658 7063 6706 1431 183 70 18 chr11 23280000 23280284 -127503269 - MER1B DNA MER1_type -40 299 1 19697 178 41 12 chr11 23280284 23283524 -127500029 - L1MA1 LINE L1 -857 6708 3563 183 42 0 0 chr11 23283524 23283548 -127500005 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 19697 178 41 12 chr11 23283548 23286819 -127496734 - L1MA1 LINE L1 -4002 3563 13 1138 286 70 40 chr11 23286829 23287245 -127496308 - L2 LINE L2 -954 2360 1923 1669 139 92 47 chr11 23287245 23287433 -127496120 + THE1C LTR MaLR 1 179 -196 327 49 0 0 chr11 23287433 23287474 -127496079 + (TC)n Simple_repeat Simple_repeat 1 41 0 1669 139 92 47 chr11 23287474 23287644 -127495909 + THE1C LTR MaLR 179 375 0 1138 286 70 40 chr11 23287644 23287754 -127495799 - L2 LINE L2 -1391 1923 1818 343 297 97 60 chr11 23287973 23288407 -127495146 + L1MEd LINE L1 787 1236 -5136 579 307 63 37 chr11 23288601 23288901 -127494652 - MLT1J LTR MaLR -196 315 8 515 321 108 44 chr11 23288910 23289490 -127494063 + L1MEd LINE L1 1290 1811 -4573 308 286 135 22 chr11 23289810 23289988 -127493565 + L1MEd LINE L1 2643 2840 -3542 303 311 97 10 chr11 23290125 23290228 -127493325 - L2 LINE L2 -1 3271 3160 280 269 151 8 chr11 23291081 23291200 -127492353 - MIR3 SINE MIR -31 177 42 2224 86 10 3 chr11 23291217 23291507 -127492046 + AluSg SINE Alu 1 292 -18 210 310 17 0 chr11 23293772 23293830 -127489723 - L2 LINE L2 -7 3265 3207 1088 97 0 0 chr11 23294455 23294600 -127488953 - AluSq/x SINE Alu -166 147 3 180 380 110 0 chr11 23294765 23294865 -127488688 - L2 LINE L2 0 3272 3162 1996 132 0 43 chr11 23294991 23295317 -127488236 + AluSx SINE Alu 1 312 0 26 30 0 0 chr11 23296036 23296069 -127487484 + AT_rich Low_complexity Low_complexity 1 33 0 4522 114 4 47 chr11 23296146 23296892 -127486661 - L1PB3 LINE L1 0 6154 5441 6976 210 29 47 chr11 23296893 23297559 -127485994 - L1P5 LINE L1 -579 5632 4956 2549 51 0 0 chr11 23297559 23297874 -127485679 - L1PA5 LINE L1 -4 6150 5836 6976 210 29 47 chr11 23297874 23299743 -127483810 - L1P5 LINE L1 -1255 4956 3295 5861 188 18 12 chr11 23299752 23301514 -127482039 - L1P5 LINE L1 -4254 1950 171 2223 148 3 24 chr11 23301514 23301886 -127481667 - THE1B LTR MaLR 0 364 1 5861 188 18 12 chr11 23301886 23302059 -127481494 - L1P5 LINE L1 -6033 171 1 3213 272 26 91 chr11 23302027 23303772 -127479781 - L1PBa LINE L1 -5227 1636 5 * 223 245 19 0 chr11 23303873 23303926 -127479627 + MIR SINE MIR 157 210 -52 284 259 54 36 chr11 23303992 23304104 -127479449 + MLT1L LTR MaLR 87 200 -415 261 203 60 8 chr11 23304334 23304467 -127479086 + (TA)n Simple_repeat Simple_repeat 1 140 0 * 282 180 52 35 chr11 23304379 23304551 -127479002 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 377 89 30 75 chr11 23304583 23305020 -127478533 + (TTATA)n Simple_repeat Simple_repeat 1 417 0 230 88 44 62 chr11 23305032 23305145 -127478408 + (TTATA)n Simple_repeat Simple_repeat 3 113 0 239 81 23 81 chr11 23305147 23305234 -127478319 + (TATAA)n Simple_repeat Simple_repeat 5 86 0 * 399 200 48 6 chr11 23305187 23305352 -127478201 + (TA)n Simple_repeat Simple_repeat 2 173 0 2148 131 0 0 chr11 23305869 23306167 -127477386 - AluSx SINE Alu -14 298 1 1238 222 136 11 chr11 23306664 23307016 -127476537 + MSTD LTR MaLR 1 396 0 21 36 0 0 chr11 23307214 23307242 -127476311 + AT_rich Low_complexity Low_complexity 1 28 0 422 279 43 53 chr11 23308490 23308698 -127474855 + LTR33 LTR ERVL 15 220 -301 328 172 0 0 chr11 23308725 23308783 -127474770 + L1MC4 LINE L1 6648 6705 -1337 323 281 22 0 chr11 23308759 23308848 -127474705 - L1MC4 LINE L1 -1339 6703 6613 * 225 119 0 0 chr11 23308848 23308890 -127474663 + (TA)n Simple_repeat Simple_repeat 1 42 0 1280 56 12 0 chr11 23308890 23309052 -127474501 - L1PA5 LINE L1 -9 6145 5982 470 263 40 13 chr11 23309118 23309270 -127474283 + LTR33 LTR ERVL 366 521 0 1678 174 23 10 chr11 23312152 23312451 -127471102 - AluSx SINE Alu -9 303 1 233 191 16 0 chr11 23312743 23312755 -127470798 + (TA)n Simple_repeat Simple_repeat 2 12 -53 2017 111 18 4 chr11 23312755 23313035 -127470518 + AluSc SINE Alu 1 284 -25 233 191 16 0 chr11 23313035 23313085 -127470468 + (TA)n Simple_repeat Simple_repeat 12 65 0 2293 85 3 0 chr11 23313357 23313651 -127469902 - AluSp SINE Alu 0 313 19 325 126 23 35 chr11 23314359 23314446 -127469107 + CT-rich Low_complexity Low_complexity 2 87 0 42421 36 22 2 chr11 23314453 23320468 -127463085 - L1PA3 LINE L1 -9 6146 4 1047 54 11 49 chr11 23320474 23320659 -127462894 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 188 278 56 0 chr11 23320904 23320958 -127462595 + MIR SINE MIR 175 231 -31 808 254 154 28 chr11 23321280 23321765 -127461788 + MLT1G LTR MaLR 1 590 0 294 143 0 0 chr11 23321888 23321937 -127461616 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 1531 219 27 0 chr11 23321939 23322236 -127461317 - AluJo SINE Alu -1 311 7 189 294 229 0 chr11 23322871 23322980 -127460573 + L2 LINE L2 3173 3306 -7 1897 194 45 5 chr11 23324689 23325066 -127458487 - MER74C LTR ERVL 0 460 69 2263 108 3 10 chr11 23325569 23325875 -127457678 - AluSx SINE Alu -8 304 1 594 278 54 40 chr11 23325922 23326022 -127457531 + L2 LINE L2 2287 2384 -930 195 42 0 0 chr11 23326022 23326046 -127457507 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 594 278 54 40 chr11 23326046 23326168 -127457385 + L2 LINE L2 2384 2512 -802 1855 182 8 13 chr11 23326376 23326758 -127456795 + Ricksha DNA DNA 1 489 -1107 523 199 0 15 chr11 23327351 23327487 -127456066 + GA-rich Low_complexity Low_complexity 3 136 0 259 284 0 40 chr11 23327565 23327639 -127455914 + MIR SINE MIR 37 107 -155 180 277 185 0 chr11 23327651 23327716 -127455837 + L2 LINE L2 3147 3223 -49 579 300 48 40 chr11 23327939 23328189 -127455364 - MIR SINE MIR -4 258 7 249 83 0 0 chr11 23328859 23328895 -127454658 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 216 358 55 107 chr11 23328906 23329252 -127454301 - L2 LINE L2 -41 3231 2904 432 200 52 96 chr11 23329407 23329637 -127453916 - MER112 DNA MER1_type -40 220 1 316 286 48 12 chr11 23329974 23330058 -127453495 - L2 LINE L2 0 3272 3186 482 224 17 9 chr11 23330272 23330388 -127453165 + AluJ SINE Alu 1 117 -185 634 171 116 93 chr11 23330388 23330461 -127453092 + AluJb SINE Alu 92 162 -150 1893 158 41 19 chr11 23330461 23330828 -127452725 - THE1C LTR MaLR 0 375 1 634 171 116 93 chr11 23330828 23330970 -127452583 + AluJb SINE Alu 162 312 0 226 329 151 40 chr11 23338764 23338989 -127444564 - MIR SINE MIR -2 260 11 1015 76 0 15 chr11 23341773 23341905 -127441648 + AluSq/x SINE Alu 3 132 -180 340 285 12 1 chr11 23342270 23342366 -127441187 + MIR SINE MIR 17 113 -95 210 91 0 0 chr11 23342367 23342400 -127441153 + (T)n Simple_repeat Simple_repeat 1 33 0 182 310 23 35 chr11 23343265 23343352 -127440201 - MIR SINE MIR -90 172 87 188 271 51 17 chr11 23344010 23344069 -127439484 - MIR SINE MIR -110 152 92 1160 209 32 4 chr11 23344578 23344831 -127438722 + MIR SINE MIR 3 262 0 672 271 68 28 chr11 23344915 23345166 -127438387 + MIR SINE MIR 2 262 0 465 333 146 27 chr11 23345162 23345676 -127437877 - L2 LINE L2 -33 3280 2716 * 622 211 43 37 chr11 23345874 23346035 -127437518 + MIR3 SINE MIR 32 193 -15 22 0 0 0 chr11 23346514 23346536 -127437017 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr11 23347048 23347077 -127436476 + AT_rich Low_complexity Low_complexity 1 29 0 457 277 46 50 chr11 23349206 23349466 -127434087 + MIR SINE MIR 2 260 -2 25 83 0 0 chr11 23350211 23350271 -127433282 + AT_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr11 23350344 23350366 -127433187 + AT_rich Low_complexity Low_complexity 1 22 0 1162 124 21 11 chr11 23350987 23351173 -127432380 + AluSc SINE Alu 1 188 -121 302 67 0 0 chr11 23351475 23351544 -127432009 + Alu SINE Alu 256 324 0 * 9020 180 26 17 chr11 23351539 23352403 -127431150 + L1PA16 LINE L1 3289 4144 -2022 1679 180 3 13 chr11 23352403 23352714 -127430839 + AluSx SINE Alu 4 311 -1 9020 180 26 17 chr11 23352714 23354691 -127428862 + L1PA16 LINE L1 4144 6134 -32 180 0 0 0 chr11 23354702 23354722 -127428831 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1550 179 45 22 chr11 23355085 23355443 -127428110 - L1MA7 LINE L1 -9 6282 5917 2585 146 86 7 chr11 23355443 23355990 -127427563 - L1MC1 LINE L1 -8 6325 5652 194 222 9 111 chr11 23357087 23357195 -127426358 + MIR SINE MIR 113 209 -53 199 359 0 26 chr11 23357265 23357343 -127426210 - L2 LINE L2 -9 3263 3188 770 178 156 22 chr11 23357618 23357798 -127425755 - MER3 DNA MER1_type -1 208 5 259 311 52 57 chr11 23357965 23358158 -127425395 - MIR SINE MIR -43 219 28 432 294 91 7 chr11 23360269 23360545 -127423008 - L1MC4a LINE L1 -1928 5880 5582 1515 206 21 4 chr11 23361482 23361763 -127421790 - AluJb SINE Alu -25 287 2 36 70 0 0 chr11 23364568 23364639 -127418914 + AT_rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chr11 23364911 23364932 -127418621 + AT_rich Low_complexity Low_complexity 1 21 0 412 352 39 6 chr11 23365845 23366024 -127417529 + L1ME LINE L1 5486 5670 -451 2360 78 3 0 chr11 23367644 23367951 -127415602 + AluY SINE Alu 1 308 -3 32 26 0 0 chr11 23368299 23368338 -127415215 + AT_rich Low_complexity Low_complexity 1 39 0 229 398 0 9 chr11 23370052 23370160 -127413393 - MIR SINE MIR -134 128 22 414 57 0 0 chr11 23370822 23370875 -127412678 + (CAT)n Simple_repeat Simple_repeat 2 54 0 461 274 170 0 chr11 23370990 23371143 -127412410 - MER5A DNA MER1_type 0 189 11 23 0 0 0 chr11 23371368 23371391 -127412162 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr11 23372634 23372669 -127410884 + AT_rich Low_complexity Low_complexity 1 35 0 406 297 117 36 chr11 23372672 23372894 -127410659 - MIR SINE MIR -15 247 8 186 43 0 0 chr11 23373273 23373296 -127410257 + (T)n Simple_repeat Simple_repeat 1 23 0 231 338 15 0 chr11 23378112 23378180 -127405373 - MIR SINE MIR -108 100 32 216 300 75 25 chr11 23378433 23378553 -127405000 - MIR SINE MIR -27 235 110 186 269 77 13 chr11 23378654 23378732 -127404821 - MIR SINE MIR -84 178 96 7408 211 113 19 chr11 23378753 23380913 -127402640 + L1PA16 LINE L1 3071 5440 -726 1417 179 10 51 chr11 23380913 23381232 -127402321 + AluJb SINE Alu 1 307 0 4095 124 29 3 chr11 23381237 23381888 -127401665 + L1PA16 LINE L1 5490 6157 -9 24 0 0 0 chr11 23381888 23381912 -127401641 + AT_rich Low_complexity Low_complexity 1 24 0 287 295 187 22 chr11 23383218 23383357 -127400196 + MIR3 SINE MIR 38 199 -9 22 0 0 0 chr11 23385038 23385060 -127398493 + AT_rich Low_complexity Low_complexity 1 22 0 203 313 83 62 chr11 23385869 23386061 -127397492 + L2 LINE L2 1817 2012 -1302 309 250 73 98 chr11 23387142 23387306 -127396247 - MER103 DNA DNA -4 162 3 230 260 0 21 chr11 23387666 23387762 -127395791 + GA-rich Low_complexity Low_complexity 2 95 0 191 35 0 35 chr11 23391322 23391351 -127392202 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 2409 91 3 0 chr11 23393658 23393966 -127389587 + AluSp SINE Alu 2 310 -3 1461 133 26 89 chr11 23395043 23395313 -127388240 - AluSx SINE Alu -53 259 7 998 184 27 11 chr11 23395327 23395512 -127388041 + MER5A DNA MER1_type 1 188 -1 567 314 63 10 chr11 23396725 23396932 -127386621 - MIR SINE MIR -43 219 2 361 221 39 10 chr11 23396936 23397040 -127386513 + MER103 DNA DNA 58 164 -2 252 333 61 50 chr11 23397335 23397515 -127386038 - MIR SINE MIR -32 230 49 330 26 0 0 chr11 23398649 23398688 -127384865 + (CA)n Simple_repeat Simple_repeat 1 39 0 28 29 0 0 chr11 23399195 23399230 -127384323 + AT_rich Low_complexity Low_complexity 1 35 0 2195 76 0 7 chr11 23399309 23399597 -127383956 + AluY SINE Alu 4 289 -22 191 167 24 0 chr11 23400203 23400245 -127383308 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 4069 221 19 5 chr11 23400565 23401525 -127382028 + L1 LINE L1 2321 3293 -2853 2341 85 7 0 chr11 23401539 23401833 -127381720 + AluY SINE Alu 4 299 -12 2109 156 48 16 chr11 23401838 23402217 -127381336 - MSTB LTR MaLR -35 391 1 231 143 0 48 chr11 23402321 23402363 -127381190 + Charlie8 DNA MER1_type 309 348 -2069 312 294 78 10 chr11 23402365 23402467 -127381086 - MIR SINE MIR -148 114 6 200 348 7 58 chr11 23403171 23403309 -127380244 - MIR SINE MIR -61 201 71 26 64 0 0 chr11 23403316 23403363 -127380190 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr11 23405611 23405632 -127377921 + AT_rich Low_complexity Low_complexity 1 21 0 333 80 0 0 chr11 23405935 23405985 -127377568 - MADE1 DNA Mariner 0 80 31 2385 125 3 5 chr11 23405987 23406363 -127377190 + L1PA10 LINE L1 5793 6167 -1 24 32 0 0 chr11 23407640 23407671 -127375882 + AT_rich Low_complexity Low_complexity 1 31 0 1745 53 0 0 chr11 23409427 23409636 -127373917 - AluY SINE Alu -8 303 95 2350 91 0 0 chr11 23410034 23410331 -127373222 - AluSq SINE Alu -16 297 1 294 309 13 81 chr11 23410842 23410991 -127372562 - L2 LINE L2 -217 3055 2917 360 298 114 30 chr11 23411038 23411300 -127372253 - L2 LINE L2 -387 2927 2644 244 250 100 0 chr11 23412156 23412216 -127371337 - L2 LINE L2 -25 3288 3223 668 213 161 29 chr11 23412267 23412441 -127371112 - MER58A DNA MER1_type -27 197 1 256 313 0 0 chr11 23413466 23413530 -127370023 - L2 LINE L2 -4 3309 3246 242 327 114 53 chr11 23413694 23414107 -127369446 - L2 LINE L2 -417 2897 2460 310 298 123 9 chr11 23414196 23414310 -127369243 + MIR SINE MIR 48 174 -88 535 301 145 44 chr11 23414312 23414678 -127368875 - L2 LINE L2 -18 3295 2893 214 191 0 0 chr11 23415076 23415118 -127368435 + T-rich Low_complexity Low_complexity 1 42 0 2290 107 0 3 chr11 23415453 23415761 -127367792 + AluSq SINE Alu 1 307 -6 192 281 0 112 chr11 23416053 23416142 -127367411 + L2 LINE L2 3231 3309 -4 1911 110 11 4 chr11 23416254 23416518 -127367035 + AluSc SINE Alu 1 266 -43 373 141 28 14 chr11 23416542 23416613 -127366940 + Alu SINE Alu 228 299 -1 739 259 5 0 chr11 23468236 23468441 -127315112 - L1P LINE L1 -860 5286 5081 1396 73 10 21 chr11 23468445 23468637 -127314916 + MER50-int LTR ERV1 700 889 -6316 2161 208 28 6 chr11 23468637 23469143 -127314410 - L1P LINE L1 -1057 5089 4573 234 265 108 20 chr11 23469365 23469467 -127314086 + MIR SINE MIR 60 170 -92 302 355 14 7 chr11 23469526 23469667 -127313886 - L3 LINE CR1 -380 1197 1056 312 255 147 34 chr11 23471821 23471942 -127311611 - MER5B DNA MER1_type -4 185 38 374 252 122 48 chr11 23472134 23472281 -127311272 + MIR SINE MIR 57 214 -48 233 287 19 37 chr11 23472327 23472435 -127311118 + (CATATA)n Simple_repeat Simple_repeat 2 107 0 189 107 0 0 chr11 23472499 23472527 -127311026 + (A)n Simple_repeat Simple_repeat 1 28 0 761 190 95 62 chr11 23473270 23473481 -127310072 - MER20 DNA MER1_type -1 218 1 21 0 0 0 chr11 23473520 23473541 -127310012 + AT_rich Low_complexity Low_complexity 1 21 0 465 298 24 67 chr11 23473639 23473900 -127309653 + MIR SINE MIR 14 262 0 267 286 43 0 chr11 23473895 23473965 -127309588 - L2 LINE L2 -6 3266 3194 * 24 0 0 0 chr11 23474013 23474037 -127309516 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr11 23474205 23474228 -127309325 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 372 22 0 0 chr11 23474227 23474272 -127309281 + (CA)n Simple_repeat Simple_repeat 2 46 0 242 158 24 73 chr11 23474277 23474359 -127309194 + L1MC4 LINE L1 6626 6703 -1339 2427 65 0 13 chr11 23474378 23474688 -127308865 - AluY SINE Alu -5 306 1 466 34 0 0 chr11 23475233 23475292 -127308261 + L1PA6 LINE L1 6091 6149 -5 199 301 90 38 chr11 23475320 23475453 -127308100 + L2 LINE L2 2909 3048 -224 270 68 45 0 chr11 23475514 23475558 -127307995 - AluSc SINE Alu -1 298 253 1019 87 0 0 chr11 23475559 23475686 -127307867 - AluSq/x SINE Alu -186 127 1 22 70 0 0 chr11 23475733 23475776 -127307777 + AT_rich Low_complexity Low_complexity 1 43 0 2123 127 3 13 chr11 23477916 23478230 -127305323 + AluSq SINE Alu 1 311 -2 914 216 76 113 chr11 23479140 23479625 -127303928 - HAL1 LINE L1 0 2507 2041 366 292 17 25 chr11 23479894 23480014 -127303539 - L2 LINE L2 0 3313 3195 661 201 50 22 chr11 23480036 23480215 -127303338 - MER53 DNA DNA -5 184 1 1328 308 42 19 chr11 23480252 23480875 -127302678 - L2 LINE L2 -151 3162 2530 456 289 103 64 chr11 23480995 23481451 -127302102 - HAL1 LINE L1 -1987 520 47 194 301 97 39 chr11 23482512 23482615 -127300938 + MIR SINE MIR 81 189 -73 532 315 55 5 chr11 23482934 23483134 -127300419 + MIR SINE MIR 4 213 -49 503 249 83 12 chr11 23483200 23483369 -127300184 - MIR SINE MIR -15 247 67 201 300 0 0 chr11 23484381 23484431 -127299122 + CT-rich Low_complexity Low_complexity 2 51 0 270 317 50 10 chr11 23484727 23484828 -127298725 - L2 LINE L2 0 3272 3168 183 80 0 0 chr11 23484823 23484848 -127298705 + L2 LINE L2 3283 3307 -6 * 256 234 0 0 chr11 23485014 23485061 -127298492 + MER91 DNA MER1_type 94 140 0 21 0 0 0 chr11 23486374 23486395 -127297158 + AT_rich Low_complexity Low_complexity 1 21 0 2251 58 6 37 chr11 23487067 23487392 -127296161 + L1PA5 LINE L1 5840 6154 0 1687 173 65 0 chr11 23487690 23488014 -127295539 + MER7A DNA MER2_type 2 344 -2 434 280 3 0 chr11 23488464 23488582 -127294971 + MIR SINE MIR 50 145 -63 269 355 74 32 chr11 23489028 23489526 -127294027 - L2 LINE L2 -1037 2277 1759 4189 166 5 34 chr11 23490155 23490545 -127293008 - L1MA8 LINE L1 -2 6289 5889 3384 98 46 60 chr11 23490545 23491107 -127292446 - MER41A LTR ERV1 0 554 1 4189 166 5 34 chr11 23491107 23491548 -127292005 - L1MA8 LINE L1 -402 5889 5482 3020 137 18 2 chr11 23492511 23493000 -127290553 - LOR1a LTR ERV1 0 497 1 1646 174 166 39 chr11 23494049 23494402 -127289151 - LOR1b LTR ERV1 0 461 47 2129 104 0 21 chr11 23494402 23494717 -127288836 - AluSx SINE Alu 0 309 1 1646 174 166 39 chr11 23494717 23494771 -127288782 - LOR1b LTR ERV1 -414 47 1 3316 124 12 2 chr11 23494936 23495428 -127288125 - LOR1a LTR ERV1 0 497 1 22 35 0 0 chr11 23498408 23498437 -127285116 + AT_rich Low_complexity Low_complexity 1 29 0 1632 230 74 18 chr11 23498681 23499138 -127284415 - MLT1D LTR MaLR -2 503 21 234 339 129 54 chr11 23499606 23499978 -127283575 + L3 LINE CR1 1134 1533 -44 239 292 0 28 chr11 23500195 23500267 -127283286 - MIR SINE MIR -57 151 82 230 261 87 0 chr11 23500363 23500432 -127283121 - MIR3 SINE MIR -11 197 123 992 222 104 28 chr11 23500669 23501041 -127282512 - L1ME LINE L1 -545 5621 5230 212 128 0 21 chr11 23501081 23501128 -127282425 + (CCCCCT)n Simple_repeat Simple_repeat 2 47 0 1984 124 28 3 chr11 23501156 23501438 -127282115 - AluSx SINE Alu -23 289 1 1567 216 118 14 chr11 23501449 23501888 -127281665 - L1ME LINE L1 -957 5189 4705 5111 174 124 13 chr11 23501916 23503692 -127279861 - L1PA16 LINE L1 -9 6157 4114 904 234 190 5 chr11 23503681 23504087 -127279466 - L1ME LINE L1 -1434 4712 4232 * 2326 91 3 3 chr11 23504413 23504721 -127278832 + AluSp SINE Alu 1 308 -5 186 133 0 0 chr11 23505954 23505984 -127277569 + (TG)n Simple_repeat Simple_repeat 2 31 0 283 96 39 0 chr11 23506022 23506074 -127277479 + (TA)n Simple_repeat Simple_repeat 1 54 0 1833 170 49 95 chr11 23508292 23508664 -127274889 + MER70A LTR ERVL 37 386 -86 1447 168 24 54 chr11 23508664 23508962 -127274591 - AluJb SINE Alu -23 289 1 1833 170 49 95 chr11 23508962 23509041 -127274512 + MER70A LTR ERVL 386 467 -5 180 77 0 0 chr11 23509085 23509111 -127274442 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 298 185 65 0 chr11 23509339 23509431 -127274122 + L1MC4 LINE L1 6606 6703 -1339 242 226 0 47 chr11 23509351 23509457 -127274096 - L1MC4 LINE L1 -1339 6703 6603 * 424 253 88 47 chr11 23509670 23509840 -127273713 + MER5B DNA MER1_type 2 178 0 225 178 0 0 chr11 23511244 23511289 -127272264 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 239 315 14 27 chr11 23511502 23511575 -127271978 + L2 LINE L2 3188 3259 -54 21 71 0 0 chr11 23511889 23511931 -127271622 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr11 23512557 23512581 -127270972 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr11 23512811 23512857 -127270696 + AT_rich Low_complexity Low_complexity 1 46 0 349 286 196 28 chr11 23513310 23513565 -127269988 - L2 LINE L2 -52 3261 2964 595 220 0 0 chr11 23513893 23514034 -127269519 + MER53 DNA DNA 37 177 -12 228 224 41 31 chr11 23514755 23514853 -127268700 + (CCCCG)n Simple_repeat Simple_repeat 1 99 0 417 308 182 0 chr11 23515396 23515539 -127268014 - MER5A DNA MER1_type -6 183 15 216 0 0 0 chr11 23515545 23515569 -127267984 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 538 241 102 81 chr11 23515687 23516031 -127267522 - L1ME1 LINE L1 -2 6164 5814 456 207 62 35 chr11 23516087 23516232 -127267321 + MER67C LTR ERV1 3 151 -559 1831 137 32 0 chr11 23516241 23516525 -127267028 + AluSx SINE Alu 1 293 -19 297 51 0 0 chr11 23516525 23516564 -127266989 + (GGGGA)n Simple_repeat Simple_repeat 4 42 0 389 240 133 31 chr11 23516603 23516799 -127266754 + MER67C LTR ERV1 161 376 -334 778 153 79 16 chr11 23516820 23517009 -127266544 + MER67C LTR ERV1 498 698 -12 2095 150 51 27 chr11 23517258 23517671 -127265882 + MER44D DNA MER2_type 50 527 -78 1803 193 92 57 chr11 23517675 23518167 -127265386 + MER67D LTR ERV1 1 509 -5 858 276 46 81 chr11 23518177 23518505 -127265048 - L1ME1 LINE L1 -63 6103 5765 699 192 0 0 chr11 23518505 23518635 -127264918 + FLAM_A SINE Alu 4 133 0 1219 218 57 7 chr11 23518637 23518917 -127264636 + AluJb SINE Alu 1 294 -18 858 276 46 81 chr11 23518917 23519106 -127264447 - L1ME1 LINE L1 -402 5764 5601 4630 124 54 4 chr11 23519110 23519852 -127263701 + MER4E LTR ERV1 1 779 0 2368 108 11 11 chr11 23519852 23520204 -127263349 + MER4E-int LTR ERV1 1 352 -6406 1303 94 57 66 chr11 23520214 23520255 -127263298 + MER4E-int LTR ERV1 714 754 -6004 2511 47 0 0 chr11 23520255 23520551 -127263002 + AluY SINE Alu 1 296 -15 1303 94 57 66 chr11 23520551 23520903 -127262650 + MER4E-int LTR ERV1 754 1158 -5600 201 74 0 0 chr11 23520908 23520935 -127262618 + (TATG)n Simple_repeat Simple_repeat 2 28 0 2476 121 105 42 chr11 23520952 23521497 -127262056 + MER4E-int LTR ERV1 1766 2344 -4254 1734 167 56 7 chr11 23521491 23521797 -127261756 + MER4B-int LTR ERV1 3767 4087 -2671 * 9676 129 83 31 chr11 23521798 23523561 -127259992 + MER4B-int LTR ERV1 4453 6307 -451 318 80 0 0 chr11 23523561 23523611 -127259942 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1409 128 80 24 chr11 23523620 23523728 -127259825 + MER4B-int LTR ERV1 6381 6482 -276 198 0 0 0 chr11 23523728 23523750 -127259803 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 1409 128 80 24 chr11 23523750 23523891 -127259662 + MER4B-int LTR ERV1 6482 6644 -114 258 56 0 0 chr11 23523891 23523927 -127259626 + (CAA)n Simple_repeat Simple_repeat 3 38 0 4808 167 28 3 chr11 23524350 23525199 -127258354 - Tigger1 DNA MER2_type -1547 871 2 2143 253 76 16 chr11 23525211 23526093 -127257460 + L1M4 LINE L1 2264 3092 -3054 294 29 0 0 chr11 23526093 23526128 -127257425 + (TA)n Simple_repeat Simple_repeat 1 35 0 2245 112 7 0 chr11 23526128 23526432 -127257121 - AluSc SINE Alu -3 306 1 2143 253 76 16 chr11 23526432 23526522 -127257031 + L1M4 LINE L1 3091 3295 -2851 207 129 43 21 chr11 23526584 23526677 -127256876 + (TA)n Simple_repeat Simple_repeat 1 95 0 547 276 26 0 chr11 23526681 23526837 -127256716 + L1M4 LINE L1 3485 3644 -2502 620 254 51 83 chr11 23526838 23527318 -127256235 - MER74A LTR ERVL -1 557 21 398 167 39 0 chr11 23527318 23527396 -127256157 + L1MA5 LINE L1 6220 6300 0 357 295 77 19 chr11 23527711 23527867 -127255686 - L1MEc LINE L1 -4891 1326 1162 1608 112 0 9 chr11 23527874 23528106 -127255447 + THE1B LTR MaLR 1 230 -134 1051 128 19 0 chr11 23528135 23528146 -127255407 + THE1B LTR MaLR 206 215 -149 1742 153 28 21 chr11 23528146 23528433 -127255120 + AluSx SINE Alu 11 299 -13 1051 128 19 0 chr11 23528433 23528577 -127254976 + THE1B LTR MaLR 215 364 0 9920 129 41 3 chr11 23528577 23530099 -127253454 + THE1B-int LTR MaLR 1 1580 0 2170 148 25 8 chr11 23530099 23530457 -127253096 + THE1B LTR MaLR 1 364 0 1380 283 81 60 chr11 23530483 23531619 -127251934 - L1MEc LINE L1 -4996 1250 107 23 0 0 0 chr11 23532476 23532499 -127251054 + AT_rich Low_complexity Low_complexity 1 23 0 2176 124 0 0 chr11 23533085 23533384 -127250169 + AluSx SINE Alu 1 299 -13 303 277 101 0 chr11 23533706 23533825 -127249728 + MER5C DNA MER1_type 1 131 -193 3196 142 14 11 chr11 23534446 23534681 -127248872 - L1PB1 LINE L1 -3 6148 5915 3462 130 71 14 chr11 23534681 23535259 -127248294 - LTR9 LTR ERV1 -1 611 1 3196 142 14 11 chr11 23535259 23535573 -127247980 - L1PB1 LINE L1 -236 5915 5597 333 0 0 0 chr11 23535864 23535901 -127247652 + (TA)n Simple_repeat Simple_repeat 1 37 0 919 83 0 0 chr11 23535901 23536022 -127247531 - AluY SINE Alu -4 307 187 9115 234 59 42 chr11 23536468 23537097 -127246456 + L1ME3 LINE L1 1 617 -5947 3120 139 85 57 chr11 23537097 23537803 -127245750 + LTR8A LTR ERV1 2 727 0 9115 234 59 42 chr11 23537803 23542554 -127240999 + L1ME3 LINE L1 617 5528 -1036 183 386 11 11 chr11 23542556 23542644 -127240909 - MIR SINE MIR -155 107 20 739 291 62 26 chr11 23543546 23543935 -127239618 + L1ME3 LINE L1 5963 6365 -215 1828 121 19 59 chr11 23545907 23546229 -127237324 - AluSx SINE Alu -3 309 1 487 303 100 17 chr11 23546409 23546640 -127236913 - MIR SINE MIR -10 252 3 335 321 42 38 chr11 23547867 23548079 -127235474 + MIR SINE MIR 50 262 0 207 304 18 0 chr11 23548104 23548160 -127235393 - L3 LINE CR1 -11 1566 1510 336 335 139 14 chr11 23548215 23548424 -127235129 - L3 LINE CR1 -75 1502 1268 534 241 190 128 chr11 23548429 23548775 -127234778 - LTR50 LTR ERVL -212 583 189 255 61 0 0 chr11 23548775 23548808 -127234745 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 534 241 190 128 chr11 23548808 23549009 -127234544 - LTR50 LTR ERVL -606 189 2 1885 197 50 24 chr11 23549056 23549313 -127234240 + MSTB1 LTR MaLR 1 275 -157 2298 86 3 7 chr11 23549313 23549614 -127233939 - AluSc SINE Alu -9 300 1 1885 197 50 24 chr11 23549614 23549777 -127233776 + MSTB1 LTR MaLR 275 432 0 895 246 188 65 chr11 23549887 23550350 -127233203 + MLT2D LTR ERVL 1 520 0 591 220 28 0 chr11 23550644 23550785 -127232768 + MER103 DNA DNA 11 155 -11 4889 169 80 29 chr11 23550864 23551834 -127231719 + LTR28 LTR ERV1 1 1020 0 275 309 31 10 chr11 23552901 23552998 -127230555 - L2 LINE L2 0 3272 3174 586 254 85 12 chr11 23553042 23553207 -127230346 + MER45A DNA AcHobo 1 177 -1 445 71 29 0 chr11 23553234 23553304 -127230249 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 694 353 86 16 chr11 23553386 23553817 -127229736 - L3 LINE CR1 -699 878 418 1960 147 17 0 chr11 23553919 23554218 -127229335 + AluSx SINE Alu 1 304 -8 1218 198 180 49 chr11 23554302 23554747 -127228806 - MLT1D LTR MaLR 0 505 3 301 100 0 0 chr11 23555031 23555071 -127228482 - AluJ/FLAM SINE Alu -203 99 60 1071 189 44 22 chr11 23555071 23555299 -127228254 + AluJb SINE Alu 71 303 -9 1640 143 68 0 chr11 23556679 23556989 -127226564 - AluSx SINE Alu 0 328 1 21 0 0 0 chr11 23557146 23557167 -127226386 + AT_rich Low_complexity Low_complexity 1 21 0 1144 171 22 0 chr11 23559802 23560030 -127223523 + L1MA4 LINE L1 6062 6294 -6 23 33 0 0 chr11 23560839 23560869 -127222684 + AT_rich Low_complexity Low_complexity 1 30 0 285 359 63 30 chr11 23561799 23562036 -127221517 + L2 LINE L2 2618 2862 -452 181 229 57 57 chr11 23562084 23562154 -127221399 + L2 LINE L2 3185 3254 -59 358 315 142 0 chr11 23562380 23562542 -127221011 + L3 LINE CR1 1385 1569 -8 714 231 31 12 chr11 23563165 23563325 -127220228 - FRAM SINE Alu -21 155 1 429 315 52 24 chr11 23563390 23563641 -127219912 + L1MC4a LINE L1 5679 5936 -1872 556 49 12 12 chr11 23565126 23565207 -127218346 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 366 211 62 31 chr11 23565499 23565627 -127217926 - L1ME4a LINE L1 -223 5898 5767 353 171 14 14 chr11 23565680 23565750 -127217803 - MLT1K LTR MaLR 0 588 519 502 211 18 9 chr11 23565887 23565996 -127217557 - MER81 DNA DNA -2 112 3 2391 100 0 0 chr11 23566146 23566456 -127217097 + AluSg SINE Alu 1 310 0 300 291 8 68 chr11 23566982 23567099 -127216454 + L2 LINE L2 3141 3250 -22 29 47 0 0 chr11 23567750 23567793 -127215760 + AT_rich Low_complexity Low_complexity 1 43 0 1987 133 33 0 chr11 23568045 23568173 -127215380 + AluSx SINE Alu 1 123 -189 216 0 0 0 chr11 23568173 23568197 -127215356 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1987 133 33 0 chr11 23568197 23568370 -127215183 + AluSx SINE Alu 123 312 0 1966 121 0 0 chr11 23568475 23568747 -127214806 - AluSx SINE Alu -17 295 24 253 363 159 0 chr11 23568860 23568973 -127214580 + MIR3 SINE MIR 30 160 -48 1776 171 22 39 chr11 23569783 23570146 -127213407 + L1MDa LINE L1 6 362 -6178 1226 264 19 28 chr11 23570150 23570620 -127212933 + L1 LINE L1 2367 2832 -3314 1532 237 11 25 chr11 23570632 23570990 -127212563 - MLT1A1 LTR MaLR -12 353 1 2638 270 84 87 chr11 23571000 23573339 -127210214 + L1 LINE L1 2839 5169 -977 224 308 83 8 chr11 23573919 23574039 -127209514 + L2 LINE L2 3183 3311 -2 830 88 0 16 chr11 23574305 23574430 -127209123 - L1PB1 LINE L1 0 6151 6029 635 289 161 23 chr11 23575873 23576215 -127207338 + MLT1L LTR MaLR 225 613 -2 2303 114 0 0 chr11 23576731 23577037 -127206516 + AluSg SINE Alu 3 308 -2 1009 298 57 61 chr11 23577569 23578075 -127205478 - LTR67 LTR ERVL 0 557 54 712 174 55 119 chr11 23578081 23578282 -127205271 + MER20 DNA MER1_type 32 219 0 2270 178 14 14 chr11 23578444 23578870 -127204683 - MSTB LTR MaLR 0 426 1 182 345 55 9 chr11 23578892 23579002 -127204551 - MIR SINE MIR -147 115 1 281 287 19 46 chr11 23579961 23580069 -127203484 - MIR SINE MIR -60 202 98 225 197 148 0 chr11 23580429 23580490 -127203063 - MLT1H LTR MaLR -48 501 432 301 241 82 72 chr11 23580583 23580647 -127202906 - MER112 DNA MER1_type -5 255 193 2435 112 22 3 chr11 23580647 23581004 -127202549 - THE1B LTR MaLR 0 364 1 301 241 82 72 chr11 23581004 23581146 -127202407 - MER112 DNA MER1_type -67 193 47 2211 87 10 7 chr11 23581264 23581564 -127201989 + AluY SINE Alu 1 301 -10 181 297 27 40 chr11 23582477 23582551 -127201002 + MIR SINE MIR 67 139 -69 282 408 83 0 chr11 23582794 23582951 -127200602 - L2 LINE L2 0 3272 3103 189 298 183 0 chr11 23583242 23583346 -127200207 - MIR SINE MIR -11 251 129 663 296 40 8 chr11 23584069 23584319 -127199234 + MIR SINE MIR 2 259 -3 375 31 0 47 chr11 23584343 23584407 -127199146 + (TA)n Simple_repeat Simple_repeat 1 61 0 506 251 44 101 chr11 23584549 23584776 -127198777 - MIR SINE MIR -1 261 48 454 380 10 0 chr11 23585663 23585868 -127197685 - LTR33 LTR ERVL -310 211 5 22 56 0 0 chr11 23587486 23587522 -127196031 + AT_rich Low_complexity Low_complexity 1 36 0 229 277 0 0 chr11 23587526 23587573 -127195980 + MER113 DNA MER1_type? 475 521 0 22 35 0 0 chr11 23587984 23588013 -127195540 + AT_rich Low_complexity Low_complexity 1 29 0 216 135 0 0 chr11 23588098 23588135 -127195418 + (TATG)n Simple_repeat Simple_repeat 1 37 0 295 323 61 23 chr11 23588269 23588464 -127195089 + MLT1J LTR MaLR 319 611 -4 5667 155 9 5 chr11 23588576 23589541 -127194012 - L1MA8 LINE L1 0 6291 5323 274 290 131 51 chr11 23589731 23589907 -127193646 - MIR SINE MIR -6 256 67 292 87 22 0 chr11 23589973 23590019 -127193534 - MADE1 DNA Mariner -33 47 1 1505 304 134 26 chr11 23590024 23590765 -127192788 + L2 LINE L2 1853 2673 -641 747 316 57 60 chr11 23590836 23591272 -127192281 + L2 LINE L2 2875 3309 -4 286 313 27 41 chr11 23591348 23591495 -127192058 - MER5A DNA MER1_type -16 173 29 1299 251 115 50 chr11 23591574 23592115 -127191438 + MLT1E2 LTR MaLR 51 626 0 26 50 0 0 chr11 23592458 23592498 -127191055 + AT_rich Low_complexity Low_complexity 1 40 0 216 339 96 17 chr11 23592591 23592706 -127190847 + MER91C DNA MER1_type 17 140 0 968 247 188 3 chr11 23592773 23593081 -127190472 + MLT1A1 LTR MaLR 1 365 0 2224 102 0 6 chr11 23593103 23593416 -127190137 + AluY SINE Alu 1 311 0 201 381 67 0 chr11 23593470 23593575 -127189978 + MIR3 SINE MIR 87 198 -10 18132 30 2 0 chr11 23593700 23596646 -127186907 + L1PA3 LINE L1 3207 6152 -3 22 35 0 0 chr11 23597458 23597487 -127186066 + AT_rich Low_complexity Low_complexity 1 29 0 771 230 86 19 chr11 23597507 23597716 -127185837 - L1ME1 LINE L1 -6 6160 5938 292 211 0 70 chr11 23597873 23597944 -127185609 - MLT2D LTR ERVL -355 59 1 1701 231 58 21 chr11 23597944 23598560 -127184993 - L1M4 LINE L1 -1278 4868 4230 25 0 0 0 chr11 23599253 23599278 -127184275 + AT_rich Low_complexity Low_complexity 1 25 0 1360 212 51 66 chr11 23599945 23600397 -127183156 - MER65A LTR ERV1 0 445 1 195 42 0 0 chr11 23600482 23600506 -127183047 + (TG)n Simple_repeat Simple_repeat 1 24 0 453 297 61 93 chr11 23600544 23600985 -127182568 - MLT1H LTR MaLR 0 549 123 182 392 0 14 chr11 23601061 23601135 -127182418 + MIR3 SINE MIR 105 177 -31 23 0 0 0 chr11 23601246 23601269 -127182284 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr11 23601892 23601914 -127181639 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 2286 80 3 0 chr11 23603254 23603542 -127180011 - AluSc SINE Alu -15 294 6 203 227 15 0 chr11 23603550 23603616 -127179937 + CT-rich Low_complexity Low_complexity 2 68 0 600 136 12 206 chr11 23603738 23603981 -127179572 + L1MA9 LINE L1 6117 6312 0 581 313 21 38 chr11 23604407 23604441 -127179112 - L1ME1 LINE L1 -26 6140 6107 5052 88 14 3 chr11 23604441 23605155 -127178398 - LTR30 LTR ERV1 0 722 1 581 313 21 38 chr11 23605155 23605408 -127178145 - L1ME1 LINE L1 -59 6107 5858 890 174 13 0 chr11 23605420 23605569 -127177984 - FRAM SINE Alu -10 166 16 239 263 45 0 chr11 23605602 23605735 -127177818 - L1MDb LINE L1 -4042 2364 2226 * 2244 233 63 49 chr11 23605731 23605950 -127177603 - L1MDb LINE L1 -4552 1854 1640 796 219 46 46 chr11 23605950 23606169 -127177384 - MER20 DNA MER1_type 0 219 1 2244 233 63 49 chr11 23606169 23606697 -127176856 - L1MDb LINE L1 -4766 1640 1121 1941 138 0 0 chr11 23606697 23607000 -127176553 - AluSx SINE Alu 0 303 1 2244 233 63 49 chr11 23607000 23607220 -127176333 - L1MDb LINE L1 -5285 1121 901 621 204 0 36 chr11 23607220 23607357 -127176196 - FLAM_C SINE Alu 0 133 2 2244 233 63 49 chr11 23607357 23607478 -127176075 - L1MDb LINE L1 -5505 901 783 269 369 8 0 chr11 23608220 23608350 -127175203 - L1MDb LINE L1 -5935 461 331 234 280 42 56 chr11 23608641 23608784 -127174769 + MER117 DNA MER1_type 6 146 -51 313 363 62 0 chr11 23609142 23609302 -127174251 + MER20B DNA MER1_type 2 171 -612 1827 245 85 18 chr11 23609383 23610041 -127173512 + Zaphod DNA AcHobo 178 879 -3152 1321 213 40 4 chr11 23611311 23611433 -127172120 + AluJo SINE Alu 1 117 -195 450 0 0 0 chr11 23611433 23611483 -127172070 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 1321 213 40 4 chr11 23611483 23611632 -127171921 + AluJo SINE Alu 117 282 -30 22 70 0 0 chr11 23611994 23612037 -127171516 + AT_rich Low_complexity Low_complexity 1 43 0 7825 85 3 27 chr11 23662493 23663639 -127119914 + L1P LINE L1 3282 4400 -1746 6262 117 8 14 chr11 23663739 23664780 -127118773 + L1P LINE L1 2241 3274 -2872 7183 129 2 30 chr11 23664880 23666060 -127117493 - L1P LINE L1 -4439 1707 561 1889 143 61 28 chr11 23666459 23666822 -127116731 - THE1C LTR MaLR 0 375 1 2239 117 0 0 chr11 23666968 23667266 -127116287 + AluSx SINE Alu 1 298 -14 32 26 0 0 chr11 23667276 23667315 -127116238 + AT_rich Low_complexity Low_complexity 1 39 0 894 193 13 25 chr11 23668943 23669182 -127114371 + L1P LINE L1 5127 5362 -784 2233 52 0 0 chr11 23669213 23669480 -127114073 - AluY SINE Alu -44 267 1 903 76 0 0 chr11 23669878 23669997 -127113556 - AluSp/q SINE Alu -1 312 194 347 298 161 18 chr11 23670250 23670468 -127113085 - MIR SINE MIR -12 250 2 4139 241 58 12 chr11 23671251 23672510 -127111043 - L1M4 LINE L1 -1827 4319 3003 2817 13 0 0 chr11 23672633 23672943 -127110610 + AluYa5 SINE Alu 1 310 -1 2544 52 0 10 chr11 23672992 23673300 -127110253 + AluY SINE Alu 1 305 -6 273 29 0 0 chr11 23674665 23674699 -127108854 + (TG)n Simple_repeat Simple_repeat 2 35 0 913 177 79 10 chr11 23675149 23675352 -127108201 + MER20 DNA MER1_type 1 217 -2 2424 172 21 34 chr11 23675621 23676091 -127107462 - L1MCa LINE L1 -5943 483 20 231 275 14 0 chr11 23677098 23677167 -127106386 + MIR3 SINE MIR 126 195 -13 2141 108 3 10 chr11 23677503 23677808 -127105745 + AluSp SINE Alu 1 303 -10 252 312 136 40 chr11 23678295 23678380 -127105173 + MIR3 SINE MIR 48 150 -58 2293 188 48 30 chr11 23678380 23678876 -127104677 - MLT1D LTR MaLR 0 505 1 252 312 136 40 chr11 23678876 23678915 -127104638 + MIR3 SINE MIR 150 184 -24 288 204 0 19 chr11 23679943 23679997 -127103556 + FLAM_A SINE Alu 67 119 -14 21 0 0 0 chr11 23680059 23680080 -127103473 + AT_rich Low_complexity Low_complexity 1 21 0 2123 108 7 0 chr11 23680273 23680570 -127102983 - AluSq SINE Alu -1 312 14 2856 65 35 5 chr11 23680638 23681036 -127102517 + L1PA8 LINE L1 5763 6172 0 213 308 31 0 chr11 23681196 23681261 -127102292 - MIR3 SINE MIR -19 189 123 13632 123 20 9 chr11 23683044 23685143 -127098410 - Tigger1 DNA MER2_type 0 2418 298 2426 72 0 86 chr11 23685243 23685662 -127097891 - L1P LINE L1 -3638 2508 2126 * 7810 133 11 28 chr11 23685643 23686982 -127096571 - L1P LINE L1 -3869 2277 962 469 286 40 29 chr11 23687186 23687361 -127096192 - MIR SINE MIR -79 183 7 14805 70 8 14 chr11 23689306 23691319 -127092234 + L1P LINE L1 3249 5248 -898 391 301 85 22 chr11 23691424 23691579 -127091974 - MIR SINE MIR -69 139 30 24 111 0 0 chr11 23692074 23692182 -127091371 + AT_rich Low_complexity Low_complexity 1 108 0 444 274 157 24 chr11 23692712 23692967 -127090586 + L3 LINE CR1 423 711 -866 391 165 0 143 chr11 23693646 23693779 -127089774 - Charlie7 DNA MER1_type -2 2610 2497 1220 244 102 8 chr11 23695146 23695528 -127088025 + LTR52 LTR ERVL 1 418 -3 4014 128 47 69 chr11 23695539 23696341 -127087212 + LTR1 LTR ERV1 1 785 0 313 231 68 116 chr11 23696348 23696495 -127087058 + L2 LINE L2 3169 3308 -5 2301 143 78 5 chr11 23696640 23697039 -127086514 - MSTA LTR MaLR 0 428 1 3365 61 0 0 chr11 23698918 23699343 -127084210 - L1PA5 LINE L1 -11 6143 5719 4681 219 31 21 chr11 23699807 23701567 -127081986 + L1PA15-16 LINE L1 2077 3838 -3011 883 216 4 4 chr11 23701534 23701766 -127081787 + L1MA4 LINE L1 3971 4202 -2647 * 10924 159 19 14 chr11 23701885 23703911 -127079642 + L1P LINE L1 1531 3565 -2581 5390 166 26 14 chr11 23704011 23705740 -127077813 + L1MA4 LINE L1 5248 6997 -6 2020 127 0 26 chr11 23705750 23706058 -127077495 + AluSx SINE Alu 1 300 -12 2250 75 4 0 chr11 23706075 23706356 -127077197 + AluY SINE Alu 1 322 0 306 0 50 0 chr11 23706356 23706396 -127077157 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 239 326 52 7 chr11 23707481 23707616 -127075937 + L1M4 LINE L1 3770 3910 -2236 24 0 0 0 chr11 23707641 23707665 -127075888 + AT_rich Low_complexity Low_complexity 1 24 0 305 379 37 23 chr11 23707793 23708007 -127075546 - MLT1I LTR MaLR -130 279 63 22 0 0 0 chr11 23708190 23708212 -127075341 + AT_rich Low_complexity Low_complexity 1 22 0 1691 168 90 13 chr11 23708303 23708613 -127074940 - MER1B DNA MER1_type 0 337 4 399 320 63 17 chr11 23710023 23710198 -127073355 - MLT2F LTR ERVL -480 183 1 710 255 81 67 chr11 23710201 23710365 -127073188 - ERVL-F LTR ERVL -13 5751 5591 2118 82 10 17 chr11 23710365 23710659 -127072894 - AluY SINE Alu -19 292 1 710 255 81 67 chr11 23710659 23710929 -127072624 - ERVL-F LTR ERVL -173 5591 5311 1865 137 70 6 chr11 23710963 23711276 -127072277 + MER1B DNA MER1_type 3 335 -2 2750 283 56 12 chr11 23711277 23712105 -127071448 - ERVL-F LTR ERVL -541 5223 4360 5877 113 71 0 chr11 23712302 23713243 -127070310 - L1PA10 LINE L1 0 6168 5207 28 0 0 0 chr11 23713337 23713365 -127070188 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr11 23713384 23713412 -127070141 + AT_rich Low_complexity Low_complexity 1 28 0 1664 191 30 64 chr11 23713485 23713889 -127069664 + MLT1B LTR MaLR 1 390 0 184 293 0 35 chr11 23714376 23714434 -127069119 - L2 LINE L2 -2 3270 3215 214 308 0 0 chr11 23715334 23715386 -127068167 - L2 LINE L2 -5 3267 3216 1996 97 17 24 chr11 23715702 23715990 -127067563 + AluSc SINE Alu 3 288 -21 192 343 36 58 chr11 23716305 23716442 -127067111 + L2 LINE L2 3180 3313 0 26 0 0 0 chr11 23717060 23717086 -127066467 + AT_rich Low_complexity Low_complexity 1 26 0 397 321 38 13 chr11 23717803 23717962 -127065591 + MIR SINE MIR 7 169 -93 196 258 48 65 chr11 23717999 23718061 -127065492 + L2 LINE L2 3191 3251 -21 482 0 0 17 chr11 23718062 23718121 -127065432 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 363 236 0 56 chr11 23718207 23718296 -127065257 + L2 LINE L2 3189 3272 0 560 246 34 0 chr11 23718513 23718631 -127064922 - L1M4b LINE L1 -6727 132 11 2025 129 3 0 chr11 23718927 23719213 -127064340 - AluSx SINE Alu -20 292 6 762 187 6 24 chr11 23719700 23719866 -127063687 - L1MA7 LINE L1 -64 6227 6065 509 159 28 0 chr11 23720149 23720256 -127063297 + L1MB8 LINE L1 6069 6178 0 180 319 0 0 chr11 23720516 23720563 -127062990 - L2 LINE L2 -23 3290 3244 2113 115 0 0 chr11 23720785 23721072 -127062481 + AluSg SINE Alu 1 287 -23 2066 127 0 19 chr11 23721209 23721517 -127062036 - AluSp SINE Alu -11 302 1 186 424 0 0 chr11 23721530 23721615 -127061938 - L2 LINE L2 -1 3271 3187 739 42 0 10 chr11 23722049 23722145 -127061408 + L1P2 LINE L1 5593 5687 -468 3054 198 15 52 chr11 23722222 23723091 -127060462 + LTR5 LTR ERVK 133 969 0 2506 127 5 16 chr11 23723091 23723470 -127060083 + MER1A DNA MER1_type 53 427 -102 492 322 58 6 chr11 23723576 23723747 -127059806 + MIR SINE MIR 24 203 -59 224 167 21 0 chr11 23723747 23723795 -127059758 + (TG)n Simple_repeat Simple_repeat 1 49 0 239 273 11 0 chr11 23723795 23723883 -127059670 + L1MC4 LINE L1 6615 6703 -1339 285 102 51 0 chr11 23723890 23723949 -127059604 + (TA)n Simple_repeat Simple_repeat 1 62 0 302 333 69 6 chr11 23724514 23724673 -127058880 - MIR SINE MIR -10 252 84 265 295 57 25 chr11 23724947 23725069 -127058484 + L1M4 LINE L1 4808 4933 -1213 23 54 0 0 chr11 23725120 23725157 -127058396 + AT_rich Low_complexity Low_complexity 1 37 0 621 310 101 42 chr11 23725199 23725751 -127057802 - L1MEc LINE L1 -4132 2431 1913 2110 95 24 20 chr11 23725751 23726047 -127057506 + AluSx SINE Alu 1 297 -15 621 310 101 42 chr11 23726047 23726410 -127057143 - L1MEc LINE L1 -4650 1913 1286 458 290 148 53 chr11 23726416 23726830 -127056723 - L1MEc LINE L1 -4983 1420 971 354 217 0 0 chr11 23727724 23727784 -127055769 - Tigger7 DNA MER2_type 0 2487 2428 2782 190 23 29 chr11 23727793 23728319 -127055234 - Tigger7 DNA MER2_type -1964 523 1 510 103 23 0 chr11 23728939 23729026 -127054527 - L1MA5A LINE L1 0 6297 6209 250 160 0 0 chr11 23729135 23729185 -127054368 + (TA)n Simple_repeat Simple_repeat 1 50 0 921 133 38 0 chr11 23729185 23729343 -127054210 - L1MA5A LINE L1 -92 6205 6042 216 297 94 43 chr11 23729632 23729770 -127053783 + MIR SINE MIR 118 262 0 453 250 88 25 chr11 23730108 23730268 -127053285 - MIR SINE MIR -50 212 43 1876 150 0 16 chr11 23730299 23730606 -127052947 - AluJo SINE Alu -10 302 1 1496 173 24 79 chr11 23730877 23731206 -127052347 - AluJo SINE Alu -1 311 1 2345 49 0 0 chr11 23731223 23731510 -127052043 - L1P LINE L1 -5495 651 365 7862 31 0 3 chr11 23731510 23733227 -127050326 + L1PA3 LINE L1 4442 6155 0 432 131 0 0 chr11 23733229 23733290 -127050263 - FLAM SINE Alu -23 120 60 1671 104 0 4 chr11 23733758 23733989 -127049564 - AluSq SINE Alu -14 299 70 228 256 35 47 chr11 23734641 23734727 -127048826 + MIR3 SINE MIR 10 94 -114 985 257 81 42 chr11 23734756 23735137 -127048416 + MSTD LTR MaLR 1 396 0 232 329 142 13 chr11 23735156 23735311 -127048242 + MIR SINE MIR 21 195 -67 195 323 15 0 chr11 23735472 23735537 -127048016 + MIR SINE MIR 197 262 0 206 228 139 25 chr11 23737116 23737195 -127046358 + L3 LINE CR1 1479 1566 -11 407 188 0 0 chr11 23738427 23738512 -127045041 - L1M4 LINE L1 -1626 4520 4436 2421 146 41 5 chr11 23738523 23738935 -127044618 - L1PA15 LINE L1 -3 6162 5736 23 0 0 0 chr11 23739082 23739105 -127044448 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr11 23739426 23739461 -127044092 + AT_rich Low_complexity Low_complexity 1 35 0 286 148 0 19 chr11 23739605 23739659 -127043894 - MLT2A1 LTR ERVL -2 451 399 214 104 21 21 chr11 23739661 23739709 -127043844 + (TA)n Simple_repeat Simple_repeat 1 48 0 2718 97 31 5 chr11 23739727 23740117 -127043436 - MLT2A1 LTR ERVL -44 400 1 22 35 0 0 chr11 23740826 23740855 -127042698 + AT_rich Low_complexity Low_complexity 1 29 0 259 339 119 0 chr11 23740909 23741018 -127042535 - MIR SINE MIR -115 147 26 268 362 78 29 chr11 23741240 23741590 -127041963 - L2 LINE L2 -21 3292 2852 442 292 129 17 chr11 23742270 23742510 -127041043 + L1M4 LINE L1 3096 3362 -2784 205 229 0 62 chr11 23742864 23742960 -127040593 + T-rich Low_complexity Low_complexity 2 91 0 703 280 82 8 chr11 23744218 23744475 -127039078 + LTR16B LTR ERVL 187 462 -2 26 0 0 0 chr11 23744858 23744884 -127038669 + AT_rich Low_complexity Low_complexity 1 26 0 2816 124 140 22 chr11 23745661 23746210 -127037343 + LTR18B LTR ERVL 1 614 0 1641 188 0 11 chr11 23746828 23747140 -127036413 - AluJb SINE Alu 0 315 7 446 289 14 14 chr11 23747248 23747390 -127036163 - MER101 LTR ERV1 -55 419 278 1462 196 8 4 chr11 23747390 23747655 -127035898 + AluJo SINE Alu 1 266 -46 296 266 53 21 chr11 23747698 23747792 -127035761 - MER101B LTR ERV1 -276 294 198 338 209 14 39 chr11 23748082 23748172 -127035381 + MER5B DNA MER1_type 100 176 -2 32 91 0 0 chr11 23748253 23748341 -127035212 + AT_rich Low_complexity Low_complexity 1 88 0 1668 253 18 31 chr11 23748434 23748943 -127034610 - Charlie1b DNA MER1_type -15 508 7 4465 81 43 5 chr11 23749393 23750471 -127033082 - MER11A LTR ERVK 0 1266 1 366 258 71 31 chr11 23750614 23750811 -127032742 + L1ME3A LINE L1 5741 5886 -284 24 0 0 0 chr11 23751104 23751128 -127032425 + AT_rich Low_complexity Low_complexity 1 24 0 247 104 42 0 chr11 23751478 23751526 -127032027 + (TA)n Simple_repeat Simple_repeat 1 50 0 304 253 0 24 chr11 23751526 23751609 -127031944 + L1MC4 LINE L1 6612 6692 -1350 737 232 7 0 chr11 23751816 23751967 -127031586 + FRAM SINE Alu 2 153 -23 1031 283 108 26 chr11 23751991 23752454 -127031099 + HAL1 LINE L1 36 536 -1971 2502 50 20 0 chr11 23752532 23752834 -127030719 - AluY SINE Alu -3 308 1 241 283 141 0 chr11 23753028 23753205 -127030348 + HAL1 LINE L1 1956 2157 -350 677 181 84 48 chr11 23753217 23753324 -127030229 + MLT1B LTR MaLR 21 138 -252 2410 168 17 7 chr11 23753324 23753746 -127029807 + MSTB LTR MaLR 1 426 0 677 181 84 48 chr11 23753746 23753804 -127029749 + MLT1B LTR MaLR 138 192 -198 328 299 76 34 chr11 23753846 23754137 -127029416 + HAL1 LINE L1 2128 2430 -77 315 0 0 0 chr11 23754674 23754709 -127028844 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr11 23755113 23755134 -127028419 + AT_rich Low_complexity Low_complexity 1 21 0 554 290 92 39 chr11 23755455 23755814 -127027739 + MLT1J2 LTR MaLR 73 450 0 30 27 0 0 chr11 23755949 23755986 -127027567 + AT_rich Low_complexity Low_complexity 1 37 0 344 264 0 44 chr11 23756170 23756261 -127027292 - L2 LINE L2 0 3313 3227 * 355 366 99 14 chr11 23756257 23756478 -127027075 - MIR SINE MIR -3 259 20 186 299 130 0 chr11 23757406 23757483 -127026070 + MIR SINE MIR 120 206 -56 331 358 93 9 chr11 23757496 23757722 -127025831 + L3 LINE CR1 934 1178 -399 324 0 0 0 chr11 23757738 23757774 -127025779 + (A)n Simple_repeat Simple_repeat 1 36 0 210 293 17 95 chr11 23758144 23758260 -127025293 - L3 LINE CR1 -214 1363 1257 508 376 37 12 chr11 23759072 23759394 -127024159 + L3 LINE CR1 1216 1545 -32 31 0 0 0 chr11 23759679 23759710 -127023843 + AT_rich Low_complexity Low_complexity 1 31 0 2579 232 17 18 chr11 23759710 23760361 -127023192 - L1MD3 LINE L1 -15 7980 7331 789 163 57 0 chr11 23761372 23761513 -127022040 + THE1C LTR MaLR 27 175 -200 1530 266 59 37 chr11 23761619 23762302 -127021251 - L1MC4 LINE L1 -633 7409 6712 6305 184 15 20 chr11 23762346 23763645 -127019908 - Ricksha_b DNA DNA -13 1241 1 226 288 0 0 chr11 23763646 23763726 -127019827 + (TA)n Simple_repeat Simple_repeat 2 81 0 435 236 7 40 chr11 23763785 23763933 -127019620 + L1M4 LINE L1 5101 5243 -903 2823 60 0 3 chr11 23763955 23764319 -127019234 + L1PA6 LINE L1 5792 6154 0 3842 239 55 25 chr11 23764584 23765385 -127018168 + L1MD1 LINE L1 3817 4681 -1465 2180 148 22 6 chr11 23765385 23765743 -127017810 + THE1B LTR MaLR 1 364 0 3842 239 55 25 chr11 23765743 23766359 -127017194 + L1MD1 LINE L1 4681 5277 -869 1180 159 72 24 chr11 23766399 23766650 -127016903 - Ricksha_b DNA DNA -621 633 371 288 122 0 0 chr11 23766650 23766699 -127016854 - L1M4 LINE L1 -992 5154 5106 2504 174 28 21 chr11 23766706 23767247 -127016306 + L1MD1 LINE L1 5334 5878 -364 654 181 0 0 chr11 23767254 23767359 -127016194 - FLAM_C SINE Alu -22 121 17 1269 191 58 20 chr11 23767359 23767652 -127015901 + L1MD1 LINE L1 5938 6241 -1 42 20 0 0 chr11 23768453 23768502 -127015051 + AT_rich Low_complexity Low_complexity 1 49 0 2181 164 18 46 chr11 23768653 23769091 -127014462 + MSTB LTR MaLR 1 426 0 306 270 44 36 chr11 23769148 23769285 -127014268 + L1MC4a LINE L1 5758 5895 -1913 2276 198 6 0 chr11 23770471 23770940 -127012613 + L1P LINE L1 4212 4683 -1463 344 111 16 0 chr11 23771361 23771424 -127012129 + (GA)n Simple_repeat Simple_repeat 1 64 0 1621 126 4 21 chr11 23771428 23771667 -127011886 + AluSg SINE Alu 58 292 -18 204 145 32 16 chr11 23771973 23772035 -127011518 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 23 0 0 0 chr11 23772068 23772091 -127011462 + AT_rich Low_complexity Low_complexity 1 23 0 200 368 56 7 chr11 23772181 23772325 -127011228 + MIR SINE MIR 51 201 -61 826 264 141 6 chr11 23772975 23773301 -127010252 - MER66A LTR ERV1 -10 468 99 279 0 0 0 chr11 23773345 23773376 -127010177 + (T)n Simple_repeat Simple_repeat 1 31 0 2021 165 16 8 chr11 23773961 23774336 -127009217 - L1MA6 LINE L1 -107 6193 5816 534 119 59 20 chr11 23774337 23774438 -127009115 + L1MA5 LINE L1 6195 6299 -1 226 384 34 20 chr11 23774607 23774753 -127008800 + L2 LINE L2 3125 3272 0 28 61 0 0 chr11 23775120 23775169 -127008384 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr11 23775315 23775351 -127008202 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr11 23775524 23775559 -127007994 + AT_rich Low_complexity Low_complexity 1 35 0 187 340 62 0 chr11 23776165 23776262 -127007291 - L2 LINE L2 -217 3055 2953 2350 104 8 6 chr11 23776418 23776772 -127006781 + L1PA13 LINE L1 5804 6158 -5 371 257 103 63 chr11 23776790 23776965 -127006588 + MIR3 SINE MIR 1 182 -26 2265 92 0 7 chr11 23779258 23779551 -127004002 + AluY SINE Alu 1 291 -20 18996 123 14 12 chr11 23779825 23782802 -127000751 + L1PA6 LINE L1 12 2994 -3152 11392 61 4 3 chr11 23782802 23785065 -126998488 + L1PA6 LINE L1 3879 6154 0 196 330 28 38 chr11 23785159 23785265 -126998288 - L2 LINE L2 -788 2526 2422 200 162 0 0 chr11 23785407 23785444 -126998109 + L2 LINE L2 3277 3313 0 2565 39 3 0 chr11 23785688 23785996 -126997557 - AluY SINE Alu -2 309 1 221 258 45 0 chr11 23786177 23786243 -126997310 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 2445 78 3 0 chr11 23786394 23786703 -126996850 - AluSq SINE Alu -1 312 3 191 273 15 30 chr11 23788385 23788451 -126995102 - MER5B DNA MER1_type -26 152 88 202 219 16 62 chr11 23788467 23788531 -126995022 - MER5A DNA MER1_type -12 177 117 * 237 310 31 39 chr11 23788478 23788607 -126994946 + MER5B DNA MER1_type 22 149 -29 1598 208 30 46 chr11 23788898 23789366 -126994187 - MER89 LTR ERV1 0 559 1 363 274 46 57 chr11 23789366 23789541 -126994012 - MIR SINE MIR -78 184 12 1837 141 3 17 chr11 23789716 23790013 -126993540 + AluSx SINE Alu 1 293 -19 376 19 38 0 chr11 23790013 23790066 -126993487 + (TA)n Simple_repeat Simple_repeat 2 56 0 23 33 0 0 chr11 23790653 23790683 -126992870 + AT_rich Low_complexity Low_complexity 1 30 0 1528 145 4 0 chr11 23791342 23791584 -126991969 - Tigger5 DNA MER2_type 0 2323 2081 371 244 13 0 chr11 23791577 23791655 -126991898 - Tigger5 DNA MER2_type -2244 79 1 * 568 158 44 18 chr11 23793392 23793506 -126990047 + L1MD1 LINE L1 6121 6237 -5 719 177 8 0 chr11 23793519 23793643 -126989910 - FLAM_C SINE Alu -18 125 1 350 352 74 22 chr11 23793727 23793957 -126989596 - MIR SINE MIR -6 256 15 418 211 24 38 chr11 23794970 23795069 -126988484 + LTR43 LTR ERV1 179 278 -401 2425 61 3 13 chr11 23795069 23795382 -126988171 + AluY SINE Alu 1 310 -1 418 211 24 38 chr11 23795382 23795431 -126988122 + LTR43 LTR ERV1 278 472 -207 1034 120 21 128 chr11 23798019 23798253 -126985300 - MER2 DNA MER2_type -135 210 2 677 278 123 21 chr11 23798427 23798801 -126984752 + L1MCb LINE L1 100 511 -5534 * 1463 259 28 13 chr11 23798788 23799248 -126984305 + L1M4 LINE L1 3879 4345 -1801 1058 230 104 0 chr11 23799248 23799518 -126984035 - MLT2B2 LTR ERVL -2 513 216 1376 172 13 98 chr11 23799518 23799907 -126983646 + L1MC3 LINE L1 7415 7770 -15 26 0 0 0 chr11 23800612 23800638 -126982915 + AT_rich Low_complexity Low_complexity 1 26 0 186 210 99 49 chr11 23801533 23801614 -126981939 + MIR SINE MIR 86 170 -92 377 23 0 0 chr11 23801961 23802005 -126981548 + THE1C LTR MaLR 1 44 -331 1312 226 0 8 chr11 23802204 23802469 -126981084 - AluJo SINE Alu -49 263 1 186 43 0 0 chr11 23802522 23802545 -126981008 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 22882 176 25 29 chr11 23802545 23809011 -126974542 - L1PA11 LINE L1 -10 6479 2 2111 137 13 53 chr11 23809098 23809477 -126974076 + THE1B LTR MaLR 1 364 0 10805 112 20 4 chr11 23809477 23811032 -126972521 + THE1B-int LTR MaLR 1 1580 0 1980 165 14 30 chr11 23811032 23811402 -126972151 + THE1B LTR MaLR 1 364 0 314 238 40 10 chr11 23811533 23811634 -126971919 + L1ME LINE L1 5685 5788 -374 759 282 77 42 chr11 23811698 23812052 -126971501 - MER77 LTR ERV1 -6 599 177 199 419 67 0 chr11 23812469 23812574 -126970979 + L2 LINE L2 3116 3227 -45 859 298 34 4 chr11 23812617 23812855 -126970698 + MIR SINE MIR 13 257 -5 2142 118 7 3 chr11 23813298 23813603 -126969950 - AluSx SINE Alu -2 310 5 3187 152 48 12 chr11 23814407 23814985 -126968568 - LTR26 LTR ERV1 -4 599 1 876 190 23 56 chr11 23815236 23815452 -126968101 + LOR1a LTR ERV1 289 497 0 208 390 6 41 chr11 23815556 23815728 -126967825 + L2 LINE L2 2926 3091 -181 824 251 62 46 chr11 23816526 23816961 -126966592 - MER69 DNA AcHobo -3 2523 2082 2085 139 33 41 chr11 23817011 23817378 -126966175 - THE1B LTR MaLR 0 364 1 227 317 0 12 chr11 23817781 23817863 -126965690 - MER69 DNA AcHobo -2445 81 1 2112 119 3 7 chr11 23818945 23819248 -126964305 + AluSq SINE Alu 1 302 -11 2374 146 3 3 chr11 23819642 23820005 -126963548 - THE1B LTR MaLR -1 363 1 1657 74 0 31 chr11 23820010 23820239 -126963314 - THE1B-int LTR MaLR -5 1575 1354 287 125 0 18 chr11 23820240 23820296 -126963257 - MLT2A2 LTR ERVL 0 453 399 305 123 0 18 chr11 23820296 23820353 -126963200 + (CATA)n Simple_repeat Simple_repeat 1 56 0 475 146 11 0 chr11 23820373 23820462 -126963091 - HERVL LTR ERVL -69 5585 5496 220 211 28 0 chr11 23820462 23820533 -126963020 + (TA)n Simple_repeat Simple_repeat 2 74 0 617 121 0 52 chr11 23820573 23820746 -126962807 + (TA)n Simple_repeat Simple_repeat 2 165 0 2913 100 25 0 chr11 23820750 23821149 -126962404 - MLT2A2 LTR ERVL -44 409 1 3025 81 21 9 chr11 23821180 23821615 -126961938 - HERVL-A2 LTR ERVL 0 5654 5215 1582 128 104 35 chr11 23821645 23821934 -126961619 - THE1B LTR MaLR -55 309 1 8583 128 40 8 chr11 23821934 23823249 -126960304 - THE1B-int LTR MaLR -223 1357 1 2373 123 19 6 chr11 23823249 23823608 -126959945 - THE1B LTR MaLR 0 364 1 349 257 248 63 chr11 23824108 23824314 -126959239 - MIR SINE MIR -12 250 7 2148 229 68 31 chr11 23825119 23825769 -126957784 - MER67C LTR ERV1 0 710 37 292 258 0 16 chr11 23826114 23826176 -126957377 - LTR16A LTR ERVL -285 165 105 638 175 39 71 chr11 23826670 23826824 -126956729 + LTR34 LTR ERV1 3 151 -548 1758 179 57 30 chr11 23826824 23827273 -126956280 - LTR10B LTR ERV1 0 547 1 4799 235 5 14 chr11 23827273 23828326 -126955227 - LTR10B-int LTR ERV1 0 6649 5607 652 241 25 42 chr11 23828862 23829103 -126954450 + HAL1 LINE L1 1273 1509 -998 2327 261 88 37 chr11 23829250 23830267 -126953286 + Cheshire DNA MER1_type 4 1071 -1349 399 215 13 0 chr11 23830247 23830326 -126953227 + Cheshire DNA MER1_type 1270 1349 -1071 * 1914 234 35 26 chr11 23830394 23830789 -126952764 + Cheshire DNA MER1_type 1660 2063 -357 2286 72 24 3 chr11 23830789 23831082 -126952471 - AluY SINE Alu -12 299 1 1914 234 35 26 chr11 23831082 23831233 -126952320 + Cheshire DNA MER1_type 2063 2211 -209 2771 104 22 7 chr11 23831234 23831647 -126951906 - L1PA13 LINE L1 -2 6161 5743 15612 198 15 3 chr11 23831747 23834957 -126948596 - L1P LINE L1 -927 5219 1972 516 272 7 7 chr11 23835061 23835197 -126948356 - HERVI LTR ERV1 -3527 4258 4123 201 98 24 24 chr11 23835230 23835271 -126948282 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 6621 221 70 67 chr11 23835274 23839024 -126944529 - HERVI LTR ERV1 -3673 4112 5 1853 182 53 30 chr11 23839024 23839475 -126944078 - LTR10B LTR ERV1 0 547 1 * 2717 156 72 13 chr11 23839475 23839996 -126943557 + LTR34 LTR ERV1 148 699 0 409 300 118 68 chr11 23840309 23840529 -126943024 + MER115 DNA AcHobo 11 241 -452 24 0 0 0 chr11 23840543 23840567 -126942986 + AT_rich Low_complexity Low_complexity 1 24 0 3609 165 36 29 chr11 23840823 23841545 -126942008 + LTR8A LTR ERV1 1 727 0 340 215 0 0 chr11 23841574 23841639 -126941914 + L1PA15-16 LINE L1 2830 2894 -3955 2077 153 11 25 chr11 23841639 23841999 -126941554 - THE1A LTR MaLR 0 355 1 7079 117 20 2 chr11 23841999 23843004 -126940549 - THE1A-int LTR MaLR 0 1580 558 1430 240 2 16 chr11 23843003 23843440 -126940113 + L1P LINE L1 4906 5336 -810 * 4176 184 23 15 chr11 23843592 23844452 -126939101 + L1 LINE L1 3534 4400 -1746 474 250 50 0 chr11 23844709 23844829 -126938724 + MER94 DNA DNA 8 133 -1 590 304 62 18 chr11 23845004 23845231 -126938322 - MIR SINE MIR -25 237 1 23 0 0 0 chr11 23846024 23846047 -126937506 + AT_rich Low_complexity Low_complexity 1 23 0 218 215 0 15 chr11 23846909 23846974 -126936579 + (TATG)n Simple_repeat Simple_repeat 2 65 0 292 172 29 3 chr11 23847225 23847293 -126936260 + L1MB8 LINE L1 5894 5965 -199 216 246 29 0 chr11 23847603 23847679 -126935874 + (TA)n Simple_repeat Simple_repeat 1 78 0 2337 81 0 3 chr11 23847788 23848095 -126935458 + AluY SINE Alu 1 306 -5 2345 177 36 27 chr11 23848245 23848828 -126934725 - L1MB8 LINE L1 -1 6177 5590 225 0 0 0 chr11 23848846 23848871 -126934682 + (TG)n Simple_repeat Simple_repeat 2 26 0 315 0 0 0 chr11 23848884 23848919 -126934634 + (TA)n Simple_repeat Simple_repeat 2 36 0 330 297 20 20 chr11 23849365 23849466 -126934087 - MER5A DNA MER1_type -50 139 39 238 333 53 9 chr11 23849366 23849480 -126934073 + MER5A DNA MER1_type 61 179 -10 * 815 82 11 1 chr11 23849811 23849937 -126933616 + L1MA1 LINE L1 5724 5859 -296 1511 194 28 0 chr11 23849937 23850220 -126933333 - AluJo SINE Alu -21 291 1 959 198 11 0 chr11 23850222 23850404 -126933149 + Tigger3(Golem) DNA MER2_type 2833 3016 -13 889 147 16 16 chr11 23850404 23850594 -126932959 + L1MA8 LINE L1 6098 6287 -4 1802 135 40 3 chr11 23851038 23851334 -126932219 + AluSq SINE Alu 1 307 -6 1989 140 31 0 chr11 23852259 23852551 -126931002 + AluSx SINE Alu 1 301 -11 212 200 60 0 chr11 23853943 23853993 -126929560 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 1772 239 109 0 chr11 23854117 23854557 -126928996 - MLT1E2 LTR MaLR -2 624 137 6168 185 15 27 chr11 23854603 23856384 -126927169 - L1PA16 LINE L1 -9 6157 4414 216 0 0 0 chr11 23856384 23856408 -126927145 + (TG)n Simple_repeat Simple_repeat 1 24 0 6168 185 15 27 chr11 23856408 23856955 -126926598 - L1PA16 LINE L1 -1752 4414 3862 221 188 40 50 chr11 23857747 23857848 -126925705 + A-rich Low_complexity Low_complexity 2 101 0 32 57 0 0 chr11 23857797 23857850 -126925703 + AT_rich Low_complexity Low_complexity 1 53 0 * 4750 148 33 22 chr11 23858176 23858993 -126924560 - LTR1B LTR ERV1 0 826 1 597 218 43 41 chr11 23858993 23859177 -126924376 - MIR SINE MIR -22 240 57 324 296 107 6 chr11 23859872 23860031 -126923522 - MIR SINE MIR -64 198 24 39933 41 22 2 chr11 23860052 23866072 -126917481 + L1PA3 LINE L1 5 6150 -5 304 333 63 0 chr11 23866322 23866448 -126917105 - L2 LINE L2 -223 3049 2916 186 43 0 0 chr11 23866934 23866957 -126916596 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 726 271 26 0 chr11 23867296 23867488 -126916065 - MIR SINE MIR -6 256 60 230 322 13 54 chr11 23867589 23867738 -126915815 - L2 LINE L2 -15 3298 3156 597 174 7 58 chr11 23867840 23867995 -126915558 - LTR37A LTR ERV1 -231 195 49 1261 322 56 29 chr11 23868036 23868661 -126914892 + L2 LINE L2 2218 2859 -455 23 0 0 0 chr11 23869390 23869413 -126914140 + AT_rich Low_complexity Low_complexity 1 23 0 341 65 0 0 chr11 23869562 23869608 -126913945 - MADE1 DNA Mariner 0 80 35 277 130 0 0 chr11 23869834 23869880 -126913673 + MADE1 DNA Mariner 35 80 0 256 213 0 0 chr11 23870586 23870647 -126912906 + LTR58 LTR ERV1 350 410 -269 304 311 15 15 chr11 23871894 23872110 -126911443 + HERV17 LTR ERV1 526 1633 -5043 555 326 59 53 chr11 23873742 23874355 -126909198 + HERV17 LTR ERV1 2702 3323 -3799 2033 128 34 0 chr11 23874355 23874651 -126908902 - AluSx SINE Alu -6 306 1 555 326 59 53 chr11 23874651 23874938 -126908615 + HERV17 LTR ERV1 3323 3607 -3515 258 301 40 40 chr11 23875224 23875473 -126908080 + HERV17 LTR ERV1 4588 4836 -2920 455 326 37 40 chr11 23876026 23876490 -126907063 + HERV17 LTR ERV1 5384 6422 -1910 2387 186 15 9 chr11 23878000 23878458 -126905095 + LTR32 LTR ERVL 11 471 0 195 171 9 45 chr11 23879037 23879148 -126904405 + (TA)n Simple_repeat Simple_repeat 2 108 0 1683 189 9 0 chr11 23880347 23880664 -126902889 + L1MC1 LINE L1 6012 6331 -2 754 171 0 29 chr11 23880699 23880839 -126902714 + Tigger1 DNA MER2_type 1 136 -2282 798 189 18 77 chr11 23880847 23881069 -126902484 + Tigger1 DNA MER2_type 2210 2418 0 526 294 32 18 chr11 23881931 23882127 -126901426 + MIR SINE MIR 3 198 -64 700 197 67 59 chr11 23882130 23882275 -126901278 + MER33 DNA MER1_type 1 150 -2435 2368 77 3 0 chr11 23882275 23882574 -126900979 + AluY SINE Alu 2 301 -10 700 197 67 59 chr11 23882574 23882682 -126900871 + MER33 DNA MER1_type 150 256 -68 395 329 7 7 chr11 23882840 23882980 -126900573 - MIR SINE MIR -12 250 111 372 211 102 47 chr11 23883233 23883361 -126900192 + MIR SINE MIR 21 155 -107 7659 25 5 0 chr11 23883815 23885499 -126898054 - L1PA3 LINE L1 -3 6152 4464 12724 37 0 2 chr11 23885501 23887144 -126896409 + L1PA3 LINE L1 2827 4465 -1681 21 0 0 0 chr11 23887495 23887516 -126896037 + AT_rich Low_complexity Low_complexity 1 21 0 395 281 23 58 chr11 23888376 23888547 -126895006 - MER115 DNA AcHobo -112 581 417 3605 173 15 24 chr11 23888555 23889069 -126894484 - L1PA16 LINE L1 -159 6007 5502 2421 80 0 0 chr11 23889069 23889368 -126894185 - AluY SINE Alu -12 299 1 3605 173 15 24 chr11 23889368 23889677 -126893876 - L1PA16 LINE L1 -664 5502 5192 1321 158 0 5 chr11 23939677 23939880 -126843673 + AluSg/x SINE Alu 75 276 -36 279 0 0 0 chr11 23939885 23939916 -126843637 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 635 246 29 79 chr11 23939916 23940156 -126843397 + L1MB8 LINE L1 1551 1778 -4606 643 271 86 37 chr11 23940310 23941115 -126842438 + L1MB8 LINE L1 1826 2615 -3767 * 2378 291 43 47 chr11 23941101 23941847 -126841706 + L1MB8 LINE L1 5672 6414 0 349 198 81 0 chr11 23941850 23941936 -126841617 - MER53 DNA DNA -1 188 96 307 178 9 122 chr11 23941969 23942076 -126841477 + MER53 DNA DNA 95 189 0 2794 92 76 35 chr11 23942384 23942603 -126840950 + MLT2A2 LTR ERVL 1 209 -244 4914 64 17 0 chr11 23942603 23943274 -126840279 + L1PA8 LINE L1 5512 6193 0 2794 92 76 35 chr11 23943274 23943450 -126840103 + MLT2A2 LTR ERVL 209 420 -33 369 0 0 0 chr11 23943450 23943491 -126840062 + (TA)n Simple_repeat Simple_repeat 2 42 0 2794 92 76 35 chr11 23943491 23943527 -126840026 + MLT2A2 LTR ERVL 420 453 0 268 291 0 38 chr11 23943951 23944030 -126839523 - MARNA DNA Mariner -416 170 95 192 364 124 23 chr11 23944133 23944262 -126839291 - L2 LINE L2 -15 3257 3116 643 266 54 5 chr11 23944809 23944993 -126838560 + MLT1F1 LTR MaLR 351 543 -24 646 219 55 125 chr11 23945012 23945323 -126838230 - MLT1A1 LTR MaLR -75 290 2 1904 151 66 26 chr11 23945469 23945819 -126837734 + THE1B LTR MaLR 1 364 0 577 241 85 11 chr11 23945895 23946165 -126837388 + L1MB8 LINE L1 5010 5299 -847 344 321 54 33 chr11 23946334 23946518 -126837035 + MLT1J2 LTR MaLR 263 450 0 529 305 44 0 chr11 23947024 23947227 -126836326 - MIR SINE MIR -10 252 41 252 336 55 16 chr11 23948889 23949017 -126834536 + MIR SINE MIR 57 189 -73 21 0 0 0 chr11 23949068 23949089 -126834464 + AT_rich Low_complexity Low_complexity 1 21 0 530 263 114 31 chr11 23949271 23949499 -126834054 - MIR SINE MIR -1 261 15 189 107 0 0 chr11 23950167 23950195 -126833358 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 278 391 45 11 chr11 23950521 23950700 -126832853 - MIR SINE MIR -76 186 2 2527 104 8 8 chr11 23951115 23951489 -126832064 - THE1C LTR MaLR -1 374 1 1565 235 33 9 chr11 23951980 23952410 -126831143 + L1MB8 LINE L1 5692 6131 -47 180 0 0 0 chr11 23952912 23952932 -126830621 + (T)n Simple_repeat Simple_repeat 1 20 0 395 316 8 17 chr11 23953286 23953403 -126830150 - L2 LINE L2 -13 3300 3185 1467 299 169 15 chr11 23953562 23954438 -126829115 - L2 LINE L2 -33 3280 2243 2042 130 3 3 chr11 23954456 23954756 -126828797 + AluSx SINE Alu 2 301 -11 901 270 51 52 chr11 23954761 23955344 -126828209 - L2 LINE L2 -158 3155 2518 14783 27 1 1 chr11 23955437 23957967 -126825586 - L1PA3 LINE L1 0 6155 3627 180 304 62 54 chr11 23958576 23958688 -126824865 - L2 LINE L2 -1 3312 3200 232 324 103 55 chr11 23958713 23958858 -126824695 + L2 LINE L2 2581 2732 -582 479 328 30 10 chr11 23958881 23959079 -126824474 - MLT1K LTR MaLR -23 565 364 183 129 0 0 chr11 23960298 23960329 -126823224 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 5217 169 42 8 chr11 23960899 23961951 -126821602 + Tigger3b DNA MER2_type 3 1090 -141 315 50 0 0 chr11 23961989 23962029 -126821524 - AluY SINE Alu -196 105 66 40993 33 21 3 chr11 23962048 23968084 -126815469 - L1PA2 LINE L1 0 6155 3 689 226 0 0 chr11 23968100 23968237 -126815316 + Tigger3b DNA MER2_type 1096 1232 0 303 28 0 0 chr11 23968240 23968276 -126815277 + (CA)n Simple_repeat Simple_repeat 2 37 0 349 224 112 15 chr11 23968324 23968458 -126815095 + MLT1J2 LTR MaLR 70 216 -234 3288 200 23 7 chr11 23968581 23969281 -126814272 - MER50 LTR ERV1 -23 711 1 425 324 51 5 chr11 23969569 23969767 -126813786 - MIR SINE MIR -17 245 34 661 332 80 43 chr11 23970106 23970666 -126812887 + L2 LINE L2 2730 3313 0 2443 80 23 0 chr11 23970706 23971007 -126812546 + AluSq SINE Alu 1 308 -5 358 323 89 6 chr11 23971027 23971185 -126812368 + MIR SINE MIR 5 175 -87 1071 270 0 0 chr11 23972094 23972353 -126811200 + MER77 LTR ERV1 344 602 -3 328 245 0 13 chr11 23972468 23972619 -126810934 + (TG)n Simple_repeat Simple_repeat 1 149 0 324 303 69 41 chr11 23972630 23972828 -126810725 - L2 LINE L2 -307 2965 2761 303 246 73 36 chr11 23972874 23972984 -126810569 + L1ME LINE L1 5727 5840 -281 294 164 0 0 chr11 23973073 23973128 -126810425 + (TA)n Simple_repeat Simple_repeat 2 56 0 27 49 0 0 chr11 23973288 23973329 -126810224 + AT_rich Low_complexity Low_complexity 1 41 0 362 319 186 49 chr11 23973429 23973912 -126809641 - L2 LINE L2 -782 2532 2116 2126 57 0 8 chr11 23973912 23974175 -126809378 - AluY SINE Alu -10 301 41 362 319 186 49 chr11 23974175 23974482 -126809071 - L2 LINE L2 -1198 2116 1634 659 229 0 0 chr11 23975092 23975214 -126808339 - AluSg/x SINE Alu -27 283 162 1709 179 6 22 chr11 23975249 23975561 -126807992 - AluJb SINE Alu -5 307 1 24 32 0 0 chr11 23975570 23975601 -126807952 + AT_rich Low_complexity Low_complexity 1 31 0 199 377 29 43 chr11 23975959 23976097 -126807456 - MIR SINE MIR -112 150 15 180 361 33 16 chr11 23976265 23976326 -126807227 + L3b LINE CR1 1504 1565 -18 1574 232 183 35 chr11 23976876 23977257 -126806296 - MLT1E1 LTR MaLR 0 654 331 1498 138 30 0 chr11 23977257 23977525 -126806028 - L1MA4 LINE L1 -5 6295 6020 1574 232 183 35 chr11 23977525 23977713 -126805840 - MLT1E1 LTR MaLR -323 331 1 320 209 91 0 chr11 23979118 23979228 -126804325 - Charlie5 DNA MER1_type -27 2585 2466 1005 195 0 15 chr11 23979534 23979739 -126803814 + BaEV-int LTR ERV1 5290 5491 -1158 22 56 0 0 chr11 23980199 23980235 -126803318 + AT_rich Low_complexity Low_complexity 1 36 0 10444 24 1 1 chr11 23980236 23981519 -126802034 - L1P LINE L1 -1168 4978 3696 332 287 0 21 chr11 23982247 23982341 -126801212 - MLT1E2 LTR MaLR -92 532 441 713 285 61 26 chr11 23982540 23982861 -126800692 - MLT1E2 LTR MaLR -174 452 184 745 208 0 0 chr11 23982861 23982991 -126800562 + FLAM_A SINE Alu 1 130 -12 417 239 190 6 chr11 23983000 23983163 -126800390 - MLT1E2 LTR MaLR -460 194 2 3785 148 21 28 chr11 23983764 23984480 -126799073 + MER50 LTR ERV1 1 711 -23 23 0 0 0 chr11 23984673 23984696 -126798857 + AT_rich Low_complexity Low_complexity 1 23 0 38540 71 4 5 chr11 23984884 23991025 -126792528 + L1PA5 LINE L1 11 6148 -6 30 0 0 0 chr11 23991166 23991196 -126792357 + AT_rich Low_complexity Low_complexity 1 30 0 799 219 185 24 chr11 23991227 23991524 -126792029 + L1MD2 LINE L1 6005 6349 -10 440 165 0 47 chr11 23991532 23991617 -126791936 - FRAM SINE Alu -22 154 74 1665 74 4 4 chr11 23991717 23991946 -126791607 - L1PA6 LINE L1 -21 6133 5905 2352 160 10 0 chr11 23992445 23992844 -126790709 - MER57A LTR ERV1 0 403 1 421 265 23 15 chr11 23993515 23993647 -126789906 + LTR68 LTR ERV1 302 434 -306 531 172 0 0 chr11 23993703 23993796 -126789757 - L1MC/D LINE L1 -723 5636 5544 485 325 164 3 chr11 23993806 23994160 -126789393 + MER69 DNA AcHobo 136 546 -680 999 223 78 35 chr11 23994192 23994681 -126788872 + MER69 DNA AcHobo 2017 2526 0 3383 58 4 13 chr11 23994927 23995379 -126788174 - LTR7 LTR ERV1 -2 448 1 2327 82 48 13 chr11 23995379 23995756 -126787797 - HERVH LTR ERV1 0 7713 7324 1210 148 18 5 chr11 23995756 23995973 -126787580 - HERVH LTR ERV1 -1894 5819 5600 3936 145 21 3 chr11 23995974 23996624 -126786929 - HERVH LTR ERV1 -2564 5149 4488 3166 110 6 6 chr11 23996626 23997128 -126786425 - HERVH LTR ERV1 -3720 3993 3492 875 128 20 0 chr11 23997118 23997266 -126786287 - HERVH LTR ERV1 -4423 3290 3140 * 18492 104 19 12 chr11 23997245 24000221 -126783332 - HERVH LTR ERV1 -4718 2995 1 3399 58 4 13 chr11 24000223 24000675 -126782878 - LTR7 LTR ERV1 -2 448 1 283 307 57 0 chr11 24001378 24001466 -126782087 - L2 LINE L2 0 3272 3180 569 311 129 15 chr11 24002169 24002433 -126781120 + L2 LINE L2 1382 1675 -1639 222 191 0 0 chr11 24002863 24002910 -126780643 + (TG)n Simple_repeat Simple_repeat 2 48 0 238 191 17 104 chr11 24002958 24003073 -126780480 + L1ME4a LINE L1 5964 6068 -53 361 326 125 8 chr11 24003182 24003526 -126780027 + MLT1F LTR MaLR 1 346 -196 603 339 39 9 chr11 24003603 24003836 -126779717 + MIR SINE MIR 2 241 -21 213 39 0 0 chr11 24004420 24004446 -126779107 + (T)n Simple_repeat Simple_repeat 1 26 0 7755 20 0 2 chr11 24004471 24005785 -126777768 - L1PA3 LINE L1 -1 6154 4842 387 0 0 0 chr11 24006335 24006378 -126777175 + (CA)n Simple_repeat Simple_repeat 1 43 0 275 116 58 14 chr11 24006512 24006581 -126776972 - MER116 DNA Mariner -3 77 6 21 36 0 0 chr11 24007689 24007717 -126775836 + AT_rich Low_complexity Low_complexity 1 28 0 506 197 68 83 chr11 24008267 24008531 -126775022 - LTR37B LTR ERV1 -55 413 154 289 292 0 0 chr11 24008674 24008739 -126774814 + L2 LINE L2 3235 3299 -14 210 71 0 0 chr11 24008743 24008771 -126774782 + (TGGA)n Simple_repeat Simple_repeat 4 31 0 2182 156 5 24 chr11 24008861 24009232 -126774321 - THE1B LTR MaLR 0 364 1 11198 101 15 9 chr11 24009232 24010802 -126772751 - THE1B-int LTR MaLR 0 1580 1 610 138 0 0 chr11 24010822 24010909 -126772644 - THE1B LTR MaLR -277 87 1 682 181 15 0 chr11 24011096 24011229 -126772324 - L1MA9 LINE L1 -145 6167 6033 811 209 25 0 chr11 24011319 24011477 -126772076 + FAM SINE Alu 1 162 -13 288 319 60 17 chr11 24011704 24011820 -126771733 + L2 LINE L2 3187 3307 -6 237 265 15 15 chr11 24012771 24012839 -126770714 - L2 LINE L2 -84 3229 3162 4082 182 107 163 chr11 24012948 24014808 -126768745 + MER52A LTR ERV1 1 1754 -1 265 190 266 38 chr11 24014904 24014983 -126768570 + FRAM SINE Alu 1 91 -75 28 48 0 0 chr11 24017275 24017317 -126766236 + AT_rich Low_complexity Low_complexity 1 42 0 231 125 0 0 chr11 24017679 24017719 -126765834 + (TG)n Simple_repeat Simple_repeat 2 41 0 185 197 16 0 chr11 24018868 24018929 -126764624 + (TA)n Simple_repeat Simple_repeat 2 63 0 3164 158 8 8 chr11 24019383 24019910 -126763643 - MER1A DNA MER1_type 0 527 1 312 301 58 29 chr11 24020067 24020240 -126763313 + MIR SINE MIR 58 235 -27 779 148 59 0 chr11 24021279 24021414 -126762139 - L1MA7 LINE L1 -365 5926 5784 333 193 0 24 chr11 24021414 24021480 -126762073 + L1MA7 LINE L1 6209 6289 -2 260 309 121 34 chr11 24021627 24021892 -126761661 + L1MCc LINE L1 112 399 -6024 973 243 57 7 chr11 24021942 24022222 -126761331 - MER58B DNA MER1_type -42 299 6 1403 245 107 55 chr11 24022288 24022830 -126760723 - MLT1E2 LTR MaLR -5 621 52 189 276 52 17 chr11 24023604 24023662 -126759891 + MIR SINE MIR 82 141 -67 1462 91 0 0 chr11 24024215 24024413 -126759140 + AluY SINE Alu 51 248 -63 223 258 0 15 chr11 24025112 24025178 -126758375 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 2311 253 61 39 chr11 24025822 24026040 -126757513 + L1ME2 LINE L1 4524 4736 -1428 1576 163 0 8 chr11 24026040 24026298 -126757255 + AluJb SINE Alu 1 256 -56 2311 253 61 39 chr11 24026298 24027666 -126755887 + L1ME2 LINE L1 4736 6145 -19 20285 52 12 2 chr11 24028418 24031781 -126751772 + L1PA5 LINE L1 2780 6152 -2 25 0 0 0 chr11 24032754 24032779 -126750774 + AT_rich Low_complexity Low_complexity 1 25 0 344 275 55 77 chr11 24033283 24033465 -126750088 - MIR SINE MIR -64 198 21 1802 153 7 7 chr11 24033794 24034075 -126749478 - AluJb SINE Alu -31 281 1 323 331 97 26 chr11 24034718 24034872 -126748681 - L2 LINE L2 -1 3271 3107 441 147 13 0 chr11 24035582 24035657 -126747896 - MER4D LTR ERV1 0 903 828 1612 186 3 59 chr11 24035906 24036260 -126747293 - MER4E LTR ERV1 -79 700 367 23 0 0 0 chr11 24036307 24036330 -126747223 + AT_rich Low_complexity Low_complexity 1 23 0 473 229 0 0 chr11 24036984 24037067 -126746486 + MER2 DNA MER2_type 2 84 -261 * 590 145 23 100 chr11 24037061 24037261 -126746292 - MER67C LTR ERV1 -357 157 72 389 279 115 44 chr11 24037384 24037657 -126745896 + MLT1H LTR MaLR 189 547 -2 1143 230 111 47 chr11 24037961 24038499 -126745054 + LTR24B LTR ERV1 12 569 -7 220 200 20 0 chr11 24039834 24039884 -126743669 + (CA)n Simple_repeat Simple_repeat 1 51 0 291 299 79 85 chr11 24039953 24040130 -126743423 + MIR SINE MIR 71 246 -16 345 356 82 0 chr11 24040191 24040337 -126743216 - L2 LINE L2 0 3272 3115 214 279 73 44 chr11 24041141 24041209 -126742344 - MIR SINE MIR -171 91 22 897 203 61 20 chr11 24041487 24041733 -126741820 - LTR48B LTR ERV1 -5 639 384 1191 206 56 12 chr11 24041953 24042205 -126741348 - LTR48B LTR ERV1 -379 265 3 424 215 21 21 chr11 24042215 24042308 -126741245 + MIR SINE MIR 119 211 -51 2269 145 43 43 chr11 24042360 24042780 -126740773 + LTR49 LTR ERV1 7 426 -169 3166 183 45 16 chr11 24042780 24043407 -126740146 - MER39B LTR ERV1 0 653 9 650 183 38 12 chr11 24043406 24043583 -126739970 + LTR49 LTR ERV1 473 593 -2 * 3198 241 58 28 chr11 24043589 24045139 -126738414 - L1MC/D LINE L1 -693 5926 4336 664 254 35 45 chr11 24045164 24045365 -126738188 - MLT1D LTR MaLR -302 203 5 1151 234 51 56 chr11 24045380 24045701 -126737852 - L1MDa LINE L1 -3654 2752 2431 408 88 0 0 chr11 24045701 24045758 -126737795 + (TG)n Simple_repeat Simple_repeat 2 58 0 1151 234 51 56 chr11 24045758 24046128 -126737425 - L1MDa LINE L1 -3975 2431 2094 268 286 50 8 chr11 24046191 24046310 -126737243 + L1MDa LINE L1 2042 2165 -4375 296 219 73 0 chr11 24046324 24046406 -126737147 - L1MDa LINE L1 -4530 1876 1789 * 323 314 36 22 chr11 24046388 24046525 -126737028 - L1MDa LINE L1 -5923 486 348 718 290 40 28 chr11 24046565 24046817 -126736736 - L1MDa LINE L1 -6147 262 8 204 40 0 0 chr11 24046873 24046898 -126736655 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr11 24047617 24047639 -126735914 + AT_rich Low_complexity Low_complexity 1 22 0 1983 127 14 3 chr11 24048821 24049105 -126734448 - AluJb SINE Alu -25 287 1 204 125 0 0 chr11 24049271 24049303 -126734250 + (TC)n Simple_repeat Simple_repeat 1 32 0 270 0 0 0 chr11 24049303 24049333 -126734220 + (TG)n Simple_repeat Simple_repeat 1 30 0 22 35 0 0 chr11 24049384 24049413 -126734140 + AT_rich Low_complexity Low_complexity 1 29 0 1174 236 30 43 chr11 24049694 24050062 -126733491 - MLT1A1 LTR MaLR -2 363 1 36 40 0 0 chr11 24050434 24050484 -126733069 + AT_rich Low_complexity Low_complexity 1 50 0 1752 176 3 0 chr11 24050503 24050792 -126732761 - AluSx SINE Alu -22 290 1 1224 224 82 45 chr11 24051313 24051693 -126731860 - MSTD LTR MaLR 0 396 3 858 301 37 71 chr11 24053162 24053375 -126730178 - MER115 DNA AcHobo 0 693 501 1975 125 20 10 chr11 24053375 24053670 -126729883 + AluSg SINE Alu 1 298 -12 858 301 37 71 chr11 24053670 24053892 -126729661 - MER115 DNA AcHobo -192 501 273 837 250 26 44 chr11 24054116 24054344 -126729209 + MIR SINE MIR 34 257 -5 241 185 19 19 chr11 24056080 24056134 -126727419 + CT-rich Low_complexity Low_complexity 1 54 0 21 36 0 0 chr11 24056139 24056167 -126727386 + AT_rich Low_complexity Low_complexity 1 28 0 497 322 53 33 chr11 24056502 24056747 -126726806 - MLT1J2 LTR MaLR -145 305 56 2263 152 28 30 chr11 24056958 24057385 -126726168 - MSTB LTR MaLR 0 426 1 292 346 75 9 chr11 24057787 24057894 -126725659 + MER91A DNA MER1_type 45 158 -38 243 375 11 0 chr11 24058092 24058180 -126725373 + MIR3 SINE MIR 113 201 -7 2355 155 18 56 chr11 24058288 24058803 -126724750 - L1MA4 LINE L1 -6 6294 5800 811 175 0 22 chr11 24058857 24058994 -126724559 + FRAM SINE Alu 16 149 -27 8821 205 30 12 chr11 24059004 24059671 -126723882 - L1MA4 LINE L1 -1289 4857 4203 237 65 0 0 chr11 24059671 24059702 -126723851 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 8821 205 30 12 chr11 24059702 24060719 -126722834 - L1MA4 LINE L1 -1943 4203 3127 2474 45 13 10 chr11 24060719 24061027 -126722526 - AluY SINE Alu -2 309 1 8821 205 30 12 chr11 24061027 24061398 -126722155 - L1MA4 LINE L1 -3019 3127 2764 22 94 0 0 chr11 24061475 24061539 -126722014 + AT_rich Low_complexity Low_complexity 1 64 0 2073 142 3 0 chr11 24061740 24062050 -126721503 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr11 24062411 24062433 -126721120 + AT_rich Low_complexity Low_complexity 1 22 0 413 205 36 0 chr11 24062680 24062792 -126720761 + L1MA7 LINE L1 6174 6289 -2 26 74 0 0 chr11 24062793 24062847 -126720706 + AT_rich Low_complexity Low_complexity 1 54 0 529 355 14 5 chr11 24063052 24063272 -126720281 + MIR SINE MIR 31 252 -10 183 324 102 19 chr11 24063309 24063417 -126720136 - L2 LINE L2 -33 3280 3164 301 234 130 0 chr11 24063989 24064066 -126719487 - HERV16 LTR ERVL -4287 709 623 24 0 0 0 chr11 24064397 24064421 -126719132 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr11 24064674 24064722 -126718831 + AT_rich Low_complexity Low_complexity 1 48 0 197 205 0 26 chr11 24065318 24065357 -126718196 - L2 LINE L2 -15 3298 3261 726 205 12 6 chr11 24065402 24065568 -126717985 + L1MA4 LINE L1 4238 4404 -1742 678 101 0 0 chr11 24065574 24065683 -126717870 - L1P LINE L1 -3680 2466 2358 * 5154 167 12 14 chr11 24065679 24066681 -126716872 + L1MA4 LINE L1 5295 6300 0 5006 242 26 14 chr11 24066859 24068296 -126715257 - L1 LINE L1 -2261 3885 2431 765 220 57 0 chr11 24068291 24068450 -126715103 + L1MA9 LINE L1 5914 6081 -231 * 406 186 13 1 chr11 24068455 24068553 -126715000 + L1MA9 LINE L1 6183 6290 -9 271 307 72 48 chr11 24068599 24068765 -126714788 - MIR SINE MIR -46 216 47 325 151 118 32 chr11 24068889 24068982 -126714571 - MIR SINE MIR -65 197 97 318 253 127 40 chr11 24069092 24069242 -126714311 + MLT1C LTR MaLR 66 228 -239 421 296 37 7 chr11 24069243 24069378 -126714175 + MIR SINE MIR 17 155 -107 1008 192 0 13 chr11 24070029 24070263 -126713290 + L1MA4 LINE L1 6069 6299 -1 7344 40 0 0 chr11 24070317 24071382 -126712171 - L1PA5 LINE L1 0 6154 5089 8616 34 0 0 chr11 24071382 24072412 -126711141 + L1PA5 LINE L1 4071 5100 -1046 984 363 76 32 chr11 24072808 24073060 -126710493 - MER115 DNA AcHobo -1 692 453 2219 118 0 6 chr11 24073060 24073373 -126710180 - AluY SINE Alu 0 311 1 984 363 76 32 chr11 24073373 24073748 -126709805 - MER115 DNA AcHobo -240 453 37 23 0 0 0 chr11 24074443 24074466 -126709087 + AT_rich Low_complexity Low_complexity 1 23 0 5264 82 54 5 chr11 24075142 24075886 -126707667 - LTR17 LTR ERV1 0 780 1 21 36 0 0 chr11 24075920 24075948 -126707605 + AT_rich Low_complexity Low_complexity 1 28 0 426 329 41 0 chr11 24076120 24076266 -126707287 + MIR SINE MIR 111 262 0 515 246 108 11 chr11 24078321 24078581 -126704972 + MER69 DNA AcHobo 2090 2374 -152 26 50 0 0 chr11 24078581 24078621 -126704932 + AT_rich Low_complexity Low_complexity 1 40 0 70 48 0 0 chr11 24078656 24078761 -126704792 + AT_rich Low_complexity Low_complexity 1 105 0 332 211 32 21 chr11 24078771 24078866 -126704687 + MER69 DNA AcHobo 2414 2509 -17 328 265 125 52 chr11 24079050 24079186 -126704367 - MIR SINE MIR -83 179 34 22 0 0 0 chr11 24079411 24079433 -126704120 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 24079508 24079536 -126704017 + AT_rich Low_complexity Low_complexity 1 28 0 394 267 42 0 chr11 24079563 24079728 -126703825 + L1M4 LINE L1 2814 2985 -3161 3138 251 43 13 chr11 24079743 24080844 -126702709 + L1M4 LINE L1 2446 3579 -2567 1863 144 29 16 chr11 24080844 24081150 -126702403 + AluSx SINE Alu 1 310 -2 36 87 0 0 chr11 24081460 24081552 -126702001 + AT_rich Low_complexity Low_complexity 1 92 0 232 338 58 45 chr11 24081723 24081877 -126701676 - L2 LINE L2 -1 3271 3116 344 242 0 22 chr11 24081989 24082080 -126701473 - MER117 DNA MER1_type -102 95 7 216 255 0 0 chr11 24082942 24082993 -126700560 + L2 LINE L2 3263 3313 0 376 290 16 75 chr11 24083157 24083343 -126700210 - MER5B DNA MER1_type 0 178 4 207 69 0 0 chr11 24084332 24084361 -126699192 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2168 96 0 3 chr11 24084443 24084767 -126698786 + AluSx SINE Alu 1 323 0 242 294 59 39 chr11 24084992 24085094 -126698459 - MLT2E LTR ERVL -490 138 35 1600 206 18 97 chr11 24085419 24085924 -126697629 - MLT1C LTR MaLR -2 465 1 23 86 0 0 chr11 24086633 24086691 -126696862 + AT_rich Low_complexity Low_complexity 1 58 0 199 324 14 0 chr11 24086991 24087062 -126696491 - MIR SINE MIR -2 260 189 203 263 70 0 chr11 24087090 24087147 -126696406 + MIR SINE MIR 81 141 -67 268 286 205 18 chr11 24087809 24087921 -126695632 - MIR SINE MIR -112 150 18 235 321 9 0 chr11 24088071 24088183 -126695370 + (TA)n Simple_repeat Simple_repeat 2 114 0 304 278 10 31 chr11 24088300 24088397 -126695156 + MIR SINE MIR 161 255 -7 21 0 0 0 chr11 24089445 24089466 -126694087 + AT_rich Low_complexity Low_complexity 1 21 0 2634 24 0 0 chr11 24089955 24090251 -126693302 + AluY SINE Alu 1 296 -15 2328 102 0 3 chr11 24091852 24092165 -126691388 + AluSx SINE Alu 1 312 0 1902 236 106 25 chr11 24093222 24093778 -126689775 + MLT1E3 LTR MaLR 5 605 -19 201 351 75 0 chr11 24093871 24093965 -126689588 + MIR SINE MIR 106 206 -56 986 293 0 12 chr11 24095666 24095922 -126687631 + HUERS-P1 LTR ERV1 5966 6218 -45 925 193 80 72 chr11 24095945 24096209 -126687344 + LTR8A LTR ERV1 1 266 -461 5767 116 19 9 chr11 24096239 24097411 -126686142 + L1PA14 LINE L1 4975 6161 0 1539 172 94 50 chr11 24097445 24097829 -126685724 + LTR8A LTR ERV1 274 674 -53 23 68 0 0 chr11 24098492 24098536 -126685017 + AT_rich Low_complexity Low_complexity 1 44 0 27 73 0 0 chr11 24098829 24098884 -126684669 + AT_rich Low_complexity Low_complexity 1 55 0 183 42 0 0 chr11 24099196 24099220 -126684333 + (TTGG)n Simple_repeat Simple_repeat 4 27 0 1993 100 6 70 chr11 24099232 24099561 -126683992 - AluSg SINE Alu -2 308 1 587 300 112 9 chr11 24099666 24099899 -126683654 + MIR SINE MIR 6 262 0 399 268 39 78 chr11 24099916 24100274 -126683279 - HAL1 LINE L1 -922 1585 1242 23 68 0 0 chr11 24101544 24101588 -126681965 + AT_rich Low_complexity Low_complexity 1 44 0 30 59 0 0 chr11 24101713 24101764 -126681789 + AT_rich Low_complexity Low_complexity 1 51 0 2602 174 17 14 chr11 24101764 24102282 -126681271 - L1 LINE L1 -1541 4605 4086 * 4477 184 12 14 chr11 24102279 24102939 -126680614 + L1PB4 LINE L1 4641 5301 -855 351 0 0 0 chr11 24102939 24102978 -126680575 + (CA)n Simple_repeat Simple_repeat 2 40 0 4477 184 12 14 chr11 24102978 24103126 -126680427 + L1PB4 LINE L1 5301 5448 -708 2499 146 26 5 chr11 24103126 24103545 -126680008 - MSTA LTR MaLR 0 428 1 4477 184 12 14 chr11 24103545 24104247 -126679306 + L1PB4 LINE L1 5448 6148 -8 4427 231 16 27 chr11 24155530 24156693 -126626860 - L1P LINE L1 -3284 2862 1712 182 62 31 0 chr11 24158809 24158841 -126624712 + (CCCCCT)n Simple_repeat Simple_repeat 1 33 0 191 289 53 0 chr11 24159217 24159293 -126624260 - MIR SINE MIR -64 198 119 232 267 17 0 chr11 24159319 24159439 -126624114 + (TA)n Simple_repeat Simple_repeat 1 122 0 677 148 0 86 chr11 24159816 24159944 -126623609 - L1PA8A LINE L1 0 6131 6015 367 111 0 0 chr11 24159944 24159998 -126623555 - L1PA8 LINE L1 -119 6053 6000 243 340 82 20 chr11 24160277 24160424 -126623129 - MIR3 SINE MIR -12 196 41 637 263 86 0 chr11 24160670 24160845 -126622708 + MLT1L LTR MaLR 374 563 -52 3624 198 63 47 chr11 24160993 24162230 -126621323 - L1MD1 LINE L1 -2 6634 5378 358 204 129 0 chr11 24162576 24162669 -126620884 - L1MD1 LINE L1 -1217 5323 5219 307 285 79 6 chr11 24162670 24162835 -126620718 + L1M4 LINE L1 4652 4828 -1318 477 194 86 0 chr11 24162850 24162989 -126620564 - L1MD1 LINE L1 -4816 1724 1574 21098 116 23 4 chr11 24163125 24165409 -126618144 - L1PA8A LINE L1 -148 5983 3592 366 23 0 0 chr11 24165409 24165452 -126618101 + (TG)n Simple_repeat Simple_repeat 1 43 0 21098 116 23 4 chr11 24165452 24167124 -126616429 - L1PA8A LINE L1 -2539 3592 1952 1855 172 7 0 chr11 24167667 24167964 -126615589 - AluSx SINE Alu -10 302 4 216 0 0 0 chr11 24168021 24168045 -126615508 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1919 151 0 3 chr11 24168691 24168982 -126614571 - AluSx SINE Alu -11 301 12 4424 41 0 0 chr11 24168998 24169532 -126614021 + L1PA4 LINE L1 5621 6154 -1 22 0 0 0 chr11 24169547 24169569 -126613984 + AT_rich Low_complexity Low_complexity 1 22 0 229 233 0 33 chr11 24170446 24170536 -126613017 - MER103 DNA DNA -75 91 5 739 295 124 7 chr11 24170745 24171043 -126612510 + LTR16C LTR ERVL 159 491 0 298 244 128 1 chr11 24171293 24171430 -126612123 - MER67D LTR ERV1 -29 485 306 1469 172 6 83 chr11 24171477 24171814 -126611739 - MER67D LTR ERV1 -203 311 1 186 356 106 0 chr11 24171905 24172037 -126611516 + MIR SINE MIR 73 218 -44 1191 214 67 36 chr11 24172118 24172449 -126611104 - MLT1B LTR MaLR -49 341 1 228 111 0 0 chr11 24173658 24173694 -126609859 + (CA)n Simple_repeat Simple_repeat 2 37 0 189 263 70 79 chr11 24173746 24173860 -126609693 - MIR SINE MIR -37 225 113 309 312 28 35 chr11 24174046 24174187 -126609366 + MIR SINE MIR 116 255 -7 329 117 17 0 chr11 24175530 24175590 -126607963 + CT-rich Low_complexity Low_complexity 1 61 0 3882 210 46 36 chr11 24175735 24176822 -126606731 - L1MC1 LINE L1 -304 6309 5185 477 0 0 0 chr11 24176822 24176875 -126606678 + (TTA)n Simple_repeat Simple_repeat 2 54 0 3882 210 46 36 chr11 24176875 24177716 -126605837 - L1MC1 LINE L1 -1428 5185 4354 * 5366 183 47 61 chr11 24177712 24178999 -126604554 - L1MC1 LINE L1 -5154 1272 5 672 359 47 10 chr11 24179055 24179356 -126604197 - L1MDb LINE L1 -6086 323 12 228 246 49 41 chr11 24179774 24179896 -126603657 + L1ME4a LINE L1 5959 6081 -40 466 309 50 42 chr11 24179996 24180255 -126603298 + MIR SINE MIR 2 262 0 267 386 68 14 chr11 24181122 24181329 -126602224 + MIR SINE MIR 23 240 -22 275 237 11 0 chr11 24181371 24181464 -126602089 + (TA)n Simple_repeat Simple_repeat 2 95 0 320 344 62 26 chr11 24182362 24182557 -126600996 + MIR SINE MIR 11 212 -50 1234 96 6 6 chr11 24182635 24182813 -126600740 + L1MA1 LINE L1 6121 6298 -4 765 268 22 84 chr11 24182842 24183343 -126600210 + HAL1 LINE L1 1995 2464 -43 1150 204 35 0 chr11 24183343 24183573 -126599980 - L1MB1 LINE L1 -1 6167 5930 22 35 0 0 chr11 24184011 24184040 -126599513 + AT_rich Low_complexity Low_complexity 1 29 0 332 263 263 0 chr11 24184719 24184856 -126598697 - MIR SINE MIR -49 213 41 699 144 44 66 chr11 24185233 24185414 -126598139 + pTR5 LTR ERV1 743 919 -1519 461 16 2 0 chr11 24185629 24185692 -126597861 + pTR5 LTR ERV1 334 2438 0 311 257 129 0 chr11 24185692 24185793 -126597760 - L2 LINE L2 -796 2518 2405 582 204 59 8 chr11 24185931 24186103 -126597450 - L1M4 LINE L1 -2623 3523 3346 1835 297 89 27 chr11 24186776 24187796 -126595757 + L2 LINE L2 2218 3312 -1 22 0 0 0 chr11 24188297 24188319 -126595234 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr11 24188699 24188735 -126594818 + GC_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr11 24190629 24190659 -126592894 + AT_rich Low_complexity Low_complexity 1 30 0 204 125 0 0 chr11 24190914 24190946 -126592607 + (TG)n Simple_repeat Simple_repeat 1 32 0 180 339 113 57 chr11 24191009 24191186 -126592367 + MIR3 SINE MIR 19 205 -3 2073 125 3 7 chr11 24192221 24192525 -126591028 + AluSx SINE Alu 1 303 -9 1903 173 47 9 chr11 24195044 24195496 -126588057 - L1MA8 LINE L1 -4 7706 7238 1580 203 3 19 chr11 24195516 24195549 -126588004 - AluJo SINE Alu -6 306 274 2051 121 63 30 chr11 24195549 24195912 -126587641 + THE1C LTR MaLR 1 375 0 1580 203 3 19 chr11 24195912 24196189 -126587364 - AluJo SINE Alu -38 274 1 11221 190 45 10 chr11 24196193 24199163 -126584390 - L1MA8 LINE L1 -467 7243 4171 601 245 50 6 chr11 24199168 24199327 -126584226 + L1M4 LINE L1 2607 2772 -3374 2471 235 47 3 chr11 24199341 24200051 -126583502 + L1M4 LINE L1 3284 4024 -2122 21 0 0 0 chr11 24200051 24200072 -126583481 + AT_rich Low_complexity Low_complexity 1 21 0 311 43 0 22 chr11 24200205 24200251 -126583302 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 9623 30 16 0 chr11 24200251 24202152 -126581401 - L1PA3 LINE L1 -24 6131 4199 * 13751 28 2 0 chr11 24202117 24203780 -126579773 + L1PA3 LINE L1 2567 4232 -1914 2495 233 31 12 chr11 24203762 24204641 -126578912 - L1MA8 LINE L1 -3365 4200 3306 * 1809 183 47 48 chr11 24204774 24205333 -126578220 - L1 LINE L1 -2895 4670 4113 * 2469 202 22 73 chr11 24205324 24206107 -126577446 - L1 LINE L1 -3810 3755 3036 1278 170 53 82 chr11 24206107 24206425 -126577128 - AluJo SINE Alu -3 309 1 2469 202 22 73 chr11 24206425 24206694 -126576859 - L1 LINE L1 -4529 3036 2755 21 0 0 0 chr11 24206716 24206737 -126576816 + AT_rich Low_complexity Low_complexity 1 21 0 231 61 0 0 chr11 24206783 24206816 -126576737 + (TG)n Simple_repeat Simple_repeat 1 33 0 2120 222 107 0 chr11 24207210 24207724 -126575829 - LTR36 LTR ERV1 -2 609 41 308 176 121 22 chr11 24207728 24207819 -126575734 - LTR36 LTR ERV1 -511 100 1 223 326 53 32 chr11 24208134 24208229 -126575324 + MIR SINE MIR 49 145 -63 1988 136 0 7 chr11 24209044 24209346 -126574207 - AluSx SINE Alu -12 300 1 5774 82 4 11 chr11 24209405 24210166 -126573387 + LTR17 LTR ERV1 1 756 -24 21 0 0 0 chr11 24210348 24210369 -126573184 + AT_rich Low_complexity Low_complexity 1 21 0 195 347 13 47 chr11 24210661 24210811 -126572742 + MIR SINE MIR 68 212 -50 328 308 25 58 chr11 24210894 24211014 -126572539 - L2 LINE L2 -8 3305 3190 1377 239 66 58 chr11 24211897 24212398 -126571155 - MLT1D LTR MaLR 0 505 1 457 281 41 35 chr11 24212934 24213105 -126570448 - MIR SINE MIR -82 180 9 446 18 18 0 chr11 24213615 24213672 -126569881 - L1PA5 LINE L1 -1320 4826 4769 6932 47 1 2 chr11 24213676 24214943 -126568610 + L1PA5 LINE L1 4840 6105 -49 813 185 6 17 chr11 24215081 24215254 -126568299 + AluSg/x SINE Alu 140 310 0 24 67 0 0 chr11 24215691 24215736 -126567817 + AT_rich Low_complexity Low_complexity 1 45 0 186 103 0 0 chr11 24216023 24216052 -126567501 + (TC)n Simple_repeat Simple_repeat 2 30 0 221 339 16 79 chr11 24217571 24217698 -126565855 - MIR3 SINE MIR -75 133 15 25 0 0 0 chr11 24217731 24217756 -126565797 + AT_rich Low_complexity Low_complexity 1 25 0 29 47 0 0 chr11 24217784 24217827 -126565726 + AT_rich Low_complexity Low_complexity 1 43 0 29 0 0 0 chr11 24218631 24218660 -126564893 + AT_rich Low_complexity Low_complexity 1 29 0 187 316 26 40 chr11 24219538 24219614 -126563939 - MIR SINE MIR -186 76 2 388 235 134 8 chr11 24219634 24219753 -126563800 + MER45A DNA AcHobo 44 177 -1 214 386 71 33 chr11 24220905 24221089 -126562464 - L2 LINE L2 -251 3062 2872 1186 96 56 20 chr11 24221228 24221426 -126562127 - L1PA8 LINE L1 -10 6162 5958 22 35 0 0 chr11 24221777 24221806 -126561747 + AT_rich Low_complexity Low_complexity 1 29 0 184 304 120 54 chr11 24222087 24222179 -126561374 - L2 LINE L2 -9 3263 3166 1306 276 59 52 chr11 24222285 24222821 -126560732 - MLT1F LTR MaLR -3 552 1 233 245 16 0 chr11 24222823 24222892 -126560661 - MLT1F-int LTR MaLR -2 1727 1306 287 210 108 132 chr11 24222967 24223134 -126560419 - MLT1F-int LTR MaLR -173 1198 1036 45 19 0 0 chr11 24223407 24223459 -126560094 + AT_rich Low_complexity Low_complexity 1 52 0 51 31 0 0 chr11 24225019 24225084 -126558469 + AT_rich Low_complexity Low_complexity 1 65 0 584 211 53 70 chr11 24225210 24225381 -126558172 - MLT1A2 LTR MaLR -206 168 1 522 341 73 18 chr11 24225666 24225939 -126557614 + L2 LINE L2 2654 2941 -373 342 115 0 0 chr11 24226410 24226471 -126557082 + (TC)n Simple_repeat Simple_repeat 2 62 0 300 27 0 0 chr11 24226471 24226508 -126557045 + (CA)n Simple_repeat Simple_repeat 1 37 0 223 332 85 40 chr11 24226852 24227051 -126556502 + L3 LINE CR1 1011 1218 -359 193 326 148 0 chr11 24229128 24229263 -126554290 + MIR SINE MIR 77 231 -31 28 0 0 0 chr11 24229498 24229526 -126554027 + AT_rich Low_complexity Low_complexity 1 28 0 238 123 35 0 chr11 24230501 24230558 -126552995 + (TA)n Simple_repeat Simple_repeat 1 59 0 25 0 0 0 chr11 24230745 24230770 -126552783 + AT_rich Low_complexity Low_complexity 1 25 0 933 246 142 28 chr11 24230793 24231110 -126552443 - MLT1A2 LTR MaLR -4 370 18 3127 169 21 14 chr11 24231627 24232255 -126551298 - L1MA8 LINE L1 0 6291 5660 23 0 0 0 chr11 24232323 24232346 -126551207 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 24232705 24232728 -126550825 + AT_rich Low_complexity Low_complexity 1 23 0 192 388 0 0 chr11 24233613 24233680 -126549873 + MIR SINE MIR 18 84 -178 591 243 81 24 chr11 24233692 24233902 -126549651 + L1ME2 LINE L1 3906 4127 -2019 * 647 242 88 56 chr11 24233898 24234394 -126549159 + L1ME2 LINE L1 4996 5515 -647 384 194 0 75 chr11 24234438 24234531 -126549022 + MER58A DNA MER1_type 47 132 0 245 290 0 0 chr11 24234535 24234597 -126548956 + MER58A DNA MER1_type 162 223 -1 1576 252 76 26 chr11 24234612 24235215 -126548338 + L1ME2 LINE L1 5522 6154 -10 1677 185 79 5 chr11 24236390 24236768 -126546785 + L1PA13 LINE L1 2353 2758 -3388 5892 190 40 15 chr11 24236768 24238790 -126544763 + L1PA13 LINE L1 4099 6162 -1 237 224 15 30 chr11 24239825 24239892 -126543661 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 714 283 136 18 chr11 24239929 24240201 -126543352 + L2 LINE L2 2998 3301 -12 3279 164 39 8 chr11 24240228 24240851 -126542702 + MER73 LTR ERVL 1 642 -2 186 43 0 0 chr11 24241194 24241217 -126542336 + (A)n Simple_repeat Simple_repeat 1 23 0 782 173 0 0 chr11 24241847 24241997 -126541556 + L1 LINE L1 3259 3408 -2738 1901 164 7 0 chr11 24242596 24242900 -126540653 - AluSx SINE Alu -6 306 1 2305 82 20 0 chr11 24243561 24243864 -126539689 + AluY SINE Alu 1 309 -2 183 295 16 108 chr11 24245404 24245533 -126538020 - L2 LINE L2 -237 3035 2919 354 23 0 0 chr11 24246784 24246827 -126536726 + (CA)n Simple_repeat Simple_repeat 2 44 0 30 0 0 0 chr11 24247545 24247575 -126535978 + AT_rich Low_complexity Low_complexity 1 30 0 44 46 0 0 chr11 24247791 24247856 -126535697 + AT_rich Low_complexity Low_complexity 1 65 0 185 333 54 21 chr11 24248054 24248147 -126535406 + L2 LINE L2 2443 2538 -776 36 87 0 0 chr11 24248307 24248399 -126535154 + AT_rich Low_complexity Low_complexity 1 92 0 437 243 75 29 chr11 24248540 24248713 -126534840 + MIR SINE MIR 82 262 0 1033 72 7 33 chr11 24250168 24250321 -126533232 + L1PA7 LINE L1 6006 6154 0 566 197 0 0 chr11 24250889 24251016 -126532537 + L1MA5 LINE L1 3032 3158 -2988 4696 163 31 27 chr11 24251016 24251916 -126531637 + L1MA5 LINE L1 5397 6300 0 714 277 78 3 chr11 24251919 24252291 -126531262 - MER69 DNA AcHobo -117 2409 2010 450 353 68 4 chr11 24252289 24252538 -126531015 - MER69 DNA AcHobo -1958 568 304 * 1052 239 5 69 chr11 24252727 24253103 -126530450 - MLT1A2 LTR MaLR 0 374 23 348 24 0 0 chr11 24253973 24254014 -126529539 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 233 123 14 chr11 24254423 24254496 -126529057 + MIR SINE MIR 38 118 -90 181 361 69 0 chr11 24255249 24255321 -126528232 - L2 LINE L2 -13 3300 3224 24 85 0 0 chr11 24256174 24256233 -126527320 + AT_rich Low_complexity Low_complexity 1 59 0 411 162 9 81 chr11 24257402 24257513 -126526040 + L1M1 LINE L1 16 118 -7447 * 11505 166 15 5 chr11 24257512 24259977 -126523576 + L1M1 LINE L1 445 3035 -4530 188 301 72 12 chr11 24259997 24260080 -126523473 + L2 LINE L2 3226 3313 0 233 297 62 0 chr11 24260145 24260209 -126523344 - MER91C DNA MER1_type -42 98 31 275 299 22 66 chr11 24260235 24260372 -126523181 + L2 LINE L2 3182 3312 -1 2687 85 3 0 chr11 24260895 24261249 -126522304 + THE1A LTR MaLR 1 355 0 2184 242 64 22 chr11 24261717 24262313 -126521240 + MLT1E2 LTR MaLR 6 626 0 186 219 96 41 chr11 24262357 24262407 -126521146 - L2 LINE L2 -83 3230 3173 966 228 31 97 chr11 24262407 24262798 -126520755 - MLT1A1 LTR MaLR 0 365 1 186 219 96 41 chr11 24262798 24262820 -126520733 - L2 LINE L2 -140 3173 3154 1752 262 111 32 chr11 24262849 24263664 -126519889 + L1MDa LINE L1 1 1112 -5428 297 370 8 0 chr11 24263931 24264058 -126519495 - MER94 DNA DNA -6 128 1 938 159 22 6 chr11 24264674 24264856 -126518697 - L1MA10 LINE L1 -8 6326 6142 950 356 14 43 chr11 24264861 24265488 -126518065 + L1PA16 LINE L1 789 1397 -6177 263 342 30 13 chr11 24265509 24265719 -126517834 + L1PA16 LINE L1 2084 2303 -5271 841 246 14 100 chr11 24265937 24266286 -126517267 + L1PA16 LINE L1 2171 2489 -5092 * 4706 181 41 27 chr11 24266282 24267722 -126515831 + L1PA16 LINE L1 6147 7604 0 671 180 0 0 chr11 24267727 24267849 -126515704 - L1MB1 LINE L1 -44 6145 6024 2498 184 15 29 chr11 24267853 24268161 -126515392 + L1MB1 LINE L1 5343 5643 -525 2104 124 53 28 chr11 24268161 24268516 -126515037 - THE1B LTR MaLR 0 364 1 2498 184 15 29 chr11 24268516 24268729 -126514824 + L1MB1 LINE L1 5643 5857 -311 240 282 13 64 chr11 24269888 24269966 -126513587 - L2 LINE L2 -8 3305 3232 1907 136 3 32 chr11 24270110 24270420 -126513133 + AluSx SINE Alu 1 301 -11 2130 159 78 8 chr11 24270992 24271388 -126512165 - MSTA LTR MaLR -4 424 1 293 377 48 26 chr11 24271576 24271807 -126511746 + MIR SINE MIR 23 258 -4 180 345 12 36 chr11 24272347 24272431 -126511122 - MIR3 SINE MIR -14 194 113 1447 274 25 43 chr11 24273719 24274273 -126509280 + L1MC4 LINE L1 6467 7010 -1032 1343 216 53 58 chr11 24274274 24274825 -126508728 + L1MC4 LINE L1 7180 7715 -93 305 270 82 31 chr11 24274983 24275179 -126508374 + L1M4 LINE L1 3115 3320 -2826 419 318 88 9 chr11 24275352 24275773 -126507780 + L1M4 LINE L1 3502 3955 -2191 2141 115 0 13 chr11 24275801 24276113 -126507440 - AluSx SINE Alu -4 308 1 300 289 78 64 chr11 24276166 24276329 -126507224 + L1M4 LINE L1 4030 4198 -1948 2258 58 45 0 chr11 24276329 24276620 -126506933 - AluY SINE Alu -7 304 1 300 289 78 64 chr11 24276620 24276674 -126506879 + L1M4 LINE L1 4198 4250 -1896 214 226 48 107 chr11 24277016 24277100 -126506453 + MIR SINE MIR 122 200 -62 3895 107 98 107 chr11 24278156 24279535 -126504018 + pTR5 LTR ERV1 743 2438 0 182 329 26 13 chr11 24279538 24279614 -126503939 + MIR3 SINE MIR 121 197 -11 313 204 0 146 chr11 24280216 24280319 -126503234 + MER21B LTR ERV1 1 88 -775 1612 286 102 46 chr11 24280343 24281088 -126502465 + MER21B LTR ERV1 17 803 -60 624 341 121 38 chr11 24281380 24281885 -126501668 + L2 LINE L2 2348 2894 -420 231 167 0 0 chr11 24282233 24282275 -126501278 + (TA)n Simple_repeat Simple_repeat 1 42 0 202 178 68 0 chr11 24282307 24282380 -126501173 + (TA)n Simple_repeat Simple_repeat 1 78 0 296 322 87 48 chr11 24282571 24282779 -126500774 + MIR SINE MIR 5 220 -42 753 282 8 43 chr11 24283630 24283864 -126499689 + MER110-int LTR ERV1 3687 3912 -735 351 0 0 0 chr11 24283868 24283907 -126499646 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7254 56 0 1 chr11 24283908 24285600 -126497953 + L1PA5 LINE L1 4469 6154 0 843 273 36 25 chr11 24285666 24286000 -126497553 + MER110A LTR ERV1 176 491 0 25 31 0 0 chr11 24286960 24286992 -126496561 + AT_rich Low_complexity Low_complexity 1 32 0 5015 203 64 3 chr11 24288986 24290049 -126493504 - L1MA1 LINE L1 0 7721 6584 1419 125 19 0 chr11 24290051 24290259 -126493294 - AluSg/x SINE Alu -8 304 93 553 132 0 0 chr11 24290259 24290335 -126493218 + AluS SINE Alu 17 92 -221 8864 195 28 7 chr11 24290335 24291692 -126491861 - L1MA1 LINE L1 -976 6589 5178 1995 136 74 8 chr11 24291692 24292044 -126491509 - THE1C LTR MaLR 0 375 1 8864 195 28 7 chr11 24292044 24292635 -126490918 - L1MA1 LINE L1 -2387 5178 4601 1538 189 112 50 chr11 24292640 24292817 -126490736 + MSTA LTR MaLR 1 166 -262 2379 73 0 3 chr11 24292817 24293119 -126490434 + AluY SINE Alu 1 301 -10 1538 189 112 50 chr11 24293119 24293344 -126490209 + MSTA LTR MaLR 166 428 0 7209 157 107 41 chr11 24293346 24294826 -126488727 + MSTA-int LTR MaLR 3 1580 0 1761 168 127 21 chr11 24294826 24295213 -126488340 + MSTA LTR MaLR 1 428 0 455 196 0 0 chr11 24295213 24295320 -126488233 - L1MA1 LINE L1 -2975 4590 4484 753 262 111 21 chr11 24295444 24295723 -126487830 + MSTA LTR MaLR 125 428 0 3216 220 37 31 chr11 24295724 24296966 -126486587 - L1MA1 LINE L1 -2975 4590 3347 6781 71 0 0 chr11 24296971 24298643 -126484910 - L1PA6 LINE L1 -4 6150 4473 3785 67 2 2 chr11 24298646 24299155 -126484398 + L1P LINE L1 3164 3672 -2474 1607 121 7 28 chr11 24299151 24299440 -126484113 + L1M1 LINE L1 2492 2774 -4791 * 2892 228 52 51 chr11 24299431 24300212 -126483341 - L1MA1 LINE L1 -6767 798 17 231 85 0 21 chr11 24300710 24300757 -126482796 + LTR66 LTR ERVL 394 439 -171 351 174 8 41 chr11 24300821 24300942 -126482611 + (TA)n Simple_repeat Simple_repeat 1 117 0 241 133 0 0 chr11 24300975 24301020 -126482533 + LTR66 LTR ERVL 394 438 -172 * 264 172 52 0 chr11 24300980 24301038 -126482515 - LTR66 LTR ERVL -172 438 378 1001 128 67 17 chr11 24301076 24301196 -126482357 + L1PB1 LINE L1 5833 5966 -185 1800 108 0 4 chr11 24301196 24301445 -126482108 + AluSg SINE Alu 7 254 -56 1001 128 67 17 chr11 24301445 24301503 -126482050 + L1PB1 LINE L1 5966 6020 -131 180 0 0 0 chr11 24301505 24301525 -126482028 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 232 91 45 0 chr11 24301821 24301865 -126481688 + (TA)n Simple_repeat Simple_repeat 1 46 0 232 172 0 0 chr11 24301889 24301947 -126481606 + LTR66 LTR ERVL 404 461 -149 1503 67 5 0 chr11 24301947 24302142 -126481411 - L1P5 LINE L1 -395 5756 5561 2262 11 0 8 chr11 24302640 24302903 -126480650 + AluY SINE Alu 39 299 -12 692 263 60 29 chr11 24303255 24303571 -126479982 + L1M4 LINE L1 2372 2697 -3449 327 266 46 0 chr11 24303701 24303810 -126479743 + L1M4 LINE L1 4357 4470 -1676 283 263 79 68 chr11 24304041 24304231 -126479322 + L1M4 LINE L1 4787 4978 -1168 2049 120 7 3 chr11 24305020 24305328 -126478225 - AluSx SINE Alu -3 309 1 22 0 0 0 chr11 24305982 24306004 -126477549 + AT_rich Low_complexity Low_complexity 1 22 0 10437 229 66 19 chr11 24306128 24309323 -126474230 + L1MA7 LINE L1 2117 5160 -1131 1207 225 110 22 chr11 24309323 24309687 -126473866 + MSTD LTR MaLR 1 396 0 10437 229 66 19 chr11 24309687 24309982 -126473571 + L1MA7 LINE L1 5160 5440 -851 1094 204 9 0 chr11 24309982 24310212 -126473341 - MER46A DNA MER2_type 0 236 5 10437 229 66 19 chr11 24310212 24310711 -126472842 + L1MA7 LINE L1 5440 6291 0 283 374 74 0 chr11 24311042 24311232 -126472321 + MIR SINE MIR 45 248 -14 344 198 0 12 chr11 24312441 24312527 -126471026 + GA-rich Low_complexity Low_complexity 3 87 0 1952 72 4 4 chr11 24312542 24312826 -126470727 - AluY SINE Alu 0 317 34 205 298 24 0 chr11 24313143 24313227 -126470326 + (TA)n Simple_repeat Simple_repeat 1 86 0 228 295 0 21 chr11 24313236 24313331 -126470222 + GA-rich Low_complexity Low_complexity 3 95 0 251 277 185 31 chr11 24313340 24313470 -126470083 - MIR3 SINE MIR -28 180 31 25 0 0 0 chr11 24314140 24314165 -126469388 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr11 24314393 24314415 -126469138 + AT_rich Low_complexity Low_complexity 1 22 0 5996 95 33 8 chr11 24314473 24315356 -126468197 - L1PA10 LINE L1 -4 6164 5260 5065 158 6 81 chr11 24315355 24316510 -126467043 + L1P LINE L1 2585 3653 -2493 * 4644 146 32 9 chr11 24316519 24317335 -126466218 + L1P LINE L1 4365 5199 -947 26 30 0 0 chr11 24317527 24317560 -126465993 + AT_rich Low_complexity Low_complexity 1 33 0 1403 214 13 22 chr11 24317577 24317890 -126465663 - AluJo SINE Alu -2 310 1 362 352 141 0 chr11 24318511 24318724 -126464829 - MIR SINE MIR -14 248 6 227 204 0 0 chr11 24319364 24319413 -126464140 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 191 235 15 73 chr11 24319468 24319536 -126464017 - L2 LINE L2 -2 3311 3248 1668 184 0 0 chr11 24319952 24320229 -126463324 + AluJo SINE Alu 10 286 -26 380 246 45 0 chr11 24320297 24320407 -126463146 - MER103 DNA DNA -49 117 3 23 0 0 0 chr11 24320561 24320584 -126462969 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr11 24321003 24321039 -126462514 + AT_rich Low_complexity Low_complexity 1 36 0 2232 110 0 0 chr11 24321868 24322178 -126461375 - AluSg SINE Alu 0 310 1 539 142 62 9 chr11 24322277 24322390 -126461163 - L1MA4 LINE L1 -6 6294 6176 377 262 138 37 chr11 24322411 24323115 -126460438 - L1ME3 LINE L1 -213 5951 5139 1378 256 42 26 chr11 24323120 24323573 -126459980 - MER65C LTR ERV1 -1 460 1 322 270 45 0 chr11 24324108 24324197 -126459356 + L1MC4 LINE L1 6613 6705 -1337 207 179 45 0 chr11 24324198 24324265 -126459288 + (TA)n Simple_repeat Simple_repeat 1 70 0 250 226 20 88 chr11 24324363 24324465 -126459088 + MER5B DNA MER1_type 83 177 -1 2173 309 40 14 chr11 24324485 24325178 -126458375 + L1M4b LINE L1 18 728 -6131 1809 233 14 21 chr11 24325196 24325630 -126457923 + L1M4b LINE L1 942 1372 -5487 24 67 0 0 chr11 24325914 24325959 -126457594 + AT_rich Low_complexity Low_complexity 1 45 0 225 343 15 0 chr11 24326257 24326324 -126457229 - L2 LINE L2 -2 3311 3244 414 323 48 12 chr11 24326398 24326565 -126456988 - MIR SINE MIR -82 180 8 2098 107 41 0 chr11 24327433 24327724 -126455829 - AluSx SINE Alu -9 303 1 53 73 0 0 chr11 24328018 24328127 -126455426 + AT_rich Low_complexity Low_complexity 1 109 0 290 306 118 21 chr11 24328232 24328418 -126455135 + MIR SINE MIR 49 252 -10 22 80 0 0 chr11 24328477 24328527 -126455026 + AT_rich Low_complexity Low_complexity 1 50 0 515 302 145 44 chr11 24328914 24329731 -126453822 - L2 LINE L2 -2 3311 2418 1098 257 10 0 chr11 24330509 24330801 -126452752 + L1 LINE L1 2755 3049 -3097 6042 253 75 32 chr11 24330909 24331543 -126452010 + L1M4b LINE L1 1595 2200 -4757 1729 113 17 66 chr11 24331543 24331844 -126451709 + AluSq SINE Alu 28 313 0 6042 253 75 32 chr11 24331844 24332301 -126451252 + L1M4b LINE L1 2200 2636 -4321 287 19 37 37 chr11 24332301 24332355 -126451198 + (TA)n Simple_repeat Simple_repeat 1 54 0 6042 253 75 32 chr11 24332355 24335256 -126448297 + L1M4b LINE L1 2636 5759 -1198 426 252 9 0 chr11 24335284 24335395 -126448158 + L1M4b LINE L1 5943 6054 -903 601 323 11 48 chr11 24336574 24336843 -126446710 + MIR SINE MIR 3 261 -1 198 71 0 0 chr11 24337044 24337072 -126446481 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 256 113 113 0 chr11 24337072 24337125 -126446428 - L1MC2 LINE L1 -14 6330 6272 786 209 53 5 chr11 24337128 24337315 -126446238 - L1MCa LINE L1 -6224 202 7 352 278 0 0 chr11 24337571 24337668 -126445885 - MER117 DNA MER1_type -99 98 2 423 225 26 10 chr11 24337779 24337908 -126445645 - MLT1J1 LTR MaLR 0 489 349 25 31 0 0 chr11 24338484 24338516 -126445037 + AT_rich Low_complexity Low_complexity 1 32 0 241 240 210 20 chr11 24339214 24339314 -126444239 + MIR SINE MIR 23 141 -121 201 321 12 37 chr11 24339424 24339437 -126444116 - L2 LINE L2 -1 3312 3300 1199 166 78 108 chr11 24339437 24339901 -126443652 - LTR7 LTR ERV1 0 450 1 201 321 12 37 chr11 24339901 24339968 -126443585 - L2 LINE L2 -13 3300 3234 1810 143 7 7 chr11 24339992 24340292 -126443261 + AluJb SINE Alu 13 312 0 260 265 72 72 chr11 24340393 24340476 -126443077 - MIR SINE MIR -173 89 7 1163 238 24 62 chr11 24340731 24341071 -126442482 - MLT1E2 LTR MaLR -4 622 296 383 240 10 10 chr11 24341286 24341386 -126442167 + L1PA15-16 LINE L1 1474 1573 -5276 * 854 211 46 48 chr11 24341374 24341650 -126441903 + L1PB4 LINE L1 1347 1622 -5227 1677 176 0 35 chr11 24341650 24341968 -126441585 + AluJb SINE Alu 1 307 -5 854 211 46 48 chr11 24341968 24342189 -126441364 + L1PB4 LINE L1 1622 1932 -4917 10225 187 27 91 chr11 24342203 24343924 -126439629 + L1PB4 LINE L1 3001 4831 -2028 2007 177 3 20 chr11 24343924 24344268 -126439285 - MER1B DNA MER1_type 0 339 2 10225 187 27 91 chr11 24344268 24346344 -126437209 + L1PB4 LINE L1 4831 6859 0 1384 170 117 11 chr11 24346457 24346739 -126436814 + AluJb SINE Alu 1 312 0 703 264 7 0 chr11 24346803 24346951 -126436602 - MLT1F1 LTR MaLR -90 477 329 32 67 0 0 chr11 24347600 24347660 -126435893 + AT_rich Low_complexity Low_complexity 1 60 0 21 57 0 0 chr11 24348673 24348708 -126434845 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr11 24348735 24348772 -126434781 + AT_rich Low_complexity Low_complexity 1 37 0 180 180 0 54 chr11 24348887 24348998 -126434555 + (TATAG)n Simple_repeat Simple_repeat 1 105 0 277 326 0 54 chr11 24349125 24349254 -126434299 + L1MB1 LINE L1 1945 2066 -5420 1063 263 64 10 chr11 24349280 24350080 -126433473 + L1MB1 LINE L1 3021 3870 -3695 598 147 0 0 chr11 24350106 24350201 -126433352 + L1MB1 LINE L1 5486 5580 -1985 2831 192 27 2 chr11 24350222 24350815 -126432738 + L1MB1 LINE L1 6980 7587 0 281 271 12 0 chr11 24351115 24351200 -126432353 + (TA)n Simple_repeat Simple_repeat 2 87 0 744 240 86 57 chr11 24351366 24351404 -126432149 + MLT1B LTR MaLR 1 36 -354 2024 125 10 0 chr11 24351404 24351699 -126431854 - AluSq SINE Alu -13 300 3 744 240 86 57 chr11 24351699 24351939 -126431614 + MLT1B LTR MaLR 36 287 -103 409 271 0 19 chr11 24352422 24352529 -126431024 - MLT1K LTR MaLR -2 586 482 24 32 0 0 chr11 24353179 24353210 -126430343 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr11 24353274 24353309 -126430244 + AT_rich Low_complexity Low_complexity 1 35 0 1830 237 78 9 chr11 24354514 24354961 -126428592 - ERVL-B1 LTR ERVL -5285 479 2 1029 231 218 49 chr11 24354962 24355407 -126428146 - MLT2B1 LTR ERVL 0 520 1 2496 47 30 0 chr11 24356148 24356449 -126427104 - AluY SINE Alu -1 310 1 185 0 0 39 chr11 24359287 24359313 -126424240 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 2466 73 0 0 chr11 24359313 24359630 -126423923 - L1PA7 LINE L1 -16 6138 5822 2678 43 0 46 chr11 24359630 24359945 -126423608 + L1P3 LINE L1 5475 5774 -380 2235 107 3 0 chr11 24359945 24360255 -126423298 + AluY SINE Alu 1 311 0 2678 43 0 46 chr11 24360255 24360290 -126423263 + L1P3 LINE L1 5774 5809 -345 2410 91 0 0 chr11 24361389 24361698 -126421855 - AluY SINE Alu -2 309 1 251 159 58 0 chr11 24361729 24361798 -126421755 + (TA)n Simple_repeat Simple_repeat 1 73 0 1353 221 54 96 chr11 24361894 24362596 -126420957 - MER61E LTR ERV1 0 779 2 889 263 90 74 chr11 24363797 24364565 -126418988 + L1M4 LINE L1 719 1498 -5044 2462 257 49 37 chr11 24364568 24365321 -126418232 + L1M4 LINE L1 2389 3101 -3543 2221 116 3 0 chr11 24365321 24365624 -126417929 + AluSq SINE Alu 3 306 -7 2462 257 49 37 chr11 24365624 24366231 -126417322 + L1M4 LINE L1 3101 3699 -2945 235 308 39 0 chr11 24366542 24366620 -126416933 - MLT1J LTR MaLR -9 502 422 463 284 154 12 chr11 24366634 24366796 -126416757 - MER63A DNA MER1_type -25 185 1 530 232 28 109 chr11 24367513 24367651 -126415902 + MLT1D LTR MaLR 1 118 -387 2012 130 75 20 chr11 24367651 24367996 -126415557 + THE1B LTR MaLR 1 364 0 530 232 28 109 chr11 24367996 24368068 -126415485 + MLT1D LTR MaLR 118 194 -311 541 264 62 65 chr11 24368083 24368390 -126415163 + MER21B LTR ERV1 408 713 -150 250 228 8 39 chr11 24368805 24368932 -126414621 + T-rich Low_complexity Low_complexity 3 125 0 247 223 0 32 chr11 24370226 24370320 -126413233 + (CATATA)n Simple_repeat Simple_repeat 2 92 0 547 230 31 50 chr11 24370430 24370591 -126412962 + MER90 LTR ERV1 3 160 -415 2213 106 3 0 chr11 24370716 24371017 -126412536 - AluSp SINE Alu -11 302 1 224 381 60 8 chr11 24371965 24372099 -126411454 + MIR SINE MIR 17 157 -105 236 310 55 55 chr11 24372211 24372356 -126411197 - L2 LINE L2 -341 2973 2829 906 283 175 31 chr11 24372438 24373187 -126410366 + Charlie2 DNA MER1_type 1927 2783 -79 1662 124 124 0 chr11 24373250 24373517 -126410036 + AluSx SINE Alu 1 300 -2 3294 179 75 8 chr11 24373517 24374233 -126409320 - LTR1B LTR ERV1 -6 779 1 44 63 0 0 chr11 24374517 24374596 -126408957 + AT_rich Low_complexity Low_complexity 1 79 0 216 352 86 0 chr11 24375077 24375182 -126408371 - L2 LINE L2 -56 3216 3103 429 243 68 57 chr11 24375654 24375831 -126407722 + L1MEc LINE L1 14 192 -6204 23 0 0 0 chr11 24375880 24375903 -126407650 + AT_rich Low_complexity Low_complexity 1 23 0 379 257 81 14 chr11 24375904 24376052 -126407501 + L1MEc LINE L1 1875 2032 -4364 295 294 77 21 chr11 24376145 24376288 -126407265 + L1MEc LINE L1 2051 2201 -4195 465 245 182 19 chr11 24376335 24376653 -126406900 + L1MEc LINE L1 3222 3591 -2624 251 241 84 36 chr11 24377046 24377129 -126406424 - LTR33 LTR ERVL -136 385 299 431 229 109 70 chr11 24377470 24377671 -126405882 - MIR SINE MIR -24 238 30 392 338 15 8 chr11 24378367 24378500 -126405053 - MIR SINE MIR -105 157 24 206 239 22 0 chr11 24378518 24378564 -126404989 - MIR SINE MIR -171 91 45 493 315 123 0 chr11 24378661 24378823 -126404730 - MIR SINE MIR -13 249 68 224 173 80 0 chr11 24378921 24378996 -126404557 + (TTAAA)n Simple_repeat Simple_repeat 3 83 0 1451 256 77 60 chr11 24379048 24379583 -126403970 + MER90 LTR ERV1 70 613 -1 281 317 24 32 chr11 24380745 24380868 -126402685 - MLT1K LTR MaLR -368 220 99 195 100 0 0 chr11 24381008 24381038 -126402515 + (TA)n Simple_repeat Simple_repeat 2 31 0 484 28 14 42 chr11 24381096 24381168 -126402385 - L1PA8 LINE L1 -6 6166 6097 31 0 0 0 chr11 24381201 24381232 -126402321 + AT_rich Low_complexity Low_complexity 1 31 0 185 287 253 0 chr11 24382042 24382129 -126401424 + MIR SINE MIR 31 139 -69 391 293 43 30 chr11 24382137 24382301 -126401252 + MIR SINE MIR 49 214 -48 190 222 89 56 chr11 24382353 24382443 -126401110 + L2 LINE L2 3021 3113 -200 373 214 38 61 chr11 24382524 24382655 -126400898 - MER97a DNA MER1_type? -303 591 464 310 308 60 26 chr11 24383027 24383144 -126400409 + MIR3 SINE MIR 5 125 -83 1978 136 7 0 chr11 24383592 24383886 -126399667 + AluSx SINE Alu 1 296 -16 195 360 72 16 chr11 24384276 24384401 -126399152 + MIR SINE MIR 26 157 -105 356 141 0 28 chr11 24384956 24385027 -126398526 + (TATATG)n Simple_repeat Simple_repeat 6 74 0 261 209 0 0 chr11 24385991 24386058 -126397495 + CT-rich Low_complexity Low_complexity 2 68 0 467 284 133 34 chr11 24386180 24386953 -126396600 - L1MCc LINE L1 -4892 1531 1159 2020 166 145 30 chr11 24388236 24388741 -126394812 - LTR49 LTR ERV1 -32 563 1 250 172 69 58 chr11 24388931 24389018 -126394535 + L1M4 LINE L1 4121 4208 -1938 1480 164 26 11 chr11 24389089 24389357 -126394196 - MER4D LTR ERV1 0 903 632 1219 197 15 42 chr11 24389357 24389523 -126394030 - LTR8 LTR ERV1 0 691 533 1889 180 80 10 chr11 24389523 24389923 -126393630 - MSTA LTR MaLR 0 428 1 1219 197 15 42 chr11 24389923 24390015 -126393538 - LTR8 LTR ERV1 -158 533 440 1900 127 16 37 chr11 24390030 24390352 -126393201 - LTR8 LTR ERV1 -376 315 1 * 3381 166 52 5 chr11 24390352 24390961 -126392592 - MER4D LTR ERV1 -265 638 1 29663 118 15 62 chr11 24391363 24397828 -126385725 - L1PA7 LINE L1 0 6154 12 2021 120 9 25 chr11 24397847 24398164 -126385389 - AluSx SINE Alu 0 312 1 22 35 0 0 chr11 24398938 24398967 -126384586 + AT_rich Low_complexity Low_complexity 1 29 0 1678 189 0 7 chr11 24399405 24399712 -126383841 - AluJo SINE Alu -7 305 1 235 335 95 22 chr11 24399734 24399913 -126383640 + L3 LINE CR1 1386 1577 0 2381 97 0 0 chr11 24403995 24404304 -126379249 - AluSc SINE Alu 0 309 1 288 332 118 35 chr11 24405139 24405368 -126378185 + MIR SINE MIR 15 262 0 214 288 0 0 chr11 24405739 24405798 -126377755 + T-rich Low_complexity Low_complexity 1 59 0 832 167 13 0 chr11 24405832 24405982 -126377571 + MER67D LTR ERV1 1 152 -362 249 313 12 0 chr11 24406020 24406100 -126377453 - AluSc SINE Alu -21 278 198 24 32 0 0 chr11 24406538 24406569 -126376984 + AT_rich Low_complexity Low_complexity 1 31 0 326 299 34 26 chr11 24406805 24406922 -126376631 - MIR SINE MIR -44 218 101 229 247 0 65 chr11 24406984 24407061 -126376492 + CT-rich Low_complexity Low_complexity 5 76 0 31 44 0 0 chr11 24407363 24407408 -126376145 + AT_rich Low_complexity Low_complexity 1 45 0 25 51 0 0 chr11 24407806 24407845 -126375708 + AT_rich Low_complexity Low_complexity 1 39 0 2017 122 0 56 chr11 24408298 24408617 -126374936 - AluSx SINE Alu -11 301 1 235 360 26 33 chr11 24408794 24408947 -126374606 - MIR SINE MIR -34 228 77 322 358 69 51 chr11 24408949 24409340 -126374213 - MLT1J LTR MaLR -2 509 112 390 21 0 0 chr11 24409492 24409539 -126374014 + (TG)n Simple_repeat Simple_repeat 2 48 0 180 0 0 0 chr11 24409915 24409935 -126373618 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2059 108 0 0 chr11 24409935 24410212 -126373341 - AluSg SINE Alu -33 277 1 21 89 0 0 chr11 24410338 24410394 -126373159 + AT_rich Low_complexity Low_complexity 1 56 0 206 313 45 0 chr11 24410630 24410697 -126372856 + L2 LINE L2 3244 3313 0 230 267 0 0 chr11 24411515 24411575 -126371978 - L1ME1 LINE L1 -67 6099 6040 456 330 94 0 chr11 24412102 24412314 -126371239 + MIR SINE MIR 2 233 -29 351 0 0 0 chr11 24412625 24412664 -126370889 + (TG)n Simple_repeat Simple_repeat 2 40 0 757 236 113 8 chr11 24413030 24413421 -126370132 + L1MC/D LINE L1 5100 5526 -743 738 317 49 13 chr11 24413425 24413816 -126369737 - L1MDa LINE L1 -3394 3146 2742 1743 159 3 14 chr11 24413816 24414147 -126369406 - AluSx SINE Alu 0 328 1 4494 197 70 20 chr11 24414261 24415282 -126368271 - L1MC1 LINE L1 -6 6327 5256 1490 207 13 13 chr11 24415302 24415602 -126367951 - AluJb SINE Alu -8 304 5 353 156 0 0 chr11 24415604 24415668 -126367885 + L1MA5A LINE L1 6228 6291 -6 868 158 39 47 chr11 24415731 24415965 -126367588 - L1MA5A LINE L1 -36 6261 6030 606 272 10 36 chr11 24415961 24416156 -126367397 - L1MC1 LINE L1 -922 5224 5035 * 1015 268 17 22 chr11 24416160 24416537 -126367016 - L1MDa LINE L1 -3932 2608 2235 787 225 109 14 chr11 24416730 24417006 -126366547 - L1MDa LINE L1 -4402 2138 1837 350 250 10 0 chr11 24417006 24417110 -126366443 + (TA)n Simple_repeat Simple_repeat 1 105 0 1453 243 93 47 chr11 24417110 24417139 -126366414 + L1ME2 LINE L1 5291 5317 -847 2529 165 26 4 chr11 24417139 24417631 -126365922 + L1MA4 LINE L1 5793 6295 -5 1453 243 93 47 chr11 24417631 24418238 -126365315 + L1ME2 LINE L1 5317 5956 -208 240 228 0 0 chr11 24418319 24418376 -126365177 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 230 260 0 42 chr11 24418432 24418528 -126365025 - L1MC4 LINE L1 -1338 6704 6613 263 238 0 12 chr11 24418528 24418612 -126364941 + (TA)n Simple_repeat Simple_repeat 2 84 0 256 165 71 24 chr11 24418614 24418699 -126364854 - L1MC4 LINE L1 -1339 6703 6615 228 213 25 38 chr11 24418684 24418764 -126364789 + L1MC3 LINE L1 6569 6647 -1138 * 196 270 10 80 chr11 24419860 24419960 -126363593 + MIR SINE MIR 124 216 -46 258 265 72 0 chr11 24419970 24420053 -126363500 + MIR3 SINE MIR 119 207 -1 21 0 0 0 chr11 24420282 24420303 -126363250 + AT_rich Low_complexity Low_complexity 1 21 0 2041 138 22 40 chr11 24420553 24420924 -126362629 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr11 24420931 24420952 -126362601 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 24421032 24421062 -126362491 + AT_rich Low_complexity Low_complexity 1 30 0 1237 191 4 8 chr11 24421985 24422221 -126361332 + MER46A DNA MER2_type 2 236 0 202 197 70 0 chr11 24422340 24422411 -126361142 + T-rich Low_complexity Low_complexity 4 79 0 3870 77 8 0 chr11 24422411 24422921 -126360632 - L1PA7 LINE L1 -11 6143 5630 231 333 27 0 chr11 24423228 24423303 -126360250 + MIR SINE MIR 80 156 -106 2181 101 10 0 chr11 24423535 24423841 -126359712 - AluY SINE Alu -2 309 1 296 307 186 26 chr11 24426221 24426602 -126356951 - L3 LINE CR1 -40 1537 1096 285 296 87 9 chr11 24426998 24427113 -126356440 + MIR SINE MIR 132 255 -7 2254 110 0 3 chr11 24427337 24427645 -126355908 - AluSc SINE Alu -2 307 1 270 0 0 0 chr11 24427648 24427678 -126355875 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 5591 123 15 2 chr11 24427678 24428815 -126354738 - L1PA14 LINE L1 -9 6152 5002 512 139 0 0 chr11 24428815 24428894 -126354659 - AluJ/FRAM SINE Alu -16 296 218 1841 173 10 0 chr11 24428934 24429235 -126354318 - AluJb SINE Alu -6 306 3 4313 179 73 3 chr11 24429235 24429837 -126353716 - L1PA14 LINE L1 -1127 5019 4334 194 0 0 37 chr11 24429837 24429864 -126353689 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 4313 179 73 3 chr11 24429864 24430149 -126353404 - L1PA14 LINE L1 -1812 4334 4070 377 345 108 48 chr11 24430417 24431011 -126352542 + L2 LINE L2 2684 3313 0 261 0 0 0 chr11 24432335 24432364 -126351189 + (CA)n Simple_repeat Simple_repeat 1 29 0 214 345 0 0 chr11 24433204 24433262 -126350291 - MIR SINE MIR -69 139 82 1283 115 0 0 chr11 24433430 24433612 -126349941 - AluSp SINE Alu -2 311 130 2700 65 3 0 chr11 24433615 24433966 -126349587 - L1PA5 LINE L1 -5 6149 5798 3990 216 12 4 chr11 24434066 24434978 -126348575 + L1PB1 LINE L1 3167 4085 -2061 5395 178 29 5 chr11 24434989 24436812 -126346741 + L1PB1 LINE L1 4295 6150 -1 244 265 98 20 chr11 24436829 24436931 -126346622 + L1MC4a LINE L1 5870 5979 -1829 220 68 23 23 chr11 24436952 24436996 -126346557 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 25 0 0 0 chr11 24437608 24437633 -126345920 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr11 24437987 24438008 -126345545 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 198 0 0 0 chr11 24438330 24438352 -126345201 + (TC)n Simple_repeat Simple_repeat 1 22 0 2301 108 0 0 chr11 24438448 24438754 -126344799 + AluSx SINE Alu 1 306 -6 1962 137 16 10 chr11 24538755 24539061 -126244492 + LTR9 LTR ERV1 305 612 0 3378 116 50 0 chr11 24539448 24539972 -126243581 + MER41A LTR ERV1 5 554 0 273 175 0 0 chr11 24540076 24540139 -126243414 + L1PB3 LINE L1 6092 6154 0 986 193 57 112 chr11 24540367 24540751 -126242802 - MLT1A1 LTR MaLR -2 363 1 244 151 75 0 chr11 24540826 24540879 -126242674 - MLT2B2 LTR ERVL 0 520 464 272 195 0 46 chr11 24540879 24540966 -126242587 + (TA)n Simple_repeat Simple_repeat 1 83 0 845 208 10 58 chr11 24540967 24541174 -126242379 - MLT2B2 LTR ERVL -40 475 279 335 250 21 71 chr11 24541313 24541453 -126242100 - L1MC4 LINE L1 -1274 6768 6636 1241 256 111 33 chr11 24541458 24542398 -126241155 - L1MC4a LINE L1 -1290 6518 5381 1112 141 36 32 chr11 24542642 24542862 -126240691 - HERVH LTR ERV1 -1896 5817 5597 * 4184 139 23 3 chr11 24542859 24543508 -126240045 - HERVH LTR ERV1 -2564 5149 4488 1477 87 0 5 chr11 24543510 24543717 -126239836 - HERVH LTR ERV1 -3720 3993 3788 26 30 0 0 chr11 24544742 24544775 -126238778 + AT_rich Low_complexity Low_complexity 1 33 0 1259 161 0 0 chr11 24545041 24545246 -126238307 + Tigger5 DNA MER2_type 2119 2323 0 328 312 18 0 chr11 24546391 24546500 -126237053 - L2 LINE L2 -9 3304 3194 247 169 39 91 chr11 24547177 24547254 -126236299 - MIR SINE MIR -97 165 93 648 168 127 35 chr11 24548517 24548714 -126234839 - MER114 LTR ERV -60 588 374 2836 244 84 34 chr11 24548716 24549732 -126233821 - L1MEc LINE L1 -5294 1102 36 427 282 77 57 chr11 24549892 24550101 -126233452 - MLT1C LTR MaLR -123 344 132 846 76 68 0 chr11 24550191 24550309 -126233244 - L1PA11 LINE L1 -17 6157 6032 624 242 108 25 chr11 24550369 24550649 -126232904 - L1M4 LINE L1 -2280 3866 3565 22 0 0 0 chr11 24551542 24551564 -126231989 + AT_rich Low_complexity Low_complexity 1 22 0 893 164 15 8 chr11 24551590 24551783 -126231770 - L1MD2 LINE L1 -126 6038 5841 1450 237 40 3 chr11 24551787 24552141 -126231412 + L1MD2 LINE L1 5985 6351 -8 789 212 28 15 chr11 24552383 24552574 -126230979 - MLT1C LTR MaLR 0 490 288 23 33 0 0 chr11 24553121 24553151 -126230402 + AT_rich Low_complexity Low_complexity 1 30 0 268 306 46 40 chr11 24553947 24554293 -126229260 + L1M4 LINE L1 4455 4802 -1344 221 312 91 0 chr11 24555386 24555463 -126228090 + L2 LINE L2 3227 3310 -3 914 97 30 0 chr11 24555536 24555670 -126227883 - AluSg/x SINE Alu -20 290 153 944 130 7 19 chr11 24555680 24555834 -126227719 + AluSg/x SINE Alu 144 295 -17 24 32 0 0 chr11 24556127 24556158 -126227395 + GC_rich Low_complexity Low_complexity 1 31 0 32 0 0 0 chr11 24556169 24556201 -126227352 + GC_rich Low_complexity Low_complexity 1 32 0 1582 123 18 18 chr11 24556867 24557143 -126226410 - AluY SINE Alu 0 311 36 601 158 26 2 chr11 24557973 24558099 -126225454 + THE1-int LTR MaLR 1137 1252 -328 384 0 17 35 chr11 24558325 24558383 -126225170 + (TG)n Simple_repeat Simple_repeat 2 58 0 33 66 0 0 chr11 24558658 24558719 -126224834 + AT_rich Low_complexity Low_complexity 1 61 0 202 358 123 25 chr11 24559115 24559319 -126224234 - L2 LINE L2 0 3313 3090 21 89 0 0 chr11 24559449 24559505 -126224048 + AT_rich Low_complexity Low_complexity 1 56 0 388 143 52 26 chr11 24559651 24559728 -126223825 - MSTA LTR MaLR -349 79 1 4662 181 26 25 chr11 24559736 24561024 -126222529 - L1 LINE L1 -3598 3967 2678 293 196 18 0 chr11 24561608 24561664 -126221889 + L1MD3 LINE L1 6890 6946 -1049 1535 238 52 35 chr11 24561667 24561899 -126221654 + L1MD3 LINE L1 7451 7678 -317 1881 141 3 17 chr11 24561899 24562196 -126221357 + AluSx SINE Alu 1 293 -19 1535 238 52 35 chr11 24562196 24562447 -126221106 + L1MD3 LINE L1 7678 7942 -53 389 264 61 12 chr11 24562445 24562608 -126220945 - L1M4 LINE L1 -957 5189 5019 * 1607 178 7 20 chr11 24563310 24563613 -126219940 + THE1C LTR MaLR 77 375 0 230 276 83 41 chr11 24563629 24563774 -126219779 - L1ME LINE L1 -469 5652 5502 2443 97 59 45 chr11 24563777 24564219 -126219334 + LTR7 LTR ERV1 1 448 -2 1217 170 58 0 chr11 24564292 24564515 -126219038 - AluJb SINE Alu -1 311 76 1668 192 15 0 chr11 24564700 24565033 -126218520 + L1 LINE L1 4699 5036 -1110 6960 113 1 16 chr11 24565371 24566399 -126217154 - HERV9 LTR ERV1 -7027 1372 360 1064 121 7 0 chr11 24566499 24566648 -126216905 - MER41C LTR ERV1 -404 150 1 478 170 11 11 chr11 24566648 24566741 -126216812 - MER4A LTR ERV1 -571 93 1 4794 169 11 8 chr11 24567043 24567909 -126215644 + MER4D LTR ERV1 4 872 0 347 172 35 46 chr11 24568012 24568099 -126215454 - LTR7 LTR ERV1 -2 448 363 1971 166 98 15 chr11 24568508 24568905 -126214648 + MER41C LTR ERV1 125 554 0 1849 151 21 25 chr11 24568936 24569377 -126214176 + MER4A LTR ERV1 90 664 0 216 0 0 0 chr11 24569906 24569930 -126213623 + (A)n Simple_repeat Simple_repeat 1 24 0 212 162 0 0 chr11 24569944 24569981 -126213572 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 266 304 27 54 chr11 24569981 24570093 -126213460 + MIR SINE MIR 40 148 -114 777 185 5 49 chr11 24570294 24570478 -126213075 + pTR5 LTR ERV1 743 918 -1520 2016 108 42 11 chr11 24570635 24570922 -126212631 + AluSq SINE Alu 4 299 -14 244 310 112 0 chr11 24571447 24571563 -126211990 + MIR3 SINE MIR 40 168 -40 236 223 45 9 chr11 24571752 24571864 -126211689 + (TA)n Simple_repeat Simple_repeat 2 117 0 886 181 119 84 chr11 24572043 24572161 -126211392 - LTR49 LTR ERV1 -264 331 219 2215 89 0 7 chr11 24572161 24572454 -126211099 - AluY SINE Alu -20 291 1 886 181 119 84 chr11 24572454 24572655 -126210898 - LTR49 LTR ERV1 -376 219 1 215 148 37 0 chr11 24572681 24572735 -126210818 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 4010 151 12 58 chr11 24572816 24573570 -126209983 - MER4D LTR ERV1 -14 889 173 2779 154 10 50 chr11 24573570 24574088 -126209465 + LOR1a LTR ERV1 1 497 0 4010 151 12 58 chr11 24574088 24574147 -126209406 - MER4D LTR ERV1 -730 173 113 1201 251 65 15 chr11 24574319 24574722 -126208831 - L1M4 LINE L1 -1110 5036 4614 519 296 47 42 chr11 24574915 24575128 -126208425 + MIR SINE MIR 37 250 -12 1683 181 80 92 chr11 24576013 24576515 -126207038 - LTR8 LTR ERV1 -195 496 1 631 135 0 29 chr11 24578278 24578382 -126205171 - L1MA9 LINE L1 -533 5779 5679 * 1775 225 56 24 chr11 24578357 24578854 -126204699 + L1MA9 LINE L1 5762 6274 -38 337 332 104 25 chr11 24578938 24579179 -126204374 - MIR SINE MIR -1 261 2 24 0 0 0 chr11 24579251 24579275 -126204278 + AT_rich Low_complexity Low_complexity 1 24 0 185 300 50 30 chr11 24579361 24579461 -126204092 - MIR SINE MIR -62 146 45 21 36 0 0 chr11 24581229 24581257 -126202296 + AT_rich Low_complexity Low_complexity 1 28 0 1083 263 86 65 chr11 24581927 24582451 -126201102 - MLT1F LTR MaLR -7 535 1 1163 213 11 4 chr11 24583297 24583574 -126199979 - L1M4 LINE L1 -1746 4400 4122 269 271 0 0 chr11 24583560 24583619 -126199934 + MLT1-int LTR MaLR 426 484 -887 * 280 286 135 19 chr11 24583634 24583893 -126199660 + L1ME2 LINE L1 4557 4845 -1301 31 113 0 0 chr11 24583973 24584123 -126199430 + AT_rich Low_complexity Low_complexity 1 150 0 1179 288 86 8 chr11 24584426 24585066 -126198487 + L1ME2 LINE L1 5153 5841 -323 14466 86 4 8 chr11 24585605 24587584 -126195969 - HERV9 LTR ERV1 -3521 4878 2908 22 35 0 0 chr11 24588400 24588429 -126195124 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr11 24588865 24588914 -126194639 + AT_rich Low_complexity Low_complexity 1 49 0 15737 90 18 22 chr11 24589714 24592091 -126191462 + HERVH LTR ERV1 1 2367 -5346 1652 114 30 89 chr11 24592237 24592339 -126191214 - L1MA8 LINE L1 -4 6287 6180 2184 128 0 0 chr11 24592339 24592635 -126190918 + AluSq SINE Alu 1 296 -17 1652 114 30 89 chr11 24592635 24592901 -126190652 - L1MA8 LINE L1 -111 6180 5941 296 258 0 0 chr11 24592903 24592969 -126190584 - MLT1E2 LTR MaLR -435 191 126 1391 215 3 17 chr11 24593057 24593355 -126190198 - AluJb SINE Alu -18 294 1 183 80 0 0 chr11 24593370 24593395 -126190158 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 188 370 0 33 chr11 24594096 24594188 -126189365 + MIR SINE MIR 8 96 -166 200 167 48 0 chr11 24594688 24594730 -126188823 + CT-rich Low_complexity Low_complexity 5 48 0 291 275 0 0 chr11 24595251 24595331 -126188222 - MER116 DNA Mariner 0 80 1 406 302 31 50 chr11 24595905 24596286 -126187267 + HAL1b LINE L1 194 567 -781 318 305 114 32 chr11 24596356 24596697 -126186856 + HAL1b LINE L1 429 797 -551 1084 208 53 7 chr11 24596890 24597193 -126186360 + MER33 DNA MER1_type 7 323 -1 5300 163 42 5 chr11 24597213 24598178 -126185375 - Tigger1 DNA MER2_type -7 2411 1411 5248 155 43 0 chr11 24598196 24599074 -126184479 - Tigger1 DNA MER2_type -1221 1197 282 1067 93 0 0 chr11 24599074 24599213 -126184340 - AluSp/q SINE Alu -12 301 163 227 289 24 0 chr11 24599751 24599834 -126183719 + L1ME LINE L1 2 86 -5984 21 0 0 0 chr11 24599834 24599855 -126183698 + AT_rich Low_complexity Low_complexity 1 21 0 3624 147 15 7 chr11 24600031 24600649 -126182904 + L1PA15 LINE L1 5537 6159 -6 3877 195 31 10 chr11 24600649 24601752 -126181801 - L1P4 LINE L1 -696 5470 4342 319 179 170 6 chr11 24602641 24602782 -126180771 - LTR37B LTR ERV1 0 459 312 22 0 0 0 chr11 24602782 24602804 -126180749 + AT_rich Low_complexity Low_complexity 1 22 0 1929 151 3 0 chr11 24602881 24603173 -126180380 + AluSg SINE Alu 1 293 -17 432 258 60 48 chr11 24603182 24603450 -126180103 - L1MC4a LINE L1 -591 7217 6947 660 247 105 54 chr11 24603461 24603793 -126179760 + L1MC4a LINE L1 7457 7805 -3 363 362 59 0 chr11 24604022 24604174 -126179379 + MIR SINE MIR 78 238 -24 8153 210 24 14 chr11 24604572 24604946 -126178607 - L1 LINE L1 -1916 5649 5280 1992 166 40 0 chr11 24604946 24605296 -126178257 + THE1B LTR MaLR 1 364 0 8153 210 24 14 chr11 24605296 24607305 -126176248 - L1 LINE L1 -2285 5280 3243 387 238 167 66 chr11 24607663 24607890 -126175663 - LTR16C LTR ERVL -160 331 82 290 238 71 56 chr11 24607964 24608090 -126175463 + MER103 DNA DNA 30 157 -9 235 250 0 18 chr11 24608158 24608214 -126175339 - MIR3 SINE MIR -48 160 106 53 78 0 0 chr11 24608439 24608555 -126174998 + AT_rich Low_complexity Low_complexity 1 116 0 4781 142 5 9 chr11 24609041 24609835 -126173718 + L1PA13 LINE L1 5373 6163 0 189 235 157 52 chr11 24610345 24610460 -126173093 - L2 LINE L2 -354 2960 2834 303 386 29 6 chr11 24610471 24610642 -126172911 - L2 LINE L2 -1165 2149 1975 23 54 0 0 chr11 24610782 24610819 -126172734 + AT_rich Low_complexity Low_complexity 1 37 0 262 361 37 0 chr11 24611986 24612094 -126171459 + L2 LINE L2 2866 2977 -295 375 327 83 19 chr11 24612105 24612310 -126171243 + MIR SINE MIR 1 218 -44 1534 84 4 13 chr11 24612490 24612715 -126170838 - pTR5 LTR ERV1 -2044 394 172 311 265 10 0 chr11 24612718 24612816 -126170737 - LTR30 LTR ERV1 -80 642 544 1554 104 82 145 chr11 24612816 24613182 -126170371 - pTR5 LTR ERV1 -413 2025 1683 2166 96 10 23 chr11 24613434 24613737 -126169816 + AluSp SINE Alu 1 299 -14 375 23 0 0 chr11 24613742 24613786 -126169767 + (CA)n Simple_repeat Simple_repeat 2 45 0 277 373 93 30 chr11 24614287 24614523 -126169030 - MIR SINE MIR -8 254 4 429 357 155 14 chr11 24614892 24615189 -126168364 + L3 LINE CR1 1170 1508 -69 270 332 36 79 chr11 24617209 24617462 -126166091 - L3 LINE CR1 -178 1399 1158 1341 207 57 27 chr11 24618308 24618642 -126164911 + THE1C LTR MaLR 32 375 0 4025 161 42 11 chr11 24618660 24619367 -126164186 + THE1C-int LTR MaLR 852 1580 0 1535 191 52 33 chr11 24619369 24619735 -126163818 + THE1C LTR MaLR 3 375 0 21 0 0 0 chr11 24619906 24619927 -126163626 + AT_rich Low_complexity Low_complexity 1 21 0 255 269 96 30 chr11 24620520 24620687 -126162866 - MIR SINE MIR -15 247 70 190 325 32 49 chr11 24621346 24621469 -126162084 - MIR SINE MIR -140 122 2 231 336 42 49 chr11 24623694 24623837 -126159716 - MIR SINE MIR -54 208 67 251 175 18 0 chr11 24625240 24625297 -126158256 + GA-rich Low_complexity Low_complexity 1 58 0 356 307 72 15 chr11 24625809 24626118 -126157435 - L1MEc LINE L1 -4933 1671 1162 203 265 0 0 chr11 24626318 24626367 -126157186 + CT-rich Low_complexity Low_complexity 4 52 0 947 220 164 38 chr11 24626421 24626817 -126156736 - L1MC4 LINE L1 -137 7905 7460 255 292 34 11 chr11 24626867 24626956 -126156597 - LTR16B LTR ERVL -184 280 190 710 170 71 55 chr11 24626966 24627148 -126156405 - MER20 DNA MER1_type -34 185 1 22 56 0 0 chr11 24627361 24627397 -126156156 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr11 24627714 24627756 -126155797 + AT_rich Low_complexity Low_complexity 1 42 0 28 48 0 0 chr11 24627862 24627904 -126155649 + AT_rich Low_complexity Low_complexity 1 42 0 2197 173 34 2 chr11 24629030 24629469 -126154084 - L1MA3 LINE L1 -10 6295 5843 2884 216 27 71 chr11 24629470 24629614 -126153939 - L1M4 LINE L1 -1835 5730 5581 273 29 0 0 chr11 24629614 24629648 -126153905 + (TTCC)n Simple_repeat Simple_repeat 2 35 0 459 0 0 0 chr11 24629656 24629707 -126153846 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2884 216 27 71 chr11 24629707 24630840 -126152713 - L1M4 LINE L1 -1991 5574 4597 1033 91 34 11 chr11 24630842 24631018 -126152535 - AluY SINE Alu -2 309 130 5306 213 33 56 chr11 24631201 24633165 -126150388 - L1M4 LINE L1 -4931 2634 16 1682 235 52 20 chr11 24633224 24633663 -126149890 + LOR1b LTR ERV1 1 453 -8 182 338 91 78 chr11 24633727 24634021 -126149532 + L2 LINE L2 2945 3245 -27 216 0 0 0 chr11 24634021 24634045 -126149508 + (CA)n Simple_repeat Simple_repeat 2 25 0 182 338 91 78 chr11 24634045 24634070 -126149483 + L2 LINE L2 3245 3268 -4 2195 194 31 0 chr11 24634365 24634778 -126148775 - MSTA LTR MaLR -2 426 1 863 251 100 33 chr11 24635310 24635406 -126148147 - Charlie4a DNA MER1_type -1472 489 401 528 154 39 58 chr11 24635406 24635510 -126148043 + U6 snRNA snRNA 2 103 -4 2346 90 0 0 chr11 24635519 24635820 -126147733 - AluY SINE Alu -10 301 1 863 251 100 33 chr11 24635820 24636171 -126147382 - Charlie4a DNA MER1_type -1567 394 1 1293 235 3 17 chr11 24637679 24637867 -126145686 - AluSx SINE Alu -12 300 116 333 0 0 0 chr11 24637867 24637904 -126145649 + (TG)n Simple_repeat Simple_repeat 2 38 0 1293 235 3 17 chr11 24637904 24638017 -126145536 - AluSx SINE Alu -196 116 3 232 258 0 15 chr11 24638386 24638452 -126145101 + T-rich Low_complexity Low_complexity 5 69 0 296 365 37 0 chr11 24638530 24638719 -126144834 - L1ME LINE L1 -390 5731 5536 21 36 0 0 chr11 24639389 24639417 -126144136 + AT_rich Low_complexity Low_complexity 1 28 0 365 229 42 17 chr11 24639576 24639694 -126143859 + L1 LINE L1 4126 4246 -1900 417 149 11 69 chr11 24639707 24639794 -126143759 - MER30 DNA MER1_type -31 199 118 4301 179 59 6 chr11 24639897 24641316 -126142237 + L1PA16 LINE L1 4609 6106 -60 23 78 0 0 chr11 24641353 24641404 -126142149 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr11 24642041 24642063 -126141490 + AT_rich Low_complexity Low_complexity 1 22 0 201 338 29 0 chr11 24642311 24642379 -126141174 + MIR SINE MIR 47 116 -146 245 325 94 8 chr11 24643669 24643786 -126139767 + MIR SINE MIR 2 128 -134 1412 184 8 106 chr11 24643805 24644191 -126139362 - MLT1A1 LTR MaLR -17 348 1 225 269 0 0 chr11 24646564 24646616 -126136937 + T-rich Low_complexity Low_complexity 5 56 0 24 0 0 0 chr11 24647722 24647746 -126135807 + AT_rich Low_complexity Low_complexity 1 24 0 190 309 44 15 chr11 24648101 24648169 -126135384 + L2 LINE L2 2892 2961 -352 3211 180 43 47 chr11 24648297 24649020 -126134533 + LTR8A LTR ERV1 1 720 -7 229 299 47 56 chr11 24649086 24649193 -126134360 + L2 LINE L2 3204 3309 -4 1205 164 66 9 chr11 24649195 24649421 -126134132 + MER2 DNA MER2_type 106 344 -1 593 288 48 48 chr11 24650644 24650873 -126132680 - MIR SINE MIR -27 235 7 457 273 96 43 chr11 24651396 24651605 -126131948 - MIR SINE MIR 0 262 43 615 252 27 141 chr11 24651839 24651913 -126131640 + MER69 DNA AcHobo 512 593 -1933 1787 174 51 8 chr11 24651913 24652269 -126131284 + THE1C LTR MaLR 5 375 0 615 252 27 141 chr11 24652269 24652634 -126130919 + MER69 DNA AcHobo 593 901 -1625 2237 88 0 3 chr11 24652648 24652944 -126130609 + AluY SINE Alu 1 295 -16 422 33 33 0 chr11 24652966 24653026 -126130527 + L1P2 LINE L1 5456 5517 -637 594 267 6 25 chr11 24703174 24703335 -126080218 + MIR SINE MIR 105 262 0 1719 139 164 6 chr11 24703952 24704311 -126079242 + MSTA LTR MaLR 1 416 -12 24 0 0 0 chr11 24705039 24705063 -126078490 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 24705222 24705245 -126078308 + AT_rich Low_complexity Low_complexity 1 23 0 241 318 65 55 chr11 24705294 24705511 -126078042 - MIR SINE MIR -26 236 18 5279 152 20 13 chr11 24705712 24706609 -126076944 + Tigger2 DNA MER2_type 1813 2715 -3 624 194 7 0 chr11 24707205 24707349 -126076204 + L1MA9 LINE L1 6166 6310 -2 1752 187 13 7 chr11 24707371 24707681 -126075872 + AluJb SINE Alu 1 312 0 180 27 81 0 chr11 24709063 24709100 -126074453 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 457 226 0 10 chr11 24709122 24709416 -126074137 + (TA)n Simple_repeat Simple_repeat 1 290 0 217 228 33 11 chr11 24709421 24709513 -126074040 + (TCTA)n Simple_repeat Simple_repeat 2 95 0 1572 121 0 16 chr11 24709592 24709840 -126073713 + L1PA13 LINE L1 5777 6020 -143 362 98 0 0 chr11 24709940 24709991 -126073562 + MSTA LTR MaLR 378 428 0 4829 197 41 18 chr11 24709991 24710474 -126073079 + MSTA-int LTR MaLR 1 471 -1180 2661 23 3 0 chr11 24710474 24710776 -126072777 + AluYa5 SINE Alu 1 303 -8 4829 197 41 18 chr11 24710776 24711292 -126072261 + MSTA-int LTR MaLR 471 1023 -628 232 318 12 12 chr11 24712270 24712355 -126071198 - MIR SINE MIR -110 152 68 424 225 0 0 chr11 24712550 24712621 -126070932 - FRAM SINE Alu -35 141 71 404 228 120 44 chr11 24714250 24714408 -126069145 + L1M4 LINE L1 4092 4261 -1885 2391 191 13 9 chr11 24714528 24714983 -126068570 - MER39B LTR ERV1 -194 459 3 566 270 90 5 chr11 24715463 24715663 -126067890 - L2 LINE L2 -1638 1676 1460 334 307 18 18 chr11 24716601 24716715 -126066838 + MIR3 SINE MIR 64 177 -31 647 297 57 11 chr11 24717212 24717582 -126065971 + L1MEc LINE L1 1693 2079 -4317 279 286 17 25 chr11 24717625 24717744 -126065809 + L1ME1 LINE L1 1646 1763 -4633 2369 265 39 23 chr11 24717769 24718606 -126064947 + L1ME1 LINE L1 5367 6217 -18 771 224 64 113 chr11 24718637 24718800 -126064753 + L1ME1 LINE L1 5792 5961 -205 2852 6 0 0 chr11 24718800 24719111 -126064442 + AluYa5 SINE Alu 1 311 0 771 224 64 113 chr11 24719111 24719336 -126064217 + L1ME1 LINE L1 5961 6161 -5 792 102 81 1 chr11 24719574 24719709 -126063844 + THE1C LTR MaLR 200 407 -25 22 35 0 0 chr11 24719827 24719856 -126063697 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr11 24720389 24720424 -126063129 + AT_rich Low_complexity Low_complexity 1 35 0 2065 138 127 21 chr11 24720859 24721195 -126062358 + MSTA LTR MaLR 3 387 -41 2241 111 80 9 chr11 24721195 24721545 -126062008 + THE1C LTR MaLR 1 375 0 2065 138 127 21 chr11 24721545 24721593 -126061960 + MSTA LTR MaLR 387 428 0 567 115 0 0 chr11 24721608 24721686 -126061867 - THE1B LTR MaLR 0 364 287 3034 103 20 5 chr11 24721690 24722128 -126061425 - MLT2A2 LTR ERVL -8 445 1 1901 121 10 30 chr11 24722128 24722425 -126061128 - THE1B LTR MaLR -73 291 1 7696 175 162 7 chr11 24722425 24723791 -126059762 - THE1B-int LTR MaLR 0 1580 3 355 122 0 0 chr11 24723795 24723844 -126059709 - THE1B LTR MaLR -2 353 305 1038 228 0 0 chr11 24723844 24724033 -126059520 + L1PA12 LINE L1 1304 1492 -6089 427 167 0 13 chr11 24724036 24724114 -126059439 + MER30 DNA MER1_type 115 191 -39 553 319 0 0 chr11 24724131 24724297 -126059256 + L1PA12 LINE L1 1 166 -7415 5012 241 19 17 chr11 24724326 24725723 -126057830 + L1PA12 LINE L1 2301 3700 -3884 414 206 59 10 chr11 24726850 24726952 -126056601 + MLT1D LTR MaLR 3 109 -396 377 286 16 56 chr11 24727026 24727152 -126056401 - L2 LINE L2 0 3313 3193 233 318 73 47 chr11 24727292 24727484 -126056069 - L2 LINE L2 0 3313 3117 1156 310 74 27 chr11 24727599 24728264 -126055289 - L2 LINE L2 -299 3014 2231 555 348 61 51 chr11 24728325 24728697 -126054856 - L2 LINE L2 -276 3037 2658 280 174 0 0 chr11 24728821 24728867 -126054686 + MER52C LTR ERV1 427 472 -806 * 2469 115 211 41 chr11 24728866 24729378 -126054175 + MER52C LTR ERV1 680 1278 0 315 0 0 0 chr11 24729447 24729482 -126054071 + (TC)n Simple_repeat Simple_repeat 2 36 0 519 311 34 24 chr11 24729786 24729992 -126053561 + MLT1J2 LTR MaLR 1 208 -242 330 220 77 22 chr11 24730317 24730408 -126053145 + Zaphod DNA AcHobo 3935 4030 -1 517 297 55 31 chr11 24730899 24731447 -126052106 + L1MCc LINE L1 1354 1917 -4957 184 75 25 25 chr11 24731495 24731535 -126052018 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 424 290 15 7 chr11 24731550 24731730 -126051823 + L1M4 LINE L1 5567 5748 -414 357 93 0 0 chr11 24731829 24731883 -126051670 + (CA)n Simple_repeat Simple_repeat 1 54 0 303 301 91 6 chr11 24731897 24732073 -126051480 + L1MCc LINE L1 2089 2279 -4662 3130 186 35 17 chr11 24732174 24732776 -126050777 + MSTB-int LTR MaLR 1039 1651 0 1846 195 74 2 chr11 24732776 24733170 -126050383 + MSTB LTR MaLR 1 422 -4 2106 147 15 27 chr11 24733173 24733581 -126049972 + L1MA6 LINE L1 5898 6300 0 3071 219 69 21 chr11 24733643 24734668 -126048885 + L1MB7 LINE L1 5108 6184 0 21 0 0 0 chr11 24735101 24735122 -126048431 + AT_rich Low_complexity Low_complexity 1 21 0 314 258 41 0 chr11 24735823 24735920 -126047633 - L1M4 LINE L1 -2241 3905 3805 1069 231 30 7 chr11 24735947 24736216 -126047337 + MLT1D LTR MaLR 227 501 -4 1519 192 21 10 chr11 24736223 24736514 -126047039 + AluJo SINE Alu 1 294 -18 204 217 0 0 chr11 24737536 24737582 -126045971 + (CA)n Simple_repeat Simple_repeat 1 46 0 22 35 0 0 chr11 24737733 24737762 -126045791 + AT_rich Low_complexity Low_complexity 1 29 0 6265 168 21 15 chr11 24739811 24741901 -126041652 - L1PA8A LINE L1 -2 6129 4122 10501 166 5 9 chr11 24741901 24742241 -126041312 + L1P LINE L1 2100 2440 -3706 2353 81 0 7 chr11 24742241 24742539 -126041014 + AluY SINE Alu 1 296 -15 10501 166 5 9 chr11 24742539 24744137 -126039416 + L1P LINE L1 2440 4029 -2117 737 78 0 142 chr11 24744237 24744378 -126039175 + L1P LINE L1 4004 4124 -2022 2712 168 31 4 chr11 24744402 24744945 -126038608 - L1MA4 LINE L1 -6 6294 5737 3099 118 28 2 chr11 24744945 24745418 -126038135 + LTR15 LTR ERV1 3 487 -6 715 185 0 8 chr11 24745424 24745554 -126037999 - L1MA4 LINE L1 -558 5742 5614 * 1478 228 31 10 chr11 24745552 24745968 -126037585 + L1 LINE L1 4920 5344 -802 1694 162 33 12 chr11 24745969 24746303 -126037250 + L1M1 LINE L1 5282 5622 -678 23 78 0 0 chr11 24746529 24746580 -126036973 + AT_rich Low_complexity Low_complexity 1 51 0 1267 189 158 25 chr11 24746960 24747282 -126036271 - MLT1A1 LTR MaLR 0 365 1 2152 120 0 16 chr11 24747852 24748160 -126035393 + AluSq SINE Alu 1 303 -10 181 265 41 0 chr11 24749386 24749435 -126034118 - L2 LINE L2 -337 2976 2926 7569 172 11 30 chr11 24749584 24751605 -126031948 - L1PA8A LINE L1 -178 5953 3982 3486 181 15 1 chr11 24751603 24752277 -126031276 - L1PA8A LINE L1 -2924 3222 2540 * 618 282 110 22 chr11 24752439 24752712 -126030841 - LTR16C LTR ERVL -8 483 187 2568 137 5 27 chr11 24752988 24753426 -126030127 + MSTA LTR MaLR 1 428 0 27 87 0 0 chr11 24753606 24753675 -126029878 + AT_rich Low_complexity Low_complexity 1 69 0 895 236 144 31 chr11 24753820 24754147 -126029406 - MLT1E1 LTR MaLR -290 364 1 226 300 22 22 chr11 24754358 24754448 -126029105 - L2 LINE L2 0 3313 3224 312 219 0 0 chr11 24754969 24755042 -126028511 - MER4C LTR ERV1 -116 349 277 2330 91 49 104 chr11 24755058 24755508 -126028045 - MER4A LTR ERV1 -239 425 1 23 54 0 0 chr11 24755658 24755695 -126027858 + AT_rich Low_complexity Low_complexity 1 37 0 221 372 23 0 chr11 24756240 24756326 -126027227 + L2 LINE L2 3224 3311 -2 240 314 137 8 chr11 24756959 24757083 -126026470 - MIR3 SINE MIR -10 198 59 1734 46 5 0 chr11 24757818 24758037 -126025516 + L1PA4 LINE L1 5933 6152 -3 207 349 101 7 chr11 24758635 24758784 -126024769 + MIR SINE MIR 22 184 -78 1722 188 7 3 chr11 24759502 24759795 -126023758 - AluJb SINE Alu -18 294 1 1721 288 58 32 chr11 24759838 24760201 -126023352 - L1M4 LINE L1 -1677 4469 4117 2049 102 7 4 chr11 24760201 24760476 -126023077 + AluSq SINE Alu 31 306 -7 1721 288 58 32 chr11 24760476 24761084 -126022469 - L1M4 LINE L1 -2029 4117 3473 825 235 50 16 chr11 24761160 24761459 -126022094 + MLT2B1 LTR ERVL 1 351 -46 180 77 0 0 chr11 24761459 24761485 -126022068 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 825 235 50 16 chr11 24761485 24761517 -126022036 + MLT2B1 LTR ERVL 351 380 -17 4480 145 50 3 chr11 24763204 24763976 -126019577 + L1PB4 LINE L1 5336 6144 -12 940 257 127 51 chr11 24764580 24765069 -126018484 + MLT1E3 LTR MaLR 52 596 -28 21 36 0 0 chr11 24765724 24765752 -126017801 + AT_rich Low_complexity Low_complexity 1 28 0 5810 117 22 7 chr11 24765752 24767048 -126016505 - L1PA14 LINE L1 -2 6159 4850 533 262 82 19 chr11 24767572 24767778 -126015775 + L1ME2 LINE L1 5924 6142 -22 243 0 0 0 chr11 24767996 24768023 -126015530 + (TA)n Simple_repeat Simple_repeat 1 27 0 1362 203 0 19 chr11 24768082 24768343 -126015210 + AluJo SINE Alu 1 256 -56 479 291 37 53 chr11 24768639 24768828 -126014725 - MIR SINE MIR -34 228 43 544 287 116 36 chr11 24770382 24770633 -126012920 - L2 LINE L2 -18 3295 3025 248 353 173 0 chr11 24771438 24771571 -126011982 + L2 LINE L2 3112 3267 -5 11505 279 42 29 chr11 24772133 24775470 -126008083 + L1PA12 LINE L1 1536 4828 -2756 1731 131 16 72 chr11 24775470 24775790 -126007763 + AluSx SINE Alu 1 302 -10 11505 279 42 29 chr11 24775790 24776743 -126006810 + L1PA12 LINE L1 4828 5767 -1817 2253 152 6 3 chr11 24776743 24777104 -126006449 - THE1B LTR MaLR 0 364 3 9676 118 35 32 chr11 24777106 24778682 -126004871 - THE1B-int LTR MaLR 0 1580 1 2347 141 6 0 chr11 24778682 24779044 -126004509 - THE1B LTR MaLR 0 364 1 11505 279 42 29 chr11 24779044 24779985 -126003568 + L1PA12 LINE L1 5766 6785 -799 998 283 55 19 chr11 24780038 24780451 -126003102 + L1M4 LINE L1 4545 4978 -1168 2122 131 57 20 chr11 24780451 24780802 -126002751 + THE1B LTR MaLR 1 364 0 998 283 55 19 chr11 24780802 24780858 -126002695 + L1M4 LINE L1 4978 5031 -1115 3447 175 11 21 chr11 24780948 24781662 -126001891 + L1MB3 LINE L1 5476 6182 -1 482 287 57 14 chr11 24781674 24781953 -126001600 + L1M4 LINE L1 5016 5306 -840 1282 278 65 15 chr11 24782004 24782407 -126001146 + MLT2F LTR ERVL 178 600 -63 285 323 32 0 chr11 24783328 24783421 -126000132 + MIR SINE MIR 45 140 -68 2124 112 3 0 chr11 24784540 24784835 -125998718 + AluSg SINE Alu 1 296 -14 482 160 0 0 chr11 24784917 24784992 -125998561 + AluJ/FLAM SINE Alu 1 75 -237 305 317 0 30 chr11 24785284 24785385 -125998168 + MLT1F LTR MaLR 86 183 -407 513 228 88 18 chr11 24785510 24785681 -125997872 + MLT1F LTR MaLR 354 536 -6 231 383 13 13 chr11 24785688 24785837 -125997716 + MLT1F-int LTR MaLR 2 150 -1221 375 335 34 38 chr11 24785838 24786101 -125997452 + MLT1F-int LTR MaLR 299 560 -811 2133 81 57 7 chr11 24786221 24786517 -125997036 + AluY SINE Alu 1 311 0 634 162 43 0 chr11 24787156 24787273 -125996280 - L1 LINE L1 -1335 4811 4690 610 114 0 0 chr11 24787342 24787430 -125996123 + L1M2 LINE L1 5641 5728 -572 2062 128 3 0 chr11 24787673 24787963 -125995590 - AluSx SINE Alu -1 311 21 21 89 0 0 chr11 24788664 24788720 -125994833 + AT_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr11 24790470 24790502 -125993051 + AT_rich Low_complexity Low_complexity 1 32 0 9955 181 52 23 chr11 24790536 24792644 -125990909 + L1M4c LINE L1 15 2184 -4200 797 198 19 53 chr11 24792646 24792853 -125990700 + MLT1A1 LTR MaLR 1 200 -165 189 74 0 0 chr11 24793015 24793042 -125990511 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1944 170 123 8 chr11 24793149 24793532 -125990021 - MSTA LTR MaLR 0 428 2 312 324 73 22 chr11 24793807 24793943 -125989610 + MIR SINE MIR 34 176 -86 540 206 42 32 chr11 24794582 24794771 -125988782 + HsTC2 DNA Tc2 1598 1788 -110 21 0 0 0 chr11 24796075 24796096 -125987457 + AT_rich Low_complexity Low_complexity 1 21 0 1639 157 27 7 chr11 24796676 24796975 -125986578 + L1PA16 LINE L1 5861 6165 -1 208 258 140 43 chr11 24797308 24797401 -125986152 - L3 LINE CR1 -116 1461 1360 1449 215 37 17 chr11 24797655 24798009 -125985544 + MLT1A1 LTR MaLR 1 365 0 305 287 44 59 chr11 24798776 24799036 -125984517 + MIR SINE MIR 26 237 -25 189 74 0 0 chr11 24799227 24799254 -125984299 + (CA)n Simple_repeat Simple_repeat 2 28 0 1228 206 60 122 chr11 24799489 24800023 -125983530 - MER67D LTR ERV1 -8 506 6 231 295 95 21 chr11 24800086 24800181 -125983372 + MIR SINE MIR 88 189 -73 24 0 0 0 chr11 24800572 24800596 -125982957 + AT_rich Low_complexity Low_complexity 1 24 0 899 251 172 39 chr11 24801470 24801912 -125981641 + MLT1D LTR MaLR 5 505 0 1413 121 24 0 chr11 24802631 24802837 -125980716 - AluSx SINE Alu -101 211 1 22 0 7 0 chr11 24802846 24802901 -125980652 + AT_rich Low_complexity Low_complexity 1 22 0 323 300 65 33 chr11 24803726 24804156 -125979397 + L1MEc LINE L1 1041 1484 -4912 309 118 0 0 chr11 24804205 24804256 -125979297 + Alu SINE Alu 251 301 0 324 229 14 0 chr11 24805010 24805080 -125978473 - MIR SINE MIR -110 152 82 1798 144 25 0 chr11 24805084 24805419 -125978134 + AluSx SINE Alu 1 342 0 196 235 78 0 chr11 24805466 24805517 -125978036 - MIR SINE MIR -21 241 187 1783 236 51 73 chr11 24806300 24806969 -125976584 + MLT1E1 LTR MaLR 1 654 0 2240 103 17 0 chr11 24807114 24807415 -125976138 - AluSq SINE Alu -7 306 1 204 40 0 0 chr11 24807560 24807585 -125975968 + (TG)n Simple_repeat Simple_repeat 1 25 0 414 304 83 35 chr11 24807634 24808046 -125975507 - L1M4 LINE L1 -2202 3944 3486 1783 117 4 8 chr11 24808046 24808311 -125975242 + AluSx SINE Alu 36 299 -13 414 304 83 35 chr11 24808311 24808363 -125975190 - L1M4 LINE L1 -2660 3486 3438 1487 271 110 34 chr11 24808646 24809012 -125974541 + L1ME3A LINE L1 5255 5592 -578 387 0 0 0 chr11 24809012 24809055 -125974498 + (CA)n Simple_repeat Simple_repeat 1 43 0 1487 271 110 34 chr11 24809055 24809258 -125974295 + L1ME3A LINE L1 5592 5778 -392 2234 139 104 28 chr11 24809258 24809690 -125973863 - MER4C LTR ERV1 0 465 1 1487 271 110 34 chr11 24809690 24809945 -125973608 + L1ME3A LINE L1 5778 6143 -27 423 237 82 55 chr11 24809971 24810190 -125973363 + L1M4 LINE L1 2964 3188 -2958 1602 147 8 4 chr11 24813095 24813353 -125970200 + AluSx SINE Alu 42 300 -12 21 0 0 0 chr11 24813749 24813770 -125969783 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr11 24813853 24813888 -125969665 + AT_rich Low_complexity Low_complexity 1 35 0 1685 238 143 5 chr11 24813892 24814312 -125969241 - MER66A LTR ERV1 0 478 1 213 380 0 28 chr11 24814932 24815040 -125968513 - L2 LINE L2 -17 3255 3151 322 280 233 27 chr11 24815323 24815473 -125968080 - MER5A DNA MER1_type 0 189 9 208 318 0 0 chr11 24815550 24815594 -125967959 + L2 LINE L2 3221 3264 -8 2203 89 0 26 chr11 24816474 24816802 -125966751 - AluY SINE Alu 0 311 1 2731 67 13 0 chr11 24817751 24818142 -125965411 - L1PA5 LINE L1 -2717 3429 3034 15360 43 14 2 chr11 24818142 24820831 -125962722 + L1PA5 LINE L1 3432 6140 -14 3617 59 8 4 chr11 24820931 24821407 -125962146 + L1PA5 LINE L1 5671 6148 -6 423 0 0 0 chr11 24821519 24821566 -125961987 + (CA)n Simple_repeat Simple_repeat 2 48 0 557 168 0 0 chr11 24821638 24821739 -125961814 + L1MA9 LINE L1 6176 6276 -36 25 31 0 0 chr11 24822050 24822082 -125961471 + AT_rich Low_complexity Low_complexity 1 32 0 225 278 0 0 chr11 24822102 24822156 -125961397 + MLT1J2 LTR MaLR 394 447 -3 223 263 12 62 chr11 24823042 24823122 -125960431 + L3b LINE CR1 1504 1579 -4 2362 117 5 48 chr11 24823320 24823714 -125959839 - MER51B LTR ERV1 0 377 1 1363 104 9 28 chr11 24824410 24824622 -125958931 - AluSg/x SINE Alu -10 302 95 1813 181 95 53 chr11 24826684 24826750 -125956803 + LTR38 LTR ERV1 107 169 -387 2205 109 6 10 chr11 24826750 24827062 -125956491 + AluSx SINE Alu 1 311 -1 1813 181 95 53 chr11 24827062 24827427 -125956126 + LTR38 LTR ERV1 169 556 0 293 303 43 32 chr11 24829593 24829781 -125953772 - HAL1 LINE L1 -1160 1347 1158 281 250 75 17 chr11 24829760 24829880 -125953673 - HAL1 LINE L1 -2324 183 57 * 262 333 30 71 chr11 24830174 24830342 -125953211 - L3 LINE CR1 -297 1280 1120 181 176 0 0 chr11 24830594 24830628 -125952925 - L3 LINE CR1 -876 701 668 666 271 114 50 chr11 24832285 24832866 -125950687 + L1ME LINE L1 5052 5671 -499 881 353 61 31 chr11 24832942 24833866 -125949687 + ERVL LTR ERVL 4140 5112 -652 624 308 31 81 chr11 24834328 24834747 -125948806 + LTR16A1 LTR ERVL 60 457 0 405 257 18 9 chr11 24834749 24834858 -125948695 + L1ME3A LINE L1 5616 5725 -445 1400 298 41 34 chr11 24834872 24835463 -125948090 + MLT1G1 LTR MaLR 1 595 0 485 255 150 24 chr11 24835506 24835753 -125947800 + L1ME3A LINE L1 5845 6122 -48 25 31 0 0 chr11 24835976 24836008 -125947545 + AT_rich Low_complexity Low_complexity 1 32 0 1020 230 34 4 chr11 24836788 24837150 -125946403 - MER67C LTR ERV1 -62 648 220 296 406 22 0 chr11 24837782 24837920 -125945633 + MIR SINE MIR 1 141 -121 197 250 75 25 chr11 24838311 24838391 -125945162 - MIR3 SINE MIR -1 207 124 381 273 36 29 chr11 24839500 24839639 -125943914 + LTR41 LTR ERVL 1 140 -633 530 169 49 49 chr11 24839981 24840123 -125943430 + LTR41 LTR ERVL 625 766 -7 819 284 34 29 chr11 24840199 24840438 -125943115 + MIR SINE MIR 18 257 -5 192 200 0 25 chr11 24840554 24840594 -125942959 + L2 LINE L2 3017 3055 -217 247 380 20 27 chr11 24842981 24843131 -125940422 - L2 LINE L2 -220 3052 2904 3446 170 36 68 chr11 24843351 24844185 -125939368 - L1MB1 LINE L1 -5 6163 5357 990 217 21 0 chr11 24844186 24844421 -125939132 + L1MB1 LINE L1 5112 5351 -795 23 0 0 0 chr11 24844430 24844453 -125939100 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr11 24844706 24844735 -125938818 + AT_rich Low_complexity Low_complexity 1 29 0 265 276 0 0 chr11 24845557 24845615 -125937938 + CT-rich Low_complexity Low_complexity 3 60 0 303 175 0 0 chr11 24845744 24845801 -125937752 + (TA)n Simple_repeat Simple_repeat 1 57 0 669 279 100 24 chr11 24846855 24847337 -125936216 - MLT1G1 LTR MaLR -2 593 3 234 314 41 8 chr11 24848213 24848334 -125935219 + MER94 DNA DNA 1 125 -9 12261 225 56 14 chr11 24848334 24853565 -125929988 + L1PA16 LINE L1 6 5423 -1426 1569 143 55 78 chr11 24853565 24853949 -125929604 + THE1C LTR MaLR 1 375 0 8537 148 82 8 chr11 24853949 24855420 -125928133 + THE1C-int LTR MaLR 1 1580 0 1609 133 52 75 chr11 24855420 24855804 -125927749 + THE1C LTR MaLR 1 375 0 2601 199 48 20 chr11 24855815 24856841 -125926712 + L1PA16 LINE L1 5431 6477 -392 1672 159 0 16 chr11 24856842 24857156 -125926397 + L1PA16 LINE L1 6561 6869 0 218 363 12 0 chr11 24857394 24857474 -125926079 + L2 LINE L2 3228 3308 -5 25 0 0 0 chr11 24857772 24857797 -125925756 + AT_rich Low_complexity Low_complexity 1 25 0 227 139 0 0 chr11 24857816 24857852 -125925701 - MLT1I LTR MaLR 0 409 374 1038 257 62 35 chr11 24858048 24858449 -125925104 - MLT1C LTR MaLR -3 464 53 189 0 0 0 chr11 24859033 24859054 -125924499 + (T)n Simple_repeat Simple_repeat 1 21 0 471 313 33 11 chr11 24859064 24859246 -125924307 - LTR16A1 LTR ERVL -5 452 267 260 286 0 0 chr11 24859768 24859845 -125923708 + A-rich Low_complexity Low_complexity 1 77 0 21 57 0 0 chr11 24860291 24860326 -125923227 + AT_rich Low_complexity Low_complexity 1 35 0 365 277 47 34 chr11 24861882 24862030 -125921523 - L1MC4 LINE L1 -1197 6845 6696 2602 230 38 35 chr11 24864259 24865023 -125918530 + L1MA9 LINE L1 5438 6203 -109 832 190 56 11 chr11 24865030 24865209 -125918344 - MER46A DNA MER2_type 0 236 50 793 254 6 0 chr11 24865213 24865386 -125918167 + FAM SINE Alu 2 175 0 603 222 0 22 chr11 24865386 24865521 -125918032 + FLAM_C SINE Alu 2 133 0 422 143 0 0 chr11 24865555 24865618 -125917935 - MER46A DNA MER2_type -173 63 1 276 227 0 0 chr11 24865618 24865684 -125917869 + L1MA9 LINE L1 6209 6274 -38 269 230 70 10 chr11 24865703 24865803 -125917750 + L1M4 LINE L1 4633 4738 -1408 779 148 5 56 chr11 24865850 24866046 -125917507 + L1MA4 LINE L1 6096 6281 -19 25 31 0 0 chr11 24866052 24866084 -125917469 + AT_rich Low_complexity Low_complexity 1 32 0 433 143 0 44 chr11 24866098 24866189 -125917364 + L1MA2 LINE L1 6218 6304 0 977 265 67 17 chr11 24866215 24866676 -125916877 + L1M4 LINE L1 4783 5266 -880 321 294 142 50 chr11 24867393 24867611 -125915942 - MIR SINE MIR -10 252 15 26 30 0 0 chr11 24867803 24867836 -125915717 + AT_rich Low_complexity Low_complexity 1 33 0 1859 144 13 7 chr11 24868988 24869287 -125914266 - AluSx SINE Alu -11 301 1 22 0 0 0 chr11 24870058 24870080 -125913473 + AT_rich Low_complexity Low_complexity 1 22 0 297 356 34 34 chr11 24870158 24870307 -125913246 + MIR3 SINE MIR 33 181 -27 203 231 44 33 chr11 24870339 24870430 -125913123 + CT-rich Low_complexity Low_complexity 3 94 0 227 196 65 0 chr11 24871465 24871511 -125912042 + L2 LINE L2 3263 3311 -2 1840 147 32 0 chr11 24871884 24872169 -125911384 - AluSx SINE Alu -18 294 1 22 0 0 0 chr11 24872255 24872277 -125911276 + AT_rich Low_complexity Low_complexity 1 22 0 6699 36 1 0 chr11 24873780 24874584 -125908969 - L1PA3 LINE L1 -1432 4714 3910 7261 36 10 0 chr11 24874585 24876015 -125907538 + L1PA3 LINE L1 4714 6152 -3 645 227 0 23 chr11 24876081 24876213 -125907340 + FLAM_C SINE Alu 1 129 -4 273 204 20 20 chr11 24876218 24876316 -125907237 + A-rich Low_complexity Low_complexity 3 100 0 249 171 0 0 chr11 24876316 24876357 -125907196 + GA-rich Low_complexity Low_complexity 4 44 0 851 76 0 78 chr11 24876358 24876751 -125906802 + (GGAA)n Simple_repeat Simple_repeat 1 362 0 572 173 218 8 chr11 24876772 24876905 -125906648 + FAM SINE Alu 6 166 -19 23 54 0 0 chr11 24877025 24877062 -125906491 + AT_rich Low_complexity Low_complexity 1 37 0 531 296 16 21 chr11 24877276 24877465 -125906088 - MIR SINE MIR -11 251 64 733 344 121 24 chr11 24877739 24878630 -125904923 - L2 LINE L2 -33 3280 2329 752 217 56 17 chr11 24879158 24879338 -125904215 - MLT1B LTR MaLR -3 387 201 700 341 79 36 chr11 24879732 24880148 -125903405 + L3 LINE CR1 1130 1563 -14 2242 127 16 50 chr11 24881006 24881383 -125902170 - THE1B LTR MaLR 0 364 1 9283 139 11 61 chr11 24881383 24883046 -125900507 - THE1B-int LTR MaLR 0 1580 1 2202 148 22 6 chr11 24883046 24883404 -125900149 - THE1B LTR MaLR 0 364 1 272 337 56 32 chr11 24883832 24884401 -125899152 - L1M4 LINE L1 -1821 4325 3743 384 288 82 17 chr11 24884416 24884649 -125898904 - L1M4 LINE L1 -2984 3162 2915 338 349 136 44 chr11 24885232 24885665 -125897888 + L2 LINE L2 2836 3308 -5 625 290 6 0 chr11 24886358 24886534 -125897019 + MSTD LTR MaLR 1 177 -219 8524 207 27 38 chr11 24886542 24887398 -125896155 - L1PB4 LINE L1 -5 6151 5287 863 90 0 15 chr11 24887398 24887531 -125896022 - L1PA13 LINE L1 -1 6162 6032 8524 207 27 38 chr11 24887531 24888866 -125894687 - L1PB4 LINE L1 -869 5287 3939 4906 96 133 0 chr11 24888866 24889595 -125893958 + LTR12 LTR ERV1 1 826 0 8524 207 27 38 chr11 24889595 24889963 -125893590 - L1PB4 LINE L1 -2217 3939 3568 383 62 31 0 chr11 24889963 24890027 -125893526 + L1PB2 LINE L1 6086 6151 0 8524 207 27 38 chr11 24890027 24890041 -125893512 - L1PB4 LINE L1 -2588 3568 3555 767 238 6 24 chr11 24890041 24890209 -125893344 + FRAM SINE Alu 1 165 -1 8524 207 27 38 chr11 24890209 24890927 -125892626 - L1PB4 LINE L1 -2601 3555 2903 31 0 0 0 chr11 24891477 24891508 -125892045 + AT_rich Low_complexity Low_complexity 1 31 0 236 330 55 0 chr11 24891558 24891674 -125891879 + MIR SINE MIR 36 157 -51 22 35 0 0 chr11 24893050 24893079 -125890474 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr11 24893205 24893241 -125890312 + AT_rich Low_complexity Low_complexity 1 36 0 1588 205 27 67 chr11 24893426 24893831 -125889722 - MLT1B LTR MaLR 0 390 2 1142 150 0 0 chr11 24894322 24894495 -125889058 - AluSg/x SINE Alu -2 310 138 303 93 0 0 chr11 24894639 24894682 -125888871 + (T)n Simple_repeat Simple_repeat 1 43 0 200 233 17 0 chr11 24895249 24895309 -125888244 + (TA)n Simple_repeat Simple_repeat 1 61 0 2146 123 0 0 chr11 24896684 24896977 -125886576 + AluSc SINE Alu 3 295 -14 22 35 0 0 chr11 24897383 24897412 -125886141 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr11 24898667 24898696 -125884857 + AT_rich Low_complexity Low_complexity 1 29 0 504 294 46 42 chr11 24898698 24899290 -125884263 - L1ME3A LINE L1 -135 6035 5294 22 0 0 0 chr11 24899912 24899934 -125883619 + AT_rich Low_complexity Low_complexity 1 22 0 326 285 65 8 chr11 24900017 24900140 -125883413 + MIR SINE MIR 71 200 -62 607 311 63 8 chr11 24902135 24902373 -125881180 + MIR SINE MIR 12 262 0 4212 212 28 27 chr11 24902844 24904301 -125879252 - L1P4 LINE L1 -489 6327 4879 * 4265 281 33 39 chr11 24904285 24905024 -125878529 - L1P4 LINE L1 -2782 4015 3273 2186 145 71 22 chr11 24905024 24905229 -125878324 + MSTA LTR MaLR 1 195 -233 243 0 0 0 chr11 24905229 24905256 -125878297 + (TC)n Simple_repeat Simple_repeat 1 27 0 2186 145 71 22 chr11 24905256 24905458 -125878095 + MSTA LTR MaLR 195 428 0 4265 281 33 39 chr11 24905458 24906239 -125877314 - L1P4 LINE L1 -3524 3273 2489 1923 81 97 4 chr11 24906239 24906537 -125877016 - AluY SINE Alu 0 322 1 4265 281 33 39 chr11 24906537 24908363 -125875190 - L1P4 LINE L1 -4308 2489 2 348 242 172 0 chr11 24908363 24908462 -125875091 - MLT1A2 LTR MaLR -244 130 15 376 172 11 0 chr11 24908559 24908646 -125874907 - L1ME3A LINE L1 -1096 5050 4963 446 0 19 0 chr11 24909060 24909114 -125874439 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1512 28 6 0 chr11 24909395 24909574 -125873979 + AluY SINE Alu 128 307 -4 1143 253 118 45 chr11 24909587 24910054 -125873499 + MLT1D LTR MaLR 5 505 0 188 400 0 0 chr11 24910329 24910409 -125873144 - MER5B DNA MER1_type -98 80 1 1106 324 47 50 chr11 24911745 24912844 -125870709 + L1PA16 LINE L1 8 2183 -5398 12256 240 36 26 chr11 24913077 24916902 -125866651 + L1PA16 LINE L1 2182 5969 -1635 1966 205 43 80 chr11 24916902 24917477 -125866076 + MLT2B3 LTR ERVL 1 554 0 12256 240 36 26 chr11 24917477 24918432 -125865121 + L1PA16 LINE L1 5969 7035 -569 1918 104 11 3 chr11 24918432 24918719 -125864834 - AluSq SINE Alu -24 289 1 12256 240 36 26 chr11 24918719 24919285 -125864268 + L1PA16 LINE L1 7035 7594 -10 370 77 0 0 chr11 24919553 24919605 -125863948 - L1PA6 LINE L1 0 6154 6103 273 282 14 0 chr11 24919605 24919676 -125863877 + MER94 DNA DNA 7 78 -56 220 348 170 4 chr11 24919902 24920155 -125863398 + L2 LINE L2 3019 3313 0 397 192 39 15 chr11 24921358 24921488 -125862065 + CT-rich Low_complexity Low_complexity 4 136 0 22 0 0 0 chr11 24922072 24922094 -125861459 + AT_rich Low_complexity Low_complexity 1 22 0 297 324 35 21 chr11 24922375 24922517 -125861036 - MIR SINE MIR -26 236 93 1219 298 86 19 chr11 24923268 24923417 -125860136 - L1ME3A LINE L1 -9 6161 6023 2027 101 18 0 chr11 24923417 24923694 -125859859 + AluSx SINE Alu 1 320 0 237 53 26 0 chr11 24923694 24923732 -125859821 + (CAAAA)n Simple_repeat Simple_repeat 5 180 0 1219 298 86 19 chr11 24923732 24924149 -125859404 - L1ME3A LINE L1 -147 6023 5556 406 244 30 59 chr11 24924284 24924419 -125859134 - L1MDa LINE L1 -6328 212 82 21 0 0 0 chr11 24924811 24924832 -125858721 + AT_rich Low_complexity Low_complexity 1 21 0 13592 35 2 5 chr11 24925479 24927201 -125856352 - L1P LINE L1 -2440 3706 1990 1304 221 63 20 chr11 24927846 24928224 -125855329 - MLT1B LTR MaLR 0 390 4 257 340 31 10 chr11 24928262 24928359 -125855194 - L2 LINE L2 -6 3266 3168 1619 285 105 31 chr11 24929030 24930208 -125853345 - L1ME2 LINE L1 -2 6162 4845 2443 160 24 7 chr11 24930208 24930626 -125852927 - MER61B LTR ERV1 0 425 1 1619 285 105 31 chr11 24930626 24930918 -125852635 - L1ME2 LINE L1 -1319 4845 4576 621 284 132 24 chr11 24930968 24931550 -125852003 - L1ME2 LINE L1 -2129 4017 3373 21 0 0 0 chr11 24931703 24931724 -125851829 + AT_rich Low_complexity Low_complexity 1 21 0 2354 76 0 16 chr11 24932450 24932765 -125850788 - AluY SINE Alu -1 310 1 31 58 0 0 chr11 24933188 24933240 -125850313 + AT_rich Low_complexity Low_complexity 1 52 0 768 164 63 6 chr11 24933240 24933399 -125850154 - L1MA7 LINE L1 -48 6243 6076 2005 277 55 38 chr11 24934046 24935288 -125848265 - L1M1 LINE L1 -4159 3407 2264 708 313 65 52 chr11 24935714 24936174 -125847379 - L1M1 LINE L1 -5813 1683 1218 5351 173 69 20 chr11 24936207 24936703 -125846850 + Tigger3b DNA MER2_type 2 472 -2556 2367 43 23 13 chr11 24936703 24937004 -125846549 - AluY SINE Alu -7 304 1 5351 173 69 20 chr11 24937004 24937680 -125845873 + Tigger3b DNA MER2_type 472 1231 0 1801 232 54 22 chr11 24938000 24938539 -125845014 + LTR38 LTR ERV1 1 556 0 279 352 55 40 chr11 24989018 24989416 -125794137 + L2 LINE L2 2244 2647 -667 2369 93 0 3 chr11 24989633 24989946 -125793607 + AluSp SINE Alu 1 312 -1 202 287 85 53 chr11 24991040 24991134 -125792419 + MER5A DNA MER1_type 7 103 -86 228 135 0 0 chr11 24991167 24991204 -125792349 + (TG)n Simple_repeat Simple_repeat 2 38 0 281 212 0 0 chr11 24991210 24991276 -125792277 - L1MC4 LINE L1 -1337 6705 6640 689 311 203 32 chr11 24991537 24992065 -125791488 + MLT2F LTR ERVL 1 618 -45 1734 163 53 14 chr11 24992140 24992501 -125791052 - THE1C LTR MaLR 0 375 1 3513 126 34 13 chr11 24992508 24993065 -125790488 - THE1C-int LTR MaLR -7 1573 1005 808 107 57 0 chr11 24993348 24993470 -125790083 + HERVK14 LTR ERVK 4272 4400 -1545 * 3338 63 30 4 chr11 24993463 24994127 -125789426 + HERVK14 LTR ERVK 5009 5759 -186 333 206 0 18 chr11 24994127 24994202 -125789351 + MER41C LTR ERV1 1 61 -493 558 58 66 157 chr11 24994203 24994324 -125789229 + HERVK14 LTR ERVK 5836 5945 0 4294 70 39 3 chr11 24994327 24994914 -125788639 + LTR14B LTR ERVK 1 608 0 367 352 0 0 chr11 24994925 24995033 -125788520 - LTR16C LTR ERVL -316 175 68 383 342 32 21 chr11 24995101 24995288 -125788265 - MIR SINE MIR -63 199 11 268 423 0 7 chr11 24995911 24996053 -125787500 + L2 LINE L2 2831 2971 -301 708 257 75 7 chr11 24996056 24996348 -125787205 + L1ME1 LINE L1 4019 4330 -1816 6923 261 27 13 chr11 24996351 24999362 -125784191 - L1PA12 LINE L1 -2324 5260 2182 243 295 42 11 chr11 24999598 24999693 -125783860 - L1PA12 LINE L1 -5399 2182 2085 401 356 49 26 chr11 24999902 25000287 -125783266 - L1PA12 LINE L1 -6202 1372 979 1012 262 187 22 chr11 25000305 25000850 -125782703 + L1ME1 LINE L1 4635 5269 -877 277 211 0 77 chr11 25000860 25000964 -125782589 + L1MC4 LINE L1 6614 6709 -1333 1689 257 67 59 chr11 25000983 25001827 -125781726 + L1ME1 LINE L1 5281 6165 -1 1035 333 71 2 chr11 25002880 25003300 -125780253 - LTR16B LTR ERVL -11 453 5 1360 333 59 27 chr11 25003602 25004780 -125778773 - HERV16 LTR ERVL -3423 1573 355 1267 292 33 9 chr11 25005075 25005524 -125778029 - LTR16B LTR ERVL -4 460 1 184 364 15 0 chr11 25006018 25006084 -125777469 + L2 LINE L2 3247 3313 0 21 89 0 0 chr11 25006459 25006515 -125777038 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr11 25007970 25007991 -125775562 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 25008079 25008100 -125775453 + AT_rich Low_complexity Low_complexity 1 21 0 2351 133 11 6 chr11 25008252 25008614 -125774939 - THE1B LTR MaLR 0 364 1 192 77 0 0 chr11 25009057 25009083 -125774470 + (TCCCC)n Simple_repeat Simple_repeat 5 30 0 647 132 40 29 chr11 25009087 25009261 -125774292 + CT-rich Low_complexity Low_complexity 3 178 0 212 129 0 0 chr11 25009265 25009296 -125774257 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 412 284 86 75 chr11 25009297 25009589 -125773964 - L1MC4 LINE L1 -977 7065 6771 660 345 105 20 chr11 25009805 25010254 -125773299 - L2 LINE L2 -1 3312 2826 195 271 62 0 chr11 25011784 25011832 -125771721 - L2 LINE L2 -74 3239 3189 25 0 0 0 chr11 25013168 25013193 -125770360 + AT_rich Low_complexity Low_complexity 1 25 0 1586 221 67 81 chr11 25013403 25013924 -125769629 - MLT2B2 LTR ERVL 0 515 2 254 253 135 18 chr11 25013939 25014109 -125769444 - L1ME LINE L1 -306 5815 5626 636 253 10 35 chr11 25014716 25014914 -125768639 - MER3 DNA MER1_type -4 205 13 23 33 0 0 chr11 25016890 25016920 -125766633 + AT_rich Low_complexity Low_complexity 1 30 0 218 342 41 66 chr11 25017035 25017231 -125766322 - L2 LINE L2 -221 3051 2861 267 257 43 0 chr11 25017662 25017732 -125765821 - L2 LINE L2 -2 3270 3198 277 328 101 0 chr11 25017947 25018066 -125765487 - L2 LINE L2 -1 3312 3182 250 299 186 10 chr11 25019099 25019196 -125764357 - L2 LINE L2 0 3313 3200 22 56 0 0 chr11 25020123 25020159 -125763394 + AT_rich Low_complexity Low_complexity 1 36 0 447 125 0 0 chr11 25020171 25020235 -125763318 - AluS SINE Alu -240 70 7 489 256 0 17 chr11 25020835 25020952 -125762601 - L1M3 LINE L1 -562 5772 5658 1713 163 22 22 chr11 25020961 25021322 -125762231 + L1MA10 LINE L1 5967 6327 -7 2121 128 3 0 chr11 25021324 25021630 -125761923 + AluSx SINE Alu 1 307 -5 23 86 0 0 chr11 25021908 25021966 -125761587 + AT_rich Low_complexity Low_complexity 1 58 0 25 65 0 0 chr11 25022221 25022267 -125761286 + AT_rich Low_complexity Low_complexity 1 46 0 324 276 35 0 chr11 25022777 25022864 -125760689 + MER94 DNA DNA 43 132 -2 533 238 111 6 chr11 25023032 25023213 -125760340 - MIR SINE MIR -25 237 38 272 183 167 33 chr11 25026092 25026212 -125757341 - Charlie7 DNA MER1_type -2443 169 34 1675 199 22 14 chr11 25026848 25027210 -125756343 - MLT1A1 LTR MaLR 0 365 1 215 103 26 0 chr11 25028445 25028484 -125755069 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 189 378 57 10 chr11 25029581 25029774 -125753779 + L2 LINE L2 2437 2638 -676 25 51 0 0 chr11 25030606 25030645 -125752908 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr11 25031388 25031409 -125752144 + AT_rich Low_complexity Low_complexity 1 21 0 190 0 67 0 chr11 25032258 25032288 -125751265 + (TTTTTA)n Simple_repeat Simple_repeat 1 32 0 7157 37 8 0 chr11 25032288 25033697 -125749856 - L1PA4 LINE L1 -1 6154 4730 250 231 19 0 chr11 25034083 25034135 -125749418 + MIR3 SINE MIR 130 182 -26 1272 265 39 48 chr11 25034331 25034792 -125748761 - MLT1C LTR MaLR 0 467 11 344 263 81 0 chr11 25035312 25035411 -125748142 - MIR SINE MIR -87 175 69 2498 172 13 99 chr11 25035507 25036112 -125747441 - MLT2B3 LTR ERVL 0 554 2 21 0 0 0 chr11 25036222 25036243 -125747310 + AT_rich Low_complexity Low_complexity 1 21 0 202 255 123 47 chr11 25036511 25036617 -125746936 - MIR SINE MIR -1 261 148 253 257 99 10 chr11 25036794 25036895 -125746658 - MIR SINE MIR -113 149 40 480 287 83 28 chr11 25037642 25037858 -125745695 + MIR SINE MIR 11 238 -24 423 300 46 21 chr11 25037872 25038152 -125745401 + HAL1 LINE L1 1751 2037 -470 4360 104 222 82 chr11 25038308 25039650 -125743903 - pTR5 LTR ERV1 0 2438 743 1288 275 73 14 chr11 25040286 25040722 -125742831 - MLT1C LTR MaLR 0 467 6 252 181 248 9 chr11 25040732 25040837 -125742716 - MLT1C-int LTR MaLR -5 1366 1237 874 223 23 62 chr11 25041034 25041290 -125742263 + L1ME3 LINE L1 5886 6131 -31 1294 220 9 28 chr11 25041313 25041631 -125741922 + AluJb SINE Alu 1 312 0 204 194 0 32 chr11 25041634 25041696 -125741857 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 33 25 0 0 chr11 25042404 25042444 -125741109 + AT_rich Low_complexity Low_complexity 1 40 0 688 144 96 8 chr11 25042535 25042660 -125740893 + L1PA15-16 LINE L1 1 136 -6713 * 2898 138 21 38 chr11 25042654 25043211 -125740342 + L1PA15-16 LINE L1 1884 2431 -4418 17344 176 74 9 chr11 25043211 25043914 -125739639 + L1PA16 LINE L1 1026 1682 -4484 18896 50 5 2 chr11 25043914 25047124 -125736429 - L1PA5 LINE L1 0 6154 2939 17344 176 74 9 chr11 25047124 25050232 -125733321 + L1PA16 LINE L1 1682 4574 -1592 411 21 0 0 chr11 25050232 25050280 -125733273 + (CA)n Simple_repeat Simple_repeat 1 48 0 17344 176 74 9 chr11 25050280 25051864 -125731689 + L1PA16 LINE L1 4574 6053 -113 206 200 18 73 chr11 25052424 25052479 -125731074 - MER5A DNA MER1_type 0 189 138 1047 264 106 19 chr11 25052624 25052991 -125730562 - LTR16B LTR ERVL -65 399 1 554 244 76 8 chr11 25052991 25053122 -125730431 - MER5A DNA MER1_type -43 146 7 699 266 30 15 chr11 25054576 25054779 -125728774 + MLT1C LTR MaLR 262 467 0 2250 214 34 84 chr11 25054779 25055447 -125728106 + MLT1C-int LTR MaLR 1 635 -736 5577 58 0 0 chr11 25055498 25056211 -125727342 - L1P LINE L1 -1128 5018 4306 217 320 53 73 chr11 25056483 25056633 -125726920 - MIR SINE MIR -113 149 3 368 336 107 77 chr11 25057429 25058036 -125725517 + L2 LINE L2 2077 2701 -613 22 94 0 0 chr11 25058295 25058359 -125725194 + AT_rich Low_complexity Low_complexity 1 64 0 216 167 0 0 chr11 25058682 25058718 -125724835 + (CA)n Simple_repeat Simple_repeat 2 37 0 2003 130 0 0 chr11 25058952 25059323 -125724230 - AluSx SINE Alu 0 371 1 181 274 65 16 chr11 25059339 25059401 -125724152 + L2 LINE L2 3204 3268 -4 23 101 0 0 chr11 25059500 25059579 -125723974 + AT_rich Low_complexity Low_complexity 1 79 0 351 305 118 21 chr11 25059750 25059937 -125723616 - MIR SINE MIR 0 262 58 25 31 0 0 chr11 25059951 25059983 -125723570 + AT_rich Low_complexity Low_complexity 1 32 0 536 307 99 39 chr11 25060081 25060539 -125723014 - MLT1H1 LTR MaLR 0 555 32 207 69 0 0 chr11 25060895 25060924 -125722629 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr11 25061324 25061347 -125722206 + AT_rich Low_complexity Low_complexity 1 23 0 658 110 50 0 chr11 25061575 25061675 -125721878 - Tigger1 DNA MER2_type -1597 821 717 23 54 0 0 chr11 25061679 25061716 -125721837 + AT_rich Low_complexity Low_complexity 1 37 0 261 247 21 21 chr11 25062078 25062171 -125721382 + GA-rich Low_complexity Low_complexity 2 94 0 385 320 56 15 chr11 25063510 25063707 -125719846 + LTR68 LTR ERV1 208 412 -328 441 0 0 0 chr11 25063968 25064017 -125719536 + (TG)n Simple_repeat Simple_repeat 2 50 0 2354 86 0 10 chr11 25064105 25064409 -125719144 + AluSp SINE Alu 1 301 -12 980 255 136 3 chr11 25064776 25065086 -125718467 + MER110A LTR ERV1 1 351 -117 261 320 102 16 chr11 25065629 25065757 -125717796 + MIR SINE MIR 124 262 0 21 0 0 0 chr11 25066059 25066080 -125717473 + AT_rich Low_complexity Low_complexity 1 21 0 800 206 52 99 chr11 25066239 25066604 -125716949 + LTR37A LTR ERV1 79 426 0 2219 150 31 72 chr11 25066934 25067267 -125716286 + MSTA LTR MaLR 1 346 -82 1909 134 0 77 chr11 25067267 25067632 -125715921 + MER1B DNA MER1_type 1 337 0 2219 150 31 72 chr11 25067632 25067676 -125715877 + MSTA LTR MaLR 346 360 -68 2277 91 7 0 chr11 25067676 25067985 -125715568 + AluSp SINE Alu 1 311 -2 2219 150 31 72 chr11 25067985 25068052 -125715501 + MSTA LTR MaLR 360 428 0 21 0 0 0 chr11 25068568 25068589 -125714964 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 25069966 25069987 -125713566 + AT_rich Low_complexity Low_complexity 1 21 0 462 18 0 0 chr11 25070118 25070173 -125713380 + (CA)n Simple_repeat Simple_repeat 2 56 0 30 0 0 0 chr11 25070387 25070417 -125713136 + AT_rich Low_complexity Low_complexity 1 30 0 372 185 54 9 chr11 25070422 25070745 -125712808 + (TA)n Simple_repeat Simple_repeat 1 337 0 21 0 0 0 chr11 25070887 25070908 -125712645 + AT_rich Low_complexity Low_complexity 1 21 0 377 331 54 0 chr11 25072639 25072769 -125710784 + MIR SINE MIR 55 191 -71 23 68 0 0 chr11 25073116 25073160 -125710393 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr11 25073389 25073419 -125710134 + AT_rich Low_complexity Low_complexity 1 30 0 1351 177 4 35 chr11 25073755 25074015 -125709538 + AluJo SINE Alu 2 253 -59 1419 189 48 22 chr11 25074026 25074339 -125709214 + THE1C LTR MaLR 55 375 0 8594 159 14 37 chr11 25074342 25075956 -125707597 + THE1C-int LTR MaLR 4 1580 0 1360 149 64 34 chr11 25075956 25076251 -125707302 + THE1C LTR MaLR 1 304 -71 22 0 0 0 chr11 25076476 25076498 -125707055 + AT_rich Low_complexity Low_complexity 1 22 0 219 285 118 59 chr11 25076690 25076876 -125706677 - MIR SINE MIR -13 249 53 330 212 12 24 chr11 25077590 25077675 -125705878 + LTR33A LTR ERVL 440 523 0 1372 142 3 154 chr11 25079525 25079902 -125703651 - AluSx SINE Alu 0 327 1 25 65 0 0 chr11 25080063 25080109 -125703444 + AT_rich Low_complexity Low_complexity 1 46 0 260 315 67 55 chr11 25080458 25080623 -125702930 + MER5B DNA MER1_type 4 184 -5 4552 120 14 26 chr11 25081225 25081992 -125701561 - L1MA3 LINE L1 -2 6303 5546 9649 173 35 34 chr11 25081992 25084169 -125699384 - L1M1 LINE L1 -4178 3387 88 303 49 0 0 chr11 25084169 25084210 -125699343 + (TG)n Simple_repeat Simple_repeat 1 41 0 9649 173 35 34 chr11 25084210 25084286 -125699267 - L1M1 LINE L1 -7477 88 14 1017 245 44 26 chr11 25084814 25085198 -125698355 - MER69 DNA AcHobo -42 2484 2094 2370 97 0 3 chr11 25085300 25085608 -125697945 - AluSc SINE Alu -2 307 1 817 233 44 29 chr11 25085994 25086200 -125697353 - MER58A DNA MER1_type -15 209 1 216 330 62 18 chr11 25087802 25088004 -125695549 - MIR SINE MIR 0 262 11 207 0 0 0 chr11 25088849 25088872 -125694681 + (A)n Simple_repeat Simple_repeat 1 23 0 1229 137 0 0 chr11 25088872 25089054 -125694499 + AluSc SINE Alu 119 300 -9 521 305 174 30 chr11 25090001 25090299 -125693254 + MER115 DNA AcHobo 316 656 -37 191 350 29 29 chr11 25090463 25090566 -125692987 + L2 LINE L2 2933 3035 -237 238 289 0 0 chr11 25091074 25091164 -125692389 - L1MC4 LINE L1 -1339 6703 6614 25 75 0 0 chr11 25091175 25091228 -125692325 + AT_rich Low_complexity Low_complexity 1 53 0 2639 158 55 29 chr11 25091451 25092000 -125691553 + L1MC1 LINE L1 5755 6317 -16 443 264 58 19 chr11 25092345 25092603 -125690950 + L1MDa LINE L1 2281 2548 -3992 274 164 123 0 chr11 25092628 25092701 -125690852 + L1MDa LINE L1 2531 2612 -3928 43100 29 21 1 chr11 25092703 25098722 -125684831 + L1HS LINE L1 2 6144 -11 908 251 108 8 chr11 25098886 25099284 -125684269 + L1MDa LINE L1 2761 3198 -3342 234 0 0 0 chr11 25099773 25099799 -125683754 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 1175 283 43 5 chr11 25099990 25100364 -125683189 + MER63 DNA MER1_type 674 1061 0 824 179 7 32 chr11 25100519 25100780 -125682773 + CT-rich Low_complexity Low_complexity 1 254 0 1182 147 32 5 chr11 25100781 25100971 -125682582 - AluSx SINE Alu -117 195 1 246 239 28 0 chr11 25100992 25101063 -125682490 + CT-rich Low_complexity Low_complexity 2 74 0 1284 173 20 0 chr11 25102712 25102961 -125680592 - L1MA5 LINE L1 0 6300 6047 1951 144 7 16 chr11 25102964 25103269 -125680284 - AluSx SINE Alu -7 305 4 4793 127 31 14 chr11 25103276 25104043 -125679510 + LTR17 LTR ERV1 1 780 0 2767 182 24 9 chr11 25104062 25104605 -125678948 + L1MA5 LINE L1 5478 6028 -272 684 278 35 66 chr11 25105322 25105718 -125677835 - L1ME2 LINE L1 -1 6163 5780 2149 168 36 32 chr11 25105720 25106267 -125677286 - MLT2A2 LTR ERVL -2 552 1 363 317 37 22 chr11 25106268 25106536 -125677017 - L1ME2 LINE L1 -386 5780 5509 574 231 139 54 chr11 25106539 25106809 -125676744 - L1ME2 LINE L1 -724 5438 5192 1798 83 91 26 chr11 25106809 25107132 -125676421 + AluSg SINE Alu 1 340 0 574 231 139 54 chr11 25107132 25107368 -125676185 - L1ME2 LINE L1 -970 5192 4869 1713 245 67 60 chr11 25107393 25107927 -125675626 + MER77 LTR ERV1 55 592 -13 598 267 148 3 chr11 25107958 25108303 -125675250 - L1ME2 LINE L1 -1279 4867 4473 211 298 0 0 chr11 25108551 25108608 -125674945 + GA-rich Low_complexity Low_complexity 4 60 0 243 0 0 0 chr11 25108687 25108714 -125674839 + (CA)n Simple_repeat Simple_repeat 1 27 0 28 0 0 0 chr11 25108807 25108835 -125674718 + AT_rich Low_complexity Low_complexity 1 28 0 1691 152 71 9 chr11 25108943 25109266 -125674287 - MER61A LTR ERV1 0 343 1 853 354 70 11 chr11 25110010 25110580 -125672973 + ERVL LTR ERVL 4072 4675 -1089 293 232 152 0 chr11 25110834 25110946 -125672607 - MER104 DNA Tc2 -51 129 1 282 306 62 16 chr11 25111026 25111219 -125672334 - L1ME LINE L1 -289 5881 5680 421 312 45 9 chr11 25111350 25111571 -125671982 - L1ME LINE L1 -577 5585 5357 381 43 0 0 chr11 25112191 25112238 -125671315 + (CA)n Simple_repeat Simple_repeat 2 48 0 776 166 21 0 chr11 25112242 25112387 -125671166 - L1MA7 LINE L1 -41 6250 6103 252 86 0 0 chr11 25112615 25112650 -125670903 + (TA)n Simple_repeat Simple_repeat 1 35 0 252 350 72 22 chr11 25114410 25114560 -125668993 + MIR SINE MIR 3 159 -70 303 243 189 9 chr11 25114780 25114891 -125668662 + L2 LINE L2 3183 3313 0 336 344 77 57 chr11 25116050 25116297 -125667256 - MIR SINE MIR -6 256 5 1946 160 45 1 chr11 25116511 25117156 -125666397 - L1P5 LINE L1 -584 5570 4904 5776 185 50 24 chr11 25117179 25117748 -125665805 - L1PBb LINE L1 -3264 2939 2387 2240 95 7 3 chr11 25117748 25118053 -125665500 + AluY SINE Alu 1 306 -5 5776 185 50 24 chr11 25118053 25119791 -125663762 - L1PBb LINE L1 -3816 2387 544 2214 116 0 0 chr11 25119791 25120085 -125663468 + AluSx SINE Alu 1 294 -18 5776 185 50 24 chr11 25120085 25120589 -125662964 - L1PBb LINE L1 -5659 544 55 4631 29 7 0 chr11 25120589 25121138 -125662415 + L1PA4 LINE L1 5601 6153 -2 31 0 0 0 chr11 25121143 25121174 -125662379 + AT_rich Low_complexity Low_complexity 1 31 0 3997 293 28 28 chr11 25121191 25121675 -125661878 - L1PBa LINE L1 -5224 1639 1156 2044 151 40 0 chr11 25121675 25121999 -125661554 - MER1B DNA MER1_type 0 337 1 3997 293 28 28 chr11 25121999 25123151 -125660402 - L1PBa LINE L1 -5706 1157 3 1773 151 4 0 chr11 25123598 25123857 -125659696 + AluSx SINE Alu 39 298 -14 497 290 35 0 chr11 25123917 25124062 -125659491 + MLT1J2 LTR MaLR 31 180 -270 209 214 68 17 chr11 25124445 25124562 -125658991 + (TATAA)n Simple_repeat Simple_repeat 1 123 0 23 33 0 0 chr11 25124977 25125007 -125658546 + AT_rich Low_complexity Low_complexity 1 30 0 2529 50 0 3 chr11 25125441 25125738 -125657815 - AluY SINE Alu -13 298 3 363 161 0 62 chr11 25125939 25126020 -125657533 + MADE1 DNA Mariner 1 76 -4 2225 128 8 35 chr11 25126020 25126394 -125657159 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr11 25126431 25126459 -125657094 + AT_rich Low_complexity Low_complexity 1 28 0 5324 206 32 27 chr11 25126632 25127960 -125655593 + L1MA5 LINE L1 3353 4687 -1459 * 5388 152 47 6 chr11 25127954 25128989 -125654564 + L1MA5 LINE L1 5157 6254 -46 1490 218 0 11 chr11 25128992 25129276 -125654277 + AluJo SINE Alu 1 281 -31 287 148 0 0 chr11 25129320 25129374 -125654179 + L1MA5 LINE L1 6245 6298 -2 617 291 81 0 chr11 25129821 25130031 -125653522 - MIR SINE MIR -6 256 30 773 363 65 34 chr11 25130115 25130683 -125652870 + MER115 DNA AcHobo 2 587 -106 27 29 0 0 chr11 25131474 25131508 -125652045 + AT_rich Low_complexity Low_complexity 1 34 0 331 321 0 51 chr11 25133582 25133719 -125649834 - MIR SINE MIR -6 256 127 250 337 121 6 chr11 25133776 25133942 -125649611 - L2 LINE L2 -10 3303 3119 1479 224 134 33 chr11 25134018 25134442 -125649111 + MLT2B1 LTR ERVL 3 469 -51 6186 100 9 3 chr11 25134601 25136111 -125647442 - L1PA10 LINE L1 -4 6164 4636 213 39 0 0 chr11 25136111 25136137 -125647416 + (TTG)n Simple_repeat Simple_repeat 2 27 0 772 204 0 7 chr11 25136139 25136291 -125647262 - AluJb SINE Alu -25 287 137 944 307 95 46 chr11 25136902 25137308 -125646245 - MLT1E2 LTR MaLR -7 619 142 22 0 0 0 chr11 25138033 25138055 -125645498 + AT_rich Low_complexity Low_complexity 1 22 0 1291 348 40 25 chr11 25138274 25139191 -125644362 - HERVL LTR ERVL -1253 4235 3302 518 286 62 58 chr11 25140126 25140434 -125643119 - LTR16A1 LTR ERVL -118 339 31 203 147 0 0 chr11 25140472 25140506 -125643047 + (TC)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr11 25140594 25140616 -125642937 + AT_rich Low_complexity Low_complexity 1 22 0 378 272 58 102 chr11 25141038 25141244 -125642309 + MER58C DNA MER1_type 2 198 -17 425 366 21 16 chr11 25141515 25141701 -125641852 - MER5A DNA MER1_type 0 189 3 379 247 75 75 chr11 25141788 25141962 -125641591 - L2 LINE L2 -23 3290 3117 206 171 24 0 chr11 25142039 25142080 -125641473 - L2 LINE L2 -614 2700 2659 1771 216 58 19 chr11 25142107 25142534 -125641019 + MLT1D LTR MaLR 62 505 0 1668 319 72 25 chr11 25142534 25143326 -125640227 - L2 LINE L2 -654 2660 1832 390 321 97 20 chr11 25143316 25143512 -125640041 + MIR SINE MIR 49 259 -3 * 1613 111 36 21 chr11 25144146 25144425 -125639128 - L1MA5A LINE L1 -1 6296 6014 247 188 0 0 chr11 25144576 25144624 -125638929 - L1PA15-16 LINE L1 -3931 2918 2871 1871 151 0 3 chr11 25145449 25145771 -125637782 - AluSx SINE Alu 0 321 1 311 136 17 0 chr11 25145890 25145949 -125637604 + (CA)n Simple_repeat Simple_repeat 2 61 0 1876 147 57 35 chr11 25146110 25146477 -125637076 + THE1C LTR MaLR 1 375 0 201 139 0 0 chr11 25146525 25146568 -125636985 + (CAA)n Simple_repeat Simple_repeat 2 44 0 731 240 17 11 chr11 25146643 25146822 -125636731 + MER20 DNA MER1_type 36 215 -4 355 349 120 5 chr11 25147203 25147395 -125636158 + LTR33 LTR ERVL 2 215 -306 180 77 0 0 chr11 25147575 25147601 -125635952 + (TAAAAA)n Simple_repeat Simple_repeat 2 27 0 2048 128 0 3 chr11 25148169 25148466 -125635087 - AluSg SINE Alu -14 296 1 759 267 234 16 chr11 25148466 25148912 -125634641 - Charlie1 DNA MER1_type -918 1843 5 328 355 94 0 chr11 25149197 25149335 -125634218 + L2 LINE L2 3103 3253 -19 241 374 25 74 chr11 25149445 25149648 -125633905 - MIR SINE MIR -14 248 56 228 241 0 0 chr11 25149866 25149924 -125633629 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 229 177 0 114 chr11 25150034 25150113 -125633440 + LTR66 LTR ERVL 367 436 -174 307 273 222 46 chr11 25150895 25151111 -125632442 + MER112 DNA MER1_type 4 257 -3 6551 13 0 0 chr11 25151315 25152064 -125631489 - L1PA2 LINE L1 -147 6008 5260 * 10226 24 0 0 chr11 25152059 25153266 -125630287 + L1PA2 LINE L1 4051 5257 -889 316 301 135 0 chr11 25155092 25155248 -125628305 + MIR SINE MIR 71 247 -15 2237 102 0 0 chr11 25155435 25155720 -125627833 - AluSg SINE Alu -11 299 15 224 213 16 0 chr11 25155976 25156037 -125627516 + (TA)n Simple_repeat Simple_repeat 2 63 0 300 102 0 0 chr11 25156052 25156101 -125627452 + (TG)n Simple_repeat Simple_repeat 2 50 0 1756 233 35 19 chr11 25156602 25157313 -125626240 + MER45B DNA AcHobo 37 797 -243 952 228 48 4 chr11 25157352 25157602 -125625951 + MER45B DNA AcHobo 780 1040 0 1048 315 28 59 chr11 25158426 25159001 -125624552 + LTR67 LTR ERVL 1 557 0 1256 241 82 15 chr11 25159587 25159928 -125623625 - MLT1A1 LTR MaLR -1 364 1 240 111 0 0 chr11 25161040 25161076 -125622477 + (A)n Simple_repeat Simple_repeat 1 36 0 2006 163 14 62 chr11 25162364 25162799 -125620754 - MLT2D LTR ERVL 0 414 1 244 342 86 26 chr11 25163000 25163117 -125620436 - L2 LINE L2 -5 3267 3144 277 318 138 11 chr11 25163552 25163741 -125619812 + MIR SINE MIR 13 225 -37 2148 132 0 3 chr11 25164030 25164341 -125619212 + AluSx SINE Alu 3 312 0 204 331 62 62 chr11 25164793 25164938 -125618615 - MIR3 SINE MIR -36 172 28 2596 33 3 0 chr11 25165382 25165688 -125617865 + AluY SINE Alu 1 307 -4 4045 160 10 26 chr11 25166177 25166945 -125616608 - L1PB4 LINE L1 -169 5987 5233 4852 195 27 21 chr11 25166961 25168056 -125615497 + L1MA9 LINE L1 5070 6171 -141 180 0 0 0 chr11 25168056 25168076 -125615477 + (CA)n Simple_repeat Simple_repeat 1 20 0 4852 195 27 21 chr11 25168076 25168218 -125615335 + L1MA9 LINE L1 6171 6311 -1 202 118 29 0 chr11 25168231 25168265 -125615288 + (CAA)n Simple_repeat Simple_repeat 2 36 0 207 318 12 35 chr11 25168685 25168770 -125614783 - L2 LINE L2 -24 3248 3166 2753 104 15 0 chr11 25169193 25169588 -125613965 + HSMAR1 DNA Mariner 3 403 -884 2643 201 38 61 chr11 25169590 25170432 -125613121 + LTR1 LTR ERV1 2 785 0 5531 123 21 25 chr11 25170432 25171322 -125612231 + HSMAR1 DNA Mariner 401 1287 0 247 326 47 16 chr11 25171955 25172084 -125611469 - MIR SINE MIR -7 255 123 601 291 73 8 chr11 25172208 25172455 -125611098 + L2 LINE L2 3050 3312 -1 285 360 20 0 chr11 25172930 25173030 -125610523 + L3 LINE CR1 915 1016 -561 195 195 0 0 chr11 25173092 25173133 -125610420 - L2 LINE L2 0 3313 3273 250 387 12 18 chr11 25174955 25175123 -125608430 + L2 LINE L2 2715 2881 -433 26 64 0 0 chr11 25175265 25175312 -125608241 + AT_rich Low_complexity Low_complexity 1 47 0 215 381 0 31 chr11 25175342 25175439 -125608114 - L2 LINE L2 -25 3247 3154 29 47 0 0 chr11 25177184 25177227 -125606326 + AT_rich Low_complexity Low_complexity 1 43 0 183 42 0 0 chr11 25177629 25177653 -125605900 + (A)n Simple_repeat Simple_repeat 1 24 0 716 251 45 15 chr11 25177949 25178148 -125605405 - MLT1F LTR MaLR -268 274 70 359 237 0 13 chr11 25178161 25178237 -125605316 + THE1C LTR MaLR 1 75 -353 3965 120 100 125 chr11 25178273 25179719 -125603834 - pTR5 LTR ERV1 0 2438 744 1474 118 81 37 chr11 25179719 25179990 -125603563 + THE1C LTR MaLR 93 375 0 233 200 89 0 chr11 25179990 25180032 -125603521 - MLT1F LTR MaLR -494 48 3 600 317 56 27 chr11 25181906 25182390 -125601163 - MLT1G1 LTR MaLR 0 595 1 1216 266 46 48 chr11 25182630 25183066 -125600487 - MLT1D LTR MaLR -48 457 23 22 0 0 0 chr11 25183582 25183604 -125599949 + AT_rich Low_complexity Low_complexity 1 22 0 875 117 12 177 chr11 25183763 25184012 -125599541 - Tigger7 DNA MER2_type -69 2418 2211 1386 229 8 4 chr11 25184014 25184281 -125599272 - Tigger7 DNA MER2_type -465 268 1 1357 261 52 45 chr11 25185460 25186290 -125597263 + L1ME1 LINE L1 740 1577 -4503 610 258 42 21 chr11 25186290 25186577 -125596976 - L1ME1 LINE L1 -3909 3656 3364 927 257 14 4 chr11 25186577 25186857 -125596696 + L1ME1 LINE L1 3668 3950 -3615 1744 229 93 63 chr11 25187013 25188336 -125595217 + L1ME1 LINE L1 6216 7564 -21 270 319 143 45 chr11 25189459 25189857 -125593696 - MLT1K LTR MaLR -15 573 137 25 0 0 0 chr11 25190050 25190075 -125593478 + AT_rich Low_complexity Low_complexity 1 25 0 329 248 90 23 chr11 25190087 25190220 -125593333 + MIR SINE MIR 73 214 -48 427 175 21 21 chr11 25190235 25190332 -125593221 - FLAM_A SINE Alu -1 141 45 376 254 22 28 chr11 25191027 25191208 -125592345 + (TA)n Simple_repeat Simple_repeat 1 180 0 3135 119 73 9 chr11 25191292 25191823 -125591730 + MER34B LTR ERV1 1 565 0 207 0 0 0 chr11 25192112 25192135 -125591418 + (T)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr11 25192349 25192370 -125591183 + (T)n Simple_repeat Simple_repeat 1 21 0 1691 124 7 29 chr11 25192448 25192723 -125590830 + AluSx SINE Alu 36 304 -8 405 322 29 34 chr11 25192901 25193109 -125590444 + MIR SINE MIR 51 257 -5 224 275 29 29 chr11 25194104 25194173 -125589380 + MIR SINE MIR 82 150 -112 507 293 97 33 chr11 25194365 25194972 -125588581 - L1M4 LINE L1 -1063 5083 4438 22 56 0 0 chr11 25195158 25195194 -125588359 + AT_rich Low_complexity Low_complexity 1 36 0 2667 211 18 9 chr11 25195260 25195811 -125587742 - MER74A LTR ERVL 0 558 3 25 75 0 0 chr11 25195849 25195902 -125587651 + AT_rich Low_complexity Low_complexity 1 53 0 478 301 69 42 chr11 25195946 25196354 -125587199 - L1MC4a LINE L1 -1916 5892 5474 348 332 74 5 chr11 25196424 25196614 -125586939 - L1MC4a LINE L1 -2399 3747 3545 1843 113 3 31 chr11 25197110 25197402 -125586151 - AluSx SINE Alu 0 312 29 301 356 0 0 chr11 25199200 25199304 -125584249 - MIR3 SINE MIR -24 184 81 274 200 0 0 chr11 25199675 25199725 -125583828 + Alu SINE Alu 245 294 -8 427 242 0 0 chr11 25199732 25199823 -125583730 - MER67D LTR ERV1 -417 97 7 2756 198 46 132 chr11 25200564 25201536 -125582017 - MER21A LTR ERV1 -7 924 36 857 178 53 0 chr11 25201565 25201734 -125581819 + HSMAR2 DNA Mariner 1 178 -1124 708 80 7 11 chr11 25201734 25201841 -125581712 - THE1B LTR MaLR 0 364 264 * 1189 166 5 5 chr11 25201838 25202043 -125581510 + HSMAR2 DNA Mariner 617 821 -481 * 1251 202 8 12 chr11 25202038 25202296 -125581257 - THE1A LTR MaLR -98 257 1 1589 161 11 4 chr11 25202312 25202586 -125580967 + HSMAR2 DNA Mariner 181 456 -846 * 3879 149 41 18 chr11 25202579 25203303 -125580250 + HSMAR2 DNA Mariner 562 1302 0 384 314 76 8 chr11 25203989 25204343 -125579210 - L1M4 LINE L1 -1715 4431 4054 428 218 10 102 chr11 25204493 25204690 -125578863 - L1ME3A LINE L1 -87 6477 6299 54 16 0 0 chr11 25204703 25204764 -125578789 + AT_rich Low_complexity Low_complexity 1 61 0 694 283 52 0 chr11 25204764 25205033 -125578520 - L1ME3A LINE L1 -243 6321 6039 957 191 0 6 chr11 25205033 25205206 -125578347 - AluJb SINE Alu -1 311 140 590 281 11 11 chr11 25205215 25205391 -125578162 - L1ME3A LINE L1 -472 6043 5856 21 57 0 0 chr11 25205621 25205656 -125577897 + AT_rich Low_complexity Low_complexity 1 35 0 2046 101 0 28 chr11 25205745 25206033 -125577520 - AluSc SINE Alu -21 288 9 744 290 87 48 chr11 25206043 25206581 -125576972 - L1ME3A LINE L1 -2991 3549 2991 1596 173 54 38 chr11 25206639 25207008 -125576545 + THE1C LTR MaLR 1 375 0 8927 151 27 32 chr11 25207012 25208592 -125574961 + MSTA-int LTR MaLR 5 1575 -5 1624 161 180 14 chr11 25208597 25208964 -125574589 + MSTA LTR MaLR 1 428 0 301 322 0 50 chr11 25208965 25209086 -125574467 - L1ME3A LINE L1 -5434 1096 982 34 24 0 0 chr11 25209177 25209218 -125574335 + AT_rich Low_complexity Low_complexity 1 41 0 1801 256 35 31 chr11 25209238 25209528 -125574025 - MLT1F1 LTR MaLR -84 483 189 7986 52 11 0 chr11 25209528 25210484 -125573069 + LTR5 LTR ERVK 1 966 -3 1801 256 35 31 chr11 25210484 25210674 -125572879 - MLT1F1 LTR MaLR -378 189 1 661 333 74 20 chr11 25210747 25211140 -125572413 - L1ME3A LINE L1 -5650 880 467 316 291 69 44 chr11 25212702 25212905 -125570648 + L2 LINE L2 3106 3313 0 193 304 36 0 chr11 25213401 25213457 -125570096 + MIR SINE MIR 204 261 -1 11266 45 2 0 chr11 25213559 25214967 -125568586 - L1PA5 LINE L1 -1745 4401 2991 7535 52 5 0 chr11 25214967 25216690 -125566863 + L1PA5 LINE L1 4425 6153 -1 248 371 11 34 chr11 25216703 25216878 -125566675 + MIR SINE MIR 86 256 -6 185 273 42 91 chr11 25216931 25217074 -125566479 + MIR SINE MIR 80 215 -47 1994 125 0 26 chr11 25217733 25218036 -125565517 - AluSx SINE Alu -17 295 1 199 300 29 14 chr11 25218341 25218411 -125565142 + L2 LINE L2 2906 2976 -337 3470 243 36 48 chr11 25218587 25219345 -125564208 - L1MD1 LINE L1 -1 6241 5475 718 82 20 0 chr11 25219345 25219443 -125564110 + HY3 scRNA scRNA 1 100 -1 3470 243 36 48 chr11 25219443 25220499 -125563054 - L1MD1 LINE L1 -767 5475 4454 1518 230 99 2 chr11 25220585 25221051 -125562502 + L1MDa LINE L1 1712 2222 -4318 1045 241 108 0 chr11 25221137 25221415 -125562138 - L1ME3A LINE L1 -6181 359 52 2425 111 75 8 chr11 25223646 25224035 -125559518 - MSTA LTR MaLR -11 417 3 1291 225 15 89 chr11 25224225 25224629 -125558924 - MLT1A2 LTR MaLR 0 374 1 1327 252 53 86 chr11 25224984 25225604 -125557949 - LTR9 LTR ERV1 -12 600 1 687 256 126 8 chr11 25225940 25226178 -125557375 - AluSg SINE Alu -44 266 1 318 254 155 14 chr11 25226771 25226857 -125556696 - MLT1J LTR MaLR -349 162 89 207 0 0 0 chr11 25226857 25226880 -125556673 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 318 254 155 14 chr11 25226880 25226935 -125556618 - MLT1J LTR MaLR -422 89 1 286 241 0 0 chr11 25228368 25228426 -125555127 - L2 LINE L2 0 3313 3256 23 0 0 0 chr11 25228604 25228627 -125554926 + AT_rich Low_complexity Low_complexity 1 23 0 198 200 0 0 chr11 25229066 25229101 -125554452 - L2 LINE L2 -556 2758 2724 1747 149 40 66 chr11 25230288 25230683 -125552870 - L1MA9 LINE L1 -12 6300 5916 1160 259 11 125 chr11 25230794 25231488 -125552065 - L1PA10 LINE L1 -255 5913 5299 9456 219 32 32 chr11 25231498 25231519 -125552034 - L1MA9 LINE L1 -961 5185 5166 219 36 0 0 chr11 25231519 25231547 -125552006 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9456 219 32 32 chr11 25231547 25234146 -125549407 - L1MA9 LINE L1 -980 5166 2563 477 172 9 60 chr11 25234172 25234288 -125549265 - FLAM_C SINE Alu -8 135 26 372 377 15 25 chr11 25234710 25234909 -125548644 + MIR3 SINE MIR 8 204 -4 180 338 38 12 chr11 25235568 25235648 -125547905 + MIR SINE MIR 42 123 -85 28 0 0 0 chr11 25235661 25235689 -125547864 + AT_rich Low_complexity Low_complexity 1 28 0 216 414 69 13 chr11 25236695 25236927 -125546626 - L2 LINE L2 -219 3053 2809 877 278 50 90 chr11 25237187 25237440 -125546113 + LTR16A LTR ERVL 21 283 -167 2099 192 29 7 chr11 25237440 25237857 -125545696 - MSTB LTR MaLR 0 426 1 8093 193 13 26 chr11 25237866 25239535 -125544018 - MSTB-int LTR MaLR -3 1648 1 2219 135 57 50 chr11 25239535 25239786 -125543767 - MSTB LTR MaLR 0 426 169 1745 153 49 0 chr11 25239786 25240095 -125543458 + AluSx SINE Alu 1 312 0 2219 135 57 50 chr11 25240095 25240266 -125543287 - MSTB LTR MaLR -257 169 1 877 278 50 90 chr11 25240266 25240422 -125543131 + LTR16A LTR ERVL 289 424 -26 588 283 66 20 chr11 25241462 25241660 -125541893 - MIR SINE MIR -50 212 6 486 0 0 0 chr11 25242101 25242155 -125541398 + (CA)n Simple_repeat Simple_repeat 1 54 0 274 261 92 39 chr11 25242548 25242678 -125540875 - MIR SINE MIR -101 161 25 683 335 44 24 chr11 25242760 25243190 -125540363 - LTR16A LTR ERVL -9 448 2 317 366 23 0 chr11 25243197 25243328 -125540225 - MIR SINE MIR -10 252 119 329 335 47 28 chr11 25245098 25245313 -125538240 - MLT1K LTR MaLR -368 220 2 263 167 15 0 chr11 25245348 25245414 -125538139 + (TA)n Simple_repeat Simple_repeat 1 67 0 743 199 54 18 chr11 25245620 25245786 -125537767 - FAM SINE Alu 0 175 4 257 235 259 0 chr11 25246401 25246486 -125537067 - MIR SINE MIR -8 254 148 488 309 75 53 chr11 25246796 25247116 -125536437 + MER68 LTR ERV1 236 562 0 1612 275 130 30 chr11 25247541 25248462 -125535091 - L1MDa LINE L1 -2658 3724 2897 4250 91 17 9 chr11 25248462 25249103 -125534450 - L1MA1 LINE L1 0 6302 5657 1612 275 130 30 chr11 25249103 25249522 -125534031 - L1MDa LINE L1 -3485 2897 2521 180 0 0 0 chr11 25249522 25249542 -125534011 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1612 275 130 30 chr11 25249542 25250122 -125533431 - L1MDa LINE L1 -3861 2521 1496 1706 39 5 0 chr11 25250133 25250339 -125533214 - L1P2 LINE L1 -1884 4262 4056 * 9064 34 11 1 chr11 25250336 25251863 -125531690 + L1P2 LINE L1 4269 5808 -347 6852 38 36 0 chr11 25251963 25252916 -125530637 + L1PA4 LINE L1 5171 6154 -1 317 292 83 49 chr11 25252918 25253349 -125530204 - L1MDa LINE L1 -4814 1568 1123 330 324 89 33 chr11 25253354 25253567 -125529986 - L1MDa LINE L1 -5472 1091 867 359 374 46 27 chr11 25253855 25254074 -125529479 - L1MDa LINE L1 -5931 632 410 259 71 0 24 chr11 25254769 25254811 -125528742 + L1MB7 LINE L1 5919 5959 -225 1378 167 56 0 chr11 25255116 25255386 -125528167 - L1MA4 LINE L1 -340 5960 5676 1657 176 0 0 chr11 25255390 25255692 -125527861 + L1MA4 LINE L1 5999 6300 0 22 35 0 0 chr11 25256083 25256112 -125527441 + AT_rich Low_complexity Low_complexity 1 29 0 187 315 169 42 chr11 25256556 25257036 -125526517 - L2 LINE L2 -738 2576 2036 3524 233 44 19 chr11 25257037 25258318 -125525235 + L1MB7 LINE L1 4875 6183 -1 428 290 32 38 chr11 25259021 25259207 -125524346 + MIR SINE MIR 23 207 -55 246 219 133 38 chr11 25260019 25260124 -125523429 + MIR SINE MIR 120 234 -28 210 37 0 0 chr11 25260160 25260187 -125523366 + (TC)n Simple_repeat Simple_repeat 2 28 0 345 24 0 0 chr11 25260187 25260229 -125523324 + (CA)n Simple_repeat Simple_repeat 1 42 0 345 306 82 55 chr11 25266130 25266313 -125517240 + MIR SINE MIR 67 254 -8 26 0 0 0 chr11 25266331 25266357 -125517196 + AT_rich Low_complexity Low_complexity 1 26 0 1868 127 3 14 chr11 25266541 25266848 -125516705 - AluSg1 SINE Alu 0 304 1 349 219 195 16 chr11 25267802 25267925 -125515628 - MIR3 SINE MIR -49 159 15 294 319 118 7 chr11 25268607 25268751 -125514802 + MIR SINE MIR 74 233 -29 28 29 0 0 chr11 25268862 25268897 -125514656 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr11 25268934 25268960 -125514593 + AT_rich Low_complexity Low_complexity 1 26 0 228 280 97 21 chr11 25269598 25269691 -125513862 + MIR SINE MIR 150 249 -13 21 95 0 0 chr11 25270068 25270131 -125513422 + AT_rich Low_complexity Low_complexity 1 63 0 234 323 32 11 chr11 25271278 25271371 -125512182 + MER5A DNA MER1_type 7 101 -88 40 0 0 0 chr11 25272130 25272170 -125511383 + AT_rich Low_complexity Low_complexity 1 40 0 596 309 51 6 chr11 25272208 25272386 -125511167 - MIR SINE MIR -75 187 2 27 0 0 0 chr11 25272846 25272873 -125510680 + AT_rich Low_complexity Low_complexity 1 27 0 263 371 113 10 chr11 25272873 25273067 -125510486 - MIR SINE MIR 0 262 49 242 99 50 58 chr11 25273592 25273713 -125509840 + (TA)n Simple_repeat Simple_repeat 2 121 0 22 35 0 0 chr11 25273846 25273875 -125509678 + AT_rich Low_complexity Low_complexity 1 29 0 207 232 146 12 chr11 25274158 25274240 -125509313 - MIR SINE MIR -46 216 124 657 212 116 83 chr11 25274599 25274754 -125508799 - MLT1J LTR MaLR -3 508 360 522 189 89 125 chr11 25274754 25275035 -125508518 + ORSL DNA AcHobo 5 275 0 657 212 116 83 chr11 25275035 25275181 -125508372 - MLT1J LTR MaLR -151 360 197 400 268 165 0 chr11 25275384 25275511 -125508042 + MER6B DNA MER2_type 2 149 -61 35 0 0 0 chr11 25275551 25275586 -125507967 + AT_rich Low_complexity Low_complexity 1 35 0 282 350 80 0 chr11 25276441 25276578 -125506975 - MIR3 SINE MIR -2 206 59 2230 95 0 25 chr11 25276904 25277219 -125506334 - AluSx SINE Alu -4 308 2 22 0 0 0 chr11 25277364 25277386 -125506167 + AT_rich Low_complexity Low_complexity 1 22 0 186 327 0 0 chr11 25279578 25279633 -125503920 - L2 LINE L2 -4 3268 3214 587 270 91 20 chr11 25279927 25280179 -125503374 + LTR16A1 LTR ERVL 188 457 0 346 302 47 30 chr11 25280179 25280348 -125503205 + MIR SINE MIR 36 207 -55 3391 113 69 26 chr11 25280480 25281089 -125502464 - LTR24C LTR ERV1 0 635 1 2500 58 0 3 chr11 25281366 25281675 -125501878 + AluY SINE Alu 1 308 -3 28 86 0 0 chr11 25281686 25281756 -125501797 + AT_rich Low_complexity Low_complexity 1 70 0 193 423 10 10 chr11 25282383 25282487 -125501066 - MIR SINE MIR -140 122 19 2337 158 49 7 chr11 25282873 25283321 -125500232 - MER101 LTR ERV1 0 474 8 602 126 0 0 chr11 25284949 25285036 -125498517 - MER70B LTR ERVL -2 576 490 2214 127 0 0 chr11 25285231 25285531 -125498022 + AluSx SINE Alu 1 300 -12 180 125 0 0 chr11 25286492 25286524 -125497029 + (T)n Simple_repeat Simple_repeat 1 32 0 22 70 0 0 chr11 25287443 25287486 -125496067 + AT_rich Low_complexity Low_complexity 1 43 0 25 51 0 0 chr11 25287697 25287736 -125495817 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr11 25288358 25288382 -125495171 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr11 25291541 25291563 -125491990 + AT_rich Low_complexity Low_complexity 1 22 0 288 0 0 0 chr11 25291730 25291762 -125491791 + (CA)n Simple_repeat Simple_repeat 1 32 0 266 256 83 33 chr11 25292418 25292539 -125491014 + MER103 DNA DNA 23 149 -17 628 39 0 0 chr11 25292672 25292750 -125490803 - L1PA4 LINE L1 -3 6152 6075 309 305 47 47 chr11 25293263 25293453 -125490100 + L2 LINE L2 3124 3313 0 277 344 120 50 chr11 25293814 25294355 -125489198 + L2 LINE L2 1699 2277 -1037 234 0 0 0 chr11 25294377 25294403 -125489150 + (TTA)n Simple_repeat Simple_repeat 2 27 0 22 56 0 0 chr11 25294604 25294640 -125488913 + AT_rich Low_complexity Low_complexity 1 36 0 2048 178 31 2 chr11 25294640 25295055 -125488498 - L1MA5 LINE L1 -6 6294 5868 451 305 170 27 chr11 25295064 25295323 -125488230 + L2 LINE L2 2298 2593 -721 520 273 130 60 chr11 25295346 25295793 -125487760 - L1MC5 LINE L1 -32 7929 7452 207 218 0 0 chr11 25297582 25297637 -125485916 + (TA)n Simple_repeat Simple_repeat 2 56 0 212 266 16 38 chr11 25297693 25297877 -125485676 + (TA)n Simple_repeat Simple_repeat 1 180 0 12875 165 25 18 chr11 25298277 25300676 -125482877 - Tigger1 DNA MER2_type -1 2417 1 719 229 48 0 chr11 25301580 25301768 -125481785 + L1MC4a LINE L1 4920 5116 -1030 363 206 305 0 chr11 25301769 25301900 -125481653 + L1MB7 LINE L1 6005 6175 -9 206 268 18 0 chr11 25301952 25302008 -125481545 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 303 351 109 14 chr11 25302008 25302293 -125481260 + L1MC4a LINE L1 5597 5908 -1900 22 0 0 0 chr11 25302447 25302469 -125481084 + AT_rich Low_complexity Low_complexity 1 22 0 303 326 16 0 chr11 25302630 25302759 -125480794 - MER94 DNA DNA -3 131 1 223 284 0 30 chr11 25303172 25303239 -125480314 + MIR SINE MIR 192 256 -6 1533 221 0 49 chr11 25303594 25303983 -125479570 + MLT1A2 LTR MaLR 1 370 -4 2287 111 0 0 chr11 25304309 25304616 -125478937 + AluSq SINE Alu 1 307 -6 22 0 0 0 chr11 25306550 25306572 -125476981 + AT_rich Low_complexity Low_complexity 1 22 0 2026 119 0 4 chr11 25306906 25307184 -125476369 + AluSx SINE Alu 30 306 -6 1593 200 13 13 chr11 25307296 25307611 -125475942 - LTR38 LTR ERV1 0 556 242 9386 184 27 27 chr11 25307630 25310246 -125473307 - L1PA13 LINE L1 -13 6150 3535 234 0 0 0 chr11 25310246 25310272 -125473281 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 9386 184 27 27 chr11 25310272 25310302 -125473251 - L1PA13 LINE L1 -2628 3535 3506 306 0 0 0 chr11 25310302 25310336 -125473217 + (TGG)n Simple_repeat Simple_repeat 1 34 0 9386 184 27 27 chr11 25310336 25310517 -125473036 - L1PA13 LINE L1 -2656 3507 3322 5199 172 28 10 chr11 25310517 25312059 -125471494 + L1PA15 LINE L1 4606 6161 -4 4177 183 30 8 chr11 25312273 25313106 -125470447 - Tigger3b DNA MER2_type -379 852 2 219 351 27 54 chr11 25313862 25314047 -125469506 - L3 LINE CR1 -135 1442 1263 867 185 0 25 chr11 25314132 25314294 -125469259 + FRAM SINE Alu 2 159 -17 1426 204 35 32 chr11 25314556 25314959 -125468594 + L1MB8 LINE L1 5774 6177 -1 276 255 0 11 chr11 25315618 25315712 -125467841 + L1M4 LINE L1 3909 4001 -2145 277 296 113 12 chr11 25315847 25316087 -125467466 + L1M4 LINE L1 4182 4445 -1701 38 75 0 0 chr11 25316237 25316317 -125467236 + AT_rich Low_complexity Low_complexity 1 80 0 195 167 0 0 chr11 25316469 25316511 -125467042 + (TA)n Simple_repeat Simple_repeat 1 42 0 23 33 0 0 chr11 25317117 25317147 -125466406 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr11 25318032 25318054 -125465499 + AT_rich Low_complexity Low_complexity 1 22 0 391 333 99 39 chr11 25318149 25318585 -125464968 + L3 LINE CR1 823 1284 -293 273 304 112 0 chr11 25318587 25318712 -125464841 + MIR SINE MIR 124 262 0 1803 152 7 14 chr11 25319032 25319328 -125464225 + AluJo SINE Alu 1 294 -18 23 33 0 0 chr11 25321047 25321077 -125462476 + AT_rich Low_complexity Low_complexity 1 30 0 285 261 14 0 chr11 25321120 25321189 -125462364 + MLT2B3 LTR ERVL 1 70 -484 2265 206 16 56 chr11 25321287 25321786 -125461767 + MLT2B3 LTR ERVL 76 554 0 1032 216 33 118 chr11 25321920 25322318 -125461235 + MLT1A1 LTR MaLR 1 364 -1 1202 82 0 12 chr11 25323278 25323448 -125460105 + L1PA7 LINE L1 5959 6126 -28 277 309 41 0 chr11 25323893 25323990 -125459563 - MER5B DNA MER1_type -9 169 69 195 318 157 37 chr11 25324087 25324304 -125459249 - L2 LINE L2 -683 2631 2389 346 336 47 23 chr11 25324424 25324552 -125459001 - L2 LINE L2 -8 3264 3134 34 0 0 0 chr11 25324692 25324726 -125458827 + AT_rich Low_complexity Low_complexity 1 34 0 2347 72 0 25 chr11 25324835 25325181 -125458372 + L1PA7 LINE L1 5824 6161 0 32 0 0 0 chr11 25325509 25325541 -125458012 + AT_rich Low_complexity Low_complexity 1 32 0 2304 77 0 29 chr11 25325911 25326223 -125457330 + AluY SINE Alu 1 303 -8 185 327 88 26 chr11 25326699 25326812 -125456741 - L2 LINE L2 -4 3309 3190 192 275 66 33 chr11 25327256 25327347 -125456206 - MIR3 SINE MIR -28 180 87 768 234 8 51 chr11 25329364 25329620 -125453933 + L1M4b LINE L1 1358 1602 -5257 25 0 0 0 chr11 25329627 25329652 -125453901 + AT_rich Low_complexity Low_complexity 1 25 0 1263 117 6 0 chr11 25329658 25329838 -125453715 - AluSc SINE Alu 0 309 129 198 103 0 0 chr11 25329842 25329871 -125453682 + (TG)n Simple_repeat Simple_repeat 2 30 0 261 278 0 0 chr11 25329873 25329963 -125453590 + L1MC4 LINE L1 6614 6703 -1339 207 0 0 0 chr11 25329963 25329986 -125453567 + (CA)n Simple_repeat Simple_repeat 2 24 0 353 261 11 0 chr11 25330119 25330207 -125453346 + L1MC4 LINE L1 6614 6702 -1340 934 114 0 0 chr11 25330230 25330353 -125453200 - AluSc SINE Alu -186 123 1 1737 273 46 30 chr11 25330380 25331139 -125452414 + L1M4b LINE L1 1623 2393 -4566 894 239 71 34 chr11 25331187 25331360 -125452193 + L1M4b LINE L1 2950 3115 -3842 1502 137 26 0 chr11 25331360 25331586 -125451967 + AluSg/x SINE Alu 71 302 -10 894 239 71 34 chr11 25331586 25331778 -125451775 + L1M4b LINE L1 3115 3325 -3632 24 0 0 0 chr11 25331839 25331863 -125451690 + AT_rich Low_complexity Low_complexity 1 24 0 384 255 32 0 chr11 25332635 25332729 -125450824 - MER5A DNA MER1_type -83 106 10 30 27 0 0 chr11 25333059 25333096 -125450457 + AT_rich Low_complexity Low_complexity 1 37 0 180 216 0 0 chr11 25333775 25333812 -125449741 + L3 LINE CR1 1114 1150 -427 275 303 34 3 chr11 25334033 25334128 -125449425 - MIR SINE MIR -64 144 75 * 367 382 50 28 chr11 25334123 25334482 -125449071 + L3 LINE CR1 1208 1574 -3 21 71 0 0 chr11 25335453 25335495 -125448058 + AT_rich Low_complexity Low_complexity 1 42 0 245 281 164 20 chr11 25336543 25336689 -125446864 + MIR SINE MIR 47 213 -49 23 0 0 0 chr11 25337071 25337094 -125446459 + AT_rich Low_complexity Low_complexity 1 23 0 1138 29 0 0 chr11 25337094 25337230 -125446323 - L1PA4 LINE L1 -3 6152 6017 1111 35 18 29 chr11 25337262 25337346 -125446207 + (TTTC)n Simple_repeat Simple_repeat 1 252 0 1111 35 18 29 chr11 25337346 25337517 -125446036 + (TTTC)n Simple_repeat Simple_repeat 2 170 0 200 255 0 0 chr11 25337625 25337676 -125445877 + (TG)n Simple_repeat Simple_repeat 1 51 0 1639 191 112 56 chr11 25337733 25338216 -125445337 - MER67D LTR ERV1 -4 510 1 215 154 26 0 chr11 25338399 25338438 -125445115 + GA-rich Low_complexity Low_complexity 4 43 0 255 321 128 20 chr11 25338801 25338997 -125444556 - MIR SINE MIR -37 225 9 2263 110 0 7 chr11 25339345 25339655 -125443898 + AluSg SINE Alu 3 310 0 26 50 0 0 chr11 25340112 25340152 -125443401 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr11 25340525 25340547 -125443006 + AT_rich Low_complexity Low_complexity 1 22 0 268 292 0 95 chr11 25340878 25341015 -125442538 - MIR SINE MIR -28 234 111 363 306 35 29 chr11 25341068 25341241 -125442312 - MLT1J LTR MaLR -21 490 317 2454 137 57 26 chr11 25341686 25342146 -125441407 + L1PA16 LINE L1 5682 6155 -11 1687 175 0 0 chr11 25344601 25344928 -125438625 + AluSx SINE Alu 1 327 0 380 328 59 46 chr11 25344950 25345188 -125438365 - MIR SINE MIR -8 254 14 234 0 0 0 chr11 25345512 25345538 -125438015 + (T)n Simple_repeat Simple_repeat 1 26 0 252 0 0 0 chr11 25345953 25345981 -125437572 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 244 218 36 36 chr11 25346333 25346443 -125437110 + (CATATA)n Simple_repeat Simple_repeat 2 111 0 2224 75 0 30 chr11 25346919 25347224 -125436329 - AluY SINE Alu -15 296 1 188 252 97 68 chr11 25347266 25347369 -125436184 - L2 LINE L2 -1 3312 3207 189 280 144 16 chr11 25347559 25347684 -125435869 - L3b LINE CR1 -173 1410 1270 221 356 59 0 chr11 25348127 25348228 -125435325 - MIR SINE MIR -31 231 125 21 0 0 0 chr11 25350211 25350232 -125433321 + AT_rich Low_complexity Low_complexity 1 21 0 312 369 36 0 chr11 25350876 25350987 -125432566 - L2 LINE L2 -8 3264 3150 245 286 20 0 chr11 25351262 25351360 -125432193 + T-rich Low_complexity Low_complexity 3 102 0 22 0 0 0 chr11 25351862 25351884 -125431669 + AT_rich Low_complexity Low_complexity 1 22 0 292 279 152 19 chr11 25351898 25352056 -125431497 - MIR SINE MIR 0 262 84 183 254 16 32 chr11 25352522 25352585 -125430968 + MIR SINE MIR 155 216 -46 255 214 83 24 chr11 25352594 25352678 -125430875 + MIR3 SINE MIR 119 207 -1 801 208 0 11 chr11 25353487 25353665 -125429888 - L1MA6 LINE L1 -1 6299 6124 724 204 13 13 chr11 25354177 25354329 -125429224 + FRAM SINE Alu 1 152 -24 287 328 22 0 chr11 25354840 25354969 -125428584 + MIR SINE MIR 45 180 -28 22 56 0 0 chr11 25355033 25355069 -125428484 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr11 25356554 25356577 -125426976 + AT_rich Low_complexity Low_complexity 1 23 0 863 255 99 57 chr11 25356665 25356744 -125426809 - MLT1G1 LTR MaLR -205 390 316 353 303 9 0 chr11 25356744 25356853 -125426700 - MER81 DNA DNA -2 112 3 863 255 99 57 chr11 25356853 25357145 -125426408 - MLT1G1 LTR MaLR -279 316 3 205 330 66 11 chr11 25357159 25357250 -125426303 + L2 LINE L2 3199 3294 -19 202 364 30 10 chr11 25358059 25358158 -125425395 + L2 LINE L2 1459 1559 -1755 1851 307 50 38 chr11 25358282 25359230 -125424323 + L2 LINE L2 1807 2832 -482 384 253 20 0 chr11 25360123 25360273 -125423280 + (CA)n Simple_repeat Simple_repeat 2 154 0 1754 183 54 6 chr11 25360290 25360639 -125422914 - MLT2D LTR ERVL -48 366 1 212 288 0 61 chr11 25361341 25361407 -125422146 - MIR SINE MIR -113 149 88 450 75 0 0 chr11 25362275 25362342 -125421211 + (TG)n Simple_repeat Simple_repeat 2 68 0 564 100 0 0 chr11 25363384 25363464 -125420089 + MADE1 DNA Mariner 1 80 0 217 317 49 41 chr11 25364989 25365112 -125418441 - L2 LINE L2 -290 2982 2859 23 33 0 0 chr11 25365263 25365293 -125418260 + AT_rich Low_complexity Low_complexity 1 30 0 327 338 60 48 chr11 25365481 25365795 -125417758 + MLT1L LTR MaLR 210 527 -88 341 355 101 5 chr11 25366011 25366228 -125417325 - MIR SINE MIR -6 256 19 216 0 0 0 chr11 25366333 25366357 -125417196 + (CA)n Simple_repeat Simple_repeat 2 25 0 183 156 0 0 chr11 25366898 25366930 -125416623 + CT-rich Low_complexity Low_complexity 64 95 0 2049 128 3 7 chr11 25370709 25371006 -125412547 + AluSx SINE Alu 3 298 -14 182 172 0 0 chr11 25371011 25371040 -125412513 - L2 LINE L2 -15 3257 3229 1118 185 164 91 chr11 25372895 25373065 -125410488 + MLT1C LTR MaLR 20 176 -291 420 20 0 0 chr11 25373065 25373114 -125410439 + (CA)n Simple_repeat Simple_repeat 2 50 0 1118 185 164 91 chr11 25373114 25373359 -125410194 + MLT1C LTR MaLR 176 465 -2 455 250 78 88 chr11 25373779 25374015 -125409538 + MLT1E2 LTR MaLR 54 254 -372 285 197 0 0 chr11 25374128 25374189 -125409364 + (TA)n Simple_repeat Simple_repeat 1 61 0 312 170 0 100 chr11 25374196 25374296 -125409257 - L1MC4 LINE L1 -1339 6703 6614 276 30 0 0 chr11 25374296 25374329 -125409224 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr11 25374601 25374622 -125408931 + AT_rich Low_complexity Low_complexity 1 21 0 273 365 26 0 chr11 25376208 25376323 -125407230 - L2 LINE L2 0 3272 3155 27 0 0 0 chr11 25376342 25376369 -125407184 + AT_rich Low_complexity Low_complexity 1 27 0 379 328 16 0 chr11 25376492 25376614 -125406939 + MIR SINE MIR 8 131 -131 25 0 0 0 chr11 25377455 25377480 -125406073 + AT_rich Low_complexity Low_complexity 1 25 0 1549 222 49 2 chr11 25377509 25377986 -125405567 - L1MA9 LINE L1 -2 6310 5782 255 173 0 0 chr11 25377988 25378040 -125405513 + (TA)n Simple_repeat Simple_repeat 1 52 0 540 226 0 0 chr11 25378094 25378187 -125405366 + Tigger5 DNA MER2_type 2 94 -2229 914 155 126 0 chr11 25378204 25378378 -125405175 + Tigger5 DNA MER2_type 2123 2318 -5 2211 226 29 27 chr11 25378433 25379447 -125404106 - L1MA9 LINE L1 -538 5774 4758 2934 267 52 42 chr11 25380063 25380455 -125403098 + L1M4b LINE L1 425 811 -6048 2178 115 3 13 chr11 25380455 25380769 -125402784 + AluSx SINE Alu 1 311 -1 2934 267 52 42 chr11 25380769 25381433 -125402120 + L1M4b LINE L1 811 1492 -5367 1589 162 4 0 chr11 25381681 25381934 -125401619 + AluSx SINE Alu 8 261 -51 256 64 43 0 chr11 25382062 25382109 -125401444 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 201 348 170 9 chr11 25382183 25382295 -125401258 - L2 LINE L2 -2 3270 3141 190 301 60 0 chr11 25382321 25382404 -125401149 - MIR SINE MIR -41 221 134 221 56 0 28 chr11 25382635 25382671 -125400882 + (CAT)n Simple_repeat Simple_repeat 3 37 0 316 253 58 58 chr11 25382676 25382830 -125400723 - MIR SINE MIR -12 250 97 340 336 138 23 chr11 25383000 25383354 -125400199 - L2 LINE L2 -601 2713 2319 512 357 119 31 chr11 25385183 25385949 -125397604 + L2 LINE L2 2431 3279 -34 3656 211 40 63 chr11 25386101 25387413 -125396140 - L1MD1 LINE L1 -3 6633 5360 292 119 34 0 chr11 25387458 25387517 -125396036 + (TG)n Simple_repeat Simple_repeat 2 62 0 1023 276 47 3 chr11 25387522 25387902 -125395651 - L1MD1 LINE L1 -1201 5339 4943 572 292 29 5 chr11 25387905 25388114 -125395439 - L1MD1 LINE L1 -3393 3147 2934 3971 237 115 49 chr11 25388146 25388549 -125395004 - L1MD1 LINE L1 -5052 1488 1113 1800 143 3 20 chr11 25388549 25388842 -125394711 + AluSx SINE Alu 1 288 -24 3971 237 115 49 chr11 25388842 25388861 -125394692 - L1MD1 LINE L1 -5427 1113 1097 194 0 0 37 chr11 25388861 25388888 -125394665 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 3971 237 115 49 chr11 25388888 25389842 -125393711 - L1MD1 LINE L1 -5443 1097 21 1539 199 4 18 chr11 25390016 25390339 -125393214 - AluJo SINE Alu 0 324 6 1536 194 71 9 chr11 25390610 25390934 -125392619 + MER2 DNA MER2_type 1 344 0 765 213 171 4 chr11 25392984 25393144 -125390409 - AluJb SINE Alu -33 279 147 2031 70 17 17 chr11 25393144 25393443 -125390110 - L1PA3 LINE L1 -5 6150 5852 765 213 171 4 chr11 25393443 25393521 -125390032 - AluJb SINE Alu -165 147 1 362 302 7 47 chr11 25393625 25393774 -125389779 + MIR SINE MIR 49 183 -72 2060 114 0 10 chr11 25394575 25394872 -125388681 + AluSx SINE Alu 2 295 -17 252 289 96 10 chr11 25395074 25395178 -125388375 - MIR SINE MIR -75 187 75 195 146 0 0 chr11 25395889 25395930 -125387623 + (TTA)n Simple_repeat Simple_repeat 1 41 0 1545 194 17 31 chr11 25396069 25396420 -125387133 + L1MA9 LINE L1 5819 6164 -148 201 39 0 0 chr11 25396433 25396459 -125387094 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 608 129 68 27 chr11 25396481 25396628 -125386925 + L1MA9 LINE L1 6159 6311 -1 324 287 132 7 chr11 25397069 25397205 -125386348 + MIR SINE MIR 67 219 -43 354 143 0 0 chr11 25399236 25399299 -125384254 + (CA)n Simple_repeat Simple_repeat 1 63 0 1979 146 7 0 chr11 25399614 25399923 -125383630 - AluSx SINE Alu -1 311 1 1587 214 28 3 chr11 25400152 25400516 -125383037 - L1PB4 LINE L1 -2 6154 5782 227 113 97 0 chr11 25400523 25400585 -125382968 + (TA)n Simple_repeat Simple_repeat 1 68 0 1672 146 2 11 chr11 25400585 25400874 -125382679 - L1ME LINE L1 -345 5817 5542 6979 215 36 30 chr11 25400981 25402816 -125380737 - L1PB4 LINE L1 -852 5294 3449 21 36 0 0 chr11 25404829 25404857 -125378696 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr11 25404868 25404894 -125378659 + (TG)n Simple_repeat Simple_repeat 2 27 0 385 278 52 9 chr11 25404960 25405075 -125378478 + MIR SINE MIR 20 139 -123 908 169 0 0 chr11 25405963 25406123 -125377430 + L1PB4 LINE L1 5997 6156 0 180 0 0 0 chr11 25406350 25406370 -125377183 + (TG)n Simple_repeat Simple_repeat 2 21 0 538 269 149 25 chr11 25407304 25407505 -125376048 + MIR SINE MIR 5 230 -32 31 26 0 0 chr11 25407870 25407908 -125375645 + AT_rich Low_complexity Low_complexity 1 38 0 3706 177 57 32 chr11 25408090 25409049 -125374504 + MER11C LTR ERVK 1 1071 0 22 0 0 0 chr11 25409258 25409280 -125374273 + AT_rich Low_complexity Low_complexity 1 22 0 312 318 126 9 chr11 25409585 25409799 -125373754 + L1M4 LINE L1 3109 3347 -2799 2183 109 3 0 chr11 25410375 25410679 -125372874 - AluSq SINE Alu -8 305 1 994 223 103 4 chr11 25410943 25411216 -125372337 - MER67D LTR ERV1 -213 301 2 396 167 0 0 chr11 25411941 25412037 -125371516 + (TA)n Simple_repeat Simple_repeat 2 97 0 1068 203 0 5 chr11 25412041 25412233 -125371320 - AluJo SINE Alu -121 191 1 2077 110 14 0 chr11 25412925 25413206 -125370347 - AluSc SINE Alu -24 285 1 811 255 51 1 chr11 25413272 25413498 -125370055 - L1MC3 LINE L1 -203 6141 5981 1047 213 199 42 chr11 25413648 25414051 -125369502 - MER31B LTR ERV1 0 466 1 1000 99 0 105 chr11 25414145 25414316 -125369237 + AluSx SINE Alu 1 153 -159 480 298 84 71 chr11 25414788 25415110 -125368443 - L3 LINE CR1 -60 1517 1192 281 235 15 15 chr11 25466397 25466465 -125317088 - MER39 LTR ERV1 -380 327 260 25 31 0 0 chr11 25467204 25467236 -125316317 + AT_rich Low_complexity Low_complexity 1 32 0 2898 260 34 20 chr11 25467662 25468681 -125314872 + L1MB7 LINE L1 5141 6176 -8 2849 258 14 33 chr11 25469010 25470027 -125313526 + L1 LINE L1 3305 4301 -1845 1542 209 36 3 chr11 25470128 25470492 -125313061 - L1 LINE L1 -1678 4468 4093 4164 147 10 13 chr11 25470492 25471165 -125312388 + L1P3 LINE L1 11 681 -5780 573 305 114 35 chr11 25471378 25471654 -125311899 - L2 LINE L2 -1529 1785 1476 1753 211 11 11 chr11 25471654 25472019 -125311534 + MLT1A1 LTR MaLR 1 365 0 573 305 114 35 chr11 25472019 25472083 -125311470 - L2 LINE L2 -1838 1476 1418 262 353 22 43 chr11 25472338 25472522 -125311031 - LTR33 LTR ERVL -321 200 21 425 268 35 30 chr11 25472578 25472776 -125310777 + MLT2B1 LTR ERVL 2 200 -320 21 57 0 0 chr11 25473020 25473055 -125310498 + AT_rich Low_complexity Low_complexity 1 35 0 2027 127 3 0 chr11 25473242 25473534 -125310019 + AluSc SINE Alu 1 293 -16 1874 272 92 8 chr11 25473544 25474187 -125309366 + L1PBa LINE L1 128 824 -6039 5384 153 15 9 chr11 25474287 25475444 -125308109 + L1P3 LINE L1 4426 5589 -583 2334 50 0 3 chr11 25475605 25475931 -125307622 + AluY SINE Alu 1 325 0 406 254 19 51 chr11 25476467 25476576 -125306977 - MER31A LTR ERV1 0 543 432 1495 178 68 29 chr11 25476576 25476857 -125306696 + AluJb SINE Alu 1 292 -20 406 254 19 51 chr11 25476857 25476961 -125306592 - MER31A LTR ERV1 -111 432 263 6642 68 11 2 chr11 25477070 25478688 -125304865 + L1PA7 LINE L1 4521 6150 -4 25 31 0 0 chr11 25478720 25478752 -125304801 + AT_rich Low_complexity Low_complexity 1 32 0 645 223 56 9 chr11 25478771 25478986 -125304567 - L1 LINE L1 -2041 4105 3881 1033 315 130 31 chr11 25479445 25479647 -125303906 + L1MC4 LINE L1 6444 6625 -1417 265 24 48 0 chr11 25479647 25479689 -125303864 + (CATAT)n Simple_repeat Simple_repeat 2 45 0 1033 315 130 31 chr11 25479689 25480723 -125302830 + L1MC4 LINE L1 6625 7904 -138 219 167 0 0 chr11 25480742 25480784 -125302769 + (TATG)n Simple_repeat Simple_repeat 2 43 0 323 313 35 9 chr11 25480820 25480935 -125302618 + L1MC4 LINE L1 6615 6732 -1310 180 152 0 0 chr11 25480967 25481000 -125302553 + GA-rich Low_complexity Low_complexity 2 34 0 407 280 33 101 chr11 25481145 25481452 -125302101 - L1 LINE L1 -2609 3537 3252 372 330 104 31 chr11 25481577 25481865 -125301688 - L1M4 LINE L1 -1886 4260 3952 1975 168 28 33 chr11 25481879 25482243 -125301310 - THE1B LTR MaLR -2 362 1 10368 120 29 3 chr11 25482243 25483783 -125299770 - THE1B-int LTR MaLR 0 1580 1 2047 124 59 36 chr11 25483783 25484139 -125299414 - THE1B LTR MaLR 0 364 1 240 274 147 49 chr11 25484292 25485196 -125298357 - L1M4 LINE L1 -2369 3777 2785 44 88 0 0 chr11 25485470 25485584 -125297969 + AT_rich Low_complexity Low_complexity 1 114 0 401 275 81 12 chr11 25485584 25485744 -125297809 - L1M4 LINE L1 -3726 2420 2250 460 309 39 15 chr11 25486362 25486566 -125296987 - MLT1A1 LTR MaLR -13 352 144 1607 240 14 25 chr11 25487147 25487514 -125296039 - MLT1A2 LTR MaLR -11 363 1 21 57 0 0 chr11 25487575 25487610 -125295943 + AT_rich Low_complexity Low_complexity 1 35 0 300 237 48 145 chr11 25487886 25488072 -125295481 - MER5B DNA MER1_type -8 170 3 268 318 64 0 chr11 25489504 25489614 -125293939 + MIR SINE MIR 124 240 -22 384 321 130 16 chr11 25490424 25490608 -125292945 + MIR SINE MIR 58 262 0 1142 264 83 13 chr11 25491548 25491934 -125291619 - L1MC4 LINE L1 -253 7789 7377 24 67 0 0 chr11 25492106 25492151 -125291402 + AT_rich Low_complexity Low_complexity 1 45 0 224 300 70 75 chr11 25492193 25492420 -125291133 - MIR SINE MIR -35 227 2 278 384 23 0 chr11 25492747 25492880 -125290673 + MIR3 SINE MIR 28 163 -45 3184 112 0 0 chr11 25492912 25493387 -125290166 - L1PA8 LINE L1 -932 5214 4740 6639 84 3 1 chr11 25493387 25494357 -125289196 + L1PA8 LINE L1 5191 6162 -10 428 171 12 0 chr11 25495361 25495443 -125288110 + AluS SINE Alu 1 83 -230 2000 138 0 22 chr11 25495486 25495798 -125287755 - AluSx SINE Alu -7 305 1 345 115 115 26 chr11 25495858 25495936 -125287617 - MER2 DNA MER2_type -138 207 123 1172 82 33 49 chr11 25495944 25496128 -125287425 + L1PA8 LINE L1 5992 6172 0 449 153 14 0 chr11 25496977 25497049 -125286504 - MER2 DNA MER2_type -225 120 48 396 0 0 0 chr11 25497066 25497110 -125286443 + (TG)n Simple_repeat Simple_repeat 1 44 0 203 400 65 6 chr11 25497326 25497496 -125286057 + L2 LINE L2 2904 3083 -189 214 365 141 5 chr11 25497717 25497909 -125285644 + MIR SINE MIR 45 262 0 22 0 0 0 chr11 25497948 25497970 -125285583 + AT_rich Low_complexity Low_complexity 1 22 0 268 342 8 0 chr11 25498292 25498409 -125285144 + L1MC4 LINE L1 6895 7012 -1030 1971 128 3 0 chr11 25498417 25498705 -125284848 + AluSx SINE Alu 1 289 -23 23 0 0 0 chr11 25498705 25498728 -125284825 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr11 25498798 25498838 -125284715 + AT_rich Low_complexity Low_complexity 1 40 0 2357 125 22 22 chr11 25499086 25499212 -125284341 - L1PA14 LINE L1 0 6161 6036 2313 62 3 26 chr11 25499212 25499517 -125284036 - AluY SINE Alu -13 298 1 2357 125 22 22 chr11 25499517 25499797 -125283756 - L1PA14 LINE L1 -124 6037 5755 1505 243 36 90 chr11 25499834 25500423 -125283130 - MER92B LTR ERV1 -77 559 3 23 0 0 0 chr11 25500498 25500521 -125283032 + AT_rich Low_complexity Low_complexity 1 23 0 264 197 13 26 chr11 25501228 25501304 -125282249 + L1ME3 LINE L1 42 116 -5954 726 316 18 18 chr11 25501390 25501668 -125281885 + MLT1H LTR MaLR 1 278 -271 23 78 0 0 chr11 25501825 25501876 -125281677 + AT_rich Low_complexity Low_complexity 1 51 0 514 275 100 46 chr11 25501948 25502337 -125281216 + L1ME3 LINE L1 3437 3846 -2234 274 223 175 19 chr11 25502365 25502468 -125281085 - MLT1F LTR MaLR -16 526 408 1962 47 63 4 chr11 25502491 25502777 -125280776 - AluY SINE Alu 0 313 13 390 274 144 5 chr11 25503167 25503382 -125280171 + L1ME3 LINE L1 3942 4186 -1894 551 294 90 22 chr11 25503417 25503784 -125279769 + L1ME3 LINE L1 4376 4767 -1313 24 32 0 0 chr11 25503787 25503818 -125279735 + AT_rich Low_complexity Low_complexity 1 31 0 1980 129 82 18 chr11 25504037 25504379 -125279174 - THE1B LTR MaLR 0 364 1 2017 138 3 0 chr11 25504438 25504729 -125278824 + AluSx SINE Alu 1 292 -20 1252 280 73 19 chr11 25504810 25505346 -125278207 + L1ME3 LINE L1 5198 5762 -334 1529 174 3 24 chr11 25505346 25505634 -125277919 + AluJo SINE Alu 1 282 -30 1576 190 3 7 chr11 25506136 25506425 -125277128 + AluJb SINE Alu 1 288 -24 247 308 76 26 chr11 25506456 25506797 -125276756 + L1MC/D LINE L1 4072 4429 -1717 326 297 109 38 chr11 25506829 25507142 -125276411 + L1MC/D LINE L1 4498 4832 -1314 205 200 0 0 chr11 25507251 25507291 -125276262 + (TA)n Simple_repeat Simple_repeat 1 40 0 414 235 61 62 chr11 25507508 25507553 -125276000 + L1MC/D LINE L1 5254 5298 -942 1569 195 19 75 chr11 25507553 25507964 -125275589 + MLT1B LTR MaLR 1 388 -2 414 235 61 62 chr11 25507964 25508183 -125275370 + L1MC/D LINE L1 5298 5514 -726 375 98 0 0 chr11 25508257 25508318 -125275235 + L1MA3 LINE L1 6245 6305 0 23 0 0 0 chr11 25508999 25509022 -125274531 + AT_rich Low_complexity Low_complexity 1 23 0 222 250 188 18 chr11 25509148 25509260 -125274293 + MIR SINE MIR 14 144 -118 238 261 43 14 chr11 25509267 25509336 -125274217 - MIR SINE MIR -52 210 140 200 312 128 16 chr11 25509876 25510001 -125273552 - MIR SINE MIR -45 217 79 209 179 0 0 chr11 25510158 25510197 -125273356 + (CA)n Simple_repeat Simple_repeat 2 40 0 390 346 35 48 chr11 25510249 25510477 -125273076 + L2 LINE L2 2560 2784 -530 834 113 127 7 chr11 25510617 25510767 -125272786 - THE1B LTR MaLR 0 364 197 345 347 111 11 chr11 25511667 25511857 -125271696 - MIR SINE MIR -22 240 32 288 130 0 0 chr11 25511964 25512010 -125271543 + (TGG)n Simple_repeat Simple_repeat 1 46 0 292 267 183 8 chr11 25512078 25512198 -125271355 - MIR SINE MIR -73 189 49 341 282 195 40 chr11 25514276 25514425 -125269128 - MER5A DNA MER1_type -8 181 10 345 284 99 0 chr11 25514772 25514913 -125268640 - MIR SINE MIR -23 239 85 1354 187 40 31 chr11 25515400 25515726 -125267827 + L1MA8 LINE L1 5791 6119 -172 715 251 0 0 chr11 25516027 25516206 -125267347 + L1PA8 LINE L1 5984 6162 -10 371 318 8 39 chr11 25516621 25516750 -125266803 - MER5B DNA MER1_type -49 129 5 271 309 55 27 chr11 25517261 25517371 -125266182 - MIR SINE MIR -64 144 32 22 80 0 0 chr11 25517598 25517648 -125265905 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr11 25517942 25517964 -125265589 + AT_rich Low_complexity Low_complexity 1 22 0 319 317 67 0 chr11 25518247 25518367 -125265186 - L2 LINE L2 0 3313 3186 485 339 27 42 chr11 25519189 25519265 -125264288 + MIR SINE MIR 4 80 -182 2279 71 0 0 chr11 25519265 25519582 -125263971 - AluY SINE Alu 0 317 1 485 339 27 42 chr11 25519582 25519764 -125263789 + MIR SINE MIR 80 259 -3 216 209 0 0 chr11 25520746 25520789 -125262764 + (TA)n Simple_repeat Simple_repeat 2 44 0 348 94 0 0 chr11 25522211 25522264 -125261289 + (TG)n Simple_repeat Simple_repeat 2 54 0 296 253 33 22 chr11 25522492 25522583 -125260970 - MER5A DNA MER1_type 0 189 98 289 314 64 69 chr11 25522558 25522762 -125260791 + L2 LINE L2 2753 2955 -359 * 26 0 0 0 chr11 25522881 25522907 -125260646 + AT_rich Low_complexity Low_complexity 1 26 0 27 22 0 22 chr11 25524085 25524103 -125259450 + AT_rich Low_complexity Low_complexity 1 18 -26 2319 38 42 10 chr11 25524103 25524391 -125259162 - AluY SINE Alu -14 297 1 27 22 0 22 chr11 25524391 25524417 -125259136 + AT_rich Low_complexity Low_complexity 18 44 0 21 36 0 0 chr11 25525643 25525671 -125257882 + AT_rich Low_complexity Low_complexity 1 28 0 2369 94 0 7 chr11 25525901 25526209 -125257344 - AluSp SINE Alu -3 310 5 2219 93 0 3 chr11 25526224 25526514 -125257039 - AluY SINE Alu -22 289 1 717 357 116 13 chr11 25526622 25527322 -125256231 + L2 LINE L2 2551 3313 0 218 354 58 49 chr11 25528148 25528371 -125255182 - MIR SINE MIR -17 245 21 30 0 0 0 chr11 25528399 25528429 -125255124 + AT_rich Low_complexity Low_complexity 1 30 0 232 343 15 0 chr11 25528957 25529024 -125254529 - L2 LINE L2 0 3313 3246 196 321 83 0 chr11 25529797 25529881 -125253672 - MIR SINE MIR -61 201 111 1404 181 37 28 chr11 25530395 25530721 -125252832 + L1MA8 LINE L1 5791 6119 -172 307 341 132 49 chr11 25532222 25532609 -125250944 + L3 LINE CR1 1086 1504 -73 207 0 0 0 chr11 25533182 25533205 -125250348 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 22 56 0 0 chr11 25533237 25533273 -125250280 + AT_rich Low_complexity Low_complexity 1 36 0 32 86 0 0 chr11 25533289 25533370 -125250183 + AT_rich Low_complexity Low_complexity 1 81 0 486 0 0 0 chr11 25533444 25533498 -125250055 + (TTCC)n Simple_repeat Simple_repeat 2 55 0 205 196 0 54 chr11 25533617 25533673 -125249880 + MIR SINE MIR 209 261 -1 356 296 45 22 chr11 25534112 25534291 -125249262 - MIR SINE MIR -4 258 76 308 324 27 18 chr11 25535620 25535731 -125247822 + MER5A DNA MER1_type 75 186 -3 1339 218 71 67 chr11 25535970 25536406 -125247147 - MER74A LTR ERVL 0 558 121 223 325 86 0 chr11 25537753 25537870 -125245683 + MIR SINE MIR 78 204 -58 2320 128 8 3 chr11 25538394 25538761 -125244792 - L1PB1 LINE L1 0 6867 6499 779 137 12 8 chr11 25538797 25539040 -125244513 + (TA)n Simple_repeat Simple_repeat 1 244 0 14092 197 21 14 chr11 25539040 25542627 -125240926 - L1PB1 LINE L1 -360 6507 2882 1995 143 0 3 chr11 25542627 25542948 -125240605 - AluSx SINE Alu 0 312 5 14092 197 21 14 chr11 25542948 25543246 -125240307 - L1PB1 LINE L1 -3985 2882 2588 18429 130 132 90 chr11 25543346 25547598 -125235955 - L1P LINE L1 -1705 4441 13 4986 178 46 15 chr11 25547598 25549606 -125233947 + L1PB4 LINE L1 4093 6151 -5 422 143 13 0 chr11 25549786 25549863 -125233690 + (TA)n Simple_repeat Simple_repeat 2 79 0 24 0 0 0 chr11 25549917 25549941 -125233612 + AT_rich Low_complexity Low_complexity 1 24 0 369 208 19 75 chr11 25550088 25550194 -125233359 + MIR SINE MIR 160 259 -3 22 35 0 0 chr11 25551132 25551161 -125232392 + AT_rich Low_complexity Low_complexity 1 29 0 268 181 84 48 chr11 25551545 25551628 -125231925 - MER39 LTR ERV1 -5 702 617 25 51 0 0 chr11 25551714 25551753 -125231800 + AT_rich Low_complexity Low_complexity 1 39 0 634 226 51 0 chr11 25551883 25552060 -125231493 + L1MB7 LINE L1 4959 5144 -1002 * 7176 176 27 35 chr11 25552058 25554065 -125229488 + L1P3 LINE L1 1 1997 -4464 1417 193 53 92 chr11 25554065 25554602 -125228951 - LTR22A LTR ERVK 0 458 1 3502 172 22 0 chr11 25554602 25555225 -125228328 + L1P3 LINE L1 1992 2628 -3833 3477 234 43 16 chr11 25555208 25556249 -125227304 + L1MB7 LINE L1 5114 6176 -8 * 328 215 13 0 chr11 25557040 25557119 -125226434 - MLT1K LTR MaLR -162 426 347 213 367 28 18 chr11 25557618 25557727 -125225826 + MIR SINE MIR 5 114 -148 195 333 0 0 chr11 25557759 25557813 -125225740 + MIR SINE MIR 209 262 0 433 224 16 0 chr11 25558188 25558313 -125225240 + (TG)n Simple_repeat Simple_repeat 2 128 0 2118 114 4 0 chr11 25558329 25558609 -125224944 - AluSx SINE Alu -18 294 14 189 393 0 0 chr11 25559288 25559349 -125224204 - L2 LINE L2 -208 3064 3004 1111 252 65 42 chr11 25560665 25561164 -125222389 + MER34B LTR ERV1 5 565 0 976 188 11 5 chr11 25561820 25562006 -125221547 + Tigger1 DNA MER2_type 1 187 -2231 897 128 0 0 chr11 25562006 25562159 -125221394 - AluSg/x SINE Alu 0 309 157 3124 155 95 10 chr11 25562160 25562773 -125220780 + Tigger1 DNA MER2_type 185 849 -1569 345 24 0 0 chr11 25563029 25563071 -125220482 + (CA)n Simple_repeat Simple_repeat 2 43 0 338 296 76 43 chr11 25563447 25563724 -125219829 - L1ME LINE L1 -307 5814 5529 25 65 0 0 chr11 25563761 25563807 -125219746 + AT_rich Low_complexity Low_complexity 1 46 0 337 357 14 29 chr11 25565384 25565524 -125218029 - MIR3 SINE MIR -69 139 2 333 369 15 46 chr11 25566274 25566469 -125217084 + MIR SINE MIR 20 208 -54 11076 175 118 12 chr11 25566807 25567235 -125216318 - L1PBa LINE L1 -3513 3349 2968 2188 122 0 3 chr11 25567235 25567558 -125215995 - AluSx SINE Alu 0 312 3 11076 175 118 12 chr11 25567558 25570037 -125213516 - L1PBa LINE L1 -3894 2968 128 2135 113 3 0 chr11 25570047 25570339 -125213214 - AluSc SINE Alu -16 293 1 208 269 0 0 chr11 25570373 25570425 -125213128 + (TA)n Simple_repeat Simple_repeat 1 52 0 996 190 19 9 chr11 25570960 25571171 -125212382 + MLT2B3 LTR ERVL 1 213 -341 1343 183 41 59 chr11 25571241 25571618 -125211935 + MLT2B3 LTR ERVL 192 554 0 24 0 0 0 chr11 25573285 25573309 -125210244 + AT_rich Low_complexity Low_complexity 1 24 0 375 335 7 0 chr11 25573763 25573915 -125209638 + HAL1 LINE L1 1399 1551 -956 28 0 0 0 chr11 25574420 25574448 -125209105 + AT_rich Low_complexity Low_complexity 1 28 0 792 225 88 4 chr11 25574792 25575079 -125208474 - MER21B LTR ERV1 -362 501 171 3091 219 13 14 chr11 25575079 25575706 -125207847 - MER4B-int LTR ERV1 -2348 1843 1218 777 183 0 0 chr11 25575753 25575879 -125207674 - FLAM_C SINE Alu -17 126 1 5250 178 50 33 chr11 25575883 25576446 -125207107 - MER4B-int LTR ERV1 -2546 4212 3660 2178 123 3 0 chr11 25576446 25576746 -125206807 + AluSq SINE Alu 1 301 -12 5250 178 50 33 chr11 25576746 25577135 -125206418 - MER4B-int LTR ERV1 -3098 3660 3237 4002 163 85 26 chr11 25577135 25577986 -125205567 + MER4D LTR ERV1 3 903 0 5250 178 50 33 chr11 25577986 25578143 -125205410 - MER4B-int LTR ERV1 -3521 3237 3084 2398 201 56 8 chr11 25578203 25578685 -125204868 - MER21A LTR ERV1 0 931 427 421 286 201 21 chr11 25578830 25579257 -125204296 + L1 LINE L1 2717 3220 -2926 339 312 145 40 chr11 25579456 25579780 -125203773 + L1 LINE L1 3441 3798 -2348 249 139 0 0 chr11 25579904 25579947 -125203606 + (TG)n Simple_repeat Simple_repeat 2 44 0 2440 112 135 105 chr11 25581422 25582014 -125201539 - MER4B LTR ERV1 0 610 1 944 276 133 13 chr11 25582746 25583061 -125200492 - LTR18A LTR ERVL 0 357 5 643 306 67 63 chr11 25583351 25583584 -125199969 + MLT1J LTR MaLR 1 232 -279 7818 26 6 0 chr11 25583584 25585282 -125198271 - L1PA3 LINE L1 -3 6152 4449 643 306 67 63 chr11 25585282 25585555 -125197998 + MLT1J LTR MaLR 232 509 -2 3537 128 17 25 chr11 25585899 25585930 -125197623 - L1M1 LINE L1 -4371 3194 3164 3735 104 5 19 chr11 25585930 25586506 -125197047 - L1MA2 LINE L1 0 6304 5737 3537 128 17 25 chr11 25586506 25587105 -125196448 - L1M1 LINE L1 -4401 3164 2569 5464 101 7 20 chr11 25587117 25587426 -125196127 - L1PA8A LINE L1 -1 6130 5818 258 56 0 0 chr11 25587426 25587462 -125196091 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1798 97 101 0 chr11 25587462 25587719 -125195834 - AluY SINE Alu -28 283 1 5464 101 7 20 chr11 25587719 25588243 -125195310 - L1PA8A LINE L1 -311 5820 5307 3959 190 42 7 chr11 25588236 25589008 -125194545 - L1M1 LINE L1 -6755 810 12 * 347 236 42 0 chr11 25589011 25589083 -125194470 - MER5A DNA MER1_type -114 75 1 363 78 0 0 chr11 25589214 25589265 -125194288 + (TG)n Simple_repeat Simple_repeat 2 52 0 29 28 0 0 chr11 25590564 25590600 -125192953 + AT_rich Low_complexity Low_complexity 1 36 0 2009 189 100 23 chr11 25590777 25591247 -125192306 - L1MC1 LINE L1 -19 6314 5809 597 174 22 22 chr11 25591259 25591437 -125192116 + GA-rich Low_complexity Low_complexity 3 180 0 341 286 94 16 chr11 25591443 25591635 -125191918 - L2 LINE L2 -1209 2105 1899 389 270 40 24 chr11 25592782 25592908 -125190645 + MIR SINE MIR 129 256 -6 459 313 133 9 chr11 25593774 25594007 -125189546 - MIR SINE MIR 0 262 1 21 36 0 0 chr11 25594528 25594556 -125188997 + AT_rich Low_complexity Low_complexity 1 28 0 316 183 0 0 chr11 25595163 25595223 -125188330 - HsTC2 DNA Tc2 -1835 63 4 276 167 0 19 chr11 25595311 25595365 -125188188 - MLT1A1 LTR MaLR -269 96 44 3469 168 39 68 chr11 25595389 25595662 -125187891 + MER54B LTR ERVL 61 340 -453 266 0 0 29 chr11 25595662 25595697 -125187856 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3469 168 39 68 chr11 25595697 25596177 -125187376 + MER54B LTR ERVL 340 792 -1 22 0 0 0 chr11 25596975 25596997 -125186556 + AT_rich Low_complexity Low_complexity 1 22 0 2121 114 24 32 chr11 25597147 25597525 -125186028 + THE1C LTR MaLR 1 375 0 186 43 0 0 chr11 25599369 25599392 -125184161 + (T)n Simple_repeat Simple_repeat 1 23 0 301 328 174 24 chr11 25599523 25599770 -125183783 + L1MC/D LINE L1 5353 5636 -2172 197 136 0 45 chr11 25599813 25599857 -125183696 + (CATATA)n Simple_repeat Simple_repeat 2 43 0 27 0 0 0 chr11 25600894 25600921 -125182632 + AT_rich Low_complexity Low_complexity 1 27 0 268 406 104 0 chr11 25602667 25602869 -125180684 + L2 LINE L2 2690 2912 -402 231 300 0 0 chr11 25603360 25603420 -125180133 + L2 LINE L2 3213 3272 0 264 309 64 45 chr11 25604529 25604639 -125178914 + MIR3 SINE MIR 44 155 -53 296 318 93 13 chr11 25604851 25605002 -125178551 - MIR SINE MIR -69 193 31 408 273 30 38 chr11 25605236 25605368 -125178185 + MIR SINE MIR 98 228 -34 23 33 0 0 chr11 25605507 25605537 -125178016 + AT_rich Low_complexity Low_complexity 1 30 0 285 291 60 34 chr11 25605741 25605858 -125177695 - MIR3 SINE MIR -2 206 87 26 0 0 0 chr11 25606037 25606063 -125177490 + AT_rich Low_complexity Low_complexity 1 26 0 2411 76 0 0 chr11 25607047 25607348 -125176205 - AluY SINE Alu -9 302 2 582 262 142 21 chr11 25607997 25608230 -125175323 - MIR SINE MIR 0 262 2 2310 134 27 61 chr11 25608332 25608773 -125174780 + MSTB LTR MaLR 1 426 0 480 251 107 74 chr11 25610044 25610259 -125173294 + L2 LINE L2 1975 2196 -1118 662 267 98 36 chr11 25610288 25610422 -125173131 - L2 LINE L2 -700 2614 2490 824 153 0 7 chr11 25610422 25610566 -125172987 + L1PA15 LINE L1 6019 6161 -4 662 267 98 36 chr11 25610566 25610708 -125172845 - L2 LINE L2 -824 2490 2321 682 349 31 66 chr11 25610730 25611214 -125172339 - MLT2F LTR ERVL -13 650 184 401 327 69 27 chr11 25611249 25611509 -125172044 + L2 LINE L2 2968 3238 -75 368 215 0 0 chr11 25611680 25611759 -125171794 + MER116 DNA Mariner 1 79 -1 215 200 0 0 chr11 25611821 25611856 -125171697 + (TG)n Simple_repeat Simple_repeat 2 36 0 210 116 23 23 chr11 25612813 25612856 -125170697 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 33 56 0 0 chr11 25613450 25613504 -125170049 + AT_rich Low_complexity Low_complexity 1 54 0 1681 204 63 37 chr11 25614221 25614581 -125168972 + MER39 LTR ERV1 260 634 -73 2104 105 10 26 chr11 25614581 25614887 -125168666 - AluSx SINE Alu -11 301 1 1681 204 63 37 chr11 25614887 25614957 -125168596 + MER39 LTR ERV1 634 701 -6 361 194 0 0 chr11 25615692 25615759 -125167794 + MER63 DNA MER1_type 683 749 -313 303 268 12 12 chr11 25615764 25615846 -125167707 + MER63 DNA MER1_type 980 1061 0 293 221 197 33 chr11 25616218 25616340 -125167213 + LTR16C LTR ERVL 350 491 0 1571 138 0 63 chr11 25616590 25616658 -125166895 + AluSx SINE Alu 45 116 -196 2129 128 33 19 chr11 25616658 25617017 -125166536 + THE1B LTR MaLR 1 364 0 1571 138 0 63 chr11 25617017 25617216 -125166337 + AluSx SINE Alu 116 295 -17 1269 212 111 55 chr11 25617243 25617727 -125165826 + MER39 LTR ERV1 9 705 -2 273 219 0 31 chr11 25617852 25617916 -125165637 + MER21B LTR ERV1 1 62 -801 2644 152 122 50 chr11 25618307 25618994 -125164559 - L1MB3 LINE L1 -264 5919 5185 832 214 3 5 chr11 25619012 25619331 -125164222 - MLT1A1 LTR MaLR 0 365 1 1043 200 8 12 chr11 25619331 25619581 -125163972 + L1MB3 LINE L1 5928 6176 -7 1620 245 52 23 chr11 25619630 25620144 -125163409 + L1ME3A LINE L1 5642 6170 0 254 315 34 0 chr11 25620155 25620244 -125163309 - MIR SINE MIR -111 151 60 21 57 0 0 chr11 25620583 25620618 -125162935 + AT_rich Low_complexity Low_complexity 1 35 0 180 97 0 0 chr11 25621490 25621521 -125162032 + (T)n Simple_repeat Simple_repeat 1 31 0 184 228 88 35 chr11 25621647 25621704 -125161849 - L2 LINE L2 -2482 832 773 385 334 15 6 chr11 25622290 25622450 -125161103 - MIR SINE MIR -67 141 29 2095 105 24 0 chr11 25622452 25622746 -125160807 - AluSg SINE Alu -9 301 1 192 277 84 25 chr11 25622753 25622872 -125160681 + MIR SINE MIR 72 197 -65 1144 218 83 0 chr11 25623573 25623825 -125159728 + AluJo SINE Alu 9 281 -31 21 57 0 0 chr11 25623833 25623868 -125159685 + AT_rich Low_complexity Low_complexity 1 35 0 205 161 0 0 chr11 25623914 25623945 -125159608 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 498 324 31 18 chr11 25624478 25624700 -125158853 + MIR SINE MIR 35 259 -3 622 335 69 4 chr11 25624868 25625113 -125158440 - MIR SINE MIR -1 261 1 212 292 52 21 chr11 25625539 25625635 -125157918 - MIR SINE MIR -156 106 8 360 0 0 0 chr11 25626058 25626098 -125157455 + (CA)n Simple_repeat Simple_repeat 1 40 0 268 287 35 17 chr11 25626399 25626514 -125157039 + MARNA DNA Mariner 246 362 -224 24 0 0 0 chr11 25626517 25626541 -125157012 + AT_rich Low_complexity Low_complexity 1 24 0 256 296 160 0 chr11 25629984 25630109 -125153444 + MER67D LTR ERV1 370 514 0 265 380 64 11 chr11 25630973 25631160 -125152393 + MIR SINE MIR 54 250 -12 2045 129 3 3 chr11 25631196 25631491 -125152062 - AluSc SINE Alu -14 295 1 24 32 0 0 chr11 25631983 25632014 -125151539 + AT_rich Low_complexity Low_complexity 1 31 0 263 286 0 0 chr11 25632466 25632529 -125151024 - L2 LINE L2 -820 2494 2432 1142 313 131 33 chr11 25632560 25632836 -125150717 - L2 LINE L2 -964 2350 2102 2016 136 0 0 chr11 25632836 25633122 -125150431 + AluSx SINE Alu 1 286 -26 1233 136 0 0 chr11 25632946 25633122 -125150431 + AluSg/x SINE Alu 111 309 0 208 0 0 0 chr11 25633122 25633145 -125150408 + (TAAA)n Simple_repeat Simple_repeat 2 156 0 1142 313 131 33 chr11 25633145 25633685 -125149868 - L2 LINE L2 -1212 2102 1473 1981 190 11 8 chr11 25633685 25634049 -125149504 + MLT1A1 LTR MaLR 1 365 0 1142 313 131 33 chr11 25634049 25634096 -125149457 - L2 LINE L2 -1841 1473 1432 265 321 30 23 chr11 25634112 25634243 -125149310 - LTR33 LTR ERVL -4 517 386 311 341 16 23 chr11 25634400 25634529 -125149024 - LTR33 LTR ERVL -354 167 40 183 242 0 0 chr11 25634573 25634606 -125148947 - L2 LINE L2 -1898 1416 1384 1160 227 14 101 chr11 25634607 25635064 -125148489 + MLT2D LTR ERVL 3 520 0 401 240 0 158 chr11 25635064 25635152 -125148401 - L2 LINE L2 -1925 1389 1289 2327 108 0 0 chr11 25635152 25635459 -125148094 + AluSg SINE Alu 1 307 -3 401 240 0 158 chr11 25635459 25635616 -125147937 - L2 LINE L2 -2025 1289 1183 579 146 0 10 chr11 25635618 25635714 -125147839 + HSMAR2 DNA Mariner 253 347 -955 447 227 31 10 chr11 25635715 25635812 -125147741 + FLAM_A SINE Alu 1 99 -43 381 159 55 5 chr11 25636910 25637131 -125146422 + (TA)n Simple_repeat Simple_repeat 1 232 0 31 0 0 0 chr11 25637423 25637454 -125146099 + AT_rich Low_complexity Low_complexity 1 31 0 281 347 0 10 chr11 25637789 25637887 -125145666 + MIR3 SINE MIR 99 195 -13 226 245 0 0 chr11 25640909 25640958 -125142595 - L2 LINE L2 -3 3310 3262 235 261 0 0 chr11 25640988 25641034 -125142519 + polypurine Low_complexity Low_complexity 2 47 0 272 234 360 9 chr11 25641687 25641798 -125141755 + MER5A DNA MER1_type 37 186 -3 669 67 0 0 chr11 25642400 25642490 -125141063 + L1PA6 LINE L1 6062 6151 -3 206 103 0 26 chr11 25643027 25643066 -125140487 + (CAT)n Simple_repeat Simple_repeat 2 39 0 1120 260 62 52 chr11 25643508 25644008 -125139545 - MLT1D LTR MaLR 0 505 1 298 245 9 28 chr11 25644939 25645045 -125138508 + CT-rich Low_complexity Low_complexity 4 107 0 1496 204 9 46 chr11 25645197 25645521 -125138032 - AluJo SINE Alu 0 312 1 251 182 0 0 chr11 25645641 25645685 -125137868 - L2 LINE L2 -2 3311 3268 274 224 26 13 chr11 25645753 25645829 -125137724 + L1MB1 LINE L1 6097 6173 -16 2318 70 3 3 chr11 25646347 25646645 -125136908 + AluY SINE Alu 1 298 -13 21 57 0 0 chr11 25648589 25648624 -125134929 + AT_rich Low_complexity Low_complexity 1 35 0 281 169 15 15 chr11 25648655 25648720 -125134833 + LTR60 LTR ERV1 4 68 -518 351 113 0 0 chr11 25648724 25648777 -125134776 - MLT2A1 LTR ERVL -1 443 391 296 130 81 0 chr11 25648781 25648942 -125134611 + (TA)n Simple_repeat Simple_repeat 1 174 0 317 158 68 0 chr11 25648966 25649279 -125134274 + (TA)n Simple_repeat Simple_repeat 1 334 0 279 0 0 0 chr11 25649278 25649309 -125134244 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 2551 109 16 11 chr11 25649320 25649697 -125133856 - MLT2A1 LTR ERVL -65 379 1 1025 244 84 19 chr11 25649814 25650125 -125133428 + LTR43 LTR ERV1 132 462 -140 234 226 87 35 chr11 25650176 25650291 -125133262 + LTR43 LTR ERV1 462 582 -20 960 211 61 76 chr11 25650607 25651012 -125132541 + MLT1C LTR MaLR 8 378 -12 2164 126 22 22 chr11 25651627 25651991 -125131562 - THE1B LTR MaLR 0 364 1 2129 129 0 3 chr11 25653552 25653862 -125129691 + AluSx SINE Alu 3 311 -1 5591 157 35 3 chr11 25654114 25655123 -125128430 - L1MA6 LINE L1 -6 6294 5254 1822 123 87 0 chr11 25655234 25655510 -125128043 + AluSx SINE Alu 1 300 -12 923 263 7 25 chr11 25656065 25656346 -125127207 + MER93b LTR ERV1 98 373 0 241 194 0 28 chr11 25656545 25656576 -125126977 + A-rich Low_complexity Low_complexity 2 32 -39 1690 153 0 29 chr11 25656576 25656857 -125126696 + AluSx SINE Alu 3 275 -37 241 194 0 28 chr11 25656857 25656897 -125126656 + A-rich Low_complexity Low_complexity 32 71 0 826 178 0 0 chr11 25657583 25657718 -125125835 + AluJo SINE Alu 1 135 -177 2337 90 3 0 chr11 25657718 25658028 -125125525 + AluY SINE Alu 1 311 0 794 180 1 0 chr11 25658065 25658221 -125125332 + L1 LINE L1 3830 3986 -2160 644 217 31 0 chr11 25658801 25658930 -125124623 - FLAM_C SINE Alu -8 135 3 24 32 0 0 chr11 25658949 25658980 -125124573 + AT_rich Low_complexity Low_complexity 1 31 0 1722 155 7 35 chr11 25658980 25659270 -125124283 - AluJb SINE Alu -30 282 1 24 77 0 0 chr11 25660454 25660506 -125123047 + AT_rich Low_complexity Low_complexity 1 52 0 30 69 0 0 chr11 25660577 25660635 -125122918 + AT_rich Low_complexity Low_complexity 1 58 0 219 333 46 0 chr11 25660720 25660807 -125122746 + MER5B DNA MER1_type 87 177 -1 847 186 102 8 chr11 25661122 25661358 -125122195 - MER33 DNA MER1_type -35 289 32 30 45 0 0 chr11 25661621 25661665 -125121888 + AT_rich Low_complexity Low_complexity 1 44 0 226 258 101 22 chr11 25661970 25662059 -125121494 - MLT1J LTR MaLR -24 487 392 2111 152 87 20 chr11 25662155 25662556 -125120997 + MSTA LTR MaLR 1 428 0 260 321 0 47 chr11 25713217 25713323 -125070230 - L3 LINE CR1 -195 1382 1282 270 355 64 6 chr11 25713479 25713651 -125069902 - MIR SINE MIR -15 247 66 191 369 49 49 chr11 25713718 25713943 -125069610 - L3 LINE CR1 -448 1129 905 1463 230 142 64 chr11 25713946 25714140 -125069413 + L1MB7 LINE L1 4304 4481 -1665 2363 87 0 0 chr11 25714140 25714449 -125069104 + AluSc SINE Alu 1 309 0 1463 230 142 64 chr11 25714449 25714650 -125068903 + L1MB7 LINE L1 4481 4665 -1481 352 62 0 125 chr11 25714650 25714730 -125068823 + L1MA1 LINE L1 6233 6302 0 1463 230 142 64 chr11 25714730 25715149 -125068404 + L1MB7 LINE L1 4665 5183 -963 940 262 80 34 chr11 25715154 25715540 -125068013 + L1MCa LINE L1 18 421 -6005 875 247 32 4 chr11 25715571 25715822 -125067731 + L1MB7 LINE L1 5567 5824 -342 421 227 84 40 chr11 25715824 25716056 -125067497 + L1MB7 LINE L1 5951 6183 -1 181 256 0 0 chr11 25716912 25716955 -125066598 - MER5B DNA MER1_type -111 67 25 434 307 12 54 chr11 25716986 25717152 -125066401 - MER5B DNA MER1_type -19 159 1 21 0 0 0 chr11 25717979 25718000 -125065553 + AT_rich Low_complexity Low_complexity 1 21 0 1742 149 25 4 chr11 25718301 25718576 -125064977 + AluSx SINE Alu 3 283 -29 1733 154 7 7 chr11 25718592 25718872 -125064681 + AluSx SINE Alu 1 280 -32 197 65 32 0 chr11 25718874 25718905 -125064648 + (TAA)n Simple_repeat Simple_repeat 2 33 0 988 129 6 0 chr11 25719726 25719889 -125063664 - L1MA4A LINE L1 -4 6299 6136 39 22 0 0 chr11 25719895 25719941 -125063612 + AT_rich Low_complexity Low_complexity 1 46 0 3638 166 22 15 chr11 25720636 25721372 -125062181 + L1MA4A LINE L1 5382 6122 -181 259 203 127 13 chr11 25721376 25721455 -125062098 + L1MA4A LINE L1 6189 6276 -27 36 89 0 8 chr11 25721720 25721779 -125061774 + AT_rich Low_complexity Low_complexity 1 59 -64 5810 118 0 0 chr11 25721779 25723158 -125060395 - L1PA7 LINE L1 -3 6151 4836 36 89 0 8 chr11 25723158 25723222 -125060331 + AT_rich Low_complexity Low_complexity 59 123 0 2518 215 25 7 chr11 25723309 25723876 -125059677 - L1MD3 LINE L1 -5 7990 7414 1118 57 0 0 chr11 25724788 25724928 -125058625 - AluY SINE Alu -9 302 163 2487 55 0 10 chr11 25725522 25725834 -125057719 + AluY SINE Alu 1 309 -2 30 0 0 0 chr11 25726286 25726316 -125057237 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr11 25726659 25726682 -125056871 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 256 62 21 21 chr11 25727274 25727322 -125056231 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 983 251 36 4 chr11 25728015 25728266 -125055287 + AluJo SINE Alu 1 259 -53 366 146 0 0 chr11 25728718 25728800 -125054753 + (A)n Simple_repeat Simple_repeat 1 82 0 22 56 0 0 chr11 25729327 25729363 -125054190 + AT_rich Low_complexity Low_complexity 1 36 0 5075 34 2 5 chr11 25730903 25731522 -125052031 - L1PA4 LINE L1 0 6155 5539 326 284 23 0 chr11 25731854 25731942 -125051611 - L1MC4 LINE L1 -1339 6703 6614 214 131 0 66 chr11 25731996 25732118 -125051435 + (TA)n Simple_repeat Simple_repeat 1 114 0 2423 76 0 16 chr11 25732223 25732539 -125051014 - AluY SINE Alu 0 311 1 1687 194 3 0 chr11 25732542 25732846 -125050707 - L1PB3 LINE L1 -68 6086 5782 236 283 9 38 chr11 25732846 25732952 -125050601 + (TA)n Simple_repeat Simple_repeat 2 104 0 4569 188 19 21 chr11 25732956 25734025 -125049528 - L1PB3 LINE L1 -362 5792 4729 186 43 0 0 chr11 25734025 25734048 -125049505 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4569 188 19 21 chr11 25734048 25734652 -125048901 - L1PB3 LINE L1 -1425 4729 4125 473 239 0 0 chr11 25734658 25734750 -125048803 - MLT1F1 LTR MaLR -442 125 34 441 178 31 141 chr11 25734751 25734914 -125048639 - L1MD3 LINE L1 -881 7114 6970 1903 174 7 0 chr11 25734917 25735227 -125048326 - AluSx SINE Alu 0 312 1 1313 158 39 28 chr11 25735237 25735522 -125048031 - L1MC1 LINE L1 -2 6331 6044 236 310 0 0 chr11 25735619 25735690 -125047863 - MIR SINE MIR -113 149 79 33 25 0 0 chr11 25735801 25735841 -125047712 + AT_rich Low_complexity Low_complexity 1 40 0 589 294 43 5 chr11 25737251 25737438 -125046115 + MLT1L LTR MaLR 417 610 -5 207 0 0 0 chr11 25737745 25737768 -125045785 + (TG)n Simple_repeat Simple_repeat 2 24 0 231 364 81 29 chr11 25738266 25738475 -125045078 + L2 LINE L2 2827 3046 -226 208 273 200 27 chr11 25738604 25738714 -125044839 + L2 LINE L2 3143 3271 -1 7266 165 16 21 chr11 25739129 25740580 -125042973 - L1P LINE L1 -2597 3549 2106 22 0 0 0 chr11 25740684 25740706 -125042847 + AT_rich Low_complexity Low_complexity 1 22 0 263 374 43 0 chr11 25740856 25741015 -125042538 - L2 LINE L2 -356 2916 2770 22 0 0 0 chr11 25741152 25741174 -125042379 + AT_rich Low_complexity Low_complexity 1 22 0 234 62 0 0 chr11 25741532 25741564 -125041989 + (TTG)n Simple_repeat Simple_repeat 2 33 0 264 379 0 0 chr11 25741783 25741878 -125041675 - MIR SINE MIR -148 114 20 1149 220 55 42 chr11 25741986 25742368 -125041185 - MLT1B LTR MaLR -3 387 1 216 0 0 0 chr11 25742808 25742832 -125040721 + (A)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr11 25743332 25743360 -125040193 + AT_rich Low_complexity Low_complexity 1 28 0 377 249 35 35 chr11 25743676 25743849 -125039704 + (CATATA)n Simple_repeat Simple_repeat 4 176 0 24 0 0 0 chr11 25743985 25744009 -125039544 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr11 25744294 25744335 -125039218 + AT_rich Low_complexity Low_complexity 1 41 0 334 324 144 14 chr11 25745070 25745292 -125038261 + MIR SINE MIR 12 262 0 230 265 0 0 chr11 25746007 25746056 -125037497 + L2 LINE L2 3219 3267 -5 25 83 0 0 chr11 25746512 25746572 -125036981 + AT_rich Low_complexity Low_complexity 1 60 0 278 316 0 0 chr11 25746904 25746980 -125036573 - L2 LINE L2 -298 2974 2899 2558 102 45 0 chr11 25747344 25747725 -125035828 - MER41B LTR ERV1 -236 399 2 5875 110 16 17 chr11 25747905 25748881 -125034672 + L1PA14 LINE L1 5185 6159 -2 196 74 0 0 chr11 25749795 25749822 -125033731 + MER5B DNA MER1_type 8 34 -144 356 234 19 56 chr11 25749897 25750004 -125033549 + MER5B DNA MER1_type 75 177 -1 181 133 133 22 chr11 25750370 25750415 -125033138 + L3 LINE CR1 369 418 -1159 234 0 0 0 chr11 25750625 25750651 -125032902 + (TA)n Simple_repeat Simple_repeat 1 26 0 411 375 45 15 chr11 25751774 25752041 -125031512 - L2 LINE L2 -899 2415 2141 1301 234 110 11 chr11 25752251 25752623 -125030930 - MER63B DNA MER1_type 0 436 28 279 0 0 0 chr11 25752637 25752668 -125030885 + (TG)n Simple_repeat Simple_repeat 2 32 0 28 29 0 0 chr11 25752849 25752884 -125030669 + AT_rich Low_complexity Low_complexity 1 35 0 628 331 20 28 chr11 25753009 25753257 -125030296 + MIR SINE MIR 4 249 -13 413 286 56 31 chr11 25753953 25754114 -125029439 - MER5B DNA MER1_type -4 174 10 706 264 146 65 chr11 25755008 25755406 -125028147 - LTR16B LTR ERVL -13 451 22 341 245 41 10 chr11 25756106 25756204 -125027349 + MLT1G LTR MaLR 2 102 -488 25 75 0 0 chr11 25756418 25756471 -125027082 + AT_rich Low_complexity Low_complexity 1 53 0 221 293 13 13 chr11 25756955 25757030 -125026523 + L2 LINE L2 2986 3060 -212 4841 115 8 0 chr11 25757072 25758163 -125025390 - L1PB2 LINE L1 -1 6150 5158 376 336 16 8 chr11 25758582 25758704 -125024849 + L2 LINE L2 3191 3313 0 353 318 13 0 chr11 25759570 25759724 -125023829 - L1MEc LINE L1 -3671 3286 3131 23 0 0 0 chr11 25759750 25759773 -125023780 + AT_rich Low_complexity Low_complexity 1 23 0 1671 231 35 79 chr11 25759785 25759929 -125023624 - L1M4 LINE L1 -914 5232 5083 2091 109 0 0 chr11 25759929 25760203 -125023350 - AluSg SINE Alu -36 274 1 1671 231 35 79 chr11 25760203 25760795 -125022758 - L1M4 LINE L1 -1063 5083 4528 307 288 21 68 chr11 25761072 25761151 -125022402 - L1MEc LINE L1 -4465 2673 2592 1653 184 0 16 chr11 25761151 25761456 -125022097 + AluJb SINE Alu 1 300 -12 307 288 21 68 chr11 25761456 25761567 -125021986 - L1MEc LINE L1 -4546 2592 2492 484 318 52 9 chr11 25761568 25761801 -125021752 - L1MEc LINE L1 -4719 2419 2177 441 317 91 2 chr11 25762025 25762269 -125021284 - L1MEc LINE L1 -5237 1757 1360 182 176 20 0 chr11 25762320 25762371 -125021182 + CT-rich Low_complexity Low_complexity 1 52 0 287 141 16 0 chr11 25762602 25762666 -125020887 + T-rich Low_complexity Low_complexity 1 65 0 9584 32 1 0 chr11 25762666 25764581 -125018972 - L1PA3 LINE L1 -3 6152 4235 28 48 0 0 chr11 25764937 25764979 -125018574 + AT_rich Low_complexity Low_complexity 1 42 0 704 180 11 17 chr11 25765376 25765554 -125017999 + GA-rich Low_complexity Low_complexity 3 179 0 724 117 63 0 chr11 25765593 25765704 -125017849 - AluSc SINE Alu -187 122 5 709 126 0 0 chr11 25765811 25765914 -125017639 - LTR12 LTR ERV1 0 714 612 336 221 12 0 chr11 25765914 25766000 -125017553 - LTR30 LTR ERV1 -80 642 556 1954 70 3 127 chr11 25766000 25766330 -125017223 - LTR12 LTR ERV1 -425 289 1 5576 95 1 11 chr11 25766333 25767113 -125016440 - HERV9 LTR ERV1 -2 8397 7626 2350 182 116 64 chr11 25767111 25767968 -125015585 - Harlequin LTR ERV1 -5156 1740 840 * 28393 96 16 8 chr11 25767935 25772749 -125010804 - Harlequin LTR ERV1 -3419 4980 40 708 159 7 76 chr11 25772717 25772862 -125010691 - pTR5 LTR ERV1 -2001 437 303 * 406 263 17 0 chr11 25772864 25772982 -125010571 - LTR30 LTR ERV1 -79 643 524 1727 61 7 138 chr11 25772982 25773279 -125010274 - LTR12 LTR ERV1 -456 258 1 2100 138 0 0 chr11 25773365 25773681 -125009872 + AluSx SINE Alu 2 317 0 186 339 36 0 chr11 25773683 25773739 -125009814 - MIR SINE MIR -182 80 23 575 237 12 64 chr11 25774080 25774253 -125009300 - MER52A LTR ERV1 0 1755 1592 318 319 90 11 chr11 25774326 25774514 -125009039 - MER52A LTR ERV1 -346 1409 1207 863 226 38 74 chr11 25774647 25775083 -125008470 - MER52A LTR ERV1 -143 898 284 915 236 161 41 chr11 25775798 25775882 -125007671 + MLT1D LTR MaLR 46 119 -386 810 271 83 20 chr11 25775882 25776232 -125007321 - MLT1A2 LTR MaLR 0 374 3 915 236 161 41 chr11 25776232 25776558 -125006995 + MLT1D LTR MaLR 119 505 0 2041 149 37 0 chr11 25777027 25777350 -125006203 - MER1B DNA MER1_type -2 335 1 1620 142 72 48 chr11 25777635 25777966 -125005587 + MER44D DNA MER2_type 1 609 0 202 362 59 20 chr11 25778447 25778599 -125004954 - MIR SINE MIR -85 177 20 180 0 0 0 chr11 25778737 25778757 -125004796 + (A)n Simple_repeat Simple_repeat 1 20 0 31 26 0 0 chr11 25779301 25779339 -125004214 + AT_rich Low_complexity Low_complexity 1 38 0 296 325 54 65 chr11 25779341 25779769 -125003784 + L1PA16 LINE L1 979 1401 -6173 7814 229 37 68 chr11 25780067 25785668 -124997885 + L1PA16 LINE L1 2182 7593 -11 267 271 0 14 chr11 25786664 25786734 -124996819 - MIR SINE MIR -108 154 86 1221 253 33 45 chr11 25786766 25787162 -124996391 - MLT1D LTR MaLR -2 503 113 381 278 16 21 chr11 25787205 25787399 -124996154 + L1ME3A LINE L1 2841 3033 -3113 2149 116 3 0 chr11 25787789 25788081 -124995472 + AluSg SINE Alu 3 295 -15 359 65 74 19 chr11 25788081 25788189 -124995364 + (TA)n Simple_repeat Simple_repeat 1 114 0 410 311 101 28 chr11 25788260 25788907 -124994646 + L1ME3A LINE L1 5257 5950 -220 2105 125 3 0 chr11 25789319 25789616 -124993937 - AluSx SINE Alu -14 298 1 2783 84 41 5 chr11 25789703 25790120 -124993433 - L1MA1 LINE L1 -10 6292 5861 1283 159 24 12 chr11 25790429 25790680 -124992873 - L1MA3 LINE L1 -319 5981 5738 1966 125 21 6 chr11 25790680 25791006 -124992547 + L1MA3 LINE L1 5973 6305 0 2265 88 0 3 chr11 25791187 25791482 -124992071 - AluSg1 SINE Alu -15 294 1 216 172 0 0 chr11 25792170 25792228 -124991325 + A-rich Low_complexity Low_complexity 1 58 0 242 280 27 13 chr11 25792386 25792461 -124991092 - MIR SINE MIR -122 140 65 10658 47 2 0 chr11 25792775 25794858 -124988695 - L1PA5 LINE L1 -8 6146 4057 9427 56 15 2 chr11 25794858 25796106 -124987447 + L1P LINE L1 2572 3835 -2311 1078 105 21 26 chr11 25796258 25796449 -124987104 + AluSc SINE Alu 59 248 -61 24 32 0 0 chr11 25796489 25796520 -124987033 + AT_rich Low_complexity Low_complexity 1 31 0 204 238 0 0 chr11 25798045 25798087 -124985466 - MIR SINE MIR -81 127 86 360 319 47 61 chr11 25799337 25799531 -124984022 - MIR SINE MIR -6 256 64 1775 200 22 8 chr11 25799531 25799891 -124983662 - MLT1A1 LTR MaLR 0 365 1 360 319 47 61 chr11 25799891 25799909 -124983644 - MIR SINE MIR -198 64 47 259 256 0 35 chr11 25800158 25800244 -124983309 + CT-rich Low_complexity Low_complexity 1 83 0 194 328 79 34 chr11 25800399 25800547 -124983006 - MIR SINE MIR -53 155 1 197 223 10 48 chr11 25801482 25801585 -124981968 + GA-rich Low_complexity Low_complexity 4 102 0 1716 187 6 16 chr11 25801684 25801999 -124981554 + AluJb SINE Alu 1 312 0 1093 214 0 0 chr11 25802535 25802741 -124980812 - MER2 DNA MER2_type -139 206 1 230 262 127 40 chr11 25803157 25803283 -124980270 - MIR SINE MIR -13 249 113 223 250 162 34 chr11 25804074 25804222 -124979331 - L3 LINE CR1 -159 1418 1252 222 359 11 0 chr11 25804563 25804655 -124978898 + L2 LINE L2 3170 3262 -10 325 299 94 0 chr11 25804789 25804916 -124978637 - MIR SINE MIR -49 213 75 2355 96 14 0 chr11 25806563 25806919 -124976634 - L1PA7 LINE L1 -790 5356 4996 5832 70 14 8 chr11 25806919 25807714 -124975839 + L1PA7 LINE L1 5354 6154 0 22 35 0 0 chr11 25808556 25808585 -124974968 + AT_rich Low_complexity Low_complexity 1 29 0 243 343 90 18 chr11 25808609 25808826 -124974727 + MIR SINE MIR 20 255 -7 566 218 269 35 chr11 25809787 25809984 -124973569 - MLT1E1 LTR MaLR -405 249 7 425 19 19 0 chr11 25810144 25810198 -124973355 + (TG)n Simple_repeat Simple_repeat 2 56 0 939 58 0 0 chr11 25810666 25810787 -124972766 + L1PA4 LINE L1 6032 6152 -3 1507 76 0 0 chr11 25811013 25811210 -124972343 + L1PA5 LINE L1 5955 6151 -3 31 26 0 0 chr11 25811210 25811248 -124972305 + AT_rich Low_complexity Low_complexity 1 38 0 386 346 23 8 chr11 25811423 25811553 -124972000 - MIR SINE MIR -108 154 23 498 283 58 31 chr11 25811593 25811784 -124971769 + L2 LINE L2 3116 3311 -2 683 258 51 36 chr11 25812291 25812566 -124970987 - LTR4 LTR ERV1 0 596 318 506 255 15 60 chr11 25812758 25812958 -124970595 - LTR4 LTR ERV1 -396 200 10 342 360 104 9 chr11 25813233 25813444 -124970109 - MIR SINE MIR -20 242 12 23 33 0 0 chr11 25814814 25814844 -124968709 + AT_rich Low_complexity Low_complexity 1 30 0 35 24 0 0 chr11 25815361 25815403 -124968150 + AT_rich Low_complexity Low_complexity 1 42 0 1543 158 0 99 chr11 25815403 25815726 -124967827 - AluJb SINE Alu -21 291 1 649 194 13 0 chr11 25815910 25816065 -124967488 + GA-rich Low_complexity Low_complexity 3 159 0 189 94 0 0 chr11 25816115 25816147 -124967406 + (T)n Simple_repeat Simple_repeat 1 32 0 2217 72 11 0 chr11 25816841 25817177 -124966376 - AluY SINE Alu 0 339 1 333 248 104 24 chr11 25819490 25819615 -124963938 + Tigger5 DNA MER2_type 1 135 -2188 1013 179 18 28 chr11 25819616 25819834 -124963719 + Tigger5 DNA MER2_type 2105 2320 -3 2302 88 3 13 chr11 25820411 25820718 -124962835 - AluSq SINE Alu -9 304 1 295 279 77 0 chr11 25822209 25822252 -124961301 + L2 LINE L2 3201 3239 -74 484 145 30 46 chr11 25822252 25822383 -124961170 - L1MA7 LINE L1 0 6291 6163 295 279 77 0 chr11 25822383 25822443 -124961110 + L2 LINE L2 3239 3312 -1 183 129 0 0 chr11 25822573 25822604 -124960949 + (T)n Simple_repeat Simple_repeat 1 31 0 2258 60 3 3 chr11 25822931 25823244 -124960309 - AluY SINE Alu 0 313 1 247 289 36 12 chr11 25823431 25823514 -124960039 - L2 LINE L2 0 3313 3229 * 465 324 46 33 chr11 25823512 25823753 -124959800 - MIR SINE MIR -6 256 13 29 47 0 0 chr11 25823828 25823871 -124959682 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr11 25825972 25826000 -124957553 + AT_rich Low_complexity Low_complexity 1 28 0 343 319 96 26 chr11 25826559 25826788 -124956765 + MIR SINE MIR 15 259 -3 273 29 0 0 chr11 25826881 25826915 -124956638 + (TG)n Simple_repeat Simple_repeat 1 34 0 996 293 51 32 chr11 25827957 25828475 -124955078 + L2 LINE L2 2608 3138 -175 317 96 0 19 chr11 25829233 25829285 -124954268 - MADE1 DNA Mariner -29 51 1 184 303 182 0 chr11 25829856 25829955 -124953598 + L2 LINE L2 2701 2817 -497 1610 301 65 18 chr11 25829984 25830307 -124953246 + L1M4 LINE L1 3553 3859 -2287 2568 36 3 7 chr11 25830307 25830614 -124952939 + AluY SINE Alu 1 306 -5 1610 301 65 18 chr11 25830614 25831277 -124952276 + L1M4 LINE L1 3859 4585 -1561 210 133 67 17 chr11 25831894 25831954 -124951599 + (TTATA)n Simple_repeat Simple_repeat 1 63 0 284 313 24 0 chr11 25831983 25832066 -124951487 - MIR SINE MIR -144 118 34 22 80 0 0 chr11 25832143 25832193 -124951360 + AT_rich Low_complexity Low_complexity 1 50 0 181 303 15 15 chr11 25833209 25833275 -124950278 - MIR SINE MIR -82 180 115 647 295 124 5 chr11 25833283 25833500 -124950053 + MER92C LTR ERV1 1 243 -311 440 267 55 24 chr11 25833551 25833716 -124949837 + MER92C LTR ERV1 383 552 -2 180 0 0 0 chr11 25834231 25834251 -124949302 + (A)n Simple_repeat Simple_repeat 1 20 0 1193 161 274 9 chr11 25834251 25834568 -124948985 - MSTA LTR MaLR -27 401 1 2080 153 11 19 chr11 25834679 25835057 -124948496 + THE1C LTR MaLR 1 375 0 23 33 0 0 chr11 25835930 25835960 -124947593 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr11 25836114 25836148 -124947405 + AT_rich Low_complexity Low_complexity 1 34 0 411 318 42 21 chr11 25836676 25836865 -124946688 - L2 LINE L2 -440 2874 2682 193 119 48 0 chr11 25837039 25837081 -124946472 + (TA)n Simple_repeat Simple_repeat 2 45 0 1472 198 27 34 chr11 25837285 25837583 -124945970 - AluJo SINE Alu -16 296 1 597 163 0 0 chr11 25837770 25837862 -124945691 + MLT1A1 LTR MaLR 2 93 -272 288 0 0 0 chr11 25837899 25837931 -124945622 + (TG)n Simple_repeat Simple_repeat 2 33 0 27 81 0 0 chr11 25839273 25839335 -124944218 + AT_rich Low_complexity Low_complexity 1 62 0 1280 94 133 0 chr11 25839660 25839863 -124943690 - MER30 DNA MER1_type 0 230 1 300 320 111 57 chr11 25839864 25840108 -124943445 - L1MC/D LINE L1 -2065 5743 5487 21 71 0 0 chr11 25840155 25840197 -124943356 + AT_rich Low_complexity Low_complexity 1 42 0 1306 194 76 0 chr11 25840510 25840773 -124942780 + AluJo SINE Alu 5 287 -25 30 0 0 0 chr11 25840773 25840803 -124942750 + AT_rich Low_complexity Low_complexity 1 30 0 713 185 8 0 chr11 25840805 25840935 -124942618 + FLAM_C SINE Alu 1 131 -2 23 33 0 0 chr11 25841426 25841456 -124942097 + AT_rich Low_complexity Low_complexity 1 30 0 2908 190 47 72 chr11 25841605 25842643 -124940910 - L1MB8 LINE L1 -1 6177 5149 384 261 39 13 chr11 25842643 25842796 -124940757 - L1MB8 LINE L1 -3798 2348 2192 1097 191 53 114 chr11 25842822 25843183 -124940370 + MLT1A1 LTR MaLR 19 357 -8 718 307 59 32 chr11 25843190 25843965 -124939588 - L1MEc LINE L1 -4121 2275 1480 1845 177 122 8 chr11 25844057 25844441 -124939112 - MSTA LTR MaLR 0 428 1 7938 199 21 12 chr11 25844441 25846077 -124937476 - MSTA-int LTR MaLR 0 1651 1 1678 154 171 14 chr11 25846084 25846434 -124937119 - MSTA LTR MaLR -14 414 10 324 297 67 41 chr11 25846438 25846804 -124936749 - L1MEc LINE L1 -5016 1380 953 522 189 11 0 chr11 25847705 25847795 -124935758 + AluJ/FLAM SINE Alu 1 91 -221 294 328 38 8 chr11 25848060 25848191 -124935362 + L2 LINE L2 3167 3301 -12 257 297 69 10 chr11 25848629 25848730 -124934823 + MIR3 SINE MIR 93 199 -9 1097 157 35 5 chr11 25848916 25849113 -124934440 - L1PA16 LINE L1 0 6166 5964 5354 202 19 28 chr11 25849114 25851035 -124932518 - L1PA16 LINE L1 -330 5836 3934 24 0 0 0 chr11 25851045 25851069 -124932484 + AT_rich Low_complexity Low_complexity 1 24 0 3023 247 102 61 chr11 25851890 25852598 -124930955 - L1MC4a LINE L1 0 7808 7131 200 35 35 0 chr11 25852598 25852627 -124930926 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 3023 247 102 61 chr11 25852627 25852937 -124930616 - L1MC4a LINE L1 -677 7131 6835 2829 16 0 0 chr11 25852937 25853255 -124930298 + AluYb8 SINE Alu 1 318 0 3023 247 102 61 chr11 25853255 25853682 -124929871 - L1MC4a LINE L1 -973 6835 6302 2497 48 0 3 chr11 25854759 25855071 -124928482 + AluY SINE Alu 1 311 0 333 100 0 0 chr11 25855657 25855707 -124927846 + (TG)n Simple_repeat Simple_repeat 1 50 0 394 240 136 45 chr11 25856555 25856709 -124926844 + MIR SINE MIR 20 187 -75 348 293 62 16 chr11 25857484 25857616 -124925937 + MIR3 SINE MIR 25 165 -43 317 322 55 33 chr11 25858376 25858559 -124924994 + MIR SINE MIR 10 196 -66 2937 300 67 20 chr11 25859811 25860969 -124922584 - ERVL LTR ERVL -2232 3532 2320 1527 311 104 45 chr11 25861010 25861870 -124921683 - ERVL LTR ERVL -3469 2224 1267 1872 133 61 19 chr11 25861870 25862230 -124921323 - THE1C LTR MaLR 0 375 1 1527 311 104 45 chr11 25862230 25862279 -124921274 - ERVL LTR ERVL -4426 1267 1222 423 325 89 0 chr11 25862283 25862474 -124921079 + MER3 DNA MER1_type 2 209 0 1685 294 47 26 chr11 25862788 25863403 -124920150 - MLT2E LTR ERVL 0 628 1 435 349 92 4 chr11 25864376 25864605 -124918948 + MIR SINE MIR 14 262 0 225 239 310 21 chr11 25865682 25865824 -124917729 - MIR3 SINE MIR -3 205 23 246 128 0 0 chr11 25866062 25866101 -124917452 + (T)n Simple_repeat Simple_repeat 1 39 0 847 226 58 0 chr11 25866112 25866302 -124917251 - MLT1B LTR MaLR -176 214 14 371 292 0 0 chr11 25866311 25866400 -124917153 - MLT1J LTR MaLR -292 219 131 3019 40 3 8 chr11 25867170 25867550 -124916003 + L1PA7 LINE L1 5774 6151 -3 28 29 0 0 chr11 25867622 25867657 -124915896 + AT_rich Low_complexity Low_complexity 1 35 0 31 44 0 0 chr11 25867703 25867748 -124915805 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr11 25867935 25867967 -124915586 + AT_rich Low_complexity Low_complexity 1 32 0 294 106 0 0 chr11 25867972 25868019 -124915534 + (T)n Simple_repeat Simple_repeat 1 47 0 4545 201 38 9 chr11 25868028 25869158 -124914395 - L1MC1 LINE L1 -178 6435 5255 387 0 0 0 chr11 25869158 25869201 -124914352 + (TG)n Simple_repeat Simple_repeat 2 44 0 4545 201 38 9 chr11 25869201 25869541 -124914012 - L1MC1 LINE L1 -1358 5255 4926 3008 251 35 48 chr11 25869568 25870541 -124913012 - L1MC1 LINE L1 -2338 4088 3130 2094 64 37 3 chr11 25870541 25870839 -124912714 - L1PA10 LINE L1 -3 6165 5858 3008 251 35 48 chr11 25870839 25870967 -124912586 - L1MC1 LINE L1 -3296 3130 3002 * 6656 242 47 47 chr11 25870965 25873597 -124909956 - L1MB2 LINE L1 -163 6008 3377 2222 105 0 3 chr11 25873597 25873902 -124909651 - AluSx SINE Alu 0 312 9 6656 242 47 47 chr11 25873902 25874654 -124908899 - L1MB2 LINE L1 -2794 3377 2627 674 180 29 100 chr11 25874642 25874881 -124908672 - L1MC1 LINE L1 -5316 1110 889 * 2178 165 8 3 chr11 25874882 25875239 -124908314 + THE1B LTR MaLR 6 364 0 1600 123 8 0 chr11 25875239 25875490 -124908063 + THE1B-int LTR MaLR 1 253 -1327 1318 253 115 10 chr11 25875492 25875891 -124907662 - L1MC1 LINE L1 -5945 481 41 180 111 0 0 chr11 25876558 25876585 -124906968 + (TG)n Simple_repeat Simple_repeat 2 28 0 245 222 0 22 chr11 25876710 25876800 -124906753 + (TATG)n Simple_repeat Simple_repeat 3 90 0 1513 185 105 3 chr11 25876814 25877128 -124906425 - MER7A DNA MER2_type 0 346 3 304 372 67 12 chr11 25878767 25878832 -124904721 + MER5A DNA MER1_type 10 70 -119 1961 125 34 3 chr11 25878832 25878960 -124904593 + AluSx SINE Alu 1 124 -188 378 0 0 0 chr11 25878960 25879002 -124904551 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1961 125 34 3 chr11 25879002 25879168 -124904385 + AluSx SINE Alu 124 304 -8 304 372 67 12 chr11 25879168 25879266 -124904287 + MER5A DNA MER1_type 70 182 -7 432 344 147 36 chr11 25879277 25879745 -124903808 - L3 LINE CR1 -83 1494 975 31 76 0 0 chr11 25880859 25880925 -124902628 + AT_rich Low_complexity Low_complexity 1 66 0 37161 35 24 1 chr11 25880925 25886344 -124897209 - L1PA3 LINE L1 -4 6151 606 208 261 45 23 chr11 25886596 25886684 -124896869 + L2 LINE L2 3183 3272 0 686 185 14 11 chr11 25887699 25887985 -124895568 + GA-rich Low_complexity Low_complexity 1 287 0 344 331 124 0 chr11 25888734 25888879 -124894674 + MER5A DNA MER1_type 26 188 -1 194 344 11 43 chr11 25889755 25889848 -124893705 + MIR SINE MIR 51 140 -122 547 176 35 99 chr11 25890212 25890354 -124893199 + LTR8A LTR ERV1 595 727 0 573 328 21 16 chr11 25890354 25890546 -124893007 + HUERS-P1 LTR ERV1 1 193 -6070 715 168 54 18 chr11 25890547 25890714 -124892839 - L1M3 LINE L1 -686 5482 5310 846 227 0 0 chr11 25890714 25890890 -124892663 - L1M3 LINE L1 -1123 5023 4848 908 346 29 48 chr11 25890891 25891249 -124892304 - L1M3d LINE L1 -5380 511 165 1636 175 0 55 chr11 25891249 25891575 -124891978 - AluJb SINE Alu -4 308 1 908 346 29 48 chr11 25891575 25891736 -124891817 - L1M3d LINE L1 -5726 165 2 27 49 0 0 chr11 25891781 25891822 -124891731 + AT_rich Low_complexity Low_complexity 1 41 0 29 47 0 0 chr11 25891945 25891988 -124891565 + AT_rich Low_complexity Low_complexity 1 43 0 4496 196 21 2 chr11 25892181 25893077 -124890476 - L1MA4A LINE L1 -4 6299 5387 5965 150 30 23 chr11 25893871 25894048 -124889505 - L1MA2 LINE L1 0 7723 7549 5221 128 18 0 chr11 25894048 25895147 -124888406 - L1PA10 LINE L1 -2 6166 5055 5965 150 30 23 chr11 25895147 25896888 -124886665 - L1MA2 LINE L1 -174 7549 5791 17605 179 33 42 chr11 25896912 25900384 -124883169 - L1MA2 LINE L1 -3695 3870 368 271 0 25 25 chr11 25900384 25900424 -124883129 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 17605 179 33 42 chr11 25900424 25900567 -124882986 - L1MA2 LINE L1 -7197 368 225 430 103 0 0 chr11 25900567 25900635 -124882918 - MER41A LTR ERV1 -87 467 400 17605 179 33 42 chr11 25900635 25900835 -124882718 - L1MA2 LINE L1 -7340 225 17 2044 113 3 0 chr11 25900847 25901164 -124882389 - AluY SINE Alu 0 318 1 192 40 0 0 chr11 25902590 25902615 -124880938 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1516 175 11 28 chr11 25902616 25902902 -124880651 - AluJo SINE Alu -31 281 1 252 291 62 88 chr11 25903274 25903482 -124880071 + MIR SINE MIR 22 214 -48 189 275 0 0 chr11 25903488 25903528 -124880025 - MIR SINE MIR -72 190 151 255 267 47 0 chr11 25903535 25903621 -124879932 - L1MA4A LINE L1 -23 6280 6191 4196 182 23 23 chr11 25903626 25903668 -124879885 - L1MA4A LINE L1 -181 6122 6082 2863 97 68 0 chr11 25903668 25904092 -124879461 - MLT2A2 LTR ERVL 0 453 1 4196 182 23 23 chr11 25904092 25905476 -124878077 - L1MA4A LINE L1 -221 6082 4696 1475 173 26 29 chr11 25905513 25905819 -124877734 - L1PA15 LINE L1 -3 6162 5858 2402 126 70 7 chr11 25905846 25906260 -124877293 - L1PA14 LINE L1 -250 5911 5472 6469 48 0 1 chr11 25906372 25907182 -124876371 - L1PA14 LINE L1 -853 5293 4485 4510 238 101 86 chr11 25907221 25909616 -124873937 - L1PA15-16 LINE L1 -964 5885 3529 326 98 0 16 chr11 25909616 25909677 -124873876 + (TA)n Simple_repeat Simple_repeat 2 61 0 4510 238 101 86 chr11 25909677 25910239 -124873314 - L1PA15-16 LINE L1 -3320 3529 2977 207 0 0 0 chr11 25910239 25910262 -124873291 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4510 238 101 86 chr11 25910262 25911122 -124872431 - L1PA15-16 LINE L1 -3872 2977 2136 1948 142 33 0 chr11 25911122 25911425 -124872128 - AluSq SINE Alu 0 313 1 4510 238 101 86 chr11 25911425 25911522 -124872031 - L1PA15-16 LINE L1 -4713 2136 2042 1032 93 20 0 chr11 25911523 25911673 -124871880 - MER75 DNA T2_type -1 503 351 1860 152 17 0 chr11 25911677 25911973 -124871580 - AluSx SINE Alu -7 305 5 1140 249 9 0 chr11 25911980 25912306 -124871247 - L1M2 LINE L1 -4943 1906 1578 1414 145 29 13 chr11 25912316 25912572 -124870981 - L1PA10 LINE L1 0 6163 5897 799 53 0 18 chr11 25912570 25912684 -124870869 + L1P LINE L1 5254 5365 -766 * 3202 318 11 58 chr11 25912665 25914068 -124869485 - L1M2 LINE L1 -5249 1600 264 529 278 60 0 chr11 25914081 25914232 -124869321 - MIR SINE MIR -99 163 4 33 25 0 0 chr11 25914525 25914565 -124868988 + AT_rich Low_complexity Low_complexity 1 40 0 254 308 67 33 chr11 25915698 25915818 -124867735 + LTR16A LTR ERVL 94 217 -233 755 321 91 45 chr11 25915971 25916544 -124867009 + HERVL LTR ERVL 109 707 -4289 1791 307 92 72 chr11 25916692 25918003 -124865550 + HERVL LTR ERVL 901 2236 -2760 1568 349 45 29 chr11 25918636 25919730 -124863823 + HERVL LTR ERVL 3724 4834 -820 402 359 58 22 chr11 25920296 25920608 -124862945 + LTR16A LTR ERVL 21 343 -107 4126 180 46 58 chr11 25920763 25922062 -124861491 - L1MA4 LINE L1 -6 6294 5007 286 321 60 11 chr11 25922196 25922380 -124861173 - MER76 LTR ERV -33 655 463 7948 208 11 21 chr11 25923127 25924984 -124858569 - L1 LINE L1 -836 5310 3472 321 115 0 0 chr11 25925428 25925480 -124858073 - L1M LINE L1 -938 5364 5313 956 139 23 0 chr11 25925480 25925653 -124857900 + L1MA1 LINE L1 6006 6182 -120 338 136 0 0 chr11 25925655 25925714 -124857839 + L1MA2 LINE L1 6246 6304 0 22 0 0 0 chr11 25927203 25927225 -124856328 + AT_rich Low_complexity Low_complexity 1 22 0 1125 173 13 4 chr11 25928713 25928938 -124854615 + L1MA4 LINE L1 5644 5870 -430 477 334 46 84 chr11 25928964 25929311 -124854242 - L2 LINE L2 -10 3262 2929 246 32 0 0 chr11 25929394 25929425 -124854128 + (TA)n Simple_repeat Simple_repeat 2 32 0 512 289 89 67 chr11 25929565 25930071 -124853482 - LTR33 LTR ERVL 0 521 5 23 54 0 0 chr11 25931121 25931158 -124852395 + AT_rich Low_complexity Low_complexity 1 37 0 198 0 0 0 chr11 25932542 25932564 -124850989 + (TG)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr11 25932579 25932600 -124850953 + AT_rich Low_complexity Low_complexity 1 21 0 1410 185 70 0 chr11 25932611 25932854 -124850699 - AluSg SINE Alu -45 265 6 448 315 60 37 chr11 25933308 25933870 -124849683 - L1MEc LINE L1 -4576 1820 1246 540 199 44 72 chr11 25933976 25934177 -124849376 + L1MA8 LINE L1 6110 6312 0 216 182 23 0 chr11 25934904 25934948 -124848605 - L2 LINE L2 -4 3309 3265 295 315 134 35 chr11 25936167 25936399 -124847154 + MLT1L LTR MaLR 189 443 -172 7391 70 7 0 chr11 25936649 25938016 -124845537 - L1P2 LINE L1 -394 5760 4383 2512 153 44 12 chr11 25938717 25939220 -124844333 - L1MA4 LINE L1 0 6300 5782 311 179 9 0 chr11 25939220 25939326 -124844227 + (TA)n Simple_repeat Simple_repeat 1 107 0 2500 188 20 44 chr11 25939326 25940122 -124843431 - L1MA4 LINE L1 -508 5792 5006 395 323 59 5 chr11 25940250 25940436 -124843117 - MER76 LTR ERV -30 658 463 260 256 13 13 chr11 25940856 25940934 -124842619 - HERVL40 LTR ERVL -2249 3281 3204 189 0 0 0 chr11 25941675 25941696 -124841857 + (TG)n Simple_repeat Simple_repeat 1 21 0 558 280 0 0 chr11 25943193 25943311 -124840242 - FLAM_A SINE Alu -14 119 2 1042 277 87 25 chr11 25943953 25944357 -124839196 - L2 LINE L2 -1871 1443 1015 191 176 118 78 chr11 25944642 25944693 -124838860 + L2 LINE L2 3246 3298 -15 45 55 0 0 chr11 25945666 25945739 -124837814 + AT_rich Low_complexity Low_complexity 1 73 0 6636 114 31 15 chr11 25946075 25947129 -124836424 - MER11C LTR ERVK 0 1071 1 233 228 8 114 chr11 25947179 25947302 -124836251 - MIR SINE MIR -49 213 104 358 331 8 0 chr11 25947476 25947603 -124835950 - MIR SINE MIR -11 251 124 24 0 0 0 chr11 25947999 25948023 -124835530 + AT_rich Low_complexity Low_complexity 1 24 0 377 289 142 19 chr11 25948311 25948522 -124835031 + L2 LINE L2 2527 2763 -551 330 280 77 49 chr11 25948735 25948878 -124834675 - L1ME LINE L1 -5653 417 271 275 181 24 24 chr11 25949450 25949533 -124834020 - L1PA16 LINE L1 0 6166 6084 1520 121 23 19 chr11 25949633 25949890 -124833663 - L1PA16 LINE L1 -325 5841 5584 204 200 0 0 chr11 25950065 25950100 -124833453 + polypyrimidine Low_complexity Low_complexity 1 35 0 232 295 0 0 chr11 25950863 25950924 -124832629 + MER5A DNA MER1_type 129 189 0 230 217 0 0 chr11 25950972 25951018 -124832535 + L2 LINE L2 3268 3313 0 202 367 31 10 chr11 25952643 25952741 -124830812 - MIR3 SINE MIR -45 163 64 885 272 75 70 chr11 25952742 25953154 -124830399 + MLT2B1 LTR ERVL 3 416 -48 200 182 0 36 chr11 25953175 25953230 -124830323 + (CATA)n Simple_repeat Simple_repeat 4 56 0 1516 189 0 82 chr11 25953466 25953831 -124829722 - MER7A DNA MER2_type -13 333 1 294 330 10 0 chr11 25953848 25953948 -124829605 + MER5A DNA MER1_type 9 109 -80 2205 152 11 3 chr11 25954609 25954970 -124828583 + THE1B LTR MaLR 1 364 0 1227 325 41 20 chr11 25955190 25955683 -124827870 + L1M3d LINE L1 8 510 -5381 * 2521 277 95 33 chr11 25955652 25956986 -124826567 + L1 LINE L1 255 1373 -4518 1906 256 10 4 chr11 25956998 25957490 -124826063 + L1 LINE L1 3429 3923 -2047 453 296 107 33 chr11 25957509 25957752 -124825801 + L2 LINE L2 3019 3279 -34 32 43 0 0 chr11 25958187 25958233 -124825320 + AT_rich Low_complexity Low_complexity 1 46 0 1590 248 8 86 chr11 25959024 25959169 -124824384 + MLT2B1 LTR ERVL 1 156 -364 2218 152 66 22 chr11 25959169 25959577 -124823976 - MSTA LTR MaLR 0 428 3 1590 248 8 86 chr11 25959577 25959952 -124823601 + MLT2B1 LTR ERVL 156 480 -40 1473 158 63 14 chr11 25960497 25960782 -124822771 - AluSc SINE Alu -1 308 10 762 283 61 24 chr11 25961653 25961900 -124821653 + MIR SINE MIR 7 262 0 25 0 0 0 chr11 25962028 25962053 -124821500 + AT_rich Low_complexity Low_complexity 1 25 0 205 325 121 0 chr11 25963198 25963281 -124820272 + L2 LINE L2 3206 3298 -15 315 212 0 0 chr11 25963991 25964076 -124819477 + (TA)n Simple_repeat Simple_repeat 2 86 0 332 229 0 62 chr11 25964078 25964174 -124819379 - L1MC4 LINE L1 -1339 6703 6614 198 174 0 0 chr11 25964182 25964228 -124819325 + (TA)n Simple_repeat Simple_repeat 2 47 0 332 229 0 62 chr11 25964234 25964330 -124819223 - L1MC4 LINE L1 -1339 6703 6614 327 171 0 0 chr11 25964336 25964412 -124819141 + (TA)n Simple_repeat Simple_repeat 2 77 0 338 300 0 0 chr11 25964414 25964504 -124819049 - L1MC4 LINE L1 -1339 6703 6614 486 197 0 0 chr11 25964509 25964646 -124818907 + (TA)n Simple_repeat Simple_repeat 2 138 0 474 170 0 0 chr11 25965358 25965452 -124818101 + G-rich Low_complexity Low_complexity 5 98 0 24 32 0 0 chr11 25965743 25965774 -124817779 + AT_rich Low_complexity Low_complexity 1 31 0 2059 110 14 0 chr11 25965855 25966147 -124817406 - AluSp SINE Alu -17 296 1 204 229 0 0 chr11 25966318 25966353 -124817200 - L2 LINE L2 -16 3297 3263 358 287 148 5 chr11 25966804 25967013 -124816540 - L1MEc LINE L1 -1395 4820 4582 9048 39 1 0 chr11 25967350 25969222 -124814331 + L1PA4 LINE L1 4272 6148 -7 32 0 0 0 chr11 25969222 25969254 -124814299 + AT_rich Low_complexity Low_complexity 1 32 0 1005 291 39 28 chr11 25969393 25969926 -124813627 - L1MEc LINE L1 -1817 4398 3860 1186 269 57 29 chr11 25970091 25970813 -124812740 - L1MEc LINE L1 -2840 3375 2634 1970 292 85 42 chr11 25971038 25972550 -124811003 - L1MEc LINE L1 -3639 2576 1000 1760 214 28 3 chr11 25972550 25972906 -124810647 - MLT1A1 LTR MaLR 0 365 1 1970 292 85 42 chr11 25972906 25973215 -124810338 - L1MEc LINE L1 -5215 1000 706 225 215 32 21 chr11 25974685 25974778 -124808775 + (TA)n Simple_repeat Simple_repeat 2 95 0 422 359 6 12 chr11 25974857 25975024 -124808529 - MIR SINE MIR -70 192 27 234 269 60 37 chr11 25975281 25975415 -124808138 + MIR SINE MIR 113 249 -13 377 351 0 8 chr11 25975627 25975761 -124807792 + MLT2E LTR ERVL 40 172 -456 495 0 0 0 chr11 25975814 25975869 -124807684 + (TA)n Simple_repeat Simple_repeat 1 55 0 1368 179 88 28 chr11 25975887 25976172 -124807381 + AluJo SINE Alu 1 302 -10 1136 102 11 0 chr11 25976913 25977090 -124806463 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 581 192 11 28 chr11 25977091 25977273 -124806280 + GA-rich Low_complexity Low_complexity 2 180 0 394 207 0 18 chr11 25977284 25977395 -124806158 + GA-rich Low_complexity Low_complexity 3 111 0 261 354 31 0 chr11 25978148 25978244 -124805309 + MER81 DNA DNA 16 114 0 1921 104 0 39 chr11 25978420 25978699 -124804854 - AluSx SINE Alu -44 268 1 28 48 0 0 chr11 25978786 25978828 -124804725 + AT_rich Low_complexity Low_complexity 1 42 0 232 271 73 10 chr11 25979247 25979343 -124804210 - L1ME LINE L1 -672 5449 5348 292 299 65 36 chr11 25980533 25980687 -124802866 + MIR SINE MIR 38 194 -67 197 323 152 0 chr11 25980921 25981020 -124802533 - MIR SINE MIR -60 148 35 23 33 0 0 chr11 25981601 25981631 -124801922 + AT_rich Low_complexity Low_complexity 1 30 0 1516 233 13 66 chr11 25981865 25982260 -124801293 + MLT1D LTR MaLR 130 503 -2 225 302 12 24 chr11 25982288 25982457 -124801096 + (TA)n Simple_repeat Simple_repeat 2 168 0 2158 152 17 8 chr11 25982581 25982942 -124800611 + THE1B LTR MaLR 1 364 0 3102 103 5 0 chr11 25982942 25983378 -124800175 + THE1B-int LTR MaLR 1 438 -1142 2085 164 27 15 chr11 25983371 25984196 -124799357 + L1PB4 LINE L1 4802 6147 -9 * 2085 188 40 2 chr11 25984196 25984626 -124798927 + L1PB4 LINE L1 5706 6151 -5 488 320 59 68 chr11 25984767 25985192 -124798361 + L2 LINE L2 2876 3296 -17 198 71 0 0 chr11 25986154 25986182 -124797371 + (TG)n Simple_repeat Simple_repeat 2 29 0 227 354 91 0 chr11 25987431 25987530 -124796023 + L2 LINE L2 3147 3254 -18 2245 173 25 0 chr11 25987673 25988077 -124795476 - L1PBa LINE L1 -5814 1049 636 1071 184 20 0 chr11 25988079 25988275 -124795278 - L1PBa LINE L1 -6663 200 1 266 147 0 40 chr11 25988313 25988388 -124795165 - L1 LINE L1 -2999 3147 3076 687 239 29 13 chr11 25988521 25988760 -124794793 - L1 LINE L1 -3123 3023 2781 626 94 10 0 chr11 25988761 25988857 -124794696 + L1PB2 LINE L1 6055 6151 0 1390 113 31 0 chr11 25988880 25989102 -124794451 - L1PA15-16 LINE L1 -4870 1979 1751 * 1496 168 0 0 chr11 25989100 25989326 -124794227 - L1PA15-16 LINE L1 -6621 228 3 1564 150 91 28 chr11 25989828 25990181 -124793372 + THE1C LTR MaLR 1 375 0 266 391 78 0 chr11 25990436 25990615 -124792938 + L2 LINE L2 2824 3016 -297 964 136 6 6 chr11 25990836 25991013 -124792540 + (TTCCC)n Simple_repeat Simple_repeat 4 180 0 273 297 55 31 chr11 25992192 25992320 -124791233 - MLT1I LTR MaLR -266 143 13 464 284 8 0 chr11 25992686 25992820 -124790733 + MLT1J LTR MaLR 78 212 -299 498 165 12 0 chr11 25993046 25993131 -124790422 + AluS SINE Alu 1 86 -226 185 196 18 0 chr11 25993949 25994005 -124789548 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 185 353 191 7 chr11 25994011 25994147 -124789406 - MIR SINE MIR -68 194 34 429 350 39 10 chr11 25994408 25994614 -124788939 - MIR SINE MIR 0 262 51 221 261 65 33 chr11 25994598 25994690 -124788863 + MIR SINE MIR 93 187 -75 * 255 222 25 12 chr11 25995186 25995267 -124788286 + (TA)n Simple_repeat Simple_repeat 1 82 0 188 379 0 23 chr11 25995381 25995468 -124788085 + MIR SINE MIR 8 92 -170 32 101 0 0 chr11 25995614 25995723 -124787830 + AT_rich Low_complexity Low_complexity 1 109 0 23 54 0 0 chr11 25995972 25996009 -124787544 + AT_rich Low_complexity Low_complexity 1 37 0 636 338 39 25 chr11 25996340 25996695 -124786858 + L2 LINE L2 2447 2806 -508 181 368 78 17 chr11 25996763 25996994 -124786559 + L2 LINE L2 3032 3276 -37 287 360 54 22 chr11 25997031 25997253 -124786300 - MIR SINE MIR -31 231 3 198 0 0 0 chr11 25999205 25999227 -124784326 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 438 36 0 0 chr11 25999226 25999282 -124784271 + (TC)n Simple_repeat Simple_repeat 2 57 0 196 203 31 94 chr11 25999670 25999734 -124783819 + L3 LINE CR1 1510 1569 -8 2776 170 7 37 chr11 26001247 26001840 -124781713 - L1MA6 LINE L1 0 6300 5726 21 0 0 0 chr11 26001903 26001924 -124781629 + AT_rich Low_complexity Low_complexity 1 21 0 297 89 0 0 chr11 26002108 26002153 -124781400 + (TG)n Simple_repeat Simple_repeat 2 46 0 218 276 0 0 chr11 26003036 26003091 -124780462 + MIR SINE MIR 97 145 -63 21 0 0 0 chr11 26003146 26003167 -124780386 + AT_rich Low_complexity Low_complexity 1 21 0 583 155 10 0 chr11 26003539 26003636 -124779917 - AluJ/FLAM SINE Alu -214 98 1 202 327 45 64 chr11 26003872 26004028 -124779525 - L2 LINE L2 -223 3049 2897 3332 137 0 8 chr11 26004826 26005338 -124778215 - MER9 LTR ERVK 0 511 4 462 100 7 93 chr11 26005570 26005710 -124777843 - MER9 LTR ERVK -383 128 1 606 89 0 0 chr11 26006687 26006777 -124776776 + (TC)n Simple_repeat Simple_repeat 1 90 0 388 296 120 9 chr11 26007223 26007456 -124776097 + MER110A LTR ERV1 28 286 -182 2248 249 30 2 chr11 26007456 26007999 -124775554 + MER90 LTR ERV1 10 567 -8 23 33 0 0 chr11 26008304 26008334 -124775219 + AT_rich Low_complexity Low_complexity 1 30 0 2254 81 0 3 chr11 26008408 26008704 -124774849 - AluY SINE Alu -16 295 1 390 333 61 17 chr11 26008719 26008950 -124774603 + L2 LINE L2 2736 2976 -338 23 0 0 0 chr11 26009102 26009125 -124774428 + AT_rich Low_complexity Low_complexity 1 23 0 2045 122 17 0 chr11 26009240 26009528 -124774025 + AluSx SINE Alu 1 293 -19 267 360 9 9 chr11 26010633 26010744 -124772809 + MIR3 SINE MIR 65 175 -33 22 0 0 0 chr11 26010808 26010830 -124772723 + AT_rich Low_complexity Low_complexity 1 22 0 435 270 71 16 chr11 26011068 26011194 -124772359 - L2 LINE L2 -1 3312 3180 280 291 27 54 chr11 26011215 26011363 -124772190 + MLT1I LTR MaLR 28 171 -238 228 132 26 53 chr11 26013066 26013142 -124770411 + T-rich Low_complexity Low_complexity 3 76 0 255 31 0 0 chr11 26013573 26013605 -124769948 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2051 133 0 10 chr11 26015300 26015600 -124767953 - AluSx SINE Alu -15 297 1 214 167 0 0 chr11 26015848 26015890 -124767663 + (CAT)n Simple_repeat Simple_repeat 1 42 0 243 0 0 0 chr11 26015952 26015979 -124767574 + (TA)n Simple_repeat Simple_repeat 2 28 0 5281 60 3 0 chr11 26015981 26016653 -124766900 - L1PA5 LINE L1 -6 6148 5475 42739 51 3 2 chr11 26016661 26022813 -124760740 - L1PA3 LINE L1 0 6155 1 1754 75 16 0 chr11 26022780 26023115 -124760438 - L1P2 LINE L1 -628 5526 5187 * 6278 73 22 0 chr11 26023115 26023979 -124759574 + L1P LINE L1 3158 4040 -2106 1597 199 17 3 chr11 26024235 26024532 -124759021 + AluJo SINE Alu 1 301 -11 12171 174 24 9 chr11 26024572 26026800 -124756753 - Tigger1 DNA MER2_type -3 2415 156 5791 217 40 25 chr11 26026940 26029408 -124754145 - L1 LINE L1 -3829 2499 1 22 35 0 0 chr11 26029870 26029899 -124753654 + AT_rich Low_complexity Low_complexity 1 29 0 213 243 186 0 chr11 26030279 26030349 -124753204 - MIR SINE MIR -67 195 113 683 312 34 15 chr11 26031704 26031973 -124751580 - LTR16B LTR ERVL 0 464 191 642 232 0 76 chr11 26032017 26032215 -124751338 + MLT1E2 LTR MaLR 1 183 -443 482 269 70 45 chr11 26032494 26032780 -124750773 + LTR52 LTR ERVL 1 293 -128 615 241 179 12 chr11 26033215 26033556 -124749997 - MER69 DNA AcHobo -113 2413 2016 661 321 154 31 chr11 26033564 26033924 -124749629 - MER69 DNA AcHobo -1961 565 130 1149 249 48 28 chr11 26033924 26034282 -124749271 + MLT1A1 LTR MaLR 1 365 0 661 321 154 31 chr11 26034282 26034401 -124749152 - MER69 DNA AcHobo -2396 130 27 1738 265 73 47 chr11 26034944 26036166 -124747387 - L1ME2 LINE L1 -106 6058 4668 * 9978 225 34 48 chr11 26036155 26036819 -124746734 + L1M2 LINE L1 85 757 -6091 1916 173 106 3 chr11 26036819 26037207 -124746346 + MSTA LTR MaLR 1 428 0 9978 225 34 48 chr11 26037207 26037367 -124746186 + L1M2 LINE L1 757 918 -5930 2279 91 0 10 chr11 26037367 26037674 -124745879 - AluSc SINE Alu -5 304 1 9978 225 34 48 chr11 26037674 26037701 -124745852 + L1M2 LINE L1 918 944 -5904 339 203 0 0 chr11 26037701 26037765 -124745788 + MSTA LTR MaLR 365 428 0 9978 225 34 48 chr11 26037765 26041320 -124742233 + L1M2 LINE L1 944 4449 -2399 7728 111 18 1 chr11 26041317 26042514 -124741039 - L1P LINE L1 -1918 4228 3011 * 6599 65 17 6 chr11 26042514 26044118 -124739435 + L1PA7 LINE L1 4539 6154 0 3264 160 34 184 chr11 26044126 26045099 -124738454 + L1M2 LINE L1 4477 5208 -1640 1322 229 10 17 chr11 26045099 26045396 -124738157 + AluJo SINE Alu 5 299 -13 3264 160 34 184 chr11 26045396 26045719 -124737834 + L1M2 LINE L1 5208 5578 -1270 1122 174 103 20 chr11 26045726 26045979 -124737574 + MSTA LTR MaLR 3 276 -152 * 2687 143 10 0 chr11 26045976 26046382 -124737171 + MSTA LTR MaLR 17 426 -2 1132 186 20 112 chr11 26046383 26046830 -124736723 + L1M2 LINE L1 5695 6100 -748 * 1754 187 42 21 chr11 26046827 26047346 -124736207 + L1MA4A LINE L1 5136 5664 -639 589 156 19 25 chr11 26047346 26047506 -124736047 + GA-rich Low_complexity Low_complexity 4 162 0 2857 178 23 22 chr11 26047516 26048161 -124735392 + L1MA4A LINE L1 5653 6298 -5 281 324 36 9 chr11 26048161 26048272 -124735281 - L2 LINE L2 -21 3292 3179 23 0 0 0 chr11 26048345 26048368 -124735185 + AT_rich Low_complexity Low_complexity 1 23 0 748 291 120 10 chr11 26048370 26048888 -124734665 - L1MEc LINE L1 -1455 5085 4511 1848 291 89 16 chr11 26048925 26050212 -124733341 - L1MEc LINE L1 -2105 4435 3054 539 306 49 24 chr11 26050252 26050703 -124732850 - L1MEc LINE L1 -3547 2993 2532 1405 213 35 23 chr11 26050705 26050942 -124732611 + MLT2C1 LTR ERVL 1 245 -152 2012 102 0 0 chr11 26050942 26051208 -124732345 + AluSg SINE Alu 39 304 -6 1405 213 35 23 chr11 26051208 26051313 -124732240 + MLT2C1 LTR ERVL 245 347 -50 418 298 120 58 chr11 26051409 26051859 -124731694 - L1MEc LINE L1 -4148 2573 2096 668 239 118 51 chr11 26051880 26052252 -124731301 - L1MEc LINE L1 -4695 1845 1449 1887 137 16 13 chr11 26052830 26053137 -124730416 - AluSq SINE Alu -5 308 1 23 33 0 0 chr11 26053142 26053172 -124730381 + AT_rich Low_complexity Low_complexity 1 30 0 589 253 141 12 chr11 26053182 26053431 -124730122 - LTR16A1 LTR ERVL -7 450 170 306 296 167 0 chr11 26054714 26054822 -124728731 + MIR SINE MIR 126 251 -11 606 385 31 8 chr11 26055425 26055809 -124727744 + MLT1K LTR MaLR 196 588 0 231 313 30 0 chr11 26055902 26055969 -124727584 - L2 LINE L2 -19 3294 3226 56 39 0 0 chr11 26056193 26056270 -124727283 + AT_rich Low_complexity Low_complexity 1 77 0 3952 159 25 6 chr11 26056407 26057137 -124726416 - L1MA4A LINE L1 -5 6298 5555 1022 193 7 93 chr11 26057146 26057415 -124726138 - L1M2 LINE L1 -6602 247 2 195 346 30 20 chr11 26057644 26057745 -124725808 - L2 LINE L2 -991 2323 2222 273 237 26 13 chr11 26057984 26058060 -124725493 - MIR SINE MIR -102 160 84 281 314 0 0 chr11 26058213 26058299 -124725254 - MER103 DNA DNA -77 89 4 1014 133 14 2 chr11 26058691 26058986 -124724567 + THE1C LTR MaLR 1 368 -7 9257 121 40 42 chr11 26058990 26060572 -124722981 + THE1C-int LTR MaLR 2 1580 0 2304 119 24 16 chr11 26060574 26060944 -124722609 + THE1C LTR MaLR 3 375 0 240 235 15 0 chr11 26061054 26061122 -124722431 + (TA)n Simple_repeat Simple_repeat 2 70 0 452 337 51 0 chr11 26061324 26061502 -124722051 - MIR SINE MIR -67 195 9 794 217 19 0 chr11 26061877 26062034 -124721519 + FAM SINE Alu 7 166 -19 30 0 0 0 chr11 26062586 26062616 -124720937 + AT_rich Low_complexity Low_complexity 1 30 0 1327 178 99 76 chr11 26062956 26063485 -124720068 + MER21B LTR ERV1 1 566 -297 1196 171 55 137 chr11 26063485 26063975 -124719578 - LTR7 LTR ERV1 0 450 1 3470 121 14 13 chr11 26063977 26064531 -124719022 - HERVH LTR ERV1 -2 7711 7157 * 13133 136 9 7 chr11 26064524 26067179 -124716374 - HERVH LTR ERV1 -1697 6016 3421 223 329 0 13 chr11 26067193 26067272 -124716281 - L2 LINE L2 -68 3245 3168 25 0 0 0 chr11 26067330 26067355 -124716198 + AT_rich Low_complexity Low_complexity 1 25 0 206 345 104 18 chr11 26067740 26067960 -124715593 + L2 LINE L2 2946 3184 -129 324 280 24 54 chr11 26068094 26068262 -124715291 + L2 LINE L2 3149 3311 -2 459 307 0 40 chr11 26068396 26068546 -124715007 + MIR SINE MIR 37 180 -82 1858 219 63 11 chr11 26069406 26069581 -124713972 + MLT1C LTR MaLR 1 165 -302 333 0 0 0 chr11 26069581 26069618 -124713935 + (CA)n Simple_repeat Simple_repeat 2 38 0 1858 219 63 11 chr11 26069618 26069884 -124713669 + MLT1C LTR MaLR 165 465 -2 186 43 0 0 chr11 26070173 26070196 -124713357 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 442 197 54 88 chr11 26070242 26070389 -124713164 + LTR56 LTR ERV1 1 142 -303 1837 154 18 0 chr11 26070461 26070746 -124712807 - AluSx SINE Alu -22 290 1 1127 190 86 55 chr11 26070760 26071086 -124712467 - MER4D LTR ERV1 0 903 568 22 35 0 0 chr11 26072075 26072104 -124711449 + AT_rich Low_complexity Low_complexity 1 29 0 1624 246 139 38 chr11 26072108 26072922 -124710631 - L1ME2 LINE L1 -12 6152 5257 235 297 0 0 chr11 26072950 26073014 -124710539 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 1203 271 42 49 chr11 26073080 26073775 -124709778 - L1ME2 LINE L1 -1261 4885 4196 4504 181 31 23 chr11 26074176 26075117 -124708436 + L1MC1 LINE L1 5373 6320 -13 210 37 0 0 chr11 26075122 26075149 -124708404 + (TAA)n Simple_repeat Simple_repeat 2 28 0 268 254 51 136 chr11 26075692 26075869 -124707684 + MIR SINE MIR 17 178 -84 24 0 0 0 chr11 26076633 26076657 -124706896 + AT_rich Low_complexity Low_complexity 1 24 0 1820 32 0 0 chr11 26076657 26076878 -124706675 - L1PA5 LINE L1 -8 6146 5926 1605 22 0 0 chr11 26076878 26077063 -124706490 + L1PA5 LINE L1 5738 5922 -233 1760 169 26 0 chr11 26077063 26077335 -124706218 - AluJo SINE Alu -33 279 1 381 279 66 73 chr11 26077682 26077771 -124705782 + L2 LINE L2 3175 3264 -49 1846 141 7 42 chr11 26077771 26078077 -124705476 + AluSx SINE Alu 1 295 -17 381 279 66 73 chr11 26078077 26078123 -124705430 + L2 LINE L2 3264 3309 -4 223 297 29 94 chr11 26078920 26079058 -124704495 + L2 LINE L2 3140 3268 -4 200 224 0 35 chr11 26079317 26079375 -124704178 + CT-rich Low_complexity Low_complexity 1 56 0 2041 124 3 7 chr11 26079463 26079769 -124703784 + AluSg SINE Alu 1 305 -5 514 254 8 0 chr11 26080508 26080638 -124702915 - MER103 DNA DNA -2 164 34 1133 329 49 40 chr11 26080963 26081596 -124701957 + L2 LINE L2 2395 3030 -283 31 44 0 0 chr11 26081673 26081718 -124701835 + AT_rich Low_complexity Low_complexity 1 45 0 22 94 0 0 chr11 26081867 26081931 -124701622 + AT_rich Low_complexity Low_complexity 1 64 0 24 0 0 0 chr11 26082019 26082043 -124701510 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chr11 26082191 26082220 -124701333 + AT_rich Low_complexity Low_complexity 1 29 0 5171 162 18 20 chr11 26082333 26083509 -124700044 - L1PA15 LINE L1 -1 6164 5002 16738 39 0 0 chr11 26083609 26086426 -124697127 + L1PA3 LINE L1 3335 6151 -4 199 303 0 53 chr11 26086630 26086706 -124696847 - MIR3 SINE MIR -27 181 110 508 14 0 28 chr11 26086893 26086964 -124696589 + (TTATA)n Simple_repeat Simple_repeat 2 70 0 676 290 29 14 chr11 26088086 26088293 -124695260 + MIR SINE MIR 12 221 -41 213 154 0 0 chr11 26088391 26088430 -124695123 + (CA)n Simple_repeat Simple_repeat 1 39 0 366 156 42 0 chr11 26088431 26088527 -124695026 + GA-rich Low_complexity Low_complexity 1 100 0 1966 167 13 93 chr11 26089317 26089380 -124694173 - L1P LINE L1 -1082 6502 6436 2106 128 0 10 chr11 26089380 26089693 -124693860 - AluSg SINE Alu 0 310 1 1966 167 13 93 chr11 26089693 26090155 -124693398 - L1P LINE L1 -1148 6436 6019 8353 263 39 27 chr11 26090162 26094514 -124689039 - L1PA12 LINE L1 -3167 4417 9 261 146 0 0 chr11 26094575 26094623 -124688930 + (TA)n Simple_repeat Simple_repeat 1 48 0 3591 162 49 10 chr11 26094660 26095377 -124688176 - Tigger3(Golem) DNA MER2_type 0 3029 2285 547 204 0 0 chr11 26095380 26095473 -124688080 - Tigger3(Golem) DNA MER2_type -2922 107 15 21 57 0 0 chr11 26095688 26095723 -124687830 + AT_rich Low_complexity Low_complexity 1 35 0 412 310 91 9 chr11 26096359 26096591 -124686962 - LTR33A LTR ERVL -11 512 262 253 271 17 17 chr11 26096798 26096857 -124686696 - L2 LINE L2 0 3272 3214 1061 326 58 30 chr11 26097490 26098026 -124685527 + MLT1H1 LTR MaLR 3 553 -2 1218 167 129 8 chr11 26098458 26098698 -124684855 + AluJo SINE Alu 13 281 -31 252 59 0 0 chr11 26099318 26099352 -124684201 + (TATG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr11 26100149 26100171 -124683382 + AT_rich Low_complexity Low_complexity 1 22 0 310 292 172 21 chr11 26100788 26100980 -124682573 - MLT1H1 LTR MaLR -2 553 333 250 227 15 0 chr11 26101097 26101163 -124682390 + L1MC4 LINE L1 6634 6700 -1342 1284 117 86 5 chr11 26101163 26101385 -124682168 - L1PA13 LINE L1 -8 6155 5916 718 130 52 9 chr11 26101389 26101504 -124682049 + L1PA12 LINE L1 11 130 -7451 21 0 0 0 chr11 26101587 26101608 -124681945 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr11 26103154 26103182 -124680371 + AT_rich Low_complexity Low_complexity 1 28 0 196 268 0 18 chr11 26104355 26104411 -124679142 - MIR SINE MIR -77 185 131 * 202 330 52 31 chr11 26104409 26104506 -124679047 + MIR SINE MIR 6 104 -158 28 48 0 0 chr11 26104653 26104695 -124678858 + AT_rich Low_complexity Low_complexity 1 42 0 189 213 133 27 chr11 26104922 26104997 -124678556 - MIR SINE MIR -57 205 123 2039 192 49 5 chr11 26105297 26105704 -124677849 - MSTA LTR MaLR -3 425 1 703 136 91 0 chr11 26105756 26105866 -124677687 + FLAM_C SINE Alu 3 122 -21 282 97 16 32 chr11 26105878 26105940 -124677613 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 830 161 24 81 chr11 26106547 26106816 -124676737 - L1M2 LINE L1 -744 5402 5206 1959 168 25 25 chr11 26106816 26107180 -124676373 - THE1B LTR MaLR 0 364 1 10674 112 3 33 chr11 26107180 26107830 -124675723 - THE1B-int LTR MaLR 0 1580 912 6954 52 9 6 chr11 26107830 26109322 -124674231 + L1PA5 LINE L1 4657 6151 -3 10674 112 3 33 chr11 26109322 26110300 -124673253 - THE1B-int LTR MaLR -668 912 1 1953 164 22 25 chr11 26110300 26110665 -124672888 - THE1B LTR MaLR 0 364 1 1719 212 46 23 chr11 26110666 26111104 -124672449 - L1M2 LINE L1 -937 5209 4762 1071 190 58 0 chr11 26111114 26111319 -124672234 + L1M3 LINE L1 5492 5708 -460 1631 180 7 14 chr11 26111860 26112149 -124671404 - AluJo SINE Alu -25 287 1 295 377 73 5 chr11 26112668 26112888 -124670665 + MIR SINE MIR 22 256 -6 1789 174 44 0 chr11 26112980 26113343 -124670210 - L1MA4A LINE L1 -14 6289 5911 1306 164 19 120 chr11 26113343 26113504 -124670049 + L1MA5 LINE L1 5623 5736 -564 1212 208 4 0 chr11 26113504 26113745 -124669808 + L1PA16 LINE L1 5906 6147 -19 1306 164 19 120 chr11 26113745 26113907 -124669646 + L1MA5 LINE L1 5736 5913 -387 980 211 4 32 chr11 26114261 26114503 -124669050 + Tigger7 DNA MER2_type 1 298 -252 * 1949 171 46 0 chr11 26114499 26114850 -124668703 + Tigger7 DNA MER2_type 2121 2487 0 301 377 105 40 chr11 26115267 26115543 -124668010 + L2 LINE L2 2979 3272 0 540 344 39 16 chr11 26115726 26115982 -124667571 + MIR SINE MIR 1 262 0 224 331 50 50 chr11 26116025 26116164 -124667389 - MIR SINE MIR -99 163 25 564 258 7 13 chr11 26118009 26118164 -124665389 + MER97b DNA MER1_type? 25 178 -875 428 377 13 18 chr11 26118341 26118569 -124664984 - MIR SINE MIR -32 230 4 195 310 22 88 chr11 26118609 26118835 -124664718 + L2 LINE L2 1447 1657 -1657 428 268 1 4 chr11 26119623 26119752 -124663801 + L1MC/D LINE L1 5705 5829 -346 696 299 54 45 chr11 26119802 26120137 -124663416 + MLT1I LTR MaLR 70 407 -2 747 324 55 26 chr11 26120198 26120581 -124662972 - HERV16 LTR ERVL -4106 890 497 439 272 27 14 chr11 26120850 26120997 -124662556 + L1MB8 LINE L1 6021 6169 -9 2327 150 16 5 chr11 26121170 26121597 -124661956 - L1MA6 LINE L1 0 6300 5869 255 164 91 0 chr11 26123090 26123145 -124660408 - L1PA16 LINE L1 0 6166 6107 4352 267 34 25 chr11 26123153 26123725 -124659828 - L1PA13 LINE L1 -3852 2945 2379 4832 37 3 7 chr11 26123725 26124320 -124659233 - L1PA4 LINE L1 -2 6153 5561 4352 267 34 25 chr11 26124320 26126121 -124657432 - L1PA13 LINE L1 -4418 2379 44 393 315 96 23 chr11 26126550 26126769 -124656784 - MIR SINE MIR -25 237 3 25 31 0 0 chr11 26127176 26127208 -124656345 + AT_rich Low_complexity Low_complexity 1 32 0 195 42 0 0 chr11 26127527 26127551 -124656002 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 242 208 0 52 chr11 26128118 26128214 -124655339 - L1MC4 LINE L1 -1339 6703 6613 1116 145 0 0 chr11 26128238 26128404 -124655149 + AluSq SINE Alu 131 296 -17 22 0 0 0 chr11 26128965 26128987 -124654566 + AT_rich Low_complexity Low_complexity 1 22 0 1302 209 46 20 chr11 26129381 26129683 -124653870 + AluJo SINE Alu 1 310 -2 265 406 42 9 chr11 26130088 26130300 -124653253 + MIR SINE MIR 6 224 -38 1110 253 34 57 chr11 26130492 26130844 -124652709 - MLT1H LTR MaLR -200 349 6 287 235 209 9 chr11 26131290 26131405 -124652148 + L2 LINE L2 3134 3271 -1 231 36 0 0 chr11 26131452 26131480 -124652073 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 185 0 40 0 chr11 26132508 26132533 -124651020 + (TAAAAA)n Simple_repeat Simple_repeat 6 31 0 262 296 64 32 chr11 26134150 26134275 -124649278 + L2 LINE L2 3185 3313 0 21 57 0 0 chr11 26135085 26135120 -124648433 + AT_rich Low_complexity Low_complexity 1 35 0 1374 225 32 11 chr11 26136031 26136400 -124647153 - L1MC3 LINE L1 -16 7769 7393 213 279 0 16 chr11 26136873 26136934 -124646619 - L2 LINE L2 -2632 682 623 1631 180 18 0 chr11 26137918 26138196 -124645357 + AluJo SINE Alu 11 293 -19 183 42 0 0 chr11 26138330 26138354 -124645199 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 330 357 48 40 chr11 26138369 26138596 -124644957 - MLT1L LTR MaLR -185 430 202 430 306 11 61 chr11 26139745 26139844 -124643709 + MER45B DNA AcHobo 2 90 -1491 2030 103 21 3 chr11 26139844 26140134 -124643419 - AluSg SINE Alu -15 295 1 430 306 11 61 chr11 26140134 26140214 -124643339 + MER45B DNA AcHobo 90 172 -1409 2109 217 67 21 chr11 26140223 26140790 -124642763 + MER45B DNA AcHobo 448 1040 0 400 354 49 13 chr11 26140815 26141225 -124642328 + ERVL LTR ERVL 4866 5287 -367 435 284 75 98 chr11 26141446 26141875 -124641678 + LTR16B LTR ERVL 44 462 -2 5119 33 0 0 chr11 26141894 26142496 -124641057 + L1PA3 LINE L1 5551 6152 -3 26 0 0 0 chr11 26142496 26142522 -124641031 + AT_rich Low_complexity Low_complexity 1 26 0 366 311 79 17 chr11 26142550 26142727 -124640826 - MIR SINE MIR -28 234 47 2151 120 0 22 chr11 26142812 26143129 -124640424 + AluSx SINE Alu 2 311 -1 301 123 0 62 chr11 26144568 26144633 -124638920 + L1PA6 LINE L1 6094 6154 0 180 350 17 60 chr11 26144666 26144783 -124638770 - MIR SINE MIR -86 176 65 277 623 0 6 chr11 26145079 26145254 -124638299 + polypyrimidine Low_complexity Low_complexity 2 175 0 267 31 0 0 chr11 26145254 26145286 -124638267 + (CA)n Simple_repeat Simple_repeat 1 32 0 32 0 0 0 chr11 26146316 26146348 -124637205 + AT_rich Low_complexity Low_complexity 1 32 0 232 183 0 17 chr11 26146350 26146410 -124637143 + LTR66 LTR ERVL 399 457 -153 * 286 333 20 0 chr11 26146379 26146481 -124637072 - MER117 DNA MER1_type -12 185 82 28 48 0 0 chr11 26147246 26147288 -124636265 + AT_rich Low_complexity Low_complexity 1 42 0 236 135 0 58 chr11 26147459 26147511 -124636042 - L1MA4A LINE L1 -30 6273 6225 309 315 110 30 chr11 26148268 26148468 -124635085 - L3 LINE CR1 -10 1567 1352 233 309 0 21 chr11 26148538 26148635 -124634918 + CT-rich Low_complexity Low_complexity 1 95 0 23 33 0 0 chr11 26150409 26150439 -124633114 + AT_rich Low_complexity Low_complexity 1 30 0 238 349 76 36 chr11 26151118 26151422 -124632131 + L2 LINE L2 2528 2843 -471 200 298 35 18 chr11 26152206 26152263 -124631290 - MER5B DNA MER1_type 0 178 121 27 49 0 0 chr11 26152426 26152467 -124631086 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr11 26153608 26153633 -124629920 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr11 26153842 26153863 -124629690 + AT_rich Low_complexity Low_complexity 1 21 0 570 288 13 9 chr11 26153875 26154208 -124629345 - L1ME2 LINE L1 -26 6138 5761 23 33 0 0 chr11 26154221 26154251 -124629302 + AT_rich Low_complexity Low_complexity 1 30 0 419 219 66 17 chr11 26154518 26154671 -124628882 + L1MA7 LINE L1 6126 6289 -2 261 130 0 0 chr11 26155030 26155076 -124628477 + L1MB2 LINE L1 6119 6164 -7 763 58 0 0 chr11 26155109 26155212 -124628341 - L1PA8 LINE L1 0 6172 6070 205 328 30 45 chr11 26155519 26155653 -124627900 + MIR SINE MIR 57 188 -74 25 0 0 0 chr11 26155924 26155949 -124627604 + AT_rich Low_complexity Low_complexity 1 25 0 344 313 0 0 chr11 26156195 26156291 -124627262 - L1MC4 LINE L1 -1333 6709 6614 281 163 0 0 chr11 26156293 26156342 -124627211 - AluJ/FLAM SINE Alu -211 91 43 38 0 0 0 chr11 26156546 26156584 -124626969 + AT_rich Low_complexity Low_complexity 1 38 0 535 249 13 94 chr11 26156703 26156936 -124626617 - L2 LINE L2 -5 3308 3095 2024 78 7 4 chr11 26156940 26157211 -124626342 + AluY SINE Alu 1 272 -39 2417 83 3 3 chr11 26157322 26157661 -124625892 + L1PA7 LINE L1 5816 6154 0 269 284 129 39 chr11 26157720 26157875 -124625678 + MIR SINE MIR 78 246 -16 2085 128 73 14 chr11 26159220 26159564 -124623989 + THE1B LTR MaLR 1 364 0 58 70 0 0 chr11 26159587 26159701 -124623852 + AT_rich Low_complexity Low_complexity 1 114 0 2299 96 7 0 chr11 26160145 26160448 -124623105 - AluSp SINE Alu -8 305 1 223 140 40 0 chr11 26161115 26161165 -124622388 + (TA)n Simple_repeat Simple_repeat 1 52 0 398 269 0 0 chr11 26161177 26161285 -124622268 - L1ME LINE L1 -356 5810 5703 2054 128 20 0 chr11 26161287 26161584 -124621969 + AluSq SINE Alu 1 303 -10 767 200 0 11 chr11 26161597 26161777 -124621776 + GA-rich Low_complexity Low_complexity 1 178 0 1577 255 73 26 chr11 26161779 26162654 -124620899 - L1ME LINE L1 -663 5579 4795 818 250 15 0 chr11 26163681 26163877 -124619676 - L1ME1 LINE L1 -140 6026 5828 225 94 0 0 chr11 26164049 26164081 -124619472 + (TA)n Simple_repeat Simple_repeat 1 32 0 235 95 0 0 chr11 26164084 26164126 -124619427 - LTR66 LTR ERVL -171 439 398 * 240 91 0 0 chr11 26164091 26164135 -124619418 + LTR66 LTR ERVL 395 438 -172 1047 252 28 8 chr11 26164170 26164420 -124619133 - MLT2D LTR ERVL -57 357 103 495 218 32 0 chr11 26165080 26165204 -124618349 + MLT2C1 LTR ERVL 1 128 -269 244 200 15 0 chr11 26165220 26165285 -124618268 - L1MA8 LINE L1 -5 6286 6221 238 205 74 131 chr11 26165285 26165407 -124618146 + MLT2C1 LTR ERVL 124 238 -159 1514 190 119 9 chr11 26165422 26165843 -124617710 - L1 LINE L1 -1667 4479 4013 3283 151 57 17 chr11 26165843 26165916 -124617637 + L1MA5A LINE L1 5615 5684 -613 1926 160 22 71 chr11 26165916 26166366 -124617187 - MSTB1 LTR MaLR -2 430 3 3283 151 57 17 chr11 26166366 26166943 -124616610 + L1MA5A LINE L1 5684 6291 -6 282 269 13 26 chr11 26166959 26167037 -124616516 + MLT2C1 LTR ERVL 234 310 -87 24 32 0 0 chr11 26167457 26167488 -124616065 + AT_rich Low_complexity Low_complexity 1 31 0 267 206 27 14 chr11 26167503 26167576 -124615977 + (TA)n Simple_repeat Simple_repeat 2 75 0 24388 45 42 2 chr11 26167662 26170781 -124612772 + L1P LINE L1 1 3244 -2902 326 309 37 0 chr11 26171703 26171784 -124611769 - L2 LINE L2 -15 3257 3174 361 342 123 18 chr11 26172953 26173181 -124610372 - MIR SINE MIR -10 252 1 1967 137 0 13 chr11 26173233 26173533 -124610020 + AluSx SINE Alu 1 296 -16 1591 227 54 33 chr11 26173686 26174078 -124609475 - MER101B LTR ERV1 -170 400 1 1393 280 25 2 chr11 26174094 26174537 -124609016 - L1M4 LINE L1 -996 5150 4698 222 37 0 0 chr11 26174852 26174879 -124608674 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1847 164 0 0 chr11 26174879 26175159 -124608394 - AluSx SINE Alu -32 280 1 831 134 0 6 chr11 26175215 26175372 -124608181 + AluSx SINE Alu 44 286 -26 201 74 0 0 chr11 26175377 26175404 -124608149 + (TAA)n Simple_repeat Simple_repeat 2 28 0 26 50 0 0 chr11 26175500 26175540 -124608013 + AT_rich Low_complexity Low_complexity 1 40 0 261 261 76 42 chr11 26176501 26176620 -124606933 + L1ME3A LINE L1 6046 6168 -2 22 0 0 0 chr11 26176739 26176761 -124606792 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr11 26176928 26176962 -124606591 + AT_rich Low_complexity Low_complexity 1 34 0 206 244 0 0 chr11 26177551 26177596 -124605957 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 304 346 77 58 chr11 26178202 26178667 -124604886 - L2 LINE L2 -15 3298 2825 2315 146 6 3 chr11 26181481 26181844 -124601709 + THE1B LTR MaLR 1 364 0 381 335 24 30 chr11 26182081 26182245 -124601308 + MER5B DNA MER1_type 7 169 -9 23 68 0 0 chr11 26182775 26182819 -124600734 + AT_rich Low_complexity Low_complexity 1 44 0 229 301 0 0 chr11 26183257 26183330 -124600223 - L2 LINE L2 -247 3066 2994 352 317 129 17 chr11 26183334 26183738 -124599815 - L2 LINE L2 -1000 2314 1866 22 35 0 0 chr11 26183952 26183981 -124599572 + AT_rich Low_complexity Low_complexity 1 29 0 730 192 7 0 chr11 26183983 26184134 -124599419 - L1MB3 LINE L1 -17 6166 6015 228 333 14 0 chr11 26184233 26184305 -124599248 - MIR SINE MIR -133 129 57 198 0 0 0 chr11 26184422 26184444 -124599109 + (A)n Simple_repeat Simple_repeat 1 22 0 1734 162 0 3 chr11 26184453 26184766 -124598787 + AluSx SINE Alu 1 312 0 1798 176 60 8 chr11 26185035 26185399 -124598154 - MLT1B LTR MaLR 0 390 8 663 158 20 41 chr11 26186221 26186367 -124597186 + AluSg/x SINE Alu 168 310 0 648 304 15 34 chr11 26187511 26187715 -124595838 - MIR SINE MIR -38 224 25 2115 87 16 23 chr11 26188974 26189283 -124594270 - AluSq SINE Alu -6 307 1 6418 175 16 25 chr11 26189600 26189713 -124593840 + Tigger1 DNA MER2_type 1172 1284 -1134 2481 49 0 3 chr11 26189713 26190017 -124593536 - AluY SINE Alu -8 303 1 6418 175 16 25 chr11 26190017 26191087 -124592466 + Tigger1 DNA MER2_type 1284 2346 -72 1642 155 43 43 chr11 26191087 26191461 -124592092 + THE1C LTR MaLR 1 374 -1 6418 175 16 25 chr11 26191461 26191516 -124592037 + Tigger1 DNA MER2_type 2346 2400 -18 296 350 111 9 chr11 26193133 26193350 -124590203 - MIR SINE MIR -18 244 6 1120 246 48 51 chr11 26194892 26195245 -124588308 - MLT1A1 LTR MaLR -3 362 11 375 23 0 0 chr11 26195251 26195295 -124588258 + (GA)n Simple_repeat Simple_repeat 1 44 0 1335 133 18 22 chr11 26195303 26195528 -124588025 - AluSg/x SINE Alu -11 299 76 23 0 0 0 chr11 26195533 26195556 -124587997 + AT_rich Low_complexity Low_complexity 1 23 0 220 337 48 42 chr11 26196098 26196264 -124587289 + MIR SINE MIR 95 261 -1 388 193 37 12 chr11 26196321 26196482 -124587071 + (TA)n Simple_repeat Simple_repeat 2 166 0 1381 209 23 0 chr11 26196488 26196747 -124586806 + AluJb SINE Alu 4 268 -44 22 0 0 0 chr11 26197398 26197420 -124586133 + AT_rich Low_complexity Low_complexity 1 22 0 181 312 55 37 chr11 26197846 26197955 -124585598 + L2 LINE L2 3192 3302 -11 2972 55 3 0 chr11 26198320 26198704 -124584849 - L1PA4 LINE L1 -1 6154 5770 4794 41 9 0 chr11 26198881 26199876 -124583677 - L1PA4 LINE L1 -366 5789 4790 2193 84 7 16 chr11 26199877 26200186 -124583367 + AluY SINE Alu 1 306 -5 3651 167 35 7 chr11 26200734 26201471 -124582082 + L1MA4 LINE L1 5542 6299 -1 480 248 81 78 chr11 26201495 26201817 -124581736 + L1M4b LINE L1 1213 1535 -5324 986 247 78 84 chr11 26201913 26202861 -124580692 - L1M4 LINE L1 -2570 3576 2635 1867 245 20 83 chr11 26202873 26203794 -124579759 + L1M4b LINE L1 2787 3764 -3193 1458 188 38 41 chr11 26203794 26204086 -124579467 + AluJo SINE Alu 1 291 -21 1867 245 20 83 chr11 26204086 26204101 -124579452 + L1M4b LINE L1 3764 3778 -3179 344 77 19 0 chr11 26204101 26204153 -124579400 + (TA)n Simple_repeat Simple_repeat 2 54 0 1867 245 20 83 chr11 26204153 26204357 -124579196 + L1M4b LINE L1 3778 3846 -3111 1943 139 3 7 chr11 26204360 26204661 -124578892 + AluSg SINE Alu 1 300 -10 960 214 50 56 chr11 26204669 26204972 -124578581 + L1M4b LINE L1 4583 4883 -2074 1116 269 69 7 chr11 26204973 26205378 -124578175 - L1MD2 LINE L1 -271 6348 5919 1771 223 46 3 chr11 26205385 26205694 -124577859 - LTR2 LTR ERV1 0 449 118 387 0 0 0 chr11 26205694 26205737 -124577816 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1771 223 46 3 chr11 26205737 26205818 -124577735 - LTR2 LTR ERV1 -331 118 42 2179 167 8 5 chr11 26205895 26206416 -124577137 - HERVE LTR ERV1 -2 7811 7211 2420 254 68 37 chr11 26206422 26207387 -124576166 - L1MD2 LINE L1 -710 5909 4881 1297 252 0 13 chr11 26207387 26207700 -124575853 - AluJo SINE Alu -3 309 1 2420 254 68 37 chr11 26207700 26208244 -124575309 - L1MD2 LINE L1 -1738 4881 4355 389 308 0 8 chr11 26209043 26209176 -124574377 - L1MD2 LINE L1 -2051 4355 4224 219 143 26 65 chr11 26209187 26209264 -124574289 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 1301 281 67 5 chr11 26209345 26209794 -124573759 - L1MD2 LINE L1 -5240 1169 693 22 0 0 0 chr11 26211707 26211729 -124571824 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr11 26211862 26211889 -124571664 + AT_rich Low_complexity Low_complexity 1 27 0 753 161 24 8 chr11 26214010 26214134 -124569419 + MSTB LTR MaLR 301 426 0 351 306 68 52 chr11 26216672 26216924 -124566629 + MIR SINE MIR 4 259 -3 645 288 58 96 chr11 26218068 26218807 -124564746 + L2 LINE L2 2606 3307 -6 189 211 0 167 chr11 26218873 26218963 -124564590 + MIR SINE MIR 30 104 -158 1350 207 57 4 chr11 26219728 26220008 -124563545 + MER68 LTR ERV1 11 305 -257 384 174 10 10 chr11 26220017 26220115 -124563438 + L1M4b LINE L1 5213 5310 -1647 958 191 83 66 chr11 26220120 26220361 -124563192 + MER68 LTR ERV1 316 560 -2 4017 152 7 7 chr11 26220412 26221386 -124562167 + L1PB1 LINE L1 4909 5883 -268 32 26 0 0 chr11 26221387 26221426 -124562127 + AT_rich Low_complexity Low_complexity 1 39 0 1489 146 18 33 chr11 26221426 26221701 -124561852 + L1PB1 LINE L1 5879 6149 -2 379 336 149 12 chr11 26222075 26222316 -124561237 + L2 LINE L2 2846 3119 -194 210 314 95 45 chr11 26222679 26222883 -124560670 - MIR SINE MIR -14 248 34 24 0 0 0 chr11 26223814 26223838 -124559715 + AT_rich Low_complexity Low_complexity 1 24 0 2596 80 97 7 chr11 26224182 26224593 -124558960 - LTR7 LTR ERV1 -2 448 1 2273 104 62 13 chr11 26224593 26224967 -124558586 - HERVH LTR ERV1 0 7713 7322 1169 144 58 0 chr11 26224965 26225173 -124558380 - HERVH LTR ERV1 -1894 5819 5600 * 8471 116 6 5 chr11 26225174 26227245 -124556308 - HERVH LTR ERV1 -2287 4242 3140 1243 120 0 34 chr11 26227224 26227433 -124556120 - HERVH LTR ERV1 -4718 2995 2794 * 3551 41 0 0 chr11 26227592 26228032 -124555521 - L1P LINE L1 -3775 2371 1932 7706 43 2 2 chr11 26228034 26229759 -124553794 + L1PA2 LINE L1 4428 6153 -2 505 172 21 0 chr11 26230491 26230584 -124552969 - Tigger1 DNA MER2_type -1152 1266 1172 2276 119 0 0 chr11 26230901 26231213 -124552340 + AluSx SINE Alu 1 312 0 213 374 40 0 chr11 26231748 26231847 -124551706 - MIR SINE MIR -131 131 29 1571 175 9 4 chr11 26233082 26233514 -124550039 + LTR45 LTR ERV1 1 525 0 444 349 64 53 chr11 26233566 26234036 -124549517 + MLT1K LTR MaLR 92 566 -22 764 205 26 13 chr11 26234325 26234481 -124549072 + AluJo SINE Alu 121 278 -34 2059 132 0 30 chr11 26235002 26235306 -124548247 + AluSx SINE Alu 2 296 -16 24 32 0 0 chr11 26235856 26235887 -124547666 + AT_rich Low_complexity Low_complexity 1 31 0 632 374 98 3 chr11 26235911 26236259 -124547294 + L2 LINE L2 2579 2959 -355 218 307 57 85 chr11 26236294 26236506 -124547047 + L2 LINE L2 3103 3308 -5 592 291 22 11 chr11 26236800 26236982 -124546571 + LTR41 LTR ERVL 4 187 -586 396 259 76 64 chr11 26237134 26237385 -124546168 + LTR41 LTR ERVL 510 763 -10 1230 145 55 5 chr11 26237435 26237635 -124545918 - THE1B LTR MaLR 0 364 155 2506 39 0 3 chr11 26237635 26237943 -124545610 + AluY SINE Alu 1 307 -4 1363 117 20 0 chr11 26237943 26238139 -124545414 + AluSg/x SINE Alu 78 277 -35 582 179 34 0 chr11 26238292 26238409 -124545144 - L1MA7 LINE L1 -11 6280 6160 612 188 8 8 chr11 26238464 26238597 -124544956 + L1MB1 LINE L1 6036 6168 0 351 289 72 28 chr11 26238677 26238857 -124544696 - L2 LINE L2 -426 2888 2701 22 0 0 0 chr11 26239366 26239388 -124544165 + GC_rich Low_complexity Low_complexity 1 22 0 3295 264 30 4 chr11 26239999 26241016 -124542537 + L1P LINE L1 3077 4120 -2026 1132 66 0 0 chr11 26241317 26241454 -124542099 + (T)n Simple_repeat Simple_repeat 1 137 0 190 367 18 0 chr11 26241900 26242009 -124541544 + MIR SINE MIR 151 261 -1 388 193 37 12 chr11 26242066 26242227 -124541326 + (TA)n Simple_repeat Simple_repeat 2 166 0 1348 212 23 0 chr11 26242233 26242492 -124541061 + AluJb SINE Alu 4 268 -44 24 0 0 0 chr11 26242967 26242991 -124540562 + AT_rich Low_complexity Low_complexity 1 24 0 4664 99 4 3 chr11 26244481 26245167 -124538386 + HERVH LTR ERV1 3304 3990 -3723 1464 218 47 12 chr11 26245153 26245613 -124537940 + HERVH LTR ERV1 3954 5141 -1950 * 1118 244 48 51 chr11 26246083 26246436 -124537117 - MLT1A1 LTR MaLR -3 362 11 447 19 0 0 chr11 26246442 26246494 -124537059 + (GA)n Simple_repeat Simple_repeat 1 52 0 180 0 0 0 chr11 26246502 26246522 -124537031 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1301 128 0 25 chr11 26246524 26246727 -124536826 - AluSg/x SINE Alu -37 275 78 23 0 0 0 chr11 26246732 26246755 -124536798 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr11 26247357 26247384 -124536169 + (TG)n Simple_repeat Simple_repeat 2 28 0 676 290 29 14 chr11 26247751 26247958 -124535595 + MIR SINE MIR 12 221 -41 195 162 0 0 chr11 26248058 26248095 -124535458 + (CA)n Simple_repeat Simple_repeat 1 37 0 211 203 14 54 chr11 26248098 26248172 -124535381 + GA-rich Low_complexity Low_complexity 1 71 0 1833 211 22 20 chr11 26248519 26248978 -124534575 + L1 LINE L1 4817 5276 -870 1085 203 19 11 chr11 26248992 26249253 -124534300 + L1 LINE L1 5068 5330 -816 272 145 29 14 chr11 26249702 26249771 -124533782 + L1M LINE L1 5261 5330 -970 296 180 33 0 chr11 26249784 26249845 -124533708 - HsTC2 DNA Tc2 -1825 73 11 3913 124 55 11 chr11 26250010 26250476 -124533077 - L1PB2 LINE L1 -4 6147 5642 1410 182 146 9 chr11 26250476 26250806 -124532747 - THE1C LTR MaLR 0 375 1 3913 124 55 11 chr11 26250806 26250994 -124532559 - L1PB2 LINE L1 -509 5642 5464 226 335 35 58 chr11 26252192 26252365 -124531188 - MLT1K LTR MaLR -411 177 9 209 343 14 14 chr11 26252916 26252989 -124530564 + L2 LINE L2 3192 3264 -49 201 302 9 9 chr11 26253064 26253170 -124530383 + (TA)n Simple_repeat Simple_repeat 2 107 0 25 31 0 0 chr11 26253316 26253348 -124530205 + AT_rich Low_complexity Low_complexity 1 32 0 277 372 31 49 chr11 26253813 26254036 -124529517 + MER20B DNA MER1_type 3 221 -562 507 275 111 29 chr11 26254082 26254564 -124528989 + MER20B DNA MER1_type 226 783 0 708 271 5 48 chr11 26256265 26256472 -124527081 + MER58A DNA MER1_type 26 223 -1 21 0 0 0 chr11 26256686 26256707 -124526846 + AT_rich Low_complexity Low_complexity 1 21 0 183 167 104 21 chr11 26256800 26256848 -124526705 - L2 LINE L2 0 3313 3262 250 254 0 0 chr11 26258102 26258169 -124525384 + (TA)n Simple_repeat Simple_repeat 2 68 0 208 143 0 0 chr11 26258183 26258218 -124525335 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1043 290 27 47 chr11 26258309 26258788 -124524765 + L1M2a LINE L1 3 760 -6408 5056 169 29 4 chr11 26258788 26259687 -124523866 - HSMAR2 DNA Mariner -52 1250 330 186 345 17 26 chr11 26260359 26260475 -124523078 + MIR SINE MIR 92 206 -56 214 295 161 18 chr11 26261142 26261254 -124522299 + MIR SINE MIR 128 255 -7 717 228 8 95 chr11 26262050 26262291 -124521262 - LTR37A LTR ERV1 -189 237 18 369 251 189 6 chr11 26262471 26262661 -124520892 + MIR SINE MIR 40 261 -1 245 280 32 32 chr11 26263022 26263115 -124520438 - MIR SINE MIR 0 262 170 232 337 11 0 chr11 26263222 26263314 -124520239 - L2 LINE L2 -276 2996 2904 186 347 40 81 chr11 26264237 26264410 -124519143 + L2 LINE L2 2918 3083 -189 345 178 0 0 chr11 26265057 26265130 -124518423 + L1M4 LINE L1 3875 3947 -2199 360 132 41 8 chr11 26265137 26265258 -124518295 + (TA)n Simple_repeat Simple_repeat 2 126 0 1711 266 19 51 chr11 26265258 26266161 -124517392 + L1M4 LINE L1 3954 4807 -1339 2012 121 0 22 chr11 26266425 26266739 -124516814 - AluSx SINE Alu -5 307 1 21 0 0 0 chr11 26266831 26266852 -124516701 + AT_rich Low_complexity Low_complexity 1 21 0 385 353 17 0 chr11 26267462 26267635 -124515918 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 23 97 0 0 chr11 26268331 26268403 -124515150 + AT_rich Low_complexity Low_complexity 1 72 0 26 30 0 0 chr11 26268424 26268457 -124515096 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr11 26268472 26268508 -124515045 + AT_rich Low_complexity Low_complexity 1 36 0 1540 219 69 11 chr11 26268541 26269164 -124514389 - L1MC3 LINE L1 -13 7772 7002 462 250 230 7 chr11 26269132 26269284 -124514269 - L1M4 LINE L1 -6188 354 169 * 22 0 0 0 chr11 26269932 26269954 -124513599 + AT_rich Low_complexity Low_complexity 1 22 0 517 308 24 0 chr11 26270024 26270193 -124513360 - MER5B DNA MER1_type 0 178 6 528 16 0 0 chr11 26270927 26270988 -124512565 + (CA)n Simple_repeat Simple_repeat 2 62 0 2929 73 62 2 chr11 26271701 26272124 -124511429 - LTR7 LTR ERV1 -2 448 1 2127 213 0 34 chr11 26272131 26272634 -124510919 - L1PB4 LINE L1 -2421 3725 3240 7675 197 15 11 chr11 26272644 26275059 -124508494 + L1PB4 LINE L1 3712 6145 -11 1271 161 54 9 chr11 26275075 26275299 -124508254 - AluJb SINE Alu -21 291 58 21 57 0 0 chr11 26275361 26275396 -124508157 + AT_rich Low_complexity Low_complexity 1 35 0 243 174 43 0 chr11 26275437 26275483 -124508070 - AluJb SINE Alu -252 48 1 204 313 84 61 chr11 26276275 26276406 -124507147 + MIR SINE MIR 21 154 -108 660 276 68 26 chr11 26276462 26276708 -124506845 + MIR SINE MIR 1 257 -5 203 238 25 12 chr11 26276787 26276867 -124506686 + (TA)n Simple_repeat Simple_repeat 2 82 0 206 160 20 0 chr11 26276872 26276922 -124506631 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 366 80 0 0 chr11 26276979 26277029 -124506524 + (TG)n Simple_repeat Simple_repeat 1 50 0 890 176 29 5 chr11 26277255 26277460 -124506093 - L1MA8 LINE L1 0 6291 6082 242 299 110 8 chr11 26277616 26277743 -124505810 - MIR SINE MIR -12 250 111 180 0 0 0 chr11 26278117 26278137 -124505416 + (TA)n Simple_repeat Simple_repeat 2 21 0 8967 108 19 4 chr11 26278153 26278490 -124505063 - HSMAR1 DNA Mariner 0 1287 957 2020 90 3 0 chr11 26278490 26278778 -124504775 - L1PA8 LINE L1 -3 6169 5881 8967 108 19 4 chr11 26278778 26279708 -124503845 - HSMAR1 DNA Mariner -330 957 1 195 233 0 0 chr11 26279997 26280040 -124503513 - MIR SINE MIR -145 117 75 1048 251 59 57 chr11 26280322 26280676 -124502877 - MSTB1 LTR MaLR 0 432 78 486 202 0 12 chr11 26281195 26281279 -124502274 - MSTB1 LTR MaLR -353 104 22 219 400 96 0 chr11 26281502 26281627 -124501926 - L2 LINE L2 -220 3052 2916 1558 198 3 33 chr11 26281996 26282325 -124501228 - L1MC1 LINE L1 -6 6327 6009 24 0 0 0 chr11 26283066 26283090 -124500463 + AT_rich Low_complexity Low_complexity 1 24 0 5299 84 17 4 chr11 26283090 26283839 -124499714 - L1PB1 LINE L1 -4 6147 5389 1458 129 102 104 chr11 26284260 26284624 -124498929 + THE1B LTR MaLR 2 364 0 487 92 0 0 chr11 26284624 26284689 -124498864 + THE1B-int LTR MaLR 1 65 -1515 1319 161 12 41 chr11 26284689 26284932 -124498621 + THE1B LTR MaLR 56 291 -73 3865 212 27 44 chr11 26285047 26286178 -124497375 + L1MD1 LINE L1 5122 6241 -1 442 229 145 8 chr11 26286209 26286340 -124497213 + MER45 DNA AcHobo 1428 1576 -5 351 78 0 0 chr11 26286562 26286613 -124496940 + (TC)n Simple_repeat Simple_repeat 2 52 0 384 309 25 25 chr11 26286915 26287077 -124496476 + MER5B DNA MER1_type 14 175 -3 2291 119 0 0 chr11 26287815 26288127 -124495426 + AluSx SINE Alu 1 312 0 257 318 159 45 chr11 26288585 26288761 -124494792 - MIR SINE MIR -38 224 29 208 314 41 50 chr11 26289755 26289876 -124493677 - MER5A DNA MER1_type -1 188 69 1654 134 4 12 chr11 26291621 26291874 -124491679 - AluSq SINE Alu -62 251 1 24 0 0 0 chr11 26292557 26292581 -124490972 + AT_rich Low_complexity Low_complexity 1 24 0 237 33 0 0 chr11 26292662 26292692 -124490861 + (GA)n Simple_repeat Simple_repeat 1 30 0 222 355 59 30 chr11 26292889 26293092 -124490461 - MIR SINE MIR -3 259 51 502 306 192 24 chr11 26294033 26294195 -124489358 + L2 LINE L2 2611 2744 -569 1829 133 0 0 chr11 26294195 26294466 -124489087 - AluSx SINE Alu -41 271 1 502 306 192 24 chr11 26294466 26294897 -124488656 + L2 LINE L2 2744 3313 0 284 292 24 101 chr11 26294979 26295147 -124488406 + MIR SINE MIR 52 206 -56 1150 157 15 10 chr11 26295737 26295941 -124487612 - L1PB4 LINE L1 -13 6143 5939 322 264 84 25 chr11 26295941 26296180 -124487373 - L1ME LINE L1 -293 5828 5576 266 354 155 41 chr11 26296311 26296704 -124486849 + L2 LINE L2 2876 3313 0 1619 111 201 7 chr11 26296745 26297034 -124486519 - MSTA LTR MaLR 0 428 84 1079 189 26 31 chr11 26297032 26297259 -124486294 + MLT1D LTR MaLR 280 505 0 * 296 279 81 18 chr11 26297533 26297644 -124485909 - MIR SINE MIR -114 148 31 1378 196 0 58 chr11 26298543 26298870 -124484683 + AluJo SINE Alu 1 308 -4 248 200 0 0 chr11 26300155 26300210 -124483343 + L1MC4 LINE L1 6648 6702 -1340 233 200 0 18 chr11 26300188 26300243 -124483310 - L1MC4 LINE L1 -1340 6702 6649 * 31 0 0 0 chr11 26300255 26300286 -124483267 + AT_rich Low_complexity Low_complexity 1 31 0 30 59 0 0 chr11 26300879 26300930 -124482623 + AT_rich Low_complexity Low_complexity 1 51 0 260 329 49 24 chr11 26301149 26301313 -124482240 + L1MC/D LINE L1 5589 5756 -2052 247 139 0 47 chr11 26301355 26301398 -124482155 + MIR SINE MIR 111 151 -111 220 359 29 19 chr11 26301820 26301923 -124481630 - MIR SINE MIR -147 115 12 511 343 130 36 chr11 26301934 26302565 -124480988 - L2 LINE L2 -124 3189 2485 3185 212 26 69 chr11 26303586 26304599 -124478954 + LTR5 LTR ERVK 1 969 0 268 216 118 10 chr11 26304608 26304710 -124478843 + LTR48B LTR ERV1 457 569 -75 2823 6 0 0 chr11 26305812 26306123 -124477430 + AluYa5 SINE Alu 1 311 0 544 130 20 10 chr11 26306987 26307087 -124476466 + L1PA10 LINE L1 6067 6167 -1 3395 184 9 8 chr11 26307744 26308390 -124475163 + L1MB3 LINE L1 5526 6172 -11 2383 42 42 0 chr11 26309036 26309325 -124474228 - AluY SINE Alu -10 301 1 1089 323 32 5 chr11 26309596 26309965 -124473588 - LTR33 LTR ERVL 0 521 143 614 350 64 50 chr11 26310794 26311297 -124472256 - LTR67 LTR ERVL -6 551 42 24 91 0 0 chr11 26311862 26311928 -124471625 + AT_rich Low_complexity Low_complexity 1 66 0 379 240 30 0 chr11 26312015 26312115 -124471438 - MER5A DNA MER1_type -77 112 10 376 231 0 0 chr11 26312176 26312267 -124471286 + MER103 DNA DNA 2 92 -74 181 342 51 0 chr11 26312710 26312789 -124470764 - L2 LINE L2 -6 3307 3225 736 261 65 26 chr11 26312870 26313176 -124470377 + L1M4 LINE L1 4591 4908 -1238 516 81 5 96 chr11 26313624 26313821 -124469732 + (TA)n Simple_repeat Simple_repeat 2 180 0 368 60 43 76 chr11 26313835 26314020 -124469533 + (TA)n Simple_repeat Simple_repeat 2 180 0 419 125 100 6 chr11 26314021 26314181 -124469372 + (CTATA)n Simple_repeat Simple_repeat 1 175 0 568 46 16 88 chr11 26314211 26314405 -124469148 + (TA)n Simple_repeat Simple_repeat 1 180 0 374 246 30 5 chr11 26315025 26315177 -124468376 - LTR37A LTR ERV1 -2 424 296 8906 213 51 8 chr11 26315196 26315544 -124468009 - L1PB1 LINE L1 -1 6866 6534 345 24 0 0 chr11 26315544 26315586 -124467967 + (TG)n Simple_repeat Simple_repeat 2 43 0 8906 213 51 8 chr11 26315586 26319765 -124463788 - L1PB1 LINE L1 -333 6534 2057 1811 194 36 14 chr11 26319765 26320121 -124463432 - THE1B LTR MaLR 0 364 1 10794 111 21 3 chr11 26320121 26321660 -124461893 - THE1B-int LTR MaLR 0 1580 15 1977 171 36 14 chr11 26321660 26322016 -124461537 - THE1B LTR MaLR 0 364 1 4652 151 12 8 chr11 26322016 26323486 -124460067 - L1PB1 LINE L1 -4802 2061 3 230 282 13 0 chr11 26323537 26323615 -124459938 - LTR37B LTR ERV1 -192 276 198 351 289 72 28 chr11 26324195 26324375 -124459178 + L2 LINE L2 2701 2888 -426 612 188 8 8 chr11 26324455 26324588 -124458965 - L1MB1 LINE L1 0 6168 6036 582 179 34 0 chr11 26324643 26324760 -124458793 + L1MA7 LINE L1 6160 6280 -11 3830 197 69 49 chr11 26324772 26325749 -124457804 - L1MA10 LINE L1 -40 6294 5297 183 42 0 0 chr11 26325749 26325773 -124457780 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 3830 197 69 49 chr11 26325773 26325842 -124457711 - L1MA10 LINE L1 -1037 5297 5231 289 356 9 0 chr11 26325847 26325962 -124457591 + MIR SINE MIR 110 225 -37 815 179 112 5 chr11 26325977 26326173 -124457380 + L1 LINE L1 3857 4073 -2073 320 359 71 5 chr11 26326178 26326362 -124457191 + L2 LINE L2 2919 3114 -199 623 255 36 88 chr11 26326445 26326696 -124456857 - MIR SINE MIR -22 240 3 7082 48 7 2 chr11 26326744 26327888 -124455665 + L1PA5 LINE L1 4999 6146 -8 28 61 0 0 chr11 26328552 26328601 -124454952 + AT_rich Low_complexity Low_complexity 1 49 0 234 188 0 0 chr11 26329965 26330013 -124453540 + (TA)n Simple_repeat Simple_repeat 2 49 0 226 312 0 11 chr11 26330013 26330106 -124453447 + CT-rich Low_complexity Low_complexity 1 92 0 180 0 0 0 chr11 26330620 26330640 -124452913 + (TG)n Simple_repeat Simple_repeat 1 20 0 7488 89 16 7 chr11 26331631 26333496 -124450057 - L1PA7 LINE L1 -2 6152 4277 1846 197 8 11 chr11 26333565 26333931 -124449622 - MLT1A1 LTR MaLR 0 365 1 795 176 0 0 chr11 26334924 26335055 -124448498 + LTR17 LTR ERV1 446 576 -204 367 288 114 68 chr11 26335472 26335691 -124447862 - LTR33 LTR ERVL -278 243 15 22 35 0 0 chr11 26337051 26337080 -124446473 + AT_rich Low_complexity Low_complexity 1 29 0 2384 194 51 74 chr11 26337795 26338593 -124444960 + LTR17 LTR ERV1 1 780 0 383 130 0 0 chr11 26338593 26338647 -124444906 + THE1B LTR MaLR 111 164 -200 1498 127 18 0 chr11 26338648 26338877 -124444676 - AluSg/x SINE Alu -5 307 75 756 307 91 20 chr11 26339146 26339599 -124443954 + L1M4 LINE L1 4591 5075 -1071 441 236 103 30 chr11 26339599 26339764 -124443789 - MLT1F1 LTR MaLR -5 562 386 253 365 146 0 chr11 26341677 26341869 -124441684 - MIR SINE MIR -10 252 33 314 320 94 39 chr11 26342194 26342397 -124441156 - L2 LINE L2 -768 2546 2333 191 293 128 23 chr11 26342397 26342530 -124441023 - L2 LINE L2 -1125 2189 2043 324 311 40 34 chr11 26342574 26342722 -124440831 - L2 LINE L2 -1268 2046 1898 3745 179 27 5 chr11 26344015 26344785 -124438768 - L1MA4 LINE L1 -1 6299 5513 281 56 0 0 chr11 26344791 26344827 -124438726 + MSTA LTR MaLR 1 36 -392 978 191 143 9 chr11 26344827 26345037 -124438516 + MSTA LTR MaLR 3 240 -188 4006 23 8 0 chr11 26345146 26345618 -124437935 + L1PA3 LINE L1 5676 6151 -4 185 32 0 65 chr11 26345622 26345653 -124437900 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 307 284 99 57 chr11 26345693 26345834 -124437719 - MIR3 SINE MIR -28 180 34 568 228 24 0 chr11 26346644 26346771 -124436782 + FRAM SINE Alu 16 145 -31 1658 178 101 32 chr11 26346771 26347286 -124436267 + MLT2A2 LTR ERVL 2 554 0 24 0 0 0 chr11 26348452 26348476 -124435077 + AT_rich Low_complexity Low_complexity 1 24 0 1738 40 22 0 chr11 26348477 26348704 -124434849 - L1PA4 LINE L1 -743 5403 5172 6431 30 0 0 chr11 26348704 26349461 -124434092 + L1PA4 LINE L1 5392 6152 -3 5459 186 18 31 chr11 26349592 26350781 -124432772 + L1P LINE L1 3180 4352 -1794 2581 102 17 59 chr11 26350781 26351241 -124432312 + HERVH LTR ERV1 1609 2049 -5664 33856 50 33 2 chr11 26351348 26355733 -124427820 - L1P LINE L1 -1623 4523 1 29 78 0 0 chr11 26355897 26355961 -124427592 + AT_rich Low_complexity Low_complexity 1 64 0 419 337 62 55 chr11 26356074 26356347 -124427206 - LTR33 LTR ERVL 0 521 247 959 280 55 9 chr11 26356459 26357035 -124426518 - L1 LINE L1 -3597 3968 3360 8725 247 22 13 chr11 26357168 26359702 -124423851 - L1 LINE L1 -1132 5014 2459 1853 301 15 18 chr11 26359965 26360788 -124422765 - L1P LINE L1 -3382 2764 1945 561 357 34 24 chr11 26360790 26361087 -124422466 + MLT1K LTR MaLR 103 402 -186 * 1427 240 100 57 chr11 26361065 26361836 -124421717 + MER63C DNA MER1_type 84 887 -43 24 32 0 0 chr11 26361908 26361939 -124421614 + AT_rich Low_complexity Low_complexity 1 31 0 194 294 33 33 chr11 26361984 26362076 -124421477 + MIR SINE MIR 101 192 -70 34 42 0 0 chr11 26363627 26363675 -124419878 + AT_rich Low_complexity Low_complexity 1 48 0 2296 247 55 37 chr11 26364970 26366307 -124417246 + L1M3a LINE L1 475 1814 -4221 757 181 97 18 chr11 26366318 26366561 -124416992 + MSTA LTR MaLR 3 274 -101 697 214 28 112 chr11 26366568 26366799 -124416754 + MLT2D LTR ERVL 28 232 -182 324 0 0 0 chr11 26366799 26366835 -124416718 + (TTG)n Simple_repeat Simple_repeat 2 37 0 697 214 28 112 chr11 26366835 26366888 -124416665 + MLT2D LTR ERVL 232 288 -126 607 296 86 44 chr11 26367502 26367887 -124415666 - MER57A LTR ERV1 0 403 3 457 335 90 0 chr11 26367935 26368135 -124415418 + MIR SINE MIR 35 252 -10 336 64 0 0 chr11 26368262 26368309 -124415244 + (CA)n Simple_repeat Simple_repeat 2 48 0 817 204 84 0 chr11 26368310 26368501 -124415052 - MER2 DNA MER2_type -1 344 138 23 0 0 0 chr11 26368501 26368524 -124415029 + AT_rich Low_complexity Low_complexity 1 23 0 3293 194 61 15 chr11 26369978 26370768 -124412785 - LTR1B LTR ERV1 0 826 1 3267 195 61 15 chr11 26371219 26372009 -124411544 - LTR1B LTR ERV1 0 826 1 923 190 63 15 chr11 26372044 26372249 -124411304 + L1MC3 LINE L1 7090 7304 -481 783 267 18 13 chr11 26372262 26372487 -124411066 - MLT2B1 LTR ERVL -285 235 10 1272 165 13 4 chr11 26372493 26372730 -124410823 + L1MC3 LINE L1 7479 7717 -68 403 243 14 74 chr11 26372731 26372927 -124410626 - MER3 DNA MER1_type -56 153 1 584 137 0 39 chr11 26373815 26373917 -124409636 + L1 LINE L1 4881 4978 -1168 558 156 21 0 chr11 26373919 26374015 -124409538 + L1PB4 LINE L1 6059 6156 0 257 352 0 11 chr11 26374221 26374312 -124409241 - L2 LINE L2 -19 3294 3205 27 62 0 0 chr11 26375495 26375543 -124408010 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr11 26375587 26375611 -124407942 + AT_rich Low_complexity Low_complexity 1 24 0 303 235 41 31 chr11 26375672 26375770 -124407783 - L1MC4 LINE L1 -1330 6712 6614 * 312 218 69 35 chr11 26375697 26375784 -124407769 + L1MC4 LINE L1 6614 6703 -1339 878 25 158 0 chr11 26376962 26377082 -124406471 + MER85 DNA T2_type 1 139 0 45 34 0 0 chr11 26377331 26377390 -124406163 + AT_rich Low_complexity Low_complexity 1 59 0 276 53 0 0 chr11 26378411 26378449 -124405104 + (TG)n Simple_repeat Simple_repeat 2 39 0 2242 190 26 2 chr11 26378473 26378895 -124404658 + MSTB1 LTR MaLR 1 432 0 304 299 130 7 chr11 26378897 26379051 -124404502 + MIR SINE MIR 53 225 -37 787 209 13 0 chr11 26379893 26380046 -124403507 + Tigger1 DNA MER2_type 1 155 -2263 * 971 201 0 0 chr11 26380035 26380214 -124403339 + Tigger1 DNA MER2_type 2240 2418 0 1589 215 111 13 chr11 26380215 26380610 -124402943 - MLT1C LTR MaLR -33 434 1 25 51 0 0 chr11 26380693 26380732 -124402821 + AT_rich Low_complexity Low_complexity 1 39 0 2018 92 46 3 chr11 26380764 26381048 -124402505 - AluY SINE Alu -15 296 1 22 0 0 0 chr11 26381207 26381229 -124402324 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr11 26381495 26381542 -124402011 + AT_rich Low_complexity Low_complexity 1 47 0 244 287 78 26 chr11 26381561 26381676 -124401877 - MIR SINE MIR -58 204 84 216 0 0 0 chr11 26381853 26381877 -124401676 + (CCCTAA)n Simple_repeat Simple_repeat 5 28 0 1615 184 75 22 chr11 26383035 26383355 -124400198 + MER1B DNA MER1_type 1 337 0 253 276 63 55 chr11 26384053 26384180 -124399373 - MIR SINE MIR -30 232 105 318 272 78 126 chr11 26384196 26384593 -124398960 - L1ME4a LINE L1 -243 5878 5501 1477 197 37 10 chr11 26385229 26385528 -124398025 + AluJb SINE Alu 5 311 -1 1541 149 10 14 chr11 26386423 26386711 -124396842 - AluSp SINE Alu -26 287 1 240 200 18 18 chr11 26386730 26386785 -124396768 + (TGG)n Simple_repeat Simple_repeat 2 56 0 1100 208 42 19 chr11 26386990 26387250 -124396303 + AluJb SINE Alu 46 311 -1 2138 89 10 10 chr11 26388129 26388432 -124395121 - AluSq SINE Alu -10 303 1 213 204 23 0 chr11 26388451 26388495 -124395058 + (TGG)n Simple_repeat Simple_repeat 2 46 0 324 318 83 0 chr11 26388601 26388733 -124394820 - MIR3 SINE MIR -30 178 36 2412 71 0 3 chr11 26389630 26389940 -124393613 - AluY SINE Alu -2 309 1 22 35 0 0 chr11 26389948 26389977 -124393576 + AT_rich Low_complexity Low_complexity 1 29 0 372 313 12 0 chr11 26390030 26390190 -124393363 + (TA)n Simple_repeat Simple_repeat 2 163 0 7800 42 5 3 chr11 26390335 26391522 -124392031 - L1P1 LINE L1 -563 5592 4403 1500 138 26 1 chr11 26391623 26392002 -124391551 - L1P5 LINE L1 -650 5501 5115 1549 124 102 102 chr11 26392041 26392405 -124391148 + THE1B LTR MaLR 1 364 0 487 92 0 0 chr11 26392405 26392470 -124391083 + THE1B-int LTR MaLR 1 65 -1515 1329 156 12 41 chr11 26392470 26392713 -124390840 + THE1B LTR MaLR 56 291 -73 2680 207 21 45 chr11 26392812 26393624 -124389929 + L1MD2 LINE L1 5099 5899 -460 337 343 48 0 chr11 26593770 26593916 -124189637 + MIR SINE MIR 110 262 0 1100 265 91 56 chr11 26593979 26594524 -124189029 + MLT1F1 LTR MaLR 1 565 -2 249 163 0 0 chr11 26594650 26594699 -124188854 + (CA)n Simple_repeat Simple_repeat 2 50 0 678 230 29 25 chr11 26594871 26595075 -124188478 + MER3 DNA MER1_type 5 209 0 4424 249 35 40 chr11 26595612 26598194 -124185359 - L1PA13 LINE L1 -3696 3101 2 271 240 29 48 chr11 26598581 26598685 -124184868 - L1ME4a LINE L1 -70 6051 5950 822 189 0 13 chr11 26598846 26599005 -124184548 - MER39 LTR ERV1 -17 690 534 195 184 0 0 chr11 26599010 26599048 -124184505 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 470 290 72 55 chr11 26599204 26599385 -124184168 + L1MEc LINE L1 1768 1958 -4438 1638 177 63 28 chr11 26599385 26599747 -124183806 - THE1C LTR MaLR 0 375 1 470 290 72 55 chr11 26599747 26599872 -124183681 + L1MEc LINE L1 1958 2079 -4317 203 278 14 0 chr11 26599876 26599948 -124183605 + A-rich Low_complexity Low_complexity 4 76 0 4908 110 9 1 chr11 26600491 26601803 -124181750 + L1PA10 LINE L1 4615 5932 -236 7046 256 9 10 chr11 26601915 26602909 -124180644 + L1P LINE L1 2508 3500 -2646 2108 101 40 0 chr11 26602909 26603206 -124180347 + AluY SINE Alu 1 309 -2 7046 256 9 10 chr11 26603206 26604179 -124179374 + L1P LINE L1 3500 4473 -1673 * 42947 49 3 2 chr11 26604178 26609960 -124173593 + L1PA4 LINE L1 3 5789 -366 1013 47 0 0 chr11 26609960 26610087 -124173466 + L1PA4 LINE L1 6020 6147 -8 2950 62 3 3 chr11 26610101 26610487 -124173066 + L1PA4 LINE L1 5770 6155 0 3289 226 6 6 chr11 26610487 26611278 -124172275 + L1P LINE L1 4461 5251 -895 940 147 45 0 chr11 26611380 26611567 -124171986 + L1PA10 LINE L1 5984 6177 0 189 74 0 0 chr11 26612572 26612599 -124170954 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1163 213 8 4 chr11 26612973 26613213 -124170340 + MLT1B LTR MaLR 1 241 -149 273 231 66 0 chr11 26615487 26615498 -124168055 - L1MA10 LINE L1 -3 6331 6321 423 242 59 26 chr11 26615498 26615651 -124167902 - L1ME2 LINE L1 -9 6155 5998 24 32 0 0 chr11 26615716 26615747 -124167806 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr11 26615832 26615857 -124167696 + AT_rich Low_complexity Low_complexity 1 25 0 357 188 154 0 chr11 26616063 26616180 -124167373 - L1 LINE L1 -840 5306 5172 3121 167 41 35 chr11 26616262 26616925 -124166628 - L1MA3 LINE L1 -21 6284 5618 * 3659 182 33 44 chr11 26616922 26618102 -124165451 + L1M2 LINE L1 4519 5689 -602 258 32 0 0 chr11 26618122 26618153 -124165400 + (CA)n Simple_repeat Simple_repeat 1 31 0 1708 243 60 19 chr11 26618161 26618643 -124164910 - L1 LINE L1 -1008 5138 4628 2506 56 3 3 chr11 26618643 26618949 -124164604 - AluY SINE Alu -5 306 1 1708 243 60 19 chr11 26618949 26619035 -124164518 - L1 LINE L1 -1518 4628 4547 488 192 96 8 chr11 26619093 26619218 -124164335 - L1MA3 LINE L1 -1463 4683 4548 2138 195 25 7 chr11 26619741 26620176 -124163377 + L1MA9 LINE L1 5556 5998 -314 1334 88 0 0 chr11 26621367 26621538 -124162015 + AluY SINE Alu 131 301 -10 389 274 47 28 chr11 26622607 26622713 -124160840 - MIR SINE MIR -62 146 39 35 0 0 0 chr11 26623227 26623262 -124160291 + AT_rich Low_complexity Low_complexity 1 35 0 593 231 75 9 chr11 26623537 26623881 -124159672 - L1ME1 LINE L1 -5 6579 6184 918 160 19 87 chr11 26623888 26624094 -124159459 - AluSg/x SINE Alu 0 312 121 1422 284 33 2 chr11 26624138 26624624 -124158929 - L1ME1 LINE L1 -389 6195 5695 222 279 16 0 chr11 26624625 26624686 -124158867 + (TG)n Simple_repeat Simple_repeat 1 62 0 14209 31 6 0 chr11 26625048 26627520 -124156033 + L1PA4 LINE L1 3673 6152 -3 817 269 48 6 chr11 26627531 26627843 -124155710 - L1ME1 LINE L1 -1249 5315 4991 2982 161 10 44 chr11 26627859 26628467 -124155086 - L1MC2 LINE L1 -1 6343 5754 1349 259 66 23 chr11 26628704 26629217 -124154336 - L1ME1 LINE L1 -1926 4638 4104 322 325 22 61 chr11 26629830 26630058 -124153495 - L1ME1 LINE L1 -5774 271 53 460 348 34 0 chr11 26630403 26630581 -124152972 + LTR33 LTR ERVL 1 184 -337 725 161 49 0 chr11 26630581 26630724 -124152829 + L1MA7 LINE L1 5959 6108 -183 22 0 0 0 chr11 26630799 26630821 -124152732 + AT_rich Low_complexity Low_complexity 1 22 0 319 294 33 0 chr11 26631093 26631185 -124152368 + L2 LINE L2 2530 2624 -690 191 374 32 52 chr11 26631212 26631367 -124152186 + L2 LINE L2 2783 2933 -380 241 335 81 40 chr11 26631405 26631653 -124151900 + L2 LINE L2 3016 3273 -40 24 67 0 0 chr11 26632632 26632677 -124150876 + AT_rich Low_complexity Low_complexity 1 45 0 2182 115 0 10 chr11 26632794 26633099 -124150454 - AluSx SINE Alu -10 302 1 411 337 24 12 chr11 26633099 26633268 -124150285 - MLT1H1 LTR MaLR -384 171 1 28226 108 9 8 chr11 26633714 26638909 -124144644 + L1PA7 LINE L1 957 6154 0 1499 219 62 21 chr11 26638940 26639360 -124144193 + L1MB7 LINE L1 5748 6184 0 387 244 17 52 chr11 26639768 26639883 -124143670 - MLT2B3 LTR ERVL -208 346 236 1160 211 13 4 chr11 26639945 26640173 -124143380 - MLT2B3 LTR ERVL -323 231 2 500 338 70 5 chr11 26642037 26642238 -124141315 + MIR SINE MIR 29 242 -20 182 191 21 0 chr11 26642544 26642591 -124140962 + GA-rich Low_complexity Low_complexity 2 49 0 198 0 0 0 chr11 26642731 26642753 -124140800 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 288 0 0 0 chr11 26643072 26643104 -124140449 + (TG)n Simple_repeat Simple_repeat 2 33 0 730 297 42 85 chr11 26643513 26643783 -124139770 - L2 LINE L2 -23 3290 3049 611 63 74 11 chr11 26643783 26643878 -124139675 + L1PA2 LINE L1 6054 6154 -1 730 297 42 85 chr11 26643878 26644142 -124139411 - L2 LINE L2 -264 3049 2775 304 328 71 94 chr11 26645269 26645791 -124137762 - L2 LINE L2 0 3313 2804 3572 172 20 20 chr11 26645859 26646437 -124137116 + L1MC1 LINE L1 5620 6200 -133 1702 195 33 12 chr11 26646437 26646771 -124136782 - MER2 DNA MER2_type -3 341 1 3572 172 20 20 chr11 26646771 26646903 -124136650 + L1MC1 LINE L1 6199 6330 -3 226 306 71 12 chr11 26647196 26647281 -124136272 - L2 LINE L2 -22 3250 3161 22 0 0 0 chr11 26648204 26648226 -124135327 + AT_rich Low_complexity Low_complexity 1 22 0 1919 164 50 73 chr11 26648265 26648760 -124134793 - L1MB8 LINE L1 -198 5980 5497 24 32 0 0 chr11 26648989 26649020 -124134533 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr11 26650401 26650429 -124133124 + AT_rich Low_complexity Low_complexity 1 28 0 3065 26 0 0 chr11 26651599 26651982 -124131571 + L1P2 LINE L1 5232 5615 -539 189 231 0 0 chr11 26652016 26652055 -124131498 + MER5A DNA MER1_type 151 189 0 587 374 89 31 chr11 26652058 26652697 -124130856 - L3 LINE CR1 -79 1498 823 1103 78 0 48 chr11 26653133 26653299 -124130254 - MLT2A1 LTR ERVL 0 444 287 638 218 47 80 chr11 26653319 26653497 -124130056 + MLT1E3 LTR MaLR 436 551 -4 231 196 0 0 chr11 26653765 26653811 -124129742 + GA-rich Low_complexity Low_complexity 1 46 0 193 287 35 69 chr11 26653838 26653925 -124129628 + MIR SINE MIR 61 144 -118 23 54 0 0 chr11 26655086 26655123 -124128430 + AT_rich Low_complexity Low_complexity 1 37 0 330 238 0 0 chr11 26655317 26655380 -124128173 - L1M2 LINE L1 -6785 64 2 2563 55 0 0 chr11 26655830 26656139 -124127414 - AluY SINE Alu -2 309 1 1769 165 10 0 chr11 26657068 26657365 -124126188 - AluJb SINE Alu -12 300 1 22 0 0 0 chr11 26657853 26657875 -124125678 + AT_rich Low_complexity Low_complexity 1 22 0 1392 129 33 0 chr11 26657879 26658119 -124125434 + L1MA1 LINE L1 6055 6302 0 1404 175 24 58 chr11 26658469 26658761 -124124792 - AluJo SINE Alu -18 294 13 243 0 0 0 chr11 26658929 26658956 -124124597 + (TC)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chr11 26658955 26658975 -124124578 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 247 358 80 25 chr11 26659066 26659267 -124124286 + MIR SINE MIR 1 212 -50 251 357 26 31 chr11 26659592 26659939 -124123614 + L2 LINE L2 2896 3313 0 27 29 0 0 chr11 26659972 26660006 -124123547 + AT_rich Low_complexity Low_complexity 1 34 0 429 339 21 42 chr11 26661220 26661503 -124122050 + L1MEc LINE L1 317 593 -5970 319 294 13 100 chr11 26661632 26661863 -124121690 + L1MEc LINE L1 1150 1360 -5024 1179 189 181 0 chr11 26663126 26663380 -124120173 + AluJo SINE Alu 1 300 -2 223 294 0 0 chr11 26663399 26663450 -124120103 - L2 LINE L2 -12 3260 3210 1712 189 39 13 chr11 26663604 26663991 -124119562 - L1MB3 LINE L1 0 6183 5787 798 237 33 63 chr11 26663991 26664041 -124119512 - MER74B LTR ERVL 0 622 572 2157 134 25 11 chr11 26664041 26664406 -124119147 - THE1C LTR MaLR -1 374 5 798 237 33 63 chr11 26664406 26664854 -124118699 - MER74B LTR ERVL -50 572 147 718 222 28 0 chr11 26664890 26665034 -124118519 - MER74A LTR ERVL -396 162 15 334 143 95 0 chr11 26665085 26665148 -124118405 - L1MB3 LINE L1 -391 5780 5712 452 228 70 13 chr11 26665609 26665767 -124117786 - L1MB4 LINE L1 -1 6179 6013 1990 117 0 7 chr11 26665826 26666138 -124117415 - AluSg SINE Alu 0 310 1 30 0 0 0 chr11 26667836 26667866 -124115687 + AT_rich Low_complexity Low_complexity 1 30 0 1428 231 9 0 chr11 26667949 26668274 -124115279 - L1 LINE L1 -1113 5033 4706 3210 202 55 25 chr11 26668306 26668697 -124114856 + L1MB1 LINE L1 5083 5461 -707 2161 182 36 5 chr11 26668697 26669110 -124114443 + MSTA LTR MaLR 1 426 -2 3210 202 55 25 chr11 26669110 26669710 -124113843 + L1MB1 LINE L1 5461 6113 -55 7400 199 31 20 chr11 26669711 26671662 -124111891 + L1MA4 LINE L1 3577 5540 -743 1355 99 0 0 chr11 26671680 26671852 -124111701 - AluSq SINE Alu -141 172 1 3597 165 28 30 chr11 26671854 26671932 -124111621 + L1MA4 LINE L1 5527 5604 -696 419 171 13 0 chr11 26671932 26672008 -124111545 + MADE1 DNA Mariner 4 80 0 3597 165 28 30 chr11 26672008 26672704 -124110849 + L1MA4 LINE L1 5604 6300 0 516 198 55 93 chr11 26672718 26672900 -124110653 + L1MA10 LINE L1 6115 6289 -45 1539 210 7 10 chr11 26672903 26673208 -124110345 - AluJb SINE Alu -8 304 1 315 0 0 0 chr11 26674435 26674470 -124109083 + (CA)n Simple_repeat Simple_repeat 1 35 0 4078 138 95 133 chr11 26674973 26676315 -124107238 + pTR5 LTR ERV1 743 2295 -143 8722 110 4 4 chr11 26677081 26678304 -124105249 + L1P3 LINE L1 63 1285 -5176 219 245 32 75 chr11 26679250 26679344 -124104209 - MIR SINE MIR -124 138 49 186 224 0 0 chr11 26679505 26679554 -124103999 + G-rich Low_complexity Low_complexity 4 52 0 1358 224 40 63 chr11 26679618 26680172 -124103381 + MER67C LTR ERV1 1 514 0 2698 216 5 26 chr11 26682033 26682599 -124100954 + MLT2B3 LTR ERVL 1 554 0 220 363 62 34 chr11 26683123 26683269 -124100284 - L2 LINE L2 -611 2703 2554 324 305 61 15 chr11 26683459 26683590 -124099963 + MIR SINE MIR 59 195 -67 274 373 31 52 chr11 26684442 26684543 -124099010 - MER91B DNA MER1_type 0 190 93 1615 183 0 27 chr11 26684543 26684844 -124098709 + AluJb SINE Alu 1 293 -19 274 373 31 52 chr11 26684844 26684935 -124098618 - MER91B DNA MER1_type -97 93 2 22 56 0 0 chr11 26685842 26685878 -124097675 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 26685977 26685998 -124097555 + AT_rich Low_complexity Low_complexity 1 21 0 453 147 0 0 chr11 26686148 26686223 -124097330 + MADE1 DNA Mariner 1 75 -5 23 0 0 0 chr11 26686223 26686246 -124097307 + AT_rich Low_complexity Low_complexity 1 23 0 490 264 108 65 chr11 26686274 26686342 -124097211 - MIR SINE MIR -21 241 177 1670 189 0 3 chr11 26686342 26686639 -124096914 + AluJb SINE Alu 1 296 -16 490 264 108 65 chr11 26686639 26686801 -124096752 - MIR SINE MIR -85 177 1 468 287 6 55 chr11 26688869 26689033 -124094520 - MIR SINE MIR 0 262 107 187 324 49 39 chr11 26690235 26690337 -124093216 - MIR SINE MIR -69 139 37 2195 62 0 21 chr11 26690636 26690976 -124092577 + AluY SINE Alu 1 334 0 1289 78 73 5 chr11 26691079 26691270 -124092283 - L1PB1 LINE L1 0 6151 5948 250 241 46 11 chr11 26691270 26691357 -124092196 - L1ME LINE L1 -521 5600 5511 8887 32 11 0 chr11 26691375 26693198 -124090355 - L1PA4 LINE L1 -13 6142 4293 265 388 32 11 chr11 26693202 26693390 -124090163 + L2 LINE L2 2696 2887 -427 288 355 0 0 chr11 26693604 26693697 -124089856 + L1PA15-16 LINE L1 1471 1563 -5286 297 315 0 0 chr11 26693697 26693789 -124089764 + L1PA15-16 LINE L1 1472 1563 -5286 * 3245 248 34 32 chr11 26693776 26694931 -124088622 + L1PBb LINE L1 691 1936 -4267 1694 128 201 26 chr11 26694931 26695275 -124088278 - MER4A LTR ERV1 0 664 261 620 113 21 10 chr11 26695275 26695372 -124088181 - MER4A LTR ERV1 -566 98 1 7821 241 15 24 chr11 26695372 26697878 -124085675 + L1PBb LINE L1 1933 4415 -1788 21 36 0 0 chr11 26697945 26697973 -124085580 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 26699698 26699722 -124083831 + AT_rich Low_complexity Low_complexity 1 24 0 2006 239 58 5 chr11 26703470 26704109 -124079444 - MER45R DNA AcHobo -1 1580 908 3849 81 4 13 chr11 26704112 26704654 -124078899 - L1PA8 LINE L1 -6 6166 5630 1032 156 0 0 chr11 26704654 26704834 -124078719 + (TA)n Simple_repeat Simple_repeat 1 180 0 249 197 0 0 chr11 26704876 26704952 -124078601 + (CA)n Simple_repeat Simple_repeat 2 77 0 207 0 0 0 chr11 26705280 26705303 -124078250 + (TA)n Simple_repeat Simple_repeat 1 23 0 782 328 3 24 chr11 26706209 26706496 -124077057 + LTR16A LTR ERVL 170 450 0 223 381 0 12 chr11 26706620 26706704 -124076849 - L2 LINE L2 -10 3262 3180 333 303 56 35 chr11 26707002 26707200 -124076353 - MLT1J LTR MaLR -23 488 287 318 368 96 6 chr11 26707452 26707797 -124075756 - L2 LINE L2 -1241 2073 1698 1852 187 39 0 chr11 26707991 26708355 -124075198 + L1MB1 LINE L1 5791 6168 0 287 350 51 13 chr11 26708680 26708837 -124074716 + MIR SINE MIR 66 228 -34 504 253 20 35 chr11 26710238 26710416 -124073137 + L1MB7 LINE L1 3825 4001 -2145 2136 144 14 27 chr11 26710416 26710785 -124072768 - THE1B LTR MaLR 0 364 1 504 253 20 35 chr11 26710785 26710808 -124072745 + L1MB7 LINE L1 4001 4023 -2123 501 224 0 0 chr11 26710812 26710924 -124072629 + L1PA16 LINE L1 6042 6153 -3 2592 239 28 42 chr11 26710927 26711001 -124072552 + L1MB7 LINE L1 5367 5441 -743 2283 107 7 0 chr11 26711001 26711309 -124072244 + AluSp SINE Alu 1 310 -3 2592 239 28 42 chr11 26711309 26712058 -124071495 + L1MB7 LINE L1 5441 6178 -6 1221 182 112 0 chr11 26712769 26713027 -124070526 - Tigger3(Golem) DNA MER2_type 0 3029 2743 1033 176 21 0 chr11 26713027 26713214 -124070339 + AluSg/x SINE Alu 121 311 -1 2724 128 51 8 chr11 26713219 26713324 -124070229 - Tigger3(Golem) DNA MER2_type -289 2740 2641 1466 198 30 17 chr11 26713324 26713622 -124069931 - AluJo SINE Alu -10 302 1 2724 128 51 8 chr11 26713622 26714010 -124069543 - Tigger3(Golem) DNA MER2_type -388 2641 2226 312 257 25 116 chr11 26714015 26714299 -124069254 + L1MC5 LINE L1 7381 7638 -323 347 260 101 48 chr11 26714423 26714631 -124068922 - L1MC4a LINE L1 -1919 5889 5671 321 287 43 0 chr11 26714662 26714756 -124068797 - MIR SINE MIR -67 141 44 183 42 0 0 chr11 26715225 26715249 -124068304 + (TTGG)n Simple_repeat Simple_repeat 1 24 0 1424 146 45 0 chr11 26715750 26715996 -124067557 - L1PA15 LINE L1 -2 6163 5907 2028 174 82 32 chr11 26716169 26716630 -124066923 - LTR2B LTR ERV1 0 490 7 23 0 0 0 chr11 26717168 26717191 -124066362 + AT_rich Low_complexity Low_complexity 1 23 0 230 242 76 30 chr11 26717708 26717774 -124065779 - L2 LINE L2 -31 3241 3173 301 362 0 29 chr11 26718607 26718712 -124064841 + L2 LINE L2 2898 2999 -314 1481 114 117 24 chr11 26718973 26719263 -124064290 - THE1C LTR MaLR -58 317 1 232 316 116 11 chr11 26719438 26719533 -124064020 + MIR SINE MIR 17 121 -87 211 353 20 7 chr11 26720972 26721125 -124062428 + (TA)n Simple_repeat Simple_repeat 1 155 0 314 233 33 33 chr11 26721260 26721350 -124062203 + MIR SINE MIR 116 205 -57 35 41 0 0 chr11 26721363 26721412 -124062141 + AT_rich Low_complexity Low_complexity 1 49 0 8553 251 39 38 chr11 26721841 26726382 -124057171 + L1PA12 LINE L1 1341 5376 -2208 422 268 23 50 chr11 26726383 26726597 -124056956 + LTR1 LTR ERV1 1 355 -600 189 171 0 0 chr11 26727311 26727346 -124056207 + CT-rich Low_complexity Low_complexity 3 37 0 890 243 78 16 chr11 26727540 26727783 -124055770 - MLT1E1 LTR MaLR -23 631 374 717 231 108 10 chr11 26727797 26727992 -124055561 - MLT1E1 LTR MaLR -382 272 59 23 33 0 0 chr11 26729184 26729214 -124054339 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr11 26729605 26729630 -124053923 + AT_rich Low_complexity Low_complexity 1 25 0 1044 357 44 15 chr11 26729771 26730297 -124053256 - MLT2E LTR ERVL -41 587 47 24 32 0 0 chr11 26730489 26730520 -124053033 + AT_rich Low_complexity Low_complexity 1 31 0 453 325 80 10 chr11 26730871 26731071 -124052482 + MIR SINE MIR 48 261 -1 470 91 13 0 chr11 26731094 26731171 -124052382 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 1636 123 4 0 chr11 26732909 26733160 -124050393 + L1P LINE L1 3809 4060 -2086 1883 159 0 116 chr11 26733511 26733864 -124049689 + Charlie3 DNA MER1_type 1 2685 -25 2321 263 26 60 chr11 26733878 26735227 -124048326 - L1M2 LINE L1 -4449 2759 1527 819 352 65 23 chr11 26736193 26736761 -124046792 - L1M2 LINE L1 -6566 643 52 304 245 51 20 chr11 26736848 26736946 -124046607 - L2 LINE L2 -369 2945 2845 321 307 123 6 chr11 26738513 26738676 -124044877 - LTR16A LTR ERVL -262 188 7 1255 255 48 82 chr11 26739687 26739729 -124043824 - MLT2B1 LTR ERVL 0 520 478 378 0 0 0 chr11 26739729 26739771 -124043782 + (TG)n Simple_repeat Simple_repeat 2 43 0 1255 255 48 82 chr11 26739771 26740266 -124043287 - MLT2B1 LTR ERVL -42 478 1 2094 112 0 26 chr11 26740429 26740742 -124042811 + AluSc SINE Alu 1 305 -4 216 182 0 0 chr11 26740766 26740810 -124042743 + (TA)n Simple_repeat Simple_repeat 1 44 0 2002 135 26 52 chr11 26741997 26742382 -124041171 + THE1C LTR MaLR 1 375 0 2083 148 54 36 chr11 26742698 26743229 -124040324 - MLT2A2 LTR ERVL 0 554 1 1278 86 0 0 chr11 26743580 26743742 -124039811 + AluY SINE Alu 137 298 -13 320 276 86 43 chr11 26743958 26744074 -124039479 - L2 LINE L2 -9 3263 3143 711 160 88 0 chr11 26744176 26744301 -124039252 + AluJb SINE Alu 1 136 -176 2590 55 0 0 chr11 26744301 26744609 -124038944 + AluY SINE Alu 1 308 -3 317 303 99 18 chr11 26744732 26744953 -124038600 - L1ME LINE L1 -616 5505 5267 260 115 173 0 chr11 26745175 26745227 -124038326 + HsTC2 DNA Tc2 3 63 -1835 756 224 84 49 chr11 26745345 26745730 -124037823 + MLT1J2 LTR MaLR 31 445 -1 1046 161 0 0 chr11 26746026 26746181 -124037372 - AluSg/x SINE Alu -23 289 135 273 119 0 0 chr11 26746181 26746223 -124037330 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1800 157 68 106 chr11 26746340 26746431 -124037122 - LTR8 LTR ERV1 -167 524 431 2169 129 3 0 chr11 26746431 26746734 -124036819 - AluSx SINE Alu -5 307 4 1800 157 68 106 chr11 26746734 26747171 -124036382 - LTR8 LTR ERV1 -260 431 16 2419 65 7 0 chr11 26747179 26747471 -124036082 - AluSq SINE Alu -19 294 1 506 314 43 0 chr11 26747476 26747661 -124035892 + L2 LINE L2 2550 2742 -572 212 395 23 0 chr11 26747830 26747916 -124035637 - MER91B DNA MER1_type -1 189 102 276 30 0 0 chr11 26747917 26747950 -124035603 + (CA)n Simple_repeat Simple_repeat 2 34 0 1498 200 18 146 chr11 26748888 26749389 -124034164 - MER70A LTR ERVL 0 472 36 184 331 101 50 chr11 26749491 26749581 -124033972 - MIR SINE MIR -72 190 89 2389 151 0 3 chr11 26749581 26749945 -124033608 - THE1B LTR MaLR -1 363 1 184 331 101 50 chr11 26749945 26749993 -124033560 - MIR SINE MIR -173 89 45 21 36 0 0 chr11 26749993 26750021 -124033532 + AT_rich Low_complexity Low_complexity 1 28 0 278 393 52 6 chr11 26750089 26750262 -124033291 + L2 LINE L2 2559 2739 -575 282 73 0 0 chr11 26750462 26750503 -124033050 + (TG)n Simple_repeat Simple_repeat 2 42 0 247 113 0 48 chr11 26750704 26750766 -124032787 - LTR66 LTR ERVL -154 456 398 214 205 0 0 chr11 26750767 26750806 -124032747 + (TA)n Simple_repeat Simple_repeat 1 39 0 257 250 24 0 chr11 26750807 26750891 -124032662 - L1MC4 LINE L1 -1340 6702 6617 236 258 0 22 chr11 26750898 26750987 -124032566 - L1MC4 LINE L1 -1339 6703 6617 * 241 267 23 0 chr11 26750944 26751030 -124032523 + L1MC4 LINE L1 6614 6701 -1341 268 276 23 0 chr11 26751032 26751119 -124032434 - L1MC4 LINE L1 -1339 6703 6615 261 210 0 0 chr11 26751120 26751182 -124032371 + (TA)n Simple_repeat Simple_repeat 2 63 0 230 245 0 43 chr11 26751182 26751276 -124032277 - L1MC4 LINE L1 -1339 6703 6614 393 133 67 0 chr11 26751277 26751367 -124032186 + (CATATA)n Simple_repeat Simple_repeat 5 100 0 249 270 0 0 chr11 26751373 26751462 -124032091 - L1MC4 LINE L1 -1339 6703 6615 327 104 0 0 chr11 26751465 26751513 -124032040 + (CATATA)n Simple_repeat Simple_repeat 2 49 0 226 282 24 0 chr11 26751516 26751601 -124031952 + L1MC4 LINE L1 6617 6703 -1339 * 252 244 23 0 chr11 26751573 26751659 -124031894 - L1MC4 LINE L1 -1339 6703 6616 208 256 0 0 chr11 26751661 26751704 -124031849 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 2211 118 0 0 chr11 26752840 26753145 -124030408 + AluSc SINE Alu 1 305 -4 1994 124 20 7 chr11 26753636 26753935 -124029618 - AluSq SINE Alu -6 307 5 288 0 0 0 chr11 26754080 26754112 -124029441 + (CA)n Simple_repeat Simple_repeat 2 33 0 227 264 69 0 chr11 26754319 26754391 -124029162 + MIR SINE MIR 53 129 -79 350 205 51 0 chr11 26756159 26756237 -124027316 + MER103 DNA DNA 70 151 -15 2256 64 10 17 chr11 26756648 26756944 -124026609 + AluY SINE Alu 1 294 -17 4470 50 7 0 chr11 26757184 26757746 -124025807 + L1PA4 LINE L1 5590 6155 0 271 140 18 18 chr11 26757814 26757871 -124025682 - L1MB2 LINE L1 -7 6164 6108 2199 109 3 3 chr11 26758001 26758305 -124025248 + AluSq SINE Alu 1 304 -9 4613 164 11 19 chr11 26758321 26759220 -124024333 + L1MB3 LINE L1 5285 6176 -7 23 0 0 0 chr11 26759638 26759661 -124023892 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 26759719 26759740 -124023813 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 26761042 26761070 -124022483 + AT_rich Low_complexity Low_complexity 1 28 0 1339 166 21 21 chr11 26761562 26761845 -124021708 - L1MA4A LINE L1 -10 6293 6011 1929 137 14 49 chr11 26761845 26762211 -124021342 + L1MA4A LINE L1 5652 6004 -299 381 258 8 76 chr11 26763972 26764104 -124019449 + MER5A DNA MER1_type 67 189 0 6137 33 0 0 chr11 26764621 26765346 -124018207 - L1PA4 LINE L1 -3 6152 5428 6204 39 7 1 chr11 26765346 26766158 -124017395 + L1PA4 LINE L1 4617 5432 -723 213 39 0 0 chr11 26766557 26766583 -124016970 + (A)n Simple_repeat Simple_repeat 1 26 0 2010 151 0 19 chr11 26766602 26766914 -124016639 + AluSx SINE Alu 1 306 -6 22 35 0 0 chr11 26767023 26767052 -124016501 + AT_rich Low_complexity Low_complexity 1 29 0 209 330 134 0 chr11 26767064 26767176 -124016377 - MIR SINE MIR -132 130 4 22 35 0 0 chr11 26768790 26768819 -124014734 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr11 26768873 26768908 -124014645 + AT_rich Low_complexity Low_complexity 1 35 0 2273 133 10 31 chr11 26768936 26769319 -124014234 + THE1C LTR MaLR 1 375 0 35 0 0 0 chr11 26769320 26769355 -124014198 + AT_rich Low_complexity Low_complexity 1 35 0 260 398 16 0 chr11 26769685 26769813 -124013740 + MIR3 SINE MIR 74 203 -5 2254 179 33 12 chr11 26771231 26771650 -124011903 + MSTA LTR MaLR 1 428 0 2949 181 48 0 chr11 26771650 26772192 -124011361 + MSTA-int LTR MaLR 1 568 -1083 * 5111 172 44 0 chr11 26772190 26773073 -124010480 + MSTA-int LTR MaLR 728 1649 -2 2318 137 72 5 chr11 26773075 26773476 -124010077 + MSTA LTR MaLR 1 428 0 233 250 36 18 chr11 26775169 26775225 -124008328 - MIR SINE MIR -200 62 6 296 302 216 7 chr11 26775751 26775890 -124007663 + MIR SINE MIR 30 197 -65 540 306 12 12 chr11 26775901 26776074 -124007479 - MER5B DNA MER1_type -5 173 1 715 284 53 9 chr11 26776760 26777081 -124006472 + L1ME1 LINE L1 2432 2766 -3380 798 269 34 57 chr11 26777118 26777319 -124006234 + L1ME1 LINE L1 2860 3064 -3082 1468 234 0 0 chr11 26777319 26777628 -124005925 + AluJo SINE Alu 1 309 0 798 269 34 57 chr11 26777628 26777870 -124005683 + L1ME1 LINE L1 3064 3293 -2853 2385 71 3 7 chr11 26777870 26778179 -124005374 + AluY SINE Alu 1 308 -3 798 269 34 57 chr11 26778179 26778239 -124005314 + L1ME1 LINE L1 3293 3353 -2793 367 240 81 47 chr11 26778313 26778571 -124004982 + L1ME1 LINE L1 4288 4554 -1592 1500 218 63 24 chr11 26778572 26778953 -124004600 - MSTD LTR MaLR 0 396 1 5323 265 71 25 chr11 26778971 26780598 -124002955 - MSTD-int LTR MaLR -19 1716 16 441 0 0 0 chr11 26780612 26780661 -124002892 + (TG)n Simple_repeat Simple_repeat 2 50 0 1310 228 111 8 chr11 26780661 26781006 -124002547 - MSTD LTR MaLR -15 381 1 427 267 64 11 chr11 26781065 26781252 -124002301 + L1ME1 LINE L1 4617 4813 -1333 41297 62 5 0 chr11 26781329 26787452 -123996101 + L1PA5 LINE L1 5 6148 -6 871 272 35 91 chr11 26787448 26787988 -123995565 + L1ME1 LINE L1 5548 6057 -109 * 1234 190 36 4 chr11 26787993 26788240 -123995313 - L1MC3 LINE L1 -373 7412 7158 709 230 35 6 chr11 26788272 26788446 -123995107 - L1MD3 LINE L1 -1112 6883 6705 1470 182 64 42 chr11 26788859 26789189 -123994364 - MER1B DNA MER1_type 0 337 1 316 223 97 29 chr11 26790087 26790190 -123993363 - MIR SINE MIR -39 223 114 1477 252 84 79 chr11 26791645 26792229 -123991324 - MLT1E LTR MaLR -4 589 3 235 363 57 8 chr11 26792251 26792375 -123991178 - MIR3 SINE MIR -52 156 27 855 253 10 5 chr11 26792390 26792588 -123990965 - MER58A DNA MER1_type -15 209 11 259 302 68 5 chr11 26792872 26792979 -123990574 - MIR SINE MIR -67 141 36 613 315 98 25 chr11 26793096 26793455 -123990098 - L2 LINE L2 -1937 1377 993 338 271 36 71 chr11 26793470 26793610 -123989943 + MIR SINE MIR 63 197 -65 966 219 8 36 chr11 26794060 26794136 -123989417 + MLT1D LTR MaLR 6 83 -422 2477 111 19 6 chr11 26794136 26794495 -123989058 + THE1B LTR MaLR 1 364 0 966 219 8 36 chr11 26794495 26794665 -123988888 + MLT1D LTR MaLR 83 245 -260 894 233 68 5 chr11 26794667 26794873 -123988680 + MLT1D LTR MaLR 280 498 -7 2005 114 40 10 chr11 26795491 26795790 -123987763 - AluSg SINE Alu -2 308 1 438 320 70 13 chr11 26796285 26796513 -123987040 - MIR SINE MIR -9 253 13 621 290 101 31 chr11 26797266 26797583 -123985970 - L2 LINE L2 -2 3311 2973 696 223 131 0 chr11 26797633 26797808 -123985745 - MER3 DNA MER1_type -5 204 7 1034 324 44 33 chr11 26797816 26798335 -123985218 - L2 LINE L2 -407 2907 2383 206 365 14 0 chr11 26798383 26798457 -123985096 - L2 LINE L2 -945 2369 2295 4331 252 87 36 chr11 26798463 26801328 -123982225 + L1M3c LINE L1 4 2678 -3532 286 236 14 0 chr11 26801730 26801802 -123981751 - MLT1A1 LTR MaLR -2 363 291 325 333 70 8 chr11 26802576 26802715 -123980838 + MIR SINE MIR 28 173 -66 23 35 6 0 chr11 26804667 26804739 -123978814 + AT_rich Low_complexity Low_complexity 1 37 0 243 103 0 0 chr11 26804822 26804861 -123978692 + (TG)n Simple_repeat Simple_repeat 1 39 0 238 284 67 37 chr11 26804982 26805116 -123978437 + L1MEc LINE L1 215 352 -6044 318 301 97 47 chr11 26805201 26805729 -123977824 + L1MEc LINE L1 499 1052 -5344 997 203 4 35 chr11 26805730 26805962 -123977591 + AluJb SINE Alu 85 309 -3 292 240 25 16 chr11 26805966 26806087 -123977466 + L1MEc LINE L1 1005 1126 -5079 803 206 57 6 chr11 26806088 26806285 -123977268 + MSTC LTR MaLR 219 396 0 1837 132 10 26 chr11 26806352 26806656 -123976897 + AluSx SINE Alu 1 299 -13 663 284 21 58 chr11 26807571 26807787 -123975766 - L1ME LINE L1 -549 5615 5418 1828 149 22 0 chr11 26807787 26807971 -123975582 - AluSx SINE Alu 0 320 126 234 0 0 0 chr11 26807971 26807997 -123975556 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1828 149 22 0 chr11 26807997 26808126 -123975427 - AluSx SINE Alu -194 126 1 663 284 21 58 chr11 26808126 26808361 -123975192 - L1ME LINE L1 -746 5418 5176 2313 271 49 14 chr11 26808685 26809339 -123974214 - MER76 LTR ERV 0 688 12 27 0 0 0 chr11 26809403 26809430 -123974123 + AT_rich Low_complexity Low_complexity 1 27 0 300 282 160 26 chr11 26809489 26809645 -123973908 + MIR SINE MIR 86 262 0 215 365 71 8 chr11 26809967 26810093 -123973460 + MIR SINE MIR 19 152 -110 1884 159 0 7 chr11 26810132 26810434 -123973119 + AluJo SINE Alu 1 300 -12 3878 186 37 6 chr11 26810633 26811416 -123972137 - L1MA10 LINE L1 0 6334 5528 780 253 0 0 chr11 26811418 26811592 -123971961 + L1 LINE L1 3990 4163 -1983 314 295 134 0 chr11 26811712 26811824 -123971729 + MER45A DNA AcHobo 28 154 -24 324 248 86 8 chr11 26813432 26813549 -123970004 + MER113 DNA MER1_type? 2 127 -394 609 345 32 21 chr11 26814509 26815002 -123968551 + LTR33 LTR ERVL 1 520 -1 25 0 0 0 chr11 26815018 26815043 -123968510 + AT_rich Low_complexity Low_complexity 1 25 0 355 383 81 10 chr11 26815927 26816225 -123967328 + HERVL LTR ERVL 4680 4998 -656 524 341 91 38 chr11 26816642 26817122 -123966431 + L2 LINE L2 2777 3286 -27 229 268 79 47 chr11 26817174 26817301 -123966252 + MIR SINE MIR 73 203 -59 200 267 86 29 chr11 26817922 26818027 -123965526 - MIR SINE MIR -13 249 139 432 0 0 0 chr11 26818554 26818602 -123964951 + (TG)n Simple_repeat Simple_repeat 2 49 0 381 98 0 0 chr11 26818602 26818653 -123964900 - AluSp/q SINE Alu -24 279 229 605 257 50 54 chr11 26818945 26819206 -123964347 + MIR SINE MIR 2 261 -1 23 54 0 0 chr11 26820398 26820435 -123963118 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr11 26820513 26820543 -123963010 + AT_rich Low_complexity Low_complexity 1 30 0 1590 204 0 0 chr11 26820568 26820853 -123962700 + AluJo SINE Alu 1 285 -27 5574 141 62 3 chr11 26820859 26822658 -123960895 - L1PA13 LINE L1 -107 6056 4140 21 71 0 0 chr11 26822780 26822822 -123960731 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr11 26823139 26823167 -123960386 + AT_rich Low_complexity Low_complexity 1 28 0 36 94 0 0 chr11 26823277 26823383 -123960170 + AT_rich Low_complexity Low_complexity 1 106 0 181 374 22 43 chr11 26823623 26823762 -123959791 - L2 LINE L2 -177 3095 2960 424 281 39 0 chr11 26823941 26824069 -123959484 - MIR SINE MIR -44 218 86 193 333 98 16 chr11 26825090 26825213 -123958340 + L2 LINE L2 2917 3049 -223 2540 70 0 0 chr11 26825306 26825634 -123957919 - L1P4 LINE L1 -393 5775 5448 294 325 74 30 chr11 26826103 26826306 -123957247 + MIR SINE MIR 1 212 -50 2031 244 47 15 chr11 26826505 26827033 -123956520 + MER74B LTR ERVL 1 545 -77 329 0 24 0 chr11 26827102 26827143 -123956410 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7115 38 25 0 chr11 26827143 26828664 -123954889 - L1PA5 LINE L1 -13 6141 4597 6825 48 106 125 chr11 26828664 26829318 -123954235 + L1P LINE L1 3400 4176 -1970 1149 79 0 0 chr11 26829318 26829470 -123954083 + MER11B LTR ERVK 1085 1236 0 6825 48 106 125 chr11 26829470 26829891 -123953662 + L1P LINE L1 4176 4603 -1543 207 194 32 16 chr11 26830283 26830345 -123953208 + (TA)n Simple_repeat Simple_repeat 1 63 0 1777 208 45 3 chr11 26831334 26831714 -123951839 + MSTD LTR MaLR 1 396 0 195 162 0 0 chr11 26832396 26832433 -123951120 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 914 19 0 0 chr11 26833231 26833338 -123950215 - L1PA4 LINE L1 -3 6152 6046 199 297 161 19 chr11 26833376 26833531 -123950022 + MIR SINE MIR 86 262 0 25 0 0 0 chr11 26833604 26833629 -123949924 + AT_rich Low_complexity Low_complexity 1 25 0 5056 150 2 28 chr11 26834346 26835255 -123948298 + L1PA14 LINE L1 5276 6161 0 2338 102 3 0 chr11 26836593 26836898 -123946655 - AluSx SINE Alu -6 306 1 1148 110 12 0 chr11 26837622 26837786 -123945767 - AluSg/x SINE Alu 0 312 147 2097 165 3 31 chr11 26838330 26838711 -123944842 + MLT1B LTR MaLR 1 370 -20 444 289 97 27 chr11 26841521 26841754 -123941799 - HAL1 LINE L1 -114 2393 2133 2126 126 0 13 chr11 26841754 26842063 -123941490 - AluSx SINE Alu -7 305 1 444 289 97 27 chr11 26842063 26842127 -123941426 - HAL1 LINE L1 -374 2133 2075 30 0 0 0 chr11 26842309 26842339 -123941214 + AT_rich Low_complexity Low_complexity 1 30 0 512 324 99 12 chr11 26842357 26842681 -123940872 - HAL1 LINE L1 -849 1658 1307 22 35 0 0 chr11 26843677 26843706 -123939847 + AT_rich Low_complexity Low_complexity 1 29 0 991 192 0 0 chr11 26843820 26843997 -123939556 - MLT1B LTR MaLR -51 339 163 23 0 0 0 chr11 26844008 26844031 -123939522 + AT_rich Low_complexity Low_complexity 1 23 0 1048 137 0 0 chr11 26844031 26844184 -123939369 - AluSq SINE Alu -27 286 134 2168 86 10 7 chr11 26844184 26844474 -123939079 - AluY SINE Alu -16 295 5 5151 159 40 24 chr11 26844489 26845487 -123938066 - L1MA8 LINE L1 -1 6290 5277 255 248 0 105 chr11 26845848 26845953 -123937600 + L1MC4 LINE L1 6600 6693 -1349 192 40 0 0 chr11 26846417 26846442 -123937111 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 542 248 24 0 chr11 26848076 26848201 -123935352 + MER70A LTR ERVL 345 472 0 311 326 91 15 chr11 26848469 26848601 -123934952 + MIR SINE MIR 60 201 -61 210 395 23 0 chr11 26848622 26848708 -123934845 - MER91B DNA MER1_type -1 189 102 276 30 0 0 chr11 26848709 26848742 -123934811 + (CA)n Simple_repeat Simple_repeat 2 34 0 1481 200 18 146 chr11 26849680 26850181 -123933372 - MER70A LTR ERVL 0 472 36 192 331 101 50 chr11 26850283 26850373 -123933180 - MIR SINE MIR -72 190 89 2373 151 0 3 chr11 26850373 26850737 -123932816 - THE1B LTR MaLR -1 363 1 192 331 101 50 chr11 26850737 26850785 -123932768 - MIR SINE MIR -173 89 45 21 36 0 0 chr11 26850785 26850813 -123932740 + AT_rich Low_complexity Low_complexity 1 28 0 281 393 52 6 chr11 26850881 26851054 -123932499 + L2 LINE L2 2559 2739 -575 282 73 0 0 chr11 26851254 26851295 -123932258 + (TG)n Simple_repeat Simple_repeat 2 42 0 256 113 0 48 chr11 26851496 26851558 -123931995 - LTR66 LTR ERVL -154 456 398 332 232 10 0 chr11 26851559 26851658 -123931895 + (TA)n Simple_repeat Simple_repeat 1 100 0 289 261 0 0 chr11 26851660 26851748 -123931805 - L1MC4 LINE L1 -1340 6702 6615 227 272 0 22 chr11 26851681 26851773 -123931780 + L1MC4 LINE L1 6614 6703 -1339 * 229 315 0 0 chr11 26851763 26851852 -123931701 - L1MC4 LINE L1 -1339 6703 6615 * 247 287 23 0 chr11 26851800 26851887 -123931666 + L1MC4 LINE L1 6615 6703 -1339 * 265 244 23 0 chr11 26851859 26851945 -123931608 - L1MC4 LINE L1 -1339 6703 6616 208 256 0 0 chr11 26851947 26851990 -123931563 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 1437 176 21 58 chr11 26852441 26852771 -123930782 - L1MB1 LINE L1 -7 6161 5844 1192 216 109 41 chr11 26852778 26853116 -123930437 + MLT1A1 LTR MaLR 1 361 -4 1104 194 54 4 chr11 26853120 26853362 -123930191 + MLT1A1-int LTR MaLR 1 254 -1481 7915 176 31 24 chr11 26853542 26854534 -123929019 - L1P LINE L1 -1992 4154 3144 441 0 0 0 chr11 26854534 26854583 -123928970 + (TG)n Simple_repeat Simple_repeat 2 50 0 7915 176 31 24 chr11 26854583 26855250 -123928303 - L1P LINE L1 -3002 3144 2483 6085 142 10 22 chr11 26855248 26857151 -123926402 + L1PA13 LINE L1 4163 6148 -15 * 221 119 24 0 chr11 26858114 26858156 -123925397 + (CA)n Simple_repeat Simple_repeat 2 44 0 190 370 12 0 chr11 26858751 26858832 -123924721 + L2 LINE L2 3227 3308 -5 22 0 0 0 chr11 26859170 26859192 -123924361 + AT_rich Low_complexity Low_complexity 1 22 0 2090 285 70 14 chr11 26860365 26861291 -123922262 - L1M4 LINE L1 -1769 4377 3400 540 333 116 17 chr11 26861327 26861852 -123921701 + L1MEc LINE L1 1689 2265 -4131 397 282 78 33 chr11 26861926 26862171 -123921382 + L1MEc LINE L1 2274 2529 -3686 2977 127 16 14 chr11 26862171 26862292 -123921261 + L1PB3 LINE L1 5659 5778 -376 294 106 0 0 chr11 26862292 26862339 -123921214 + (TG)n Simple_repeat Simple_repeat 2 48 0 2977 127 16 14 chr11 26862339 26862712 -123920841 + L1PB3 LINE L1 5778 6154 0 3525 235 20 5 chr11 26862724 26863568 -123919985 - L1P LINE L1 -1206 4940 4084 5610 151 42 3 chr11 26863629 26864795 -123918758 + L1PA15 LINE L1 4962 6163 -2 40 21 0 0 chr11 26864795 26864842 -123918711 + AT_rich Low_complexity Low_complexity 1 47 0 2189 214 49 44 chr11 26864842 26864997 -123918556 + L1MB7 LINE L1 5328 5481 -703 351 0 0 0 chr11 26864997 26865036 -123918517 + (TTA)n Simple_repeat Simple_repeat 2 40 0 2189 214 49 44 chr11 26865036 26865534 -123918019 + L1MB7 LINE L1 5481 5984 -200 31 26 0 0 chr11 26865849 26865887 -123917666 + AT_rich Low_complexity Low_complexity 1 38 0 194 380 38 0 chr11 26866522 26866601 -123916952 - MIR SINE MIR -23 239 158 24 0 0 0 chr11 26866676 26866700 -123916853 + AT_rich Low_complexity Low_complexity 1 24 0 2030 116 0 20 chr11 26866861 26867154 -123916399 + AluSx SINE Alu 5 291 -21 39 50 0 0 chr11 26867157 26867217 -123916336 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr11 26867857 26867880 -123915673 + AT_rich Low_complexity Low_complexity 1 23 0 1467 295 77 22 chr11 26868007 26868515 -123915038 + MLT2E LTR ERVL 11 546 -82 21 0 0 0 chr11 26868934 26868955 -123914598 + AT_rich Low_complexity Low_complexity 1 21 0 750 323 47 75 chr11 26869129 26869726 -123913827 + MLT1G LTR MaLR 11 590 0 2101 121 48 31 chr11 26870378 26870734 -123912819 - THE1B LTR MaLR 0 364 3 11099 99 13 25 chr11 26870742 26872334 -123911219 - THE1B-int LTR MaLR -7 1573 1 2107 132 48 28 chr11 26872334 26872691 -123910862 - THE1B LTR MaLR 0 364 1 1410 129 10 90 chr11 26873129 26873382 -123910171 - L1PA16 LINE L1 -1 6165 5940 2277 112 0 6 chr11 26873382 26873695 -123909858 - AluSx SINE Alu -1 311 1 1410 129 10 90 chr11 26873695 26873751 -123909802 - L1PA16 LINE L1 -226 5940 5881 1020 284 31 92 chr11 26873962 26874568 -123908985 + MLT1G LTR MaLR 7 575 -15 1633 240 25 8 chr11 26875297 26875655 -123907898 + MLT1A1 LTR MaLR 1 364 -1 310 333 263 21 chr11 26876991 26877424 -123906129 - L2 LINE L2 -338 2976 2439 426 319 146 29 chr11 26880137 26880588 -123902965 + L1ME4a LINE L1 5533 6036 -85 257 221 205 63 chr11 26880938 26881065 -123902488 + L1ME4a LINE L1 5972 6116 -5 2291 146 3 3 chr11 26881098 26881467 -123902086 - MLT1B LTR MaLR -1 389 21 2024 139 73 14 chr11 26881805 26882149 -123901404 + THE1B LTR MaLR 1 364 0 362 349 20 7 chr11 26882152 26882304 -123901249 + MIR SINE MIR 39 192 -70 205 331 99 16 chr11 26883869 26883990 -123899563 + MIR SINE MIR 127 257 -5 192 294 59 0 chr11 26884046 26884097 -123899456 + MIR SINE MIR 47 100 -162 1187 249 40 71 chr11 26884110 26884631 -123898922 + MLT1D LTR MaLR 1 505 0 986 264 111 18 chr11 26884796 26885130 -123898423 + MER92C LTR ERV1 188 552 -2 1727 166 49 30 chr11 26885645 26886013 -123897540 + THE1C LTR MaLR 1 375 0 262 373 77 12 chr11 26886156 26886325 -123897228 + MIR3 SINE MIR 24 203 -5 236 359 0 31 chr11 26888181 26888309 -123895244 + L2 LINE L2 2653 2776 -538 366 245 86 0 chr11 26888358 26888497 -123895056 - MER113 DNA MER1_type? -370 151 1 791 262 39 34 chr11 26889233 26889718 -123893835 + MLT1F1 LTR MaLR 9 559 -8 236 364 0 0 chr11 26889718 26889795 -123893758 + MIR SINE MIR 75 151 -111 1779 155 14 0 chr11 26890120 26890427 -123893126 - AluSx SINE Alu 0 311 1 2069 124 3 0 chr11 26892178 26892476 -123891077 + AluSx SINE Alu 1 299 -13 6214 130 34 49 chr11 26892961 26894124 -123889429 - MER52C LTR ERV1 -132 1146 1 1012 311 31 63 chr11 26894128 26895174 -123888379 + L1PA12 LINE L1 268 2079 -5502 * 6016 254 32 27 chr11 26895172 26895592 -123887961 + L1PA12 LINE L1 2702 3118 -4466 300 91 0 0 chr11 26895592 26895636 -123887917 + (CA)n Simple_repeat Simple_repeat 1 44 0 6016 254 32 27 chr11 26895636 26895657 -123887896 + L1PA12 LINE L1 3118 3137 -4447 1987 121 32 0 chr11 26895657 26895937 -123887616 - AluSc SINE Alu -16 293 5 6016 254 32 27 chr11 26895937 26898052 -123885501 + L1PA12 LINE L1 3137 5270 -2314 10831 215 25 4 chr11 26898245 26899210 -123884343 + L1PA16 LINE L1 2516 3459 -2707 211 70 23 23 chr11 26899210 26899253 -123884300 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 10831 215 25 4 chr11 26899253 26901767 -123881786 + L1PA16 LINE L1 3459 6060 -106 498 47 0 0 chr11 26901768 26901832 -123881721 + L1PA16 LINE L1 6097 6160 -6 306 0 0 0 chr11 26902086 26902120 -123881433 + (CAT)n Simple_repeat Simple_repeat 2 35 0 1987 157 15 15 chr11 26902312 26902649 -123880904 + MER1B DNA MER1_type 1 337 0 24 0 0 0 chr11 26903008 26903032 -123880521 + AT_rich Low_complexity Low_complexity 1 24 0 2251 89 3 13 chr11 26903561 26903864 -123879689 + AluSp SINE Alu 2 301 -12 843 154 15 0 chr11 26904132 26904268 -123879285 - MLT2B2 LTR ERVL -373 142 5 23 0 0 0 chr11 26905821 26905844 -123877709 + AT_rich Low_complexity Low_complexity 1 23 0 258 316 9 70 chr11 26906458 26906572 -123876981 - L2 LINE L2 -10 3262 3156 1858 231 24 26 chr11 26906680 26907135 -123876418 + MLT2B3 LTR ERVL 1 454 -100 408 123 15 0 chr11 26907155 26907220 -123876333 - MLT2A2 LTR ERVL -47 406 341 212 184 0 0 chr11 26907220 26907258 -123876295 + (TA)n Simple_repeat Simple_repeat 1 38 0 432 139 14 0 chr11 26907302 26907374 -123876179 - MLT2A2 LTR ERVL -40 413 341 332 167 14 0 chr11 26907383 26907455 -123876098 + (TA)n Simple_repeat Simple_repeat 2 74 0 266 156 0 0 chr11 26907455 26907500 -123876053 + MLT2A2 LTR ERVL 399 443 -10 7109 38 7 0 chr11 26907627 26908493 -123875060 + L1PA4 LINE L1 5273 6144 -11 272 355 44 14 chr11 26909561 26909755 -123873798 + MIR SINE MIR 13 211 -51 1714 199 94 5 chr11 26910040 26910433 -123873120 + MSTA LTR MaLR 1 428 0 248 183 17 0 chr11 26910636 26910696 -123872857 + (TA)n Simple_repeat Simple_repeat 1 61 0 21 71 0 0 chr11 26910938 26910980 -123872573 + AT_rich Low_complexity Low_complexity 1 42 0 438 95 16 0 chr11 26910980 26911043 -123872510 + L1P4 LINE L1 5726 5789 -377 278 208 0 14 chr11 26911059 26911131 -123872422 - L1 LINE L1 -3049 3097 3027 24 53 0 0 chr11 26911143 26911181 -123872372 + AT_rich Low_complexity Low_complexity 1 38 0 380 175 25 0 chr11 26911185 26911345 -123872208 + (TA)n Simple_repeat Simple_repeat 1 164 0 26 0 0 0 chr11 26911630 26911656 -123871897 + AT_rich Low_complexity Low_complexity 1 26 0 38 68 0 0 chr11 26912538 26912611 -123870942 + AT_rich Low_complexity Low_complexity 1 73 0 206 341 65 32 chr11 26913336 26913459 -123870094 - L2 LINE L2 -23 3290 3164 731 138 8 16 chr11 26913667 26913790 -123869763 + FLAM_C SINE Alu 1 122 -21 1295 57 0 0 chr11 26913794 26913952 -123869601 - AluSp/q SINE Alu 0 313 156 438 200 0 53 chr11 26913988 26914083 -123869470 + AluJb SINE Alu 205 294 -18 23 0 0 0 chr11 26914515 26914538 -123869015 + AT_rich Low_complexity Low_complexity 1 23 0 279 213 142 24 chr11 26914568 26914695 -123868858 + L1M4 LINE L1 2678 2819 -3327 621 183 51 6 chr11 26914709 26914884 -123868669 + L1MA7 LINE L1 6108 6290 -1 343 275 87 54 chr11 26914886 26915006 -123868547 + L1M4 LINE L1 2861 2976 -3170 1915 115 77 16 chr11 26915006 26915329 -123868224 + MER61A LTR ERV1 1 343 0 343 275 87 54 chr11 26915329 26915506 -123868047 + L1M4 LINE L1 2976 3168 -2978 1854 131 0 0 chr11 26915511 26915778 -123867775 + AluSx SINE Alu 1 267 -45 737 209 0 7 chr11 26915778 26915931 -123867622 - MER67D LTR ERV1 -359 155 4 21 71 0 0 chr11 26916809 26916851 -123866702 + AT_rich Low_complexity Low_complexity 1 42 0 302 247 169 26 chr11 26917044 26917198 -123866355 - MIR SINE MIR -20 242 67 5934 77 0 10 chr11 26917198 26917986 -123865567 - LTR17 LTR ERV1 0 780 1 23 78 0 0 chr11 26918068 26918119 -123865434 + AT_rich Low_complexity Low_complexity 1 51 0 3669 190 27 18 chr11 26918185 26919006 -123864547 + L1MA8 LINE L1 5271 6098 -193 287 333 51 58 chr11 26919468 26919606 -123863947 - MIR3 SINE MIR -67 141 5 204 319 0 66 chr11 26920857 26920948 -123862605 - L2 LINE L2 -6 3266 3182 21 36 0 0 chr11 26921129 26921157 -123862396 + AT_rich Low_complexity Low_complexity 1 28 0 187 331 79 24 chr11 26921185 26921312 -123862241 + MIR SINE MIR 73 206 -56 26 74 0 0 chr11 26922647 26922701 -123860852 + AT_rich Low_complexity Low_complexity 1 54 0 2669 132 91 86 chr11 26923315 26923903 -123859650 - MER4B LTR ERV1 0 610 17 180 0 0 0 chr11 26923903 26923923 -123859630 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2669 132 91 86 chr11 26923923 26923941 -123859612 - MER4B LTR ERV1 -593 17 1 4035 147 10 49 chr11 26923969 26924688 -123858865 + LTR8 LTR ERV1 1 691 0 192 341 30 59 chr11 26924694 26924829 -123858724 - MIR SINE MIR -118 144 14 183 100 0 0 chr11 26926148 26926178 -123857375 + (TA)n Simple_repeat Simple_repeat 1 30 0 324 211 0 0 chr11 26927693 26927769 -123855784 + GA-rich Low_complexity Low_complexity 2 77 0 304 364 6 51 chr11 26928069 26928245 -123855308 + MIR SINE MIR 9 180 -28 1164 254 109 26 chr11 26928587 26928605 -123854948 - MER20B DNA MER1_type -55 728 713 1549 236 113 19 chr11 26928605 26929066 -123854487 - MLT1D LTR MaLR -1 504 1 1164 254 109 26 chr11 26929066 26929543 -123854010 - MER20B DNA MER1_type -70 713 192 1285 264 20 60 chr11 26929543 26929874 -123853679 + L1ME1 LINE L1 5523 5825 -341 306 0 0 0 chr11 26929874 26929908 -123853645 + (TG)n Simple_repeat Simple_repeat 1 34 0 1285 264 20 60 chr11 26929908 26930125 -123853428 + L1ME1 LINE L1 5825 6049 -117 665 152 190 0 chr11 26930665 26930823 -123852730 - MER53 DNA DNA -1 188 1 24 32 0 0 chr11 26930914 26930945 -123852608 + AT_rich Low_complexity Low_complexity 1 31 0 453 294 129 111 chr11 26931574 26931914 -123851639 - L2 LINE L2 -1260 2054 1721 1688 169 43 30 chr11 26931914 26932282 -123851271 - THE1C LTR MaLR -2 373 1 453 294 129 111 chr11 26932282 26932321 -123851232 - L2 LINE L2 -1593 1721 1684 1407 193 3 56 chr11 26932321 26932627 -123850926 - AluJb SINE Alu -22 290 1 453 294 129 111 chr11 26932627 26933153 -123850400 - L2 LINE L2 -1630 1684 1132 227 307 102 30 chr11 26933134 26933300 -123850253 + MIR3 SINE MIR 5 182 -26 * 264 122 0 0 chr11 26933375 26933416 -123850137 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 1163 216 7 29 chr11 26934383 26934661 -123848892 - MLT2D LTR ERVL -142 272 1 236 333 0 0 chr11 26935347 26935410 -123848143 + MIR SINE MIR 200 262 0 27 0 0 0 chr11 26935767 26935794 -123847759 + AT_rich Low_complexity Low_complexity 1 27 0 197 65 32 0 chr11 26935874 26935905 -123847648 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 355 262 98 25 chr11 26937316 26937438 -123846115 - MER5A DNA MER1_type -3 186 56 219 69 0 0 chr11 26937734 26937763 -123845790 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2141 103 0 0 chr11 26938104 26938405 -123845148 - AluSx SINE Alu 0 301 1 299 320 73 27 chr11 26938451 26938601 -123844952 - L2 LINE L2 -1 3312 3156 460 223 71 0 chr11 26938610 26938722 -123844831 - L2 LINE L2 -834 2480 2361 1890 163 152 0 chr11 26939083 26939457 -123844096 - LTR47A LTR ERVL -19 433 3 271 248 29 86 chr11 26939559 26939664 -123843889 + L2 LINE L2 3215 3313 0 1969 42 0 0 chr11 26940484 26940725 -123842828 + L1PA4 LINE L1 5912 6152 -3 276 392 40 0 chr11 26940731 26940856 -123842697 - MER5B DNA MER1_type -48 130 1 21 71 0 0 chr11 26940960 26941002 -123842551 + AT_rich Low_complexity Low_complexity 1 42 0 219 69 0 0 chr11 26941391 26941420 -123842133 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 198 220 237 0 chr11 26943182 26943241 -123840312 + L2 LINE L2 3199 3271 -1 580 344 51 42 chr11 26944552 26945107 -123838446 + L2 LINE L2 2742 3313 0 2297 89 6 10 chr11 26945170 26945483 -123838070 - AluSp SINE Alu -1 312 1 24 0 0 0 chr11 26945672 26945696 -123837857 + AT_rich Low_complexity Low_complexity 1 24 0 1561 165 59 14 chr11 26947007 26947365 -123836188 - L1MA9 LINE L1 0 6312 5939 2462 242 15 5 chr11 26948506 26949102 -123834451 - L1MB8 LINE L1 -88 6090 5489 279 305 85 0 chr11 26949096 26949237 -123834316 - L1MB8 LINE L1 -1927 4219 4067 * 203 282 84 28 chr11 26949794 26949865 -123833688 - L2 LINE L2 -12 3260 3186 2399 170 105 1 chr11 26950569 26951025 -123832528 + MER61D LTR ERV1 1 500 -1 1335 42 0 0 chr11 26951293 26951460 -123832093 - L1PA4 LINE L1 0 6155 5989 1878 204 41 22 chr11 26952094 26952822 -123830731 + LTR39 LTR ERV1 1 783 0 4214 245 71 35 chr11 26953301 26953466 -123830087 - L1MD1 LINE L1 -307 5935 5777 225 0 0 0 chr11 26953466 26953491 -123830062 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 4214 245 71 35 chr11 26953491 26955362 -123828191 - L1MD1 LINE L1 -465 5777 3796 1533 83 28 5 chr11 26955362 26955578 -123827975 - AluY SINE Alu -3 308 88 4214 245 71 35 chr11 26955578 26956082 -123827471 - L1MD1 LINE L1 -2446 3796 3312 2281 113 0 6 chr11 26957228 26957539 -123826014 - AluSx SINE Alu -3 309 1 2556 174 24 2 chr11 26957751 26958206 -123825347 + LTR32 LTR ERVL 7 471 0 728 183 0 0 chr11 26958256 26958382 -123825171 - FLAM_C SINE Alu -10 133 8 849 247 13 26 chr11 26958527 26958754 -123824799 + MER58A DNA MER1_type 1 224 0 237 145 65 32 chr11 26958989 26959051 -123824502 - MLT1F LTR MaLR -212 330 267 369 264 159 50 chr11 26960380 26960539 -123823014 - MIR SINE MIR -15 247 64 1601 181 144 5 chr11 26960539 26960915 -123822638 + MSTA LTR MaLR 1 428 0 369 264 159 50 chr11 26960915 26960937 -123822616 - MIR SINE MIR -198 64 46 330 353 33 20 chr11 26961275 26961425 -123822128 + MIR SINE MIR 41 192 -70 182 342 118 0 chr11 26962103 26962179 -123821374 - L2 LINE L2 -4 3309 3225 203 229 243 0 chr11 26962631 26962701 -123820852 + MIR SINE MIR 68 154 -108 555 298 44 28 chr11 26962740 26962992 -123820561 + MIR SINE MIR 2 257 -5 199 258 16 16 chr11 26963024 26963086 -123820467 + MIR SINE MIR 201 262 0 2065 136 3 7 chr11 26963324 26963634 -123819919 + AluSx SINE Alu 1 309 -3 455 228 89 11 chr11 26963799 26963979 -123819574 - LTR37A LTR ERV1 -9 417 224 1884 148 91 90 chr11 26964049 26964660 -123818893 + MER4D LTR ERV1 1 725 -54 1585 154 103 74 chr11 26964883 26965541 -123818012 + MER4D LTR ERV1 1 770 -9 253 293 120 3 chr11 26965720 26965836 -123817717 - MIR SINE MIR -65 143 28 771 226 75 5 chr11 26965841 26966040 -123817513 + MER20 DNA MER1_type 2 214 -5 636 253 96 92 chr11 26967101 26967393 -123816160 - L2 LINE L2 -619 2695 2403 225 216 93 62 chr11 26968263 26968360 -123815193 - MLT1J LTR MaLR -3 508 409 21 0 0 0 chr11 26968786 26968807 -123814746 + AT_rich Low_complexity Low_complexity 1 21 0 623 316 128 44 chr11 26969006 26969551 -123814002 + MLT1G1 LTR MaLR 3 593 -2 22 0 0 0 chr11 26969908 26969930 -123813623 + AT_rich Low_complexity Low_complexity 1 22 0 3222 274 95 10 chr11 26970514 26972071 -123811482 - L1M4 LINE L1 -1925 4457 2769 1873 152 17 20 chr11 26972227 26972583 -123810970 - THE1A LTR MaLR 0 355 1 6181 131 19 0 chr11 26972583 26973482 -123810071 - THE1A-int LTR MaLR 0 1580 665 2206 68 0 0 chr11 26973557 26973836 -123809717 + HERV17 LTR ERV1 1674 1952 -6674 17488 66 4 4 chr11 26974029 26978119 -123805434 + HERV17 LTR ERV1 1537 7357 -1269 329 280 27 0 chr11 26978093 26978168 -123805385 + LTR17 LTR ERV1 704 780 0 * 345 291 136 38 chr11 26978173 26978489 -123805064 - L1M4 LINE L1 -4010 2374 2028 1565 123 34 27 chr11 26978564 26978856 -123804697 - L1MA5 LINE L1 -1 6299 6006 632 150 38 23 chr11 26979197 26979330 -123804223 + L1MA4A LINE L1 6164 6298 -5 180 0 0 0 chr11 26979745 26979765 -123803788 + (TG)n Simple_repeat Simple_repeat 2 21 0 190 122 20 20 chr11 26979765 26979814 -123803739 + (TA)n Simple_repeat Simple_repeat 2 50 0 785 284 57 3 chr11 26980312 26980647 -123802906 - L1M4 LINE L1 -2940 3206 2854 1079 257 91 18 chr11 26980648 26981033 -123802520 + MLT1C LTR MaLR 3 415 -52 190 269 64 64 chr11 26981485 26981563 -123801990 + L2 LINE L2 2412 2489 -825 382 248 96 8 chr11 26982197 26982322 -123801231 - L1MB1 LINE L1 -358 5831 5696 2483 182 12 14 chr11 26982530 26983040 -123800513 + L1MA10 LINE L1 5813 6321 -13 523 111 49 5 chr11 26983047 26983258 -123800295 + (TA)n Simple_repeat Simple_repeat 1 220 0 927 149 7 7 chr11 26983258 26983406 -123800147 - AluJb SINE Alu -164 148 1 24 67 0 0 chr11 26983406 26983451 -123800102 + AT_rich Low_complexity Low_complexity 1 45 0 230 331 48 48 chr11 26983552 26983697 -123799856 - MIR SINE MIR -113 149 5 1442 234 50 39 chr11 26984033 26984396 -123799157 + LTR39 LTR ERV1 417 783 0 245 299 28 56 chr11 26984528 26984635 -123798918 - MIR SINE MIR -140 122 19 1346 226 42 0 chr11 26984801 26985088 -123798465 - MER58B DNA MER1_type -1 340 42 594 233 0 0 chr11 26985491 26985624 -123797929 + L1MB1 LINE L1 6029 6161 -7 609 264 93 16 chr11 26985740 26985922 -123797631 + MER63A DNA MER1_type 6 201 -9 199 325 38 25 chr11 26985929 26986009 -123797544 + MIR SINE MIR 64 144 -64 227 331 185 16 chr11 26986188 26986372 -123797181 + MIR SINE MIR 48 262 0 301 312 50 18 chr11 26986605 26986731 -123796822 - MIR SINE MIR -65 143 19 416 291 0 0 chr11 26987900 26988017 -123795536 + L1ME3A LINE L1 6028 6144 -26 560 167 0 0 chr11 26988073 26988169 -123795384 + L1MB3 LINE L1 6074 6169 -14 409 298 172 5 chr11 26988647 26988845 -123794708 + MIR SINE MIR 32 262 0 942 63 79 0 chr11 26989488 26989615 -123793938 + MER85 DNA T2_type 1 137 -2 1798 161 26 9 chr11 26990478 26990820 -123792733 - L1MA9 LINE L1 0 6312 5965 3484 176 33 20 chr11 26990826 26991037 -123792516 + L1MA9 LINE L1 4776 4983 -1329 2372 67 6 10 chr11 26991037 26991349 -123792204 + AluY SINE Alu 1 311 0 3484 176 33 20 chr11 26991349 26992300 -123791253 + L1MA9 LINE L1 4983 5959 -353 225 297 22 55 chr11 26992655 26992746 -123790807 - MER5A DNA MER1_type -6 183 96 * 413 371 70 41 chr11 26992726 26993216 -123790337 + L2 LINE L2 2752 3259 -13 25 0 0 0 chr11 26993739 26993764 -123789789 + AT_rich Low_complexity Low_complexity 1 25 0 1233 178 97 39 chr11 26993944 26994253 -123789300 - MER45B DNA AcHobo 0 1040 714 1253 317 80 43 chr11 26994399 26994963 -123788590 - MER45C DNA AcHobo -833 120 27 5057 30 0 0 chr11 26995657 26996250 -123787303 + L1PA3 LINE L1 5558 6150 -5 304 342 26 0 chr11 26996259 26996373 -123787180 - L2 LINE L2 -813 2501 2385 1165 197 55 93 chr11 26996376 26996797 -123786756 + LTR7 LTR ERV1 1 405 -45 207 167 0 0 chr11 26996854 26996890 -123786663 + GA-rich Low_complexity Low_complexity 2 37 0 234 337 50 50 chr11 26997889 26998070 -123785483 - MIR3 SINE MIR -9 199 19 2815 208 60 32 chr11 26998222 26998962 -123784591 - L1MD1 LINE L1 -8 6234 5475 342 210 118 8 chr11 26998956 26999075 -123784478 - L1MA4 LINE L1 -3 6297 6166 * 282 212 79 30 chr11 26999154 26999319 -123784234 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 288 194 30 0 chr11 26999326 26999393 -123784160 - MLT1D LTR MaLR 0 626 558 4558 139 25 45 chr11 26999395 26999891 -123783662 - L1PB4 LINE L1 -2 6154 5650 1828 131 45 3 chr11 26999891 27000182 -123783371 + AluSg SINE Alu 5 307 -3 4558 139 25 45 chr11 27000182 27000195 -123783358 - L1PB4 LINE L1 -506 5650 5638 646 202 8 0 chr11 27000195 27000314 -123783239 - FLAM_C SINE Alu -13 120 1 4558 139 25 45 chr11 27000314 27000630 -123782923 - L1PB4 LINE L1 -518 5638 5344 947 253 21 22 chr11 27000630 27000997 -123782556 - MLT1D LTR MaLR -71 388 1 259 223 43 64 chr11 27001094 27001188 -123782365 + L2 LINE L2 3222 3313 0 198 406 9 19 chr11 27001653 27001759 -123781794 - MIR SINE MIR -136 126 22 495 366 63 12 chr11 27002530 27002784 -123780769 + L2 LINE L2 3000 3266 -6 218 313 0 73 chr11 27002788 27002884 -123780669 - MIR SINE MIR -146 116 28 202 258 15 76 chr11 27003488 27003554 -123779999 - L2 LINE L2 -14 3299 3238 34 0 0 0 chr11 27004837 27004871 -123778682 + AT_rich Low_complexity Low_complexity 1 34 0 906 281 138 17 chr11 27005545 27005901 -123777652 + LTR40a LTR ERVL 2 400 -119 189 349 64 37 chr11 27006303 27006412 -123777141 - L2 LINE L2 -22 3250 3139 29 0 0 0 chr11 27007036 27007065 -123776488 + AT_rich Low_complexity Low_complexity 1 29 0 1150 169 169 43 chr11 27007698 27007999 -123775554 + MER2 DNA MER2_type 7 345 0 581 185 23 15 chr11 27008270 27008400 -123775153 - Charlie3 DNA MER1_type -33 2677 2547 603 297 33 26 chr11 27009070 27009373 -123774180 - L1PA12 LINE L1 -7276 305 1 198 368 108 11 chr11 27009696 27009881 -123773672 - MIR SINE MIR 0 262 60 216 0 0 0 chr11 27013037 27013061 -123770492 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 22 35 0 0 chr11 27013123 27013152 -123770401 + AT_rich Low_complexity Low_complexity 1 29 0 1902 304 64 50 chr11 27014136 27014448 -123769105 + L2 LINE L2 1986 2292 -1021 1172 289 68 36 chr11 27014448 27015084 -123768469 + MLT2F LTR ERVL 5 660 -3 1902 304 64 50 chr11 27015084 27016088 -123767465 + L2 LINE L2 2292 3312 -1 9372 150 14 27 chr11 27016283 27016426 -123767127 + Tigger1 DNA MER2_type 357 500 -1918 1456 219 3 0 chr11 27016426 27016709 -123766844 + AluJo SINE Alu 7 290 -22 9372 150 14 27 chr11 27016709 27018186 -123765367 + Tigger1 DNA MER2_type 500 1955 -463 1890 166 102 5 chr11 27018187 27018561 -123764992 - MSTA LTR MaLR 0 428 19 1568 165 80 15 chr11 27018564 27018891 -123764662 + Tigger1 DNA MER2_type 1966 2313 -105 279 122 0 0 chr11 27018895 27018936 -123764617 - MSTA LTR MaLR -2 426 386 779 201 0 0 chr11 27018998 27019137 -123764416 + Tigger1 DNA MER2_type 2280 2418 0 5181 147 18 16 chr11 27019414 27020315 -123763238 - MER4D LTR ERV1 0 903 1 2212 95 0 46 chr11 27021133 27021458 -123762095 - AluSg SINE Alu 0 310 1 3811 146 10 60 chr11 27021500 27022228 -123761325 + LTR8 LTR ERV1 1 691 0 21 0 0 0 chr11 27022307 27022328 -123761225 + AT_rich Low_complexity Low_complexity 1 21 0 2120 122 0 0 chr11 27022745 27023032 -123760521 + AluSg SINE Alu 1 287 -23 375 43 123 7 chr11 27023034 27023172 -123760381 + (TA)n Simple_repeat Simple_repeat 1 154 0 202 88 0 88 chr11 27023273 27023330 -123760223 + (TATAA)n Simple_repeat Simple_repeat 1 52 0 498 86 21 81 chr11 27023335 27023521 -123760032 + (TTATA)n Simple_repeat Simple_repeat 1 175 0 23 68 0 0 chr11 27023521 27023565 -123759988 + AT_rich Low_complexity Low_complexity 1 44 0 577 92 78 6 chr11 27023571 27023899 -123759654 + (TA)n Simple_repeat Simple_repeat 1 351 0 1181 205 77 25 chr11 27024007 27025053 -123758500 - L1M1 LINE L1 -743 5639 4648 444 37 0 0 chr11 27025053 27025107 -123758446 + (TG)n Simple_repeat Simple_repeat 1 54 0 1181 205 77 25 chr11 27025107 27027302 -123756251 - L1M1 LINE L1 -1734 4648 2140 338 162 59 0 chr11 27027699 27027767 -123755786 + LTR16C LTR ERVL 420 491 0 315 352 115 16 chr11 27028255 27028437 -123755116 - MIR SINE MIR -34 228 29 228 292 67 50 chr11 27028629 27028749 -123754804 + MIR SINE MIR 91 212 -50 1426 213 60 24 chr11 27030222 27030648 -123752905 + MER89 LTR ERV1 19 559 0 187 279 118 93 chr11 27030854 27031015 -123752538 - MIR SINE MIR -67 195 31 678 259 139 5 chr11 27031042 27031258 -123752295 + MIR SINE MIR 2 246 -16 668 178 32 80 chr11 27032728 27032897 -123750656 + MER4C LTR ERV1 2 178 -287 2157 103 0 0 chr11 27032897 27033212 -123750341 + AluSg SINE Alu 1 315 0 668 178 32 80 chr11 27033212 27033676 -123749877 + MER4C LTR ERV1 178 463 -2 2937 91 31 0 chr11 27033895 27034313 -123749240 - MER57B LTR ERV1 -3 431 1 1018 235 153 31 chr11 27034586 27034939 -123748614 + MSTD LTR MaLR 1 396 0 518 283 112 19 chr11 27035127 27035332 -123748221 - MIR SINE MIR -30 232 9 1344 239 107 67 chr11 27036049 27036631 -123746922 + MER21B LTR ERV1 126 730 -133 325 346 20 0 chr11 27036796 27036949 -123746604 + MARNA DNA Mariner 228 383 -203 221 278 99 73 chr11 27037395 27037462 -123746091 + MIR SINE MIR 67 131 -131 1811 174 0 7 chr11 27037462 27037750 -123745803 + AluJb SINE Alu 5 290 -22 221 278 99 73 chr11 27037750 27037873 -123745680 + MIR SINE MIR 131 262 0 485 287 81 34 chr11 27040252 27040461 -123743092 + MIR SINE MIR 31 249 -13 665 186 9 0 chr11 27041814 27041927 -123741626 + MLT1A1 LTR MaLR 1 114 -251 222 264 33 0 chr11 27042357 27042448 -123741105 + (TA)n Simple_repeat Simple_repeat 1 94 0 717 288 233 14 chr11 27042504 27042921 -123740632 - L2 LINE L2 -455 2859 2352 280 272 117 19 chr11 27043435 27043538 -123740015 - MIR SINE MIR -34 228 116 27 29 0 0 chr11 27044532 27044566 -123738987 + AT_rich Low_complexity Low_complexity 1 34 0 233 246 98 0 chr11 27044908 27044969 -123738584 + MIR3 SINE MIR 104 170 -38 31 88 0 0 chr11 27045330 27045410 -123738143 + AT_rich Low_complexity Low_complexity 1 80 0 1067 144 0 28 chr11 27045786 27045966 -123737587 + AluSx SINE Alu 1 175 -137 241 250 0 0 chr11 27046067 27046115 -123737438 + polypurine Low_complexity Low_complexity 3 50 0 1119 156 120 0 chr11 27046115 27046307 -123737246 - MER4E LTR ERV1 -9 770 556 359 316 37 0 chr11 27046649 27046785 -123736768 + MIR SINE MIR 22 162 -100 22 35 0 0 chr11 27047396 27047425 -123736128 + AT_rich Low_complexity Low_complexity 1 29 0 279 0 0 0 chr11 27049014 27049045 -123734508 + (A)n Simple_repeat Simple_repeat 1 31 0 258 246 212 17 chr11 27049981 27050099 -123733454 - L2 LINE L2 -1 3312 3172 246 65 0 194 chr11 27050114 27050144 -123733409 + MADE1 DNA Mariner 1 15 -65 3143 91 31 0 chr11 27050144 27050595 -123732958 + L1PA8 LINE L1 5707 6171 -1 246 65 0 194 chr11 27050595 27050626 -123732927 + MADE1 DNA Mariner 15 50 -30 927 169 55 0 chr11 27050628 27050811 -123732742 - Tigger7 DNA MER2_type -177 2310 2118 3502 215 38 4 chr11 27050814 27051544 -123732009 - Tigger7 DNA MER2_type -1720 767 13 358 307 26 0 chr11 27051585 27051699 -123731854 - MLT2E LTR ERVL -502 126 10 511 315 86 0 chr11 27051708 27051905 -123731648 - L2 LINE L2 -1014 2300 2087 3273 125 17 2 chr11 27053399 27053921 -123729632 - MER51C LTR ERV1 -125 515 1 1500 251 82 95 chr11 27053957 27055159 -123728394 + L1MC4a LINE L1 5555 6741 -1067 1698 240 112 53 chr11 27055188 27055782 -123727771 - MER50 LTR ERV1 -19 715 77 2286 72 7 10 chr11 27055782 27056088 -123727465 - AluY SINE Alu -6 305 1 1698 240 112 53 chr11 27056088 27056156 -123727397 - MER50 LTR ERV1 -657 77 14 1418 256 105 58 chr11 27056162 27056968 -123726585 + L1MC4 LINE L1 6823 7675 -367 2443 43 3 30 chr11 27056968 27057267 -123726286 + AluY SINE Alu 1 291 -20 1418 256 105 58 chr11 27057267 27057339 -123726214 + L1MC4 LINE L1 7675 7742 -300 328 241 72 0 chr11 27057345 27057428 -123726125 - L1MC4 LINE L1 -1339 6703 6615 884 136 7 19 chr11 27057429 27057584 -123725969 + LTR8A LTR ERV1 10 162 -565 228 81 0 27 chr11 27057584 27057621 -123725932 + Charlie3 DNA MER1_type 1 36 -2674 326 268 32 49 chr11 27057781 27057904 -123725649 + L1MC4 LINE L1 7922 8042 0 4878 150 19 33 chr11 27058527 27059445 -123724108 - L1PA16 LINE L1 -2 6164 5260 597 166 222 0 chr11 27059995 27060200 -123723353 - L1M4 LINE L1 -708 5470 5224 333 330 165 9 chr11 27061390 27061614 -123721939 - MIR SINE MIR -3 259 1 310 332 115 25 chr11 27061767 27062131 -123721422 - L2 LINE L2 -2 3311 2915 257 305 37 68 chr11 27062516 27062706 -123720847 + L2 LINE L2 3098 3281 -32 297 0 0 0 chr11 27062717 27062750 -123720803 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 25 0 0 0 chr11 27063773 27063798 -123719755 + AT_rich Low_complexity Low_complexity 1 25 0 1803 158 10 3 chr11 27064287 27064578 -123718975 + AluSx SINE Alu 1 293 -19 304 309 20 33 chr11 27064814 27064966 -123718587 - MIR SINE MIR -37 225 76 1626 208 85 105 chr11 27065289 27065841 -123717712 + MER67A LTR ERV1 1 541 -2 308 385 18 35 chr11 27066339 27066508 -123717045 + MIR SINE MIR 17 182 -80 43076 42 3 2 chr11 27066510 27072644 -123710909 + L1PA3 LINE L1 13 6155 0 9006 60 2 0 chr11 27122859 27124037 -123659516 - L1P LINE L1 -2815 3331 2151 516 366 15 26 chr11 27124139 27124412 -123659141 + L2 LINE L2 2608 2877 -437 7593 28 0 2 chr11 27124529 27125704 -123657849 + L1PA4 LINE L1 4983 6155 0 336 345 73 6 chr11 27128888 27129053 -123654500 - L3 LINE CR1 -10 1567 1392 21 57 0 0 chr11 27129053 27129088 -123654465 + AT_rich Low_complexity Low_complexity 1 35 0 216 286 57 0 chr11 27129122 27129192 -123654361 - L3 LINE CR1 -320 1257 1184 249 33 0 0 chr11 27129192 27129222 -123654331 + (TG)n Simple_repeat Simple_repeat 1 30 0 456 354 35 9 chr11 27129735 27129964 -123653589 - MIR SINE MIR -19 243 9 2058 197 13 3 chr11 27130455 27130841 -123652712 - MSTB-int LTR MaLR -1261 390 1 2246 186 9 32 chr11 27130841 27131277 -123652276 - MSTB LTR MaLR 0 426 1 22 0 0 0 chr11 27132233 27132255 -123651298 + AT_rich Low_complexity Low_complexity 1 22 0 1819 194 53 10 chr11 27132505 27132999 -123650554 - MER69 DNA AcHobo -13 2513 1999 471 356 21 5 chr11 27132995 27133183 -123650370 - MER69 DNA AcHobo -1969 557 367 * 312 143 20 0 chr11 27133210 27133259 -123650294 - L2 LINE L2 -560 2754 2705 24 53 0 0 chr11 27133588 27133626 -123649927 + AT_rich Low_complexity Low_complexity 1 38 0 2202 183 27 27 chr11 27134096 27134582 -123648971 - L1MB3 LINE L1 -4 6179 5694 267 260 120 20 chr11 27135018 27135118 -123648435 - MER117 DNA MER1_type -45 152 43 529 311 80 9 chr11 27135569 27135794 -123647759 - HERV16 LTR ERVL -4755 241 1 619 257 98 86 chr11 27135826 27136164 -123647389 - LTR16A LTR ERVL -32 418 77 214 267 0 0 chr11 27136667 27136712 -123646841 + MIR SINE MIR 64 108 -100 2058 110 4 0 chr11 27137840 27138113 -123645440 + AluSx SINE Alu 1 274 -38 207 360 0 0 chr11 27139046 27139096 -123644457 - MIR SINE MIR -6 256 207 1790 241 98 51 chr11 27139980 27140624 -123642929 + MER76 LTR ERV 1 674 -14 232 214 18 18 chr11 27140672 27140728 -123642825 + MIR SINE MIR 20 75 -187 1505 149 34 47 chr11 27140742 27141038 -123642515 + MLT1B LTR MaLR 2 293 -97 204 386 63 0 chr11 27141601 27141728 -123641825 - L2 LINE L2 0 3272 3138 505 204 0 0 chr11 27142957 27143045 -123640508 + Tigger2 DNA MER2_type 400 487 -2231 1538 115 0 5 chr11 27143149 27143358 -123640195 - AluSg SINE Alu -98 212 5 568 303 48 21 chr11 27143765 27144010 -123639543 + MIR SINE MIR 14 261 -1 396 332 78 30 chr11 27144361 27144695 -123638858 + MLT1K LTR MaLR 194 543 -45 6806 71 7 11 chr11 27144697 27145121 -123638432 + L1PA8 LINE L1 4870 5294 -878 2557 45 3 3 chr11 27145121 27145429 -123638124 + AluY SINE Alu 1 308 -3 6806 71 7 11 chr11 27145429 27146308 -123637245 + L1PA8 LINE L1 5294 6170 -2 1143 228 71 77 chr11 27146926 27147365 -123636188 - MLT2B1 LTR ERVL 0 520 85 2115 256 47 104 chr11 27147469 27148506 -123635047 - L2 LINE L2 -1197 2117 1140 413 131 12 0 chr11 27148521 27148605 -123634948 + (CA)n Simple_repeat Simple_repeat 1 85 0 213 132 0 0 chr11 27148670 27148708 -123634845 + (TC)n Simple_repeat Simple_repeat 1 38 0 228 276 58 11 chr11 27148730 27148817 -123634736 - L2 LINE L2 -1187 2127 2037 296 276 92 0 chr11 27148831 27148929 -123634624 - MIR3 SINE MIR -9 199 93 2327 110 0 0 chr11 27149167 27149476 -123634077 - AluSg SINE Alu -1 309 1 274 349 29 16 chr11 27149579 27149709 -123633844 + MIR3 SINE MIR 28 160 -48 2186 123 0 0 chr11 27150541 27150849 -123632704 + AluSc SINE Alu 1 308 -1 5628 136 20 3 chr11 27151148 27152036 -123631517 + L1PA16 LINE L1 5255 6157 -9 2023 115 17 3 chr11 27152051 27152339 -123631214 - AluSc SINE Alu -17 292 1 249 202 48 12 chr11 27152939 27153023 -123630530 - L1MC/D LINE L1 -1926 5882 5796 282 240 80 57 chr11 27153048 27153223 -123630330 - L1MC/D LINE L1 -377 5744 5566 3664 133 64 15 chr11 27153458 27154111 -123629442 + Tigger2 DNA MER2_type 657 1341 -1377 4547 148 4 25 chr11 27154265 27154848 -123628705 + Tigger2 DNA MER2_type 1341 1906 -812 369 0 0 0 chr11 27154848 27154889 -123628664 + (CA)n Simple_repeat Simple_repeat 2 42 0 4547 148 4 25 chr11 27154889 27155076 -123628477 + Tigger2 DNA MER2_type 1906 2095 -623 25 114 0 0 chr11 27155400 27155523 -123628030 + AT_rich Low_complexity Low_complexity 1 123 0 307 336 8 25 chr11 27155648 27155767 -123627786 + MLT1I LTR MaLR 278 394 -15 27 29 0 0 chr11 27156008 27156042 -123627511 + AT_rich Low_complexity Low_complexity 1 34 0 32 43 0 0 chr11 27156150 27156196 -123627357 + AT_rich Low_complexity Low_complexity 1 46 0 214 273 23 34 chr11 27156845 27156933 -123626620 + L3 LINE CR1 1274 1360 -217 319 376 44 17 chr11 27157060 27157241 -123626312 + MIR SINE MIR 28 213 -49 354 344 27 38 chr11 27157426 27157612 -123625941 - MER5B DNA MER1_type -5 173 1 221 405 66 21 chr11 27158634 27158892 -123624661 + L2 LINE L2 2717 2982 -290 228 343 0 15 chr11 27159394 27159461 -123624092 + MLT1K LTR MaLR 161 226 -362 425 321 63 51 chr11 27159824 27160061 -123623492 + LTR16C LTR ERVL 247 486 -5 204 135 0 0 chr11 27160068 27160105 -123623448 + (TG)n Simple_repeat Simple_repeat 2 38 0 186 333 23 11 chr11 27160264 27160351 -123623202 - L2 LINE L2 -633 2681 2594 25 31 0 0 chr11 27160483 27160515 -123623038 + AT_rich Low_complexity Low_complexity 1 32 0 811 182 41 0 chr11 27160641 27160811 -123622742 + L1M4 LINE L1 5227 5403 -743 1209 253 20 83 chr11 27160816 27161275 -123622278 - L1M4 LINE L1 -6105 437 8 298 157 29 14 chr11 27161280 27161350 -123622203 - L1MC4a LINE L1 -79 7729 7659 * 461 284 62 25 chr11 27161348 27161510 -123622043 - L1MD2 LINE L1 -214 6145 5978 2749 161 43 6 chr11 27161847 27162339 -123621214 - MER41E LTR ERV1 -2 510 1 217 127 0 55 chr11 27162473 27162528 -123621025 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1913 122 10 3 chr11 27162528 27162816 -123620737 - AluSc SINE Alu -19 290 1 740 189 110 63 chr11 27163174 27163428 -123620125 + L1MA10 LINE L1 6057 6322 -12 771 271 99 84 chr11 27163498 27164496 -123619057 - HAL1 LINE L1 -79 2428 1404 2381 102 0 0 chr11 27164496 27164809 -123618744 - AluSq SINE Alu 0 313 1 771 271 99 84 chr11 27164809 27165107 -123618446 - HAL1 LINE L1 -1103 1404 1112 2261 258 71 28 chr11 27165207 27165559 -123617994 - L1ME1 LINE L1 -30 6634 6298 1840 197 78 27 chr11 27165559 27166036 -123617517 - MLT1D LTR MaLR 0 505 5 2261 258 71 28 chr11 27166036 27167120 -123616433 - L1ME1 LINE L1 -366 6298 5127 2407 77 0 0 chr11 27167120 27167419 -123616134 - AluSc SINE Alu -10 299 1 2261 258 71 28 chr11 27167419 27167506 -123616047 - L1ME1 LINE L1 -1537 5127 5045 404 305 86 30 chr11 27167544 27167741 -123615812 - L1ME1 LINE L1 -4871 1671 1464 2314 269 69 52 chr11 27167741 27168766 -123614787 - L1ME1 LINE L1 -5238 1587 545 216 0 0 0 chr11 27168826 27168850 -123614703 + (TG)n Simple_repeat Simple_repeat 2 25 0 207 257 35 9 chr11 27168857 27168970 -123614583 + (TA)n Simple_repeat Simple_repeat 1 116 0 466 305 69 17 chr11 27169177 27169351 -123614202 - LTR16B LTR ERVL -279 185 3 677 314 0 0 chr11 27169430 27169599 -123613954 - MIR SINE MIR -27 235 67 22 56 0 0 chr11 27170071 27170107 -123613446 + AT_rich Low_complexity Low_complexity 1 36 0 1257 231 94 24 chr11 27171112 27171665 -123611888 - MER69 DNA AcHobo -3 2523 1932 411 38 0 0 chr11 27171696 27171749 -123611804 + (TA)n Simple_repeat Simple_repeat 2 54 0 264 339 197 3 chr11 27172059 27172348 -123611205 - L2 LINE L2 0 3313 2969 344 299 160 24 chr11 27172398 27172773 -123610780 - L2 LINE L2 -435 2879 2454 304 331 41 0 chr11 27172831 27172952 -123610601 - MIR SINE MIR -74 188 63 2287 53 3 23 chr11 27173000 27173302 -123610251 + AluY SINE Alu 1 296 -15 480 280 73 13 chr11 27174730 27174880 -123608673 + MER5B DNA MER1_type 1 159 -19 409 256 181 23 chr11 27174935 27175068 -123608485 - MER5A DNA MER1_type -6 183 30 250 329 73 0 chr11 27175544 27175626 -123607927 + L2 LINE L2 3149 3236 -36 1096 258 19 16 chr11 27175680 27175936 -123607617 - MIR SINE MIR 0 262 6 700 226 5 85 chr11 27175935 27176134 -123607419 - MIR SINE MIR -75 187 5 * 356 287 93 0 chr11 27177395 27177503 -123606050 - L2 LINE L2 -3 3310 3193 208 361 84 42 chr11 27177596 27177809 -123605744 + MIR SINE MIR 26 247 -15 410 168 35 0 chr11 27177889 27178002 -123605551 + (TA)n Simple_repeat Simple_repeat 1 117 0 10636 97 7 22 chr11 27178109 27179683 -123603870 - L1P LINE L1 -3980 2166 617 690 111 10 0 chr11 27179674 27179773 -123603780 - L1P LINE L1 -6045 101 2 * 393 22 0 0 chr11 27180248 27180294 -123603259 + (TA)n Simple_repeat Simple_repeat 2 47 0 242 241 69 23 chr11 27180378 27180465 -123603088 - MIR3 SINE MIR -13 195 105 300 232 40 72 chr11 27180506 27180631 -123602922 - MIR SINE MIR -52 210 90 363 182 0 0 chr11 27181120 27181208 -123602345 - L1MA8 LINE L1 0 6291 6204 194 309 100 27 chr11 27181258 27181368 -123602185 - MIR SINE MIR -109 153 36 22 0 0 0 chr11 27182207 27182229 -123601324 + AT_rich Low_complexity Low_complexity 1 22 0 1843 184 51 8 chr11 27182792 27183166 -123600387 + MLT1B LTR MaLR 1 390 0 531 319 162 11 chr11 27184098 27184449 -123599104 - LTR33A LTR ERVL -4 519 116 1287 207 69 46 chr11 27184780 27184974 -123598579 - MLT1A1 LTR MaLR 0 365 177 189 0 0 0 chr11 27184974 27184995 -123598558 + (TC)n Simple_repeat Simple_repeat 2 22 0 189 0 0 0 chr11 27184994 27185015 -123598538 + (TG)n Simple_repeat Simple_repeat 2 22 0 1287 207 69 46 chr11 27184995 27185168 -123598385 - MLT1A1 LTR MaLR -188 177 10 241 327 79 10 chr11 27187305 27187406 -123596147 + MIR SINE MIR 84 191 -71 2003 97 10 68 chr11 27188061 27188369 -123595184 - AluSc SINE Alu -19 290 1 209 304 0 43 chr11 27189314 27189383 -123594170 + L2 LINE L2 3246 3311 -2 21 0 0 0 chr11 27190206 27190227 -123593326 + AT_rich Low_complexity Low_complexity 1 21 0 195 184 0 0 chr11 27190548 27190586 -123592967 + (CATA)n Simple_repeat Simple_repeat 3 40 0 862 275 15 0 chr11 27190716 27190916 -123592637 - MER20 DNA MER1_type -15 204 2 2220 75 0 14 chr11 27192165 27192457 -123591096 + AluSg SINE Alu 13 300 -10 492 345 42 29 chr11 27192721 27193103 -123590450 + L1MC4 LINE L1 4771 5157 -989 24 24 0 24 chr11 27193167 27193194 -123590359 + AT_rich Low_complexity Low_complexity 1 28 -13 2219 119 37 3 chr11 27193194 27193546 -123590007 - THE1B LTR MaLR 0 364 1 24 24 0 24 chr11 27193546 27193560 -123589993 + AT_rich Low_complexity Low_complexity 28 41 0 836 273 80 51 chr11 27193565 27193703 -123589850 + L1MC4 LINE L1 5265 5398 -2410 225 0 0 0 chr11 27193703 27193728 -123589825 + (TA)n Simple_repeat Simple_repeat 2 26 0 836 273 80 51 chr11 27193728 27193978 -123589575 + L1MC4 LINE L1 5398 5664 -2144 1807 259 114 2 chr11 27193997 27194576 -123588977 + LTR48B LTR ERV1 1 644 0 1343 300 55 25 chr11 27194629 27195163 -123588390 + L1MC4 LINE L1 7044 7608 -434 423 0 0 0 chr11 27195163 27195210 -123588343 + (CA)n Simple_repeat Simple_repeat 1 47 0 1343 300 55 25 chr11 27195210 27195419 -123588134 + L1MC4 LINE L1 7608 7809 -233 191 395 13 0 chr11 27195789 27195865 -123587688 - MIR SINE MIR -180 82 6 283 297 35 15 chr11 27195868 27195955 -123587598 - MER5A DNA MER1_type -57 132 34 2047 134 10 0 chr11 27196038 27196345 -123587208 - AluSg SINE Alu 0 310 1 263 130 19 0 chr11 27196865 27196919 -123586634 + GA-rich Low_complexity Low_complexity 2 56 0 467 348 12 6 chr11 27197066 27197230 -123586323 + MER5A DNA MER1_type 10 174 -15 269 330 102 30 chr11 27197355 27197552 -123586001 - MIR SINE MIR -41 221 11 600 284 12 12 chr11 27198292 27198454 -123585099 + MIR SINE MIR 7 168 -94 25 51 0 0 chr11 27198481 27198520 -123585033 + AT_rich Low_complexity Low_complexity 1 39 0 2233 113 27 43 chr11 27198886 27199256 -123584297 - THE1B LTR MaLR 0 364 1 26 50 0 0 chr11 27199298 27199338 -123584215 + AT_rich Low_complexity Low_complexity 1 40 0 543 346 69 4 chr11 27199952 27200183 -123583370 - MIR SINE MIR 0 262 17 583 302 143 24 chr11 27200406 27200784 -123582769 - L2 LINE L2 -2 3311 2889 23 33 0 0 chr11 27201026 27201056 -123582497 + AT_rich Low_complexity Low_complexity 1 30 0 59 46 0 0 chr11 27201119 27201206 -123582347 + AT_rich Low_complexity Low_complexity 1 87 0 389 261 77 68 chr11 27201416 27201623 -123581930 + L2 LINE L2 3082 3290 -23 201 74 0 0 chr11 27201631 27201658 -123581895 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 31 0 0 0 chr11 27202756 27202787 -123580766 + AT_rich Low_complexity Low_complexity 1 31 0 2525 53 0 0 chr11 27203346 27203650 -123579903 - AluY SINE Alu -7 304 1 23 54 0 0 chr11 27203713 27203750 -123579803 + AT_rich Low_complexity Low_complexity 1 37 0 735 274 61 45 chr11 27203821 27204131 -123579422 + L1MC4a LINE L1 5536 5850 -1958 780 213 105 62 chr11 27204166 27204490 -123579063 + L1MC4a LINE L1 5930 6267 -1541 21 0 0 0 chr11 27205078 27205099 -123578454 + AT_rich Low_complexity Low_complexity 1 21 0 2255 39 0 68 chr11 27205365 27205675 -123577878 - AluY SINE Alu -22 289 1 1490 166 135 0 chr11 27205821 27206080 -123577473 + AluJb SINE Alu 4 297 -15 2068 128 7 0 chr11 27206475 27206764 -123576789 + AluSq SINE Alu 1 291 -22 1900 113 0 60 chr11 27206820 27207165 -123576388 + AluSq SINE Alu 1 327 0 468 333 31 6 chr11 27207600 27207762 -123575791 + MIR3 SINE MIR 38 203 -5 200 316 26 128 chr11 27208044 27208161 -123575392 - L2 LINE L2 -31 3241 3137 325 284 52 103 chr11 27208208 27208402 -123575151 - MIR SINE MIR -8 254 71 297 287 46 76 chr11 27210574 27210811 -123572742 - MIR SINE MIR -13 249 20 7009 53 18 0 chr11 27211259 27212269 -123571284 - L1PA5 LINE L1 -8 6146 5127 2218 119 0 6 chr11 27212806 27213117 -123570436 + AluSc SINE Alu 1 309 0 246 32 0 0 chr11 27213269 27213300 -123570253 + (TATAA)n Simple_repeat Simple_repeat 2 32 0 435 356 25 6 chr11 27213638 27213801 -123569752 + MIR SINE MIR 28 193 -69 317 342 20 34 chr11 27215761 27215910 -123567643 - MIR SINE MIR -115 147 1 3053 96 46 4 chr11 27217618 27218076 -123565477 - L1PA13 LINE L1 -3 6160 5684 340 333 48 0 chr11 27218633 27218759 -123564794 - MIR SINE MIR -111 151 20 1428 316 51 8 chr11 27218878 27219368 -123564185 - LTR33 LTR ERVL -10 511 1 305 331 26 74 chr11 27219931 27220200 -123563353 + L2 LINE L2 3056 3311 -2 276 308 39 19 chr11 27220234 27220338 -123563215 - L2 LINE L2 -4 3309 3204 2174 143 41 0 chr11 27220434 27220777 -123562776 + MSTA LTR MaLR 72 428 0 32 67 0 0 chr11 27222044 27222104 -123561449 + AT_rich Low_complexity Low_complexity 1 60 0 431 263 34 51 chr11 27222127 27222302 -123561251 + MER66A LTR ERV1 298 469 -9 706 241 20 15 chr11 27222306 27222505 -123561048 - L1ME2 LINE L1 -282 5882 5683 1875 111 4 4 chr11 27223042 27223313 -123560240 + AluSc SINE Alu 39 309 0 342 91 0 0 chr11 27224624 27224679 -123558874 + (CA)n Simple_repeat Simple_repeat 1 55 0 5382 90 0 0 chr11 27224958 27225693 -123557860 - L1PA8 LINE L1 0 6172 5438 22 35 0 0 chr11 27226140 27226169 -123557384 + AT_rich Low_complexity Low_complexity 1 29 0 327 49 0 0 chr11 27226893 27226934 -123556619 + (CA)n Simple_repeat Simple_repeat 1 41 0 290 308 124 24 chr11 27227377 27227546 -123556007 - MIR SINE MIR -1 261 76 653 315 119 3 chr11 27228904 27229215 -123554338 - L3 LINE CR1 -102 1475 1129 186 287 45 104 chr11 27229371 27229573 -123553980 + L2 LINE L2 3107 3296 -17 228 366 20 10 chr11 27229636 27229737 -123553816 - L3 LINE CR1 -854 723 622 256 247 67 56 chr11 27230380 27230469 -123553084 - L2 LINE L2 -3 3310 3221 348 302 34 20 chr11 27231874 27232023 -123551530 + MIR SINE MIR 91 241 -21 230 384 20 20 chr11 27233093 27233244 -123550309 + MIR3 SINE MIR 49 199 -9 2574 69 3 3 chr11 27233276 27233624 -123549929 - L1PA13 LINE L1 0 6163 5816 1804 141 49 30 chr11 27234884 27235252 -123548301 + THE1C LTR MaLR 1 375 0 2138 192 41 3 chr11 27235674 27236064 -123547489 + MER47B DNA MER2_type 4 408 -10 259 326 30 37 chr11 27236098 27236233 -123547320 - MIR3 SINE MIR -41 167 34 266 190 0 155 chr11 27236725 27236841 -123546712 + MLT1J1 LTR MaLR 60 157 -289 250 62 62 0 chr11 27237038 27237086 -123546467 + CT-rich Low_complexity Low_complexity 1 51 0 27 0 0 0 chr11 27237199 27237226 -123546327 + AT_rich Low_complexity Low_complexity 1 27 0 1384 154 194 4 chr11 27237805 27238084 -123545469 - MER1B DNA MER1_type -3 336 5 2122 129 3 0 chr11 27238485 27238794 -123544759 - AluSg SINE Alu 0 310 1 228 411 0 0 chr11 27240399 27240550 -123543003 - MER117 DNA MER1_type -3 194 44 219 358 84 0 chr11 27241147 27241242 -123542311 + L2 LINE L2 3205 3307 -6 227 318 34 11 chr11 27241495 27241583 -123541970 - MIR SINE MIR -61 147 58 1413 230 49 11 chr11 27241655 27242020 -123541533 - MLT1B LTR MaLR -11 379 1 2348 173 14 7 chr11 27242770 27243191 -123540362 - MSTA LTR MaLR -4 424 1 5573 211 16 7 chr11 27243191 27244288 -123539265 - MSTA-int LTR MaLR 0 1651 546 441 0 0 0 chr11 27244305 27244354 -123539199 + (TA)n Simple_repeat Simple_repeat 1 49 0 7125 41 0 0 chr11 27244354 27245261 -123538292 - L1PA5 LINE L1 -7 6147 5222 2197 67 0 3 chr11 27245261 27245558 -123537995 + L1P LINE L1 4795 5090 -1056 321 98 0 20 chr11 27245556 27245607 -123537946 - MSTA-int LTR MaLR -1116 535 486 * 2021 161 19 0 chr11 27245612 27245973 -123537580 - MSTA-int LTR MaLR -1283 368 1 2136 170 16 56 chr11 27245973 27246419 -123537134 - MSTA LTR MaLR 0 428 1 215 245 11 0 chr11 27246907 27247001 -123536552 + GA-rich Low_complexity Low_complexity 1 95 0 204 97 0 0 chr11 27247015 27247046 -123536507 + (TG)n Simple_repeat Simple_repeat 1 31 0 26 50 0 0 chr11 27247223 27247263 -123536290 + AT_rich Low_complexity Low_complexity 1 40 0 205 255 0 0 chr11 27247480 27247527 -123536026 + (TG)n Simple_repeat Simple_repeat 2 48 0 281 159 0 29 chr11 27247718 27247787 -123535766 + CT-rich Low_complexity Low_complexity 3 69 0 2183 135 47 16 chr11 27248434 27248798 -123534755 + THE1C LTR MaLR 1 375 0 9001 135 36 44 chr11 27248798 27250390 -123533163 + THE1C-int LTR MaLR 1 1580 0 2519 102 19 16 chr11 27250390 27250764 -123532789 + THE1C LTR MaLR 1 375 0 315 331 75 47 chr11 27250943 27251197 -123532356 - L2 LINE L2 -1 3312 3052 2045 164 16 26 chr11 27251534 27251913 -123531640 + THE1C LTR MaLR 1 375 0 250 386 55 14 chr11 27251918 27252063 -123531490 + MIR SINE MIR 19 169 -93 26 30 0 0 chr11 27252116 27252149 -123531404 + AT_rich Low_complexity Low_complexity 1 33 0 2028 124 69 44 chr11 27253018 27253096 -123530457 - MER1A DNA MER1_type -2218 484 409 180 0 0 0 chr11 27253096 27253116 -123530437 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2010 134 0 0 chr11 27253120 27253395 -123530158 - AluSx SINE Alu -37 275 1 2028 124 69 44 chr11 27253395 27253738 -123529815 - MER1A DNA MER1_type -2295 407 5 1078 212 13 0 chr11 27255025 27255261 -123528292 - Tigger6 DNA MER2_type -1358 239 1 550 274 98 20 chr11 27255384 27256326 -123527227 + L1MEd LINE L1 532 1546 -4583 415 83 42 10 chr11 27256709 27256805 -123526748 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 750 331 48 30 chr11 27257567 27257851 -123525702 - L2 LINE L2 -461 2853 2557 1639 183 7 36 chr11 27257851 27258152 -123525401 + AluJb SINE Alu 1 292 -20 750 331 48 30 chr11 27258152 27258302 -123525251 - L2 LINE L2 -757 2557 2411 313 239 0 0 chr11 27258532 27258603 -123524950 + MIR SINE MIR 192 262 0 1582 178 128 3 chr11 27258723 27259044 -123524509 - MLT1A1 LTR MaLR -4 361 1 2297 98 0 0 chr11 27259066 27259361 -123524192 + AluSx SINE Alu 16 310 -2 230 272 248 52 chr11 27259710 27260000 -123523553 + L2 LINE L2 2967 3313 0 254 250 0 42 chr11 27260429 27260525 -123523028 + L1MC4 LINE L1 6614 6705 -1337 201 176 0 0 chr11 27260525 27260559 -123522994 + (TA)n Simple_repeat Simple_repeat 2 35 0 441 0 0 0 chr11 27260731 27260780 -123522773 + (CA)n Simple_repeat Simple_repeat 1 49 0 1066 230 85 48 chr11 27261035 27261387 -123522166 + MLT1A1 LTR MaLR 1 365 0 224 333 68 26 chr11 27261565 27261682 -123521871 - MER5A DNA MER1_type -11 178 57 423 0 0 0 chr11 27262476 27262523 -123521030 + (CA)n Simple_repeat Simple_repeat 2 48 0 1178 311 61 28 chr11 27263239 27264025 -123519528 - L2 LINE L2 0 3313 2497 783 246 34 79 chr11 27264125 27264503 -123519050 + L1MC5 LINE L1 7183 7543 -418 1980 102 7 0 chr11 27264584 27264878 -123518675 - L1PA13 LINE L1 -5 6158 5863 3477 126 42 6 chr11 27264878 27265493 -123518060 + L1PA13 LINE L1 5204 5837 -331 1510 174 0 8 chr11 27265619 27265861 -123517692 - AluSx SINE Alu -69 243 4 240 236 0 28 chr11 27266541 27266613 -123516940 + (TATATG)n Simple_repeat Simple_repeat 4 73 0 201 147 0 0 chr11 27266721 27266755 -123516798 + (TA)n Simple_repeat Simple_repeat 2 35 0 202 0 29 57 chr11 27267319 27267354 -123516199 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 232 330 9 43 chr11 27268452 27268567 -123514986 + L2 LINE L2 2945 3055 -217 27 0 0 0 chr11 27268877 27268904 -123514649 + AT_rich Low_complexity Low_complexity 1 27 0 1683 141 0 0 chr11 27269613 27269896 -123513657 + L1MA5A LINE L1 6013 6295 -2 6893 60 12 0 chr11 27270504 27271833 -123511720 - L1PA7 LINE L1 -3 6151 4820 3402 99 0 4 chr11 27271834 27272337 -123511216 + L1PA7 LINE L1 4308 4808 -1338 2224 113 7 0 chr11 27272581 27272891 -123510662 + AluSq SINE Alu 1 312 -1 186 316 18 18 chr11 27274344 27274401 -123509152 - L3b LINE CR1 -5 1578 1522 266 268 186 0 chr11 27274542 27274639 -123508914 - MIR SINE MIR -102 160 46 25 0 0 0 chr11 27275192 27275217 -123508336 + AT_rich Low_complexity Low_complexity 1 25 0 1769 188 54 47 chr11 27275979 27276404 -123507149 + MSTC LTR MaLR 1 428 0 22 0 0 0 chr11 27277561 27277583 -123505970 + AT_rich Low_complexity Low_complexity 1 22 0 222 91 0 0 chr11 27277997 27278030 -123505523 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 581 238 81 23 chr11 27278064 27278236 -123505317 - MIR SINE MIR -80 182 1 390 293 43 21 chr11 27278769 27278957 -123504596 + MIR SINE MIR 71 262 0 22 0 0 0 chr11 27279133 27279155 -123504398 + AT_rich Low_complexity Low_complexity 1 22 0 256 232 30 36 chr11 27279288 27279456 -123504097 + A-rich Low_complexity Low_complexity 6 172 0 549 296 72 45 chr11 27279614 27280131 -123503422 + L1MEd LINE L1 564 1094 -5025 915 130 0 0 chr11 27280185 27280316 -123503237 + AluSg SINE Alu 1 131 -179 207 69 0 0 chr11 27280353 27280382 -123503171 + (TC)n Simple_repeat Simple_repeat 2 30 0 2356 245 138 42 chr11 27280414 27281552 -123502001 - L1MC4 LINE L1 -144 7898 6652 303 28 0 0 chr11 27281605 27281641 -123501912 + (TG)n Simple_repeat Simple_repeat 1 36 0 1483 213 33 53 chr11 27281683 27282146 -123501407 + MLT1D LTR MaLR 6 505 0 380 283 0 0 chr11 27282167 27282273 -123501280 - L1MC4 LINE L1 -1477 6565 6460 444 321 30 46 chr11 27282660 27282922 -123500631 - L2 LINE L2 -628 2686 2429 256 275 117 59 chr11 27282926 27283148 -123500405 - HAL1 LINE L1 -2125 382 148 21 0 0 0 chr11 27283206 27283227 -123500326 + AT_rich Low_complexity Low_complexity 1 21 0 2326 96 0 13 chr11 27283257 27283571 -123499982 + AluSg SINE Alu 1 310 0 191 260 0 0 chr11 27283585 27283635 -123499918 + MIR SINE MIR 213 262 0 663 108 0 0 chr11 27283778 27283880 -123499673 + (TCTA)n Simple_repeat Simple_repeat 2 103 0 6586 73 31 1 chr11 27284252 27285123 -123498430 - MER11D LTR ERVK 0 897 1 456 254 0 33 chr11 27285123 27285245 -123498308 - MER94 DNA DNA -16 118 1 7177 44 7 0 chr11 27285431 27286397 -123497156 + L1PA7 LINE L1 5178 6149 -5 234 328 60 45 chr11 27286417 27286551 -123497002 - MIR3 SINE MIR -63 145 10 1572 192 36 0 chr11 27287119 27287278 -123496275 - AluJb SINE Alu -21 291 116 255 61 0 0 chr11 27287278 27287311 -123496242 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1572 192 36 0 chr11 27287311 27287432 -123496121 - AluJb SINE Alu -196 116 1 29 94 0 0 chr11 27287908 27287993 -123495560 + AT_rich Low_complexity Low_complexity 1 85 0 1326 278 152 35 chr11 27287993 27288539 -123495014 - MLT2E LTR ERVL -8 620 11 388 328 66 22 chr11 27288699 27289084 -123494469 - L1M4 LINE L1 -3602 2544 2125 238 293 104 0 chr11 27289768 27289874 -123493679 - HAL1 LINE L1 -909 1598 1482 3428 173 128 98 chr11 27290339 27290910 -123492643 - L1MC3 LINE L1 0 7785 7232 283 304 22 0 chr11 27290910 27291002 -123492551 - MLT1F1 LTR MaLR -436 131 38 3428 173 128 98 chr11 27291002 27291427 -123492126 - L1MC3 LINE L1 -553 7232 6666 2738 251 95 19 chr11 27291823 27292726 -123490827 + L1M4 LINE L1 16 987 -5555 921 201 33 16 chr11 27292730 27292914 -123490639 - MLT2D LTR ERVL 0 414 228 417 276 29 53 chr11 27292925 27293134 -123490419 + ERVL LTR ERVL 193 376 -5278 356 321 33 27 chr11 27293979 27294163 -123489390 - MIR3 SINE MIR -14 194 10 349 191 96 32 chr11 27294332 27294426 -123489127 + MER94 DNA DNA 1 100 -34 209 266 13 51 chr11 27295290 27295369 -123488184 - L2 LINE L2 -3 3310 3235 667 159 56 0 chr11 27295823 27295949 -123487604 - L1MA10 LINE L1 -3 6331 6199 297 0 0 0 chr11 27297429 27297462 -123486091 + (CA)n Simple_repeat Simple_repeat 2 34 0 180 0 0 0 chr11 27297461 27297481 -123486072 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 1303 49 12 0 chr11 27297946 27298108 -123485445 - AluY SINE Alu -12 299 136 201 289 19 0 chr11 27298422 27298474 -123485079 + MIR SINE MIR 90 142 -66 236 250 0 0 chr11 27298637 27298689 -123484864 + MLT1H1 LTR MaLR 1 52 -503 349 223 93 45 chr11 27298711 27298878 -123484675 + MLT1G LTR MaLR 357 590 0 1567 77 64 4 chr11 27299242 27299476 -123484077 + L1PA11 LINE L1 5917 6164 -10 24 0 0 0 chr11 27299477 27299501 -123484052 + AT_rich Low_complexity Low_complexity 1 24 0 259 315 41 6 chr11 27299522 27299684 -123483869 + MIR SINE MIR 82 192 -17 25 0 0 0 chr11 27300576 27300601 -123482952 + AT_rich Low_complexity Low_complexity 1 25 0 2399 71 0 3 chr11 27301417 27301714 -123481839 - AluY SINE Alu -15 296 1 201 373 59 0 chr11 27301730 27301832 -123481721 + L3 LINE CR1 1452 1559 -18 213 340 82 0 chr11 27302650 27302747 -123480806 + MIR SINE MIR 47 151 -111 190 224 52 35 chr11 27303380 27303438 -123480115 + MIR SINE MIR 201 259 -3 1930 114 4 0 chr11 27305820 27306082 -123477471 + AluSx SINE Alu 35 297 -15 196 240 331 0 chr11 27306118 27306239 -123477314 + MIR SINE MIR 20 180 -82 5816 76 64 5 chr11 27306311 27307091 -123476462 + LTR12 LTR ERV1 1 826 0 315 335 53 29 chr11 27307113 27307283 -123476270 - MIR SINE MIR -61 201 28 2305 76 10 3 chr11 27307285 27307587 -123475966 - AluSq SINE Alu -9 304 1 325 147 53 40 chr11 27308320 27308395 -123475158 + MADE1 DNA Mariner 5 80 0 411 241 33 50 chr11 27308595 27308747 -123474806 + MER5A DNA MER1_type 29 177 -1 235 213 28 28 chr11 27309173 27309281 -123474272 + CT-rich Low_complexity Low_complexity 4 111 0 1915 219 85 43 chr11 27309697 27310227 -123473326 - MLT2B3 LTR ERVL 0 554 3 223 299 26 0 chr11 27310229 27310306 -123473247 - MIR SINE MIR -126 136 58 1089 193 43 128 chr11 27310396 27310795 -123472758 + MLT1A1 LTR MaLR 1 365 0 2134 159 56 5 chr11 27310973 27311387 -123472166 - L1MA9 LINE L1 -1 6311 5877 1467 174 32 11 chr11 27311397 27311679 -123471874 - L1MA9 LINE L1 -525 5787 5500 202 325 40 66 chr11 27311797 27311948 -123471605 + MIR SINE MIR 6 152 -110 2358 62 3 3 chr11 27312501 27312793 -123470760 - AluY SINE Alu -15 296 5 831 172 8 0 chr11 27313435 27313593 -123469960 + AluSg/x SINE Alu 147 305 0 454 309 111 14 chr11 27313788 27313995 -123469558 - MIR SINE MIR -25 237 11 405 352 77 0 chr11 27314035 27314217 -123469336 - MIR SINE MIR -18 244 49 292 297 27 0 chr11 27314685 27314759 -123468794 - L2 LINE L2 -9 3304 3229 348 333 103 23 chr11 27315125 27315299 -123468254 + MIR SINE MIR 53 240 -22 205 300 200 18 chr11 27316721 27316831 -123466722 - L2 LINE L2 0 3272 3143 2566 52 0 0 chr11 27317556 27317866 -123465687 - AluY SINE Alu -1 310 1 221 269 0 30 chr11 27318043 27318110 -123465443 + GA-rich Low_complexity Low_complexity 1 65 0 399 329 98 31 chr11 27318735 27319021 -123464532 - HAL1b LINE L1 -793 555 251 31 44 0 0 chr11 27319410 27319455 -123464098 + AT_rich Low_complexity Low_complexity 1 45 0 1651 170 25 0 chr11 27319593 27319870 -123463683 - MER57A LTR ERV1 -119 284 1 39 0 0 0 chr11 27320381 27320420 -123463133 + AT_rich Low_complexity Low_complexity 1 39 0 2983 142 43 6 chr11 27320917 27321409 -123462144 - MER41E LTR ERV1 -2 510 1 487 258 16 11 chr11 27371501 27371683 -123411870 + HERV17 LTR ERV1 1180 1362 -7264 252 0 0 0 chr11 27371849 27371877 -123411676 + (A)n Simple_repeat Simple_repeat 1 28 0 17013 60 3 0 chr11 27371882 27374088 -123409465 + HERV17 LTR ERV1 1543 3754 -4872 13580 60 0 1 chr11 27374067 27375812 -123407741 + HERV17 LTR ERV1 5405 7147 -1479 * 304 26 0 0 chr11 27375808 27375847 -123407706 + HERV17 LTR ERV1 7510 7548 -1078 * 2235 39 0 4 chr11 27375837 27376117 -123407436 + HERV17 LTR ERV1 8335 8613 -13 257 268 116 63 chr11 27376117 27376130 -123407423 + MIR SINE MIR 34 45 -217 5291 109 14 9 chr11 27376130 27376906 -123406647 + LTR17 LTR ERV1 1 780 0 257 268 116 63 chr11 27376906 27377104 -123406449 + MIR SINE MIR 45 256 -6 1122 174 65 140 chr11 27377413 27377906 -123405647 + L1MB7 LINE L1 5729 6184 0 358 258 58 26 chr11 27379125 27379280 -123404273 + L1ME2 LINE L1 5995 6154 -10 22 0 0 0 chr11 27379288 27379310 -123404243 + AT_rich Low_complexity Low_complexity 1 22 0 1757 154 68 0 chr11 27379379 27379659 -123403894 - AluSx SINE Alu -13 299 1 2457 65 7 3 chr11 27380533 27380843 -123402710 + AluY SINE Alu 1 311 0 265 130 0 0 chr11 27380948 27380994 -123402559 + AluSc SINE Alu 252 297 -2 616 254 8 0 chr11 27381104 27381230 -123402323 + MER5B DNA MER1_type 43 169 -9 339 275 144 25 chr11 27381506 27381643 -123401910 - MIR SINE MIR -61 147 17 221 278 42 14 chr11 27382287 27382359 -123401194 - L2 LINE L2 -2933 381 308 199 308 19 67 chr11 27382532 27382636 -123400917 - MIR3 SINE MIR -7 201 103 204 245 0 38 chr11 27382750 27382803 -123400750 + L2 LINE L2 3222 3272 0 1980 100 4 0 chr11 27382908 27383202 -123400351 + AluSx SINE Alu 21 315 0 209 272 105 78 chr11 27384422 27384613 -123398940 + L2 LINE L2 3118 3313 0 266 219 62 21 chr11 27384615 27384711 -123398842 - L1ME4a LINE L1 -58 6063 5964 2336 110 3 0 chr11 27385623 27385932 -123397621 - AluSx SINE Alu -2 310 1 321 287 73 40 chr11 27386062 27386212 -123397341 - MIR SINE MIR -6 256 102 897 315 75 71 chr11 27386892 27387372 -123396181 + MER69 DNA AcHobo 2010 2491 -35 230 342 18 9 chr11 27387408 27387519 -123396034 - MIR SINE MIR -30 232 121 2821 306 151 23 chr11 27388578 27389768 -123393785 + L2 LINE L2 7 1407 -1907 2076 109 22 22 chr11 27389768 27390081 -123393472 - AluSq SINE Alu 0 313 1 2821 306 151 23 chr11 27390081 27390303 -123393250 + L2 LINE L2 1407 1599 -1715 776 272 32 51 chr11 27390496 27390812 -123392741 - L2 LINE L2 0 3313 3004 180 174 0 65 chr11 27390821 27390867 -123392686 - L2 LINE L2 0 3313 3271 340 347 55 15 chr11 27390991 27391241 -123392312 - MIR SINE MIR -1 261 4 954 246 199 21 chr11 27391651 27392089 -123391464 - Charlie2 DNA MER1_type 0 2862 2503 24 67 0 0 chr11 27392089 27392134 -123391419 + AT_rich Low_complexity Low_complexity 1 45 0 954 246 199 21 chr11 27392134 27392419 -123391134 - Charlie2 DNA MER1_type -359 2503 1958 195 186 0 0 chr11 27392436 27392479 -123391074 + (TATG)n Simple_repeat Simple_repeat 2 44 0 185 105 0 26 chr11 27395347 27395385 -123388168 + (TC)n Simple_repeat Simple_repeat 2 38 0 26 74 0 0 chr11 27397188 27397242 -123386311 + AT_rich Low_complexity Low_complexity 1 54 0 491 236 35 80 chr11 27398966 27399165 -123384388 + MIR SINE MIR 22 211 -51 875 260 143 29 chr11 27399244 27399657 -123383896 - L1ME3A LINE L1 -32 6138 5677 469 238 92 37 chr11 27400177 27400341 -123383212 + MIR SINE MIR 34 206 -56 355 256 0 0 chr11 27402579 27402661 -123380892 + L1MC4 LINE L1 6614 6695 -1347 313 333 0 0 chr11 27402589 27402679 -123380874 - L1MC4 LINE L1 -1339 6703 6614 * 333 0 0 0 chr11 27403931 27403968 -123379585 + (CA)n Simple_repeat Simple_repeat 2 38 0 26 30 0 0 chr11 27404056 27404089 -123379464 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr11 27405719 27405749 -123377804 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr11 27406023 27406044 -123377509 + AT_rich Low_complexity Low_complexity 1 21 0 360 0 0 0 chr11 27407487 27407527 -123376026 + (TG)n Simple_repeat Simple_repeat 2 41 0 24 53 0 0 chr11 27409792 27409830 -123373723 + AT_rich Low_complexity Low_complexity 1 38 0 2469 57 0 0 chr11 27409885 27410183 -123373370 - AluY SINE Alu -13 298 1 504 269 67 13 chr11 27410722 27410871 -123372682 + MER5A DNA MER1_type 12 168 -21 760 272 42 8 chr11 27412377 27412616 -123370937 + L1MEc LINE L1 35 281 -6115 2036 258 42 23 chr11 27412734 27413429 -123370124 + L1ME1 LINE L1 5455 6162 -4 715 277 6 0 chr11 27413462 27413621 -123369932 - MER5B DNA MER1_type 0 178 19 277 333 93 22 chr11 27415199 27415382 -123368171 - MIR SINE MIR -56 206 11 3925 169 30 8 chr11 27416370 27417116 -123366437 + L1MB1 LINE L1 5405 6166 -2 40 87 0 0 chr11 27417119 27417222 -123366331 + AT_rich Low_complexity Low_complexity 1 103 0 219 274 84 32 chr11 27417255 27417350 -123366203 + MIR SINE MIR 49 148 -114 232 146 56 0 chr11 27419825 27419914 -123363639 + (TA)n Simple_repeat Simple_repeat 1 94 0 1685 106 0 4 chr11 27419916 27420143 -123363410 - AluSg/x SINE Alu -17 295 70 2059 117 0 39 chr11 27420237 27420545 -123363008 - AluSx SINE Alu -14 298 3 229 301 60 8 chr11 27420584 27420717 -123362836 - L1M4 LINE L1 -3630 2516 2377 23 33 0 0 chr11 27421037 27421067 -123362486 + AT_rich Low_complexity Low_complexity 1 30 0 321 347 116 14 chr11 27421102 27421448 -123362105 + L1 LINE L1 3094 3474 -2672 2212 105 3 0 chr11 27422514 27422810 -123360743 + AluSp SINE Alu 1 297 -16 207 0 0 0 chr11 27423024 27423047 -123360506 + (TAGA)n Simple_repeat Simple_repeat 1 23 0 182 138 0 0 chr11 27423449 27423478 -123360075 + L3 LINE CR1 1454 1482 -95 406 300 93 0 chr11 27423654 27423794 -123359759 + MLT1H1 LTR MaLR 403 555 0 369 0 0 0 chr11 27424588 27424629 -123358924 + (CA)n Simple_repeat Simple_repeat 1 41 0 247 280 65 11 chr11 27424989 27425082 -123358471 - MIR SINE MIR -53 209 112 247 189 14 14 chr11 27425086 27425160 -123358393 + GA-rich Low_complexity Low_complexity 5 78 0 292 336 8 52 chr11 27425329 27425463 -123358090 - MIR SINE MIR -133 129 2 481 289 102 16 chr11 27425470 27425785 -123357768 + HAL1 LINE L1 995 1336 -1171 484 288 78 79 chr11 27425795 27426190 -123357363 + LTR16B LTR ERVL 12 441 -9 2104 247 91 76 chr11 27426201 27427219 -123356334 + HAL1 LINE L1 1334 2372 -135 2226 82 0 13 chr11 27427219 27427522 -123356031 + AluY SINE Alu 1 299 -12 2104 247 91 76 chr11 27427522 27427659 -123355894 + HAL1 LINE L1 2372 2506 -1 212 244 23 47 chr11 27428137 27428223 -123355330 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 262 299 155 10 chr11 27428246 27428343 -123355210 - MIR SINE MIR -103 159 49 2434 59 7 0 chr11 27428358 27428665 -123354888 + AluY SINE Alu 1 309 -2 28 0 0 0 chr11 27428665 27428693 -123354860 + AT_rich Low_complexity Low_complexity 1 28 0 195 297 0 68 chr11 27429488 27429562 -123353991 - L2 LINE L2 0 3313 3245 484 268 109 33 chr11 27429599 27429782 -123353771 - MIR SINE MIR -32 230 34 1268 206 48 38 chr11 27429825 27430117 -123353436 - AluJb SINE Alu -17 295 1 785 321 41 57 chr11 27430654 27431220 -123352333 - L2 LINE L2 0 3313 2758 29 73 0 12 chr11 27431901 27431934 -123351619 + AT_rich Low_complexity Low_complexity 1 33 -48 209 95 0 24 chr11 27431934 27431976 -123351577 + (TTTAA)n Simple_repeat Simple_repeat 5 45 0 29 73 0 12 chr11 27431976 27432024 -123351529 + AT_rich Low_complexity Low_complexity 33 81 0 21 36 0 0 chr11 27432226 27432254 -123351299 + AT_rich Low_complexity Low_complexity 1 28 0 1941 138 30 3 chr11 27432677 27432981 -123350572 + AluSx SINE Alu 1 312 0 24 32 0 0 chr11 27433308 27433339 -123350214 + AT_rich Low_complexity Low_complexity 1 31 0 340 389 39 56 chr11 27433554 27434173 -123349380 - L2 LINE L2 -221 3051 2442 2295 105 0 0 chr11 27435372 27435678 -123347875 + AluSg SINE Alu 1 306 -4 432 134 0 0 chr11 27436075 27436142 -123347411 + MADE1 DNA Mariner 13 79 -1 286 306 134 25 chr11 27436836 27436993 -123346560 - MIR SINE MIR -69 193 20 189 0 0 0 chr11 27437027 27437048 -123346505 + (TA)n Simple_repeat Simple_repeat 2 22 0 1317 325 63 25 chr11 27437455 27438086 -123345467 + L1MA6 LINE L1 399 1433 -6133 5431 238 38 13 chr11 27438613 27441684 -123341869 + L1MA6 LINE L1 2097 4949 -2616 2638 156 46 42 chr11 27441682 27442232 -123341321 + L1MA6 LINE L1 6341 6905 -814 * 2277 91 3 0 chr11 27442232 27442529 -123341024 + AluSp SINE Alu 1 298 -15 2638 156 46 42 chr11 27442529 27442828 -123340725 + L1MA6 LINE L1 6905 7201 -518 473 120 0 43 chr11 27442828 27442920 -123340633 + L1P3 LINE L1 1 88 -5787 20480 145 36 51 chr11 27443120 27448294 -123335259 + L1P3 LINE L1 72 5228 -1233 1357 185 45 6 chr11 27448315 27448628 -123334925 + L1MA6 LINE L1 7394 7718 -1 421 318 76 38 chr11 27448830 27449041 -123334512 - L1ME4a LINE L1 -269 5852 5634 26 30 0 0 chr11 27449359 27449392 -123334161 + AT_rich Low_complexity Low_complexity 1 33 0 507 168 1 65 chr11 27449560 27449681 -123333872 + L1MA6 LINE L1 5966 6091 -209 1373 180 25 101 chr11 27449682 27449998 -123333555 - AluJo SINE Alu -20 292 1 299 296 24 64 chr11 27450733 27450858 -123332695 - MER91B DNA MER1_type -60 130 11 282 296 80 11 chr11 27451307 27451395 -123332158 + MIR SINE MIR 95 188 -74 579 219 10 20 chr11 27451771 27452041 -123331512 + GA-rich Low_complexity Low_complexity 1 267 0 1035 111 11 11 chr11 27452043 27452223 -123331330 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 40 21 0 0 chr11 27454168 27454215 -123329338 + AT_rich Low_complexity Low_complexity 1 47 0 3848 93 4 4 chr11 27454777 27455302 -123328251 + LTR17 LTR ERV1 256 780 0 5013 72 10 22 chr11 27455324 27455995 -123327558 + HERV17 LTR ERV1 22 684 -7942 6115 76 12 39 chr11 27456162 27457057 -123326496 + HERV17 LTR ERV1 732 1602 -7024 287 338 230 0 chr11 27457449 27457597 -123325956 - MER91A DNA MER1_type 0 196 15 22 35 0 0 chr11 27459651 27459680 -123323873 + AT_rich Low_complexity Low_complexity 1 29 0 1993 149 31 23 chr11 27459827 27460216 -123323337 - L1MA8 LINE L1 -18 6273 5882 204 40 0 0 chr11 27460246 27460271 -123323282 + (TG)n Simple_repeat Simple_repeat 2 26 0 626 189 0 0 chr11 27460286 27460397 -123323156 + L1MA8 LINE L1 5782 5892 -399 3632 67 0 0 chr11 27460623 27461086 -123322467 + L1PA5 LINE L1 5692 6154 0 1095 288 41 29 chr11 27461100 27461614 -123321939 + LTR33 LTR ERVL 2 521 0 22 35 0 0 chr11 27461653 27461682 -123321871 + AT_rich Low_complexity Low_complexity 1 29 0 234 322 55 60 chr11 27461934 27462117 -123321436 + LTR33A LTR ERVL 4 185 -338 587 292 43 5 chr11 27462183 27462392 -123321161 + LTR33A LTR ERVL 302 518 -5 22 56 0 0 chr11 27462788 27462824 -123320729 + AT_rich Low_complexity Low_complexity 1 36 0 6890 61 39 0 chr11 27463093 27464122 -123319431 - L1PA7 LINE L1 -6 6148 5108 1291 79 0 0 chr11 27464122 27464299 -123319254 - L1PA7 LINE L1 -2167 3979 3803 384 296 89 22 chr11 27464647 27464782 -123318771 + MIR SINE MIR 114 257 -5 369 0 0 0 chr11 27465370 27465411 -123318142 + (TG)n Simple_repeat Simple_repeat 2 42 0 391 284 142 17 chr11 27465995 27466171 -123317382 + MIR SINE MIR 65 262 0 553 282 39 0 chr11 27466253 27466409 -123317144 + MIR SINE MIR 101 262 0 23 0 0 0 chr11 27467520 27467543 -123316010 + AT_rich Low_complexity Low_complexity 1 23 0 333 208 0 0 chr11 27467841 27467913 -123315640 + L1ME4a LINE L1 5794 5865 -256 230 270 14 0 chr11 27467958 27468032 -123315521 + (TA)n Simple_repeat Simple_repeat 2 76 0 2127 129 7 0 chr11 27468202 27468505 -123315048 - AluSx SINE Alu -7 305 1 21 0 0 0 chr11 27468596 27468617 -123314936 + AT_rich Low_complexity Low_complexity 1 21 0 2401 87 0 3 chr11 27468660 27468971 -123314582 + AluY SINE Alu 1 310 -1 302 289 49 14 chr11 27469243 27469385 -123314168 - L1ME4a LINE L1 -23 6098 5952 364 324 67 0 chr11 27469554 27469807 -123313746 - L1ME4a LINE L1 -294 5827 5558 351 64 0 0 chr11 27471131 27471178 -123312375 - MADE1 DNA Mariner 0 80 34 640 349 50 17 chr11 27471583 27472130 -123311423 - L2 LINE L2 -82 3231 2671 212 364 15 0 chr11 27472544 27472610 -123310943 + L2 LINE L2 3119 3185 -87 30 69 0 0 chr11 27472791 27472849 -123310704 + AT_rich Low_complexity Low_complexity 1 58 0 2162 98 6 31 chr11 27473645 27473962 -123309591 - AluSc SINE Alu 0 309 1 526 28 28 0 chr11 27474026 27474098 -123309455 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 324 339 69 15 chr11 27474206 27474336 -123309217 + MIR SINE MIR 14 150 -112 344 277 32 11 chr11 27474484 27474578 -123308975 - MER5A DNA MER1_type -85 104 9 388 114 32 24 chr11 27475066 27475189 -123308364 + (TATAA)n Simple_repeat Simple_repeat 1 124 0 220 348 80 9 chr11 27475521 27475633 -123307920 + MIR SINE MIR 21 140 -68 305 333 9 27 chr11 27478157 27478268 -123305285 + MIR3 SINE MIR 87 195 -13 222 156 0 0 chr11 27478979 27479024 -123304529 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 283 380 48 83 chr11 27479025 27479444 -123304109 - L2 LINE L2 0 3272 2869 2032 196 103 12 chr11 27480592 27480987 -123302566 + MER67C LTR ERV1 2 501 -209 1745 142 91 28 chr11 27480987 27481340 -123302213 + THE1C LTR MaLR 1 375 0 2032 196 103 12 chr11 27481340 27481565 -123301988 + MER67C LTR ERV1 501 704 -6 213 39 0 0 chr11 27482060 27482086 -123301467 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2449 45 0 0 chr11 27482088 27482377 -123301176 - AluY SINE Alu -22 289 1 22 0 0 0 chr11 27482979 27483001 -123300552 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr11 27483034 27483061 -123300492 + AT_rich Low_complexity Low_complexity 1 27 0 28 48 0 0 chr11 27483378 27483420 -123300133 + AT_rich Low_complexity Low_complexity 1 42 0 446 323 12 12 chr11 27483434 27483598 -123299955 + MER5B DNA MER1_type 14 177 -1 21 0 0 0 chr11 27483731 27483752 -123299801 + AT_rich Low_complexity Low_complexity 1 21 0 1123 216 150 13 chr11 27484518 27484824 -123298729 + MLT1A1 LTR MaLR 18 365 0 34 0 0 0 chr11 27485501 27485535 -123298018 + AT_rich Low_complexity Low_complexity 1 34 0 23 54 0 0 chr11 27485631 27485668 -123297885 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr11 27486183 27486218 -123297335 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr11 27488611 27488655 -123294898 + AT_rich Low_complexity Low_complexity 1 44 0 259 184 83 64 chr11 27488883 27488992 -123294561 + MER103 DNA DNA 53 163 -3 573 290 92 18 chr11 27489700 27489917 -123293636 + MIR SINE MIR 20 252 -10 821 360 80 0 chr11 27490815 27491176 -123292377 + L2 LINE L2 2516 2905 -409 384 284 73 0 chr11 27491245 27491354 -123292199 + L2 LINE L2 3197 3313 0 316 375 67 13 chr11 27492148 27492372 -123291181 + L2 LINE L2 2615 2850 -464 385 222 79 56 chr11 27492388 27492514 -123291039 - MER5B DNA MER1_type -46 132 4 261 328 42 25 chr11 27493564 27493683 -123289870 + L2 LINE L2 3133 3253 -19 2100 110 27 0 chr11 27494130 27494422 -123289131 - AluSc SINE Alu -9 300 1 2072 130 10 0 chr11 27494672 27494971 -123288582 + AluSx SINE Alu 2 303 -9 216 212 0 0 chr11 27495161 27495227 -123288326 + (TA)n Simple_repeat Simple_repeat 2 67 0 23 54 0 0 chr11 27495243 27495280 -123288273 + AT_rich Low_complexity Low_complexity 1 37 0 1459 277 39 9 chr11 27496661 27497123 -123286430 + MER110 LTR ERV1 1 476 -15 242 247 173 12 chr11 27497133 27497214 -123286339 - MIR SINE MIR -158 104 11 415 327 168 9 chr11 27497792 27498012 -123285541 - MIR SINE MIR 0 262 8 241 296 34 11 chr11 27498178 27498266 -123285287 + L2 LINE L2 1851 1940 -1374 1053 47 0 0 chr11 27498266 27498393 -123285160 - AluY SINE Alu -5 306 180 962 175 33 42 chr11 27498398 27498638 -123284915 + MSTA-int LTR MaLR 1343 1580 0 1633 183 126 23 chr11 27498638 27499026 -123284527 + MSTA LTR MaLR 1 428 0 576 102 31 10 chr11 27499027 27499125 -123284428 - L1M LINE L1 -889 5414 5315 * 1249 195 49 3 chr11 27499123 27499431 -123284122 + L1M LINE L1 4982 5303 -843 24 0 0 0 chr11 27499482 27499506 -123284047 + AT_rich Low_complexity Low_complexity 1 24 0 2290 111 3 0 chr11 27499509 27499807 -123283746 + AluSg SINE Alu 1 299 -11 2569 102 8 0 chr11 27500531 27500883 -123282670 + THE1A LTR MaLR 1 355 0 8732 114 12 16 chr11 27500883 27501313 -123282240 + THE1A-int LTR MaLR 1 431 -1149 2152 117 0 0 chr11 27501313 27501624 -123281929 + AluSc SINE Alu 1 311 0 8732 114 12 16 chr11 27501624 27501827 -123281726 + THE1A-int LTR MaLR 431 633 -947 5212 82 4 11 chr11 27501827 27502520 -123281033 - LTR12 LTR ERV1 0 688 1 8732 114 12 16 chr11 27502520 27503177 -123280376 + THE1A-int LTR MaLR 633 1289 -291 7128 232 64 36 chr11 27503318 27505785 -123277768 - L1PA12 LINE L1 -4269 3315 1 716 160 56 0 chr11 27505784 27505909 -123277644 - L1PA16 LINE L1 -126 6040 5909 * 421 314 114 33 chr11 27505962 27506261 -123277292 + L1M4 LINE L1 3728 4050 -2096 531 277 31 6 chr11 27506386 27506545 -123277008 + L1M4 LINE L1 5103 5265 -881 * 2695 209 25 32 chr11 27506523 27506589 -123276964 + L1MB7 LINE L1 4551 4616 -1530 1596 136 21 100 chr11 27506589 27506919 -123276634 + AluYb8 SINE Alu 1 304 -14 2695 209 25 32 chr11 27506919 27507533 -123276020 + L1MB7 LINE L1 4616 5226 -920 1006 216 33 16 chr11 27507527 27507772 -123275781 + L1MB7 LINE L1 5936 6184 0 * 27 49 0 0 chr11 27507988 27508029 -123275524 + AT_rich Low_complexity Low_complexity 1 41 0 329 156 36 1 chr11 27508378 27508467 -123275086 - MSTB2 LTR MaLR -3 433 294 944 284 64 60 chr11 27508512 27509026 -123274527 - L2 LINE L2 -2641 673 158 2816 13 0 0 chr11 27509231 27509541 -123274012 - AluYa5 SINE Alu -1 310 1 2190 114 3 0 chr11 27510889 27511188 -123272365 - AluSg SINE Alu -10 300 1 2108 115 7 7 chr11 27511444 27511739 -123271814 + AluSx SINE Alu 1 295 -17 840 332 65 14 chr11 27512342 27512755 -123270798 + L2 LINE L2 2511 2944 -370 339 281 171 12 chr11 27512807 27512971 -123270582 + L2 LINE L2 3116 3305 -8 336 48 0 0 chr11 27512999 27513038 -123270515 + (CA)n Simple_repeat Simple_repeat 1 81 0 336 48 0 0 chr11 27513038 27513080 -123270473 + (CA)n Simple_repeat Simple_repeat 1 42 0 2192 96 7 13 chr11 27513304 27513606 -123269947 - AluSq SINE Alu -13 300 1 274 318 113 26 chr11 27514091 27514242 -123269311 + MIR SINE MIR 5 168 -94 43695 39 4 1 chr11 27514646 27520781 -123262772 + L1PA3 LINE L1 2 6155 0 375 67 0 17 chr11 27520790 27520850 -123262703 + L1PA6 LINE L1 6094 6152 -2 306 271 88 35 chr11 27522232 27522402 -123261151 - L2 LINE L2 0 3313 3135 673 332 126 11 chr11 27522457 27522920 -123260633 - L2 LINE L2 -164 3149 2625 394 250 23 0 chr11 27523032 27523120 -123260433 - L2 LINE L2 -2 3311 3222 180 176 0 0 chr11 27523138 27523172 -123260381 + (CATA)n Simple_repeat Simple_repeat 3 36 0 443 237 59 0 chr11 27523303 27523421 -123260132 - L2 LINE L2 -789 2525 2401 564 204 0 26 chr11 27523547 27523660 -123259893 - MSTB LTR MaLR -316 110 1 549 179 7 11 chr11 27523810 27523927 -123259626 - L1PA15 LINE L1 0 6166 6047 366 80 0 0 chr11 27523986 27524036 -123259517 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 198 118 0 0 chr11 27524620 27524654 -123258899 + (CAGAGA)n Simple_repeat Simple_repeat 2 35 0 378 320 152 26 chr11 27524886 27525195 -123258358 + L2 LINE L2 2962 3309 -4 395 338 57 22 chr11 27525240 27525468 -123258085 + MIR SINE MIR 23 258 -4 320 351 135 10 chr11 27526979 27527187 -123256366 + MIR SINE MIR 3 236 -26 399 21 0 0 chr11 27528672 27528720 -123254833 + (TG)n Simple_repeat Simple_repeat 1 48 0 459 0 0 0 chr11 27528822 27528873 -123254680 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 1150 262 150 28 chr11 27529881 27530308 -123253245 + MLT1H LTR MaLR 1 479 -70 3666 119 41 10 chr11 27530708 27531322 -123252231 - L1MA3 LINE L1 -2 6303 5671 322 350 103 58 chr11 27533521 27533672 -123249881 + L1ME4a LINE L1 5520 5663 -458 1643 161 6 59 chr11 27533672 27533994 -123249559 + AluJb SINE Alu 3 307 -5 322 350 103 58 chr11 27533994 27534328 -123249225 + L1ME4a LINE L1 5663 6027 -94 276 284 68 23 chr11 27534395 27534483 -123249070 - MIR SINE MIR -169 93 2 439 253 86 48 chr11 27534559 27534745 -123248808 - MIR SINE MIR -8 254 62 492 279 112 0 chr11 27535930 27536091 -123247462 - MIR SINE MIR -82 180 2 31 88 0 0 chr11 27537976 27538056 -123245497 + AT_rich Low_complexity Low_complexity 1 80 0 33 0 0 0 chr11 27539290 27539323 -123244230 + AT_rich Low_complexity Low_complexity 1 33 0 754 200 32 26 chr11 27539456 27539641 -123243912 - MER5A DNA MER1_type 0 178 1 480 358 89 36 chr11 27539680 27540094 -123243459 - L2 LINE L2 -25 3247 2812 393 22 0 0 chr11 27540443 27540489 -123243064 + (TG)n Simple_repeat Simple_repeat 1 46 0 180 0 0 0 chr11 27540488 27540508 -123243045 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 250 398 65 57 chr11 27540895 27541264 -123242289 + L2 LINE L2 2900 3271 -1 381 298 84 47 chr11 27541373 27541588 -123241965 + L1ME LINE L1 5597 5819 -302 376 300 26 24 chr11 27542312 27542567 -123240986 + MER93a LTR ERV1 140 395 -8 256 235 0 0 chr11 27542796 27542847 -123240706 + MLT1K LTR MaLR 538 588 0 2402 105 34 0 chr11 27542911 27543263 -123240290 - THE1B LTR MaLR 0 364 1 1889 142 21 0 chr11 27544087 27544368 -123239185 + AluSx SINE Alu 1 287 -25 225 0 0 0 chr11 27544372 27544397 -123239156 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 728 281 8 54 chr11 27544423 27544665 -123238888 + MIR SINE MIR 18 248 -14 272 255 29 49 chr11 27544672 27544774 -123238779 - MIR SINE MIR -114 148 49 1509 199 3 22 chr11 27545435 27545751 -123237802 - AluJo SINE Alu 0 312 3 435 105 0 105 chr11 27545765 27545860 -123237693 - L1PA10 LINE L1 0 6168 6084 351 0 0 0 chr11 27545982 27546021 -123237532 + (TG)n Simple_repeat Simple_repeat 2 40 0 3960 130 66 24 chr11 27546159 27546867 -123236686 - L1PB4 LINE L1 0 6156 5479 2165 123 121 21 chr11 27546867 27547256 -123236297 + MSTA LTR MaLR 1 428 0 7305 177 108 9 chr11 27547256 27548758 -123234795 + MSTA-int LTR MaLR 1 1651 0 1633 183 126 23 chr11 27548758 27549146 -123234407 + MSTA LTR MaLR 1 428 0 3960 130 66 24 chr11 27549146 27549213 -123234340 - L1PB4 LINE L1 -676 5480 5347 499 294 53 12 chr11 27550016 27550186 -123233367 - MER5B DNA MER1_type -1 177 1 1146 138 10 10 chr11 27550504 27550699 -123232854 - MER46A DNA MER2_type -15 221 27 2099 111 0 0 chr11 27551295 27551606 -123231947 - AluSx SINE Alu 0 312 12 384 328 99 15 chr11 27552103 27552304 -123231249 + MIR SINE MIR 39 256 -6 1845 169 10 0 chr11 27552413 27552714 -123230839 + AluJo SINE Alu 1 304 -8 673 285 52 0 chr11 27552791 27552984 -123230569 - MIR SINE MIR -53 209 7 2458 66 10 0 chr11 27553503 27553807 -123229746 + AluSp SINE Alu 1 307 -6 22 35 0 0 chr11 27604863 27604892 -123178661 + AT_rich Low_complexity Low_complexity 1 29 0 883 172 24 53 chr11 27605058 27605267 -123178286 - MLT2D LTR ERVL -211 203 1 1787 175 16 0 chr11 27605270 27605585 -123177968 - L1MC1 LINE L1 -418 5915 5596 334 197 4 2 chr11 27605585 27605661 -123177892 + MLT1D LTR MaLR 298 505 0 277 315 27 18 chr11 27606073 27606184 -123177369 + MIR SINE MIR 56 167 -95 329 232 33 55 chr11 27606320 27606501 -123177052 - L1MC5 LINE L1 -297 7664 7488 254 394 65 7 chr11 27606508 27606663 -123176890 - L2 LINE L2 -555 2759 2596 275 343 0 0 chr11 27606727 27606829 -123176724 + L2 LINE L2 1846 1947 -1367 2217 128 0 3 chr11 27607979 27608292 -123175261 - AluSq SINE Alu 0 313 2 233 348 57 88 chr11 27608307 27608727 -123174826 + L2 LINE L2 2866 3272 0 390 256 156 69 chr11 27609576 27609736 -123173817 - MER5A DNA MER1_type -12 177 4 399 279 137 11 chr11 27610157 27610340 -123173213 - MIR SINE MIR -54 208 3 230 364 101 32 chr11 27610885 27611132 -123172421 - L3 LINE CR1 -164 1413 1150 537 322 62 6 chr11 27611151 27611328 -123172225 + MIR SINE MIR 26 212 -50 269 332 186 22 chr11 27611318 27611640 -123171913 - L3 LINE CR1 -476 1101 727 * 180 0 0 0 chr11 27611718 27611738 -123171815 + (TTA)n Simple_repeat Simple_repeat 2 21 0 3318 50 5 25 chr11 27611740 27612180 -123171373 - L1PA7 LINE L1 -18 6136 5706 383 374 11 22 chr11 27613183 27613365 -123170188 + MIR3 SINE MIR 15 194 -14 203 121 0 0 chr11 27615146 27615180 -123168373 - MER5A DNA MER1_type -152 37 4 266 357 52 0 chr11 27615883 27616037 -123167516 + HAL1 LINE L1 1384 1545 -962 276 240 0 0 chr11 27617202 27617252 -123166301 + MIR SINE MIR 78 127 -81 306 292 44 9 chr11 27617290 27617403 -123166150 - MIR SINE MIR 0 262 146 26 30 0 0 chr11 27617780 27617813 -123165740 + AT_rich Low_complexity Low_complexity 1 33 0 462 125 45 23 chr11 27617923 27618011 -123165542 - L1MC2 LINE L1 -2 6342 6253 1343 167 0 0 chr11 27618031 27618247 -123165306 - MSTA LTR MaLR -2 426 211 1143 143 0 0 chr11 27618264 27618425 -123165128 - AluJb SINE Alu -16 296 136 826 175 140 0 chr11 27618425 27618596 -123164957 - MSTA LTR MaLR -231 197 3 788 154 47 7 chr11 27618596 27618745 -123164808 - MSTA-int LTR MaLR -1 1650 1496 * 3438 167 20 5 chr11 27618736 27619371 -123164182 - MSTA-int LTR MaLR -1006 645 1 2123 170 80 10 chr11 27619371 27619771 -123163782 - MSTA LTR MaLR 0 428 1 988 138 87 41 chr11 27619776 27619994 -123163559 - L1MC1 LINE L1 -104 6229 6002 281 83 0 0 chr11 27620026 27620062 -123163491 + THE1C LTR MaLR 5 40 -335 1447 118 5 0 chr11 27620167 27620370 -123163183 + THE1B-int LTR MaLR 1157 1360 -220 38416 75 7 12 chr11 27620370 27622115 -123161438 + L1PA3 LINE L1 1 1753 -4402 2480 18 0 0 chr11 27622115 27622389 -123161164 + AluYa5 SINE Alu 35 308 -3 38416 75 7 12 chr11 27622389 27626828 -123156725 + L1PA3 LINE L1 1753 6155 0 7022 57 8 1 chr11 27626837 27627968 -123155585 + L1PA6 LINE L1 5016 6153 -1 1595 103 4 0 chr11 27627994 27628228 -123155325 + THE1B-int LTR MaLR 1346 1580 0 2509 129 3 3 chr11 27628228 27628592 -123154961 + THE1B LTR MaLR 1 364 0 5242 209 38 2 chr11 27628592 27630513 -123153040 + L1PA16 LINE L1 4202 6164 -2 324 322 168 7 chr11 27631393 27631679 -123151874 - L1ME4a LINE L1 -38 6083 5752 21 36 0 0 chr11 27632515 27632543 -123151010 + AT_rich Low_complexity Low_complexity 1 28 0 3231 140 22 4 chr11 27633291 27633840 -123149713 - L1MA8 LINE L1 -3 6288 5730 337 379 85 20 chr11 27634714 27635020 -123148533 - L2 LINE L2 -360 2954 2629 198 159 45 0 chr11 27636006 27636050 -123147503 - MIR SINE MIR -80 128 83 31 0 0 0 chr11 27636386 27636417 -123147136 + AT_rich Low_complexity Low_complexity 1 31 0 646 310 98 18 chr11 27636947 27637273 -123146280 - L3 LINE CR1 -73 1504 1153 523 246 18 83 chr11 27637685 27637913 -123145640 - MER58C DNA MER1_type -1 214 2 765 310 106 24 chr11 27638355 27638771 -123144782 - MLT1J2 LTR MaLR 0 450 1 183 154 46 0 chr11 27639338 27639403 -123144150 + (TA)n Simple_repeat Simple_repeat 1 68 0 1296 148 148 71 chr11 27639636 27639975 -123143578 - LTR49 LTR ERV1 -30 565 201 26 0 0 0 chr11 27640068 27640094 -123143459 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr11 27640184 27640217 -123143336 + AT_rich Low_complexity Low_complexity 1 33 0 4204 160 47 4 chr11 27640554 27641284 -123142269 + MER41B-int LTR ERV1 169 929 -5017 2921 148 80 22 chr11 27641270 27641809 -123141744 + MER41B-int LTR ERV1 1206 1775 -4171 * 498 128 39 0 chr11 27641788 27641866 -123141687 + MER41B-int LTR ERV1 1944 2024 -4239 * 3332 158 79 44 chr11 27641891 27642623 -123140930 + MER41B-int LTR ERV1 2261 3018 -3245 * 7096 102 28 10 chr11 27642621 27643660 -123139893 + MER41B-int LTR ERV1 4889 5946 0 3748 150 13 2 chr11 27643660 27644288 -123139265 + MER41B LTR ERV1 1 635 0 2358 77 0 3 chr11 27644341 27644640 -123138913 + AluY SINE Alu 1 298 -13 457 186 50 118 chr11 27644664 27644794 -123138759 - MLT1F LTR MaLR 0 542 424 2964 92 5 1 chr11 27644794 27645400 -123138153 - PABL_A LTR ERV1 0 660 8 1733 249 27 17 chr11 27645394 27645705 -123137848 - MLT1F LTR MaLR -123 419 102 * 3347 137 40 5 chr11 27645705 27646280 -123137273 + LTR49 LTR ERV1 1 595 0 1733 249 27 17 chr11 27646280 27646381 -123137172 - MLT1F LTR MaLR -440 102 3 1739 103 0 21 chr11 27647072 27647315 -123136238 - AluSg SINE Alu -18 292 55 847 219 5 33 chr11 27647786 27648001 -123135552 + MER3 DNA MER1_type 1 209 0 216 111 0 0 chr11 27648094 27648130 -123135423 + (CAT)n Simple_repeat Simple_repeat 3 38 0 319 376 34 98 chr11 27648157 27648878 -123134675 + L2 LINE L2 2601 3272 0 281 286 165 8 chr11 27649184 27649317 -123134236 - MIR SINE MIR -35 227 74 424 347 119 25 chr11 27649783 27650103 -123133450 + MLT1K LTR MaLR 10 359 -229 2099 154 46 29 chr11 27650115 27650657 -123132896 - MLT2A2 LTR ERVL 0 554 3 389 240 85 85 chr11 27651234 27651434 -123132119 - MIR SINE MIR -50 212 13 3428 214 76 27 chr11 27651439 27651894 -123131659 + Charlie1a DNA MER1_type 2 433 -2328 2060 144 0 3 chr11 27651894 27652192 -123131361 - AluSx SINE Alu -14 298 2 3428 214 76 27 chr11 27652192 27652426 -123131127 + Charlie1a DNA MER1_type 433 654 -2107 2139 134 0 0 chr11 27652426 27652724 -123130829 + AluSx SINE Alu 1 298 -14 3428 214 76 27 chr11 27652724 27652990 -123130563 + Charlie1a DNA MER1_type 654 1005 -450 1179 151 110 33 chr11 27653016 27653353 -123130200 + Charlie1a DNA MER1_type 1089 1451 -4 484 305 62 49 chr11 27653377 27653685 -123129868 - L2 LINE L2 -79 3234 2923 188 65 0 32 chr11 27655457 27655488 -123128065 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 288 158 0 0 chr11 27655635 27655692 -123127861 + CT-rich Low_complexity Low_complexity 1 57 0 1733 146 0 63 chr11 27656347 27656672 -123126881 - AluSx SINE Alu 0 306 1 258 318 91 13 chr11 27657946 27658100 -123125453 - MIR SINE MIR -44 218 53 868 138 36 0 chr11 27658551 27658718 -123124835 - L1MA8 LINE L1 0 6291 6119 1911 122 68 54 chr11 27659267 27659637 -123123916 + THE1C LTR MaLR 1 375 0 9608 118 8 88 chr11 27659637 27661036 -123122517 + THE1C-int LTR MaLR 1 1238 -342 2163 103 19 26 chr11 27661036 27661346 -123122207 + AluSg SINE Alu 1 308 -2 9608 118 8 88 chr11 27661346 27661663 -123121890 + THE1C-int LTR MaLR 1238 1579 -1 1727 146 76 25 chr11 27661664 27662021 -123121532 + THE1C LTR MaLR 1 375 0 603 158 15 8 chr11 27662083 27662216 -123121337 + CT-rich Low_complexity Low_complexity 3 136 0 1218 234 75 3 chr11 27662248 27662530 -123121023 - AluJo SINE Alu 0 302 1 238 325 32 26 chr11 27662621 27662775 -123120778 - L1ME LINE L1 -380 5782 5628 230 319 76 17 chr11 27662815 27662934 -123120619 - L1ME LINE L1 -538 5583 5458 602 84 0 0 chr11 27663255 27663338 -123120215 - Alu SINE Alu -9 303 221 1351 315 72 65 chr11 27663339 27664972 -123118581 - L1ME LINE L1 -1121 5025 3383 214 232 43 29 chr11 27665735 27665804 -123117749 + MIR SINE MIR 84 144 -64 1751 287 109 91 chr11 27665854 27667695 -123115858 - L2 LINE L2 0 3313 1442 23 33 0 0 chr11 27668598 27668628 -123114925 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 27668738 27668767 -123114786 + AT_rich Low_complexity Low_complexity 1 29 0 570 206 59 0 chr11 27671288 27671424 -123112129 - MLT1E LTR MaLR 0 654 511 * 799 261 96 56 chr11 27671397 27671623 -123111930 - MLT1E LTR MaLR -199 394 152 405 0 0 0 chr11 27671623 27671668 -123111885 + (CA)n Simple_repeat Simple_repeat 2 46 0 799 261 96 56 chr11 27671668 27671744 -123111809 - MLT1E LTR MaLR -441 152 80 221 203 0 78 chr11 27673004 27673068 -123110485 + MIR SINE MIR 96 154 -108 210 143 0 0 chr11 27674104 27674139 -123109414 + (TA)n Simple_repeat Simple_repeat 1 35 0 460 88 18 35 chr11 27674245 27674358 -123109195 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 374 285 6 58 chr11 27674636 27674808 -123108745 - L1ME LINE L1 -400 5721 5559 614 152 9 0 chr11 27675085 27675197 -123108356 - FLAM_C SINE Alu 0 143 31 184 306 20 0 chr11 27675888 27675937 -123107616 + MIR SINE MIR 194 243 -19 21 36 0 0 chr11 27675944 27675972 -123107581 + AT_rich Low_complexity Low_complexity 1 28 0 187 378 75 51 chr11 27676042 27676336 -123107217 - L2 LINE L2 -32 3240 2940 701 281 77 16 chr11 27676408 27676654 -123106899 - MIR SINE MIR 0 262 2 227 342 59 20 chr11 27676858 27677060 -123106493 + L2 LINE L2 2228 2437 -877 248 292 97 42 chr11 27677436 27677580 -123105973 - MIR SINE MIR 0 262 111 501 17 0 0 chr11 27678949 27679007 -123104546 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 1709 110 11 0 chr11 27679194 27679458 -123104095 - L1 LINE L1 -1324 4822 4556 846 313 61 67 chr11 27679694 27680670 -123102883 + L2 LINE L2 2220 3173 -140 30 27 0 0 chr11 27680881 27680918 -123102635 + AT_rich Low_complexity Low_complexity 1 37 0 2867 206 58 83 chr11 27681075 27681979 -123101574 - L1MD2 LINE L1 -15 6344 5464 708 267 19 24 chr11 27683003 27683213 -123100340 - MER3 DNA MER1_type 0 209 1 2089 188 83 11 chr11 27683280 27683716 -123099837 - MLT1C LTR MaLR 0 467 1 317 333 0 11 chr11 27684743 27684830 -123098723 - MIR3 SINE MIR -108 100 15 1104 291 56 16 chr11 27685327 27685647 -123097906 + LTR40a LTR ERVL 66 398 -121 14649 198 30 9 chr11 27685667 27691956 -123091597 - L1PB1 LINE L1 -1 6866 242 807 216 6 0 chr11 27691975 27692137 -123091416 - L1PB1 LINE L1 -6695 168 6 763 128 9 0 chr11 27692230 27692339 -123091214 + LTR40b LTR ERVL 353 462 0 5419 144 28 29 chr11 27692499 27692690 -123090863 - HSMAR2 DNA Mariner -1 1301 1111 2197 116 0 0 chr11 27692690 27693007 -123090546 - AluSx SINE Alu 0 317 1 5419 144 28 29 chr11 27693007 27693778 -123089775 - HSMAR2 DNA Mariner -191 1111 339 241 242 137 11 chr11 27693792 27693887 -123089666 + L1M4 LINE L1 5005 5111 -1035 1961 121 3 42 chr11 27693899 27694206 -123089347 - AluSc SINE Alu -14 295 1 32 26 0 0 chr11 27694211 27694250 -123089303 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr11 27694305 27694337 -123089216 + AT_rich Low_complexity Low_complexity 1 32 0 486 291 8 0 chr11 27694624 27694751 -123088802 + MLT1I LTR MaLR 29 156 -253 2137 144 128 10 chr11 27694999 27695382 -123088171 - MSTA LTR MaLR 0 428 1 8713 186 19 7 chr11 27695382 27697014 -123086539 - MSTA-int LTR MaLR 0 1651 1 1929 169 137 11 chr11 27697014 27697386 -123086167 - MSTA LTR MaLR 0 428 10 193 56 28 28 chr11 27697388 27697424 -123086129 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 635 276 18 26 chr11 27697750 27697978 -123085575 - L1ME2 LINE L1 -20 6144 5919 2034 234 59 42 chr11 27697990 27698756 -123084797 - L1ME2 LINE L1 -838 5308 4530 256 380 9 26 chr11 27699006 27699030 -123084523 - MIR SINE MIR -64 144 121 2276 99 0 0 chr11 27699030 27699362 -123084191 + AluSx SINE Alu 3 334 0 256 380 9 26 chr11 27699362 27699449 -123084104 - MIR SINE MIR -87 121 34 185 311 185 15 chr11 27701437 27701572 -123081981 + MIR SINE MIR 93 250 -12 348 335 108 12 chr11 27702183 27702350 -123081203 + MIR SINE MIR 10 192 -70 790 276 166 33 chr11 27704807 27704982 -123078571 + MLT1D LTR MaLR 1 151 -354 2000 117 0 4 chr11 27704982 27705263 -123078290 + AluSx SINE Alu 33 312 0 790 276 166 33 chr11 27705263 27705485 -123078068 + MLT1D LTR MaLR 151 451 -54 317 264 64 18 chr11 27706076 27706186 -123077367 - MIR SINE MIR -38 224 110 333 0 0 0 chr11 27707131 27707168 -123076385 + (CA)n Simple_repeat Simple_repeat 2 38 0 294 255 245 0 chr11 27707411 27707509 -123076044 - MER5A DNA MER1_type -7 182 61 1599 260 95 55 chr11 27707724 27708373 -123075180 + L1MCc LINE L1 1090 1711 -5411 207 0 0 0 chr11 27708373 27708396 -123075157 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1599 260 95 55 chr11 27708396 27708573 -123074980 + L1MCc LINE L1 1711 1879 -5243 213 94 0 0 chr11 27708573 27708605 -123074948 + (CA)n Simple_repeat Simple_repeat 2 33 0 1599 260 95 55 chr11 27708605 27709309 -123074244 + L1MCc LINE L1 1879 2871 -4251 759 157 143 0 chr11 27709320 27709460 -123074093 + AluJb SINE Alu 1 160 -152 493 186 0 0 chr11 27709461 27709547 -123074006 + MLT1A1 LTR MaLR 280 365 0 591 268 61 22 chr11 27709548 27709776 -123073777 - MLT1E LTR MaLR -342 251 15 202 323 32 86 chr11 27709983 27710076 -123073477 + L2 LINE L2 3092 3179 -93 858 289 98 15 chr11 27710266 27710743 -123072810 + LTR33 LTR ERVL 1 517 -4 251 327 0 0 chr11 27710834 27710889 -123072664 - L2 LINE L2 -71 3201 3147 851 129 34 0 chr11 27710956 27711103 -123072450 - L1MA7 LINE L1 -3 6288 6137 1150 168 46 50 chr11 27711106 27711368 -123072185 + L1MA7 LINE L1 5886 6146 -145 346 288 187 23 chr11 27711603 27711822 -123071731 - MIR SINE MIR -1 261 7 729 275 120 63 chr11 27713122 27713683 -123069870 - MLT1H1 LTR MaLR -11 544 1 529 285 40 13 chr11 27714999 27715150 -123068403 - MIR SINE MIR -72 190 36 296 289 154 0 chr11 27715236 27715340 -123068213 + MIR SINE MIR 7 126 -136 624 200 50 22 chr11 27715912 27716092 -123067461 - MER53 DNA DNA -2 187 3 272 301 85 45 chr11 27716516 27716715 -123066838 + MLT1J2 LTR MaLR 122 328 -122 508 278 58 54 chr11 27716952 27717175 -123066378 - MIR SINE MIR -1 261 38 263 274 0 0 chr11 27717869 27717931 -123065622 + L2 LINE L2 3251 3312 -1 236 222 0 0 chr11 27718309 27718354 -123065199 + L2 LINE L2 3264 3308 -5 398 284 68 20 chr11 27718502 27718650 -123064903 + MIR SINE MIR 52 206 -56 2329 51 20 3 chr11 27719768 27719935 -123063618 - AluY SINE Alu -10 301 125 216 0 0 0 chr11 27719935 27719959 -123063594 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2329 51 20 3 chr11 27719959 27720087 -123063466 - AluY SINE Alu -186 125 1 257 324 47 115 chr11 27721271 27721549 -123062004 - L2 LINE L2 -14 3258 3000 22 35 0 0 chr11 27721675 27721704 -123061849 + AT_rich Low_complexity Low_complexity 1 29 0 287 328 102 53 chr11 27721710 27722052 -123061501 - L2 LINE L2 -510 2804 2446 308 265 29 59 chr11 27722178 27722280 -123061273 + MIR SINE MIR 86 184 -78 2512 67 0 0 chr11 27722476 27722774 -123060779 - AluY SINE Alu -13 298 1 209 224 0 17 chr11 27723356 27723414 -123060139 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 1028 259 15 36 chr11 27723754 27724121 -123059432 + L1MC4 LINE L1 7691 7995 0 21 71 0 0 chr11 27724125 27724167 -123059386 + AT_rich Low_complexity Low_complexity 1 42 0 295 318 48 16 chr11 27726130 27726256 -123057297 - MIR3 SINE MIR -41 167 38 207 264 16 24 chr11 27726866 27726943 -123056610 + GA-rich Low_complexity Low_complexity 2 124 0 28 48 0 0 chr11 27727928 27727970 -123055583 + AT_rich Low_complexity Low_complexity 1 42 0 416 339 48 26 chr11 27727976 27728206 -123055347 - MIR SINE MIR -3 259 25 410 295 94 19 chr11 27728965 27729173 -123054380 - MIR SINE MIR -24 238 19 289 315 32 10 chr11 27730079 27730205 -123053348 - MIR SINE MIR -86 122 26 180 270 16 16 chr11 27730541 27730604 -123052949 + L2 LINE L2 3250 3312 -1 211 147 0 0 chr11 27730833 27730867 -123052686 - MIR SINE MIR -10 252 219 181 342 63 13 chr11 27732629 27732708 -123050845 + L2 LINE L2 3001 3083 -189 1003 264 70 52 chr11 27732763 27733108 -123050445 - MER69 DNA AcHobo -2041 485 135 243 336 55 18 chr11 27733929 27734039 -123049514 + L2 LINE L2 3139 3252 -20 1059 174 162 43 chr11 27734119 27734399 -123049154 - AluJo SINE Alu 0 310 1 638 242 50 45 chr11 27735326 27735611 -123047942 + MLT1G1 LTR MaLR 10 267 -288 249 281 171 14 chr11 27735660 27735806 -123047747 + MLT1G1 LTR MaLR 407 575 -15 1699 267 55 9 chr11 27735820 27736400 -123047153 + L1ME3 LINE L1 5261 5867 -295 3401 128 66 2 chr11 27737579 27738183 -123045370 + L1PBa LINE L1 1842 2484 -4379 4969 220 19 49 chr11 27738284 27739039 -123044514 + L1 LINE L1 3280 4056 -2090 2202 130 3 0 chr11 27739039 27739346 -123044207 + AluSp SINE Alu 1 308 -5 4969 220 19 49 chr11 27739346 27739754 -123043799 + L1 LINE L1 4056 4475 -1671 189 0 0 0 chr11 27739754 27739775 -123043778 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 4969 220 19 49 chr11 27739775 27739854 -123043699 + L1 LINE L1 4475 4555 -1591 2000 107 41 4 chr11 27739854 27740124 -123043429 + AluSc SINE Alu 1 385 0 870 9 19 0 chr11 27740124 27740229 -123043324 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 4969 220 19 49 chr11 27740229 27740381 -123043172 + L1 LINE L1 4555 4635 -1511 519 84 21 42 chr11 27740484 27740579 -123042974 + L1PBa LINE L1 2519 2611 -4252 337 100 0 50 chr11 27740577 27740637 -123042916 + L1PBa LINE L1 2814 2870 -3993 * 1404 156 0 0 chr11 27740652 27740864 -123042689 - AluSq SINE Alu 0 313 102 2658 168 9 26 chr11 27740867 27741440 -123042113 + L1 LINE L1 2877 3439 -3423 186 71 0 0 chr11 27741661 27741689 -123041864 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2207 88 4 0 chr11 27741714 27741988 -123041565 - AluY SINE Alu -36 275 1 25 0 0 0 chr11 27742128 27742153 -123041400 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr11 27742791 27742819 -123040734 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr11 27742964 27742997 -123040556 + AT_rich Low_complexity Low_complexity 1 33 0 961 255 14 3 chr11 27743145 27743435 -123040118 + L1 LINE L1 2750 3042 -3104 5303 142 19 7 chr11 27743539 27744151 -123039402 + L1PB2 LINE L1 4862 5465 -686 1508 200 39 0 chr11 27744151 27744436 -123039117 + AluJb SINE Alu 1 296 -16 5303 142 19 7 chr11 27744436 27745095 -123038458 + L1PB2 LINE L1 5465 6144 -7 2118 139 3 0 chr11 27745108 27745411 -123038142 + AluSq SINE Alu 1 304 -9 822 237 31 0 chr11 27745414 27745642 -123037911 + L1PA15-16 LINE L1 2125 2359 -4490 427 221 115 0 chr11 27745648 27745770 -123037783 + L1PA15-16 LINE L1 3099 3234 -3615 3225 266 15 16 chr11 27745770 27746901 -123036652 + L1P LINE L1 2370 3499 -3350 1919 189 56 12 chr11 27746901 27747309 -123036244 - MSTB LTR MaLR 0 426 1 7527 202 44 13 chr11 27747309 27748910 -123034643 - MSTB-int LTR MaLR 0 1651 1 2019 179 37 22 chr11 27748922 27749329 -123034224 - MSTB LTR MaLR -13 413 1 2695 239 28 21 chr11 27749335 27750255 -123033298 + L1 LINE L1 3501 4427 -2422 2244 195 35 6 chr11 27750284 27750771 -123032782 + THE1-int LTR MaLR 285 785 -795 705 147 0 0 chr11 27750773 27750889 -123032664 + THE1-int LTR MaLR 1021 1136 -444 359 278 139 120 chr11 27751035 27751251 -123032302 + MLT1E LTR MaLR 1 228 -314 2305 112 0 0 chr11 27751251 27751564 -123031989 - AluSq SINE Alu 0 313 1 359 278 139 120 chr11 27751564 27751721 -123031832 + MLT1E LTR MaLR 228 381 -161 1826 183 62 5 chr11 27751807 27752179 -123031374 - MSTD LTR MaLR -3 393 1 1033 254 49 14 chr11 27752191 27752561 -123030992 - HAL1 LINE L1 -742 1765 1383 967 312 77 2 chr11 27752680 27753084 -123030469 + LTR16A LTR ERVL 17 450 0 435 270 44 16 chr11 27753173 27753425 -123030128 - HAL1 LINE L1 -1184 1323 1065 204 241 35 0 chr11 27753446 27753504 -123030049 + CT-rich Low_complexity Low_complexity 1 60 0 429 231 0 19 chr11 27753643 27753799 -123029754 + CT-rich Low_complexity Low_complexity 4 156 0 395 287 81 43 chr11 27754777 27755185 -123028368 - MLT1I LTR MaLR -2 407 24 257 303 184 7 chr11 27755250 27755402 -123028151 - MIR3 SINE MIR 0 208 30 303 265 17 26 chr11 27755477 27755594 -123027959 + MER103 DNA DNA 3 118 -48 491 350 47 20 chr11 27756136 27756436 -123027117 - L3 LINE CR1 -649 928 621 388 327 65 7 chr11 27756750 27756903 -123026650 - MIR SINE MIR -73 189 28 500 298 29 29 chr11 27757080 27757251 -123026302 - MER5A DNA MER1_type 0 189 19 1308 165 4 35 chr11 27757736 27757996 -123025557 - MLT1B LTR MaLR 0 390 139 1953 194 2 25 chr11 27758403 27758800 -123024753 - MLT1B LTR MaLR 0 390 3 2395 161 26 0 chr11 27758955 27759372 -123024181 - MSTC LTR MaLR 0 428 1 29 0 0 0 chr11 27759822 27759851 -123023702 + AT_rich Low_complexity Low_complexity 1 29 0 293 320 0 33 chr11 27759898 27760048 -123023505 + GA-rich Low_complexity Low_complexity 1 145 0 1902 138 3 64 chr11 27760539 27760866 -123022687 + AluSc SINE Alu 1 307 -2 378 0 0 0 chr11 27761930 27761972 -123021581 + (TG)n Simple_repeat Simple_repeat 1 42 0 339 25 0 0 chr11 27761971 27762011 -123021542 + (GA)n Simple_repeat Simple_repeat 1 40 0 * 311 333 128 7 chr11 27763167 27763308 -123020245 - MIR3 SINE MIR -21 187 30 504 81 0 0 chr11 27763408 27763482 -123020071 + (TA)n Simple_repeat Simple_repeat 2 75 0 541 269 54 50 chr11 27763903 27764163 -123019390 + L2 LINE L2 2949 3209 -104 2606 127 56 2 chr11 27764830 27765256 -123018297 + L1PA15 LINE L1 5717 6165 0 29 28 0 0 chr11 27765266 27765302 -123018251 + AT_rich Low_complexity Low_complexity 1 36 0 371 192 0 0 chr11 27765911 27765984 -123017569 + AluJ/FLAM SINE Alu 11 83 -219 22 35 0 0 chr11 27766288 27766317 -123017236 + AT_rich Low_complexity Low_complexity 1 29 0 408 298 86 7 chr11 27766364 27766515 -123017038 + MIR SINE MIR 100 262 0 240 86 0 0 chr11 27766520 27766555 -123016998 + (CTA)n Simple_repeat Simple_repeat 1 35 0 2744 136 48 16 chr11 27766614 27767113 -123016440 - L1MA9 LINE L1 0 6312 5798 234 0 0 0 chr11 27767116 27767142 -123016411 + (TG)n Simple_repeat Simple_repeat 2 27 0 755 197 0 0 chr11 27767307 27767449 -123016104 + MLT1A1 LTR MaLR 224 365 0 2354 188 75 48 chr11 27767449 27768158 -123015395 + Cheshire DNA MER1_type 1691 2418 -2 444 296 35 6 chr11 27768160 27768332 -123015221 - MLT1J2 LTR MaLR -7 443 267 183 222 37 0 chr11 27768438 27768492 -123015061 - L2 LINE L2 -1075 2239 2184 457 254 5 92 chr11 27768593 27768669 -123014884 - L1ME LINE L1 -450 5671 5590 2766 71 5 3 chr11 27768669 27769037 -123014516 - L1PA8 LINE L1 -15 6157 5789 457 254 5 92 chr11 27769037 27769145 -123014408 - L1ME LINE L1 -531 5590 5503 23 54 0 0 chr11 27769176 27769213 -123014340 + AT_rich Low_complexity Low_complexity 1 37 0 4083 92 2 5 chr11 27769442 27770032 -123013521 - L1PA8A LINE L1 -30 6101 5514 611 204 72 30 chr11 27770149 27770507 -123013046 - MER4C LTR ERV1 -224 461 1 2506 174 21 46 chr11 27770691 27771259 -123012294 - MER41C LTR ERV1 0 554 1 2657 40 0 3 chr11 27771680 27772002 -123011551 - L1PA5 LINE L1 -8 6146 5826 1515 58 85 123 chr11 27772002 27772295 -123011258 - AluY SINE Alu -29 282 1 352 316 64 43 chr11 27773696 27773930 -123009623 + MIR SINE MIR 11 249 -13 2201 136 3 3 chr11 27773946 27774300 -123009253 + THE1C LTR MaLR 1 354 -21 205 295 84 42 chr11 27774300 27774395 -123009158 - MIR SINE MIR -123 139 41 326 254 0 0 chr11 27774643 27774706 -123008847 + L2 LINE L2 3209 3271 -1 2031 126 11 0 chr11 27774793 27775078 -123008475 + AluSg SINE Alu 1 288 -22 23590 135 8 6 chr11 27775182 27779261 -123004292 - L1P LINE L1 -771 5375 1290 2981 142 15 0 chr11 27779263 27779743 -123003810 - L1P3 LINE L1 -5375 500 14 1293 198 172 15 chr11 27780105 27780500 -123003053 + MSTB2 LTR MaLR 1 457 0 2017 70 7 25 chr11 27780530 27780816 -123002737 + L1PA7 LINE L1 5873 6153 -1 1750 182 14 14 chr11 27781777 27782124 -123001429 - MER7A DNA MER2_type 0 346 2 1639 163 7 4 chr11 27782355 27782631 -123000922 + MLT1A1 LTR MaLR 10 286 -79 1303 187 106 3 chr11 27783493 27783537 -123000016 - MER63B DNA MER1_type -689 373 335 1787 158 3 11 chr11 27783537 27783865 -122999688 + AluJb SINE Alu 1 326 0 1303 187 106 3 chr11 27783865 27784150 -122999403 - MER63B DNA MER1_type -727 335 9 527 274 35 62 chr11 27785581 27785652 -122997901 + L2 LINE L2 3094 3165 -148 1977 143 0 39 chr11 27785652 27785959 -122997594 - AluSx SINE Alu -17 295 1 527 274 35 62 chr11 27785959 27786113 -122997440 + L2 LINE L2 3165 3313 0 340 299 10 0 chr11 27786237 27786334 -122997219 + MIR SINE MIR 57 154 -108 200 182 0 0 chr11 27789538 27789571 -122993982 + (CA)n Simple_repeat Simple_repeat 1 33 0 262 263 92 13 chr11 27789651 27789727 -122993826 - MIR3 SINE MIR -53 155 93 321 335 70 11 chr11 27790172 27790357 -122993196 + MER117 DNA MER1_type 2 197 0 238 200 0 0 chr11 27790360 27790405 -122993148 + MIR3 SINE MIR 156 200 -8 226 245 0 0 chr11 27790814 27790863 -122992690 - L2 LINE L2 -17 3296 3248 419 213 0 0 chr11 27791111 27791191 -122992362 + MIR SINE MIR 183 262 0 22 35 0 0 chr11 27792042 27792071 -122991482 + AT_rich Low_complexity Low_complexity 1 29 0 985 210 84 27 chr11 27792420 27792765 -122990788 - MSTD LTR MaLR 0 396 1 466 272 72 47 chr11 27792868 27792893 -122990660 - L1ME4a LINE L1 -4 6117 6094 2194 122 0 0 chr11 27792893 27793188 -122990365 + AluSg SINE Alu 1 295 -15 466 272 72 47 chr11 27793188 27793397 -122990156 - L1ME4a LINE L1 -27 6094 5877 312 371 8 8 chr11 27793458 27793582 -122989971 + MIR SINE MIR 32 155 -107 294 306 16 16 chr11 27793597 27793721 -122989832 - MIR SINE MIR -37 225 102 2156 128 0 7 chr11 27794285 27794581 -122988972 + AluSx SINE Alu 1 294 -18 733 370 53 23 chr11 27794613 27795154 -122988399 - L2 LINE L2 -211 3102 2549 235 254 0 18 chr11 27796219 27796283 -122987270 + CT-rich Low_complexity Low_complexity 5 108 0 472 337 34 0 chr11 27796334 27796512 -122987041 + MIR SINE MIR 51 234 -28 239 270 56 11 chr11 27797801 27797890 -122985663 + MER103 DNA DNA 6 98 -68 2299 113 43 38 chr11 27797919 27798292 -122985261 + THE1C LTR MaLR 1 375 0 461 253 180 0 chr11 27798696 27798846 -122984707 - MIR SINE MIR -13 249 73 192 77 0 0 chr11 27799447 27799473 -122984080 + (TATG)n Simple_repeat Simple_repeat 3 28 0 957 269 72 21 chr11 27799849 27800184 -122983369 + LTR16A LTR ERVL 94 445 -5 582 176 0 59 chr11 27800190 27800309 -122983244 + L2 LINE L2 3187 3298 -15 244 306 118 41 chr11 27800484 27800755 -122982798 - L2 LINE L2 0 3313 3022 330 322 176 5 chr11 27800783 27800988 -122982565 + MIR SINE MIR 18 257 -5 219 315 36 48 chr11 27801027 27801192 -122982361 - L2 LINE L2 -338 2975 2813 229 308 0 43 chr11 27802671 27802788 -122980765 + T-rich Low_complexity Low_complexity 4 115 0 220 98 0 59 chr11 27802803 27802854 -122980699 + (TTTTC)n Simple_repeat Simple_repeat 4 51 0 197 247 12 0 chr11 27803130 27803211 -122980342 + CT-rich Low_complexity Low_complexity 3 84 0 191 299 65 26 chr11 27803588 27803665 -122979888 - L2 LINE L2 -50 3263 3184 384 327 102 19 chr11 27803680 27803885 -122979668 + MIR SINE MIR 1 222 -40 22 0 0 0 chr11 27803978 27804000 -122979553 + AT_rich Low_complexity Low_complexity 1 22 0 1979 106 108 41 chr11 27804714 27805055 -122978498 - THE1B LTR MaLR 0 364 1 11221 101 25 0 chr11 27805055 27806596 -122976957 - THE1B-int LTR MaLR 0 1580 1 2071 131 47 33 chr11 27806596 27806955 -122976598 - THE1B LTR MaLR 0 364 1 913 139 97 28 chr11 27808289 27808505 -122975048 - MER44D DNA MER2_type -108 501 1 302 309 59 15 chr11 27808509 27808645 -122974908 + HAL1 LINE L1 2158 2299 -208 299 285 33 74 chr11 27808651 27808893 -122974660 + HAL1 LINE L1 2275 2506 -1 6634 126 9 28 chr11 27809137 27810883 -122972670 - L1MA2 LINE L1 0 7723 6009 1050 148 7 7 chr11 27810883 27811038 -122972515 - AluSx SINE Alu -157 155 1 11835 158 26 19 chr11 27811045 27814373 -122969180 - L1MA2 LINE L1 -2696 4869 1512 1174 207 67 23 chr11 27814363 27814663 -122968890 - L1MA2 LINE L1 -7233 332 20 * 401 217 174 43 chr11 27815473 27815611 -122967942 - MER5B DNA MER1_type 0 178 23 230 350 38 0 chr11 27815687 27815767 -122967786 + MIR SINE MIR 64 146 -62 201 376 68 8 chr11 27816623 27816740 -122966813 - L2 LINE L2 -208 3064 2941 273 289 89 0 chr11 27817038 27817128 -122966425 - L2 LINE L2 -26 3246 3149 594 280 28 0 chr11 27817162 27817344 -122966209 + MIR SINE MIR 76 262 0 327 25 0 0 chr11 27818292 27818332 -122965221 + (TG)n Simple_repeat Simple_repeat 2 41 0 815 341 70 20 chr11 27819562 27819757 -122963796 - L3 LINE CR1 -230 1347 1163 1226 220 82 25 chr11 27819757 27820111 -122963442 + MLT1A2 LTR MaLR 1 374 0 815 341 70 20 chr11 27820111 27820270 -122963283 - L3 LINE CR1 -414 1163 975 204 196 41 41 chr11 27820383 27820480 -122963073 + (TATAA)n Simple_repeat Simple_repeat 5 101 0 366 275 42 21 chr11 27821334 27821476 -122962077 + MER117 DNA MER1_type 51 195 -2 356 264 58 58 chr11 27821476 27821597 -122961956 - MIR3 SINE MIR -53 155 35 286 289 211 0 chr11 27821737 27821865 -122961688 - MIR3 SINE MIR -27 181 27 223 337 0 24 chr11 27821899 27821982 -122961571 - L2 LINE L2 0 3272 3192 362 354 42 16 chr11 27822083 27822275 -122961278 - L2 LINE L2 -189 3083 2887 399 265 31 0 chr11 27823817 27823915 -122959638 - L2 LINE L2 -6 3307 3207 250 341 55 55 chr11 27824493 27824675 -122958878 + L2 LINE L2 2948 3129 -143 314 320 114 41 chr11 27824802 27825021 -122958532 + MIR SINE MIR 23 257 -5 733 222 9 65 chr11 27825176 27825392 -122958161 + MER58A DNA MER1_type 21 224 0 438 261 99 0 chr11 27826575 27826717 -122956836 - MIR SINE MIR -15 247 92 390 283 167 35 chr11 27826716 27826974 -122956579 + L3 LINE CR1 1244 1535 -42 * 465 237 107 58 chr11 27827069 27827124 -122956429 - MIR SINE MIR -3 259 208 225 0 0 0 chr11 27827124 27827149 -122956404 + (TA)n Simple_repeat Simple_repeat 2 26 0 465 237 107 58 chr11 27827149 27827330 -122956223 - MIR SINE MIR -54 208 4 730 309 5 18 chr11 27828111 27828334 -122955219 + MIR SINE MIR 16 235 -27 357 200 62 0 chr11 27828756 27828836 -122954717 + MIR SINE MIR 176 260 -2 2350 78 0 3 chr11 27828963 27829258 -122954295 - AluY SINE Alu -17 294 1 411 320 142 45 chr11 27832221 27832468 -122951085 + L3 LINE CR1 1306 1576 -1 549 318 32 37 chr11 27833285 27833502 -122950051 + MIR SINE MIR 7 222 -40 1325 276 97 0 chr11 27833519 27834163 -122949390 + HsTC2 DNA Tc2 5 721 -1177 528 249 11 6 chr11 27834185 27834362 -122949191 + GA-rich Low_complexity Low_complexity 1 178 0 399 217 0 0 chr11 27834362 27834445 -122949108 + HsTC2 DNA Tc2 1272 1354 -544 478 255 90 21 chr11 27834463 27834753 -122948800 + HsTC2 DNA Tc2 1586 1895 -3 21 36 0 0 chr11 27835509 27835537 -122948016 + AT_rich Low_complexity Low_complexity 1 28 0 254 32 0 0 chr11 27836206 27836237 -122947316 + L1PA5 LINE L1 5702 5732 -422 36043 30 19 1 chr11 27836245 27842265 -122941288 + L1PA2 LINE L1 6 6155 0 3464 33 2 5 chr11 27842265 27842686 -122940867 + L1PA5 LINE L1 5724 6146 -8 29 0 0 0 chr11 27842686 27842715 -122940838 + AT_rich Low_complexity Low_complexity 1 29 0 522 200 30 85 chr11 27842845 27842938 -122940615 - L1MA10 LINE L1 -4 6330 6238 1981 223 109 30 chr11 27842938 27843570 -122939983 - L1ME2 LINE L1 -80 6153 5472 1824 141 42 133 chr11 27843570 27844023 -122939530 - MSTC LTR MaLR 0 428 17 609 246 38 43 chr11 27844023 27844310 -122939243 - L1ME2 LINE L1 -746 5469 5190 760 125 163 0 chr11 27844313 27844473 -122939080 - MER46B DNA MER2_type -175 61 1 1203 246 19 0 chr11 27844483 27844796 -122938757 - L1ME2 LINE L1 -1232 4983 4665 256 313 0 0 chr11 27844792 27844856 -122938697 - L1ME2 LINE L1 -6081 315 252 * 631 217 14 7 chr11 27844867 27845010 -122938543 - L1ME2 LINE L1 -6209 187 44 181 264 209 39 chr11 27846560 27846689 -122936864 - L3 LINE CR1 -257 1320 1170 252 300 50 30 chr11 27846740 27846840 -122936713 + MIR SINE MIR 9 110 -152 202 147 29 0 chr11 27846850 27846918 -122936635 + (TA)n Simple_repeat Simple_repeat 2 71 0 2365 154 150 36 chr11 27846923 27847450 -122936103 + LTR18B LTR ERVL 1 587 -27 228 337 58 0 chr11 27847500 27847586 -122935967 + MIR SINE MIR 161 251 -11 500 268 96 25 chr11 27848284 27848482 -122935071 + MIR SINE MIR 21 232 -30 570 227 0 0 chr11 27848756 27848866 -122934687 + MER20 DNA MER1_type 110 219 0 1728 101 0 0 chr11 27849166 27849393 -122934160 + AluSc SINE Alu 82 308 -1 358 361 0 0 chr11 27850239 27850347 -122933206 + MER117 DNA MER1_type 54 161 -36 328 333 32 16 chr11 27850379 27850502 -122933051 - L2 LINE L2 -1 3271 3147 745 299 87 22 chr11 27850535 27851001 -122932552 + MLT1H LTR MaLR 3 549 0 491 300 104 22 chr11 27851008 27851238 -122932315 + L2 LINE L2 3063 3311 -2 212 378 20 20 chr11 27852003 27852101 -122931452 - L2 LINE L2 -36 3277 3180 248 321 24 0 chr11 27852164 27852248 -122931305 + MIR SINE MIR 162 247 -15 278 26 26 0 chr11 27854054 27854093 -122929460 + (GAGAA)n Simple_repeat Simple_repeat 3 42 0 1084 30 47 0 chr11 27854099 27854268 -122929285 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 212 217 43 0 chr11 27854269 27854315 -122929238 + (CAGA)n Simple_repeat Simple_repeat 1 48 0 245 253 48 0 chr11 27854365 27854448 -122929105 + LTR67 LTR ERVL 457 543 -14 210 255 266 0 chr11 27854450 27854544 -122929009 + L2 LINE L2 3175 3293 -20 2131 177 8 0 chr11 27855828 27856190 -122927363 - MLT1A1 LTR MaLR 0 365 1 657 291 89 18 chr11 27856330 27856885 -122926668 + L1ME LINE L1 4931 5520 -646 1634 230 54 32 chr11 27857349 27857814 -122925739 + MER74A LTR ERVL 14 488 -70 284 202 126 42 chr11 27857707 27857826 -122925727 - MER88 LTR ERVL -257 207 79 * 560 281 132 55 chr11 27858012 27858275 -122925278 - MLT1J2 LTR MaLR -21 429 135 1594 148 31 69 chr11 27858275 27858592 -122924961 - AluJb SINE Alu -7 305 1 560 281 132 55 chr11 27858592 27858655 -122924898 - MLT1J2 LTR MaLR -315 135 78 607 279 116 17 chr11 27859369 27859602 -122923951 - MIR SINE MIR 0 262 7 284 297 82 55 chr11 27861243 27861462 -122922091 + MLT1H LTR MaLR 80 304 -245 2248 221 11 74 chr11 27861703 27862267 -122921286 + MLT2B3 LTR ERVL 4 489 -31 293 189 0 0 chr11 27862409 27862462 -122921091 + MLT2B3 LTR ERVL 461 513 -2 2069 126 13 31 chr11 27864610 27864928 -122918625 - AluSx SINE Alu 0 312 1 806 163 0 0 chr11 27865257 27865392 -122918161 - FLAM_C SINE Alu 0 143 9 337 313 119 21 chr11 27865469 27865722 -122917831 + L2 LINE L2 2782 3058 -214 697 306 79 9 chr11 27865988 27866217 -122917336 + MIR SINE MIR 10 254 -8 1927 91 8 4 chr11 27867028 27867282 -122916271 - AluSg SINE Alu -7 303 49 831 309 55 36 chr11 27867400 27867619 -122915934 + MLT1I LTR MaLR 18 248 -161 2044 209 41 7 chr11 27867619 27868031 -122915522 + MSTB LTR MaLR 1 426 0 831 309 55 36 chr11 27868031 27868196 -122915357 + MLT1I LTR MaLR 248 409 0 294 267 311 7 chr11 27869424 27869559 -122913994 - MIR SINE MIR -9 253 78 2384 104 3 0 chr11 27869613 27869922 -122913631 - AluSp SINE Alu 0 313 4 1790 266 52 78 chr11 27869953 27870038 -122913515 - MER115 DNA AcHobo -3 690 604 680 228 79 40 chr11 27870038 27870240 -122913313 - MER63A DNA MER1_type 0 210 1 1790 266 52 78 chr11 27870240 27870861 -122912692 - MER115 DNA AcHobo -89 604 2 237 118 0 0 chr11 27871294 27871328 -122912225 - MER115 DNA AcHobo -139 554 521 210 339 32 24 chr11 27871340 27871464 -122912089 + MIR SINE MIR 51 175 -87 16665 187 46 26 chr11 27871591 27878232 -122905321 + L1PA13 LINE L1 18 6800 -14 2646 183 55 7 chr11 27878235 27878725 -122904828 - L1MA9 LINE L1 -13 6299 5775 285 89 0 0 chr11 27878725 27878770 -122904783 + (CA)n Simple_repeat Simple_repeat 2 46 0 2646 183 55 7 chr11 27878770 27878859 -122904694 - L1MA9 LINE L1 -537 5775 5692 2394 134 35 44 chr11 27878859 27879313 -122904240 + L1M2 LINE L1 5076 5530 -761 1974 125 63 41 chr11 27879313 27879680 -122903873 + THE1C LTR MaLR 1 375 0 2394 134 35 44 chr11 27879680 27879853 -122903700 + L1M2 LINE L1 5530 5703 -588 201 74 0 0 chr11 27881382 27881409 -122902144 + (T)n Simple_repeat Simple_repeat 1 27 0 1531 209 38 3 chr11 27882557 27882849 -122900704 - AluJo SINE Alu -10 302 1 26 50 0 0 chr11 27882931 27882971 -122900582 + AT_rich Low_complexity Low_complexity 1 40 0 21 82 0 0 chr11 27883088 27883137 -122900416 + AT_rich Low_complexity Low_complexity 1 49 0 2619 52 0 0 chr11 27883258 27883565 -122899988 - AluY SINE Alu 0 311 5 303 107 0 18 chr11 27883573 27883629 -122899924 - L1PA10 LINE L1 0 6168 6114 * 10833 68 10 23 chr11 27883626 27885868 -122897685 - L1PA7 LINE L1 -27 6127 3921 231 357 6 51 chr11 27886208 27886365 -122897188 + MIR3 SINE MIR 38 187 -21 419 53 40 13 chr11 27886709 27886785 -122896768 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 2540 130 32 81 chr11 27886793 27886968 -122896585 - L1M2 LINE L1 -503 5788 5606 3144 27 11 0 chr11 27886968 27887344 -122896209 - L1PA2 LINE L1 0 6155 5776 2540 130 32 81 chr11 27887344 27887636 -122895917 - L1M2 LINE L1 -685 5606 5332 732 223 0 0 chr11 27887636 27887766 -122895787 - FLAM_A SINE Alu -3 130 1 2540 130 32 81 chr11 27887766 27887860 -122895693 - L1M2 LINE L1 -959 5332 5235 10711 192 34 1 chr11 27887982 27890304 -122893249 - L1 LINE L1 -900 5246 2849 269 314 39 26 chr11 27890655 27890811 -122892742 + L2 LINE L2 2753 2910 -404 700 250 75 0 chr11 27891553 27891753 -122891800 + MER58C DNA MER1_type 1 215 0 253 351 0 13 chr11 27892314 27892391 -122891162 + L2 LINE L2 3155 3230 -42 396 40 0 0 chr11 27892407 27892457 -122891096 + (TG)n Simple_repeat Simple_repeat 1 50 0 204 158 0 0 chr11 27894040 27894078 -122889475 + (TTA)n Simple_repeat Simple_repeat 1 38 0 313 186 43 29 chr11 27894319 27894389 -122889164 + MIR SINE MIR 125 195 -67 2354 104 0 0 chr11 27894475 27894773 -122888780 - AluSg SINE Alu -12 298 1 2262 90 3 3 chr11 27895003 27895303 -122888250 + AluSc SINE Alu 1 300 -9 24 0 0 0 chr11 27896197 27896221 -122887332 + AT_rich Low_complexity Low_complexity 1 24 0 1623 149 23 0 chr11 27896349 27896611 -122886942 + MSTA LTR MaLR 161 428 0 8420 168 26 42 chr11 27896611 27898288 -122885265 + MSTA-int LTR MaLR 1 1651 0 2544 154 19 2 chr11 27898288 27898709 -122884844 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr11 27899221 27899242 -122884311 + AT_rich Low_complexity Low_complexity 1 21 0 183 288 82 14 chr11 27900565 27900638 -122882915 - L3 LINE CR1 -213 1364 1287 2229 86 3 17 chr11 27900775 27901077 -122882476 - AluSc SINE Alu -10 299 2 2610 161 118 53 chr11 27902776 27903451 -122880102 - LTR8A LTR ERV1 0 727 9 22 0 0 0 chr11 27903961 27903983 -122879570 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr11 27904440 27904467 -122879086 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 213 39 0 0 chr11 27904889 27904915 -122878638 + (A)n Simple_repeat Simple_repeat 1 26 0 447 293 0 0 chr11 27905175 27905281 -122878272 + MIR SINE MIR 59 164 -98 5628 165 24 47 chr11 27905450 27905670 -122877883 - L1PB3 LINE L1 -3 6867 6643 1977 103 15 94 chr11 27905670 27905999 -122877554 + AluSx SINE Alu 1 303 -9 5628 165 24 47 chr11 27905999 27908139 -122875414 - L1PB3 LINE L1 -227 6643 4572 3474 221 19 34 chr11 27908151 27909310 -122874243 - L1PB3 LINE L1 -3166 3696 2556 2216 106 0 26 chr11 27909310 27909612 -122873941 + AluY SINE Alu 1 294 -17 3474 221 19 34 chr11 27909612 27909651 -122873902 - L1PB3 LINE L1 -4306 2556 2518 1672 138 138 46 chr11 27909654 27909827 -122873726 + MSTA LTR MaLR 1 157 -271 13494 45 3 1 chr11 27909827 27912290 -122871263 + L1PA5 LINE L1 3680 6151 -3 1672 138 138 46 chr11 27912290 27912508 -122871045 + MSTA LTR MaLR 157 428 0 2744 149 34 2 chr11 27912508 27913003 -122870550 + MSTA-int LTR MaLR 1 511 -1140 1315 127 52 13 chr11 27912997 27913226 -122870327 - THE1-int LTR MaLR -299 1281 1044 * 5634 227 48 22 chr11 27913224 27915831 -122867722 - L1PB3 LINE L1 -5126 1737 6 1087 84 19 0 chr11 27916544 27916699 -122866854 - L1PA7 LINE L1 -2 6152 5995 1434 48 0 0 chr11 27916699 27916885 -122866668 + L1PA7 LINE L1 5794 5979 -175 333 271 163 36 chr11 27916975 27917196 -122866357 + MIR SINE MIR 6 254 -8 576 297 103 19 chr11 27917987 27918250 -122865303 + L2 LINE L2 2374 2658 -656 349 342 52 16 chr11 27918276 27918469 -122865084 - MIR SINE MIR -23 239 40 680 294 17 6 chr11 27918672 27918852 -122864701 - L2 LINE L2 0 3313 3132 * 697 305 41 2 chr11 27918851 27919117 -122864436 - L2 LINE L2 -1833 1481 1147 470 308 76 25 chr11 27919130 27919328 -122864225 - MIR SINE MIR -37 225 18 5066 59 0 2 chr11 27919505 27920258 -122863295 - L1PA6 LINE L1 -232 5922 5171 1389 111 0 0 chr11 27920258 27920457 -122863096 - MSTA LTR MaLR -228 200 2 191 301 126 44 chr11 27920498 27920704 -122862849 + L3 LINE CR1 1349 1571 -6 762 253 63 18 chr11 27920770 27920991 -122862562 + MIR SINE MIR 32 262 0 286 346 138 35 chr11 27921601 27922058 -122861495 + L2 LINE L2 2809 3312 -1 652 335 51 11 chr11 27922254 27922609 -122860944 + LTR16C LTR ERVL 114 482 -9 14512 138 22 6 chr11 27923437 27923774 -122859779 + Tigger1 DNA MER2_type 1 331 -2087 369 0 0 0 chr11 27923774 27923815 -122859738 + (TC)n Simple_repeat Simple_repeat 2 42 0 14512 138 22 6 chr11 27923815 27925855 -122857698 + Tigger1 DNA MER2_type 331 2417 -1 282 361 207 5 chr11 27926934 27927142 -122856411 + MIR SINE MIR 13 262 0 382 266 165 27 chr11 27927160 27927348 -122856205 - MIR SINE MIR -29 233 20 830 205 46 5 chr11 27927363 27927558 -122855995 - MER3 DNA MER1_type -5 204 2 3106 132 136 42 chr11 27928419 27929430 -122854123 - MER11A LTR ERVK 0 1266 1 235 307 0 40 chr11 27931130 27931205 -122852348 - L2 LINE L2 -4 3309 3238 1283 195 161 43 chr11 27932013 27932362 -122851191 - MLT1B LTR MaLR 0 390 1 663 247 101 32 chr11 27932784 27933092 -122850461 + MER102a DNA MER1_type 1 329 -1 446 262 88 47 chr11 27933348 27933541 -122850012 - MIR SINE MIR -49 213 2 182 93 0 47 chr11 27934146 27934189 -122849364 + (TTTTTG)n Simple_repeat Simple_repeat 5 45 0 688 193 32 80 chr11 27934323 27934510 -122849043 - MER5B DNA MER1_type 0 178 1 22 0 0 0 chr11 27936284 27936306 -122847247 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr11 27937228 27937272 -122846281 + AT_rich Low_complexity Low_complexity 1 44 0 215 248 179 43 chr11 27939364 27939481 -122844072 - MIR SINE MIR -14 248 116 24 0 0 0 chr11 27940106 27940130 -122843423 + AT_rich Low_complexity Low_complexity 1 24 0 1356 194 103 6 chr11 27940130 27940470 -122843083 - L1MA9 LINE L1 0 6312 5940 459 342 27 16 chr11 27942313 27942500 -122841053 - MIR3 SINE MIR -17 191 3 304 276 0 0 chr11 27942655 27942731 -122840822 - MLT1L LTR MaLR 0 615 540 449 208 10 30 chr11 27942878 27942979 -122840574 + MIR3 SINE MIR 91 189 -19 372 304 44 39 chr11 27942983 27943164 -122840389 + MER5A DNA MER1_type 7 188 -1 670 150 82 48 chr11 27943224 27943371 -122840182 + MER58C DNA MER1_type 63 214 -1 774 207 18 12 chr11 27943991 27944155 -122839398 - MER3 DNA MER1_type -78 131 14 1883 163 0 0 chr11 27944158 27944459 -122839094 + AluJb SINE Alu 1 301 -11 503 264 31 37 chr11 27944566 27944729 -122838824 + MIR SINE MIR 89 250 -12 758 234 27 5 chr11 27944799 27944983 -122838570 - MER5A DNA MER1_type 0 189 2 516 239 162 60 chr11 27945302 27945536 -122838017 - MER113 DNA MER1_type? -5 516 259 2341 90 3 7 chr11 27945584 27945884 -122837669 + AluSx SINE Alu 1 299 -13 854 232 37 42 chr11 27945901 27946142 -122837411 - MIR SINE MIR -21 241 2 1966 166 61 0 chr11 27946208 27946552 -122837001 - MLT1A1 LTR MaLR 0 365 1 195 100 0 0 chr11 27946591 27946621 -122836932 + (TC)n Simple_repeat Simple_repeat 1 30 0 2376 110 0 0 chr11 27946621 27946931 -122836622 - AluSq SINE Alu -3 310 1 290 254 27 27 chr11 27946966 27947076 -122836477 - MER113 DNA MER1_type? -404 117 8 533 268 49 45 chr11 27947122 27947387 -122836166 - LTR33 LTR ERVL 0 521 256 383 339 56 22 chr11 27947421 27947601 -122835952 - LTR33 LTR ERVL -334 187 2 279 54 0 0 chr11 27948019 27948056 -122835497 + (CAG)n Simple_repeat Simple_repeat 1 37 0 328 356 55 0 chr11 27948228 27948374 -122835179 - MIR SINE MIR -1 261 108 1063 191 76 0 chr11 27948444 27948654 -122834899 + Charlie1a DNA MER1_type 1 226 -1229 245 313 127 52 chr11 27948786 27949006 -122834547 - HAL1b LINE L1 -701 647 445 1969 115 25 7 chr11 27949006 27949292 -122834261 + AluSg SINE Alu 1 291 -19 245 313 127 52 chr11 27949292 27949653 -122833900 - HAL1b LINE L1 -903 445 22 237 33 0 0 chr11 27949949 27949979 -122833574 + (TTG)n Simple_repeat Simple_repeat 1 30 0 20517 63 4 3 chr11 27950780 27953461 -122830092 + L1P LINE L1 578 3261 -2885 427 179 141 0 chr11 27953830 27953908 -122829645 - 5S rRNA rRNA -31 90 2 183 366 98 16 chr11 27955064 27955187 -122828366 - L2 LINE L2 -3 3269 3137 275 374 23 8 chr11 27955428 27955559 -122827994 - MIR SINE MIR -102 160 28 1006 332 46 32 chr11 27956108 27956867 -122826686 + L2 LINE L2 2403 3176 -137 299 73 13 280 chr11 27957186 27957231 -122826322 - L1MB5 LINE L1 0 6174 6194 2318 119 30 0 chr11 27957231 27957601 -122825952 + L1PA16 LINE L1 5777 6157 -9 299 73 13 280 chr11 27957601 27957705 -122825848 - L1MB5 LINE L1 21 6195 6065 352 138 15 0 chr11 27957719 27957784 -122825769 - L1MB5 LINE L1 -62 6112 6047 933 271 104 41 chr11 27957809 27958326 -122825227 + L1MC5 LINE L1 6981 7530 -431 5931 112 14 6 chr11 27958551 27959921 -122823632 + L1PA15 LINE L1 4788 6165 0 3935 235 26 15 chr11 27959926 27960973 -122822580 + L1MB5 LINE L1 4060 5117 -1029 1309 196 4 19 chr11 27960974 27961240 -122822313 + L1MB5 LINE L1 5905 6166 -8 192 40 0 0 chr11 27961862 27961887 -122821666 + (CAA)n Simple_repeat Simple_repeat 2 26 0 349 272 79 0 chr11 27962064 27962084 -122821469 - MLT1H LTR MaLR -2 547 530 3848 68 0 4 chr11 27962084 27962583 -122820970 + L1PA7 LINE L1 5657 6153 -1 349 272 79 0 chr11 27962583 27962676 -122820877 - MLT1H LTR MaLR -19 530 425 775 289 145 13 chr11 27962712 27963023 -122820530 - MLT1H LTR MaLR -195 354 3 300 298 60 42 chr11 27963881 27964049 -122819504 - MIR SINE MIR -46 216 46 213 341 72 30 chr11 27965083 27965250 -122818303 + L2 LINE L2 2712 2885 -429 45 62 0 0 chr11 27965648 27965728 -122817825 + AT_rich Low_complexity Low_complexity 1 80 0 926 284 152 14 chr11 27966272 27966620 -122816933 - MLT1K LTR MaLR -122 466 71 32 0 0 0 chr11 27966681 27966713 -122816840 + AT_rich Low_complexity Low_complexity 1 32 0 1347 245 100 59 chr11 27966930 27967763 -122815790 - L2 LINE L2 0 3313 2458 293 315 54 44 chr11 27968378 27968581 -122814972 + MIR SINE MIR 57 261 -1 1472 174 10 30 chr11 27970623 27970922 -122812631 - AluSx SINE Alu -19 293 1 348 293 13 0 chr11 27971085 27971160 -122812393 - L2 LINE L2 -11 3261 3186 238 294 44 0 chr11 27971226 27971294 -122812259 + MIR3 SINE MIR 89 159 -49 180 327 19 37 chr11 27971747 27971854 -122811699 + L3 LINE CR1 888 992 -585 379 327 102 6 chr11 27972523 27972700 -122810853 + MIR SINE MIR 41 233 -29 2564 55 3 0 chr11 27972763 27973071 -122810482 - AluY SINE Alu -1 310 2 2152 127 0 3 chr11 27974135 27974443 -122809110 - AluSq SINE Alu -6 307 1 360 357 174 22 chr11 27975360 27975682 -122807871 - L2 LINE L2 -1 3271 2901 369 275 163 31 chr11 27975717 27975876 -122807677 + MIR SINE MIR 28 207 -55 378 272 30 49 chr11 27975876 27976057 -122807496 - MER5A DNA MER1_type 0 189 1 190 318 0 30 chr11 27976057 27976116 -122807437 + MIR SINE MIR 202 258 -4 460 343 117 51 chr11 27976130 27976763 -122806790 - L2 LINE L2 -440 2874 2200 297 287 10 30 chr11 27977591 27977692 -122805861 + L2 LINE L2 2925 3023 -249 1576 259 10 13 chr11 27977701 27978094 -122805459 + L1 LINE L1 13 404 -5551 2564 258 101 33 chr11 27978112 27979242 -122804311 + L1 LINE L1 300 1065 -4969 225 0 0 0 chr11 27979242 27979267 -122804286 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2564 258 101 33 chr11 27979267 27980530 -122803023 + L1 LINE L1 1065 2241 -3793 1361 205 3 13 chr11 27980526 27981136 -122802417 + L1 LINE L1 4073 4804 -1230 * 1703 146 41 39 chr11 27981135 27981497 -122802056 + L1MCa LINE L1 882 1244 -5182 5309 135 185 8 chr11 27981505 27982555 -122800998 + MER11B LTR ERVK 1 1236 0 1888 147 27 21 chr11 27982556 27983139 -122800414 + L1MCa LINE L1 1252 1927 -4499 186 43 0 0 chr11 27983567 27983590 -122799963 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 21 82 0 0 chr11 27984663 27984712 -122798841 + AT_rich Low_complexity Low_complexity 1 49 0 452 200 206 17 chr11 27984712 27984887 -122798666 - MER113 DNA MER1_type? -313 208 1 323 306 75 15 chr11 27984889 27985023 -122798530 - MIR SINE MIR -120 142 1 467 300 60 20 chr11 27985201 27985376 -122798177 - MER5A DNA MER1_type -5 184 2 195 360 40 0 chr11 27985754 27985829 -122797724 + L2 LINE L2 3236 3313 0 2939 269 47 37 chr11 27987199 27989005 -122794548 + L1M2a LINE L1 1621 3111 -4058 2177 105 13 3 chr11 27989011 27989316 -122794237 + AluSq SINE Alu 3 310 -3 2263 98 3 0 chr11 27989318 27989624 -122793929 + AluSp SINE Alu 1 307 -6 1564 263 78 73 chr11 27989630 27989951 -122793602 + L1ME LINE L1 78 396 -5684 2154 97 48 0 chr11 27989951 27990241 -122793312 + AluSx SINE Alu 1 304 -8 1564 263 78 73 chr11 27990241 27991506 -122792047 + L1ME LINE L1 396 1646 -4434 1667 206 0 3 chr11 27991506 27991797 -122791756 - AluJo SINE Alu -21 291 2 1564 263 78 73 chr11 27991797 27991855 -122791698 + L1ME LINE L1 1646 1702 -4378 1550 214 125 44 chr11 27991846 27992374 -122791179 + L1ME1 LINE L1 5592 6162 -4 * 3631 53 20 9 chr11 27992757 27993206 -122790347 + L1PA8 LINE L1 5719 6172 0 48 67 0 0 chr11 27993209 27993299 -122790254 + AT_rich Low_complexity Low_complexity 1 90 0 3894 160 61 18 chr11 27993381 27994099 -122789454 + L1MC1 LINE L1 5585 6333 0 287 198 12 37 chr11 27994450 27994531 -122789022 + GA-rich Low_complexity Low_complexity 1 79 0 2912 118 57 0 chr11 27995011 27995416 -122788137 - MSTA LTR MaLR 0 428 1 9472 171 22 24 chr11 27995416 27997069 -122786484 - MSTA-int LTR MaLR 0 1651 1 2705 124 86 0 chr11 27997069 27997463 -122786090 - MSTA LTR MaLR 0 428 1 245 348 79 42 chr11 27997517 27997871 -122785682 + L2 LINE L2 2347 2713 -601 1134 211 14 14 chr11 27998726 27998949 -122784604 - MER58A DNA MER1_type 0 224 2 203 316 59 59 chr11 27999007 27999143 -122784410 - L2 LINE L2 -11 3302 3167 205 383 0 0 chr11 27999165 27999246 -122784307 + L2 LINE L2 3188 3268 -4 2237 204 68 29 chr11 27999510 27999996 -122783557 + MLT1D LTR MaLR 1 505 0 198 284 30 30 chr11 28000602 28000669 -122782884 + MIR3 SINE MIR 105 171 -37 1823 154 48 3 chr11 28001006 28001299 -122782254 - AluJb SINE Alu -6 306 1 24 53 0 0 chr11 28001446 28001484 -122782069 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr11 28002009 28002031 -122781522 + AT_rich Low_complexity Low_complexity 1 22 0 14845 47 6 0 chr11 28002073 28003875 -122779678 - L1P LINE L1 -3711 2435 623 796 43 0 0 chr11 28003873 28003965 -122779588 - L1P LINE L1 -6048 98 7 * 1102 119 57 23 chr11 28003970 28004147 -122779406 - MLT2A1 LTR ERVL -82 362 180 927 105 0 23 chr11 28004859 28004992 -122778561 - AluY SINE Alu -181 130 1 198 128 0 0 chr11 28005359 28005398 -122778155 + (TG)n Simple_repeat Simple_repeat 2 40 0 2275 105 3 3 chr11 28005720 28006025 -122777528 - AluSq SINE Alu -8 305 1 1009 234 120 58 chr11 28006667 28007228 -122776325 + MLT1H1 LTR MaLR 1 553 -2 1590 158 53 3 chr11 28007546 28007830 -122775723 + L1MD3 LINE L1 6725 7022 -973 327 229 237 0 chr11 28007879 28007997 -122775556 - MIR SINE MIR 0 262 117 515 347 59 9 chr11 28008739 28008961 -122774592 - MIR SINE MIR -10 252 20 572 268 101 31 chr11 28009240 28009263 -122774290 - MIR SINE MIR -4 258 238 1315 218 114 61 chr11 28009263 28009639 -122773914 + MSTD LTR MaLR 1 396 0 572 268 101 31 chr11 28009639 28009843 -122773710 - MIR SINE MIR -24 238 15 2328 103 0 0 chr11 28010130 28010430 -122773123 + AluSc SINE Alu 1 300 -9 2037 140 3 7 chr11 28010875 28011183 -122772370 + AluSx SINE Alu 6 312 0 206 357 0 12 chr11 28011279 28011363 -122772190 - L3 LINE CR1 -1 1576 1494 1895 145 10 10 chr11 28011517 28011821 -122771732 + AluJb SINE Alu 1 304 -8 425 186 32 57 chr11 28011823 28011947 -122771606 + MER103 DNA DNA 3 123 -43 797 233 49 22 chr11 28012269 28012492 -122771061 - MLT1H1 LTR MaLR 0 555 327 1539 242 37 5 chr11 28012595 28013000 -122770553 - L1MD3 LINE L1 -10 7985 7568 525 240 103 26 chr11 28013006 28013200 -122770353 - MLT1H1 LTR MaLR -290 259 10 2250 113 23 0 chr11 28013423 28013724 -122769829 + AluJb SINE Alu 1 308 -4 782 351 30 15 chr11 28013757 28014093 -122769460 + LTR16B LTR ERVL 44 384 -80 1771 109 29 0 chr11 28014109 28014383 -122769170 - L1MA6 LINE L1 0 6300 6019 2741 148 62 27 chr11 28014485 28014540 -122769013 - L1MA6 LINE L1 -292 5999 5945 1691 195 14 126 chr11 28014540 28014974 -122768579 - L1PA16 LINE L1 -242 5924 5600 5657 144 25 21 chr11 28014974 28016152 -122767401 - L1PA16 LINE L1 -13 6153 4959 1691 195 14 126 chr11 28016152 28016369 -122767184 - L1PA16 LINE L1 -566 5600 5360 447 216 0 10 chr11 28016369 28016466 -122767087 + LTR16B LTR ERVL 369 464 0 290 45 23 0 chr11 28016640 28016684 -122766869 + (TTA)n Simple_repeat Simple_repeat 3 47 0 3794 27 0 0 chr11 28016684 28017098 -122766455 - L1PA4 LINE L1 -18 6137 5724 787 11 0 0 chr11 28017098 28017192 -122766361 + L1P1 LINE L1 5338 5431 -724 194 250 0 0 chr11 28017575 28017623 -122765930 + L2 LINE L2 2652 2699 -615 2002 236 60 38 chr11 28017925 28018538 -122765015 + HsTC2 DNA Tc2 1272 1898 0 334 335 95 92 chr11 28018558 28018916 -122764637 + L2 LINE L2 2914 3272 0 189 107 0 0 chr11 28018994 28019022 -122764531 - MIR SINE MIR -121 141 114 601 281 72 25 chr11 28019087 28019322 -122764231 - MIR SINE MIR -3 259 14 1584 142 22 36 chr11 28019415 28019690 -122763863 + L1PA16 LINE L1 5894 6164 -2 417 273 58 36 chr11 28019803 28019942 -122763611 + MIR3 SINE MIR 16 157 -51 263 267 267 7 chr11 28020767 28020902 -122762651 + MIR SINE MIR 79 248 -14 1885 165 0 7 chr11 28020911 28021208 -122762345 + AluJo SINE Alu 1 295 -17 1494 28 0 39 chr11 28021486 28021665 -122761888 - L1PA4 LINE L1 -3 6152 5981 4537 30 2 0 chr11 28021766 28022418 -122761135 - L1PA4 LINE L1 -641 5514 4861 557 256 139 6 chr11 28022570 28022742 -122760811 + MIR SINE MIR 19 213 -49 248 354 38 0 chr11 28022820 28022899 -122760654 - MIR SINE MIR -110 98 17 189 315 70 70 chr11 28024169 28024426 -122759127 + L2 LINE L2 3034 3290 -23 312 339 51 8 chr11 28024830 28024948 -122758605 + MIR SINE MIR 16 138 -70 2148 104 4 0 chr11 28025613 28025920 -122757633 - AluSx SINE Alu 0 308 1 296 353 42 0 chr11 28026686 28026818 -122756735 + MIR SINE MIR 21 156 -64 365 58 19 0 chr11 28027130 28027182 -122756371 + (CTATT)n Simple_repeat Simple_repeat 2 54 0 2077 130 7 0 chr11 28027183 28027482 -122756071 - AluSx SINE Alu -9 303 3 858 90 14 14 chr11 28027768 28027912 -122755641 + (GAAA)n Simple_repeat Simple_repeat 1 144 0 948 259 40 27 chr11 28027928 28028229 -122755324 + L1ME1 LINE L1 5858 6162 -4 23 0 0 0 chr11 28028316 28028339 -122755214 + AT_rich Low_complexity Low_complexity 1 23 0 259 224 212 12 chr11 28028405 28028490 -122755063 - MER5A DNA MER1_type -80 109 8 257 267 137 43 chr11 28028558 28028719 -122754834 - MER117 DNA MER1_type -5 192 17 533 247 52 26 chr11 28029000 28029154 -122754399 + MIR SINE MIR 89 246 -16 2207 124 0 9 chr11 28029221 28029536 -122754017 + AluSx SINE Alu 1 312 0 187 300 78 0 chr11 28029618 28029708 -122753845 + MIR3 SINE MIR 101 197 -11 309 263 102 36 chr11 28030619 28030756 -122752797 + MER117 DNA MER1_type 52 197 0 271 255 5 0 chr11 28030774 28030851 -122752702 - MIR SINE MIR -67 141 78 1074 265 93 52 chr11 28031186 28031590 -122751963 - L1ME3A LINE L1 -219 5951 5565 713 216 57 101 chr11 28031590 28031817 -122751736 + MER20 DNA MER1_type 1 217 -2 1074 265 93 52 chr11 28031817 28032485 -122751068 - L1ME3A LINE L1 -605 5565 4960 629 277 77 0 chr11 28033108 28033303 -122750250 - MER63A DNA MER1_type 0 210 1 1018 289 71 44 chr11 28033513 28034243 -122749310 + L2 LINE L2 2568 3313 0 231 36 0 0 chr11 28034787 28034815 -122748738 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2066 127 6 22 chr11 28034862 28035178 -122748375 - AluSp SINE Alu -2 311 1 835 50 0 0 chr11 28035420 28035521 -122748032 + L1PB1 LINE L1 6051 6151 0 1729 295 132 21 chr11 28035970 28036020 -122747533 + L2 LINE L2 1940 1983 -1331 2383 90 0 7 chr11 28036020 28036330 -122747223 - AluSg SINE Alu -2 308 1 1729 295 132 21 chr11 28036330 28037150 -122746403 + L2 LINE L2 1983 2907 -407 335 211 28 0 chr11 28037614 28037685 -122745868 + MIR SINE MIR 79 151 -111 1877 131 11 14 chr11 28038575 28038877 -122744676 - AluSx SINE Alu 0 301 1 29 0 0 0 chr11 28039141 28039170 -122744383 + AT_rich Low_complexity Low_complexity 1 29 0 224 178 0 44 chr11 28039945 28039990 -122743563 + polypyrimidine Low_complexity Low_complexity 3 45 0 24 32 0 0 chr11 28040494 28040525 -122743028 + AT_rich Low_complexity Low_complexity 1 31 0 462 307 135 8 chr11 28041148 28041415 -122742138 + L1MC/D LINE L1 5498 5798 -2010 280 326 67 34 chr11 28042492 28042670 -122740883 + MIR SINE MIR 17 200 -62 246 160 0 0 chr11 28043373 28043423 -122740130 + CT-rich Low_complexity Low_complexity 2 51 0 441 0 0 0 chr11 28043429 28043478 -122740075 + (CA)n Simple_repeat Simple_repeat 2 50 0 235 274 82 0 chr11 28044320 28044393 -122739160 + MIR SINE MIR 47 125 -137 24 67 0 0 chr11 28044807 28044852 -122738701 + AT_rich Low_complexity Low_complexity 1 45 0 358 264 141 62 chr11 28045992 28046219 -122737334 - HAL1 LINE L1 -1649 858 614 549 288 103 32 chr11 28046457 28046797 -122736756 + L2 LINE L2 2950 3313 0 205 309 0 0 chr11 28046802 28046857 -122736696 - L2 LINE L2 0 3272 3218 234 0 0 0 chr11 28046944 28046970 -122736583 + (CA)n Simple_repeat Simple_repeat 1 26 0 222 300 12 12 chr11 28047909 28047989 -122735564 - MIR SINE MIR -9 253 174 2415 105 0 0 chr11 28048279 28048585 -122734968 + AluSq SINE Alu 1 306 -7 2396 224 55 32 chr11 28048722 28049290 -122734263 + MLT1E LTR MaLR 13 593 0 2210 114 0 10 chr11 28049766 28050064 -122733489 - AluSq SINE Alu -18 295 1 499 297 108 0 chr11 28050123 28050355 -122733198 - MIR SINE MIR 0 262 6 476 283 81 39 chr11 28050358 28050792 -122732761 - L1ME4a LINE L1 -30 6091 5588 595 251 28 11 chr11 28051510 28051689 -122731864 - MIR SINE MIR -3 259 78 1948 205 37 60 chr11 28051842 28052289 -122731264 + MLT1D LTR MaLR 1 436 -69 1654 151 92 0 chr11 28052289 28052560 -122730993 - AluSx SINE Alu -16 296 1 1948 205 37 60 chr11 28052560 28052629 -122730924 + MLT1D LTR MaLR 436 505 0 2552 149 17 2 chr11 28053116 28053526 -122730027 + MSTB1 LTR MaLR 15 430 -2 294 179 18 0 chr11 28054447 28054503 -122729050 + LTR67 LTR ERVL 101 157 -400 276 222 0 0 chr11 28054460 28054514 -122729039 + MLT1J LTR MaLR 110 163 -348 * 509 265 99 99 chr11 28054517 28054909 -122728644 + MLT1L LTR MaLR 216 607 -8 2378 92 0 7 chr11 28055682 28055985 -122727568 - AluSq SINE Alu -12 301 1 230 200 0 50 chr11 28056107 28056187 -122727366 + T-rich Low_complexity Low_complexity 3 78 0 233 336 132 43 chr11 28056282 28056517 -122727036 + L2 LINE L2 3017 3272 0 1735 187 7 3 chr11 28056730 28057029 -122726524 + AluJo SINE Alu 1 300 -12 193 258 135 22 chr11 28057051 28057140 -122726413 + MIR SINE MIR 164 262 0 212 253 169 36 chr11 28058015 28058181 -122725372 - MIR SINE MIR -54 208 21 811 255 100 4 chr11 28058390 28058621 -122724932 + MIR SINE MIR 5 257 -5 339 253 11 0 chr11 28058660 28058755 -122724798 - MIR SINE MIR -109 153 58 290 329 36 21 chr11 28059417 28059557 -122723996 - L2 LINE L2 -1 3312 3171 201 213 21 0 chr11 28059928 28059975 -122723578 + (TA)n Simple_repeat Simple_repeat 1 48 0 243 0 0 0 chr11 28059983 28060010 -122723543 + (CA)n Simple_repeat Simple_repeat 2 28 0 420 284 97 7 chr11 28060022 28060177 -122723376 - MIR SINE MIR -77 185 17 753 253 18 31 chr11 28060350 28060579 -122722974 - MIR SINE MIR -25 237 12 245 262 90 41 chr11 28061827 28061949 -122721604 + MIR SINE MIR 20 147 -115 636 271 59 0 chr11 28062481 28062705 -122720848 - MIR SINE MIR -6 256 21 345 331 12 41 chr11 28062870 28063042 -122720511 + MIR3 SINE MIR 39 205 -3 187 286 71 0 chr11 28063042 28063098 -122720455 - MIR SINE MIR -3 259 200 623 301 25 13 chr11 28063148 28063384 -122720169 - MIR SINE MIR -17 245 7 2514 75 14 104 chr11 28064276 28064690 -122718863 + MER51B LTR ERV1 1 377 0 331 331 0 32 chr11 28065033 28065187 -122718366 + MIR SINE MIR 28 176 -86 43658 36 21 1 chr11 28065190 28071219 -122712334 + L1PA2 LINE L1 4 6155 0 436 354 31 9 chr11 28071775 28072004 -122711549 + MIR SINE MIR 13 246 -16 2043 153 29 6 chr11 28072006 28072353 -122711200 - THE1A LTR MaLR 0 355 1 4197 201 77 61 chr11 28123110 28124698 -122658855 - MER52A LTR ERV1 0 1755 2 316 347 8 8 chr11 28124768 28124889 -122658664 + L1MEd LINE L1 543 663 -5456 1664 284 23 6 chr11 28124962 28125487 -122658066 + L1ME LINE L1 36 569 -5827 543 220 49 2 chr11 28125485 28125655 -122657898 + L1ME2 LINE L1 5784 5962 -200 * 587 205 8 0 chr11 28125747 28125869 -122657684 + L1MA10 LINE L1 6205 6327 -7 443 254 138 5 chr11 28125949 28126166 -122657387 + L1ME LINE L1 4015 4260 -1955 25 65 0 0 chr11 28126371 28126417 -122657136 + AT_rich Low_complexity Low_complexity 1 46 0 980 291 79 22 chr11 28126440 28127517 -122656036 + L1ME LINE L1 4580 5718 -521 260 187 133 120 chr11 28127630 28127780 -122655773 - MER112 DNA MER1_type -106 154 3 380 262 60 18 chr11 28127782 28127950 -122655603 + L1ME LINE L1 5718 5892 -347 508 263 29 0 chr11 28127951 28128122 -122655431 + L1ME3A LINE L1 5776 5951 -219 2404 57 0 16 chr11 28128288 28128603 -122654950 - AluY SINE Alu -1 310 1 659 215 89 141 chr11 28129344 28129402 -122654151 + MLT1J LTR MaLR 11 70 -441 1694 176 29 4 chr11 28129402 28129701 -122653852 - AluJb SINE Alu 0 306 1 659 215 89 141 chr11 28129701 28130125 -122653428 + MLT1J LTR MaLR 70 469 -42 273 331 25 32 chr11 28130576 28130733 -122652820 + L2 LINE L2 2903 3058 -214 381 292 9 0 chr11 28130917 28131030 -122652523 + MIR SINE MIR 129 242 -20 228 135 0 0 chr11 28131776 28131813 -122651740 + (TG)n Simple_repeat Simple_repeat 2 38 0 485 202 243 29 chr11 28132429 28132602 -122650951 + MIR SINE MIR 53 262 0 478 315 101 5 chr11 28132572 28132791 -122650762 - MIR SINE MIR -21 241 2 * 434 204 21 11 chr11 28132815 28132908 -122650645 + MIR SINE MIR 83 176 -86 21 57 0 0 chr11 28135022 28135057 -122648496 + AT_rich Low_complexity Low_complexity 1 35 0 371 312 16 26 chr11 28135242 28135431 -122648122 - MER5A DNA MER1_type 0 189 3 28 48 0 0 chr11 28136214 28136256 -122647297 + AT_rich Low_complexity Low_complexity 1 42 0 1905 93 4 30 chr11 28136407 28136675 -122646878 + AluSx SINE Alu 34 294 -18 2581 159 8 8 chr11 28136824 28137295 -122646258 + L1MB5 LINE L1 5702 6172 -2 799 286 63 0 chr11 28137321 28137573 -122645980 - Charlie8 DNA MER1_type -2146 271 4 924 182 41 82 chr11 28138180 28138499 -122645054 - L1MD3 LINE L1 -14 7981 7676 585 217 36 39 chr11 28138474 28138736 -122644817 - L1MC4a LINE L1 -1449 6359 6083 * 1668 170 39 26 chr11 28138851 28139157 -122644396 + AluJo SINE Alu 1 310 -2 191 372 104 11 chr11 28140390 28140573 -122642980 + L2 LINE L2 1983 2182 -1132 193 305 0 17 chr11 28140705 28140764 -122642789 + L3 LINE CR1 1518 1575 -2 213 340 68 68 chr11 28141084 28141290 -122642263 - L2 LINE L2 -339 2975 2770 302 327 68 12 chr11 28141563 28141725 -122641828 - L2 LINE L2 -580 2734 2564 298 195 356 8 chr11 28141750 28141868 -122641685 - MER5B DNA MER1_type 0 178 20 649 166 55 43 chr11 28142867 28143030 -122640523 - MER97a DNA MER1_type? -729 165 1 1554 255 42 5 chr11 28143232 28143679 -122639874 + LTR16B LTR ERVL 1 464 0 35049 83 8 10 chr11 28143713 28145051 -122638502 + L1PA6 LINE L1 174 1513 -4641 2369 60 40 0 chr11 28145051 28145350 -122638203 + AluY SINE Alu 1 311 0 35049 83 8 10 chr11 28145350 28150010 -122633543 + L1PA6 LINE L1 1513 6154 0 615 278 64 0 chr11 28150240 28150413 -122633140 - MIR SINE MIR -13 249 66 2294 97 0 0 chr11 28150420 28150718 -122632835 - AluSq SINE Alu -15 298 1 5844 110 10 10 chr11 28151751 28152918 -122630635 - L1PA16 LINE L1 0 6166 5005 388 346 94 10 chr11 28153384 28153586 -122629967 + L2 LINE L2 3012 3230 -42 359 299 0 68 chr11 28154034 28154241 -122629312 + HAL1 LINE L1 5 197 -2310 348 293 105 8 chr11 28154260 28154393 -122629160 - HAL1 LINE L1 -1497 1010 865 1106 237 105 82 chr11 28154587 28155274 -122628279 + HAL1 LINE L1 606 1308 -1199 283 159 29 14 chr11 28155319 28155388 -122628165 + HAL1 LINE L1 2431 2500 -7 1908 150 3 42 chr11 28155515 28155822 -122627731 - AluJo SINE Alu -17 295 1 2204 265 114 124 chr11 28156053 28156338 -122627215 + L2 LINE L2 444 730 -2584 788 220 18 0 chr11 28156338 28156506 -122627047 - FAM SINE Alu -4 171 1 2204 265 114 124 chr11 28156506 28157389 -122626164 + L2 LINE L2 730 1620 -1694 2224 77 19 39 chr11 28157389 28157699 -122625854 - AluSq SINE Alu -9 304 1 2204 265 114 124 chr11 28157699 28158890 -122624663 + L2 LINE L2 1620 2780 -534 632 26 13 0 chr11 28159544 28159646 -122623907 - AluSg/x SINE Alu 0 308 206 21 0 0 0 chr11 28159660 28159681 -122623872 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 28159725 28159747 -122623806 + AT_rich Low_complexity Low_complexity 1 22 0 694 196 0 8 chr11 28159890 28160023 -122623530 - FLAM_C SINE Alu -1 132 1 2347 94 3 3 chr11 28160059 28160368 -122623185 + AluSc SINE Alu 1 309 0 1204 165 0 46 chr11 28160449 28160667 -122622886 + AluJo SINE Alu 87 294 -18 26 0 0 0 chr11 28160673 28160699 -122622854 + AT_rich Low_complexity Low_complexity 1 26 0 265 259 6 62 chr11 28163804 28163966 -122619587 + T-rich Low_complexity Low_complexity 4 156 0 393 309 29 43 chr11 28164142 28164250 -122619303 + L2 LINE L2 3134 3241 -31 2021 109 103 32 chr11 28164250 28164590 -122618963 + THE1B LTR MaLR 1 364 0 393 309 29 43 chr11 28164590 28164620 -122618933 + L2 LINE L2 3241 3270 -2 352 265 8 34 chr11 28164683 28164800 -122618753 - L1MC4 LINE L1 -1316 6726 6613 * 357 267 0 0 chr11 28164717 28164807 -122618746 + L1MC4 LINE L1 6614 6703 -1339 866 248 5 33 chr11 28164969 28165183 -122618370 + MER58A DNA MER1_type 2 209 -15 2321 91 0 3 chr11 28165535 28165831 -122617722 + AluSx SINE Alu 5 299 -13 252 391 9 0 chr11 28165976 28166086 -122617467 - L3 LINE CR1 -7 1570 1460 736 258 50 0 chr11 28166099 28166281 -122617272 - MIR SINE MIR -1 261 71 336 274 29 115 chr11 28166281 28166690 -122616863 + L1ME1 LINE L1 3313 3686 -2460 206 258 24 48 chr11 28166732 28166856 -122616697 + (CATATA)n Simple_repeat Simple_repeat 6 126 0 27 0 0 0 chr11 28166950 28166977 -122616576 + AT_rich Low_complexity Low_complexity 1 27 0 1961 220 61 54 chr11 28167006 28167700 -122615853 + L1ME1 LINE L1 4394 5095 -1051 6488 23 0 0 chr11 28167700 28168448 -122615105 - L1PA4 LINE L1 -3 6152 5405 1961 220 61 54 chr11 28168448 28168544 -122615009 + L1ME1 LINE L1 5095 5189 -957 1562 124 5 0 chr11 28168599 28168816 -122614737 + AluSg/x SINE Alu 74 291 -21 418 131 36 0 chr11 28168836 28168920 -122614633 + GA-rich Low_complexity Low_complexity 4 90 0 385 223 86 0 chr11 28168920 28169059 -122614494 + L1ME1 LINE L1 5188 5338 -808 2759 182 52 72 chr11 28169100 28169128 -122614425 + L1ME1 LINE L1 5349 5376 -958 1760 140 79 50 chr11 28169128 28169507 -122614046 + MLT1B LTR MaLR 1 390 0 2759 182 52 72 chr11 28169507 28170326 -122613227 + L1ME1 LINE L1 5376 6334 0 283 189 0 0 chr11 28170619 28170672 -122612881 + L2 LINE L2 3261 3313 0 28 29 0 0 chr11 28170767 28170802 -122612751 + AT_rich Low_complexity Low_complexity 1 35 0 183 80 0 0 chr11 28171212 28171237 -122612316 + (A)n Simple_repeat Simple_repeat 1 25 0 382 248 85 23 chr11 28172126 28172255 -122611298 - L2 LINE L2 -5 3308 3172 2069 146 3 0 chr11 28174519 28174821 -122608732 + AluSx SINE Alu 9 311 -1 348 301 26 9 chr11 28174832 28174945 -122608608 - L1MC4 LINE L1 -1318 6724 6610 37 23 0 0 chr11 28175863 28175907 -122607646 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr11 28176018 28176048 -122607505 + AT_rich Low_complexity Low_complexity 1 30 0 226 289 89 44 chr11 28176267 28176357 -122607196 + MIR SINE MIR 34 127 -81 581 218 184 0 chr11 28176847 28176994 -122606559 - MIR SINE MIR -71 191 18 1441 148 72 48 chr11 28176995 28177285 -122606268 + AluJb SINE Alu 3 299 -13 449 276 16 24 chr11 28177336 28177459 -122606094 - MIR SINE MIR -124 138 17 228 254 0 0 chr11 28177718 28177777 -122605776 + (TA)n Simple_repeat Simple_repeat 2 60 0 415 264 86 7 chr11 28177979 28178119 -122605434 - MIR SINE MIR -55 207 57 2341 98 10 0 chr11 28178418 28178725 -122604828 - AluSp SINE Alu -3 310 1 29 60 0 0 chr11 28178796 28178846 -122604707 + AT_rich Low_complexity Low_complexity 1 50 0 444 116 0 0 chr11 28179273 28179359 -122604194 + (GGGTG)n Simple_repeat Simple_repeat 4 89 0 24 0 0 0 chr11 28179729 28179753 -122603800 + AT_rich Low_complexity Low_complexity 1 24 0 920 164 188 0 chr11 28179834 28180041 -122603512 + L1MD3 LINE L1 7741 7986 -9 539 161 107 0 chr11 28180056 28180168 -122603385 + L1MC1 LINE L1 5900 6023 -310 3210 62 14 0 chr11 28180190 28180611 -122602942 - MLT2A2 LTR ERVL -26 427 1 1137 164 63 34 chr11 28180611 28180849 -122602704 + L1MC1 LINE L1 6081 6325 -8 270 244 13 26 chr11 28181513 28181591 -122601962 - L2 LINE L2 -18 3254 3178 309 258 129 0 chr11 28181635 28181728 -122601825 - MIR SINE MIR -36 226 122 297 347 31 0 chr11 28181792 28181890 -122601663 + MIR SINE MIR 14 114 -148 586 306 22 22 chr11 28182003 28182232 -122601321 - MIR SINE MIR -31 231 3 180 0 0 0 chr11 28182757 28182777 -122600776 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 367 355 111 21 chr11 28184450 28184684 -122598869 + MIR SINE MIR 2 256 -6 1964 158 10 3 chr11 28184999 28185309 -122598244 + AluJb SINE Alu 1 312 0 240 57 94 19 chr11 28185318 28185371 -122598182 + GA-rich Low_complexity Low_complexity 3 59 0 210 190 0 35 chr11 28185557 28185615 -122597938 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 23 0 0 0 chr11 28186227 28186250 -122597303 + AT_rich Low_complexity Low_complexity 1 23 0 194 284 149 50 chr11 28186540 28186681 -122596872 + MIR SINE MIR 103 257 -5 * 550 217 39 23 chr11 28186658 28186787 -122596766 - MIR SINE MIR -50 212 82 1757 191 14 20 chr11 28186808 28187165 -122596388 + MLT1A1 LTR MaLR 5 359 -6 2219 129 21 21 chr11 28187258 28187631 -122595922 + THE1C LTR MaLR 1 373 -2 822 264 5 10 chr11 28187742 28187950 -122595603 - LTR33 LTR ERVL -271 250 44 1740 76 5 5 chr11 28188204 28188427 -122595126 + AluSp SINE Alu 1 223 -90 366 270 30 10 chr11 28188427 28188527 -122595026 - LTR33 LTR ERVL -366 155 54 461 65 65 0 chr11 28188571 28188648 -122594905 + AluSp SINE Alu 228 309 -4 203 194 0 0 chr11 28189003 28189039 -122594514 + (TTA)n Simple_repeat Simple_repeat 2 37 0 603 151 50 0 chr11 28189696 28189815 -122593738 - L1MA9 LINE L1 -38 6274 6150 2233 128 50 39 chr11 28189928 28190288 -122593265 + THE1B LTR MaLR 1 364 0 1980 169 156 5 chr11 28190393 28190765 -122592788 - MSTA LTR MaLR 0 428 1 768 303 36 0 chr11 28191264 28191485 -122592068 + L2 LINE L2 2615 2843 -471 * 799 265 23 18 chr11 28191464 28191683 -122591870 + L2 LINE L2 3092 3311 -2 261 294 15 0 chr11 28192380 28192448 -122591105 + MIR SINE MIR 48 116 -92 453 217 66 9 chr11 28192449 28192555 -122590998 + L2 LINE L2 3199 3310 -3 287 326 56 0 chr11 28192938 28193027 -122590526 + MIR3 SINE MIR 86 179 -29 440 275 86 57 chr11 28193168 28193602 -122589951 - MLT1H1 LTR MaLR -24 531 30 2419 131 95 8 chr11 28193669 28194059 -122589494 - MSTA LTR MaLR 0 428 5 4137 163 82 15 chr11 28194595 28195116 -122588437 + L1PA13 LINE L1 4776 5260 -903 202 56 56 0 chr11 28195116 28195152 -122588401 + A-rich Low_complexity Low_complexity 3 40 0 4137 163 82 15 chr11 28195152 28195920 -122587633 + L1PA13 LINE L1 5260 6152 -11 630 252 29 33 chr11 28195988 28196017 -122587536 - MIR SINE MIR -41 221 193 3031 107 12 16 chr11 28196017 28196447 -122587106 - MSTA LTR MaLR 0 428 1 630 252 29 33 chr11 28196447 28196610 -122586943 - MIR SINE MIR -69 193 31 204 289 0 0 chr11 28196598 28196650 -122586903 - L2 LINE L2 0 3272 3221 * 202 333 0 0 chr11 28198591 28198663 -122584890 - L2 LINE L2 -954 2360 2289 550 307 0 22 chr11 28198784 28198963 -122584590 + L3 LINE CR1 639 813 -764 411 262 0 9 chr11 28198964 28199071 -122584482 + L3 LINE CR1 1183 1288 -289 1016 278 81 49 chr11 28199177 28199342 -122584211 - L2 LINE L2 -1 3312 3154 2214 104 0 7 chr11 28199342 28199639 -122583914 + AluSx SINE Alu 1 295 -17 1016 278 81 49 chr11 28199639 28200216 -122583337 - L2 LINE L2 -159 3154 2536 260 275 14 99 chr11 28200808 28200950 -122582603 + L2 LINE L2 2672 2801 -513 436 236 63 24 chr11 28200950 28201077 -122582476 - MER94 DNA DNA 0 134 3 259 300 115 0 chr11 28201116 28201246 -122582307 + L2 LINE L2 2829 2973 -340 204 40 0 0 chr11 28201270 28201295 -122582258 + (TCC)n Simple_repeat Simple_repeat 1 25 0 189 147 0 0 chr11 28201638 28201672 -122581881 + (TA)n Simple_repeat Simple_repeat 1 34 0 449 163 31 108 chr11 28201721 28201810 -122581743 - L1MB8 LINE L1 -167 5995 5920 2007 97 3 88 chr11 28201810 28202130 -122581423 + AluSg1 SINE Alu 1 293 -16 449 163 31 108 chr11 28202130 28202187 -122581366 - L1MB8 LINE L1 -242 5920 5860 32794 95 5 11 chr11 28202196 28207940 -122575613 - L1PA7 LINE L1 0 6469 739 536 273 78 75 chr11 28207943 28208043 -122575510 - MARNA DNA Mariner -154 432 334 1569 169 29 7 chr11 28208043 28208351 -122575202 - AluJb SINE Alu 0 314 1 536 273 78 75 chr11 28208351 28208608 -122574945 - MARNA DNA Mariner -252 334 73 289 215 31 0 chr11 28209920 28209985 -122573568 + MER112 DNA MER1_type 7 73 -187 209 265 6 161 chr11 28210239 28210401 -122573152 - MIR3 SINE MIR -54 154 18 986 193 34 42 chr11 28210464 28210703 -122572850 + MLT1A2 LTR MaLR 138 374 0 207 274 20 0 chr11 28210914 28210965 -122572588 + L2 LINE L2 3209 3260 -12 304 303 156 18 chr11 28211023 28211132 -122572421 + L2 LINE L2 3139 3262 -10 414 274 19 13 chr11 28211597 28211754 -122571799 + L1ME4a LINE L1 5960 6117 -4 279 357 7 0 chr11 28211770 28211910 -122571643 + L2 LINE L2 2359 2499 -815 1089 203 0 24 chr11 28211942 28212149 -122571404 - MLT1A2 LTR MaLR 0 374 173 616 201 238 73 chr11 28212177 28212503 -122571050 - MLT1G1 LTR MaLR -29 521 161 578 211 32 68 chr11 28212505 28212695 -122570858 - L1MC5 LINE L1 -600 7361 7179 395 206 141 0 chr11 28213529 28213621 -122569932 - MER5A DNA MER1_type -77 112 8 203 330 87 17 chr11 28214058 28214173 -122569380 - MIR SINE MIR -75 187 65 492 234 120 25 chr11 28214420 28214578 -122568975 + MIR SINE MIR 90 262 0 1925 137 22 29 chr11 28214859 28215173 -122568380 - AluSx SINE Alu 0 312 1 258 353 0 39 chr11 28215223 28215379 -122568174 - MIR SINE MIR -46 216 67 294 164 45 15 chr11 28215446 28215513 -122568040 + MER116 DNA Mariner 12 80 0 367 308 122 6 chr11 28215517 28215689 -122567864 - MIR SINE MIR -58 204 13 566 310 49 5 chr11 28215793 28215977 -122567576 - MIR SINE MIR -60 202 11 637 216 72 7 chr11 28215991 28216130 -122567423 + MER5B DNA MER1_type 31 178 0 942 262 125 44 chr11 28217803 28218748 -122564805 - L1MEd LINE L1 -978 5151 4131 1899 131 98 12 chr11 28218830 28219050 -122564503 + L1PA16 LINE L1 5810 6069 -97 2063 92 0 0 chr11 28219050 28219310 -122564243 + AluSc SINE Alu 37 296 -13 1899 131 98 12 chr11 28219310 28219417 -122564136 + L1PA16 LINE L1 6069 6165 -1 342 191 108 102 chr11 28219455 28219612 -122563941 - L1MEd LINE L1 -2126 4003 3846 269 255 169 58 chr11 28219831 28220074 -122563479 - L1MEd LINE L1 -2605 3524 3255 245 312 104 35 chr11 28220333 28220603 -122562950 + LTR16A LTR ERVL 166 457 0 501 260 43 95 chr11 28220611 28220831 -122562722 - L1MEd LINE L1 -2962 3167 2966 1984 111 9 22 chr11 28220831 28221146 -122562407 - AluSx SINE Alu 0 312 2 501 260 43 95 chr11 28221146 28221229 -122562324 - L1MEd LINE L1 -3163 2966 2880 679 318 52 10 chr11 28221229 28221570 -122561983 + MLT1I LTR MaLR 1 408 -1 300 309 23 57 chr11 28221611 28221647 -122561906 - L1MEd LINE L1 -3279 2850 2814 2416 69 10 7 chr11 28221647 28221950 -122561603 - AluSp SINE Alu -9 304 1 300 309 23 57 chr11 28221950 28222088 -122561465 - L1MEd LINE L1 -3315 2814 2682 236 236 13 191 chr11 28222333 28222490 -122561063 - L1MEd LINE L1 -5510 609 481 27 0 0 26 chr11 28222837 28222861 -122560692 + AT_rich Low_complexity Low_complexity 1 24 -13 201 39 0 0 chr11 28222861 28222887 -122560666 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1988 136 14 0 chr11 28222887 28223169 -122560384 - AluSx SINE Alu -26 286 1 27 0 0 26 chr11 28223169 28223186 -122560367 + AT_rich Low_complexity Low_complexity 22 37 0 493 328 150 12 chr11 28223846 28224093 -122559460 + L2 LINE L2 2992 3272 0 625 247 44 85 chr11 28225103 28225215 -122558338 + MIR SINE MIR 11 126 -136 2667 103 41 0 chr11 28225215 28225556 -122557997 - LTR18A LTR ERVL 0 357 3 625 247 44 85 chr11 28225556 28225690 -122557863 + MIR SINE MIR 126 249 -13 469 314 159 14 chr11 28226626 28226846 -122556707 + L3 LINE CR1 1303 1554 -23 1859 127 84 0 chr11 28227218 28227502 -122556051 + AluSx SINE Alu 1 308 -4 449 77 0 86 chr11 28227514 28227631 -122555922 + (GGGGA)n Simple_repeat Simple_repeat 4 110 0 397 226 157 88 chr11 28227876 28228035 -122555518 + MER5A DNA MER1_type 14 183 -6 2427 157 33 19 chr11 28228088 28228508 -122555045 + MSTB LTR MaLR 1 426 0 1966 145 0 3 chr11 28229659 28229941 -122553612 - AluSx SINE Alu -31 281 1 341 321 64 14 chr11 28230648 28230828 -122552725 - MIR3 SINE MIR -61 147 3 3112 129 0 5 chr11 28230859 28231286 -122552267 - MSTC LTR MaLR -1 427 3 28 29 0 0 chr11 28231958 28231993 -122551560 + AT_rich Low_complexity Low_complexity 1 35 0 1080 33 0 0 chr11 28231993 28232113 -122551440 - L1PA5 LINE L1 -8 6146 6027 381 300 75 0 chr11 28232177 28232297 -122551256 + L2 LINE L2 3181 3309 -4 406 234 47 0 chr11 28233236 28233343 -122550210 + MER113 DNA MER1_type? 6 117 -404 2475 35 41 0 chr11 28233451 28233741 -122549812 + AluY SINE Alu 1 302 -9 473 300 119 55 chr11 28234095 28234625 -122548928 - L1M2 LINE L1 -5840 1009 446 386 139 12 0 chr11 28234643 28234729 -122548824 + (GGGTG)n Simple_repeat Simple_repeat 3 89 0 443 232 53 33 chr11 28234884 28235035 -122548518 + L1ME4a LINE L1 5956 6109 -12 614 205 83 26 chr11 28235711 28235867 -122547686 + L1MC4 LINE L1 7878 8042 0 219 191 0 48 chr11 28236328 28236370 -122547183 - L2 LINE L2 -94 3219 3180 290 340 97 34 chr11 28236449 28237060 -122546493 + L2 LINE L2 2203 2851 -463 250 304 29 0 chr11 28237187 28237256 -122546297 + MIR SINE MIR 16 86 -176 1356 85 0 0 chr11 28237259 28237436 -122546117 - AluY SINE Alu -2 309 133 405 284 57 35 chr11 28237456 28237597 -122545956 + MIR SINE MIR 106 249 -13 222 381 68 0 chr11 28237685 28237803 -122545750 + L2 LINE L2 3141 3266 -6 202 271 0 0 chr11 28238835 28238883 -122544670 - L2 LINE L2 -3 3310 3263 361 316 86 7 chr11 28239767 28239906 -122543647 + MIR3 SINE MIR 9 158 -50 329 227 13 113 chr11 28243038 28243188 -122540365 + L1MC5 LINE L1 7732 7866 -95 240 245 49 43 chr11 28243292 28243413 -122540140 + MIR SINE MIR 38 162 -62 23 33 0 0 chr11 28245267 28245297 -122538256 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr11 28247115 28247139 -122536414 + AT_rich Low_complexity Low_complexity 1 24 0 304 310 145 0 chr11 28247333 28247478 -122536075 + MIR SINE MIR 91 256 -6 210 278 104 62 chr11 28247550 28247694 -122535859 - MIR SINE MIR -56 206 57 334 220 318 8 chr11 28249130 28249262 -122534291 - MER5A DNA MER1_type -1 188 16 1793 183 0 16 chr11 28249633 28249945 -122533608 - AluJo SINE Alu -5 307 1 279 107 36 18 chr11 28250295 28250351 -122533202 + MIR SINE MIR 85 141 -67 1930 150 0 7 chr11 28250649 28250942 -122532611 - AluJb SINE Alu -21 291 1 1892 142 0 43 chr11 28252783 28253108 -122530445 + AluJo SINE Alu 2 312 0 235 291 8 102 chr11 28253138 28253265 -122530288 + L2 LINE L2 3155 3269 -3 988 238 9 5 chr11 28253311 28253534 -122530019 - MER58A DNA MER1_type 0 224 1 1540 103 9 5 chr11 28253758 28253971 -122529582 - AluSp SINE Alu -14 299 86 184 244 12 12 chr11 28254159 28254245 -122529308 + GA-rich Low_complexity Low_complexity 2 87 0 214 238 20 20 chr11 28255234 28255335 -122528218 + (TA)n Simple_repeat Simple_repeat 2 102 0 1798 171 45 9 chr11 28255601 28255935 -122527618 + MER7A DNA MER2_type 2 345 -1 23 54 0 0 chr11 28258145 28258182 -122525371 + AT_rich Low_complexity Low_complexity 1 37 0 1837 120 41 57 chr11 28259193 28259510 -122524043 + AluJb SINE Alu 1 312 0 2358 104 0 0 chr11 28260517 28260826 -122522727 + AluSc SINE Alu 1 309 0 23 0 0 0 chr11 28264901 28264924 -122518629 + AT_rich Low_complexity Low_complexity 1 23 0 639 341 36 50 chr11 28264982 28265498 -122518055 - L2 LINE L2 -46 3267 2766 210 270 22 67 chr11 28268235 28268324 -122515229 - MER5A DNA MER1_type -98 91 7 21 36 0 0 chr11 28269015 28269043 -122514510 + AT_rich Low_complexity Low_complexity 1 28 0 299 283 54 0 chr11 28269645 28269737 -122513816 - MIR SINE MIR -83 125 29 45 34 0 0 chr11 28271297 28271356 -122512197 + AT_rich Low_complexity Low_complexity 1 59 0 190 160 60 60 chr11 28271433 28271483 -122512070 - L2 LINE L2 0 3313 3264 2034 99 0 0 chr11 28272164 28272449 -122511104 - AluSx SINE Alu 0 317 33 247 289 7 0 chr11 28273860 28273939 -122509614 - MIR SINE MIR -84 124 41 30 0 0 0 chr11 28274303 28274333 -122509220 + AT_rich Low_complexity Low_complexity 1 30 0 1946 131 3 34 chr11 28276675 28276996 -122506557 - AluSq SINE Alu -2 311 1 2291 85 3 16 chr11 28277292 28277598 -122505955 - AluSx SINE Alu -10 302 1 1369 140 44 18 chr11 28277823 28278052 -122505501 + MER46A DNA MER2_type 1 235 -1 2319 93 20 0 chr11 28278276 28278576 -122504977 - AluSx SINE Alu -6 306 1 204 274 59 0 chr11 28279320 28279371 -122504182 - L2 LINE L2 -6 3307 3254 675 263 103 38 chr11 28279833 28280354 -122503199 + MLT1L LTR MaLR 4 610 -5 824 309 29 63 chr11 28280362 28280854 -122502699 + MLT1J LTR MaLR 29 503 -8 1694 139 105 0 chr11 28280967 28281234 -122502319 + AluJb SINE Alu 1 295 -17 263 250 62 0 chr11 28281429 28281509 -122502044 + L1ME4a LINE L1 5947 6031 -90 498 265 110 85 chr11 28282424 28282824 -122500729 + MLT1K LTR MaLR 179 588 0 316 325 131 57 chr11 28282997 28283631 -122499922 + L2 LINE L2 1963 2643 -671 405 209 137 43 chr11 28284155 28284294 -122499259 + MIR SINE MIR 37 188 -74 368 305 1 11 chr11 28284835 28284945 -122498608 + MIR SINE MIR 49 158 -50 441 264 84 17 chr11 28285120 28285298 -122498255 + MIR SINE MIR 1 190 -72 1171 254 58 30 chr11 28285349 28285778 -122497775 + L1MC4 LINE L1 7588 8028 -14 206 236 139 28 chr11 28287285 28287357 -122496196 + L2 LINE L2 2394 2473 -841 343 354 91 48 chr11 28287408 28287740 -122495813 + L2 LINE L2 2814 3171 -101 1158 142 19 33 chr11 28287740 28287951 -122495602 + MER3 DNA MER1_type 1 208 -1 343 354 91 48 chr11 28287951 28288056 -122495497 + L2 LINE L2 3171 3270 -2 24 32 0 0 chr11 28288391 28288422 -122495131 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr11 28489596 28489620 -122293933 + GC_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 28489642 28489670 -122293883 + GC_rich Low_complexity Low_complexity 1 28 0 384 59 0 0 chr11 28490453 28490504 -122293049 + (TGG)n Simple_repeat Simple_repeat 2 52 0 2557 61 3 3 chr11 28491296 28491607 -122291946 + AluSp SINE Alu 1 311 -2 321 241 219 22 chr11 28491871 28492008 -122291545 - MIR3 SINE MIR -22 186 23 1721 116 45 71 chr11 28492130 28492441 -122291112 - AluSx SINE Alu -9 303 1 301 274 53 21 chr11 28492471 28492566 -122290987 - MER5A DNA MER1_type -86 103 6 718 128 8 45 chr11 28492841 28492974 -122290579 - L1MB3 LINE L1 -298 5885 5758 369 251 30 96 chr11 28493936 28494103 -122289450 - L3 LINE CR1 -89 1488 1333 1744 134 0 33 chr11 28494137 28494412 -122289141 - AluJo SINE Alu -7 305 40 482 219 61 79 chr11 28494707 28494935 -122288618 + MIR SINE MIR 4 227 -35 2144 200 41 52 chr11 28496053 28496288 -122287265 + L1ME1 LINE L1 5581 5817 -349 1802 178 3 10 chr11 28496288 28496592 -122286961 + AluJo SINE Alu 1 302 -10 2144 200 41 52 chr11 28496592 28496917 -122286636 + L1ME1 LINE L1 5817 6135 -31 2309 102 0 31 chr11 28496958 28497281 -122286272 - AluSq SINE Alu 0 313 1 1920 108 0 0 chr11 28497920 28498171 -122285382 - AluSg SINE Alu -13 297 47 2186 116 3 7 chr11 28498543 28498845 -122284708 - AluSx SINE Alu -11 301 1 2223 98 0 7 chr11 28499045 28499342 -122284211 + AluSg1 SINE Alu 1 295 -14 356 216 62 52 chr11 28499411 28499508 -122284045 - MIR SINE MIR -68 140 43 410 246 6 123 chr11 28500366 28500545 -122283008 - MIR3 SINE MIR -5 203 46 200 262 238 0 chr11 28501203 28501287 -122282266 - L2 LINE L2 0 3272 3169 709 245 37 6 chr11 28503407 28503570 -122279983 - MER5B DNA MER1_type -2 176 9 209 288 106 0 chr11 28503558 28503624 -122279929 - MIR3 SINE MIR -20 188 116 * 1035 218 63 0 chr11 28504038 28504244 -122279309 + MER58A DNA MER1_type 1 219 -5 422 271 34 77 chr11 28504274 28504481 -122279072 - HAL1b LINE L1 -872 476 279 974 266 78 82 chr11 28505002 28505426 -122278127 + MLT1J LTR MaLR 1 424 -87 846 83 25 8 chr11 28505426 28505547 -122278006 - L1MB8 LINE L1 -6 6172 6050 974 266 78 82 chr11 28505547 28505633 -122277920 + MLT1J LTR MaLR 424 509 -2 886 140 28 14 chr11 28506328 28506471 -122277082 + AluSg/x SINE Alu 143 287 -23 204 125 0 0 chr11 28506614 28506646 -122276907 + (TA)n Simple_repeat Simple_repeat 1 32 0 1059 162 6 0 chr11 28506653 28506820 -122276733 + AluJb SINE Alu 132 299 -13 421 293 37 37 chr11 28506823 28506987 -122276566 - MIR3 SINE MIR -21 187 24 22 0 0 0 chr11 28506989 28507011 -122276542 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr11 28507375 28507417 -122276136 + AT_rich Low_complexity Low_complexity 1 42 0 240 86 0 0 chr11 28507615 28507650 -122275903 + (TG)n Simple_repeat Simple_repeat 1 35 0 414 273 55 0 chr11 28508124 28508234 -122275319 + L2 LINE L2 3185 3300 -13 21 0 0 0 chr11 28508240 28508261 -122275292 + AT_rich Low_complexity Low_complexity 1 21 0 284 232 112 48 chr11 28508339 28508464 -122275089 + L2 LINE L2 2943 3075 -238 332 290 129 31 chr11 28508495 28508832 -122274721 - L2 LINE L2 -12 3301 2743 2087 102 13 58 chr11 28508900 28509213 -122274340 + AluSx SINE Alu 1 299 -13 467 275 123 0 chr11 28509452 28509623 -122273930 + L2 LINE L2 3122 3313 0 787 151 34 0 chr11 28509813 28509932 -122273621 - FLAM_C SINE Alu -19 124 2 21 0 0 0 chr11 28509933 28509954 -122273599 + AT_rich Low_complexity Low_complexity 1 21 0 1928 123 11 104 chr11 28510678 28511044 -122272509 - MER1B DNA MER1_type -3 334 3 274 108 0 0 chr11 28511325 28511362 -122272191 - Alu SINE Alu -11 291 255 267 305 158 0 chr11 28511615 28511697 -122271856 - L2 LINE L2 -39 3274 3180 2107 113 16 13 chr11 28511724 28512033 -122271520 + AluSq SINE Alu 1 310 -3 334 296 114 28 chr11 28512162 28512338 -122271215 - L2 LINE L2 -416 2898 2708 2714 153 42 24 chr11 28512837 28513294 -122270259 - MLT1C LTR MaLR -2 465 1 1547 127 3 124 chr11 28513591 28513795 -122269758 - AluSp SINE Alu -10 303 151 1966 136 0 7 chr11 28513795 28514081 -122269472 - AluSx SINE Alu -28 284 1 1547 127 3 124 chr11 28514081 28514198 -122269355 - AluSp SINE Alu -162 151 21 330 111 0 0 chr11 28514198 28514243 -122269310 - AluSp SINE Alu -257 45 1 23 33 0 0 chr11 28514458 28514488 -122269065 + AT_rich Low_complexity Low_complexity 1 30 0 646 278 148 0 chr11 28515139 28515348 -122268205 - MIR SINE MIR -21 241 2 2181 98 0 19 chr11 28516141 28516458 -122267095 + AluY SINE Alu 1 311 0 183 80 0 0 chr11 28516694 28516719 -122266834 + (A)n Simple_repeat Simple_repeat 1 25 0 827 165 82 38 chr11 28516787 28516945 -122266608 + FRAM SINE Alu 1 165 -1 1264 160 5 0 chr11 28517090 28517284 -122266269 + AluSg/x SINE Alu 97 291 -19 879 128 0 30 chr11 28518408 28518541 -122265012 + FLAM_C SINE Alu 5 133 0 1729 102 18 0 chr11 28518704 28518930 -122264623 - MER30 DNA MER1_type 0 230 1 1990 104 54 17 chr11 28519021 28519319 -122264234 - AluSx SINE Alu -3 309 1 229 259 74 25 chr11 28519925 28520006 -122263547 - MIR3 SINE MIR -36 172 88 1890 138 0 58 chr11 28520137 28520448 -122263105 + AluJb SINE Alu 1 293 -19 2510 78 0 0 chr11 28520689 28520998 -122262555 + AluSq SINE Alu 1 309 -4 184 286 12 36 chr11 28523522 28523606 -122259947 - MIR3 SINE MIR -7 201 120 222 219 0 53 chr11 28523848 28523962 -122259591 + GA-rich Low_complexity Low_complexity 3 110 0 287 357 27 18 chr11 28524172 28524284 -122259269 - MER91A DNA MER1_type -82 114 2 2528 146 93 37 chr11 28524766 28525073 -122258480 - MLT2B1 LTR ERVL -7 513 168 2177 119 0 22 chr11 28525073 28525405 -122258148 - AluSx SINE Alu 0 312 1 2528 146 93 37 chr11 28525405 28525583 -122257970 - MLT2B1 LTR ERVL -352 168 1 585 295 65 54 chr11 28525733 28525771 -122257782 - L1ME LINE L1 -500 5670 5634 1704 151 6 63 chr11 28525771 28526089 -122257464 + AluJo SINE Alu 2 301 -11 585 295 65 54 chr11 28526089 28526436 -122257117 - L1ME LINE L1 -536 5634 5281 1141 211 48 0 chr11 28526438 28526647 -122256906 - MER58A DNA MER1_type -2 222 4 1398 187 30 16 chr11 28526695 28527000 -122256553 - AluJo SINE Alu -3 309 1 2504 59 7 0 chr11 28527098 28527401 -122256152 - AluSp SINE Alu -8 305 1 216 97 0 0 chr11 28527689 28527702 -122255851 + (TG)n Simple_repeat Simple_repeat 1 13 -351 2044 111 7 20 chr11 28527702 28528008 -122255545 + AluSg SINE Alu 1 302 -8 216 97 0 0 chr11 28528008 28528022 -122255531 + (TG)n Simple_repeat Simple_repeat 12 364 0 216 97 0 0 chr11 28528022 28528053 -122255500 + (TG)n Simple_repeat Simple_repeat 2 32 0 309 109 0 0 chr11 28528053 28528099 -122255454 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1900 125 57 0 chr11 28528107 28528388 -122255165 + AluSx SINE Alu 2 298 -14 2166 105 16 0 chr11 28529209 28529513 -122254040 - AluSp SINE Alu -3 310 2 198 0 0 0 chr11 28530185 28530207 -122253346 + (A)n Simple_repeat Simple_repeat 1 22 0 267 79 0 0 chr11 28530554 28530592 -122252961 + (TC)n Simple_repeat Simple_repeat 2 39 0 2397 87 3 13 chr11 28530772 28531082 -122252471 - AluSx SINE Alu -5 307 1 262 273 70 39 chr11 28531175 28531303 -122252250 - MER5A DNA MER1_type -22 167 36 1175 273 120 10 chr11 28531355 28531755 -122251798 - LTR16B LTR ERVL -6 458 15 298 304 170 12 chr11 28531822 28531993 -122251560 - L3 LINE CR1 -3 1574 1377 887 111 17 0 chr11 28532046 28532163 -122251390 + FLAM_C SINE Alu 1 119 -24 231 61 0 0 chr11 28532165 28532198 -122251355 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 306 67 0 0 chr11 28533020 28533065 -122250488 + (TC)n Simple_repeat Simple_repeat 2 46 0 1857 236 36 41 chr11 28533381 28533937 -122249616 - L1MD3 LINE L1 -1 7994 7442 3753 223 49 63 chr11 28533981 28534987 -122248566 - L1MC4a LINE L1 -748 5398 5351 1524 202 10 3 chr11 28534987 28535279 -122248274 - AluJo SINE Alu -18 294 1 3753 223 49 63 chr11 28535279 28535732 -122247821 - L1MC4a LINE L1 -795 5351 4893 * 4262 163 23 13 chr11 28535727 28536096 -122247457 - L1PA16 LINE L1 -209 5957 5593 1980 131 3 20 chr11 28536096 28536393 -122247160 + AluSx SINE Alu 1 292 -20 4262 163 23 13 chr11 28536393 28537506 -122246047 - L1PA16 LINE L1 -573 5593 4469 227 235 59 0 chr11 28537725 28537776 -122245777 - MIR SINE MIR -79 183 130 209 250 0 0 chr11 28537995 28538039 -122245514 + L3 LINE CR1 1068 1111 -466 302 340 38 13 chr11 28538049 28538208 -122245345 + MER117 DNA MER1_type 4 166 -31 234 0 0 0 chr11 28538354 28538380 -122245173 + (TTG)n Simple_repeat Simple_repeat 2 27 0 330 228 89 49 chr11 28538408 28538531 -122245022 + L3 LINE CR1 1291 1418 -159 241 225 0 0 chr11 28538778 28538818 -122244735 + L2 LINE L2 3219 3258 -14 198 0 0 0 chr11 28538819 28538841 -122244712 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 568 259 0 0 chr11 28539205 28539321 -122244232 + L2 LINE L2 3198 3313 0 297 274 88 18 chr11 28540616 28540729 -122242824 + L2 LINE L2 3192 3312 -1 192 125 0 0 chr11 28541008 28541040 -122242513 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1147 273 78 44 chr11 28541475 28541908 -122241645 - LTR16A LTR ERVL 0 450 3 7152 50 6 0 chr11 28542023 28543119 -122240434 - L1PA7 LINE L1 0 6154 5057 396 0 0 0 chr11 28543249 28543293 -122240260 + (TG)n Simple_repeat Simple_repeat 2 45 0 1527 183 51 70 chr11 28543303 28543389 -122240164 + MLT1A1 LTR MaLR 1 87 -278 2288 104 7 0 chr11 28543389 28543688 -122239865 + AluSq SINE Alu 1 301 -12 1527 183 51 70 chr11 28543688 28543973 -122239580 + MLT1A1 LTR MaLR 87 365 0 2175 132 34 14 chr11 28544578 28544935 -122238618 + THE1B LTR MaLR 1 364 0 2176 113 0 10 chr11 28544960 28545269 -122238284 + AluSc SINE Alu 1 306 -3 459 181 30 30 chr11 28545444 28545577 -122237976 - Charlie5 DNA MER1_type -90 2522 2390 747 282 29 96 chr11 28545767 28546214 -122237339 - MLT1J LTR MaLR -94 417 1 1218 61 0 22 chr11 28546702 28546882 -122236671 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 522 132 9 19 chr11 28546884 28546990 -122236563 + CT-rich Low_complexity Low_complexity 4 108 0 1611 141 48 12 chr11 28546991 28547239 -122236314 - AluSq SINE Alu -52 261 5 194 311 151 19 chr11 28547406 28547512 -122236041 - L2 LINE L2 -31 3241 3122 211 224 0 17 chr11 28547545 28547603 -122235950 + (TTG)n Simple_repeat Simple_repeat 3 59 0 1106 178 0 72 chr11 28547695 28547931 -122235622 + MER20 DNA MER1_type 1 219 0 281 326 131 11 chr11 28548679 28548854 -122234699 + L2 LINE L2 2841 3036 -236 250 353 88 22 chr11 28548891 28549027 -122234526 + L2 LINE L2 3123 3267 -5 22 0 0 0 chr11 28549121 28549143 -122234410 + AT_rich Low_complexity Low_complexity 1 22 0 3841 240 82 141 chr11 28549967 28550807 -122232746 + L2 LINE L2 37 925 -2389 601 135 0 0 chr11 28550807 28550896 -122232657 - 5S rRNA rRNA -31 90 2 3841 240 82 141 chr11 28550896 28551684 -122231869 + L2 LINE L2 925 1583 -1731 2180 134 0 6 chr11 28551684 28551998 -122231555 - AluSx SINE Alu 0 312 1 3841 240 82 141 chr11 28551998 28552600 -122230953 + L2 LINE L2 1583 2219 -1095 1348 162 30 60 chr11 28552615 28552949 -122230604 - MER33 DNA MER1_type 0 324 1 209 68 136 23 chr11 28552960 28553004 -122230549 - L2 LINE L2 -530 2784 2736 21 0 0 0 chr11 28553016 28553037 -122230516 + AT_rich Low_complexity Low_complexity 1 21 0 775 151 0 8 chr11 28553037 28553156 -122230397 - FLAM_C SINE Alu -15 118 1 965 219 136 79 chr11 28553160 28553196 -122230357 - L2 LINE L2 -568 2746 2713 2168 103 6 32 chr11 28553196 28553508 -122230045 - AluSq SINE Alu -9 304 1 965 219 136 79 chr11 28553508 28553877 -122229676 - L2 LINE L2 -601 2713 2318 685 277 117 73 chr11 28553877 28554453 -122229100 - L2 LINE L2 -125 3188 2592 229 278 56 37 chr11 28554509 28554617 -122228936 + L2 LINE L2 3159 3268 -4 202 365 0 0 chr11 28554670 28554733 -122228820 + L2 LINE L2 3201 3263 -9 21 0 0 0 chr11 28555953 28555974 -122227579 + AT_rich Low_complexity Low_complexity 1 21 0 2148 114 0 13 chr11 28556212 28556519 -122227034 - AluSx SINE Alu -9 303 1 335 171 34 111 chr11 28556668 28556785 -122226768 + MIR SINE MIR 105 212 -50 311 341 38 30 chr11 28557633 28557765 -122225788 - MIR SINE MIR -6 256 124 377 297 109 17 chr11 28558239 28558414 -122225139 + MIR SINE MIR 71 261 -1 238 206 29 69 chr11 28558725 28558827 -122224726 - MER103 DNA DNA -3 163 66 24 85 0 0 chr11 28559213 28559272 -122224281 + AT_rich Low_complexity Low_complexity 1 59 0 435 263 45 23 chr11 28560002 28560135 -122223418 + MER5B DNA MER1_type 8 143 -35 227 340 47 0 chr11 28560837 28560943 -122222610 - MIR SINE MIR -55 153 43 376 309 22 36 chr11 28560992 28561131 -122222422 - MER5A DNA MER1_type -1 188 52 281 175 0 95 chr11 28561136 28561199 -122222354 + MER5B DNA MER1_type 2 58 -120 710 182 0 0 chr11 28561202 28561323 -122222230 + AluJb SINE Alu 190 310 -2 601 222 0 8 chr11 28561328 28561445 -122222108 + MER5B DNA MER1_type 63 178 0 510 276 109 6 chr11 28561528 28561684 -122221869 + MIR SINE MIR 32 203 -59 217 89 44 0 chr11 28561738 28561783 -122221770 + (TG)n Simple_repeat Simple_repeat 2 48 0 210 224 47 47 chr11 28562620 28562705 -122220848 - MIR3 SINE MIR -1 207 123 202 330 212 0 chr11 28562863 28562981 -122220572 + L2 LINE L2 3123 3265 -7 204 200 0 0 chr11 28563138 28563183 -122220370 + G-rich Low_complexity Low_complexity 1 45 0 1108 286 62 47 chr11 28563210 28563296 -122220257 - L2 LINE L2 -33 3280 3197 228 67 0 0 chr11 28563296 28563326 -122220227 + (TG)n Simple_repeat Simple_repeat 1 30 0 1108 286 62 47 chr11 28563326 28564142 -122219411 - L2 LINE L2 -116 3197 2364 385 177 18 18 chr11 28564143 28564256 -122219297 + (TCTA)n Simple_repeat Simple_repeat 1 113 0 214 326 37 59 chr11 28564264 28564399 -122219154 - MIR SINE MIR -67 141 10 392 292 157 11 chr11 28564404 28564560 -122218993 - MIR SINE MIR -56 206 20 9672 169 15 11 chr11 28564560 28566544 -122217009 - L1PA15 LINE L1 0 6165 4159 2115 142 6 3 chr11 28566544 28566855 -122216698 - AluSq SINE Alu -1 312 1 9672 169 15 11 chr11 28566855 28567519 -122216034 - L1PA15 LINE L1 -2006 4159 3499 392 292 157 11 chr11 28567519 28567540 -122216013 - MIR SINE MIR -242 20 3 879 245 89 3 chr11 28568316 28568688 -122214865 + L1ME4a LINE L1 3001 3404 -2742 1819 235 61 16 chr11 28568719 28569289 -122214264 + L1ME4a LINE L1 3497 4092 -2054 2540 107 0 3 chr11 28569304 28569667 -122213886 + THE1C LTR MaLR 14 375 0 3485 238 62 15 chr11 28569667 28570101 -122213452 + L1ME4a LINE L1 4088 4500 -1646 2349 92 13 0 chr11 28570101 28570407 -122213146 + AluSp SINE Alu 1 310 -3 3485 238 62 15 chr11 28570407 28571152 -122212401 + L1ME4a LINE L1 4500 5322 -824 538 229 14 0 chr11 28571154 28571298 -122212255 + L1ME1 LINE L1 4514 4659 -1487 1072 189 4 16 chr11 28571302 28571546 -122212007 + L1MA9 LINE L1 6071 6311 -1 2662 234 42 19 chr11 28571569 28572377 -122211176 + L1ME1 LINE L1 5311 6142 -24 189 147 0 0 chr11 28572505 28572539 -122211014 + (GA)n Simple_repeat Simple_repeat 2 35 0 2000 126 28 20 chr11 28572884 28573242 -122210311 - THE1C LTR MaLR 0 375 15 191 346 13 58 chr11 28573632 28573683 -122209870 - L2 LINE L2 -1357 1957 1905 2089 155 3 15 chr11 28573683 28574024 -122209529 - MER1B DNA MER1_type 0 337 1 191 346 13 58 chr11 28574024 28574128 -122209425 - L2 LINE L2 -1409 1905 1809 358 268 24 12 chr11 28574417 28574499 -122209054 - MIR3 SINE MIR -42 166 84 2316 110 0 0 chr11 28574663 28574962 -122208591 - AluSx SINE Alu -13 299 1 371 269 86 0 chr11 28575421 28575514 -122208039 + MIR SINE MIR 44 144 -118 189 290 16 16 chr11 28575692 28575754 -122207799 + L3 LINE CR1 1288 1349 -228 251 0 0 56 chr11 28576541 28576577 -122206976 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2257 121 0 0 chr11 28576682 28576987 -122206566 + AluSx SINE Alu 1 305 -7 293 314 36 9 chr11 28577081 28577304 -122206249 + L1ME4a LINE L1 5616 5844 -277 406 265 49 43 chr11 28577386 28577548 -122206005 + L1ME4a LINE L1 5956 6118 -3 2017 171 17 62 chr11 28578622 28579102 -122204451 - MLT2B2 LTR ERVL 0 464 1 30402 153 43 26 chr11 28579111 28584764 -122198789 - ERVL-B2 LTR ERVL -12 5752 2 324 94 0 19 chr11 28584764 28584803 -122198750 - Ricksha DNA DNA -1143 903 866 339 25 0 0 chr11 28584820 28584860 -122198693 + (TG)n Simple_repeat Simple_repeat 2 41 0 1631 153 121 7 chr11 28584860 28585167 -122198386 + MER2 DNA MER2_type 2 343 -1 776 245 51 65 chr11 28585168 28585519 -122198034 - MLT2B3 LTR ERVL -123 431 86 465 137 0 0 chr11 28585650 28585723 -122197830 - MLT2B1 LTR ERVL -439 81 9 1717 148 48 15 chr11 28586385 28586656 -122196897 + AluJb SINE Alu 9 288 -24 244 284 170 35 chr11 28587237 28587466 -122196087 + L3b LINE CR1 1191 1450 -133 189 0 0 0 chr11 28587850 28587871 -122195682 + (CA)n Simple_repeat Simple_repeat 2 22 0 1463 78 15 86 chr11 28587874 28588142 -122195411 + L1MA2 LINE L1 6056 6304 0 566 247 89 11 chr11 28588341 28588531 -122195022 - MLT1L LTR MaLR 0 615 411 745 226 52 44 chr11 28588533 28588785 -122194768 - HAL1 LINE L1 -2232 275 22 482 243 44 77 chr11 28588857 28589038 -122194515 - MLT1L LTR MaLR -354 261 87 396 0 0 0 chr11 28589638 28589682 -122193871 + (TG)n Simple_repeat Simple_repeat 2 45 0 279 330 63 36 chr11 28590325 28590536 -122193017 - MIR SINE MIR -33 229 16 428 335 16 11 chr11 28590625 28590810 -122192743 - L2 LINE L2 -338 2976 2791 901 216 60 5 chr11 28591843 28592042 -122191511 + MER58A DNA MER1_type 1 210 -14 626 306 15 48 chr11 28592068 28592339 -122191214 - L2 LINE L2 -561 2753 2492 400 323 137 47 chr11 28592958 28593404 -122190149 + L2 LINE L2 2217 2702 -612 2288 93 0 7 chr11 28594032 28594334 -122189219 - AluSc SINE Alu -9 300 1 377 307 79 82 chr11 28595311 28595715 -122187838 + HAL1 LINE L1 1035 1437 -1070 900 103 16 4 chr11 28595717 28595888 -122187665 + L1MB1 LINE L1 6025 6167 -1 2374 81 0 37 chr11 28595916 28596238 -122187315 + AluSp SINE Alu 1 310 -3 261 291 35 0 chr11 28596281 28596367 -122187186 + HAL1 LINE L1 1535 1623 -884 1901 130 51 10 chr11 28596476 28596769 -122186784 + AluSq SINE Alu 1 305 -8 309 329 51 7 chr11 28597173 28597310 -122186243 + HAL1 LINE L1 1623 1765 -742 964 113 6 6 chr11 28597345 28597505 -122186048 + L1PB1 LINE L1 5634 5793 -358 354 165 0 33 chr11 28597537 28597719 -122185834 + (TA)n Simple_repeat Simple_repeat 2 177 0 450 192 0 36 chr11 28597817 28598325 -122185228 + (TA)n Simple_repeat Simple_repeat 1 489 0 247 186 0 30 chr11 28598337 28598504 -122185049 + (TA)n Simple_repeat Simple_repeat 2 163 0 2316 108 25 3 chr11 28598529 28598891 -122184662 + L1PB1 LINE L1 5782 6151 0 382 82 66 0 chr11 28599407 28599468 -122184085 - MLT1A2 LTR MaLR -308 66 2 2656 216 65 39 chr11 28599559 28600726 -122182827 + L1MD2 LINE L1 5123 6359 0 466 322 34 34 chr11 28602898 28603075 -122180478 - L2 LINE L2 0 3272 3096 366 271 108 22 chr11 28603110 28603298 -122180255 - MIR SINE MIR -61 201 8 207 281 18 0 chr11 28603376 28603433 -122180120 - L2 LINE L2 -252 3061 3004 477 257 87 58 chr11 28603473 28603679 -122179874 + MIR SINE MIR 45 256 -6 272 357 81 46 chr11 28604267 28604417 -122179136 + L2 LINE L2 2357 2500 -814 2621 185 35 80 chr11 28604417 28605102 -122178451 + MLT1E1 LTR MaLR 1 654 0 272 357 81 46 chr11 28605102 28605346 -122178207 + L2 LINE L2 2500 2765 -549 661 282 87 8 chr11 28605358 28605599 -122177954 + MIR SINE MIR 3 262 0 188 178 67 44 chr11 28606167 28606212 -122177341 + L2 LINE L2 3262 3307 -6 180 179 0 0 chr11 28606831 28606870 -122176683 + CT-rich Low_complexity Low_complexity 2 40 0 1714 166 32 3 chr11 28606882 28607165 -122176388 - AluJb SINE Alu -21 291 1 369 0 0 0 chr11 28607410 28607451 -122176102 + (TG)n Simple_repeat Simple_repeat 2 42 0 326 345 40 14 chr11 28607458 28607606 -122175947 - MIR SINE MIR -21 241 90 509 299 0 15 chr11 28607619 28607756 -122175797 - MIR SINE MIR -123 139 5 1551 184 35 4 chr11 28608437 28608698 -122174855 + AluJb SINE Alu 5 273 -39 1339 164 5 0 chr11 28608833 28609040 -122174513 - AluJo SINE Alu -20 292 85 544 314 21 53 chr11 28609045 28609320 -122174233 - Tigger8 DNA MER2_type -285 381 117 812 107 0 16 chr11 28609320 28609441 -122174112 + L1PA10 LINE L1 6047 6165 -3 544 314 21 53 chr11 28609441 28609502 -122174051 - Tigger8 DNA MER2_type -549 117 56 284 274 0 0 chr11 28609830 28609903 -122173650 + MER94 DNA DNA 1 73 -61 223 286 0 0 chr11 28610313 28610369 -122173184 + L2 LINE L2 3217 3272 0 236 30 30 0 chr11 28611194 28611227 -122172326 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2112 109 3 0 chr11 28611240 28611523 -122172030 - AluSx SINE Alu -28 284 1 561 263 8 0 chr11 28611616 28611749 -122171804 + MER94 DNA DNA 1 134 0 371 288 0 34 chr11 28612773 28612919 -122170634 + G-rich Low_complexity Low_complexity 2 142 0 1204 223 39 18 chr11 28613108 28613445 -122170108 + MER2 DNA MER2_type 1 344 0 1662 268 12 33 chr11 28613504 28614016 -122169537 - MER74B LTR ERVL -67 555 55 485 222 208 0 chr11 28614016 28614160 -122169393 + L2 LINE L2 3138 3311 -2 203 272 88 61 chr11 28614184 28614298 -122169255 + L2 LINE L2 3152 3268 -4 713 218 0 0 chr11 28614571 28614704 -122168849 + FLAM_A SINE Alu 1 133 0 232 197 0 14 chr11 28614770 28614841 -122168712 + L1ME4a LINE L1 6052 6121 0 809 297 26 4 chr11 28615699 28615972 -122167581 - LTR16A LTR ERVL -6 444 166 1683 203 37 8 chr11 28616020 28616375 -122167178 + MLT1A1 LTR MaLR 1 365 0 412 258 42 90 chr11 28617181 28617348 -122166205 + MIR SINE MIR 6 164 -98 610 234 8 0 chr11 28618371 28618495 -122165058 + L2 LINE L2 3189 3313 0 192 262 0 0 chr11 28618543 28618585 -122164968 + MIR SINE MIR 211 252 -10 198 0 0 0 chr11 28618596 28618618 -122164935 + (TGAA)n Simple_repeat Simple_repeat 4 25 0 185 446 0 9 chr11 28618759 28618871 -122164682 + L3 LINE CR1 521 631 -946 323 378 33 22 chr11 28618886 28619161 -122164392 - L1 LINE L1 -935 5211 4934 24 0 0 0 chr11 28619167 28619191 -122164362 + AT_rich Low_complexity Low_complexity 1 24 0 310 284 61 68 chr11 28619618 28619766 -122163787 - L1MEd LINE L1 -5970 149 3 209 207 35 35 chr11 28621184 28621242 -122162311 - MIR SINE MIR -32 230 173 183 303 30 15 chr11 28621273 28621339 -122162214 - MIR SINE MIR -187 75 9 325 310 110 0 chr11 28621399 28621554 -122161999 + L1ME4a LINE L1 5837 6008 -113 195 378 11 11 chr11 28622809 28622899 -122160654 + L2 LINE L2 2887 2976 -296 183 409 21 0 chr11 28623044 28623137 -122160416 + L2 LINE L2 2790 2884 -430 280 346 30 0 chr11 28623185 28623286 -122160267 + L2 LINE L2 2952 3055 -258 797 187 47 0 chr11 28624224 28624395 -122159158 + MER3 DNA MER1_type 31 209 0 837 176 0 0 chr11 28624468 28624599 -122158954 + FLAM_C SINE Alu 2 132 -1 198 0 0 0 chr11 28625621 28625643 -122157910 + (A)n Simple_repeat Simple_repeat 1 22 0 492 283 59 33 chr11 28625884 28626273 -122157280 - L1MC5 LINE L1 -23 7938 7540 43 35 0 0 chr11 28626328 28626385 -122157168 + AT_rich Low_complexity Low_complexity 1 57 0 2112 149 3 0 chr11 28626526 28626834 -122156719 - AluSx SINE Alu -1 311 3 286 221 0 65 chr11 28626878 28626955 -122156598 - L1MC4a LINE L1 -415 7393 7322 436 315 7 7 chr11 28627006 28627149 -122156404 + MIR SINE MIR 88 230 -32 2353 91 10 0 chr11 28627627 28627935 -122155618 + AluSq SINE Alu 1 311 -2 2583 153 24 2 chr11 28628197 28628614 -122154939 - MSTB LTR MaLR 0 426 1 340 383 40 7 chr11 28628825 28628974 -122154579 + L2 LINE L2 3101 3254 -18 409 222 78 11 chr11 28629617 28629707 -122153846 - MER5B DNA MER1_type -81 97 2 2287 59 0 18 chr11 28633084 28633370 -122150183 - AluY SINE Alu -30 281 1 214 264 11 81 chr11 28633678 28633765 -122149788 - MER91A DNA MER1_type -114 82 2 218 271 43 14 chr11 28634157 28634227 -122149326 - MIR SINE MIR -117 145 74 267 268 171 0 chr11 28634507 28634589 -122148964 + MIR SINE MIR 58 153 -109 499 216 50 16 chr11 28636071 28636199 -122147354 + MIR SINE MIR 55 194 -65 2263 107 0 13 chr11 28636291 28636608 -122146945 + AluSq SINE Alu 1 313 0 2133 129 0 0 chr11 28636978 28637272 -122146281 - AluSg SINE Alu -15 295 2 2245 108 0 0 chr11 28637282 28637579 -122145974 - AluSx SINE Alu -15 297 1 1564 160 92 34 chr11 28638046 28638371 -122145182 + MER2 DNA MER2_type 1 344 0 2098 108 7 0 chr11 28638512 28638818 -122144735 + AluSx SINE Alu 1 308 -4 524 232 93 0 chr11 28640525 28640676 -122142877 + MIR3 SINE MIR 36 200 -8 1565 161 92 4 chr11 28641384 28641657 -122141896 - AluJo SINE Alu -15 297 1 1310 222 60 66 chr11 28641984 28642701 -122140852 - L1MEc LINE L1 -5092 1304 528 1851 163 7 3 chr11 28642784 28643090 -122140463 - AluSx SINE Alu -3 309 3 825 215 46 5 chr11 28643110 28643305 -122140248 + HAL1 LINE L1 1397 1599 -908 1556 237 94 18 chr11 28643305 28643739 -122139814 - MLT1C LTR MaLR 0 467 1 652 211 26 75 chr11 28643739 28643880 -122139673 + HAL1 LINE L1 1595 1741 -766 1080 185 0 0 chr11 28643880 28644037 -122139516 + FRAM SINE Alu 1 157 -9 1896 117 71 0 chr11 28644044 28644325 -122139228 + AluSx SINE Alu 1 301 -11 652 211 26 75 chr11 28644325 28644402 -122139151 + HAL1 LINE L1 1747 1810 -697 2967 168 28 16 chr11 28644409 28644915 -122138638 - MLT2B1 LTR ERVL -8 512 1 899 253 36 30 chr11 28644915 28645220 -122138333 + HAL1 LINE L1 1809 2115 -392 22 35 0 0 chr11 28645292 28645321 -122138232 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr11 28645339 28645377 -122138176 + AT_rich Low_complexity Low_complexity 1 38 0 338 299 27 17 chr11 28645788 28645919 -122137634 + MIR SINE MIR 2 136 -72 718 201 82 25 chr11 28645947 28646106 -122137447 + FAM SINE Alu 1 168 -7 325 306 56 19 chr11 28646156 28646264 -122137289 + MER5A DNA MER1_type 60 171 -18 221 320 49 66 chr11 28646159 28646281 -122137272 - MER5A DNA MER1_type -51 138 19 * 30 0 0 0 chr11 28646427 28646457 -122137096 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr11 28647373 28647404 -122136149 + AT_rich Low_complexity Low_complexity 1 31 0 1171 199 64 66 chr11 28648773 28649166 -122134387 + L1M4 LINE L1 2974 3365 -2781 1468 180 34 82 chr11 28649483 28649520 -122134033 + AluJo SINE Alu 1 38 -274 1802 111 0 4 chr11 28649520 28649764 -122133789 - AluSq SINE Alu -70 243 1 1468 180 34 82 chr11 28649764 28650054 -122133499 + AluJo SINE Alu 38 312 0 23 92 0 0 chr11 28701137 28701202 -122082351 + AT_rich Low_complexity Low_complexity 1 65 0 722 37 0 0 chr11 28701380 28701461 -122082092 - AluY SINE Alu -20 291 211 820 233 21 10 chr11 28701461 28701748 -122081805 - L1MC4a LINE L1 -1867 5941 5486 458 230 48 16 chr11 28703849 28703975 -122079578 + MIR SINE MIR 37 166 -96 200 275 50 38 chr11 28707133 28707213 -122076340 - MER5A DNA MER1_type -102 87 7 2488 52 0 0 chr11 28707613 28707902 -122075651 - L1PA5 LINE L1 -1 6804 6516 30010 55 6 1 chr11 28707909 28712048 -122071505 - L1PA5 LINE L1 -396 6409 2241 372 304 10 10 chr11 28712156 28712258 -122071295 - MIR SINE MIR -72 136 35 986 278 83 62 chr11 28712924 28713504 -122070049 - MLT1L LTR MaLR -17 598 7 268 320 97 0 chr11 28713507 28713610 -122069943 + MIR SINE MIR 149 261 -1 212 267 60 93 chr11 28713834 28713984 -122069569 + L2 LINE L2 3169 3313 0 3675 175 18 2 chr11 28714041 28714670 -122068883 - L1MB3 LINE L1 0 6183 5545 2070 65 8 15 chr11 28714722 28714985 -122068568 - L1PA8 LINE L1 0 6172 5912 748 261 66 17 chr11 28715104 28715345 -122068208 + MIR SINE MIR 8 260 -2 239 336 90 8 chr11 28715390 28715512 -122068041 + MARNA DNA Mariner 396 527 -59 287 250 14 0 chr11 28715524 28715596 -122067957 - MLT1K LTR MaLR -4 584 512 442 261 93 68 chr11 28716731 28717084 -122066469 - L1ME4a LINE L1 -1 6120 5759 23 0 0 0 chr11 28717108 28717131 -122066422 + AT_rich Low_complexity Low_complexity 1 23 0 1335 68 0 28 chr11 28717175 28717352 -122066201 - AluY SINE Alu -13 298 127 680 324 21 8 chr11 28718700 28718938 -122064615 + MIR SINE MIR 10 250 -12 424 313 97 15 chr11 28720115 28720310 -122063243 - MIR SINE MIR -35 227 17 232 357 18 36 chr11 28720376 28720544 -122063009 - MER5B DNA MER1_type -7 171 7 333 328 0 8 chr11 28721286 28721408 -122062145 + LTR67 LTR ERVL 430 550 -7 352 329 47 13 chr11 28721618 28721767 -122061786 + MIR SINE MIR 37 190 -72 230 344 95 36 chr11 28722709 28723265 -122060288 + L2 LINE L2 1528 2116 -1198 255 270 24 63 chr11 28723298 28723424 -122060129 + MLT1L LTR MaLR 68 188 -427 894 304 26 26 chr11 28723457 28723770 -122059783 + MLT1L LTR MaLR 296 608 -7 237 226 0 0 chr11 28723775 28723828 -122059725 + L2 LINE L2 2201 2253 -1061 872 276 49 0 chr11 28723848 28724073 -122059480 - MIR SINE MIR -16 246 11 799 259 87 51 chr11 28724101 28724456 -122059097 - L3 LINE CR1 -189 1388 1021 213 262 193 35 chr11 28724868 28725013 -122058540 - MIR SINE MIR -60 202 35 293 271 82 16 chr11 28725236 28725358 -122058195 - L3 LINE CR1 -709 868 739 3514 45 24 56 chr11 28725982 28726261 -122057292 - MLT2A2 LTR ERVL 0 453 193 2327 37 4 0 chr11 28726261 28726531 -122057022 - AluY SINE Alu -9 302 32 3514 45 24 56 chr11 28726531 28726715 -122056838 - MLT2A2 LTR ERVL -260 193 5 5805 73 3 1 chr11 28726719 28727449 -122056104 - HERVL-A2 LTR ERVL 0 5654 4924 457 85 0 0 chr11 28727457 28727516 -122056037 - HERVL-A2 LTR ERVL -1048 4606 4548 570 304 93 5 chr11 28728216 28728420 -122055133 + MIR SINE MIR 38 259 -3 258 281 150 15 chr11 28728527 28728657 -122054896 + MIR3 SINE MIR 48 196 -12 623 329 32 5 chr11 28729419 28729638 -122053915 - MIR SINE MIR -8 254 30 325 317 83 0 chr11 28730007 28730152 -122053401 - MER117 DNA MER1_type 0 197 41 300 158 0 0 chr11 28730678 28730735 -122052818 + GA-rich Low_complexity Low_complexity 1 57 0 820 293 125 36 chr11 28730736 28731183 -122052370 - L2 LINE L2 -14 3299 2813 550 339 14 9 chr11 28731256 28731474 -122052079 - L2 LINE L2 -675 2639 2421 669 277 62 19 chr11 28731684 28732005 -122051548 + L1ME4a LINE L1 5520 5854 -267 795 279 37 113 chr11 28732559 28733021 -122050532 + MLT1K LTR MaLR 3 429 -159 7740 41 3 6 chr11 28733138 28733916 -122049637 + L1PA6 LINE L1 5254 6031 -123 2602 49 0 0 chr11 28733916 28734223 -122049330 + AluY SINE Alu 1 307 -4 7740 41 3 6 chr11 28734223 28734341 -122049212 + L1PA6 LINE L1 6031 6148 -6 432 314 6 6 chr11 28734605 28734777 -122048776 - L1ME3A LINE L1 -264 5906 5735 356 165 132 11 chr11 28734780 28734871 -122048682 + MLT1K LTR MaLR 487 588 0 284 188 254 65 chr11 28734941 28735079 -122048474 + L1ME4a LINE L1 5955 6118 -3 511 307 14 14 chr11 28735668 28735808 -122047745 - MIR3 SINE MIR -32 176 37 961 126 0 0 chr11 28737043 28737170 -122046383 - FLAM_C SINE Alu -5 128 2 197 256 0 0 chr11 28737281 28737324 -122046229 - L2 LINE L2 -4 3268 3226 895 326 128 23 chr11 28737717 28738516 -122045037 - L2 LINE L2 -58 3255 2375 189 336 119 15 chr11 28739145 28739279 -122044274 + MIR3 SINE MIR 55 202 -6 720 141 0 0 chr11 28739596 28739717 -122043836 + (TCCC)n Simple_repeat Simple_repeat 4 124 0 192 121 30 0 chr11 28739900 28739933 -122043620 - L2 LINE L2 -16 3297 3264 298 268 0 0 chr11 28740096 28740152 -122043401 + MIR SINE MIR 20 75 -133 564 291 125 35 chr11 28740429 28740742 -122042811 + MER102b DNA MER1_type 1 341 0 194 235 78 0 chr11 28740919 28740970 -122042583 + L2 LINE L2 3258 3312 -1 257 321 144 5 chr11 28741203 28741418 -122042135 - L2 LINE L2 0 3313 3069 354 281 84 60 chr11 28741630 28741978 -122041575 - MLT1L LTR MaLR -3 612 238 240 293 0 94 chr11 28742138 28742244 -122041309 - L2 LINE L2 -198 3074 2979 410 94 16 0 chr11 28742634 28742698 -122040855 + (ATG)n Simple_repeat Simple_repeat 1 65 0 749 250 36 16 chr11 28742699 28742891 -122040662 - MIR SINE MIR -8 254 59 211 373 0 15 chr11 28743526 28743593 -122039960 + MIR SINE MIR 17 82 -126 189 306 42 0 chr11 28743846 28743918 -122039635 + MIR SINE MIR 32 106 -156 1493 287 30 13 chr11 28743919 28744386 -122039167 - MLT1J LTR MaLR -36 475 1 311 264 144 8 chr11 28744394 28744519 -122039034 + MIR SINE MIR 109 250 -12 193 216 59 39 chr11 28745381 28745432 -122038121 - L2 LINE L2 0 3313 3262 307 271 78 8 chr11 28745616 28745745 -122037808 - L1ME4a LINE L1 0 6121 5984 619 224 29 63 chr11 28745985 28746159 -122037394 - L2 LINE L2 -518 2796 2629 1388 244 68 43 chr11 28746179 28746667 -122036886 + MLT1D LTR MaLR 6 505 0 2862 218 93 29 chr11 28746667 28747498 -122036055 + MLT1D-int LTR MaLR 1 884 -487 1598 184 32 26 chr11 28747711 28748053 -122035500 + MER2 DNA MER2_type 1 344 0 535 244 6 62 chr11 28748440 28748616 -122034937 - LTR16A1 LTR ERVL -26 431 266 900 183 186 8 chr11 28748790 28749042 -122034511 + MER5C DNA MER1_type 11 307 -17 931 290 112 28 chr11 28749109 28749320 -122034233 - L2 LINE L2 -3 3269 3077 1749 271 71 19 chr11 28749320 28749884 -122033669 - MLT1E LTR MaLR 0 593 1 931 290 112 28 chr11 28749884 28750388 -122033165 - L2 LINE L2 -195 3077 2513 1132 150 16 0 chr11 28750388 28750575 -122032978 - MSTB LTR MaLR 0 426 237 519 273 137 0 chr11 28750578 28750761 -122032792 - L2 LINE L2 -1040 2274 2067 370 228 118 6 chr11 28750779 28750934 -122032619 - L1 LINE L1 -1664 4482 4311 1426 237 82 31 chr11 28750940 28751455 -122032098 - L2 LINE L2 -1230 2084 1544 206 374 17 0 chr11 28751410 28751525 -122032028 + MIR SINE MIR 134 250 -12 * 258 367 0 0 chr11 28751766 28751856 -122031697 + MIR SINE MIR 65 154 -108 1893 217 46 65 chr11 28753048 28753129 -122030424 - MLT1F LTR MaLR 0 542 461 2438 55 10 3 chr11 28753129 28753422 -122030131 + AluY SINE Alu 1 295 -16 1893 217 46 65 chr11 28753422 28753883 -122029670 - MLT1F LTR MaLR -81 461 10 289 193 178 13 chr11 28754096 28754202 -122029351 - MIR SINE MIR -64 144 47 863 165 131 55 chr11 28754202 28754375 -122029178 + MSTA LTR MaLR 1 198 -230 2281 100 0 0 chr11 28754375 28754666 -122028887 + AluSc SINE Alu 1 291 -18 863 165 131 55 chr11 28754666 28754729 -122028824 + MSTA LTR MaLR 198 255 -173 3303 138 14 12 chr11 28754733 28755298 -122028255 + MSTA-int LTR MaLR 1004 1569 -11 1964 135 130 18 chr11 28755302 28755686 -122027867 + MSTA LTR MaLR 1 427 -1 181 314 129 0 chr11 28755731 28755801 -122027752 - L2 LINE L2 -51 3221 3143 278 208 117 13 chr11 28755929 28756006 -122027547 - L2 LINE L2 -1351 1963 1879 183 42 0 0 chr11 28756115 28756139 -122027414 + (CA)n Simple_repeat Simple_repeat 2 25 0 3458 105 15 18 chr11 28756385 28757001 -122026552 - MER4B LTR ERV1 0 779 1 406 235 0 5 chr11 28757056 28757142 -122026411 + MIR SINE MIR 3 86 -122 1099 139 49 67 chr11 28757158 28757381 -122026172 - AluJb SINE Alu 0 312 94 577 257 81 9 chr11 28757385 28757579 -122025974 + MIR SINE MIR 65 262 0 273 160 0 0 chr11 28757987 28758037 -122025516 - L1ME3 LINE L1 -8 6154 6105 233 224 106 128 chr11 28758210 28758278 -122025275 - MIR SINE MIR -4 258 190 2058 116 25 0 chr11 28758278 28758555 -122024998 - AluSg SINE Alu -24 286 3 233 224 106 128 chr11 28758555 28758665 -122024888 - MIR SINE MIR -72 190 84 363 78 0 0 chr11 28759661 28759712 -122023841 + (CA)n Simple_repeat Simple_repeat 1 51 0 464 239 142 0 chr11 28760091 28760204 -122023349 - L2 LINE L2 -5 3267 3139 1336 211 55 43 chr11 28760537 28760985 -122022568 + MLT1C LTR MaLR 5 437 -30 234 0 0 0 chr11 28761706 28761732 -122021821 + (CCCCG)n Simple_repeat Simple_repeat 1 26 0 227 188 0 29 chr11 28762406 28762475 -122021078 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 2140 98 11 0 chr11 28763383 28763698 -122019855 - AluSc SINE Alu 0 318 1 3236 144 13 42 chr11 28764496 28764923 -122018630 - MER1A DNA MER1_type -2173 527 118 2056 160 0 3 chr11 28764923 28765236 -122018317 + AluSx SINE Alu 1 312 0 3236 144 13 42 chr11 28765236 28765351 -122018202 - MER1A DNA MER1_type -2582 118 1 243 0 0 0 chr11 28765362 28765389 -122018164 + (TG)n Simple_repeat Simple_repeat 2 28 0 248 315 40 47 chr11 28765940 28766089 -122017464 + MIR SINE MIR 109 256 -6 343 286 94 83 chr11 28766705 28767055 -122016498 - L1ME3 LINE L1 -183 5938 5585 939 283 100 57 chr11 28767084 28767624 -122015929 + MLT1K LTR MaLR 16 578 -10 282 330 28 37 chr11 28768437 28768546 -122015007 - L2 LINE L2 -2 3311 3204 1802 281 50 18 chr11 28769374 28770097 -122013456 - MER20B DNA MER1_type -37 746 1 391 323 74 45 chr11 28771028 28771297 -122012256 - L2 LINE L2 0 3313 3037 261 337 31 10 chr11 28771544 28771642 -122011911 + MIR SINE MIR 30 129 -79 387 263 10 20 chr11 28771655 28771754 -122011799 + L2 LINE L2 3193 3290 -23 720 141 0 0 chr11 28772340 28772461 -122011092 + (TCCC)n Simple_repeat Simple_repeat 4 124 0 195 121 30 0 chr11 28772644 28772677 -122010876 - L2 LINE L2 -16 3297 3264 699 147 47 6 chr11 28773017 28773187 -122010366 + CT-rich Low_complexity Low_complexity 2 178 0 446 306 122 5 chr11 28773398 28773594 -122009959 + L2 LINE L2 2721 2939 -375 770 225 0 0 chr11 28773616 28773758 -122009795 - AluJb SINE Alu -31 281 140 694 261 209 34 chr11 28773761 28774087 -122009466 + L2 LINE L2 2929 3311 -2 386 267 117 8 chr11 28774215 28774335 -122009218 - MIR SINE MIR -13 249 117 229 282 24 35 chr11 28774329 28774414 -122009139 + MIR3 SINE MIR 115 198 -10 * 366 284 28 21 chr11 28774882 28775066 -122008487 - MIR3 SINE MIR -9 199 13 543 257 35 14 chr11 28775474 28775618 -122007935 + MIR SINE MIR 47 193 -69 244 209 12 116 chr11 28775619 28775705 -122007848 - MIR SINE MIR -9 253 177 2364 198 42 12 chr11 28776134 28776709 -122006844 + L1MC4 LINE L1 7309 7900 -142 304 135 0 0 chr11 28776714 28776766 -122006787 + L1MC4 LINE L1 7989 8040 -2 348 289 81 57 chr11 28776789 28777028 -122006525 - L1ME3A LINE L1 -302 5868 5621 2060 211 77 6 chr11 28777028 28777496 -122006057 - MLT1D LTR MaLR -2 503 3 348 289 81 57 chr11 28777496 28777538 -122006015 - L1ME3A LINE L1 -549 5621 5581 438 273 41 72 chr11 28777672 28777719 -122005834 - MIR SINE MIR -71 191 144 342 203 13 0 chr11 28777719 28777798 -122005755 + MER116 DNA Mariner 1 80 0 438 273 41 72 chr11 28777798 28777944 -122005609 - MIR SINE MIR -118 144 4 267 304 16 40 chr11 28778602 28778727 -122004826 + MIR3 SINE MIR 82 203 -5 304 318 48 18 chr11 28778959 28779358 -122004195 + L1MC/D LINE L1 4370 4780 -1366 1888 109 0 32 chr11 28779594 28779879 -122003674 + AluSq SINE Alu 32 307 -6 21 0 0 0 chr11 28779927 28779948 -122003605 + AT_rich Low_complexity Low_complexity 1 21 0 445 249 42 22 chr11 28779967 28780237 -122003316 + L1MC/D LINE L1 5143 5425 -743 243 170 0 0 chr11 28781003 28781050 -122002503 + GA-rich Low_complexity Low_complexity 1 47 0 218 228 18 0 chr11 28781087 28781144 -122002409 + GA-rich Low_complexity Low_complexity 1 58 0 269 227 0 13 chr11 28783171 28783246 -122000307 + L1MC/D LINE L1 5412 5485 -2323 438 289 23 16 chr11 28783321 28783449 -122000104 + MIR SINE MIR 15 143 -119 486 266 131 23 chr11 28783509 28783723 -121999830 - MIR SINE MIR -25 237 1 186 388 31 20 chr11 28784547 28784645 -121998908 - L2 LINE L2 -38 3234 3136 276 315 11 22 chr11 28784778 28784867 -121998686 + MER5B DNA MER1_type 17 104 -74 693 278 77 111 chr11 28785389 28785886 -121997667 - L3 LINE CR1 -15 1562 1083 391 313 26 72 chr11 28785984 28786119 -121997434 - MIR SINE MIR -66 142 66 1922 172 10 40 chr11 28786119 28786521 -121997032 + MLT1B LTR MaLR 1 390 0 391 313 26 72 chr11 28786521 28786566 -121996987 - MIR SINE MIR -142 66 20 2117 108 74 14 chr11 28787281 28787632 -121995921 + THE1C LTR MaLR 4 375 0 391 310 115 30 chr11 28787717 28787917 -121995636 + MIR SINE MIR 17 233 -29 2183 119 0 0 chr11 28787918 28788220 -121995333 - AluSg SINE Alu -8 302 1 712 281 91 13 chr11 28788239 28788470 -121995083 - MIR SINE MIR -10 252 4 367 298 133 6 chr11 28788498 28788656 -121994897 + MIR SINE MIR 74 251 -11 202 322 17 0 chr11 28789315 28789374 -121994179 + MIR SINE MIR 32 91 -117 961 227 23 9 chr11 28789382 28789598 -121993955 - MER58A DNA MER1_type 0 224 6 420 259 229 0 chr11 28789680 28789846 -121993707 + MIR SINE MIR 2 205 -57 1256 186 90 37 chr11 28789863 28790186 -121993367 - MLT1A1 LTR MaLR -2 363 24 736 242 99 19 chr11 28790275 28790486 -121993067 + MIR SINE MIR 9 236 -26 476 252 47 53 chr11 28790638 28790956 -121992597 - L1ME4a LINE L1 -238 5883 5568 414 109 0 0 chr11 28790956 28791020 -121992533 - MSTD LTR MaLR 0 396 333 989 161 54 40 chr11 28791033 28791256 -121992297 - MSTD LTR MaLR -170 226 1 451 297 21 67 chr11 28791873 28792112 -121991441 + MIR SINE MIR 21 248 -14 538 237 25 89 chr11 28792337 28792573 -121990980 - L1ME LINE L1 -375 5746 5526 371 163 0 23 chr11 28792736 28792822 -121990731 + GA-rich Low_complexity Low_complexity 2 85 0 362 294 75 60 chr11 28793718 28793919 -121989634 + MIR SINE MIR 21 224 -38 284 373 45 0 chr11 28794811 28794921 -121988632 + L2 LINE L2 3112 3226 -46 216 67 0 0 chr11 28794925 28794955 -121988598 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 331 331 102 25 chr11 28795080 28795237 -121988316 - L2 LINE L2 0 3272 3104 189 195 0 0 chr11 28796231 28796272 -121987281 + T-rich Low_complexity Low_complexity 1 41 0 489 213 49 8 chr11 28797466 28797588 -121985965 - MIR SINE MIR -46 216 90 272 271 73 21 chr11 28798476 28798572 -121984981 - L2 LINE L2 -4 3309 3209 234 353 69 0 chr11 28799472 28799588 -121983965 + MIR SINE MIR 66 189 -73 924 228 5 31 chr11 28799777 28799970 -121983583 - MER5A DNA MER1_type 0 189 2 1166 289 60 24 chr11 28799997 28800644 -121982909 - L2 LINE L2 -8 3305 2438 295 253 67 0 chr11 28800750 28800825 -121982728 - MER91C DNA MER1_type -6 134 55 773 271 44 4 chr11 28801686 28801911 -121981642 - MIR SINE MIR -1 261 28 2109 112 0 7 chr11 28801936 28802251 -121981302 - AluSg SINE Alu 0 313 1 429 296 114 36 chr11 28802299 28802519 -121981034 - MIR SINE MIR -6 256 20 2031 148 0 0 chr11 28802652 28802957 -121980596 + AluSx SINE Alu 1 305 -7 397 295 120 47 chr11 28803113 28803364 -121980189 + L2 LINE L2 2779 3057 -256 2218 217 16 16 chr11 28804146 28804658 -121978895 - Charlie1b DNA MER1_type 0 523 12 1157 321 50 23 chr11 28804682 28805124 -121978429 - MLT1K LTR MaLR -97 491 38 1344 165 30 76 chr11 28805126 28805429 -121978124 + AluJo SINE Alu 1 289 -23 245 310 100 0 chr11 28805539 28805639 -121977914 - L2 LINE L2 -2 3270 3161 * 533 233 17 0 chr11 28805619 28805735 -121977818 - MIR SINE MIR -4 258 141 221 299 70 90 chr11 28805715 28805916 -121977637 - L2 LINE L2 -44 3228 3032 * 234 0 0 0 chr11 28806006 28806032 -121977521 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1742 176 0 0 chr11 28806032 28806311 -121977242 - AluJb SINE Alu -32 280 2 311 286 181 18 chr11 28807397 28807624 -121975929 - L2 LINE L2 -201 3071 2808 198 0 0 0 chr11 28808066 28808088 -121975465 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr11 28809106 28809128 -121974425 + AT_rich Low_complexity Low_complexity 1 22 0 542 333 23 6 chr11 28809891 28810068 -121973485 + MIR SINE MIR 13 192 -70 222 37 0 0 chr11 28811054 28811081 -121972472 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 2226 123 0 0 chr11 28811306 28811607 -121971946 + AluSx SINE Alu 1 301 -11 2121 130 7 0 chr11 28811644 28811943 -121971610 + AluSx SINE Alu 1 301 -11 247 291 114 0 chr11 28812541 28812620 -121970933 + L2 LINE L2 3192 3279 -34 225 94 0 0 chr11 28812630 28812662 -121970891 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 1064 276 43 88 chr11 28812662 28813424 -121970129 - L2 LINE L2 -3 3310 2597 1826 165 13 0 chr11 28813424 28813727 -121969826 + AluSx SINE Alu 6 312 0 1064 276 43 88 chr11 28813727 28813887 -121969666 - L2 LINE L2 -716 2597 2431 21 0 0 0 chr11 28813887 28813908 -121969645 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr11 28814827 28814847 -121968706 + (TTTCC)n Simple_repeat Simple_repeat 5 24 0 213 304 36 0 chr11 28816260 28816316 -121967237 - MIR3 SINE MIR -40 168 111 194 290 80 30 chr11 28816394 28816494 -121967059 - L2 LINE L2 0 3272 3168 689 128 6 83 chr11 28816817 28816956 -121966597 - MER69 DNA AcHobo -1 2525 2398 1827 148 3 46 chr11 28816956 28817280 -121966273 + AluJb SINE Alu 1 310 -2 689 128 6 83 chr11 28817280 28817296 -121966257 - MER69 DNA AcHobo -128 2398 2382 279 132 264 0 chr11 28817450 28817503 -121966050 - MER69 DNA AcHobo -2459 67 1 206 293 67 13 chr11 28817506 28817581 -121965972 - MIR SINE MIR -153 109 31 370 270 59 53 chr11 28817585 28817721 -121965832 + MIR SINE MIR 22 156 -106 2138 114 0 0 chr11 28817721 28818002 -121965551 + AluSq SINE Alu 1 281 -32 647 0 26 0 chr11 28818002 28818080 -121965473 + (TAAAA)n Simple_repeat Simple_repeat 1 80 0 370 270 59 53 chr11 28818080 28818094 -121965459 + MIR SINE MIR 155 174 -88 974 282 131 31 chr11 28818156 28818613 -121964940 + MLT1J LTR MaLR 1 503 -8 490 264 43 45 chr11 28818954 28819123 -121964430 - MIR SINE MIR -62 146 30 1575 282 44 31 chr11 28819256 28819774 -121963779 - MLT1H1 LTR MaLR -23 532 8 2179 157 12 56 chr11 28819846 28820076 -121963477 - MLT1B LTR MaLR 0 390 184 2277 68 54 0 chr11 28820076 28820356 -121963197 - AluSp SINE Alu -18 295 1 2179 157 12 56 chr11 28820356 28820533 -121963020 - MLT1B LTR MaLR -206 184 1 252 343 65 9 chr11 28820550 28820658 -121962895 - MIR SINE MIR -65 143 30 404 318 0 0 chr11 28821534 28821641 -121961912 + MIR SINE MIR 3 109 -153 245 294 24 0 chr11 28821900 28821985 -121961568 + MIR3 SINE MIR 106 192 -16 1788 190 0 0 chr11 28822064 28822374 -121961179 + AluJb SINE Alu 3 312 0 276 362 17 23 chr11 28822889 28823066 -121960487 - L3 LINE CR1 -351 1226 1051 237 253 165 0 chr11 28823435 28823514 -121960039 + MER5A DNA MER1_type 11 102 -87 244 286 0 12 chr11 28829033 28829117 -121954436 + G-rich Low_complexity Low_complexity 2 84 0 311 202 11 0 chr11 28830256 28830345 -121953208 + CT-rich Low_complexity Low_complexity 3 92 0 210 91 0 0 chr11 28831460 28831493 -121952060 + (GGGGA)n Simple_repeat Simple_repeat 4 36 0 288 0 0 0 chr11 28832160 28832192 -121951361 + (CA)n Simple_repeat Simple_repeat 2 33 0 465 84 0 0 chr11 28833567 28833638 -121949915 + (TG)n Simple_repeat Simple_repeat 2 72 0 301 311 192 0 chr11 28834185 28834336 -121949217 - MIR SINE MIR -51 211 32 24 32 0 0 chr11 28834434 28834465 -121949088 + AT_rich Low_complexity Low_complexity 1 31 0 285 301 14 0 chr11 28834673 28834746 -121948807 - L3 LINE CR1 -4 1573 1500 277 385 10 0 chr11 28834957 28835053 -121948500 - L2 LINE L2 -36 3236 3140 209 327 64 45 chr11 28835121 28835277 -121948276 + MIR3 SINE MIR 21 179 -29 22 0 0 0 chr11 28836093 28836115 -121947438 + AT_rich Low_complexity Low_complexity 1 22 0 1696 159 76 0 chr11 28836855 28837144 -121946409 + AluSx SINE Alu 2 312 0 1258 177 70 49 chr11 28837161 28837238 -121946315 - Charlie4a DNA MER1_type -1470 491 417 2160 122 7 0 chr11 28837238 28837533 -121946020 + AluSx SINE Alu 1 297 -15 1258 177 70 49 chr11 28837533 28837799 -121945754 - Charlie4a DNA MER1_type -1544 417 141 396 267 0 43 chr11 28838343 28838459 -121945094 - MIR SINE MIR -126 136 26 652 215 107 30 chr11 28838750 28838983 -121944570 - MIR SINE MIR 0 262 12 224 305 37 12 chr11 28840368 28840450 -121943103 - MIR SINE MIR -99 109 26 2436 89 0 0 chr11 28840925 28841228 -121942325 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr11 28841295 28841318 -121942235 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr11 28841541 28841572 -121941981 + AT_rich Low_complexity Low_complexity 1 31 0 653 330 122 6 chr11 28843389 28843701 -121939852 + L3b LINE CR1 1102 1449 -134 248 259 95 52 chr11 28844128 28844244 -121939309 + L2 LINE L2 3191 3311 -2 253 278 52 35 chr11 28847180 28847295 -121936258 + MIR SINE MIR 37 153 -109 286 277 51 87 chr11 28847653 28847848 -121935705 - MER5A DNA MER1_type -1 188 1 261 0 0 0 chr11 28849576 28849605 -121933948 + (T)n Simple_repeat Simple_repeat 1 29 0 261 0 0 0 chr11 28850506 28850535 -121933018 + (T)n Simple_repeat Simple_repeat 1 29 0 288 0 0 0 chr11 28851565 28851597 -121931956 + (TC)n Simple_repeat Simple_repeat 2 33 0 252 143 0 0 chr11 28851597 28851639 -121931914 + (TG)n Simple_repeat Simple_repeat 2 43 0 183 80 0 0 chr11 28851639 28851664 -121931889 + (GA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr11 28853519 28853542 -121930011 + AT_rich Low_complexity Low_complexity 1 23 0 835 336 96 34 chr11 28855262 28855855 -121927698 + L3 LINE CR1 641 1270 -307 230 244 192 0 chr11 28855981 28856059 -121927494 + L3 LINE CR1 1250 1342 -235 1759 168 0 4 chr11 28856172 28856452 -121927101 + AluJb SINE Alu 1 279 -33 227 77 0 26 chr11 28856453 28856492 -121927061 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 211 298 0 0 chr11 28857220 28857277 -121926276 - L2 LINE L2 0 3272 3216 180 0 0 0 chr11 28858185 28858205 -121925348 + (TG)n Simple_repeat Simple_repeat 1 20 0 1813 94 14 35 chr11 28858651 28858937 -121924616 + L1PA10 LINE L1 5887 6166 -2 382 306 45 30 chr11 28859206 28859408 -121924145 - MIR SINE MIR -32 230 30 26 0 0 0 chr11 28859628 28859654 -121923899 + AT_rich Low_complexity Low_complexity 1 26 0 30868 102 9 56 chr11 28859780 28866218 -121917335 + L1PA7 LINE L1 10 6138 -16 33 43 0 0 chr11 28866218 28866265 -121917288 + AT_rich Low_complexity Low_complexity 1 47 0 291 309 69 51 chr11 28866280 28866455 -121917098 - MER5B DNA MER1_type 0 178 1 554 259 198 15 chr11 28866679 28866876 -121916677 + MIR SINE MIR 30 262 0 341 256 37 0 chr11 28867391 28867473 -121916080 + MIR SINE MIR 33 117 -145 283 285 54 46 chr11 28867925 28868055 -121915498 + L2 LINE L2 3177 3307 -6 10568 114 14 7 chr11 28869411 28871046 -121912507 - L1P LINE L1 -4497 1649 3 1694 165 4 22 chr11 28871572 28871845 -121911708 - AluJo SINE Alu -44 268 1 22 0 0 0 chr11 28872079 28872101 -121911452 + AT_rich Low_complexity Low_complexity 1 22 0 438 264 54 8 chr11 28872669 28872798 -121910755 + MIR SINE MIR 72 206 -56 22 35 0 0 chr11 28873066 28873095 -121910458 + AT_rich Low_complexity Low_complexity 1 29 0 2094 140 3 56 chr11 28873480 28873836 -121909717 + MER1B DNA MER1_type 1 337 0 1564 107 14 5 chr11 28874124 28874340 -121909213 + AluSg/x SINE Alu 85 302 -10 370 254 71 47 chr11 28874819 28874988 -121908565 - L2 LINE L2 -712 2602 2430 298 118 0 0 chr11 28875549 28875600 -121907953 - AluSp/q SINE Alu -1 302 252 * 352 165 51 0 chr11 28875595 28875674 -121907879 + HsTC2 DNA Tc2 1816 1898 0 180 0 0 0 chr11 28876685 28876705 -121906848 + (CA)n Simple_repeat Simple_repeat 1 20 0 296 327 168 0 chr11 28877027 28877140 -121906413 + MIR3 SINE MIR 36 167 -41 211 102 41 20 chr11 28879062 28879111 -121904442 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 204 237 0 17 chr11 28881040 28881099 -121902454 + T-rich Low_complexity Low_complexity 2 59 0 24 77 0 0 chr11 28881257 28881309 -121902244 + AT_rich Low_complexity Low_complexity 1 52 0 31 68 0 0 chr11 28881369 28881428 -121902125 + AT_rich Low_complexity Low_complexity 1 59 0 943 193 34 0 chr11 28884539 28884715 -121898838 + MER5A DNA MER1_type 8 189 0 902 205 29 19 chr11 28886664 28886893 -121896660 + MIR SINE MIR 21 252 -10 558 276 42 36 chr11 28887388 28887580 -121895973 - MIR SINE MIR -21 241 49 476 302 148 10 chr11 28888565 28888767 -121894786 - MIR SINE MIR -25 237 8 553 185 81 64 chr11 28888768 28888880 -121894673 + MER5B DNA MER1_type 3 121 -57 2855 13 0 0 chr11 28888880 28889193 -121894360 - AluYb8 SINE Alu -4 314 2 553 185 81 64 chr11 28889193 28889253 -121894300 + MER5B DNA MER1_type 121 178 0 251 314 51 64 chr11 28890409 28890565 -121892988 + L2 LINE L2 2551 2704 -610 349 270 90 0 chr11 28890879 28890990 -121892563 - MIR SINE MIR -94 168 48 312 91 0 0 chr11 28891038 28891082 -121892471 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 197 335 80 35 chr11 28891115 28891315 -121892238 + L2 LINE L2 2749 2957 -357 479 196 23 0 chr11 28891379 28891512 -121892041 - MER53 DNA DNA -53 136 1 1743 172 0 30 chr11 28891730 28892026 -121891527 + AluJo SINE Alu 1 287 -25 184 218 136 73 chr11 28892320 28892430 -121891123 + L2 LINE L2 3156 3272 0 671 224 17 62 chr11 28892543 28892722 -121890831 + MER5B DNA MER1_type 2 172 -6 368 312 15 79 chr11 28893341 28893478 -121890075 + MIR3 SINE MIR 14 135 -73 1175 189 80 117 chr11 28893478 28893854 -121889699 - MLT1A1 LTR MaLR -2 363 2 368 312 15 79 chr11 28893854 28893918 -121889635 + MIR3 SINE MIR 135 202 -6 569 317 24 0 chr11 28894026 28894193 -121889360 + MIR3 SINE MIR 24 194 -14 207 161 0 0 chr11 28894355 28894386 -121889167 + polypurine Low_complexity Low_complexity 1 31 0 511 272 63 11 chr11 28895148 28895339 -121888214 + MIR SINE MIR 6 206 -56 395 238 154 42 chr11 28895743 28895886 -121887667 - MIR SINE MIR -102 160 2 1959 153 0 0 chr11 28895919 28896207 -121887346 - AluSx SINE Alu -24 288 1 382 277 92 0 chr11 28896599 28896718 -121886835 + MIR3 SINE MIR 73 202 -6 2931 178 73 68 chr11 28897234 28897921 -121885632 + LTR8 LTR ERV1 2 691 0 3333 98 162 0 chr11 28897921 28898434 -121885119 + HUERS-P1 LTR ERV1 1 596 -5667 365 320 90 34 chr11 28898599 28898833 -121884720 - MIR SINE MIR -9 253 7 416 241 145 36 chr11 28898856 28899022 -121884531 + MIR SINE MIR 79 262 0 288 368 32 32 chr11 28899452 28899577 -121883976 - L2 LINE L2 -23 3249 3125 191 294 109 25 chr11 28900690 28900809 -121882744 + MIR3 SINE MIR 32 160 -48 235 298 85 64 chr11 28900824 28900965 -121882588 - MER5A DNA MER1_type -24 165 22 2735 207 23 15 chr11 28901099 28901620 -121881933 - MLT1F LTR MaLR -2 540 16 429 335 97 6 chr11 28902014 28902190 -121881363 - MIR SINE MIR -37 225 34 230 288 41 27 chr11 28902830 28902903 -121880650 - MIR SINE MIR -21 241 168 181 324 15 15 chr11 28902960 28903028 -121880525 - MIR3 SINE MIR -7 201 134 246 297 184 0 chr11 28903439 28903566 -121879987 + MIR SINE MIR 2 149 -62 451 309 63 0 chr11 28904141 28904267 -121879286 + MIR SINE MIR 108 241 -21 221 293 17 0 chr11 28904289 28904347 -121879206 + L2 LINE L2 3211 3269 -3 249 262 224 9 chr11 28904599 28904706 -121878847 - MIR SINE MIR -60 148 19 403 188 70 10 chr11 28905149 28905249 -121878304 + MER21B LTR ERV1 3 106 -757 * 469 169 0 0 chr11 28905247 28905318 -121878235 + MER21B LTR ERV1 19 89 -774 3446 198 93 7 chr11 28905319 28906068 -121877485 + MER21B LTR ERV1 41 854 -9 415 253 0 96 chr11 28906233 28906379 -121877174 + MIR SINE MIR 53 184 -78 2034 164 49 0 chr11 28906392 28906721 -121876832 - MER7A DNA MER2_type -2 344 2 183 324 27 18 chr11 28907273 28907384 -121876169 + L3b LINE CR1 1219 1330 -253 949 298 8 0 chr11 28907427 28907685 -121875868 + MIR SINE MIR 1 260 -2 2181 120 23 0 chr11 28908087 28908386 -121875167 - AluSx SINE Alu -2 310 5 248 156 0 44 chr11 28909461 28909506 -121874047 + MLT2A2 LTR ERVL 93 135 -318 533 210 154 43 chr11 28910051 28910213 -121873340 - MER5A DNA MER1_type -6 183 4 239 276 35 69 chr11 28910252 28910339 -121873214 - MER5B DNA MER1_type -58 120 37 2098 142 24 35 chr11 28910628 28911001 -121872552 + MLT1B LTR MaLR 22 390 0 346 327 9 0 chr11 28911066 28911179 -121872374 + MIR3 SINE MIR 65 178 -30 312 340 34 48 chr11 28911472 28911619 -121871934 - MIR3 SINE MIR -46 162 18 2208 109 118 12 chr11 28912799 28913128 -121870425 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 28913825 28913846 -121869707 + AT_rich Low_complexity Low_complexity 1 21 0 428 313 84 69 chr11 28914050 28914382 -121869171 - L2 LINE L2 0 3272 2936 237 324 0 0 chr11 28915935 28916006 -121867547 - L2 LINE L2 -2 3311 3241 416 253 27 163 chr11 28916741 28916998 -121866555 - MIR SINE MIR 0 262 41 305 238 248 0 chr11 28917093 28917198 -121866355 - MIR SINE MIR -62 146 16 28 0 0 0 chr11 28918348 28918376 -121865177 + AT_rich Low_complexity Low_complexity 1 28 0 586 184 0 0 chr11 28918456 28918559 -121864994 - L1MA10 LINE L1 -37 6297 6195 199 308 128 0 chr11 28918590 28918668 -121864885 + MIR SINE MIR 78 165 -97 2498 39 0 0 chr11 28918668 28918951 -121864602 + AluY SINE Alu 1 283 -28 201 211 0 99 chr11 28919443 28919514 -121864039 + L3 LINE CR1 1162 1225 -352 222 274 245 0 chr11 28919527 28919633 -121863920 - L2 LINE L2 0 3313 3182 416 343 97 46 chr11 28919807 28920198 -121863355 + MLT1K LTR MaLR 147 557 -31 335 303 199 17 chr11 28920401 28920642 -121862911 + L3 LINE CR1 1220 1504 -73 402 303 66 71 chr11 28920676 28920887 -121862666 - L2 LINE L2 0 3272 3063 268 287 23 0 chr11 28921163 28921250 -121862303 - MIR SINE MIR 0 262 174 716 255 118 10 chr11 28921915 28922119 -121861434 + MIR SINE MIR 37 262 0 566 238 12 19 chr11 28922193 28922353 -121861200 - L2 LINE L2 -7 3306 3148 780 289 135 53 chr11 28922549 28922779 -121860774 + L2 LINE L2 2483 2693 -620 2171 127 3 0 chr11 28922779 28923087 -121860466 + AluSx SINE Alu 1 309 -3 780 289 135 53 chr11 28923087 28923641 -121859912 + L2 LINE L2 2693 3313 0 11869 127 29 14 chr11 28923993 28925835 -121857718 + Tigger1 DNA MER2_type 548 2418 0 295 229 0 19 chr11 28927757 28927862 -121855691 + CT-rich Low_complexity Low_complexity 3 105 0 655 188 168 48 chr11 28928840 28928924 -121854629 - MER33 DNA MER1_type -2352 233 160 330 26 0 0 chr11 28928924 28928963 -121854590 + (TG)n Simple_repeat Simple_repeat 2 40 0 655 188 168 48 chr11 28928963 28929086 -121854467 - MER33 DNA MER1_type -2425 160 1 333 265 90 60 chr11 28929212 28929378 -121854175 - MIR SINE MIR -86 176 6 321 103 52 35 chr11 28929457 28929515 -121854038 - MER103 DNA DNA -49 117 59 529 220 21 43 chr11 28930100 28930241 -121853312 - MIR SINE MIR -97 165 28 2799 140 5 29 chr11 28930305 28930748 -121852805 - L1PB3 LINE L1 0 6154 5723 2634 156 5 26 chr11 28930748 28931392 -121852161 - L1PB3 LINE L1 -706 5445 4810 204 40 0 0 chr11 28931434 28931459 -121852094 + (TG)n Simple_repeat Simple_repeat 1 25 0 280 279 83 106 chr11 28932706 28932960 -121850593 - MIR SINE MIR -2 260 13 935 265 143 25 chr11 28932965 28933516 -121850037 - L2 LINE L2 0 3313 2697 1985 216 120 128 chr11 28933534 28933897 -121849656 + L1MC4a LINE L1 6604 6968 -840 279 93 0 0 chr11 28933897 28933940 -121849613 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 1985 216 120 128 chr11 28933940 28934287 -121849266 + L1MC4a LINE L1 6968 7316 -492 930 69 0 0 chr11 28934287 28934403 -121849150 + AluSp/q SINE Alu 190 305 -8 1985 216 120 128 chr11 28934403 28934791 -121848762 + L1MC4a LINE L1 7316 7808 0 1057 231 32 12 chr11 28934836 28935087 -121848466 - L2 LINE L2 -627 2687 2432 418 272 30 99 chr11 28935108 28935199 -121848354 - MIR SINE MIR -46 216 120 672 275 108 33 chr11 28935199 28935439 -121848114 - MIR SINE MIR -3 259 2 418 272 30 99 chr11 28935439 28935579 -121847974 - MIR SINE MIR -142 120 1 597 310 56 15 chr11 28936247 28936444 -121847109 + MIR SINE MIR 23 227 -35 281 345 31 42 chr11 28937652 28937913 -121845640 - L1ME LINE L1 -285 5881 5624 * 325 298 77 23 chr11 28937906 28938164 -121845389 + L1M2 LINE L1 5318 5587 -591 29 60 0 0 chr11 28938195 28938245 -121845308 + AT_rich Low_complexity Low_complexity 1 50 0 2128 122 0 0 chr11 28938271 28938574 -121844979 + AluSg SINE Alu 1 303 0 1150 147 11 0 chr11 28938574 28938764 -121844789 + L1MA4A LINE L1 6112 6303 0 232 364 0 0 chr11 28938793 28938859 -121844694 - L2 LINE L2 -49 3264 3199 339 265 12 0 chr11 28938876 28938959 -121844594 + L2 LINE L2 3189 3272 0 526 267 12 25 chr11 28939158 28939319 -121844234 - MIR SINE MIR -90 172 14 202 320 244 13 chr11 28940022 28940100 -121843453 + L2 LINE L2 3134 3229 -43 1925 128 24 0 chr11 28940581 28940878 -121842675 - AluSx SINE Alu -8 304 1 377 322 17 63 chr11 28940878 28941052 -121842501 - L2 LINE L2 -6 3266 3101 2063 202 31 49 chr11 28941121 28941635 -121841918 - MLT1D LTR MaLR 0 505 1 321 154 15 15 chr11 28941639 28941704 -121841849 + L2 LINE L2 3207 3271 -1 658 167 24 8 chr11 28942269 28942395 -121841158 + L2 LINE L2 3186 3313 0 * 756 268 48 10 chr11 28942374 28942583 -121840970 + MIR SINE MIR 11 227 -35 314 328 9 43 chr11 28943223 28943342 -121840211 - L2 LINE L2 0 3272 3161 725 137 16 33 chr11 28943743 28943925 -121839628 + CT-rich Low_complexity Low_complexity 2 180 0 361 267 0 0 chr11 28946267 28946342 -121837211 + MER5A DNA MER1_type 1 75 -114 324 81 129 0 chr11 28946367 28946429 -121837124 - L1MA7 LINE L1 -11 6280 6211 2032 164 15 22 chr11 28946464 28946866 -121836687 - L1MA7 LINE L1 -315 5976 5578 554 250 101 27 chr11 28947855 28948043 -121835510 + MIR SINE MIR 61 262 0 352 252 156 7 chr11 28948058 28948193 -121835360 + MIR SINE MIR 98 252 -10 654 217 111 57 chr11 28948513 28948863 -121834690 - HAL1 LINE L1 -72 2435 2067 309 296 22 0 chr11 28948914 28949049 -121834504 + LTR37A LTR ERV1 47 184 -242 2075 205 60 33 chr11 28949053 28949671 -121833882 + MLT1E2 LTR MaLR 1 624 -2 463 247 56 6 chr11 28949720 28949898 -121833655 + LTR37A LTR ERV1 240 426 0 1469 273 88 28 chr11 28949916 28950586 -121832967 - HAL1 LINE L1 -475 2032 1323 1138 321 142 32 chr11 28950593 28951780 -121831773 + L2 LINE L2 1948 3269 -44 521 279 58 21 chr11 28951824 28952014 -121831539 + MIR SINE MIR 51 247 -15 391 259 59 71 chr11 28952313 28952552 -121831001 + MLT1L LTR MaLR 91 326 -289 232 291 74 27 chr11 28954848 28954950 -121828603 + L2 LINE L2 2608 2721 -593 1602 159 22 12 chr11 28954950 28955271 -121828282 - MER33 DNA MER1_type 0 324 1 232 291 74 27 chr11 28955271 28955316 -121828237 + L2 LINE L2 2721 2762 -552 319 265 143 0 chr11 28955349 28955447 -121828106 + L2 LINE L2 3196 3307 -6 29 0 0 0 chr11 28955660 28955689 -121827864 + AT_rich Low_complexity Low_complexity 1 29 0 2456 183 24 36 chr11 28955771 28956274 -121827279 - MLT1D LTR MaLR -4 501 5 1194 261 64 50 chr11 28956516 28957075 -121826478 + MLT1F1 LTR MaLR 1 567 0 760 141 28 11 chr11 28957077 28957254 -121826299 + CT-rich Low_complexity Low_complexity 1 180 0 281 289 73 21 chr11 29007339 29007800 -121775753 - L1ME LINE L1 -4885 1487 1015 1505 155 77 19 chr11 29007821 29008144 -121775409 - MER2 DNA MER2_type -1 343 2 378 201 31 16 chr11 29008706 29008823 -121774730 - L1ME LINE L1 -5956 416 194 1829 182 3 0 chr11 29009540 29009837 -121773716 + AluJb SINE Alu 1 298 -14 405 280 42 55 chr11 29009870 29010177 -121773376 - L1ME LINE L1 -364 5757 5455 339 230 86 99 chr11 29010179 29010331 -121773222 - L1MC5 LINE L1 -52 7909 7760 1730 38 9 0 chr11 29010332 29010543 -121773010 + L1PA4 LINE L1 5943 6155 0 21 0 0 0 chr11 29010543 29010564 -121772989 + AT_rich Low_complexity Low_complexity 1 21 0 550 222 56 12 chr11 29010586 29010748 -121772805 + MER58 DNA MER1_type 20 188 -2232 286 160 80 60 chr11 29010827 29010927 -121772626 - L1MC5 LINE L1 -317 7644 7543 327 118 0 0 chr11 29010983 29011034 -121772519 - MADE1 DNA Mariner 0 80 30 2764 267 62 31 chr11 29011230 29012322 -121771231 - L2 LINE L2 -1 3312 2175 23 68 0 0 chr11 29013118 29013162 -121770391 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr11 29014885 29014917 -121768636 + AT_rich Low_complexity Low_complexity 1 32 0 182 378 104 7 chr11 29014929 29015064 -121768489 + L2 LINE L2 2610 2757 -557 453 311 19 14 chr11 29015646 29015855 -121767698 - L1ME LINE L1 -341 5780 5571 217 244 0 0 chr11 29016043 29016088 -121767465 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 332 327 9 0 chr11 29016491 29016604 -121766949 + MER94 DNA DNA 7 120 -14 427 281 31 16 chr11 29016750 29016878 -121766675 - MIR SINE MIR -62 146 17 1385 170 111 3 chr11 29016985 29017291 -121766262 - MER44D DNA MER2_type 0 609 1 284 290 19 9 chr11 29017333 29017440 -121766113 + MLT1G1 LTR MaLR 7 114 -481 695 315 36 9 chr11 29018045 29018264 -121765289 - MIR SINE MIR -36 226 2 784 220 72 68 chr11 29018983 29019219 -121764334 + MIR SINE MIR 13 249 -13 524 277 27 96 chr11 29019625 29019732 -121763821 + MIR SINE MIR 41 127 -135 1766 192 0 26 chr11 29019732 29020034 -121763519 + AluJb SINE Alu 3 296 -16 524 277 27 96 chr11 29020034 29020146 -121763407 + MIR SINE MIR 127 245 -17 358 301 106 0 chr11 29020302 29020501 -121763052 - L2 LINE L2 -221 3051 2832 692 234 141 35 chr11 29021027 29021254 -121762299 + MIR SINE MIR 7 257 -5 21 57 0 0 chr11 29021495 29021530 -121762023 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr11 29021537 29021569 -121761984 + AT_rich Low_complexity Low_complexity 1 32 0 235 241 0 35 chr11 29021931 29021989 -121761564 - MIR SINE MIR -136 72 17 419 324 82 0 chr11 29022030 29022200 -121761353 - L2 LINE L2 -3 3269 3086 492 314 238 0 chr11 29022590 29022775 -121760778 + MIR SINE MIR 34 262 0 265 330 0 0 chr11 29022999 29023090 -121760463 + MLT1H1 LTR MaLR 5 95 -460 360 233 89 8 chr11 29023204 29023328 -121760225 + MLT1H1 LTR MaLR 157 293 -280 320 229 189 10 chr11 29023377 29023534 -121760019 + MLT1G1 LTR MaLR 408 593 -2 449 330 87 52 chr11 29023863 29024149 -121759404 - L2 LINE L2 -5 3267 2950 494 314 75 4 chr11 29024149 29024388 -121759165 + MIR SINE MIR 5 260 -2 449 330 87 52 chr11 29024388 29024573 -121758980 - L2 LINE L2 -322 2950 2773 1975 123 89 60 chr11 29024639 29024859 -121758694 - MSTA LTR MaLR 0 428 216 2048 120 0 7 chr11 29024859 29025162 -121758391 - AluSx SINE Alu 0 301 1 1975 123 89 60 chr11 29025162 29025356 -121758197 - MSTA LTR MaLR -212 216 1 352 336 9 58 chr11 29025618 29025841 -121757712 - L2 LINE L2 -553 2761 2550 211 219 0 62 chr11 29025991 29026055 -121757498 - L2 LINE L2 0 3313 3254 504 261 14 14 chr11 29027262 29027401 -121756152 - MIR SINE MIR -31 177 32 793 210 20 115 chr11 29027742 29027837 -121755716 - MER45C DNA AcHobo -628 953 851 1877 153 10 10 chr11 29027837 29028145 -121755408 + AluJb SINE Alu 1 308 -4 793 210 20 115 chr11 29028145 29028301 -121755252 - MER45C DNA AcHobo -730 851 726 1758 179 3 3 chr11 29029337 29029639 -121753914 - AluJo SINE Alu -10 302 1 1190 117 35 0 chr11 29029756 29029953 -121753600 + MLT1B LTR MaLR 1 204 -186 659 263 0 25 chr11 29029953 29030151 -121753402 - L1ME2 LINE L1 -112 6052 5860 932 114 8 0 chr11 29030152 29030283 -121753270 - AluJb SINE Alu -180 132 1 4198 214 88 42 chr11 29030289 29032284 -121751269 - L1MC4 LINE L1 -743 5403 3797 403 231 0 0 chr11 29032321 29032399 -121751154 + LTR50 LTR ERVL 393 470 -325 540 305 13 0 chr11 29032525 29032676 -121750877 - L3 LINE CR1 -1 1576 1424 836 269 45 21 chr11 29033045 29033287 -121750266 + MIR SINE MIR 8 255 -7 2478 130 47 5 chr11 29033887 29034294 -121749259 - MSTA LTR MaLR 0 428 5 2266 93 3 3 chr11 29034391 29034681 -121748872 + AluSc SINE Alu 1 290 -19 472 248 26 0 chr11 29034769 29034882 -121748671 - MIR SINE MIR -116 146 31 1899 192 55 47 chr11 29035075 29035548 -121748005 + MLT2B1 LTR ERVL 5 481 -39 285 98 0 0 chr11 29035563 29035604 -121747949 + (TG)n Simple_repeat Simple_repeat 2 42 0 346 105 0 0 chr11 29035613 29035670 -121747883 + MLT2B1 LTR ERVL 464 520 0 431 196 29 0 chr11 29036384 29036486 -121747067 - MER69 DNA AcHobo -386 2140 2036 2054 241 41 25 chr11 29036493 29037052 -121746501 - MER69 DNA AcHobo -1958 568 1 23 33 0 0 chr11 29037132 29037162 -121746391 + AT_rich Low_complexity Low_complexity 1 30 0 2192 81 14 11 chr11 29037601 29037884 -121745669 - AluSc SINE Alu -17 292 9 3627 101 11 2 chr11 29038097 29038621 -121744932 - MER41A LTR ERV1 -23 531 3 8772 95 26 6 chr11 29038622 29039952 -121743601 - MER41A-int LTR ERV1 0 5946 4590 2567 140 91 26 chr11 29039949 29040522 -121743031 - MER41A-int LTR ERV1 -1542 3473 2864 * 4417 123 71 1 chr11 29040518 29041251 -121742302 - MER41A-int LTR ERV1 -3000 2946 2163 788 85 0 8 chr11 29041243 29041361 -121742192 - MER41A-int LTR ERV1 -3929 2017 1901 * 2175 120 63 0 chr11 29041362 29041713 -121741840 - MER41A-int LTR ERV1 -4184 1762 1390 2467 161 29 5 chr11 29041715 29042161 -121741392 - MER41A-int LTR ERV1 -7299 457 1 3384 123 32 0 chr11 29042167 29042697 -121740856 - MER41A LTR ERV1 -7 547 1 238 320 13 13 chr11 29042762 29042840 -121740713 - MER5B DNA MER1_type -37 141 64 198 300 0 17 chr11 29042865 29042925 -121740628 + L2 LINE L2 3255 3313 0 272 233 137 0 chr11 29043033 29043106 -121740447 - L2 LINE L2 -1 3312 3230 233 273 23 23 chr11 29044593 29044681 -121738872 - MIR3 SINE MIR -15 193 106 2121 168 12 16 chr11 29044792 29045221 -121738332 - L1MC3 LINE L1 -15 7770 7344 376 313 55 37 chr11 29045221 29045384 -121738169 - MIR SINE MIR -96 166 1 261 139 0 0 chr11 29045468 29045511 -121738042 + (TAGG)n Simple_repeat Simple_repeat 1 43 0 1968 137 20 0 chr11 29045960 29046082 -121737471 + AluSx SINE Alu 1 119 -193 207 0 0 0 chr11 29046082 29046105 -121737448 + (CA)n Simple_repeat Simple_repeat 2 24 0 1968 137 20 0 chr11 29046105 29046275 -121737278 + AluSx SINE Alu 119 299 -13 341 322 88 57 chr11 29046843 29047194 -121736359 - MLT1K LTR MaLR -215 373 12 422 201 75 44 chr11 29047390 29047549 -121736004 - MER103 DNA DNA -2 164 1 1804 262 103 32 chr11 29047784 29047930 -121735623 - MER20B DNA MER1_type -10 773 639 185 81 0 27 chr11 29047930 29047967 -121735586 + (TAAAA)n Simple_repeat Simple_repeat 3 38 0 1804 262 103 32 chr11 29047967 29048541 -121735012 - MER20B DNA MER1_type -144 639 2 42165 38 0 2 chr11 29048646 29054816 -121728737 + L1PA3 LINE L1 8 6165 0 696 258 82 6 chr11 29055265 29055447 -121728106 + MIR SINE MIR 47 242 -20 2401 103 0 0 chr11 29055685 29055995 -121727558 + AluSx SINE Alu 2 311 -1 339 161 16 0 chr11 29056045 29056107 -121727446 + MIR SINE MIR 60 122 -86 314 304 68 68 chr11 29056439 29056630 -121726923 - MIR SINE MIR -52 210 20 235 254 73 0 chr11 29056693 29056748 -121726805 - MIR SINE MIR -72 190 132 230 362 147 9 chr11 29057296 29057412 -121726141 - L2 LINE L2 -8 3264 3133 828 223 59 25 chr11 29057431 29057633 -121725920 + MIR SINE MIR 29 237 -25 802 158 0 15 chr11 29057934 29058067 -121725486 - FLAM_C SINE Alu -12 131 1 489 325 10 41 chr11 29058077 29058271 -121725282 - MIR SINE MIR -70 192 5 827 229 112 87 chr11 29059218 29059712 -121723841 - MLT1H1 LTR MaLR -2 553 50 633 311 29 0 chr11 29059801 29060007 -121723546 - MIR SINE MIR -4 258 47 354 344 13 13 chr11 29060570 29060724 -121722829 - L2 LINE L2 -1 3312 3159 196 325 175 0 chr11 29061698 29061778 -121721775 - L2 LINE L2 -8 3264 3171 411 292 8 0 chr11 29061865 29061985 -121721568 - MLT1I LTR MaLR -4 405 285 309 261 27 9 chr11 29062060 29062171 -121721382 - MLT1I LTR MaLR -249 160 48 1790 292 129 22 chr11 29062711 29063043 -121720510 - L2 LINE L2 -69 3244 2949 875 87 79 0 chr11 29063043 29063170 -121720383 - MER85 DNA T2_type 0 139 3 1790 292 129 22 chr11 29063170 29063711 -121719842 - L2 LINE L2 -364 2949 2244 317 250 50 0 chr11 29064727 29064807 -121718746 - L2 LINE L2 -50 3263 3180 291 294 111 8 chr11 29065111 29065237 -121718316 - MIR SINE MIR -36 226 88 1700 251 27 47 chr11 29065460 29065973 -121717580 + LTR33 LTR ERVL 19 521 0 284 392 19 24 chr11 29066709 29066918 -121716635 + L2 LINE L2 2601 2808 -506 2314 116 129 5 chr11 29067058 29067439 -121716114 - MSTA LTR MaLR 0 428 1 538 293 88 26 chr11 29067643 29067875 -121715678 - MIR SINE MIR -11 251 9 243 263 113 75 chr11 29067948 29068071 -121715482 - MIR SINE MIR -50 212 78 2045 120 18 82 chr11 29068071 29068471 -121715082 + THE1C LTR MaLR 1 374 -1 243 263 113 75 chr11 29068471 29068533 -121715020 - MIR SINE MIR -184 78 20 34 24 0 0 chr11 29068810 29068851 -121714702 + AT_rich Low_complexity Low_complexity 1 41 0 347 235 20 0 chr11 29069394 29069492 -121714061 + MIR3 SINE MIR 105 204 -4 366 265 179 0 chr11 29069657 29069774 -121713779 + MIR3 SINE MIR 9 146 -62 332 287 23 32 chr11 29069854 29069957 -121713596 + MIR SINE MIR 20 119 -104 233 293 12 24 chr11 29070090 29070172 -121713381 - L2 LINE L2 -1 3312 3232 1920 134 10 10 chr11 29070458 29070757 -121712796 - AluSx SINE Alu -13 299 1 407 375 0 0 chr11 29070819 29070979 -121712574 + MIR SINE MIR 22 181 -81 835 167 0 0 chr11 29070991 29071117 -121712436 + FLAM_C SINE Alu 1 126 -17 220 259 12 59 chr11 29071150 29071235 -121712318 + MIR SINE MIR 179 259 -3 762 274 47 35 chr11 29072648 29072903 -121710650 - MIR SINE MIR -4 258 1 318 282 12 0 chr11 29072929 29073014 -121710539 + MIR3 SINE MIR 112 197 -11 314 296 11 45 chr11 29073451 29073630 -121709923 + C-rich Low_complexity Low_complexity 2 174 0 24 0 0 0 chr11 29073989 29074013 -121709540 + AT_rich Low_complexity Low_complexity 1 24 0 210 366 30 0 chr11 29075386 29075487 -121708066 + MIR SINE MIR 37 140 -122 269 265 24 0 chr11 29075534 29075617 -121707936 + MER94 DNA DNA 1 85 -49 22157 37 0 0 chr11 29077129 29080533 -121703020 + L1PA3 LINE L1 2529 5932 -223 4729 30 0 0 chr11 29080633 29081190 -121702363 + L1PA4 LINE L1 5592 6148 -7 31 26 0 0 chr11 29081190 29081228 -121702325 + AT_rich Low_complexity Low_complexity 1 38 0 2322 89 3 16 chr11 29081296 29081611 -121701942 - AluY SINE Alu 0 311 1 594 115 35 0 chr11 29081888 29082001 -121701552 + L1MC3 LINE L1 6981 7097 -688 235 333 10 0 chr11 29082001 29082097 -121701456 + MLT1F1 LTR MaLR 35 131 -436 2878 165 26 14 chr11 29082097 29082601 -121700952 + L1MC3 LINE L1 7196 7709 -76 1950 188 11 6 chr11 29082601 29082963 -121700590 - MLT1A1 LTR MaLR 0 365 2 2878 165 26 14 chr11 29082963 29083040 -121700513 + L1MC3 LINE L1 7709 7784 -1 23 54 0 0 chr11 29083049 29083086 -121700467 + AT_rich Low_complexity Low_complexity 1 37 0 265 269 144 38 chr11 29083445 29083605 -121699948 + MIR SINE MIR 84 260 -2 1651 203 0 29 chr11 29084043 29084353 -121699200 + AluJo SINE Alu 1 301 -11 24 0 0 0 chr11 29084397 29084421 -121699132 + AT_rich Low_complexity Low_complexity 1 24 0 217 413 37 10 chr11 29084710 29084890 -121698663 - MIR SINE MIR -56 206 21 3890 119 38 2 chr11 29085169 29085780 -121697773 + MER41B LTR ERV1 3 635 0 27 29 0 0 chr11 29086586 29086620 -121696933 + AT_rich Low_complexity Low_complexity 1 34 0 211 365 135 17 chr11 29086866 29087222 -121696331 + L2 LINE L2 2579 2976 -338 1334 51 45 0 chr11 29087388 29087566 -121695987 + L1PA4 LINE L1 5970 6155 0 219 295 82 66 chr11 29087749 29087871 -121695682 + L2 LINE L2 3132 3255 -17 421 261 17 0 chr11 29088703 29088822 -121694731 + LTR67 LTR ERVL 435 555 -2 2010 148 3 0 chr11 29089069 29089367 -121694186 - AluSx SINE Alu -13 299 1 1446 157 52 7 chr11 29089825 29090131 -121693422 + L1MA7 LINE L1 4584 4903 -1243 4323 154 52 47 chr11 29090232 29091307 -121692246 + L1MA7 LINE L1 5197 6289 -2 207 0 0 0 chr11 29092295 29092318 -121691235 + (GA)n Simple_repeat Simple_repeat 2 24 0 1742 158 12 98 chr11 29092910 29093310 -121690243 + MER47A DNA MER2_type 1 366 0 506 314 64 36 chr11 29093635 29093855 -121689698 + MIR SINE MIR 29 254 -8 1588 154 11 0 chr11 29094471 29094737 -121688816 + AluSx SINE Alu 44 312 0 316 210 177 0 chr11 29094743 29094867 -121688686 + MER20B DNA MER1_type 516 661 -122 220 171 0 0 chr11 29095514 29095549 -121688004 + (TCCA)n Simple_repeat Simple_repeat 4 38 0 1683 202 55 3 chr11 29097711 29098058 -121685495 - MLT1A1 LTR MaLR 0 365 1 589 298 98 9 chr11 29098339 29098554 -121684999 - MIR SINE MIR 0 262 29 24 0 0 0 chr11 29098681 29098705 -121684848 + AT_rich Low_complexity Low_complexity 1 24 0 320 237 69 116 chr11 29098808 29099040 -121684513 + MER112 DNA MER1_type 3 223 -37 636 232 135 43 chr11 29099044 29099229 -121684324 - MIR SINE MIR -31 231 30 516 323 123 55 chr11 29099636 29100335 -121683218 + L2 LINE L2 2580 3308 -5 21 0 0 0 chr11 29100441 29100462 -121683091 + AT_rich Low_complexity Low_complexity 1 21 0 310 216 68 0 chr11 29101953 29102027 -121681526 + HAL1b LINE L1 397 475 -873 21 0 0 0 chr11 29102360 29102381 -121681172 + AT_rich Low_complexity Low_complexity 1 21 0 435 232 0 0 chr11 29103472 29103554 -121679999 - Tigger3(Golem) DNA MER2_type -1 3028 2947 * 1982 155 155 3 chr11 29103550 29103931 -121679622 - Tigger3(Golem) DNA MER2_type -2589 440 2 602 139 19 28 chr11 29105239 29105347 -121678206 + AluJb SINE Alu 35 141 -171 348 111 0 0 chr11 29105367 29105430 -121678123 + (CATA)n Simple_repeat Simple_repeat 2 64 0 34 24 0 0 chr11 29105431 29105472 -121678081 + AT_rich Low_complexity Low_complexity 1 41 0 2376 63 7 0 chr11 29106055 29106356 -121677197 - AluY SINE Alu -8 303 1 417 280 37 0 chr11 29106615 29106722 -121676831 - MIR SINE MIR -118 144 34 517 302 29 17 chr11 29107168 29107340 -121676213 + MER5B DNA MER1_type 2 175 -3 1767 218 180 3 chr11 29107784 29108724 -121674829 + L1MC4a LINE L1 6810 8042 0 227 313 73 21 chr11 29109094 29109190 -121674363 + L2 LINE L2 2282 2382 -932 226 323 125 69 chr11 29109463 29109838 -121673715 + L2 LINE L2 2858 3253 -19 1642 186 13 10 chr11 29109969 29110280 -121673273 + AluJo SINE Alu 1 312 0 487 144 22 0 chr11 29110354 29110444 -121673109 + AluY SINE Alu 219 310 -1 911 168 12 0 chr11 29111258 29111419 -121672134 - L1PA15 LINE L1 -8 6157 5995 221 210 16 0 chr11 29112366 29112428 -121671125 + (CATA)n Simple_repeat Simple_repeat 2 64 0 269 139 0 14 chr11 29113076 29113148 -121670405 + (CAAAAA)n Simple_repeat Simple_repeat 1 71 0 3400 140 63 28 chr11 29113204 29113853 -121669700 + L1MA7 LINE L1 5620 6291 0 1477 240 150 39 chr11 29113883 29114514 -121669039 - L2 LINE L2 -285 3028 2286 599 270 207 11 chr11 29114596 29114866 -121668687 - L2 LINE L2 -1317 1997 1675 388 223 97 0 chr11 29115132 29115235 -121668318 + MIR SINE MIR 84 196 -66 346 225 12 150 chr11 29115357 29115517 -121668036 - MER20B DNA MER1_type -604 179 42 5276 82 25 8 chr11 29115920 29116673 -121666880 + MER4E LTR ERV1 1 766 0 947 183 113 5 chr11 29117250 29117463 -121666090 + MER46A DNA MER2_type 1 236 0 284 300 11 22 chr11 29117532 29117622 -121665931 + MIR3 SINE MIR 116 204 -4 503 262 117 0 chr11 29117880 29118025 -121665528 + L2 LINE L2 3152 3313 0 470 276 77 57 chr11 29118323 29118569 -121664984 - MIR SINE MIR 0 262 12 473 178 146 61 chr11 29118662 29118894 -121664659 - L1MA9 LINE L1 -22 6290 5953 463 299 41 46 chr11 29119046 29119240 -121664313 - MIR SINE MIR 0 262 70 231 254 45 0 chr11 29119376 29119443 -121664110 + L2 LINE L2 2718 2787 -527 198 0 0 0 chr11 29119789 29119811 -121663742 + (A)n Simple_repeat Simple_repeat 1 22 0 2014 125 0 0 chr11 29119926 29120215 -121663338 + AluSx SINE Alu 1 289 -23 197 276 52 0 chr11 29122262 29122320 -121661233 - L2 LINE L2 -66 3247 3187 375 226 47 19 chr11 29122642 29122748 -121660805 - MIR SINE MIR -36 226 118 788 258 127 0 chr11 29124855 29125084 -121658469 + MIR SINE MIR 5 262 0 341 194 0 0 chr11 29126898 29126970 -121656583 - L1MB7 LINE L1 -16 6168 6097 22 35 0 0 chr11 29127339 29127368 -121656185 + AT_rich Low_complexity Low_complexity 1 29 0 218 292 28 14 chr11 29127920 29127992 -121655561 - L3b LINE CR1 -220 1363 1291 21 0 0 0 chr11 29128439 29128460 -121655093 + AT_rich Low_complexity Low_complexity 1 21 0 41478 59 3 0 chr11 29129078 29135217 -121648336 + L1PA5 LINE L1 1 6152 -2 391 336 116 21 chr11 29135245 29135712 -121647841 - L1M4 LINE L1 -1087 5059 4549 204 163 0 0 chr11 29135731 29135774 -121647779 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 1068 206 123 8 chr11 29135774 29136017 -121647536 - AluJo SINE Alu -28 284 14 276 281 46 33 chr11 29136033 29136226 -121647327 - L1M4 LINE L1 -1594 4552 4357 2142 188 72 76 chr11 29136233 29136900 -121646653 + MER39 LTR ERV1 1 705 -2 409 336 93 53 chr11 29137252 29137447 -121646106 - L1M4 LINE L1 -2293 3853 3667 1785 154 31 0 chr11 29137447 29137733 -121645820 + AluJo SINE Alu 1 295 -17 409 336 93 53 chr11 29137733 29137826 -121645727 - L1M4 LINE L1 -2479 3667 3579 2444 69 0 0 chr11 29137826 29138130 -121645423 + AluY SINE Alu 1 304 -7 409 336 93 53 chr11 29138130 29138611 -121644942 - L1M4 LINE L1 -2567 3579 3052 318 295 57 26 chr11 29138671 29138838 -121644715 + MIR SINE MIR 37 206 -56 1558 143 68 11 chr11 29138982 29139261 -121644292 - MER2 DNA MER2_type -5 340 46 272 327 52 33 chr11 29139820 29139973 -121643580 - L3 LINE CR1 -206 1371 1216 25 0 0 0 chr11 29140057 29140082 -121643471 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr11 29140278 29140306 -121643247 + AT_rich Low_complexity Low_complexity 1 28 0 407 303 78 57 chr11 29140418 29140662 -121642891 - MIR SINE MIR -13 249 1 304 260 32 32 chr11 29140905 29141028 -121642525 + MIR SINE MIR 94 216 -46 581 330 54 12 chr11 29141237 29141570 -121641983 + L1MEc LINE L1 38 384 -6012 287 315 19 19 chr11 29141578 29141686 -121641867 - L2 LINE L2 -493 2821 2714 511 142 85 9 chr11 29142544 29142650 -121640903 - Charlie5 DNA MER1_type -173 2439 2326 446 196 18 9 chr11 29142728 29142840 -121640713 - Charlie5 DNA MER1_type -264 2348 2236 596 125 0 48 chr11 29142851 29142955 -121640598 - Charlie5 DNA MER1_type -2513 99 1 401 284 0 0 chr11 29143155 29143257 -121640296 - MIR SINE MIR -1 261 160 736 197 82 11 chr11 29143259 29143442 -121640111 - MER119 DNA MER1_type -11 572 377 1031 199 79 0 chr11 29143442 29143709 -121639844 - L1MA4 LINE L1 -14 6286 5999 1282 280 19 22 chr11 29143709 29143755 -121639798 - MER119 DNA MER1_type -190 393 348 1844 158 129 23 chr11 29143755 29144142 -121639411 + MSTA LTR MaLR 1 428 0 1282 280 19 22 chr11 29144142 29144463 -121639090 - MER119 DNA MER1_type -235 348 27 572 270 46 0 chr11 29144475 29144627 -121638926 - MIR SINE MIR -95 167 9 377 329 114 6 chr11 29144728 29144895 -121638658 + LTR33A LTR ERVL 1 185 -338 366 325 32 32 chr11 29145122 29145248 -121638305 - MER5A DNA MER1_type 0 189 64 208 174 22 0 chr11 29145267 29145313 -121638240 + (CAAA)n Simple_repeat Simple_repeat 3 49 0 611 238 66 7 chr11 29145766 29145917 -121637636 + MLT1G LTR MaLR 431 590 0 240 271 114 0 chr11 29147404 29147474 -121636079 - L2 LINE L2 -58 3214 3137 1059 243 49 82 chr11 29147697 29148195 -121635358 + L2 LINE L2 2632 3105 -208 2371 81 0 3 chr11 29148195 29148504 -121635049 - AluY SINE Alu -3 308 1 1059 243 49 82 chr11 29148504 29148705 -121634848 + L2 LINE L2 3105 3311 -2 804 299 113 53 chr11 29149706 29150140 -121633413 - L2 LINE L2 -1 3312 2853 1946 292 102 34 chr11 29150147 29150999 -121632554 - L2 LINE L2 -580 2734 1825 17113 61 0 4 chr11 29150999 29153196 -121630357 + L1M4c LINE L1 4 2188 -3960 16601 30 0 0 chr11 29153196 29155952 -121627601 + L1PA3 LINE L1 3400 6155 0 17113 61 0 4 chr11 29155952 29155965 -121627588 + L1M4c LINE L1 2188 2200 -3948 193 156 0 0 chr11 29155968 29156000 -121627553 - L2 LINE L2 -1496 1818 1787 205 305 76 8 chr11 29157364 29157482 -121626071 + MIR3 SINE MIR 81 206 -2 1105 222 16 8 chr11 29157482 29157739 -121625814 - MIR SINE MIR -1 261 3 553 299 77 21 chr11 29157785 29158019 -121625534 - MIR SINE MIR -2 260 14 517 130 50 0 chr11 29158192 29158292 -121625261 + L1MA8 LINE L1 6186 6290 -1 26 0 0 0 chr11 29158342 29158368 -121625185 + AT_rich Low_complexity Low_complexity 1 26 0 217 286 38 8 chr11 29159094 29159227 -121624326 + (TA)n Simple_repeat Simple_repeat 2 138 0 22 94 0 0 chr11 29160246 29160310 -121623243 + AT_rich Low_complexity Low_complexity 1 64 0 2777 10 0 0 chr11 29160313 29160618 -121622935 - AluYa5 SINE Alu -6 305 1 213 356 30 10 chr11 29160740 29160841 -121622712 + MIR SINE MIR 35 137 -125 1640 274 114 28 chr11 29160900 29161350 -121622203 - L2 LINE L2 -43 3270 2860 2388 101 0 0 chr11 29161350 29161656 -121621897 - AluSq SINE Alu -7 306 1 1640 274 114 28 chr11 29161656 29162065 -121621488 - L2 LINE L2 -453 2860 2332 3593 33 0 0 chr11 29162065 29162487 -121621066 - L1PA4 LINE L1 -254 5901 5480 1793 60 13 0 chr11 29162487 29162719 -121620834 + L1PA4 LINE L1 5916 6152 -3 377 270 169 67 chr11 29162719 29162897 -121620656 - L2 LINE L2 -979 2335 2140 35 0 0 0 chr11 29162958 29162993 -121620560 + AT_rich Low_complexity Low_complexity 1 35 0 284 327 20 30 chr11 29163684 29163785 -121619768 - MIR3 SINE MIR -44 164 65 189 0 0 0 chr11 29164057 29164078 -121619475 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 233 281 209 22 chr11 29165407 29165546 -121618007 + L3 LINE CR1 1077 1241 -336 281 198 13 32 chr11 29166104 29166261 -121617292 + (TA)n Simple_repeat Simple_repeat 1 154 0 956 261 32 20 chr11 29166482 29166731 -121616822 + MIR SINE MIR 11 262 0 21 0 0 0 chr11 29166891 29166912 -121616641 + AT_rich Low_complexity Low_complexity 1 21 0 777 130 9 187 chr11 29167022 29167252 -121616301 + 7SK RNA RNA 5 193 0 23 0 0 0 chr11 29167561 29167584 -121615969 + AT_rich Low_complexity Low_complexity 1 23 0 651 326 81 54 chr11 29167960 29168441 -121615112 - L2 LINE L2 -6 3307 2814 408 292 178 0 chr11 29168421 29168606 -121614947 - L2 LINE L2 -641 2673 2456 * 16104 173 41 5 chr11 29168611 29171508 -121612045 + L1MA2 LINE L1 15 3017 -4548 11818 151 33 17 chr11 29171519 29172532 -121611021 + L1MA2 LINE L1 4250 5246 -2477 2234 90 3 0 chr11 29172532 29172822 -121610731 + AluSp SINE Alu 1 291 -22 11818 151 33 17 chr11 29172822 29175220 -121608333 + L1MA2 LINE L1 5246 7722 -1 1165 309 240 10 chr11 29175231 29176152 -121607401 - L2 LINE L2 -849 2465 1333 586 237 83 56 chr11 29176214 29176480 -121607073 + L2 LINE L2 3041 3313 0 470 322 260 12 chr11 29176491 29176910 -121606643 - L2 LINE L2 -2092 1222 700 4821 113 20 0 chr11 29177998 29178708 -121604845 + L1PA15 LINE L1 5333 6056 -109 5949 39 9 18 chr11 29178829 29179598 -121603955 + L1PA7 LINE L1 5389 6150 -4 23 0 0 0 chr11 29179598 29179621 -121603932 + AT_rich Low_complexity Low_complexity 1 23 0 261 260 73 21 chr11 29179891 29179987 -121603566 + MER113 DNA MER1_type? 421 521 0 453 340 19 12 chr11 29180008 29180170 -121603383 + MIR3 SINE MIR 32 194 -14 811 168 41 31 chr11 29180502 29180698 -121602855 - L1MC3 LINE L1 0 7785 7588 3811 172 46 62 chr11 29180829 29181798 -121601755 - LTR13 LTR ERVK 0 954 1 23 0 0 0 chr11 29182235 29182258 -121601295 + AT_rich Low_complexity Low_complexity 1 23 0 238 267 33 0 chr11 29182440 29182500 -121601053 + MIR SINE MIR 88 149 -113 21 57 0 0 chr11 29182988 29183023 -121600530 + AT_rich Low_complexity Low_complexity 1 35 0 237 65 0 0 chr11 29183352 29183383 -121600170 + (CATA)n Simple_repeat Simple_repeat 2 32 0 13764 139 32 20 chr11 29183384 29185772 -121597781 - Tigger1 DNA MER2_type 0 2418 1 309 245 123 0 chr11 29186301 29186407 -121597146 - MER103 DNA DNA -12 154 36 27 0 0 0 chr11 29188067 29188094 -121595459 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr11 29189078 29189106 -121594447 + AT_rich Low_complexity Low_complexity 1 28 0 2127 119 3 7 chr11 29189128 29189431 -121594122 - AluSx SINE Alu -10 302 1 372 317 8 0 chr11 29189482 29189602 -121593951 + L1MEd LINE L1 45 165 -5954 649 257 52 24 chr11 29189739 29189949 -121593604 - MER97b DNA MER1_type? -836 217 2 503 313 110 67 chr11 29189971 29190600 -121592953 + L1MEd LINE L1 300 955 -5164 595 267 100 9 chr11 29190602 29190812 -121592741 - MIR SINE MIR -15 247 19 394 246 113 50 chr11 29190830 29191070 -121592483 + L1MEd LINE L1 1003 1257 -4862 227 129 14 71 chr11 29191865 29191935 -121591618 + T-rich Low_complexity Low_complexity 2 67 0 362 202 8 17 chr11 29191945 29192037 -121591516 - AluY SINE Alu -116 185 130 836 244 51 28 chr11 29192375 29192629 -121590924 - MIR SINE MIR 0 262 3 237 214 36 0 chr11 29192922 29192978 -121590575 - MER117 DNA MER1_type -134 63 6 245 273 61 50 chr11 29194239 29194338 -121589215 - MIR SINE MIR -98 164 65 660 158 41 47 chr11 29194376 29194547 -121589006 - Charlie1b DNA MER1_type 0 523 354 217 182 23 34 chr11 29194568 29194615 -121588938 + (TAA)n Simple_repeat Simple_repeat 2 88 0 34 24 0 0 chr11 29194615 29194656 -121588897 + AT_rich Low_complexity Low_complexity 1 41 0 1074 196 53 78 chr11 29194668 29194989 -121588564 - Charlie1b DNA MER1_type -210 313 1 1306 171 3 89 chr11 29194999 29195326 -121588227 - AluJo SINE Alu -13 299 1 4190 62 2 7 chr11 29197638 29198184 -121585369 - L1PA8 LINE L1 -3 6169 5627 192 300 100 12 chr11 29198988 29199068 -121584485 + MIR SINE MIR 53 139 -123 468 0 0 0 chr11 29199252 29199304 -121584249 + (TATAA)n Simple_repeat Simple_repeat 5 56 0 435 141 47 0 chr11 29200097 29200182 -121583371 - L1MB3 LINE L1 -1 6182 6094 347 281 98 61 chr11 29200755 29200919 -121582634 - MIR3 SINE MIR -21 187 18 438 366 144 9 chr11 29200934 29201281 -121582272 + L2 LINE L2 2521 2914 -400 1018 75 0 0 chr11 29201478 29201612 -121581941 - L1PA6 LINE L1 -6 6148 6015 247 362 21 0 chr11 29201699 29201793 -121581760 - MIR3 SINE MIR -28 180 85 38 61 0 0 chr11 29202169 29202235 -121581318 + AT_rich Low_complexity Low_complexity 1 66 0 284 315 22 0 chr11 29202776 29202868 -121580685 - MIR3 SINE MIR -6 202 109 442 278 161 39 chr11 29203014 29203269 -121580284 - L2 LINE L2 -15 3298 3013 229 347 142 16 chr11 29204726 29204916 -121578637 + MIR SINE MIR 3 216 -46 2752 207 16 14 chr11 29204953 29205514 -121578039 - MER68 LTR ERV1 0 562 1 1707 174 10 3 chr11 29206355 29206654 -121576899 + AluJo SINE Alu 1 301 -11 270 248 97 69 chr11 29206659 29206804 -121576749 - MIR SINE MIR -66 196 48 1510 180 9 41 chr11 29207394 29207711 -121575842 - AluJo SINE Alu 0 312 6 187 225 0 25 chr11 29207754 29207794 -121575759 + L2 LINE L2 3184 3222 -91 229 240 17 6 chr11 29208227 29208321 -121575232 - L1MC/D LINE L1 -331 5790 5744 251 275 62 0 chr11 29208368 29208448 -121575105 - L1MC/D LINE L1 -474 5647 5563 2255 79 0 0 chr11 29208539 29208853 -121574700 - AluY SINE Alu 0 314 1 941 117 0 10 chr11 29209421 29209656 -121573897 + (C)n Simple_repeat Simple_repeat 1 414 0 223 227 133 27 chr11 29210349 29210424 -121573129 + L3 LINE CR1 1490 1572 -5 299 229 193 0 chr11 29210655 29210764 -121572789 + MIR3 SINE MIR 65 194 -14 246 337 81 45 chr11 29211066 29211102 -121572451 + L2 LINE L2 2655 2688 -626 180 0 0 0 chr11 29211102 29211122 -121572431 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 246 337 81 45 chr11 29211122 29211394 -121572159 + L2 LINE L2 2688 2974 -340 737 282 61 38 chr11 29211902 29212164 -121571389 + MLT1J LTR MaLR 1 268 -243 434 282 40 36 chr11 29212232 29212493 -121571060 + L2 LINE L2 2378 2956 -357 258 337 60 18 chr11 29212612 29212778 -121570775 - L2 LINE L2 -151 3162 2990 960 300 43 10 chr11 29212832 29213135 -121570418 - MLT1I LTR MaLR -51 358 46 316 250 39 16 chr11 29213435 29213563 -121569990 - L1ME LINE L1 -346 5775 5645 396 328 128 15 chr11 29213916 29214120 -121569433 + MIR SINE MIR 20 246 -16 195 100 0 0 chr11 29214751 29214781 -121568772 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 499 165 0 21 chr11 29214781 29214878 -121568675 + L1MB7 LINE L1 6071 6165 -19 211 328 0 0 chr11 29215414 29215475 -121568078 + L2 LINE L2 3211 3271 -1 23 33 0 0 chr11 29215996 29216026 -121567527 + AT_rich Low_complexity Low_complexity 1 30 0 292 354 77 19 chr11 29216658 29216969 -121566584 - MARNA DNA Mariner -169 417 89 2188 121 0 6 chr11 29218991 29219304 -121564249 - AluSq SINE Alu 0 313 3 343 226 68 23 chr11 29219353 29219366 -121564187 - HAL1 LINE L1 -145 2362 2351 7748 13 23 0 chr11 29219366 29220292 -121563261 - L1PA3 LINE L1 0 6155 5228 343 226 68 23 chr11 29220292 29220411 -121563142 - HAL1 LINE L1 -156 2351 2224 37 23 0 0 chr11 29220557 29220601 -121562952 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr11 29221082 29221107 -121562446 + AT_rich Low_complexity Low_complexity 1 25 0 635 266 180 46 chr11 29221745 29222095 -121561458 - HAL1 LINE L1 -1847 660 264 28 79 0 0 chr11 29222188 29222251 -121561302 + AT_rich Low_complexity Low_complexity 1 63 0 276 53 0 0 chr11 29222357 29222395 -121561158 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 205 329 0 26 chr11 29222564 29222640 -121560913 + MIR SINE MIR 2 75 -187 866 313 133 17 chr11 29224300 29224988 -121558565 + L2 LINE L2 2551 3313 0 25 65 0 0 chr11 29225895 29225941 -121557612 + AT_rich Low_complexity Low_complexity 1 46 0 441 288 5 7 chr11 29226935 29227074 -121556479 - MIR SINE MIR -77 131 10 196 240 0 20 chr11 29227955 29228005 -121555548 - L2 LINE L2 -566 2748 2700 1232 190 132 29 chr11 29228473 29228784 -121554769 + MER2 DNA MER2_type 1 343 -1 336 193 12 0 chr11 29228906 29228989 -121554564 + L1PA16 LINE L1 6079 6162 -4 285 350 29 0 chr11 29231104 29231244 -121552309 + L1ME LINE L1 486 629 -5925 473 255 71 54 chr11 29231739 29232068 -121551485 + L1ME LINE L1 923 1457 -4968 10099 140 28 10 chr11 29232076 29234386 -121549167 - L1MA3 LINE L1 -1 6304 3939 22349 41 0 0 chr11 29234386 29237916 -121545637 - L1PA5 LINE L1 -4 6150 2619 10099 140 28 10 chr11 29237916 29238416 -121545137 - L1MA3 LINE L1 -2366 3939 3449 360 289 59 20 chr11 29238444 29238745 -121544808 + L1ME LINE L1 1341 1806 -4911 213 139 23 0 chr11 29239449 29239492 -121544061 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 1783 141 46 12 chr11 29240309 29240635 -121542918 + MER44D DNA MER2_type 2 608 -1 214 248 106 75 chr11 29240875 29241036 -121542517 + L2 LINE L2 3127 3292 -21 180 0 0 0 chr11 29241275 29241295 -121542258 + (T)n Simple_repeat Simple_repeat 1 20 0 362 201 77 66 chr11 29241859 29241991 -121541562 - MIR SINE MIR -62 146 37 24 32 0 0 chr11 29243844 29243875 -121539678 + AT_rich Low_complexity Low_complexity 1 31 0 2971 132 72 13 chr11 29244139 29244610 -121538943 - MER1A DNA MER1_type 0 529 31 237 214 89 0 chr11 29244962 29245018 -121538535 + MIR3 SINE MIR 143 203 -5 637 286 21 11 chr11 29245467 29245656 -121537897 - L1ME3A LINE L1 -36 6134 5944 901 79 58 0 chr11 29245684 29245823 -121537730 - L1MA5 LINE L1 -3 6297 6151 25 51 0 0 chr11 29245831 29245870 -121537683 + AT_rich Low_complexity Low_complexity 1 39 0 703 12 0 0 chr11 29245966 29246046 -121537507 + MADE1 DNA Mariner 1 80 0 314 147 64 0 chr11 29246085 29246242 -121537311 + (TA)n Simple_repeat Simple_repeat 2 168 0 301 234 0 16 chr11 29247113 29247237 -121536316 + (TA)n Simple_repeat Simple_repeat 1 122 0 263 237 0 26 chr11 29247262 29247338 -121536215 + (TA)n Simple_repeat Simple_repeat 1 74 0 208 260 156 10 chr11 29247594 29247690 -121535863 - MIR SINE MIR 0 262 153 803 241 34 34 chr11 29247833 29248069 -121535484 + MER46C DNA MER2_type 86 321 -17 249 261 14 43 chr11 29248123 29248192 -121535361 - MIR SINE MIR -149 113 47 2274 115 0 6 chr11 29248430 29248743 -121534810 + AluSx SINE Alu 1 311 -1 1603 135 52 8 chr11 29249277 29249544 -121534009 - Tigger5 DNA MER2_type 0 2323 2045 385 98 0 0 chr11 29249533 29249584 -121533969 + Tigger5 DNA MER2_type 143 193 -2130 * 403 189 0 14 chr11 29249588 29249662 -121533891 + Tigger5 DNA MER2_type 2251 2323 0 21 0 0 0 chr11 29249708 29249729 -121533824 + AT_rich Low_complexity Low_complexity 1 21 0 663 236 27 67 chr11 29251107 29251332 -121532221 + MLT1K LTR MaLR 322 537 -51 2315 199 178 7 chr11 29251344 29251912 -121531641 - L1MD2 LINE L1 -20 6339 5675 1953 176 9 0 chr11 29252639 29252985 -121530568 - L1PB4 LINE L1 0 6156 5808 258 146 34 45 chr11 29253060 29253149 -121530404 + (TA)n Simple_repeat Simple_repeat 2 89 0 232 327 18 55 chr11 29255731 29255841 -121527712 + L2 LINE L2 3149 3254 -18 1171 211 61 64 chr11 29256696 29257057 -121526496 - MER21B LTR ERV1 -19 844 485 2038 189 32 11 chr11 29257061 29257495 -121526058 - MER65A LTR ERV1 -2 443 1 2039 235 11 6 chr11 29257495 29257963 -121525590 - MER65A-int LTR ERV1 0 4871 4402 1758 269 66 0 chr11 29257967 29258394 -121525159 - MER65A-int LTR ERV1 -813 4058 3604 256 180 82 45 chr11 29258407 29258553 -121525000 - MER65A-int LTR ERV1 -939 5392 5192 180 186 0 0 chr11 29258701 29258760 -121524793 + C-rich Low_complexity Low_complexity 1 59 0 248 229 0 21 chr11 29258815 29258911 -121524642 + (CCA)n Simple_repeat Simple_repeat 3 96 0 * 276 201 13 65 chr11 29258850 29259004 -121524549 + (CACCC)n Simple_repeat Simple_repeat 3 148 0 1335 195 87 67 chr11 29259260 29261082 -121522471 - MER65A-int LTR ERV1 -353 4527 1546 25 51 0 0 chr11 29261104 29261143 -121522410 + AT_rich Low_complexity Low_complexity 1 39 0 2920 180 61 33 chr11 29261196 29262014 -121521539 - MER65A-int LTR ERV1 -2377 2494 1654 2054 109 85 21 chr11 29262025 29262356 -121521197 - THE1B LTR MaLR -12 352 1 11100 99 19 1 chr11 29262356 29263908 -121519645 - THE1B-int LTR MaLR 0 1580 1 2292 105 33 30 chr11 29263908 29264271 -121519282 - THE1B LTR MaLR 0 364 1 4092 202 61 47 chr11 29264271 29265407 -121518146 - MER65A-int LTR ERV1 -3237 1634 483 619 244 19 91 chr11 29265417 29265737 -121517816 - MER65A-int LTR ERV1 -4493 378 82 2469 154 7 29 chr11 29265821 29266275 -121517278 - MER65A LTR ERV1 -1 444 1 1094 282 25 64 chr11 29266321 29266757 -121516796 - MER21B LTR ERV1 -444 419 1 505 373 65 27 chr11 29266783 29267046 -121516507 - L3 LINE CR1 -11 1566 1294 1970 172 74 54 chr11 29267113 29267613 -121515940 + LTR54 LTR ERV1 1 510 0 266 265 88 20 chr11 29267676 29267778 -121515775 - MLT1L LTR MaLR 0 615 507 233 293 40 71 chr11 29267945 29268044 -121515509 + L2 LINE L2 3177 3272 0 22 70 0 0 chr11 29268273 29268316 -121515237 + AT_rich Low_complexity Low_complexity 1 43 0 274 252 233 39 chr11 29268412 29268515 -121515038 + MER5A DNA MER1_type 46 168 -21 1053 235 9 0 chr11 29268703 29268920 -121514633 - MER20 DNA MER1_type 0 219 1 14955 132 20 7 chr11 29269052 29271439 -121512114 - Tigger1 DNA MER2_type 0 2418 1 323 275 42 42 chr11 29271577 29271719 -121511834 - HAL1 LINE L1 -886 1621 1480 329 296 82 58 chr11 29272504 29272795 -121510758 - L1MEc LINE L1 -4189 2398 2101 1652 139 44 25 chr11 29273000 29273317 -121510236 - AluJb SINE Alu 0 328 7 302 293 178 44 chr11 29273328 29273553 -121510000 - HAL1 LINE L1 -887 1620 1366 248 284 95 0 chr11 29273558 29273653 -121509900 - L1MEc LINE L1 -4869 1435 1332 232 272 31 80 chr11 29273653 29273815 -121509738 - HsTC2 DNA Tc2 0 1898 1745 1294 214 59 70 chr11 29273864 29274322 -121509231 - MLT2C2 LTR ERVL -11 453 1 1100 214 24 20 chr11 29274331 29274681 -121508872 - HsTC2 DNA Tc2 -205 1693 1284 287 304 51 22 chr11 29274696 29274834 -121508719 - HsTC2 DNA Tc2 -1751 147 6 300 271 42 31 chr11 29274929 29275025 -121508528 - L1MEc LINE L1 -5147 1262 1166 1850 177 34 72 chr11 29275254 29275657 -121507896 - L1MA4 LINE L1 0 6300 5790 369 0 0 0 chr11 29275657 29275698 -121507855 + (TG)n Simple_repeat Simple_repeat 2 42 0 1850 177 34 72 chr11 29275698 29275768 -121507785 - L1MA4 LINE L1 -510 5790 5719 210 320 20 72 chr11 29275773 29275926 -121507627 + MIR SINE MIR 117 261 -1 315 0 0 0 chr11 29276651 29276686 -121506867 + (A)n Simple_repeat Simple_repeat 1 35 0 238 293 32 73 chr11 29277566 29277689 -121505864 - L2 LINE L2 0 3272 3155 690 268 18 6 chr11 29277862 29278030 -121505523 - MIR SINE MIR -25 237 68 622 276 89 56 chr11 29278039 29278434 -121505119 - MLT1K LTR MaLR -4 584 177 236 308 33 33 chr11 29278436 29278556 -121504997 + MIR SINE MIR 143 262 0 2199 154 3 0 chr11 29278574 29278919 -121504634 + MER7A DNA MER2_type 2 345 -1 730 309 132 6 chr11 29278948 29279281 -121504272 - L2 LINE L2 0 3313 2939 187 322 56 56 chr11 29280830 29280973 -121502580 + L2 LINE L2 3171 3313 0 396 377 36 0 chr11 29281474 29281641 -121501912 + MIR SINE MIR 20 192 -70 192 226 0 38 chr11 29282947 29283000 -121500553 - MIR SINE MIR -71 191 141 377 319 9 0 chr11 29283329 29283442 -121500111 + MIR3 SINE MIR 65 178 -30 247 276 0 5 chr11 29283766 29283841 -121499712 - MIR SINE MIR -81 127 54 476 276 92 6 chr11 29284079 29284242 -121499311 + Charlie8 DNA MER1_type 58 234 -2183 392 329 64 14 chr11 29284242 29284382 -121499171 - MER91A DNA MER1_type -14 182 36 296 229 14 0 chr11 29284571 29284641 -121498912 + Charlie8 DNA MER1_type 2347 2417 0 2131 194 22 29 chr11 29285122 29285300 -121498253 + MLT1C LTR MaLR 1 179 -288 2057 114 4 4 chr11 29285300 29285601 -121497952 + AluSx SINE Alu 1 301 0 2131 194 22 29 chr11 29285601 29285874 -121497679 + MLT1C LTR MaLR 179 450 -17 207 269 0 0 chr11 29286060 29286190 -121497363 + G-rich Low_complexity Low_complexity 1 130 0 196 296 0 0 chr11 29286821 29286865 -121496688 + MIR SINE MIR 89 132 -76 305 309 0 0 chr11 29287228 29287312 -121496241 + CT-rich Low_complexity Low_complexity 2 85 0 242 318 126 45 chr11 29288224 29288447 -121495106 - MIR SINE MIR -6 256 16 180 234 0 0 chr11 29288476 29288523 -121495030 + (CA)n Simple_repeat Simple_repeat 2 48 0 233 146 0 0 chr11 29288804 29288845 -121494708 + L1MD3 LINE L1 7240 7280 -715 572 224 16 0 chr11 29288846 29288971 -121494582 + MLT1F1 LTR MaLR 5 131 -436 1446 212 88 15 chr11 29288986 29289382 -121494171 + L1MD3 LINE L1 7435 7859 -136 550 160 76 8 chr11 29289506 29289637 -121493916 + L1MD3 LINE L1 7848 7987 -8 186 43 0 0 chr11 29289641 29289664 -121493889 + (T)n Simple_repeat Simple_repeat 1 23 0 201 365 65 0 chr11 29289691 29289798 -121493755 - L2 LINE L2 -286 2986 2873 1341 197 51 70 chr11 29290648 29291018 -121492535 - MLT1A1 LTR MaLR -2 363 1 930 255 129 54 chr11 29291205 29291223 -121492330 - L2 LINE L2 -1 3312 3297 2314 116 0 0 chr11 29291223 29291533 -121492020 + AluSq SINE Alu 1 310 -3 930 255 129 54 chr11 29291533 29292107 -121491446 - L2 LINE L2 -16 3297 2630 1003 154 6 0 chr11 29292820 29292982 -121490571 + Tigger5 DNA MER2_type 2161 2323 0 2340 170 43 30 chr11 29292995 29293386 -121490167 - L1MB7 LINE L1 -107 6077 5676 2197 123 0 0 chr11 29293386 29293686 -121489867 - AluSx SINE Alu -12 300 1 2340 170 43 30 chr11 29293686 29293800 -121489753 - L1MB7 LINE L1 -508 5676 5565 2348 142 32 48 chr11 29294031 29294182 -121489371 - Tigger2a DNA MER2_type -2274 434 282 2379 94 3 0 chr11 29294182 29294489 -121489064 - AluSp SINE Alu -1 312 5 2348 142 32 48 chr11 29294489 29294775 -121488778 - Tigger2a DNA MER2_type -2426 282 4 205 292 0 0 chr11 29294777 29294825 -121488728 + (TATATG)n Simple_repeat Simple_repeat 2 49 0 429 156 0 0 chr11 29294825 29294902 -121488651 + (CA)n Simple_repeat Simple_repeat 2 78 0 347 171 0 14 chr11 29294903 29294973 -121488580 + MLT2D LTR ERVL 298 366 -48 314 206 0 32 chr11 29295379 29295442 -121488111 + MIR SINE MIR 2 62 -200 697 236 0 35 chr11 29295699 29295873 -121487680 - FRAM SINE Alu -11 165 1 253 282 0 0 chr11 29296131 29296216 -121487337 + L1MC4 LINE L1 6619 6703 -1339 180 0 0 0 chr11 29296216 29296236 -121487317 + (TA)n Simple_repeat Simple_repeat 2 21 0 818 118 0 0 chr11 29296930 29297049 -121486504 - AluY SINE Alu -4 307 189 626 260 42 16 chr11 29297674 29297881 -121485672 + MIR SINE MIR 51 262 0 461 308 186 22 chr11 29297988 29298306 -121485247 + L2 LINE L2 2944 3313 0 1078 69 0 0 chr11 29298997 29299127 -121484426 - AluY SINE Alu -181 130 1 357 103 8 239 chr11 29299342 29299459 -121484094 + MER63 DNA MER1_type 1 716 -120 1456 150 28 0 chr11 29299758 29300012 -121483541 - L1MA3 LINE L1 0 6305 6045 339 279 98 0 chr11 29300060 29300182 -121483371 + L2 LINE L2 3168 3301 -12 399 41 0 0 chr11 29301199 29301248 -121482305 + (TG)n Simple_repeat Simple_repeat 2 50 0 237 180 0 0 chr11 29301430 29301480 -121482073 + (TA)n Simple_repeat Simple_repeat 1 50 0 595 259 48 120 chr11 29304998 29305372 -121478181 + L2 LINE L2 2958 3304 -9 548 357 43 62 chr11 29305535 29306003 -121477550 - L2 LINE L2 -2 3270 2812 229 323 0 15 chr11 29306025 29306090 -121477463 + L3b LINE CR1 1496 1559 -24 569 183 100 8 chr11 29306206 29306326 -121477227 - MLT1A1 LTR MaLR -11 354 224 24 32 0 0 chr11 29306626 29306657 -121476896 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr11 29307209 29307238 -121476315 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr11 29307855 29307879 -121475674 + AT_rich Low_complexity Low_complexity 1 24 0 2030 146 0 0 chr11 29308283 29308585 -121474968 - AluSx SINE Alu -10 302 1 1603 191 3 7 chr11 29308903 29309202 -121474351 + AluJb SINE Alu 1 298 -14 284 250 0 71 chr11 29309538 29309622 -121473931 + MER20B DNA MER1_type 467 544 -239 * 890 265 111 29 chr11 29309605 29309948 -121473605 - MER20B DNA MER1_type -328 455 85 180 0 0 0 chr11 29310377 29310397 -121473156 + (T)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr11 29311245 29311269 -121472284 + AT_rich Low_complexity Low_complexity 1 24 0 1839 254 105 10 chr11 29312311 29312806 -121470747 + MLT1F LTR MaLR 1 542 0 1619 159 68 17 chr11 29312987 29313408 -121470145 - MER61D LTR ERV1 0 501 1 12768 168 28 41 chr11 29313411 29315058 -121468495 - HUERS-P3b LTR ERV1 -2 6994 5326 2282 109 37 3 chr11 29315058 29315408 -121468145 + THE1B LTR MaLR 3 364 0 12768 168 28 41 chr11 29315408 29318532 -121465021 - HUERS-P3b LTR ERV1 -1670 5326 615 1260 179 51 72 chr11 29318535 29318845 -121464708 - HUERS-P2 LTR ERV1 -4783 434 289 881 243 52 29 chr11 29318862 29319206 -121464347 - HUERS-P2 LTR ERV1 -2530 601 268 1049 169 143 19 chr11 29319342 29319642 -121463911 - MER61D LTR ERV1 -116 385 1 838 206 75 110 chr11 29319650 29320077 -121463476 - LTR8A LTR ERV1 -7 720 309 1364 167 4 25 chr11 29320108 29320392 -121463161 + AluJb SINE Alu 49 327 0 890 210 66 121 chr11 29320422 29320727 -121462826 - LTR8 LTR ERV1 -434 257 1 591 296 52 83 chr11 29320752 29320766 -121462787 - L2 LINE L2 -407 2907 2894 2202 169 47 45 chr11 29320766 29321274 -121462279 - LTR54 LTR ERV1 0 510 2 591 296 52 83 chr11 29321274 29321719 -121461834 - L2 LINE L2 -420 2894 2462 246 239 195 9 chr11 29321776 29321889 -121461664 - L2 LINE L2 -945 2369 2236 181 283 0 0 chr11 29322389 29322435 -121461118 - L2 LINE L2 -1081 2233 2188 296 370 75 72 chr11 29322530 29322822 -121460731 + L2 LINE L2 2976 3268 -4 32 0 0 0 chr11 29324017 29324049 -121459504 + AT_rich Low_complexity Low_complexity 1 32 0 33 0 0 0 chr11 29324328 29324361 -121459192 + AT_rich Low_complexity Low_complexity 1 33 0 216 266 38 13 chr11 29325591 29325670 -121457883 + L3b LINE CR1 1251 1331 -252 203 360 35 0 chr11 29325772 29325858 -121457695 - MIR SINE MIR -23 239 151 577 226 32 8 chr11 29326092 29326216 -121457337 + MER104 DNA Tc2 51 177 -3 468 240 96 0 chr11 29326346 29326492 -121457061 - MER103 DNA DNA 0 166 7 203 254 70 28 chr11 29327884 29327955 -121455598 + MIR SINE MIR 157 230 -32 224 300 57 23 chr11 29329298 29329392 -121454161 - MIR SINE MIR -65 143 62 661 202 9 0 chr11 29329779 29329888 -121453665 + MER2 DNA MER2_type 1 110 -235 3531 110 112 0 chr11 29329888 29330459 -121453094 - MER41B LTR ERV1 0 635 1 547 222 116 44 chr11 29330459 29330681 -121452872 + MER2 DNA MER2_type 107 344 -1 665 257 6 40 chr11 29331348 29331523 -121452030 + MIR SINE MIR 7 175 -87 318 293 81 8 chr11 29331547 29331670 -121451883 + MIR3 SINE MIR 54 185 -23 392 365 28 6 chr11 29331788 29331966 -121451587 + MIR SINE MIR 66 247 -15 371 245 147 31 chr11 29332872 29333035 -121450518 + MIR SINE MIR 81 262 0 526 32 0 0 chr11 29334244 29334307 -121449246 + MLT2A1 LTR ERVL 1 63 -381 21510 70 4 4 chr11 29334308 29337069 -121446484 + HERVL-A1 LTR ERVL 2893 5654 0 2345 134 36 41 chr11 29337074 29337515 -121446038 + MLT2A1 LTR ERVL 6 444 0 307 169 14 28 chr11 29338067 29338138 -121445415 - MER20B DNA MER1_type 0 783 714 239 272 25 12 chr11 29338352 29338433 -121445120 - L2 LINE L2 -86 3227 3146 39 68 0 0 chr11 29338618 29338692 -121444861 + AT_rich Low_complexity Low_complexity 1 74 0 739 266 116 10 chr11 29338879 29339086 -121444467 + MIR SINE MIR 13 241 -21 450 315 50 35 chr11 29339204 29339404 -121444149 + MIR SINE MIR 60 262 0 197 200 0 22 chr11 29340201 29340246 -121443307 + MIR3 SINE MIR 111 154 -54 328 281 49 20 chr11 29340923 29341070 -121442483 - L1ME LINE L1 -456 5665 5506 363 270 36 7 chr11 29341816 29341953 -121441600 - L1ME2 LINE L1 0 6164 6024 1560 261 87 10 chr11 29341994 29342512 -121441041 - L1ME2 LINE L1 -215 5947 5390 24 0 0 0 chr11 29343740 29343764 -121439789 + AT_rich Low_complexity Low_complexity 1 24 0 16706 86 2 1 chr11 29343764 29347097 -121436456 - L1PA7 LINE L1 -2 6152 2819 21 36 0 0 chr11 29347798 29347826 -121435727 + AT_rich Low_complexity Low_complexity 1 28 0 228 267 128 12 chr11 29347830 29347916 -121435637 + MIR SINE MIR 41 136 -126 366 335 25 19 chr11 29348249 29348410 -121435143 - L2 LINE L2 0 3313 3152 24 32 0 0 chr11 29348420 29348451 -121435102 + AT_rich Low_complexity Low_complexity 1 31 0 269 213 75 32 chr11 29348483 29348577 -121434976 - L2 LINE L2 -949 2365 2268 402 284 209 9 chr11 29348624 29348835 -121434718 - L2 LINE L2 -1296 2018 1766 23 68 0 0 chr11 29349191 29349235 -121434318 + AT_rich Low_complexity Low_complexity 1 44 0 31 44 0 0 chr11 29349633 29349678 -121433875 + AT_rich Low_complexity Low_complexity 1 45 0 225 265 143 10 chr11 29349929 29350027 -121433526 + MIR SINE MIR 145 255 -7 34 65 0 0 chr11 29350353 29350415 -121433138 + AT_rich Low_complexity Low_complexity 1 62 0 21 0 0 0 chr11 29351029 29351050 -121432503 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 29352781 29352803 -121430750 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr11 29353683 29353732 -121429821 + AT_rich Low_complexity Low_complexity 1 49 0 274 146 0 0 chr11 29353744 29353792 -121429761 - L1M4 LINE L1 -2449 3697 3650 26 0 0 0 chr11 29354412 29354438 -121429115 + AT_rich Low_complexity Low_complexity 1 26 0 1270 242 28 25 chr11 29354835 29355231 -121428322 - L1M4 LINE L1 -2296 3850 3454 610 220 8 8 chr11 29355231 29355349 -121428204 + MER20 DNA MER1_type 100 217 -2 391 288 23 11 chr11 29355349 29355526 -121428027 - L1M4 LINE L1 -2690 3456 3278 2426 123 80 5 chr11 29355710 29356108 -121427445 - MSTA LTR MaLR 0 428 1 569 110 11 0 chr11 29356627 29356718 -121426835 + (TTTC)n Simple_repeat Simple_repeat 3 94 0 2037 125 0 4 chr11 29356723 29357004 -121426549 - AluSq SINE Alu -33 280 1 29 28 0 0 chr11 29357140 29357176 -121426377 + AT_rich Low_complexity Low_complexity 1 36 0 5425 177 19 15 chr11 29357207 29359169 -121424384 - L1PB3 LINE L1 -5 6149 4184 25 20 0 59 chr11 29359877 29359928 -121423625 + AT_rich Low_complexity Low_complexity 1 48 0 379 121 17 0 chr11 29360014 29360072 -121423481 - MIR SINE MIR -113 149 91 21 0 0 0 chr11 29360342 29360363 -121423190 + AT_rich Low_complexity Low_complexity 1 21 0 357 257 37 59 chr11 29362173 29362250 -121421303 + MIR SINE MIR 117 191 -71 2087 72 0 4 chr11 29362250 29362513 -121421040 - AluSq SINE Alu -16 297 36 357 257 37 59 chr11 29362513 29362571 -121420982 + MIR SINE MIR 191 249 -13 459 261 57 40 chr11 29362674 29362850 -121420703 + MIR SINE MIR 8 186 -76 209 261 62 0 chr11 29362895 29362960 -121420593 + MIR SINE MIR 183 251 -11 6999 102 38 12 chr11 29363143 29364224 -121419329 - L1P LINE L1 -1722 4424 3316 272 333 12 12 chr11 29364225 29364309 -121419244 + L2 LINE L2 3203 3286 -27 347 325 138 42 chr11 29364446 29364831 -121418722 - L2 LINE L2 -458 2856 2435 203 338 0 14 chr11 29365646 29365720 -121417833 + MIR3 SINE MIR 135 207 -1 347 252 179 0 chr11 29366082 29366205 -121417348 + MIR3 SINE MIR 46 190 -18 235 270 11 34 chr11 29366507 29366596 -121416957 + MARNA DNA Mariner 30 116 -470 275 333 18 35 chr11 29366826 29366940 -121416613 + MIR SINE MIR 18 129 -79 225 0 0 0 chr11 29366941 29366966 -121416587 + (T)n Simple_repeat Simple_repeat 1 25 0 204 359 0 39 chr11 29367110 29367188 -121416365 + MIR SINE MIR 20 94 -168 326 294 35 63 chr11 29367251 29367394 -121416159 - MIR SINE MIR -76 186 48 27 0 0 0 chr11 29367586 29367613 -121415940 + AT_rich Low_complexity Low_complexity 1 27 0 1617 36 5 0 chr11 29367613 29367808 -121415745 - L1PA3 LINE L1 -2 6153 5958 3602 123 30 14 chr11 29418978 29419569 -121363984 + LTR36 LTR ERV1 11 611 0 286 244 35 78 chr11 29419570 29419685 -121363868 + MIR SINE MIR 153 262 0 195 100 0 0 chr11 29419699 29419729 -121363824 + (TG)n Simple_repeat Simple_repeat 2 31 0 1124 157 113 8 chr11 29419760 29419928 -121363625 - MLT1A1 LTR MaLR -15 350 146 425 19 19 0 chr11 29419928 29419982 -121363571 + (GA)n Simple_repeat Simple_repeat 2 56 0 1124 157 113 8 chr11 29419982 29420061 -121363492 - MLT1A1 LTR MaLR -219 146 77 22 0 0 0 chr11 29420448 29420470 -121363083 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr11 29421008 29421036 -121362517 + (TG)n Simple_repeat Simple_repeat 1 28 0 1444 214 7 14 chr11 29421036 29421317 -121362236 - AluJb SINE Alu -33 279 1 4120 32 8 0 chr11 29422016 29422513 -121361040 - L1PA3 LINE L1 0 6155 5655 290 239 30 0 chr11 29422615 29422650 -121360903 + MIR3 SINE MIR 127 159 -49 1041 219 5 22 chr11 29422650 29422874 -121360679 - MER58A DNA MER1_type -2 222 3 290 239 30 0 chr11 29422874 29422905 -121360648 + MIR3 SINE MIR 159 195 -13 449 204 48 0 chr11 29423641 29423744 -121359809 - MER20 DNA MER1_type 0 219 112 3693 24 2 17 chr11 29423884 29424299 -121359254 + SVA Other Other 978 1386 0 2383 145 29 19 chr11 29425668 29426088 -121357465 + MSTB LTR MaLR 1 424 -2 1144 175 83 74 chr11 29426097 29426536 -121357017 + MST-int LTR MaLR 15 463 -908 255 152 0 0 chr11 29427350 29427396 -121356157 + (TG)n Simple_repeat Simple_repeat 1 46 0 695 164 59 0 chr11 29427452 29427604 -121355949 - L1MB2 LINE L1 -15 6156 5996 182 336 92 23 chr11 29427615 29427746 -121355807 - MIR SINE MIR -60 202 63 2593 52 3 0 chr11 29428856 29429166 -121354387 + AluY SINE Alu 1 311 0 4183 67 2 6 chr11 29429459 29429999 -121353554 + L1PA7 LINE L1 5604 6141 -13 735 302 88 0 chr11 29430028 29430313 -121353240 + L2 LINE L2 3004 3313 0 21 0 0 0 chr11 29430937 29430958 -121352595 + AT_rich Low_complexity Low_complexity 1 21 0 1720 107 0 4 chr11 29431398 29431623 -121351930 - AluY SINE Alu -49 262 39 4400 215 33 64 chr11 29431623 29432177 -121351376 - L1M2 LINE L1 -3957 2372 1802 1430 200 25 51 chr11 29432177 29432492 -121351061 - AluJo SINE Alu -5 307 1 4400 215 33 64 chr11 29432492 29433705 -121349848 - L1M2 LINE L1 -4527 1802 351 2214 203 20 34 chr11 29433824 29434237 -121349316 - L1 LINE L1 -2970 3176 2773 2515 62 0 0 chr11 29434237 29434542 -121349011 - AluY SINE Alu -6 305 1 2214 203 20 34 chr11 29434542 29434739 -121348814 - L1 LINE L1 -3373 2773 2575 206 156 0 22 chr11 29436686 29436731 -121346822 + L2 LINE L2 3270 3313 0 988 139 30 0 chr11 29436907 29437073 -121346480 + L1PA13 LINE L1 5989 6159 -4 5199 125 8 1 chr11 29437083 29437925 -121345628 + L1PA15 LINE L1 5318 6165 0 506 173 9 27 chr11 29437925 29438035 -121345518 + L1M3f LINE L1 90 197 -5131 280 222 25 25 chr11 29439025 29439106 -121344447 - MIR SINE MIR 0 262 182 1868 163 34 0 chr11 29439126 29439451 -121344102 + MER7A DNA MER2_type 1 334 -12 4434 202 28 8 chr11 29439552 29440731 -121342822 - L1 LINE L1 -2763 3383 2182 707 88 0 0 chr11 29440732 29440823 -121342730 - AluY SINE Alu -13 298 208 346 233 12 0 chr11 29441220 29441306 -121342247 + MLT1I LTR MaLR 323 409 0 234 316 84 39 chr11 29441883 29442038 -121341515 + L2 LINE L2 2383 2544 -770 257 135 135 0 chr11 29442198 29442250 -121341303 + LTR18B LTR ERVL 530 588 -26 496 235 0 0 chr11 29443274 29443376 -121340177 + L2 LINE L2 2501 2602 -712 628 283 161 18 chr11 29443445 29443774 -121339779 + L2 LINE L2 2890 3265 -48 2348 67 29 0 chr11 29443995 29444339 -121339214 - L1P LINE L1 -2452 3694 3341 238 290 0 0 chr11 29444471 29444533 -121339020 + L2 LINE L2 3204 3265 -7 2477 76 3 10 chr11 29446934 29447248 -121336305 + AluSx SINE Alu 1 312 0 261 296 26 78 chr11 29447259 29447374 -121336179 + MER5A DNA MER1_type 12 120 -69 480 187 88 0 chr11 29447899 29447990 -121335563 - L2 LINE L2 -5 3308 3210 228 111 0 0 chr11 29448008 29448044 -121335509 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 225 0 0 0 chr11 29448660 29448685 -121334868 + (A)n Simple_repeat Simple_repeat 1 25 0 475 285 96 22 chr11 29450293 29450563 -121332990 + HERVL LTR ERVL 2244 2533 -3231 481 287 8 8 chr11 29451232 29451354 -121332199 + L2 LINE L2 3187 3308 -5 269 201 176 31 chr11 29452554 29452713 -121330840 + L1ME4a LINE L1 5939 6120 -1 6373 21 9 3 chr11 29453370 29454115 -121329438 - L1PA3 LINE L1 0 6155 5406 28 29 0 0 chr11 29454400 29454435 -121329118 + AT_rich Low_complexity Low_complexity 1 35 0 282 324 71 40 chr11 29454486 29454711 -121328842 + LTR16A LTR ERVL 210 441 -9 304 371 46 19 chr11 29454751 29455010 -121328543 - L2 LINE L2 -1 3312 3047 3804 164 22 47 chr11 29455031 29455861 -121327692 - L1PA16 LINE L1 -1 6165 5357 2122 126 3 3 chr11 29455869 29456171 -121327382 - AluSg SINE Alu 0 310 9 1629 98 4 0 chr11 29456310 29456555 -121326998 - L1PA16 LINE L1 -1412 4734 4489 * 2422 64 19 2 chr11 29456554 29457052 -121326501 + L1P3 LINE L1 5027 5530 -624 9187 57 6 1 chr11 29457120 29459050 -121324503 - L1PA5 LINE L1 0 6154 4200 337 339 55 27 chr11 29459186 29459478 -121324075 + HERVL LTR ERVL 4741 5040 -614 2483 78 0 0 chr11 29459805 29460113 -121323440 - AluY SINE Alu -3 308 1 341 256 25 16 chr11 29460235 29460356 -121323197 + LTR67 LTR ERVL 436 557 0 469 310 101 10 chr11 29460358 29460576 -121322977 + MIR SINE MIR 10 249 -13 296 294 63 16 chr11 29460879 29461005 -121322548 - MIR SINE MIR -7 255 124 331 294 127 0 chr11 29461011 29461137 -121322416 + L2 LINE L2 3171 3312 -1 811 246 132 60 chr11 29461376 29461855 -121321698 - MLT1H1 LTR MaLR -34 521 9 8866 109 14 2 chr11 29462522 29463854 -121319699 - THE1B-int LTR MaLR -231 1349 2 2167 127 19 32 chr11 29463855 29464224 -121319329 - THE1B LTR MaLR 0 364 1 30 52 0 39 chr11 29466767 29466844 -121316709 + AT_rich Low_complexity Low_complexity 1 74 0 912 199 140 8 chr11 29467230 29467466 -121316087 - MLT1C LTR MaLR -1 466 200 433 258 7 161 chr11 29468068 29468308 -121315245 + MIR SINE MIR 1 184 -78 1919 193 58 17 chr11 29468308 29468723 -121314830 + MSTB1 LTR MaLR 1 432 0 433 258 7 161 chr11 29468723 29468792 -121314761 + MIR SINE MIR 184 262 0 4128 216 142 20 chr11 29469366 29470433 -121313120 + Tigger3b DNA MER2_type 1 1197 -34 242 257 80 62 chr11 29471321 29471434 -121312119 + L1ME LINE L1 52 166 -5953 467 271 32 64 chr11 29471912 29472255 -121311298 + L1ME LINE L1 904 1235 -4884 621 261 78 41 chr11 29472401 29472746 -121310807 + HAL1b LINE L1 608 965 -383 337 205 13 0 chr11 29473009 29473087 -121310466 + L1 LINE L1 3606 3684 -2462 31750 42 34 2 chr11 29473087 29477269 -121306284 + L1P LINE L1 1 4317 -1829 515 68 0 0 chr11 29477369 29477443 -121306110 + L1PA2 LINE L1 6078 6151 -4 4734 134 17 1 chr11 29478400 29479178 -121304375 + L1PA16 LINE L1 5375 6164 -2 280 288 83 45 chr11 29479315 29479447 -121304106 - L2 LINE L2 -5 3308 3172 1177 200 17 30 chr11 29479687 29480043 -121303510 - MLT1E3 LTR MaLR 0 624 215 512 355 105 4 chr11 29480445 29480673 -121302880 - MIR SINE MIR -11 251 1 412 318 43 27 chr11 29480755 29480958 -121302595 - MIR SINE MIR -34 174 17 691 286 47 82 chr11 29481713 29482118 -121301435 - L2 LINE L2 -2 3311 2921 249 281 35 0 chr11 29482329 29482386 -121301167 - L2 LINE L2 -2 3270 3212 1906 161 35 35 chr11 29482388 29482944 -121300609 - MLT2A2 LTR ERVL 0 554 1 407 326 20 0 chr11 29483001 29483148 -121300405 - MER117 DNA MER1_type -1 196 47 462 252 187 48 chr11 29483170 29483400 -121300153 + MLT1H LTR MaLR 286 547 -2 544 252 75 37 chr11 29484787 29485001 -121298552 + MLT1H LTR MaLR 215 436 -113 2466 115 11 19 chr11 29485333 29485707 -121297846 - THE1C LTR MaLR -4 371 1 672 321 4 53 chr11 29486103 29486368 -121297185 - MIR SINE MIR -8 254 3 181 217 145 58 chr11 29486388 29486457 -121297096 + L2 LINE L2 3239 3313 0 197 33 33 0 chr11 29486539 29486569 -121296984 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 285 258 40 48 chr11 29486958 29487082 -121296471 - MIR SINE MIR -13 249 127 1684 137 33 22 chr11 29487356 29487627 -121295926 + AluSx SINE Alu 30 303 -9 192 224 41 20 chr11 29488245 29488294 -121295259 + L3 LINE CR1 1524 1573 -4 209 278 143 16 chr11 29488902 29489028 -121294525 + MIR3 SINE MIR 31 172 -36 303 242 56 0 chr11 29490548 29490709 -121292844 + (TA)n Simple_repeat Simple_repeat 2 171 0 237 360 147 0 chr11 29491776 29491912 -121291641 - L2 LINE L2 0 3272 3117 868 241 44 31 chr11 29494072 29494300 -121289253 - MIR SINE MIR 0 262 32 1016 167 18 27 chr11 29494306 29494528 -121289025 + L1MA9 LINE L1 6076 6295 -17 348 356 12 19 chr11 29495514 29495674 -121287879 - MIR3 SINE MIR -9 199 41 227 305 148 45 chr11 29495919 29496142 -121287411 + L2 LINE L2 3046 3291 -22 977 120 115 33 chr11 29497866 29498049 -121285504 + MER20 DNA MER1_type 1 198 -21 785 334 89 5 chr11 29498171 29498608 -121284945 - L2 LINE L2 -862 2452 1979 239 266 89 35 chr11 29499010 29499179 -121284374 - L1ME LINE L1 -338 5783 5606 207 0 0 0 chr11 29499268 29499291 -121284262 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5893 111 18 0 chr11 29499309 29500500 -121283053 - L1PA10 LINE L1 -14 6154 4950 6849 120 31 39 chr11 29500500 29501053 -121282500 + L1P LINE L1 3711 4267 -1879 539 56 0 0 chr11 29501053 29501124 -121282429 - L1PA5 LINE L1 -2 6152 6082 6849 120 31 39 chr11 29501124 29501752 -121281801 + L1P LINE L1 4267 4883 -1263 381 248 19 9 chr11 29502001 29502106 -121281447 + MER103 DNA DNA 59 164 -2 200 341 65 49 chr11 29502438 29502561 -121280992 + MIR SINE MIR 20 144 -64 * 207 233 0 0 chr11 29502537 29502580 -121280973 + L2 LINE L2 3228 3270 -2 2083 171 0 9 chr11 29502966 29503316 -121280237 + MLT1A1 LTR MaLR 1 347 -18 352 320 78 0 chr11 29504229 29504357 -121279196 - MIR SINE MIR -80 182 45 571 197 0 66 chr11 29504373 29504510 -121279043 + MER21B LTR ERV1 678 805 -58 234 312 78 0 chr11 29504537 29504614 -121278939 - L2 LINE L2 -242 3030 2948 1710 147 17 10 chr11 29504633 29504926 -121278627 + L1PB4 LINE L1 5848 6142 -14 36 40 0 0 chr11 29504944 29504994 -121278559 + AT_rich Low_complexity Low_complexity 1 50 0 185 211 0 0 chr11 29506867 29506905 -121276648 + L2 LINE L2 3272 3309 -4 22 56 0 0 chr11 29507285 29507321 -121276232 + AT_rich Low_complexity Low_complexity 1 36 0 1557 100 0 0 chr11 29507723 29507943 -121275610 - L1P LINE L1 -1103 5043 4824 4397 179 8 4 chr11 29508083 29509012 -121274541 - L1P4 LINE L1 -702 5466 4534 497 159 18 106 chr11 29509013 29509126 -121274427 - L1M3f LINE L1 -5225 103 1 8634 221 52 21 chr11 29509244 29511932 -121271621 + L1MB2 LINE L1 2092 4852 -1530 4486 47 0 0 chr11 29511932 29512487 -121271066 - L1PA4 LINE L1 0 6155 5601 * 7521 29 6 56 chr11 29512483 29514092 -121269461 - L1PA3 LINE L1 -1 6154 4589 11631 36 1 0 chr11 29514193 29515605 -121267948 - L1PA4 LINE L1 -843 5303 3891 5758 43 3 0 chr11 29515604 29516326 -121267227 + L1P LINE L1 4667 5390 -756 * 2909 181 77 25 chr11 29516326 29517471 -121266082 + L1MB2 LINE L1 4843 6065 -342 1996 237 68 18 chr11 29517471 29517969 -121265584 - MLT1F LTR MaLR -18 524 2 219 114 0 0 chr11 29518082 29518117 -121265436 + (TG)n Simple_repeat Simple_repeat 2 36 0 1249 148 0 6 chr11 29518513 29518695 -121264858 + AluJb SINE Alu 109 289 -23 909 260 74 7 chr11 29518706 29519002 -121264551 + L1MC4 LINE L1 7539 7854 -188 510 239 24 0 chr11 29519010 29519152 -121264401 + L1MC4 LINE L1 7908 8042 0 523 323 32 0 chr11 29519635 29519793 -121263760 - MIR SINE MIR -48 214 52 760 281 80 21 chr11 29520044 29520417 -121263136 + L1ME2 LINE L1 5531 5925 -196 1792 300 60 16 chr11 29520423 29521156 -121262397 - L2 LINE L2 -602 2712 1948 729 246 31 0 chr11 29521209 29521400 -121262153 + L1ME2 LINE L1 5959 6155 -9 228 203 14 0 chr11 29521419 29521488 -121262065 + L1ME4a LINE L1 6051 6120 -1 22 35 0 0 chr11 29523011 29523040 -121260513 + AT_rich Low_complexity Low_complexity 1 29 0 949 121 54 13 chr11 29523049 29523198 -121260355 + AluSg/x SINE Alu 69 223 -87 648 174 9 9 chr11 29523367 29523482 -121260071 - MER33 DNA MER1_type -208 116 2 215 283 0 0 chr11 29523598 29523651 -121259902 + (TG)n Simple_repeat Simple_repeat 1 53 0 348 319 0 25 chr11 29523654 29523773 -121259780 - MIR SINE MIR -11 251 136 450 146 0 0 chr11 29524058 29524140 -121259413 + (TG)n Simple_repeat Simple_repeat 1 82 0 246 128 0 26 chr11 29524157 29524196 -121259357 + LTR67 LTR ERVL 520 557 0 181 67 0 33 chr11 29524573 29524603 -121258950 + L2 LINE L2 3284 3312 -1 413 228 9 0 chr11 29524730 29524845 -121258708 + L1MA4A LINE L1 6042 6278 0 224 313 227 49 chr11 29525840 29526003 -121257550 + L2 LINE L2 3077 3268 -4 205 250 45 0 chr11 29526367 29526411 -121257142 - L2 LINE L2 -86 3186 3141 44 56 0 0 chr11 29526434 29526506 -121257047 + AT_rich Low_complexity Low_complexity 1 72 0 279 382 47 12 chr11 29527172 29527342 -121256211 + MIR SINE MIR 59 234 -28 229 290 0 43 chr11 29528068 29528161 -121255392 + MIR SINE MIR 13 101 -161 21 0 0 0 chr11 29528213 29528234 -121255319 + AT_rich Low_complexity Low_complexity 1 21 0 251 330 125 0 chr11 29529641 29529729 -121253824 - L2 LINE L2 -18 3254 3156 777 298 86 58 chr11 29529910 29531073 -121252480 - L1MC/D LINE L1 -747 5399 4441 282 319 135 38 chr11 29531208 29531393 -121252160 + MIR SINE MIR 48 250 -12 1545 167 14 22 chr11 29532009 29532285 -121251268 - AluJo SINE Alu -33 279 6 180 0 0 0 chr11 29532362 29532382 -121251171 + (A)n Simple_repeat Simple_repeat 1 20 0 219 284 108 54 chr11 29532458 29532532 -121251021 - L2 LINE L2 -47 3225 3148 401 225 148 0 chr11 29532680 29532822 -121250731 - MER103 DNA DNA -3 163 1 223 274 89 59 chr11 29532898 29533033 -121250520 - MIR SINE MIR -54 208 70 224 310 35 23 chr11 29534059 29534146 -121249407 + L2 LINE L2 2915 3002 -270 29 28 0 0 chr11 29534178 29534214 -121249339 + AT_rich Low_complexity Low_complexity 1 36 0 1193 151 9 41 chr11 29535575 29535794 -121247759 - THE1B LTR MaLR 0 364 153 1652 143 66 3 chr11 29535899 29536185 -121247368 - AluSx SINE Alu -5 307 4 815 138 75 13 chr11 29536195 29536354 -121247199 - MLT1C LTR MaLR -293 174 6 24 32 0 0 chr11 29537497 29537528 -121246025 + AT_rich Low_complexity Low_complexity 1 31 0 821 294 68 14 chr11 29538679 29539190 -121244363 + L1MEc LINE L1 1243 1781 -4615 3411 188 29 28 chr11 29539202 29540017 -121243536 + L1M4 LINE L1 4459 5274 -872 729 118 7 138 chr11 29541919 29542071 -121241482 + AluJb SINE Alu 2 133 -179 261 0 0 0 chr11 29542074 29542103 -121241450 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1088 130 0 7 chr11 29542114 29542268 -121241285 + AluJb SINE Alu 134 286 -26 22 0 0 0 chr11 29542268 29542290 -121241263 + AT_rich Low_complexity Low_complexity 1 22 0 237 333 0 30 chr11 29542578 29542677 -121240876 - L2 LINE L2 -23 3249 3154 367 359 72 18 chr11 29542955 29543079 -121240474 + L2 LINE L2 3097 3234 -38 521 275 41 18 chr11 29543079 29543250 -121240303 + MER5B DNA MER1_type 3 177 -1 367 359 72 18 chr11 29543250 29543292 -121240261 + L2 LINE L2 3234 3272 0 7974 128 42 19 chr11 29543656 29545716 -121237837 + L1PA11 LINE L1 4068 6172 -2 223 376 86 0 chr11 29545716 29545809 -121237744 - MIR SINE MIR -160 102 2 360 349 53 68 chr11 29545828 29546452 -121237101 - L2 LINE L2 -5 3267 2638 13659 172 19 10 chr11 29547656 29551479 -121232074 - L1MA3 LINE L1 -5 7719 3864 6342 132 20 83 chr11 29551479 29553269 -121230284 - L1MA3 LINE L1 -4927 2638 17 386 315 82 0 chr11 29554591 29554737 -121228816 - MER117 DNA MER1_type 0 197 40 295 259 0 0 chr11 29555205 29555259 -121228294 + Zaphod DNA AcHobo 7 60 -3971 2020 296 41 16 chr11 29555284 29555866 -121227687 + MER115 DNA AcHobo 97 693 0 346 317 16 0 chr11 29555866 29555988 -121227565 + LTR67 LTR ERVL 434 557 0 409 254 106 42 chr11 29556148 29556290 -121227263 + MIR3 SINE MIR 13 163 -45 878 296 90 23 chr11 29557349 29557781 -121225772 + LTR33A LTR ERVL 61 521 -2 7636 196 45 18 chr11 29558898 29560785 -121222768 - L1 LINE L1 -1146 5000 3062 6969 56 14 0 chr11 29560892 29561835 -121221718 + L1PA7 LINE L1 5195 6152 -2 266 261 84 25 chr11 29562061 29562180 -121221373 + MIR SINE MIR 110 235 -27 1800 182 3 0 chr11 29562765 29563073 -121220480 - AluJb SINE Alu -3 309 1 185 283 43 0 chr11 29563176 29563222 -121220331 + MIR3 SINE MIR 140 187 -21 194 306 202 40 chr11 29564259 29564383 -121219170 - L2 LINE L2 0 3272 3129 1017 165 93 43 chr11 29565308 29565587 -121217966 - MER33 DNA MER1_type -1 323 31 2088 112 0 3 chr11 29565715 29566000 -121217553 - AluSx SINE Alu -28 284 1 743 285 117 33 chr11 29567637 29568065 -121215488 + LTR16B LTR ERVL 1 464 0 312 304 54 34 chr11 29568252 29568400 -121215153 + L2 LINE L2 2933 3083 -189 3068 228 123 19 chr11 29568409 29568879 -121214674 - L1MC4 LINE L1 -469 7573 7153 1708 174 10 17 chr11 29568879 29569172 -121214381 - AluJo SINE Alu -13 299 9 3068 228 123 19 chr11 29569172 29569191 -121214362 - L1MC4 LINE L1 -889 7153 7137 498 17 0 0 chr11 29569191 29569250 -121214303 + (TATG)n Simple_repeat Simple_repeat 2 60 0 3068 228 123 19 chr11 29569250 29569768 -121213785 - L1MC4 LINE L1 -905 7137 6460 408 229 83 19 chr11 29569979 29570136 -121213417 - MER113 DNA MER1_type? -169 352 186 489 201 223 7 chr11 29570183 29570322 -121213231 - L1ME2 LINE L1 -37 6127 5959 302 287 54 39 chr11 29571275 29571404 -121212149 + L2 LINE L2 3138 3268 -4 248 275 194 31 chr11 29572176 29572336 -121211217 - L2 LINE L2 -825 2489 2304 2625 10 3 0 chr11 29572609 29572901 -121210652 + AluYb8 SINE Alu 1 293 -25 8050 205 12 5 chr11 29573001 29574730 -121208823 - L1 LINE L1 -1152 4994 3254 701 306 60 81 chr11 29574798 29574925 -121208628 + L3 LINE CR1 846 974 -603 2067 95 11 14 chr11 29574925 29575237 -121208316 + AluY SINE Alu 1 311 0 701 306 60 81 chr11 29575237 29575722 -121207831 + L3 LINE CR1 974 1446 -131 587 328 35 68 chr11 29575955 29576352 -121207201 + L1M4c LINE L1 423 806 -5497 348 190 0 0 chr11 29576526 29576584 -121206969 + L1M4c LINE L1 1088 1145 -5168 6968 64 1 6 chr11 29576584 29578325 -121205228 + L1PA7 LINE L1 4426 6153 -1 2598 213 56 18 chr11 29578346 29579082 -121204471 + L1M4c LINE L1 1109 1872 -4512 4814 237 46 7 chr11 29579088 29581614 -121201939 - L1MA4 LINE L1 0 6300 3670 4975 80 0 4 chr11 29581778 29582465 -121201088 - L1PA3 LINE L1 -2 6153 5470 1777 182 102 45 chr11 29683112 29683333 -121100220 + MLT2B2 LTR ERVL 1 208 -307 240 35 0 0 chr11 29683333 29683362 -121100191 + (TC)n Simple_repeat Simple_repeat 2 30 0 1777 182 102 45 chr11 29683362 29683580 -121099973 + MLT2B2 LTR ERVL 208 465 -50 13237 146 33 9 chr11 29683596 29685199 -121098354 - Tigger2 DNA MER2_type -2 2716 1037 2419 71 0 0 chr11 29685199 29685494 -121098059 - AluY SINE Alu -14 297 3 13237 146 33 9 chr11 29685494 29686193 -121097360 - Tigger2 DNA MER2_type -1681 1037 357 181 238 307 0 chr11 29686315 29686416 -121097137 - MIR SINE MIR -94 168 37 248 311 0 27 chr11 29686732 29686806 -121096747 + L2 LINE L2 3242 3313 0 359 288 165 0 chr11 29688364 29688535 -121095018 + MIR SINE MIR 4 203 -59 739 176 38 19 chr11 29689004 29689163 -121094390 + MER5A DNA MER1_type 28 189 0 439 265 129 14 chr11 29689172 29689319 -121094234 - MIR SINE MIR -77 185 22 189 352 44 0 chr11 29689424 29689534 -121094019 + MIR SINE MIR 21 137 -71 204 129 0 0 chr11 29690173 29690204 -121093349 + MIR SINE MIR 119 149 -113 284 211 14 14 chr11 29690257 29690328 -121093225 + MER117 DNA MER1_type 22 92 -105 264 321 43 21 chr11 29690747 29690887 -121092666 + MIR SINE MIR 120 262 0 374 365 114 5 chr11 29693383 29693602 -121089951 - MIR SINE MIR -14 248 6 272 303 79 40 chr11 29695462 29695614 -121087939 + MIR3 SINE MIR 47 204 -4 21 57 0 0 chr11 29696323 29696358 -121087195 + AT_rich Low_complexity Low_complexity 1 35 0 734 275 75 10 chr11 29696409 29696609 -121086944 + MIR SINE MIR 42 254 -8 495 301 53 34 chr11 29696617 29697071 -121086482 - L1MC/D LINE L1 -332 5789 5305 220 305 17 17 chr11 29697244 29697303 -121086250 + L2 LINE L2 3245 3303 -10 423 0 0 0 chr11 29697370 29697417 -121086136 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 368 290 57 48 chr11 29699077 29699201 -121084352 + L2 LINE L2 3139 3263 -9 284 399 65 36 chr11 29699536 29699812 -121083741 - L2 LINE L2 0 3272 2989 22 0 0 0 chr11 29699822 29699844 -121083709 + AT_rich Low_complexity Low_complexity 1 22 0 227 200 0 17 chr11 29700832 29700892 -121082661 + (TA)n Simple_repeat Simple_repeat 2 60 0 279 0 0 0 chr11 29700895 29700926 -121082627 + (CA)n Simple_repeat Simple_repeat 2 32 0 274 29 57 0 chr11 29700937 29700972 -121082581 + MLT2D LTR ERVL 378 414 0 389 311 61 18 chr11 29701805 29701969 -121081584 - LTR16C LTR ERVL -223 268 98 2317 105 0 0 chr11 29702756 29703060 -121080493 - AluSx SINE Alu -8 304 1 186 43 0 0 chr11 29703104 29703127 -121080426 + (T)n Simple_repeat Simple_repeat 1 23 0 181 191 95 0 chr11 29703577 29703619 -121079934 + L2 LINE L2 3265 3310 -3 201 375 0 14 chr11 29703876 29703948 -121079605 + MIR SINE MIR 6 76 -186 1836 161 0 7 chr11 29703968 29704259 -121079294 + AluSx SINE Alu 1 289 -23 2124 194 50 11 chr11 29704284 29704387 -121079166 - L1MB1 LINE L1 0 6168 6070 1959 148 14 38 chr11 29704387 29704731 -121078822 + MER1B DNA MER1_type 2 337 0 2124 194 50 11 chr11 29704731 29705091 -121078462 - L1MB1 LINE L1 -98 6070 5687 215 279 139 13 chr11 29705098 29705177 -121078376 + MIR SINE MIR 172 260 -2 1470 139 0 5 chr11 29705673 29705888 -121077665 + AluSq SINE Alu 37 250 -63 2289 104 0 7 chr11 29706038 29706337 -121077216 - AluSq SINE Alu -15 298 2 788 132 0 105 chr11 29706434 29706586 -121076967 + Tigger1 DNA MER2_type 1 136 -2282 1398 106 14 18 chr11 29706609 29706826 -121076727 + Tigger1 DNA MER2_type 2203 2418 0 364 267 87 7 chr11 29707306 29707383 -121076170 - MIR SINE MIR -18 244 175 511 90 26 0 chr11 29707383 29707461 -121076092 + MADE1 DNA Mariner 1 80 0 364 267 87 7 chr11 29707461 29707533 -121076020 - MIR SINE MIR -87 175 83 433 306 81 86 chr11 29708335 29708756 -121074797 - L2 LINE L2 -27 3245 2827 304 261 0 11 chr11 29709498 29709586 -121073967 + CT-rich Low_complexity Low_complexity 1 87 0 241 429 0 0 chr11 29710138 29710243 -121073310 + L3 LINE CR1 195 299 -1278 2023 134 0 3 chr11 29710701 29710993 -121072560 - AluSx SINE Alu -21 291 1 326 313 33 27 chr11 29712273 29712423 -121071130 + MIR SINE MIR 20 170 -92 219 267 95 57 chr11 29712678 29712783 -121070770 + L2 LINE L2 3200 3308 -5 333 313 121 16 chr11 29712934 29713116 -121070437 + MIR SINE MIR 36 236 -26 505 252 7 0 chr11 29713890 29714025 -121069528 + MIR3 SINE MIR 65 200 -8 729 210 0 0 chr11 29714843 29714967 -121068586 - FLAM_A SINE Alu -9 124 1 2533 253 118 55 chr11 29716091 29717341 -121066212 - L2 LINE L2 0 3313 1928 219 265 124 19 chr11 29718170 29718273 -121065280 - MIR SINE MIR -31 177 55 24 32 0 0 chr11 29718623 29718654 -121064899 + AT_rich Low_complexity Low_complexity 1 31 0 33 25 0 0 chr11 29719436 29719476 -121064077 + AT_rich Low_complexity Low_complexity 1 40 0 244 271 0 17 chr11 29719819 29719878 -121063675 + MIR SINE MIR 199 256 -6 217 216 0 20 chr11 29720401 29720452 -121063101 - MIR SINE MIR -3 259 210 238 238 38 25 chr11 29720493 29720573 -121062980 - MER94 DNA DNA -14 120 40 443 284 97 17 chr11 29720791 29720967 -121062586 - MIR SINE MIR -70 192 3 324 335 30 36 chr11 29721169 29721336 -121062217 - MIR SINE MIR -50 212 47 208 315 34 22 chr11 29721710 29721799 -121061754 + MIR SINE MIR 72 161 -101 606 289 6 25 chr11 29721897 29722056 -121061497 - L2 LINE L2 0 3313 3158 634 253 163 44 chr11 29722077 29722397 -121061156 - MLT1I LTR MaLR -8 401 44 1304 297 109 20 chr11 29722422 29723126 -121060427 - L2 LINE L2 -168 3145 2381 185 382 49 10 chr11 29723151 29723253 -121060300 - MIR SINE MIR -68 194 89 229 395 38 58 chr11 29723595 29723939 -121059614 - L2 LINE L2 0 3272 2936 1314 189 19 19 chr11 29724004 29724263 -121059290 + AluJo SINE Alu 34 292 -20 229 353 92 20 chr11 29724276 29724429 -121059124 + MER117 DNA MER1_type 1 164 -33 214 266 16 16 chr11 29724968 29725032 -121058521 - MIR SINE MIR -3 259 196 3729 202 91 74 chr11 29726325 29727750 -121055803 - Charlie1a DNA MER1_type 0 1455 7 570 216 7 7 chr11 29728138 29728277 -121055276 - LTR37B LTR ERV1 0 468 330 237 108 0 0 chr11 29728304 29728341 -121055212 + (GA)n Simple_repeat Simple_repeat 2 38 0 436 245 0 0 chr11 29728350 29728452 -121055101 - LTR37B LTR ERV1 -169 299 198 522 298 21 11 chr11 29728498 29728689 -121054864 - LTR37B LTR ERV1 -270 198 6 222 91 0 0 chr11 29728701 29728734 -121054819 + (CAA)n Simple_repeat Simple_repeat 2 34 0 27 0 0 0 chr11 29728802 29728829 -121054724 + AT_rich Low_complexity Low_complexity 1 27 0 255 161 36 0 chr11 29728863 29728919 -121054634 + L1MA2 LINE L1 6240 6297 -7 33 0 0 0 chr11 29728920 29728953 -121054600 + AT_rich Low_complexity Low_complexity 1 33 0 368 271 171 0 chr11 29728953 29729082 -121054471 - MIR SINE MIR -56 206 56 414 224 134 0 chr11 29729232 29729366 -121054187 - L1ME4a LINE L1 -1 6120 5969 350 248 46 0 chr11 29729433 29729542 -121054011 - L1ME4a LINE L1 -317 5804 5691 294 265 127 0 chr11 29729553 29729676 -121053877 - MIR SINE MIR -71 191 49 451 327 12 36 chr11 29731822 29731987 -121051566 + MIR3 SINE MIR 38 198 -10 23 33 0 0 chr11 29732147 29732177 -121051376 + AT_rich Low_complexity Low_complexity 1 30 0 1662 183 7 7 chr11 29732177 29732461 -121051092 - AluJb SINE Alu -28 284 1 348 319 30 0 chr11 29732463 29732598 -121050955 + MIR SINE MIR 124 262 0 273 342 0 0 chr11 29732599 29732675 -121050878 + MIR SINE MIR 184 259 -3 568 0 28 0 chr11 29733160 29733232 -121050321 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 1374 211 26 89 chr11 29733236 29733652 -121049901 - MLT1B LTR MaLR 0 390 1 552 305 79 0 chr11 29733996 29734173 -121049380 + L2 LINE L2 2873 3063 -250 2353 167 43 17 chr11 29734186 29734776 -121048777 + MER39B LTR ERV1 10 653 0 269 358 7 29 chr11 29734878 29735015 -121048538 + L2 LINE L2 3180 3313 0 618 279 84 14 chr11 29735673 29735888 -121047665 - MIR SINE MIR -27 235 6 493 268 21 21 chr11 29736073 29736215 -121047338 - MIR3 SINE MIR -5 203 62 182 309 18 0 chr11 29737326 29737381 -121046172 + MIR SINE MIR 97 152 -110 440 332 81 36 chr11 29737405 29737652 -121045901 - MIR SINE MIR 0 262 5 21 0 0 0 chr11 29738463 29738484 -121045069 + AT_rich Low_complexity Low_complexity 1 21 0 1994 154 0 3 chr11 29740084 29740383 -121043170 + AluSx SINE Alu 1 298 -14 2586 174 41 85 chr11 29740913 29741575 -121041978 + LTR27 LTR ERV1 3 635 -1 185 250 16 16 chr11 29741586 29741650 -121041903 + MIR SINE MIR 149 212 -50 188 368 0 0 chr11 29744146 29744214 -121039339 - L2 LINE L2 -1 3271 3204 354 342 19 47 chr11 29744767 29745024 -121038529 + L2 LINE L2 2835 3084 -188 369 0 0 0 chr11 29745078 29745119 -121038434 + (TG)n Simple_repeat Simple_repeat 2 42 0 187 277 0 0 chr11 29745123 29745170 -121038383 + L2 LINE L2 3191 3237 -76 1969 196 65 11 chr11 29745434 29745877 -121037676 + MLT1C LTR MaLR 1 467 0 27 0 0 0 chr11 29746842 29746869 -121036684 + AT_rich Low_complexity Low_complexity 1 27 0 412 327 34 92 chr11 29747820 29748147 -121035406 + L2 LINE L2 2965 3272 0 2458 81 7 0 chr11 29748644 29748953 -121034600 - AluSx SINE Alu -1 311 1 254 313 21 31 chr11 29749029 29749125 -121034428 + MER5A DNA MER1_type 84 178 -11 289 409 120 12 chr11 29749246 29749505 -121034048 + L2 LINE L2 2967 3253 -19 183 204 0 0 chr11 29749506 29749550 -121034003 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 22 35 0 0 chr11 29749983 29750012 -121033541 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr11 29750075 29750111 -121033442 + AT_rich Low_complexity Low_complexity 1 36 0 217 313 17 61 chr11 29750244 29750359 -121033194 - MIR SINE MIR -50 212 103 560 300 144 11 chr11 29755988 29756258 -121027295 + L2 LINE L2 3008 3313 0 2153 145 105 13 chr11 29756397 29756789 -121026764 - MSTA LTR MaLR 0 428 1 308 160 76 0 chr11 29757872 29757991 -121025562 + (TA)n Simple_repeat Simple_repeat 1 128 0 2165 120 0 0 chr11 29758117 29758408 -121025145 - AluSx SINE Alu -21 291 1 1000 195 22 34 chr11 29758813 29759080 -121024473 - L1MC5 LINE L1 -722 7239 6976 23 86 0 0 chr11 29759194 29759252 -121024301 + AT_rich Low_complexity Low_complexity 1 58 0 1666 284 104 20 chr11 29759402 29759998 -121023555 + L2 LINE L2 2155 2800 -514 636 236 46 36 chr11 29760173 29760368 -121023185 + L2 LINE L2 3117 3313 0 229 190 13 25 chr11 29760411 29760490 -121023063 - L1M3de LINE L1 -4833 2045 1968 361 333 48 29 chr11 29760503 29760794 -121022759 - L1MEc LINE L1 -5327 1713 1355 272 298 77 40 chr11 29761398 29761646 -121021907 - L1MC/D LINE L1 -2152 5656 5400 21 71 0 0 chr11 29762273 29762315 -121021238 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr11 29762662 29762683 -121020870 + AT_rich Low_complexity Low_complexity 1 21 0 296 298 44 44 chr11 29762767 29763039 -121020514 - L1MC/D LINE L1 -1998 4148 3877 2044 124 7 0 chr11 29763219 29763510 -121020043 - AluSx SINE Alu -19 293 1 251 303 20 10 chr11 29763834 29763933 -121019620 + LTR67 LTR ERVL 458 557 0 2168 116 7 0 chr11 29765287 29765590 -121017963 - AluSq SINE Alu -6 307 3 255 227 13 27 chr11 29765608 29765683 -121017870 - MLT1-int LTR MaLR -1294 77 4 307 293 122 8 chr11 29765925 29766048 -121017505 - MLT1H LTR MaLR -401 148 12 281 401 12 66 chr11 29766165 29766589 -121016964 - L3 LINE CR1 -1 1576 1176 23 0 0 0 chr11 29767625 29767648 -121015905 + AT_rich Low_complexity Low_complexity 1 23 0 231 291 73 46 chr11 29768387 29768538 -121015015 + MIR SINE MIR 99 253 -9 183 80 0 0 chr11 29768598 29768623 -121014930 + (TG)n Simple_repeat Simple_repeat 2 26 0 367 353 0 0 chr11 29769385 29769507 -121014046 + MIR3 SINE MIR 33 154 -54 362 238 9 9 chr11 29769528 29769633 -121013920 - LTR67 LTR ERVL -25 532 428 268 277 31 17 chr11 29770111 29770215 -121013338 - MER5A DNA MER1_type -76 113 2 387 0 0 0 chr11 29770243 29770286 -121013267 + (CA)n Simple_repeat Simple_repeat 2 44 0 249 315 142 24 chr11 29771091 29771218 -121012335 + MIR SINE MIR 55 196 -66 194 103 0 26 chr11 29771265 29771304 -121012249 + (TTA)n Simple_repeat Simple_repeat 2 39 0 209 347 27 0 chr11 29771591 29771666 -121011887 - MIR3 SINE MIR -33 175 99 478 267 48 14 chr11 29771819 29771965 -121011588 - L2 LINE L2 -1 3312 3162 368 249 162 27 chr11 29772712 29772897 -121010656 + MIR SINE MIR 43 252 -10 1587 234 45 92 chr11 29773233 29773788 -121009765 - MER77 LTR ERV1 -8 597 69 212 277 0 0 chr11 29774200 29774247 -121009306 - L2 LINE L2 0 3313 3267 410 352 90 20 chr11 29774704 29775059 -121008494 - L2 LINE L2 -586 2728 2349 1387 244 28 3 chr11 29775210 29775530 -121008023 + MLT1D LTR MaLR 178 505 0 2361 226 18 50 chr11 29775530 29776208 -121007345 + MLT1D-int LTR MaLR 1 656 -715 1707 221 11 160 chr11 29776266 29776371 -121007182 + MLT1D-int LTR MaLR 661 780 -591 2391 71 10 10 chr11 29776371 29776680 -121006873 + AluY SINE Alu 1 309 -2 1707 221 11 160 chr11 29776680 29777379 -121006174 + MLT1D-int LTR MaLR 780 1345 -26 2119 192 27 74 chr11 29777393 29777909 -121005644 + MLT1D LTR MaLR 1 492 -13 297 316 101 32 chr11 29778135 29778293 -121005260 + MIR SINE MIR 21 189 -73 760 219 158 5 chr11 29778325 29778521 -121005032 - MIR SINE MIR -30 232 7 1265 308 122 18 chr11 29779815 29780413 -121003140 - L2 LINE L2 -622 2692 2033 3236 149 23 21 chr11 29780596 29781119 -121002434 + MER1A DNA MER1_type 1 524 -3 23 0 0 0 chr11 29781385 29781408 -121002145 + AT_rich Low_complexity Low_complexity 1 23 0 451 293 81 60 chr11 29782143 29782426 -121001127 - LTR67 LTR ERVL -164 393 105 2095 108 0 0 chr11 29782891 29783168 -121000385 + AluSc SINE Alu 1 277 -32 1164 78 13 13 chr11 29783168 29783482 -121000071 + (GAAA)n Simple_repeat Simple_repeat 1 314 0 1189 252 78 5 chr11 29784007 29784380 -120999173 - L1ME2 LINE L1 0 6164 5765 493 279 120 13 chr11 29784584 29784742 -120998811 - MIR SINE MIR -69 193 19 402 353 68 14 chr11 29785127 29785348 -120998205 + MIR SINE MIR 20 252 -10 733 292 53 13 chr11 29785575 29785801 -120997752 + MIR SINE MIR 13 247 -15 494 280 86 16 chr11 29786214 29786400 -120997153 + MIR SINE MIR 64 262 0 2124 134 125 2 chr11 29787285 29787661 -120995892 + MSTA LTR MaLR 1 428 0 408 279 123 19 chr11 29789305 29789459 -120994094 - L2 LINE L2 -10 3262 3093 248 250 0 0 chr11 29789694 29789746 -120993807 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 810 63 46 11 chr11 29789972 29790146 -120993407 + (TA)n Simple_repeat Simple_repeat 1 180 0 1819 200 46 10 chr11 29790831 29791489 -120992064 + L1M4c LINE L1 1675 2833 -3549 25393 146 21 12 chr11 29791494 29792715 -120990838 + L1PA8A LINE L1 2 1210 -5236 189 74 0 0 chr11 29792715 29792742 -120990811 + (CAA)n Simple_repeat Simple_repeat 1 27 0 25393 146 21 12 chr11 29792742 29797844 -120985709 + L1PA8A LINE L1 1210 6446 0 9697 203 25 12 chr11 29797828 29798669 -120984884 + L1PA16 LINE L1 2816 3645 -2757 * 1927 174 0 16 chr11 29798669 29798985 -120984568 + AluJb SINE Alu 1 311 -1 9697 203 25 12 chr11 29798985 29801669 -120981884 + L1PA16 LINE L1 3645 6384 -18 205 180 33 16 chr11 29801683 29801744 -120981809 + A-rich Low_complexity Low_complexity 3 64 0 185 179 0 18 chr11 29802286 29802342 -120981211 + (CA)n Simple_repeat Simple_repeat 2 56 0 1601 150 0 0 chr11 29802674 29802907 -120980646 + AluJb SINE Alu 1 233 -79 1895 162 39 43 chr11 29802907 29803267 -120980286 + THE1B LTR MaLR 1 360 -72 1185 66 0 0 chr11 29803267 29803419 -120980134 - L1PA5 LINE L1 -4 6150 5999 1895 162 39 43 chr11 29803419 29803480 -120980073 + THE1B LTR MaLR 360 420 -12 219 69 0 0 chr11 29803491 29803520 -120980033 + (TA)n Simple_repeat Simple_repeat 1 29 0 10432 136 16 1 chr11 29803520 29805077 -120978476 + THE1B-int LTR MaLR 1 1580 0 1936 149 27 49 chr11 29805077 29805446 -120978107 + THE1B LTR MaLR 3 364 0 414 164 14 0 chr11 29805446 29805519 -120978034 + AluJb SINE Alu 229 302 -10 22 0 0 0 chr11 29805820 29805842 -120977711 + AT_rich Low_complexity Low_complexity 1 22 0 1352 130 65 0 chr11 29806362 29806562 -120976991 - AluSx SINE Alu -99 213 1 340 344 55 12 chr11 29808134 29808297 -120975256 + L1MC4a LINE L1 3521 3690 -2456 2133 75 6 70 chr11 29808333 29808664 -120974889 + AluSg SINE Alu 1 310 0 229 250 0 0 chr11 29808670 29808730 -120974823 + L1P LINE L1 3739 3798 -2348 231 204 143 82 chr11 29809260 29809325 -120974228 - MER5C DNA MER1_type 0 324 250 1791 164 0 30 chr11 29809325 29809630 -120973923 - AluJb SINE Alu -16 296 1 231 204 143 82 chr11 29809630 29809662 -120973891 - MER5C DNA MER1_type -74 250 221 371 308 65 34 chr11 29809812 29810228 -120973325 + L1MC4a LINE L1 4519 4947 -1199 21 71 0 0 chr11 29810270 29810312 -120973241 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr11 29810485 29810511 -120973042 + AT_rich Low_complexity Low_complexity 1 26 0 659 312 85 20 chr11 29810524 29811018 -120972535 + L1MC4a LINE L1 5305 5830 -1978 * 1610 274 106 19 chr11 29811010 29811587 -120971966 + L1M3e LINE L1 466 1092 -6397 * 2382 266 43 45 chr11 29811585 29811977 -120971576 + L1M3e LINE L1 2018 2409 -5156 2267 118 0 6 chr11 29811977 29812291 -120971262 - AluSx SINE Alu 0 312 1 2382 266 43 45 chr11 29812291 29813673 -120969880 + L1M3e LINE L1 2409 3751 -3814 950 191 47 63 chr11 29813677 29814016 -120969537 - MSTD LTR MaLR -4 392 9 6216 244 28 47 chr11 29814023 29815645 -120967908 - MSTD-int LTR MaLR 0 1735 144 21544 144 41 12 chr11 29815646 29816207 -120967346 - L1 LINE L1 -3524 4041 3497 186 43 0 0 chr11 29816207 29816230 -120967323 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 21544 144 41 12 chr11 29816230 29819585 -120963968 - L1 LINE L1 -4068 3497 16 576 194 79 24 chr11 29819570 29819735 -120963818 - MSTD-int LTR MaLR -1560 175 2 * 1157 202 151 42 chr11 29819737 29820094 -120963459 - MSTD LTR MaLR 0 396 1 1639 253 69 21 chr11 29820095 29820657 -120962896 + L1M3e LINE L1 3748 4336 -3229 351 0 0 0 chr11 29822117 29822156 -120961397 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr11 29822720 29822742 -120960811 + AT_rich Low_complexity Low_complexity 1 22 0 266 170 6 2 chr11 29822910 29822984 -120960569 - MLT1H LTR MaLR -20 606 461 681 243 55 72 chr11 29823096 29823388 -120960165 - MLT1H LTR MaLR -251 298 12 2582 205 78 8 chr11 29823785 29824574 -120958979 + MER73 LTR ERVL 1 641 -3 699 273 28 0 chr11 29825174 29825350 -120958203 + MER117 DNA MER1_type 16 196 -1 201 39 0 0 chr11 29825382 29825408 -120958145 + (A)n Simple_repeat Simple_repeat 1 26 0 187 313 62 16 chr11 29825410 29825474 -120958079 - MIR SINE MIR -106 102 36 240 217 83 0 chr11 29825920 29825980 -120957573 + LTR67 LTR ERVL 491 555 -2 2271 83 3 61 chr11 29826268 29826595 -120956958 - AluSp SINE Alu -5 308 1 2081 104 3 17 chr11 29828798 29829117 -120954436 - AluSg SINE Alu 0 310 1 252 335 141 12 chr11 29829355 29829525 -120954028 + MIR SINE MIR 22 213 -49 249 300 31 31 chr11 29829710 29829840 -120953713 - L2 LINE L2 -2 3270 3141 742 250 54 73 chr11 29830173 29830433 -120953120 - MIR SINE MIR 0 262 8 301 260 8 8 chr11 29830696 29830823 -120952730 + CT-rich Low_complexity Low_complexity 2 128 0 2078 68 0 0 chr11 29831103 29831374 -120952179 + AluY SINE Alu 37 307 0 29 28 0 0 chr11 29831748 29831784 -120951769 + AT_rich Low_complexity Low_complexity 1 36 0 202 345 35 0 chr11 29832290 29832377 -120951176 - MIR SINE MIR -5 257 168 2452 80 0 0 chr11 29833151 29833462 -120950091 - AluY SINE Alu 0 311 1 617 274 157 43 chr11 29834194 29834519 -120949034 + LTR33 LTR ERVL 1 362 -159 856 287 35 4 chr11 29834786 29835040 -120948513 - MIR SINE MIR 0 262 1 461 283 122 27 chr11 29835360 29835802 -120947751 + L1ME4a LINE L1 5565 6048 -73 209 324 73 59 chr11 29836193 29836329 -120947224 + MIR SINE MIR 55 192 -70 527 283 7 28 chr11 29836408 29836553 -120947000 + MIR3 SINE MIR 67 208 0 318 146 11 45 chr11 29837279 29837368 -120946185 + (CATA)n Simple_repeat Simple_repeat 3 88 0 233 335 42 12 chr11 29837410 29837533 -120946020 - MIR3 SINE MIR -51 157 59 181 338 15 0 chr11 29838262 29838330 -120945223 + L2 LINE L2 3204 3272 0 320 0 25 0 chr11 29838677 29838717 -120944836 + (GA)n Simple_repeat Simple_repeat 1 41 0 263 324 108 7 chr11 29838749 29838888 -120944665 + MLT1K LTR MaLR 422 574 -14 1666 167 18 7 chr11 29839062 29839343 -120944210 - AluJb SINE Alu 0 312 29 360 314 82 36 chr11 29839499 29839693 -120943860 + MIR SINE MIR 4 206 -56 229 208 57 0 chr11 29839747 29839800 -120943753 - L2 LINE L2 0 3272 3217 859 275 168 28 chr11 29840387 29840714 -120942839 - L2 LINE L2 -100 3213 2841 313 300 87 60 chr11 29840736 29840886 -120942667 + L2 LINE L2 3117 3270 -2 281 286 102 20 chr11 29841459 29841557 -120941996 - MIR3 SINE MIR -90 118 13 341 185 0 12 chr11 29843461 29843542 -120940011 + GA-rich Low_complexity Low_complexity 3 82 0 403 253 54 76 chr11 29843543 29843777 -120939776 + L1 LINE L1 2810 3042 -3104 21 36 0 0 chr11 29843794 29843822 -120939731 + AT_rich Low_complexity Low_complexity 1 28 0 330 239 42 2 chr11 29843832 29843949 -120939604 + L1 LINE L1 3856 3976 -2170 389 361 101 15 chr11 29843956 29844432 -120939121 + L1 LINE L1 4023 4539 -1607 1579 201 10 13 chr11 29845040 29845348 -120938205 - AluJo SINE Alu -5 307 1 367 310 41 55 chr11 29845522 29845793 -120937760 + MLT1J LTR MaLR 241 507 -4 211 321 38 0 chr11 29845818 29845871 -120937682 - L2 LINE L2 -78 3194 3140 198 191 0 0 chr11 29846012 29846059 -120937494 + (TATG)n Simple_repeat Simple_repeat 3 49 0 582 250 5 88 chr11 29847700 29847892 -120935661 - MER5B DNA MER1_type -2 176 1 21621 96 15 6 chr11 29848090 29853867 -120929686 - L1PA7 LINE L1 0 6469 648 10637 29 0 0 chr11 29853866 29855125 -120928428 - L1P LINE L1 -1031 5115 3857 * 1655 25 0 0 chr11 29855122 29855318 -120928235 + L1P LINE L1 5085 5280 -866 * 285 140 35 35 chr11 29855988 29856045 -120927508 + MIR SINE MIR 58 114 -148 22 56 0 0 chr11 29856500 29856536 -120927017 + AT_rich Low_complexity Low_complexity 1 36 0 313 298 79 102 chr11 29856651 29856916 -120926637 - L2 LINE L2 0 3272 3014 284 350 133 51 chr11 29857099 29857744 -120925809 - L2 LINE L2 -586 2728 2031 877 233 28 60 chr11 29857798 29858047 -120925506 - MER102b DNA MER1_type -2 339 99 279 222 16 0 chr11 29858384 29858447 -120925106 + MER94 DNA DNA 2 65 -69 211 261 14 43 chr11 29859493 29859562 -120923991 - MIR3 SINE MIR -21 187 121 24 91 0 0 chr11 29860206 29860272 -120923281 + AT_rich Low_complexity Low_complexity 1 66 0 631 228 117 0 chr11 29860532 29860677 -120922876 + MLT1E LTR MaLR 1 162 -431 182 375 0 23 chr11 29862556 29862644 -120920909 - MIR SINE MIR -124 138 53 1809 207 40 42 chr11 29864525 29865028 -120918525 - MLT1D LTR MaLR -3 502 1 207 394 71 0 chr11 29865368 29865467 -120918086 - L2 LINE L2 -30 3242 3137 2369 78 0 16 chr11 29866120 29866429 -120917124 + AluY SINE Alu 2 305 -6 1871 153 29 40 chr11 29867225 29867604 -120915949 + THE1C LTR MaLR 1 375 0 212 143 71 0 chr11 29868248 29868290 -120915263 + L2 LINE L2 3216 3260 -12 249 33 0 0 chr11 29868290 29868320 -120915233 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 196 326 20 20 chr11 29869239 29869337 -120914216 + L2 LINE L2 2875 2972 -341 197 292 57 99 chr11 29869501 29869693 -120913860 + L2 LINE L2 3130 3313 0 * 255 246 186 8 chr11 29869680 29869798 -120913755 + MIR SINE MIR 92 230 -32 208 313 31 0 chr11 29869862 29869926 -120913627 + MIR3 SINE MIR 92 157 -51 2208 142 73 19 chr11 29870357 29870767 -120912786 - MSTB1 LTR MaLR 0 432 1 738 269 92 21 chr11 29871123 29871361 -120912192 - MIR SINE MIR 0 262 8 920 253 96 94 chr11 29871393 29871927 -120911626 + MLT1F LTR MaLR 5 539 -3 278 271 0 42 chr11 29871962 29872058 -120911495 + CT-rich Low_complexity Low_complexity 3 94 0 298 299 142 8 chr11 29872058 29872185 -120911368 - MIR SINE MIR -14 248 105 573 285 50 11 chr11 29872378 29872557 -120910996 - MIR SINE MIR 0 262 77 291 267 158 17 chr11 29872600 29872720 -120910833 + L2 LINE L2 3136 3272 0 324 332 45 64 chr11 29873286 29873488 -120910065 - L2 LINE L2 0 3272 3075 263 315 144 18 chr11 29874157 29874379 -120909174 + L2 LINE L2 477 726 -2588 342 276 103 33 chr11 29875278 29875521 -120908032 - L1M4 LINE L1 -2012 4370 4111 22 0 0 0 chr11 29876145 29876167 -120907386 + AT_rich Low_complexity Low_complexity 1 22 0 1535 194 16 57 chr11 29876402 29876789 -120906764 - L1MA7 LINE L1 -10 6281 5911 1367 207 66 18 chr11 29876809 29877157 -120906396 - MLT1A1 LTR MaLR -11 354 1 2641 266 81 7 chr11 29877233 29878348 -120905205 - L1M4 LINE L1 -4519 1865 827 207 0 0 0 chr11 29878508 29878531 -120905022 + (TTG)n Simple_repeat Simple_repeat 2 24 0 662 342 101 47 chr11 29878759 29879373 -120904180 - L1M3d LINE L1 -5237 654 8 808 312 119 56 chr11 29880385 29881118 -120902435 + L2 LINE L2 2518 3313 0 223 333 48 0 chr11 29881679 29881742 -120901811 + L2 LINE L2 3148 3213 -59 21 0 0 0 chr11 29882340 29882361 -120901192 + AT_rich Low_complexity Low_complexity 1 21 0 390 319 52 52 chr11 29882984 29883194 -120900359 - MIR SINE MIR -5 257 48 21 0 0 0 chr11 29884477 29884498 -120899055 + AT_rich Low_complexity Low_complexity 1 21 0 260 379 42 27 chr11 29884706 29885229 -120898324 - L2 LINE L2 -214 3058 2527 180 388 19 10 chr11 29885668 29885771 -120897782 - L2 LINE L2 -980 2334 2231 1129 65 13 7 chr11 29886145 29886299 -120897254 + L1PA5 LINE L1 5996 6150 -4 290 298 12 0 chr11 29887444 29887528 -120896025 - L2 LINE L2 0 3272 3188 290 298 96 40 chr11 29888586 29888696 -120894857 + MIR SINE MIR 39 162 -100 2216 111 3 0 chr11 29888696 29888993 -120894560 + AluSc SINE Alu 1 298 -11 290 298 96 40 chr11 29888993 29889061 -120894492 + MIR SINE MIR 162 225 -37 233 241 18 80 chr11 29890257 29890369 -120893184 + MIR SINE MIR 152 256 -6 243 322 144 0 chr11 29890523 29890641 -120892912 - MIR3 SINE MIR -62 146 12 574 287 90 37 chr11 29891926 29892001 -120891552 + L2 LINE L2 991 1061 -2253 658 337 47 49 chr11 29892001 29892452 -120891101 + LTR16A LTR ERVL 1 450 0 574 287 90 37 chr11 29892452 29892644 -120890909 + L2 LINE L2 1061 1272 -2042 267 247 12 24 chr11 29892762 29892847 -120890706 + L2 LINE L2 1598 1681 -1633 576 323 55 17 chr11 29892881 29893116 -120890437 + MIR SINE MIR 11 254 -8 1620 324 102 23 chr11 29893186 29894151 -120889402 + L2 LINE L2 1732 2772 -542 385 345 47 30 chr11 29894249 29894481 -120889072 + L2 LINE L2 2932 3167 -146 247 116 93 0 chr11 29894481 29894524 -120889029 + MSTB2 LTR MaLR 1 47 -410 889 142 0 0 chr11 29894640 29894767 -120888786 - AluY SINE Alu -11 300 174 655 227 30 17 chr11 29894796 29894990 -120888563 + MSTB2 LTR MaLR 201 457 0 332 265 140 37 chr11 29894990 29895126 -120888427 + L2 LINE L2 3163 3312 -1 22 0 0 0 chr11 29945422 29945444 -120838109 + AT_rich Low_complexity Low_complexity 1 22 0 1231 184 0 93 chr11 29945444 29945787 -120837766 + AluY SINE Alu 1 311 0 251 271 178 28 chr11 29946063 29946170 -120837383 + LTR16A LTR ERVL 29 151 -299 433 261 97 61 chr11 29946198 29946363 -120837190 + LTR16A LTR ERVL 209 379 -71 252 345 105 66 chr11 29947431 29948278 -120835275 + L2 LINE L2 1691 2570 -744 305 290 62 43 chr11 29948651 29948813 -120834740 + L2 LINE L2 3149 3313 0 22 0 0 0 chr11 29949315 29949337 -120834216 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 29949667 29949695 -120833858 + AT_rich Low_complexity Low_complexity 1 28 0 247 206 0 43 chr11 29950201 29950293 -120833260 + (TATATG)n Simple_repeat Simple_repeat 4 91 0 203 264 75 0 chr11 29950382 29950435 -120833118 - MIR SINE MIR -3 259 203 236 383 139 0 chr11 29950454 29950569 -120832984 + L2 LINE L2 3142 3272 0 29 0 0 0 chr11 29951025 29951054 -120832499 + AT_rich Low_complexity Low_complexity 1 29 0 5454 179 35 26 chr11 29951428 29952765 -120830788 + L1PB3 LINE L1 3985 5347 -807 2346 106 15 3 chr11 29952765 29953105 -120830448 + L1PA10 LINE L1 5821 6164 -4 5454 179 35 26 chr11 29953105 29953918 -120829635 + L1PB3 LINE L1 5347 6151 -3 463 332 4 97 chr11 29954056 29954324 -120829229 - L2 LINE L2 -43 3229 2987 377 295 60 56 chr11 29954631 29954899 -120828654 - L2 LINE L2 -928 2386 2118 367 243 114 14 chr11 29955024 29955164 -120828389 - L1ME4a LINE L1 0 6121 5968 357 229 146 73 chr11 29955196 29955401 -120828152 + MLT1H LTR MaLR 124 343 -206 334 200 56 22 chr11 29955478 29955568 -120827985 + MLT1H LTR MaLR 455 547 -2 274 376 20 0 chr11 29955618 29955719 -120827834 + MIR SINE MIR 40 142 -66 1589 162 40 15 chr11 29955852 29956180 -120827373 + MER44D DNA MER2_type 1 606 -3 379 303 67 55 chr11 29956365 29956530 -120827023 - MIR SINE MIR -90 172 6 239 0 32 0 chr11 29957945 29957976 -120825577 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 27 0 0 0 chr11 29959177 29959204 -120824349 + AT_rich Low_complexity Low_complexity 1 27 0 227 351 53 11 chr11 29959258 29959352 -120824201 - L2 LINE L2 -199 3073 2976 307 198 40 20 chr11 29961020 29961121 -120822432 + (TA)n Simple_repeat Simple_repeat 2 104 0 1541 181 8 8 chr11 29961308 29961573 -120821980 + AluJo SINE Alu 13 277 -35 375 291 16 16 chr11 29961983 29962110 -120821443 - LTR16C LTR ERVL -12 479 353 292 319 52 30 chr11 29962785 29962920 -120820633 - L2 LINE L2 0 3313 3176 356 284 91 72 chr11 29963187 29963451 -120820102 - HAL1 LINE L1 -865 1642 1374 1668 182 0 35 chr11 29963473 29963792 -120819761 - AluJo SINE Alu -4 308 1 2301 97 0 10 chr11 29964370 29964668 -120818885 - AluSq SINE Alu -18 295 1 314 309 125 34 chr11 29965000 29965274 -120818279 - L1ME4a LINE L1 -530 5632 5450 362 310 67 34 chr11 29965276 29965840 -120817713 - L1ME4a LINE L1 -1484 4662 4080 200 351 0 0 chr11 29965984 29966058 -120817495 - MIR SINE MIR -33 229 156 507 289 51 71 chr11 29966058 29966556 -120816997 - L1ME4a LINE L1 -2176 3970 3487 3239 115 37 54 chr11 29966556 29967146 -120816407 - LTR19B LTR ERV1 0 580 1 507 289 51 71 chr11 29967146 29967309 -120816244 - L1ME4a LINE L1 -2659 3487 3322 1215 161 87 29 chr11 29967309 29967551 -120816002 - AluJo SINE Alu -45 267 12 21 36 0 0 chr11 29967591 29967619 -120815934 + AT_rich Low_complexity Low_complexity 1 28 0 2441 50 0 0 chr11 29967702 29968001 -120815552 - L1PA3 LINE L1 -3 6152 5854 194 298 39 39 chr11 29968809 29968913 -120814640 + L2 LINE L2 2546 2649 -665 2152 109 13 0 chr11 29969116 29969418 -120814135 - AluSq SINE Alu -7 306 1 453 283 50 85 chr11 29969496 29969779 -120813774 - HAL1 LINE L1 -1424 1083 811 235 289 174 41 chr11 29970848 29970969 -120812584 + MIR3 SINE MIR 20 156 -52 244 258 113 0 chr11 29971433 29971530 -120812023 + MIR SINE MIR 155 262 0 466 322 22 33 chr11 29971871 29972051 -120811502 + MIR SINE MIR 37 214 -48 439 284 34 14 chr11 29972088 29972236 -120811317 - MIR SINE MIR -65 197 47 211 391 65 5 chr11 29972347 29972531 -120811022 + L3b LINE CR1 1262 1456 -127 271 303 171 13 chr11 29972580 29972732 -120810821 + MIR SINE MIR 14 189 -73 231 279 15 0 chr11 29972788 29972856 -120810697 + GA-rich Low_complexity Low_complexity 2 70 0 230 242 16 0 chr11 29973043 29973105 -120810448 + (CA)n Simple_repeat Simple_repeat 2 64 0 592 324 50 8 chr11 29973204 29973442 -120810111 + MIR SINE MIR 11 258 -4 23 0 0 0 chr11 29973500 29973523 -120810030 + AT_rich Low_complexity Low_complexity 1 23 0 350 399 75 0 chr11 29973648 29973836 -120809717 - L3 LINE CR1 -83 1494 1293 225 0 0 0 chr11 29973838 29973863 -120809690 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1286 281 94 24 chr11 29973878 29974407 -120809146 - MLT1H1 LTR MaLR 0 555 1 446 294 87 28 chr11 29975706 29975924 -120807629 - Charlie8 DNA MER1_type -2186 231 1 213 167 24 0 chr11 29976909 29976951 -120806602 + (TA)n Simple_repeat Simple_repeat 2 44 0 1098 244 71 83 chr11 29977004 29977426 -120806127 + MLT1F LTR MaLR 64 455 -87 1727 182 7 0 chr11 29978517 29978813 -120804740 - AluSx SINE Alu -14 298 1 469 331 46 36 chr11 29979432 29979713 -120803840 + L2 LINE L2 2589 2872 -442 2482 67 0 6 chr11 29980089 29980402 -120803151 + AluY SINE Alu 1 311 0 1708 132 169 18 chr11 29981206 29981277 -120802276 - THE1C LTR MaLR 0 375 316 2157 63 0 60 chr11 29981277 29981611 -120801942 + AluY SINE Alu 1 316 0 1708 132 169 18 chr11 29981611 29981864 -120801689 - THE1C LTR MaLR -59 316 1 512 242 70 0 chr11 29981896 29982024 -120801529 - MIR SINE MIR -56 206 70 21 36 0 0 chr11 29982062 29982090 -120801463 + AT_rich Low_complexity Low_complexity 1 28 0 370 346 106 40 chr11 29982206 29982802 -120800751 + L1ME4a LINE L1 5290 5924 -197 24 0 0 0 chr11 29983153 29983177 -120800376 + AT_rich Low_complexity Low_complexity 1 24 0 448 303 134 13 chr11 29983340 29983571 -120799982 - LTR33A LTR ERVL -261 262 4 363 316 44 0 chr11 29983724 29983838 -120799715 - MER94 DNA DNA -15 119 1 624 201 84 29 chr11 29984673 29984963 -120798590 - MLT1A2 LTR MaLR 0 374 2 24 77 0 0 chr11 29985079 29985131 -120798422 + AT_rich Low_complexity Low_complexity 1 52 0 265 270 112 73 chr11 29986047 29986225 -120797328 + MLT1I LTR MaLR 98 282 -127 968 191 70 44 chr11 29986957 29987272 -120796281 - MER33 DNA MER1_type -1 323 1 7364 24 2 0 chr11 29987552 29988417 -120795136 - L1PA3 LINE L1 0 6155 5289 2921 20 0 0 chr11 29988412 29988763 -120794790 + L1PA3 LINE L1 4949 5299 -847 * 2127 96 4 0 chr11 29988803 29989107 -120794446 + AluY SINE Alu 1 305 0 13526 143 21 36 chr11 29989300 29990696 -120792857 + Tigger1 DNA MER2_type 1 1417 -1001 447 19 0 0 chr11 29990696 29990748 -120792805 + (TA)n Simple_repeat Simple_repeat 2 53 0 2067 98 7 0 chr11 29990747 29991045 -120792508 - AluSg SINE Alu 0 303 4 13526 143 21 36 chr11 29991045 29992102 -120791451 + Tigger1 DNA MER2_type 1714 2418 0 619 248 84 36 chr11 29992278 29992593 -120790960 + MLT1H1 LTR MaLR 161 555 0 313 195 98 12 chr11 29992595 29992677 -120790876 + MIR SINE MIR 87 175 -87 264 336 25 0 chr11 29992841 29992960 -120790593 + MARNA DNA Mariner 448 569 -17 23 0 0 0 chr11 29993348 29993371 -120790182 + AT_rich Low_complexity Low_complexity 1 23 0 2393 162 52 0 chr11 29994601 29995008 -120788545 + MSTC LTR MaLR 1 428 0 312 294 123 57 chr11 29995071 29995282 -120788271 + MLT1K LTR MaLR 141 365 -223 24 0 0 0 chr11 29995482 29995506 -120788047 + AT_rich Low_complexity Low_complexity 1 24 0 1977 124 32 0 chr11 29998153 29998436 -120785117 + AluSx SINE Alu 7 298 -14 440 298 112 27 chr11 30000381 30000569 -120782984 + MIR SINE MIR 23 226 -36 242 287 157 35 chr11 30000723 30000838 -120782715 + L2 LINE L2 3144 3272 0 221 288 15 0 chr11 30000846 30000912 -120782641 + L3 LINE CR1 1254 1320 -257 252 325 44 26 chr11 30000972 30001086 -120782467 - MIR SINE MIR -93 169 54 381 255 215 7 chr11 30001953 30002102 -120781451 + MER5A DNA MER1_type 10 189 0 2139 103 0 10 chr11 30002263 30002553 -120781000 + AluSx SINE Alu 1 287 -25 27 0 0 0 chr11 30002560 30002587 -120780966 + AT_rich Low_complexity Low_complexity 1 27 0 424 313 207 32 chr11 30002953 30003359 -120780194 - MLT1H LTR MaLR 0 549 73 2178 74 46 0 chr11 30004310 30004595 -120778958 + AluY SINE Alu 1 298 -13 200 360 51 63 chr11 30005053 30005228 -120778325 + L3 LINE CR1 1401 1573 -4 1486 305 64 39 chr11 30005386 30006109 -120777444 + L2 LINE L2 2313 3047 -266 2312 250 51 55 chr11 30006281 30007162 -120776391 - L1ME2 LINE L1 -9 6224 5352 3372 81 2 9 chr11 30007162 30007609 -120775944 + MLT2A1 LTR ERVL 1 444 0 2312 250 51 55 chr11 30007609 30008222 -120775331 - L1ME2 LINE L1 -881 5352 4738 684 224 4 78 chr11 30008233 30008465 -120775088 + L1ME LINE L1 5602 5816 -350 677 288 143 21 chr11 30008485 30008954 -120774599 - L1ME2 LINE L1 -1851 4364 3839 * 980 265 134 46 chr11 30008943 30009040 -120774513 - L1ME2 LINE L1 -3379 2836 2749 2043 133 0 7 chr11 30009040 30009349 -120774204 - AluSx SINE Alu -4 308 2 980 265 134 46 chr11 30009349 30010316 -120773237 - L1ME2 LINE L1 -3466 2749 1759 1921 234 33 12 chr11 30010372 30010950 -120772603 - L1MCa LINE L1 -2442 3984 3395 1663 185 33 30 chr11 30010949 30011739 -120771814 - L1MCa LINE L1 -3727 2699 840 * 3708 193 27 60 chr11 30011767 30012616 -120770937 - L1MCa LINE L1 -5580 846 26 318 430 24 0 chr11 30012850 30013057 -120770496 - L1ME2 LINE L1 -6026 370 159 7489 33 0 0 chr11 30013301 30014655 -120768898 - L1PA3 LINE L1 0 6155 4803 28 29 0 0 chr11 30014944 30014979 -120768574 + AT_rich Low_complexity Low_complexity 1 35 0 363 305 89 47 chr11 30015065 30015301 -120768252 + L2 LINE L2 2363 2608 -706 211 342 45 18 chr11 30015689 30015800 -120767753 + L2 LINE L2 2673 2786 -528 336 263 0 0 chr11 30015808 30015888 -120767665 + Tigger5 DNA MER2_type 3 82 -2241 * 1268 164 84 0 chr11 30015876 30016102 -120767451 + Tigger5 DNA MER2_type 2079 2323 0 407 369 42 25 chr11 30016102 30016343 -120767210 + L2 LINE L2 2809 3053 -219 5420 131 38 4 chr11 30017185 30018453 -120765100 - L1PA15 LINE L1 0 6165 4882 416 261 46 23 chr11 30018875 30019005 -120764548 - L2 LINE L2 -1 3312 3180 1192 167 0 78 chr11 30019322 30019628 -120763925 - L1MA4 LINE L1 -16 6284 6003 267 283 58 25 chr11 30019996 30020116 -120763437 - L1ME LINE L1 -485 5636 5513 3641 205 38 11 chr11 30020162 30021170 -120762383 - L1MA10 LINE L1 0 6334 5127 910 171 20 20 chr11 30021174 30021373 -120762180 - L1MA10 LINE L1 -1740 4406 4208 24 0 0 0 chr11 30022878 30022902 -120760651 + AT_rich Low_complexity Low_complexity 1 24 0 2024 259 41 17 chr11 30023198 30023905 -120759648 + L1MC4a LINE L1 6880 7603 -205 889 280 92 38 chr11 30024318 30024764 -120758789 + L1ME3A LINE L1 5695 6164 -6 790 62 0 0 chr11 30024799 30024896 -120758657 - L1PA7 LINE L1 -561 5611 5515 3892 73 2 29 chr11 30024896 30025485 -120758068 + L1PA7 LINE L1 5606 6180 0 21 36 0 0 chr11 30025584 30025612 -120757941 + AT_rich Low_complexity Low_complexity 1 28 0 1699 182 3 0 chr11 30025888 30026185 -120757368 + AluJo SINE Alu 1 298 -14 750 259 80 5 chr11 30028060 30028261 -120755292 - MIR SINE MIR -1 261 46 2146 213 47 29 chr11 30028433 30028944 -120754609 + MLT2B1 LTR ERVL 1 520 0 419 323 78 18 chr11 30029014 30029231 -120754322 - L2 LINE L2 -3 3310 3081 263 295 38 0 chr11 30029278 30029383 -120754170 + L1MC/D LINE L1 5764 5872 -1936 374 330 138 25 chr11 30029656 30029859 -120753694 + L2 LINE L2 2874 3099 -214 508 265 82 71 chr11 30029971 30030239 -120753314 + MLT1J2 LTR MaLR 60 330 -120 22 35 0 0 chr11 30030839 30030868 -120752685 + AT_rich Low_complexity Low_complexity 1 29 0 283 415 37 0 chr11 30031036 30031200 -120752353 - L3 LINE CR1 -399 1178 1009 312 337 51 0 chr11 30031238 30031336 -120752217 + MIR SINE MIR 37 139 -123 241 393 73 10 chr11 30033026 30033232 -120750321 + MIR SINE MIR 12 230 -32 1463 196 28 70 chr11 30033280 30033758 -120749795 + MER39 LTR ERV1 1 707 0 193 278 111 40 chr11 30035309 30035435 -120748118 + MIR SINE MIR 65 199 -63 365 131 16 0 chr11 30035520 30035581 -120747972 - MADE1 DNA Mariner -3 77 16 205 275 165 9 chr11 30035611 30035720 -120747833 + MIR SINE MIR 131 256 -6 281 333 58 7 chr11 30036214 30036352 -120747201 - MIR SINE MIR -27 235 91 3189 301 79 19 chr11 30036537 30037631 -120745922 + L1MEc LINE L1 92 1314 -5082 468 0 0 0 chr11 30037631 30037683 -120745870 + (TG)n Simple_repeat Simple_repeat 2 53 0 3189 301 79 19 chr11 30037683 30038198 -120745355 + L1MEc LINE L1 1314 1797 -4599 194 189 0 19 chr11 30039466 30039519 -120744034 + (TATATG)n Simple_repeat Simple_repeat 4 55 0 736 185 104 28 chr11 30039751 30039962 -120743591 + MER33 DNA MER1_type 5 231 -93 277 128 0 0 chr11 30040083 30040122 -120743431 + 5S rRNA rRNA 4 42 -79 1209 216 52 29 chr11 30041269 30041617 -120741936 - MLT1C LTR MaLR -59 331 1 298 301 68 0 chr11 30041617 30041720 -120741833 - MER112 DNA MER1_type -124 136 27 361 308 108 15 chr11 30041727 30041987 -120741566 - L1MC/D LINE L1 -2151 5657 5374 465 208 35 0 chr11 30042029 30042202 -120741351 + (TA)n Simple_repeat Simple_repeat 2 180 0 11041 149 56 39 chr11 30042670 30043035 -120740518 + Tigger2 DNA MER2_type 1 358 -2360 1958 136 0 0 chr11 30043035 30043394 -120740159 + AluSg SINE Alu 1 359 0 11041 149 56 39 chr11 30043394 30045146 -120738407 + Tigger2 DNA MER2_type 358 2154 -564 3238 32 0 5 chr11 30045302 30045704 -120737849 - L1P LINE L1 -1316 4830 4431 * 3386 32 0 0 chr11 30045701 30046101 -120737452 + L1P LINE L1 4036 4435 -1711 431 229 80 96 chr11 30046254 30046442 -120737111 + L2 LINE L2 3126 3310 -3 23 0 0 0 chr11 30047124 30047147 -120736406 + AT_rich Low_complexity Low_complexity 1 23 0 228 86 0 0 chr11 30048246 30048281 -120735272 + (GA)n Simple_repeat Simple_repeat 1 35 0 610 241 127 6 chr11 30048552 30048710 -120734843 + MER45A DNA AcHobo 2 178 0 335 179 0 13 chr11 30048918 30048996 -120734557 + GA-rich Low_complexity Low_complexity 4 80 0 267 152 0 0 chr11 30049539 30049585 -120733968 + (TA)n Simple_repeat Simple_repeat 2 47 0 285 29 0 0 chr11 30050014 30050048 -120733505 + (TA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr11 30050094 30050115 -120733438 + AT_rich Low_complexity Low_complexity 1 21 0 2342 293 107 23 chr11 30050116 30050337 -120733216 + L1MEc LINE L1 39 240 -6156 4164 195 46 9 chr11 30050337 30051205 -120732348 + MER54A LTR ERVL 2 901 0 2342 293 107 23 chr11 30051205 30052242 -120731311 + L1MEc LINE L1 240 1403 -4993 1020 251 169 31 chr11 30052251 30052668 -120730885 + MLT2B1 LTR ERVL 1 486 -34 399 73 0 0 chr11 30052668 30052723 -120730830 + (CA)n Simple_repeat Simple_repeat 2 56 0 1020 251 169 31 chr11 30052723 30052756 -120730797 + MLT2B1 LTR ERVL 486 513 -7 958 281 74 5 chr11 30052756 30053133 -120730420 + L1MEc LINE L1 1409 1811 -4585 792 275 54 52 chr11 30054479 30054934 -120728619 + MLT1H1 LTR MaLR 5 509 -46 234 254 76 17 chr11 30055131 30055249 -120728304 + LTR37B LTR ERV1 74 198 -270 534 220 104 11 chr11 30055294 30055476 -120728077 + LTR37B LTR ERV1 197 395 -73 2140 151 48 38 chr11 30055639 30056178 -120727375 + MLT2A2 LTR ERVL 1 554 0 363 294 134 53 chr11 30056289 30056683 -120726870 - L1ME4a LINE L1 -203 5918 5493 349 202 0 19 chr11 30056917 30057021 -120726532 + (TA)n Simple_repeat Simple_repeat 1 102 0 238 261 0 0 chr11 30057250 30057296 -120726257 + polypurine Low_complexity Low_complexity 1 46 0 24 85 0 0 chr11 30057456 30057515 -120726038 + AT_rich Low_complexity Low_complexity 1 59 0 2642 78 14 0 chr11 30057600 30057961 -120725592 - L1PA13 LINE L1 -7 6156 5791 22 0 0 0 chr11 30058073 30058095 -120725458 + AT_rich Low_complexity Low_complexity 1 22 0 206 298 0 18 chr11 30060238 30060295 -120723258 - MIR SINE MIR -205 57 2 519 325 36 16 chr11 30060357 30060606 -120722947 + L1ME LINE L1 5539 5792 -329 2210 94 0 3 chr11 30060659 30060946 -120722607 + AluSq SINE Alu 1 286 -27 189 74 0 0 chr11 30060946 30060973 -120722580 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1360 154 38 8 chr11 30061104 30061370 -120722183 + L1MA9 LINE L1 6001 6274 -38 25 31 0 0 chr11 30061702 30061734 -120721819 + AT_rich Low_complexity Low_complexity 1 32 0 207 236 36 0 chr11 30062646 30062701 -120720852 + MIR SINE MIR 88 144 -64 183 61 30 30 chr11 30062873 30062906 -120720647 - MER5A DNA MER1_type -116 73 41 21 0 0 0 chr11 30063767 30063788 -120719765 + AT_rich Low_complexity Low_complexity 1 21 0 277 198 272 0 chr11 30064305 30064386 -120719167 + L2 LINE L2 3210 3312 -1 185 348 0 11 chr11 30065220 30065312 -120718241 - MIR SINE MIR 0 262 172 378 338 104 7 chr11 30065687 30065841 -120717712 - MIR SINE MIR -74 188 20 265 336 44 48 chr11 30065860 30066110 -120717443 - L3 LINE CR1 -34 1543 1295 339 130 0 0 chr11 30066127 30066181 -120717372 + (T)n Simple_repeat Simple_repeat 1 54 0 306 359 16 26 chr11 30066382 30066574 -120716979 + MLT1K LTR MaLR 125 314 -274 404 357 115 50 chr11 30066943 30067671 -120715882 - L3 LINE CR1 -572 1005 230 21 0 0 0 chr11 30067996 30068017 -120715536 + AT_rich Low_complexity Low_complexity 1 21 0 495 0 0 0 chr11 30068598 30068653 -120714900 + (TA)n Simple_repeat Simple_repeat 2 56 0 568 351 22 30 chr11 30069417 30069821 -120713732 + MLT1K LTR MaLR 188 588 0 1858 161 18 0 chr11 30070143 30070472 -120713081 - L1PB4 LINE L1 0 6156 5822 216 208 42 0 chr11 30070870 30070918 -120712635 + CT-rich Low_complexity Low_complexity 5 54 0 2366 44 0 93 chr11 30071511 30071854 -120711699 + AluY SINE Alu 1 311 0 276 261 170 18 chr11 30072919 30073084 -120710469 - L2 LINE L2 -19 3294 3105 271 385 81 0 chr11 30073179 30073327 -120710226 + L2 LINE L2 3100 3259 -13 955 113 0 0 chr11 30073531 30073655 -120709898 - AluY SINE Alu -187 124 1 413 233 9 60 chr11 30073860 30073976 -120709577 + MER81 DNA DNA 3 112 -2 424 279 88 19 chr11 30074842 30075057 -120708496 - L1ME4a LINE L1 -266 5855 5626 1039 271 81 48 chr11 30076055 30076261 -120707292 - MLT1H1 LTR MaLR -82 473 275 2386 118 22 3 chr11 30076261 30076618 -120706935 + THE1B LTR MaLR 1 364 0 1039 271 81 48 chr11 30076618 30076869 -120706684 - MLT1H1 LTR MaLR -280 275 1 273 348 19 62 chr11 30077060 30077221 -120706332 + MIR SINE MIR 34 147 -61 705 219 118 92 chr11 30077329 30077644 -120705909 - MER46C DNA MER2_type -15 323 1 391 314 66 7 chr11 30077839 30077976 -120705577 + MIR SINE MIR 108 252 -10 234 176 0 0 chr11 30077981 30078032 -120705521 + CT-rich Low_complexity Low_complexity 1 51 0 231 238 111 40 chr11 30078243 30078369 -120705184 - L2 LINE L2 -189 3083 2949 2097 107 0 7 chr11 30078783 30079081 -120704472 - AluSq SINE Alu -17 296 1 954 137 17 57 chr11 30079869 30080044 -120703509 + Tigger2a DNA MER2_type 4 171 -263 2046 171 72 0 chr11 30080053 30080440 -120703113 - Tigger2 DNA MER2_type -1 2717 2303 1664 89 69 82 chr11 30080463 30080766 -120702787 - AluY SINE Alu -10 301 3 805 231 5 41 chr11 30080798 30080993 -120702560 + AluJo SINE Alu 1 188 -124 211 305 8 34 chr11 30081105 30081223 -120702330 + A-rich Low_complexity Low_complexity 3 117 0 1985 122 28 0 chr11 30082273 30082587 -120700966 - AluSq SINE Alu 0 322 1 366 336 15 0 chr11 30082624 30082755 -120700798 - MIR SINE MIR -56 206 74 280 340 41 37 chr11 30083405 30083673 -120699880 - ERVL LTR ERVL -4342 1422 1154 379 304 0 16 chr11 30084905 30085030 -120698523 + MIR SINE MIR 84 206 -56 255 291 76 0 chr11 30085298 30085377 -120698176 + L2 LINE L2 3188 3272 0 2316 69 3 0 chr11 30085984 30086290 -120697263 - L1PA7 LINE L1 -1 6153 5847 3630 65 7 0 chr11 30086291 30086754 -120696799 + L1PA7 LINE L1 5365 5830 -324 329 401 84 12 chr11 30086793 30087127 -120696426 + L3 LINE CR1 5 362 -1215 29 0 0 0 chr11 30087753 30087782 -120695771 + AT_rich Low_complexity Low_complexity 1 29 0 427 194 0 32 chr11 30088438 30088531 -120695022 + MLT2B2 LTR ERVL 386 475 -40 375 408 73 35 chr11 30088643 30088984 -120694569 - L2 LINE L2 -341 2973 2620 281 26 0 26 chr11 30089132 30089171 -120694382 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 215 293 0 17 chr11 30091850 30091908 -120691645 + MIR SINE MIR 101 157 -105 564 289 45 20 chr11 30091915 30092116 -120691437 - MIR SINE MIR 0 262 57 277 337 122 0 chr11 30092117 30092215 -120691338 + MIR SINE MIR 153 262 0 332 177 114 0 chr11 30092854 30092933 -120690620 - LTR33 LTR ERVL 0 521 434 1088 296 61 58 chr11 30092953 30093415 -120690138 - LTR33 LTR ERVL -58 463 1 247 302 52 0 chr11 30093590 30093706 -120689847 - LTR67 LTR ERVL -2 555 434 531 315 44 1 chr11 30094410 30094591 -120688962 - MIR SINE MIR -41 221 36 490 157 0 0 chr11 30095660 30095743 -120687810 - L1MC3 LINE L1 -1 7784 7702 354 23 0 0 chr11 30096592 30096635 -120686918 + (TG)n Simple_repeat Simple_repeat 2 44 0 309 356 46 36 chr11 30096663 30096857 -120686696 - MIR SINE MIR -38 224 29 1968 128 0 20 chr11 30099486 30099791 -120683762 - AluSg SINE Alu -11 299 1 23 33 0 0 chr11 30100061 30100091 -120683462 + GC_rich Low_complexity Low_complexity 1 30 0 608 268 73 29 chr11 30100743 30100989 -120682564 - MLT1L LTR MaLR -2 613 357 245 186 0 43 chr11 30101972 30102042 -120681511 + T-rich Low_complexity Low_complexity 3 69 0 327 256 122 16 chr11 30102057 30102311 -120681242 + L1M4 LINE L1 2978 3258 -2888 186 189 0 0 chr11 30103289 30103326 -120680227 + (AACTG)n Simple_repeat Simple_repeat 4 40 0 379 319 25 6 chr11 30103724 30103884 -120679669 - MIR SINE MIR -27 235 73 694 262 45 41 chr11 30104420 30104641 -120678912 + MIR SINE MIR 31 252 -10 21 0 0 0 chr11 30106892 30106913 -120676640 + AT_rich Low_complexity Low_complexity 1 21 0 395 246 93 41 chr11 30106977 30107228 -120676325 - MLT1J LTR MaLR -233 217 1 367 305 48 18 chr11 30107254 30107421 -120676132 + L2 LINE L2 3115 3286 -27 1682 222 31 0 chr11 30107753 30108226 -120675327 - L1ME1 LINE L1 -5 6161 5539 2034 102 25 0 chr11 30108233 30108539 -120675014 - AluY SINE Alu 0 313 1 186 381 82 15 chr11 30108553 30108687 -120674866 + L2 LINE L2 2942 3084 -188 455 335 27 11 chr11 30109609 30109872 -120673681 - L1ME LINE L1 -359 5762 5496 748 297 13 17 chr11 30110772 30111008 -120672545 - MIR SINE MIR -3 259 25 323 167 19 0 chr11 30111149 30111203 -120672350 - MER45A DNA AcHobo 0 178 124 * 1356 295 64 102 chr11 30111199 30111856 -120671697 - MER45C DNA AcHobo -321 632 1 210 332 102 37 chr11 30111952 30112196 -120671357 + MIR SINE MIR 2 261 -1 242 149 0 45 chr11 30112319 30112386 -120671167 + L1MC4 LINE L1 6640 6703 -1339 231 221 0 53 chr11 30112420 30112515 -120671038 - L1MC4 LINE L1 -1339 6703 6614 278 167 17 0 chr11 30112516 30112576 -120670977 + (TA)n Simple_repeat Simple_repeat 1 61 0 521 325 95 9 chr11 30112576 30112807 -120670746 - MIR SINE MIR -11 251 1 239 261 140 70 chr11 30112816 30112973 -120670580 - MER5B DNA MER1_type -7 171 4 197 270 99 54 chr11 30112974 30113085 -120670468 + MER5B DNA MER1_type 15 130 -48 52 64 0 0 chr11 30113863 30113957 -120669596 + AT_rich Low_complexity Low_complexity 1 94 0 372 351 91 13 chr11 30114172 30114403 -120669150 + MIR SINE MIR 14 262 0 21 36 0 0 chr11 30117780 30117808 -120665745 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 30117908 30117931 -120665622 + AT_rich Low_complexity Low_complexity 1 23 0 214 369 94 28 chr11 30118207 30118559 -120664994 - L2 LINE L2 -694 2620 2246 307 313 49 49 chr11 30119101 30119245 -120664308 - MIR SINE MIR -70 192 49 180 200 50 0 chr11 30119328 30119368 -120664185 + MIR3 SINE MIR 165 206 -2 339 188 14 43 chr11 30120205 30120274 -120663279 + MER5A DNA MER1_type 48 114 -75 235 372 58 13 chr11 30120266 30120422 -120663131 + MIR SINE MIR 88 250 -12 * 1633 170 21 25 chr11 30120493 30120799 -120662754 + AluJb SINE Alu 1 305 0 210 208 0 0 chr11 30121490 30121543 -120662010 + (ATG)n Simple_repeat Simple_repeat 2 54 0 701 269 143 27 chr11 30121576 30121877 -120661676 + L2 LINE L2 2180 2515 -799 236 368 60 26 chr11 30122263 30122380 -120661173 - L2 LINE L2 -13 3259 3139 241 175 193 0 chr11 30123065 30123122 -120660431 - L2 LINE L2 -5 3308 3241 199 383 12 0 chr11 30123685 30123766 -120659787 - L2 LINE L2 0 3272 3191 330 363 83 21 chr11 30124990 30125230 -120658323 - MIR SINE MIR 0 262 8 286 342 100 0 chr11 30126167 30126287 -120657266 + L2 LINE L2 3141 3272 0 252 273 138 39 chr11 30126359 30126714 -120656839 - L1ME4a LINE L1 -3 6118 5729 723 127 83 104 chr11 30127589 30127827 -120655726 + AluJb SINE Alu 2 312 0 2571 206 34 8 chr11 30128220 30128723 -120654830 + MLT2B3 LTR ERVL 10 473 -47 313 167 12 12 chr11 30128724 30128808 -120654745 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 273 311 33 11 chr11 30129158 30129248 -120654305 + L2 LINE L2 3215 3306 -7 218 254 0 0 chr11 30130107 30130162 -120653391 + (CACCAT)n Simple_repeat Simple_repeat 5 59 0 3143 169 11 2 chr11 30130298 30130855 -120652698 + L1MA8 LINE L1 5547 6108 -183 192 97 0 0 chr11 30130968 30130999 -120652554 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr11 30131555 30131576 -120651977 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 30131707 30131728 -120651825 + AT_rich Low_complexity Low_complexity 1 21 0 824 134 21 14 chr11 30133498 30133640 -120649913 - MER4D LTR ERV1 0 903 761 3710 187 7 22 chr11 30133724 30134453 -120649100 - MER4D LTR ERV1 -179 724 7 320 388 27 27 chr11 30134546 30134770 -120648783 - L2 LINE L2 -243 3070 2847 387 246 76 17 chr11 30134775 30134893 -120648660 - MER94 DNA DNA -6 128 4 1030 333 134 19 chr11 30135547 30136172 -120647381 - L2 LINE L2 -509 2805 2109 246 287 41 107 chr11 30136268 30136390 -120647163 + MLT1K LTR MaLR 171 284 -304 1938 133 42 48 chr11 30136528 30136905 -120646648 - THE1C LTR MaLR 0 375 1 477 264 135 0 chr11 30136906 30137069 -120646484 + L2 LINE L2 3126 3310 -3 410 232 60 13 chr11 30139130 30139281 -120644272 + MER103 DNA DNA 9 166 0 180 321 0 18 chr11 30139577 30139633 -120643920 + L2 LINE L2 2980 3034 -238 379 278 80 46 chr11 30139637 30139788 -120643765 - MIR3 SINE MIR -3 205 50 588 350 71 43 chr11 30140603 30141140 -120642413 + L2 LINE L2 2245 2796 -518 2058 216 94 20 chr11 30141465 30141975 -120641578 - MER77 LTR ERV1 -9 596 49 302 367 50 0 chr11 30141995 30142115 -120641438 + L2 LINE L2 3146 3271 -1 3407 98 15 26 chr11 30142614 30143156 -120640397 - L1PA8A LINE L1 -1 6130 5595 294 286 0 0 chr11 30143161 30143266 -120640287 + C-rich Low_complexity Low_complexity 1 105 0 571 279 89 0 chr11 30143444 30143634 -120639919 - MER63A DNA MER1_type -3 207 1 1938 97 54 0 chr11 30144202 30144461 -120639092 + AluSg SINE Alu 20 292 -18 4326 187 20 25 chr11 30144971 30145866 -120637687 + L1P LINE L1 4202 5093 -1053 2052 138 51 25 chr11 30145866 30146221 -120637332 - THE1B LTR MaLR 0 364 1 4326 187 20 25 chr11 30146221 30146314 -120637239 + L1P LINE L1 5093 5185 -961 216 67 0 0 chr11 30146747 30146777 -120636776 + (CA)n Simple_repeat Simple_repeat 1 30 0 1505 188 4 4 chr11 30148020 30148286 -120635267 - AluSx SINE Alu -46 266 1 409 212 34 24 chr11 30149468 30149589 -120633964 - AluS SINE Alu -208 95 1 3409 190 24 5 chr11 30149591 30150229 -120633324 - THE1B-int LTR MaLR -304 1347 698 309 321 52 72 chr11 30150815 30151105 -120632448 - L2 LINE L2 -765 2549 2266 699 43 0 43 chr11 30153398 30153492 -120630061 + LTR13 LTR ERVK 1 90 -917 874 289 79 19 chr11 30153818 30154234 -120629319 - Tigger8 DNA MER2_type -187 479 39 934 165 41 16 chr11 30155151 30155345 -120628208 + L1MA9 LINE L1 5828 6026 -286 7101 111 16 6 chr11 30155626 30157290 -120626263 - L1PA8A LINE L1 -220 5911 4239 6665 209 23 35 chr11 30157391 30159215 -120624338 - L1P4 LINE L1 -727 5438 3612 2052 173 84 0 chr11 30159840 30160233 -120623320 + MSTB LTR MaLR 1 426 0 224 268 187 43 chr11 30160874 30161109 -120622444 + L2 LINE L2 2487 2755 -559 200 347 32 0 chr11 30161218 30161313 -120622240 + L2 LINE L2 2180 2277 -1037 1094 278 88 25 chr11 30161410 30161981 -120621572 + L2 LINE L2 2710 3313 0 223 342 34 26 chr11 30161998 30162115 -120621438 + L2 LINE L2 2870 2987 -285 336 263 138 67 chr11 30163056 30163280 -120620273 + L1M4 LINE L1 4017 4256 -1890 577 202 23 52 chr11 30163427 30163600 -120619953 - L1ME LINE L1 -654 5788 5621 294 344 54 40 chr11 30163993 30164342 -120619211 - ERVL LTR ERVL -5070 694 341 482 258 54 16 chr11 30164534 30164720 -120618833 + MLT1F1 LTR MaLR 1 193 -374 1999 288 95 48 chr11 30164756 30165831 -120617722 - L1MCc LINE L1 -5134 1289 165 27 29 0 0 chr11 30165831 30165865 -120617688 + AT_rich Low_complexity Low_complexity 1 34 0 246 352 11 0 chr11 30165955 30166046 -120617507 - L3 LINE CR1 -24 1553 1462 7211 198 48 29 chr11 30166049 30167231 -120616322 - L1MC3 LINE L1 -2 7783 6556 291 54 0 0 chr11 30167231 30167268 -120616285 + (TA)n Simple_repeat Simple_repeat 1 37 0 7211 198 48 29 chr11 30167268 30167830 -120615723 - L1MC3 LINE L1 -1229 6556 6006 544 207 115 42 chr11 30167848 30168065 -120615488 - L1ME LINE L1 -2097 4329 4097 2456 252 42 19 chr11 30168071 30169309 -120614244 - L1MCa LINE L1 -3113 3313 2049 25 0 0 0 chr11 30169393 30169418 -120614135 + AT_rich Low_complexity Low_complexity 1 25 0 961 211 144 20 chr11 30169418 30169699 -120613854 - MLT1A1 LTR MaLR -48 326 1 468 317 34 6 chr11 30169701 30169879 -120613674 - MIR SINE MIR -62 146 5 1865 148 16 0 chr11 30169896 30170201 -120613352 - Tigger2 DNA MER2_type 0 2718 2409 1393 13 0 0 chr11 30170215 30170374 -120613179 - L1HS LINE L1 0 6155 5997 * 4669 15 2 0 chr11 30170373 30170910 -120612643 + L1HS LINE L1 5480 6017 -138 707 295 40 0 chr11 30171050 30171250 -120612303 + MER58A DNA MER1_type 2 209 -15 660 193 75 37 chr11 30171270 30171457 -120612096 + MLT1F LTR MaLR 338 531 -11 453 278 153 91 chr11 30171598 30172214 -120611339 - LTR50 LTR ERVL 0 795 142 2155 126 0 10 chr11 30172214 30172524 -120611029 - AluSq SINE Alu -6 307 1 752 211 0 7 chr11 30172817 30172964 -120610589 + FRAM SINE Alu 28 173 -3 4572 170 17 14 chr11 30173423 30175071 -120608482 + L1MA8 LINE L1 4461 6260 -31 29 60 0 0 chr11 30175122 30175172 -120608381 + AT_rich Low_complexity Low_complexity 1 50 0 955 105 0 0 chr11 30175252 30175385 -120608168 - THE1C LTR MaLR -1 374 242 2348 146 15 33 chr11 30175385 30175966 -120607587 - L1MA8 LINE L1 -118 6173 5455 1242 128 20 0 chr11 30175970 30176165 -120607388 - THE1C LTR MaLR -176 199 1 213 385 33 0 chr11 30176165 30176256 -120607297 - L2 LINE L2 -45 3227 3134 637 176 118 6 chr11 30176288 30176458 -120607095 + MER53 DNA DNA 1 189 0 548 340 43 13 chr11 30177157 30177389 -120606164 - MIR SINE MIR -14 248 10 496 279 221 0 chr11 30177425 30177597 -120605956 - MIR SINE MIR -41 221 12 272 297 81 36 chr11 30177606 30177717 -120605836 - MIR SINE MIR -57 151 36 347 318 34 0 chr11 30178182 30178330 -120605223 - MER103 DNA DNA -3 163 11 299 244 26 0 chr11 30178463 30178541 -120605012 - MER5A DNA MER1_type -83 106 27 224 268 103 21 chr11 30178960 30179057 -120604496 - MIR SINE MIR -74 188 84 2616 233 52 10 chr11 30179416 30180210 -120603343 + L1MD2 LINE L1 4034 4860 -1286 3161 201 46 48 chr11 30180224 30181094 -120602459 - L1MB7 LINE L1 0 6184 5317 246 32 0 0 chr11 30181133 30181164 -120602389 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7829 16 0 0 chr11 30181180 30182745 -120600808 - L1PA2 LINE L1 0 6155 4591 6451 31 0 0 chr11 30182745 30183524 -120600029 + L1P LINE L1 1786 2564 -3582 1218 215 56 20 chr11 30183523 30183914 -120599639 - L1MB7 LINE L1 -815 5331 4927 * 4313 224 48 21 chr11 30183951 30185378 -120598175 + L1MD2 LINE L1 4893 6359 0 508 339 16 5 chr11 30185551 30185737 -120597816 + L2 LINE L2 2658 2845 -469 1421 285 71 32 chr11 30185755 30186279 -120597274 - MLT1E LTR MaLR -2 591 36 249 243 57 14 chr11 30186662 30186732 -120596821 - MIR SINE MIR -111 151 79 325 329 19 7 chr11 30187016 30187121 -120596432 + GA-rich Low_complexity Low_complexity 2 111 -47 1728 150 32 42 chr11 30187121 30187500 -120596053 + THE1C LTR MaLR 1 375 0 325 329 19 7 chr11 30187500 30187549 -120596004 + GA-rich Low_complexity Low_complexity 111 158 0 377 295 50 14 chr11 30187765 30187904 -120595649 - MIR SINE MIR -56 206 63 489 314 40 45 chr11 30189001 30189224 -120594329 + MIR SINE MIR 21 242 -20 654 251 66 43 chr11 30189602 30189813 -120593740 + MER20 DNA MER1_type 4 219 0 303 291 73 0 chr11 30189918 30190028 -120593525 + L3b LINE CR1 1267 1384 -199 746 118 83 104 chr11 30190321 30190559 -120592994 - AluJb SINE Alu 0 312 2 267 290 130 31 chr11 30191435 30191790 -120591763 + L1ME4a LINE L1 5729 6118 -3 302 333 100 0 chr11 30191862 30191982 -120591571 - L2 LINE L2 0 3272 3141 347 363 83 21 chr11 30192919 30193159 -120590394 + MIR SINE MIR 8 262 0 199 383 12 0 chr11 30194383 30194464 -120589089 + L2 LINE L2 3191 3272 0 242 175 193 0 chr11 30195025 30195082 -120588471 + L2 LINE L2 3241 3308 -5 239 368 60 26 chr11 30195767 30195884 -120587669 + L2 LINE L2 3139 3259 -13 713 269 143 27 chr11 30196270 30196571 -120586982 - L2 LINE L2 -799 2515 2180 210 208 0 0 chr11 30196604 30196657 -120586896 + (CAT)n Simple_repeat Simple_repeat 2 54 0 2166 154 30 43 chr11 30197228 30197639 -120585914 + L1MA9 LINE L1 5858 6264 -48 1889 198 3 0 chr11 30197639 30197982 -120585571 - MER7A DNA MER2_type 0 346 5 2166 154 30 43 chr11 30197982 30198031 -120585522 + L1MA9 LINE L1 6264 6312 0 21 0 0 0 chr11 30199135 30199156 -120584397 + AT_rich Low_complexity Low_complexity 1 21 0 197 309 73 0 chr11 30199557 30199612 -120583941 - L2 LINE L2 -48 3224 3166 6341 31 0 0 chr11 30200040 30200789 -120582764 - L1PA4 LINE L1 -6 6149 5401 5268 29 2 0 chr11 30200786 30201413 -120582140 + L1P LINE L1 3587 4214 -1932 * 289 359 47 9 chr11 30201707 30201813 -120581740 - L2 LINE L2 -9 3304 3195 642 61 0 0 chr11 30201935 30202017 -120581536 - L1PA5 LINE L1 -163 5991 5910 266 73 0 0 chr11 30202012 30202053 -120581500 + L1PA6 LINE L1 6114 6154 0 * 23 68 0 0 chr11 30202068 30202112 -120581441 + AT_rich Low_complexity Low_complexity 1 44 0 252 0 0 0 chr11 30202544 30202572 -120580981 + (TG)n Simple_repeat Simple_repeat 2 29 0 332 354 31 0 chr11 30202765 30202895 -120580658 - MER94 DNA DNA 0 134 1 397 267 35 43 chr11 30203306 30203422 -120580131 + MIR SINE MIR 35 149 -59 229 349 0 0 chr11 30203965 30204048 -120579505 - MIR SINE MIR -109 153 71 257 382 14 14 chr11 30204556 30204700 -120578853 + MIR3 SINE MIR 65 208 0 298 355 95 12 chr11 30205051 30205293 -120578260 - MLT1K LTR MaLR -166 422 161 480 251 153 18 chr11 30205417 30205580 -120577973 + L2 LINE L2 3108 3292 -21 206 333 107 38 chr11 30205582 30205741 -120577812 - MIR SINE MIR -86 176 7 181 295 27 87 chr11 30205772 30205921 -120577632 + MIR SINE MIR 66 205 -57 180 206 0 0 chr11 30208024 30208058 -120575495 + L2 LINE L2 3183 3216 -56 961 71 0 0 chr11 30209950 30210077 -120573476 + AluY SINE Alu 185 311 0 232 176 231 33 chr11 30210433 30210524 -120573029 + MIR SINE MIR 98 206 -56 294 312 128 0 chr11 30211001 30211142 -120572411 + MIR SINE MIR 46 204 -58 225 154 0 0 chr11 30211142 30211181 -120572372 + (CA)n Simple_repeat Simple_repeat 1 39 0 2198 126 0 3 chr11 30211974 30212284 -120571269 - AluSq SINE Alu -4 309 1 359 290 37 37 chr11 30212380 30212542 -120571011 + MIR SINE MIR 47 208 -54 188 293 60 43 chr11 30212983 30213099 -120570454 + L2 LINE L2 2925 3042 -230 406 285 38 19 chr11 30213514 30213672 -120569881 + MLT1J LTR MaLR 313 473 -38 393 369 124 9 chr11 30213954 30214285 -120569268 + L2 LINE L2 2945 3313 0 242 116 23 0 chr11 30214285 30214328 -120569225 + GA-rich Low_complexity Low_complexity 3 46 0 1512 278 129 30 chr11 30214978 30215482 -120568071 + L2 LINE L2 1958 2410 -904 13553 133 32 39 chr11 30215482 30215818 -120567735 + Tigger1 DNA MER2_type 2 339 -2079 207 0 0 0 chr11 30215818 30215841 -120567712 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 13553 133 32 39 chr11 30215841 30217305 -120566248 + Tigger1 DNA MER2_type 339 1783 -635 2032 138 3 0 chr11 30217305 30217602 -120565951 - AluSx SINE Alu -12 300 3 13553 133 32 39 chr11 30217602 30218234 -120565319 + Tigger1 DNA MER2_type 1783 2418 0 1512 278 129 30 chr11 30218234 30218402 -120565151 + L2 LINE L2 2410 2697 -617 995 262 88 94 chr11 30218460 30218588 -120564965 + L2 LINE L2 2579 2706 -607 786 232 6 17 chr11 30218588 30218765 -120564788 - FAM SINE Alu 0 175 1 995 262 88 94 chr11 30218765 30219382 -120564171 + L2 LINE L2 2706 3311 -2 3442 206 68 28 chr11 30219580 30220397 -120563156 - MER21B LTR ERV1 -1 862 13 21 57 0 0 chr11 30220477 30220512 -120563041 + AT_rich Low_complexity Low_complexity 1 35 0 703 189 16 0 chr11 30220591 30220718 -120562835 + AluJo SINE Alu 1 129 -183 239 67 50 17 chr11 30220720 30220780 -120562773 + (TA)n Simple_repeat Simple_repeat 2 63 0 974 221 0 0 chr11 30220784 30220965 -120562588 + AluJo SINE Alu 132 312 0 360 307 126 12 chr11 30220965 30221219 -120562334 + L1ME LINE L1 4407 4689 -1457 327 292 153 14 chr11 30221649 30221865 -120561688 + L1ME LINE L1 5260 5505 -657 658 349 84 8 chr11 30222817 30223198 -120560355 - L2 LINE L2 0 3313 2904 256 278 21 21 chr11 30223328 30223425 -120560128 - L2 LINE L2 -420 2894 2798 21 0 0 0 chr11 30224420 30224441 -120559112 + AT_rich Low_complexity Low_complexity 1 21 0 481 308 54 58 chr11 30224910 30225332 -120558221 + MLT1I LTR MaLR 1 409 0 405 0 0 0 chr11 30226870 30226915 -120556638 + (TC)n Simple_repeat Simple_repeat 2 46 0 288 0 0 0 chr11 30226914 30226946 -120556607 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 397 370 114 30 chr11 30227173 30227435 -120556118 + L2 LINE L2 2987 3270 -2 323 327 75 38 chr11 30227541 30227859 -120555694 + L2 LINE L2 2921 3250 -63 465 149 64 53 chr11 30228106 30228200 -120555353 - LTR65 LTR ERV1 -274 395 301 187 324 38 48 chr11 30228707 30228812 -120554741 + MIR SINE MIR 41 144 -118 487 222 97 40 chr11 30228828 30229004 -120554549 + MIR SINE MIR 3 188 -74 180 0 0 0 chr11 30229034 30229054 -120554499 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 189 0 0 0 chr11 30229053 30229074 -120554479 + (GA)n Simple_repeat Simple_repeat 2 22 0 240 356 30 20 chr11 30229607 30229708 -120553845 + MIR3 SINE MIR 93 194 -14 1632 145 55 3 chr11 30229789 30230079 -120553474 - MER7A DNA MER2_type -42 304 2 243 0 0 0 chr11 30230372 30230399 -120553154 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 306 317 25 8 chr11 30230986 30231106 -120552447 + MIR SINE MIR 101 222 -40 362 274 33 24 chr11 30232198 30232339 -120551214 - MIR SINE MIR -62 146 10 195 298 18 18 chr11 30232482 30232539 -120551014 - L2 LINE L2 -18 3295 3239 244 385 19 19 chr11 30234394 30234498 -120549055 + L2 LINE L2 3128 3231 -41 1881 169 0 3 chr11 30234948 30235279 -120548274 + L1MA7 LINE L1 5460 5789 -502 21 0 0 0 chr11 30235279 30235300 -120548253 + AT_rich Low_complexity Low_complexity 1 21 0 2098 173 60 31 chr11 30235408 30235895 -120547658 + L1MA7 LINE L1 5787 6287 -4 1212 190 0 0 chr11 30235899 30236094 -120547459 + AluSx SINE Alu 1 195 -117 310 345 59 8 chr11 30236334 30236453 -120547100 - MIR SINE MIR -115 147 23 2350 97 0 0 chr11 30237678 30237976 -120545577 - AluSg SINE Alu -12 298 1 290 122 27 135 chr11 30238120 30238194 -120545359 - MER116 DNA Mariner -10 70 5 279 0 0 0 chr11 30239221 30239252 -120544301 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 435 328 166 39 chr11 30239278 30239773 -120543780 - L2 LINE L2 -61 3252 2660 2480 54 0 3 chr11 30239773 30240069 -120543484 + AluY SINE Alu 1 295 -16 435 328 166 39 chr11 30240069 30240152 -120543401 - L2 LINE L2 -653 2660 2589 835 243 21 21 chr11 30242066 30242255 -120541298 - MER5A DNA MER1_type 0 189 1 2008 137 0 0 chr11 30245604 30245888 -120537665 - AluSx SINE Alu -28 284 1 1410 199 16 58 chr11 30247129 30247577 -120535976 - MER67D LTR ERV1 -4 510 3 337 313 134 34 chr11 30247834 30248013 -120535540 + MIR SINE MIR 54 250 -12 663 283 40 6 chr11 30249389 30249566 -120533987 + MIR SINE MIR 24 206 -56 517 146 39 10 chr11 30249959 30250062 -120533491 + MLT2B1 LTR ERVL 1 106 -414 375 191 9 19 chr11 30250066 30250171 -120533382 + (TA)n Simple_repeat Simple_repeat 2 105 0 204 40 0 0 chr11 30250171 30250196 -120533357 + (GA)n Simple_repeat Simple_repeat 2 26 0 330 148 0 0 chr11 30250200 30250254 -120533299 + MLT2B1 LTR ERVL 467 520 0 2972 109 12 0 chr11 30250628 30251051 -120532502 - MSTA LTR MaLR 0 428 1 2574 122 0 11 chr11 30251616 30251984 -120531569 - THE1B LTR MaLR 0 364 1 1481 193 15 4 chr11 30253376 30253641 -120529912 - MLT1A1 LTR MaLR 0 365 98 273 29 0 0 chr11 30253852 30253886 -120529667 + (TA)n Simple_repeat Simple_repeat 2 35 0 384 331 39 8 chr11 30254263 30254393 -120529160 - MIR SINE MIR -97 165 32 184 304 0 0 chr11 30254912 30254958 -120528595 + MIR SINE MIR 74 119 -89 410 286 6 10 chr11 30255408 30255539 -120528014 - MIR SINE MIR -63 145 22 314 346 0 10 chr11 30256269 30256370 -120527183 - MIR SINE MIR -6 256 157 515 311 97 15 chr11 30256406 30256612 -120526941 - MIR SINE MIR -14 248 26 180 0 0 0 chr11 30256731 30256751 -120526802 + (TA)n Simple_repeat Simple_repeat 2 21 0 1840 159 121 21 chr11 30256890 30257279 -120526274 + MSTA LTR MaLR 1 428 0 427 324 34 21 chr11 30257325 30257563 -120525990 - L1ME LINE L1 -369 5752 5512 623 195 8 0 chr11 30257571 30257689 -120525864 + MLT1A1 LTR MaLR 247 365 0 243 287 106 11 chr11 30258251 30258345 -120525208 - MER103 DNA DNA -57 109 7 1536 120 28 0 chr11 30258680 30258930 -120524623 + L1MA8 LINE L1 6024 6280 -11 849 138 0 36 chr11 30259293 30259431 -120524122 + FLAM_C SINE Alu 1 133 -10 21 82 0 0 chr11 30259575 30259624 -120523929 + AT_rich Low_complexity Low_complexity 1 49 0 332 277 10 40 chr11 30260484 30260585 -120522968 + MIR SINE MIR 71 168 -94 274 302 174 5 chr11 30261403 30261615 -120521938 + L1ME LINE L1 5566 5813 -308 874 312 58 11 chr11 30263129 30263488 -120520065 - L2 LINE L2 0 3313 2938 212 329 91 49 chr11 30264268 30264411 -120519142 - L2 LINE L2 0 3313 3165 365 287 63 21 chr11 30264426 30264569 -120518984 + MIR SINE MIR 104 252 -10 780 203 26 42 chr11 30264610 30264802 -120518751 - MER5A DNA MER1_type 0 189 1 223 382 114 32 chr11 30265092 30265215 -120518338 + L2 LINE L2 3129 3261 -11 802 243 29 0 chr11 30265583 30265756 -120517797 + MER45A DNA AcHobo 1 178 0 189 343 162 0 chr11 30265862 30265967 -120517586 + MIR3 SINE MIR 82 203 -5 309 301 146 50 chr11 30267070 30267269 -120516284 - MIR SINE MIR -41 221 4 16296 53 3 2 chr11 30267674 30270530 -120513023 - L1PA5 LINE L1 -1 6153 3302 485 202 11 0 chr11 30270669 30270763 -120512790 + LTR67 LTR ERVL 449 543 -14 303 295 116 48 chr11 30271385 30271636 -120511917 + L2 LINE L2 2597 2864 -450 34 24 0 0 chr11 30272134 30272175 -120511378 + AT_rich Low_complexity Low_complexity 1 41 0 342 335 40 23 chr11 30272211 30272387 -120511166 - MIR SINE MIR -71 191 13 1104 191 48 75 chr11 30272447 30272819 -120510734 - L1MB8 LINE L1 0 6178 5817 545 275 41 17 chr11 30273096 30273425 -120510128 + MER115 DNA AcHobo 316 692 -1 7212 40 2 10 chr11 30274389 30275291 -120508262 - L1PA5 LINE L1 -1 6153 5259 215 158 0 26 chr11 30275376 30275414 -120508139 - MIR SINE MIR -147 115 79 281 230 109 52 chr11 30276664 30276824 -120506729 - MIR3 SINE MIR -59 149 3 423 232 18 9 chr11 30276907 30277019 -120506534 - MER117 DNA MER1_type -84 113 1 492 227 0 0 chr11 30277373 30277492 -120506061 + GA-rich Low_complexity Low_complexity 1 119 0 315 303 103 50 chr11 30277500 30277761 -120505792 + L2 LINE L2 3038 3312 -1 198 353 86 17 chr11 30278301 30278417 -120505136 + MIR SINE MIR 20 143 -119 28 0 0 0 chr11 30279852 30279880 -120503673 + AT_rich Low_complexity Low_complexity 1 28 0 531 216 0 0 chr11 30280853 30280955 -120502598 + MER7A DNA MER2_type 2 101 -245 23110 42 1 3 chr11 30280955 30284636 -120498917 - L1PA4 LINE L1 -3 6152 2471 1492 216 37 58 chr11 30284636 30285151 -120498402 - L1M4 LINE L1 -1320 5637 5134 2579 271 93 46 chr11 30285170 30287414 -120496139 - L1M4 LINE L1 -3853 3104 742 375 291 91 17 chr11 30287408 30287583 -120495970 - L1M4 LINE L1 -6670 189 2 * 200 143 65 26 chr11 30287635 30287712 -120495841 + (TA)n Simple_repeat Simple_repeat 1 80 0 24 96 0 0 chr11 30287742 30287815 -120495738 + AT_rich Low_complexity Low_complexity 1 73 0 399 299 87 68 chr11 30287816 30288451 -120495102 - L1MEc LINE L1 -1708 4507 3861 449 208 0 104 chr11 30288691 30288835 -120494718 - L2 LINE L2 -1270 2044 1916 548 315 112 70 chr11 30288871 30289344 -120494209 + L2 LINE L2 2003 2495 -819 474 301 132 25 chr11 30289398 30289793 -120493760 - L1MEc LINE L1 -2887 3328 2892 2404 80 0 0 chr11 30291279 30291590 -120491963 - AluY SINE Alu 0 311 1 4629 32 0 0 chr11 30291604 30292157 -120491396 + L1PA4 LINE L1 5603 6155 0 21 36 0 0 chr11 30292520 30292548 -120491005 + AT_rich Low_complexity Low_complexity 1 28 0 545 261 92 19 chr11 30292588 30292795 -120490758 + MIR SINE MIR 37 258 -4 300 336 18 0 chr11 30293043 30293156 -120490397 - MIR3 SINE MIR -7 201 87 703 211 77 5 chr11 30293223 30293417 -120490136 - L1MC3 LINE L1 -18 7767 7560 1881 259 137 7 chr11 30293510 30294240 -120489313 + L1M4c LINE L1 969 1793 -4591 200 216 0 0 chr11 30294307 30294344 -120489209 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 2161 217 42 6 chr11 30294345 30294848 -120488705 + L1MB7 LINE L1 5644 6164 -20 1081 230 73 14 chr11 30294917 30295274 -120488279 + L1ME2 LINE L1 5768 6145 -19 26 50 0 0 chr11 30295894 30295934 -120487619 + AT_rich Low_complexity Low_complexity 1 40 0 273 349 46 9 chr11 30295970 30296079 -120487474 - MIR SINE MIR -139 123 11 211 392 7 28 chr11 30296103 30296246 -120487307 - MIR3 SINE MIR -62 146 7 249 305 12 0 chr11 30296723 30296805 -120486748 + MIR SINE MIR 172 254 -8 9213 28 2 0 chr11 30296982 30298848 -120484705 - L1PA4 LINE L1 -3 6152 4285 40 49 0 0 chr11 30299235 30299296 -120484257 + AT_rich Low_complexity Low_complexity 1 61 0 215 110 93 17 chr11 30299408 30299526 -120484027 + (TA)n Simple_repeat Simple_repeat 2 128 0 411 222 11 11 chr11 30299558 30299738 -120483815 + (TA)n Simple_repeat Simple_repeat 1 180 0 483 253 82 0 chr11 30299926 30300096 -120483457 - L1MEc LINE L1 -3641 2574 2391 1843 240 125 15 chr11 30300122 30300642 -120482911 + MLT1E1 LTR MaLR 58 634 -20 313 282 54 54 chr11 30300661 30300902 -120482651 - L1MEc LINE L1 -3816 2399 2183 230 314 117 38 chr11 30300991 30301463 -120482090 - L1MEc LINE L1 -4542 1854 1346 3554 133 11 0 chr11 30301597 30302155 -120481398 - L1PA16 LINE L1 -9 6157 5594 230 272 148 0 chr11 30302410 30302491 -120481062 - L2 LINE L2 0 3313 3221 22 35 0 0 chr11 30302863 30302892 -120480661 + AT_rich Low_complexity Low_complexity 1 29 0 295 282 128 8 chr11 30303101 30303218 -120480335 - MIR SINE MIR -59 203 73 550 191 25 157 chr11 30303306 30303541 -120480012 - L2 LINE L2 0 3313 3110 1973 186 3 19 chr11 30304726 30305097 -120478456 - MLT1A1 LTR MaLR 0 365 1 1477 109 19 0 chr11 30305421 30305632 -120477921 + L1PA10 LINE L1 5938 6152 -16 1204 197 119 44 chr11 30306198 30306559 -120476994 - MER89 LTR ERV1 0 559 172 278 262 24 0 chr11 30306899 30306983 -120476570 + CT-rich Low_complexity Low_complexity 1 86 0 388 302 195 54 chr11 30308928 30309451 -120474102 + L2 LINE L2 2681 3291 -22 824 200 19 12 chr11 30309451 30309611 -120473942 - Tigger3(Golem) DNA MER2_type 0 3029 2869 292 160 0 0 chr11 30309606 30309656 -120473897 - Tigger3(Golem) DNA MER2_type -99 2930 2881 * 367 97 0 97 chr11 30309659 30309731 -120473822 - Tigger3(Golem) DNA MER2_type -96 2933 2869 350 111 0 97 chr11 30309749 30309821 -120473732 - Tigger3(Golem) DNA MER2_type -96 2933 2869 318 200 0 31 chr11 30309816 30309881 -120473672 - Tigger3(Golem) DNA MER2_type -89 2940 2878 * 301 152 25 89 chr11 30309863 30309942 -120473611 - Tigger3(Golem) DNA MER2_type -79 2950 2877 * 345 162 0 86 chr11 30309935 30310073 -120473480 - Tigger3(Golem) DNA MER2_type -75 2954 2868 312 171 0 92 chr11 30310075 30310151 -120473402 - Tigger3(Golem) DNA MER2_type -93 2936 2868 * 391 94 71 82 chr11 30310148 30310233 -120473320 - Tigger3(Golem) DNA MER2_type -77 2952 2869 247 185 93 0 chr11 30310248 30310302 -120473251 - Tigger3(Golem) DNA MER2_type -83 2946 2888 303 189 24 52 chr11 30310302 30310427 -120473126 - Tigger3(Golem) DNA MER2_type -88 2941 2844 278 139 0 0 chr11 30310464 30310507 -120473046 - Tigger3(Golem) DNA MER2_type -107 2922 2880 898 108 89 32 chr11 30310533 30310691 -120472862 - Tigger3(Golem) DNA MER2_type -91 2938 2772 19611 39 6 0 chr11 30310691 30313883 -120469670 + L1PA4 LINE L1 2954 6152 -3 270 206 0 32 chr11 30313901 30313964 -120469589 + L1M4 LINE L1 4810 4870 -1276 1270 195 49 21 chr11 30313971 30314403 -120469150 + L1M4 LINE L1 5104 5555 -619 301 381 44 11 chr11 30314514 30314695 -120468858 - L2 LINE L2 -229 3043 2857 260 75 75 0 chr11 30315382 30315435 -120468118 - LTR66 LTR ERVL -160 450 394 22 88 0 0 chr11 30315449 30315506 -120468047 + AT_rich Low_complexity Low_complexity 1 57 0 342 243 29 0 chr11 30315555 30315695 -120467858 + (TA)n Simple_repeat Simple_repeat 2 145 0 187 343 0 29 chr11 30316734 30316804 -120466749 + MIR SINE MIR 23 90 -118 638 276 133 55 chr11 30317365 30317749 -120465804 - MLT1J1 LTR MaLR 0 446 33 241 356 0 0 chr11 30317775 30317865 -120465688 - MIR SINE MIR -72 190 101 186 246 0 66 chr11 30318400 30318461 -120465092 - L2 LINE L2 -75 3197 3141 1951 242 36 62 chr11 30319344 30320118 -120463435 - L1ME1 LINE L1 -5 6230 5477 302 0 26 0 chr11 30320133 30320171 -120463382 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 353 239 28 9 chr11 30320175 30320284 -120463269 + L1MA10 LINE L1 6224 6334 0 2626 251 79 14 chr11 30320338 30321316 -120462237 - L1ME1 LINE L1 -1318 4897 3857 304 283 42 30 chr11 30321321 30321487 -120462066 - L1ME1 LINE L1 -2647 3568 3401 * 2879 230 83 41 chr11 30321484 30322461 -120461092 - L1MD2 LINE L1 -4 6355 5338 2287 260 34 26 chr11 30322601 30323440 -120460113 - L1ME1 LINE L1 -2994 3221 2373 252 86 0 0 chr11 30323440 30323475 -120460078 + (TG)n Simple_repeat Simple_repeat 2 36 0 2287 260 34 26 chr11 30323475 30323516 -120460037 - L1ME1 LINE L1 -3842 2373 2334 1878 99 7 7 chr11 30323565 30323837 -120459716 - AluSc SINE Alu -1 308 37 1353 145 45 22 chr11 30323881 30324150 -120459403 - L1MC2 LINE L1 -4 6340 6066 557 142 198 68 chr11 30324170 30324419 -120459134 - MER4C LTR ERV1 -20 445 157 1477 156 53 47 chr11 30324429 30324768 -120458785 - MER4A LTR ERV1 -323 341 1 1722 171 23 11 chr11 30324770 30325121 -120458432 - L1MC2 LINE L1 -287 6057 5703 1674 276 92 49 chr11 30325137 30325780 -120457773 - L1ME1 LINE L1 -4102 2294 1680 1780 126 79 7 chr11 30325780 30326057 -120457496 - AluSg SINE Alu -13 297 1 1674 276 92 49 chr11 30326057 30326798 -120456755 - L1ME1 LINE L1 -4716 1680 850 647 189 0 0 chr11 30326953 30327059 -120456494 + Tigger3(Golem) DNA MER2_type 2920 3025 -4 716 302 76 44 chr11 30327064 30327471 -120456082 - L1ME1 LINE L1 -5900 496 77 297 128 0 0 chr11 30327473 30327520 -120456033 + (TA)n Simple_repeat Simple_repeat 2 48 0 4154 68 0 2 chr11 30327527 30328059 -120455494 - L1PA7 LINE L1 -61 6093 5563 22 35 0 0 chr11 30328103 30328132 -120455421 + AT_rich Low_complexity Low_complexity 1 29 0 769 52 0 0 chr11 30328279 30328376 -120455177 + L1PA3 LINE L1 2 98 -6048 * 37308 37 25 1 chr11 30328345 30333782 -120449771 + L1PA3 LINE L1 580 6150 -5 1573 318 96 11 chr11 30335453 30336039 -120447514 + L2 LINE L2 951 1593 -1721 1941 180 12 3 chr11 30336039 30336384 -120447169 + MER7A DNA MER2_type 1 346 0 1573 318 96 11 chr11 30336384 30336414 -120447139 + L2 LINE L2 1593 1619 -1695 1226 162 154 22 chr11 30336417 30336656 -120446897 + L1PB4 LINE L1 5847 6128 -28 2431 147 60 0 chr11 30336656 30337058 -120446495 - MSTB LTR MaLR 0 426 1 1226 162 154 22 chr11 30337058 30337090 -120446463 + L1PB4 LINE L1 6128 6154 -2 3157 292 111 16 chr11 30337098 30338458 -120445095 + L2 LINE L2 1604 3084 -229 717 267 99 56 chr11 30338486 30338895 -120444658 - LTR33A LTR ERVL -12 511 99 348 313 67 34 chr11 30338956 30339135 -120444418 + L2 LINE L2 3129 3313 0 6925 41 7 0 chr11 30340478 30341332 -120442221 - L1PA4 LINE L1 0 6155 5296 243 311 25 17 chr11 30341423 30341542 -120442011 + CT-rich Low_complexity Low_complexity 3 122 0 326 294 98 33 chr11 30341769 30341953 -120441600 + MIR SINE MIR 13 208 -54 693 242 12 19 chr11 30342149 30342339 -120441214 + MLT1H LTR MaLR 14 242 -307 286 333 17 8 chr11 30342355 30342472 -120441081 + MIR SINE MIR 122 239 -23 2676 214 6 4 chr11 30342978 30343498 -120440055 + MER74A LTR ERVL 30 550 -8 2318 73 3 7 chr11 30343511 30343799 -120439754 - AluSp SINE Alu -26 287 1 348 264 57 93 chr11 30343882 30344022 -120439531 - MIR SINE MIR -63 145 11 2964 145 41 19 chr11 30344072 30344588 -120438965 + MER1A DNA MER1_type 1 527 0 310 215 54 65 chr11 30344894 30344987 -120438566 + MIR3 SINE MIR 63 154 -54 884 305 53 51 chr11 30345291 30345769 -120437784 + L2 LINE L2 2234 2715 -599 2477 51 6 16 chr11 30345769 30346082 -120437471 + AluY SINE Alu 1 310 -1 884 305 53 51 chr11 30346082 30346114 -120437439 + L2 LINE L2 2715 2745 -569 1958 160 92 15 chr11 30346114 30346459 -120437094 + MSTB1 LTR MaLR 2 384 -48 555 90 0 0 chr11 30346459 30346537 -120437016 + MADE1 DNA Mariner 3 80 0 1958 160 92 15 chr11 30346537 30346591 -120436962 + MSTB1 LTR MaLR 384 432 0 369 302 137 41 chr11 30346591 30347003 -120436550 + L2 LINE L2 2740 3199 -114 270 300 68 72 chr11 30347289 30347526 -120436027 - MIR SINE MIR -1 261 26 1814 218 64 23 chr11 30347551 30348032 -120435521 - MLT1D LTR MaLR -4 501 1 301 200 0 0 chr11 30349066 30349126 -120434427 - MER103 DNA DNA -72 94 35 1862 197 69 17 chr11 30349146 30349553 -120434000 + MSTA LTR MaLR 1 428 0 234 276 0 0 chr11 30349771 30349829 -120433724 - MER103 DNA DNA 0 166 109 685 293 4 36 chr11 30350421 30350701 -120432852 + L1MB8 LINE L1 5635 5905 -273 * 2281 167 59 101 chr11 30350465 30351158 -120432395 + L1MC2 LINE L1 5672 6335 -9 37 23 0 0 chr11 30351158 30351202 -120432351 + AT_rich Low_complexity Low_complexity 1 44 0 1050 250 44 50 chr11 30351849 30352068 -120431485 - MLT1E2 LTR MaLR 0 626 407 1587 184 3 28 chr11 30352068 30352350 -120431203 + AluJo SINE Alu 3 277 -35 1050 250 44 50 chr11 30352350 30352374 -120431179 - MLT1E2 LTR MaLR -219 407 384 297 0 0 0 chr11 30352374 30352407 -120431146 + (CA)n Simple_repeat Simple_repeat 2 34 0 1050 250 44 50 chr11 30352407 30352767 -120430786 - MLT1E2 LTR MaLR -242 384 51 198 0 0 0 chr11 30352833 30352855 -120430698 + (TATG)n Simple_repeat Simple_repeat 2 23 0 3862 144 22 0 chr11 30352865 30353488 -120430065 - L1PA16 LINE L1 -9 6157 5521 2059 174 60 39 chr11 30353491 30353786 -120429767 - MSTB LTR MaLR -4 422 114 2736 81 8 6 chr11 30353786 30354146 -120429407 + THE1B LTR MaLR 1 361 -3 2059 174 60 39 chr11 30354146 30354263 -120429290 - MSTB LTR MaLR -312 114 1 6965 185 35 9 chr11 30354263 30354357 -120429196 - MSTB-int LTR MaLR 0 1651 1561 1223 7 0 0 chr11 30354357 30354497 -120429056 + L1PA2 LINE L1 6016 6155 0 6965 185 35 9 chr11 30354497 30355956 -120427597 - MSTB-int LTR MaLR -90 1561 1 2042 173 64 5 chr11 30355968 30356361 -120427192 - MSTA LTR MaLR -12 416 1 2368 208 48 7 chr11 30356361 30357089 -120426464 - L1PA16 LINE L1 -638 5527 4780 1945 145 11 41 chr11 30357446 30357812 -120425741 + THE1A LTR MaLR 1 355 0 10571 106 35 4 chr11 30357812 30359345 -120424208 + THE1A-int LTR MaLR 1 1580 0 1944 128 28 42 chr11 30359345 30359705 -120423848 + THE1A LTR MaLR 1 355 0 221 0 0 33 chr11 30359889 30359919 -120423634 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1573 220 152 125 chr11 30361186 30361819 -120421734 + MLT1E2 LTR MaLR 5 626 0 610 273 20 0 chr11 30361820 30361970 -120421583 - MIR SINE MIR -65 197 45 218 246 0 35 chr11 30362239 30362296 -120421257 + MIR SINE MIR 63 117 -91 1006 205 131 11 chr11 30362312 30362640 -120420913 + MSTA LTR MaLR 1 364 0 370 250 56 74 chr11 30362693 30362909 -120420644 + L1ME4a LINE L1 5789 6000 -121 211 293 189 19 chr11 30363159 30363265 -120420288 + L2 LINE L2 3134 3257 -15 421 172 36 25 chr11 30364108 30364260 -120419293 + MLT1B LTR MaLR 1 188 -186 409 250 0 0 chr11 30364321 30364409 -120419144 + MLT1B LTR MaLR 301 388 -2 2107 148 120 5 chr11 30365288 30365672 -120417881 - MSTA LTR MaLR 0 428 1 352 311 78 53 chr11 30366058 30366264 -120417289 + MLT1K LTR MaLR 372 582 -6 310 361 32 32 chr11 30367149 30367307 -120416246 - LTR67 LTR ERVL -251 306 149 305 250 35 62 chr11 30367515 30367659 -120415894 - MER103 DNA DNA -21 145 6 1381 256 76 10 chr11 30368465 30368872 -120414681 - MLT1C LTR MaLR 0 467 34 180 0 0 0 chr11 30368999 30369019 -120414534 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 234 0 0 0 chr11 30369018 30369044 -120414509 + (TG)n Simple_repeat Simple_repeat 2 27 0 255 315 11 22 chr11 30369516 30369605 -120413948 - MER5A DNA MER1_type 0 189 102 2599 111 3 8 chr11 30369615 30369992 -120413561 + THE1C LTR MaLR 1 375 0 225 331 116 8 chr11 30370266 30370387 -120413166 + L2 LINE L2 3137 3270 -2 379 333 108 7 chr11 30371185 30371391 -120412162 + MIR SINE MIR 20 248 -14 239 114 0 23 chr11 30372239 30372283 -120411270 - L1MCa LINE L1 -4378 2048 2006 291 177 0 62 chr11 30372296 30372392 -120411161 - L1MC4 LINE L1 -1339 6703 6614 372 189 0 0 chr11 30372392 30372466 -120411087 + (CATATA)n Simple_repeat Simple_repeat 6 79 0 228 254 0 0 chr11 30372466 30372521 -120411032 + GA-rich Low_complexity Low_complexity 1 55 0 1888 265 89 33 chr11 30372755 30373426 -120410127 + L2 LINE L2 2084 2792 -522 254 314 17 25 chr11 30373419 30373537 -120410016 + L2 LINE L2 3192 3308 -5 * 509 258 84 24 chr11 30374908 30375075 -120408478 + MER5B DNA MER1_type 1 177 -1 320 179 18 0 chr11 30375229 30375285 -120408268 + MER69 DNA AcHobo 1 57 -2469 515 264 7 0 chr11 30375437 30375581 -120407972 + MER69 DNA AcHobo 2382 2526 0 362 303 81 46 chr11 30376659 30376908 -120406645 - L1 LINE L1 -1852 4294 4055 1893 143 0 19 chr11 30376908 30377216 -120406337 - AluSg1 SINE Alu -7 302 1 362 303 81 46 chr11 30377216 30377570 -120405983 - L1 LINE L1 -2091 4055 3670 216 242 16 32 chr11 30377964 30378026 -120405527 - MIR SINE MIR -122 140 80 267 333 0 0 chr11 30378267 30378372 -120405181 - L1P LINE L1 -2329 3817 3713 22 0 0 0 chr11 30378699 30378721 -120404832 + AT_rich Low_complexity Low_complexity 1 22 0 4573 200 37 18 chr11 30379468 30380489 -120403064 + L1MC3 LINE L1 5439 6479 -1306 33 25 0 0 chr11 30380568 30380608 -120402945 + AT_rich Low_complexity Low_complexity 1 40 0 2682 111 13 0 chr11 30380653 30381041 -120402512 - L1PA10 LINE L1 0 6168 5776 1490 228 46 52 chr11 30381086 30381604 -120401949 - Charlie1b DNA MER1_type -8 515 1 4933 176 24 25 chr11 30381689 30383347 -120400206 + L1MA7 LINE L1 4645 6291 0 462 145 103 62 chr11 30383355 30383500 -120400053 + L1MA9 LINE L1 6161 6311 -1 2143 108 0 13 chr11 30384139 30384444 -120399109 + AluSg SINE Alu 9 309 -1 635 187 8 15 chr11 30384675 30384809 -120398744 + MLT1B LTR MaLR 11 143 -247 236 280 65 0 chr11 30384814 30384907 -120398646 + MLT1I LTR MaLR 72 170 -220 1803 194 13 76 chr11 30384907 30385381 -120398172 + L1MA10 LINE L1 5891 6334 0 740 241 10 31 chr11 30385634 30385829 -120397724 - L1PB4 LINE L1 0 6156 5966 561 300 60 15 chr11 30385866 30386066 -120397487 + MLT1I LTR MaLR 198 406 -3 21 71 0 0 chr11 30386948 30386990 -120396563 + AT_rich Low_complexity Low_complexity 1 42 0 1408 199 17 30 chr11 30387638 30387939 -120395614 - AluJo SINE Alu -15 297 1 1197 207 102 18 chr11 30388262 30388537 -120395016 - AluJb SINE Alu -2 300 3 371 318 94 75 chr11 30388634 30389059 -120394494 - L1ME LINE L1 -372 5818 5386 477 287 67 46 chr11 30389076 30389404 -120394149 - L1ME LINE L1 -4641 1574 1240 546 235 51 99 chr11 30389432 30389988 -120393565 - L1ME LINE L1 -4982 1223 667 374 364 68 22 chr11 30390358 30390773 -120392780 - L1ME LINE L1 -5929 467 34 243 311 0 0 chr11 30391627 30391701 -120391852 + MER63 DNA MER1_type 1 700 -136 222 206 151 27 chr11 30392362 30392435 -120391118 + L2 LINE L2 3232 3313 0 577 239 8 0 chr11 30392502 30392619 -120390934 + FLAM_A SINE Alu 5 122 -11 209 143 20 20 chr11 30394239 30394288 -120389265 + CT-rich Low_complexity Low_complexity 2 50 0 1257 234 58 58 chr11 30394601 30394859 -120388694 - MLT1C LTR MaLR -1 466 206 1881 123 4 7 chr11 30394859 30395135 -120388418 - AluSx SINE Alu -37 275 1 1257 234 58 58 chr11 30395135 30395338 -120388215 - MLT1C LTR MaLR -260 207 5 214 301 24 24 chr11 30395375 30395458 -120388095 - MIR SINE MIR -136 126 44 190 288 14 41 chr11 30395544 30395617 -120387936 + L2 LINE L2 3243 3313 0 229 163 41 0 chr11 30395890 30395939 -120387614 - L1MC4 LINE L1 -1334 6708 6658 210 71 0 0 chr11 30395939 30395967 -120387586 + (TG)n Simple_repeat Simple_repeat 2 29 0 354 315 27 7 chr11 30397697 30397846 -120385707 + MIR SINE MIR 101 252 -10 278 213 0 13 chr11 30399010 30399085 -120384468 + (TATG)n Simple_repeat Simple_repeat 3 76 0 231 36 0 0 chr11 30399192 30399220 -120384333 + (CA)n Simple_repeat Simple_repeat 1 28 0 327 277 26 19 chr11 30400073 30400228 -120383325 + (TA)n Simple_repeat Simple_repeat 1 156 0 303 250 55 47 chr11 30400240 30400368 -120383185 - L1MC4 LINE L1 -1339 6703 6575 345 47 0 0 chr11 30400460 30400503 -120383050 + (CA)n Simple_repeat Simple_repeat 1 43 0 462 333 70 5 chr11 30400564 30400777 -120382776 + MIR SINE MIR 36 262 0 54 56 0 0 chr11 30400851 30400940 -120382613 + AT_rich Low_complexity Low_complexity 1 89 0 2356 84 18 60 chr11 30401215 30401394 -120382159 + THE1B LTR MaLR 1 157 -207 2114 129 0 0 chr11 30401394 30401696 -120381857 + AluSx SINE Alu 1 302 -10 2356 84 18 60 chr11 30401696 30401896 -120381657 + THE1B LTR MaLR 157 364 0 3170 81 37 0 chr11 30403374 30403809 -120379744 + MLT2A2 LTR ERVL 3 453 0 333 0 0 0 chr11 30403901 30403938 -120379615 + (TG)n Simple_repeat Simple_repeat 2 38 0 2453 60 0 3 chr11 30406359 30406658 -120376895 + AluY SINE Alu 1 298 -13 40 21 0 0 chr11 30406987 30407034 -120376519 + AT_rich Low_complexity Low_complexity 1 47 0 233 319 32 0 chr11 30407513 30407607 -120375946 + L1ME4a LINE L1 5946 6042 -79 21 82 0 0 chr11 30407643 30407692 -120375861 + AT_rich Low_complexity Low_complexity 1 49 0 751 257 0 33 chr11 30407753 30407936 -120375617 + MER5B DNA MER1_type 2 178 0 22 0 0 0 chr11 30408238 30408260 -120375293 + AT_rich Low_complexity Low_complexity 1 22 0 265 292 29 3 chr11 30408396 30408556 -120374997 - MIR SINE MIR -54 208 2 306 301 176 0 chr11 30409228 30409364 -120374189 + L2 LINE L2 2226 2385 -929 432 367 162 18 chr11 30409368 30409822 -120373731 + L2 LINE L2 2550 3070 -243 545 347 29 67 chr11 30410428 30411044 -120372509 + HAL1b LINE L1 49 641 -707 34 89 0 0 chr11 30411044 30411134 -120372419 + AT_rich Low_complexity Low_complexity 1 90 0 252 0 0 0 chr11 30411523 30411551 -120372002 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 303 28 0 0 chr11 30411550 30411586 -120371967 + (CA)n Simple_repeat Simple_repeat 2 37 0 479 329 75 49 chr11 30411675 30412515 -120371038 + L1M4 LINE L1 2287 3174 -2972 554 284 59 22 chr11 30412742 30413063 -120370490 + L1MC4 LINE L1 7163 7495 -547 232 259 0 0 chr11 30413194 30413213 -120370340 + A-rich Low_complexity Low_complexity 1 19 -39 1337 164 152 8 chr11 30413213 30413476 -120370077 + AluJb SINE Alu 2 302 0 232 259 0 0 chr11 30413476 30413514 -120370039 + A-rich Low_complexity Low_complexity 18 58 0 385 241 78 43 chr11 30414688 30414829 -120368724 + MLT1J2 LTR MaLR 20 165 -285 936 115 0 0 chr11 30414862 30414984 -120368569 + FLAM_C SINE Alu 2 123 -20 361 167 15 0 chr11 30415012 30415078 -120368475 - LTR30 LTR ERV1 -104 618 552 234 250 132 0 chr11 30415131 30415199 -120368354 + AluS SINE Alu 224 300 -1 348 161 0 0 chr11 30415199 30415261 -120368292 + GA-rich Low_complexity Low_complexity 1 62 0 2129 112 30 0 chr11 30416209 30416504 -120367049 - AluSq SINE Alu -9 304 1 591 15 0 0 chr11 30416709 30416777 -120366776 + (TA)n Simple_repeat Simple_repeat 1 68 0 1014 314 89 28 chr11 30417791 30418228 -120365325 + LTR33 LTR ERVL 3 466 -55 1292 300 124 20 chr11 30418567 30419114 -120364439 + MLT2F LTR ERVL 59 662 -1 31 0 0 0 chr11 30419963 30419994 -120363559 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr11 30420604 30420625 -120362928 + AT_rich Low_complexity Low_complexity 1 21 0 329 291 169 0 chr11 30421034 30421182 -120362371 - MIR SINE MIR -39 223 51 233 154 39 0 chr11 30422182 30422234 -120361319 + CT-rich Low_complexity Low_complexity 2 55 0 2045 125 0 0 chr11 30422358 30422646 -120360907 + AluSq SINE Alu 16 303 -10 2575 172 70 78 chr11 30423892 30424588 -120358965 - LTR8 LTR ERV1 0 691 1 21 71 0 0 chr11 30425117 30425159 -120358394 + AT_rich Low_complexity Low_complexity 1 42 0 2358 235 117 29 chr11 30425970 30426831 -120356722 - L1MC4 LINE L1 0 8042 7106 2715 260 123 41 chr11 30426869 30428197 -120355356 - L1MC4a LINE L1 -1103 6705 5269 201 244 15 7 chr11 30428295 30428430 -120355123 + (TA)n Simple_repeat Simple_repeat 2 137 0 370 279 106 56 chr11 30428595 30429093 -120354460 - L1MC4a LINE L1 -886 5260 4738 354 266 71 71 chr11 30429479 30429731 -120353822 - L1MC4a LINE L1 -1981 4165 3914 847 279 27 0 chr11 30429954 30430173 -120353380 - MER115 DNA AcHobo -7 686 462 1159 179 88 148 chr11 30430649 30431271 -120352282 + LTR4 LTR ERV1 1 585 -3 38404 162 33 21 chr11 30431294 30437754 -120345799 + HERV3 LTR ERV1 19 6555 -1871 8856 171 49 32 chr11 30437754 30439496 -120344057 + HERV3 LTR ERV1 6656 8426 0 1100 175 87 159 chr11 30439497 30440131 -120343422 + LTR4 LTR ERV1 1 588 0 389 293 58 67 chr11 30440225 30440465 -120343088 + L1ME4a LINE L1 5592 5833 -288 1534 203 10 17 chr11 30440465 30440755 -120342798 - AluJo SINE Alu -24 288 1 389 293 58 67 chr11 30440755 30441036 -120342517 + L1ME4a LINE L1 5833 6108 -13 199 289 0 0 chr11 30441049 30441094 -120342459 + L3 LINE CR1 1514 1558 -19 28 0 0 0 chr11 30441531 30441559 -120341994 + AT_rich Low_complexity Low_complexity 1 28 0 324 351 53 0 chr11 30441743 30441894 -120341659 + MIR SINE MIR 39 197 -65 26 50 0 0 chr11 30442449 30442489 -120341064 + AT_rich Low_complexity Low_complexity 1 40 0 215 290 145 30 chr11 30444331 30444462 -120339091 - MIR SINE MIR -116 146 1 309 287 47 16 chr11 30445086 30445215 -120338338 - L2 LINE L2 -58 3255 3123 181 397 0 0 chr11 30445714 30445777 -120337776 + MIR SINE MIR 91 153 -55 1645 251 15 23 chr11 30446502 30446973 -120336580 + MLT1C LTR MaLR 1 467 0 306 0 0 0 chr11 30447721 30447755 -120335798 + (TG)n Simple_repeat Simple_repeat 1 34 0 430 293 20 13 chr11 30448069 30448219 -120335334 - MIR SINE MIR -6 256 106 682 183 8 0 chr11 30448347 30448467 -120335086 + FLAM_C SINE Alu 3 123 -20 23 0 0 0 chr11 30448483 30448506 -120335047 + AT_rich Low_complexity Low_complexity 1 23 0 766 297 24 0 chr11 30449029 30449238 -120334315 + MIR SINE MIR 8 221 -41 23 0 0 0 chr11 30449259 30449282 -120334271 + AT_rich Low_complexity Low_complexity 1 23 0 194 302 111 16 chr11 30449376 30449439 -120334114 - MIR SINE MIR -108 100 32 1501 104 45 0 chr11 30449614 30449834 -120333719 - MER30 DNA MER1_type 0 230 1 327 295 121 30 chr11 30450296 30450462 -120333091 - MIR SINE MIR -72 190 10 281 236 62 120 chr11 30451524 30451732 -120331821 + MIR SINE MIR 57 252 -10 22 0 0 0 chr11 30451742 30451764 -120331789 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 30452554 30452575 -120330978 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr11 30453065 30453108 -120330445 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr11 30453149 30453170 -120330383 + AT_rich Low_complexity Low_complexity 1 21 0 249 281 79 22 chr11 30453296 30453435 -120330118 + L1ME LINE L1 5424 5570 -592 186 133 0 0 chr11 30453550 30453580 -120329973 + (CA)n Simple_repeat Simple_repeat 2 31 0 652 332 69 24 chr11 30454380 30454841 -120328712 + HAL1 LINE L1 804 1285 -1222 233 268 113 0 chr11 30454851 30454922 -120328631 + HAL1 LINE L1 1680 1758 -749 253 330 46 31 chr11 30455142 30455403 -120328150 + L1MDa LINE L1 958 1222 -4897 363 300 101 44 chr11 30455450 30455739 -120327814 + L1MDa LINE L1 1316 1586 -914 22 35 0 0 chr11 30455739 30455768 -120327785 + AT_rich Low_complexity Low_complexity 1 29 0 363 300 101 44 chr11 30455768 30455825 -120327728 + L1MDa LINE L1 1586 1638 -862 23 0 0 0 chr11 30456405 30456428 -120327125 + AT_rich Low_complexity Low_complexity 1 23 0 440 281 102 59 chr11 30456432 30457040 -120326513 + L1MDa LINE L1 2303 2884 -3245 279 0 0 0 chr11 30457040 30457071 -120326482 + (TA)n Simple_repeat Simple_repeat 2 32 0 440 281 102 59 chr11 30457071 30457184 -120326369 + L1MDa LINE L1 2884 2991 -3138 1960 125 40 0 chr11 30457184 30457480 -120326073 + AluSg SINE Alu 1 308 -2 440 281 102 59 chr11 30457480 30457789 -120325764 + L1MDa LINE L1 2991 3378 -2751 25 31 0 0 chr11 30458060 30458092 -120325461 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr11 30458204 30458225 -120325328 + AT_rich Low_complexity Low_complexity 1 21 0 533 282 18 0 chr11 30458374 30458544 -120325009 - L1ME3A LINE L1 -222 5948 5776 270 258 0 0 chr11 30458661 30458727 -120324826 - MER116 DNA Mariner -14 66 1 183 363 18 71 chr11 30458763 30458783 -120324770 + L2 LINE L2 3149 3169 -103 1608 141 28 94 chr11 30458783 30459144 -120324409 + MER1B DNA MER1_type 1 337 0 183 363 18 71 chr11 30459144 30459236 -120324317 + L2 LINE L2 3169 3255 -17 183 100 0 0 chr11 30459853 30459883 -120323670 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 358 304 109 70 chr11 30459911 30460224 -120323329 + L1MDa LINE L1 3335 3659 -2470 27 29 0 0 chr11 30460348 30460382 -120323171 + AT_rich Low_complexity Low_complexity 1 34 0 2417 87 0 0 chr11 30460603 30460914 -120322639 + AluY SINE Alu 1 311 0 5181 152 10 24 chr11 30461184 30461694 -120321859 - L1MB1 LINE L1 -6 6162 5647 2186 110 0 7 chr11 30461694 30461993 -120321560 - AluSc SINE Alu -12 297 1 5181 152 10 24 chr11 30461993 30462646 -120320907 - L1MB1 LINE L1 -521 5647 5018 1537 229 22 14 chr11 30462654 30463016 -120320537 - MLT1A1 LTR MaLR 0 365 1 192 326 51 58 chr11 30466329 30466467 -120317086 + MIR SINE MIR 52 188 -74 22 0 0 0 chr11 30467297 30467319 -120316234 + AT_rich Low_complexity Low_complexity 1 22 0 360 61 20 0 chr11 30467456 30467505 -120316048 + MADE1 DNA Mariner 6 55 -25 1562 241 65 45 chr11 30467759 30468343 -120315210 - L1ME2 LINE L1 -127 6037 5442 261 159 204 23 chr11 30468400 30468488 -120315065 - L1ME LINE L1 -682 5488 5385 1558 227 79 36 chr11 30468572 30469157 -120314396 + HAL1 LINE L1 852 1461 -1046 249 202 146 11 chr11 30469167 30469256 -120314297 + HAL1 LINE L1 1551 1651 -856 38 39 0 39 chr11 30469951 30470029 -120313524 + AT_rich Low_complexity Low_complexity 1 75 0 28 61 0 0 chr11 30470050 30470099 -120313454 + AT_rich Low_complexity Low_complexity 1 49 0 297 268 37 12 chr11 30471519 30471601 -120311952 - MIR3 SINE MIR -121 87 4 2075 91 7 45 chr11 30472265 30472573 -120310980 + AluSq SINE Alu 5 300 -13 214 203 0 85 chr11 30473795 30473854 -120309699 - MIR SINE MIR -1 261 208 305 340 139 14 chr11 30474072 30474287 -120309266 - HAL1b LINE L1 -1046 302 61 520 291 141 60 chr11 30474298 30474844 -120308709 + MLT1E LTR MaLR 1 590 -3 2359 73 0 0 chr11 30475191 30475510 -120308043 - AluY SINE Alu 0 311 1 50 31 0 0 chr11 30477597 30477661 -120305892 + AT_rich Low_complexity Low_complexity 1 64 0 315 71 0 0 chr11 30477853 30477895 -120305658 + (CA)n Simple_repeat Simple_repeat 2 43 0 2959 63 5 0 chr11 30479445 30479826 -120303727 - L1PA7 LINE L1 0 6154 5772 1734 183 71 45 chr11 30479839 30480261 -120303292 - Tigger2a DNA MER2_type -1 433 1 3549 172 10 67 chr11 30480427 30481130 -120302423 + L1M3f LINE L1 6 668 -4660 648 312 41 19 chr11 30481603 30481872 -120301681 - LTR33 LTR ERVL -237 284 10 1088 179 0 0 chr11 30481933 30482112 -120301441 - MSTA LTR MaLR 0 428 250 569 180 27 0 chr11 30482114 30482225 -120301328 + L1M3f LINE L1 531 644 -4684 1340 172 31 12 chr11 30482225 30482481 -120301072 - MSTA LTR MaLR -165 263 3 9405 166 26 8 chr11 30482513 30484120 -120299433 - MSTA-int LTR MaLR -15 1636 1 2363 162 36 2 chr11 30484120 30484534 -120299019 - MSTA LTR MaLR 0 428 1 1951 162 0 0 chr11 30485361 30485658 -120297895 + AluJb SINE Alu 2 298 -14 314 292 71 30 chr11 30486959 30487127 -120296426 - MER5B DNA MER1_type -3 175 1 183 286 36 98 chr11 30487147 30487259 -120296294 - MIR SINE MIR -63 145 41 * 451 296 50 30 chr11 30487219 30487418 -120296135 + MIR SINE MIR 20 222 -40 467 245 187 26 chr11 30487666 30487821 -120295732 + MER5A DNA MER1_type 10 189 0 290 25 0 25 chr11 30489027 30489067 -120294486 + (GA)n Simple_repeat Simple_repeat 2 40 0 261 234 171 27 chr11 30489932 30490043 -120293510 + MIR SINE MIR 126 252 -10 1347 229 18 4 chr11 30491916 30492195 -120291358 + AluJo SINE Alu 1 283 -19 38 68 0 0 chr11 30492212 30492285 -120291268 + AT_rich Low_complexity Low_complexity 1 73 0 452 315 20 51 chr11 30492678 30492932 -120290621 + L1M4 LINE L1 4789 5034 -1112 6300 85 15 2 chr11 30493054 30494187 -120289366 + L1PA13 LINE L1 5016 6160 -3 4274 173 40 12 chr11 30494187 30495008 -120288545 + L1PA16 LINE L1 5323 6166 0 720 201 169 0 chr11 30495021 30495210 -120288343 + MER67D LTR ERV1 294 514 0 794 292 14 20 chr11 30496518 30496830 -120286723 - L1MC/D LINE L1 -768 5591 5281 285 292 70 33 chr11 30497059 30497302 -120286251 - L1MC/D LINE L1 -1173 4973 4722 21 36 0 0 chr11 30497335 30497363 -120286190 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 30498516 30498537 -120285016 + AT_rich Low_complexity Low_complexity 1 21 0 1514 209 16 44 chr11 30498550 30498913 -120284640 + MLT1A1 LTR MaLR 1 353 -12 1513 296 73 24 chr11 30498914 30499116 -120284437 + MLT1E LTR MaLR 17 208 -385 183 42 0 0 chr11 30499116 30499140 -120284413 + (CTTG)n Simple_repeat Simple_repeat 1 24 0 1513 296 73 24 chr11 30499140 30499485 -120284068 + MLT1E LTR MaLR 208 591 -2 635 282 157 28 chr11 30499498 30500011 -120283542 - MLT1G LTR MaLR 0 590 3 250 308 43 76 chr11 30500094 30500279 -120283274 + MIR SINE MIR 64 242 -20 543 314 59 8 chr11 30500776 30501012 -120282541 + MIR SINE MIR 1 248 -14 313 290 40 40 chr11 30501870 30501970 -120281583 - MIR SINE MIR -130 132 33 226 359 0 0 chr11 30502106 30502170 -120281383 + L2 LINE L2 3209 3272 0 244 214 24 107 chr11 30502986 30503070 -120280483 + L2 LINE L2 3191 3267 -5 456 247 222 26 chr11 30503213 30503407 -120280146 - MIR SINE MIR -14 248 17 363 44 0 0 chr11 30503623 30503668 -120279885 + (CAT)n Simple_repeat Simple_repeat 2 46 0 22 70 0 0 chr11 30503689 30503732 -120279821 + AT_rich Low_complexity Low_complexity 1 43 0 311 236 162 54 chr11 30503947 30504095 -120279458 + MIR SINE MIR 85 248 -14 1850 191 16 8 chr11 30504919 30505291 -120278262 + L1PB4 LINE L1 5780 6154 -2 340 302 71 40 chr11 30505390 30505516 -120278037 - L2 LINE L2 -5 3308 3179 342 371 13 19 chr11 30505981 30506140 -120277413 - MIR SINE MIR -102 160 3 2679 106 0 8 chr11 30507246 30507624 -120275929 + THE1C LTR MaLR 1 375 0 1013 233 33 70 chr11 30507663 30507994 -120275559 - L1M4 LINE L1 -2331 3815 3497 300 281 119 19 chr11 30508000 30508210 -120275343 - L1M4 LINE L1 -2692 3454 3224 291 214 107 0 chr11 30508278 30508381 -120275172 + L1ME1 LINE L1 4104 4217 -1929 1273 206 103 7 chr11 30508443 30508562 -120274991 - MER2 DNA MER2_type -15 330 224 1705 108 9 4 chr11 30508562 30508793 -120274760 + AluSg SINE Alu 62 293 -17 1273 206 103 7 chr11 30508793 30508965 -120274588 - MER2 DNA MER2_type -121 224 11 2836 127 13 16 chr11 30508966 30509415 -120274138 - MER83 LTR ERV1 0 448 1 2387 229 90 43 chr11 30509443 30509956 -120273597 + L1ME1 LINE L1 4226 4714 -1470 2327 99 3 3 chr11 30509956 30510269 -120273284 + AluSq SINE Alu 1 313 0 2387 229 90 43 chr11 30510269 30510393 -120273160 + L1ME1 LINE L1 4714 4831 -1353 2329 102 0 13 chr11 30510393 30510707 -120272846 + AluSg SINE Alu 1 310 0 2387 229 90 43 chr11 30510707 30511151 -120272402 + L1ME1 LINE L1 4831 5360 -824 2247 118 3 0 chr11 30511151 30511457 -120272096 + AluSx SINE Alu 1 307 -5 2387 229 90 43 chr11 30511457 30511552 -120272001 + L1ME1 LINE L1 5360 5449 -735 4060 140 38 68 chr11 30511563 30512831 -120270722 - pTR5 LTR ERV1 -143 2295 744 2211 237 74 26 chr11 30512831 30513520 -120270033 + L1ME1 LINE L1 5441 6162 -4 405 0 0 0 chr11 30514707 30514752 -120268801 + (TG)n Simple_repeat Simple_repeat 2 46 0 1931 156 8 50 chr11 30515574 30515953 -120267600 + MLT1A1 LTR MaLR 1 363 -2 370 323 15 31 chr11 30516407 30516537 -120267016 - L2 LINE L2 -2 3311 3184 470 309 100 26 chr11 30517091 30517321 -120266232 - MIR SINE MIR -11 251 5 1390 251 43 3 chr11 30517801 30518147 -120265406 - MLT1A1 LTR MaLR -5 360 1 466 172 0 11 chr11 30518185 30518278 -120265275 + L1MB3 LINE L1 6080 6171 -12 557 315 35 10 chr11 30518278 30518475 -120265078 - MIR SINE MIR -56 206 5 363 310 71 7 chr11 30518581 30518736 -120264817 + MIR3 SINE MIR 38 202 -6 527 287 50 11 chr11 30519409 30519590 -120263963 - MIR SINE MIR 0 262 75 4789 104 1 8 chr11 30520062 30520770 -120262783 + L1PA14 LINE L1 5454 6156 -5 468 416 64 16 chr11 30521265 30521700 -120261853 - L2 LINE L2 0 3272 2817 532 337 53 21 chr11 30522239 30522482 -120261071 - MIR SINE MIR -1 261 11 626 271 49 31 chr11 30523172 30523397 -120260156 + MIR SINE MIR 2 230 -32 206 330 75 9 chr11 30523564 30523670 -120259883 - L2 LINE L2 -406 2908 2796 227 114 23 0 chr11 30525935 30525979 -120257574 + (CA)n Simple_repeat Simple_repeat 2 46 0 598 282 28 37 chr11 30527001 30527217 -120256336 + MIR SINE MIR 48 261 -1 293 205 45 10 chr11 30527563 30527696 -120255857 - MER58B DNA MER1_type 0 341 173 259 281 122 0 chr11 30527724 30527806 -120255747 - LTR33 LTR ERVL -424 97 6 418 270 43 17 chr11 30527974 30528089 -120255464 + L2 LINE L2 3196 3313 0 808 262 18 18 chr11 30528132 30528361 -120255192 - L1ME3A LINE L1 -6 6662 6434 903 279 16 10 chr11 30528363 30528675 -120254878 - L1ME3A LINE L1 -274 6394 6081 2332 151 54 14 chr11 30528680 30529104 -120254449 - MER65A LTR ERV1 -4 441 1 498 281 80 31 chr11 30529104 30529636 -120253917 - L1ME3A LINE L1 -578 6084 5522 195 235 0 0 chr11 30529653 30529704 -120253849 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 234 261 23 0 chr11 30529704 30529792 -120253761 - L1MC4 LINE L1 -1339 6703 6614 * 243 214 71 0 chr11 30529716 30529800 -120253753 + L1MC4 LINE L1 6614 6703 -1339 * 265 229 0 62 chr11 30529796 30529892 -120253661 + L1MC4 LINE L1 6614 6703 -1339 1859 279 93 43 chr11 30529925 30530602 -120252951 - L1ME3A LINE L1 -1163 5481 4839 1063 200 132 71 chr11 30530602 30530967 -120252586 - MLT1B LTR MaLR -3 387 1 1859 279 93 43 chr11 30530967 30531942 -120251611 - L1ME3A LINE L1 -1805 4839 3719 371 217 129 75 chr11 30531945 30532172 -120251381 + MLT1D LTR MaLR 8 265 -202 765 282 49 44 chr11 30532206 30532488 -120251065 - L1ME3A LINE L1 -3327 3317 3029 1651 180 3 23 chr11 30532488 30532793 -120250760 - AluSx SINE Alu -9 303 5 765 282 49 44 chr11 30532793 30533059 -120250494 - L1ME3A LINE L1 -3615 3029 2766 347 270 135 78 chr11 30533162 30533258 -120250295 - L1ME3A LINE L1 -4161 2664 2575 204 40 0 0 chr11 30533258 30533283 -120250270 + (TTA)n Simple_repeat Simple_repeat 2 26 0 347 270 135 78 chr11 30533283 30533361 -120250192 - L1ME3A LINE L1 -4250 2575 2503 371 298 72 33 chr11 30533361 30533542 -120250011 + MER5A DNA MER1_type 2 189 0 347 270 135 78 chr11 30533542 30533685 -120249868 - L1ME3A LINE L1 -4322 2503 2328 2526 143 7 49 chr11 30533749 30534196 -120249357 - MSTA LTR MaLR 0 428 1 520 334 31 70 chr11 30534203 30534691 -120248862 + HERVL LTR ERVL 3379 3847 -1807 270 286 27 54 chr11 30534785 30534970 -120248583 + L1MCc LINE L1 142 321 -6102 256 272 123 0 chr11 30535018 30535099 -120248454 + L1MCc LINE L1 816 906 -5517 994 114 54 0 chr11 30535109 30535258 -120248295 + MER57B LTR ERV1 1 157 -277 979 122 48 0 chr11 30535270 30535417 -120248136 + MER57B LTR ERV1 6 159 -275 389 219 62 0 chr11 30535472 30535568 -120247985 + L1MCc LINE L1 1121 1222 -5201 351 359 23 0 chr11 30535676 30535932 -120247621 - L1ME3A LINE L1 -4722 1922 1661 471 279 44 103 chr11 30535932 30536332 -120247221 - L1ME3A LINE L1 -4881 1763 1275 1751 175 10 3 chr11 30536332 30536629 -120246924 + AluJb SINE Alu 4 302 -10 471 279 44 103 chr11 30536629 30536682 -120246871 - L1ME3A LINE L1 -5369 1275 1220 30 0 0 0 chr11 30537905 30537935 -120245618 + AT_rich Low_complexity Low_complexity 1 30 0 868 166 20 85 chr11 30538080 30538279 -120245274 - MER5A DNA MER1_type -1 188 3 404 215 19 37 chr11 30540230 30540337 -120243216 - MER58B DNA MER1_type -8 333 229 254 312 117 39 chr11 30540337 30540491 -120243062 + MIR SINE MIR 37 202 -60 * 277 284 160 31 chr11 30540471 30540665 -120242888 - MIR SINE MIR -16 246 28 336 361 33 0 chr11 30543226 30543348 -120240205 + L3 LINE CR1 1430 1555 -22 2163 111 0 0 chr11 30544648 30544937 -120238616 + AluSc SINE Alu 1 289 -20 347 312 173 10 chr11 30544953 30545155 -120238398 - MIR SINE MIR -14 248 14 399 298 30 66 chr11 30546270 30546468 -120237085 + MIR SINE MIR 1 191 -71 467 293 50 50 chr11 30547498 30547679 -120235874 - MIR SINE MIR -54 208 28 195 139 0 0 chr11 30548025 30548061 -120235492 + (CAT)n Simple_repeat Simple_repeat 3 38 0 267 265 15 0 chr11 30548311 30548379 -120235174 + CT-rich Low_complexity Low_complexity 1 69 0 455 301 122 41 chr11 30548380 30548997 -120234556 - L2 LINE L2 -2 3311 2630 753 333 16 0 chr11 30550585 30550828 -120232725 + MIR SINE MIR 16 262 0 681 336 154 0 chr11 30550915 30551266 -120232287 - LTR16C LTR ERVL -13 478 74 1957 124 10 33 chr11 30551601 30551900 -120231653 - AluSq SINE Alu -21 292 1 231 133 0 0 chr11 30552601 30552646 -120230907 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 215 224 0 0 chr11 30553775 30553824 -120229729 + (TGAA)n Simple_repeat Simple_repeat 4 52 0 241 336 134 22 chr11 30554007 30554141 -120229412 - L2 LINE L2 -8 3264 3116 181 265 0 29 chr11 30554250 30554318 -120229235 + MIR SINE MIR 131 196 -66 292 283 26 26 chr11 30555428 30555541 -120228012 + L2 LINE L2 3201 3313 0 3836 153 13 19 chr11 30555852 30556127 -120227426 + L1PB3 LINE L1 5463 5738 -416 2378 96 0 0 chr11 30556127 30556429 -120227124 + AluSp SINE Alu 1 302 -11 3836 153 13 19 chr11 30556429 30556485 -120227068 + L1PB3 LINE L1 5738 5793 -361 957 42 0 0 chr11 30556485 30556603 -120226950 + (TA)n Simple_repeat Simple_repeat 1 118 0 3836 153 13 19 chr11 30556603 30556962 -120226591 + L1PB3 LINE L1 5793 6150 -4 1638 203 10 0 chr11 30557335 30557625 -120225928 + AluJb SINE Alu 1 293 -19 61 52 0 0 chr11 30557625 30557721 -120225832 + AT_rich Low_complexity Low_complexity 1 96 0 185 191 221 0 chr11 30557766 30557834 -120225719 + MIR SINE MIR 166 248 -14 321 296 91 55 chr11 30557926 30558125 -120225428 + MIR SINE MIR 48 253 -9 284 309 60 23 chr11 30558154 30558304 -120225249 - MIR SINE MIR -64 144 37 2500 68 0 0 chr11 30558305 30558612 -120224941 - AluY SINE Alu -4 307 1 495 238 43 55 chr11 30559401 30559565 -120223988 + MIR SINE MIR 31 192 -70 210 139 0 0 chr11 30559767 30559803 -120223750 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 11732 24 1 4 chr11 30560155 30562300 -120221253 + L1PA3 LINE L1 4014 6155 0 1942 193 25 6 chr11 30562638 30562996 -120220557 + MLT1A1 LTR MaLR 1 365 0 25 0 0 0 chr11 30563070 30563095 -120220458 + AT_rich Low_complexity Low_complexity 1 25 0 372 276 51 0 chr11 30563619 30563717 -120219836 - L2 LINE L2 -3 3310 3208 277 265 40 99 chr11 30563699 30563850 -120219703 + MIR SINE MIR 95 236 -26 * 573 300 57 32 chr11 30565802 30566085 -120217468 + MLT1H LTR MaLR 1 290 -259 269 235 174 68 chr11 30566139 30566271 -120217282 + MLT1H LTR MaLR 396 541 -8 21 36 0 0 chr11 30566638 30566666 -120216887 + AT_rich Low_complexity Low_complexity 1 28 0 260 381 142 0 chr11 30566705 30566902 -120216651 - L3 LINE CR1 -1 1576 1352 198 400 40 32 chr11 30567081 30567206 -120216347 + L2 LINE L2 3111 3236 -36 325 313 208 5 chr11 30568042 30568234 -120215319 + MIR SINE MIR 24 254 -8 2687 131 19 2 chr11 30568234 30568655 -120214898 - MSTA LTR MaLR 0 428 1 536 340 42 5 chr11 30569426 30569641 -120213912 - MIR SINE MIR -11 251 29 736 220 40 0 chr11 30569658 30569808 -120213745 - MER58B DNA MER1_type -7 334 179 818 270 44 24 chr11 30570332 30570589 -120212964 + MIR SINE MIR 4 262 0 197 275 0 0 chr11 30570687 30570727 -120212826 - L2 LINE L2 -86 3186 3147 409 331 26 19 chr11 30571165 30571319 -120212234 + MIR SINE MIR 68 222 -40 2119 117 7 7 chr11 30571335 30571635 -120211918 - AluSx SINE Alu -12 300 1 1005 310 46 33 chr11 30571787 30572245 -120211308 + LTR16B LTR ERVL 1 464 0 201 330 21 21 chr11 30572699 30572796 -120210757 - MIR3 SINE MIR -30 178 82 368 212 27 58 chr11 30573449 30573682 -120209871 - Charlie7 DNA MER1_type 0 2612 39 953 240 147 57 chr11 30574060 30574569 -120208984 + MLT1H1 LTR MaLR 1 555 0 6803 60 13 0 chr11 30575371 30576806 -120206747 + L1PA6 LINE L1 4700 6140 -14 24813 64 6 4 chr11 30576806 30580920 -120202633 + L1PA6 LINE L1 2031 6154 0 189 0 0 0 chr11 30581865 30581886 -120201667 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 910 216 81 24 chr11 30581893 30582226 -120201327 + L1MC5 LINE L1 7298 7649 -312 34 42 0 0 chr11 30582250 30582298 -120201255 + AT_rich Low_complexity Low_complexity 1 48 0 330 302 70 50 chr11 30583890 30584190 -120199363 - MLT1J1 LTR MaLR -2 417 101 32 0 0 0 chr11 30584294 30584326 -120199227 + AT_rich Low_complexity Low_complexity 1 32 0 2125 172 3 3 chr11 30585163 30585529 -120198024 + MER47A DNA MER2_type 1 366 0 600 220 0 0 chr11 30585770 30585888 -120197665 + L1MA5 LINE L1 6137 6254 -46 1373 199 11 53 chr11 30585888 30586170 -120197383 + AluJo SINE Alu 1 270 -42 222 37 0 0 chr11 30586170 30586197 -120197356 + (CA)n Simple_repeat Simple_repeat 2 28 0 294 183 0 0 chr11 30586203 30586263 -120197290 + L1MA6 LINE L1 6241 6300 0 405 144 56 0 chr11 30586300 30586390 -120197163 + L1MB7 LINE L1 6083 6177 -7 186 236 382 11 chr11 30587622 30587711 -120195842 - L2 LINE L2 0 3272 3151 21 0 0 0 chr11 30587733 30587754 -120195799 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr11 30588814 30588838 -120194715 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1121 290 74 15 chr11 30589622 30590025 -120193528 - LTR16B LTR ERVL 0 464 38 481 300 30 0 chr11 30590080 30590280 -120193273 - HERV16 LTR ERVL -2 4994 4789 411 363 75 30 chr11 30590284 30590752 -120192801 - HERVL LTR ERVL -370 5284 4796 272 331 66 33 chr11 30591478 30591659 -120191894 + MIR SINE MIR 20 206 -56 1317 236 68 95 chr11 30592247 30592807 -120190746 + MLT2E LTR ERVL 69 613 -15 332 311 48 0 chr11 30593046 30593149 -120190404 - MIR3 SINE MIR -31 177 70 24 67 0 0 chr11 30593912 30593957 -120189596 + AT_rich Low_complexity Low_complexity 1 45 0 429 278 8 60 chr11 30594060 30594193 -120189360 + L2 LINE L2 3147 3272 0 359 338 54 27 chr11 30595488 30595710 -120187843 - MIR SINE MIR -34 228 1 1319 204 93 41 chr11 30595797 30596259 -120187294 + Charlie4a DNA MER1_type 23 508 0 2292 136 3 9 chr11 30596269 30596608 -120186945 - MER1B DNA MER1_type 0 337 1 396 0 0 0 chr11 30596837 30596881 -120186672 + (TG)n Simple_repeat Simple_repeat 2 45 0 595 342 30 19 chr11 30598691 30598931 -120184622 - MIR SINE MIR -20 242 3 181 344 16 0 chr11 30599830 30599891 -120183662 + L2 LINE L2 2495 2556 -758 315 192 0 0 chr11 30600904 30600977 -120182576 + GA-rich Low_complexity Low_complexity 2 74 0 288 244 47 47 chr11 30601136 30601308 -120182245 + Charlie7 DNA MER1_type 2440 2611 -1 203 298 212 58 chr11 30602141 30602467 -120181086 + L2 LINE L2 2938 3313 0 605 245 82 33 chr11 30604032 30604216 -120179337 + MIR SINE MIR 5 197 -65 424 331 63 56 chr11 30604274 30604353 -120179200 - MLT1J LTR MaLR -92 419 342 1904 160 3 40 chr11 30604353 30604703 -120178850 + MER1B DNA MER1_type 1 337 0 424 331 63 56 chr11 30604703 30604910 -120178643 - MLT1J LTR MaLR -169 342 131 1758 186 3 0 chr11 30605251 30605542 -120178011 - AluJb SINE Alu -16 296 5 1038 178 18 32 chr11 30605722 30605941 -120177612 + MER93b LTR ERV1 1 216 -157 13192 178 46 23 chr11 30605942 30606295 -120177258 - L1PB1 LINE L1 -5 6862 6519 303 28 0 0 chr11 30606295 30606331 -120177222 + (TG)n Simple_repeat Simple_repeat 2 37 0 13192 178 46 23 chr11 30606331 30607646 -120175907 - L1PB1 LINE L1 -348 6519 5236 261 0 0 0 chr11 30607646 30607675 -120175878 + (TTTTA)n Simple_repeat Simple_repeat 4 32 0 13192 178 46 23 chr11 30607675 30610451 -120173102 - L1PB1 LINE L1 -1631 5236 2013 459 143 0 0 chr11 30610451 30610528 -120173025 - MADE1 DNA Mariner -3 77 1 13192 178 46 23 chr11 30610528 30611571 -120171982 - L1PB1 LINE L1 -4854 2013 995 874 166 30 24 chr11 30611620 30611789 -120171764 + MER93b LTR ERV1 204 373 0 2136 191 5 0 chr11 30612170 30612548 -120171005 - MER57A LTR ERV1 0 403 24 524 72 0 0 chr11 30612548 30612617 -120170936 - MER57A LTR ERV1 -327 76 8 2190 233 99 31 chr11 30613993 30614986 -120168567 - MER63D DNA MER1_type 0 1061 2 442 294 0 37 chr11 30615700 30615836 -120167717 - L2 LINE L2 -1 3312 3182 642 338 20 10 chr11 30615976 30616180 -120167373 + L2 LINE L2 2846 3051 -262 1371 181 35 0 chr11 30616216 30616469 -120167084 + MLT2C2 LTR ERVL 1 262 -202 7130 72 167 1 chr11 30616469 30617517 -120166036 + MER11B LTR ERVK 1 1222 -14 453 246 0 0 chr11 30617535 30617635 -120165918 + MLT2C1 LTR ERVL 258 424 -40 1813 102 21 9 chr11 30617862 30618217 -120165336 - LTR7 LTR ERV1 -38 412 1 2535 105 46 30 chr11 30618217 30618655 -120164898 - HERVH LTR ERV1 0 7713 7269 * 5477 98 5 19 chr11 30618638 30619437 -120164116 - HERVH LTR ERV1 -2693 5020 4233 1045 157 52 4 chr11 30619439 30619669 -120163884 + L1MA4 LINE L1 6054 6294 -6 420 337 17 35 chr11 30619891 30620063 -120163490 - MLT1K LTR MaLR -338 250 82 184 396 0 22 chr11 30620224 30620315 -120163238 + MIR SINE MIR 20 108 -100 1544 233 60 35 chr11 30620385 30620836 -120162717 + MLT1C LTR MaLR 1 462 -5 238 333 145 0 chr11 30620858 30620975 -120162578 + MIR SINE MIR 117 250 -12 196 360 29 69 chr11 30621030 30621205 -120162348 - MIR SINE MIR -55 207 40 378 289 87 18 chr11 30621316 30621496 -120162057 - MIR SINE MIR -42 220 27 307 339 45 0 chr11 30622279 30622391 -120161162 - L2 LINE L2 -11 3302 3186 222 233 192 14 chr11 30622389 30622462 -120161091 - MIR SINE MIR -21 241 156 * 238 305 25 25 chr11 30622791 30622909 -120160644 + LTR67 LTR ERVL 434 551 -6 2015 176 30 18 chr11 30622976 30623374 -120160179 + MER57A LTR ERV1 1 403 0 7197 114 139 92 chr11 30624569 30626191 -120157362 + pTR5 LTR ERV1 742 2438 0 307 274 14 0 chr11 30626380 30626453 -120157100 + MER41D LTR ERV1 396 469 -88 26 0 0 0 chr11 30626757 30626783 -120156770 + AT_rich Low_complexity Low_complexity 1 26 0 11453 197 70 29 chr11 30626793 30628289 -120155264 - L1MA7 LINE L1 -24 6471 5037 1817 139 118 21 chr11 30628289 30628621 -120154932 - THE1B LTR MaLR 0 364 1 11630 95 10 1 chr11 30628622 30630186 -120153367 - THE1B-int LTR MaLR -1 1579 1 1840 115 140 19 chr11 30630186 30630508 -120153045 - THE1B LTR MaLR 0 364 4 11453 197 70 29 chr11 30630508 30632214 -120151339 - L1MA7 LINE L1 -1458 5037 3040 1706 162 3 40 chr11 30632214 30632511 -120151042 - AluJo SINE Alu -26 286 1 11453 197 70 29 chr11 30632511 30633504 -120150049 - L1MA7 LINE L1 -3455 3040 2089 1322 164 9 0 chr11 30633574 30633793 -120149760 - 7SLRNA srpRNA srpRNA -92 228 8 4981 242 64 73 chr11 30633803 30636192 -120147361 - L1MA7 LINE L1 -4174 2177 1 253 290 62 80 chr11 30636242 30636418 -120147135 + MIR SINE MIR 64 236 -26 986 130 45 39 chr11 30636480 30636679 -120146874 - THE1C LTR MaLR 0 375 199 381 158 0 0 chr11 30636679 30636761 -120146792 + GA-rich Low_complexity Low_complexity 2 83 0 1003 150 77 21 chr11 30636761 30636814 -120146739 - THE1C LTR MaLR -160 268 219 1071 117 0 0 chr11 30636814 30636994 -120146559 + (GA)n Simple_repeat Simple_repeat 1 180 0 1003 150 77 21 chr11 30636994 30637186 -120146367 - THE1C LTR MaLR -209 219 1 857 172 91 122 chr11 30637529 30637849 -120145704 + MLT1A1 LTR MaLR 1 310 -55 341 192 25 0 chr11 30638725 30638813 -120144740 + MSTD LTR MaLR 277 396 0 2879 13 0 0 chr11 30638847 30639165 -120144388 + AluYb8 SINE Alu 1 318 0 360 333 104 0 chr11 30639394 30639538 -120144015 - MIR SINE MIR -4 258 100 5231 234 45 6 chr11 30639935 30641345 -120142208 - L1PA15 LINE L1 -2268 3878 2414 6085 195 19 6 chr11 30641348 30642424 -120141129 + L1PA15 LINE L1 3877 4937 -1228 2046 148 0 3 chr11 30642424 30642603 -120140950 - AluSq SINE Alu -4 309 130 189 0 0 0 chr11 30642603 30642624 -120140929 + (TA)n Simple_repeat Simple_repeat 1 21 0 2046 148 0 3 chr11 30642624 30642754 -120140799 - AluSq SINE Alu -183 130 1 6085 195 19 6 chr11 30642754 30643938 -120139615 + L1PA15 LINE L1 4937 6164 -1 1587 155 126 32 chr11 30644030 30644371 -120139182 - THE1C LTR MaLR 0 375 3 27 96 0 0 chr11 30644761 30644844 -120138709 + AT_rich Low_complexity Low_complexity 1 83 0 637 202 50 0 chr11 30646151 30646270 -120137283 - FLAM_A SINE Alu -8 125 1 355 396 114 0 chr11 30646591 30646793 -120136760 + MER115 DNA AcHobo 150 374 -319 1603 251 50 7 chr11 30647363 30647806 -120135747 + MLT1C LTR MaLR 6 467 0 382 289 75 6 chr11 30648034 30648193 -120135360 - MIR SINE MIR -41 221 52 2408 100 0 0 chr11 30648291 30648601 -120134952 + AluSg SINE Alu 1 310 0 1970 117 94 26 chr11 30648977 30649318 -120134235 - THE1B LTR MaLR 0 364 1 1691 209 34 75 chr11 30649907 30649964 -120133589 - MER90 LTR ERV1 0 614 556 423 0 0 0 chr11 30649964 30650011 -120133542 + (TA)n Simple_repeat Simple_repeat 2 48 0 1691 209 34 75 chr11 30650011 30650176 -120133377 - MER90 LTR ERV1 -58 556 386 2057 92 0 0 chr11 30650176 30650438 -120133115 - AluSq SINE Alu -10 303 42 1691 209 34 75 chr11 30650438 30650655 -120132898 - MER90 LTR ERV1 -228 386 192 186 43 0 0 chr11 30650657 30650680 -120132873 + (TTG)n Simple_repeat Simple_repeat 2 24 0 461 185 59 92 chr11 30650705 30650824 -120132729 - AluJo SINE Alu -93 219 105 782 215 25 12 chr11 30650839 30651002 -120132551 - MER90 LTR ERV1 -446 168 4 432 337 49 6 chr11 30651580 30651743 -120131810 - MIR SINE MIR -73 189 20 2303 97 0 31 chr11 30651743 30652084 -120131469 - AluY SINE Alu 0 331 1 23 33 0 0 chr11 30652927 30652957 -120130596 + AT_rich Low_complexity Low_complexity 1 30 0 270 0 0 0 chr11 30653223 30653253 -120130300 + (A)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr11 30653609 30653630 -120129923 + AT_rich Low_complexity Low_complexity 1 21 0 233 157 0 39 chr11 30653649 30653700 -120129853 + GA-rich Low_complexity Low_complexity 6 54 0 513 316 24 53 chr11 30654307 30654513 -120129040 + MIR SINE MIR 63 262 0 226 286 188 18 chr11 30654927 30655039 -120128514 + L2 LINE L2 3182 3312 -1 234 317 57 41 chr11 30655052 30655175 -120128378 + L2 LINE L2 3189 3313 0 5015 14 0 0 chr11 30655728 30656298 -120127255 - L1PA3 LINE L1 0 6155 5586 336 102 0 0 chr11 30656716 30656765 -120126788 + (CA)n Simple_repeat Simple_repeat 2 50 0 2081 126 0 0 chr11 30656807 30657093 -120126460 + AluSx SINE Alu 1 286 -26 310 275 123 14 chr11 30657315 30657453 -120126100 + MLT1I LTR MaLR 243 395 -14 277 375 84 21 chr11 30657516 30657753 -120125800 + L2 LINE L2 2722 2973 -341 207 339 17 0 chr11 30657985 30658044 -120125509 + L2 LINE L2 3204 3263 -9 379 361 13 13 chr11 30658502 30658660 -120124893 + MIR3 SINE MIR 30 187 -21 431 370 37 0 chr11 30658805 30658967 -120124586 + MIR SINE MIR 23 190 -72 * 438 287 120 12 chr11 30658966 30659133 -120124420 + L2 LINE L2 2394 2578 -736 920 261 27 37 chr11 30659252 30659620 -120123933 - MLT1A1 LTR MaLR 0 365 1 560 263 86 11 chr11 30659626 30659801 -120123752 - MIR SINE MIR -70 192 5 306 348 45 0 chr11 30659876 30659988 -120123565 + MIR SINE MIR 18 134 -128 673 336 52 0 chr11 30660161 30660432 -120123121 - LTR33 LTR ERVL -225 296 12 589 314 30 30 chr11 30661649 30661864 -120121689 - MIR SINE MIR -19 243 27 323 324 182 35 chr11 30662853 30663023 -120120530 + MER91A DNA MER1_type 1 195 -1 476 298 66 17 chr11 30663973 30664154 -120119399 + MIR SINE MIR 73 262 0 294 173 0 0 chr11 30664521 30664573 -120118980 + L2 LINE L2 3261 3312 -1 275 318 62 54 chr11 30664918 30665047 -120118506 - MIR SINE MIR -58 150 21 184 306 0 0 chr11 30665971 30666020 -120117533 + L3 LINE CR1 1528 1576 -1 197 277 0 0 chr11 30666115 30666162 -120117391 - L2 LINE L2 -33 3239 3193 270 332 49 40 chr11 30666612 30666838 -120116715 - LTR33A LTR ERVL -7 516 289 513 246 31 47 chr11 30666898 30667089 -120116464 - LTR33A LTR ERVL -335 188 1 249 317 93 65 chr11 30667323 30667569 -120115984 - MIR SINE MIR 0 262 10 6517 200 151 16 chr11 30667586 30669132 -120114421 - MER52A LTR ERV1 0 1755 1 270 279 73 0 chr11 30669174 30669242 -120114311 + MIR SINE MIR 12 84 -178 1518 226 87 24 chr11 30669254 30669669 -120113884 - MLT1D LTR MaLR 0 505 65 1563 85 0 10 chr11 30669675 30669876 -120113677 + AluY SINE Alu 1 199 -112 220 382 26 0 chr11 30670177 30670253 -120113300 + L2 LINE L2 3204 3281 -32 1567 188 95 25 chr11 30670259 30670690 -120112863 - MLT1C LTR MaLR -1 466 6 2303 143 20 3 chr11 30673520 30673878 -120109675 - THE1B LTR MaLR 0 364 1 1436 231 81 14 chr11 30673960 30674393 -120109160 + MLT1C LTR MaLR 6 467 0 193 301 87 29 chr11 30675120 30675223 -120108330 + MER5B DNA MER1_type 2 110 -68 245 246 0 18 chr11 30675141 30675198 -120108355 - MER5A DNA MER1_type -25 164 109 403 348 66 49 chr11 30675377 30675785 -120107768 + L2 LINE L2 2895 3309 -4 1357 183 59 83 chr11 30676867 30677310 -120106243 + MSTB1 LTR MaLR 1 432 0 41242 48 3 2 chr11 30677777 30683927 -120099626 - L1PA4 LINE L1 0 6155 3 232 310 14 0 chr11 30684424 30684495 -120099058 - MIR3 SINE MIR -7 201 130 256 282 141 66 chr11 30685027 30685268 -120098285 - MLT1J LTR MaLR -152 359 101 207 258 0 32 chr11 30685350 30685412 -120098141 + MIR SINE MIR 203 262 0 343 316 26 57 chr11 30685441 30685690 -120097863 - MIR SINE MIR -20 242 5 198 0 0 0 chr11 30685696 30685718 -120097835 + (T)n Simple_repeat Simple_repeat 1 22 0 320 339 116 20 chr11 30686740 30687041 -120096512 - L2 LINE L2 -2 3311 2982 679 208 0 0 chr11 30689113 30689243 -120094310 + MLT1F1 LTR MaLR 5 134 -433 754 227 0 0 chr11 30689243 30689375 -120094178 + FLAM_A SINE Alu 1 132 -10 1476 261 89 12 chr11 30689378 30689795 -120093758 + MLT1F1 LTR MaLR 119 567 0 2452 103 3 0 chr11 30689994 30690306 -120093247 + AluSp SINE Alu 1 313 0 401 297 80 0 chr11 30690390 30690528 -120093025 + MIR SINE MIR 4 152 -110 312 120 0 0 chr11 30690903 30690953 -120092600 + (CA)n Simple_repeat Simple_repeat 1 50 0 969 198 50 0 chr11 30691805 30692007 -120091546 - MER20 DNA MER1_type -4 215 4 437 333 67 13 chr11 30692022 30692247 -120091306 - MLT1K LTR MaLR -35 553 317 727 173 0 43 chr11 30692290 30692429 -120091124 + AluJb SINE Alu 164 296 -16 483 248 14 43 chr11 30693754 30693895 -120089658 + MIR SINE MIR 124 260 -2 342 267 32 72 chr11 30694193 30694382 -120089171 - MIR SINE MIR -61 147 3 259 369 10 0 chr11 30695764 30695867 -120087686 + MIR3 SINE MIR 54 157 -51 526 275 110 0 chr11 30696045 30696227 -120087326 - L2 LINE L2 0 3313 3112 27 29 0 0 chr11 30696871 30696905 -120086648 + AT_rich Low_complexity Low_complexity 1 34 0 2597 215 43 38 chr11 30696921 30697665 -120085888 + Charlie1a DNA MER1_type 1 748 -707 4203 189 58 19 chr11 30697665 30699049 -120084504 - L1MC2 LINE L1 -6 6338 4907 301 257 37 29 chr11 30699057 30699193 -120084360 - L1MC2 LINE L1 -1317 4829 4693 * 7136 32 3 3 chr11 30699189 30700091 -120083462 - L1PA3 LINE L1 0 6155 5254 * 12519 28 5 0 chr11 30700082 30701645 -120081908 + L1PA3 LINE L1 3693 5263 -883 984 253 32 42 chr11 30701645 30702148 -120081405 - L1MC2 LINE L1 -1444 4702 4205 410 216 0 23 chr11 30702148 30702324 -120081229 + (TA)n Simple_repeat Simple_repeat 1 172 0 2756 257 82 4 chr11 30702349 30703381 -120080172 - L1MC2 LINE L1 -1945 4201 3089 1274 236 78 17 chr11 30703402 30703746 -120079807 + MLT1A1 LTR MaLR 1 365 0 1844 215 43 53 chr11 30703748 30704441 -120079112 + Charlie1a DNA MER1_type 767 1452 -3 573 258 63 0 chr11 30704452 30704611 -120078942 - MER58B DNA MER1_type 0 341 173 185 116 0 47 chr11 30705039 30705082 -120078471 + (CAA)n Simple_repeat Simple_repeat 2 42 0 619 243 33 0 chr11 30705340 30705492 -120078061 - MER63A DNA MER1_type -1 209 53 408 238 0 0 chr11 30705833 30705938 -120077615 + (CATATA)n Simple_repeat Simple_repeat 1 105 0 334 273 63 49 chr11 30706037 30706092 -120077461 - L2 LINE L2 -776 2538 2485 1813 154 3 39 chr11 30706092 30706456 -120077097 + L1PA14 LINE L1 5811 6161 0 334 273 63 49 chr11 30706456 30706543 -120077010 - L2 LINE L2 -829 2485 2394 27163 47 1 2 chr11 30706569 30711022 -120072531 + L1PA3 LINE L1 3 4445 -1701 7365 30 8 0 chr11 30711022 30711896 -120071657 + L1PA3 LINE L1 5275 6155 0 273 304 116 7 chr11 30711903 30712041 -120071512 - L2 LINE L2 -940 2374 2222 180 111 0 0 chr11 30712342 30712369 -120071184 + (A)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr11 30712556 30712579 -120070974 + AT_rich Low_complexity Low_complexity 1 23 0 521 243 105 52 chr11 30713235 30713445 -120070108 + MIR SINE MIR 15 235 -27 206 206 29 15 chr11 30714331 30714399 -120069154 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 190 227 45 0 chr11 30714449 30714537 -120069016 + (TATATG)n Simple_repeat Simple_repeat 5 96 0 1363 119 38 17 chr11 30714925 30715160 -120068393 + L1P4 LINE L1 5370 5609 -552 240 257 14 29 chr11 30715627 30715697 -120067856 + GA-rich Low_complexity Low_complexity 4 72 0 347 240 188 0 chr11 30716805 30716901 -120066652 - L2 LINE L2 0 3272 3159 1068 209 15 5 chr11 30717480 30717686 -120065867 - AluJb SINE Alu -18 294 87 181 73 24 49 chr11 30717712 30717753 -120065800 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 589 235 140 17 chr11 30718576 30718755 -120064798 + MIR SINE MIR 28 228 -34 200 228 0 35 chr11 30718804 30718861 -120064692 + GA-rich Low_complexity Low_complexity 6 60 0 251 359 129 6 chr11 30718935 30719105 -120064448 - MIR SINE MIR -55 207 17 284 276 45 21 chr11 30719302 30719419 -120064134 - MIR SINE MIR -94 114 3 189 0 0 0 chr11 30719932 30719953 -120063600 + (TTCC)n Simple_repeat Simple_repeat 1 21 0 651 318 106 42 chr11 30720136 30720608 -120062945 + LTR33 LTR ERVL 12 513 -8 286 273 192 6 chr11 30720693 30720865 -120062688 + L2 LINE L2 2607 2810 -504 844 298 89 50 chr11 30720903 30721306 -120062247 - LTR16C LTR ERVL -3 488 70 296 321 88 22 chr11 30721678 30721815 -120061738 + MIR SINE MIR 117 262 0 19431 158 46 18 chr11 30722790 30730279 -120053274 - L1MA1 LINE L1 -4 7717 16 590 280 40 44 chr11 30730605 30730855 -120052698 + MIR SINE MIR 13 261 -1 399 221 93 43 chr11 30731791 30731931 -120051622 - MLT1H LTR MaLR 0 549 403 240 353 39 10 chr11 30733235 30733337 -120050216 + MLT1J LTR MaLR 94 198 -313 855 55 0 0 chr11 30733354 30733463 -120050090 + (TA)n Simple_repeat Simple_repeat 2 110 0 192 77 0 0 chr11 30733466 30733492 -120050061 + (GA)n Simple_repeat Simple_repeat 2 27 0 737 275 15 25 chr11 30733543 30733743 -120049810 + MLT1J1 LTR MaLR 231 428 -18 450 0 0 0 chr11 30733759 30733809 -120049744 + (TA)n Simple_repeat Simple_repeat 1 50 0 1153 309 55 23 chr11 30734026 30734501 -120049052 - L2 LINE L2 -20 3293 2804 612 270 108 67 chr11 30734510 30734944 -120048609 - LTR16A1 LTR ERVL -4 453 2 669 323 32 42 chr11 30735321 30735516 -120048037 - ERVL LTR ERVL -676 5088 4896 608 215 138 36 chr11 30735516 30735711 -120047842 - MER58C DNA MER1_type 0 215 1 669 323 32 42 chr11 30735711 30735825 -120047728 - ERVL LTR ERVL -868 4896 4782 305 333 0 0 chr11 30736200 30736290 -120047263 - L1MC4 LINE L1 -1339 6703 6614 412 224 43 9 chr11 30736290 30736406 -120047147 - MER53 DNA DNA -69 120 1 284 349 8 31 chr11 30736554 30736683 -120046870 + L2 LINE L2 2946 3071 -201 187 271 57 29 chr11 30738490 30738560 -120044993 + L2 LINE L2 3241 3312 -1 22729 178 25 27 chr11 30738856 30742278 -120041275 + L1PA10 LINE L1 9 3434 -3049 180 77 0 0 chr11 30742278 30742304 -120041249 + (CAA)n Simple_repeat Simple_repeat 3 28 0 22729 178 25 27 chr11 30742304 30743072 -120040481 + L1PA10 LINE L1 3434 4202 -2281 2454 139 0 6 chr11 30743072 30743438 -120040115 + THE1B LTR MaLR 1 364 0 9772 122 37 38 chr11 30743438 30745020 -120038533 + THE1B-int LTR MaLR 1 1580 0 2557 107 28 6 chr11 30745020 30745376 -120038177 + THE1B LTR MaLR 1 364 0 22729 178 25 27 chr11 30745376 30747664 -120035889 + L1PA10 LINE L1 4199 6483 0 200 132 189 0 chr11 30748193 30748246 -120035307 + L2 LINE L2 3201 3263 -9 2507 157 25 0 chr11 30748340 30748741 -120034812 - LTR57 LTR ERVL 0 411 1 230 79 0 26 chr11 30749098 30749136 -120034417 + (CACCAT)n Simple_repeat Simple_repeat 2 38 0 362 318 134 22 chr11 30749137 30749316 -120034237 - MIR SINE MIR -8 254 56 24 32 0 0 chr11 30751986 30752017 -120031536 + AT_rich Low_complexity Low_complexity 1 31 0 5013 171 15 9 chr11 30752017 30753489 -120030064 - L1PA16 LINE L1 -35 6131 4653 3739 220 10 1 chr11 30753485 30754347 -120029206 + L1PA16 LINE L1 3789 4658 -1488 * 283 267 104 0 chr11 30754351 30754439 -120029114 + MIR SINE MIR 50 146 -67 288 257 78 64 chr11 30754758 30754946 -120028607 - MIR SINE MIR -46 216 31 230 265 0 0 chr11 30755146 30755195 -120028358 - MIR SINE MIR -140 122 74 528 129 47 6 chr11 30755294 30755465 -120028088 + (TA)n Simple_repeat Simple_repeat 1 178 0 211 335 13 42 chr11 30755631 30755818 -120027735 + L2 LINE L2 2795 2977 -336 356 288 62 25 chr11 30755864 30756024 -120027529 - MIR SINE MIR -80 182 17 360 342 136 26 chr11 30756479 30756906 -120026647 - L2 LINE L2 -2 3311 2838 337 319 34 0 chr11 30756911 30757030 -120026523 - L2 LINE L2 0 3313 3191 210 275 220 28 chr11 30757066 30757175 -120026378 - L2 LINE L2 -508 2806 2677 1861 178 55 59 chr11 30757787 30758243 -120025310 + L1MB5 LINE L1 5662 6115 -59 25 75 0 0 chr11 30758334 30758387 -120025166 + AT_rich Low_complexity Low_complexity 1 53 0 27 29 0 0 chr11 30758531 30758565 -120024988 + AT_rich Low_complexity Low_complexity 1 34 0 415 331 25 6 chr11 30758814 30758974 -120024579 - MER117 DNA MER1_type -32 165 3 441 0 0 0 chr11 30759794 30759843 -120023710 + (CA)n Simple_repeat Simple_repeat 1 49 0 4531 193 58 46 chr11 30759942 30762046 -120021507 + L1MB1 LINE L1 4010 6142 -26 237 189 158 11 chr11 30762058 30762153 -120021400 + L1ME1 LINE L1 1037 1145 -4968 2737 111 54 5 chr11 30762299 30762722 -120020831 + MLT2A1 LTR ERVL 1 444 0 439 256 34 54 chr11 30762800 30763030 -120020523 + L1M4 LINE L1 1610 1960 -4256 301 221 7 114 chr11 30763037 30763177 -120020376 + L1M4 LINE L1 4645 4769 -1446 11500 231 55 22 chr11 30763178 30768671 -120014882 + L1P4 LINE L1 111 5987 -415 884 194 20 20 chr11 30768673 30768869 -120014684 - MER61A LTR ERV1 -147 196 1 975 199 35 0 chr11 30769080 30769281 -120014272 + L1ME1 LINE L1 1220 1427 -4790 1005 202 54 32 chr11 30769283 30769678 -120013875 + L1ME1 LINE L1 5165 5565 -688 1412 157 17 13 chr11 30769678 30769914 -120013639 + AluSx SINE Alu 63 299 -13 1599 252 47 35 chr11 30769935 30770531 -120013022 + L1ME1 LINE L1 5617 6219 -16 21 36 0 0 chr11 30770789 30770817 -120012736 + AT_rich Low_complexity Low_complexity 1 28 0 297 237 149 35 chr11 30772455 30772569 -120010984 - MLT1L LTR MaLR -488 127 1 232 235 0 0 chr11 30772595 30772646 -120010907 + (CTA)n Simple_repeat Simple_repeat 3 53 0 462 274 0 0 chr11 30773451 30773557 -120009996 - MIR SINE MIR -3 259 154 1170 301 41 12 chr11 30774045 30774460 -120009093 - LTR16A LTR ERVL -6 444 18 197 250 0 67 chr11 30774879 30774939 -120008614 - L3 LINE CR1 -173 1404 1349 252 265 0 48 chr11 30774965 30775048 -120008505 + MER5B DNA MER1_type 21 99 -79 184 264 64 96 chr11 30775277 30775402 -120008151 - L3 LINE CR1 -415 1162 1042 268 256 68 51 chr11 30775664 30775781 -120007772 + L2 LINE L2 3190 3308 -5 1307 231 44 51 chr11 30776479 30776770 -120006783 - MLT1E1 LTR MaLR 0 654 275 1645 196 3 23 chr11 30776770 30777071 -120006482 - AluJo SINE Alu -17 295 1 1307 231 44 51 chr11 30777071 30777243 -120006310 - MLT1E1 LTR MaLR -379 275 103 291 270 151 13 chr11 30777220 30777379 -120006174 - MLT1E LTR MaLR -406 187 7 * 679 254 28 0 chr11 30777700 30777842 -120005711 - MER5A DNA MER1_type -1 188 43 269 345 66 30 chr11 30778639 30778836 -120004717 + MERVL LTR ERVL 3 206 -4790 669 318 60 37 chr11 30779178 30779694 -120003859 + MERVL LTR ERVL 1772 2241 -3244 685 348 63 3 chr11 30779775 30780108 -120003445 - HERVL LTR ERVL -1258 4396 4044 595 309 41 38 chr11 30780474 30780794 -120002759 + LTR16C LTR ERVL 169 489 -2 5081 23 0 2 chr11 30780800 30781415 -120002138 - L1PA4 LINE L1 -756 5390 4777 6520 21 9 0 chr11 30781415 30782176 -120001377 + L1PA4 LINE L1 5382 6151 -4 301 301 71 18 chr11 30782690 30782803 -120000750 - L2 LINE L2 -2 3311 3193 247 267 33 83 chr11 30783221 30783341 -120000212 - L2 LINE L2 -2 3270 3157 1613 185 17 3 chr11 30783341 30783639 -119999914 - AluJb SINE Alu -10 302 1 411 306 16 0 chr11 30783773 30783897 -119999656 + MIR SINE MIR 2 127 -135 5837 94 25 2 chr11 30783900 30785629 -119997924 - L1PA13 LINE L1 -19 6144 4407 230 179 36 0 chr11 30785639 30785695 -119997858 + LTR37A LTR ERV1 369 426 0 202 317 0 24 chr11 30787133 30787215 -119996338 - MIR SINE MIR 0 262 183 276 143 16 48 chr11 30787751 30787814 -119995739 + HERVFH21 LTR ERV1 3421 3481 -3048 457 298 25 26 chr11 30788601 30788806 -119994747 - MER74A LTR ERVL -18 604 339 447 252 128 64 chr11 30789029 30789247 -119994306 - MLT1L LTR MaLR -19 596 365 261 292 22 11 chr11 30789310 30789399 -119994154 - MLT1L LTR MaLR -525 90 1 279 282 58 51 chr11 30790619 30790702 -119992851 - LTR33A LTR ERVL -24 499 413 2110 117 7 13 chr11 30790702 30791001 -119992552 + AluSx SINE Alu 1 297 -15 279 282 58 51 chr11 30791001 30791073 -119992480 - LTR33A LTR ERVL -110 413 343 235 244 37 24 chr11 30791056 30791138 -119992415 - LTR50 LTR ERVL -334 461 379 * 597 224 172 62 chr11 30791387 30791806 -119991747 + MER4C LTR ERV1 1 465 0 525 236 181 20 chr11 30791810 30791998 -119991555 + MER4C-int LTR ERV1 2 158 -6440 207 0 0 0 chr11 30791998 30792021 -119991532 + (A)n Simple_repeat Simple_repeat 1 23 0 525 236 181 20 chr11 30792021 30792121 -119991432 + MER4C-int LTR ERV1 158 429 -6169 656 115 95 54 chr11 30792434 30792582 -119990971 + MER4C-int LTR ERV1 994 1147 -5184 234 319 14 0 chr11 30792636 30792708 -119990845 + tRNA-Glu-GAG tRNA tRNA 3 75 0 360 174 101 46 chr11 30792710 30792819 -119990734 + MER4C-int LTR ERV1 1285 1399 -4932 448 281 27 0 chr11 30793001 30793147 -119990406 + MER4C-int LTR ERV1 1820 1969 -4629 2227 200 69 109 chr11 30793206 30793930 -119989623 + LTR8A LTR ERV1 33 727 0 10668 161 62 56 chr11 30793930 30794258 -119989295 + MER4C-int LTR ERV1 1171 1496 -4835 1756 184 3 13 chr11 30794258 30794562 -119988991 - AluJb SINE Alu -11 301 1 10668 161 62 56 chr11 30794562 30797508 -119986045 + MER4C-int LTR ERV1 1496 5996 -335 913 212 5 0 chr11 30797661 30797850 -119985703 + MER4C-int LTR ERV1 6395 6584 -14 1007 183 58 133 chr11 30797863 30798366 -119985187 + MER4C LTR ERV1 1 465 0 1451 303 113 18 chr11 30798456 30799317 -119984236 + L2 LINE L2 2375 3309 -4 2179 112 13 13 chr11 30799472 30799785 -119983768 + AluSq SINE Alu 1 313 0 189 0 0 0 chr11 30799930 30799951 -119983602 + (T)n Simple_repeat Simple_repeat 1 21 0 1358 189 73 0 chr11 30800059 30800345 -119983208 + Tigger2 DNA MER2_type 2401 2707 -11 296 223 80 18 chr11 30800528 30800640 -119982913 - L1M4 LINE L1 -1496 4650 4532 439 351 32 20 chr11 30800766 30801014 -119982539 + HAL1 LINE L1 153 403 -2104 752 318 92 35 chr11 30802458 30802914 -119980639 + L2 LINE L2 2827 3308 -5 21 57 0 0 chr11 30803128 30803163 -119980390 + AT_rich Low_complexity Low_complexity 1 35 0 252 59 0 0 chr11 30803680 30803714 -119979839 + (CAT)n Simple_repeat Simple_repeat 1 34 0 2269 189 53 24 chr11 30804847 30805391 -119978162 - MER45B DNA AcHobo -1 1039 480 776 211 53 13 chr11 30805391 30805689 -119977864 + L1MB1 LINE L1 5795 6155 -13 5890 103 7 31 chr11 30805703 30807000 -119976553 + L1PA14 LINE L1 4285 5565 -596 1897 143 14 0 chr11 30807000 30807287 -119976266 + AluSx SINE Alu 4 294 -18 5890 103 7 31 chr11 30807287 30807869 -119975684 + L1PA14 LINE L1 5565 6160 -1 221 158 0 18 chr11 30807869 30807920 -119975633 + A-rich Low_complexity Low_complexity 11 60 0 1517 184 0 46 chr11 30807928 30808233 -119975320 + AluJb SINE Alu 6 296 -16 1553 284 72 2 chr11 30808234 30808667 -119974886 - MER45B DNA AcHobo -577 463 1 207 0 0 0 chr11 30808685 30808708 -119974845 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 22000 52 5 5 chr11 30808731 30813717 -119969836 - L1PA5 LINE L1 -4 6150 1041 7375 104 3 5 chr11 30813719 30814760 -119968793 + L1PA5 LINE L1 13 1051 -5095 197 337 11 103 chr11 30815484 30815659 -119967894 - MIR SINE MIR -61 201 43 537 92 0 0 chr11 30816232 30816308 -119967245 + (GA)n Simple_repeat Simple_repeat 1 76 0 195 312 34 34 chr11 30816936 30817064 -119966489 - L2 LINE L2 -334 2979 2852 2759 90 11 13 chr11 30817240 30817751 -119965802 - L1PA7 LINE L1 -502 5652 5143 3492 100 0 6 chr11 30817751 30818246 -119965307 + L1PA7 LINE L1 5656 6151 -3 1785 149 8 67 chr11 30818622 30818997 -119964556 + THE1A LTR MaLR 1 353 -2 11369 105 4 1 chr11 30818999 30820574 -119962979 + THE1A-int LTR MaLR 1 1580 0 1693 147 21 97 chr11 30820574 30820956 -119962597 + THE1B LTR MaLR 1 353 -11 2264 122 34 3 chr11 30821025 30821377 -119962176 + THE1B LTR MaLR 1 363 -1 771 301 59 23 chr11 30821425 30821841 -119961712 - LTR33 LTR ERVL -2 519 12 747 343 62 82 chr11 30822317 30822497 -119961056 - L2 LINE L2 -12 3260 3078 1634 135 81 4 chr11 30822497 30822780 -119960773 + AluSx SINE Alu 5 307 0 747 343 62 82 chr11 30822780 30823874 -119959679 - L2 LINE L2 -194 3078 1990 336 207 17 52 chr11 30824342 30824516 -119959037 + (TA)n Simple_repeat Simple_repeat 1 168 0 421 285 8 41 chr11 30825113 30825236 -119958317 + L2 LINE L2 3151 3269 -3 203 279 106 19 chr11 30825508 30825612 -119957941 - MIR SINE MIR -16 246 134 246 273 91 32 chr11 30825629 30825783 -119957770 - L2 LINE L2 -2 3311 3149 5627 140 96 19 chr11 30825953 30826776 -119956777 + Tigger3b DNA MER2_type 3 931 -2097 203 61 30 0 chr11 30826776 30826809 -119956744 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 5627 140 96 19 chr11 30826809 30827067 -119956486 + Tigger3b DNA MER2_type 931 1168 -63 478 214 31 0 chr11 30827148 30827246 -119956307 + Tigger3b DNA MER2_type 1129 1229 -2 271 295 49 0 chr11 30827249 30827310 -119956243 - L2 LINE L2 -8 3264 3201 210 298 0 0 chr11 30828272 30828329 -119955224 + MIR3 SINE MIR 151 207 -1 23 0 9 0 chr11 30828616 30828679 -119954874 + AT_rich Low_complexity Low_complexity 1 23 0 12183 212 23 8 chr11 30829022 30832758 -119950795 + L1PA15 LINE L1 2373 6163 -2 506 278 4 0 chr11 30832975 30833237 -119950316 + (TA)n Simple_repeat Simple_repeat 1 263 0 9065 203 54 19 chr11 30833717 30840046 -119943507 - L1PB1 LINE L1 -1 6866 31 2595 99 6 0 chr11 30840504 30840857 -119942696 + THE1A LTR MaLR 1 355 0 11400 98 10 5 chr11 30840859 30842429 -119941124 + THE1A-int LTR MaLR 3 1580 0 2371 126 3 6 chr11 30842429 30842785 -119940768 + THE1A LTR MaLR 1 355 0 2850 106 25 7 chr11 30842808 30843250 -119940303 + L1PA13 LINE L1 5714 6163 0 30 45 0 0 chr11 30843250 30843294 -119940259 + AT_rich Low_complexity Low_complexity 1 44 0 566 109 277 0 chr11 30843296 30843415 -119940138 + L1PA13 LINE L1 6001 6152 -11 308 306 86 50 chr11 30843551 30844297 -119939256 + L1MEc LINE L1 1039 1811 -4585 1371 283 43 48 chr11 30844539 30845558 -119937995 + L1M4 LINE L1 3339 4352 -1794 1319 158 41 12 chr11 30846664 30846910 -119936643 - Tigger2 DNA MER2_type 0 2718 2466 340 153 0 69 chr11 30846912 30846965 -119936588 + Tigger2 DNA MER2_type 3 51 -2667 1449 212 7 26 chr11 30846965 30847267 -119936286 - AluJo SINE Alu -16 296 1 340 153 0 69 chr11 30847267 30847285 -119936268 + Tigger2 DNA MER2_type 51 69 -2649 1710 92 66 82 chr11 30847299 30847603 -119935950 + AluY SINE Alu 3 301 -10 1777 194 57 16 chr11 30847625 30848012 -119935541 + Tigger2 DNA MER2_type 2315 2717 -1 981 136 17 57 chr11 30848021 30848198 -119935355 - Tigger2a DNA MER2_type -263 171 2 23 0 0 0 chr11 30848747 30848770 -119934783 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr11 30848806 30848834 -119934719 + AT_rich Low_complexity Low_complexity 1 28 0 533 323 132 23 chr11 30849052 30849553 -119934000 - L2 LINE L2 -1 3312 2729 483 299 27 18 chr11 30849559 30849783 -119933770 + L1ME LINE L1 5556 5781 -340 266 368 98 10 chr11 30850438 30850631 -119932922 - MIR SINE MIR -7 255 46 1993 147 7 0 chr11 30850792 30851091 -119932462 - AluSx SINE Alu -7 305 5 2706 109 23 18 chr11 30851622 30852064 -119931489 + MLT2A1 LTR ERVL 1 444 0 221 303 13 40 chr11 30852279 30852355 -119931198 - L3 LINE CR1 -7 1570 1497 357 310 58 41 chr11 30852428 30852599 -119930954 - MIR SINE MIR -74 188 15 257 357 24 0 chr11 30853016 30853100 -119930453 + LTR16C LTR ERVL 136 221 -270 380 160 100 40 chr11 30853100 30853200 -119930353 + LTR16C LTR ERVL 385 490 -1 239 54 27 0 chr11 30854247 30854284 -119929269 + (TG)n Simple_repeat Simple_repeat 1 38 0 325 303 149 11 chr11 30854397 30854585 -119928968 - MIR SINE MIR -34 228 15 2240 100 7 7 chr11 30855482 30855791 -119927762 + AluSq SINE Alu 1 309 -4 22 0 0 0 chr11 30856415 30856437 -119927116 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr11 30856711 30856739 -119926814 + AT_rich Low_complexity Low_complexity 1 28 0 420 311 8 98 chr11 30857225 30857460 -119926093 + L2 LINE L2 2829 3042 -230 23 33 0 0 chr11 30858125 30858155 -119925398 + AT_rich Low_complexity Low_complexity 1 30 0 4615 130 12 7 chr11 30858631 30859516 -119924037 + L1PA16 LINE L1 5097 5982 -184 1743 173 16 16 chr11 30859633 30859945 -119923608 - AluSx SINE Alu 0 312 1 1096 190 0 51 chr11 30861338 30861575 -119921978 + AluJb SINE Alu 84 308 -4 646 194 8 8 chr11 30861914 30862038 -119921515 - MLT1A1 LTR MaLR -239 126 3 333 235 0 0 chr11 30862376 30862457 -119921096 + MER103 DNA DNA 8 88 -78 252 0 0 0 chr11 30862869 30862897 -119920656 + (CA)n Simple_repeat Simple_repeat 1 28 0 244 162 0 0 chr11 30863906 30863943 -119919610 + MER53 DNA DNA 1 37 -152 827 273 72 37 chr11 30864368 30864913 -119918640 - L1ME4a LINE L1 -11 6110 5547 2119 91 35 0 chr11 30865254 30865540 -119918013 - AluSg1 SINE Alu -13 296 1 273 89 0 0 chr11 30865691 30865736 -119917817 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 1566 179 3 28 chr11 30865736 30866021 -119917532 - AluJb SINE Alu -32 280 3 224 301 55 0 chr11 30866401 30866474 -119917079 - MIR SINE MIR 0 262 186 1303 254 98 93 chr11 30866484 30867119 -119916434 + L2 LINE L2 2166 2803 -511 368 258 21 86 chr11 30867118 30867304 -119916249 + L2 LINE L2 3139 3312 -1 * 256 307 40 0 chr11 30867367 30867442 -119916111 - MIR SINE MIR -169 93 16 5642 140 72 39 chr11 30867466 30868692 -119914861 + MER11A LTR ERVK 1 1266 0 460 150 12 12 chr11 30868725 30868805 -119914748 + MLT1I LTR MaLR 62 141 -268 347 254 148 49 chr11 30868874 30869016 -119914537 + MLT1I LTR MaLR 254 409 0 997 152 30 18 chr11 30869209 30869373 -119914180 - AluJo SINE Alu -146 166 1 2071 161 77 17 chr11 30869526 30869930 -119913623 + MSTA LTR MaLR 1 428 0 561 278 67 0 chr11 30870048 30870257 -119913296 - L1M4 LINE L1 -1917 4229 4007 342 0 0 0 chr11 30870488 30870526 -119913027 + (TG)n Simple_repeat Simple_repeat 2 39 0 280 216 54 14 chr11 30870979 30871053 -119912500 - MLT1K LTR MaLR -5 583 507 1050 297 103 24 chr11 30872212 30872738 -119910815 - L2 LINE L2 -249 3064 2505 28 0 0 0 chr11 30872782 30872810 -119910743 + AT_rich Low_complexity Low_complexity 1 28 0 221 342 17 43 chr11 30872863 30872980 -119910573 - L2 LINE L2 -902 2412 2299 1857 194 80 39 chr11 30873295 30873780 -119909773 - MLT1D LTR MaLR 0 505 1 2800 88 44 14 chr11 30874377 30874808 -119908745 - MLT2A1 LTR ERVL 0 444 1 269 286 173 38 chr11 30874946 30875079 -119908474 + L2 LINE L2 3121 3271 -1 921 241 62 21 chr11 30875436 30875677 -119907876 - MIR SINE MIR 0 262 12 770 236 62 0 chr11 30875877 30876055 -119907498 + MER5A DNA MER1_type 1 189 0 1013 282 50 9 chr11 30876067 30876390 -119907163 + MER58B DNA MER1_type 6 341 0 245 287 32 32 chr11 30876436 30876530 -119907023 + MER5B DNA MER1_type 26 119 -59 374 305 44 35 chr11 30876613 30876816 -119906737 - MIR SINE MIR -56 206 2 447 183 66 124 chr11 30877942 30878079 -119905474 + MER20 DNA MER1_type 1 129 -90 3331 142 21 20 chr11 30878111 30878604 -119904949 - L1MA8 LINE L1 -19 6272 5776 185 62 0 31 chr11 30878604 30878636 -119904917 + (TA)n Simple_repeat Simple_repeat 1 31 0 3331 142 21 20 chr11 30878636 30878746 -119904807 - L1MA8 LINE L1 -515 5776 5668 491 184 20 10 chr11 30878746 30878844 -119904709 + MER20 DNA MER1_type 121 219 0 413 289 72 7 chr11 30879052 30879204 -119904349 + MIR SINE MIR 33 194 -68 234 322 185 19 chr11 30879823 30880034 -119903519 + MIR SINE MIR 1 246 -16 474 347 90 12 chr11 30880137 30880471 -119903082 + L2 LINE L2 2499 2858 -456 361 333 110 18 chr11 30881144 30881313 -119902240 + MIR SINE MIR 1 198 -64 514 156 272 72 chr11 30881313 30881493 -119902060 - MER20 DNA MER1_type 0 219 4 361 333 110 18 chr11 30881493 30881551 -119902002 + MIR SINE MIR 198 249 -13 1255 273 50 70 chr11 30882963 30883520 -119900033 + MER77 LTR ERV1 56 601 -4 240 238 0 0 chr11 30884696 30884759 -119898794 + (TA)n Simple_repeat Simple_repeat 2 64 0 258 107 54 0 chr11 30885213 30885269 -119898284 + GA-rich Low_complexity Low_complexity 3 61 0 577 304 33 19 chr11 30885405 30885619 -119897934 - MIR SINE MIR -14 248 32 25 0 0 0 chr11 30885670 30885695 -119897858 + AT_rich Low_complexity Low_complexity 1 25 0 1619 117 80 8 chr11 30885885 30886134 -119897419 + AluSg SINE Alu 25 291 -19 437 274 9 0 chr11 30886741 30886847 -119896706 + MER94 DNA DNA 13 119 -15 1449 313 66 42 chr11 30887748 30888615 -119894938 - L2 LINE L2 -163 3150 2263 703 379 75 7 chr11 30888698 30889274 -119894279 + L2 LINE L2 1730 2344 -970 270 176 0 0 chr11 30889298 30889349 -119894204 + (CA)n Simple_repeat Simple_repeat 2 52 0 375 277 73 23 chr11 30890047 30890224 -119893329 + MER112 DNA MER1_type 66 251 -9 207 354 49 12 chr11 30891057 30891139 -119892414 - MIR SINE MIR -155 107 23 2093 136 0 13 chr11 30891225 30891535 -119892018 + AluSx SINE Alu 1 306 -6 24497 154 16 15 chr11 30891670 30897187 -119886366 - L1P3 LINE L1 -877 5584 3 273 301 12 110 chr11 30897445 30897540 -119886013 + L2 LINE L2 2692 2764 -550 2257 118 0 0 chr11 30897540 30897845 -119885708 + AluY SINE Alu 1 305 -6 273 301 12 110 chr11 30897845 30897922 -119885631 + L2 LINE L2 2764 2847 -467 181 0 33 33 chr11 30897937 30897967 -119885586 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 289 255 163 13 chr11 30897974 30898127 -119885426 - AluYb8 SINE Alu -27 281 106 1045 127 0 117 chr11 30898369 30898582 -119884971 - AluSg SINE Alu -122 188 1 416 288 44 12 chr11 30898589 30898749 -119884804 + L2 LINE L2 3119 3283 -30 281 26 26 0 chr11 30900893 30900931 -119882622 + (TG)n Simple_repeat Simple_repeat 2 40 0 210 208 0 0 chr11 30901031 30901079 -119882474 + (TA)n Simple_repeat Simple_repeat 2 49 0 21 0 0 0 chr11 30901406 30901427 -119882126 + AT_rich Low_complexity Low_complexity 1 21 0 3052 162 30 25 chr11 30901616 30902245 -119881308 - L1MB3 LINE L1 -1 6182 5551 1515 180 46 3 chr11 30902403 30902687 -119880866 - MER46B DNA MER2_type -3 233 63 1310 247 184 43 chr11 30902770 30903276 -119880277 - MLT1G1 LTR MaLR -18 577 1 964 299 110 36 chr11 30903314 30903379 -119880174 - L2 LINE L2 -1 3312 3253 350 42 21 0 chr11 30903379 30903427 -119880126 + (CA)n Simple_repeat Simple_repeat 2 50 0 964 299 110 36 chr11 30903427 30903833 -119879720 - L2 LINE L2 -60 3253 2806 5321 263 70 18 chr11 30904573 30904657 -119878896 - L1PBb LINE L1 -2563 4285 4207 207 0 0 0 chr11 30904657 30904680 -119878873 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5321 263 70 18 chr11 30904680 30907431 -119876122 - L1PBb LINE L1 -2641 4207 1016 307 291 53 102 chr11 30907616 30907901 -119875652 - L1PBb LINE L1 -5782 1067 797 186 209 0 0 chr11 30908834 30908877 -119874676 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 229 286 105 40 chr11 30908944 30909100 -119874453 + MIR3 SINE MIR 29 193 -15 458 347 6 6 chr11 30909172 30909339 -119874214 + MIR SINE MIR 86 252 -10 976 282 24 38 chr11 30910063 30910403 -119873150 - MER102b DNA MER1_type -6 335 1 207 381 75 14 chr11 30910579 30910726 -119872827 - L2 LINE L2 0 3272 3117 236 289 70 26 chr11 30912757 30912871 -119870682 + MLT1L LTR MaLR 381 499 -116 1755 162 7 0 chr11 30912954 30913225 -119870328 + AluJo SINE Alu 3 275 -37 252 0 0 0 chr11 30913236 30913264 -119870289 + (CA)n Simple_repeat Simple_repeat 2 29 0 2832 35 6 0 chr11 30913423 30913791 -119869762 + L1PA3 LINE L1 5795 6164 0 369 109 0 0 chr11 30914043 30914054 -119869499 + (TG)n Simple_repeat Simple_repeat 1 66 0 369 109 0 0 chr11 30914054 30914109 -119869444 + (TG)n Simple_repeat Simple_repeat 2 56 0 2337 81 3 3 chr11 30915163 30915471 -119868082 - AluY SINE Alu -3 308 1 1565 175 0 74 chr11 30916038 30916375 -119867178 - AluJo SINE Alu 0 312 1 235 280 7 77 chr11 30917038 30917181 -119866372 - MIR SINE MIR -12 250 118 925 159 26 91 chr11 30917846 30918078 -119865475 - MER20 DNA MER1_type -1 218 2 2020 128 3 0 chr11 30918152 30918493 -119865060 - AluSc SINE Alu 0 309 1 186 211 0 26 chr11 30918551 30918589 -119864964 - L2 LINE L2 -16 3256 3220 1486 250 71 62 chr11 30919637 30920223 -119863330 + MLT1G LTR MaLR 1 590 0 1355 191 57 14 chr11 30920715 30920997 -119862556 + MLT2C1 LTR ERVL 56 349 -48 201 236 36 0 chr11 30920997 30921052 -119862501 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 201 154 0 0 chr11 30921069 30921108 -119862445 + (TG)n Simple_repeat Simple_repeat 2 40 0 223 140 70 0 chr11 30921155 30921212 -119862341 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 1570 196 16 53 chr11 30923214 30923591 -119859962 + MLT1A1 LTR MaLR 3 365 0 35 63 0 0 chr11 30924408 30924471 -119859082 + AT_rich Low_complexity Low_complexity 1 63 0 404 292 57 67 chr11 30924619 30925023 -119858530 - L1ME4a LINE L1 -226 5895 5496 243 125 0 0 chr11 30926644 30926684 -119856869 + (TG)n Simple_repeat Simple_repeat 1 40 0 213 39 0 0 chr11 30928875 30928901 -119854652 + (CA)n Simple_repeat Simple_repeat 2 27 0 43 47 0 0 chr11 30929131 30929195 -119854358 + GC_rich Low_complexity Low_complexity 1 64 0 2609 219 27 19 chr11 30929426 30930754 -119852799 + L1PA15-16 LINE L1 1934 3447 -3402 31975 38 3 0 chr11 30930874 30934787 -119848766 - L1P LINE L1 -1492 4654 730 7506 27 2 0 chr11 30934889 30936604 -119846949 + L1PA3 LINE L1 4478 6172 0 404 261 124 40 chr11 30936645 30937169 -119846384 + L1M4 LINE L1 2876 3443 -2703 30185 34 35 0 chr11 30937462 30941202 -119842351 - L1P LINE L1 -1761 4385 516 727 311 31 15 chr11 30942011 30942271 -119841282 + MLT1L LTR MaLR 350 613 -2 922 222 43 30 chr11 30942281 30942511 -119841042 + MIR SINE MIR 15 247 -15 375 333 0 0 chr11 30942554 30942656 -119840897 - MIR SINE MIR -69 139 38 19455 35 1 0 chr11 30942820 30945968 -119837585 - L1PA4 LINE L1 -2 6153 3006 1626 40 0 0 chr11 30945968 30946167 -119837386 - L1P LINE L1 -1397 4749 4551 * 19612 45 1 2 chr11 30946165 30948592 -119834961 - L1PA4 LINE L1 -3145 3001 577 193 301 87 29 chr11 30949338 30949441 -119834112 + MER5B DNA MER1_type 2 110 -68 245 246 0 18 chr11 30949359 30949416 -119834137 - MER5A DNA MER1_type -25 164 109 241 365 28 47 chr11 30949595 30949806 -119833747 + L2 LINE L2 2895 3101 -212 637 267 120 10 chr11 30949960 30950252 -119833301 - L1M4b LINE L1 -4864 2083 1760 22 0 0 0 chr11 30950266 30950288 -119833265 + AT_rich Low_complexity Low_complexity 1 22 0 463 243 95 18 chr11 30951570 30951808 -119831745 - L1M4b LINE L1 -6552 307 4 743 241 156 56 chr11 30953801 30954141 -119829412 + MLT1A2 LTR MaLR 1 374 0 249 325 39 13 chr11 30954145 30954222 -119829331 + MIR SINE MIR 34 112 -150 2696 206 20 5 chr11 30954576 30955167 -119828386 + L1MA8 LINE L1 5687 6286 -5 939 144 0 0 chr11 30955316 30955455 -119828098 + FLAM_C SINE Alu 1 139 -4 307 335 72 20 chr11 30955575 30955727 -119827826 + L2 LINE L2 2787 2946 -368 330 287 196 50 chr11 30955802 30956263 -119827290 - L2 LINE L2 -1 3312 2661 854 242 27 27 chr11 30956263 30956482 -119827071 - MER20 DNA MER1_type 0 219 1 330 287 196 50 chr11 30956482 30956505 -119827048 - L2 LINE L2 -652 2661 2643 2052 192 0 6 chr11 30956608 30956967 -119826586 + MLT1A1 LTR MaLR 1 357 -8 247 338 162 56 chr11 30957831 30958171 -119825382 - L2 LINE L2 0 3272 2897 429 284 66 69 chr11 30959838 30960127 -119823426 - L1ME4a LINE L1 -188 5933 5646 1288 285 99 8 chr11 30960171 30960554 -119822999 + LTR16C LTR ERVL 74 491 0 1136 228 0 25 chr11 30960555 30960840 -119822713 + L1MA4A LINE L1 5555 5832 -471 4804 33 7 0 chr11 30960584 30961158 -119822395 + L1PA4 LINE L1 5577 6154 -1 3227 72 12 2 chr11 30962431 30962859 -119820694 - L1PA7 LINE L1 -13 6141 5710 4376 88 12 5 chr11 30962860 30963499 -119820054 + L1P LINE L1 4740 5383 -763 775 291 43 4 chr11 30963718 30963952 -119819601 - MIR SINE MIR -13 249 7 23 78 0 0 chr11 30963966 30964017 -119819536 + AT_rich Low_complexity Low_complexity 1 51 0 368 298 53 18 chr11 30964272 30964443 -119819110 + L1ME LINE L1 5599 5775 -346 3254 189 51 58 chr11 30964518 30965390 -119818163 + L1MA9 LINE L1 4918 5767 -545 216 97 0 0 chr11 30965390 30965421 -119818132 + (CA)n Simple_repeat Simple_repeat 1 31 0 3254 189 51 58 chr11 30965421 30965764 -119817789 + L1MA9 LINE L1 5767 6111 -201 8521 142 28 14 chr11 30965765 30966168 -119817385 + Tigger2 DNA MER2_type 2 398 -2320 2884 36 39 0 chr11 30966168 30966524 -119817029 + L1PA4 LINE L1 5782 6151 -4 8521 142 28 14 chr11 30966524 30967569 -119815984 + Tigger2 DNA MER2_type 398 1469 -1249 195 42 0 0 chr11 30967584 30967608 -119815945 + (A)n Simple_repeat Simple_repeat 1 24 0 376 117 12 31 chr11 30967610 30967696 -119815857 + L1PA8 LINE L1 2132 2214 -4575 274 77 0 0 chr11 30967694 30967733 -119815820 - L1PA13 LINE L1 -4512 2275 2237 * 19391 153 23 25 chr11 30967873 30971487 -119812066 + L1PA8 LINE L1 2306 5935 -890 2614 70 75 0 chr11 30971487 30971844 -119811709 + L1PA8 LINE L1 6433 6817 -6 19391 153 23 25 chr11 30971844 30972139 -119811414 + L1PA8 LINE L1 5935 6229 -596 2429 116 60 3 chr11 30972139 30972520 -119811033 + MLT2A1 LTR ERVL 1 403 -41 1128 188 62 23 chr11 30972529 30972785 -119810768 + Tigger2 DNA MER2_type 2452 2717 -1 874 196 13 36 chr11 30972790 30973014 -119810539 + L1MA10 LINE L1 6114 6332 -2 360 343 96 20 chr11 30974500 30974751 -119808802 - L3 LINE CR1 -327 1250 981 357 24 0 0 chr11 30974755 30974797 -119808756 + (TG)n Simple_repeat Simple_repeat 2 43 0 334 312 165 0 chr11 30974879 30975049 -119808504 - MIR SINE MIR -30 232 35 335 333 94 42 chr11 30975826 30976018 -119807535 + MIR SINE MIR 11 212 -50 1439 279 61 10 chr11 30978134 30978529 -119805024 - LTR16C LTR ERVL -1 490 76 192 349 72 0 chr11 30978600 30978683 -119804870 + MIR3 SINE MIR 66 154 -54 1689 196 0 3 chr11 30978762 30979053 -119804500 + AluJo SINE Alu 1 290 -22 437 284 21 34 chr11 30979610 30979763 -119803790 - MIR3 SINE MIR -67 141 8 567 314 13 26 chr11 30980632 30980858 -119802695 - MIR SINE MIR 0 262 40 1674 168 45 10 chr11 30981320 30981611 -119801942 + AluJb SINE Alu 1 301 -11 498 33 0 0 chr11 30981611 30981671 -119801882 + (TG)n Simple_repeat Simple_repeat 1 60 0 1517 213 82 42 chr11 30981808 30982282 -119801271 + MLT1D LTR MaLR 13 505 0 2313 96 0 0 chr11 30982617 30982910 -119800643 - AluSc SINE Alu -16 293 1 231 324 155 7 chr11 30983555 30983697 -119799856 + MIR SINE MIR 97 259 -3 184 270 95 14 chr11 30983735 30983809 -119799744 - L2 LINE L2 -1079 2235 2156 419 260 77 99 chr11 30983862 30984044 -119799509 + MLT1G1 LTR MaLR 1 152 -438 2259 105 0 6 chr11 30984044 30984357 -119799196 + AluSx SINE Alu 1 311 -1 419 260 77 99 chr11 30984357 30984450 -119799103 + MLT1G1 LTR MaLR 152 246 -344 574 247 5 63 chr11 30984504 30984694 -119798859 + MLT1G1-int LTR MaLR 424 602 -769 269 269 39 67 chr11 30985273 30985377 -119798176 + MLT1G1-int LTR MaLR 1038 1138 -233 906 252 133 65 chr11 30985645 30986201 -119797352 + MLT1G1 LTR MaLR 1 594 -1 240 367 44 25 chr11 30986571 30986729 -119796824 - MIR SINE MIR -28 234 74 316 285 62 7 chr11 30987562 30987706 -119795847 - MER103 DNA DNA 0 166 15 343 327 31 93 chr11 30988019 30988245 -119795308 + MIR SINE MIR 1 212 -50 1302 181 60 81 chr11 30988814 30989196 -119794357 + MLT1A2 LTR MaLR 1 374 0 22 0 0 0 chr11 30991862 30991884 -119791669 + AT_rich Low_complexity Low_complexity 1 22 0 244 206 22 120 chr11 30992704 30992777 -119790776 + MIR SINE MIR 20 84 -178 2097 111 156 24 chr11 30992777 30993155 -119790398 + MSTA LTR MaLR 1 428 0 244 206 22 120 chr11 30993155 30993173 -119790380 + MIR SINE MIR 84 102 -160 2572 151 87 12 chr11 30993226 30993744 -119789809 + L1MB4 LINE L1 5623 6179 -1 1786 47 5 0 chr11 30994214 30994427 -119789126 - AluY SINE Alu -13 298 85 377 343 0 0 chr11 30994695 30994838 -119788715 + (TA)n Simple_repeat Simple_repeat 1 143 0 266 336 116 41 chr11 30995004 30995489 -119788064 + L2 LINE L2 1884 2404 -910 1254 191 75 71 chr11 30995646 30996180 -119787373 + pTR5 LTR ERV1 741 1344 -1094 4443 122 27 6 chr11 30996196 30996866 -119786687 + LTR12 LTR ERV1 5 688 0 1342 211 171 43 chr11 30997587 30998008 -119785545 - MLT1D LTR MaLR -3 502 28 27 0 0 0 chr11 30998525 30998552 -119785001 + AT_rich Low_complexity Low_complexity 1 27 0 2391 170 85 7 chr11 30998904 30999363 -119784190 + LTR42 LTR ERVL 1 495 0 198 0 0 0 chr11 30999775 30999797 -119783756 + (A)n Simple_repeat Simple_repeat 1 22 0 34 0 0 0 chr11 31000079 31000113 -119783440 + AT_rich Low_complexity Low_complexity 1 34 0 326 259 49 0 chr11 31000575 31000656 -119782897 + L1MC4 LINE L1 6619 6703 -1339 243 0 0 0 chr11 31000656 31000683 -119782870 + (TA)n Simple_repeat Simple_repeat 1 27 0 218 277 15 0 chr11 31001137 31001202 -119782351 + CT-rich Low_complexity Low_complexity 1 66 0 361 340 44 48 chr11 31001414 31001664 -119781889 + MIR SINE MIR 12 260 -2 21 36 0 0 chr11 31003248 31003276 -119780277 + AT_rich Low_complexity Low_complexity 1 28 0 284 305 16 56 chr11 31003298 31003547 -119780006 + L1ME LINE L1 5512 5750 -371 662 219 31 12 chr11 31003684 31003844 -119779709 + MER106B DNA MER1_type 896 1058 -1 207 315 139 0 chr11 31003931 31004039 -119779514 - MIR SINE MIR -31 231 109 216 0 0 0 chr11 31004183 31004207 -119779346 + (CA)n Simple_repeat Simple_repeat 2 25 0 209 307 27 27 chr11 31004411 31004486 -119779067 + MIR SINE MIR 49 123 -139 450 332 70 20 chr11 31005595 31005794 -119777759 - MIR SINE MIR -31 231 23 225 0 0 0 chr11 31006167 31006192 -119777361 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2240 87 0 0 chr11 31006192 31006469 -119777084 - AluY SINE Alu -33 278 2 642 209 9 0 chr11 31006772 31006887 -119776666 + AluSq/x SINE Alu 1 116 -196 239 41 82 0 chr11 31006887 31006936 -119776617 + GA-rich Low_complexity Low_complexity 3 55 0 1777 211 90 75 chr11 31006988 31007534 -119776019 + MLT2B3 LTR ERVL 1 554 0 210 277 15 0 chr11 31007664 31007729 -119775824 + MIR SINE MIR 73 138 -124 1660 184 63 166 chr11 31007846 31008651 -119774902 - LTR8A LTR ERV1 -4 723 2 739 317 114 30 chr11 31008754 31009218 -119774335 - L2 LINE L2 0 3313 2811 2009 150 0 0 chr11 31009470 31009757 -119773796 + AluSx SINE Alu 1 287 -25 320 309 97 43 chr11 31009905 31010112 -119773441 + L1ME LINE L1 5285 5502 -619 18471 198 40 20 chr11 31010272 31013816 -119769737 + L1P4 LINE L1 2 3474 -3340 1804 127 67 11 chr11 31013816 31014099 -119769454 + AluSq SINE Alu 1 299 -14 18471 198 40 20 chr11 31014099 31014692 -119768861 + L1P4 LINE L1 3474 4054 -2760 258 32 0 0 chr11 31014692 31014723 -119768830 + (CA)n Simple_repeat Simple_repeat 2 32 0 18471 198 40 20 chr11 31014723 31016571 -119766982 + L1P4 LINE L1 4054 6160 -654 1547 175 35 7 chr11 31016617 31016903 -119766650 + AluJb SINE Alu 1 294 -18 221 255 0 0 chr11 31018314 31018361 -119765192 + CT-rich Low_complexity Low_complexity 2 48 0 291 334 65 51 chr11 31018630 31018841 -119764712 - MIR SINE MIR -50 212 5 22 56 0 0 chr11 31019099 31019135 -119764418 + AT_rich Low_complexity Low_complexity 1 36 0 477 0 0 0 chr11 31019491 31019544 -119764009 + (CA)n Simple_repeat Simple_repeat 2 54 0 551 313 7 0 chr11 31021383 31021530 -119762023 - MIR3 SINE MIR -7 201 54 221 315 27 0 chr11 31021879 31021952 -119761601 - MIR SINE MIR -150 112 38 275 333 0 0 chr11 31022355 31022424 -119761129 - L2 LINE L2 -17 3255 3187 21 0 0 0 chr11 31022731 31022752 -119760801 + AT_rich Low_complexity Low_complexity 1 21 0 252 300 90 0 chr11 31023319 31023419 -119760134 + L2 LINE L2 3161 3269 -3 198 0 0 0 chr11 31023497 31023519 -119760034 + (T)n Simple_repeat Simple_repeat 1 22 0 234 246 87 29 chr11 31024364 31024433 -119759120 - MIR SINE MIR -113 149 77 1065 303 98 23 chr11 31024433 31024911 -119758642 - LTR33 LTR ERVL 0 521 8 265 287 139 26 chr11 31025336 31025451 -119758102 - MER117 DNA MER1_type -31 166 39 603 326 98 45 chr11 31026077 31026599 -119756954 + L2 LINE L2 2765 3312 -1 242 274 68 48 chr11 31026711 31026857 -119756696 - MIR SINE MIR 0 262 114 302 331 45 32 chr11 31026994 31027151 -119756402 + MIR3 SINE MIR 3 161 -47 192 325 38 25 chr11 31027625 31027705 -119755848 + MIR3 SINE MIR 123 203 -5 45 29 0 14 chr11 31027910 31027942 -119755611 + AT_rich Low_complexity Low_complexity 1 32 -37 1288 137 18 171 chr11 31027942 31028270 -119755283 - AluJo SINE Alu -30 282 5 45 29 0 14 chr11 31028270 31028307 -119755246 + AT_rich Low_complexity Low_complexity 32 69 0 2591 52 0 0 chr11 31029078 31029386 -119754167 - AluY SINE Alu -3 308 1 21 0 0 0 chr11 31029388 31029409 -119754144 + AT_rich Low_complexity Low_complexity 1 21 0 303 279 91 39 chr11 31029507 31029661 -119753892 - L2 LINE L2 0 3313 3152 366 259 58 29 chr11 31030079 31030218 -119753335 - MER117 DNA MER1_type -40 157 15 258 346 110 0 chr11 31031521 31031648 -119751905 - MIR SINE MIR -74 188 48 734 299 40 26 chr11 31031888 31032236 -119751317 + L1MC/D LINE L1 5418 5770 -2038 181 342 139 30 chr11 31032551 31032946 -119750607 + L2 LINE L2 2299 2736 -578 860 96 0 16 chr11 31033430 31033555 -119749998 - LTR7 LTR ERV1 -327 123 1 * 1110 92 49 22 chr11 31033555 31033731 -119749822 + LTR7 LTR ERV1 268 448 -2 13856 115 17 26 chr11 31033733 31034370 -119749183 + HERVH LTR ERV1 1 642 -7071 2803 26 0 0 chr11 31034370 31034683 -119748870 - AluYb8 SINE Alu -5 313 1 13856 115 17 26 chr11 31034683 31036751 -119746802 + HERVH LTR ERV1 642 2995 -4718 865 143 27 0 chr11 31036730 31036877 -119746676 + HERVH LTR ERV1 3140 3290 -4423 * 2342 140 2 18 chr11 31036867 31037267 -119746286 + HERVH LTR ERV1 3492 3885 -3828 651 291 23 45 chr11 31038061 31038157 -119745396 + MIR SINE MIR 4 101 -161 2156 103 86 12 chr11 31038157 31038496 -119745057 + THE1B LTR MaLR 1 364 0 651 291 23 45 chr11 31038496 31038664 -119744889 + MIR SINE MIR 101 262 0 344 181 14 0 chr11 31041857 31041929 -119741624 + MER5A DNA MER1_type 28 100 -89 378 240 91 0 chr11 31042160 31042281 -119741272 - MER103 DNA DNA -16 150 19 316 206 11 11 chr11 31042358 31042450 -119741103 + (TA)n Simple_repeat Simple_repeat 2 93 0 1898 143 50 28 chr11 31042870 31043234 -119740319 - THE1C LTR MaLR 0 375 4 192 254 0 0 chr11 31044278 31044337 -119739216 + (TA)n Simple_repeat Simple_repeat 2 60 0 256 180 0 0 chr11 31044337 31044387 -119739166 - L1MC4 LINE L1 -1339 6703 6654 369 352 38 19 chr11 31045452 31045665 -119737888 - MIR SINE MIR -6 256 40 180 309 103 0 chr11 31045696 31045764 -119737789 + L2 LINE L2 3227 3301 -12 2424 140 138 0 chr11 31046735 31047171 -119736382 + MLT1D LTR MaLR 7 502 -3 323 233 41 0 chr11 31047399 31047472 -119736081 - MIR SINE MIR -1 261 186 213 65 0 0 chr11 31047609 31047640 -119735913 + (A)n Simple_repeat Simple_repeat 1 31 0 189 277 169 15 chr11 31048681 31048746 -119734807 + L2 LINE L2 3118 3192 -80 246 220 0 0 chr11 31049493 31049552 -119734001 + (TA)n Simple_repeat Simple_repeat 2 60 0 219 333 0 11 chr11 31049858 31049948 -119733605 + GA-rich Low_complexity Low_complexity 2 90 0 994 237 96 26 chr11 31050721 31051124 -119732429 + L1ME1 LINE L1 5743 6334 0 33 0 0 0 chr11 31053164 31053197 -119730356 + AT_rich Low_complexity Low_complexity 1 33 0 588 275 112 71 chr11 31053406 31053790 -119729763 + MLT1H LTR MaLR 12 454 -95 24 53 0 0 chr11 31055343 31055381 -119728172 + AT_rich Low_complexity Low_complexity 1 38 0 23 54 0 0 chr11 31055820 31055857 -119727696 + AT_rich Low_complexity Low_complexity 1 37 0 1826 134 51 16 chr11 31056115 31056429 -119727124 + MER44D DNA MER2_type 1 595 -14 24 32 0 0 chr11 31057574 31057605 -119725948 + AT_rich Low_complexity Low_complexity 1 31 0 962 209 47 29 chr11 31058503 31058780 -119724773 - L1MA7 LINE L1 0 6291 6010 2751 7 0 0 chr11 31060474 31060771 -119722782 + AluYa5 SINE Alu 1 297 -14 201 74 0 0 chr11 31062407 31062434 -119721119 + (CAG)n Simple_repeat Simple_repeat 2 28 0 23 68 0 0 chr11 31064769 31064813 -119718740 + AT_rich Low_complexity Low_complexity 1 44 0 185 337 71 10 chr11 31067181 31067227 -119716326 - MIR3 SINE MIR -29 179 137 267 31 0 0 chr11 31067227 31067259 -119716294 + (CA)n Simple_repeat Simple_repeat 2 33 0 185 337 71 10 chr11 31067259 31067310 -119716243 - MIR3 SINE MIR -71 137 76 219 139 0 0 chr11 31067981 31068017 -119715536 + (A)n Simple_repeat Simple_repeat 1 36 0 208 309 32 48 chr11 31068552 31068678 -119714875 - MIR SINE MIR -70 192 69 23 0 0 0 chr11 31070077 31070100 -119713453 + AT_rich Low_complexity Low_complexity 1 23 0 252 86 0 0 chr11 31070327 31070362 -119713191 + (CA)n Simple_repeat Simple_repeat 1 35 0 318 87 0 0 chr11 31072203 31072249 -119711304 + (TCC)n Simple_repeat Simple_repeat 2 47 0 371 293 41 34 chr11 31073925 31074072 -119709481 + MIR SINE MIR 114 261 -1 218 103 0 26 chr11 31075588 31075627 -119707926 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 258 116 0 0 chr11 31075938 31075981 -119707572 + (GA)n Simple_repeat Simple_repeat 2 44 0 207 0 0 0 chr11 31076473 31076496 -119707057 + (A)n Simple_repeat Simple_repeat 1 23 0 21 36 0 0 chr11 31077024 31077052 -119706501 + GC_rich Low_complexity Low_complexity 1 28 0 441 231 28 35 chr11 31077989 31078132 -119705421 - LTR43 LTR ERV1 -291 311 170 198 0 0 0 chr11 31078407 31078429 -119705124 + (A)n Simple_repeat Simple_repeat 1 22 0 330 45 0 0 chr11 31078479 31078523 -119705030 + (CA)n Simple_repeat Simple_repeat 1 44 0 513 289 0 54 chr11 31079626 31079830 -119703723 - MIR SINE MIR -10 252 60 1536 164 9 73 chr11 31080390 31080707 -119702846 - AluJo SINE Alu -15 297 1 2181 178 11 14 chr11 31081496 31081862 -119701691 - MLT1A1 LTR MaLR 0 365 1 211 315 125 60 chr11 31081924 31082108 -119701445 - L2 LINE L2 -46 3226 3031 266 320 51 26 chr11 31083851 31084017 -119699536 + MIR SINE MIR 24 191 -63 1472 211 26 32 chr11 31084095 31084441 -119699112 + MLT1A2 LTR MaLR 1 344 -30 1310 196 0 0 chr11 31084441 31084670 -119698883 + MER46A DNA MER2_type 3 231 -5 461 324 236 0 chr11 31084999 31085274 -119698279 - L2 LINE L2 -1 3312 2973 2718 26 0 3 chr11 31086529 31086837 -119696716 + AluYa5 SINE Alu 1 307 -4 21 0 0 0 chr11 31087605 31087626 -119695927 + AT_rich Low_complexity Low_complexity 1 21 0 535 278 117 6 chr11 31088032 31088194 -119695359 + MIR SINE MIR 16 195 -67 353 211 0 0 chr11 31088196 31088267 -119695286 - MER92C LTR ERV1 0 554 484 289 224 17 0 chr11 31088436 31088494 -119695059 - MER92C LTR ERV1 -495 59 1 283 298 33 33 chr11 31088927 31089048 -119694505 - MER31-int LTR ERV1 -2343 2593 2473 873 198 36 93 chr11 31089874 31090152 -119693401 - MER31-int LTR ERV1 -3649 1287 1026 448 238 107 95 chr11 31090598 31090850 -119692703 - MER92B LTR ERV1 -381 255 1 437 312 41 6 chr11 31090946 31091116 -119692437 + MIR SINE MIR 43 218 -44 22 56 0 0 chr11 31091397 31091433 -119692120 + AT_rich Low_complexity Low_complexity 1 36 0 363 358 93 0 chr11 31092233 31092384 -119691169 + MIR SINE MIR 28 192 -70 413 167 0 0 chr11 31092400 31092466 -119691087 + Tigger2 DNA MER2_type 3 68 -2650 * 2625 149 34 16 chr11 31092451 31092895 -119690658 + Tigger2 DNA MER2_type 2267 2718 0 213 309 0 0 chr11 31093207 31093262 -119690291 - L2 LINE L2 -219 3053 2999 4504 93 3 2 chr11 31093326 31093915 -119689638 + L1PA14 LINE L1 5570 6159 -2 693 234 31 72 chr11 31094059 31094281 -119689272 + MLT1D LTR MaLR 1 213 -292 4992 73 3 0 chr11 31094281 31094914 -119688639 - THE1B-int LTR MaLR -945 635 1 2207 118 81 29 chr11 31094914 31095260 -119688293 - THE1B LTR MaLR 0 364 1 1799 237 5 11 chr11 31095503 31095870 -119687683 + MLT1A1 LTR MaLR 1 365 0 704 307 169 22 chr11 31097160 31097781 -119685772 + L2 LINE L2 2593 3308 -5 242 203 0 16 chr11 31097781 31097845 -119685708 + GA-rich Low_complexity Low_complexity 4 66 0 396 351 43 19 chr11 31099225 31099433 -119684120 - MIR SINE MIR -20 242 30 2107 130 0 0 chr11 31099542 31099835 -119683718 + AluSx SINE Alu 19 311 -1 1128 99 0 12 chr11 31099840 31100085 -119683468 + (GAA)n Simple_repeat Simple_repeat 1 242 0 390 334 96 35 chr11 31100187 31100615 -119682938 + L2 LINE L2 2081 2534 -780 807 193 84 101 chr11 31100647 31101004 -119682549 - LTR37A LTR ERV1 0 426 76 208 200 22 0 chr11 31101167 31101212 -119682341 + L2 LINE L2 2608 2653 -661 240 81 135 0 chr11 31101224 31101261 -119682292 + MER67D LTR ERV1 12 53 -461 192 200 0 0 chr11 31101261 31101306 -119682247 + (TG)n Simple_repeat Simple_repeat 1 45 0 2064 116 3 0 chr11 31101306 31101590 -119681963 - AluSx SINE Alu -27 285 1 1904 200 78 42 chr11 31101590 31101692 -119681861 + MER67D LTR ERV1 44 141 -373 3201 123 5 0 chr11 31101692 31102124 -119681429 - MER57B LTR ERV1 0 434 1 1904 200 78 42 chr11 31102124 31102471 -119681082 + MER67D LTR ERV1 141 509 -5 1366 184 27 51 chr11 31102478 31102771 -119680782 - AluJo SINE Alu -26 286 1 351 274 100 92 chr11 31102918 31103199 -119680354 + MER102a DNA MER1_type 32 314 -16 323 257 15 139 chr11 31103282 31103484 -119680069 + L2 LINE L2 2885 3061 -211 593 250 109 34 chr11 31104100 31104336 -119679217 - MLT1E1 LTR MaLR -41 613 283 230 295 86 38 chr11 31104390 31104495 -119679058 - MIR SINE MIR -65 143 34 2182 169 71 105 chr11 31104648 31105256 -119678297 + LTR18B LTR ERVL 1 587 -27 10476 186 34 7 chr11 31105291 31107139 -119676414 + HERVL18 LTR ERVL 4 1901 -4146 250 250 0 0 chr11 31107184 31107244 -119676309 + LTR18B LTR ERVL 133 192 -422 * 532 231 0 23 chr11 31107236 31107366 -119676187 + LTR18B LTR ERVL 486 612 -2 516 291 132 38 chr11 31107703 31107966 -119675587 + MLT1J1 LTR MaLR 1 291 -155 2336 89 13 0 chr11 31107966 31108269 -119675284 - L1PA11 LINE L1 -1 6173 5867 516 291 132 38 chr11 31108269 31108442 -119675111 + MLT1J1 LTR MaLR 291 446 0 21 0 0 0 chr11 31109410 31109431 -119674122 + AT_rich Low_complexity Low_complexity 1 21 0 427 219 38 75 chr11 31109534 31109694 -119673859 - MLT1K LTR MaLR 0 588 435 260 200 36 18 chr11 31109827 31109882 -119673671 - MLT1K LTR MaLR -371 217 162 361 315 0 0 chr11 31110161 31110250 -119673303 + polypurine Low_complexity Low_complexity 4 92 0 210 143 0 0 chr11 31111108 31111143 -119672410 + (T)n Simple_repeat Simple_repeat 1 35 0 40447 37 22 1 chr11 31111145 31117173 -119666380 - L1PA3 LINE L1 -1 6154 1 7627 28 0 3 chr11 31117906 31119169 -119664384 + L1PA4 LINE L1 4889 6155 0 285 248 14 117 chr11 31119600 31119745 -119663808 + MIR SINE MIR 87 216 -46 1147 315 122 4 chr11 31119878 31120396 -119663157 + L2 LINE L2 1775 2353 -961 5443 218 63 41 chr11 31120510 31122326 -119661227 + L1M4 LINE L1 23 1878 -4768 1186 58 0 0 chr11 31122327 31122481 -119661072 - L1PA6 LINE L1 -1 6153 6000 35103 90 12 7 chr11 31122481 31127695 -119655858 - L1P LINE L1 -896 5250 11 880 254 36 0 chr11 31127710 31127985 -119655568 + L1M4 LINE L1 1874 2158 -4488 337 301 27 48 chr11 31128009 31128155 -119655398 + L1M4 LINE L1 2296 2438 -4208 772 109 31 0 chr11 31128187 31128315 -119655238 + LTR54 LTR ERV1 379 510 0 1193 248 55 12 chr11 31128318 31128717 -119654836 + L1MB7 LINE L1 5751 6166 -18 1965 121 4 7 chr11 31128958 31129268 -119654285 + AluSc SINE Alu 1 309 0 778 151 22 170 chr11 31129317 31129635 -119653918 - L1MA10 LINE L1 -2 6332 6062 280 219 171 85 chr11 31129716 31129880 -119653673 + L2 LINE L2 3135 3312 -1 199 0 65 0 chr11 31132178 31132209 -119651344 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 873 253 34 17 chr11 31132450 31132687 -119650866 - MIR SINE MIR 0 262 22 976 195 0 0 chr11 31132826 31132990 -119650563 + FRAM SINE Alu 1 161 -15 273 221 18 0 chr11 31133316 31133380 -119650173 - MIR SINE MIR -71 137 72 722 270 47 47 chr11 31133518 31133751 -119649802 + MIR SINE MIR 4 236 -26 2541 211 40 42 chr11 31133857 31134603 -119648950 - L1MA9 LINE L1 -38 6274 5530 207 264 309 9 chr11 31134614 31134724 -119648829 - MIR3 SINE MIR -65 143 1 653 264 128 22 chr11 31134956 31135183 -119648370 + MIR SINE MIR 3 253 -9 955 259 121 47 chr11 31135344 31135808 -119647745 + MLT1F1 LTR MaLR 70 567 0 254 330 45 0 chr11 31135808 31135896 -119647657 - MIR SINE MIR -44 218 127 21 57 0 0 chr11 31137135 31137170 -119646383 + AT_rich Low_complexity Low_complexity 1 35 0 366 358 47 34 chr11 31137497 31137645 -119645908 + MIR3 SINE MIR 7 156 -52 2285 245 32 5 chr11 31137815 31138375 -119645178 - MER82 DNA MER2_type 0 653 79 2069 127 127 21 chr11 31139496 31139881 -119643672 + MSTA LTR MaLR 1 426 -2 850 245 25 0 chr11 31140249 31140445 -119643108 - MIR SINE MIR -60 202 2 283 274 0 0 chr11 31140656 31140729 -119642824 + (TA)n Simple_repeat Simple_repeat 1 73 0 978 278 38 59 chr11 31141031 31141474 -119642079 + LTR16A LTR ERVL 17 450 0 589 240 58 7 chr11 31141729 31141883 -119641670 - MIR SINE MIR -17 245 84 212 267 0 0 chr11 31142251 31142311 -119641242 + A-rich Low_complexity Low_complexity 1 60 0 312 231 0 0 chr11 31142830 31142908 -119640645 + GA-rich Low_complexity Low_complexity 3 80 0 21 0 0 0 chr11 31143096 31143117 -119640436 + AT_rich Low_complexity Low_complexity 1 21 0 438 266 92 41 chr11 31143501 31143817 -119639736 + HAL1b LINE L1 278 609 -739 595 264 28 60 chr11 31143902 31144169 -119639384 + HAL1b LINE L1 450 705 -643 2230 119 132 8 chr11 31144169 31144548 -119639005 - MSTA LTR MaLR 0 428 3 595 264 28 60 chr11 31144548 31144632 -119638921 + HAL1b LINE L1 705 790 -558 540 297 57 6 chr11 31144632 31144807 -119638746 + MIR SINE MIR 40 223 -39 261 268 0 29 chr11 31144860 31144874 -119638679 + GA-rich Low_complexity Low_complexity 1 14 -367 2358 90 3 6 chr11 31144874 31145186 -119638367 + AluSx SINE Alu 1 311 -1 261 268 0 29 chr11 31145186 31145253 -119638300 + GA-rich Low_complexity Low_complexity 14 381 0 234 311 31 31 chr11 31145306 31145563 -119637990 + HAL1b LINE L1 747 1003 -345 368 242 8 0 chr11 31145575 31145707 -119637846 + (TA)n Simple_repeat Simple_repeat 1 133 0 285 261 157 15 chr11 31145714 31145982 -119637571 + HAL1b LINE L1 1014 1319 -29 1875 184 82 64 chr11 31146051 31146585 -119636968 - MER89 LTR ERV1 -14 545 2 312 176 0 0 chr11 31146758 31146826 -119636727 + (TA)n Simple_repeat Simple_repeat 1 68 0 727 195 6 198 chr11 31147057 31147380 -119636173 + MIR SINE MIR 2 262 0 6791 24 12 2 chr11 31147525 31148377 -119635176 - L1PA4 LINE L1 -11 6144 5285 806 240 111 11 chr11 31149368 31149639 -119633914 - LTR16A LTR ERVL -98 352 55 21 0 0 0 chr11 31150045 31150066 -119633487 + AT_rich Low_complexity Low_complexity 1 21 0 40760 31 23 5 chr11 31150070 31156117 -119627436 - L1PA3 LINE L1 0 6155 3 285 287 127 32 chr11 31156439 31156732 -119626821 + L2 LINE L2 2679 3008 -264 812 216 38 24 chr11 31156732 31156945 -119626608 - MER20 DNA MER1_type -3 216 1 285 287 127 32 chr11 31156945 31157027 -119626526 + L2 LINE L2 3008 3081 -191 3236 141 41 38 chr11 31157153 31157553 -119626000 - Tigger2 DNA MER2_type -2058 660 256 1663 151 54 0 chr11 31157553 31157831 -119625722 - AluJb SINE Alu -19 293 1 3236 141 41 38 chr11 31157831 31158088 -119625465 - Tigger2 DNA MER2_type -2462 256 1 22876 70 7 0 chr11 31158299 31162149 -119621404 - L1PA7 LINE L1 0 6154 2283 180 0 0 0 chr11 31162891 31162911 -119620642 + (A)n Simple_repeat Simple_repeat 1 20 0 2211 93 3 6 chr11 31166139 31166471 -119617082 + L1P4 LINE L1 5387 5717 -457 497 269 101 17 chr11 31166471 31166709 -119616844 - MIR SINE MIR -3 259 2 269 368 132 0 chr11 31167590 31167780 -119615773 + MIR SINE MIR 48 262 0 22 35 0 0 chr11 31168509 31168538 -119615015 + AT_rich Low_complexity Low_complexity 1 29 0 754 281 38 21 chr11 31168687 31168830 -119614723 - MIR SINE MIR -2 260 110 1040 245 34 85 chr11 31168830 31169300 -119614253 - MLT1J1 LTR MaLR 0 446 1 754 281 38 21 chr11 31169300 31169394 -119614159 - MIR SINE MIR -152 110 19 517 253 43 105 chr11 31169917 31170199 -119613354 - MIR SINE MIR -16 246 2 446 314 58 11 chr11 31170653 31170844 -119612709 - MIR SINE MIR -59 203 4 3009 269 108 10 chr11 31171476 31172566 -119610987 + L2 LINE L2 1843 3038 -275 1537 280 52 35 chr11 31172597 31173386 -119610167 + L1ME LINE L1 34 835 -5235 3843 76 4 4 chr11 31173434 31173948 -119609605 - L1PA7 LINE L1 -7 6147 5634 40978 33 24 1 chr11 31173963 31179976 -119603577 - L1PA4 LINE L1 -3 6152 1 469 249 249 0 chr11 31180535 31180716 -119602837 - MIR SINE MIR -3 259 34 285 323 115 51 chr11 31180878 31181234 -119602319 - L2 LINE L2 0 3313 2935 250 288 50 36 chr11 31181882 31182021 -119601532 - MIR3 SINE MIR -8 200 60 2255 80 0 17 chr11 31182213 31182534 -119601019 + AluY SINE Alu 1 316 0 366 208 94 10 chr11 31183260 31183356 -119600197 - MER117 DNA MER1_type -48 149 46 670 250 49 11 chr11 31183554 31183738 -119599815 + LTR10B LTR ERV1 315 505 0 189 350 131 25 chr11 31184337 31184497 -119599056 + MIR SINE MIR 35 211 -51 257 345 60 0 chr11 31185696 31185812 -119597741 + Charlie8 DNA MER1_type 138 260 -2157 2968 162 15 31 chr11 31185963 31186466 -119597087 + L1MA4 LINE L1 5521 6031 -269 1790 149 29 60 chr11 31186466 31186814 -119596739 + MER1B DNA MER1_type 1 337 0 2968 162 15 31 chr11 31186814 31186840 -119596713 + L1MA4 LINE L1 6031 6056 -244 2099 135 3 0 chr11 31186840 31187151 -119596402 + AluSx SINE Alu 1 312 0 2968 162 15 31 chr11 31187151 31187236 -119596317 + L1MA4 LINE L1 6056 6126 -174 297 167 0 0 chr11 31187344 31187398 -119596155 + (CATA)n Simple_repeat Simple_repeat 1 54 0 287 188 163 12 chr11 31187561 31187641 -119595912 + MIR SINE MIR 63 154 -108 30 27 0 0 chr11 31187734 31187771 -119595782 + AT_rich Low_complexity Low_complexity 1 37 0 225 294 49 49 chr11 31188214 31188357 -119595196 + MIR SINE MIR 12 154 -108 2286 104 10 0 chr11 31189049 31189346 -119594207 + AluSp SINE Alu 4 303 -10 180 77 0 0 chr11 31189872 31189898 -119593655 + (GA)n Simple_repeat Simple_repeat 1 26 0 387 262 75 0 chr11 31190646 31190753 -119592800 + MIR3 SINE MIR 91 205 -3 23 33 0 0 chr11 31190817 31190847 -119592706 + AT_rich Low_complexity Low_complexity 1 30 0 339 329 70 35 chr11 31190915 31191143 -119592410 + MIR SINE MIR 1 236 -26 21 0 0 0 chr11 31191397 31191418 -119592135 + AT_rich Low_complexity Low_complexity 1 21 0 702 247 133 7 chr11 31191789 31192068 -119591485 - LTR33A LTR ERVL -7 516 203 323 256 0 23 chr11 31192726 31192812 -119590741 + CT-rich Low_complexity Low_complexity 2 85 0 226 354 22 3 chr11 31192895 31193002 -119590551 + MIR SINE MIR 28 114 -94 272 290 0 0 chr11 31193002 31193064 -119590489 + polypyrimidine Low_complexity Low_complexity 1 62 0 703 161 21 34 chr11 31193064 31193348 -119590205 + CT-rich Low_complexity Low_complexity 1 280 0 675 197 0 0 chr11 31193352 31193469 -119590084 - FRAM SINE Alu -14 162 46 339 205 0 0 chr11 31193569 31193652 -119589901 - L1M4 LINE L1 -941 5205 5123 3934 24 0 0 chr11 31193652 31194112 -119589441 + L1PA2 LINE L1 5693 6152 -3 971 180 35 2 chr11 31194119 31194691 -119588862 + L1MD2 LINE L1 5295 5975 -267 1266 208 13 20 chr11 31194697 31195000 -119588553 + L1MD2 LINE L1 6043 6343 -16 1428 239 3 27 chr11 31195174 31195508 -119588045 + MLT1I LTR MaLR 84 409 0 249 57 0 0 chr11 31196664 31196699 -119586854 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 336 271 42 0 chr11 31197483 31197579 -119585974 + MIR3 SINE MIR 98 197 -11 2828 130 56 33 chr11 31198364 31198916 -119584637 + L1MA8 LINE L1 5724 6288 -3 448 293 89 4 chr11 31198934 31199193 -119584360 + L1MEc LINE L1 1538 1818 -4578 3725 161 28 27 chr11 31199205 31199452 -119584101 - L1MA4 LINE L1 0 6300 6055 2099 135 3 0 chr11 31199452 31199763 -119583790 - AluSx SINE Alu 0 312 1 3725 161 28 27 chr11 31199763 31199789 -119583764 - L1MA4 LINE L1 -245 6055 6031 1790 149 29 60 chr11 31199789 31200137 -119583416 - MER1B DNA MER1_type 0 337 1 3725 161 28 27 chr11 31200137 31200641 -119582912 - L1MA4 LINE L1 -269 6031 5521 257 345 60 0 chr11 31200792 31200908 -119582645 - Charlie8 DNA MER1_type -2157 260 138 189 350 131 25 chr11 31202107 31202267 -119581286 - MIR SINE MIR -51 211 35 1732 246 25 23 chr11 31202866 31203378 -119580175 - LTR10D LTR ERV1 0 513 1 1592 178 0 50 chr11 31203398 31203723 -119579830 - AluJb SINE Alu 0 310 1 266 330 122 20 chr11 31204573 31204770 -119578783 - MIR SINE MIR -44 218 2 640 266 122 101 chr11 31206024 31206360 -119577193 - L2 LINE L2 -18 3295 2943 1562 218 7 13 chr11 31206360 31206667 -119576886 + AluJo SINE Alu 1 305 -7 640 266 122 101 chr11 31206667 31206824 -119576729 - L2 LINE L2 -370 2943 2791 1393 152 46 100 chr11 31206921 31207310 -119576243 - THE1C LTR MaLR -7 368 1 646 324 45 26 chr11 31207311 31207620 -119575933 + L2 LINE L2 2994 3308 -5 366 208 94 10 chr11 31208141 31208237 -119575316 + MER117 DNA MER1_type 46 149 -48 2254 80 0 17 chr11 31208963 31209284 -119574269 - AluY SINE Alu 0 316 1 250 288 50 36 chr11 31209476 31209615 -119573938 + MIR3 SINE MIR 60 200 -8 285 323 115 51 chr11 31210264 31210620 -119572933 + L2 LINE L2 2935 3313 0 469 249 249 0 chr11 31210782 31210963 -119572590 + MIR SINE MIR 34 259 -3 192 324 0 29 chr11 31212651 31212719 -119570834 - L2 LINE L2 0 3272 3207 22 0 0 0 chr11 31212719 31212741 -119570812 + AT_rich Low_complexity Low_complexity 1 22 0 637 301 38 9 chr11 31212750 31212963 -119570590 - MIR SINE MIR -12 250 32 375 309 44 28 chr11 31213712 31213893 -119569660 + MIR3 SINE MIR 4 187 -21 207 260 52 13 chr11 31214134 31214211 -119569342 + MIR SINE MIR 180 259 -3 567 249 68 89 chr11 31214480 31215276 -119568277 + L1MEc LINE L1 806 1591 -4624 492 145 0 0 chr11 31215301 31215384 -119568169 - L1PA16 LINE L1 -10 6156 6074 2999 160 69 12 chr11 31215384 31216147 -119567406 + MER21A LTR ERV1 3 931 0 690 148 25 0 chr11 31216147 31216269 -119567284 - L1PA16 LINE L1 -86 6080 5956 339 206 96 55 chr11 31216392 31216591 -119566962 + L1MEc LINE L1 1773 1979 -4417 2594 96 23 35 chr11 31216591 31217025 -119566528 - MER1A DNA MER1_type 0 529 61 386 101 116 14 chr11 31217068 31217137 -119566416 - Charlie3 DNA MER1_type 0 2711 2636 1257 80 37 43 chr11 31217149 31217336 -119566217 + AluSg/x SINE Alu 112 297 -15 1224 276 22 38 chr11 31217378 31217980 -119565573 + L1MEc LINE L1 2590 3181 -3034 22 56 0 0 chr11 31219271 31219307 -119564246 + AT_rich Low_complexity Low_complexity 1 36 0 245 271 17 0 chr11 31221780 31221839 -119561714 - MIR3 SINE MIR -35 173 114 274 326 127 36 chr11 31223668 31223889 -119559664 - L3 LINE CR1 -207 1370 1130 202 226 132 0 chr11 31224114 31224167 -119559386 - L3 LINE CR1 -635 942 883 399 280 68 23 chr11 31224520 31224652 -119558901 + MIR SINE MIR 32 169 -93 * 685 271 26 70 chr11 31224650 31224923 -119558630 - MIR SINE MIR 0 262 2 485 260 41 8 chr11 31225006 31225129 -119558424 + MIR SINE MIR 16 142 -66 534 271 33 26 chr11 31226097 31226248 -119557305 + MIR3 SINE MIR 19 170 -38 244 253 66 0 chr11 31226308 31226399 -119557154 - Charlie8 DNA MER1_type -1901 516 420 682 152 32 0 chr11 31226399 31226524 -119557029 - L1MC3 LINE L1 -10 7775 7647 207 100 0 0 chr11 31226757 31226787 -119556766 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 280 184 46 92 chr11 31226788 31226897 -119556656 - Charlie8 DNA MER1_type -2276 141 38 1694 183 46 39 chr11 31226960 31227349 -119556204 - MLT1D LTR MaLR -113 392 1 186 261 141 65 chr11 31229005 31229097 -119554456 - MIR SINE MIR -75 187 89 2209 108 61 19 chr11 31229167 31229527 -119554026 - THE1C LTR MaLR 0 375 1 5542 113 28 5 chr11 31229527 31230371 -119553182 - THE1C-int LTR MaLR 0 1580 717 438 70 2 0 chr11 31230373 31230442 -119553111 - THE1C LTR MaLR -285 70 1 454 325 16 5 chr11 31230483 31230677 -119552876 + MER117 DNA MER1_type 1 196 -1 708 211 13 13 chr11 31230873 31231029 -119552524 + MER58B DNA MER1_type 173 328 -13 41176 46 2 7 chr11 31231036 31237216 -119546337 + L1PA4 LINE L1 4 6155 0 329 204 48 36 chr11 31237202 31237369 -119546184 + L1ME LINE L1 5282 5450 -2335 * 192 77 0 0 chr11 31237369 31237395 -119546158 + (A)n Simple_repeat Simple_repeat 1 26 0 622 229 17 46 chr11 31239039 31239214 -119544339 - L2 LINE L2 -27 3286 3117 453 238 97 28 chr11 31239288 31239493 -119544060 + MLT1H LTR MaLR 6 232 -298 290 165 311 0 chr11 31239544 31239647 -119543906 + MLT1H LTR MaLR 421 555 0 1006 312 78 5 chr11 31239682 31240074 -119543479 - L2 LINE L2 -256 3057 2631 985 236 24 77 chr11 31240160 31240537 -119543016 - L1ME1 LINE L1 -31 6135 5779 1852 198 52 9 chr11 31240643 31241103 -119542450 - L1ME1 LINE L1 -374 5792 5313 2162 125 0 22 chr11 31241103 31241422 -119542131 - AluSq SINE Alu -1 312 1 1003 197 25 7 chr11 31241436 31241710 -119541843 - L1ME1 LINE L1 -875 5271 4993 321 258 0 32 chr11 31242219 31242312 -119541241 + CT-rich Low_complexity Low_complexity 4 93 0 1641 179 38 14 chr11 31242312 31242603 -119540950 - AluJo SINE Alu -14 298 1 391 218 109 13 chr11 31242981 31243137 -119540416 + L1ME LINE L1 5625 5795 -326 606 183 0 0 chr11 31243500 31243620 -119539933 + (TA)n Simple_repeat Simple_repeat 1 120 0 5655 114 11 23 chr11 31243636 31245360 -119538193 - L1PA10 LINE L1 -63 6105 4413 245 333 48 12 chr11 31245571 31245655 -119537898 + MIR SINE MIR 1 87 -175 2502 79 0 0 chr11 31247203 31247507 -119536046 - AluY SINE Alu -7 304 1 2692 105 6 0 chr11 31248417 31248779 -119534774 - THE1B LTR MaLR 0 364 1 299 353 77 67 chr11 31249225 31249879 -119533674 + L2 LINE L2 2525 3190 -82 699 288 114 34 chr11 31250707 31250942 -119532611 - L2 LINE L2 -7 3306 3046 1589 181 72 26 chr11 31250942 31251291 -119532262 - MLT1A1 LTR MaLR 0 365 1 699 288 114 34 chr11 31251291 31251319 -119532234 - L2 LINE L2 -267 3046 3022 296 245 39 26 chr11 31251415 31251570 -119531983 - L1ME LINE L1 -5057 1013 857 7560 31 1 0 chr11 31251612 31253064 -119530489 + L1PA4 LINE L1 4700 6152 -3 3843 76 4 4 chr11 31253079 31253593 -119529960 + L1PA7 LINE L1 5634 6147 -7 1537 280 52 35 chr11 31253641 31254430 -119529123 - L1ME LINE L1 -5235 835 34 3009 269 108 10 chr11 31254461 31255551 -119528002 - L2 LINE L2 -275 3038 1843 449 314 58 11 chr11 31256183 31256374 -119527179 + MIR SINE MIR 4 203 -59 517 256 43 105 chr11 31256828 31257110 -119526443 + MIR SINE MIR 2 246 -16 754 281 38 21 chr11 31257635 31257729 -119525824 + MIR SINE MIR 19 110 -152 1040 245 34 85 chr11 31257729 31258199 -119525354 + MLT1J1 LTR MaLR 1 446 0 754 281 38 21 chr11 31258199 31258342 -119525211 + MIR SINE MIR 110 260 -2 22 35 0 0 chr11 31258491 31258520 -119525033 + AT_rich Low_complexity Low_complexity 1 29 0 269 368 132 0 chr11 31259249 31259439 -119524114 - MIR SINE MIR 0 262 48 497 269 101 17 chr11 31260320 31260558 -119522995 + MIR SINE MIR 2 259 -3 2211 93 3 6 chr11 31260558 31260890 -119522663 - L1P4 LINE L1 -457 5717 5387 223 254 0 36 chr11 31262678 31262733 -119520820 + L2 LINE L2 3212 3264 -8 189 191 24 24 chr11 31263018 31263060 -119520493 + L3 LINE CR1 1532 1573 -4 181 172 0 0 chr11 31263454 31263483 -119520070 + L2 LINE L2 3267 3295 -18 749 266 126 55 chr11 31263560 31264049 -119519504 + MLT1H LTR MaLR 26 547 -2 2414 84 0 0 chr11 31264487 31264783 -119518770 - AluY SINE Alu -15 296 1 180 0 0 0 chr11 31264807 31264827 -119518726 + (TTG)n Simple_repeat Simple_repeat 2 21 0 218 309 103 44 chr11 31266427 31266563 -119516990 - L2 LINE L2 -2 3311 3168 420 280 119 18 chr11 31266564 31266732 -119516821 - MIR SINE MIR -64 198 14 203 295 115 0 chr11 31266837 31266898 -119516655 - L2 LINE L2 -3 3310 3243 1724 108 17 0 chr11 31267345 31267576 -119515977 - AluSc SINE Alu -14 295 61 206 269 45 30 chr11 31267581 31267648 -119515905 - MER5B DNA MER1_type 0 178 111 229 220 0 17 chr11 31267648 31267707 -119515846 + L1ME2 LINE L1 4794 4851 -1295 * 2977 204 30 49 chr11 31267704 31267766 -119515787 + L1ME2 LINE L1 5121 5183 -981 1963 175 18 30 chr11 31267766 31268161 -119515392 - MLT1B LTR MaLR 0 390 1 2977 204 30 49 chr11 31268161 31268280 -119515273 + L1ME2 LINE L1 5183 5303 -861 2392 82 3 0 chr11 31268280 31268573 -119514980 + AluSg SINE Alu 1 294 -16 2977 204 30 49 chr11 31268573 31269441 -119514112 + L1ME2 LINE L1 5303 6153 -11 300 283 40 30 chr11 31269441 31269506 -119514047 + MER5A DNA MER1_type 68 136 -53 180 0 0 0 chr11 31269506 31269526 -119514027 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 300 283 40 30 chr11 31269526 31269559 -119513994 + MER5A DNA MER1_type 136 167 -22 251 229 21 139 chr11 31269585 31269729 -119513824 - L3 LINE CR1 -59 1518 1392 197 349 12 12 chr11 31269904 31269987 -119513566 - L2 LINE L2 0 3272 3190 835 291 8 35 chr11 31270537 31270795 -119512758 - MIR SINE MIR 0 262 12 1176 285 60 2 chr11 31271696 31272093 -119511460 - MLT1J1 LTR MaLR -26 420 1 661 225 36 20 chr11 31272093 31272342 -119511211 + L1ME LINE L1 5258 5510 -660 401 289 46 61 chr11 31272496 31272693 -119510860 + LTR16C LTR ERVL 297 490 -1 291 241 94 94 chr11 31272719 31272910 -119510643 + L1ME LINE L1 5533 5723 -447 251 339 133 23 chr11 31273240 31273458 -119510095 + MIR SINE MIR 18 259 -3 289 315 0 0 chr11 31275787 31275876 -119507677 + L2 LINE L2 3184 3272 0 775 285 72 0 chr11 31276312 31276533 -119507020 + MIR SINE MIR 24 260 -2 462 310 32 11 chr11 31276652 31276839 -119506714 - MER117 DNA MER1_type -5 192 2 229 363 22 15 chr11 31279198 31279333 -119504220 + L2 LINE L2 2601 2736 -578 212 327 88 93 chr11 31279484 31279710 -119503843 + MIR SINE MIR 19 243 -19 25 0 0 0 chr11 31279776 31279801 -119503752 + AT_rich Low_complexity Low_complexity 1 25 0 1126 230 50 55 chr11 31281574 31281953 -119501600 - L1M4 LINE L1 -1017 5129 4753 378 352 0 0 chr11 31282008 31282113 -119501440 + MIR SINE MIR 45 149 -59 371 222 33 11 chr11 31282263 31282353 -119501200 - Charlie8 DNA MER1_type -2222 195 104 198 0 0 0 chr11 31282442 31282464 -119501089 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 596 334 71 19 chr11 31282668 31282976 -119500577 + LTR33 LTR ERVL 1 324 -197 * 1248 246 41 22 chr11 31282953 31283315 -119500238 - MLT1A2 LTR MaLR -5 369 1 249 279 0 15 chr11 31283323 31283391 -119500162 + LTR33 LTR ERVL 305 371 -150 995 114 0 0 chr11 31284912 31285044 -119498509 - AluSp/q SINE Alu -11 302 171 1756 151 17 20 chr11 31285115 31285407 -119498146 - AluJo SINE Alu -21 291 1 841 252 46 82 chr11 31285560 31285672 -119497881 + MLT2C1 LTR ERVL 1 116 -281 1994 120 23 33 chr11 31285672 31285972 -119497581 - AluSx SINE Alu -15 297 1 841 252 46 82 chr11 31285972 31286271 -119497282 + MLT2C1 LTR ERVL 116 397 0 1878 217 35 63 chr11 31286289 31286938 -119496615 + MLT1-int LTR MaLR 27 657 -714 929 275 45 115 chr11 31286994 31287291 -119496262 + MLT1-int LTR MaLR 662 909 -462 1658 118 118 48 chr11 31287291 31287580 -119495973 - AluSc SINE Alu 0 309 1 929 275 45 115 chr11 31287580 31287795 -119495758 + MLT1-int LTR MaLR 909 1138 -233 608 302 104 24 chr11 31287895 31288107 -119495446 + MIR SINE MIR 1 229 -33 322 254 97 0 chr11 31288989 31289103 -119494450 + MIR SINE MIR 138 262 0 723 150 67 0 chr11 31289155 31289275 -119494278 - MER5A DNA MER1_type 0 189 62 6231 24 7 4 chr11 31289275 31290040 -119493513 - L1PA4 LINE L1 0 6155 5389 279 182 36 0 chr11 31290042 31290097 -119493456 - MER5A DNA MER1_type -132 57 1 296 215 15 15 chr11 31290100 31290165 -119493388 - MIR3 SINE MIR -51 157 93 1555 279 80 27 chr11 31290410 31290970 -119492583 - MLT1E LTR MaLR 0 593 4 388 267 0 0 chr11 31290978 31291064 -119492489 - MIR3 SINE MIR -46 162 77 304 325 69 107 chr11 31291563 31291852 -119491701 - L2 LINE L2 -6 3266 2989 186 242 32 16 chr11 31292852 31292914 -119490639 + MIR SINE MIR 133 195 -67 264 345 54 36 chr11 31293071 31293239 -119490314 + MIR SINE MIR 7 177 -85 189 0 0 0 chr11 31293889 31293910 -119489643 + (A)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr11 31294142 31294163 -119489390 + AT_rich Low_complexity Low_complexity 1 21 0 312 179 286 0 chr11 31295205 31295317 -119488236 + MLT1H1 LTR MaLR 412 555 0 1006 312 78 5 chr11 31295352 31295744 -119487809 - L2 LINE L2 -256 3057 2631 985 236 24 77 chr11 31295830 31296207 -119487346 - L1ME1 LINE L1 -31 6135 5779 1852 198 52 9 chr11 31296313 31296773 -119486780 - L1ME1 LINE L1 -374 5792 5313 2162 125 0 22 chr11 31296773 31297092 -119486461 - AluSq SINE Alu -1 312 1 1003 197 25 7 chr11 31297106 31297380 -119486173 - L1ME1 LINE L1 -875 5271 4993 2232 142 14 5 chr11 31298105 31298472 -119485081 - L1PA15 LINE L1 -3 6162 5793 934 209 40 0 chr11 31298748 31298949 -119484604 - MER3 DNA MER1_type 0 209 1 212 221 13 0 chr11 31298993 31299070 -119484483 + (TA)n Simple_repeat Simple_repeat 1 78 0 454 278 20 53 chr11 31299832 31299862 -119483691 + MIR SINE MIR 12 41 -221 2188 113 51 25 chr11 31299862 31300217 -119483336 - THE1B LTR MaLR 0 364 1 454 278 20 53 chr11 31300217 31300337 -119483216 + MIR SINE MIR 41 157 -105 180 307 93 53 chr11 31300392 31300542 -119483011 - L3 LINE CR1 -516 1061 906 553 221 90 0 chr11 31300599 31300744 -119482809 - MER103 DNA DNA -5 161 4 309 339 73 54 chr11 31300809 31301122 -119482431 - L3 LINE CR1 -643 934 616 497 291 72 29 chr11 31302062 31302340 -119481213 + L2 LINE L2 2224 2513 -801 254 324 14 0 chr11 31302374 31302445 -119481108 - MIR SINE MIR -3 259 188 422 340 31 27 chr11 31302455 31302711 -119480842 + L2 LINE L2 2531 2787 -527 231 310 78 78 chr11 31302979 31303095 -119480458 + L2 LINE L2 3104 3219 -53 1647 209 168 15 chr11 31303298 31303838 -119479715 + MLT1G LTR MaLR 1 579 -11 1028 31 78 0 chr11 31304000 31304129 -119479424 - MER85 DNA T2_type 0 139 1 291 258 22 0 chr11 31305431 31305520 -119478033 + (TA)n Simple_repeat Simple_repeat 2 92 0 383 351 23 17 chr11 31305714 31305888 -119477665 - MIR SINE MIR -70 192 18 455 227 241 64 chr11 31306081 31306464 -119477089 - MLT1H LTR MaLR -16 533 56 1865 212 73 9 chr11 31306464 31306903 -119476650 - MLT1C LTR MaLR 0 467 1 455 227 241 64 chr11 31306903 31306972 -119476581 - MLT1H LTR MaLR -493 56 1 237 325 150 0 chr11 31307064 31307184 -119476369 - MIR3 SINE MIR -67 141 4 568 182 0 125 chr11 31307261 31307453 -119476100 + MLT1D LTR MaLR 1 168 -337 4161 40 0 0 chr11 31307462 31307965 -119475588 - L1PA2 LINE L1 0 6155 5653 1681 10 0 0 chr11 31307965 31308160 -119475393 + L1PA2 LINE L1 5476 5670 -485 1341 159 55 14 chr11 31308200 31308489 -119475064 + MLT1D LTR MaLR 202 502 -3 278 225 99 86 chr11 31308500 31308651 -119474902 - MLT1L LTR MaLR -13 602 450 228 303 45 0 chr11 31308693 31308759 -119474794 - MLT1J LTR MaLR -339 172 104 269 221 107 82 chr11 31309104 31309235 -119474318 - MIR SINE MIR -68 140 18 2691 173 27 29 chr11 31309555 31310071 -119473482 + MLT2B2 LTR ERVL 1 515 0 479 321 138 49 chr11 31310369 31311034 -119472519 - L2 LINE L2 0 3313 2584 2076 122 7 0 chr11 31311441 31311765 -119471788 - AluSc SINE Alu 0 326 1 2303 124 42 19 chr11 31311804 31312182 -119471371 - MLT1B LTR MaLR -3 387 1 373 317 35 21 chr11 31312842 31312987 -119470566 + L2 LINE L2 3125 3271 -1 1974 154 3 7 chr11 31313775 31314073 -119469480 - AluJo SINE Alu -15 297 1 237 287 101 70 chr11 31314819 31315044 -119468509 - MIR SINE MIR -16 246 12 24 32 0 0 chr11 31315513 31315544 -119468009 + AT_rich Low_complexity Low_complexity 1 31 0 306 308 48 0 chr11 31316056 31316160 -119467393 - L2 LINE L2 -1 3271 3163 802 279 74 5 chr11 31316246 31316497 -119467056 + MIR SINE MIR 7 255 -7 399 319 102 0 chr11 31316661 31316896 -119466657 - LTR16A LTR ERVL -179 271 13 1712 108 0 0 chr11 31317450 31317682 -119465871 + AluY SINE Alu 69 300 -11 21 36 0 0 chr11 31319438 31319466 -119464087 + AT_rich Low_complexity Low_complexity 1 28 0 328 309 159 14 chr11 31319485 31319692 -119463861 + L1ME4a LINE L1 5317 5553 -2255 323 121 17 0 chr11 31319747 31319805 -119463748 + (TA)n Simple_repeat Simple_repeat 1 59 0 684 74 28 0 chr11 31319863 31319971 -119463582 + (TA)n Simple_repeat Simple_repeat 2 112 0 474 260 110 24 chr11 31319974 31320220 -119463333 + L1ME4a LINE L1 5623 5889 -232 1987 131 7 0 chr11 31320220 31320536 -119463017 + AluSx SINE Alu 1 318 0 224 348 45 11 chr11 31320756 31320845 -119462708 + MIR SINE MIR 17 108 -100 1621 166 25 135 chr11 31321250 31321775 -119461778 - MLT1D LTR MaLR 0 505 39 250 270 17 25 chr11 31321815 31321922 -119461631 + MLT1I LTR MaLR 45 142 -267 547 207 171 0 chr11 31321933 31322073 -119461480 + MER5A DNA MER1_type 26 189 0 5029 98 6 39 chr11 31322365 31322735 -119460818 - L1PA15 LINE L1 -1 6164 5783 429 20 0 0 chr11 31322735 31322785 -119460768 + (CA)n Simple_repeat Simple_repeat 1 50 0 5029 98 6 39 chr11 31322785 31323227 -119460326 - L1PA15 LINE L1 -382 5783 5379 1089 158 27 0 chr11 31323522 31323706 -119459847 - MER5A DNA MER1_type 0 189 1 549 58 0 47 chr11 31323748 31323834 -119459719 + L1MA9 LINE L1 5796 5877 -435 301 187 0 67 chr11 31323849 31323924 -119459629 - L1MCa LINE L1 -4362 2064 1995 198 103 0 0 chr11 31323924 31323953 -119459600 + (CA)n Simple_repeat Simple_repeat 2 30 0 2840 183 14 58 chr11 31324023 31324663 -119458890 - LTR9 LTR ERV1 0 612 1 183 156 0 0 chr11 31324694 31324726 -119458827 + (TA)n Simple_repeat Simple_repeat 1 32 0 485 216 0 65 chr11 31324743 31324882 -119458671 - L1M2 LINE L1 -520 5792 5663 182 36 0 36 chr11 31325497 31325525 -119458028 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 2335 98 0 0 chr11 31325584 31325889 -119457664 - AluSc SINE Alu 0 309 5 2051 136 55 3 chr11 31325915 31326260 -119457293 - L1PA16 LINE L1 -10 6156 5794 773 200 0 0 chr11 31327932 31328062 -119455491 - FLAM_C SINE Alu -3 130 1 2111 77 35 0 chr11 31328080 31328366 -119455187 - L1PA7 LINE L1 -8 6146 5851 804 270 126 51 chr11 31328371 31328841 -119454712 - MLT1J LTR MaLR -6 505 1 427 184 40 0 chr11 31329031 31329107 -119454446 - AluJo SINE Alu -178 134 56 489 306 40 25 chr11 31330018 31330356 -119453197 - MLT1I LTR MaLR -2 407 62 861 259 31 22 chr11 31330651 31330879 -119452674 + MIR SINE MIR 3 232 -30 584 318 37 0 chr11 31331177 31331394 -119452159 + MIR SINE MIR 28 252 -10 1358 163 51 26 chr11 31332276 31332589 -119450964 - MER33 DNA MER1_type 0 324 4 44 84 0 0 chr11 31332678 31332785 -119450768 + AT_rich Low_complexity Low_complexity 1 107 0 1925 166 0 3 chr11 31332903 31333192 -119450361 + AluSx SINE Alu 1 288 -24 575 102 51 0 chr11 31333192 31333329 -119450224 + (TA)n Simple_repeat Simple_repeat 1 144 0 679 271 69 92 chr11 31333942 31334476 -119449077 - LTR33A LTR ERVL 0 523 2 343 264 248 8 chr11 31334922 31335043 -119448510 + MIR SINE MIR 29 178 -84 1743 174 0 20 chr11 31335044 31335343 -119448210 + AluSx SINE Alu 1 293 -19 2266 168 67 112 chr11 31335407 31336168 -119447385 - LTR8A LTR ERV1 0 727 1 25 31 0 0 chr11 31336203 31336235 -119447318 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chr11 31336434 31336469 -119447084 + AT_rich Low_complexity Low_complexity 1 35 0 240 349 12 12 chr11 31336600 31336683 -119446870 + L2 LINE L2 1089 1171 -2143 2815 249 200 49 chr11 31336998 31337265 -119446288 + L2 LINE L2 1447 1672 -1642 2190 123 3 3 chr11 31337265 31337575 -119445978 + AluSx SINE Alu 1 310 -2 2815 249 200 49 chr11 31337575 31338558 -119444995 + L2 LINE L2 1672 2886 -428 263 343 38 9 chr11 31338755 31338860 -119444693 - L2 LINE L2 -275 2997 2890 915 226 0 0 chr11 31339733 31339897 -119443656 + AluJb SINE Alu 134 297 -15 209 341 80 0 chr11 31342563 31342651 -119440902 + L2 LINE L2 3143 3237 -35 24 77 0 0 chr11 31343114 31343166 -119440387 + AT_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr11 31343381 31343412 -119440141 + AT_rich Low_complexity Low_complexity 1 31 0 576 294 62 31 chr11 31343667 31343775 -119439778 - MIR3 SINE MIR -7 201 83 1715 206 19 16 chr11 31343775 31344139 -119439414 - MLT1A1 LTR MaLR 0 365 1 576 294 62 31 chr11 31344139 31344224 -119439329 - MIR3 SINE MIR -125 83 2 856 210 11 0 chr11 31344488 31344664 -119438889 + MIR SINE MIR 79 256 -6 427 269 25 8 chr11 31344751 31344870 -119438683 + MIR SINE MIR 92 212 -50 2368 92 0 0 chr11 31345174 31345468 -119438085 + AluSg SINE Alu 1 294 -16 811 272 87 8 chr11 31346190 31346444 -119437109 + MLT1J1 LTR MaLR 44 317 -129 2839 149 61 31 chr11 31346669 31347245 -119436308 - LTR59 LTR ERV1 -4 593 1 1603 155 101 4 chr11 31347259 31347537 -119436016 + AluSx SINE Alu 1 305 -7 882 196 93 10 chr11 31347606 31347810 -119435743 + MER58A DNA MER1_type 4 224 0 998 258 96 41 chr11 31348945 31349363 -119434190 + MLT1J1 LTR MaLR 1 441 -5 189 0 0 0 chr11 31349539 31349560 -119433993 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 537 16 0 0 chr11 31349559 31349621 -119433932 + (GA)n Simple_repeat Simple_repeat 1 62 0 184 247 169 52 chr11 31349773 31349850 -119433703 - MIR SINE MIR -174 88 3 2016 164 41 37 chr11 31351051 31351606 -119431947 + MLT2A2 LTR ERVL 1 553 -1 1377 220 23 54 chr11 31353695 31354081 -119429472 - MLT1A2 LTR MaLR 0 374 1 1936 209 41 58 chr11 31354248 31354761 -119428792 + MLT1D LTR MaLR 2 505 0 303 293 68 54 chr11 31355019 31355166 -119428387 + L2 LINE L2 3155 3303 -10 468 0 0 0 chr11 31355166 31355218 -119428335 + (TA)n Simple_repeat Simple_repeat 2 53 0 2286 74 0 3 chr11 31355218 31355502 -119428051 - AluY SINE Alu -28 283 1 2604 99 14 8 chr11 31356254 31356616 -119426937 - THE1B LTR MaLR 0 364 1 53 30 0 0 chr11 31357425 31357492 -119426061 + AT_rich Low_complexity Low_complexity 1 67 0 1110 264 94 15 chr11 31357630 31357959 -119425594 + L1MDb LINE L1 10 364 -6045 1209 245 11 18 chr11 31358061 31358703 -119424850 + L1MDb LINE L1 2475 3219 -3187 1258 181 5 5 chr11 31358705 31358915 -119424638 + AluJb SINE Alu 80 289 -23 1921 268 50 12 chr11 31358930 31359897 -119423656 + L1MDb LINE L1 3213 4215 -2191 1018 232 20 10 chr11 31359900 31360197 -119423356 + L1MDb LINE L1 5009 5308 -1098 1757 268 80 17 chr11 31360201 31360787 -119422766 - MER76 LTR ERV -34 654 32 862 240 9 0 chr11 31360804 31361033 -119422520 + L1MDb LINE L1 5305 5535 -871 945 273 45 115 chr11 31361185 31361482 -119422071 + MLT1-int LTR MaLR 662 909 -462 1698 104 118 48 chr11 31361482 31361771 -119421782 - AluSc SINE Alu 0 309 1 945 273 45 115 chr11 31361771 31361986 -119421567 + MLT1-int LTR MaLR 909 1138 -233 608 302 104 24 chr11 31362086 31362298 -119421255 + MIR SINE MIR 1 229 -33 2061 152 36 3 chr11 31563450 31563786 -119219767 - MER7A DNA MER2_type 0 346 2 340 293 138 9 chr11 31563802 31563918 -119219635 + L2 LINE L2 3142 3272 0 2790 242 39 22 chr11 31564588 31565816 -119217737 - L1ME1 LINE L1 -8 6158 4909 872 178 32 24 chr11 31565816 31566124 -119217429 - MLT1A1 LTR MaLR 0 365 10 328 320 34 34 chr11 31566200 31566347 -119217206 + MIR SINE MIR 102 248 -14 430 348 31 19 chr11 31566441 31566602 -119216951 - L2 LINE L2 0 3272 3110 360 330 186 19 chr11 31566743 31567014 -119216539 + L2 LINE L2 2685 2998 -274 202 280 27 13 chr11 31567578 31567653 -119215900 + L2 LINE L2 3014 3089 -183 21 0 0 0 chr11 31568061 31568082 -119215471 + AT_rich Low_complexity Low_complexity 1 21 0 193 354 0 52 chr11 31568729 31568824 -119214729 + MIR SINE MIR 4 93 -115 26 0 0 0 chr11 31568964 31568990 -119214563 + AT_rich Low_complexity Low_complexity 1 26 0 664 181 50 143 chr11 31569581 31569840 -119213713 - MIR SINE MIR 0 262 28 1771 253 60 45 chr11 31569900 31570597 -119212956 + L1ME3A LINE L1 5451 6158 -12 181 405 0 0 chr11 31570999 31571073 -119212480 - L2 LINE L2 -51 3221 3148 * 304 291 64 73 chr11 31571068 31571288 -119212265 + L2 LINE L2 1043 1260 -2054 845 163 4 145 chr11 31571308 31571584 -119211969 + Charlie4a DNA MER1_type 74 310 -198 952 260 4 32 chr11 31571616 31571893 -119211660 + MLT1G LTR MaLR 30 298 -292 1047 280 17 47 chr11 31571968 31572439 -119211114 - L1MEc LINE L1 -5826 570 114 415 117 67 13 chr11 31572520 31572764 -119210789 + (TA)n Simple_repeat Simple_repeat 1 257 0 330 226 0 0 chr11 31572768 31572842 -119210711 - FLAM_A SINE Alu -66 67 4 1385 211 22 0 chr11 31573245 31573562 -119209991 + MER33 DNA MER1_type 1 324 0 209 301 21 0 chr11 31573592 31573685 -119209868 + L2 LINE L2 1991 2085 -1229 364 306 8 16 chr11 31573697 31573818 -119209735 - MER5A DNA MER1_type -2 187 68 319 298 124 70 chr11 31573856 31574212 -119209341 + L2 LINE L2 2138 2512 -802 704 197 53 43 chr11 31574268 31574456 -119209097 - MER20 DNA MER1_type -1 218 29 245 347 133 0 chr11 31575644 31575742 -119207811 + L2 LINE L2 3142 3252 -20 316 208 144 40 chr11 31577330 31577455 -119206098 + MIR SINE MIR 91 228 -34 25 0 0 0 chr11 31577718 31577743 -119205810 + AT_rich Low_complexity Low_complexity 1 25 0 1288 169 260 32 chr11 31578552 31578990 -119204563 - MER92B LTR ERV1 0 636 99 1128 185 56 56 chr11 31579263 31579587 -119203966 - LTR37A LTR ERV1 -99 327 4 24 0 0 0 chr11 31579725 31579749 -119203804 + AT_rich Low_complexity Low_complexity 1 24 0 341 316 196 0 chr11 31579772 31579905 -119203648 - MER5A DNA MER1_type -10 179 21 321 162 68 14 chr11 31580518 31580592 -119202961 - MER53 DNA DNA -111 78 1 313 164 0 0 chr11 31580688 31580743 -119202810 + FRAM/FAM SINE Alu 29 78 -97 2226 122 0 0 chr11 31581225 31581519 -119202034 + AluSx SINE Alu 1 294 -18 5279 227 41 21 chr11 31581519 31583749 -119199804 - L1PA13 LINE L1 -4309 2488 142 1146 268 45 37 chr11 31583947 31584435 -119199118 - L1ME2 LINE L1 -10 6154 5663 1268 232 109 20 chr11 31584436 31584968 -119198585 - L1ME2 LINE L1 -1154 4992 4432 1007 126 117 5 chr11 31584979 31585185 -119198368 - AluSg/x SINE Alu -1 308 80 749 201 103 60 chr11 31585325 31585397 -119198156 - L1ME2 LINE L1 -1655 4491 4424 1597 114 5 0 chr11 31585397 31585616 -119197937 - AluSq SINE Alu -2 311 92 749 201 103 60 chr11 31585616 31586010 -119197543 - L1ME2 LINE L1 -1722 4424 4005 448 172 11 0 chr11 31586031 31586124 -119197429 - L1M4 LINE L1 -1197 4949 4856 261 250 8 89 chr11 31586467 31586591 -119196962 - MLT1L LTR MaLR -384 231 118 1906 151 0 3 chr11 31586608 31586934 -119196619 - AluSx SINE Alu 0 325 1 511 262 26 2 chr11 31586953 31587124 -119196429 + L1ME1 LINE L1 6007 6178 0 196 184 0 0 chr11 31587770 31587808 -119195745 + L2 LINE L2 3272 3309 -4 2122 163 54 15 chr11 31587863 31588273 -119195280 + MSTB LTR MaLR 1 426 0 347 273 41 76 chr11 31588403 31588575 -119194978 - MLT1I LTR MaLR -10 399 234 223 216 14 14 chr11 31588800 31588874 -119194679 + A-rich Low_complexity Low_complexity 2 75 0 283 235 102 20 chr11 31589161 31589259 -119194294 + L2 LINE L2 3198 3303 -10 288 211 0 14 chr11 31589394 31589465 -119194088 - LTR33 LTR ERVL -2 519 450 2000 172 0 0 chr11 31589709 31590012 -119193541 + AluSx SINE Alu 1 303 -9 324 120 0 0 chr11 31591423 31591473 -119192080 + (T)n Simple_repeat Simple_repeat 1 50 0 1228 310 52 14 chr11 31591600 31592117 -119191436 - L2 LINE L2 -260 3053 2519 326 171 57 14 chr11 31592427 31592497 -119191056 + AluJo SINE Alu 64 136 -166 552 266 39 29 chr11 31592517 31592724 -119190829 + L2 LINE L2 3067 3275 -38 472 214 121 29 chr11 31592870 31593076 -119190477 - L1MC5 LINE L1 -49 7912 7688 277 280 80 10 chr11 31593441 31593541 -119190012 - MLT1H LTR MaLR -205 344 238 576 39 26 0 chr11 31594034 31594112 -119189441 + MADE1 DNA Mariner 1 80 0 4840 156 34 17 chr11 31594428 31595710 -119187843 - L1PA16 LINE L1 -1 6165 4873 1125 251 40 3 chr11 31595716 31596094 -119187459 - L1 LINE L1 -2832 3314 2923 1455 235 37 16 chr11 31596099 31596528 -119187025 - L1PA13 LINE L1 -4610 2228 1791 487 292 21 17 chr11 31596741 31596980 -119186573 - L1PA13 LINE L1 -5276 1562 1348 1057 323 39 42 chr11 31597020 31597543 -119186010 - L1M2 LINE L1 -6214 624 62 22 0 0 0 chr11 31597620 31597642 -119185911 + AT_rich Low_complexity Low_complexity 1 22 0 1225 259 73 153 chr11 31597773 31598634 -119184919 + L2 LINE L2 1876 2649 -665 1309 228 92 69 chr11 31598634 31599142 -119184411 + MLT2B1 LTR ERVL 1 520 0 1225 259 73 153 chr11 31599142 31599270 -119184283 + L2 LINE L2 2649 2786 -528 459 0 0 0 chr11 31599280 31599315 -119184238 + (CA)n Simple_repeat Simple_repeat 1 86 0 459 0 0 0 chr11 31599315 31599366 -119184187 + (CA)n Simple_repeat Simple_repeat 2 52 0 431 280 92 46 chr11 31599749 31600142 -119183411 - L1MC4a LINE L1 -1869 5939 5529 22 70 0 0 chr11 31600208 31600251 -119183302 + AT_rich Low_complexity Low_complexity 1 43 0 1964 156 33 0 chr11 31600456 31600758 -119182795 - AluSx SINE Alu 0 312 1 372 331 105 34 chr11 31600848 31601201 -119182352 - L1MC4a LINE L1 -1099 5047 4670 206 271 42 0 chr11 31602127 31602175 -119181378 - MIR SINE MIR -11 251 202 227 363 12 0 chr11 31602209 31602289 -119181264 + L2 LINE L2 3183 3263 -9 346 336 46 0 chr11 31604512 31604643 -119178910 - L2 LINE L2 0 3272 3136 549 326 60 73 chr11 31604663 31605357 -119178196 - L2 LINE L2 -278 2994 2315 323 356 19 44 chr11 31605442 31605602 -119177951 - MIR SINE MIR -101 161 6 845 318 139 7 chr11 31605705 31606438 -119177115 - HAL1 LINE L1 -171 2336 1507 607 304 76 29 chr11 31606491 31606833 -119176720 - HAL1 LINE L1 -1556 951 594 473 287 127 19 chr11 31607044 31607351 -119176202 - HAL1 LINE L1 -2167 340 1 1749 131 0 4 chr11 31607473 31607725 -119175828 + AluSq SINE Alu 54 304 -9 293 331 84 11 chr11 31607737 31607896 -119175657 + MIR SINE MIR 28 199 -63 182 336 42 17 chr11 31607961 31608080 -119175473 - L3b LINE CR1 -351 1232 1111 850 313 89 38 chr11 31608690 31609429 -119174124 + L1MEc LINE L1 36 812 -5584 411 310 95 65 chr11 31609570 31609802 -119173751 + L1MEc LINE L1 1623 1861 -4535 42241 39 3 1 chr11 31609805 31615948 -119167605 + L1PA4 LINE L1 1 6152 -3 496 235 136 22 chr11 31615953 31616225 -119167328 + L1MEc LINE L1 1850 2152 -4244 940 267 38 14 chr11 31616254 31616625 -119166928 + L1MEc LINE L1 2968 3347 -2868 429 257 18 18 chr11 31616848 31616957 -119166596 + MIR SINE MIR 4 112 -150 354 240 198 0 chr11 31616952 31617048 -119166505 + L2 LINE L2 3188 3302 -11 * 218 335 65 25 chr11 31617053 31617195 -119166358 - MIR SINE MIR -62 146 1 553 248 111 43 chr11 31617999 31618233 -119165320 - L1MC5 LINE L1 -50 7911 7662 1366 210 83 4 chr11 31618388 31618797 -119164756 + L1ME1 LINE L1 5204 5645 -521 556 171 16 39 chr11 31618797 31618926 -119164627 - MLT1B LTR MaLR -256 134 9 3108 77 2 19 chr11 31619016 31619443 -119164110 - L1PA10 LINE L1 -6 6162 5743 1830 197 79 5 chr11 31619474 31619890 -119163663 + L1ME1 LINE L1 5672 6118 -48 295 254 0 16 chr11 31619891 31619954 -119163599 - L2 LINE L2 -59 3254 3193 1879 161 10 72 chr11 31620112 31620503 -119163050 - MLT1B LTR MaLR -17 373 7 1600 194 47 73 chr11 31621013 31621515 -119162038 - MER41B LTR ERV1 -10 597 99 247 274 24 48 chr11 31622047 31622171 -119161382 + LTR33A LTR ERVL 402 522 -1 341 271 42 0 chr11 31622219 31622315 -119161238 - MIR3 SINE MIR -11 197 98 249 57 0 0 chr11 31623099 31623134 -119160419 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 1539 244 3 26 chr11 31624290 31624640 -119158913 - MLT1I LTR MaLR 0 409 84 1286 208 13 20 chr11 31624798 31625101 -119158452 - L1MD2 LINE L1 -16 6343 6043 1799 189 106 5 chr11 31625107 31625680 -119157873 - L1MC4 LINE L1 -704 5655 5295 3911 26 0 0 chr11 31625687 31626147 -119157406 - L1PA2 LINE L1 -3 6152 5693 708 227 5 0 chr11 31626147 31626332 -119157221 + L1M4 LINE L1 5123 5308 -838 1734 127 8 4 chr11 31626526 31626779 -119156774 + AluSq SINE Alu 46 299 -14 15437 181 25 17 chr11 31626789 31631052 -119152501 + L1PA15 LINE L1 1864 6159 -6 21 0 0 0 chr11 31631204 31631225 -119152328 + AT_rich Low_complexity Low_complexity 1 21 0 365 268 137 55 chr11 31631360 31631689 -119151864 - L1MC4a LINE L1 -1926 5882 5527 240 336 75 0 chr11 31632486 31632593 -119150960 + L2 LINE L2 2131 2245 -1069 283 384 20 27 chr11 31632689 31632835 -119150718 + L2 LINE L2 3128 3272 0 252 340 103 26 chr11 31634229 31634385 -119149168 + MIR SINE MIR 94 261 -1 1561 212 11 45 chr11 31634671 31635049 -119148504 - MLT1A1 LTR MaLR 0 365 1 2292 71 0 17 chr11 31635376 31635673 -119147880 - AluY SINE Alu -19 292 1 1350 215 67 53 chr11 31636087 31636579 -119146974 + MER39 LTR ERV1 2 682 -25 862 191 106 0 chr11 31636664 31636853 -119146700 + MER3 DNA MER1_type 1 209 0 318 216 10 31 chr11 31637051 31637148 -119146405 + L1M4 LINE L1 2159 2253 -3893 623 290 74 57 chr11 31637152 31637734 -119145819 - L1MEd LINE L1 -4940 1179 588 443 312 30 39 chr11 31637871 31638102 -119145451 - L1MEd LINE L1 -5735 384 156 2079 152 36 3 chr11 31638898 31639234 -119144319 - MER7A DNA MER2_type 0 346 2 339 293 138 9 chr11 31639250 31639366 -119144187 + L2 LINE L2 3142 3272 0 3030 242 39 22 chr11 31640036 31641264 -119142289 - L1ME1 LINE L1 -8 6158 4909 934 178 32 24 chr11 31641264 31641572 -119141981 - MLT1A1 LTR MaLR 0 365 10 373 326 20 20 chr11 31641648 31641795 -119141758 + MIR SINE MIR 102 248 -14 430 348 31 19 chr11 31641889 31642050 -119141503 - L2 LINE L2 0 3272 3110 360 330 186 19 chr11 31642191 31642462 -119141091 + L2 LINE L2 2685 2998 -274 195 280 27 13 chr11 31643027 31643102 -119140451 + L2 LINE L2 3014 3089 -183 21 0 0 0 chr11 31643510 31643531 -119140022 + AT_rich Low_complexity Low_complexity 1 21 0 194 351 0 52 chr11 31644196 31644273 -119139280 + MIR SINE MIR 20 92 -170 26 0 0 0 chr11 31644413 31644439 -119139114 + AT_rich Low_complexity Low_complexity 1 26 0 664 181 50 143 chr11 31645030 31645289 -119138264 - MIR SINE MIR 0 262 28 1963 247 65 49 chr11 31645349 31646046 -119137507 + L1ME3A LINE L1 5451 6158 -12 181 405 0 0 chr11 31646448 31646522 -119137031 - L2 LINE L2 -51 3221 3148 * 304 291 64 73 chr11 31646517 31646737 -119136816 + L2 LINE L2 1043 1260 -2054 916 163 4 145 chr11 31646757 31647033 -119136520 + Charlie4a DNA MER1_type 74 310 -198 1046 260 4 32 chr11 31647065 31647342 -119136211 + MLT1G LTR MaLR 30 298 -292 1176 280 17 47 chr11 31647417 31647888 -119135665 - L1MEc LINE L1 -5826 570 114 415 117 67 13 chr11 31647969 31648213 -119135340 + (TA)n Simple_repeat Simple_repeat 1 257 0 353 226 0 0 chr11 31648217 31648291 -119135262 - FLAM_A SINE Alu -66 67 4 1417 211 22 0 chr11 31648694 31649011 -119134542 + MER33 DNA MER1_type 1 324 0 204 301 21 0 chr11 31649041 31649134 -119134419 + L2 LINE L2 1991 2085 -1229 359 306 8 16 chr11 31649146 31649267 -119134286 - MER5A DNA MER1_type -2 187 68 315 298 124 70 chr11 31649305 31649661 -119133892 + L2 LINE L2 2138 2512 -802 768 197 53 43 chr11 31649717 31649905 -119133648 - MER20 DNA MER1_type -1 218 29 247 347 133 0 chr11 31651093 31651191 -119132362 + L2 LINE L2 3142 3252 -20 313 208 144 40 chr11 31652779 31652904 -119130649 + MIR SINE MIR 91 228 -34 25 0 0 0 chr11 31653167 31653192 -119130361 + AT_rich Low_complexity Low_complexity 1 25 0 1435 176 229 36 chr11 31654001 31654493 -119129060 - MER92B LTR ERV1 0 636 1 1218 185 56 56 chr11 31654711 31655035 -119128518 - LTR37A LTR ERV1 -99 327 4 24 0 0 0 chr11 31655173 31655197 -119128356 + AT_rich Low_complexity Low_complexity 1 24 0 336 316 196 0 chr11 31655220 31655353 -119128200 - MER5A DNA MER1_type -10 179 21 383 160 53 13 chr11 31655968 31656043 -119127510 - MER53 DNA DNA -111 78 1 332 185 0 0 chr11 31656139 31656193 -119127360 + FRAM/FAM SINE Alu 29 82 -93 2290 56 0 62 chr11 31656676 31656982 -119126571 + AluY SINE Alu 1 287 -24 1799 146 48 10 chr11 31657139 31657433 -119126120 - AluSx SINE Alu -7 305 1 472 266 122 61 chr11 31658232 31658559 -119124994 - L1ME3 LINE L1 -277 5885 5539 399 304 101 35 chr11 31658842 31659099 -119124454 - L1ME3 LINE L1 -942 5204 4931 341 254 152 50 chr11 31659174 31659516 -119124037 - L1ME3 LINE L1 -1341 4805 4429 8810 128 67 11 chr11 31662296 31663208 -119120345 + Tigger1 DNA MER2_type 1 861 -1557 2142 123 3 0 chr11 31663208 31663516 -119120037 - AluY SINE Alu -2 309 1 8810 128 67 11 chr11 31663516 31664779 -119118774 + Tigger1 DNA MER2_type 861 2365 -53 198 0 0 0 chr11 31664779 31664801 -119118752 + (TG)n Simple_repeat Simple_repeat 1 22 0 8810 128 67 11 chr11 31664801 31664859 -119118694 + Tigger1 DNA MER2_type 2365 2418 0 3708 171 74 53 chr11 31666028 31667024 -119116529 + Tigger6a DNA MER2_type 2 1014 -69 512 158 165 0 chr11 31667284 31667417 -119116136 + MER106B DNA MER1_type 905 1059 0 1743 121 8 12 chr11 31667522 31667779 -119115774 - AluSc SINE Alu -10 299 44 21 0 0 0 chr11 31669113 31669134 -119114419 + AT_rich Low_complexity Low_complexity 1 21 0 2221 112 3 3 chr11 31670299 31670604 -119112949 + AluSg SINE Alu 1 305 -5 603 92 0 0 chr11 31671388 31671475 -119112078 + (TGGA)n Simple_repeat Simple_repeat 3 89 0 286 130 0 0 chr11 31671505 31671551 -119112002 + MLT2C1 LTR ERVL 352 397 0 959 321 82 21 chr11 31671800 31672286 -119111267 + MLT1K LTR MaLR 14 529 -59 2569 55 10 0 chr11 31672421 31672729 -119110824 - AluY SINE Alu 0 311 1 420 83 0 0 chr11 31672986 31673046 -119110507 + MLT1A1 LTR MaLR 260 319 -46 530 287 41 26 chr11 31673760 31673781 -119109772 - MIR SINE MIR -42 220 201 1956 181 14 8 chr11 31673781 31674140 -119109413 - MLT1A1 LTR MaLR -4 361 1 530 287 41 26 chr11 31674140 31674313 -119109240 - MIR SINE MIR -61 201 23 872 123 6 49 chr11 31674668 31674830 -119108723 + L1P4 LINE L1 5664 5818 -347 2204 137 26 13 chr11 31674848 31675256 -119108297 + L1PA15 LINE L1 5779 6191 0 538 315 79 9 chr11 31675604 31675794 -119107759 + MIR SINE MIR 20 228 -34 2272 97 13 0 chr11 31675794 31676092 -119107461 + AluSx SINE Alu 1 302 -10 538 315 79 9 chr11 31676092 31676117 -119107436 + MIR SINE MIR 228 250 -12 607 180 66 49 chr11 31676142 31676325 -119107228 - MER53 DNA DNA 0 189 4 247 286 16 0 chr11 31676533 31676596 -119106957 + L2 LINE L2 3245 3308 -5 1221 62 0 0 chr11 31676735 31676879 -119106674 - AluSq SINE Alu -10 303 160 921 71 0 0 chr11 31676879 31676992 -119106561 - AluSq SINE Alu -189 123 11 330 293 62 78 chr11 31677565 31677821 -119105732 + L1ME4a LINE L1 5680 5931 -190 264 146 61 24 chr11 31677885 31677967 -119105586 + L1ME4a LINE L1 6033 6117 -4 488 287 21 48 chr11 31678068 31678256 -119105297 + MIR SINE MIR 80 262 0 269 213 16 0 chr11 31678312 31678373 -119105180 + CT-rich Low_complexity Low_complexity 3 64 0 466 216 72 0 chr11 31679408 31679519 -119104034 + L2 LINE L2 3195 3313 0 492 266 43 30 chr11 31680334 31680507 -119103046 + MIR SINE MIR 8 184 -59 550 202 250 12 chr11 31680773 31680941 -119102612 + MIR SINE MIR 4 211 -51 215 210 86 123 chr11 31681935 31682016 -119101537 - MER91A DNA MER1_type -115 81 4 232 205 26 64 chr11 31682442 31682520 -119101033 + MLT1K LTR MaLR 514 588 0 338 290 30 38 chr11 31682756 31682887 -119100666 - MIR SINE MIR -59 149 20 354 283 0 0 chr11 31683080 31683172 -119100381 - MER96 DNA MER1_type? 0 175 84 418 271 41 16 chr11 31683710 31683832 -119099721 - MIR SINE MIR -68 140 16 332 301 76 14 chr11 31683924 31684068 -119099485 - MIR SINE MIR -46 216 65 1675 250 34 44 chr11 31684170 31684740 -119098813 - MLT1F1 LTR MaLR -4 563 1 272 67 67 17 chr11 31686262 31686322 -119097231 + CT-rich Low_complexity Low_complexity 4 66 0 417 241 149 62 chr11 31686356 31686551 -119097002 + L2 LINE L2 3102 3313 0 367 315 54 38 chr11 31686659 31686843 -119096710 - MIR SINE MIR -48 214 28 1030 255 170 21 chr11 31690209 31690700 -119092853 + L2 LINE L2 2743 3313 0 488 268 72 17 chr11 31690804 31691008 -119092545 - MIR SINE MIR -2 260 47 1134 169 29 5 chr11 31691031 31691238 -119092315 + MER20 DNA MER1_type 8 219 0 990 286 70 5 chr11 31691288 31691732 -119091821 + L1ME4a LINE L1 5532 6004 -117 22 35 0 0 chr11 31691793 31691822 -119091731 + AT_rich Low_complexity Low_complexity 1 29 0 358 156 0 5 chr11 31691928 31691993 -119091560 + FRAM SINE Alu 73 127 -39 184 264 66 33 chr11 31692537 31692628 -119090925 + MIR SINE MIR 28 121 -141 437 311 31 6 chr11 31694433 31694594 -119088959 + L2 LINE L2 2785 2949 -365 * 564 333 125 11 chr11 31694588 31694939 -119088614 - L2 LINE L2 -39 3274 2884 258 259 48 116 chr11 31695114 31695261 -119088292 - MIR3 SINE MIR -69 139 3 414 260 31 72 chr11 31696045 31696268 -119087285 + L1ME LINE L1 5523 5736 -385 337 260 73 27 chr11 31696361 31696511 -119087042 - MER103 DNA DNA -7 159 3 261 176 118 50 chr11 31697250 31697369 -119086184 + L1ME LINE L1 5768 5894 -227 1712 211 163 22 chr11 31697558 31697703 -119085850 - L1MD3 LINE L1 -8 7987 7864 2331 114 19 27 chr11 31697703 31698079 -119085474 + THE1C LTR MaLR 3 375 0 1712 211 163 22 chr11 31698079 31699042 -119084511 - L1MD3 LINE L1 -131 7864 6643 214 209 58 12 chr11 31699048 31699134 -119084419 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 434 131 48 0 chr11 31699227 31699372 -119084181 + (TA)n Simple_repeat Simple_repeat 1 152 0 25 0 0 0 chr11 31699397 31699422 -119084131 + AT_rich Low_complexity Low_complexity 1 25 0 1481 238 151 2 chr11 31699431 31699847 -119083706 - MLT2B1 LTR ERVL -40 480 3 597 62 10 21 chr11 31699848 31699945 -119083608 + (TCTA)n Simple_repeat Simple_repeat 1 96 0 3978 228 43 41 chr11 31699946 31701274 -119082279 - L1MC4a LINE L1 -1216 6592 5262 492 225 64 77 chr11 31701533 31701734 -119081819 + MIR SINE MIR 6 202 -53 21 0 0 0 chr11 31702519 31702540 -119081013 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 31702746 31702767 -119080786 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1571 167 4 11 chr11 31702767 31703036 -119080517 - AluJo SINE Alu -32 280 14 288 299 37 9 chr11 31703054 31703161 -119080392 + MER20B DNA MER1_type 2 111 -672 2468 203 57 69 chr11 31703180 31703915 -119079638 + MER21B LTR ERV1 13 738 -125 1063 207 66 41 chr11 31703963 31704537 -119079016 + MER20B DNA MER1_type 135 783 0 514 259 63 0 chr11 31704556 31704699 -119078854 - MIR SINE MIR -83 179 28 2109 244 30 20 chr11 31705571 31706133 -119077420 + MER69 DNA AcHobo 1 568 -1958 1691 178 99 6 chr11 31706131 31706604 -119076949 + MER69 DNA AcHobo 2010 2526 0 * 564 321 72 8 chr11 31706620 31706857 -119076696 + L3 LINE CR1 1243 1494 -83 21 0 0 0 chr11 31708173 31708194 -119075359 + AT_rich Low_complexity Low_complexity 1 21 0 344 255 49 0 chr11 31709329 31709431 -119074122 - MIR SINE MIR 0 262 156 734 243 56 19 chr11 31710152 31710366 -119073187 - MIR SINE MIR -17 245 24 24 54 0 18 chr11 31710929 31710954 -119072599 + AT_rich Low_complexity Low_complexity 1 25 -30 1613 184 0 46 chr11 31710954 31711259 -119072294 - AluJo SINE Alu -21 291 1 24 54 0 18 chr11 31711259 31711289 -119072264 + AT_rich Low_complexity Low_complexity 25 55 0 186 43 0 0 chr11 31711459 31711482 -119072071 + (CATTT)n Simple_repeat Simple_repeat 3 25 0 24 53 0 0 chr11 31711793 31711831 -119071722 + AT_rich Low_complexity Low_complexity 1 38 0 266 29 0 0 chr11 31711953 31711987 -119071566 - MADE1 DNA Mariner -41 39 6 271 224 149 45 chr11 31712198 31712332 -119071221 + L2 LINE L2 3165 3312 -1 222 265 0 41 chr11 31712645 31712694 -119070859 - L2 LINE L2 -9 3263 3217 2196 68 61 7 chr11 31713009 31713302 -119070251 - AluSc SINE Alu 0 309 1 376 347 28 2 chr11 31713323 31713477 -119070076 - MIR3 SINE MIR -77 131 9 547 318 115 41 chr11 31714033 31714583 -119068970 + L2 LINE L2 2668 3242 -71 312 148 16 0 chr11 31714587 31714648 -119068905 - MSTB1 LTR MaLR -4 428 367 1842 215 27 0 chr11 31714648 31715024 -119068529 + MST-int LTR MaLR 478 863 -788 542 149 45 4 chr11 31715024 31715142 -119068411 + MSTB LTR MaLR 234 426 0 303 270 0 0 chr11 31715144 31715218 -119068335 + L2 LINE L2 3199 3272 0 217 225 0 0 chr11 31715377 31715417 -119068136 + (TAG)n Simple_repeat Simple_repeat 1 40 0 259 313 266 21 chr11 31715417 31715609 -119067944 - MIR SINE MIR 0 262 24 282 56 0 0 chr11 31717512 31717548 -119066005 + (GA)n Simple_repeat Simple_repeat 1 36 0 494 237 157 21 chr11 31719168 31719415 -119064138 - MLT1H LTR MaLR 0 555 249 521 213 67 33 chr11 31719487 31719637 -119063916 - MLT1H LTR MaLR -394 155 1 412 243 111 71 chr11 31720017 31720243 -119063310 + MIR SINE MIR 28 262 0 684 222 113 52 chr11 31720422 31720634 -119062919 + MIR SINE MIR 20 244 -18 339 253 253 6 chr11 31722057 31722227 -119061326 + L2 LINE L2 3100 3311 -2 3715 225 87 7 chr11 31722357 31723693 -119059860 - L1ME1 LINE L1 -26 6140 4702 441 300 76 51 chr11 31723766 31724003 -119059550 - MIR SINE MIR -14 248 6 22 0 0 0 chr11 31725260 31725282 -119058271 + AT_rich Low_complexity Low_complexity 1 22 0 467 194 129 81 chr11 31725440 31725626 -119057927 - HAL1b LINE L1 -443 905 711 321 299 52 58 chr11 31725810 31725984 -119057569 - HAL1 LINE L1 -738 1769 1597 588 275 22 34 chr11 31726157 31726335 -119057218 - MIR SINE MIR -24 238 63 1305 192 45 34 chr11 31728632 31728923 -119054630 - AluJo SINE Alu -18 294 1 1862 157 0 26 chr11 31729310 31729616 -119053937 - AluJb SINE Alu -14 298 1 2299 67 0 63 chr11 31730228 31730544 -119053009 - AluY SINE Alu -15 296 1 2490 59 0 7 chr11 31731511 31731818 -119051735 + AluY SINE Alu 1 305 -6 254 159 91 0 chr11 31733333 31733377 -119050176 + L2 LINE L2 3215 3262 -10 262 312 60 9 chr11 31734382 31734515 -119049038 - MIR SINE MIR -64 198 61 183 100 0 0 chr11 31735196 31735226 -119048327 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1708 154 4 0 chr11 31736137 31736416 -119047137 + AluSx SINE Alu 1 280 -32 345 47 0 0 chr11 31736416 31736459 -119047094 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr11 31736459 31736481 -119047072 + AT_rich Low_complexity Low_complexity 1 22 0 184 309 194 14 chr11 31736533 31736750 -119046803 - MIR SINE MIR -5 257 2 2086 101 3 11 chr11 31736868 31737154 -119046399 - AluSc SINE Alu -22 287 4 283 258 182 67 chr11 31737206 31737415 -119046138 + MIR SINE MIR 13 245 -17 21 0 0 0 chr11 31739846 31739867 -119043686 + AT_rich Low_complexity Low_complexity 1 21 0 312 140 0 0 chr11 31745140 31745190 -119038363 + L1MB1 LINE L1 6102 6151 -17 971 203 123 5 chr11 31747668 31747880 -119035673 - MIR SINE MIR -15 247 11 810 301 62 39 chr11 31748048 31748553 -119035000 + MLT1K LTR MaLR 2 588 0 1858 205 58 52 chr11 31748568 31749070 -119034483 + MLT1D LTR MaLR 1 505 0 580 292 34 42 chr11 31750034 31750270 -119033283 - MIR SINE MIR -21 241 8 205 351 0 0 chr11 31750327 31750384 -119033169 + MER91 DNA MER1_type 2 58 -82 272 322 38 71 chr11 31750540 31750723 -119032830 + MIR3 SINE MIR 5 181 -27 282 294 0 15 chr11 31752130 31752198 -119031355 + MIR SINE MIR 16 82 -180 230 267 17 0 chr11 31752306 31752366 -119031187 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 192 158 0 0 chr11 31752579 31752617 -119030936 + (CTCG)n Simple_repeat Simple_repeat 2 39 0 1803 147 42 114 chr11 31754502 31754582 -119028971 - L1MB4 LINE L1 -1 6179 6095 361 65 0 0 chr11 31754582 31754628 -119028925 + MADE1 DNA Mariner 1 46 -34 1803 147 42 114 chr11 31754628 31754951 -119028602 - L1MB4 LINE L1 -85 6095 5763 236 344 54 0 chr11 31754957 31755050 -119028503 - L2 LINE L2 -21 3251 3154 240 282 0 42 chr11 31755102 31755173 -119028380 - L2 LINE L2 0 3272 3205 199 189 0 0 chr11 31756087 31756124 -119027429 + L2 LINE L2 3187 3223 -49 237 253 152 67 chr11 31756148 31756417 -119027136 + L1ME4a LINE L1 5812 6103 -18 218 222 14 111 chr11 31756701 31756773 -119026780 - L2 LINE L2 0 3313 3249 841 153 8 0 chr11 31756940 31757064 -119026489 + FRAM SINE Alu 1 125 -51 644 242 101 22 chr11 31757163 31757390 -119026163 + MIR SINE MIR 17 261 -1 355 328 38 30 chr11 31757599 31757730 -119025823 + MIR3 SINE MIR 15 146 -62 212 175 53 35 chr11 31758143 31758200 -119025353 - L2 LINE L2 -10 3262 3205 279 318 163 31 chr11 31758498 31758627 -119024926 + L2 LINE L2 3122 3267 -5 1284 197 65 16 chr11 31758777 31759086 -119024467 + MER33 DNA MER1_type 1 324 0 483 256 62 62 chr11 31759086 31759391 -119024162 + L1ME4a LINE L1 5590 5894 -227 858 254 41 12 chr11 31759848 31760092 -119023461 + MIR SINE MIR 12 262 0 213 70 47 47 chr11 31760249 31760292 -119023261 + T-rich Low_complexity Low_complexity 4 46 0 2022 137 20 0 chr11 31760440 31760732 -119022821 + AluSx SINE Alu 1 298 -14 472 257 59 26 chr11 31761728 31761880 -119021673 - MER103 DNA DNA -1 165 9 467 263 171 0 chr11 31761922 31762074 -119021479 - MIR SINE MIR -1 261 84 2481 160 131 7 chr11 31762344 31762793 -119020760 - MLT1D LTR MaLR 0 505 1 303 293 47 0 chr11 31763181 31763287 -119020266 + MIR SINE MIR 140 250 -12 297 288 98 82 chr11 31763343 31763527 -119020026 - MIR SINE MIR -48 214 28 263 267 0 17 chr11 31764352 31764412 -119019141 - MIR SINE MIR -184 78 20 185 313 174 9 chr11 31764458 31764573 -119018980 + MIR SINE MIR 2 135 -127 216 0 0 0 chr11 31764598 31764622 -119018931 + (T)n Simple_repeat Simple_repeat 1 24 0 298 231 183 10 chr11 31764715 31764819 -119018734 + L2 LINE L2 3191 3312 -1 487 218 286 0 chr11 31764849 31764996 -119018557 - MER5A DNA MER1_type 0 189 1 382 243 312 5 chr11 31765003 31765192 -119018361 + MIR SINE MIR 16 262 0 861 251 65 9 chr11 31766448 31766663 -119016890 + MIR SINE MIR 15 241 -21 213 248 64 16 chr11 31766668 31766774 -119016779 - L2 LINE L2 -1 3312 3133 206 321 84 63 chr11 31766851 31767041 -119016512 - MIR SINE MIR -49 213 20 223 384 50 10 chr11 31767119 31767218 -119016335 + MIR SINE MIR 30 132 -76 239 356 130 27 chr11 31767382 31767528 -119016025 + L2 LINE L2 3103 3263 -9 353 197 0 0 chr11 31768385 31768446 -119015107 + MIR SINE MIR 70 130 -132 1042 212 17 68 chr11 31768526 31768595 -119014958 + MER58A DNA MER1_type 1 72 -2348 2377 87 0 0 chr11 31768595 31768893 -119014660 + AluSx SINE Alu 1 298 -14 1042 212 17 68 chr11 31768893 31769059 -119014494 + MER58A DNA MER1_type 72 224 0 307 311 59 7 chr11 31769121 31769256 -119014297 - MIR SINE MIR -119 143 2 446 178 109 0 chr11 31769478 31769579 -119013974 + MER103 DNA DNA 8 119 -47 24 32 0 0 chr11 31769737 31769768 -119013785 + AT_rich Low_complexity Low_complexity 1 31 0 433 328 96 35 chr11 31770366 31770564 -119012989 + L2 LINE L2 3053 3262 -10 1341 188 83 14 chr11 31771275 31771551 -119012002 + AluJo SINE Alu 1 295 -17 25 0 0 0 chr11 31771723 31771748 -119011805 + AT_rich Low_complexity Low_complexity 1 25 0 378 301 146 36 chr11 31771776 31771995 -119011558 - MIR SINE MIR 0 262 20 21 0 0 0 chr11 31772996 31773017 -119010536 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 31773188 31773209 -119010344 + AT_rich Low_complexity Low_complexity 1 21 0 327 300 200 7 chr11 31773775 31773925 -119009628 - MIR3 SINE MIR -15 193 15 221 286 62 54 chr11 31773933 31773990 -119009563 + MIR SINE MIR 31 86 -122 2987 136 36 0 chr11 31773990 31774491 -119009062 - L1MB3 LINE L1 0 6183 5665 221 286 62 54 chr11 31774491 31774545 -119009008 + MIR SINE MIR 86 143 -65 210 278 111 0 chr11 31776330 31776420 -119007133 - L2 LINE L2 -5 3267 3168 200 313 33 27 chr11 31776885 31777035 -119006518 - MER5A DNA MER1_type -4 185 35 553 252 67 96 chr11 31777187 31777230 -119006323 + L2 LINE L2 3036 3079 -234 2012 66 89 0 chr11 31777230 31777501 -119006052 - AluSp SINE Alu -18 295 1 553 252 67 96 chr11 31777501 31777727 -119005826 + L2 LINE L2 3079 3297 -16 189 0 0 0 chr11 31777731 31777752 -119005801 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 962 223 28 114 chr11 31777823 31777912 -119005641 + MER34 LTR ERV1 1 96 -446 1585 171 44 24 chr11 31777912 31778205 -119005348 + AluJb SINE Alu 1 299 -13 962 223 28 114 chr11 31778205 31778685 -119004868 + MER34 LTR ERV1 96 521 -21 332 258 54 0 chr11 31778745 31778838 -119004715 - L2 LINE L2 -15 3298 3201 416 339 31 26 chr11 31778950 31779142 -119004411 - MIR SINE MIR -51 211 19 342 291 50 50 chr11 31779307 31779489 -119004064 - MIR SINE MIR -51 211 30 530 243 0 74 chr11 31779579 31779768 -119003785 + MIR3 SINE MIR 22 196 -12 216 226 226 0 chr11 31780404 31780466 -119003087 + MIR SINE MIR 36 111 -97 237 323 108 32 chr11 31780641 31780827 -119002726 + L2 LINE L2 2702 2901 -413 311 282 24 0 chr11 31781060 31781145 -119002408 + MER5A DNA MER1_type 35 121 -68 25 0 0 0 chr11 31783022 31783047 -119000506 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr11 31784035 31784056 -118999497 + AT_rich Low_complexity Low_complexity 1 21 0 310 273 65 43 chr11 31784714 31784853 -118998700 + L3 LINE CR1 1177 1318 -259 279 54 0 0 chr11 31785088 31785125 -118998428 + (TG)n Simple_repeat Simple_repeat 2 38 0 248 289 121 0 chr11 31785129 31785212 -118998341 + L3 LINE CR1 1483 1575 -2 365 311 33 22 chr11 31786139 31786289 -118997264 - MIR SINE MIR -43 165 20 212 279 0 81 chr11 31786639 31786725 -118996828 + MIR3 SINE MIR 107 185 -23 368 302 94 13 chr11 31787201 31787360 -118996193 - MER5A DNA MER1_type 0 189 18 2556 0 0 7 chr11 31787462 31787742 -118995811 - AluYa5 SINE Alu -1 310 33 1764 152 7 17 chr11 31788885 31789181 -118994372 + AluJo SINE Alu 1 293 -19 40 21 0 0 chr11 31789184 31789231 -118994322 + AT_rich Low_complexity Low_complexity 1 47 0 3634 146 27 6 chr11 31789314 31789950 -118993603 + L1MB3 LINE L1 5534 6182 -1 22 35 0 0 chr11 31791081 31791110 -118992443 + AT_rich Low_complexity Low_complexity 1 29 0 270 305 40 49 chr11 31791973 31792373 -118991180 + MLT1K LTR MaLR 149 586 -2 22 0 0 0 chr11 31792392 31792414 -118991139 + AT_rich Low_complexity Low_complexity 1 22 0 303 28 0 0 chr11 31792816 31792852 -118990701 + (CA)n Simple_repeat Simple_repeat 2 37 0 27 29 0 0 chr11 31793288 31793322 -118990231 + AT_rich Low_complexity Low_complexity 1 34 0 298 325 204 6 chr11 31793494 31793651 -118989902 + MIR SINE MIR 57 244 -18 1728 176 0 26 chr11 31793829 31794142 -118989411 - AluJb SINE Alu -7 305 1 886 153 15 2 chr11 31794264 31794466 -118989087 - MER8 DNA MER2_type 0 239 1 204 348 62 0 chr11 31794543 31794655 -118988898 + L2 LINE L2 3106 3224 -89 443 211 8 23 chr11 31796592 31796725 -118986828 + MER113 DNA MER1_type? 1 131 -390 270 0 0 0 chr11 31796774 31796804 -118986749 + (CA)n Simple_repeat Simple_repeat 2 31 0 204 40 0 0 chr11 31796803 31796828 -118986725 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 249 321 27 9 chr11 31797054 31797166 -118986387 + GA-rich Low_complexity Low_complexity 6 119 0 498 268 12 61 chr11 31797876 31798040 -118985513 - MIR SINE MIR 0 262 107 197 207 61 49 chr11 31798182 31798264 -118985289 + MIR SINE MIR 179 261 -1 274 159 0 0 chr11 31798264 31798308 -118985245 + (CAT)n Simple_repeat Simple_repeat 1 44 0 814 211 19 93 chr11 31798898 31799168 -118984385 + L1MB8 LINE L1 5920 6169 -9 185 264 0 19 chr11 31799730 31799783 -118983770 - L3 LINE CR1 -676 901 850 * 254 333 121 11 chr11 31799760 31800033 -118983520 + L2 LINE L2 2594 2896 -418 424 311 54 76 chr11 31800041 31800318 -118983235 + L2 LINE L2 3001 3271 -1 1387 233 11 0 chr11 31800626 31800927 -118982626 + AluJo SINE Alu 1 304 0 2281 145 75 0 chr11 31801047 31801461 -118982092 + L1MB3 LINE L1 5737 6181 -2 486 245 31 13 chr11 31801466 31801625 -118981928 - MER112 DNA MER1_type -98 162 1 288 292 11 0 chr11 31801625 31801714 -118981839 - L1ME LINE L1 -289 5832 5743 1623 238 42 65 chr11 31802073 31802670 -118980883 + MLT1E LTR MaLR 11 593 0 754 300 56 25 chr11 31802916 31803421 -118980132 + MLT1K LTR MaLR 4 586 -2 3924 241 67 32 chr11 31803823 31806341 -118977212 - L1ME1 LINE L1 -4 6096 3488 793 282 112 39 chr11 31806359 31806816 -118976737 - L1ME1 LINE L1 -5575 495 6 234 315 27 18 chr11 31809388 31809499 -118974054 - MIR SINE MIR -40 222 111 265 253 77 44 chr11 31810628 31810810 -118972743 - L1ME4a LINE L1 -1 6120 5933 27 0 0 0 chr11 31811913 31811940 -118971613 + AT_rich Low_complexity Low_complexity 1 27 0 526 303 108 26 chr11 31813664 31813895 -118969658 + MIR SINE MIR 13 262 0 187 177 63 114 chr11 31813883 31813962 -118969591 - MIR SINE MIR -100 162 88 * 369 252 70 26 chr11 31815545 31815660 -118967893 - L2 LINE L2 0 3272 3153 1699 160 25 0 chr11 31816039 31816314 -118967239 - AluJb SINE Alu -30 282 1 293 212 77 49 chr11 31816577 31816692 -118966861 + MIR SINE MIR 42 153 -92 205 229 0 71 chr11 31816742 31816812 -118966741 + MIR SINE MIR 147 211 -51 231 204 0 0 chr11 31817556 31817605 -118965948 + T-rich Low_complexity Low_complexity 1 49 0 255 312 35 29 chr11 31819890 31819992 -118963561 - MIR SINE MIR -95 113 22 622 255 75 0 chr11 31820051 31820239 -118963314 - MIR SINE MIR 0 262 61 813 273 32 19 chr11 31821340 31821556 -118961997 + MIR SINE MIR 30 248 -14 2121 31 47 0 chr11 31821673 31821931 -118961622 + AluY SINE Alu 34 303 -8 377 286 9 27 chr11 31822172 31822284 -118961269 - MIR3 SINE MIR -45 163 54 396 345 18 12 chr11 31822342 31822507 -118961046 - MIR SINE MIR -66 196 31 394 339 44 28 chr11 31822562 31822742 -118960811 + MER5A DNA MER1_type 6 188 -1 1312 164 47 106 chr11 31822920 31822994 -118960559 - MER2 DNA MER2_type 0 345 268 2358 112 0 0 chr11 31822994 31823306 -118960247 + AluSx SINE Alu 1 312 0 1312 164 47 106 chr11 31823306 31823591 -118959962 - MER2 DNA MER2_type -77 268 7 228 67 0 0 chr11 31826235 31826265 -118957288 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 1725 121 143 0 chr11 31826843 31827108 -118956445 + AluSq SINE Alu 1 303 -10 226 267 33 0 chr11 31827133 31827193 -118956360 - MER113 DNA MER1_type? -6 515 454 192 258 97 65 chr11 31827456 31827549 -118956004 + L2 LINE L2 3193 3288 -25 1344 173 17 0 chr11 31827806 31828037 -118955516 - MER46A DNA MER2_type -1 235 1 465 257 143 11 chr11 31829053 31829228 -118954325 + MIR SINE MIR 65 262 0 231 382 20 0 chr11 31829279 31829381 -118954172 + L2 LINE L2 3168 3271 -1 259 356 34 7 chr11 31829561 31829707 -118953846 + MIR SINE MIR 109 258 -4 323 238 105 19 chr11 31830649 31830754 -118952799 - MIR SINE MIR -65 143 30 2745 97 11 3 chr11 31831549 31831921 -118951632 + THE1C LTR MaLR 1 375 0 24 32 0 0 chr11 31832714 31832745 -118950808 + AT_rich Low_complexity Low_complexity 1 31 0 283 247 108 21 chr11 31833022 31833115 -118950438 + L2 LINE L2 3197 3297 -16 240 308 11 33 chr11 31834327 31834418 -118949135 + MIR3 SINE MIR 9 97 -111 2024 119 0 20 chr11 31834562 31834884 -118948669 - AluSx SINE Alu 0 316 1 262 59 0 0 chr11 31836990 31837024 -118946529 + MLT1B LTR MaLR 3 36 -354 497 136 11 0 chr11 31837040 31837128 -118946425 + MLT1B LTR MaLR 301 389 -1 189 364 40 20 chr11 31837411 31837510 -118946043 + L2 LINE L2 3137 3237 -35 249 159 0 0 chr11 31837791 31837835 -118945718 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 304 313 147 18 chr11 31838298 31838461 -118945092 - MIR3 SINE MIR -15 193 10 21 0 0 0 chr11 31839249 31839270 -118944283 + AT_rich Low_complexity Low_complexity 1 21 0 506 306 64 30 chr11 31839765 31840030 -118943523 - L2 LINE L2 -9 3304 3031 1885 143 7 36 chr11 31841259 31841567 -118941986 + AluSx SINE Alu 1 299 -13 236 310 0 0 chr11 31842295 31842366 -118941187 + A-rich Low_complexity Low_complexity 2 72 0 451 267 81 62 chr11 31842572 31842830 -118940723 + MLT1L LTR MaLR 5 267 -348 365 245 119 26 chr11 31842976 31843127 -118940426 + MLT1L LTR MaLR 446 610 -5 356 291 53 46 chr11 31843308 31843360 -118940193 - MIR SINE MIR -6 256 206 1801 170 24 0 chr11 31843360 31843654 -118939899 + AluSx SINE Alu 1 301 -11 356 291 53 46 chr11 31843654 31843752 -118939801 - MIR SINE MIR -56 206 105 311 354 0 10 chr11 31843884 31844018 -118939535 - MER5A DNA MER1_type -38 151 8 574 259 47 26 chr11 31844550 31844743 -118938810 - MER117 DNA MER1_type 0 197 1 1617 192 45 3 chr11 31847539 31847831 -118935722 + AluJb SINE Alu 1 304 -8 210 246 0 0 chr11 31847873 31847934 -118935619 + (TA)n Simple_repeat Simple_repeat 1 61 0 248 234 0 0 chr11 31847983 31848030 -118935523 + (TAG)n Simple_repeat Simple_repeat 1 47 0 271 312 0 0 chr11 31848275 31848352 -118935201 + (CTA)n Simple_repeat Simple_repeat 1 77 0 216 241 17 52 chr11 31849356 31849414 -118934139 + MER91A DNA MER1_type 18 73 -123 223 286 0 0 chr11 31849582 31849631 -118933922 + (TGG)n Simple_repeat Simple_repeat 3 51 0 202 307 86 49 chr11 31850370 31850533 -118933020 + MIR SINE MIR 67 235 -27 1318 197 70 27 chr11 31850666 31850924 -118932629 + L1MC4 LINE L1 7636 7859 -136 339 25 0 0 chr11 31850924 31850964 -118932589 + (CA)n Simple_repeat Simple_repeat 2 41 0 1318 197 70 27 chr11 31850964 31851096 -118932457 + L1MC4 LINE L1 7859 7984 -11 1301 71 0 0 chr11 31852162 31852317 -118931236 - AluSp SINE Alu -7 306 152 188 143 18 125 chr11 31852381 31852437 -118931116 - L2 LINE L2 -264 3049 3000 2320 102 3 10 chr11 31852509 31852822 -118930731 + AluSq SINE Alu 1 311 -2 180 240 31 83 chr11 31852866 31852962 -118930591 - L2 LINE L2 -444 2870 2780 400 203 130 16 chr11 31853046 31853169 -118930384 + MIR SINE MIR 126 262 0 329 300 10 10 chr11 31853604 31853704 -118929849 + MIR SINE MIR 57 156 -106 588 118 0 0 chr11 31855173 31855258 -118928295 + AluSg/x SINE Alu 212 296 -16 2351 44 0 83 chr11 31855431 31855770 -118927783 - AluY SINE Alu 0 311 1 23 0 0 0 chr11 31855907 31855930 -118927623 + AT_rich Low_complexity Low_complexity 1 23 0 256 267 23 12 chr11 31856029 31856115 -118927438 + GA-rich Low_complexity Low_complexity 1 87 0 199 213 21 117 chr11 31856491 31856585 -118926968 - MIR SINE MIR -66 196 112 234 277 14 28 chr11 31856713 31856801 -118926752 + L1ME4a LINE L1 5979 6066 -55 2084 132 3 7 chr11 31856801 31857097 -118926456 - AluSx SINE Alu -17 295 1 234 277 14 28 chr11 31857097 31857149 -118926404 + L1ME4a LINE L1 6066 6117 -4 706 190 7 36 chr11 31857160 31857297 -118926256 - FLAM_A SINE Alu 0 133 1 295 250 0 0 chr11 31857316 31857380 -118926173 + MARNA DNA Mariner 341 404 -182 411 308 51 34 chr11 31857381 31857673 -118925880 + L1ME4a LINE L1 5533 5829 -292 333 275 190 20 chr11 31857911 31858064 -118925489 + L1ME4a LINE L1 5776 5902 -219 189 0 0 0 chr11 31858064 31858085 -118925468 + (TG)n Simple_repeat Simple_repeat 2 22 0 333 275 190 20 chr11 31858085 31858226 -118925327 + L1ME4a LINE L1 5902 6120 -1 215 300 14 0 chr11 31858874 31858944 -118924609 - L2 LINE L2 0 3272 3202 206 375 0 16 chr11 31859100 31859228 -118924325 - L2 LINE L2 -299 2973 2848 347 286 25 75 chr11 31860564 31860725 -118922828 + MIR SINE MIR 104 256 -6 521 313 14 0 chr11 31860745 31860892 -118922661 + MIR3 SINE MIR 47 195 -13 322 264 50 50 chr11 31861070 31861210 -118922343 - MIR SINE MIR -35 227 88 242 284 142 45 chr11 31861654 31861830 -118921723 + MIR SINE MIR 1 193 -69 284 264 45 27 chr11 31862573 31862683 -118920870 - MIR SINE MIR -65 197 86 318 329 112 0 chr11 31862911 31863072 -118920481 + MIR3 SINE MIR 21 199 -9 296 323 44 30 chr11 31863155 31863452 -118920101 + L1ME LINE L1 5525 5825 -296 23 0 0 0 chr11 31865318 31865341 -118918212 + AT_rich Low_complexity Low_complexity 1 23 0 192 179 0 0 chr11 31866195 31866234 -118917319 + GA-rich Low_complexity Low_complexity 2 40 0 321 299 4 135 chr11 31868018 31868153 -118915400 - L3 LINE CR1 -1 1576 1486 1696 190 0 25 chr11 31868153 31868469 -118915084 - AluJo SINE Alu -4 308 1 321 299 4 135 chr11 31868469 31868577 -118914976 - L3 LINE CR1 -91 1486 1365 406 303 138 7 chr11 31868659 31868804 -118914749 + MIR SINE MIR 86 249 -13 900 303 16 4 chr11 31868811 31869062 -118914491 + MIR SINE MIR 2 255 -7 248 282 60 43 chr11 31869114 31869231 -118914322 + MIR SINE MIR 100 218 -44 500 316 21 21 chr11 31869270 31869460 -118914093 - L3 LINE CR1 -226 1351 1162 1837 159 48 0 chr11 31870137 31870432 -118913121 - AluSx SINE Alu -3 309 1 186 286 20 0 chr11 31870624 31870673 -118912880 - L3 LINE CR1 -3 1574 1525 1872 154 6 49 chr11 31870872 31871197 -118912356 + AluJo SINE Alu 1 311 -1 21 0 0 0 chr11 31871428 31871449 -118912104 + AT_rich Low_complexity Low_complexity 1 21 0 435 297 42 18 chr11 31871828 31871993 -118911560 + MIR3 SINE MIR 7 175 -33 231 36 0 0 chr11 31872330 31872358 -118911195 + (T)n Simple_repeat Simple_repeat 1 28 0 348 320 0 0 chr11 31873105 31873205 -118910348 - L2 LINE L2 0 3272 3173 188 360 0 44 chr11 31873516 31873630 -118909923 - L2 LINE L2 -343 2929 2821 324 264 143 7 chr11 31874128 31874268 -118909285 - MIR SINE MIR -35 227 69 1522 106 179 0 chr11 31874414 31874660 -118908893 - AluSq SINE Alu -13 290 1 275 260 52 13 chr11 31875645 31875722 -118907831 - MIR SINE MIR -160 102 23 210 306 16 0 chr11 31875829 31875891 -118907662 - L2 LINE L2 0 3272 3210 836 183 153 7 chr11 31876112 31876386 -118907167 + LTR37A LTR ERV1 87 400 -26 660 300 4 36 chr11 31876570 31876759 -118906794 + MIR SINE MIR 16 196 -66 1782 156 7 27 chr11 31876759 31877060 -118906493 - AluJo SINE Alu -17 295 1 660 300 4 36 chr11 31877060 31877125 -118906428 + MIR SINE MIR 196 262 0 275 337 65 0 chr11 31879624 31879716 -118903837 - MIR SINE MIR -79 129 32 549 251 43 21 chr11 31879722 31879909 -118903644 - MIR SINE MIR 0 262 72 395 277 82 38 chr11 31880257 31880416 -118903137 + MIR SINE MIR 18 183 -79 331 298 41 41 chr11 31880964 31881125 -118902428 - L1ME4a LINE L1 -70 6051 5888 240 35 0 0 chr11 31881125 31881154 -118902399 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 331 298 41 41 chr11 31881154 31881287 -118902266 - L1ME4a LINE L1 -232 5889 5757 1935 142 14 14 chr11 31883039 31883335 -118900218 - AluSx SINE Alu -16 296 1 209 274 219 0 chr11 31883855 31883928 -118899625 - MIR SINE MIR -66 142 54 2568 115 3 3 chr11 31883980 31884344 -118899209 + THE1B LTR MaLR 1 364 0 299 263 0 74 chr11 31884720 31884815 -118898738 - MIR3 SINE MIR -6 202 115 464 257 128 39 chr11 31885146 31885325 -118898228 + MIR SINE MIR 68 262 0 193 234 64 0 chr11 31885686 31885733 -118897820 + L2 LINE L2 3223 3272 0 26 0 0 0 chr11 31885750 31885776 -118897777 + AT_rich Low_complexity Low_complexity 1 26 0 241 341 11 0 chr11 31886554 31886642 -118896911 - MARNA DNA Mariner -373 213 125 186 133 0 0 chr11 31886658 31886688 -118896865 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 56 0 0 chr11 31886689 31886725 -118896828 + AT_rich Low_complexity Low_complexity 1 36 0 1670 200 3 19 chr11 31886910 31887262 -118896291 - AluJb SINE Alu 0 347 1 41 36 0 0 chr11 31888208 31888263 -118895290 + AT_rich Low_complexity Low_complexity 1 55 0 25 0 0 0 chr11 31888843 31888868 -118894685 + AT_rich Low_complexity Low_complexity 1 25 0 220 229 16 16 chr11 31891247 31891308 -118892245 + MIR SINE MIR 82 142 -66 26 0 0 0 chr11 31891393 31891419 -118892134 + AT_rich Low_complexity Low_complexity 1 26 0 328 268 143 9 chr11 31891529 31891641 -118891912 - L2 LINE L2 0 3313 3187 1556 141 23 4 chr11 31891736 31891998 -118891555 - MER1B DNA MER1_type 0 339 73 623 304 4 83 chr11 31892904 31893170 -118890383 - MIR SINE MIR -10 252 8 180 0 0 0 chr11 31895188 31895208 -118888345 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 420 246 0 97 chr11 31895208 31895342 -118888211 - L2 LINE L2 -13 3300 3180 280 293 75 60 chr11 31896628 31896761 -118886792 - MIR SINE MIR 0 262 128 1583 176 85 12 chr11 31898619 31898959 -118884594 - MLT1A1 LTR MaLR 0 365 1 255 354 95 7 chr11 31901442 31901589 -118881964 - MIR3 SINE MIR -9 199 40 6769 112 29 46 chr11 31901651 31902214 -118881339 + Tigger3b DNA MER2_type 1 572 -2456 970 124 7 7 chr11 31902214 31902367 -118881186 - L1PB3 LINE L1 -1 6153 6001 6769 112 29 46 chr11 31902367 31903048 -118880505 + Tigger3b DNA MER2_type 572 1224 -7 439 279 131 33 chr11 31903918 31904101 -118879452 - MIR SINE MIR -61 201 1 620 251 68 52 chr11 31904596 31904847 -118878706 - MIR SINE MIR -1 261 7 184 304 145 0 chr11 31905568 31905637 -118877916 + L2 LINE L2 3158 3236 -36 336 244 210 8 chr11 31905660 31905779 -118877774 - MIR3 SINE MIR -9 199 57 216 182 0 23 chr11 31906514 31906540 -118877013 + (CAGA)n Simple_repeat Simple_repeat 2 28 -16 192 77 0 0 chr11 31906540 31906566 -118876987 + (TAGG)n Simple_repeat Simple_repeat 2 27 0 216 182 0 23 chr11 31906566 31906583 -118876970 + (CAGA)n Simple_repeat Simple_repeat 28 44 0 186 288 121 0 chr11 31908471 31908537 -118875016 + MIR SINE MIR 76 149 -113 312 27 0 0 chr11 31911669 31911706 -118871847 + (T)n Simple_repeat Simple_repeat 1 37 0 344 22 22 0 chr11 31912882 31912927 -118870626 + (CA)n Simple_repeat Simple_repeat 2 47 0 40 0 0 0 chr11 31913914 31913954 -118869599 + GC_rich Low_complexity Low_complexity 1 40 0 23 54 0 0 chr11 31914678 31914715 -118868838 + GC_rich Low_complexity Low_complexity 1 37 0 233 185 15 15 chr11 31914822 31914887 -118868666 + (CGAG)n Simple_repeat Simple_repeat 2 66 0 231 140 0 0 chr11 31915466 31915516 -118868037 + (CA)n Simple_repeat Simple_repeat 2 51 0 1927 161 30 19 chr11 31918939 31919367 -118864186 - LTR56 LTR ERV1 -3 442 10 246 286 56 92 chr11 31919763 31919959 -118863594 - L2 LINE L2 0 3313 3084 436 288 33 118 chr11 31920047 31920498 -118863055 - L2 LINE L2 -408 2906 2494 411 182 61 47 chr11 31921507 31921655 -118861898 - L1ME4a LINE L1 0 6121 5972 842 258 22 0 chr11 31921706 31921884 -118861669 + MIR SINE MIR 51 232 -30 243 0 0 0 chr11 31925085 31925112 -118858441 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 21 57 0 0 chr11 31925278 31925313 -118858240 + AT_rich Low_complexity Low_complexity 1 35 0 999 270 68 83 chr11 31926050 31926654 -118856899 + MLT1G1 LTR MaLR 1 595 0 28 0 0 0 chr11 31927384 31927412 -118856141 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr11 31928058 31928106 -118855447 + AT_rich Low_complexity Low_complexity 1 48 0 894 153 134 64 chr11 31928238 31928351 -118855202 - MER20 DNA MER1_type 0 219 115 3270 145 12 20 chr11 31928351 31928951 -118854602 - L1MB3 LINE L1 0 6183 5589 894 153 134 64 chr11 31928951 31929039 -118854514 - MER20 DNA MER1_type -104 115 4 334 300 22 11 chr11 31929459 31929549 -118854004 + MIR SINE MIR 23 113 -149 616 203 81 46 chr11 31929551 31929716 -118853837 + MER3 DNA MER1_type 5 180 -29 2500 134 5 3 chr11 31929716 31930090 -118853463 + THE1C LTR MaLR 1 375 0 616 203 81 46 chr11 31930090 31930121 -118853432 + MER3 DNA MER1_type 180 208 -1 476 313 8 0 chr11 31930131 31930265 -118853288 + MIR SINE MIR 120 254 -8 181 200 156 0 chr11 31930274 31930319 -118853234 + MIR SINE MIR 75 126 -82 351 324 71 8 chr11 31930793 31930949 -118852604 - MIR SINE MIR -62 146 4 468 336 99 9 chr11 31931167 31931399 -118852154 - MIR SINE MIR -4 258 6 427 179 13 0 chr11 31932734 31932812 -118850741 + MER116 DNA Mariner 2 80 0 345 222 40 16 chr11 31933431 31933557 -118849996 - L1MC4 LINE L1 0 8042 7914 304 337 27 43 chr11 31933999 31934183 -118849370 + L2 LINE L2 2591 2771 -543 2170 131 0 0 chr11 31934547 31934844 -118848709 + AluSx SINE Alu 1 297 -15 684 310 179 8 chr11 31934846 31935468 -118848085 + L2 LINE L2 2531 3272 -41 23 0 0 0 chr11 31935685 31935708 -118847845 + AT_rich Low_complexity Low_complexity 1 23 0 622 276 79 64 chr11 31935854 31936184 -118847369 + MER102b DNA MER1_type 1 335 -6 243 0 0 0 chr11 31936220 31936247 -118847306 + (T)n Simple_repeat Simple_repeat 1 27 0 259 237 0 17 chr11 31936387 31936446 -118847107 - MER69 DNA AcHobo -1 2525 2468 21 23 0 47 chr11 31936485 31936501 -118847052 + AT_rich Low_complexity Low_complexity 1 16 -25 2213 98 0 49 chr11 31936501 31936826 -118846727 + AluSg SINE Alu 1 309 -1 21 23 0 47 chr11 31936826 31936852 -118846701 + AT_rich Low_complexity Low_complexity 16 41 0 436 277 0 0 chr11 31936852 31936946 -118846607 - MER69 DNA AcHobo -1130 96 3 1138 223 143 53 chr11 31937186 31937599 -118845954 + LTR33A LTR ERVL 66 515 -8 446 203 23 30 chr11 31938005 31938138 -118845415 - L1MC5 LINE L1 -48 7913 7782 273 57 0 0 chr11 31938192 31938215 -118845338 + (TG)n Simple_repeat Simple_repeat 1 58 0 273 57 0 0 chr11 31938215 31938250 -118845303 + (TG)n Simple_repeat Simple_repeat 2 36 0 676 210 0 0 chr11 31938266 31938385 -118845168 - FRAM SINE Alu -30 146 28 4329 230 85 73 chr11 31938401 31939278 -118844275 - L1ME2 LINE L1 -32 6066 5201 1455 162 3 110 chr11 31939278 31939605 -118843948 - AluJb SINE Alu -6 296 5 4329 230 85 73 chr11 31939605 31940811 -118842742 - L1ME2 LINE L1 -897 5201 4010 876 199 6 6 chr11 31940811 31940977 -118842576 - FRAM SINE Alu 0 166 1 4329 230 85 73 chr11 31940977 31942232 -118841321 - L1ME2 LINE L1 -2088 4010 2686 22 35 0 0 chr11 31942232 31942261 -118841292 + AT_rich Low_complexity Low_complexity 1 29 0 5211 179 22 26 chr11 31942261 31942520 -118841033 - L1MA10 LINE L1 -29 6305 6047 1947 127 0 23 chr11 31942520 31942820 -118840733 - AluSg SINE Alu -17 293 1 5211 179 22 26 chr11 31942820 31944011 -118839542 - L1MA10 LINE L1 -287 6047 4853 248 250 68 11 chr11 31944022 31944110 -118839443 - L1ME2 LINE L1 -5478 592 500 226 325 113 53 chr11 31944336 31944487 -118839066 - L2 LINE L2 -5 3308 3149 1429 199 39 23 chr11 31944571 31944877 -118838676 - AluJo SINE Alu -1 311 1 193 362 0 29 chr11 31944992 31945061 -118838492 - L2 LINE L2 -1 3312 3246 235 374 30 8 chr11 31945177 31945308 -118838245 - MIR SINE MIR -109 153 20 556 293 42 59 chr11 31946688 31946975 -118836578 + MLT1J LTR MaLR 230 511 0 183 304 118 39 chr11 31946983 31947085 -118836468 - L2 LINE L2 -12 3260 3151 490 279 106 55 chr11 31947395 31947846 -118835707 - L1MEd LINE L1 -4862 1257 784 1304 174 32 124 chr11 31948437 31948839 -118834714 + MLT1A1 LTR MaLR 1 365 0 471 350 102 41 chr11 31948907 31949050 -118834503 + L2 LINE L2 2526 2659 -613 1018 155 4 105 chr11 31949050 31949289 -118834264 - MER20 DNA MER1_type -4 215 1 471 350 102 41 chr11 31949289 31949586 -118833967 + L2 LINE L2 2659 2987 -285 22 80 0 0 chr11 31950100 31950150 -118833403 + AT_rich Low_complexity Low_complexity 1 50 0 1463 164 6 74 chr11 31951139 31951450 -118832103 - L1MC1 LINE L1 -6 6327 6038 253 305 12 0 chr11 31951453 31951535 -118832018 - L1MC2 LINE L1 -277 6067 5985 * 3081 167 96 26 chr11 31951521 31952364 -118831189 - L1MCa LINE L1 -3915 2692 1761 968 75 0 8 chr11 31952364 31952497 -118831056 - Alu SINE Alu -12 298 167 1077 25 0 0 chr11 31952498 31952619 -118830934 + AluY SINE Alu 11 131 -180 2994 142 42 13 chr11 31952647 31953036 -118830517 - L1MCa LINE L1 -4819 1607 1192 193 0 61 30 chr11 31953036 31953069 -118830484 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2994 142 42 13 chr11 31953069 31953301 -118830252 - L1MCa LINE L1 -5234 1192 968 2526 196 163 33 chr11 31953304 31953942 -118829611 - L1MCa LINE L1 -5686 740 20 199 258 79 79 chr11 31956705 31956794 -118826759 + MER5B DNA MER1_type 66 154 -24 * 362 261 54 18 chr11 31956715 31956826 -118826727 - MER5A DNA MER1_type -73 116 2 185 336 89 94 chr11 31957328 31957703 -118825850 - L2 LINE L2 -115 3157 2788 415 270 103 59 chr11 31958013 31958053 -118825500 + MLT1L LTR MaLR 219 256 -359 1714 210 96 25 chr11 31958053 31958524 -118825029 - MLT1D LTR MaLR -1 504 1 415 270 103 59 chr11 31958524 31958824 -118824729 + MLT1L LTR MaLR 256 574 -41 1465 113 122 60 chr11 31958846 31959165 -118824388 + MER44D DNA MER2_type 1 609 0 386 275 92 0 chr11 31959285 31959405 -118824148 - MIR3 SINE MIR -41 167 37 389 303 13 23 chr11 31962411 31962544 -118821009 - MIR SINE MIR -57 151 32 210 71 0 0 chr11 31965987 31966015 -118817538 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 210 171 0 0 chr11 31966155 31966190 -118817363 + A-rich Low_complexity Low_complexity 1 35 0 233 203 29 58 chr11 31967836 31967905 -118815648 + MIR SINE MIR 18 84 -124 675 213 44 16 chr11 31967968 31968151 -118815402 - MER53 DNA DNA -1 188 1 3749 105 20 2 chr11 31968495 31969039 -118814514 + MER41A LTR ERV1 1 554 0 4141 142 30 57 chr11 31969039 31969837 -118813716 + MER41A-int LTR ERV1 1 690 -5256 2572 151 55 66 chr11 31969838 31970482 -118813071 + MER41A-int LTR ERV1 650 1300 -4646 2258 111 7 0 chr11 31970482 31970789 -118812764 + AluSx SINE Alu 1 309 -3 2572 151 55 66 chr11 31970789 31971144 -118812409 + MER41A-int LTR ERV1 1300 2962 -2984 * 7007 129 12 29 chr11 31971138 31972440 -118811113 + MER41A-int LTR ERV1 2807 4086 -929 5638 105 9 7 chr11 31972473 31973337 -118810216 + MER41A-int LTR ERV1 5057 5922 -24 605 144 21 0 chr11 31973337 31973434 -118810119 + AluSg/x SINE Alu 205 303 -9 2953 86 14 2 chr11 31973461 31973890 -118809663 + MER41A LTR ERV1 1 434 -120 2095 82 10 56 chr11 31973894 31974197 -118809356 - AluSq SINE Alu -24 289 1 180 0 0 0 chr11 31975701 31975721 -118807832 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1149 185 21 24 chr11 31976343 31976630 -118806923 - L1ME2 LINE L1 -213 5951 5666 3474 158 52 15 chr11 31976790 31977507 -118806046 - L1MB4 LINE L1 -13 6167 5425 278 267 91 12 chr11 31977510 31977675 -118805878 - L1ME LINE L1 -419 5702 5525 2296 109 0 7 chr11 31977905 31978207 -118805346 - AluSx SINE Alu -12 300 1 2097 158 14 3 chr11 31978298 31978659 -118804894 + MLT1A1 LTR MaLR 1 365 0 321 234 133 70 chr11 31978720 31978925 -118804628 - MIR SINE MIR -30 232 19 24 32 0 0 chr11 31979375 31979406 -118804147 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr11 31979571 31979593 -118803960 + AT_rich Low_complexity Low_complexity 1 22 0 444 326 11 129 chr11 31979737 31980087 -118803466 - L2 LINE L2 -49 3223 2915 1644 168 3 39 chr11 31980114 31980424 -118803129 + AluJb SINE Alu 1 299 -13 316 102 29 9 chr11 31980424 31980536 -118803017 + GA-rich Low_complexity Low_complexity 1 114 0 1322 22 5 32 chr11 31980539 31980724 -118802829 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 180 0 0 0 chr11 31980726 31980746 -118802807 + (GGAA)n Simple_repeat Simple_repeat 3 22 0 342 354 52 21 chr11 31980779 31980881 -118802672 - L2 LINE L2 -463 2851 2754 2459 76 0 0 chr11 31980881 31981185 -118802368 + AluY SINE Alu 1 304 -7 342 354 52 21 chr11 31981185 31981407 -118802146 - L2 LINE L2 -560 2754 2517 1123 200 23 0 chr11 31981493 31981708 -118801845 + MER58A DNA MER1_type 1 220 -4 291 93 0 0 chr11 31981725 31981768 -118801785 + (TG)n Simple_repeat Simple_repeat 2 44 0 * 459 92 0 0 chr11 31981767 31981832 -118801721 + (TA)n Simple_repeat Simple_repeat 2 66 0 2165 147 72 3 chr11 31981849 31982238 -118801315 - MSTA LTR MaLR -9 419 4 2043 140 41 0 chr11 31982289 31982631 -118800922 + Tigger2 DNA MER2_type 2361 2716 -2 324 0 0 0 chr11 31982631 31982667 -118800886 + (TG)n Simple_repeat Simple_repeat 1 36 0 256 318 118 12 chr11 31982682 31982927 -118800626 - L2 LINE L2 -944 2370 2100 1774 212 49 24 chr11 31982982 31983435 -118800118 - MLT1C LTR MaLR -3 464 1 23 0 0 0 chr11 31984439 31984462 -118799091 + AT_rich Low_complexity Low_complexity 1 23 0 301 269 26 0 chr11 31984479 31984557 -118798996 + L1MC3 LINE L1 6572 6651 -1134 700 309 87 28 chr11 31985400 31985869 -118797684 - L1M4 LINE L1 -745 5401 4905 676 257 43 43 chr11 31985978 31986254 -118797299 - L1M4 LINE L1 -1933 4213 3938 371 299 14 0 chr11 31986389 31986535 -118797018 - MLT1J2 LTR MaLR -232 214 63 2161 249 108 21 chr11 31986647 31987353 -118796200 - MER21B LTR ERV1 -54 809 43 358 239 0 0 chr11 31987356 31987427 -118796126 - MER21B LTR ERV1 -774 89 19 2219 121 7 0 chr11 31987519 31987825 -118795728 + AluSx SINE Alu 4 311 -1 441 54 0 0 chr11 31987920 31987976 -118795577 + (TA)n Simple_repeat Simple_repeat 2 57 0 249 83 0 0 chr11 31988025 31988061 -118795492 + (GA)n Simple_repeat Simple_repeat 1 36 0 1572 197 14 25 chr11 31988062 31988346 -118795207 - AluJo SINE Alu -31 281 1 725 201 51 26 chr11 31988383 31988617 -118794936 + L1MD3 LINE L1 7680 7995 0 291 279 115 77 chr11 31988772 31988955 -118794598 + MIR SINE MIR 67 256 -6 180 0 0 0 chr11 31988958 31988978 -118794575 + (CAT)n Simple_repeat Simple_repeat 2 21 0 593 287 14 91 chr11 31989432 31989707 -118793846 + LTR33 LTR ERVL 242 495 -26 652 340 78 13 chr11 31989975 31990207 -118793346 - MIR SINE MIR -3 259 13 1593 260 55 34 chr11 31990265 31990772 -118792781 - LTR33 LTR ERVL -1 520 3 314 243 96 52 chr11 31991809 31991945 -118791608 + MER20B DNA MER1_type 29 170 -613 612 265 133 33 chr11 31992744 31992955 -118790598 + MIR SINE MIR 29 260 -2 2707 90 8 13 chr11 31993059 31993436 -118790117 - THE1C LTR MaLR 0 375 1 360 73 18 0 chr11 31993698 31993753 -118789800 - MADE1 DNA Mariner 0 80 25 251 270 0 0 chr11 31993764 31993827 -118789726 + MLT1J LTR MaLR 111 173 -338 377 285 165 15 chr11 31994275 31994542 -118789011 + MLT1I LTR MaLR 25 331 -78 213 225 0 0 chr11 31994594 31994634 -118788919 + GA-rich Low_complexity Low_complexity 3 42 0 1000 280 55 41 chr11 31995295 31996082 -118787471 - L2 LINE L2 0 3313 2485 501 251 246 0 chr11 31996118 31996305 -118787248 + MIR SINE MIR 28 260 -2 392 0 21 0 chr11 31996734 31996782 -118786771 + (CA)n Simple_repeat Simple_repeat 2 50 0 696 298 36 4 chr11 31997019 31997267 -118786286 - MIR SINE MIR -2 260 5 1149 199 55 16 chr11 31997810 31998122 -118785431 + MER33 DNA MER1_type 1 324 0 411 256 67 18 chr11 31998758 31998922 -118784631 + LTR16C LTR ERVL 305 476 -15 210 253 145 0 chr11 31998969 31999052 -118784501 + MIR SINE MIR 120 214 -48 1366 222 34 58 chr11 31999976 32000391 -118783162 + MLT1D LTR MaLR 1 405 -100 209 231 103 77 chr11 32001146 32001224 -118782329 - L2 LINE L2 -7 3265 3186 258 291 154 9 chr11 32001462 32001600 -118781953 - MIR SINE MIR -78 130 32 23034 53 2 1 chr11 32002146 32005144 -118778409 + L1PA4 LINE L1 1 3001 -3145 1554 40 0 0 chr11 32005142 32005341 -118778212 + L1P LINE L1 4551 4749 -1397 * 19434 35 0 1 chr11 32005341 32008489 -118775064 + L1PA4 LINE L1 3006 6153 -2 375 333 0 0 chr11 32008653 32008755 -118774798 + MIR SINE MIR 38 139 -69 918 222 43 30 chr11 32008798 32009028 -118774525 - MIR SINE MIR -15 247 15 646 311 31 15 chr11 32009038 32009298 -118774255 - MLT1L LTR MaLR -2 613 350 181 248 83 64 chr11 32009822 32009931 -118773622 + L2 LINE L2 2890 3000 -272 4249 172 13 9 chr11 32010055 32010821 -118772732 + Tigger7 DNA MER2_type 2 770 -1717 2028 123 57 3 chr11 32010821 32011172 -118772381 + Tigger7 DNA MER2_type 2118 2487 0 2757 83 8 0 chr11 32011420 32011780 -118771773 + THE1B LTR MaLR 2 364 0 229 328 0 0 chr11 32012437 32012501 -118771052 + MIR3 SINE MIR 138 201 -7 600 191 124 62 chr11 32013162 32013403 -118770150 + ORSL DNA AcHobo 1 256 -19 258 265 108 35 chr11 32013699 32013871 -118769682 - MIR SINE MIR 0 262 29 363 335 91 15 chr11 32014668 32014865 -118768688 + MIR SINE MIR 49 260 -2 2282 240 50 24 chr11 32015221 32015962 -118767591 - MER20B DNA MER1_type -22 761 2 23 86 0 0 chr11 32016245 32016303 -118767250 + AT_rich Low_complexity Low_complexity 1 58 0 11665 202 160 55 chr11 32016304 32017846 -118765707 + L1P3 LINE L1 687 2067 -4394 730 171 0 0 chr11 32017846 32017963 -118765590 - AluSg/x SINE Alu -14 298 182 11665 202 160 55 chr11 32017963 32018930 -118764623 + L1P3 LINE L1 2067 2932 -3529 1551 112 0 0 chr11 32018930 32019135 -118764418 + AluSq SINE Alu 1 205 -108 11665 202 160 55 chr11 32019135 32020498 -118763055 + L1P3 LINE L1 2932 5067 -1394 562 259 29 7 chr11 32020751 32020890 -118762663 + MIR SINE MIR 50 191 -71 588 257 118 37 chr11 32020937 32021412 -118762141 - MLT1K LTR MaLR -34 554 7 266 231 46 0 chr11 32021612 32021677 -118761876 + L2 LINE L2 3205 3272 0 515 281 58 29 chr11 32021791 32021851 -118761702 - MER5A DNA MER1_type -4 185 128 2134 117 38 0 chr11 32021851 32022142 -118761411 + AluSx SINE Alu 1 302 -10 515 281 58 29 chr11 32022142 32022252 -118761301 - MER5A DNA MER1_type -61 128 10 1962 130 67 9 chr11 32022256 32022601 -118760952 - MLT1A1 LTR MaLR 0 365 1 6048 97 22 15 chr11 32023116 32024180 -118759373 + L1PA11 LINE L1 5104 6173 -1 23 0 0 0 chr11 32025356 32025379 -118758174 + AT_rich Low_complexity Low_complexity 1 23 0 29 78 0 0 chr11 32026232 32026296 -118757257 + AT_rich Low_complexity Low_complexity 1 64 0 279 284 164 0 chr11 32026499 32026615 -118756938 + L2 LINE L2 3138 3272 0 330 277 0 12 chr11 32026637 32026720 -118756833 + MIR3 SINE MIR 110 191 -17 273 261 151 42 chr11 32026738 32026857 -118756696 + MER5A DNA MER1_type 55 186 -3 2676 209 55 151 chr11 32028082 32028788 -118754765 + L1MC4a LINE L1 5851 6275 -1533 2068 124 33 15 chr11 32028788 32029119 -118754434 - MER1B DNA MER1_type 0 337 1 2676 209 55 151 chr11 32029119 32030059 -118753494 + L1MC4a LINE L1 6275 7304 -504 515 159 9 18 chr11 32030063 32030176 -118753377 + L1MA9 LINE L1 5922 6033 -279 207 162 0 0 chr11 32030178 32030215 -118753338 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 3379 149 61 38 chr11 32030218 32030935 -118752618 - L1MA9 LINE L1 -36 6276 5543 1407 221 48 61 chr11 32030928 32031249 -118752304 + L1MD3 LINE L1 7536 7851 -144 * 2605 94 8 24 chr11 32031249 32031630 -118751923 - THE1C LTR MaLR 0 375 1 1407 221 48 61 chr11 32031630 32031764 -118751789 + L1MD3 LINE L1 7851 7985 -10 276 77 0 0 chr11 32031986 32032025 -118751528 + (CA)n Simple_repeat Simple_repeat 2 40 0 484 307 31 47 chr11 32032126 32032435 -118751118 - MLT1I LTR MaLR -77 332 59 443 288 125 53 chr11 32032505 32032769 -118750784 + L2 LINE L2 3030 3312 -1 227 231 19 0 chr11 32032821 32032873 -118750680 + L2 LINE L2 3220 3272 0 22 0 0 0 chr11 32033652 32033674 -118749879 + AT_rich Low_complexity Low_complexity 1 22 0 685 231 0 0 chr11 32034562 32034683 -118748870 - MER58A DNA MER1_type 0 121 1 384 280 14 21 chr11 32034705 32034848 -118748705 - L1ME LINE L1 -439 5682 5541 355 287 85 27 chr11 32035153 32035485 -118748068 - MLT1I LTR MaLR -3 447 80 1376 214 31 22 chr11 32035485 32035840 -118747713 - L1MC4a LINE L1 -435 7373 7016 4888 150 13 33 chr11 32036003 32036923 -118746630 + L1MA3 LINE L1 5403 6304 -1 281 179 18 0 chr11 32036978 32037034 -118746519 - Alu SINE Alu -2 300 244 917 136 8 0 chr11 32037034 32037166 -118746387 - AluSq/x SINE Alu -179 133 1 1452 180 27 4 chr11 32037168 32037189 -118746364 - AluJo SINE Alu -8 304 285 195 42 0 0 chr11 32037189 32037213 -118746340 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 * 870 101 20 7 chr11 32037212 32037361 -118746192 + (TTTC)n Simple_repeat Simple_repeat 3 153 0 1452 180 27 4 chr11 32037213 32037595 -118745958 - AluJo SINE Alu -27 285 43 21 82 0 0 chr11 32037895 32037944 -118745609 + AT_rich Low_complexity Low_complexity 1 49 0 374 303 66 13 chr11 32038761 32038912 -118744641 + MIR SINE MIR 34 191 -71 226 213 0 53 chr11 32039550 32039644 -118743909 - L1MC4 LINE L1 -1339 6703 6615 238 286 0 0 chr11 32039854 32039910 -118743643 - MER91B DNA MER1_type -133 57 2 283 312 0 37 chr11 32039932 32040041 -118743512 - L1MC4 LINE L1 -2020 5788 5684 226 238 32 0 chr11 32040940 32041003 -118742550 - LTR48 LTR ERV1 -618 169 105 274 324 7 44 chr11 32041290 32041426 -118742127 - MIR3 SINE MIR -6 202 72 378 315 62 28 chr11 32041631 32041809 -118741744 + MIR SINE MIR 9 192 -70 199 286 27 109 chr11 32041961 32042003 -118741550 + MIR3 SINE MIR 74 118 -90 1640 158 40 20 chr11 32042003 32042301 -118741252 + AluJb SINE Alu 1 304 -8 199 286 27 109 chr11 32042301 32042405 -118741148 + MIR3 SINE MIR 118 208 0 * 341 220 248 28 chr11 32042396 32042505 -118741048 - MER5A DNA MER1_type 0 178 46 414 340 7 7 chr11 32042517 32042661 -118740892 + MIR SINE MIR 119 262 0 454 295 104 36 chr11 32042773 32042966 -118740587 + MER102a DNA MER1_type 125 330 0 209 238 0 0 chr11 32044742 32044784 -118738769 + T-rich Low_complexity Low_complexity 1 42 0 300 27 0 0 chr11 32046360 32046397 -118737156 + (CA)n Simple_repeat Simple_repeat 2 38 0 29 47 0 0 chr11 32046448 32046491 -118737062 + AT_rich Low_complexity Low_complexity 1 43 0 261 0 0 0 chr11 32046966 32046995 -118736558 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1186 267 110 7 chr11 32048490 32048935 -118734618 + LTR16C LTR ERVL 1 491 0 377 67 17 0 chr11 32049076 32049136 -118734417 - L1PB2 LINE L1 -2 6149 6089 336 262 13 7 chr11 32049604 32049700 -118733853 + MIR SINE MIR 49 142 -66 205 246 82 16 chr11 32049934 32049995 -118733558 + MIR SINE MIR 82 146 -62 1354 234 39 20 chr11 32050078 32050433 -118733120 - L1ME1 LINE L1 -8 6158 5797 1028 246 30 4 chr11 32050667 32050903 -118732650 - MLT1F LTR MaLR -45 497 256 * 1634 227 37 15 chr11 32050891 32051297 -118732256 + MLT1C LTR MaLR 52 466 -1 474 139 0 0 chr11 32051297 32051369 -118732184 - MLT1F LTR MaLR -470 72 1 841 335 90 19 chr11 32051370 32051956 -118731597 - L2 LINE L2 -190 3082 2454 300 355 36 29 chr11 32052368 32052506 -118731047 + L2 LINE L2 3132 3270 -2 455 323 56 41 chr11 32052663 32052858 -118730695 - L2 LINE L2 -2 3311 3114 925 78 7 14 chr11 32052979 32053120 -118730433 + (GAAA)n Simple_repeat Simple_repeat 4 143 0 2222 119 3 6 chr11 32053125 32053437 -118730116 + AluSx SINE Alu 1 311 -1 562 254 95 32 chr11 32053554 32053838 -118729715 - L1ME4a LINE L1 -203 5918 5617 194 329 37 0 chr11 32054513 32054595 -118728958 - MIR3 SINE MIR -9 199 115 213 350 77 8 chr11 32054893 32055010 -118728543 - MIR3 SINE MIR -72 136 12 1474 108 45 18 chr11 32055033 32055256 -118728297 + MER30 DNA MER1_type 2 230 0 229 278 48 0 chr11 32055264 32055341 -118728212 + MIR SINE MIR 71 144 -64 2061 119 19 19 chr11 32056410 32056534 -118727019 + AluSg SINE Alu 1 124 -186 270 0 0 0 chr11 32056534 32056564 -118726989 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 2061 119 19 19 chr11 32056564 32056749 -118726804 + AluSg SINE Alu 123 310 0 430 253 45 65 chr11 32056845 32056999 -118726554 + MIR SINE MIR 56 206 -56 206 158 26 0 chr11 32059024 32059062 -118724491 - MIR SINE MIR -13 249 211 207 268 42 14 chr11 32059749 32059820 -118723733 - MIR SINE MIR -108 154 82 1851 136 7 4 chr11 32060368 32060648 -118722905 + AluJb SINE Alu 22 302 -10 343 280 69 0 chr11 32060714 32060815 -118722738 + L1M4c LINE L1 1559 1852 -891 1120 309 102 30 chr11 32061590 32062747 -118720806 + L1M4c LINE L1 2819 4058 -2324 401 220 92 21 chr11 32062791 32062932 -118720621 - MLT1L LTR MaLR -26 589 439 378 212 0 35 chr11 32063169 32063254 -118720299 - MLT1L LTR MaLR -530 85 4 464 309 85 8 chr11 32063254 32063490 -118720063 + L1M4c LINE L1 4073 4326 -2056 229 200 29 14 chr11 32063517 32063587 -118719966 + (TA)n Simple_repeat Simple_repeat 2 72 0 376 194 0 0 chr11 32064689 32064751 -118718802 - MER45 DNA AcHobo 0 1581 1520 316 200 0 0 chr11 32064761 32064811 -118718742 - MER45 DNA AcHobo -903 50 1 456 276 21 14 chr11 32065060 32065205 -118718348 - MIR SINE MIR -5 257 112 1297 240 64 25 chr11 32065456 32065848 -118717705 + MLT1I LTR MaLR 1 407 -2 896 252 65 9 chr11 32065996 32066226 -118717327 - MIR SINE MIR 0 262 20 1942 13 35 0 chr11 32066229 32066460 -118717093 - L1PA2 LINE L1 0 6155 5917 2482 11 11 0 chr11 32066460 32066747 -118716806 + L1PA2 LINE L1 5624 5913 -242 741 250 60 63 chr11 32067081 32067381 -118716172 + MLT1K LTR MaLR 275 573 -15 826 285 42 0 chr11 32068123 32068337 -118715216 - MER58A DNA MER1_type 0 224 2 281 272 111 38 chr11 32068699 32068952 -118714601 + MIR SINE MIR 20 248 -14 281 342 26 9 chr11 32068973 32069087 -118714466 - MIR SINE MIR -145 117 2 354 313 0 0 chr11 32069592 32069691 -118713862 - MIR3 SINE MIR -18 190 92 879 119 21 62 chr11 32069773 32069966 -118713587 + MER53 DNA DNA 1 185 -4 192 125 0 0 chr11 32070058 32070090 -118713463 + (A)n Simple_repeat Simple_repeat 1 32 0 256 236 11 56 chr11 32070389 32070478 -118713075 - HAL1 LINE L1 -6 2501 2417 838 133 41 77 chr11 32070506 32070702 -118712851 + MER53 DNA DNA 1 189 0 362 301 0 26 chr11 32070786 32070899 -118712654 + MER81 DNA DNA 2 111 -3 469 329 26 0 chr11 32072393 32072545 -118711008 - MIR3 SINE MIR -37 171 16 371 365 18 6 chr11 32073028 32073195 -118710358 - L3 LINE CR1 -68 1509 1341 273 321 83 0 chr11 32073378 32073487 -118710066 + LTR33A LTR ERVL 71 188 -335 348 257 59 0 chr11 32073562 32073663 -118709890 + LTR33 LTR ERVL 415 521 0 277 331 38 87 chr11 32073663 32074032 -118709521 - L3 LINE CR1 -363 1214 864 246 81 0 0 chr11 32075253 32075290 -118708263 + (CA)n Simple_repeat Simple_repeat 2 38 0 1388 206 42 83 chr11 32076017 32076473 -118707080 + MLT2C2 LTR ERVL 1 437 -27 461 308 79 40 chr11 32076529 32076756 -118706797 - MIR SINE MIR -1 261 26 514 323 95 4 chr11 32076873 32077105 -118706448 - MIR SINE MIR -6 256 4 346 286 9 9 chr11 32080207 32080312 -118703241 + MLT1I LTR MaLR 99 203 -206 2098 182 28 9 chr11 32080424 32080863 -118702690 - LTR45B LTR ERV1 -43 446 1 421 232 26 80 chr11 32081185 32081336 -118702217 - MIR3 SINE MIR -63 145 3 518 287 112 26 chr11 32081941 32082365 -118701188 + L2 LINE L2 2684 3168 -145 348 83 0 0 chr11 32082365 32082413 -118701140 + (TG)n Simple_repeat Simple_repeat 2 49 0 518 287 112 26 chr11 32082413 32082573 -118700980 + L2 LINE L2 3168 3313 0 1158 243 68 66 chr11 32082951 32083469 -118700084 - LTR33 LTR ERVL 0 521 3 942 271 29 16 chr11 32083477 32083721 -118699832 - MIR SINE MIR -13 249 3 366 277 114 31 chr11 32084293 32084625 -118698928 - L1ME4a LINE L1 -46 6075 5695 293 274 17 42 chr11 32085733 32085856 -118697697 - MIR SINE MIR -84 124 4 267 244 78 9 chr11 32086258 32086373 -118697180 + LTR67 LTR ERVL 420 542 -15 270 214 0 0 chr11 32086616 32086672 -118696881 - MIR3 SINE MIR -14 194 139 22 0 0 0 chr11 32086931 32086953 -118696600 + AT_rich Low_complexity Low_complexity 1 22 0 740 265 109 0 chr11 32087637 32087848 -118695705 + MIR SINE MIR 28 261 -1 206 238 12 119 chr11 32088866 32088950 -118694603 + MIR3 SINE MIR 109 183 -25 327 330 73 52 chr11 32089122 32089452 -118694101 - L1MEc LINE L1 -4185 2211 1875 384 322 121 0 chr11 32089465 32089754 -118693799 - L1MEc LINE L1 -4576 1820 1497 445 256 33 33 chr11 32090021 32090236 -118693317 - L1MEc LINE L1 -5007 1198 984 1056 256 94 46 chr11 32091207 32091726 -118691827 + MLT1G LTR MaLR 1 574 -16 243 286 174 10 chr11 32092164 32092262 -118691291 - L3 LINE CR1 -4 1573 1460 968 290 106 64 chr11 32092587 32093118 -118690435 - L3 LINE CR1 -393 1184 632 605 230 132 0 chr11 32093372 32093524 -118690029 - MER5B DNA MER1_type -6 172 1 285 286 93 21 chr11 32093544 32093685 -118689868 + MIR SINE MIR 13 162 -61 212 376 128 0 chr11 32094525 32094642 -118688911 - L2 LINE L2 -2 3270 3139 609 196 78 11 chr11 32094663 32094842 -118688711 + L1MD3 LINE L1 7796 7986 -9 2372 70 0 0 chr11 32094843 32095163 -118688390 + AluY SINE Alu 1 320 0 1983 187 55 59 chr11 32095337 32095730 -118687823 - MLT1D LTR MaLR 0 505 113 2302 103 3 22 chr11 32095730 32096049 -118687504 + AluSp SINE Alu 1 313 0 1983 187 55 59 chr11 32096049 32096162 -118687391 - MLT1D LTR MaLR -392 113 1 1188 232 82 12 chr11 32096288 32096629 -118686924 - MLT1B LTR MaLR -25 365 1 190 351 81 40 chr11 32096668 32096842 -118686711 - L2 LINE L2 -536 2778 2598 2324 105 3 6 chr11 32096858 32097171 -118686382 + AluSx SINE Alu 1 312 0 334 274 85 52 chr11 32097237 32097390 -118686163 + L1MEd LINE L1 48 205 -5914 482 236 118 15 chr11 32097730 32097925 -118685628 + HAL1 LINE L1 1151 1365 -1142 463 219 26 0 chr11 32098071 32098185 -118685368 + HAL1 LINE L1 2243 2359 -148 1070 310 126 44 chr11 32098225 32099139 -118684414 + L2 LINE L2 440 1428 -1886 499 198 0 45 chr11 32099148 32099259 -118684294 + MIR SINE MIR 52 157 -105 964 187 61 98 chr11 32099415 32099741 -118683812 + MER2 DNA MER2_type 31 344 -1 595 313 97 37 chr11 32099742 32100062 -118683491 + L2 LINE L2 1477 1821 -1493 1377 208 20 41 chr11 32100062 32100356 -118683197 - AluJo SINE Alu -24 288 1 595 313 97 37 chr11 32100356 32100386 -118683167 + L2 LINE L2 1821 1848 -1466 602 192 8 8 chr11 32100488 32100618 -118682935 - MLT1A2 LTR MaLR 0 374 245 837 244 74 0 chr11 32100618 32100835 -118682718 + MIR SINE MIR 30 262 0 248 293 140 47 chr11 32100831 32100981 -118682572 + L2 LINE L2 3149 3312 -1 * 197 224 165 12 chr11 32101020 32101105 -118682448 - L2 LINE L2 -1329 1985 1888 257 241 52 0 chr11 32101151 32101209 -118682344 - MIR SINE MIR -76 186 126 215 30 0 30 chr11 32104532 32104565 -118678988 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1961 105 91 0 chr11 32104685 32104970 -118678583 - AluY SINE Alu 0 311 1 409 333 98 11 chr11 32105040 32105304 -118678249 - L1 LINE L1 -3090 3056 2770 2337 91 3 0 chr11 32105916 32106214 -118677339 + AluSx SINE Alu 2 300 -12 21 0 0 0 chr11 32106866 32106887 -118676666 + AT_rich Low_complexity Low_complexity 1 21 0 962 216 58 149 chr11 32107997 32108681 -118674872 - L1ME3A LINE L1 -15 6155 5562 2184 103 0 0 chr11 32108681 32108990 -118674563 - AluSg SINE Alu 0 309 1 962 216 58 149 chr11 32108990 32109155 -118674398 - L1ME3A LINE L1 -608 5562 5383 391 221 168 38 chr11 32109237 32109393 -118674160 - MIR SINE MIR -43 165 16 188 307 40 59 chr11 32109385 32109486 -118674067 - L2 LINE L2 -603 2711 2613 * 571 236 124 12 chr11 32109730 32109972 -118673581 - L1ME4a LINE L1 -79 6042 5774 312 245 20 31 chr11 32109974 32110072 -118673481 - L1ME4a LINE L1 -392 5729 5633 533 234 0 19 chr11 32111014 32111148 -118672405 + MER5A DNA MER1_type 4 134 -55 307 200 0 0 chr11 32111182 32111237 -118672316 + MER5A DNA MER1_type 1 55 -134 1271 151 30 17 chr11 32111238 32111470 -118672083 + AluJo SINE Alu 66 300 -12 611 236 16 8 chr11 32111470 32111593 -118671960 + MER5A DNA MER1_type 66 189 0 925 190 20 25 chr11 32111625 32111825 -118671728 - MER58A DNA MER1_type -24 200 2 592 247 28 67 chr11 32111838 32112016 -118671537 + MER5B DNA MER1_type 5 175 -3 202 220 119 0 chr11 32113195 32113254 -118670299 - MIR3 SINE MIR -52 156 91 1414 88 51 225 chr11 32113473 32113846 -118669707 + AluSx SINE Alu 1 308 -4 358 253 0 24 chr11 32113853 32113936 -118669617 - MER5A DNA MER1_type -60 129 49 495 287 45 49 chr11 32115300 32115523 -118668030 + L1ME4a LINE L1 5255 5476 -2332 56 0 0 0 chr11 32115530 32115586 -118667967 + AT_rich Low_complexity Low_complexity 1 56 0 298 256 97 88 chr11 32115598 32115885 -118667668 + L1ME4a LINE L1 5497 5791 -330 3883 208 52 19 chr11 32115885 32116720 -118666833 - MER21B LTR ERV1 -1 862 1 298 256 97 88 chr11 32116720 32116866 -118666687 + L1ME4a LINE L1 5791 5934 -187 1611 187 58 32 chr11 32116874 32117173 -118666380 - MLT1B LTR MaLR 0 390 77 2321 158 10 2 chr11 32117173 32117573 -118665980 + MER57A LTR ERV1 1 403 0 1611 187 58 32 chr11 32117573 32117653 -118665900 - MLT1B LTR MaLR -313 77 1 1589 194 43 7 chr11 32117682 32118161 -118665392 + AluSq SINE Alu 1 490 0 251 175 18 0 chr11 32118176 32118233 -118665320 + GA-rich Low_complexity Low_complexity 4 61 0 257 355 28 0 chr11 32118496 32118603 -118664950 + MIR SINE MIR 97 206 -56 216 0 0 0 chr11 32118637 32118661 -118664892 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1093 74 0 0 chr11 32118661 32118789 -118664764 - AluYb8 SINE Alu -187 131 1 2369 66 3 7 chr11 32118798 32119100 -118664453 - AluY SINE Alu -10 301 1 2219 94 0 10 chr11 32119123 32119422 -118664131 - AluSg SINE Alu -14 296 1 300 299 47 0 chr11 32119859 32119966 -118663587 + MLT1K LTR MaLR 135 246 -342 494 287 0 0 chr11 32120045 32120167 -118663386 + MER94 DNA DNA 13 134 0 247 306 102 6 chr11 32120211 32120368 -118663185 + MLT1K LTR MaLR 363 534 -54 2526 137 44 0 chr11 32120906 32121316 -118662237 - MSTA LTR MaLR 0 428 1 3105 194 62 67 chr11 32121656 32122728 -118660825 - L1MC4 LINE L1 0 8042 6976 414 283 49 54 chr11 32123588 32123772 -118659781 + MIR3 SINE MIR 19 201 -7 257 402 57 33 chr11 32124248 32124703 -118658850 + L2 LINE L2 2047 2512 -802 373 224 0 0 chr11 32124830 32124915 -118658638 + MIR SINE MIR 169 253 -9 275 275 55 83 chr11 32125076 32125294 -118658259 - MLT1J2 LTR MaLR -205 245 34 2262 58 0 7 chr11 32125578 32125855 -118657698 - AluSg SINE Alu -35 275 1 25 0 0 0 chr11 32125855 32125880 -118657673 + AT_rich Low_complexity Low_complexity 1 25 0 207 146 0 0 chr11 32126032 32126073 -118657480 + (CA)n Simple_repeat Simple_repeat 2 42 0 271 238 9 9 chr11 32126160 32126265 -118657288 + CT-rich Low_complexity Low_complexity 4 108 0 2037 117 0 31 chr11 32127610 32127952 -118655601 - AluSg SINE Alu 0 335 3 341 230 128 128 chr11 32128054 32128241 -118655312 - MIR SINE MIR -22 240 54 963 199 5 5 chr11 32128245 32128441 -118655112 + MER6B DNA MER2_type 12 207 -3 630 259 109 23 chr11 32128874 32129094 -118654459 + L2 LINE L2 3075 3313 0 402 259 29 65 chr11 32129276 32129415 -118654138 - MIR SINE MIR -109 153 20 294 280 11 0 chr11 32130475 32130568 -118652985 + L1ME4a LINE L1 5959 6052 -69 1828 249 63 28 chr11 32130926 32131529 -118652024 + MLT1E3 LTR MaLR 1 624 0 343 267 23 61 chr11 32131730 32131861 -118651692 - MIR SINE MIR 0 262 137 432 206 0 22 chr11 32131922 32132014 -118651539 + MER21B LTR ERV1 1 90 -773 2924 234 74 8 chr11 32132036 32132805 -118650748 + MER21B LTR ERV1 19 838 -25 1260 162 26 0 chr11 32133463 32133728 -118649825 - MER33 DNA MER1_type 0 324 53 6997 65 5 3 chr11 32133757 32135581 -118647972 - L1PA8 LINE L1 -10 6162 4339 404 188 47 0 chr11 32135713 32135798 -118647755 + MER106B DNA MER1_type 896 984 -75 301 136 0 17 chr11 32135800 32135859 -118647694 - MLT2D LTR ERVL -2 518 461 256 171 13 40 chr11 32135946 32136022 -118647531 - MER106B DNA MER1_type -81 978 905 594 198 21 37 chr11 32136125 32136283 -118647270 + MER33 DNA MER1_type 1 147 -101 1022 224 34 81 chr11 32136301 32136684 -118646869 - MLT2D LTR ERVL -49 365 1 727 153 127 21 chr11 32136888 32137077 -118646476 - MER3 DNA MER1_type 0 209 1 837 283 5 14 chr11 32137093 32137312 -118646241 + MIR SINE MIR 46 262 0 433 256 62 80 chr11 32138852 32139028 -118644525 + MIR3 SINE MIR 36 208 0 583 58 35 0 chr11 32140951 32141038 -118642515 + (TTCC)n Simple_repeat Simple_repeat 4 93 0 930 164 7 7 chr11 32141422 32141568 -118641985 + FRAM SINE Alu 1 146 -30 543 107 0 0 chr11 32141569 32141653 -118641900 + (TC)n Simple_repeat Simple_repeat 2 85 0 21 36 0 0 chr11 32141653 32141681 -118641872 + AT_rich Low_complexity Low_complexity 1 28 0 2301 90 0 0 chr11 32141795 32142083 -118641470 - AluY SINE Alu -21 290 3 276 149 0 0 chr11 32143170 32143217 -118640336 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 189 352 42 0 chr11 32144445 32144516 -118639037 + MIR SINE MIR 23 96 -166 210 220 34 17 chr11 32144610 32144669 -118638884 + CT-rich Low_complexity Low_complexity 5 64 0 244 260 82 0 chr11 32145110 32145183 -118638370 - MIR SINE MIR -94 114 36 287 307 0 0 chr11 32145818 32145893 -118637660 + L2 LINE L2 3188 3262 -10 744 12 0 0 chr11 32146213 32146298 -118637255 + (GGAAA)n Simple_repeat Simple_repeat 1 85 0 267 157 0 0 chr11 32146298 32146349 -118637204 + GA-rich Low_complexity Low_complexity 2 52 0 311 43 0 22 chr11 32146358 32146404 -118637149 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 258 224 13 79 chr11 32146606 32146682 -118636871 - MIR SINE MIR -109 153 83 880 322 0 4 chr11 32147323 32147559 -118635994 - MIR SINE MIR -23 239 5 207 390 149 4 chr11 32148002 32148230 -118635323 + L3 LINE CR1 1263 1523 -54 255 186 0 0 chr11 32148282 32148325 -118635228 + L2 LINE L2 2602 2644 -670 339 136 0 0 chr11 32148353 32148412 -118635141 + (CA)n Simple_repeat Simple_repeat 1 59 0 255 333 0 0 chr11 32149054 32149123 -118634430 + L2 LINE L2 3202 3270 -2 21 36 0 0 chr11 32149191 32149219 -118634334 + AT_rich Low_complexity Low_complexity 1 28 0 1820 211 66 23 chr11 32150089 32150601 -118632952 + MLT1F LTR MaLR 1 534 -8 488 248 41 8 chr11 32150930 32151051 -118632502 - MIR SINE MIR -37 225 101 787 226 68 9 chr11 32151051 32151272 -118632281 - MLT1K LTR MaLR -120 468 235 407 292 23 41 chr11 32151316 32151487 -118632066 - MLT1K LTR MaLR -419 169 2 376 272 11 0 chr11 32151650 32151742 -118631811 - MER63C DNA MER1_type 0 930 838 555 134 0 12 chr11 32151764 32151846 -118631707 + AluJ/FLAM SINE Alu 21 101 -211 1865 187 112 24 chr11 32151850 32152352 -118631201 - MER63C DNA MER1_type -374 556 11 369 298 32 8 chr11 32152396 32152520 -118631033 - L2 LINE L2 -527 2787 2661 205 341 12 12 chr11 32152588 32152673 -118630880 - MIR SINE MIR -29 233 149 2428 269 61 30 chr11 32155415 32156581 -118626972 + L2 LINE L2 2122 3313 0 304 268 54 83 chr11 32157098 32157266 -118626287 + MER117 DNA MER1_type 1 163 -34 232 383 22 26 chr11 32157463 32157732 -118625821 - L2 LINE L2 -436 2878 2611 371 308 107 13 chr11 32158146 32158380 -118625173 - MER102a DNA MER1_type -1 329 74 459 242 137 20 chr11 32158610 32158763 -118624790 - MIR SINE MIR -3 259 89 446 217 69 3 chr11 32159383 32159572 -118623981 - MIR SINE MIR -4 258 2 395 37 0 19 chr11 32160486 32160540 -118623013 + (TC)n Simple_repeat Simple_repeat 2 54 0 408 247 63 84 chr11 32162040 32162279 -118621274 + MER106A DNA MER1_type 1 234 -2 326 240 0 19 chr11 32162295 32162399 -118621154 - L1ME LINE L1 -344 5801 5700 6240 200 23 24 chr11 32162410 32165378 -118618175 + L1MC1 LINE L1 3366 6329 -4 484 283 119 21 chr11 32165375 32165796 -118617757 - L1ME LINE L1 -443 5702 5241 * 419 263 111 31 chr11 32165848 32166004 -118617549 - L1ME LINE L1 -2912 3217 3075 1639 94 0 5 chr11 32166004 32166227 -118617326 - AluY SINE Alu -9 302 81 419 263 111 31 chr11 32166227 32166905 -118616648 - L1ME LINE L1 -3054 3075 2286 722 243 61 12 chr11 32166911 32167158 -118616395 - LTR33A LTR ERVL -1 522 264 779 139 22 7 chr11 32167326 32167463 -118616090 - L1MC4 LINE L1 -1061 6981 6843 714 89 0 10 chr11 32167593 32167694 -118615859 - AluY SINE Alu -7 304 205 300 248 19 9 chr11 32167698 32167803 -118615750 - L1ME LINE L1 -3872 2257 2152 362 291 46 62 chr11 32167805 32168054 -118615499 - L1MEc LINE L1 -3980 2159 1944 230 230 27 0 chr11 32168118 32168192 -118615361 + CT-rich Low_complexity Low_complexity 1 76 0 716 211 67 5 chr11 32168724 32168918 -118614635 + L1MC4 LINE L1 6853 7058 -984 1845 182 0 0 chr11 32168929 32169258 -118614295 - MER47A DNA MER2_type 0 366 38 1575 229 165 21 chr11 32169292 32169873 -118613680 + L1MC4 LINE L1 7238 7902 -140 21 36 0 0 chr11 32169911 32169939 -118613614 + AT_rich Low_complexity Low_complexity 1 28 0 359 293 34 13 chr11 32170241 32170480 -118613073 - L1MEc LINE L1 -4727 1583 1340 454 209 37 70 chr11 32170505 32170692 -118612861 - L1MEc LINE L1 -4885 1234 1054 655 328 34 32 chr11 32170710 32171146 -118612407 - L1MEc LINE L1 -5260 859 423 2397 154 42 2 chr11 32171319 32171729 -118611824 - MSTB LTR MaLR 0 426 1 9238 172 17 11 chr11 32171729 32173370 -118610183 - MSTB-int LTR MaLR 0 1651 1 2287 145 27 63 chr11 32173370 32173812 -118609741 - MSTB LTR MaLR 0 426 1 2179 141 14 3 chr11 32174370 32174739 -118608814 + MER34B LTR ERV1 1 373 -192 1203 181 37 15 chr11 32174805 32175114 -118608439 + LTR10B LTR ERV1 215 547 0 1022 144 16 5 chr11 32175114 32175308 -118608245 + MER34B LTR ERV1 369 564 -1 255 320 78 19 chr11 32175397 32175500 -118608053 + MIR SINE MIR 19 127 -81 243 292 183 8 chr11 32175884 32176004 -118607549 + MIR SINE MIR 120 260 -2 460 318 167 5 chr11 32177292 32177490 -118606063 - MIR SINE MIR -18 244 15 241 207 52 0 chr11 32177739 32177797 -118605756 + L2 LINE L2 2685 2745 -569 237 305 6 166 chr11 32178146 32178477 -118605076 + L2 LINE L2 2995 3272 0 3879 127 28 16 chr11 32178865 32179510 -118604043 - MER39B LTR ERV1 0 653 1 787 271 62 4 chr11 32180069 32180313 -118603240 - MIR SINE MIR 0 262 5 448 284 13 124 chr11 32180853 32181078 -118602475 - L2 LINE L2 -39 3233 3034 570 164 17 0 chr11 32181270 32181386 -118602167 - MER31A LTR ERV1 0 485 368 910 121 42 77 chr11 32181397 32181603 -118601950 - LTR48 LTR ERV1 0 787 437 1332 199 130 19 chr11 32181603 32182034 -118601519 - LTR48 LTR ERV1 -303 484 6 1218 180 31 96 chr11 32182040 32182298 -118601255 - MER31B LTR ERV1 -107 359 133 2419 70 0 3 chr11 32182298 32182599 -118600954 - AluY SINE Alu -11 300 1 1218 180 31 96 chr11 32182599 32182724 -118600829 - MER31B LTR ERV1 -333 133 1 1017 223 59 13 chr11 32182840 32183169 -118600384 + MSTD LTR MaLR 1 396 0 316 330 10 10 chr11 32184028 32184131 -118599422 - L2 LINE L2 -9 3304 3202 854 152 0 0 chr11 32184354 32184486 -118599067 - FLAM_C SINE Alu -1 132 1 791 274 47 8 chr11 32185222 32185456 -118598097 + MIR SINE MIR 3 245 -17 200 122 0 24 chr11 32185470 32185511 -118598042 + (TTA)n Simple_repeat Simple_repeat 2 41 0 751 323 101 30 chr11 32185543 32186010 -118597543 + L3 LINE CR1 1074 1573 -4 331 277 79 20 chr11 32186127 32186228 -118597325 - MER91A DNA MER1_type -1 195 89 312 309 195 41 chr11 32186228 32186351 -118597202 - MER91A DNA MER1_type -23 173 32 231 97 0 0 chr11 32187020 32187051 -118596502 + LTR67 LTR ERVL 519 549 -8 737 254 108 26 chr11 32187221 32187453 -118596100 - MIR SINE MIR -11 251 1 180 0 0 0 chr11 32189869 32189889 -118593664 + (A)n Simple_repeat Simple_repeat 1 20 0 245 255 0 0 chr11 32190028 32190079 -118593474 + L2 LINE L2 3263 3313 0 386 230 169 27 chr11 32190130 32190278 -118593275 + MIR SINE MIR 65 233 -29 1443 150 16 0 chr11 32190359 32190612 -118592941 + MER34C LTR ERV1 329 585 0 195 337 0 51 chr11 32190662 32190760 -118592793 - MIR SINE MIR -50 212 120 334 270 0 0 chr11 32190817 32190891 -118592662 - L2 LINE L2 -8 3305 3232 2250 109 0 0 chr11 32191833 32192127 -118591426 + AluSx SINE Alu 1 294 -18 219 231 46 15 chr11 32192655 32192720 -118590833 - L2 LINE L2 -74 3239 3173 29 0 0 0 chr11 32192939 32192968 -118590585 + AT_rich Low_complexity Low_complexity 1 29 0 272 265 0 15 chr11 32193347 32193415 -118590138 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 2588 151 15 24 chr11 32193917 32194200 -118589353 + MLT1C LTR MaLR 1 280 -187 2071 170 0 37 chr11 32194200 32194577 -118588976 - MLT1A1 LTR MaLR -2 363 1 2588 151 15 24 chr11 32194577 32194749 -118588804 + MLT1C LTR MaLR 280 452 -15 754 206 138 82 chr11 32194749 32195040 -118588513 + MLT1A1 LTR MaLR 1 307 -58 660 296 25 53 chr11 32195247 32195490 -118588063 + MIR SINE MIR 20 255 -7 194 325 266 7 chr11 32195832 32195986 -118587567 - MIR3 SINE MIR 0 208 15 2455 94 0 0 chr11 32196231 32196539 -118587014 - AluSx SINE Alu -4 308 1 485 353 53 56 chr11 32197434 32198036 -118585517 - L2 LINE L2 -3 3269 2584 219 88 0 0 chr11 32199540 32199574 -118583979 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 411 211 0 0 chr11 32199856 32199946 -118583607 + (TA)n Simple_repeat Simple_repeat 2 91 0 1217 177 28 11 chr11 32200275 32200557 -118582996 + MER33 DNA MER1_type 35 321 -3 332 297 57 92 chr11 32200557 32200961 -118582592 + L2 LINE L2 2877 3266 -47 229 154 0 31 chr11 32200979 32201044 -118582509 + (TA)n Simple_repeat Simple_repeat 2 64 0 417 66 0 0 chr11 32201052 32201113 -118582440 + (TC)n Simple_repeat Simple_repeat 2 62 0 294 183 0 0 chr11 32201282 32201353 -118582200 + (TA)n Simple_repeat Simple_repeat 1 71 0 207 0 0 0 chr11 32201353 32201376 -118582177 + (GA)n Simple_repeat Simple_repeat 2 24 0 399 250 73 44 chr11 32202228 32202364 -118581189 + MER5A DNA MER1_type 47 186 -3 1937 161 0 3 chr11 32206160 32206452 -118577101 + AluJb SINE Alu 2 292 -20 185 269 269 8 chr11 32209669 32209788 -118573765 + MIR3 SINE MIR 58 207 -1 682 75 0 0 chr11 32210437 32210530 -118573023 - L1PA6 LINE L1 -6 6148 6056 238 350 98 21 chr11 32210990 32211184 -118572369 - MIR SINE MIR 0 262 54 312 333 10 43 chr11 32211581 32211788 -118571765 + HAL1b LINE L1 391 590 -758 1943 160 10 10 chr11 32212012 32212319 -118571234 - AluJb SINE Alu -5 307 1 311 312 46 93 chr11 32212338 32212996 -118570557 + L1ME4a LINE L1 4080 4706 -1440 23 33 0 0 chr11 32213018 32213048 -118570505 + AT_rich Low_complexity Low_complexity 1 30 0 1014 264 105 19 chr11 32213697 32214239 -118569314 + L1ME4a LINE L1 5507 6095 -26 1456 212 73 28 chr11 32214382 32214736 -118568817 - MLT1A2 LTR MaLR -4 370 1 23 0 0 0 chr11 32214950 32214973 -118568580 + AT_rich Low_complexity Low_complexity 1 23 0 1838 146 25 0 chr11 32215716 32215990 -118567563 + AluSq SINE Alu 1 281 -32 1182 57 23 11 chr11 32215991 32216166 -118567387 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 2284 79 4 0 chr11 32216424 32216703 -118566850 + AluSp SINE Alu 1 280 -33 188 83 0 28 chr11 32216705 32216741 -118566812 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1550 178 40 74 chr11 32217825 32218229 -118565324 + MLT1B LTR MaLR 1 390 0 286 230 230 18 chr11 32219011 32219124 -118564429 - L1ME LINE L1 -525 5596 5460 408 123 0 0 chr11 32220415 32220472 -118563081 + Alu SINE Alu 237 293 -19 505 251 97 40 chr11 32220600 32220775 -118562778 - MIR SINE MIR -32 230 46 271 313 73 104 chr11 32223158 32223417 -118560136 - L2 LINE L2 -5 3267 3017 243 307 89 0 chr11 32224723 32224824 -118558729 - MIR SINE MIR -7 255 146 302 184 0 0 chr11 32224870 32224919 -118558634 + L2 LINE L2 3213 3261 -11 2387 67 20 3 chr11 32225295 32225594 -118557959 + AluY SINE Alu 1 304 -7 798 338 76 47 chr11 32225802 32226646 -118556907 - L2 LINE L2 -114 3158 2295 201 108 0 0 chr11 32227103 32227140 -118556413 + (A)n Simple_repeat Simple_repeat 1 37 0 539 289 118 48 chr11 32229234 32229462 -118554091 - MIR SINE MIR -6 256 13 348 260 24 16 chr11 32230032 32230087 -118553466 + (TA)n Simple_repeat Simple_repeat 2 55 -74 1342 220 30 48 chr11 32230087 32230459 -118553094 + MLT1A1 LTR MaLR 1 365 0 348 260 24 16 chr11 32230459 32230530 -118553023 + (TA)n Simple_repeat Simple_repeat 55 129 0 659 288 0 7 chr11 32230615 32230761 -118552792 - MIR SINE MIR -114 148 4 214 358 25 0 chr11 32230851 32230932 -118552621 - L2 LINE L2 -83 3189 3107 234 270 111 32 chr11 32232038 32232164 -118551389 - MIR SINE MIR -50 212 77 21 0 0 0 chr11 32232235 32232256 -118551297 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 32233154 32233175 -118550378 + AT_rich Low_complexity Low_complexity 1 21 0 216 274 32 53 chr11 32233282 32233377 -118550176 + MIR SINE MIR 5 97 -165 581 199 40 189 chr11 32234954 32235308 -118548245 + L1MC4a LINE L1 6734 6994 -967 1014 219 64 101 chr11 32235308 32235874 -118547679 + MLT1H LTR MaLR 1 545 -4 581 199 40 189 chr11 32235874 32236038 -118547515 + L1MC4a LINE L1 6994 7181 -780 302 323 55 18 chr11 32236188 32236352 -118547201 + L1MC5 LINE L1 7276 7445 -516 362 224 68 59 chr11 32236384 32236603 -118546950 + L1MC5 LINE L1 7548 7768 -193 353 251 71 33 chr11 32237196 32237379 -118546174 - L1ME4a LINE L1 -84 6037 5848 406 312 90 17 chr11 32237485 32237786 -118545767 - L1ME4a LINE L1 -430 5691 5369 270 341 14 58 chr11 32238993 32239131 -118544422 + L2 LINE L2 3136 3267 -5 670 205 99 29 chr11 32239467 32239638 -118543915 + LTR41 LTR ERVL 1 183 -590 2199 128 59 47 chr11 32239892 32240268 -118543285 + MSTC LTR MaLR 1 384 -44 2125 122 13 10 chr11 32240268 32240571 -118542982 - AluSx SINE Alu -8 304 1 2199 128 59 47 chr11 32240571 32240617 -118542936 + MSTC LTR MaLR 384 428 0 2255 49 59 3 chr11 32241128 32241416 -118542137 + AluY SINE Alu 1 304 -7 357 212 150 44 chr11 32241989 32242102 -118541451 + L2 LINE L2 3189 3313 0 189 0 0 0 chr11 32242621 32242642 -118540911 + (A)n Simple_repeat Simple_repeat 1 21 0 384 260 45 48 chr11 32242751 32243020 -118540533 - L1MC5 LINE L1 -179 7782 7515 228 343 0 0 chr11 32244272 32244339 -118539214 - L2 LINE L2 0 3272 3206 893 316 61 25 chr11 32246368 32246763 -118536790 - L2 LINE L2 -79 3234 2826 344 286 244 35 chr11 32247099 32247410 -118536143 + L3 LINE CR1 1167 1542 -35 21 0 0 0 chr11 32249065 32249086 -118534467 + AT_rich Low_complexity Low_complexity 1 21 0 472 204 107 92 chr11 32250650 32250846 -118532707 + L1MD2 LINE L1 5684 5882 -477 22 56 0 0 chr11 32250894 32250930 -118532623 + AT_rich Low_complexity Low_complexity 1 36 0 459 216 0 0 chr11 32250942 32251058 -118532495 + GA-rich Low_complexity Low_complexity 3 118 0 962 247 23 5 chr11 32251082 32251301 -118532252 + MER58A DNA MER1_type 2 224 0 304 247 14 82 chr11 32251324 32251470 -118532083 + L1ME4a LINE L1 5986 6121 0 33 0 0 0 chr11 32251589 32251622 -118531931 + AT_rich Low_complexity Low_complexity 1 33 0 1869 139 11 4 chr11 32251622 32251903 -118531650 - AluSx SINE Alu -27 285 3 214 291 10 97 chr11 32252746 32252779 -118530774 + MIR SINE MIR 167 201 -61 1972 145 3 3 chr11 32252779 32253076 -118530477 + AluSx SINE Alu 1 297 -15 214 291 10 97 chr11 32253076 32253145 -118530408 + MIR SINE MIR 201 260 -2 278 222 256 40 chr11 32253514 32253690 -118529863 + MIR SINE MIR 15 228 -34 209 379 0 0 chr11 32254161 32254227 -118529326 - L2 LINE L2 -220 3052 2987 716 200 0 8 chr11 32254803 32254928 -118528625 + FLAM_C SINE Alu 1 124 -9 303 175 0 0 chr11 32255360 32255417 -118528136 + A-rich Low_complexity Low_complexity 1 57 0 375 353 14 7 chr11 32255486 32255625 -118527928 - MIR3 SINE MIR -68 140 1 2410 155 36 7 chr11 32255973 32256393 -118527160 + MSTB1 LTR MaLR 1 432 0 239 234 75 43 chr11 32258191 32258285 -118525268 - MER91C DNA MER1_type -22 118 22 208 208 0 21 chr11 32260038 32260086 -118523467 - L2 LINE L2 -2 3311 3265 222 343 49 20 chr11 32260479 32260581 -118522972 - L2 LINE L2 0 3313 3209 201 355 13 32 chr11 32260788 32260943 -118522610 - L2 LINE L2 -802 2512 2361 616 280 79 16 chr11 32261303 32261681 -118521872 - L1M4 LINE L1 -2134 4012 3611 1657 316 43 50 chr11 32261760 32262913 -118520640 - HERVI LTR ERV1 -216 6433 5289 2243 106 3 10 chr11 32263529 32263840 -118519713 - AluSg SINE Alu -1 309 1 1134 331 10 8 chr11 32263946 32264438 -118519115 - HERVI LTR ERV1 -2029 5756 5264 2029 109 26 10 chr11 32264489 32264802 -118518751 + LTR19C LTR ERV1 98 415 -364 602 296 80 46 chr11 32265072 32265730 -118517823 - HERVI LTR ERV1 -4558 2091 1624 323 315 0 37 chr11 32266084 32266246 -118517307 + CT-rich Low_complexity Low_complexity 2 157 0 520 62 0 25 chr11 32266262 32266342 -118517211 - LTR18B LTR ERVL -269 345 268 455 133 0 13 chr11 32266388 32266463 -118517090 - LTR18B LTR ERVL -209 405 332 565 343 8 4 chr11 32266530 32266769 -118516784 - HERVI LTR ERV1 -6768 1017 778 755 275 97 34 chr11 32267843 32268104 -118515449 - L1M4 LINE L1 -2587 3559 3316 3310 121 6 22 chr11 32268104 32268609 -118514944 + LOR1a LTR ERV1 1 497 0 755 275 97 34 chr11 32268609 32269056 -118514497 - L1M4 LINE L1 -2830 3316 2806 1228 284 95 5 chr11 32269101 32269573 -118513980 + L2 LINE L2 2534 3070 -243 215 359 76 0 chr11 32272270 32272362 -118511191 + L2 LINE L2 3197 3295 -18 2433 91 0 0 chr11 32272948 32273255 -118510298 - AluSg SINE Alu -3 307 1 2036 136 3 0 chr11 32273400 32273686 -118509867 + AluSq SINE Alu 1 287 -26 603 40 0 0 chr11 32273686 32273760 -118509793 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 418 249 24 30 chr11 32275104 32275273 -118508280 + L1MEd LINE L1 1387 1554 -4976 * 2840 189 23 14 chr11 32275268 32275914 -118507639 + L1MA4 LINE L1 4698 5349 -797 * 8853 73 1 3 chr11 32275887 32278001 -118505552 + L1PA7 LINE L1 4041 6150 -4 5544 138 12 38 chr11 32277994 32278996 -118504557 + L1MA4 LINE L1 5316 6291 -9 * 22 0 0 0 chr11 32278996 32279018 -118504535 + AT_rich Low_complexity Low_complexity 1 22 0 582 256 103 34 chr11 32279020 32279486 -118504067 + L1MEd LINE L1 1544 2102 -4549 385 336 78 37 chr11 32279717 32279988 -118503565 + L1MEd LINE L1 2403 2684 -4037 742 250 105 16 chr11 32279995 32280299 -118503254 + L1MEd LINE L1 2643 2973 -3567 23 0 0 0 chr11 32280728 32280751 -118502802 + AT_rich Low_complexity Low_complexity 1 23 0 216 58 47 70 chr11 32281221 32281307 -118502246 + (TTATA)n Simple_repeat Simple_repeat 5 88 0 27 0 0 0 chr11 32281523 32281550 -118502003 + AT_rich Low_complexity Low_complexity 1 27 0 835 179 12 18 chr11 32281654 32281822 -118501731 + L1M4 LINE L1 5576 5742 -432 2546 48 0 13 chr11 32281991 32282303 -118501250 - AluY SINE Alu -3 308 1 1561 313 63 36 chr11 32283101 32283952 -118499601 + L2 LINE L2 360 1233 -2081 607 278 113 10 chr11 32283961 32284155 -118499398 + MER20B DNA MER1_type 15 228 -555 752 165 0 16 chr11 32284197 32284324 -118499229 - FLAM_C SINE Alu -18 125 1 1244 235 81 24 chr11 32284333 32284789 -118498764 + MER20B DNA MER1_type 301 782 -1 1654 278 122 11 chr11 32284791 32285495 -118498058 + L2 LINE L2 1215 1996 -1318 578 300 51 51 chr11 32285495 32285848 -118497705 + MERVL LTR ERVL 3141 3493 -1992 1122 329 37 12 chr11 32285857 32286343 -118497210 + MERVL LTR ERVL 3595 4092 -1672 682 343 70 11 chr11 32286355 32286813 -118496740 + MERVL LTR ERVL 4432 4916 -569 22 0 0 0 chr11 32288812 32288834 -118494719 + AT_rich Low_complexity Low_complexity 1 22 0 27 62 0 0 chr11 32290072 32290120 -118493433 + AT_rich Low_complexity Low_complexity 1 48 0 824 291 107 13 chr11 32291363 32291672 -118491881 + MLT1J LTR MaLR 4 341 -170 8785 16 0 0 chr11 32293593 32295380 -118488173 - L1HS LINE L1 -4 6151 4365 1200 21 0 0 chr11 32295373 32295517 -118488036 + L1HS LINE L1 4218 4361 -1785 * 223 323 46 0 chr11 32296269 32296334 -118487219 + L2 LINE L2 3246 3313 0 1089 185 24 58 chr11 32296350 32296642 -118486911 + MER44D DNA MER2_type 1 552 -57 197 68 40 54 chr11 32296642 32296716 -118486837 + (TA)n Simple_repeat Simple_repeat 2 74 0 384 164 0 0 chr11 32296716 32296777 -118486776 + MER44D DNA MER2_type 519 579 -26 1602 215 98 44 chr11 32297103 32297582 -118485971 + MLT1D LTR MaLR 1 505 0 7341 173 61 52 chr11 32297882 32299588 -118483965 + L1MA4A LINE L1 13 2049 -4799 2531 74 0 0 chr11 32299588 32299897 -118483656 - AluY SINE Alu -2 309 1 7341 173 61 52 chr11 32299897 32300788 -118482765 + L1MA4A LINE L1 2049 2931 -3917 2184 143 35 22 chr11 32300788 32300978 -118482575 + MSTA LTR MaLR 1 187 -241 2041 139 0 7 chr11 32300978 32301279 -118482274 + AluSx SINE Alu 1 299 -13 2184 143 35 22 chr11 32301279 32301458 -118482095 + MSTA LTR MaLR 187 375 -53 14295 162 33 10 chr11 32301485 32305461 -118478092 + L1MA4A LINE L1 2930 6999 -6 354 258 31 127 chr11 32305476 32305636 -118477917 - L1ME LINE L1 -338 5783 5656 1717 165 7 7 chr11 32305636 32305927 -118477626 + AluJb SINE Alu 1 291 -21 354 258 31 127 chr11 32305927 32306026 -118477527 - L1ME LINE L1 -465 5656 5549 393 393 0 0 chr11 32306300 32306417 -118477136 + L2 LINE L2 3137 3253 -19 2493 119 17 5 chr11 32306472 32306768 -118476785 - L1MA4A LINE L1 -5 6298 5994 432 0 0 0 chr11 32306768 32306816 -118476737 + (CA)n Simple_repeat Simple_repeat 2 49 0 2493 119 17 5 chr11 32306816 32306932 -118476621 - L1MA4A LINE L1 -309 5994 5881 1005 133 75 0 chr11 32307104 32307277 -118476276 + L1M2 LINE L1 2 187 -6662 379 284 63 47 chr11 32308080 32308207 -118475346 + L2 LINE L2 3137 3265 -7 334 303 123 52 chr11 32308249 32308404 -118475149 + MER115 DNA AcHobo 67 232 -461 3193 152 44 5 chr11 32308760 32309332 -118474221 + L1PB4 LINE L1 5559 6152 -4 336 305 11 0 chr11 32309335 32309430 -118474123 + MIR SINE MIR 147 242 -20 29 0 0 0 chr11 32309991 32310020 -118473533 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 32311622 32311643 -118471910 + AT_rich Low_complexity Low_complexity 1 21 0 436 259 0 22 chr11 32313455 32313594 -118469959 - L1ME2 LINE L1 0 6164 6029 774 296 21 39 chr11 32313953 32314233 -118469320 - MLT1J LTR MaLR -6 505 231 2352 104 0 0 chr11 32314311 32314619 -118468934 - AluSc SINE Alu -1 308 1 2068 129 0 0 chr11 32314986 32315303 -118468250 - AluSx SINE Alu 0 319 3 900 322 96 50 chr11 32315351 32315685 -118467868 - L2 LINE L2 -7 3306 2989 1509 128 18 0 chr11 32315685 32315911 -118467642 - MER30 DNA MER1_type 0 230 1 900 322 96 50 chr11 32315911 32316484 -118467069 - L2 LINE L2 -324 2989 2344 242 288 6 110 chr11 32316480 32316599 -118466954 + L2 LINE L2 2824 2923 -391 * 1536 128 18 0 chr11 32316599 32316825 -118466728 + MER30 DNA MER1_type 1 230 0 242 288 6 110 chr11 32316825 32316868 -118466685 + L2 LINE L2 2923 2969 -345 743 316 130 5 chr11 32316896 32317266 -118466287 - L2 LINE L2 -977 2337 1922 240 167 0 0 chr11 32319268 32319316 -118464237 + L1MA9 LINE L1 6227 6274 -38 239 277 96 32 chr11 32319941 32320035 -118463518 - L2 LINE L2 -4 3268 3169 23 33 0 0 chr11 32321017 32321047 -118462506 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr11 32321067 32321089 -118462464 + AT_rich Low_complexity Low_complexity 1 22 0 256 194 60 0 chr11 32321155 32321222 -118462331 + L1MD3 LINE L1 2869 2939 -3207 3099 248 38 13 chr11 32321260 32322293 -118461260 + L1MD3 LINE L1 2933 3991 -2155 1275 167 50 0 chr11 32322297 32322518 -118461035 - AluSx SINE Alu -18 294 63 219 69 0 0 chr11 32322518 32322547 -118461006 + (TA)n Simple_repeat Simple_repeat 2 30 0 216 93 113 7 chr11 32322598 32322749 -118460804 + (TA)n Simple_repeat Simple_repeat 2 168 0 33 0 0 0 chr11 32322752 32322785 -118460768 + AT_rich Low_complexity Low_complexity 1 33 0 6388 212 108 85 chr11 32322791 32324397 -118459156 + L1MD3 LINE L1 4018 5586 -2409 1168 197 12 113 chr11 32324397 32324803 -118458750 + MLT1A1 LTR MaLR 1 365 0 6388 212 108 85 chr11 32324803 32325319 -118458234 + L1MD3 LINE L1 5586 6089 -1906 183 80 0 0 chr11 32325319 32325344 -118458209 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 6388 212 108 85 chr11 32325344 32325793 -118457760 + L1MD3 LINE L1 6089 6526 -1469 249 33 0 0 chr11 32325793 32325823 -118457730 + (TG)n Simple_repeat Simple_repeat 2 31 0 6388 212 108 85 chr11 32325823 32326003 -118457550 + L1MD3 LINE L1 6526 6700 -1295 1799 171 10 3 chr11 32326003 32326295 -118457258 + AluJo SINE Alu 4 297 -15 6388 212 108 85 chr11 32326295 32326713 -118456840 + L1MD3 LINE L1 6700 7107 -888 550 213 82 8 chr11 32326713 32326835 -118456718 + MLT1F1 LTR MaLR 1 131 -436 6388 212 108 85 chr11 32326835 32327420 -118456133 + L1MD3 LINE L1 7107 7982 -13 249 388 61 7 chr11 32327557 32327704 -118455849 + MIR3 SINE MIR 29 183 -25 396 127 38 13 chr11 32328808 32328887 -118454666 - L1MC4 LINE L1 -2 8040 7960 1293 190 25 44 chr11 32328922 32329238 -118454315 - L1MC4 LINE L1 -749 7293 6984 265 226 24 0 chr11 32331062 32331146 -118452407 + (TA)n Simple_repeat Simple_repeat 2 87 0 289 275 62 81 chr11 32331481 32331641 -118451912 - L2 LINE L2 -189 3083 2927 233 324 130 5 chr11 32331886 32332102 -118451451 - L2 LINE L2 -788 2526 2284 662 280 43 26 chr11 32332378 32332397 -118451156 + MIR SINE MIR 8 25 -237 2230 61 3 34 chr11 32332397 32332693 -118450860 + AluY SINE Alu 18 304 -7 662 280 43 26 chr11 32332693 32332923 -118450630 + MIR SINE MIR 25 262 0 234 0 0 0 chr11 32333941 32333967 -118449586 + (A)n Simple_repeat Simple_repeat 1 26 0 336 331 91 31 chr11 32334058 32334475 -118449078 + L2 LINE L2 1863 2304 -1010 810 256 40 18 chr11 32334482 32334705 -118448848 + MIR SINE MIR 29 256 -6 186 298 95 12 chr11 32335030 32335114 -118448439 + MIR3 SINE MIR 115 205 -3 222 309 81 40 chr11 32335498 32335647 -118447906 - L2 LINE L2 -2512 802 648 2225 107 3 0 chr11 32335651 32335951 -118447602 - AluSx SINE Alu -11 301 1 251 352 104 39 chr11 32335980 32336366 -118447187 - L2 LINE L2 -2807 507 97 21 36 0 0 chr11 32336826 32336854 -118446699 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 32337205 32337229 -118446324 + AT_rich Low_complexity Low_complexity 1 24 0 510 141 0 24 chr11 32337340 32337425 -118446128 - MLT1E LTR MaLR 0 654 572 315 0 0 0 chr11 32337427 32337462 -118446091 + (TG)n Simple_repeat Simple_repeat 2 36 0 1392 177 244 40 chr11 32337465 32337724 -118445829 - MLT2B1 LTR ERVL -71 449 244 2043 119 71 20 chr11 32337724 32338078 -118445475 - THE1C LTR MaLR -3 372 1 1392 177 244 40 chr11 32338078 32338191 -118445362 - MLT2B1 LTR ERVL -276 244 1 1513 257 86 38 chr11 32338196 32338674 -118444879 - MLT1E LTR MaLR -92 501 1 250 219 153 36 chr11 32338978 32339115 -118444438 + L1ME3A LINE L1 4796 4948 -1198 466 237 136 21 chr11 32339325 32339605 -118443948 + L1ME3A LINE L1 5189 5491 -679 343 331 57 6 chr11 32339622 32339779 -118443774 + L1ME3A LINE L1 5555 5719 -451 2378 117 117 5 chr11 32339861 32340246 -118443307 + MSTA LTR MaLR 1 428 0 1784 179 3 25 chr11 32340304 32340623 -118442930 + AluJb SINE Alu 1 312 0 374 262 68 29 chr11 32340633 32340839 -118442714 + L1ME3A LINE L1 5743 5956 -214 237 245 47 75 chr11 32341337 32341443 -118442110 + L2 LINE L2 3195 3297 -16 425 212 0 0 chr11 32341928 32342013 -118441540 + MLT1F LTR MaLR 1 85 -457 * 598 194 146 6 chr11 32342003 32342168 -118441385 + MLT1F1 LTR MaLR 6 193 -197 273 221 0 0 chr11 32342175 32342243 -118441310 + CT-rich Low_complexity Low_complexity 2 69 0 1362 205 95 15 chr11 32342252 32342589 -118440964 + MLT1F1 LTR MaLR 189 552 -15 2220 73 3 7 chr11 32342934 32343236 -118440317 - AluY SINE Alu -10 301 1 554 277 134 0 chr11 32344030 32344233 -118439320 + MIR SINE MIR 23 259 -3 185 239 11 114 chr11 32344597 32344685 -118438868 - L2 LINE L2 -289 2983 2905 701 186 34 45 chr11 32344689 32344866 -118438687 - MER5B DNA MER1_type -3 175 1 259 199 38 53 chr11 32345033 32345164 -118438389 - Charlie7 DNA MER1_type -70 2542 2414 1598 163 7 33 chr11 32345165 32345466 -118438087 + Tigger2a DNA MER2_type 2 294 -140 26 0 0 0 chr11 32345474 32345500 -118438053 + AT_rich Low_complexity Low_complexity 1 26 0 1644 157 7 43 chr11 32345576 32345881 -118437672 - AluJb SINE Alu -18 294 1 1073 248 41 52 chr11 32345881 32346340 -118437213 - Charlie7 DNA MER1_type -239 2373 1920 196 239 155 63 chr11 32346423 32346565 -118436988 - MIR SINE MIR -10 252 98 377 310 92 35 chr11 32347011 32347240 -118436313 + MIR SINE MIR 13 254 -8 599 314 137 26 chr11 32347599 32348170 -118435383 + L2 LINE L2 2679 3312 -1 33 0 0 0 chr11 32348573 32348606 -118434947 + AT_rich Low_complexity Low_complexity 1 33 0 661 153 9 0 chr11 32348608 32348719 -118434834 - FLAM_C SINE Alu -25 118 7 258 253 71 0 chr11 32348873 32348972 -118434581 + L1MC4a LINE L1 5260 5365 -2443 1296 294 74 28 chr11 32349003 32349716 -118433837 + L1MC4a LINE L1 5427 6172 -1636 1579 225 48 29 chr11 32350100 32350517 -118433036 - MLT1C LTR MaLR -41 464 3 407 19 19 0 chr11 32350632 32350684 -118432869 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr11 32351581 32351602 -118431951 + AT_rich Low_complexity Low_complexity 1 21 0 248 299 126 35 chr11 32351965 32352139 -118431414 + L1MC/D LINE L1 5579 5768 -2040 243 343 14 0 chr11 32352292 32352365 -118431188 - L2 LINE L2 0 3272 3199 684 283 78 22 chr11 32352518 32352928 -118430625 - L1ME4a LINE L1 0 6121 5689 215 213 51 47 chr11 32353748 32353835 -118429718 - MIR SINE MIR -63 199 45 22 0 0 0 chr11 32357516 32357538 -118426015 + AT_rich Low_complexity Low_complexity 1 22 0 250 129 43 43 chr11 32361255 32361325 -118422228 - L1MC4 LINE L1 -1337 6705 6636 617 200 12 19 chr11 32361386 32361546 -118422007 - L1MD3 LINE L1 -842 7153 6995 489 221 10 19 chr11 32361650 32361754 -118421799 + Tigger3(Golem) DNA MER2_type 2 104 -2925 * 4167 128 54 10 chr11 32361749 32361847 -118421706 + Tigger3(Golem) DNA MER2_type 2277 2369 -659 2167 109 3 13 chr11 32361847 32362149 -118421404 + AluSx SINE Alu 1 299 -13 4167 128 54 10 chr11 32362149 32362770 -118420783 + Tigger3(Golem) DNA MER2_type 2369 3028 0 3717 215 70 15 chr11 32363112 32364065 -118419488 - L1MC4a LINE L1 0 7808 6803 227 335 58 40 chr11 32364216 32364389 -118419164 - L3b LINE CR1 -235 1348 1173 376 176 149 0 chr11 32364604 32364678 -118418875 + MER2 DNA MER2_type 1 85 -260 671 293 86 9 chr11 32364837 32365069 -118418484 - MIR SINE MIR -11 251 2 2081 53 24 95 chr11 32365413 32365751 -118417802 - AluYb8 SINE Alu -4 314 1 793 61 2 0 chr11 32365922 32366028 -118417525 - L1PA5 LINE L1 -208 5946 5852 1384 44 39 0 chr11 32366028 32366206 -118417347 + L1PA5 LINE L1 5956 6142 -12 25 65 0 0 chr11 32367075 32367121 -118416432 + AT_rich Low_complexity Low_complexity 1 46 0 365 294 88 25 chr11 32367353 32367513 -118416040 + MIR SINE MIR 3 172 -90 265 264 0 0 chr11 32367791 32367844 -118415709 + MIR SINE MIR 205 257 -5 408 236 201 0 chr11 32368303 32368447 -118415106 - MER5A DNA MER1_type 0 189 17 304 227 92 126 chr11 32369067 32369305 -118414248 - L2 LINE L2 0 3313 3084 727 265 85 18 chr11 32369401 32369624 -118413929 - MIR SINE MIR -23 239 2 276 263 286 6 chr11 32369624 32369788 -118413765 - MIR SINE MIR -37 225 13 234 273 0 18 chr11 32370179 32370234 -118413319 + MIR SINE MIR 74 127 -81 399 337 25 6 chr11 32370701 32370864 -118412689 + MLT1K LTR MaLR 1 166 -422 1617 162 114 3 chr11 32370915 32371223 -118412330 - MER7A DNA MER2_type 0 346 7 207 148 0 37 chr11 32371770 32371824 -118411729 + (TTTTG)n Simple_repeat Simple_repeat 4 55 0 1953 227 54 62 chr11 32371949 32372184 -118411369 + MLT1E2 LTR MaLR 1 236 -390 2425 66 0 3 chr11 32372184 32372487 -118411066 + AluY SINE Alu 1 302 -9 1953 227 54 62 chr11 32372487 32372882 -118410671 + MLT1E2 LTR MaLR 236 626 0 195 129 0 0 chr11 32373365 32373396 -118410157 + (T)n Simple_repeat Simple_repeat 1 31 0 1865 210 147 12 chr11 32373808 32374304 -118409249 - L1MD2 LINE L1 0 6359 5797 433 319 147 5 chr11 32375969 32376160 -118407393 - MIR SINE MIR -12 250 33 2234 81 0 14 chr11 32376560 32376855 -118406698 + AluY SINE Alu 1 291 -20 220 360 0 12 chr11 32377354 32377440 -118406113 + L2 LINE L2 3229 3313 0 15054 194 33 11 chr11 32377485 32383992 -118399561 + L1PB1 LINE L1 6 6861 -6 1352 248 77 97 chr11 32384071 32384938 -118398615 + L1MEc LINE L1 1973 2761 -3454 1883 156 3 10 chr11 32384938 32385239 -118398314 + AluSx SINE Alu 1 299 -13 1352 248 77 97 chr11 32385239 32385582 -118397971 + L1MEc LINE L1 2761 3110 -3105 374 243 9 93 chr11 32385971 32386078 -118397475 + L2 LINE L2 3160 3257 -15 745 278 122 17 chr11 32386295 32386785 -118396768 - L2 LINE L2 -1 3312 2621 31 0 0 0 chr11 32390639 32390670 -118392883 + AT_rich Low_complexity Low_complexity 1 31 0 1857 63 0 0 chr11 32390787 32391024 -118392529 - L1PA3 LINE L1 -3 6152 5916 3978 34 0 0 chr11 32391024 32391499 -118392054 + L1P2 LINE L1 5327 5801 -354 768 173 0 0 chr11 32391585 32391712 -118391841 + FLAM_C SINE Alu 1 127 -16 21 36 0 0 chr11 32391712 32391740 -118391813 + AT_rich Low_complexity Low_complexity 1 28 0 189 292 14 14 chr11 32393416 32393488 -118390065 - MIR SINE MIR 0 262 191 508 223 19 11 chr11 32394272 32394391 -118389162 - MIR SINE MIR -63 145 71 2131 142 51 3 chr11 32394654 32395028 -118388525 + L1MC1 LINE L1 5936 6327 -6 2584 211 76 9 chr11 32395047 32396028 -118387525 + L1MB8 LINE L1 5102 6172 -6 706 116 0 39 chr11 32396206 32396335 -118387218 - L1MA4 LINE L1 0 6300 6177 2446 68 0 0 chr11 32396844 32397139 -118386414 - AluY SINE Alu -16 295 1 342 189 105 53 chr11 32398511 32398606 -118384947 + MIR SINE MIR 6 105 -157 767 294 141 16 chr11 32398966 32399469 -118384084 - L1ME4a LINE L1 0 6121 5556 335 203 14 0 chr11 32399469 32399543 -118384010 + MLT1F LTR MaLR 8 82 -460 1045 257 176 36 chr11 32399671 32400064 -118383489 + MLT1F LTR MaLR 95 542 0 430 308 63 32 chr11 32400068 32400491 -118383062 - L1ME4a LINE L1 -593 5528 5089 473 267 0 0 chr11 32400836 32400937 -118382616 - MIR SINE MIR -105 157 57 654 244 195 26 chr11 32401975 32402282 -118381271 - LTR41 LTR ERVL -6 767 409 1578 186 32 70 chr11 32402315 32402687 -118380866 + MLT1A1 LTR MaLR 1 358 -7 982 223 15 0 chr11 32402687 32402889 -118380664 + MLT1A1-int LTR MaLR 2 206 -1529 4848 151 38 13 chr11 32402900 32403776 -118379777 - L1PB4 LINE L1 -5 6151 5254 301 188 0 0 chr11 32403787 32403835 -118379718 - Alu SINE Alu -253 48 1 2250 85 3 26 chr11 32403841 32404147 -118379406 - AluSp SINE Alu -14 299 1 991 169 18 37 chr11 32404150 32404324 -118379229 - L1M2 LINE L1 -4774 2075 1899 198 0 0 0 chr11 32404324 32404346 -118379207 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 1718 180 18 0 chr11 32404349 32404632 -118378921 - AluJo SINE Alu -24 288 1 991 169 18 37 chr11 32404632 32404726 -118378827 - L1M2 LINE L1 -4952 1897 1808 * 1022 285 64 18 chr11 32404716 32405106 -118378447 - L1PA15-16 LINE L1 -6436 413 6 547 194 37 0 chr11 32405100 32405208 -118378345 + MLT1A1-int LTR MaLR 187 298 -1437 * 315 238 0 0 chr11 32405216 32405279 -118378274 + MER58A DNA MER1_type 46 108 0 587 257 56 64 chr11 32405313 32405562 -118377991 - L1ME LINE L1 -359 5811 5565 186 349 23 68 chr11 32406738 32406870 -118376683 - MER5A DNA MER1_type -43 146 21 2969 237 79 18 chr11 32406984 32407717 -118375836 + MER21B LTR ERV1 26 803 -60 437 325 19 13 chr11 32408201 32408358 -118375195 - MIR3 SINE MIR -13 195 38 241 269 221 19 chr11 32409049 32409153 -118374400 + L2 LINE L2 3147 3271 -1 2118 92 7 7 chr11 32409316 32409628 -118373925 + AluSq SINE Alu 1 312 0 331 311 43 38 chr11 32410179 32410301 -118373252 + MIR SINE MIR 27 148 -78 199 220 0 60 chr11 32410389 32410439 -118373114 - MIR3 SINE MIR -42 166 120 307 221 21 14 chr11 32410556 32410701 -118372852 + (TA)n Simple_repeat Simple_repeat 2 147 0 692 242 63 102 chr11 32411481 32411766 -118371787 - Charlie8 DNA MER1_type -2142 275 2 21 36 0 0 chr11 32412335 32412363 -118371190 + AT_rich Low_complexity Low_complexity 1 28 0 2450 214 65 63 chr11 32413159 32413687 -118369866 - L1ME1 LINE L1 0 6403 5878 261 0 0 0 chr11 32413687 32413716 -118369837 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1580 148 0 82 chr11 32413717 32414021 -118369532 - AluJb SINE Alu -33 279 1 2450 214 65 63 chr11 32414021 32414706 -118368847 - L1ME1 LINE L1 -524 5879 5052 4857 251 67 23 chr11 32414710 32416713 -118366840 - L1ME1 LINE L1 -2313 3902 1754 1449 186 73 11 chr11 32416713 32416988 -118366565 - AluJb SINE Alu -20 292 1 4857 251 67 23 chr11 32416988 32417935 -118365618 - L1ME1 LINE L1 -4461 1754 850 795 252 35 31 chr11 32418309 32418535 -118365018 + MIR SINE MIR 1 227 -35 499 312 35 6 chr11 32420399 32420569 -118362984 - MIR SINE MIR -6 256 82 430 272 61 14 chr11 32420689 32420836 -118362717 - MIR3 SINE MIR -2 206 53 278 229 160 53 chr11 32420941 32421072 -118362481 + MIR SINE MIR 118 262 0 224 239 0 56 chr11 32422314 32422385 -118361168 - L2 LINE L2 -1 3312 3246 5532 38 12 1 chr11 32422783 32423461 -118360092 - L1PA7 LINE L1 -1 6153 5469 210 71 0 0 chr11 32424892 32424920 -118358633 + (TG)n Simple_repeat Simple_repeat 1 28 0 340 339 73 12 chr11 32427310 32427475 -118356078 + L2 LINE L2 2686 2860 -454 2341 95 0 0 chr11 32427699 32428005 -118355548 - AluSc SINE Alu -3 306 1 272 329 86 21 chr11 32428269 32428409 -118355144 - L2 LINE L2 -4 3309 3161 26 82 0 0 chr11 32429714 32429775 -118353778 + AT_rich Low_complexity Low_complexity 1 61 0 2164 121 0 0 chr11 32429785 32430083 -118353470 + AluSx SINE Alu 3 300 -12 717 170 216 0 chr11 32430676 32430847 -118352706 - MER3 DNA MER1_type 0 209 2 731 261 23 68 chr11 32430849 32431113 -118352440 + MIR SINE MIR 11 262 0 1279 251 89 18 chr11 32432348 32432909 -118350644 + L1MC4 LINE L1 7442 8042 0 1473 134 5 5 chr11 32437108 32437324 -118346229 - AluJb SINE Alu -13 299 84 231 125 0 0 chr11 32438379 32438419 -118345134 + (CATA)n Simple_repeat Simple_repeat 2 41 0 270 236 0 0 chr11 32438454 32438509 -118345044 - Tigger6 DNA MER2_type -1542 55 1 22 35 0 0 chr11 32439265 32439294 -118344259 + AT_rich Low_complexity Low_complexity 1 29 0 520 196 49 136 chr11 32440822 32441006 -118342547 - L2 LINE L2 0 3313 3146 1269 191 127 78 chr11 32441009 32441281 -118342272 - MER69 DNA AcHobo -3 2523 2215 3253 53 0 0 chr11 32441281 32441693 -118341860 - L1PA5 LINE L1 -3 6151 5740 1269 191 127 78 chr11 32441693 32441908 -118341645 - MER69 DNA AcHobo -311 2215 2012 1410 267 201 8 chr11 32441909 32442381 -118341172 - MER69 DNA AcHobo -659 567 5 720 252 198 49 chr11 32442385 32442925 -118340628 - L2 LINE L2 -162 3151 2540 654 294 98 13 chr11 32443644 32444039 -118339514 - LTR16A LTR ERVL 0 491 1 184 221 147 15 chr11 32444108 32444176 -118339377 - MIR SINE MIR -121 141 65 23 33 0 0 chr11 32444656 32444686 -118338867 + AT_rich Low_complexity Low_complexity 1 30 0 449 250 83 0 chr11 32448476 32448608 -118334945 + MER69 DNA AcHobo 2383 2525 -1 288 260 14 27 chr11 32450354 32450427 -118333126 - MER5B DNA MER1_type -3 175 104 1908 225 94 60 chr11 32450431 32451487 -118332066 + MER63C DNA MER1_type 5 925 -5 235 271 59 59 chr11 32451489 32451574 -118331979 + MER5B DNA MER1_type 78 162 -16 316 192 288 0 chr11 32451786 32451859 -118331694 + MER81 DNA DNA 2 95 -19 345 148 0 74 chr11 32451866 32451947 -118331606 + MER3 DNA MER1_type 135 209 0 1983 107 0 0 chr11 32452046 32452335 -118331218 - L1P LINE L1 -2032 4114 3826 6204 97 22 3 chr11 32452335 32453924 -118329629 + L1PA10 LINE L1 4555 6164 -4 26 74 0 0 chr11 32456037 32456091 -118327462 + AT_rich Low_complexity Low_complexity 1 54 0 24 0 0 0 chr11 32456221 32456245 -118327308 + AT_rich Low_complexity Low_complexity 1 24 0 235 313 43 0 chr11 32456611 32456698 -118326855 + MIR SINE MIR 23 116 -107 1063 216 0 43 chr11 32457385 32457617 -118325936 - MER58A DNA MER1_type -1 223 2 391 386 38 0 chr11 32457992 32458150 -118325403 - MIR3 SINE MIR -39 169 6 907 244 30 60 chr11 32458320 32458619 -118324934 + MLT1I LTR MaLR 101 390 -19 303 216 0 105 chr11 32458845 32458889 -118324664 + A-rich Low_complexity Low_complexity 2 49 -89 2854 13 0 0 chr11 32458889 32459202 -118324351 + AluYb8 SINE Alu 1 313 -5 303 216 0 105 chr11 32459202 32459310 -118324243 + A-rich Low_complexity Low_complexity 49 138 0 2270 110 3 0 chr11 32461682 32461991 -118321562 - AluSx SINE Alu -2 310 1 699 307 53 14 chr11 32462249 32462649 -118320904 + LTR16B LTR ERVL 8 464 0 1778 189 0 3 chr11 32462701 32462997 -118320556 + AluJo SINE Alu 1 295 -17 22 0 0 0 chr11 32462997 32463019 -118320534 + AT_rich Low_complexity Low_complexity 1 22 0 2334 65 17 0 chr11 32465344 32465636 -118317917 - AluSg SINE Alu -13 297 1 563 154 8 86 chr11 32466961 32467078 -118316475 - MER58A DNA MER1_type -1 223 116 200 184 20 0 chr11 32467088 32467137 -118316416 + (TA)n Simple_repeat Simple_repeat 2 51 0 350 258 0 72 chr11 32467175 32467272 -118316281 - MER58A DNA MER1_type -17 90 1 294 29 0 0 chr11 32470463 32470498 -118313055 + (TG)n Simple_repeat Simple_repeat 2 36 0 26 74 0 0 chr11 32470645 32470699 -118312854 + AT_rich Low_complexity Low_complexity 1 54 0 33 43 0 0 chr11 32471265 32471312 -118312241 + AT_rich Low_complexity Low_complexity 1 47 0 207 294 0 0 chr11 32471787 32471838 -118311715 + MIR SINE MIR 48 98 -164 1907 115 19 39 chr11 32472113 32472425 -118311128 - AluSx SINE Alu -6 306 1 252 300 36 61 chr11 32472425 32472702 -118310851 - L1ME LINE L1 -502 5619 5350 26 0 0 0 chr11 32472980 32473006 -118310547 + AT_rich Low_complexity Low_complexity 1 26 0 383 196 31 21 chr11 32473114 32473211 -118310342 - MER46C DNA MER2_type -2 336 239 2064 112 3 45 chr11 32474062 32474374 -118309179 - AluSx SINE Alu -13 299 1 225 132 0 0 chr11 32476199 32476237 -118307316 + (A)n Simple_repeat Simple_repeat 1 38 0 1308 133 177 20 chr11 32476253 32476526 -118307027 + AluSx SINE Alu 1 312 0 229 30 0 0 chr11 32476671 32476704 -118306849 + Alu SINE Alu 260 292 -7 340 235 69 93 chr11 32476713 32476738 -118306815 + L1ME4a LINE L1 5611 5635 -486 4824 91 39 13 chr11 32476738 32477232 -118306321 - L1PB2 LINE L1 0 6151 5631 5149 78 1 27 chr11 32477232 32477938 -118305615 + LTR12 LTR ERV1 1 688 0 4824 91 39 13 chr11 32477938 32478155 -118305398 - L1ME4a LINE L1 -520 5631 5421 340 235 69 93 chr11 32478155 32478394 -118305159 + L1ME4a LINE L1 5635 5883 -238 228 35 0 0 chr11 32478561 32478590 -118304963 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 307 295 0 21 chr11 32479107 32479202 -118304351 - MIR SINE MIR -137 125 33 1250 129 117 0 chr11 32479834 32480082 -118303471 + L1MA7 LINE L1 6015 6291 0 543 255 34 20 chr11 32480252 32480401 -118303152 - MLT1J1 LTR MaLR -295 151 1 227 283 103 21 chr11 32481106 32481251 -118302302 + L2 LINE L2 2701 2857 -457 2133 105 0 0 chr11 32481489 32481774 -118301779 + AluSx SINE Alu 1 285 -27 297 0 0 0 chr11 32481774 32481807 -118301746 + (CA)n Simple_repeat Simple_repeat 2 34 0 213 65 0 0 chr11 32481848 32481879 -118301674 + (CA)n Simple_repeat Simple_repeat 1 31 0 258 298 78 120 chr11 32481879 32481914 -118301639 + L2 LINE L2 2928 2963 -309 2156 128 128 10 chr11 32481914 32482297 -118301256 + MSTA LTR MaLR 1 428 0 258 298 78 120 chr11 32482297 32482570 -118300983 + L2 LINE L2 2963 3223 -49 269 133 22 0 chr11 32483298 32483343 -118300210 - L2 LINE L2 -19 3294 3249 414 338 125 40 chr11 32483524 32483820 -118299733 - L2 LINE L2 -6 3266 2946 203 271 114 14 chr11 32483859 32483929 -118299624 - MIR SINE MIR -75 187 111 1589 191 72 6 chr11 32484032 32484394 -118299159 - MER58D DNA MER1_type 0 386 1 1103 178 91 0 chr11 32484417 32484670 -118298883 - MER33 DNA MER1_type 0 324 49 312 295 36 18 chr11 32484737 32484849 -118298704 - Charlie8 DNA MER1_type -2160 257 144 1306 163 130 43 chr11 32485086 32485362 -118298191 + AluJo SINE Alu 1 300 -12 375 181 0 0 chr11 32485362 32485434 -118298119 + (TA)n Simple_repeat Simple_repeat 1 72 0 1938 170 24 19 chr11 32485435 32485858 -118297695 + L1MB3 LINE L1 5757 6181 -2 1785 141 17 47 chr11 32485890 32486079 -118297474 - L1MA8 LINE L1 -1 6290 6097 189 74 0 0 chr11 32486079 32486106 -118297447 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2423 50 0 30 chr11 32486106 32486405 -118297148 - AluY SINE Alu -21 290 1 1785 141 17 47 chr11 32486405 32486575 -118296978 - L1MA8 LINE L1 -192 6099 5941 231 198 27 63 chr11 32486936 32487047 -118296506 + A-rich Low_complexity Low_complexity 5 111 0 267 316 13 0 chr11 32491100 32491179 -118292374 - MER119 DNA MER1_type -499 84 5 552 184 87 0 chr11 32492166 32492269 -118291284 + Tigger3(Golem) DNA MER2_type 2 113 -2916 * 4690 105 57 20 chr11 32492266 32493069 -118290484 + Tigger3(Golem) DNA MER2_type 2069 2901 -128 573 244 18 83 chr11 32493121 32493321 -118290232 - L1MC/D LINE L1 -743 5403 5389 1701 155 72 11 chr11 32493321 32493599 -118289954 - AluJo SINE Alu -17 295 1 573 244 18 83 chr11 32493599 32493754 -118289799 - L1MC/D LINE L1 -757 5389 5226 916 204 14 24 chr11 32494390 32494601 -118288952 + L1MC3 LINE L1 6100 6308 -1477 222 235 20 0 chr11 32494624 32494675 -118288878 + GA-rich Low_complexity Low_complexity 2 53 0 456 275 8 15 chr11 32495742 32495873 -118287680 - MER5B DNA MER1_type -3 175 46 205 381 17 17 chr11 32496385 32496503 -118287050 + L2 LINE L2 3160 3277 -36 593 291 41 57 chr11 32496599 32496843 -118286710 + MIR SINE MIR 19 258 -4 22 0 0 0 chr11 32496845 32496867 -118286686 + AT_rich Low_complexity Low_complexity 1 22 0 2867 95 10 0 chr11 32496931 32497356 -118286197 + L1PA8A LINE L1 5701 6166 -6 349 250 234 0 chr11 32497616 32497740 -118285813 - L2 LINE L2 0 3313 3161 204 338 15 0 chr11 32498130 32498198 -118285355 - L2 LINE L2 -666 2648 2580 2230 88 7 0 chr11 32498800 32499116 -118284437 - AluSp SINE Alu 0 318 1 1006 260 5 0 chr11 32499204 32499427 -118284126 - MER58A DNA MER1_type 0 224 1 478 259 91 28 chr11 32499433 32499576 -118283977 - MLT1I LTR MaLR -66 343 192 29 0 0 0 chr11 32500143 32500172 -118283381 + AT_rich Low_complexity Low_complexity 1 29 0 2324 171 26 9 chr11 32500464 32500891 -118282662 - Tigger2a DNA MER2_type 0 434 1 202 254 16 16 chr11 32500970 32501033 -118282520 - MIR3 SINE MIR -5 203 141 24 53 0 0 chr11 32501135 32501173 -118282380 + AT_rich Low_complexity Low_complexity 1 38 0 300 70 0 0 chr11 32501717 32501760 -118281793 + (CA)n Simple_repeat Simple_repeat 1 43 0 7080 179 112 23 chr11 32501883 32503306 -118280247 + MER52A LTR ERV1 1 1550 -205 5255 239 22 25 chr11 32503702 32506137 -118277416 + L1MA6 LINE L1 2055 4173 -3392 3432 165 34 30 chr11 32506138 32506682 -118276871 + L1MA6 LINE L1 6168 6708 -1011 2214 118 0 0 chr11 32506682 32506979 -118276574 - AluSg SINE Alu -13 297 1 3432 165 34 30 chr11 32506979 32507651 -118275902 + L1MA6 LINE L1 6708 7403 -316 2640 146 29 12 chr11 32507642 32508122 -118275431 + L1M2 LINE L1 4924 5411 -2154 * 1283 189 11 23 chr11 32508123 32508388 -118275165 + L1MA6 LINE L1 7412 7673 -46 * 12233 145 59 118 chr11 32508387 32510582 -118272971 + L1PA7 LINE L1 2 2327 -3819 212 0 36 0 chr11 32510582 32510610 -118272943 + (CAA)n Simple_repeat Simple_repeat 2 30 0 12233 145 59 118 chr11 32510610 32511488 -118272065 + L1PA7 LINE L1 2327 2890 -3256 8273 76 16 0 chr11 32511488 32513408 -118270145 + L1PA7 LINE L1 4205 6152 -2 12233 145 59 118 chr11 32513408 32513439 -118270114 + L1PA7 LINE L1 2890 2921 -3225 768 297 84 16 chr11 32513958 32514388 -118269165 + L2 LINE L2 2593 3060 -253 437 180 169 0 chr11 32515128 32515217 -118268336 + L2 LINE L2 3208 3311 -2 318 297 10 40 chr11 32515289 32515390 -118268163 + L2 LINE L2 3175 3272 0 499 242 83 0 chr11 32515988 32516108 -118267445 - FLAM_A SINE Alu -2 131 2 247 279 115 49 chr11 32516111 32516233 -118267320 - MIR SINE MIR -64 198 69 348 216 93 103 chr11 32516337 32516531 -118267022 - L2 LINE L2 0 3313 3122 1817 214 0 14 chr11 32516790 32517160 -118266393 + MLT1A1 LTR MaLR 1 365 0 2221 185 66 27 chr11 32517447 32517933 -118265620 - MLT1D LTR MaLR 0 505 1 474 288 73 6 chr11 32518170 32518347 -118265206 - MIR SINE MIR -26 236 48 534 298 174 20 chr11 32518463 32518859 -118264694 - L1MC/D LINE L1 -2038 5770 5314 1674 129 32 110 chr11 32518897 32519269 -118264284 + MER2 DNA MER2_type 1 343 -1 351 328 140 9 chr11 32519978 32520207 -118263346 + L2 LINE L2 2391 2649 -665 243 352 52 48 chr11 32520351 32520581 -118262972 + L2 LINE L2 2823 3053 -219 2741 193 16 39 chr11 32520719 32521284 -118262269 + MLT2B3 LTR ERVL 3 554 0 1196 184 5 5 chr11 32521309 32521516 -118262037 + MER46A DNA MER2_type 1 207 -29 1026 249 140 10 chr11 32522362 32522856 -118260697 - L1ME4a LINE L1 -1 6120 5563 355 288 125 27 chr11 32523196 32523380 -118260173 + MIR3 SINE MIR 6 207 -1 419 256 130 70 chr11 32523540 32523841 -118259712 + L2 LINE L2 2995 3313 0 2760 226 69 30 chr11 32524230 32524988 -118258565 - MER21B LTR ERV1 -58 805 19 451 162 27 0 chr11 32525014 32525088 -118258465 - MER21B LTR ERV1 -773 90 15 358 285 151 12 chr11 32525445 32525617 -118257936 - MIR SINE MIR -65 197 2 325 306 116 7 chr11 32525832 32525979 -118257574 + MIR SINE MIR 50 212 -50 22 35 0 0 chr11 32526389 32526418 -118257135 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr11 32528619 32528645 -118254908 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr11 32528807 32528845 -118254708 + AT_rich Low_complexity Low_complexity 1 38 0 263 333 137 0 chr11 32529044 32529161 -118254392 + L2 LINE L2 3181 3313 0 41 48 0 0 chr11 32529246 32529308 -118254245 + AT_rich Low_complexity Low_complexity 1 62 0 1738 176 0 26 chr11 32530270 32530577 -118252976 + AluJb SINE Alu 2 300 -12 281 273 68 8 chr11 32531786 32531918 -118251635 + L1M4 LINE L1 4080 4219 -1927 596 225 70 7 chr11 32532031 32532173 -118251380 + MER63A DNA MER1_type 60 210 0 302 246 36 22 chr11 32532178 32532316 -118251237 + L1M4 LINE L1 2956 3095 -3051 2038 119 3 0 chr11 32532538 32532840 -118250713 + AluSx SINE Alu 10 312 0 848 230 125 10 chr11 32533149 32533349 -118250204 + MER58A DNA MER1_type 2 224 0 900 151 38 16 chr11 32533714 32533899 -118249654 + MER53 DNA DNA 1 189 0 267 106 0 0 chr11 32533924 32533971 -118249582 + L1MA3 LINE L1 6259 6305 0 516 261 195 8 chr11 32534106 32534347 -118249206 + L1MC4 LINE L1 7206 7491 -551 2028 112 0 10 chr11 32534398 32534703 -118248850 - AluSg SINE Alu -8 302 1 652 226 107 29 chr11 32534709 32534952 -118248601 + Charlie4 DNA MER1_type 1 262 -1699 679 229 35 6 chr11 32535082 32535252 -118248301 + MIR SINE MIR 88 262 0 24 32 0 0 chr11 32535274 32535305 -118248248 + AT_rich Low_complexity Low_complexity 1 31 0 2277 291 181 19 chr11 32535455 32537056 -118246497 + L2 LINE L2 1414 3295 -18 2389 97 0 0 chr11 32538420 32538730 -118244823 + AluSg SINE Alu 1 310 0 331 229 236 14 chr11 32538755 32538899 -118244654 - MIR SINE MIR -31 231 56 2450 64 0 3 chr11 32539790 32540088 -118243465 + AluY SINE Alu 1 297 -14 21 57 0 0 chr11 32540141 32540176 -118243377 + AT_rich Low_complexity Low_complexity 1 35 0 328 294 112 42 chr11 32540452 32540896 -118242657 + L1MC/D LINE L1 5270 5758 -363 558 0 0 0 chr11 32541090 32541152 -118242401 + (TC)n Simple_repeat Simple_repeat 2 63 0 2279 99 0 10 chr11 32541426 32541730 -118241823 + AluSg SINE Alu 1 301 -9 207 286 0 0 chr11 32541887 32541936 -118241617 + (TATATG)n Simple_repeat Simple_repeat 1 49 0 35 0 0 0 chr11 32542919 32542954 -118240599 + AT_rich Low_complexity Low_complexity 1 35 0 742 160 0 8 chr11 32543143 32543274 -118240279 + FLAM_A SINE Alu 6 135 -7 2256 92 3 3 chr11 32543502 32543795 -118239758 + AluSc SINE Alu 1 293 -16 194 254 85 0 chr11 32544843 32544902 -118238651 + L2 LINE L2 2667 2730 -584 198 118 0 0 chr11 32547081 32547115 -118236438 + (CA)n Simple_repeat Simple_repeat 1 34 0 23 68 0 0 chr11 32547161 32547205 -118236348 + AT_rich Low_complexity Low_complexity 1 44 0 638 258 44 81 chr11 32547724 32547995 -118235558 - MIR SINE MIR 0 262 2 487 237 182 36 chr11 32548341 32548594 -118234959 + MARNA DNA Mariner 288 577 -9 1401 236 25 19 chr11 32548716 32549081 -118234472 - MLT1A2 LTR MaLR -4 370 4 4003 198 179 27 chr11 32549104 32550043 -118233510 - MLT1A2-int LTR MaLR -24 1347 156 2074 136 3 3 chr11 32550043 32550352 -118233201 - AluSx SINE Alu -3 309 1 4003 198 179 27 chr11 32550352 32550532 -118233021 - MLT1A2-int LTR MaLR -1215 156 5 1270 251 29 42 chr11 32550536 32550915 -118232638 - MLT1A2 LTR MaLR 0 374 1 237 108 0 0 chr11 32551309 32551346 -118232207 + (TATG)n Simple_repeat Simple_repeat 1 37 0 658 275 85 64 chr11 32551347 32551783 -118231770 + L1ME3A LINE L1 5504 5948 -222 280 250 14 0 chr11 32551783 32551855 -118231698 + (TA)n Simple_repeat Simple_repeat 2 74 0 2568 75 8 22 chr11 32551855 32552215 -118231338 + THE1A LTR MaLR 1 355 0 219 114 0 0 chr11 32552217 32552252 -118231301 + (TA)n Simple_repeat Simple_repeat 1 35 0 5944 97 6 18 chr11 32552252 32553515 -118230038 + L1PB2 LINE L1 4892 6148 -3 282 196 33 0 chr11 32553528 32553620 -118229933 + (TA)n Simple_repeat Simple_repeat 1 95 0 207 191 0 0 chr11 32553681 32553744 -118229809 + (TA)n Simple_repeat Simple_repeat 2 64 0 2955 263 115 25 chr11 32554229 32555124 -118228429 + L1MEc LINE L1 1137 1950 -4265 2108 176 73 2 chr11 32555124 32555522 -118228031 - MSTB LTR MaLR 0 426 1 2955 263 115 25 chr11 32555522 32556854 -118226699 + L1MEc LINE L1 1950 3538 -2677 1034 124 118 11 chr11 32556856 32557042 -118226511 + L1PA16 LINE L1 5952 6157 -9 1228 253 44 52 chr11 32557061 32557543 -118226010 + L1MEc LINE L1 3524 4001 -2214 2721 183 40 5 chr11 32557663 32558232 -118225321 + L1 LINE L1 3791 4379 -1767 411 170 21 11 chr11 32558232 32558320 -118225233 + L1MB2 LINE L1 6075 6169 -2 192 125 0 0 chr11 32558344 32558376 -118225177 + (A)n Simple_repeat Simple_repeat 1 32 0 881 190 37 33 chr11 32558698 32558940 -118224613 - Charlie2 DNA MER1_type -45 2817 2575 1650 151 4 14 chr11 32558946 32559224 -118224329 - AluJo SINE Alu -9 303 29 999 236 64 22 chr11 32559267 32559640 -118223913 - Charlie2 DNA MER1_type -2427 435 13 190 323 71 24 chr11 32560634 32560761 -118222792 + MIR3 SINE MIR 43 175 -33 * 450 229 49 69 chr11 32560746 32560805 -118222748 - MIR SINE MIR -1 261 202 2137 109 3 0 chr11 32560805 32561090 -118222463 + AluSx SINE Alu 11 296 -16 450 229 49 69 chr11 32561090 32561174 -118222379 - MIR SINE MIR -60 202 121 237 320 67 0 chr11 32561145 32561220 -118222333 + MIR3 SINE MIR 124 203 -5 * 192 293 66 78 chr11 32561276 32561443 -118222110 + L2 LINE L2 3127 3291 -22 493 120 0 0 chr11 32561870 32561945 -118221608 + Charlie5 DNA MER1_type 33 107 -2505 25 51 0 0 chr11 32563564 32563603 -118219950 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr11 32563752 32563783 -118219770 + AT_rich Low_complexity Low_complexity 1 31 0 30 0 0 0 chr11 32567755 32567785 -118215768 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr11 32569388 32569424 -118214129 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chr11 32571107 32571156 -118212397 + AT_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chr11 32572117 32572140 -118211413 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr11 32572195 32572232 -118211321 + AT_rich Low_complexity Low_complexity 1 37 0 272 318 32 40 chr11 32573045 32573171 -118210382 + L2 LINE L2 2968 3092 -180 187 254 0 90 chr11 32576448 32576515 -118207038 + MIR SINE MIR 101 161 -101 340 281 91 16 chr11 32577815 32577936 -118205617 + L3 LINE CR1 214 343 -1234 291 54 0 0 chr11 32578374 32578411 -118205142 + (CA)n Simple_repeat Simple_repeat 2 38 0 186 43 0 0 chr11 32578411 32578434 -118205119 + (TA)n Simple_repeat Simple_repeat 1 23 0 2326 92 0 0 chr11 32578747 32579041 -118204512 - AluSc SINE Alu -15 294 1 302 282 73 36 chr11 32579069 32579179 -118204374 - L2 LINE L2 -32 3281 3168 986 251 119 25 chr11 32579257 32579584 -118203969 + MLT2D LTR ERVL 1 358 -56 264 77 0 0 chr11 32579586 32579625 -118203928 + (GA)n Simple_repeat Simple_repeat 2 40 0 304 322 87 33 chr11 32579709 32579951 -118203602 - L2 LINE L2 -214 3058 2804 1239 318 223 13 chr11 32580120 32580942 -118202611 + L3 LINE CR1 570 1563 -14 22 35 0 0 chr11 32581263 32581292 -118202261 + AT_rich Low_complexity Low_complexity 1 29 0 697 67 0 0 chr11 32581345 32581435 -118202118 - AluY SINE Alu -12 299 210 640 225 51 0 chr11 32581639 32581777 -118201776 + MLT1F1 LTR MaLR 422 566 -1 244 225 70 14 chr11 32581984 32582055 -118201498 + MLT1I LTR MaLR 286 360 -49 543 220 240 15 chr11 32582562 32582762 -118200791 - MLT1H LTR MaLR -19 530 286 4313 182 25 24 chr11 32582776 32583465 -118200088 - L1MB5 LINE L1 -8 6166 5480 198 71 0 0 chr11 32583465 32583493 -118200060 + (TG)n Simple_repeat Simple_repeat 1 28 0 4313 182 25 24 chr11 32583493 32584258 -118199295 - L1MB5 LINE L1 -694 5480 4714 471 257 37 86 chr11 32584275 32584462 -118199091 - MER21B LTR ERV1 -196 667 490 21 0 0 0 chr11 32584736 32584757 -118198796 + AT_rich Low_complexity Low_complexity 1 21 0 408 40 0 0 chr11 32585685 32585735 -118197818 + (CA)n Simple_repeat Simple_repeat 2 51 0 2175 96 0 7 chr11 32587064 32587357 -118196196 + AluSq SINE Alu 5 295 -18 882 224 98 5 chr11 32587423 32587628 -118195925 - MIR SINE MIR -24 238 15 1302 211 88 6 chr11 32589409 32589727 -118193826 - MER2 DNA MER2_type -1 344 1 1702 156 20 23 chr11 32589975 32590276 -118193277 + AluJo SINE Alu 1 300 -12 289 320 80 0 chr11 32592101 32592226 -118191327 - L2 LINE L2 -1 3271 3137 189 147 0 0 chr11 32592422 32592456 -118191097 + (GA)n Simple_repeat Simple_repeat 1 34 0 807 263 120 0 chr11 32592460 32592669 -118190884 + MIR SINE MIR 8 241 -21 621 215 40 118 chr11 32592778 32593006 -118190547 - MER63A DNA MER1_type 0 210 1 21 57 0 0 chr11 32593225 32593260 -118190293 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr11 32593601 32593624 -118189929 + AT_rich Low_complexity Low_complexity 1 23 0 340 275 130 25 chr11 32593664 32593940 -118189613 + L1ME4a LINE L1 5799 6103 -18 2214 101 0 3 chr11 32595185 32595483 -118188070 - AluSp SINE Alu -16 297 1 27 0 0 0 chr11 32596304 32596331 -118187222 + AT_rich Low_complexity Low_complexity 1 27 0 3793 91 18 7 chr11 32596360 32596911 -118186642 - L1PA16 LINE L1 -156 6010 5454 1693 179 3 13 chr11 32597376 32597677 -118185876 - AluJb SINE Alu -14 298 1 1365 245 28 3 chr11 32598112 32598435 -118185118 + MER58B DNA MER1_type 2 332 -9 361 326 144 33 chr11 32598441 32598656 -118184897 + L2 LINE L2 189 427 -2887 1128 343 82 21 chr11 32598843 32599644 -118183909 + L2 LINE L2 1104 1953 -1361 2050 117 46 57 chr11 32599654 32599872 -118183681 - THE1B LTR MaLR 0 364 150 2164 108 0 3 chr11 32599872 32600168 -118183385 + AluSg SINE Alu 1 295 -15 2050 117 46 57 chr11 32600168 32600317 -118183236 - THE1B LTR MaLR -214 150 1 9280 99 138 4 chr11 32600332 32601721 -118181832 - THE1B-int LTR MaLR -5 1575 1 2107 111 63 23 chr11 32601721 32602071 -118181482 - THE1B LTR MaLR 0 364 1 350 239 150 0 chr11 32602281 32602394 -118181159 - L2 LINE L2 0 3313 3184 2107 136 0 0 chr11 32602706 32603001 -118180552 - AluSg SINE Alu -12 298 4 376 237 140 0 chr11 32603024 32603138 -118180415 + L2 LINE L2 3184 3313 0 530 221 73 135 chr11 32603366 32603513 -118180040 + MLT1L LTR MaLR 1 123 -492 2009 91 4 0 chr11 32603513 32603776 -118179777 - AluSp SINE Alu -16 297 34 530 221 73 135 chr11 32603776 32603917 -118179636 + MLT1L LTR MaLR 123 271 -344 271 247 196 0 chr11 32604062 32604159 -118179394 + MLT1L LTR MaLR 498 613 -2 230 282 43 37 chr11 32604967 32604985 -118178568 - L1MA10 LINE L1 -2 6332 6315 2685 227 82 60 chr11 32604985 32606318 -118177235 - L1ME2 LINE L1 -10 6223 4842 3037 138 0 8 chr11 32606318 32606818 -118176735 + L1MA8 LINE L1 5793 6288 -3 2685 227 82 60 chr11 32606818 32607245 -118176308 - L1ME2 LINE L1 -1391 4842 4426 3552 60 15 6 chr11 32607433 32607900 -118175653 + L1PA7 LINE L1 5678 6148 -6 2379 263 82 18 chr11 32609058 32609581 -118173972 - L1ME2 LINE L1 -1778 4437 3830 1969 134 45 31 chr11 32609581 32609940 -118173613 + THE1B LTR MaLR 1 364 0 2379 263 82 18 chr11 32609940 32610313 -118173240 - L1ME2 LINE L1 -2385 3830 3483 312 119 60 60 chr11 32610313 32610380 -118173173 - MLT2A2 LTR ERVL 0 453 387 27 49 0 0 chr11 32610419 32610460 -118173093 + AT_rich Low_complexity Low_complexity 1 41 0 424 294 7 0 chr11 32610531 32610667 -118172886 - L1ME2 LINE L1 -3320 2895 2759 1708 261 68 58 chr11 32610669 32611598 -118171955 - L1ME2 LINE L1 -4619 1777 840 296 368 75 10 chr11 32611756 32611957 -118171596 - L1ME2 LINE L1 -5931 465 252 389 335 24 19 chr11 32611984 32612190 -118171363 - L1ME2 LINE L1 -6133 263 57 194 325 193 9 chr11 32612308 32612422 -118171131 + MIR3 SINE MIR 40 174 -34 35 63 0 0 chr11 32612542 32612605 -118170948 + AT_rich Low_complexity Low_complexity 1 63 0 2218 113 0 0 chr11 32612651 32612944 -118170609 - AluSx SINE Alu -19 293 1 702 285 0 16 chr11 32614102 32614288 -118169265 - MER5A DNA MER1_type -6 183 1 235 194 153 40 chr11 32614440 32614564 -118168989 + Charlie7 DNA MER1_type 21 158 -2454 701 282 285 0 chr11 32614590 32614941 -118168612 + HAL1 LINE L1 154 604 -1903 566 305 68 16 chr11 32614953 32615202 -118168351 + HAL1 LINE L1 645 906 -1601 207 25 75 0 chr11 32615219 32615259 -118168294 + A-rich Low_complexity Low_complexity 1 43 0 529 278 128 21 chr11 32615338 32615911 -118167642 + HAL1 LINE L1 1185 1887 -620 23 33 0 0 chr11 32616828 32616858 -118166695 + AT_rich Low_complexity Low_complexity 1 30 0 268 396 53 27 chr11 32617220 32617407 -118166146 - L3b LINE CR1 -8 1575 1384 856 239 58 5 chr11 32617699 32617904 -118165649 - MIR SINE MIR -10 252 37 2583 164 33 14 chr11 32620272 32620783 -118162770 + L1MB5 LINE L1 5646 6166 -8 237 336 211 19 chr11 32620949 32621157 -118162396 + MIR SINE MIR 9 256 -6 704 219 57 10 chr11 32621221 32621419 -118162134 - LTR33A LTR ERVL -3 520 309 458 215 188 13 chr11 32621449 32621598 -118161955 - MER96 DNA MER1_type? 0 175 1 876 255 75 0 chr11 32621650 32621862 -118161691 - MIR SINE MIR -27 235 8 181 281 211 44 chr11 32622046 32622160 -118161393 - L2 LINE L2 -2 3270 3138 193 272 79 50 chr11 32622171 32622307 -118161246 - L2 LINE L2 -288 3025 2880 2129 76 0 11 chr11 32622307 32622583 -118160970 + AluSq SINE Alu 5 277 -36 193 272 79 50 chr11 32622583 32622648 -118160905 - L2 LINE L2 -433 2880 2818 888 137 11 22 chr11 32622685 32622867 -118160686 + GA-rich Low_complexity Low_complexity 1 180 0 240 320 90 16 chr11 32622876 32622998 -118160555 - L2 LINE L2 -456 2858 2728 1582 163 77 25 chr11 32623016 32623342 -118160211 + MER2 DNA MER2_type 1 343 -1 1330 195 78 67 chr11 32623353 32623804 -118159749 + LTR16A1 LTR ERVL 1 456 -1 312 91 0 0 chr11 32624072 32624116 -118159437 + (CAGC)n Simple_repeat Simple_repeat 2 45 0 277 239 177 35 chr11 32624134 32624247 -118159306 - L2 LINE L2 -7 3306 3178 1243 102 30 5 chr11 32624398 32624595 -118158958 - THE1C-int LTR MaLR -1378 202 1 2123 142 11 26 chr11 32624595 32624976 -118158577 - THE1C LTR MaLR 0 375 1 1992 101 49 11 chr11 32625357 32625644 -118157909 - AluSg SINE Alu -12 298 1 1786 116 0 92 chr11 32625766 32626094 -118157459 + MER4A LTR ERV1 367 664 0 2231 113 0 0 chr11 32627853 32628155 -118155398 - AluSc SINE Alu -7 302 1 335 234 43 0 chr11 32628155 32628241 -118155312 - MIR SINE MIR -94 168 76 213 271 75 75 chr11 32628477 32628584 -118154969 - MIR SINE MIR -108 154 48 205 125 0 0 chr11 32631069 32631101 -118152452 + L2 LINE L2 3272 3303 -10 315 211 18 0 chr11 32631206 32631263 -118152290 + L2 LINE L2 3214 3271 -1 24 0 0 0 chr11 32634678 32634702 -118148851 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr11 32634828 32634876 -118148677 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr11 32635080 32635101 -118148452 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chr11 32635491 32635520 -118148033 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 745 322 13 9 chr11 32635989 32636222 -118147331 - MIR SINE MIR -27 235 2 499 245 39 0 chr11 32636516 32636618 -118146935 - MER81 DNA DNA -8 106 1 21 36 0 0 chr11 32636754 32636782 -118146771 + AT_rich Low_complexity Low_complexity 1 28 0 339 25 0 0 chr11 32637137 32637177 -118146376 + (TG)n Simple_repeat Simple_repeat 1 40 0 25 0 0 0 chr11 32638109 32638134 -118145419 + AT_rich Low_complexity Low_complexity 1 25 0 2154 100 36 3 chr11 32638302 32638603 -118144950 - AluY SINE Alu 0 311 1 506 216 144 0 chr11 32640229 32640354 -118143199 - MIR SINE MIR -2 260 118 2250 172 50 23 chr11 32640389 32640826 -118142727 + MLT2B1 LTR ERVL 1 449 -71 787 142 8 15 chr11 32640869 32641003 -118142550 + FLAM_C SINE Alu 1 133 -10 48 18 0 0 chr11 32641014 32641069 -118142484 + AT_rich Low_complexity Low_complexity 1 55 0 255 62 0 0 chr11 32641069 32641101 -118142452 + MLT2C1 LTR ERVL 358 389 -8 301 290 36 21 chr11 32641105 32641298 -118142255 - L1MEc LINE L1 -4178 2218 2023 267 309 54 40 chr11 32641358 32641507 -118142046 - L1MEc LINE L1 -5699 506 356 24 53 0 0 chr11 32641527 32641565 -118141988 + AT_rich Low_complexity Low_complexity 1 38 0 265 396 53 27 chr11 32691894 32692081 -118091472 - L3b LINE CR1 -8 1575 1384 860 239 58 5 chr11 32692373 32692578 -118090975 - MIR SINE MIR -10 252 37 2571 164 33 14 chr11 32694946 32695457 -118088096 + L1MB5 LINE L1 5646 6166 -8 234 336 211 19 chr11 32695624 32695832 -118087721 + MIR SINE MIR 9 256 -6 713 219 57 10 chr11 32695896 32696094 -118087459 - LTR33A LTR ERVL -3 520 309 468 215 188 13 chr11 32696124 32696273 -118087280 - MER96 DNA MER1_type? 0 175 1 876 255 75 0 chr11 32696325 32696537 -118087016 - MIR SINE MIR -27 235 8 187 272 211 44 chr11 32696721 32696835 -118086718 - L2 LINE L2 -2 3270 3138 215 287 79 50 chr11 32696846 32696982 -118086571 - L2 LINE L2 -288 3025 2880 2142 80 0 11 chr11 32696982 32697258 -118086295 + AluSq SINE Alu 5 277 -36 215 287 79 50 chr11 32697258 32697323 -118086230 - L2 LINE L2 -433 2880 2818 212 175 25 0 chr11 32697323 32697363 -118086190 + GA-rich Low_complexity Low_complexity 1 41 0 906 134 0 32 chr11 32697364 32697550 -118086003 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 244 320 90 16 chr11 32697559 32697681 -118085872 - L2 LINE L2 -456 2858 2728 1578 163 77 25 chr11 32697699 32698025 -118085528 + MER2 DNA MER2_type 1 343 -1 1373 195 78 67 chr11 32698036 32698487 -118085066 + LTR16A1 LTR ERVL 1 456 -1 312 91 0 0 chr11 32698755 32698799 -118084754 + (CAGC)n Simple_repeat Simple_repeat 2 45 0 276 239 177 35 chr11 32698817 32698930 -118084623 - L2 LINE L2 -7 3306 3178 1248 102 30 5 chr11 32699081 32699278 -118084275 - THE1C-int LTR MaLR -1378 202 1 2163 145 11 21 chr11 32699278 32699657 -118083896 - THE1C LTR MaLR 0 375 1 2007 104 49 11 chr11 32700038 32700325 -118083228 - AluSg SINE Alu -12 298 1 1815 113 0 92 chr11 32700447 32700775 -118082778 + MER4A LTR ERV1 367 664 0 2259 113 0 0 chr11 32702534 32702836 -118080717 - AluSc SINE Alu -7 302 1 336 234 43 0 chr11 32702836 32702922 -118080631 - MIR SINE MIR -94 168 76 215 271 75 75 chr11 32703158 32703265 -118080288 - MIR SINE MIR -108 154 48 204 125 0 0 chr11 32705751 32705783 -118077770 + L2 LINE L2 3272 3303 -10 313 211 18 0 chr11 32705888 32705945 -118077608 + L2 LINE L2 3214 3271 -1 24 0 0 0 chr11 32709360 32709384 -118074169 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr11 32709510 32709558 -118073995 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr11 32709762 32709783 -118073770 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chr11 32710173 32710202 -118073351 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 738 322 13 9 chr11 32710671 32710904 -118072649 - MIR SINE MIR -27 235 2 507 245 39 0 chr11 32711198 32711300 -118072253 - MER81 DNA DNA -8 106 1 21 36 0 0 chr11 32711436 32711464 -118072089 + AT_rich Low_complexity Low_complexity 1 28 0 288 53 0 0 chr11 32711819 32711857 -118071696 + (TG)n Simple_repeat Simple_repeat 1 38 0 226 322 78 26 chr11 32712640 32712755 -118070798 + MLT1K LTR MaLR 3 123 -465 25 0 0 0 chr11 32712789 32712814 -118070739 + AT_rich Low_complexity Low_complexity 1 25 0 2162 100 37 3 chr11 32712989 32713288 -118070265 - AluY SINE Alu -2 309 1 503 216 144 0 chr11 32714914 32715039 -118068514 - MIR SINE MIR -2 260 118 2283 169 50 23 chr11 32715074 32715511 -118068042 + MLT2B1 LTR ERVL 1 449 -71 810 142 8 15 chr11 32715554 32715688 -118067865 + FLAM_C SINE Alu 1 133 -10 48 18 0 0 chr11 32715699 32715754 -118067799 + AT_rich Low_complexity Low_complexity 1 55 0 258 62 0 0 chr11 32715754 32715786 -118067767 + MLT2B1 LTR ERVL 476 507 -8 275 290 36 21 chr11 32715790 32715983 -118067570 - L1MEc LINE L1 -4178 2218 2023 280 281 24 12 chr11 32716110 32716192 -118067361 - L1MEc LINE L1 -5767 438 356 24 53 0 0 chr11 32716212 32716250 -118067303 + AT_rich Low_complexity Low_complexity 1 38 0 201 94 0 0 chr11 32716477 32716509 -118067044 + (CAAAAA)n Simple_repeat Simple_repeat 1 32 0 1403 187 4 16 chr11 32717054 32717305 -118066248 - MLT1E1 LTR MaLR -2 652 405 906 189 0 6 chr11 32717381 32717545 -118066008 - MLT1E1 LTR MaLR -402 252 90 2384 64 0 58 chr11 32717987 32718316 -118065237 - AluY SINE Alu -1 310 1 43053 31 22 1 chr11 32718335 32724361 -118059192 - L1HS LINE L1 0 6155 2 22 0 0 0 chr11 32724427 32724449 -118059104 + AT_rich Low_complexity Low_complexity 1 22 0 1398 246 103 13 chr11 32725113 32725561 -118057992 + MLT1L LTR MaLR 121 608 -7 22 35 0 0 chr11 32727145 32727174 -118056379 + AT_rich Low_complexity Low_complexity 1 29 0 523 250 0 112 chr11 32729730 32729844 -118053709 + MIR SINE MIR 68 193 -69 189 0 0 0 chr11 32729844 32729865 -118053688 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2252 85 0 3 chr11 32729867 32730150 -118053403 - AluSp SINE Alu -31 282 1 523 250 0 112 chr11 32730150 32730228 -118053325 + MIR SINE MIR 194 241 -21 2147 113 0 7 chr11 32730418 32730710 -118052843 - AluSx SINE Alu -22 290 1 2275 74 0 46 chr11 32731197 32731520 -118052033 + AluY SINE Alu 1 308 -3 261 0 0 0 chr11 32731626 32731655 -118051898 + (T)n Simple_repeat Simple_repeat 1 29 0 647 229 22 49 chr11 32731889 32732072 -118051481 + MLT1K LTR MaLR 377 554 -34 27656 77 8 6 chr11 32732075 32738215 -118045338 - L1PA6 LINE L1 -1 6153 11 519 145 0 13 chr11 32738341 32738417 -118045136 - Charlie3 DNA MER1_type 0 2712 2638 863 286 91 48 chr11 32738674 32739243 -118044310 - L2 LINE L2 -45 3268 2670 931 251 57 22 chr11 32739324 32739784 -118043769 + MLT1J LTR MaLR 1 501 -10 1609 180 29 0 chr11 32740067 32740339 -118043214 + AluJo SINE Alu 1 280 -32 252 0 0 0 chr11 32740339 32740367 -118043186 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 628 268 131 77 chr11 32741196 32741566 -118041987 + MLT1J LTR MaLR 1 442 -69 795 161 37 50 chr11 32741859 32742157 -118041396 + MLT1A1 LTR MaLR 1 365 0 423 296 19 0 chr11 32742255 32742363 -118041190 + L2 LINE L2 3200 3309 -4 189 102 0 61 chr11 32743016 32743065 -118040488 + (GGAGA)n Simple_repeat Simple_repeat 2 47 0 1796 183 17 40 chr11 32743161 32743561 -118039992 + MLT2D LTR ERVL 1 490 -30 513 0 0 0 chr11 32744063 32744120 -118039433 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 1417 167 22 97 chr11 32744120 32744491 -118039062 - MER7A DNA MER2_type -4 342 2 297 0 0 0 chr11 32744493 32744526 -118039027 + (CA)n Simple_repeat Simple_repeat 2 34 0 249 57 29 0 chr11 32744532 32744567 -118038986 + MLT2D LTR ERVL 379 414 0 467 277 139 12 chr11 32744999 32745165 -118038388 + MIR SINE MIR 65 251 -11 1139 200 0 28 chr11 32745664 32745879 -118037674 + AluJo SINE Alu 1 209 -103 648 171 9 9 chr11 32745885 32745996 -118037557 + FRAM SINE Alu 34 144 -32 2243 117 0 0 chr11 32745996 32746287 -118037266 - AluSp SINE Alu -22 291 1 2002 134 0 3 chr11 32746317 32746641 -118036912 + AluSx SINE Alu 1 323 0 899 176 18 0 chr11 32747114 32747279 -118036274 + MIR SINE MIR 12 179 -83 421 267 0 19 chr11 32747372 32747477 -118036076 + Charlie2 DNA MER1_type 46 148 -2714 738 203 154 45 chr11 32747693 32748004 -118035549 + Charlie2 DNA MER1_type 2274 2618 -244 562 236 60 107 chr11 32748195 32748580 -118034973 + L1MC5 LINE L1 6844 7210 -751 295 229 101 46 chr11 32748744 32748853 -118034700 + L1MC5 LINE L1 7276 7390 -571 386 266 93 66 chr11 32748857 32748909 -118034644 + L1MC5 LINE L1 7474 7523 -438 2047 76 0 15 chr11 32748909 32749173 -118034380 + AluSg SINE Alu 50 309 -1 386 266 93 66 chr11 32749173 32749560 -118033993 + L1MC5 LINE L1 7523 7925 -36 815 214 68 5 chr11 32749570 32749776 -118033777 + Charlie2 DNA MER1_type 2637 2855 -7 185 290 86 21 chr11 32752055 32752148 -118031405 - L2 LINE L2 0 3272 3174 303 274 18 92 chr11 32752340 32752398 -118031155 - L1ME4a LINE L1 -175 5946 5885 700 187 0 8 chr11 32752398 32752532 -118031021 + FLAM_C SINE Alu 1 133 0 303 274 18 92 chr11 32752532 32752637 -118030916 - L1ME4a LINE L1 -236 5885 5795 344 332 85 27 chr11 32752646 32752905 -118030648 - L1ME4a LINE L1 -387 5734 5461 31 44 0 0 chr11 32752933 32752978 -118030575 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr11 32753016 32753041 -118030512 + AT_rich Low_complexity Low_complexity 1 25 0 180 219 0 0 chr11 32755106 32755147 -118028406 - L2 LINE L2 -78 3194 3154 2415 76 0 0 chr11 32756686 32756988 -118026565 + AluSc SINE Alu 1 302 -7 2206 117 0 3 chr11 32758242 32758549 -118025004 - AluSx SINE Alu -6 306 1 21600 23 6 0 chr11 32758937 32762276 -118021277 + L1PA3 LINE L1 2809 6153 -2 191 230 122 138 chr11 32762308 32762504 -118021049 + MIR3 SINE MIR 2 194 -14 237 353 69 0 chr11 32762616 32762718 -118020835 + MIR SINE MIR 117 225 -37 1727 130 59 25 chr11 32763048 32763370 -118020183 - MER44D DNA MER2_type -6 603 1 2190 103 3 3 chr11 32764170 32764461 -118019092 - AluSx SINE Alu -21 291 1 1981 180 44 15 chr11 32766531 32766937 -118016616 + MER47B DNA MER2_type 1 418 0 288 352 94 8 chr11 32767768 32767896 -118015657 + L2 LINE L2 3134 3272 0 22 0 0 0 chr11 32768669 32768691 -118014862 + AT_rich Low_complexity Low_complexity 1 22 0 774 243 153 0 chr11 32768692 32768914 -118014639 - MIR SINE MIR 0 262 7 2229 176 9 40 chr11 32769322 32769694 -118013859 - LOR1b LTR ERV1 0 461 104 1826 176 0 10 chr11 32769694 32770007 -118013546 + AluJb SINE Alu 1 310 -2 2229 176 9 40 chr11 32770007 32770078 -118013475 - LOR1b LTR ERV1 -357 104 32 884 171 30 0 chr11 32770261 32770425 -118013128 + MER33 DNA MER1_type 1 169 -155 315 274 39 67 chr11 32770599 32770778 -118012775 + L1MC5 LINE L1 7461 7634 -327 261 0 0 0 chr11 32771623 32771652 -118011901 + (CCA)n Simple_repeat Simple_repeat 1 29 0 297 239 168 76 chr11 32771744 32771926 -118011627 + MIR SINE MIR 19 206 -56 326 247 51 10 chr11 32773717 32773879 -118009674 + MIR SINE MIR 15 238 -24 782 149 58 0 chr11 32773880 32774034 -118009519 + MER33 DNA MER1_type 15 177 -147 505 234 68 37 chr11 32774034 32774253 -118009300 - L1MCa LINE L1 -5269 1338 906 236 154 19 0 chr11 32774270 32774322 -118009231 + MER33 DNA MER1_type 189 241 -122 2292 107 3 0 chr11 32774495 32774803 -118008750 - AluSq SINE Alu -4 309 1 229 313 16 0 chr11 32775077 32775141 -118008412 + L3 LINE CR1 1502 1566 -11 474 273 41 16 chr11 32775327 32775448 -118008105 - L1ME LINE L1 -578 5586 5463 503 168 142 9 chr11 32775449 32775562 -118007991 - MER20 DNA MER1_type -2 217 90 4273 234 104 18 chr11 32775613 32777307 -118006246 - L1M2 LINE L1 -730 5448 3624 448 296 41 115 chr11 32777310 32777702 -118005851 - HAL1 LINE L1 -2097 410 48 951 177 0 0 chr11 32777712 32777859 -118005694 + FRAM SINE Alu 1 146 -30 431 299 84 57 chr11 32778150 32778518 -118005035 - L2 LINE L2 -1608 1706 1329 2035 123 35 59 chr11 32778627 32779000 -118004553 + THE1B LTR MaLR 1 364 0 229 342 70 32 chr11 32779173 32779360 -118004193 - MIR SINE MIR -40 222 29 310 303 156 8 chr11 32781125 32781247 -118002306 - MIR SINE MIR -28 234 95 281 206 82 27 chr11 32781684 32781757 -118001796 + MIR3 SINE MIR 115 191 -17 1983 166 3 20 chr11 32781810 32782153 -118001400 + MER1B DNA MER1_type 1 337 0 2207 100 0 39 chr11 32782440 32782750 -118000803 - AluSx SINE Alu -14 298 1 705 212 125 5 chr11 32783348 32783532 -118000021 - L1ME2 LINE L1 -9 6155 5950 2128 123 0 7 chr11 32784256 32784557 -117998996 - AluSx SINE Alu -13 299 1 205 277 0 84 chr11 32784711 32784794 -117998759 - L2 LINE L2 0 3313 3238 589 248 143 11 chr11 32784868 32785079 -117998474 + MIR SINE MIR 5 228 -34 3321 217 66 23 chr11 32785318 32786143 -117997410 - MER21B LTR ERV1 0 863 1 216 320 89 76 chr11 32786934 32787159 -117996394 + L2 LINE L2 3037 3264 -8 20692 148 39 8 chr11 32788423 32792743 -117990810 + L1MA3 LINE L1 11 4458 -3107 3331 181 25 17 chr11 32792745 32792798 -117990755 + L1MA3 LINE L1 4868 4919 -2646 2075 129 16 3 chr11 32792798 32793101 -117990452 + AluSx SINE Alu 1 307 -5 2289 106 0 3 chr11 32793106 32793407 -117990146 + AluSc SINE Alu 1 300 -9 3331 181 25 17 chr11 32793407 32794038 -117989515 + L1MA3 LINE L1 4922 5563 -2002 * 5951 114 35 10 chr11 32794034 32795083 -117988470 + L1MA3 LINE L1 6649 7722 -2 452 205 92 76 chr11 32795099 32795284 -117988269 - MER115 DNA AcHobo -1 692 505 537 181 0 0 chr11 32795286 32795380 -117988173 + MLT1A1 LTR MaLR 74 167 -198 944 129 0 0 chr11 32795385 32795517 -117988036 - AluSx SINE Alu -7 305 174 746 140 0 0 chr11 32795517 32795624 -117987929 - AluSx SINE Alu -200 112 6 665 164 242 6 chr11 32795628 32795793 -117987760 + MLT1A1 LTR MaLR 162 365 0 790 178 57 55 chr11 32796072 32796467 -117987086 + MSTD LTR MaLR 1 396 0 24 32 0 0 chr11 32796472 32796503 -117987050 + AT_rich Low_complexity Low_complexity 1 31 0 3101 209 12 5 chr11 32796512 32797153 -117986400 + MER82 DNA MER2_type 7 652 -1 629 291 99 18 chr11 32797301 32797583 -117985970 + L1M4 LINE L1 2906 3210 -2936 3559 121 47 28 chr11 32797610 32798247 -117985306 - L1PA15 LINE L1 -61 6104 5456 23 0 0 0 chr11 32798255 32798278 -117985275 + AT_rich Low_complexity Low_complexity 1 23 0 395 270 52 26 chr11 32798349 32798464 -117985089 - L2 LINE L2 -1 3271 3154 254 361 72 0 chr11 32798472 32798569 -117984984 - MIR SINE MIR -111 151 48 723 319 64 73 chr11 32799305 32799956 -117983597 + L2 LINE L2 2618 3271 -1 2140 118 34 0 chr11 32800482 32800778 -117982775 - AluSg SINE Alu -4 306 1 2296 96 7 0 chr11 32802087 32802388 -117981165 - AluSg SINE Alu -7 303 1 4723 66 5 0 chr11 32802418 32803027 -117980526 - L1PA8 LINE L1 0 6172 5561 5139 94 7 2 chr11 32803028 32803967 -117979586 + L1PA8 LINE L1 4618 5559 -613 182 278 7 20 chr11 32804077 32804228 -117979325 + CT-rich Low_complexity Low_complexity 2 150 0 2664 140 45 25 chr11 32804672 32805187 -117978366 - Tigger3(Golem) DNA MER2_type -1 3028 2504 1530 199 4 7 chr11 32805201 32805482 -117978071 - AluJo SINE Alu -30 282 3 979 203 11 0 chr11 32805504 32805681 -117977872 - Tigger3(Golem) DNA MER2_type -2848 181 3 351 0 0 0 chr11 32805800 32805839 -117977714 + (TG)n Simple_repeat Simple_repeat 2 40 0 4175 173 18 8 chr11 32805887 32806457 -117977096 - LTR39 LTR ERV1 0 783 201 4111 86 9 2 chr11 32806457 32807007 -117976546 - MER41A LTR ERV1 0 554 1 4175 173 18 8 chr11 32807007 32807211 -117976342 - LTR39 LTR ERV1 -582 201 1 2354 92 10 3 chr11 32807742 32808047 -117975506 - AluSx SINE Alu -5 307 1 22 0 0 0 chr11 32808050 32808072 -117975481 + AT_rich Low_complexity Low_complexity 1 22 0 1249 200 91 62 chr11 32808109 32808161 -117975392 - MSTD LTR MaLR 0 396 347 1245 199 92 15 chr11 32808161 32808433 -117975120 - AluJo SINE Alu -17 295 3 1249 200 91 62 chr11 32808433 32808765 -117974788 - MSTD LTR MaLR -49 347 1 1608 171 8 0 chr11 32810128 32810379 -117973174 + AluJb SINE Alu 48 300 -12 207 0 0 0 chr11 32810379 32810402 -117973151 + (TA)n Simple_repeat Simple_repeat 1 23 0 694 238 87 0 chr11 32810920 32811092 -117972461 - MER5A DNA MER1_type -2 187 1 1817 226 116 42 chr11 32811946 32812550 -117971003 - L1ME2 LINE L1 -24 6140 5477 2119 137 3 10 chr11 32812550 32812864 -117970689 - AluSx SINE Alu 0 312 1 1817 226 116 42 chr11 32812864 32812948 -117970605 - L1ME2 LINE L1 -687 5477 5401 306 148 0 0 chr11 32813492 32813546 -117970007 + (CCCCCA)n Simple_repeat Simple_repeat 6 59 0 22 35 0 0 chr11 32816535 32816564 -117966989 + GC_rich Low_complexity Low_complexity 1 29 0 233 101 58 43 chr11 32816724 32816793 -117966760 + (GGGTG)n Simple_repeat Simple_repeat 5 74 0 573 160 0 0 chr11 32816797 32816941 -117966612 + G-rich Low_complexity Low_complexity 1 144 0 242 218 51 13 chr11 32816954 32817032 -117966521 + G-rich Low_complexity Low_complexity 2 82 0 1017 238 143 7 chr11 32818412 32818833 -117964720 - L1ME2 LINE L1 -915 5231 4754 1671 209 55 34 chr11 32819329 32819823 -117963730 - MLT1D LTR MaLR -1 504 1 26 0 0 0 chr11 32820100 32820126 -117963427 + AT_rich Low_complexity Low_complexity 1 26 0 2442 69 0 7 chr11 32821285 32821590 -117961963 - AluY SINE Alu -8 303 1 25 31 0 0 chr11 32822282 32822314 -117961239 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr11 32823191 32823227 -117960326 + AT_rich Low_complexity Low_complexity 1 36 0 273 259 27 45 chr11 32825351 32825463 -117958090 + L3b LINE CR1 1319 1428 -155 264 318 91 19 chr11 32828564 32828718 -117954835 - MIR SINE MIR -49 213 49 29 28 0 0 chr11 32829564 32829600 -117953953 + AT_rich Low_complexity Low_complexity 1 36 0 403 160 40 0 chr11 32831119 32831194 -117952359 - L1ME3A LINE L1 -26 6144 6067 2344 105 0 0 chr11 32831205 32831510 -117952043 - AluSx SINE Alu -7 305 1 26 0 0 0 chr11 32832044 32832070 -117951483 + AT_rich Low_complexity Low_complexity 1 26 0 228 111 0 0 chr11 32832910 32832946 -117950607 + (T)n Simple_repeat Simple_repeat 1 36 0 1518 185 49 51 chr11 32833342 32833731 -117949822 - MLT1B LTR MaLR -2 388 1 22 0 0 0 chr11 32834757 32834779 -117948774 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr11 32835719 32835764 -117947789 + AT_rich Low_complexity Low_complexity 1 45 0 529 138 11 0 chr11 32835802 32835889 -117947664 + FLAM_C SINE Alu 21 108 -35 27 0 0 0 chr11 32835914 32835941 -117947612 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr11 32835982 32836007 -117947546 + AT_rich Low_complexity Low_complexity 1 25 0 30 27 0 0 chr11 32838510 32838547 -117945006 + AT_rich Low_complexity Low_complexity 1 37 0 2094 126 0 0 chr11 32838974 32839268 -117944285 - AluSx SINE Alu -18 294 1 858 132 8 0 chr11 32839277 32839398 -117944155 - AluSq/x SINE Alu -190 122 1 1876 137 22 29 chr11 32839477 32839791 -117943762 + AluSx SINE Alu 1 312 0 527 83 0 48 chr11 32843419 32843503 -117940050 + MADE1 DNA Mariner 1 80 0 346 201 52 52 chr11 32843546 32843700 -117939853 - L1ME3A LINE L1 -2401 5407 5254 2146 113 3 0 chr11 32844386 32844679 -117938874 - AluSx SINE Alu -18 294 1 2206 125 26 6 chr11 32845075 32845427 -117938126 - MER46B DNA MER2_type 0 236 3 22 0 0 0 chr11 32845476 32845498 -117938055 + AT_rich Low_complexity Low_complexity 1 22 0 2839 217 113 11 chr11 32845544 32846637 -117936916 - L1ME1 LINE L1 -4 6231 5032 393 210 107 107 chr11 32846635 32846878 -117936675 - L1ME1 LINE L1 -4194 2202 1960 * 1746 305 126 26 chr11 32846883 32848319 -117935234 - L1ME1 LINE L1 -4781 1615 37 2200 112 0 0 chr11 32848344 32848638 -117934915 - AluSx SINE Alu -18 294 1 232 253 58 11 chr11 32848834 32848921 -117934632 + L1MC/D LINE L1 5687 5777 -2031 27 49 0 0 chr11 32849033 32849074 -117934479 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 32849642 32849663 -117933890 + AT_rich Low_complexity Low_complexity 1 21 0 325 293 171 24 chr11 32852008 32852172 -117931381 + MIR SINE MIR 4 191 -71 1606 102 40 0 chr11 32852527 32852753 -117930800 - AluSg/x SINE Alu -2 308 74 484 81 0 0 chr11 32853675 32853737 -117929816 - Alu SINE Alu -15 295 234 180 332 125 61 chr11 32854004 32854380 -117929173 + L2 LINE L2 2341 2740 -574 445 211 29 19 chr11 32854405 32854509 -117929044 - FLAM_C SINE Alu -15 128 24 1186 145 42 10 chr11 32854827 32855020 -117928533 - MER3 DNA MER1_type -1 208 10 209 207 52 35 chr11 32855045 32855103 -117928450 + L2 LINE L2 3214 3272 0 2095 123 3 3 chr11 32855976 32856284 -117927269 + AluSx SINE Alu 3 310 -2 845 231 16 0 chr11 32858907 32859089 -117924464 - MER58A DNA MER1_type -2 222 38 3092 238 75 48 chr11 32859094 32860182 -117923371 - L2 LINE L2 -500 2814 1655 2211 74 0 3 chr11 32860691 32860999 -117922554 - AluSq SINE Alu 0 307 1 503 280 133 18 chr11 32861846 32862071 -117921482 + MIR SINE MIR 3 253 -9 452 127 14 0 chr11 32862212 32862283 -117921270 + L1MA6 LINE L1 6067 6138 -162 778 152 15 0 chr11 32862284 32862416 -117921137 + AluSg/x SINE Alu 166 299 -11 941 164 0 6 chr11 32862416 32862593 -117920960 + L1MA6 LINE L1 6125 6300 0 1824 191 91 9 chr11 32863561 32864012 -117919541 - L1MC4a LINE L1 -223 7585 7098 780 194 61 6 chr11 32864686 32864851 -117918702 + FRAM SINE Alu 1 174 -2 22 0 0 0 chr11 32867440 32867462 -117916091 + AT_rich Low_complexity Low_complexity 1 22 0 880 111 0 0 chr11 32867566 32867683 -117915870 - AluSg/x SINE Alu -21 289 173 1747 157 7 3 chr11 32867828 32868115 -117915438 + AluJb SINE Alu 1 288 -24 396 302 26 0 chr11 32868943 32869059 -117914494 + L2 LINE L2 3192 3310 -3 472 213 120 0 chr11 32869262 32869370 -117914183 + FLAM_C SINE Alu 1 121 -22 2363 125 3 3 chr11 32869427 32869787 -117913766 + MER46B DNA MER2_type 1 235 -1 1802 179 0 3 chr11 32869986 32870288 -117913265 + AluSx SINE Alu 1 301 -11 608 275 57 36 chr11 32870612 32870859 -117912694 + MIR SINE MIR 11 262 0 237 373 49 10 chr11 32871651 32871753 -117911800 + MIR SINE MIR 20 125 -83 21 0 0 0 chr11 32871922 32871943 -117911610 + AT_rich Low_complexity Low_complexity 1 21 0 316 289 48 19 chr11 32872134 32872238 -117911315 - MIR SINE MIR -91 171 65 9789 151 32 13 chr11 32872246 32875013 -117908540 + L1MA5 LINE L1 3488 6300 0 250 146 0 0 chr11 32875114 32875155 -117908398 + L1MC4 LINE L1 6504 6544 -1498 1918 244 183 55 chr11 32875197 32876296 -117907257 + L1MC4 LINE L1 6654 7892 -150 251 259 46 28 chr11 32876370 32876478 -117907075 + L1MC4 LINE L1 7904 8013 -29 808 257 99 37 chr11 32876527 32876799 -117906754 - L2 LINE L2 -1 3312 3024 1424 198 33 16 chr11 32876802 32877105 -117906448 - L1M4 LINE L1 -559 5615 5308 346 278 97 75 chr11 32877175 32877547 -117906006 + L1MEd LINE L1 707 1068 -5051 688 304 45 35 chr11 32877566 32878075 -117905478 + L1MEd LINE L1 1156 1669 -4641 2290 93 6 0 chr11 32878086 32878397 -117905156 + AluSp SINE Alu 1 313 0 4115 123 33 1 chr11 32878536 32879211 -117904342 + L1MA5 LINE L1 5601 6296 -4 384 252 175 26 chr11 32879211 32879400 -117904153 - MER54A LTR ERVL -283 361 147 24 85 0 0 chr11 32879427 32879486 -117904067 + AT_rich Low_complexity Low_complexity 1 59 0 299 398 41 0 chr11 32879489 32879660 -117903893 - L2 LINE L2 -1733 1581 1404 2234 180 62 17 chr11 32879726 32880209 -117903344 - MLT1D LTR MaLR 0 505 1 495 260 110 27 chr11 32880231 32880377 -117903176 + MER5A DNA MER1_type 2 159 -30 325 89 0 54 chr11 32880745 32880801 -117902752 - MIR SINE MIR -55 207 155 1196 78 0 0 chr11 32880805 32880989 -117902564 - AluY SINE Alu 0 313 130 207 0 0 0 chr11 32880989 32881012 -117902541 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2445 52 0 0 chr11 32881014 32881302 -117902251 - AluY SINE Alu -23 288 1 445 310 9 0 chr11 32881312 32881428 -117902125 - MIR SINE MIR -118 144 28 193 167 37 0 chr11 32881780 32881834 -117901719 + (TA)n Simple_repeat Simple_repeat 2 57 0 897 157 88 13 chr11 32882498 32882657 -117900896 + AluJb SINE Alu 129 299 -13 255 259 24 24 chr11 32882833 32882918 -117900635 + MER5A DNA MER1_type 70 154 -35 403 221 0 0 chr11 32883401 32883487 -117900066 - FRAM/FAM SINE Alu -80 86 1 22 0 0 0 chr11 32883954 32883976 -117899577 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr11 32884050 32884085 -117899468 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr11 32884450 32884487 -117899066 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr11 32884775 32884797 -117898756 + AT_rich Low_complexity Low_complexity 1 22 0 773 217 111 1 chr11 32887485 32887675 -117895878 + MER33 DNA MER1_type 1 198 -88 26 30 0 0 chr11 32889472 32889505 -117894048 + AT_rich Low_complexity Low_complexity 1 33 0 2667 257 76 23 chr11 32890176 32891263 -117892290 + L1ME3A LINE L1 5001 6144 -26 1085 268 60 31 chr11 32892238 32892690 -117890863 - L1MC4a LINE L1 -1817 5991 5527 370 304 20 0 chr11 32894193 32894304 -117889249 + MIR SINE MIR 38 151 -57 637 262 86 90 chr11 32894525 32895048 -117888505 + L1ME3A LINE L1 5643 6166 -4 24 67 0 0 chr11 32895048 32895093 -117888460 + AT_rich Low_complexity Low_complexity 1 45 0 2299 67 0 3 chr11 32896823 32897150 -117886403 - AluY SINE Alu 0 326 1 2130 104 0 0 chr11 32898158 32898438 -117885115 + AluSc SINE Alu 14 293 -16 667 244 212 37 chr11 32898691 32899101 -117884452 + MLT1D LTR MaLR 24 505 0 3378 188 35 9 chr11 32899152 32899829 -117883724 + MLT1D-int LTR MaLR 109 803 -568 6513 145 68 31 chr11 32899833 32901054 -117882499 - Tigger1 DNA MER2_type -1152 1266 1 2480 127 3 11 chr11 32901102 32901480 -117882073 - THE1C LTR MaLR 0 375 1 9748 111 29 42 chr11 32901480 32902601 -117880952 - THE1C-int LTR MaLR 0 1580 485 2259 81 3 14 chr11 32902601 32902897 -117880656 - AluY SINE Alu -18 293 1 9748 111 29 42 chr11 32902897 32903376 -117880177 - THE1C-int LTR MaLR -1095 485 1 779 132 0 69 chr11 32903376 32903520 -117880033 - THE1C LTR MaLR 0 375 242 2993 166 56 31 chr11 32903562 32904569 -117878984 + L1MB4 LINE L1 4726 5784 -396 189 0 0 0 chr11 32904569 32904590 -117878963 + (TG)n Simple_repeat Simple_repeat 2 22 0 247 28 0 0 chr11 32904636 32904672 -117878881 - L1PA3 LINE L1 -3 6152 6117 372 209 29 33 chr11 32904690 32905018 -117878535 + (TATAA)n Simple_repeat Simple_repeat 1 326 0 289 182 18 18 chr11 32905018 32905073 -117878480 + Tigger5 DNA MER2_type 1 55 -2268 * 588 171 38 0 chr11 32905065 32905170 -117878383 + Tigger5 DNA MER2_type 2215 2323 0 1236 208 47 52 chr11 32905170 32905405 -117878148 + L1MB4 LINE L1 5791 6025 -155 2264 74 34 3 chr11 32905405 32905702 -117877851 - AluSc SINE Alu -2 307 2 1236 208 47 52 chr11 32905702 32905850 -117877703 + L1MB4 LINE L1 6025 6172 -8 184 272 304 22 chr11 32906278 32906502 -117877051 - L3 LINE CR1 -154 1423 1137 539 269 123 40 chr11 32906616 32906843 -117876710 + MIR SINE MIR 3 248 -14 2156 85 3 3 chr11 32907037 32907349 -117876204 + AluY SINE Alu 1 312 0 920 189 142 13 chr11 32907556 32907789 -117875764 + MER58B DNA MER1_type 78 340 -1 396 0 0 0 chr11 32907892 32907936 -117875617 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 310 290 87 51 chr11 32908197 32908335 -117875218 + HAL1 LINE L1 811 953 -1554 291 93 0 0 chr11 32908539 32908582 -117874971 + (CA)n Simple_repeat Simple_repeat 1 43 0 1090 237 14 0 chr11 32908676 32908891 -117874662 + MER58A DNA MER1_type 1 218 -6 1019 215 5 33 chr11 32908905 32909119 -117874434 - MER3 DNA MER1_type 0 209 2 1500 200 121 6 chr11 32909201 32909556 -117873997 + MSTD LTR MaLR 1 396 0 1858 145 62 0 chr11 32909625 32909744 -117873809 + AluSx SINE Alu 1 111 -201 369 0 0 0 chr11 32909744 32909785 -117873768 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1858 145 62 0 chr11 32909785 32909955 -117873598 + AluSx SINE Alu 111 308 -4 433 243 88 69 chr11 32911115 32911548 -117872005 + L1M4 LINE L1 2876 3316 -2830 693 264 13 12 chr11 32911571 32911792 -117871761 + L1ME3A LINE L1 11 233 -5837 1151 261 69 19 chr11 32911850 32912739 -117870814 + L1ME3A LINE L1 4746 5826 -278 285 182 171 0 chr11 32912715 32912803 -117870750 + L1MA6 LINE L1 5803 5905 -329 * 239 336 9 0 chr11 32912812 32912919 -117870634 + L1ME3A LINE L1 5862 5969 -135 4372 152 53 30 chr11 32913179 32914020 -117869533 + Tigger2 DNA MER2_type 1858 2718 0 2206 93 0 7 chr11 32914180 32914482 -117869071 - AluY SINE Alu -11 300 1 2293 107 0 0 chr11 32914632 32914941 -117868612 + AluSc SINE Alu 1 309 0 2231 78 0 3 chr11 32914955 32915249 -117868304 + AluY SINE Alu 6 298 -13 1735 154 33 54 chr11 32915484 32915888 -117867665 + L1MA8 LINE L1 5854 6250 -41 1101 84 54 0 chr11 32915964 32916130 -117867423 + L1PA11 LINE L1 6000 6174 0 207 273 55 0 chr11 32919394 32919449 -117864104 + L2 LINE L2 3214 3271 -1 1652 181 10 3 chr11 32922129 32922422 -117861131 + AluJo SINE Alu 1 295 -17 306 73 0 0 chr11 32922946 32922987 -117860566 + (TG)n Simple_repeat Simple_repeat 2 42 0 231 36 0 0 chr11 32922986 32923014 -117860539 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 1436 176 7 62 chr11 32923326 32923616 -117859937 + AluJo SINE Alu 9 282 -30 2141 88 0 10 chr11 32923781 32924078 -117859475 + AluY SINE Alu 1 294 -17 1616 185 14 0 chr11 32924455 32924742 -117858811 - AluJb SINE Alu -19 293 3 1749 131 76 4 chr11 32925141 32925416 -117858137 - AluSx SINE Alu -17 295 1 2095 86 10 14 chr11 32925578 32925870 -117857683 - AluSg SINE Alu -19 291 1 2224 104 3 0 chr11 32926050 32926358 -117857195 - AluSq SINE Alu -4 309 1 23 33 0 0 chr11 32926358 32926388 -117857165 + AT_rich Low_complexity Low_complexity 1 30 0 1872 141 3 53 chr11 32926447 32926567 -117856986 - AluSx SINE Alu -9 303 179 2273 103 0 3 chr11 32926567 32926869 -117856684 + AluSg SINE Alu 1 301 -9 1872 141 3 53 chr11 32926869 32927067 -117856486 - AluSx SINE Alu -133 179 1 2112 100 0 42 chr11 32927487 32927798 -117855755 + AluSx SINE Alu 1 298 -14 210 311 16 0 chr11 32928547 32928608 -117854945 - L3 LINE CR1 -1 1576 1515 680 317 68 28 chr11 32928629 32928954 -117854599 - L3 LINE CR1 -231 1346 1009 429 335 54 34 chr11 32929191 32929430 -117854123 - MIR SINE MIR -14 248 5 883 306 56 16 chr11 32930359 32930791 -117852762 - L1MC4a LINE L1 -1913 5895 5447 1368 192 10 51 chr11 32930812 32931124 -117852429 - AluJo SINE Alu -13 299 1 1027 222 96 20 chr11 32932083 32932575 -117850978 - MLT1E LTR MaLR 0 593 1 1281 148 35 5 chr11 32932737 32932939 -117850614 + AluJb SINE Alu 84 291 -21 896 265 5 0 chr11 32932979 32933168 -117850385 + MER58A DNA MER1_type 35 224 0 609 236 128 12 chr11 32934008 32934197 -117849356 - MIR SINE MIR -10 252 44 683 332 147 51 chr11 32934476 32935959 -117847594 + L2 LINE L2 1336 2961 -353 369 331 93 27 chr11 32936589 32936846 -117846707 - L2 LINE L2 -820 2494 2221 455 96 68 0 chr11 32937010 32937083 -117846470 + Alu SINE Alu 219 296 -15 344 267 35 0 chr11 32937083 32937169 -117846384 + MIR SINE MIR 171 259 -3 201 352 82 15 chr11 32938342 32938538 -117845015 - L2 LINE L2 -1243 2071 1863 840 306 128 10 chr11 32938554 32938953 -117844600 - L3 LINE CR1 -203 1374 929 485 333 140 38 chr11 32939249 32939957 -117843596 - L2 LINE L2 -4 3268 2458 449 223 121 70 chr11 32939962 32940119 -117843434 - MIR SINE MIR -1 261 97 1647 170 46 7 chr11 32940661 32940710 -117842843 - L1PB4 LINE L1 -1 6165 6119 2266 107 0 19 chr11 32940710 32941028 -117842525 - AluSq SINE Alu -1 312 1 1647 170 46 7 chr11 32941028 32941314 -117842239 - L1PB4 LINE L1 -47 6119 5830 2388 59 0 34 chr11 32941318 32941639 -117841914 - AluY SINE Alu -1 310 1 223 312 86 99 chr11 32941639 32941766 -117841787 - L2 LINE L2 -568 2746 2619 2266 46 3 7 chr11 32941766 32942087 -117841466 - AluY SINE Alu 0 320 1 223 312 86 99 chr11 32942087 32942218 -117841335 - L2 LINE L2 -695 2619 2489 240 35 0 0 chr11 32942218 32942247 -117841306 + (TG)n Simple_repeat Simple_repeat 1 29 0 223 312 86 99 chr11 32942247 32942310 -117841243 - L2 LINE L2 -825 2489 2427 23 92 0 0 chr11 32942646 32942711 -117840842 + AT_rich Low_complexity Low_complexity 1 65 0 974 186 67 105 chr11 32943244 32943307 -117840246 - L1ME1 LINE L1 -6 6160 6096 1474 207 0 11 chr11 32943307 32943592 -117839961 - AluJo SINE Alu -25 287 6 974 186 67 105 chr11 32943592 32943872 -117839681 - L1ME1 LINE L1 -70 6096 5830 272 197 16 33 chr11 32943923 32943984 -117839569 - MER2 DNA MER2_type -261 84 25 1308 210 81 73 chr11 32944034 32944293 -117839260 - L1ME1 LINE L1 -335 5831 5576 1895 161 0 0 chr11 32944293 32944601 -117838952 - AluSx SINE Alu 0 310 3 1308 210 81 73 chr11 32944601 32945423 -117838130 - L1ME1 LINE L1 -590 5576 4635 2179 109 143 8 chr11 32945423 32945800 -117837753 - MSTA LTR MaLR 0 428 1 1308 210 81 73 chr11 32945800 32946119 -117837434 - L1ME1 LINE L1 -1531 4635 4320 202 54 27 27 chr11 32946123 32946160 -117837393 + (TATAG)n Simple_repeat Simple_repeat 2 38 0 310 185 27 71 chr11 32946198 32946382 -117837171 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 527 242 51 13 chr11 32946427 32946584 -117836969 - L1ME1 LINE L1 -2001 4145 3983 22 35 0 0 chr11 32946620 32946649 -117836904 + AT_rich Low_complexity Low_complexity 1 29 0 586 247 36 10 chr11 32946657 32946851 -117836702 - L1ME1 LINE L1 -2376 3770 3572 248 290 130 7 chr11 32946895 32947033 -117836520 - L1ME1 LINE L1 -2475 3671 3517 2234 43 43 7 chr11 32947134 32947414 -117836139 + AluY SINE Alu 1 290 -21 800 132 7 29 chr11 32948435 32948571 -117834982 - FLAM_C SINE Alu 0 133 1 21 36 0 0 chr11 32949561 32949589 -117833964 + AT_rich Low_complexity Low_complexity 1 28 0 3676 256 63 66 chr11 32949964 32951266 -117832287 + L1MEc LINE L1 46 1343 -5053 2157 84 0 0 chr11 32951266 32951541 -117832012 - AluY SINE Alu -7 304 30 3676 256 63 66 chr11 32951541 32951962 -117831591 + L1MEc LINE L1 1343 1764 -4632 44064 38 4 1 chr11 32951962 32958096 -117825457 + L1PA3 LINE L1 2 6155 0 451 247 0 45 chr11 32958265 32958326 -117825227 + L1MA10 LINE L1 6188 6250 -84 7657 129 31 6 chr11 32958326 32959594 -117823959 - HSMAR2 DNA Mariner -1 1301 1 451 247 0 45 chr11 32959594 32959686 -117823867 + L1MA10 LINE L1 6250 6334 0 2195 264 169 34 chr11 32959997 32961184 -117822369 + L2 LINE L2 1925 3276 -37 1493 249 41 61 chr11 32961220 32961668 -117821885 + MLT2B1 LTR ERVL 42 481 -39 390 21 0 0 chr11 32961668 32961715 -117821838 + (CA)n Simple_repeat Simple_repeat 1 47 0 1493 249 41 61 chr11 32961715 32961755 -117821798 + MLT2B1 LTR ERVL 481 520 0 3105 131 78 0 chr11 32961773 32962262 -117821291 + MER1A DNA MER1_type 1 527 0 1715 140 24 86 chr11 32962351 32962723 -117820830 - L1MA9 LINE L1 -5 6307 5959 231 350 25 12 chr11 32966516 32966596 -117816957 + MIR SINE MIR 32 112 -150 2218 100 3 10 chr11 32967571 32967872 -117815681 + AluSp SINE Alu 1 299 -14 25 31 0 0 chr11 32967920 32967952 -117815601 + AT_rich Low_complexity Low_complexity 1 32 0 211 265 20 27 chr11 32968583 32968730 -117814823 + (TTATA)n Simple_repeat Simple_repeat 5 150 0 1459 165 56 25 chr11 32968735 32969020 -117814533 + MER7A DNA MER2_type 1 292 -54 2064 128 3 7 chr11 32969416 32969720 -117813833 - AluSq SINE Alu -10 303 1 7179 48 6 0 chr11 32972356 32974008 -117809545 - L1PA5 LINE L1 0 6154 4495 1758 147 4 4 chr11 32974075 32974347 -117809206 + AluSx SINE Alu 24 295 -17 1648 250 66 73 chr11 32974654 32975022 -117808531 - HsTC2a DNA Tc2 -1161 739 377 1465 75 5 16 chr11 32975022 32975209 -117808344 - AluSp SINE Alu -128 185 1 1648 250 66 73 chr11 32975209 32975581 -117807972 - HsTC2a DNA Tc2 -1523 377 4 2359 127 124 5 chr11 32975624 32976042 -117807511 - Tigger1 DNA MER2_type -1 2417 1950 5204 160 34 44 chr11 32976044 32976779 -117806774 + L1PA16 LINE L1 4252 4993 -1173 2321 119 0 0 chr11 32976779 32977091 -117806462 + AluSx SINE Alu 1 312 0 5204 160 34 44 chr11 32977091 32977452 -117806101 + L1PA16 LINE L1 4993 5356 -810 1671 128 97 0 chr11 32977452 32977709 -117805844 + AluSx SINE Alu 8 289 -23 5204 160 34 44 chr11 32977709 32978443 -117805110 + L1PA16 LINE L1 5356 6096 -70 2121 109 0 32 chr11 32978443 32978754 -117804799 - AluSx SINE Alu -11 301 1 5204 160 34 44 chr11 32978754 32978767 -117804786 + L1PA16 LINE L1 6096 6108 -58 2350 101 0 0 chr11 32978767 32979074 -117804479 - AluSg SINE Alu -3 307 1 5204 160 34 44 chr11 32979074 32979145 -117804408 + L1PA16 LINE L1 6108 6164 -2 7605 109 36 3 chr11 32979145 32980300 -117803253 - Tigger1 DNA MER2_type -454 1964 771 195 42 0 0 chr11 32980575 32980599 -117802954 + (TCTA)n Simple_repeat Simple_repeat 1 24 0 1832 141 0 27 chr11 32980694 32980991 -117802562 + AluJo SINE Alu 1 289 -23 573 260 88 11 chr11 32981056 32981237 -117802316 - L1ME1 LINE L1 -12 6154 5960 728 114 0 9 chr11 32981246 32981360 -117802193 - MLT1A2-int LTR MaLR -1258 113 1 1495 240 11 45 chr11 32981360 32981739 -117801814 - MLT1A2 LTR MaLR 0 374 9 342 324 0 0 chr11 32981743 32981845 -117801708 - MLT1A2 LTR MaLR -260 114 13 420 307 0 0 chr11 32981849 32981963 -117801590 - MLT1A2 LTR MaLR -260 114 1 37336 70 5 3 chr11 32982170 32987921 -117795632 + L1PA5 LINE L1 395 6151 -3 201 286 0 0 chr11 32988561 32988624 -117794929 + CT-rich Low_complexity Low_complexity 2 64 0 1430 136 0 26 chr11 32988631 32988859 -117794694 - AluJb SINE Alu -9 303 82 1393 268 157 39 chr11 32988905 32989658 -117793895 - HAL1 LINE L1 -338 2169 1328 1692 183 3 3 chr11 32989703 32990030 -117793523 - AluJb SINE Alu 0 327 1 781 260 91 9 chr11 32990054 32990273 -117793280 + MIR SINE MIR 5 241 -21 614 276 97 31 chr11 32990391 32990710 -117792843 - HAL1 LINE L1 -1417 1090 751 353 328 56 71 chr11 32990822 32991145 -117792408 - HAL1 LINE L1 -1861 646 329 942 184 0 6 chr11 32991415 32991583 -117791970 + AluJo SINE Alu 121 287 -25 703 253 35 5 chr11 32991767 32991965 -117791588 + MER3 DNA MER1_type 2 205 -4 32 26 0 0 chr11 32992159 32992198 -117791355 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr11 32992460 32992483 -117791070 + AT_rich Low_complexity Low_complexity 1 23 0 1803 133 22 0 chr11 32992487 32992801 -117790752 - AluSq SINE Alu 0 320 1 21 0 0 0 chr11 32993405 32993426 -117790127 + AT_rich Low_complexity Low_complexity 1 21 0 1335 158 38 0 chr11 32993789 32993998 -117789555 + AluJo SINE Alu 3 219 -93 242 98 235 0 chr11 32994043 32994094 -117789459 + MER3 DNA MER1_type 147 209 0 * 444 203 0 0 chr11 32994094 32994141 -117789412 - MER3 DNA MER1_type -162 47 1 593 261 100 54 chr11 32994407 32994613 -117788940 + HAL1b LINE L1 344 568 -780 2213 69 7 16 chr11 32994613 32994916 -117788637 - AluY SINE Alu -11 300 1 593 261 100 54 chr11 32994916 32994989 -117788564 + HAL1b LINE L1 568 636 -712 344 253 25 0 chr11 32995080 32995159 -117788394 + L2 LINE L2 3177 3257 -56 846 257 64 55 chr11 32995196 32995683 -117787870 + HAL1b LINE L1 658 1148 -200 323 278 198 0 chr11 32996062 32996224 -117787329 - L1MC4a LINE L1 -1882 5926 5733 408 231 71 101 chr11 32996285 32996523 -117787030 - L1MC4a LINE L1 -529 5633 5403 30 0 0 0 chr11 32996557 32996587 -117786966 + AT_rich Low_complexity Low_complexity 1 30 0 2000 139 0 0 chr11 32996677 32996964 -117786589 + AluSx SINE Alu 1 287 -25 23 54 0 0 chr11 32996964 32997001 -117786552 + AT_rich Low_complexity Low_complexity 1 37 0 234 163 113 62 chr11 32997847 32997927 -117785626 + L2 LINE L2 3121 3204 -109 807 175 34 178 chr11 32997938 32998077 -117785476 + MIR SINE MIR 2 130 -132 377 22 0 0 chr11 32998077 32998123 -117785430 - MADE1 DNA Mariner -34 46 1 807 175 34 178 chr11 32998123 32998230 -117785323 + MIR SINE MIR 130 251 -11 246 261 14 14 chr11 32998255 32998324 -117785229 + L2 LINE L2 3230 3298 -15 3858 189 52 35 chr11 32998362 32998542 -117785011 + L1MB7 LINE L1 4958 5134 -1050 1939 174 97 5 chr11 32998542 32998934 -117784619 - MSTA LTR MaLR 0 428 1 3858 189 52 35 chr11 32998934 32999102 -117784451 + L1MB7 LINE L1 5134 5298 -886 2300 98 3 0 chr11 32999102 32999398 -117784155 + AluY SINE Alu 1 297 -14 3858 189 52 35 chr11 32999398 33000217 -117783336 + L1MB7 LINE L1 5298 6163 -21 1360 143 14 0 chr11 33000236 33000445 -117783108 + AluJo SINE Alu 1 212 -100 354 155 52 0 chr11 33000456 33000572 -117782981 + (TA)n Simple_repeat Simple_repeat 1 122 0 678 280 39 58 chr11 33001099 33001201 -117782352 - MIR SINE MIR -8 254 152 1655 161 40 15 chr11 33001201 33001504 -117782049 - AluJb SINE Alu 0 310 1 678 280 39 58 chr11 33001504 33001656 -117781897 - MIR SINE MIR -110 152 3 2253 77 0 7 chr11 33004081 33004368 -117779185 + AluSg1 SINE Alu 1 285 -24 201 311 54 14 chr11 33004421 33004495 -117779058 + L2 LINE L2 3182 3258 -55 1414 264 91 27 chr11 33004740 33005289 -117778264 + L1MC4a LINE L1 5256 5839 -1969 1850 99 20 0 chr11 33005572 33005824 -117777729 - AluSq SINE Alu -56 257 1 2354 103 0 0 chr11 33005904 33006214 -117777339 - AluSg SINE Alu 0 310 1 1725 188 6 16 chr11 33006458 33006772 -117776781 - AluJb SINE Alu -1 311 1 610 289 171 11 chr11 33006839 33007126 -117776427 + L2 LINE L2 2980 3312 -1 369 0 0 0 chr11 33007444 33007485 -117776068 + (CA)n Simple_repeat Simple_repeat 2 42 0 1679 132 126 26 chr11 33007494 33007835 -117775718 - THE1C LTR MaLR 0 375 1 357 120 0 0 chr11 33007842 33007892 -117775661 - 5S rRNA rRNA -71 50 1 224 283 109 0 chr11 33008601 33008693 -117774860 - MIR SINE MIR -63 199 98 24 53 0 0 chr11 33009363 33009401 -117774152 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr11 33010311 33010337 -117773216 + AT_rich Low_complexity Low_complexity 1 26 0 394 275 58 82 chr11 33012820 33013027 -117770526 - MIR SINE MIR -4 258 57 198 303 15 0 chr11 33013174 33013240 -117770313 + MIR SINE MIR 87 153 -55 363 346 112 5 chr11 33013700 33013888 -117769665 - MIR SINE MIR -35 227 20 24 0 0 0 chr11 33014372 33014396 -117769157 + AT_rich Low_complexity Low_complexity 1 24 0 1581 180 16 74 chr11 33014828 33015206 -117768347 + MLT1A2 LTR MaLR 3 358 -16 745 217 56 123 chr11 33015206 33015597 -117767956 - MLT1A1 LTR MaLR 0 365 1 555 304 8 39 chr11 33015796 33016056 -117767497 - HERVFH21 LTR ERV1 -346 6183 5932 517 31 0 0 chr11 33016050 33016115 -117767438 - HERVFH21 LTR ERV1 -1815 4714 4650 * 6247 185 38 30 chr11 33016119 33017604 -117765949 - HERVFH21 LTR ERV1 -3744 2785 1290 1557 156 3 54 chr11 33017714 33018009 -117765544 + AluJb SINE Alu 17 296 -16 1722 125 45 0 chr11 33018303 33018590 -117764963 - L1PA16 LINE L1 -4 6162 5863 819 269 72 75 chr11 33018762 33019110 -117764443 + L2 LINE L2 2364 2712 -602 937 214 35 0 chr11 33019110 33019311 -117764242 + MER3 DNA MER1_type 2 209 0 819 269 72 75 chr11 33019311 33019445 -117764108 + L2 LINE L2 2712 2845 -469 830 313 79 34 chr11 33019614 33020115 -117763438 - L2 LINE L2 -24 3289 2765 21 0 0 0 chr11 33020115 33020136 -117763417 + AT_rich Low_complexity Low_complexity 1 21 0 228 371 89 5 chr11 33020162 33020364 -117763189 - L2 LINE L2 -1833 1481 1263 189 293 114 49 chr11 33020417 33020540 -117763013 - L2 LINE L2 -2190 1124 994 212 322 28 79 chr11 33020674 33020888 -117762665 - L2 LINE L2 -2654 660 458 292 204 0 97 chr11 33021277 33021370 -117762183 - MER103 DNA DNA -9 157 74 391 211 30 45 chr11 33021521 33021654 -117761899 + HAL1b LINE L1 1200 1330 -18 2136 105 24 7 chr11 33021660 33021954 -117761599 - AluSx SINE Alu -13 299 1 25 31 0 0 chr11 33022081 33022113 -117761440 + AT_rich Low_complexity Low_complexity 1 32 0 2858 213 230 23 chr11 33022156 33023156 -117760397 + L1MC4 LINE L1 6749 8037 -5 184 232 36 36 chr11 33023345 33023401 -117760152 + MIR SINE MIR 206 261 -1 367 285 87 35 chr11 33023862 33024034 -117759519 - MIR SINE MIR -1 261 81 3923 178 62 56 chr11 33024045 33025546 -117758007 + L1MB2 LINE L1 4662 6171 0 3191 182 44 40 chr11 33025693 33026166 -117757387 + L1MB8 LINE L1 5423 5902 -276 1097 218 17 114 chr11 33026166 33026570 -117756983 - MLT1A1 LTR MaLR 0 365 1 3191 182 44 40 chr11 33026570 33026849 -117756704 + L1MB8 LINE L1 5902 6178 0 1091 281 92 16 chr11 33026852 33027275 -117756278 - L2 LINE L2 -1378 1936 1482 1529 194 26 80 chr11 33027302 33027607 -117755946 - MLT1A1 LTR MaLR 0 365 84 1469 106 23 0 chr11 33027607 33027824 -117755729 - L1PA13 LINE L1 0 6163 5942 1529 194 26 80 chr11 33027824 33027904 -117755649 - MLT1A1 LTR MaLR -281 84 1 1722 254 183 29 chr11 33027904 33028621 -117754932 - L2 LINE L2 -1866 1448 622 433 301 6 64 chr11 33029354 33029527 -117754026 - MIR3 SINE MIR -1 207 45 364 325 12 31 chr11 33029822 33029982 -117753571 + MIR SINE MIR 20 176 -86 243 0 0 0 chr11 33031297 33031324 -117752229 + (TA)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr11 33031535 33031564 -117751989 + AT_rich Low_complexity Low_complexity 1 29 0 3590 155 29 7 chr11 33031667 33032138 -117751415 + L1MA8 LINE L1 5164 5657 -634 5528 142 124 9 chr11 33032138 33033242 -117750311 - Tigger3b DNA MER2_type 0 1231 1 3590 155 29 7 chr11 33033242 33033510 -117750043 + L1MA8 LINE L1 5657 5918 -373 21 0 0 0 chr11 33034567 33034588 -117748965 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 33035150 33035171 -117748382 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr11 33036370 33036407 -117747146 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr11 33037350 33037371 -117746182 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr11 33038164 33038190 -117745363 + AT_rich Low_complexity Low_complexity 1 26 0 2043 131 7 0 chr11 33038268 33038566 -117744987 - AluSx SINE Alu -12 300 1 1602 203 3 16 chr11 33038595 33038911 -117744642 + AluJo SINE Alu 1 312 0 604 165 110 0 chr11 33040380 33040556 -117742997 - L1M3 LINE L1 -717 5453 5255 494 216 108 16 chr11 33040566 33040760 -117742793 - L1M3 LINE L1 -921 5225 5014 182 288 17 17 chr11 33041029 33041088 -117742465 + L2 LINE L2 3214 3272 0 682 175 50 0 chr11 33041244 33041364 -117742189 + FLAM_C SINE Alu 1 126 -17 191 152 22 0 chr11 33041693 33041739 -117741814 + (CTA)n Simple_repeat Simple_repeat 1 47 0 249 292 52 21 chr11 33041740 33041836 -117741717 - MIR SINE MIR -26 236 138 247 341 92 17 chr11 33041927 33042100 -117741453 - MIR SINE MIR -76 186 1 524 254 270 11 chr11 33043236 33043425 -117740128 - MIR SINE MIR -22 240 3 402 197 231 14 chr11 33043527 33043674 -117739879 + MIR SINE MIR 76 254 -8 379 216 0 40 chr11 33044047 33044121 -117739432 - L2 LINE L2 -43 3270 3200 21 0 0 0 chr11 33044312 33044333 -117739220 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 33045382 33045410 -117738143 + AT_rich Low_complexity Low_complexity 1 28 0 28 61 0 0 chr11 33048168 33048217 -117735336 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr11 33050710 33050735 -117732818 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr11 33051851 33051883 -117731670 + AT_rich Low_complexity Low_complexity 1 32 0 189 326 23 23 chr11 33056529 33056615 -117726938 - L3 LINE CR1 -533 1044 959 31 44 0 0 chr11 33056661 33056706 -117726847 + AT_rich Low_complexity Low_complexity 1 45 0 235 136 85 0 chr11 33058202 33058261 -117725292 + T-rich Low_complexity Low_complexity 6 69 0 21 0 0 0 chr11 33060540 33060561 -117722992 + AT_rich Low_complexity Low_complexity 1 21 0 208 304 36 0 chr11 33061373 33061429 -117722124 - L2 LINE L2 0 3272 3215 23 68 0 0 chr11 33062001 33062045 -117721508 + AT_rich Low_complexity Low_complexity 1 44 0 552 289 176 47 chr11 33065106 33065469 -117718084 + L2 LINE L2 2896 3305 -8 398 277 97 63 chr11 33065521 33065727 -117717826 - MIR SINE MIR -10 252 40 29 0 0 0 chr11 33065776 33065805 -117717748 + AT_rich Low_complexity Low_complexity 1 29 0 651 303 58 33 chr11 33065807 33066048 -117717505 - MIR SINE MIR -14 248 2 24 53 0 0 chr11 33066998 33067036 -117716517 + AT_rich Low_complexity Low_complexity 1 38 0 2078 121 0 14 chr11 33067645 33067935 -117715618 + AluSx SINE Alu 7 292 -20 21 71 0 0 chr11 33068010 33068052 -117715501 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr11 33068983 33069012 -117714541 + AT_rich Low_complexity Low_complexity 1 29 0 268 313 24 0 chr11 33069474 33069557 -117713996 + L2 LINE L2 3188 3272 0 348 240 176 0 chr11 33070339 33070378 -117713175 + MER58A DNA MER1_type 5 36 -305 198 0 0 0 chr11 33070378 33070400 -117713153 + (TTG)n Simple_repeat Simple_repeat 2 23 0 348 240 176 0 chr11 33070400 33070485 -117713068 + MER58A DNA MER1_type 36 151 -73 225 301 321 5 chr11 33070771 33070980 -117712573 - L3 LINE CR1 -7 1570 1296 26 82 0 0 chr11 33071049 33071110 -117712443 + AT_rich Low_complexity Low_complexity 1 61 0 22 0 0 0 chr11 33071835 33071857 -117711696 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr11 33072433 33072462 -117711091 + AT_rich Low_complexity Low_complexity 1 29 0 189 74 0 0 chr11 33073271 33073298 -117710255 + (TC)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr11 33073547 33073569 -117709984 + AT_rich Low_complexity Low_complexity 1 22 0 2005 134 20 0 chr11 33073588 33073886 -117709667 - AluJb SINE Alu -8 304 1 2069 147 0 0 chr11 33073933 33074240 -117709313 - AluSx SINE Alu -5 307 1 2363 81 0 3 chr11 33074343 33074640 -117708913 + AluSc SINE Alu 1 296 -13 809 147 0 37 chr11 33076415 33076551 -117707002 - FLAM_A SINE Alu -2 131 1 603 0 0 0 chr11 33076603 33076670 -117706883 + (TG)n Simple_repeat Simple_repeat 2 68 0 476 329 57 84 chr11 33076908 33077040 -117706513 + L2 LINE L2 2811 2945 -327 2102 72 59 3 chr11 33077040 33077330 -117706223 - AluSc SINE Alu -3 306 1 476 329 57 84 chr11 33077330 33077671 -117705882 + L2 LINE L2 2945 3271 -1 39 50 0 0 chr11 33078709 33078769 -117704784 + AT_rich Low_complexity Low_complexity 1 60 0 1976 148 10 7 chr11 33080457 33080762 -117702791 + AluJb SINE Alu 1 306 -6 2217 98 3 0 chr11 33080957 33081253 -117702300 - AluSx SINE Alu -3 309 13 1741 160 11 3 chr11 33081261 33081578 -117701975 - AluJo SINE Alu 0 319 1 2409 58 14 0 chr11 33083218 33083510 -117700043 - AluSp SINE Alu -17 296 1 1558 247 136 17 chr11 33083752 33084486 -117699067 + L2 LINE L2 2486 3293 -20 328 306 243 0 chr11 33084618 33084791 -117698762 - MIR SINE MIR -27 235 21 499 138 17 60 chr11 33084866 33084982 -117698571 - Charlie2a DNA MER1_type -42 2820 2710 455 201 243 0 chr11 33084964 33085108 -117698445 - Charlie2a DNA MER1_type -1199 1663 1485 * 269 184 184 71 chr11 33085142 33085240 -117698313 - Charlie2b DNA MER1_type -2114 668 560 * 820 262 71 12 chr11 33085229 33085481 -117698072 - Charlie2b DNA MER1_type -2515 267 1 4977 166 25 73 chr11 33085640 33086114 -117697439 - L1MC1 LINE L1 -6 6607 6112 1656 183 0 14 chr11 33086114 33086404 -117697149 + AluJb SINE Alu 1 286 -26 4977 166 25 73 chr11 33086404 33086441 -117697112 - L1MC1 LINE L1 -501 6112 6075 366 80 0 0 chr11 33086441 33086491 -117697062 + (TG)n Simple_repeat Simple_repeat 1 50 0 4977 166 25 73 chr11 33086491 33087141 -117696412 - L1MC1 LINE L1 -538 6075 5500 1005 212 28 24 chr11 33087218 33087271 -117696282 - L1MC1 LINE L1 -1370 5056 5005 2069 157 37 18 chr11 33087271 33087654 -117695899 - MLT1B LTR MaLR 0 390 1 1005 212 28 24 chr11 33087654 33087850 -117695703 - L1MC1 LINE L1 -1421 5005 4806 1556 203 24 18 chr11 33087853 33088193 -117695360 - L1MC1 LINE L1 -6080 346 5 23 0 0 0 chr11 33088830 33088853 -117694700 + AT_rich Low_complexity Low_complexity 1 23 0 2364 91 3 0 chr11 33089674 33089982 -117693571 - AluSq SINE Alu -4 309 1 250 345 106 62 chr11 33090562 33090788 -117692765 - L2 LINE L2 -32 3240 3005 22 70 0 0 chr11 33090964 33091007 -117692546 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr11 33091330 33091353 -117692200 + AT_rich Low_complexity Low_complexity 1 23 0 1953 140 0 0 chr11 33092170 33092448 -117691105 - AluSx SINE Alu -34 278 1 614 239 27 65 chr11 33092503 33092796 -117690757 + L1M4 LINE L1 4769 5050 -1096 2190 93 3 3 chr11 33093012 33093312 -117690241 + AluSc SINE Alu 1 300 -9 27 29 0 0 chr11 33093556 33093590 -117689963 + AT_rich Low_complexity Low_complexity 1 34 0 2185 95 3 7 chr11 33093592 33093888 -117689665 + AluSc SINE Alu 1 295 -14 23 68 0 0 chr11 33094073 33094117 -117689436 + AT_rich Low_complexity Low_complexity 1 44 0 592 330 208 14 chr11 33094419 33094540 -117689013 - L2 LINE L2 -498 2816 2720 1694 148 42 0 chr11 33094540 33094823 -117688730 + AluJb SINE Alu 1 295 -17 592 330 208 14 chr11 33094823 33094926 -117688627 - L2 LINE L2 -594 2720 2638 219 69 0 0 chr11 33094926 33094955 -117688598 + (CAT)n Simple_repeat Simple_repeat 2 30 0 592 330 208 14 chr11 33094955 33095296 -117688257 - L2 LINE L2 -676 2638 2140 310 243 61 155 chr11 33095306 33095668 -117687885 - L2 LINE L2 -1282 2032 1705 1266 207 67 11 chr11 33097120 33097405 -117686148 + AluJo SINE Alu 2 302 0 620 279 57 0 chr11 33097623 33097781 -117685772 + MIR SINE MIR 3 169 -93 183 100 0 0 chr11 33097781 33097811 -117685742 + (TGG)n Simple_repeat Simple_repeat 2 31 0 380 320 67 28 chr11 33097983 33098161 -117685392 - MIR SINE MIR -52 210 26 25 0 0 0 chr11 33098363 33098388 -117685165 + AT_rich Low_complexity Low_complexity 1 25 0 219 69 0 0 chr11 33098727 33098756 -117684797 + (T)n Simple_repeat Simple_repeat 1 29 0 374 275 56 155 chr11 33100649 33101023 -117682530 + L2 LINE L2 2935 3271 -1 21014 52 3 4 chr11 33101107 33104575 -117678978 - L1PA5 LINE L1 -8 6146 2685 4525 45 2 0 chr11 33104575 33105147 -117678406 + L1P LINE L1 1961 2533 -3613 206 308 87 29 chr11 33105166 33105270 -117678283 + MIR SINE MIR 69 178 -84 25 0 0 0 chr11 33105729 33105754 -117677799 + AT_rich Low_complexity Low_complexity 1 25 0 1961 138 3 0 chr11 33106361 33106651 -117676902 - AluSx SINE Alu -21 291 1 2405 257 67 49 chr11 33106965 33107900 -117675653 + L1MC4 LINE L1 6648 7599 -443 1044 194 38 101 chr11 33107923 33108288 -117675265 + L1MC4 LINE L1 7698 8039 -3 319 204 15 10 chr11 33108325 33108482 -117675071 - MER46C DNA MER2_type -142 196 1 184 100 50 0 chr11 33109640 33109680 -117673873 + (TA)n Simple_repeat Simple_repeat 2 43 0 948 160 21 0 chr11 33110098 33110291 -117673262 + FRAM SINE Alu 1 195 0 942 107 25 97 chr11 33110314 33110510 -117673043 + L1MB3 LINE L1 5991 6172 -11 401 284 29 0 chr11 33110702 33110804 -117672749 + MIR SINE MIR 72 176 -86 209 177 145 0 chr11 33110821 33110883 -117672670 + MIR SINE MIR 150 220 -42 21 0 0 0 chr11 33112019 33112040 -117671513 + AT_rich Low_complexity Low_complexity 1 21 0 2964 34 0 0 chr11 33112229 33112583 -117670970 + L1PA5 LINE L1 5801 6154 0 29 0 0 0 chr11 33112583 33112612 -117670941 + AT_rich Low_complexity Low_complexity 1 29 0 2225 92 7 0 chr11 33112666 33112958 -117670595 + AluSx SINE Alu 4 297 -15 1279 214 106 46 chr11 33113009 33113378 -117670175 - MSTD LTR MaLR 0 396 6 1229 163 50 14 chr11 33113772 33113993 -117669560 - AluJo SINE Alu -1 311 83 24 0 0 0 chr11 33113996 33114020 -117669533 + AT_rich Low_complexity Low_complexity 1 24 0 1229 144 26 18 chr11 33114051 33114280 -117669273 - L1MA5A LINE L1 -4 6293 6063 709 191 0 8 chr11 33114281 33114407 -117669146 + FLAM_C SINE Alu 1 125 -18 361 121 35 75 chr11 33114412 33114585 -117668968 + (TTTAA)n Simple_repeat Simple_repeat 5 170 0 3328 120 24 13 chr11 33114597 33115139 -117668414 - L1MA5A LINE L1 -219 6078 5531 1814 189 134 24 chr11 33115532 33115986 -117667567 - MLT1D LTR MaLR 0 505 2 629 299 39 34 chr11 33117504 33117711 -117665842 + MIR SINE MIR 47 254 -8 23 54 0 0 chr11 33117786 33117823 -117665730 + AT_rich Low_complexity Low_complexity 1 37 0 527 280 109 35 chr11 33117846 33118103 -117665450 + L2 LINE L2 3038 3313 0 2094 135 0 0 chr11 33118276 33118573 -117664980 + AluSx SINE Alu 1 297 -15 199 315 68 0 chr11 33118853 33118926 -117664627 - L2 LINE L2 -642 2672 2595 296 187 22 44 chr11 33121680 33121771 -117661782 - L1MC5 LINE L1 -29 7932 7844 1722 215 95 50 chr11 33122476 33122959 -117660594 - MLT1D LTR MaLR 0 505 1 318 270 70 43 chr11 33123225 33123410 -117660143 - MIR SINE MIR 0 262 73 217 353 92 17 chr11 33123465 33123584 -117659969 - L2 LINE L2 -6 3266 3139 479 241 241 10 chr11 33123595 33123794 -117659759 + MIR SINE MIR 6 250 -12 1683 177 7 3 chr11 33123943 33124246 -117659307 - AluJo SINE Alu 0 304 1 574 207 250 5 chr11 33124276 33124484 -117659069 + MIR SINE MIR 2 260 -2 208 367 117 8 chr11 33124623 33124743 -117658810 - L2 LINE L2 -7 3265 3133 1424 207 83 5 chr11 33125101 33125407 -117658146 + Charlie4a DNA MER1_type 17 362 -1599 2187 121 0 0 chr11 33125407 33125704 -117657849 + AluSg SINE Alu 1 297 -13 1424 207 83 5 chr11 33125704 33125793 -117657760 + Charlie4a DNA MER1_type 362 443 -65 354 256 33 0 chr11 33125809 33125899 -117657654 - L3 LINE CR1 -572 1005 913 723 134 0 0 chr11 33125918 33126030 -117657523 - FLAM_C SINE Alu -31 112 1 1490 266 85 39 chr11 33126320 33126910 -117656643 - MLT1G LTR MaLR 0 590 11 1881 140 23 13 chr11 33126912 33127219 -117656334 + AluJb SINE Alu 3 312 0 238 185 19 0 chr11 33127589 33127643 -117655910 + L1MB7 LINE L1 6130 6184 0 623 195 16 0 chr11 33130476 33130599 -117652954 - MER45C DNA AcHobo -7 946 822 405 39 0 0 chr11 33130599 33130650 -117652903 + (TC)n Simple_repeat Simple_repeat 2 52 0 2276 281 67 33 chr11 33130650 33131437 -117652116 - MER45C DNA AcHobo -105 848 35 649 216 164 0 chr11 33131508 33131679 -117651874 - MIR SINE MIR -32 230 32 204 270 0 0 chr11 33132023 33132060 -117651493 - MIR SINE MIR -111 97 61 226 222 0 0 chr11 33134634 33134679 -117648874 - MER103 DNA DNA -120 46 2 21 0 0 0 chr11 33134931 33134952 -117648601 + AT_rich Low_complexity Low_complexity 1 21 0 237 281 47 0 chr11 33135684 33135748 -117647805 - MIR SINE MIR -75 133 67 696 294 15 5 chr11 33137876 33138080 -117645473 + L1M3d LINE L1 414 619 -5684 1445 193 120 25 chr11 33138104 33138430 -117645123 - MLT1A1 LTR MaLR 0 365 9 487 317 116 48 chr11 33138433 33138831 -117644722 + L1M3d LINE L1 654 1078 -5225 4158 225 114 14 chr11 33138975 33139501 -117644052 + L1MB1 LINE L1 778 1250 -5132 306 0 0 0 chr11 33139501 33139535 -117644018 + (TG)n Simple_repeat Simple_repeat 2 35 0 4158 225 114 14 chr11 33139535 33141131 -117642422 + L1MB1 LINE L1 1250 3010 -3372 2190 120 0 3 chr11 33141131 33141440 -117642113 + AluSx SINE Alu 5 312 0 8256 182 17 21 chr11 33141440 33143326 -117640227 + L1MB1 LINE L1 3526 5403 -979 11120 35 5 1 chr11 33143326 33145428 -117638125 + L1PA4 LINE L1 4058 6168 0 4447 145 75 25 chr11 33145431 33146047 -117637506 + L1MB1 LINE L1 5394 5978 -426 1753 148 9 72 chr11 33146047 33146379 -117637174 + AluJo SINE Alu 1 311 -1 1562 191 0 23 chr11 33146385 33146689 -117636864 + AluJb SINE Alu 1 297 -15 4447 145 75 25 chr11 33146689 33147022 -117636531 + L1MB1 LINE L1 5982 6399 -5 44861 32 3 2 chr11 33148687 33154827 -117628726 + L1PA4 LINE L1 1 6147 -8 26 50 0 0 chr11 33154827 33154867 -117628686 + AT_rich Low_complexity Low_complexity 1 40 0 267 54 0 0 chr11 33154967 33155004 -117628549 + (TG)n Simple_repeat Simple_repeat 2 38 0 2330 107 0 0 chr11 33156177 33156476 -117627077 - AluSx SINE Alu -11 301 3 771 173 0 0 chr11 33156655 33156788 -117626765 + FLAM_C SINE Alu 1 133 0 2410 59 0 29 chr11 33157790 33158097 -117625456 - AluY SINE Alu -13 298 1 187 256 240 33 chr11 33158814 33158935 -117624618 - L3b LINE CR1 -55 1528 1383 181 364 26 0 chr11 33158948 33159025 -117624528 - L3b LINE CR1 -4 1579 1501 249 235 0 0 chr11 33159489 33159540 -117624013 + L2 LINE L2 3262 3312 -1 304 289 191 16 chr11 33159575 33159831 -117623722 + L2 LINE L2 2243 2543 -771 317 360 67 0 chr11 33159919 33160083 -117623470 + L1ME LINE L1 3599 3773 -2373 277 303 27 65 chr11 33160338 33160486 -117623067 + L1ME LINE L1 4036 4177 -1969 2621 46 0 0 chr11 33160486 33160789 -117622764 + AluY SINE Alu 1 303 -8 277 303 27 65 chr11 33160789 33160825 -117622728 + L1ME LINE L1 4177 4213 -1933 192 250 0 0 chr11 33160908 33160952 -117622601 + MIR SINE MIR 100 143 -119 607 281 84 34 chr11 33161103 33161341 -117622212 + L2 LINE L2 2712 2961 -353 487 286 50 44 chr11 33161341 33161638 -117621915 + L1ME LINE L1 5413 5711 -451 758 279 122 44 chr11 33162004 33162521 -117621032 + L2 LINE L2 2533 3086 -227 2212 106 0 3 chr11 33162522 33162814 -117620739 + AluSx SINE Alu 1 291 -21 2840 220 139 26 chr11 33162824 33163733 -117619820 + L1MC4a LINE L1 6642 7652 -156 220 250 0 0 chr11 33163777 33163833 -117619720 + L2 LINE L2 2459 2514 -800 433 278 169 75 chr11 33164064 33164413 -117619140 + L2 LINE L2 2594 2975 -339 241 215 92 0 chr11 33164547 33164612 -117618941 + L2 LINE L2 3242 3312 -1 1461 169 12 4 chr11 33166604 33166846 -117616707 - AluJb SINE Alu -14 298 55 2125 127 13 3 chr11 33167628 33167935 -117615618 - AluSx SINE Alu 0 312 3 1694 121 98 4 chr11 33169021 33169285 -117614268 + AluJo SINE Alu 8 296 -16 30 27 0 0 chr11 33170366 33170403 -117613150 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr11 33170638 33170668 -117612885 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr11 33174627 33174661 -117608892 + AT_rich Low_complexity Low_complexity 1 34 0 1126 125 83 6 chr11 33178578 33178746 -117604807 + AluJo SINE Alu 12 192 -120 262 304 0 0 chr11 33178763 33178832 -117604721 + GA-rich Low_complexity Low_complexity 3 71 0 620 271 77 106 chr11 33179344 33179631 -117603922 + L2 LINE L2 2705 2999 -314 2337 71 0 10 chr11 33179631 33179927 -117603626 + AluY SINE Alu 1 293 -18 620 271 77 106 chr11 33179927 33180046 -117603507 + L2 LINE L2 2999 3120 -193 1814 137 26 26 chr11 33180046 33180353 -117603200 - AluSx SINE Alu -5 307 1 620 271 77 106 chr11 33180353 33180527 -117603026 + L2 LINE L2 3120 3278 -35 537 304 83 20 chr11 33180561 33180765 -117602788 - MLT1J LTR MaLR -294 217 1 1732 154 25 0 chr11 33181835 33182114 -117601439 + AluJb SINE Alu 5 290 -22 717 287 31 12 chr11 33182741 33182999 -117600554 - MLT1J LTR MaLR -10 501 239 1733 275 145 31 chr11 33183001 33183490 -117600063 - MER115 DNA AcHobo -1 692 117 1569 191 0 53 chr11 33183490 33183618 -117599935 + AluJb SINE Alu 5 138 -174 2197 133 0 0 chr11 33183618 33183918 -117599635 + AluSg SINE Alu 1 300 -10 1569 191 0 53 chr11 33183918 33184109 -117599444 + AluJb SINE Alu 138 307 -5 1733 275 145 31 chr11 33184109 33184234 -117599319 - MER115 DNA AcHobo -576 117 8 622 321 25 8 chr11 33184241 33184481 -117599072 - MLT1J LTR MaLR -267 244 1 235 234 9 37 chr11 33184998 33185105 -117598448 + (TATAA)n Simple_repeat Simple_repeat 5 108 0 602 184 190 19 chr11 33185460 33185618 -117597935 + MLT1J LTR MaLR 15 199 -312 252 282 42 0 chr11 33185716 33185787 -117597766 + MLT1J LTR MaLR 389 462 -49 380 321 48 12 chr11 33186536 33186701 -117596852 - MIR SINE MIR -70 192 22 578 150 92 58 chr11 33186825 33186945 -117596608 - FLAM_C SINE Alu -18 125 2 180 0 0 0 chr11 33187778 33187798 -117595755 + (CAGC)n Simple_repeat Simple_repeat 1 20 0 2276 110 3 0 chr11 33189422 33189730 -117593823 - AluSc SINE Alu 0 309 1 26 50 0 0 chr11 33190077 33190117 -117593436 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr11 33191667 33191691 -117591862 + AT_rich Low_complexity Low_complexity 1 24 0 24 77 0 0 chr11 33194928 33194980 -117588573 + AT_rich Low_complexity Low_complexity 1 52 0 213 121 0 0 chr11 33197836 33197869 -117585684 + (T)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr11 33198031 33198054 -117585499 + (A)n Simple_repeat Simple_repeat 1 23 0 635 0 13 0 chr11 33202338 33202413 -117581140 + (CA)n Simple_repeat Simple_repeat 2 77 0 198 0 0 0 chr11 33205441 33205463 -117578090 + (A)n Simple_repeat Simple_repeat 1 22 0 282 29 0 0 chr11 33205917 33205952 -117577601 + (GA)n Simple_repeat Simple_repeat 1 35 0 229 341 0 0 chr11 33210453 33210541 -117573012 + G-rich Low_complexity Low_complexity 1 88 0 368 219 7 22 chr11 33210782 33210919 -117572634 + GA-rich Low_complexity Low_complexity 3 137 0 222 37 0 0 chr11 33211942 33211969 -117571584 + (TCTCC)n Simple_repeat Simple_repeat 5 31 0 22 80 0 0 chr11 33213072 33213122 -117570431 + GC_rich Low_complexity Low_complexity 1 50 0 201 133 0 0 chr11 33217348 33217378 -117566175 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 216 220 0 40 chr11 33218658 33218708 -117564845 + G-rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr11 33219657 33219681 -117563872 + GC_rich Low_complexity Low_complexity 1 24 0 351 0 0 0 chr11 33220236 33220275 -117563278 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr11 33221313 33221334 -117562219 + GC_rich Low_complexity Low_complexity 1 21 0 425 50 17 0 chr11 33222924 33222984 -117560569 + (TC)n Simple_repeat Simple_repeat 2 62 0 30 45 0 0 chr11 33225694 33225738 -117557815 + GC_rich Low_complexity Low_complexity 1 44 0 218 262 0 16 chr11 33226065 33226126 -117557427 + (GCCTG)n Simple_repeat Simple_repeat 5 64 0 306 148 0 0 chr11 33227311 33227365 -117556188 + (TGGGGG)n Simple_repeat Simple_repeat 6 59 0 320 0 25 0 chr11 33229542 33229582 -117553971 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 25 31 0 0 chr11 33235164 33235196 -117548357 + GC_rich Low_complexity Low_complexity 1 32 0 360 43 0 0 chr11 33236639 33236685 -117546868 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 1208 68 12 0 chr11 33236685 33236846 -117546707 - L1PA3 LINE L1 -24 6131 5969 216 0 0 0 chr11 33237647 33237671 -117545882 + (T)n Simple_repeat Simple_repeat 1 24 0 201 287 89 59 chr11 33238533 33238634 -117544919 + L3 LINE CR1 1367 1470 -107 24 0 0 0 chr11 33238743 33238767 -117544786 + AT_rich Low_complexity Low_complexity 1 24 0 188 325 0 36 chr11 33238938 33239021 -117544532 + MER5A DNA MER1_type 86 165 -24 300 234 8 109 chr11 33239164 33239292 -117544261 - MIR SINE MIR -88 174 60 1724 158 32 14 chr11 33239591 33239869 -117543684 - AluJb SINE Alu -29 283 1 570 274 75 53 chr11 33240009 33240367 -117543186 - MLT1J2 LTR MaLR 0 450 85 4502 261 187 20 chr11 33240454 33242501 -117541052 - L2 LINE L2 -680 2634 247 489 141 0 0 chr11 33242716 33242801 -117540752 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 234 62 0 0 chr11 33242801 33242833 -117540720 + (CA)n Simple_repeat Simple_repeat 1 32 0 747 266 101 19 chr11 33243146 33243506 -117540047 - L1MC/D LINE L1 -299 5822 5483 280 183 0 85 chr11 33243582 33243682 -117539871 + 7SK RNA RNA 32 124 -69 329 253 56 56 chr11 33244378 33244540 -117539013 - HAL1b LINE L1 0 1348 1187 364 292 0 26 chr11 33244633 33244746 -117538807 - L1MC/D LINE L1 -2010 5798 5689 281 83 0 0 chr11 33244808 33244844 -117538709 - tRNA-Gly-GGC tRNA tRNA -38 36 1 2398 90 0 3 chr11 33245066 33245376 -117538177 - AluSc SINE Alu 0 309 1 21 57 0 0 chr11 33245498 33245533 -117538020 + AT_rich Low_complexity Low_complexity 1 35 0 279 0 0 0 chr11 33246381 33246412 -117537141 + (CA)n Simple_repeat Simple_repeat 2 32 0 23 54 0 0 chr11 33246707 33246744 -117536809 + AT_rich Low_complexity Low_complexity 1 37 0 264 30 0 0 chr11 33246908 33246941 -117536612 + (CA)n Simple_repeat Simple_repeat 1 33 0 402 232 323 24 chr11 33246968 33247222 -117536331 - L1MC4a LINE L1 -1895 5913 5584 2251 102 0 0 chr11 33247579 33247863 -117535690 + AluSx SINE Alu 9 292 -20 269 163 0 0 chr11 33247865 33247914 -117535639 + MER116 DNA Mariner 15 63 -17 374 278 0 9 chr11 33248729 33248837 -117534716 - L1ME LINE L1 -298 5823 5717 624 11 11 23 chr11 33248893 33248980 -117534573 + (TTTC)n Simple_repeat Simple_repeat 2 87 0 1757 174 0 4 chr11 33248980 33249261 -117534292 - AluJb SINE Alu -32 280 1 2265 92 10 0 chr11 33250298 33250591 -117532962 - AluSg SINE Alu -14 296 1 509 300 131 31 chr11 33250699 33251192 -117532361 + L2 LINE L2 2729 3272 0 2518 206 55 12 chr11 33251258 33251825 -117531728 - L1MD3 LINE L1 -1 7994 7404 621 230 0 8 chr11 33251825 33251951 -117531602 - MLT1F1 LTR MaLR -442 125 1 534 210 24 24 chr11 33251957 33252081 -117531472 - L1MD3 LINE L1 -729 7266 7143 1985 153 7 10 chr11 33252145 33252453 -117531100 - AluJo SINE Alu -5 307 1 1476 138 37 0 chr11 33253790 33254058 -117529495 + L1MA8 LINE L1 6010 6287 -4 1934 138 29 0 chr11 33254139 33254442 -117529111 + AluSx SINE Alu 1 311 0 291 216 57 12 chr11 33254584 33254683 -117528870 - MIR SINE MIR -40 168 61 2331 105 3 0 chr11 33255335 33255629 -117527924 + AluSp SINE Alu 1 295 -18 467 248 168 0 chr11 33257741 33257878 -117525675 - MIR SINE MIR -56 206 47 388 178 0 69 chr11 33258032 33258133 -117525420 + LTR41 LTR ERVL 671 764 -9 194 320 64 0 chr11 33258192 33258270 -117525283 + MIR SINE MIR 52 134 -128 858 178 6 29 chr11 33258416 33258590 -117524963 + FRAM SINE Alu 1 170 -6 2019 126 10 7 chr11 33258776 33259078 -117524475 - AluSx SINE Alu -9 303 1 629 326 19 8 chr11 33259672 33259930 -117523623 + MIR SINE MIR 1 261 -1 534 129 89 0 chr11 33260091 33260192 -117523361 - L1MD3 LINE L1 0 7995 7886 184 261 284 11 chr11 33260799 33260887 -117522666 - MER5B DNA MER1_type 0 178 67 249 191 0 0 chr11 33260935 33260982 -117522571 - MER5B DNA MER1_type -131 47 1 25 0 0 0 chr11 33261288 33261313 -117522240 + AT_rich Low_complexity Low_complexity 1 25 0 367 270 85 69 chr11 33262649 33262699 -117520854 - MIR SINE MIR -54 208 160 1646 216 86 25 chr11 33262699 33262868 -117520685 + MLT1D LTR MaLR 1 158 -347 2246 117 3 0 chr11 33262868 33263167 -117520386 + AluSp SINE Alu 1 300 -13 1646 216 86 25 chr11 33263167 33263473 -117520080 + MLT1D LTR MaLR 158 505 0 367 270 85 69 chr11 33263473 33263611 -117519942 - MIR SINE MIR -102 160 17 2226 187 3 3 chr11 33263821 33264185 -117519368 + MLT1A1 LTR MaLR 1 364 -1 301 242 0 0 chr11 33265232 33265298 -117518255 + L2 LINE L2 3248 3313 0 1843 161 57 29 chr11 33265770 33266119 -117517434 + MLT1A1 LTR MaLR 1 359 -6 217 323 101 42 chr11 33266320 33266537 -117517016 + L2 LINE L2 2829 3058 -214 346 267 137 0 chr11 33266882 33267013 -117516540 + LTR67 LTR ERVL 408 556 -1 657 47 0 0 chr11 33267032 33267117 -117516436 + (TA)n Simple_repeat Simple_repeat 1 85 0 2301 103 0 0 chr11 33267117 33267408 -117516145 - AluSx SINE Alu -10 302 12 346 295 69 40 chr11 33268599 33268772 -117514781 - MER5B DNA MER1_type 0 178 1 361 205 8 4 chr11 33269970 33270107 -117513446 + MER53 DNA DNA 3 189 0 914 276 161 27 chr11 33270224 33270573 -117512980 + MLT1J LTR MaLR 4 417 -94 1825 143 58 36 chr11 33270573 33270936 -117512617 + THE1C LTR MaLR 5 375 0 914 276 161 27 chr11 33270936 33270995 -117512558 + MLT1J LTR MaLR 417 467 -44 1987 136 14 3 chr11 33271009 33271304 -117512249 - AluJb SINE Alu -14 298 1 353 296 40 45 chr11 33271520 33271696 -117511857 - MER5A DNA MER1_type -1 188 14 209 260 55 14 chr11 33272630 33272703 -117510850 - L2 LINE L2 -57 3256 3181 1751 145 21 18 chr11 33272789 33273071 -117510482 + AluJo SINE Alu 1 283 -29 372 285 107 19 chr11 33273330 33273600 -117509953 - L2 LINE L2 -415 2899 2606 218 69 0 69 chr11 33274304 33274362 -117509191 + (TA)n Simple_repeat Simple_repeat 1 54 0 208 214 0 0 chr11 33274550 33274592 -117508961 - MIR SINE MIR -151 111 70 2047 222 110 42 chr11 33274953 33275317 -117508236 - MLT1G LTR MaLR 0 590 175 2002 131 3 3 chr11 33275317 33275607 -117507946 + AluSx SINE Alu 1 290 -22 2047 222 110 42 chr11 33275607 33275786 -117507767 - MLT1G LTR MaLR -415 175 10 264 266 118 70 chr11 33275962 33276191 -117507362 - HAL1b LINE L1 0 1348 1109 2122 128 16 3 chr11 33276257 33276563 -117506990 - AluSg SINE Alu 0 310 1 273 226 0 0 chr11 33276647 33276700 -117506853 - AluJo SINE Alu 0 308 256 1068 181 0 40 chr11 33276701 33276900 -117506653 - AluJo SINE Alu -116 196 6 416 234 84 84 chr11 33276908 33277135 -117506418 + MLT1L LTR MaLR 41 267 -348 376 67 217 0 chr11 33277185 33277245 -117506308 - MADE1 DNA Mariner 0 80 8 226 158 73 110 chr11 33277325 33277407 -117506146 + MLT1L LTR MaLR 533 611 -4 266 219 19 95 chr11 33277453 33277558 -117505995 - L1ME LINE L1 -320 5801 5705 407 298 185 0 chr11 33277750 33277955 -117505598 + MIR SINE MIR 20 262 0 1399 146 32 4 chr11 33278089 33278148 -117505405 - L1MD3 LINE L1 -10 7985 7929 2109 129 7 3 chr11 33278148 33278451 -117505102 + AluSx SINE Alu 1 304 -8 1399 146 32 4 chr11 33278451 33278637 -117504916 - L1MD3 LINE L1 -66 7929 7733 359 257 125 0 chr11 33278744 33278880 -117504673 - MIR SINE MIR -75 187 35 180 329 0 14 chr11 33279631 33279701 -117503852 - MIR SINE MIR -166 96 28 465 252 98 0 chr11 33280318 33280461 -117503092 - MIR SINE MIR -10 252 96 277 312 0 21 chr11 33280461 33280554 -117502999 + MER39 LTR ERV1 1 91 -616 354 235 0 0 chr11 33280556 33280637 -117502916 - MIR SINE MIR -170 92 12 295 320 56 8 chr11 33280980 33281105 -117502448 - L2 LINE L2 0 3272 3142 204 289 19 0 chr11 33281161 33281213 -117502340 + L2 LINE L2 3129 3181 -91 2242 105 23 0 chr11 33281431 33281735 -117501818 + AluSx SINE Alu 2 312 0 203 329 0 0 chr11 33281745 33281827 -117501726 - L2 LINE L2 -295 2977 2896 446 305 119 11 chr11 33282078 33282255 -117501298 - MIR SINE MIR -47 215 20 206 211 44 105 chr11 33282308 33282422 -117501131 - MIR SINE MIR -50 212 106 443 296 136 10 chr11 33283242 33283448 -117500105 - MIR SINE MIR -16 246 15 806 172 106 50 chr11 33283562 33283760 -117499793 + MER3 DNA MER1_type 1 209 0 195 42 0 0 chr11 33284445 33284469 -117499084 + (CTG)n Simple_repeat Simple_repeat 2 25 0 231 88 0 0 chr11 33284471 33284505 -117499048 + (TG)n Simple_repeat Simple_repeat 1 34 0 288 186 0 0 chr11 33284644 33284703 -117498850 + GA-rich Low_complexity Low_complexity 2 60 0 580 225 11 53 chr11 33284716 33284903 -117498650 - MIR SINE MIR 0 262 84 345 262 104 106 chr11 33285501 33286012 -117497541 - L1ME4a LINE L1 -15 6106 5597 665 244 76 36 chr11 33286257 33286496 -117497057 + MIR SINE MIR 8 260 -2 299 255 0 49 chr11 33286839 33286941 -117496612 - MIR SINE MIR -129 133 37 825 154 171 6 chr11 33287012 33287187 -117496366 + MER3 DNA MER1_type 2 205 -4 2122 127 0 3 chr11 33287244 33287543 -117496010 - AluSg SINE Alu -12 298 1 21 36 0 0 chr11 33287572 33287600 -117495953 + AT_rich Low_complexity Low_complexity 1 28 0 297 0 0 0 chr11 33287644 33287677 -117495876 + (TAA)n Simple_repeat Simple_repeat 2 34 0 256 326 36 88 chr11 33287986 33288179 -117495374 + L3 LINE CR1 1378 1560 -17 196 362 67 9 chr11 33288261 33288366 -117495187 + L2 LINE L2 3151 3261 -11 379 293 77 17 chr11 33288553 33288734 -117494819 - MIR SINE MIR -6 256 65 204 40 0 0 chr11 33289035 33289060 -117494493 + (TC)n Simple_repeat Simple_repeat 2 26 0 2370 89 0 10 chr11 33289060 33289362 -117494191 - AluY SINE Alu -12 299 1 529 272 113 5 chr11 33289459 33289654 -117493899 - MLT1K LTR MaLR 0 588 373 612 256 101 12 chr11 33289729 33289897 -117493656 - MER119 DNA MER1_type -396 187 5 366 328 37 0 chr11 33289990 33290124 -117493429 + MIR SINE MIR 53 191 -71 1449 225 95 27 chr11 33290244 33290688 -117492865 - MLT1J LTR MaLR 0 511 38 1509 199 24 0 chr11 33291398 33291694 -117491859 + L1MC1 LINE L1 6009 6311 -22 808 175 18 30 chr11 33292150 33292316 -117491237 + MER3 DNA MER1_type 6 122 -87 374 184 26 0 chr11 33292330 33292406 -117491147 + MER3 DNA MER1_type 128 205 -4 263 258 0 16 chr11 33292368 33292430 -117491123 - MER3 DNA MER1_type -120 89 29 * 27 0 0 0 chr11 33292994 33293021 -117490532 + AT_rich Low_complexity Low_complexity 1 27 0 491 241 53 0 chr11 33293122 33293255 -117490298 + MER103 DNA DNA 8 147 -19 1684 134 18 33 chr11 33294368 33294643 -117488910 + MER1B DNA MER1_type 1 271 -68 1898 114 0 0 chr11 33295363 33295618 -117487935 + AluSc SINE Alu 50 304 -5 255 296 34 62 chr11 33295712 33295888 -117487665 - MIR SINE MIR -72 190 20 284 327 7 47 chr11 33295929 33296079 -117487474 + MIR SINE MIR 59 202 -60 1012 230 18 51 chr11 33296862 33297161 -117486392 - L1MD3 LINE L1 0 8037 7768 995 227 4 48 chr11 33297182 33297244 -117486309 - MER58A DNA MER1_type -2196 224 161 1491 113 45 5 chr11 33297244 33297465 -117486088 + MER30 DNA MER1_type 1 230 0 995 227 4 48 chr11 33297465 33297631 -117485922 - MER58A DNA MER1_type -2259 161 6 916 201 19 48 chr11 33297643 33297664 -117485889 - L1MC4 LINE L1 -455 7587 7567 1591 147 34 101 chr11 33297664 33297828 -117485725 - AluJo SINE Alu -7 305 132 1880 133 13 47 chr11 33297828 33298145 -117485408 - AluSx SINE Alu -6 306 1 1591 147 34 101 chr11 33298145 33298189 -117485364 - AluJo SINE Alu -180 132 87 212 0 36 0 chr11 33298189 33298217 -117485336 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2226 70 0 21 chr11 33298222 33298506 -117485047 - AluY SINE Alu -33 278 1 1591 147 34 101 chr11 33298506 33298617 -117484936 - AluJo SINE Alu -229 83 1 916 201 19 48 chr11 33298617 33298804 -117484749 - L1MC4 LINE L1 -475 7567 7385 274 293 32 38 chr11 33298991 33299148 -117484405 - MIR SINE MIR 0 262 107 299 275 12 0 chr11 33299156 33299236 -117484317 + MLT1H LTR MaLR 16 96 -453 1485 218 48 73 chr11 33299246 33299783 -117483770 - MER39 LTR ERV1 0 707 1 683 281 28 51 chr11 33299786 33300039 -117483514 + MLT1H LTR MaLR 104 350 -199 408 219 31 31 chr11 33300038 33300134 -117483419 + MLT1H LTR MaLR 454 549 0 * 201 308 29 39 chr11 33300140 33300170 -117483383 - MIR SINE MIR -155 107 78 1925 108 71 31 chr11 33300170 33300495 -117483058 + MER44D DNA MER2_type 1 608 -1 201 308 29 39 chr11 33300495 33300568 -117482985 - MIR SINE MIR -184 78 5 422 307 153 5 chr11 33301265 33301480 -117482073 - MIR SINE MIR -3 259 13 2635 25 6 19 chr11 33303090 33303428 -117480125 - AluY SINE Alu 0 334 1 420 283 127 29 chr11 33304990 33305163 -117478390 + MIR SINE MIR 70 259 -3 496 285 21 38 chr11 33305327 33305513 -117478040 - MIR SINE MIR -74 188 6 1591 259 114 46 chr11 33306542 33306921 -117476632 + L2 LINE L2 2225 2577 -736 3445 52 5 23 chr11 33306921 33307364 -117476189 - L1PA7 LINE L1 0 6154 5720 1591 259 114 46 chr11 33307364 33307703 -117475850 + L2 LINE L2 2577 2892 -421 632 239 0 0 chr11 33307703 33307837 -117475716 - MER94 DNA DNA 0 134 1 1591 259 114 46 chr11 33307837 33308129 -117475424 + L2 LINE L2 2892 3306 -7 222 263 84 11 chr11 33309401 33309496 -117474057 + MIR3 SINE MIR 100 201 -7 2340 156 0 3 chr11 33309701 33310067 -117473486 - MLT1A1 LTR MaLR 0 365 1 483 296 92 5 chr11 33310215 33310411 -117473142 - MIR SINE MIR -20 242 30 216 0 0 0 chr11 33311051 33311075 -117472478 + (GTCTG)n Simple_repeat Simple_repeat 2 25 0 4019 136 36 39 chr11 33313369 33313995 -117469558 - L1MC1 LINE L1 -5 6328 5703 2281 98 0 0 chr11 33313995 33314281 -117469272 + AluSx SINE Alu 7 292 -20 4019 136 36 39 chr11 33314281 33314351 -117469202 - L1MC1 LINE L1 -630 5703 5634 1151 218 0 40 chr11 33314354 33314606 -117468947 - MSTD LTR MaLR 0 396 155 229 271 34 0 chr11 33314655 33314714 -117468839 + CT-rich Low_complexity Low_complexity 2 62 0 676 110 0 0 chr11 33314725 33314816 -117468737 - AluSq/x SINE Alu -163 150 60 1347 186 71 14 chr11 33314845 33315025 -117468528 - AluJo SINE Alu 0 312 107 456 19 0 0 chr11 33315025 33315078 -117468475 + (TG)n Simple_repeat Simple_repeat 2 54 0 1347 186 71 14 chr11 33315078 33315192 -117468361 - AluJo SINE Alu -205 107 1 1734 123 0 0 chr11 33315284 33315512 -117468041 + AluSx SINE Alu 1 228 -84 696 199 74 7 chr11 33315517 33315668 -117467885 - MLT1A2 LTR MaLR -229 161 1 2461 212 83 74 chr11 33315669 33316100 -117467453 - L1MC5 LINE L1 -435 7526 7100 17373 35 1 0 chr11 33316100 33318918 -117464635 + L1PA4 LINE L1 3326 6152 -3 2461 212 83 74 chr11 33318918 33318934 -117464619 - L1MC5 LINE L1 -861 7100 7086 1476 205 25 21 chr11 33318934 33319217 -117464336 + AluJb SINE Alu 1 284 -28 1188 0 0 0 chr11 33319217 33319349 -117464204 + (GGAAA)n Simple_repeat Simple_repeat 3 134 0 2461 212 83 74 chr11 33319349 33319967 -117463586 - L1MC5 LINE L1 -874 7087 6430 5405 96 4 3 chr11 33321307 33322059 -117461494 - L1PA14 LINE L1 -3 6158 5406 864 272 85 35 chr11 33322349 33322691 -117460862 - MLT1I LTR MaLR -22 387 29 206 327 89 0 chr11 33323777 33323878 -117459675 - MIR SINE MIR -69 139 30 634 322 5 0 chr11 33324367 33324575 -117458978 + MIR SINE MIR 18 226 -36 2163 116 0 0 chr11 33324598 33324925 -117458628 - AluSx SINE Alu 0 327 1 319 317 19 0 chr11 33325068 33325172 -117458381 - MIR3 SINE MIR -15 193 88 1204 223 26 21 chr11 33325606 33326076 -117457477 - MLT1H1 LTR MaLR -2 553 30 519 288 38 6 chr11 33326522 33326682 -117456871 - MIR SINE MIR -29 233 69 1054 230 19 55 chr11 33326687 33327048 -117456505 - L2 LINE L2 -3 3310 2963 504 330 22 0 chr11 33327155 33327340 -117456213 - MER5A DNA MER1_type 0 189 1 246 250 28 14 chr11 33327578 33327650 -117455903 + MIR SINE MIR 47 119 -143 623 295 44 20 chr11 33328402 33328653 -117454900 - MIR SINE MIR 0 262 6 1793 163 14 7 chr11 33328837 33329132 -117454421 - AluJo SINE Alu -15 297 1 346 326 37 0 chr11 33330661 33330796 -117452757 + MIR SINE MIR 8 147 -115 223 276 138 11 chr11 33330866 33330953 -117452600 + MIR SINE MIR 150 247 -15 1801 163 0 3 chr11 33331070 33331424 -117452129 - AluJb SINE Alu 0 353 1 592 241 185 14 chr11 33332475 33332827 -117450726 - L1ME4a LINE L1 -4 6117 5706 363 247 11 0 chr11 33332998 33333087 -117450466 - L1ME4a LINE L1 -457 5664 5575 715 252 146 38 chr11 33333300 33333724 -117449829 - MLT1K LTR MaLR -4 472 3 234 160 11 213 chr11 33334016 33334110 -117449443 - L2 LINE L2 0 3313 3239 243 192 115 0 chr11 33334711 33334763 -117448790 - L2 LINE L2 -1 3312 3255 2041 141 46 32 chr11 33334818 33335188 -117448365 + THE1C LTR MaLR 1 375 0 621 249 46 5 chr11 33335371 33335568 -117447985 + MIR SINE MIR 46 250 -12 312 291 94 71 chr11 33335665 33336047 -117447506 - L2 LINE L2 0 3313 2923 268 277 24 12 chr11 33336111 33336194 -117447359 + MER117 DNA MER1_type 114 197 0 2483 70 0 7 chr11 33336404 33336705 -117446848 + AluSq SINE Alu 1 299 -14 2317 96 0 16 chr11 33337697 33338000 -117445553 + AluSq SINE Alu 1 298 -15 342 0 0 0 chr11 33338380 33338418 -117445135 + (CA)n Simple_repeat Simple_repeat 2 39 0 1288 171 24 20 chr11 33338579 33338825 -117444728 - L1PA16 LINE L1 -1 6165 5919 219 152 0 0 chr11 33338825 33338871 -117444682 + CT-rich Low_complexity Low_complexity 2 47 0 1183 181 0 14 chr11 33339503 33339713 -117443840 + MER3 DNA MER1_type 3 209 0 467 319 46 17 chr11 33339914 33340152 -117443401 + MIR SINE MIR 8 252 -10 235 270 0 54 chr11 33340167 33340241 -117443312 - L2 LINE L2 0 3272 3203 423 188 12 0 chr11 33341219 33341299 -117442254 - MIR3 SINE MIR -3 205 125 477 323 67 53 chr11 33341523 33341808 -117441745 + L2 LINE L2 2979 3267 -5 819 134 37 22 chr11 33342050 33342184 -117441369 + AluJb SINE Alu 1 136 -176 271 350 42 0 chr11 33342388 33342508 -117441045 - MIR3 SINE MIR -14 194 70 2054 133 0 0 chr11 33343311 33343596 -117439957 - AluSx SINE Alu -21 291 7 256 306 99 25 chr11 33343627 33343748 -117439805 - L2 LINE L2 -5 3267 3138 280 269 154 23 chr11 33344317 33344447 -117439106 - MIR SINE MIR -44 218 72 1553 263 79 8 chr11 33344753 33345393 -117438160 - L1ME3A LINE L1 -219 5951 5249 1943 181 13 16 chr11 33345393 33345769 -117437784 - THE1C LTR MaLR 0 375 1 1553 263 79 8 chr11 33345769 33345836 -117437717 - L1ME3A LINE L1 -921 5249 5188 1074 140 55 0 chr11 33345843 33346007 -117437546 - AluSg/x SINE Alu -8 304 132 2239 117 0 0 chr11 33346057 33346356 -117437197 + AluSq SINE Alu 1 299 -14 439 223 124 0 chr11 33346366 33346487 -117437066 - L1MC4 LINE L1 -16 8026 7891 * 1249 270 80 50 chr11 33346468 33347205 -117436348 - L1ME3A LINE L1 -1736 4410 3652 730 285 179 40 chr11 33347239 33347709 -117435844 - MLT1G LTR MaLR 0 590 56 289 196 139 12 chr11 33347717 33347821 -117435732 - AluJ/FLAM SINE Alu -206 96 54 253 262 16 0 chr11 33347822 33347883 -117435670 - MLT1G LTR MaLR -505 62 1 516 303 9 14 chr11 33347888 33348106 -117435447 - L1ME3A LINE L1 -2498 3648 3432 1697 226 34 18 chr11 33348121 33348501 -117435052 - MER70B LTR ERVL -192 386 1 242 302 93 0 chr11 33348547 33348633 -117434920 + L2 LINE L2 3142 3235 -37 296 280 76 15 chr11 33348701 33348833 -117434720 - L2 LINE L2 -207 3065 2926 2588 118 3 3 chr11 33348862 33349226 -117434327 - THE1B LTR MaLR 0 364 1 354 176 0 40 chr11 33349241 33349315 -117434238 + L2 LINE L2 3202 3272 0 2879 184 5 43 chr11 33349385 33349840 -117433713 - MER74A LTR ERVL 0 558 128 2435 81 0 0 chr11 33349840 33350135 -117433418 - AluSg SINE Alu -15 295 1 2879 184 5 43 chr11 33350135 33350256 -117433297 - MER74A LTR ERVL -430 128 4 314 261 0 0 chr11 33350395 33350460 -117433093 - L2 LINE L2 0 3272 3208 415 250 100 0 chr11 33351414 33351554 -117431999 - MIR SINE MIR -6 256 103 574 158 10 0 chr11 33352222 33352354 -117431199 + AluY SINE Alu 183 315 0 1698 255 31 31 chr11 33352590 33353077 -117430476 + MLT1J LTR MaLR 3 489 -22 2434 77 3 0 chr11 33353111 33353409 -117430144 - AluY SINE Alu -12 299 1 240 234 78 13 chr11 33353631 33353708 -117429845 + MIR SINE MIR 71 152 -110 705 211 25 6 chr11 33353775 33353936 -117429617 + MIR3 SINE MIR 37 200 -8 765 245 0 69 chr11 33353988 33354204 -117429349 - MER63A DNA MER1_type -8 202 2 397 229 48 0 chr11 33354827 33354932 -117428621 + MER103 DNA DNA 6 115 -51 15513 189 23 17 chr11 33355148 33360603 -117422950 + L1P5 LINE L1 735 6494 -373 244 109 43 0 chr11 33360603 33360649 -117422904 + LTR66 LTR ERVL 392 439 -171 280 281 0 0 chr11 33360665 33360754 -117422799 + L1MC4 LINE L1 6614 6702 -1340 2358 135 0 11 chr11 33360757 33361120 -117422433 + L1PB1 LINE L1 5783 6141 -10 384 296 0 40 chr11 33361127 33361279 -117422274 + L1ME LINE L1 5474 5619 -545 246 296 56 37 chr11 33361284 33361392 -117422161 - MER5C DNA MER1_type -214 110 1 1671 138 72 75 chr11 33362602 33362978 -117420575 + THE1C LTR MaLR 1 375 0 297 267 114 0 chr11 33363285 33363390 -117420163 - MER91C DNA MER1_type 0 140 24 394 255 21 52 chr11 33363881 33364073 -117419480 - L2 LINE L2 -257 3056 2871 221 30 61 0 chr11 33365171 33365204 -117418349 + A-rich Low_complexity Low_complexity 1 35 0 479 259 46 17 chr11 33365240 33365414 -117418139 - MIR SINE MIR -58 204 26 258 261 110 4 chr11 33365496 33365608 -117417945 + MIR3 SINE MIR 62 187 -21 1055 240 29 0 chr11 33366521 33366767 -117416786 + MIR SINE MIR 10 262 0 298 267 133 12 chr11 33368133 33368310 -117415243 + MIR SINE MIR 43 250 -12 266 248 248 37 chr11 33368612 33368773 -117414780 + MIR SINE MIR 51 245 -17 1992 204 60 24 chr11 33369038 33369504 -117414049 - MLT1D LTR MaLR 0 505 23 4170 160 21 4 chr11 33370404 33371117 -117412436 - L1MB2 LINE L1 0 6171 5447 531 290 27 21 chr11 33371278 33371464 -117412089 - L1MC4a LINE L1 -1894 5914 5728 858 276 14 5 chr11 33371495 33371712 -117411841 + MIR SINE MIR 1 219 -43 266 204 51 41 chr11 33371750 33371809 -117411744 - L1MC4a LINE L1 -422 5699 5637 485 146 19 39 chr11 33371809 33371912 -117411641 - L1PA12 LINE L1 0 6168 6068 266 204 51 41 chr11 33371912 33371950 -117411603 - L1MC4a LINE L1 -484 5637 5601 454 271 162 32 chr11 33372566 33372850 -117410703 - L1ME4a LINE L1 -4 6117 5797 248 234 160 21 chr11 33372918 33373012 -117410541 + MIR3 SINE MIR 9 115 -93 2295 87 0 0 chr11 33373075 33373361 -117410192 + AluSx SINE Alu 20 305 -7 251 225 207 18 chr11 33373819 33373930 -117409623 + MIR3 SINE MIR 39 170 -38 182 304 14 14 chr11 33373937 33374006 -117409547 - L2 LINE L2 0 3272 3204 339 78 56 49 chr11 33374075 33374217 -117409336 + (TATAA)n Simple_repeat Simple_repeat 2 144 0 650 266 25 30 chr11 33374221 33374424 -117409129 - MIR SINE MIR -49 213 12 595 288 111 4 chr11 33374471 33374697 -117408856 - MIR SINE MIR -12 250 1 287 321 15 0 chr11 33375224 33375355 -117408198 + (TGAA)n Simple_repeat Simple_repeat 3 135 0 447 316 109 0 chr11 33377870 33378063 -117405490 - MIR SINE MIR -34 228 15 264 319 86 0 chr11 33378097 33378213 -117405340 - MIR3 SINE MIR -19 189 64 311 217 59 86 chr11 33378591 33378743 -117404810 + MIR3 SINE MIR 7 154 -54 5040 47 8 13 chr11 33378963 33379988 -117403565 - SVA Other Other -955 1386 1 204 97 0 0 chr11 33379989 33380020 -117403533 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 753 234 52 40 chr11 33380432 33380684 -117402869 - MIR SINE MIR 0 262 8 207 0 0 0 chr11 33381748 33381771 -117401782 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 614 206 29 7 chr11 33381792 33381928 -117401625 - L1ME1 LINE L1 -117 6049 5911 277 153 34 0 chr11 33381937 33381996 -117401557 - L1ME1 LINE L1 -855 5291 5231 426 257 198 21 chr11 33383125 33383463 -117400090 - L2 LINE L2 -756 2558 2161 728 186 0 41 chr11 33384034 33384179 -117399374 - MER20 DNA MER1_type -1 218 80 653 309 14 14 chr11 33384206 33384371 -117399182 + MIR SINE MIR 43 211 -51 1747 162 0 11 chr11 33384371 33384680 -117398873 + AluJb SINE Alu 1 306 0 653 309 14 14 chr11 33384680 33384733 -117398820 + MIR SINE MIR 210 262 0 711 68 0 29 chr11 33384837 33384940 -117398613 + L1PA8 LINE L1 6071 6170 -2 25 31 0 0 chr11 33385190 33385222 -117398331 + AT_rich Low_complexity Low_complexity 1 32 0 2287 117 3 0 chr11 33385632 33385941 -117397612 - AluSg SINE Alu 0 310 1 531 223 12 36 chr11 33386380 33386401 -117397152 - L1MA10 LINE L1 0 6334 6314 1510 211 42 29 chr11 33386401 33386622 -117396931 - L1ME2 LINE L1 -9 6155 5925 2343 84 7 0 chr11 33386622 33386918 -117396635 - AluSx SINE Alu -14 298 1 1510 211 42 29 chr11 33386918 33387104 -117396449 - L1ME2 LINE L1 -239 5925 5743 269 293 132 19 chr11 33387172 33387384 -117396169 - L1ME4a LINE L1 -38 6083 5848 3059 270 57 6 chr11 33387502 33388544 -117395009 - L2 LINE L2 -440 2874 1780 1734 173 22 31 chr11 33388620 33388979 -117394574 - MLT1A1 LTR MaLR 0 365 10 326 303 79 30 chr11 33389066 33389231 -117394322 + MIR3 SINE MIR 25 197 -11 283 272 48 40 chr11 33389581 33389706 -117393847 - MIR SINE MIR -63 145 20 906 265 101 45 chr11 33390175 33390511 -117393042 - MLT1H LTR MaLR -194 355 1 216 237 13 26 chr11 33392145 33392221 -117391332 + T-rich Low_complexity Low_complexity 5 79 0 2088 132 0 25 chr11 33392624 33392942 -117390611 - AluSx SINE Alu -2 310 1 728 244 18 0 chr11 33393501 33393669 -117389884 + MIR SINE MIR 43 213 -49 212 321 64 9 chr11 33393997 33394106 -117389447 + MIR SINE MIR 78 192 -70 221 105 26 0 chr11 33394160 33394198 -117389355 + L2 LINE L2 3267 3305 -8 351 96 0 0 chr11 33394624 33394676 -117388877 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 316 332 183 13 chr11 33394679 33394980 -117388573 - L2 LINE L2 -35 3237 2886 197 211 289 11 chr11 33395061 33395151 -117388402 + MIR SINE MIR 35 149 -113 24 106 0 0 chr11 33395440 33395534 -117388019 + GC_rich Low_complexity Low_complexity 1 94 0 657 250 41 49 chr11 33395674 33395918 -117387635 + MIR SINE MIR 21 262 0 433 260 49 16 chr11 33396444 33396567 -117386986 - L2 LINE L2 -13 3259 3133 248 273 112 48 chr11 33397061 33397248 -117386305 - L2 LINE L2 -1 3312 3114 361 294 145 8 chr11 33397459 33397721 -117385832 - L1ME4a LINE L1 -80 6041 5744 346 314 13 38 chr11 33398080 33398239 -117385314 + MIR SINE MIR 59 213 -49 442 295 155 0 chr11 33398276 33398476 -117385077 - MIR SINE MIR -30 232 2 273 287 16 82 chr11 33399382 33399504 -117384049 - L2 LINE L2 -4 3268 3155 627 214 29 0 chr11 33399680 33399820 -117383733 + MIR SINE MIR 18 161 -101 * 706 198 31 12 chr11 33399809 33399971 -117383582 - MIR SINE MIR 0 262 98 275 218 140 99 chr11 33400066 33400235 -117383318 + L1ME4a LINE L1 5866 6049 -72 1969 151 17 7 chr11 33400235 33400533 -117383020 - AluJb SINE Alu -11 301 1 275 218 140 99 chr11 33400533 33400606 -117382947 + L1ME4a LINE L1 6049 6118 -3 347 326 47 0 chr11 33401198 33401327 -117382226 + L2 LINE L2 3176 3310 -3 774 238 66 78 chr11 33401454 33401774 -117381779 - MER46C DNA MER2_type -21 317 2 416 295 115 11 chr11 33401822 33402005 -117381548 + MIR SINE MIR 58 259 -3 196 271 47 19 chr11 33402006 33402113 -117381440 - MIR SINE MIR -61 201 92 1690 174 18 0 chr11 33402118 33402393 -117381160 + AluJo SINE Alu 11 290 -22 1709 144 59 4 chr11 33402415 33402685 -117380868 + AluSg SINE Alu 10 294 -16 212 178 0 22 chr11 33403499 33403544 -117380009 + GA-rich Low_complexity Low_complexity 1 44 0 930 207 0 5 chr11 33403951 33404144 -117379409 - MER96B DNA MER1_type? -183 234 43 385 233 45 68 chr11 33404163 33404296 -117379257 - LTR16C LTR ERVL -236 255 126 373 132 13 53 chr11 33404482 33404558 -117378995 + MLT1K LTR MaLR 510 582 -6 2254 149 56 26 chr11 33404625 33405138 -117378415 - MLT2A2 LTR ERVL 0 554 1 248 260 87 10 chr11 33405583 33405687 -117377866 + L2 LINE L2 3161 3272 0 293 290 179 16 chr11 33405790 33405970 -117377583 - MIR SINE MIR -40 222 15 363 229 72 0 chr11 33407257 33407340 -117376213 + L2 LINE L2 3184 3272 0 22 0 0 0 chr11 33407353 33407375 -117376178 + AT_rich Low_complexity Low_complexity 1 22 0 1985 117 48 0 chr11 33407944 33408247 -117375306 - AluSg SINE Alu 0 316 1 1727 112 0 4 chr11 33408693 33408926 -117374627 + AluSg SINE Alu 1 232 -78 401 289 99 35 chr11 33409145 33409377 -117374176 + MIR SINE MIR 16 262 0 216 363 52 0 chr11 33409731 33409866 -117373687 + MIR SINE MIR 25 166 -96 607 289 172 18 chr11 33410504 33410836 -117372717 + L1ME4a LINE L1 5737 6119 -2 305 325 97 7 chr11 33411576 33411730 -117371823 - MIR3 SINE MIR -22 186 19 27 0 0 0 chr11 33411871 33411898 -117371655 + AT_rich Low_complexity Low_complexity 1 27 0 473 311 28 19 chr11 33411935 33412147 -117371406 + MIR SINE MIR 34 247 -15 202 204 259 0 chr11 33412248 33412302 -117371251 - L2 LINE L2 0 3272 3205 185 138 0 0 chr11 33413034 33413063 -117370490 - MIR3 SINE MIR -27 181 153 491 277 101 0 chr11 33413063 33413211 -117370342 + MER117 DNA MER1_type 1 163 -34 271 190 17 0 chr11 33413265 33413323 -117370230 - MIR SINE MIR -109 99 41 555 277 79 72 chr11 33413487 33414017 -117369536 - MLT1F LTR MaLR -7 535 2 219 69 0 0 chr11 33414613 33414642 -117368911 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 722 273 88 42 chr11 33415777 33416298 -117367255 + L1ME4a LINE L1 5573 6117 -4 291 218 0 0 chr11 33416469 33416524 -117367029 + L2 LINE L2 3218 3272 0 499 223 0 0 chr11 33417344 33417447 -117366106 + MIR SINE MIR 47 149 -113 335 309 91 6 chr11 33417576 33417741 -117365812 - MIR SINE MIR -70 192 14 368 310 13 39 chr11 33418708 33418810 -117364743 - MIR SINE MIR -1 261 163 2611 112 3 8 chr11 33418810 33419176 -117364377 - THE1B LTR MaLR 0 364 1 368 310 13 39 chr11 33419176 33419228 -117364325 - MIR SINE MIR -99 163 111 241 353 64 12 chr11 33419284 33419457 -117364096 - L2 LINE L2 -173 3099 2918 356 296 50 25 chr11 33419645 33419804 -117363749 - MIR SINE MIR -69 193 31 275 333 103 32 chr11 33420614 33420770 -117362783 + MER5B DNA MER1_type 11 177 -1 419 304 82 10 chr11 33420930 33421124 -117362429 + MIR SINE MIR 54 261 -1 198 0 0 0 chr11 33421140 33421162 -117362391 + (CA)n Simple_repeat Simple_repeat 2 23 0 279 122 0 0 chr11 33421162 33421211 -117362342 + (GA)n Simple_repeat Simple_repeat 1 49 0 288 200 120 30 chr11 33421211 33421311 -117362242 + L1ME4a LINE L1 5964 6072 -49 300 313 111 56 chr11 33422175 33422552 -117361001 - L2 LINE L2 -27 3245 2848 1251 227 74 72 chr11 33422589 33422828 -117360725 + MER113 DNA MER1_type? 6 243 -278 423 0 0 0 chr11 33422828 33422875 -117360678 + (CA)n Simple_repeat Simple_repeat 2 48 0 1251 227 74 72 chr11 33422875 33423147 -117360406 + MER113 DNA MER1_type? 243 518 -3 203 256 29 23 chr11 33424680 33424852 -117358701 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 23 54 0 0 chr11 33424863 33424900 -117358653 + AT_rich Low_complexity Low_complexity 1 37 0 653 272 55 5 chr11 33425518 33425735 -117357818 - MIR SINE MIR -1 261 34 180 0 0 0 chr11 33426067 33426087 -117357466 + (T)n Simple_repeat Simple_repeat 1 20 0 407 298 69 18 chr11 33426492 33426710 -117356843 + MLT1L LTR MaLR 147 375 -240 298 265 83 38 chr11 33426787 33426919 -117356634 + MLT1L LTR MaLR 477 614 -1 350 317 19 0 chr11 33427419 33427523 -117356030 + MLT1J1 LTR MaLR 69 174 -272 2976 33 41 0 chr11 33427619 33427981 -117355572 - L1PA4 LINE L1 -2 6153 5777 4023 28 2 0 chr11 33429150 33429654 -117353899 + L1PA3 LINE L1 5679 6183 0 1807 173 0 16 chr11 33430807 33431144 -117352409 + AluJo SINE Alu 1 312 0 331 254 35 77 chr11 33431145 33431314 -117352239 - MER103 DNA DNA -1 165 4 2165 128 3 6 chr11 33432463 33432775 -117350778 - AluSx SINE Alu -1 311 1 193 177 0 32 chr11 33432799 33432861 -117350692 + GA-rich Low_complexity Low_complexity 1 60 0 315 252 122 8 chr11 33433068 33433199 -117350354 + MLT1L LTR MaLR 133 278 -337 308 237 29 86 chr11 33433451 33433590 -117349963 + MIR SINE MIR 60 190 -72 2510 81 0 0 chr11 33433825 33434132 -117349421 + AluY SINE Alu 1 307 -4 191 374 44 33 chr11 33434310 33434401 -117349152 - L2 LINE L2 -40 3232 3141 198 0 0 0 chr11 33434675 33434697 -117348856 + (TG)n Simple_repeat Simple_repeat 1 22 0 234 314 57 29 chr11 33434724 33434864 -117348689 - L2 LINE L2 -456 2858 2715 206 200 20 40 chr11 33435647 33435697 -117347856 + L2 LINE L2 3034 3082 -190 606 304 20 10 chr11 33435797 33436001 -117347552 - MIR SINE MIR -56 206 1 186 103 0 0 chr11 33437315 33437344 -117346209 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1036 195 91 5 chr11 33437357 33437578 -117345975 - AluJo SINE Alu -72 240 1 435 52 0 0 chr11 33438697 33438755 -117344798 + (CA)n Simple_repeat Simple_repeat 1 58 0 533 229 11 87 chr11 33441174 33441357 -117342196 + MER21B LTR ERV1 681 849 -14 3187 140 61 23 chr11 33442525 33443060 -117340493 - L1MB8 LINE L1 -1 6177 5613 1681 161 29 63 chr11 33443060 33443438 -117340115 - MLT1A1 LTR MaLR 0 365 1 3187 140 61 23 chr11 33443438 33443522 -117340031 - L1MB8 LINE L1 -565 5613 5534 534 211 58 26 chr11 33443789 33443945 -117339608 + MER103 DNA DNA 2 162 -4 424 240 41 55 chr11 33444203 33444349 -117339204 - MIR SINE MIR -111 151 8 273 29 0 0 chr11 33444540 33444574 -117338979 + (CA)n Simple_repeat Simple_repeat 2 35 0 342 0 0 0 chr11 33444626 33444664 -117338889 + (T)n Simple_repeat Simple_repeat 1 38 0 911 189 0 0 chr11 33445036 33445239 -117338314 + FRAM SINE Alu 1 203 0 1879 148 27 13 chr11 33445870 33446168 -117337385 - AluJb SINE Alu -10 302 1 186 185 169 15 chr11 33446205 33446270 -117337283 + MIR3 SINE MIR 131 205 -3 533 265 115 52 chr11 33446565 33446931 -117336622 + MLT1K LTR MaLR 191 579 -9 186 71 0 0 chr11 33447477 33447505 -117336048 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 467 297 114 5 chr11 33447802 33448004 -117335549 + L2 LINE L2 2837 3060 -253 636 255 132 32 chr11 33448004 33448498 -117335055 - MLT1G LTR MaLR 0 595 1 422 276 115 46 chr11 33448516 33448733 -117334820 + L2 LINE L2 3074 3305 -8 416 204 41 0 chr11 33449879 33449977 -117333576 + L1ME LINE L1 5628 5729 -392 1508 121 0 39 chr11 33450024 33450256 -117333297 + AluSg/x SINE Alu 70 292 -18 1581 191 10 13 chr11 33450366 33450675 -117332878 + AluJo SINE Alu 5 312 0 1633 50 0 0 chr11 33450731 33450929 -117332624 + L1PA7 LINE L1 5949 6146 -8 1196 83 12 12 chr11 33451040 33451208 -117332345 - L1MA1 LINE L1 0 6302 6135 1033 217 191 31 chr11 33451654 33452004 -117331549 - MLT1J LTR MaLR -105 406 1 408 217 47 28 chr11 33453398 33453504 -117330049 - MER69 DNA AcHobo -1118 108 1 200 204 102 102 chr11 33453580 33453629 -117329924 + MIR SINE MIR 52 100 -162 1837 143 58 33 chr11 33453629 33453993 -117329560 - THE1C LTR MaLR 0 375 3 200 204 102 102 chr11 33453993 33454041 -117329512 + MIR SINE MIR 99 149 -113 486 301 68 51 chr11 33454048 33454160 -117329393 + MLT1J LTR MaLR 1 110 -336 1934 221 8 65 chr11 33454160 33454653 -117328900 - LTR40c LTR ERVL 0 465 1 486 301 68 51 chr11 33454653 33455004 -117328549 + MLT1J LTR MaLR 110 444 -2 245 75 25 0 chr11 33455320 33455360 -117328193 + (TC)n Simple_repeat Simple_repeat 2 42 0 292 245 30 73 chr11 33455480 33455652 -117327901 + MIR SINE MIR 38 201 -61 1075 162 22 0 chr11 33455727 33455912 -117327641 + MER5A DNA MER1_type 1 189 0 24 0 0 0 chr11 33455971 33455995 -117327558 + AT_rich Low_complexity Low_complexity 1 24 0 1053 284 100 20 chr11 33456231 33456640 -117326913 - MLT1K LTR MaLR -8 580 139 321 231 34 34 chr11 33456694 33456811 -117326742 + MLT1J LTR MaLR 394 510 -1 256 162 40 81 chr11 33456959 33456995 -117326558 + MIR SINE MIR 129 162 -100 1359 196 72 36 chr11 33456995 33457327 -117326226 - MER2 DNA MER2_type 0 344 1 256 162 40 81 chr11 33457327 33457364 -117326189 + MIR SINE MIR 162 199 -63 950 213 36 32 chr11 33458327 33458548 -117325005 + MER58A DNA MER1_type 3 224 0 508 199 81 44 chr11 33458938 33459074 -117324479 - Charlie8 DNA MER1_type -2151 266 126 949 98 7 7 chr11 33459195 33459348 -117324205 + (GGAA)n Simple_repeat Simple_repeat 3 155 0 251 203 14 0 chr11 33459683 33459757 -117323796 + GA-rich Low_complexity Low_complexity 1 75 0 743 268 81 7 chr11 33459878 33460162 -117323391 + L1ME4a LINE L1 5815 6119 -2 229 195 0 0 chr11 33461529 33461570 -117321983 + (CA)n Simple_repeat Simple_repeat 2 42 0 1968 180 41 21 chr11 33461602 33461990 -117321563 + MSTD LTR MaLR 1 396 0 454 328 44 16 chr11 33462046 33462296 -117321257 + MIR SINE MIR 3 259 -3 2200 124 0 0 chr11 33462828 33463126 -117320427 + AluSx SINE Alu 3 300 -12 574 103 0 0 chr11 33463461 33463539 -117320014 - AluS SINE Alu -232 80 3 344 217 78 83 chr11 33464171 33464304 -117319249 - MIR SINE MIR -67 141 24 286 221 29 0 chr11 33464371 33464439 -117319114 - MER96 DNA MER1_type? -24 151 82 300 247 129 73 chr11 33465327 33465505 -117318048 - MIR SINE MIR -55 207 20 201 222 141 40 chr11 33465562 33465661 -117317892 - MIR SINE MIR -75 187 79 280 313 16 16 chr11 33466031 33466159 -117317394 + LTR33 LTR ERVL 328 455 -66 571 253 62 34 chr11 33466245 33466443 -117317110 - LTR33 LTR ERVL 0 521 320 359 312 32 48 chr11 33466446 33466632 -117316921 - LTR33 LTR ERVL -332 189 7 1225 267 53 15 chr11 33466739 33467132 -117316421 + L1MC4 LINE L1 7190 7597 -445 1079 259 16 8 chr11 33467133 33467418 -117316135 + L1ME3A LINE L1 5813 6103 -67 275 49 24 0 chr11 33467433 33467474 -117316079 + (TG)n Simple_repeat Simple_repeat 2 43 0 301 218 7 102 chr11 33467474 33467613 -117315940 + L1MC4 LINE L1 7916 8042 0 3399 97 11 40 chr11 33467998 33468298 -117315255 - L1PA13 LINE L1 -2 6161 5880 2226 98 0 14 chr11 33468298 33468627 -117314926 + AluSg SINE Alu 1 325 0 3399 97 11 40 chr11 33468627 33468849 -117314704 - L1PA13 LINE L1 -283 5880 5653 281 182 18 0 chr11 33469401 33469456 -117314097 + L2 LINE L2 3256 3311 -2 370 244 183 0 chr11 33469870 33470001 -117313552 - MIR SINE MIR -16 246 92 1199 223 54 113 chr11 33470003 33470375 -117313178 + MLT2B1 LTR ERVL 1 350 -64 605 170 35 6 chr11 33470379 33470550 -117313003 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 326 76 21 0 chr11 33470552 33470605 -117312948 + MLT2B1 LTR ERVL 400 520 0 795 236 110 80 chr11 33470795 33470857 -117312696 + MLT1L LTR MaLR 236 295 -320 2183 111 3 3 chr11 33470857 33471155 -117312398 + AluSc SINE Alu 2 299 -10 795 236 110 80 chr11 33471155 33471456 -117312097 + MLT1L LTR MaLR 295 610 -5 186 133 0 0 chr11 33471635 33471665 -117311888 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 978 290 24 10 chr11 33472663 33472953 -117310600 - MLT1I LTR MaLR 0 409 116 258 330 38 0 chr11 33474462 33474568 -117308985 - MIR SINE MIR -141 121 12 1305 90 58 0 chr11 33474569 33474757 -117308796 + MER30 DNA MER1_type 1 199 -31 363 291 103 8 chr11 33474835 33474952 -117308601 + MIR SINE MIR 22 149 -113 288 200 158 0 chr11 33475627 33475722 -117307831 + MIR SINE MIR 2 111 -151 1706 219 68 35 chr11 33475722 33476211 -117307342 + MLT1D LTR MaLR 1 505 0 214 273 117 0 chr11 33476444 33476521 -117307032 + MIR SINE MIR 57 142 -120 297 203 0 0 chr11 33476758 33476817 -117306736 - L2 LINE L2 -3 3310 3252 245 301 161 0 chr11 33476855 33476948 -117306605 - MER91A DNA MER1_type 0 196 89 231 88 0 0 chr11 33477834 33477868 -117305685 + (A)n Simple_repeat Simple_repeat 1 34 0 275 319 119 39 chr11 33477885 33478170 -117305383 - MLT1K LTR MaLR -67 521 214 607 272 48 28 chr11 33478352 33478686 -117304867 + LTR33 LTR ERVL 47 452 -69 737 208 157 20 chr11 33478704 33478901 -117304652 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr11 33479631 33479652 -117303901 + AT_rich Low_complexity Low_complexity 1 21 0 262 253 36 31 chr11 33480012 33480132 -117303421 + MIR SINE MIR 20 145 -63 254 243 207 18 chr11 33480176 33480287 -117303266 - L2 LINE L2 0 3272 3141 187 205 51 39 chr11 33480587 33480665 -117302888 - L2 LINE L2 -497 2817 2739 223 269 0 0 chr11 33480957 33481009 -117302544 + L2 LINE L2 3211 3262 -10 302 274 15 74 chr11 33482259 33482385 -117301168 + MER5A DNA MER1_type 1 120 -69 2441 73 7 0 chr11 33482385 33482685 -117300868 - AluSp SINE Alu -7 306 5 420 20 0 0 chr11 33483338 33483387 -117300166 + (TAA)n Simple_repeat Simple_repeat 1 49 0 415 148 10 40 chr11 33483428 33483529 -117300024 - L1MC5 LINE L1 -31 7930 7833 1956 151 7 3 chr11 33483549 33483854 -117299699 - AluSx SINE Alu -6 306 1 683 258 54 41 chr11 33483889 33484258 -117299295 - L1MC5 LINE L1 -233 7728 7355 268 313 94 39 chr11 33484347 33484580 -117298973 + L2 LINE L2 1706 1951 -1363 497 292 32 50 chr11 33484810 33485088 -117298465 - MLT1H1 LTR MaLR -273 282 11 363 283 122 69 chr11 33485135 33485617 -117297936 + L2 LINE L2 1984 2504 -810 207 0 0 0 chr11 33485617 33485640 -117297913 + (TC)n Simple_repeat Simple_repeat 2 24 0 363 283 122 69 chr11 33485640 33485740 -117297813 + L2 LINE L2 2504 2597 -717 383 266 136 34 chr11 33485956 33486133 -117297420 + L2 LINE L2 2582 2776 -538 261 0 0 0 chr11 33486135 33486164 -117297389 + (CAA)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr11 33486164 33486184 -117297369 + (A)n Simple_repeat Simple_repeat 1 20 0 2344 121 30 30 chr11 33486217 33486581 -117296972 - THE1B LTR MaLR 0 364 1 1047 270 124 39 chr11 33486607 33486995 -117296558 - MLT1L LTR MaLR -17 598 151 2501 102 34 11 chr11 33486995 33487349 -117296204 + THE1B LTR MaLR 1 362 -2 1047 270 124 39 chr11 33487349 33487494 -117296059 - MLT1L LTR MaLR -464 151 20 587 177 62 8 chr11 33487683 33487813 -117295740 - MER34B LTR ERV1 -5 560 424 694 291 54 25 chr11 33487825 33488141 -117295412 - LTR24B LTR ERV1 -7 569 245 435 171 2 30 chr11 33488214 33488308 -117295245 - LTR24B LTR ERV1 -367 98 9 885 203 27 0 chr11 33488318 33488505 -117295048 - MER34B LTR ERV1 -159 406 215 391 203 0 130 chr11 33488537 33488675 -117294878 - MER34B LTR ERV1 -440 125 6 1292 139 24 20 chr11 33488746 33489127 -117294426 + MLT2A2 LTR ERVL 170 453 0 610 231 88 114 chr11 33489191 33489602 -117293951 + MLT1H LTR MaLR 138 537 -12 891 252 33 0 chr11 33489695 33489905 -117293648 + U3 snRNA snRNA 1 217 0 306 250 103 5 chr11 33490042 33490192 -117293361 + L1ME4a LINE L1 1187 6110 -8 245 219 14 0 chr11 33490759 33490832 -117292721 + CT-rich Low_complexity Low_complexity 3 76 0 1553 195 5 76 chr11 33491620 33491919 -117291634 - MLT1B LTR MaLR 0 390 128 2028 140 0 13 chr11 33491919 33492226 -117291327 - AluJb SINE Alu -9 303 1 1553 195 5 76 chr11 33492226 33492346 -117291207 - MLT1B LTR MaLR -262 128 1 586 253 31 12 chr11 33492419 33492649 -117290904 - L1MEc LINE L1 -4780 1864 1518 303 233 83 33 chr11 33492776 33492896 -117290657 - L1MEc LINE L1 -5168 1657 1532 2764 251 149 11 chr11 33494104 33495046 -117288507 - L1MEc LINE L1 -5288 1537 466 378 265 49 0 chr11 33495066 33495168 -117288385 - L2 LINE L2 -2 3270 3164 265 156 0 0 chr11 33495388 33495433 -117288120 - L2 LINE L2 -221 3051 3007 799 227 178 27 chr11 33495501 33495726 -117287827 + MLT1L LTR MaLR 1 259 -356 566 234 15 7 chr11 33495796 33495933 -117287620 + MLT1L LTR MaLR 447 584 -31 221 329 0 24 chr11 33496566 33496651 -117286902 + CT-rich Low_complexity Low_complexity 1 83 0 256 239 34 34 chr11 33497034 33497122 -117286431 + L2 LINE L2 2977 3064 -208 218 196 143 0 chr11 33497209 33497265 -117286288 + L2 LINE L2 3208 3271 -1 306 340 0 0 chr11 33497299 33497399 -117286154 + L2 LINE L2 3172 3271 -1 2199 92 20 0 chr11 33497601 33497893 -117285660 - AluSq SINE Alu -15 298 1 736 179 168 6 chr11 33498056 33498229 -117285324 - MER3 DNA MER1_type -3 206 6 349 228 131 48 chr11 33498287 33498432 -117285121 + Charlie8 DNA MER1_type 72 228 -2189 25 0 0 0 chr11 33499575 33499600 -117283953 + GC_rich Low_complexity Low_complexity 1 25 0 2282 75 9 38 chr11 33499947 33500266 -117283287 + AluSx SINE Alu 3 312 0 237 291 38 25 chr11 33501201 33501280 -117282273 - L2 LINE L2 0 3313 3234 348 274 250 40 chr11 33502215 33502467 -117281086 + MER102b DNA MER1_type 1 305 -36 451 240 123 7 chr11 33502627 33502773 -117280780 - MIR SINE MIR -60 202 40 232 167 0 0 chr11 33502856 33502904 -117280649 - L2 LINE L2 0 3313 3266 218 192 39 0 chr11 33503034 33503086 -117280467 + L2 LINE L2 3194 3247 -25 1457 177 0 61 chr11 33503178 33503345 -117280208 - AluJo SINE Alu -14 298 155 2429 68 0 3 chr11 33503345 33503639 -117279914 - AluY SINE Alu -18 293 1 1457 177 0 61 chr11 33503639 33503765 -117279788 - AluJo SINE Alu -157 155 23 510 229 25 8 chr11 33504596 33504714 -117278839 + MIR3 SINE MIR 38 157 -51 486 296 47 18 chr11 33504717 33504886 -117278667 + MER117 DNA MER1_type 1 174 -23 250 280 27 0 chr11 33506613 33506688 -117276865 - MLT1J2 LTR MaLR -3 447 371 439 262 163 60 chr11 33506762 33506971 -117276582 - MLT1J1 LTR MaLR -168 278 37 2369 90 0 10 chr11 33506971 33507270 -117276283 + AluSg SINE Alu 3 298 -12 439 262 163 60 chr11 33507270 33507312 -117276241 - MLT1J1 LTR MaLR -409 37 1 394 301 34 20 chr11 33510114 33510260 -117273293 + MIR SINE MIR 56 203 -59 240 172 92 69 chr11 33510475 33510562 -117272991 + MIR SINE MIR 124 212 -50 536 299 103 13 chr11 33510588 33510822 -117272731 + MIR SINE MIR 8 262 0 258 224 56 40 chr11 33510831 33510956 -117272597 - MIR SINE MIR -23 239 113 259 278 186 37 chr11 33513758 33514053 -117269500 + L2 LINE L2 2804 3142 -171 1124 198 109 70 chr11 33514054 33514484 -117269069 - MLT1C LTR MaLR 0 467 21 371 285 91 30 chr11 33514510 33514675 -117268878 + L2 LINE L2 3137 3311 -2 258 309 53 22 chr11 33514767 33514861 -117268692 - MIR SINE MIR -103 105 12 249 210 25 37 chr11 33516272 33516353 -117267200 - MIR SINE MIR -29 233 154 435 244 11 3 chr11 33516363 33516481 -117267072 - MLT1I LTR MaLR -10 428 315 424 211 18 46 chr11 33516550 33516659 -117266894 - MLT1I LTR MaLR -243 166 61 196 186 169 0 chr11 33516702 33516761 -117266792 - MIR SINE MIR -115 147 79 1085 282 25 11 chr11 33516915 33517199 -117266354 + MER115 DNA AcHobo 88 375 -318 1800 192 8 47 chr11 33517204 33517273 -117266280 + MLT1A1 LTR MaLR 1 71 -294 2897 105 32 32 chr11 33517273 33517738 -117265815 - MER4C LTR ERV1 0 465 1 1800 192 8 47 chr11 33517738 33518048 -117265505 + MLT1A1 LTR MaLR 71 365 0 2052 112 0 17 chr11 33518220 33518543 -117265010 + AluSg SINE Alu 1 318 0 343 284 58 31 chr11 33518706 33518899 -117264654 + MIR SINE MIR 4 203 -59 269 274 38 38 chr11 33519278 33519384 -117264169 - MIR SINE MIR -67 141 36 275 319 33 0 chr11 33519391 33519482 -117264071 + MIR SINE MIR 118 211 -51 232 242 0 16 chr11 33519705 33519767 -117263786 + MIR SINE MIR 122 182 -80 374 273 30 0 chr11 33520442 33520541 -117263012 + MIR SINE MIR 28 129 -133 21 0 0 0 chr11 33520541 33520562 -117262991 + AT_rich Low_complexity Low_complexity 1 21 0 422 127 42 0 chr11 33520562 33520633 -117262920 - U3 snRNA snRNA -142 75 2 325 217 38 38 chr11 33520664 33520770 -117262783 + MIR SINE MIR 157 262 0 353 80 0 0 chr11 33520776 33520826 -117262727 + MADE1 DNA Mariner 31 80 0 401 271 138 24 chr11 33521321 33521568 -117261985 + L1ME4a LINE L1 5843 6117 -4 1061 188 18 23 chr11 33521720 33521938 -117261615 - MLT1A1 LTR MaLR -17 348 132 238 167 30 45 chr11 33521938 33522004 -117261549 - HSMAR1 DNA Mariner 0 1287 1223 386 43 0 0 chr11 33522017 33522064 -117261489 + MADE1 DNA Mariner 34 80 0 474 197 162 26 chr11 33522064 33522181 -117261372 - MLT1A1 LTR MaLR -232 133 1 441 301 72 14 chr11 33522432 33522641 -117260912 - MIR SINE MIR -14 248 28 22 35 0 0 chr11 33522861 33522890 -117260663 + AT_rich Low_complexity Low_complexity 1 29 0 557 297 44 69 chr11 33523242 33523649 -117259904 - L2 LINE L2 -1 3271 2875 303 267 114 111 chr11 33523714 33524047 -117259506 - L2 LINE L2 -527 2787 2454 1326 161 117 22 chr11 33524135 33524409 -117259144 + AluJb SINE Alu 1 300 -2 264 229 0 48 chr11 33524542 33524625 -117258928 - L2 LINE L2 -991 2323 2245 262 353 19 6 chr11 33525174 33525330 -117258223 - MER5B DNA MER1_type 0 178 21 * 287 308 23 15 chr11 33525198 33525331 -117258222 + MER5A DNA MER1_type 37 170 -19 295 253 110 0 chr11 33525353 33525444 -117258109 - MIR3 SINE MIR -49 159 59 1743 166 27 7 chr11 33525452 33525715 -117257838 + AluJo SINE Alu 12 283 -29 1049 74 0 7 chr11 33525715 33525864 -117257689 + (GGAA)n Simple_repeat Simple_repeat 2 149 0 1743 166 27 7 chr11 33525864 33525895 -117257658 + AluJo SINE Alu 283 312 0 974 186 0 38 chr11 33526661 33526844 -117256709 + FRAM SINE Alu 1 176 0 228 353 98 8 chr11 33527056 33527178 -117256375 + MIR SINE MIR 2 134 -128 2333 112 3 0 chr11 33527191 33527503 -117256050 - AluSq SINE Alu 0 313 1 239 273 39 0 chr11 33527506 33527583 -117255970 + MIR SINE MIR 124 203 -59 2448 131 69 5 chr11 33528201 33528607 -117254946 + MSTB1 LTR MaLR 1 432 0 1231 216 98 6 chr11 33528749 33529064 -117254489 - MER2 DNA MER2_type 0 344 1 292 305 193 17 chr11 33529110 33529467 -117254086 - L2 LINE L2 -384 2930 2511 537 274 153 13 chr11 33531280 33531587 -117251966 - L1ME4a LINE L1 -12 6109 5760 238 237 91 20 chr11 33531597 33531613 -117251940 - L1MD3 LINE L1 0 8041 8028 1959 168 3 0 chr11 33531613 33531922 -117251631 - AluJb SINE Alu -2 310 1 238 237 91 20 chr11 33531922 33532159 -117251394 - L1MD3 LINE L1 -13 8028 7789 220 340 52 0 chr11 33532265 33532362 -117251191 - L2 LINE L2 -32 3281 3180 255 203 0 0 chr11 33532504 33532563 -117250990 + (TG)n Simple_repeat Simple_repeat 1 59 0 401 258 0 69 chr11 33533019 33533178 -117250375 - MIR SINE MIR -66 196 49 1630 215 18 12 chr11 33533224 33533475 -117250078 + L1ME1 LINE L1 4922 5170 -1000 1475 147 67 135 chr11 33533475 33533876 -117249677 + MLT1A2 LTR MaLR 1 374 0 1630 215 18 12 chr11 33533876 33534192 -117249361 + L1ME1 LINE L1 5170 5489 -681 * 1796 315 15 14 chr11 33534189 33534773 -117248780 + L1PA16 LINE L1 1 585 -6202 15316 219 30 9 chr11 33534869 33539295 -117244258 + L1PA16 LINE L1 1324 5860 -937 1152 119 0 0 chr11 33539297 33539473 -117244080 + L1PA16 LINE L1 5960 6135 -682 4025 149 21 9 chr11 33539597 33539892 -117243661 + L1PA16 LINE L1 6137 6427 -390 513 0 0 0 chr11 33539892 33539949 -117243604 + (TA)n Simple_repeat Simple_repeat 1 57 0 4025 149 21 9 chr11 33539949 33540323 -117243230 + L1PA16 LINE L1 6427 6814 -3 2439 203 38 72 chr11 33540355 33540393 -117243160 + L1ME1 LINE L1 5471 5509 -657 2658 109 3 11 chr11 33540393 33540760 -117242793 + THE1B LTR MaLR 1 364 0 2439 203 38 72 chr11 33540760 33540981 -117242572 + L1ME1 LINE L1 5509 5736 -430 5259 94 8 1 chr11 33540981 33541706 -117241847 - L1PB2 LINE L1 -2 6149 5420 2439 203 38 72 chr11 33541706 33542158 -117241395 + L1ME1 LINE L1 5736 6159 -7 583 292 196 6 chr11 33543093 33543415 -117240138 - L2 LINE L2 0 3272 2890 2132 125 0 3 chr11 33543698 33543995 -117239558 - AluSx SINE Alu 0 312 17 320 206 0 0 chr11 33544061 33544124 -117239429 - MLT1K LTR MaLR -15 573 511 1611 168 112 3 chr11 33544132 33544453 -117239100 + L1MB3 LINE L1 5821 6176 -7 942 254 55 99 chr11 33544491 33544924 -117238629 - MLT1K LTR MaLR -112 476 63 183 327 91 27 chr11 33545250 33545360 -117238193 - L2 LINE L2 -582 2732 2616 529 292 30 67 chr11 33545361 33545690 -117237863 - L2 LINE L2 -849 2465 2149 848 280 22 0 chr11 33545884 33546109 -117237444 + LTR16C LTR ERVL 253 482 -9 2645 43 0 3 chr11 33546251 33546555 -117236998 + AluY SINE Alu 1 303 -8 1227 240 69 68 chr11 33546910 33547362 -117236191 + MLT1H LTR MaLR 41 545 -4 2216 105 58 28 chr11 33547454 33547817 -117235736 - THE1C LTR MaLR -1 374 1 212 258 45 34 chr11 33547894 33547983 -117235570 - MIR SINE MIR -24 238 149 1691 199 121 57 chr11 33548497 33548901 -117234652 - MER63C DNA MER1_type -142 918 541 1407 158 5 5 chr11 33548901 33549122 -117234431 - MER58A DNA MER1_type -3 221 1 1691 199 121 57 chr11 33549122 33549217 -117234336 - MER63C DNA MER1_type -519 541 453 1912 174 0 3 chr11 33549217 33549527 -117234026 - AluJb SINE Alu -3 309 1 1691 199 121 57 chr11 33549527 33549840 -117233713 - MER63C DNA MER1_type -607 453 55 286 321 170 9 chr11 33549978 33550090 -117233463 - MIR SINE MIR -115 147 18 504 114 0 0 chr11 33550774 33550844 -117232709 + THE1C LTR MaLR 272 341 -34 458 270 97 54 chr11 33550890 33551168 -117232385 - MLT1K LTR MaLR -14 574 285 2424 74 7 3 chr11 33551954 33552253 -117231300 - AluY SINE Alu -10 301 2 310 316 0 0 chr11 33553122 33553220 -117230333 + LTR29-int LTR ERV1 487 584 -6538 372 268 18 9 chr11 33553248 33553360 -117230193 + LTR29-int LTR ERV1 1505 1617 -5059 2135 140 30 33 chr11 33553661 33554026 -117229527 - THE1B LTR MaLR 0 364 1 273 180 0 0 chr11 33554204 33554254 -117229299 + LTR29-int LTR ERV1 2489 2538 -6440 254 213 0 0 chr11 33554992 33555039 -117228514 + LTR29-int LTR ERV1 3317 3363 -5615 592 319 58 18 chr11 33555752 33556094 -117227459 + LTR29-int LTR ERV1 2621 2976 -4146 677 170 0 0 chr11 33556095 33556201 -117227352 + AluJb SINE Alu 2 107 -205 550 271 51 71 chr11 33556206 33556449 -117227104 + LTR29-int LTR ERV1 4317 4552 -3874 2727 101 3 8 chr11 33556449 33556826 -117226727 - THE1C LTR MaLR 0 375 1 550 271 51 71 chr11 33556826 33556936 -117226617 + LTR29-int LTR ERV1 4552 4663 -3763 274 165 152 51 chr11 33556948 33557027 -117226526 + LTR29-int LTR ERV1 7730 7816 0 1735 176 231 53 chr11 33557952 33558480 -117225073 + LTR29 LTR ERV1 1 622 0 481 201 14 9 chr11 33558696 33558812 -117224741 - MIR SINE MIR -62 146 43 357 242 109 8 chr11 33559189 33559317 -117224236 + MIR SINE MIR 20 160 -102 201 100 0 0 chr11 33559849 33559879 -117223674 + L2 LINE L2 3267 3296 -17 213 333 11 21 chr11 33560847 33560940 -117222613 + L2 LINE L2 2967 3058 -214 184 209 0 0 chr11 33561158 33561201 -117222352 + L2 LINE L2 3269 3311 -2 237 259 0 17 chr11 33561516 33561574 -117221979 - LTR67 LTR ERVL 0 557 501 712 233 23 0 chr11 33561764 33561936 -117221617 - MER5A DNA MER1_type -12 177 2 1227 165 9 31 chr11 33562419 33562643 -117220910 + MER20 DNA MER1_type 1 219 0 565 241 115 11 chr11 33562743 33562934 -117220619 + MIR SINE MIR 48 258 -4 187 318 15 0 chr11 33563563 33563629 -117219924 - MIR3 SINE MIR 0 208 142 1645 174 10 39 chr11 33564071 33564381 -117219172 - AluJb SINE Alu -11 301 1 400 123 31 0 chr11 33564498 33564563 -117218990 + MER58 DNA MER1_type 2354 2420 0 243 267 59 20 chr11 33564591 33564692 -117218861 - L1MEc LINE L1 -4792 1604 1500 321 275 58 0 chr11 33564942 33565062 -117218491 - L1MEc LINE L1 -5096 1109 983 1023 198 20 20 chr11 33565324 33565521 -117218032 + MER20 DNA MER1_type 23 219 0 310 294 287 0 chr11 33566820 33566963 -117216590 + MER91A DNA MER1_type 8 191 -5 242 172 16 62 chr11 33567193 33567257 -117216296 + LTR67 LTR ERVL 483 543 -14 326 298 12 0 chr11 33567280 33567364 -117216189 + L2 LINE L2 3188 3272 0 2200 119 7 0 chr11 33567705 33568000 -117215553 + AluSx SINE Alu 1 297 -15 5463 136 30 24 chr11 33568000 33568895 -117214658 - MER49 LTR ERV1 -22 901 1 221 309 71 1 chr11 33568943 33569052 -117214501 - MIR SINE MIR -79 129 12 273 253 69 11 chr11 33570951 33571038 -117212515 + MIR SINE MIR 34 125 -137 325 73 0 0 chr11 33572117 33572158 -117211395 + 5S rRNA rRNA 2 42 -79 446 276 9 0 chr11 33572658 33572774 -117210779 + MER69A DNA AcHobo 2 118 -59 21 0 0 0 chr11 33572774 33572795 -117210758 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr11 33573267 33573296 -117210257 + AT_rich Low_complexity Low_complexity 1 29 0 298 292 31 39 chr11 33573557 33573687 -117209866 - MIR SINE MIR -70 192 64 2179 115 3 0 chr11 33573837 33574132 -117209421 + AluSx SINE Alu 1 296 -16 338 132 0 0 chr11 33575858 33575911 -117207642 + L2 LINE L2 3248 3300 -13 216 0 0 0 chr11 33575911 33575935 -117207618 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 222 232 130 0 chr11 33575971 33576040 -117207513 - MIR SINE MIR -140 122 45 195 327 211 0 chr11 33576101 33576205 -117207348 - L2 LINE L2 -9 3263 3138 956 150 237 23 chr11 33577231 33577497 -117206056 - MER33 DNA MER1_type -1 323 1 288 202 31 116 chr11 33577943 33578072 -117205481 - MLT1K LTR MaLR -2 586 469 450 278 83 57 chr11 33578192 33578422 -117205131 - MLT1K LTR MaLR -284 304 69 246 216 204 11 chr11 33579169 33579257 -117204296 + L2 LINE L2 3204 3308 -5 1453 51 0 0 chr11 33579776 33579951 -117203602 + AluY SINE Alu 137 311 0 288 319 57 28 chr11 33581737 33581878 -117201675 + MIR3 SINE MIR 30 174 -34 1583 193 41 0 chr11 33581933 33582108 -117201445 - AluJo SINE Alu -5 307 114 324 0 0 0 chr11 33582108 33582144 -117201409 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1583 193 41 0 chr11 33582144 33582263 -117201290 - AluJo SINE Alu -198 114 1 2565 71 0 0 chr11 33582599 33582910 -117200643 - AluY SINE Alu 0 311 1 1943 169 3 6 chr11 33582924 33583237 -117200316 - AluJb SINE Alu 0 312 1 37 23 0 0 chr11 33585141 33585185 -117198368 + AT_rich Low_complexity Low_complexity 1 44 0 1960 151 0 0 chr11 33585449 33585759 -117197794 - AluSx SINE Alu 0 314 5 2278 96 0 26 chr11 33587583 33587885 -117195668 - AluSx SINE Alu -18 294 1 440 302 112 20 chr11 33588311 33588669 -117194884 + L1ME4a LINE L1 5558 5948 -173 1946 163 41 0 chr11 33588672 33588991 -117194562 + MER7A DNA MER2_type 17 346 0 233 330 34 11 chr11 33588991 33589167 -117194386 + L1ME4a LINE L1 5939 6118 -3 2210 97 38 0 chr11 33589258 33589424 -117194129 - AluSx SINE Alu -13 299 116 261 22 65 0 chr11 33589424 33589470 -117194083 + T-rich Low_complexity Low_complexity 2 50 0 2210 97 38 0 chr11 33589470 33589591 -117193962 - AluSx SINE Alu -196 116 1 715 252 147 72 chr11 33590259 33590728 -117192825 + MLT1J LTR MaLR 8 511 0 420 315 38 38 chr11 33591436 33591671 -117191882 - MIR SINE MIR 0 262 28 312 148 0 0 chr11 33592383 33592444 -117191109 + (TC)n Simple_repeat Simple_repeat 2 62 0 207 328 56 8 chr11 33593567 33593692 -117189861 + L2 LINE L2 3139 3269 -3 434 360 45 19 chr11 33594257 33594635 -117188918 + L2 LINE L2 2457 2844 -470 576 220 101 12 chr11 33595374 33595542 -117188011 + MIR SINE MIR 36 218 -44 2039 128 7 3 chr11 33595588 33595878 -117187675 - AluSx SINE Alu -21 291 1 592 311 104 0 chr11 33596115 33596337 -117187216 + MIR SINE MIR 6 250 -12 427 186 62 0 chr11 33596348 33596445 -117187108 - L2 LINE L2 -8 3305 3203 1298 136 4 53 chr11 33597547 33597775 -117185778 + MER20 DNA MER1_type 1 217 -2 2501 64 17 0 chr11 33598141 33598437 -117185116 - AluY SINE Alu -10 301 1 288 294 63 35 chr11 33598688 33598831 -117184722 + MIR SINE MIR 104 250 -12 296 285 40 117 chr11 33599516 33599609 -117183944 + MIR SINE MIR 33 132 -130 2108 134 0 28 chr11 33599609 33599929 -117183624 - AluJo SINE Alu -1 311 1 296 285 40 117 chr11 33599929 33599974 -117183579 + MIR SINE MIR 132 179 -83 2623 175 33 9 chr11 33599974 33600430 -117183123 + MLT1C LTR MaLR 1 467 0 296 285 40 117 chr11 33600430 33600539 -117183014 + MIR SINE MIR 179 262 0 248 275 43 0 chr11 33601416 33601485 -117182068 + L2 LINE L2 3000 3071 -201 617 266 90 65 chr11 33601649 33602266 -117181287 - L1ME4a LINE L1 -1 6120 5445 210 207 49 12 chr11 33602366 33602448 -117181105 + (TTATA)n Simple_repeat Simple_repeat 2 86 0 204 176 0 0 chr11 33602493 33602527 -117181026 - MIR SINE MIR -22 240 207 25 0 0 0 chr11 33602657 33602682 -117180871 + AT_rich Low_complexity Low_complexity 1 25 0 502 307 37 37 chr11 33602704 33602919 -117180634 - MIR SINE MIR -46 216 2 2240 103 10 0 chr11 33603322 33603622 -117179931 + AluY SINE Alu 1 303 -8 387 244 89 7 chr11 33603656 33603837 -117179716 - MIR SINE MIR -11 251 30 613 291 58 17 chr11 33604725 33604966 -117178587 - MIR SINE MIR -11 251 1 2471 187 63 73 chr11 33605111 33605127 -117178426 - MER63C DNA MER1_type -229 831 816 932 134 0 32 chr11 33605127 33605284 -117178269 + L1MA9 LINE L1 6159 6310 -2 2471 187 63 73 chr11 33605284 33605982 -117177571 - MER63C DNA MER1_type -244 816 124 540 163 203 0 chr11 33606017 33606140 -117177413 - MER63C DNA MER1_type -782 148 1 849 149 22 8 chr11 33606647 33606781 -117176772 + AluJo SINE Alu 1 136 -176 1626 193 13 10 chr11 33606787 33607098 -117176455 + AluJo SINE Alu 1 312 0 243 88 0 0 chr11 33608158 33608192 -117175361 + (A)n Simple_repeat Simple_repeat 1 34 0 3108 162 14 21 chr11 33609199 33609717 -117173836 + MLT2B2 LTR ERVL 2 515 0 397 236 22 0 chr11 33609874 33609963 -117173590 - MER94 DNA DNA -40 94 4 2235 95 17 7 chr11 33610088 33610383 -117173170 - AluJo SINE Alu -14 298 1 2151 126 0 3 chr11 33610648 33610950 -117172603 + AluSx SINE Alu 1 301 -11 1587 172 17 20 chr11 33611005 33611301 -117172252 + AluJo SINE Alu 1 295 -17 2094 112 0 17 chr11 33611332 33611627 -117171926 + AluSc SINE Alu 1 290 -19 353 254 115 0 chr11 33611792 33611914 -117171639 - MIR SINE MIR -41 221 86 2015 125 6 52 chr11 33612330 33612657 -117170896 - AluSx SINE Alu 0 312 1 1271 205 121 34 chr11 33612665 33613046 -117170507 - MLT2D LTR ERVL 0 414 1 347 271 75 19 chr11 33613563 33613670 -117169883 - MIR SINE MIR -121 141 29 231 88 0 0 chr11 33613949 33613983 -117169570 + (CA)n Simple_repeat Simple_repeat 1 34 0 246 32 0 0 chr11 33614405 33614436 -117169117 + (ATG)n Simple_repeat Simple_repeat 1 31 0 721 265 48 30 chr11 33614473 33614703 -117168850 - MIR SINE MIR -13 249 16 444 19 0 0 chr11 33614703 33614756 -117168797 + (TG)n Simple_repeat Simple_repeat 2 54 0 690 260 165 41 chr11 33615034 33615570 -117167983 + L2 LINE L2 2721 3306 -7 1771 152 14 24 chr11 33615701 33615998 -117167555 - AluJb SINE Alu -17 295 2 385 333 29 0 chr11 33616093 33616231 -117167322 - MIR3 SINE MIR -26 182 41 273 181 0 36 chr11 33616890 33616973 -117166580 + GA-rich Low_complexity Low_complexity 5 84 0 762 268 127 80 chr11 33617029 33617455 -117166098 + MLT1J LTR MaLR 1 507 -4 576 334 50 20 chr11 33617473 33617850 -117165703 + L2 LINE L2 1311 1702 -1612 243 0 0 0 chr11 33617850 33617877 -117165676 + (TAA)n Simple_repeat Simple_repeat 1 27 0 576 334 50 20 chr11 33617877 33617903 -117165650 + L2 LINE L2 1702 1726 -1588 343 259 101 22 chr11 33618107 33618246 -117165307 + MIR SINE MIR 39 188 -74 1265 242 83 54 chr11 33618263 33618796 -117164757 - LTR67 LTR ERVL -8 549 2 1864 149 0 20 chr11 33618888 33619189 -117164364 + AluJo SINE Alu 6 300 -12 2163 106 0 0 chr11 33619195 33619477 -117164076 + AluSx SINE Alu 18 299 -13 1704 151 17 20 chr11 33620089 33620207 -117163346 + AluJo SINE Alu 1 118 -194 471 18 0 0 chr11 33620207 33620263 -117163290 + (TA)n Simple_repeat Simple_repeat 2 57 0 1899 111 7 54 chr11 33620263 33620561 -117162992 - AluSx SINE Alu -28 284 1 1704 151 17 20 chr11 33620561 33620739 -117162814 + AluJo SINE Alu 116 297 -15 181 309 36 18 chr11 33620740 33620795 -117162758 - MIR SINE MIR -132 76 21 565 325 45 89 chr11 33621841 33622303 -117161250 - L2 LINE L2 0 3272 2831 21 0 0 0 chr11 33622853 33622874 -117160679 + AT_rich Low_complexity Low_complexity 1 21 0 767 229 64 0 chr11 33623520 33623708 -117159845 + MLT1J2 LTR MaLR 1 200 -250 1075 155 23 50 chr11 33623756 33623975 -117159578 + MER20 DNA MER1_type 1 213 -6 237 193 70 0 chr11 33623990 33624047 -117159506 + MLT1J1 LTR MaLR 271 331 -115 371 171 0 12 chr11 33624054 33624136 -117159417 + (CA)n Simple_repeat Simple_repeat 1 81 0 352 174 109 11 chr11 33624160 33624242 -117159311 + MLT1J2 LTR MaLR 360 446 0 2209 104 0 7 chr11 33625309 33625608 -117157945 + AluSx SINE Alu 1 297 -15 188 152 30 0 chr11 33625834 33625867 -117157686 - L2 LINE L2 -18 3254 3221 28 0 0 0 chr11 33626229 33626257 -117157296 + AT_rich Low_complexity Low_complexity 1 28 0 1664 159 17 41 chr11 33626307 33626416 -117157137 + AluJo SINE Alu 12 122 -190 2291 82 7 3 chr11 33626416 33626709 -117156844 - AluSp SINE Alu -19 294 1 1664 159 17 41 chr11 33626709 33626894 -117156659 + AluJo SINE Alu 122 299 -13 690 251 120 5 chr11 33626955 33627146 -117156407 - MIR SINE MIR -37 225 13 348 343 66 21 chr11 33627442 33627731 -117155822 + LTR16C LTR ERVL 190 491 0 2046 143 0 0 chr11 33627905 33628205 -117155348 - AluJb SINE Alu -7 305 6 818 214 6 19 chr11 33628212 33628371 -117155182 + MER58B DNA MER1_type 175 331 -10 2013 140 10 3 chr11 33628373 33628680 -117154873 + AluSx SINE Alu 1 309 -3 305 238 128 102 chr11 33629454 33629689 -117153864 - L2 LINE L2 -5 3267 3027 1583 176 61 0 chr11 33630350 33630628 -117152925 + AluJo SINE Alu 1 295 -17 392 239 143 57 chr11 33630660 33630869 -117152684 - MIR SINE MIR -34 228 2 180 0 0 0 chr11 33630881 33630901 -117152652 + (A)n Simple_repeat Simple_repeat 1 20 0 432 230 113 54 chr11 33631294 33631498 -117152055 + LTR33A LTR ERVL 1 216 -307 844 270 46 29 chr11 33631554 33631861 -117151692 + LTR33A LTR ERVL 210 521 -2 1615 75 232 0 chr11 33632111 33632352 -117151201 + AluSx SINE Alu 1 297 -15 583 309 56 28 chr11 33633263 33633515 -117150038 - MIR SINE MIR -3 259 1 1165 120 0 0 chr11 33635187 33635345 -117148208 - AluSq SINE Alu -20 293 136 4571 154 57 30 chr11 33635364 33635737 -117147816 + L1MB7 LINE L1 5147 5508 -676 2235 133 38 46 chr11 33635737 33636036 -117147517 + THE1B LTR MaLR 1 298 -66 2574 7 0 0 chr11 33636036 33636313 -117147240 - AluYa5 SINE Alu -2 309 33 2235 133 38 46 chr11 33636313 33636380 -117147173 + THE1B LTR MaLR 298 364 0 4571 154 57 30 chr11 33636380 33636998 -117146555 + L1MB7 LINE L1 5508 6168 -16 1134 276 38 0 chr11 33637001 33637262 -117146291 - LTR16C LTR ERVL -157 334 64 277 262 48 0 chr11 33637331 33637415 -117146138 + MIR SINE MIR 175 262 0 802 166 53 13 chr11 33638586 33638764 -117144789 - AluJb SINE Alu 0 312 137 279 0 0 0 chr11 33638903 33638934 -117144619 + (TG)n Simple_repeat Simple_repeat 2 32 0 2293 103 3 0 chr11 33638975 33639286 -117144267 - AluSp SINE Alu -1 312 1 904 257 120 22 chr11 33639378 33639802 -117143751 - L1ME4a LINE L1 -175 5946 5480 1742 179 0 29 chr11 33640607 33640919 -117142634 + AluJo SINE Alu 1 303 -9 6023 223 100 30 chr11 33641049 33641274 -117142279 + L1MC4 LINE L1 5254 5462 -2580 1311 191 167 8 chr11 33641274 33641531 -117142022 + AluJb SINE Alu 1 298 -4 6023 223 100 30 chr11 33641531 33642049 -117141504 + L1MC4 LINE L1 5462 5943 -2099 302 0 26 0 chr11 33642049 33642087 -117141466 + (ATG)n Simple_repeat Simple_repeat 1 39 0 6023 223 100 30 chr11 33642087 33643542 -117140011 + L1MC4 LINE L1 5943 7765 -277 1380 232 138 49 chr11 33643542 33644055 -117139498 + MER34B LTR ERV1 4 562 -3 6023 223 100 30 chr11 33644055 33644348 -117139205 + L1MC4 LINE L1 7765 8036 -6 1549 271 92 50 chr11 33644425 33644796 -117138757 + L1ME3A LINE L1 916 1270 -4859 1774 167 0 10 chr11 33644796 33645101 -117138452 + AluJo SINE Alu 1 302 -10 1549 271 92 50 chr11 33645101 33646197 -117137356 + L1ME3A LINE L1 1270 2449 -3680 633 285 47 0 chr11 33646307 33646521 -117137032 + L1ME3A LINE L1 2634 2857 -3272 2551 123 20 27 chr11 33646528 33646936 -117136617 + MSTB1 LTR MaLR 15 419 -13 702 260 56 39 chr11 33646948 33647239 -117136314 + L1ME3A LINE L1 2862 3164 -2965 1130 246 9 0 chr11 33647239 33647459 -117136094 - MER58A DNA MER1_type -1 223 2 702 260 56 39 chr11 33647459 33647579 -117135974 + L1ME3A LINE L1 3164 3280 -2849 21 71 0 0 chr11 33647579 33647621 -117135932 + AT_rich Low_complexity Low_complexity 1 42 0 1850 147 0 39 chr11 33647660 33647803 -117135750 + AluJb SINE Alu 1 127 -185 1278 66 6 6 chr11 33647803 33647969 -117135584 + L1PA6 LINE L1 5982 6147 -7 1850 147 0 39 chr11 33647969 33648131 -117135422 + AluJb SINE Alu 127 294 -18 326 217 33 42 chr11 33648132 33648252 -117135301 + L1ME3A LINE L1 3324 3442 -2687 611 70 0 0 chr11 33648383 33648478 -117135075 + AluSp/q SINE Alu 216 310 0 1643 245 78 56 chr11 33648479 33649307 -117134246 + L1ME3A LINE L1 4251 5097 -1032 1116 94 12 6 chr11 33649306 33649476 -117134077 + L1MA8 LINE L1 5992 6162 -129 * 779 117 66 15 chr11 33649529 33649666 -117133887 + L1MA8 LINE L1 6144 6287 -4 2890 243 75 21 chr11 33649768 33650266 -117133287 + L1ME3A LINE L1 5237 5803 -350 399 89 0 0 chr11 33650266 33650322 -117133231 + (TGAA)n Simple_repeat Simple_repeat 2 57 0 2890 243 75 21 chr11 33650322 33650685 -117132868 + L1ME3A LINE L1 5803 6145 -8 27 0 0 0 chr11 33652330 33652357 -117131196 + AT_rich Low_complexity Low_complexity 1 27 0 367 314 95 0 chr11 33652832 33652969 -117130584 + L2 LINE L2 2904 3053 -219 439 248 74 78 chr11 33653038 33653308 -117130245 - L2 LINE L2 -48 3265 2997 297 357 103 0 chr11 33653364 33653490 -117130063 + L2 LINE L2 3133 3271 -1 391 229 50 101 chr11 33653620 33653799 -117129754 + Charlie7 DNA MER1_type 1 170 -2442 1645 149 9 62 chr11 33653933 33654254 -117129299 - AluJo SINE Alu -8 304 1 4971 108 51 23 chr11 33654308 33655125 -117128428 - Tigger3(Golem) DNA MER2_type 0 3029 2190 332 182 61 121 chr11 33655200 33655332 -117128221 + MLT1J LTR MaLR 236 359 -152 1325 171 120 0 chr11 33655436 33655711 -117127842 - AluSx SINE Alu -2 310 3 665 226 25 6 chr11 33655723 33655882 -117127671 + Charlie7 DNA MER1_type 845 1006 -1606 2248 65 0 31 chr11 33655944 33656280 -117127273 - AluY SINE Alu 0 327 1 279 253 137 53 chr11 33656702 33656892 -117126661 + L2 LINE L2 3108 3313 0 2472 30 40 10 chr11 33656924 33657225 -117126328 + AluY SINE Alu 1 310 -1 295 161 16 0 chr11 33657242 33657304 -117126249 + L1MA8 LINE L1 6227 6289 -2 204 286 36 0 chr11 33658282 33658338 -117125215 + MIR SINE MIR 93 150 -112 * 479 279 199 43 chr11 33658332 33658654 -117124899 + L3 LINE CR1 810 1181 -396 1099 149 12 18 chr11 33658933 33659101 -117124452 + FAM SINE Alu 4 170 -5 183 328 82 0 chr11 33659378 33659439 -117124114 - L2 LINE L2 -55 3258 3193 290 292 22 0 chr11 33659472 33659561 -117123992 + L3 LINE CR1 1187 1277 -300 542 272 102 68 chr11 33659682 33659917 -117123636 + MIR SINE MIR 2 244 -18 1865 133 40 10 chr11 33660003 33660304 -117123249 - AluSx SINE Alu -2 310 1 1681 156 9 75 chr11 33661335 33661669 -117121884 + AluJo SINE Alu 1 312 0 21 0 0 0 chr11 33664126 33664147 -117119406 + AT_rich Low_complexity Low_complexity 1 21 0 501 194 21 90 chr11 33664850 33664994 -117118559 + MER103 DNA DNA 14 147 -19 480 171 23 0 chr11 33665000 33665088 -117118465 + L2 LINE L2 3224 3313 0 210 240 100 0 chr11 33666206 33666256 -117117297 - L2 LINE L2 -15 3257 3203 419 264 24 40 chr11 33666359 33666484 -117117069 - MIR SINE MIR -132 130 8 198 0 0 0 chr11 33666804 33666826 -117116727 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1473 169 0 4 chr11 33666833 33667070 -117116483 - AluJb SINE Alu -76 236 1 2052 269 30 34 chr11 33667395 33667989 -117115564 - MLT1E LTR MaLR -1 592 1 2370 68 3 0 chr11 33668008 33668301 -117115252 - AluY SINE Alu -17 294 1 1618 174 166 14 chr11 33669246 33669590 -117113963 - MSTD LTR MaLR 0 396 1 6952 216 74 44 chr11 33669590 33671274 -117112279 - MSTD-int LTR MaLR 0 1735 1 997 143 14 0 chr11 33671274 33671421 -117112132 - MSTD LTR MaLR 0 396 248 1815 146 14 0 chr11 33671423 33671704 -117111849 + MER49 LTR ERV1 1 285 -638 1494 211 8 50 chr11 33671734 33672094 -117111459 + MER4D LTR ERV1 549 893 -10 1282 177 59 13 chr11 33672102 33672339 -117111214 - MSTD LTR MaLR -147 249 2 304 345 97 15 chr11 33672383 33672589 -117110964 - L2 LINE L2 -258 3055 2833 236 353 59 17 chr11 33672601 33672720 -117110833 - L2 LINE L2 -647 2667 2544 2707 19 7 3 chr11 33673040 33673349 -117110204 + AluY SINE Alu 2 311 0 377 306 67 8 chr11 33673361 33673495 -117110058 - MIR3 SINE MIR -29 179 38 1273 148 28 106 chr11 33675379 33675662 -117107891 + AluJo SINE Alu 23 283 -29 186 43 0 0 chr11 33675662 33675685 -117107868 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 342 49 0 0 chr11 33676496 33676537 -117107016 + L1PA16 LINE L1 5745 5785 -380 1437 149 88 54 chr11 33676541 33676836 -117106717 + AluJb SINE Alu 7 311 -1 228 163 0 0 chr11 33676851 33676894 -117106659 + G-rich Low_complexity Low_complexity 4 46 0 285 188 0 0 chr11 33676895 33676943 -117106610 + GA-rich Low_complexity Low_complexity 3 50 0 844 126 11 33 chr11 33676943 33677125 -117106428 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2603 138 3 3 chr11 33677133 33677524 -117106029 + L1PA16 LINE L1 5770 6160 -6 23 0 0 0 chr11 33677570 33677593 -117105960 + AT_rich Low_complexity Low_complexity 1 23 0 2112 154 89 16 chr11 33679187 33679556 -117103997 + MSTD LTR MaLR 1 396 0 2188 128 0 7 chr11 33680159 33680463 -117103090 - AluSg SINE Alu -8 302 1 427 232 126 53 chr11 33680892 33681043 -117102510 + MIR3 SINE MIR 45 206 -2 2381 97 0 0 chr11 33681162 33681461 -117102092 + AluSg SINE Alu 1 299 -11 929 304 83 54 chr11 33681885 33682402 -117101151 - MLT1H LTR MaLR -15 534 3 341 250 122 67 chr11 33682579 33682743 -117100810 + MIR SINE MIR 16 188 -74 6127 173 20 14 chr11 33682763 33683424 -117100129 - Tigger6a DNA MER2_type -514 1083 411 2249 107 0 28 chr11 33683424 33683742 -117099811 - AluSc SINE Alu 0 309 1 6127 173 20 14 chr11 33683742 33684156 -117099397 - Tigger6a DNA MER2_type -1186 411 1 1006 301 53 28 chr11 33684530 33684926 -117098627 + MLT1J LTR MaLR 14 419 -92 1843 39 0 87 chr11 33684951 33685205 -117098348 - AluSc SINE Alu -2 307 76 727 291 124 34 chr11 33685441 33685988 -117097565 + L3 LINE CR1 819 1453 -124 227 290 32 86 chr11 33686118 33686181 -117097372 + L3 LINE CR1 1481 1546 -31 198 0 0 0 chr11 33686181 33686203 -117097350 + (TG)n Simple_repeat Simple_repeat 1 22 0 2088 126 0 0 chr11 33686203 33686480 -117097073 - AluSx SINE Alu -31 281 5 227 290 32 86 chr11 33686480 33686508 -117097045 + L3 LINE CR1 1544 1568 -9 694 315 139 20 chr11 33686609 33686961 -117096592 - MLT1K LTR MaLR 0 588 195 563 294 37 6 chr11 33688698 33688861 -117094692 - MIR SINE MIR -74 188 21 369 262 165 37 chr11 33688887 33689051 -117094502 - MIR SINE MIR -49 213 29 993 256 135 58 chr11 33689066 33689369 -117094184 + MLT1J LTR MaLR 1 354 -157 2172 123 0 7 chr11 33689369 33689671 -117093882 + AluSx SINE Alu 4 303 -9 993 256 135 58 chr11 33689671 33689835 -117093718 + MLT1J LTR MaLR 354 504 -7 21 36 0 0 chr11 33690534 33690562 -117092991 + AT_rich Low_complexity Low_complexity 1 28 0 2041 146 3 3 chr11 33690571 33690872 -117092681 + AluJb SINE Alu 1 301 -11 239 250 106 43 chr11 33690912 33691120 -117092433 + L1ME LINE L1 5602 5822 -299 11613 167 12 12 chr11 33691273 33691542 -117092011 + L1PA15 LINE L1 2947 3215 -2950 2178 104 0 24 chr11 33691542 33691840 -117091713 + AluSx SINE Alu 1 291 -21 11613 167 12 12 chr11 33691840 33694627 -117088926 + L1PA15 LINE L1 3215 6134 -31 193 28 0 56 chr11 33694627 33694663 -117088890 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 503 271 50 52 chr11 33694672 33695034 -117088519 + L1MC5 LINE L1 7377 7737 -224 323 258 23 39 chr11 33695028 33695156 -117088397 + L1MC5 LINE L1 7658 7783 -178 * 555 289 14 66 chr11 33695195 33695406 -117088147 + MIR SINE MIR 20 219 -43 299 351 80 7 chr11 33696104 33696255 -117087298 + MER5B DNA MER1_type 1 162 -16 2383 154 61 7 chr11 33696630 33697040 -117086513 + MSTB1 LTR MaLR 1 432 0 257 0 30 0 chr11 33697693 33697726 -117085827 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1967 163 0 3 chr11 33697904 33698217 -117085336 + AluJb SINE Alu 1 312 0 239 164 91 0 chr11 33698689 33698744 -117084809 - L2 LINE L2 0 3313 3254 * 445 290 35 14 chr11 33698739 33698884 -117084669 + L2 LINE L2 2832 2979 -293 299 320 240 5 chr11 33698918 33699118 -117084435 + L2 LINE L2 2937 3183 -89 244 291 47 87 chr11 33699139 33699266 -117084287 + MIR SINE MIR 12 133 -129 312 182 102 31 chr11 33699266 33699377 -117084176 + L1M2 LINE L1 5658 5782 -509 1232 142 76 5 chr11 33699377 33699588 -117083965 + AluJo SINE Alu 84 309 -3 2125 179 29 11 chr11 33699589 33699968 -117083585 + L1PB4 LINE L1 5769 6154 -2 282 206 0 55 chr11 33699986 33700059 -117083494 + MIR SINE MIR 184 252 -10 2037 140 0 10 chr11 33700084 33700391 -117083162 + AluSx SINE Alu 7 310 -2 230 212 91 0 chr11 33700445 33700511 -117083042 + L1ME LINE L1 5195 5266 -880 606 274 137 57 chr11 33700529 33700661 -117082892 + L1ME LINE L1 5262 5382 -780 1351 181 87 32 chr11 33700661 33700938 -117082615 + AluJb SINE Alu 1 292 -20 2286 89 0 3 chr11 33700940 33701232 -117082321 + AluSc SINE Alu 15 305 -4 606 274 137 57 chr11 33701232 33701556 -117081997 + L1ME LINE L1 5382 5758 -404 1248 198 65 0 chr11 33702015 33702143 -117081410 - AluJo SINE Alu -49 263 145 405 0 0 0 chr11 33702143 33702188 -117081365 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1248 198 65 0 chr11 33702188 33702306 -117081247 - AluJo SINE Alu -167 145 1 266 313 21 0 chr11 33702350 33702446 -117081107 + (TGGA)n Simple_repeat Simple_repeat 4 101 0 258 136 23 0 chr11 33702558 33702602 -117080951 - MER91C DNA MER1_type -64 76 32 1134 124 57 11 chr11 33702859 33703169 -117080384 - THE1C LTR MaLR 0 375 1 336 24 0 0 chr11 33703598 33703639 -117079914 + (CA)n Simple_repeat Simple_repeat 2 42 0 943 268 143 36 chr11 33703673 33704172 -117079381 - MLT1H LTR MaLR 0 549 1 288 286 286 10 chr11 33706605 33706797 -117076756 - MIR SINE MIR -4 258 14 224 205 0 0 chr11 33707171 33707210 -117076343 + MIR SINE MIR 83 121 -87 2716 90 8 11 chr11 33707393 33707769 -117075784 + THE1C LTR MaLR 1 375 0 26 30 0 0 chr11 33708440 33708473 -117075080 + AT_rich Low_complexity Low_complexity 1 33 0 369 231 52 45 chr11 33708744 33708878 -117074675 + L1ME4a LINE L1 5959 6093 -28 3966 157 12 44 chr11 33708973 33709743 -117073810 + L1MB8 LINE L1 5429 6173 -5 290 226 19 138 chr11 33710161 33710320 -117073233 - MER5A DNA MER1_type 0 189 50 305 309 24 8 chr11 33710622 33710745 -117072808 - MIR3 SINE MIR -10 198 74 1816 124 43 43 chr11 33711281 33711413 -117072140 + AluSx SINE Alu 1 132 -180 2591 60 0 0 chr11 33711413 33711711 -117071842 + AluY SINE Alu 1 298 -13 1816 124 43 43 chr11 33711711 33711890 -117071663 + AluSx SINE Alu 131 312 0 25 0 0 0 chr11 33712051 33712076 -117071477 + AT_rich Low_complexity Low_complexity 1 25 0 296 295 0 0 chr11 33712272 33712350 -117071203 - MIR SINE MIR -143 119 42 275 198 136 12 chr11 33713350 33713431 -117070122 + L2 LINE L2 3223 3313 0 280 165 9 156 chr11 33713635 33713686 -117069867 - MARNA DNA Mariner -15 571 543 2095 126 24 0 chr11 33713686 33713980 -117069573 + AluSx SINE Alu 1 301 -11 280 165 9 156 chr11 33713980 33714037 -117069516 - MARNA DNA Mariner -43 543 479 449 230 72 20 chr11 33714169 33714321 -117069232 - MIR3 SINE MIR -8 200 41 372 200 21 50 chr11 33714582 33714687 -117068866 + MER113 DNA MER1_type? 1 103 -418 1993 139 0 26 chr11 33714687 33714996 -117068557 - AluJb SINE Alu -11 301 1 372 200 21 50 chr11 33714996 33715030 -117068523 + MER113 DNA MER1_type? 103 136 -385 2379 76 0 0 chr11 33716256 33716545 -117067008 - AluY SINE Alu -22 289 1 313 253 0 0 chr11 33716581 33716656 -117066897 - MIR SINE MIR 0 262 188 246 267 78 0 chr11 33716747 33716837 -117066716 + MIR3 SINE MIR 66 162 -46 288 237 153 46 chr11 33716840 33716971 -117066582 + MER117 DNA MER1_type 6 150 -47 815 209 9 53 chr11 33717237 33717462 -117066091 - L1MC5 LINE L1 -58 7903 7689 32 26 0 0 chr11 33718132 33718171 -117065382 + AT_rich Low_complexity Low_complexity 1 39 0 2011 129 4 0 chr11 33718886 33719166 -117064387 - AluSg SINE Alu -5 305 25 262 152 134 152 chr11 33719171 33719283 -117064270 - MIR SINE MIR -70 192 83 2378 89 0 0 chr11 33721969 33722260 -117061293 + AluSg SINE Alu 1 291 -19 181 224 41 20 chr11 33722284 33722333 -117061220 + MIR3 SINE MIR 108 157 -51 518 329 87 21 chr11 33722665 33722951 -117060602 - L3 LINE CR1 -582 995 691 238 295 62 9 chr11 33723120 33723232 -117060321 + MIR SINE MIR 10 127 -135 480 345 42 0 chr11 33723256 33723472 -117060081 - MIR SINE MIR 0 262 39 419 209 0 0 chr11 33723705 33723796 -117059757 + MIR SINE MIR 69 159 -103 237 143 32 16 chr11 33723878 33723941 -117059612 + (TTATA)n Simple_repeat Simple_repeat 1 64 0 213 163 0 20 chr11 33724134 33724183 -117059370 + MIR SINE MIR 159 206 -56 290 306 65 16 chr11 33725315 33725439 -117058114 + MIR3 SINE MIR 28 157 -51 367 257 38 55 chr11 33727061 33727246 -117056307 - MIR SINE MIR -65 143 10 2044 125 7 0 chr11 33727408 33727729 -117055824 + AluSq SINE Alu 2 324 0 1733 148 0 84 chr11 33729271 33729399 -117054154 + AluJo SINE Alu 1 138 -174 243 0 0 0 chr11 33729399 33729426 -117054127 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1733 148 0 84 chr11 33729426 33729451 -117054102 + AluJo SINE Alu 138 164 -148 1965 130 0 11 chr11 33729451 33729728 -117053825 + AluSq SINE Alu 1 274 -39 1733 148 0 84 chr11 33729728 33729905 -117053648 + AluJo SINE Alu 164 304 -8 237 269 0 0 chr11 33730443 33730495 -117053058 + L2 LINE L2 2594 2645 -669 2410 95 0 7 chr11 33730714 33731020 -117052533 + AluSg SINE Alu 1 304 -6 2015 75 10 78 chr11 33731173 33731466 -117052087 - AluSx SINE Alu -2 310 38 278 238 126 58 chr11 33731793 33732054 -117051499 + L1ME4a LINE L1 5843 6121 0 2457 197 20 18 chr11 33732190 33732687 -117050866 - MER119 DNA MER1_type 0 583 86 2439 60 0 32 chr11 33732687 33733001 -117050552 + AluSg SINE Alu 1 304 -6 255 79 0 0 chr11 33733030 33733068 -117050485 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2551 144 7 16 chr11 33733759 33734001 -117049552 + L1MB3 LINE L1 5728 5966 -217 2483 83 0 0 chr11 33734001 33734301 -117049252 + AluSg SINE Alu 1 300 -10 2551 144 7 16 chr11 33734301 33734503 -117049050 + L1MB3 LINE L1 5966 6168 -15 407 327 53 35 chr11 33735282 33735621 -117047932 + L2 LINE L2 2414 2758 -556 228 303 11 45 chr11 33736042 33736131 -117047422 + L2 LINE L2 3187 3272 0 469 202 22 0 chr11 33736326 33736415 -117047138 - Tigger5 DNA MER2_type 0 2323 2233 * 1973 164 19 115 chr11 33736414 33736747 -117046806 + MER101 LTR ERV1 11 374 -100 1600 87 50 9 chr11 33736747 33736965 -117046588 + AluSc SINE Alu 71 297 -12 2050 100 43 0 chr11 33736967 33737246 -117046307 + AluSq SINE Alu 1 291 -22 1973 164 19 115 chr11 33737246 33737291 -117046262 + MER101 LTR ERV1 375 423 -51 1502 109 9 5 chr11 33737291 33737501 -117046052 + AluSc SINE Alu 83 293 -16 1973 164 19 115 chr11 33737501 33737631 -117045922 + MER101 LTR ERV1 423 474 0 276 111 0 93 chr11 33737631 33737679 -117045874 - Tigger5 DNA MER2_type -86 2237 2195 506 202 161 8 chr11 33737693 33737817 -117045736 - Tigger5 DNA MER2_type -2150 173 31 382 188 21 21 chr11 33738584 33738680 -117044873 - MIR SINE MIR -25 237 142 261 246 14 43 chr11 33738814 33738883 -117044670 - L2 LINE L2 -1 3271 3205 21 0 0 0 chr11 33739735 33739756 -117043797 + AT_rich Low_complexity Low_complexity 1 21 0 248 290 57 32 chr11 33739814 33739938 -117043615 - L2 LINE L2 -65 3248 3122 310 181 106 32 chr11 33739974 33740068 -117043485 - L2 LINE L2 -287 3026 2926 1765 126 4 4 chr11 33740113 33740360 -117043193 + AluSq SINE Alu 1 247 -66 817 129 16 0 chr11 33740360 33740484 -117043069 + AluSg/x SINE Alu 181 306 -4 2642 185 47 48 chr11 33742658 33743479 -117040074 - LTR27 LTR ERV1 -10 1010 3 1891 158 10 3 chr11 33743484 33743787 -117039766 + AluJo SINE Alu 1 305 -7 564 282 28 14 chr11 33744426 33744642 -117038911 + L1ME4a LINE L1 5642 5860 -261 2383 67 37 3 chr11 33744684 33744984 -117038569 - AluY SINE Alu -1 310 1 26 0 0 0 chr11 33744985 33745011 -117038542 + AT_rich Low_complexity Low_complexity 1 26 0 1126 227 328 0 chr11 33745015 33745490 -117038063 + HAL1 LINE L1 177 807 -1700 893 172 53 0 chr11 33745495 33745646 -117037907 - AluJb SINE Alu -17 295 137 662 251 104 108 chr11 33745646 33746080 -117037473 + HAL1 LINE L1 798 1232 -1275 2219 123 10 0 chr11 33746080 33746381 -117037172 - AluSq SINE Alu -9 304 1 662 251 104 108 chr11 33746381 33746413 -117037140 + HAL1 LINE L1 1232 1263 -1244 2204 103 0 4 chr11 33746413 33746694 -117036859 + AluSg SINE Alu 11 290 -20 662 251 104 108 chr11 33746694 33746717 -117036836 + HAL1 LINE L1 1263 1285 -1222 2901 10 0 0 chr11 33746717 33747026 -117036527 + AluYa5 SINE Alu 1 309 -2 662 251 104 108 chr11 33747026 33747084 -117036469 + HAL1 LINE L1 1285 1342 -1165 2173 96 4 0 chr11 33747084 33747401 -117036152 + AluSg SINE Alu 1 318 0 662 251 104 108 chr11 33747401 33747598 -117035955 + HAL1 LINE L1 1342 1543 -964 819 230 71 0 chr11 33747619 33747815 -117035738 - MIR SINE MIR -28 234 25 1400 238 73 66 chr11 33747838 33747949 -117035604 + HAL1 LINE L1 1543 1652 -855 225 0 0 0 chr11 33747949 33747974 -117035579 + (TG)n Simple_repeat Simple_repeat 2 26 0 1400 238 73 66 chr11 33747974 33748667 -117034886 + HAL1 LINE L1 1652 2507 0 480 226 56 72 chr11 33749181 33749376 -117034177 - MLT1K LTR MaLR -1 587 396 230 136 23 0 chr11 33749463 33749507 -117034046 - MLT1K LTR MaLR -395 193 149 639 239 97 92 chr11 33750641 33751022 -117032531 + MLT1J LTR MaLR 110 492 -19 687 296 106 55 chr11 33751155 33751591 -117031962 + MLT1K LTR MaLR 125 582 -6 597 264 28 0 chr11 33751795 33751977 -117031576 + MIR SINE MIR 73 259 -3 2192 83 3 64 chr11 33752123 33752449 -117031104 + AluY SINE Alu 1 306 -5 337 243 0 129 chr11 33753727 33753867 -117029686 - MIR SINE MIR -19 243 122 1124 222 101 11 chr11 33754510 33754935 -117028618 + MER113 DNA MER1_type? 16 521 0 528 219 44 18 chr11 33755005 33755119 -117028434 + MIR3 SINE MIR 73 189 -19 349 278 159 66 chr11 33755517 33755744 -117027809 + MIR SINE MIR 13 260 -2 1625 181 16 0 chr11 33755778 33756082 -117027471 - AluJb SINE Alu -3 309 1 1441 84 5 0 chr11 33756934 33757124 -117026429 - AluSp SINE Alu -10 303 113 292 384 9 0 chr11 33757316 33757428 -117026125 - L2 LINE L2 -5 3267 3155 290 291 32 111 chr11 33757484 33757673 -117025880 + MIR SINE MIR 75 248 -14 31 26 0 0 chr11 33757716 33757754 -117025799 + AT_rich Low_complexity Low_complexity 1 38 0 353 317 125 56 chr11 33758616 33758935 -117024618 - L2 LINE L2 -4 3268 2928 2175 117 7 0 chr11 33758981 33759288 -117024265 + AluSx SINE Alu 1 309 -3 363 244 160 23 chr11 33760212 33760343 -117023210 - MER5A DNA MER1_type 0 189 41 946 231 48 15 chr11 33760344 33760816 -117022737 - MLT1F1 LTR MaLR -1 566 1 572 298 92 9 chr11 33760869 33760949 -117022604 + MIR SINE MIR 16 88 -174 2205 84 20 0 chr11 33760949 33761246 -117022307 + AluSx SINE Alu 1 303 -9 572 298 92 9 chr11 33761246 33761393 -117022160 + MIR SINE MIR 88 262 0 379 297 10 10 chr11 33761697 33761798 -117021755 + MER5A DNA MER1_type 89 189 0 191 35 0 35 chr11 33762641 33762670 -117020883 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 236 241 120 95 chr11 33762677 33762835 -117020718 - L2 LINE L2 -19 3294 3133 2266 93 7 0 chr11 33763716 33764018 -117019535 - AluSp SINE Alu -9 304 1 23 33 0 0 chr11 33764025 33764055 -117019498 + AT_rich Low_complexity Low_complexity 1 30 0 433 305 35 23 chr11 33765383 33765557 -117017996 - MIR SINE MIR -66 196 21 787 308 21 4 chr11 33765717 33765957 -117017596 - MIR SINE MIR -10 252 9 946 157 24 0 chr11 33767486 33767652 -117015901 + L1MB5 LINE L1 5721 5890 -284 2058 115 0 14 chr11 33767736 33768032 -117015521 + AluSx SINE Alu 1 292 -20 688 268 12 0 chr11 33768036 33768204 -117015349 + L2 LINE L2 2534 2703 -611 2949 151 39 19 chr11 33768206 33768777 -117014776 - L1MB5 LINE L1 0 6174 5593 695 95 29 0 chr11 33768777 33768876 -117014677 - L1MA4A LINE L1 -5 6298 6191 2351 73 0 3 chr11 33768928 33769229 -117014324 + AluY SINE Alu 1 300 -11 212 203 34 0 chr11 33769232 33769357 -117014196 + (TA)n Simple_repeat Simple_repeat 1 129 0 1887 136 31 0 chr11 33769357 33769643 -117013910 - AluSx SINE Alu -17 295 1 2062 122 0 13 chr11 33770331 33770610 -117012943 + AluSc SINE Alu 1 277 -32 185 0 40 0 chr11 33770610 33770635 -117012918 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2062 122 0 13 chr11 33770635 33770667 -117012886 + AluSc SINE Alu 277 308 -1 276 329 0 0 chr11 33770824 33770897 -117012656 - L2 LINE L2 -21 3251 3179 2047 168 139 22 chr11 33770901 33771353 -117012200 - MLT1D LTR MaLR 0 505 1 1207 106 6 0 chr11 33771501 33771671 -117011882 + AluSg/x SINE Alu 137 307 -5 263 242 219 29 chr11 33771806 33772036 -117011517 - L2 LINE L2 -484 2830 2645 1939 123 0 28 chr11 33772036 33772353 -117011200 - AluSx SINE Alu -2 310 3 263 242 219 29 chr11 33772353 33772473 -117011080 - L2 LINE L2 -669 2645 2413 392 258 11 0 chr11 33772558 33772651 -117010902 + MIR SINE MIR 169 262 0 2901 169 15 78 chr11 33772963 33773519 -117010034 - LTR9 LTR ERV1 0 612 101 2077 61 79 0 chr11 33773519 33773799 -117009754 + AluSq SINE Alu 1 302 -11 2901 169 15 78 chr11 33773799 33773895 -117009658 - LTR9 LTR ERV1 -511 101 1 2227 90 0 6 chr11 33773948 33774260 -117009293 - AluY SINE Alu -1 310 1 2077 118 0 16 chr11 33775290 33775596 -117007957 + AluSc SINE Alu 1 301 -8 243 109 236 0 chr11 33775734 33775789 -117007764 - THE1B LTR MaLR 0 375 308 2000 128 53 35 chr11 33775854 33776173 -117007380 - THE1B LTR MaLR -39 325 1 11907 91 9 9 chr11 33776173 33777753 -117005800 - THE1B-int LTR MaLR 0 1580 1 2487 105 28 30 chr11 33777755 33778118 -117005435 - THE1B LTR MaLR -2 362 1 807 66 0 0 chr11 33778206 33778312 -117005241 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 1769 153 7 10 chr11 33778406 33778707 -117004846 - AluJo SINE Alu -12 300 1 3044 203 26 49 chr11 33778939 33779701 -117003852 - L1ME2 LINE L1 0 6164 5420 1961 155 45 17 chr11 33779704 33780059 -117003494 + MLT1A1 LTR MaLR 1 365 0 263 113 97 16 chr11 33780251 33780313 -117003240 + L1M4 LINE L1 5816 5882 -296 425 194 22 7 chr11 33780313 33780421 -117003132 + MER31B LTR ERV1 1 112 -373 384 40 0 0 chr11 33780423 33780473 -117003080 + (TG)n Simple_repeat Simple_repeat 2 51 0 692 174 0 0 chr11 33780475 33780584 -117002969 - FLAM_A SINE Alu -21 121 13 2014 113 0 7 chr11 33780618 33780909 -117002644 - AluSx SINE Alu -23 289 1 265 302 75 19 chr11 33781159 33781265 -117002288 + MIR SINE MIR 20 131 -77 527 173 182 0 chr11 33781367 33781477 -117002076 - MLT1C LTR MaLR -334 133 4 365 284 138 0 chr11 33781584 33781700 -117001853 + MIR3 SINE MIR 46 177 -31 327 49 0 0 chr11 33781741 33781782 -117001771 + (T)n Simple_repeat Simple_repeat 1 41 0 339 214 83 12 chr11 33782128 33782212 -117001341 - MIR SINE MIR -12 250 161 734 222 50 15 chr11 33782214 33782412 -117001141 + LTR41 LTR ERVL 1 205 -568 485 192 0 48 chr11 33782921 33783046 -117000507 + LTR41 LTR ERVL 654 772 -1 421 307 47 13 chr11 33783047 33783197 -117000356 - MIR SINE MIR -98 164 10 2167 109 6 3 chr11 33783331 33783642 -116999911 + AluSx SINE Alu 1 312 0 298 206 0 68 chr11 33784241 33784314 -116999239 + MIR3 SINE MIR 12 79 -129 524 233 13 88 chr11 33784427 33784544 -116999009 - MIR SINE MIR 0 262 159 2180 91 7 0 chr11 33784544 33784840 -116998713 - AluSc SINE Alu -11 298 1 524 233 13 88 chr11 33784840 33784881 -116998672 - MIR SINE MIR -103 159 116 505 263 58 45 chr11 33785106 33785262 -116998291 - MIR SINE MIR -48 214 57 389 188 104 73 chr11 33785885 33785981 -116997572 + MER63 DNA MER1_type 27 751 -311 422 70 18 0 chr11 33786075 33786132 -116997421 + Alu SINE Alu 2 59 -259 324 343 188 39 chr11 33786275 33786522 -116997031 + L2 LINE L2 2886 3197 -75 1907 156 82 30 chr11 33786522 33786927 -116996626 + MSTA LTR MaLR 3 428 0 324 343 188 39 chr11 33786927 33787014 -116996539 + L2 LINE L2 3197 3270 -2 308 344 133 6 chr11 33788323 33788503 -116995050 - MIR SINE MIR 0 262 60 396 301 90 15 chr11 33790747 33790880 -116992673 + MIR SINE MIR 4 146 -116 1026 160 5 56 chr11 33792204 33792417 -116991136 - MER20 DNA MER1_type 0 219 18 285 290 0 11 chr11 33793074 33793167 -116990386 + MER5A DNA MER1_type 11 102 -87 2216 74 0 3 chr11 33793327 33793610 -116989943 + AluSg SINE Alu 10 291 -19 886 131 0 0 chr11 33793627 33793757 -116989796 + AluSg/x SINE Alu 125 254 -56 407 192 136 33 chr11 33793819 33793970 -116989583 + MIR SINE MIR 25 188 -63 321 258 101 14 chr11 33794541 33794724 -116988829 - MIR SINE MIR -10 252 3 316 0 45 0 chr11 33795925 33795969 -116987584 + (CA)n Simple_repeat Simple_repeat 2 47 0 412 252 205 62 chr11 33797832 33798042 -116985511 - MIR SINE MIR -3 259 20 477 238 47 2 chr11 33798773 33798895 -116984658 + MIR SINE MIR 30 166 -63 1644 155 11 21 chr11 33798895 33799213 -116984340 - AluJb SINE Alu 0 315 1 23 33 0 0 chr11 33799728 33799758 -116983795 + AT_rich Low_complexity Low_complexity 1 30 0 237 298 158 0 chr11 33800936 33801050 -116982503 + MIR SINE MIR 123 254 -8 1694 161 16 16 chr11 33801820 33802124 -116981429 - AluJo SINE Alu -8 304 1 186 211 228 0 chr11 33802537 33802594 -116980959 + MIR SINE MIR 177 246 -16 2077 109 42 0 chr11 33803409 33803693 -116979860 - AluSx SINE Alu -16 296 1 215 252 81 45 chr11 33805123 33805234 -116978319 - MIR3 SINE MIR -3 205 91 1770 187 3 13 chr11 33805246 33805551 -116978002 - AluJb SINE Alu -10 302 1 666 300 16 16 chr11 33806493 33806683 -116976870 + MIR SINE MIR 2 191 -71 2009 160 55 3 chr11 33806691 33806806 -116976747 + L1MC2 LINE L1 5832 5940 -404 2618 61 0 3 chr11 33806806 33807118 -116976435 + AluY SINE Alu 1 311 0 2009 160 55 3 chr11 33807118 33807384 -116976169 + L1MC2 LINE L1 5940 6233 -111 194 289 0 0 chr11 33807402 33807447 -116976106 + MIR SINE MIR 199 243 -19 2905 145 84 19 chr11 33808840 33809432 -116974121 + L1MB8 LINE L1 5548 6178 0 2185 125 3 0 chr11 33809474 33809771 -116973782 - AluSx SINE Alu -14 298 1 200 203 31 62 chr11 33809771 33809835 -116973718 - MER5B DNA MER1_type -115 63 2 1668 182 23 17 chr11 33810480 33810782 -116972771 - AluJo SINE Alu -8 304 1 376 279 274 6 chr11 33811286 33811465 -116972088 - L3 LINE CR1 -4 1573 1347 2166 89 10 20 chr11 33811504 33811808 -116971745 - AluY SINE Alu -10 301 1 2371 81 10 0 chr11 33811923 33812221 -116971332 + AluSg SINE Alu 1 301 -9 658 335 133 24 chr11 33812484 33812935 -116970618 - L3 LINE CR1 -955 622 123 455 295 47 21 chr11 33813131 33813324 -116970229 - Charlie8 DNA MER1_type -2184 233 36 333 190 0 0 chr11 33813330 33813388 -116970165 + AluSp/q SINE Alu 233 290 -13 263 161 59 0 chr11 33813388 33813506 -116970047 + (TA)n Simple_repeat Simple_repeat 2 126 0 277 266 221 26 chr11 33813530 33813684 -116969869 + MIR SINE MIR 69 252 -10 441 243 36 27 chr11 33813699 33813810 -116969743 - MIR SINE MIR -108 154 43 1977 121 0 134 chr11 33814089 33814478 -116969075 - MER1B DNA MER1_type 0 337 1 25 0 0 0 chr11 33814553 33814578 -116968975 + AT_rich Low_complexity Low_complexity 1 25 0 2446 93 0 0 chr11 33814748 33815058 -116968495 + AluSx SINE Alu 1 310 -2 225 178 0 0 chr11 33815791 33815836 -116967717 + A-rich Low_complexity Low_complexity 1 45 0 2084 117 38 0 chr11 33815872 33816162 -116967391 + AluSx SINE Alu 1 301 -11 2319 106 0 6 chr11 33816163 33816561 -116966992 + AluSx SINE Alu 2 397 0 283 295 17 35 chr11 33816563 33816736 -116966817 + L1MC5 LINE L1 7354 7523 -438 21 0 0 0 chr11 33817095 33817116 -116966437 + AT_rich Low_complexity Low_complexity 1 21 0 403 261 97 70 chr11 33817155 33817387 -116966166 + L1M4 LINE L1 5030 5271 -875 1595 156 87 28 chr11 33817387 33817676 -116965877 - AluJo SINE Alu -5 307 2 403 261 97 70 chr11 33817676 33817700 -116965853 + L1M4 LINE L1 5271 5293 -853 707 230 53 129 chr11 33817701 33817849 -116965704 + L2 LINE L2 1502 1660 -1654 2230 115 3 16 chr11 33817849 33818162 -116965391 - AluSx SINE Alu -3 309 1 707 230 53 129 chr11 33818162 33818408 -116965145 + L2 LINE L2 1660 1866 -1448 322 196 54 108 chr11 33818480 33818628 -116964925 + L1ME4a LINE L1 5982 6121 0 234 0 0 0 chr11 33819000 33819026 -116964527 + (CA)n Simple_repeat Simple_repeat 2 27 0 320 331 99 6 chr11 33819392 33819564 -116963989 + L1ME4a LINE L1 5930 6117 -4 720 208 48 39 chr11 33821516 33821747 -116961806 - MER112 DNA MER1_type -16 244 12 458 299 80 49 chr11 33821772 33821996 -116961557 + MIR SINE MIR 21 251 -11 180 0 0 0 chr11 33822204 33822224 -116961329 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 1878 154 0 7 chr11 33822227 33822506 -116961047 - AluJb SINE Alu -35 277 1 2200 127 0 0 chr11 33822526 33822825 -116960728 + AluSx SINE Alu 5 303 -9 200 323 0 0 chr11 33823205 33823270 -116960283 + GA-rich Low_complexity Low_complexity 4 68 0 2364 78 7 0 chr11 33823298 33823594 -116959959 + AluSp SINE Alu 1 298 -15 585 264 135 14 chr11 33824662 33824870 -116958683 + MIR SINE MIR 20 252 -10 2149 130 0 0 chr11 33827632 33827925 -116955628 - AluSx SINE Alu -19 293 1 228 200 0 0 chr11 33828018 33828058 -116955495 + Charlie5 DNA MER1_type 1 40 -2572 560 193 47 7 chr11 33828064 33828214 -116955339 + Charlie5 DNA MER1_type 2430 2585 -27 382 259 15 61 chr11 33828217 33828348 -116955205 + MIR SINE MIR 75 199 -63 312 237 93 10 chr11 33828426 33828523 -116955030 - MIR SINE MIR -51 211 107 195 42 0 0 chr11 33828612 33828636 -116954917 + (TAA)n Simple_repeat Simple_repeat 3 26 0 766 298 40 16 chr11 33831539 33831787 -116951766 + MIR SINE MIR 8 261 -1 2342 97 0 3 chr11 33831812 33832112 -116951441 + AluSc SINE Alu 1 299 -10 595 284 85 34 chr11 33832176 33832412 -116951141 + MIR SINE MIR 13 260 -2 2253 118 10 0 chr11 33832827 33833131 -116950422 + AluSx SINE Alu 1 307 -5 237 65 0 0 chr11 33837910 33837941 -116945612 + (A)n Simple_repeat Simple_repeat 1 31 0 621 69 0 0 chr11 33838336 33838423 -116945130 + (GA)n Simple_repeat Simple_repeat 2 88 0 1984 81 0 23 chr11 33839366 33839627 -116943926 - AluSx SINE Alu -10 302 48 193 161 0 0 chr11 33839845 33839876 -116943677 + MIR SINE MIR 46 76 -186 219 125 0 0 chr11 33842870 33842910 -116940643 + (CGG)n Simple_repeat Simple_repeat 2 41 0 225 159 0 0 chr11 33843345 33843389 -116940164 + (TGGG)n Simple_repeat Simple_repeat 1 44 0 268 188 0 0 chr11 33846399 33846447 -116937106 - MIR SINE MIR -57 151 104 630 226 54 59 chr11 33846463 33846649 -116936904 + MIR SINE MIR 8 192 -70 255 330 43 21 chr11 33846702 33846796 -116936757 - MIR3 SINE MIR -110 98 3 297 0 0 0 chr11 33848004 33848037 -116935516 + (A)n Simple_repeat Simple_repeat 1 33 0 180 77 0 0 chr11 33849397 33849423 -116934130 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 214 349 73 28 chr11 33849438 33849547 -116934006 - L2 LINE L2 -40 3232 3119 426 258 200 0 chr11 33849839 33849994 -116933559 + MIR SINE MIR 76 261 -1 351 303 62 0 chr11 33850388 33850509 -116933044 + MIR SINE MIR 34 162 -46 303 274 141 15 chr11 33850620 33850755 -116932798 + MIR SINE MIR 90 241 -21 720 332 45 0 chr11 33850866 33851110 -116932443 + MIR SINE MIR 6 260 -2 321 255 43 0 chr11 33851973 33852067 -116931486 - MER94 DNA DNA -21 113 16 26 0 0 0 chr11 33852082 33852108 -116931445 + AT_rich Low_complexity Low_complexity 1 26 0 2313 116 3 0 chr11 33852618 33852929 -116930624 - AluSx SINE Alu 0 312 1 1144 131 22 83 chr11 33853055 33853284 -116930269 + MER20 DNA MER1_type 1 215 -4 2333 85 3 3 chr11 33853319 33853624 -116929929 + AluY SINE Alu 1 305 -6 369 275 122 15 chr11 33855425 33855556 -116927997 - MIR3 SINE MIR 0 208 64 2327 85 10 0 chr11 33855755 33856048 -116927505 + AluSq SINE Alu 1 296 -17 194 152 0 43 chr11 33857114 33857160 -116926393 + CT-rich Low_complexity Low_complexity 4 47 0 416 284 56 27 chr11 33858762 33858949 -116924604 - MIR SINE MIR 0 262 66 2383 84 0 34 chr11 33858949 33859269 -116924284 + AluSc SINE Alu 1 309 0 416 284 56 27 chr11 33859269 33859290 -116924263 - MIR SINE MIR -196 66 47 238 257 129 0 chr11 33859375 33859445 -116924108 - LTR33 LTR ERVL -2 519 441 1229 144 86 0 chr11 33859470 33859657 -116923896 - AluSg/x SINE Alu -24 288 86 1296 256 42 21 chr11 33859657 33860082 -116923471 - LTR33 LTR ERVL -64 457 24 703 272 22 0 chr11 33860084 33860308 -116923245 - HAL1 LINE L1 -854 1653 1425 2006 94 56 10 chr11 33860367 33860655 -116922898 + AluY SINE Alu 1 301 -10 312 27 0 0 chr11 33862244 33862281 -116921272 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 297 366 38 8 chr11 33862285 33862416 -116921137 - L2 LINE L2 -17 3255 3121 1666 92 0 14 chr11 33862417 33862635 -116920918 + AluSq SINE Alu 75 289 -24 528 324 48 0 chr11 33862707 33862914 -116920639 - MIR SINE MIR -40 222 6 311 306 73 54 chr11 33862940 33863262 -116920291 - L2 LINE L2 -190 3082 2741 2257 115 0 0 chr11 33863544 33863832 -116919721 + AluSx SINE Alu 1 288 -24 1394 232 53 65 chr11 33864155 33864664 -116918889 + MLT1D LTR MaLR 1 503 -2 414 187 47 28 chr11 33864690 33864797 -116918756 - MER117 DNA MER1_type -48 149 41 622 231 66 23 chr11 33864925 33865123 -116918430 + MIR SINE MIR 45 252 -10 2413 89 3 10 chr11 33865187 33865501 -116918052 - AluSx SINE Alu 0 312 1 213 398 0 9 chr11 33865584 33865692 -116917861 - L2 LINE L2 -727 2587 2481 2297 104 0 0 chr11 33866000 33866299 -116917254 + AluSg SINE Alu 1 299 -11 2394 82 0 23 chr11 33866378 33866683 -116916870 - AluY SINE Alu -13 298 1 411 303 77 13 chr11 33867559 33867714 -116915839 + MIR3 SINE MIR 37 201 -7 227 252 25 76 chr11 33867771 33867817 -116915736 + L1ME4a LINE L1 5548 5595 -526 1588 177 0 47 chr11 33867817 33867997 -116915556 - AluJo SINE Alu -5 307 147 2216 86 45 0 chr11 33867997 33868287 -116915266 - AluY SINE Alu -8 303 1 1588 177 0 47 chr11 33868287 33868428 -116915125 - AluJo SINE Alu -165 147 1 227 252 25 76 chr11 33868428 33868500 -116915053 + L1ME4a LINE L1 5595 5660 -461 237 233 81 47 chr11 33868504 33868590 -116914963 + L1ME4a LINE L1 5685 5773 -2035 587 135 18 27 chr11 33868843 33868945 -116914608 + Charlie5 DNA MER1_type 12 114 -2510 2221 98 0 33 chr11 33868945 33869251 -116914302 - AluSg SINE Alu -14 296 1 1864 154 33 0 chr11 33869263 33869562 -116913991 - AluJb SINE Alu -3 309 1 1251 144 0 5 chr11 33869640 33870013 -116913540 + AluSg/x SINE Alu 112 312 0 209 180 20 0 chr11 33870522 33870572 -116912981 + GA-rich Low_complexity Low_complexity 3 53 0 208 219 0 0 chr11 33870940 33870981 -116912572 + L2 LINE L2 3205 3245 -27 2095 129 10 0 chr11 33870992 33871301 -116912252 - AluSx SINE Alu 0 312 1 2451 53 0 0 chr11 33871476 33871790 -116911763 - AluY SINE Alu 0 314 1 277 332 101 34 chr11 33871790 33872088 -116911465 - L2 LINE L2 -10 3303 2986 1717 182 3 3 chr11 33872572 33872868 -116910685 + AluJb SINE Alu 11 306 -6 904 238 32 11 chr11 33872942 33873224 -116910329 - L1MA4 LINE L1 -2 6298 6011 254 203 0 17 chr11 33873467 33873526 -116910027 - L1MC/D LINE L1 -2016 5792 5735 2289 89 0 7 chr11 33873564 33873845 -116909708 - AluSc SINE Alu -29 280 2 324 93 0 0 chr11 33874838 33874881 -116908672 - MADE1 DNA Mariner -37 43 1 324 219 52 0 chr11 33874932 33875028 -116908525 + L1ME4a LINE L1 6008 6108 -13 296 256 50 41 chr11 33875078 33875188 -116908365 + L1MD2 LINE L1 5051 5164 -982 2059 97 0 4 chr11 33875188 33875455 -116908098 + AluSx SINE Alu 1 266 -46 580 198 160 44 chr11 33875508 33875835 -116907718 + L1MD2 LINE L1 5149 5486 -744 613 173 0 0 chr11 33875840 33875944 -116907609 + FLAM_C SINE Alu 38 141 -2 2937 199 81 85 chr11 33875954 33876071 -116907482 + L1MD2 LINE L1 5495 5611 -748 1719 184 0 14 chr11 33876071 33876364 -116907189 - AluJb SINE Alu -23 289 1 2937 199 81 85 chr11 33876364 33876807 -116906746 + L1MD2 LINE L1 5611 6052 -307 2108 97 29 0 chr11 33876807 33877086 -116906467 - AluSq SINE Alu -26 287 1 2937 199 81 85 chr11 33877086 33877391 -116906162 + L1MD2 LINE L1 6052 6357 -2 1574 182 62 56 chr11 33877525 33877565 -116905988 - L1MB5 LINE L1 -10 6164 6126 1530 170 24 27 chr11 33877565 33877859 -116905694 - AluJo SINE Alu -19 293 1 1574 182 62 56 chr11 33877859 33878208 -116905345 - L1MB5 LINE L1 -48 6126 5773 418 194 0 0 chr11 33878235 33878302 -116905251 - AluJ/FLAM SINE Alu -244 68 2 183 156 0 0 chr11 33878339 33878371 -116905182 + CT-rich Low_complexity Low_complexity 2 33 0 2116 127 10 0 chr11 33878379 33878686 -116904867 - AluSg SINE Alu 0 310 1 434 345 0 25 chr11 33879433 33879633 -116903920 - MIR SINE MIR -12 250 56 2253 110 0 0 chr11 33879693 33879985 -116903568 + AluSx SINE Alu 10 301 -11 551 267 148 14 chr11 33879985 33880195 -116903358 + MIR SINE MIR 22 259 -3 641 283 108 0 chr11 33880500 33880712 -116902841 - ERVL LTR ERVL -5504 260 26 2462 65 16 7 chr11 33880712 33881020 -116902533 + AluY SINE Alu 1 311 0 715 144 9 9 chr11 33881062 33881173 -116902380 + MER66B LTR ERV1 373 483 -3 633 170 22 67 chr11 33881318 33881534 -116902019 + MER66A LTR ERV1 97 245 -233 1214 162 10 0 chr11 33881535 33881733 -116901820 - AluJb SINE Alu -10 302 103 299 250 221 15 chr11 33882078 33882214 -116901339 - MIR3 SINE MIR -43 165 2 1744 188 3 3 chr11 33882542 33882830 -116900723 + AluJb SINE Alu 5 292 -20 1153 135 0 0 chr11 33882943 33883106 -116900447 + AluSg/x SINE Alu 132 294 -16 2353 155 6 77 chr11 33883116 33883544 -116900009 - MER66B LTR ERV1 0 486 29 2087 122 34 3 chr11 33883544 33883838 -116899715 + AluSx SINE Alu 1 303 -9 2124 105 44 10 chr11 33883839 33884133 -116899420 + AluSp SINE Alu 1 304 -9 2353 155 6 77 chr11 33884133 33884225 -116899328 - MER66B LTR ERV1 -456 30 1 2259 113 0 0 chr11 33885074 33885374 -116898179 + AluY SINE Alu 1 300 -11 567 291 51 8 chr11 33885648 33885885 -116897668 - MIR SINE MIR -1 261 15 671 259 128 4 chr11 33888018 33888261 -116895292 - L1ME3A LINE L1 -229 5941 5669 2266 94 0 57 chr11 33888318 33888649 -116894904 + AluSx SINE Alu 1 312 0 681 255 82 57 chr11 33888651 33888876 -116894677 - LTR16C LTR ERVL -21 470 235 2682 49 0 0 chr11 33888876 33889184 -116894369 + AluY SINE Alu 1 308 -3 681 255 82 57 chr11 33889184 33889240 -116894313 - LTR16C LTR ERVL -256 235 182 441 70 0 0 chr11 33889839 33889933 -116893620 + Alu SINE Alu 225 318 0 798 206 6 6 chr11 33890495 33890660 -116892893 + FRAM SINE Alu 1 165 -11 1554 141 20 184 chr11 33890756 33890803 -116892750 - MLT2D LTR ERVL 0 414 361 279 0 0 0 chr11 33890803 33890834 -116892719 + (TG)n Simple_repeat Simple_repeat 2 32 0 1554 141 20 184 chr11 33890834 33891167 -116892386 - MLT2D LTR ERVL -53 361 131 2473 93 0 0 chr11 33891167 33891477 -116892076 + AluY SINE Alu 1 310 -1 1554 141 20 184 chr11 33891477 33891590 -116891963 - MLT2D LTR ERVL -283 131 1 539 313 38 0 chr11 33891594 33891754 -116891799 + MER117 DNA MER1_type 32 197 0 2408 109 0 0 chr11 33891853 33892165 -116891388 - AluSx SINE Alu 0 312 1 656 250 162 80 chr11 33892222 33892686 -116890867 + L1ME3A LINE L1 5669 6170 0 1032 114 0 0 chr11 33892920 33893052 -116890501 - AluSq/x SINE Alu -181 132 1 186 297 176 22 chr11 33893133 33893224 -116890329 - L2 LINE L2 -41 3231 3127 1768 171 0 14 chr11 33894157 33894450 -116889103 - AluJo SINE Alu -23 289 1 2243 108 0 7 chr11 33894613 33894908 -116888645 + AluSg SINE Alu 1 293 -17 530 153 0 0 chr11 33894942 33895027 -116888526 - FRAM SINE Alu -18 158 74 288 310 30 10 chr11 33895196 33895296 -116888257 - L2 LINE L2 0 3313 3212 367 158 79 0 chr11 33895671 33895747 -116887806 - L1MB3 LINE L1 -2 6181 6100 2078 133 0 7 chr11 33895759 33896052 -116887501 - AluSg SINE Alu -19 291 1 839 152 0 0 chr11 33896084 33896216 -116887337 - FLAM_C SINE Alu -1 132 1 2572 66 0 0 chr11 33896348 33896652 -116886901 - AluY SINE Alu -7 304 1 1824 115 4 0 chr11 33897120 33897373 -116886180 - AluSx SINE Alu 0 312 59 226 233 0 0 chr11 33897474 33897517 -116886036 + GA-rich Low_complexity Low_complexity 2 44 0 379 293 77 17 chr11 33897818 33897999 -116885554 + MIR SINE MIR 65 256 -6 196 362 67 9 chr11 33898186 33898291 -116885262 - L2 LINE L2 -11 3261 3151 256 326 36 88 chr11 33898373 33898566 -116884987 - L3 LINE CR1 -17 1560 1378 324 0 0 0 chr11 33898875 33898911 -116884642 + (TTA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr11 33898951 33898979 -116884574 + AT_rich Low_complexity Low_complexity 1 28 0 2294 110 0 0 chr11 33899008 33899300 -116884253 + AluSx SINE Alu 1 292 -20 269 163 0 0 chr11 33899302 33899351 -116884202 + MER116 DNA Mariner 15 63 -17 374 278 0 9 chr11 33900166 33900274 -116883279 - L1ME LINE L1 -298 5823 5717 1802 181 7 3 chr11 33900330 33900682 -116882871 - AluJb SINE Alu 0 353 1 1480 117 0 0 chr11 33901158 33901354 -116882199 + AluSx SINE Alu 33 228 -84 696 199 74 7 chr11 33901359 33901510 -116882043 - MLT1A2 LTR MaLR -229 161 1 1457 185 116 41 chr11 33901511 33901949 -116881604 - L1MC5 LINE L1 -435 7526 7056 * 16568 31 4 8 chr11 33901942 33904808 -116878745 + L1PA4 LINE L1 3326 6178 0 24 32 0 0 chr11 33906252 33906283 -116877270 + GC_rich Low_complexity Low_complexity 1 31 0 815 252 105 8 chr11 33956408 33956781 -116826772 - L1M4 LINE L1 -2878 3268 2860 * 1911 144 86 0 chr11 33956770 33957096 -116826457 - L1PA16 LINE L1 -7 6159 5806 1311 248 107 10 chr11 33957098 33957603 -116825950 - L1M4 LINE L1 -3276 2870 2317 238 104 21 21 chr11 33957603 33957651 -116825902 + (TCCC)n Simple_repeat Simple_repeat 3 50 0 766 158 0 24 chr11 33958673 33958800 -116824753 + FLAM_C SINE Alu 14 137 -6 341 26 0 0 chr11 33959037 33959075 -116824478 - L1P LINE L1 -3572 2574 2537 * 2468 150 54 14 chr11 33959069 33959510 -116824043 + L1MC3 LINE L1 7102 7560 -225 1966 123 0 3 chr11 33959518 33959871 -116823682 - AluSx SINE Alu 0 352 1 2002 223 38 7 chr11 33959873 33960420 -116823133 - L1M4 LINE L1 -782 5364 4801 1182 137 71 18 chr11 33960520 33960746 -116822807 - Tigger3(Golem) DNA MER2_type -288 2741 2504 1406 196 7 11 chr11 33960760 33961041 -116822512 - AluJo SINE Alu -30 282 3 1042 203 11 0 chr11 33961063 33961240 -116822313 - Tigger3(Golem) DNA MER2_type -2848 181 3 315 0 0 0 chr11 33961359 33961394 -116822159 + (TG)n Simple_repeat Simple_repeat 2 36 0 3247 178 16 5 chr11 33961442 33962008 -116821545 - LTR39 LTR ERV1 0 783 212 2274 84 13 52 chr11 33962014 33962395 -116821158 - MER41A LTR ERV1 0 554 189 575 162 29 44 chr11 33962745 33962881 -116820672 - LTR39 LTR ERV1 -649 134 1 1894 107 18 4 chr11 33963439 33963720 -116819833 - AluSx SINE Alu -27 285 1 387 266 48 16 chr11 33963793 33963917 -116819636 - MIR SINE MIR -44 218 91 2062 122 0 13 chr11 33964557 33964836 -116818717 + AluSc SINE Alu 1 277 -32 185 0 40 0 chr11 33964836 33964861 -116818692 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2062 122 0 13 chr11 33964861 33964893 -116818660 + AluSc SINE Alu 277 308 -1 276 329 0 0 chr11 33965050 33965123 -116818430 - L2 LINE L2 -21 3251 3179 2047 168 139 22 chr11 33965127 33965579 -116817974 - MLT1D LTR MaLR 0 505 1 1207 106 6 0 chr11 33965727 33965897 -116817656 + AluSg/x SINE Alu 135 305 -5 263 242 219 29 chr11 33966032 33966262 -116817291 - L2 LINE L2 -484 2830 2645 1939 123 0 28 chr11 33966262 33966579 -116816974 - AluSx SINE Alu -2 310 3 263 242 219 29 chr11 33966579 33966699 -116816854 - L2 LINE L2 -669 2645 2413 392 258 11 0 chr11 33966784 33966877 -116816676 + MIR SINE MIR 169 262 0 2901 169 15 78 chr11 33967189 33967745 -116815808 - LTR9 LTR ERV1 0 612 101 2077 61 79 0 chr11 33967745 33968025 -116815528 + AluSq SINE Alu 1 302 -11 2901 169 15 78 chr11 33968025 33968121 -116815432 - LTR9 LTR ERV1 -511 101 1 2227 90 0 6 chr11 33968174 33968486 -116815067 - AluY SINE Alu -1 310 1 2077 118 0 16 chr11 33969516 33969822 -116813731 + AluSc SINE Alu 1 301 -8 243 109 236 0 chr11 33969960 33970015 -116813538 - THE1B LTR MaLR 0 375 308 2000 128 53 35 chr11 33970080 33970399 -116813154 - THE1B LTR MaLR -39 325 1 11907 91 9 9 chr11 33970399 33971979 -116811574 - THE1B-int LTR MaLR 0 1580 1 2487 105 28 30 chr11 33971981 33972344 -116811209 - THE1B LTR MaLR -2 362 1 807 66 0 0 chr11 33972432 33972538 -116811015 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 1769 153 7 10 chr11 33972632 33972933 -116810620 - AluJo SINE Alu -12 300 1 3044 203 26 49 chr11 33973165 33973927 -116809626 - L1ME2 LINE L1 0 6164 5420 1961 155 45 17 chr11 33973930 33974285 -116809268 + MLT1A1 LTR MaLR 1 365 0 263 113 97 16 chr11 33974477 33974539 -116809014 + L1M4 LINE L1 5816 5882 -296 425 194 22 7 chr11 33974539 33974647 -116808906 + MER31B LTR ERV1 1 112 -373 384 40 0 0 chr11 33974649 33974699 -116808854 + (TG)n Simple_repeat Simple_repeat 2 51 0 692 174 0 0 chr11 33974701 33974810 -116808743 - FLAM_A SINE Alu -21 121 13 2014 113 0 7 chr11 33974844 33975135 -116808418 - AluSx SINE Alu -23 289 1 265 302 75 19 chr11 33975385 33975491 -116808062 + MIR SINE MIR 20 131 -77 527 173 182 0 chr11 33975593 33975703 -116807850 - MLT1C LTR MaLR -334 133 4 365 284 138 0 chr11 33975810 33975926 -116807627 + MIR3 SINE MIR 46 177 -31 327 49 0 0 chr11 33975967 33976008 -116807545 + (T)n Simple_repeat Simple_repeat 1 41 0 339 214 83 12 chr11 33976354 33976438 -116807115 - MIR SINE MIR -12 250 161 734 222 50 15 chr11 33976440 33976638 -116806915 + LTR41 LTR ERVL 1 205 -568 485 192 0 48 chr11 33977147 33977272 -116806281 + LTR41 LTR ERVL 654 772 -1 421 307 47 13 chr11 33977273 33977423 -116806130 - MIR SINE MIR -98 164 10 2167 109 6 3 chr11 33977557 33977868 -116805685 + AluSx SINE Alu 1 312 0 298 206 0 68 chr11 33978467 33978540 -116805013 + MIR3 SINE MIR 12 79 -129 524 233 13 88 chr11 33978653 33978770 -116804783 - MIR SINE MIR 0 262 159 2180 91 7 0 chr11 33978770 33979066 -116804487 - AluSc SINE Alu -11 298 1 524 233 13 88 chr11 33979066 33979107 -116804446 - MIR SINE MIR -103 159 116 505 263 58 45 chr11 33979332 33979488 -116804065 - MIR SINE MIR -48 214 57 389 188 104 73 chr11 33980111 33980207 -116803346 + MER63 DNA MER1_type 27 751 -311 422 70 18 0 chr11 33980301 33980358 -116803195 + Alu SINE Alu 2 59 -259 324 343 188 39 chr11 33980501 33980748 -116802805 + L2 LINE L2 2886 3197 -75 1907 156 82 30 chr11 33980748 33981153 -116802400 + MSTA LTR MaLR 3 428 0 324 343 188 39 chr11 33981153 33981240 -116802313 + L2 LINE L2 3197 3270 -2 308 344 133 6 chr11 33982549 33982729 -116800824 - MIR SINE MIR 0 262 60 396 301 90 15 chr11 33984973 33985106 -116798447 + MIR SINE MIR 4 146 -116 1026 160 5 56 chr11 33986430 33986643 -116796910 - MER20 DNA MER1_type 0 219 18 285 290 0 11 chr11 33987300 33987393 -116796160 + MER5A DNA MER1_type 11 102 -87 2216 74 0 3 chr11 33987553 33987836 -116795717 + AluSg SINE Alu 10 291 -19 886 131 0 0 chr11 33987853 33987983 -116795570 + AluSg/x SINE Alu 127 256 -56 407 192 136 33 chr11 33988045 33988196 -116795357 + MIR SINE MIR 25 188 -63 321 258 101 14 chr11 33988767 33988950 -116794603 - MIR SINE MIR -10 252 3 316 0 45 0 chr11 33990151 33990195 -116793358 + (CA)n Simple_repeat Simple_repeat 2 47 0 412 252 205 62 chr11 33992058 33992268 -116791285 - MIR SINE MIR -3 259 20 477 238 47 2 chr11 33992999 33993121 -116790432 + MIR SINE MIR 30 166 -63 1644 155 11 21 chr11 33993121 33993439 -116790114 - AluJb SINE Alu 0 315 1 23 33 0 0 chr11 33993954 33993984 -116789569 + AT_rich Low_complexity Low_complexity 1 30 0 237 298 158 0 chr11 33995162 33995276 -116788277 + MIR SINE MIR 123 254 -8 1694 161 16 16 chr11 33996046 33996350 -116787203 - AluJo SINE Alu -8 304 1 186 211 228 0 chr11 33996763 33996820 -116786733 + MIR SINE MIR 177 246 -16 1939 109 42 0 chr11 33997635 33997919 -116785634 - AluSx SINE Alu -16 296 1 213 252 81 45 chr11 33999349 33999460 -116784093 - MIR3 SINE MIR -3 205 91 1620 187 3 13 chr11 33999472 33999777 -116783776 - AluJb SINE Alu -10 302 1 665 300 16 16 chr11 34000719 34000909 -116782644 + MIR SINE MIR 2 191 -71 2120 152 58 5 chr11 34000917 34001032 -116782521 + L1MC2 LINE L1 5832 5940 -404 2469 61 0 3 chr11 34001032 34001344 -116782209 + AluY SINE Alu 1 311 0 2120 152 58 5 chr11 34001344 34001610 -116781943 + L1MC2 LINE L1 5940 6233 -111 196 289 0 0 chr11 34001628 34001673 -116781880 + MIR SINE MIR 199 243 -19 3028 140 86 20 chr11 34003066 34003658 -116779895 + L1MB8 LINE L1 5548 6178 0 2036 125 3 0 chr11 34003700 34003997 -116779556 - AluSx SINE Alu -14 298 1 199 203 31 62 chr11 34003997 34004061 -116779492 - MER5B DNA MER1_type -115 63 2 1520 182 23 17 chr11 34004706 34005008 -116778545 - AluJo SINE Alu -8 304 1 373 279 274 6 chr11 34005512 34005691 -116777862 - L3 LINE CR1 -4 1573 1347 2024 89 10 20 chr11 34005730 34006034 -116777519 - AluY SINE Alu -10 301 1 2224 81 10 0 chr11 34006149 34006447 -116777106 + AluSg SINE Alu 1 301 -9 660 335 133 24 chr11 34006710 34007161 -116776392 - L3 LINE CR1 -955 622 123 490 269 45 97 chr11 34007242 34007550 -116776003 - Charlie8 DNA MER1_type -1003 1414 36 353 190 0 0 chr11 34007556 34007614 -116775939 + AluSp/q SINE Alu 233 290 -13 263 161 59 0 chr11 34007614 34007732 -116775821 + (TA)n Simple_repeat Simple_repeat 2 126 0 280 266 221 26 chr11 34007756 34007910 -116775643 + MIR SINE MIR 69 252 -10 441 243 36 27 chr11 34007925 34008036 -116775517 - MIR SINE MIR -108 154 43 1977 121 0 134 chr11 34008315 34008704 -116774849 - MER1B DNA MER1_type 0 337 1 25 0 0 0 chr11 34008779 34008804 -116774749 + AT_rich Low_complexity Low_complexity 1 25 0 2446 93 0 0 chr11 34008974 34009284 -116774269 + AluSx SINE Alu 1 310 -2 225 178 0 0 chr11 34010017 34010062 -116773491 + A-rich Low_complexity Low_complexity 1 45 0 2084 117 38 0 chr11 34010098 34010388 -116773165 + AluSx SINE Alu 1 301 -11 2319 106 0 6 chr11 34010389 34010787 -116772766 + AluSx SINE Alu 2 397 0 283 295 17 35 chr11 34010789 34010962 -116772591 + L1MC5 LINE L1 7354 7523 -438 21 0 0 0 chr11 34011321 34011342 -116772211 + AT_rich Low_complexity Low_complexity 1 21 0 403 261 97 70 chr11 34011381 34011613 -116771940 + L1M4 LINE L1 5030 5271 -875 1595 156 87 28 chr11 34011613 34011902 -116771651 - AluJo SINE Alu -5 307 2 403 261 97 70 chr11 34011902 34011926 -116771627 + L1M4 LINE L1 5271 5293 -853 707 230 53 129 chr11 34011927 34012075 -116771478 + L2 LINE L2 1502 1660 -1654 2230 115 3 16 chr11 34012075 34012388 -116771165 - AluSx SINE Alu -3 309 1 707 230 53 129 chr11 34012388 34012634 -116770919 + L2 LINE L2 1660 1866 -1448 322 196 54 108 chr11 34012706 34012854 -116770699 + L1ME4a LINE L1 5982 6121 0 234 0 0 0 chr11 34013226 34013252 -116770301 + (CA)n Simple_repeat Simple_repeat 2 27 0 320 331 99 6 chr11 34013618 34013790 -116769763 + L1ME4a LINE L1 5930 6117 -4 720 208 48 39 chr11 34015742 34015973 -116767580 - MER112 DNA MER1_type -16 244 12 458 299 80 49 chr11 34015998 34016222 -116767331 + MIR SINE MIR 21 251 -11 180 0 0 0 chr11 34016430 34016450 -116767103 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 1878 154 0 7 chr11 34016453 34016732 -116766821 - AluJb SINE Alu -35 277 1 2200 127 0 0 chr11 34016752 34017051 -116766502 + AluSx SINE Alu 5 303 -9 200 323 0 0 chr11 34017431 34017496 -116766057 + GA-rich Low_complexity Low_complexity 4 68 0 2364 78 7 0 chr11 34017524 34017820 -116765733 + AluSp SINE Alu 1 298 -15 585 264 135 14 chr11 34018888 34019096 -116764457 + MIR SINE MIR 20 252 -10 2149 130 0 0 chr11 34021858 34022151 -116761402 - AluSx SINE Alu -19 293 1 228 200 0 0 chr11 34022244 34022284 -116761269 + Charlie5 DNA MER1_type 1 40 -2572 560 193 47 7 chr11 34022290 34022440 -116761113 + Charlie5 DNA MER1_type 2430 2585 -27 382 259 15 61 chr11 34022443 34022574 -116760979 + MIR SINE MIR 75 199 -63 312 237 93 10 chr11 34022652 34022749 -116760804 - MIR SINE MIR -51 211 107 195 42 0 0 chr11 34022838 34022862 -116760691 + (TAA)n Simple_repeat Simple_repeat 3 26 0 766 298 40 16 chr11 34025765 34026013 -116757540 + MIR SINE MIR 8 261 -1 2342 97 0 3 chr11 34026038 34026338 -116757215 + AluSc SINE Alu 1 299 -10 595 284 85 34 chr11 34026402 34026638 -116756915 + MIR SINE MIR 13 260 -2 2253 118 10 0 chr11 34027053 34027357 -116756196 + AluSx SINE Alu 1 307 -5 237 65 0 0 chr11 34032136 34032167 -116751386 + (A)n Simple_repeat Simple_repeat 1 31 0 621 69 0 0 chr11 34032562 34032649 -116750904 + (GA)n Simple_repeat Simple_repeat 2 88 0 1984 81 0 23 chr11 34033592 34033853 -116749700 - AluSx SINE Alu -10 302 48 193 161 0 0 chr11 34034071 34034102 -116749451 + MIR SINE MIR 46 76 -186 219 125 0 0 chr11 34037096 34037136 -116746417 + (CGG)n Simple_repeat Simple_repeat 2 41 0 225 159 0 0 chr11 34037571 34037615 -116745938 + (TGGG)n Simple_repeat Simple_repeat 1 44 0 268 188 0 0 chr11 34040625 34040673 -116742880 - MIR SINE MIR -57 151 104 630 226 54 59 chr11 34040689 34040875 -116742678 + MIR SINE MIR 8 192 -70 255 330 43 21 chr11 34040928 34041022 -116742531 - MIR3 SINE MIR -110 98 3 297 0 0 0 chr11 34042230 34042263 -116741290 + (A)n Simple_repeat Simple_repeat 1 33 0 180 77 0 0 chr11 34043623 34043649 -116739904 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 214 349 73 28 chr11 34043664 34043773 -116739780 - L2 LINE L2 -40 3232 3119 426 258 200 0 chr11 34044065 34044220 -116739333 + MIR SINE MIR 76 261 -1 351 303 62 0 chr11 34044614 34044735 -116738818 + MIR SINE MIR 34 162 -46 303 274 141 15 chr11 34044846 34044981 -116738572 + MIR SINE MIR 90 241 -21 720 332 45 0 chr11 34045092 34045336 -116738217 + MIR SINE MIR 6 260 -2 321 255 43 0 chr11 34046199 34046293 -116737260 - MER94 DNA DNA -21 113 16 26 0 0 0 chr11 34046308 34046334 -116737219 + AT_rich Low_complexity Low_complexity 1 26 0 2313 116 3 0 chr11 34046844 34047155 -116736398 - AluSx SINE Alu 0 312 1 1144 131 22 83 chr11 34047281 34047510 -116736043 + MER20 DNA MER1_type 1 215 -4 2333 85 3 3 chr11 34047545 34047850 -116735703 + AluY SINE Alu 1 305 -6 430 290 107 0 chr11 34049651 34049782 -116733771 - MIR3 SINE MIR 0 208 64 2339 85 10 0 chr11 34049981 34050274 -116733279 + AluSq SINE Alu 1 296 -17 194 152 0 43 chr11 34051340 34051386 -116732167 + CT-rich Low_complexity Low_complexity 4 47 0 231 315 105 7 chr11 34051428 34051571 -116731982 - MIR SINE MIR -48 214 58 503 300 66 37 chr11 34052988 34053175 -116730378 - MIR SINE MIR 0 262 65 2409 84 0 34 chr11 34053175 34053495 -116730058 + AluSc SINE Alu 1 309 0 503 300 66 37 chr11 34053495 34053550 -116730003 - MIR SINE MIR -197 65 13 1246 149 74 19 chr11 34053668 34053883 -116729670 - AluSg/x SINE Alu 0 312 86 1197 259 42 21 chr11 34053883 34054308 -116729245 - LTR33 LTR ERVL -64 457 24 636 272 22 0 chr11 34054310 34054534 -116729019 - HAL1 LINE L1 -854 1653 1425 2022 94 56 10 chr11 34054593 34054881 -116728672 + AluY SINE Alu 1 301 -10 312 27 0 0 chr11 34056470 34056507 -116727046 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 338 366 38 8 chr11 34056511 34056642 -116726911 - L2 LINE L2 -17 3255 3121 1682 95 0 14 chr11 34056643 34056864 -116726689 + AluSq SINE Alu 75 292 -21 617 324 48 0 chr11 34056933 34057140 -116726413 - MIR SINE MIR -40 222 6 396 306 73 54 chr11 34057166 34057488 -116726065 - L2 LINE L2 -190 3082 2741 2277 117 0 0 chr11 34057770 34058061 -116725492 + AluSx SINE Alu 1 291 -21 184 282 171 51 chr11 34058235 34058352 -116725201 - L2 LINE L2 0 3272 3142 1394 232 53 65 chr11 34058381 34058554 -116724999 + MLT1D LTR MaLR 1 175 -330 998 140 6 13 chr11 34058554 34058711 -116724842 - AluJb SINE Alu -5 307 152 1394 232 53 65 chr11 34058711 34058890 -116724663 + MLT1D LTR MaLR 175 503 -2 414 187 47 28 chr11 34058916 34059023 -116724530 - MER117 DNA MER1_type -48 149 41 622 231 66 23 chr11 34059151 34059349 -116724204 + MIR SINE MIR 45 252 -10 2413 89 3 10 chr11 34059413 34059727 -116723826 - AluSx SINE Alu 0 312 1 213 398 0 9 chr11 34059810 34059918 -116723635 - L2 LINE L2 -727 2587 2481 2297 104 0 0 chr11 34060226 34060525 -116723028 + AluSg SINE Alu 1 299 -11 2394 82 0 23 chr11 34060604 34060909 -116722644 - AluY SINE Alu -13 298 1 411 303 77 13 chr11 34061785 34061940 -116721613 + MIR3 SINE MIR 37 201 -7 227 252 25 76 chr11 34061997 34062043 -116721510 + L1ME4a LINE L1 5548 5595 -526 1588 177 0 47 chr11 34062043 34062223 -116721330 - AluJo SINE Alu -5 307 147 2216 86 45 0 chr11 34062223 34062513 -116721040 - AluY SINE Alu -8 303 1 1588 177 0 47 chr11 34062513 34062654 -116720899 - AluJo SINE Alu -165 147 1 227 252 25 76 chr11 34062654 34062726 -116720827 + L1ME4a LINE L1 5595 5660 -461 237 233 81 47 chr11 34062730 34062816 -116720737 + L1ME4a LINE L1 5685 5773 -2035 587 135 18 27 chr11 34063069 34063171 -116720382 + Charlie5 DNA MER1_type 12 114 -2510 2221 98 0 33 chr11 34063171 34063477 -116720076 - AluSg SINE Alu -14 296 1 1864 154 33 0 chr11 34063489 34063788 -116719765 - AluJb SINE Alu -3 309 1 1251 144 0 5 chr11 34063866 34064239 -116719314 + AluSg/x SINE Alu 112 312 0 209 180 20 0 chr11 34064748 34064798 -116718755 + GA-rich Low_complexity Low_complexity 3 53 0 208 219 0 0 chr11 34065166 34065207 -116718346 + L2 LINE L2 3246 3286 -27 2095 129 10 0 chr11 34065218 34065527 -116718026 - AluSx SINE Alu 0 312 1 2451 53 0 0 chr11 34065702 34066016 -116717537 - AluY SINE Alu 0 314 1 277 332 101 34 chr11 34066016 34066314 -116717239 - L2 LINE L2 -10 3303 2986 1717 182 3 3 chr11 34066798 34067094 -116716459 + AluJb SINE Alu 11 306 -6 904 238 32 11 chr11 34067168 34067450 -116716103 - L1MA4 LINE L1 -2 6298 6011 254 203 0 17 chr11 34067693 34067752 -116715801 - L1MC/D LINE L1 -2016 5792 5735 2289 89 0 7 chr11 34067790 34068071 -116715482 - AluSc SINE Alu -29 280 2 324 93 0 0 chr11 34069064 34069107 -116714446 - MADE1 DNA Mariner -37 43 1 324 219 52 0 chr11 34069158 34069254 -116714299 + L1ME4a LINE L1 6008 6108 -13 296 256 50 41 chr11 34069304 34069414 -116714139 + L1MD2 LINE L1 5051 5164 -982 2059 97 0 4 chr11 34069414 34069681 -116713872 + AluSx SINE Alu 1 266 -46 580 198 160 44 chr11 34069734 34070061 -116713492 + L1MD2 LINE L1 5149 5486 -744 613 173 0 0 chr11 34070066 34070170 -116713383 + FLAM_C SINE Alu 38 141 -2 2937 199 81 85 chr11 34070180 34070297 -116713256 + L1MD2 LINE L1 5495 5611 -748 1719 184 0 14 chr11 34070297 34070590 -116712963 - AluJb SINE Alu -23 289 1 2937 199 81 85 chr11 34070590 34071033 -116712520 + L1MD2 LINE L1 5611 6052 -307 2108 97 29 0 chr11 34071033 34071312 -116712241 - AluSq SINE Alu -26 287 1 2937 199 81 85 chr11 34071312 34071617 -116711936 + L1MD2 LINE L1 6052 6357 -2 1574 182 62 56 chr11 34071751 34071791 -116711762 - L1MB5 LINE L1 -10 6164 6126 1530 170 24 27 chr11 34071791 34072085 -116711468 - AluJo SINE Alu -19 293 1 1574 182 62 56 chr11 34072085 34072434 -116711119 - L1MB5 LINE L1 -48 6126 5773 418 194 0 0 chr11 34072461 34072528 -116711025 - AluJ/FLAM SINE Alu -244 68 2 183 156 0 0 chr11 34072565 34072597 -116710956 + CT-rich Low_complexity Low_complexity 2 33 0 2116 127 10 0 chr11 34072605 34072912 -116710641 - AluSg SINE Alu 0 310 1 434 345 0 25 chr11 34073659 34073859 -116709694 - MIR SINE MIR -12 250 56 2253 110 0 0 chr11 34073919 34074211 -116709342 + AluSx SINE Alu 10 301 -11 551 267 148 14 chr11 34074211 34074421 -116709132 + MIR SINE MIR 22 259 -3 641 283 108 0 chr11 34074726 34074938 -116708615 - ERVL LTR ERVL -5504 260 26 2462 65 16 7 chr11 34074938 34075246 -116708307 + AluY SINE Alu 1 311 0 715 144 9 9 chr11 34075288 34075399 -116708154 + MER66A LTR ERV1 365 475 -3 633 170 22 67 chr11 34075544 34075760 -116707793 + MER66A LTR ERV1 97 245 -233 1214 162 10 0 chr11 34075761 34075959 -116707594 - AluJb SINE Alu -10 302 103 299 250 221 15 chr11 34076304 34076440 -116707113 - MIR3 SINE MIR -43 165 2 1744 188 3 3 chr11 34076768 34077056 -116706497 + AluJb SINE Alu 5 292 -20 1153 135 0 0 chr11 34077169 34077332 -116706221 + AluSg/x SINE Alu 134 296 -16 2353 155 6 77 chr11 34077342 34077770 -116705783 - MER66B LTR ERV1 0 486 29 2087 122 34 3 chr11 34077770 34078064 -116705489 + AluSx SINE Alu 1 303 -9 2124 105 44 10 chr11 34078065 34078359 -116705194 + AluSp SINE Alu 1 304 -9 2353 155 6 77 chr11 34078359 34078451 -116705102 - MER66B LTR ERV1 -456 30 1 2259 113 0 0 chr11 34079300 34079600 -116703953 + AluY SINE Alu 1 300 -11 567 291 51 8 chr11 34079874 34080111 -116703442 - MIR SINE MIR -1 261 15 671 259 128 4 chr11 34082244 34082487 -116701066 - L1ME3A LINE L1 -229 5941 5669 2266 94 0 57 chr11 34082544 34082875 -116700678 + AluSx SINE Alu 1 312 0 681 255 82 57 chr11 34082877 34083102 -116700451 - LTR16C LTR ERVL -21 470 235 2682 49 0 0 chr11 34083102 34083410 -116700143 + AluY SINE Alu 1 308 -3 681 255 82 57 chr11 34083410 34083466 -116700087 - LTR16C LTR ERVL -256 235 182 441 70 0 0 chr11 34084065 34084159 -116699394 + Alu SINE Alu 225 318 0 798 206 6 6 chr11 34084721 34084886 -116698667 + FRAM SINE Alu 1 165 -11 1554 141 20 184 chr11 34084982 34085029 -116698524 - MLT2D LTR ERVL 0 414 361 279 0 0 0 chr11 34085029 34085060 -116698493 + (TG)n Simple_repeat Simple_repeat 2 32 0 1554 141 20 184 chr11 34085060 34085393 -116698160 - MLT2D LTR ERVL -53 361 131 2473 93 0 0 chr11 34085393 34085703 -116697850 + AluY SINE Alu 1 310 -1 1554 141 20 184 chr11 34085703 34085816 -116697737 - MLT2D LTR ERVL -283 131 1 539 313 38 0 chr11 34085820 34085980 -116697573 + MER117 DNA MER1_type 32 197 0 2408 109 0 0 chr11 34086079 34086391 -116697162 - AluSx SINE Alu 0 312 1 656 250 162 80 chr11 34086448 34086912 -116696641 + L1ME3A LINE L1 5669 6170 0 1032 114 0 0 chr11 34087146 34087278 -116696275 - AluSq/x SINE Alu -180 132 1 186 297 176 22 chr11 34087359 34087450 -116696103 - L2 LINE L2 -41 3231 3127 1768 171 0 14 chr11 34088383 34088676 -116694877 - AluJo SINE Alu -23 289 1 2243 108 0 7 chr11 34088839 34089134 -116694419 + AluSg SINE Alu 1 293 -17 530 153 0 0 chr11 34089168 34089253 -116694300 - FRAM SINE Alu -18 158 74 288 310 30 10 chr11 34089422 34089522 -116694031 - L2 LINE L2 0 3313 3212 367 158 79 0 chr11 34089897 34089973 -116693580 - L1MB3 LINE L1 -2 6181 6100 2078 133 0 7 chr11 34089985 34090278 -116693275 - AluSg SINE Alu -19 291 1 839 152 0 0 chr11 34090310 34090442 -116693111 - FLAM_C SINE Alu -1 132 1 2572 66 0 0 chr11 34090574 34090878 -116692675 - AluY SINE Alu -7 304 1 1824 115 4 0 chr11 34091346 34091599 -116691954 - AluSx SINE Alu 0 312 59 434 307 7 0 chr11 34092631 34092771 -116690782 + L1ME4a LINE L1 5696 5836 -285 1819 173 3 0 chr11 34092831 34093115 -116690438 - AluJo SINE Alu -27 285 1 2903 164 14 18 chr11 34093507 34093941 -116689612 + L1MB7 LINE L1 5466 5899 -285 2533 58 0 0 chr11 34093941 34094235 -116689318 + AluY SINE Alu 1 294 -17 2903 164 14 18 chr11 34094235 34094313 -116689240 + L1MB7 LINE L1 5899 5976 -208 1834 120 8 0 chr11 34094351 34094609 -116688944 + AluSq SINE Alu 1 260 -53 1704 150 0 4 chr11 34094987 34095254 -116688299 - AluSg SINE Alu -10 300 35 196 216 0 0 chr11 34095441 34095478 -116688075 - L2 LINE L2 0 3313 3277 1561 244 107 28 chr11 34095867 34096483 -116687070 + Charlie2a DNA MER1_type 1549 2213 -649 1035 121 0 20 chr11 34096501 34096650 -116686903 + AluSq/x SINE Alu 1 146 -166 748 219 285 17 chr11 34096656 34096863 -116686690 + Charlie2a DNA MER1_type 2343 2493 -369 2145 119 0 3 chr11 34096863 34097158 -116686395 + AluSx SINE Alu 1 294 -18 748 219 285 17 chr11 34097158 34097360 -116686193 + Charlie2a DNA MER1_type 2493 2862 0 214 269 224 13 chr11 34097524 34097680 -116685873 + MIR SINE MIR 72 260 -2 2129 68 0 19 chr11 34098089 34098355 -116685198 + AluY SINE Alu 36 296 -15 1463 129 9 0 chr11 34098640 34098857 -116684696 - AluSg/x SINE Alu -7 302 84 209 171 0 0 chr11 34099528 34099563 -116683990 + (TG)n Simple_repeat Simple_repeat 2 36 0 1874 132 54 60 chr11 34099564 34099913 -116683640 - MER7A DNA MER2_type 0 346 2 267 31 0 0 chr11 34099914 34099946 -116683607 + (TG)n Simple_repeat Simple_repeat 1 32 0 252 195 122 12 chr11 34100029 34100111 -116683442 + MIR SINE MIR 105 195 -67 577 288 241 22 chr11 34100204 34100607 -116682946 + L2 LINE L2 2819 3309 -4 1457 182 20 50 chr11 34101724 34102021 -116681532 - AluJb SINE Alu -24 288 1 871 254 125 10 chr11 34102125 34102428 -116681125 - MER46C DNA MER2_type 0 338 1 25 65 0 0 chr11 34102955 34103001 -116680552 + AT_rich Low_complexity Low_complexity 1 46 0 2243 105 27 0 chr11 34104308 34104604 -116678949 + AluSx SINE Alu 1 304 -8 2321 93 7 0 chr11 34105060 34105350 -116678203 - AluSg SINE Alu -18 292 1 270 237 186 0 chr11 34105372 34105469 -116678084 - MIR3 SINE MIR -5 203 89 324 0 0 0 chr11 34105545 34105581 -116677972 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 2251 99 0 0 chr11 34105696 34105988 -116677565 - AluSx SINE Alu -20 292 1 1155 229 61 107 chr11 34108994 34109404 -116674149 - L1MC5 LINE L1 -36 7925 7498 2153 53 4 19 chr11 34109404 34109668 -116673885 + AluY SINE Alu 23 282 -29 261 0 0 0 chr11 34109671 34109700 -116673853 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2339 79 0 0 chr11 34109709 34109988 -116673565 + AluSc SINE Alu 1 279 -30 257 111 0 0 chr11 34109988 34110015 -116673538 + AluJb SINE Alu 1 306 0 1155 229 61 107 chr11 34110015 34110214 -116673339 - L1MC5 LINE L1 -473 7488 7330 339 130 111 0 chr11 34110275 34110329 -116673224 - MER8 DNA MER2_type 0 239 180 2371 113 89 34 chr11 34110337 34110580 -116672973 + Tigger2 DNA MER2_type 2281 2558 -160 1319 182 79 41 chr11 34110580 34110871 -116672682 + AluJo SINE Alu 4 305 -7 2371 113 89 34 chr11 34110871 34111042 -116672511 + Tigger2 DNA MER2_type 2558 2718 0 2438 85 0 3 chr11 34111343 34111650 -116671903 + AluSx SINE Alu 1 306 -6 2384 92 0 0 chr11 34112708 34113013 -116670540 - AluSx SINE Alu -7 305 1 2366 92 0 10 chr11 34113235 34113538 -116670015 - AluSg SINE Alu -10 300 1 2497 65 0 7 chr11 34113800 34114109 -116669444 - AluSc SINE Alu 0 309 3 186 270 79 16 chr11 34115523 34115586 -116667967 - MIR SINE MIR -168 94 28 384 279 23 107 chr11 34115869 34116084 -116667469 + L2 LINE L2 2963 3159 -113 2171 105 3 16 chr11 34116563 34116869 -116666684 + AluSx SINE Alu 1 302 -10 1754 101 4 8 chr11 34117216 34117482 -116666071 - AluY SINE Alu 0 308 44 389 123 0 0 chr11 34117488 34117545 -116666008 + AluS SINE Alu 1 57 -243 2156 111 0 17 chr11 34117749 34117880 -116665673 + AluSq SINE Alu 5 137 -176 2139 118 0 0 chr11 34117880 34118179 -116665374 + AluSg SINE Alu 1 299 0 2156 111 0 17 chr11 34118179 34118343 -116665210 + AluSq SINE Alu 137 296 -17 467 259 130 0 chr11 34118675 34118806 -116664747 - MIR3 SINE MIR -1 207 60 436 285 66 0 chr11 34119976 34120113 -116663440 + MIR SINE MIR 117 262 0 2197 124 7 0 chr11 34120167 34120465 -116663088 + AluJb SINE Alu 1 300 -12 1037 155 23 17 chr11 34120465 34120639 -116662914 + AluJb SINE Alu 134 308 -4 4016 93 27 30 chr11 34120764 34121358 -116662195 - LTR14B LTR ERVK 0 608 17 2004 107 52 17 chr11 34122031 34122321 -116661232 + AluSq SINE Alu 1 300 -13 374 197 150 39 chr11 34122760 34122887 -116660666 - L2 LINE L2 -4 3309 3169 796 164 8 0 chr11 34123276 34123404 -116660149 - FLAM_A SINE Alu -2 131 3 192 318 0 15 chr11 34123869 34123935 -116659618 - MIR SINE MIR -60 148 84 2597 63 0 0 chr11 34124064 34124364 -116659189 + AluSc SINE Alu 1 300 -9 5352 134 52 25 chr11 34124438 34125382 -116658171 - LTR5 LTR ERVK 0 969 1 469 184 58 0 chr11 34125648 34125735 -116657818 + AluJb SINE Alu 208 299 -13 672 211 146 71 chr11 34125736 34125890 -116657663 - L1M4 LINE L1 -945 5201 5060 1868 160 10 0 chr11 34125890 34126184 -116657369 - AluJb SINE Alu -15 297 1 672 211 146 71 chr11 34126184 34126251 -116657302 - L1M4 LINE L1 -1086 5060 4999 2315 73 0 0 chr11 34126251 34126524 -116657029 - AluY SINE Alu -22 289 17 672 211 146 71 chr11 34126524 34126581 -116656972 - L1M4 LINE L1 -1147 4999 4901 688 165 0 0 chr11 34126608 34126711 -116656842 - AluSg/x SINE Alu -18 292 190 679 125 116 0 chr11 34126706 34126818 -116656735 - AluJo/FLAM SINE Alu -186 126 2 * 1212 171 87 21 chr11 34126846 34127133 -116656420 - L1M4 LINE L1 -1300 4846 4541 1163 111 84 0 chr11 34127133 34127323 -116656230 + L1PA13 LINE L1 5955 6160 -3 754 181 47 72 chr11 34127710 34127781 -116655772 + MER5A DNA MER1_type 1 72 -117 1820 163 13 13 chr11 34127781 34128088 -116655465 + AluJb SINE Alu 1 307 -5 754 181 47 72 chr11 34128088 34128209 -116655344 + MER5A DNA MER1_type 72 188 -1 2125 115 7 0 chr11 34128218 34128504 -116655049 - AluSx SINE Alu -11 301 14 1865 143 52 3 chr11 34128902 34129189 -116654364 - AluJo SINE Alu -11 301 1 442 235 33 82 chr11 34130150 34130333 -116653220 - MER104 DNA Tc2 -5 175 2 665 252 141 66 chr11 34130396 34130773 -116652780 - MLT1L LTR MaLR -210 405 1 2169 129 0 0 chr11 34130882 34131184 -116652369 - AluSg SINE Alu -3 307 6 2114 135 0 3 chr11 34131195 34131484 -116652069 - AluSx SINE Alu -24 288 1 771 172 10 98 chr11 34131628 34131831 -116651722 - AluSg/x SINE Alu -4 308 124 2307 117 3 0 chr11 34133261 34133569 -116649984 - AluSx SINE Alu -1 311 3 280 226 97 21 chr11 34133633 34133726 -116649827 - L1ME4a LINE L1 -38 6083 5984 363 274 9 0 chr11 34133760 34133866 -116649687 - L1MC4 LINE L1 -1 8041 7935 728 98 10 0 chr11 34133866 34133968 -116649585 - FLAM_C SINE Alu -38 105 3 320 275 22 36 chr11 34134967 34135105 -116648448 - MIR SINE MIR -21 241 106 600 126 0 29 chr11 34135170 34135273 -116648280 - AluSg/x SINE Alu 0 310 211 1926 161 0 0 chr11 34136046 34136331 -116647222 - AluJb SINE Alu -27 285 1 404 313 63 13 chr11 34136336 34136524 -116647029 - MIR SINE MIR -65 197 1 2032 118 3 3 chr11 34136874 34137162 -116646391 + AluSx SINE Alu 1 288 -24 205 29 29 29 chr11 34137165 34137200 -116646353 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1769 167 55 6 chr11 34137200 34137547 -116646006 - L1MB7 LINE L1 -7 6177 5814 3078 191 24 40 chr11 34137561 34137937 -116645616 - L1MB4 LINE L1 0 6180 5818 1611 159 36 40 chr11 34137937 34138238 -116645315 - AluJo SINE Alu -12 300 1 3078 191 24 40 chr11 34138238 34138537 -116645016 - L1MB4 LINE L1 -362 5818 5516 775 205 6 0 chr11 34139056 34139212 -116644341 + LTR31 LTR ERV1 387 543 -76 205 152 0 0 chr11 34139214 34139247 -116644306 + A-rich Low_complexity Low_complexity 2 34 0 933 187 23 0 chr11 34139859 34140030 -116643523 - FAM SINE Alu 0 175 1 528 226 0 17 chr11 34140047 34140162 -116643391 + MER81 DNA DNA 2 114 0 182 278 206 54 chr11 34140201 34140345 -116643208 - MIR SINE MIR -4 258 137 2241 109 3 0 chr11 34140345 34140638 -116642915 - AluSq SINE Alu -19 294 1 182 278 206 54 chr11 34140638 34140716 -116642837 - MIR SINE MIR -125 137 2 306 314 0 9 chr11 34141351 34141456 -116642097 - L2 LINE L2 -505 2809 2706 825 239 24 10 chr11 34141890 34142099 -116641454 + MER112 DNA MER1_type 12 223 -37 1949 122 35 29 chr11 34142986 34143297 -116640256 - AluSq SINE Alu 0 313 1 368 291 80 20 chr11 34144180 34144331 -116639222 + MIR SINE MIR 90 249 -13 48 105 0 0 chr11 34144372 34144553 -116639000 + AT_rich Low_complexity Low_complexity 1 181 0 341 247 0 13 chr11 34144591 34144668 -116638885 + L1MA7 LINE L1 6187 6262 -29 1793 157 0 42 chr11 34144669 34144982 -116638571 - AluJb SINE Alu -12 300 1 1669 138 8 23 chr11 34145122 34145383 -116638170 + AluJo SINE Alu 54 310 -2 2139 142 3 0 chr11 34145479 34145782 -116637771 + AluSp SINE Alu 2 305 -8 2278 102 7 0 chr11 34145794 34146097 -116637456 + AluSx SINE Alu 1 305 -7 2074 126 3 0 chr11 34146106 34146399 -116637154 + AluSx SINE Alu 1 294 -18 227 170 0 38 chr11 34146886 34146914 -116636639 + (TTCA)n Simple_repeat Simple_repeat 2 29 -23 2202 116 7 0 chr11 34146914 34147217 -116636336 - AluSx SINE Alu -7 305 1 227 170 0 38 chr11 34147217 34147241 -116636312 + (TTCA)n Simple_repeat Simple_repeat 29 52 0 430 312 124 30 chr11 34147278 34147512 -116636041 - L2 LINE L2 -40 3232 2977 213 39 0 0 chr11 34148800 34148826 -116634727 + (T)n Simple_repeat Simple_repeat 1 26 0 2531 79 0 0 chr11 34149006 34149311 -116634242 + AluSx SINE Alu 1 305 -7 1749 159 3 30 chr11 34149720 34150021 -116633532 + AluJo SINE Alu 1 293 -19 21 89 0 0 chr11 34150115 34150171 -116633382 + AT_rich Low_complexity Low_complexity 1 56 0 2333 88 0 3 chr11 34150286 34150581 -116632972 - AluSg SINE Alu -16 294 1 2558 47 0 3 chr11 34151799 34152095 -116631458 - AluY SINE Alu -16 295 1 2336 88 3 3 chr11 34153022 34153318 -116630235 + AluSx SINE Alu 1 296 -16 333 269 213 31 chr11 34153740 34153900 -116629653 + MIR3 SINE MIR 3 191 -17 271 324 81 7 chr11 34153978 34154114 -116629439 + MIR SINE MIR 73 218 -44 210 150 0 0 chr11 34154406 34154446 -116629107 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 1857 177 10 0 chr11 34154890 34155195 -116628358 + AluSx SINE Alu 1 308 -4 970 162 0 45 chr11 34155212 34155391 -116628162 + AluJo SINE Alu 26 196 -116 1968 124 57 10 chr11 34155438 34155736 -116627817 - AluSx SINE Alu 0 312 1 27 0 0 0 chr11 34155799 34155826 -116627727 + AT_rich Low_complexity Low_complexity 1 27 0 2450 138 52 5 chr11 34156547 34156954 -116626599 + MSTA LTR MaLR 1 426 -2 2322 102 3 0 chr11 34157112 34157417 -116626136 - AluSq SINE Alu -7 306 1 2032 116 193 11 chr11 34157439 34157818 -116625735 + MER83 LTR ERV1 1 448 0 1706 143 27 48 chr11 34157866 34158160 -116625393 - AluJb SINE Alu -24 288 1 1997 123 7 14 chr11 34158205 34158498 -116625055 - AluSx SINE Alu -21 291 1 1369 191 0 0 chr11 34159094 34159324 -116624229 + MER46A DNA MER2_type 1 230 -6 2170 135 0 0 chr11 34161521 34161817 -116621736 - AluSq SINE Alu -17 296 1 251 266 75 12 chr11 34162783 34162921 -116620632 - MIR SINE MIR -51 157 28 2328 83 24 0 chr11 34163369 34163659 -116619894 - AluSx SINE Alu -15 297 1 1780 118 51 67 chr11 34163681 34163996 -116619557 - AluJb SINE Alu -1 311 2 367 127 32 16 chr11 34164081 34164144 -116619409 + MER6 DNA MER2_type -65 4294967294 -146 837 118 65 20 chr11 34164264 34164417 -116619136 - MSTB LTR MaLR -73 353 194 22 0 0 0 chr11 34164430 34164452 -116619101 + AT_rich Low_complexity Low_complexity 1 22 0 1326 154 66 39 chr11 34164453 34164712 -116618841 - AluSx SINE Alu -46 266 1 1078 136 10 45 chr11 34164715 34164914 -116618639 - MSTB LTR MaLR -234 192 1 911 188 5 21 chr11 34164914 34165100 -116618453 + L1MB8 LINE L1 5971 6153 -25 2130 133 0 10 chr11 34165308 34165617 -116617936 - AluSg SINE Alu -4 306 1 1966 142 10 0 chr11 34166490 34166779 -116616774 - AluJb SINE Alu -20 292 1 198 191 0 0 chr11 34167096 34167138 -116616415 + A-rich Low_complexity Low_complexity 1 42 0 186 43 0 0 chr11 34168218 34168241 -116615312 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3536 108 39 25 chr11 34168430 34168950 -116614603 + MER1A DNA MER1_type 1 527 0 406 282 0 0 chr11 34169315 34169418 -116614135 - MER5A DNA MER1_type -83 106 4 2073 115 24 0 chr11 34170237 34170524 -116613029 + AluSq SINE Alu 1 294 -19 2063 96 0 0 chr11 34170532 34170792 -116612761 + AluSc SINE Alu 42 301 -8 1892 234 74 26 chr11 34171257 34171786 -116611767 - MLT1H1 LTR MaLR -1 554 1 477 90 0 0 chr11 34171920 34171987 -116611566 + (TTC)n Simple_repeat Simple_repeat 1 67 0 1388 174 33 26 chr11 34171987 34172257 -116611296 - AluJo SINE Alu -38 274 3 33 25 0 0 chr11 34172706 34172746 -116610807 + AT_rich Low_complexity Low_complexity 1 40 0 856 143 78 0 chr11 34173045 34173199 -116610354 + L1MB7 LINE L1 6003 6168 -16 2181 136 0 13 chr11 34175202 34175336 -116608217 + AluSx SINE Alu 1 135 -177 2190 109 3 0 chr11 34175336 34175619 -116607934 + AluSx SINE Alu 1 284 -28 261 0 0 0 chr11 34175619 34175648 -116607905 + (CA)n Simple_repeat Simple_repeat 2 30 0 2181 136 0 13 chr11 34175648 34175828 -116607725 + AluSx SINE Alu 133 312 0 358 155 0 0 chr11 34176558 34176616 -116606937 - MLT1C LTR MaLR -8 497 440 2413 95 7 0 chr11 34176616 34176963 -116606590 + AluSg SINE Alu 1 349 0 1138 211 88 60 chr11 34176963 34177358 -116606195 - MLT1C LTR MaLR -52 415 5 240 182 52 39 chr11 34177743 34177820 -116605733 + LTR33A LTR ERVL 446 523 0 26 30 0 0 chr11 34177849 34177882 -116605671 + AT_rich Low_complexity Low_complexity 1 33 0 1799 134 0 0 chr11 34177882 34178176 -116605377 + AluSx SINE Alu 30 323 0 1090 160 48 39 chr11 34178245 34178266 -116605287 + L1MC3 LINE L1 6006 6025 -1760 2293 92 7 0 chr11 34178266 34178560 -116604993 - AluSx SINE Alu -16 296 1 1090 160 48 39 chr11 34178560 34178769 -116604784 + L1MC3 LINE L1 6025 6238 -1547 2255 103 10 0 chr11 34178771 34179063 -116604490 + AluSx SINE Alu 3 297 -15 1132 141 0 0 chr11 34179063 34179226 -116604327 + AluSg/x SINE Alu 134 296 -16 519 196 10 0 chr11 34179227 34179329 -116604224 + L1MC3 LINE L1 6224 6326 -1459 800 279 17 86 chr11 34179485 34179730 -116603823 + MER102b DNA MER1_type 1 215 -1213 2232 99 3 10 chr11 34179730 34180034 -116603519 - AluSx SINE Alu -10 302 1 800 279 17 86 chr11 34180034 34180150 -116603403 + MER102b DNA MER1_type 215 337 -4 2536 67 0 6 chr11 34180353 34180666 -116602887 - AluY SINE Alu 0 311 1 1693 221 63 50 chr11 34182219 34182306 -116601247 - MLT1D LTR MaLR 0 505 421 2465 86 0 0 chr11 34182306 34182608 -116600945 - AluSg SINE Alu -8 302 1 1693 221 63 50 chr11 34182608 34182999 -116600554 - MLT1D LTR MaLR -84 421 21 2270 216 96 84 chr11 34183261 34183520 -116600033 + L1MC5 LINE L1 6693 6948 -1013 2013 136 7 0 chr11 34183520 34183807 -116599746 - AluSq SINE Alu -18 295 7 2270 216 96 84 chr11 34183807 34184200 -116599353 + L1MC5 LINE L1 6948 7363 -598 2126 104 0 0 chr11 34184200 34184496 -116599057 + AluY SINE Alu 16 311 0 2270 216 96 84 chr11 34184496 34184800 -116598753 + L1MC5 LINE L1 7363 7662 -299 2006 125 0 22 chr11 34184813 34185132 -116598421 - AluSx SINE Alu 0 312 1 4669 157 45 2 chr11 34185132 34185969 -116597584 - L1MC1 LINE L1 -3 6330 5458 1681 123 4 15 chr11 34185970 34186231 -116597322 + AluSx SINE Alu 54 311 -1 419 103 23 103 chr11 34186519 34186574 -116596979 + L1MA9 LINE L1 6002 6049 -263 1739 194 3 0 chr11 34186574 34186868 -116596685 + AluJo SINE Alu 1 295 -17 419 103 23 103 chr11 34186868 34186899 -116596654 + L1MA9 LINE L1 6049 6081 -231 2393 101 0 0 chr11 34186978 34187275 -116596278 - AluSg SINE Alu -13 297 1 612 142 44 0 chr11 34187466 34187579 -116595974 + L1MB8 LINE L1 6001 6118 -60 2055 143 16 0 chr11 34187946 34188253 -116595300 - AluSx SINE Alu 0 312 1 2219 119 3 0 chr11 34188260 34188563 -116594990 - AluSx SINE Alu -8 304 1 417 234 7 55 chr11 34188951 34189096 -116594457 - MIR SINE MIR -33 229 92 262 328 44 37 chr11 34189110 34189406 -116594147 + L2 LINE L2 2675 2972 -342 420 282 5 74 chr11 34189566 34189768 -116593785 + L2 LINE L2 3107 3294 -19 2455 71 3 0 chr11 34190066 34190360 -116593193 + AluY SINE Alu 1 295 -16 189 0 0 0 chr11 34190360 34190381 -116593172 + (GA)n Simple_repeat Simple_repeat 2 22 0 2133 95 0 0 chr11 34190626 34190899 -116592654 + AluSq SINE Alu 39 311 -2 187 311 121 8 chr11 34191233 34191365 -116592188 - L2 LINE L2 -40 3232 3086 180 77 0 0 chr11 34191566 34191592 -116591961 + (TG)n Simple_repeat Simple_repeat 2 27 0 844 147 51 70 chr11 34191723 34191879 -116591674 - AluJo SINE Alu -159 153 1 2312 91 3 19 chr11 34191884 34192193 -116591360 - AluSq SINE Alu -9 304 1 2381 85 0 0 chr11 34192207 34192500 -116591053 - AluSc SINE Alu -16 293 1 2453 168 16 9 chr11 34192910 34193333 -116590220 - MSTB LTR MaLR 0 426 1 1672 245 29 8 chr11 34193569 34193953 -116589600 + LTR40b LTR ERVL 5 396 -66 2188 101 7 0 chr11 34193963 34194259 -116589294 + AluSx SINE Alu 1 298 -14 379 220 97 112 chr11 34195010 34195278 -116588275 - MLT1J LTR MaLR -50 461 198 2074 134 7 0 chr11 34195290 34195595 -116587958 + AluSq SINE Alu 1 307 -6 336 163 1 51 chr11 34195595 34195697 -116587856 - L1P3 LINE L1 -673 5481 5388 304 245 57 38 chr11 34195710 34195816 -116587737 + L1ME3A LINE L1 6058 6165 -5 189 74 0 0 chr11 34196006 34196033 -116587520 + (CA)n Simple_repeat Simple_repeat 1 27 0 2103 118 17 0 chr11 34196053 34196342 -116587211 + AluSx SINE Alu 1 294 -18 739 274 40 50 chr11 34197022 34197299 -116586254 - MLT1J LTR MaLR 0 511 238 24 53 0 0 chr11 34197582 34197620 -116585933 + AT_rich Low_complexity Low_complexity 1 38 0 214 266 156 37 chr11 34197675 34197784 -116585769 - L2 LINE L2 0 3272 3151 2063 95 53 14 chr11 34197893 34198178 -116585375 - AluSq SINE Alu -17 296 1 1858 105 127 0 chr11 34198561 34198828 -116584725 - AluSx SINE Alu -6 306 6 2111 177 101 40 chr11 34198831 34199334 -116584219 - LTR64 LTR ERVK -24 534 1 450 117 117 0 chr11 34199345 34199422 -116584131 + LTR1 LTR ERV1 83 168 -617 279 0 0 0 chr11 34199422 34199453 -116584100 + (TG)n Simple_repeat Simple_repeat 2 32 0 414 151 14 14 chr11 34199491 34199564 -116583989 + LTR1 LTR ERV1 91 163 -622 378 0 0 0 chr11 34199567 34199609 -116583944 + (TG)n Simple_repeat Simple_repeat 2 43 0 265 262 39 19 chr11 34199836 34199939 -116583614 - L2 LINE L2 0 3272 3168 803 223 34 48 chr11 34200063 34200332 -116583221 - L1ME1 LINE L1 -2 6164 5900 244 143 0 82 chr11 34200398 34200447 -116583106 - Alu SINE Alu -9 292 248 697 191 6 37 chr11 34200464 34200626 -116582927 - L1ME1 LINE L1 -311 5855 5699 2604 154 60 23 chr11 34200643 34201156 -116582397 + L1MB7 LINE L1 5588 6119 -65 2195 99 0 7 chr11 34201159 34201453 -116582100 - AluSx SINE Alu -20 292 1 764 227 121 0 chr11 34201470 34201668 -116581885 - L1ME1 LINE L1 -458 5708 5487 2412 66 0 3 chr11 34202458 34202761 -116580792 + AluY SINE Alu 1 302 -9 2064 118 3 44 chr11 34204080 34204395 -116579158 + AluSq SINE Alu 1 302 -11 895 136 102 0 chr11 34205447 34205623 -116577930 - L1MA4 LINE L1 -14 6286 6093 2468 88 0 0 chr11 34206241 34206548 -116577005 + AluSg SINE Alu 1 307 -3 535 247 114 0 chr11 34206926 34207084 -116576469 + MIR SINE MIR 12 187 -75 2342 78 3 3 chr11 34207313 34207609 -116575944 - AluSp SINE Alu -17 296 1 1392 166 85 7 chr11 34208256 34208527 -116575026 + MER58B DNA MER1_type 49 340 -1 2351 84 3 0 chr11 34208985 34209281 -116574272 - AluY SINE Alu -14 297 1 21 0 0 0 chr11 34209518 34209539 -116574014 + AT_rich Low_complexity Low_complexity 1 21 0 220 367 6 17 chr11 34210100 34210280 -116573273 + (CCA)n Simple_repeat Simple_repeat 1 178 0 776 174 81 50 chr11 34210924 34211088 -116572465 - FAM SINE Alu -5 170 5 603 252 130 108 chr11 34211518 34211955 -116571598 + L2 LINE L2 2867 3313 0 288 227 43 85 chr11 34212636 34212777 -116570776 + MIR SINE MIR 100 234 -28 1902 124 16 42 chr11 34213361 34213667 -116569886 - AluSx SINE Alu -14 298 1 2158 97 3 31 chr11 34214443 34214762 -116568791 + AluY SINE Alu 1 310 -1 1923 155 3 0 chr11 34214775 34215065 -116568488 + AluSx SINE Alu 20 310 -2 25 51 0 0 chr11 34217157 34217196 -116566357 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr11 34217627 34217650 -116565903 + AT_rich Low_complexity Low_complexity 1 23 0 286 328 107 15 chr11 34217933 34218064 -116565489 + MIR3 SINE MIR 47 189 -19 226 313 45 0 chr11 34219191 34219258 -116564295 + MIR SINE MIR 2 71 -191 403 167 83 12 chr11 34219288 34219372 -116564181 + MIR SINE MIR 171 260 -2 201 94 0 0 chr11 34219634 34219666 -116563887 + (A)n Simple_repeat Simple_repeat 1 32 0 349 214 150 14 chr11 34221534 34221674 -116561879 - L1ME4a LINE L1 -1 6120 5962 261 217 250 0 chr11 34221721 34221841 -116561712 - L1ME4a LINE L1 -260 5861 5712 1679 197 27 0 chr11 34221925 34222225 -116561328 + AluJb SINE Alu 1 308 -4 1584 154 60 15 chr11 34222265 34222531 -116561022 - AluJb SINE Alu -22 290 13 2263 97 0 3 chr11 34222984 34223284 -116560269 - AluSg SINE Alu -11 299 1 180 0 0 0 chr11 34223293 34223313 -116560240 + (T)n Simple_repeat Simple_repeat 1 20 0 269 245 0 0 chr11 34223514 34223567 -116559986 + MIR SINE MIR 81 133 -75 649 231 58 0 chr11 34224420 34224599 -116558954 - MER58A DNA MER1_type 0 224 35 243 270 0 48 chr11 34224647 34224710 -116558843 + L2 LINE L2 3213 3272 0 196 259 224 35 chr11 34224774 34224890 -116558663 + MIR SINE MIR 3 140 -122 1650 99 144 4 chr11 34224941 34225204 -116558349 - AluSg SINE Alu 0 300 1 2910 0 0 0 chr11 34225213 34225524 -116558029 - AluYa5 SINE Alu 0 311 1 202 327 190 15 chr11 34225551 34225756 -116557797 + L3b LINE CR1 1339 1579 -4 1988 102 57 78 chr11 34225898 34226270 -116557283 - THE1B LTR MaLR 0 364 1 11108 86 47 6 chr11 34226270 34227788 -116555765 - THE1B-int LTR MaLR 0 1580 1 2329 126 22 22 chr11 34227788 34227914 -116555639 - THE1B LTR MaLR 0 364 239 2362 75 0 33 chr11 34227914 34228221 -116555332 - AluY SINE Alu -14 297 1 2329 126 22 22 chr11 34228221 34228458 -116555095 - THE1B LTR MaLR -124 240 1 1618 178 50 3 chr11 34230601 34230899 -116552654 + AluJb SINE Alu 1 312 0 289 266 0 0 chr11 34233722 34233786 -116549767 - L3 LINE CR1 -69 1508 1445 231 397 95 4 chr11 34233810 34234042 -116549511 - L2 LINE L2 -1313 2001 1749 1045 165 0 6 chr11 34234606 34234776 -116548777 - FAM SINE Alu -5 170 2 574 365 80 25 chr11 34234838 34235436 -116548117 - L2 LINE L2 -18 3295 2665 504 215 120 19 chr11 34235485 34235643 -116547910 + MER112 DNA MER1_type 82 255 -5 459 362 36 7 chr11 34235700 34235979 -116547574 - L2 LINE L2 -731 2583 2297 5806 119 33 13 chr11 34236017 34236679 -116546874 - L1PA16 LINE L1 -9 6157 5458 2045 151 3 0 chr11 34236679 34236984 -116546569 - AluSx SINE Alu -6 306 1 5806 119 33 13 chr11 34236984 34237424 -116546129 - L1PA16 LINE L1 -708 5458 5028 1704 183 0 7 chr11 34237523 34237802 -116545751 + AluJo SINE Alu 3 279 -33 713 194 6 0 chr11 34237848 34238023 -116545530 + GA-rich Low_complexity Low_complexity 1 176 0 1006 243 100 82 chr11 34238171 34238546 -116545007 - MLT1F1 LTR MaLR -37 530 143 1727 72 0 9 chr11 34238546 34238769 -116544784 + AluY SINE Alu 87 307 -4 1006 243 100 82 chr11 34238769 34238915 -116544638 - MLT1F1 LTR MaLR -424 143 1 7036 110 13 6 chr11 34238968 34240819 -116542734 + L1PA8 LINE L1 4301 6172 0 2003 132 7 0 chr11 34241114 34241437 -116542116 - AluSg SINE Alu 0 325 1 1399 216 20 10 chr11 34241485 34241786 -116541767 - AluJb SINE Alu -8 304 1 764 239 31 89 chr11 34241983 34242187 -116541366 + L1ME LINE L1 5414 5595 -526 1792 122 32 32 chr11 34242187 34242502 -116541051 + AluSc SINE Alu 1 315 0 764 239 31 89 chr11 34242502 34242604 -116540949 + L1ME LINE L1 5595 5701 -420 293 138 0 52 chr11 34242694 34242752 -116540801 + L1M4 LINE L1 5563 5617 -557 * 2934 63 0 18 chr11 34242750 34243133 -116540420 + L1PA6 LINE L1 5586 5961 -193 5092 42 0 2 chr11 34243135 34243764 -116539789 - L1P LINE L1 -3719 2427 1798 13096 34 0 0 chr11 34243764 34246116 -116537437 + L1PA4 LINE L1 3792 6155 0 3335 279 85 39 chr11 34246201 34247551 -116536002 + L1MEc LINE L1 44 1508 -4888 1979 83 65 0 chr11 34247551 34247827 -116535726 - AluSg SINE Alu -16 294 1 3335 279 85 39 chr11 34247827 34248387 -116535166 + L1MEc LINE L1 1508 2041 -4355 342 189 0 189 chr11 34248396 34248447 -116535106 + MER58A DNA MER1_type 2 61 -280 217 0 61 0 chr11 34248447 34248480 -116535073 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 342 189 0 189 chr11 34248480 34248495 -116535058 + MER58A DNA MER1_type 61 43 -298 2026 121 7 0 chr11 34248495 34248775 -116534778 - AluSx SINE Alu -30 282 1 342 189 0 189 chr11 34248775 34248818 -116534735 + MER58A DNA MER1_type 42 91 -133 421 145 60 0 chr11 34248820 34248903 -116534650 + L1MB4 LINE L1 6093 6180 0 2410 206 22 50 chr11 34248997 34249677 -116533876 + L1MEc LINE L1 2341 3001 -3214 230 71 0 0 chr11 34249677 34249705 -116533848 + Alu SINE Alu 87 114 -188 599 66 74 0 chr11 34249705 34249826 -116533727 + GA-rich Low_complexity Low_complexity 5 134 0 725 152 101 29 chr11 34249835 34249973 -116533580 + AluJb SINE Alu 135 282 -30 210 171 0 0 chr11 34249982 34250023 -116533530 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 1633 198 36 68 chr11 34250062 34250351 -116533202 - L1M4 LINE L1 -3213 2933 2636 1958 150 0 0 chr11 34250351 34250658 -116532895 - AluSx SINE Alu -5 307 1 1633 198 36 68 chr11 34250658 34250735 -116532818 - L1M4 LINE L1 -3510 2636 2558 204 40 0 0 chr11 34250735 34250760 -116532793 + (TG)n Simple_repeat Simple_repeat 2 26 0 1633 198 36 68 chr11 34250760 34250861 -116532692 - L1M4 LINE L1 -3588 2558 2480 894 217 38 4 chr11 34250915 34251178 -116532375 + L1MEc LINE L1 2997 3268 -2947 992 97 0 0 chr11 34251182 34251316 -116532237 - AluSc SINE Alu -7 302 169 697 226 41 41 chr11 34251332 34251575 -116531978 + L1MEc LINE L1 3263 3505 -2710 2950 179 37 13 chr11 34251579 34252121 -116531432 - MER68 LTR ERV1 -7 555 1 2673 233 92 36 chr11 34252128 34252973 -116530580 + L1MEc LINE L1 3506 4302 -1913 653 236 0 0 chr11 34252973 34253096 -116530457 + FLAM_A SINE Alu 1 123 -10 2673 233 92 36 chr11 34253096 34253778 -116529775 + L1MEc LINE L1 4302 5139 -1076 543 265 77 6 chr11 34254147 34254317 -116529236 - MIR SINE MIR -78 184 3 38 68 0 0 chr11 34254329 34254402 -116529151 + AT_rich Low_complexity Low_complexity 1 73 0 202 220 0 0 chr11 34254780 34254830 -116528723 + (TTA)n Simple_repeat Simple_repeat 2 51 0 933 316 103 66 chr11 34254934 34255140 -116528413 + L2 LINE L2 1528 1725 -1589 2259 92 23 0 chr11 34255140 34255443 -116528110 - AluSg SINE Alu 0 310 1 933 316 103 66 chr11 34255443 34255732 -116527821 + L2 LINE L2 1725 2002 -1312 228 67 0 0 chr11 34255732 34255762 -116527791 + (CA)n Simple_repeat Simple_repeat 2 31 0 933 316 103 66 chr11 34255762 34256462 -116527091 + L2 LINE L2 2002 2768 -546 2276 105 7 0 chr11 34256604 34256909 -116526644 - AluSc SINE Alu -2 307 1 2081 103 4 4 chr11 34256998 34257279 -116526274 + AluSx SINE Alu 1 281 -31 318 325 65 8 chr11 34257454 34257577 -116525976 + L2 LINE L2 3179 3308 -5 2357 95 3 0 chr11 34257577 34257881 -116525672 - AluSx SINE Alu -7 305 1 2115 86 7 4 chr11 34258868 34259148 -116524405 + AluY SINE Alu 1 281 -30 240 35 0 0 chr11 34259153 34259182 -116524371 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 31 0 0 0 chr11 34259533 34259564 -116523989 + AT_rich Low_complexity Low_complexity 1 31 0 264 167 0 0 chr11 34259828 34259876 -116523677 + (TA)n Simple_repeat Simple_repeat 1 48 0 29 28 0 0 chr11 34260063 34260099 -116523454 + AT_rich Low_complexity Low_complexity 1 36 0 302 245 49 35 chr11 34261035 34261178 -116522375 - L1ME4a LINE L1 -96 6025 5881 3665 109 78 49 chr11 34261500 34262214 -116521339 - Tigger3b DNA MER2_type 0 1232 498 3106 82 48 0 chr11 34262174 34262612 -116520941 + L1PA15 LINE L1 5699 6157 -8 1123 121 12 0 chr11 34262615 34262788 -116520765 - L1MB4 LINE L1 -17 6163 5989 1465 231 55 28 chr11 34262797 34263195 -116520358 - L1ME1 LINE L1 -67 6099 5691 3124 139 35 26 chr11 34263200 34263412 -116520141 - Tigger3b DNA MER2_type -2483 545 336 2383 97 3 0 chr11 34263412 34263721 -116519832 - AluSg SINE Alu 0 310 1 3124 139 35 26 chr11 34263721 34264047 -116519506 - Tigger3b DNA MER2_type -2692 336 2 1397 244 109 35 chr11 34264311 34264832 -116518721 - HAL1 LINE L1 -566 1941 1382 1573 246 182 18 chr11 34264839 34265220 -116518333 - HAL1 LINE L1 -1178 1329 1012 2319 152 62 0 chr11 34265220 34265621 -116517932 - MSTB LTR MaLR 0 426 1 1573 246 182 18 chr11 34265621 34265910 -116517643 - HAL1 LINE L1 -1495 1012 549 392 264 73 45 chr11 34265949 34266127 -116517426 + MER63A DNA MER1_type 27 209 -1 411 254 139 29 chr11 34266165 34266338 -116517215 - HAL1 LINE L1 -2044 463 272 279 204 91 0 chr11 34266373 34266461 -116517092 - HAL1 LINE L1 -2312 195 100 308 280 112 0 chr11 34266580 34266687 -116516866 - L2 LINE L2 -1 3312 3194 2242 105 3 0 chr11 34266687 34266983 -116516570 - AluSq SINE Alu -16 297 1 260 154 0 0 chr11 34267006 34267045 -116516508 + U2 snRNA snRNA 1 39 -149 332 293 120 30 chr11 34268390 34268557 -116514996 + MIR3 SINE MIR 19 200 -8 2783 258 83 74 chr11 34268973 34269908 -116513645 - MER45C DNA AcHobo -9 944 1 1289 119 0 0 chr11 34270288 34270493 -116513060 + AluSg/x SINE Alu 133 337 0 234 91 0 0 chr11 34271216 34271249 -116512304 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 248 191 0 0 chr11 34271992 34272034 -116511519 - L2 LINE L2 -7 3265 3224 188 333 0 0 chr11 34272002 34272068 -116511485 - MIR SINE MIR -11 251 186 * 2020 127 3 3 chr11 34272288 34272606 -116510947 - AluSx SINE Alu 0 318 1 440 323 42 61 chr11 34273561 34273951 -116509602 - L2 LINE L2 -238 3034 2660 2370 49 0 7 chr11 34274197 34274511 -116509042 - AluY SINE Alu 0 312 1 297 278 202 71 chr11 34274587 34274939 -116508614 + LTR67 LTR ERVL 154 551 -6 261 344 123 0 chr11 34275108 34275271 -116508282 - L2 LINE L2 -1096 2218 2036 872 282 52 8 chr11 34275628 34275876 -116507677 + LTR33 LTR ERVL 6 264 -257 1228 206 5 0 chr11 34275876 34276094 -116507459 + AluJo SINE Alu 26 244 -68 210 71 0 0 chr11 34276156 34276184 -116507369 + (A)n Simple_repeat Simple_repeat 1 28 0 808 250 22 52 chr11 34276186 34276458 -116507095 + LTR33 LTR ERVL 258 521 0 187 296 139 61 chr11 34276814 34277044 -116506509 - L2 LINE L2 -672 2642 2395 266 265 105 50 chr11 34277784 34277965 -116505588 - MLT1L LTR MaLR -1 614 424 382 260 4 3 chr11 34278059 34278155 -116505398 - MLT1L LTR MaLR -329 259 149 234 0 0 0 chr11 34278362 34278388 -116505165 + (A)n Simple_repeat Simple_repeat 1 26 0 29 28 0 0 chr11 34278593 34278629 -116504924 + AT_rich Low_complexity Low_complexity 1 36 0 1762 158 10 17 chr11 34278675 34278966 -116504587 + AluJo SINE Alu 1 289 -23 2931 81 15 0 chr11 34279438 34279844 -116503709 - L1PA5 LINE L1 -5 6149 5738 41348 60 6 2 chr11 34279845 34285943 -116497610 - L1PA5 LINE L1 -29 6125 1 556 259 24 35 chr11 34286041 34286201 -116497352 + MIR SINE MIR 4 176 -32 213 196 65 0 chr11 34286212 34286258 -116497295 - L2 LINE L2 -4 3309 3261 4552 92 24 8 chr11 34287458 34288125 -116495428 - L1MA2 LINE L1 0 6304 5627 2449 74 0 0 chr11 34288373 34288671 -116494882 + AluY SINE Alu 1 298 -13 186 43 0 0 chr11 34289531 34289554 -116493999 + (A)n Simple_repeat Simple_repeat 1 23 0 2008 126 31 0 chr11 34290201 34290487 -116493066 + AluSx SINE Alu 1 295 -17 1509 127 24 0 chr11 34291164 34291417 -116492136 + L1MC1 LINE L1 5254 5512 -832 699 135 36 0 chr11 34291417 34291514 -116492039 + L1MC1 LINE L1 6201 6315 -18 36 0 0 0 chr11 34291517 34291553 -116492000 + AT_rich Low_complexity Low_complexity 1 36 0 1167 257 136 15 chr11 34291839 34292295 -116491258 - LTR33 LTR ERVL 0 521 11 575 305 27 42 chr11 34292556 34292818 -116490735 - MLT1L LTR MaLR 0 615 358 754 336 129 19 chr11 34293045 34293417 -116490136 + L2 LINE L2 2857 3269 -3 21 0 0 0 chr11 34293646 34293667 -116489886 + AT_rich Low_complexity Low_complexity 1 21 0 1430 180 8 4 chr11 34294683 34294933 -116488620 + AluJo SINE Alu 49 299 -13 185 235 20 20 chr11 34295261 34295312 -116488241 + L2 LINE L2 3217 3267 -5 2287 104 0 13 chr11 34295804 34296112 -116487441 + AluSg SINE Alu 1 304 -6 2185 125 3 0 chr11 34296129 34296434 -116487119 + AluSq SINE Alu 1 306 -7 461 273 186 5 chr11 34296447 34296667 -116486886 + MIR SINE MIR 3 262 0 2267 98 3 3 chr11 34296735 34297031 -116486522 + AluSg SINE Alu 1 296 -14 183 42 0 0 chr11 34297042 34297066 -116486487 + (CA)n Simple_repeat Simple_repeat 2 25 0 2177 114 3 3 chr11 34297489 34297796 -116485757 - AluSx SINE Alu -5 307 1 24 0 0 0 chr11 34300052 34300076 -116483477 + AT_rich Low_complexity Low_complexity 1 24 0 1433 158 4 0 chr11 34301219 34301453 -116482100 - MER46A DNA MER2_type -1 235 1 831 247 40 13 chr11 34301820 34302047 -116481506 - L2 LINE L2 0 3313 3081 207 0 0 0 chr11 34302175 34302198 -116481355 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1577 176 0 18 chr11 34302209 34302481 -116481072 - AluJo SINE Alu -41 271 5 352 279 106 11 chr11 34302567 34302832 -116480721 - L1ME4a LINE L1 -240 5881 5592 1434 182 26 11 chr11 34302850 34303119 -116480434 + AluJb SINE Alu 18 290 -22 240 167 50 0 chr11 34303130 34303190 -116480363 - L1ME4a LINE L1 -675 5567 5505 189 0 0 0 chr11 34303282 34303303 -116480250 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 1549 288 164 36 chr11 34303321 34303851 -116479702 - L2 LINE L2 0 3313 2852 2531 70 0 0 chr11 34303851 34304152 -116479401 - AluSc SINE Alu -8 301 1 1549 288 164 36 chr11 34304152 34304604 -116478949 - L2 LINE L2 -461 2852 2183 30 0 0 0 chr11 34304978 34305008 -116478545 + AT_rich Low_complexity Low_complexity 1 30 0 2509 233 49 10 chr11 34305597 34306823 -116476730 + L1MC4 LINE L1 6468 7898 -144 262 324 0 19 chr11 34306966 34307071 -116476482 + L1MEd LINE L1 103 205 -5914 830 267 64 63 chr11 34307345 34307861 -116475692 + L1MEd LINE L1 511 1030 -5089 2255 79 0 0 chr11 34307861 34308141 -116475412 + AluY SINE Alu 16 295 -16 830 267 64 63 chr11 34308141 34308310 -116475243 + L1MEd LINE L1 1030 1197 -4922 2329 118 36 36 chr11 34308434 34308567 -116474986 - L1MC1 LINE L1 0 6333 6201 2202 109 104 15 chr11 34308567 34308960 -116474593 + MSTA LTR MaLR 1 428 0 2329 118 36 36 chr11 34308960 34309180 -116474373 - L1MC1 LINE L1 -132 6201 5977 2106 117 3 3 chr11 34309180 34309478 -116474075 - AluSq SINE Alu -15 298 1 2329 118 36 36 chr11 34309478 34309540 -116474013 - L1MC1 LINE L1 -355 5978 5917 1903 157 45 22 chr11 34309540 34309899 -116473654 - L1MC1 LINE L1 -743 5403 5074 2575 62 0 0 chr11 34309899 34310204 -116473349 + AluY SINE Alu 1 305 -6 1903 157 45 22 chr11 34310204 34310384 -116473169 - L1MC1 LINE L1 -1072 5074 4900 29 70 0 0 chr11 34310627 34310684 -116472869 + AT_rich Low_complexity Low_complexity 1 57 0 182 220 60 40 chr11 34310684 34310734 -116472819 - MIR3 SINE MIR -13 195 145 224 404 21 11 chr11 34310891 34310985 -116472568 - MIR3 SINE MIR -52 156 62 194 243 114 43 chr11 34311251 34311321 -116472232 + L2 LINE L2 3150 3224 -48 7320 43 1 1 chr11 34311672 34312582 -116470971 + L1P LINE L1 3614 4523 -1623 1063 96 0 0 chr11 34312589 34312735 -116470818 + L1PA6 LINE L1 6004 6149 -5 2270 105 0 0 chr11 34313221 34313516 -116470037 + AluSx SINE Alu 3 297 -15 27 0 0 0 chr11 34314080 34314107 -116469446 + AT_rich Low_complexity Low_complexity 1 27 0 1810 138 31 31 chr11 34314569 34314859 -116468694 - AluJb SINE Alu -22 290 1 1565 165 0 20 chr11 34315012 34315267 -116468286 - AluJo SINE Alu -62 250 1 1119 232 65 96 chr11 34315275 34315607 -116467946 - L1MC4 LINE L1 -88 7954 7613 1869 124 4 0 chr11 34315607 34315872 -116467681 - AluSx SINE Alu -3 309 44 1119 232 65 96 chr11 34315872 34315927 -116467626 - L1MC4 LINE L1 -429 7613 7558 1362 113 0 5 chr11 34315927 34316131 -116467422 - L1PA15 LINE L1 0 6165 5963 1119 232 65 96 chr11 34316131 34316145 -116467408 - L1MC4 LINE L1 -484 7558 7545 2735 39 0 0 chr11 34316145 34316456 -116467097 - AluY SINE Alu 0 311 1 1119 232 65 96 chr11 34316456 34316728 -116466825 - L1MC4 LINE L1 -497 7545 7300 595 204 61 8 chr11 34316793 34316925 -116466628 + L2 LINE L2 3171 3309 -4 260 399 53 15 chr11 34316920 34317053 -116466500 + L2 LINE L2 3112 3249 -23 * 36 62 0 0 chr11 34317144 34317208 -116466345 + AT_rich Low_complexity Low_complexity 1 64 0 3209 35 13 2 chr11 34317612 34318008 -116465545 + L1PA5 LINE L1 5738 6137 -17 207 0 0 0 chr11 34318012 34318035 -116465518 + (TA)n Simple_repeat Simple_repeat 2 24 0 550 295 24 24 chr11 34318598 34318764 -116464789 + MIR3 SINE MIR 15 180 -28 24 0 0 0 chr11 34318898 34318922 -116464631 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr11 34318968 34318989 -116464564 + AT_rich Low_complexity Low_complexity 1 21 0 673 203 8 0 chr11 34319158 34319286 -116464267 - FLAM_A SINE Alu -3 130 2 1361 157 97 41 chr11 34319551 34319838 -116463715 + AluJo SINE Alu 1 302 0 270 351 94 10 chr11 34320741 34320943 -116462610 - L3b LINE CR1 -87 1496 1278 1964 146 3 3 chr11 34321231 34321519 -116462034 - AluJb SINE Alu -24 288 1 198 118 0 0 chr11 34321734 34321768 -116461785 + (CAA)n Simple_repeat Simple_repeat 1 34 0 732 243 147 22 chr11 34322030 34322127 -116461426 - HAL1 LINE L1 -115 2392 2308 4428 193 113 100 chr11 34322127 34323860 -116459693 + MER52A LTR ERV1 1 1755 0 732 243 147 22 chr11 34323860 34324075 -116459478 - HAL1 LINE L1 -199 2308 2041 393 309 41 36 chr11 34324814 34325008 -116458545 + MER110-int LTR ERV1 2117 2311 -4490 564 280 50 80 chr11 34325357 34325657 -116457896 + MER110-int LTR ERV1 180 470 -4177 11637 206 18 11 chr11 34326076 34327427 -116456126 - L1 LINE L1 -1038 5108 3729 1912 156 10 0 chr11 34327427 34327728 -116455825 - AluSx SINE Alu -8 304 1 11637 206 18 11 chr11 34327728 34328955 -116454598 - L1 LINE L1 -2417 3729 2512 804 208 11 0 chr11 34328953 34329131 -116454422 + L1PB1 LINE L1 5090 5269 -877 * 5397 92 39 0 chr11 34329133 34329903 -116453650 + L1PB1 LINE L1 5352 6151 0 767 323 43 21 chr11 34329911 34330286 -116453267 + MER110-int LTR ERV1 3078 3460 -3341 2011 107 52 60 chr11 34330295 34330697 -116452856 + L1MA7 LINE L1 5892 6290 -1 478 314 21 37 chr11 34331219 34331410 -116452143 + MER110-int LTR ERV1 3531 3718 -3083 1651 295 92 36 chr11 34331559 34332342 -116451211 + MER110-int LTR ERV1 1591 2417 -2230 1362 202 32 9 chr11 34332890 34333187 -116450366 + MER58B DNA MER1_type 37 340 -1 384 226 20 98 chr11 34333187 34333391 -116450162 + MER110-int LTR ERV1 3024 3211 -1436 781 278 19 10 chr11 34333411 34333616 -116449937 + MER110-int LTR ERV1 4362 4568 -79 249 33 0 0 chr11 34333624 34333654 -116449899 + (CA)n Simple_repeat Simple_repeat 2 31 0 787 229 73 128 chr11 34333844 34334291 -116449262 + MER110 LTR ERV1 80 483 -8 380 288 104 7 chr11 34334370 34334658 -116448895 - L1M4 LINE L1 -1198 4948 4633 1994 134 3 3 chr11 34334695 34334987 -116448566 - AluJo SINE Alu -12 300 9 2183 122 38 24 chr11 34335833 34336203 -116447350 - THE1C LTR MaLR 0 375 1 594 292 153 19 chr11 34336327 34336752 -116446801 + L1MCc LINE L1 -293 188 -5938 410 289 44 29 chr11 34337025 34337256 -116446297 + L1MCc LINE L1 652 865 -5260 1808 208 60 25 chr11 34337388 34337873 -116445680 + L1MCc LINE L1 734 1235 -5307 3514 236 50 11 chr11 34337875 34338907 -116444646 + L1M4 LINE L1 3328 4400 -1746 738 218 11 63 chr11 34338904 34339113 -116444440 + L1ME2 LINE L1 5965 6165 -1 * 2167 124 0 20 chr11 34339151 34339457 -116444096 - AluSx SINE Alu -12 300 1 2449 67 0 13 chr11 34339729 34340029 -116443524 - AluY SINE Alu -15 296 1 1094 257 108 43 chr11 34340122 34340539 -116443014 - MLT1L LTR MaLR 0 615 172 903 301 21 0 chr11 34340905 34341141 -116442412 - MIR SINE MIR -19 243 3 26 0 0 0 chr11 34341964 34341990 -116441563 + AT_rich Low_complexity Low_complexity 1 26 0 21 71 0 0 chr11 34342051 34342093 -116441460 + AT_rich Low_complexity Low_complexity 1 42 0 510 348 41 12 chr11 34342686 34342930 -116440623 + MER102a DNA MER1_type 59 309 -21 1756 162 33 24 chr11 34343271 34343605 -116439948 + MER44D DNA MER2_type 2 608 -1 209 206 0 103 chr11 34343808 34343876 -116439677 + MIR3 SINE MIR 148 208 0 951 253 67 42 chr11 34344276 34345095 -116438458 + L1MCc LINE L1 1215 3519 -3125 * 3351 190 183 129 chr11 34345093 34345463 -116438090 - L1MD3 LINE L1 -231 7764 7415 326 227 62 94 chr11 34345463 34345591 -116437962 - MLT1L LTR MaLR -443 124 1 3351 190 183 129 chr11 34345591 34345705 -116437848 - L1MD3 LINE L1 -580 7415 7309 2224 98 0 0 chr11 34345705 34346002 -116437551 - AluSg1 SINE Alu -12 297 1 3351 190 183 129 chr11 34346002 34346102 -116437451 - L1MD3 LINE L1 -686 7309 7216 1782 181 3 0 chr11 34346102 34346390 -116437163 + AluJo SINE Alu 1 289 -23 3351 190 183 129 chr11 34346390 34346823 -116436730 - L1MD3 LINE L1 -779 7216 6808 2206 103 0 0 chr11 34346823 34347137 -116436416 - AluSx SINE Alu 0 314 1 5089 93 19 8 chr11 34347144 34347872 -116435681 - L1PA11 LINE L1 0 6174 5439 3351 190 183 129 chr11 34347872 34348531 -116435022 - L1MD3 LINE L1 -1192 6803 5852 467 233 124 63 chr11 34348534 34348882 -116434671 - L1M4c LINE L1 -4617 1765 1368 40860 66 4 5 chr11 34348920 34352558 -116430995 + L1PA5 LINE L1 1 3635 -2519 2073 22 0 0 chr11 34352558 34352787 -116430766 - SVA Other Other -2 1384 1156 40860 66 4 5 chr11 34352787 34355072 -116428481 + L1PA5 LINE L1 3635 5920 -234 447 106 0 0 chr11 34355072 34355138 -116428415 + (TA)n Simple_repeat Simple_repeat 2 67 0 311 228 29 25 chr11 34355146 34355258 -116428295 - AluSp SINE Alu -111 192 96 15879 151 22 16 chr11 34355334 34355364 -116428189 - L1MA3 LINE L1 0 7724 7696 387 0 0 0 chr11 34355364 34355407 -116428146 + (TG)n Simple_repeat Simple_repeat 2 44 0 15879 151 22 16 chr11 34355407 34355466 -116428087 - L1MA3 LINE L1 -28 7696 7639 2020 126 10 17 chr11 34355466 34355767 -116427786 + AluSx SINE Alu 1 299 -13 15879 151 22 16 chr11 34355767 34359787 -116423766 - L1MA3 LINE L1 -85 7639 3594 6701 73 2 0 chr11 34359802 34361427 -116422126 - L1PA7 LINE L1 -11 6143 4514 1526 73 24 69 chr11 34361427 34361674 -116421879 + L1P LINE L1 2763 2998 -3148 18905 94 15 23 chr11 34361681 34366211 -116417342 - L1PA7 LINE L1 -1635 4511 11 22095 118 51 16 chr11 34366218 34367997 -116415556 - L1MA3 LINE L1 -3955 3610 1894 2376 85 0 3 chr11 34367997 34368302 -116415251 - AluSg SINE Alu -6 304 1 22095 118 51 16 chr11 34368302 34369990 -116413563 - L1MA3 LINE L1 -5671 1894 22 262 264 169 20 chr11 34369993 34370141 -116413412 - MLT1F LTR MaLR -33 509 340 230 203 186 0 chr11 34370287 34370346 -116413207 - MLT1I LTR MaLR -241 168 99 292 267 34 48 chr11 34370692 34370838 -116412715 - L1ME LINE L1 -622 5499 5356 1539 173 17 50 chr11 34370943 34371244 -116412309 - AluJo SINE Alu -21 291 1 1769 159 9 55 chr11 34371418 34371596 -116411957 - AluJb SINE Alu 0 312 154 2248 117 0 3 chr11 34371596 34371896 -116411657 - AluSx SINE Alu -11 301 3 1769 159 9 55 chr11 34371896 34372044 -116411509 - AluJb SINE Alu -158 154 1 342 209 79 79 chr11 34372225 34372364 -116411189 - L1ME LINE L1 -1436 4710 4572 550 250 85 26 chr11 34372377 34372649 -116410904 + L1MEd LINE L1 914 1201 -4918 448 313 216 3 chr11 34372650 34372941 -116410612 + L1MEd LINE L1 1216 1568 -4561 2395 102 0 0 chr11 34373011 34373316 -116410237 - AluSg SINE Alu -3 307 3 2286 84 0 0 chr11 34373386 34373670 -116409883 + AluSg SINE Alu 1 284 -26 328 240 0 62 chr11 34373675 34373771 -116409782 + L1MC4 LINE L1 6614 6703 -1339 301 260 0 62 chr11 34373767 34373863 -116409690 - L1MC4 LINE L1 -1339 6703 6614 * 302 273 23 23 chr11 34373869 34373957 -116409596 - L1MC4 LINE L1 -1341 6701 6614 334 272 0 22 chr11 34373977 34374069 -116409484 - L1MC4 LINE L1 -1339 6703 6614 332 255 0 43 chr11 34374105 34374199 -116409354 - L1MC4 LINE L1 -1339 6703 6614 332 255 0 43 chr11 34374209 34374303 -116409250 - L1MC4 LINE L1 -1339 6703 6614 332 255 0 43 chr11 34374313 34374407 -116409146 - L1MC4 LINE L1 -1339 6703 6614 332 255 0 43 chr11 34374417 34374511 -116409042 - L1MC4 LINE L1 -1339 6703 6614 345 261 0 22 chr11 34374519 34374611 -116408942 - L1MC4 LINE L1 -1339 6703 6614 980 244 21 42 chr11 34375084 34375416 -116408137 + L1ME2 LINE L1 5665 5989 -175 24 67 0 0 chr11 34375445 34375490 -116408063 + AT_rich Low_complexity Low_complexity 1 45 0 2299 162 71 53 chr11 34375614 34376107 -116407446 - MLT1D LTR MaLR -3 502 1 21 36 0 0 chr11 34377136 34377164 -116406389 + AT_rich Low_complexity Low_complexity 1 28 0 1908 121 0 4 chr11 34377452 34377716 -116405837 - AluSx SINE Alu -1 311 49 3439 230 46 22 chr11 34378901 34379778 -116403775 - L1MD2 LINE L1 -10 6349 5452 2410 150 0 0 chr11 34379909 34380270 -116403283 - MLT2D LTR ERVL -46 368 8 22978 80 7 6 chr11 34380761 34383879 -116399674 + L1PA5 LINE L1 2 3121 -3025 15996 38 0 0 chr11 34383888 34386617 -116396936 + L1PA5 LINE L1 3438 6154 0 22 35 0 0 chr11 34386677 34386706 -116396847 + AT_rich Low_complexity Low_complexity 1 29 0 280 353 10 0 chr11 34386726 34386828 -116396725 + L1MEd LINE L1 534 636 -5483 995 197 0 0 chr11 34386828 34387006 -116396547 + FRAM SINE Alu 1 175 -1 812 262 58 4 chr11 34387009 34387284 -116396269 + L1ME LINE L1 5298 5587 -575 1697 248 68 37 chr11 34387311 34387824 -116395729 - MLT1H LTR MaLR -18 531 3 198 376 60 7 chr11 34387826 34387975 -116395578 + L2 LINE L2 2923 3079 -193 910 242 118 48 chr11 34388121 34388593 -116394960 - MLT1H LTR MaLR -8 547 21 242 361 21 7 chr11 34388805 34388949 -116394604 + MLT1-int LTR MaLR 399 544 -827 289 270 27 0 chr11 34389268 34389342 -116394211 + MLT1-int LTR MaLR 804 879 -492 347 235 25 0 chr11 34390227 34390308 -116393245 + MLT1H1 LTR MaLR 463 545 -10 333 221 126 16 chr11 34390335 34390462 -116393091 - HAL1 LINE L1 -1556 951 811 692 256 101 48 chr11 34390462 34390899 -116392654 + L1MC4 LINE L1 7566 8025 -17 3499 144 60 26 chr11 34390912 34391594 -116391959 + L1MB8 LINE L1 5468 6172 -6 1586 174 28 28 chr11 34391638 34391925 -116391628 + AluJo SINE Alu 9 295 -17 411 293 50 92 chr11 34391925 34392325 -116391228 - HAL1 LINE L1 -1703 804 422 238 288 215 18 chr11 34392445 34392608 -116390945 - HAL1 LINE L1 -2311 196 2 25 0 0 0 chr11 34392785 34392810 -116390743 + AT_rich Low_complexity Low_complexity 1 25 0 194 349 17 114 chr11 34392962 34393137 -116390416 - L2 LINE L2 -108 3164 3007 21 57 0 0 chr11 34393161 34393196 -116390357 + AT_rich Low_complexity Low_complexity 1 35 0 338 247 13 13 chr11 34393300 34393377 -116390176 + L2 LINE L2 3222 3298 -15 812 294 92 46 chr11 34393386 34393777 -116389776 + L2 LINE L2 2905 3313 0 218 329 0 0 chr11 34394159 34394241 -116389312 + CT-rich Low_complexity Low_complexity 1 82 0 183 80 0 0 chr11 34394932 34394957 -116388596 + (TA)n Simple_repeat Simple_repeat 2 26 0 594 103 0 0 chr11 34395069 34395156 -116388397 + (TA)n Simple_repeat Simple_repeat 1 87 0 2227 113 3 22 chr11 34395219 34395537 -116388016 - AluSx SINE Alu 0 312 1 26 64 0 0 chr11 34395792 34395839 -116387714 + AT_rich Low_complexity Low_complexity 1 47 0 779 199 21 7 chr11 34396268 34396409 -116387144 + MER5A DNA MER1_type 2 144 -45 2086 105 46 0 chr11 34396662 34396947 -116386606 + AluSq SINE Alu 1 298 -15 725 300 113 51 chr11 34397469 34398002 -116385551 - MLT1K LTR MaLR -22 566 1 1998 149 0 0 chr11 34398124 34398412 -116385141 + AluSx SINE Alu 1 288 -24 30 27 0 0 chr11 34398412 34398449 -116385104 + AT_rich Low_complexity Low_complexity 1 37 0 496 266 83 41 chr11 34398516 34398806 -116384747 + L1ME LINE L1 5513 5814 -307 854 231 91 12 chr11 34398808 34399050 -116384503 - MIR SINE MIR 0 262 2 1376 174 0 5 chr11 34399053 34399277 -116384276 + AluJb SINE Alu 70 292 -20 4889 254 114 50 chr11 34399359 34399971 -116383582 + HAL1 LINE L1 3 575 -1932 3620 114 6 21 chr11 34399971 34400506 -116383047 + MER1A DNA MER1_type 1 527 0 4889 254 114 50 chr11 34400506 34401567 -116381986 + HAL1 LINE L1 575 1567 -940 1846 114 81 92 chr11 34401567 34401936 -116381617 - MLT1A1 LTR MaLR 0 365 1 4889 254 114 50 chr11 34401936 34402180 -116381373 + HAL1 LINE L1 1567 1794 -713 2218 97 7 3 chr11 34402180 34402478 -116381075 + AluSp SINE Alu 1 299 -14 4889 254 114 50 chr11 34402478 34402830 -116380723 + HAL1 LINE L1 1794 2418 -89 2134 104 31 0 chr11 34403024 34403313 -116380240 + AluSq SINE Alu 1 298 -15 324 211 0 101 chr11 34403367 34403476 -116380077 - MER112 DNA MER1_type -151 109 12 1975 147 6 13 chr11 34403522 34403835 -116379718 - AluJb SINE Alu 0 312 2 377 216 180 36 chr11 34403946 34404085 -116379468 + MIR SINE MIR 49 207 -55 237 120 84 0 chr11 34404485 34404627 -116378926 + (TA)n Simple_repeat Simple_repeat 1 154 0 35 24 0 0 chr11 34404636 34404678 -116378875 + AT_rich Low_complexity Low_complexity 1 42 0 2015 128 31 0 chr11 34406609 34406898 -116376655 - AluJo SINE Alu -14 298 1 518 379 70 28 chr11 34407542 34407621 -116375932 - L2 LINE L2 0 3272 3198 1856 162 0 7 chr11 34407621 34407918 -116375635 + AluJo SINE Alu 1 295 -17 518 379 70 28 chr11 34407918 34408268 -116375285 - L2 LINE L2 -74 3198 2825 26 30 0 0 chr11 34408818 34408851 -116374702 + AT_rich Low_complexity Low_complexity 1 33 0 290 227 250 8 chr11 34409505 34409637 -116373916 - MER103 DNA DNA -1 165 2 1654 157 3 43 chr11 34409803 34410108 -116373445 + AluJb SINE Alu 1 293 -19 375 23 0 0 chr11 34410109 34410153 -116373400 + (CA)n Simple_repeat Simple_repeat 1 44 0 442 263 0 66 chr11 34410335 34410487 -116373066 - MER112 DNA MER1_type -17 243 102 300 179 12 95 chr11 34410540 34410624 -116372929 + MER103 DNA DNA 11 87 -79 384 262 99 81 chr11 34410875 34411109 -116372444 + MIR SINE MIR 25 262 0 207 0 0 0 chr11 34411736 34411759 -116371794 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2342 57 4 0 chr11 34411762 34412042 -116371511 - AluSx SINE Alu -31 281 1 1031 62 0 0 chr11 34412994 34413124 -116370429 - AluY SINE Alu -9 302 173 339 209 187 33 chr11 34413126 34413308 -116370245 + L1MC4a LINE L1 5961 6170 -1638 1871 147 7 7 chr11 34413323 34413622 -116369931 + AluJb SINE Alu 5 303 -9 2495 70 0 0 chr11 34413823 34414122 -116369431 - AluSq SINE Alu -14 299 1 587 269 186 25 chr11 34414181 34414456 -116369097 + L2 LINE L2 2995 3313 0 515 240 103 14 chr11 34414506 34414652 -116368901 - MIR SINE MIR 0 262 104 597 186 86 14 chr11 34414714 34414854 -116368699 + MLT1A1 LTR MaLR 1 150 -215 2081 130 7 7 chr11 34414860 34415167 -116368386 + AluSx SINE Alu 1 307 -5 1123 150 0 0 chr11 34415297 34415457 -116368096 + FRAM SINE Alu 1 159 -17 572 233 20 33 chr11 34415843 34415993 -116367560 + MIR SINE MIR 7 154 -108 1805 158 60 0 chr11 34415998 34416334 -116367219 + MER46B DNA MER2_type 6 236 0 234 297 99 20 chr11 34416334 34416435 -116367118 + MIR SINE MIR 153 261 -1 1601 144 14 51 chr11 34416442 34416734 -116366819 - AluJb SINE Alu -27 285 5 182 105 26 0 chr11 34417009 34417047 -116366506 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1330 153 5 31 chr11 34417059 34417210 -116366343 - AluJb SINE Alu -28 284 139 2391 112 0 6 chr11 34417210 34417524 -116366029 - AluSx SINE Alu 0 312 1 1330 153 5 31 chr11 34417524 34417594 -116365959 - AluJb SINE Alu -173 139 69 349 280 108 0 chr11 34418056 34418149 -116365404 + L2 LINE L2 3170 3272 0 203 0 0 36 chr11 34418404 34418432 -116365121 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 458 194 0 0 chr11 34418483 34418555 -116364998 + FRAM SINE Alu 74 145 -31 294 355 18 35 chr11 34418687 34418856 -116364697 + L2 LINE L2 2333 2498 -816 201 382 0 10 chr11 34418873 34418975 -116364578 - L2 LINE L2 -818 2496 2396 969 253 128 52 chr11 34419011 34419493 -116364060 - MLT1L LTR MaLR -10 605 73 2333 94 0 0 chr11 34419493 34419790 -116363763 + AluSg SINE Alu 1 297 -13 969 253 128 52 chr11 34419790 34419869 -116363684 - MLT1L LTR MaLR -542 73 1 696 254 53 14 chr11 34419869 34420078 -116363475 - L2 LINE L2 -946 2368 2152 284 328 102 0 chr11 34420078 34420206 -116363347 + MIR SINE MIR 118 258 -4 212 192 77 19 chr11 34420754 34420806 -116362747 + MER5A DNA MER1_type 134 188 -1 1873 126 0 73 chr11 34420896 34421198 -116362355 - AluSx SINE Alu -23 289 10 2167 124 10 0 chr11 34421216 34421523 -116362030 - AluSx SINE Alu -2 310 1 1962 140 3 11 chr11 34421933 34422242 -116361311 - AluSx SINE Alu 0 307 1 1762 154 29 0 chr11 34422281 34422554 -116360999 - AluSx SINE Alu -22 290 10 2011 122 6 38 chr11 34424473 34424793 -116358760 + AluJb SINE Alu 3 312 0 193 278 0 19 chr11 34424934 34424988 -116358565 - MER5B DNA MER1_type -82 96 44 3283 80 2 0 chr11 34425022 34425458 -116358095 - LTR3b LTR ERVK 0 437 1 559 164 14 164 chr11 34425550 34425616 -116357937 - MER58A DNA MER1_type -2198 222 148 1573 110 18 13 chr11 34425616 34425844 -116357709 - MER30 DNA MER1_type -1 229 1 559 164 14 164 chr11 34425844 34425990 -116357563 - MER58A DNA MER1_type -2272 148 42 378 266 80 83 chr11 34426053 34426414 -116357139 + HAL1 LINE L1 930 1289 -1218 2340 101 0 0 chr11 34426489 34426786 -116356767 + AluSx SINE Alu 1 297 -15 261 152 215 38 chr11 34426786 34426865 -116356688 + L1MC5 LINE L1 7823 7915 -46 419 240 220 30 chr11 34426909 34427109 -116356444 - L1ME4a LINE L1 -4 6117 5880 401 151 23 12 chr11 34427352 34427438 -116356115 - LTR67 LTR ERVL -13 544 458 208 304 96 35 chr11 34427876 34427991 -116355562 + MIR SINE MIR 81 202 -60 418 282 153 31 chr11 34428505 34428668 -116354885 - MIR3 SINE MIR -14 194 12 1287 112 0 43 chr11 34428981 34429168 -116354385 + AluSx SINE Alu 1 179 -133 323 241 27 89 chr11 34429518 34429616 -116353937 - L1ME4a LINE L1 -289 5881 5778 2238 156 46 10 chr11 34429616 34430027 -116353526 - MSTB LTR MaLR 0 426 1 323 241 27 89 chr11 34430027 34430152 -116353401 - L1ME4a LINE L1 -392 5778 5672 334 359 19 6 chr11 34430170 34430329 -116353224 - L1ME4a LINE L1 -533 5631 5471 23 0 0 0 chr11 34430346 34430369 -116353184 + AT_rich Low_complexity Low_complexity 1 23 0 1779 139 29 45 chr11 34430378 34430516 -116353037 + AluJb SINE Alu 1 140 -172 2430 82 0 10 chr11 34430516 34430821 -116352732 + AluSp SINE Alu 1 302 -11 1779 139 29 45 chr11 34430821 34430991 -116352562 + AluJb SINE Alu 140 304 -8 478 153 71 0 chr11 34430992 34431090 -116352463 + Charlie4 DNA MER1_type 85 189 -1772 295 218 223 6 chr11 34431112 34431447 -116352106 - L1ME4a LINE L1 -748 5398 5012 1326 182 5 9 chr11 34431464 34431684 -116351869 - AluJo SINE Alu -87 225 7 692 252 115 46 chr11 34431697 34432264 -116351289 - L1ME4a LINE L1 -1137 5009 4404 3555 167 17 16 chr11 34432624 34433332 -116350221 + L1MB7 LINE L1 5456 6164 -20 1050 183 0 6 chr11 34433464 34433639 -116349914 - FRAM SINE Alu -9 167 1 215 324 14 0 chr11 34433977 34434051 -116349502 + L2 LINE L2 2897 2971 -301 * 909 305 78 22 chr11 34434037 34434437 -116349116 - L2 LINE L2 -718 2596 2175 2375 109 0 3 chr11 34434904 34435217 -116348336 - AluSq SINE Alu -1 312 1 537 295 65 5 chr11 34435377 34435577 -116347976 - L1ME LINE L1 -406 5715 5504 559 280 59 0 chr11 34435984 34436170 -116347383 - MER117 DNA MER1_type 0 197 1 936 256 26 0 chr11 34436393 34436627 -116346926 + MIR SINE MIR 13 252 -10 3238 137 12 30 chr11 34436632 34437237 -116346316 + L1MB7 LINE L1 5587 6180 -4 2011 142 7 0 chr11 34437600 34437882 -116345671 - AluJb SINE Alu -17 295 12 21 36 0 0 chr11 34438136 34438164 -116345389 + AT_rich Low_complexity Low_complexity 1 28 0 1790 141 14 24 chr11 34438294 34438584 -116344969 - AluJo SINE Alu -21 291 5 350 258 141 39 chr11 34438795 34438904 -116344649 - L1ME LINE L1 -545 5576 5480 189 0 0 0 chr11 34438904 34438925 -116344628 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 350 258 141 39 chr11 34438925 34439372 -116344181 - L1ME LINE L1 -641 5480 4966 367 171 0 24 chr11 34440718 34440800 -116342753 + MER116 DNA Mariner 1 80 0 883 182 0 0 chr11 34441118 34441261 -116342292 + FLAM_C SINE Alu 1 143 0 2319 102 0 16 chr11 34441324 34441660 -116341893 + AluSx SINE Alu 1 312 0 753 164 0 0 chr11 34441881 34441997 -116341556 - FRAM SINE Alu -21 155 40 2098 139 0 0 chr11 34442007 34442327 -116341226 - AluSx SINE Alu 0 320 1 21 36 0 0 chr11 34442473 34442501 -116341052 + AT_rich Low_complexity Low_complexity 1 28 0 446 319 35 0 chr11 34442555 34442696 -116340857 - MIR3 SINE MIR -13 195 50 1992 144 0 3 chr11 34442934 34443240 -116340313 + AluJb SINE Alu 1 305 -7 2302 96 3 0 chr11 34443428 34443720 -116339833 - AluSp SINE Alu -6 307 15 192 40 0 0 chr11 34444779 34444804 -116338749 + (A)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chr11 34444979 34445009 -116338544 + AT_rich Low_complexity Low_complexity 1 30 0 2173 84 7 14 chr11 34445009 34445296 -116338257 - AluSq SINE Alu -28 285 1 2313 103 0 3 chr11 34446359 34446661 -116336892 + AluSx SINE Alu 1 301 -11 562 221 29 0 chr11 34446829 34446969 -116336584 - Charlie1 DNA MER1_type 0 2761 2618 * 1261 231 20 101 chr11 34446937 34447125 -116336428 - Charlie1 DNA MER1_type -2264 497 296 637 157 74 8 chr11 34447125 34447246 -116336307 + FLAM_A SINE Alu 1 129 -4 1261 231 20 101 chr11 34447246 34447593 -116335960 - Charlie1 DNA MER1_type -2465 296 5 23 0 0 0 chr11 34448606 34448629 -116334924 + AT_rich Low_complexity Low_complexity 1 23 0 316 231 175 42 chr11 34449106 34449249 -116334304 + MIR3 SINE MIR 22 183 -25 1872 91 113 7 chr11 34449876 34450151 -116333402 + AluSg1 SINE Alu 6 309 0 364 320 40 27 chr11 34450280 34450430 -116333123 - L2 LINE L2 0 3272 3121 2367 78 3 10 chr11 34450609 34450915 -116332638 - AluSx SINE Alu -8 304 1 1176 253 162 18 chr11 34451848 34452458 -116331095 - L2 LINE L2 -1 3312 2584 1359 148 15 50 chr11 34452688 34452941 -116330612 - MER33 DNA MER1_type -2277 308 67 1919 148 27 0 chr11 34452941 34453238 -116330315 - AluJb SINE Alu -7 305 1 1359 148 15 50 chr11 34453238 34453315 -116330238 - MER33 DNA MER1_type -2518 67 1 2068 131 0 0 chr11 34453954 34454264 -116329289 + AluSg SINE Alu 1 310 0 363 356 55 14 chr11 34454264 34454410 -116329143 - MIR3 SINE MIR -27 181 30 21 57 0 0 chr11 34454524 34454559 -116328994 + AT_rich Low_complexity Low_complexity 1 35 0 281 259 0 0 chr11 34455400 34455458 -116328095 - L2 LINE L2 -14 3258 3201 306 0 0 0 chr11 34455640 34455674 -116327879 + (ATG)n Simple_repeat Simple_repeat 1 34 0 369 0 0 0 chr11 34455674 34455715 -116327838 + (TTA)n Simple_repeat Simple_repeat 3 43 0 1844 114 40 4 chr11 34455718 34455990 -116327563 - AluSx SINE Alu -30 282 1 1946 142 10 0 chr11 34456311 34456600 -116326953 + AluJb SINE Alu 5 296 -16 51 31 0 0 chr11 34457715 34457780 -116325773 + AT_rich Low_complexity Low_complexity 1 65 0 208 133 26 108 chr11 34457780 34457975 -116325578 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 213 174 14 43 chr11 34457978 34458047 -116325506 + (TAAA)n Simple_repeat Simple_repeat 1 67 0 1398 178 21 4 chr11 34458458 34458739 -116324814 - L1MD3 LINE L1 0 7995 7710 600 196 39 98 chr11 34459476 34459650 -116323903 + L1MC4 LINE L1 7530 7686 -356 1531 171 0 40 chr11 34459650 34459925 -116323628 + AluJb SINE Alu 2 265 -47 600 196 39 98 chr11 34459925 34460005 -116323548 + L1MC4 LINE L1 7686 7769 -273 326 314 58 58 chr11 34460301 34460473 -116323080 + MIR3 SINE MIR 6 177 -31 2227 98 3 0 chr11 34460571 34460857 -116322696 + AluSp SINE Alu 1 287 -26 22 0 0 0 chr11 34460947 34460969 -116322584 + AT_rich Low_complexity Low_complexity 1 22 0 2031 119 32 0 chr11 34460998 34461275 -116322278 - AluSx SINE Alu -26 286 1 314 270 44 13 chr11 34461407 34461566 -116321987 - L1ME4a LINE L1 -4 6117 5954 455 60 134 0 chr11 34461572 34461639 -116321914 - MADE1 DNA Mariner -4 76 1 1260 174 17 49 chr11 34461755 34462043 -116321510 - L1MB2 LINE L1 -12 6159 5881 647 245 0 13 chr11 34462240 34462391 -116321162 + MIR SINE MIR 5 153 -109 250 282 70 14 chr11 34462402 34462473 -116321080 + MER91C DNA MER1_type 33 107 -33 343 287 0 43 chr11 34462484 34462599 -116320954 + MIR SINE MIR 145 254 -8 2262 99 0 0 chr11 34462600 34462933 -116320620 - AluSx SINE Alu 0 333 1 207 0 0 0 chr11 34463230 34463253 -116320300 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 2302 64 20 24 chr11 34463476 34463773 -116319780 + AluY SINE Alu 1 296 -15 1693 166 7 14 chr11 34464007 34464322 -116319231 + AluJb SINE Alu 1 313 0 773 158 0 0 chr11 34464322 34464442 -116319111 - AluJo/FLAM SINE Alu -192 120 1 336 342 0 0 chr11 34464612 34464691 -116318862 - L2 LINE L2 -45 3227 3149 2387 90 0 0 chr11 34464850 34465151 -116318402 + AluSc SINE Alu 1 301 -8 476 62 0 0 chr11 34465268 34465333 -116318220 - AluSp/q SINE Alu -9 304 240 3809 151 60 88 chr11 34465404 34465556 -116317997 + L1MB4 LINE L1 5290 5445 -735 260 200 0 0 chr11 34465556 34465596 -116317957 + AluYb8 SINE Alu 135 174 -134 3809 151 60 88 chr11 34465596 34466137 -116317416 + L1MB4 LINE L1 5445 5995 -185 1523 182 12 102 chr11 34466137 34466538 -116317015 - MLT1A1 LTR MaLR 0 365 1 3809 151 60 88 chr11 34466538 34466707 -116316846 + L1MB4 LINE L1 5995 6167 -13 259 130 37 0 chr11 34466715 34466769 -116316784 + (TA)n Simple_repeat Simple_repeat 1 56 0 2220 120 0 0 chr11 34466822 34467121 -116316432 + AluSx SINE Alu 1 299 -13 1739 187 10 0 chr11 34467213 34467512 -116316041 + AluJb SINE Alu 1 302 -10 2458 78 0 3 chr11 34467515 34467823 -116315730 + AluSg SINE Alu 1 307 -3 2111 118 0 10 chr11 34468920 34469229 -116314324 + AluSq SINE Alu 1 306 0 21 36 0 0 chr11 34469445 34469473 -116314080 + AT_rich Low_complexity Low_complexity 1 28 0 488 224 8 15 chr11 34469899 34470033 -116313520 - L1MA4 LINE L1 0 6300 6168 435 242 104 74 chr11 34470727 34470899 -116312654 - MIR SINE MIR -18 244 62 2327 68 3 53 chr11 34470899 34471220 -116312333 - AluY SINE Alu -6 305 1 435 242 104 74 chr11 34471220 34471278 -116312275 - MIR SINE MIR -200 62 7 2028 111 76 0 chr11 34471702 34472066 -116311487 + AluSg SINE Alu 1 386 0 2301 95 3 10 chr11 34472406 34472711 -116310842 + AluSx SINE Alu 1 303 -9 282 257 19 9 chr11 34474183 34474288 -116309265 + (TA)n Simple_repeat Simple_repeat 2 107 0 2003 139 3 7 chr11 34474964 34475258 -116308295 - AluJb SINE Alu -13 299 7 2180 111 3 0 chr11 34475285 34475583 -116307970 - AluSx SINE Alu -13 299 1 21 57 0 0 chr11 34476299 34476334 -116307219 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr11 34476462 34476483 -116307070 + AT_rich Low_complexity Low_complexity 1 21 0 3508 135 15 13 chr11 34476735 34477376 -116306177 + L1MC/D LINE L1 5159 5800 -533 752 163 0 68 chr11 34477392 34477539 -116306014 - FRAM SINE Alu -20 156 20 382 167 0 0 chr11 34477539 34477605 -116305948 - L1MA7 LINE L1 -336 5955 5890 1491 247 77 68 chr11 34477631 34478217 -116305336 - MLT1E LTR MaLR 0 593 3 2224 131 0 0 chr11 34478305 34478611 -116304942 + AluSx SINE Alu 1 306 -6 1028 264 60 46 chr11 34478882 34479133 -116304420 - HAL1 LINE L1 -851 1656 1410 1362 191 103 15 chr11 34479133 34479405 -116304148 + AluJb SINE Alu 3 298 -14 1762 149 3 63 chr11 34479406 34479722 -116303831 + AluJb SINE Alu 1 297 -15 1028 264 60 46 chr11 34479722 34479949 -116303604 - HAL1 LINE L1 -1096 1411 1169 1178 210 52 38 chr11 34479957 34480300 -116303253 - MER87 LTR ERV1 0 541 194 378 224 48 54 chr11 34480573 34480720 -116302833 - MER87-int LTR ERV1 -617 7503 7358 1012 130 0 0 chr11 34480998 34481136 -116302417 - MER49 LTR ERV1 -171 752 615 * 1420 141 83 40 chr11 34481120 34481396 -116302157 - MER49 LTR ERV1 -633 290 3 1788 147 14 5 chr11 34481406 34481703 -116301850 - MER49-int LTR ERV1 -9 7093 6447 1133 185 11 63 chr11 34481783 34481866 -116301687 - MER87-int LTR ERV1 -2237 4026 3940 1855 156 7 16 chr11 34481866 34482173 -116301380 - AluJb SINE Alu -8 304 1 1133 185 11 63 chr11 34482173 34482240 -116301313 - MER87-int LTR ERV1 -2323 3940 3871 2185 120 20 0 chr11 34482240 34482541 -116301012 - AluSx SINE Alu -5 307 1 1133 185 11 63 chr11 34482541 34482730 -116300823 - MER87-int LTR ERV1 -2392 3871 2469 1855 186 66 73 chr11 34482768 34483111 -116300442 - MER87-int LTR ERV1 -2862 3736 3392 2398 87 0 3 chr11 34483111 34483410 -116300143 + AluSq SINE Alu 1 298 -15 1855 186 66 73 chr11 34483410 34483725 -116299828 - MER87-int LTR ERV1 -3206 3392 3081 1755 60 0 5 chr11 34483725 34483941 -116299612 - AluY SINE Alu -17 294 80 2161 113 0 7 chr11 34483960 34484251 -116299302 + AluSx SINE Alu 11 299 -13 11506 169 21 23 chr11 34484251 34486268 -116297285 + L1PA14 LINE L1 3294 5303 -858 2426 101 0 0 chr11 34486268 34486574 -116296979 + AluSg SINE Alu 1 306 -4 11506 169 21 23 chr11 34486574 34487420 -116296133 + L1PA14 LINE L1 5303 6149 -12 227 30 0 30 chr11 34487431 34487464 -116296089 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 2345 97 0 0 chr11 34487587 34487887 -116295666 - AluSq SINE Alu -13 300 1 27 0 0 26 chr11 34487895 34487915 -116295638 + AT_rich Low_complexity Low_complexity 1 21 -16 2365 103 0 0 chr11 34487915 34488217 -116295336 + AluSg SINE Alu 1 302 -8 27 0 0 26 chr11 34488217 34488234 -116295319 + AT_rich Low_complexity Low_complexity 21 37 0 2422 84 0 0 chr11 34488234 34488551 -116295002 + AluSx SINE Alu 1 317 0 1679 248 34 19 chr11 34488648 34489064 -116294489 - MER87-int LTR ERV1 -1364 422 1 371 263 51 29 chr11 34489065 34489202 -116294351 - MER87 LTR ERV1 0 541 402 2045 109 3 33 chr11 34489224 34489526 -116294027 - AluSx SINE Alu -19 293 1 1832 243 100 53 chr11 34489527 34490001 -116293552 - L1M4 LINE L1 -1081 5065 4615 2097 132 0 0 chr11 34490001 34490310 -116293243 - AluSx SINE Alu 0 309 1 1832 243 100 53 chr11 34490310 34490487 -116293066 - L1M4 LINE L1 -1531 4615 4448 2538 183 34 28 chr11 34490487 34490956 -116292597 + L1MB7 LINE L1 5628 6102 -82 2174 109 0 7 chr11 34490956 34491249 -116292304 + AluSg SINE Alu 1 291 -19 2538 183 34 28 chr11 34491249 34491314 -116292239 + L1MB7 LINE L1 6102 6165 -19 1832 243 100 53 chr11 34491314 34491420 -116292133 - L1M4 LINE L1 -1698 4448 4270 1545 213 167 0 chr11 34491420 34491749 -116291804 + MSTD LTR MaLR 1 384 -12 3759 223 88 47 chr11 34491762 34492860 -116290693 + MSTD-int LTR MaLR 2 1144 -591 990 167 63 45 chr11 34492857 34493002 -116290551 + MSTD-int LTR MaLR 1510 1662 -73 * 2634 50 0 3 chr11 34493002 34493305 -116290248 + AluY SINE Alu 1 302 -9 990 167 63 45 chr11 34493305 34493381 -116290172 + MSTD-int LTR MaLR 1662 1735 0 2051 188 10 42 chr11 34493381 34493790 -116289763 + MSTD LTR MaLR 1 396 0 530 226 16 0 chr11 34493828 34493952 -116289601 - L1M4 LINE L1 -1924 4222 4097 346 189 162 18 chr11 34493949 34494060 -116289493 + L1MC4 LINE L1 7914 8040 -2 * 984 211 54 5 chr11 34494085 34494308 -116289245 - MIR SINE MIR -28 234 1 1695 168 3 44 chr11 34494695 34495016 -116288537 - AluJb SINE Alu 0 309 1 2448 89 3 0 chr11 34495082 34495385 -116288168 - AluSg SINE Alu -6 304 1 553 251 80 84 chr11 34495453 34495556 -116287997 + L1ME LINE L1 5513 5615 -506 624 197 8 0 chr11 34495556 34495678 -116287875 + FLAM_C SINE Alu 3 125 -8 553 251 80 84 chr11 34495678 34495861 -116287692 + L1ME LINE L1 5615 5798 -323 1475 83 0 0 chr11 34495968 34496148 -116287405 - AluSp SINE Alu 0 313 134 2009 73 94 14 chr11 34496148 34496423 -116287130 - AluSx SINE Alu -15 297 1 1950 157 3 0 chr11 34496668 34496968 -116286585 + AluJo SINE Alu 3 303 -9 496 299 83 69 chr11 34497226 34497514 -116286039 - LTR16C LTR ERVL -13 478 187 932 219 136 12 chr11 34497591 34497842 -116285711 + AluJo SINE Alu 1 282 -30 195 129 0 0 chr11 34497843 34497874 -116285679 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2224 114 10 3 chr11 34497876 34498182 -116285371 - AluSx SINE Alu 0 312 5 2247 120 0 7 chr11 34498196 34498505 -116285048 - AluSx SINE Alu -3 309 3 2277 96 3 3 chr11 34498535 34498827 -116284726 + AluSc SINE Alu 1 292 -17 207 0 0 0 chr11 34498837 34498860 -116284693 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1586 155 64 34 chr11 34498860 34499156 -116284397 + AluJo SINE Alu 1 305 -7 1730 168 3 22 chr11 34499156 34499472 -116284081 + AluJo SINE Alu 1 310 -2 1877 112 176 32 chr11 34500060 34500129 -116283424 - MSTA LTR MaLR 0 428 370 2390 92 0 0 chr11 34500129 34500421 -116283132 + AluSg SINE Alu 1 292 -18 1877 112 176 32 chr11 34500421 34500725 -116282828 - MSTA LTR MaLR -58 370 1 1597 109 9 0 chr11 34500754 34500965 -116282588 + AluSg/x SINE Alu 84 296 -14 278 49 0 24 chr11 34501318 34501359 -116282194 + (TG)n Simple_repeat Simple_repeat 2 41 0 364 138 0 0 chr11 34501549 34501607 -116281946 + L1MC4 LINE L1 6974 7031 -1011 2744 209 97 4 chr11 34501611 34502156 -116281397 - MER77 LTR ERV1 -3 602 7 264 170 0 0 chr11 34502157 34502210 -116281343 + L1MC4 LINE L1 7027 7079 -963 2627 129 12 15 chr11 34502214 34502436 -116281117 + MER57A LTR ERV1 1 223 -180 2083 142 134 8 chr11 34502436 34502816 -116280737 - MSTA LTR MaLR 0 428 1 2627 129 12 15 chr11 34502816 34502997 -116280556 + MER57A LTR ERV1 223 403 0 303 195 61 24 chr11 34502997 34503079 -116280474 + L1MC4 LINE L1 7092 7176 -866 730 188 45 8 chr11 34503097 34503230 -116280323 + MLT1C LTR MaLR 327 464 -3 * 3967 145 33 34 chr11 34503229 34503980 -116279573 + LTR1B LTR ERV1 1 772 -13 474 206 41 41 chr11 34504001 34504039 -116279514 + L1MC4a LINE L1 7141 7178 -630 2331 92 3 0 chr11 34504039 34504334 -116279219 - AluSq SINE Alu -17 296 1 474 206 41 41 chr11 34504334 34504441 -116279112 + L1MC4a LINE L1 7177 7286 -522 1715 164 20 0 chr11 34504496 34504795 -116278758 - AluJb SINE Alu -7 305 1 392 280 63 26 chr11 34504802 34504991 -116278562 + MIR SINE MIR 67 262 0 768 200 0 14 chr11 34505467 34505612 -116277941 - FRAM SINE Alu -8 168 26 3080 130 148 96 chr11 34505612 34506857 -116276696 - pTR5 LTR ERV1 -1 1522 6 258 139 51 0 chr11 34506857 34506902 -116276651 - AluSc SINE Alu -135 164 125 184 303 121 10 chr11 34507240 34507339 -116276214 + MIR3 SINE MIR 48 157 -51 353 401 32 6 chr11 34507485 34507642 -116275911 + L2 LINE L2 3112 3272 0 2370 82 0 3 chr11 34507671 34507964 -116275589 + AluY SINE Alu 1 292 -19 671 132 0 9 chr11 34508143 34508249 -116275304 + FLAM_C SINE Alu 29 133 -10 2254 77 10 7 chr11 34508397 34508694 -116274859 + AluSx SINE Alu 5 302 -10 497 60 0 0 chr11 34508876 34508943 -116274610 + L1MA7 LINE L1 6222 6288 -3 213 39 0 0 chr11 34510976 34511002 -116272551 + (CCG)n Simple_repeat Simple_repeat 3 28 0 21 0 0 0 chr11 34511051 34511072 -116272481 + GC_rich Low_complexity Low_complexity 1 21 0 189 180 0 0 chr11 34511142 34511192 -116272361 + C-rich Low_complexity Low_complexity 3 52 0 232 133 33 0 chr11 34511293 34511353 -116272200 + (CCG)n Simple_repeat Simple_repeat 3 64 0 237 139 0 0 chr11 34511407 34511450 -116272103 + (CAG)n Simple_repeat Simple_repeat 1 43 0 1641 116 0 107 chr11 34514479 34514821 -116268732 - AluSp SINE Alu 0 308 1 614 311 5 19 chr11 34515262 34515468 -116268085 - MIR SINE MIR -58 204 2 689 316 131 33 chr11 34515574 34516293 -116267260 + L2 LINE L2 1968 2756 -558 1834 144 0 18 chr11 34516331 34516615 -116266938 + AluJb SINE Alu 1 279 -33 432 0 0 0 chr11 34516615 34516663 -116266890 + (CA)n Simple_repeat Simple_repeat 1 48 0 1596 157 104 7 chr11 34516705 34516985 -116266568 - AluJo SINE Alu 0 312 6 185 184 82 20 chr11 34517605 34517654 -116265899 - L2 LINE L2 -1 3271 3220 1602 280 153 48 chr11 34517861 34518412 -116265141 + L2 LINE L2 2092 2584 -729 2127 130 10 0 chr11 34518412 34518704 -116264849 + AluSx SINE Alu 1 295 -17 1602 280 153 48 chr11 34518704 34519204 -116264349 + L2 LINE L2 2584 3277 -36 760 253 129 5 chr11 34519182 34519384 -116264169 + MIR SINE MIR 7 233 -29 * 204 299 75 0 chr11 34519404 34519471 -116264082 + L2 LINE L2 3241 3312 -1 349 219 31 23 chr11 34519652 34519768 -116263785 - MLT1H LTR MaLR -308 241 97 1918 144 7 3 chr11 34519934 34520233 -116263320 + AluJb SINE Alu 1 300 -12 231 229 0 42 chr11 34520235 34520283 -116263270 - L2 LINE L2 -85 3228 3183 259 215 13 63 chr11 34520315 34520394 -116263159 - L2 LINE L2 -335 2978 2904 981 174 6 0 chr11 34520427 34520594 -116262959 - MER5A DNA MER1_type -21 168 1 270 324 144 0 chr11 34520611 34520750 -116262803 + L2 LINE L2 2990 3148 -165 1017 249 21 4 chr11 34520884 34521121 -116262432 - MIR SINE MIR -14 248 8 343 272 134 38 chr11 34521404 34521665 -116261888 - L2 LINE L2 -27 3286 3001 1923 119 11 21 chr11 34521726 34522044 -116261509 - AluSx SINE Alu 0 315 1 2202 113 3 16 chr11 34522312 34522622 -116260931 - AluSg SINE Alu -4 306 1 180 0 0 0 chr11 34522734 34522754 -116260799 + (T)n Simple_repeat Simple_repeat 1 20 0 537 276 235 22 chr11 34522787 34523145 -116260408 + L2 LINE L2 2880 3313 0 1546 138 40 92 chr11 34524237 34524273 -116259280 - AluJo SINE Alu -2 310 274 2161 103 3 3 chr11 34524273 34524555 -116258998 + AluSq SINE Alu 1 282 -31 1546 138 40 92 chr11 34524555 34524845 -116258708 - AluJo SINE Alu -38 274 1 464 228 46 63 chr11 34524864 34525101 -116258452 - L1MC5 LINE L1 -50 7911 7679 1789 151 10 26 chr11 34525948 34526259 -116257294 + AluJo SINE Alu 1 306 -6 1298 160 89 44 chr11 34526742 34527010 -116256543 - L1M4 LINE L1 -370 5814 5526 2071 141 3 0 chr11 34527010 34527307 -116256246 + AluSx SINE Alu 1 298 -14 1298 160 89 44 chr11 34527307 34527376 -116256177 - L1M4 LINE L1 -658 5526 5462 2223 110 0 7 chr11 34527575 34527874 -116255679 - AluSq SINE Alu -16 297 1 436 272 215 38 chr11 34528063 34528582 -116254971 + L2 LINE L2 2702 3313 0 1196 111 0 32 chr11 34529374 34529563 -116253990 + L1PA8A LINE L1 5949 6131 0 1700 161 60 35 chr11 34529621 34529987 -116253566 + THE1C LTR MaLR 1 375 0 349 323 51 28 chr11 34530158 34530375 -116253178 + L2 LINE L2 2136 2357 -957 208 333 34 51 chr11 34530637 34530754 -116252799 + MER5B DNA MER1_type 63 177 -1 1723 181 0 14 chr11 34530759 34531051 -116252502 + AluJo SINE Alu 1 288 -24 197 359 20 56 chr11 34531232 34531312 -116252241 + L2 LINE L2 2927 3008 -264 2514 73 0 10 chr11 34531312 34531625 -116251928 - AluY SINE Alu -1 310 1 197 359 20 56 chr11 34531625 34531739 -116251814 + L2 LINE L2 3008 3114 -158 497 255 39 97 chr11 34531787 34532046 -116251507 - MIR SINE MIR 0 262 19 1697 157 51 3 chr11 34533046 34533340 -116250213 - AluJo SINE Alu -4 308 1 24 0 0 0 chr11 34533357 34533381 -116250172 + AT_rich Low_complexity Low_complexity 1 24 0 2158 78 60 0 chr11 34534049 34534333 -116249220 - AluSp SINE Alu -12 301 1 2561 162 49 38 chr11 34534347 34534585 -116248968 - L1MB7 LINE L1 -16 6168 5934 1786 171 58 0 chr11 34534585 34534912 -116248641 - MER7A DNA MER2_type -1 345 2 2366 73 0 26 chr11 34534915 34535218 -116248335 - AluSx SINE Alu -17 295 1 2561 162 49 38 chr11 34535218 34535549 -116248004 - L1MB7 LINE L1 -251 5933 5589 2309 109 13 0 chr11 34535675 34535978 -116247575 + AluSx SINE Alu 1 307 -5 222 309 0 29 chr11 34536179 34536247 -116247306 + L2 LINE L2 3193 3258 -14 787 265 115 30 chr11 34536306 34536855 -116246698 - L2 LINE L2 -15 3298 2627 944 145 78 0 chr11 34537021 34537200 -116246353 - L1MC2 LINE L1 -15 6329 6137 745 179 174 30 chr11 34537293 34537494 -116246059 - AluJo SINE Alu -18 294 65 3943 151 49 36 chr11 34537504 34538326 -116245227 - L1MC3 LINE L1 -317 7468 6637 4221 174 45 13 chr11 34538457 34539664 -116243889 + L1MB7 LINE L1 4940 6184 0 2547 204 113 22 chr11 34539659 34540560 -116242993 + L1ME1 LINE L1 4375 5357 -789 * 2023 198 105 54 chr11 34540577 34540613 -116242940 + L1ME1 LINE L1 5434 5467 -699 2316 116 0 0 chr11 34540613 34540916 -116242637 - AluSx SINE Alu -9 303 1 2023 198 105 54 chr11 34540916 34541523 -116242030 + L1ME1 LINE L1 5467 6042 -124 2241 98 0 17 chr11 34541523 34541818 -116241735 + AluSx SINE Alu 1 290 -22 2211 83 3 14 chr11 34541818 34542107 -116241446 + AluSc SINE Alu 1 286 -23 2023 198 105 54 chr11 34542107 34542147 -116241406 + L1ME1 LINE L1 6041 6154 -12 979 216 28 85 chr11 34542165 34542411 -116241142 + L1ME LINE L1 4938 5197 -965 1743 173 26 16 chr11 34542411 34542717 -116240836 + AluJb SINE Alu 1 309 -3 979 216 28 85 chr11 34542717 34542867 -116240686 + L1ME LINE L1 5197 5354 -808 3095 140 36 4 chr11 34542867 34543390 -116240163 - L1PA16 LINE L1 -3 6163 5624 979 216 28 85 chr11 34543390 34543622 -116239931 + L1ME LINE L1 5354 5539 -623 2021 140 0 3 chr11 34543624 34543949 -116239604 - AluSx SINE Alu 0 324 1 368 221 53 21 chr11 34543972 34544067 -116239486 + L1MC4a LINE L1 7270 7367 -441 943 142 28 0 chr11 34544068 34544209 -116239344 + FRAM SINE Alu 1 145 -31 226 250 16 0 chr11 34544214 34544278 -116239275 + L1MC4 LINE L1 7508 7572 -470 430 243 133 39 chr11 34544393 34544702 -116238851 + L1MC4 LINE L1 7705 8042 0 234 418 37 11 chr11 34544834 34545023 -116238530 - MIR3 SINE MIR -12 196 3 2210 104 0 3 chr11 34545529 34545828 -116237725 - AluSg SINE Alu -12 298 1 27 0 0 0 chr11 34545851 34545878 -116237675 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr11 34546018 34546053 -116237500 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr11 34547008 34547029 -116236524 + AT_rich Low_complexity Low_complexity 1 21 0 1972 113 0 8 chr11 34547230 34547496 -116236057 - AluSg SINE Alu -9 301 38 386 281 21 0 chr11 34548354 34548450 -116235103 + MIR3 SINE MIR 87 184 -24 289 297 117 9 chr11 34548776 34548998 -116234555 - L1MC/D LINE L1 -2005 5803 5558 1511 164 124 7 chr11 34549421 34549695 -116233858 + AluJo SINE Alu 3 308 -4 3320 32 17 0 chr11 34554165 34554572 -116228981 - L1PA4 LINE L1 -1 6154 5741 440 297 90 7 chr11 34554703 34554848 -116228705 - MIR SINE MIR -86 176 20 188 347 55 40 chr11 34555311 34555393 -116228160 + L2 LINE L2 2553 2632 -682 1968 161 0 16 chr11 34555393 34555709 -116227844 - AluJo SINE Alu -1 311 1 188 347 55 40 chr11 34555709 34555825 -116227728 + L2 LINE L2 2632 2754 -560 213 240 227 87 chr11 34556209 34556359 -116227194 + MIR SINE MIR 15 185 -77 308 253 22 65 chr11 34557590 34557826 -116225727 - L1ME LINE L1 -5426 657 446 247 265 12 24 chr11 34557943 34558026 -116225527 - L1ME LINE L1 -5669 401 320 198 0 0 0 chr11 34558070 34558092 -116225461 + (T)n Simple_repeat Simple_repeat 1 22 0 324 311 68 26 chr11 34558479 34558669 -116224884 - L1 LINE L1 -2343 3803 3606 290 261 124 40 chr11 34558770 34559294 -116224259 - L1 LINE L1 -2703 3443 2876 233 29 0 29 chr11 34559335 34559370 -116224183 + (TTA)n Simple_repeat Simple_repeat 3 36 0 41212 33 21 0 chr11 34559370 34565376 -116218177 - L1PA3 LINE L1 -18 6137 1 334 247 138 35 chr11 34565610 34565784 -116217769 + L1MC5 LINE L1 7734 7925 -36 371 283 190 12 chr11 34565786 34566044 -116217509 - L1 LINE L1 -3531 2615 2312 270 304 33 22 chr11 34566243 34566424 -116217129 + L1M4 LINE L1 2872 3054 -3092 1086 184 0 23 chr11 34566549 34566767 -116216786 + AluJo SINE Alu 87 299 -13 292 230 65 50 chr11 34566886 34567025 -116216528 - L1MC5 LINE L1 -50 7911 7771 728 235 171 24 chr11 34567376 34567797 -116215756 + Charlie2 DNA MER1_type 1988 2470 -392 2218 114 3 0 chr11 34568215 34568513 -116215040 - AluSx SINE Alu -13 299 1 2442 200 133 3 chr11 34568660 34569301 -116214252 - L1MB8 LINE L1 0 6178 5455 4289 220 121 17 chr11 34569308 34569958 -116213595 - L1MB8 LINE L1 -1247 4899 4318 2342 82 0 10 chr11 34569958 34570261 -116213292 - AluSq SINE Alu -13 300 1 4289 220 121 17 chr11 34570261 34570922 -116212631 - L1MB8 LINE L1 -1828 4318 3422 2236 101 14 0 chr11 34570922 34571219 -116212334 - AluSg SINE Alu -9 301 1 4289 220 121 17 chr11 34571219 34571353 -116212200 - L1MB8 LINE L1 -2724 3422 3303 1036 181 11 5 chr11 34571464 34571652 -116211901 - AluJo SINE Alu -4 308 120 182 222 79 48 chr11 34572051 34572114 -116211439 - L3 LINE CR1 -686 891 827 21 57 0 0 chr11 34572609 34572644 -116210909 + AT_rich Low_complexity Low_complexity 1 35 0 765 134 0 25 chr11 34572802 34572921 -116210632 - AluJo SINE Alu -179 133 18 543 298 10 62 chr11 34573155 34573363 -116210190 + L3 LINE CR1 1375 1571 -6 32 67 0 0 chr11 34574574 34574634 -116208919 + AT_rich Low_complexity Low_complexity 1 60 0 1864 157 39 0 chr11 34574902 34575183 -116208370 - AluJb SINE Alu -20 292 1 2464 78 3 0 chr11 34575248 34575554 -116207999 - AluSx SINE Alu 0 312 6 195 239 45 60 chr11 34576442 34576509 -116207044 + MIR3 SINE MIR 122 187 -21 1845 154 21 0 chr11 34576511 34576796 -116206757 - AluJo SINE Alu -17 295 5 22 35 0 0 chr11 34576869 34576898 -116206655 + AT_rich Low_complexity Low_complexity 1 29 0 638 156 39 0 chr11 34577031 34577159 -116206394 - Charlie1a DNA MER1_type -5 1450 1318 906 215 72 5 chr11 34577236 34577445 -116206108 + MER58A DNA MER1_type 1 223 -1 1978 151 3 16 chr11 34577880 34578185 -116205368 - AluJb SINE Alu -11 301 1 654 221 0 0 chr11 34578217 34578339 -116205214 + FLAM_A SINE Alu 3 124 -9 2265 108 0 10 chr11 34578393 34578698 -116204855 + AluSq SINE Alu 1 302 -11 850 193 171 53 chr11 34579016 34579559 -116203994 - Charlie1a DNA MER1_type -2 1453 778 3967 145 42 61 chr11 34579588 34580764 -116202789 - L1MB4 LINE L1 -8 6172 5015 2087 196 29 22 chr11 34580771 34581261 -116202292 - Charlie1a DNA MER1_type -686 769 277 1209 140 82 14 chr11 34581267 34581474 -116202079 - AluJb SINE Alu -5 307 87 2155 96 14 3 chr11 34581477 34581769 -116201784 - AluSg SINE Alu -15 295 1 1589 199 11 14 chr11 34581798 34582085 -116201468 - AluJo SINE Alu -26 286 1 1582 191 18 18 chr11 34582111 34582393 -116201160 - AluJo SINE Alu -30 282 1 771 200 65 88 chr11 34582396 34582656 -116200897 - Charlie1a DNA MER1_type -1174 281 28 815 168 15 0 chr11 34582702 34582833 -116200720 + FLAM_C SINE Alu 1 133 0 261 0 0 0 chr11 34582837 34582866 -116200687 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 441 81 0 0 chr11 34582865 34582927 -116200626 + (CA)n Simple_repeat Simple_repeat 2 63 0 850 152 16 0 chr11 34583023 34583148 -116200405 - FLAM_A SINE Alu -6 127 1 1720 181 0 13 chr11 34583225 34583535 -116200018 - AluJo SINE Alu -3 309 4 2195 96 21 0 chr11 34583788 34584068 -116199485 + AluSq SINE Alu 1 286 -27 486 0 0 0 chr11 34584068 34584122 -116199431 + (CA)n Simple_repeat Simple_repeat 2 55 0 225 226 30 167 chr11 34584122 34584290 -116199263 - MER5B DNA MER1_type -29 149 5 521 124 1 18 chr11 34585018 34585128 -116198425 - L1PB3 LINE L1 -513 5641 5534 3360 95 65 0 chr11 34585128 34585613 -116197940 + L1PB3 LINE L1 5623 6147 -7 575 186 0 0 chr11 34585643 34585740 -116197813 - MER7A DNA MER2_type -250 96 2 416 268 159 13 chr11 34585771 34585944 -116197609 - MIR3 SINE MIR -59 203 7 299 333 170 20 chr11 34585985 34586132 -116197421 - MIR3 SINE MIR -24 184 16 2272 128 0 0 chr11 34587808 34588120 -116195433 - AluSx SINE Alu 0 312 1 320 118 147 29 chr11 34588138 34588206 -116195347 - LTR49 LTR ERV1 -77 567 459 319 200 15 0 chr11 34588408 34588473 -116195080 + Charlie1 DNA MER1_type 1498 1563 -1198 207 320 0 0 chr11 34588481 34588531 -116195022 - MIR SINE MIR -129 79 30 2008 156 0 3 chr11 34588533 34588841 -116194712 - AluSx SINE Alu -5 307 1 1765 100 141 0 chr11 34589082 34589351 -116194202 - AluSx SINE Alu -5 307 1 2505 54 0 0 chr11 34589923 34590219 -116193334 + AluY SINE Alu 6 301 -10 2057 145 0 0 chr11 34590543 34590868 -116192685 - AluSx SINE Alu 0 325 1 266 262 12 46 chr11 34591222 34591330 -116192223 - MLT1H LTR MaLR -402 147 15 451 140 86 9 chr11 34591975 34592092 -116191461 - L1MA8 LINE L1 -23 6268 6152 234 217 0 0 chr11 34592199 34592245 -116191308 + L1ME LINE L1 5543 5588 -533 1831 155 13 30 chr11 34592271 34592574 -116190979 + AluJo SINE Alu 1 298 -14 493 262 40 16 chr11 34592740 34592866 -116190687 - L2 LINE L2 -1 3312 3184 23 33 0 0 chr11 34593197 34593227 -116190326 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr11 34596608 34596629 -116186924 + AT_rich Low_complexity Low_complexity 1 21 0 1760 116 153 0 chr11 34597011 34597312 -116186241 - MER7A DNA MER2_type 0 346 2 24 0 0 0 chr11 34597478 34597502 -116186051 + AT_rich Low_complexity Low_complexity 1 24 0 2159 109 7 0 chr11 34598695 34598978 -116184575 + AluSc SINE Alu 5 289 -20 1662 145 119 0 chr11 34599533 34599802 -116183751 - AluSx SINE Alu -11 301 1 1785 136 11 0 chr11 34600049 34600322 -116183231 - AluJb SINE Alu -36 276 1 1923 170 0 3 chr11 34601026 34601337 -116182216 - AluJo SINE Alu -2 310 1 390 374 59 20 chr11 34601359 34601562 -116181991 + L2 LINE L2 3061 3271 -1 639 111 130 0 chr11 34601872 34601980 -116181573 + FRAM SINE Alu 36 157 -19 268 277 125 49 chr11 34602102 34602286 -116181267 + MIR3 SINE MIR 5 202 -6 2363 97 0 0 chr11 34602726 34603035 -116180518 - AluSc SINE Alu 0 309 1 1677 158 79 4 chr11 34603626 34603904 -116179649 + AluJo SINE Alu 7 305 -7 1272 180 137 49 chr11 34603957 34604232 -116179321 - MLT1A2 LTR MaLR 0 374 124 1940 144 0 0 chr11 34604232 34604517 -116179036 + AluSx SINE Alu 1 285 -27 264 91 0 0 chr11 34604517 34604561 -116178992 + (CATA)n Simple_repeat Simple_repeat 2 45 0 1272 180 137 49 chr11 34604561 34604628 -116178925 - MLT1A2 LTR MaLR -249 125 1 582 291 116 12 chr11 34604873 34605131 -116178422 + L2 LINE L2 2510 2794 -520 478 227 60 7 chr11 34605132 34605282 -116178271 + L1MEc LINE L1 37 194 -6202 435 165 110 0 chr11 34605271 34605380 -116178173 + L1M LINE L1 5281 5401 -890 * 2026 113 40 0 chr11 34605381 34605655 -116177898 + AluSx SINE Alu 1 285 -27 207 0 0 0 chr11 34605655 34605678 -116177875 + (CA)n Simple_repeat Simple_repeat 2 24 0 2098 142 3 3 chr11 34605688 34605999 -116177554 - AluSq SINE Alu 0 313 3 1801 126 8 129 chr11 34606057 34606438 -116177115 + MER1B DNA MER1_type 3 337 0 1884 182 64 25 chr11 34606533 34606973 -116176580 - LTR2B LTR ERV1 0 490 34 3722 181 26 53 chr11 34606990 34607819 -116175734 + L1MB2 LINE L1 4731 5500 -671 720 157 0 79 chr11 34607819 34607959 -116175594 + FLAM_C SINE Alu 5 133 0 3722 181 26 53 chr11 34607959 34608570 -116174983 + L1MB2 LINE L1 5500 6126 -45 964 184 5 53 chr11 34608574 34608833 -116174720 + AluJo SINE Alu 85 333 0 2273 102 17 0 chr11 34609272 34609567 -116173986 - AluSg SINE Alu -10 300 1 966 220 20 52 chr11 34610118 34610410 -116173143 - L1MDa LINE L1 -3867 2777 2511 1567 190 7 37 chr11 34610410 34610705 -116172848 - AluJo SINE Alu -26 286 1 966 220 20 52 chr11 34610705 34610916 -116172637 - L1MDa LINE L1 -4133 2511 2295 673 212 0 0 chr11 34611022 34611140 -116172413 - FLAM_A SINE Alu -15 127 10 3501 209 55 23 chr11 34611153 34611209 -116172344 - L1MDa LINE L1 -4897 1645 1592 1563 179 80 54 chr11 34611209 34611595 -116171958 - MSTD LTR MaLR 0 396 1 3501 209 55 23 chr11 34611595 34611871 -116171682 - L1MDa LINE L1 -4950 1592 1326 2272 111 7 0 chr11 34611871 34612168 -116171385 - AluSx SINE Alu -13 299 1 3501 209 55 23 chr11 34612168 34612828 -116170725 - L1MDa LINE L1 -5216 1326 620 1560 165 22 11 chr11 34612847 34613137 -116170416 - AluJo SINE Alu 0 304 12 17854 164 63 32 chr11 34613146 34616026 -116167527 - L1PA11 LINE L1 0 7612 4822 2297 80 0 27 chr11 34616026 34616325 -116167228 - AluSc SINE Alu -18 291 1 17854 164 63 32 chr11 34616325 34617347 -116166206 - L1PA11 LINE L1 -2790 4822 3833 1989 70 114 7 chr11 34617347 34617619 -116165934 - AluY SINE Alu -10 301 1 17854 164 63 32 chr11 34617619 34617656 -116165897 - L1PA11 LINE L1 -3779 3833 3799 1063 124 0 0 chr11 34617656 34617801 -116165752 - AluSg/x SINE Alu -34 278 134 17854 164 63 32 chr11 34617801 34620314 -116163239 - L1PA11 LINE L1 -3813 3799 4 499 183 10 29 chr11 34620323 34620427 -116163126 - L1MDa LINE L1 -5944 598 497 945 214 62 5 chr11 34620481 34620705 -116162848 - L1M4 LINE L1 -6290 252 16 234 0 0 0 chr11 34620782 34620808 -116162745 + (CA)n Simple_repeat Simple_repeat 2 27 0 27 0 0 0 chr11 34621139 34621166 -116162387 + AT_rich Low_complexity Low_complexity 1 27 0 2213 118 3 0 chr11 34621385 34621690 -116161863 - AluSc SINE Alu -3 306 1 237 269 32 54 chr11 34621837 34621930 -116161623 - MIR SINE MIR -88 120 30 1130 168 92 65 chr11 34621938 34622230 -116161323 - L1MDa LINE L1 -6224 420 121 229 273 0 18 chr11 34622296 34622372 -116161181 + polypyrimidine Low_complexity Low_complexity 1 74 0 574 156 0 0 chr11 34622378 34622468 -116161085 - HY4 scRNA scRNA -3 90 1 352 157 14 14 chr11 34622472 34622542 -116161011 + MER69 DNA AcHobo 2457 2526 0 236 220 0 0 chr11 34622542 34622592 -116160961 + L2 LINE L2 3264 3313 0 182 304 22 0 chr11 34622946 34622992 -116160561 - MER5B DNA MER1_type 0 178 132 868 254 61 96 chr11 34623904 34624381 -116159172 - L2 LINE L2 -1 3312 2853 1101 190 56 0 chr11 34624433 34624649 -116158904 - AluJb SINE Alu -4 308 81 1647 231 97 28 chr11 34624651 34625115 -116158438 - L2 LINE L2 -600 2714 2219 1250 157 10 0 chr11 34625128 34625326 -116158227 - AluJb SINE Alu -28 284 85 701 196 30 0 chr11 34625328 34625461 -116158092 - AluJb SINE Alu -173 139 3 649 250 114 11 chr11 34625463 34625647 -116157906 - L2 LINE L2 -1100 2214 2012 417 167 11 33 chr11 34625694 34625784 -116157769 - AluJ/FRAM SINE Alu -5 307 220 1720 202 7 0 chr11 34625844 34626151 -116157402 - AluSx SINE Alu -3 309 1 1580 172 20 30 chr11 34626186 34626482 -116157071 + AluJo SINE Alu 1 293 -19 351 293 23 30 chr11 34627229 34627362 -116156191 - L2 LINE L2 0 3313 3182 1960 125 57 0 chr11 34627489 34627768 -116155785 + AluSg SINE Alu 1 295 -15 1533 150 73 42 chr11 34627777 34628064 -116155489 + AluJb SINE Alu 1 296 -16 1538 164 47 47 chr11 34628070 34628369 -116155184 + AluJo SINE Alu 1 299 -13 217 243 57 43 chr11 34628414 34628484 -116155069 + MER5A DNA MER1_type 69 139 -50 1125 170 0 65 chr11 34628774 34629003 -116154550 + AluJb SINE Alu 87 300 -12 2253 115 3 6 chr11 34629329 34629641 -116153912 - AluSx SINE Alu -1 311 1 1962 151 0 10 chr11 34630227 34630532 -116153021 - AluJb SINE Alu -2 310 9 2225 108 3 3 chr11 34630731 34631027 -116152526 - AluSp SINE Alu -16 297 2 5790 40 0 1 chr11 34631068 34631763 -116151790 + L1PA5 LINE L1 5455 6148 -6 2025 113 17 7 chr11 34632352 34632645 -116150908 - AluSg SINE Alu -14 296 1 195 184 0 0 chr11 34633242 34633280 -116150273 + (TTA)n Simple_repeat Simple_repeat 3 40 0 351 253 30 84 chr11 34633289 34633455 -116150098 - MIR SINE MIR -18 244 88 2404 75 3 0 chr11 34633470 34633777 -116149776 - AluSx SINE Alu -4 308 1 202 197 30 30 chr11 34634174 34634240 -116149313 + (CGGGG)n Simple_repeat Simple_repeat 4 69 0 863 116 106 40 chr11 34636813 34637012 -116146541 - L1MC3 LINE L1 -120 7665 7454 285 347 10 30 chr11 34637110 34637226 -116146327 - MIR SINE MIR -92 116 9 925 125 190 0 chr11 34637291 34637475 -116146078 - MER20 DNA MER1_type 0 219 1 2124 147 0 0 chr11 34637510 34637803 -116145750 + AluSx SINE Alu 5 297 -15 814 191 13 13 chr11 34638770 34638922 -116144631 - FRAM SINE Alu -12 154 3 2338 90 3 13 chr11 34639089 34639399 -116144154 + AluSg SINE Alu 1 307 -3 343 269 218 6 chr11 34640536 34640692 -116142861 + MIR SINE MIR 72 260 -2 922 52 0 35 chr11 34641101 34641216 -116142337 + AluY SINE Alu 36 146 -165 * 1357 157 17 8 chr11 34641215 34641451 -116142102 + AluJb SINE Alu 69 306 -6 801 200 0 0 chr11 34641452 34641602 -116141951 - MER6B DNA MER2_type -60 150 1 285 184 146 0 chr11 34642924 34643027 -116140526 - L1MC4 LINE L1 0 8042 7925 1856 137 3 24 chr11 34643795 34644087 -116139466 - AluJb SINE Alu -15 297 12 451 304 39 34 chr11 34644483 34644687 -116138866 - MIR SINE MIR -56 206 2 337 178 41 0 chr11 34645105 34645178 -116138375 + L1MB7 LINE L1 6099 6174 -10 296 279 161 25 chr11 34645398 34645559 -116137994 + L2 LINE L2 2866 3048 -224 955 132 147 57 chr11 34645569 34645793 -116137760 - MER33 DNA MER1_type -2266 319 60 2273 108 0 0 chr11 34645793 34646090 -116137463 - AluSg SINE Alu -13 297 1 955 132 147 57 chr11 34646090 34646166 -116137387 - MER33 DNA MER1_type -2525 60 1 374 278 71 0 chr11 34646261 34646387 -116137166 - MIR SINE MIR -10 252 118 180 111 0 0 chr11 34646551 34646578 -116136975 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 23 78 0 0 chr11 34646637 34646688 -116136865 + AT_rich Low_complexity Low_complexity 1 51 0 2242 93 0 3 chr11 34646951 34647280 -116136273 - AluSq SINE Alu 0 328 1 810 154 119 28 chr11 34647300 34647443 -116136110 - FRAM SINE Alu -23 153 1 192 236 112 56 chr11 34647493 34647582 -116135971 + MIR SINE MIR 169 262 0 2368 25 7 4 chr11 34647620 34647938 -116135615 + AluY SINE Alu 1 319 0 660 110 73 0 chr11 34649231 34649340 -116134213 - L1MB7 LINE L1 -16 6168 6052 2277 90 3 0 chr11 34649457 34649747 -116133806 - AluSg SINE Alu -19 291 1 215 329 86 0 chr11 34649849 34649919 -116133634 + L2 LINE L2 3197 3272 0 292 322 34 34 chr11 34649996 34650114 -116133439 + L2 LINE L2 3151 3268 -4 668 228 37 37 chr11 34650493 34650708 -116132845 + L1ME1 LINE L1 5934 6148 -18 261 263 0 0 chr11 34651339 34651396 -116132157 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 991 166 37 0 chr11 34651981 34652144 -116131409 - AluJb SINE Alu -15 297 129 1290 158 5 0 chr11 34652155 34652357 -116131196 + AluY SINE Alu 1 203 -108 333 55 0 18 chr11 34652457 34652512 -116131041 + Alu SINE Alu 245 298 -2 901 110 0 0 chr11 34652519 34652637 -116130916 - AluJb SINE Alu -194 118 1 445 298 43 120 chr11 34652643 34653042 -116130511 - L2 LINE L2 -16 3256 2889 855 284 62 25 chr11 34653056 34653492 -116130061 + L1ME LINE L1 13 464 -5606 977 243 48 65 chr11 34653734 34654303 -116129250 + L1ME LINE L1 529 1087 -4983 26 107 0 0 chr11 34655329 34655432 -116128121 + AT_rich Low_complexity Low_complexity 1 103 0 2143 105 3 7 chr11 34655637 34655922 -116127631 + AluSx SINE Alu 13 296 -16 1520 184 48 24 chr11 34655972 34656265 -116127288 - AluJo SINE Alu -12 300 1 1205 169 75 24 chr11 34656370 34656625 -116126928 + Charlie1b DNA MER1_type 42 309 -214 1859 166 27 3 chr11 34656628 34656923 -116126630 + AluJb SINE Alu 1 302 -10 883 150 0 0 chr11 34657054 34657187 -116126366 - FLAM_C SINE Alu 0 133 1 278 132 8 0 chr11 34657865 34657924 -116125629 + L1PA8A LINE L1 5600 5660 -474 * 335 40 20 0 chr11 34657917 34657967 -116125586 + L1P5 LINE L1 5556 5606 -550 23 33 0 0 chr11 34658227 34658257 -116125296 + AT_rich Low_complexity Low_complexity 1 30 0 1912 159 0 26 chr11 34658266 34658574 -116124979 + AluJo SINE Alu 1 300 -12 701 204 0 0 chr11 34658590 34658722 -116124831 + FLAM_C SINE Alu 6 137 -6 615 174 0 0 chr11 34659129 34659221 -116124332 + AluJb SINE Alu 3 94 -218 1188 156 0 29 chr11 34659264 34659469 -116124084 + AluJb SINE Alu 96 294 -18 505 306 65 90 chr11 34660990 34661313 -116122240 - L2 LINE L2 -31 3241 2927 555 250 85 30 chr11 34661649 34661849 -116121704 + MIR SINE MIR 52 262 0 687 279 67 44 chr11 34662738 34663090 -116120463 + L1MC4a LINE L1 5298 5667 -2141 2140 104 20 3 chr11 34663090 34663387 -116120166 + AluSg SINE Alu 1 302 -8 687 279 67 44 chr11 34663387 34663554 -116119999 + L1MC4a LINE L1 5667 5829 -1979 30 45 0 0 chr11 34663587 34663631 -116119922 + AT_rich Low_complexity Low_complexity 1 44 0 2263 117 0 0 chr11 34664113 34664411 -116119142 + AluSq SINE Alu 1 298 -15 324 252 109 34 chr11 34664469 34664588 -116118965 + MIR SINE MIR 88 215 -47 1909 133 7 0 chr11 34665078 34665390 -116118163 + AluSx SINE Alu 12 325 0 937 177 0 7 chr11 34665506 34665683 -116117870 + FRAM SINE Alu 1 175 0 23 0 0 0 chr11 34665787 34665810 -116117743 + AT_rich Low_complexity Low_complexity 1 23 0 894 121 0 30 chr11 34665911 34666043 -116117510 + FLAM_C SINE Alu 1 128 -5 2322 89 10 0 chr11 34666707 34666998 -116116555 + AluSq SINE Alu 1 294 -19 397 235 96 17 chr11 34667685 34667800 -116115753 - L2 LINE L2 0 3313 3190 674 184 7 52 chr11 34667922 34668058 -116115495 + AluJb SINE Alu 2 131 -181 676 192 56 18 chr11 34669579 34669779 -116113774 - MIR SINE MIR -2 260 2 345 299 104 26 chr11 34672168 34672399 -116111154 + L1ME4a LINE L1 5615 5863 -258 263 281 16 0 chr11 34672810 34672874 -116110679 + L2 LINE L2 3205 3269 -3 1891 164 3 3 chr11 34674762 34675074 -116108479 + AluJo SINE Alu 1 312 0 1183 221 120 35 chr11 34675316 34675799 -116107754 + L1MC/D LINE L1 5296 5819 -1989 249 196 0 0 chr11 34676015 34676071 -116107482 + (TA)n Simple_repeat Simple_repeat 2 57 0 464 282 110 27 chr11 34676915 34677386 -116106167 - L1MEd LINE L1 -4784 1526 981 337 320 74 29 chr11 34677505 34677680 -116105873 - L1MEd LINE L1 -5448 671 489 351 338 71 71 chr11 34677700 34678138 -116105415 - L1MEd LINE L1 -5666 453 16 1426 173 60 25 chr11 34678307 34678591 -116104962 + AluJo SINE Alu 1 294 -18 822 286 168 28 chr11 34678892 34679280 -116104273 - L2 LINE L2 -5 3308 2867 449 123 0 0 chr11 34679758 34679823 -116103730 - AluS SINE Alu -13 297 233 2004 127 0 0 chr11 34681246 34681521 -116102032 - AluSx SINE Alu -37 275 1 2096 109 11 0 chr11 34682320 34682604 -116100949 + AluSq SINE Alu 1 287 -26 1188 125 0 180 chr11 34682892 34683164 -116100389 + AluJb SINE Alu 65 287 -25 2309 51 14 20 chr11 34683694 34683988 -116099565 + AluY SINE Alu 1 292 -19 686 164 8 16 chr11 34684534 34684656 -116098897 - FLAM_C SINE Alu -12 121 1 26 50 0 0 chr11 34684970 34685010 -116098543 + AT_rich Low_complexity Low_complexity 1 40 0 1294 269 203 4 chr11 34685387 34685710 -116097843 + L1MC4 LINE L1 7191 7448 -594 1330 114 249 0 chr11 34685710 34685947 -116097606 + AluSx SINE Alu 1 296 -6 1294 269 203 4 chr11 34685947 34686332 -116097221 + L1MC4 LINE L1 7448 8040 -2 260 305 47 23 chr11 34687559 34687687 -116095866 - MER5B DNA MER1_type -42 136 6 237 250 162 0 chr11 34687716 34687784 -116095769 + MIR3 SINE MIR 121 199 -9 26 74 0 0 chr11 34688446 34688500 -116095053 + AT_rich Low_complexity Low_complexity 1 54 0 33 25 0 0 chr11 34691793 34691833 -116091720 + AT_rich Low_complexity Low_complexity 1 40 0 185 108 27 0 chr11 34692524 34692561 -116090992 + (CATA)n Simple_repeat Simple_repeat 1 38 0 296 206 0 0 chr11 34693902 34693970 -116089583 - HAL1 LINE L1 -343 2164 2097 1435 184 63 24 chr11 34694275 34694606 -116088947 - MER2 DNA MER2_type 0 344 1 1845 191 137 2 chr11 34694704 34695165 -116088388 - Charlie1b DNA MER1_type 0 523 1 1728 149 8 4 chr11 34695595 34695863 -116087690 + AluSx SINE Alu 1 269 -43 2017 86 16 0 chr11 34695867 34696123 -116087430 + AluY SINE Alu 32 291 -20 307 325 17 8 chr11 34696680 34696800 -116086753 + L1M4 LINE L1 4915 5035 -1111 1335 172 19 15 chr11 34696855 34697117 -116086436 + AluJb SINE Alu 33 295 -17 1528 170 43 18 chr11 34697278 34697560 -116085993 + AluJb SINE Alu 1 289 -23 32 0 0 0 chr11 34697561 34697593 -116085960 + AT_rich Low_complexity Low_complexity 1 32 0 2121 104 0 16 chr11 34697655 34697963 -116085590 + AluY SINE Alu 1 303 -8 2188 110 0 19 chr11 34698082 34698391 -116085162 + AluSx SINE Alu 1 303 -9 896 209 0 0 chr11 34698532 34698680 -116084873 + FRAM SINE Alu 1 146 -30 21 36 0 0 chr11 34698686 34698714 -116084839 + AT_rich Low_complexity Low_complexity 1 28 0 301 302 119 0 chr11 34698876 34699002 -116084551 - L2 LINE L2 -2 3311 3171 866 141 7 7 chr11 34699012 34699147 -116084406 + AluJo SINE Alu 1 135 -177 1526 167 44 24 chr11 34699147 34699441 -116084112 + AluJo SINE Alu 1 300 -12 1987 108 65 0 chr11 34699443 34699721 -116083832 + AluSg SINE Alu 1 296 -14 600 222 45 57 chr11 34700362 34700538 -116083015 + MER5B DNA MER1_type 2 175 -3 2073 124 7 0 chr11 34700546 34700837 -116082716 + AluSx SINE Alu 4 296 -16 421 231 0 0 chr11 34700861 34700939 -116082614 - Charlie4 DNA MER1_type -17 1944 1867 663 163 47 16 chr11 34700990 34701119 -116082434 - FLAM_A SINE Alu 0 133 1 508 176 84 53 chr11 34701203 34701334 -116082219 - Charlie4 DNA MER1_type -1802 159 25 2003 110 39 29 chr11 34701742 34701865 -116081688 + AluSx SINE Alu 1 121 -191 2284 105 0 0 chr11 34701865 34702191 -116081362 + AluSx SINE Alu 1 326 0 2003 110 39 29 chr11 34702191 34702373 -116081180 + AluSx SINE Alu 121 312 0 2004 139 3 0 chr11 34702703 34702998 -116080555 + AluJb SINE Alu 1 296 -16 3330 166 77 42 chr11 34703047 34703322 -116080231 - L1MB8 LINE L1 0 6178 5914 1778 172 17 0 chr11 34703322 34703613 -116079940 - AluJb SINE Alu -15 297 2 3330 166 77 42 chr11 34703613 34704170 -116079383 - L1MB8 LINE L1 -264 5914 5378 1490 138 0 24 chr11 34704170 34704416 -116079137 + AluSg/x SINE Alu 69 308 -2 3330 166 77 42 chr11 34704416 34704435 -116079118 - L1MB8 LINE L1 -800 5378 5361 771 182 0 0 chr11 34704435 34704556 -116078997 - FLAM_A SINE Alu -12 121 1 3330 166 77 42 chr11 34704556 34704661 -116078892 - L1MB8 LINE L1 -817 5361 5190 1087 166 156 70 chr11 34704747 34704807 -116078746 - Charlie1 DNA MER1_type 0 2761 2708 2186 90 14 3 chr11 34704807 34705096 -116078457 + AluSg SINE Alu 1 292 -18 1087 166 156 70 chr11 34705096 34705452 -116078101 - Charlie1 DNA MER1_type -53 2708 2309 773 222 0 0 chr11 34705620 34705803 -116077750 + FRAM SINE Alu 1 47 0 2213 111 0 13 chr11 34706616 34706922 -116076631 - AluSg SINE Alu -3 307 6 2226 103 0 31 chr11 34707203 34707524 -116076029 + AluY SINE Alu 1 311 0 705 143 9 0 chr11 34708827 34708932 -116074621 + FLAM_C SINE Alu 14 119 -24 23 0 0 0 chr11 34708940 34708963 -116074590 + AT_rich Low_complexity Low_complexity 1 23 0 2397 93 0 6 chr11 34709199 34709511 -116074042 + AluSx SINE Alu 1 310 -2 377 242 155 19 chr11 34710172 34710333 -116073220 + L1MC5 LINE L1 7749 7931 -30 245 199 273 28 chr11 34710603 34710779 -116072774 + L1MC4 LINE L1 7162 7380 -662 270 183 65 54 chr11 34710843 34710936 -116072617 + L1MC5 LINE L1 7301 7394 -567 409 257 163 47 chr11 34711056 34711302 -116072251 + L1MC4 LINE L1 7617 7924 -118 1464 152 17 42 chr11 34711302 34711442 -116072111 + AluJb SINE Alu 3 134 -178 2269 93 3 3 chr11 34711442 34711752 -116071801 + AluSx SINE Alu 1 310 -2 1464 152 17 42 chr11 34711752 34711900 -116071653 + AluJb SINE Alu 134 284 -28 409 257 163 47 chr11 34711900 34712034 -116071519 + L1MC4 LINE L1 7924 8041 -1 351 209 301 13 chr11 34714147 34714300 -116069253 + MIR SINE MIR 32 228 -34 532 154 0 0 chr11 34714320 34714398 -116069155 + AluSx SINE Alu 3 80 -233 2340 51 3 42 chr11 34714400 34714711 -116068842 + AluY SINE Alu 1 299 -12 1543 102 58 9 chr11 34714711 34714935 -116068618 + AluSx SINE Alu 66 302 -8 794 138 24 0 chr11 34715344 34715467 -116068086 - MER46A DNA MER2_type -84 152 27 1445 68 0 0 chr11 34715476 34715653 -116067900 - AluSg/x SINE Alu -10 302 126 2037 98 6 35 chr11 34715653 34715969 -116067584 - AluY SINE Alu -4 307 1 225 133 0 0 chr11 34715969 34715999 -116067554 - MER46A DNA MER2_type -206 30 1 300 27 0 0 chr11 34716000 34716037 -116067516 + (TA)n Simple_repeat Simple_repeat 2 38 0 2336 103 0 0 chr11 34716040 34716352 -116067201 - AluSx SINE Alu 0 312 1 1972 145 7 0 chr11 34716530 34716826 -116066727 - AluSx SINE Alu -14 298 1 227 278 120 0 chr11 34716862 34716970 -116066583 - L1MC4 LINE L1 -31 8011 7891 22 0 0 0 chr11 34716984 34717006 -116066547 + AT_rich Low_complexity Low_complexity 1 22 0 262 286 48 0 chr11 34717039 34717144 -116066409 - L1MC4 LINE L1 -140 7902 7793 1711 161 32 4 chr11 34717157 34717437 -116066116 + AluJo SINE Alu 1 288 -24 2368 67 0 26 chr11 34717470 34717783 -116065770 + AluY SINE Alu 1 305 -6 546 196 35 28 chr11 34717831 34717974 -116065579 + L2 LINE L2 1869 2012 -1302 1543 170 40 14 chr11 34718027 34718303 -116065250 - AluJo SINE Alu -29 283 1 256 254 30 0 chr11 34718305 34718372 -116065181 + L2 LINE L2 1998 2066 -1248 333 0 0 0 chr11 34718377 34718414 -116065139 + (TG)n Simple_repeat Simple_repeat 2 38 0 2342 103 0 0 chr11 34718899 34719209 -116064344 - AluSg SINE Alu 0 310 1 944 138 6 40 chr11 34719964 34720138 -116063415 - FRAM SINE Alu -17 159 1 1885 88 0 4 chr11 34721483 34721733 -116061820 + AluSg SINE Alu 60 308 -2 2237 124 0 0 chr11 34721946 34722253 -116061300 + AluSx SINE Alu 2 308 -4 2220 93 4 0 chr11 34722881 34723185 -116060368 + AluSc SINE Alu 1 305 0 509 182 30 6 chr11 34723289 34723458 -116060095 + L1ME1 LINE L1 4549 4757 -1389 901 46 28 0 chr11 34723496 34723604 -116059949 - HY1 scRNA scRNA -1 111 1 2179 222 35 4 chr11 34723609 34724100 -116059453 + L1ME1 LINE L1 5561 6066 -100 928 125 8 0 chr11 34724117 34724245 -116059308 + AluSq/x SINE Alu 1 129 -183 304 243 14 0 chr11 34724271 34724345 -116059208 + L1ME1 LINE L1 6074 6148 -18 2024 134 0 0 chr11 34724355 34724677 -116058876 + AluSx SINE Alu 1 322 0 2068 171 16 8 chr11 34724707 34725081 -116058472 + L1MB2 LINE L1 5793 6169 -2 305 211 39 59 chr11 34725205 34725369 -116058184 - LTR33 LTR ERVL -184 337 75 283 246 0 0 chr11 34725426 34725487 -116058066 - LTR67 LTR ERVL -2 555 495 913 252 41 31 chr11 34725696 34726014 -116057539 - L1MC4 LINE L1 -20 8022 7702 312 245 103 45 chr11 34726050 34726205 -116057348 - L1MC5 LINE L1 -469 7492 7329 268 266 186 9 chr11 34726206 34726319 -116057234 - L1MC4 LINE L1 -571 7471 7339 2001 146 0 3 chr11 34726384 34726679 -116056874 - AluJb SINE Alu -18 294 1 377 183 24 194 chr11 34726692 34726826 -116056727 + L1MEd LINE L1 991 1064 -5055 738 229 0 0 chr11 34726826 34726948 -116056605 + FLAM_A SINE Alu 1 122 -11 377 183 24 194 chr11 34726948 34727065 -116056488 + L1MEd LINE L1 1064 1199 -4920 1101 141 24 6 chr11 34727092 34727262 -116056291 - AluSq SINE Alu -140 173 1 609 296 60 40 chr11 34727316 34727667 -116055886 + L1MEd LINE L1 1313 1670 -4640 451 288 59 81 chr11 34727815 34728173 -116055380 + L1MEd LINE L1 1870 2219 -4091 2385 84 7 0 chr11 34728218 34728517 -116055036 - AluSp SINE Alu -7 306 6 380 295 48 14 chr11 34728555 34728765 -116054788 + L1MEd LINE L1 2213 2429 -3700 593 244 175 17 chr11 34728774 34728865 -116054688 + L2 LINE L2 2067 2142 -1172 1407 194 3 99 chr11 34728865 34729057 -116054496 - AluJo SINE Alu -18 284 132 279 0 0 0 chr11 34729057 34729088 -116054465 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1407 194 3 99 chr11 34729088 34729209 -116054344 - AluJo SINE Alu -170 132 1 593 244 175 17 chr11 34729209 34729351 -116054202 + L2 LINE L2 2142 2337 -977 840 161 0 32 chr11 34729357 34729512 -116054041 + FRAM SINE Alu 20 169 -7 1096 264 6 54 chr11 34729530 34729864 -116053689 + L2 LINE L2 2343 2660 -654 1220 221 78 10 chr11 34729864 34730172 -116053381 - LTR16B LTR ERVL 0 464 136 499 256 45 8 chr11 34730270 34730403 -116053150 + L2 LINE L2 2661 2798 -516 2826 101 16 0 chr11 34730634 34731001 -116052552 + THE1C LTR MaLR 1 373 -2 851 207 113 35 chr11 34731243 34731272 -116052281 + L1MC4 LINE L1 6805 6830 -1212 4573 106 36 2 chr11 34731272 34731885 -116051668 - MER51A LTR ERV1 0 634 1 851 207 113 35 chr11 34731885 34732111 -116051442 + L1MC4 LINE L1 6830 7080 -962 2371 70 3 0 chr11 34732131 34732415 -116051138 + AluSp SINE Alu 1 285 -28 2273 114 7 0 chr11 34732699 34733005 -116050548 - AluSg SINE Alu -2 308 1 1324 39 0 0 chr11 34733349 34733504 -116050049 + AluY SINE Alu 131 285 -26 1450 83 5 0 chr11 34733531 34733723 -116049830 + AluY SINE Alu 119 311 0 572 216 78 130 chr11 34733835 34733963 -116049590 + L1MC4 LINE L1 7267 7400 -642 2056 116 7 0 chr11 34733963 34734248 -116049305 - AluSx SINE Alu -25 287 1 572 216 78 130 chr11 34734248 34734288 -116049265 + L1MC4 LINE L1 7400 7441 -601 2705 209 46 60 chr11 34734288 34734902 -116048651 - MER77 LTR ERV1 0 605 1 572 216 78 130 chr11 34734902 34735102 -116048451 + L1MC4 LINE L1 7441 7617 -425 351 194 0 0 chr11 34735127 34735200 -116048353 - L1MB3 LINE L1 -202 5969 5897 822 195 7 66 chr11 34735336 34735608 -116047945 - L1MB2 LINE L1 -282 5887 5660 633 138 4 8 chr11 34735615 34735848 -116047705 + AluJb SINE Alu 6 307 -5 1851 172 32 130 chr11 34735849 34736207 -116047346 - L1MB2 LINE L1 -499 5672 5388 2197 117 0 0 chr11 34736207 34736505 -116047048 - AluSx SINE Alu -14 298 1 1851 172 32 130 chr11 34736505 34736745 -116046808 - L1MB2 LINE L1 -783 5388 5126 700 216 0 0 chr11 34736746 34736871 -116046682 - FLAM_C SINE Alu -12 131 7 981 160 27 5 chr11 34736871 34737058 -116046495 - L1MB2 LINE L1 -1005 5141 4951 2169 135 0 0 chr11 34737085 34737389 -116046164 - AluSx SINE Alu -8 304 1 2023 156 0 0 chr11 34738486 34738788 -116044765 - AluSx SINE Alu -10 302 1 2055 93 0 0 chr11 34738918 34739187 -116044366 - AluSx SINE Alu -5 307 39 225 0 0 0 chr11 34741083 34741108 -116042445 + (T)n Simple_repeat Simple_repeat 1 25 0 2199 82 3 17 chr11 34741270 34741582 -116041971 - AluY SINE Alu 0 311 1 1147 214 15 34 chr11 34741740 34742002 -116041551 + MIR SINE MIR 1 257 -5 209 309 0 0 chr11 34742153 34742208 -116041345 + (CTGGGG)n Simple_repeat Simple_repeat 4 58 0 1805 153 36 4 chr11 34742686 34742961 -116040592 - AluJb SINE Alu -26 286 3 1950 145 3 0 chr11 34743093 34743382 -116040171 - AluSx SINE Alu -22 290 1 402 294 21 7 chr11 34743673 34743816 -116039737 + L1MC4a LINE L1 5768 5912 -1896 2707 127 18 48 chr11 34743846 34744198 -116039355 - MSTC LTR MaLR 0 428 90 2260 101 10 0 chr11 34744198 34744496 -116039057 + AluSg SINE Alu 1 301 -9 2707 127 18 48 chr11 34744496 34744584 -116038969 - MSTC LTR MaLR -338 90 1 946 244 5 0 chr11 34745508 34745717 -116037836 - AluJb SINE Alu -102 210 1 2028 145 0 0 chr11 34745738 34746048 -116037505 - AluSx SINE Alu 0 310 1 940 140 86 53 chr11 34746426 34746836 -116036717 - LTR54B LTR ERV1 -4 494 1 2122 117 13 0 chr11 34747037 34747344 -116036209 + AluSq SINE Alu 1 311 -2 207 100 0 0 chr11 34747463 34747493 -116036060 + (T)n Simple_repeat Simple_repeat 1 30 0 186 353 24 24 chr11 34747607 34747692 -116035861 - MIR3 SINE MIR -8 200 116 23 55 0 18 chr11 34748287 34748325 -116035228 + AT_rich Low_complexity Low_complexity 1 39 -15 2327 114 0 0 chr11 34748325 34748632 -116034921 + AluSq SINE Alu 1 307 -6 23 55 0 18 chr11 34748632 34748648 -116034905 + AT_rich Low_complexity Low_complexity 39 54 0 648 35 59 12 chr11 34748648 34748733 -116034820 - HY3 scRNA scRNA -1 100 12 205 171 0 0 chr11 34748874 34748909 -116034644 - MIR SINE MIR -61 147 113 358 250 180 7 chr11 34748919 34749060 -116034493 + MLT1J LTR MaLR 15 218 -286 1941 110 3 66 chr11 34749065 34749383 -116034170 + AluSg1 SINE Alu 1 298 -11 525 257 151 0 chr11 34749512 34749664 -116033889 + MER5A DNA MER1_type 15 189 0 935 157 70 91 chr11 34749764 34749924 -116033629 - L1MB3 LINE L1 -2 6181 6019 192 40 0 0 chr11 34749924 34749949 -116033604 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2155 93 0 4 chr11 34749949 34750229 -116033324 - AluSg SINE Alu -31 279 1 935 157 70 91 chr11 34750229 34750355 -116033198 - L1MB3 LINE L1 -162 6021 5902 888 266 105 53 chr11 34750358 34750719 -116032834 + LTR16A LTR ERVL 16 395 -55 4293 208 48 82 chr11 34750924 34751112 -116032441 - L1MB3 LINE L1 -743 5403 5210 1894 166 3 6 chr11 34751112 34751425 -116032128 - AluJb SINE Alu 0 312 1 4293 208 48 82 chr11 34751425 34751464 -116032089 - L1MB3 LINE L1 -936 5210 5171 2237 112 0 6 chr11 34751464 34751777 -116031776 - AluSq SINE Alu -2 311 1 4293 208 48 82 chr11 34751777 34751861 -116031692 - L1MB3 LINE L1 -975 5171 5086 2250 108 0 7 chr11 34751861 34752166 -116031387 - AluSx SINE Alu -9 303 1 4293 208 48 82 chr11 34752166 34752392 -116031161 - L1MB3 LINE L1 -1060 5086 4854 2106 126 13 0 chr11 34752392 34752693 -116030860 + AluSq SINE Alu 1 305 -8 4293 208 48 82 chr11 34752693 34752995 -116030558 - L1MB3 LINE L1 -1292 4854 4543 810 120 0 0 chr11 34752995 34753120 -116030433 + (TTCC)n Simple_repeat Simple_repeat 3 127 0 1812 139 0 36 chr11 34753127 34753408 -116030145 - AluJo SINE Alu -30 282 12 4293 208 48 82 chr11 34753408 34753464 -116030089 - L1MB3 LINE L1 -1609 4537 4481 2450 144 19 14 chr11 34753464 34753605 -116029948 - L1MA9 LINE L1 -7 6305 6166 204 40 0 0 chr11 34753605 34753630 -116029923 + (TG)n Simple_repeat Simple_repeat 2 26 0 2450 144 19 14 chr11 34753630 34753904 -116029649 - L1MA9 LINE L1 -146 6166 5888 4293 208 48 82 chr11 34753904 34754020 -116029533 - L1MB3 LINE L1 -1665 4481 4363 2439 103 0 0 chr11 34754020 34754332 -116029221 + AluSx SINE Alu 1 312 0 4293 208 48 82 chr11 34754332 34754845 -116028708 - L1MB3 LINE L1 -1783 4363 4112 769 265 64 45 chr11 34754846 34755130 -116028423 + HERV16 LTR ERVL 2352 2629 -2367 2053 112 25 3 chr11 34755130 34755416 -116028137 - AluSx SINE Alu -20 292 1 769 265 64 45 chr11 34755416 34755612 -116027941 + HERV16 LTR ERVL 2629 2922 -2074 470 299 55 0 chr11 34755745 34755872 -116027681 - MIR SINE MIR -111 151 18 180 310 23 81 chr11 34755897 34755984 -116027569 - MIR SINE MIR -110 98 17 2090 151 0 0 chr11 34756048 34756353 -116027200 + AluSx SINE Alu 1 305 -7 540 260 101 18 chr11 34756378 34756547 -116027006 + MIR SINE MIR 16 198 -64 2123 112 0 11 chr11 34756744 34757031 -116026522 + AluSx SINE Alu 1 284 -28 213 39 0 0 chr11 34757417 34757443 -116026110 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2164 106 0 3 chr11 34757450 34757733 -116025820 - AluSg SINE Alu -24 286 5 1528 178 96 7 chr11 34757749 34758019 -116025534 - AluJb SINE Alu -18 294 1 1585 165 204 91 chr11 34758020 34758480 -116025073 + MLT2B1 LTR ERVL 9 520 0 * 2039 268 105 0 chr11 34758480 34759063 -116024490 - MER20B DNA MER1_type -136 647 3 2258 95 3 0 chr11 34759085 34759381 -116024172 - AluSx SINE Alu -15 297 1 447 215 75 3 chr11 34759461 34759604 -116023949 - MIR SINE MIR -65 143 39 253 241 9 107 chr11 34760633 34760648 -116022905 + L2 LINE L2 3171 3186 -86 2110 140 10 0 chr11 34760648 34760948 -116022605 - AluSx SINE Alu -9 303 1 253 241 9 107 chr11 34760948 34761044 -116022509 + L2 LINE L2 3186 3271 -1 527 273 157 12 chr11 34761239 34761520 -116022033 + L1ME4a LINE L1 5491 5825 -296 2617 64 0 0 chr11 34761520 34761831 -116021722 - AluY SINE Alu 0 311 1 527 273 157 12 chr11 34761831 34761868 -116021685 + L1ME4a LINE L1 5825 5855 -266 3542 205 30 27 chr11 34761901 34762075 -116021478 + L1MB2 LINE L1 4465 4637 -1509 2370 89 0 32 chr11 34762075 34762388 -116021165 + AluSq SINE Alu 1 303 -10 3542 205 30 27 chr11 34762388 34763052 -116020501 + L1MB2 LINE L1 4637 5305 -841 906 179 0 6 chr11 34763055 34763211 -116020342 + AluJb SINE Alu 120 274 -38 4480 149 51 37 chr11 34763228 34764019 -116019534 + L1MB2 LINE L1 5310 6121 -50 1426 158 0 138 chr11 34764019 34764368 -116019185 + AluJo SINE Alu 1 301 -11 4480 149 51 37 chr11 34764368 34764418 -116019135 + L1MB2 LINE L1 6121 6169 -2 253 235 0 0 chr11 34764429 34764480 -116019073 + AluSp SINE Alu 120 170 -133 2467 71 0 7 chr11 34764482 34764790 -116018763 - AluY SINE Alu -5 306 1 1694 155 0 36 chr11 34764791 34765069 -116018484 + AluJb SINE Alu 28 295 -17 276 261 99 28 chr11 34765085 34765106 -116018447 + L1MC/D LINE L1 5710 5728 -2080 2039 113 24 0 chr11 34765106 34765398 -116018155 + AluSx SINE Alu 11 309 -3 276 261 99 28 chr11 34765398 34765518 -116018035 + L1MC/D LINE L1 5728 5861 -1947 1784 160 10 10 chr11 34765759 34766052 -116017501 - AluJb SINE Alu -15 297 5 23 0 0 0 chr11 34766055 34766078 -116017475 + AT_rich Low_complexity Low_complexity 1 23 0 738 119 0 0 chr11 34766180 34766307 -116017246 - AluSg/x SINE Alu 0 334 208 422 190 51 0 chr11 34766308 34766387 -116017166 - MSTB2 LTR MaLR -372 85 3 2120 232 47 85 chr11 34766816 34767324 -116016229 - L2 LINE L2 -72 3241 2715 1803 114 12 0 chr11 34767324 34767570 -116015983 - AluSx SINE Alu -19 293 45 2120 232 47 85 chr11 34767570 34767594 -116015959 - L2 LINE L2 -598 2715 2692 13396 24 0 0 chr11 34767594 34769826 -116013727 - L1PA3 LINE L1 -7 6148 3917 2120 232 47 85 chr11 34769826 34769852 -116013701 - L2 LINE L2 -621 2692 2667 1982 139 0 0 chr11 34769852 34770132 -116013421 + AluSx SINE Alu 1 280 -32 245 0 86 0 chr11 34770136 34770171 -116013382 + A-rich Low_complexity Low_complexity 1 38 0 2120 232 47 85 chr11 34770171 34770642 -116012911 - L2 LINE L2 -649 2664 2236 2109 122 3 3 chr11 34770651 34770947 -116012606 + AluSx SINE Alu 1 296 -16 2608 55 0 0 chr11 34770979 34771290 -116012263 + AluY SINE Alu 1 311 0 387 119 0 0 chr11 34771355 34771422 -116012131 + (ATG)n Simple_repeat Simple_repeat 2 68 0 408 104 0 0 chr11 34771565 34771632 -116011921 + (ATG)n Simple_repeat Simple_repeat 2 68 0 2483 65 0 0 chr11 34771632 34771925 -116011628 - AluSx SINE Alu -17 295 3 307 288 42 17 chr11 34772435 34772553 -116011000 - L1ME LINE L1 -462 5659 5539 2234 93 10 0 chr11 34772728 34773018 -116010535 - AluSg SINE Alu -17 293 1 1727 166 58 7 chr11 34773319 34773614 -116009939 + AluJo SINE Alu 1 310 -2 2359 110 0 0 chr11 34773741 34774042 -116009511 + AluSq SINE Alu 1 301 -12 821 125 0 8 chr11 34774205 34774325 -116009228 - FLAM_C SINE Alu -14 119 1 2256 103 13 3 chr11 34774942 34775242 -116008311 + AluSc SINE Alu 1 303 -6 1647 182 26 26 chr11 34775599 34775906 -116007647 - AluJo SINE Alu -5 307 1 2343 90 0 0 chr11 34775916 34776216 -116007337 - AluY SINE Alu -11 300 1 218 254 34 34 chr11 34776269 34776328 -116007225 + L2 LINE L2 3204 3262 -10 355 287 96 12 chr11 34776914 34777081 -116006472 + MIR SINE MIR 5 185 -77 729 145 176 6 chr11 34777097 34777256 -116006297 - AluSq SINE Alu -1 312 127 868 201 43 0 chr11 34777263 34777447 -116006106 - L1MC1 LINE L1 0 6333 6142 691 168 44 0 chr11 34777494 34777607 -116005946 + FLAM_C SINE Alu 1 118 -15 338 0 0 23 chr11 34777607 34777650 -116005903 + (CA)n Simple_repeat Simple_repeat 1 42 0 233 125 0 0 chr11 34777650 34777682 -116005871 + Alu SINE Alu 89 120 -182 275 0 0 28 chr11 34777682 34777718 -116005835 + (CA)n Simple_repeat Simple_repeat 1 35 0 198 0 0 0 chr11 34777744 34777766 -116005787 + (CA)n Simple_repeat Simple_repeat 2 23 0 674 184 0 0 chr11 34777805 34777919 -116005634 - FLAM_A SINE Alu -20 122 9 347 315 103 38 chr11 34778571 34778755 -116004798 - MIR SINE MIR -44 218 23 1702 186 135 35 chr11 34778871 34779413 -116004140 + L1MC4 LINE L1 7442 8037 -5 1283 192 121 11 chr11 34779609 34779890 -116003663 - AluJo SINE Alu 0 312 1 670 255 90 0 chr11 34779935 34780135 -116003418 + MIR SINE MIR 10 227 -35 2054 119 0 11 chr11 34780139 34780425 -116003128 + AluSx SINE Alu 1 283 -29 2135 102 7 0 chr11 34781010 34781293 -116002260 - AluSg SINE Alu -25 285 1 765 164 0 8 chr11 34781303 34781431 -116002122 - FLAM_C SINE Alu -16 127 1 268 320 114 46 chr11 34782134 34782309 -116001244 - L3 LINE CR1 -20 1557 1371 1714 154 13 10 chr11 34782309 34782607 -116000946 + AluJo SINE Alu 1 299 -13 23 0 0 0 chr11 34782623 34782646 -116000907 + AT_rich Low_complexity Low_complexity 1 23 0 1908 129 39 4 chr11 34782760 34783040 -116000513 - AluSx SINE Alu -22 290 1 1418 181 58 24 chr11 34783043 34783335 -116000218 - AluJo SINE Alu -10 302 1 817 152 0 35 chr11 34783994 34784139 -115999414 - FLAM_C SINE Alu -3 140 1 508 191 351 0 chr11 34784185 34784353 -115999200 + MIR SINE MIR 9 235 -27 195 351 91 0 chr11 34784705 34784782 -115998771 + MIR3 SINE MIR 15 98 -110 343 248 111 0 chr11 34784783 34784900 -115998653 - MLT1H LTR MaLR 0 549 420 2214 88 7 3 chr11 34784997 34785280 -115998273 + AluSq SINE Alu 15 298 -15 1034 266 109 20 chr11 34785507 34786113 -115997440 - L2 LINE L2 -50 3263 2612 3724 234 171 20 chr11 34786114 34787496 -115996057 - L2 LINE L2 -453 2861 1272 187 339 43 35 chr11 34787499 34787614 -115995939 - MIR SINE MIR -42 220 105 2456 75 0 7 chr11 34787760 34788067 -115995486 - AluY SINE Alu -6 305 1 2093 132 0 0 chr11 34788325 34788614 -115994939 + AluSx SINE Alu 14 302 -10 1559 130 27 48 chr11 34788793 34789005 -115994548 + L1MB8 LINE L1 5702 5907 -271 2105 108 3 7 chr11 34789005 34789311 -115994242 - AluSx SINE Alu 0 305 1 1559 130 27 48 chr11 34789311 34789428 -115994125 + L1MB8 LINE L1 5907 6025 -153 872 303 64 38 chr11 34790276 34790728 -115992825 + LTR16B LTR ERVL 1 464 0 198 313 131 20 chr11 34791446 34791545 -115992008 - L2 LINE L2 -4 3309 3200 507 200 296 0 chr11 34791979 34792114 -115991439 - MER5B DNA MER1_type -3 175 1 2488 218 238 16 chr11 34792189 34792440 -115991113 + L1MC4 LINE L1 6718 6912 -1130 1747 164 3 33 chr11 34792440 34792744 -115990809 - AluJo SINE Alu -12 300 6 2488 218 238 16 chr11 34792744 34793505 -115990048 + L1MC4 LINE L1 6912 8041 -1 537 287 0 38 chr11 34795767 34795924 -115987629 - MIR3 SINE MIR -18 190 40 2414 95 0 0 chr11 34796090 34796395 -115987158 - AluSg SINE Alu -5 305 1 2086 154 3 0 chr11 34796640 34796951 -115986602 - AluSx SINE Alu 0 312 1 1748 153 7 24 chr11 34797153 34797447 -115986106 - AluJo SINE Alu -23 289 1 571 241 53 0 chr11 34797516 34797649 -115985904 - MIR SINE MIR -5 257 118 819 225 0 6 chr11 34797670 34797843 -115985710 - AluJo SINE Alu -20 292 121 196 337 54 11 chr11 34797863 34797955 -115985598 - L3b LINE CR1 -369 1214 1119 324 102 0 0 chr11 34798233 34798282 -115985271 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 2242 136 95 3 chr11 34798540 34798930 -115984623 - MSTB LTR MaLR 0 426 1 194 0 39 0 chr11 34799442 34799468 -115984085 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 475 312 35 69 chr11 34799883 34800114 -115983439 - L2 LINE L2 -62 3210 2988 1415 94 80 0 chr11 34800315 34800528 -115983025 + MER30 DNA MER1_type 1 230 0 579 301 235 26 chr11 34800647 34801535 -115982018 - L2 LINE L2 -657 2657 1584 977 298 69 16 chr11 34801691 34802054 -115981499 - L2 LINE L2 -12 3301 2920 300 354 113 40 chr11 34802227 34802786 -115980767 + L2 LINE L2 2626 3231 -41 2180 110 0 16 chr11 34803107 34803424 -115980129 - AluSx SINE Alu 0 312 1 2350 113 0 0 chr11 34803430 34803740 -115979813 - AluSg SINE Alu 0 310 1 2368 77 0 0 chr11 34804015 34804300 -115979253 - AluSc SINE Alu -24 285 1 379 221 76 35 chr11 34805376 34805521 -115978032 - MIR SINE MIR -109 153 3 1799 145 26 23 chr11 34805841 34806144 -115977409 - AluJb SINE Alu -8 304 1 2155 129 0 10 chr11 34807586 34807896 -115975657 + AluSx SINE Alu 1 307 -5 2062 82 42 49 chr11 34808308 34808614 -115974939 - AluSp SINE Alu -9 304 1 277 372 115 0 chr11 34808851 34808999 -115974554 + MIR3 SINE MIR 37 201 -7 387 0 0 0 chr11 34809016 34809059 -115974494 + (TG)n Simple_repeat Simple_repeat 2 44 0 1992 142 3 0 chr11 34809060 34809348 -115974205 - AluSx SINE Alu -23 289 1 357 240 134 39 chr11 34809804 34809983 -115973570 - L1MC4 LINE L1 -15 8027 7832 21 36 0 0 chr11 34810852 34810880 -115972673 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 34811763 34811786 -115971767 + AT_rich Low_complexity Low_complexity 1 23 0 1662 164 38 7 chr11 34812675 34812962 -115970591 + AluJo SINE Alu 1 296 -16 1797 160 0 7 chr11 34815209 34815514 -115968039 - AluJb SINE Alu 0 308 6 1866 136 14 7 chr11 34815553 34815833 -115967720 - AluSx SINE Alu -30 282 1 1809 151 0 25 chr11 34816158 34816442 -115967111 + AluJo SINE Alu 6 282 -30 209 105 0 26 chr11 34816444 34816482 -115967071 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 231 253 25 0 chr11 34816659 34816738 -115966815 + (TA)n Simple_repeat Simple_repeat 2 82 0 367 284 151 46 chr11 34818370 34818588 -115964965 + MIR SINE MIR 20 260 -2 212 263 13 26 chr11 34818588 34818664 -115964889 + (TAG)n Simple_repeat Simple_repeat 3 77 0 29 60 0 0 chr11 34821584 34821634 -115961919 + AT_rich Low_complexity Low_complexity 1 50 0 383 326 41 0 chr11 34822875 34823022 -115960531 - MIR SINE MIR -59 203 51 1385 213 129 23 chr11 34823413 34823840 -115959713 - L1ME3A LINE L1 -249 5921 5450 185 194 0 0 chr11 34824074 34824105 -115959448 + L2 LINE L2 3255 3285 -28 507 280 236 16 chr11 34824113 34824699 -115958854 - L2 LINE L2 -6 3307 2594 982 224 29 0 chr11 34824733 34824979 -115958574 - L1ME3A LINE L1 -918 5228 4976 364 278 67 93 chr11 34825396 34825539 -115958014 - L1MC4 LINE L1 0 8042 7897 2231 102 3 0 chr11 34825539 34825824 -115957729 - AluSx SINE Alu -26 286 1 364 278 67 93 chr11 34825824 34826141 -115957412 - L1MC4 LINE L1 -145 7897 7594 2318 96 0 0 chr11 34826154 34826446 -115957107 - AluSx SINE Alu -9 303 12 933 231 203 48 chr11 34826668 34827087 -115956466 - L1MC4 LINE L1 -749 7293 6810 194 350 73 8 chr11 34827682 34827805 -115955748 + L2 LINE L2 3183 3313 0 196 339 110 18 chr11 34827825 34827934 -115955619 + MIR SINE MIR 31 149 -59 376 272 138 46 chr11 34827937 34828235 -115955318 - MER102a DNA MER1_type -2 328 7 847 210 0 25 chr11 34828436 34828598 -115954955 - FRAM SINE Alu -18 158 1 2608 49 0 3 chr11 34828610 34829100 -115954453 - AluY SINE Alu 0 489 1 260 293 28 47 chr11 34829407 34829513 -115954040 - MIR SINE MIR -78 184 81 2094 99 0 25 chr11 34829518 34829802 -115953751 + AluSx SINE Alu 1 277 -35 279 54 0 0 chr11 34829802 34829839 -115953714 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 2388 203 61 85 chr11 34829930 34830210 -115953343 + MER63D DNA MER1_type 8 293 -768 420 20 0 0 chr11 34830210 34830259 -115953294 + (TATAG)n Simple_repeat Simple_repeat 2 50 0 2388 203 61 85 chr11 34830259 34830899 -115952654 + MER63D DNA MER1_type 293 906 -155 5811 173 30 9 chr11 34830905 34831957 -115951596 - Tigger6a DNA MER2_type -7 1076 3 836 176 27 0 chr11 34831963 34832111 -115951442 + MER63D DNA MER1_type 911 1062 0 605 287 24 83 chr11 34832438 34832776 -115950777 - MLT1I LTR MaLR -19 390 73 808 159 7 29 chr11 34832833 34832971 -115950582 + MER2 DNA MER2_type 1 135 -210 1644 150 11 28 chr11 34832972 34833258 -115950295 + AluJo SINE Alu 1 281 -31 486 49 0 0 chr11 34833261 34833322 -115950231 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1732 148 27 40 chr11 34833368 34833552 -115950001 - AluJb SINE Alu -18 294 114 240 35 0 0 chr11 34833552 34833581 -115949972 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1732 148 27 40 chr11 34833581 34833694 -115949859 - AluJb SINE Alu -198 114 1 659 196 119 26 chr11 34833695 34833889 -115949664 + MER2 DNA MER2_type 126 337 -8 290 165 44 121 chr11 34834080 34834145 -115949408 + MER5A DNA MER1_type 9 68 -121 2128 113 0 3 chr11 34834145 34834460 -115949093 + AluSx SINE Alu 1 314 0 290 165 44 121 chr11 34834460 34834484 -115949069 + MER5A DNA MER1_type 68 92 -97 195 235 0 0 chr11 34834509 34834607 -115948946 + T-rich Low_complexity Low_complexity 1 98 0 426 130 60 10 chr11 34834863 34834963 -115948590 + CT-rich Low_complexity Low_complexity 2 106 0 667 181 39 0 chr11 34835425 34835552 -115948001 - FLAM_C SINE Alu 0 133 2 1911 183 68 7 chr11 34835573 34835984 -115947569 - L1MB8 LINE L1 -101 6077 5642 2213 106 0 0 chr11 34836364 34836666 -115946887 - AluSx SINE Alu 0 302 1 210 336 72 0 chr11 34836945 34837070 -115946483 + L2 LINE L2 2606 2739 -575 2296 92 3 0 chr11 34837474 34837768 -115945785 - AluSx SINE Alu -17 295 1 686 305 64 17 chr11 34838200 34838436 -115945117 - MIR SINE MIR -4 258 12 2337 101 0 19 chr11 34838890 34839206 -115944347 - AluSg SINE Alu 0 310 1 258 105 0 0 chr11 34840144 34840182 -115943371 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 2273 97 7 0 chr11 34840184 34840472 -115943081 - AluSx SINE Alu -22 290 1 970 230 169 16 chr11 34840700 34841079 -115942474 + L2 LINE L2 2873 3309 -4 276 290 28 19 chr11 34841085 34841192 -115942361 + L2 LINE L2 3158 3265 -7 187 258 48 16 chr11 34841363 34841425 -115942128 + L2 LINE L2 3243 3306 -7 34 72 0 0 chr11 34841760 34841829 -115941724 + GC_rich Low_complexity Low_complexity 1 69 0 28 29 0 0 chr11 34842091 34842126 -115941427 + GC_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr11 34842462 34842496 -115941057 + GC_rich Low_complexity Low_complexity 1 34 0 237 158 18 35 chr11 34845358 34845415 -115938138 - L2 LINE L2 0 3272 3217 740 203 6 25 chr11 34845426 34845589 -115937964 + MIR SINE MIR 93 252 -10 205 232 36 0 chr11 34845619 34845675 -115937878 - L2 LINE L2 -26 3246 3189 1804 167 17 53 chr11 34846192 34846551 -115937002 - L1P LINE L1 -3389 2757 2412 183 129 0 0 chr11 34846675 34846706 -115936847 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 468 294 156 12 chr11 34846831 34846991 -115936562 - MER5A DNA MER1_type 0 189 7 2890 260 106 13 chr11 34847000 34848324 -115935229 - L2 LINE L2 -141 3172 1719 351 333 17 0 chr11 34849308 34849425 -115934128 - L2 LINE L2 -4 3268 3150 488 261 110 23 chr11 34849458 34849698 -115933855 - Charlie8 DNA MER1_type -1032 1385 36 4599 198 110 34 chr11 34849739 34851099 -115932454 - L1ME1 LINE L1 -5 6161 4905 1044 201 33 9 chr11 34851099 34851313 -115932240 - MER20 DNA MER1_type 0 219 1 4599 198 110 34 chr11 34851313 34852167 -115931386 - L1ME1 LINE L1 -1261 4905 4117 2224 113 0 7 chr11 34852167 34852460 -115931093 + AluSq SINE Alu 1 291 -22 4599 198 110 34 chr11 34852460 34852593 -115930960 - L1ME1 LINE L1 -2049 4117 3995 2030 145 0 0 chr11 34852593 34852907 -115930646 + AluSx SINE Alu 1 314 0 4599 198 110 34 chr11 34852907 34852970 -115930583 - L1ME1 LINE L1 -2171 3995 3559 2188 139 0 0 chr11 34853071 34853374 -115930179 - AluSx SINE Alu -9 303 1 197 219 0 0 chr11 34853498 34853539 -115930014 + MIR SINE MIR 97 137 -71 27 49 0 0 chr11 34853775 34853816 -115929737 + AT_rich Low_complexity Low_complexity 1 41 0 2472 127 33 0 chr11 34853868 34854231 -115929322 - THE1C LTR MaLR 0 375 1 2214 113 0 17 chr11 34854729 34855030 -115928523 - AluSx SINE Alu -14 298 3 390 306 125 23 chr11 34855443 34855659 -115927894 - L1ME LINE L1 -345 5776 5539 1925 164 7 0 chr11 34855834 34856127 -115927426 - AluSx SINE Alu -17 295 1 829 258 39 32 chr11 34856127 34856558 -115926995 - L1ME LINE L1 -584 5582 5052 1196 134 2 1 chr11 34856670 34857998 -115925555 - ALR/Alpha Satellite centromeric 0 1329 1 357 314 0 0 chr11 34858370 34858475 -115925078 - MIR SINE MIR -65 143 39 205 282 64 0 chr11 34859380 34859458 -115924095 + L2 LINE L2 3212 3294 -19 285 248 129 10 chr11 34859760 34859861 -115923692 + L2 LINE L2 3197 3309 -4 278 299 20 27 chr11 34861219 34861366 -115922187 + MIR SINE MIR 53 198 -64 386 299 130 0 chr11 34861390 34861567 -115921986 - MIR SINE MIR -10 252 53 618 254 21 0 chr11 34861707 34861849 -115921704 + MIR SINE MIR 13 157 -105 191 269 13 13 chr11 34861901 34861979 -115921574 + MIR SINE MIR 147 224 -38 1540 201 5 69 chr11 34862552 34862841 -115920712 + MLT1A1 LTR MaLR 1 307 -58 201 39 0 0 chr11 34862841 34862867 -115920686 + (TC)n Simple_repeat Simple_repeat 2 27 0 1540 201 5 69 chr11 34862867 34862892 -115920661 + MLT1A1 LTR MaLR 307 332 -33 542 28 14 0 chr11 34862892 34862964 -115920589 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 1732 139 0 74 chr11 34862964 34863274 -115920279 - AluSx SINE Alu -22 290 4 1540 201 5 69 chr11 34863274 34863335 -115920218 + MLT1A1 LTR MaLR 330 354 -11 502 257 45 17 chr11 34864092 34864271 -115919282 + MLT1L LTR MaLR 135 318 -297 719 252 145 12 chr11 34864285 34864513 -115919040 + MLT1L LTR MaLR 266 615 0 988 258 83 67 chr11 34864873 34865393 -115918160 - L1MC4a LINE L1 -745 5555 5297 719 253 176 41 chr11 34865554 34865918 -115917635 - MLT1J2 LTR MaLR 0 450 34 243 0 0 0 chr11 34866568 34866595 -115916958 + (GA)n Simple_repeat Simple_repeat 1 27 0 2806 123 16 23 chr11 34867193 34867234 -115916319 - MSTA LTR MaLR 0 428 388 2899 16 0 0 chr11 34867234 34867547 -115916006 + AluYb8 SINE Alu 1 313 -5 2806 123 16 23 chr11 34867547 34867935 -115915618 - MSTA LTR MaLR -40 388 2 403 209 29 19 chr11 34869509 34869614 -115913939 + MIR SINE MIR 145 250 -12 454 301 27 7 chr11 34869795 34869941 -115913612 - MIR SINE MIR -112 150 2 194 167 62 0 chr11 34870028 34870076 -115913477 - L2 LINE L2 -8 3264 3214 457 299 72 12 chr11 34870084 34870251 -115913302 - MER91A DNA MER1_type -19 177 1 210 345 55 9 chr11 34870657 34870767 -115912786 - MIR SINE MIR -119 143 29 412 75 0 170 chr11 34870780 34870874 -115912679 + MADE1 DNA Mariner 3 80 0 520 281 65 19 chr11 34871778 34872162 -115911391 - L2 LINE L2 -213 3059 2595 333 0 0 0 chr11 34873407 34873444 -115910109 + (TG)n Simple_repeat Simple_repeat 2 38 0 232 214 18 0 chr11 34873446 34873502 -115910051 + (TA)n Simple_repeat Simple_repeat 2 58 0 765 288 9 35 chr11 34873559 34873785 -115909768 + MIR SINE MIR 28 247 -15 203 315 144 0 chr11 34873826 34873937 -115909616 + L2 LINE L2 1711 1837 -1477 523 203 31 47 chr11 34873938 34874066 -115909487 - MER106A DNA MER1_type 0 236 111 1678 265 150 43 chr11 34874067 34875010 -115908543 + L2 LINE L2 2163 3208 -105 1262 109 0 0 chr11 34875010 34875175 -115908378 - AluSq SINE Alu -140 173 9 383 274 0 11 chr11 34875178 34875273 -115908280 + L2 LINE L2 3216 3309 -4 2321 28 0 0 chr11 34876756 34877038 -115906515 - L1P LINE L1 -818 5328 5047 272 305 47 47 chr11 34877043 34877171 -115906382 + L2 LINE L2 3182 3309 -4 4420 154 34 73 chr11 34877171 34877205 -115906348 - Charlie1 DNA MER1_type 0 2761 2727 1617 186 10 7 chr11 34877205 34877511 -115906042 - AluJb SINE Alu -5 307 1 4420 154 34 73 chr11 34877511 34877950 -115905603 - Charlie1 DNA MER1_type -34 2727 2273 1670 174 7 14 chr11 34877950 34878231 -115905322 - AluJb SINE Alu -27 285 7 4420 154 34 73 chr11 34878231 34878677 -115904876 - Charlie1 DNA MER1_type -488 2273 1879 2136 131 0 3 chr11 34878677 34878968 -115904585 - AluSx SINE Alu -22 290 1 4420 154 34 73 chr11 34878968 34879034 -115904519 - Charlie1 DNA MER1_type -882 1879 1812 1518 154 47 50 chr11 34879040 34879338 -115904215 + MLT1B LTR MaLR 3 299 -91 358 230 44 62 chr11 34879861 34879974 -115903579 - MIR SINE MIR -65 143 33 210 349 47 12 chr11 34880004 34880090 -115903463 - MIR3 SINE MIR -110 98 10 309 325 109 18 chr11 34880553 34880836 -115902717 - MLT1K LTR MaLR -112 476 168 183 278 153 56 chr11 34881755 34881899 -115901654 - MIR SINE MIR -70 192 35 225 211 29 115 chr11 34881902 34882006 -115901547 + MLT1L LTR MaLR 39 133 -482 364 300 127 17 chr11 34882044 34882281 -115901272 + MLT1L LTR MaLR 240 502 -113 424 231 94 147 chr11 34882404 34882724 -115900829 + MLT1J LTR MaLR 205 507 -4 1957 150 0 3 chr11 34882961 34883255 -115900298 - AluJb SINE Alu -19 293 1 502 251 159 43 chr11 34884055 34884162 -115899391 - MIR3 SINE MIR -50 212 119 1438 190 100 31 chr11 34884162 34884483 -115899070 + MER2 DNA MER2_type 2 344 0 502 251 159 43 chr11 34884483 34884564 -115898989 - MIR3 SINE MIR -143 119 5 252 246 0 0 chr11 34885175 34885232 -115898321 - L2 LINE L2 0 3313 3257 574 162 86 19 chr11 34885330 34885435 -115898118 - MER81 DNA DNA 0 114 3 421 254 122 17 chr11 34885470 34885651 -115897902 - L2 LINE L2 -6 3307 3108 379 250 0 0 chr11 34885840 34885920 -115897633 + L1M1 LINE L1 418 497 -7068 416 277 15 22 chr11 34885975 34886112 -115897441 + L2 LINE L2 3176 3311 -2 374 335 49 57 chr11 34886139 34886384 -115897169 + L2 LINE L2 3028 3270 -2 1450 168 29 29 chr11 34886847 34887127 -115896426 + MER7A DNA MER2_type 1 278 -68 350 349 33 7 chr11 34887226 34887378 -115896175 - MER5A DNA MER1_type 0 189 34 232 194 45 60 chr11 34887378 34887445 -115896108 - MER34 LTR ERV1 -4 538 473 10000 157 206 21 chr11 34887448 34889549 -115894004 + L1M1 LINE L1 16 2759 -4806 3461 135 23 28 chr11 34889543 34889786 -115893767 + L1MA3 LINE L1 5623 5866 -439 * 2483 121 19 25 chr11 34889786 34890151 -115893402 - THE1B LTR MaLR -1 363 1 3461 135 23 28 chr11 34890151 34890523 -115893030 + L1MA3 LINE L1 5866 6235 -70 2508 36 0 13 chr11 34890651 34890952 -115892601 + AluY SINE Alu 1 297 -14 442 256 70 17 chr11 34892225 34892397 -115891156 + MIR SINE MIR 2 182 -80 192 200 0 0 chr11 34892897 34892937 -115890616 + (CA)n Simple_repeat Simple_repeat 1 40 0 1330 103 17 0 chr11 34894032 34894207 -115889346 + AluSq SINE Alu 1 178 -135 451 170 10 60 chr11 34895398 34895498 -115888055 - MER5B DNA MER1_type -83 95 1 739 275 130 43 chr11 34897473 34897935 -115885618 + MLT1J LTR MaLR 8 509 -2 335 306 35 0 chr11 34898008 34898093 -115885460 - MIR SINE MIR -91 117 30 2048 107 25 4 chr11 34898799 34899079 -115884474 + AluSg SINE Alu 1 286 -24 383 306 57 26 chr11 34900080 34900273 -115883280 + MIR SINE MIR 8 206 -56 30 59 0 0 chr11 34900706 34900757 -115882796 + AT_rich Low_complexity Low_complexity 1 51 0 2123 126 0 10 chr11 34901755 34902064 -115881489 + AluJb SINE Alu 1 306 -6 25 0 0 0 chr11 34902779 34902804 -115880749 + AT_rich Low_complexity Low_complexity 1 25 0 681 240 29 6 chr11 34903756 34903927 -115879626 + MER5B DNA MER1_type 4 178 0 195 114 0 0 chr11 34904479 34904514 -115879039 + (TTG)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr11 34904592 34904613 -115878940 + AT_rich Low_complexity Low_complexity 1 21 0 477 293 103 0 chr11 34904721 34904895 -115878658 + MIR SINE MIR 61 252 -10 271 311 66 33 chr11 34904913 34905064 -115878489 - L2 LINE L2 -178 3094 2939 250 306 0 56 chr11 34905066 34905156 -115878397 + MIR3 SINE MIR 73 158 -50 243 189 0 0 chr11 34906262 34906315 -115877238 + (ATG)n Simple_repeat Simple_repeat 1 53 0 219 270 95 32 chr11 34906857 34906983 -115876570 - MIR SINE MIR -10 252 119 213 290 22 91 chr11 34907735 34907906 -115875647 - MIR SINE MIR -70 138 34 1592 164 0 23 chr11 34908118 34908380 -115875173 - AluSx SINE Alu -14 298 43 302 292 29 36 chr11 34909707 34909844 -115873709 + MIR SINE MIR 96 231 -31 661 268 98 38 chr11 34909876 34910111 -115873442 + MIR SINE MIR 14 262 0 28 0 0 0 chr11 34910595 34910623 -115872930 + AT_rich Low_complexity Low_complexity 1 28 0 5198 89 12 6 chr11 34910633 34911296 -115872257 - PABL_B LTR ERV1 0 667 1 648 84 25 299 chr11 34911318 34911592 -115871961 - Tigger7 DNA MER2_type 0 2587 2389 530 284 77 64 chr11 34911780 34912107 -115871446 - L2 LINE L2 -106 3166 2836 723 300 65 14 chr11 34912160 34912437 -115871116 + MLT1F1 LTR MaLR 2 292 -250 2162 190 35 76 chr11 34912452 34913032 -115870521 - MER34B LTR ERV1 -5 560 5 1097 159 65 19 chr11 34913036 34913250 -115870303 + MLT1F1 LTR MaLR 343 566 -1 407 184 0 69 chr11 34913271 34913358 -115870195 + MIR3 SINE MIR 76 156 -52 476 221 107 27 chr11 34913490 34913639 -115869914 - MIR SINE MIR 0 262 102 23 0 0 0 chr11 34914234 34914257 -115869296 + AT_rich Low_complexity Low_complexity 1 23 0 1324 177 28 54 chr11 34914625 34914657 -115868896 - L1MB4 LINE L1 0 6180 6149 2308 99 0 3 chr11 34914657 34914959 -115868594 - AluSx SINE Alu -11 301 1 1324 177 28 54 chr11 34914959 34915243 -115868310 - L1MB4 LINE L1 -31 6149 5872 195 385 72 36 chr11 34915261 34915456 -115868097 + MIR3 SINE MIR 3 204 -4 308 280 13 0 chr11 34915551 34915626 -115867927 - L2 LINE L2 -43 3229 3154 270 292 58 50 chr11 34916175 34916295 -115867258 - MIR SINE MIR -122 140 20 2024 116 3 7 chr11 34916339 34916633 -115866920 - AluY SINE Alu -18 293 1 22 35 0 0 chr11 34916643 34916672 -115866881 + AT_rich Low_complexity Low_complexity 1 29 0 816 199 0 0 chr11 34916728 34916859 -115866694 - FLAM_C SINE Alu -10 133 3 569 269 70 76 chr11 34916907 34917249 -115866304 - L1MEd LINE L1 -4885 1234 895 593 194 26 65 chr11 34917428 34917583 -115865970 - MER53 DNA DNA -13 176 28 1541 242 176 35 chr11 34917642 34918266 -115865287 - L1MEd LINE L1 -5406 713 2 313 368 38 8 chr11 34919674 34919807 -115863746 - L2 LINE L2 -2 3270 3134 776 120 0 0 chr11 34919905 34920005 -115863548 - AluSq/x SINE Alu -194 118 19 1940 141 4 0 chr11 34920179 34920456 -115863097 + AluSx SINE Alu 1 278 -34 207 0 0 0 chr11 34920456 34920479 -115863074 + (CA)n Simple_repeat Simple_repeat 2 24 0 188 205 26 0 chr11 34920624 34920663 -115862890 - L2 LINE L2 -5 3308 3269 784 192 0 0 chr11 34920855 34920985 -115862568 - FLAM_A SINE Alu 0 133 4 617 290 97 45 chr11 34922515 34922899 -115860654 + MLT1I LTR MaLR 38 409 0 285 174 130 54 chr11 34923257 34923349 -115860204 + LTR33A LTR ERVL 421 519 -4 360 336 27 7 chr11 34923564 34923710 -115859843 - MIR3 SINE MIR -43 165 17 288 299 0 0 chr11 34924046 34924123 -115859430 + MIR SINE MIR 86 162 -100 2719 36 0 0 chr11 34924555 34924862 -115858691 + AluY SINE Alu 1 307 -4 489 331 50 0 chr11 34925415 34925575 -115857978 - MER91A DNA MER1_type -27 169 2 792 244 48 35 chr11 34926215 34926526 -115857027 + L1ME4a LINE L1 5584 5898 -223 668 68 0 0 chr11 34926672 34926760 -115856793 - Tigger3(Golem) DNA MER2_type -653 2376 2289 3730 147 41 23 chr11 34926762 34927341 -115856212 - L1MA4 LINE L1 -366 5934 5367 198 0 0 0 chr11 34927351 34927373 -115856180 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2989 88 7 7 chr11 34927373 34927773 -115855780 - L1PA10 LINE L1 -17 6151 5749 3730 147 41 23 chr11 34927773 34928439 -115855114 - L1MA4 LINE L1 -933 5367 4666 222 156 22 0 chr11 34928439 34928484 -115855069 - MIR SINE MIR -72 190 145 22 35 0 0 chr11 34929579 34929608 -115853945 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 34929689 34929710 -115853843 + AT_rich Low_complexity Low_complexity 1 21 0 224 170 224 0 chr11 34931535 34931593 -115851960 + MIR SINE MIR 88 159 -49 22 0 0 0 chr11 34931734 34931756 -115851797 + AT_rich Low_complexity Low_complexity 1 22 0 1909 175 6 6 chr11 34932114 34932446 -115851107 + MER47A DNA MER2_type 35 366 0 356 238 24 0 chr11 34932826 34932910 -115850643 - LTR67 LTR ERVL -1 556 471 9655 192 66 64 chr11 34932910 34936033 -115847520 + L1MDa LINE L1 19 3157 -3383 335 320 134 43 chr11 34936048 34936420 -115847133 - LTR67 LTR ERVL -116 441 36 351 235 109 17 chr11 34937107 34937226 -115846327 + MIR SINE MIR 11 140 -122 510 285 10 48 chr11 34937731 34937755 -115845798 + MIR SINE MIR 43 66 -196 1577 193 13 10 chr11 34937755 34938060 -115845493 + AluJb SINE Alu 1 306 -6 510 285 10 48 chr11 34938060 34938242 -115845311 + MIR SINE MIR 66 241 -21 368 292 31 37 chr11 34938491 34938652 -115844901 + MIR SINE MIR 32 191 -71 344 314 22 23 chr11 34938906 34939091 -115844462 + MIR SINE MIR 62 242 -20 241 262 187 0 chr11 34939095 34939202 -115844351 - MIR SINE MIR -55 207 81 797 169 41 23 chr11 34939758 34939930 -115843623 - MER5B DNA MER1_type -3 175 1 2158 125 6 10 chr11 34940110 34940423 -115843130 - AluSx SINE Alu 0 312 1 737 319 23 21 chr11 34940730 34941165 -115842388 + L2 LINE L2 2057 2492 -822 1950 147 3 0 chr11 34941292 34941584 -115841969 + AluSx SINE Alu 14 306 -6 2433 117 20 3 chr11 34942016 34942368 -115841185 - L1PA15 LINE L1 -5 6160 5803 660 169 18 54 chr11 34942455 34942621 -115840932 - MIR SINE MIR 0 262 103 339 229 100 116 chr11 34943556 34943866 -115839687 - L2 LINE L2 -1 3312 3008 490 243 39 70 chr11 34944220 34944424 -115839129 - MIR SINE MIR -19 243 43 180 325 25 50 chr11 34945763 34945883 -115837670 - L2 LINE L2 -13 3300 3184 322 257 22 40 chr11 34945945 34946129 -115837424 + MER20B DNA MER1_type 2 214 -5 477 0 0 0 chr11 34946532 34946585 -115836968 + (TG)n Simple_repeat Simple_repeat 2 54 0 199 250 0 0 chr11 34946909 34946961 -115836592 + L2 LINE L2 3262 3313 0 477 329 66 21 chr11 34947088 34947331 -115836222 - MIR SINE MIR 0 262 9 331 244 47 47 chr11 34947599 34947726 -115835827 - L2 LINE L2 -218 3054 2928 255 131 16 98 chr11 34947751 34947812 -115835741 - MADE1 DNA Mariner 0 80 25 1013 238 112 35 chr11 34948583 34948652 -115834901 - MLT1K LTR MaLR -2 586 524 1377 22 11 6 chr11 34948652 34948830 -115834723 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1013 238 112 35 chr11 34948830 34949282 -115834271 - MLT1K LTR MaLR -64 524 6 2114 98 14 0 chr11 34949282 34949559 -115833994 + AluSc SINE Alu 29 309 0 439 299 22 15 chr11 34949791 34949925 -115833628 - L2 LINE L2 0 3272 3138 2417 71 7 3 chr11 34950070 34950364 -115833189 - AluY SINE Alu -16 295 1 664 240 42 42 chr11 34950418 34950635 -115832918 + L2 LINE L2 3094 3310 -3 307 207 0 0 chr11 34950767 34950825 -115832728 - L2 LINE L2 -2 3311 3254 924 158 61 6 chr11 34950962 34951127 -115832426 + MLT1A2 LTR MaLR 1 174 -200 369 86 0 0 chr11 34951128 34951186 -115832367 + (TC)n Simple_repeat Simple_repeat 1 58 0 267 318 32 61 chr11 34951206 34951486 -115832067 - MLT1K LTR MaLR -158 430 159 201 253 67 0 chr11 34951702 34951777 -115831776 + L2 LINE L2 2983 3062 -210 214 233 50 117 chr11 34951858 34951898 -115831655 - MIR SINE MIR -78 184 143 1344 198 124 58 chr11 34951898 34952332 -115831221 - MLT1C LTR MaLR 0 467 5 214 233 50 117 chr11 34952332 34952411 -115831142 - MIR SINE MIR -119 143 73 2146 127 3 16 chr11 34952601 34952917 -115830636 - AluSx SINE Alu 0 312 1 337 298 107 0 chr11 34953107 34953228 -115830325 - L2 LINE L2 0 3313 3180 1670 199 0 7 chr11 34953424 34953716 -115829837 + AluJo SINE Alu 1 290 -22 434 300 62 19 chr11 34953854 34954014 -115829539 + MIR SINE MIR 25 191 -71 558 228 117 17 chr11 34954066 34954246 -115829307 + MIR SINE MIR 21 218 -44 1743 183 5 37 chr11 34954374 34954752 -115828801 - L1MB3 LINE L1 -1 6182 5817 276 344 45 6 chr11 34955407 34955564 -115827989 + L1ME LINE L1 5704 5866 -255 1578 208 86 36 chr11 34955672 34956148 -115827405 - MLT1D LTR MaLR 0 505 6 240 211 0 0 chr11 34956232 34956284 -115827269 + L2 LINE L2 3262 3313 0 183 156 0 0 chr11 34956824 34956856 -115826697 + (CA)n Simple_repeat Simple_repeat 1 32 0 298 298 11 0 chr11 34956883 34956977 -115826576 - MER117 DNA MER1_type -101 96 2 669 101 0 0 chr11 34957282 34957381 -115826172 + L1PB1 LINE L1 6053 6151 0 2322 105 0 3 chr11 34957399 34957703 -115825850 + AluSq SINE Alu 1 303 -10 333 200 0 0 chr11 34957841 34957906 -115825647 + L2 LINE L2 3005 3069 -244 334 306 130 0 chr11 34957934 34958042 -115825511 + L2 LINE L2 3150 3271 -1 1787 184 0 7 chr11 34958331 34958636 -115824917 - AluSx SINE Alu -9 303 1 295 179 62 116 chr11 34958861 34958934 -115824619 - L2 LINE L2 -33 3280 3213 350 294 48 8 chr11 34958934 34959060 -115824493 - MER94 DNA DNA -1 133 3 295 179 62 116 chr11 34959060 34959098 -115824455 - L2 LINE L2 -100 3213 3175 277 315 90 0 chr11 34959098 34959187 -115824366 - MER91A DNA MER1_type -10 186 90 200 337 10 0 chr11 34959409 34959507 -115824046 - L2 LINE L2 -132 3181 3083 301 220 0 33 chr11 34959598 34959689 -115823864 - L2 LINE L2 -230 3083 2996 190 333 0 14 chr11 34959854 34959926 -115823627 - L2 LINE L2 -57 3215 3145 691 215 20 0 chr11 34959998 34960147 -115823406 + MER103 DNA DNA 13 164 -2 2481 80 0 0 chr11 34960248 34960550 -115823003 + AluY SINE Alu 1 302 -9 198 279 0 15 chr11 34960777 34960845 -115822708 + MIR SINE MIR 99 165 -97 551 212 142 66 chr11 34964338 34964564 -115818989 - MIR SINE MIR 0 262 20 1931 157 7 0 chr11 34965302 34965601 -115817952 + AluSx SINE Alu 1 301 -11 1306 10 10 29 chr11 34965630 34965835 -115817718 + (GAAA)n Simple_repeat Simple_repeat 1 201 0 663 226 36 12 chr11 34966206 34966374 -115817179 + MIR SINE MIR 8 179 -83 229 69 0 0 chr11 34966684 34966713 -115816840 + HsTC2 DNA Tc2 33 61 -1837 771 209 16 16 chr11 34968216 34968398 -115815155 + MIR SINE MIR 80 261 -1 346 350 82 6 chr11 34969323 34969506 -115814047 + MIR SINE MIR 46 242 -20 786 224 34 6 chr11 34969569 34969748 -115813805 + MIR SINE MIR 7 190 -72 738 279 5 0 chr11 34969810 34970007 -115813546 - MIR SINE MIR -60 202 5 2377 92 0 0 chr11 34970536 34970828 -115812725 - AluSg SINE Alu -18 292 1 182 300 0 29 chr11 34971307 34971377 -115812176 - MIR3 SINE MIR -52 156 89 289 303 16 25 chr11 34971798 34971920 -115811633 - MIR SINE MIR -140 122 2 309 225 14 0 chr11 34973154 34973225 -115810328 - MIR3 SINE MIR -39 169 98 204 200 0 0 chr11 34973525 34973565 -115809988 - MIR SINE MIR -115 147 108 699 216 65 43 chr11 34975259 34975490 -115808063 - MER106A DNA MER1_type 0 236 1 2164 110 7 0 chr11 34976755 34977061 -115806492 - AluSx SINE Alu 0 309 2 405 270 7 51 chr11 34977223 34977360 -115806193 + MIR SINE MIR 19 149 -59 538 118 97 0 chr11 34977443 34977536 -115806017 - MER58 DNA MER1_type -1 2419 2318 380 211 9 140 chr11 34977548 34977577 -115805976 - MER58 DNA MER1_type -2321 99 68 2372 106 0 3 chr11 34977577 34977889 -115805664 - AluSx SINE Alu 0 312 2 380 211 9 140 chr11 34977889 34977973 -115805580 - MER58 DNA MER1_type -2352 68 1 549 201 77 48 chr11 34978014 34978223 -115805330 - MER113 DNA MER1_type? -306 215 1 228 289 70 26 chr11 34978709 34978823 -115804730 + MIR SINE MIR 110 228 -34 552 241 94 20 chr11 34978858 34979061 -115804492 - MER46C DNA MER2_type 0 338 121 181 30 91 0 chr11 34979079 34979112 -115804441 + (TATG)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr11 34979272 34979294 -115804259 + AT_rich Low_complexity Low_complexity 1 22 0 1990 110 3 14 chr11 34979306 34979588 -115803965 + AluSx SINE Alu 12 290 -22 2127 168 0 0 chr11 34979601 34979964 -115803589 - L1PA16 LINE L1 0 6166 5804 334 196 54 0 chr11 34980080 34980172 -115803381 + MIR SINE MIR 52 148 -114 210 293 100 53 chr11 34980678 34980828 -115802725 + MIR SINE MIR 72 228 -34 631 235 111 0 chr11 34980856 34981018 -115802535 - MIR SINE MIR -5 257 78 198 322 203 0 chr11 34981088 34981206 -115802347 + MIR SINE MIR 110 251 -11 225 154 0 0 chr11 34981676 34981715 -115801838 + (CA)n Simple_repeat Simple_repeat 2 40 0 585 206 132 74 chr11 34982102 34982342 -115801211 + MIR SINE MIR 8 252 -10 1844 144 35 11 chr11 34982359 34982644 -115800909 + AluJb SINE Alu 1 292 -20 2042 132 0 3 chr11 34982654 34982943 -115800610 + AluJb SINE Alu 4 291 -21 860 160 0 19 chr11 34982948 34983104 -115800449 + L1MB3 LINE L1 6030 6182 -1 202 291 73 0 chr11 34983219 34983274 -115800279 + L3 LINE CR1 1515 1573 -4 186 220 47 27 chr11 34983878 34984018 -115799535 + MIR SINE MIR 63 243 -19 411 289 68 32 chr11 34984932 34985181 -115798372 + MIR SINE MIR 1 258 -4 659 263 24 64 chr11 34986036 34986287 -115797266 - MIR SINE MIR 0 262 22 1755 168 7 13 chr11 34986567 34986865 -115796688 + AluJb SINE Alu 1 296 -16 2246 102 3 3 chr11 34987006 34987301 -115796252 - AluSx SINE Alu -17 295 1 475 256 25 0 chr11 34987843 34987964 -115795589 - MIR SINE MIR -11 251 128 388 275 203 43 chr11 34988259 34988535 -115795018 + MER102b DNA MER1_type 7 326 -15 22 0 0 0 chr11 34990480 34990502 -115793051 + AT_rich Low_complexity Low_complexity 1 22 0 234 267 100 17 chr11 34990968 34991088 -115792465 + MIR SINE MIR 10 139 -69 227 294 69 39 chr11 34991082 34991184 -115792369 + L2 LINE L2 3155 3259 -13 * 458 252 0 9 chr11 34991201 34991312 -115792241 - MIR SINE MIR -36 226 117 393 310 125 16 chr11 34991895 34992079 -115791474 - MIR SINE MIR -53 209 6 292 283 0 47 chr11 34993164 34993270 -115790283 - MIR3 SINE MIR -27 181 81 367 308 52 12 chr11 34993300 34993472 -115790081 + MIR SINE MIR 21 199 -63 225 303 30 61 chr11 34993555 34993687 -115789866 + L3 LINE CR1 1336 1463 -114 2103 120 17 3 chr11 34994236 34994535 -115789018 + AluSq SINE Alu 1 303 -10 423 220 17 51 chr11 34994839 34994957 -115788596 - MER94 DNA DNA -13 121 8 182 319 33 22 chr11 34996713 34996804 -115786749 + MIR3 SINE MIR 85 176 -32 434 293 49 12 chr11 34997548 34997712 -115785841 - MIR SINE MIR -1 261 92 537 333 96 15 chr11 34997798 34998204 -115785349 - L2 LINE L2 -1 3312 2874 617 161 153 0 chr11 34998212 34998349 -115785204 - MER3 DNA MER1_type -6 203 46 442 266 163 18 chr11 34998422 34998704 -115784849 - L2 LINE L2 -440 2874 2552 483 245 176 32 chr11 34999299 34999515 -115784038 - MIR SINE MIR -12 250 4 198 191 0 0 chr11 34999515 34999562 -115783991 + (CA)n Simple_repeat Simple_repeat 2 48 0 487 288 31 0 chr11 35000907 35001067 -115782486 + MIR SINE MIR 92 256 -6 271 361 122 5 chr11 35001253 35001458 -115782095 - L2 LINE L2 -371 2943 2715 1013 89 24 0 chr11 35001574 35001742 -115781811 + (TATAG)n Simple_repeat Simple_repeat 5 176 0 451 163 31 16 chr11 35001759 35001888 -115781665 + (TATAG)n Simple_repeat Simple_repeat 5 135 0 880 126 29 0 chr11 35001901 35002075 -115781478 + (TATAG)n Simple_repeat Simple_repeat 2 180 0 780 171 30 4 chr11 35002087 35002655 -115780898 + (TATAG)n Simple_repeat Simple_repeat 1 583 0 599 283 160 22 chr11 35002668 35003068 -115780485 - L2 LINE L2 -22 3291 2837 313 250 14 0 chr11 35003223 35003295 -115780258 + L2 LINE L2 2632 2704 -610 192 349 0 16 chr11 35003968 35004031 -115779522 + MIR SINE MIR 11 72 -190 570 291 109 5 chr11 35004194 35004404 -115779149 - MIR SINE MIR -26 236 5 2236 101 0 10 chr11 35004789 35005077 -115778476 + AluSx SINE Alu 1 287 -25 216 0 0 0 chr11 35005077 35005101 -115778452 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 878 117 0 8 chr11 35006411 35006539 -115777014 - FLAM_C SINE Alu -4 129 3 573 168 19 0 chr11 35007424 35007531 -115776022 - FLAM_A SINE Alu -10 132 24 567 245 40 0 chr11 35007768 35007919 -115775634 + Charlie8 DNA MER1_type 94 250 -2167 531 167 19 19 chr11 35008390 35008498 -115775055 - MLT1D LTR MaLR 0 467 360 300 154 0 0 chr11 35008528 35008580 -115774973 + A-rich Low_complexity Low_complexity 1 52 0 662 234 149 63 chr11 35008581 35008773 -115774780 - MLT1D LTR MaLR -162 343 112 2089 122 10 7 chr11 35008773 35009068 -115774485 - AluSq SINE Alu -15 298 3 662 234 149 63 chr11 35009068 35009191 -115774362 - MLT1D LTR MaLR -393 112 1 1918 161 0 0 chr11 35009286 35009584 -115773969 + AluJb SINE Alu 1 298 -14 2023 127 3 50 chr11 35009791 35010114 -115773439 + AluSx SINE Alu 1 308 -4 2072 136 0 3 chr11 35010419 35010714 -115772839 - AluSx SINE Alu -18 294 1 3910 139 89 1 chr11 35010823 35011483 -115772070 - LTR62 LTR ERVK -1 718 1 2183 92 7 14 chr11 35011567 35011862 -115771691 - AluSg SINE Alu -17 293 1 2823 141 33 18 chr11 35011891 35012402 -115771151 + L1MB8 LINE L1 5655 6173 -5 212 262 0 0 chr11 35012406 35012448 -115771105 + polypurine Low_complexity Low_complexity 3 44 0 250 212 12 12 chr11 35012448 35012533 -115771020 + GA-rich Low_complexity Low_complexity 3 87 0 394 192 323 0 chr11 35012535 35012634 -115770919 + FLAM_A SINE Alu 1 131 -2 818 113 70 0 chr11 35012717 35012859 -115770694 - L1MB3 LINE L1 0 6183 6032 1981 100 0 0 chr11 35012859 35013109 -115770444 - AluSx SINE Alu -62 250 1 2116 133 0 13 chr11 35013309 35013624 -115769929 - AluJb SINE Alu 0 312 2 195 283 0 0 chr11 35015331 35015377 -115768176 + MIR SINE MIR 65 110 -152 2335 237 117 13 chr11 35015433 35016141 -115767412 + MER21B LTR ERV1 7 788 -75 2186 122 0 0 chr11 35016146 35016440 -115767113 + AluSx SINE Alu 1 294 -18 758 168 8 0 chr11 35017226 35017345 -115766208 - FLAM_A SINE Alu -13 120 1 22 0 0 0 chr11 35017937 35017959 -115765594 + AT_rich Low_complexity Low_complexity 1 22 0 259 220 68 0 chr11 35018502 35018561 -115764992 - L2 LINE L2 -1 3312 3250 258 207 111 99 chr11 35018757 35019110 -115764443 - L1MEd LINE L1 -5078 1041 685 255 311 31 10 chr11 35019120 35019282 -115764271 - L1MDa LINE L1 -5106 1276 1056 2825 19 0 13 chr11 35019302 35019616 -115763937 - AluY SINE Alu -1 310 1 225 340 29 0 chr11 35020240 35020343 -115763210 - L1MDa LINE L1 -5945 427 322 231 305 30 38 chr11 35022466 35022597 -115760956 - MIR3 SINE MIR -49 159 30 1958 114 29 0 chr11 35023394 35023667 -115759886 + AluSx SINE Alu 1 281 -31 204 40 0 0 chr11 35023670 35023695 -115759858 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 378 224 56 0 chr11 35023698 35023823 -115759730 + L1ME4a LINE L1 5990 6121 0 1748 143 29 29 chr11 35025358 35025665 -115757888 + AluJo SINE Alu 3 309 -3 207 328 101 35 chr11 35027864 35028062 -115755491 + L2 LINE L2 2904 3114 -158 2344 79 23 0 chr11 35028606 35028910 -115754643 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr11 35030564 35030587 -115752966 + AT_rich Low_complexity Low_complexity 1 23 0 269 320 47 23 chr11 35031168 35031296 -115752257 - MIR SINE MIR -101 161 31 180 0 0 0 chr11 35032716 35032736 -115750817 + (CAT)n Simple_repeat Simple_repeat 2 21 0 1892 138 4 4 chr11 35033238 35033514 -115750039 - AluJb SINE Alu -10 302 27 191 284 45 15 chr11 35034634 35034701 -115748852 + MIR SINE MIR 190 258 -4 3665 149 65 2 chr11 35035927 35036496 -115747057 + MER6A DNA MER2_type 1 605 0 21 0 0 0 chr11 35037563 35037584 -115745969 + AT_rich Low_complexity Low_complexity 1 21 0 531 238 93 29 chr11 35038158 35038349 -115745204 + MIR SINE MIR 5 210 -52 596 163 131 44 chr11 35038769 35038929 -115744624 - MER5B DNA MER1_type -3 175 2 2191 91 3 10 chr11 35039068 35039364 -115744189 + AluSp SINE Alu 1 294 -19 212 237 97 21 chr11 35040133 35040226 -115743327 - MIR SINE MIR -66 196 97 2338 107 0 19 chr11 35040586 35040904 -115742649 - AluSx SINE Alu 0 312 1 21 0 0 0 chr11 35041132 35041153 -115742400 + AT_rich Low_complexity Low_complexity 1 21 0 2529 133 106 0 chr11 35041692 35042099 -115741454 + LTR47A LTR ERVL 1 450 -2 303 197 74 0 chr11 35042161 35042230 -115741323 + L1ME LINE L1 5606 5679 -483 770 234 106 56 chr11 35043233 35043491 -115740062 + MLT1J1 LTR MaLR 93 372 -74 2322 100 7 0 chr11 35043491 35043791 -115739762 - AluSp SINE Alu -11 302 1 770 234 106 56 chr11 35043791 35043852 -115739701 + MLT1J1 LTR MaLR 372 428 -18 2570 178 54 18 chr11 35043890 35044298 -115739255 + L1ME2 LINE L1 5281 5716 -448 1735 186 3 7 chr11 35044298 35044599 -115738954 - AluJb SINE Alu -12 300 1 2570 178 54 18 chr11 35044599 35044746 -115738807 + L1ME2 LINE L1 5716 5856 -308 254 313 30 22 chr11 35044747 35044881 -115738672 + L1MC4 LINE L1 7899 8033 -9 2292 102 0 0 chr11 35045265 35045560 -115737993 + AluSx SINE Alu 17 311 -1 205 381 62 0 chr11 35045667 35045764 -115737789 + MIR3 SINE MIR 13 115 -93 345 331 131 44 chr11 35046106 35046426 -115737127 + L2 LINE L2 2925 3272 0 249 254 118 64 chr11 35046509 35046619 -115736934 - L2 LINE L2 -1 3271 3156 1125 216 18 0 chr11 35048467 35048685 -115734868 - MIR SINE MIR -13 249 28 2208 112 0 13 chr11 35048988 35049293 -115734260 + AluSx SINE Alu 1 301 -11 25 51 0 0 chr11 35049482 35049521 -115734032 + AT_rich Low_complexity Low_complexity 1 39 0 2197 128 0 0 chr11 35050303 35050615 -115732938 + AluSx SINE Alu 1 312 0 2538 57 0 3 chr11 35050654 35050955 -115732598 - AluY SINE Alu -11 300 1 608 290 119 22 chr11 35051122 35051484 -115732069 - L1ME4a LINE L1 -205 5916 5520 185 337 70 47 chr11 35051619 35051705 -115731848 - L2 LINE L2 -6 3266 3179 545 270 13 33 chr11 35052533 35052685 -115730868 + MIR SINE MIR 6 154 -108 1237 253 47 24 chr11 35052733 35053157 -115730396 - MLT1J LTR MaLR -34 477 1 842 285 16 16 chr11 35053489 35053745 -115729808 - MIR SINE MIR -5 257 2 1884 113 50 3 chr11 35054869 35055151 -115728402 - AluSx SINE Alu -17 295 1 567 271 89 61 chr11 35055565 35055845 -115727708 + L2 LINE L2 3025 3312 -1 185 135 0 27 chr11 35055937 35055974 -115727579 - L3 LINE CR1 -1114 463 428 2314 99 3 0 chr11 35056067 35056361 -115727192 + AluSp SINE Alu 2 296 -17 2421 184 54 68 chr11 35056376 35057023 -115726530 + L1MC4 LINE L1 7405 8042 0 2149 123 0 7 chr11 35057311 35057612 -115725941 + AluSx SINE Alu 1 299 -13 1535 174 3 24 chr11 35057622 35057910 -115725643 + AluJo SINE Alu 11 292 -20 288 0 0 0 chr11 35058474 35058506 -115725047 + (A)n Simple_repeat Simple_repeat 1 32 0 2055 143 0 7 chr11 35059561 35059868 -115723685 + AluJo SINE Alu 1 305 -7 6172 127 28 12 chr11 35060368 35061512 -115722041 - L1MA4A LINE L1 -1 6302 4998 2079 127 3 0 chr11 35061825 35062116 -115721437 - AluSx SINE Alu -3 309 18 771 152 9 0 chr11 35062341 35062453 -115721100 + MER81 DNA DNA 2 114 0 427 227 58 122 chr11 35063029 35063372 -115720181 - L1ME4a LINE L1 -12 6109 5789 2245 114 0 0 chr11 35063906 35064204 -115719349 + AluSx SINE Alu 1 298 -14 26 64 0 0 chr11 35064308 35064355 -115719198 + AT_rich Low_complexity Low_complexity 1 47 0 490 76 0 0 chr11 35065852 35065918 -115717635 + L1PA16 LINE L1 6092 6157 -9 23 0 0 0 chr11 35065918 35065941 -115717612 + AT_rich Low_complexity Low_complexity 1 23 0 294 164 0 0 chr11 35066995 35067050 -115716503 + CT-rich Low_complexity Low_complexity 1 55 0 2373 92 0 3 chr11 35067050 35067355 -115716198 - AluSc SINE Alu -5 304 1 600 302 13 2 chr11 35067362 35067582 -115715971 - L1MC4a LINE L1 -302 5819 5623 225 213 288 12 chr11 35068136 35068216 -115715337 - MIR SINE MIR -67 195 94 743 273 40 114 chr11 35069266 35069404 -115714149 + MLT1K LTR MaLR 168 315 -273 2358 102 0 13 chr11 35069404 35069719 -115713834 + AluSx SINE Alu 1 311 -1 743 273 40 114 chr11 35069719 35070035 -115713518 + MLT1K LTR MaLR 315 588 0 2234 112 3 0 chr11 35071519 35071814 -115711739 + AluSg SINE Alu 1 296 -14 403 259 166 34 chr11 35072208 35072413 -115711140 + L1MEd LINE L1 996 1227 -4892 289 325 38 14 chr11 35072499 35072711 -115710842 + HAL1 LINE L1 1423 1639 -868 1628 135 30 61 chr11 35073386 35073682 -115709871 - AluJb SINE Alu -14 298 12 4388 187 51 31 chr11 35074503 35075349 -115708204 - MER21B LTR ERV1 0 863 1 218 89 44 0 chr11 35075436 35075481 -115708072 + (TTAAA)n Simple_repeat Simple_repeat 4 50 0 2215 111 3 0 chr11 35075494 35075791 -115707762 + AluSx SINE Alu 1 298 -14 201 108 0 0 chr11 35076073 35076110 -115707443 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 279 0 0 0 chr11 35076528 35076559 -115706994 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1377 176 70 37 chr11 35076561 35076834 -115706719 - AluJb SINE Alu -30 282 1 344 243 0 0 chr11 35077443 35077513 -115706040 + LTR33 LTR ERVL 5 74 -447 2627 118 74 7 chr11 35077515 35077946 -115705607 - L1MA8 LINE L1 -1 6290 5831 237 327 148 0 chr11 35079066 35079167 -115704386 - L2 LINE L2 -8 3305 3190 299 298 165 13 chr11 35079225 35079383 -115704170 - MIR3 SINE MIR -24 184 3 482 298 8 27 chr11 35080093 35080384 -115703169 + GA-rich Low_complexity Low_complexity 1 285 0 474 311 3 22 chr11 35080397 35080715 -115702838 + GA-rich Low_complexity Low_complexity 1 311 0 257 334 67 13 chr11 35080766 35080930 -115702623 - MIR SINE MIR -63 145 8 249 327 79 10 chr11 35080974 35081075 -115702478 - MIR SINE MIR -74 188 81 24 67 0 0 chr11 35082112 35082157 -115701396 + AT_rich Low_complexity Low_complexity 1 45 0 1716 180 7 3 chr11 35082591 35082880 -115700673 + AluJo SINE Alu 5 294 -18 449 145 60 12 chr11 35083096 35083179 -115700374 - MER3 DNA MER1_type -122 87 1 1972 125 21 4 chr11 35083260 35083565 -115699988 - AluSx SINE Alu 0 310 1 2434 32 4 4 chr11 35084179 35084495 -115699058 - AluY SINE Alu 0 316 1 2110 105 25 0 chr11 35084651 35084964 -115698589 + AluSx SINE Alu 1 320 0 3205 123 8 29 chr11 35085039 35085088 -115698465 - Tigger1 DNA MER2_type -789 1629 1580 2118 139 0 0 chr11 35085088 35085390 -115698163 - AluSx SINE Alu -10 302 1 3205 123 8 29 chr11 35085390 35085850 -115697703 - Tigger1 DNA MER2_type -838 1580 1131 1080 300 68 62 chr11 35085848 35086315 -115697238 + MER115 DNA AcHobo 224 693 0 * 2179 78 4 4 chr11 35086915 35087226 -115696327 - AluY SINE Alu 0 311 1 378 271 25 17 chr11 35087310 35087414 -115696139 + MIR SINE MIR 21 128 -134 1574 167 3 65 chr11 35087414 35087737 -115695816 - AluJo SINE Alu -9 303 1 378 271 25 17 chr11 35087737 35087750 -115695803 + MIR SINE MIR 128 139 -123 261 273 101 30 chr11 35088149 35088248 -115695305 + MIR SINE MIR 154 259 -3 210 213 50 12 chr11 35088249 35088329 -115695224 + (TA)n Simple_repeat Simple_repeat 1 83 0 21 0 0 0 chr11 35088450 35088471 -115695082 + AT_rich Low_complexity Low_complexity 1 21 0 333 296 105 40 chr11 35088632 35088879 -115694674 - MLT1K LTR MaLR 0 588 326 191 212 0 0 chr11 35089175 35089208 -115694345 + MIR SINE MIR 82 114 -94 2116 131 3 3 chr11 35089262 35089574 -115693979 + AluSx SINE Alu 1 312 0 1945 150 3 0 chr11 35090142 35090436 -115693117 - AluSx SINE Alu -17 295 1 15713 191 13 15 chr11 35090500 35097098 -115686455 + L1PB1 LINE L1 6 6866 -1 416 222 17 26 chr11 35097226 35097343 -115686210 + MIR SINE MIR 121 236 -26 642 336 72 43 chr11 35097483 35097902 -115685651 + MLT1K LTR MaLR 49 479 -109 1027 262 45 47 chr11 35098054 35098608 -115684945 + L1ME3A LINE L1 3873 4425 -1721 55 43 0 11 chr11 35098648 35098664 -115684889 + AT_rich Low_complexity Low_complexity 1 16 -77 2072 109 3 55 chr11 35098664 35098976 -115684577 + AluSx SINE Alu 1 296 -16 55 43 0 11 chr11 35098976 35099053 -115684500 + AT_rich Low_complexity Low_complexity 16 93 0 761 269 35 29 chr11 35099142 35099488 -115684065 + L1ME3A LINE L1 4612 4959 -1187 * 957 243 93 82 chr11 35099468 35099592 -115683961 + L1ME3A LINE L1 5354 5475 -695 3863 53 0 24 chr11 35099592 35100059 -115683494 + L1PA5 LINE L1 5695 6150 -4 957 243 93 82 chr11 35100059 35100152 -115683401 + L1ME3A LINE L1 5475 5566 -604 2430 50 3 26 chr11 35100152 35100455 -115683098 + AluY SINE Alu 1 296 -15 957 243 93 82 chr11 35100455 35100845 -115682708 + L1ME3A LINE L1 5566 5937 -233 828 221 14 60 chr11 35101033 35101175 -115682378 + MER3 DNA MER1_type 3 133 -76 2415 85 0 0 chr11 35101175 35101469 -115682084 + AluSx SINE Alu 1 294 -18 828 221 14 60 chr11 35101469 35101543 -115682010 + MER3 DNA MER1_type 133 209 0 229 241 0 19 chr11 35101552 35101606 -115681947 - LTR33 LTR ERVL 0 521 469 858 282 110 36 chr11 35101648 35102095 -115681458 - LTR33 LTR ERVL -41 480 1 405 150 30 10 chr11 35102175 35102275 -115681278 + GA-rich Low_complexity Low_complexity 3 104 0 2411 62 3 0 chr11 35102459 35102751 -115680802 - AluY SINE Alu -16 295 3 273 123 158 0 chr11 35103367 35103433 -115680120 - MLT1J2 LTR MaLR -312 138 72 261 125 25 0 chr11 35103408 35103448 -115680105 - LTR67 LTR ERVL -418 139 99 * 660 203 167 36 chr11 35104065 35104287 -115679266 + MIR SINE MIR 6 256 -6 749 319 125 16 chr11 35104369 35104711 -115678842 - L1ME4a LINE L1 0 6121 5705 233 29 29 0 chr11 35104711 35104745 -115678808 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 749 319 125 16 chr11 35104745 35104907 -115678646 - L1ME4a LINE L1 -416 5705 5562 220 336 127 15 chr11 35105256 35105390 -115678163 - L2 LINE L2 -2 3270 3122 512 277 163 26 chr11 35105527 35105707 -115677846 - L1ME4a LINE L1 0 6121 5967 1827 127 94 0 chr11 35105707 35105983 -115677570 + AluSx SINE Alu 1 302 -10 512 277 163 26 chr11 35105983 35106231 -115677322 - L1ME4a LINE L1 -154 5967 5634 333 320 58 82 chr11 35106380 35106795 -115676758 + L1M2a LINE L1 4 408 -6760 454 228 22 0 chr11 35106798 35106890 -115676663 + L1M2a LINE L1 1888 1981 -5187 1378 136 14 9 chr11 35106891 35107111 -115676442 - Tigger1 DNA MER2_type -4 2414 2194 * 7130 130 11 37 chr11 35107109 35107168 -115676385 - Tigger1 DNA MER2_type -982 1436 1377 2163 124 3 0 chr11 35107168 35107467 -115676086 + AluSp SINE Alu 1 300 -13 7130 130 11 37 chr11 35107467 35108277 -115675276 - Tigger1 DNA MER2_type -1041 1377 602 2203 117 7 0 chr11 35108277 35108575 -115674978 + AluSx SINE Alu 6 305 -7 7130 130 11 37 chr11 35108575 35108869 -115674684 - Tigger1 DNA MER2_type -1816 602 302 1272 132 11 0 chr11 35108869 35109058 -115674495 + AluSx SINE Alu 9 199 -113 1317 236 4 0 chr11 35109065 35109341 -115674212 + L1M2a LINE L1 2715 2991 -4177 1628 61 37 9 chr11 35109346 35109560 -115673993 - Tigger1 DNA MER2_type -1157 1261 1042 4813 220 59 56 chr11 35109562 35109676 -115673877 + L1M1 LINE L1 3069 3181 -4384 1875 180 0 0 chr11 35109676 35109971 -115673582 + AluSx SINE Alu 1 295 -17 4813 220 59 56 chr11 35109971 35110509 -115673044 + L1M1 LINE L1 3181 3716 -3849 317 24 24 0 chr11 35110509 35110551 -115673002 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 4813 220 59 56 chr11 35110551 35111727 -115671826 + L1M1 LINE L1 3716 4989 -2576 3255 33 3 3 chr11 35111752 35112120 -115671433 + L1PA7 LINE L1 5783 6150 -4 298 47 47 47 chr11 35112123 35112209 -115671344 + (TAAAAA)n Simple_repeat Simple_repeat 3 88 0 592 177 26 0 chr11 35112238 35112351 -115671202 + L1MC3 LINE L1 7670 7785 0 2068 124 3 16 chr11 35112448 35112762 -115670791 - AluSx SINE Alu -2 310 1 2491 80 3 0 chr11 35113046 35113357 -115670196 - AluSp SINE Alu -1 312 1 2337 77 0 22 chr11 35113380 35113693 -115669860 + AluY SINE Alu 1 306 -5 2199 130 0 0 chr11 35113946 35114246 -115669307 + AluSx SINE Alu 1 300 -12 368 318 63 67 chr11 35115102 35115357 -115668196 - L2 LINE L2 0 3272 3019 1995 140 7 0 chr11 35115380 35115680 -115667873 + AluSx SINE Alu 1 302 -10 2188 82 3 31 chr11 35115791 35116107 -115667446 + AluSp SINE Alu 1 308 0 8556 176 18 6 chr11 35116227 35118224 -115665329 - L1PB1 LINE L1 -546 5605 3581 4043 89 9 2 chr11 35118224 35118751 -115664802 + L1PB1 LINE L1 5616 6146 -5 2502 93 0 0 chr11 35118754 35119065 -115664488 - AluSx SINE Alu -1 311 1 234 0 0 0 chr11 35119289 35119315 -115664238 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 241 338 27 61 chr11 35119572 35119609 -115663944 + MER5B DNA MER1_type 4 41 -137 1745 166 10 14 chr11 35119609 35119905 -115663648 - AluJo SINE Alu -17 295 1 241 338 27 61 chr11 35119905 35120015 -115663538 + MER5B DNA MER1_type 41 146 -32 1807 125 3 56 chr11 35120248 35120542 -115663011 + AluSx SINE Alu 1 280 -32 369 0 0 0 chr11 35120542 35120583 -115662970 + (CA)n Simple_repeat Simple_repeat 2 42 0 580 92 13 0 chr11 35120720 35120796 -115662757 + MADE1 DNA Mariner 1 77 -3 1735 61 0 0 chr11 35120800 35121013 -115662540 - AluY SINE Alu -8 303 91 202 136 0 91 chr11 35121241 35121285 -115662268 - L3b LINE CR1 -356 1227 1188 267 103 0 0 chr11 35121460 35121499 -115662054 + (T)n Simple_repeat Simple_repeat 1 39 0 2491 87 3 0 chr11 35122757 35123068 -115660485 + AluSp SINE Alu 1 312 -1 990 174 28 47 chr11 35123530 35123592 -115659961 - MER3 DNA MER1_type 0 209 147 1532 161 8 4 chr11 35123592 35123835 -115659718 + AluJb SINE Alu 44 287 -25 990 174 28 47 chr11 35123835 35123985 -115659568 - MER3 DNA MER1_type -62 147 1 1994 144 7 0 chr11 35124133 35124418 -115659135 + AluSx SINE Alu 1 287 -25 613 211 19 32 chr11 35124610 35124766 -115658787 - L2 LINE L2 0 3313 3160 396 0 0 0 chr11 35125542 35125586 -115657967 + (TA)n Simple_repeat Simple_repeat 2 45 0 985 211 53 51 chr11 35125830 35126185 -115657368 - L1MC5 LINE L1 -228 7733 7378 196 122 61 0 chr11 35127846 35127895 -115655658 + C-rich Low_complexity Low_complexity 3 54 0 755 230 64 39 chr11 35130557 35130761 -115652792 - MIR SINE MIR -21 241 33 206 143 0 24 chr11 35131595 35131637 -115651916 + (CCCCCA)n Simple_repeat Simple_repeat 5 45 0 859 121 0 71 chr11 35131637 35131777 -115651776 - FLAM_C SINE Alu -13 130 1 212 245 0 19 chr11 35132708 35132761 -115650792 + CT-rich Low_complexity Low_complexity 1 52 0 180 333 29 14 chr11 35132951 35133020 -115650533 + MIR SINE MIR 7 76 -186 2006 151 3 22 chr11 35133020 35133338 -115650215 - AluJo SINE Alu 0 312 1 640 236 86 6 chr11 35133343 35133517 -115650036 + MIR SINE MIR 62 249 -13 554 284 118 31 chr11 35133522 35133776 -115649777 - L2 LINE L2 -4 3309 3034 248 356 176 19 chr11 35134246 35134451 -115649102 + L2 LINE L2 3030 3266 -6 316 310 116 8 chr11 35135947 35136076 -115647477 + MIR SINE MIR 2 144 -118 330 248 77 34 chr11 35136143 35136260 -115647293 + MIR SINE MIR 9 130 -132 434 206 12 2 chr11 35136271 35136430 -115647123 - MER20 DNA MER1_type -17 202 3 365 293 20 0 chr11 35136433 35136532 -115647021 + MIR SINE MIR 132 232 -30 201 364 68 0 chr11 35137351 35137439 -115646114 - MIR SINE MIR -52 210 117 282 272 65 0 chr11 35137593 35137685 -115645868 - L2 LINE L2 -343 2970 2873 2239 138 0 0 chr11 35138646 35138958 -115644595 - AluSx SINE Alu 0 312 1 375 297 63 0 chr11 35139346 35139457 -115644096 + MIR3 SINE MIR 85 202 -6 409 198 49 12 chr11 35140634 35140715 -115642838 - L2 LINE L2 -1 3312 3229 829 210 349 40 chr11 35140794 35141275 -115642278 - L2 LINE L2 -338 2976 2347 1868 164 0 17 chr11 35141314 35141612 -115641941 + AluJb SINE Alu 1 293 -19 290 247 21 10 chr11 35142177 35142274 -115641279 + MIR SINE MIR 81 178 -84 424 302 53 41 chr11 35142276 35142338 -115641215 - MER5B DNA MER1_type 0 178 118 2091 126 3 0 chr11 35142338 35142631 -115640922 + AluSx SINE Alu 1 294 -18 186 118 0 0 chr11 35142631 35142665 -115640888 + (TG)n Simple_repeat Simple_repeat 2 35 0 424 302 53 41 chr11 35142665 35142770 -115640783 - MER5B DNA MER1_type -59 119 8 1135 118 0 0 chr11 35142974 35143194 -115640359 + AluSg/x SINE Alu 133 352 0 536 256 108 8 chr11 35143235 35143393 -115640160 - MIR SINE MIR -63 145 10 391 291 171 11 chr11 35143449 35143624 -115639929 - MIR SINE MIR -18 244 42 965 176 31 10 chr11 35144430 35144623 -115638930 - MER3 DNA MER1_type 0 209 13 531 279 58 32 chr11 35144822 35145012 -115638541 + MIR SINE MIR 63 257 -5 575 304 22 16 chr11 35145601 35145785 -115637768 + MIR SINE MIR 51 235 -27 222 208 0 38 chr11 35145988 35146041 -115637512 + CT-rich Low_complexity Low_complexity 3 53 0 216 0 0 0 chr11 35146044 35146068 -115637485 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 626 208 8 0 chr11 35146876 35147001 -115636552 + FLAM_C SINE Alu 3 128 -15 194 315 54 22 chr11 35147001 35147093 -115636460 + MIR SINE MIR 163 257 -5 211 339 16 0 chr11 35147330 35147392 -115636161 + MER5A DNA MER1_type 71 133 -56 1948 134 16 36 chr11 35147392 35147697 -115635856 - AluSx SINE Alu -13 299 1 2242 135 0 0 chr11 35147709 35148013 -115635540 - AluSx SINE Alu -8 304 1 752 291 8 30 chr11 35148347 35148581 -115634972 - MIR SINE MIR -13 249 21 749 267 100 17 chr11 35149037 35149277 -115634276 + MIR SINE MIR 2 261 -1 1668 194 0 7 chr11 35149439 35149722 -115633831 - AluJo SINE Alu 0 312 32 309 292 117 32 chr11 35149724 35149878 -115633675 + MIR SINE MIR 60 226 -36 2169 128 6 13 chr11 35152325 35152638 -115630915 - AluSx SINE Alu -1 311 1 200 83 0 28 chr11 35152669 35152705 -115630848 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 598 251 36 26 chr11 35152747 35152942 -115630611 - L1ME3 LINE L1 -39 6123 5927 330 324 81 14 chr11 35152948 35153096 -115630457 + MIR SINE MIR 92 249 -13 329 328 152 37 chr11 35153897 35154141 -115629412 - L2 LINE L2 -13 3259 2988 634 300 19 20 chr11 35155623 35155857 -115627696 - MIR SINE MIR -1 261 30 240 293 131 0 chr11 35155923 35156022 -115627531 - MIR SINE MIR -77 131 20 435 287 87 68 chr11 35156276 35156597 -115626956 - MLT1K LTR MaLR -69 519 193 665 301 31 27 chr11 35157525 35157781 -115625772 - MIR SINE MIR 0 262 6 874 235 43 55 chr11 35158792 35159016 -115624537 - L1MDa LINE L1 -3745 2795 2570 2127 123 7 23 chr11 35159016 35159324 -115624229 - AluSx SINE Alu -9 303 1 874 235 43 55 chr11 35159324 35159466 -115624087 - L1MDa LINE L1 -3970 2570 2428 1980 157 0 23 chr11 35159466 35159771 -115623782 - AluSx SINE Alu -14 298 1 874 235 43 55 chr11 35159771 35159959 -115623594 - L1MDa LINE L1 -4112 2428 2238 2036 142 7 0 chr11 35160087 35160443 -115623110 - AluSx SINE Alu 0 312 1 730 242 96 15 chr11 35160525 35160723 -115622830 - MIR SINE MIR 0 262 49 640 165 0 10 chr11 35161013 35161110 -115622443 + AluJb SINE Alu 3 98 -214 213 340 96 13 chr11 35161140 35161296 -115622257 - MIR3 SINE MIR -23 185 17 273 190 35 17 chr11 35161842 35161900 -115621653 + MIR SINE MIR 149 207 -55 2258 118 13 0 chr11 35161901 35162205 -115621348 + AluSq SINE Alu 1 308 -5 434 295 199 25 chr11 35162297 35162663 -115620890 - L2 LINE L2 -1 3312 2883 422 221 83 39 chr11 35162694 35162898 -115620655 - L1MC5 LINE L1 -44 7917 7705 2345 92 10 0 chr11 35162905 35163200 -115620353 + AluSx SINE Alu 1 298 -14 1035 167 5 42 chr11 35163221 35163413 -115620140 + AluJb SINE Alu 89 273 -39 321 315 132 49 chr11 35163440 35163484 -115620069 - L1MC5 LINE L1 -233 7809 7770 1828 145 14 0 chr11 35163484 35163790 -115619763 - AluSx SINE Alu 0 312 26 321 315 132 49 chr11 35163790 35163909 -115619644 - L1MC5 LINE L1 -272 7770 7526 1001 273 126 23 chr11 35164089 35164612 -115618941 + MLT1L LTR MaLR 39 615 0 2517 81 3 0 chr11 35164904 35165211 -115618342 - AluSp SINE Alu -5 308 1 195 313 0 38 chr11 35165959 35166039 -115617514 - MIR SINE MIR 0 262 186 604 88 12 0 chr11 35166064 35166144 -115617409 + AluS SINE Alu 2 82 -231 2096 119 4 0 chr11 35166144 35166422 -115617131 + AluSx SINE Alu 1 279 -33 212 0 0 35 chr11 35166422 35166451 -115617102 + (TAAAA)n Simple_repeat Simple_repeat 5 32 0 321 214 104 59 chr11 35166461 35166587 -115616966 - MIR SINE MIR -63 145 13 342 351 13 26 chr11 35167521 35167672 -115615881 + MIR3 SINE MIR 44 192 -16 1301 181 26 79 chr11 35167674 35167842 -115615711 + L1PA16 LINE L1 5823 5965 -201 1955 142 0 24 chr11 35167842 35168137 -115615416 + AluSx SINE Alu 1 288 -24 1301 181 26 79 chr11 35168137 35168310 -115615243 + L1PA16 LINE L1 5965 6146 -20 1636 197 42 3 chr11 35168332 35168621 -115614932 - AluJb SINE Alu -12 300 1 194 359 113 9 chr11 35170122 35170228 -115613325 + L3 LINE CR1 1445 1561 -16 987 195 17 0 chr11 35171222 35171396 -115612157 + MER45A DNA AcHobo 1 177 -1 279 335 45 17 chr11 35171442 35171618 -115611935 + MIR SINE MIR 64 244 -18 432 232 32 48 chr11 35171653 35171778 -115611775 - L2 LINE L2 -1 3312 3190 328 229 168 46 chr11 35172285 35172416 -115611137 - MIR SINE MIR 0 262 116 350 242 63 42 chr11 35173121 35173216 -115610337 + MIR SINE MIR 19 115 -147 933 215 0 0 chr11 35173232 35173404 -115610149 + AluJb SINE Alu 122 293 -19 2454 96 0 0 chr11 35173941 35174253 -115609300 - AluSx SINE Alu 0 312 1 200 211 0 0 chr11 35175886 35175924 -115607629 - L2 LINE L2 -1063 2251 2214 1344 174 204 18 chr11 35176115 35176551 -115607002 - MER69 DNA AcHobo 0 2526 2010 * 1557 247 141 10 chr11 35176549 35177051 -115606502 - MER69 DNA AcHobo -1958 568 1 2335 109 10 3 chr11 35177213 35177524 -115606029 - AluSq SINE Alu 0 313 1 758 231 23 17 chr11 35177882 35178055 -115605498 - MIR SINE MIR 0 262 89 2501 65 3 0 chr11 35178116 35178410 -115605143 + AluSg SINE Alu 1 295 -15 264 59 0 0 chr11 35179095 35179129 -115604424 + (T)n Simple_repeat Simple_repeat 1 34 0 1066 144 0 17 chr11 35179355 35179535 -115604018 - FRAM SINE Alu 0 176 1 2251 101 3 0 chr11 35179567 35179875 -115603678 + AluSx SINE Alu 3 311 -1 527 212 257 12 chr11 35180172 35180413 -115603140 + L1MC4 LINE L1 7741 8040 -2 366 271 75 0 chr11 35181289 35181396 -115602157 + MIR SINE MIR 14 128 -134 189 147 0 0 chr11 35181396 35181430 -115602123 + (TCCCC)n Simple_repeat Simple_repeat 3 36 0 645 179 9 0 chr11 35181466 35181572 -115601981 - AluJb SINE Alu -204 108 2 405 241 107 0 chr11 35181572 35181684 -115601869 + MIR SINE MIR 111 234 -28 767 176 0 8 chr11 35181702 35181833 -115601720 + FLAM_C SINE Alu 2 131 -2 490 206 43 0 chr11 35181857 35181949 -115601604 - Tigger7 DNA MER2_type -10 2481 2386 * 1189 188 5 5 chr11 35181948 35182156 -115601397 - Tigger7 DNA MER2_type -497 236 29 2258 105 0 0 chr11 35182169 35182475 -115601078 + AluSx SINE Alu 1 306 -6 656 247 133 46 chr11 35183788 35184112 -115599441 + L1ME4a LINE L1 5759 6110 -11 1617 172 3 14 chr11 35184113 35184410 -115599143 - AluJb SINE Alu -18 294 1 727 260 34 15 chr11 35186088 35186292 -115597261 - MIR SINE MIR -20 242 35 1854 144 3 0 chr11 35187350 35187635 -115595918 + AluSx SINE Alu 1 286 -26 36 62 0 0 chr11 35187635 35187699 -115595854 + AT_rich Low_complexity Low_complexity 1 64 0 248 235 86 37 chr11 35187874 35187955 -115595598 + MIR SINE MIR 34 118 -90 1173 179 40 134 chr11 35187955 35188317 -115595236 - MLT1A1 LTR MaLR 0 365 43 2017 95 91 0 chr11 35188317 35188602 -115594951 - AluSp SINE Alu -2 311 1 1173 179 40 134 chr11 35188602 35188642 -115594911 - MLT1A1 LTR MaLR -322 43 1 262 276 69 11 chr11 35188896 35188983 -115594570 - L2 LINE L2 -6 3307 3216 1599 284 181 18 chr11 35189195 35189958 -115593595 + L2 LINE L2 328 1214 -2100 914 200 0 0 chr11 35189958 35190128 -115593425 - FRAM SINE Alu -8 168 1 1669 182 16 13 chr11 35190176 35190489 -115593064 + MLT1A1 LTR MaLR 52 365 0 991 297 137 41 chr11 35190492 35190909 -115592644 + L2 LINE L2 1222 1728 -1586 1574 159 9 60 chr11 35190909 35191098 -115592455 - AluJo SINE Alu -12 300 132 2053 92 14 14 chr11 35191098 35191393 -115592160 + AluSg SINE Alu 1 295 -15 1574 159 9 60 chr11 35191393 35191518 -115592035 - AluJo SINE Alu -180 132 2 991 297 137 41 chr11 35191518 35191763 -115591790 + L2 LINE L2 1728 1948 -1366 1360 178 68 14 chr11 35191765 35192046 -115591507 - AluJb SINE Alu -2 300 5 478 168 20 10 chr11 35192067 35192168 -115591385 - L1MC4 LINE L1 -2 8040 7939 1582 106 0 5 chr11 35192168 35192385 -115591168 + AluSg/x SINE Alu 81 296 -14 1105 279 181 29 chr11 35192485 35193596 -115589957 + L2 LINE L2 1959 3312 -1 32 0 0 0 chr11 35194277 35194309 -115589244 + AT_rich Low_complexity Low_complexity 1 32 0 2266 95 0 0 chr11 35194316 35194620 -115588933 + AluSq SINE Alu 1 304 -9 816 153 0 14 chr11 35195408 35195552 -115588001 - FLAM_C SINE Alu 0 143 2 670 258 101 15 chr11 35196528 35196726 -115586827 + MIR SINE MIR 26 240 -22 22 0 0 0 chr11 35197968 35197990 -115585563 + AT_rich Low_complexity Low_complexity 1 22 0 182 330 68 10 chr11 35198262 35198365 -115585188 - L2 LINE L2 -171 3142 3034 1278 168 134 0 chr11 35198560 35198822 -115584731 - AluSx SINE Alu -15 297 1 1048 205 30 76 chr11 35198854 35198911 -115584642 - L1ME1 LINE L1 -17 6149 6091 916 115 0 43 chr11 35198911 35199050 -115584503 - FLAM_C SINE Alu 0 133 1 1048 205 30 76 chr11 35199050 35199294 -115584259 - L1ME1 LINE L1 -75 6091 5862 2213 102 0 0 chr11 35199519 35199823 -115583730 + AluSx SINE Alu 1 304 -8 918 178 0 61 chr11 35199851 35200065 -115583488 - AluJo SINE Alu -92 220 20 32 26 0 0 chr11 35201362 35201401 -115582152 + AT_rich Low_complexity Low_complexity 1 39 0 566 200 173 13 chr11 35201962 35202112 -115581441 + MER5A DNA MER1_type 9 182 -7 2116 125 0 0 chr11 35202596 35202891 -115580662 + AluSx SINE Alu 1 295 -17 2281 65 0 32 chr11 35202894 35203202 -115580351 + AluY SINE Alu 1 298 -13 2152 117 0 16 chr11 35203280 35203597 -115579956 + AluSx SINE Alu 1 312 0 226 287 30 30 chr11 35203655 35203822 -115579731 - L1ME4a LINE L1 -178 5943 5777 1148 172 22 37 chr11 35203827 35204137 -115579416 + MLT1A1 LTR MaLR 5 365 0 620 232 70 81 chr11 35205217 35205476 -115578077 + MIR SINE MIR 7 262 0 577 244 62 12 chr11 35205881 35206041 -115577512 + MIR SINE MIR 48 215 -47 1906 126 61 3 chr11 35206041 35206334 -115577219 + AluSx SINE Alu 1 310 -2 495 233 120 13 chr11 35206551 35206701 -115576852 + MIR SINE MIR 23 188 -74 763 150 8 24 chr11 35206713 35206840 -115576713 + FLAM_C SINE Alu 3 127 -16 587 253 7 7 chr11 35207655 35207801 -115575752 - MER103 DNA DNA -1 165 20 27 62 0 0 chr11 35207893 35207941 -115575612 + AT_rich Low_complexity Low_complexity 1 48 0 2169 110 7 0 chr11 35208009 35208317 -115575236 + AluSq SINE Alu 1 310 -3 1891 111 55 0 chr11 35208321 35208610 -115574943 - AluSx SINE Alu -7 305 1 1990 130 0 0 chr11 35208910 35209195 -115574358 + AluSx SINE Alu 1 285 -27 180 0 0 0 chr11 35211531 35211551 -115572002 + (TG)n Simple_repeat Simple_repeat 2 21 0 439 283 91 32 chr11 35211696 35211915 -115571638 + MIR SINE MIR 3 234 -28 2867 6 0 0 chr11 35211923 35212241 -115571312 - AluYb8 SINE Alu 0 318 1 32 26 0 0 chr11 35212980 35213019 -115570534 + AT_rich Low_complexity Low_complexity 1 39 0 948 280 25 0 chr11 35213019 35213262 -115570291 - MIR SINE MIR 0 262 14 2464 69 0 0 chr11 35213380 35213686 -115569867 - AluY SINE Alu -5 306 1 470 242 0 87 chr11 35213701 35213850 -115569703 + L1MD2 LINE L1 6210 6345 -14 679 232 12 18 chr11 35213867 35214031 -115569522 - MIR SINE MIR -4 258 96 441 0 0 0 chr11 35214328 35214377 -115569176 + (TATG)n Simple_repeat Simple_repeat 2 50 0 1778 148 22 0 chr11 35214377 35214655 -115568898 - AluJo SINE Alu -28 284 1 342 161 18 0 chr11 35215320 35215376 -115568177 + Charlie8 DNA MER1_type 196 252 -2165 2267 98 0 0 chr11 35215472 35215777 -115567776 + AluSx SINE Alu 1 305 -7 342 277 151 24 chr11 35216084 35216250 -115567303 + MIR SINE MIR 35 221 -41 1245 247 102 0 chr11 35216329 35216633 -115566920 + MER58B DNA MER1_type 1 335 -6 1137 194 47 114 chr11 35217093 35217496 -115566057 + MLT1B LTR MaLR 9 384 -6 399 298 70 0 chr11 35217550 35217664 -115565889 - MIR SINE MIR -107 155 34 1610 148 0 43 chr11 35217868 35218172 -115565381 + AluJb SINE Alu 1 291 -21 373 277 78 43 chr11 35219618 35219727 -115563826 - MIR3 SINE MIR -12 196 79 1785 179 0 6 chr11 35219727 35220040 -115563513 + AluJo SINE Alu 1 311 -1 373 277 78 43 chr11 35220040 35220071 -115563482 - MIR3 SINE MIR -129 79 51 2212 97 0 0 chr11 35220126 35220425 -115563128 - AluSq SINE Alu -14 299 1 2313 94 10 0 chr11 35220425 35220733 -115562820 - AluSp SINE Alu -1 312 1 216 367 28 0 chr11 35221034 35221143 -115562410 - MIR SINE MIR -67 141 30 190 167 0 0 chr11 35221827 35221863 -115561690 - MIR SINE MIR -63 145 110 258 291 136 10 chr11 35223673 35223776 -115559777 + MIR SINE MIR 31 146 -116 1336 143 0 5 chr11 35224989 35225192 -115558361 - AluSg/x SINE Alu -30 280 79 467 256 43 55 chr11 35225269 35225433 -115558120 + MIR3 SINE MIR 9 170 -38 1704 165 14 14 chr11 35226003 35226288 -115557265 + AluJb SINE Alu 1 285 -27 210 254 0 18 chr11 35226981 35227036 -115556517 + (CAA)n Simple_repeat Simple_repeat 1 54 0 2138 95 37 0 chr11 35227211 35227506 -115556047 + AluSq SINE Alu 1 306 -7 425 292 167 0 chr11 35227513 35227657 -115555896 - MIR SINE MIR -12 250 83 1731 151 3 36 chr11 35228213 35228517 -115555036 + AluJo SINE Alu 1 294 -18 597 239 9 0 chr11 35228522 35228631 -115554922 - MER3 DNA MER1_type -86 123 14 1929 121 3 78 chr11 35230295 35230617 -115552936 + AluSx SINE Alu 1 298 -14 215 192 137 14 chr11 35230958 35231031 -115552522 + MIR SINE MIR 110 191 -71 619 193 90 14 chr11 35231079 35231147 -115552406 - MER3 DNA MER1_type -4 205 144 2182 109 31 7 chr11 35231147 35231441 -115552112 + AluSx SINE Alu 1 301 -11 619 193 90 14 chr11 35231441 35231517 -115552036 - MER3 DNA MER1_type -65 144 50 1962 141 20 20 chr11 35231564 35231862 -115551691 + AluJb SINE Alu 1 298 -14 428 252 39 0 chr11 35231937 35232040 -115551513 + MIR SINE MIR 138 244 -18 2333 105 0 0 chr11 35232420 35232716 -115550837 - AluSg SINE Alu -14 296 1 754 241 73 17 chr11 35235089 35235321 -115548232 + MIR SINE MIR 3 247 -15 234 344 0 0 chr11 35235696 35235760 -115547793 - L2 LINE L2 -5 3308 3245 904 168 52 0 chr11 35236303 35236458 -115547095 + FRAM SINE Alu 1 160 -16 2317 89 7 0 chr11 35236961 35237263 -115546290 - AluSp SINE Alu -9 304 1 210 37 0 0 chr11 35237660 35237687 -115545866 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1405 181 72 11 chr11 35237727 35237992 -115545561 + AluJo SINE Alu 1 281 -31 207 0 0 0 chr11 35237992 35238015 -115545538 + (T)n Simple_repeat Simple_repeat 1 23 0 413 251 12 123 chr11 35238215 35238386 -115545167 + MIR SINE MIR 108 259 -3 2148 107 30 6 chr11 35238472 35238809 -115544744 - MER47A DNA MER2_type 0 366 22 2536 93 3 0 chr11 35238965 35239277 -115544276 + AluSp SINE Alu 1 313 0 2587 81 3 0 chr11 35239484 35239792 -115543761 - AluSp SINE Alu -4 309 1 560 280 42 73 chr11 35240990 35241080 -115542473 - MIR SINE MIR 0 262 171 1851 141 0 18 chr11 35241080 35241363 -115542190 - AluJb SINE Alu -11 301 24 560 280 42 73 chr11 35241363 35241533 -115542020 - MIR SINE MIR -91 171 10 204 291 47 12 chr11 35242398 35242484 -115541069 - MIR SINE MIR -43 219 131 1092 108 7 0 chr11 35242676 35242824 -115540729 + AluSg/x SINE Alu 135 283 -27 353 303 97 19 chr11 35243205 35243360 -115540193 + MIR SINE MIR 77 243 -19 742 147 0 9 chr11 35244385 35244501 -115539052 - FLAM_C SINE Alu -17 116 2 598 246 80 27 chr11 35244850 35245037 -115538516 - MIR SINE MIR -64 198 2 2235 96 3 10 chr11 35245217 35245508 -115538045 + AluSx SINE Alu 1 289 -23 1712 131 65 24 chr11 35246483 35246774 -115536779 + AluJo SINE Alu 1 303 -9 242 326 0 0 chr11 35246988 35247037 -115536516 - L2 LINE L2 -90 3182 3134 2245 117 0 0 chr11 35247059 35247357 -115536196 + AluY SINE Alu 1 298 -13 263 287 176 9 chr11 35247379 35247487 -115536066 + MIR SINE MIR 18 143 -65 1178 249 163 15 chr11 35247589 35247999 -115535554 - L2 LINE L2 -5 3308 2838 25 0 0 0 chr11 35248015 35248040 -115535513 + AT_rich Low_complexity Low_complexity 1 25 0 693 93 19 0 chr11 35248040 35248148 -115535405 - L1MA3 LINE L1 -2 6303 6194 2183 83 17 24 chr11 35248198 35248486 -115535067 - AluSq SINE Alu -14 299 14 1117 125 18 0 chr11 35248670 35248838 -115534715 + AluSg/x SINE Alu 137 307 -5 489 204 23 68 chr11 35248909 35249041 -115534512 - MIR SINE MIR -56 206 81 470 236 164 0 chr11 35250644 35250784 -115532769 - MIR SINE MIR -14 248 86 180 175 62 150 chr11 35250858 35250938 -115532615 - L2 LINE L2 -85 3228 3156 2317 70 0 14 chr11 35250951 35251261 -115532292 + AluY SINE Alu 1 306 0 24 0 0 0 chr11 35252336 35252360 -115531193 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr11 35252412 35252458 -115531095 + AT_rich Low_complexity Low_complexity 1 46 0 1704 139 19 85 chr11 35252462 35252778 -115530775 + AluJo SINE Alu 1 295 -17 479 178 0 0 chr11 35252778 35252851 -115530702 + AluJ/FRAM SINE Alu 219 291 -21 1476 145 104 48 chr11 35253146 35253415 -115530138 - AluJb SINE Alu -24 288 5 2237 110 0 3 chr11 35253645 35253944 -115529609 - AluSx SINE Alu -13 299 2 3561 170 144 48 chr11 35253947 35254346 -115529207 - L1MC3 LINE L1 -25 7760 7401 1507 118 0 5 chr11 35254346 35254550 -115529003 + AluSg/x SINE Alu 105 307 -3 3561 170 144 48 chr11 35254550 35255102 -115528451 - L1MC3 LINE L1 -384 7401 6718 934 155 0 0 chr11 35255102 35255244 -115528309 + FLAM_C SINE Alu 2 143 0 252 209 0 0 chr11 35255244 35255287 -115528266 - L1MC4 LINE L1 -1259 6783 6741 188 261 169 56 chr11 35255602 35255744 -115527809 - MIR SINE MIR -12 250 93 328 229 38 17 chr11 35256284 35256415 -115527138 + L1ME4a LINE L1 1206 6103 -8 2576 62 3 0 chr11 35256606 35256911 -115526642 - AluY SINE Alu -5 306 1 2266 115 3 3 chr11 35256962 35257274 -115526279 - AluSx SINE Alu 0 312 1 3487 147 42 52 chr11 35257276 35257435 -115526118 + L1MB7 LINE L1 5438 5597 -587 1921 112 29 60 chr11 35257435 35257749 -115525804 + AluSq SINE Alu 1 304 -9 2185 109 0 59 chr11 35257752 35258074 -115525479 + AluSx SINE Alu 1 303 -9 2416 103 0 3 chr11 35258077 35258389 -115525164 + AluSx SINE Alu 1 311 -1 3487 147 42 52 chr11 35258389 35258808 -115524745 + L1MB7 LINE L1 5601 6022 -162 1793 121 0 0 chr11 35258808 35259048 -115524505 - AluSg/x SINE Alu 0 310 71 1833 141 43 0 chr11 35259048 35259324 -115524229 - AluSx SINE Alu -19 293 5 3487 147 42 52 chr11 35259324 35259468 -115524085 + L1MB7 LINE L1 6020 6163 -21 200 152 0 0 chr11 35259548 35259581 -115523972 + MIR SINE MIR 81 113 -149 2036 120 16 19 chr11 35259881 35260190 -115523363 - AluSx SINE Alu -4 308 1 2452 90 3 0 chr11 35260328 35260638 -115522915 - AluSp SINE Alu -2 311 1 235 234 43 117 chr11 35261127 35261221 -115522332 - L2 LINE L2 -17 3296 3210 358 325 62 12 chr11 35261346 35261506 -115522047 - MIR SINE MIR -18 244 77 619 217 23 8 chr11 35261686 35261802 -115521751 + AluJo SINE Alu 18 138 -174 1418 172 93 11 chr11 35261802 35262081 -115521472 + AluJo SINE Alu 1 302 -10 619 217 23 8 chr11 35262081 35262093 -115521460 + AluJo SINE Alu 138 148 -164 2220 106 91 25 chr11 35263636 35264033 -115519520 + MER4B LTR ERV1 1 423 -187 2199 128 0 22 chr11 35264036 35264355 -115519198 - AluSx SINE Alu 0 312 1 2257 157 16 21 chr11 35264666 35264841 -115518712 + MLT1B LTR MaLR 3 177 -213 2227 103 0 10 chr11 35264841 35265142 -115518411 + AluSg SINE Alu 1 298 -12 2257 157 16 21 chr11 35265142 35265354 -115518199 + MLT1B LTR MaLR 177 388 -2 185 0 40 0 chr11 35265367 35265392 -115518161 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 360 259 63 118 chr11 35265401 35265748 -115517805 - MLT1L LTR MaLR -88 527 200 1518 141 18 128 chr11 35266245 35266541 -115517012 - MER7A DNA MER2_type -2692 346 104 1796 180 33 0 chr11 35266541 35266841 -115516712 - AluJo SINE Alu -2 310 1 1518 141 18 128 chr11 35266841 35266934 -115516619 - MER7A DNA MER2_type -2934 104 2 298 305 211 23 chr11 35266981 35267109 -115516444 + L2 LINE L2 3121 3272 0 3180 163 13 42 chr11 35267135 35267239 -115516314 + L1MC1 LINE L1 4788 4893 -1440 2433 85 13 0 chr11 35267239 35267544 -115516009 - AluSp SINE Alu -4 309 1 3180 163 13 42 chr11 35267544 35268351 -115515202 + L1MC1 LINE L1 4893 5664 -669 2222 128 0 0 chr11 35268351 35268655 -115514898 + AluSx SINE Alu 2 305 -7 3180 163 13 42 chr11 35268655 35268816 -115514737 + L1MC1 LINE L1 5664 5828 -505 2570 170 6 31 chr11 35268818 35269295 -115514258 - MER66B LTR ERV1 0 486 22 1233 93 23 56 chr11 35269295 35269333 -115514220 + L1MC1 LINE L1 5829 5867 -466 2398 107 0 3 chr11 35269333 35269643 -115513910 - AluSq SINE Alu -4 309 1 1233 93 23 56 chr11 35269643 35269819 -115513734 + L1MC1 LINE L1 5867 6036 -297 494 295 66 94 chr11 35269819 35270107 -115513446 + L2 LINE L2 2993 3272 0 757 263 38 14 chr11 35270326 35270535 -115513018 - MIR SINE MIR -13 249 36 995 190 0 0 chr11 35271404 35271578 -115511975 + AluJb SINE Alu 134 307 -5 369 0 0 0 chr11 35271934 35271975 -115511578 + (TG)n Simple_repeat Simple_repeat 2 42 0 2325 86 0 10 chr11 35272616 35272919 -115510634 - AluSx SINE Alu -12 300 1 572 292 12 12 chr11 35273498 35273666 -115509887 + MIR SINE MIR 23 190 -72 2269 118 0 0 chr11 35273758 35274055 -115509498 + AluSx SINE Alu 1 297 -15 2088 89 29 58 chr11 35274190 35274503 -115509050 - AluSx SINE Alu -8 304 1 1681 203 3 7 chr11 35274705 35275005 -115508548 + AluJb SINE Alu 1 299 -13 24 0 0 0 chr11 35275154 35275178 -115508375 + AT_rich Low_complexity Low_complexity 1 24 0 242 281 49 0 chr11 35275844 35275926 -115507627 - MIR3 SINE MIR -7 201 116 266 217 0 29 chr11 35276199 35276268 -115507285 + C-rich Low_complexity Low_complexity 3 69 0 565 126 0 37 chr11 35276692 35276827 -115506726 + (CCCCCA)n Simple_repeat Simple_repeat 3 132 0 1984 128 21 7 chr11 35277022 35277310 -115506243 - AluSx SINE Alu -20 292 1 434 256 111 45 chr11 35277427 35277716 -115505837 - L2 LINE L2 -650 2664 2357 181 325 97 0 chr11 35278209 35278323 -115505230 + L3b LINE CR1 1265 1389 -194 584 216 153 35 chr11 35278615 35278814 -115504739 + MIR SINE MIR 42 262 0 485 273 100 68 chr11 35279819 35279970 -115503583 + MIR SINE MIR 10 155 -107 217 0 0 0 chr11 35279970 35279994 -115503559 + (TTTTG)n Simple_repeat Simple_repeat 2 135 0 1873 109 20 76 chr11 35279994 35280296 -115503257 - AluSq SINE Alu -1 308 1 485 273 100 68 chr11 35280296 35280363 -115503190 + MIR SINE MIR 154 236 -26 839 234 39 22 chr11 35280364 35280595 -115502958 - MIR SINE MIR 0 262 28 277 323 77 8 chr11 35281189 35281319 -115502234 + L2 LINE L2 3134 3272 0 561 253 50 45 chr11 35281989 35282210 -115501343 + MER102a DNA MER1_type 104 325 -5 258 256 24 24 chr11 35282702 35282784 -115500769 - MIR SINE MIR -96 112 31 436 274 153 26 chr11 35283022 35283212 -115500341 - MIR SINE MIR -10 252 39 1053 260 121 43 chr11 35283392 35283511 -115500042 + L2 LINE L2 2569 2677 -636 1960 132 7 0 chr11 35283511 35283815 -115499738 - AluSx SINE Alu 0 306 1 1053 260 121 43 chr11 35283815 35284365 -115499188 + L2 LINE L2 2677 3278 -35 866 261 118 0 chr11 35285245 35285532 -115498021 - MER5C DNA MER1_type 0 324 4 391 377 78 0 chr11 35285538 35285705 -115497848 + MIR SINE MIR 12 191 -71 514 259 58 0 chr11 35286526 35286665 -115496888 - MIR SINE MIR -16 246 100 487 254 8 8 chr11 35286834 35286956 -115496597 + MER5B DNA MER1_type 3 124 -54 302 253 48 0 chr11 35287253 35287336 -115496217 - L2 LINE L2 0 3272 3186 1956 133 3 19 chr11 35287915 35288232 -115495321 - AluSx SINE Alu 0 312 1 305 306 149 0 chr11 35288236 35288357 -115495196 + MIR SINE MIR 117 255 -7 181 30 91 0 chr11 35289104 35289137 -115494416 + (ACTG)n Simple_repeat Simple_repeat 3 38 0 243 270 14 14 chr11 35289699 35289773 -115493780 + MER91A DNA MER1_type 1 74 -122 2331 74 0 3 chr11 35289808 35290104 -115493449 - AluY SINE Alu -16 295 1 23 0 0 0 chr11 35290164 35290187 -115493366 + AT_rich Low_complexity Low_complexity 1 23 0 561 281 54 0 chr11 35290579 35290746 -115492807 - MIR SINE MIR -13 249 74 243 233 67 17 chr11 35292643 35292703 -115490850 + MIR SINE MIR 108 170 -92 275 314 186 14 chr11 35292776 35292916 -115490637 - MIR SINE MIR -98 164 1 1740 170 0 7 chr11 35294093 35294382 -115489171 - AluJb SINE Alu -22 290 4 990 147 13 0 chr11 35295112 35295262 -115488291 - FRAM SINE Alu -15 161 10 552 238 125 0 chr11 35295339 35295507 -115488046 + MIR SINE MIR 65 253 -9 284 236 0 16 chr11 35295636 35295763 -115487790 + (CTA)n Simple_repeat Simple_repeat 1 125 0 658 187 23 202 chr11 35296011 35296157 -115487396 + MIR SINE MIR 27 109 -153 2006 125 0 4 chr11 35296157 35296438 -115487115 - AluSx SINE Alu -32 280 1 658 187 23 202 chr11 35296438 35296548 -115487005 + MIR SINE MIR 109 237 -25 1694 182 3 0 chr11 35296783 35297074 -115486479 - AluJb SINE Alu -19 293 2 200 0 100 0 chr11 35297093 35297123 -115486430 + T-rich Low_complexity Low_complexity 2 34 0 761 82 0 0 chr11 35297123 35297220 -115486333 - HY3 scRNA scRNA -3 98 2 360 345 81 0 chr11 35297341 35297489 -115486064 + MIR SINE MIR 51 210 -52 319 301 153 29 chr11 35297931 35298140 -115485413 + L2 LINE L2 3078 3312 -1 434 320 51 15 chr11 35298147 35298344 -115485209 + MIR SINE MIR 4 207 -55 207 182 0 23 chr11 35298509 35298553 -115485000 + CT-rich Low_complexity Low_complexity 4 46 0 1720 152 35 3 chr11 35298619 35298909 -115484644 + AluJo SINE Alu 14 312 0 305 300 66 2 chr11 35299257 35299389 -115484164 - MIR SINE MIR -68 140 46 1809 171 41 3 chr11 35300420 35300736 -115482817 - L1MA6 LINE L1 -2 6298 5971 438 273 87 12 chr11 35300776 35300937 -115482616 + MIR SINE MIR 77 249 -13 656 142 213 89 chr11 35302286 35302455 -115481098 + AluJb SINE Alu 87 276 -36 233 29 29 0 chr11 35302460 35302494 -115481059 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 285 310 135 15 chr11 35302625 35302825 -115480728 - L2 LINE L2 -49 3264 3041 384 254 37 67 chr11 35302892 35302993 -115480560 - MER94 DNA DNA 0 134 36 1806 159 3 3 chr11 35302993 35303289 -115480264 + AluJb SINE Alu 1 296 -16 384 254 37 67 chr11 35303289 35303321 -115480232 - MER94 DNA DNA -98 36 5 869 295 34 0 chr11 35303403 35303637 -115479916 + MIR SINE MIR 18 259 -3 246 32 0 0 chr11 35305125 35305156 -115478397 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2016 122 7 3 chr11 35305191 35305487 -115478066 + AluSc SINE Alu 1 297 -12 360 225 78 39 chr11 35305623 35305752 -115477801 + MIR SINE MIR 17 150 -58 740 298 57 16 chr11 35306370 35306618 -115476935 - MIR SINE MIR 0 262 5 220 256 61 24 chr11 35306720 35306802 -115476751 - MIR SINE MIR -81 127 43 1009 214 57 0 chr11 35306992 35307221 -115476332 + Charlie1 DNA MER1_type 1 242 -2519 635 125 7 49 chr11 35307205 35307293 -115476260 + Charlie1 DNA MER1_type 2623 2704 -57 * 2050 136 0 16 chr11 35307293 35307601 -115475952 - AluSx SINE Alu -9 303 1 635 125 7 49 chr11 35307601 35307656 -115475897 + Charlie1 DNA MER1_type 2704 2760 -1 1175 150 10 5 chr11 35308529 35308722 -115474831 + AluJb SINE Alu 1 194 -118 225 200 0 0 chr11 35308966 35309006 -115474547 - MLT1J LTR MaLR -377 134 95 979 164 0 0 chr11 35309730 35309901 -115473652 - FRAM SINE Alu -6 170 1 284 339 70 74 chr11 35309901 35310085 -115473468 - L2 LINE L2 -10 3262 3079 2268 116 0 0 chr11 35310085 35310395 -115473158 - AluSg SINE Alu 0 310 1 284 339 70 74 chr11 35310395 35310656 -115472897 - L2 LINE L2 -193 3079 2819 2070 129 70 0 chr11 35310805 35311146 -115472407 + MER47A DNA MER2_type 1 365 -1 2289 66 33 3 chr11 35312038 35312340 -115471213 - AluY SINE Alu 0 311 1 190 298 85 32 chr11 35312451 35312545 -115471008 - MIR SINE MIR -44 218 120 639 315 43 21 chr11 35313579 35313814 -115469739 - MIR SINE MIR -5 257 18 402 21 0 0 chr11 35313908 35313955 -115469598 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 225 0 0 0 chr11 35313975 35314000 -115469553 + (TA)n Simple_repeat Simple_repeat 1 25 0 2250 108 3 0 chr11 35314000 35314307 -115469246 - AluSx SINE Alu -4 308 1 189 0 0 0 chr11 35314789 35314810 -115468743 + (CTTA)n Simple_repeat Simple_repeat 1 21 0 1946 124 4 0 chr11 35314822 35315096 -115468457 - AluSx SINE Alu -28 284 10 338 260 78 13 chr11 35315856 35316010 -115467543 - L2 LINE L2 -91 3222 3059 968 227 61 12 chr11 35316056 35316303 -115467250 - MIR SINE MIR -3 259 1 464 260 197 45 chr11 35316806 35317029 -115466524 + MIR SINE MIR 6 262 0 376 205 86 51 chr11 35317726 35317843 -115465710 + MIR3 SINE MIR 43 163 -45 584 276 52 26 chr11 35317989 35318181 -115465372 - MIR SINE MIR -43 219 23 267 263 105 0 chr11 35319811 35319887 -115463666 + L2 LINE L2 3145 3228 -44 351 297 75 16 chr11 35320523 35320694 -115462859 - MIR3 SINE MIR -31 177 1 256 250 0 0 chr11 35321894 35321954 -115461599 - MIR SINE MIR -116 92 33 353 298 117 29 chr11 35323152 35323323 -115460230 - MIR SINE MIR -13 249 64 288 267 17 28 chr11 35325548 35325776 -115457777 + (CA)n Simple_repeat Simple_repeat 1 225 0 347 229 73 28 chr11 35327402 35327511 -115456042 + MER5A DNA MER1_type 6 119 -70 2344 68 10 0 chr11 35327969 35328264 -115455289 - AluY SINE Alu -13 298 1 735 236 70 15 chr11 35328290 35328489 -115455064 - MIR SINE MIR -6 256 47 290 302 47 0 chr11 35328515 35328644 -115454909 - L2 LINE L2 -630 2684 2550 429 144 115 22 chr11 35329425 35329564 -115453989 - Charlie5 DNA MER1_type -45 2567 2416 2299 83 3 3 chr11 35329573 35329873 -115453680 + AluSp SINE Alu 1 300 -13 264 291 32 16 chr11 35331275 35331378 -115452175 + MIR SINE MIR 79 140 -68 254 253 48 24 chr11 35332340 35332423 -115451130 + MIR SINE MIR 28 112 -150 330 293 118 60 chr11 35332451 35332753 -115450800 + L2 LINE L2 2365 2705 -609 1425 166 123 0 chr11 35332753 35333006 -115450547 + AluJb SINE Alu 1 284 -28 330 293 118 60 chr11 35333006 35333170 -115450383 + L2 LINE L2 2705 2858 -456 262 339 40 40 chr11 35333458 35333582 -115449971 - L2 LINE L2 -9 3263 3140 992 161 19 0 chr11 35336046 35336201 -115447352 + FRAM SINE Alu 1 155 -21 183 246 231 0 chr11 35337954 35338019 -115445534 - MIR SINE MIR -163 99 20 1527 176 35 18 chr11 35338080 35338364 -115445189 + AluJo SINE Alu 1 289 -23 585 246 113 20 chr11 35338462 35338657 -115444896 - MIR SINE MIR -22 240 28 205 291 101 13 chr11 35338719 35338798 -115444755 + MIR3 SINE MIR 123 208 0 21 0 0 0 chr11 35338859 35338880 -115444673 + AT_rich Low_complexity Low_complexity 1 21 0 319 281 99 16 chr11 35340438 35340559 -115442994 - L2 LINE L2 -8 3264 3134 1545 197 94 31 chr11 35341735 35342106 -115441447 + Charlie1b DNA MER1_type 5 416 -2345 931 87 7 43 chr11 35342106 35342244 -115441309 - FLAM_C SINE Alu 0 133 1 1545 197 94 31 chr11 35342244 35342360 -115441193 + Charlie1b DNA MER1_type 416 523 0 394 306 71 38 chr11 35342370 35342553 -115441000 + MIR SINE MIR 3 191 -71 369 0 0 0 chr11 35344945 35344986 -115438567 + (TG)n Simple_repeat Simple_repeat 1 41 0 234 0 0 0 chr11 35345049 35345075 -115438478 + (TG)n Simple_repeat Simple_repeat 1 26 0 243 313 98 25 chr11 35345623 35345786 -115437767 + MIR SINE MIR 73 247 -15 216 236 0 18 chr11 35346394 35346449 -115437104 + (TA)n Simple_repeat Simple_repeat 1 54 0 1381 227 145 93 chr11 35347993 35349121 -115434432 + L2 LINE L2 1327 2513 -801 2278 121 0 0 chr11 35350015 35350312 -115433241 + AluSx SINE Alu 1 297 -15 1526 133 0 0 chr11 35350418 35350628 -115432925 - AluJb SINE Alu -13 299 90 995 201 12 0 chr11 35350793 35350962 -115432591 - MER5A DNA MER1_type 0 189 19 2314 64 0 40 chr11 35352230 35352527 -115431026 - AluY SINE Alu -26 285 1 393 248 41 0 chr11 35352673 35352794 -115430759 + L1ME4a LINE L1 5692 5817 -345 2476 91 3 0 chr11 35354414 35354723 -115428830 + AluSg SINE Alu 1 310 0 324 264 182 6 chr11 35355753 35355912 -115427641 + MIR SINE MIR 2 188 -74 2691 202 47 27 chr11 35356438 35356489 -115427064 + L1MB8 LINE L1 5148 5197 -1137 2380 109 0 3 chr11 35356489 35356800 -115426753 + AluSx SINE Alu 1 310 -2 2691 202 47 27 chr11 35356800 35357732 -115425821 + L1MB8 LINE L1 5197 6332 -2 334 319 22 44 chr11 35357939 35358015 -115425538 + L1ME4a LINE L1 5963 6036 -85 2418 94 7 0 chr11 35358015 35358323 -115425230 - AluSg SINE Alu 0 310 1 334 319 22 44 chr11 35358323 35358381 -115425172 + L1ME4a LINE L1 6036 6094 -27 29 28 0 0 chr11 35358384 35358420 -115425133 + AT_rich Low_complexity Low_complexity 1 36 0 589 244 86 19 chr11 35359077 35359308 -115424245 + MIR SINE MIR 10 256 -6 460 279 91 27 chr11 35359588 35359907 -115423646 + L1ME LINE L1 5311 5649 -513 2100 110 0 56 chr11 35360396 35360715 -115422838 - AluSx SINE Alu -11 301 1 2353 63 28 0 chr11 35362222 35362508 -115421045 - AluSp SINE Alu -19 294 1 497 261 15 31 chr11 35363093 35363223 -115420330 + MIR SINE MIR 16 143 -65 1444 238 106 75 chr11 35364090 35364204 -115419349 + L2 LINE L2 2170 2279 -1034 2395 101 0 0 chr11 35364204 35364502 -115419051 - AluSq SINE Alu -15 298 1 1444 238 106 75 chr11 35364502 35364513 -115419040 + L2 LINE L2 2279 2288 -1025 2571 82 0 0 chr11 35364513 35364817 -115418736 - AluSc SINE Alu -5 304 1 1444 238 106 75 chr11 35364817 35365767 -115417786 + L2 LINE L2 2288 3271 -42 371 258 64 71 chr11 35366177 35366255 -115417298 + L1MC/D LINE L1 5296 5373 -2435 218 32 32 0 chr11 35366255 35366286 -115417267 + (CAA)n Simple_repeat Simple_repeat 1 32 0 371 258 64 71 chr11 35366286 35366474 -115417079 + L1MC/D LINE L1 5373 5560 -2248 249 303 117 14 chr11 35366484 35366629 -115416924 + L1MC/D LINE L1 5602 5761 -2047 859 238 0 0 chr11 35367490 35367658 -115415895 + FRAM SINE Alu 2 169 -7 1046 178 23 32 chr11 35368893 35369112 -115414441 - MER20 DNA MER1_type -2 217 1 342 237 148 22 chr11 35369190 35369325 -115414228 + MER103 DNA DNA 8 159 -7 2181 115 3 13 chr11 35369370 35369503 -115414050 + AluSx SINE Alu 4 137 -175 2180 142 0 0 chr11 35369503 35369813 -115413740 + AluSx SINE Alu 1 310 -2 2181 115 3 13 chr11 35369813 35369991 -115413562 + AluSx SINE Alu 137 312 0 250 272 88 59 chr11 35370228 35370364 -115413189 - MIR3 SINE MIR -63 145 6 441 255 270 19 chr11 35370809 35371072 -115412481 - L2 LINE L2 0 3313 2985 1130 272 81 44 chr11 35371112 35371217 -115412336 - L2 LINE L2 0 3313 3213 2241 98 0 11 chr11 35371217 35371527 -115412026 - AluSx SINE Alu 0 307 1 1130 272 81 44 chr11 35371527 35371876 -115411677 - L2 LINE L2 -100 3213 2841 723 123 51 51 chr11 35372737 35372875 -115410678 - FLAM_C SINE Alu -4 139 2 201 74 0 0 chr11 35373584 35373611 -115409942 + (CA)n Simple_repeat Simple_repeat 2 28 0 188 277 99 20 chr11 35374502 35374603 -115408950 + MIR3 SINE MIR 3 111 -97 223 333 11 0 chr11 35375045 35375132 -115408421 + MIR3 SINE MIR 104 191 -17 23 0 0 0 chr11 35375655 35375678 -115407875 + AT_rich Low_complexity Low_complexity 1 23 0 285 98 0 0 chr11 35375812 35375853 -115407700 + (A)n Simple_repeat Simple_repeat 1 41 0 459 294 89 28 chr11 35377667 35377847 -115405706 - MIR3 SINE MIR -7 201 11 1114 105 0 2 chr11 35378511 35378750 -115404803 - AluSc SINE Alu -18 291 2 305 134 171 37 chr11 35378858 35378940 -115404613 + L1ME4a LINE L1 5966 6058 -63 1853 109 94 7 chr11 35379090 35379366 -115404187 + AluSx SINE Alu 2 301 -11 718 283 271 29 chr11 35381617 35382432 -115401121 - L2 LINE L2 -178 3135 2050 2427 91 3 0 chr11 35382632 35382941 -115400612 - AluSg SINE Alu 0 310 1 275 363 87 60 chr11 35383122 35383422 -115400131 + L2 LINE L2 2960 3267 -5 25 0 0 0 chr11 35385251 35385276 -115398277 + AT_rich Low_complexity Low_complexity 1 25 0 785 94 24 39 chr11 35387334 35387461 -115396092 - L2 LINE L2 0 3313 3189 1692 169 26 13 chr11 35391202 35391316 -115392237 + AluJb SINE Alu 1 112 -200 189 0 0 0 chr11 35391316 35391337 -115392216 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1692 169 26 13 chr11 35391337 35391530 -115392023 + AluJb SINE Alu 112 312 0 1490 153 57 43 chr11 35391587 35391869 -115391684 - AluJo SINE Alu -26 286 1 517 83 0 0 chr11 35392042 35392114 -115391439 + AluSx SINE Alu 1 72 -241 437 89 0 156 chr11 35392119 35392209 -115391344 + AluSp/q SINE Alu 175 250 -63 356 234 0 0 chr11 35392247 35392324 -115391229 - FRAM/FAM SINE Alu -87 79 3 317 176 0 71 chr11 35392325 35392410 -115391143 + L1MA8 LINE L1 6212 6290 -1 240 317 20 30 chr11 35392434 35392535 -115391018 - L2 LINE L2 -312 3001 2902 888 112 83 65 chr11 35392537 35392706 -115390847 + AluSx SINE Alu 72 243 -67 572 174 39 65 chr11 35393053 35393208 -115390345 + FRAM SINE Alu 20 170 -6 1382 183 7 60 chr11 35393226 35393527 -115390026 + AluJo SINE Alu 1 285 -27 1933 144 0 10 chr11 35393737 35394036 -115389517 + AluSx SINE Alu 3 298 -14 2129 132 0 0 chr11 35394808 35395104 -115388449 + AluSx SINE Alu 1 296 -16 265 189 200 0 chr11 35395208 35395303 -115388250 - L1M4 LINE L1 -3115 3031 2918 22 35 0 0 chr11 35396546 35396575 -115386978 + AT_rich Low_complexity Low_complexity 1 29 0 727 180 0 43 chr11 35396771 35396910 -115386643 - FLAM_C SINE Alu 0 133 1 350 114 0 127 chr11 35397088 35397167 -115386386 - Alu SINE Alu 0 302 234 495 227 0 0 chr11 35447172 35447391 -115336162 + (CA)n Simple_repeat Simple_repeat 1 219 0 410 228 0 6 chr11 35447406 35447586 -115335967 + (CA)n Simple_repeat Simple_repeat 2 180 0 204 214 54 0 chr11 35447635 35447691 -115335862 + CT-rich Low_complexity Low_complexity 3 61 0 357 228 54 11 chr11 35447700 35447792 -115335761 + MER112 DNA MER1_type 163 258 -2 2147 119 3 10 chr11 35448202 35448514 -115335039 + AluSx SINE Alu 1 310 -2 2368 74 10 3 chr11 35448687 35448985 -115334568 + AluSx SINE Alu 1 300 -12 2273 95 7 3 chr11 35449523 35449827 -115333726 + AluSc SINE Alu 3 307 -2 2325 34 0 0 chr11 35451031 35451296 -115332257 - AluY SINE Alu -1 310 46 2117 108 7 23 chr11 35451301 35451606 -115331947 - AluSx SINE Alu -12 300 1 240 167 19 0 chr11 35452430 35452484 -115331069 + LTR66 LTR ERVL 385 439 -171 1685 111 0 53 chr11 35452667 35452929 -115330624 + AluSx SINE Alu 57 304 -8 210 300 0 44 chr11 35454038 35454128 -115329425 - MIR3 SINE MIR -15 193 108 474 276 55 40 chr11 35454140 35454343 -115329210 + MIR SINE MIR 3 203 -59 255 321 45 15 chr11 35454667 35454801 -115328752 - L2 LINE L2 -241 3031 2894 281 291 48 56 chr11 35454813 35455064 -115328489 - L2 LINE L2 -1275 2039 1791 370 293 66 18 chr11 35455250 35455417 -115328136 + MER5B DNA MER1_type 3 177 -1 702 256 93 0 chr11 35456763 35456935 -115326618 - MIR SINE MIR -72 190 3 401 257 43 14 chr11 35457074 35457214 -115326339 - MER103 DNA DNA -19 147 4 969 185 6 0 chr11 35457250 35457412 -115326141 + FRAM SINE Alu 1 163 -13 647 303 76 58 chr11 35458260 35458767 -115324786 - L1ME4a LINE L1 -260 5861 5361 220 290 32 0 chr11 35459175 35459237 -115324316 - L2 LINE L2 -1 3312 3249 650 78 0 206 chr11 35459754 35459895 -115323658 - AluSp/q SINE Alu -5 308 197 477 184 0 0 chr11 35459916 35459992 -115323561 + AluJb SINE Alu 205 280 -32 192 77 0 0 chr11 35459995 35460021 -115323532 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1349 142 5 0 chr11 35460462 35460666 -115322887 - MER2 DNA MER2_type -135 210 6 1203 181 10 5 chr11 35460957 35461161 -115322392 + MER3 DNA MER1_type 5 209 0 704 264 7 0 chr11 35461301 35461456 -115322097 + MER112 DNA MER1_type 96 251 -9 659 222 103 118 chr11 35461525 35461734 -115321819 + L2 LINE L2 2922 3124 -189 2106 127 10 3 chr11 35461734 35462034 -115321519 - AluSx SINE Alu -8 304 3 659 222 103 118 chr11 35462034 35462221 -115321332 + L2 LINE L2 3124 3312 -1 1960 194 20 45 chr11 35462447 35462843 -115320710 - MER70A LTR ERVL 0 472 87 1638 139 94 45 chr11 35462843 35463130 -115320423 - AluSx SINE Alu -11 301 1 2186 114 7 3 chr11 35463521 35463811 -115319742 + AluSx SINE Alu 1 291 -21 489 34 0 0 chr11 35463815 35463874 -115319679 + (CATA)n Simple_repeat Simple_repeat 2 60 0 1886 166 23 0 chr11 35464182 35464484 -115319069 - AluJb SINE Alu -3 309 1 546 148 0 0 chr11 35465428 35465509 -115318044 - AluJ/FLAM SINE Alu -230 82 2 182 337 54 11 chr11 35465546 35465638 -115317915 - L3b LINE CR1 -369 1214 1119 324 102 0 0 chr11 35465916 35465965 -115317588 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 2427 136 95 3 chr11 35466223 35466613 -115316940 - MSTB LTR MaLR 0 426 1 194 0 39 0 chr11 35467124 35467150 -115316403 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 453 312 35 69 chr11 35467565 35467796 -115315757 - L2 LINE L2 -62 3210 2988 1526 94 80 0 chr11 35467997 35468210 -115315343 + MER30 DNA MER1_type 1 230 0 535 301 235 26 chr11 35468329 35469217 -115314336 - L2 LINE L2 -657 2657 1584 957 298 69 16 chr11 35469373 35469736 -115313817 - L2 LINE L2 -12 3301 2920 262 347 131 41 chr11 35469980 35470468 -115313085 + L2 LINE L2 2694 3231 -41 2182 110 0 16 chr11 35470789 35471106 -115312447 - AluSx SINE Alu 0 312 1 2362 100 0 0 chr11 35471123 35471422 -115312131 - AluSg SINE Alu -11 299 1 2379 77 0 0 chr11 35471697 35471982 -115311571 - AluSc SINE Alu -24 285 1 368 214 76 35 chr11 35473057 35473202 -115310351 - MIR SINE MIR -109 153 3 1798 145 26 23 chr11 35473522 35473825 -115309728 - AluJb SINE Alu -8 304 1 2142 129 0 10 chr11 35475267 35475577 -115307976 + AluSx SINE Alu 1 307 -5 2063 82 42 49 chr11 35475989 35476295 -115307258 - AluSp SINE Alu -9 304 1 259 372 115 0 chr11 35476532 35476680 -115306873 + MIR3 SINE MIR 37 201 -7 387 0 0 0 chr11 35476697 35476740 -115306813 + (TG)n Simple_repeat Simple_repeat 2 44 0 1977 142 3 0 chr11 35476741 35477029 -115306524 - AluSx SINE Alu -23 289 1 430 221 155 61 chr11 35477485 35477666 -115305887 - L1MC4 LINE L1 -15 8027 7830 21 36 0 0 chr11 35478533 35478561 -115304992 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 35479445 35479468 -115304085 + AT_rich Low_complexity Low_complexity 1 23 0 1644 164 38 7 chr11 35480357 35480644 -115302909 + AluJo SINE Alu 1 296 -16 1788 160 0 7 chr11 35482891 35483196 -115300357 - AluJb SINE Alu 0 308 6 1862 136 14 7 chr11 35483235 35483515 -115300038 - AluSx SINE Alu -30 282 1 1793 151 0 25 chr11 35483840 35484124 -115299429 + AluJo SINE Alu 6 282 -30 209 105 0 26 chr11 35484126 35484164 -115299389 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 231 253 25 0 chr11 35484341 35484420 -115299133 + (TA)n Simple_repeat Simple_repeat 2 82 0 350 284 151 46 chr11 35486052 35486270 -115297283 + MIR SINE MIR 20 260 -2 212 263 13 26 chr11 35486270 35486346 -115297207 + (TAG)n Simple_repeat Simple_repeat 3 77 0 29 60 0 0 chr11 35489377 35489427 -115294126 + AT_rich Low_complexity Low_complexity 1 50 0 426 320 47 0 chr11 35490668 35490818 -115292735 - MIR SINE MIR -59 203 47 1413 216 129 23 chr11 35491206 35491633 -115291920 - L1ME3A LINE L1 -249 5921 5450 197 194 0 0 chr11 35491867 35491898 -115291655 + L2 LINE L2 3214 3244 -28 590 281 257 16 chr11 35491906 35492492 -115291061 - L2 LINE L2 -6 3307 2594 996 224 29 0 chr11 35492526 35492772 -115290781 - L1ME3A LINE L1 -918 5228 4976 243 278 67 93 chr11 35493189 35493332 -115290221 - L1MC4 LINE L1 0 8042 7897 2208 102 3 0 chr11 35493332 35493617 -115289936 - AluSx SINE Alu -26 286 1 243 278 67 93 chr11 35493617 35493934 -115289619 - L1MC4 LINE L1 -145 7897 7594 2306 96 0 0 chr11 35493947 35494239 -115289314 - AluSx SINE Alu -9 303 12 947 234 203 48 chr11 35494461 35494880 -115288673 - L1MC4 LINE L1 -749 7293 6810 228 350 73 8 chr11 35495475 35495598 -115287955 + L2 LINE L2 3183 3313 0 234 330 119 28 chr11 35495618 35495727 -115287826 + MIR SINE MIR 31 149 -59 379 272 138 46 chr11 35495730 35496028 -115287525 - MER102a DNA MER1_type -2 328 7 920 204 0 25 chr11 35496229 35496391 -115287162 - FRAM SINE Alu -8 158 1 2579 49 0 3 chr11 35496403 35496893 -115286660 - AluY SINE Alu 0 489 1 291 293 28 47 chr11 35497200 35497306 -115286247 - MIR SINE MIR -78 184 81 2067 99 0 25 chr11 35497311 35497595 -115285958 + AluSx SINE Alu 1 277 -35 279 54 0 0 chr11 35497595 35497632 -115285921 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 2463 203 61 85 chr11 35497723 35498003 -115285550 + MER63D DNA MER1_type 8 293 -768 420 20 0 0 chr11 35498003 35498052 -115285501 + (TATAG)n Simple_repeat Simple_repeat 2 50 0 2463 203 61 85 chr11 35498052 35498692 -115284861 + MER63D DNA MER1_type 293 906 -155 5863 173 30 9 chr11 35498698 35499750 -115283803 - Tigger6a DNA MER2_type -7 1076 3 851 176 27 0 chr11 35499756 35499904 -115283649 + MER63D DNA MER1_type 911 1062 0 618 287 24 83 chr11 35500231 35500569 -115282984 - MLT1I LTR MaLR -19 390 73 809 159 7 29 chr11 35500626 35500764 -115282789 + MER2 DNA MER2_type 1 135 -210 1629 150 11 28 chr11 35500765 35501051 -115282502 + AluJo SINE Alu 1 281 -31 486 49 0 0 chr11 35501054 35501115 -115282438 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1717 148 27 40 chr11 35501161 35501345 -115282208 - AluJb SINE Alu -18 294 114 240 35 0 0 chr11 35501345 35501374 -115282179 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1717 148 27 40 chr11 35501374 35501487 -115282066 - AluJb SINE Alu -198 114 1 673 196 119 26 chr11 35501488 35501682 -115281871 + MER2 DNA MER2_type 126 337 -8 320 165 44 121 chr11 35501873 35501938 -115281615 + MER5A DNA MER1_type 9 68 -121 2110 113 0 3 chr11 35501938 35502253 -115281300 + AluSx SINE Alu 1 314 0 320 165 44 121 chr11 35502253 35502277 -115281276 + MER5A DNA MER1_type 68 92 -97 195 235 0 0 chr11 35502302 35502400 -115281153 + T-rich Low_complexity Low_complexity 1 98 0 426 130 60 10 chr11 35502656 35502756 -115280797 + CT-rich Low_complexity Low_complexity 2 106 0 711 181 39 0 chr11 35503218 35503345 -115280208 - FLAM_C SINE Alu 0 133 2 1936 185 68 7 chr11 35503366 35503777 -115279776 - L1MB8 LINE L1 -101 6077 5642 181 345 18 0 chr11 35503845 35503900 -115279653 - MIR SINE MIR -164 98 43 2189 106 0 0 chr11 35504157 35504459 -115279094 - AluSx SINE Alu 0 302 1 240 336 72 0 chr11 35504738 35504863 -115278690 + L2 LINE L2 2606 2739 -575 2277 92 3 0 chr11 35505267 35505561 -115277992 - AluSx SINE Alu -17 295 1 753 305 64 17 chr11 35505993 35506229 -115277324 - MIR SINE MIR -4 258 12 2318 101 0 19 chr11 35506683 35506999 -115276554 - AluSg SINE Alu 0 310 1 258 105 0 0 chr11 35507937 35507975 -115275578 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 2253 97 7 0 chr11 35507977 35508265 -115275288 - AluSx SINE Alu -22 290 1 1087 234 164 15 chr11 35508483 35508872 -115274681 + L2 LINE L2 2863 3309 -4 306 290 28 19 chr11 35508878 35508985 -115274568 + L2 LINE L2 3158 3265 -7 206 258 48 16 chr11 35509156 35509218 -115274335 + L2 LINE L2 3243 3306 -7 34 72 0 0 chr11 35509553 35509622 -115273931 + GC_rich Low_complexity Low_complexity 1 69 0 28 29 0 0 chr11 35509884 35509919 -115273634 + GC_rich Low_complexity Low_complexity 1 35 0 320 282 107 58 chr11 35509945 35510356 -115273197 - L1M2 LINE L1 -5736 1113 683 256 158 18 35 chr11 35513151 35513208 -115270345 - L2 LINE L2 0 3272 3217 788 203 6 25 chr11 35513219 35513382 -115270171 + MIR SINE MIR 93 252 -10 216 269 30 0 chr11 35513412 35513479 -115270074 - L2 LINE L2 -26 3246 3178 1814 167 17 53 chr11 35513985 35514344 -115269209 - L1P LINE L1 -3389 2757 2412 183 129 0 0 chr11 35514468 35514499 -115269054 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 516 294 156 12 chr11 35514624 35514784 -115268769 - MER5A DNA MER1_type 0 189 7 * 3272 257 101 21 chr11 35514779 35516179 -115267374 - L2 LINE L2 -128 3185 1670 386 354 16 0 chr11 35517101 35517228 -115266325 - L2 LINE L2 -4 3268 3140 489 264 108 23 chr11 35517246 35517491 -115266062 - Charlie8 DNA MER1_type -1016 1401 36 4686 192 85 34 chr11 35517532 35518892 -115264661 - L1ME1 LINE L1 -5 6161 4649 1125 201 33 9 chr11 35518892 35519106 -115264447 - MER20 DNA MER1_type 0 219 1 4686 192 85 34 chr11 35519106 35519916 -115263637 - L1ME1 LINE L1 -1517 4649 3881 2200 113 0 7 chr11 35519960 35520253 -115263300 + AluSq SINE Alu 1 291 -22 391 237 90 45 chr11 35520274 35520386 -115263167 - L1ME1 LINE L1 -2403 3743 3618 2013 145 0 0 chr11 35520386 35520700 -115262853 + AluSx SINE Alu 1 314 0 391 237 90 45 chr11 35520700 35520763 -115262790 - L1ME1 LINE L1 -2528 3618 3559 2175 139 0 0 chr11 35520864 35521167 -115262386 - AluSx SINE Alu -9 303 1 211 219 0 0 chr11 35521291 35521332 -115262221 + MIR SINE MIR 97 137 -71 27 49 0 0 chr11 35521568 35521609 -115261944 + AT_rich Low_complexity Low_complexity 1 41 0 2600 127 33 0 chr11 35521661 35522024 -115261529 - THE1C LTR MaLR 0 375 1 834 242 15 25 chr11 35523605 35523803 -115259750 - MIR SINE MIR -46 216 21 591 175 101 17 chr11 35524330 35524487 -115259066 + MER63A DNA MER1_type 40 210 0 401 300 94 49 chr11 35525509 35525732 -115257821 - MIR SINE MIR 0 262 30 393 231 92 51 chr11 35525780 35525975 -115257578 - L1MC4 LINE L1 -1 8041 7839 688 197 13 112 chr11 35526026 35526259 -115257294 - L1ME2 LINE L1 -11 6153 5944 600 153 0 0 chr11 35526342 35526427 -115257126 - AluJ/FLAM SINE Alu -227 85 1 253 304 80 0 chr11 35526527 35526639 -115256914 + L2 LINE L2 2615 2735 -579 395 277 89 68 chr11 35526746 35526981 -115256572 + L2 LINE L2 2925 3164 -108 228 290 11 43 chr11 35526988 35527081 -115256472 + Charlie1 DNA MER1_type 1 90 -2671 1539 184 37 0 chr11 35527652 35527773 -115255780 + AluJb SINE Alu 1 116 -216 183 42 0 0 chr11 35527773 35527797 -115255756 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1539 184 37 0 chr11 35527797 35527997 -115255556 + AluJb SINE Alu 116 332 0 645 264 81 25 chr11 35528022 35528219 -115255334 + MER102a DNA MER1_type 87 294 -36 930 269 110 18 chr11 35528225 35528608 -115254945 - MLT1J2 LTR MaLR -18 432 15 253 226 97 0 chr11 35528612 35528674 -115254879 + MER102a DNA MER1_type 274 341 0 540 189 126 0 chr11 35528721 35528832 -115254721 + L2 LINE L2 3189 3313 0 378 91 0 0 chr11 35529131 35529186 -115254367 - L1PB1 LINE L1 -1 6150 6096 1912 128 8 0 chr11 35530261 35530527 -115253026 + AluSx SINE Alu 31 298 -14 2149 124 0 10 chr11 35530668 35530967 -115252586 + AluSg SINE Alu 1 296 -14 2314 60 0 11 chr11 35531046 35531328 -115252225 + AluSg SINE Alu 1 279 -31 414 0 0 0 chr11 35531328 35531374 -115252179 + (CA)n Simple_repeat Simple_repeat 1 46 0 2235 105 16 0 chr11 35531535 35531839 -115251714 - AluSq SINE Alu -4 309 1 324 239 65 11 chr11 35531934 35532026 -115251527 + MER5C DNA MER1_type 28 124 -200 229 239 30 97 chr11 35532282 35532416 -115251137 - L1ME4a LINE L1 -74 6047 5923 2300 116 0 0 chr11 35532568 35532870 -115250683 - AluSx SINE Alu -10 302 1 22 35 0 0 chr11 35533680 35533709 -115249844 + AT_rich Low_complexity Low_complexity 1 29 0 652 273 29 19 chr11 35534387 35534592 -115248961 - MIR SINE MIR -21 241 35 325 114 57 21 chr11 35534805 35534945 -115248608 + (TA)n Simple_repeat Simple_repeat 1 145 0 30 45 0 0 chr11 35534965 35535009 -115248544 + AT_rich Low_complexity Low_complexity 1 44 0 1245 158 200 0 chr11 35535188 35535428 -115248125 - AluJb SINE Alu -10 292 5 274 288 174 0 chr11 35535493 35535625 -115247928 - MER102a DNA MER1_type 0 330 176 869 173 20 81 chr11 35535972 35536169 -115247384 - MER5A DNA MER1_type -2 187 3 287 278 52 21 chr11 35536343 35536440 -115247113 + MER5B DNA MER1_type 59 158 -20 495 153 0 27 chr11 35536663 35536774 -115246779 + CT-rich Low_complexity Low_complexity 2 109 0 8472 115 22 19 chr11 35537259 35537911 -115245642 + HSMAR2 DNA Mariner 1 649 -653 1864 173 0 3 chr11 35537911 35538211 -115245342 + AluJo SINE Alu 1 299 -13 8472 115 22 19 chr11 35538211 35538854 -115244699 + HSMAR2 DNA Mariner 649 1301 -1 190 304 0 71 chr11 35539245 35539357 -115244196 + MIR SINE MIR 104 207 -55 2520 202 14 34 chr11 35539897 35540462 -115243091 + L1MD3 LINE L1 7429 7982 -13 818 272 216 26 chr11 35541198 35541776 -115241777 + L2 LINE L2 1146 1833 -1481 3015 204 39 38 chr11 35541780 35542471 -115241082 - L1MB5 LINE L1 0 6174 5483 5113 59 70 13 chr11 35542471 35543137 -115240416 - L1PA6 LINE L1 -6 6148 5439 2298 107 0 0 chr11 35543137 35543437 -115240116 - AluSq SINE Alu -13 300 1 5113 59 70 13 chr11 35543437 35543465 -115240088 - L1PA6 LINE L1 -715 5439 5414 519 114 45 0 chr11 35543474 35543562 -115239991 - L1MB5 LINE L1 -798 5376 5285 835 227 160 7 chr11 35543562 35543862 -115239691 + L2 LINE L2 1821 2166 -1148 686 241 121 31 chr11 35543878 35544168 -115239385 + L2 LINE L2 2420 2735 -579 564 152 0 0 chr11 35544171 35544270 -115239283 + CT-rich Low_complexity Low_complexity 4 102 0 260 167 33 0 chr11 35544286 35544346 -115239207 + MER103 DNA DNA 83 144 -22 535 105 0 21 chr11 35544348 35544443 -115239110 + (TCCC)n Simple_repeat Simple_repeat 2 94 0 374 284 0 9 chr11 35544919 35545028 -115238525 + L2 LINE L2 3160 3267 -5 4801 109 104 140 chr11 35545028 35546474 -115237079 - pTR5 LTR ERV1 0 2438 66 357 19 0 0 chr11 35546607 35546664 -115236889 - L1P LINE L1 -844 5302 5246 6484 64 11 22 chr11 35546788 35548238 -115235315 + L1PA8A LINE L1 4680 6123 -8 2067 109 7 0 chr11 35548357 35548633 -115234920 + THE1B LTR MaLR 87 364 0 3069 56 2 47 chr11 35548679 35549087 -115234466 - HERVL LTR ERVL -2495 3159 2770 246 225 175 0 chr11 35549801 35549881 -115233672 - MIR SINE MIR -10 252 159 273 149 0 21 chr11 35549887 35549925 -115233628 - MLT2D LTR ERVL -2 412 374 630 71 0 0 chr11 35549925 35550009 -115233544 + (TA)n Simple_repeat Simple_repeat 2 85 0 1336 187 90 25 chr11 35550060 35550381 -115233172 - MER2 DNA MER2_type 0 344 3 1120 207 64 44 chr11 35550401 35550789 -115232764 - MLT2B1 LTR ERVL -40 480 1 426 273 28 14 chr11 35550789 35550932 -115232621 - MIR SINE MIR -99 163 19 294 209 11 77 chr11 35550996 35551087 -115232466 - MIR SINE MIR -94 114 30 389 296 181 10 chr11 35551623 35551822 -115231731 + MIR SINE MIR 28 260 -2 21 0 0 0 chr11 35553013 35553034 -115230519 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr11 35553087 35553107 -115230446 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1827 138 63 8 chr11 35553109 35553377 -115230176 - AluSx SINE Alu -29 283 1 915 279 99 54 chr11 35553387 35553421 -115230132 - L1MEd LINE L1 -3875 2435 2404 831 118 25 103 chr11 35553421 35553556 -115229997 - L1MA4A LINE L1 -1 6302 6187 2297 67 22 29 chr11 35553556 35553869 -115229684 - AluY SINE Alu 0 311 1 831 118 25 103 chr11 35553869 35553936 -115229617 - L1MA4A LINE L1 -116 6187 6116 915 279 99 54 chr11 35553936 35554283 -115229270 - L1MEd LINE L1 -3906 2404 2074 2891 10 0 3 chr11 35554283 35554595 -115228958 - AluYa5 SINE Alu 0 311 1 915 279 99 54 chr11 35554595 35555085 -115228468 - L1MEd LINE L1 -4236 2074 1608 7826 27 0 0 chr11 35555085 35556639 -115226914 - L1PA4 LINE L1 0 6155 4601 915 279 99 54 chr11 35556639 35557306 -115226247 - L1MEd LINE L1 -4702 1608 778 844 158 0 0 chr11 35557338 35557465 -115226088 - FLAM_C SINE Alu -16 127 1 400 249 71 76 chr11 35557520 35557745 -115225808 - L1MEd LINE L1 -5444 675 452 484 184 158 9 chr11 35557812 35557926 -115225627 - Charlie4 DNA MER1_type -13 1948 1818 548 233 73 18 chr11 35558409 35558594 -115224959 + L1MC4a LINE L1 5721 5925 -239 183 219 0 0 chr11 35559118 35559159 -115224394 + L2 LINE L2 3214 3254 -18 768 244 109 9 chr11 35559765 35559994 -115223559 + MIR SINE MIR 9 260 -2 947 161 7 7 chr11 35560006 35560155 -115223398 + MLT1A1 LTR MaLR 171 319 -46 211 324 0 0 chr11 35560166 35560234 -115223319 - L2 LINE L2 -1 3271 3204 2313 111 0 0 chr11 35560262 35560559 -115222994 - AluSx SINE Alu -14 298 2 1918 198 59 86 chr11 35560616 35561173 -115222380 - MLT1F LTR MaLR 0 542 1 194 314 83 16 chr11 35561265 35561386 -115222167 - L2 LINE L2 -235 3037 2909 531 188 0 0 chr11 35561624 35561741 -115221812 + (TCCA)n Simple_repeat Simple_repeat 2 118 0 216 0 0 0 chr11 35561789 35561813 -115221740 + (CA)n Simple_repeat Simple_repeat 1 24 0 531 253 62 10 chr11 35561826 35562020 -115221533 + L2 LINE L2 3107 3310 -3 30 0 0 0 chr11 35562224 35562254 -115221299 + AT_rich Low_complexity Low_complexity 1 30 0 1018 67 22 15 chr11 35562254 35562389 -115221164 - L1PA8 LINE L1 -9 6163 6028 370 172 69 35 chr11 35563241 35563357 -115220196 + L1ME4a LINE L1 5991 6110 -11 1655 187 0 27 chr11 35564441 35564765 -115218788 + AluJo SINE Alu 1 312 0 330 240 86 15 chr11 35566084 35566220 -115217333 - MIR SINE MIR -54 154 3 473 25 114 101 chr11 35566448 35566491 -115217062 - MADE1 DNA Mariner 0 80 39 2325 87 0 3 chr11 35566491 35566780 -115216773 + AluY SINE Alu 1 288 -23 252 0 0 0 chr11 35566780 35566808 -115216745 + (TATG)n Simple_repeat Simple_repeat 1 28 0 473 25 114 101 chr11 35566808 35566842 -115216711 - MADE1 DNA Mariner -40 40 1 373 330 6 29 chr11 35567548 35567721 -115215832 + L3 LINE CR1 920 1088 -489 2482 50 0 0 chr11 35568973 35569296 -115214257 + AluY SINE Alu 1 323 0 683 161 253 0 chr11 35569419 35569581 -115213972 - MER3 DNA MER1_type 0 209 7 1830 179 0 3 chr11 35570580 35570877 -115212676 - AluJb SINE Alu -16 296 1 223 198 33 77 chr11 35571877 35571968 -115211585 - L2 LINE L2 -213 3059 2973 824 247 105 37 chr11 35571991 35572549 -115211004 + MER115 DNA AcHobo 58 693 0 2846 10 0 0 chr11 35573845 35574147 -115209406 + AluYa5 SINE Alu 1 302 -9 396 200 100 8 chr11 35575072 35575192 -115208361 + L1ME4a LINE L1 5974 6104 -17 322 295 203 0 chr11 35575415 35575632 -115207921 - MIR SINE MIR 0 262 2 698 293 39 26 chr11 35575838 35576067 -115207486 - MIR SINE MIR 0 262 31 415 331 19 19 chr11 35576756 35576910 -115206643 + MIR SINE MIR 1 154 -108 302 205 152 45 chr11 35576911 35576999 -115206554 + MER104 DNA Tc2 2 106 -1792 1593 176 41 14 chr11 35576999 35577294 -115206259 - AluJb SINE Alu -9 303 1 302 205 152 45 chr11 35577294 35577317 -115206236 + MER104 DNA Tc2 106 125 -55 22 0 0 0 chr11 35577498 35577520 -115206033 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 35577622 35577646 -115205907 + AT_rich Low_complexity Low_complexity 1 24 0 563 286 49 27 chr11 35578152 35578376 -115205177 - MIR SINE MIR -14 248 20 405 58 0 0 chr11 35578630 35578682 -115204871 + (TG)n Simple_repeat Simple_repeat 1 52 0 201 342 35 40 chr11 35578797 35578996 -115204557 + L2 LINE L2 2638 2835 -479 2290 107 10 3 chr11 35579209 35579519 -115204034 - AluSx SINE Alu 0 312 1 2554 62 9 0 chr11 35579817 35580155 -115203398 + L1PA6 LINE L1 4799 5139 -1007 7183 62 5 1 chr11 35580280 35581292 -115202261 + L1PA6 LINE L1 5135 6149 -5 4860 168 29 10 chr11 35583197 35584604 -115198949 - L1MB7 LINE L1 -15 6169 4734 1363 144 57 84 chr11 35584620 35584919 -115198634 - AluJb SINE Alu -21 291 1 848 154 16 0 chr11 35585160 35585283 -115198270 - FLAM_A SINE Alu -8 125 1 335 258 245 0 chr11 35586081 35586244 -115197309 - MLT1J LTR MaLR -50 461 259 1304 191 92 31 chr11 35586292 35586586 -115196967 - AluJo SINE Alu 0 312 1 542 275 164 0 chr11 35586586 35586775 -115196778 - MLT1J LTR MaLR -291 220 1 493 324 77 69 chr11 35587315 35587664 -115195889 - L2 LINE L2 -1 3271 2920 2349 167 32 2 chr11 35588014 35588422 -115195131 - MSTB LTR MaLR -6 420 1 585 321 40 18 chr11 35588708 35588932 -115194621 + MIR SINE MIR 20 248 -14 858 209 6 18 chr11 35589573 35589736 -115193817 + FRAM SINE Alu 1 158 -18 1724 153 10 48 chr11 35589736 35590049 -115193504 + AluJo SINE Alu 1 301 -11 633 289 186 27 chr11 35590621 35591174 -115192379 + L2 LINE L2 2672 3313 0 297 51 0 0 chr11 35591669 35591708 -115191845 + (CA)n Simple_repeat Simple_repeat 1 39 0 362 309 112 78 chr11 35591740 35592009 -115191544 + L2 LINE L2 2988 3265 -7 186 43 0 0 chr11 35592017 35592040 -115191513 + (CA)n Simple_repeat Simple_repeat 1 23 0 274 186 57 0 chr11 35592825 35592895 -115190658 - MIR SINE MIR -41 221 148 21 0 0 0 chr11 35592895 35592916 -115190637 + AT_rich Low_complexity Low_complexity 1 21 0 580 82 0 0 chr11 35592918 35592991 -115190562 - AluSc SINE Alu -27 282 210 867 76 0 0 chr11 35592991 35593096 -115190457 - AluSc SINE Alu -204 105 1 495 189 85 28 chr11 35593098 35593204 -115190349 - MIR SINE MIR -102 160 49 180 0 0 0 chr11 35594210 35594230 -115189323 + (TG)n Simple_repeat Simple_repeat 1 20 0 1456 248 163 16 chr11 35594249 35594741 -115188812 - L1ME1 LINE L1 -5 6161 5598 320 145 16 0 chr11 35595499 35595561 -115187992 - L1PA15 LINE L1 -5 6160 6098 489 323 80 10 chr11 35596162 35596562 -115186991 - L1ME1 LINE L1 -1645 4501 4074 1978 135 10 7 chr11 35596735 35597031 -115186522 - AluSx SINE Alu -12 300 4 306 285 15 39 chr11 35597171 35597301 -115186252 + CT-rich Low_complexity Low_complexity 2 128 0 2202 165 40 3 chr11 35597735 35598086 -115185467 + THE1B LTR MaLR 1 364 0 683 311 21 8 chr11 35598593 35598834 -115184719 + MIR SINE MIR 15 258 -4 26 0 0 0 chr11 35599633 35599659 -115183894 + AT_rich Low_complexity Low_complexity 1 26 0 3833 124 38 5 chr11 35599690 35600303 -115183250 - L1MA8 LINE L1 -18 6273 5641 1465 138 13 4 chr11 35600300 35600525 -115183028 + L1MA8 LINE L1 5431 5657 -655 * 21 0 0 0 chr11 35600709 35600730 -115182823 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr11 35601565 35601590 -115181963 + (T)n Simple_repeat Simple_repeat 1 25 0 672 251 37 25 chr11 35601773 35601936 -115181617 - MER5B DNA MER1_type -12 166 2 253 318 100 9 chr11 35602152 35602262 -115181291 + MIR SINE MIR 27 146 -62 807 292 22 13 chr11 35602649 35602875 -115180678 - MIR SINE MIR 0 262 35 325 299 100 30 chr11 35602955 35603100 -115180453 - MIR SINE MIR -88 120 19 240 191 0 0 chr11 35603139 35603186 -115180367 - MIR SINE MIR -56 206 160 1433 246 107 26 chr11 35603228 35603278 -115180275 - MLT1J1 LTR MaLR -12 434 390 1529 191 48 94 chr11 35603278 35603670 -115179883 - MLT1A2 LTR MaLR 0 374 1 1433 246 107 26 chr11 35603670 35604010 -115179543 - MLT1J1 LTR MaLR -56 390 12 528 311 51 51 chr11 35604050 35604285 -115179268 - MIR SINE MIR -15 247 13 196 231 26 0 chr11 35604312 35604351 -115179202 + MIR SINE MIR 38 77 -131 1674 162 79 4 chr11 35604490 35604768 -115178785 - AluJb SINE Alu -13 299 1 562 247 160 0 chr11 35604944 35605094 -115178459 - MER5A DNA MER1_type -5 184 11 319 303 107 0 chr11 35605216 35605338 -115178215 + L2 LINE L2 3136 3270 -2 2033 132 3 3 chr11 35606251 35606539 -115177014 + AluSx SINE Alu 2 289 -23 948 153 101 48 chr11 35607315 35607607 -115175946 + MSTD LTR MaLR 1 361 -34 453 206 15 132 chr11 35608073 35608209 -115175344 + MER5B DNA MER1_type 59 178 0 180 0 0 0 chr11 35609249 35609269 -115174284 + (TTA)n Simple_repeat Simple_repeat 2 21 0 7492 18 0 0 chr11 35609291 35610129 -115173424 - L1PA3 LINE L1 0 6155 5318 2122 101 3 3 chr11 35610142 35610428 -115173125 - AluSx SINE Alu -26 286 1 720 282 86 83 chr11 35610831 35611463 -115172090 + L2 LINE L2 2640 3293 -20 367 239 44 53 chr11 35612049 35612162 -115171391 + MIR SINE MIR 28 139 -123 1418 142 0 26 chr11 35612172 35612398 -115171155 + AluJo SINE Alu 1 220 -92 779 229 125 39 chr11 35612592 35612969 -115170584 - MLT1G LTR MaLR -104 486 1 359 248 107 16 chr11 35613586 35613707 -115169846 + L2 LINE L2 3179 3310 -3 269 339 83 21 chr11 35613769 35613961 -115169592 - L3 LINE CR1 -703 874 671 243 279 19 67 chr11 35613934 35614038 -115169515 - L2 LINE L2 -3 3269 3171 * 287 263 184 26 chr11 35614353 35614467 -115169086 - MIR SINE MIR -111 151 20 280 244 33 33 chr11 35614468 35614558 -115168995 + MIR SINE MIR 167 256 -6 1489 140 16 8 chr11 35614719 35614976 -115168577 + L1MA4 LINE L1 6042 6300 0 21 0 0 0 chr11 35615003 35615024 -115168529 + AT_rich Low_complexity Low_complexity 1 21 0 370 275 57 33 chr11 35615610 35615821 -115167732 - L2 LINE L2 -1 3312 3097 969 221 74 5 chr11 35615881 35616098 -115167455 - MIR SINE MIR 0 262 31 528 279 54 58 chr11 35616862 35617102 -115166451 + MIR SINE MIR 3 241 -21 1958 204 84 51 chr11 35617127 35617675 -115165878 - L1ME3A LINE L1 -5 6165 5600 2306 85 7 3 chr11 35618145 35618438 -115165115 + AluSx SINE Alu 1 294 -18 324 265 103 97 chr11 35618489 35618597 -115164956 - MIR SINE MIR -4 258 152 294 29 0 0 chr11 35618597 35618632 -115164921 + (TTCCC)n Simple_repeat Simple_repeat 1 35 0 2168 137 0 0 chr11 35618633 35618933 -115164620 - AluSx SINE Alu -12 300 1 1984 147 3 0 chr11 35618938 35619231 -115164322 - AluJb SINE Alu -18 294 1 324 265 103 97 chr11 35619231 35619299 -115164254 - MIR SINE MIR -113 149 73 833 241 38 83 chr11 35620041 35620307 -115163246 - MIR SINE MIR -1 261 8 1658 161 45 7 chr11 35620609 35620895 -115162658 + AluJo SINE Alu 1 297 -15 1093 192 186 39 chr11 35621298 35621688 -115161865 - MER110A LTR ERV1 0 468 53 181 286 179 0 chr11 35621831 35621915 -115161638 + MIR SINE MIR 158 256 -6 336 280 55 55 chr11 35621984 35622184 -115161369 - LTR67 LTR ERVL -4 553 354 390 311 34 14 chr11 35622969 35623117 -115160436 + MIR3 SINE MIR 35 185 -23 181 104 0 42 chr11 35624295 35624343 -115159210 + (TC)n Simple_repeat Simple_repeat 1 46 0 1980 127 0 4 chr11 35624377 35624652 -115158901 - AluSx SINE Alu -38 274 1 195 270 90 0 chr11 35625530 35625619 -115157934 + MIR SINE MIR 140 236 -26 512 314 92 21 chr11 35625881 35626120 -115157433 + MIR SINE MIR 1 256 -6 1874 147 7 0 chr11 35626600 35626886 -115156667 - AluJb SINE Alu -24 288 1 498 332 97 5 chr11 35626892 35627088 -115156465 - MIR SINE MIR -36 226 13 211 312 21 21 chr11 35627665 35627758 -115155795 + CT-rich Low_complexity Low_complexity 3 95 0 246 239 56 14 chr11 35630039 35630110 -115153443 + MIR3 SINE MIR 88 161 -47 376 299 52 8 chr11 35630168 35630302 -115153251 - MER117 DNA MER1_type -26 171 32 2903 10 0 0 chr11 35630305 35630616 -115152937 - AluY SINE Alu 0 311 1 653 168 97 38 chr11 35631837 35632022 -115151531 + L1MC5 LINE L1 7331 7526 -435 2314 112 0 0 chr11 35632028 35632332 -115151221 + AluSg1 SINE Alu 4 307 -2 262 357 48 16 chr11 35632455 35632581 -115150972 - MIR SINE MIR -60 148 19 1412 158 17 33 chr11 35632962 35633202 -115150351 - MER46A DNA MER2_type 0 236 1 2255 203 17 25 chr11 35634116 35634595 -115148958 - L1MA10 LINE L1 0 6334 5860 504 0 0 0 chr11 35634850 35634906 -115148647 + (CA)n Simple_repeat Simple_repeat 2 57 0 1666 158 3 37 chr11 35635046 35635344 -115148209 + AluJo SINE Alu 1 288 -24 896 260 17 22 chr11 35635452 35635683 -115147870 + MIR SINE MIR 14 243 -19 198 250 45 0 chr11 35635693 35635737 -115147816 + L2 LINE L2 3224 3269 -3 1815 137 7 25 chr11 35636795 35637079 -115146474 + AluJo SINE Alu 17 295 -17 319 252 87 26 chr11 35637424 35637539 -115146014 + MER103 DNA DNA 1 122 -44 21 0 0 0 chr11 35637949 35637970 -115145583 + AT_rich Low_complexity Low_complexity 1 21 0 241 276 124 68 chr11 35638080 35638804 -115144749 - L1M4 LINE L1 -2420 3726 2962 14276 121 24 18 chr11 35639210 35641421 -115142132 + L1PB1 LINE L1 1 2223 -4640 6028 128 20 28 chr11 35641419 35642003 -115141550 + L1PB1 LINE L1 5518 6105 -762 * 2769 104 0 3 chr11 35642003 35642368 -115141185 + THE1B LTR MaLR 1 364 0 6028 128 20 28 chr11 35642368 35643136 -115140417 + L1PB1 LINE L1 6105 6860 -7 1842 180 3 0 chr11 35643219 35643514 -115140039 + AluJb SINE Alu 1 296 -16 521 338 38 4 chr11 35643588 35643825 -115139728 - MIR SINE MIR -1 261 17 2434 68 0 40 chr11 35644278 35644602 -115138951 + AluY SINE Alu 1 311 0 432 0 0 0 chr11 35644602 35644650 -115138903 + (TA)n Simple_repeat Simple_repeat 2 49 0 2018 131 10 7 chr11 35645357 35645663 -115137890 + AluSx SINE Alu 1 307 -5 358 285 54 54 chr11 35646221 35646407 -115137146 + MIR SINE MIR 21 206 -56 1036 200 27 22 chr11 35646578 35646803 -115136750 - MIR SINE MIR -10 252 27 1929 113 38 34 chr11 35648266 35648558 -115134995 - AluSq SINE Alu -20 293 1 2269 206 65 55 chr11 35649068 35649556 -115133997 - MLT1E LTR MaLR 0 593 97 1848 163 3 16 chr11 35649556 35649862 -115133691 + AluJb SINE Alu 1 302 -10 2269 206 65 55 chr11 35649862 35649960 -115133593 - MLT1E LTR MaLR -496 97 1 1777 236 92 14 chr11 35650328 35650837 -115132716 - MLT1G LTR MaLR 0 590 42 286 274 11 21 chr11 35650896 35650991 -115132562 - L3 LINE CR1 -1 1576 1483 * 489 363 91 18 chr11 35650988 35651599 -115131954 + L2 LINE L2 2593 3254 -18 207 100 0 0 chr11 35651609 35651639 -115131914 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 427 343 17 11 chr11 35651682 35651863 -115131690 - L3 LINE CR1 -124 1453 1272 2380 112 21 24 chr11 35652117 35652493 -115131060 - THE1C LTR MaLR 0 375 1 242 324 65 29 chr11 35652627 35652766 -115130787 - L3 LINE CR1 -449 1128 985 294 378 67 18 chr11 35652988 35653319 -115130234 - L3 LINE CR1 -579 998 652 180 77 0 0 chr11 35653812 35653838 -115129715 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 627 301 0 19 chr11 35653843 35654052 -115129501 - MLT1I LTR MaLR -204 205 1 206 355 56 89 chr11 35654190 35654404 -115129149 - L3 LINE CR1 -972 605 399 1166 183 5 27 chr11 35659618 35659842 -115123711 + MER20 DNA MER1_type 1 219 0 301 276 161 65 chr11 35660501 35660856 -115122697 + L2 LINE L2 2379 2767 -547 1877 155 17 46 chr11 35660879 35661228 -115122325 - MER44D DNA MER2_type 0 609 1 223 317 41 41 chr11 35661247 35661392 -115122161 + L2 LINE L2 2916 3060 -212 2156 109 7 0 chr11 35662284 35662569 -115120984 + AluSx SINE Alu 1 287 -25 1417 221 51 71 chr11 35663227 35663720 -115119833 + MER113 DNA MER1_type? 6 488 -33 2019 160 0 3 chr11 35663887 35664200 -115119353 + AluJb SINE Alu 1 312 0 752 196 0 7 chr11 35664236 35664389 -115119164 + L1MB3 LINE L1 6029 6180 -3 22 35 0 0 chr11 35664471 35664500 -115119053 + AT_rich Low_complexity Low_complexity 1 29 0 459 0 0 0 chr11 35666819 35666870 -115116683 + (CA)n Simple_repeat Simple_repeat 2 52 0 535 241 96 6 chr11 35666879 35667045 -115116508 - MIR SINE MIR -16 246 66 858 165 0 0 chr11 35667330 35667463 -115116090 - AluJo SINE Alu -177 135 3 182 292 0 0 chr11 35667925 35667973 -115115580 - L2 LINE L2 -4 3268 3221 1146 284 159 14 chr11 35668515 35669019 -115114534 - MLT1K LTR MaLR -4 584 8 4995 167 26 46 chr11 35669310 35671058 -115112495 + L1MB4 LINE L1 4462 6180 0 1958 151 3 7 chr11 35671150 35671454 -115112099 - AluJo SINE Alu -9 303 1 22 35 0 0 chr11 35671516 35671545 -115112008 + AT_rich Low_complexity Low_complexity 1 29 0 1672 181 0 0 chr11 35671780 35672056 -115111497 + AluJo SINE Alu 11 286 -26 675 118 0 0 chr11 35672173 35672275 -115111278 + L1MA4A LINE L1 6189 6290 -13 228 292 8 25 chr11 35672615 35672735 -115110818 - LTR33 LTR ERVL -403 118 1 2250 107 10 13 chr11 35672994 35673303 -115110250 - AluSx SINE Alu -4 308 1 784 257 63 8 chr11 35673536 35673773 -115109780 + MIR SINE MIR 13 262 0 561 248 25 28 chr11 35674336 35674529 -115109024 - MIR SINE MIR -55 207 3 304 214 0 0 chr11 35675161 35675231 -115108322 - MIR SINE MIR -3 259 190 600 212 18 0 chr11 35675653 35675766 -115107787 + FLAM_A SINE Alu 1 115 -18 2152 154 16 24 chr11 35676557 35676837 -115106716 - MLT1B LTR MaLR 0 390 112 2325 110 0 7 chr11 35676837 35677146 -115106407 - AluSq SINE Alu -6 307 1 2152 154 16 24 chr11 35677146 35677241 -115106312 - MLT1B LTR MaLR -278 112 18 1937 135 44 14 chr11 35677241 35677537 -115106016 + AluSx SINE Alu 1 305 -7 340 325 0 16 chr11 35678868 35678994 -115104559 + MIR3 SINE MIR 54 177 -31 392 258 126 25 chr11 35679545 35679743 -115103810 - MIR SINE MIR -25 237 20 23 33 0 0 chr11 35679871 35679901 -115103652 + AT_rich Low_complexity Low_complexity 1 30 0 1795 158 24 0 chr11 35679901 35680192 -115103361 + AluJb SINE Alu 1 298 -14 691 158 55 0 chr11 35680195 35680322 -115103231 - L1MB4 LINE L1 -2 6178 6045 330 250 30 89 chr11 35681410 35681578 -115101975 - MIR SINE MIR -37 225 68 546 217 130 31 chr11 35681947 35682108 -115101445 + MIR SINE MIR 20 196 -66 954 278 173 7 chr11 35682908 35683329 -115100224 + LTR16C LTR ERVL 1 491 0 189 100 0 0 chr11 35684150 35684172 -115099381 + (TC)n Simple_repeat Simple_repeat 1 25 -5 2315 108 0 0 chr11 35684172 35684467 -115099086 - AluSg SINE Alu -15 295 1 189 100 0 0 chr11 35684467 35684474 -115099079 + (TC)n Simple_repeat Simple_repeat 24 30 0 371 257 164 23 chr11 35684949 35685120 -115098433 + L1ME4a LINE L1 5386 5580 -541 2158 112 0 0 chr11 35685168 35685444 -115098109 + AluSc SINE Alu 1 276 -33 2268 141 76 5 chr11 35685569 35685966 -115097587 - MSTA LTR MaLR -3 425 1 449 264 16 0 chr11 35685996 35686125 -115097428 - MER103 DNA DNA -1 165 35 2306 114 0 0 chr11 35686205 35686502 -115097051 - AluSx SINE Alu -15 297 1 2783 191 59 12 chr11 35686662 35687311 -115096242 - L1ME2 LINE L1 -196 5968 5290 481 300 41 27 chr11 35687592 35687812 -115095741 - L1ME3A LINE L1 -273 5897 5675 231 216 147 20 chr11 35688006 35688108 -115095445 + L1ME4a LINE L1 5708 5822 -299 386 270 68 21 chr11 35688149 35688386 -115095167 + L1ME4a LINE L1 5874 6121 0 327 256 64 48 chr11 35689703 35689828 -115093725 - MIR SINE MIR -126 136 10 725 281 215 45 chr11 35690743 35691822 -115091731 - L2 LINE L2 -686 2628 1366 267 243 213 30 chr11 35691919 35692088 -115091465 + L2 LINE L2 466 665 -2649 211 356 84 21 chr11 35692604 35692795 -115090758 + L2 LINE L2 2583 2785 -529 588 294 16 33 chr11 35693199 35693444 -115090109 + MIR SINE MIR 10 250 -12 2203 123 7 0 chr11 35694457 35694767 -115088786 + AluSx SINE Alu 1 312 0 1121 239 31 59 chr11 35694825 35695281 -115088272 - L2 LINE L2 0 3313 2871 315 0 0 0 chr11 35695563 35695598 -115087955 + (TG)n Simple_repeat Simple_repeat 2 36 0 249 204 0 0 chr11 35695695 35695749 -115087804 + MIR SINE MIR 104 157 -105 201 244 0 0 chr11 35695758 35695803 -115087750 + L2 LINE L2 3210 3254 -18 367 173 105 83 chr11 35696753 35696886 -115086667 - L1ME2 LINE L1 -62 6102 5967 443 91 0 0 chr11 35697287 35697353 -115086200 - MIR SINE MIR -118 144 79 393 208 115 0 chr11 35697864 35697960 -115085593 - MIR SINE MIR -46 216 110 331 292 153 42 chr11 35697979 35698091 -115085462 - MIR3 SINE MIR -28 180 47 1758 176 64 9 chr11 35698091 35698437 -115085116 + MLT1A1 LTR MaLR 1 365 0 331 292 153 42 chr11 35698437 35698468 -115085085 - MIR3 SINE MIR -161 47 21 277 257 50 93 chr11 35698784 35698924 -115084629 - MIR SINE MIR -64 198 65 2478 87 3 0 chr11 35699402 35699711 -115083842 + AluSp SINE Alu 1 310 -3 552 260 0 13 chr11 35700922 35701076 -115082477 + MIR SINE MIR 72 223 -39 546 213 81 12 chr11 35701181 35701341 -115082212 + MIR SINE MIR 92 262 0 519 185 35 40 chr11 35701556 35701724 -115081829 + MIR SINE MIR 33 198 -61 576 301 29 10 chr11 35702137 35702346 -115081207 + MIR SINE MIR 11 223 -39 7251 24 12 2 chr11 35703223 35704075 -115079478 + L1PA4 LINE L1 5285 6144 -11 633 195 6 198 chr11 35704220 35704543 -115079010 - MIR SINE MIR 0 262 2 249 242 45 0 chr11 35704905 35704971 -115078582 - MIR SINE MIR -112 150 82 229 320 107 8 chr11 35706147 35706269 -115077284 - L2 LINE L2 -190 3082 2949 236 402 66 4 chr11 35706345 35706589 -115076964 - L2 LINE L2 -462 2852 2594 2263 273 90 36 chr11 35706713 35707314 -115076239 - L2 LINE L2 -5 3308 2741 1663 167 3 30 chr11 35707314 35707613 -115075940 + AluJo SINE Alu 1 291 -21 2263 273 90 36 chr11 35707613 35708287 -115075266 - L2 LINE L2 -572 2741 1969 1171 254 53 60 chr11 35708413 35708847 -115074706 - MLT1H LTR MaLR 0 549 119 2260 111 0 7 chr11 35709397 35709694 -115073859 - AluSx SINE Alu -17 295 1 1990 123 14 7 chr11 35710620 35710905 -115072648 + AluSx SINE Alu 1 287 -25 598 245 36 0 chr11 35711242 35711381 -115072172 + MER103 DNA DNA 8 151 -15 245 241 19 0 chr11 35711529 35711583 -115071970 + G-rich Low_complexity Low_complexity 5 59 0 250 340 56 15 chr11 35711985 35712184 -115071369 + MIR SINE MIR 35 242 -20 354 23 0 0 chr11 35712352 35712395 -115071158 + (TG)n Simple_repeat Simple_repeat 2 44 0 252 86 0 0 chr11 35713660 35713695 -115069858 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 227 30 0 30 chr11 35714713 35714746 -115068807 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 749 310 105 21 chr11 35717327 35717690 -115065863 - L2 LINE L2 -1 3312 2981 2537 62 10 0 chr11 35717690 35717996 -115065557 + AluSq SINE Alu 1 309 -4 749 310 105 21 chr11 35717996 35718255 -115065298 - L2 LINE L2 -332 2981 2619 1962 231 61 32 chr11 35718264 35718459 -115065094 - MLT1F LTR MaLR 0 542 354 4522 98 18 15 chr11 35718459 35719125 -115064428 + L1PB2 LINE L1 5483 6150 -1 1962 231 61 32 chr11 35719125 35719316 -115064237 - MLT1F LTR MaLR -188 354 135 396 0 0 0 chr11 35719316 35719360 -115064193 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1962 231 61 32 chr11 35719360 35719499 -115064054 - MLT1F LTR MaLR -407 135 1 383 281 59 22 chr11 35722085 35722220 -115061333 - MIR3 SINE MIR -54 154 15 735 216 159 24 chr11 35722251 35722459 -115061094 + MIR SINE MIR 6 241 -21 231 36 0 0 chr11 35722460 35722488 -115061065 + (ATG)n Simple_repeat Simple_repeat 2 29 0 197 293 86 0 chr11 35724604 35724662 -115058891 - L2 LINE L2 -1 3312 3250 219 313 16 0 chr11 35724721 35724785 -115058768 - L2 LINE L2 -71 3201 3137 1249 162 50 5 chr11 35724909 35725230 -115058323 - MSTD LTR MaLR 0 396 2 1001 123 0 0 chr11 35726584 35726722 -115056831 - FLAM_C SINE Alu -5 138 1 335 68 23 0 chr11 35726724 35726768 -115056785 - MSTA LTR MaLR -9 419 375 5471 115 9 1 chr11 35726768 35727578 -115055975 - L1PA14 LINE L1 0 6161 5346 1761 128 196 6 chr11 35727578 35727905 -115055648 - MSTA LTR MaLR -39 389 1 226 315 168 30 chr11 35728096 35728293 -115055260 + LTR16C LTR ERVL 11 234 -257 1221 198 23 48 chr11 35728326 35728642 -115054911 + MER74A LTR ERVL 1 225 -235 692 130 22 87 chr11 35728646 35728697 -115054856 + MER74A LTR ERVL 430 483 -75 486 0 0 0 chr11 35728697 35728751 -115054802 + (TA)n Simple_repeat Simple_repeat 2 55 0 2206 99 0 40 chr11 35728754 35729076 -115054477 - AluSc SINE Alu 0 309 1 692 130 22 87 chr11 35729076 35729158 -115054395 + MER74A LTR ERVL 485 558 0 793 259 15 0 chr11 35729158 35729355 -115054198 + LTR16C LTR ERVL 282 481 -10 1604 246 67 9 chr11 35730222 35730653 -115052900 - MLT1K LTR MaLR -4 584 129 1720 158 24 7 chr11 35731025 35731316 -115052237 + AluJb SINE Alu 4 299 -13 903 253 147 9 chr11 35731621 35731941 -115051612 + L2 LINE L2 2931 3294 -19 208 167 0 0 chr11 35731910 35731946 -115051607 + MIR SINE MIR 219 254 -8 * 1037 119 12 0 chr11 35731955 35732123 -115051430 + (TGGA)n Simple_repeat Simple_repeat 1 170 0 450 312 41 12 chr11 35734662 35734832 -115048721 - MIR SINE MIR -8 254 80 180 152 0 0 chr11 35735320 35735353 -115048200 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 909 240 111 11 chr11 35738222 35738493 -115045060 - LTR16A LTR ERVL -98 352 55 21 0 0 0 chr11 35738899 35738920 -115044633 + AT_rich Low_complexity Low_complexity 1 21 0 43641 31 23 5 chr11 35738924 35744971 -115038582 - L1PA3 LINE L1 0 6155 3 422 302 97 58 chr11 35745451 35745586 -115037967 + L2 LINE L2 2842 2970 -302 878 210 33 23 chr11 35745586 35745800 -115037753 - MER20 DNA MER1_type -3 216 1 422 302 97 58 chr11 35745800 35746078 -115037475 + L2 LINE L2 2970 3271 -1 304 313 96 48 chr11 35746349 35746681 -115036872 - MLT1K LTR MaLR -156 432 85 1461 185 38 24 chr11 35746750 35746913 -115036640 - AluJo SINE Alu -10 292 122 207 0 0 0 chr11 35746913 35746936 -115036617 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1461 185 38 24 chr11 35746936 35747059 -115036494 - AluJo SINE Alu -180 122 2 2012 114 0 78 chr11 35747133 35747467 -115036086 - AluSq SINE Alu -5 308 1 656 247 7 6 chr11 35747937 35748109 -115035444 + MIR SINE MIR 49 216 -46 2190 116 0 0 chr11 35748199 35748508 -115035045 - AluSx SINE Alu 0 309 1 284 217 217 11 chr11 35749948 35750040 -115033513 - L2 LINE L2 0 3313 3203 2410 195 84 56 chr11 35750040 35750512 -115033041 + MER44D DNA MER2_type 13 385 -2102 1981 123 63 0 chr11 35750512 35750796 -115032757 - AluSx SINE Alu -10 302 1 2410 195 84 56 chr11 35750796 35751021 -115032532 + MER44D DNA MER2_type 385 602 -3 382 274 181 7 chr11 35751026 35751303 -115032250 - L2 LINE L2 -112 3201 2877 489 276 214 27 chr11 35751307 35751693 -115031860 + L2 LINE L2 2428 2740 -532 1858 142 55 85 chr11 35751693 35752095 -115031458 - MLT1B LTR MaLR 0 390 1 489 276 214 27 chr11 35752095 35752243 -115031310 + L2 LINE L2 2740 3071 -201 3238 204 88 30 chr11 35752279 35752580 -115030973 - L1ME2 LINE L1 -19 6145 5863 308 43 22 0 chr11 35752580 35752626 -115030927 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3238 204 88 30 chr11 35752626 35753258 -115030295 - L1ME2 LINE L1 -301 5863 5150 355 254 82 99 chr11 35753600 35753698 -115029855 + L1ME4a LINE L1 5583 5681 -440 2295 108 0 0 chr11 35753698 35754005 -115029548 - AluSx SINE Alu -5 307 1 355 254 82 99 chr11 35754005 35754281 -115029272 + L1ME4a LINE L1 5681 5963 -158 206 207 17 0 chr11 35754292 35754350 -115029203 + (TA)n Simple_repeat Simple_repeat 1 59 0 443 199 48 41 chr11 35754790 35754936 -115028617 + L1ME4a LINE L1 5956 6102 -19 271 313 82 14 chr11 35755380 35755527 -115028026 - L2 LINE L2 0 3272 3116 189 222 8 167 chr11 35755522 35755648 -115027905 - MIR SINE MIR 0 262 157 * 558 0 0 0 chr11 35755738 35755800 -115027753 + (TA)n Simple_repeat Simple_repeat 1 62 0 729 292 86 0 chr11 35755800 35756033 -115027520 + MIR SINE MIR 10 262 0 291 333 48 8 chr11 35756049 35756175 -115027378 + L2 LINE L2 3137 3267 -5 293 291 29 29 chr11 35756331 35756434 -115027119 - MIR3 SINE MIR -43 165 63 1953 185 98 49 chr11 35756497 35757006 -115026547 - LTR10A LTR ERV1 -61 548 15 287 231 213 28 chr11 35757857 35757965 -115025588 + MIR3 SINE MIR 65 192 -16 21 36 0 0 chr11 35758273 35758301 -115025252 + AT_rich Low_complexity Low_complexity 1 28 0 482 183 111 8 chr11 35758708 35758834 -115024719 - MIR SINE MIR -26 236 98 531 176 0 0 chr11 35759235 35759326 -115024227 - MER5A DNA MER1_type 0 189 99 500 286 138 35 chr11 35760573 35760644 -115022909 + MIR SINE MIR 4 66 -196 2307 121 43 88 chr11 35760644 35761108 -115022445 + MER65A LTR ERV1 3 445 0 500 286 138 35 chr11 35761108 35761267 -115022286 + MIR SINE MIR 66 258 -4 1849 174 30 0 chr11 35761268 35761566 -115021987 + AluJb SINE Alu 1 307 -5 21 0 0 0 chr11 35761747 35761768 -115021785 + AT_rich Low_complexity Low_complexity 1 21 0 2138 93 0 24 chr11 35762150 35762461 -115021092 - AluSx SINE Alu 0 304 1 688 267 40 13 chr11 35763071 35763296 -115020257 - MIR SINE MIR -12 250 20 1464 144 94 67 chr11 35763397 35763696 -115019857 + AluJo SINE Alu 1 307 -5 715 186 8 0 chr11 35763929 35764053 -115019500 + FLAM_A SINE Alu 18 142 0 1929 106 0 0 chr11 35765371 35765626 -115017927 + AluSg SINE Alu 50 304 -6 7619 34 14 0 chr11 35766122 35767368 -115016185 - L1PA4 LINE L1 -14 6141 4889 43454 35 22 1 chr11 35768101 35774164 -115009389 + L1PA3 LINE L1 1 6191 0 36252 86 11 7 chr11 35774558 35779555 -115003998 + L1P LINE L1 238 5254 -892 1212 58 0 0 chr11 35779555 35779705 -115003848 + L1PA6 LINE L1 6000 6153 -1 1369 224 63 15 chr11 35779706 35780104 -115003449 - L1M4c LINE L1 -4768 1616 1200 261 119 0 0 chr11 35780215 35780257 -115003296 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 182 36 0 36 chr11 35781291 35781319 -115002234 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 228 293 50 20 chr11 35781408 35781507 -115002046 - L2 LINE L2 -3 3269 3168 1097 285 79 42 chr11 35781659 35782284 -115001269 - L1MEd LINE L1 -4745 1565 832 2251 95 0 3 chr11 35782284 35782569 -115000984 - AluSg SINE Alu -26 284 1 1097 285 79 42 chr11 35782569 35782838 -115000715 - L1MEd LINE L1 -5478 832 574 202 278 167 0 chr11 35783572 35783662 -114999891 - MIR SINE MIR -69 193 89 492 257 88 61 chr11 35783771 35784032 -114999521 - L2 LINE L2 0 3313 3046 197 360 20 0 chr11 35785212 35785312 -114998241 + MIR3 SINE MIR 74 175 -33 306 258 43 0 chr11 35785712 35785805 -114997748 - MIR3 SINE MIR -3 205 109 2194 130 0 0 chr11 35785812 35786112 -114997441 + AluSx SINE Alu 1 300 -12 560 267 65 54 chr11 35787587 35787864 -114995689 - L1ME3A LINE L1 -207 5963 5684 475 283 107 6 chr11 35788385 35788562 -114994991 - MER91A DNA MER1_type 0 196 2 2202 90 42 0 chr11 35788593 35788881 -114994672 + AluY SINE Alu 1 300 -11 181 250 16 31 chr11 35789503 35789567 -114993986 + MIR SINE MIR 44 106 -102 796 277 34 47 chr11 35789571 35789806 -114993747 - MIR SINE MIR 0 262 31 2034 131 0 3 chr11 35789895 35790208 -114993345 + AluSx SINE Alu 1 312 0 445 200 117 8 chr11 35791563 35791683 -114991870 + MER117 DNA MER1_type 65 197 0 347 330 110 53 chr11 35792042 35792269 -114991284 - L2 LINE L2 -31 3241 3002 2045 144 6 34 chr11 35792793 35793147 -114990406 + MLT1A1 LTR MaLR 21 364 -1 6682 137 55 37 chr11 35793396 35794652 -114988901 - MER52C LTR ERV1 0 1278 1 386 225 208 17 chr11 35795151 35795271 -114988282 + MIR SINE MIR 118 260 -2 915 152 0 0 chr11 35795349 35795487 -114988066 + FRAM SINE Alu 1 138 -38 2042 91 0 17 chr11 35795697 35795984 -114987569 - AluSc SINE Alu -18 291 10 324 0 0 0 chr11 35799880 35799916 -114983637 + (CA)n Simple_repeat Simple_repeat 2 37 0 254 289 70 18 chr11 35801803 35801917 -114981636 + MIR SINE MIR 87 206 -56 1568 151 154 31 chr11 35803942 35804267 -114979286 + MLT1A1 LTR MaLR 1 365 0 15376 174 39 8 chr11 35805153 35811661 -114971892 - L1PB1 LINE L1 0 6867 1 421 267 60 9 chr11 35811775 35811891 -114971662 - L2 LINE L2 -1 3271 3150 205 270 40 40 chr11 35812725 35812799 -114970754 - L3 LINE CR1 0 1577 1504 320 226 129 11 chr11 35813191 35813284 -114970269 + MIR SINE MIR 39 142 -120 1624 163 37 17 chr11 35813847 35814141 -114969412 + AluJo SINE Alu 1 300 -12 227 354 31 16 chr11 35814508 35814635 -114968918 + MIR SINE MIR 132 260 -2 284 260 41 0 chr11 35815094 35815167 -114968386 + MIR SINE MIR 65 140 -68 1007 182 14 42 chr11 35815308 35815522 -114968031 - MER3 DNA MER1_type 0 209 2 1804 175 35 27 chr11 35815669 35816040 -114967513 + MLT1A2 LTR MaLR 1 374 0 309 280 91 23 chr11 35816480 35816612 -114966941 - MIR SINE MIR -19 243 103 225 260 0 0 chr11 35816627 35816677 -114966876 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 995 231 45 25 chr11 35816789 35817031 -114966522 - MIR SINE MIR -3 259 13 541 234 75 109 chr11 35817277 35817516 -114966037 - L2 LINE L2 -26 3246 3016 2493 169 83 9 chr11 35818456 35818923 -114964630 - LTR44 LTR ERV1 0 519 18 328 265 24 0 chr11 35819432 35819532 -114964021 - MIR SINE MIR -56 152 50 1380 160 98 21 chr11 35820015 35820302 -114963251 + AluJo SINE Alu 1 309 -3 1894 209 40 21 chr11 35820550 35820976 -114962577 + MER63B DNA MER1_type 3 436 0 395 181 0 75 chr11 35821555 35821581 -114961972 + LTR33 LTR ERVL 423 449 -72 1741 178 106 3 chr11 35821581 35821912 -114961641 - MLT1A1 LTR MaLR 0 365 1 395 181 0 75 chr11 35821912 35821979 -114961574 + LTR33 LTR ERVL 449 509 -12 744 326 30 4 chr11 35822055 35822291 -114961262 + MIR SINE MIR 21 262 0 364 163 165 3 chr11 35822299 35822402 -114961151 - L1MA9 LINE L1 -168 6132 6005 533 312 50 5 chr11 35823035 35823234 -114960319 + MIR SINE MIR 47 254 -8 472 220 220 43 chr11 35823619 35823874 -114959679 + Charlie8 DNA MER1_type 38 337 -2080 421 302 14 7 chr11 35823903 35824042 -114959511 + L2 LINE L2 1429 1568 -1746 652 189 14 42 chr11 35824045 35824188 -114959365 + MSTD LTR MaLR 1 139 -257 704 44 0 11 chr11 35824191 35824282 -114959271 + AluY SINE Alu 210 299 -12 602 193 79 13 chr11 35824336 35824527 -114959026 + MSTD LTR MaLR 169 396 0 2384 262 107 0 chr11 35824530 35825287 -114958266 + L2 LINE L2 1571 2408 -906 918 148 0 13 chr11 35825399 35825554 -114957999 - FRAM SINE Alu -24 152 1 979 249 168 20 chr11 35825582 35826178 -114957375 + L2 LINE L2 2611 3313 0 1874 123 3 64 chr11 35827073 35827399 -114956154 - AluSx SINE Alu -6 306 1 1109 198 33 16 chr11 35828833 35828959 -114954594 + AluJb SINE Alu 1 123 -189 261 0 0 0 chr11 35828959 35828988 -114954565 + (CA)n Simple_repeat Simple_repeat 2 30 0 1109 198 33 16 chr11 35828988 35829104 -114954449 + AluJb SINE Alu 123 247 -65 252 0 0 0 chr11 35830394 35830422 -114953131 + (TG)n Simple_repeat Simple_repeat 2 29 0 306 258 101 11 chr11 35830452 35830541 -114953012 + MIR SINE MIR 79 175 -87 1149 185 35 52 chr11 35830807 35831122 -114952431 + AluJo SINE Alu 1 310 0 577 174 122 111 chr11 35831125 35831413 -114952140 + MER34 LTR ERV1 252 542 0 407 268 197 28 chr11 35831422 35831635 -114951918 + MIR SINE MIR 12 260 -2 413 218 158 61 chr11 35832852 35833017 -114950536 + MIR SINE MIR 81 261 -1 606 241 186 10 chr11 35833169 35833368 -114950185 - MIR SINE MIR -1 261 28 243 295 9 67 chr11 35833707 35833812 -114949741 + MIR3 SINE MIR 1 99 -109 1244 176 59 64 chr11 35834115 35834437 -114949116 + MLT2B3 LTR ERVL 238 554 0 308 316 112 11 chr11 35835114 35835301 -114948252 - MIR SINE MIR -55 207 2 248 267 100 11 chr11 35835593 35835683 -114947870 + MIR SINE MIR 48 145 -117 454 259 61 42 chr11 35839247 35839359 -114944194 + L1MC/D LINE L1 5568 5676 -445 760 167 0 36 chr11 35839359 35839497 -114944056 - FLAM_C SINE Alu 0 133 1 454 259 61 42 chr11 35839497 35839636 -114943917 + L1MC/D LINE L1 5676 5825 -296 21 0 0 0 chr11 35839668 35839689 -114943864 + AT_rich Low_complexity Low_complexity 1 21 0 591 172 9 0 chr11 35839704 35839820 -114943733 + L1MB7 LINE L1 5126 5242 -904 741 172 0 0 chr11 35839826 35839942 -114943611 + FLAM_C SINE Alu 3 118 -25 2053 148 18 33 chr11 35839973 35840045 -114943508 + L1MB7 LINE L1 5257 5329 -855 1548 166 60 32 chr11 35840045 35840328 -114943225 + AluJo SINE Alu 1 291 -11 2053 148 18 33 chr11 35840328 35840653 -114942900 + L1MB7 LINE L1 5329 5648 -536 2350 193 26 8 chr11 35840934 35841438 -114942115 + L1MB7 LINE L1 5656 6168 -16 240 270 90 11 chr11 35842359 35842448 -114941105 - MIR SINE MIR 0 262 167 3974 136 77 9 chr11 35842810 35843575 -114939978 - Tigger3(Golem) DNA MER2_type -60 2969 2153 1008 128 0 0 chr11 35843576 35843717 -114939836 - AluSg/x SINE Alu -5 307 167 454 109 185 0 chr11 35843717 35843836 -114939717 - Tigger3(Golem) DNA MER2_type -879 2150 213 856 128 42 74 chr11 35843854 35843958 -114939595 - L1M2 LINE L1 -678 5619 5519 2227 135 0 0 chr11 35843958 35844269 -114939284 + AluSx SINE Alu 2 312 0 856 128 42 74 chr11 35844269 35844358 -114939195 - L1M2 LINE L1 -778 5519 5429 190 313 76 28 chr11 35845362 35845506 -114938047 + L2 LINE L2 2891 3041 -231 213 296 0 28 chr11 35845595 35845666 -114937887 + L2 LINE L2 3178 3246 -26 323 293 167 37 chr11 35845699 35845914 -114937639 + MIR SINE MIR 20 262 0 3292 148 36 26 chr11 35846219 35846840 -114936713 + Cheshire DNA MER1_type 1751 2381 -39 2266 112 0 0 chr11 35846840 35847136 -114936417 + AluSx SINE Alu 1 296 -16 3292 148 36 26 chr11 35847136 35847177 -114936376 + Cheshire DNA MER1_type 2381 2420 0 451 91 0 0 chr11 35847614 35847680 -114935873 + Cheshire DNA MER1_type 2036 2101 -319 1886 157 0 0 chr11 35847979 35848290 -114935263 + AluSx SINE Alu 1 311 0 313 253 0 71 chr11 35848291 35848390 -114935163 - MIR SINE MIR -55 153 62 535 269 41 14 chr11 35848836 35848981 -114934572 - MIR SINE MIR -106 156 8 1752 125 0 104 chr11 35849056 35849393 -114934160 + AluY SINE Alu 1 302 -9 25 31 0 0 chr11 35849755 35849787 -114933766 + AT_rich Low_complexity Low_complexity 1 32 0 361 249 121 30 chr11 35849901 35850066 -114933487 + MIR SINE MIR 83 262 0 780 262 47 11 chr11 35850335 35850565 -114932988 + MIR SINE MIR 2 232 -30 206 290 187 19 chr11 35851720 35851827 -114931726 - MIR3 SINE MIR -54 154 30 1248 156 0 45 chr11 35852542 35852766 -114930787 + AluJo SINE Alu 87 300 -12 311 277 21 64 chr11 35853680 35853821 -114929732 + L1ME4a LINE L1 5982 6116 -5 22876 70 20 13 chr11 35854475 35858318 -114925235 + L1PA7 LINE L1 2290 6154 0 3744 146 38 34 chr11 35858529 35858786 -114924767 + Tigger2 DNA MER2_type 1 255 -2463 1663 151 54 0 chr11 35858786 35859064 -114924489 + AluJb SINE Alu 1 293 -19 3744 146 38 34 chr11 35859064 35859562 -114923991 + Tigger2 DNA MER2_type 255 759 -1959 1544 150 4 0 chr11 35859617 35859871 -114923682 + Tigger2 DNA MER2_type 2464 2718 0 306 211 29 0 chr11 35859871 35859975 -114923578 + (TA)n Simple_repeat Simple_repeat 2 108 0 788 225 39 0 chr11 35860136 35860318 -114923235 - MER5A DNA MER1_type 0 189 1 2176 118 36 38 chr11 35860490 35860855 -114922698 + THE1B LTR MaLR 1 364 0 1896 139 109 5 chr11 35860855 35861222 -114922331 + MSTA LTR MaLR 24 428 0 247 309 18 65 chr11 35861236 35861404 -114922149 - MIR SINE MIR -5 257 98 1412 238 149 37 chr11 35861410 35861973 -114921580 + MLT1E2 LTR MaLR 1 626 0 2184 103 7 17 chr11 35861974 35862274 -114921279 + AluSx SINE Alu 1 297 -15 313 267 117 42 chr11 35862534 35862654 -114920899 - MIR3 SINE MIR -15 193 65 1740 80 4 4 chr11 35862966 35863203 -114920350 - L1PA10 LINE L1 -19 6149 5913 593 102 0 59 chr11 35864055 35864173 -114919380 - AluSp/q SINE Alu 0 313 203 2259 89 7 0 chr11 35864275 35864567 -114918986 + AluSg SINE Alu 1 294 -16 360 0 0 0 chr11 35865876 35865916 -114917637 + (CA)n Simple_repeat Simple_repeat 2 41 0 256 234 56 28 chr11 35865923 35866030 -114917523 + MER54A LTR ERVL 484 593 -308 242 174 72 58 chr11 35866035 35866104 -114917449 + FRAM SINE Alu 43 112 -54 787 119 35 7 chr11 35866107 35866250 -114917303 + MER54B LTR ERVL 643 789 -4 540 329 167 48 chr11 35866812 35867451 -114916102 + L2 LINE L2 1977 2691 -623 315 318 47 6 chr11 35867546 35867749 -114915804 + MLT1L LTR MaLR 313 479 -32 1851 144 24 0 chr11 35867965 35868257 -114915296 + AluSx SINE Alu 1 299 -13 1665 192 93 0 chr11 35868546 35868879 -114914674 + MLT1A1 LTR MaLR 2 365 0 2410 84 0 0 chr11 35868907 35869205 -114914348 + AluY SINE Alu 2 299 -12 234 128 0 0 chr11 35870657 35870696 -114912857 + (TCC)n Simple_repeat Simple_repeat 1 39 0 785 168 0 0 chr11 35870983 35871108 -114912445 - FLAM_A SINE Alu -8 125 1 25 0 0 0 chr11 35871416 35871441 -114912112 + AT_rich Low_complexity Low_complexity 1 25 0 508 251 124 81 chr11 35871441 35871851 -114911702 - MLT1G LTR MaLR -42 548 121 1052 272 92 24 chr11 35872162 35872598 -114910955 + L2 LINE L2 2774 3235 -78 680 185 32 53 chr11 35873401 35873590 -114909963 + Charlie1 DNA MER1_type 2577 2761 0 329 257 9 53 chr11 35873591 35873704 -114909849 + L1MEc LINE L1 632 739 -5657 3038 233 99 12 chr11 35873714 35874833 -114908720 + L1MEc LINE L1 2426 3642 -2573 335 247 113 75 chr11 35876014 35876156 -114907397 + L1ME4a LINE L1 5897 6049 -72 2113 135 0 0 chr11 35876156 35876453 -114907100 - AluSx SINE Alu -15 297 1 335 247 113 75 chr11 35876453 35876496 -114907057 + L1ME4a LINE L1 6049 6089 -32 21 0 0 0 chr11 35877214 35877235 -114906318 + AT_rich Low_complexity Low_complexity 1 21 0 1838 161 3 16 chr11 35878001 35878306 -114905247 - AluJo SINE Alu -11 301 1 207 246 29 0 chr11 35878571 35878640 -114904913 + (TA)n Simple_repeat Simple_repeat 2 72 0 181 375 0 0 chr11 35878753 35878809 -114904744 + L2 LINE L2 3250 3305 -8 21 0 0 0 chr11 35883031 35883052 -114900501 + AT_rich Low_complexity Low_complexity 1 21 0 2080 121 3 23 chr11 35883507 35883814 -114899739 - AluSx SINE Alu -11 301 1 1318 178 80 38 chr11 35885383 35885670 -114897883 - AluJo SINE Alu -13 299 1 937 140 104 133 chr11 35886011 35886088 -114897465 + AluJo SINE Alu 40 118 -194 300 27 0 0 chr11 35886088 35886125 -114897428 + (TAA)n Simple_repeat Simple_repeat 1 37 0 937 140 104 133 chr11 35886125 35886326 -114897227 + AluJo SINE Alu 118 310 -2 1366 224 14 3 chr11 35886331 35886617 -114896936 + AluJb SINE Alu 11 299 -13 23 0 0 0 chr11 35887560 35887583 -114895970 + AT_rich Low_complexity Low_complexity 1 23 0 893 288 81 32 chr11 35888365 35889084 -114894469 + L1MEc LINE L1 783 1565 -4831 1954 137 7 13 chr11 35889084 35889383 -114894170 + AluJo SINE Alu 1 297 -15 893 288 81 32 chr11 35889383 35889653 -114893900 + L1MEc LINE L1 1565 1820 -4576 404 269 24 12 chr11 35889668 35890259 -114893294 + L1MEc LINE L1 1880 2552 -3663 2815 166 94 25 chr11 35890310 35890917 -114892636 - MLT1E1 LTR MaLR -5 649 1 374 266 40 40 chr11 35890922 35891099 -114892454 + L1MEc LINE L1 2610 2786 -3429 5077 234 70 29 chr11 35891202 35893310 -114890243 + L1MEc LINE L1 2775 6210 -29 2191 155 31 75 chr11 35893327 35893529 -114890024 + L1MD3 LINE L1 7497 7706 -289 2048 123 40 7 chr11 35893529 35893830 -114889723 + AluSx SINE Alu 2 312 0 2191 155 31 75 chr11 35893830 35894149 -114889404 + L1MD3 LINE L1 7706 7995 0 478 295 45 19 chr11 35894394 35894441 -114889112 + MIR SINE MIR 28 72 -190 2732 130 36 7 chr11 35894441 35894857 -114888696 + MSTA LTR MaLR 1 428 0 478 295 45 19 chr11 35894857 35894965 -114888588 + MIR SINE MIR 72 187 -75 370 309 72 26 chr11 35895054 35895162 -114888391 + MIR3 SINE MIR 36 154 -54 1236 209 5 5 chr11 35895162 35895382 -114888171 + MER58A DNA MER1_type 4 223 -1 370 309 72 26 chr11 35895382 35895425 -114888128 + MIR3 SINE MIR 154 194 -14 240 111 0 0 chr11 35895825 35895861 -114887692 + (A)n Simple_repeat Simple_repeat 1 36 0 469 279 72 58 chr11 35896050 35896130 -114887423 + MIR SINE MIR 17 94 -168 2490 46 0 0 chr11 35896130 35896438 -114887115 - AluY SINE Alu 0 308 1 469 279 72 58 chr11 35896438 35896564 -114886989 + MIR SINE MIR 94 227 -35 207 324 40 27 chr11 35897115 35897189 -114886364 + MIR SINE MIR 1 75 -187 231 279 98 25 chr11 35898555 35898677 -114884876 - L2 LINE L2 -819 2495 2365 180 0 0 0 chr11 35898694 35898714 -114884839 + (T)n Simple_repeat Simple_repeat 1 20 0 277 246 215 26 chr11 35898744 35898939 -114884614 - HAL1 LINE L1 0 2507 2276 405 323 94 23 chr11 35899252 35899559 -114883994 - L2 LINE L2 -994 2320 1992 22 35 0 0 chr11 35900095 35900124 -114883429 + AT_rich Low_complexity Low_complexity 1 29 0 297 242 0 88 chr11 35900784 35900875 -114882678 - MER5B DNA MER1_type -76 102 20 328 275 185 51 chr11 35901187 35901648 -114881905 + L2 LINE L2 2715 3248 -24 221 279 104 60 chr11 35901876 35902077 -114881476 - L2 LINE L2 -423 2891 2682 208 113 38 57 chr11 35903363 35903416 -114880137 + C-rich Low_complexity Low_complexity 2 53 0 1132 162 21 30 chr11 35905165 35905399 -114878154 - MER96B DNA MER1_type? 0 417 186 1988 148 7 0 chr11 35905437 35905728 -114877825 - AluSq SINE Alu -20 293 1 1632 169 30 20 chr11 35906244 35906539 -114877014 + AluJb SINE Alu 1 298 -14 794 204 0 0 chr11 35908445 35908577 -114874976 - FLAM_A SINE Alu -1 132 1 769 258 96 82 chr11 35908604 35909081 -114874472 + LTR33 LTR ERVL 36 519 -2 1860 246 32 41 chr11 35910218 35910686 -114872867 - LTR16B LTR ERVL 0 464 1 2221 137 73 6 chr11 35911321 35911663 -114871890 + MLT1A1 LTR MaLR 1 365 0 441 259 146 33 chr11 35911664 35911876 -114871677 - LTR50 LTR ERVL -165 630 395 378 108 0 0 chr11 35911936 35912001 -114871552 + (CA)n Simple_repeat Simple_repeat 1 65 0 2121 124 0 7 chr11 35912608 35912906 -114870647 - AluSx SINE Alu -16 296 1 529 226 0 15 chr11 35913705 35913838 -114869715 + L1PB4 LINE L1 4882 5012 -1134 367 103 0 29 chr11 35913874 35913942 -114869611 + (GAAAA)n Simple_repeat Simple_repeat 4 69 0 266 170 0 0 chr11 35913942 35913995 -114869558 + L1PB4 LINE L1 5002 5054 -1092 218 105 26 0 chr11 35914012 35914050 -114869503 + GA-rich Low_complexity Low_complexity 2 40 0 549 203 41 0 chr11 35914051 35914174 -114869379 + L1PB4 LINE L1 5040 5167 -979 1060 107 0 0 chr11 35914197 35914356 -114869197 + L1PB4 LINE L1 5151 5309 -837 274 114 0 0 chr11 35914374 35914418 -114869135 + LOR1a LTR ERV1 240 283 -214 812 135 23 0 chr11 35914502 35914635 -114868918 + FLAM_C SINE Alu 1 136 -7 463 171 0 0 chr11 35914648 35914718 -114868835 + AluJ/FRAM SINE Alu 228 297 -15 233 118 0 0 chr11 35914761 35914795 -114868758 + L1PB4 LINE L1 5317 5350 -796 21 0 0 0 chr11 35915069 35915090 -114868463 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr11 35915127 35915150 -114868403 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1248 154 68 14 chr11 35915252 35915472 -114868081 + L1PB4 LINE L1 5922 6153 -3 38 0 0 0 chr11 35915493 35915531 -114868022 + AT_rich Low_complexity Low_complexity 1 38 0 2987 78 18 13 chr11 35917059 35917457 -114866096 + L1PA8 LINE L1 5771 6170 -2 2292 123 0 0 chr11 35917757 35918067 -114865486 + AluSx SINE Alu 1 310 -2 394 288 89 29 chr11 35918134 35918415 -114865138 - L1ME4a LINE L1 -262 5859 5562 264 250 37 93 chr11 35918466 35918734 -114864819 + L1M4 LINE L1 2788 3040 -3106 195 129 0 0 chr11 35918883 35918914 -114864639 + (TG)n Simple_repeat Simple_repeat 1 31 0 212 329 18 114 chr11 35918954 35919182 -114864371 - L2 LINE L2 -110 3162 2957 210 71 0 0 chr11 35920182 35920210 -114863343 + (T)n Simple_repeat Simple_repeat 1 28 0 425 304 70 6 chr11 35920241 35920399 -114863154 + MIR3 SINE MIR 35 202 -6 2783 122 49 5 chr11 35920769 35921179 -114862374 + MSTA LTR MaLR 1 428 0 202 352 63 42 chr11 35921462 35921604 -114861949 - MIR3 SINE MIR -61 147 3 808 158 81 54 chr11 35921706 35921831 -114861722 + L1M4 LINE L1 4622 4757 -1389 2150 120 0 38 chr11 35921831 35922147 -114861406 + AluSx SINE Alu 1 304 -8 808 158 81 54 chr11 35922147 35922242 -114861311 + L1M4 LINE L1 4757 4848 -1298 1003 221 94 22 chr11 35922315 35922582 -114860971 - L1ME1 LINE L1 -5 6161 5876 * 1566 276 50 42 chr11 35922575 35922864 -114860689 + L1M4 LINE L1 4032 4317 -1829 1993 138 7 17 chr11 35922864 35923162 -114860391 + AluSx SINE Alu 1 295 -17 1566 276 50 42 chr11 35923162 35923766 -114859787 + L1M4 LINE L1 4317 4932 -1214 * 2836 200 54 16 chr11 35923756 35924516 -114859037 + L1MDa LINE L1 2438 3220 -3320 5124 127 12 38 chr11 35924518 35924660 -114858893 + L1MA2 LINE L1 4935 5079 -1225 1958 138 0 45 chr11 35924660 35924972 -114858581 - AluJb SINE Alu -14 298 1 5124 127 12 38 chr11 35924972 35925982 -114857571 + L1MA2 LINE L1 5079 6055 -249 727 224 89 4 chr11 35925978 35926259 -114857294 + L1MDa LINE L1 3445 3749 -2791 * 1156 72 0 0 chr11 35926259 35926397 -114857156 + AluY SINE Alu 1 138 -173 225 69 0 0 chr11 35926398 35926427 -114857126 + Alu SINE Alu 239 267 -35 6415 181 44 90 chr11 35926427 35927895 -114855658 + L1MB7 LINE L1 3742 5277 -1301 642 119 20 0 chr11 35927895 35927996 -114855557 + L1PB2 LINE L1 6048 6150 -1 6415 181 44 90 chr11 35927996 35928570 -114854983 + L1MB7 LINE L1 5277 5876 -702 1462 185 64 20 chr11 35928570 35928868 -114854685 + AluJo SINE Alu 1 311 -1 6415 181 44 90 chr11 35928868 35929667 -114853886 + L1MB7 LINE L1 5876 6447 -131 2362 82 7 3 chr11 35929667 35929972 -114853581 + AluSq SINE Alu 1 306 -7 6415 181 44 90 chr11 35929972 35930057 -114853496 + L1MB7 LINE L1 6447 6534 -44 2823 186 73 30 chr11 35930262 35930903 -114852650 - LTR65 LTR ERV1 0 669 1 794 104 26 17 chr11 35932558 35932673 -114850880 + FLAM_C SINE Alu 1 116 -17 240 163 0 0 chr11 35932965 35933008 -114850545 + (TAA)n Simple_repeat Simple_repeat 3 45 0 282 250 109 0 chr11 35933167 35933259 -114850294 - L2 LINE L2 -6 3307 3206 210 262 48 39 chr11 35933386 35933489 -114850064 + MIR3 SINE MIR 96 199 -9 324 0 0 0 chr11 35933736 35933772 -114849781 + (CA)n Simple_repeat Simple_repeat 2 37 0 426 214 20 20 chr11 35934473 35934571 -114848982 - MER5A DNA MER1_type -83 106 9 977 154 6 0 chr11 35934857 35935013 -114848540 - AluJo SINE Alu 0 312 156 967 156 6 24 chr11 35935059 35935226 -114848327 - AluJo SINE Alu -148 164 1 372 272 117 99 chr11 35935420 35935703 -114847850 - L2 LINE L2 0 3272 2985 242 274 48 60 chr11 35936235 35936319 -114847234 - MIR SINE MIR -83 125 43 1966 133 14 111 chr11 35936453 35936875 -114846678 - LOR1b LTR ERV1 0 461 81 2253 83 3 10 chr11 35987271 35987572 -114795981 + AluSx SINE Alu 1 299 -13 1594 176 0 41 chr11 35988109 35988255 -114795298 + AluJo SINE Alu 1 151 -161 1895 152 0 0 chr11 35988255 35988551 -114795002 + AluSx SINE Alu 1 296 -16 1594 176 0 41 chr11 35988551 35988723 -114794830 + AluJo SINE Alu 151 306 -6 27 0 0 0 chr11 35989234 35989261 -114794292 + AT_rich Low_complexity Low_complexity 1 27 0 2171 85 0 0 chr11 35989684 35989967 -114793586 + AluSx SINE Alu 13 295 -17 377 127 16 32 chr11 35990128 35990191 -114793362 - MIR SINE MIR -82 180 119 581 228 39 8 chr11 35990193 35990320 -114793233 + MER63 DNA MER1_type 4 760 -302 361 252 10 68 chr11 35990530 35990633 -114792920 - MIR SINE MIR -155 107 11 2150 113 0 0 chr11 35990874 35991197 -114792356 - AluSx SINE Alu 0 312 1 2171 113 0 0 chr11 35991450 35991750 -114791803 - AluSx SINE Alu -12 300 1 413 154 287 49 chr11 35992053 35992196 -114791357 - MER69A DNA AcHobo 0 177 1 2377 90 0 0 chr11 35992577 35992876 -114790677 + AluSq SINE Alu 3 301 -12 586 288 118 0 chr11 35992922 35993134 -114790419 + MER112 DNA MER1_type 17 253 -7 250 277 0 0 chr11 35993565 35993612 -114789941 + L2 LINE L2 3134 3180 -92 275 283 151 0 chr11 35993660 35993766 -114789787 - MIR SINE MIR -95 167 46 249 194 11 32 chr11 35994323 35994416 -114789137 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 1896 137 10 10 chr11 35994489 35994782 -114788771 + AluSx SINE Alu 1 293 -19 2655 35 0 10 chr11 35994783 35995095 -114788458 + AluY SINE Alu 1 309 -2 2297 76 36 3 chr11 35995459 35995761 -114787792 + AluSx SINE Alu 1 312 0 576 245 95 40 chr11 35995917 35996117 -114787436 + MIR SINE MIR 16 226 -36 293 293 42 61 chr11 35996138 35996350 -114787203 + L1ME3 LINE L1 5745 5952 -210 306 0 0 0 chr11 35996354 35996388 -114787165 + (TC)n Simple_repeat Simple_repeat 2 35 0 * 315 0 0 0 chr11 35996387 35996422 -114787131 + (TA)n Simple_repeat Simple_repeat 1 35 0 2192 125 3 0 chr11 35996422 35996727 -114786826 - AluSx SINE Alu 0 312 7 214 163 47 0 chr11 35996761 35996804 -114786749 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 345 189 0 27 chr11 35996804 35996878 -114786675 - L1PA15 LINE L1 0 6165 6094 997 103 35 14 chr11 35997788 35997933 -114785620 + THE1B LTR MaLR 1 148 -216 1456 171 17 38 chr11 35997958 35998245 -114785308 + AluJo SINE Alu 18 298 -14 2276 75 4 4 chr11 35998365 35998645 -114784908 - AluSg SINE Alu -30 280 1 525 293 83 15 chr11 35998648 35998853 -114784700 - MIR SINE MIR -7 255 37 2668 36 0 0 chr11 35999287 35999588 -114783965 + AluY SINE Alu 1 301 -10 240 35 0 0 chr11 36000084 36000113 -114783440 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1945 101 0 4 chr11 36000117 36000375 -114783178 - AluSg SINE Alu -28 282 26 31 88 0 0 chr11 36000991 36001071 -114782482 + AT_rich Low_complexity Low_complexity 1 80 0 326 301 90 38 chr11 36001345 36001478 -114782075 + L2 LINE L2 3161 3300 -13 306 0 0 0 chr11 36001478 36001512 -114782041 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 511 228 44 44 chr11 36002395 36002553 -114781000 - MIR SINE MIR -56 206 49 2179 107 0 22 chr11 36002768 36003086 -114780467 - AluSx SINE Alu -1 311 1 2176 95 17 14 chr11 36003224 36003518 -114780035 + AluSq SINE Alu 1 295 -18 216 0 0 0 chr11 36003796 36003820 -114779733 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 329 183 150 100 chr11 36003923 36004043 -114779510 - MER94 DNA DNA -1 133 8 205 338 45 20 chr11 36004089 36004287 -114779266 + L2 LINE L2 1681 1883 -1431 502 125 0 50 chr11 36004352 36004432 -114779121 - AluJb SINE Alu -151 161 86 180 272 226 23 chr11 36004446 36004663 -114778890 + L2 LINE L2 1983 2243 -1071 1215 208 45 150 chr11 36004673 36004867 -114778686 - L2 LINE L2 0 3313 3100 2131 103 0 0 chr11 36004867 36005140 -114778413 + AluSg SINE Alu 1 273 -37 180 0 0 0 chr11 36005144 36005164 -114778389 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1215 208 45 150 chr11 36005164 36005662 -114777891 - L2 LINE L2 -216 3097 2691 790 240 180 31 chr11 36005662 36006014 -114777539 - LTR16A LTR ERVL 0 450 47 608 234 83 102 chr11 36006176 36006276 -114777277 + L2 LINE L2 2651 2751 -563 2211 117 13 0 chr11 36006276 36006584 -114776969 + AluSx SINE Alu 1 312 0 608 234 83 102 chr11 36006584 36006748 -114776805 + L2 LINE L2 2751 2910 -404 831 154 0 0 chr11 36007172 36007295 -114776258 + FLAM_C SINE Alu 1 123 -20 2191 95 7 0 chr11 36007634 36007930 -114775623 - AluSp SINE Alu -15 298 1 1776 120 75 0 chr11 36008519 36008785 -114774768 + AluSx SINE Alu 14 299 -13 252 245 19 47 chr11 36008985 36009091 -114774462 + L1P LINE L1 4910 5012 -1134 22 70 0 0 chr11 36009147 36009190 -114774363 + AT_rich Low_complexity Low_complexity 1 43 0 303 267 56 11 chr11 36009259 36009349 -114774204 + L1ME4a LINE L1 5320 5413 -708 497 215 180 31 chr11 36009478 36009706 -114773847 + L1ME4a LINE L1 5653 5914 -207 27 0 0 0 chr11 36010006 36010033 -114773520 + AT_rich Low_complexity Low_complexity 1 27 0 360 152 136 0 chr11 36010160 36010226 -114773327 - MER2 DNA MER2_type -1 344 270 1052 172 30 0 chr11 36010280 36010449 -114773104 - MER2 DNA MER2_type -171 174 1 1929 138 7 0 chr11 36010673 36010949 -114772604 - AluJo SINE Alu -13 299 22 537 250 62 67 chr11 36011292 36011516 -114772037 + L2 LINE L2 3085 3307 -6 2342 96 0 0 chr11 36011684 36011987 -114771566 - AluSx SINE Alu -2 310 8 240 130 0 22 chr11 36011991 36012037 -114771516 + MLT1K LTR MaLR 514 558 -30 197 43 0 0 chr11 36012094 36012117 -114771436 + (A)n Simple_repeat Simple_repeat 1 23 0 2309 85 0 7 chr11 36012121 36012428 -114771125 + AluSx SINE Alu 1 305 -7 315 317 122 72 chr11 36013020 36013628 -114769925 - L1M2 LINE L1 -5551 1298 661 701 123 38 0 chr11 36015371 36015477 -114768076 - L1PA8 LINE L1 -13 6159 6050 2272 87 0 0 chr11 36015498 36015785 -114767768 + AluSq SINE Alu 1 287 -26 797 235 125 28 chr11 36016166 36016455 -114767098 - L2 LINE L2 -5 3308 2992 402 235 217 0 chr11 36016940 36017055 -114766498 + MIR SINE MIR 110 249 -13 1841 132 45 0 chr11 36017313 36017600 -114765953 - AluSx SINE Alu -12 300 1 2626 145 214 20 chr11 36017708 36018254 -114765299 + MER39B LTR ERV1 1 652 -1 228 270 149 0 chr11 36018308 36018382 -114765171 + L2 LINE L2 3229 3313 0 729 266 100 64 chr11 36018401 36018935 -114764618 - L1ME3A LINE L1 -60 6110 5533 2252 101 0 23 chr11 36018935 36019243 -114764310 - AluSg SINE Alu -8 302 2 729 266 100 64 chr11 36019243 36019456 -114764097 - L1ME3A LINE L1 -637 5533 5329 498 257 193 9 chr11 36020833 36020958 -114762595 + MIR SINE MIR 3 104 -158 2128 100 10 3 chr11 36020958 36021257 -114762296 + AluSg SINE Alu 1 301 -9 498 257 193 9 chr11 36021257 36021349 -114762204 + MIR SINE MIR 104 260 -2 21 36 0 0 chr11 36021365 36021393 -114762160 + AT_rich Low_complexity Low_complexity 1 28 0 2403 74 3 0 chr11 36021475 36021771 -114761782 - AluSp SINE Alu -16 297 1 26 0 0 0 chr11 36022238 36022264 -114761289 + AT_rich Low_complexity Low_complexity 1 26 0 649 272 105 3 chr11 36022459 36022685 -114760868 - MIR SINE MIR -17 245 3 412 186 85 47 chr11 36022746 36022875 -114760678 + L1ME4a LINE L1 5942 6075 -46 896 202 0 23 chr11 36023172 36023345 -114760208 + AluJb SINE Alu 129 297 -15 2357 92 7 0 chr11 36024014 36024308 -114759245 - AluSx SINE Alu -16 296 1 1561 268 141 16 chr11 36024457 36025287 -114758266 + L2 LINE L2 2369 3311 -2 506 315 155 59 chr11 36026143 36026304 -114757249 - L2 LINE L2 -815 2499 2355 4014 185 66 22 chr11 36026304 36027195 -114756358 + MER63C DNA MER1_type 1 930 0 506 315 155 59 chr11 36027195 36027276 -114756277 - L2 LINE L2 -959 2355 2283 2185 129 0 0 chr11 36027276 36027570 -114755983 + AluSx SINE Alu 3 296 -16 506 315 155 59 chr11 36027570 36028041 -114755512 - L2 LINE L2 -1031 2283 1716 1541 186 16 29 chr11 36028718 36029030 -114754523 - AluJo SINE Alu 0 312 5 2226 123 0 7 chr11 36029084 36029394 -114754159 - AluSg SINE Alu -2 308 1 1394 167 61 19 chr11 36029753 36030017 -114753536 + AluJo SINE Alu 31 305 -7 584 220 145 6 chr11 36030230 36030389 -114753164 + MIR SINE MIR 40 220 -42 2249 97 28 0 chr11 36030619 36030909 -114752644 - AluSq SINE Alu -15 298 1 1407 128 20 0 chr11 36031692 36031896 -114751657 - AluJb SINE Alu -18 294 87 310 237 140 11 chr11 36031962 36032055 -114751498 + Charlie7 DNA MER1_type 2506 2610 -2 1662 149 82 3 chr11 36032199 36032481 -114751072 + AluJb SINE Alu 1 304 -8 514 254 81 48 chr11 36032522 36032731 -114750822 + MIR SINE MIR 13 228 -34 1060 117 0 155 chr11 36034125 36034338 -114749215 - AluSx SINE Alu -132 180 1 1299 210 84 54 chr11 36034338 36034930 -114748623 - L1ME LINE L1 -4860 1220 628 819 176 14 0 chr11 36034953 36035095 -114748458 - FRAM SINE Alu -13 163 20 1828 246 71 57 chr11 36035104 36035722 -114747831 - L1ME LINE L1 -5443 627 1 1770 159 10 17 chr11 36036151 36036446 -114747107 + AluJb SINE Alu 1 293 -19 2272 112 3 6 chr11 36036859 36037172 -114746381 - AluSx SINE Alu 0 312 1 257 233 33 17 chr11 36038765 36038825 -114744728 + MER66A LTR ERV1 277 337 -141 617 262 188 41 chr11 36038995 36039357 -114744196 - L1ME4a LINE L1 -205 5916 5502 2058 112 14 0 chr11 36039444 36039731 -114743822 + AluSg SINE Alu 1 291 -19 470 250 37 37 chr11 36039803 36039967 -114743586 + MIR SINE MIR 98 261 -1 1039 170 32 46 chr11 36040012 36040230 -114743323 + MER20 DNA MER1_type 1 215 -4 674 256 118 0 chr11 36040394 36040605 -114742948 + L1MC4 LINE L1 7807 8042 0 1613 168 26 23 chr11 36040742 36040920 -114742633 - AluJo SINE Alu -2 310 129 2182 130 3 3 chr11 36040920 36041227 -114742326 - AluSx SINE Alu -5 307 1 1613 168 26 23 chr11 36041227 36041357 -114742196 - AluJo SINE Alu -183 129 1 2125 98 0 14 chr11 36041359 36041669 -114741884 - AluY SINE Alu 0 306 1 23 54 0 0 chr11 36041762 36041799 -114741754 + AT_rich Low_complexity Low_complexity 1 37 0 735 141 22 37 chr11 36041806 36041941 -114741612 + AluJb SINE Alu 2 134 -178 432 168 56 56 chr11 36041970 36042095 -114741458 + L1ME4a LINE L1 5997 6121 0 2313 85 3 26 chr11 36042498 36042805 -114740748 + AluSc SINE Alu 1 300 -9 2203 106 0 3 chr11 36043036 36043319 -114740234 - AluSq SINE Alu -31 282 1 238 320 0 13 chr11 36043319 36043365 -114740188 - AluSp SINE Alu -168 135 91 383 305 103 11 chr11 36044145 36044319 -114739234 + L2 LINE L2 2155 2344 -970 26 0 0 0 chr11 36044601 36044627 -114738926 + AT_rich Low_complexity Low_complexity 1 26 0 2294 98 0 19 chr11 36044652 36044959 -114738594 + AluSg SINE Alu 9 309 -1 453 298 104 27 chr11 36045183 36045482 -114738071 - L2 LINE L2 -2 3311 2990 21 0 0 0 chr11 36045871 36045892 -114737661 + AT_rich Low_complexity Low_complexity 1 21 0 2089 127 0 10 chr11 36045894 36046193 -114737360 + AluSx SINE Alu 1 296 -16 723 284 88 45 chr11 36046290 36046776 -114736777 + L1ME4a LINE L1 5520 6026 -95 937 149 98 0 chr11 36047253 36047427 -114736126 - AluJb SINE Alu -1 311 121 1992 147 0 3 chr11 36047530 36047829 -114735724 + AluSx SINE Alu 10 307 -5 2075 136 0 28 chr11 36047858 36048175 -114735378 + AluSx SINE Alu 1 308 -4 275 282 160 38 chr11 36048510 36048641 -114734912 - L2 LINE L2 -2 3270 3124 2459 64 3 0 chr11 36048969 36049267 -114734286 + AluSc SINE Alu 1 299 -10 2304 104 0 0 chr11 36049638 36049927 -114733626 + AluSq SINE Alu 1 289 -24 2318 85 17 0 chr11 36049938 36050233 -114733320 + AluSq SINE Alu 1 300 -13 2054 126 0 3 chr11 36050337 36050650 -114732903 - AluY SINE Alu 0 312 1 1650 165 40 7 chr11 36051062 36051334 -114732219 + AluJo SINE Alu 1 281 -31 966 77 0 0 chr11 36051348 36051465 -114732088 + AluSq/x SINE Alu 1 117 -196 189 132 0 0 chr11 36051471 36051509 -114732044 + (A)n Simple_repeat Simple_repeat 1 38 0 3346 185 78 14 chr11 36052190 36052930 -114730623 - L1MB7 LINE L1 -41 6143 5356 1381 180 0 4 chr11 36052931 36053159 -114730394 - AluJb SINE Alu 0 312 86 403 168 10 10 chr11 36053211 36053312 -114730241 + GA-rich Low_complexity Low_complexity 3 103 0 3880 171 151 67 chr11 36053320 36053852 -114729701 - L1MB7 LINE L1 -774 5372 4886 2331 86 13 7 chr11 36053852 36054156 -114729397 + AluSg SINE Alu 1 306 -4 3880 171 151 67 chr11 36054156 36054341 -114729212 - L1MB7 LINE L1 -1260 4886 4718 4390 61 44 10 chr11 36054341 36054928 -114728625 - L1PB1 LINE L1 -7 6144 5538 3880 171 151 67 chr11 36054928 36055409 -114728144 - L1MB7 LINE L1 -1428 4718 4072 1817 166 58 0 chr11 36055569 36055895 -114727658 - MER47A DNA MER2_type 0 366 22 2474 87 0 3 chr11 36055903 36056213 -114727340 + AluSg SINE Alu 1 309 -1 401 212 71 0 chr11 36056329 36056414 -114727139 + MER5A DNA MER1_type 61 151 -38 328 194 71 20 chr11 36056330 36056428 -114727125 - MER5A DNA MER1_type -50 139 37 * 1793 170 0 41 chr11 36056834 36057151 -114726402 + AluJo SINE Alu 1 304 -8 229 211 0 0 chr11 36057214 36057266 -114726287 + T-rich Low_complexity Low_complexity 1 52 0 1914 123 3 91 chr11 36057277 36057619 -114725934 + AluSx SINE Alu 1 312 0 2440 90 3 0 chr11 36057633 36057934 -114725619 + AluSx SINE Alu 2 303 -9 1812 174 0 13 chr11 36058079 36058384 -114725169 - AluJo SINE Alu -11 301 1 594 266 129 46 chr11 36058400 36058808 -114724745 - L1ME3A LINE L1 -220 5950 5507 500 237 0 0 chr11 36059224 36059317 -114724236 - FLAM_A SINE Alu -45 97 5 2116 112 14 10 chr11 36059529 36059825 -114723728 + AluSx SINE Alu 11 307 -5 234 0 0 0 chr11 36060583 36060609 -114722944 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 494 141 0 0 chr11 36060623 36060694 -114722859 - AluJ/FLAM SINE Alu -240 72 2 1543 172 48 7 chr11 36062310 36062583 -114720970 + AluJo SINE Alu 1 284 -28 23 0 0 0 chr11 36062583 36062606 -114720947 + AT_rich Low_complexity Low_complexity 1 23 0 2239 100 0 3 chr11 36062989 36063278 -114720275 + AluSq SINE Alu 9 296 -17 878 152 0 0 chr11 36063587 36063725 -114719828 + FLAM_C SINE Alu 6 143 0 1849 136 35 3 chr11 36063974 36064260 -114719293 + AluSx SINE Alu 1 295 -17 1408 136 30 30 chr11 36064690 36064867 -114718686 - MER46A DNA MER2_type -2495 236 57 2037 115 0 30 chr11 36064867 36065172 -114718381 + AluJb SINE Alu 1 296 -16 1408 136 30 30 chr11 36065172 36065230 -114718323 - MER46A DNA MER2_type -2673 58 1 2050 71 0 8 chr11 36065447 36065699 -114717854 + AluY SINE Alu 42 291 -20 501 263 98 87 chr11 36066106 36066544 -114717009 - L1MEd LINE L1 -5284 835 393 569 277 121 9 chr11 36066817 36067048 -114716505 + MIR SINE MIR 6 262 0 1662 72 36 84 chr11 36069477 36069727 -114713826 - AluSg SINE Alu -10 300 63 815 161 15 96 chr11 36070030 36070086 -114713467 - MER5A DNA MER1_type -6 183 124 1867 165 3 0 chr11 36070086 36070383 -114713170 + AluJb SINE Alu 5 302 -10 815 161 15 96 chr11 36070383 36070525 -114713028 - MER5A DNA MER1_type -65 124 1 21 0 0 0 chr11 36070724 36070745 -114712808 + AT_rich Low_complexity Low_complexity 1 21 0 645 214 10 85 chr11 36073332 36073410 -114710143 + MER5A DNA MER1_type 1 83 -106 1999 133 0 31 chr11 36073410 36073732 -114709821 + AluJb SINE Alu 1 312 0 645 214 10 85 chr11 36073732 36073854 -114709699 + MER5A DNA MER1_type 83 186 -3 387 331 19 0 chr11 36074746 36074903 -114708650 + MIR3 SINE MIR 43 202 -6 596 264 31 0 chr11 36074971 36075134 -114708419 - LTR16A1 LTR ERVL 0 457 290 22 35 0 0 chr11 36075725 36075754 -114707799 + AT_rich Low_complexity Low_complexity 1 29 0 717 278 21 0 chr11 36076813 36077004 -114706549 - MIR SINE MIR -48 214 20 1747 158 43 4 chr11 36079285 36079563 -114703990 + AluJb SINE Alu 1 289 -23 1442 119 0 5 chr11 36079576 36079777 -114703776 - AluSq SINE Alu -11 302 103 249 33 0 0 chr11 36082414 36082444 -114701109 + (CCG)n Simple_repeat Simple_repeat 3 32 0 31 26 0 0 chr11 36082556 36082594 -114700959 + GC_rich Low_complexity Low_complexity 1 38 0 207 100 0 0 chr11 36082992 36083022 -114700531 + (T)n Simple_repeat Simple_repeat 1 30 0 369 0 0 0 chr11 36084134 36084175 -114699378 + (TG)n Simple_repeat Simple_repeat 2 42 0 1685 128 114 29 chr11 36084242 36084523 -114699030 + AluJo SINE Alu 1 305 -7 291 292 42 10 chr11 36084705 36084801 -114698752 + MIR SINE MIR 12 110 -152 486 205 64 70 chr11 36084824 36084914 -114698639 + MIR SINE MIR 31 122 -140 2150 74 0 87 chr11 36084914 36085252 -114698301 + AluSx SINE Alu 1 311 0 486 205 64 70 chr11 36085252 36085331 -114698222 + MIR SINE MIR 122 200 -62 2306 95 0 7 chr11 36085689 36085995 -114697558 - AluSx SINE Alu -8 304 1 353 256 0 0 chr11 36087267 36087349 -114696204 + MIR SINE MIR 64 145 -117 464 299 11 17 chr11 36088022 36088196 -114695357 + MIR SINE MIR 86 258 -4 2308 112 0 0 chr11 36088228 36088532 -114695021 + AluSq SINE Alu 1 304 -9 1170 260 68 44 chr11 36088842 36089363 -114694190 + L2 LINE L2 2776 3311 -2 660 306 57 4 chr11 36089663 36089911 -114693642 + MIR SINE MIR 2 262 0 2270 122 0 0 chr11 36090393 36090697 -114692856 - AluSx SINE Alu -4 308 5 219 270 144 45 chr11 36090971 36091082 -114692471 + MIR3 SINE MIR 87 208 0 507 314 92 4 chr11 36091311 36091550 -114692003 + MIR SINE MIR 3 262 0 2720 176 22 24 chr11 36092027 36092283 -114691270 + L1MB3 LINE L1 5016 5271 -912 1802 95 29 47 chr11 36092283 36092557 -114690996 + AluSx SINE Alu 1 269 -43 2720 176 22 24 chr11 36092557 36093087 -114690466 + L1MB3 LINE L1 5271 5795 -388 373 106 0 71 chr11 36093089 36093202 -114690351 + (TA)n Simple_repeat Simple_repeat 1 105 0 1748 180 54 11 chr11 36093206 36093579 -114689974 + L1MB3 LINE L1 5782 6170 -13 207 114 0 0 chr11 36094671 36094706 -114688847 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 775 259 98 13 chr11 36095557 36095793 -114687760 - MIR SINE MIR 0 262 7 420 278 102 40 chr11 36095875 36096051 -114687502 + L2 LINE L2 3034 3220 -93 411 307 53 13 chr11 36096128 36096278 -114687275 + MER117 DNA MER1_type 40 195 -2 184 261 0 62 chr11 36096494 36096559 -114686994 - L2 LINE L2 -214 3058 2998 * 491 308 59 14 chr11 36096556 36096777 -114686776 - MIR SINE MIR -15 247 17 2186 101 0 7 chr11 36098774 36099071 -114684482 - AluSq SINE Alu -18 295 1 1714 161 34 7 chr11 36100434 36100598 -114682955 - AluJb SINE Alu -12 300 123 199 53 26 26 chr11 36100598 36100636 -114682917 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 1714 161 34 7 chr11 36100636 36100763 -114682790 - AluJb SINE Alu -189 123 1 1049 252 131 24 chr11 36101199 36101767 -114681786 + L2 LINE L2 2685 3313 0 405 304 96 0 chr11 36101765 36101900 -114681653 - MIR SINE MIR -95 167 20 * 220 274 86 68 chr11 36101911 36102028 -114681525 - L2 LINE L2 -850 2464 2346 428 274 49 0 chr11 36102080 36102182 -114681371 - L2 LINE L2 -25 3247 3141 238 297 110 17 chr11 36102293 36102411 -114681142 - L2 LINE L2 -3 3269 3141 385 317 16 0 chr11 36102430 36102553 -114681000 - L2 LINE L2 -1 3312 3188 3237 126 46 15 chr11 36102554 36103100 -114680453 + L1PB4 LINE L1 5507 6069 -87 433 248 0 0 chr11 36103129 36103230 -114680323 + L1PB4 LINE L1 6043 6143 -13 2046 124 10 0 chr11 36103235 36103541 -114680012 - AluSx SINE Alu -3 309 1 349 198 168 10 chr11 36103638 36103739 -114679814 - MIR SINE MIR -29 233 117 306 317 19 0 chr11 36103908 36104012 -114679541 + MIR SINE MIR 151 256 -6 423 38 0 0 chr11 36104236 36104289 -114679264 + (CA)n Simple_repeat Simple_repeat 2 54 0 473 319 31 12 chr11 36105371 36105534 -114678019 + MIR SINE MIR 47 212 -50 278 284 15 0 chr11 36106262 36106329 -114677224 + L2 LINE L2 3186 3253 -19 180 281 105 0 chr11 36107703 36107760 -114675793 - L2 LINE L2 -524 2790 2728 1938 125 7 7 chr11 36108041 36108344 -114675209 - AluSq SINE Alu -10 303 1 433 231 218 0 chr11 36108372 36108528 -114675025 + MIR SINE MIR 48 237 -25 21 0 0 0 chr11 36108570 36108591 -114674962 + AT_rich Low_complexity Low_complexity 1 21 0 283 133 44 0 chr11 36109264 36109309 -114674244 - L2 LINE L2 0 3272 3226 261 178 0 0 chr11 36109538 36109583 -114673970 + MIR3 SINE MIR 129 173 -35 961 175 13 61 chr11 36109886 36110114 -114673439 - AluJo SINE Alu -11 301 85 346 233 160 20 chr11 36110228 36110378 -114673175 + MIR3 SINE MIR 26 196 -12 653 261 14 21 chr11 36110916 36111058 -114672495 - MER91A DNA MER1_type 0 196 56 1029 123 19 95 chr11 36111159 36111288 -114672265 - MER3 DNA MER1_type 0 209 101 2189 113 0 0 chr11 36111288 36111598 -114671955 + AluSx SINE Alu 1 310 -2 1029 123 19 95 chr11 36111598 36111679 -114671874 - MER3 DNA MER1_type -108 101 15 290 282 94 79 chr11 36111841 36112118 -114671435 + L2 LINE L2 2935 3215 -57 321 301 55 20 chr11 36112310 36112456 -114671097 - MIR SINE MIR -89 173 23 576 309 5 48 chr11 36113809 36114016 -114669537 + MIR SINE MIR 2 199 -63 2008 120 0 16 chr11 36114237 36114553 -114669000 + AluSx SINE Alu 1 311 -1 538 291 27 7 chr11 36114890 36115038 -114668515 + MLT1K LTR MaLR 69 219 -369 839 229 68 44 chr11 36115051 36115300 -114668253 + MLT1K LTR MaLR 330 584 -4 542 15 15 0 chr11 36115611 36115678 -114667875 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 698 319 75 12 chr11 36115889 36116234 -114667319 - MLT1J1 LTR MaLR 0 446 80 820 147 89 13 chr11 36116238 36116395 -114667158 + FRAM SINE Alu 1 168 -8 412 204 11 34 chr11 36116397 36116485 -114667068 - MLT1J1 LTR MaLR -360 86 1 198 118 0 0 chr11 36118095 36118129 -114665424 + (TG)n Simple_repeat Simple_repeat 1 34 0 515 286 54 0 chr11 36118361 36118508 -114665045 - L2 LINE L2 -1 3312 3158 2540 97 102 10 chr11 36118527 36118918 -114664635 + MSTA LTR MaLR 1 427 -1 416 269 25 17 chr11 36118922 36119041 -114664512 - L2 LINE L2 -7 3306 3187 323 268 73 49 chr11 36120048 36120212 -114663341 - MIR SINE MIR -56 206 39 698 224 64 65 chr11 36120315 36120561 -114662992 + MIR SINE MIR 2 241 -21 266 261 254 29 chr11 36120641 36120948 -114662605 - L1ME4a LINE L1 -39 6082 5707 2093 109 3 0 chr11 36120948 36121242 -114662311 + AluSq SINE Alu 13 307 -6 30 0 0 0 chr11 36121246 36121276 -114662277 + AT_rich Low_complexity Low_complexity 1 30 0 302 125 0 0 chr11 36121276 36121316 -114662237 - Alu SINE Alu -259 40 1 594 267 35 23 chr11 36121317 36121489 -114662064 + L1ME3A LINE L1 5478 5651 -511 1408 213 54 30 chr11 36121494 36121677 -114661876 - MER58B DNA MER1_type -2079 341 145 1831 144 0 29 chr11 36121677 36121990 -114661563 - AluJb SINE Alu -8 304 1 1408 213 54 30 chr11 36121990 36122139 -114661414 - MER58B DNA MER1_type -2275 145 1 573 274 51 29 chr11 36122152 36122327 -114661226 + MER5A DNA MER1_type 9 187 -2 486 224 60 101 chr11 36122346 36122577 -114660976 + L1ME3A LINE L1 5665 5854 -310 1451 159 4 12 chr11 36122577 36122829 -114660724 + AluJo SINE Alu 42 291 -21 486 224 60 101 chr11 36122829 36122917 -114660636 + L1ME3A LINE L1 5854 5944 -220 601 224 54 54 chr11 36122981 36123186 -114660367 + L1ME3A LINE L1 5965 6169 -1 609 242 174 11 chr11 36123931 36124121 -114659432 + MLT1J LTR MaLR 22 242 -269 1565 166 69 0 chr11 36124197 36124474 -114659079 - AluJb SINE Alu -16 296 1 231 36 0 0 chr11 36124494 36124522 -114659031 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 359 230 0 0 chr11 36124522 36124596 -114658957 + MLT1J LTR MaLR 438 511 0 225 254 0 0 chr11 36124608 36124663 -114658890 + L1ME4a LINE L1 5718 5772 -349 337 272 52 108 chr11 36124677 36124909 -114658644 - L2 LINE L2 0 3313 3095 183 315 27 0 chr11 36125010 36125083 -114658470 + L2 LINE L2 3239 3313 0 315 205 0 13 chr11 36125102 36125180 -114658373 + L1ME4a LINE L1 6044 6120 -1 249 169 17 34 chr11 36126038 36126097 -114657456 - MIR SINE MIR -89 173 116 2012 191 54 54 chr11 36126248 36126294 -114657259 + MLT1D LTR MaLR 1 46 -459 2412 53 0 7 chr11 36126294 36126594 -114656959 + AluY SINE Alu 1 298 -13 2012 191 54 54 chr11 36126594 36127051 -114656502 + MLT1D LTR MaLR 45 504 -1 1656 171 0 16 chr11 36127354 36127658 -114655895 + AluJb SINE Alu 2 300 -12 293 231 10 106 chr11 36127861 36127899 -114655654 + MIR SINE MIR 168 208 -54 2151 112 0 6 chr11 36127899 36128212 -114655341 + AluSx SINE Alu 1 311 -1 293 231 10 106 chr11 36128212 36128277 -114655276 + MIR SINE MIR 208 261 -1 637 186 211 0 chr11 36128348 36128504 -114655049 - MER5A DNA MER1_type 0 189 1 483 190 13 0 chr11 36128533 36128612 -114654941 + L2 LINE L2 3234 3313 0 738 233 116 23 chr11 36130135 36130245 -114653308 + MIR SINE MIR 28 126 -136 2616 87 34 14 chr11 36130245 36130602 -114652951 + THE1B LTR MaLR 1 364 0 738 233 116 23 chr11 36130602 36130706 -114652847 + MIR SINE MIR 126 262 0 291 345 118 0 chr11 36130781 36130891 -114652662 - MIR3 SINE MIR -15 193 71 551 243 38 47 chr11 36131345 36131550 -114652003 - L1MC5 LINE L1 -48 7913 7709 1982 96 10 10 chr11 36131550 36131841 -114651712 - AluSg SINE Alu -19 291 1 551 243 38 47 chr11 36131841 36131870 -114651683 - L1MC5 LINE L1 -252 7709 7681 2135 120 0 0 chr11 36131872 36132173 -114651380 + AluSx SINE Alu 1 301 -11 393 215 82 6 chr11 36132278 36132436 -114651117 - L1ME4a LINE L1 -239 5882 5713 766 260 62 121 chr11 36132460 36132990 -114650563 + MLT1J LTR MaLR 9 507 -4 227 295 38 95 chr11 36133009 36133219 -114650334 + L2 LINE L2 3116 3313 0 199 359 0 0 chr11 36133238 36133302 -114650251 + MIR SINE MIR 83 146 -62 209 296 56 28 chr11 36133421 36133529 -114650024 - L2 LINE L2 -376 2938 2828 1968 147 0 0 chr11 36133552 36133845 -114649708 - AluJb SINE Alu -19 293 1 272 264 161 0 chr11 36133891 36133978 -114649575 + MIR SINE MIR 162 262 0 2984 151 9 52 chr11 36134333 36134387 -114649166 + L1MB5 LINE L1 5391 5446 -728 1788 149 12 16 chr11 36134387 36134709 -114648844 + L1MC1 LINE L1 6013 6333 0 1841 50 12 8 chr11 36134709 36134966 -114648587 + L1PA7 LINE L1 5896 6157 0 2984 151 9 52 chr11 36134966 36135574 -114647979 + L1MB5 LINE L1 5444 5994 -180 1684 180 25 0 chr11 36135822 36136138 -114647415 + MER33 DNA MER1_type 1 324 0 446 234 0 57 chr11 36137668 36137809 -114645744 - MIR3 SINE MIR -30 178 46 1828 220 149 31 chr11 36138461 36138687 -114644866 + MLT1G LTR MaLR 12 210 -380 2053 108 21 0 chr11 36138687 36138974 -114644579 + AluSx SINE Alu 1 293 -19 1828 220 149 31 chr11 36138974 36139265 -114644288 + MLT1G LTR MaLR 210 590 0 229 167 62 0 chr11 36139613 36139661 -114643892 - MLT1K LTR MaLR -11 577 527 852 281 74 53 chr11 36140071 36140501 -114643052 - MLT1H LTR MaLR -110 439 1 834 239 73 36 chr11 36140611 36140858 -114642695 + MIR SINE MIR 7 262 0 520 286 113 0 chr11 36141094 36141307 -114642246 + L1ME4a LINE L1 5657 5893 -228 1823 219 82 108 chr11 36141516 36141840 -114641713 + L1ME3A LINE L1 5374 5705 -465 1567 174 25 0 chr11 36141840 36142115 -114641438 + AluJo SINE Alu 1 282 -30 216 0 0 0 chr11 36142118 36142142 -114641411 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1823 219 82 108 chr11 36142142 36142557 -114640996 + L1ME3A LINE L1 5707 6097 -73 1908 123 36 0 chr11 36142557 36142858 -114640695 + AluSq SINE Alu 1 312 -1 1823 219 82 108 chr11 36142858 36142926 -114640627 + L1ME3A LINE L1 6097 6165 -5 3293 103 63 64 chr11 36144709 36145292 -114638261 - LTR10A LTR ERV1 -2 631 1 338 373 19 19 chr11 36146098 36146259 -114637294 - L2 LINE L2 -2 3270 3110 21 36 0 0 chr11 36146461 36146489 -114637064 + AT_rich Low_complexity Low_complexity 1 28 0 219 260 91 13 chr11 36146491 36146568 -114636985 - L3b LINE CR1 -290 1293 1211 259 319 14 0 chr11 36147876 36147948 -114635605 - L2 LINE L2 -56 3216 3144 284 355 81 0 chr11 36148066 36148190 -114635363 + MIR3 SINE MIR 33 166 -42 1173 249 46 18 chr11 36148193 36148582 -114634971 - LTR16B LTR ERVL -3 461 62 332 326 62 8 chr11 36149068 36149197 -114634356 + MIR SINE MIR 32 167 -95 1266 151 16 69 chr11 36149199 36149477 -114634076 + AluJb SINE Alu 64 312 0 314 266 0 88 chr11 36149477 36149590 -114633963 + MIR SINE MIR 158 260 -2 183 302 5 111 chr11 36149936 36150125 -114633428 - L2 LINE L2 -439 2875 2707 183 42 0 0 chr11 36150851 36150875 -114632678 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1638 183 4 4 chr11 36150879 36151158 -114632395 - AluJb SINE Alu -33 279 1 932 218 30 42 chr11 36151308 36151570 -114631983 - MIR SINE MIR -1 261 3 289 278 175 0 chr11 36151665 36151762 -114631791 + L2 LINE L2 3155 3268 -4 1366 169 81 153 chr11 36152002 36152477 -114631076 + MLT1D LTR MaLR 1 435 -70 2205 99 0 0 chr11 36152477 36152783 -114630770 - AluSq SINE Alu 0 306 1 1366 169 81 153 chr11 36152783 36152850 -114630703 + MLT1D LTR MaLR 435 505 0 184 282 0 0 chr11 36152865 36152904 -114630649 - L2 LINE L2 -77 3236 3198 761 248 52 17 chr11 36153081 36153311 -114630242 - MIR SINE MIR -17 245 8 2033 122 7 0 chr11 36153572 36153876 -114629677 + AluSx SINE Alu 3 308 0 590 239 149 11 chr11 36154196 36154384 -114629169 - MIR SINE MIR -26 236 23 1822 156 13 19 chr11 36155236 36155543 -114628010 + AluJo SINE Alu 1 305 -7 2266 108 0 0 chr11 36156293 36156590 -114626963 - AluSx SINE Alu -14 298 2 797 144 7 62 chr11 36156591 36156737 -114626816 - FLAM_C SINE Alu -2 141 4 563 269 127 5 chr11 36156850 36157047 -114626506 + MIR SINE MIR 42 262 0 527 375 18 13 chr11 36157176 36157400 -114626153 - L3 LINE CR1 -133 1444 1220 456 104 0 0 chr11 36158146 36158213 -114625340 + (TCCA)n Simple_repeat Simple_repeat 4 70 0 507 204 14 63 chr11 36158215 36158357 -114625196 - L2 LINE L2 -4 3268 3134 233 258 0 32 chr11 36158554 36158616 -114624937 + L2 LINE L2 3254 3313 0 295 272 136 19 chr11 36159264 36159367 -114624186 - MIR SINE MIR -5 257 143 2630 40 0 0 chr11 36159391 36159689 -114623864 - AluYa5 SINE Alu -13 298 1 1081 197 25 29 chr11 36159693 36159932 -114623621 + MLT2B1 LTR ERVL 8 245 -169 486 0 0 0 chr11 36160019 36160073 -114623480 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 2100 85 46 0 chr11 36160666 36160949 -114622604 - AluSg SINE Alu -13 297 2 1804 108 8 8 chr11 36161054 36161312 -114622241 - L1PA13 LINE L1 -5 6158 5901 233 174 0 0 chr11 36161366 36161412 -114622141 - LTR66 LTR ERVL -161 449 404 309 51 0 0 chr11 36161551 36161590 -114621963 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1110 248 45 99 chr11 36161594 36162136 -114621417 - L2 LINE L2 -8 3305 2798 737 316 88 17 chr11 36162738 36163234 -114620319 - L2 LINE L2 -11 3302 2771 314 256 68 8 chr11 36163365 36163482 -114620071 - MIR SINE MIR -75 187 64 2381 154 77 23 chr11 36163549 36163641 -114619912 + L1M4 LINE L1 3370 3456 -2690 2070 138 7 0 chr11 36163641 36163945 -114619608 + AluSx SINE Alu 1 306 -6 2381 154 77 23 chr11 36163945 36164332 -114619221 + L1M4 LINE L1 3456 3875 -2271 24 53 0 0 chr11 36164562 36164600 -114618953 + AT_rich Low_complexity Low_complexity 1 38 0 564 163 22 0 chr11 36164889 36164981 -114618572 - AluJo SINE Alu -176 136 43 235 224 0 0 chr11 36165705 36165754 -114617799 + Alu SINE Alu 250 298 -3 1018 253 48 11 chr11 36165783 36165873 -114617680 + L1M4 LINE L1 4957 5042 -1104 1732 191 0 9 chr11 36165873 36166188 -114617365 + AluJo SINE Alu 1 312 0 1018 253 48 11 chr11 36166188 36166449 -114617104 + L1M4 LINE L1 5042 5321 -825 953 143 77 3 chr11 36166943 36167128 -114616425 - THE1C LTR MaLR -208 167 1 254 158 0 0 chr11 36167132 36167170 -114616383 + LTR39 LTR ERV1 739 776 -7 1778 235 82 67 chr11 36167230 36167899 -114615654 + LTR8A LTR ERV1 34 712 -15 1123 135 18 42 chr11 36168242 36168428 -114615125 + MLT1B LTR MaLR 1 176 -198 1293 208 47 11 chr11 36168428 36168702 -114614851 + AluSq SINE Alu 1 284 -19 1123 135 18 42 chr11 36168702 36168741 -114614812 + MLT1B LTR MaLR 176 214 -160 259 270 0 0 chr11 36168752 36168815 -114614738 + MLT1B LTR MaLR 170 232 -158 21 0 0 0 chr11 36169688 36169709 -114613844 + AT_rich Low_complexity Low_complexity 1 21 0 300 221 0 0 chr11 36170552 36170629 -114612924 + (CA)n Simple_repeat Simple_repeat 2 78 0 1295 112 103 28 chr11 36171898 36172112 -114611441 + MER30 DNA MER1_type 1 230 0 258 263 40 112 chr11 36172364 36172516 -114611037 - LTR8A LTR ERV1 -16 711 571 353 289 169 20 chr11 36173082 36173283 -114610270 - L2 LINE L2 0 3313 3083 353 331 159 26 chr11 36173303 36173454 -114610099 - MER5A DNA MER1_type -6 183 13 440 283 136 29 chr11 36173460 36173728 -114609825 - L2 LINE L2 -275 3038 2740 314 241 8 65 chr11 36173735 36173776 -114609777 - MLT2D LTR ERVL 0 414 414 438 101 0 0 chr11 36173776 36173845 -114609708 + (TG)n Simple_repeat Simple_repeat 2 70 0 314 241 8 65 chr11 36173845 36173914 -114609639 - MLT2D LTR ERVL 0 414 343 7605 143 8 45 chr11 36174578 36176008 -114607545 + L1P LINE L1 907 2284 -3862 2184 112 0 3 chr11 36176172 36176458 -114607095 - AluSx SINE Alu -27 285 1 307 324 65 7 chr11 36176809 36176948 -114606605 + L2 LINE L2 3167 3313 0 2164 187 65 47 chr11 36177059 36177658 -114605895 + LTR39 LTR ERV1 1 610 -173 240 140 0 20 chr11 36177797 36177847 -114605706 + L1MA8 LINE L1 6236 6284 -7 253 316 32 0 chr11 36179936 36180031 -114603522 - MIR SINE MIR -57 151 54 22 0 0 0 chr11 36182507 36182529 -114601024 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr11 36182562 36182598 -114600955 + (GA)n Simple_repeat Simple_repeat 1 36 0 1431 219 11 0 chr11 36182599 36182873 -114600680 - AluJo SINE Alu -35 277 1 704 154 62 8 chr11 36183074 36183204 -114600349 - LTR8 LTR ERV1 -554 137 1 23 0 0 0 chr11 36183810 36183833 -114599720 + AT_rich Low_complexity Low_complexity 1 23 0 283 279 57 33 chr11 36184196 36184318 -114599235 + MIR SINE MIR 111 235 -27 4570 206 75 11 chr11 36184553 36185623 -114597930 - L1M2 LINE L1 -4499 2350 1213 247 343 39 39 chr11 36185928 36186030 -114597523 - L2 LINE L2 -23 3249 3148 204 319 199 0 chr11 36186177 36186318 -114597235 - L2 LINE L2 -300 2972 2804 2496 177 33 2 chr11 36186347 36186766 -114596787 + MSTB1 LTR MaLR 1 432 0 272 287 105 14 chr11 36187411 36187554 -114595999 + L1MC/D LINE L1 5625 5780 -2028 8744 74 5 3 chr11 36188603 36189761 -114593792 + L1P LINE L1 3620 4779 -1367 1484 119 0 0 chr11 36189866 36190068 -114593485 - AluSq SINE Alu -111 202 1 185 353 84 17 chr11 36190507 36190626 -114592927 - L2 LINE L2 -23 3249 3123 443 215 0 89 chr11 36190646 36190701 -114592852 + L1ME LINE L1 5435 5493 -677 1851 157 0 0 chr11 36190701 36190981 -114592572 + AluJb SINE Alu 1 280 -32 200 83 0 28 chr11 36190984 36191020 -114592533 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 443 215 0 89 chr11 36191020 36191095 -114592458 + L1ME LINE L1 5495 5557 -613 478 239 0 43 chr11 36191102 36191286 -114592267 + AluJo SINE Alu 1 176 -136 227 79 26 0 chr11 36191370 36191408 -114592145 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 1286 147 147 0 chr11 36193904 36194122 -114589431 + Tigger3(Golem) DNA MER2_type 2779 3028 -1 539 211 204 0 chr11 36194135 36194277 -114589276 + L1MB4 LINE L1 5477 5647 -533 2104 173 82 2 chr11 36194279 36194695 -114588858 - Tigger2 DNA MER2_type -3 2715 2267 469 132 15 0 chr11 36194680 36194748 -114588805 - Tigger2 DNA MER2_type -2649 69 1 * 2664 174 13 2 chr11 36194754 36195231 -114588322 + L1MB4 LINE L1 5651 6132 -48 9116 71 0 14 chr11 36195370 36196546 -114587007 - L1P LINE L1 -4930 1216 58 1955 92 19 45 chr11 36196704 36196988 -114586565 + L1PA7 LINE L1 5841 6118 -36 2287 79 7 16 chr11 36196988 36197292 -114586261 - AluY SINE Alu -9 302 2 1955 92 19 45 chr11 36197292 36197321 -114586232 + L1PA7 LINE L1 6118 6146 -8 24 0 0 0 chr11 36197645 36197669 -114585884 + AT_rich Low_complexity Low_complexity 1 24 0 3667 34 0 5 chr11 36197767 36198208 -114585345 - L1PA5 LINE L1 -8 6146 5708 1205 287 71 5 chr11 36198342 36198750 -114584803 - Zaphod DNA AcHobo -3552 479 45 688 275 110 14 chr11 36198868 36199086 -114584467 - MER69 DNA AcHobo -744 482 244 1059 268 76 5 chr11 36199227 36199780 -114583773 + MER69 DNA AcHobo 1461 2052 -474 25 90 0 0 chr11 36199833 36199900 -114583653 + AT_rich Low_complexity Low_complexity 1 67 0 1720 144 26 0 chr11 36200700 36201013 -114582540 + L1MA9 LINE L1 5991 6311 -1 324 210 116 80 chr11 36201078 36201216 -114582337 - L1ME LINE L1 -302 5819 5677 460 327 145 35 chr11 36201302 36201620 -114581933 - L2 LINE L2 0 3272 2920 265 392 26 10 chr11 36201787 36201981 -114581572 - L2 LINE L2 -632 2682 2486 544 368 135 18 chr11 36201990 36202666 -114580887 - L2 LINE L2 -1442 1872 1118 231 271 102 17 chr11 36202795 36202913 -114580640 - L2 LINE L2 -1218 2096 1969 534 272 235 14 chr11 36203214 36203427 -114580126 + MIR SINE MIR 3 262 0 697 197 8 0 chr11 36203610 36203732 -114579821 + FLAM_C SINE Alu 1 123 -20 25 31 0 0 chr11 36203732 36203764 -114579789 + AT_rich Low_complexity Low_complexity 1 32 0 895 211 19 31 chr11 36204630 36204891 -114578662 - MER2 DNA MER2_type -81 264 7 243 338 186 14 chr11 36205201 36205346 -114578207 + L2 LINE L2 3097 3266 -6 25 31 0 0 chr11 36205818 36205850 -114577703 + AT_rich Low_complexity Low_complexity 1 32 0 241 282 0 0 chr11 36206656 36206727 -114576826 - L1P5 LINE L1 -577 5577 5507 231 203 0 0 chr11 36208391 36208455 -114575098 + CT-rich Low_complexity Low_complexity 1 64 0 1562 199 11 4 chr11 36208571 36208842 -114574711 + AluJo SINE Alu 3 275 -37 261 75 0 0 chr11 36208842 36208882 -114574671 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 333 62 0 0 chr11 36209027 36209075 -114574478 + (C)n Simple_repeat Simple_repeat 1 48 0 1119 268 24 0 chr11 36209293 36209632 -114573921 + L1 LINE L1 3911 4257 -1889 1189 235 46 26 chr11 36209704 36210125 -114573428 + MER66A LTR ERV1 164 478 0 806 226 92 14 chr11 36210126 36210494 -114573059 + L1 LINE L1 4295 4691 -1455 9040 48 3 1 chr11 36210622 36211813 -114571740 + L1P LINE L1 1455 2648 -3498 254 365 31 13 chr11 36211914 36212073 -114571480 + L2 LINE L2 2897 3058 -214 252 0 0 0 chr11 36212306 36212334 -114571219 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1575 172 20 7 chr11 36212714 36213011 -114570542 + L1P3 LINE L1 10 310 -6151 805 134 76 6 chr11 36213996 36214153 -114569400 + Tigger3(Golem) DNA MER2_type 2588 2755 -274 1342 90 0 48 chr11 36214210 36214398 -114569155 - AluSq SINE Alu -134 179 1 276 189 0 0 chr11 36214398 36214451 -114569102 + AluSg/x SINE Alu 187 239 -61 1868 129 0 0 chr11 36214457 36214743 -114568810 + Tigger3(Golem) DNA MER2_type 2743 3028 -1 540 252 130 0 chr11 36214864 36214995 -114568558 - MIR SINE MIR -72 190 43 354 273 0 0 chr11 36215701 36215778 -114567775 + L2 LINE L2 3231 3307 -6 862 28 9 0 chr11 36216214 36216322 -114567231 - L1P2 LINE L1 -419 5736 5628 4382 157 38 45 chr11 36216350 36217444 -114566109 - L1MA6 LINE L1 -145 6155 5057 939 191 5 5 chr11 36217444 36217633 -114565920 + L1MA6 LINE L1 4887 5075 -1071 316 175 31 15 chr11 36217627 36217771 -114565782 - L1P LINE L1 -832 5314 5168 * 6950 57 10 0 chr11 36218009 36219764 -114563789 + L1PA6 LINE L1 4379 6152 -2 258 32 0 0 chr11 36221501 36221532 -114562021 + (TA)n Simple_repeat Simple_repeat 1 31 0 2246 98 7 3 chr11 36221642 36221937 -114561616 - AluSg SINE Alu -14 296 1 458 274 37 56 chr11 36222437 36222652 -114560901 - MIR SINE MIR 0 262 52 452 175 10 10 chr11 36222946 36223043 -114560510 + MSTB1 LTR MaLR 7 103 -329 2020 111 14 17 chr11 36223469 36223766 -114559787 + AluSq SINE Alu 1 296 -17 841 172 6 56 chr11 36223768 36223948 -114559605 + AluSg/x SINE Alu 135 305 -5 1794 114 54 14 chr11 36224390 36224670 -114558883 + AluSc SINE Alu 2 292 -17 553 290 84 35 chr11 36224679 36224965 -114558588 - MLT1I LTR MaLR -91 318 19 1584 73 23 0 chr11 36225900 36226120 -114557433 + L1PA7 LINE L1 5778 6002 -152 231 91 0 0 chr11 36226260 36226293 -114557260 + L1PA7 LINE L1 6097 6129 -25 2240 95 7 13 chr11 36226293 36226599 -114556954 - AluSq SINE Alu -9 304 1 234 170 0 21 chr11 36226600 36226647 -114556906 + MLT1I LTR MaLR 363 408 -1 21 57 0 0 chr11 36227091 36227126 -114556427 + AT_rich Low_complexity Low_complexity 1 35 0 1925 162 28 7 chr11 36227214 36227531 -114556022 + AluJb SINE Alu 1 312 0 317 207 0 0 chr11 36227730 36227788 -114555765 - MLT1H1 LTR MaLR -2 553 496 207 0 0 0 chr11 36227788 36227811 -114555742 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 257 136 0 23 chr11 36227811 36227855 -114555698 - Alu SINE Alu -19 283 241 207 0 0 0 chr11 36228977 36229000 -114554553 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 23 54 0 0 chr11 36229151 36229188 -114554365 + AT_rich Low_complexity Low_complexity 1 37 0 279 335 81 6 chr11 36229211 36229372 -114554181 + MIR SINE MIR 66 238 -24 2342 66 10 3 chr11 36229966 36230268 -114553285 + AluY SINE Alu 8 311 0 180 250 0 0 chr11 36230961 36231005 -114552548 - MIR SINE MIR 0 262 219 1828 160 7 3 chr11 36231017 36231310 -114552243 - AluJb SINE Alu 0 312 19 23353 50 11 11 chr11 36231442 36234693 -114548860 + L1P LINE L1 2131 5380 -766 879 237 290 5 chr11 36236469 36236910 -114546643 - L2 LINE L2 -4 3309 2748 260 270 0 16 chr11 36237090 36237153 -114546400 + MER5A DNA MER1_type 128 189 0 410 249 61 61 chr11 36237180 36237345 -114546208 + MER58B DNA MER1_type 177 341 0 1342 90 0 48 chr11 36237361 36237549 -114546004 + AluSq SINE Alu 1 179 -134 1172 73 90 0 chr11 36237608 36237785 -114545768 - Tigger3(Golem) DNA MER2_type -276 2753 2561 624 138 0 37 chr11 36237788 36237897 -114545656 + AluJb SINE Alu 1 105 -207 189 0 0 0 chr11 36238379 36238400 -114545153 + (CA)n Simple_repeat Simple_repeat 2 22 0 247 175 0 50 chr11 36239418 36239498 -114544055 - L1MA10 LINE L1 -3 6331 6256 1606 208 76 37 chr11 36239520 36240163 -114543390 - L1M4 LINE L1 -1197 4949 4282 331 239 61 35 chr11 36240192 36240389 -114543164 - Tigger4(Zombi) DNA MER2_type -1 2730 2529 1089 273 38 14 chr11 36240531 36240901 -114542652 + MLT1E2 LTR MaLR 247 625 -1 1866 137 3 20 chr11 36242385 36242677 -114540876 - AluSq SINE Alu -26 287 1 192 241 165 25 chr11 36242690 36242769 -114540784 - MIR3 SINE MIR -21 187 98 2325 93 0 3 chr11 36242803 36243094 -114540459 - AluSx SINE Alu -22 290 1 2268 99 0 13 chr11 36243928 36244231 -114539322 - AluSx SINE Alu -13 299 1 2106 126 8 14 chr11 36244380 36244737 -114538816 - L1MA8 LINE L1 0 6291 5937 339 285 84 107 chr11 36245126 36245424 -114538129 + L2 LINE L2 2682 2972 -342 212 152 43 0 chr11 36245730 36245776 -114537777 + (TATG)n Simple_repeat Simple_repeat 4 51 0 2274 86 0 0 chr11 36246404 36246696 -114536857 + AluYa5 SINE Alu 7 298 -13 295 267 139 20 chr11 36246720 36246821 -114536732 + MIR SINE MIR 143 255 -7 248 254 17 0 chr11 36247476 36247535 -114536018 - L2 LINE L2 0 3313 3254 520 233 7 55 chr11 36247737 36247883 -114535670 + L2 LINE L2 3134 3272 0 474 90 0 0 chr11 36247870 36247952 -114535601 + (TGGA)n Simple_repeat Simple_repeat 1 82 0 * 549 375 18 13 chr11 36248698 36248922 -114534631 + L3 LINE CR1 1220 1444 -133 592 269 127 5 chr11 36249051 36249248 -114534305 - MIR SINE MIR 0 262 42 1651 51 182 12 chr11 36249358 36249611 -114533942 + AluY SINE Alu 1 296 -15 914 136 45 0 chr11 36249612 36249766 -114533787 - LTR41 LTR ERVL -612 161 1 28 0 0 0 chr11 36249885 36249913 -114533640 + AT_rich Low_complexity Low_complexity 1 28 0 591 275 140 0 chr11 36250125 36250303 -114533250 + MIR SINE MIR 20 222 -40 353 289 104 7 chr11 36250834 36250969 -114532584 - MIR3 SINE MIR -11 197 50 2121 85 7 0 chr11 36251000 36251282 -114532271 + AluSg SINE Alu 1 284 -26 323 351 108 52 chr11 36251829 36252401 -114531152 - L3 LINE CR1 -727 850 247 6275 165 14 12 chr11 36252947 36254078 -114529475 + Tigger4(Zombi) DNA MER2_type 705 1837 -894 1611 191 0 92 chr11 36254704 36255129 -114528424 - MLT1B LTR MaLR -4 386 1 185 355 0 13 chr11 36255199 36255275 -114528278 - L3 LINE CR1 -7 1570 1496 815 169 59 131 chr11 36255634 36255870 -114527683 + MER20 DNA MER1_type 1 219 0 2260 100 0 0 chr11 36255902 36256202 -114527351 + AluSx SINE Alu 1 300 -12 2195 100 0 10 chr11 36256296 36256596 -114526957 + AluSx SINE Alu 6 302 -10 186 171 0 0 chr11 36256633 36256674 -114526879 + GA-rich Low_complexity Low_complexity 1 41 0 228 35 0 0 chr11 36256701 36256730 -114526823 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 289 320 90 28 chr11 36257331 36257509 -114526044 + MER5A DNA MER1_type 1 189 0 387 257 50 29 chr11 36257894 36258034 -114525519 - MER5A DNA MER1_type -26 163 21 1825 127 48 0 chr11 36258088 36258380 -114525173 + AluSq SINE Alu 1 306 -7 2195 108 0 0 chr11 36258439 36258744 -114524809 + AluSq SINE Alu 1 305 -8 28 29 0 0 chr11 36259081 36259116 -114524437 + AT_rich Low_complexity Low_complexity 1 35 0 2841 163 28 26 chr11 36259214 36259692 -114523861 - L1MB7 LINE L1 -8 6176 5695 1941 111 180 45 chr11 36259692 36260027 -114523526 + MSTA LTR MaLR 1 394 -34 2091 99 3 14 chr11 36260027 36260321 -114523232 - AluSc SINE Alu -18 291 1 1941 111 180 45 chr11 36260321 36260362 -114523191 + MSTA LTR MaLR 394 428 0 2841 163 28 26 chr11 36260362 36260460 -114523093 - L1MB7 LINE L1 -489 5695 5599 2011 125 0 10 chr11 36260462 36260767 -114522786 - AluSg SINE Alu -8 302 1 2139 101 3 3 chr11 36260946 36261244 -114522309 + AluSp SINE Alu 1 298 -15 751 283 69 8 chr11 36261865 36262112 -114521441 - MIR SINE MIR 0 262 1 300 374 93 22 chr11 36262134 36262273 -114521280 + MIR SINE MIR 23 171 -91 786 138 17 0 chr11 36262432 36262548 -114521005 + FLAM_C SINE Alu 2 119 -24 32 35 0 18 chr11 36262548 36262582 -114520971 + AT_rich Low_complexity Low_complexity 1 35 -21 1909 147 0 0 chr11 36262582 36262868 -114520685 - AluSx SINE Alu -24 288 3 32 35 0 18 chr11 36262868 36262890 -114520663 + AT_rich Low_complexity Low_complexity 35 56 0 921 138 0 0 chr11 36263158 36263288 -114520265 + FLAM_C SINE Alu 1 130 -3 940 301 172 30 chr11 36263702 36263912 -114519641 + L2 LINE L2 1466 1645 -1669 1863 154 13 3 chr11 36263912 36264218 -114519335 + AluJb SINE Alu 3 311 -1 940 301 172 30 chr11 36264218 36264612 -114518941 + L2 LINE L2 1645 2156 -1158 1053 133 17 33 chr11 36264612 36264793 -114518760 - AluSx SINE Alu -1 311 134 600 109 0 40 chr11 36264793 36264894 -114518659 - L1PA8 LINE L1 0 6172 6076 2689 65 6 0 chr11 36264895 36265231 -114518322 - L1PA8 LINE L1 -30 6142 5805 973 94 0 0 chr11 36265248 36265375 -114518178 - AluSx SINE Alu -179 134 8 1676 309 77 40 chr11 36265378 36266321 -114517232 + L2 LINE L2 2154 3219 -94 1856 125 10 20 chr11 36266664 36266802 -114516751 + AluSx SINE Alu 1 139 -173 2198 96 0 0 chr11 36266802 36267095 -114516458 + AluY SINE Alu 1 293 -18 1856 125 10 20 chr11 36267095 36267259 -114516294 + AluSx SINE Alu 139 300 -12 1260 141 4 18 chr11 36267344 36267571 -114515982 - AluJo SINE Alu -1 311 88 560 271 144 18 chr11 36267817 36268046 -114515507 - MIR SINE MIR 0 262 5 1907 134 0 3 chr11 36268249 36268555 -114514998 - AluSx SINE Alu 0 305 1 904 130 0 0 chr11 36268576 36268714 -114514839 - FRAM SINE Alu -8 168 31 2219 107 0 0 chr11 36268857 36269155 -114514398 - AluSg SINE Alu -12 298 1 931 114 0 15 chr11 36269508 36269640 -114513913 + FLAM_C SINE Alu 1 130 -3 737 178 82 14 chr11 36270035 36270181 -114513372 - FAM SINE Alu -18 167 12 1883 148 0 0 chr11 36270382 36270679 -114512874 - AluJb SINE Alu -15 297 1 236 283 141 0 chr11 36270714 36270806 -114512747 + MIR SINE MIR 156 260 -2 374 295 38 19 chr11 36271440 36271545 -114512008 + MIR SINE MIR 50 156 -106 880 98 8 15 chr11 36271567 36271699 -114511854 + AluSq/x SINE Alu 1 131 -182 774 206 77 0 chr11 36272094 36272249 -114511304 - FAM SINE Alu -18 167 1 223 84 42 28 chr11 36272267 36272338 -114511215 + (TTA)n Simple_repeat Simple_repeat 1 72 0 37 69 0 0 chr11 36272355 36272427 -114511126 + AT_rich Low_complexity Low_complexity 1 72 0 240 35 0 0 chr11 36272611 36272640 -114510913 + (CCCCCT)n Simple_repeat Simple_repeat 2 30 0 9993 45 1 77 chr11 36272640 36274078 -114509475 + SVA Other Other 57 1386 0 2001 143 0 0 chr11 36274426 36274733 -114508820 + AluSx SINE Alu 1 307 -5 1556 145 0 93 chr11 36275428 36275760 -114507793 - AluJb SINE Alu -11 301 1 417 219 84 17 chr11 36275760 36275871 -114507682 - MIR SINE MIR -52 210 89 1746 149 68 54 chr11 36276086 36276456 -114507097 - THE1C LTR MaLR 0 375 1 239 150 0 0 chr11 36276673 36276713 -114506840 + MER45 DNA AcHobo 1 40 -1541 417 267 48 0 chr11 36276716 36276821 -114506732 - MER5A DNA MER1_type -71 118 9 7207 128 128 104 chr11 36276973 36278631 -114504922 + pTR5 LTR ERV1 741 2438 0 348 196 167 20 chr11 36278640 36278742 -114504811 + MIR SINE MIR 96 212 -50 1865 138 27 7 chr11 36278947 36279245 -114504308 - AluSx SINE Alu -8 304 1 2101 161 5 72 chr11 36279326 36279489 -114504064 - MLT1B LTR MaLR -3 387 215 1394 211 35 54 chr11 36279489 36279824 -114503729 - MLT1A1 LTR MaLR -2 363 34 1713 166 0 3 chr11 36279824 36280138 -114503415 + AluJo SINE Alu 1 312 0 1394 211 35 54 chr11 36280138 36280172 -114503381 - MLT1A1 LTR MaLR -331 34 1 2101 161 5 72 chr11 36280172 36280236 -114503317 - MLT1B LTR MaLR -175 215 148 1962 126 33 0 chr11 36280236 36280538 -114503015 - AluSx SINE Alu 0 312 1 2101 161 5 72 chr11 36280538 36280724 -114502829 - MLT1B LTR MaLR -242 148 1 2582 23 7 3 chr11 36280811 36281120 -114502433 - AluY SINE Alu -1 310 1 425 296 53 0 chr11 36281234 36281366 -114502187 + MIR SINE MIR 65 203 -59 1766 162 0 3 chr11 36281432 36281729 -114501824 - AluJb SINE Alu -16 296 1 1937 121 50 0 chr11 36281752 36282049 -114501504 - AluSx SINE Alu 0 312 1 971 129 18 47 chr11 36282081 36282251 -114501302 + LTR47A LTR ERVL 1 165 -287 1131 132 30 0 chr11 36282471 36282668 -114500885 - L1MA4A LINE L1 -1 6302 6100 1676 141 72 34 chr11 36282673 36282853 -114500700 + LTR47A LTR ERVL 151 348 -104 2231 107 0 0 chr11 36282853 36283162 -114500391 - AluSx SINE Alu -3 309 1 1676 141 72 34 chr11 36283162 36283272 -114500281 + LTR47A LTR ERVL 348 452 0 182 358 0 0 chr11 36284608 36284675 -114498878 + L2 LINE L2 2992 3058 -214 201 254 0 90 chr11 36284800 36284867 -114498686 + L2 LINE L2 3189 3249 -23 2091 105 0 7 chr11 36285194 36285509 -114498044 + AluSx SINE Alu 1 313 0 556 260 73 29 chr11 36285740 36285944 -114497609 + MIR SINE MIR 18 230 -32 2233 92 3 0 chr11 36285983 36286289 -114497264 - AluSx SINE Alu -5 307 1 568 239 107 49 chr11 36287113 36287244 -114496309 + L1M4 LINE L1 2846 2968 -3178 1851 112 48 0 chr11 36287244 36287546 -114496007 - AluSc SINE Alu 0 315 1 568 239 107 49 chr11 36287546 36287844 -114495709 + L1M4 LINE L1 2968 3301 -2845 2151 125 0 0 chr11 36287845 36288156 -114495397 + AluSx SINE Alu 1 311 -1 452 147 27 0 chr11 36288172 36288247 -114495306 + AluSx SINE Alu 7 83 -230 1476 111 0 5 chr11 36288285 36288518 -114495035 + AluSx SINE Alu 75 306 0 375 318 64 23 chr11 36288671 36288844 -114494709 + MIR SINE MIR 15 194 -68 1781 144 33 13 chr11 36288893 36289199 -114494354 + AluSx SINE Alu 1 312 0 703 180 0 8 chr11 36289204 36289332 -114494221 + FLAM_A SINE Alu 1 127 -6 451 140 184 19 chr11 36289799 36289913 -114493640 + L1MB5 LINE L1 6044 6183 0 1867 120 87 39 chr11 36290084 36290442 -114493111 + THE1C LTR MaLR 1 375 0 1226 166 0 35 chr11 36290767 36290996 -114492557 + AluJb SINE Alu 85 305 -7 830 153 0 0 chr11 36291012 36291130 -114492423 + FLAM_C SINE Alu 7 124 -19 861 288 24 4 chr11 36291313 36291563 -114491990 - MIR SINE MIR -6 256 2 494 196 10 0 chr11 36291603 36291700 -114491853 - MLT1K LTR MaLR -162 426 329 504 274 193 46 chr11 36291812 36292243 -114491310 + MLT1H1 LTR MaLR 32 525 -30 245 369 121 19 chr11 36292444 36292601 -114490952 + MIR SINE MIR 20 192 -70 2125 126 0 0 chr11 36293104 36293414 -114490139 - AluSx SINE Alu -2 310 1 725 241 122 30 chr11 36293666 36293903 -114489650 + MIR SINE MIR 2 260 -2 2218 97 0 7 chr11 36294548 36294856 -114488697 - AluSg SINE Alu -4 306 1 1942 132 7 0 chr11 36294856 36295145 -114488408 - AluSx SINE Alu -21 291 1 488 281 9 0 chr11 36295415 36295529 -114488024 + MIR3 SINE MIR 82 196 -12 2234 101 0 3 chr11 36295536 36295842 -114487711 + AluSx SINE Alu 1 305 -7 1544 108 31 0 chr11 36295932 36296155 -114487398 + MER30 DNA MER1_type 1 230 0 2021 129 7 0 chr11 36296299 36296602 -114486951 + AluSg SINE Alu 1 305 -5 357 340 12 92 chr11 36297022 36297137 -114486416 - L2 LINE L2 -155 3117 2994 2341 77 0 0 chr11 36297137 36297434 -114486119 - AluSp SINE Alu -15 298 2 357 340 12 92 chr11 36297434 36297656 -114485897 - L2 LINE L2 -278 2994 2807 609 188 56 129 chr11 36297824 36297862 -114485691 - L1M2 LINE L1 -577 5607 5568 2136 120 7 10 chr11 36297862 36298170 -114485383 - AluSg SINE Alu -3 307 1 609 188 56 129 chr11 36298170 36298285 -114485268 - L1M2 LINE L1 -616 5568 5446 201 57 0 29 chr11 36298285 36298320 -114485233 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 2120 114 0 0 chr11 36298320 36298601 -114484952 - AluSx SINE Alu -1 315 1 609 188 56 129 chr11 36298601 36298682 -114484871 - L1M2 LINE L1 -736 5448 5419 2332 214 61 80 chr11 36299179 36299234 -114484319 + L1ME3A LINE L1 5435 5490 -680 1874 157 0 0 chr11 36299234 36299514 -114484039 + AluJb SINE Alu 1 280 -32 200 83 0 28 chr11 36299517 36299553 -114484000 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2332 214 61 80 chr11 36299553 36299635 -114483918 + L1ME3A LINE L1 5492 5574 -596 2093 119 7 3 chr11 36299635 36299930 -114483623 + AluSx SINE Alu 1 296 -16 2332 214 61 80 chr11 36299930 36300410 -114483143 + L1ME3A LINE L1 5574 6062 -108 1600 142 0 122 chr11 36300410 36300587 -114482966 - AluJb SINE Alu 0 302 105 195 42 0 0 chr11 36300587 36300611 -114482942 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2244 84 14 3 chr11 36300612 36300897 -114482656 - AluSq SINE Alu -25 288 1 1600 142 0 122 chr11 36300897 36301061 -114482492 - AluJb SINE Alu -196 106 1 2332 214 61 80 chr11 36301061 36301179 -114482374 + L1ME3A LINE L1 6062 6162 -8 2417 81 0 3 chr11 36301337 36301635 -114481918 - AluSp SINE Alu -15 298 2 2264 111 7 0 chr11 36302075 36302381 -114481172 - AluY SINE Alu -3 308 1 925 262 197 29 chr11 36302917 36303302 -114480251 + MLT1G LTR MaLR 141 590 0 1336 189 42 39 chr11 36303440 36303746 -114479807 + AluJo SINE Alu 1 307 -5 2030 150 7 0 chr11 36304011 36304305 -114479248 + AluSx SINE Alu 3 298 -14 2191 103 0 27 chr11 36304306 36304607 -114478946 + AluSg SINE Alu 2 294 -16 216 0 0 0 chr11 36304945 36304969 -114478584 + (TA)n Simple_repeat Simple_repeat 2 25 0 1211 288 114 40 chr11 36305352 36305709 -114477844 - L2 LINE L2 -595 2719 2390 1985 114 0 17 chr11 36305709 36306045 -114477508 - AluSq SINE Alu 0 331 1 1211 288 114 40 chr11 36306045 36306421 -114477132 - L2 LINE L2 -924 2390 1930 374 286 104 11 chr11 36306727 36306909 -114476644 - L2 LINE L2 -1395 1919 1721 343 215 51 13 chr11 36307197 36307276 -114476277 - MER5A DNA MER1_type -100 89 8 2214 117 3 0 chr11 36307316 36307616 -114475937 + AluSx SINE Alu 1 301 -11 448 297 33 6 chr11 36307623 36307805 -114475748 + L2 LINE L2 2571 2757 -557 657 175 8 50 chr11 36307835 36307929 -114475624 - MLT2B1 LTR ERVL -202 313 217 2028 116 3 14 chr11 36307929 36308223 -114475330 + AluSp SINE Alu 1 291 -22 402 21 0 0 chr11 36308223 36308270 -114475283 + (GA)n Simple_repeat Simple_repeat 2 48 0 657 175 8 50 chr11 36308270 36308294 -114475259 - MLT2B1 LTR ERVL -296 219 199 843 147 0 31 chr11 36308299 36308428 -114475125 - FLAM_C SINE Alu -17 126 2 1553 95 5 5 chr11 36308429 36308639 -114474914 - MLT2B1 LTR ERVL -309 211 2 337 307 51 89 chr11 36308641 36308810 -114474743 - L2 LINE L2 -2769 545 371 1745 174 0 11 chr11 36308810 36309092 -114474461 + AluJo SINE Alu 3 281 -31 337 307 51 89 chr11 36309092 36309293 -114474260 - L2 LINE L2 -2943 371 189 942 202 33 0 chr11 36309306 36309489 -114474064 - MER5A DNA MER1_type 0 189 1 800 169 0 0 chr11 36310711 36310829 -114472724 - FLAM_C SINE Alu -25 118 1 1812 160 13 20 chr11 36311728 36312034 -114471519 + AluJo SINE Alu 1 304 -8 1813 136 0 0 chr11 36312785 36313043 -114470510 - AluSg SINE Alu -15 295 38 180 0 0 0 chr11 36313394 36313414 -114470139 + (T)n Simple_repeat Simple_repeat 1 20 0 2233 118 3 3 chr11 36313427 36313732 -114469821 + AluSx SINE Alu 1 305 -7 766 225 13 0 chr11 36313866 36314017 -114469536 - FRAM SINE Alu -23 153 1 2317 114 0 3 chr11 36314714 36315021 -114468532 - AluSq SINE Alu -7 306 1 285 257 124 62 chr11 36315061 36315201 -114468352 - L3 LINE CR1 -84 1493 1330 2215 110 3 3 chr11 36315201 36315501 -114468052 + AluSx SINE Alu 1 300 -12 285 257 124 62 chr11 36315501 36315601 -114467952 - L3 LINE CR1 -247 1330 1238 2680 49 0 0 chr11 36315857 36316162 -114467391 + AluY SINE Alu 1 305 -6 22 80 0 0 chr11 36316487 36316537 -114467016 + AT_rich Low_complexity Low_complexity 1 50 0 1629 108 124 12 chr11 36317322 36317581 -114465972 - AluSg1 SINE Alu -21 288 1 2496 62 0 10 chr11 36318468 36318775 -114464778 - AluY SINE Alu -7 304 1 1041 162 0 46 chr11 36318888 36319085 -114464468 - MER5A DNA MER1_type -1 188 1 1242 155 61 84 chr11 36319506 36319803 -114463750 - AluJb SINE Alu -22 290 1 2154 104 0 7 chr11 36319824 36320145 -114463408 - AluSg SINE Alu 0 310 1 1850 108 64 47 chr11 36320148 36320444 -114463109 - AluSg SINE Alu -8 302 2 2046 149 7 0 chr11 36320445 36320741 -114462812 - AluSx SINE Alu -12 300 3 1371 183 42 39 chr11 36321006 36321312 -114462241 - AluJo SINE Alu -5 307 1 1137 256 158 75 chr11 36321450 36321996 -114461557 - MLT1G LTR MaLR 0 590 5 2238 105 7 0 chr11 36322665 36322961 -114460592 - AluSg SINE Alu -12 298 1 24 0 0 0 chr11 36323005 36323029 -114460524 + AT_rich Low_complexity Low_complexity 1 24 0 216 67 0 0 chr11 36323421 36323451 -114460102 + (A)n Simple_repeat Simple_repeat 1 30 0 1665 176 7 4 chr11 36323937 36324209 -114459344 - AluSx SINE Alu -39 273 1 2294 102 3 0 chr11 36324222 36324515 -114459038 - AluSp SINE Alu -19 294 1 2083 128 7 0 chr11 36324515 36324804 -114458749 - AluSx SINE Alu -21 291 1 443 281 9 0 chr11 36325074 36325188 -114458365 + MIR3 SINE MIR 82 196 -12 2361 101 0 3 chr11 36325195 36325501 -114458052 + AluSx SINE Alu 1 305 -7 1555 104 36 0 chr11 36325591 36325813 -114457740 + MER30 DNA MER1_type 1 230 0 2370 92 7 0 chr11 36325957 36326263 -114457290 + AluSg SINE Alu 1 308 -2 756 145 140 55 chr11 36326332 36326532 -114457021 + L1ME1 LINE L1 5800 6016 -150 637 235 7 7 chr11 36326532 36326685 -114456868 + L1MA10 LINE L1 6175 6327 -7 2086 140 6 16 chr11 36326760 36327075 -114456478 + AluJo SINE Alu 1 312 0 187 203 31 0 chr11 36327137 36327201 -114456352 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 2428 94 19 0 chr11 36327582 36327889 -114455664 - AluSq SINE Alu 0 313 1 2262 78 0 39 chr11 36327902 36328208 -114455345 - AluY SINE Alu -17 294 1 2022 151 20 0 chr11 36328694 36328999 -114454554 - AluSx SINE Alu -1 311 1 628 300 99 73 chr11 36329331 36329868 -114453685 + MLT1K LTR MaLR 35 585 -3 445 321 47 31 chr11 36330209 36330271 -114453282 - MIR SINE MIR -17 245 185 351 0 0 0 chr11 36330271 36330310 -114453243 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 2223 92 3 7 chr11 36330312 36330595 -114452958 - AluSp SINE Alu -31 282 1 445 321 47 31 chr11 36330595 36330722 -114452831 - MIR SINE MIR -77 185 50 195 266 127 0 chr11 36331369 36331448 -114452105 - MIR SINE MIR -18 244 156 1984 149 0 0 chr11 36331486 36331781 -114451772 + AluJb SINE Alu 2 296 -16 2446 100 0 0 chr11 36332028 36332338 -114451215 - AluSg SINE Alu 0 310 1 481 276 39 0 chr11 36332456 36332583 -114450970 - L2 LINE L2 -3 3310 3179 2339 88 7 3 chr11 36332704 36333009 -114450544 + AluSp SINE Alu 1 306 -7 1383 236 183 60 chr11 36333283 36333356 -114450197 - LTR41 LTR ERVL -1 772 709 2103 110 7 35 chr11 36333356 36333666 -114449887 + AluSx SINE Alu 1 301 -11 1508 105 5 0 chr11 36333666 36333856 -114449697 + AluSx SINE Alu 1 192 -120 1383 236 183 60 chr11 36333856 36334312 -114449241 - LTR41 LTR ERVL -64 709 135 1833 47 177 12 chr11 36334312 36334566 -114448987 + AluY SINE Alu 1 296 -15 1383 236 183 60 chr11 36334566 36334721 -114448832 - LTR41 LTR ERVL -638 135 1 28 0 0 0 chr11 36334840 36334868 -114448685 + AT_rich Low_complexity Low_complexity 1 28 0 517 275 140 0 chr11 36335080 36335258 -114448295 + MIR SINE MIR 20 222 -40 308 272 112 8 chr11 36335799 36335924 -114447629 - MIR3 SINE MIR -21 187 50 2265 82 7 0 chr11 36335955 36336237 -114447316 + AluSg SINE Alu 1 284 -26 394 128 17 211 chr11 36336792 36336946 -114446607 + L1MD1 LINE L1 6117 6226 -16 2365 96 0 13 chr11 36337068 36337381 -114446172 + AluSq SINE Alu 1 309 -4 2356 105 0 3 chr11 36338175 36338480 -114445073 - AluSq SINE Alu -9 304 1 23 33 0 0 chr11 36338576 36338606 -114444947 + AT_rich Low_complexity Low_complexity 1 30 0 762 213 118 147 chr11 36338798 36339279 -114444274 + MLT1H1 LTR MaLR 3 480 -75 1395 94 0 0 chr11 36339279 36339449 -114444104 - AluSg/x SINE Alu -16 296 127 537 113 12 12 chr11 36339480 36339560 -114443993 + AluSg1 SINE Alu 4 83 -226 2630 130 22 49 chr11 36339734 36339767 -114443786 + L1MA2 LINE L1 5773 5805 -499 2187 102 10 3 chr11 36339767 36340060 -114443493 + AluSx SINE Alu 1 295 -17 2630 130 22 49 chr11 36340060 36340416 -114443137 + L1MA2 LINE L1 5805 6146 -158 2077 107 7 7 chr11 36340416 36340719 -114442834 + AluSx SINE Alu 1 303 0 2630 130 22 49 chr11 36340719 36340874 -114442679 + L1MA2 LINE L1 6146 6304 0 1698 131 113 7 chr11 36341264 36341546 -114442007 - AluJb SINE Alu 0 312 1 374 269 41 28 chr11 36341579 36341724 -114441829 - MIR SINE MIR -12 250 104 2132 138 3 0 chr11 36341920 36342217 -114441336 + AluSx SINE Alu 1 298 -14 626 255 28 75 chr11 36343019 36343301 -114440252 - MER102b DNA MER1_type 0 341 73 2013 160 0 0 chr11 36343952 36344252 -114439301 + AluJb SINE Alu 3 302 -10 322 273 0 0 chr11 36344713 36344790 -114438763 - L2 LINE L2 -6 3307 3231 499 244 134 0 chr11 36345500 36345627 -114437926 + MIR SINE MIR 47 190 -72 1990 133 0 0 chr11 36345748 36346034 -114437519 - Tigger3(Golem) DNA MER2_type 0 3029 2744 306 170 0 0 chr11 36346040 36346093 -114437460 - AluSp/q SINE Alu -62 241 189 238 96 0 40 chr11 36346093 36346344 -114437209 + AluSq SINE Alu 1 303 0 * 2301 90 76 69 chr11 36346340 36346520 -114437033 - Tigger3(Golem) DNA MER2_type -275 2753 2576 854 173 0 0 chr11 36346520 36346653 -114436900 + FLAM_C SINE Alu 1 133 0 2301 90 76 69 chr11 36346653 36346895 -114436658 - Tigger3(Golem) DNA MER2_type -452 2576 2328 2008 145 7 3 chr11 36346896 36347206 -114436347 + AluSx SINE Alu 1 311 -1 330 280 80 27 chr11 36347897 36347953 -114435600 - MIR SINE MIR 0 262 210 1953 147 13 13 chr11 36347953 36348265 -114435288 - AluJb SINE Alu 0 312 1 330 280 80 27 chr11 36348265 36348358 -114435195 - MIR SINE MIR -52 210 105 2488 87 0 0 chr11 36348691 36349001 -114434552 - AluSg SINE Alu 0 310 1 203 237 0 0 chr11 36349035 36349073 -114434480 + polypyrimidine Low_complexity Low_complexity 3 40 0 234 62 0 0 chr11 36349570 36349602 -114433951 + (T)n Simple_repeat Simple_repeat 1 32 0 314 108 5 0 chr11 36349757 36349810 -114433743 + MER63 DNA MER1_type 8 43 -167 457 210 40 10 chr11 36349810 36349910 -114433643 + MER21B LTR ERV1 1 103 -760 3628 210 31 37 chr11 36349912 36350750 -114432803 + MER21B LTR ERV1 20 852 -11 183 162 0 0 chr11 36350751 36350788 -114432765 + (TA)n Simple_repeat Simple_repeat 1 37 0 337 300 0 0 chr11 36350788 36350878 -114432675 - L1MC4 LINE L1 -1338 6704 6615 513 169 66 25 chr11 36351092 36351246 -114432307 - Tigger3(Golem) DNA MER2_type -686 2343 1 2149 135 0 0 chr11 36351304 36351607 -114431946 - AluSx SINE Alu -9 303 1 1957 111 35 3 chr11 36352304 36352592 -114430961 - AluSq SINE Alu -16 297 1 180 182 0 0 chr11 36353095 36353139 -114430414 + (CACCAT)n Simple_repeat Simple_repeat 5 48 0 2080 96 0 21 chr11 36353836 36354118 -114429435 - AluSx SINE Alu -23 289 14 1833 177 0 10 chr11 36354498 36354803 -114428750 + AluJb SINE Alu 1 302 -10 262 261 42 21 chr11 36354819 36354961 -114428592 - L1ME4a LINE L1 -16 6105 5961 414 58 0 0 chr11 36355894 36355946 -114427607 - MADE1 DNA Mariner 0 80 29 489 262 35 0 chr11 36356567 36356712 -114426841 - L2 LINE L2 -6 3307 3158 4542 146 71 33 chr11 36356716 36357829 -114425724 + L1MB7 LINE L1 5021 6175 -9 2013 143 13 3 chr11 36357846 36358154 -114425399 + AluSx SINE Alu 1 311 -1 34 42 0 0 chr11 36358291 36358339 -114425214 + AT_rich Low_complexity Low_complexity 1 48 0 1809 127 21 28 chr11 36358584 36358867 -114424686 + AluSq SINE Alu 1 281 -32 261 0 0 0 chr11 36358867 36358896 -114424657 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 358 131 16 0 chr11 36358897 36358958 -114424595 - L1MA10 LINE L1 -7 6327 6266 1031 192 0 11 chr11 36358992 36359169 -114424384 - FAM SINE Alu 0 175 1 207 261 0 0 chr11 36359568 36359637 -114423916 + L2 LINE L2 2593 2661 -653 228 163 0 0 chr11 36359675 36359718 -114423835 + (CA)n Simple_repeat Simple_repeat 1 43 0 335 279 82 55 chr11 36359740 36360146 -114423407 + L2 LINE L2 2683 3091 -181 2000 159 0 0 chr11 36360643 36360932 -114422621 + AluJo SINE Alu 1 289 -23 477 257 181 12 chr11 36361119 36361290 -114422263 - MIR SINE MIR -60 202 3 206 271 57 41 chr11 36361290 36361391 -114422162 + L2 LINE L2 3207 3309 -4 351 238 24 0 chr11 36361414 36361498 -114422055 - L2 LINE L2 0 3272 3187 193 326 12 0 chr11 36361507 36361593 -114421960 - L3 LINE CR1 -33 1544 1458 250 257 29 48 chr11 36361690 36361795 -114421758 - L3 LINE CR1 -293 1284 1182 1953 146 3 0 chr11 36361865 36362152 -114421401 + AluJb SINE Alu 2 289 -23 317 296 68 0 chr11 36362176 36362264 -114421289 - L2 LINE L2 -36 3236 3143 371 83 17 0 chr11 36362602 36362662 -114420891 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 267 307 10 0 chr11 36362786 36362887 -114420666 + MIR SINE MIR 157 258 -4 257 303 40 10 chr11 36362911 36363010 -114420543 - L3 LINE CR1 -811 766 665 458 275 13 13 chr11 36363515 36363664 -114419889 + MER103 DNA DNA 2 150 -16 204 171 0 0 chr11 36363690 36363704 -114419849 + A-rich Low_complexity Low_complexity 1 14 -27 2645 48 0 10 chr11 36363704 36364018 -114419535 + AluY SINE Alu 1 311 0 204 171 0 0 chr11 36364018 36364044 -114419509 + A-rich Low_complexity Low_complexity 13 41 0 2479 83 0 6 chr11 36364370 36364684 -114418869 + AluSx SINE Alu 1 312 0 2373 88 0 25 chr11 36365030 36365349 -114418204 + AluSx SINE Alu 1 311 -1 2039 126 37 62 chr11 36365408 36365487 -114418066 - MER47A DNA MER2_type -1957 366 287 2026 82 44 7 chr11 36365487 36365784 -114417769 + AluY SINE Alu 3 309 0 2039 126 37 62 chr11 36365784 36366077 -114417476 - MER47A DNA MER2_type -2036 287 2 1916 139 29 0 chr11 36366212 36366492 -114417061 + AluSx SINE Alu 1 288 -24 225 0 0 0 chr11 36366586 36366611 -114416942 + (CA)n Simple_repeat Simple_repeat 2 26 0 208 218 18 18 chr11 36366689 36366744 -114416809 - MIR SINE MIR -12 250 196 225 132 0 0 chr11 36367025 36367063 -114416490 + (TC)n Simple_repeat Simple_repeat 2 39 0 278 298 91 8 chr11 36367233 36367354 -114416199 - MIR SINE MIR -98 164 34 192 40 0 0 chr11 36367719 36367744 -114415809 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 890 168 0 0 chr11 36367761 36367892 -114415661 - AluSq/x SINE Alu -180 133 3 807 285 17 7 chr11 36368861 36369159 -114414394 + AluSq SINE Alu 3 303 -10 1254 278 14 33 chr11 36369168 36369535 -114414018 - MLT1I LTR MaLR -49 360 1 3668 194 42 35 chr11 36369620 36370400 -114413153 - MER63C DNA MER1_type -130 930 142 2228 120 0 3 chr11 36370400 36370709 -114412844 + AluSx SINE Alu 5 312 0 3668 194 42 35 chr11 36370709 36370804 -114412749 - MER63C DNA MER1_type -918 142 49 324 200 0 0 chr11 36370806 36370881 -114412672 + (TA)n Simple_repeat Simple_repeat 1 75 0 255 284 23 0 chr11 36370882 36370970 -114412583 - L1MC4 LINE L1 -1339 6703 6614 242 292 0 0 chr11 36370976 36371065 -114412488 - L1MC4 LINE L1 -1339 6703 6615 315 177 0 0 chr11 36371066 36371128 -114412425 + (TA)n Simple_repeat Simple_repeat 2 63 0 233 289 22 0 chr11 36371129 36371219 -114412334 + L1MC4 LINE L1 6615 6706 -1336 189 262 0 0 chr11 36371219 36371280 -114412273 + (TA)n Simple_repeat Simple_repeat 1 61 0 2217 110 7 3 chr11 36371618 36371917 -114411636 - AluSx SINE Alu -12 300 1 189 0 0 0 chr11 36371930 36371951 -114411602 + (A)n Simple_repeat Simple_repeat 1 21 0 1989 100 0 4 chr11 36372300 36372560 -114410993 + AluSg SINE Alu 38 296 -14 2390 86 0 3 chr11 36373394 36373685 -114409868 + AluSx SINE Alu 1 290 -22 2111 116 10 13 chr11 36373811 36374122 -114409431 + AluSq SINE Alu 1 310 -3 2047 111 14 17 chr11 36376204 36376501 -114407052 + AluSq SINE Alu 1 296 -17 858 167 6 56 chr11 36376503 36376683 -114406870 + AluSg/x SINE Alu 135 305 -5 2242 98 3 0 chr11 36377107 36377402 -114406151 + AluSp SINE Alu 1 296 -17 26 30 0 0 chr11 36379300 36379333 -114404220 + GC_rich Low_complexity Low_complexity 1 33 0 33 90 0 0 chr11 36379573 36379662 -114403891 + GC_rich Low_complexity Low_complexity 1 89 0 754 235 290 5 chr11 36381186 36381627 -114401926 - L2 LINE L2 -4 3309 2748 235 270 0 16 chr11 36381807 36381870 -114401683 + MER5A DNA MER1_type 128 189 0 526 208 54 71 chr11 36381897 36382065 -114401488 + MER58B DNA MER1_type 177 341 0 1862 137 42 7 chr11 36382082 36382367 -114401186 + AluSx SINE Alu 1 295 -17 625 287 84 35 chr11 36382376 36382662 -114400891 - MLT1I LTR MaLR -91 318 19 1102 136 0 0 chr11 36383906 36384060 -114399493 + AluSg/x SINE Alu 147 300 -12 2267 97 0 10 chr11 36384150 36384439 -114399114 + AluSx SINE Alu 11 296 -16 450 0 0 0 chr11 36384777 36384827 -114398726 + (TA)n Simple_repeat Simple_repeat 2 51 0 1200 290 114 40 chr11 36385208 36385565 -114397988 - L2 LINE L2 -595 2719 2390 2044 108 0 14 chr11 36385565 36385884 -114397669 - AluSq SINE Alu 0 315 1 1200 290 114 40 chr11 36385884 36386260 -114397293 - L2 LINE L2 -924 2390 1930 374 286 104 11 chr11 36386566 36386748 -114396805 - L2 LINE L2 -1395 1919 1721 352 215 51 13 chr11 36387036 36387115 -114396438 - MER5A DNA MER1_type -100 89 8 2196 120 3 0 chr11 36387155 36387456 -114396097 + AluSx SINE Alu 1 302 -10 448 297 33 6 chr11 36387463 36387645 -114395908 + L2 LINE L2 2571 2757 -557 639 171 8 73 chr11 36387675 36387769 -114395784 - MLT2B1 LTR ERVL -202 313 214 2229 107 3 0 chr11 36387769 36388059 -114395494 + AluSp SINE Alu 1 291 -22 249 33 0 0 chr11 36388059 36388089 -114395464 + (GA)n Simple_repeat Simple_repeat 2 31 0 639 171 8 73 chr11 36388089 36388116 -114395437 - MLT2B1 LTR ERVL -299 216 199 843 147 0 31 chr11 36388121 36388250 -114395303 - FLAM_C SINE Alu -17 126 2 1553 95 5 5 chr11 36388251 36388461 -114395092 - MLT2B1 LTR ERVL -309 211 2 337 307 51 89 chr11 36388463 36388632 -114394921 - L2 LINE L2 -2769 545 371 1729 177 0 11 chr11 36388632 36388914 -114394639 + AluJo SINE Alu 3 281 -31 337 307 51 89 chr11 36388914 36389115 -114394438 - L2 LINE L2 -2943 371 189 942 202 33 0 chr11 36389128 36389311 -114394242 - MER5A DNA MER1_type 0 189 1 835 144 0 0 chr11 36390533 36390651 -114392902 - FLAM_C SINE Alu -25 118 1 245 286 60 24 chr11 36390660 36390744 -114392809 - MIR SINE MIR -71 191 105 299 218 154 13 chr11 36391086 36391164 -114392389 - Tigger3(Golem) DNA MER2_type -2940 89 1 2170 133 0 0 chr11 36391222 36391524 -114392029 - AluSx SINE Alu -10 302 1 2343 72 27 0 chr11 36392221 36392513 -114391040 - AluSq SINE Alu -13 300 1 257 106 43 64 chr11 36392514 36392561 -114390992 + MLT1I LTR MaLR 363 408 -1 21 57 0 0 chr11 36393005 36393040 -114390513 + AT_rich Low_complexity Low_complexity 1 35 0 1880 168 28 3 chr11 36393128 36393446 -114390107 + AluJb SINE Alu 1 312 0 338 207 0 0 chr11 36393645 36393703 -114389850 - MLT1H1 LTR MaLR -2 553 496 330 270 0 0 chr11 36393705 36393800 -114389753 - AluSg/x SINE Alu 0 302 208 548 273 252 11 chr11 36496506 36496792 -114286761 + L2 LINE L2 1997 2351 -963 953 216 4 17 chr11 36497350 36497582 -114285971 + L1MCc LINE L1 17 245 -6178 5174 256 111 29 chr11 36497583 36498222 -114285331 + L1MCc LINE L1 1642 2227 -4714 3529 163 44 30 chr11 36498222 36498309 -114285244 + L1MB3 LINE L1 5452 5536 -647 1448 178 73 4 chr11 36498309 36498584 -114284969 - AluJo SINE Alu -18 294 1 3529 163 44 30 chr11 36498584 36499218 -114284335 + L1MB3 LINE L1 5536 6183 0 5174 256 111 29 chr11 36499218 36500532 -114283021 + L1MCc LINE L1 2227 3431 -3510 2033 142 0 3 chr11 36500532 36500834 -114282719 + AluSx SINE Alu 2 302 -10 5174 256 111 29 chr11 36500834 36501973 -114281580 + L1MCc LINE L1 3431 4997 -1944 1126 177 59 5 chr11 36502357 36502577 -114280976 - MER46A DNA MER2_type -4 232 1 23 0 0 0 chr11 36502860 36502883 -114280670 + AT_rich Low_complexity Low_complexity 1 23 0 222 300 14 0 chr11 36503427 36503497 -114280056 + (CATA)n Simple_repeat Simple_repeat 2 72 0 2271 108 7 10 chr11 36503585 36503892 -114279661 + AluSg SINE Alu 1 306 -4 1788 169 135 17 chr11 36503942 36504298 -114279255 - MER47B DNA MER2_type -1 417 20 796 200 42 50 chr11 36504298 36504538 -114279015 + L1MCc LINE L1 3484 3721 -3220 1665 182 38 7 chr11 36504952 36505243 -114278310 - AluJo SINE Alu -12 300 1 2404 115 0 0 chr11 36506079 36506391 -114277162 + AluSx SINE Alu 1 312 0 2185 212 43 69 chr11 36507550 36508219 -114275334 + MLT1E1 LTR MaLR 3 654 0 2186 130 10 0 chr11 36508608 36508909 -114274644 - AluSx SINE Alu -8 304 1 1646 169 6 49 chr11 36509651 36509977 -114273576 + AluJo SINE Alu 1 312 0 183 369 115 25 chr11 36510637 36511071 -114272482 + L2 LINE L2 2231 2703 -611 257 262 47 47 chr11 36511815 36511922 -114271631 + L2 LINE L2 3127 3233 -80 646 284 44 78 chr11 36511931 36512364 -114271189 + L1MCc LINE L1 5285 5702 -1239 22 35 0 0 chr11 36512892 36512921 -114270632 + AT_rich Low_complexity Low_complexity 1 29 0 3881 146 82 40 chr11 36513161 36514019 -114269534 - L1MB3 LINE L1 -8 6175 5282 26 0 0 0 chr11 36514028 36514054 -114269499 + AT_rich Low_complexity Low_complexity 1 26 0 310 227 0 0 chr11 36514245 36514311 -114269242 - Charlie8 DNA MER1_type -2229 188 123 2107 107 7 7 chr11 36514630 36514911 -114268642 + AluSp SINE Alu 1 281 -32 305 302 12 0 chr11 36515393 36515479 -114268074 + L2 LINE L2 3185 3271 -1 197 200 113 62 chr11 36516041 36516121 -114267432 - L3 LINE CR1 -237 1340 1257 293 295 157 19 chr11 36518068 36518278 -114265275 - L3 LINE CR1 -636 941 703 836 238 42 0 chr11 36518279 36518468 -114265085 + MIR SINE MIR 40 236 -26 935 185 82 0 chr11 36519330 36519514 -114264039 - MIR SINE MIR -33 229 31 11492 36 1 0 chr11 36519740 36521193 -114262360 - L1P LINE L1 -1361 4785 3331 7479 26 2 15 chr11 36521194 36521868 -114261685 + L1PA3 LINE L1 4819 5446 -709 2595 36 0 10 chr11 36521868 36522177 -114261376 + AluY SINE Alu 1 306 -5 7479 26 2 15 chr11 36522177 36522878 -114260675 + L1PA3 LINE L1 5446 6155 0 517 165 165 0 chr11 36522880 36523013 -114260540 - MER114 LTR ERV -493 155 1 22 35 0 0 chr11 36523262 36523291 -114260262 + AT_rich Low_complexity Low_complexity 1 29 0 2004 129 41 0 chr11 36523694 36523989 -114259564 + AluSp SINE Alu 5 311 -2 597 305 60 40 chr11 36524999 36525248 -114258305 - MIR SINE MIR -6 256 3 235 291 111 0 chr11 36525753 36525863 -114257690 + L1ME4a LINE L1 5929 6066 -55 216 111 0 0 chr11 36525863 36525899 -114257654 + (TG)n Simple_repeat Simple_repeat 1 36 0 235 291 111 0 chr11 36525899 36525960 -114257593 + L1ME4a LINE L1 6066 6119 -2 579 274 63 104 chr11 36526869 36527318 -114256235 + L1M4 LINE L1 1203 1749 -4885 387 271 8 8 chr11 36527329 36527451 -114256102 + L1ME3 LINE L1 5985 6106 -56 435 307 79 33 chr11 36527565 36527894 -114255659 + HAL1 LINE L1 1424 1767 -740 325 114 100 29 chr11 36528045 36528115 -114255438 + MADE1 DNA Mariner 5 79 -1 24 0 0 0 chr11 36528156 36528180 -114255373 + AT_rich Low_complexity Low_complexity 1 24 0 397 231 46 38 chr11 36528255 36528535 -114255018 + L1M4 LINE L1 2567 2849 -3795 21 36 0 0 chr11 36528679 36528707 -114254846 + AT_rich Low_complexity Low_complexity 1 28 0 2055 125 0 3 chr11 36528807 36529096 -114254457 + AluSq SINE Alu 1 288 -25 245 180 45 0 chr11 36529106 36529195 -114254358 + (TA)n Simple_repeat Simple_repeat 2 94 0 273 344 75 62 chr11 36529196 36529580 -114253973 - L2 LINE L2 -55 3217 2829 255 250 25 25 chr11 36530362 36530442 -114253111 + GA-rich Low_complexity Low_complexity 1 80 0 339 200 71 0 chr11 36530713 36530783 -114252770 + MIR SINE MIR 49 123 -139 243 224 129 12 chr11 36531059 36531144 -114252409 - L2 LINE L2 -37 3276 3182 216 345 66 56 chr11 36531761 36531958 -114251595 - L2 LINE L2 -5 3267 3069 341 191 15 0 chr11 36532159 36532227 -114251326 - MER3 DNA MER1_type -134 75 7 1350 205 45 24 chr11 36532312 36532687 -114250866 + L1MB8 LINE L1 5794 6176 -2 333 0 0 0 chr11 36533726 36533763 -114249790 + (CA)n Simple_repeat Simple_repeat 1 37 0 1354 92 0 0 chr11 36534802 36534975 -114248578 + AluY SINE Alu 122 294 -17 2691 80 15 8 chr11 36534983 36535383 -114248170 + L1PA10 LINE L1 5735 6137 -31 30 0 0 0 chr11 36535503 36535533 -114248020 + AT_rich Low_complexity Low_complexity 1 30 0 242 246 0 43 chr11 36535556 36535625 -114247928 - MER96B DNA MER1_type? -351 66 1 706 257 18 12 chr11 36535719 36535890 -114247663 + MIR SINE MIR 45 216 -46 1175 175 39 4 chr11 36535965 36536222 -114247331 - L1MD3 LINE L1 0 7995 7730 500 244 32 74 chr11 36537379 36537628 -114245925 + MIR SINE MIR 28 262 0 270 301 38 45 chr11 36537907 36538040 -114245513 + MIR SINE MIR 7 138 -124 288 133 0 0 chr11 36538044 36538089 -114245464 + MLT1C LTR MaLR 421 465 -2 289 120 80 0 chr11 36538095 36538145 -114245408 + MIR SINE MIR 140 193 -69 402 21 0 0 chr11 36538377 36538424 -114245129 + (TG)n Simple_repeat Simple_repeat 2 48 0 2116 108 7 0 chr11 36539894 36540200 -114243353 - AluSx SINE Alu 0 309 2 449 270 7 51 chr11 36540362 36540499 -114243054 + MIR SINE MIR 19 149 -59 496 118 97 0 chr11 36540582 36540675 -114242878 - MER58 DNA MER1_type -1 2419 2318 353 211 9 140 chr11 36540687 36540716 -114242837 - MER58 DNA MER1_type -303 83 52 2398 99 0 3 chr11 36540716 36541028 -114242525 - AluSx SINE Alu 0 312 2 353 211 9 140 chr11 36541028 36541112 -114242441 - MER58 DNA MER1_type -334 52 1 479 206 77 48 chr11 36541153 36541362 -114242191 - MER113 DNA MER1_type? -306 215 1 684 244 48 35 chr11 36541515 36541826 -114241727 - L1ME4a LINE L1 -223 5898 5584 549 331 50 0 chr11 36542466 36542626 -114240927 + MER91A DNA MER1_type 2 169 -27 222 311 91 30 chr11 36543035 36543167 -114240386 - MIR3 SINE MIR -31 177 38 2475 53 3 0 chr11 36543179 36543478 -114240075 - AluY SINE Alu -11 300 1 292 299 0 0 chr11 36543910 36543987 -114239566 - MIR SINE MIR -100 162 86 390 324 27 7 chr11 36544323 36544471 -114239082 + MIR3 SINE MIR 17 167 -41 257 169 52 65 chr11 36544682 36544759 -114238794 - LTR33A LTR ERVL -4 519 444 499 300 104 41 chr11 36545132 36545449 -114238104 - MLT1I LTR MaLR 0 409 73 732 192 0 0 chr11 36547046 36547176 -114236377 + FLAM_A SINE Alu 4 133 0 197 254 34 34 chr11 36547348 36547407 -114236146 + L2 LINE L2 3250 3308 -5 207 0 0 0 chr11 36547552 36547575 -114235978 + (TG)n Simple_repeat Simple_repeat 2 24 0 1948 141 4 0 chr11 36547575 36547852 -114235701 - AluSx SINE Alu -34 278 1 412 274 95 12 chr11 36547956 36548124 -114235429 + MIR SINE MIR 58 239 -23 491 251 65 6 chr11 36548766 36548948 -114234605 + MIR SINE MIR 22 212 -50 225 0 0 0 chr11 36548998 36549023 -114234530 + (A)n Simple_repeat Simple_repeat 1 25 0 1522 64 10 0 chr11 36549252 36549455 -114234098 + L1PB1 LINE L1 5945 6149 -2 365 315 51 28 chr11 36549533 36549711 -114233842 + MIR SINE MIR 79 260 -2 299 273 218 0 chr11 36550054 36550164 -114233389 - L2 LINE L2 0 3272 3139 348 224 129 54 chr11 36550251 36550398 -114233155 + MIR3 SINE MIR 33 190 -18 543 272 11 17 chr11 36551045 36551225 -114232328 - LTR33 LTR ERVL -240 281 103 196 368 0 0 chr11 36551615 36551691 -114231862 - MIR SINE MIR -7 255 180 553 239 0 0 chr11 36552890 36552999 -114230554 - L2 LINE L2 0 3313 3205 233 275 154 0 chr11 36552999 36553090 -114230463 - MER91C DNA MER1_type 0 140 36 354 298 48 8 chr11 36553142 36553266 -114230287 - MIR SINE MIR -92 170 42 246 269 15 0 chr11 36556197 36556264 -114227289 + MIR SINE MIR 86 153 -109 378 249 133 93 chr11 36556421 36556563 -114226990 - L1ME4a LINE L1 -30 6091 5956 1609 161 44 3 chr11 36556563 36556861 -114226692 - L1MB3 LINE L1 -1 6182 5873 378 249 133 93 chr11 36556861 36556983 -114226570 - L1ME4a LINE L1 -165 5956 5840 2265 112 7 0 chr11 36556983 36557279 -114226274 - AluSx SINE Alu -14 298 1 378 249 133 93 chr11 36557279 36557510 -114226043 - L1ME4a LINE L1 -281 5840 5575 2371 86 0 43 chr11 36558742 36559067 -114224486 + AluSx SINE Alu 1 311 -1 29 28 0 0 chr11 36559458 36559494 -114224059 + AT_rich Low_complexity Low_complexity 1 36 0 417 315 59 5 chr11 36559506 36559709 -114223844 - L1MC5 LINE L1 -60 7901 7688 1707 151 28 47 chr11 36560112 36560429 -114223124 - AluSq SINE Alu -2 311 1 392 207 69 86 chr11 36560429 36560603 -114222950 - Charlie7 DNA MER1_type -8 2604 2434 250 194 15 30 chr11 36560590 36560657 -114222896 - Charlie7 DNA MER1_type -2512 100 35 * 482 308 76 0 chr11 36560692 36560864 -114222689 + MIR SINE MIR 1 185 -77 702 168 0 98 chr11 36562386 36562529 -114221024 - FLAM_C SINE Alu -4 129 1 2392 174 0 18 chr11 36563013 36563449 -114220104 + L1MB5 LINE L1 5747 6174 0 230 142 57 132 chr11 36563457 36563563 -114219990 + HAL1 LINE L1 100 197 -2310 2337 263 136 55 chr11 36563878 36565576 -114217977 + HAL1 LINE L1 592 2425 -82 467 255 88 57 chr11 36565580 36565772 -114217781 - MIR SINE MIR -62 200 3 3731 131 35 13 chr11 36565905 36566507 -114217046 + L1MB3 LINE L1 5370 5984 -199 1056 249 132 85 chr11 36566604 36567417 -114216136 - HAL1 LINE L1 -2 2505 1655 250 297 59 10 chr11 36567777 36567878 -114215675 - MIR SINE MIR -6 256 151 533 262 117 87 chr11 36567920 36568389 -114215164 - L2 LINE L2 -3 3310 2828 3987 191 29 27 chr11 36569661 36570097 -114213456 + MER63C DNA MER1_type 83 523 -537 853 223 13 44 chr11 36570097 36570326 -114213227 + MER58A DNA MER1_type 3 224 0 3987 191 29 27 chr11 36570326 36570711 -114212842 + MER63C DNA MER1_type 523 906 -24 235 323 47 8 chr11 36571737 36571864 -114211689 - L2 LINE L2 -9 3304 3173 * 1527 242 226 13 chr11 36571851 36572533 -114211020 - L2 LINE L2 -412 2902 2076 404 294 65 7 chr11 36572949 36573102 -114210451 + MIR SINE MIR 53 214 -48 1230 187 0 9 chr11 36573525 36573744 -114209809 + Tigger5 DNA MER2_type 2107 2323 0 356 238 24 0 chr11 36574123 36574207 -114209346 - LTR67 LTR ERVL -1 556 471 9618 192 66 64 chr11 36574207 36577332 -114206221 + L1MDa LINE L1 19 3157 -3383 351 235 109 17 chr11 36578379 36578498 -114205055 + MIR SINE MIR 11 140 -122 522 280 10 48 chr11 36579003 36579027 -114204526 + MIR SINE MIR 43 66 -196 1550 197 13 10 chr11 36579027 36579332 -114204221 + AluJb SINE Alu 1 306 -6 522 280 10 48 chr11 36579332 36579514 -114204039 + MIR SINE MIR 66 241 -21 368 292 31 37 chr11 36579763 36579924 -114203629 + MIR SINE MIR 32 191 -71 357 311 22 23 chr11 36580177 36580362 -114203191 + MIR SINE MIR 62 242 -20 241 262 187 0 chr11 36580366 36580473 -114203080 - MIR SINE MIR -55 207 81 780 174 41 23 chr11 36581029 36581201 -114202352 - MER5B DNA MER1_type -3 175 1 2158 125 6 10 chr11 36581380 36581693 -114201860 - AluSx SINE Alu 0 312 1 737 319 23 21 chr11 36582000 36582435 -114201118 + L2 LINE L2 2057 2492 -822 1950 147 3 0 chr11 36582562 36582854 -114200699 + AluSx SINE Alu 14 306 -6 2433 117 20 3 chr11 36583286 36583638 -114199915 - L1PA15 LINE L1 -5 6160 5803 652 169 18 54 chr11 36583725 36583891 -114199662 - MIR SINE MIR 0 262 103 330 238 93 113 chr11 36584826 36585137 -114198416 - L2 LINE L2 -1 3312 3008 490 243 39 70 chr11 36585491 36585695 -114197858 - MIR SINE MIR -19 243 43 180 325 25 50 chr11 36587034 36587154 -114196399 - L2 LINE L2 -13 3300 3184 322 257 22 40 chr11 36587216 36587400 -114196153 + MER20B DNA MER1_type 2 214 -5 441 0 0 0 chr11 36587801 36587850 -114195703 + (TG)n Simple_repeat Simple_repeat 2 50 0 199 250 0 0 chr11 36588174 36588226 -114195327 + L2 LINE L2 3262 3313 0 477 329 66 21 chr11 36588353 36588596 -114194957 - MIR SINE MIR 0 262 9 331 244 47 47 chr11 36588864 36588991 -114194562 - L2 LINE L2 -218 3054 2928 255 131 16 98 chr11 36589016 36589077 -114194476 - MADE1 DNA Mariner 0 80 25 953 241 118 28 chr11 36589848 36589901 -114193652 - MLT1K LTR MaLR -2 586 539 1253 39 11 11 chr11 36589901 36590079 -114193474 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 953 241 118 28 chr11 36590079 36590531 -114193022 - MLT1K LTR MaLR -49 539 6 2137 94 14 0 chr11 36590531 36590808 -114192745 + AluSc SINE Alu 29 309 0 439 299 22 15 chr11 36591039 36591173 -114192380 - L2 LINE L2 0 3272 3138 2358 78 7 3 chr11 36591318 36591612 -114191941 - AluY SINE Alu -16 295 1 688 235 42 42 chr11 36591666 36591883 -114191670 + L2 LINE L2 3094 3310 -3 307 207 0 0 chr11 36592015 36592073 -114191480 - L2 LINE L2 -2 3311 3254 924 158 61 6 chr11 36592210 36592375 -114191178 + MLT1A2 LTR MaLR 1 174 -200 369 86 0 0 chr11 36592376 36592434 -114191119 + (TC)n Simple_repeat Simple_repeat 1 58 0 267 318 32 61 chr11 36592454 36592734 -114190819 - MLT1K LTR MaLR -158 430 159 188 267 67 0 chr11 36592950 36593025 -114190528 + L2 LINE L2 2983 3062 -210 214 233 50 117 chr11 36593106 36593146 -114190407 - MIR SINE MIR -78 184 143 1344 198 124 58 chr11 36593146 36593580 -114189973 - MLT1C LTR MaLR 0 467 5 214 233 50 117 chr11 36593580 36593659 -114189894 - MIR SINE MIR -119 143 73 2146 127 3 16 chr11 36593849 36594165 -114189388 - AluSx SINE Alu 0 312 1 337 298 107 0 chr11 36594355 36594476 -114189077 - L2 LINE L2 0 3313 3180 1670 199 0 7 chr11 36594672 36594964 -114188589 + AluJo SINE Alu 1 290 -22 434 300 62 19 chr11 36595102 36595262 -114188291 + MIR SINE MIR 25 191 -71 558 228 117 17 chr11 36595314 36595494 -114188059 + MIR SINE MIR 21 218 -44 1743 183 5 37 chr11 36595622 36596000 -114187553 - L1MB3 LINE L1 -1 6182 5817 276 344 45 6 chr11 36596655 36596812 -114186741 + L1ME LINE L1 5704 5866 -255 1578 208 86 36 chr11 36596920 36597396 -114186157 - MLT1D LTR MaLR 0 505 6 240 211 0 0 chr11 36597480 36597532 -114186021 + L2 LINE L2 3262 3313 0 183 156 0 0 chr11 36598072 36598104 -114185449 + (CA)n Simple_repeat Simple_repeat 1 32 0 298 298 11 0 chr11 36598131 36598225 -114185328 - MER117 DNA MER1_type -101 96 2 669 101 0 0 chr11 36598530 36598629 -114184924 + L1PB1 LINE L1 6053 6151 0 2322 105 0 3 chr11 36598647 36598951 -114184602 + AluSq SINE Alu 1 303 -10 333 200 0 0 chr11 36599089 36599154 -114184399 + L2 LINE L2 3005 3069 -244 334 306 130 0 chr11 36599182 36599290 -114184263 + L2 LINE L2 3150 3271 -1 1777 184 0 7 chr11 36599579 36599883 -114183670 - AluSx SINE Alu -10 302 1 295 179 62 116 chr11 36600108 36600181 -114183372 - L2 LINE L2 -33 3280 3213 350 294 48 8 chr11 36600181 36600307 -114183246 - MER94 DNA DNA -1 133 3 295 179 62 116 chr11 36600307 36600345 -114183208 - L2 LINE L2 -100 3213 3175 277 315 90 0 chr11 36600345 36600434 -114183119 - MER91A DNA MER1_type -10 186 90 200 337 10 0 chr11 36600656 36600754 -114182799 - L2 LINE L2 -132 3181 3083 301 220 0 33 chr11 36600845 36600936 -114182617 - L2 LINE L2 -230 3083 2996 190 333 0 14 chr11 36601101 36601173 -114182380 - L2 LINE L2 -57 3215 3145 628 211 34 0 chr11 36601245 36601392 -114182161 + MER103 DNA DNA 13 164 -2 2481 80 0 0 chr11 36601493 36601795 -114181758 + AluY SINE Alu 1 302 -9 198 279 0 15 chr11 36602022 36602090 -114181463 + MIR SINE MIR 99 165 -97 551 212 142 66 chr11 36605583 36605809 -114177744 - MIR SINE MIR 0 262 20 1931 157 7 0 chr11 36606547 36606846 -114176707 + AluSx SINE Alu 1 301 -11 223 163 41 20 chr11 36606846 36606895 -114176658 + GA-rich Low_complexity Low_complexity 116 165 0 1354 5 0 43 chr11 36606896 36607084 -114176469 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 652 232 36 12 chr11 36607455 36607623 -114175930 + MIR SINE MIR 8 179 -83 229 69 0 0 chr11 36607933 36607962 -114175591 + HsTC2 DNA Tc2 33 61 -1837 771 209 16 16 chr11 36609465 36609647 -114173906 + MIR SINE MIR 80 261 -1 346 350 82 6 chr11 36610572 36610755 -114172798 + MIR SINE MIR 46 242 -20 786 224 34 6 chr11 36610818 36610997 -114172556 + MIR SINE MIR 7 190 -72 738 279 5 0 chr11 36611059 36611256 -114172297 - MIR SINE MIR -60 202 5 2377 92 0 0 chr11 36611785 36612077 -114171476 - AluSg SINE Alu -18 292 1 182 300 0 29 chr11 36612555 36612625 -114170928 - MIR3 SINE MIR -52 156 89 289 303 16 25 chr11 36613045 36613167 -114170386 - MIR SINE MIR -140 122 2 309 225 14 0 chr11 36614401 36614472 -114169081 - MIR3 SINE MIR -39 169 98 204 200 0 0 chr11 36614774 36614814 -114168739 - MIR SINE MIR -115 147 108 699 216 65 43 chr11 36616505 36616736 -114166817 - MER106A DNA MER1_type 0 236 1 253 226 83 12 chr11 36618379 36618463 -114165090 - MIR3 SINE MIR -11 197 108 183 42 0 0 chr11 36618758 36618782 -114164771 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 685 300 36 4 chr11 36618801 36619054 -114164499 - MIR SINE MIR 0 262 2 774 266 15 14 chr11 36619685 36619915 -114163638 + MIR SINE MIR 19 248 -14 2043 90 30 8 chr11 36620783 36621051 -114162502 - AluY SINE Alu -13 298 25 282 227 86 23 chr11 36621111 36621239 -114162314 - L1ME4a LINE L1 0 6515 6380 * 701 276 96 27 chr11 36621238 36621629 -114161924 - L1ME4a LINE L1 -948 5592 5181 259 279 84 45 chr11 36621811 36621990 -114161563 - MLT1J1 LTR MaLR -230 216 31 2610 302 48 19 chr11 36622016 36623449 -114160104 - L1ME4a LINE L1 -1347 5193 3719 882 184 5 38 chr11 36623468 36623680 -114159873 - L1MA7 LINE L1 -2 6289 6085 361 221 0 39 chr11 36623682 36623758 -114159795 + Tigger5 DNA MER2_type 6 78 -2245 368 167 0 0 chr11 36623758 36623818 -114159735 - Tigger5 DNA MER2_type -3 2320 2261 3217 165 25 7 chr11 36623865 36624436 -114159117 - L1MA7 LINE L1 -202 6089 5509 414 271 62 13 chr11 36624436 36624661 -114158892 - L1ME4a LINE L1 -2837 3703 3468 * 543 240 72 25 chr11 36624658 36624919 -114158634 - L1MDa LINE L1 -4974 1556 1276 1144 270 51 36 chr11 36625344 36625811 -114157742 + L2 LINE L2 2827 3300 -13 461 296 25 20 chr11 36625814 36626010 -114157543 - MIR SINE MIR -35 227 31 321 280 117 37 chr11 36626853 36627067 -114156486 + MIR SINE MIR 20 250 -12 228 262 41 57 chr11 36627323 36627397 -114156156 - MER5A DNA MER1_type -69 120 47 1882 192 28 3 chr11 36627397 36627751 -114155802 + MLT1A1 LTR MaLR 1 363 -2 228 262 41 57 chr11 36627751 36627798 -114155755 - MER5A DNA MER1_type -142 47 1 192 266 31 0 chr11 36628075 36628139 -114155414 + MIR SINE MIR 79 144 -64 671 258 80 15 chr11 36628174 36628498 -114155055 - LTR33A LTR ERVL -2 521 139 213 322 41 16 chr11 36628507 36628628 -114154925 + MIR3 SINE MIR 78 201 -7 229 250 105 53 chr11 36629528 36629680 -114153873 + MER5A DNA MER1_type 2 161 -28 744 260 100 51 chr11 36629769 36630129 -114153424 - L1ME LINE L1 -390 5780 5398 2511 90 0 0 chr11 36630129 36630439 -114153114 - AluSq SINE Alu -3 310 1 744 260 100 51 chr11 36630439 36630467 -114153086 - L1ME LINE L1 -772 5398 5373 243 139 0 0 chr11 36631101 36631137 -114152416 - U2 snRNA snRNA -152 36 1 704 278 9 48 chr11 36633108 36633338 -114150215 - MIR SINE MIR -19 243 23 264 307 183 0 chr11 36633364 36633501 -114150052 + MER5A DNA MER1_type 28 189 0 966 117 394 0 chr11 36633549 36633762 -114149791 - L1PA11 LINE L1 0 6174 5878 392 326 8 0 chr11 36633897 36634029 -114149524 + MIR SINE MIR 17 149 -59 542 324 21 29 chr11 36634631 36634869 -114148684 - MIR SINE MIR -13 249 14 271 245 77 49 chr11 36634956 36635099 -114148454 - MER5B DNA MER1_type -6 172 26 1799 164 10 10 chr11 36635449 36635742 -114147811 + AluSx SINE Alu 1 293 -19 504 249 41 22 chr11 36635876 36636240 -114147313 + MER113 DNA MER1_type? 45 475 -46 402 194 23 132 chr11 36636270 36636399 -114147154 + L2 LINE L2 3189 3303 -10 198 71 0 0 chr11 36636961 36636989 -114146564 + (TAA)n Simple_repeat Simple_repeat 1 28 0 270 338 66 10 chr11 36637725 36637923 -114145630 - L2 LINE L2 -390 2924 2716 341 238 10 20 chr11 36638378 36638479 -114145074 + MIR SINE MIR 46 145 -63 211 220 0 0 chr11 36638667 36638717 -114144836 + (TA)n Simple_repeat Simple_repeat 2 51 0 702 289 189 3 chr11 36638827 36639177 -114144376 - L1MC4a LINE L1 -1884 5924 5510 2028 142 0 0 chr11 36639218 36639506 -114144047 - AluSx SINE Alu -22 290 3 2350 101 3 0 chr11 36639516 36639814 -114143739 - AluSp SINE Alu -14 299 1 393 289 21 59 chr11 36640719 36640906 -114142647 - MIR SINE MIR -51 211 32 534 281 65 10 chr11 36641766 36641965 -114141588 + MIR SINE MIR 49 258 -4 353 231 164 0 chr11 36641995 36642099 -114141454 - MIR SINE MIR -113 149 29 557 226 172 10 chr11 36642466 36642670 -114140883 + MIR SINE MIR 12 248 -14 366 238 89 0 chr11 36642962 36643063 -114140490 - MIR SINE MIR -74 188 79 545 192 96 0 chr11 36643106 36643210 -114140343 + MER81 DNA DNA 1 114 0 264 313 80 0 chr11 36643533 36643645 -114139908 + L2 LINE L2 3186 3306 -7 362 224 48 16 chr11 36643961 36644086 -114139467 + MER113 DNA MER1_type? 6 134 -387 202 179 36 18 chr11 36644404 36644460 -114139093 + CT-rich Low_complexity Low_complexity 1 57 0 523 304 19 39 chr11 36646369 36646626 -114136927 + MIR SINE MIR 11 262 0 2370 98 6 13 chr11 36646693 36647008 -114136545 - AluSq SINE Alu 0 313 1 297 285 66 0 chr11 36647125 36647262 -114136291 - MIR SINE MIR -6 256 111 188 265 108 48 chr11 36647644 36647727 -114135826 - MER5A DNA MER1_type -68 121 34 987 121 55 55 chr11 36647928 36648081 -114135472 + L1MA8 LINE L1 6064 6219 -72 243 0 0 0 chr11 36648081 36648108 -114135445 + (TG)n Simple_repeat Simple_repeat 2 28 0 987 121 55 55 chr11 36648108 36648153 -114135400 + L1MA8 LINE L1 6218 6262 -29 313 175 0 25 chr11 36648141 36648221 -114135332 + L1MA8 LINE L1 6213 6290 -1 * 218 189 0 0 chr11 36648683 36648720 -114134833 + (TG)n Simple_repeat Simple_repeat 2 38 0 586 0 27 0 chr11 36650079 36650153 -114133400 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 2068 129 14 0 chr11 36654586 36654880 -114128673 - AluSx SINE Alu -14 298 1 313 253 140 27 chr11 36656356 36656506 -114127047 + MIR3 SINE MIR 30 196 -12 599 245 46 15 chr11 36658286 36658482 -114125071 + MIR SINE MIR 17 218 -44 306 0 0 0 chr11 36658607 36658641 -114124912 + (TG)n Simple_repeat Simple_repeat 1 34 0 1073 212 108 19 chr11 36659184 36659490 -114124063 + Charlie4a DNA MER1_type 1 333 -175 485 116 0 70 chr11 36659490 36659547 -114124006 - MADE1 DNA Mariner 0 80 29 1489 113 52 9 chr11 36659547 36659759 -114123794 + AluSg/x SINE Alu 85 305 -7 485 116 0 70 chr11 36659759 36659787 -114123766 - MADE1 DNA Mariner -51 29 1 * 563 203 55 39 chr11 36659787 36659963 -114123590 + Charlie4a DNA MER1_type 329 507 -1 201 284 59 39 chr11 36660127 36660229 -114123324 - MIR SINE MIR 0 262 159 1017 211 0 0 chr11 36660325 36660500 -114123053 + MER45A DNA AcHobo 4 178 0 507 246 123 0 chr11 36661780 36661951 -114121602 + MIR SINE MIR 70 261 -1 2130 141 0 3 chr11 36662527 36662832 -114120721 - AluSx SINE Alu -8 304 1 413 243 18 36 chr11 36664287 36664398 -114119155 + L2 LINE L2 3156 3264 -8 189 250 0 0 chr11 36666222 36666282 -114117271 + (TA)n Simple_repeat Simple_repeat 1 60 0 562 258 78 46 chr11 36666424 36666641 -114116912 + MIR SINE MIR 38 261 -1 1091 88 0 0 chr11 36666949 36667086 -114116467 - AluSp/q SINE Alu -8 305 169 712 271 57 28 chr11 36667657 36667904 -114115649 - MIR SINE MIR -1 261 8 393 309 82 47 chr11 36667988 36668221 -114115332 - MIR SINE MIR -2 260 20 2491 67 13 0 chr11 36668253 36668552 -114115001 + AluSp SINE Alu 1 303 -10 2454 86 0 0 chr11 36669401 36669704 -114113849 - AluSx SINE Alu -9 303 1 284 251 230 21 chr11 36669884 36670075 -114113478 - MIR SINE MIR -30 232 2 626 165 63 0 chr11 36670109 36670236 -114113317 + MER20 DNA MER1_type 85 219 0 293 250 67 50 chr11 36670596 36670716 -114112837 - MIR SINE MIR -118 144 23 349 313 59 74 chr11 36671508 36671764 -114111789 - MIR SINE MIR -9 253 2 192 153 106 71 chr11 36672227 36672312 -114111241 - MIR3 SINE MIR -7 201 114 510 241 94 49 chr11 36672360 36672584 -114110969 - MIR SINE MIR -1 261 28 381 195 24 0 chr11 36672788 36672870 -114110683 + L2 LINE L2 3230 3313 0 303 93 0 0 chr11 36674568 36674611 -114108942 + (TG)n Simple_repeat Simple_repeat 1 43 0 457 175 0 0 chr11 36676285 36676365 -114107188 + MER5A DNA MER1_type 27 106 -83 303 28 0 0 chr11 36677530 36677566 -114105987 + (TG)n Simple_repeat Simple_repeat 2 37 0 232 174 22 0 chr11 36677569 36677615 -114105938 + GA-rich Low_complexity Low_complexity 2 48 0 212 77 26 0 chr11 36678541 36678580 -114104973 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 406 195 195 0 chr11 36679636 36679764 -114103789 - MIR SINE MIR -6 256 104 210 118 0 0 chr11 36679840 36679874 -114103679 + (TA)n Simple_repeat Simple_repeat 2 35 0 211 162 0 0 chr11 36680098 36680135 -114103418 - L3b LINE CR1 -14 1569 1533 * 355 242 32 73 chr11 36680109 36680233 -114103320 - MIR3 SINE MIR -29 179 61 27 29 0 0 chr11 36682610 36682644 -114100909 + AT_rich Low_complexity Low_complexity 1 34 0 219 103 0 0 chr11 36684634 36684673 -114098880 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 218 367 0 0 chr11 36684884 36684963 -114098590 - L3 LINE CR1 -107 1470 1392 1013 231 12 8 chr11 36686966 36687208 -114096345 + MIR SINE MIR 6 248 -14 396 71 0 0 chr11 36687529 36687585 -114095968 + (CA)n Simple_repeat Simple_repeat 2 57 0 484 261 104 31 chr11 36687894 36688316 -114095237 + L2 LINE L2 2731 3313 0 1996 138 0 0 chr11 36689000 36689276 -114094277 + AluJb SINE Alu 21 296 -16 499 296 6 45 chr11 36689700 36689876 -114093677 + MIR3 SINE MIR 40 208 0 1078 156 52 28 chr11 36691264 36691476 -114092077 - MER20 DNA MER1_type 0 219 3 350 297 110 0 chr11 36693544 36693662 -114089891 + L2 LINE L2 3142 3272 0 209 200 0 0 chr11 36694208 36694248 -114089305 - L2 LINE L2 -9 3263 3224 773 310 101 20 chr11 36694855 36695468 -114088085 - L2 LINE L2 -5 3308 2654 438 284 34 25 chr11 36695646 36695850 -114087703 - MIR SINE MIR 0 262 57 201 74 0 0 chr11 36695945 36695972 -114087581 + (CA)n Simple_repeat Simple_repeat 2 28 0 564 219 8 0 chr11 36695985 36696104 -114087449 + MER103 DNA DNA 44 163 -3 830 203 16 6 chr11 36696434 36696616 -114086937 - MER3 DNA MER1_type -25 184 1 297 315 45 0 chr11 36697179 36697290 -114086263 + L2 LINE L2 2910 3025 -288 1038 118 0 0 chr11 36697419 36697563 -114085990 + LTR8 LTR ERV1 443 586 -105 273 29 0 0 chr11 36697714 36697748 -114085805 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 242 326 121 0 chr11 36698047 36698179 -114085374 + MIR SINE MIR 40 187 -75 2250 95 3 36 chr11 36698212 36698517 -114085036 - AluSp SINE Alu -17 296 2 333 293 160 24 chr11 36698534 36698746 -114084807 - MIR SINE MIR -21 241 1 275 130 19 0 chr11 36699504 36699558 -114083995 + (TG)n Simple_repeat Simple_repeat 2 56 0 1655 197 3 16 chr11 36700284 36700599 -114082954 - AluJo SINE Alu -1 311 1 368 275 35 42 chr11 36700629 36700774 -114082779 + MIR SINE MIR 1 151 -57 276 303 34 57 chr11 36700858 36701033 -114082520 + MIR3 SINE MIR 35 205 -3 390 258 197 34 chr11 36701332 36701510 -114082043 - MIR SINE MIR -8 254 48 228 224 138 46 chr11 36701996 36702148 -114081405 - HAL1b LINE L1 -5 1343 1178 854 267 89 35 chr11 36702253 36702770 -114080783 - HAL1b LINE L1 -187 1161 617 598 325 30 63 chr11 36702850 36703277 -114080276 + MLT1K LTR MaLR 103 515 -73 515 311 80 26 chr11 36704281 36705120 -114078433 + L1ME LINE L1 676 1558 -4522 880 229 18 0 chr11 36705640 36705810 -114077743 - FAM SINE Alu -1 174 2 489 160 47 38 chr11 36705920 36706026 -114077527 - L1MA8 LINE L1 -275 6016 5910 * 4395 162 43 7 chr11 36706024 36707137 -114076416 - L1MA8 LINE L1 -666 5625 4472 300 27 0 0 chr11 36707894 36707931 -114075622 + (TG)n Simple_repeat Simple_repeat 2 38 0 465 302 130 12 chr11 36708152 36708321 -114075232 + MIR SINE MIR 1 189 -73 442 281 16 0 chr11 36708325 36708446 -114075107 - L2 LINE L2 -2 3311 3189 275 148 56 0 chr11 36708447 36708501 -114075052 + MIR SINE MIR 194 250 -12 2073 219 73 38 chr11 36708688 36709194 -114074359 + MLT1F LTR MaLR 9 532 -10 2275 85 5 123 chr11 36709347 36709760 -114073793 + THE1B LTR MaLR 1 364 0 189 147 0 0 chr11 36710404 36710438 -114073115 + (TG)n Simple_repeat Simple_repeat 1 34 0 221 364 11 11 chr11 36710814 36710902 -114072651 - MIR SINE MIR -147 115 28 695 299 45 5 chr11 36711445 36711646 -114071907 + MIR SINE MIR 2 210 -52 424 277 0 0 chr11 36711650 36711751 -114071802 - MIR SINE MIR -6 256 156 520 266 149 16 chr11 36712268 36712456 -114071097 - MIR SINE MIR -10 252 40 22 35 0 0 chr11 36713730 36713759 -114069794 + AT_rich Low_complexity Low_complexity 1 29 0 240 241 38 0 chr11 36713854 36713933 -114069620 - L1ME4a LINE L1 -188 5933 5852 623 313 31 40 chr11 36713960 36714190 -114069363 - MIR SINE MIR -3 259 34 452 219 9 0 chr11 36714211 36714316 -114069237 + HsTC2 DNA Tc2 1788 1893 -5 241 45 23 23 chr11 36715247 36715291 -114068262 + (TA)n Simple_repeat Simple_repeat 1 44 0 301 336 46 0 chr11 36715597 36715728 -114067825 - L1ME4a LINE L1 -796 5548 5412 1253 87 34 10 chr11 36715728 36715935 -114067618 + L1MA8 LINE L1 6075 6286 -5 275 255 34 47 chr11 36716304 36716453 -114067100 - L1P LINE L1 -1059 5087 4941 312 48 0 0 chr11 36717225 36717267 -114066286 + (CA)n Simple_repeat Simple_repeat 1 42 0 765 309 123 9 chr11 36717739 36718196 -114065357 - L1ME LINE L1 -361 5870 5362 378 143 45 0 chr11 36718196 36718329 -114065224 + (TA)n Simple_repeat Simple_repeat 1 139 0 243 0 0 0 chr11 36718397 36718424 -114065129 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 343 162 9 171 chr11 36718437 36718548 -114065005 + MLT1A2 LTR MaLR 1 93 -281 893 91 8 0 chr11 36718567 36718699 -114064854 - L1PB1 LINE L1 -1 6150 6018 * 25844 27 2 0 chr11 36718696 36722559 -114060994 - L1PA2 LINE L1 0 6155 2289 4006 19 0 0 chr11 36722561 36723029 -114060524 + L1P LINE L1 4455 4922 -1224 * 11530 54 85 5 chr11 36723023 36724561 -114058992 - L1PA2 LINE L1 -4473 1673 12 440 303 59 53 chr11 36724558 36725070 -114058483 - L1ME LINE L1 -855 5360 4846 * 1123 296 70 30 chr11 36725099 36725957 -114057596 - L1ME LINE L1 -1459 4756 3865 8517 166 38 26 chr11 36725992 36727761 -114055792 - L1 LINE L1 -1185 4961 3166 3181 132 0 34 chr11 36727761 36728291 -114055262 - L1PA15 LINE L1 -15 6150 5639 8517 166 38 26 chr11 36728291 36728390 -114055163 - L1 LINE L1 -2980 3166 3070 935 304 86 40 chr11 36728776 36729171 -114054382 + LTR16A1 LTR ERVL 45 457 0 24 32 0 0 chr11 36729454 36729485 -114054068 + AT_rich Low_complexity Low_complexity 1 31 0 2037 127 0 3 chr11 36729665 36729956 -114053597 - AluSg SINE Alu -20 290 1 1091 251 38 34 chr11 36730009 36730427 -114053126 - L1ME LINE L1 -2329 3886 3467 1839 97 25 18 chr11 36730432 36730710 -114052843 + L1PB1 LINE L1 5867 6146 -5 28 0 0 0 chr11 36730710 36730738 -114052815 + AT_rich Low_complexity Low_complexity 1 28 0 1638 199 0 7 chr11 36730740 36731031 -114052522 + AluJb SINE Alu 3 291 -21 240 88 53 0 chr11 36731038 36731095 -114052458 + (TA)n Simple_repeat Simple_repeat 1 60 0 6977 134 12 4 chr11 36731218 36732949 -114050604 - L1MA2 LINE L1 -5 7718 5974 6200 179 111 59 chr11 36732950 36734452 -114049101 + MER52A LTR ERV1 269 1755 0 10479 180 61 13 chr11 36734453 36739483 -114044070 - L1MA2 LINE L1 -1586 5979 19 2698 221 44 35 chr11 36739500 36740504 -114043049 - L1MEc LINE L1 -2868 3347 2366 2164 122 3 0 chr11 36740504 36740798 -114042755 - AluSq SINE Alu -18 295 1 2698 221 44 35 chr11 36740798 36740851 -114042702 - L1MEc LINE L1 -3849 2366 2315 506 213 44 50 chr11 36741536 36741765 -114041788 - L1MEc LINE L1 -3921 2322 2070 1878 281 86 27 chr11 36741858 36743097 -114040456 - L1MEc LINE L1 -4460 1936 625 1792 168 139 13 chr11 36743326 36743706 -114039847 + MSTA LTR MaLR 1 428 0 9760 135 5 40 chr11 36743708 36745336 -114038217 + MSTA-int LTR MaLR 3 1573 -7 1651 184 149 11 chr11 36745342 36745718 -114037835 + MSTA LTR MaLR 1 428 0 495 360 85 6 chr11 36745744 36746072 -114037481 - L1MEc LINE L1 -6013 383 30 219 315 0 0 chr11 36746077 36746131 -114037422 - MER5B DNA MER1_type -123 55 2 225 0 0 0 chr11 36746591 36746616 -114036937 + (TTG)n Simple_repeat Simple_repeat 3 27 0 804 273 64 29 chr11 36746716 36747027 -114036526 + MER102b DNA MER1_type 11 332 -9 1672 249 48 11 chr11 36747564 36748175 -114035378 + L1ME2 LINE L1 4156 4788 -1358 2272 172 26 28 chr11 36748177 36748636 -114034917 - MLT1C LTR MaLR -2 465 8 595 217 12 42 chr11 36748643 36748809 -114034744 + L1ME2 LINE L1 4784 4944 -1202 1142 256 61 65 chr11 36748811 36749288 -114034265 + L1ME2 LINE L1 5671 6145 -19 3886 251 114 43 chr11 36749589 36751451 -114032102 - L2 LINE L2 -2 3311 1330 498 244 46 0 chr11 36751704 36751835 -114031718 - L1ME LINE L1 -400 5721 5585 2111 268 70 24 chr11 36752172 36752759 -114030794 + MER115 DNA AcHobo 57 670 -23 196 287 219 56 chr11 36753204 36753507 -114030046 - L2 LINE L2 -76 3196 2848 270 316 38 87 chr11 36753528 36753816 -114029737 + L2 LINE L2 3034 3307 -6 2545 59 0 0 chr11 36753818 36754122 -114029431 + AluY SINE Alu 1 304 -7 211 189 0 0 chr11 36754133 36754170 -114029383 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 294 349 54 108 chr11 36754316 36754631 -114028922 - L2 LINE L2 -9 3263 2966 2686 87 0 3 chr11 36754808 36755164 -114028389 - THE1A LTR MaLR 0 355 1 955 311 103 38 chr11 36755293 36756214 -114027339 + L1MEd LINE L1 268 1257 -4862 364 304 72 58 chr11 36756239 36756446 -114027107 + HAL1 LINE L1 1397 1606 -901 1457 249 31 0 chr11 36756464 36756781 -114026772 + L1M4b LINE L1 2 328 -6531 993 144 33 28 chr11 36756782 36756962 -114026591 + MLT1D LTR MaLR 1 181 -324 968 256 69 32 chr11 36756987 36757505 -114026048 + L1ME LINE L1 5157 5702 -468 655 291 100 9 chr11 36757623 36757843 -114025710 + MIR SINE MIR 23 262 0 334 321 80 59 chr11 36758034 36758221 -114025332 + MIR SINE MIR 8 198 -64 321 268 12 89 chr11 36758665 36758833 -114024720 - MIR SINE MIR -43 219 65 6171 183 23 15 chr11 36759245 36761391 -114022162 - L1PA16 LINE L1 0 6166 4004 3840 180 11 10 chr11 36761394 36762177 -114021376 + L1PA16 LINE L1 3242 4025 -2121 370 178 22 0 chr11 36763092 36763182 -114020371 + (TG)n Simple_repeat Simple_repeat 1 92 0 222 37 0 0 chr11 36764471 36764498 -114019055 + (CA)n Simple_repeat Simple_repeat 2 28 0 2412 95 0 0 chr11 36764648 36764953 -114018600 + AluY SINE Alu 1 305 -6 700 215 44 57 chr11 36765318 36765536 -114018017 - MIR SINE MIR -46 216 3 237 156 31 16 chr11 36765826 36765890 -114017663 + (TA)n Simple_repeat Simple_repeat 2 66 0 2536 189 99 32 chr11 36765904 36766115 -114017438 + MLT1E2 LTR MaLR 2 198 -428 1714 117 4 0 chr11 36766115 36766346 -114017207 + AluSg/x SINE Alu 69 300 -10 2536 189 99 32 chr11 36766346 36766720 -114016833 + MLT1E2 LTR MaLR 198 626 0 392 282 64 39 chr11 36767012 36767323 -114016230 + MLT1I LTR MaLR 46 407 -2 457 313 45 8 chr11 36767611 36767745 -114015808 - MIR SINE MIR -95 167 29 184 105 26 53 chr11 36768049 36768087 -114015466 - L2 LINE L2 -685 2629 2593 278 281 158 26 chr11 36768608 36768722 -114014831 + MIR SINE MIR 23 151 -111 27737 118 18 72 chr11 36768781 36773788 -114009765 + L1P LINE L1 9 4749 -1397 1172 196 67 25 chr11 36774446 36774686 -114008867 + MLT1C LTR MaLR 170 419 -48 343 227 23 0 chr11 36774705 36774793 -114008760 - L1MC4 LINE L1 -1339 6703 6614 239 202 0 101 chr11 36774763 36774862 -114008691 - L1MC4 LINE L1 -1339 6703 6615 * 278 284 23 0 chr11 36774837 36774925 -114008628 + L1MC4 LINE L1 6614 6703 -1339 282 239 0 43 chr11 36775040 36775132 -114008421 - L1MC4 LINE L1 -1340 6702 6615 * 313 271 0 21 chr11 36775052 36775148 -114008405 + L1MC4 LINE L1 6615 6708 -1334 524 269 95 87 chr11 36775238 36775377 -114008176 - L1ME4a LINE L1 0 6121 5985 2023 139 0 17 chr11 36775377 36775679 -114007874 - AluSx SINE Alu -15 297 1 524 269 95 87 chr11 36775679 36776023 -114007530 - L1ME4a LINE L1 -136 5985 5634 231 232 18 0 chr11 36776030 36776086 -114007467 - L1ME LINE L1 -448 5673 5617 1626 153 53 0 chr11 36776283 36776545 -114007008 + AluJo SINE Alu 14 289 -23 207 69 0 0 chr11 36776548 36776577 -114006976 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 23 0 0 0 chr11 36777037 36777060 -114006493 + AT_rich Low_complexity Low_complexity 1 23 0 242 270 0 32 chr11 36777080 36777143 -114006410 + L2 LINE L2 3207 3267 -5 1952 244 73 67 chr11 36777385 36778271 -114005282 + HAL1 LINE L1 1603 2494 -13 217 255 0 0 chr11 36778908 36778959 -114004594 - MIR SINE MIR 0 262 212 782 178 97 0 chr11 36779073 36779258 -114004295 - MIR SINE MIR -43 219 17 2798 37 46 0 chr11 36779307 36779635 -114003918 - L1PA4 LINE L1 -8 6147 5805 622 276 124 54 chr11 36780161 36780548 -114003005 + L2 LINE L2 2814 3227 -86 2230 148 3 0 chr11 36781245 36781575 -114001978 + MER7A DNA MER2_type 18 346 0 310 267 22 0 chr11 36782161 36782251 -114001302 + GA-rich Low_complexity Low_complexity 3 94 0 449 318 85 76 chr11 36783274 36783602 -113999951 + L2 LINE L2 2847 3182 -90 1915 124 33 0 chr11 36783602 36783903 -113999650 - AluSx SINE Alu 0 310 1 449 318 85 76 chr11 36783903 36783995 -113999558 + L2 LINE L2 3182 3272 0 24 0 0 0 chr11 36784227 36784251 -113999302 + AT_rich Low_complexity Low_complexity 1 24 0 381 279 16 16 chr11 36784343 36784465 -113999088 - MIR SINE MIR -35 227 106 436 256 25 16 chr11 36784561 36784682 -113998871 - MIR3 SINE MIR -43 165 44 266 301 12 0 chr11 36785246 36785329 -113998224 - MIR SINE MIR -19 243 160 1437 158 58 70 chr11 36785348 36785676 -113997877 - L1ME1 LINE L1 -4 6162 5839 382 312 85 3 chr11 36785692 36785826 -113997727 - MIR SINE MIR -56 152 4 617 242 154 6 chr11 36786190 36786372 -113997181 + MIR SINE MIR 43 251 -11 341 240 27 0 chr11 36786484 36786559 -113996994 - L2 LINE L2 -5 3308 3232 21 37 0 56 chr11 36786621 36786675 -113996878 + AT_rich Low_complexity Low_complexity 1 51 0 189 74 0 0 chr11 36786683 36786710 -113996843 + (TA)n Simple_repeat Simple_repeat 2 28 0 307 273 152 36 chr11 36786710 36786875 -113996678 - MIR SINE MIR -33 229 46 201 125 100 0 chr11 36786987 36787027 -113996526 - MER91B DNA MER1_type -117 73 30 881 146 0 31 chr11 36787552 36787682 -113995871 + FLAM_A SINE Alu 2 127 -6 807 245 159 0 chr11 36787822 36788112 -113995441 - MER119 DNA MER1_type 0 583 248 272 251 50 82 chr11 36788260 36788425 -113995128 - MLT1L LTR MaLR -221 394 173 1975 148 83 15 chr11 36788425 36788750 -113994803 + MER7A DNA MER2_type 2 346 0 272 251 50 82 chr11 36788750 36788810 -113994743 - MLT1L LTR MaLR -442 173 113 283 298 96 69 chr11 36789124 36789312 -113994241 - L2 LINE L2 -346 2968 2776 331 308 118 51 chr11 36789534 36789771 -113993782 + MLT1K LTR MaLR 329 581 -7 242 244 0 0 chr11 36790304 36790349 -113993204 + MIR SINE MIR 78 122 -86 298 177 48 0 chr11 36790380 36790442 -113993111 - MIR SINE MIR -1 261 197 367 323 8 15 chr11 36790546 36790676 -113992877 - MIR3 SINE MIR -36 172 44 621 316 103 19 chr11 36790680 36791351 -113992202 + L1ME LINE L1 4364 5090 -1056 280 296 71 40 chr11 36791563 36791789 -113991764 + L1ME LINE L1 5384 5616 -554 * 40242 40 1 2 chr11 36791787 36796562 -113986991 - L1P LINE L1 -1367 4779 8 13654 199 24 18 chr11 36796560 36802274 -113981279 - L1 LINE L1 -1193 5974 189 * 5370 189 33 32 chr11 36802271 36803085 -113980468 - L1PA13 LINE L1 -4257 2540 1702 * 2392 103 0 0 chr11 36803085 36803396 -113980157 + AluY SINE Alu 1 311 0 5370 189 33 32 chr11 36803396 36803888 -113979665 - L1PA13 LINE L1 -5095 1702 1212 448 309 31 0 chr11 36804290 36804452 -113979101 - MIR SINE MIR -22 240 74 763 228 32 0 chr11 36806248 36806406 -113977147 - MIR SINE MIR -14 248 86 792 240 99 8 chr11 36806555 36806797 -113976756 - L1ME3A LINE L1 -25 6145 5882 1741 232 22 74 chr11 36806797 36807349 -113976204 - MER65B LTR ERV1 -6 525 3 1036 249 27 7 chr11 36807351 36807665 -113975888 - L1ME3A LINE L1 -279 5885 5550 445 233 19 13 chr11 36807662 36807821 -113975732 - L1ME3A LINE L1 -984 5162 5003 * 21 0 0 0 chr11 36807824 36807845 -113975708 + AT_rich Low_complexity Low_complexity 1 21 0 4642 141 21 0 chr11 36807876 36808728 -113974825 - L1MA8 LINE L1 -199 6092 5225 1613 158 108 9 chr11 36808728 36809044 -113974509 - MER47A DNA MER2_type 0 366 20 11303 182 35 12 chr11 36809050 36809950 -113973603 - L1MA8 LINE L1 -924 5222 4344 2270 102 0 0 chr11 36809950 36810245 -113973308 + AluSg SINE Alu 1 295 -15 11303 182 35 12 chr11 36810245 36811902 -113971651 - L1MA8 LINE L1 -1802 4344 2607 886 260 94 55 chr11 36811912 36812516 -113971037 - L1ME3A LINE L1 -1145 5001 4374 4761 141 4 4 chr11 36812525 36812931 -113970622 - L1PA16 LINE L1 -9 6157 5752 2706 17 0 0 chr11 36812931 36813231 -113970322 - AluYb8 SINE Alu 0 318 19 4761 141 4 4 chr11 36813231 36813809 -113969744 - L1PA16 LINE L1 -413 5753 5145 2149 209 18 27 chr11 36813817 36814187 -113969366 - L1 LINE L1 -1860 4286 3921 2604 48 7 3 chr11 36814187 36814496 -113969057 + AluY SINE Alu 1 310 -1 2149 209 18 27 chr11 36814496 36814674 -113968879 - L1 LINE L1 -2225 3921 3743 21 95 0 0 chr11 36814674 36814737 -113968816 + AT_rich Low_complexity Low_complexity 1 63 0 299 273 34 0 chr11 36814737 36814825 -113968728 + MIR SINE MIR 172 262 0 205 250 50 38 chr11 36815981 36816061 -113967492 - L2 LINE L2 -8 3305 3225 717 279 85 0 chr11 36816071 36816272 -113967281 - MIR SINE MIR -30 232 15 946 200 63 5 chr11 36816464 36816669 -113966884 - MER20 DNA MER1_type 0 219 3 7229 250 51 14 chr11 36816756 36819481 -113964072 + L1ME2 LINE L1 2645 5464 -702 212 268 0 36 chr11 36819570 36819626 -113963927 + MER5A DNA MER1_type 52 105 -84 755 248 86 13 chr11 36820196 36820430 -113963123 + MIR SINE MIR 7 257 -5 513 0 0 0 chr11 36820618 36820675 -113962878 + (TG)n Simple_repeat Simple_repeat 2 58 0 239 317 112 24 chr11 36821438 36821643 -113961910 + L2 LINE L2 2549 2771 -543 735 268 122 68 chr11 36821743 36821922 -113961631 + MLT1H1 LTR MaLR 22 190 -365 2389 96 0 0 chr11 36821922 36822225 -113961328 - AluSg SINE Alu -3 307 5 735 268 122 68 chr11 36822225 36822584 -113960969 + MLT1H1 LTR MaLR 190 551 -4 240 356 47 54 chr11 36822658 36822807 -113960746 + L2 LINE L2 2932 3079 -193 292 143 0 0 chr11 36822810 36822859 -113960694 - L2 LINE L2 -3 3310 3262 296 346 65 9 chr11 36822960 36823067 -113960486 + L2 LINE L2 3160 3272 0 850 184 14 63 chr11 36823754 36823977 -113959576 + MER20 DNA MER1_type 8 219 0 677 188 169 6 chr11 36823985 36824145 -113959408 - MER5A DNA MER1_type 0 189 4 408 338 12 12 chr11 36825103 36825263 -113958290 - MIR SINE MIR -1 261 102 336 306 53 71 chr11 36825668 36825838 -113957715 - MIR3 SINE MIR -35 173 7 1609 246 30 16 chr11 36826471 36827001 -113956552 + L1ME2 LINE L1 5619 6162 0 335 192 29 39 chr11 36827037 36827141 -113956412 + L1MC5 LINE L1 7815 7917 -44 239 260 0 0 chr11 36827948 36827998 -113955555 - L2 LINE L2 -8 3264 3215 1282 127 0 85 chr11 36828000 36828170 -113955383 + THE1C LTR MaLR 3 150 -225 2172 113 0 0 chr11 36828170 36828476 -113955077 - AluY SINE Alu 0 306 1 1282 127 0 85 chr11 36828476 36828540 -113955013 + THE1C LTR MaLR 150 218 -157 9058 109 47 8 chr11 36828540 36829939 -113953614 + THE1C-int LTR MaLR 128 1580 0 301 71 0 0 chr11 36829957 36829999 -113953554 - THE1C LTR MaLR -332 43 2 * 2367 121 28 0 chr11 36829963 36830327 -113953226 + THE1C LTR MaLR 2 375 0 244 247 37 49 chr11 36830328 36830409 -113953144 - L2 LINE L2 -54 3259 3180 345 304 22 0 chr11 36830514 36830606 -113952947 - MIR3 SINE MIR -42 166 73 255 307 57 21 chr11 36831163 36831303 -113952250 + L2 LINE L2 2698 2842 -472 273 279 139 16 chr11 36831414 36831543 -113952010 - L2 LINE L2 -4 3309 3165 572 316 131 33 chr11 36831582 36831911 -113951642 - L2 LINE L2 -354 2960 2574 464 245 28 0 chr11 36831911 36832017 -113951536 + MER81 DNA DNA 5 113 -1 572 316 131 33 chr11 36832017 36832137 -113951416 - L2 LINE L2 -740 2574 2467 491 271 86 7 chr11 36832596 36832747 -113950806 + MIR SINE MIR 35 197 -65 566 314 39 39 chr11 36832929 36833184 -113950369 + MIR SINE MIR 5 259 -3 2458 226 6 3 chr11 36833386 36834033 -113949520 - L1 LINE L1 -800 5346 4698 1930 208 4 0 chr11 36834033 36834494 -113949059 + L1 LINE L1 4253 4715 -1431 * 9653 201 25 4 chr11 36834493 36836969 -113946584 - L1P5 LINE L1 -666 5490 2970 182 298 0 0 chr11 36837094 36837141 -113946412 - MIR SINE MIR -21 241 195 242 344 107 0 chr11 36837179 36837310 -113946243 - MIR SINE MIR -10 252 108 190 265 0 0 chr11 36840185 36840234 -113943319 - L2 LINE L2 0 3313 3265 500 290 14 59 chr11 36840263 36840436 -113943117 + MIR SINE MIR 12 180 -63 628 335 143 22 chr11 36840809 36840904 -113942649 - L2 LINE L2 0 3313 3231 2886 161 14 43 chr11 36840904 36841480 -113942073 - MER89 LTR ERV1 0 559 1 628 335 143 22 chr11 36841480 36841852 -113941701 - L2 LINE L2 -82 3231 2791 533 282 52 85 chr11 36841854 36842255 -113941298 - L2 LINE L2 -636 2678 2291 2116 118 13 16 chr11 36842454 36842758 -113940795 + AluSx SINE Alu 10 312 0 1190 261 56 56 chr11 36842962 36843426 -113940127 + L2 LINE L2 1371 1834 -1480 555 246 7 0 chr11 36843441 36843579 -113939974 - L1ME1 LINE L1 -7 6159 6021 7354 196 38 14 chr11 36843584 36845533 -113938020 + L1M3f LINE L1 7 1907 -4421 2686 45 0 0 chr11 36845533 36845841 -113937712 + AluY SINE Alu 1 308 -3 7354 196 38 14 chr11 36845841 36847973 -113935580 + L1M3f LINE L1 1907 4172 -2156 460 82 0 14 chr11 36847973 36848046 -113935507 - HSMAR1 DNA Mariner -1215 72 1 655 274 53 10 chr11 36848098 36848306 -113935247 + L2 LINE L2 2533 2749 -565 274 211 39 39 chr11 36848306 36848434 -113935119 + L1MC5 LINE L1 7404 7531 -430 241 290 37 65 chr11 36848510 36848724 -113934829 + L1ME3A LINE L1 5962 6169 -1 545 280 96 85 chr11 36848726 36849227 -113934326 + L2 LINE L2 2737 3248 -65 1162 197 18 4 chr11 36849227 36849455 -113934098 - REP3 LTR ERV -11 551 321 2234 122 19 25 chr11 36849455 36849816 -113933737 - THE1B LTR MaLR 0 364 6 11882 90 5 1 chr11 36849816 36851389 -113932164 - THE1B-int LTR MaLR 0 1580 1 2157 120 21 51 chr11 36851389 36851764 -113931789 - THE1B LTR MaLR 0 364 1 1382 239 15 18 chr11 36851764 36852090 -113931463 - REP3 LTR ERV -237 325 1 274 253 0 84 chr11 36852202 36852297 -113931256 + MIR SINE MIR 14 100 -162 24 32 0 0 chr11 36852337 36852368 -113931185 + AT_rich Low_complexity Low_complexity 1 31 0 769 280 32 0 chr11 36852622 36852811 -113930742 - MIR SINE MIR -57 205 11 1152 22 0 0 chr11 36852889 36853023 -113930530 - AluY SINE Alu -3 308 175 341 265 141 21 chr11 36853065 36853265 -113930288 - L1ME LINE L1 -341 5780 5563 276 222 8 128 chr11 36853298 36853415 -113930138 - MER5A DNA MER1_type -69 120 18 607 304 172 37 chr11 36853573 36854310 -113929243 - L2 LINE L2 -37 3276 2454 214 349 0 0 chr11 36854345 36854408 -113929145 + MIR SINE MIR 56 118 -90 316 293 90 113 chr11 36854472 36854728 -113928825 - L2 LINE L2 -5 3267 3018 191 302 89 49 chr11 36855913 36856100 -113927453 + MIR SINE MIR 31 219 -43 271 331 81 24 chr11 36856248 36856372 -113927181 + MIR3 SINE MIR 63 193 -15 334 347 21 14 chr11 36856566 36856710 -113926843 - MIR3 SINE MIR -35 173 29 275 287 117 0 chr11 36856878 36856972 -113926581 + MIR SINE MIR 29 133 -129 1061 328 47 36 chr11 36858678 36859144 -113924409 + MLT1K LTR MaLR 54 524 -64 392 179 37 52 chr11 36859468 36859572 -113923981 + MER5A DNA MER1_type 4 105 -84 221 301 72 0 chr11 36859760 36859843 -113923710 - MIR SINE MIR -116 146 58 2864 225 45 20 chr11 36859859 36860790 -113922763 + L1ME1 LINE L1 5056 6014 -152 1678 151 29 118 chr11 36860793 36861209 -113922344 - MLT1B LTR MaLR 0 390 12 398 255 7 76 chr11 36861220 36861365 -113922188 + L1ME1 LINE L1 6011 6145 -21 21 0 0 0 chr11 36861374 36861395 -113922158 + AT_rich Low_complexity Low_complexity 1 21 0 564 15 0 0 chr11 36862604 36862669 -113920884 + (CA)n Simple_repeat Simple_repeat 2 66 0 289 120 80 0 chr11 36862901 36862951 -113920602 - MIR SINE MIR -69 193 140 312 133 0 0 chr11 36862957 36863002 -113920551 - MLT1C LTR MaLR -2 465 421 270 301 38 45 chr11 36863006 36863139 -113920414 - MIR SINE MIR -124 138 7 655 268 25 45 chr11 36863418 36863671 -113919882 - MIR SINE MIR 0 262 16 1267 174 39 8 chr11 36864815 36865073 -113918480 + L1MD3 LINE L1 7730 7995 0 690 257 18 12 chr11 36865148 36865319 -113918234 - MIR SINE MIR -46 216 45 284 238 50 79 chr11 36865413 36865514 -113918039 + MER96B DNA MER1_type? 1 98 -319 21 0 0 0 chr11 36865514 36865535 -113918018 + AT_rich Low_complexity Low_complexity 1 21 0 3052 75 13 0 chr11 36865655 36866053 -113917500 - L1PA10 LINE L1 -31 6137 5735 1912 88 0 0 chr11 36866061 36866299 -113917254 - AluY SINE Alu -17 294 57 1501 196 35 26 chr11 36866300 36866642 -113916911 + L1MB3 LINE L1 5463 5807 -376 193 130 0 56 chr11 36866642 36866696 -113916857 + (CATA)n Simple_repeat Simple_repeat 1 51 0 2259 129 13 53 chr11 36866728 36867051 -113916502 + L1MB3 LINE L1 5802 6108 -75 2359 92 3 3 chr11 36867051 36867357 -113916196 - AluSg SINE Alu -4 306 1 2259 129 13 53 chr11 36867357 36867429 -113916124 + L1MB3 LINE L1 6108 6181 -2 481 125 12 0 chr11 36867440 36867520 -113916033 - MER96B DNA MER1_type? -49 368 288 1180 202 0 9 chr11 36867520 36867748 -113915805 + AluJo SINE Alu 84 309 -3 428 223 16 41 chr11 36867748 36867869 -113915684 - MER96B DNA MER1_type? -127 290 173 1845 178 3 0 chr11 36868271 36868563 -113914990 + AluJo SINE Alu 1 293 -19 1180 173 4 31 chr11 36869169 36869394 -113914159 + MER20 DNA MER1_type 1 219 0 287 283 33 11 chr11 36869690 36869782 -113913771 + L2 LINE L2 3179 3272 0 318 281 55 16 chr11 36869936 36870064 -113913489 - L2 LINE L2 -10 3303 3171 251 276 69 0 chr11 36870266 36870353 -113913200 + Charlie7 DNA MER1_type 10 102 -2510 867 270 48 72 chr11 36870401 36870857 -113912696 - LTR16A LTR ERVL -5 445 1 993 248 38 4 chr11 36871252 36871490 -113912063 + MIR SINE MIR 7 252 -10 334 224 171 0 chr11 36871568 36871644 -113911909 - MLT1J LTR MaLR 0 511 423 345 161 0 81 chr11 36871716 36871803 -113911750 - MLT1J LTR MaLR -197 314 235 677 251 51 6 chr11 36872692 36872867 -113910686 - MIR SINE MIR -70 192 10 424 345 82 76 chr11 36872941 36873283 -113910270 - L2 LINE L2 -8 3264 2921 462 36 0 0 chr11 36873402 36873458 -113910095 + (CA)n Simple_repeat Simple_repeat 2 57 0 441 280 0 0 chr11 36874226 36874333 -113909220 + MIR SINE MIR 47 153 -109 2277 99 0 3 chr11 36874416 36874719 -113908834 - AluY SINE Alu -9 302 1 332 296 0 0 chr11 36875840 36875928 -113907625 - L1MC4 LINE L1 -1339 6703 6616 204 67 0 0 chr11 36875928 36875958 -113907595 + (TCTA)n Simple_repeat Simple_repeat 2 31 0 927 249 70 5 chr11 36876338 36876551 -113907002 + Charlie1 DNA MER1_type 13 239 -2522 710 214 14 0 chr11 36876536 36876676 -113906877 + Charlie1 DNA MER1_type 2620 2761 0 * 2422 151 55 19 chr11 36876682 36877099 -113906454 + MSTB1 LTR MaLR 1 432 0 427 301 216 0 chr11 36877195 36877371 -113906182 - MIR SINE MIR -4 258 45 577 310 22 33 chr11 36877379 36877653 -113905900 - L1ME LINE L1 -314 5807 5537 394 286 46 101 chr11 36877835 36878202 -113905351 + MARNA DNA Mariner 31 377 -209 1423 229 74 20 chr11 36878226 36878619 -113904934 + LTR16A1 LTR ERVL 44 457 0 1234 330 74 34 chr11 36878758 36879554 -113903999 + ERVL LTR ERVL 149 976 -4020 1922 340 68 36 chr11 36879728 36880256 -113903297 + ERVL LTR ERVL 1216 1725 -3760 2337 138 19 32 chr11 36880256 36880625 -113902928 + THE1B LTR MaLR 1 364 0 1922 340 68 36 chr11 36880625 36881821 -113901732 + ERVL LTR ERVL 1725 3074 -2411 377 250 0 0 chr11 36881821 36881897 -113901656 + LTR16A1 LTR ERVL 382 457 0 285 353 34 0 chr11 36881925 36882044 -113901509 + MIR SINE MIR 30 152 -56 434 222 105 39 chr11 36882715 36882868 -113900685 + MER103 DNA DNA 3 165 -1 6924 80 12 8 chr11 36883187 36884520 -113899033 + L1PA13 LINE L1 4821 6163 0 666 159 177 0 chr11 36884678 36884791 -113898762 - FLAM_C SINE Alu 0 133 1 2185 87 4 0 chr11 36884936 36885213 -113898340 - AluSg SINE Alu -1 309 32 831 271 40 33 chr11 36885222 36885524 -113898029 + L2 LINE L2 3005 3308 -5 487 298 83 0 chr11 36885547 36885715 -113897838 - MIR SINE MIR -77 185 4 247 244 73 12 chr11 36887457 36887539 -113896014 - MER91C DNA MER1_type -28 112 26 226 227 0 0 chr11 36888138 36888182 -113895371 - ORSL DNA AcHobo 0 275 232 180 111 0 0 chr11 36888896 36888923 -113894630 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 904 209 34 64 chr11 36889114 36889348 -113894205 - MIR SINE MIR -13 249 23 265 316 29 123 chr11 36889383 36889736 -113893817 - L2 LINE L2 -173 3099 2771 1099 283 52 24 chr11 36889962 36890456 -113893097 + L1ME LINE L1 5283 5800 -321 706 200 0 0 chr11 36890482 36890597 -113892956 - FLAM_C SINE Alu -26 117 3 493 291 18 24 chr11 36892422 36892587 -113890966 - MIR3 SINE MIR -29 179 16 180 0 0 0 chr11 36892728 36892748 -113890805 + (T)n Simple_repeat Simple_repeat 1 20 0 305 211 40 13 chr11 36892767 36892843 -113890710 - MER116 DNA Mariner 0 80 3 2402 46 0 7 chr11 36892875 36893201 -113890352 + AluY SINE Alu 2 325 0 341 277 109 0 chr11 36893606 36893707 -113889846 + L2 LINE L2 3201 3312 -1 216 97 0 0 chr11 36893771 36893802 -113889751 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 946 193 0 0 chr11 36893804 36893949 -113889604 - FRAM SINE Alu -31 145 1 428 275 243 5 chr11 36895844 36896033 -113887520 - MIR SINE MIR -27 235 2 233 328 151 21 chr11 36896045 36896231 -113887322 + L2 LINE L2 1935 2144 -1170 440 363 24 0 chr11 36896287 36896411 -113887142 + L2 LINE L2 3146 3272 0 799 318 42 15 chr11 36897118 36897520 -113886033 - HERV16 LTR ERVL -1576 4078 3666 2897 111 10 0 chr11 36897522 36897917 -113885636 + MER1A DNA MER1_type 131 529 0 1565 307 85 14 chr11 36897917 36897972 -113885581 - HERV16 LTR ERVL -1905 3091 3041 2334 156 4 87 chr11 36897972 36898422 -113885131 - MLT2D LTR ERVL 0 414 2 1565 307 85 14 chr11 36898422 36899139 -113884414 - HERV16 LTR ERVL -1955 3041 2573 924 181 0 12 chr11 36899140 36899300 -113884253 - FRAM SINE Alu -19 157 1 4015 291 85 25 chr11 36899328 36900244 -113883309 - HERV16 LTR ERVL -2469 2527 1668 1981 112 72 4 chr11 36900244 36900521 -113883032 - AluSg SINE Alu -14 296 1 4015 291 85 25 chr11 36900521 36901964 -113881589 - HERV16 LTR ERVL -3328 1668 1 1124 259 93 38 chr11 36901964 36902063 -113881490 - LTR16A LTR ERVL 0 450 358 486 292 0 0 chr11 36902063 36902176 -113881377 - MER81 DNA DNA 0 114 2 1124 259 93 38 chr11 36902176 36902497 -113881056 - LTR16A LTR ERVL -92 358 7 1923 209 86 70 chr11 36902883 36903473 -113880080 + LTR9 LTR ERV1 2 601 -11 4518 165 58 28 chr11 36903698 36904521 -113879032 + MER21B LTR ERV1 5 852 -11 2407 125 9 9 chr11 36904603 36904940 -113878613 + MER1B DNA MER1_type 1 337 0 344 274 58 106 chr11 36905707 36905933 -113877620 - MLT1K LTR MaLR -41 547 333 3327 161 115 58 chr11 36906314 36906794 -113876759 + LTR1B LTR ERV1 1 545 -281 2268 115 66 20 chr11 36906794 36907142 -113876411 + THE1B LTR MaLR 1 364 0 3327 161 115 58 chr11 36907142 36907442 -113876111 + LTR1B LTR ERV1 545 826 0 453 252 49 0 chr11 36908595 36908718 -113874835 - MLT1H LTR MaLR -297 252 124 736 127 9 27 chr11 36908744 36908854 -113874699 - AluSg/x SINE Alu -26 286 179 524 167 10 31 chr11 36908845 36908941 -113874612 - AluSg/x SINE Alu -93 217 124 * 1542 56 0 0 chr11 36908941 36909121 -113874432 - L1PA5 LINE L1 -5 6149 5970 246 273 132 41 chr11 36909352 36909473 -113874080 + MIR SINE MIR 16 147 -115 2026 122 0 14 chr11 36911224 36911533 -113872020 - AluSx SINE Alu 0 305 1 311 224 79 13 chr11 36912435 36912511 -113871042 + MIR SINE MIR 108 188 -74 2206 104 16 3 chr11 36912696 36913003 -113870550 + AluSx SINE Alu 1 311 -1 4712 98 0 5 chr11 36913013 36913669 -113869884 + L1PA14 LINE L1 5493 6145 -16 1785 191 3 0 chr11 36916028 36916326 -113867227 + AluSx SINE Alu 1 299 -13 645 164 23 18 chr11 36916640 36916915 -113866638 + (TA)n Simple_repeat Simple_repeat 1 276 0 400 145 0 0 chr11 36916917 36916979 -113866574 + Tigger3b DNA MER2_type 30 91 -1140 2242 147 11 46 chr11 36916995 36917432 -113866121 - LTR3 LTR ERVK -10 422 1 * 6079 120 60 22 chr11 36917432 36918535 -113865018 + Tigger3b DNA MER2_type 87 1231 0 272 256 167 0 chr11 36920169 36920259 -113863294 + MIR SINE MIR 148 252 -10 21 57 0 0 chr11 36920620 36920655 -113862898 + AT_rich Low_complexity Low_complexity 1 35 0 2827 115 5 2 chr11 36921063 36921481 -113862072 - L1PA15 LINE L1 -2 6163 5745 285 247 26 0 chr11 36925780 36925857 -113857696 - L3b LINE CR1 -227 1356 1278 1508 150 0 68 chr11 36925973 36926239 -113857314 + AluJb SINE Alu 40 287 -25 222 37 0 0 chr11 36927450 36927477 -113856076 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 464 314 81 88 chr11 36927490 36927625 -113855928 + L1MEd LINE L1 3 137 -5982 5248 57 47 1 chr11 36927625 36928310 -113855243 + L1PA7 LINE L1 5428 6143 -11 464 314 81 88 chr11 36928310 36928642 -113854911 + L1MEd LINE L1 137 467 -5652 3311 132 64 56 chr11 36929062 36929701 -113853852 + LTR9B LTR ERV1 1 644 0 51094 138 42 21 chr11 36929701 36930372 -113853181 + HUERS-P3 LTR ERV1 1 656 -8263 2468 48 0 3 chr11 36930372 36930664 -113852889 - AluY SINE Alu 0 311 21 705 67 0 0 chr11 36930664 36930754 -113852799 - AluY SINE Alu -221 90 1 51094 138 42 21 chr11 36930754 36938726 -113844827 + HUERS-P3 LTR ERV1 655 8919 0 618 211 136 11 chr11 36939607 36939872 -113843681 - LTR37A LTR ERV1 -35 391 94 377 295 70 0 chr11 36940145 36940274 -113843279 + MIR3 SINE MIR 31 168 -40 729 277 92 94 chr11 36940833 36941291 -113842262 - L2 LINE L2 -33 3280 2824 1026 302 113 11 chr11 36941302 36941822 -113841731 - L2 LINE L2 -1640 1674 1102 183 314 163 45 chr11 36941840 36942104 -113841449 - L2 LINE L2 -1408 1906 1612 814 214 204 18 chr11 36942240 36942460 -113841093 - MIR SINE MIR 0 262 2 237 346 83 6 chr11 36942484 36942640 -113840913 - L2 LINE L2 -1880 1434 1267 197 313 0 10 chr11 36942752 36942848 -113840705 - L2 LINE L2 -2509 805 711 538 273 79 19 chr11 36943099 36943315 -113840238 + Charlie8 DNA MER1_type 24 252 -2165 512 314 198 51 chr11 36943980 36944037 -113839516 + L2 LINE L2 2231 2278 -994 3281 67 30 5 chr11 36944037 36944470 -113839083 + MLT2A1 LTR ERVL 1 444 0 512 314 198 51 chr11 36944470 36944868 -113838685 + L2 LINE L2 2278 2616 -656 4672 59 101 0 chr11 36944868 36945491 -113838062 - LTR12 LTR ERV1 -2 686 1 512 314 198 51 chr11 36945491 36945945 -113837608 + L2 LINE L2 2616 3268 -4 2299 99 10 0 chr11 36946307 36946611 -113836942 + AluSq SINE Alu 1 307 -6 21 57 0 0 chr11 36947981 36948016 -113835537 + GC_rich Low_complexity Low_complexity 1 35 0 220 272 126 29 chr11 36949442 36949545 -113834008 - MER5A DNA MER1_type -43 146 34 1592 133 41 38 chr11 36949747 36950040 -113833513 + AluJo SINE Alu 8 301 -11 1721 180 82 43 chr11 36950221 36950683 -113832870 - MLT1D LTR MaLR -3 502 23 185 305 0 61 chr11 36950750 36950832 -113832721 - L3 LINE CR1 -199 1378 1302 248 316 120 13 chr11 36951060 36951218 -113832335 - MIR SINE MIR -9 253 79 199 244 12 98 chr11 36951372 36951454 -113832099 - L2 LINE L2 -27 3245 3171 203 337 22 0 chr11 36951644 36951733 -113831820 - L2 LINE L2 -290 2982 2892 325 280 190 41 chr11 36952104 36952493 -113831060 + Charlie8 DNA MER1_type 84 530 -1887 194 0 39 0 chr11 36953184 36953210 -113830343 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 224 281 182 25 chr11 36953467 36953588 -113829965 - MIR SINE MIR -53 209 70 302 314 58 15 chr11 36953624 36953761 -113829792 - MLT1L LTR MaLR -292 323 181 491 198 0 36 chr11 36953911 36954022 -113829531 - MIR SINE MIR 0 262 156 330 26 0 0 chr11 36954449 36954488 -113829065 + (TG)n Simple_repeat Simple_repeat 2 40 0 452 252 257 5 chr11 36955771 36955821 -113827732 - MIR SINE MIR -3 259 223 1873 123 74 0 chr11 36955821 36956105 -113827448 - AluSx SINE Alu -7 305 1 452 252 257 5 chr11 36956105 36956260 -113827293 - MIR SINE MIR -39 223 2 36 0 0 0 chr11 36956272 36956308 -113827245 + AT_rich Low_complexity Low_complexity 1 36 0 283 241 105 68 chr11 36956310 36956472 -113827081 - HAL1 LINE L1 -7 2500 2333 364 242 191 17 chr11 36956524 36956702 -113826851 - HAL1 LINE L1 -311 2196 1988 463 242 50 8 chr11 36956823 36957080 -113826473 - HAL1 LINE L1 -2030 477 96 255 260 24 24 chr11 36957157 36957280 -113826273 - L1ME4a LINE L1 -30 6091 5969 1121 132 72 72 chr11 36957325 36957560 -113825993 + MER46A DNA MER2_type 1 235 -1 21 36 0 0 chr11 36959553 36959581 -113823972 + AT_rich Low_complexity Low_complexity 1 28 0 1455 147 41 0 chr11 36960820 36961065 -113822488 - AluSx SINE Alu -12 300 46 230 56 28 0 chr11 36962559 36962595 -113820958 + (TTG)n Simple_repeat Simple_repeat 2 38 0 351 0 0 0 chr11 36963397 36963436 -113820117 + (TG)n Simple_repeat Simple_repeat 2 40 0 1776 271 70 30 chr11 36963984 36964588 -113818965 + L1MC5 LINE L1 5307 5934 -1874 3256 217 75 70 chr11 36965160 36966156 -113817397 + L1MC5 LINE L1 6625 7630 -331 1967 144 3 7 chr11 36966156 36966462 -113817091 - AluJb SINE Alu -6 306 2 3256 217 75 70 chr11 36966462 36966745 -113816808 + L1MC5 LINE L1 7630 7910 -51 38 0 0 0 chr11 36966745 36966783 -113816770 + AT_rich Low_complexity Low_complexity 1 38 0 285 344 142 24 chr11 36968003 36968215 -113815338 - L2 LINE L2 -162 3110 2874 2125 119 20 0 chr11 36968363 36968666 -113814887 - AluSx SINE Alu -1 311 3 680 238 35 62 chr11 36968997 36969253 -113814300 - L2 LINE L2 -870 2444 2196 759 274 94 7 chr11 36969317 36969594 -113813959 + L1MEd LINE L1 502 802 -5317 712 235 35 56 chr11 36969622 36969941 -113813612 + L1MEd LINE L1 904 1215 -4904 333 0 0 0 chr11 36971053 36971090 -113812463 + (TG)n Simple_repeat Simple_repeat 1 37 0 1481 205 45 24 chr11 36972129 36972504 -113811049 - L1MB8 LINE L1 -2 6176 5794 366 191 15 0 chr11 36972589 36972657 -113810896 + MER3 DNA MER1_type 7 75 -134 218 348 65 14 chr11 36972913 36973051 -113810502 + L2 LINE L2 3164 3308 -5 244 224 129 12 chr11 36973668 36973753 -113809800 + L2 LINE L2 3182 3276 -37 344 294 73 0 chr11 36974029 36974138 -113809415 - MIR SINE MIR -139 123 7 258 259 0 49 chr11 36974371 36974452 -113809101 + CT-rich Low_complexity Low_complexity 6 82 0 251 341 75 62 chr11 36975231 36975615 -113807938 + L2 LINE L2 2829 3217 -55 266 169 45 0 chr11 36975616 36975705 -113807848 + (TA)n Simple_repeat Simple_repeat 2 94 0 2011 125 0 3 chr11 36975715 36976004 -113807549 - AluSq SINE Alu -25 288 1 21 36 0 0 chr11 36976104 36976132 -113807421 + AT_rich Low_complexity Low_complexity 1 28 0 475 231 46 38 chr11 36976276 36976556 -113806997 - L1M4 LINE L1 -3795 2849 2567 24 0 0 0 chr11 36976631 36976655 -113806898 + AT_rich Low_complexity Low_complexity 1 24 0 334 114 100 29 chr11 36976696 36976766 -113806787 - MADE1 DNA Mariner -1 79 5 548 307 79 33 chr11 36976917 36977246 -113806307 - HAL1 LINE L1 -740 1767 1424 427 269 155 12 chr11 36977321 36977482 -113806071 - L1ME3 LINE L1 -2 6168 5985 586 276 63 104 chr11 36977493 36977942 -113805611 - L1M4 LINE L1 -4885 1749 1203 298 285 111 0 chr11 36978851 36978912 -113804641 - L1ME4a LINE L1 -2 6119 6066 216 111 0 0 chr11 36978912 36978948 -113804605 + (CA)n Simple_repeat Simple_repeat 1 36 0 298 285 111 0 chr11 36978948 36979058 -113804495 - L1ME4a LINE L1 -55 6066 5929 605 305 60 40 chr11 36979563 36979812 -113803741 + MIR SINE MIR 3 256 -6 1947 129 41 0 chr11 36980822 36981117 -113802436 - AluSp SINE Alu -2 311 5 22 35 0 0 chr11 36981520 36981549 -113802004 + AT_rich Low_complexity Low_complexity 1 29 0 563 165 165 0 chr11 36981798 36981931 -113801622 + MER114 LTR ERV 1 155 -493 7437 27 0 2 chr11 36981933 36982634 -113800919 - L1PA3 LINE L1 0 6155 5493 2553 36 0 10 chr11 36982634 36982943 -113800610 - AluY SINE Alu -5 306 1 7437 27 0 2 chr11 36982943 36983617 -113799936 - L1PA3 LINE L1 -662 5493 4819 11987 36 1 0 chr11 36983618 36985071 -113798482 + L1P LINE L1 3331 4785 -1361 935 185 82 0 chr11 36985297 36985481 -113798072 + MIR SINE MIR 31 229 -33 840 238 42 0 chr11 36986343 36986532 -113797021 - MIR SINE MIR -26 236 40 291 295 157 19 chr11 36986533 36986743 -113796810 + L3 LINE CR1 703 941 -636 198 200 113 62 chr11 36988694 36988774 -113794779 + L3 LINE CR1 1257 1340 -237 309 302 12 0 chr11 36989336 36989422 -113794131 - L2 LINE L2 -1 3271 3185 2074 103 7 7 chr11 36989904 36990185 -113793368 - AluSp SINE Alu -32 281 1 336 227 0 0 chr11 36990504 36990570 -113792983 + Charlie8 DNA MER1_type 123 188 -2229 26 0 0 0 chr11 36990761 36990787 -113792766 + AT_rich Low_complexity Low_complexity 1 26 0 4174 144 82 40 chr11 36990796 36991654 -113791899 + L1MB3 LINE L1 5282 6175 -8 22 35 0 0 chr11 36991894 36991923 -113791630 + AT_rich Low_complexity Low_complexity 1 29 0 332 297 47 58 chr11 36992451 36992832 -113790721 - L1ME LINE L1 -1239 5702 5326 262 262 47 47 chr11 36992893 36993000 -113790553 - L2 LINE L2 -80 3233 3127 1584 169 6 49 chr11 36994838 36995164 -113788389 - AluJo SINE Alu 0 312 1 2136 127 10 0 chr11 36995908 36996207 -113787346 + AluSx SINE Alu 3 304 -8 2162 212 43 69 chr11 36996596 36997265 -113786288 - MLT1E1 LTR MaLR 0 654 3 2340 115 0 0 chr11 36998424 36998736 -113784817 - AluSx SINE Alu 0 312 1 1591 183 38 7 chr11 36999572 36999862 -113783691 + AluJo SINE Alu 1 299 -13 878 200 42 50 chr11 37000276 37000516 -113783037 - L1M4 LINE L1 -3220 2926 2689 1907 169 135 17 chr11 37000516 37000872 -113782681 + MER47B DNA MER2_type 20 417 -1 2212 108 7 10 chr11 37000922 37001229 -113782324 - AluSg SINE Alu -4 306 1 222 300 14 0 chr11 37001317 37001387 -113782166 + (TATG)n Simple_repeat Simple_repeat 2 72 0 23 0 0 0 chr11 37001931 37001954 -113781599 + AT_rich Low_complexity Low_complexity 1 23 0 1141 177 59 5 chr11 37002237 37002457 -113781096 + MER46A DNA MER2_type 1 232 -4 5174 251 116 24 chr11 37002841 37003980 -113779573 - L1ME LINE L1 -1944 4997 3964 2007 146 0 3 chr11 37003980 37004282 -113779271 - AluSx SINE Alu -10 302 2 5174 251 116 24 chr11 37004282 37005594 -113777959 - L1ME LINE L1 -2977 3964 2220 3529 163 44 30 chr11 37005594 37006228 -113777325 - L1MB3 LINE L1 0 6183 5536 1448 178 73 4 chr11 37006228 37006503 -113777050 + AluJo SINE Alu 1 294 -18 3529 163 44 30 chr11 37006503 37006590 -113776963 - L1MB3 LINE L1 -647 5536 5452 5174 251 116 24 chr11 37006590 37007228 -113776325 - L1ME LINE L1 -4721 2220 1642 953 216 4 17 chr11 37007229 37007461 -113776092 - L1ME LINE L1 -6178 245 17 548 273 252 11 chr11 37008019 37008305 -113775248 - L2 LINE L2 -963 2351 1997 354 226 37 63 chr11 37009151 37009341 -113774212 - Charlie7 DNA MER1_type -11 2601 2417 206 241 0 37 chr11 37009905 37009959 -113773594 - MIR SINE MIR -59 149 98 1784 261 99 46 chr11 37009979 37010967 -113772586 - L2 LINE L2 -50 3263 2228 304 53 0 0 chr11 37011114 37011152 -113772401 + tRNA-Gln-CAG tRNA tRNA 1 38 -37 21 57 0 0 chr11 37011230 37011265 -113772288 + AT_rich Low_complexity Low_complexity 1 35 0 391 344 50 55 chr11 37011442 37011499 -113772054 - L1 LINE L1 -2500 3646 3590 25 0 0 0 chr11 37011499 37011524 -113772029 + AT_rich Low_complexity Low_complexity 1 25 0 391 344 50 55 chr11 37011524 37011843 -113771710 - L1 LINE L1 -2556 3590 3248 333 206 0 0 chr11 37011955 37012028 -113771525 - LTR30 LTR ERV1 -98 624 552 7474 35 0 0 chr11 37012583 37013913 -113769640 - L1PA4 LINE L1 0 6155 4827 13611 43 0 2 chr11 37013913 37015681 -113767872 + L1PA4 LINE L1 3046 4812 -1334 2135 118 0 0 chr11 37016745 37017034 -113766519 + AluSc SINE Alu 1 289 -20 2036 153 0 10 chr11 37017607 37017915 -113765638 + AluSx SINE Alu 1 305 -7 26 30 0 0 chr11 37018133 37018166 -113765387 + AT_rich Low_complexity Low_complexity 1 33 0 456 310 107 15 chr11 37018498 37018695 -113764858 - MIR SINE MIR -25 237 23 285 29 0 0 chr11 37019314 37019348 -113764205 + (TG)n Simple_repeat Simple_repeat 2 35 0 513 284 89 36 chr11 37019835 37020060 -113763493 - MIR SINE MIR -24 238 2 1664 127 76 10 chr11 37020337 37020564 -113762989 + MER44D DNA MER2_type 5 215 -2276 1251 167 173 13 chr11 37020564 37020864 -113762689 - MER7A DNA MER2_type 0 346 1 1664 127 76 10 chr11 37020864 37020950 -113762603 + MER44D DNA MER2_type 215 609 0 282 351 153 16 chr11 37021197 37021505 -113762048 + L2 LINE L2 2955 3304 -9 232 265 59 22 chr11 37022788 37022924 -113760629 + L1ME LINE L1 5528 5668 -453 28 0 0 0 chr11 37023052 37023080 -113760473 + AT_rich Low_complexity Low_complexity 1 28 0 2137 132 10 3 chr11 37023211 37023521 -113760032 + AluSx SINE Alu 1 312 0 1473 231 120 10 chr11 37024194 37024701 -113758852 - L1ME3A LINE L1 -250 5920 5358 1777 251 107 23 chr11 37024761 37025636 -113757917 - L1ME3A LINE L1 -867 5279 4298 3096 131 64 55 chr11 37025636 37026231 -113757322 - MER7C DNA MER2_type -1 601 2 1777 251 107 23 chr11 37026231 37026414 -113757139 - L1ME3A LINE L1 -1848 4298 4132 1788 155 0 24 chr11 37028335 37028632 -113754921 - AluJb SINE Alu -22 290 1 23 33 0 0 chr11 37029491 37029521 -113754032 + AT_rich Low_complexity Low_complexity 1 30 0 253 294 130 4 chr11 37030996 37031104 -113752449 + MIR SINE MIR 30 149 -59 195 309 95 12 chr11 37031252 37031336 -113752217 - MIR SINE MIR -150 112 22 225 162 0 0 chr11 37032074 37032111 -113751442 - LTR41 LTR ERVL -736 37 1 2148 87 56 0 chr11 37033665 37033951 -113749602 - AluSg SINE Alu -6 304 3 2195 119 3 7 chr11 37033961 37034271 -113749282 - AluJo SINE Alu -3 309 1 657 243 41 82 chr11 37034443 37034686 -113748867 - MIR SINE MIR -1 261 29 3427 45 0 0 chr11 37036214 37036632 -113746921 - L1PA7 LINE L1 -11 6143 5726 3741 183 75 14 chr11 37037188 37038064 -113745489 + MER63C DNA MER1_type 1 930 0 22 0 0 0 chr11 37038840 37038862 -113744691 + AT_rich Low_complexity Low_complexity 1 22 0 341 298 42 123 chr11 37040411 37040467 -113743086 + L2 LINE L2 2997 3056 -216 2061 116 3 17 chr11 37040467 37040761 -113742792 - AluSx SINE Alu -22 290 1 341 298 42 123 chr11 37040761 37040989 -113742564 + L2 LINE L2 3056 3258 -14 649 123 175 0 chr11 37042218 37042332 -113741221 + AluJo SINE Alu 1 134 -178 603 213 58 32 chr11 37042762 37042917 -113740636 + MIR SINE MIR 55 213 -49 329 369 19 6 chr11 37042990 37043147 -113740406 - MIR3 SINE MIR -9 199 41 1588 176 39 39 chr11 37043522 37043828 -113739725 + AluJb SINE Alu 5 310 -2 228 135 0 0 chr11 37044545 37044582 -113738971 + (A)n Simple_repeat Simple_repeat 1 37 0 2148 123 0 22 chr11 37044584 37044901 -113738652 + AluSx SINE Alu 1 310 -2 324 287 21 0 chr11 37046467 37046616 -113736937 + (TATG)n Simple_repeat Simple_repeat 1 152 0 188 227 0 0 chr11 37046621 37046665 -113736888 - MER5B DNA MER1_type -131 47 4 484 283 161 5 chr11 37047125 37047330 -113736223 - MIR SINE MIR -19 243 7 2331 108 0 9 chr11 37048136 37048451 -113735102 + AluSx SINE Alu 1 312 0 240 268 73 32 chr11 37048919 37049139 -113734414 + L1ME4a LINE L1 5893 6121 0 199 271 290 0 chr11 37049671 37049778 -113733775 + MER5B DNA MER1_type 17 154 -24 947 146 50 9 chr11 37050298 37050518 -113733035 - MER45R DNA AcHobo -106 1475 1247 1675 150 13 22 chr11 37050551 37050865 -113732688 - L1MC1 LINE L1 -23 6310 6000 1339 227 99 42 chr11 37051004 37051215 -113732338 + MER114 LTR ERV 1 199 -449 1548 109 34 44 chr11 37051215 37051508 -113732045 - L1MA1 LINE L1 0 6302 6013 1339 227 99 42 chr11 37051508 37051782 -113731771 + MER114 LTR ERV 199 531 -117 1907 127 0 0 chr11 37051782 37052042 -113731511 - AluSx SINE Alu -15 297 38 1339 227 99 42 chr11 37052042 37052168 -113731385 + MER114 LTR ERV 531 648 0 28278 108 11 15 chr11 37053564 37058079 -113725474 + L1PA7 LINE L1 3 4503 -1643 6735 75 1 1 chr11 37058472 37060129 -113723424 + L1PA7 LINE L1 4512 6154 0 476 91 0 0 chr11 37060257 37060323 -113723230 - AluSp/q SINE Alu -72 241 176 29 0 0 0 chr11 37061796 37061825 -113721728 + AT_rich Low_complexity Low_complexity 1 29 0 499 174 0 11 chr11 37061985 37062077 -113721476 - MLT1B LTR MaLR 0 390 300 1680 158 17 30 chr11 37062722 37063019 -113720534 - AluJo SINE Alu -19 293 1 2004 122 0 4 chr11 37063546 37063824 -113719729 + AluSx SINE Alu 1 277 -35 911 242 109 61 chr11 37063960 37064353 -113719200 - MLT1H LTR MaLR -128 421 10 259 268 159 26 chr11 37064668 37064793 -113718760 - MIR SINE MIR -65 143 16 346 330 173 17 chr11 37065388 37065567 -113717986 - MIR SINE MIR -6 256 50 2927 82 3 0 chr11 37066635 37066989 -113716564 - THE1A LTR MaLR 0 355 1 12241 98 8 1 chr11 37066989 37068559 -113714994 - THE1A-int LTR MaLR 0 1580 1 2941 79 6 0 chr11 37068559 37068912 -113714641 - THE1A LTR MaLR 0 355 1 240 35 0 0 chr11 37069486 37069515 -113714038 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2226 237 51 5 chr11 37069865 37070624 -113712929 - L1ME3A LINE L1 -1 6169 5290 785 199 7 22 chr11 37070647 37070783 -113712770 - AluJo SINE Alu -176 136 3 1350 265 70 56 chr11 37070785 37071402 -113712151 - L1ME3A LINE L1 -863 5283 4661 1983 144 0 29 chr11 37071435 37071741 -113711812 - AluSq SINE Alu -15 298 2 394 255 19 0 chr11 37072015 37072121 -113711432 - MIR SINE MIR 0 262 155 503 254 92 23 chr11 37072214 37072387 -113711166 - MIR3 SINE MIR -4 204 20 263 310 74 25 chr11 37072431 37072673 -113710880 + L2 LINE L2 1739 1992 -1322 331 0 0 0 chr11 37072673 37072713 -113710840 - L1PA6 LINE L1 -3 6151 6112 1465 154 40 4 chr11 37072713 37072960 -113710593 - THE1B LTR MaLR -105 259 4 248 306 83 0 chr11 37072963 37073035 -113710518 + L2 LINE L2 2242 2319 -995 346 194 39 78 chr11 37073585 37073714 -113709839 + L2 LINE L2 2315 2438 -876 1932 153 3 0 chr11 37073832 37074119 -113709434 - AluJb SINE Alu -12 300 13 793 254 72 29 chr11 37074180 37074487 -113709066 + L2 LINE L2 2994 3313 0 3195 185 69 37 chr11 37074689 37075417 -113708136 - L1MD1 LINE L1 0 6242 5492 2330 127 68 11 chr11 37075799 37076154 -113707399 - THE1C LTR MaLR 0 375 1 858 260 77 4 chr11 37076544 37076779 -113706774 - MIR SINE MIR -5 257 6 1113 120 19 0 chr11 37076814 37076972 -113706581 - MER1A DNA MER1_type 0 533 373 9049 27 16 0 chr11 37076972 37078034 -113705519 - L1P LINE L1 -1768 4378 3300 2208 141 0 0 chr11 37078034 37078347 -113705206 - MER1A DNA MER1_type -132 397 85 329 304 78 59 chr11 37078614 37078818 -113704735 - MIR SINE MIR -6 256 49 322 385 57 20 chr11 37078945 37079246 -113704307 + L2 LINE L2 2365 2676 -638 258 259 17 0 chr11 37079520 37079578 -113703975 + MIR SINE MIR 204 262 0 377 258 158 0 chr11 37080220 37080340 -113703213 + L1ME LINE L1 5680 5818 -303 203 329 92 0 chr11 37080605 37080681 -113702872 - MIR3 SINE MIR -52 156 74 581 272 145 4 chr11 37081506 37081734 -113701819 + MIR SINE MIR 2 261 -1 245 319 196 28 chr11 37082215 37082500 -113701053 + L2 LINE L2 316 648 -2666 913 311 217 30 chr11 37082555 37083480 -113700073 + L2 LINE L2 1160 2257 -1057 375 328 56 17 chr11 37083543 37083723 -113699830 - MIR SINE MIR -27 235 49 291 393 14 7 chr11 37083775 37083920 -113699633 + L2 LINE L2 2433 2578 -736 797 180 168 0 chr11 37083926 37084087 -113699466 - MER20 DNA MER1_type 0 219 32 398 357 92 35 chr11 37084098 37084381 -113699172 + L2 LINE L2 2574 2872 -442 288 0 0 0 chr11 37084502 37084534 -113699019 + (CA)n Simple_repeat Simple_repeat 1 32 0 532 281 123 60 chr11 37084567 37084869 -113698684 + L2 LINE L2 2984 3304 -9 537 252 42 0 chr11 37085456 37085575 -113697978 - MIR3 SINE MIR -23 185 62 205 205 0 0 chr11 37085603 37085642 -113697911 + A-rich Low_complexity Low_complexity 1 39 0 381 231 9 28 chr11 37087000 37087108 -113696445 + LTR67 LTR ERVL 428 533 -24 1697 114 47 0 chr11 37089003 37089257 -113694296 + L1MA1 LINE L1 6037 6302 0 329 244 44 0 chr11 37090525 37090615 -113692938 + Charlie7 DNA MER1_type 8 101 -2511 209 154 26 64 chr11 37090638 37090716 -113692837 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 267 278 32 40 chr11 37091983 37092109 -113691444 + LTR16B LTR ERVL 327 451 -13 233 98 24 0 chr11 37092420 37092461 -113691092 + (CA)n Simple_repeat Simple_repeat 1 42 0 213 260 41 27 chr11 37092931 37093004 -113690549 - MIR SINE MIR -125 137 64 693 181 12 118 chr11 37093078 37093356 -113690197 + MER57A LTR ERV1 64 261 -142 295 163 0 0 chr11 37093403 37093452 -113690101 + LTR54 LTR ERV1 427 475 -35 337 307 18 85 chr11 37093567 37093850 -113689703 - MLT1I LTR MaLR -2 407 144 22 0 0 0 chr11 37094125 37094147 -113689406 + AT_rich Low_complexity Low_complexity 1 22 0 601 278 26 0 chr11 37094949 37095100 -113688453 + MIR SINE MIR 12 166 -96 1301 195 26 7 chr11 37095182 37095454 -113688099 + AluJo SINE Alu 11 287 -25 1316 158 32 0 chr11 37095708 37095929 -113687624 - MLT1A1 LTR MaLR 0 365 138 566 273 23 0 chr11 37096029 37096161 -113687392 + MIR SINE MIR 32 166 -96 1619 174 11 7 chr11 37096237 37096519 -113687034 + AluJo SINE Alu 5 287 -25 1894 124 23 101 chr11 37096773 37097161 -113686392 - MLT1A1 LTR MaLR 0 365 8 1811 127 0 0 chr11 37097381 37097633 -113685920 + AluSg SINE Alu 59 310 0 317 326 15 38 chr11 37097973 37098105 -113685448 + MIR SINE MIR 17 145 -63 250 260 0 0 chr11 37098139 37098189 -113685364 + MIR SINE MIR 213 262 0 554 264 75 33 chr11 37098699 37098911 -113684642 + MIR SINE MIR 33 253 -9 523 290 0 14 chr11 37099187 37099325 -113684228 - MIR3 SINE MIR -48 160 25 2221 106 3 3 chr11 37100343 37100646 -113682907 - AluSx SINE Alu -9 303 1 821 164 0 23 chr11 37101385 37101513 -113682040 + FLAM_C SINE Alu 2 126 -17 642 248 29 78 chr11 37101640 37101846 -113681707 - MER117 DNA MER1_type 0 197 2 196 331 141 0 chr11 37102404 37102525 -113681028 + L2 LINE L2 2920 3057 -215 1242 59 13 0 chr11 37103044 37103197 -113680356 + L1PA7 LINE L1 6000 6154 0 593 273 0 66 chr11 37103206 37103404 -113680149 + MIR SINE MIR 46 230 -32 889 250 259 6 chr11 37104811 37105147 -113678406 + L2 LINE L2 2893 3313 0 312 167 0 0 chr11 37105398 37105470 -113678083 + (TG)n Simple_repeat Simple_repeat 1 72 0 3584 120 12 6 chr11 37105564 37106073 -113677480 - MER41E LTR ERV1 0 512 1 1011 155 0 23 chr11 37106443 37106617 -113676936 - AluJb SINE Alu -6 306 137 200 57 0 29 chr11 37106708 37106743 -113676810 + (CAA)n Simple_repeat Simple_repeat 2 35 0 680 248 122 62 chr11 37107191 37107675 -113675878 - L1MC4a LINE L1 -1859 5949 5437 29 0 0 0 chr11 37107754 37107783 -113675770 + AT_rich Low_complexity Low_complexity 1 29 0 310 323 0 39 chr11 37108637 37108764 -113674789 - MIR SINE MIR -116 146 25 201 121 0 0 chr11 37109556 37109589 -113673964 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 269 185 93 0 chr11 37110349 37110403 -113673150 + MIR SINE MIR 43 101 -107 1006 293 109 18 chr11 37110439 37110825 -113672728 - MLT1K LTR MaLR -10 578 158 1114 184 104 0 chr11 37110975 37111176 -113672377 - MER58A DNA MER1_type -2 222 1 209 271 0 0 chr11 37111229 37111277 -113672276 + MIR SINE MIR 215 262 0 213 240 0 0 chr11 37111297 37111347 -113672206 + (TAA)n Simple_repeat Simple_repeat 3 52 0 350 300 43 7 chr11 37111444 37111584 -113671969 - MIR3 SINE MIR -23 185 41 439 145 0 14 chr11 37112371 37112440 -113671113 - MER58 DNA MER1_type 0 2420 2353 279 219 178 32 chr11 37112582 37112678 -113670875 + MIR SINE MIR 63 164 -62 3061 78 8 0 chr11 37112921 37113307 -113670246 - L1PA10 LINE L1 -4 6164 5776 39 22 0 0 chr11 37113374 37113420 -113670133 + AT_rich Low_complexity Low_complexity 1 46 0 880 127 16 0 chr11 37113441 37113567 -113669986 - AluJb SINE Alu -175 137 10 257 212 204 9 chr11 37114238 37114351 -113669202 + MIR SINE MIR 34 168 -94 540 0 0 0 chr11 37114382 37114442 -113669111 + (CAAAA)n Simple_repeat Simple_repeat 1 60 0 488 274 16 89 chr11 37114987 37115177 -113668376 - Charlie8 DNA MER1_type -2057 360 185 1962 135 3 57 chr11 37115286 37115604 -113667949 + AluSx SINE Alu 9 309 -3 2096 128 0 13 chr11 37115817 37116122 -113667431 - AluSx SINE Alu -7 305 5 198 274 0 0 chr11 37116705 37116756 -113666797 - L2 LINE L2 -4 3268 3218 2085 207 30 45 chr11 37118277 37118785 -113664768 - MLT1D LTR MaLR -4 501 2 601 287 37 28 chr11 37119158 37119374 -113664179 + MIR SINE MIR 8 225 -37 460 306 18 18 chr11 37119384 37119554 -113663999 + L3 LINE CR1 1293 1462 -115 256 367 8 8 chr11 37119566 37119686 -113663867 + MER5A DNA MER1_type 18 137 -52 3808 118 68 5 chr11 37119719 37120337 -113663216 - L1MC1 LINE L1 -15 6318 5662 667 310 9 0 chr11 37120674 37120887 -113662666 + MIR SINE MIR 42 256 -6 257 306 12 0 chr11 37121421 37121506 -113662047 + MIR SINE MIR 65 150 -112 333 314 8 0 chr11 37121992 37122110 -113661443 - L1ME3A LINE L1 0 6170 6052 2369 108 0 3 chr11 37123271 37123576 -113659977 - AluSq SINE Alu -9 304 1 426 323 80 51 chr11 37123749 37124062 -113659491 - L2 LINE L2 0 3272 2951 226 299 126 0 chr11 37125701 37125788 -113657765 - MIR3 SINE MIR 0 208 111 232 259 0 0 chr11 37125933 37125991 -113657562 - MIR SINE MIR -121 87 30 543 328 74 14 chr11 37127835 37127951 -113655602 + L2 LINE L2 2997 3105 -208 2746 88 11 16 chr11 37127951 37128328 -113655225 + THE1C LTR MaLR 1 375 0 543 328 74 14 chr11 37128328 37128507 -113655046 + L2 LINE L2 3105 3310 -3 183 363 88 0 chr11 37128625 37128716 -113654837 - L2 LINE L2 -40 3232 3134 200 265 0 0 chr11 37128956 37129005 -113654548 + MIR SINE MIR 210 258 -4 212 179 0 0 chr11 37129125 37129164 -113654389 + (TTATA)n Simple_repeat Simple_repeat 1 39 0 255 286 13 13 chr11 37130568 37130645 -113652908 - MIR SINE MIR -175 87 11 22 0 0 0 chr11 37131177 37131199 -113652354 + AT_rich Low_complexity Low_complexity 1 22 0 199 244 154 26 chr11 37131368 37131446 -113652107 + MIR SINE MIR 20 107 -155 261 298 48 0 chr11 37132166 37132250 -113651303 - MER5A DNA MER1_type -99 90 3 2274 122 0 3 chr11 37133433 37133745 -113649808 - AluSq SINE Alu -2 311 1 230 81 27 0 chr11 37134449 37134486 -113649067 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 2301 105 0 0 chr11 37134530 37134824 -113648729 - AluSg SINE Alu -16 294 1 1300 197 157 10 chr11 37136381 37136681 -113646872 - MER2 DNA MER2_type 0 345 2 417 39 0 0 chr11 37137334 37137385 -113646168 + (TC)n Simple_repeat Simple_repeat 1 51 0 211 292 125 17 chr11 37137494 37137614 -113645939 + MER5B DNA MER1_type 1 133 -45 2209 118 20 0 chr11 37137797 37138103 -113645450 + AluSx SINE Alu 1 312 0 244 268 32 76 chr11 37138214 37138371 -113645182 - L1MC/D LINE L1 -2132 5676 5527 1048 220 79 26 chr11 37140488 37140834 -113642719 + MSTD LTR MaLR 1 396 0 229 340 77 0 chr11 37141553 37141709 -113641844 + MIR3 SINE MIR 34 201 -7 1688 163 179 8 chr11 37142387 37142779 -113640774 + L1MA4A LINE L1 5822 6280 -23 550 273 59 11 chr11 37143761 37143948 -113639605 + MIR SINE MIR 28 223 -39 726 168 37 47 chr11 37144328 37144519 -113639034 - MER53 DNA DNA 0 189 1 23 0 0 0 chr11 37146897 37146920 -113636633 + AT_rich Low_complexity Low_complexity 1 23 0 380 286 11 0 chr11 37147908 37147999 -113635554 + MER58 DNA MER1_type 1 92 -249 861 174 64 6 chr11 37148005 37148177 -113635376 - MLT1A1 LTR MaLR 0 365 184 23 33 0 0 chr11 37148186 37148216 -113635337 + AT_rich Low_complexity Low_complexity 1 30 0 1900 145 0 30 chr11 37148225 37148522 -113635031 - AluJb SINE Alu -23 289 2 1654 213 30 11 chr11 37148565 37148919 -113634634 - MLT1A1 LTR MaLR -1 364 3 490 65 0 0 chr11 37148919 37148980 -113634573 + MADE1 DNA Mariner 20 80 0 240 35 0 0 chr11 37149856 37149885 -113633668 + (TA)n Simple_repeat Simple_repeat 2 30 0 189 0 0 0 chr11 37149902 37149923 -113633630 + (GA)n Simple_repeat Simple_repeat 2 22 0 2084 102 4 4 chr11 37149929 37150195 -113633358 - AluSg SINE Alu -40 270 5 30 27 0 0 chr11 37150898 37150935 -113632618 + AT_rich Low_complexity Low_complexity 1 37 0 437 301 45 17 chr11 37151025 37151201 -113632352 - MIR SINE MIR -3 259 79 381 271 53 0 chr11 37151243 37151376 -113632177 + MIR SINE MIR 48 187 -75 271 222 16 0 chr11 37151381 37151444 -113632109 - MIR SINE MIR -5 257 194 2359 156 73 26 chr11 37151740 37152203 -113631350 - MER31A LTR ERV1 0 485 1 376 238 90 25 chr11 37152220 37152342 -113631211 - L2 LINE L2 -5 3267 3138 202 351 36 24 chr11 37152576 37152741 -113630812 - L2 LINE L2 -407 2907 2741 198 296 51 41 chr11 37153193 37153208 -113630345 + MER5A DNA MER1_type 4 19 -170 322 274 84 17 chr11 37153208 37153354 -113630199 - MER5A DNA MER1_type -3 186 14 1448 181 21 42 chr11 37153907 37154195 -113629358 + AluJo SINE Alu 5 286 -16 188 33 0 33 chr11 37154199 37154229 -113629324 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 188 261 0 0 chr11 37155310 37155356 -113628197 + MIR SINE MIR 104 149 -113 356 362 18 0 chr11 37155975 37156138 -113627415 + MIR SINE MIR 71 236 -26 237 33 0 0 chr11 37156248 37156278 -113627275 + (TC)n Simple_repeat Simple_repeat 1 30 0 2202 139 0 0 chr11 37157695 37158004 -113625549 + AluSx SINE Alu 1 309 -3 500 306 100 30 chr11 37158795 37159240 -113624313 - L1ME4a LINE L1 -213 5908 5435 268 290 24 48 chr11 37162734 37162858 -113620695 - MIR SINE MIR -71 191 71 203 265 20 0 chr11 37163364 37163413 -113620140 + MIR SINE MIR 100 149 -59 331 303 77 19 chr11 37163912 37164067 -113619486 - MIR SINE MIR -85 177 14 225 0 0 0 chr11 37164688 37164713 -113618840 + (CA)n Simple_repeat Simple_repeat 2 26 0 214 305 0 63 chr11 37164747 37164842 -113618711 - MIR3 SINE MIR -9 199 111 674 296 30 5 chr11 37164906 37165105 -113618448 - MIR SINE MIR -57 205 2 216 0 0 0 chr11 37165145 37165169 -113618384 + (TA)n Simple_repeat Simple_repeat 1 24 0 238 158 0 0 chr11 37165213 37165251 -113618302 + MIR SINE MIR 117 154 -108 276 276 87 51 chr11 37166072 37166239 -113617314 + MIR SINE MIR 34 202 -6 761 254 51 10 chr11 37166757 37166954 -113616599 - MIR SINE MIR -26 236 32 1093 244 57 51 chr11 37168634 37168794 -113614759 + L1ME1 LINE L1 5807 5965 -201 2131 134 0 3 chr11 37168794 37169099 -113614454 + AluSx SINE Alu 1 304 -8 1093 244 57 51 chr11 37169099 37169291 -113614262 + L1ME1 LINE L1 5965 6161 -5 455 239 228 17 chr11 37169407 37169587 -113613966 - MIR SINE MIR -18 244 27 266 284 31 63 chr11 37169613 37169740 -113613813 - L2 LINE L2 -226 3046 2924 2207 118 0 0 chr11 37170224 37170520 -113613033 - AluSx SINE Alu -16 296 1 2214 87 0 11 chr11 37170707 37170993 -113612560 + AluSp SINE Alu 30 312 -1 21 0 0 0 chr11 37171682 37171703 -113611850 + AT_rich Low_complexity Low_complexity 1 21 0 235 252 201 44 chr11 37171785 37171944 -113611609 - MIR SINE MIR -30 232 49 1238 200 121 50 chr11 37172057 37172397 -113611156 + MLT1A1 LTR MaLR 2 365 0 22 0 0 0 chr11 37172788 37172810 -113610743 + AT_rich Low_complexity Low_complexity 1 22 0 400 256 116 0 chr11 37172940 37173069 -113610484 + MIR3 SINE MIR 3 146 -62 420 221 10 19 chr11 37174129 37174263 -113609290 - MER5A DNA MER1_type -6 183 1 683 305 52 0 chr11 37174393 37174603 -113608950 - MIR SINE MIR -3 259 39 231 114 0 0 chr11 37174660 37174695 -113608858 + (CA)n Simple_repeat Simple_repeat 2 36 0 225 313 0 0 chr11 37175510 37175577 -113607976 - L2 LINE L2 -72 3241 3175 249 305 195 17 chr11 37175755 37175929 -113607624 - MIR SINE MIR -50 212 8 460 163 0 0 chr11 37176111 37176191 -113607362 + MER116 DNA Mariner 1 80 0 890 343 163 18 chr11 37176980 37177405 -113606148 + L2 LINE L2 1492 1854 -1460 1781 130 0 4 chr11 37177405 37177659 -113605894 - AluSg SINE Alu -21 289 37 890 343 163 18 chr11 37177659 37178424 -113605129 + L2 LINE L2 1854 2855 -459 222 284 40 27 chr11 37178710 37178784 -113604769 + L2 LINE L2 3239 3313 0 21 57 0 0 chr11 37179100 37179135 -113604418 + AT_rich Low_complexity Low_complexity 1 35 0 2008 130 11 0 chr11 37179145 37179429 -113604124 - AluSx SINE Alu -25 287 1 308 246 70 16 chr11 37179889 37179914 -113603639 - MIR SINE MIR -75 133 111 2278 151 14 27 chr11 37179914 37180284 -113603269 - MLT1A1 LTR MaLR 0 365 1 308 246 70 16 chr11 37180284 37180367 -113603186 - MIR SINE MIR -97 111 17 452 281 49 58 chr11 37180381 37180564 -113602989 + MIR SINE MIR 28 210 -52 1865 144 47 0 chr11 37180564 37180862 -113602691 - AluSx SINE Alu 0 312 1 452 281 49 58 chr11 37180862 37180902 -113602651 + MIR SINE MIR 210 249 -13 219 231 0 0 chr11 37180905 37180944 -113602609 + (CACCAT)n Simple_repeat Simple_repeat 2 40 0 3364 102 15 11 chr11 37181070 37181533 -113602020 - MER4C LTR ERV1 0 465 1 25 0 0 0 chr11 37181770 37181795 -113601758 + AT_rich Low_complexity Low_complexity 1 25 0 684 248 74 45 chr11 37181803 37182045 -113601508 - MIR SINE MIR -3 259 11 753 300 25 12 chr11 37183219 37183462 -113600091 - MIR SINE MIR -15 247 2 1958 83 20 0 chr11 37184057 37184311 -113599242 + AluY SINE Alu 44 302 -9 241 309 15 0 chr11 37185412 37185480 -113598073 - L2 LINE L2 -6 3307 3239 2296 96 0 7 chr11 37185771 37186073 -113597480 - AluSp SINE Alu -13 300 1 440 191 61 35 chr11 37186140 37186255 -113597298 + L2 LINE L2 3192 3309 -4 216 307 13 0 chr11 37189684 37189759 -113593794 + MIR SINE MIR 174 249 -13 2179 105 3 16 chr11 37190291 37190597 -113592956 - AluY SINE Alu -9 302 1 458 291 81 12 chr11 37193035 37193207 -113590346 + MIR3 SINE MIR 2 185 -23 1148 233 84 23 chr11 37198263 37198607 -113584946 - MLT1I LTR MaLR -42 367 3 226 335 50 55 chr11 37199435 37199617 -113583936 + MIR3 SINE MIR 11 191 -17 488 274 52 41 chr11 37199971 37200241 -113583312 - L1ME3A LINE L1 -221 5949 5677 1339 215 68 24 chr11 37201150 37201489 -113582064 - MLT1A1 LTR MaLR -11 354 1 414 277 136 16 chr11 37202603 37202787 -113580766 + MIR SINE MIR 52 257 -5 183 186 0 0 chr11 37202788 37202831 -113580722 + (CAT)n Simple_repeat Simple_repeat 1 43 0 27 73 0 0 chr11 37203611 37203666 -113579887 + AT_rich Low_complexity Low_complexity 1 55 0 763 268 74 16 chr11 37203666 37204050 -113579503 - LTR16A1 LTR ERVL 0 457 3 417 235 0 0 chr11 37204101 37204182 -113579371 - MIR SINE MIR -74 188 108 299 314 25 0 chr11 37204627 37204748 -113578805 + MER117 DNA MER1_type 74 197 0 671 243 79 126 chr11 37204751 37205179 -113578374 - MLT1I LTR MaLR -1 408 1 1474 170 55 19 chr11 37205570 37205861 -113577692 - AluSx SINE Alu 0 301 1 525 318 31 10 chr11 37206511 37206703 -113576850 + MLT1I LTR MaLR 185 380 -29 286 296 229 22 chr11 37207261 37207440 -113576113 - MIR SINE MIR -9 253 38 226 348 56 44 chr11 37207658 37207977 -113575576 - HAL1 LINE L1 -2184 323 1 204 283 40 61 chr11 37208332 37208431 -113575122 - L2 LINE L2 -3 3269 3173 1857 151 10 0 chr11 37208557 37208849 -113574704 - AluSx SINE Alu -13 299 5 282 214 0 18 chr11 37208962 37209018 -113574535 + Tigger5 DNA MER2_type 1 55 -2268 318 192 192 0 chr11 37209028 37209101 -113574452 + Tigger5 DNA MER2_type 2237 2323 0 437 266 114 13 chr11 37210141 37210299 -113573254 + MIR SINE MIR 2 175 -87 366 238 183 0 chr11 37210336 37210462 -113573091 - MIR SINE MIR -32 230 82 266 254 0 16 chr11 37210445 37210508 -113573045 + MIR SINE MIR 184 245 -17 * 244 190 0 127 chr11 37210592 37210671 -113572882 + L2 LINE L2 3204 3272 0 604 282 47 0 chr11 37212116 37212286 -113571267 - MIR SINE MIR -53 209 32 214 309 73 9 chr11 37212865 37212975 -113570578 + MIR SINE MIR 17 133 -129 367 279 177 14 chr11 37213446 37213661 -113569892 - MIR SINE MIR -6 256 7 1497 247 116 49 chr11 37213846 37214357 -113569196 + MLT1H LTR MaLR 5 549 0 4421 254 65 40 chr11 37214443 37215751 -113567802 - HAL1 LINE L1 -648 1859 493 1726 178 16 10 chr11 37215751 37216060 -113567493 - AluJb SINE Alu -1 311 1 4421 254 65 40 chr11 37216060 37216566 -113566987 - HAL1 LINE L1 -2014 493 1 202 274 0 0 chr11 37218167 37218218 -113565335 + GA-rich Low_complexity Low_complexity 2 52 0 189 94 0 0 chr11 37219022 37219054 -113564499 + (A)n Simple_repeat Simple_repeat 1 32 0 785 170 15 85 chr11 37220321 37220521 -113563032 + MER5A DNA MER1_type 1 186 -3 432 253 45 52 chr11 37220530 37220684 -113562869 - MIR SINE MIR -90 172 20 634 255 25 30 chr11 37221244 37221455 -113562098 - MIR SINE MIR -48 214 1 1984 153 0 0 chr11 37221771 37222065 -113561488 + AluJb SINE Alu 1 294 -18 2159 117 9 25 chr11 37222067 37222384 -113561169 + AluSx SINE Alu 1 312 0 469 228 16 24 chr11 37222397 37222524 -113561029 + MIR SINE MIR 50 175 -87 214 231 0 0 chr11 37222654 37222693 -113560860 + MIR SINE MIR 206 244 -18 343 305 84 38 chr11 37223270 37223401 -113560152 - MIR3 SINE MIR -31 177 41 243 0 0 0 chr11 37223403 37223430 -113560123 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2037 131 10 0 chr11 37223432 37223722 -113559831 - AluSx SINE Alu -19 293 1 1196 149 40 0 chr11 37224036 37224237 -113559316 - MER3 DNA MER1_type 0 209 1 1714 119 36 25 chr11 37224493 37224803 -113558750 - AluJb SINE Alu 0 313 1 205 233 0 0 chr11 37225147 37225190 -113558363 + MIR SINE MIR 212 254 -8 229 371 32 24 chr11 37225218 37225342 -113558211 + L2 LINE L2 3147 3271 -1 253 68 45 0 chr11 37226622 37226666 -113556887 + (TA)n Simple_repeat Simple_repeat 1 46 0 462 235 176 7 chr11 37227305 37227458 -113556095 - MER5A DNA MER1_type -7 182 4 2295 95 20 0 chr11 37228198 37228493 -113555060 + AluSg SINE Alu 1 301 -9 383 332 56 31 chr11 37230176 37230372 -113553181 + MIR SINE MIR 2 202 -60 448 243 200 7 chr11 37230427 37230567 -113552986 + MER5A DNA MER1_type 9 175 -14 2107 119 0 0 chr11 37230644 37230921 -113552632 + AluSc SINE Alu 15 291 -18 855 123 0 23 chr11 37231170 37231300 -113552253 + FLAM_C SINE Alu 2 128 -5 24 32 0 0 chr11 37231300 37231331 -113552222 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr11 37231961 37231989 -113551564 + AT_rich Low_complexity Low_complexity 1 28 0 533 242 158 42 chr11 37232335 37232500 -113551053 - MER5A DNA MER1_type -5 184 1 352 227 36 78 chr11 37232584 37232704 -113550849 - MIR SINE MIR -27 181 70 643 258 0 25 chr11 37233156 37233319 -113550234 + MIR SINE MIR 41 199 -63 254 161 0 149 chr11 37233323 37233354 -113550199 + MER116 DNA Mariner 7 41 -39 2243 90 33 7 chr11 37233354 37233655 -113549898 - AluSg SINE Alu -1 309 1 254 161 0 149 chr11 37233655 37233710 -113549843 + MER116 DNA Mariner 41 80 0 275 254 0 30 chr11 37233710 37233777 -113549776 + MIR SINE MIR 197 261 -1 * 542 268 91 27 chr11 37233776 37233996 -113549557 - MIR SINE MIR -27 235 2 1013 196 11 16 chr11 37234063 37234252 -113549301 + MER5A DNA MER1_type 1 188 -1 452 86 14 0 chr11 37235498 37235568 -113547985 + (CACCAT)n Simple_repeat Simple_repeat 5 75 0 1709 134 0 4 chr11 37235594 37235840 -113547713 - AluSx SINE Alu -19 293 49 2306 93 10 0 chr11 37236133 37236424 -113547129 + AluSx SINE Alu 1 294 -18 965 68 0 0 chr11 37236736 37236854 -113546699 + AluSp/q SINE Alu 177 294 -19 325 219 14 0 chr11 37237417 37237490 -113546063 + MER116 DNA Mariner 5 78 -2 320 77 19 0 chr11 37237544 37237596 -113545957 + (CA)n Simple_repeat Simple_repeat 2 54 0 1542 155 3 23 chr11 37238601 37238905 -113544648 + L1P LINE L1 2758 3055 -3091 24 32 0 0 chr11 37238905 37238936 -113544617 + AT_rich Low_complexity Low_complexity 1 31 0 278 379 26 0 chr11 37244889 37245005 -113538548 - MIR3 SINE MIR -27 181 63 249 57 0 0 chr11 37249287 37249322 -113534231 + (A)n Simple_repeat Simple_repeat 1 35 0 2073 69 66 31 chr11 37250272 37250560 -113532993 - AluY SINE Alu -13 298 1 297 318 45 0 chr11 37250597 37250685 -113532868 + L2 LINE L2 3133 3224 -48 316 336 71 0 chr11 37252690 37252830 -113530723 - MIR3 SINE MIR -11 197 48 * 713 305 111 29 chr11 37252807 37253148 -113530405 + L3 LINE CR1 1207 1575 -2 1427 116 65 0 chr11 37255890 37256106 -113527447 - MER30 DNA MER1_type 0 230 1 201 74 0 0 chr11 37256446 37256473 -113527080 + (A)n Simple_repeat Simple_repeat 1 27 0 337 234 187 9 chr11 37257205 37257312 -113526241 + L2 LINE L2 3188 3313 0 220 297 40 14 chr11 37257355 37257429 -113526124 + L2 LINE L2 3191 3266 -6 935 62 78 0 chr11 37258625 37258754 -113524799 - MER85 DNA T2_type 0 139 1 308 219 187 61 chr11 37259610 37259791 -113523762 + MIR SINE MIR 37 249 -13 2105 135 0 0 chr11 37260305 37260601 -113522952 - AluSx SINE Alu -16 296 1 194 300 178 22 chr11 37260845 37260935 -113522618 - MIR SINE MIR -65 143 40 843 117 0 0 chr11 37261252 37261363 -113522190 + FLAM_C SINE Alu 1 111 -32 981 226 120 32 chr11 37261420 37261854 -113521699 - MER113 DNA MER1_type? -45 476 5 2256 125 0 3 chr11 37261963 37262266 -113521287 - AluSx SINE Alu -10 302 1 323 222 156 0 chr11 37262664 37262754 -113520799 - L2 LINE L2 0 3272 3169 248 28 56 0 chr11 37263634 37263670 -113519883 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 308 244 73 155 chr11 37264007 37264323 -113519230 + L2 LINE L2 3023 3312 -1 274 325 32 57 chr11 37265915 37266038 -113517515 + L2 LINE L2 3137 3256 -16 248 171 24 37 chr11 37267141 37267223 -113516330 + (TATATG)n Simple_repeat Simple_repeat 1 81 0 647 64 64 17 chr11 37267223 37267395 -113516158 + (TA)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr11 37267395 37267418 -113516135 + AT_rich Low_complexity Low_complexity 1 23 0 685 148 0 11 chr11 37267418 37267600 -113515953 + (TA)n Simple_repeat Simple_repeat 1 180 0 249 285 223 8 chr11 37268144 37268274 -113515279 + L2 LINE L2 2712 2869 -445 374 223 53 87 chr11 37268295 37268410 -113515143 + L2 LINE L2 3039 3145 -168 1471 139 13 13 chr11 37268410 37268640 -113514913 - MER30 DNA MER1_type 0 230 1 374 223 53 87 chr11 37268640 37268730 -113514823 + L2 LINE L2 3145 3237 -76 224 241 207 26 chr11 37270787 37270903 -113512650 + MIR SINE MIR 56 192 -70 1086 197 10 10 chr11 37271284 37271492 -113512061 + MER3 DNA MER1_type 1 208 -1 2372 102 3 13 chr11 37272779 37272915 -113510638 + AluSx SINE Alu 1 137 -175 2716 45 0 0 chr11 37272915 37273225 -113510328 + AluY SINE Alu 1 310 -1 2372 102 3 13 chr11 37273225 37273403 -113510150 + AluSx SINE Alu 137 312 0 255 298 12 12 chr11 37273709 37273793 -113509760 + (CATA)n Simple_repeat Simple_repeat 2 85 0 243 280 42 59 chr11 37273793 37273911 -113509642 - L1ME4a LINE L1 -158 5963 5848 665 339 117 19 chr11 37273922 37274460 -113509093 + L2 LINE L2 2722 3313 0 181 186 68 17 chr11 37274718 37274777 -113508776 - MIR SINE MIR -103 159 98 245 220 161 51 chr11 37275001 37275119 -113508434 - MIR SINE MIR -60 148 18 348 291 8 8 chr11 37275258 37275375 -113508178 - MIR SINE MIR -140 122 6 8653 111 6 27 chr11 37276332 37277660 -113505893 + HSMAR2 DNA Mariner 2 1301 -1 683 202 0 66 chr11 37278151 37278334 -113505219 - MIR SINE MIR -8 254 84 375 322 68 17 chr11 37279007 37279184 -113504369 + MIR SINE MIR 51 236 -26 667 231 45 0 chr11 37279212 37279368 -113504185 - MIR SINE MIR -49 213 51 294 73 0 0 chr11 37279802 37279843 -113503710 + (TG)n Simple_repeat Simple_repeat 2 42 0 338 259 102 9 chr11 37279979 37280087 -113503466 + L2 LINE L2 3155 3272 0 569 249 94 20 chr11 37280753 37280954 -113502599 - MIR SINE MIR -10 252 37 207 25 75 0 chr11 37281948 37281988 -113501565 + A-rich Low_complexity Low_complexity 2 44 0 197 329 12 47 chr11 37283437 37283522 -113500031 + MIR SINE MIR 33 114 -94 490 253 7 39 chr11 37285188 37285342 -113498211 - MIR SINE MIR -7 255 107 201 159 0 0 chr11 37286345 37286389 -113497164 + (TG)n Simple_repeat Simple_repeat 1 44 0 253 294 102 34 chr11 37287118 37287295 -113496258 - L2 LINE L2 -41 3272 3084 369 283 87 40 chr11 37287883 37288056 -113495497 + MIR SINE MIR 47 227 -35 224 57 0 29 chr11 37288317 37288352 -113495201 + (GA)n Simple_repeat Simple_repeat 1 34 0 356 366 11 11 chr11 37288496 37288671 -113494882 + MIR3 SINE MIR 10 184 -24 268 318 28 9 chr11 37289433 37289540 -113494013 + MIR SINE MIR 35 143 -65 562 318 21 0 chr11 37290690 37290879 -113492674 - MIR SINE MIR -16 246 54 680 126 72 11 chr11 37291692 37291958 -113491595 + (TAGA)n Simple_repeat Simple_repeat 1 282 0 341 287 37 9 chr11 37292087 37292195 -113491358 - L2 LINE L2 -23 3290 3180 1367 185 14 25 chr11 37292222 37292498 -113491055 - AluJo SINE Alu -30 282 10 909 249 123 47 chr11 37293988 37294410 -113489143 + MLT1L LTR MaLR 93 546 -69 453 249 65 27 chr11 37295527 37295712 -113487841 + L2 LINE L2 3117 3308 -5 377 271 152 13 chr11 37296073 37296224 -113487329 + MIR3 SINE MIR 19 190 -18 484 226 95 22 chr11 37297629 37297766 -113485787 - MER117 DNA MER1_type -45 152 6 207 263 81 50 chr11 37298249 37298348 -113485205 + L2 LINE L2 3155 3256 -57 183 306 0 12 chr11 37298381 37298466 -113485087 - MIR SINE MIR -113 149 66 181 204 56 0 chr11 37299254 37299308 -113484245 + MIR SINE MIR 79 135 -127 422 321 0 15 chr11 37299567 37299701 -113483852 - MIR3 SINE MIR -11 197 66 181 321 0 0 chr11 37300486 37300539 -113483014 - L2 LINE L2 -14 3299 3247 2476 64 0 7 chr11 37301152 37301449 -113482104 - AluSp SINE Alu -18 295 1 1066 258 16 0 chr11 37302529 37302781 -113480772 + MIR SINE MIR 7 262 0 180 0 0 0 chr11 37305037 37305057 -113478496 + (CCCCAG)n Simple_repeat Simple_repeat 1 20 0 265 357 78 0 chr11 37305730 37305859 -113477694 + MIR SINE MIR 57 195 -67 36397 75 8 10 chr11 37306227 37311848 -113471705 - L1PA6 LINE L1 -87 6067 459 937 148 6 40 chr11 37311850 37312026 -113471527 - MLT1A1 LTR MaLR -195 170 1 570 265 95 16 chr11 37312123 37312312 -113471241 - MIR SINE MIR -12 250 47 365 258 91 15 chr11 37313068 37313200 -113470353 - MER117 DNA MER1_type -45 152 11 1791 178 0 7 chr11 37313512 37313798 -113469755 - AluJo SINE Alu -28 284 1 892 250 177 23 chr11 37314233 37314533 -113469020 - MLT1H LTR MaLR -9 540 195 299 247 14 0 chr11 37315589 37315662 -113467891 - MER117 DNA MER1_type -119 78 5 2417 166 51 0 chr11 37315712 37316127 -113467426 + MLT1C LTR MaLR 1 436 -31 1162 29 50 0 chr11 37316127 37316266 -113467287 - AluY SINE Alu -15 296 151 252 128 26 0 chr11 37316267 37316306 -113467247 + MLT1C LTR MaLR 426 465 -2 217 314 12 12 chr11 37316435 37316521 -113467032 - MIR SINE MIR -65 143 58 194 309 18 0 chr11 37316633 37316688 -113466865 + L2 LINE L2 3207 3262 -10 239 163 20 20 chr11 37317703 37317752 -113465801 - MER45A DNA AcHobo 0 178 130 1221 248 132 62 chr11 37317775 37318335 -113465218 - MER45C DNA AcHobo -354 599 1 230 280 0 0 chr11 37319499 37319549 -113464004 + MIR SINE MIR 98 147 -61 2072 104 0 0 chr11 37320733 37321001 -113462552 - AluSx SINE Alu -5 307 40 532 281 82 92 chr11 37321130 37321297 -113462256 - L2 LINE L2 0 3313 3146 3993 28 2 0 chr11 37321297 37321755 -113461798 - L1PA5 LINE L1 -4 6150 5692 532 281 82 92 chr11 37321755 37322186 -113461367 - L2 LINE L2 -167 3146 2667 1730 151 0 58 chr11 37322255 37322567 -113460986 + AluJb SINE Alu 1 294 -18 440 230 152 11 chr11 37322586 37322764 -113460789 + MER113 DNA MER1_type? 314 516 -5 1804 179 57 7 chr11 37323891 37324236 -113459317 - MLT1A1 LTR MaLR 0 446 13 472 335 22 54 chr11 37324256 37324572 -113458981 - LTR16B LTR ERVL -150 314 9 888 162 39 0 chr11 37325432 37325611 -113457942 - MER53 DNA DNA -2 187 2 592 289 96 19 chr11 37326152 37326360 -113457193 - MER58A DNA MER1_type 0 224 1 2189 46 0 0 chr11 37326903 37327162 -113456391 + L1PA5 LINE L1 5889 6147 -7 189 0 0 0 chr11 37327162 37327183 -113456370 + (TA)n Simple_repeat Simple_repeat 2 22 0 23 33 0 0 chr11 37327664 37327694 -113455859 + AT_rich Low_complexity Low_complexity 1 30 0 655 208 13 7 chr11 37327986 37328004 -113455549 - L1MA10 LINE L1 -3 6331 6314 8149 222 45 57 chr11 37328004 37328755 -113454798 - L1ME1 LINE L1 -13 6547 5789 1939 159 35 40 chr11 37328755 37329132 -113454421 + THE1C LTR MaLR 1 375 0 8149 222 45 57 chr11 37329132 37329601 -113453952 - L1ME1 LINE L1 -771 5789 5316 291 28 0 0 chr11 37329601 37329637 -113453916 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 8149 222 45 57 chr11 37329637 37330243 -113453310 - L1ME1 LINE L1 -1244 5316 4705 1637 151 42 45 chr11 37330243 37330554 -113452999 - AluJb SINE Alu -2 310 1 8149 222 45 57 chr11 37330554 37331562 -113451991 - L1ME1 LINE L1 -1855 4705 3775 2301 101 0 3 chr11 37331562 37331860 -113451693 - AluY SINE Alu -14 297 1 8149 222 45 57 chr11 37331860 37332741 -113450812 - L1ME1 LINE L1 -2785 3775 2885 5975 207 50 46 chr11 37332718 37334169 -113449384 - L1ME1 LINE L1 -5083 1457 2 * 719 203 8 0 chr11 37334278 37334406 -113449147 - FLAM_C SINE Alu 0 133 5 4208 103 12 8 chr11 37334600 37335202 -113448351 + L1PA13 LINE L1 5551 6154 -9 30 69 0 0 chr11 37335202 37335260 -113448293 + AT_rich Low_complexity Low_complexity 1 58 0 292 274 36 0 chr11 37337400 37337484 -113446069 + L2 LINE L2 3184 3270 -2 1841 228 157 13 chr11 37339137 37339924 -113443629 + L2 LINE L2 2151 3074 -239 1494 252 44 25 chr11 37340069 37340542 -113443011 - MER74B LTR ERVL -74 548 67 388 242 0 30 chr11 37340559 37340658 -113442895 + L2 LINE L2 3182 3277 -36 1911 24 0 0 chr11 37341727 37341939 -113441614 - L1P1 LINE L1 -387 5768 5557 251 125 71 0 chr11 37341916 37341972 -113441581 + L1PA3 LINE L1 6096 6155 0 * 567 323 44 8 chr11 37342864 37343112 -113440441 + MIR SINE MIR 1 257 -5 1944 150 10 3 chr11 37343124 37343417 -113440136 - AluSx SINE Alu -17 295 1 198 143 0 0 chr11 37345741 37345776 -113437777 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 385 313 7 14 chr11 37345803 37345950 -113437603 + (TCCA)n Simple_repeat Simple_repeat 1 146 0 320 321 14 21 chr11 37345982 37346122 -113437431 + (TCCA)n Simple_repeat Simple_repeat 4 142 0 537 225 53 137 chr11 37346835 37347120 -113436433 + MIR SINE MIR 2 262 0 490 227 0 15 chr11 37347350 37347482 -113436071 - L1MB4 LINE L1 -4 6176 6047 187 369 35 0 chr11 37348734 37348875 -113434678 + MIR SINE MIR 102 247 -15 180 364 58 8 chr11 37348867 37348988 -113434565 + L2 LINE L2 3146 3272 0 * 34 0 0 0 chr11 37349983 37350017 -113433536 + AT_rich Low_complexity Low_complexity 1 34 0 300 323 10 0 chr11 37350278 37350374 -113433179 + (CACCAT)n Simple_repeat Simple_repeat 2 98 0 411 202 91 0 chr11 37350571 37350670 -113432883 - MIR SINE MIR -71 191 84 238 315 11 11 chr11 37352481 37352570 -113430983 - L2 LINE L2 -1 3312 3224 679 312 15 0 chr11 37352683 37352885 -113430668 - L2 LINE L2 -357 2957 2753 468 335 22 0 chr11 37352892 37353074 -113430479 + MER117 DNA MER1_type 12 197 0 549 280 85 74 chr11 37353094 37353458 -113430095 - MLT1I LTR MaLR 0 409 42 2346 100 0 10 chr11 37353585 37353895 -113429658 + AluY SINE Alu 1 307 -4 184 283 17 0 chr11 37354131 37354191 -113429362 + MIR SINE MIR 74 134 -128 2555 54 3 19 chr11 37354555 37354871 -113428682 - AluY SINE Alu 0 311 1 962 245 29 17 chr11 37354871 37355112 -113428441 - MLT1J1 LTR MaLR -166 280 37 2364 93 0 3 chr11 37355582 37355882 -113427671 - AluSp SINE Alu -14 299 1 1033 141 46 72 chr11 37355892 37356155 -113427398 - L1MC5 LINE L1 -38 7923 7668 288 0 0 0 chr11 37356271 37356303 -113427250 + (CA)n Simple_repeat Simple_repeat 1 32 0 226 314 25 16 chr11 37357190 37357311 -113426242 + CT-rich Low_complexity Low_complexity 2 123 0 258 31 0 0 chr11 37357497 37357529 -113426024 - MADE1 DNA Mariner 0 80 49 270 287 0 11 chr11 37357906 37357993 -113425560 - MIR SINE MIR -131 131 46 3584 101 2 4 chr11 37358859 37359362 -113424191 - L1PA8 LINE L1 -4 6168 5667 597 262 20 0 chr11 37359630 37359779 -113423774 + MIR SINE MIR 34 185 -77 21 0 0 0 chr11 37359781 37359802 -113423751 + AT_rich Low_complexity Low_complexity 1 21 0 204 235 20 0 chr11 37359827 37359878 -113423675 + (CTA)n Simple_repeat Simple_repeat 2 53 0 648 275 107 47 chr11 37361063 37361401 -113422152 - MLT1L LTR MaLR -9 606 249 213 226 262 60 chr11 37361632 37361716 -113421837 + MIR SINE MIR 110 210 -52 4129 137 30 47 chr11 37361930 37362692 -113420861 + L1MB2 LINE L1 5415 6163 -8 256 269 14 97 chr11 37362711 37362856 -113420697 + L1ME4a LINE L1 5466 5598 -2210 955 248 56 67 chr11 37363220 37363579 -113419974 - MLT1J2 LTR MaLR -2 448 94 277 135 39 0 chr11 37364108 37364196 -113419357 - AluJo SINE Alu 0 338 249 1235 204 0 5 chr11 37364196 37364417 -113419136 - AluJo SINE Alu -88 224 5 338 258 125 55 chr11 37364920 37365274 -113418279 - MLT1L LTR MaLR -11 577 176 372 272 26 18 chr11 37366044 37366158 -113417395 - MIR SINE MIR -137 125 11 517 267 114 14 chr11 37366158 37366368 -113417185 - MIR SINE MIR 0 262 32 376 374 79 0 chr11 37366649 37366876 -113416677 + MIR SINE MIR 14 258 -4 434 293 105 0 chr11 37367601 37367734 -113415819 - MIR3 SINE MIR -9 199 53 331 269 181 22 chr11 37367971 37368198 -113415355 + L1ME4a LINE L1 5843 6105 -16 262 244 70 35 chr11 37369134 37369220 -113414333 + MIR SINE MIR 56 144 -118 1536 217 18 15 chr11 37369264 37369601 -113413952 + MER58B DNA MER1_type 1 338 -3 535 234 16 24 chr11 37369813 37369937 -113413616 + MIR SINE MIR 34 156 -106 * 766 298 70 8 chr11 37369932 37370174 -113413379 - MIR SINE MIR -1 261 5 3428 163 44 16 chr11 37370246 37370946 -113412607 - L1MA8 LINE L1 -3 6288 5569 22 0 0 0 chr11 37371534 37371556 -113411997 + GC_rich Low_complexity Low_complexity 1 22 0 589 235 118 38 chr11 37371818 37372056 -113411497 + MIR SINE MIR 4 260 -2 234 191 0 21 chr11 37372163 37372210 -113411343 - L2 LINE L2 -8 3264 3219 296 237 175 26 chr11 37373112 37373226 -113410327 + MIR3 SINE MIR 15 145 -63 602 283 120 37 chr11 37373607 37373989 -113409564 + MLT1J LTR MaLR 1 414 -97 207 288 64 40 chr11 37374196 37374321 -113409232 + L2 LINE L2 3145 3272 0 4759 137 69 69 chr11 37374519 37375420 -113408133 - THE1C-int LTR MaLR -679 901 1 2721 90 14 11 chr11 37375427 37375795 -113407758 - THE1C LTR MaLR -6 369 1 363 239 0 0 chr11 37375814 37375885 -113407668 - LTR67 LTR ERVL -484 73 3 2013 166 27 27 chr11 37375940 37376307 -113407246 - THE1C LTR MaLR -8 367 1 21 0 0 0 chr11 37376312 37376333 -113407220 + AT_rich Low_complexity Low_complexity 1 21 0 333 293 88 7 chr11 37376549 37376696 -113406857 - LTR33 LTR ERVL -2 519 361 258 272 254 35 chr11 37377005 37377237 -113406316 + LTR16C LTR ERVL 209 491 0 733 278 142 0 chr11 37377248 37377460 -113406093 - LTR33 LTR ERVL -264 257 16 1226 310 85 34 chr11 37377651 37378358 -113405195 - ERVL LTR ERVL -384 5380 4638 1883 218 111 20 chr11 37378375 37378902 -113404651 + MLT1F1 LTR MaLR 2 567 0 1731 313 35 30 chr11 37378904 37379611 -113403942 - ERVL LTR ERVL -1140 4624 3914 1331 260 131 13 chr11 37380254 37380712 -113402841 - LTR33 LTR ERVL -7 514 3 196 218 18 36 chr11 37380800 37380855 -113402698 + MIR3 SINE MIR 107 160 -48 374 332 58 26 chr11 37381688 37381878 -113401675 - L2 LINE L2 0 3313 3118 681 198 12 76 chr11 37381894 37382066 -113401487 - MER58B DNA MER1_type 0 341 181 297 365 144 5 chr11 37382133 37382393 -113401160 - L2 LINE L2 -296 3017 2721 434 246 110 8 chr11 37382551 37382669 -113400884 - MIR3 SINE MIR -28 180 51 2199 85 3 0 chr11 37383622 37383915 -113399638 - AluSp SINE Alu -4 309 16 579 346 90 45 chr11 37384882 37385393 -113398160 + LTR67 LTR ERVL 19 552 -5 327 247 144 31 chr11 37385705 37385802 -113397751 - MIR SINE MIR -59 203 96 3403 133 9 9 chr11 37386350 37386901 -113396652 - L1PA10 LINE L1 -4 6164 5614 790 122 0 0 chr11 37386901 37387008 -113396545 + L1PA10 LINE L1 5519 5628 -540 1223 185 14 5 chr11 37387161 37387372 -113396181 - MLT1A1 LTR MaLR -6 359 147 366 23 0 0 chr11 37387372 37387415 -113396138 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1883 73 8 0 chr11 37387415 37387661 -113395892 - L1PA6 LINE L1 -11 6143 5896 235 314 116 16 chr11 37387761 37387882 -113395671 + MIR SINE MIR 124 256 -6 2182 144 0 0 chr11 37388149 37388462 -113395091 + MER1A DNA MER1_type 85 397 -132 9642 54 0 1 chr11 37388462 37389667 -113393886 + L1P LINE L1 3300 4503 -1643 602 96 48 10 chr11 37390055 37390159 -113393394 + L1P LINE L1 4512 4619 -1527 207 289 29 48 chr11 37390578 37390682 -113392871 + MIR SINE MIR 52 153 -109 447 265 152 13 chr11 37391194 37391345 -113392208 - MIR3 SINE MIR -18 190 19 521 274 112 35 chr11 37391703 37391962 -113391591 - L2 LINE L2 -2 3311 3033 505 127 0 0 chr11 37442494 37442596 -113340957 + AluSg/x SINE Alu 210 311 0 6059 99 0 1 chr11 37442598 37443418 -113340135 + L1PA8 LINE L1 5354 6172 0 549 231 19 58 chr11 37443449 37443657 -113339896 + L1ME LINE L1 801 1000 -5070 197 255 160 9 chr11 37443977 37444083 -113339470 - L2 LINE L2 -61 3211 3090 659 276 107 0 chr11 37444148 37444373 -113339180 - MIR SINE MIR -1 261 13 606 248 62 62 chr11 37444615 37444841 -113338712 - MIR SINE MIR -12 250 25 309 68 0 0 chr11 37445229 37445273 -113338280 + (CA)n Simple_repeat Simple_repeat 2 45 0 497 287 44 17 chr11 37446454 37446635 -113336918 - MIR SINE MIR -73 189 4 283 296 40 8 chr11 37446663 37446788 -113336765 + MIR SINE MIR 72 200 -62 414 278 232 8 chr11 37446803 37447044 -113336509 - L2 LINE L2 0 3313 3019 398 194 0 0 chr11 37447050 37447122 -113336431 - AluJ/FRAM SINE Alu 0 302 231 2539 115 27 0 chr11 37447455 37447820 -113335733 - THE1C LTR MaLR 0 375 1 1061 238 5 5 chr11 37448211 37448425 -113335128 - MER58A DNA MER1_type -8 216 3 370 318 67 41 chr11 37449006 37449201 -113334352 + MIR SINE MIR 24 223 -39 249 291 25 0 chr11 37450068 37450147 -113333406 + L2 LINE L2 3233 3313 0 1129 300 50 18 chr11 37450906 37451748 -113331805 + L2 LINE L2 2435 3312 -1 476 301 127 33 chr11 37452691 37453023 -113330530 - L2 LINE L2 -16 3297 2935 461 252 16 16 chr11 37453692 37453815 -113329738 - MIR SINE MIR -112 150 28 395 291 70 6 chr11 37453870 37454028 -113329525 + MIR SINE MIR 79 246 -16 410 224 116 48 chr11 37455329 37455476 -113328077 - MER103 DNA DNA -8 158 2 315 226 36 12 chr11 37456531 37456615 -113326938 - MER94 DNA DNA -43 91 6 764 320 36 13 chr11 37456749 37457154 -113326399 - LTR16A1 LTR ERVL -2 481 72 2544 65 3 0 chr11 37457345 37457652 -113325901 - AluY SINE Alu -3 308 1 1205 122 26 74 chr11 37459462 37459692 -113323861 + MER20 DNA MER1_type 1 219 0 471 278 61 53 chr11 37459692 37460066 -113323487 - L1ME4a LINE L1 -188 5933 5547 403 328 5 29 chr11 37461225 37461429 -113322124 + MIR SINE MIR 16 214 -48 216 67 0 0 chr11 37462448 37462478 -113321075 + (TG)n Simple_repeat Simple_repeat 2 31 0 6372 28 17 16 chr11 37463023 37463785 -113319768 + L1PA5 LINE L1 5392 6154 0 240 293 71 0 chr11 37464083 37464182 -113319371 - MIR SINE MIR -26 236 131 199 208 21 21 chr11 37464180 37464228 -113319325 - L2 LINE L2 -4 3309 3262 * 21 36 0 0 chr11 37465728 37465756 -113317797 + AT_rich Low_complexity Low_complexity 1 28 0 1044 299 28 30 chr11 37466089 37466484 -113317069 + LTR16C LTR ERVL 98 491 0 2251 183 68 32 chr11 37466535 37467037 -113316516 - MLT2B1 LTR ERVL 0 520 1 630 233 44 44 chr11 37469489 37469695 -113313858 - LTR16A1 LTR ERVL 0 457 252 317 307 79 16 chr11 37470928 37471055 -113312498 - MIR SINE MIR -62 200 66 278 196 118 0 chr11 37471090 37471141 -113312412 - L2 LINE L2 -11 3302 3246 642 307 50 24 chr11 37471582 37472077 -113311476 - L1MEd LINE L1 -4880 1239 732 2143 141 32 9 chr11 37472082 37472430 -113311123 - MLT1A1 LTR MaLR 0 365 10 520 266 88 16 chr11 37473278 37473470 -113310083 - Charlie8 DNA MER1_type -2199 218 13 270 0 0 0 chr11 37473939 37473969 -113309584 + (T)n Simple_repeat Simple_repeat 1 30 0 25863 169 30 31 chr11 37474047 37476596 -113306957 + L1PA10 LINE L1 2 2551 -3910 2264 87 3 7 chr11 37476596 37476896 -113306657 + AluY SINE Alu 1 299 -12 25863 169 30 31 chr11 37476896 37479952 -113303601 + L1PA10 LINE L1 2551 5671 -790 971 120 7 0 chr11 37479954 37480104 -113303449 - L1P LINE L1 -1356 4790 4640 * 5720 86 21 8 chr11 37480101 37480901 -113302652 + L1PA10 LINE L1 5672 6482 -1 931 190 34 11 chr11 37480990 37481169 -113302384 + L1PA16 LINE L1 5975 6157 -9 1869 154 31 0 chr11 37481206 37481499 -113302054 + AluJb SINE Alu 11 312 0 1165 249 29 87 chr11 37485017 37485534 -113298019 + L2 LINE L2 2827 3313 0 371 278 14 42 chr11 37485550 37485694 -113297859 + MIR SINE MIR 51 190 -72 936 208 22 98 chr11 37485700 37485974 -113297579 - MIR SINE MIR -2 260 8 315 0 0 0 chr11 37487407 37487442 -113296111 + (TG)n Simple_repeat Simple_repeat 1 35 0 261 128 0 0 chr11 37487444 37487491 -113296062 + (GA)n Simple_repeat Simple_repeat 2 48 0 1841 158 0 17 chr11 37487514 37487805 -113295748 + AluSx SINE Alu 1 286 -26 224 54 54 0 chr11 37487812 37487849 -113295704 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 960 115 0 8 chr11 37488594 37488724 -113294829 + AluSq/x SINE Alu 5 133 -179 585 301 31 25 chr11 37488924 37489120 -113294433 - MIR SINE MIR -56 206 10 186 309 36 12 chr11 37489643 37489727 -113293826 + L2 LINE L2 3165 3250 -22 354 261 108 23 chr11 37489935 37490065 -113293488 + L2 LINE L2 3168 3308 -5 1104 111 0 0 chr11 37490206 37490386 -113293167 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 205 333 124 19 chr11 37490402 37490507 -113293046 - L2 LINE L2 -21 3251 3136 443 262 166 38 chr11 37490749 37491039 -113292514 + MER102a DNA MER1_type 1 327 -3 538 180 27 0 chr11 37493545 37493656 -113289897 - MLT1F LTR MaLR 0 542 429 306 0 0 0 chr11 37493835 37493869 -113289684 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2638 21 7 0 chr11 37493869 37494157 -113289396 - L1PA2 LINE L1 -13 6142 5853 323 294 49 28 chr11 37494166 37494309 -113289244 + MIR SINE MIR 85 230 -32 1825 248 120 17 chr11 37494831 37495432 -113288121 - MLT2F LTR ERVL 0 663 1 2856 205 43 3 chr11 37495572 37496148 -113287405 + MER90 LTR ERV1 15 613 -1 226 73 49 0 chr11 37496148 37496189 -113287364 + (TA)n Simple_repeat Simple_repeat 1 43 0 274 213 0 0 chr11 37496194 37496241 -113287312 + Tigger5 DNA MER2_type 16 62 -2261 256 172 172 0 chr11 37496241 37496299 -113287254 + L1PB4 LINE L1 5970 6037 -119 656 128 0 0 chr11 37496299 37496385 -113287168 - AluS SINE Alu -226 87 2 429 223 154 8 chr11 37498415 37498545 -113285008 - MIR SINE MIR -32 230 82 360 331 69 23 chr11 37499179 37499309 -113284244 - MIR SINE MIR -112 150 15 219 286 16 16 chr11 37500088 37500151 -113283402 + MIR SINE MIR 4 66 -196 564 273 154 49 chr11 37500162 37500448 -113283105 + LTR33 LTR ERVL 24 339 -182 250 244 0 100 chr11 37500608 37500698 -113282855 + LTR33 LTR ERVL 441 521 0 486 293 66 6 chr11 37500701 37500868 -113282685 + MIR SINE MIR 76 252 -10 184 255 0 20 chr11 37501061 37501112 -113282441 + MER5A DNA MER1_type 136 185 -4 396 269 121 50 chr11 37501453 37501635 -113281918 - MIR SINE MIR -49 213 19 189 311 75 0 chr11 37501828 37501919 -113281634 - L3 LINE CR1 -353 1224 1123 476 224 21 94 chr11 37501919 37502111 -113281442 + MER5B DNA MER1_type 1 178 0 189 311 75 0 chr11 37502111 37502125 -113281428 - L3 LINE CR1 -454 1123 1111 24 0 0 0 chr11 37503169 37503193 -113280360 + AT_rich Low_complexity Low_complexity 1 24 0 466 303 113 23 chr11 37503293 37503514 -113280039 - MIR SINE MIR -10 252 12 303 291 117 105 chr11 37504858 37505191 -113278362 - L1M2 LINE L1 -5737 1112 776 355 299 91 26 chr11 37509782 37509936 -113273617 + MER102a DNA MER1_type 13 176 -154 956 296 21 4 chr11 37509962 37510205 -113273348 - MIR SINE MIR -12 250 4 333 317 41 8 chr11 37510212 37510335 -113273218 + MER102a DNA MER1_type 178 304 -26 269 261 120 0 chr11 37511182 37511274 -113272279 - MIR SINE MIR -54 208 106 1007 183 0 24 chr11 37511849 37512018 -113271535 + FAM SINE Alu 1 165 -10 1015 259 90 35 chr11 37512518 37512919 -113270634 - LTR16A LTR ERVL -7 443 21 1527 168 4 4 chr11 37513048 37513316 -113270237 + L1MA8 LINE L1 6011 6278 -13 2094 137 0 0 chr11 37513527 37513842 -113269711 - AluSx SINE Alu 0 315 1 2621 68 3 0 chr11 37514851 37515174 -113268379 - THE1A LTR MaLR -31 324 1 321 362 183 19 chr11 37515177 37515904 -113267649 - L2 LINE L2 -662 2652 1807 330 276 0 20 chr11 37516215 37516313 -113267240 - 7SK RNA RNA -97 96 1 580 303 105 69 chr11 37516398 37517233 -113266320 + L2 LINE L2 2065 3309 -4 248 273 0 0 chr11 37517244 37517299 -113266254 - L2 LINE L2 -206 3066 3012 448 164 45 82 chr11 37519856 37519966 -113263587 + MER45A DNA AcHobo 72 177 -1 751 290 31 8 chr11 37520121 37520376 -113263177 + MIR SINE MIR 2 262 0 3351 182 75 23 chr11 37520685 37521387 -113262166 - MER21B LTR ERV1 -124 739 1 213 39 0 0 chr11 37521433 37521459 -113262094 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 4866 137 65 38 chr11 37521833 37522709 -113260844 + MER4D LTR ERV1 1 900 -3 754 256 108 20 chr11 37523062 37523367 -113260186 - L1ME4a LINE L1 -219 5902 5571 2979 127 0 2 chr11 37524785 37525225 -113258328 - L1PA15 LINE L1 0 6165 5727 1943 162 27 3 chr11 37525538 37525872 -113257681 - MLT1A1 LTR MaLR 0 365 24 7152 19 0 0 chr11 37525872 37526696 -113256857 - L1PA2 LINE L1 -1087 5059 4236 8110 10 0 0 chr11 37526696 37527795 -113255758 + L1PA2 LINE L1 5058 6155 0 277 83 0 0 chr11 37527799 37527835 -113255718 - MLT1A1 LTR MaLR -338 36 1 184 277 157 0 chr11 37530141 37530224 -113253329 - L2 LINE L2 0 3272 3177 205 256 33 100 chr11 37530388 37530478 -113253075 + MIR SINE MIR 92 175 -87 313 28 0 0 chr11 37531321 37531357 -113252196 + tRNA-Arg-AGA tRNA tRNA 1 36 -40 376 254 113 35 chr11 37531828 37531970 -113251583 + MIR SINE MIR 23 175 -87 1188 232 0 0 chr11 37532003 37532223 -113251330 - MER58A DNA MER1_type -1 223 4 1053 192 21 56 chr11 37532241 37532351 -113251202 - MER33 DNA MER1_type -2269 316 204 2237 118 0 0 chr11 37532351 37532655 -113250898 + AluSq SINE Alu 3 306 -7 1053 192 21 56 chr11 37532655 37532831 -113250722 - MER33 DNA MER1_type -2381 204 40 437 253 37 100 chr11 37532848 37533117 -113250436 - MER112 DNA MER1_type -3 253 2 191 196 43 0 chr11 37533341 37533387 -113250166 - MIR SINE MIR -63 145 98 819 153 8 0 chr11 37533403 37533527 -113250026 + FLAM_C SINE Alu 1 125 -18 186 125 0 0 chr11 37533538 37533545 -113250008 + (GAA)n Simple_repeat Simple_repeat 2 8 -25 2141 134 3 6 chr11 37533545 37533858 -113249695 + AluSq SINE Alu 1 312 -1 186 125 0 0 chr11 37533858 37533882 -113249671 + (GAA)n Simple_repeat Simple_repeat 7 33 0 1357 193 45 0 chr11 37534226 37534515 -113249038 - L1PB4 LINE L1 -21 6145 5840 1965 134 4 4 chr11 37534624 37534899 -113248654 + AluJb SINE Alu 5 279 -33 180 0 0 0 chr11 37534901 37534921 -113248632 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 454 288 75 13 chr11 37535187 37535379 -113248174 + MIR SINE MIR 6 206 -56 865 150 24 0 chr11 37536250 37536377 -113247176 + FLAM_C SINE Alu 3 132 -11 370 287 72 24 chr11 37536465 37536632 -113246921 + MIR SINE MIR 85 259 -3 2404 53 3 0 chr11 37537113 37537429 -113246124 - AluY SINE Alu 0 317 1 525 173 55 9 chr11 37537880 37537990 -113245563 + MIR SINE MIR 76 190 -72 21 0 0 0 chr11 37539010 37539031 -113244522 + AT_rich Low_complexity Low_complexity 1 21 0 271 330 43 0 chr11 37539502 37539596 -113243957 - L2 LINE L2 -17 3255 3158 962 253 17 17 chr11 37539602 37539843 -113243710 - MIR SINE MIR 0 262 22 330 256 108 45 chr11 37540110 37540333 -113243220 - L1ME4a LINE L1 -234 5887 5651 2373 91 0 0 chr11 37540505 37540801 -113242752 - AluSx SINE Alu -16 296 1 463 289 84 5 chr11 37541125 37541315 -113242238 + MIR SINE MIR 1 205 -57 646 274 119 36 chr11 37541754 37542116 -113241437 - MLT1K LTR MaLR -43 545 154 182 36 0 36 chr11 37542322 37542350 -113241203 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 25 31 0 0 chr11 37542635 37542667 -113240886 + AT_rich Low_complexity Low_complexity 1 32 0 2236 104 3 3 chr11 37544070 37544368 -113239185 - AluSp SINE Alu -15 298 1 317 310 47 16 chr11 37545703 37545832 -113237721 + MIR SINE MIR 21 153 -109 654 264 6 16 chr11 37546057 37546239 -113237314 + MIR SINE MIR 58 237 -25 1625 193 51 28 chr11 37546774 37547163 -113236390 - L1MD3 LINE L1 -9 7986 7589 769 283 31 0 chr11 37547303 37547526 -113236027 + MIR SINE MIR 16 245 -17 28 48 0 0 chr11 37548136 37548178 -113235375 + AT_rich Low_complexity Low_complexity 1 42 0 434 228 106 63 chr11 37548209 37548398 -113235155 + MER6B DNA MER2_type 1 197 -13 1272 92 10 46 chr11 37548641 37548837 -113234716 - MER30B DNA MER1_type 0 190 2 730 286 33 0 chr11 37549184 37549394 -113234159 - MIR SINE MIR -34 228 12 233 303 0 0 chr11 37549396 37549462 -113234091 + MIR SINE MIR 176 241 -21 712 287 29 5 chr11 37550283 37550492 -113233061 + MIR SINE MIR 13 226 -36 180 258 75 0 chr11 37551511 37551604 -113231949 - MER5A DNA MER1_type -81 108 9 270 288 79 29 chr11 37553083 37553222 -113230331 + MIR SINE MIR 117 262 0 224 281 101 0 chr11 37554734 37554823 -113228730 + MIR SINE MIR 80 177 -85 580 221 27 27 chr11 37554889 37555038 -113228515 - MIR SINE MIR -91 171 23 1501 269 42 8 chr11 37555137 37555609 -113227944 - MER113 DNA MER1_type? -33 488 1 554 287 78 41 chr11 37556319 37556587 -113226966 - MLT1I LTR MaLR 0 409 132 1502 270 62 19 chr11 37556588 37557054 -113226499 - LTR16C LTR ERVL 0 491 6 242 187 67 40 chr11 37557059 37557134 -113226419 - MLT1I LTR MaLR -274 135 59 1117 189 14 27 chr11 37557253 37557475 -113226078 - MER20 DNA MER1_type 0 219 1 243 274 32 0 chr11 37557820 37557882 -113225671 - LTR16C LTR ERVL 0 491 428 257 204 0 0 chr11 37558223 37558277 -113225276 + MIR SINE MIR 99 152 -110 362 246 90 15 chr11 37558372 37558506 -113225047 + MIR SINE MIR 107 250 -12 449 304 149 0 chr11 37558540 37558734 -113224819 - MIR SINE MIR 0 262 40 270 344 86 0 chr11 37559553 37559681 -113223872 + MIR SINE MIR 47 185 -77 644 270 107 0 chr11 37560213 37560428 -113223125 + MIR SINE MIR 24 261 -1 568 306 19 24 chr11 37560679 37560885 -113222668 - MIR SINE MIR -26 236 32 1781 164 7 17 chr11 37561322 37561620 -113221933 - AluJb SINE Alu -17 295 1 542 192 108 8 chr11 37561984 37562114 -113221439 + MER103 DNA DNA 16 158 -8 2101 152 0 0 chr11 37562139 37562449 -113221104 + AluSx SINE Alu 1 310 -2 361 254 65 22 chr11 37564956 37565094 -113218459 - L1ME4a LINE L1 -6 6115 5972 2003 149 0 0 chr11 37565167 37565456 -113218097 - AluSc SINE Alu -20 289 1 226 332 45 14 chr11 37565657 37565877 -113217676 - L1ME4a LINE L1 -303 5818 5592 2019 124 0 54 chr11 37566047 37566361 -113217192 - AluSg SINE Alu -13 297 1 220 244 56 78 chr11 37567306 37567396 -113216157 - MIR SINE MIR -86 176 89 2337 111 0 13 chr11 37567412 37567718 -113215835 - AluSx SINE Alu -10 302 1 236 284 14 0 chr11 37568336 37568410 -113215143 - HsTC2 DNA Tc2 -1819 79 5 367 124 168 7 chr11 37568635 37568761 -113214792 - MER20 DNA MER1_type -1 218 1 1373 198 6 55 chr11 37568823 37569151 -113214402 - AluJo SINE Alu 0 312 1 327 250 24 0 chr11 37569911 37569995 -113213558 - L2 LINE L2 -216 3056 2971 276 197 13 26 chr11 37570225 37570301 -113213252 - HsTC2 DNA Tc2 -1820 78 4 438 272 67 33 chr11 37571207 37571387 -113212166 - L1ME4a LINE L1 -1 6120 5935 2183 139 0 0 chr11 37571387 37571697 -113211856 + AluSg SINE Alu 1 310 0 438 272 67 33 chr11 37571697 37571824 -113211729 - L1ME4a LINE L1 -186 5935 5814 278 371 8 30 chr11 37572037 37572169 -113211384 + MIR SINE MIR 17 145 -63 236 260 0 0 chr11 37572203 37572253 -113211300 + MIR SINE MIR 213 262 0 489 264 75 33 chr11 37572763 37572975 -113210578 + MIR SINE MIR 33 253 -9 478 290 0 14 chr11 37573251 37573389 -113210164 - MIR3 SINE MIR -48 160 25 2242 106 3 3 chr11 37574407 37574710 -113208843 - AluSx SINE Alu -9 303 1 768 164 0 23 chr11 37575449 37575577 -113207976 + FLAM_C SINE Alu 2 126 -17 581 248 29 78 chr11 37575704 37575910 -113207643 - MER117 DNA MER1_type 0 197 2 1187 59 13 0 chr11 37577108 37577261 -113206292 + L1PA7 LINE L1 6000 6154 0 541 271 0 53 chr11 37577269 37577468 -113206085 + MIR SINE MIR 46 230 -32 779 250 259 6 chr11 37578875 37579211 -113204342 + L2 LINE L2 2893 3313 0 312 167 0 0 chr11 37579462 37579534 -113204019 + (TG)n Simple_repeat Simple_repeat 1 72 0 3396 120 12 6 chr11 37579628 37580137 -113203416 - MER41E LTR ERV1 0 512 1 1022 155 0 23 chr11 37580507 37580681 -113202872 - AluJb SINE Alu -6 306 137 200 57 0 29 chr11 37580772 37580807 -113202746 + (CAA)n Simple_repeat Simple_repeat 2 35 0 633 248 122 62 chr11 37581255 37581739 -113201814 - L1MC4a LINE L1 -1859 5949 5437 29 0 0 0 chr11 37581818 37581847 -113201706 + AT_rich Low_complexity Low_complexity 1 29 0 271 340 0 10 chr11 37582701 37582804 -113200749 - MIR SINE MIR -116 146 45 201 121 0 0 chr11 37583801 37583834 -113199719 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 249 185 93 0 chr11 37584594 37584648 -113198905 + MIR SINE MIR 43 101 -107 1004 293 109 18 chr11 37584684 37585070 -113198483 - MLT1K LTR MaLR -10 578 158 1042 184 104 0 chr11 37585220 37585421 -113198132 - MER58A DNA MER1_type -2 222 1 197 271 0 0 chr11 37585474 37585522 -113198031 + MIR SINE MIR 215 262 0 213 240 0 0 chr11 37585542 37585592 -113197961 + (TAA)n Simple_repeat Simple_repeat 3 52 0 292 248 53 9 chr11 37585689 37585802 -113197751 - MIR3 SINE MIR -23 185 68 437 145 0 14 chr11 37586616 37586685 -113196868 - MER58 DNA MER1_type 0 2420 2353 251 218 195 23 chr11 37586836 37586923 -113196630 + MIR SINE MIR 63 164 -98 2904 78 8 0 chr11 37587166 37587552 -113196001 - L1PA10 LINE L1 -4 6164 5776 39 22 0 0 chr11 37587619 37587665 -113195888 + AT_rich Low_complexity Low_complexity 1 46 0 880 127 16 0 chr11 37587686 37587812 -113195741 - AluJb SINE Alu -175 137 10 257 212 204 9 chr11 37588483 37588596 -113194957 + MIR SINE MIR 34 168 -94 540 0 0 0 chr11 37588627 37588687 -113194866 + (CAAAA)n Simple_repeat Simple_repeat 1 60 0 488 274 16 89 chr11 37589232 37589422 -113194131 - Charlie8 DNA MER1_type -2057 360 185 1962 135 3 57 chr11 37589531 37589849 -113193704 + AluSx SINE Alu 9 309 -3 2085 124 0 13 chr11 37590069 37590367 -113193186 - AluSx SINE Alu -14 298 5 198 274 0 0 chr11 37590950 37591001 -113192552 - L2 LINE L2 -4 3268 3218 2085 207 30 45 chr11 37592522 37593030 -113190523 - MLT1D LTR MaLR -4 501 2 601 287 37 28 chr11 37593403 37593619 -113189934 + MIR SINE MIR 8 225 -37 460 306 18 18 chr11 37593629 37593799 -113189754 + L3 LINE CR1 1293 1462 -115 256 367 8 8 chr11 37593811 37593931 -113189622 + MER5A DNA MER1_type 18 137 -52 3808 118 68 5 chr11 37593964 37594582 -113188971 - L1MC1 LINE L1 -15 6318 5662 667 310 9 0 chr11 37594919 37595132 -113188421 + MIR SINE MIR 42 256 -6 257 306 12 0 chr11 37595666 37595751 -113187802 + MIR SINE MIR 65 150 -112 333 314 8 0 chr11 37596237 37596355 -113187198 - L1ME3A LINE L1 0 6170 6052 2369 108 0 3 chr11 37597516 37597821 -113185732 - AluSq SINE Alu -9 304 1 426 323 80 51 chr11 37597994 37598307 -113185246 - L2 LINE L2 0 3272 2951 226 299 126 0 chr11 37599946 37600033 -113183520 - MIR3 SINE MIR 0 208 111 232 259 0 0 chr11 37600178 37600236 -113183317 - MIR SINE MIR -121 87 30 543 328 74 14 chr11 37602080 37602196 -113181357 + L2 LINE L2 2997 3105 -208 2746 88 11 16 chr11 37602196 37602573 -113180980 + THE1C LTR MaLR 1 375 0 543 328 74 14 chr11 37602573 37602752 -113180801 + L2 LINE L2 3105 3310 -3 183 363 88 0 chr11 37602870 37602961 -113180592 - L2 LINE L2 -40 3232 3134 200 265 0 0 chr11 37603201 37603250 -113180303 + MIR SINE MIR 210 258 -4 212 179 0 0 chr11 37603370 37603409 -113180144 + (TTATA)n Simple_repeat Simple_repeat 1 39 0 255 286 13 13 chr11 37604656 37604733 -113178820 - MIR SINE MIR -175 87 11 22 0 0 0 chr11 37605265 37605287 -113178266 + AT_rich Low_complexity Low_complexity 1 22 0 199 244 154 26 chr11 37605456 37605534 -113178019 + MIR SINE MIR 20 107 -155 261 298 48 0 chr11 37606254 37606338 -113177215 - MER5A DNA MER1_type -99 90 3 2274 122 0 3 chr11 37607521 37607833 -113175720 - AluSq SINE Alu -2 311 1 230 81 27 0 chr11 37608537 37608574 -113174979 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 2301 105 0 0 chr11 37608618 37608912 -113174641 - AluSg SINE Alu -16 294 1 1300 197 157 10 chr11 37610469 37610769 -113172784 - MER2 DNA MER2_type 0 345 2 417 39 0 0 chr11 37611519 37611570 -113171983 + (TC)n Simple_repeat Simple_repeat 1 51 0 211 292 125 17 chr11 37611679 37611799 -113171754 + MER5B DNA MER1_type 1 133 -45 2209 118 20 0 chr11 37611982 37612288 -113171265 + AluSx SINE Alu 1 312 0 244 268 32 76 chr11 37612399 37612556 -113170997 - L1MC/D LINE L1 -2132 5676 5527 1048 220 79 26 chr11 37614673 37615019 -113168534 + MSTD LTR MaLR 1 396 0 229 340 77 0 chr11 37615738 37615894 -113167659 + MIR3 SINE MIR 34 201 -7 1688 163 179 8 chr11 37616572 37616964 -113166589 + L1MA4A LINE L1 5822 6280 -23 550 273 59 11 chr11 37617946 37618133 -113165420 + MIR SINE MIR 28 223 -39 726 168 37 47 chr11 37618513 37618704 -113164849 - MER53 DNA DNA 0 189 1 23 0 0 0 chr11 37621082 37621105 -113162448 + AT_rich Low_complexity Low_complexity 1 23 0 384 286 11 0 chr11 37622093 37622184 -113161369 + MER58 DNA MER1_type 1 92 -2328 861 174 64 6 chr11 37622190 37622362 -113161191 - MLT1A1 LTR MaLR 0 365 184 23 33 0 0 chr11 37622371 37622401 -113161152 + AT_rich Low_complexity Low_complexity 1 30 0 1884 145 0 30 chr11 37622410 37622707 -113160846 - AluJb SINE Alu -23 289 2 1661 213 30 11 chr11 37622750 37623104 -113160449 - MLT1A1 LTR MaLR -1 364 3 493 65 0 0 chr11 37623104 37623165 -113160388 + MADE1 DNA Mariner 20 80 0 183 269 0 19 chr11 37623165 37623217 -113160336 - MIR SINE MIR -156 106 56 240 35 0 0 chr11 37624041 37624070 -113159483 + (TA)n Simple_repeat Simple_repeat 1 29 0 189 0 0 0 chr11 37624087 37624108 -113159445 + (GA)n Simple_repeat Simple_repeat 2 22 0 2063 102 4 4 chr11 37624114 37624380 -113159173 - AluSg SINE Alu -40 270 5 30 27 0 0 chr11 37625083 37625120 -113158433 + AT_rich Low_complexity Low_complexity 1 37 0 484 301 45 17 chr11 37625210 37625386 -113158167 - MIR SINE MIR -3 259 79 422 271 53 0 chr11 37625428 37625561 -113157992 + MIR SINE MIR 48 187 -75 291 222 16 0 chr11 37625566 37625629 -113157924 - MIR SINE MIR -5 257 194 375 148 0 0 chr11 37625925 37625986 -113157567 - MER31A LTR ERV1 0 485 425 1869 154 31 0 chr11 37627511 37627804 -113155749 - AluJb SINE Alu 0 312 11 931 190 34 11 chr11 37627841 37628020 -113155533 - L1PA16 LINE L1 -9 6157 5975 6904 82 6 16 chr11 37628109 37629190 -113154363 - L1PA10 LINE L1 -1 6167 5095 598 308 94 20 chr11 37629217 37629689 -113153864 + L2 LINE L2 2595 3165 -107 438 75 0 170 chr11 37630505 37630599 -113152954 - MADE1 DNA Mariner 0 80 3 242 345 55 9 chr11 37630612 37630722 -113152831 + MIR SINE MIR 29 143 -119 514 296 74 37 chr11 37631128 37631317 -113152236 + MER91A DNA MER1_type 1 196 0 217 197 42 56 chr11 37631317 37631351 -113152202 + L2 LINE L2 3232 3264 -8 4829 153 46 10 chr11 37631741 37632632 -113150921 - Tigger3b DNA MER2_type -1 1230 308 1358 167 0 9 chr11 37632650 37632866 -113150687 - AluJb SINE Alu -15 297 84 1088 171 271 4 chr11 37632867 37633118 -113150435 - Tigger3b DNA MER2_type -913 318 1 11613 70 7 11 chr11 37633288 37634863 -113148690 + L1P LINE L1 3110 4677 -1469 264 312 55 9 chr11 37635481 37635590 -113147963 + MLT1K LTR MaLR 11 124 -464 459 236 188 18 chr11 37635722 37635951 -113147602 + MLT1K LTR MaLR 321 588 0 22 0 0 0 chr11 37636245 37636267 -113147286 + AT_rich Low_complexity Low_complexity 1 22 0 2461 153 33 19 chr11 37636684 37637103 -113146450 + MSTB1 LTR MaLR 8 432 0 276 345 146 12 chr11 37637121 37637292 -113146261 + MIR SINE MIR 48 241 -21 4610 125 3 1 chr11 37637695 37638406 -113145147 - L1P LINE L1 -1134 5012 4301 231 191 0 0 chr11 37639590 37639632 -113143921 - MIR SINE MIR 0 262 221 651 268 78 15 chr11 37639634 37639839 -113143714 - MIR SINE MIR -5 257 40 476 252 80 61 chr11 37640530 37640793 -113142760 + L1MC4a LINE L1 6681 6842 -966 281 321 152 0 chr11 37641898 37642010 -113141543 + L2 LINE L2 3182 3310 -3 286 292 140 43 chr11 37642382 37642639 -113140914 + MLT1I LTR MaLR 14 295 -114 199 260 91 0 chr11 37643171 37643248 -113140305 + L2 LINE L2 1339 1422 -1892 592 271 116 5 chr11 37643271 37643470 -113140083 + MIR SINE MIR 14 234 -28 1556 189 0 53 chr11 37643716 37644039 -113139514 - AluJo SINE Alu -6 306 1 308 83 67 17 chr11 37644191 37644251 -113139302 - Alu SINE Alu 0 302 240 981 96 15 0 chr11 37644254 37644390 -113139163 - AluJb SINE Alu -174 138 1 221 288 273 27 chr11 37644401 37644881 -113138672 + L2 LINE L2 1875 2472 -842 2532 118 31 6 chr11 37645459 37645814 -113137739 - THE1B LTR MaLR 0 364 1 734 241 0 0 chr11 37646024 37646157 -113137396 + FLAM_A SINE Alu 1 133 0 796 282 46 8 chr11 37646244 37646485 -113137068 - MIR SINE MIR -12 250 1 255 231 77 22 chr11 37647994 37648085 -113135468 - L1ME4a LINE L1 -13 6108 6013 410 178 11 22 chr11 37648435 37648525 -113135028 + MIR SINE MIR 56 144 -118 287 31 0 0 chr11 37648525 37648557 -113134996 + MSTA LTR MaLR 1 32 -396 485 299 74 56 chr11 37648948 37649396 -113134157 + L2 LINE L2 2817 3272 0 2362 53 0 0 chr11 37649846 37650151 -113133402 - AluY SINE Alu 0 305 1 386 253 44 32 chr11 37650265 37650423 -113133130 + Charlie7 DNA MER1_type 6 165 -2447 207 339 0 0 chr11 37650496 37650552 -113133001 - MER91 DNA MER1_type -3 137 82 3987 159 55 62 chr11 37651683 37652402 -113131151 + L1MB4 LINE L1 5040 5753 -427 1866 146 3 7 chr11 37652402 37652689 -113130864 + AluSx SINE Alu 1 286 -26 3987 159 55 62 chr11 37652689 37653085 -113130468 + L1MB4 LINE L1 5753 6150 -30 387 306 110 32 chr11 37653795 37654014 -113129539 + MIR SINE MIR 8 243 -19 521 289 68 50 chr11 37654285 37654607 -113128946 + L2 LINE L2 2982 3309 -4 2116 218 21 7 chr11 37655339 37655762 -113127791 + MLT1D LTR MaLR 77 505 0 426 317 12 25 chr11 37655871 37656032 -113127521 - L2 LINE L2 0 3313 3155 4153 106 87 27 chr11 37656165 37656642 -113126911 - Tigger3(Golem) DNA MER2_type 0 3029 2495 2128 146 0 7 chr11 37656642 37656951 -113126602 - AluJb SINE Alu -5 307 1 4153 106 87 27 chr11 37656951 37657172 -113126381 - Tigger3(Golem) DNA MER2_type -534 2495 2289 15919 179 27 25 chr11 37657174 37657753 -113125800 - L1MA4 LINE L1 -366 6116 5539 198 0 0 0 chr11 37657763 37657785 -113125768 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 3136 88 7 7 chr11 37657785 37658185 -113125368 - L1PA10 LINE L1 -17 6151 5749 15919 179 27 25 chr11 37658185 37662558 -113120995 - L1MA4 LINE L1 -943 5539 1166 2329 94 10 3 chr11 37662558 37662865 -113120688 - AluSp SINE Alu -4 309 1 15919 179 27 25 chr11 37662865 37664033 -113119520 - L1MA4 LINE L1 -5316 1166 1 3063 119 8 30 chr11 37664046 37664515 -113119038 - L1PA15 LINE L1 0 6165 5707 434 218 0 0 chr11 37664516 37664594 -113118959 - Tigger3(Golem) DNA MER2_type -2950 79 2 33 0 0 0 chr11 37665116 37665149 -113118404 + AT_rich Low_complexity Low_complexity 1 33 0 2195 130 14 23 chr11 37665648 37666002 -113117551 - L1MC1 LINE L1 -9 6324 5974 316 252 102 65 chr11 37666031 37666325 -113117228 - L1ME4a LINE L1 -29 6092 5788 498 266 121 0 chr11 37667807 37667980 -113115573 - MIR SINE MIR -49 213 20 604 259 98 36 chr11 37668042 37668233 -113115320 + MIR SINE MIR 8 216 -46 1842 177 7 0 chr11 37668233 37668532 -113115021 + AluJo SINE Alu 5 305 -7 604 259 98 36 chr11 37668532 37668564 -113114989 + MIR SINE MIR 216 245 -17 945 254 58 4 chr11 37668725 37668965 -113114588 - MIR SINE MIR -2 260 8 637 259 118 48 chr11 37669008 37669236 -113114317 - MIR SINE MIR 0 262 19 321 275 45 19 chr11 37669248 37669360 -113114193 + MER5B DNA MER1_type 21 120 -58 233 333 9 18 chr11 37669261 37669375 -113114178 - MER5A DNA MER1_type -22 167 55 * 1657 170 3 60 chr11 37670223 37670541 -113113012 + AluJo SINE Alu 1 300 -12 484 274 41 41 chr11 37671578 37671775 -113111778 - MIR SINE MIR -34 228 32 342 247 0 22 chr11 37673058 37673147 -113110406 + MER103 DNA DNA 2 88 -78 323 344 38 0 chr11 37673269 37673394 -113110159 + L2 LINE L2 3184 3313 0 515 281 92 23 chr11 37675394 37675611 -113107942 + MIR SINE MIR 18 249 -13 351 291 68 73 chr11 37677298 37677371 -113106182 + MIR SINE MIR 20 92 -170 3239 145 35 25 chr11 37677371 37677424 -113106129 - L1MB3 LINE L1 -1 6182 6131 249 57 0 0 chr11 37677424 37677459 -113106094 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2359 72 0 0 chr11 37677459 37677737 -113105816 - AluY SINE Alu -30 281 4 3239 145 35 25 chr11 37677737 37678282 -113105271 - L1MB3 LINE L1 -51 6132 5577 351 291 68 73 chr11 37678282 37678442 -113105111 + MIR SINE MIR 92 252 -10 228 303 0 22 chr11 37678452 37678541 -113105012 + MIR3 SINE MIR 121 207 -1 224 98 0 24 chr11 37680593 37680634 -113102919 + (TTTC)n Simple_repeat Simple_repeat 3 42 0 703 246 113 5 chr11 37682025 37682228 -113101325 - MIR SINE MIR -33 229 5 918 117 11 15 chr11 37682272 37682422 -113101131 + THE1C LTR MaLR 1 121 -254 798 265 55 8 chr11 37682683 37682921 -113100632 + MIR SINE MIR 13 261 -1 439 123 15 0 chr11 37683435 37683500 -113100053 - THE1C LTR MaLR -254 121 56 2049 169 50 92 chr11 37683630 37684216 -113099337 + MER34B LTR ERV1 5 565 0 497 271 136 5 chr11 37684986 37685200 -113098353 + MIR SINE MIR 18 259 -3 316 213 82 41 chr11 37686295 37686417 -113097136 + MIR SINE MIR 75 201 -61 1130 186 151 14 chr11 37686673 37686958 -113096595 + MLT1F LTR MaLR 180 501 -41 1647 190 30 51 chr11 37686958 37687180 -113096373 - MLT1A1 LTR MaLR 0 365 153 1905 184 46 3 chr11 37687180 37687528 -113096025 + MLT1A1 LTR MaLR 3 365 0 1647 190 30 51 chr11 37687528 37687678 -113095875 - MLT1A1 LTR MaLR -212 153 1 577 260 26 0 chr11 37687868 37688022 -113095531 - MLT1L LTR MaLR -5 610 453 25 0 0 0 chr11 37688353 37688378 -113095175 + AT_rich Low_complexity Low_complexity 1 25 0 872 284 125 37 chr11 37688454 37688862 -113094691 - L2 LINE L2 -4 3309 2866 2874 320 53 38 chr11 37689182 37691088 -113092465 + HERVL LTR ERVL 2253 4201 -1284 234 284 0 15 chr11 37691137 37691204 -113092349 - MER5A DNA MER1_type -83 106 41 320 282 29 23 chr11 37692401 37692575 -113090978 + CT-rich Low_complexity Low_complexity 1 175 0 2258 125 0 0 chr11 37693080 37693392 -113090161 - AluSx SINE Alu 0 312 1 346 239 64 18 chr11 37693569 37693678 -113089875 + MIR3 SINE MIR 61 174 -34 427 284 77 64 chr11 37694921 37695248 -113088305 - L2 LINE L2 -106 3166 2836 723 300 65 14 chr11 37695301 37695578 -113087975 + MLT1F1 LTR MaLR 2 292 -250 2156 190 35 76 chr11 37695593 37696173 -113087380 - MER34B LTR ERV1 -5 560 5 1113 154 65 19 chr11 37696177 37696391 -113087162 + MLT1F1 LTR MaLR 343 566 -1 376 184 0 69 chr11 37696412 37696499 -113087054 + MIR3 SINE MIR 76 156 -52 432 221 107 27 chr11 37696631 37696780 -113086773 - MIR SINE MIR 0 262 102 266 292 29 36 chr11 37697807 37697944 -113085609 + MIR SINE MIR 96 231 -31 593 264 99 33 chr11 37697999 37698211 -113085342 + MIR SINE MIR 37 262 0 28 0 0 0 chr11 37698695 37698723 -113084830 + AT_rich Low_complexity Low_complexity 1 28 0 4961 89 12 6 chr11 37698733 37699396 -113084157 - PABL_B LTR ERV1 0 667 1 593 185 37 0 chr11 37699418 37699526 -113084027 - MER44D DNA MER2_type 0 605 494 195 204 0 0 chr11 37699527 37699571 -113083982 + (CATA)n Simple_repeat Simple_repeat 2 45 0 1121 94 133 109 chr11 37699571 37699806 -113083747 - MER44D DNA MER2_type -1957 534 306 2249 106 38 46 chr11 37699806 37700173 -113083380 + THE1B LTR MaLR 1 364 0 1121 94 133 109 chr11 37700173 37700193 -113083360 - MER44D DNA MER2_type -2185 306 3 2325 105 0 3 chr11 37700303 37700609 -113082944 - AluSg SINE Alu -5 305 1 25 0 0 0 chr11 37701552 37701577 -113081976 + AT_rich Low_complexity Low_complexity 1 25 0 621 240 29 6 chr11 37702529 37702700 -113080853 + MER5B DNA MER1_type 4 178 0 258 32 0 0 chr11 37703252 37703283 -113080270 + (TTG)n Simple_repeat Simple_repeat 2 32 0 6520 88 6 16 chr11 37703380 37704452 -113079101 - L1PA10 LINE L1 -5 6163 5095 520 281 65 19 chr11 37704479 37704863 -113078690 + L2 LINE L2 2595 3059 -213 412 75 0 170 chr11 37705767 37705861 -113077692 - MADE1 DNA Mariner 0 80 3 210 345 55 9 chr11 37705874 37705984 -113077569 + MIR SINE MIR 29 143 -119 457 299 72 12 chr11 37706390 37706557 -113076996 + MER91A DNA MER1_type 1 177 -19 194 167 62 0 chr11 37706565 37706613 -113076940 + L2 LINE L2 3214 3264 -8 454 301 27 7 chr11 37706700 37706846 -113076707 + MIR SINE MIR 2 150 -112 403 209 29 19 chr11 37707027 37707132 -113076421 - MIR SINE MIR -12 250 145 2806 123 16 23 chr11 37708572 37708960 -113074593 + MSTA LTR MaLR 2 388 -40 2899 16 0 0 chr11 37708960 37709273 -113074280 - AluYb8 SINE Alu -5 313 1 2806 123 16 23 chr11 37709273 37709314 -113074239 + MSTA LTR MaLR 388 428 0 243 0 0 0 chr11 37709912 37709939 -113073614 + (TC)n Simple_repeat Simple_repeat 1 27 0 719 253 176 41 chr11 37710589 37710953 -113072600 + MLT1J2 LTR MaLR 34 450 0 988 258 83 67 chr11 37711114 37711634 -113071919 + L1MC4a LINE L1 5297 5555 -745 2382 94 0 0 chr11 37712163 37712470 -113071083 + AluSg SINE Alu 1 307 -3 978 293 68 4 chr11 37712627 37713238 -113070315 - MER115 DNA AcHobo -5 688 1 356 274 0 11 chr11 37715088 37715183 -113068370 - L2 LINE L2 -4 3309 3216 1270 109 0 0 chr11 37715186 37715351 -113068202 + AluSq SINE Alu 9 173 -140 1474 263 150 44 chr11 37715351 37716294 -113067259 - L2 LINE L2 -105 3208 2163 515 203 31 47 chr11 37716295 37716423 -113067130 + MER106B DNA MER1_type 934 1059 0 700 288 9 35 chr11 37716576 37716802 -113066751 - MIR SINE MIR -15 247 28 232 214 18 0 chr11 37716859 37716915 -113066638 + (TA)n Simple_repeat Simple_repeat 1 57 0 333 0 0 0 chr11 37716917 37716954 -113066599 + (CA)n Simple_repeat Simple_repeat 2 38 0 325 290 67 36 chr11 37718811 37719004 -113064549 + MIR SINE MIR 8 206 -56 30 59 0 0 chr11 37719437 37719488 -113064065 + AT_rich Low_complexity Low_complexity 1 51 0 2195 126 0 3 chr11 37720486 37720795 -113062758 + AluJb SINE Alu 1 308 -4 404 238 0 0 chr11 37721208 37721288 -113062265 + L1M1 LINE L1 418 497 -7068 378 277 15 22 chr11 37721343 37721480 -113062073 + L2 LINE L2 3176 3311 -2 345 346 26 26 chr11 37721596 37721752 -113061801 + L2 LINE L2 3115 3270 -2 1479 165 29 25 chr11 37722215 37722494 -113061059 + MER7A DNA MER2_type 1 278 -68 312 336 36 7 chr11 37722598 37722735 -113060818 - MER5A DNA MER1_type -5 184 44 235 194 45 60 chr11 37722745 37722812 -113060741 - MER34 LTR ERV1 -4 538 473 8993 162 25 55 chr11 37722815 37724916 -113058637 + L1MA3 LINE L1 16 2759 -4806 1340 124 29 37 chr11 37724910 37725152 -113058401 + L1MA3 LINE L1 5623 5862 -443 * 1429 122 9 31 chr11 37725153 37725375 -113058178 - THE1B LTR MaLR -1 363 147 1515 145 28 4 chr11 37725375 37725623 -113057930 + L1MA3 LINE L1 2753 3006 -4559 * 6015 139 14 17 chr11 37725619 37726320 -113057233 + L1MA3 LINE L1 6584 7282 -442 2279 129 19 25 chr11 37726320 37726685 -113056868 - THE1B LTR MaLR -1 363 1 6015 139 14 17 chr11 37726685 37727094 -113056459 + L1MA3 LINE L1 7282 7691 -33 690 179 0 0 chr11 37727564 37727687 -113055866 - MER97a DNA MER1_type? -721 173 51 428 221 33 41 chr11 37727751 37727873 -113055680 + L2 LINE L2 3151 3271 -1 645 224 86 0 chr11 37728136 37728310 -113055243 + MER33 DNA MER1_type 30 218 -106 2048 180 9 35 chr11 37728660 37729093 -113054460 - L1MC3 LINE L1 -1 7784 7363 502 103 10 72 chr11 37729094 37729191 -113054362 + MLT1A1 LTR MaLR 2 92 -273 3924 125 35 22 chr11 37729198 37729822 -113053731 - MER39B LTR ERV1 -21 632 1 1312 201 19 22 chr11 37729822 37730089 -113053464 + MLT1A1 LTR MaLR 92 357 -8 1338 164 33 21 chr11 37730304 37730578 -113052975 - L1MC3 LINE L1 -415 7580 7129 184 349 47 12 chr11 37730761 37730847 -113052706 + MIR3 SINE MIR 10 98 -110 322 230 44 62 chr11 37730877 37730990 -113052563 + MIR SINE MIR 33 143 -65 1520 154 47 50 chr11 37731513 37731811 -113051742 - MLT1B LTR MaLR -91 299 3 4333 154 34 73 chr11 37731817 37731883 -113051670 + Charlie1 DNA MER1_type 1812 1879 -882 2153 131 0 3 chr11 37731883 37732174 -113051379 + AluSx SINE Alu 1 290 -22 4333 154 34 73 chr11 37732174 37732620 -113050933 + Charlie1 DNA MER1_type 1879 2341 -420 1686 174 7 14 chr11 37732620 37732901 -113050652 + AluJb SINE Alu 7 285 -27 4333 154 34 73 chr11 37732901 37733340 -113050213 + Charlie1 DNA MER1_type 2341 2727 -34 1629 186 10 7 chr11 37733340 37733646 -113049907 + AluJb SINE Alu 1 307 -5 4333 154 34 73 chr11 37733646 37733680 -113049873 + Charlie1 DNA MER1_type 2727 2761 0 236 305 47 47 chr11 37733680 37733808 -113049745 - L2 LINE L2 -4 3309 3182 7837 22 1 0 chr11 37733813 37734936 -113048617 + L1PA3 LINE L1 5047 6170 0 1330 261 70 60 chr11 37735814 37735976 -113047577 + MLT1E LTR MaLR 1 160 -433 1590 213 63 17 chr11 37735976 37736323 -113047230 + MLT1A1 LTR MaLR 3 365 0 1330 261 70 60 chr11 37736323 37736747 -113046806 + MLT1E LTR MaLR 160 593 0 474 329 60 3 chr11 37737414 37737837 -113045716 - LTR16B LTR ERVL -2 462 1 2068 107 25 4 chr11 37738091 37738371 -113045182 - AluSg SINE Alu -24 286 1 305 306 35 0 chr11 37739077 37739162 -113044391 + MIR SINE MIR 30 117 -91 738 275 130 43 chr11 37739235 37739697 -113043856 - MLT1J LTR MaLR -2 509 8 418 170 10 60 chr11 37741672 37741772 -113041781 + MER5B DNA MER1_type 1 95 -83 2368 148 89 9 chr11 37742953 37743391 -113040162 - L1MC1 LINE L1 -16 6317 5845 1943 168 0 3 chr11 37743541 37743850 -113039703 + AluJb SINE Alu 1 308 -4 1678 151 56 122 chr11 37743955 37744398 -113039155 + MLT2D LTR ERVL 1 414 0 468 0 0 0 chr11 37746702 37746754 -113036799 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 385 271 154 19 chr11 37746868 37747082 -113036471 - MIR SINE MIR -18 244 2 185 108 27 0 chr11 37747251 37747288 -113036265 + (AACTG)n Simple_repeat Simple_repeat 4 41 0 2256 110 0 22 chr11 37748146 37748463 -113035090 + AluSg SINE Alu 1 310 0 624 85 25 0 chr11 37748463 37748581 -113034972 + (TA)n Simple_repeat Simple_repeat 1 121 0 543 258 60 87 chr11 37748646 37748980 -113034573 + MLT1H LTR MaLR 140 464 -85 2022 178 61 57 chr11 37749182 37749655 -113033898 - MLT1D LTR MaLR -1 504 30 1863 162 7 7 chr11 37749864 37750160 -113033393 - AluJb SINE Alu -14 298 3 7219 195 7 8 chr11 37750768 37752222 -113031331 - L1P5 LINE L1 -1244 4902 3451 3849 117 32 17 chr11 37752221 37752832 -113030721 + L1P5 LINE L1 4912 5512 -639 * 1465 134 0 0 chr11 37752832 37753041 -113030512 - AluSq SINE Alu -5 308 100 3849 117 32 17 chr11 37753041 37753293 -113030260 + L1P5 LINE L1 5512 5796 -355 294 73 0 0 chr11 37753293 37753334 -113030219 + (TG)n Simple_repeat Simple_repeat 2 42 0 3849 117 32 17 chr11 37753334 37753357 -113030196 + L1P5 LINE L1 5796 5817 -334 779 271 78 37 chr11 37753690 37754174 -113029379 + L2 LINE L2 2804 3307 -6 533 162 86 19 chr11 37754209 37754314 -113029239 + MER81 DNA DNA 3 114 0 236 246 0 0 chr11 37754412 37754469 -113029084 + L2 LINE L2 3257 3313 0 452 268 0 57 chr11 37755080 37755161 -113028392 + MIR3 SINE MIR 5 74 -134 1342 209 84 16 chr11 37755161 37755482 -113028071 - MER2 DNA MER2_type 0 344 2 452 268 0 57 chr11 37755482 37755557 -113027996 + MIR3 SINE MIR 74 152 -56 1982 150 0 3 chr11 37756389 37756683 -113026870 + AluJb SINE Alu 1 293 -19 418 231 94 147 chr11 37756920 37757240 -113026313 - MLT1J LTR MaLR -4 507 205 364 300 127 17 chr11 37757363 37757600 -113025953 - MLT1L LTR MaLR -113 502 240 226 211 29 115 chr11 37757638 37757742 -113025811 - MLT1L LTR MaLR -482 133 39 311 294 126 19 chr11 37758810 37759093 -113024460 + MLT1L LTR MaLR 168 497 -112 2369 63 0 13 chr11 37759369 37759670 -113023883 + AluY SINE Alu 1 297 -14 392 256 69 12 chr11 37760955 37761115 -113022438 + MIR SINE MIR 14 182 -80 192 200 0 0 chr11 37761615 37761655 -113021898 + (CA)n Simple_repeat Simple_repeat 1 40 0 2077 112 7 3 chr11 37762428 37762715 -113020838 + AluJo SINE Alu 3 290 -22 338 289 21 70 chr11 37762982 37763124 -113020429 - MIR SINE MIR -10 252 118 1608 164 0 23 chr11 37763589 37763851 -113019702 + AluSx SINE Alu 43 298 -14 180 347 21 0 chr11 37764063 37764158 -113019395 + MIR SINE MIR 34 130 -78 243 189 0 0 chr11 37765654 37765707 -113017846 + (CAT)n Simple_repeat Simple_repeat 1 53 0 225 301 0 60 chr11 37766813 37766896 -113016657 - MIR3 SINE MIR -50 158 81 230 311 66 33 chr11 37766905 37767056 -113016497 + L2 LINE L2 2939 3094 -178 475 264 176 0 chr11 37767107 37767289 -113016264 - MIR SINE MIR -46 216 3 719 252 145 12 chr11 37767379 37767607 -113015946 - MLT1L LTR MaLR 0 615 266 502 257 45 17 chr11 37767621 37767800 -113015753 - MLT1L LTR MaLR -297 318 135 1540 201 5 69 chr11 37768557 37768618 -113014935 - MLT1A1 LTR MaLR -11 354 291 1732 139 0 74 chr11 37768618 37768928 -113014625 + AluSx SINE Alu 4 290 -22 542 28 14 0 chr11 37768928 37769000 -113014553 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 1540 201 5 69 chr11 37769000 37769025 -113014528 - MLT1A1 LTR MaLR -73 292 267 201 39 0 0 chr11 37769025 37769051 -113014502 + (GA)n Simple_repeat Simple_repeat 2 27 0 1540 201 5 69 chr11 37769051 37769340 -113014213 - MLT1A1 LTR MaLR -98 267 1 191 269 13 13 chr11 37769914 37769992 -113013561 - MIR SINE MIR -38 224 147 618 254 21 0 chr11 37770044 37770186 -113013367 - MIR SINE MIR -105 157 13 386 299 130 0 chr11 37770326 37770503 -113013050 + MIR SINE MIR 53 252 -10 278 299 20 27 chr11 37770527 37770674 -113012879 - MIR SINE MIR -64 198 53 285 248 129 10 chr11 37771581 37771682 -113011871 - L2 LINE L2 -4 3309 3197 205 282 64 0 chr11 37771984 37772062 -113011491 - L2 LINE L2 -19 3294 3212 357 314 0 0 chr11 37772967 37773072 -113010481 + MIR SINE MIR 39 143 -65 219 134 0 60 chr11 37773813 37773880 -113009673 + (AGGGGG)n Simple_repeat Simple_repeat 5 67 0 31 26 0 0 chr11 37774296 37774334 -113009219 + GC_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr11 37774412 37774441 -113009112 + GC_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr11 37776263 37776292 -113007261 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 37776373 37776394 -113007159 + AT_rich Low_complexity Low_complexity 1 21 0 233 209 330 0 chr11 37778219 37778310 -113005243 + MIR SINE MIR 88 208 -54 183 42 0 0 chr11 37778373 37778397 -113005156 + (A)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr11 37778655 37778679 -113004874 + AT_rich Low_complexity Low_complexity 1 24 0 301 190 38 25 chr11 37778968 37779047 -113004506 + MIR SINE MIR 161 240 -22 277 282 154 0 chr11 37779669 37779779 -113003774 + MIR3 SINE MIR 32 158 -50 608 274 28 32 chr11 37779787 37780035 -113003518 + MER112 DNA MER1_type 8 254 -6 201 191 0 0 chr11 37780035 37780077 -113003476 + MIR3 SINE MIR 153 194 -14 23 0 0 0 chr11 37780661 37780684 -113002869 + AT_rich Low_complexity Low_complexity 1 23 0 1309 177 28 54 chr11 37781052 37781084 -113002469 - L1MB4 LINE L1 0 6180 6149 2324 99 0 3 chr11 37781084 37781386 -113002167 - AluSx SINE Alu -11 301 1 1309 177 28 54 chr11 37781386 37781670 -113001883 - L1MB4 LINE L1 -31 6149 5872 282 280 13 0 chr11 37781978 37782053 -113001500 - L2 LINE L2 -43 3229 3154 233 292 58 50 chr11 37782602 37782722 -113000831 - MIR SINE MIR -122 140 20 2285 85 3 3 chr11 37782766 37783060 -113000493 - AluY SINE Alu -17 294 1 22 35 0 0 chr11 37783070 37783099 -113000454 + AT_rich Low_complexity Low_complexity 1 29 0 767 189 0 0 chr11 37783155 37783282 -113000271 - FLAM_C SINE Alu -10 133 7 550 269 70 76 chr11 37783334 37783676 -112999877 - L1MEd LINE L1 -4885 1234 895 575 194 26 65 chr11 37783855 37784010 -112999543 - MER53 DNA DNA -13 176 28 1512 242 176 35 chr11 37784069 37784693 -112998860 - L1MEd LINE L1 -5406 713 2 353 354 93 59 chr11 37786101 37786542 -112997011 - L2 LINE L2 -2 3270 2815 789 228 99 26 chr11 37786613 37786846 -112996707 + MIR SINE MIR 10 259 -3 2210 137 103 0 chr11 37786935 37787323 -112996230 + MSTA LTR MaLR 1 428 0 332 185 46 15 chr11 37787450 37787515 -112996038 + AluS SINE Alu 1 67 -236 1588 177 45 24 chr11 37788441 37788729 -112994824 - AluJb SINE Alu -18 294 1 2235 111 3 3 chr11 37788759 37789056 -112994497 + AluSg SINE Alu 1 297 -13 289 232 0 14 chr11 37789201 37789270 -112994283 + LTR67 LTR ERVL 486 553 -4 1007 233 9 9 chr11 37789517 37789727 -112993826 + MER63A DNA MER1_type 1 210 0 427 284 41 78 chr11 37789776 37789925 -112993628 - MIR SINE MIR 0 262 126 2574 71 0 0 chr11 37789925 37790235 -112993318 + AluY SINE Alu 1 310 -1 427 284 41 78 chr11 37790235 37790356 -112993197 - MIR SINE MIR -136 126 2 2234 108 0 7 chr11 37790582 37790879 -112992674 - AluSg SINE Alu -10 300 6 382 285 182 6 chr11 37790890 37791055 -112992498 - MIR SINE MIR 0 262 69 337 289 83 8 chr11 37791082 37791203 -112992350 - MIR SINE MIR -116 146 17 3366 151 22 3 chr11 37792203 37792787 -112990766 + L1MB3 LINE L1 5589 6183 0 281 263 82 0 chr11 37792936 37793040 -112990513 - MIR SINE MIR -62 146 52 851 308 20 0 chr11 37793659 37793909 -112989644 + MIR SINE MIR 8 262 0 22 0 0 0 chr11 37794767 37794789 -112988764 + AT_rich Low_complexity Low_complexity 1 22 0 194 184 0 0 chr11 37795083 37795121 -112988432 - L2 LINE L2 0 3313 3276 2299 94 10 0 chr11 37795778 37796066 -112987487 + AluSg SINE Alu 1 291 -19 349 234 36 63 chr11 37796153 37796264 -112987289 + L1ME LINE L1 5627 5734 -436 1857 166 10 7 chr11 37796363 37796664 -112986889 - AluJo SINE Alu -9 303 2 264 250 0 14 chr11 37796686 37796758 -112986795 + LTR33A LTR ERVL 446 516 -7 207 0 0 0 chr11 37796951 37796974 -112986579 + (TC)n Simple_repeat Simple_repeat 1 23 0 299 336 25 0 chr11 37797224 37797346 -112986207 + L2 LINE L2 3183 3307 -6 604 263 64 6 chr11 37797440 37797611 -112985942 - MIR SINE MIR -3 259 79 752 279 106 0 chr11 37798053 37798279 -112985274 + MIR SINE MIR 2 251 -11 369 277 68 16 chr11 37799217 37799399 -112984154 + MIR SINE MIR 44 234 -28 2094 104 11 7 chr11 37799527 37799806 -112983747 - AluSx SINE Alu -31 281 2 712 202 13 3 chr11 37799835 37800069 -112983484 + AluJo SINE Alu 1 303 -9 366 216 196 0 chr11 37800178 37800326 -112983227 + MER104 DNA MER2_type 4 180 0 25 51 0 0 chr11 37800487 37800526 -112983027 + AT_rich Low_complexity Low_complexity 1 39 0 349 338 41 0 chr11 37800526 37800671 -112982882 + MIR SINE MIR 57 207 -55 1917 166 14 30 chr11 37800878 37801245 -112982308 - MLT1A1 LTR MaLR -4 361 1 1515 213 32 47 chr11 37801533 37801951 -112981602 - MLT1D LTR MaLR -105 400 1 700 259 15 34 chr11 37801969 37802232 -112981321 - MIR SINE MIR 0 262 5 564 284 54 124 chr11 37802372 37802911 -112980642 - MLT1K LTR MaLR -4 584 84 303 86 52 69 chr11 37802957 37803004 -112980549 - MLT1L LTR MaLR -75 540 495 1220 152 65 9 chr11 37803004 37803221 -112980332 - MSTB1 LTR MaLR 0 432 204 312 172 0 0 chr11 37803223 37803281 -112980272 + GA-rich Low_complexity Low_complexity 1 58 0 793 186 45 57 chr11 37803281 37803539 -112980014 - MSTB2 LTR MaLR -201 231 1 786 247 136 38 chr11 37803614 37803930 -112979623 - MLT1L LTR MaLR -223 392 46 647 289 117 18 chr11 37804199 37804472 -112979081 + MLT1H LTR MaLR 1 300 -249 638 273 45 23 chr11 37804676 37804896 -112978657 + MLT1H LTR MaLR 331 555 0 423 312 43 14 chr11 37804896 37805034 -112978519 - MIR3 SINE MIR -42 166 25 1822 157 16 35 chr11 37805056 37805374 -112978179 + AluJo SINE Alu 1 312 0 694 276 46 42 chr11 37805448 37805709 -112977844 - MIR SINE MIR 0 262 1 221 221 15 44 chr11 37806119 37806187 -112977366 + GA-rich Low_complexity Low_complexity 4 69 0 570 288 8 0 chr11 37806272 37806404 -112977149 - MER94 DNA DNA 0 134 2 242 202 64 85 chr11 37806455 37806549 -112977004 - L2 LINE L2 -42 3230 3139 210 305 29 9 chr11 37806603 37806708 -112976845 - L2 LINE L2 -270 3002 2896 23 0 0 0 chr11 37806839 37806862 -112976691 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr11 37807124 37807151 -112976402 + (GA)n Simple_repeat Simple_repeat 2 28 0 2128 113 3 49 chr11 37807334 37807661 -112975892 - AluSx SINE Alu 0 312 1 47 19 0 0 chr11 37807929 37807983 -112975570 + AT_rich Low_complexity Low_complexity 1 54 0 267 306 98 29 chr11 37808177 37808350 -112975203 - L2 LINE L2 -456 2858 2674 2228 89 3 7 chr11 37808484 37808805 -112974748 - AluSc SINE Alu 0 320 1 387 293 131 20 chr11 37809252 37809604 -112973949 + L1ME LINE L1 4942 5332 -814 322 229 101 0 chr11 37809644 37809753 -112973800 + L1ME LINE L1 5395 5514 -648 27 29 0 0 chr11 37809982 37810016 -112973537 + AT_rich Low_complexity Low_complexity 1 34 0 259 310 0 0 chr11 37810111 37810182 -112973371 - tRNA-Thr-ACA tRNA tRNA -3 73 3 308 230 58 11 chr11 37811386 37811473 -112972080 + MIR SINE MIR 45 135 -73 807 114 98 15 chr11 37811743 37811875 -112971678 + MER39B LTR ERV1 1 143 -510 1267 82 6 6 chr11 37811875 37812046 -112971507 - AluSp SINE Alu -17 296 126 3004 148 20 26 chr11 37812046 37812306 -112971247 + MER39B LTR ERV1 151 408 -245 4015 101 20 0 chr11 37812306 37812849 -112970704 - MER41A LTR ERV1 0 554 1 3004 148 20 26 chr11 37812849 37813094 -112970459 + MER39B LTR ERV1 408 653 0 326 267 11 0 chr11 37813148 37813238 -112970315 + MLT-int LTR MaLR 32 122 -1613 2131 88 4 0 chr11 37813246 37813518 -112970035 + AluSp SINE Alu 2 274 -39 1072 269 26 3 chr11 37813536 37813845 -112969708 + MLT1F-int LTR MaLR 291 606 -765 315 293 83 38 chr11 37814061 37814218 -112969335 + MLT1F-int LTR MaLR 715 878 -493 2382 90 0 7 chr11 37814516 37814816 -112968737 - AluSx SINE Alu -14 298 1 504 264 54 20 chr11 37814929 37815077 -112968476 + MLT1F-int LTR MaLR 1219 1371 0 2270 218 81 8 chr11 37815077 37815582 -112967971 + MLT1F LTR MaLR 1 542 0 2074 140 0 0 chr11 37815738 37816031 -112967522 + AluSx SINE Alu 1 293 -19 1944 131 19 22 chr11 37816239 37816552 -112967001 + AluJb SINE Alu 1 312 0 367 272 33 72 chr11 37817352 37817532 -112966021 - MIR SINE MIR -72 190 18 25 0 0 0 chr11 37818275 37818300 -112965253 + GC_rich Low_complexity Low_complexity 1 25 0 29 60 0 0 chr11 37818333 37818383 -112965170 + GC_rich Low_complexity Low_complexity 1 50 0 505 296 11 11 chr11 37818847 37819097 -112964456 + GA-rich Low_complexity Low_complexity 1 250 0 193 205 0 0 chr11 37819926 37819965 -112963588 + L2 LINE L2 3275 3313 0 1883 260 86 30 chr11 37820292 37821107 -112962446 - L1ME3A LINE L1 -89 6056 5288 1986 123 40 17 chr11 37821107 37821407 -112962146 - AluSx SINE Alu -5 307 1 1883 260 86 30 chr11 37821407 37822129 -112961424 - L1ME3A LINE L1 -857 5288 4367 849 199 32 0 chr11 37822137 37822293 -112961260 + FRAM SINE Alu 1 161 -15 847 267 76 29 chr11 37822320 37822796 -112960757 - L1ME3A LINE L1 -1808 4321 3824 1519 182 7 18 chr11 37822897 37823172 -112960381 - AluJo SINE Alu -20 292 21 509 269 48 70 chr11 37823311 37823623 -112959930 - L1ME3A LINE L1 -2323 3806 3502 4078 92 5 4 chr11 37823714 37824267 -112959286 - L1PA11 LINE L1 0 6174 5621 459 292 0 23 chr11 37824286 37824457 -112959096 - L1ME3A LINE L1 -2646 3483 3317 310 259 62 45 chr11 37824676 37824788 -112958765 - L1ME3A LINE L1 -5478 641 528 2076 126 0 11 chr11 37824976 37825298 -112958255 - AluSq SINE Alu 0 319 1 2071 136 3 3 chr11 37825320 37825340 -112958213 - AluSx SINE Alu 0 312 293 190 0 0 0 chr11 37825340 37825361 -112958192 + (TTG)n Simple_repeat Simple_repeat 1 180 0 2071 136 3 3 chr11 37825361 37825642 -112957911 - AluSx SINE Alu -18 294 1 400 225 45 9 chr11 37825805 37825916 -112957637 - L1MD3 LINE L1 -155 7840 7726 * 661 185 0 8 chr11 37825907 37826037 -112957516 - L1MC3 LINE L1 -314 7471 7343 244 202 164 39 chr11 37826037 37826141 -112957412 - L1MC3 LINE L1 -1902 5906 5790 495 272 139 11 chr11 37826585 37826765 -112956788 - L2 LINE L2 0 3313 3111 490 280 78 16 chr11 37826795 37826988 -112956565 + MIR SINE MIR 58 262 0 511 226 107 79 chr11 37827670 37827922 -112955631 + MER112 DNA MER1_type 2 260 0 437 278 147 28 chr11 37828575 37828827 -112954726 - L2 LINE L2 -62 3251 2970 281 310 0 0 chr11 37829722 37829809 -112953744 + (TG)n Simple_repeat Simple_repeat 2 88 0 246 267 155 26 chr11 37830204 37830320 -112953233 - L2 LINE L2 -5 3308 3178 332 360 70 0 chr11 37830578 37830692 -112952861 + L2 LINE L2 3122 3243 -29 919 252 78 87 chr11 37830839 37831096 -112952457 - MLT1J LTR MaLR -37 474 221 1889 99 0 0 chr11 37831096 37831339 -112952214 - AluSc SINE Alu -66 243 1 919 252 78 87 chr11 37831339 37831554 -112951999 - MLT1J LTR MaLR -290 221 6 738 299 14 0 chr11 37831571 37831785 -112951768 + MIR SINE MIR 46 262 0 577 274 130 9 chr11 37832521 37832751 -112950802 - MIR SINE MIR -3 259 2 39 22 0 0 chr11 37832901 37832947 -112950606 + AT_rich Low_complexity Low_complexity 1 46 0 282 269 77 0 chr11 37833031 37833135 -112950418 - MIR SINE MIR 0 262 151 661 295 183 38 chr11 37833192 37833902 -112949651 - L2 LINE L2 0 3313 2497 192 68 45 23 chr11 37834099 37834143 -112949410 + C-rich Low_complexity Low_complexity 1 45 0 1656 160 48 0 chr11 37834151 37834419 -112949134 - AluSx SINE Alu -31 281 1 970 264 32 38 chr11 37835016 37835331 -112948222 - MER102a DNA MER1_type 0 330 18 611 257 7 7 chr11 37835348 37835488 -112948065 - MIR3 SINE MIR -48 160 21 414 284 40 44 chr11 37835939 37836164 -112947389 - L1MC4a LINE L1 -1902 5906 5683 227 277 72 12 chr11 37836229 37836312 -112947241 - L1MC4a LINE L1 -601 5573 5486 217 298 123 18 chr11 37836573 37836687 -112946866 + MIR SINE MIR 53 178 -84 1102 84 0 0 chr11 37837472 37837614 -112945939 - AluSg/x SINE Alu -6 304 163 567 285 62 60 chr11 37837637 37838006 -112945547 + MER115 DNA AcHobo 133 502 -191 21 36 0 0 chr11 37839256 37839284 -112944269 + AT_rich Low_complexity Low_complexity 1 28 0 255 333 37 0 chr11 37839349 37839430 -112944123 - L2 LINE L2 -52 3220 3137 933 230 59 14 chr11 37839464 37839664 -112943889 - MIR SINE MIR -26 236 24 799 191 181 35 chr11 37839664 37839946 -112943607 + MER33 DNA MER1_type 1 323 -1 933 230 59 14 chr11 37839946 37839967 -112943586 - MIR SINE MIR -238 24 5 505 314 101 14 chr11 37839988 37840195 -112943358 - MIR SINE MIR -13 249 25 539 179 0 0 chr11 37840217 37840301 -112943252 - FRAM/FAM SINE Alu -95 81 1 22 35 0 0 chr11 37840368 37840397 -112943156 + AT_rich Low_complexity Low_complexity 1 29 0 2322 70 0 0 chr11 37841190 37841476 -112942077 - AluSg SINE Alu -19 291 6 228 35 0 0 chr11 37841876 37841905 -112941648 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 206 316 0 0 chr11 37841920 37841977 -112941576 - MIR SINE MIR -7 255 199 817 121 50 111 chr11 37841977 37842066 -112941487 - L1MB3 LINE L1 -8 6175 6103 2183 129 0 3 chr11 37842066 37842377 -112941176 - AluSx SINE Alu -2 310 1 817 121 50 111 chr11 37842377 37842485 -112941068 - L1MB3 LINE L1 -80 6103 5990 355 315 148 6 chr11 37842494 37842656 -112940897 - MIR SINE MIR -74 188 4 258 200 207 7 chr11 37843900 37844035 -112939518 - L1ME4a LINE L1 -1 6120 5959 911 215 16 0 chr11 37844209 37844395 -112939158 - MER5A DNA MER1_type 0 189 1 304 292 208 25 chr11 37846244 37846446 -112937107 - MIR SINE MIR -18 244 6 2001 124 39 28 chr11 37846933 37847158 -112936395 - MER47A DNA MER2_type -1957 366 134 2313 108 0 3 chr11 37847158 37847465 -112936088 - AluY SINE Alu -5 306 1 2001 124 39 28 chr11 37847465 37847601 -112935952 - MER47A DNA MER2_type -2189 134 1 193 359 108 24 chr11 37847683 37847850 -112935703 - MER5A DNA MER1_type 0 189 9 1047 174 108 0 chr11 37847921 37848133 -112935420 - MER46A DNA MER2_type -1 235 1 2150 87 204 22 chr11 37848143 37848163 -112935390 - MER57B LTR ERV1 0 434 419 2477 79 3 0 chr11 37848163 37848468 -112935085 + AluY SINE Alu 1 306 -5 2150 87 204 22 chr11 37848468 37848814 -112934739 - MER57B LTR ERV1 -15 419 1 1409 88 118 25 chr11 37848814 37849052 -112934501 - MER57B-int LTR ERV1 0 7537 7278 703 115 25 8 chr11 37849055 37849177 -112934376 - LTR54B LTR ERV1 -370 128 5 16069 102 59 42 chr11 37849177 37849308 -112934245 - MER57B-int LTR ERV1 -387 7150 7023 185 258 0 32 chr11 37849308 37849370 -112934183 + L3 LINE CR1 1065 1124 -453 16069 102 59 42 chr11 37849370 37851657 -112931896 - MER57B-int LTR ERV1 -514 7023 4776 2238 74 7 20 chr11 37851657 37851954 -112931599 - AluY SINE Alu -10 301 9 16069 102 59 42 chr11 37851954 37852087 -112931466 - MER57B-int LTR ERV1 -2761 4776 4647 2177 107 3 7 chr11 37852087 37852378 -112931175 + AluSc SINE Alu 1 290 -19 201 39 0 0 chr11 37852382 37852408 -112931145 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 16069 102 59 42 chr11 37852408 37852587 -112930966 - MER57B-int LTR ERV1 -2892 4645 4305 3144 37 3 0 chr11 37852587 37852969 -112930584 - L1PA4 LINE L1 -3 6152 5770 5979 24 0 7 chr11 37852969 37853679 -112929874 - L1PA4 LINE L1 0 6155 5451 5580 26 10 5 chr11 37853679 37854789 -112928764 - L1PA4 LINE L1 -374 5781 4668 * 6991 39 7 0 chr11 37854781 37855674 -112927879 + L1PA4 LINE L1 3798 4696 -1450 3589 163 72 57 chr11 37855674 37856715 -112926838 - MER57B-int LTR ERV1 -3233 4304 3248 747 103 27 55 chr11 37856702 37856848 -112926705 - MER57B-int LTR ERV1 -4615 2922 2781 * 567 157 61 26 chr11 37856844 37856959 -112926594 - MER57B-int LTR ERV1 -4908 2629 2511 * 3472 146 40 8 chr11 37856961 37857741 -112925812 - MER57B-int LTR ERV1 -4231 3585 648 42305 37 3 2 chr11 37858299 37864444 -112919109 + L1PA3 LINE L1 13 6154 -1 1181 94 0 0 chr11 37864517 37864677 -112918876 - MER57B-int LTR ERV1 -6585 952 793 * 4058 145 24 1 chr11 37864675 37865336 -112918217 - MER57B-int LTR ERV1 -6860 677 2 2991 108 9 0 chr11 37865337 37865764 -112917789 - MER57B LTR ERV1 0 434 4 3048 128 68 18 chr11 37865892 37866438 -112917115 - MER34C LTR ERV1 -12 573 1 1512 161 17 10 chr11 37866446 37866744 -112916809 + L1MB8 LINE L1 5877 6176 -2 441 219 30 112 chr11 37866918 37867087 -112916466 + MIR SINE MIR 64 218 -44 1153 168 0 16 chr11 37867098 37867283 -112916270 + AluJb SINE Alu 108 289 -23 21 0 0 0 chr11 37868587 37868608 -112914945 + AT_rich Low_complexity Low_complexity 1 21 0 325 209 23 35 chr11 37868815 37868901 -112914652 - MIR SINE MIR -109 153 69 312 321 74 33 chr11 37869780 37869995 -112913558 - MIR SINE MIR -29 233 10 321 82 0 0 chr11 37870919 37870968 -112912585 + (TG)n Simple_repeat Simple_repeat 2 50 0 2662 109 64 7 chr11 37871173 37871577 -112911976 - MSTA LTR MaLR 0 428 2 704 295 62 5 chr11 37872306 37872530 -112911023 + MIR SINE MIR 15 251 -11 1316 165 12 31 chr11 37872947 37873201 -112910352 + LTR8 LTR ERV1 443 691 0 378 295 104 49 chr11 37873248 37873431 -112910122 + MIR3 SINE MIR 15 207 -1 279 65 87 0 chr11 37873869 37873915 -112909638 - MADE1 DNA Mariner 0 80 31 5324 186 53 27 chr11 37873938 37876430 -112907123 - L1MC1 LINE L1 -5 6328 3783 2093 128 14 0 chr11 37876430 37876727 -112906826 - AluSx SINE Alu -11 301 1 5324 186 53 27 chr11 37876727 37876783 -112906770 - L1MC1 LINE L1 -2550 3783 3730 312 215 149 8 chr11 37876818 37876939 -112906614 - L1ME4a LINE L1 -16 6105 5968 3819 97 16 2 chr11 37877842 37878388 -112905165 - MER41A LTR ERV1 0 554 1 493 196 0 15 chr11 37878517 37878650 -112904903 + CT-rich Low_complexity Low_complexity 2 132 0 206 221 104 52 chr11 37878752 37878829 -112904724 + MIR3 SINE MIR 108 188 -20 280 288 0 0 chr11 37879905 37879978 -112903575 + MIR3 SINE MIR 121 193 -15 409 350 68 16 chr11 37880278 37880577 -112902976 + L1MC4a LINE L1 5462 5785 -2023 393 58 0 0 chr11 37880577 37880629 -112902924 + (CA)n Simple_repeat Simple_repeat 2 53 0 409 350 68 16 chr11 37880629 37880695 -112902858 + L1MC4a LINE L1 5785 5846 -1962 271 228 0 25 chr11 37880758 37880837 -112902716 + L1ME4a LINE L1 5932 6008 -113 2146 117 0 7 chr11 37880859 37881159 -112902394 - AluSx SINE Alu -14 298 1 1919 142 20 13 chr11 37882401 37882704 -112900849 + AluJo SINE Alu 1 305 -7 409 306 145 32 chr11 37883137 37883323 -112900230 - MIR SINE MIR -51 211 5 2112 119 0 3 chr11 37883567 37883860 -112899693 + AluSx SINE Alu 1 292 -20 301 272 35 0 chr11 37884256 37884370 -112899183 - L1MC4 LINE L1 -1 8041 7924 680 303 32 25 chr11 37884443 37884724 -112898829 + L1MDa LINE L1 20 302 -6238 625 204 47 17 chr11 37885191 37885363 -112898190 + L1MDa LINE L1 908 1084 -5459 669 208 0 0 chr11 37885396 37885521 -112898032 + AluJb SINE Alu 179 303 -9 1840 193 111 31 chr11 37885521 37886142 -112897411 + L1MDa LINE L1 1098 1768 -4772 530 210 75 9 chr11 37886161 37886375 -112897178 - L1M4 LINE L1 -1621 4525 4298 570 51 26 0 chr11 37886375 37886453 -112897100 - Alu SINE Alu -12 299 220 2611 233 48 3 chr11 37886454 37887138 -112896415 - L1M4 LINE L1 -1833 4313 3599 395 344 72 79 chr11 37888013 37888318 -112895235 - L2 LINE L2 -33 3239 2937 460 325 51 47 chr11 37888556 37888811 -112894742 - MIR SINE MIR 0 262 7 21 36 0 0 chr11 37888970 37888998 -112894555 + AT_rich Low_complexity Low_complexity 1 28 0 690 311 13 17 chr11 37889775 37890013 -112893540 - MIR SINE MIR -14 248 12 189 0 0 0 chr11 37890018 37890039 -112893514 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 491 287 16 8 chr11 37890365 37890487 -112893066 - MIR SINE MIR -69 139 17 728 353 21 25 chr11 37892391 37892674 -112890879 - L2 LINE L2 -1 3271 2990 433 367 38 9 chr11 37892713 37892923 -112890630 - L2 LINE L2 -464 2850 2635 791 187 0 15 chr11 37892925 37893059 -112890494 + FLAM_A SINE Alu 2 133 0 2282 109 0 10 chr11 37893077 37893390 -112890163 + AluSq SINE Alu 1 310 -3 765 228 124 39 chr11 37894686 37894919 -112888634 - MIR SINE MIR 0 262 10 1945 103 15 0 chr11 37895381 37895643 -112887910 + AluSc SINE Alu 36 301 -8 405 276 8 55 chr11 37896143 37896270 -112887283 + MIR SINE MIR 20 140 -68 394 254 95 24 chr11 37897298 37897424 -112886129 - L2 LINE L2 0 3272 3138 1713 177 0 41 chr11 37897443 37897766 -112885787 - AluJb SINE Alu 0 311 1 209 259 19 0 chr11 37897828 37897882 -112885671 - MIR SINE MIR -17 245 191 185 105 0 26 chr11 37897882 37897920 -112885633 + (TA)n Simple_repeat Simple_repeat 2 38 0 548 98 66 30 chr11 37897948 37898353 -112885200 + (TTATA)n Simple_repeat Simple_repeat 1 419 0 660 238 40 7 chr11 37898370 37898521 -112885032 - MIR SINE MIR -105 157 2 332 220 144 8 chr11 37899187 37899305 -112884248 + MER112 DNA MER1_type 121 254 -6 480 221 53 0 chr11 37899336 37899431 -112884122 - MER91B DNA MER1_type 0 190 91 326 256 33 50 chr11 37899454 37899575 -112883978 - MER91B DNA MER1_type -70 120 2 475 147 21 173 chr11 37899711 37899828 -112883725 - MER53 DNA DNA 0 189 110 864 151 29 0 chr11 37899828 37900000 -112883553 + L1MA7 LINE L1 6104 6280 -11 475 147 21 173 chr11 37900000 37900073 -112883480 - MER53 DNA DNA -79 110 28 5066 83 57 1 chr11 37900075 37900800 -112882753 - L1PA11 LINE L1 0 6174 5410 493 193 9 37 chr11 37900904 37901013 -112882540 - MER7A DNA MER2_type -242 104 1 383 335 49 57 chr11 37901477 37901722 -112881831 - L2 LINE L2 -2 3270 3028 421 277 15 22 chr11 37901749 37901886 -112881667 - L2 LINE L2 -2 3311 3176 379 238 0 0 chr11 37901941 37902021 -112881532 - L1M1 LINE L1 -7068 497 418 2180 126 0 3 chr11 37902434 37902743 -112880810 - AluJb SINE Alu -4 308 1 25 31 0 0 chr11 37903741 37903773 -112879780 + AT_rich Low_complexity Low_complexity 1 32 0 397 306 57 26 chr11 37904226 37904419 -112879134 - MIR SINE MIR -56 206 8 279 0 0 0 chr11 37906276 37906307 -112877246 + (TG)n Simple_repeat Simple_repeat 2 32 0 232 214 18 0 chr11 37906309 37906365 -112877188 + (TA)n Simple_repeat Simple_repeat 1 57 0 775 288 9 35 chr11 37906422 37906648 -112876905 + MIR SINE MIR 28 247 -15 207 315 144 0 chr11 37906689 37906800 -112876753 + L2 LINE L2 1711 1837 -1477 470 203 31 47 chr11 37906801 37906929 -112876624 - MER106B DNA MER1_type 0 1059 934 1665 263 151 44 chr11 37906930 37907873 -112875680 + L2 LINE L2 2163 3208 -105 1259 109 0 0 chr11 37907873 37908038 -112875515 - AluSq SINE Alu -140 173 9 385 274 0 11 chr11 37908041 37908136 -112875417 + L2 LINE L2 3216 3309 -4 889 295 68 4 chr11 37909985 37910596 -112872957 + MER115 DNA AcHobo 1 688 -5 2361 94 0 0 chr11 37910753 37911060 -112872493 - AluSg SINE Alu -3 307 1 845 257 83 69 chr11 37911589 37912084 -112871469 - L1MC4a LINE L1 -1981 5827 5326 650 257 135 33 chr11 37912270 37912573 -112870980 - MLT1J2 LTR MaLR 0 450 113 243 0 0 0 chr11 37913284 37913311 -112870242 + (GA)n Simple_repeat Simple_repeat 1 27 0 197 410 0 0 chr11 37913628 37913711 -112869842 + MIR3 SINE MIR 118 200 -8 1876 103 0 0 chr11 37913950 37914193 -112869360 + AluSc SINE Alu 1 243 -66 511 270 155 13 chr11 37914224 37914450 -112869103 + MLT1J LTR MaLR 217 474 -37 332 360 70 0 chr11 37914597 37914711 -112868842 - L2 LINE L2 -29 3243 3122 246 267 155 26 chr11 37914969 37915085 -112868468 + L2 LINE L2 3178 3308 -5 204 40 0 0 chr11 37915516 37915541 -112868012 + (CA)n Simple_repeat Simple_repeat 2 26 0 455 273 149 25 chr11 37916466 37916708 -112866845 + L2 LINE L2 2970 3241 -72 511 226 107 79 chr11 37917370 37917622 -112865931 - MER112 DNA MER1_type 0 260 2 490 280 78 16 chr11 37918304 37918497 -112865056 - MIR SINE MIR 0 262 58 495 272 139 11 chr11 37918527 37918707 -112864846 + L2 LINE L2 3111 3313 0 244 202 164 39 chr11 37919151 37919255 -112864298 + L1MC3 LINE L1 5790 5906 -1902 613 185 0 8 chr11 37919255 37919385 -112864168 + L1MC3 LINE L1 7343 7471 -314 357 225 45 9 chr11 37919376 37919487 -112864066 + L1MD3 LINE L1 7726 7840 -155 * 2068 133 3 3 chr11 37919650 37919972 -112863581 + AluSx SINE Alu 1 312 0 2062 126 0 11 chr11 37919994 37920320 -112863233 + AluSq SINE Alu 1 323 0 278 259 62 45 chr11 37920508 37920620 -112862933 + L1ME LINE L1 528 641 -5478 404 292 0 23 chr11 37920839 37921010 -112862543 + L1ME LINE L1 3317 3483 -2646 3832 92 5 4 chr11 37921029 37921582 -112861971 + L1PA11 LINE L1 5621 6174 0 418 269 48 70 chr11 37921673 37921985 -112861568 + L1ME LINE L1 3502 3806 -2323 1537 182 7 18 chr11 37922124 37922399 -112861154 + AluJo SINE Alu 21 292 -20 1278 284 106 20 chr11 37922500 37923003 -112860550 + L1ME LINE L1 3824 4282 -1847 856 199 32 0 chr11 37923003 37923159 -112860394 - FRAM SINE Alu -5 161 1 1278 284 106 20 chr11 37923159 37923722 -112859831 + L1ME LINE L1 4282 4982 -1147 225 236 126 8 chr11 37923726 37923853 -112859700 + L1ME LINE L1 5083 5224 -905 1900 141 40 17 chr11 37923888 37924185 -112859368 + AluSx SINE Alu 1 304 -8 428 275 98 50 chr11 37924214 37924552 -112859001 + L1ME LINE L1 5282 5635 -518 751 183 0 8 chr11 37924751 37924877 -112858676 - AluSg1 SINE Alu -184 125 1 2199 73 6 12 chr11 37924877 37925205 -112858348 - L1M1 LINE L1 -4550 3015 2690 7395 28 1 0 chr11 37925259 37926784 -112856769 - L1PA3 LINE L1 0 6155 4627 3849 53 4 0 chr11 37926784 37927292 -112856261 + L1PA8A LINE L1 5361 5870 -261 638 300 111 25 chr11 37929806 37930545 -112853008 - L1M4 LINE L1 -3262 3120 2333 635 246 81 122 chr11 37930835 37931756 -112851797 - HAL1 LINE L1 -761 1746 863 577 216 36 30 chr11 37932200 37932367 -112851186 - MER53 DNA DNA 0 189 22 266 167 56 28 chr11 37932594 37932666 -112850887 - AluSp SINE Alu -127 176 103 13113 161 41 24 chr11 37932666 37935079 -112848474 - L1M1 LINE L1 -3912 3653 1200 6242 83 2 2 chr11 37935182 37936033 -112847520 + L1P LINE L1 4161 5011 -1135 4328 199 32 31 chr11 37936032 37936972 -112846581 + L1M1 LINE L1 12 952 -6613 * 1349 107 46 53 chr11 37936972 37937234 -112846319 + THE1C LTR MaLR 1 260 -115 12164 73 8 2 chr11 37937337 37938918 -112844635 - L1P LINE L1 -4557 1589 1 3090 151 31 28 chr11 37938939 37939517 -112844036 - L1MA8 LINE L1 -3 6288 5709 2644 73 3 58 chr11 37939805 37940186 -112843367 + THE1A-int LTR MaLR 1221 1580 0 2444 100 14 11 chr11 37940188 37940538 -112843015 + THE1A LTR MaLR 5 355 0 968 188 25 5 chr11 37940544 37940741 -112842812 - L1P LINE L1 -786 5360 5160 18239 41 4 0 chr11 37940741 37943609 -112839944 - L1PA5 LINE L1 -3 6151 3275 15739 71 11 6 chr11 37943709 37945804 -112837749 - L1PA5 LINE L1 -3288 2858 753 21865 82 15 13 chr11 37945904 37948971 -112834582 - L1P LINE L1 -3059 3087 15 1078 229 9 9 chr11 37949455 37949665 -112833888 + MER63A DNA MER1_type 1 210 0 263 237 0 53 chr11 37949714 37949790 -112833763 - MIR SINE MIR 0 262 191 1211 137 23 6 chr11 37949837 37949863 -112833690 - MSTA LTR MaLR -8 424 400 2737 25 0 9 chr11 37949863 37950179 -112833374 + AluYb8 SINE Alu 1 313 -5 1211 137 23 6 chr11 37950179 37950365 -112833188 - MSTA LTR MaLR -32 400 206 2285 117 38 46 chr11 37950390 37950757 -112832796 + THE1B LTR MaLR 1 364 0 2400 101 0 0 chr11 37950887 37951194 -112832359 - AluSx SINE Alu -5 307 1 778 212 241 17 chr11 37951357 37951593 -112831960 - L1MD3 LINE L1 -155 7840 7552 297 238 48 48 chr11 37952499 37952604 -112830949 + MIR SINE MIR 48 152 -110 1586 164 0 27 chr11 37953884 37954147 -112829406 - AluSx SINE Alu -14 298 43 434 123 15 0 chr11 37955275 37955340 -112828213 - MSTA LTR MaLR -254 121 56 1583 175 24 69 chr11 37955459 37955883 -112827670 + MER34B LTR ERV1 5 397 -168 1126 229 10 38 chr11 37956438 37956726 -112826827 + MLT1A1 LTR MaLR 1 280 -85 186 43 0 0 chr11 37956750 37956773 -112826780 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 530 100 10 0 chr11 37956775 37956875 -112826678 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 1405 156 14 81 chr11 37956875 37957170 -112826383 - AluSx SINE Alu -22 290 16 599 225 0 77 chr11 37957356 37957565 -112825988 + AluJb SINE Alu 106 298 -14 1378 203 37 51 chr11 37957774 37958162 -112825391 + MLT1D LTR MaLR 30 505 -105 1002 229 72 20 chr11 37958450 37958742 -112824811 + MLT1A1 LTR MaLR 1 307 -58 1156 97 98 0 chr11 38008785 38009052 -112774501 - L1P4 LINE L1 -648 5520 5211 2072 138 41 17 chr11 38009082 38009576 -112773977 - MER6A DNA MER2_type 0 605 1 231 36 0 0 chr11 38010037 38010065 -112773488 + (T)n Simple_repeat Simple_repeat 1 28 0 502 295 34 43 chr11 38010877 38011084 -112772469 - MIR SINE MIR -56 206 2 390 206 159 0 chr11 38012032 38012139 -112771414 - MIR SINE MIR -67 195 72 429 297 17 0 chr11 38012711 38012829 -112770724 - L2 LINE L2 -3 3310 3191 1835 158 7 0 chr11 38012999 38013291 -112770262 + AluSx SINE Alu 1 294 -18 445 279 27 9 chr11 38013738 38013849 -112769704 - L2 LINE L2 -3 3310 3198 337 250 43 9 chr11 38014079 38014195 -112769358 - MER103 DNA DNA -46 120 1 318 200 40 13 chr11 38014656 38014731 -112768822 + L2 LINE L2 3196 3272 0 195 211 96 0 chr11 38015110 38015162 -112768391 + MIR SINE MIR 106 162 -100 302 264 77 51 chr11 38015464 38015627 -112767926 - MIR SINE MIR -37 171 6 665 303 51 73 chr11 38015627 38016039 -112767514 + L2 LINE L2 2344 2746 -568 504 311 84 15 chr11 38016212 38016600 -112766953 + L2 LINE L2 2793 3261 -52 185 309 136 37 chr11 38016684 38016846 -112766707 + MIR SINE MIR 41 218 -44 1670 128 0 13 chr11 38017325 38017560 -112765993 - AluSg SINE Alu -15 295 64 556 140 19 28 chr11 38017560 38017667 -112765886 + AluSg/x SINE Alu 203 308 -4 204 240 20 0 chr11 38017667 38017717 -112765836 - MIR SINE MIR -14 248 198 41663 45 3 0 chr11 38018101 38024239 -112759314 - L1PA4 LINE L1 0 6155 1 2813 153 31 24 chr11 38024260 38024834 -112758719 - L1MA8 LINE L1 -3 6288 5711 993 241 13 30 chr11 38025104 38025340 -112758213 - MIR SINE MIR -2 260 29 531 248 8 168 chr11 38026301 38026539 -112757014 + MIR SINE MIR 2 201 -61 245 279 44 0 chr11 38026537 38026605 -112756948 - L2 LINE L2 0 3313 3243 * 449 291 47 6 chr11 38026605 38026777 -112756776 - MLT1I LTR MaLR -36 373 195 471 275 47 62 chr11 38027024 38027217 -112756336 + MIR3 SINE MIR 19 208 0 21 36 0 0 chr11 38028736 38028764 -112754789 + AT_rich Low_complexity Low_complexity 1 28 0 217 353 191 15 chr11 38028798 38028934 -112754619 - L2 LINE L2 -1 3271 3112 195 129 0 0 chr11 38029337 38029368 -112754185 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 271 284 129 26 chr11 38030281 38030397 -112753156 + MIR SINE MIR 19 146 -62 236 128 0 21 chr11 38031178 38031225 -112752328 + MER63 DNA MER1_type 34 79 -851 316 284 21 60 chr11 38031271 38031476 -112752077 + MIR SINE MIR 20 258 -4 486 290 67 76 chr11 38031823 38032061 -112751492 - MIR SINE MIR -18 244 9 1039 289 36 30 chr11 38032451 38032787 -112750766 + MER102b DNA MER1_type 4 341 0 334 329 44 13 chr11 38033174 38033332 -112750221 + MIR SINE MIR 100 262 0 191 328 0 16 chr11 38033322 38033386 -112750167 + L2 LINE L2 3210 3272 0 * 5748 106 25 13 chr11 38033495 38034284 -112749269 - L1PA16 LINE L1 -1 6165 5387 2023 118 105 12 chr11 38034284 38034607 -112748946 + THE1A LTR MaLR 1 353 -2 12450 81 7 27 chr11 38034609 38035045 -112748508 + THE1A-int LTR MaLR 1 444 -1136 2118 122 0 3 chr11 38035045 38035340 -112748213 + AluSg SINE Alu 7 300 -10 12450 81 7 27 chr11 38035340 38036514 -112747039 + THE1A-int LTR MaLR 444 1580 0 2444 100 14 11 chr11 38036516 38036866 -112746687 + THE1A LTR MaLR 5 355 0 5748 106 25 13 chr11 38036866 38037080 -112746473 - L1PA16 LINE L1 -779 5387 5147 * 41014 68 11 3 chr11 38037067 38043171 -112740382 - L1PA5 LINE L1 -1 6153 1 2457 199 21 30 chr11 38043178 38043735 -112739818 - L1PA16 LINE L1 -973 5173 4622 248 290 121 16 chr11 38044155 38044279 -112739274 - MIR SINE MIR -70 192 56 691 243 91 69 chr11 38044441 38044816 -112738737 - L2 LINE L2 0 3313 2931 370 344 19 94 chr11 38045571 38045932 -112737621 - L2 LINE L2 -1 3271 2938 262 293 93 84 chr11 38046147 38046362 -112737191 - MLT1L LTR MaLR -205 410 194 252 293 57 57 chr11 38046470 38046593 -112736960 - MIR SINE MIR -61 201 79 574 247 62 81 chr11 38046645 38046888 -112736665 - MIR SINE MIR -24 238 6 227 95 48 0 chr11 38048189 38048231 -112735322 + (TATG)n Simple_repeat Simple_repeat 2 45 0 261 258 90 0 chr11 38049813 38049902 -112733651 - MIR SINE MIR -82 180 84 324 238 38 0 chr11 38050200 38050280 -112733273 + MIR SINE MIR 92 174 -88 347 292 46 15 chr11 38053078 38053208 -112730345 - MIR SINE MIR -109 153 20 362 338 116 28 chr11 38055152 38055506 -112728047 + L2 LINE L2 2843 3268 -4 513 265 151 29 chr11 38055590 38055668 -112727885 + L2 LINE L2 2996 3063 -250 180 0 0 0 chr11 38055668 38055688 -112727865 + (CA)n Simple_repeat Simple_repeat 2 21 0 513 265 151 29 chr11 38055688 38055888 -112727665 + L2 LINE L2 3063 3308 -5 445 230 50 43 chr11 38055908 38056047 -112727506 - MIR SINE MIR -116 146 7 201 307 159 23 chr11 38056233 38056321 -112727232 - L2 LINE L2 -39 3233 3134 2319 100 0 0 chr11 38056817 38057116 -112726437 + AluSx SINE Alu 1 299 -13 314 281 124 38 chr11 38057353 38057538 -112726015 + MIR SINE MIR 36 236 -26 285 323 98 23 chr11 38057570 38057703 -112725850 - MIR SINE MIR -108 154 12 866 297 194 11 chr11 38058366 38059078 -112724475 - L2 LINE L2 0 3313 2478 248 289 156 33 chr11 38059331 38059421 -112724132 + MIR SINE MIR 36 136 -72 616 221 107 99 chr11 38059430 38059683 -112723870 - MIR SINE MIR -3 259 5 2445 122 188 169 chr11 38060608 38060917 -112722636 + L1MC3 LINE L1 6761 7063 -722 284 300 8 25 chr11 38060917 38061037 -112722516 + MLT1F1 LTR MaLR 8 125 -442 2445 122 188 169 chr11 38061037 38061470 -112722083 + L1MC3 LINE L1 7063 7638 -147 2226 91 3 16 chr11 38061470 38061988 -112721565 - MER4A LTR ERV1 0 664 1 674 169 92 0 chr11 38061988 38062118 -112721435 + L1MC3 LINE L1 7635 7776 -9 315 269 188 43 chr11 38062191 38062515 -112721038 + L1ME4a LINE L1 5680 6050 -71 556 268 166 19 chr11 38063184 38063389 -112720164 + MIR SINE MIR 28 262 0 3931 76 362 2 chr11 38063593 38064200 -112719353 - LTR12 LTR ERV1 0 826 1 422 227 53 30 chr11 38065429 38065561 -112717992 - Charlie2a DNA MER1_type -11 2851 2717 932 180 0 17 chr11 38065577 38065755 -112717798 - Charlie2a DNA MER1_type -1206 1656 1482 868 240 19 39 chr11 38065942 38066200 -112717353 - Charlie2a DNA MER1_type -2607 255 3 291 279 26 65 chr11 38066413 38066567 -112716986 + L3 LINE CR1 1231 1378 -199 370 246 172 8 chr11 38066630 38066752 -112716801 - MIR SINE MIR -82 180 39 24 0 0 0 chr11 38066835 38066859 -112716694 + AT_rich Low_complexity Low_complexity 1 24 0 1950 128 35 3 chr11 38067018 38067307 -112716246 + AluSg SINE Alu 1 298 -12 300 367 75 0 chr11 38067598 38067718 -112715835 + L2 LINE L2 3139 3267 -5 401 255 184 10 chr11 38068657 38068853 -112714700 + MIR SINE MIR 33 262 0 332 251 140 41 chr11 38069203 38069374 -112714179 - L2 LINE L2 -14 3299 3112 627 332 43 17 chr11 38069643 38069875 -112713678 - MIR SINE MIR -23 239 2 21 57 0 0 chr11 38071237 38071272 -112712281 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr11 38071776 38071800 -112711753 + (A)n Simple_repeat Simple_repeat 1 24 0 206 244 0 0 chr11 38073431 38073472 -112710081 + (CATA)n Simple_repeat Simple_repeat 2 42 0 222 270 146 0 chr11 38075413 38075502 -112708051 - MIR SINE MIR -76 132 31 359 288 70 53 chr11 38076018 38076241 -112707312 - MIR SINE MIR -21 241 5 316 222 28 0 chr11 38080330 38080402 -112703151 + MIR SINE MIR 183 256 -6 330 288 92 61 chr11 38080865 38081028 -112702525 + MIR3 SINE MIR 35 202 -6 242 204 0 0 chr11 38081099 38081148 -112702405 + (TG)n Simple_repeat Simple_repeat 1 49 0 2661 102 70 5 chr11 38081225 38081627 -112701926 + MSTA LTR MaLR 1 428 0 499 237 0 35 chr11 38081644 38081758 -112701795 + MER103 DNA DNA 2 111 -55 312 282 78 19 chr11 38081819 38081922 -112701631 - MIR3 SINE MIR -39 169 61 229 109 43 0 chr11 38082162 38082208 -112701345 + CT-rich Low_complexity Low_complexity 1 48 0 625 277 136 9 chr11 38083835 38084055 -112699498 + MIR SINE MIR 13 260 -2 397 273 35 14 chr11 38084129 38084272 -112699281 + L1ME LINE L1 5627 5772 -349 2116 106 0 7 chr11 38085207 38085509 -112698044 + AluSx SINE Alu 1 300 -12 420 279 89 37 chr11 38086395 38086585 -112696968 - MIR SINE MIR -2 260 61 437 268 128 0 chr11 38086935 38087099 -112696454 - MIR SINE MIR -68 194 10 290 235 122 20 chr11 38087629 38087727 -112695826 + MLT1L LTR MaLR 105 212 -403 328 264 193 36 chr11 38087924 38088064 -112695489 - MIR SINE MIR -79 183 22 517 273 48 36 chr11 38088678 38088843 -112694710 + L2 LINE L2 3106 3272 0 438 262 99 64 chr11 38089527 38089699 -112693854 + MIR SINE MIR 9 186 -76 203 255 0 39 chr11 38089964 38090015 -112693538 + MIR SINE MIR 23 71 -191 242 290 29 0 chr11 38090015 38090084 -112693469 - MER81 DNA DNA 0 114 44 203 320 21 41 chr11 38090847 38090944 -112692609 - MIR SINE MIR -42 220 126 2175 92 0 0 chr11 38091042 38091363 -112692190 + AluSx SINE Alu 1 321 0 362 137 0 129 chr11 38091406 38091530 -112692023 - Charlie7 DNA MER1_type -32 2580 2473 251 231 192 0 chr11 38091556 38091634 -112691919 - Charlie7 DNA MER1_type -2514 98 6 * 276 260 4 4 chr11 38091628 38091718 -112691835 - Charlie8 DNA MER1_type -1002 1415 1355 713 261 5 21 chr11 38091775 38091963 -112691590 - Charlie8 DNA MER1_type -2156 261 77 456 291 202 5 chr11 38092048 38092251 -112691302 + MIR SINE MIR 20 262 0 519 258 46 20 chr11 38092507 38092658 -112690895 + MIR SINE MIR 35 189 -73 2831 215 72 52 chr11 38092736 38093539 -112690014 - MER21B LTR ERV1 -30 833 15 1387 222 60 72 chr11 38093567 38094054 -112689499 + LTR33 LTR ERVL 41 521 0 372 361 16 0 chr11 38094240 38094362 -112689191 - L2 LINE L2 -3 3269 3146 507 280 146 41 chr11 38094559 38094923 -112688630 + MLT1L LTR MaLR 201 602 -13 360 245 51 20 chr11 38094929 38095027 -112688526 - MIR3 SINE MIR -27 181 81 227 149 0 21 chr11 38095521 38095568 -112687985 + (CA)n Simple_repeat Simple_repeat 1 46 0 1835 166 65 39 chr11 38095709 38095866 -112687687 + MLT1A1 LTR MaLR 2 154 -211 2112 103 3 3 chr11 38095866 38096168 -112687385 + AluSg SINE Alu 1 302 -8 1835 166 65 39 chr11 38096168 38096365 -112687188 + MLT1A1 LTR MaLR 154 365 0 1304 217 125 70 chr11 38096804 38097292 -112686261 + MLT1H LTR MaLR 5 519 -30 712 303 43 0 chr11 38097314 38097522 -112686031 - MIR SINE MIR -12 250 34 2046 114 92 25 chr11 38097639 38097955 -112685598 + MER1B DNA MER1_type 1 337 0 1232 273 89 64 chr11 38098037 38098690 -112684863 + L2 LINE L2 2458 3107 -206 1639 107 8 0 chr11 38098697 38098940 -112684613 - AluSx SINE Alu -4 308 64 2089 90 11 0 chr11 38099264 38099541 -112684012 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr11 38099543 38099563 -112683990 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 185 273 237 14 chr11 38099720 38099859 -112683694 - MIR SINE MIR -73 189 20 245 211 28 128 chr11 38099963 38100072 -112683481 - L2 LINE L2 -2 3270 3173 189 74 0 0 chr11 38100305 38100332 -112683221 + (T)n Simple_repeat Simple_repeat 1 27 0 231 266 110 19 chr11 38100602 38100756 -112682797 + L1ME4a LINE L1 5945 6112 -9 210 352 0 0 chr11 38101203 38101274 -112682279 + MIR SINE MIR 121 191 -71 1146 209 122 15 chr11 38101597 38102096 -112681457 + MLT1E2 LTR MaLR 8 626 0 646 303 91 0 chr11 38102155 38102363 -112681190 + MIR SINE MIR 23 249 -13 1523 119 128 62 chr11 38102521 38102593 -112680960 - THE1C LTR MaLR 0 375 309 2183 129 0 0 chr11 38102593 38102903 -112680650 + AluSx SINE Alu 1 310 -2 1523 119 128 62 chr11 38102903 38103182 -112680371 - THE1C LTR MaLR -66 309 1 280 151 27 27 chr11 38103420 38103493 -112680060 - L1ME4a LINE L1 -114 6007 5935 1373 197 151 3 chr11 38103678 38103982 -112679571 - MLT1D LTR MaLR 0 505 157 469 274 27 7 chr11 38104592 38104738 -112678815 - MIR SINE MIR 0 262 114 1011 196 0 0 chr11 38104823 38104986 -112678567 + FAM SINE Alu 1 163 -12 401 250 83 30 chr11 38105047 38105215 -112678338 - L1MC4a LINE L1 -1938 5870 5694 180 0 0 0 chr11 38105742 38105762 -112677791 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 2205 80 7 10 chr11 38105762 38106052 -112677501 - AluSx SINE Alu -21 291 1 231 210 177 0 chr11 38106325 38106387 -112677166 - MLT1L LTR MaLR -77 538 466 467 179 0 63 chr11 38106402 38106497 -112677056 - L1MC4a LINE L1 -2177 5631 5543 2600 264 73 25 chr11 38106527 38107415 -112676138 + L1MC4a LINE L1 5256 6205 -1603 1624 160 3 35 chr11 38107415 38107733 -112675820 + AluJo SINE Alu 5 312 0 2600 264 73 25 chr11 38107733 38107910 -112675643 + L1MC4a LINE L1 6205 6372 -1436 902 265 74 51 chr11 38107923 38108259 -112675294 - MLT1I LTR MaLR -2 407 64 324 319 110 55 chr11 38108320 38108502 -112675051 + L1MC4a LINE L1 6402 6593 -1215 271 207 0 17 chr11 38108502 38108560 -112674993 + HERVL LTR ERVL 1863 1919 -3735 * 1199 307 21 50 chr11 38108559 38108943 -112674610 + HERVL LTR ERVL 2120 2458 -3196 1030 311 80 37 chr11 38109103 38109212 -112674341 - ERVL LTR ERVL -2156 3608 3505 2243 93 0 22 chr11 38109212 38109525 -112674028 - AluSc SINE Alu -3 306 1 1030 311 80 37 chr11 38109525 38109900 -112673653 - ERVL LTR ERVL -2259 3505 3103 350 265 66 42 chr11 38109939 38110105 -112673448 + HERVL LTR ERVL 3677 3846 -1918 356 270 35 26 chr11 38110191 38110306 -112673247 - ERVL LTR ERVL -1063 4701 4586 786 318 101 22 chr11 38110358 38110855 -112672698 + HERVL LTR ERVL 4428 4963 -801 1802 218 111 102 chr11 38111705 38112790 -112670763 + L1MC5 LINE L1 6768 7861 -100 418 204 66 122 chr11 38112832 38113028 -112670525 + LTR33A LTR ERVL 7 191 -332 2122 156 34 5 chr11 38113066 38113288 -112670265 - MLT1B LTR MaLR 0 390 151 1740 141 3 38 chr11 38113288 38113607 -112669946 + AluJb SINE Alu 5 312 0 2122 156 34 5 chr11 38113607 38113763 -112669790 - MLT1B LTR MaLR -239 151 1 1027 194 66 5 chr11 38113764 38113975 -112669578 - MER58A DNA MER1_type 0 224 1 554 259 37 16 chr11 38114011 38114200 -112669353 + LTR33 LTR ERVL 327 519 -2 2383 68 0 10 chr11 38114250 38114560 -112668993 + AluY SINE Alu 1 307 -4 2016 107 4 4 chr11 38114569 38114850 -112668703 + AluSx SINE Alu 1 281 -31 405 0 0 0 chr11 38114856 38114901 -112668652 + (TAA)n Simple_repeat Simple_repeat 2 46 0 325 294 0 0 chr11 38116236 38116321 -112667232 - L2 LINE L2 -2 3270 3186 284 263 17 42 chr11 38116348 38116466 -112667087 + (CATATA)n Simple_repeat Simple_repeat 4 118 0 1582 108 0 33 chr11 38116729 38116969 -112666584 - AluSg/x SINE Alu -11 301 70 974 99 0 0 chr11 38117070 38117201 -112666352 - AluSg SINE Alu -179 131 1 1940 114 7 4 chr11 38117225 38117533 -112666020 + AluSx SINE Alu 1 309 0 281 173 90 135 chr11 38117642 38117774 -112665779 + LTR33A LTR ERVL 86 210 -313 591 163 0 0 chr11 38117774 38117866 -112665687 - MER58B DNA MER1_type 0 341 250 461 293 47 20 chr11 38117868 38118018 -112665535 + MIR SINE MIR 65 218 -44 1320 151 19 0 chr11 38118156 38118362 -112665191 - MER2 DNA MER2_type -135 210 1 519 199 6 12 chr11 38119916 38120087 -112663466 + (TGGA)n Simple_repeat Simple_repeat 4 173 0 469 246 0 11 chr11 38120141 38120320 -112663233 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 268 238 19 0 chr11 38120334 38120439 -112663114 + (TGGA)n Simple_repeat Simple_repeat 1 107 0 970 254 14 5 chr11 38120486 38120706 -112662847 + Charlie8 DNA MER1_type 40 261 -2156 1804 216 25 8 chr11 38120815 38121172 -112662381 - MLT1A1 LTR MaLR -2 363 1 330 286 36 60 chr11 38121467 38121635 -112661918 + L2 LINE L2 2927 3090 -182 329 235 51 20 chr11 38121816 38121914 -112661639 - MER91C DNA MER1_type -13 127 27 501 287 55 42 chr11 38123017 38123254 -112660299 + MLT1K LTR MaLR 98 337 -251 844 165 57 19 chr11 38123438 38123596 -112659957 - AluJ SINE Alu -18 294 131 207 0 0 0 chr11 38123603 38123626 -112659927 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1912 109 50 0 chr11 38123637 38123920 -112659633 - AluSx SINE Alu -15 297 1 804 175 0 0 chr11 38125331 38125457 -112658096 - AluJ SINE Alu -182 130 5 22 0 0 0 chr11 38125857 38125879 -112657674 + AT_rich Low_complexity Low_complexity 1 22 0 806 297 108 20 chr11 38126697 38127040 -112656513 + L2 LINE L2 2847 3219 -94 5890 79 5 17 chr11 38127040 38127851 -112655702 - L1PA13 LINE L1 -2 6161 5361 486 257 0 9 chr11 38127851 38127956 -112655597 + L2 LINE L2 3210 3313 0 432 320 67 5 chr11 38127966 38128160 -112655393 + MIR SINE MIR 22 227 -35 4198 42 4 2 chr11 38128273 38128777 -112654776 + L1PA5 LINE L1 5649 6153 -1 213 290 16 0 chr11 38128987 38129049 -112654504 + (CA)n Simple_repeat Simple_repeat 2 64 0 441 283 94 39 chr11 38129570 38129735 -112653818 + MIR SINE MIR 15 189 -73 407 295 45 9 chr11 38129735 38129847 -112653706 - MER91C DNA MER1_type 0 140 25 280 269 0 0 chr11 38129864 38129931 -112653622 + MIR SINE MIR 188 254 -8 1711 151 26 26 chr11 38129983 38130295 -112653258 + AluSx SINE Alu 1 312 0 263 333 19 28 chr11 38130650 38130758 -112652795 + HAL1 LINE L1 359 465 -2042 537 260 119 74 chr11 38130850 38131162 -112652391 + HAL1 LINE L1 589 914 -1593 219 254 0 0 chr11 38131154 38131217 -112652336 + GA-rich Low_complexity Low_complexity 2 64 0 * 1405 151 0 0 chr11 38131258 38131464 -112652089 + AluSg/x SINE Alu 90 295 -17 2317 92 0 0 chr11 38131468 38131761 -112651792 + AluY SINE Alu 1 293 -18 1146 262 109 52 chr11 38131791 38132719 -112650834 + HAL1 LINE L1 987 1969 -538 207 0 0 0 chr11 38133502 38133525 -112650028 + (T)n Simple_repeat Simple_repeat 1 23 0 808 261 102 33 chr11 38133581 38134003 -112649550 + HAL1 LINE L1 2057 2507 0 786 244 91 22 chr11 38134010 38134330 -112649223 - L1ME4a LINE L1 -12 6109 5768 1244 253 81 22 chr11 38134692 38135139 -112648414 + MLT1K LTR MaLR 1 473 -3 1955 139 0 33 chr11 38135460 38135763 -112647790 - AluSx SINE Alu -19 293 1 326 264 55 0 chr11 38135799 38135911 -112647642 - L1ME4a LINE L1 -326 5795 5691 240 203 78 0 chr11 38135929 38135993 -112647560 + MER69B DNA AcHobo 6 74 -1152 3094 238 80 5 chr11 38136024 38136848 -112646705 + MER69B DNA AcHobo 340 1225 -1 754 239 80 19 chr11 38136859 38137072 -112646481 + MIR SINE MIR 22 247 -15 2290 115 0 0 chr11 38137079 38137384 -112646169 - AluSx SINE Alu -7 305 1 233 317 70 0 chr11 38137401 38137543 -112646010 - L1ME4a LINE L1 -443 5678 5527 480 80 0 136 chr11 38137862 38137908 -112645645 - MADE1 DNA Mariner -4 76 46 2392 102 0 0 chr11 38137908 38138221 -112645332 + AluSq SINE Alu 1 313 0 480 80 0 136 chr11 38138221 38138262 -112645291 - MADE1 DNA Mariner -34 46 1 227 239 28 0 chr11 38139130 38139201 -112644352 + (TAGA)n Simple_repeat Simple_repeat 3 75 0 1997 114 0 46 chr11 38139502 38139808 -112643745 + AluSc SINE Alu 6 297 -12 23 0 0 0 chr11 38140376 38140399 -112643154 + AT_rich Low_complexity Low_complexity 1 23 0 267 301 106 8 chr11 38141223 38141346 -112642207 - L2 LINE L2 -497 2817 2683 296 217 178 39 chr11 38141402 38141632 -112641921 + L1ME4a LINE L1 5822 6083 -38 1438 188 28 35 chr11 38141647 38141760 -112641793 + AluJb SINE Alu 1 113 -208 1885 140 91 23 chr11 38141760 38142111 -112641442 + THE1C LTR MaLR 1 375 0 1438 188 28 35 chr11 38142111 38142320 -112641233 + AluJb SINE Alu 113 321 0 352 324 72 14 chr11 38142375 38142514 -112641039 - MIR SINE MIR -109 153 7 1754 232 96 8 chr11 38142547 38143047 -112640506 - L1ME2 LINE L1 -36 6197 5654 442 211 0 53 chr11 38143050 38143145 -112640408 + MER21B LTR ERV1 1 90 -773 2796 224 71 52 chr11 38143152 38143974 -112639579 + MER21B LTR ERV1 23 841 -22 2177 209 88 104 chr11 38143997 38144446 -112639107 - L1ME2 LINE L1 -585 5648 5193 327 49 0 0 chr11 38144446 38144487 -112639066 + (TG)n Simple_repeat Simple_repeat 2 42 0 2043 118 11 0 chr11 38144487 38144766 -112638787 - AluSg SINE Alu -28 282 1 2177 209 88 104 chr11 38144766 38145116 -112638437 - L1ME2 LINE L1 -1039 5194 4840 787 148 0 0 chr11 38145116 38145264 -112638289 + AluSg/x SINE Alu 170 317 0 2177 209 88 104 chr11 38145264 38145672 -112637881 - L1ME2 LINE L1 -1393 4840 4347 1915 264 86 13 chr11 38145672 38146419 -112637134 - L1ME2 LINE L1 -2320 3895 3095 5593 146 20 40 chr11 38146445 38147038 -112636515 - L1MA7 LINE L1 -9 6282 5679 2357 97 3 0 chr11 38147038 38147348 -112636205 - AluY SINE Alu 0 311 1 5593 146 20 40 chr11 38147348 38147579 -112635974 - L1MA7 LINE L1 -612 5679 5445 375 23 0 0 chr11 38147589 38147633 -112635920 + (TG)n Simple_repeat Simple_repeat 1 44 0 2171 113 3 0 chr11 38147633 38147913 -112635640 - AluSx SINE Alu -28 284 1 5593 146 20 40 chr11 38147913 38148588 -112634965 - L1MA7 LINE L1 -846 5445 4810 4415 269 52 56 chr11 38148579 38148818 -112634735 - L1ME2 LINE L1 -3108 3107 2869 * 2372 97 0 7 chr11 38148818 38149128 -112634425 + AluSg1 SINE Alu 1 308 -1 4415 269 52 56 chr11 38149128 38149321 -112634232 - L1ME2 LINE L1 -3346 2869 2677 2117 125 3 7 chr11 38149321 38149625 -112633928 + AluSx SINE Alu 1 303 -9 4415 269 52 56 chr11 38149625 38152020 -112631533 - L1ME2 LINE L1 -3538 2677 334 2273 97 0 3 chr11 38152020 38152319 -112631234 + AluSg SINE Alu 1 298 -12 4415 269 52 56 chr11 38152319 38152494 -112631059 - L1ME2 LINE L1 -5881 334 160 1876 130 114 19 chr11 38154175 38154483 -112629070 - MER1B DNA MER1_type 0 337 1 1385 169 142 15 chr11 38154558 38154825 -112628728 - AluJo SINE Alu 0 302 2 327 317 104 20 chr11 38154883 38155132 -112628421 + L2 LINE L2 2812 3081 -191 348 218 39 0 chr11 38155170 38155248 -112628305 - L2 LINE L2 -2 3270 3190 259 359 82 13 chr11 38155352 38155511 -112628042 + L2 LINE L2 3138 3307 -6 1721 210 161 20 chr11 38155751 38156242 -112627311 + MLT1F1 LTR MaLR 8 567 0 1749 190 8 37 chr11 38156372 38156697 -112626856 + MLT1A1 LTR MaLR 12 328 -37 2211 148 92 56 chr11 38156697 38157108 -112626445 + MSTB LTR MaLR 1 426 0 1749 190 8 37 chr11 38157108 38157134 -112626419 + MLT1A1 LTR MaLR 328 353 -12 745 181 47 7 chr11 38157277 38157426 -112626127 - MIR SINE MIR -18 244 90 371 286 91 23 chr11 38157464 38157685 -112625868 - MIR SINE MIR -20 242 4 243 287 46 11 chr11 38158452 38158539 -112625014 - MER5A DNA MER1_type -9 180 91 2326 82 16 10 chr11 38158555 38158860 -112624693 - AluY SINE Alu -4 307 1 577 161 0 0 chr11 38159239 38159326 -112624227 + AluSg/x SINE Alu 213 299 -10 194 259 19 0 chr11 38159425 38159479 -112624074 + L2 LINE L2 2996 3050 -222 2973 104 41 2 chr11 38159561 38159973 -112623580 + MSTA LTR MaLR 1 428 0 646 321 124 37 chr11 38160043 38160569 -112622984 - L2 LINE L2 0 3313 2743 355 224 105 81 chr11 38160652 38160862 -112622691 - LTR33 LTR ERVL -270 251 37 1325 259 73 59 chr11 38160969 38161489 -112622064 + L1MC4a LINE L1 1944 2455 -3760 1798 178 7 3 chr11 38161489 38161781 -112621772 - AluJo SINE Alu -16 296 4 1325 259 73 59 chr11 38161781 38161895 -112621658 + L1MC4a LINE L1 2455 2566 -3649 1949 168 7 0 chr11 38161895 38162205 -112621348 - AluJb SINE Alu 0 312 1 1325 259 73 59 chr11 38162205 38162567 -112620986 + L1MC4a LINE L1 2566 2919 -3296 1159 246 71 55 chr11 38162548 38163110 -112620443 + L1MC4a LINE L1 4525 5095 -1120 * 22 0 0 0 chr11 38163121 38163143 -112620410 + AT_rich Low_complexity Low_complexity 1 22 0 2182 91 3 14 chr11 38163146 38163442 -112620111 + AluY SINE Alu 1 293 -18 25 51 0 0 chr11 38163486 38163525 -112620028 + AT_rich Low_complexity Low_complexity 1 39 0 4153 242 101 72 chr11 38163553 38163879 -112619674 + L1MC4a LINE L1 5084 5399 -836 1911 148 30 3 chr11 38163879 38164183 -112619370 + AluSx SINE Alu 1 312 0 4153 242 101 72 chr11 38164183 38166176 -112617377 + L1MC4a LINE L1 5399 5994 -241 1595 177 57 114 chr11 38166167 38166747 -112616806 + L1ME1 LINE L1 5473 6085 -81 * 2263 160 18 3 chr11 38166747 38167079 -112616474 - MER1B DNA MER1_type 0 337 1 1595 177 57 114 chr11 38167079 38167140 -112616413 + L1ME1 LINE L1 6085 5993 -173 2333 92 3 3 chr11 38167140 38167446 -112616107 + AluY SINE Alu 1 306 -5 1595 177 57 114 chr11 38167446 38167594 -112615959 + L1ME1 LINE L1 5992 6147 -19 1514 200 104 11 chr11 38167684 38168063 -112615490 + L1MC4a LINE L1 6111 6242 0 * 1644 241 86 19 chr11 38168059 38168824 -112614729 + L1ME3 LINE L1 5152 6024 -138 300 174 0 0 chr11 38168828 38168874 -112614679 + L1ME3A LINE L1 6070 6115 -55 1394 287 79 27 chr11 38170059 38170644 -112612909 - MLT1L LTR MaLR 0 615 1 1750 147 17 31 chr11 38170735 38171027 -112612526 - AluJo SINE Alu -24 288 1 227 196 39 0 chr11 38171559 38171610 -112611943 + MLT1K LTR MaLR 532 584 -4 2101 117 3 0 chr11 38172023 38172313 -112611240 + AluSx SINE Alu 1 291 -21 327 49 0 0 chr11 38172315 38172356 -112611197 + (TG)n Simple_repeat Simple_repeat 2 42 0 313 294 108 0 chr11 38172369 38172471 -112611082 - MIR SINE MIR -119 143 31 382 169 15 0 chr11 38174115 38174177 -112609376 - MER20 DNA MER1_type 0 219 157 2149 154 76 21 chr11 38174177 38174236 -112609317 - MLT2A2 LTR ERVL 0 554 500 2287 117 0 3 chr11 38174236 38174545 -112609008 - AluY SINE Alu 0 311 4 2149 154 76 21 chr11 38174545 38174990 -112608563 - MLT2A2 LTR ERVL -54 500 1 764 134 148 28 chr11 38174992 38175134 -112608419 - MER20 DNA MER1_type -60 159 1 29 28 0 0 chr11 38175750 38175786 -112607767 + AT_rich Low_complexity Low_complexity 1 36 0 2131 107 14 3 chr11 38175929 38176219 -112607334 + AluSp SINE Alu 1 293 -20 306 243 29 39 chr11 38176288 38176391 -112607162 - L1ME4a LINE L1 -54 6067 5966 580 312 45 13 chr11 38176425 38176701 -112606852 - L1ME4a LINE L1 -330 5791 5542 2039 82 0 30 chr11 38177042 38177310 -112606243 - AluSg SINE Alu -15 295 36 1947 163 3 0 chr11 38177671 38177978 -112605575 - AluSx SINE Alu -4 308 1 465 281 43 30 chr11 38178799 38178963 -112604590 - MIR SINE MIR -38 224 59 2335 107 0 0 chr11 38179088 38179388 -112604165 - AluSc SINE Alu -9 300 1 1511 141 79 109 chr11 38180049 38180353 -112603200 + AluJb SINE Alu 3 297 -5 805 207 47 12 chr11 38180353 38180522 -112603031 - MER5A DNA MER1_type -14 175 1 624 279 31 6 chr11 38180544 38180705 -112602848 + MER5B DNA MER1_type 12 176 -2 684 286 6 11 chr11 38180713 38180895 -112602658 + MLT1J2 LTR MaLR 269 449 -1 640 295 141 36 chr11 38182002 38182508 -112601045 - MLT1K LTR MaLR -17 598 5 954 249 13 0 chr11 38183553 38183778 -112599775 + MIR SINE MIR 35 262 0 503 226 24 67 chr11 38184193 38184345 -112599208 + LTR37A LTR ERV1 18 162 -264 1895 203 136 80 chr11 38184345 38184582 -112598971 - MLT1E1 LTR MaLR 0 654 432 2164 118 0 13 chr11 38184582 38184897 -112598656 - AluY SINE Alu 0 311 1 1895 203 136 80 chr11 38184897 38185225 -112598328 - MLT1E1 LTR MaLR -222 432 57 2302 114 0 9 chr11 38185225 38185540 -112598013 + AluSx SINE Alu 1 312 0 290 148 222 0 chr11 38185573 38185627 -112597926 - MLT1E1 LTR MaLR -588 66 1 207 0 0 0 chr11 38185715 38185738 -112597815 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1558 185 20 33 chr11 38185744 38186047 -112597506 - AluJo SINE Alu -13 299 1 773 171 51 0 chr11 38186053 38186211 -112597342 + LTR37A LTR ERV1 255 420 -6 231 236 0 18 chr11 38186677 38186732 -112596821 + L2 LINE L2 3203 3256 -16 1630 155 39 10 chr11 38188159 38188468 -112595085 + MER33 DNA MER1_type 7 324 0 732 230 40 35 chr11 38188503 38188703 -112594850 - MER3 DNA MER1_type 0 209 9 1732 117 12 0 chr11 38188707 38188954 -112594599 + AluSg SINE Alu 56 305 -5 2301 100 0 3 chr11 38189005 38189305 -112594248 + AluSg SINE Alu 3 301 -9 2198 87 0 0 chr11 38190145 38190421 -112593132 + AluY SINE Alu 1 276 -35 281 136 0 0 chr11 38190421 38190465 -112593088 + AluY SINE Alu 252 295 -6 356 282 9 5 chr11 38190566 38190696 -112592857 - MIR SINE MIR -72 136 28 207 0 0 0 chr11 38191899 38191922 -112591631 + (T)n Simple_repeat Simple_repeat 1 23 0 2190 90 0 10 chr11 38191995 38192313 -112591240 + AluY SINE Alu 1 315 0 569 254 75 10 chr11 38192322 38192525 -112591028 - MIR SINE MIR -1 261 46 326 227 45 11 chr11 38192675 38192763 -112590790 - MLT1I LTR MaLR -4 405 315 496 278 23 15 chr11 38192773 38192898 -112590655 + MLT1G LTR MaLR 258 386 -204 2351 109 0 3 chr11 38192898 38193209 -112590344 - AluSq SINE Alu -3 310 1 1463 219 14 43 chr11 38193262 38193631 -112589922 + MLT1A2 LTR MaLR 1 358 -16 1533 159 3 65 chr11 38193637 38193946 -112589607 + AluJb SINE Alu 1 290 -22 638 210 112 0 chr11 38194011 38194154 -112589399 + MLT1A2 LTR MaLR 425 583 -7 460 224 96 0 chr11 38194195 38194320 -112589233 - L2 LINE L2 -1 3312 3176 1337 274 85 41 chr11 38194353 38194567 -112588986 - L1ME4a LINE L1 -3 6118 5915 2482 36 39 29 chr11 38194567 38194875 -112588678 - AluY SINE Alu 0 311 1 1337 274 85 41 chr11 38194875 38195317 -112588236 - L1ME4a LINE L1 -206 5915 5433 358 293 32 19 chr11 38195386 38195543 -112588010 + MIR SINE MIR 77 235 -27 302 129 52 164 chr11 38195760 38195876 -112587677 - MLT1H LTR MaLR -23 526 424 327 267 43 17 chr11 38196067 38196183 -112587370 - MLT1I LTR MaLR -272 137 19 247 97 0 0 chr11 38197665 38197696 -112585857 - Alu SINE Alu -246 55 25 1353 124 21 21 chr11 38197696 38197725 -112585828 + L1MA4A LINE L1 6067 6095 -208 2430 174 25 33 chr11 38197725 38198215 -112585338 + MER66B LTR ERV1 1 486 0 1353 124 21 21 chr11 38198215 38198419 -112585134 + L1MA4A LINE L1 6094 6300 -3 272 296 23 23 chr11 38199379 38199467 -112584086 + MIR SINE MIR 62 149 -113 3330 68 9 0 chr11 38199761 38200199 -112583354 + L1PB1 LINE L1 5709 6150 -1 550 268 115 14 chr11 38200224 38200433 -112583120 - MIR SINE MIR -24 238 9 2282 110 0 10 chr11 38200476 38200786 -112582767 + AluSq SINE Alu 1 307 -6 2186 122 0 28 chr11 38201935 38202256 -112581297 - AluSx SINE Alu 0 312 1 944 211 56 4 chr11 38202459 38202733 -112580820 - MER33 DNA MER1_type -41 283 1 422 259 42 48 chr11 38202902 38203068 -112580485 + L2 LINE L2 3148 3312 -1 376 316 65 24 chr11 38203086 38203254 -112580299 - MIR SINE MIR -74 188 14 372 43 0 0 chr11 38203295 38203341 -112580212 + (TG)n Simple_repeat Simple_repeat 1 46 0 381 192 0 0 chr11 38203841 38203914 -112579639 - MIR SINE MIR -6 256 184 2283 213 64 16 chr11 38203965 38204482 -112579071 - MLT1F LTR MaLR 0 542 1 748 253 5 5 chr11 38204513 38204707 -112578846 - MIR SINE MIR -1 261 68 2176 82 7 4 chr11 38205189 38205503 -112578050 + AluSg SINE Alu 1 315 0 480 188 31 0 chr11 38206290 38206386 -112577167 - L1ME1 LINE L1 -43 6123 6025 397 145 0 0 chr11 38206388 38206450 -112577103 - L1ME1 LINE L1 -392 5774 5713 504 260 153 0 chr11 38206755 38206905 -112576648 + MER5A DNA MER1_type 17 189 0 271 222 37 28 chr11 38207262 38207370 -112576183 + (CGGGG)n Simple_repeat Simple_repeat 3 111 0 26 36 0 0 chr11 38207475 38207503 -112576050 + GC_rich Low_complexity Low_complexity 1 28 0 36 23 0 0 chr11 38208105 38208148 -112575405 + GC_rich Low_complexity Low_complexity 1 43 0 201 121 0 0 chr11 38208417 38208450 -112575103 + (GGAGA)n Simple_repeat Simple_repeat 4 36 0 2016 112 51 10 chr11 38211161 38211457 -112572096 + AluSx SINE Alu 1 308 -4 297 0 0 0 chr11 38212371 38212404 -112571149 + (TG)n Simple_repeat Simple_repeat 1 33 0 659 207 141 35 chr11 38212696 38212894 -112570659 - MER20 DNA MER1_type 0 219 1 220 176 14 40 chr11 38214437 38214511 -112569042 + (TATATG)n Simple_repeat Simple_repeat 5 76 0 2264 95 3 10 chr11 38214735 38215039 -112568514 + AluSg SINE Alu 1 302 -8 1845 262 36 23 chr11 38215335 38215911 -112567642 - HsTC2 DNA Tc2 -1298 600 17 293 335 84 6 chr11 38216014 38216181 -112567372 - MIR SINE MIR -70 192 13 24 0 0 0 chr11 38217637 38217661 -112565892 + AT_rich Low_complexity Low_complexity 1 24 0 235 304 14 14 chr11 38218361 38218430 -112565123 + L2 LINE L2 3182 3250 -22 1880 117 0 0 chr11 38218930 38219197 -112564356 + AluSx SINE Alu 35 301 0 780 143 8 8 chr11 38220139 38220265 -112563288 + FLAM_A SINE Alu 1 126 -7 263 222 0 7 chr11 38220363 38220468 -112563085 + MER5A DNA MER1_type 14 189 0 450 283 113 30 chr11 38220471 38220661 -112562892 + MIR SINE MIR 12 226 -36 2338 74 3 55 chr11 38220661 38220986 -112562567 - AluY SINE Alu -3 308 1 450 283 113 30 chr11 38220986 38221025 -112562528 + MIR SINE MIR 226 260 -2 267 231 67 10 chr11 38221111 38221215 -112562338 - L1ME4a LINE L1 -169 5952 5843 2033 145 13 10 chr11 38221448 38221759 -112561794 + AluSx SINE Alu 1 312 0 563 294 55 29 chr11 38221810 38222048 -112561505 + L1ME4a LINE L1 5582 5825 -296 1021 192 35 10 chr11 38222055 38222258 -112561295 - MER3 DNA MER1_type 0 209 2 26 30 0 0 chr11 38223413 38223446 -112560107 + AT_rich Low_complexity Low_complexity 1 33 0 1823 155 0 48 chr11 38223573 38223883 -112559670 + AluSx SINE Alu 1 295 -17 728 270 88 72 chr11 38224066 38224518 -112559035 - L1ME3A LINE L1 -262 5902 5438 2199 94 3 3 chr11 38224518 38224827 -112558726 - AluSg1 SINE Alu 0 309 1 728 270 88 72 chr11 38224827 38224861 -112558692 - L1ME3A LINE L1 -726 5438 5406 438 324 71 13 chr11 38225267 38225492 -112558061 + MIR SINE MIR 15 252 -10 26 0 0 0 chr11 38225666 38225692 -112557861 + AT_rich Low_complexity Low_complexity 1 26 0 1371 62 11 0 chr11 38225692 38225869 -112557684 - L1MA2 LINE L1 -4 6300 6122 21 0 0 0 chr11 38227039 38227060 -112556493 + AT_rich Low_complexity Low_complexity 1 21 0 1903 189 62 46 chr11 38227117 38227571 -112555982 + LOR1b LTR ERV1 1 461 0 392 282 19 19 chr11 38228136 38228292 -112555261 - MIR SINE MIR -12 250 95 1905 156 7 7 chr11 38228641 38228936 -112554617 + AluJb SINE Alu 3 297 -15 2291 104 3 0 chr11 38230079 38230377 -112553176 + AluSg SINE Alu 1 299 -11 231 213 88 25 chr11 38234006 38234086 -112549467 - MIR SINE MIR -20 242 158 1664 238 57 9 chr11 38234086 38234523 -112549030 + MLT1C LTR MaLR 1 458 -9 374 219 0 0 chr11 38234551 38234633 -112548920 - MIR SINE MIR -111 151 70 1723 176 49 51 chr11 38235247 38235638 -112547915 + MLT1B LTR MaLR 1 390 0 2232 118 0 7 chr11 38236702 38237007 -112546546 + AluSx SINE Alu 1 303 -9 275 0 29 0 chr11 38237079 38237114 -112546439 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 1157 256 111 40 chr11 38237127 38237383 -112546170 - L1MC4a LINE L1 -751 5395 5539 1992 126 0 41 chr11 38237383 38237700 -112545853 - AluSx SINE Alu -4 308 5 1157 256 111 40 chr11 38237700 38238097 -112545456 - L1MC4a LINE L1 -606 5540 5172 1383 216 111 64 chr11 38238315 38238826 -112544727 - MLT1E LTR MaLR -11 582 3 286 242 88 11 chr11 38240564 38240655 -112542898 - L2 LINE L2 -31 3241 3144 216 67 0 0 chr11 38240771 38240801 -112542752 + (TG)n Simple_repeat Simple_repeat 2 31 0 1053 242 95 18 chr11 38241030 38241315 -112542238 - MLT1J LTR MaLR -98 413 107 1743 168 113 3 chr11 38241554 38241882 -112541671 - MLT1A1 LTR MaLR -1 364 1 234 214 276 0 chr11 38244065 38244163 -112539390 - MIR SINE MIR -21 241 117 21 0 0 0 chr11 38244647 38244668 -112538885 + AT_rich Low_complexity Low_complexity 1 21 0 525 274 51 6 chr11 38245186 38245361 -112538192 + MIR SINE MIR 14 196 -66 2128 165 38 65 chr11 38246006 38246480 -112537073 - MLT1C LTR MaLR -5 462 2 2306 118 0 0 chr11 38246782 38247087 -112536466 - AluSx SINE Alu -7 305 1 661 120 16 16 chr11 38247200 38247325 -112536228 + Charlie5 DNA MER1_type 2486 2610 -2 335 177 177 100 chr11 38247502 38247557 -112535996 + MLT1D LTR MaLR 48 97 -408 186 43 0 0 chr11 38247557 38247580 -112535973 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2174 80 29 7 chr11 38247583 38247858 -112535695 - AluSx SINE Alu -31 281 1 335 177 177 100 chr11 38247858 38247928 -112535625 + MLT1D LTR MaLR 98 187 -318 441 255 152 0 chr11 38248185 38248369 -112535184 - MIR SINE MIR -10 252 41 2381 89 7 0 chr11 38248560 38248863 -112534690 - AluSp SINE Alu -8 305 1 1412 178 56 24 chr11 38248865 38249152 -112534401 - AluJo SINE Alu -4 308 13 2832 78 0 22 chr11 38249479 38249849 -112533704 + THE1B LTR MaLR 3 364 0 427 281 111 59 chr11 38250406 38250712 -112532841 - MLT1I LTR MaLR 0 409 88 181 306 130 19 chr11 38250851 38250959 -112532594 + L2 LINE L2 3153 3272 0 5934 152 17 35 chr11 38251191 38251985 -112531568 - L1PA16 LINE L1 -9 6157 5350 1997 143 7 13 chr11 38251985 38252293 -112531260 - AluJb SINE Alu -6 306 1 5934 152 17 35 chr11 38252293 38252519 -112531034 - L1PA16 LINE L1 -816 5350 5122 2049 138 0 0 chr11 38252519 38252816 -112530737 - AluY SINE Alu -14 297 1 5934 152 17 35 chr11 38252816 38253866 -112529687 - L1PA16 LINE L1 -1044 5122 4123 215 313 89 47 chr11 38253959 38254117 -112529436 + MIR SINE MIR 34 205 -57 1946 186 36 43 chr11 38254117 38254359 -112529194 - MLT1C LTR MaLR -2 465 226 2061 107 31 24 chr11 38254359 38254649 -112528904 - AluSx SINE Alu -20 292 1 1946 186 36 43 chr11 38254649 38254874 -112528679 - MLT1C LTR MaLR -241 226 1 215 313 89 47 chr11 38254874 38254929 -112528624 + MIR SINE MIR 205 256 -6 336 24 0 0 chr11 38255797 38255838 -112527715 + (TG)n Simple_repeat Simple_repeat 2 42 0 2904 145 11 32 chr11 38256288 38256818 -112526735 + L1MB8 LINE L1 5659 6177 -1 243 282 38 84 chr11 38256981 38257112 -112526441 - MIR SINE MIR -59 149 25 543 144 189 0 chr11 38258069 38258159 -112525394 - Tigger1 DNA MER2_type -4 2414 2308 1070 72 0 0 chr11 38258161 38258299 -112525254 + AluY SINE Alu 173 310 -1 15251 127 14 3 chr11 38258299 38260583 -112522970 - Tigger1 DNA MER2_type -109 2309 1 260 290 58 36 chr11 38260879 38261017 -112522536 + MIR SINE MIR 78 218 -44 354 284 47 8 chr11 38261697 38261824 -112521729 - MIR SINE MIR -98 164 33 221 75 25 0 chr11 38262449 38262489 -112521064 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 334 348 9 0 chr11 38262897 38263012 -112520541 - L2 LINE L2 -2 3270 3155 231 247 0 65 chr11 38263014 38263091 -112520462 - L2 LINE L2 -1 3271 3200 443 330 58 15 chr11 38263850 38264109 -112519444 + L1MC4a LINE L1 5678 5949 -213 266 145 48 32 chr11 38264114 38264238 -112519315 + (TA)n Simple_repeat Simple_repeat 1 126 0 1271 32 0 6 chr11 38265136 38265292 -112518261 - L1PA4 LINE L1 -2 6153 5999 251 172 0 35 chr11 38265598 38265656 -112517897 - L1ME4a LINE L1 -56 6065 6010 315 0 0 0 chr11 38265692 38265727 -112517826 + (TG)n Simple_repeat Simple_repeat 1 35 0 374 217 63 28 chr11 38266017 38266160 -112517393 - L1ME4a LINE L1 -286 5835 5688 1918 128 179 16 chr11 38267637 38268005 -112515548 - MSTA LTR MaLR 0 428 1 9900 131 18 31 chr11 38268005 38269605 -112513948 - MSTA-int LTR MaLR 0 1580 3 1668 170 184 11 chr11 38269607 38269971 -112513582 - MSTA LTR MaLR 0 428 2 263 291 138 51 chr11 38270196 38270392 -112513161 + MIR SINE MIR 20 232 -30 441 265 96 41 chr11 38270495 38270714 -112512839 + MIR SINE MIR 12 242 -20 206 302 179 28 chr11 38271900 38272079 -112511474 + MIR SINE MIR 57 262 0 224 342 51 8 chr11 38274378 38274495 -112509058 + L2 LINE L2 2618 2739 -575 2261 112 3 0 chr11 38274743 38275038 -112508515 - AluSp SINE Alu -17 296 1 32 0 0 0 chr11 38275099 38275131 -112508422 + AT_rich Low_complexity Low_complexity 1 32 0 317 209 131 0 chr11 38275694 38275820 -112507733 + MIR SINE MIR 106 250 -12 4603 151 14 3 chr11 38276049 38276773 -112506780 - MER44D DNA MER2_type -1 604 1 3228 64 0 0 chr11 38277232 38277637 -112505916 - L1PA8 LINE L1 0 6172 5768 22 0 0 0 chr11 38278784 38278806 -112504747 + AT_rich Low_complexity Low_complexity 1 22 0 206 216 0 39 chr11 38279243 38279294 -112504259 + C-rich Low_complexity Low_complexity 3 51 0 721 254 44 4 chr11 38279433 38279661 -112503892 - L1ME3A LINE L1 -5 6165 5929 905 271 95 59 chr11 38280663 38280854 -112502699 - L1ME4a LINE L1 -158 5963 5780 8148 120 35 13 chr11 38280854 38281476 -112502077 - HSMAR2 DNA Mariner -1 1301 694 1921 115 49 11 chr11 38281476 38281762 -112501791 - AluSx SINE Alu -15 297 1 8148 120 35 13 chr11 38281762 38282411 -112501142 - HSMAR2 DNA Mariner -608 694 3 905 271 95 59 chr11 38282411 38282860 -112500693 - L1ME4a LINE L1 -341 5780 5300 24 53 0 0 chr11 38284190 38284228 -112499325 + AT_rich Low_complexity Low_complexity 1 38 0 346 286 197 63 chr11 38284719 38285562 -112497991 - L2 LINE L2 -528 2786 1831 1496 176 3 30 chr11 38285587 38285888 -112497665 - AluJb SINE Alu -19 293 1 276 258 30 0 chr11 38286507 38286599 -112496954 - MIR SINE MIR -47 161 64 202 283 172 0 chr11 38287373 38287472 -112496081 + MIR SINE MIR 33 148 -60 332 245 108 17 chr11 38287624 38287742 -112495811 - MIR3 SINE MIR -4 204 72 239 186 17 0 chr11 38288242 38288301 -112495252 + (TA)n Simple_repeat Simple_repeat 1 60 0 463 234 29 77 chr11 38288319 38288510 -112495043 - MIR SINE MIR -56 206 19 283 224 47 35 chr11 38289247 38289332 -112494221 - L1MC4 LINE L1 -30 8012 7927 2340 57 0 3 chr11 38289334 38289633 -112493920 - AluY SINE Alu -13 298 1 2240 105 0 0 chr11 38289719 38290023 -112493530 - AluSq SINE Alu -9 304 1 652 273 90 37 chr11 38290101 38290390 -112493163 - L1MD1 LINE L1 -278 5886 5614 4462 121 8 0 chr11 38290390 38291020 -112492533 + MER41B LTR ERV1 1 635 0 652 273 90 37 chr11 38291020 38291515 -112492038 - L1MD1 LINE L1 -550 5614 5060 219 239 0 0 chr11 38292136 38292182 -112491371 - MIR3 SINE MIR -3 205 160 305 273 68 0 chr11 38292199 38292287 -112491266 - L2 LINE L2 -1 3271 3178 324 270 110 10 chr11 38292425 38292525 -112491028 + MER58 DNA MER1_type 5 114 -227 * 1198 163 64 19 chr11 38292524 38292788 -112490765 + MER58 DNA MER1_type 2126 2401 -19 535 154 115 0 chr11 38292794 38292898 -112490655 + MIR SINE MIR 77 192 -70 2239 92 0 7 chr11 38292906 38293209 -112490344 + AluSc SINE Alu 1 301 -8 288 0 0 0 chr11 38294365 38294397 -112489156 + (TG)n Simple_repeat Simple_repeat 2 33 0 290 315 109 39 chr11 38295457 38295714 -112487839 - L2 LINE L2 -13 3259 2985 262 103 345 0 chr11 38295740 38295798 -112487755 + MADE1 DNA Mariner 3 80 0 2130 152 25 8 chr11 38295798 38296160 -112487393 - MLT1B LTR MaLR -22 368 1 395 317 154 32 chr11 38296247 38296446 -112487107 - L2 LINE L2 -457 2857 2684 1226 188 5 0 chr11 38296446 38296659 -112486894 - MER20 DNA MER1_type -1 218 5 395 317 154 32 chr11 38296659 38296771 -112486782 - L2 LINE L2 -630 2684 2508 2191 82 7 0 chr11 38296803 38297094 -112486459 - AluSq SINE Alu -20 293 1 364 282 68 18 chr11 38297695 38297858 -112485695 + MER117 DNA MER1_type 3 173 -24 341 314 168 34 chr11 38298080 38298402 -112485151 - L2 LINE L2 -530 2784 2420 222 352 40 24 chr11 38298674 38298799 -112484754 - L2 LINE L2 -213 3059 2933 237 296 56 14 chr11 38298982 38299053 -112484500 + L2 LINE L2 3193 3266 -6 213 342 139 38 chr11 38299441 38299599 -112483954 + MIR3 SINE MIR 34 207 -1 449 249 46 64 chr11 38299764 38299937 -112483616 - MIR SINE MIR -10 252 83 293 317 35 21 chr11 38300437 38300579 -112482974 - MIR SINE MIR -104 158 15 2042 116 3 3 chr11 38301240 38301534 -112482019 - AluSg SINE Alu -16 294 1 1418 164 7 37 chr11 38301857 38302126 -112481427 - AluJb SINE Alu -51 261 1 205 293 40 27 chr11 38302397 38302472 -112481081 + MIR SINE MIR 20 95 -113 2441 55 0 3 chr11 38302885 38303193 -112480360 - AluY SINE Alu -4 307 1 475 297 77 13 chr11 38303358 38303513 -112480040 + MIR SINE MIR 98 262 0 265 318 88 41 chr11 38304371 38304714 -112478839 - L1ME4a LINE L1 -217 5904 5546 26 64 0 0 chr11 38304790 38304837 -112478716 + AT_rich Low_complexity Low_complexity 1 47 0 355 272 88 41 chr11 38305131 38305278 -112478275 - MIR SINE MIR -15 247 94 1864 173 7 92 chr11 38306486 38306909 -112476644 + MLT1B LTR MaLR 3 389 -1 22 0 0 0 chr11 38306931 38306953 -112476600 + AT_rich Low_complexity Low_complexity 1 22 0 1797 169 0 0 chr11 38306953 38307243 -112476310 + AluSx SINE Alu 1 290 -22 1340 179 40 26 chr11 38307359 38307632 -112475921 + MLT1C LTR MaLR 1 277 -190 480 253 97 38 chr11 38308005 38308191 -112475362 + MIR SINE MIR 15 211 -51 984 161 21 16 chr11 38309267 38309453 -112474100 - MLT1C LTR MaLR -2 465 279 2512 74 15 87 chr11 38309484 38309673 -112473880 + THE1B LTR MaLR 1 202 -162 338 71 36 0 chr11 38309673 38309729 -112473824 - L1PB2 LINE L1 -4 6147 6090 3328 52 7 7 chr11 38309729 38310142 -112473411 - L1PA8 LINE L1 -5 6167 5749 2512 74 15 87 chr11 38310142 38310343 -112473210 + THE1B LTR MaLR 200 364 0 956 175 40 31 chr11 38310343 38310571 -112472982 - MLT1C LTR MaLR -186 281 52 28 0 0 0 chr11 38310811 38310839 -112472714 + AT_rich Low_complexity Low_complexity 1 28 0 396 284 45 7 chr11 38311048 38311203 -112472350 + Charlie8 DNA MER1_type 3 163 -2254 583 219 37 6 chr11 38311291 38311452 -112472101 + HsTC2 DNA Tc2 3 1898 0 537 270 190 5 chr11 38311579 38311790 -112471763 + MIR SINE MIR 9 258 -4 258 236 308 4 chr11 38311811 38311953 -112471600 + MIR SINE MIR 58 246 -16 1802 194 9 9 chr11 38314700 38315036 -112468517 - MLT1A1 LTR MaLR -29 336 1 999 229 48 0 chr11 38315256 38315487 -112468066 + MIR SINE MIR 15 256 -6 218 222 0 0 chr11 38315673 38315718 -112467835 + A-rich Low_complexity Low_complexity 130 174 0 359 301 38 38 chr11 38315850 38315983 -112467570 + MER5A DNA MER1_type 54 186 -3 238 173 19 0 chr11 38316390 38316442 -112467111 + L1ME4a LINE L1 5995 6047 -74 533 223 142 71 chr11 38316469 38316680 -112466873 + MIR SINE MIR 2 227 -35 203 362 0 14 chr11 38317314 38317383 -112466170 + L3 LINE CR1 1394 1461 -116 738 113 0 0 chr11 38318585 38318709 -112464844 + (TGGA)n Simple_repeat Simple_repeat 3 126 0 990 117 0 0 chr11 38318737 38318916 -112464637 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 1188 108 6 0 chr11 38319021 38319188 -112464365 - AluSg SINE Alu -142 168 1 646 281 100 0 chr11 38319219 38319429 -112464124 - MIR SINE MIR -30 232 2 444 215 203 19 chr11 38319774 38319932 -112463621 - MER5A DNA MER1_type 0 189 3 217 344 62 10 chr11 38319972 38320068 -112463485 - MER5A DNA MER1_type -22 167 67 315 295 23 23 chr11 38320363 38320492 -112463061 + L2 LINE L2 3167 3295 -18 598 214 65 126 chr11 38320549 38320658 -112462895 - MIR SINE MIR -47 215 124 2326 86 0 0 chr11 38320658 38320960 -112462593 + AluY SINE Alu 1 302 -9 598 214 65 126 chr11 38320960 38321065 -112462488 - MIR SINE MIR -138 124 14 300 277 135 20 chr11 38321534 38321682 -112461871 + MIR SINE MIR 83 247 -15 2026 124 0 7 chr11 38321728 38322026 -112461527 - AluSx SINE Alu -16 296 1 598 305 28 6 chr11 38322597 38322774 -112460779 - MIR SINE MIR -47 215 35 254 192 0 19 chr11 38322905 38322957 -112460596 - MER20 DNA MER1_type -3 216 166 2181 168 15 32 chr11 38322959 38323116 -112460437 - LOR1b LTR ERV1 0 461 303 2834 70 13 11 chr11 38323116 38323489 -112460064 + THE1C LTR MaLR 1 374 -1 2181 168 15 32 chr11 38323489 38323736 -112459817 - LOR1b LTR ERV1 -158 303 64 637 147 0 10 chr11 38323896 38323998 -112459555 - L1MB7 LINE L1 -84 6100 6000 184 323 136 15 chr11 38324157 38324355 -112459198 + L2 LINE L2 1851 2072 -1242 553 261 51 7 chr11 38324508 38324646 -112458907 + MIR SINE MIR 23 166 -96 613 300 71 76 chr11 38325255 38325353 -112458200 + L2 LINE L2 2444 2541 -773 905 221 53 0 chr11 38325353 38325561 -112457992 + MER20 DNA MER1_type 1 219 0 613 300 71 76 chr11 38325561 38325744 -112457809 + L2 LINE L2 2541 2725 -589 1548 196 31 0 chr11 38325744 38326035 -112457518 + AluJb SINE Alu 1 300 -12 613 300 71 76 chr11 38326035 38326132 -112457421 + L2 LINE L2 2725 2821 -493 2050 194 16 7 chr11 38326237 38326674 -112456879 - L1M4 LINE L1 -1445 4701 4261 1786 113 3 78 chr11 38326674 38326993 -112456560 - AluJb SINE Alu -17 295 1 2590 203 73 17 chr11 38327015 38327704 -112455849 - L1M4 LINE L1 -3092 3054 2328 301 211 18 0 chr11 38327722 38327779 -112455774 + MER5B DNA MER1_type 121 178 0 390 360 16 16 chr11 38329389 38329575 -112453978 + L2 LINE L2 2905 3090 -182 208 148 0 56 chr11 38329639 38329693 -112453860 + (TAA)n Simple_repeat Simple_repeat 2 52 0 203 244 26 13 chr11 38329737 38329815 -112453738 + (TATAA)n Simple_repeat Simple_repeat 5 83 0 643 313 15 0 chr11 38329831 38330026 -112453527 - MIR SINE MIR -27 235 38 1565 160 31 24 chr11 38330054 38330342 -112453211 - AluJb SINE Alu -22 290 1 557 360 15 0 chr11 38330691 38330888 -112452665 - MIR SINE MIR -15 247 48 2191 94 7 0 chr11 38330892 38331189 -112452364 - AluY SINE Alu -12 299 1 200 263 200 38 chr11 38332071 38332151 -112451402 + L2 LINE L2 2878 2970 -302 221 300 0 0 chr11 38333082 38333142 -112450411 + MER5A DNA MER1_type 108 167 -22 193 169 127 56 chr11 38333087 38333158 -112450395 - MER5A DNA MER1_type -101 88 13 * 279 304 202 16 chr11 38333744 38334001 -112449552 + L1ME4a LINE L1 5602 5906 -215 352 247 37 0 chr11 38334047 38334128 -112449425 - L2 LINE L2 -4 3309 3226 448 143 71 12 chr11 38334145 38334229 -112449324 + MER5A DNA MER1_type 13 101 -88 313 279 23 47 chr11 38334292 38334421 -112449132 + HAL1b LINE L1 1222 1347 -1 499 259 56 7 chr11 38334979 38335122 -112448431 + MIR3 SINE MIR 4 153 -55 381 301 208 6 chr11 38336289 38336462 -112447091 + MIR SINE MIR 51 258 -4 487 300 109 32 chr11 38336587 38337034 -112446519 - L2 LINE L2 -108 3205 2712 566 201 56 84 chr11 38337252 38337272 -112446281 - L1MD3 LINE L1 -447 7548 7529 2400 188 117 4 chr11 38337272 38337777 -112445776 + MER68 LTR ERV1 1 562 0 566 201 56 84 chr11 38337777 38338588 -112444965 - L1MD3 LINE L1 -466 7529 6697 438 20 0 0 chr11 38338588 38338639 -112444914 + (TCCA)n Simple_repeat Simple_repeat 2 52 0 566 201 56 84 chr11 38338639 38338768 -112444785 - L1MD3 LINE L1 -1298 6697 6566 2098 89 3 7 chr11 38338768 38339059 -112444494 - AluSg1 SINE Alu -19 290 1 566 201 56 84 chr11 38339059 38339700 -112443853 - L1MD3 LINE L1 -1429 6566 5910 4646 166 95 11 chr11 38339706 38341064 -112442489 - MER52A LTR ERV1 0 1755 211 324 247 13 13 chr11 38341487 38341564 -112441989 - MER52A LTR ERV1 -1678 77 1 195 125 0 0 chr11 38341732 38341772 -112441781 + (ATG)n Simple_repeat Simple_repeat 2 41 0 572 287 108 27 chr11 38341779 38341903 -112441650 - MIR SINE MIR -1 261 148 1728 173 116 3 chr11 38341903 38342238 -112441315 - MER83C LTR ERV1 0 373 1 572 287 108 27 chr11 38342238 38342336 -112441217 - MIR SINE MIR -114 148 21 665 280 68 38 chr11 38342853 38342988 -112440565 + MIR SINE MIR 15 161 -101 3183 174 9 26 chr11 38342988 38343558 -112439995 - MER68 LTR ERV1 -2 560 1 665 280 68 38 chr11 38343558 38343658 -112439895 + MIR SINE MIR 161 257 -5 456 286 107 17 chr11 38344321 38344499 -112439054 - MIR SINE MIR -6 256 63 1875 145 3 0 chr11 38344600 38344890 -112438663 + AluJb SINE Alu 1 291 -21 1792 170 55 0 chr11 38345383 38345712 -112437841 - L1MC1 LINE L1 -4 6329 5983 331 287 64 11 chr11 38345741 38345835 -112437718 - L1ME4a LINE L1 -31 6090 5992 195 307 11 23 chr11 38345856 38345944 -112437609 + MIR SINE MIR 170 256 -6 414 0 0 0 chr11 38346109 38346155 -112437398 + (CA)n Simple_repeat Simple_repeat 2 47 0 1687 158 13 30 chr11 38346294 38346597 -112436956 - AluJb SINE Alu -14 298 1 655 195 8 16 chr11 38346709 38346837 -112436716 + FLAM_A SINE Alu 1 127 -6 854 212 74 17 chr11 38346871 38347127 -112436426 + L1MC5 LINE L1 6986 7252 -735 4010 207 80 40 chr11 38347207 38347975 -112435578 - L1MDa LINE L1 -4252 2288 1451 1781 138 3 48 chr11 38347975 38348286 -112435267 - AluJb SINE Alu -10 302 6 4010 207 80 40 chr11 38348286 38348748 -112434805 - L1MDa LINE L1 -5089 1451 1009 1525 223 123 14 chr11 38349312 38349904 -112433649 + L1MC5 LINE L1 7261 7917 -44 1525 178 0 26 chr11 38350088 38350391 -112433162 - AluJb SINE Alu -17 295 1 762 178 0 0 chr11 38350408 38350526 -112433027 - FLAM_C SINE Alu -24 119 2 442 258 238 33 chr11 38351238 38351478 -112432075 + L2 LINE L2 3022 3310 -3 856 263 94 5 chr11 38351558 38351782 -112431771 - MIR SINE MIR -8 254 11 973 175 6 0 chr11 38351804 38351964 -112431589 - FRAM SINE Alu -5 161 1 1482 209 3 40 chr11 38351986 38352283 -112431270 - AluJo SINE Alu -15 287 2 844 291 73 4 chr11 38352291 38352525 -112431028 - MIR SINE MIR -1 261 12 183 42 0 0 chr11 38353850 38353874 -112429679 + (TCCC)n Simple_repeat Simple_repeat 3 26 0 661 168 98 60 chr11 38354642 38354670 -112428883 - L1MA4A LINE L1 -155 6150 6125 418 179 51 17 chr11 38354670 38354787 -112428766 - L1MA4A LINE L1 0 6303 6183 661 168 98 60 chr11 38354787 38354974 -112428579 - L1MA4A LINE L1 -180 6125 5932 23 0 0 0 chr11 38355676 38355699 -112427854 + AT_rich Low_complexity Low_complexity 1 23 0 2879 183 40 40 chr11 38355916 38356539 -112427014 - LTR27 LTR ERV1 -2 634 12 690 250 16 37 chr11 38356660 38356848 -112426705 + MER58A DNA MER1_type 38 221 -3 404 299 70 59 chr11 38356851 38356904 -112426649 - L1ME LINE L1 -368 5796 5745 1945 130 0 3 chr11 38356904 38357209 -112426344 - AluSx SINE Alu 0 304 1 404 299 70 59 chr11 38357209 38357284 -112426269 - L1ME LINE L1 -419 5745 5672 1458 185 25 3 chr11 38357284 38357570 -112425983 + AluJo SINE Alu 9 300 -12 404 299 70 59 chr11 38357570 38357745 -112425808 - L1ME LINE L1 -492 5672 5488 302 251 112 11 chr11 38357787 38357966 -112425587 - L1ME LINE L1 -753 5393 5197 653 249 17 33 chr11 38359035 38359216 -112424337 + MER45A DNA AcHobo 1 178 0 407 147 107 0 chr11 38359219 38359294 -112424259 - MIR SINE MIR -126 136 54 454 172 73 81 chr11 38359924 38360196 -112423357 + L1MA4A LINE L1 5950 6280 -23 248 317 19 43 chr11 38361358 38361519 -112422034 - L1ME LINE L1 -633 5488 5332 419 311 93 0 chr11 38361759 38361920 -112421633 - L1ME1 LINE L1 -230 5936 5761 514 229 49 8 chr11 38362324 38362446 -112421107 + MER5A DNA MER1_type 1 127 -62 521 211 31 39 chr11 38362447 38362575 -112420978 + MER5A DNA MER1_type 61 187 -2 2104 72 4 7 chr11 38362830 38363108 -112420445 - AluSc SINE Alu -32 277 1 2444 50 0 3 chr11 38364256 38364558 -112418995 - AluY SINE Alu -10 301 1 332 230 149 0 chr11 38365241 38365315 -112418238 + MLT1F1 LTR MaLR 1 85 -508 1521 132 13 9 chr11 38365333 38365603 -112417950 - L1MB2 LINE L1 -17 6172 5902 2334 56 0 10 chr11 38365607 38365909 -112417644 - AluY SINE Alu -12 299 1 1281 108 11 0 chr11 38366170 38366356 -112417197 - L1MB2 LINE L1 -287 5896 5709 1514 220 101 45 chr11 38366368 38366832 -112416721 + MLT1F1 LTR MaLR 78 567 0 598 308 39 5 chr11 38366944 38367152 -112416401 - MIR SINE MIR 0 262 48 306 0 0 0 chr11 38367576 38367610 -112415943 + (TG)n Simple_repeat Simple_repeat 1 34 0 231 36 0 0 chr11 38367609 38367637 -112415916 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 2825 150 9 13 chr11 38367784 38368245 -112415308 + MLT1C LTR MaLR 9 467 0 315 231 41 74 chr11 38369403 38369524 -112414029 + MLT1H LTR MaLR 431 547 -2 2243 104 16 0 chr11 38369554 38369862 -112413691 - AluSq SINE Alu 0 313 1 2034 154 52 0 chr11 38369885 38370215 -112413338 + MER7A DNA MER2_type 2 346 0 613 186 11 85 chr11 38370270 38370395 -112413158 - MER104 DNA Tc2 -1718 180 72 2420 56 0 31 chr11 38370395 38370715 -112412838 + AluY SINE Alu 1 310 -1 613 186 11 85 chr11 38370715 38370777 -112412776 - MER104 DNA Tc2 -1826 72 7 393 306 63 81 chr11 38370781 38371114 -112412439 - L2 LINE L2 -71 3201 2875 973 394 116 16 chr11 38371164 38371552 -112412001 - MER31B LTR ERV1 -39 427 1 199 294 78 114 chr11 38372960 38373320 -112410233 - L2 LINE L2 0 3272 2926 2131 103 3 0 chr11 38373921 38374223 -112409330 - AluSg1 SINE Alu -6 303 1 398 261 0 106 chr11 38375771 38375951 -112407602 - MLT1J LTR MaLR -260 251 91 354 225 0 50 chr11 38375954 38375999 -112407554 - MLT1G LTR MaLR -417 173 132 2148 120 0 0 chr11 38375999 38376300 -112407253 - AluSx SINE Alu -11 301 1 354 225 0 50 chr11 38376300 38376334 -112407219 - MLT1G LTR MaLR -458 132 98 1007 257 99 27 chr11 38377174 38377680 -112405873 + MLT1G LTR MaLR 1 589 -1 227 220 20 0 chr11 38378112 38378162 -112405391 - L2 LINE L2 -31 3241 3191 394 204 129 0 chr11 38378289 38378382 -112405171 + MIR SINE MIR 18 122 -140 34 0 0 0 chr11 38378994 38379028 -112404525 + AT_rich Low_complexity Low_complexity 1 34 0 2042 101 3 52 chr11 38379157 38379484 -112404069 - AluSx SINE Alu -1 311 1 350 276 82 35 chr11 38380357 38380527 -112403026 + MER20 DNA MER1_type 35 212 -7 493 312 0 14 chr11 38380532 38380673 -112402880 - MIR3 SINE MIR -51 157 19 243 88 0 0 chr11 38380839 38380873 -112402680 + (GA)n Simple_repeat Simple_repeat 1 34 0 1473 184 27 36 chr11 38380992 38381323 -112402230 - L1MB8 LINE L1 0 6178 5851 977 102 32 91 chr11 38381328 38381514 -112402039 + MER30B DNA MER1_type 1 175 -15 2486 170 28 36 chr11 38381550 38382444 -112401109 - L1MB8 LINE L1 -433 5745 4861 301 238 16 0 chr11 38382745 38382808 -112400745 - MIR SINE MIR -19 243 180 559 256 36 0 chr11 38382874 38383011 -112400542 - MIR SINE MIR -89 173 32 1854 185 47 9 chr11 38383048 38383389 -112400164 + MLT1A1 LTR MaLR 1 354 -11 208 286 171 0 chr11 38383398 38383468 -112400085 + L2 LINE L2 3224 3305 -8 620 234 122 45 chr11 38384590 38384812 -112398741 - MIR SINE MIR -15 247 9 394 237 114 23 chr11 38385075 38385206 -112398347 + MIR SINE MIR 107 249 -13 276 285 108 15 chr11 38385253 38385383 -112398170 - L2 LINE L2 -12 3301 3160 786 168 0 42 chr11 38385428 38385571 -112397982 + FLAM_C SINE Alu 2 138 -5 1616 153 0 52 chr11 38385591 38385879 -112397674 + AluJo SINE Alu 12 310 0 235 0 0 0 chr11 38385879 38385905 -112397648 + (TAA)n Simple_repeat Simple_repeat 2 180 0 345 276 21 55 chr11 38386189 38386334 -112397219 - MLT1H LTR MaLR -381 168 29 583 221 67 13 chr11 38387026 38387175 -112396378 - MIR SINE MIR -27 235 79 434 327 132 33 chr11 38387247 38387371 -112396182 + L2 LINE L2 2752 2862 -410 1869 118 0 0 chr11 38387371 38387641 -112395912 - AluSx SINE Alu -1 311 42 434 327 132 33 chr11 38387641 38387932 -112395621 + L2 LINE L2 2862 3222 -50 749 235 131 23 chr11 38387939 38388160 -112395393 + MIR SINE MIR 8 252 -10 230 243 108 27 chr11 38388159 38388233 -112395320 + L2 LINE L2 3234 3313 0 * 23 33 0 0 chr11 38389907 38389937 -112393616 + AT_rich Low_complexity Low_complexity 1 30 0 501 242 85 18 chr11 38390080 38390245 -112393308 + MIR SINE MIR 80 255 -7 368 226 212 7 chr11 38390357 38390494 -112393059 - MIR SINE MIR -25 237 73 201 74 0 0 chr11 38390805 38390832 -112392721 + (TA)n Simple_repeat Simple_repeat 1 27 0 1940 164 0 0 chr11 38391257 38391569 -112391984 + AluSx SINE Alu 1 312 0 277 326 126 19 chr11 38391571 38391786 -112391767 - L2 LINE L2 -619 2695 2458 764 273 130 28 chr11 38392431 38392753 -112390800 + L2 LINE L2 2955 3309 -4 288 252 130 23 chr11 38392888 38393019 -112390534 - L2 LINE L2 -220 3052 2908 329 278 57 91 chr11 38393371 38393580 -112389973 - MIR SINE MIR -37 225 24 477 167 33 0 chr11 38394283 38394373 -112389180 - L1MB3 LINE L1 -7 6176 6084 726 235 18 18 chr11 38395116 38395286 -112388267 - MIR SINE MIR -21 241 72 496 245 82 65 chr11 38395518 38395763 -112387790 + MIR SINE MIR 4 252 -10 245 135 0 58 chr11 38395889 38395941 -112387612 - Alu SINE Alu 0 133 85 1005 150 59 59 chr11 38395941 38396034 -112387519 - AluJo SINE Alu -92 220 128 465 19 0 0 chr11 38396034 38396088 -112387465 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 1005 150 59 59 chr11 38396088 38396214 -112387339 - AluJo SINE Alu -183 129 1 2200 63 47 13 chr11 38396227 38396527 -112387026 - AluY SINE Alu -1 310 1 244 254 18 0 chr11 38396661 38396716 -112386837 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 2215 102 3 0 chr11 38398317 38398622 -112384931 + AluSx SINE Alu 1 306 -6 499 285 101 50 chr11 38398910 38399041 -112384512 - MIR SINE MIR -19 243 99 2475 129 53 26 chr11 38399041 38399387 -112384166 + MSTA LTR MaLR 1 361 -67 1935 144 14 0 chr11 38399387 38399679 -112383874 - AluSx SINE Alu -16 296 1 2475 129 53 26 chr11 38399679 38399749 -112383804 + MSTA LTR MaLR 361 428 0 499 285 101 50 chr11 38399749 38399796 -112383757 - MIR SINE MIR -163 99 56 698 251 130 13 chr11 38400829 38401060 -112382493 + MIR SINE MIR 5 262 0 738 241 98 6 chr11 38401784 38401958 -112381595 - MER20 DNA MER1_type 0 219 30 364 235 235 17 chr11 38402222 38402341 -112381212 - MIR SINE MIR -46 216 72 251 312 136 8 chr11 38402998 38403123 -112380430 + L1MC/D LINE L1 5668 5808 -2000 1798 137 29 0 chr11 38403130 38403408 -112380145 - AluJb SINE Alu -25 287 2 402 21 0 0 chr11 38403678 38403725 -112379828 + (TC)n Simple_repeat Simple_repeat 1 47 0 443 336 49 22 chr11 38405378 38405601 -112377952 - Charlie8 DNA MER1_type -2169 248 20 547 271 119 5 chr11 38405696 38405906 -112377647 - MIR SINE MIR -4 258 25 1010 178 10 59 chr11 38406298 38406590 -112376963 - MLT1B LTR MaLR 0 390 51 5982 73 21 6 chr11 38406590 38407441 -112376112 + SVA Other Other 3 866 -520 1192 39 5 29 chr11 38407456 38407663 -112375890 + SVA Other Other 665 866 -520 928 102 12 74 chr11 38407680 38407936 -112375617 + SVA Other Other 549 788 -598 6277 38 12 3 chr11 38408083 38408827 -112374726 + SVA Other Other 635 1385 -1 359 148 0 16 chr11 38408827 38408888 -112374665 - MLT1B LTR MaLR -330 60 1 1722 184 26 113 chr11 38409278 38409576 -112373977 - MLT1C LTR MaLR 0 467 145 240 35 0 0 chr11 38409576 38409605 -112373948 + (TTTTA)n Simple_repeat Simple_repeat 4 32 0 1682 174 7 0 chr11 38409611 38409893 -112373660 - AluSx SINE Alu -28 284 1 1722 184 26 113 chr11 38409893 38409905 -112373648 - MLT1C LTR MaLR -327 140 129 2498 67 0 3 chr11 38409905 38410217 -112373336 - AluY SINE Alu 0 311 1 1722 184 26 113 chr11 38410217 38410403 -112373150 - MLT1C LTR MaLR -338 129 7 2157 109 6 0 chr11 38410658 38410969 -112372584 - AluSq SINE Alu 0 313 1 247 306 131 79 chr11 38411772 38412001 -112371552 - L2 LINE L2 0 3272 3032 1681 171 0 10 chr11 38413048 38413346 -112370207 + AluJo SINE Alu 4 298 -14 1680 89 0 8 chr11 38413348 38413583 -112369970 + AluY SINE Alu 78 310 -1 185 337 112 0 chr11 38413868 38413966 -112369587 + L2 LINE L2 2918 3026 -246 213 250 0 0 chr11 38414126 38414166 -112369387 - MER91 DNA MER1_type -25 115 76 481 281 121 21 chr11 38414185 38414389 -112369164 - MIR SINE MIR -34 228 4 571 249 41 86 chr11 38415088 38415285 -112368268 - MIR3 SINE MIR -1 207 20 958 208 11 0 chr11 38415534 38415717 -112367836 + MER68 LTR ERV1 376 560 -2 322 282 99 14 chr11 38415806 38415948 -112367605 + MIR SINE MIR 30 183 -79 246 279 192 0 chr11 38415978 38416082 -112367471 + L2 LINE L2 3186 3309 -4 282 293 50 57 chr11 38416819 38416959 -112366594 + MIR3 SINE MIR 29 167 -41 299 250 226 0 chr11 38417274 38417398 -112366155 - MER103 DNA DNA -7 159 8 739 243 32 26 chr11 38418308 38418497 -112365056 + MIR SINE MIR 45 234 -28 252 237 66 13 chr11 38418527 38418603 -112364950 + L2 LINE L2 3188 3267 -5 344 167 0 50 chr11 38418811 38418871 -112364682 + MER5B DNA MER1_type 2 58 -120 946 284 42 85 chr11 38421092 38421539 -112362014 + L2 LINE L2 2886 3313 0 1345 124 81 15 chr11 38421588 38421847 -112361706 - L1MA6 LINE L1 0 6300 6025 1504 190 3 7 chr11 38421985 38422280 -112361273 + AluJb SINE Alu 1 294 -18 1480 146 37 48 chr11 38422282 38422576 -112360977 + AluJb SINE Alu 1 291 -21 245 330 41 10 chr11 38423500 38423597 -112359956 - MIR SINE MIR -67 141 42 2193 82 0 0 chr11 38423613 38423894 -112359659 - AluSq SINE Alu -32 281 1 389 278 33 20 chr11 38423998 38424149 -112359404 - MIR SINE MIR -4 258 106 241 259 0 12 chr11 38424235 38424316 -112359237 + (TA)n Simple_repeat Simple_repeat 2 81 0 229 175 0 25 chr11 38424321 38424361 -112359192 - L2 LINE L2 -82 3231 3193 279 0 0 0 chr11 38424375 38424406 -112359147 + (TGGA)n Simple_repeat Simple_repeat 2 32 0 251 190 17 0 chr11 38426501 38426559 -112356994 + GA-rich Low_complexity Low_complexity 1 59 0 935 283 113 38 chr11 38427756 38428392 -112355161 - L1ME4a LINE L1 -6 6115 5432 441 125 0 31 chr11 38428741 38428837 -112354716 + (TCCC)n Simple_repeat Simple_repeat 1 93 0 595 242 176 0 chr11 38429532 38429685 -112353868 - MER5A DNA MER1_type 0 189 10 414 141 152 20 chr11 38429716 38429815 -112353738 + MLT1C LTR MaLR 6 117 -350 2061 162 63 33 chr11 38429821 38430217 -112353336 - MLT2D LTR ERVL -5 409 2 1285 189 37 109 chr11 38430217 38430595 -112352958 + MLT1C LTR MaLR 118 466 -1 270 81 0 0 chr11 38431275 38431312 -112352241 + (T)n Simple_repeat Simple_repeat 1 37 0 4170 125 20 20 chr11 38431949 38432653 -112350900 - L1MA4 LINE L1 -5 6295 5592 2590 116 0 5 chr11 38432664 38433034 -112350519 - L1PB1 LINE L1 -1 6866 6499 225 119 0 0 chr11 38433036 38433078 -112350475 + LTR66 LTR ERVL 398 439 -171 249 159 0 0 chr11 38433078 38433122 -112350431 + (TA)n Simple_repeat Simple_repeat 2 45 0 235 133 0 0 chr11 38433123 38433168 -112350385 - LTR66 LTR ERVL -172 438 394 9276 179 8 24 chr11 38433170 38433601 -112349952 - L1PB1 LINE L1 -361 6506 6069 2115 92 0 0 chr11 38433601 38433883 -112349670 - AluSc SINE Alu -11 298 17 9276 179 8 24 chr11 38433883 38435986 -112347567 - L1PB1 LINE L1 -798 6069 4008 4850 32 0 0 chr11 38435987 38436545 -112347008 - L1PA5 LINE L1 -1 6153 5596 6774 52 11 16 chr11 38436555 38437483 -112346070 + L1P2 LINE L1 4534 5461 -693 2405 84 7 3 chr11 38437483 38437793 -112345760 + AluY SINE Alu 1 311 0 6774 52 11 16 chr11 38437793 38437952 -112345601 + L1P2 LINE L1 5461 5619 -535 * 10667 132 41 11 chr11 38437938 38440586 -112342967 - L1PB1 LINE L1 -2837 4025 1292 876 109 159 0 chr11 38440591 38440729 -112342824 - L1PB1 LINE L1 -5705 1158 999 1296 109 0 0 chr11 38440744 38440937 -112342616 - L1PB1 LINE L1 -6670 193 1 189 290 48 97 chr11 38441913 38441973 -112341580 - MER5A DNA MER1_type -51 138 77 2240 123 0 0 chr11 38441973 38442265 -112341288 + AluSx SINE Alu 1 292 -20 189 290 48 97 chr11 38442265 38442349 -112341204 - MER5A DNA MER1_type -112 77 1 211 329 92 0 chr11 38442416 38442492 -112341061 + MIR SINE MIR 121 203 -59 1757 156 13 25 chr11 38442492 38442807 -112340746 + AluJo SINE Alu 1 311 -1 435 285 8 8 chr11 38443110 38443233 -112340320 - L2 LINE L2 -3 3310 3188 1182 243 53 57 chr11 38443279 38443802 -112339751 - L2 LINE L2 -455 2859 2339 417 258 107 21 chr11 38444121 38444333 -112339220 - MIR SINE MIR -26 236 18 264 161 0 0 chr11 38444657 38444719 -112338834 + CT-rich Low_complexity Low_complexity 2 63 0 272 327 19 0 chr11 38446389 38446496 -112337057 + MER5A DNA MER1_type 54 162 -27 1095 241 34 100 chr11 38446530 38446746 -112336807 - L1MEd LINE L1 -5025 1094 865 2278 110 7 0 chr11 38446746 38447047 -112336506 - AluSp SINE Alu -10 303 1 1095 241 34 100 chr11 38447047 38447452 -112336101 - L1MEd LINE L1 -5254 865 514 827 267 56 16 chr11 38448816 38449067 -112334486 + MIR SINE MIR 1 261 -1 413 204 43 0 chr11 38449561 38449654 -112333899 + L1ME2 LINE L1 6068 6164 0 210 281 12 12 chr11 38450076 38450158 -112333395 + (TA)n Simple_repeat Simple_repeat 1 82 0 1990 269 111 28 chr11 38450999 38451709 -112331844 + HAL1 LINE L1 2 770 -1737 372 121 190 43 chr11 38451729 38451845 -112331708 - L1MB7 LINE L1 0 6184 6046 452 216 14 68 chr11 38451869 38451945 -112331608 - L1MB7 LINE L1 -83 6101 6035 2335 109 7 0 chr11 38451945 38452249 -112331304 + AluSx SINE Alu 1 306 -6 452 216 14 68 chr11 38452249 38452320 -112331233 - L1MB7 LINE L1 -149 6035 5962 3210 42 0 0 chr11 38452320 38452699 -112330854 - L1PA5 LINE L1 0 6154 5776 421 141 22 87 chr11 38452699 38452791 -112330762 + HAL1 LINE L1 804 889 -1618 195 184 0 0 chr11 38452805 38452843 -112330710 + G-rich Low_complexity Low_complexity 1 38 0 1352 189 0 21 chr11 38453011 38453249 -112330304 + AluJo SINE Alu 58 290 -22 2843 244 138 51 chr11 38453261 38454003 -112329550 + HAL1 LINE L1 1107 1783 -724 1692 141 4 36 chr11 38454003 38454280 -112329273 + AluJo SINE Alu 11 278 -34 369 0 0 0 chr11 38454280 38454321 -112329232 + (TC)n Simple_repeat Simple_repeat 2 42 0 180 0 0 0 chr11 38454320 38454340 -112329213 + (TA)n Simple_repeat Simple_repeat 1 20 0 2843 244 138 51 chr11 38454321 38454339 -112329214 + HAL1 LINE L1 1783 1798 -709 234 91 0 0 chr11 38454339 38454372 -112329181 + (CA)n Simple_repeat Simple_repeat 2 34 0 2843 244 138 51 chr11 38454372 38454917 -112328636 + HAL1 LINE L1 1798 2507 0 667 262 0 18 chr11 38455591 38455755 -112327798 + MIR SINE MIR 8 168 -94 516 291 33 0 chr11 38455820 38456002 -112327551 + MIR SINE MIR 75 262 0 337 263 8 34 chr11 38456546 38456664 -112326889 + MIR SINE MIR 8 122 -140 207 231 0 39 chr11 38456677 38456729 -112326824 - MIR SINE MIR -94 168 119 303 331 41 0 chr11 38456915 38457077 -112326476 - MLT1J2 LTR MaLR -6 409 281 * 501 241 23 23 chr11 38457068 38457201 -112326352 - MLT1I LTR MaLR -276 133 1 246 363 22 30 chr11 38457797 38457932 -112325621 - L2 LINE L2 -1 3271 3138 458 305 72 47 chr11 38457940 38458176 -112325377 + MIR SINE MIR 13 254 -8 213 94 0 0 chr11 38458187 38458219 -112325334 + (CAT)n Simple_repeat Simple_repeat 2 33 0 327 315 144 0 chr11 38460386 38460532 -112323021 + MIR SINE MIR 2 168 -94 205 191 24 0 chr11 38460579 38460621 -112322932 + (CTG)n Simple_repeat Simple_repeat 1 43 0 1361 188 11 14 chr11 38460772 38461048 -112322505 + AluJo SINE Alu 1 275 -37 452 167 0 24 chr11 38461330 38461414 -112322139 + FRAM SINE Alu 71 152 -24 2386 80 3 0 chr11 38462253 38462555 -112320998 - AluY SINE Alu -8 303 1 228 67 0 0 chr11 38462922 38462952 -112320601 + (CA)n Simple_repeat Simple_repeat 2 31 0 1406 172 95 37 chr11 38463200 38463239 -112320314 - MLT1A2 LTR MaLR -6 368 333 2076 135 3 13 chr11 38463239 38463550 -112320003 + AluSx SINE Alu 1 308 -4 1406 172 95 37 chr11 38463550 38463858 -112319695 - MLT1A2 LTR MaLR -41 333 1 335 274 40 16 chr11 38464007 38464131 -112319422 + MIR SINE MIR 55 181 -81 2081 119 24 0 chr11 38465398 38465691 -112317862 - AluSq SINE Alu -12 301 2 195 286 18 0 chr11 38465856 38465912 -112317641 - MIR SINE MIR -155 107 51 601 219 19 113 chr11 38466231 38466294 -112317259 - MIR SINE MIR -10 252 185 1639 142 0 103 chr11 38466294 38466624 -112316929 - AluJo SINE Alu -6 296 1 601 219 19 113 chr11 38466624 38466816 -112316737 - MIR SINE MIR -77 185 21 220 213 0 0 chr11 38467667 38467714 -112315839 - MIR SINE MIR -128 134 88 2130 116 30 3 chr11 38467842 38468143 -112315410 - AluSq SINE Alu -4 309 1 2249 108 3 3 chr11 38470075 38470380 -112313173 - AluSg SINE Alu -5 305 1 726 244 105 66 chr11 38470408 38470740 -112312813 - MLT1F1 LTR MaLR -122 445 101 1199 200 96 4 chr11 38470744 38470984 -112312569 + AluJb SINE Alu 1 262 -50 203 296 25 0 chr11 38471174 38471255 -112312298 - L2 LINE L2 -468 2846 2764 785 171 21 88 chr11 38471412 38471605 -112311948 + L1MD3 LINE L1 6800 6979 -1016 931 241 51 83 chr11 38471607 38471981 -112311572 - MLT1A1 LTR MaLR 0 365 4 2459 208 149 31 chr11 38471988 38472708 -112310845 + L1MC4a LINE L1 6111 6182 -60 2538 79 0 0 chr11 38472708 38473012 -112310541 - AluSg SINE Alu -6 304 1 2459 208 149 31 chr11 38473012 38473082 -112310471 + L1MC4a LINE L1 6182 6242 0 21 0 0 0 chr11 38473415 38473436 -112310117 + AT_rich Low_complexity Low_complexity 1 21 0 191 228 18 0 chr11 38473520 38473577 -112309976 + L2 LINE L2 3215 3272 0 792 231 12 12 chr11 38474463 38474632 -112308921 - MER58A DNA MER1_type -36 188 20 486 361 37 11 chr11 38474685 38475016 -112308537 - L2 LINE L2 -499 2815 2431 456 70 0 0 chr11 38475865 38475922 -112307631 + AluJb SINE Alu 240 296 -16 331 223 18 0 chr11 38476381 38476493 -112307060 + CT-rich Low_complexity Low_complexity 5 118 0 380 253 0 0 chr11 38478029 38478124 -112305429 + MIR SINE MIR 45 139 -69 973 253 135 10 chr11 38478241 38478786 -112304767 - L2 LINE L2 -48 3265 2640 318 222 0 0 chr11 38479721 38479784 -112303769 - MER103 DNA DNA -44 122 60 768 260 27 14 chr11 38479793 38480012 -112303541 - MIR SINE MIR -1 261 40 318 289 11 0 chr11 38480304 38480394 -112303159 + MIR SINE MIR 26 116 -146 260 187 39 213 chr11 38480758 38480913 -112302640 + MIR SINE MIR 16 143 -119 2070 163 54 50 chr11 38480930 38481390 -112302163 - MLT1C LTR MaLR 0 467 6 524 238 10 2 chr11 38482122 38482251 -112301302 + L1MC/D LINE L1 5682 5811 -365 665 207 0 0 chr11 38482377 38482488 -112301065 + MER58A DNA MER1_type 8 118 0 410 165 0 93 chr11 38482488 38482563 -112300990 + MER58 DNA MER1_type 2355 2420 0 24 32 0 0 chr11 38482642 38482673 -112300880 + AT_rich Low_complexity Low_complexity 1 31 0 3012 200 54 97 chr11 38482706 38484258 -112299295 + L1ME1 LINE L1 4687 6161 -5 2045 108 3 67 chr11 38484418 38484732 -112298821 + AluSx SINE Alu 1 294 -18 749 183 15 0 chr11 38484874 38485005 -112298548 + FLAM_A SINE Alu 1 133 0 520 285 33 23 chr11 38485201 38485415 -112298138 - L1MC4a LINE L1 -1898 5910 5695 1809 151 3 50 chr11 38485420 38485737 -112297816 - AluJo SINE Alu -10 302 1 481 254 36 104 chr11 38485741 38485961 -112297592 - L1MC4a LINE L1 -2190 5618 5414 681 266 27 0 chr11 38486019 38486203 -112297350 - MER91B DNA MER1_type -1 189 1 1609 170 43 4 chr11 38486799 38487076 -112296477 + AluJo SINE Alu 1 288 -24 795 168 61 82 chr11 38486919 38487115 -112296438 + AluJb SINE Alu 121 312 0 637 86 7 139 chr11 38487269 38487420 -112296133 + L1MB4 LINE L1 6040 6170 -10 50 0 0 0 chr11 38487420 38487470 -112296083 + AT_rich Low_complexity Low_complexity 1 50 0 431 290 41 73 chr11 38487494 38487739 -112295814 - MIR SINE MIR -3 259 23 364 251 49 53 chr11 38488190 38488323 -112295230 + MIR SINE MIR 42 171 -66 530 118 0 0 chr11 38488358 38488434 -112295119 - L2 LINE L2 -14 3299 3224 523 289 28 33 chr11 38488932 38489112 -112294441 + MIR SINE MIR 4 182 -80 1889 115 18 4 chr11 38489141 38489449 -112294104 + AluSx SINE Alu 1 312 0 451 246 197 11 chr11 38489507 38489690 -112293863 - MIR SINE MIR -44 218 2 2391 186 24 14 chr11 38489861 38490361 -112293192 - L1MB7 LINE L1 0 6184 5680 248 254 0 0 chr11 38490935 38490990 -112292563 - MIR SINE MIR -50 212 158 230 204 0 37 chr11 38490994 38491048 -112292505 + L1MB8 LINE L1 6044 6095 -83 341 211 0 14 chr11 38491049 38491120 -112292433 - MIR SINE MIR -116 146 77 202 339 0 0 chr11 38491202 38491258 -112292295 + L2 LINE L2 3258 3313 0 898 296 4 8 chr11 38491737 38491987 -112291566 + MIR SINE MIR 2 250 -12 249 139 0 0 chr11 38494643 38494686 -112288867 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 26 74 0 0 chr11 38495018 38495072 -112288481 + AT_rich Low_complexity Low_complexity 1 54 0 2125 61 0 61 chr11 38496277 38496573 -112286980 - AluY SINE Alu -12 299 22 401 241 25 96 chr11 38496819 38497018 -112286535 - MLT1K LTR MaLR -3 585 401 755 232 33 50 chr11 38497996 38498237 -112285316 - MLT1J1 LTR MaLR -185 261 25 273 29 0 0 chr11 38498456 38498490 -112285063 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1619 179 0 0 chr11 38498490 38498770 -112284783 - AluJb SINE Alu -32 280 1 326 275 25 17 chr11 38498907 38499027 -112284526 + L2 LINE L2 2853 2973 -341 498 296 71 30 chr11 38499725 38499992 -112283561 - MLT2E LTR ERVL 0 628 351 374 270 113 0 chr11 38500039 38500154 -112283399 + LTR67 LTR ERVL 430 557 0 316 315 70 28 chr11 38500178 38500321 -112283232 + MIR3 SINE MIR 19 167 -41 2266 110 131 11 chr11 38500560 38500942 -112282611 + MSTA LTR MaLR 1 428 0 325 329 99 24 chr11 38501048 38501117 -112282436 - MIR SINE MIR 0 262 200 857 205 83 5 chr11 38501117 38501322 -112282231 + MER58A DNA MER1_type 1 221 -3 325 329 99 24 chr11 38501322 38501465 -112282088 - MIR SINE MIR -62 200 34 1471 151 59 46 chr11 38502162 38502466 -112281087 - AluJo SINE Alu 0 312 5 189 243 0 0 chr11 38502858 38502895 -112280658 + MIR SINE MIR 108 144 -118 917 225 29 32 chr11 38503486 38503743 -112279810 - MIR SINE MIR -6 256 2 325 263 20 50 chr11 38504548 38504647 -112278906 + MIR SINE MIR 16 111 -97 260 307 111 26 chr11 38504818 38504971 -112278582 - L2 LINE L2 -2 3270 3105 1028 276 122 35 chr11 38505015 38505476 -112278077 - MLT1J LTR MaLR -8 503 3 1257 274 125 22 chr11 38505653 38506116 -112277437 - LTR33A LTR ERVL -11 512 2 2287 193 88 4 chr11 38506304 38506770 -112276783 - MLT1D LTR MaLR 0 505 1 392 270 52 65 chr11 38507194 38507424 -112276129 - MLT1J LTR MaLR -175 336 110 387 272 10 10 chr11 38507785 38507888 -112275665 - MIR SINE MIR -86 176 74 1629 76 0 14 chr11 38508089 38508363 -112275190 + AluY SINE Alu 63 333 0 786 189 16 70 chr11 38508556 38508741 -112274812 - L2 LINE L2 -2 3311 3137 313 252 86 65 chr11 38509435 38509574 -112273979 - HAL1b LINE L1 -1198 150 9 1591 168 50 99 chr11 38510014 38510263 -112273290 - MLT1B LTR MaLR 0 390 167 1408 186 62 7 chr11 38510263 38510554 -112272999 - AluJo SINE Alu -5 307 1 1591 168 50 99 chr11 38510554 38510708 -112272845 - MLT1B LTR MaLR -223 167 7 744 241 54 35 chr11 38511416 38511619 -112271934 + MER63A DNA MER1_type 1 207 -3 281 281 0 0 chr11 38512347 38512404 -112271149 + L2 LINE L2 3162 3218 -54 1263 237 147 41 chr11 38512658 38513148 -112270405 + MLT1F LTR MaLR 1 542 0 294 212 61 98 chr11 38514325 38514457 -112269096 + MIR3 SINE MIR 14 140 -68 1202 117 0 11 chr11 38514508 38514687 -112268866 - MER96B DNA MER1_type? 0 417 241 656 323 11 35 chr11 38514829 38515089 -112268464 + MIR SINE MIR 1 254 -8 786 154 160 13 chr11 38515768 38515924 -112267629 - MER5A DNA MER1_type -4 185 7 766 252 81 40 chr11 38515928 38516150 -112267403 + MIR SINE MIR 31 261 -1 304 329 206 7 chr11 38516400 38516555 -112266998 - MIR SINE MIR -65 197 12 188 306 69 0 chr11 38516651 38516723 -112266830 - L2 LINE L2 -93 3220 3144 424 235 295 31 chr11 38516741 38517088 -112266465 + MLT1J1 LTR MaLR 1 403 -6 233 311 122 0 chr11 38517173 38517247 -112266306 + MER5B DNA MER1_type 65 147 -31 199 245 0 0 chr11 38517395 38517444 -112266109 + MIR SINE MIR 144 192 -70 355 83 0 0 chr11 38517450 38517498 -112266055 - MLT1F LTR MaLR 0 542 495 2947 120 23 10 chr11 38517499 38518092 -112265461 - MER4E LTR ERV1 0 766 1 1411 237 189 2 chr11 38518092 38518504 -112265049 - MLT1F LTR MaLR -45 497 9 872 263 46 5 chr11 38518975 38519192 -112264361 + MIR SINE MIR 7 232 -30 628 308 201 9 chr11 38519920 38520507 -112263046 - L2 LINE L2 -51 3262 2548 212 210 0 16 chr11 38521354 38521416 -112262137 + GA-rich Low_complexity Low_complexity 4 64 0 230 321 71 0 chr11 38521860 38521944 -112261609 - L2 LINE L2 -14 3258 3169 240 233 27 14 chr11 38522078 38522151 -112261402 + L2 LINE L2 2986 3059 -213 365 326 14 21 chr11 38522426 38522567 -112260986 - MER5B DNA MER1_type -2 176 37 863 236 52 34 chr11 38522572 38522805 -112260748 + L1MC4a LINE L1 5684 5920 -1888 368 224 0 0 chr11 38522819 38522886 -112260667 - MER58 DNA MER1_type -10 2410 2344 318 266 80 9 chr11 38523496 38523609 -112259944 + MIR SINE MIR 77 197 -65 1314 154 94 50 chr11 38524005 38524353 -112259200 + AluJo SINE Alu 1 361 0 245 294 71 12 chr11 38524658 38524743 -112258810 - L2 LINE L2 -14 3258 3169 190 104 21 21 chr11 38524937 38524985 -112258568 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 504 312 68 71 chr11 38525289 38525642 -112257911 - L2 LINE L2 -3 3310 2959 433 289 69 35 chr11 38525893 38526153 -112257400 - MER102b DNA MER1_type -29 312 44 279 0 0 0 chr11 38526251 38526282 -112257271 + (TG)n Simple_repeat Simple_repeat 2 32 0 864 190 46 11 chr11 38526726 38526900 -112256653 + FRAM SINE Alu 1 173 -3 221 364 134 16 chr11 38526909 38527096 -112256457 - L3 LINE CR1 -1 1576 1368 319 230 20 132 chr11 38527162 38527314 -112256239 - L2 LINE L2 -19 3294 3160 276 77 0 0 chr11 38527317 38527356 -112256197 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 21 82 0 0 chr11 38527469 38527518 -112256035 + AT_rich Low_complexity Low_complexity 1 49 0 1279 208 36 15 chr11 38527996 38528441 -112255112 - MER41-int LTR ERV1 -1913 3023 2470 325 263 44 29 chr11 38528461 38528598 -112254955 - MER41-int LTR ERV1 -2158 3788 3650 291 135 96 0 chr11 38528713 38528765 -112254788 - MLT2B1 LTR ERVL 0 520 464 560 238 98 14 chr11 38528802 38528945 -112254608 + MIR SINE MIR 73 227 -35 3173 60 44 14 chr11 38529539 38529971 -112253582 - L1PA6 LINE L1 -2 6152 5708 530 284 0 7 chr11 38530012 38530167 -112253386 - L1ME LINE L1 -459 5662 5509 315 242 25 56 chr11 38530201 38530362 -112253191 + L1ME4a LINE L1 5966 6121 0 302 298 223 0 chr11 38530668 38530789 -112252764 - MIR SINE MIR -50 212 65 499 221 74 20 chr11 38530832 38530981 -112252572 - MLT1L LTR MaLR -61 554 398 352 245 32 39 chr11 38531105 38531260 -112252293 + L1ME4a LINE L1 5966 6119 -2 432 252 111 107 chr11 38531294 38531592 -112251961 - MLT1L LTR MaLR -289 326 28 298 248 95 51 chr11 38532078 38532215 -112251338 + MLT1I LTR MaLR 1 143 -266 1087 171 17 70 chr11 38533008 38533295 -112250258 + L1MB8 LINE L1 5902 6173 -5 512 236 9 0 chr11 38533447 38533557 -112249996 - MER81 DNA DNA -2 112 2 400 245 119 60 chr11 38533691 38533842 -112249711 - MIR SINE MIR -102 160 1 654 241 50 0 chr11 38533967 38534108 -112249445 + MIR SINE MIR 4 151 -111 259 191 29 0 chr11 38534123 38534191 -112249362 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 290 250 11 23 chr11 38534194 38534282 -112249271 + MIR SINE MIR 164 250 -12 390 304 47 27 chr11 38534597 38534745 -112248808 - MIR SINE MIR -91 171 21 1814 206 58 104 chr11 38534755 38535323 -112248230 - MLT1F LTR MaLR 0 542 1 314 356 0 10 chr11 38536850 38536954 -112246599 + MIR SINE MIR 19 121 -87 190 286 14 14 chr11 38537280 38537350 -112246203 + MIR SINE MIR 129 198 -64 2094 89 0 0 chr11 38537356 38537638 -112245915 - AluSg1 SINE Alu -27 282 1 207 243 252 0 chr11 38537680 38537783 -112245770 + L2 LINE L2 3111 3239 -74 400 236 34 115 chr11 38537836 38538044 -112245509 + L2 LINE L2 3123 3313 0 244 259 0 35 chr11 38538050 38538108 -112245445 - MIR SINE MIR -133 75 20 985 237 127 32 chr11 38538198 38538514 -112245039 - L1ME3A LINE L1 -19 6151 5806 228 299 5 43 chr11 38538731 38538915 -112244638 + (CACCC)n Simple_repeat Simple_repeat 3 179 0 719 263 0 3 chr11 38539201 38539506 -112244047 + (TGG)n Simple_repeat Simple_repeat 1 304 0 249 182 0 0 chr11 38539788 38539843 -112243710 + (CCA)n Simple_repeat Simple_repeat 3 57 0 1256 274 46 29 chr11 38540260 38540554 -112242999 - LTR16C LTR ERVL -2 489 187 2306 109 3 0 chr11 38540554 38540857 -112242696 + AluSc SINE Alu 1 304 -5 1256 274 46 29 chr11 38540857 38540909 -112242644 - LTR16C LTR ERVL -304 187 137 384 237 0 63 chr11 38541666 38541797 -112241756 + L1MC4a LINE L1 5706 5826 -297 488 276 102 31 chr11 38542402 38542627 -112240926 + MIR SINE MIR 15 255 -7 675 245 40 20 chr11 38543724 38543924 -112239629 + MIR SINE MIR 2 205 -57 493 306 58 0 chr11 38544640 38544813 -112238740 + MIR SINE MIR 53 235 -27 396 301 80 0 chr11 38544970 38545133 -112238420 + MIR SINE MIR 87 262 0 856 198 104 0 chr11 38545930 38546132 -112237421 - MER58A DNA MER1_type 0 224 2 3477 150 22 81 chr11 38546136 38546868 -112236685 - LTR8 LTR ERV1 -2 689 1 433 224 127 18 chr11 38547091 38547256 -112236297 + MIR SINE MIR 25 214 -48 340 205 41 98 chr11 38547564 38547593 -112235960 - MIR SINE MIR -77 185 156 4199 141 14 34 chr11 38547593 38547627 -112235926 - L1MB8 LINE L1 -5 6173 6140 1670 204 65 0 chr11 38547627 38547965 -112235588 - MLT1A1 LTR MaLR -3 362 3 4199 141 14 34 chr11 38547965 38548715 -112234838 - L1MB8 LINE L1 -38 6140 5405 340 205 41 98 chr11 38548715 38548807 -112234746 - MIR SINE MIR -106 156 71 378 269 52 21 chr11 38548903 38549062 -112234491 + L1MC4a LINE L1 5778 5947 -174 223 246 102 68 chr11 38549093 38549211 -112234342 + L2 LINE L2 3187 3308 -5 316 365 6 33 chr11 38550231 38550412 -112233141 + L2 LINE L2 2507 2682 -632 648 301 31 13 chr11 38550431 38550657 -112232896 + MIR SINE MIR 2 231 -31 2062 121 0 13 chr11 38550688 38551001 -112232552 - AluSx SINE Alu -3 309 1 188 329 149 19 chr11 38551063 38551224 -112232329 + L2 LINE L2 2794 2975 -339 360 236 67 106 chr11 38551390 38551720 -112231833 - L1MC5 LINE L1 -36 7925 7609 195 42 0 0 chr11 38552656 38552680 -112230873 + (CAGCC)n Simple_repeat Simple_repeat 1 24 0 2388 148 59 12 chr11 38552972 38553377 -112230176 + MSTB LTR MaLR 1 424 -2 213 39 0 0 chr11 38553603 38553629 -112229924 + (TTG)n Simple_repeat Simple_repeat 2 27 0 225 287 127 40 chr11 38553753 38553903 -112229650 + MIR SINE MIR 46 208 -54 2160 149 5 68 chr11 38554430 38554789 -112228764 + MLT1B LTR MaLR 1 332 -58 3540 130 21 4 chr11 38554789 38555305 -112228248 + MER1A DNA MER1_type 3 527 0 2160 149 5 68 chr11 38555305 38555360 -112228193 + MLT1B LTR MaLR 332 389 -1 573 246 152 6 chr11 38556326 38556497 -112227056 + MIR SINE MIR 48 243 -19 227 280 0 0 chr11 38556601 38556651 -112226902 + MIR SINE MIR 9 58 -204 581 242 129 0 chr11 38557914 38558092 -112225461 + MIR SINE MIR 47 247 -15 469 324 12 6 chr11 38558330 38558503 -112225050 - Charlie8 DNA MER1_type -2141 276 103 2229 149 6 6 chr11 38558650 38559013 -112224540 + MLT1A1 LTR MaLR 2 364 -1 386 118 0 106 chr11 38559359 38559458 -112224095 + L1M4 LINE L1 5417 5500 -678 2297 149 27 89 chr11 38559477 38559545 -112224008 + L1MB8 LINE L1 5422 5493 -685 1488 164 0 92 chr11 38559545 38559849 -112223704 + AluJo SINE Alu 1 276 -36 2297 149 27 89 chr11 38559849 38560305 -112223248 + L1MB8 LINE L1 5493 5913 -265 581 205 27 68 chr11 38560336 38560564 -112222989 + L1MB8 LINE L1 5891 6107 -71 610 256 55 73 chr11 38561547 38561727 -112221826 + MLT1K LTR MaLR 311 486 -102 938 244 23 14 chr11 38561727 38561948 -112221605 - MER58A DNA MER1_type 0 224 2 610 256 55 73 chr11 38561948 38562040 -112221513 + MLT1K LTR MaLR 486 578 -10 268 294 46 0 chr11 38562417 38562526 -112221027 + MIR3 SINE MIR 45 158 -50 1403 85 0 0 chr11 38562531 38562707 -112220846 - AluSg/x SINE Alu -8 304 129 248 258 119 50 chr11 38562839 38562998 -112220555 + MIR SINE MIR 72 241 -21 * 590 327 18 0 chr11 38562980 38563197 -112220356 + MIR SINE MIR 15 235 -27 22 0 0 0 chr11 38563386 38563408 -112220145 + AT_rich Low_complexity Low_complexity 1 22 0 262 315 94 38 chr11 38563493 38563760 -112219793 - MLT1L LTR MaLR -125 490 209 2203 143 29 18 chr11 38563981 38564367 -112219186 - MLT1B LTR MaLR 0 390 1 1165 216 204 45 chr11 38565024 38565426 -112218127 + MLT1C LTR MaLR 1 466 -1 260 287 11 11 chr11 38565880 38565974 -112217579 + MLT1K LTR MaLR 492 585 -3 800 213 19 19 chr11 38566022 38566182 -112217371 + FRAM SINE Alu 1 152 -24 2082 254 65 11 chr11 38566186 38566828 -112216725 + L1ME3 LINE L1 5467 6143 -19 250 26 0 0 chr11 38566841 38566879 -112216674 + L1MA3 LINE L1 6268 6305 0 266 252 61 8 chr11 38567003 38567134 -112216419 - L1ME4a LINE L1 -16 6105 5968 6280 63 1 3 chr11 38567265 38568045 -112215508 - LTR17 LTR ERV1 0 780 2 245 270 79 33 chr11 38568075 38568227 -112215326 - L1ME4a LINE L1 -340 5781 5623 260 306 12 0 chr11 38568273 38568358 -112215195 - L1ME4a LINE L1 -510 5611 5526 606 254 76 80 chr11 38568373 38568591 -112214962 - L1MC5 LINE L1 -36 7925 7708 315 0 0 0 chr11 38568591 38568626 -112214927 + (CA)n Simple_repeat Simple_repeat 2 36 0 606 254 76 80 chr11 38568626 38568970 -112214583 - L1MC5 LINE L1 -253 7708 7365 186 43 0 0 chr11 38568970 38568993 -112214560 + (CCCCCA)n Simple_repeat Simple_repeat 6 28 0 4918 139 43 31 chr11 38569470 38570363 -112213190 + MER4D LTR ERV1 1 903 0 2368 139 71 3 chr11 38570565 38570949 -112212604 + MSTA LTR MaLR 1 346 -18 1042 211 67 96 chr11 38571166 38571687 -112211866 - MER31-int LTR ERV1 -125 6206 4411 333 189 123 38 chr11 38571718 38571824 -112211729 - LTR37A LTR ERV1 -311 115 1 5318 183 21 70 chr11 38571825 38573091 -112210462 - MER31-int LTR ERV1 -687 4249 3048 2062 145 3 0 chr11 38573091 38573394 -112210159 - AluSq SINE Alu -9 304 1 5318 183 21 70 chr11 38573394 38573451 -112210102 - MER31-int LTR ERV1 -1888 3048 2990 280 311 28 44 chr11 38573553 38573620 -112209933 + L2 LINE L2 2484 2551 -763 2643 145 22 0 chr11 38573620 38574035 -112209518 + MSTB LTR MaLR 1 424 -2 280 311 28 44 chr11 38574035 38574147 -112209406 + L2 LINE L2 2551 2660 -654 378 192 30 30 chr11 38574156 38574255 -112209298 - MLT1J LTR MaLR -9 502 404 2675 237 34 16 chr11 38574265 38574949 -112208604 + L1ME1 LINE L1 5451 6146 -20 999 185 158 65 chr11 38574993 38575361 -112208192 - MLT1J LTR MaLR -108 403 2 269 309 33 46 chr11 38575378 38575530 -112208023 + L2 LINE L2 2698 2847 -467 246 295 135 48 chr11 38575705 38575912 -112207641 + L2 LINE L2 3089 3313 0 1745 153 80 0 chr11 38576158 38576433 -112207120 - AluJb SINE Alu -15 297 1 356 143 162 19 chr11 38577193 38577298 -112206255 + MER113 DNA MER1_type? 24 143 -378 1922 140 14 10 chr11 38577306 38577598 -112205955 - AluJb SINE Alu -19 293 1 198 0 0 0 chr11 38577598 38577620 -112205933 + (T)n Simple_repeat Simple_repeat 1 22 0 297 234 85 32 chr11 38577646 38577740 -112205813 + L2 LINE L2 3173 3271 -1 230 326 12 12 chr11 38577975 38578061 -112205492 + L2 LINE L2 3187 3272 0 208 229 60 72 chr11 38578061 38578144 -112205409 - MIR SINE MIR -78 184 103 1348 215 56 53 chr11 38578245 38578585 -112204968 + MLT1A1 LTR MaLR 23 363 -2 562 277 168 12 chr11 38578869 38579253 -112204300 - MLT1J LTR MaLR -3 508 1 595 92 0 0 chr11 38579806 38579882 -112203671 - AluSg/x SINE Alu -23 289 214 2500 105 6 25 chr11 38579882 38580244 -112203309 + THE1A LTR MaLR 1 355 0 1590 133 0 0 chr11 38580244 38580462 -112203091 - AluSq SINE Alu -95 218 1 845 234 84 0 chr11 38580572 38580799 -112202754 - MIR SINE MIR -10 252 7 570 274 107 28 chr11 38581177 38581429 -112202124 + Charlie8 DNA MER1_type 1 272 -2145 372 254 249 11 chr11 38581531 38581716 -112201837 - MIR SINE MIR -28 234 6 185 277 0 84 chr11 38582699 38582782 -112200771 + MIR SINE MIR 123 198 -64 329 349 121 6 chr11 38584777 38584943 -112198610 - MIR SINE MIR -58 204 20 701 90 120 0 chr11 38585004 38585171 -112198382 + AluSx SINE Alu 5 191 -121 308 195 126 69 chr11 38585629 38585788 -112197765 - L1MD1 LINE L1 -299 5943 5776 679 206 30 12 chr11 38585885 38586050 -112197503 - AluSx SINE Alu -23 286 119 240 86 0 0 chr11 38586052 38586087 -112197466 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 966 127 0 8 chr11 38586089 38586223 -112197330 - AluSx SINE Alu -180 133 1 7938 202 49 28 chr11 38586224 38588347 -112195206 - L1MDa LINE L1 -1770 4770 2693 1796 163 0 3 chr11 38588347 38588668 -112194885 - AluJb SINE Alu 0 320 1 7938 202 49 28 chr11 38588668 38589228 -112194325 - L1MDa LINE L1 -3847 2693 2146 2427 207 32 43 chr11 38589228 38589788 -112193765 + MLT2B3 LTR ERVL 1 554 0 7938 202 49 28 chr11 38589788 38591535 -112192018 - L1MDa LINE L1 -4394 2146 17 1877 162 0 0 chr11 38592371 38592667 -112190886 - AluJb SINE Alu -16 296 1 610 259 197 17 chr11 38592780 38593070 -112190483 - LTR16C LTR ERVL -53 438 97 250 247 107 81 chr11 38594061 38594482 -112189071 - L1ME4a LINE L1 0 6121 5690 282 340 89 25 chr11 38594503 38594785 -112188768 - L1ME4a LINE L1 -2182 5626 5327 255 277 294 11 chr11 38595739 38595916 -112187637 - MIR SINE MIR -28 234 8 935 224 67 55 chr11 38596568 38596747 -112186806 - Charlie7 DNA MER1_type -1927 685 509 2127 102 0 0 chr11 38596747 38597041 -112186512 + AluSc SINE Alu 2 295 -14 935 224 67 55 chr11 38597041 38597222 -112186331 - Charlie7 DNA MER1_type -2103 509 321 273 187 178 28 chr11 38597254 38597361 -112186192 - Charlie7 DNA MER1_type -2445 167 45 2123 79 45 0 chr11 38598719 38599009 -112184544 + AluY SINE Alu 1 303 -8 472 263 108 52 chr11 38599259 38599491 -112184062 + MIR SINE MIR 16 260 -2 235 223 149 50 chr11 38600513 38600634 -112182919 + MLT1K LTR MaLR 141 273 -315 504 267 33 7 chr11 38600832 38600982 -112182571 - MER74B LTR ERVL 0 622 469 1724 211 44 86 chr11 38601850 38602321 -112181232 - MER74A LTR ERVL -13 545 101 243 0 0 0 chr11 38602321 38602348 -112181205 + (TC)n Simple_repeat Simple_repeat 2 28 0 1724 211 44 86 chr11 38602348 38602445 -112181108 - MER74A LTR ERVL -457 101 1 909 227 132 53 chr11 38602445 38602802 -112180751 - MLT1I LTR MaLR -20 389 5 1664 185 13 0 chr11 38602877 38603175 -112180378 + AluJb SINE Alu 1 302 -10 32 26 0 0 chr11 38603815 38603854 -112179699 + AT_rich Low_complexity Low_complexity 1 39 0 753 277 107 36 chr11 38604611 38605022 -112178531 - MLT1J LTR MaLR -8 503 64 270 308 55 11 chr11 38605247 38605338 -112178215 + L2 LINE L2 3202 3296 -17 232 278 148 60 chr11 38605838 38606054 -112177499 + L2 LINE L2 2924 3158 -114 219 267 56 81 chr11 38606984 38607145 -112176408 + L2 LINE L2 2588 2744 -570 230 237 34 0 chr11 38607412 38607471 -112176082 + L2 LINE L2 3209 3269 -3 241 286 45 9 chr11 38608128 38608240 -112175313 + L2 LINE L2 2555 2670 -644 527 254 88 77 chr11 38608255 38608515 -112175038 + L2 LINE L2 2346 2608 -706 234 222 0 0 chr11 38608765 38608819 -112174734 + CT-rich Low_complexity Low_complexity 2 55 0 1792 93 54 0 chr11 38608819 38609077 -112174476 - AluSg SINE Alu -38 272 1 267 294 112 29 chr11 38609092 38609262 -112174291 - L2 LINE L2 -148 3165 2982 721 277 15 5 chr11 38609384 38609586 -112173967 - MIR SINE MIR -46 216 13 2018 118 3 3 chr11 38609638 38609934 -112173619 + AluSx SINE Alu 2 297 -15 186 103 0 0 chr11 38611199 38611228 -112172325 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 327 287 11 0 chr11 38611660 38611754 -112171799 - L1ME LINE L1 -424 5697 5603 717 134 22 30 chr11 38613248 38613382 -112170171 - AluJo SINE Alu -178 134 2 2066 94 7 3 chr11 38613412 38613711 -112169842 + AluY SINE Alu 1 300 -11 377 325 47 0 chr11 38613712 38613924 -112169629 + L1MC4a LINE L1 5690 5911 -1897 1198 207 5 0 chr11 38614229 38614437 -112169116 - MER58A DNA MER1_type -9 215 7 307 207 64 114 chr11 38614498 38614638 -112168915 + L1ME4a LINE L1 5978 6110 -11 743 320 88 12 chr11 38614741 38615072 -112168481 + L3 LINE CR1 912 1267 -310 560 287 5 69 chr11 38615294 38615482 -112168071 + MIR SINE MIR 77 252 -10 184 125 0 31 chr11 38615659 38615691 -112167862 + MIR SINE MIR 111 141 -67 288 317 50 37 chr11 38616131 38616292 -112167261 - MIR SINE MIR -26 236 74 1993 120 17 0 chr11 38616409 38616709 -112166844 + AluSx SINE Alu 1 305 -7 229 296 14 14 chr11 38617459 38617530 -112166023 - L2 LINE L2 -665 2649 2579 480 169 9 5 chr11 38617536 38617758 -112165795 + (TG)n Simple_repeat Simple_repeat 1 223 0 652 261 169 0 chr11 38618859 38619066 -112164487 - MIR SINE MIR 0 262 21 2075 108 0 41 chr11 38619078 38619392 -112164161 - AluSx SINE Alu -11 301 1 1953 145 7 0 chr11 38619445 38619741 -112163812 - AluJb SINE Alu -14 298 1 231 299 54 27 chr11 38619822 38619969 -112163584 - L2 LINE L2 -1360 1954 1804 10553 130 25 2 chr11 38619981 38621608 -112161945 + Tigger1 DNA MER2_type 1 1663 -755 3714 116 32 28 chr11 38621599 38622201 -112161352 + Tigger1 DNA MER2_type 1815 2418 0 * 589 218 21 42 chr11 38622597 38622739 -112160814 + MIR3 SINE MIR 39 177 -31 32 43 0 0 chr11 38622975 38623021 -112160532 + AT_rich Low_complexity Low_complexity 1 46 0 1790 133 30 0 chr11 38623292 38623563 -112159990 + AluSx SINE Alu 1 279 -33 489 47 0 0 chr11 38623563 38623627 -112159926 + (CA)n Simple_repeat Simple_repeat 1 64 0 200 225 50 0 chr11 38623894 38623934 -112159619 - L2 LINE L2 -8 3305 3264 635 216 108 0 chr11 38624467 38624606 -112158947 + MER45A DNA AcHobo 24 177 -1 2160 188 17 23 chr11 38624611 38625089 -112158464 + Charlie1b DNA MER1_type 41 515 -8 204 283 211 26 chr11 38625347 38625499 -112158054 + L3 LINE CR1 1382 1561 -16 229 229 33 0 chr11 38626163 38626224 -112157329 + CT-rich Low_complexity Low_complexity 1 63 0 955 187 57 57 chr11 38627554 38627784 -112155769 + MIR SINE MIR 12 241 -21 763 274 91 25 chr11 38627888 38628129 -112155424 + MIR SINE MIR 3 259 -3 265 318 45 11 chr11 38628304 38628392 -112155161 + MIR SINE MIR 36 126 -136 207 349 0 24 chr11 38628426 38628509 -112155044 - L2 LINE L2 -1 3312 3232 279 271 31 21 chr11 38628522 38628618 -112154935 + MIR SINE MIR 160 256 -6 621 285 33 24 chr11 38629623 38629848 -112153705 + MIR SINE MIR 5 235 -27 210 175 25 0 chr11 38629938 38629978 -112153575 + GA-rich Low_complexity Low_complexity 1 41 0 253 226 16 32 chr11 38630396 38630458 -112153095 + C-rich Low_complexity Low_complexity 1 61 0 291 253 0 69 chr11 38630903 38630990 -112152563 - MIR SINE MIR -26 236 156 309 100 0 0 chr11 38631264 38631314 -112152239 + (TC)n Simple_repeat Simple_repeat 1 50 0 2584 285 95 19 chr11 38631333 38632004 -112151549 - L2 LINE L2 -2215 1099 329 2099 170 92 22 chr11 38632004 38632493 -112151060 + Charlie1b DNA MER1_type 1 523 0 2584 285 95 19 chr11 38632493 38632799 -112150754 - L2 LINE L2 -2985 329 48 2048 102 3 7 chr11 38633111 38633420 -112150133 - AluSx SINE Alu 0 308 1 731 323 141 31 chr11 38633615 38634070 -112149483 + L2 LINE L2 2807 3311 -2 2203 93 0 6 chr11 38634123 38634435 -112149118 + AluSg SINE Alu 1 310 0 1991 136 3 0 chr11 38635307 38635616 -112147937 + AluSx SINE Alu 1 310 -2 545 76 13 0 chr11 38636836 38636915 -112146638 + (GGA)n Simple_repeat Simple_repeat 1 80 0 186 103 0 0 chr11 38637045 38637074 -112146479 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 366 293 72 49 chr11 38639272 38639507 -112144046 - MIR SINE MIR -18 244 14 449 242 137 13 chr11 38640385 38640538 -112143015 - MIR SINE MIR -13 249 78 21 0 0 0 chr11 38642353 38642374 -112141179 + AT_rich Low_complexity Low_complexity 1 21 0 2201 75 0 7 chr11 38642423 38642717 -112140836 + AluSc SINE Alu 1 292 -17 543 296 52 12 chr11 38642799 38642971 -112140582 + MIR3 SINE MIR 20 198 -10 451 194 284 0 chr11 38642996 38643130 -112140423 - MER5A DNA MER1_type -2 187 16 1049 146 96 20 chr11 38643160 38643359 -112140194 - MER20 DNA MER1_type 0 219 6 307 355 65 0 chr11 38643371 38643509 -112140044 + MER5B DNA MER1_type 1 147 -31 470 298 40 45 chr11 38643566 38643764 -112139789 + MIR SINE MIR 56 252 -10 371 281 16 81 chr11 38643935 38644120 -112139433 + MER102b DNA MER1_type 6 178 -163 274 239 34 23 chr11 38644118 38644206 -112139347 + MER102b DNA MER1_type 251 339 -2 * 2007 93 0 0 chr11 38644231 38644501 -112139052 - AluSx SINE Alu -2 310 41 222 237 17 17 chr11 38645163 38645207 -112138346 + CT-rich Low_complexity Low_complexity 2 48 -12 1760 174 7 0 chr11 38645207 38645517 -112138036 - AluJo SINE Alu 0 312 1 222 237 17 17 chr11 38645517 38645531 -112138022 + CT-rich Low_complexity Low_complexity 47 60 0 1695 170 35 0 chr11 38646559 38646848 -112136705 + AluJo SINE Alu 1 299 -13 600 254 14 42 chr11 38646882 38647024 -112136529 - L2 LINE L2 -15 3298 3161 570 309 73 20 chr11 38647189 38647435 -112136118 + MIR SINE MIR 4 262 0 1928 70 4 0 chr11 38647728 38647972 -112135581 + L1PA5 LINE L1 5907 6151 -3 314 254 33 41 chr11 38648166 38648288 -112135265 - MIR3 SINE MIR -20 188 68 751 237 53 68 chr11 38648383 38648649 -112134904 + MER102a DNA MER1_type 43 304 -26 203 276 58 81 chr11 38648824 38648911 -112134642 + MIR SINE MIR 33 117 -145 734 307 132 19 chr11 38649070 38649235 -112134318 - L1MC4a LINE L1 -1779 6029 5884 2489 49 0 3 chr11 38649235 38649543 -112134010 - AluY SINE Alu -4 307 1 734 307 132 19 chr11 38649543 38649856 -112133697 - L1MC4a LINE L1 -1924 5884 5497 436 309 117 9 chr11 38649917 38650140 -112133413 - MIR SINE MIR 0 262 16 1909 87 11 4 chr11 38650159 38650424 -112133129 - AluSq SINE Alu -13 300 34 500 343 84 38 chr11 38650512 38650929 -112132624 - L2 LINE L2 0 3272 2837 447 296 41 35 chr11 38650984 38651156 -112132397 + MIR SINE MIR 9 181 -81 1061 101 4 0 chr11 38652057 38652288 -112131265 + (TA)n Simple_repeat Simple_repeat 1 232 0 3796 88 3 34 chr11 38652288 38652959 -112130594 - L1P5 LINE L1 -370 5781 5126 304 276 86 55 chr11 38652960 38653123 -112130430 - MIR3 SINE MIR -9 199 32 573 163 0 0 chr11 38653478 38653570 -112129983 - FRAM SINE Alu -11 165 74 642 158 0 219 chr11 38653572 38653800 -112129753 - MER20 DNA MER1_type -41 178 1 353 238 12 0 chr11 38653933 38654013 -112129540 - L2 LINE L2 0 3313 3233 2325 131 9 6 chr11 38654029 38654365 -112129188 - MER1B DNA MER1_type 0 337 1 466 254 136 40 chr11 38654553 38654730 -112128823 + MIR SINE MIR 26 219 -43 222 290 32 0 chr11 38655176 38655238 -112128315 + MIR SINE MIR 188 251 -11 10573 109 5 11 chr11 38655398 38656930 -112126623 - L1P LINE L1 -4323 1823 301 7113 118 16 7 chr11 38657787 38658672 -112124881 - L1MA3 LINE L1 0 6305 5430 1915 147 70 17 chr11 38658672 38659027 -112124526 - THE1C LTR MaLR -1 374 1 7113 118 16 7 chr11 38659027 38659936 -112123617 - L1MA3 LINE L1 -875 5430 4493 1165 183 16 75 chr11 38659936 38660188 -112123365 + MLT1B LTR MaLR 154 390 0 245 296 57 11 chr11 38660221 38660309 -112123244 - MIR SINE MIR -4 258 167 334 262 134 55 chr11 38660395 38660541 -112123012 - MIR SINE MIR -21 241 79 1157 230 154 29 chr11 38660541 38660988 -112122565 - MLT1D LTR MaLR -2 503 1 334 262 134 55 chr11 38660988 38661005 -112122548 - MIR SINE MIR -183 79 65 499 290 73 19 chr11 38661173 38661432 -112122121 + L1MC4a LINE L1 5610 5882 -1926 976 119 20 7 chr11 38661490 38661641 -112121912 - MER3 DNA MER1_type -56 153 1 21 26 0 26 chr11 38661808 38661827 -112121726 + AT_rich Low_complexity Low_complexity 1 19 -19 1635 182 0 26 chr11 38661827 38662129 -112121424 - AluJo SINE Alu -18 294 1 21 26 0 26 chr11 38662129 38662148 -112121405 + AT_rich Low_complexity Low_complexity 19 38 0 202 288 41 0 chr11 38662292 38662365 -112121188 + MIR SINE MIR 64 139 -69 665 235 62 17 chr11 38662688 38662867 -112120686 - MIR SINE MIR -6 256 70 337 210 30 15 chr11 38663035 38663148 -112120405 + MIR SINE MIR 1 116 -92 2130 118 7 0 chr11 38663157 38663463 -112120090 - AluSg SINE Alu -2 308 1 2033 117 40 3 chr11 38663543 38663843 -112119710 - AluSx SINE Alu -1 311 1 2101 86 7 0 chr11 38663882 38664173 -112119380 - AluSp SINE Alu 0 313 21 189 343 57 0 chr11 38664174 38664244 -112119309 - L2 LINE L2 -44 3228 3155 227 280 248 32 chr11 38665996 38666121 -112117432 - MIR SINE MIR -60 202 51 355 248 74 25 chr11 38666318 38666439 -112117114 + L2 LINE L2 3146 3272 0 290 313 70 31 chr11 38666454 38666582 -112116971 + L2 LINE L2 3139 3271 -1 1830 134 10 38 chr11 38667519 38667832 -112115721 - AluJo SINE Alu -8 304 1 2122 113 10 0 chr11 38668341 38668641 -112114912 - AluSx SINE Alu -9 303 1 193 341 12 24 chr11 38669740 38669825 -112113728 - L2 LINE L2 -2 3270 3187 346 218 146 9 chr11 38669869 38669979 -112113574 - L2 LINE L2 -11 3302 3178 2063 118 10 0 chr11 38670367 38670664 -112112889 - AluSg1 SINE Alu -9 300 1 324 197 53 0 chr11 38670920 38670996 -112112557 - MIR3 SINE MIR -29 179 100 237 286 0 0 chr11 38671244 38671307 -112112246 - Charlie8 DNA MER1_type 0 2417 2355 712 274 37 5 chr11 38671350 38671540 -112112013 - Charlie8 DNA MER1_type -2216 201 6 280 269 186 32 chr11 38671588 38671744 -112111809 - MIR SINE MIR -33 229 50 1607 184 49 38 chr11 38671767 38672114 -112111439 - MLT1A2 LTR MaLR -5 369 19 691 253 99 18 chr11 38672959 38673180 -112110373 + MIR SINE MIR 20 258 -4 377 129 40 59 chr11 38673304 38673508 -112110045 + AluJo SINE Alu 3 290 -12 269 227 91 0 chr11 38673609 38673675 -112109878 + L3b LINE CR1 1266 1337 -246 2012 106 3 26 chr11 38674091 38674394 -112109159 + AluSx SINE Alu 1 296 -16 841 238 52 19 chr11 38675790 38676000 -112107553 - MIR SINE MIR 0 262 46 339 310 102 0 chr11 38676323 38676520 -112107033 + MER102a DNA MER1_type 92 308 -22 348 258 117 8 chr11 38676596 38676724 -112106829 + MIR SINE MIR 111 252 -10 686 288 47 51 chr11 38678047 38678304 -112105249 - MIR SINE MIR -1 261 6 299 293 84 84 chr11 38678242 38678457 -112105096 + MIR SINE MIR 42 256 -6 * 218 91 68 0 chr11 38679776 38679820 -112103733 + T-rich Low_complexity Low_complexity 1 47 0 7715 20 4 0 chr11 38679820 38681328 -112102225 - L1PA3 LINE L1 -3 6152 4637 1877 151 0 0 chr11 38681561 38681852 -112101701 + AluSx SINE Alu 1 291 -21 26 0 0 0 chr11 38681855 38681881 -112101672 + AT_rich Low_complexity Low_complexity 1 26 0 413 250 68 56 chr11 38682034 38682286 -112101267 - L1MC4a LINE L1 -1853 5955 5701 350 308 19 10 chr11 38684233 38684337 -112099216 + L2 LINE L2 3168 3272 0 246 243 187 28 chr11 38684516 38684623 -112098930 + MIR SINE MIR 40 163 -99 2385 58 0 0 chr11 38684623 38684917 -112098636 + AluY SINE Alu 8 301 -10 1695 193 173 16 chr11 38685604 38686044 -112097509 - Charlie1b DNA MER1_type 0 523 15 610 233 81 35 chr11 38686215 38686415 -112097138 + MIR SINE MIR 7 211 -51 1041 219 66 8 chr11 38686437 38686679 -112096874 + MIR SINE MIR 2 257 -5 396 0 0 0 chr11 38686937 38686981 -112096572 + (CA)n Simple_repeat Simple_repeat 2 45 0 219 313 8 47 chr11 38687635 38687763 -112095790 + L2 LINE L2 3171 3293 -20 671 324 76 18 chr11 38687805 38688253 -112095300 - MER113 DNA MER1_type? -43 478 5 237 286 0 0 chr11 38689338 38689387 -112094166 + (TG)n Simple_repeat Simple_repeat 2 50 0 596 218 109 45 chr11 38690039 38690440 -112093113 + Tigger8 DNA MER2_type 131 573 -93 672 170 127 67 chr11 38690817 38690929 -112092624 + MER5A DNA MER1_type 5 132 -57 2184 98 0 3 chr11 38690929 38691224 -112092329 - AluSx SINE Alu -18 294 1 672 170 127 67 chr11 38691224 38691276 -112092277 + MER5A DNA MER1_type 132 179 -10 560 284 20 59 chr11 38691271 38691475 -112092078 - MIR SINE MIR -35 227 32 * 224 346 0 0 chr11 38692312 38692390 -112091163 + MIR SINE MIR 2 79 -183 396 302 87 13 chr11 38692459 38692608 -112090945 + MIR SINE MIR 88 247 -15 334 293 263 10 chr11 38692661 38692859 -112090694 + MIR SINE MIR 3 250 -12 291 180 0 0 chr11 38693807 38693857 -112089696 - MER45A DNA AcHobo 0 178 129 1525 287 94 15 chr11 38693977 38694496 -112089057 - MER45C DNA AcHobo -353 600 41 196 310 52 0 chr11 38694977 38695035 -112088518 + L3 LINE CR1 1514 1574 -3 383 328 41 8 chr11 38695408 38695530 -112088023 - L2 LINE L2 -4 3309 3184 1989 129 0 7 chr11 38696230 38696525 -112087028 + AluSx SINE Alu 1 293 -19 344 268 89 42 chr11 38696771 38696967 -112086586 - MIR SINE MIR -38 224 15 237 235 162 81 chr11 38697287 38697423 -112086130 + MIR SINE MIR 110 256 -6 24 32 0 0 chr11 38697548 38697579 -112085974 + AT_rich Low_complexity Low_complexity 1 31 0 323 23 23 0 chr11 38698256 38698300 -112085253 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 260 319 160 6 chr11 38698637 38698806 -112084747 + MIR SINE MIR 39 233 -29 1898 162 48 31 chr11 38699191 38699605 -112083948 - L1MB2 LINE L1 -3 6168 5748 1987 106 24 3 chr11 38699653 38699945 -112083608 - AluSx SINE Alu -14 298 1 553 360 70 29 chr11 38701357 38701699 -112081854 - L2 LINE L2 -9 3263 2908 316 149 40 27 chr11 38702828 38702902 -112080651 + MIR SINE MIR 46 120 -142 216 313 172 45 chr11 38704045 38704179 -112079374 + MIR3 SINE MIR 9 159 -49 382 159 212 106 chr11 38704746 38704791 -112078762 + MER53 DNA DNA 2 41 -148 1497 171 19 0 chr11 38704791 38705049 -112078504 + AluJb SINE Alu 32 294 -18 382 159 212 106 chr11 38705049 38705173 -112078380 + MER53 DNA DNA 41 189 0 311 250 48 12 chr11 38705330 38705414 -112078139 - MER115 DNA AcHobo -483 210 124 631 287 48 68 chr11 38706706 38706753 -112076800 + MIR SINE MIR 8 54 -208 2183 161 32 72 chr11 38706753 38707195 -112076358 - MSTB LTR MaLR 0 426 3 9142 177 22 12 chr11 38707196 38708448 -112075105 - MSTB-int LTR MaLR 0 1651 378 2172 109 0 0 chr11 38708448 38708742 -112074811 - AluSg SINE Alu -16 294 1 9142 177 22 12 chr11 38708742 38709124 -112074429 - MSTB-int LTR MaLR -1273 378 1 2331 164 28 28 chr11 38709124 38709550 -112074003 - MSTB LTR MaLR 0 426 1 631 287 48 68 chr11 38709550 38709750 -112073803 + MIR SINE MIR 52 253 -9 382 257 0 14 chr11 38710003 38710109 -112073444 + L1P4 LINE L1 5507 5607 -533 388 241 64 35 chr11 38710238 38710379 -112073174 + L1MC4a LINE L1 5755 5899 -1909 217 318 178 9 chr11 38711442 38711549 -112072004 + MIR SINE MIR 20 144 -118 542 253 58 17 chr11 38711690 38711864 -112071689 + MIR SINE MIR 79 259 -3 192 77 0 0 chr11 38712682 38712708 -112070845 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 274 325 12 0 chr11 38712715 38712795 -112070758 - L2 LINE L2 -18 3254 3174 575 297 36 36 chr11 38713214 38713436 -112070117 - MIR SINE MIR -6 256 35 249 270 0 0 chr11 38714956 38715019 -112068534 + L2 LINE L2 2737 2799 -515 260 321 37 0 chr11 38715171 38715252 -112068301 + L2 LINE L2 3169 3252 -20 253 285 80 33 chr11 38715446 38715591 -112067962 - MIR SINE MIR -63 145 6 580 240 16 0 chr11 38716280 38716405 -112067148 + MER45A DNA AcHobo 46 172 -6 637 309 20 10 chr11 38717314 38717518 -112066035 + MIR SINE MIR 7 212 -50 21 0 0 0 chr11 38718721 38718742 -112064811 + AT_rich Low_complexity Low_complexity 1 21 0 354 262 196 0 chr11 38718747 38718854 -112064699 + L2 LINE L2 3176 3303 -10 3290 142 25 23 chr11 38719427 38719989 -112063564 - MER34B LTR ERV1 0 565 3 539 301 40 75 chr11 38720221 38720647 -112062906 - L2 LINE L2 -9 3263 2853 189 309 0 0 chr11 38723380 38723422 -112060131 + L2 LINE L2 3257 3298 -15 2348 90 0 0 chr11 38723975 38724286 -112059267 + AluY SINE Alu 1 311 0 224 263 40 40 chr11 38724981 38725057 -112058496 + MIR SINE MIR 113 188 -74 678 275 53 14 chr11 38726169 38726376 -112057177 + MIR SINE MIR 27 241 -21 337 285 31 79 chr11 38726615 38726843 -112056710 - L1ME4a LINE L1 -39 6082 5866 186 368 146 11 chr11 38726850 38727035 -112056518 + L2 LINE L2 2196 2405 -909 599 252 32 35 chr11 38727742 38727979 -112055574 + MIR SINE MIR 10 244 -18 2187 91 7 3 chr11 38727992 38728290 -112055263 + AluSq SINE Alu 1 299 -14 465 280 154 55 chr11 38732538 38732831 -112050722 - L2 LINE L2 -3 3310 2989 2012 176 90 38 chr11 38732842 38733318 -112050235 - MLT1D LTR MaLR -4 501 1 199 298 121 16 chr11 38734017 38734141 -112049412 + L2 LINE L2 2727 2863 -451 312 189 47 88 chr11 38734910 38735030 -112048523 - MIR SINE MIR -79 183 71 33 85 0 0 chr11 38735265 38735347 -112048206 + AT_rich Low_complexity Low_complexity 1 82 0 1150 197 144 3 chr11 38735792 38736357 -112047196 + LTR50 LTR ERVL 8 792 -3 411 335 94 38 chr11 38737064 38737458 -112046095 + L1ME LINE L1 2 417 -5653 564 193 138 0 chr11 38737809 38737990 -112045563 + L1ME LINE L1 2051 2256 -3824 1486 149 0 21 chr11 38738065 38738306 -112045247 - MER46A DNA MER2_type 0 236 1 797 259 34 65 chr11 38738312 38738574 -112044979 - MIR SINE MIR -6 256 3 252 0 0 0 chr11 38738727 38738755 -112044798 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 369 0 0 0 chr11 38738754 38738795 -112044758 + (CA)n Simple_repeat Simple_repeat 1 41 0 999 244 7 44 chr11 38739590 38739860 -112043693 - MIR SINE MIR 0 262 3 186 209 0 0 chr11 38740283 38740326 -112043227 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 4681 222 54 27 chr11 38740450 38742596 -112040957 + L1MB8 LINE L1 3903 5989 -189 1718 147 70 3 chr11 38742596 38742937 -112040616 - L1MB3 LINE L1 0 6183 5820 3010 132 8 6 chr11 38742947 38743447 -112040106 - L1MB3 LINE L1 -4 6179 5679 4681 222 54 27 chr11 38743447 38743497 -112040056 + L1MB8 LINE L1 5997 6172 -6 226 150 100 0 chr11 38743609 38743669 -112039884 + (TTAAG)n Simple_repeat Simple_repeat 3 68 0 361 167 167 7 chr11 38743778 38743916 -112039637 - HAL1b LINE L1 -251 1097 938 1424 195 63 63 chr11 38744380 38744842 -112038711 + LTR37B LTR ERV1 7 468 0 401 286 32 65 chr11 38744884 38745069 -112038484 - MER5A DNA MER1_type -5 184 6 282 222 0 25 chr11 38745302 38745383 -112038170 + MER116 DNA Mariner 2 80 0 1151 182 80 10 chr11 38746011 38746324 -112037229 + LTR37A LTR ERV1 92 426 0 348 186 82 21 chr11 38747321 38747418 -112036135 - FLAM_C SINE Alu -1 132 30 6605 14 0 0 chr11 38748363 38749149 -112034404 - L1PA2 LINE L1 0 6155 5370 * 6831 26 6 0 chr11 38749145 38749999 -112033554 + L1PA2 LINE L1 4519 5377 -769 2288 90 0 37 chr11 38750214 38750536 -112033017 + AluY SINE Alu 1 310 -1 22 35 0 0 chr11 38750550 38750579 -112032974 + AT_rich Low_complexity Low_complexity 1 29 0 268 306 61 0 chr11 38752103 38752201 -112031352 - L2 LINE L2 -24 3289 3186 2048 138 3 0 chr11 38752824 38753122 -112030431 - AluSx SINE Alu -13 299 1 2171 96 7 7 chr11 38753591 38753893 -112029660 + AluSx SINE Alu 2 303 -9 319 164 90 0 chr11 38754402 38754469 -112029084 - MIR3 SINE MIR -13 195 123 198 314 139 66 chr11 38757531 38757984 -112025569 + L2 LINE L2 1330 1815 -1499 24 0 0 0 chr11 38758253 38758277 -112025276 + AT_rich Low_complexity Low_complexity 1 24 0 324 379 78 4 chr11 38758755 38758998 -112024555 + L2 LINE L2 2412 2672 -642 273 234 65 0 chr11 38759484 38759561 -112023992 + MER58B DNA MER1_type 216 297 -44 306 249 50 134 chr11 38760078 38760167 -112023386 - MIR3 SINE MIR -6 202 138 916 232 72 0 chr11 38760167 38760374 -112023179 - MER58A DNA MER1_type 0 224 3 306 249 50 134 chr11 38760374 38760485 -112023068 - MIR3 SINE MIR -70 138 19 1897 161 3 30 chr11 38760862 38761166 -112022387 + AluJo SINE Alu 1 296 -16 29 28 0 0 chr11 38761593 38761629 -112021924 + AT_rich Low_complexity Low_complexity 1 36 0 2350 93 7 0 chr11 38762391 38762692 -112020861 + AluSp SINE Alu 1 303 -10 2514 72 0 7 chr11 38763076 38763381 -112020172 + AluSp SINE Alu 1 303 -10 2400 84 0 3 chr11 38764665 38764964 -112018589 - AluSg SINE Alu -12 298 1 241 263 179 11 chr11 38765133 38765228 -112018325 - L2 LINE L2 -3 3310 3200 548 70 0 0 chr11 38766318 38766389 -112017164 + Alu SINE Alu 222 292 -20 1008 263 100 43 chr11 38766788 38767520 -112016033 - L2 LINE L2 -1 3312 2518 188 323 108 15 chr11 38767823 38767888 -112015665 - MIR SINE MIR -119 89 19 23 0 0 0 chr11 38768517 38768540 -112015013 + AT_rich Low_complexity Low_complexity 1 23 0 224 250 26 53 chr11 38768889 38768965 -112014588 + MIR SINE MIR 68 141 -121 762 278 98 0 chr11 38769509 38769714 -112013839 + MIR SINE MIR 13 237 -25 506 300 47 43 chr11 38769663 38769896 -112013657 - MIR SINE MIR -17 245 12 * 1930 119 45 0 chr11 38770078 38770364 -112013189 - AluSx SINE Alu -13 299 1 14530 118 40 13 chr11 38770632 38772986 -112010567 - Tigger1 DNA MER2_type 0 2418 1 412 219 20 95 chr11 38772987 38773197 -112010356 - L1ME LINE L1 -449 5672 5479 318 300 0 11 chr11 38773849 38773939 -112009614 + L1MC4 LINE L1 6614 6702 -1340 737 173 22 0 chr11 38773959 38774192 -112009361 + (TA)n Simple_repeat Simple_repeat 1 238 0 330 244 11 33 chr11 38774196 38774286 -112009267 + L1MC4 LINE L1 6615 6702 -1340 632 200 23 0 chr11 38774309 38774484 -112009069 + (TA)n Simple_repeat Simple_repeat 2 180 0 1821 137 58 4 chr11 38774613 38774890 -112008663 - AluJb SINE Alu -20 292 1 24 32 0 0 chr11 38777118 38777149 -112006404 + GC_rich Low_complexity Low_complexity 1 31 0 830 222 36 63 chr11 38777702 38777916 -112005637 + MIR SINE MIR 8 215 -47 1906 174 0 7 chr11 38777916 38778226 -112005327 + AluJb SINE Alu 1 308 -4 830 222 36 63 chr11 38778226 38778263 -112005290 + MIR SINE MIR 215 252 -10 273 274 60 17 chr11 38778582 38778699 -112004854 + MIR SINE MIR 70 191 -71 311 319 18 0 chr11 38778863 38778976 -112004577 + MLT1J2 LTR MaLR 49 163 -287 346 301 39 8 chr11 38779020 38779200 -112004353 + MLT1I LTR MaLR 258 395 -14 507 125 0 0 chr11 38779499 38779579 -112003974 + MADE1 DNA Mariner 1 80 0 1949 194 12 30 chr11 38779652 38780053 -112003500 + MSTD LTR MaLR 3 396 0 1703 183 143 36 chr11 38780276 38780336 -112003217 + MLT1F LTR MaLR 46 98 -444 2342 113 33 33 chr11 38780336 38780700 -112002853 - THE1B LTR MaLR 0 364 1 1703 183 143 36 chr11 38780700 38781086 -112002467 + MLT1F LTR MaLR 98 540 -2 241 195 0 0 chr11 38781088 38781129 -112002424 - L2 LINE L2 -37 3276 3236 2981 122 4 9 chr11 38781129 38781587 -112001966 - MER1A DNA MER1_type 0 529 74 323 377 55 5 chr11 38781589 38781788 -112001765 - L2 LINE L2 -278 3035 2827 2316 43 0 4 chr11 38783054 38783368 -112000185 - AluY SINE Alu 0 313 1 459 235 83 8 chr11 38783480 38783612 -111999941 + LTR37B LTR ERV1 10 151 -317 7503 28 0 3 chr11 38784587 38785687 -111997866 - L1PA4 LINE L1 -3 6152 5057 403 293 94 9 chr11 38786254 38786466 -111997087 - L1ME LINE L1 -351 5770 5541 2110 102 3 35 chr11 38787011 38787324 -111996229 - AluSx SINE Alu -9 303 1 329 243 90 34 chr11 38787613 38787672 -111995881 - L1MC4 LINE L1 -146 7896 7842 2018 155 36 36 chr11 38787672 38787708 -111995845 + THE1B LTR MaLR 3 38 -326 2148 117 3 0 chr11 38787708 38788006 -111995547 - AluSp SINE Alu -14 299 1 2018 155 36 36 chr11 38788006 38788331 -111995222 + THE1B LTR MaLR 37 364 0 11970 90 2 1 chr11 38788331 38789909 -111993644 + THE1B-int LTR MaLR 1 1580 0 2284 123 22 25 chr11 38789909 38790274 -111993279 + THE1B LTR MaLR 1 364 0 329 243 90 34 chr11 38790274 38790389 -111993164 - L1MC4 LINE L1 -199 7843 7710 1738 199 133 77 chr11 38790493 38791237 -111992316 - L1MD1 LINE L1 -5 6631 5825 1576 200 0 13 chr11 38791237 38791537 -111992016 - AluJb SINE Alu -16 296 1 1738 199 133 77 chr11 38791537 38791711 -111991842 - L1MD1 LINE L1 -811 5825 5662 309 181 32 11 chr11 38791738 38791832 -111991721 + CT-rich Low_complexity Low_complexity 1 96 0 2182 228 44 37 chr11 38791849 38792691 -111990862 - L1MD1 LINE L1 -1194 5346 4499 421 254 100 0 chr11 38792721 38792851 -111990702 - L1MD1 LINE L1 -2275 4265 4123 * 8264 67 7 1 chr11 38792850 38794768 -111988785 - L1PA6 LINE L1 -20 6134 4203 * 11930 82 6 3 chr11 38794752 38796487 -111987066 + L1P LINE L1 2498 4237 -1909 4102 213 82 35 chr11 38796480 38798536 -111985017 - L1MD1 LINE L1 -2406 4134 1989 * 21 36 0 0 chr11 38799100 38799128 -111984425 + AT_rich Low_complexity Low_complexity 1 28 0 1168 218 103 39 chr11 38799272 38799707 -111983846 + MER44D DNA MER2_type 9 526 -79 2460 198 19 13 chr11 38799738 38800207 -111983346 + MER70A LTR ERVL 1 472 0 398 307 46 67 chr11 38800310 38800548 -111983005 - L1 LINE L1 -1938 4208 3976 27 0 0 0 chr11 38800576 38800603 -111982950 + AT_rich Low_complexity Low_complexity 1 27 0 28 48 0 0 chr11 38800837 38800879 -111982674 + AT_rich Low_complexity Low_complexity 1 42 0 232 200 67 78 chr11 38801005 38801095 -111982458 - L2 LINE L2 -66 3247 3159 618 164 52 8 chr11 38801124 38801258 -111982295 + MLT1I LTR MaLR 19 158 -251 937 156 45 22 chr11 38801295 38801474 -111982079 - MLT1H LTR MaLR -366 183 1 326 337 99 40 chr11 38801487 38801882 -111981671 - L1 LINE L1 -3044 3102 2685 1959 115 0 4 chr11 38802232 38802493 -111981060 + AluSx SINE Alu 26 285 -27 218 31 0 31 chr11 38802496 38802528 -111981025 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 657 251 122 55 chr11 38802959 38803362 -111980191 + L1ME3A LINE L1 5727 6156 -14 47 61 0 0 chr11 38803418 38803500 -111980053 + AT_rich Low_complexity Low_complexity 1 82 0 2512 51 0 0 chr11 38803508 38803803 -111979750 - AluY SINE Alu -16 295 1 1203 146 19 108 chr11 38803908 38804231 -111979322 + L1MA10 LINE L1 6030 6323 -11 343 301 39 86 chr11 38804323 38804685 -111978868 - HAL1 LINE L1 -1048 1459 1115 1435 192 63 42 chr11 38806309 38806689 -111976864 + MLT1B LTR MaLR 3 390 0 1977 154 24 0 chr11 38806754 38807052 -111976501 - AluSx SINE Alu -7 305 1 2264 173 17 42 chr11 38807361 38807667 -111975886 + MER65C LTR ERV1 1 292 -169 2406 77 0 6 chr11 38807667 38807980 -111975573 - AluY SINE Alu 0 311 1 2264 173 17 42 chr11 38807980 38808146 -111975407 + MER65C LTR ERV1 292 461 0 296 268 12 65 chr11 38808628 38808796 -111974757 - MER113 DNA MER1_type? -34 487 329 380 252 22 7 chr11 38809481 38809620 -111973933 - MER113 DNA MER1_type? -355 166 26 613 154 8 0 chr11 38811090 38811207 -111972346 - L1MC/D LINE L1 -532 5710 5593 475 221 31 0 chr11 38811226 38811353 -111972200 - L1MC3 LINE L1 -25 7760 7630 233 65 0 0 chr11 38811353 38811384 -111972169 - L1MDa LINE L1 -4534 2006 1976 642 250 167 23 chr11 38811390 38811690 -111971863 + MLT1D LTR MaLR 8 350 -155 569 278 90 48 chr11 38811803 38811955 -111971598 - L1MC4a LINE L1 -1834 5974 5830 1752 128 103 34 chr11 38811955 38812306 -111971247 + THE1C LTR MaLR 1 375 0 569 278 90 48 chr11 38812306 38812509 -111971044 - L1MC4a LINE L1 -1978 5830 5604 1488 196 84 25 chr11 38812509 38812867 -111970686 + MLT1B LTR MaLR 5 383 -7 281 297 0 0 chr11 38812872 38812946 -111970607 - L1MC4a LINE L1 -2201 5607 5534 8317 107 34 2 chr11 38813045 38814395 -111969158 - L1PA7 LINE L1 -3167 2979 1587 17224 81 14 2 chr11 38814397 38817551 -111966002 + L1PA7 LINE L1 2983 6154 0 663 318 47 33 chr11 38817961 38818389 -111965164 - MLT1K LTR MaLR 0 588 155 1733 139 24 0 chr11 38818752 38819040 -111964513 - MLT1B LTR MaLR 0 390 96 41062 29 22 1 chr11 38819044 38825068 -111958485 - L1HS LINE L1 -2 6153 2 601 100 55 36 chr11 38825068 38825178 -111958375 - MLT1B LTR MaLR -278 112 1 5607 207 42 21 chr11 38825446 38827660 -111955893 - L1 LINE L1 -3172 4036 1708 1561 251 27 68 chr11 38827784 38828417 -111955136 - L1 LINE L1 -6587 622 16 921 248 84 36 chr11 38828890 38829330 -111954223 + MLT2B1 LTR ERVL 13 520 0 587 234 184 45 chr11 38829353 38829597 -111953956 - L2 LINE L2 -345 2969 2692 452 291 74 0 chr11 38829597 38829745 -111953808 - L2 LINE L2 -801 2513 2355 545 321 38 10 chr11 38829769 38829978 -111953575 - MIR SINE MIR -44 218 4 446 211 9 9 chr11 38830133 38830242 -111953311 - MLT1B LTR MaLR 0 390 282 552 186 0 0 chr11 38830249 38830346 -111953207 + MLT2B2 LTR ERVL 350 446 -69 745 168 0 105 chr11 38830346 38830555 -111952998 - MLT1B LTR MaLR -112 278 92 1810 171 20 9 chr11 38830557 38830968 -111952585 + MLT2B1 LTR ERVL 1 462 -53 21 36 0 0 chr11 38831061 38831089 -111952464 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr11 38831127 38831162 -111952391 + AT_rich Low_complexity Low_complexity 1 35 0 385 351 53 18 chr11 38832355 38832526 -111951027 + MIR3 SINE MIR 16 192 -16 195 42 0 0 chr11 38833513 38833537 -111950016 + (GA)n Simple_repeat Simple_repeat 2 25 0 485 298 190 0 chr11 38834557 38834762 -111948791 + MIR SINE MIR 4 247 -15 181 321 214 0 chr11 38834769 38834881 -111948672 - MIR SINE MIR -105 157 22 388 316 53 38 chr11 38835013 38835222 -111948331 - MIR SINE MIR -10 252 41 221 272 185 56 chr11 38835998 38836160 -111947393 + MER5A DNA MER1_type 1 183 -6 358 318 56 49 chr11 38837112 38837379 -111946174 - L1ME4a LINE L1 -14 6107 5839 429 289 43 65 chr11 38837430 38837800 -111945753 - L1ME4a LINE L1 -312 5809 5448 2908 129 4 2 chr11 38837894 38838493 -111945060 - L1M1 LINE L1 -591 5714 5114 1995 142 0 10 chr11 38839051 38839346 -111944207 - AluSx SINE Alu -17 295 4 256 302 155 17 chr11 38840361 38840477 -111943076 - L2 LINE L2 -3 3310 3179 24 53 0 0 chr11 38840626 38840664 -111942889 + AT_rich Low_complexity Low_complexity 1 38 0 196 309 85 32 chr11 38844942 38845036 -111938517 - L2 LINE L2 -2111 1203 1105 366 312 143 13 chr11 38845053 38845207 -111938346 - MIR SINE MIR -69 193 20 22 56 0 0 chr11 38847201 38847237 -111936316 + AT_rich Low_complexity Low_complexity 1 36 0 2541 70 0 3 chr11 38847494 38847806 -111935747 - AluY SINE Alu 0 311 1 2125 198 42 2 chr11 38847806 38848216 -111935337 - MSTB LTR MaLR 0 426 1 8787 169 28 14 chr11 38848216 38849844 -111933709 - MSTB-int LTR MaLR 0 1651 1 1209 189 14 5 chr11 38849844 38850196 -111933357 - MSTB LTR MaLR 0 428 1 228 246 174 0 chr11 38850227 38850296 -111933257 - MIR SINE MIR -105 103 23 315 294 96 22 chr11 38850303 38850439 -111933114 - MIR SINE MIR 0 262 117 425 297 72 63 chr11 38850868 38851312 -111932241 - L2 LINE L2 -8 3305 2858 421 350 91 52 chr11 38853019 38853625 -111929928 - L2 LINE L2 -4 3268 2565 1937 153 51 20 chr11 38853638 38853991 -111929562 - THE1B LTR MaLR 0 364 1 811 276 62 58 chr11 38854096 38854530 -111929023 + MLT1J2 LTR MaLR 1 436 -14 180 0 0 0 chr11 38854637 38854657 -111928896 + (TC)n Simple_repeat Simple_repeat 2 21 0 306 125 0 0 chr11 38854657 38854705 -111928848 + (TG)n Simple_repeat Simple_repeat 2 49 0 206 340 20 50 chr11 38854717 38854817 -111928736 - L2 LINE L2 -16 3297 3201 206 370 102 24 chr11 38854956 38855083 -111928470 - L2 LINE L2 0 3272 3136 1475 223 3 13 chr11 38855284 38855594 -111927959 + AluJo SINE Alu 6 312 0 274 255 41 165 chr11 38856573 38856840 -111926713 - L2 LINE L2 -219 3053 2820 285 359 57 6 chr11 38857387 38857546 -111926007 + L2 LINE L2 2813 2979 -293 778 322 56 32 chr11 38857549 38857981 -111925572 + MARNA DNA Mariner 53 494 -92 267 31 0 0 chr11 38858119 38858151 -111925402 + (CA)n Simple_repeat Simple_repeat 2 33 0 27 0 0 0 chr11 38858511 38858538 -111925015 + AT_rich Low_complexity Low_complexity 1 27 0 282 29 0 0 chr11 38859027 38859062 -111924491 + (CA)n Simple_repeat Simple_repeat 2 36 0 218 208 0 0 chr11 38859416 38859464 -111924089 + (TA)n Simple_repeat Simple_repeat 1 48 0 1023 198 47 22 chr11 38862952 38863184 -111920369 + MIR SINE MIR 2 239 -23 515 217 35 0 chr11 38863433 38863548 -111920005 + MIR SINE MIR 138 256 -6 201 39 0 0 chr11 38863640 38863666 -111919887 + (T)n Simple_repeat Simple_repeat 1 26 0 485 271 8 131 chr11 38866118 38866362 -111917191 + MIR SINE MIR 1 214 -48 2322 109 0 0 chr11 38866418 38866722 -111916831 - AluSx SINE Alu -8 304 1 289 220 275 0 chr11 38866865 38866974 -111916579 + MIR SINE MIR 98 236 -26 248 250 171 0 chr11 38867624 38867700 -111915853 - L2 LINE L2 -17 3296 3208 2023 165 3 9 chr11 38867703 38868042 -111915511 + MER1B DNA MER1_type 1 337 0 1529 212 10 6 chr11 38869068 38869379 -111914174 - AluJb SINE Alu 0 312 1 252 325 0 8 chr11 38870912 38871032 -111912521 - L1MD2 LINE L1 -37 6320 6087 2197 128 0 0 chr11 38871068 38871366 -111912187 + AluSq SINE Alu 1 298 -15 201 264 19 0 chr11 38872255 38872308 -111911245 + L3 LINE CR1 1521 1574 -3 1841 85 4 16 chr11 38873605 38873851 -111909702 + AluSq SINE Alu 1 243 -70 198 0 0 0 chr11 38873869 38873891 -111909662 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 490 184 27 116 chr11 38874712 38874751 -111908802 - MIR SINE MIR -69 193 152 1212 230 33 12 chr11 38874751 38875081 -111908472 - MER46C DNA MER2_type -1 337 1 490 184 27 116 chr11 38875081 38875099 -111908454 - MIR SINE MIR -110 152 134 2041 113 4 0 chr11 38875099 38875373 -111908180 - AluSp SINE Alu -11 302 28 490 184 27 116 chr11 38875373 38875461 -111908092 - MIR SINE MIR -128 134 60 7042 59 2 1 chr11 38875824 38876778 -111906775 + L1PA5 LINE L1 3235 4189 -1957 1393 50 0 0 chr11 38876776 38876974 -111906579 - L1P LINE L1 -2710 3436 3239 * 9554 45 1 0 chr11 38876983 38878929 -111904624 + L1PA5 LINE L1 4205 6151 -3 1407 223 107 51 chr11 38878936 38879534 -111904019 + LTR9B LTR ERV1 13 612 0 209 246 29 29 chr11 38879750 38879819 -111903734 - L2 LINE L2 -543 2771 2703 587 259 148 7 chr11 38879919 38880224 -111903329 - HAL1 LINE L1 -1044 1463 1116 2160 113 23 0 chr11 38880909 38881210 -111902343 - AluSg SINE Alu -2 308 1 238 380 31 12 chr11 38881455 38881618 -111901935 + L2 LINE L2 2918 3083 -189 2383 86 3 3 chr11 38882207 38882511 -111901042 - AluSx SINE Alu -8 304 1 678 24 0 0 chr11 38882629 38882712 -111900841 - L1PA5 LINE L1 -2 6152 6070 881 287 104 23 chr11 38884815 38885419 -111898134 - L2 LINE L2 -222 3091 2444 367 218 15 105 chr11 38885815 38885948 -111897605 + MER5C DNA MER1_type 1 121 -203 462 149 9 47 chr11 38885972 38886079 -111897474 + MER5C DNA MER1_type 222 324 0 2232 26 7 0 chr11 38886193 38886462 -111897091 - L1PA3 LINE L1 0 6155 5885 341 323 11 0 chr11 38886706 38886799 -111896754 - MIR3 SINE MIR -3 205 112 407 341 18 6 chr11 38887478 38887642 -111895911 + L3 LINE CR1 1050 1215 -362 297 354 47 24 chr11 38887704 38887831 -111895722 - L2 LINE L2 -16 3256 3127 623 308 90 11 chr11 38887999 38888265 -111895288 + L3 LINE CR1 1215 1501 -76 232 306 111 0 chr11 38888302 38888374 -111895179 + MIR SINE MIR 13 92 -170 188 293 0 0 chr11 38888408 38888449 -111895104 + L2 LINE L2 3254 3294 -19 191 328 15 15 chr11 38888463 38888530 -111895023 + L3 LINE CR1 1509 1575 -2 226 362 53 0 chr11 38889190 38889284 -111894269 - MIR3 SINE MIR -7 201 103 547 318 123 0 chr11 38889326 38889537 -111894016 + MIR SINE MIR 23 259 -3 218 81 27 0 chr11 38889542 38889579 -111893974 + (CTG)n Simple_repeat Simple_repeat 1 38 0 269 263 187 40 chr11 38889651 38889849 -111893704 + Charlie8 DNA MER1_type 35 261 -2156 426 252 126 38 chr11 38890017 38890176 -111893377 + MER5B DNA MER1_type 1 173 -5 410 333 58 62 chr11 38892134 38892410 -111891143 - L2 LINE L2 0 3272 2998 10217 24 3 0 chr11 38892654 38894635 -111888918 - L1PA2 LINE L1 0 6155 4171 716 171 0 0 chr11 38895485 38895608 -111887945 + MER3 DNA MER1_type 48 123 -86 1439 163 29 3 chr11 38895615 38895928 -111887625 + MER3 DNA MER1_type 2234 2554 0 309 162 0 0 chr11 38895928 38895996 -111887557 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 185 224 0 105 chr11 38896053 38896129 -111887424 + MER5B DNA MER1_type 2 69 -109 308 289 41 10 chr11 38896186 38896283 -111887270 + MER5A DNA MER1_type 90 189 0 339 295 36 9 chr11 38896463 38896575 -111886978 - MIR SINE MIR -67 195 81 401 250 18 122 chr11 38896689 38896853 -111886700 - MIR SINE MIR -21 241 95 993 130 62 6 chr11 38896853 38897015 -111886538 + MLT1B LTR MaLR 1 171 -219 303 244 76 76 chr11 38897184 38897315 -111886238 + L2 LINE L2 3180 3310 -3 257 220 0 0 chr11 38897782 38897832 -111885721 - MIR SINE MIR -77 131 82 22 70 0 0 chr11 38899635 38899678 -111883875 + AT_rich Low_complexity Low_complexity 1 43 0 295 286 48 12 chr11 38900426 38900510 -111883043 - L2 LINE L2 -31 3241 3155 250 274 155 60 chr11 38901255 38901423 -111882130 + MIR SINE MIR 31 214 -48 269 326 51 51 chr11 38901832 38901970 -111881583 - MER5A DNA MER1_type -12 177 40 225 154 0 0 chr11 38902703 38902742 -111880811 + (TA)n Simple_repeat Simple_repeat 1 39 0 223 167 0 0 chr11 38902933 38902975 -111880578 + (CA)n Simple_repeat Simple_repeat 1 42 0 942 290 121 19 chr11 38902992 38903413 -111880140 + MLT1J LTR MaLR 45 508 -3 837 248 64 41 chr11 38903413 38903707 -111879846 + MLT1J LTR MaLR 209 509 -2 717 270 53 0 chr11 38903800 38903989 -111879564 + MIR SINE MIR 12 210 -52 21 36 0 0 chr11 38903991 38904019 -111879534 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 38904073 38904095 -111879458 + AT_rich Low_complexity Low_complexity 1 22 0 545 260 77 24 chr11 38904165 38904373 -111879180 - L1ME4a LINE L1 -228 5893 5675 575 247 145 44 chr11 38904373 38904821 -111878732 - L2 LINE L2 -25 3288 2771 245 380 20 10 chr11 38905105 38905205 -111878348 + L2 LINE L2 3149 3249 -23 1963 211 37 5 chr11 38905659 38906095 -111877458 + L1MB7 LINE L1 5724 6173 -11 350 323 17 83 chr11 38907021 38907321 -111876232 + L2 LINE L2 2919 3198 -74 846 269 9 14 chr11 38910758 38910974 -111872579 + MIR SINE MIR 9 223 -39 29 28 0 0 chr11 38910995 38911031 -111872522 + AT_rich Low_complexity Low_complexity 1 36 0 304 356 40 27 chr11 38911031 38911253 -111872300 + L2 LINE L2 2194 2418 -896 306 251 228 6 chr11 38911311 38911478 -111872075 + L1ME LINE L1 5650 5853 -268 301 203 0 17 chr11 38911766 38911825 -111871728 + L2 LINE L2 3250 3307 -6 202 363 106 9 chr11 38913188 38913301 -111870252 - MIR SINE MIR -63 145 22 22 35 0 0 chr11 38915541 38915570 -111867983 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 38915766 38915787 -111867766 + AT_rich Low_complexity Low_complexity 1 21 0 434 311 0 46 chr11 38916393 38916544 -111867009 - MER5A DNA MER1_type -38 151 8 1941 124 0 60 chr11 38916728 38917042 -111866511 - AluSx SINE Alu -17 295 1 1805 154 114 40 chr11 38918270 38918672 -111864881 - MSTB1 LTR MaLR 0 432 1 317 290 0 0 chr11 38918872 38918965 -111864588 - L1ME LINE L1 -5947 123 31 5466 178 69 21 chr11 38919029 38920268 -111863285 + Charlie1 DNA MER1_type 1424 2722 -39 4848 43 0 0 chr11 38920319 38920930 -111862623 - L1P LINE L1 -3199 2947 2337 16366 69 1 1 chr11 38920930 38923908 -111859645 + L1PA5 LINE L1 3221 6161 0 200 344 16 16 chr11 38924808 38924872 -111858681 - L2 LINE L2 -14 3299 3236 330 267 216 11 chr11 38925533 38925709 -111857844 + MIR SINE MIR 3 214 -48 576 306 57 42 chr11 38927392 38927775 -111855778 - MLT1J2 LTR MaLR 0 450 62 1212 148 88 0 chr11 38928769 38928986 -111854567 + MER46A DNA MER2_type 1 236 0 776 90 37 8 chr11 38929265 38929399 -111854154 - L1MA5 LINE L1 0 6300 6163 7843 52 5 0 chr11 38929462 38931205 -111852348 - L1PA5 LINE L1 -8 6146 4390 2784 98 20 0 chr11 38931307 38931707 -111851846 - L1PA5 LINE L1 -1920 4226 3819 305 250 0 0 chr11 38932627 38932687 -111850866 + L2 LINE L2 3208 3267 -5 245 326 141 61 chr11 38932762 38933124 -111850429 + L2 LINE L2 1633 2023 -1291 243 114 0 0 chr11 38933146 38933190 -111850363 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 632 27 0 0 chr11 38933190 38933263 -111850290 - L1PA5 LINE L1 -24 6130 6058 196 333 0 17 chr11 38933440 38933500 -111850053 + L2 LINE L2 2234 2292 -1022 254 222 212 20 chr11 38933774 38933873 -111849680 + L2 LINE L2 3196 3313 0 526 347 97 56 chr11 38933970 38934382 -111849171 + L2 LINE L2 2841 3269 -3 29 0 0 0 chr11 38934617 38934646 -111848907 + AT_rich Low_complexity Low_complexity 1 29 0 2052 140 0 0 chr11 38935114 38935406 -111848147 + AluSx SINE Alu 1 292 -20 390 272 147 7 chr11 38936441 38936577 -111846976 + MIR SINE MIR 32 186 -76 535 201 45 15 chr11 38938860 38938994 -111844559 - L1MC1 LINE L1 -1 6332 6195 198 0 0 0 chr11 38939033 38939055 -111844498 + (TG)n Simple_repeat Simple_repeat 1 22 0 2788 102 39 2 chr11 38939055 38939494 -111844059 - L1MB1 LINE L1 -11 6157 5703 232 289 13 0 chr11 38939498 38939574 -111843979 + (TG)n Simple_repeat Simple_repeat 2 78 0 314 311 185 30 chr11 38939658 38939793 -111843760 - L2 LINE L2 -1 3271 3116 297 209 109 64 chr11 38939794 38939904 -111843649 + MER3 DNA MER1_type 48 162 -47 726 174 0 0 chr11 38939913 38940045 -111843508 + MER3 DNA MER1_type 2234 2365 0 * 1893 172 88 30 chr11 38940042 38940078 -111843475 - MLT2A2 LTR ERVL 0 554 522 468 51 0 0 chr11 38940078 38940137 -111843416 + (TA)n Simple_repeat Simple_repeat 2 60 0 1893 172 88 30 chr11 38940137 38940615 -111842938 - MLT2A2 LTR ERVL -32 522 1 802 183 102 24 chr11 38940617 38940863 -111842690 + MER3 DNA MER1_type 2359 2623 0 232 349 108 28 chr11 38940948 38941420 -111842133 - L2 LINE L2 -212 3060 2554 1600 156 38 35 chr11 38941600 38941889 -111841664 - AluJo SINE Alu -22 290 1 1566 170 0 4 chr11 38942754 38943001 -111840552 - AluJo SINE Alu -64 248 3 656 349 77 25 chr11 38943369 38943813 -111839740 + L2 LINE L2 2805 3271 -1 1678 236 81 44 chr11 38944173 38944791 -111838762 + LTR9B LTR ERV1 4 644 0 400 121 17 0 chr11 38944836 38944894 -111838659 + HUERS-P3b LTR ERV1 38 96 -7322 647 217 76 19 chr11 38944897 38945054 -111838499 + HUERS-P3b LTR ERV1 409 574 -6844 * 6444 154 24 34 chr11 38945049 38946192 -111837361 + HUERS-P3b LTR ERV1 747 1877 -5541 3467 72 88 22 chr11 38946191 38946363 -111837190 + HUERS-P3b LTR ERV1 2111 2270 -5148 * 2331 100 0 0 chr11 38946363 38946662 -111836891 + AluSg SINE Alu 1 299 -11 3467 72 88 22 chr11 38946662 38946988 -111836565 + HUERS-P3b LTR ERV1 2270 2642 -4776 2259 196 45 2 chr11 38946988 38947411 -111836142 - LTR8 LTR ERV1 -250 441 1 7895 159 56 52 chr11 38947411 38948394 -111835159 + HUERS-P3 LTR ERV1 1008 1985 -5433 2105 106 14 0 chr11 38948394 38948678 -111834875 + AluSx SINE Alu 1 288 -24 7895 159 56 52 chr11 38948678 38949639 -111833914 + HUERS-P3 LTR ERV1 1985 2940 -4478 2367 100 0 0 chr11 38949639 38949939 -111833614 - AluY SINE Alu -11 300 1 7895 159 56 52 chr11 38949939 38951149 -111832404 + HUERS-P3 LTR ERV1 2940 4143 -3275 2170 87 3 7 chr11 38951149 38951460 -111832093 - AluSp SINE Alu 0 310 1 7895 159 56 52 chr11 38951460 38951624 -111831929 + HUERS-P3 LTR ERV1 4143 6945 -473 1353 197 4 16 chr11 38951894 38952186 -111831367 + HUERS-P3 LTR ERV1 7163 8919 0 23892 90 8 9 chr11 38952217 38955185 -111828368 + L1P LINE L1 5 2971 -3175 2929 12 0 3 chr11 38955185 38955504 -111828049 - AluYb8 SINE Alu 0 318 1 23892 90 8 9 chr11 38955504 38955796 -111827757 + L1P LINE L1 2971 3262 -2884 283 358 108 0 chr11 38956503 38956679 -111826874 + MIR SINE MIR 34 228 -34 397 198 72 63 chr11 38956916 38957027 -111826526 - MER103 DNA DNA -41 125 14 195 204 0 0 chr11 38957030 38957074 -111826479 + CT-rich Low_complexity Low_complexity 4 47 0 436 217 252 0 chr11 38957311 38957426 -111826127 - MER5A DNA MER1_type -6 183 40 367 246 183 48 chr11 38957414 38957540 -111826013 + MER5A DNA MER1_type 47 189 0 * 806 180 197 11 chr11 38957547 38957730 -111825823 - MER20 DNA MER1_type 0 219 3 612 250 70 0 chr11 38957929 38958085 -111825468 - MIR SINE MIR -21 241 75 240 250 0 28 chr11 38958762 38958834 -111824719 + L3 LINE CR1 792 861 -716 911 296 0 9 chr11 38958903 38959136 -111824417 - MIR SINE MIR -19 243 13 1349 186 73 36 chr11 38960414 38960715 -111822838 - AluJo SINE Alu 0 312 1 441 313 27 12 chr11 38960859 38961026 -111822527 - MIR SINE MIR -42 166 2 550 93 0 0 chr11 38961111 38961186 -111822367 - MADE1 DNA Mariner -5 75 1 2121 143 14 172 chr11 38961341 38961807 -111821746 + LTR32 LTR ERVL 1 367 -104 2285 56 0 24 chr11 38961807 38962134 -111821419 + AluY SINE Alu 1 320 0 2121 143 14 172 chr11 38962134 38962225 -111821328 + LTR32 LTR ERVL 367 471 0 3413 181 25 32 chr11 38962913 38963604 -111819949 - MER67C LTR ERV1 -24 686 1 1124 223 103 107 chr11 38964403 38964994 -111818559 + LTR49 LTR ERV1 5 593 -2 3192 38 8 5 chr11 38965538 38965908 -111817645 - L1PA8 LINE L1 0 6172 5802 515 57 14 0 chr11 38965908 38965978 -111817575 + L1PA8 LINE L1 5728 5798 -374 2031 89 0 4 chr11 38965979 38966248 -111817305 - AluY SINE Alu -1 310 43 452 293 102 18 chr11 38968966 38969187 -111814366 - MIR SINE MIR -23 239 4 224 343 48 0 chr11 38969298 38969403 -111814150 + L2 LINE L2 3180 3289 -24 1049 229 5 0 chr11 38970969 38971157 -111812396 - MER5A DNA MER1_type 0 189 1 351 263 172 0 chr11 38971362 38971516 -111812037 + MIR SINE MIR 21 200 -62 353 261 11 23 chr11 38972196 38972284 -111811269 + MIR3 SINE MIR 81 167 -41 180 0 0 0 chr11 38973116 38973136 -111810417 + (T)n Simple_repeat Simple_repeat 1 20 0 219 114 0 0 chr11 38973616 38973651 -111809902 + (GA)n Simple_repeat Simple_repeat 2 36 0 210 37 0 0 chr11 38975068 38975095 -111808458 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 299 312 116 98 chr11 38975097 38975536 -111808017 - L2 LINE L2 -14 3258 2812 2180 116 0 0 chr11 38975648 38975940 -111807613 + AluSg SINE Alu 1 292 -18 231 319 69 0 chr11 38976354 38976426 -111807127 - L2 LINE L2 -54 3218 3142 241 322 61 9 chr11 38976534 38976649 -111806904 - L2 LINE L2 -571 2743 2623 2060 135 0 13 chr11 38977189 38977492 -111806061 + AluSx SINE Alu 5 303 -9 558 242 230 17 chr11 38977513 38977691 -111805862 - MIR SINE MIR -41 221 6 2191 164 63 0 chr11 38979042 38979409 -111804144 + MLT1B LTR MaLR 1 390 0 350 222 11 22 chr11 38980243 38980333 -111803220 + MER117 DNA MER1_type 2 90 -107 2387 72 7 3 chr11 38980468 38980761 -111802792 + AluY SINE Alu 1 294 -17 872 100 23 8 chr11 38980761 38980885 -111802668 - L1PB2 LINE L1 -6 6145 6020 228 321 143 0 chr11 38980981 38981065 -111802488 + Charlie8 DNA MER1_type 132 227 -2190 279 356 60 42 chr11 38981531 38981978 -111801575 + L2 LINE L2 2250 2777 -537 2232 96 10 3 chr11 38982468 38982771 -111800782 - AluSg SINE Alu -5 305 1 958 189 74 0 chr11 38982872 38983062 -111800491 - MER3 DNA MER1_type -1 208 5 183 80 0 0 chr11 38983732 38983757 -111799796 + (TAA)n Simple_repeat Simple_repeat 3 27 0 217 305 32 21 chr11 38983757 38983852 -111799701 - MIR SINE MIR -8 254 159 336 256 120 0 chr11 38983906 38984039 -111799514 + MIR SINE MIR 114 262 0 2351 93 0 7 chr11 38984047 38984349 -111799204 - AluSp SINE Alu -13 300 1 213 315 8 92 chr11 38984349 38984479 -111799074 - MIR SINE MIR -111 151 33 224 356 102 8 chr11 38984882 38985000 -111798553 - L2 LINE L2 -2 3270 3142 223 323 138 24 chr11 38985280 38985447 -111798106 - L2 LINE L2 -527 2787 2602 240 298 18 0 chr11 38985558 38985615 -111797938 - L2 LINE L2 -21 3292 3235 494 285 149 42 chr11 38986989 38987277 -111796276 + MLT1J2 LTR MaLR 57 375 -75 1022 215 132 87 chr11 38987285 38987709 -111795844 - LTR50 LTR ERVL -352 443 1 319 138 77 31 chr11 38987709 38987770 -111795783 + MLT1J2 LTR MaLR 366 429 -21 1652 164 64 0 chr11 38988148 38988429 -111795124 - AluJo SINE Alu -13 299 1 533 203 61 108 chr11 38988457 38988669 -111794884 - L1MC3 LINE L1 -829 6956 6755 1234 253 98 35 chr11 38988729 38989180 -111794373 + L2 LINE L2 2827 3305 -8 333 335 61 31 chr11 38989234 38989590 -111793963 + L2 LINE L2 2692 3071 -201 1310 218 47 66 chr11 38989676 38990057 -111793496 - MLT1A2 LTR MaLR 0 374 1 210 291 239 8 chr11 38991476 38991593 -111791960 + MIR SINE MIR 119 262 0 580 310 22 5 chr11 38991782 38991966 -111791587 - MER5A DNA MER1_type -1 188 2 607 316 63 26 chr11 38992018 38992586 -111790967 - MLT2E LTR ERVL 0 628 1 283 176 29 73 chr11 38993037 38993061 -111790492 + MLT1D LTR MaLR 1 25 -480 2165 148 13 48 chr11 38993061 38993438 -111790115 - THE1B LTR MaLR 0 364 1 283 176 29 73 chr11 38993438 38993481 -111790072 + MLT1D LTR MaLR 25 65 -440 28 0 0 0 chr11 38993496 38993524 -111790029 + AT_rich Low_complexity Low_complexity 1 28 0 857 199 28 25 chr11 38993528 38993884 -111789669 + MLT1D LTR MaLR 61 502 -3 387 0 0 0 chr11 38993895 38993938 -111789615 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2331 133 42 31 chr11 38994504 38994888 -111788665 - MLT1B LTR MaLR 0 390 3 615 249 127 21 chr11 38995354 38995591 -111787962 + MLT1G LTR MaLR 15 276 -314 402 267 8 17 chr11 38995599 38995719 -111787834 + MLT1G LTR MaLR 437 555 0 559 330 106 4 chr11 38996253 38996489 -111787064 + MIR SINE MIR 2 261 -1 290 356 96 0 chr11 38996548 38996652 -111786901 + L2 LINE L2 3199 3312 -1 365 314 19 0 chr11 38997280 38997385 -111786168 - MIR SINE MIR -2 260 154 974 222 11 0 chr11 38997617 38997797 -111785756 + MER5A DNA MER1_type 3 184 -5 971 146 48 0 chr11 38998021 38998186 -111785367 + L1PBa LINE L1 28 200 -6663 10487 153 38 32 chr11 38998186 39000581 -111782972 + L1PBa LINE L1 634 3013 -3849 2100 125 26 3 chr11 39000581 39000886 -111782667 + AluSx SINE Alu 1 312 0 10487 153 38 32 chr11 39000886 39001122 -111782431 + L1PBa LINE L1 3013 3246 -3616 733 118 0 0 chr11 39001122 39001215 -111782338 + AluS SINE Alu 3 95 -217 1950 138 31 0 chr11 39001215 39001504 -111782049 + AluSx SINE Alu 1 298 -14 10487 153 38 32 chr11 39001504 39003066 -111780487 + L1PBa LINE L1 3245 5132 -1730 505 358 19 5 chr11 39003098 39003305 -111780248 + L2 LINE L2 2678 2887 -427 6649 185 39 17 chr11 39003321 39005005 -111778548 - L1M1 LINE L1 -4065 1263 10 323 320 53 27 chr11 39005013 39005163 -111778390 + L2 LINE L2 2896 3049 -223 768 236 136 48 chr11 39005188 39005519 -111778034 - MLT1G LTR MaLR -215 375 16 186 296 61 82 chr11 39005589 39005687 -111777866 + L2 LINE L2 3176 3271 -1 329 273 73 36 chr11 39005758 39005868 -111777685 + L2 LINE L2 3200 3313 0 330 342 58 89 chr11 39006523 39006767 -111776786 + L2 LINE L2 2246 2496 -818 462 292 7 0 chr11 39006767 39006904 -111776649 - MIR SINE MIR -2 260 123 330 342 58 89 chr11 39006904 39007231 -111776322 + L2 LINE L2 2496 2931 -383 791 256 49 34 chr11 39007235 39007501 -111776052 - L2 LINE L2 0 3313 3044 966 262 72 23 chr11 39007505 39007810 -111775743 - L2 LINE L2 -372 2942 2623 492 163 0 0 chr11 39008451 39008537 -111775016 - L1MA4 LINE L1 -2 6298 6213 554 167 10 0 chr11 39008537 39008633 -111774920 + L1MA4 LINE L1 5795 5891 -409 561 183 58 0 chr11 39009196 39009316 -111774237 + Charlie5 DNA MER1_type 1 127 -2485 * 1591 176 52 29 chr11 39009314 39009695 -111773858 + Charlie5 DNA MER1_type 2235 2624 0 1986 180 118 9 chr11 39010422 39010873 -111772680 + Charlie1b DNA MER1_type 1 500 -23 445 254 58 29 chr11 39010998 39011136 -111772417 - MER5A DNA MER1_type 0 189 48 415 314 41 37 chr11 39012167 39012438 -111771115 + MLT1K LTR MaLR 275 546 -42 2071 65 24 21 chr11 39012472 39012763 -111770790 - AluSx SINE Alu -20 292 1 477 244 191 12 chr11 39013540 39013582 -111769971 + MER3 DNA MER1_type 1 34 -175 2292 93 3 3 chr11 39013582 39013883 -111769670 - AluSg SINE Alu -9 301 1 477 244 191 12 chr11 39013883 39014008 -111769545 + MER3 DNA MER1_type 34 198 -11 194 365 82 12 chr11 39014123 39014208 -111769345 + MIR SINE MIR 24 114 -94 379 264 49 49 chr11 39015278 39015422 -111768131 + MER117 DNA MER1_type 1 144 -53 345 246 85 51 chr11 39015427 39015545 -111768008 + L2 LINE L2 3190 3311 -2 673 255 132 17 chr11 39015965 39016200 -111767353 - MIR SINE MIR 0 262 1 270 252 73 57 chr11 39016619 39016742 -111766811 - L3b LINE CR1 -140 1443 1319 333 196 0 0 chr11 39016885 39016941 -111766612 - MLT1E2 LTR MaLR 0 626 571 1452 184 54 0 chr11 39016945 39017206 -111766347 + AluJo SINE Alu 1 275 -37 506 305 6 18 chr11 39017320 39017484 -111766069 + MIR SINE MIR 3 164 -98 375 311 51 25 chr11 39017828 39018024 -111765529 - MLT1K LTR MaLR -379 209 9 269 341 96 18 chr11 39018571 39018738 -111764815 - MIR SINE MIR -81 181 2 22 0 0 0 chr11 39019652 39019674 -111763879 + AT_rich Low_complexity Low_complexity 1 22 0 2274 127 0 0 chr11 39020209 39020517 -111763036 - AluSx SINE Alu -2 310 3 917 178 18 18 chr11 39021409 39021578 -111761975 + MER58B DNA MER1_type 173 341 0 270 317 148 47 chr11 39021578 39021916 -111761637 - L2 LINE L2 -52 3220 2849 2248 117 0 0 chr11 39022113 39022412 -111761141 + AluSq SINE Alu 1 299 -14 2026 165 209 0 chr11 39022528 39022958 -111760595 + MLT2B1 LTR ERVL 1 520 0 22 0 0 0 chr11 39023095 39023117 -111760436 + AT_rich Low_complexity Low_complexity 1 22 0 199 283 0 17 chr11 39023144 39023204 -111760349 + L2 LINE L2 3214 3272 0 1785 197 44 87 chr11 39023969 39024016 -111759537 - MLT2B3 LTR ERVL -4 550 502 1051 188 181 56 chr11 39024016 39024320 -111759233 - MER2 DNA MER2_type -2 342 1 1785 197 44 87 chr11 39024320 39024845 -111758708 - MLT2B3 LTR ERVL -52 502 3 229 139 0 0 chr11 39025529 39025565 -111757988 - MIR SINE MIR -109 153 118 25 31 0 0 chr11 39026082 39026114 -111757439 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr11 39026248 39026270 -111757283 + AT_rich Low_complexity Low_complexity 1 22 0 2093 142 3 0 chr11 39026303 39026612 -111756941 + AluSx SINE Alu 1 310 -2 199 378 39 19 chr11 39026746 39026902 -111756651 + MIR SINE MIR 2 160 -102 25 53 0 18 chr11 39026937 39026975 -111756578 + AT_rich Low_complexity Low_complexity 1 39 -17 1004 58 0 0 chr11 39026975 39027095 -111756458 - L1MA1 LINE L1 -7 6295 6176 25 53 0 18 chr11 39027095 39027113 -111756440 + AT_rich Low_complexity Low_complexity 39 56 0 21 57 0 0 chr11 39027196 39027231 -111756322 + AT_rich Low_complexity Low_complexity 1 35 0 439 175 232 43 chr11 39027265 39027476 -111756077 - L1ME4a LINE L1 -67 6054 5804 1742 267 103 32 chr11 39028573 39029127 -111754426 + MLT1E LTR MaLR 1 593 0 2333 50 0 0 chr11 39030304 39030625 -111752928 - AluY SINE Alu 0 322 2 407 253 164 20 chr11 39030818 39030964 -111752589 + LTR67 LTR ERVL 383 549 -8 282 333 9 9 chr11 39032601 39032712 -111750841 - MIR3 SINE MIR -7 201 91 252 264 0 14 chr11 39032881 39032953 -111750600 + CT-rich Low_complexity Low_complexity 2 72 0 1030 214 27 41 chr11 39032987 39033207 -111750346 + MER20 DNA MER1_type 3 219 0 1194 284 145 20 chr11 39034540 39034995 -111748558 - LTR33 LTR ERVL -9 512 1 579 289 54 25 chr11 39035019 39035223 -111748330 + MIR SINE MIR 46 255 -7 923 296 109 35 chr11 39035657 39036062 -111747491 + LTR16A LTR ERVL 16 450 0 231 279 15 15 chr11 39036229 39036297 -111747256 + 7SK RNA RNA 46 113 -80 21 36 0 0 chr11 39038996 39039024 -111744529 + AT_rich Low_complexity Low_complexity 1 28 0 597 356 20 4 chr11 39039373 39039623 -111743930 + MIR SINE MIR 4 257 -5 327 244 168 0 chr11 39040552 39040671 -111742882 - MIR SINE MIR -12 250 112 * 2432 323 205 13 chr11 39040634 39042062 -111741491 + L2 LINE L2 1388 3164 -149 5349 78 34 1 chr11 39042062 39042767 -111740786 - L1PB2 LINE L1 -1 6150 5423 2432 323 205 13 chr11 39042767 39042951 -111740602 + L2 LINE L2 3164 3311 -2 297 0 0 0 chr11 39043864 39043897 -111739656 + (TA)n Simple_repeat Simple_repeat 1 33 0 1583 204 80 49 chr11 39044025 39044477 -111739076 + MLT1C LTR MaLR 1 466 -1 292 284 21 21 chr11 39044628 39044723 -111738830 + L2 LINE L2 2945 3039 -233 720 201 121 19 chr11 39044730 39044994 -111738559 + MER33 DNA MER1_type 6 296 -28 281 298 48 57 chr11 39045083 39045115 -111738438 + L2 LINE L2 3171 3202 -111 2328 89 0 22 chr11 39045115 39045430 -111738123 - AluSx SINE Alu -4 308 1 281 298 48 57 chr11 39045430 39045521 -111738032 + L2 LINE L2 3202 3293 -20 221 290 51 108 chr11 39046209 39046423 -111737130 - L2 LINE L2 -1 3271 3070 269 319 103 38 chr11 39046446 39046659 -111736894 + MIR SINE MIR 36 262 0 195 100 0 0 chr11 39047609 39047639 -111735914 + (GA)n Simple_repeat Simple_repeat 2 31 0 2314 98 0 0 chr11 39048018 39048314 -111735239 - AluSg SINE Alu -14 296 1 786 336 44 19 chr11 39048554 39048917 -111734636 - LTR16C LTR ERVL -4 487 116 435 63 0 0 chr11 39049720 39049783 -111733770 + (CA)n Simple_repeat Simple_repeat 1 63 0 300 253 235 24 chr11 39051374 39051544 -111732009 - MIR SINE MIR 0 262 57 236 213 16 0 chr11 39052019 39052080 -111731473 + MER103 DNA DNA 92 153 -13 1067 161 86 17 chr11 39052431 39052739 -111730814 + L1MA8 LINE L1 5966 6291 0 266 269 154 58 chr11 39052803 39053011 -111730542 - L2 LINE L2 0 3313 3086 360 315 55 33 chr11 39053301 39053482 -111730071 + MIR3 SINE MIR 11 195 -13 329 162 15 0 chr11 39054161 39054229 -111729324 + (TG)n Simple_repeat Simple_repeat 1 69 0 917 262 65 10 chr11 39054407 39054716 -111728837 + LTR16A LTR ERVL 113 438 -12 268 349 142 14 chr11 39054720 39054938 -111728615 + L2 LINE L2 2679 2924 -390 24 32 0 0 chr11 39054943 39054974 -111728579 + AT_rich Low_complexity Low_complexity 1 31 0 624 299 72 5 chr11 39055043 39055237 -111728316 - MIR SINE MIR 0 262 56 2621 156 21 28 chr11 39055382 39055915 -111727638 - L1MA9 LINE L1 -2 6310 5782 210 165 24 12 chr11 39056002 39056087 -111727466 + (TA)n Simple_repeat Simple_repeat 2 87 0 318 200 22 22 chr11 39056113 39056293 -111727260 + (TA)n Simple_repeat Simple_repeat 1 180 0 279 214 6 13 chr11 39056376 39056535 -111727018 + (TA)n Simple_repeat Simple_repeat 2 159 0 5738 65 1 0 chr11 39056566 39057334 -111726219 - L1PA7 LINE L1 0 6154 5386 1291 133 68 12 chr11 39057327 39057576 -111725977 - L1MA9 LINE L1 -536 5776 5514 * 206 316 89 0 chr11 39058018 39058097 -111725456 + MIR SINE MIR 119 204 -58 321 267 0 95 chr11 39058410 39058515 -111725038 - MIR SINE MIR -73 135 41 383 325 50 0 chr11 39058696 39058816 -111724737 + L2 LINE L2 3134 3259 -13 717 202 89 65 chr11 39059181 39059428 -111724125 - L2 LINE L2 0 3313 3061 12893 217 17 19 chr11 39059441 39062036 -111721517 - L1PA16 LINE L1 -9 7595 5010 1815 175 38 14 chr11 39062036 39062402 -111721151 - THE1C LTR MaLR 0 375 1 12893 217 17 19 chr11 39062402 39064446 -111719107 - L1PA16 LINE L1 -2594 5010 2964 184 300 0 17 chr11 39064497 39064557 -111718996 - L2 LINE L2 0 3313 3255 22 0 0 0 chr11 39064584 39064606 -111718947 + AT_rich Low_complexity Low_complexity 1 22 0 255 200 0 0 chr11 39064743 39064798 -111718755 - MLT2B2 LTR ERVL 0 515 461 2652 254 23 12 chr11 39064937 39065766 -111717787 - L1PA16 LINE L1 -4513 3068 2231 660 343 48 10 chr11 39066481 39066880 -111716673 - L1PA16 LINE L1 -7166 415 2 207 167 0 0 chr11 39068630 39068672 -111714881 + (TG)n Simple_repeat Simple_repeat 2 43 0 326 233 27 0 chr11 39069797 39069870 -111713683 + MER81 DNA DNA 40 114 0 338 292 62 7 chr11 39069878 39070022 -111713531 - MIR SINE MIR -20 242 91 342 268 65 0 chr11 39070022 39070145 -111713408 + L1ME4a LINE L1 5990 6120 -1 1150 93 32 14 chr11 39070965 39071181 -111712372 + L1PBa LINE L1 1888 2107 -4756 345 248 97 9 chr11 39071193 39071306 -111712247 - MIR SINE MIR -67 141 19 252 59 0 0 chr11 39071906 39071940 -111711613 + (GA)n Simple_repeat Simple_repeat 1 34 0 716 284 59 9 chr11 39071994 39072216 -111711337 - MIR SINE MIR -23 239 7 2367 45 3 0 chr11 39073270 39073559 -111709994 - L1PA3 LINE L1 -3 6152 5863 272 410 0 0 chr11 39074044 39074144 -111709409 - L2 LINE L2 -489 2825 2726 436 273 18 0 chr11 39075679 39075789 -111707764 + MER81 DNA DNA 3 114 0 414 39 0 0 chr11 39075811 39075863 -111707690 + (TG)n Simple_repeat Simple_repeat 1 52 0 23 0 0 0 chr11 39075949 39075972 -111707581 + AT_rich Low_complexity Low_complexity 1 23 0 392 141 30 10 chr11 39076548 39076647 -111706906 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 683 335 115 24 chr11 39076712 39077085 -111706468 + L2 LINE L2 124 530 -2784 247 303 30 24 chr11 39078640 39078805 -111704748 + HAL1b LINE L1 120 285 -1063 683 233 22 61 chr11 39079088 39079316 -111704237 + MER20 DNA MER1_type 1 219 0 536 282 35 20 chr11 39079326 39079528 -111704025 + MLT1J LTR MaLR 165 369 -142 1640 221 69 118 chr11 39079592 39080084 -111703469 - L2 LINE L2 -507 2807 2288 296 185 154 0 chr11 39080084 39080149 -111703404 + MER116 DNA Mariner 5 79 -1 1640 221 69 118 chr11 39080149 39080272 -111703281 - L2 LINE L2 -1026 2288 2161 2513 117 94 3 chr11 39080478 39080681 -111702872 + MSTA LTR MaLR 1 184 -244 225 0 0 0 chr11 39080681 39080706 -111702847 + (TC)n Simple_repeat Simple_repeat 1 25 0 2513 117 94 3 chr11 39080706 39080894 -111702659 + MSTA LTR MaLR 184 428 0 1606 194 49 12 chr11 39080894 39081217 -111702336 + MER1B DNA MER1_type 1 337 0 371 271 68 53 chr11 39081299 39081506 -111702047 - L1ME3A LINE L1 -17 6153 5944 963 259 88 24 chr11 39081517 39082787 -111700766 - L1ME3A LINE L1 -405 5761 4384 234 214 36 0 chr11 39082889 39082945 -111700608 + GA-rich Low_complexity Low_complexity 2 59 0 499 348 73 28 chr11 39083691 39083891 -111699662 + MLT1K LTR MaLR 16 206 -382 1898 189 15 53 chr11 39083891 39084303 -111699250 - MSTD LTR MaLR 0 396 1 499 348 73 28 chr11 39084303 39084527 -111699026 + MLT1K LTR MaLR 206 459 -129 259 307 59 20 chr11 39084972 39085073 -111698480 + MIR SINE MIR 42 146 -62 296 200 0 14 chr11 39085845 39085915 -111697638 + MLT1L LTR MaLR 544 612 -3 2244 88 3 0 chr11 39086145 39086429 -111697124 + AluSq SINE Alu 1 285 -28 189 0 0 0 chr11 39086429 39086450 -111697103 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 720 93 27 67 chr11 39086526 39086676 -111696877 - MER53 DNA DNA -2 187 44 1845 106 0 0 chr11 39086844 39087081 -111696472 + AluSg/x SINE Alu 68 304 -8 2495 126 3 3 chr11 39087810 39088174 -111695379 - THE1B LTR MaLR 0 364 1 1825 153 121 16 chr11 39088463 39088842 -111694711 - MSTA LTR MaLR -2 426 8 225 0 0 0 chr11 39088844 39088869 -111694684 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 297 0 0 0 chr11 39088868 39088901 -111694652 + (TG)n Simple_repeat Simple_repeat 2 34 0 182 286 24 0 chr11 39089963 39090005 -111693548 + L2 LINE L2 2653 2695 -619 314 322 147 76 chr11 39090245 39090599 -111692954 + L2 LINE L2 2804 3182 -90 207 114 0 0 chr11 39090656 39090691 -111692862 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 182 359 11 22 chr11 39091353 39091445 -111692108 + MIR3 SINE MIR 105 195 -13 309 280 10 40 chr11 39091556 39091656 -111691897 + L2 LINE L2 3216 3312 -1 * 503 317 33 45 chr11 39091647 39091890 -111691663 - MIR SINE MIR -3 259 20 254 96 19 19 chr11 39092557 39092609 -111690944 + Charlie5 DNA MER1_type 2545 2596 -16 1094 156 235 21 chr11 39092609 39092847 -111690706 + AluSg1 SINE Alu 6 294 -15 430 263 57 29 chr11 39093169 39093344 -111690209 - MER117 DNA MER1_type -1 196 17 185 169 17 0 chr11 39093573 39093632 -111689921 + (TA)n Simple_repeat Simple_repeat 1 60 0 575 180 0 0 chr11 39093968 39094057 -111689496 - AluJ/FLAM SINE Alu -223 89 1 526 261 83 47 chr11 39095399 39095652 -111687901 - MIR SINE MIR 0 262 1 279 276 90 90 chr11 39095933 39096078 -111687475 - MIR SINE MIR -71 191 47 277 170 82 143 chr11 39099430 39099577 -111683976 - MLT1H LTR MaLR -2 547 410 343 213 38 0 chr11 39099669 39099749 -111683804 - MLT1H LTR MaLR -321 228 146 279 382 0 9 chr11 39099975 39100085 -111683468 + MER5A DNA MER1_type 73 181 -8 1827 171 10 7 chr11 39101531 39101829 -111681724 + AluJo SINE Alu 1 299 -13 234 309 85 43 chr11 39103794 39103888 -111679665 - MER91C DNA MER1_type -3 137 40 407 221 25 6 chr11 39104243 39104401 -111679152 + CT-rich Low_complexity Low_complexity 4 164 0 319 213 37 22 chr11 39104420 39104556 -111678997 + CT-rich Low_complexity Low_complexity 4 141 0 628 314 81 28 chr11 39104559 39104764 -111678789 - L2 LINE L2 -1 3312 3086 554 224 71 24 chr11 39104764 39104934 -111678619 - MER5B DNA MER1_type 0 178 1 628 314 81 28 chr11 39104934 39105011 -111678542 - L2 LINE L2 -227 3086 3015 667 248 6 6 chr11 39105069 39105226 -111678327 + MER63A DNA MER1_type 53 209 -1 189 225 0 0 chr11 39105231 39105271 -111678282 - L2 LINE L2 -345 2969 2930 2395 215 36 55 chr11 39106346 39106969 -111676584 - MLT1E2 LTR MaLR 0 626 1 2147 95 0 7 chr11 39107240 39107545 -111676008 - AluSq SINE Alu 0 303 1 455 272 52 0 chr11 39107571 39107707 -111675846 + L2 LINE L2 3156 3298 -15 276 286 20 61 chr11 39107706 39107804 -111675749 - L2 LINE L2 -9 3263 3170 * 1866 186 75 8 chr11 39107860 39108259 -111675294 + MSTA LTR MaLR 1 426 -2 1475 156 21 55 chr11 39108471 39108797 -111674756 + MER58B DNA MER1_type 27 341 0 22 0 0 0 chr11 39109670 39109692 -111673861 + AT_rich Low_complexity Low_complexity 1 22 0 367 288 8 34 chr11 39110827 39110945 -111672608 - MIR3 SINE MIR -12 196 82 784 294 22 0 chr11 39111016 39111244 -111672309 + MIR SINE MIR 11 243 -19 222 173 19 19 chr11 39111251 39111303 -111672250 + (CTA)n Simple_repeat Simple_repeat 1 52 0 342 322 44 0 chr11 39111918 39112101 -111671452 + L1ME3 LINE L1 5691 5881 -281 216 0 0 0 chr11 39113405 39113429 -111670124 + (TA)n Simple_repeat Simple_repeat 2 25 0 190 204 37 37 chr11 39113956 39114010 -111669543 - MIR SINE MIR -66 196 143 23 0 0 0 chr11 39114199 39114222 -111669331 + AT_rich Low_complexity Low_complexity 1 23 0 485 135 42 0 chr11 39114223 39114319 -111669234 - L1MA9 LINE L1 0 6312 6213 358 285 128 34 chr11 39114778 39114957 -111668596 + MIR SINE MIR 67 262 0 205 380 13 13 chr11 39114955 39115034 -111668519 + L2 LINE L2 3190 3268 -4 * 404 303 9 0 chr11 39116965 39117074 -111666479 + MIR3 SINE MIR 97 206 -2 385 393 31 47 chr11 39117428 39117543 -111666010 + L2 LINE L2 2880 2995 -277 180 0 0 0 chr11 39117543 39117563 -111665990 + (TA)n Simple_repeat Simple_repeat 2 21 0 288 53 0 0 chr11 39117563 39117601 -111665952 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 2343 86 0 0 chr11 39117601 39117891 -111665662 - AluY SINE Alu -21 290 1 385 393 31 47 chr11 39117891 39118094 -111665459 + L2 LINE L2 2992 3195 -77 225 250 40 26 chr11 39118198 39118274 -111665279 - MIR3 SINE MIR -43 165 89 308 202 107 12 chr11 39118957 39119041 -111664512 + MER94 DNA DNA 13 104 -30 526 227 0 21 chr11 39119153 39119294 -111664259 - MLT1E3 LTR MaLR -421 203 66 393 270 8 8 chr11 39119190 39119316 -111664237 - MLT2C1 LTR ERVL -250 147 22 * 1491 216 110 35 chr11 39119365 39119827 -111663726 - MLT1D LTR MaLR -8 497 1 315 280 54 11 chr11 39119841 39119934 -111663619 - L2 LINE L2 -19 3253 3157 985 226 6 0 chr11 39120121 39120302 -111663251 - MER5A DNA MER1_type -7 182 1 582 304 177 0 chr11 39120361 39120621 -111662932 + L2 LINE L2 3008 3313 0 188 135 21 219 chr11 39121450 39121546 -111662007 + L3b LINE CR1 1274 1350 -233 491 286 0 0 chr11 39121563 39121675 -111661878 - MER81 DNA DNA -2 112 1 207 339 31 0 chr11 39121685 39121750 -111661803 + L3 LINE CR1 1414 1480 -97 255 31 0 0 chr11 39122086 39122118 -111661435 + (TG)n Simple_repeat Simple_repeat 1 32 0 324 102 0 0 chr11 39122118 39122167 -111661386 + (GA)n Simple_repeat Simple_repeat 2 50 0 290 267 64 47 chr11 39122585 39122757 -111660796 + MLT1J LTR MaLR 7 181 -330 270 233 150 45 chr11 39122854 39122987 -111660566 + MLT1L LTR MaLR 465 611 -4 324 0 0 0 chr11 39123157 39123193 -111660360 + (TG)n Simple_repeat Simple_repeat 2 37 0 483 238 7 41 chr11 39124346 39124493 -111659060 + MER3 DNA MER1_type 68 209 0 30 0 0 0 chr11 39124648 39124678 -111658875 + AT_rich Low_complexity Low_complexity 1 30 0 383 320 59 23 chr11 39124772 39124788 -111658765 + MIR SINE MIR 19 33 -229 2733 59 50 0 chr11 39124788 39125146 -111658407 + L1PA7 LINE L1 5773 6148 -6 383 320 59 23 chr11 39125146 39125348 -111658205 + MIR SINE MIR 33 245 -17 210 174 0 0 chr11 39125353 39125399 -111658154 + (TG)n Simple_repeat Simple_repeat 1 46 0 193 398 108 25 chr11 39125740 39126054 -111657499 + L2 LINE L2 2814 3153 -119 502 224 7 41 chr11 39126298 39126445 -111657108 + MER3 DNA MER1_type 68 209 0 237 224 35 0 chr11 39128930 39128988 -111654565 + MIR SINE MIR 132 191 -71 521 97 39 0 chr11 39130879 39130982 -111652571 + (TCTA)n Simple_repeat Simple_repeat 2 108 0 183 394 0 0 chr11 39131514 39131585 -111651968 - L2 LINE L2 0 3272 3202 262 314 51 5 chr11 39131721 39131880 -111651673 + MIR SINE MIR 18 251 -11 243 228 128 100 chr11 39132971 39133151 -111650402 - MLT1J1 LTR MaLR -25 421 237 803 195 47 18 chr11 39133285 39133454 -111650099 - MLT1J1 LTR MaLR -270 176 3 192 40 0 0 chr11 39133720 39133745 -111649808 + (CA)n Simple_repeat Simple_repeat 1 25 0 336 327 45 36 chr11 39184370 39184593 -111598960 + MIR SINE MIR 24 248 -14 1657 144 107 4 chr11 39184873 39185136 -111598417 - AluSx SINE Alu -22 290 1 322 399 31 0 chr11 39185151 39185314 -111598239 - MIR SINE MIR -75 187 20 2156 110 0 4 chr11 39186317 39186640 -111596913 + AluSc SINE Alu 1 322 0 319 262 136 0 chr11 39186668 39186771 -111596782 + L2 LINE L2 3197 3313 0 220 321 211 0 chr11 39186820 39186929 -111596624 + MIR SINE MIR 20 151 -111 242 241 0 0 chr11 39186990 39187044 -111596509 + (TA)n Simple_repeat Simple_repeat 2 55 0 649 281 5 14 chr11 39188806 39189073 -111594480 - L1M1 LINE L1 -4572 2993 2829 276 155 70 0 chr11 39189069 39189140 -111594413 + L1MA8 LINE L1 6216 6291 0 * 412 271 0 30 chr11 39189194 39189360 -111594193 - L1MDa LINE L1 -4715 1825 1665 5721 180 39 0 chr11 39189487 39190466 -111593087 - L1PA7 LINE L1 -2 6152 5163 11446 130 9 16 chr11 39190468 39192319 -111591234 + Tigger1 DNA MER2_type 522 2360 -58 336 64 0 0 chr11 39192346 39192393 -111591160 + (TG)n Simple_repeat Simple_repeat 1 47 0 428 35 17 0 chr11 39192777 39192835 -111590718 + (CA)n Simple_repeat Simple_repeat 2 60 0 195 273 55 0 chr11 39193035 39193090 -111590463 - L2 LINE L2 -47 3225 3168 327 121 0 0 chr11 39193465 39193523 -111590030 + (TG)n Simple_repeat Simple_repeat 1 58 0 247 321 78 47 chr11 39194270 39194463 -111589090 + MIR SINE MIR 20 218 -44 23 33 0 0 chr11 39195034 39195064 -111588489 + AT_rich Low_complexity Low_complexity 1 30 0 791 301 46 0 chr11 39195514 39195796 -111587757 + L1ME3A LINE L1 5455 5749 -421 780 254 13 49 chr11 39195801 39196025 -111587528 + L1ME3A LINE L1 5941 6156 -14 391 278 148 18 chr11 39196019 39196242 -111587311 + HAL1 LINE L1 1549 1800 -707 * 21 0 0 0 chr11 39196497 39196518 -111587035 + AT_rich Low_complexity Low_complexity 1 21 0 380 269 46 81 chr11 39196819 39197102 -111586451 + HAL1 LINE L1 2228 2500 -7 1800 220 40 42 chr11 39197188 39197665 -111585888 - MLT1D LTR MaLR -7 498 23 2565 54 0 13 chr11 39198410 39198724 -111584829 + AluY SINE Alu 1 310 -1 274 270 99 9 chr11 39199567 39199678 -111583875 + MIR SINE MIR 75 195 -67 639 209 92 10 chr11 39201648 39201844 -111581709 - MER69 DNA AcHobo -8 2518 2307 1373 227 10 52 chr11 39201858 39202242 -111581311 + MLT1A2 LTR MaLR 1 368 -6 1894 214 177 15 chr11 39202448 39203040 -111580513 - MER69 DNA AcHobo -1754 772 85 773 227 67 4 chr11 39203040 39203309 -111580244 - L1M4 LINE L1 -3539 2607 2322 182 349 12 0 chr11 39203706 39203789 -111579764 + L2 LINE L2 2419 2502 -812 35 0 0 0 chr11 39204207 39204242 -111579311 + AT_rich Low_complexity Low_complexity 1 35 0 312 304 18 18 chr11 39204646 39204758 -111578795 - MIR3 SINE MIR -7 201 90 1754 223 39 25 chr11 39204838 39205358 -111578195 + L1MB7 LINE L1 4577 5103 -1043 1800 135 57 30 chr11 39205485 39205819 -111577734 - MER61A LTR ERV1 0 343 1 6983 97 12 8 chr11 39205819 39207192 -111576361 - MER61A-int LTR ERV1 0 5217 3796 760 183 19 29 chr11 39207192 39207425 -111576128 + L1MB7 LINE L1 5202 5432 -742 1772 225 65 11 chr11 39207427 39207952 -111575601 + L1MB7 LINE L1 5617 6169 -15 216 0 0 0 chr11 39207956 39207980 -111575573 + (TA)n Simple_repeat Simple_repeat 1 24 0 236 363 24 40 chr11 39207986 39208110 -111575443 - MIR SINE MIR -93 169 48 322 308 45 26 chr11 39208928 39209084 -111574469 + MIR SINE MIR 103 261 -1 750 189 54 38 chr11 39209116 39209301 -111574252 - MER3 DNA MER1_type 0 209 22 2601 107 6 3 chr11 39211488 39211851 -111571702 + THE1B LTR MaLR 1 364 0 232 289 54 7 chr11 39211985 39212108 -111571445 + (TATG)n Simple_repeat Simple_repeat 4 137 -22 204 40 0 0 chr11 39212108 39212133 -111571420 + (CA)n Simple_repeat Simple_repeat 1 25 0 232 289 54 7 chr11 39212133 39212158 -111571395 + (TATG)n Simple_repeat Simple_repeat 137 159 0 240 141 33 54 chr11 39212174 39212266 -111571287 + (TG)n Simple_repeat Simple_repeat 1 90 0 614 278 165 0 chr11 39212270 39212482 -111571071 + MIR SINE MIR 13 259 -3 208 324 0 0 chr11 39213289 39213357 -111570196 + L2 LINE L2 3159 3226 -87 223 226 0 19 chr11 39213967 39214020 -111569533 + L2 LINE L2 3262 3313 0 595 300 21 33 chr11 39214471 39214711 -111568842 - MIR SINE MIR -25 237 1 270 316 18 35 chr11 39217100 39217214 -111566339 + MIR SINE MIR 11 122 -140 1024 149 59 5 chr11 39217423 39217645 -111565908 - L1MA7 LINE L1 -7 6284 6051 575 190 0 156 chr11 39217645 39217882 -111565671 + L1MA7 LINE L1 5874 6073 -218 839 181 1 30 chr11 39217908 39218113 -111565440 - MLT1B LTR MaLR -6 384 173 1978 159 26 6 chr11 39218148 39218493 -111565060 - MLT1A1 LTR MaLR -13 352 1 394 319 48 34 chr11 39218943 39219150 -111564403 + MIR SINE MIR 47 256 -6 1032 239 22 70 chr11 39219306 39219661 -111563892 - MER46C DNA MER2_type 0 338 1 22 0 0 0 chr11 39219754 39219776 -111563777 + AT_rich Low_complexity Low_complexity 1 22 0 427 283 99 36 chr11 39220830 39221053 -111562500 - MER102a DNA MER1_type -13 317 81 304 122 82 0 chr11 39221055 39221104 -111562449 - MIR SINE MIR -87 175 123 281 301 0 38 chr11 39221160 39221293 -111562260 + MLT1H LTR MaLR 80 207 -342 232 344 41 33 chr11 39221488 39221610 -111561943 - MIR SINE MIR -121 141 19 1680 217 32 51 chr11 39222009 39222483 -111561070 - MLT1C LTR MaLR -2 465 1 2375 56 7 3 chr11 39223411 39223713 -111559840 - AluY SINE Alu -8 303 1 2372 66 23 3 chr11 39224098 39224403 -111559150 - AluY SINE Alu 0 311 1 374 257 55 0 chr11 39224618 39224727 -111558826 + MIR SINE MIR 34 148 -114 1058 222 50 60 chr11 39224728 39225165 -111558388 - MER69 DNA AcHobo -4 2522 2090 549 249 44 4 chr11 39225316 39225511 -111558042 - MLT1B LTR MaLR -11 373 165 329 161 0 0 chr11 39225515 39225571 -111557982 - MLT1B LTR MaLR -318 56 1 780 289 132 25 chr11 39226782 39227432 -111556121 - L2 LINE L2 0 3313 2592 879 323 104 34 chr11 39227621 39228521 -111555032 - L2 LINE L2 -2264 1050 88 408 281 54 18 chr11 39228700 39228867 -111554686 - MIR SINE MIR -76 186 14 364 306 186 0 chr11 39228932 39229056 -111554497 + L2 LINE L2 3121 3267 -5 229 197 0 49 chr11 39229078 39229139 -111554414 + T-rich Low_complexity Low_complexity 5 62 0 435 38 0 0 chr11 39229588 39229641 -111553912 + (TG)n Simple_repeat Simple_repeat 1 53 0 207 0 0 0 chr11 39229640 39229663 -111553890 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 384 22 0 0 chr11 39230294 39230339 -111553214 + (TG)n Simple_repeat Simple_repeat 2 46 0 341 342 20 35 chr11 39230457 39230659 -111552894 - MIR SINE MIR -42 220 22 2234 103 0 3 chr11 39231396 39231697 -111551856 + AluSx SINE Alu 2 301 -11 180 111 0 0 chr11 39232133 39232160 -111551393 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 279 278 113 40 chr11 39232161 39232312 -111551241 - MIR SINE MIR -16 246 85 2401 91 45 6 chr11 39232312 39232665 -111550888 - THE1C LTR MaLR 0 375 9 372 259 70 21 chr11 39235086 39235229 -111548324 - MLT1J LTR MaLR -257 254 105 391 373 81 18 chr11 39236138 39236560 -111546993 - L2 LINE L2 -213 3059 2608 841 252 67 17 chr11 39237729 39237967 -111545586 + MIR SINE MIR 12 261 -1 299 240 40 0 chr11 39238824 39238899 -111544654 - ORSL DNA AcHobo -1 274 197 25 31 0 0 chr11 39239274 39239306 -111544247 + AT_rich Low_complexity Low_complexity 1 32 0 528 266 181 5 chr11 39239306 39239494 -111544059 - MIR SINE MIR -14 248 28 357 314 39 0 chr11 39240465 39240669 -111542884 + L1ME LINE L1 5597 5808 -313 1257 167 104 5 chr11 39240704 39240925 -111542628 + AluJb SINE Alu 1 243 -69 2151 114 9 0 chr11 39241781 39242131 -111541422 + L1MA3 LINE L1 5843 6195 -110 2452 214 82 112 chr11 39242218 39243313 -111540240 + L1M2 LINE L1 466 1527 -5962 1900 270 25 3 chr11 39243323 39243971 -111539582 + L1M2 LINE L1 2289 2950 -4546 6268 213 47 16 chr11 39243984 39245937 -111537616 + L1M2 LINE L1 3294 5309 -2256 4479 153 29 56 chr11 39245930 39247335 -111536218 + L1M2 LINE L1 5736 7096 -614 * 192 77 0 0 chr11 39247627 39247653 -111535900 + (TC)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr11 39248109 39248132 -111535421 + AT_rich Low_complexity Low_complexity 1 23 0 1318 177 71 41 chr11 39248557 39248851 -111534702 + AluJo SINE Alu 1 303 -9 497 348 31 13 chr11 39250966 39251193 -111532360 - MIR SINE MIR -24 238 8 239 318 47 0 chr11 39251312 39251397 -111532156 + MIR SINE MIR 53 141 -121 413 276 58 45 chr11 39251781 39251937 -111531616 - MIR SINE MIR 0 262 105 1459 12 0 0 chr11 39252519 39252685 -111530868 + L1PA2 LINE L1 5986 6151 -4 486 294 24 8 chr11 39253746 39253872 -111529681 + LTR16C LTR ERVL 152 279 -212 290 246 0 0 chr11 39254058 39254115 -111529438 + LTR16C LTR ERVL 286 342 -149 1612 147 163 10 chr11 39255656 39255963 -111527590 - MER47A DNA MER2_type 0 366 13 650 243 200 50 chr11 39255978 39256443 -111527110 - MLT1F1 LTR MaLR -8 559 25 486 218 61 14 chr11 39256954 39257101 -111526452 - MIR SINE MIR -6 256 103 591 261 37 41 chr11 39257131 39257524 -111526029 - L1ME LINE L1 -616 5554 5165 1160 265 61 28 chr11 39257972 39258649 -111524904 - L1ME LINE L1 -2199 3947 3238 27 29 0 0 chr11 39258673 39258707 -111524846 + AT_rich Low_complexity Low_complexity 1 34 0 228 342 13 13 chr11 39258732 39258890 -111524663 - L1ME LINE L1 -3060 3086 2929 321 300 153 12 chr11 39258975 39259145 -111524408 - L1ME3A LINE L1 -7 6163 5970 327 278 52 52 chr11 39259226 39259399 -111524154 - L1MC5 LINE L1 -453 7508 7336 1888 104 41 0 chr11 39259535 39259804 -111523749 - AluSc SINE Alu -5 304 25 1277 288 123 9 chr11 39261012 39261467 -111522086 + MLT1G1 LTR MaLR 82 588 -7 634 238 19 12 chr11 39261720 39261880 -111521673 + MIR SINE MIR 12 172 -90 2088 153 109 8 chr11 39262239 39262624 -111520929 - MSTA LTR MaLR -2 426 3 6737 183 25 10 chr11 39262626 39263859 -111519694 - MSTA-int LTR MaLR 0 1651 400 1088 83 0 21 chr11 39263862 39264007 -111519546 + AluY SINE Alu 1 142 -169 1441 112 9 13 chr11 39264108 39264332 -111519221 - AluY SINE Alu -88 223 1 2504 151 10 0 chr11 39264332 39264735 -111518818 - MSTA-int LTR MaLR -1244 407 1 1564 153 79 31 chr11 39264735 39265096 -111518457 - MSTA LTR MaLR 0 428 1 1592 130 35 32 chr11 39265285 39265570 -111517983 - THE1C LTR MaLR -89 286 1 10615 109 28 11 chr11 39265570 39267124 -111516429 - THE1C-int LTR MaLR 0 1580 1 2092 144 27 27 chr11 39267124 39267499 -111516054 - THE1C LTR MaLR 0 375 1 2062 134 7 0 chr11 39267570 39267869 -111515684 - AluSq SINE Alu -12 301 1 23 68 0 0 chr11 39267932 39267976 -111515577 + AT_rich Low_complexity Low_complexity 1 44 0 876 288 25 8 chr11 39268312 39268552 -111515001 - MIR SINE MIR -2 260 17 933 223 129 6 chr11 39269194 39269544 -111514009 - Charlie4a DNA MER1_type -89 419 27 488 329 13 0 chr11 39269737 39269889 -111513664 + MIR3 SINE MIR 52 205 -3 2645 190 19 25 chr11 39270535 39271062 -111512491 + L1MCa LINE L1 474 997 -5429 2138 106 11 44 chr11 39271063 39271430 -111512123 + L1MA5 LINE L1 5428 5782 -518 872 204 0 0 chr11 39271430 39271587 -111511966 + FRAM SINE Alu 1 153 -23 2373 133 104 8 chr11 39271588 39272061 -111511492 + L1MA5 LINE L1 5771 6288 -12 2951 148 63 3 chr11 39272070 39272657 -111510896 + L1MCa LINE L1 982 1603 -4823 1404 253 106 25 chr11 39272782 39273266 -111510287 + MLT1H LTR MaLR 1 606 -18 370 298 50 0 chr11 39273297 39273418 -111510135 + MIR SINE MIR 65 191 -71 845 242 32 52 chr11 39273605 39273853 -111509700 + MIR SINE MIR 10 252 -10 191 35 0 35 chr11 39273857 39273886 -111509667 + (TTA)n Simple_repeat Simple_repeat 1 28 0 213 136 0 23 chr11 39274201 39274245 -111509308 + (CAAAAA)n Simple_repeat Simple_repeat 5 47 0 512 293 69 5 chr11 39274453 39274641 -111508912 + MIR SINE MIR 51 250 -12 351 309 68 21 chr11 39276111 39276302 -111507251 + MIR SINE MIR 63 262 0 2151 98 44 0 chr11 39277085 39277380 -111506173 + AluSc SINE Alu 1 308 -1 351 282 0 12 chr11 39277881 39277966 -111505587 - MIR SINE MIR -149 113 30 344 293 210 6 chr11 39278949 39279106 -111504447 + MIR SINE MIR 1 189 -73 258 286 0 32 chr11 39280169 39280232 -111503321 + L2 LINE L2 3197 3257 -15 271 248 50 40 chr11 39280395 39280496 -111503057 + MIR SINE MIR 161 262 0 707 299 66 69 chr11 39282339 39282405 -111501148 - MER115 DNA AcHobo 0 693 628 1955 129 14 0 chr11 39282405 39282708 -111500845 - AluSx SINE Alu 0 307 1 707 299 66 69 chr11 39282708 39283187 -111500366 - MER115 DNA AcHobo -65 628 120 534 304 84 30 chr11 39283655 39283892 -111499661 + MIR SINE MIR 12 261 -1 1812 184 3 0 chr11 39284052 39284357 -111499196 + AluSx SINE Alu 1 306 -6 279 54 0 0 chr11 39284610 39284647 -111498906 + (TG)n Simple_repeat Simple_repeat 1 37 0 2318 100 0 3 chr11 39285658 39285969 -111497584 - AluSp SINE Alu -3 310 1 21 0 0 0 chr11 39286064 39286085 -111497468 + AT_rich Low_complexity Low_complexity 1 21 0 894 184 60 55 chr11 39287137 39287355 -111496198 + MER20 DNA MER1_type 1 219 0 337 272 76 0 chr11 39287360 39287452 -111496101 - L3 LINE CR1 -270 1307 1209 28 48 0 0 chr11 39287455 39287497 -111496056 + AT_rich Low_complexity Low_complexity 1 42 0 2526 0 0 0 chr11 39287945 39288215 -111495338 + AluYa5 SINE Alu 39 308 -3 222 288 15 15 chr11 39289261 39289327 -111494226 + MIR3 SINE MIR 10 75 -133 320 286 116 27 chr11 39289959 39290071 -111493482 + MIR3 SINE MIR 48 169 -39 3597 159 31 3 chr11 39290636 39291254 -111492299 + MER41B LTR ERV1 1 635 0 647 203 8 0 chr11 39291879 39292012 -111491541 - L1MA9 LINE L1 -40 6272 6139 962 174 71 75 chr11 39292016 39292269 -111491284 - LTR8A LTR ERV1 0 727 476 2533 137 19 36 chr11 39292431 39292897 -111490656 - LTR8A LTR ERV1 -269 458 1 516 273 50 27 chr11 39292897 39293117 -111490436 - L1MA9 LINE L1 -174 6138 5914 2631 170 37 9 chr11 39293163 39293714 -111489839 - L1MA9 LINE L1 -523 5789 5224 684 217 0 0 chr11 39293739 39293859 -111489694 - FLAM_A SINE Alu -11 122 3 218 250 14 14 chr11 39294233 39294305 -111489248 + (TA)n Simple_repeat Simple_repeat 2 73 0 188 194 0 0 chr11 39294911 39294947 -111488606 - L2 LINE L2 -49 3223 3188 269 196 0 0 chr11 39295504 39295555 -111487998 - L1ME3A LINE L1 -9 6161 6111 1658 271 64 35 chr11 39295604 39296654 -111486899 - L1MEc LINE L1 -2827 3388 2309 370 321 72 17 chr11 39296695 39296932 -111486621 - L1MEc LINE L1 -4122 2274 2025 316 281 44 44 chr11 39297034 39297148 -111486405 - L3 LINE CR1 -674 903 790 2595 128 0 3 chr11 39297206 39297582 -111485971 + THE1C LTR MaLR 1 375 0 24 67 0 0 chr11 39297898 39297943 -111485610 + AT_rich Low_complexity Low_complexity 1 45 0 386 317 55 31 chr11 39298054 39298347 -111485206 - MLT1H LTR MaLR -16 533 196 261 296 49 12 chr11 39299207 39299369 -111484184 + L1ME4a LINE L1 5940 6107 -14 314 349 58 81 chr11 39299634 39299929 -111483624 + L2 LINE L2 2967 3254 -18 592 309 48 0 chr11 39300087 39300275 -111483278 - L2 LINE L2 0 3313 3117 882 155 0 0 chr11 39300281 39300423 -111483130 - L1MB1 LINE L1 -467 5701 5560 * 2234 167 29 37 chr11 39300421 39300876 -111482677 + L1MB1 LINE L1 5696 6146 -22 235 313 76 15 chr11 39300896 39301027 -111482526 - L2 LINE L2 -195 3118 2980 875 211 118 7 chr11 39301045 39301343 -111482210 - MER33 DNA MER1_type 0 324 1 2446 55 10 3 chr11 39301644 39301953 -111481600 - AluY SINE Alu 0 311 1 21 82 0 0 chr11 39301988 39302037 -111481516 + AT_rich Low_complexity Low_complexity 1 49 0 24236 29 3 1 chr11 39302037 39305767 -111477786 - L1PA3 LINE L1 -3 6152 2423 970 291 132 12 chr11 39306371 39306773 -111476780 - LTR16A LTR ERVL 0 450 1 21 71 0 0 chr11 39306806 39306848 -111476705 + AT_rich Low_complexity Low_complexity 1 42 0 379 321 62 0 chr11 39307337 39307530 -111476023 - L1ME LINE L1 -369 5752 5548 265 241 0 74 chr11 39307851 39307959 -111475594 - LTR67 LTR ERVL 0 557 458 1969 214 37 18 chr11 39307997 39308455 -111475098 + MLT1C LTR MaLR 1 467 0 371 217 9 0 chr11 39308939 39309045 -111474508 + GA-rich Low_complexity Low_complexity 3 109 0 750 281 50 23 chr11 39309079 39309300 -111474253 - MIR SINE MIR -15 247 21 191 235 20 20 chr11 39309717 39309768 -111473785 + MIR SINE MIR 96 146 -62 1078 176 19 23 chr11 39310108 39310324 -111473229 - MER20 DNA MER1_type -4 215 1 3281 131 4 57 chr11 39310547 39311191 -111472362 + MER4B LTR ERV1 1 779 0 217 336 277 0 chr11 39311559 39311696 -111471857 - MIR3 SINE MIR -6 202 28 1663 162 10 40 chr11 39311863 39312166 -111471387 - AluJo SINE Alu -10 302 9 230 311 22 22 chr11 39312629 39312719 -111470834 - L3 LINE CR1 -217 1360 1271 343 344 22 22 chr11 39312882 39313109 -111470444 + HERV16 LTR ERVL 4667 4893 -103 445 277 166 20 chr11 39313666 39313919 -111469634 + L2 LINE L2 3011 3300 -13 513 248 115 25 chr11 39313964 39314121 -111469432 - MLT1G1 LTR MaLR -8 582 412 12180 94 36 1 chr11 39314151 39316709 -111466844 - L1PA7 LINE L1 0 6154 3531 4506 103 4 0 chr11 39316709 39317387 -111466166 + L1PA7 LINE L1 2837 3517 -2629 1054 277 28 56 chr11 39317392 39317782 -111465771 - MLT1G1 LTR MaLR -207 388 10 1721 164 18 24 chr11 39317785 39318120 -111465433 + THE1C LTR MaLR 28 360 -15 1974 120 0 0 chr11 39318502 39318769 -111464784 - AluSc SINE Alu -4 305 39 21 0 0 0 chr11 39321862 39321883 -111461670 + AT_rich Low_complexity Low_complexity 1 21 0 1013 278 68 20 chr11 39321974 39322327 -111461226 + MLT1H LTR MaLR 7 376 -173 189 0 0 0 chr11 39322366 39322387 -111461166 + (CAGC)n Simple_repeat Simple_repeat 2 22 0 331 255 31 20 chr11 39322931 39323029 -111460524 + MIR SINE MIR 104 202 -60 1434 144 33 6 chr11 39323533 39323963 -111459590 - LTR54 LTR ERV1 0 510 6 270 329 189 21 chr11 39324090 39324233 -111459320 - L3 LINE CR1 -99 1478 1312 552 204 7 49 chr11 39324499 39324641 -111458912 + Charlie8 DNA MER1_type 87 222 -2195 259 323 31 10 chr11 39324779 39324875 -111458678 + MER5B DNA MER1_type 4 101 -77 357 213 299 24 chr11 39325826 39325953 -111457600 - MIR SINE MIR -1 261 100 201 362 92 31 chr11 39326261 39326424 -111457129 + MER5A DNA MER1_type 14 186 -3 381 292 0 18 chr11 39326514 39326627 -111456926 + L2 LINE L2 3169 3279 -34 296 271 76 59 chr11 39326908 39327026 -111456527 - L2 LINE L2 -215 3057 2938 258 239 33 65 chr11 39327252 39327344 -111456209 + MIR SINE MIR 118 206 -56 364 385 50 5 chr11 39328255 39328476 -111455077 + MIR SINE MIR 32 262 0 183 162 0 0 chr11 39328480 39328517 -111455036 + (TTA)n Simple_repeat Simple_repeat 3 39 0 420 291 17 0 chr11 39328695 39328812 -111454741 - MIR3 SINE MIR -36 172 54 776 297 80 45 chr11 39328824 39329225 -111454328 + LTR16A LTR ERVL 14 428 -22 447 202 64 0 chr11 39329228 39329322 -111454231 - FRAM SINE Alu -76 100 1 281 294 62 31 chr11 39330269 39330429 -111453124 - MLT1J LTR MaLR -344 167 3 25 0 0 0 chr11 39330431 39330456 -111453097 + AT_rich Low_complexity Low_complexity 1 25 0 310 322 49 0 chr11 39330456 39330599 -111452954 - L1ME3A LINE L1 -224 5946 5797 395 286 143 39 chr11 39330702 39330961 -111452592 - L1ME3A LINE L1 -2144 5664 5379 26 82 0 0 chr11 39331001 39331062 -111452491 + AT_rich Low_complexity Low_complexity 1 61 0 511 273 172 55 chr11 39331072 39332173 -111451380 - L1ME3A LINE L1 -846 5300 4071 4016 145 25 27 chr11 39333433 39334143 -111449410 + MER50 LTR ERV1 2 710 -24 333 308 60 0 chr11 39335716 39335849 -111447704 - MIR SINE MIR -56 206 66 2045 146 57 40 chr11 39336112 39336536 -111447017 + MSTB1 LTR MaLR 2 432 0 204 97 0 0 chr11 39337454 39337485 -111446068 + (TA)n Simple_repeat Simple_repeat 1 31 0 618 328 45 4 chr11 39338069 39338316 -111445237 + MIR SINE MIR 6 262 0 240 208 83 28 chr11 39338723 39338795 -111444758 - L2 LINE L2 -9 3304 3229 437 308 132 60 chr11 39338867 39339231 -111444322 - L3 LINE CR1 -94 1483 1094 24 100 0 0 chr11 39339890 39339970 -111443583 + AT_rich Low_complexity Low_complexity 1 80 0 1897 263 94 21 chr11 39339971 39340330 -111443223 + L1MCc LINE L1 1 333 -6089 2134 138 30 25 chr11 39340330 39340692 -111442861 + THE1B LTR MaLR 1 364 0 1897 263 94 21 chr11 39340692 39341048 -111442505 + L1MCc LINE L1 333 1116 -5306 4184 181 27 17 chr11 39341152 39342048 -111441505 - L1PA15 LINE L1 -1072 5074 4170 5532 132 15 38 chr11 39342050 39343181 -111440372 + L1PA15 LINE L1 5070 6164 -1 222 264 56 0 chr11 39343585 39343657 -111439896 + (CATATA)n Simple_repeat Simple_repeat 1 76 0 239 226 0 21 chr11 39343668 39343761 -111439792 + (CATA)n Simple_repeat Simple_repeat 2 92 0 1170 225 98 21 chr11 39343933 39344705 -111438848 + L1MCc LINE L1 2081 3009 -3932 512 310 60 0 chr11 39345016 39345200 -111438353 + MIR SINE MIR 66 260 -2 422 341 123 3 chr11 39346270 39346604 -111436949 + L1ME4a LINE L1 5724 6097 -24 252 309 118 26 chr11 39346639 39346791 -111436762 - L2 LINE L2 -1 3271 3106 1895 275 240 40 chr11 39346916 39348531 -111435022 - L2 LINE L2 -25 3288 1330 2065 210 29 12 chr11 39348531 39348945 -111434608 + MSTB LTR MaLR 1 421 -5 822 264 161 11 chr11 39348970 39349231 -111434322 - L2 LINE L2 -2008 1306 1007 21 57 0 0 chr11 39349673 39349708 -111433845 + AT_rich Low_complexity Low_complexity 1 35 0 1648 271 27 16 chr11 39350259 39350701 -111432852 - ERVL LTR ERVL -3887 1877 1431 2122 222 15 29 chr11 39350817 39351562 -111431991 + ERVL LTR ERVL 3392 4183 -1581 314 160 27 67 chr11 39351502 39351577 -111431976 - ERVL LTR ERVL -1581 4183 4112 * 1113 210 65 52 chr11 39351745 39352035 -111431518 + ERVL LTR ERVL 4163 4456 -1308 948 181 122 0 chr11 39352511 39352699 -111430854 + MER2 DNA MER2_type 1 211 -134 32 26 0 0 chr11 39352704 39352743 -111430810 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr11 39352746 39352766 -111430787 + (CATTT)n Simple_repeat Simple_repeat 3 22 0 182 36 0 36 chr11 39352812 39352840 -111430713 + (TATAA)n Simple_repeat Simple_repeat 5 31 0 457 287 24 48 chr11 39353134 39353301 -111430252 - MIR SINE MIR -4 258 96 479 265 29 0 chr11 39353944 39354080 -111429473 + MER103 DNA DNA 8 147 -19 506 310 32 21 chr11 39354591 39354778 -111428775 + MIR3 SINE MIR 19 207 -1 387 206 116 53 chr11 39356595 39356784 -111426769 + L1ME4a LINE L1 5711 5911 -210 448 253 20 53 chr11 39357021 39357171 -111426382 - MER45A DNA AcHobo -19 159 15 212 392 36 10 chr11 39357265 39357459 -111426094 - L3 LINE CR1 -638 939 741 1152 240 0 11 chr11 39357809 39358080 -111425473 - AluJo SINE Alu -17 295 28 189 279 0 0 chr11 39358337 39358380 -111425173 - MIR3 SINE MIR -49 159 117 689 238 36 18 chr11 39358382 39358550 -111425003 - MER58 DNA MER1_type -170 171 1 251 245 123 38 chr11 39358845 39358951 -111424602 - L1ME4a LINE L1 -22 6099 5985 193 179 71 54 chr11 39360512 39360568 -111422985 - L2 LINE L2 -3 3269 3213 1063 205 5 15 chr11 39360719 39360924 -111422629 + MER3 DNA MER1_type 1 203 -6 2877 145 68 10 chr11 39361809 39362306 -111421247 - MER1A DNA MER1_type 0 527 2 381 219 66 101 chr11 39362401 39362629 -111420924 + MER106A DNA MER1_type 10 229 -7 227 344 175 13 chr11 39363698 39363852 -111419701 - MIR SINE MIR -41 221 43 257 232 84 32 chr11 39363938 39364033 -111419520 - MLT1H LTR MaLR -16 533 434 1639 126 88 32 chr11 39364611 39364896 -111418657 - AluSx SINE Alu -11 301 1 234 230 86 30 chr11 39365485 39365640 -111417913 + L1MC/D LINE L1 5707 5877 -244 22 56 0 0 chr11 39365653 39365689 -111417864 + AT_rich Low_complexity Low_complexity 1 36 0 1226 310 72 24 chr11 39365698 39366525 -111417028 - L2 LINE L2 -54 3259 2384 198 282 59 47 chr11 39367186 39367271 -111416282 + MIR SINE MIR 65 150 -58 521 333 39 22 chr11 39368345 39368735 -111414818 + LTR16A LTR ERVL 24 450 0 581 292 46 40 chr11 39368735 39369060 -111414493 + L1ME3A LINE L1 5589 5915 -255 189 291 18 0 chr11 39370074 39370129 -111413424 - L2 LINE L2 0 3313 3258 25 0 0 0 chr11 39370151 39370176 -111413377 + AT_rich Low_complexity Low_complexity 1 25 0 325 333 43 26 chr11 39374273 39374390 -111409163 + L2 LINE L2 3154 3272 0 290 324 137 33 chr11 39374541 39374723 -111408830 + MIR SINE MIR 49 249 -13 2008 151 0 0 chr11 39374724 39375016 -111408537 - AluSx SINE Alu -18 294 3 399 140 19 28 chr11 39375195 39375302 -111408251 + (TA)n Simple_repeat Simple_repeat 1 106 0 21 0 0 0 chr11 39375463 39375484 -111408069 + AT_rich Low_complexity Low_complexity 1 21 0 1004 211 48 0 chr11 39376090 39376299 -111407254 - MER20 DNA MER1_type 0 219 1 496 284 130 6 chr11 39376314 39376483 -111407070 - MIR SINE MIR -2 260 71 1078 222 52 3 chr11 39376805 39377082 -111406471 + L1MD3 LINE L1 6149 6321 -23 201 328 17 42 chr11 39377126 39377245 -111406308 + MIR SINE MIR 32 147 -61 1956 149 42 20 chr11 39378834 39379190 -111404363 + THE1B LTR MaLR 1 364 0 3997 160 42 24 chr11 39379683 39380440 -111403113 + Tigger2 DNA MER2_type 1 771 -1947 1199 117 165 22 chr11 39380467 39380697 -111402856 + Tigger2 DNA MER2_type 2456 2718 0 231 289 92 0 chr11 39381637 39381713 -111401840 - MER63 DNA MER1_type -1 1060 978 42 57 0 0 chr11 39381854 39381924 -111401629 + AT_rich Low_complexity Low_complexity 1 70 0 24 0 0 0 chr11 39382374 39382398 -111401155 + AT_rich Low_complexity Low_complexity 1 24 0 1959 219 43 18 chr11 39382540 39383033 -111400520 - MLT1D LTR MaLR 0 505 1 832 278 95 32 chr11 39383185 39383555 -111399998 + MER110 LTR ERV1 2 394 -97 21 0 0 0 chr11 39383564 39383585 -111399968 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr11 39383887 39383913 -111399640 + AT_rich Low_complexity Low_complexity 1 26 0 660 158 0 38 chr11 39383948 39384131 -111399422 + CT-rich Low_complexity Low_complexity 3 178 0 300 286 122 24 chr11 39385004 39385291 -111398262 - L1ME4a LINE L1 -191 6348 6034 1640 247 30 8 chr11 39385565 39386067 -111397486 - L1ME4a LINE L1 -3362 3202 2690 1445 127 25 4 chr11 39386081 39386317 -111397236 - L1MB5 LINE L1 -1 6173 5933 3349 244 49 23 chr11 39386318 39387969 -111395584 - L1MCb LINE L1 -4863 1182 1 1255 320 40 32 chr11 39388061 39388685 -111394868 + L2 LINE L2 1261 1889 -1425 274 355 19 19 chr11 39389430 39389537 -111394016 + MIR SINE MIR 35 141 -67 413 251 118 37 chr11 39390995 39391182 -111392371 + MIR SINE MIR 61 262 0 204 264 152 32 chr11 39391307 39391414 -111392139 + MIR SINE MIR 35 152 -62 379 247 45 39 chr11 39391471 39391625 -111391928 - MER103 DNA DNA -2 164 10 442 277 15 82 chr11 39392756 39392951 -111390602 + MIR SINE MIR 49 230 -32 263 278 42 89 chr11 39393023 39393214 -111390339 + L2 LINE L2 2625 2806 -508 222 105 0 0 chr11 39393464 39393502 -111390051 + (TC)n Simple_repeat Simple_repeat 2 39 0 180 0 0 0 chr11 39393502 39393522 -111390031 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 258 32 0 0 chr11 39393521 39393552 -111390001 + (GA)n Simple_repeat Simple_repeat 2 32 0 186 279 123 57 chr11 39395032 39395154 -111388399 + MIR SINE MIR 20 149 -113 523 305 21 42 chr11 39395267 39395457 -111388096 + LTR16A1 LTR ERVL 269 454 -3 232 213 0 66 chr11 39395960 39396021 -111387532 + MIR SINE MIR 206 262 0 270 0 0 0 chr11 39397205 39397235 -111386318 + (CA)n Simple_repeat Simple_repeat 2 31 0 448 156 52 12 chr11 39397284 39397457 -111386096 + (TA)n Simple_repeat Simple_repeat 1 180 0 396 173 56 25 chr11 39397487 39397649 -111385904 + (TATAA)n Simple_repeat Simple_repeat 4 170 0 248 161 35 35 chr11 39397779 39397866 -111385687 + (TATAA)n Simple_repeat Simple_repeat 5 91 0 256 62 124 8 chr11 39397877 39398006 -111385547 + (TA)n Simple_repeat Simple_repeat 1 144 0 202 333 60 26 chr11 39398212 39398329 -111385224 - L2 LINE L2 -22 3291 3171 2300 246 32 20 chr11 39398406 39399055 -111384498 + L1MB7 LINE L1 5474 6130 -54 357 289 39 0 chr11 39399070 39399174 -111384379 - MLT1G1 LTR MaLR -61 534 427 238 305 191 43 chr11 39399235 39399376 -111384177 - MLT1G1 LTR MaLR -298 257 96 2077 171 13 0 chr11 39399377 39399756 -111383797 + L1MB1 LINE L1 5778 6161 -7 187 314 20 69 chr11 39399809 39399911 -111383642 - L2 LINE L2 -42 3271 3175 270 0 0 0 chr11 39400100 39400130 -111383423 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 918 156 78 22 chr11 39400130 39400309 -111383244 - AluSg/x SINE Alu -28 282 94 319 36 455 0 chr11 39400833 39400888 -111382665 - MADE1 DNA Mariner 0 80 1 221 362 11 21 chr11 39401914 39402008 -111381545 - L2 LINE L2 -29 3284 3192 1364 273 68 47 chr11 39403500 39404013 -111379540 + MLT1E LTR MaLR 70 593 0 24 32 0 0 chr11 39404982 39405013 -111378540 + AT_rich Low_complexity Low_complexity 1 31 0 730 308 53 4 chr11 39405033 39405280 -111378273 + MIR SINE MIR 2 260 -2 198 71 0 0 chr11 39408133 39408161 -111375392 + (TC)n Simple_repeat Simple_repeat 1 28 0 550 269 48 44 chr11 39408955 39409182 -111374371 + L2 LINE L2 2808 3035 -278 345 336 67 0 chr11 39409224 39409343 -111374210 + L2 LINE L2 3169 3295 -18 32 57 0 0 chr11 39410565 39410618 -111372935 + AT_rich Low_complexity Low_complexity 1 53 0 1589 209 3 7 chr11 39410743 39411039 -111372514 - AluJb SINE Alu -17 295 1 849 249 150 19 chr11 39411132 39411618 -111371935 + MER114 LTR ERV 39 588 -60 1097 289 92 57 chr11 39412071 39412646 -111370907 - MLT1G1 LTR MaLR 0 595 1 1932 128 90 29 chr11 39413733 39414076 -111369477 + THE1B LTR MaLR 1 364 0 10836 111 23 0 chr11 39414076 39415620 -111367933 + THE1B-int LTR MaLR 1 1580 0 1884 142 74 42 chr11 39415620 39415973 -111367580 + THE1B LTR MaLR 1 364 0 523 329 65 10 chr11 39416620 39417021 -111366532 + L1ME4a LINE L1 5512 5934 -187 335 22 0 22 chr11 39417033 39417078 -111366475 + (CA)n Simple_repeat Simple_repeat 2 45 0 12841 237 29 23 chr11 39417649 39420017 -111363536 + L1PA16 LINE L1 2181 4532 -3072 7506 38 12 0 chr11 39420017 39420903 -111362650 + MER11D LTR ERVK 1 897 0 12841 237 29 23 chr11 39420903 39422130 -111361423 + L1PA16 LINE L1 4532 5750 -1854 1836 150 55 17 chr11 39422130 39422491 -111361062 - THE1C LTR MaLR 0 375 1 12841 237 29 23 chr11 39422491 39424347 -111359206 + L1PA16 LINE L1 5750 7604 0 1904 295 35 25 chr11 39424626 39425490 -111358063 - L1MEc LINE L1 -5475 921 50 290 169 96 60 chr11 39427148 39427231 -111356322 - L2 LINE L2 -69 3244 3159 268 191 0 0 chr11 39427238 39427285 -111356268 + AluJo SINE Alu 1 47 -253 1994 132 72 26 chr11 39427285 39427633 -111355920 - THE1B LTR MaLR 0 364 1 11342 101 16 0 chr11 39427633 39429188 -111354365 - THE1B-int LTR MaLR 0 1580 1 1971 149 55 23 chr11 39429191 39429539 -111354014 - THE1B LTR MaLR -3 361 3 1530 174 4 26 chr11 39429540 39429805 -111353748 + AluJo SINE Alu 42 300 -12 185 339 85 79 chr11 39430020 39430209 -111353344 - L2 LINE L2 -411 2903 2714 2380 157 38 0 chr11 39430223 39430643 -111352910 - L1MB3 LINE L1 0 6183 5748 747 109 0 9 chr11 39430643 39430753 -111352800 - AluSg/x SINE Alu -38 274 166 7339 40 1 1 chr11 39430753 39432371 -111351182 + L1PA4 LINE L1 4535 6153 -2 588 187 0 8 chr11 39432372 39432495 -111351058 + L1M3 LINE L1 5652 5773 -410 1103 126 0 0 chr11 39432496 39432647 -111350906 + AluSq/x SINE Alu 1 151 -162 764 314 167 16 chr11 39432662 39433236 -111350317 - L2 LINE L2 -609 2705 2045 1477 302 70 4 chr11 39433499 39434013 -111349540 + MLT1H LTR MaLR 2 549 0 279 389 36 6 chr11 39434188 39434355 -111349198 + MIR3 SINE MIR 30 201 -7 350 271 128 33 chr11 39436218 39436491 -111347062 + L1ME4a LINE L1 5816 6114 -7 429 295 67 58 chr11 39437132 39437356 -111346197 + MIR SINE MIR 2 227 -35 29 28 0 0 chr11 39437614 39437650 -111345903 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 39438600 39438621 -111344932 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr11 39439614 39439650 -111343903 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 39439777 39439798 -111343755 + AT_rich Low_complexity Low_complexity 1 21 0 328 319 66 16 chr11 39440407 39440589 -111342964 - MIR SINE MIR -6 256 66 760 234 33 5 chr11 39440830 39441014 -111342539 + MER5A DNA MER1_type 1 189 0 191 287 0 81 chr11 39441817 39441904 -111341649 - L2 LINE L2 -9 3304 3225 572 229 0 0 chr11 39441904 39442013 -111341540 + FLAM_A SINE Alu 1 109 -33 24 32 0 0 chr11 39442020 39442051 -111341502 + AT_rich Low_complexity Low_complexity 1 31 0 260 306 14 0 chr11 39442252 39442324 -111341229 - L2 LINE L2 -254 3018 2946 2354 191 12 5 chr11 39443226 39443649 -111339904 - MSTB LTR MaLR 0 426 1 25 51 0 0 chr11 39443849 39443888 -111339665 + AT_rich Low_complexity Low_complexity 1 39 0 587 241 0 36 chr11 39444142 39444279 -111339274 + FLAM_A SINE Alu 1 132 -1 22 35 0 0 chr11 39446161 39446190 -111337363 + AT_rich Low_complexity Low_complexity 1 29 0 871 285 102 39 chr11 39446194 39446654 -111336899 + LTR16C LTR ERVL 3 491 0 238 342 89 37 chr11 39446681 39446871 -111336682 - MIR SINE MIR -13 249 50 1893 161 0 37 chr11 39447080 39447402 -111336151 + AluJo SINE Alu 1 310 -2 349 230 6 6 chr11 39447519 39447693 -111335860 + (TG)n Simple_repeat Simple_repeat 1 174 0 310 326 65 7 chr11 39448405 39448543 -111335010 + MIR SINE MIR 102 247 -15 181 344 61 31 chr11 39449059 39449222 -111334331 + L2 LINE L2 2613 2780 -534 23 0 0 0 chr11 39449592 39449615 -111333938 + AT_rich Low_complexity Low_complexity 1 23 0 1879 182 38 9 chr11 39449702 39450048 -111333505 - MLT1A1 LTR MaLR -2 363 8 1025 215 26 4 chr11 39450049 39450282 -111333271 - MLT1A1-int LTR MaLR -13 1722 1485 471 274 123 12 chr11 39450283 39450478 -111333075 + LTR1 LTR ERV1 28 235 -568 501 220 75 31 chr11 39450507 39450647 -111332906 + LTR28 LTR ERV1 324 423 -11 319 209 39 101 chr11 39450729 39450858 -111332695 + LTR28 LTR ERV1 900 1020 0 4205 238 94 36 chr11 39450864 39452188 -111331365 - MLT1A1-int LTR MaLR -211 1440 11 1532 215 13 48 chr11 39452200 39452576 -111330977 - MLT1A1 LTR MaLR -2 363 1 209 216 108 54 chr11 39452800 39452874 -111330679 - L2 LINE L2 -8 3305 3228 180 125 0 0 chr11 39453710 39453742 -111329811 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 589 219 49 55 chr11 39453943 39453972 -111329581 - MER20 DNA MER1_type -56 163 135 3028 150 19 21 chr11 39453972 39454538 -111329015 - MER34B LTR ERV1 0 565 1 589 219 49 55 chr11 39454538 39454672 -111328881 - MER20 DNA MER1_type -84 135 1 1483 170 18 98 chr11 39454777 39455113 -111328440 + AluJo SINE Alu 1 309 -3 3695 166 9 0 chr11 39455126 39455775 -111327778 - MER72 LTR ERV1 -67 655 1 234 0 0 0 chr11 39456192 39456218 -111327335 + (CA)n Simple_repeat Simple_repeat 1 26 0 1700 139 75 42 chr11 39456721 39457081 -111326472 + THE1C LTR MaLR 1 372 -3 196 333 113 27 chr11 39457471 39457621 -111325932 - MIR3 SINE MIR -9 199 37 1451 196 108 23 chr11 39457745 39458351 -111325202 + MER39 LTR ERV1 1 707 0 699 165 8 15 chr11 39459461 39459594 -111323959 - FLAM_C SINE Alu -1 132 1 234 267 17 17 chr11 39460215 39460275 -111323278 + MLT1I LTR MaLR 206 265 -144 1344 177 28 28 chr11 39460368 39460651 -111322902 + MER49 LTR ERV1 1 283 -640 1332 174 34 133 chr11 39460655 39460961 -111322592 + MER4E LTR ERV1 72 328 -451 862 156 0 15 chr11 39460961 39461096 -111322457 + FLAM_C SINE Alu 1 133 0 1332 174 34 133 chr11 39461096 39461204 -111322349 + MER4E LTR ERV1 328 445 -334 950 202 0 0 chr11 39461210 39461378 -111322175 - AluJb SINE Alu -13 299 132 1117 121 68 5 chr11 39461495 39461702 -111321851 + MER4D LTR ERV1 684 903 0 371 241 135 7 chr11 39462856 39462997 -111320556 + MER50 LTR ERV1 10 168 -566 4923 49 0 0 chr11 39463124 39463715 -111319838 - LTR10C LTR ERV1 0 591 1 979 183 18 49 chr11 39463860 39464084 -111319469 + MER50 LTR ERV1 518 734 0 2142 168 17 26 chr11 39464144 39464561 -111318992 + MER61B LTR ERV1 13 425 0 233 313 12 0 chr11 39464861 39464941 -111318612 - MER110A LTR ERV1 0 468 388 201 219 12 24 chr11 39464996 39465078 -111318475 + A-rich Low_complexity Low_complexity 4 84 0 379 230 60 20 chr11 39465778 39465878 -111317675 + L1MC4 LINE L1 6614 6717 -1325 248 108 0 0 chr11 39466056 39466093 -111317460 + Alu SINE Alu 250 286 -16 21 0 0 0 chr11 39466093 39466114 -111317439 + AT_rich Low_complexity Low_complexity 1 21 0 867 183 0 0 chr11 39466114 39466251 -111317302 - FRAM SINE Alu -39 137 1 303 28 0 0 chr11 39466523 39466559 -111316994 + (CA)n Simple_repeat Simple_repeat 1 36 0 1191 195 105 78 chr11 39466667 39467190 -111316363 - MER67C LTR ERV1 -5 509 15 1646 158 24 24 chr11 39467513 39467787 -111315766 + MER2 DNA MER2_type 11 287 -58 2308 110 0 0 chr11 39467787 39468087 -111315466 + AluSq SINE Alu 1 300 -13 1646 158 24 24 chr11 39468087 39468142 -111315411 + MER2 DNA MER2_type 286 340 -5 304 341 85 6 chr11 39468286 39468462 -111315091 - MIR SINE MIR -26 236 47 343 286 155 56 chr11 39468481 39468785 -111314768 + LTR52 LTR ERVL 18 351 -70 284 346 39 28 chr11 39469441 39469623 -111313930 + MLT1K LTR MaLR 142 325 -263 376 241 0 54 chr11 39469711 39469823 -111313730 + MLT1K LTR MaLR 467 572 -16 1573 211 10 3 chr11 39469833 39470132 -111313421 + AluJo SINE Alu 1 301 -11 295 317 32 0 chr11 39470186 39470309 -111313244 + MER94 DNA DNA 5 131 -3 531 124 8 16 chr11 39470475 39470604 -111312949 + (TCTA)n Simple_repeat Simple_repeat 3 130 0 692 315 55 52 chr11 39470843 39471338 -111312215 + MLT1L LTR MaLR 120 615 0 359 182 0 23 chr11 39471519 39471607 -111311946 + CT-rich Low_complexity Low_complexity 6 91 0 315 350 96 19 chr11 39471954 39472111 -111311442 + MIR3 SINE MIR 40 208 0 1985 166 119 29 chr11 39472169 39472615 -111310938 + MLT1D LTR MaLR 1 486 -19 2168 206 35 62 chr11 39472615 39472944 -111310609 - MLT2B3 LTR ERVL 0 554 245 495 0 0 0 chr11 39472944 39472999 -111310554 + (GA)n Simple_repeat Simple_repeat 2 56 0 2168 206 35 62 chr11 39472999 39473238 -111310315 - MLT2B3 LTR ERVL -309 245 1 240 279 0 13 chr11 39474102 39474181 -111309372 - MER116 DNA Mariner -1 79 2 319 227 68 23 chr11 39474629 39474717 -111308836 + MIR SINE MIR 116 207 -55 1624 168 94 41 chr11 39476723 39477117 -111306436 - MSTB1 LTR MaLR 0 432 18 6379 224 67 11 chr11 39477131 39478695 -111304858 - MSTB1-int LTR MaLR 0 1651 1 2013 183 69 2 chr11 39478695 39479100 -111304453 - MSTB1 LTR MaLR 0 432 1 2336 106 3 0 chr11 39479447 39479759 -111303794 - AluSp SINE Alu 0 313 1 1398 243 96 30 chr11 39481549 39482048 -111301505 - MLT1H LTR MaLR 0 549 18 243 0 0 0 chr11 39482051 39482078 -111301475 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 189 0 0 0 chr11 39482955 39482976 -111300577 + (T)n Simple_repeat Simple_repeat 1 21 0 24 67 0 0 chr11 39483210 39483255 -111300298 + AT_rich Low_complexity Low_complexity 1 45 0 2423 190 30 13 chr11 39483425 39483963 -111299590 - MER34C LTR ERV1 -2 583 37 343 307 214 0 chr11 39484011 39484088 -111299465 + MIR SINE MIR 22 81 -181 2303 90 7 0 chr11 39484088 39484389 -111299164 - AluY SINE Alu -3 308 6 343 307 214 0 chr11 39484389 39484503 -111299050 + MIR SINE MIR 81 254 -8 2253 77 40 0 chr11 39484768 39485067 -111298486 + AluY SINE Alu 1 311 0 277 315 22 0 chr11 39485458 39485550 -111298003 + MIR3 SINE MIR 110 203 -5 923 224 76 16 chr11 39486348 39486598 -111296955 - MER44D DNA MER2_type 0 605 469 5088 128 14 21 chr11 39486609 39487530 -111296023 - L1MA3 LINE L1 -102 7622 6708 * 28278 122 8 63 chr11 39487517 39494027 -111289526 - L1PA7 LINE L1 -1 6153 12 11841 174 27 25 chr11 39494037 39494189 -111289364 - L1MA3 LINE L1 -860 6705 6555 216 0 0 0 chr11 39494189 39494213 -111289340 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 11841 174 27 25 chr11 39494213 39498776 -111284777 - L1MA3 LINE L1 -1010 6555 1980 2499 122 6 0 chr11 39498778 39499140 -111284413 - THE1B LTR MaLR 0 364 1 9235 112 62 37 chr11 39499140 39499318 -111284235 - THE1B-int LTR MaLR 0 1580 1408 2345 105 0 3 chr11 39499318 39499624 -111283929 + AluY SINE Alu 1 305 -6 9235 112 62 37 chr11 39499624 39500986 -111282567 - THE1B-int LTR MaLR -172 1408 1 2293 120 14 0 chr11 39500986 39501337 -111282216 - THE1B LTR MaLR 0 364 9 10295 178 8 20 chr11 39501356 39503262 -111280291 - L1MA3 LINE L1 -5611 1954 72 2322 159 26 35 chr11 39503274 39503726 -111279827 - MER44D DNA MER2_type -250 455 8 26 101 0 0 chr11 39504259 39504348 -111279205 + AT_rich Low_complexity Low_complexity 1 89 0 23 78 0 0 chr11 39504493 39504544 -111279009 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr11 39504570 39504598 -111278955 + AT_rich Low_complexity Low_complexity 1 28 0 1280 94 19 0 chr11 39504819 39504978 -111278575 - AluSc SINE Alu -147 162 1 8973 180 60 13 chr11 39506268 39507945 -111275608 - MER52A LTR ERV1 0 1755 1 288 282 10 153 chr11 39508013 39508131 -111275422 - MIR SINE MIR 0 262 183 1437 164 119 8 chr11 39508131 39508399 -111275154 + AluJb SINE Alu 5 302 -10 288 282 10 153 chr11 39508399 39508482 -111275071 - MIR SINE MIR -79 183 90 217 227 0 0 chr11 39508581 39508625 -111274928 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 892 279 163 25 chr11 39510364 39510805 -111272748 - MLT1L LTR MaLR -2 613 112 536 230 149 0 chr11 39512108 39512258 -111271295 - MER5A DNA MER1_type -10 179 4 409 134 103 41 chr11 39512638 39512735 -111270818 - MER53 DNA DNA -6 183 81 228 98 0 24 chr11 39513279 39513320 -111270233 - LTR48 LTR ERV1 -51 736 697 24 77 0 0 chr11 39514149 39514201 -111269352 + AT_rich Low_complexity Low_complexity 1 52 0 679 223 87 50 chr11 39514520 39514577 -111268976 - MER39 LTR ERV1 -77 630 577 2419 133 46 12 chr11 39514577 39514991 -111268562 + MSTA LTR MaLR 1 428 0 679 223 87 50 chr11 39514991 39515223 -111268330 - MER39 LTR ERV1 -130 577 157 542 252 71 8 chr11 39515765 39515892 -111267661 - MER5B DNA MER1_type -40 138 4 2071 174 92 15 chr11 39515895 39516500 -111267053 - LTR8A LTR ERV1 0 727 5 427 242 23 31 chr11 39516522 39516650 -111266903 + MIR SINE MIR 87 213 -49 4024 168 26 11 chr11 39516657 39517373 -111266180 - MER50 LTR ERV1 -7 727 1 620 279 27 0 chr11 39517437 39517584 -111265969 - MIR SINE MIR 0 262 112 682 69 0 0 chr11 39517615 39517702 -111265851 - AluY SINE Alu -10 301 215 31 26 0 0 chr11 39517823 39517861 -111265692 + AT_rich Low_complexity Low_complexity 1 38 0 1295 200 26 56 chr11 39518649 39518954 -111264599 - AluJo SINE Alu -5 297 2 365 275 210 7 chr11 39519028 39519337 -111264216 + Tigger8 DNA MER2_type 206 577 -89 302 253 258 13 chr11 39519905 39520130 -111263423 - HAL1b LINE L1 -7 1341 1062 1643 272 29 26 chr11 39520187 39520837 -111262716 - HAL1b LINE L1 -400 948 297 691 208 50 19 chr11 39520864 39521023 -111262530 - FRAM SINE Alu -17 159 1 415 245 112 47 chr11 39521172 39521405 -111262148 + L2 LINE L2 2958 3205 -108 2245 113 0 10 chr11 39524201 39524510 -111259043 - AluSx SINE Alu -6 306 1 2038 148 7 0 chr11 39524510 39524813 -111258740 - AluJb SINE Alu -5 307 3 947 125 36 42 chr11 39524855 39525023 -111258530 - AluSg/x SINE Alu -20 292 126 239 246 0 0 chr11 39525029 39525090 -111258463 - AluJ/monomer SINE Alu -7 295 235 772 178 0 15 chr11 39525217 39525352 -111258201 - FLAM_C SINE Alu 0 133 1 350 294 18 18 chr11 39525813 39525922 -111257631 + CT-rich Low_complexity Low_complexity 6 114 0 477 195 34 8 chr11 39526313 39526431 -111257122 + MER53 DNA DNA 3 123 -66 219 333 0 0 chr11 39526500 39526572 -111256981 + (TA)n Simple_repeat Simple_repeat 1 72 0 282 175 0 0 chr11 39526572 39526629 -111256924 + MER53 DNA DNA 129 185 -4 42218 37 25 1 chr11 39527320 39533325 -111250228 - L1PA2 LINE L1 -2 6153 1 1522 246 35 3 chr11 39533337 39533675 -111249878 + MLT2D LTR ERVL 18 366 -48 303 49 0 0 chr11 39533678 39533719 -111249834 + (TC)n Simple_repeat Simple_repeat 2 42 0 428 49 0 0 chr11 39533749 39533814 -111249739 + MLT2C2 LTR ERVL 416 464 0 387 0 0 0 chr11 39533845 39533888 -111249665 + (TA)n Simple_repeat Simple_repeat 1 43 0 1850 167 36 27 chr11 39533988 39534318 -111249235 - MER1B DNA MER1_type 0 339 7 193 253 0 96 chr11 39534680 39534763 -111248790 + MER5A DNA MER1_type 29 103 -86 197 424 8 0 chr11 39534913 39535045 -111248508 - L2 LINE L2 -492 2822 2690 21 36 0 0 chr11 39535156 39535184 -111248369 + AT_rich Low_complexity Low_complexity 1 28 0 1112 199 43 8 chr11 39535372 39535628 -111247925 - MER31A LTR ERV1 0 485 221 323 300 127 0 chr11 39537849 39537959 -111245594 - L2 LINE L2 0 3272 3149 482 209 82 37 chr11 39538108 39538242 -111245311 - MER3 DNA MER1_type -68 141 2 446 255 60 72 chr11 39539052 39539303 -111244250 + L1ME LINE L1 539 786 -5284 1092 246 73 24 chr11 39539310 39539710 -111243843 + L1ME2 LINE L1 5743 6333 -1 2074 60 56 3 chr11 39539815 39540100 -111243453 - AluY SINE Alu -11 300 1 418 362 69 11 chr11 39540229 39540417 -111243136 - MIR SINE MIR -48 214 16 198 0 0 0 chr11 39540503 39540525 -111243028 + (TA)n Simple_repeat Simple_repeat 2 23 0 24 0 0 0 chr11 39540845 39540869 -111242684 + AT_rich Low_complexity Low_complexity 1 24 0 211 296 104 17 chr11 39541378 39541493 -111242060 + MIR SINE MIR 81 205 -57 432 258 21 0 chr11 39542104 39542201 -111241352 - MER45A DNA AcHobo -1 177 79 284 281 223 14 chr11 39542610 39542749 -111240804 + MIR3 SINE MIR 27 194 -14 315 206 14 14 chr11 39543291 39543364 -111240189 - MLT1I LTR MaLR -14 395 323 243 362 9 0 chr11 39543550 39543655 -111239898 - MLT1I LTR MaLR -256 153 48 204 363 70 56 chr11 39544576 39544791 -111238762 - L2 LINE L2 -5 3267 3050 289 367 109 34 chr11 39544875 39545496 -111238057 - L2 LINE L2 -337 2977 2310 33 56 0 0 chr11 39545627 39545681 -111237872 + AT_rich Low_complexity Low_complexity 1 54 0 460 302 62 22 chr11 39546452 39546631 -111236922 - MLT1H LTR MaLR 0 549 364 27 0 0 0 chr11 39546886 39546913 -111236640 + AT_rich Low_complexity Low_complexity 1 27 0 239 316 191 7 chr11 39548853 39548989 -111234564 - MIR SINE MIR 0 262 102 180 0 0 0 chr11 39549003 39549023 -111234530 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 217 299 73 66 chr11 39549117 39549254 -111234299 + L3 LINE CR1 1416 1553 -24 23 0 0 0 chr11 39549890 39549913 -111233640 + AT_rich Low_complexity Low_complexity 1 23 0 2231 99 0 13 chr11 39549964 39550299 -111233254 - AluSg SINE Alu 0 310 1 25 0 0 0 chr11 39550418 39550443 -111233110 + AT_rich Low_complexity Low_complexity 1 25 0 259 235 19 148 chr11 39550509 39550671 -111232882 - L2 LINE L2 -73 3240 3100 701 294 18 18 chr11 39550675 39550903 -111232650 - L2 LINE L2 -823 2491 2264 971 333 15 3 chr11 39550927 39551266 -111232287 - LTR16C LTR ERVL -18 473 131 190 256 49 12 chr11 39551803 39551885 -111231668 - L2 LINE L2 -1604 1710 1626 187 292 94 23 chr11 39552044 39552215 -111231338 - L2 LINE L2 -2 3311 3129 22 0 0 0 chr11 39552533 39552555 -111230998 + AT_rich Low_complexity Low_complexity 1 22 0 255 31 0 0 chr11 39553025 39553057 -111230496 + (TG)n Simple_repeat Simple_repeat 2 33 0 1771 202 34 11 chr11 39553257 39553608 -111229945 - MLT1A1 LTR MaLR 0 365 7 1853 285 49 11 chr11 39553747 39554529 -111229024 - L1M4 LINE L1 -2020 4126 3316 31 104 0 0 chr11 39555003 39555118 -111228435 + AT_rich Low_complexity Low_complexity 1 115 0 221 286 63 0 chr11 39555218 39555281 -111228272 + L2 LINE L2 3205 3271 -1 2101 135 59 9 chr11 39556550 39556890 -111226663 - THE1B LTR MaLR -7 357 1 705 329 45 30 chr11 39556999 39557333 -111226220 - LTR16A LTR ERVL 0 450 112 1517 190 72 0 chr11 39557535 39557840 -111225713 - L1PB4 LINE L1 0 6156 5830 * 2978 227 6 26 chr11 39557831 39558571 -111224982 + L1 LINE L1 4644 5367 -788 645 241 91 20 chr11 39559048 39559247 -111224306 + MLT1E LTR MaLR 9 221 -372 316 294 0 0 chr11 39559278 39559346 -111224207 - MER2 DNA MER2_type -277 68 1 1244 212 53 7 chr11 39559354 39559656 -111223897 - L1MCa LINE L1 -1880 4546 4231 2409 121 17 40 chr11 39559729 39560134 -111223419 + MER75 DNA T2_type 119 514 0 5406 261 30 15 chr11 39560137 39561948 -111221605 - L1MCa LINE L1 -2196 4230 2392 3728 241 20 25 chr11 39561952 39562324 -111221229 + MER21B LTR ERV1 5 377 -486 2047 154 16 19 chr11 39562324 39562700 -111220853 + THE1C LTR MaLR 1 375 0 3728 241 20 25 chr11 39562700 39563160 -111220393 + MER21B LTR ERV1 377 833 -30 1549 157 75 0 chr11 39563188 39563506 -111220047 - L1MCa LINE L1 -4030 2396 2055 1159 213 126 68 chr11 39563509 39563586 -111219967 + MER4C LTR ERV1 1 72 -393 330 26 0 0 chr11 39563586 39563625 -111219928 + (CA)n Simple_repeat Simple_repeat 1 39 0 1159 213 126 68 chr11 39563625 39564130 -111219423 + MER4C LTR ERV1 72 457 -8 220 209 0 0 chr11 39564144 39564187 -111219366 + (CATA)n Simple_repeat Simple_repeat 4 46 0 8130 186 105 9 chr11 39564190 39564829 -111218724 - L1MCa LINE L1 -4366 2060 1483 603 74 0 0 chr11 39564829 39564910 -111218643 + (TTCC)n Simple_repeat Simple_repeat 2 82 0 8130 186 105 9 chr11 39564910 39564932 -111218621 - L1MCa LINE L1 -4943 1483 1465 552 113 0 0 chr11 39564932 39565012 -111218541 + MADE1 DNA Mariner 1 80 0 8130 186 105 9 chr11 39565012 39566204 -111217349 - L1MCa LINE L1 -4961 1465 29 581 343 58 36 chr11 39566206 39566539 -111217014 - HAL1 LINE L1 -2079 428 82 1972 110 3 7 chr11 39566539 39566854 -111216699 + AluSx SINE Alu 1 314 0 581 343 58 36 chr11 39566854 39566930 -111216623 - HAL1 LINE L1 -2425 82 9 212 260 40 0 chr11 39566958 39567008 -111216545 - L3b LINE CR1 -255 1328 1277 2338 70 3 3 chr11 39568325 39568625 -111214928 - AluY SINE Alu -11 300 1 624 332 78 56 chr11 39569394 39569974 -111213579 - L2 LINE L2 0 3313 2717 344 241 12 176 chr11 39569980 39570304 -111213249 - L2 LINE L2 -5 3308 3038 470 338 73 0 chr11 39571348 39571499 -111212054 + MER91A DNA MER1_type 35 196 0 615 318 76 8 chr11 39571525 39571761 -111211792 - MIR SINE MIR -4 258 7 223 255 0 0 chr11 39572873 39572924 -111210629 - L2 LINE L2 0 3313 3263 1732 292 44 81 chr11 39573256 39574578 -111208975 + L2 LINE L2 2024 3290 -23 13782 138 33 14 chr11 39574579 39575082 -111208471 - Tigger1 DNA MER2_type 0 2418 1926 2038 128 3 17 chr11 39575082 39575378 -111208175 - AluSx SINE Alu -20 292 1 13782 138 33 14 chr11 39575378 39577247 -111206306 - Tigger1 DNA MER2_type -492 1926 1 210 118 0 0 chr11 39577255 39577289 -111206264 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 322 384 59 8 chr11 39577360 39577615 -111205938 - L2 LINE L2 -715 2599 2332 1332 177 105 0 chr11 39580109 39580452 -111203101 - L1MB1 LINE L1 -60 6108 5705 729 212 36 0 chr11 39580452 39580617 -111202936 - MER39 LTR ERV1 0 707 537 3231 114 37 2 chr11 39580622 39581113 -111202440 - L1PA11 LINE L1 -1 6173 5666 243 242 43 97 chr11 39581213 39581473 -111202080 - MER39 LTR ERV1 -203 504 219 * 274 222 101 71 chr11 39581447 39581546 -111202007 - LTR48B LTR ERV1 -539 105 4 2232 189 12 27 chr11 39581549 39582031 -111201522 - L1MB1 LINE L1 -460 5708 5238 2355 84 68 11 chr11 39582031 39582386 -111201167 + THE1C LTR MaLR 1 375 0 2232 189 12 27 chr11 39582386 39582481 -111201072 - L1MB1 LINE L1 -930 5238 5143 718 237 41 8 chr11 39582482 39582668 -111200885 + MLT1A1 LTR MaLR 202 365 0 2623 210 50 10 chr11 39582668 39583345 -111200208 - L1MB1 LINE L1 -1581 4565 3862 233 191 21 0 chr11 39583346 39583390 -111200163 - MLT2B1 LTR ERVL 0 515 471 1530 134 40 0 chr11 39583390 39583637 -111199916 - Tigger2 DNA MER2_type 0 2718 2462 4056 172 12 21 chr11 39583687 39584449 -111199104 - Tigger2 DNA MER2_type -1961 757 3 229 286 0 0 chr11 39584488 39584537 -111199016 + Tigger3(Golem) DNA MER2_type 1 49 -2980 231 234 0 21 chr11 39584660 39584707 -111198846 + Tigger3(Golem) DNA MER2_type 2983 3028 -1 535 246 0 0 chr11 39584735 39584849 -111198704 - MLT2B1 LTR ERVL -71 444 331 * 731 145 0 30 chr11 39584847 39584978 -111198575 + Tigger2 DNA MER2_type 253 379 -2339 1698 168 26 41 chr11 39584980 39585246 -111198307 - MLT2B1 LTR ERVL -183 337 76 2031 130 7 10 chr11 39585246 39585539 -111198014 - AluSx SINE Alu -20 292 1 1698 168 26 41 chr11 39585539 39585612 -111197941 - MLT2B1 LTR ERVL -444 76 3 2103 244 75 8 chr11 39585612 39586362 -111197191 - L1MB1 LINE L1 -2279 3867 3068 4126 77 8 65 chr11 39587071 39588162 -111195391 - MER11A LTR ERVK 0 1266 3 2136 190 41 24 chr11 39588165 39588629 -111194924 + LTR38 LTR ERV1 66 537 -19 1843 170 7 0 chr11 39589131 39589425 -111194128 - AluJb SINE Alu -16 296 1 1881 135 120 0 chr11 39589461 39589786 -111193767 - THE1B LTR MaLR 0 364 1 10942 116 11 0 chr11 39589789 39590872 -111192681 - THE1B-int LTR MaLR -3 1577 469 853 62 0 0 chr11 39590872 39590984 -111192569 - L1PA5 LINE L1 0 6154 6043 10942 116 11 0 chr11 39590984 39591459 -111192094 - THE1B-int LTR MaLR -1111 469 1 1622 159 132 15 chr11 39591459 39591785 -111191768 - THE1B LTR MaLR 0 364 1 1453 251 25 59 chr11 39591820 39592294 -111191259 + MLT1C LTR MaLR 1 458 -9 192 125 0 0 chr11 39593059 39593091 -111190462 + (CA)n Simple_repeat Simple_repeat 2 33 0 246 179 18 0 chr11 39593628 39593684 -111189869 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 21 0 0 0 chr11 39593913 39593934 -111189619 + AT_rich Low_complexity Low_complexity 1 21 0 206 287 20 10 chr11 39594120 39594221 -111189332 + (CATATA)n Simple_repeat Simple_repeat 1 102 0 * 247 188 31 16 chr11 39594175 39594239 -111189314 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 476 221 50 0 chr11 39594250 39594390 -111189163 - L1MB1 LINE L1 -3160 2986 2840 1304 254 25 78 chr11 39594392 39594825 -111188728 + MER77 LTR ERV1 186 595 -10 2252 284 52 42 chr11 39594932 39595754 -111187799 - L1MDa LINE L1 -5542 998 24 822 289 80 34 chr11 39595773 39595974 -111187579 - L1MEc LINE L1 -4331 2065 1875 1348 221 26 13 chr11 39595974 39596014 -111187539 - AluJb SINE Alu 0 312 274 414 0 0 0 chr11 39596014 39596060 -111187493 + (TC)n Simple_repeat Simple_repeat 2 47 0 1348 221 26 13 chr11 39596060 39596327 -111187226 - AluJb SINE Alu -38 274 1 822 289 80 34 chr11 39596327 39597313 -111186240 - L1MEc LINE L1 -4521 1875 783 5206 168 27 67 chr11 39597400 39598102 -111185451 - L1PA15 LINE L1 0 6165 5437 1997 138 3 0 chr11 39598102 39598385 -111185168 - AluSx SINE Alu -25 287 4 5206 168 27 67 chr11 39598385 39599787 -111183766 - L1PA15 LINE L1 -728 5437 4156 535 341 69 26 chr11 39599976 39600398 -111183155 - L1MEc LINE L1 -5918 478 39 897 174 90 0 chr11 39602502 39602657 -111180896 - AluJb SINE Alu -14 298 130 1142 272 80 31 chr11 39603400 39604120 -111179433 - L1ME3A LINE L1 -223 6016 5262 1318 298 53 24 chr11 39604485 39605335 -111178218 - L1ME3A LINE L1 -1305 4910 4036 358 304 114 5 chr11 39605397 39605598 -111177955 - L1ME3A LINE L1 -4101 2295 2073 2748 16 0 0 chr11 39605608 39605925 -111177628 - L1PA3 LINE L1 0 6155 5839 686 330 83 18 chr11 39606392 39606789 -111176764 - L2 LINE L2 -692 2622 2200 5007 142 65 61 chr11 39607330 39608464 -111175089 - Tigger3b DNA MER2_type -6 1225 1 511 328 127 4 chr11 39610279 39610508 -111173045 - MIR SINE MIR -4 258 2 3238 338 99 11 chr11 39610903 39612432 -111171121 + L2 LINE L2 30 1693 -1621 473 206 11 11 chr11 39612446 39612621 -111170932 + (TA)n Simple_repeat Simple_repeat 2 176 0 399 41 0 0 chr11 39612624 39612673 -111170880 + (CA)n Simple_repeat Simple_repeat 2 50 0 1156 316 28 30 chr11 39612678 39613325 -111170228 + L2 LINE L2 2662 3309 -4 386 338 43 30 chr11 39614488 39614790 -111168763 + MLT1I LTR MaLR 98 403 -6 236 281 30 52 chr11 39614815 39614950 -111168603 - L2 LINE L2 -243 3029 2898 248 331 118 7 chr11 39615177 39615313 -111168240 - L2 LINE L2 -610 2704 2554 857 277 42 0 chr11 39615790 39616003 -111167550 - MLT1A1 LTR MaLR 0 365 144 257 0 30 0 chr11 39616007 39616040 -111167513 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 4691 100 12 0 chr11 39616043 39616720 -111166833 - L1PA14 LINE L1 -9 6152 5468 851 205 0 0 chr11 39616720 39616876 -111166677 - MLT1A1 LTR MaLR -209 156 1 180 0 0 0 chr11 39620237 39620257 -111163296 + (CA)n Simple_repeat Simple_repeat 1 20 0 187 342 26 26 chr11 39620812 39620888 -111162665 - MIR3 SINE MIR -52 156 81 2618 100 11 5 chr11 39621754 39622125 -111161428 + THE1C LTR MaLR 1 373 -2 26 50 0 0 chr11 39623413 39623453 -111160100 + AT_rich Low_complexity Low_complexity 1 40 0 1715 221 11 3 chr11 39623860 39624222 -111159331 - MLT1A1 LTR MaLR 0 365 1 672 291 61 4 chr11 39625189 39625436 -111158117 - MIR SINE MIR 0 262 2 253 282 145 17 chr11 39625757 39625874 -111157679 - LTR33 LTR ERVL -153 368 237 625 259 24 24 chr11 39625900 39626066 -111157487 - LTR33 LTR ERVL -348 173 8 27 73 0 0 chr11 39626749 39626804 -111156749 + AT_rich Low_complexity Low_complexity 1 55 0 310 242 0 130 chr11 39627611 39627772 -111155781 - MIR SINE MIR -37 225 86 2329 52 0 55 chr11 39628371 39628681 -111154872 - AluY SINE Alu -18 293 1 345 189 25 15 chr11 39628707 39628815 -111154738 - MLT1I LTR MaLR -3 406 314 340 259 0 83 chr11 39628844 39628952 -111154601 - MLT1I LTR MaLR -310 99 1 311 216 136 0 chr11 39628952 39629040 -111154513 + MIR SINE MIR 142 241 -21 2159 149 15 0 chr11 39630663 39631005 -111152548 - MER7A DNA MER2_type 0 346 2 2309 128 6 6 chr11 39631166 39631511 -111152042 + THE1B LTR MaLR 3 347 -17 411 258 177 30 chr11 39631563 39631761 -111151792 + MIR SINE MIR 34 260 -2 485 275 25 0 chr11 39631781 39631901 -111151652 - MIR SINE MIR -65 197 75 253 318 139 29 chr11 39632085 39632258 -111151295 + MIR SINE MIR 65 256 -6 21 0 0 0 chr11 39632570 39632591 -111150962 + AT_rich Low_complexity Low_complexity 1 21 0 291 285 73 24 chr11 39632939 39633062 -111150491 - MIR SINE MIR -67 195 67 2664 107 31 13 chr11 39633633 39634018 -111149535 + MLT2A2 LTR ERVL 1 392 -61 198 0 0 0 chr11 39634019 39634041 -111149512 + (TC)n Simple_repeat Simple_repeat 2 23 0 253 90 33 90 chr11 39634041 39634163 -111149390 + (TA)n Simple_repeat Simple_repeat 1 115 0 309 333 0 0 chr11 39634164 39634254 -111149299 - L1MC4 LINE L1 -1339 6703 6614 * 328 258 0 43 chr11 39634188 39634281 -111149272 + L1MC4 LINE L1 6614 6702 -1340 301 333 0 0 chr11 39634280 39634370 -111149183 - L1MC4 LINE L1 -1339 6703 6614 * 297 197 0 0 chr11 39634377 39634438 -111149115 + (TA)n Simple_repeat Simple_repeat 1 61 0 238 210 16 0 chr11 39634441 39634503 -111149050 + L1MCa LINE L1 2006 2068 -4358 267 152 0 0 chr11 39634503 39634549 -111149004 + (TA)n Simple_repeat Simple_repeat 1 46 0 227 264 0 22 chr11 39634553 39634644 -111148909 + L1MC4 LINE L1 6615 6703 -1339 330 272 0 22 chr11 39634674 39634766 -111148787 + L1MC4 LINE L1 6614 6703 -1339 319 315 0 0 chr11 39634775 39634864 -111148689 + L1MC4 LINE L1 6615 6703 -1339 237 178 0 0 chr11 39634864 39634909 -111148644 + (TATATG)n Simple_repeat Simple_repeat 1 45 0 321 315 0 0 chr11 39634909 39634998 -111148555 + L1MC4 LINE L1 6615 6703 -1339 220 211 0 0 chr11 39634998 39635036 -111148517 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 312 282 47 0 chr11 39635036 39635121 -111148432 + L1MC4 LINE L1 6614 6702 -1340 241 275 0 29 chr11 39635122 39635262 -111148291 - L1MC4 LINE L1 -1339 6703 6614 227 140 0 40 chr11 39635248 39635298 -111148255 + L1MC4 LINE L1 6652 6699 -1343 * 535 236 7 25 chr11 39635301 39635573 -111147980 + (TATATG)n Simple_repeat Simple_repeat 1 267 0 244 244 0 51 chr11 39635597 39635675 -111147878 + L1MC4 LINE L1 6652 6725 -1317 7210 81 9 26 chr11 39635675 39636692 -111146861 + HERVL LTR ERVL 748 1747 -3907 3850 76 6 0 chr11 39636693 39637192 -111146361 + HERVL LTR ERVL 3038 3539 -2115 616 221 9 0 chr11 39637934 39638047 -111145506 + FLAM_A SINE Alu 2 115 -18 32 26 0 0 chr11 39638105 39638144 -111145409 + AT_rich Low_complexity Low_complexity 1 39 0 272 290 0 0 chr11 39638360 39638422 -111145131 + MIR SINE MIR 82 143 -65 359 177 34 17 chr11 39638439 39638614 -111144939 + (TA)n Simple_repeat Simple_repeat 1 178 0 297 215 21 0 chr11 39638650 39638794 -111144759 + (TA)n Simple_repeat Simple_repeat 1 147 0 196 302 35 12 chr11 39638799 39638885 -111144668 + MIR SINE MIR 162 249 -13 371 298 12 68 chr11 39639682 39639843 -111143710 - MER117 DNA MER1_type 0 197 46 471 280 23 34 chr11 39640468 39640643 -111142910 - MER69A DNA AcHobo -4 173 1 12131 129 13 53 chr11 39642621 39645492 -111138061 + L1PA7 LINE L1 9 2877 -3584 17087 104 4 8 chr11 39645492 39648565 -111134988 + L1PA7 LINE L1 3142 6221 -248 2177 122 7 0 chr11 39648565 39648869 -111134684 - AluSp SINE Alu -7 306 1 17087 104 4 8 chr11 39648869 39649116 -111134437 + L1PA7 LINE L1 6221 6467 -2 2002 155 0 0 chr11 39649334 39649625 -111133928 - AluSx SINE Alu -21 291 1 6103 221 47 20 chr11 39649996 39652902 -111130651 + L1PB3 LINE L1 3 2114 -4748 2409 76 0 0 chr11 39652902 39653216 -111130337 + L1PA8 LINE L1 5859 6172 0 6103 221 47 20 chr11 39653216 39654459 -111129094 + L1PB3 LINE L1 2114 3322 -3540 369 252 0 0 chr11 39654470 39654573 -111128980 + L1PB3 LINE L1 3618 3720 -3142 * 6401 205 20 16 chr11 39654562 39656555 -111126998 + L1PB3 LINE L1 4513 6510 -360 2410 123 0 0 chr11 39656665 39657022 -111126531 + L1PB3 LINE L1 6514 6870 0 367 428 33 8 chr11 39657117 39657360 -111126193 + L1MEc LINE L1 560 808 -5913 26 0 0 0 chr11 39657766 39657792 -111125761 + AT_rich Low_complexity Low_complexity 1 26 0 1529 278 80 54 chr11 39657793 39659707 -111123846 + L1MEc LINE L1 1152 3143 -3397 1202 343 97 41 chr11 39659744 39661196 -111122357 + ERVL LTR ERVL 2737 4235 -1250 422 149 27 0 chr11 39661423 39661497 -111122056 - MLT1F LTR MaLR -3 539 464 558 299 27 32 chr11 39661501 39661688 -111121865 - MLT1F LTR MaLR -350 192 7 592 331 34 45 chr11 39661700 39662053 -111121500 + ERVL LTR ERVL 4546 4894 -870 874 261 55 41 chr11 39662058 39662403 -111121150 - L1M4 LINE L1 -1235 4911 4562 314 329 32 51 chr11 39662414 39662562 -111120991 - LTR16A LTR ERVL 0 450 301 2086 137 21 61 chr11 39662562 39662941 -111120612 - THE1B LTR MaLR 0 364 1 10169 118 12 35 chr11 39662941 39664558 -111118995 - THE1B-int LTR MaLR 0 1580 1 2272 132 28 8 chr11 39664558 39664915 -111118638 - THE1B LTR MaLR 0 364 1 314 329 32 51 chr11 39664915 39664980 -111118573 - LTR16A LTR ERVL -146 304 239 187 290 90 40 chr11 39665732 39665832 -111117721 + L2 LINE L2 2947 3051 -221 1031 227 32 0 chr11 39666864 39667084 -111116469 + Charlie4 DNA MER1_type 64 290 -1671 3485 42 2 0 chr11 39667084 39667513 -111116040 - L1PA5 LINE L1 0 6154 5725 1955 106 0 32 chr11 39667514 39667798 -111115755 - AluY SINE Alu -36 275 1 198 378 25 8 chr11 39668209 39668328 -111115225 + L2 LINE L2 1803 1923 -1391 1438 222 43 0 chr11 39668710 39669034 -111114519 + MER58B DNA MER1_type 2 339 -2 240 304 14 0 chr11 39669113 39669182 -111114371 + MIR SINE MIR 87 156 -106 239 266 16 0 chr11 39669341 39669405 -111114148 - MLT1K LTR MaLR -2 586 522 23 33 0 0 chr11 39669407 39669437 -111114116 + AT_rich Low_complexity Low_complexity 1 30 0 224 167 45 15 chr11 39669454 39669520 -111114033 + (TA)n Simple_repeat Simple_repeat 1 68 0 23 0 0 0 chr11 39670382 39670405 -111113148 + AT_rich Low_complexity Low_complexity 1 23 0 1175 76 0 0 chr11 39670584 39670729 -111112824 + AluSq SINE Alu 75 219 -94 25 31 0 0 chr11 39671053 39671085 -111112468 + AT_rich Low_complexity Low_complexity 1 32 0 219 163 20 41 chr11 39671502 39671551 -111112002 + MIR SINE MIR 17 64 -198 432 0 0 0 chr11 39672253 39672301 -111111252 + (GA)n Simple_repeat Simple_repeat 1 48 0 274 286 83 0 chr11 39673067 39673151 -111110402 + MIR SINE MIR 81 171 -91 276 289 33 16 chr11 39673467 39673588 -111109965 + L2 LINE L2 2267 2389 -925 188 418 8 55 chr11 39673808 39674064 -111109489 + L2 LINE L2 2831 3074 -198 285 279 98 8 chr11 39674249 39674371 -111109182 + L2 LINE L2 3181 3313 0 288 356 86 6 chr11 39675337 39675511 -111108042 - MIR SINE MIR -74 188 1 25 31 0 0 chr11 39677344 39677376 -111106177 + AT_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr11 39677435 39677459 -111106094 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 904 306 160 16 chr11 39677627 39678311 -111105242 - L2 LINE L2 0 3313 2529 331 333 58 13 chr11 39678314 39678470 -111105083 - MIR SINE MIR -34 228 66 1311 96 62 10 chr11 39678863 39679072 -111104481 - AluYa5 SINE Alu -91 220 1 1179 254 112 65 chr11 39679073 39679808 -111103745 - L1MDa LINE L1 -1904 4740 3972 296 246 0 14 chr11 39679852 39679921 -111103632 + Tigger5 DNA MER2_type 2256 2323 0 429 292 25 5 chr11 39679923 39680125 -111103428 - L1MDa LINE L1 -2688 3956 3751 920 265 43 34 chr11 39680140 39680586 -111102967 - L1MDa LINE L1 -3530 3114 2665 945 228 18 60 chr11 39680715 39680996 -111102557 - LTR4 LTR ERV1 -11 585 317 434 241 150 115 chr11 39681084 39681424 -111102129 - LTR4 LTR ERV1 -239 357 6 347 310 37 36 chr11 39681459 39681813 -111101740 - L1MDa LINE L1 -3936 2708 1179 933 291 80 38 chr11 39681963 39682540 -111101013 - L1M4 LINE L1 -5067 1475 875 23 68 0 0 chr11 39684080 39684124 -111099429 + AT_rich Low_complexity Low_complexity 1 44 0 260 213 0 33 chr11 39684133 39684194 -111099359 + MLT1J LTR MaLR 1 59 -452 561 236 17 11 chr11 39685099 39685273 -111098280 + MER104 DNA MER2_type 2 176 -4 718 165 8 16 chr11 39685417 39685544 -111098009 + FRAM SINE Alu 37 162 -14 402 245 35 120 chr11 39685615 39685713 -111097840 - L2 LINE L2 -590 2724 2650 1961 136 0 3 chr11 39685713 39685999 -111097554 + AluSx SINE Alu 1 285 -27 402 245 35 120 chr11 39685999 39686100 -111097453 - L2 LINE L2 -664 2650 2542 301 222 105 72 chr11 39686130 39686283 -111097270 - L1MC5 LINE L1 -45 7916 7759 2025 90 4 0 chr11 39686318 39686574 -111096979 + AluSp SINE Alu 25 281 -32 24 0 0 0 chr11 39686698 39686722 -111096831 + AT_rich Low_complexity Low_complexity 1 24 0 1078 262 112 44 chr11 39686729 39687463 -111096090 + HAL1b LINE L1 335 1118 -230 23 0 0 0 chr11 39687489 39687512 -111096041 + AT_rich Low_complexity Low_complexity 1 23 0 229 138 17 17 chr11 39687556 39687614 -111095939 + (TA)n Simple_repeat Simple_repeat 1 58 0 30 0 0 0 chr11 39687708 39687738 -111095815 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 39687831 39687860 -111095693 + AT_rich Low_complexity Low_complexity 1 29 0 318 278 58 88 chr11 39688465 39688670 -111094883 - MLT1K LTR MaLR -162 426 228 630 318 18 9 chr11 39689588 39689811 -111093742 + MIR SINE MIR 9 233 -29 343 258 45 0 chr11 39691157 39691246 -111092307 + L1MC4 LINE L1 6613 6705 -1337 192 357 14 14 chr11 39691643 39691713 -111091840 + L2 LINE L2 3187 3256 -16 613 242 37 65 chr11 39691886 39692101 -111091452 - L2 LINE L2 0 3313 3105 1102 143 14 90 chr11 39692280 39692503 -111091050 + MER2 DNA MER2_type 1 206 -139 299 299 0 0 chr11 39692563 39692630 -111090923 + MER2 DNA MER2_type 279 345 0 7519 142 52 10 chr11 39693895 39695035 -111088518 + HSMAR2 DNA Mariner 2 1201 -101 4555 61 35 0 chr11 39695035 39695628 -111087925 + L1PA7 LINE L1 5530 6143 -11 7519 142 52 10 chr11 39695628 39695733 -111087820 + HSMAR2 DNA Mariner 1201 1300 -2 803 274 42 45 chr11 39695734 39696070 -111087483 - L1ME1 LINE L1 -25 6141 5807 * 4157 222 28 2 chr11 39696059 39697520 -111086033 - L1MB7 LINE L1 -12 6172 4670 752 248 35 0 chr11 39697507 39697709 -111085844 - L1ME1 LINE L1 -327 5839 5631 * 1610 157 69 39 chr11 39699171 39699535 -111084018 + THE1C LTR MaLR 1 375 0 1855 61 8 16 chr11 39699875 39700162 -111083391 + AluY SINE Alu 68 352 0 246 134 19 17 chr11 39700214 39700272 -111083281 + MLT1J2 LTR MaLR 362 501 -41 30 27 0 0 chr11 39700538 39700575 -111082978 + AT_rich Low_complexity Low_complexity 1 37 0 562 319 30 33 chr11 39700639 39700909 -111082644 + L2 LINE L2 3045 3313 0 22 0 0 0 chr11 39700977 39700999 -111082554 + AT_rich Low_complexity Low_complexity 1 22 0 500 250 108 0 chr11 39703172 39703320 -111080233 - FRAM SINE Alu -1 165 2 1891 199 18 0 chr11 39706238 39706580 -111076973 + MER7A DNA MER2_type 1 346 0 754 51 0 0 chr11 39707261 39707359 -111076194 + L1P LINE L1 4783 4880 -1266 21 57 0 0 chr11 39708158 39708193 -111075360 + AT_rich Low_complexity Low_complexity 1 35 0 560 115 35 46 chr11 39708200 39708330 -111075223 - L1MA4A LINE L1 -27 6276 6139 515 327 75 5 chr11 39709141 39709340 -111074213 - MIR SINE MIR -45 217 5 23 68 0 0 chr11 39709373 39709417 -111074136 + AT_rich Low_complexity Low_complexity 1 44 0 2084 195 31 0 chr11 39709495 39709915 -111073638 + L1MA2 LINE L1 3576 4008 -2138 1994 169 31 19 chr11 39709915 39710275 -111073278 - THE1B LTR MaLR 0 364 1 11467 105 6 2 chr11 39710275 39711848 -111071705 - THE1B-int LTR MaLR 0 1580 1 910 164 66 0 chr11 39711848 39712000 -111071553 - THE1B LTR MaLR 0 364 203 6431 144 45 49 chr11 39712106 39714414 -111069139 + L1MA2 LINE L1 4004 6304 0 40341 54 4 7 chr11 39714789 39717353 -111066200 - L1PA4 LINE L1 0 6155 3584 5862 77 5 292 chr11 39717353 39719235 -111064318 - SVA Other Other -2 1384 43 234 0 0 0 chr11 39719235 39719261 -111064292 + (GGGAGA)n Simple_repeat Simple_repeat 1 26 0 40341 54 4 7 chr11 39719261 39722633 -111060920 - L1PA4 LINE L1 -2569 3586 237 261 0 0 0 chr11 39723185 39723214 -111060339 + (TG)n Simple_repeat Simple_repeat 2 30 0 1022 202 0 5 chr11 39723831 39724029 -111059524 + MER3 DNA MER1_type 13 209 0 25 31 0 0 chr11 39724338 39724370 -111059183 + AT_rich Low_complexity Low_complexity 1 32 0 230 208 125 83 chr11 39724645 39724765 -111058788 - MLT1H LTR MaLR -314 235 111 2076 99 3 7 chr11 39725148 39725451 -111058102 + L1PA8 LINE L1 5866 6167 -5 337 304 96 50 chr11 39726806 39727046 -111056507 - L2 LINE L2 -469 2845 2595 225 0 0 0 chr11 39727779 39727804 -111055749 + (CA)n Simple_repeat Simple_repeat 2 26 0 1449 209 47 12 chr11 39728934 39729273 -111054280 - MLT1A1 LTR MaLR -4 361 11 923 277 105 49 chr11 39729300 39729709 -111053844 + MLT1H LTR MaLR 1 485 -64 1713 167 31 3 chr11 39729709 39729996 -111053557 - AluJb SINE Alu -17 295 1 923 277 105 49 chr11 39729996 39730063 -111053490 + MLT1H LTR MaLR 485 547 -2 1493 129 0 0 chr11 39730338 39730555 -111052998 - AluSg/x SINE Alu 0 310 94 242 331 70 32 chr11 39730761 39730918 -111052635 + MIR SINE MIR 10 172 -90 3142 29 5 0 chr11 39730927 39731303 -111052250 + L1PA4 LINE L1 5778 6155 0 566 224 5 107 chr11 39731339 39731417 -111052136 - MIR SINE MIR -4 258 174 1974 114 0 4 chr11 39731417 39731767 -111051786 - AluSg SINE Alu 0 349 1 566 224 5 107 chr11 39731767 39731883 -111051670 - MIR SINE MIR -88 174 83 333 271 0 0 chr11 39731885 39731955 -111051598 - Zaphod DNA AcHobo -2 4029 3960 224 57 0 29 chr11 39731955 39731990 -111051563 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 291 308 26 0 chr11 39732847 39732925 -111050628 - Zaphod DNA AcHobo -3951 80 1 256 375 0 0 chr11 39732939 39733011 -111050542 - MIR SINE MIR -188 74 3 384 230 40 20 chr11 39734195 39734295 -111049258 - MIR SINE MIR 0 262 161 21 0 0 0 chr11 39734651 39734672 -111048881 + AT_rich Low_complexity Low_complexity 1 21 0 236 212 8 83 chr11 39734801 39734933 -111048620 + (TATAA)n Simple_repeat Simple_repeat 4 125 0 230 272 99 12 chr11 39736068 39736149 -111047404 - L2 LINE L2 0 3313 3226 370 318 47 7 chr11 39736561 39736709 -111046844 + MIR SINE MIR 70 223 -39 183 250 13 105 chr11 39738689 39738765 -111044788 - MER5A DNA MER1_type 0 189 121 239 326 130 11 chr11 39740373 39740557 -111042996 - L2 LINE L2 -9 3304 3099 326 321 74 19 chr11 39740839 39741054 -111042499 - L2 LINE L2 -557 2757 2531 1249 249 55 53 chr11 39741209 39741888 -111041665 - L1ME2 LINE L1 -47 6117 5409 625 279 31 25 chr11 39742004 39742326 -111041227 - L1ME2 LINE L1 -917 5229 4906 283 263 37 141 chr11 39742887 39743157 -111040396 - L2 LINE L2 -2770 544 303 222 229 42 104 chr11 39743201 39743297 -111040256 + MIR SINE MIR 94 183 -79 201 156 0 0 chr11 39743440 39743472 -111040081 + (TATG)n Simple_repeat Simple_repeat 4 35 0 478 108 12 48 chr11 39743995 39744078 -111039475 + MADE1 DNA Mariner 1 80 0 1610 221 40 80 chr11 39744245 39744571 -111038982 + MLT1D LTR MaLR 1 300 -205 2164 92 31 3 chr11 39744571 39744864 -111038689 + AluSc SINE Alu 8 308 -1 1610 221 40 80 chr11 39744864 39745063 -111038490 + MLT1D LTR MaLR 300 505 0 1340 209 72 17 chr11 39745363 39745708 -111037845 + MLT1A1 LTR MaLR 1 364 -1 681 188 113 75 chr11 39745713 39745926 -111037627 + MLT2B1 LTR ERVL 176 396 -124 1824 145 95 0 chr11 39746006 39746289 -111037264 + AluSg SINE Alu 1 310 0 272 215 15 0 chr11 39747386 39747451 -111036102 - MER2 DNA MER2_type -136 209 144 2688 79 6 0 chr11 39747612 39747965 -111035588 + THE1A LTR MaLR 1 355 0 1516 184 29 46 chr11 39748651 39748999 -111034554 + MER2 DNA MER2_type 2 343 -1 24 32 0 0 chr11 39749250 39749281 -111034272 + AT_rich Low_complexity Low_complexity 1 31 0 863 55 0 0 chr11 39749281 39749390 -111034163 - L1PA5 LINE L1 -16 6138 6030 865 213 0 48 chr11 39749411 39749599 -111033954 - MER58A DNA MER1_type -39 185 7 273 276 199 0 chr11 39750866 39750987 -111032566 - MIR3 SINE MIR -12 196 57 26 0 0 0 chr11 39751414 39751440 -111032113 + AT_rich Low_complexity Low_complexity 1 26 0 2341 92 0 0 chr11 39751750 39752044 -111031509 - AluY SINE Alu -3 308 15 236 287 58 35 chr11 39752368 39752455 -111031098 + L2 LINE L2 3225 3313 0 836 177 11 19 chr11 39752549 39752735 -111030818 - L1MA1 LINE L1 -464 5838 5657 7729 20 2 0 chr11 39752736 39753905 -111029648 - L1PA2 LINE L1 0 6155 4986 7091 24 0 1 chr11 39753905 39754742 -111028811 + L1PA2 LINE L1 4148 4983 -1163 2285 195 4 39 chr11 39754752 39755290 -111028263 + L1MA10 LINE L1 5815 6333 -1 280 294 228 0 chr11 39755460 39755640 -111027913 + MLT1K LTR MaLR 366 586 -2 24 32 0 0 chr11 39755870 39755901 -111027652 + AT_rich Low_complexity Low_complexity 1 31 0 459 133 51 0 chr11 39757719 39757817 -111025736 + GA-rich Low_complexity Low_complexity 3 105 0 360 0 0 0 chr11 39757834 39757874 -111025679 + (CAGGG)n Simple_repeat Simple_repeat 2 41 0 532 259 62 48 chr11 39758421 39758730 -111024823 + L1MC4a LINE L1 5655 5967 -1841 220 222 86 0 chr11 39758748 39758829 -111024724 + (TAAAG)n Simple_repeat Simple_repeat 5 92 0 322 274 57 16 chr11 39759152 39759276 -111024277 + L1MC5 LINE L1 7805 7933 -28 765 240 20 5 chr11 39759636 39759840 -111023713 - MER3 DNA MER1_type -1 208 2 218 0 61 0 chr11 39759924 39759957 -111023596 + (TTTTG)n Simple_repeat Simple_repeat 1 180 0 2014 107 7 4 chr11 39759957 39760238 -111023315 - AluSq SINE Alu -31 282 1 225 236 14 14 chr11 39760839 39760911 -111022642 + (TA)n Simple_repeat Simple_repeat 2 73 0 243 0 0 0 chr11 39760911 39760938 -111022615 + (CA)n Simple_repeat Simple_repeat 2 28 0 1432 308 65 25 chr11 39760944 39761453 -111022100 + MLT1E2 LTR MaLR 89 617 -9 235 297 110 8 chr11 39762029 39762147 -111021406 - MIR SINE MIR -2 260 131 260 316 58 4 chr11 39763270 39763381 -111020172 - MIR SINE MIR -89 119 2 263 322 167 23 chr11 39763927 39764101 -111019452 + MIR SINE MIR 56 254 -8 644 348 16 4 chr11 39764999 39765249 -111018304 + MIR SINE MIR 7 259 -3 275 273 13 0 chr11 39765470 39765547 -111018006 + MER117 DNA MER1_type 71 148 -49 4794 154 43 19 chr11 39765925 39766809 -111016744 + MER4D LTR ERV1 1 664 0 1348 239 73 23 chr11 39766838 39767274 -111016279 - LTR38 LTR ERV1 -12 544 87 21 0 0 0 chr11 39767302 39767323 -111016230 + AT_rich Low_complexity Low_complexity 1 21 0 595 115 0 0 chr11 39767622 39767709 -111015844 + MER39 LTR ERV1 1 87 -620 305 259 96 7 chr11 39767712 39767847 -111015706 + L1MA5A LINE L1 6147 6293 -4 630 0 47 0 chr11 39768265 39768350 -111015203 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 200 332 141 48 chr11 39769114 39769512 -111014041 + L2 LINE L2 1224 1658 -1656 246 296 14 0 chr11 39769585 39769656 -111013897 - MIR SINE MIR -93 169 98 2416 134 3 6 chr11 39770416 39770781 -111012772 - THE1B LTR MaLR 0 364 1 1194 292 76 54 chr11 39771025 39771601 -111011952 + MLT1G LTR MaLR 7 590 0 23 33 0 0 chr11 39772814 39772844 -111010709 + AT_rich Low_complexity Low_complexity 1 30 0 31 44 0 0 chr11 39772901 39772946 -111010607 + AT_rich Low_complexity Low_complexity 1 45 0 306 278 197 50 chr11 39773057 39773316 -111010237 + L2 LINE L2 1827 2123 -1191 183 80 0 0 chr11 39773324 39773349 -111010204 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 679 325 85 10 chr11 39773511 39773806 -111009747 + L2 LINE L2 2640 2956 -358 26 30 0 0 chr11 39774258 39774291 -111009262 + AT_rich Low_complexity Low_complexity 1 33 0 559 297 108 9 chr11 39774658 39774870 -111008683 - MIR SINE MIR -1 261 29 23 0 0 0 chr11 39775578 39775601 -111007952 + AT_rich Low_complexity Low_complexity 1 23 0 279 0 0 0 chr11 39775910 39775945 -111007608 + (CA)n Simple_repeat Simple_repeat 1 66 0 279 0 0 0 chr11 39775945 39775976 -111007577 + (CA)n Simple_repeat Simple_repeat 2 32 0 2560 64 0 0 chr11 39776095 39776406 -111007147 + AluY SINE Alu 1 311 0 239 354 30 0 chr11 39776524 39776623 -111006930 + L1ME LINE L1 12 113 -5957 279 0 0 0 chr11 39776652 39776683 -111006870 + (TTA)n Simple_repeat Simple_repeat 3 33 0 4269 34 2 0 chr11 39776683 39777191 -111006362 - L1PA3 LINE L1 -18 6137 5629 8294 168 20 22 chr11 39777393 39779292 -111004261 - L1MA6 LINE L1 -697 5603 3706 3871 154 12 6 chr11 39779293 39779976 -111003577 + L1MA6 LINE L1 5614 6300 0 303 286 62 75 chr11 39780101 39780651 -111002902 - L1MEd LINE L1 -4931 1188 646 1026 216 147 63 chr11 39782911 39783230 -111000323 + L1M2c LINE L1 7 352 -6437 416 279 7 3 chr11 39783236 39783375 -111000178 + MER5A DNA MER1_type 6 187 -2 884 295 105 8 chr11 39783564 39783964 -110999589 - L1ME3 LINE L1 -67 6375 5937 696 246 36 0 chr11 39783981 39784148 -110999405 - LTR16C LTR ERVL 0 491 319 717 280 46 39 chr11 39784434 39784741 -110998812 - L1ME3 LINE L1 -512 5930 5622 267 299 33 56 chr11 39784739 39784843 -110998710 - L1ME3 LINE L1 -1091 5335 5237 * 1755 162 32 0 chr11 39784843 39785127 -110998426 + AluSx SINE Alu 1 293 -19 267 299 33 56 chr11 39785127 39785236 -110998317 - L1ME3 LINE L1 -1189 5237 5127 229 308 70 19 chr11 39785287 39785443 -110998110 - L1ME3 LINE L1 -5021 1405 1242 514 276 16 0 chr11 39785703 39785826 -110997727 + FLAM_A SINE Alu 1 125 -8 1719 128 81 36 chr11 39785830 39786189 -110997364 - THE1C LTR MaLR 0 375 1 4642 189 14 12 chr11 39786284 39787338 -110996215 + L1MB2 LINE L1 5112 6169 -2 1503 286 27 33 chr11 39787364 39787847 -110995706 - MLT1F LTR MaLR -62 480 1 26 30 0 0 chr11 39788702 39788735 -110994818 + AT_rich Low_complexity Low_complexity 1 33 0 28 48 0 0 chr11 39788749 39788791 -110994762 + AT_rich Low_complexity Low_complexity 1 42 0 237 299 52 10 chr11 39788791 39788888 -110994665 - MIR SINE MIR -14 248 148 357 331 32 0 chr11 39789120 39789274 -110994279 - MLT1J1 LTR MaLR -227 219 61 271 214 57 0 chr11 39789311 39789381 -110994172 + MLT1J LTR MaLR 1 74 -437 409 155 52 21 chr11 39789384 39789481 -110994072 - MER50 LTR ERV1 -130 604 505 463 237 10 0 chr11 39789523 39789620 -110993933 + MLT1J LTR MaLR 70 167 -344 643 275 77 10 chr11 39789717 39789924 -110993629 + MLT1J LTR MaLR 291 511 0 482 323 72 24 chr11 39790826 39790993 -110992560 + MIR3 SINE MIR 17 191 -17 38 75 0 0 chr11 39791270 39791350 -110992203 + AT_rich Low_complexity Low_complexity 1 80 0 497 198 17 35 chr11 39792054 39792170 -110991383 + MER20 DNA MER1_type 104 217 -2 26 30 0 0 chr11 39792183 39792216 -110991337 + AT_rich Low_complexity Low_complexity 1 33 0 234 0 0 0 chr11 39792629 39792655 -110990898 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 1988 91 7 4 chr11 39792655 39792930 -110990623 - AluY SINE Alu -33 278 3 1043 244 4 15 chr11 39792947 39793209 -110990344 - L1MB8 LINE L1 -41 6137 5879 2447 171 45 6 chr11 39843346 39843860 -110939693 + L1MA9 LINE L1 5776 6309 -3 24 53 0 0 chr11 39843892 39843930 -110939623 + AT_rich Low_complexity Low_complexity 1 38 0 804 235 11 11 chr11 39844064 39844251 -110939302 - MER2 DNA MER2_type -1 344 158 2852 187 80 87 chr11 39844252 39844380 -110939173 + MER21A LTR ERV1 3 130 -801 5661 34 0 0 chr11 39844380 39845055 -110938498 - L1PA4 LINE L1 -6 6149 5475 2951 37 0 0 chr11 39845055 39845431 -110938122 - L1PA3 LINE L1 0 6155 5794 2852 187 80 87 chr11 39845431 39846236 -110937317 + MER21A LTR ERV1 128 931 0 775 184 95 0 chr11 39846236 39846382 -110937171 - MER2 DNA MER2_type -182 163 4 22 35 0 0 chr11 39846411 39846440 -110937113 + AT_rich Low_complexity Low_complexity 1 29 0 28 48 0 0 chr11 39846820 39846862 -110936691 + AT_rich Low_complexity Low_complexity 1 42 0 333 185 0 0 chr11 39847018 39847083 -110936470 + GA-rich Low_complexity Low_complexity 3 67 0 33 25 0 0 chr11 39847130 39847170 -110936383 + AT_rich Low_complexity Low_complexity 1 40 0 25 65 0 0 chr11 39847196 39847242 -110936311 + AT_rich Low_complexity Low_complexity 1 46 0 332 189 71 18 chr11 39847243 39847412 -110936141 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 33 66 0 0 chr11 39847425 39847486 -110936067 + AT_rich Low_complexity Low_complexity 1 61 0 431 185 144 30 chr11 39848132 39848292 -110935261 - MIR SINE MIR -26 236 55 2341 191 63 15 chr11 39848391 39848853 -110934700 + LTR42 LTR ERVL 1 484 -11 272 204 19 0 chr11 39850540 39850594 -110932959 + L1ME4a LINE L1 5855 5909 -212 1016 267 209 25 chr11 39850594 39851039 -110932514 + MLT1G LTR MaLR 1 527 -63 375 244 78 22 chr11 39851054 39851234 -110932319 - MER63 DNA MER1_type -2 1058 869 347 89 18 0 chr11 39851314 39851370 -110932183 + (TA)n Simple_repeat Simple_repeat 1 57 0 1775 112 56 7 chr11 39852221 39852533 -110931020 + AluSx SINE Alu 3 327 0 38 51 0 0 chr11 39852694 39852753 -110930800 + AT_rich Low_complexity Low_complexity 1 59 0 22 25 0 25 chr11 39852872 39852891 -110930662 + AT_rich Low_complexity Low_complexity 1 19 -20 2045 134 0 0 chr11 39852891 39853175 -110930378 + AluSc SINE Alu 1 284 -25 22 25 0 25 chr11 39853175 39853195 -110930358 + AT_rich Low_complexity Low_complexity 19 39 0 4681 151 6 32 chr11 39853679 39854519 -110929034 - L1MC1 LINE L1 -2 6331 5514 216 170 0 0 chr11 39854596 39854649 -110928904 + A-rich Low_complexity Low_complexity 1 53 0 381 314 94 11 chr11 39854705 39854896 -110928657 + L1MEc LINE L1 540 746 -5650 1284 116 63 0 chr11 39854898 39855087 -110928466 + AluSp SINE Alu 2 202 -111 3679 148 53 26 chr11 39855136 39856228 -110927325 - MER11A LTR ERVK 0 1236 1 464 264 78 48 chr11 39856228 39856599 -110926954 + L1MEc LINE L1 853 1234 -5162 52 17 0 0 chr11 39856660 39856719 -110926834 + AT_rich Low_complexity Low_complexity 1 59 0 2001 142 0 7 chr11 39856829 39857131 -110926422 + AluSq SINE Alu 1 300 -13 3642 279 51 31 chr11 39857199 39858958 -110924595 + L1MEc LINE L1 2383 4176 -2039 1671 272 60 7 chr11 39859191 39859920 -110923633 - L1MCb LINE L1 -2906 3658 2891 1310 251 39 31 chr11 39859945 39860430 -110923123 - L1M4 LINE L1 -897 5747 5259 2310 267 57 37 chr11 39860459 39861565 -110921988 - L1M4 LINE L1 -2191 4453 3326 1776 164 146 11 chr11 39861565 39861942 -110921611 - MSTA LTR MaLR 0 428 1 8798 164 7 35 chr11 39861942 39863565 -110919988 - MSTA-int LTR MaLR 0 1580 3 1949 160 128 8 chr11 39863567 39863949 -110919604 - MSTA LTR MaLR 0 428 1 1238 274 82 59 chr11 39863965 39864099 -110919454 - L1M4 LINE L1 -5572 970 841 207 0 0 0 chr11 39864099 39864122 -110919431 + (CAAAC)n Simple_repeat Simple_repeat 1 23 0 1238 274 82 59 chr11 39864122 39864582 -110918971 - L1M4 LINE L1 -5701 841 362 300 291 60 26 chr11 39864584 39864701 -110918852 - L1M4 LINE L1 -6269 273 153 2057 227 85 68 chr11 39864778 39865783 -110917770 - L1MCb LINE L1 -4761 1803 757 2691 270 67 22 chr11 39865796 39866260 -110917293 - L1MCb LINE L1 -5012 1033 591 3774 150 4 64 chr11 39866260 39866995 -110916558 - LTR8 LTR ERV1 0 691 1 2691 270 67 22 chr11 39866995 39867485 -110916068 - L1MCb LINE L1 -5454 591 36 355 339 77 46 chr11 39867596 39867753 -110915800 + L1ME2 LINE L1 2692 2843 -3303 2235 95 7 3 chr11 39867753 39868059 -110915494 - AluSq SINE Alu -6 307 1 355 339 77 46 chr11 39868059 39868252 -110915301 + L1ME2 LINE L1 2843 3053 -3093 229 261 17 35 chr11 39868347 39868462 -110915091 + L1ME2 LINE L1 5275 5387 -2421 28 71 0 0 chr11 39869567 39869623 -110913930 + AT_rich Low_complexity Low_complexity 1 56 0 367 333 51 1 chr11 39869848 39869997 -110913556 - MIR SINE MIR -68 140 39 28 0 0 0 chr11 39870528 39870556 -110912997 + AT_rich Low_complexity Low_complexity 1 28 0 7389 25 1 0 chr11 39870670 39872131 -110911422 - L1PA3 LINE L1 -46 6109 4648 401 328 41 31 chr11 39872124 39872319 -110911234 + L1MEc LINE L1 116 312 -6084 * 562 282 54 37 chr11 39872405 39872773 -110910780 + L1ME2 LINE L1 5657 6027 -137 271 299 39 19 chr11 39872779 39872933 -110910620 + L1MA10 LINE L1 6174 6330 -4 1035 191 164 43 chr11 39873030 39873354 -110910199 + MLT1A1 LTR MaLR 1 363 -2 22 0 0 0 chr11 39874186 39874208 -110909345 + AT_rich Low_complexity Low_complexity 1 22 0 319 321 36 29 chr11 39874358 39874498 -110909055 + MIR SINE MIR 48 188 -74 293 283 215 34 chr11 39874633 39874810 -110908743 + L2 LINE L2 2827 3035 -278 1403 214 38 13 chr11 39875641 39875954 -110907599 + MER58B DNA MER1_type 3 323 -18 812 169 46 72 chr11 39876329 39876524 -110907029 + MLT1A1 LTR MaLR 2 191 -174 826 251 1 11 chr11 39877954 39878163 -110905390 - MLT1A2 LTR MaLR 0 386 184 1845 137 52 27 chr11 39878255 39878584 -110904969 - THE1B LTR MaLR -25 339 3 266 77 0 0 chr11 39878585 39878624 -110904929 - THE1B-int LTR MaLR 0 1580 1542 * 8798 115 7 1 chr11 39878607 39879843 -110903710 - THE1B-int LTR MaLR -336 1244 1 2169 127 48 22 chr11 39879843 39880198 -110903355 - THE1B LTR MaLR 0 364 1 553 143 10 41 chr11 39880325 39880423 -110903130 - MLT1A2 LTR MaLR -276 98 4 802 221 15 56 chr11 39880483 39880678 -110902875 + MER58A DNA MER1_type 38 224 0 757 228 5 46 chr11 39880737 39880934 -110902619 - MER5A DNA MER1_type 0 189 1 385 307 65 7 chr11 39881244 39881397 -110902156 - MIR SINE MIR -95 167 6 208 263 20 101 chr11 39881691 39881790 -110901763 + L3 LINE CR1 572 662 -915 345 364 15 39 chr11 39881836 39882042 -110901511 - MIR SINE MIR -42 220 20 252 122 0 0 chr11 39882834 39882875 -110900678 + (TG)n Simple_repeat Simple_repeat 2 42 0 835 287 21 4 chr11 39883427 39883664 -110899889 - MIR SINE MIR -10 252 12 491 278 31 6 chr11 39883947 39884109 -110899444 - Charlie8 DNA MER1_type -1954 463 298 189 0 0 0 chr11 39884657 39884678 -110898875 + (TA)n Simple_repeat Simple_repeat 2 22 0 272 336 187 8 chr11 39884695 39884829 -110898724 - MLT1I LTR MaLR -66 343 186 22 0 0 0 chr11 39886718 39886740 -110896813 + AT_rich Low_complexity Low_complexity 1 22 0 204 175 25 0 chr11 39886919 39886959 -110896594 + (TA)n Simple_repeat Simple_repeat 1 41 0 296 316 37 0 chr11 39887174 39887310 -110896243 + L1MC4 LINE L1 6870 7010 -1032 200 333 52 31 chr11 39887841 39887937 -110895616 - MIR SINE MIR -142 120 23 491 45 0 15 chr11 39888886 39888953 -110894600 + (TTCC)n Simple_repeat Simple_repeat 2 67 0 1791 161 7 3 chr11 39888953 39889258 -110894295 - AluSg SINE Alu -2 308 3 217 205 0 0 chr11 39889355 39889394 -110894159 + (TG)n Simple_repeat Simple_repeat 2 40 0 853 243 11 107 chr11 39889783 39890063 -110893490 - MER21B LTR ERV1 -610 253 1 555 327 67 0 chr11 39891430 39891638 -110891915 + MIR SINE MIR 39 260 -2 633 303 60 23 chr11 39891662 39891880 -110891673 - MIR SINE MIR -27 235 10 11743 206 22 39 chr11 39893967 39897845 -110885708 + L1PA16 LINE L1 1197 5137 -1732 243 0 0 0 chr11 39897845 39897872 -110885681 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1778 61 0 0 chr11 39897872 39898101 -110885452 - L1PA8 LINE L1 -11 6161 5933 11743 206 22 39 chr11 39898101 39898987 -110884566 + L1PA16 LINE L1 5136 6035 -834 2175 60 3 50 chr11 39898987 39899287 -110884266 + AluY SINE Alu 5 290 -21 11743 206 22 39 chr11 39899287 39900108 -110883445 + L1PA16 LINE L1 6035 6682 -187 1934 120 3 7 chr11 39900108 39900391 -110883162 + AluSx SINE Alu 1 282 -30 11743 206 22 39 chr11 39900391 39900576 -110882977 + L1PA16 LINE L1 6682 6869 0 30 0 0 0 chr11 39903202 39903232 -110880321 + AT_rich Low_complexity Low_complexity 1 30 0 27 62 0 0 chr11 39903398 39903446 -110880107 + AT_rich Low_complexity Low_complexity 1 48 0 344 259 19 37 chr11 39903612 39903720 -110879833 - L2 LINE L2 0 3313 3208 609 308 72 42 chr11 39903860 39903950 -110879603 - LTR40a LTR ERVL -2 517 431 1641 121 114 11 chr11 39903950 39904230 -110879323 + AluSg1 SINE Alu 1 309 0 609 308 72 42 chr11 39904230 39904525 -110879028 - LTR40a LTR ERVL -88 431 120 408 286 101 48 chr11 39904549 39904738 -110878815 - LTR40a LTR ERVL -320 199 1 204 97 0 0 chr11 39905570 39905601 -110877952 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 203 276 0 0 chr11 39905910 39905968 -110877585 + (TA)n Simple_repeat Simple_repeat 2 59 0 204 97 0 0 chr11 39905982 39906013 -110877540 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 432 0 0 0 chr11 39906012 39906060 -110877493 + (TA)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr11 39907142 39907164 -110876389 + AT_rich Low_complexity Low_complexity 1 22 0 444 325 76 19 chr11 39907812 39907969 -110875584 - MIR3 SINE MIR -10 198 33 27 87 0 0 chr11 39908795 39908864 -110874689 + AT_rich Low_complexity Low_complexity 1 69 0 23 0 0 0 chr11 39909040 39909063 -110874490 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr11 39910084 39910108 -110873445 + AT_rich Low_complexity Low_complexity 1 24 0 1379 132 36 0 chr11 39910115 39910365 -110873188 - L1MA7 LINE L1 -5 6286 6028 251 200 133 92 chr11 39910485 39910605 -110872948 - L2 LINE L2 0 3313 3189 246 327 45 9 chr11 39910691 39910801 -110872752 + MIR SINE MIR 47 160 -102 22 70 0 0 chr11 39912406 39912449 -110871104 + AT_rich Low_complexity Low_complexity 1 43 0 315 373 46 0 chr11 39912506 39912659 -110870894 - MIR SINE MIR -49 213 54 284 317 48 3 chr11 39913251 39913415 -110870138 + MIR SINE MIR 13 228 -34 484 42 28 0 chr11 39914543 39914614 -110868939 + (TC)n Simple_repeat Simple_repeat 2 74 0 396 0 0 0 chr11 39914705 39914749 -110868804 + (TA)n Simple_repeat Simple_repeat 1 44 0 236 279 51 13 chr11 39914812 39914891 -110868662 + MLT1J1 LTR MaLR 80 161 -285 675 279 89 42 chr11 39916260 39916640 -110866913 + L1ME3A LINE L1 5725 6122 -48 23 0 0 0 chr11 39917111 39917134 -110866419 + AT_rich Low_complexity Low_complexity 1 23 0 396 259 6 51 chr11 39917513 39917671 -110865882 + L1MB7 LINE L1 581 731 -5549 2191 266 39 52 chr11 39917678 39918556 -110864997 + L1MB7 LINE L1 1059 1947 -4435 1407 219 0 24 chr11 39918556 39918875 -110864678 + AluJb SINE Alu 2 313 0 2191 266 39 52 chr11 39918875 39919930 -110863623 + L1MB7 LINE L1 1947 3043 -3339 1653 254 30 10 chr11 39920006 39920636 -110862917 + L1MB7 LINE L1 5158 5803 -743 1506 222 39 10 chr11 39920637 39921043 -110862510 + L1MB7 LINE L1 6003 6420 0 1949 161 3 0 chr11 39923490 39923800 -110859753 - AluSx SINE Alu -1 311 1 273 298 62 67 chr11 39924479 39924657 -110858896 - L2 LINE L2 -2474 840 664 1627 282 77 39 chr11 39924703 39925274 -110858279 + MLT1E LTR MaLR 1 593 0 198 71 0 0 chr11 39925527 39925555 -110857998 + (CAT)n Simple_repeat Simple_repeat 3 30 0 207 189 0 0 chr11 39925595 39925632 -110857921 + MIR SINE MIR 190 226 -36 1892 239 69 31 chr11 39928126 39928604 -110854949 + MLT1D LTR MaLR 10 505 0 22 70 0 0 chr11 39928829 39928872 -110854681 + AT_rich Low_complexity Low_complexity 1 43 0 293 309 186 21 chr11 39929129 39929317 -110854236 + MIR SINE MIR 12 230 -32 23 86 0 0 chr11 39929770 39929828 -110853725 + AT_rich Low_complexity Low_complexity 1 58 0 1780 115 0 0 chr11 39930005 39930239 -110853314 + AluSc SINE Alu 1 234 -75 2207 149 25 3 chr11 39930422 39930778 -110852775 + THE1B LTR MaLR 1 364 0 2160 140 21 9 chr11 39930990 39931449 -110852104 + L1M1 LINE L1 5152 5616 -687 1851 134 75 10 chr11 39931450 39931824 -110851729 - LTR7 LTR ERV1 0 450 1 3125 129 35 0 chr11 39931824 39932334 -110851219 - HERVH LTR ERV1 0 7713 7186 4980 158 6 4 chr11 39932444 39933401 -110850152 - HERVH LTR ERV1 -1805 5286 3873 1048 179 15 0 chr11 39933401 39933597 -110849956 - HERVH LTR ERV1 -4375 3338 3140 * 4324 139 2 21 chr11 39933576 39934788 -110848765 - HERVH LTR ERV1 -4718 2995 1711 2719 145 43 8 chr11 39934783 39935613 -110847940 - HERVH LTR ERV1 -6558 1155 1 * 1807 137 19 7 chr11 39935613 39935925 -110847628 - LTR7 LTR ERV1 0 450 85 3318 138 81 5 chr11 39935926 39936566 -110846987 + L1MA4A LINE L1 5613 6301 -2 180 135 0 0 chr11 39936642 39936679 -110846874 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1997 124 0 13 chr11 39936775 39937074 -110846479 + AluSc SINE Alu 3 297 -12 1387 244 23 47 chr11 39937446 39937918 -110845635 + MLT1C LTR MaLR 7 467 0 291 162 0 95 chr11 39938243 39938317 -110845236 + MSTC LTR MaLR 1 67 -361 1326 178 232 11 chr11 39938329 39938678 -110844875 + MSTB LTR MaLR 1 426 0 8950 144 7 42 chr11 39938680 39940314 -110843239 + MSTA-int LTR MaLR 3 1580 0 1504 182 190 0 chr11 39940314 39940671 -110842882 + MSTA LTR MaLR 3 428 0 239 210 12 123 chr11 39941628 39941709 -110841844 - Tigger5 DNA MER2_type -1 2322 2251 620 271 105 48 chr11 39942277 39942649 -110840904 - L2 LINE L2 -5 3308 2916 309 346 11 43 chr11 39942704 39942889 -110840664 + MER5A DNA MER1_type 11 189 0 1258 296 74 40 chr11 39943983 39944554 -110838999 + MLT1E LTR MaLR 4 593 0 187 356 49 91 chr11 39944954 39945339 -110838214 + L2 LINE L2 2903 3271 -1 281 269 0 15 chr11 39945400 39945467 -110838086 + MIR SINE MIR 81 146 -116 799 315 52 29 chr11 39945514 39945860 -110837693 - L2 LINE L2 -9 3304 2951 22 35 0 0 chr11 39946310 39946339 -110837214 + AT_rich Low_complexity Low_complexity 1 29 0 4277 182 50 12 chr11 39947709 39948841 -110834712 - L1MA6 LINE L1 -3 7716 6496 7986 206 27 10 chr11 39949112 39950958 -110832595 - L1MA6 LINE L1 -1053 6512 4636 967 206 79 82 chr11 39951048 39951623 -110831930 - L1MA6 LINE L1 -3664 3901 3313 231 339 59 47 chr11 39951962 39952198 -110831355 - MIR SINE MIR -18 244 6 220 359 99 8 chr11 39952488 39952619 -110830934 - L2 LINE L2 -4 3309 3167 22 35 0 0 chr11 39952641 39952670 -110830883 + AT_rich Low_complexity Low_complexity 1 29 0 1382 164 89 89 chr11 39954021 39954423 -110829130 + MSTB1 LTR MaLR 39 432 0 390 247 44 70 chr11 39954452 39954679 -110828874 - L1ME1 LINE L1 -201 6034 5814 1982 191 16 3 chr11 39954681 39955053 -110828500 - MLT1B LTR MaLR 0 390 14 947 242 22 9 chr11 39955115 39955338 -110828215 - L1ME1 LINE L1 -460 5773 5548 246 32 0 0 chr11 39955352 39955383 -110828170 + (TG)n Simple_repeat Simple_repeat 1 31 0 201 74 0 0 chr11 39955383 39955410 -110828143 + (GA)n Simple_repeat Simple_repeat 2 28 0 1414 201 75 3 chr11 39955459 39955753 -110827800 + MER7A DNA MER2_type 8 320 -26 1065 130 5 0 chr11 39955894 39956079 -110827474 - L1MA6 LINE L1 0 6300 6115 4076 167 21 49 chr11 39956182 39957410 -110826143 - L1MA6 LINE L1 -205 6095 4907 3324 157 22 18 chr11 39957483 39958150 -110825403 - L1MC1 LINE L1 0 6333 5664 1410 253 46 34 chr11 39958164 39958725 -110824828 - L1ME1 LINE L1 -841 5374 4807 660 160 37 9 chr11 39958924 39959101 -110824452 - L1P1 LINE L1 -678 5477 5295 955 261 138 35 chr11 39959140 39959949 -110823604 - L1ME1 LINE L1 -3875 2521 1629 3571 223 37 22 chr11 39959972 39960549 -110823004 - L1MB3 LINE L1 -9 6174 5584 4947 24 3 0 chr11 39960549 39961129 -110822424 + L1PA4 LINE L1 5574 6155 0 3571 223 37 22 chr11 39961129 39961604 -110821949 - L1MB3 LINE L1 -599 5584 5118 255 297 31 8 chr11 39961598 39961744 -110821809 - L1MDa LINE L1 -4614 2951 2774 * 751 168 0 0 chr11 39961827 39961952 -110821601 - AluJb SINE Alu -29 283 159 473 191 0 0 chr11 39961959 39962043 -110821510 - AluS SINE Alu -229 84 1 485 228 0 0 chr11 39963807 39963899 -110819654 - MER5A DNA MER1_type -89 100 9 3736 181 47 13 chr11 39964610 39965311 -110818242 - MER44D DNA MER2_type 0 605 9 21 36 0 0 chr11 39965352 39965380 -110818173 + AT_rich Low_complexity Low_complexity 1 28 0 381 351 56 48 chr11 39965584 39965651 -110817902 - MLT1D LTR MaLR 0 505 440 2591 3 0 0 chr11 39965651 39965933 -110817620 + AluYb8 SINE Alu 37 318 0 381 351 56 48 chr11 39965933 39966346 -110817207 - MLT1D LTR MaLR -65 440 21 1506 255 42 37 chr11 39966491 39966919 -110816634 - MLT1D LTR MaLR -74 431 2 752 344 25 19 chr11 39966921 39967281 -110816272 + MLT1K LTR MaLR 82 443 -145 27 62 0 0 chr11 39968625 39968673 -110814880 + AT_rich Low_complexity Low_complexity 1 48 0 219 355 56 52 chr11 39969675 39969906 -110813647 + MIR SINE MIR 1 232 -30 262 312 21 0 chr11 39969913 39970006 -110813547 + (TAG)n Simple_repeat Simple_repeat 2 96 0 280 43 43 0 chr11 39971034 39971080 -110812473 + (TC)n Simple_repeat Simple_repeat 1 48 0 268 368 14 35 chr11 39971516 39971804 -110811749 + ERVL LTR ERVL 5042 5323 -441 1053 329 17 41 chr11 39971997 39972307 -110811246 + LTR16A LTR ERVL 27 326 -124 2363 81 0 3 chr11 39972307 39972617 -110810936 - AluSc SINE Alu 0 309 1 1053 329 17 41 chr11 39972617 39972722 -110810831 + LTR16A LTR ERVL 326 432 -18 4508 175 14 49 chr11 39972923 39974170 -110809383 - L1MA8 LINE L1 -41 6250 5050 647 191 14 7 chr11 39974173 39974320 -110809233 + L1 LINE L1 5135 5282 -864 6592 30 0 0 chr11 39975145 39975940 -110807613 - L1P LINE L1 -3412 2734 1940 7457 31 1 0 chr11 39975940 39976910 -110806643 + L1PA3 LINE L1 5189 6159 0 22 35 0 0 chr11 39977072 39977101 -110806452 + AT_rich Low_complexity Low_complexity 1 29 0 365 94 0 50 chr11 39977106 39977183 -110806370 - MLT2B1 LTR ERVL 0 520 443 273 194 10 39 chr11 39977183 39977286 -110806267 + (CATATA)n Simple_repeat Simple_repeat 4 103 0 1428 224 126 11 chr11 39977323 39977703 -110805850 - MLT2B1 LTR ERVL -91 429 6 22 0 0 0 chr11 39978034 39978056 -110805497 + AT_rich Low_complexity Low_complexity 1 22 0 1469 250 30 41 chr11 39978063 39978571 -110804982 - MLT1D LTR MaLR -1 504 3 453 231 19 139 chr11 39978578 39978794 -110804759 - MLT1D-int LTR MaLR -6 1729 1237 196 354 14 95 chr11 39979722 39979869 -110803684 - L2 LINE L2 0 3272 3138 24 0 0 0 chr11 39979873 39979897 -110803656 + AT_rich Low_complexity Low_complexity 1 24 0 5069 200 13 29 chr11 39980571 39981213 -110802340 + L1ME4a LINE L1 19 640 -5786 180 0 0 0 chr11 39981213 39981233 -110802320 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 5069 200 13 29 chr11 39981233 39981640 -110801913 + L1ME4a LINE L1 640 1052 -5374 40 83 0 0 chr11 39981692 39981788 -110801765 + AT_rich Low_complexity Low_complexity 1 96 0 456 258 97 32 chr11 39981788 39981846 -110801707 + L1ME4a LINE L1 3839 3892 -2534 1142 129 129 105 chr11 39981846 39981883 -110801670 - THE1C LTR MaLR -2 373 338 1828 146 3 53 chr11 39981883 39982206 -110801347 + AluSx SINE Alu 1 307 -5 1142 129 129 105 chr11 39982206 39982531 -110801022 - THE1C LTR MaLR -37 338 2 456 258 97 32 chr11 39982531 39982720 -110800833 + L1ME4a LINE L1 3892 4102 -2324 323 227 0 0 chr11 39982768 39982834 -110800719 - L1ME4a LINE L1 -1254 5172 5107 262 287 61 33 chr11 39982843 39983024 -110800529 + L1ME4a LINE L1 5142 5327 -1099 258 248 8 48 chr11 39983266 39983333 -110800220 + L1 LINE L1 3176 3244 -2902 187 54 54 0 chr11 39983333 39983370 -110800183 + (TATAA)n Simple_repeat Simple_repeat 2 40 0 2306 158 31 14 chr11 39983377 39983796 -110799757 - MSTA LTR MaLR -2 426 1 258 248 8 48 chr11 39983796 39983845 -110799708 + L1 LINE L1 3250 3295 -2851 188 348 0 0 chr11 39983882 39983928 -110799625 + MIR SINE MIR 37 82 -180 303 247 45 45 chr11 39983932 39984021 -110799532 + MIR SINE MIR 57 145 -117 571 331 47 44 chr11 39984025 39984390 -110799163 - L2 LINE L2 -5 3308 2943 246 268 161 18 chr11 39984524 39984636 -110798917 - MIR SINE MIR -111 151 24 2482 115 8 16 chr11 39984817 39985191 -110798362 + THE1C LTR MaLR 5 375 0 191 204 20 0 chr11 39985216 39985265 -110798288 + (TA)n Simple_repeat Simple_repeat 1 50 0 2089 121 0 3 chr11 39985364 39985654 -110797899 - AluSq SINE Alu -14 299 11 291 248 10 30 chr11 39985903 39986004 -110797549 + (CATA)n Simple_repeat Simple_repeat 4 102 0 27 81 0 0 chr11 39986011 39986073 -110797480 + AT_rich Low_complexity Low_complexity 1 62 0 305 62 21 0 chr11 39986888 39986936 -110796617 + (TC)n Simple_repeat Simple_repeat 2 50 0 603 275 7 0 chr11 39986938 39987080 -110796473 - FRAM SINE Alu -33 143 1 27 49 0 0 chr11 39987160 39987201 -110796352 + AT_rich Low_complexity Low_complexity 1 41 0 453 257 56 32 chr11 39987203 39987487 -110796066 - L1M4 LINE L1 -758 5388 5098 418 380 24 5 chr11 39987519 39987929 -110795624 + L1ME4a LINE L1 5681 6098 -344 23 33 0 0 chr11 39988241 39988271 -110795282 + AT_rich Low_complexity Low_complexity 1 30 0 216 67 0 0 chr11 39988638 39988668 -110794885 + (GA)n Simple_repeat Simple_repeat 1 30 0 214 244 0 0 chr11 39988685 39988730 -110794823 + GA-rich Low_complexity Low_complexity 1 45 0 381 43 0 0 chr11 39989008 39989055 -110794498 + (TA)n Simple_repeat Simple_repeat 2 48 0 309 314 58 29 chr11 39989068 39989205 -110794348 + L1ME4a LINE L1 6255 6395 -6 29 28 0 0 chr11 39989979 39990015 -110793538 + AT_rich Low_complexity Low_complexity 1 36 0 256 111 0 0 chr11 39990168 39990213 -110793340 + MER4-int LTR ERV1 1112 1156 -5442 216 0 0 0 chr11 39990215 39990239 -110793314 + (GA)n Simple_repeat Simple_repeat 1 24 0 1367 215 59 99 chr11 39991129 39991655 -110791898 - MLT1D LTR MaLR 0 505 1 503 332 62 16 chr11 39991771 39992015 -110791538 + MIR SINE MIR 7 261 -1 251 177 16 0 chr11 39992246 39992308 -110791245 + A-rich Low_complexity Low_complexity 5 67 0 1694 210 14 78 chr11 39992387 39992825 -110790728 - MSTB LTR MaLR -16 410 1 261 0 0 0 chr11 39992835 39992864 -110790689 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 243 311 34 8 chr11 39992903 39993022 -110790531 + MLT1H LTR MaLR 46 167 -382 304 58 19 19 chr11 39993153 39993205 -110790348 + (TA)n Simple_repeat Simple_repeat 2 53 0 3089 171 47 15 chr11 39993955 39994746 -110788807 + L1MA8 LINE L1 4668 5481 -762 985 153 0 55 chr11 39994755 39994938 -110788615 + AluSg/x SINE Alu 138 310 -2 3624 164 20 72 chr11 39994939 39995787 -110787766 + L1MA8 LINE L1 5484 6287 -4 237 227 0 15 chr11 39996166 39996232 -110787321 + (ATG)n Simple_repeat Simple_repeat 2 66 0 195 284 11 53 chr11 39996235 39996330 -110787223 - MIR SINE MIR 0 262 172 360 311 0 0 chr11 39996357 39996460 -110787093 - MIR SINE MIR -7 255 153 431 179 9 0 chr11 39996504 39996610 -110786943 + (TA)n Simple_repeat Simple_repeat 1 107 0 2345 228 62 41 chr11 39996729 39997737 -110785816 + L1 LINE L1 29 1168 -4160 689 246 30 62 chr11 39997737 39998025 -110785528 + LTR1 LTR ERV1 1 425 -563 4334 209 31 32 chr11 39998053 39999383 -110784170 - L1 LINE L1 -3831 3734 2404 1262 187 121 91 chr11 39999385 39999870 -110783683 - LTR1B LTR ERV1 0 1020 344 11578 211 25 21 chr11 39999876 40002824 -110780729 + L1 LINE L1 2500 5460 -868 1453 96 5 5 chr11 40002824 40003032 -110780521 + L1PA7 LINE L1 5641 5848 -306 194 135 27 27 chr11 40003089 40003163 -110780390 + (TA)n Simple_repeat Simple_repeat 2 75 0 451 295 83 51 chr11 40003684 40003938 -110779615 + MIR SINE MIR 1 262 0 2564 48 3 0 chr11 40004571 40004880 -110778673 + AluY SINE Alu 2 311 0 258 277 93 54 chr11 40005028 40005360 -110778193 + L1M4 LINE L1 4509 4853 -1293 843 212 11 16 chr11 40005514 40005703 -110777850 + MER5A DNA MER1_type 1 188 -1 1305 233 52 40 chr11 40005825 40006228 -110777325 + MLT1C LTR MaLR 59 466 -1 596 264 6 25 chr11 40006273 40006432 -110777121 - MLT1J2 LTR MaLR -292 158 3 36 40 0 0 chr11 40008098 40008148 -110775405 + AT_rich Low_complexity Low_complexity 1 50 0 1859 164 10 0 chr11 40008263 40008562 -110774991 - AluSx SINE Alu -6 306 5 387 281 26 18 chr11 40008621 40008735 -110774818 + MLT1E LTR MaLR 7 121 -472 386 295 33 8 chr11 40008776 40008898 -110774655 + MLT1E LTR MaLR 119 243 -350 329 220 34 0 chr11 40008975 40009034 -110774519 + MLT1E1 LTR MaLR 280 340 -253 381 162 0 0 chr11 40009134 40009202 -110774351 + A-rich Low_complexity Low_complexity 1 68 0 520 135 250 7 chr11 40009217 40009357 -110774196 + MLT1E1 LTR MaLR 410 649 -5 457 296 37 25 chr11 40010042 40010204 -110773349 + Charlie1 DNA MER1_type 6 169 -2592 2636 118 47 7 chr11 40010238 40010663 -110772890 + L1PA15 LINE L1 5711 6152 -13 570 266 12 41 chr11 40010735 40010904 -110772649 + MER63A DNA MER1_type 47 210 0 356 197 15 0 chr11 40010930 40010996 -110772557 + Charlie1 DNA MER1_type 2693 2759 -2 1814 135 63 61 chr11 40011187 40011550 -110772003 + THE1B LTR MaLR 1 364 0 10820 116 11 1 chr11 40011550 40013115 -110770438 + THE1B-int LTR MaLR 1 1580 0 1750 104 61 29 chr11 40013115 40013394 -110770159 + THE1B LTR MaLR 1 288 -76 1562 196 44 22 chr11 40016361 40016728 -110766825 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr11 40017054 40017079 -110766474 + AT_rich Low_complexity Low_complexity 1 25 0 27 62 0 0 chr11 40017417 40017465 -110766088 + AT_rich Low_complexity Low_complexity 1 48 0 291 308 216 13 chr11 40018559 40018786 -110764767 + L2 LINE L2 2622 2894 -420 712 136 8 30 chr11 40018976 40019108 -110764445 - AluJb SINE Alu -26 286 158 1336 168 102 71 chr11 40019108 40019582 -110763971 + LTR1B LTR ERV1 291 783 -2 1921 167 39 64 chr11 40019628 40020065 -110763488 - MSTA LTR MaLR -2 426 1 339 347 16 0 chr11 40020264 40020385 -110763168 - MLT1I LTR MaLR -248 161 39 2132 112 0 3 chr11 40020550 40020844 -110762709 - AluSg SINE Alu -17 293 1 394 311 33 28 chr11 40021623 40021803 -110761750 - MIR SINE MIR -62 200 20 318 50 0 0 chr11 40021911 40021951 -110761602 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 86 0 0 chr11 40022228 40022286 -110761267 + AT_rich Low_complexity Low_complexity 1 58 0 279 0 0 0 chr11 40022317 40022348 -110761205 + (T)n Simple_repeat Simple_repeat 1 31 0 297 371 82 35 chr11 40022858 40023173 -110760380 + L2 LINE L2 2981 3310 -3 198 0 0 0 chr11 40023544 40023566 -110759987 + (T)n Simple_repeat Simple_repeat 1 22 0 411 356 88 25 chr11 40025234 40025596 -110757957 + L2 LINE L2 2130 2514 -800 2083 119 7 0 chr11 40026063 40026358 -110757195 - AluSx SINE Alu -15 297 1 225 304 0 9 chr11 40026366 40026448 -110757105 - MIR SINE MIR -45 163 84 388 336 31 54 chr11 40028110 40028333 -110755220 + MIR SINE MIR 36 253 -9 3257 152 11 4 chr11 40030139 40030667 -110752886 - Tigger3b DNA MER2_type -1 1230 699 2317 164 36 5 chr11 40030950 40031365 -110752188 + MSTA LTR MaLR 1 428 0 449 235 22 22 chr11 40031366 40031502 -110752051 - L1ME1 LINE L1 -224 5942 5807 491 289 12 67 chr11 40031535 40031788 -110751765 - L1ME1 LINE L1 -340 5826 5588 1105 117 6 6 chr11 40031942 40032113 -110751440 - Tigger3b DNA MER2_type -718 513 343 197 163 20 0 chr11 40032114 40032163 -110751390 + (TA)n Simple_repeat Simple_repeat 2 51 0 1842 167 22 9 chr11 40032167 40032491 -110751062 - Tigger3b DNA MER2_type -902 329 2 377 195 0 26 chr11 40032491 40032567 -110750986 + MER21B LTR ERV1 17 90 -773 236 304 38 13 chr11 40032589 40032668 -110750885 + MER21B LTR ERV1 19 99 -764 21 57 0 0 chr11 40034667 40034702 -110748851 + AT_rich Low_complexity Low_complexity 1 35 0 476 32 16 0 chr11 40034717 40034779 -110748774 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 410 271 23 8 chr11 40035550 40035683 -110747870 + L1MD2 LINE L1 6208 6342 -17 1532 205 65 8 chr11 40035695 40036065 -110747488 + L1MC3 LINE L1 6707 7097 -688 253 273 11 11 chr11 40036065 40036153 -110747400 + MLT1F1 LTR MaLR 35 122 -445 431 240 30 0 chr11 40036157 40036257 -110747296 + L1MC3 LINE L1 7189 7291 -494 1672 197 61 54 chr11 40036257 40036720 -110746833 - MER66A LTR ERV1 0 601 101 1867 226 43 4 chr11 40036806 40037276 -110746277 + L1MC3 LINE L1 7288 7775 -10 240 35 0 0 chr11 40037377 40037406 -110746147 + (CA)n Simple_repeat Simple_repeat 2 30 0 192 158 0 0 chr11 40037410 40037448 -110746105 + GA-rich Low_complexity Low_complexity 1 38 0 269 271 85 25 chr11 40037559 40037677 -110745876 + MIR SINE MIR 112 236 -26 1170 253 97 67 chr11 40037872 40038470 -110745083 + MLT1G LTR MaLR 1 581 -9 250 85 21 21 chr11 40038531 40038578 -110744975 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 31 0 0 0 chr11 40038735 40038766 -110744787 + AT_rich Low_complexity Low_complexity 1 31 0 480 18 0 0 chr11 40040362 40040419 -110743134 + (TG)n Simple_repeat Simple_repeat 2 58 0 182 36 0 36 chr11 40040521 40040549 -110743004 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 2479 183 41 18 chr11 40041931 40042728 -110740825 + L1MA9 LINE L1 4982 5785 -527 2166 164 79 33 chr11 40043594 40043964 -110739589 + L1MA9 LINE L1 5773 6172 -140 252 0 0 0 chr11 40043964 40043992 -110739561 + (CA)n Simple_repeat Simple_repeat 2 29 0 2166 164 79 33 chr11 40043992 40044103 -110739450 + L1MA9 LINE L1 6172 6276 -36 649 238 77 61 chr11 40044204 40044741 -110738812 - LTR48 LTR ERV1 0 787 3 378 322 154 0 chr11 40044835 40044978 -110738575 + MER5A DNA MER1_type 24 188 -1 306 0 0 0 chr11 40045051 40045085 -110738468 + (TTA)n Simple_repeat Simple_repeat 1 34 0 4701 72 14 0 chr11 40045086 40045712 -110737841 - L1PA7 LINE L1 -18 6136 5502 301 255 0 149 chr11 40045715 40045856 -110737697 - MIR SINE MIR -119 143 24 23 33 0 0 chr11 40046371 40046401 -110737152 + AT_rich Low_complexity Low_complexity 1 30 0 236 240 0 0 chr11 40048738 40048788 -110734765 - MIR SINE MIR -30 232 183 327 177 0 0 chr11 40048898 40048960 -110734593 + (CA)n Simple_repeat Simple_repeat 2 63 0 456 294 34 67 chr11 40049841 40050079 -110733474 - MIR SINE MIR -21 241 12 362 345 61 26 chr11 40050318 40050582 -110732971 - L1MC4 LINE L1 -43 7999 7727 2645 168 46 39 chr11 40050600 40051166 -110732387 - L1MB7 LINE L1 -23 6161 5592 395 248 62 55 chr11 40051175 40051449 -110732104 - L1MC5 LINE L1 -371 7590 7315 22 0 0 0 chr11 40052780 40052802 -110730751 + AT_rich Low_complexity Low_complexity 1 22 0 232 363 0 11 chr11 40053353 40053444 -110730109 - MIR3 SINE MIR -14 194 105 430 365 48 30 chr11 40053673 40054010 -110729543 + MLT1J LTR MaLR 45 387 -124 510 156 52 0 chr11 40054556 40054652 -110728901 - L1PA15 LINE L1 -4 6161 6061 296 164 0 0 chr11 40054861 40054916 -110728637 + L1MC/D LINE L1 5768 5822 -1986 231 188 0 0 chr11 40055950 40055998 -110727555 + (TAA)n Simple_repeat Simple_repeat 2 49 0 494 144 66 29 chr11 40056363 40056706 -110726847 + (TA)n Simple_repeat Simple_repeat 1 355 0 213 207 36 27 chr11 40056659 40056770 -110726783 + (TTATA)n Simple_repeat Simple_repeat 5 116 0 * 253 112 45 62 chr11 40056773 40056952 -110726601 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 46 45 0 0 chr11 40056968 40057035 -110726518 + AT_rich Low_complexity Low_complexity 1 67 0 198 211 30 6 chr11 40057045 40057211 -110726342 + (TATAA)n Simple_repeat Simple_repeat 2 171 0 180 146 76 23 chr11 40057172 40057343 -110726210 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 29 0 0 0 chr11 40057350 40057379 -110726174 + AT_rich Low_complexity Low_complexity 1 29 0 220 162 66 0 chr11 40057391 40057558 -110725995 + (TA)n Simple_repeat Simple_repeat 1 178 0 31 44 0 0 chr11 40057558 40057603 -110725950 + AT_rich Low_complexity Low_complexity 1 45 0 559 305 52 0 chr11 40057747 40057980 -110725573 + MER46C DNA MER2_type 79 323 -15 245 368 40 24 chr11 40058257 40058507 -110725046 + MIR SINE MIR 5 258 -4 853 111 15 7 chr11 40059270 40059405 -110724148 - L1PB2 LINE L1 0 6151 6016 25 0 0 0 chr11 40060004 40060029 -110723524 + AT_rich Low_complexity Low_complexity 1 25 0 313 175 48 0 chr11 40060045 40060211 -110723342 + (TA)n Simple_repeat Simple_repeat 1 174 0 22 70 0 0 chr11 40060224 40060267 -110723286 + AT_rich Low_complexity Low_complexity 1 43 0 304 142 65 7 chr11 40060267 40060422 -110723131 + (TA)n Simple_repeat Simple_repeat 1 164 0 397 159 0 69 chr11 40060433 40060622 -110722931 + (TTATA)n Simple_repeat Simple_repeat 4 179 0 281 100 20 50 chr11 40060624 40060724 -110722829 + (TATAA)n Simple_repeat Simple_repeat 5 101 0 205 109 83 13 chr11 40060724 40060889 -110722664 + (TA)n Simple_repeat Simple_repeat 1 176 0 258 232 152 0 chr11 40061705 40061817 -110721736 - MER103 DNA DNA -12 154 26 1868 198 75 39 chr11 40062145 40062639 -110720914 - MER67D LTR ERV1 0 514 3 27 87 0 0 chr11 40063264 40063333 -110720220 + AT_rich Low_complexity Low_complexity 1 69 0 498 204 35 0 chr11 40063746 40063859 -110719694 + L1MA3 LINE L1 9 125 -7440 1271 220 39 3 chr11 40063869 40064174 -110719379 + L1MA3 LINE L1 4115 4430 -3135 1914 104 7 174 chr11 40064180 40064593 -110718960 - LTR14B LTR ERVK 0 608 1 8029 189 23 6 chr11 40064594 40067829 -110715724 + L1MA3 LINE L1 4430 7719 -5 865 227 60 14 chr11 40067848 40068130 -110715423 + L1M4 LINE L1 2315 2609 -3537 707 149 2 128 chr11 40068195 40068305 -110715248 + L1MD1 LINE L1 6071 6193 -166 1223 94 0 6 chr11 40068305 40068486 -110715067 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 707 149 2 128 chr11 40068486 40068497 -110715056 + L1MD1 LINE L1 6193 6204 -155 2052 131 3 6 chr11 40068497 40068811 -110714742 - AluSp SINE Alu 0 313 1 707 149 2 128 chr11 40068811 40068885 -110714668 + L1MD1 LINE L1 6204 6358 -1 415 224 0 0 chr11 40068910 40068986 -110714567 + FRAM SINE Alu 23 98 -68 1245 255 39 11 chr11 40069011 40069392 -110714161 - L1M4 LINE L1 -2026 4120 3729 398 214 61 10 chr11 40069651 40069749 -110713804 - MIR SINE MIR 0 262 160 239 301 41 24 chr11 40069766 40069889 -110713664 - MIR SINE MIR -17 245 121 243 270 56 22 chr11 40072094 40072183 -110711370 - MIR SINE MIR 0 262 171 1437 207 24 52 chr11 40072183 40072401 -110711152 + MLT1A2 LTR MaLR 1 207 -167 2037 141 3 0 chr11 40072401 40072705 -110710848 + AluSx SINE Alu 1 305 -7 1437 207 24 52 chr11 40072705 40072865 -110710688 + MLT1A2 LTR MaLR 207 370 -4 310 261 0 0 chr11 40072867 40072932 -110710621 - MIR SINE MIR -85 177 113 267 370 110 0 chr11 40072996 40073142 -110710411 + MIR3 SINE MIR 29 190 -18 29 28 0 0 chr11 40073281 40073317 -110710236 + AT_rich Low_complexity Low_complexity 1 36 0 1715 163 32 0 chr11 40073638 40073920 -110709633 + AluSx SINE Alu 1 291 -21 913 180 92 15 chr11 40073921 40074155 -110709398 - L1MA6 LINE L1 0 6300 6047 277 388 26 0 chr11 40074282 40074434 -110709119 - MIR SINE MIR -32 230 75 411 322 103 21 chr11 40076061 40076294 -110707259 + MLT1K LTR MaLR 326 577 -11 181 309 55 0 chr11 40076758 40076813 -110706740 + L2 LINE L2 3248 3305 -8 233 0 62 0 chr11 40078213 40078245 -110705308 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1982 129 0 7 chr11 40078245 40078527 -110705026 - AluSx SINE Alu -32 280 1 25 0 0 0 chr11 40079104 40079129 -110704424 + AT_rich Low_complexity Low_complexity 1 25 0 318 345 41 35 chr11 40079333 40079504 -110704049 + MER5A DNA MER1_type 17 188 -1 2945 202 57 3 chr11 40079581 40080250 -110703303 - L1MB3 LINE L1 0 6183 5479 600 309 28 19 chr11 40080235 40080555 -110702998 - L1M4 LINE L1 -3648 2734 2412 * 1058 244 48 0 chr11 40080575 40080722 -110702831 - AluJb SINE Alu -34 278 115 360 0 0 0 chr11 40080722 40080762 -110702791 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1058 244 48 0 chr11 40080762 40080844 -110702709 - AluJb SINE Alu -197 115 38 9848 189 65 34 chr11 40080846 40083194 -110700359 - L1M4 LINE L1 -3960 2424 4 25 0 0 0 chr11 40083393 40083418 -110700135 + AT_rich Low_complexity Low_complexity 1 25 0 1166 228 38 8 chr11 40083556 40083819 -110699734 - AluJo SINE Alu -37 275 5 297 259 14 7 chr11 40084382 40084428 -110699125 + (TA)n Simple_repeat Simple_repeat 2 46 -99 1378 227 59 41 chr11 40084428 40084816 -110698737 - MSTD LTR MaLR -1 395 1 297 259 14 7 chr11 40084816 40084912 -110698641 + (TA)n Simple_repeat Simple_repeat 46 145 0 228 341 12 0 chr11 40086243 40086325 -110697228 - L2 LINE L2 -2 3311 3229 185 380 40 0 chr11 40086747 40086847 -110696706 - L2 LINE L2 -640 2674 2571 300 186 0 0 chr11 40086856 40086915 -110696638 + (TAG)n Simple_repeat Simple_repeat 2 60 0 1592 220 28 21 chr11 40086975 40087407 -110696146 + L1MC/D LINE L1 4585 5019 -1127 1394 220 16 0 chr11 40087408 40087717 -110695836 + L1MC/D LINE L1 5457 5770 -2015 1550 240 35 6 chr11 40087723 40088096 -110695457 + MLT2D LTR ERVL 1 480 -40 220 296 11 0 chr11 40088099 40088187 -110695366 + (TATG)n Simple_repeat Simple_repeat 4 92 0 22 35 0 0 chr11 40088252 40088281 -110695272 + AT_rich Low_complexity Low_complexity 1 29 0 275 57 0 0 chr11 40088389 40088424 -110695129 - MADE1 DNA Mariner 0 80 46 284 389 11 11 chr11 40088437 40088612 -110694941 - L2 LINE L2 -937 2377 2203 2351 112 23 0 chr11 40088630 40088977 -110694576 - THE1A LTR MaLR 0 355 1 11103 107 4 6 chr11 40088977 40089863 -110693690 - THE1A-int LTR MaLR 0 1580 695 1115 193 143 69 chr11 40089863 40090282 -110693271 + LTR7 LTR ERV1 1 450 0 11103 107 4 6 chr11 40090282 40090970 -110692583 - THE1A-int LTR MaLR -885 695 8 2572 105 0 0 chr11 40090970 40091321 -110692232 - THE1A LTR MaLR -3 352 2 334 326 107 46 chr11 40091540 40092000 -110691553 + MLT1J LTR MaLR 24 511 0 610 299 185 40 chr11 40092011 40092455 -110691098 + L2 LINE L2 2804 3311 -2 199 383 90 25 chr11 40092472 40092827 -110690726 - L2 LINE L2 -1106 2208 1831 31 26 0 0 chr11 40093468 40093506 -110690047 + AT_rich Low_complexity Low_complexity 1 38 0 207 289 92 13 chr11 40093773 40093849 -110689704 + MIR SINE MIR 48 129 -133 429 282 65 60 chr11 40093943 40094159 -110689394 + MIR SINE MIR 46 262 0 23 0 0 0 chr11 40094163 40094186 -110689367 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 40095563 40095586 -110687967 + AT_rich Low_complexity Low_complexity 1 23 0 2156 150 22 0 chr11 40096243 40096604 -110686949 + HSMAR2 DNA Mariner 1 369 -933 3073 265 39 54 chr11 40096610 40097656 -110685897 + L1PA11 LINE L1 9 1068 -6516 195 69 0 0 chr11 40097656 40097685 -110685868 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3073 265 39 54 chr11 40097685 40097994 -110685559 + L1PA11 LINE L1 1068 2707 -4877 15729 178 42 2 chr11 40098049 40101913 -110681640 + L1PA11 LINE L1 3669 7597 -15 4847 163 13 26 chr11 40101950 40102807 -110680746 + HSMAR2 DNA Mariner 356 1201 -101 217 340 21 21 chr11 40102865 40102962 -110680591 + MIR SINE MIR 92 188 -74 22 80 0 0 chr11 40103334 40103384 -110680169 + AT_rich Low_complexity Low_complexity 1 50 0 13534 200 16 3 chr11 40104066 40108049 -110675504 - L1PB1 LINE L1 -2 6149 2114 333 47 0 0 chr11 40109295 40109338 -110674215 + (CA)n Simple_repeat Simple_repeat 2 44 0 2245 257 66 30 chr11 40110394 40111214 -110672339 + L1MD3 LINE L1 7146 7994 -1 295 293 65 16 chr11 40111670 40111793 -110671760 + MLT1K LTR MaLR 398 526 -62 199 111 22 22 chr11 40111974 40112019 -110671534 + (TTA)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr11 40112146 40112168 -110671385 + AT_rich Low_complexity Low_complexity 1 22 0 350 217 116 29 chr11 40112535 40112673 -110670880 - MER3 DNA MER1_type -56 153 4 8209 64 5 8 chr11 40113419 40114494 -110669059 - MER11C LTR ERVK 0 1071 1 236 368 98 15 chr11 40114565 40114698 -110668855 + L2 LINE L2 3125 3268 -4 289 313 81 0 chr11 40114759 40114858 -110668695 - MIR3 SINE MIR -48 160 54 6959 218 27 6 chr11 40115398 40117095 -110666458 + L1PA16 LINE L1 3502 5231 -915 1491 119 26 63 chr11 40117095 40117363 -110666190 + AluSp SINE Alu 44 301 -12 764 167 29 0 chr11 40117363 40117613 -110665940 + GA-rich Low_complexity Low_complexity 1 257 0 264 30 0 0 chr11 40118103 40118136 -110665417 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 186 43 0 0 chr11 40118154 40118177 -110665376 + (TATG)n Simple_repeat Simple_repeat 1 23 0 337 178 29 14 chr11 40118177 40118320 -110665233 + GA-rich Low_complexity Low_complexity 1 145 0 4084 140 51 3 chr11 40118320 40119071 -110664482 + L1PA16 LINE L1 5211 5994 -172 384 252 197 8 chr11 40120317 40120444 -110663109 + MER5A DNA MER1_type 39 189 0 21 36 0 0 chr11 40120932 40120960 -110662593 + AT_rich Low_complexity Low_complexity 1 28 0 36 62 0 0 chr11 40121308 40121372 -110662181 + AT_rich Low_complexity Low_complexity 1 64 0 238 254 51 0 chr11 40122230 40122289 -110661264 + MER63A DNA MER1_type 149 210 0 1667 174 158 13 chr11 40122471 40122845 -110660708 - MSTA LTR MaLR 0 428 1 207 179 0 0 chr11 40124341 40124380 -110659173 + A-rich Low_complexity Low_complexity 2 40 0 225 87 43 22 chr11 40124987 40125033 -110658520 + (TTAAA)n Simple_repeat Simple_repeat 4 50 0 303 318 135 14 chr11 40125074 40125222 -110658331 + MIR SINE MIR 53 218 -44 972 39 0 23 chr11 40125841 40125971 -110657582 - L1PA5 LINE L1 0 6154 6028 1323 171 20 97 chr11 40127054 40127404 -110656149 - MLT1A2 LTR MaLR -48 326 4 186 242 0 0 chr11 40127458 40127491 -110656062 + MIR SINE MIR 36 68 -194 6298 199 156 22 chr11 40127721 40129269 -110654284 - MER52A LTR ERV1 0 1755 1 283 312 0 26 chr11 40130277 40130354 -110653199 + L2 LINE L2 3235 3309 -4 2541 225 54 21 chr11 40130573 40131204 -110652349 + MER82 DNA MER2_type 2 653 0 249 289 24 12 chr11 40132738 40132821 -110650732 + MIR SINE MIR 54 137 -125 189 0 0 0 chr11 40133352 40133373 -110650180 + (A)n Simple_repeat Simple_repeat 1 21 0 2026 93 6 40 chr11 40133995 40134317 -110649236 - AluY SINE Alu 0 311 1 5726 159 56 31 chr11 40134863 40136800 -110646753 + L1MA2 LINE L1 4127 6131 -173 1884 152 39 15 chr11 40136800 40137135 -110646418 - MER61A LTR ERV1 0 343 1 5726 159 56 31 chr11 40137135 40137309 -110646244 + L1MA2 LINE L1 6131 6299 -5 233 29 29 0 chr11 40137754 40137788 -110645765 + (TTTAA)n Simple_repeat Simple_repeat 3 37 0 5308 58 1 4 chr11 40137788 40138454 -110645099 - L1PA7 LINE L1 -12 6142 5477 2792 189 97 11 chr11 40141139 40141790 -110641763 - MER67C LTR ERV1 0 710 4 945 248 72 25 chr11 40142351 40143634 -110639919 - L1MDa LINE L1 -5142 1398 3 210 191 0 0 chr11 40144059 40144106 -110639447 + (CA)n Simple_repeat Simple_repeat 1 47 0 267 192 39 0 chr11 40145345 40145423 -110638130 + (TA)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr11 40145886 40145907 -110637646 + AT_rich Low_complexity Low_complexity 1 21 0 1425 204 47 62 chr11 40146866 40147268 -110636285 - MER57A LTR ERV1 0 403 8 9024 22 0 0 chr11 40148917 40150740 -110632813 + L1PA3 LINE L1 4325 6147 -8 1497 198 7 0 chr11 40151181 40151479 -110632074 - L1PA16 LINE L1 -1 6165 5866 45 102 0 0 chr11 40151980 40152137 -110631416 + AT_rich Low_complexity Low_complexity 1 157 0 428 280 149 36 chr11 40152963 40153131 -110630422 - MIR SINE MIR -72 190 4 223 303 30 0 chr11 40153361 40153460 -110630093 - MIR SINE MIR -57 205 104 763 281 40 9 chr11 40153480 40153708 -110629845 + MLT1G LTR MaLR 356 590 0 21 0 0 0 chr11 40154301 40154322 -110629231 + AT_rich Low_complexity Low_complexity 1 21 0 216 388 30 37 chr11 40155163 40155297 -110628256 - MIR3 SINE MIR -52 156 24 306 277 89 9 chr11 40155509 40155621 -110627932 - MIR SINE MIR -31 231 111 240 235 31 102 chr11 40156045 40156143 -110627410 + MIR SINE MIR 172 262 0 2355 179 2 20 chr11 40156385 40156827 -110626726 - Tigger2a DNA MER2_type 0 434 1 204 67 0 0 chr11 40156838 40156868 -110626685 + (TTC)n Simple_repeat Simple_repeat 3 32 0 1948 126 0 11 chr11 40156868 40157205 -110626348 - AluSq SINE Alu 0 334 1 745 293 159 30 chr11 40157308 40157553 -110626000 - MLT1H LTR MaLR -18 531 319 4234 128 3 5 chr11 40157553 40158187 -110625366 + MER51A LTR ERV1 1 633 -1 745 293 159 30 chr11 40158187 40158374 -110625179 - MLT1H LTR MaLR -230 319 43 198 329 61 12 chr11 40158408 40158490 -110625063 - MIR SINE MIR -113 149 64 212 0 36 0 chr11 40158789 40158817 -110624736 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 367 213 39 150 chr11 40158819 40159026 -110624527 + Charlie4 DNA MER1_type 80 263 -1698 766 151 0 8 chr11 40159033 40159159 -110624394 - FRAM SINE Alu -21 155 31 409 222 44 33 chr11 40159178 40159358 -110624195 + Charlie4 DNA MER1_type 1740 1921 -40 209 327 119 39 chr11 40159471 40159731 -110623822 + L2 LINE L2 2245 2525 -789 233 170 75 19 chr11 40160058 40160111 -110623442 - MLT1B LTR MaLR -132 258 203 1052 215 114 57 chr11 40160115 40160320 -110623233 - MLT1H-int LTR MaLR -41 1330 1099 2115 131 3 0 chr11 40160320 40160626 -110622927 - AluSg SINE Alu -3 307 1 1052 215 114 57 chr11 40160626 40160736 -110622817 - MLT1H-int LTR MaLR -272 1099 997 192 125 0 0 chr11 40161705 40161737 -110621816 + (GAAA)n Simple_repeat Simple_repeat 4 35 0 429 268 38 44 chr11 40162283 40162466 -110621087 - MER117 DNA MER1_type -10 187 6 264 362 141 7 chr11 40162467 40162616 -110620937 + MIR SINE MIR 37 205 -57 2023 148 0 3 chr11 40162989 40163299 -110620254 + AluSg SINE Alu 1 309 -1 27 49 0 0 chr11 40163372 40163413 -110620140 + AT_rich Low_complexity Low_complexity 1 41 0 423 277 104 59 chr11 40164817 40165037 -110618516 + MIR SINE MIR 3 232 -30 427 248 18 37 chr11 40165256 40165365 -110618188 + L2 LINE L2 3207 3313 0 228 35 0 0 chr11 40165391 40165420 -110618133 + (TG)n Simple_repeat Simple_repeat 2 30 0 259 311 98 8 chr11 40166624 40166746 -110616807 + MIR3 SINE MIR 71 203 -5 3327 120 26 4 chr11 40166895 40167395 -110616158 + MER9 LTR ERVK 1 511 0 1579 214 0 22 chr11 40167686 40168004 -110615549 + AluJo SINE Alu 1 311 -1 204 135 0 0 chr11 40168147 40168184 -110615369 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 204 353 29 0 chr11 40168237 40168305 -110615248 + L2 LINE L2 2607 2676 -638 291 28 0 0 chr11 40168442 40168478 -110615075 + (CA)n Simple_repeat Simple_repeat 2 37 0 409 303 86 17 chr11 40168782 40168957 -110614596 + MER63A DNA MER1_type 5 191 -19 262 322 18 28 chr11 40169273 40169395 -110614158 - MIR SINE MIR -67 141 30 1975 168 80 5 chr11 40169714 40170089 -110613464 + MER57A LTR ERV1 1 403 0 189 121 0 0 chr11 40170431 40170464 -110613089 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 268 131 16 16 chr11 40170909 40170970 -110612583 + GA-rich Low_complexity Low_complexity 3 63 0 1650 185 16 41 chr11 40171012 40171379 -110612174 - MER4D LTR ERV1 -2 901 544 351 159 35 29 chr11 40171373 40171485 -110612068 - MER4E LTR ERV1 -588 284 64 * 1003 165 151 33 chr11 40171481 40171696 -110611857 - MER49 LTR ERV1 -640 283 63 1840 159 3 25 chr11 40171696 40172010 -110611543 + AluSx SINE Alu 1 307 -5 1003 165 151 33 chr11 40172010 40172082 -110611471 - MER49 LTR ERV1 -860 63 1 652 298 19 66 chr11 40172144 40172463 -110611090 + MER77 LTR ERV1 54 357 -248 2008 209 32 7 chr11 40172465 40172876 -110610677 - MSTB LTR MaLR -5 421 1 308 242 40 20 chr11 40172937 40173036 -110610517 + MER77 LTR ERV1 466 566 -39 1982 218 37 88 chr11 40173753 40174431 -110609122 - LTR19C LTR ERV1 0 779 137 260 191 56 56 chr11 40174401 40174490 -110609063 - MER61E LTR ERV1 -480 89 1 * 22 0 0 0 chr11 40175204 40175226 -110608327 + AT_rich Low_complexity Low_complexity 1 22 0 5978 130 22 17 chr11 40175275 40176239 -110607314 + LTR5 LTR ERVK 1 969 0 1822 133 31 3 chr11 40177148 40177434 -110606119 + AluSx SINE Alu 1 294 -18 259 318 77 46 chr11 40177794 40177989 -110605564 - MIR SINE MIR -1 261 61 317 265 12 48 chr11 40178102 40178185 -110605368 - L2 LINE L2 0 3272 3193 348 90 0 0 chr11 40178191 40178246 -110605307 + Alu SINE Alu 2 47 -255 274 327 37 31 chr11 40178302 40178464 -110605089 - MIR SINE MIR -4 258 96 183 308 0 0 chr11 40178536 40178575 -110604978 - MIR SINE MIR -208 54 16 22 0 0 0 chr11 40180339 40180361 -110603192 + AT_rich Low_complexity Low_complexity 1 22 0 237 316 63 0 chr11 40180599 40180678 -110602875 - L2 LINE L2 -4 3268 3185 200 220 0 17 chr11 40180928 40180987 -110602566 + T-rich Low_complexity Low_complexity 3 60 0 1716 110 78 41 chr11 40180989 40181308 -110602245 - L1MA5A LINE L1 -4 6293 5963 2238 62 0 28 chr11 40182325 40182663 -110600890 + AluY SINE Alu 1 330 0 442 304 99 30 chr11 40182995 40183196 -110600357 - HAL1 LINE L1 -1033 1474 1260 186 43 0 0 chr11 40183475 40183498 -110600055 + (TG)n Simple_repeat Simple_repeat 2 24 0 568 235 7 7 chr11 40183799 40183952 -110599601 - L1MA5 LINE L1 0 6300 6148 392 272 29 10 chr11 40184444 40184547 -110599006 + L2 LINE L2 3199 3303 -10 287 19 77 0 chr11 40184885 40184937 -110598616 + (TA)n Simple_repeat Simple_repeat 1 56 0 804 198 68 19 chr11 40186405 40186567 -110596986 - MER8 DNA MER2_type 0 239 70 314 239 0 15 chr11 40186834 40186901 -110596652 - MER8 DNA MER2_type -173 66 1 289 340 57 67 chr11 40186950 40187247 -110596306 + L2 LINE L2 203 496 -2818 1810 201 17 8 chr11 40187380 40187739 -110595814 + MLT1A1 LTR MaLR 3 364 -1 2711 165 23 4 chr11 40187901 40188423 -110595130 + L1MA8 LINE L1 5759 6290 -1 954 257 192 21 chr11 40188423 40188804 -110594749 - LTR40b LTR ERVL -9 453 8 2258 271 63 17 chr11 40189133 40190504 -110593049 - L1MEc LINE L1 -2979 3236 1850 2117 214 62 45 chr11 40190515 40191140 -110592413 - L1MC3 LINE L1 -17 7768 7133 1086 282 115 27 chr11 40191208 40192085 -110591468 - L1MEc LINE L1 -4627 1769 816 510 341 25 40 chr11 40192115 40192438 -110591115 - L1MEc LINE L1 -5936 460 143 22 70 0 0 chr11 40192519 40192562 -110590991 + AT_rich Low_complexity Low_complexity 1 43 0 2000 131 3 13 chr11 40192607 40192920 -110590633 - AluSx SINE Alu -1 311 2 24 32 0 0 chr11 40193377 40193408 -110590145 + AT_rich Low_complexity Low_complexity 1 31 0 383 260 10 19 chr11 40193572 40193676 -110589877 - MIR SINE MIR -86 176 74 314 339 0 36 chr11 40193890 40194002 -110589551 - MIR3 SINE MIR -54 154 47 1618 187 82 0 chr11 40194288 40194604 -110588949 - L1MC1 LINE L1 -6 6327 5986 2129 106 7 0 chr11 40194650 40194942 -110588611 + AluSq SINE Alu 1 294 -19 323 268 154 8 chr11 40195968 40196091 -110587462 - MIR SINE MIR -3 259 119 525 285 60 4 chr11 40196110 40196345 -110587208 + L1M4 LINE L1 1138 1385 -5157 321 329 13 0 chr11 40196345 40196500 -110587053 - L1MEc LINE L1 -3805 3152 2996 1026 180 15 5 chr11 40196521 40196727 -110586826 - L1MA6 LINE L1 0 6300 6093 290 265 10 0 chr11 40196770 40196868 -110586685 - L1MEc LINE L1 -4100 3038 2940 999 87 16 0 chr11 40197062 40197189 -110586364 - AluSc SINE Alu -180 129 1 418 122 11 11 chr11 40197470 40197560 -110585993 + (TA)n Simple_repeat Simple_repeat 2 91 0 720 300 46 40 chr11 40197708 40198228 -110585325 - L1MEc LINE L1 -4595 2543 2021 263 297 112 48 chr11 40198278 40198527 -110585026 - L1MEc LINE L1 -6583 276 12 2077 120 7 3 chr11 40199067 40199375 -110584178 + AluSc SINE Alu 1 309 0 34 0 0 0 chr11 40200037 40200071 -110583482 + AT_rich Low_complexity Low_complexity 1 34 0 202 242 16 0 chr11 40200304 40200366 -110583187 + (TA)n Simple_repeat Simple_repeat 2 64 0 1411 219 48 11 chr11 40200671 40201023 -110582530 - MLT1A1 LTR MaLR 0 365 1 295 345 153 27 chr11 40201045 40201268 -110582285 - MIR SINE MIR 0 262 12 2176 100 6 13 chr11 40202116 40202427 -110581126 + AluSc SINE Alu 1 309 0 2485 137 0 11 chr11 40203438 40203817 -110579736 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr11 40205635 40205656 -110577897 + AT_rich Low_complexity Low_complexity 1 21 0 440 312 174 36 chr11 40206220 40206473 -110577080 + MER69 DNA AcHobo 1 288 -938 232 233 0 0 chr11 40206489 40206532 -110577021 + (TG)n Simple_repeat Simple_repeat 2 44 0 378 238 141 13 chr11 40206667 40206894 -110576659 + MER69 DNA AcHobo 2163 2418 -108 29 28 0 0 chr11 40207414 40207450 -110576103 + AT_rich Low_complexity Low_complexity 1 36 0 5246 204 66 31 chr11 40207481 40207782 -110575771 - THE1C-int LTR MaLR -442 1209 920 1825 163 10 47 chr11 40207782 40208169 -110575384 - THE1C LTR MaLR -2 373 1 5246 204 66 31 chr11 40208169 40208813 -110574740 - THE1C-int LTR MaLR -731 920 213 1917 153 137 16 chr11 40208813 40209193 -110574360 + MSTA LTR MaLR 3 428 0 5246 204 66 31 chr11 40209193 40209412 -110574141 - THE1C-int LTR MaLR -1438 213 3 1760 154 162 11 chr11 40209414 40209785 -110573768 - MSTA LTR MaLR 0 428 2 234 330 100 10 chr11 40210197 40210297 -110573256 - MIR3 SINE MIR -25 183 75 1619 210 79 51 chr11 40212660 40213151 -110570402 + MLT1D LTR MaLR 1 505 0 1558 198 40 98 chr11 40213455 40213523 -110570030 - MLT1C LTR MaLR 0 467 397 2103 124 51 23 chr11 40213523 40213877 -110569676 + THE1B LTR MaLR 1 364 0 1558 198 40 98 chr11 40213877 40214287 -110569266 - MLT1C LTR MaLR -70 397 17 605 259 17 97 chr11 40214439 40214729 -110568824 + MER93b LTR ERV1 20 286 -87 504 310 38 5 chr11 40214894 40215109 -110568444 - MLT2E LTR ERVL -402 226 1 643 220 19 16 chr11 40215426 40215478 -110568075 - L1MA8 LINE L1 -26 6274 6224 204 40 0 0 chr11 40215478 40215503 -110568050 + (CA)n Simple_repeat Simple_repeat 2 26 0 643 220 19 16 chr11 40215503 40215642 -110567911 - L1MA8 LINE L1 -76 6224 6077 201 259 17 17 chr11 40216061 40216119 -110567434 + CT-rich Low_complexity Low_complexity 3 60 0 2215 187 31 39 chr11 40216163 40216676 -110566877 + LTR22 LTR ERVK 1 509 0 7425 35 0 0 chr11 40216821 40217975 -110565578 - L1PA3 LINE L1 0 6155 5043 329 248 124 13 chr11 40217953 40218106 -110565447 - L1MB8 LINE L1 -68 6110 5941 * 2183 206 63 12 chr11 40218344 40218854 -110564699 + L1MA8 LINE L1 5728 6263 -28 21 36 0 0 chr11 40219446 40219474 -110564079 + AT_rich Low_complexity Low_complexity 1 28 0 304 318 150 6 chr11 40220008 40220181 -110563372 + L3b LINE CR1 1109 1306 -277 212 0 36 0 chr11 40221636 40221664 -110561889 + (TTTTTG)n Simple_repeat Simple_repeat 5 33 0 580 196 0 23 chr11 40221678 40221811 -110561742 + L1PB2 LINE L1 6019 6148 -3 536 246 35 0 chr11 40221946 40222060 -110561493 + MER5A DNA MER1_type 12 129 -60 2791 128 129 27 chr11 40222060 40222617 -110560936 - LTR18B LTR ERVL 0 614 1 3403 177 6 0 chr11 40222776 40223318 -110560235 - HERVL18 LTR ERVL -2556 3491 2947 1943 209 5 29 chr11 40223309 40223687 -110559866 - HERVL18 LTR ERVL -2959 3088 2720 * 1213 187 23 18 chr11 40223663 40223963 -110559590 - HERVL18 LTR ERVL -3570 2477 2119 * 1438 201 47 21 chr11 40224064 40224496 -110559057 - HERVL18 LTR ERVL -5381 666 19 3064 134 53 36 chr11 40224517 40225121 -110558432 - LTR18B LTR ERVL 0 614 1 362 200 0 0 chr11 40225121 40225186 -110558367 + MER5A DNA MER1_type 125 189 0 183 348 57 69 chr11 40226148 40226274 -110557279 - L2 LINE L2 -140 3173 3050 461 328 16 0 chr11 40226274 40226457 -110557096 - MER5A DNA MER1_type -3 186 1 183 348 57 69 chr11 40226457 40226577 -110556976 - L2 LINE L2 -263 3050 2930 255 305 124 33 chr11 40226652 40226862 -110556691 - L2 LINE L2 -448 2866 2638 534 253 58 86 chr11 40227126 40227383 -110556170 + MIR SINE MIR 12 261 -1 213 295 0 0 chr11 40227807 40227868 -110555685 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 2496 188 8 23 chr11 40228631 40229116 -110554437 - MER66B LTR ERV1 0 486 9 889 263 76 113 chr11 40231706 40232300 -110551253 + MER21B LTR ERV1 22 593 -270 1272 255 48 101 chr11 40232484 40233048 -110550505 + MLT1F LTR MaLR 1 534 -8 926 343 119 48 chr11 40233155 40233373 -110550180 + L2 LINE L2 1927 2128 -1185 1123 203 127 41 chr11 40233373 40233616 -110549937 + MER2 DNA MER2_type 2 280 -64 234 0 0 0 chr11 40233616 40233642 -110549911 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1123 203 127 41 chr11 40233642 40233714 -110549839 + MER2 DNA MER2_type 280 344 0 926 343 119 48 chr11 40233714 40234187 -110549366 + L2 LINE L2 2128 2566 -747 738 165 32 6 chr11 40234187 40234345 -110549208 - L1MA8 LINE L1 -5 6286 6125 926 343 119 48 chr11 40234345 40234779 -110548774 + L2 LINE L2 2566 3114 -199 22 56 0 0 chr11 40234862 40234898 -110548655 + AT_rich Low_complexity Low_complexity 1 36 0 244 229 0 0 chr11 40234948 40234996 -110548557 - MIR SINE MIR -144 118 71 1908 177 61 54 chr11 40235736 40236375 -110547178 + MER39 LTR ERV1 1 707 0 23 0 0 0 chr11 40237160 40237183 -110546370 + AT_rich Low_complexity Low_complexity 1 23 0 2370 153 41 2 chr11 40237341 40237753 -110545800 - MSTA LTR MaLR 0 428 1 1719 206 20 43 chr11 40237986 40238379 -110545174 - MLT1B LTR MaLR -6 384 1 847 194 13 129 chr11 40239778 40240088 -110543465 - L1MC5 LINE L1 -1006 6955 6682 191 219 301 14 chr11 40240557 40240630 -110542923 + MIR3 SINE MIR 12 105 -103 422 160 8 48 chr11 40240866 40240991 -110542562 + GA-rich Low_complexity Low_complexity 1 120 0 301 143 0 20 chr11 40241598 40241647 -110541906 + MIR3 SINE MIR 148 195 -13 381 144 38 30 chr11 40241710 40241842 -110541711 + (TA)n Simple_repeat Simple_repeat 1 133 0 284 281 24 84 chr11 40243987 40244154 -110539399 - L2 LINE L2 -15 3298 3142 21 0 0 0 chr11 40244672 40244693 -110538860 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr11 40244744 40244783 -110538770 + AT_rich Low_complexity Low_complexity 1 39 0 1259 235 35 25 chr11 40245063 40245378 -110538175 - MLT1E LTR MaLR 0 593 276 584 0 28 0 chr11 40245435 40245506 -110538047 + (CATAA)n Simple_repeat Simple_repeat 3 75 0 21 0 0 0 chr11 40246178 40246199 -110537354 + AT_rich Low_complexity Low_complexity 1 21 0 22 72 0 36 chr11 40246311 40246394 -110537159 + AT_rich Low_complexity Low_complexity 1 80 0 1989 116 10 0 chr11 40246494 40246786 -110536767 + AluY SINE Alu 17 311 0 3280 197 30 79 chr11 40246907 40247925 -110535628 + LTR5 LTR ERVK 1 969 0 365 375 69 30 chr11 40247939 40248302 -110535251 - L2 LINE L2 0 3313 2937 322 345 35 6 chr11 40248622 40248793 -110534760 + MLT1L LTR MaLR 98 273 -342 321 315 0 0 chr11 40249183 40249275 -110534278 - MIR SINE MIR -13 249 158 392 296 142 22 chr11 40249364 40249590 -110533963 + MLT1J1 LTR MaLR 67 319 -127 214 207 0 86 chr11 40251409 40251467 -110532086 - MER5B DNA MER1_type -125 53 1 328 298 99 20 chr11 40251477 40251628 -110531925 - MIR SINE MIR -71 191 29 336 309 27 27 chr11 40252454 40252603 -110530950 + L1ME LINE L1 5433 5581 -540 303 28 0 0 chr11 40252638 40252674 -110530879 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 5090 105 1 7 chr11 40252674 40253410 -110530143 - L1PA8 LINE L1 -24 6148 5417 2267 75 23 3 chr11 40253422 40253729 -110529824 - L1PA7 LINE L1 -5 6149 5837 357 283 8 0 chr11 40253810 40253930 -110529623 + (TA)n Simple_repeat Simple_repeat 1 121 0 198 220 0 0 chr11 40253957 40254016 -110529537 + (TA)n Simple_repeat Simple_repeat 2 60 0 327 157 25 25 chr11 40254079 40254200 -110529353 + (TA)n Simple_repeat Simple_repeat 1 121 0 23 0 0 0 chr11 40254485 40254508 -110529045 + AT_rich Low_complexity Low_complexity 1 23 0 239 371 0 0 chr11 40254613 40254683 -110528870 - MIR SINE MIR -102 106 37 2647 32 3 0 chr11 40256848 40257158 -110526395 + AluY SINE Alu 1 311 0 11576 243 28 17 chr11 40257435 40257813 -110525740 - L1PB4 LINE L1 0 6859 6487 270 0 0 0 chr11 40257813 40257843 -110525710 + (CA)n Simple_repeat Simple_repeat 2 31 0 11576 243 28 17 chr11 40257843 40262545 -110521008 - L1PB4 LINE L1 -372 6487 1705 7332 95 32 3 chr11 40362546 40363694 -110419859 - L1P LINE L1 -1531 4615 3435 21 36 0 0 chr11 40363812 40363840 -110419713 + AT_rich Low_complexity Low_complexity 1 28 0 309 250 9 19 chr11 40363913 40364021 -110419532 + (TA)n Simple_repeat Simple_repeat 2 108 0 212 247 24 35 chr11 40364214 40364299 -110419254 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 371 184 40 17 chr11 40364300 40364474 -110419079 + (TA)n Simple_repeat Simple_repeat 2 179 0 21 71 0 0 chr11 40364521 40364563 -110418990 + AT_rich Low_complexity Low_complexity 1 42 0 282 294 59 50 chr11 40365471 40365956 -110417597 - L1ME LINE L1 -635 5529 5041 276 265 20 10 chr11 40366333 40366435 -110417118 - LTR1 LTR ERV1 -1 784 682 289 293 40 0 chr11 40366619 40366718 -110416835 + MER115 DNA AcHobo 590 692 -1 1435 84 0 0 chr11 40367697 40367888 -110415665 - LTR17 LTR ERV1 -589 191 1 3156 175 100 16 chr11 40367976 40368683 -110414870 + LTR1B LTR ERV1 1 782 -3 275 338 19 6 chr11 40369021 40369178 -110414375 + L1 LINE L1 4052 4210 -1936 230 20 41 41 chr11 40370499 40370548 -110413005 + (TTA)n Simple_repeat Simple_repeat 3 51 0 3029 74 2 5 chr11 40371802 40372205 -110411348 + L1PA8 LINE L1 5763 6164 -8 239 297 76 0 chr11 40372430 40372548 -110411005 + L1M4 LINE L1 3317 3443 -2703 323 301 79 64 chr11 40373486 40373891 -110409662 + L1ME LINE L1 541 951 -5119 469 263 35 91 chr11 40374995 40375227 -110408326 - MIR SINE MIR 0 262 44 1994 204 34 9 chr11 40375876 40376317 -110407236 + LTR47A LTR ERVL 1 452 0 1855 87 0 43 chr11 40376544 40376820 -110406733 + AluY SINE Alu 45 308 -3 220 307 89 10 chr11 40477145 40477246 -110306307 - L2 LINE L2 -1279 2035 1927 351 330 80 24 chr11 40477515 40477803 -110305750 + L1M4 LINE L1 4488 4791 -1355 24 67 0 0 chr11 40478109 40478154 -110305399 + AT_rich Low_complexity Low_complexity 1 45 0 28 48 0 0 chr11 40478325 40478367 -110305186 + AT_rich Low_complexity Low_complexity 1 42 0 977 170 25 0 chr11 40478747 40478947 -110304606 - L1MA4 LINE L1 -9 6291 6087 38 22 0 0 chr11 40479077 40479122 -110304431 + AT_rich Low_complexity Low_complexity 1 45 0 235 167 19 0 chr11 40479168 40479222 -110304331 + (TTTA)n Simple_repeat Simple_repeat 4 58 0 * 444 144 50 56 chr11 40479195 40479375 -110304178 + (TA)n Simple_repeat Simple_repeat 1 179 0 483 270 29 59 chr11 40479389 40479593 -110303960 + LTR16A LTR ERVL 161 358 -92 345 24 0 0 chr11 40479727 40479769 -110303784 + (TG)n Simple_repeat Simple_repeat 2 43 0 2173 203 20 99 chr11 40480322 40481012 -110302541 + L1MC2 LINE L1 5544 6179 -165 283 202 24 0 chr11 40481398 40481482 -110302071 + (TA)n Simple_repeat Simple_repeat 2 87 0 251 330 0 18 chr11 40481685 40481797 -110301756 + HAL1b LINE L1 380 489 -859 4300 181 27 11 chr11 40481924 40483273 -110300280 + L1P4 LINE L1 4402 5775 -391 2636 89 96 5 chr11 40483778 40484183 -110299370 - LTR7 LTR ERV1 -8 442 1 595 242 0 23 chr11 40484344 40484472 -110299081 - FLAM_A SINE Alu -8 125 1 1932 134 29 13 chr11 40485355 40485661 -110297892 + AluSx SINE Alu 1 311 -1 185 62 0 31 chr11 40487622 40487654 -110295899 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 34 42 0 0 chr11 40488171 40488219 -110295334 + AT_rich Low_complexity Low_complexity 1 48 0 315 0 0 0 chr11 40488392 40488427 -110295126 + (TG)n Simple_repeat Simple_repeat 2 36 0 1172 253 108 50 chr11 40488466 40489028 -110294525 - MLT1G1 LTR MaLR 0 595 1 26 30 0 0 chr11 40489335 40489368 -110294185 + AT_rich Low_complexity Low_complexity 1 33 0 1154 86 0 0 chr11 40489736 40489887 -110293666 + AluSg/x SINE Alu 157 307 -5 517 347 31 5 chr11 40489918 40490111 -110293442 + MIR SINE MIR 51 248 -14 797 226 30 103 chr11 40490415 40490457 -110293096 - MLT2C1 LTR ERVL -20 377 333 378 0 0 0 chr11 40490457 40490499 -110293054 + (CA)n Simple_repeat Simple_repeat 2 43 0 797 226 30 103 chr11 40490499 40490863 -110292690 - MLT2C1 LTR ERVL -64 333 1 269 333 11 0 chr11 40490877 40490970 -110292583 + L2 LINE L2 3219 3312 -1 285 256 16 70 chr11 40492197 40492326 -110291227 + MER103 DNA DNA 12 133 -33 191 102 34 34 chr11 40492670 40492729 -110290824 + (TA)n Simple_repeat Simple_repeat 1 59 0 420 171 24 29 chr11 40492744 40492914 -110290639 + (TA)n Simple_repeat Simple_repeat 1 169 0 473 295 97 87 chr11 40493826 40494359 -110289194 + HAL1 LINE L1 843 1386 -1121 207 88 0 0 chr11 40494359 40494393 -110289160 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 473 295 97 87 chr11 40494393 40494582 -110288971 + HAL1 LINE L1 1386 1572 -935 270 357 24 8 chr11 40496077 40496203 -110287350 - L2 LINE L2 0 3313 3186 3298 134 7 31 chr11 40496356 40496895 -110286658 + MER1A DNA MER1_type 1 526 -1 321 89 0 0 chr11 40497035 40497080 -110286473 + (TG)n Simple_repeat Simple_repeat 1 45 0 207 349 0 12 chr11 40497169 40497252 -110286301 + MIR SINE MIR 75 156 -106 568 318 51 0 chr11 40497628 40497842 -110285711 + MLT1J2 LTR MaLR 22 246 -204 189 154 0 0 chr11 40498066 40498105 -110285448 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 697 77 0 94 chr11 40498343 40498460 -110285093 - AluSc SINE Alu -131 178 73 977 65 0 0 chr11 40498460 40498584 -110284969 + AluY SINE Alu 181 304 -7 6469 162 46 35 chr11 40498679 40498907 -110284646 - HSMAR2 DNA Mariner -4 1298 1074 1471 106 53 46 chr11 40498907 40499190 -110284363 - L1MA2 LINE L1 0 6304 6020 6469 162 46 35 chr11 40499190 40500244 -110283309 - HSMAR2 DNA Mariner -228 1074 2 29 28 0 0 chr11 40500884 40500920 -110282633 + AT_rich Low_complexity Low_complexity 1 36 0 993 74 0 0 chr11 40501305 40501440 -110282113 + (GAAAA)n Simple_repeat Simple_repeat 2 136 0 208 333 0 73 chr11 40501829 40501952 -110281601 + L2 LINE L2 2898 3011 -261 465 353 40 0 chr11 40502111 40502284 -110281269 - MIR SINE MIR -14 248 69 182 423 72 0 chr11 40502346 40502457 -110281096 + L2 LINE L2 3154 3272 0 1227 175 66 83 chr11 40502580 40502928 -110280625 + MSTB1 LTR MaLR 83 424 -8 735 271 28 40 chr11 40502932 40503179 -110280374 - MER110 LTR ERV1 -189 302 59 388 264 74 25 chr11 40505154 40505315 -110278238 + MIR SINE MIR 3 176 -65 524 333 38 5 chr11 40506034 40506244 -110277309 - MIR SINE MIR -12 250 34 498 279 32 64 chr11 40506250 40506530 -110277023 - LTR37B LTR ERV1 0 468 198 24 0 0 0 chr11 40506577 40506601 -110276952 + AT_rich Low_complexity Low_complexity 1 24 0 568 234 198 25 chr11 40506786 40507055 -110276498 - MER52A LTR ERV1 -137 894 283 738 244 12 6 chr11 40507097 40507261 -110276292 - LTR28 LTR ERV1 -855 165 1 203 273 0 0 chr11 40507336 40507391 -110276162 - MIR SINE MIR -111 151 97 235 203 20 61 chr11 40507503 40507651 -110275902 + (TTATA)n Simple_repeat Simple_repeat 4 145 0 229 363 62 26 chr11 40507806 40507919 -110275634 - L2 LINE L2 -8 3264 3148 569 335 36 22 chr11 40508457 40508732 -110274821 + LTR16B LTR ERVL 134 412 -52 1377 124 9 0 chr11 40510674 40510892 -110272661 - L1PA13 LINE L1 -6 6157 5938 366 292 62 23 chr11 40511035 40511292 -110272261 - L1MC4a LINE L1 -1862 5946 5680 1362 202 31 87 chr11 40512235 40513588 -110269965 + L1MD3 LINE L1 5385 5651 -533 2455 147 28 14 chr11 40512741 40513163 -110270390 - MSTA LTR MaLR 0 428 1 1007 184 34 59 chr11 40513163 40513229 -110270324 + L1MB7 LINE L1 5827 5850 -334 2135 135 0 0 chr11 40513229 40513541 -110270012 + AluSx SINE Alu 1 312 0 1007 184 34 59 chr11 40513541 40513625 -110269928 + L1MB7 LINE L1 5850 5935 -249 451 148 12 0 chr11 40513643 40513724 -110269829 + L1MB7 LINE L1 6084 6165 -19 285 258 0 62 chr11 40513744 40513841 -110269712 - L2 LINE L2 -957 2357 2267 314 315 91 14 chr11 40514049 40514192 -110269361 - MIR SINE MIR -42 220 67 416 290 97 14 chr11 40514250 40514395 -110269158 + MER5B DNA MER1_type 1 157 -21 367 320 160 13 chr11 40515619 40515775 -110267778 + MER5A DNA MER1_type 10 188 -1 189 355 136 7 chr11 40516391 40516546 -110267007 + MIR3 SINE MIR 30 204 -4 218 222 0 56 chr11 40517829 40517883 -110265670 - MIR SINE MIR -89 173 123 27 0 0 0 chr11 40518304 40518331 -110265222 + AT_rich Low_complexity Low_complexity 1 27 0 322 247 68 49 chr11 40518635 40518917 -110264636 - L1MC5 LINE L1 -188 7854 7455 2581 63 209 165 chr11 40518919 40519518 -110264035 + LTR12 LTR ERV1 90 714 0 1016 47 0 0 chr11 40519621 40519748 -110263805 - L1PA5 LINE L1 -174 5980 5854 1213 48 0 42 chr11 40519748 40519912 -110263641 + L1PA5 LINE L1 5989 6146 -8 647 261 55 68 chr11 40520479 40521027 -110262526 - L1MC4 LINE L1 -394 7442 6962 199 373 46 7 chr11 40521083 40521203 -110262350 + MIR SINE MIR 16 137 -71 483 287 135 22 chr11 40522512 40522742 -110260811 + MIR SINE MIR 3 258 -4 207 0 0 0 chr11 40523817 40523840 -110259713 + (CA)n Simple_repeat Simple_repeat 2 24 0 220 313 0 15 chr11 40525012 40525079 -110258474 - L2 LINE L2 -193 3079 3014 1769 237 114 16 chr11 40526699 40527812 -110255741 - L1MCa LINE L1 -3317 3109 1756 1548 137 0 65 chr11 40527812 40528115 -110255438 - AluSx SINE Alu 0 312 36 1769 237 114 16 chr11 40528115 40528315 -110255238 - L1MCa LINE L1 -4670 1756 1577 882 164 52 19 chr11 40528680 40528893 -110254660 + L1MA7 LINE L1 6072 6291 0 23 78 0 0 chr11 40528893 40528944 -110254609 + AT_rich Low_complexity Low_complexity 1 51 0 4253 33 0 0 chr11 40529204 40529725 -110253828 + L1P LINE L1 4780 5300 -846 532 342 43 18 chr11 40529867 40530142 -110253411 - HERV16 LTR ERVL -2083 2913 2658 938 311 62 42 chr11 40530355 40530875 -110252678 - HERV16 LTR ERVL -2623 2373 1844 1081 135 39 22 chr11 40530979 40531208 -110252345 + L1M4c LINE L1 2101 2333 -4051 478 220 9 0 chr11 40531210 40531319 -110252234 + L1M4c LINE L1 3783 3892 -2490 1449 189 49 40 chr11 40531320 40531690 -110251863 - THE1C LTR MaLR 0 375 3 1923 153 3 6 chr11 40531692 40532012 -110251541 - THE1C-int LTR MaLR 0 1651 1333 29 0 0 0 chr11 40532698 40532727 -110250826 + AT_rich Low_complexity Low_complexity 1 29 0 228 100 0 0 chr11 40533395 40533425 -110250128 + MLT2D LTR ERVL 385 414 0 1812 171 0 23 chr11 40533479 40533783 -110249770 + AluJb SINE Alu 1 297 -15 212 281 0 0 chr11 40533796 40533853 -110249700 + (TA)n Simple_repeat Simple_repeat 2 58 0 1775 166 27 14 chr11 40533938 40534234 -110249319 - AluSx SINE Alu -12 300 1 347 119 102 0 chr11 40534626 40534685 -110248868 - THE1C LTR MaLR -310 65 1 1808 109 15 0 chr11 40534685 40534952 -110248601 - THE1C-int LTR MaLR 0 1580 1310 8449 103 17 4 chr11 40534957 40536129 -110247424 - HERVL LTR ERVL -2000 3654 2468 11890 102 17 6 chr11 40536229 40537968 -110245585 - HERV9 LTR ERV1 -6082 2317 559 2243 267 73 17 chr11 40538166 40539282 -110244271 - L1M4 LINE L1 -1062 5084 3906 1582 186 30 0 chr11 40539382 40539678 -110243875 + L1MC1 LINE L1 6001 6305 -28 22 56 0 0 chr11 40539988 40540024 -110243529 + AT_rich Low_complexity Low_complexity 1 36 0 312 332 77 33 chr11 40540388 40540725 -110242828 + L1M4 LINE L1 3322 3673 -2473 1687 174 8 110 chr11 40540734 40541108 -110242445 + Tigger3(Golem) DNA MER2_type 9 3024 -5 391 274 18 6 chr11 40541108 40541272 -110242281 + (TA)n Simple_repeat Simple_repeat 1 166 0 299 276 0 32 chr11 40541416 40541539 -110242014 + L1M4 LINE L1 4531 4649 -1497 4257 156 52 67 chr11 40542153 40542377 -110241176 - Tigger2 DNA MER2_type -6 2712 2486 1874 157 3 3 chr11 40542377 40542664 -110240889 - AluSx SINE Alu -25 287 1 4257 156 52 67 chr11 40542664 40543338 -110240215 - Tigger2 DNA MER2_type -232 2486 1827 390 191 36 73 chr11 40543443 40543553 -110240000 + LTR38B LTR ERV1 8 113 -497 1121 232 14 7 chr11 40543576 40543860 -110239693 + L1 LINE L1 4154 4439 -1707 242 324 198 28 chr11 40545151 40545333 -110238220 - L3 LINE CR1 -71 1506 1294 723 143 14 43 chr11 40545379 40545519 -110238034 - THE1C LTR MaLR 0 375 240 6927 124 6 4 chr11 40545631 40546638 -110236915 + THE1C-int LTR MaLR 572 1580 0 2104 149 16 19 chr11 40546638 40547014 -110236539 + THE1C LTR MaLR 1 375 0 1230 196 26 22 chr11 40547016 40547286 -110236267 + AluJo SINE Alu 22 292 -20 1464 197 7 0 chr11 40547286 40547575 -110235978 - L1PA15-16 LINE L1 -4309 2540 2250 3425 174 29 18 chr11 40547678 40548885 -110234668 + L1P5 LINE L1 4551 5769 -382 347 269 34 50 chr11 40549056 40549175 -110234378 - LTR16A LTR ERVL -277 173 57 5264 161 25 38 chr11 40550318 40551290 -110232263 + L1PA15-16 LINE L1 979 1937 -4912 1494 165 11 4 chr11 40551290 40551557 -110231996 - AluSp SINE Alu -16 297 29 211 169 68 51 chr11 40551816 40551875 -110231678 + L2 LINE L2 2440 2499 -815 252 59 0 0 chr11 40552368 40552402 -110231151 + (TG)n Simple_repeat Simple_repeat 2 35 0 271 283 106 9 chr11 40553018 40553131 -110230422 - MIR SINE MIR -10 252 129 456 159 0 0 chr11 40553398 40553467 -110230086 + Tigger2 DNA MER2_type 1 69 -2649 * 2165 201 20 11 chr11 40553451 40553899 -110229654 + Tigger2 DNA MER2_type 2267 2718 0 5539 221 25 28 chr11 40554748 40556216 -110227337 - L1 LINE L1 -1173 4973 3510 1150 236 131 73 chr11 40556348 40557183 -110226370 + L1ME2 LINE L1 5264 6152 -12 426 252 19 0 chr11 40557396 40557499 -110226054 + L1MD2 LINE L1 6028 6132 -227 2806 125 68 177 chr11 40557602 40558045 -110225508 + LTR12 LTR ERV1 37 107 -607 2581 51 0 3 chr11 40558045 40558357 -110225196 - AluY SINE Alu 0 311 1 2806 125 68 177 chr11 40558357 40558906 -110224647 + LTR12 LTR ERV1 107 714 0 697 168 20 13 chr11 40558906 40559038 -110224515 + HERV9 LTR ERV1 40 172 -8227 379 228 130 118 chr11 40559740 40559882 -110223671 + LTR16A1 LTR ERVL 1 140 -317 856 148 26 26 chr11 40559882 40560071 -110223482 + MER53 DNA DNA 1 189 0 379 228 130 118 chr11 40560071 40560266 -110223287 + LTR16A1 LTR ERVL 140 342 -115 797 132 0 0 chr11 40560266 40560387 -110223166 - MLT2B1 LTR ERVL 0 520 400 415 200 70 43 chr11 40560374 40560489 -110223064 + LTR16A1 LTR ERVL 340 457 0 * 329 288 52 44 chr11 40560489 40560718 -110222835 + HERV16 LTR ERVL 1 231 -4765 24 0 0 0 chr11 40561780 40561804 -110221749 + AT_rich Low_complexity Low_complexity 1 24 0 650 333 122 23 chr11 40562326 40562671 -110220882 - L3 LINE CR1 -12 1565 1187 704 223 59 9 chr11 40564162 40564382 -110219171 - L1M4 LINE L1 -2263 3883 3653 1765 169 52 27 chr11 40564382 40564748 -110218805 + THE1C LTR MaLR 1 375 0 4462 234 38 4 chr11 40564751 40565783 -110217770 + THE1C-int LTR MaLR 5 1071 -580 359 80 0 0 chr11 40565965 40566015 -110217538 + MLT2A2 LTR ERVL 404 453 0 3912 112 50 10 chr11 40566560 40567179 -110216374 + LTR9B LTR ERV1 1 644 0 22 56 0 0 chr11 40567444 40567480 -110216073 + AT_rich Low_complexity Low_complexity 1 36 0 367 153 102 0 chr11 40567868 40567966 -110215587 + L1MD3 LINE L1 6992 7099 -896 325 256 47 0 chr11 40568027 40568113 -110215440 + MLT1F1 LTR MaLR 36 125 -442 394 148 49 0 chr11 40568113 40568194 -110215359 + L1MD3 LINE L1 7404 7488 -507 218 366 73 30 chr11 40569593 40569757 -110213796 + L2 LINE L2 3009 3179 -93 517 162 18 9 chr11 40570017 40570128 -110213425 - L1PA16 LINE L1 -1 6165 6054 1227 211 172 109 chr11 40570135 40570860 -110212693 + LTR28 LTR ERV1 1 967 -53 396 256 8 40 chr11 40570900 40571025 -110212528 + LTR28 LTR ERV1 900 1020 0 1598 180 12 19 chr11 40571027 40571349 -110212204 - L1PA16 LINE L1 -110 6056 5737 798 224 55 15 chr11 40571469 40571670 -110211883 - MER49 LTR ERV1 -714 209 1 250 81 0 0 chr11 40571671 40571708 -110211845 - MER39 LTR ERV1 -292 415 379 * 347 115 213 0 chr11 40571706 40571767 -110211786 - MER39B LTR ERV1 -579 74 1 200 35 35 0 chr11 40572079 40572108 -110211445 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1737 149 14 3 chr11 40575378 40575666 -110207887 + AluSx SINE Alu 1 291 -21 28 102 0 0 chr11 40575838 40575936 -110207617 + AT_rich Low_complexity Low_complexity 1 98 0 21 36 0 0 chr11 40576073 40576101 -110207452 + AT_rich Low_complexity Low_complexity 1 28 0 312 127 0 0 chr11 40576121 40576176 -110207377 + (TA)n Simple_repeat Simple_repeat 2 56 0 547 85 0 0 chr11 40576285 40576367 -110207186 + THE1B-int LTR MaLR 1499 1580 0 2081 138 51 28 chr11 40576367 40576723 -110206830 + THE1B LTR MaLR 1 364 0 1907 214 30 14 chr11 40577230 40577668 -110205885 + MLT1B-int LTR MaLR 900 1696 -39 1089 222 43 0 chr11 40577775 40578032 -110205521 - L1 LINE L1 -2217 3929 3662 * 5288 118 22 0 chr11 40578028 40578793 -110204760 - THE1B-int LTR MaLR -798 782 1 879 184 46 83 chr11 40578793 40578867 -110204686 - THE1B LTR MaLR 0 364 289 1818 151 0 0 chr11 40578867 40579145 -110204408 + AluSg SINE Alu 33 310 0 879 184 46 83 chr11 40579145 40579287 -110204266 - THE1B LTR MaLR -75 289 156 1677 163 9 16 chr11 40579387 40579707 -110203846 + MER31A LTR ERV1 168 485 0 3019 230 37 32 chr11 40579707 40581158 -110202395 - L1MC/D LINE L1 -521 5812 4346 662 133 49 28 chr11 40581186 40581329 -110202224 + MLT1B LTR MaLR 54 199 -191 4324 219 11 26 chr11 40581440 40581846 -110201707 + L1M4c LINE L1 25 435 -5949 879 273 77 20 chr11 40581846 40582355 -110201198 - MER34 LTR ERV1 0 542 5 4324 219 11 26 chr11 40582355 40582924 -110200629 + L1M4c LINE L1 435 986 -5398 22 35 0 0 chr11 40583412 40583441 -110200112 + AT_rich Low_complexity Low_complexity 1 29 0 32 0 0 0 chr11 40584518 40584550 -110199003 + AT_rich Low_complexity Low_complexity 1 32 0 5869 98 27 2 chr11 40584680 40585678 -110197875 + L1PA11 LINE L1 5156 6173 -1 329 93 19 0 chr11 40585999 40586053 -110197500 + (TG)n Simple_repeat Simple_repeat 2 56 0 879 124 14 14 chr11 40586286 40586466 -110197087 + AluSg/x SINE Alu 154 312 0 705 162 14 28 chr11 40586473 40586615 -110196938 + FLAM_C SINE Alu 1 140 -3 399 254 99 16 chr11 40586616 40586827 -110196726 + L1ME2 LINE L1 5203 5429 -743 2873 130 60 0 chr11 40586863 40587333 -110196220 - MER75 DNA T2_type -16 498 1 1934 228 80 49 chr11 40587340 40588019 -110195534 + L1ME2 LINE L1 5443 6142 -22 533 213 44 44 chr11 40588557 40588669 -110194884 + AluJo SINE Alu 1 115 -197 2134 123 118 18 chr11 40588669 40589034 -110194519 + MSTA LTR MaLR 1 409 -19 3280 200 19 77 chr11 40589034 40590063 -110193490 - LTR5 LTR ERVK 0 969 1 2134 123 118 18 chr11 40590063 40590086 -110193467 + MSTA LTR MaLR 409 428 0 533 213 44 44 chr11 40590086 40590109 -110193444 + AluJo SINE Alu 114 136 -176 773 228 0 0 chr11 40590120 40590278 -110193275 + AluJo SINE Alu 141 298 -4 1812 168 48 20 chr11 40590503 40590664 -110192889 + THE1B LTR MaLR 3 158 -206 3033 50 0 0 chr11 40590664 40591042 -110192511 - L1PA5 LINE L1 -4 6150 5773 1812 168 48 20 chr11 40591042 40591232 -110192321 + THE1B LTR MaLR 158 364 0 457 295 69 20 chr11 40591444 40591834 -110191719 - L1M4 LINE L1 -2827 3319 2911 23 0 0 0 chr11 40593446 40593469 -110190084 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr11 40593736 40593782 -110189771 + AT_rich Low_complexity Low_complexity 1 46 0 223 337 51 10 chr11 40593888 40593986 -110189567 + MIR SINE MIR 31 132 -130 23 33 0 0 chr11 40594758 40594788 -110188765 + AT_rich Low_complexity Low_complexity 1 30 0 298 302 47 47 chr11 40596024 40596216 -110187337 - MIR SINE MIR -2 260 69 27 73 0 0 chr11 40596252 40596307 -110187246 + AT_rich Low_complexity Low_complexity 1 55 0 198 0 0 0 chr11 40596456 40596478 -110187075 + (GGGAGA)n Simple_repeat Simple_repeat 3 24 0 453 294 27 10 chr11 40597455 40597745 -110185808 + L1M4b LINE L1 1331 1757 -5190 858 249 67 45 chr11 40597764 40597938 -110185615 - L1M4 LINE L1 -2828 3318 3149 1849 188 81 2 chr11 40597938 40598331 -110185222 + MSTA LTR MaLR 1 424 -4 858 249 67 45 chr11 40598331 40598820 -110184733 - L1M4 LINE L1 -2997 3149 2584 21 0 0 0 chr11 40598867 40598888 -110184665 + AT_rich Low_complexity Low_complexity 1 21 0 434 295 72 34 chr11 40598983 40599369 -110184184 + L1M4b LINE L1 1988 2388 -4750 561 202 0 9 chr11 40599385 40599494 -110184059 - FRAM SINE Alu -25 151 44 1572 251 106 22 chr11 40599650 40600101 -110183452 - MLT1F1 LTR MaLR -78 489 1 365 36 0 55 chr11 40601162 40601217 -110182336 + LTR14A LTR ERVK 1 52 -292 691 160 7 62 chr11 40601333 40601477 -110182076 + AluJo SINE Alu 1 136 -176 223 186 39 49 chr11 40601491 40601593 -110181960 + (TATATG)n Simple_repeat Simple_repeat 4 104 0 238 253 0 38 chr11 40604270 40604349 -110179204 + L1ME LINE L1 42 117 -5953 278 288 198 12 chr11 40604469 40604765 -110178788 + L1MB3 LINE L1 5274 5625 -545 839 201 24 6 chr11 40605148 40605317 -110178236 - MER5B DNA MER1_type -1 177 6 1226 273 25 66 chr11 40605411 40605853 -110177700 - MLT1D LTR MaLR -9 496 76 2055 147 0 6 chr11 40605853 40606167 -110177386 + AluSx SINE Alu 1 312 0 1226 273 25 66 chr11 40606167 40606241 -110177312 - MLT1D LTR MaLR -429 76 1 2530 57 0 16 chr11 40606762 40607078 -110176475 + AluY SINE Alu 1 311 0 22 56 0 0 chr11 40607396 40607432 -110176121 + AT_rich Low_complexity Low_complexity 1 36 0 331 296 23 15 chr11 40608475 40608607 -110174946 + MER94 DNA DNA 2 134 0 271 204 17 0 chr11 40609195 40609261 -110174292 + L1MB3 LINE L1 5716 5779 -387 18762 203 32 15 chr11 40609270 40615002 -110168551 + L1PA13 LINE L1 1 5983 -831 2812 7 0 0 chr11 40615002 40615311 -110168242 + AluYa5 SINE Alu 1 309 -2 18762 203 32 15 chr11 40615311 40616158 -110167395 + L1PA13 LINE L1 5983 6814 0 891 126 13 0 chr11 40616151 40616302 -110167251 + L1MB3 LINE L1 5769 5921 -262 * 213 313 36 68 chr11 40616755 40616947 -110166606 - L2 LINE L2 -33 3280 3095 188 299 21 31 chr11 40617327 40617424 -110166129 - MIR3 SINE MIR -3 205 110 291 316 177 6 chr11 40619093 40619251 -110164302 + L3 LINE CR1 1308 1492 -85 439 288 36 45 chr11 40619660 40619882 -110163671 + MIR SINE MIR 43 262 0 25 31 0 0 chr11 40620639 40620671 -110162882 + AT_rich Low_complexity Low_complexity 1 32 0 1934 128 3 3 chr11 40621280 40621595 -110161958 - AluSx SINE Alu 0 315 1 201 74 0 0 chr11 40621776 40621803 -110161750 + (TATG)n Simple_repeat Simple_repeat 4 30 0 22 0 0 0 chr11 40622435 40622457 -110161096 + AT_rich Low_complexity Low_complexity 1 22 0 246 323 182 27 chr11 40622612 40622832 -110160721 - L2 LINE L2 0 3272 3019 1406 218 3 7 chr11 40622866 40623150 -110160403 + AluJb SINE Alu 1 283 -29 216 97 0 0 chr11 40623166 40623197 -110160356 + (TA)n Simple_repeat Simple_repeat 2 32 0 232 312 37 28 chr11 40623301 40623410 -110160143 - L2 LINE L2 -90 3223 3114 1286 116 0 32 chr11 40623475 40623665 -110159888 + AluSx SINE Alu 1 184 -128 232 264 81 0 chr11 40623726 40623813 -110159740 + LTR37A LTR ERV1 51 144 -282 2469 223 31 50 chr11 40623827 40624671 -110158882 + L1 LINE L1 2621 3448 -2698 1504 115 0 5 chr11 40624676 40624885 -110158668 + AluSx SINE Alu 23 230 -82 1089 324 101 38 chr11 40624886 40625748 -110157805 - L2 LINE L2 -534 2780 1813 2396 87 0 0 chr11 40625748 40626059 -110157494 + AluY SINE Alu 1 311 0 1089 324 101 38 chr11 40626059 40626346 -110157207 - L2 LINE L2 -1501 1813 1546 642 327 140 24 chr11 40626371 40626827 -110156726 - L2 LINE L2 -2576 738 230 984 170 53 11 chr11 40626977 40627165 -110156388 - L1PB4 LINE L1 0 6156 5961 3676 61 20 57 chr11 40627213 40627600 -110155953 - L1PA7 LINE L1 0 6154 5791 2385 97 0 0 chr11 40627600 40627911 -110155642 - AluY SINE Alu 0 311 1 3676 61 20 57 chr11 40627911 40628067 -110155486 - L1PA7 LINE L1 -363 5791 5631 1315 243 91 19 chr11 40628447 40628875 -110154678 + MLT1C LTR MaLR 9 467 0 22 56 0 19 chr11 40630449 40630491 -110153062 + AT_rich Low_complexity Low_complexity 1 43 -10 932 168 0 29 chr11 40630491 40630661 -110152892 - L1MA3 LINE L1 -1 6304 6140 1505 190 32 32 chr11 40630661 40630971 -110152582 - AluJb SINE Alu -2 310 1 932 168 0 29 chr11 40630971 40631008 -110152545 - L1MA3 LINE L1 -165 6140 6103 22 56 0 19 chr11 40631008 40631019 -110152534 + AT_rich Low_complexity Low_complexity 43 53 0 189 368 61 0 chr11 40631025 40631139 -110152414 - L2 LINE L2 -1 3312 3192 557 66 0 0 chr11 40631445 40631521 -110152032 + AluSc SINE Alu 218 293 -16 1672 188 3 14 chr11 40631789 40632081 -110151472 + AluJb SINE Alu 1 289 -23 312 305 61 70 chr11 40632358 40632702 -110150851 + L1M4 LINE L1 2280 2620 -3526 1232 234 66 46 chr11 40632750 40633297 -110150256 - L1MEc LINE L1 -5324 1072 515 240 250 92 0 chr11 40633301 40633377 -110150176 - L1MEc LINE L1 -5855 541 459 605 313 4 30 chr11 40633405 40633638 -110149915 - L1MEc LINE L1 -6127 269 43 3029 274 123 8 chr11 40633782 40635013 -110148540 - L1MC4 LINE L1 -174 7868 6496 408 182 0 25 chr11 40635028 40635149 -110148404 + (TA)n Simple_repeat Simple_repeat 2 119 0 236 246 0 16 chr11 40635605 40635666 -110147887 + GA-rich Low_complexity Low_complexity 4 63 0 2929 164 33 74 chr11 40637145 40637864 -110145689 - LTR8 LTR ERV1 -1 690 1 803 223 47 56 chr11 40639347 40639562 -110143991 + MER58A DNA MER1_type 6 218 -6 224 227 50 17 chr11 40640636 40640755 -110142798 + (TA)n Simple_repeat Simple_repeat 2 124 0 634 182 9 0 chr11 40640760 40640870 -110142683 + AluJo SINE Alu 124 234 -78 460 343 15 15 chr11 40641426 40641630 -110141923 - MIR SINE MIR 0 262 59 22 0 0 0 chr11 40641758 40641780 -110141773 + AT_rich Low_complexity Low_complexity 1 22 0 1997 143 32 19 chr11 40642040 40642410 -110141143 - THE1C LTR MaLR 0 375 1 1364 249 100 36 chr11 40643524 40643993 -110139560 + LTR40a LTR ERVL 1 499 -20 25 0 0 0 chr11 40643995 40644020 -110139533 + AT_rich Low_complexity Low_complexity 1 25 0 457 232 81 20 chr11 40644203 40644401 -110139152 - L1ME4a LINE L1 -224 5897 5688 1003 96 32 6 chr11 40645853 40646009 -110137544 - L1PA13 LINE L1 0 6163 6004 4075 140 19 7 chr11 40646009 40646682 -110136871 + MER50 LTR ERV1 3 683 -51 4275 152 10 48 chr11 40646690 40647390 -110136163 - L1PA12 LINE L1 -156 6009 5325 276 70 0 0 chr11 40647390 40647433 -110136120 - AluSp/q SINE Alu -4 299 257 4275 152 10 48 chr11 40647433 40647826 -110135727 - L1PA12 LINE L1 -840 5325 4918 228 229 209 38 chr11 40647826 40647931 -110135622 - MER67D LTR ERV1 -15 499 377 194 125 0 25 chr11 40647933 40647973 -110135580 + (TTTCC)n Simple_repeat Simple_repeat 2 40 0 1194 216 24 76 chr11 40648082 40648410 -110135143 - MER67D LTR ERV1 -203 311 1 2318 50 0 7 chr11 40649220 40649499 -110134054 - AluY SINE Alu -22 289 13 24 67 0 0 chr11 40649686 40649731 -110133822 + AT_rich Low_complexity Low_complexity 1 45 0 26 50 0 0 chr11 40649741 40649781 -110133772 + AT_rich Low_complexity Low_complexity 1 40 0 234 289 0 26 chr11 40651273 40651349 -110132204 + (TATG)n Simple_repeat Simple_repeat 3 76 0 239 186 0 0 chr11 40651595 40651638 -110131915 - MER67C LTR ERV1 -435 275 233 24 0 0 0 chr11 40653307 40653331 -110130222 + AT_rich Low_complexity Low_complexity 1 24 0 5963 36 1 1 chr11 40653732 40654453 -110129100 - L1PA4 LINE L1 -6 6149 5429 25 0 0 0 chr11 40654834 40654859 -110128694 + AT_rich Low_complexity Low_complexity 1 25 0 964 348 112 16 chr11 40654987 40655825 -110127728 + L2 LINE L2 416 1334 -1980 311 276 32 32 chr11 40655947 40656070 -110127483 - L1M4 LINE L1 -1962 4184 4062 312 316 12 42 chr11 40656585 40656753 -110126800 - MLT2E LTR ERVL -419 209 47 487 332 38 21 chr11 40657247 40657485 -110126068 - ERVL LTR ERVL -515 5249 5008 2185 305 102 24 chr11 40657541 40658174 -110125379 - ERVL LTR ERVL -923 4841 4096 2061 128 3 3 chr11 40658174 40658480 -110125073 + AluSc SINE Alu 1 306 -3 2185 305 102 24 chr11 40658480 40658880 -110124673 - ERVL LTR ERVL -1668 4096 3728 4146 174 52 38 chr11 40658928 40659830 -110123723 - L1MA7 LINE L1 -2 6289 5375 5468 251 35 59 chr11 40659834 40661670 -110121883 - L1M4 LINE L1 -1924 5641 3763 1552 111 4 4 chr11 40661670 40661896 -110121657 - AluSg/x SINE Alu -7 305 80 5468 251 35 59 chr11 40661896 40662335 -110121218 - L1M4 LINE L1 -3802 3763 3441 2436 75 3 0 chr11 40662335 40662642 -110120911 - AluY SINE Alu -2 309 2 5468 251 35 59 chr11 40662642 40662988 -110120565 - L1M4 LINE L1 -4124 3441 3088 1319 318 103 56 chr11 40663037 40664084 -110119469 - ERVL LTR ERVL -2293 3192 2097 858 314 57 63 chr11 40664087 40664736 -110118817 - ERVL LTR ERVL -3891 1873 1229 23 0 0 0 chr11 40664978 40665001 -110118552 + AT_rich Low_complexity Low_complexity 1 23 0 258 347 17 23 chr11 40665661 40665837 -110117716 - L1MC/D LINE L1 -2260 5548 5374 195 69 0 0 chr11 40665858 40665887 -110117666 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2515 133 16 23 chr11 40667421 40667858 -110115695 - L1M2 LINE L1 -481 5819 5386 1955 179 21 23 chr11 40667860 40668297 -110115256 + L1MA8 LINE L1 5853 6288 -3 2749 10 0 3 chr11 40668575 40668887 -110114666 + AluYa5 SINE Alu 1 311 0 309 244 25 17 chr11 40669128 40669247 -110114306 + CT-rich Low_complexity Low_complexity 1 120 0 288 190 6 34 chr11 40669370 40669727 -110113826 + (TA)n Simple_repeat Simple_repeat 1 346 0 405 201 40 23 chr11 40669741 40669915 -110113638 + (TA)n Simple_repeat Simple_repeat 2 178 0 225 0 0 0 chr11 40669918 40669943 -110113610 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr11 40670994 40671023 -110112530 + AT_rich Low_complexity Low_complexity 1 29 0 551 352 90 39 chr11 40671159 40671763 -110111790 + L2 LINE L2 2679 3312 -1 404 382 145 27 chr11 40672700 40673705 -110109848 + L2 LINE L2 310 1433 -1881 22 35 0 0 chr11 40673941 40673970 -110109583 + AT_rich Low_complexity Low_complexity 1 29 0 486 274 57 28 chr11 40674890 40675102 -110108451 - MER20 DNA MER1_type 0 219 2 2143 102 10 0 chr11 40675397 40675701 -110107852 - AluSp SINE Alu -2 311 5 23 0 0 0 chr11 40675977 40676000 -110107553 + AT_rich Low_complexity Low_complexity 1 23 0 308 318 111 8 chr11 40676386 40676512 -110107041 - L2 LINE L2 -2 3311 3173 1392 205 3 30 chr11 40679027 40679329 -110104224 + AluJo SINE Alu 1 294 -18 996 181 0 82 chr11 40679802 40679914 -110103639 + AluJo SINE Alu 75 195 -136 4086 161 70 58 chr11 40679914 40680973 -110102580 + MER11C LTR ERVK 1 1071 0 996 181 0 82 chr11 40680973 40681136 -110102417 + AluJo SINE Alu 195 331 0 1863 154 0 3 chr11 40681376 40681662 -110101891 - AluSx SINE Alu -27 285 1 21 0 0 0 chr11 40681857 40681878 -110101675 + AT_rich Low_complexity Low_complexity 1 21 0 180 377 48 54 chr11 40682330 40682497 -110101056 + MIR SINE MIR 19 184 -78 25 51 0 0 chr11 40682567 40682606 -110100947 + AT_rich Low_complexity Low_complexity 1 39 0 33 100 0 0 chr11 40682743 40682853 -110100700 + AT_rich Low_complexity Low_complexity 1 110 0 555 164 12 6 chr11 40682860 40683110 -110100443 + AluJ SINE Alu 1 312 0 22 70 0 0 chr11 40683113 40683156 -110100397 + AT_rich Low_complexity Low_complexity 1 43 0 323 318 71 35 chr11 40683390 40683588 -110099965 - L1ME LINE L1 -409 5712 5508 333 353 97 35 chr11 40683836 40684094 -110099459 + HAL1 LINE L1 450 723 -1784 487 291 204 18 chr11 40684290 40684678 -110098875 - LTR50 LTR ERVL -106 689 230 307 314 53 35 chr11 40684809 40684978 -110098575 + HAL1 LINE L1 872 1043 -1464 911 87 0 0 chr11 40684982 40685109 -110098444 + AluY SINE Alu 184 310 -1 323 353 50 7 chr11 40685727 40685866 -110097687 + MIR3 SINE MIR 48 192 -16 203 143 0 24 chr11 40686532 40686574 -110096979 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 2023 170 13 16 chr11 40687398 40687774 -110095779 - THE1C LTR MaLR 0 375 1 9059 138 47 5 chr11 40687774 40689290 -110094263 - THE1C-int LTR MaLR 0 1580 1 1292 169 93 65 chr11 40689290 40689644 -110093909 - THE1C LTR MaLR 0 364 1 1123 211 24 16 chr11 40689646 40689893 -110093660 + AluJb SINE Alu 5 253 -59 312 108 14 27 chr11 40689893 40689967 -110093586 + (TA)n Simple_repeat Simple_repeat 1 73 0 24 32 0 0 chr11 40690040 40690071 -110093482 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr11 40690558 40690584 -110092969 + AT_rich Low_complexity Low_complexity 1 26 0 227 298 0 0 chr11 40693940 40694025 -110089528 + (TGGA)n Simple_repeat Simple_repeat 1 85 0 231 156 89 0 chr11 40694447 40694492 -110089061 - MIR SINE MIR -49 213 165 322 320 92 98 chr11 40694668 40695005 -110088548 - L1ME3A LINE L1 0 6588 6254 826 322 27 24 chr11 40695058 40695630 -110087923 - L1ME3A LINE L1 -464 6124 5544 253 261 61 33 chr11 40695962 40696142 -110087411 - L1ME3A LINE L1 -3528 3036 2852 329 328 0 16 chr11 40697471 40697599 -110085954 + MLT1I LTR MaLR 284 409 0 3240 255 34 43 chr11 40697851 40699023 -110084530 - L1ME3A LINE L1 -4882 1163 3 266 227 55 45 chr11 40699793 40699903 -110083650 - MER3 DNA MER1_type -5 204 94 324 83 0 0 chr11 40700067 40700115 -110083438 + (CA)n Simple_repeat Simple_repeat 1 48 0 265 180 0 0 chr11 40700179 40700217 -110083336 - MSTB2 LTR MaLR 0 428 388 1646 160 72 39 chr11 40700217 40700580 -110082973 + THE1C LTR MaLR 1 375 0 265 180 0 0 chr11 40700580 40700591 -110082962 - MSTB2 LTR MaLR -39 389 379 5348 160 21 49 chr11 40700591 40701617 -110081936 + THE1C-int LTR MaLR 12 1009 -571 3794 69 0 243 chr11 40701620 40702529 -110081024 + LTR12 LTR ERV1 1 688 0 20094 103 22 8 chr11 40702529 40705462 -110078091 + HERV9 LTR ERV1 1 2972 -5427 1298 140 23 5 chr11 40705461 40705682 -110077871 + HERV9 LTR ERV1 4756 4980 -3419 * 2054 115 11 17 chr11 40705688 40706035 -110077518 + HERV17 LTR ERV1 703 1047 -7579 1932 103 2 16 chr11 40706024 40706449 -110077104 + HERV17 LTR ERV1 1275 1740 -5156 * 5706 92 5 0 chr11 40706446 40707217 -110076336 + HERV17 LTR ERV1 7625 8399 0 1505 59 106 94 chr11 40707217 40707473 -110076080 + LTR12 LTR ERV1 1 259 -455 342 265 8 0 chr11 40707473 40707590 -110075963 + LTR30 LTR ERV1 526 643 -79 1649 141 3 63 chr11 40707590 40708103 -110075450 + LTR12 LTR ERV1 480 714 0 3338 112 55 22 chr11 40708106 40708649 -110074904 + THE1C-int LTR MaLR 1014 1574 -6 1721 166 46 25 chr11 40708654 40709021 -110074532 + THE1C LTR MaLR 1 375 0 317 22 0 44 chr11 40709021 40709060 -110074493 - MSTB2 LTR MaLR -34 423 387 * 831 153 83 19 chr11 40709059 40709216 -110074337 - THE1C LTR MaLR -208 167 1 23 0 0 0 chr11 40709591 40709614 -110073939 + AT_rich Low_complexity Low_complexity 1 23 0 1826 174 0 0 chr11 40709688 40709975 -110073578 + AluJb SINE Alu 3 289 -23 280 292 22 0 chr11 40711006 40711095 -110072458 + GA-rich Low_complexity Low_complexity 3 93 0 264 212 12 24 chr11 40712626 40712711 -110070842 + (TA)n Simple_repeat Simple_repeat 2 85 0 310 294 24 0 chr11 40713540 40713625 -110069928 + MLT1F1 LTR MaLR 1 87 -480 981 197 26 18 chr11 40713875 40714103 -110069450 + L1MB2 LINE L1 5869 6098 -73 2004 195 114 120 chr11 40714105 40715029 -110068524 - LTR28 LTR ERV1 0 1020 1 446 133 0 0 chr11 40715035 40715110 -110068443 + L1MB2 LINE L1 6095 6169 -2 253 301 96 0 chr11 40715248 40715331 -110068222 - MIR3 SINE MIR -5 203 113 310 279 13 0 chr11 40717487 40717566 -110065987 - L2 LINE L2 0 3313 3234 314 215 81 96 chr11 40717648 40717857 -110065696 + HAL1b LINE L1 553 758 -590 314 239 44 18 chr11 40718029 40718142 -110065411 + HAL1b LINE L1 1042 1157 -191 189 74 0 0 chr11 40718190 40718217 -110065336 + (TATG)n Simple_repeat Simple_repeat 2 28 0 185 313 0 0 chr11 40718325 40718373 -110065180 - L2 LINE L2 -2063 1251 1204 1881 193 38 36 chr11 40718378 40718621 -110064932 - MSTB LTR MaLR -5 421 175 4793 9 0 0 chr11 40718621 40719163 -110064390 - L1PA2 LINE L1 0 6155 5614 1881 193 38 36 chr11 40719163 40719338 -110064215 - MSTB LTR MaLR -251 175 2 240 297 0 0 chr11 40719917 40719981 -110063572 - MIR SINE MIR -102 160 97 509 249 203 5 chr11 40720660 40720877 -110062676 - MIR SINE MIR -1 261 2 272 266 52 71 chr11 40720887 40721041 -110062512 - MIR SINE MIR -44 218 68 22 56 0 0 chr11 40722023 40722059 -110061494 + AT_rich Low_complexity Low_complexity 1 36 0 301 189 22 22 chr11 40722540 40722630 -110060923 + L1MA10 LINE L1 6244 6333 -1 1920 136 0 20 chr11 40722982 40723276 -110060277 + AluSx SINE Alu 1 288 -24 221 339 74 8 chr11 40723335 40723456 -110060097 - MIR SINE MIR -73 189 61 6835 113 8 3 chr11 40723465 40725323 -110058230 + L1PA8 LINE L1 4306 6172 0 2109 116 3 16 chr11 40725801 40726111 -110057442 + AluSq SINE Alu 1 306 -7 205 156 0 0 chr11 40726214 40726246 -110057307 + (CA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr11 40726477 40726498 -110057055 + AT_rich Low_complexity Low_complexity 1 21 0 326 189 0 0 chr11 40726796 40726849 -110056704 + MER94 DNA DNA 1 53 -81 1345 330 27 34 chr11 40727130 40727693 -110055860 + L1M3c LINE L1 230 788 -5569 814 301 45 21 chr11 40727886 40728268 -110055285 + L1M3c LINE L1 1060 1450 -4907 1051 145 30 0 chr11 40728274 40728440 -110055113 + AluSg/x SINE Alu 135 305 -7 1068 233 33 42 chr11 40728440 40728844 -110054709 + L1MA10 LINE L1 1174 1829 -4528 * 3900 203 38 77 chr11 40728831 40731748 -110051805 + L1MA10 LINE L1 3963 6611 -3 1252 271 60 53 chr11 40732874 40734063 -110049490 + L1MEc LINE L1 1414 2586 -3629 793 150 20 13 chr11 40734056 40734209 -110049344 + L1MC3 LINE L1 6539 6692 -1093 * 1294 164 29 4 chr11 40734256 40734500 -110049053 - L1PA16 LINE L1 -29 6137 5888 4153 234 33 15 chr11 40734628 40737724 -110045829 - L1PA16 LINE L1 -237 7367 3118 308 264 35 0 chr11 40737791 40737878 -110045675 + L1MC4 LINE L1 6614 6703 -1339 297 0 0 0 chr11 40737909 40737942 -110045611 + (TG)n Simple_repeat Simple_repeat 2 34 0 2129 262 27 56 chr11 40737960 40738726 -110044827 - L1PA16 LINE L1 -4510 3071 2330 2017 116 7 14 chr11 40738726 40739019 -110044534 - AluSq SINE Alu -22 291 1 2129 262 27 56 chr11 40739019 40739092 -110044461 - L1PA16 LINE L1 -5251 2330 2256 355 333 10 14 chr11 40739404 40739616 -110043937 - L1PA16 LINE L1 -5276 2298 2083 845 354 57 38 chr11 40739629 40740228 -110043325 - L1PA16 LINE L1 -6177 1397 788 3048 222 65 25 chr11 40740235 40741046 -110042507 + L1MC3 LINE L1 6717 7560 -225 238 296 23 0 chr11 40741100 40741188 -110042365 + L1MC4 LINE L1 6614 6703 -1339 248 232 107 9 chr11 40741200 40741312 -110042241 + L1MC3 LINE L1 7576 7698 -87 337 248 0 73 chr11 40741747 40741762 -110041791 + L1ME3A LINE L1 5998 6013 -157 1992 164 48 26 chr11 40741762 40742177 -110041376 + MSTA LTR MaLR 3 426 -2 337 248 0 73 chr11 40742177 40742298 -110041255 + L1ME3A LINE L1 6013 6124 -46 1443 281 70 51 chr11 40742400 40743112 -110040441 - L1MC4a LINE L1 0 7808 7083 2216 158 14 59 chr11 40743137 40743816 -110039737 + L1MA4A LINE L1 4873 5524 -743 2728 159 66 24 chr11 40743822 40743909 -110039644 + L1MA4A LINE L1 5699 5781 -522 351 0 0 0 chr11 40743909 40743948 -110039605 + (CA)n Simple_repeat Simple_repeat 2 40 0 2728 159 66 24 chr11 40743948 40744439 -110039114 + L1MA4A LINE L1 5781 6301 -2 322 21 43 0 chr11 40745697 40745744 -110037809 + (TAAAA)n Simple_repeat Simple_repeat 4 52 0 242 282 115 0 chr11 40747476 40747554 -110035999 + MIR SINE MIR 67 153 -55 256 261 67 92 chr11 40747576 40747653 -110035900 + MIR3 SINE MIR 67 141 -67 1562 189 39 0 chr11 40747653 40747938 -110035615 + AluJb SINE Alu 1 296 -16 256 261 67 92 chr11 40747938 40747979 -110035574 + MIR3 SINE MIR 141 182 -26 852 147 71 43 chr11 40748995 40749179 -110034374 + MLT1B LTR MaLR 1 189 -201 369 75 0 0 chr11 40749179 40749232 -110034321 + (TC)n Simple_repeat Simple_repeat 2 54 0 841 236 15 10 chr11 40749238 40749441 -110034112 + MLT1B LTR MaLR 187 390 0 330 359 101 30 chr11 40749465 40749891 -110033662 + L2 LINE L2 2853 3308 -5 2341 151 59 2 chr11 40750361 40750766 -110032787 + MSTA LTR MaLR 1 428 0 900 257 5 10 chr11 40751396 40751602 -110031951 - MIR SINE MIR -56 206 2 4653 224 48 14 chr11 40751711 40752927 -110030626 + L1MC3 LINE L1 6509 7765 -20 208 103 0 51 chr11 40753065 40753104 -110030449 + (CAAAAA)n Simple_repeat Simple_repeat 1 37 0 5295 142 12 11 chr11 40753876 40754941 -110028612 + L1PB4 LINE L1 4977 6181 -118 20221 63 8 1 chr11 40754941 40758401 -110025152 - L1PA6 LINE L1 -3 6151 2674 5295 142 12 11 chr11 40758401 40758518 -110025035 + L1PB4 LINE L1 6181 6296 -3 494 288 62 25 chr11 40759011 40759171 -110024382 + MIR3 SINE MIR 38 203 -5 254 358 125 24 chr11 40759743 40760198 -110023355 + L2 LINE L2 2112 2612 -702 2087 113 7 13 chr11 40761092 40761401 -110022152 + AluSc SINE Alu 1 307 -2 1074 132 11 11 chr11 40761401 40761575 -110021978 + AluSg/x SINE Alu 132 305 -5 329 140 11 43 chr11 40761580 40761673 -110021880 + L1MA4A LINE L1 6214 6303 0 1761 207 101 14 chr11 40762791 40763207 -110020346 - L1MC/D LINE L1 -558 5775 5324 815 137 29 7 chr11 40763213 40763352 -110020201 - FRAM SINE Alu -4 172 31 2531 241 37 1 chr11 40763353 40764033 -110019520 - L1MC/D LINE L1 -816 5330 4627 30 59 0 0 chr11 40764223 40764274 -110019279 + AT_rich Low_complexity Low_complexity 1 51 0 199 243 0 0 chr11 40764388 40764425 -110019128 + MIR SINE MIR 79 115 -147 298 263 50 0 chr11 40764488 40764572 -110018981 - MIR SINE MIR -62 146 64 2184 72 6 62 chr11 40764730 40765051 -110018502 - AluY SINE Alu -8 303 1 1547 240 54 14 chr11 40765370 40765816 -110017737 + L1M4 LINE L1 3741 4204 -1942 194 194 16 0 chr11 40765844 40765906 -110017647 + (TA)n Simple_repeat Simple_repeat 2 64 0 312 260 0 42 chr11 40765920 40766016 -110017537 + L1MC4 LINE L1 6611 6702 -1340 521 171 0 0 chr11 40766030 40766112 -110017441 + Tigger3(Golem) DNA MER2_type 1 82 -2947 * 1044 150 0 6 chr11 40766110 40766283 -110017270 + Tigger3(Golem) DNA MER2_type 2722 2893 -136 620 246 97 121 chr11 40766284 40766895 -110016658 + LTR4 LTR ERV1 1 596 0 717 176 23 8 chr11 40766898 40767029 -110016524 + Tigger3(Golem) DNA MER2_type 2903 3035 0 1564 244 6 8 chr11 40767628 40767992 -110015561 + MLT1A1 LTR MaLR 1 363 -2 23 33 0 0 chr11 40768183 40768213 -110015340 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr11 40768282 40768307 -110015246 + AT_rich Low_complexity Low_complexity 1 25 0 65 43 0 0 chr11 40768372 40768465 -110015088 + AT_rich Low_complexity Low_complexity 1 93 0 1718 186 27 0 chr11 40768488 40768789 -110014764 + AluJb SINE Alu 1 309 -3 25 0 0 0 chr11 40769142 40769167 -110014386 + AT_rich Low_complexity Low_complexity 1 25 0 810 292 64 40 chr11 40769603 40769993 -110013560 - MLT1J2 LTR MaLR -27 423 50 300 222 22 0 chr11 40770190 40770280 -110013273 - L1M4 LINE L1 -1062 5084 4993 1370 97 66 0 chr11 40770294 40770522 -110013031 + L1P LINE L1 5057 5299 -847 * 13128 28 4 0 chr11 40770521 40772457 -110011096 + L1P1 LINE L1 3817 5760 -395 2091 55 0 0 chr11 40772557 40772813 -110010740 - AluY SINE Alu -55 256 1 4646 214 29 22 chr11 40772813 40774815 -110008738 + L1M3f LINE L1 384 2419 -3909 1239 39 13 0 chr11 40774815 40774971 -110008582 + L1PA6 LINE L1 5993 6150 -4 4646 214 29 22 chr11 40774971 40775864 -110007689 + L1M3f LINE L1 2419 3304 -3024 8402 32 8 1 chr11 40775964 40777746 -110005807 + L1PA3 LINE L1 4363 6149 -6 26 50 0 0 chr11 40779362 40779402 -110004151 + AT_rich Low_complexity Low_complexity 1 40 0 197 178 67 0 chr11 40779759 40779804 -110003749 + MIR SINE MIR 117 164 -98 2057 145 0 0 chr11 40779968 40780279 -110003274 + AluSx SINE Alu 1 311 -1 25 0 0 0 chr11 40780383 40780408 -110003145 + AT_rich Low_complexity Low_complexity 1 25 0 545 240 14 7 chr11 40780409 40780555 -110002998 + Charlie1a DNA MER1_type 50 196 -1259 477 148 167 9 chr11 40780555 40780663 -110002890 + L1M3f LINE L1 2 126 -5202 2205 112 0 0 chr11 40781682 40781976 -110001577 - AluSg SINE Alu -12 298 5 186 360 84 40 chr11 40782069 40782319 -110001234 - MIR SINE MIR -1 261 1 86 64 0 0 chr11 40782440 40782596 -110000957 + AT_rich Low_complexity Low_complexity 1 156 0 30 0 0 0 chr11 40782849 40782879 -110000674 + AT_rich Low_complexity Low_complexity 1 30 0 365 214 22 77 chr11 40783350 40783532 -110000021 + L1M4 LINE L1 4996 5167 -979 757 296 37 8 chr11 40783551 40783794 -109999759 + L1MB1 LINE L1 1 250 -6292 323 247 39 0 chr11 40783848 40783925 -109999628 + L1MB1 LINE L1 350 429 -6113 4982 260 102 35 chr11 40783929 40786856 -109996697 + L1MB1 LINE L1 3221 6355 -311 4495 131 20 57 chr11 40786958 40787602 -109995951 - L1PA14 LINE L1 -17 6144 5478 183 42 0 0 chr11 40787602 40787626 -109995927 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2042 97 4 0 chr11 40787626 40787904 -109995649 - AluSg SINE Alu -31 279 1 4495 131 20 57 chr11 40787904 40788088 -109995465 - L1PA14 LINE L1 -681 5480 5345 1469 246 31 18 chr11 40788091 40788547 -109995006 + L1P LINE L1 2902 3363 -2783 23 0 0 0 chr11 40788859 40788882 -109994671 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr11 40788951 40788980 -109994573 + AT_rich Low_complexity Low_complexity 1 29 0 4060 159 41 73 chr11 40789889 40791281 -109992272 + LTR12 LTR ERV1 5 714 0 902 242 56 50 chr11 40791369 40791753 -109991800 + MER67C LTR ERV1 1 403 -260 1025 260 136 13 chr11 40791917 40792463 -109991090 - MER114 LTR ERV 0 648 36 385 298 48 66 chr11 40792798 40793451 -109990102 + L1M4 LINE L1 1256 1982 -4843 253 268 78 70 chr11 40793556 40793698 -109989855 + L1M4 LINE L1 1842 2059 -4585 367 253 83 74 chr11 40793763 40793992 -109989561 + L1M4 LINE L1 2440 2670 -3974 342 125 0 0 chr11 40794169 40794217 -109989336 - MLT1A2 LTR MaLR 0 374 327 244 125 62 38 chr11 40794355 40794435 -109989118 + (TA)n Simple_repeat Simple_repeat 2 83 0 21 89 0 0 chr11 40794437 40794493 -109989060 + AT_rich Low_complexity Low_complexity 1 56 0 5190 53 6 21 chr11 40795066 40795410 -109988143 + L1PA7 LINE L1 5482 5813 -341 2344 102 0 0 chr11 40795410 40795715 -109987838 + AluSx SINE Alu 1 305 -7 5190 53 6 21 chr11 40795715 40796051 -109987502 + L1PA7 LINE L1 5813 6152 -2 1789 161 145 18 chr11 40796088 40796395 -109987158 + MSTA LTR MaLR 1 366 -62 1673 64 0 0 chr11 40796395 40796615 -109986938 + L1PA5 LINE L1 5934 6153 -1 1789 161 145 18 chr11 40796615 40796687 -109986866 + MSTA LTR MaLR 366 428 0 496 262 62 65 chr11 40796882 40797191 -109986362 - L1M4 LINE L1 -1746 4400 4093 23 54 0 0 chr11 40797230 40797267 -109986286 + AT_rich Low_complexity Low_complexity 1 37 0 2268 91 3 40 chr11 40797271 40797623 -109985930 - L1PA13 LINE L1 -11 6152 5814 1097 24 0 0 chr11 40797623 40797746 -109985807 - AluYa5/8 SINE Alu -20 291 169 11859 191 26 16 chr11 40797755 40800867 -109982686 - L1PA13 LINE L1 -345 5818 2679 1985 140 35 24 chr11 40802256 40802627 -109980926 + THE1C LTR MaLR 1 375 0 1976 163 126 8 chr11 40802669 40803050 -109980503 + MSTA LTR MaLR 1 426 -2 8162 157 24 39 chr11 40803054 40804655 -109978898 + MSTA-int LTR MaLR 3 1579 -1 1648 176 146 8 chr11 40804656 40805032 -109978521 + MSTA LTR MaLR 1 428 0 1904 109 10 34 chr11 40805525 40805800 -109977753 + AluY SINE Alu 21 290 -21 225 0 0 0 chr11 40805800 40805825 -109977728 + (TTAAA)n Simple_repeat Simple_repeat 2 26 0 1904 109 10 34 chr11 40805825 40805842 -109977711 + AluY SINE Alu 290 306 -5 273 294 16 16 chr11 40806369 40806556 -109976997 - L1M4 LINE L1 -2906 3240 3054 280 268 18 0 chr11 40806988 40807100 -109976453 + L1M1 LINE L1 2652 2765 -4800 * 1229 318 40 38 chr11 40807085 40807639 -109975914 + L1M3e LINE L1 505 1059 -6430 262 287 39 47 chr11 40807732 40807861 -109975692 + L1M3e LINE L1 2284 2411 -5078 956 143 13 0 chr11 40807961 40808115 -109975438 - L1MC/D LINE L1 -2087 5698 5543 287 231 64 0 chr11 40808125 40808203 -109975350 - L1M4 LINE L1 -1924 4222 4140 1937 149 65 9 chr11 40808213 40808386 -109975167 + MER1B DNA MER1_type 1 163 -2549 1688 164 63 36 chr11 40808386 40808751 -109974802 - THE1C LTR MaLR 0 375 1 1937 149 65 9 chr11 40808751 40808898 -109974655 + MER1B DNA MER1_type 163 339 0 1846 267 31 40 chr11 40808925 40809753 -109973800 - L1M4 LINE L1 -2078 4068 3248 247 191 0 0 chr11 40809979 40810021 -109973532 - MER110A LTR ERV1 -4 464 423 429 283 44 28 chr11 40810488 40810668 -109972885 - MLT1E3 LTR MaLR -393 231 49 203 235 0 39 chr11 40810878 40810929 -109972624 + CT-rich Low_complexity Low_complexity 4 52 0 21 0 0 0 chr11 40811976 40811997 -109971556 + AT_rich Low_complexity Low_complexity 1 21 0 24034 46 2 4 chr11 40812885 40815884 -109967669 + L1P LINE L1 1 2994 -3152 1310 114 15 0 chr11 40815984 40816186 -109967367 + L1PA10 LINE L1 5815 6019 -149 833 182 9 51 chr11 40816185 40816399 -109967154 + L1M3e LINE L1 3416 3620 -3945 * 1205 68 0 12 chr11 40816399 40816562 -109966991 + L1PA6 LINE L1 5991 6151 -3 996 107 7 0 chr11 40816572 40816722 -109966831 + L1PA8 LINE L1 6022 6172 0 1431 208 55 60 chr11 40816722 40817018 -109966535 + L1M3e LINE L1 4602 4895 -2670 2115 125 3 7 chr11 40817018 40817313 -109966240 + AluSx SINE Alu 1 294 -18 1431 208 55 60 chr11 40817313 40817545 -109966008 + L1M3e LINE L1 4895 5127 -2438 1404 226 83 16 chr11 40817545 40818049 -109965504 + Charlie1 DNA MER1_type 2223 2760 -1 591 266 70 33 chr11 40818735 40819006 -109964547 - L1ME2 LINE L1 -7 6157 5877 1174 293 36 4 chr11 40819012 40819462 -109964091 - L1ME2 LINE L1 -319 5845 5382 27 49 0 0 chr11 40819500 40819541 -109964012 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr11 40819601 40819630 -109963923 + AT_rich Low_complexity Low_complexity 1 29 0 273 281 209 22 chr11 40819630 40819908 -109963645 - L1ME2 LINE L1 -950 5196 4867 756 219 13 0 chr11 40819917 40820068 -109963485 + LTR69 LTR ERVL 1 153 -435 1988 133 7 7 chr11 40820764 40821065 -109962488 - AluSx SINE Alu -11 301 1 2236 113 0 3 chr11 40821574 40821947 -109961606 + AluSg SINE Alu 1 372 0 1961 193 6 53 chr11 40822336 40822803 -109960750 + MER65A LTR ERV1 1 445 0 294 316 51 6 chr11 40823514 40823680 -109959873 + L1ME LINE L1 5537 5704 -460 21 36 0 0 chr11 40823702 40823730 -109959823 + AT_rich Low_complexity Low_complexity 1 28 0 463 321 24 6 chr11 40826980 40827148 -109956405 - MIR SINE MIR -4 258 88 963 132 0 0 chr11 40827790 40827926 -109955627 - AluSq/x SINE Alu -175 138 3 1477 202 40 104 chr11 40828080 40828635 -109954918 + MLT2B1 LTR ERVL 1 519 -1 519 280 32 1 chr11 40828869 40829036 -109954517 - L1ME1 LINE L1 -1 6333 6003 494 250 104 42 chr11 40829043 40829235 -109954318 - MER46C DNA MER2_type -134 204 1 243 339 0 0 chr11 40829407 40829463 -109954090 + L2 LINE L2 3196 3251 -21 249 268 0 0 chr11 40829564 40829577 -109953976 + MER3 DNA MER1_type 35 47 -162 664 235 34 0 chr11 40829577 40829726 -109953827 - MER3 DNA MER1_type 0 209 56 307 319 65 22 chr11 40829885 40830023 -109953530 - MIR3 SINE MIR -62 146 3 1470 190 90 80 chr11 40830424 40830924 -109952629 - MLT1D LTR MaLR 0 505 1 1966 150 13 0 chr11 40831096 40831396 -109952157 + AluSp SINE Alu 1 304 -9 286 267 27 27 chr11 40831473 40831548 -109952005 - L2 LINE L2 -1 3312 3238 3210 137 22 2 chr11 40831578 40832073 -109951480 - LTR10B LTR ERV1 0 505 1 6806 275 31 25 chr11 40832073 40834139 -109949414 - LTR10B-int LTR ERV1 0 6649 4571 3726 216 38 27 chr11 40834247 40835127 -109948426 - HERVI LTR ERV1 -4890 1759 871 1774 262 40 35 chr11 40835156 40835760 -109947793 - HERVI LTR ERV1 -6662 1123 517 961 228 98 8 chr11 40835864 40836118 -109947435 - HERVI LTR ERV1 -6367 282 6 3187 124 24 16 chr11 40836120 40836621 -109946932 - LTR10B LTR ERV1 0 505 1 1765 229 39 8 chr11 40836721 40837205 -109946348 + L1MB7 LINE L1 5666 6164 -20 1165 170 30 0 chr11 40837466 40837696 -109945857 - L1P LINE L1 -4127 2019 1783 479 196 51 22 chr11 40838217 40838355 -109945198 - L1MEc LINE L1 -5230 1166 1025 1737 182 47 11 chr11 40838379 40838741 -109944812 - THE1C LTR MaLR 0 375 1 2198 137 6 11 chr11 40838741 40839098 -109944455 - THE1C-int LTR MaLR 0 1580 1226 363 250 50 10 chr11 40839098 40839198 -109944355 + MLT1I LTR MaLR 306 409 0 1063 43 0 14 chr11 40840224 40840364 -109943189 + L1PA5 LINE L1 6017 6154 0 23 0 0 0 chr11 40841887 40841910 -109941643 + AT_rich Low_complexity Low_complexity 1 23 0 185 385 13 0 chr11 40842033 40842111 -109941442 - MIR SINE MIR -66 142 64 227 329 35 0 chr11 40842521 40842606 -109940947 - MIR3 SINE MIR -45 163 76 191 161 18 0 chr11 40842765 40842821 -109940732 + (TA)n Simple_repeat Simple_repeat 2 58 0 192 312 0 0 chr11 40843456 40843549 -109940004 + (TA)n Simple_repeat Simple_repeat 2 94 0 233 210 16 0 chr11 40843695 40843757 -109939796 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 226 196 107 0 chr11 40843770 40843826 -109939727 + L1MC3 LINE L1 6583 6644 -1141 1508 205 27 56 chr11 40843892 40844268 -109939285 - MLT2D LTR ERVL -48 366 2 393 289 122 30 chr11 40844270 40844533 -109939020 + L1M4 LINE L1 4061 4347 -1799 1361 101 96 0 chr11 40844958 40845167 -109938386 - MER30 DNA MER1_type -1 229 1 31 58 0 0 chr11 40845224 40845276 -109938277 + AT_rich Low_complexity Low_complexity 1 52 0 2506 128 5 8 chr11 40847361 40847737 -109935816 - THE1C LTR MaLR 0 375 1 351 0 0 0 chr11 40847806 40847845 -109935708 + (TG)n Simple_repeat Simple_repeat 2 40 0 596 271 141 7 chr11 40848211 40848510 -109935043 + MER58B DNA MER1_type 2 340 -1 1263 276 59 51 chr11 40849327 40850072 -109933481 + MER97c DNA MER1_type? 6 756 -334 3792 267 52 29 chr11 40850107 40851498 -109932055 + L1M4 LINE L1 17 1440 -5102 2740 124 143 126 chr11 40851500 40852678 -109930875 - LTR12 LTR ERV1 0 1523 9 1433 292 8 10 chr11 40852724 40853210 -109930343 + L1M4 LINE L1 1432 1916 -4730 436 314 85 92 chr11 40853210 40853918 -109929635 + L1MDa LINE L1 19 721 -5819 3148 219 43 47 chr11 40854399 40855136 -109928417 - L1MC3 LINE L1 -743 5403 5529 2290 80 17 7 chr11 40855136 40855435 -109928118 + AluY SINE Alu 4 305 -6 3148 219 43 47 chr11 40855435 40856588 -109926965 - L1MC3 LINE L1 -616 5530 4374 838 226 163 26 chr11 40856603 40856984 -109926569 - L1MC3 LINE L1 -1910 4236 3804 211 320 175 26 chr11 40857001 40857195 -109926358 - L3 LINE CR1 -733 844 622 239 304 103 92 chr11 40857362 40857635 -109925918 - L3 LINE CR1 -1039 538 263 1937 232 37 5 chr11 40858383 40858814 -109924739 - MER68 LTR ERV1 -1 561 117 345 253 55 71 chr11 40858968 40859150 -109924403 + MIR SINE MIR 23 201 -61 369 0 0 0 chr11 40860273 40860314 -109923239 + (TG)n Simple_repeat Simple_repeat 2 42 0 362 235 12 0 chr11 40860378 40860459 -109923094 + MLT1F LTR MaLR 1 82 -460 512 271 158 6 chr11 40860582 40860759 -109922794 + MLT1F LTR MaLR 240 443 -99 264 77 0 0 chr11 40860783 40860822 -109922731 + (A)n Simple_repeat Simple_repeat 1 39 0 21 71 0 0 chr11 40861180 40861222 -109922331 + AT_rich Low_complexity Low_complexity 1 42 0 298 338 99 40 chr11 40861430 40861631 -109921922 + L2 LINE L2 2728 2940 -374 226 367 25 35 chr11 40861789 40861988 -109921565 + L2 LINE L2 3117 3313 0 1659 166 176 166 chr11 40862078 40863087 -109920466 + LTR28 LTR ERV1 1 1020 0 2348 67 3 3 chr11 40863960 40864260 -109919293 - AluY SINE Alu -11 300 1 186 402 0 0 chr11 40864660 40864747 -109918806 - MIR SINE MIR -88 120 34 24 0 0 0 chr11 40865301 40865325 -109918228 + AT_rich Low_complexity Low_complexity 1 24 0 333 389 50 13 chr11 40865431 40865670 -109917883 + MIR SINE MIR 2 249 -13 1472 224 49 58 chr11 40865981 40866483 -109917070 + MLT1F1 LTR MaLR 1 542 0 214 205 0 51 chr11 40866800 40866878 -109916675 + T-rich Low_complexity Low_complexity 2 75 0 198 143 0 0 chr11 40867416 40867451 -109916102 + (TG)n Simple_repeat Simple_repeat 2 36 0 425 136 171 0 chr11 40869468 40869556 -109913997 - AluSx SINE Alu -14 296 194 1028 121 0 0 chr11 40869562 40869703 -109913850 - AluSx SINE Alu -172 141 1 35 41 0 0 chr11 40870311 40870360 -109913193 + AT_rich Low_complexity Low_complexity 1 49 0 5554 196 50 15 chr11 40870377 40871231 -109912322 - L1MC1 LINE L1 -5 6328 5402 726 215 168 47 chr11 40871231 40871612 -109911941 - MSTC LTR MaLR -1 427 1 5554 196 50 15 chr11 40871612 40872235 -109911318 - L1MC1 LINE L1 -931 5402 4802 268 353 114 6 chr11 40872256 40872423 -109911130 - MIR SINE MIR -56 206 22 2006 103 0 0 chr11 40872700 40872961 -109910592 + AluSg SINE Alu 40 300 -10 343 306 56 65 chr11 40874234 40874466 -109909087 + HAL1b LINE L1 684 913 -435 7729 201 87 25 chr11 40875131 40876781 -109906772 - MER52A LTR ERV1 -3 1752 1 798 194 78 119 chr11 40876832 40877135 -109906418 - MLT1A1 LTR MaLR -1 364 76 1878 89 55 30 chr11 40877135 40877440 -109906113 + AluSc SINE Alu 1 312 0 798 194 78 119 chr11 40877440 40877496 -109906057 - MLT1A1 LTR MaLR -289 76 19 180 279 99 99 chr11 40877685 40877857 -109905696 + MIR SINE MIR 72 243 -19 26 0 0 0 chr11 40878496 40878522 -109905031 + AT_rich Low_complexity Low_complexity 1 26 0 338 74 19 0 chr11 40878711 40878765 -109904788 + (GA)n Simple_repeat Simple_repeat 2 56 0 1686 238 88 7 chr11 40878779 40879199 -109904354 - MLT2B1 LTR ERVL -66 454 1 404 271 20 33 chr11 40879326 40879477 -109904076 + L1ME LINE L1 490 638 -5892 571 282 78 58 chr11 40879610 40880149 -109903404 + L1ME LINE L1 1268 1813 -4727 258 292 0 0 chr11 40880823 40880895 -109902658 + MLT1-int LTR MaLR 401 472 -899 396 283 9 0 chr11 40881386 40881492 -109902061 - L1MC4 LINE L1 -1219 6823 6717 267 54 0 0 chr11 40881941 40881978 -109901575 + (CA)n Simple_repeat Simple_repeat 1 37 0 715 84 39 13 chr11 40882768 40882922 -109900631 + (TAGA)n Simple_repeat Simple_repeat 2 159 0 669 161 124 7 chr11 40882932 40883069 -109900484 - LTR40a LTR ERVL -366 153 1 22 70 0 0 chr11 40883255 40883298 -109900255 + AT_rich Low_complexity Low_complexity 1 43 0 10485 183 38 14 chr11 40883328 40885875 -109897678 - L1MA6 LINE L1 -6 6294 3809 225 0 0 0 chr11 40885875 40885900 -109897653 + (TTG)n Simple_repeat Simple_repeat 3 27 0 10485 183 38 14 chr11 40885900 40886297 -109897256 - L1MA6 LINE L1 -2491 3809 3423 1979 126 3 20 chr11 40886297 40886591 -109896962 - AluSp SINE Alu -24 289 1 10485 183 38 14 chr11 40886591 40886840 -109896713 - L1MA6 LINE L1 -2877 3423 3181 1787 236 31 9 chr11 40886840 40887263 -109896290 + MSTB1 LTR MaLR 1 432 0 10485 183 38 14 chr11 40887263 40887353 -109896200 - L1MA6 LINE L1 -3119 3181 2924 3994 183 27 10 chr11 40887349 40888332 -109895221 - L1MA4 LINE L1 -251 7468 6473 * 1147 231 51 35 chr11 40888334 40888788 -109894765 - L1MA4 LINE L1 -3957 3608 3148 1838 266 21 22 chr11 40888792 40889468 -109894085 - L1MA4 LINE L1 -4637 2928 2254 781 307 130 22 chr11 40889867 40890466 -109893087 - L1ME2 LINE L1 -25 6139 5476 413 238 28 49 chr11 40890475 40890618 -109892935 - L1PB4 LINE L1 -6 6150 6011 675 234 88 87 chr11 40890625 40891150 -109892403 - L1ME2 LINE L1 -675 5487 4971 209 231 33 22 chr11 40891158 40891249 -109892304 + (TA)n Simple_repeat Simple_repeat 2 93 0 243 333 48 12 chr11 40891249 40891414 -109892139 - L1ME2 LINE L1 -1207 4939 4769 28 61 0 0 chr11 40891694 40891743 -109891810 + AT_rich Low_complexity Low_complexity 1 49 0 1356 247 46 56 chr11 40892091 40892593 -109890960 + MLT1D LTR MaLR 9 505 0 2130 101 14 0 chr11 40892893 40893180 -109890373 + AluSg SINE Alu 1 291 -19 264 77 0 0 chr11 40894808 40894847 -109888706 + (TG)n Simple_repeat Simple_repeat 2 40 0 341 286 79 14 chr11 40895056 40895196 -109888357 + MIR SINE MIR 113 261 -1 2233 94 0 0 chr11 40896311 40896597 -109886956 + AluSg SINE Alu 9 294 -16 20651 158 22 13 chr11 40896850 40904388 -109879165 + L1MA3 LINE L1 17 7724 0 384 281 81 36 chr11 40904639 40904836 -109878717 - L2 LINE L2 0 3313 3104 276 30 0 0 chr11 40904836 40904869 -109878684 + (TG)n Simple_repeat Simple_repeat 1 33 0 384 281 81 36 chr11 40904869 40904892 -109878661 - L2 LINE L2 -209 3104 3083 1260 328 57 11 chr11 40904942 40905503 -109878050 - L2 LINE L2 -781 2533 1947 2314 164 93 73 chr11 40905987 40906589 -109876964 + LTR18B LTR ERVL 1 614 0 234 327 19 37 chr11 40906858 40906965 -109876588 + L2 LINE L2 3164 3268 -4 23 0 0 0 chr11 40907580 40907603 -109875950 + AT_rich Low_complexity Low_complexity 1 23 0 250 205 12 36 chr11 40907712 40907795 -109875758 + A-rich Low_complexity Low_complexity 3 83 0 285 316 53 53 chr11 40908849 40908963 -109874590 + MIR SINE MIR 58 174 -88 2207 119 36 30 chr11 40908963 40909325 -109874228 + THE1B LTR MaLR 1 364 0 285 316 53 53 chr11 40909325 40909397 -109874156 + MIR SINE MIR 173 244 -18 313 222 139 19 chr11 40909793 40909901 -109873652 + MIR SINE MIR 127 247 -15 222 267 198 0 chr11 40911121 40911207 -109872346 - MER5A DNA MER1_type -77 112 10 851 181 39 34 chr11 40911228 40911432 -109872121 + MER3 DNA MER1_type 5 209 0 689 220 83 0 chr11 40911640 40911808 -109871745 + MIR SINE MIR 49 230 -32 553 211 88 4 chr11 40911898 40912136 -109871417 - L1ME2 LINE L1 -14 6150 5847 759 206 92 32 chr11 40912142 40912360 -109871193 - L1ME2 LINE L1 -362 5802 5572 1592 236 62 24 chr11 40912367 40912867 -109870686 + LTR40a LTR ERVL 1 519 0 596 289 17 60 chr11 40913028 40913260 -109870293 + HERVL40 LTR ERVL 198 419 -5111 1109 139 29 2 chr11 40913739 40914031 -109869522 + THE1C LTR MaLR 1 375 0 3366 323 30 33 chr11 40914076 40915374 -109868179 + HERVL40 LTR ERVL 1593 2886 -2644 1212 247 7 27 chr11 40915374 40915674 -109867879 + HERVL40 LTR ERVL 3009 3302 -2228 466 312 67 18 chr11 40915740 40916022 -109867531 - L1ME2 LINE L1 -1012 5134 4839 26 0 0 0 chr11 40916031 40916057 -109867496 + AT_rich Low_complexity Low_complexity 1 26 0 522 156 10 0 chr11 40916173 40916269 -109867284 + L1PBa LINE L1 2788 2884 -3979 * 1960 170 6 99 chr11 40916265 40916759 -109866794 + L1 LINE L1 3016 3463 -3399 29 101 0 0 chr11 40916975 40917074 -109866479 + AT_rich Low_complexity Low_complexity 1 99 0 1796 172 38 0 chr11 40917515 40917887 -109865666 - L1MA4 LINE L1 -4 6296 5911 232 294 25 34 chr11 40918500 40918619 -109864934 + GA-rich Low_complexity Low_complexity 4 121 0 2418 38 6 19 chr11 40918887 40919200 -109864353 + AluY SINE Alu 1 309 -2 3626 109 19 2 chr11 40919895 40920425 -109863128 + L1PA10 LINE L1 5624 6162 -6 392 305 87 92 chr11 40920465 40921065 -109862488 - HAL1 LINE L1 -47 2460 1864 438 284 121 16 chr11 40921072 40921262 -109862291 + HAL1 LINE L1 981 1190 -1317 228 358 0 37 chr11 40921589 40921698 -109861855 - L2 LINE L2 -213 3059 2955 22 0 0 0 chr11 40923237 40923259 -109860294 + AT_rich Low_complexity Low_complexity 1 22 0 3043 54 0 3 chr11 40923337 40923725 -109859828 - L1PA4 LINE L1 0 6155 5769 871 0 0 0 chr11 40923725 40923822 -109859731 + L1PA4 LINE L1 5696 5792 -363 209 306 61 10 chr11 40923834 40923932 -109859621 - MIR SINE MIR -56 206 104 465 298 135 14 chr11 40923944 40924159 -109859394 + MIR SINE MIR 13 253 -9 192 341 12 35 chr11 40924168 40924253 -109859300 - MIR SINE MIR -160 102 20 1636 99 12 56 chr11 40925049 40925301 -109858252 - AluSg SINE Alu -16 294 54 245 342 61 56 chr11 40925520 40925716 -109857837 - L2 LINE L2 -969 2345 2149 769 266 104 29 chr11 40926096 40926586 -109856967 - MLT2E LTR ERVL -4 624 10 351 0 0 0 chr11 40926673 40926712 -109856841 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1614 174 4 4 chr11 40926838 40927102 -109856451 - AluJb SINE Alu -38 274 11 730 147 0 20 chr11 40928377 40928527 -109855026 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 3482 22 0 2 chr11 40928942 40929356 -109854197 - L1PA2 LINE L1 -1 6154 5742 6376 138 86 29 chr11 40929356 40930597 -109852956 + L1PA7 LINE L1 2760 3929 -2225 23 0 0 0 chr11 40930597 40930620 -109852933 + AT_rich Low_complexity Low_complexity 1 23 0 6376 138 86 29 chr11 40930620 40930716 -109852837 + L1PA7 LINE L1 3929 4018 -2136 34 0 0 0 chr11 40930716 40930750 -109852803 + AT_rich Low_complexity Low_complexity 1 34 0 6376 138 86 29 chr11 40930750 40932466 -109851087 + L1PA7 LINE L1 4018 6150 -4 1230 146 0 0 chr11 40933128 40933313 -109850240 + AluY SINE Alu 105 289 -22 21 36 0 0 chr11 40933412 40933440 -109850113 + AT_rich Low_complexity Low_complexity 1 28 0 373 250 79 72 chr11 40934748 40934900 -109848653 - MIR3 SINE MIR -38 170 18 23 0 0 29 chr11 40935781 40935798 -109847755 + AT_rich Low_complexity Low_complexity 1 17 -16 1937 113 3 27 chr11 40935798 40936091 -109847462 - AluSg SINE Alu -24 286 1 23 0 0 29 chr11 40936091 40936107 -109847446 + AT_rich Low_complexity Low_complexity 17 33 0 24 53 0 0 chr11 40936454 40936492 -109847061 + AT_rich Low_complexity Low_complexity 1 38 0 219 178 27 27 chr11 40936638 40936711 -109846842 + (TA)n Simple_repeat Simple_repeat 1 73 0 205 300 0 14 chr11 40937081 40937151 -109846402 + GA-rich Low_complexity Low_complexity 2 70 0 1450 212 37 3 chr11 40937604 40937953 -109845600 - L1MA8 LINE L1 -7 6284 5924 2341 151 5 51 chr11 40937953 40938004 -109845549 - MSTA LTR MaLR 0 428 376 2194 106 7 0 chr11 40938004 40938297 -109845256 - AluSp SINE Alu -16 297 3 2341 151 5 51 chr11 40938297 40938694 -109844859 - MSTA LTR MaLR -52 376 1 1211 122 37 11 chr11 40938695 40938884 -109844669 - MSTA LTR MaLR -234 194 1 8141 207 18 11 chr11 40938884 40940447 -109843106 - MSTA-int LTR MaLR 0 1651 79 2388 164 25 2 chr11 40940447 40940843 -109842710 - MSTA LTR MaLR -23 405 1 1401 204 7 7 chr11 40940843 40941127 -109842426 - L1MA8 LINE L1 -363 5928 5645 268 336 10 0 chr11 40941127 40941231 -109842322 - Tigger5 DNA MER2_type 0 2323 2219 3446 214 26 6 chr11 40941280 40942383 -109841170 - L1MA8 LINE L1 -665 5647 4518 1750 188 57 31 chr11 40942386 40942924 -109840629 + MLT2A2 LTR ERVL 1 554 0 1300 179 84 3 chr11 40942928 40943225 -109840328 - L1MA8 LINE L1 -1629 4517 4197 1109 268 151 22 chr11 40943227 40944223 -109839330 + L1M4c LINE L1 1522 2664 -3718 288 146 17 67 chr11 40944227 40944405 -109839148 + (TA)n Simple_repeat Simple_repeat 1 169 0 5918 231 44 32 chr11 40944405 40946167 -109837386 + L1M4c LINE L1 2683 4465 -1917 24 53 0 0 chr11 40946215 40946253 -109837300 + AT_rich Low_complexity Low_complexity 1 38 0 1374 206 18 18 chr11 40947247 40947565 -109835988 + AluJo SINE Alu 1 318 0 22 35 0 0 chr11 40949285 40949314 -109834239 + AT_rich Low_complexity Low_complexity 1 29 0 1435 200 51 51 chr11 40949716 40950106 -109833447 + MLT1B LTR MaLR 1 390 0 1584 227 69 87 chr11 40950763 40951327 -109832226 + MLT2B3 LTR ERVL 1 554 0 245 362 107 12 chr11 40951384 40951627 -109831926 + L2 LINE L2 389 654 -2660 2573 178 8 6 chr11 40951719 40952209 -109831344 - L1MB3 LINE L1 -4 6179 5689 185 138 0 0 chr11 40952570 40952599 -109830954 + L2 LINE L2 3285 3313 0 23 0 0 0 chr11 40953585 40953608 -109829945 + AT_rich Low_complexity Low_complexity 1 23 0 2006 134 3 3 chr11 40953679 40954006 -109829547 - AluSq SINE Alu 0 327 1 228 282 51 0 chr11 40954011 40954089 -109829464 - L2 LINE L2 -12 3301 3220 892 256 9 5 chr11 40954204 40954423 -109829130 - MER58A DNA MER1_type 0 224 5 192 396 65 0 chr11 40954580 40954734 -109828819 + MIR SINE MIR 52 215 -47 834 309 26 8 chr11 40954748 40955013 -109828540 - HERV16 LTR ERVL -2538 3116 2847 1087 306 83 30 chr11 40955170 40955710 -109827843 - HERV16 LTR ERVL -4157 839 271 538 329 118 24 chr11 40955953 40956333 -109827220 - LTR16A LTR ERVL -7 443 28 25 65 0 0 chr11 40957729 40957775 -109825778 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr11 40957869 40957897 -109825656 + AT_rich Low_complexity Low_complexity 1 28 0 519 308 75 9 chr11 40957910 40958124 -109825429 - MIR SINE MIR -10 252 25 25 31 0 0 chr11 40958124 40958156 -109825397 + AT_rich Low_complexity Low_complexity 1 32 0 426 207 52 43 chr11 40958766 40958882 -109824671 + Charlie5 DNA MER1_type 1 117 -2495 22 35 0 0 chr11 40958882 40958911 -109824642 + AT_rich Low_complexity Low_complexity 1 29 0 1176 241 114 33 chr11 40959041 40959531 -109824022 + L1ME1 LINE L1 5618 6147 -19 851 276 91 13 chr11 40959552 40960081 -109823472 + L1MB1 LINE L1 2590 3159 -2987 7359 211 39 27 chr11 40960085 40962225 -109821328 + L1MB1 LINE L1 3318 5496 -672 2103 95 0 16 chr11 40962225 40962541 -109821012 + AluY SINE Alu 1 311 0 7359 211 39 27 chr11 40962541 40963186 -109820367 + L1MB1 LINE L1 5496 6131 -37 825 164 34 0 chr11 40963201 40963347 -109820206 + Tigger5 DNA MER2_type 2153 2303 -20 252 151 57 0 chr11 40963366 40963419 -109820134 + L1MA10 LINE L1 6271 6326 -8 4039 162 16 55 chr11 40963572 40964429 -109819124 - L1PB4 LINE L1 0 6156 5333 738 113 81 16 chr11 40964417 40964541 -109819012 - L1PA16 LINE L1 -310 5856 5725 * 5069 220 34 7 chr11 40964621 40965497 -109818056 - L1PB4 LINE L1 -842 5304 4382 369 93 0 0 chr11 40965497 40965551 -109818002 + (TG)n Simple_repeat Simple_repeat 2 55 0 5069 220 34 7 chr11 40965551 40965932 -109817621 - L1PB4 LINE L1 -1764 4382 4013 240 308 101 14 chr11 40966141 40966417 -109817136 + L1ME2 LINE L1 4826 5125 -1021 2113 242 96 26 chr11 40966498 40967345 -109816208 + L1ME2 LINE L1 5277 6164 0 232 333 82 0 chr11 40967352 40967487 -109816066 - L2 LINE L2 -956 2358 2213 528 30 0 0 chr11 40967908 40967974 -109815579 + (TA)n Simple_repeat Simple_repeat 1 66 0 475 214 26 0 chr11 40968988 40969105 -109814448 + L1MC1 LINE L1 6208 6327 -6 29 28 0 0 chr11 40969295 40969331 -109814222 + AT_rich Low_complexity Low_complexity 1 36 0 222 237 246 35 chr11 40970105 40970219 -109813334 + MIR3 SINE MIR 4 141 -67 21 71 0 0 chr11 40971076 40971118 -109812435 + AT_rich Low_complexity Low_complexity 1 42 0 279 254 36 18 chr11 40971643 40971753 -109811800 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 216 0 0 0 chr11 40971869 40971893 -109811660 + (T)n Simple_repeat Simple_repeat 1 24 0 37 23 0 0 chr11 40973058 40973102 -109810451 + AT_rich Low_complexity Low_complexity 1 44 0 6833 262 122 59 chr11 40974297 40976010 -109807543 - LTR52-int LTR ERVL -205 3351 1748 1226 222 57 72 chr11 40976010 40976523 -109807030 - MLT1D LTR MaLR 0 505 1 6833 262 122 59 chr11 40976523 40977958 -109805595 - LTR52-int LTR ERVL -1808 1748 3 454 189 9 54 chr11 40977998 40978046 -109805507 - LTR52 LTR ERVL -41 380 331 1167 262 2 60 chr11 40978046 40978443 -109805110 - MLT1A2 LTR MaLR 0 374 1 454 189 9 54 chr11 40978443 40978505 -109805048 - LTR52 LTR ERVL -90 331 275 297 245 27 136 chr11 40978574 40978721 -109804832 + MLT1H LTR MaLR 382 512 -37 32 0 0 0 chr11 40979226 40979258 -109804295 + AT_rich Low_complexity Low_complexity 1 32 0 2393 67 3 0 chr11 40980153 40980453 -109803100 - AluY SINE Alu -10 301 1 359 372 44 31 chr11 40981254 40981547 -109802006 + L2 LINE L2 1801 2097 -1217 916 172 11 111 chr11 40983487 40983766 -109799787 - L1MB8 LINE L1 0 6178 5928 1552 228 0 3 chr11 40983785 40984119 -109799434 - L1MA6 LINE L1 -238 6062 5730 218 360 13 0 chr11 40984171 40984246 -109799307 + MIR3 SINE MIR 84 159 -49 2431 70 0 0 chr11 40984395 40984695 -109798858 + AluY SINE Alu 1 300 -11 199 292 97 0 chr11 40985452 40985524 -109798029 - MIR SINE MIR -27 235 157 368 119 30 99 chr11 40986699 40986769 -109796784 - L1PA11 LINE L1 -3 6171 6109 2391 144 6 0 chr11 40986769 40987131 -109796422 + THE1B LTR MaLR 1 364 0 368 119 30 99 chr11 40987131 40987161 -109796392 - L1PA11 LINE L1 -65 6109 6078 2574 87 2 174 chr11 40987161 40987701 -109795852 + THE1B-int LTR MaLR 32 478 -1102 207 139 0 0 chr11 40987969 40988005 -109795548 + (TG)n Simple_repeat Simple_repeat 1 36 0 505 243 40 34 chr11 40988170 40988318 -109795235 - MIR SINE MIR -112 150 2 26 0 0 0 chr11 40988674 40988700 -109794853 + AT_rich Low_complexity Low_complexity 1 26 0 3007 126 2 9 chr11 40989054 40989498 -109794055 + MLT2A2 LTR ERVL 1 441 -12 312 335 78 24 chr11 40989861 40990067 -109793486 - MIR SINE MIR -26 236 20 317 265 61 75 chr11 40990495 40990642 -109792911 - MIR SINE MIR -69 193 49 1684 169 29 0 chr11 40991002 40991280 -109792273 - AluJb SINE Alu -26 286 1 481 67 13 13 chr11 40991751 40991826 -109791727 + (TTCC)n Simple_repeat Simple_repeat 4 78 0 4605 209 67 36 chr11 40991883 40992908 -109790645 - L1MA10 LINE L1 0 6334 5342 189 74 0 0 chr11 40992908 40992935 -109790618 + (TTA)n Simple_repeat Simple_repeat 1 27 0 4605 209 67 36 chr11 40992935 40994279 -109789274 - L1MA10 LINE L1 -992 5342 3894 650 307 73 58 chr11 40994421 40994508 -109789045 - LTR16C LTR ERVL 0 491 407 2131 195 42 2 chr11 40994508 40994918 -109788635 - MSTB LTR MaLR 0 426 1 650 307 73 58 chr11 40994918 40995159 -109788394 - LTR16C LTR ERVL -84 407 158 253 271 6 83 chr11 40995406 40995587 -109787966 + L1MDa LINE L1 235 401 -6139 1440 196 54 8 chr11 40996036 40996409 -109787144 + L1MDa LINE L1 1623 2012 -4528 259 343 9 0 chr11 40996579 40996681 -109786872 + MLT1I LTR MaLR 1 103 -306 376 284 63 0 chr11 40996681 40996808 -109786745 - MLT1H LTR MaLR 0 549 415 235 108 27 0 chr11 40997043 40997080 -109786473 + L1MA4 LINE L1 6177 6214 -86 425 360 40 23 chr11 40997377 40997677 -109785876 + HERV16 LTR ERVL 1665 1969 -3027 267 315 102 8 chr11 40997717 40997844 -109785709 + L2 LINE L2 2611 2749 -565 752 295 70 56 chr11 40997847 40998078 -109785475 - L1MDa LINE L1 -4470 1610 1384 2150 100 0 28 chr11 40998078 40998398 -109785155 - AluY SINE Alu 0 311 1 2388 99 3 0 chr11 40998401 40998713 -109784840 - AluSp SINE Alu 0 313 1 752 295 70 56 chr11 40998713 40999292 -109784261 - L1MDa LINE L1 -4697 1383 810 407 159 35 0 chr11 40999292 40999405 -109784148 + (TA)n Simple_repeat Simple_repeat 2 118 0 1260 303 70 39 chr11 40999406 41000182 -109783371 - L1MDa LINE L1 -5269 801 2 269 396 71 5 chr11 41000193 41000390 -109783163 + L2 LINE L2 2762 2971 -343 2406 188 40 30 chr11 41000403 41000946 -109782607 + LTR60 LTR ERV1 1 549 -37 351 200 82 67 chr11 41000838 41000973 -109782580 + TAR1 Satellite telomeric 49 185 -1926 * 1001 234 77 29 chr11 41001258 41001570 -109781983 + LTR60-int LTR ERV1 1081 1407 -3391 581 256 71 42 chr11 41002111 41002403 -109781150 + LTR60-int LTR ERV1 1543 1828 -5263 2498 244 45 20 chr11 41002420 41003587 -109779966 + LTR60-int LTR ERV1 2595 4038 -842 348 340 33 38 chr11 41004492 41004860 -109778693 + LTR60-int LTR ERV1 6085 6450 -226 2646 196 7 37 chr11 41005104 41005677 -109777876 + LTR60 LTR ERV1 1 556 -30 2204 82 6 25 chr11 41005940 41006255 -109777298 - AluY SINE Alu -1 310 2 300 159 46 0 chr11 41006478 41006551 -109777002 - L1MB8 LINE L1 -10 6174 6100 1608 219 99 67 chr11 41006777 41007312 -109776241 + MLT2B3 LTR ERVL 3 554 0 28 48 0 0 chr11 41007512 41007554 -109775999 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chr11 41008555 41008600 -109774953 + AT_rich Low_complexity Low_complexity 1 45 0 206 121 0 0 chr11 41009473 41009506 -109774047 + (T)n Simple_repeat Simple_repeat 1 33 0 1847 138 3 7 chr11 41009885 41010174 -109773379 + AluSx SINE Alu 1 288 -24 23 68 0 0 chr11 41010241 41010285 -109773268 + AT_rich Low_complexity Low_complexity 1 44 0 338 268 202 25 chr11 41010299 41010497 -109773056 - MIR SINE MIR -21 241 9 2303 115 0 0 chr11 41011056 41011368 -109772185 + AluSx SINE Alu 1 312 0 233 209 0 0 chr11 41011712 41011755 -109771798 - L1 LINE L1 -1390 4756 4714 935 223 14 0 chr11 41011852 41012067 -109771486 - L1 LINE L1 -1390 4756 4539 211 374 89 0 chr11 41012124 41012247 -109771306 + L2 LINE L2 3179 3312 -1 26 50 0 0 chr11 41012554 41012594 -109770959 + AT_rich Low_complexity Low_complexity 1 40 0 1875 165 50 70 chr11 41012882 41013081 -109770472 + MLT2A2 LTR ERVL 1 202 -352 1920 160 0 3 chr11 41013081 41013381 -109770172 + AluSx SINE Alu 6 304 -8 1875 165 50 70 chr11 41013381 41013735 -109769818 + MLT2A2 LTR ERVL 202 554 0 264 206 39 63 chr11 41013740 41013893 -109769660 + MLT1B LTR MaLR 1 203 -187 2250 105 3 0 chr11 41013893 41014197 -109769356 + AluSp SINE Alu 1 305 -8 264 206 39 63 chr11 41014197 41014261 -109769292 + MLT1B LTR MaLR 203 267 -123 321 100 0 0 chr11 41014449 41014499 -109769054 + (GGA)n Simple_repeat Simple_repeat 3 52 0 754 308 112 66 chr11 41014529 41015090 -109768463 + MLT1E LTR MaLR 3 589 -4 384 251 82 35 chr11 41015332 41015503 -109768050 + L1ME LINE L1 854 1032 -5173 25 31 0 0 chr11 41015514 41015546 -109768007 + AT_rich Low_complexity Low_complexity 1 32 0 256 278 87 52 chr11 41015618 41015791 -109767762 + L1ME LINE L1 1143 1321 -4896 245 231 0 0 chr11 41015939 41016004 -109767549 + L1ME LINE L1 1754 1818 -4578 316 329 14 41 chr11 41016064 41016210 -109767343 + L1ME LINE L1 1914 2055 -4341 300 176 0 0 chr11 41016237 41016305 -109767248 + GA-rich Low_complexity Low_complexity 1 68 0 234 214 45 11 chr11 41016307 41016396 -109767157 + L1ME LINE L1 2199 2290 -4106 474 195 62 55 chr11 41016594 41016769 -109766784 - L1ME2 LINE L1 -130 6034 5843 2267 99 3 0 chr11 41016844 41017146 -109766407 - AluSq SINE Alu -10 303 1 944 153 79 61 chr11 41017618 41017847 -109765706 - L1MA8 LINE L1 -162 6129 5897 405 204 40 79 chr11 41017840 41017992 -109765561 + L1MA8 LINE L1 6105 6250 -41 * 44 35 0 0 chr11 41018446 41018504 -109765049 + AT_rich Low_complexity Low_complexity 1 58 0 540 259 155 7 chr11 41019594 41019884 -109763669 - MER69 DNA AcHobo -186 2340 2008 664 285 79 87 chr11 41019898 41020418 -109763135 - MER69 DNA AcHobo -1984 542 27 16144 140 22 22 chr11 41020616 41021062 -109762491 + Tigger4(Zombi) DNA MER2_type 12 457 -2274 2214 137 0 0 chr11 41021062 41021375 -109762178 + AluSq SINE Alu 1 313 0 16144 140 22 22 chr11 41021375 41023648 -109759905 + Tigger4(Zombi) DNA MER2_type 456 2731 0 207 333 87 7 chr11 41024113 41024251 -109759302 - MIR SINE MIR -8 254 106 186 339 0 17 chr11 41025241 41025300 -109758253 - L2 LINE L2 0 3272 3215 237 178 0 0 chr11 41025940 41025985 -109757568 + (TG)n Simple_repeat Simple_repeat 1 45 0 26 0 0 0 chr11 41026483 41026509 -109757044 + AT_rich Low_complexity Low_complexity 1 26 0 214 357 102 6 chr11 41027202 41027359 -109756194 - MIR SINE MIR -17 245 74 2211 120 0 3 chr11 41027402 41027703 -109755850 - AluSp SINE Alu -13 300 1 1366 203 6 63 chr11 41027940 41028256 -109755297 + AluJo SINE Alu 1 298 -14 240 35 0 0 chr11 41028914 41028943 -109754610 + (A)n Simple_repeat Simple_repeat 1 29 0 2008 101 4 0 chr11 41029012 41029280 -109754273 - AluSg SINE Alu -11 299 31 588 326 54 8 chr11 41029545 41029784 -109753769 + MIR SINE MIR 5 254 -8 1864 214 22 7 chr11 41030903 41031360 -109752193 - L1 LINE L1 -1300 4846 4383 5087 148 40 16 chr11 41031365 41032500 -109751053 + L1PA16 LINE L1 5008 6166 0 334 114 57 0 chr11 41032584 41032672 -109750881 + (TA)n Simple_repeat Simple_repeat 1 93 0 35 63 0 0 chr11 41034733 41034796 -109748757 + AT_rich Low_complexity Low_complexity 1 63 0 1930 146 14 88 chr11 41035885 41036317 -109747236 + L1MA4 LINE L1 5896 6295 -5 30 77 0 0 chr11 41036364 41036429 -109747124 + AT_rich Low_complexity Low_complexity 1 65 0 1987 110 68 42 chr11 41036651 41037006 -109746547 - THE1B LTR MaLR 0 364 1 182 293 36 120 chr11 41037224 41037391 -109746162 - MER5A DNA MER1_type -1 188 36 1639 196 45 15 chr11 41037704 41038036 -109745517 + MLT1A1 LTR MaLR 24 365 0 1842 188 12 12 chr11 41039076 41039422 -109744131 + MER44D DNA MER2_type 184 584 -21 2665 99 8 0 chr11 41040931 41041303 -109742250 - THE1C LTR MaLR 0 375 1 24 53 0 0 chr11 41042030 41042068 -109741485 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr11 41042345 41042375 -109741178 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 41042484 41042512 -109741041 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr11 41042541 41042569 -109740984 + AT_rich Low_complexity Low_complexity 1 28 0 881 120 20 33 chr11 41042825 41042975 -109740578 + AluSg/x SINE Alu 165 312 0 3268 196 64 24 chr11 41043880 41044674 -109738879 - LTR1B LTR ERV1 0 826 1 23 54 0 0 chr11 41045412 41045449 -109738104 + AT_rich Low_complexity Low_complexity 1 37 0 233 283 22 36 chr11 41045485 41045581 -109737972 - MIR SINE MIR -103 105 37 576 266 94 107 chr11 41046305 41047046 -109736507 - L2 LINE L2 0 3313 2593 250 49 82 0 chr11 41047676 41047737 -109735816 + (TA)n Simple_repeat Simple_repeat 2 67 0 3043 222 22 32 chr11 41047737 41048520 -109735033 + L1PA15 LINE L1 3863 4637 -1509 5405 137 20 2 chr11 41048640 41049968 -109733585 + L1PA15 LINE L1 4821 6163 -2 2111 82 13 26 chr11 41050262 41050565 -109732988 + AluSx SINE Alu 1 299 -13 227 265 24 12 chr11 41050713 41050796 -109732757 + (TA)n Simple_repeat Simple_repeat 2 85 0 1758 135 12 0 chr11 41050961 41051220 -109732333 + AluSx SINE Alu 39 300 -12 186 329 49 0 chr11 41051306 41051388 -109732165 + L2 LINE L2 3220 3305 -8 21 0 0 0 chr11 41052552 41052573 -109730980 + AT_rich Low_complexity Low_complexity 1 21 0 317 262 36 0 chr11 41052708 41052792 -109730761 + CT-rich Low_complexity Low_complexity 1 87 0 519 258 0 0 chr11 41052855 41052975 -109730578 - FLAM_A SINE Alu -13 120 1 201 139 0 0 chr11 41053353 41053396 -109730157 + (CATA)n Simple_repeat Simple_repeat 2 44 0 6408 83 22 2 chr11 41053521 41054694 -109728859 + L1PA8 LINE L1 4974 6164 -8 778 289 28 14 chr11 41055321 41055532 -109728021 + MER58A DNA MER1_type 2 215 -9 802 185 14 7 chr11 41055669 41055815 -109727738 + FRAM SINE Alu 17 163 -13 425 244 0 0 chr11 41055825 41055907 -109727646 - MLT1F LTR MaLR -103 439 358 409 333 27 7 chr11 41055935 41056085 -109727468 - MLT1F LTR MaLR -389 153 1 722 283 9 35 chr11 41056258 41056488 -109727065 + MER58A DNA MER1_type 1 224 0 387 0 0 0 chr11 41056638 41056681 -109726872 + (CA)n Simple_repeat Simple_repeat 1 43 0 298 335 137 5 chr11 41057768 41057965 -109725588 - MIR SINE MIR -10 252 30 23 33 0 0 chr11 41059024 41059054 -109724499 + AT_rich Low_complexity Low_complexity 1 30 0 2530 192 29 50 chr11 41059096 41059711 -109723842 - MER7C DNA MER2_type 0 602 1 1659 178 64 3 chr11 41060053 41060367 -109723186 + MER1B DNA MER1_type 5 337 0 213 232 14 0 chr11 41060510 41060579 -109722974 + (TTTAA)n Simple_repeat Simple_repeat 3 72 0 226 266 106 62 chr11 41060899 41061012 -109722541 - L2 LINE L2 -31 3282 3165 2454 190 51 42 chr11 41061389 41061936 -109721617 - MLT2B3 LTR ERVL -2 552 1 23 0 0 0 chr11 41062197 41062220 -109721333 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr11 41062316 41062338 -109721215 + AT_rich Low_complexity Low_complexity 1 22 0 455 349 71 42 chr11 41062650 41063131 -109720422 + HAL1b LINE L1 76 570 -778 248 335 47 24 chr11 41063199 41063411 -109720142 + HAL1b LINE L1 680 896 -452 3964 126 43 52 chr11 41063496 41064288 -109719265 + LTR1 LTR ERV1 1 785 0 273 301 113 43 chr11 41064656 41065333 -109718220 + L1ME LINE L1 5041 5764 -406 290 26 26 0 chr11 41065355 41065394 -109718159 + (TA)n Simple_repeat Simple_repeat 1 40 0 1442 220 3 25 chr11 41065395 41065709 -109717844 - AluJo SINE Alu -5 307 1 776 319 106 24 chr11 41065965 41066539 -109717014 + L1MC4a LINE L1 5303 5923 -1885 404 267 61 6 chr11 41066665 41066845 -109716708 + L1M4 LINE L1 3317 3506 -2640 323 301 79 64 chr11 41067715 41068120 -109715433 + L1ME LINE L1 541 951 -5119 26 0 0 0 chr11 41069108 41069134 -109714419 + AT_rich Low_complexity Low_complexity 1 26 0 2120 151 16 19 chr11 41070344 41070709 -109712844 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 41070896 41070917 -109712636 + AT_rich Low_complexity Low_complexity 1 21 0 6632 73 3 0 chr11 41070917 41072067 -109711486 - L1PA6 LINE L1 0 6154 5017 1475 146 45 0 chr11 41072171 41072417 -109711136 + Tigger4(Zombi) DNA MER2_type 212 468 -2263 505 242 0 0 chr11 41072418 41072517 -109711036 + AluS SINE Alu 1 99 -214 12608 78 5 0 chr11 41072517 41074218 -109709335 - L1P LINE L1 -1232 4914 3205 210 37 0 0 chr11 41074218 41074245 -109709308 + (A)n Simple_repeat Simple_repeat 1 27 0 4051 156 5 38 chr11 41074354 41075125 -109708428 - L1P LINE L1 -2524 3622 2877 12957 153 25 34 chr11 41075339 41076301 -109707252 - Tigger1 DNA MER2_type 0 2418 1450 1617 122 93 11 chr11 41076301 41076580 -109706973 - AluSx SINE Alu -10 302 1 12957 153 25 34 chr11 41076580 41078054 -109705499 - Tigger1 DNA MER2_type -968 1450 2 354 171 0 0 chr11 41078623 41078693 -109704860 + (TG)n Simple_repeat Simple_repeat 1 70 0 2802 198 70 8 chr11 41078955 41079542 -109704011 - MER67B LTR ERV1 0 661 39 522 251 48 69 chr11 41079686 41079917 -109703636 + MLT1F LTR MaLR 317 542 0 297 310 146 0 chr11 41081002 41081160 -109702393 + MIR SINE MIR 58 238 -24 23 0 0 0 chr11 41081725 41081748 -109701805 + AT_rich Low_complexity Low_complexity 1 23 0 2025 159 71 23 chr11 41081891 41082399 -109701154 + MLT2A2 LTR ERVL 1 554 0 1684 158 40 62 chr11 41082944 41083317 -109700236 + MLT1A1 LTR MaLR 1 365 0 5138 186 30 46 chr11 41083451 41085576 -109697977 - L1PB4 LINE L1 -5 6151 4052 182 385 60 28 chr11 41085606 41085824 -109697729 + L2 LINE L2 2311 2535 -779 3180 173 100 16 chr11 41085915 41086622 -109696931 - LTR1B LTR ERV1 -3 782 1 3732 111 33 11 chr11 41086710 41087419 -109696134 + LTR17 LTR ERV1 1 773 -7 1285 224 32 0 chr11 41087450 41087545 -109696008 + AluSx SINE Alu 27 117 -195 459 0 0 0 chr11 41087545 41087596 -109695957 + (CA)n Simple_repeat Simple_repeat 2 52 0 1285 224 32 0 chr11 41087596 41087777 -109695776 + AluSx SINE Alu 117 312 0 2081 60 0 0 chr11 41088151 41088416 -109695137 - AluY SINE Alu -2 309 45 1994 204 34 9 chr11 41088643 41089084 -109694469 - LTR47A LTR ERVL 0 452 1 469 263 35 91 chr11 41089733 41089965 -109693588 + MIR SINE MIR 44 262 0 22 0 0 0 chr11 41090443 41090465 -109693088 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 41090544 41090565 -109692988 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 41090921 41090945 -109692608 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr11 41091006 41091030 -109692523 + AT_rich Low_complexity Low_complexity 1 24 0 2253 78 0 35 chr11 41091224 41091543 -109692010 + AluY SINE Alu 1 308 -3 310 180 0 0 chr11 41092716 41092777 -109690776 - L1MB1 LINE L1 0 6168 6108 252 224 0 0 chr11 41092776 41092834 -109690719 + L1M2 LINE L1 5827 5884 -428 * 265 348 51 22 chr11 41093799 41093937 -109689616 - MIR SINE MIR -71 191 50 5851 230 29 16 chr11 41094005 41095828 -109687725 - L1MB3 LINE L1 -7 6412 4549 3309 73 77 4 chr11 41095828 41096293 -109687260 - L1PA6 LINE L1 -4 6150 5652 5851 230 29 16 chr11 41096293 41096959 -109686594 - L1MB3 LINE L1 -1870 4549 3893 1395 260 17 3 chr11 41096963 41097309 -109686244 - MLT1A1 LTR MaLR 0 365 15 9116 220 68 40 chr11 41097410 41098255 -109685298 - L1MB3 LINE L1 -2569 3813 2994 1551 84 4 26 chr11 41098255 41098481 -109685072 + L1PA8 LINE L1 5949 6169 -3 9116 220 68 40 chr11 41098481 41100451 -109683102 - L1MB3 LINE L1 -3388 2994 862 1223 280 14 19 chr11 41100451 41100815 -109682738 + MLT1A1 LTR MaLR 4 365 0 9116 220 68 40 chr11 41100815 41101702 -109681851 - L1MB3 LINE L1 -5520 862 2 22 0 0 0 chr11 41102413 41102435 -109681118 + AT_rich Low_complexity Low_complexity 1 22 0 725 243 61 116 chr11 41102463 41102647 -109680906 + MLT2C1 LTR ERVL 1 157 -240 13832 44 13 0 chr11 41102647 41105134 -109678419 - L1PA4 LINE L1 -2 6153 3642 725 243 61 116 chr11 41105134 41105311 -109678242 + MLT2C1 LTR ERVL 157 342 -55 21 71 0 0 chr11 41105465 41105507 -109678046 + AT_rich Low_complexity Low_complexity 1 42 0 371 184 40 17 chr11 41105554 41105728 -109677825 + (TA)n Simple_repeat Simple_repeat 2 179 0 212 247 24 35 chr11 41105729 41105814 -109677739 + (CATATA)n Simple_repeat Simple_repeat 1 84 0 309 250 9 19 chr11 41106007 41106115 -109677438 + (TA)n Simple_repeat Simple_repeat 1 107 0 21 36 0 0 chr11 41106188 41106216 -109677337 + AT_rich Low_complexity Low_complexity 1 28 0 5332 212 43 15 chr11 41106365 41110287 -109673266 + L1MA9 LINE L1 1 3481 -2722 2013 244 10 0 chr11 41110292 41110801 -109672752 + L1MA9 LINE L1 4628 5141 -1062 2279 271 12 19 chr11 41110805 41111577 -109671976 + L1MB7 LINE L1 4540 5305 -841 1359 144 26 91 chr11 41111577 41111917 -109671636 + L1MA9 LINE L1 5994 6311 -1 * 1575 205 114 16 chr11 41111915 41112641 -109670912 + L1MB7 LINE L1 5319 6120 -64 7671 147 9 11 chr11 41112642 41113791 -109669762 + HSMAR2 DNA Mariner 2 1149 -153 2075 112 10 13 chr11 41113791 41114103 -109669450 - AluSp SINE Alu -2 311 1 7671 147 9 11 chr11 41114103 41114253 -109669300 + HSMAR2 DNA Mariner 1149 1298 -4 2230 77 3 10 chr11 41114279 41114576 -109668977 + AluSx SINE Alu 3 297 -15 2774 198 53 36 chr11 41114576 41114992 -109668561 + L1MA9 LINE L1 5167 5575 -794 2378 155 23 35 chr11 41114992 41115383 -109668170 + MSTA LTR MaLR 1 389 -39 2072 106 3 0 chr11 41115383 41115708 -109667845 - AluY SINE Alu 0 326 1 2378 155 23 35 chr11 41115708 41115748 -109667805 + MSTA LTR MaLR 389 428 0 2774 198 53 36 chr11 41115748 41116194 -109667359 + L1MA9 LINE L1 5575 6044 -325 3989 102 13 2 chr11 41116198 41116755 -109666798 - HERVL-A1 LTR ERVL -702 4952 4390 558 99 176 0 chr11 41116861 41116883 -109666670 - MLT2A1 LTR ERVL -18 426 409 365 86 17 0 chr11 41116883 41116941 -109666612 + (TA)n Simple_repeat Simple_repeat 2 60 0 558 99 176 0 chr11 41116941 41117009 -109666544 - MLT2A1 LTR ERVL -35 409 320 31451 97 8 0 chr11 41117011 41121278 -109662275 - HERVL-A1 LTR ERVL -1354 4300 1 2767 107 42 7 chr11 41121278 41121707 -109661846 - MLT2A1 LTR ERVL 0 444 1 22 94 0 0 chr11 41121833 41121897 -109661656 + AT_rich Low_complexity Low_complexity 1 64 0 1686 50 4 38 chr11 41122404 41122642 -109660911 - L1PA5 LINE L1 0 6154 5925 321 68 0 0 chr11 41122850 41122894 -109660659 + (CA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chr11 41123207 41123229 -109660324 + AT_rich Low_complexity Low_complexity 1 22 0 230 20 41 41 chr11 41124791 41124840 -109658713 + (TTA)n Simple_repeat Simple_repeat 3 51 0 2184 148 8 16 chr11 41125833 41126211 -109657342 - L1PA16 LINE L1 -9 6157 5783 477 43 64 43 chr11 41126222 41126363 -109657190 + (TA)n Simple_repeat Simple_repeat 2 145 0 250 153 0 17 chr11 41126368 41126427 -109657126 + LTR66 LTR ERVL 407 464 -146 384 129 0 4 chr11 41126427 41126489 -109657064 - L1PA16 LINE L1 -409 5752 5693 30 45 0 0 chr11 41128229 41128273 -109655280 + AT_rich Low_complexity Low_complexity 1 44 0 5229 153 6 3 chr11 41128275 41129145 -109654408 + L1PA16 LINE L1 5290 6161 -5 2174 89 0 0 chr11 41131169 41131450 -109652103 + AluSq SINE Alu 1 281 -32 381 356 80 5 chr11 41132787 41132975 -109650578 + MIR3 SINE MIR 6 207 -1 189 333 28 62 chr11 41133048 41133192 -109650361 + MIR SINE MIR 51 189 -73 416 335 24 0 chr11 41133971 41134135 -109649418 + MIR SINE MIR 91 258 -4 702 192 7 112 chr11 41134135 41134351 -109649202 + L1PB4 LINE L1 5969 6162 -4 2075 135 3 3 chr11 41134409 41134721 -109648832 - AluSx SINE Alu 0 312 1 210 354 0 68 chr11 41134931 41135092 -109648461 - L2 LINE L2 -233 3039 2890 215 178 22 0 chr11 41137184 41137229 -109646324 + (TA)n Simple_repeat Simple_repeat 2 47 0 345 230 22 65 chr11 41137914 41138029 -109645524 + MER5A DNA MER1_type 4 112 -77 388 275 64 35 chr11 41138270 41138378 -109645175 + MER5B DNA MER1_type 1 117 -61 693 36 0 0 chr11 41138378 41138462 -109645091 + (TA)n Simple_repeat Simple_repeat 2 85 0 388 275 64 35 chr11 41138462 41138524 -109645029 + MER5B DNA MER1_type 117 176 -2 2383 264 72 15 chr11 41138865 41139801 -109643752 - L1M4 LINE L1 -1947 4199 3211 501 222 0 0 chr11 41139805 41139913 -109643640 - L1MCa LINE L1 -4604 1822 1715 189 0 0 0 chr11 41140896 41140917 -109642636 + (CA)n Simple_repeat Simple_repeat 2 22 0 237 356 94 6 chr11 41140979 41141139 -109642414 - MIR SINE MIR -11 251 78 488 339 44 32 chr11 41141310 41141558 -109641995 + MIR SINE MIR 6 256 -6 319 305 57 0 chr11 41141601 41141706 -109641847 - MIR SINE MIR -80 182 72 591 265 22 16 chr11 41141764 41141949 -109641604 + MER5A DNA MER1_type 4 189 0 387 0 0 0 chr11 41142120 41142163 -109641390 + (TG)n Simple_repeat Simple_repeat 2 44 0 1789 158 13 3 chr11 41143310 41143613 -109639940 + AluJo SINE Alu 1 306 -6 3794 210 41 15 chr11 41143751 41144637 -109638916 - L1MB5 LINE L1 -9 6165 5257 249 261 31 15 chr11 41144683 41144748 -109638805 - MIR SINE MIR -82 126 61 189 0 0 0 chr11 41144906 41144927 -109638626 + (TC)n Simple_repeat Simple_repeat 2 22 0 209 270 54 14 chr11 41145019 41145093 -109638460 + MIR SINE MIR 156 232 -30 6394 166 37 13 chr11 41145213 41146482 -109637071 + HSMAR2 DNA Mariner 1 1300 -2 340 195 51 102 chr11 41146532 41146650 -109636903 + L2 LINE L2 3167 3278 -35 224 313 18 13 chr11 41146721 41146836 -109636717 - MIR SINE MIR -59 203 88 1767 135 4 0 chr11 41147346 41147606 -109635947 - AluSq SINE Alu -18 295 35 200 294 11 87 chr11 41147701 41147793 -109635760 + MIR SINE MIR 67 151 -57 377 325 110 26 chr11 41148634 41148760 -109634793 - L1ME LINE L1 -362 5808 5694 7011 61 0 4 chr11 41148760 41149743 -109633810 - L1PA7 LINE L1 0 6154 5174 377 325 110 26 chr11 41149743 41149924 -109633629 - L1ME LINE L1 -476 5694 5475 207 64 85 21 chr11 41151274 41151321 -109632232 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 257 135 19 0 chr11 41151332 41151384 -109632169 + CT-rich Low_complexity Low_complexity 2 54 0 23 33 0 0 chr11 41152284 41152314 -109631239 + AT_rich Low_complexity Low_complexity 1 30 0 248 273 0 11 chr11 41152359 41152447 -109631106 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 725 240 10 51 chr11 41153941 41154137 -109629416 + MLT1A1 LTR MaLR 6 193 -172 941 219 41 0 chr11 41154147 41154343 -109629210 + MLT1A1 LTR MaLR 162 365 0 22 56 0 0 chr11 41154404 41154440 -109629113 + AT_rich Low_complexity Low_complexity 1 36 0 234 105 0 0 chr11 41154593 41154631 -109628922 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 499 205 168 26 chr11 41154653 41154843 -109628710 + L1MD3 LINE L1 6702 6918 -1077 530 308 85 5 chr11 41155064 41155288 -109628265 + L1ME LINE L1 290 531 -5539 213 94 0 0 chr11 41155293 41155325 -109628228 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 196 143 36 0 chr11 41155377 41155433 -109628120 + (TA)n Simple_repeat Simple_repeat 1 58 0 281 346 0 7 chr11 41155659 41155812 -109627741 + L1M4 LINE L1 3425 3576 -2570 387 116 0 158 chr11 41156210 41156305 -109627248 + MADE1 DNA Mariner 1 80 0 228 35 0 0 chr11 41157301 41157330 -109626223 + (TG)n Simple_repeat Simple_repeat 2 30 0 199 288 119 51 chr11 41157909 41158027 -109625526 - MIR SINE MIR -63 145 20 406 297 74 40 chr11 41158511 41158713 -109624840 + L2 LINE L2 3008 3216 -97 1757 208 75 2 chr11 41158808 41159207 -109624346 - MSTA LTR MaLR 0 428 1 4488 231 44 20 chr11 41159214 41160268 -109623285 - MSTA-int LTR MaLR -58 1593 515 1410 135 153 72 chr11 41160268 41160615 -109622938 - THE1C LTR MaLR 0 375 1 2664 173 42 0 chr11 41160615 41161112 -109622441 - MSTA-int LTR MaLR -1132 519 2 1777 182 103 5 chr11 41161113 41161503 -109622050 - MSTA LTR MaLR 0 428 1 408 118 0 0 chr11 41161761 41161829 -109621724 + (CA)n Simple_repeat Simple_repeat 1 68 0 26 64 0 0 chr11 41162705 41162752 -109620801 + AT_rich Low_complexity Low_complexity 1 47 0 3759 71 4 0 chr11 41162916 41163410 -109620143 - L1PA8 LINE L1 -2 6170 5675 21 71 0 0 chr11 41163477 41163519 -109620034 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr11 41164582 41164612 -109618941 + AT_rich Low_complexity Low_complexity 1 30 0 255 266 101 9 chr11 41167568 41167677 -109615876 + LTR67 LTR ERVL 437 555 -2 331 321 75 21 chr11 41168910 41169097 -109614456 + MER115 DNA AcHobo 45 241 -452 289 293 40 0 chr11 41169318 41169417 -109614136 + MER115 DNA AcHobo 590 692 -1 25 0 0 0 chr11 41170008 41170033 -109613520 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr11 41170211 41170239 -109613314 + AT_rich Low_complexity Low_complexity 1 28 0 322 322 29 29 chr11 41170324 41170498 -109613055 - L1ME LINE L1 -418 5703 5530 2145 83 37 7 chr11 41170500 41170800 -109612753 - AluSg1 SINE Alu 0 309 1 440 277 118 46 chr11 41171883 41172121 -109611432 - MIR SINE MIR -5 257 3 230 367 34 51 chr11 41172222 41172399 -109611154 - MIR3 SINE MIR -1 207 34 2820 33 0 0 chr11 41172866 41173196 -109610357 + L1PA4 LINE L1 5763 6092 -63 399 324 65 37 chr11 41173874 41174195 -109609358 + L1ME4a LINE L1 5637 5966 -155 225 299 287 6 chr11 41175705 41175862 -109607691 - MIR SINE MIR -56 206 6 353 331 28 14 chr11 41175944 41176089 -109607464 + L2 LINE L2 3167 3313 0 1665 222 14 3 chr11 41176585 41176946 -109606607 - MLT1A1 LTR MaLR 0 365 1 983 212 73 40 chr11 41177502 41177555 -109605998 + MLT1C LTR MaLR 36 86 -381 1870 156 0 10 chr11 41177555 41177882 -109605671 + AluSx SINE Alu 1 312 0 983 212 73 40 chr11 41177882 41178102 -109605451 + MLT1C LTR MaLR 86 318 -149 1542 217 35 16 chr11 41178155 41178563 -109604990 + MER61D LTR ERV1 14 501 0 552 196 0 48 chr11 41178576 41178605 -109604948 + MLT1B LTR MaLR 277 306 -84 5567 93 22 4 chr11 41178605 41179371 -109604182 - LTR17 LTR ERV1 0 780 1 552 196 0 48 chr11 41179371 41179490 -109604063 + MLT1B LTR MaLR 306 390 0 335 309 109 38 chr11 41179902 41180112 -109603441 - MIR SINE MIR -17 245 21 346 252 117 9 chr11 41180991 41181102 -109602451 + MIR SINE MIR 14 136 -126 237 65 0 0 chr11 41181367 41181398 -109602155 + (TTA)n Simple_repeat Simple_repeat 1 31 0 392 0 21 0 chr11 41182912 41182960 -109600593 + (CA)n Simple_repeat Simple_repeat 1 49 0 283 251 17 84 chr11 41183596 41183775 -109599778 - L1MC5 LINE L1 -186 7775 7609 22 0 0 0 chr11 41183814 41183836 -109599717 + AT_rich Low_complexity Low_complexity 1 22 0 1112 186 15 0 chr11 41184497 41184696 -109598857 - AluJo SINE Alu -56 256 55 4768 130 35 14 chr11 41184699 41185463 -109598090 + LTR17 LTR ERV1 1 780 0 4803 117 3 23 chr11 41185463 41186167 -109597386 + HERV17 LTR ERV1 2 691 -7935 7642 67 1 4 chr11 41186398 41187360 -109596193 + HERV17 LTR ERV1 1056 2014 -6612 * 10063 64 21 18 chr11 41187345 41188666 -109594887 + HERV17 LTR ERV1 2430 3754 -4872 4871 52 2 3 chr11 41188645 41189258 -109594295 + HERV17 LTR ERV1 5405 6016 -2610 * 2266 78 0 3 chr11 41189283 41189576 -109593977 + HERV17 LTR ERV1 8335 8626 0 4982 132 17 10 chr11 41189576 41190351 -109593202 + LTR17 LTR ERV1 1 780 0 1744 163 36 39 chr11 41190475 41190812 -109592741 - MER1B DNA MER1_type -1 336 1 339 226 2 0 chr11 41191053 41191150 -109592403 - L1MA8 LINE L1 -2 6289 6192 658 299 57 15 chr11 41191173 41191631 -109591922 - L1M4 LINE L1 -2938 3706 3230 2304 160 65 0 chr11 41191633 41192032 -109591521 - MSTB LTR MaLR -1 425 1 459 283 78 37 chr11 41192121 41192555 -109590998 - L1M4 LINE L1 -3630 3014 2605 312 324 7 29 chr11 41192698 41192837 -109590716 - L1M4 LINE L1 -4411 2414 2279 389 290 58 64 chr11 41192879 41193334 -109590219 - L1M4 LINE L1 -4755 2070 1473 1777 209 78 18 chr11 41193434 41193922 -109589631 - L1MD3 LINE L1 -82 7913 7397 237 257 54 0 chr11 41193931 41194005 -109589548 + MLT1G1 LTR MaLR 502 579 -16 26 0 0 0 chr11 41195502 41195528 -109588025 + AT_rich Low_complexity Low_complexity 1 26 0 14281 137 15 30 chr11 41197768 41199504 -109584049 - Tigger1 DNA MER2_type -61 2357 668 1929 129 0 28 chr11 41199504 41199790 -109583763 - AluSg SINE Alu -30 280 3 14281 137 15 30 chr11 41199790 41200448 -109583105 - Tigger1 DNA MER2_type -1750 668 1 203 349 0 0 chr11 41200466 41200532 -109583021 - L2 LINE L2 -589 2725 2660 1577 200 10 3 chr11 41200626 41200926 -109582627 + AluJo SINE Alu 11 312 0 1197 278 119 21 chr11 41201142 41201613 -109581940 + MLT1F LTR MaLR 24 540 -2 380 346 147 21 chr11 41201638 41202120 -109581433 - L2 LINE L2 -962 2352 1810 542 220 30 0 chr11 41202670 41202770 -109580783 + Tigger3(Golem) DNA MER2_type 14 116 -2913 5826 158 77 13 chr11 41203349 41204493 -109579060 - Tigger3b DNA MER2_type -1 1230 14 22 35 0 0 chr11 41204590 41204619 -109578934 + AT_rich Low_complexity Low_complexity 1 29 0 1182 257 126 13 chr11 41204712 41205109 -109578444 - MLT1E2 LTR MaLR -74 552 111 2518 59 3 0 chr11 41207234 41207539 -109576014 + AluY SINE Alu 1 306 -5 268 292 100 17 chr11 41207883 41208003 -109575550 - MIR SINE MIR -25 237 108 1073 331 106 2 chr11 41209710 41210211 -109573342 - MLT1H1 LTR MaLR 0 555 3 3038 93 12 5 chr11 41210379 41210789 -109572764 + MLT2A2 LTR ERVL 1 413 -40 21 36 0 0 chr11 41210805 41210833 -109572720 + AT_rich Low_complexity Low_complexity 1 28 0 244 118 118 0 chr11 41210846 41210897 -109572656 + MLT2A2 LTR ERVL 397 453 0 31568 82 5 23 chr11 41210898 41215167 -109568386 + HERVL-A2 LTR ERVL 2 4195 -1459 1986 96 4 4 chr11 41216487 41216748 -109566805 - AluSg SINE Alu -37 273 13 2436 40 7 3 chr11 41217379 41217675 -109565878 - AluY SINE Alu -14 297 1 20908 192 26 39 chr11 41218213 41220892 -109562661 - L1MA3 LINE L1 -3 7721 5011 1172 61 17 17 chr11 41220892 41221072 -109562481 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 20908 192 26 39 chr11 41221072 41224439 -109559114 - L1MA3 LINE L1 -2713 5011 1797 2421 72 0 10 chr11 41224439 41224744 -109558809 - AluY SINE Alu -9 302 1 20908 192 26 39 chr11 41224744 41226506 -109557047 - L1MA3 LINE L1 -5927 1797 15 182 321 31 44 chr11 41228336 41228495 -109555058 - MIR SINE MIR 0 262 106 550 284 153 60 chr11 41229409 41229860 -109553693 + MLT1G1 LTR MaLR 90 582 -13 26 50 0 0 chr11 41231139 41231179 -109552374 + AT_rich Low_complexity Low_complexity 1 40 0 332 222 11 22 chr11 41231767 41231857 -109551696 + MER96B DNA MER1_type? 142 230 -187 2242 110 0 10 chr11 41232721 41233022 -109550531 + AluSc SINE Alu 1 298 -11 377 151 0 14 chr11 41233022 41233088 -109550465 + GA-rich Low_complexity Low_complexity 6 72 0 312 27 0 0 chr11 41233086 41233123 -109550430 + (TAA)n Simple_repeat Simple_repeat 2 38 0 * 526 205 20 73 chr11 41233123 41233274 -109550279 - MLT1C LTR MaLR -319 148 6 204 306 42 49 chr11 41234993 41235137 -109548416 - L2 LINE L2 -214 3058 2916 238 191 21 0 chr11 41236469 41236521 -109547032 + CT-rich Low_complexity Low_complexity 1 53 0 222 118 0 0 chr11 41236622 41236656 -109546897 + (TA)n Simple_repeat Simple_repeat 2 35 0 286 269 25 67 chr11 41237056 41237175 -109546378 - MIR SINE MIR -113 149 36 285 317 21 41 chr11 41237476 41237621 -109545932 + MIR SINE MIR 65 206 -56 197 365 58 29 chr11 41238713 41238817 -109544736 - MIR SINE MIR -60 148 42 301 291 34 122 chr11 41239952 41240189 -109543364 - MIR SINE MIR -4 258 43 241 304 13 13 chr11 41241846 41241925 -109541628 - MIR SINE MIR -5 257 179 499 313 55 0 chr11 41242215 41242378 -109541175 - MIR SINE MIR -70 192 21 21 0 0 0 chr11 41242870 41242891 -109540662 + AT_rich Low_complexity Low_complexity 1 21 0 32 57 0 0 chr11 41243573 41243626 -109539927 + AT_rich Low_complexity Low_complexity 1 53 0 1313 290 57 28 chr11 41243946 41244522 -109539031 - MLT1E LTR MaLR 0 593 1 777 209 0 19 chr11 41244647 41244805 -109538748 + FAM SINE Alu 9 163 -22 220 188 29 0 chr11 41244811 41244880 -109538673 + (TA)n Simple_repeat Simple_repeat 1 71 0 288 274 97 59 chr11 41245402 41245588 -109537965 + MIR SINE MIR 26 218 -44 332 360 25 50 chr11 41247666 41247905 -109535648 + MIR SINE MIR 14 246 -16 260 366 60 14 chr11 41247999 41248215 -109535338 - L3 LINE CR1 -271 1306 1081 260 252 0 19 chr11 41248503 41248606 -109534947 + L1MC4 LINE L1 6603 6703 -1339 244 107 54 0 chr11 41248561 41248617 -109534936 - L1MCa LINE L1 -4362 2064 2006 * 249 369 50 50 chr11 41248665 41248887 -109534666 - L3 LINE CR1 -752 825 604 1928 121 29 0 chr11 41248970 41249273 -109534280 - AluSx SINE Alu 0 313 3 242 351 149 5 chr11 41250138 41250326 -109533227 - MIR SINE MIR 0 262 48 3020 210 37 46 chr11 41250456 41251288 -109532265 - LTR1B LTR ERV1 -1 825 1 381 256 23 53 chr11 41251757 41251890 -109531663 - MLT1I LTR MaLR -6 403 275 416 231 8 43 chr11 41251959 41252076 -109531477 + MLT1I LTR MaLR 283 395 -14 232 313 89 18 chr11 41252136 41252248 -109531305 + MER5B DNA MER1_type 3 122 -56 307 335 180 27 chr11 41253499 41253872 -109529681 - L2 LINE L2 -67 3246 2817 * 458 331 97 32 chr11 41253843 41254121 -109529432 - L2 LINE L2 -1954 1360 1065 22 70 0 0 chr11 41254323 41254366 -109529187 + AT_rich Low_complexity Low_complexity 1 43 0 265 286 27 0 chr11 41254703 41254815 -109528738 + (TA)n Simple_repeat Simple_repeat 2 116 0 182 191 0 44 chr11 41254822 41254890 -109528663 + (CATATA)n Simple_repeat Simple_repeat 1 65 0 1815 187 12 52 chr11 41254937 41255269 -109528284 - MER31A LTR ERV1 -79 406 93 3408 147 7 89 chr11 41255269 41256022 -109527531 + LTR8 LTR ERV1 1 691 0 1815 187 12 52 chr11 41256022 41256112 -109527441 - MER31A LTR ERV1 -392 93 1 203 243 200 0 chr11 41256291 41256361 -109527192 + MIR SINE MIR 58 141 -121 313 229 26 20 chr11 41256772 41256925 -109526628 + CT-rich Low_complexity Low_complexity 3 156 0 205 182 0 0 chr11 41257114 41257158 -109526395 + T-rich Low_complexity Low_complexity 4 47 0 23 0 0 0 chr11 41257412 41257435 -109526118 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr11 41257671 41257726 -109525827 + AT_rich Low_complexity Low_complexity 1 55 0 2306 116 50 14 chr11 41258336 41258698 -109524855 + THE1C LTR MaLR 1 375 0 1371 167 147 0 chr11 41259945 41260203 -109523350 + AluSx SINE Alu 3 298 -4 1013 212 121 54 chr11 41260229 41260601 -109522952 - MER39 LTR ERV1 0 707 311 271 242 71 20 chr11 41262441 41262540 -109521013 + MLT1I LTR MaLR 296 399 -10 336 275 126 30 chr11 41264334 41264501 -109519052 + MER5A DNA MER1_type 7 189 0 183 315 74 0 chr11 41264501 41264555 -109518998 - L2 LINE L2 -19 3294 3237 342 298 196 0 chr11 41265989 41266157 -109517396 + MIR SINE MIR 51 251 -11 2151 73 21 3 chr11 41266166 41266452 -109517101 + AluY SINE Alu 1 291 -20 21 0 0 0 chr11 41266454 41266475 -109517078 + AT_rich Low_complexity Low_complexity 1 21 0 232 279 37 88 chr11 41267007 41267143 -109516410 + MIR SINE MIR 78 206 -56 196 313 12 24 chr11 41267699 41267782 -109515771 + MIR SINE MIR 181 262 0 377 238 96 136 chr11 41268115 41268742 -109514811 - L1MC5 LINE L1 -241 7720 7119 33 25 0 0 chr11 41268815 41268855 -109514698 + AT_rich Low_complexity Low_complexity 1 40 0 293 336 9 9 chr11 41269799 41269906 -109513647 - MIR SINE MIR -103 159 53 21 0 0 0 chr11 41271232 41271253 -109512300 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr11 41271736 41271768 -109511785 + AT_rich Low_complexity Low_complexity 1 32 0 243 0 0 0 chr11 41272087 41272114 -109511439 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 228 295 42 72 chr11 41272449 41272615 -109510938 - MIR SINE MIR -56 206 46 22 56 0 0 chr11 41272932 41272968 -109510585 + AT_rich Low_complexity Low_complexity 1 36 0 306 290 19 19 chr11 41272974 41273081 -109510472 + MIR SINE MIR 110 216 -46 231 36 0 0 chr11 41273223 41273251 -109510302 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1988 177 30 39 chr11 41273356 41273909 -109509644 + MLT2A2 LTR ERVL 1 554 0 23 108 0 0 chr11 41274479 41274572 -109508981 + AT_rich Low_complexity Low_complexity 1 93 0 215 30 0 30 chr11 41274913 41274946 -109508607 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 26 30 0 0 chr11 41275268 41275301 -109508252 + AT_rich Low_complexity Low_complexity 1 33 0 2058 124 0 3 chr11 41275480 41275770 -109507783 + AluSx SINE Alu 1 289 -23 4754 218 74 3 chr11 41275822 41276803 -109506750 + L1PA13 LINE L1 1 1051 -5736 3278 132 26 0 chr11 41276812 41277350 -109506203 + L1PA13 LINE L1 5601 6152 -11 328 275 38 71 chr11 41277399 41277610 -109505943 - L2 LINE L2 0 3313 3110 436 324 80 51 chr11 41277679 41278052 -109505501 - L2 LINE L2 -769 2545 2162 2663 96 0 0 chr11 41278539 41278894 -109504659 - THE1A LTR MaLR 0 355 1 11151 97 5 20 chr11 41278894 41280000 -109503553 - THE1A-int LTR MaLR 0 1580 504 2024 107 13 41 chr11 41280000 41280317 -109503236 - AluSg SINE Alu 0 310 3 11151 97 5 20 chr11 41280317 41280814 -109502739 - THE1A-int LTR MaLR -1076 504 1 2483 119 6 0 chr11 41280814 41281167 -109502386 - THE1A LTR MaLR 0 355 1 306 180 0 0 chr11 41281303 41281364 -109502189 + (CA)n Simple_repeat Simple_repeat 2 62 0 244 313 137 8 chr11 41281622 41281753 -109501800 - L2 LINE L2 -4 3268 3121 22 80 0 0 chr11 41281847 41281897 -109501656 + AT_rich Low_complexity Low_complexity 1 50 0 275 146 18 0 chr11 41282597 41282652 -109500901 + CT-rich Low_complexity Low_complexity 4 59 0 432 37 0 0 chr11 41282696 41282750 -109500803 + (CA)n Simple_repeat Simple_repeat 2 55 0 453 234 0 28 chr11 41284546 41284653 -109498900 + MER5A DNA MER1_type 3 106 -83 221 247 176 35 chr11 41285330 41285415 -109498138 + L2 LINE L2 3141 3237 -76 186 306 65 16 chr11 41285498 41285560 -109497993 + MIR SINE MIR 82 146 -62 350 255 20 10 chr11 41285570 41285668 -109497885 + MER89 LTR ERV1 1 99 -460 1556 196 30 24 chr11 41285710 41285916 -109497637 + MER89 LTR ERV1 226 436 -123 1737 202 33 25 chr11 41285916 41286278 -109497275 + MLT1A1 LTR MaLR 1 365 0 1556 196 30 24 chr11 41286278 41286403 -109497150 + MER89 LTR ERV1 436 559 0 1224 291 17 10 chr11 41286734 41287139 -109496414 + MER97c DNA MER1_type? 250 657 -433 566 110 65 160 chr11 41287148 41287348 -109496205 - MER53 DNA DNA 0 189 9 240 172 52 0 chr11 41287360 41287418 -109496135 + MER97a DNA MER1_type? 662 722 -172 4681 209 67 13 chr11 41287633 41289067 -109494486 + L1MC1 LINE L1 4820 6333 0 22 0 0 0 chr11 41289592 41289614 -109493939 + AT_rich Low_complexity Low_complexity 1 22 0 295 331 98 12 chr11 41290383 41290546 -109493007 - MIR SINE MIR -34 228 52 1102 234 20 31 chr11 41290548 41290899 -109492654 - LTR37A LTR ERV1 -2 424 78 280 280 20 0 chr11 41292494 41292594 -109490959 - L1MEc LINE L1 -4753 1643 1542 748 131 46 15 chr11 41293045 41293175 -109490378 - MER61E LTR ERV1 0 569 436 430 151 209 0 chr11 41293207 41293293 -109490260 - LTR25 LTR ERV1 -275 519 416 354 129 157 0 chr11 41293521 41293591 -109489962 - MER61E LTR ERV1 -484 85 5 330 304 89 18 chr11 41293640 41293808 -109489745 - L1ME LINE L1 -330 5791 5612 331 305 84 25 chr11 41293875 41294078 -109489475 - L1ME LINE L1 -2320 5488 5274 36 40 0 0 chr11 41294174 41294224 -109489329 + AT_rich Low_complexity Low_complexity 1 50 0 29 78 0 0 chr11 41294629 41294693 -109488860 + AT_rich Low_complexity Low_complexity 1 64 0 916 109 7 14 chr11 41294952 41295099 -109488454 + L1PA8 LINE L1 6026 6171 -1 624 163 65 20 chr11 41295546 41295699 -109487854 + MER53 DNA DNA 4 163 -26 11191 101 5 4 chr11 41295805 41298236 -109485317 - L1PA8 LINE L1 0 6172 3735 21 0 0 0 chr11 41299413 41299434 -109484119 + AT_rich Low_complexity Low_complexity 1 21 0 634 259 59 38 chr11 41299462 41299701 -109483852 - L1ME3A LINE L1 0 6170 5927 1609 221 2 86 chr11 41299714 41300170 -109483383 - MER34 LTR ERV1 0 542 125 523 317 123 4 chr11 41300262 41300489 -109483064 - L1ME3A LINE L1 -406 5764 5511 352 307 83 31 chr11 41300519 41300717 -109482836 - MIR SINE MIR -18 244 39 291 292 28 56 chr11 41300809 41300953 -109482600 - MIR SINE MIR -24 238 99 435 276 43 0 chr11 41301004 41301120 -109482433 + L2 LINE L2 3193 3313 0 206 400 43 9 chr11 41301399 41301514 -109482039 - L2 LINE L2 0 3272 3154 213 300 56 0 chr11 41301516 41301606 -109481947 + MIR SINE MIR 97 191 -71 189 0 0 0 chr11 41301866 41301887 -109481666 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 848 291 112 21 chr11 41301964 41302349 -109481204 - MER57B LTR ERV1 -5 429 10 202 306 71 31 chr11 41302893 41302991 -109480562 - L2 LINE L2 0 3272 3171 180 77 0 0 chr11 41303441 41303467 -109480086 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 39 95 0 0 chr11 41304928 41305044 -109478509 + AT_rich Low_complexity Low_complexity 1 116 0 663 209 0 31 chr11 41307663 41307792 -109475761 + FLAM_C SINE Alu 3 127 -16 506 299 125 20 chr11 41308053 41308501 -109475052 + L1M4 LINE L1 3798 4292 -1854 500 346 118 40 chr11 41308595 41309377 -109474176 + L1M4 LINE L1 4399 5241 -905 851 208 45 10 chr11 41309631 41309833 -109473720 - MLT1C LTR MaLR -2 465 257 29871 118 11 25 chr11 41310003 41316420 -109467133 - L1PA7 LINE L1 -66 6403 2 2102 171 3 3 chr11 41316474 41316836 -109466717 - THE1B LTR MaLR -2 362 1 9049 141 36 26 chr11 41316836 41318400 -109465153 - THE1C-int LTR MaLR 0 1580 1 2569 128 3 0 chr11 41318400 41318774 -109464779 - THE1C LTR MaLR 0 375 1 225 94 0 0 chr11 41318824 41318856 -109464697 + (A)n Simple_repeat Simple_repeat 1 32 0 1753 183 27 18 chr11 41319729 41320062 -109463491 - MER1B DNA MER1_type -1 336 1 826 209 45 25 chr11 41320475 41320676 -109462877 - MER3 DNA MER1_type -4 205 1 2096 106 7 0 chr11 41320997 41321290 -109462263 + AluSx SINE Alu 1 295 -17 491 185 7 74 chr11 41322593 41322728 -109460825 + MLT1E2 LTR MaLR 64 189 -437 3195 19 0 0 chr11 41322728 41323095 -109460458 + L1PA3 LINE L1 5644 6010 -145 12891 128 26 21 chr11 41323095 41324798 -109458755 - LOR1-int LTR ERV1 -3284 4836 3115 1829 169 6 28 chr11 41324798 41325117 -109458436 - AluJo SINE Alu 0 312 1 12891 128 26 21 chr11 41325117 41325647 -109457906 - LOR1-int LTR ERV1 -5005 3115 2590 2082 175 7 19 chr11 41325660 41326344 -109457209 - MER52A LTR ERV1 -374 1381 1 9522 143 21 23 chr11 41326344 41327983 -109455570 - LOR1a-int LTR ERV1 -6485 1635 1 2873 168 8 2 chr11 41327983 41328476 -109455077 - LOR1a LTR ERV1 0 497 2 22 35 0 0 chr11 41330317 41330346 -109453207 + AT_rich Low_complexity Low_complexity 1 29 0 53 69 0 0 chr11 41330562 41330664 -109452889 + AT_rich Low_complexity Low_complexity 1 102 0 194 299 93 10 chr11 41330947 41331044 -109452509 - L2 LINE L2 -1 3312 3208 8975 93 6 4 chr11 41331144 41332397 -109451156 - L1P LINE L1 -977 5169 3912 2570 14 0 0 chr11 41332397 41332693 -109450860 - L1PA2 LINE L1 0 6155 5860 8975 93 6 4 chr11 41332693 41332718 -109450835 - L1P LINE L1 -2234 3912 3889 8016 109 7 6 chr11 41332819 41334044 -109449509 - L1P LINE L1 -1445 4701 3475 274 229 0 0 chr11 41334044 41334105 -109449448 + MLT1E3 LTR MaLR 562 622 -2 691 289 47 8 chr11 41334149 41334384 -109449169 - MIR SINE MIR -5 257 14 220 207 11 35 chr11 41334775 41334862 -109448691 + T-rich Low_complexity Low_complexity 5 89 0 343 310 127 18 chr11 41335828 41336470 -109447083 + L1MEc LINE L1 830 1401 -4816 335 310 47 53 chr11 41336586 41336947 -109446606 + L1MEc LINE L1 1931 2289 -4107 345 47 0 0 chr11 41336948 41336991 -109446562 + (CA)n Simple_repeat Simple_repeat 1 43 0 868 208 72 65 chr11 41337286 41337579 -109445974 - MLT1D LTR MaLR 0 505 211 335 154 0 46 chr11 41339572 41339637 -109443916 + MER5B DNA MER1_type 9 70 -108 651 137 0 10 chr11 41340178 41340280 -109443273 - AluS SINE Alu -211 101 1 1905 150 12 18 chr11 41340285 41340624 -109442929 - L1MC1 LINE L1 0 6333 5997 3035 98 22 2 chr11 41341467 41341914 -109441639 + L1PA14 LINE L1 5706 6161 0 199 314 14 14 chr11 41342007 41342077 -109441476 + L2 LINE L2 3203 3272 0 416 331 77 17 chr11 41342124 41342411 -109441142 + L1ME4a LINE L1 5564 5867 -254 2080 122 0 3 chr11 41344104 41344398 -109439155 + AluSx SINE Alu 1 293 -19 1127 139 6 0 chr11 41345148 41345314 -109438239 - AluSx SINE Alu -25 287 121 955 138 0 0 chr11 41345929 41346059 -109437494 - AluSx SINE Alu -182 130 1 488 211 11 0 chr11 41346075 41346165 -109437388 - MLT1D LTR MaLR -414 91 1 393 227 167 51 chr11 41346192 41346408 -109437145 + L1MEc LINE L1 2716 2956 -3259 933 254 29 26 chr11 41346415 41346765 -109436788 - L1M4 LINE L1 -754 5392 5042 1509 170 64 36 chr11 41346780 41347036 -109436517 + MER44D DNA MER2_type 1 249 -2242 1953 156 19 26 chr11 41347036 41347414 -109436139 - THE1C LTR MaLR 0 375 1 1509 170 64 36 chr11 41347414 41347487 -109436066 + MER44D DNA MER2_type 249 609 0 1274 282 56 31 chr11 41347492 41348367 -109435186 - L1MDb LINE L1 -2140 4504 3608 668 285 64 31 chr11 41348400 41348789 -109434764 - L1MDb LINE L1 -3257 3387 2986 * 1001 273 104 52 chr11 41348786 41349857 -109433696 - L1MDb LINE L1 -3973 2671 1441 25 65 0 0 chr11 41349912 41349958 -109433595 + AT_rich Low_complexity Low_complexity 1 46 0 310 336 43 43 chr11 41349965 41350176 -109433377 - L1MDb LINE L1 -5421 1226 1016 344 40 20 0 chr11 41350580 41350630 -109432923 + (TG)n Simple_repeat Simple_repeat 2 52 0 310 301 16 47 chr11 41350681 41350874 -109432679 - L1MDb LINE L1 -6318 326 140 2990 156 6 6 chr11 41350923 41351418 -109432135 - LOR1a LTR ERV1 -2 495 1 675 81 0 0 chr11 41351420 41351507 -109432046 - LOR1a-int LTR ERV1 -3 8117 8031 * 20208 127 35 18 chr11 41351498 41354391 -109429162 - LOR1a-int LTR ERV1 -2048 6072 3109 1847 169 6 28 chr11 41354391 41354710 -109428843 - AluJo SINE Alu 0 312 1 20208 127 35 18 chr11 41354710 41355240 -109428313 - LOR1a-int LTR ERV1 -5011 3109 2590 2118 175 7 19 chr11 41355253 41355937 -109427616 - MER52A LTR ERV1 -374 1381 1 9479 143 21 23 chr11 41355937 41357576 -109425977 - LOR1a-int LTR ERV1 -6485 1635 1 2889 168 8 2 chr11 41357576 41358069 -109425484 - LOR1a LTR ERV1 0 497 2 22 35 0 0 chr11 41359910 41359939 -109423614 + AT_rich Low_complexity Low_complexity 1 29 0 53 69 0 0 chr11 41360155 41360257 -109423296 + AT_rich Low_complexity Low_complexity 1 102 0 190 299 93 10 chr11 41360540 41360637 -109422916 - L2 LINE L2 -1 3312 3208 9660 88 6 3 chr11 41360737 41361990 -109421563 - L1P LINE L1 -977 5169 3910 2583 14 0 0 chr11 41361990 41362286 -109421267 - L1PA2 LINE L1 0 6155 5860 9660 88 6 3 chr11 41362286 41362388 -109421165 - L1P LINE L1 -2236 3910 3810 229 171 0 0 chr11 41362716 41362757 -109420796 + 5S rRNA rRNA 2 42 -79 25 65 0 0 chr11 41362887 41362933 -109420620 + AT_rich Low_complexity Low_complexity 1 46 0 1938 146 27 3 chr11 41363160 41363455 -109420098 + AluSx SINE Alu 1 302 -10 336 256 44 11 chr11 41365207 41365297 -109418256 + MER5C DNA MER1_type 2 94 -230 426 203 40 0 chr11 41365475 41365623 -109417930 + GA-rich Low_complexity Low_complexity 1 154 0 218 341 32 8 chr11 41366096 41366219 -109417334 + L2 LINE L2 2453 2578 -736 13583 202 21 60 chr11 41367148 41370055 -109413498 + L1PA13 LINE L1 1 3019 -3795 1753 179 13 32 chr11 41370055 41370430 -109413123 - L1MB8 LINE L1 0 6178 5811 3102 63 2 0 chr11 41370430 41370816 -109412737 - L1PA7 LINE L1 -1 6153 5758 13583 202 21 60 chr11 41370816 41373075 -109410478 + L1PA13 LINE L1 3018 5363 -1451 2036 127 75 26 chr11 41373075 41373422 -109410131 - THE1B LTR MaLR 0 364 1 11333 105 2 0 chr11 41373422 41374999 -109408554 - THE1B-int LTR MaLR 0 1580 1 1884 156 79 15 chr11 41375001 41375341 -109408212 - THE1B LTR MaLR -2 362 1 13583 202 21 60 chr11 41375341 41377291 -109406262 + L1PA13 LINE L1 5363 6796 -18 1309 175 77 153 chr11 41377716 41378265 -109405288 + MER67D LTR ERV1 3 509 -5 1632 213 40 60 chr11 41379261 41379327 -109404226 - L1MB8 LINE L1 -869 5277 5211 459 0 0 0 chr11 41379327 41379378 -109404175 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2110 108 4 0 chr11 41379380 41379657 -109403896 - AluSc SINE Alu -29 280 3 1632 213 40 60 chr11 41379657 41379882 -109403671 - L1MB8 LINE L1 -936 5210 4996 1975 125 0 0 chr11 41379882 41380162 -109403391 - AluSg SINE Alu -30 280 1 1632 213 40 60 chr11 41380162 41380396 -109403157 - L1MB8 LINE L1 -1150 4996 4759 1363 188 6 72 chr11 41380412 41380757 -109402796 + L1MA10 LINE L1 6008 6329 -5 238 299 50 75 chr11 41380922 41380976 -109402577 + L1MC/D LINE L1 5533 5587 -2221 2459 53 7 3 chr11 41380976 41381276 -109402277 - AluY SINE Alu -10 301 1 238 299 50 75 chr11 41381276 41381462 -109402091 + L1MC/D LINE L1 5587 5767 -2041 487 351 120 20 chr11 41381748 41382297 -109401256 + L1M4 LINE L1 3352 3955 -2191 649 229 103 105 chr11 41382359 41382817 -109400736 - LTR37B LTR ERV1 -5 463 7 202 404 18 0 chr11 41383070 41383184 -109400369 + L2 LINE L2 3193 3308 -5 3296 130 12 17 chr11 41383831 41384053 -109399500 - L1M1 LINE L1 -507 5798 5576 7288 43 16 1 chr11 41384053 41384935 -109398618 + MER11D LTR ERVK 3 897 0 3296 130 12 17 chr11 41384935 41385461 -109398092 - L1M1 LINE L1 -729 5576 5054 1989 188 36 21 chr11 41385494 41385968 -109397585 + L1MA3 LINE L1 5824 6304 -1 523 80 0 0 chr11 41386117 41386192 -109397361 - Alu SINE Alu -1 311 237 426 182 27 9 chr11 41386367 41386477 -109397076 + CT-rich Low_complexity Low_complexity 4 115 0 1838 113 28 60 chr11 41386490 41386808 -109396745 - AluSq SINE Alu 0 313 6 763 250 52 24 chr11 41387232 41387444 -109396109 - MER20 DNA MER1_type -1 218 1 245 185 0 0 chr11 41388162 41388216 -109395337 + (TA)n Simple_repeat Simple_repeat 2 55 0 261 224 47 12 chr11 41388578 41388663 -109394890 - LTR37A LTR ERV1 -12 414 327 802 181 78 12 chr11 41388664 41388830 -109394723 + AluJb SINE Alu 136 312 0 245 262 139 32 chr11 41388878 41388936 -109394617 - LTR37A LTR ERV1 -114 312 262 3193 36 8 3 chr11 41388936 41389327 -109394226 + L1PA4 LINE L1 5763 6155 0 245 262 139 32 chr11 41389327 41389520 -109394033 - LTR37A LTR ERV1 -164 262 34 1618 86 14 9 chr11 41389665 41389885 -109393668 + AluSq SINE Alu 1 221 -92 209 139 23 0 chr11 41389885 41389928 -109393625 + A-rich Low_complexity Low_complexity 3 46 0 24 53 0 0 chr11 41390206 41390244 -109393309 + AT_rich Low_complexity Low_complexity 1 38 0 218 119 0 24 chr11 41390871 41390913 -109392640 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 570 247 73 17 chr11 41391872 41392050 -109391503 - MER69 DNA AcHobo -2302 224 37 21 0 0 0 chr11 41392238 41392259 -109391294 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 41393077 41393098 -109390455 + AT_rich Low_complexity Low_complexity 1 21 0 1095 121 81 0 chr11 41393532 41393705 -109389848 - AluSp SINE Alu -7 306 120 25 0 0 0 chr11 41393873 41393898 -109389655 + AT_rich Low_complexity Low_complexity 1 25 0 913 86 0 0 chr11 41393969 41394086 -109389467 - AluSp SINE Alu -196 117 1 2273 137 31 14 chr11 41395780 41396137 -109387416 + THE1B LTR MaLR 2 364 0 1361 220 3 25 chr11 41397931 41398217 -109385336 + AluJb SINE Alu 1 280 -32 197 306 27 63 chr11 41398741 41398852 -109384701 + MIR SINE MIR 74 180 -82 335 247 29 29 chr11 41399815 41399989 -109383564 + (TA)n Simple_repeat Simple_repeat 2 175 0 24 32 0 0 chr11 41400059 41400090 -109383463 + AT_rich Low_complexity Low_complexity 1 31 0 206 245 0 0 chr11 41400249 41400298 -109383255 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 262 214 153 20 chr11 41400777 41400875 -109382678 - L1ME4a LINE L1 -32 6089 5979 243 0 0 0 chr11 41401937 41401964 -109381589 + (CA)n Simple_repeat Simple_repeat 2 28 0 244 325 160 19 chr11 41402729 41402941 -109380612 - MLT1J LTR MaLR -44 467 226 180 111 0 0 chr11 41403074 41403101 -109380452 + (TGG)n Simple_repeat Simple_repeat 3 29 0 2275 95 3 29 chr11 41403128 41403443 -109380110 + AluSg SINE Alu 1 307 -3 274 271 34 25 chr11 41404193 41404311 -109379242 - MER103 DNA DNA -43 123 5 9481 158 24 39 chr11 41405939 41407782 -109375771 + Tigger1 DNA MER2_type 603 2418 0 2174 107 0 0 chr11 41408026 41408307 -109375246 - AluSq SINE Alu -32 281 1 215 59 0 29 chr11 41408359 41408393 -109375160 + (TATG)n Simple_repeat Simple_repeat 4 36 0 752 194 29 17 chr11 41408654 41408829 -109374724 + MER58A DNA MER1_type 42 218 -6 1145 314 63 57 chr11 41409072 41409703 -109373850 - MER115 DNA AcHobo -7 686 52 566 310 11 11 chr11 41409752 41409936 -109373617 + MER20 DNA MER1_type 32 215 -4 290 278 270 0 chr11 41409938 41410053 -109373500 + MER5A DNA MER1_type 44 189 0 18154 61 0 7 chr11 41410272 41412578 -109370975 + L1P LINE L1 2 2290 -3856 7420 33 2 0 chr11 41412579 41413764 -109369789 + L1PA3 LINE L1 4969 6162 0 25 0 0 0 chr11 41414662 41414687 -109368866 + AT_rich Low_complexity Low_complexity 1 25 0 732 181 14 0 chr11 41415528 41415666 -109367887 + FRAM SINE Alu 36 175 -1 22 56 0 0 chr11 41415858 41415894 -109367659 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr11 41416305 41416328 -109367225 + (CAA)n Simple_repeat Simple_repeat 2 24 0 403 215 19 19 chr11 41416759 41416866 -109366687 + FLAM_A SINE Alu 22 128 -5 23 0 0 0 chr11 41417203 41417226 -109366327 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr11 41417241 41417270 -109366283 + AT_rich Low_complexity Low_complexity 1 29 0 1830 342 99 17 chr11 41417744 41418959 -109364594 + L2 LINE L2 1781 3120 -193 3008 208 22 27 chr11 41418959 41419672 -109363881 - MER67C LTR ERV1 0 710 1 1830 342 99 17 chr11 41419672 41419878 -109363675 + L2 LINE L2 3120 3308 -5 35 41 0 0 chr11 41419878 41419927 -109363626 + AT_rich Low_complexity Low_complexity 1 49 0 757 285 0 0 chr11 41420013 41420185 -109363368 - FRAM SINE Alu -4 172 1 10011 75 13 1 chr11 41420196 41421505 -109362048 - L1P LINE L1 -4820 1326 2 2918 162 71 58 chr11 41421513 41421801 -109361752 - L1MC1 LINE L1 -66 6267 5984 1741 145 68 41 chr11 41421801 41422166 -109361387 - THE1C LTR MaLR 0 375 1 2918 162 71 58 chr11 41422166 41422585 -109360968 - L1MC1 LINE L1 -349 5984 5551 11316 229 38 23 chr11 41423914 41429158 -109354395 + L1PA16 LINE L1 783 6205 -18 690 242 1 7 chr11 41429163 41429327 -109354226 - L1MC/D LINE L1 -763 5570 5404 2356 101 3 0 chr11 41429412 41429718 -109353835 + AluSc SINE Alu 3 309 0 1580 234 8 66 chr11 41430894 41431382 -109352171 + MLT1C LTR MaLR 6 465 -2 304 306 127 19 chr11 41432333 41432490 -109351063 - MIR SINE MIR -68 194 21 40 21 0 0 chr11 41432509 41432556 -109350997 + AT_rich Low_complexity Low_complexity 1 47 0 1389 91 15 0 chr11 41434638 41434835 -109348718 + L1PA12 LINE L1 5969 6168 0 180 300 135 47 chr11 41434871 41435041 -109348512 - L2 LINE L2 -410 2904 2720 25 31 0 0 chr11 41436726 41436758 -109346795 + AT_rich Low_complexity Low_complexity 1 32 0 303 378 43 10 chr11 41437808 41438017 -109345536 + MIR SINE MIR 41 256 -6 270 299 0 0 chr11 41438248 41438325 -109345228 + MLT1J1 LTR MaLR 1 77 -369 284 265 66 53 chr11 41438350 41438501 -109345052 + MLT1J2 LTR MaLR 137 289 -161 1599 239 41 66 chr11 41438533 41439064 -109344489 + MLT1F LTR MaLR 25 542 0 1007 222 13 44 chr11 41439214 41439439 -109344114 - MER20 DNA MER1_type -1 218 1 221 221 163 35 chr11 41439469 41439555 -109343998 + MIR3 SINE MIR 73 169 -39 392 311 98 0 chr11 41440178 41440310 -109343243 + MIR SINE MIR 2 146 -116 264 250 50 0 chr11 41441055 41441135 -109342418 + LTR16A1 LTR ERVL 372 455 -2 414 70 0 0 chr11 41441384 41441441 -109342112 - L1PA8 LINE L1 -5 6167 6111 180 0 0 0 chr11 41441593 41441613 -109341940 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4451 195 75 29 chr11 41443602 41443967 -109339586 + L1MC3 LINE L1 6626 6973 -812 1830 138 67 28 chr11 41443967 41444328 -109339225 - THE1C LTR MaLR 0 375 1 4451 195 75 29 chr11 41444328 41445057 -109338496 + L1MC3 LINE L1 6973 7770 -15 22 35 0 0 chr11 41445062 41445091 -109338462 + AT_rich Low_complexity Low_complexity 1 29 0 2003 92 0 7 chr11 41445712 41445995 -109337558 + AluY SINE Alu 21 301 -10 1918 101 11 31 chr11 41446141 41446428 -109337125 + AluSq SINE Alu 1 281 -32 270 136 0 0 chr11 41446432 41446476 -109337077 + (TA)n Simple_repeat Simple_repeat 2 45 0 23 33 0 0 chr11 41446604 41446634 -109336919 + AT_rich Low_complexity Low_complexity 1 30 0 1090 188 0 0 chr11 41446648 41446834 -109336719 - L1PA16 LINE L1 -73 6093 5908 8259 203 31 45 chr11 41446837 41447944 -109335609 - L1PA16 LINE L1 -638 5528 4408 297 0 0 0 chr11 41447944 41447977 -109335576 + (TG)n Simple_repeat Simple_repeat 1 33 0 8259 203 31 45 chr11 41447977 41448177 -109335376 - L1PA16 LINE L1 -1758 4408 4207 2219 94 0 7 chr11 41448177 41448464 -109335089 - AluSg1 SINE Alu -24 285 1 8259 203 31 45 chr11 41448464 41449656 -109333897 - L1PA16 LINE L1 -1959 4207 3073 21 0 0 0 chr11 41450330 41450351 -109333202 + AT_rich Low_complexity Low_complexity 1 21 0 2240 98 0 0 chr11 41451035 41451330 -109332223 + AluSx SINE Alu 1 295 -17 353 257 28 9 chr11 41452076 41452185 -109331368 + MIR SINE MIR 106 216 -46 21 0 0 0 chr11 41452412 41452433 -109331120 + AT_rich Low_complexity Low_complexity 1 21 0 2057 151 119 8 chr11 41452675 41453060 -109330493 + MSTA LTR MaLR 1 428 0 21 36 0 0 chr11 41453676 41453704 -109329849 + AT_rich Low_complexity Low_complexity 1 28 0 260 306 117 17 chr11 41453812 41453992 -109329561 + MIR SINE MIR 6 203 -59 186 328 33 0 chr11 41455148 41455209 -109328344 + L2 LINE L2 2866 2928 -344 1991 121 14 0 chr11 41455730 41456019 -109327534 - AluSx SINE Alu -19 293 1 185 393 22 0 chr11 41456458 41456547 -109327006 + L2 LINE L2 2278 2368 -946 26 0 0 0 chr11 41457012 41457038 -109326515 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr11 41457083 41457120 -109326433 + AT_rich Low_complexity Low_complexity 1 37 0 30 27 0 0 chr11 41457323 41457360 -109326193 + AT_rich Low_complexity Low_complexity 1 37 0 4405 229 64 36 chr11 41457395 41459260 -109324293 - L1 LINE L1 -2776 4789 2977 522 0 0 0 chr11 41459260 41459318 -109324235 + (TG)n Simple_repeat Simple_repeat 2 59 0 4405 229 64 36 chr11 41459318 41459397 -109324156 - L1 LINE L1 -4588 2977 2902 2247 71 3 3 chr11 41459397 41459724 -109323829 - AluY SINE Alu 0 327 1 4405 229 64 36 chr11 41459724 41460458 -109323095 - L1 LINE L1 -4663 2902 2028 13953 186 57 21 chr11 41460479 41465193 -109318360 - L1PB1 LINE L1 -1 6866 2325 216 0 0 0 chr11 41465193 41465217 -109318336 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 13953 186 57 21 chr11 41465217 41465335 -109318218 - L1PB1 LINE L1 -4542 2325 2213 2075 86 65 0 chr11 41465335 41465613 -109317940 - AluSq SINE Alu -17 296 1 13953 186 57 21 chr11 41465613 41466790 -109316763 - L1PB1 LINE L1 -4654 2213 634 941 195 26 0 chr11 41466791 41466981 -109316572 - L1PB1 LINE L1 -6666 197 3 322 310 32 58 chr11 41466993 41467148 -109316405 - L1 LINE L1 -5541 2024 1874 25 0 0 0 chr11 41467407 41467432 -109316121 + AT_rich Low_complexity Low_complexity 1 25 0 1067 207 29 58 chr11 41467872 41468147 -109315406 - AluJo SINE Alu -24 288 22 354 291 152 7 chr11 41468303 41468454 -109315099 + MIR SINE MIR 88 260 -2 217 241 93 0 chr11 41468505 41468559 -109314994 + L2 LINE L2 3214 3272 0 29 28 0 0 chr11 41469482 41469518 -109314035 + AT_rich Low_complexity Low_complexity 1 36 0 253 372 90 6 chr11 41469827 41469983 -109313570 - MIR SINE MIR -91 171 3 230 341 12 0 chr11 41470006 41470091 -109313462 + GA-rich Low_complexity Low_complexity 2 87 0 30 0 0 0 chr11 41470612 41470642 -109312911 + AT_rich Low_complexity Low_complexity 1 30 0 1000 212 156 23 chr11 41470695 41470997 -109312556 - MER7A DNA MER2_type -6 340 1 309 279 136 7 chr11 41471007 41471147 -109312406 + L1ME4a LINE L1 5799 5956 -165 1690 180 35 12 chr11 41471705 41472044 -109311509 - L1PB4 LINE L1 -12 6144 5798 231 138 31 15 chr11 41472062 41472127 -109311426 + (TA)n Simple_repeat Simple_repeat 1 66 0 225 148 19 19 chr11 41472202 41472256 -109311297 + LTR66 LTR ERVL 386 439 -171 206 194 15 0 chr11 41472365 41472432 -109311121 + (TA)n Simple_repeat Simple_repeat 1 68 0 307 326 0 0 chr11 41472472 41472561 -109310992 - L1MC4 LINE L1 -1340 6702 6614 225 297 0 11 chr11 41472577 41472668 -109310885 + L1MC4 LINE L1 6614 6703 -1339 268 265 8 8 chr11 41472673 41472805 -109310748 + (TA)n Simple_repeat Simple_repeat 1 132 0 850 161 70 1 chr11 41473165 41473379 -109310174 - L1M2 LINE L1 -367 5789 5318 282 298 11 0 chr11 41473489 41473583 -109309970 + (TA)n Simple_repeat Simple_repeat 2 96 0 1720 211 18 0 chr11 41474089 41474430 -109309123 + MER7A DNA MER2_type 2 346 0 32 0 0 0 chr11 41474869 41474901 -109308652 + AT_rich Low_complexity Low_complexity 1 32 0 288 289 74 16 chr11 41475815 41475936 -109307617 + MIR SINE MIR 64 191 -71 288 230 106 6 chr11 41475982 41476112 -109307441 + MIR SINE MIR 104 248 -14 231 362 78 0 chr11 41476662 41476778 -109306775 - MIR3 SINE MIR -6 202 78 198 0 0 0 chr11 41477088 41477110 -109306443 + (CA)n Simple_repeat Simple_repeat 1 22 0 1614 116 22 25 chr11 41477314 41477591 -109305962 + HSMAR2 DNA Mariner 3 278 -1024 267 79 0 0 chr11 41477596 41477634 -109305919 + L1MA3 LINE L1 6166 6203 -102 232 132 0 0 chr11 41477601 41477639 -109305914 + L1MA4A LINE L1 6170 6207 -96 * 326 71 12 224 chr11 41477695 41477780 -109305773 + HSMAR2 DNA Mariner 271 337 -965 * 2380 149 7 12 chr11 41477776 41478184 -109305369 + HSMAR2 DNA Mariner 896 1301 -1 26 0 0 0 chr11 41478929 41478955 -109304598 + AT_rich Low_complexity Low_complexity 1 26 0 540 292 73 18 chr11 41479645 41479864 -109303689 + MIR SINE MIR 2 232 -30 330 269 70 39 chr11 41479871 41480128 -109303425 - L1ME LINE L1 -630 5532 5268 242 169 12 36 chr11 41480330 41480413 -109303140 + (TA)n Simple_repeat Simple_repeat 2 82 0 480 275 104 42 chr11 41480501 41480905 -109302648 - L1ME LINE L1 -1303 4843 4415 27 49 0 0 chr11 41481047 41481088 -109302465 + AT_rich Low_complexity Low_complexity 1 41 0 200 152 43 0 chr11 41481631 41481677 -109301876 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 1404 158 32 7 chr11 41481949 41482228 -109301325 + L1MA7 LINE L1 6000 6285 -6 430 273 10 83 chr11 41482618 41482657 -109300896 - HAL1 LINE L1 -193 2314 2274 1529 191 112 16 chr11 41482657 41483033 -109300520 + MLT2D LTR ERVL 3 414 0 430 273 10 83 chr11 41483033 41483093 -109300460 - HAL1 LINE L1 -233 2274 2211 1979 95 8 0 chr11 41483093 41483357 -109300196 - AluSp SINE Alu -47 266 1 430 273 10 83 chr11 41483357 41483556 -109299997 - HAL1 LINE L1 -296 2211 2037 318 359 28 56 chr11 41483641 41483928 -109299625 - LTR67 LTR ERVL -272 285 7 21 36 0 0 chr11 41484742 41484770 -109298783 + AT_rich Low_complexity Low_complexity 1 28 0 238 286 0 0 chr11 41485733 41485803 -109297750 + (TAA)n Simple_repeat Simple_repeat 1 70 0 1329 231 0 26 chr11 41486193 41486355 -109297198 - AluJo SINE Alu -17 295 143 2209 86 13 7 chr11 41486355 41486657 -109296896 - AluSq SINE Alu -9 304 1 1329 231 0 26 chr11 41486657 41486797 -109296756 - AluJo SINE Alu -169 143 1 23 0 0 0 chr11 41487145 41487168 -109296385 + AT_rich Low_complexity Low_complexity 1 23 0 641 342 136 10 chr11 41487990 41488559 -109294994 + L2 LINE L2 2662 3307 -6 1591 233 101 58 chr11 41489083 41489787 -109293766 + MER50 LTR ERV1 1 734 0 614 274 162 5 chr11 41489907 41490111 -109293442 - MIR SINE MIR -21 241 6 715 78 17 0 chr11 41490848 41490964 -109292589 + (TC)n Simple_repeat Simple_repeat 1 118 0 2275 144 23 0 chr11 41491205 41491559 -109291994 + THE1B LTR MaLR 3 364 0 207 306 83 0 chr11 41492174 41492246 -109291307 + L2 LINE L2 3173 3250 -22 221 363 59 10 chr11 41492567 41492669 -109290884 - L3b LINE CR1 -5 1578 1472 316 283 67 33 chr11 41492965 41493085 -109290468 - MLT1G1 LTR MaLR -44 551 428 2005 128 7 0 chr11 41493195 41493515 -109290038 - AluSx SINE Alu 0 322 1 247 268 24 12 chr11 41494930 41495012 -109288541 - MLT1H-int LTR MaLR -1284 87 5 411 291 84 103 chr11 41495016 41495491 -109288062 - MLT1H LTR MaLR 0 549 84 26 50 0 0 chr11 41495658 41495698 -109287855 + AT_rich Low_complexity Low_complexity 1 40 0 3056 101 12 2 chr11 41497015 41497439 -109286114 + MSTA LTR MaLR 1 428 0 293 353 45 0 chr11 41498241 41498374 -109285179 - MIR SINE MIR -56 206 68 439 222 7 111 chr11 41498786 41498930 -109284623 + L1MDa LINE L1 17 145 -6395 189 147 0 0 chr11 41498930 41498964 -109284589 + (GGA)n Simple_repeat Simple_repeat 3 36 0 366 271 14 32 chr11 41499024 41499252 -109284301 + CT-rich Low_complexity Low_complexity 1 224 0 243 0 0 0 chr11 41499736 41499763 -109283790 + (A)n Simple_repeat Simple_repeat 1 27 0 1962 129 3 32 chr11 41499775 41500085 -109283468 + AluSq SINE Alu 1 301 -12 263 227 45 0 chr11 41500086 41500174 -109283379 - L1MC4 LINE L1 -1339 6703 6612 453 94 35 0 chr11 41500174 41500259 -109283294 + (TA)n Simple_repeat Simple_repeat 1 88 0 21 36 0 0 chr11 41500360 41500388 -109283165 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr11 41500410 41500435 -109283118 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr11 41500788 41500813 -109282740 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr11 41500905 41500934 -109282619 + AT_rich Low_complexity Low_complexity 1 29 0 1552 0 0 0 chr11 41501073 41501240 -109282313 + AluYa5 SINE Alu 144 310 -1 1678 163 38 0 chr11 41501277 41501565 -109281988 - AluSx SINE Alu -13 299 1 247 200 20 0 chr11 41501575 41501625 -109281928 - L1MC/D LINE L1 -753 5591 5541 33 0 0 0 chr11 41501835 41501868 -109281685 + AT_rich Low_complexity Low_complexity 1 33 0 38 68 0 0 chr11 41502167 41502240 -109281313 + AT_rich Low_complexity Low_complexity 1 73 0 1804 157 7 0 chr11 41502476 41502756 -109280797 - AluJb SINE Alu -30 282 1 2082 92 3 11 chr11 41503493 41503777 -109279776 + AluSx SINE Alu 1 282 -30 1463 54 8 46 chr11 41504074 41504315 -109279238 + HERVK9 LTR ERVK 2555 2786 -3130 7226 73 8 11 chr11 41504315 41505267 -109278286 + HERVK9 LTR ERVK 3711 4660 -1256 507 164 53 26 chr11 41505297 41505449 -109278104 - L1PA5 LINE L1 -18 6136 5981 709 200 27 26 chr11 41505554 41505737 -109277816 - L1PB4 LINE L1 -190 5966 5783 228 131 33 16 chr11 41505740 41505801 -109277752 + (TA)n Simple_repeat Simple_repeat 1 62 0 294 164 0 0 chr11 41505885 41505940 -109277613 + (TA)n Simple_repeat Simple_repeat 1 55 0 182 179 18 0 chr11 41506039 41506095 -109277458 + (TA)n Simple_repeat Simple_repeat 2 58 0 315 287 37 0 chr11 41506118 41506226 -109277327 + (TATATG)n Simple_repeat Simple_repeat 1 112 0 261 341 96 7 chr11 41506873 41507008 -109276545 + L2 LINE L2 2058 2204 -1110 2092 137 3 0 chr11 41507008 41507307 -109276246 - AluSx SINE Alu -12 300 1 1603 164 19 61 chr11 41507321 41507499 -109276054 - AluJb SINE Alu -14 298 137 2220 104 3 0 chr11 41507499 41507797 -109275756 - AluSp SINE Alu -12 301 3 1603 164 19 61 chr11 41507797 41507929 -109275624 - AluJb SINE Alu -175 137 1 474 170 22 74 chr11 41508224 41508359 -109275194 + AluSp SINE Alu 1 128 -185 312 278 17 39 chr11 41509137 41509317 -109274236 + GA-rich Low_complexity Low_complexity 3 178 0 456 139 0 30 chr11 41509525 41509626 -109273927 + (GGA)n Simple_repeat Simple_repeat 1 98 0 1322 232 34 22 chr11 41509626 41509949 -109273604 + L1MDa LINE L1 116 442 -6098 776 234 33 120 chr11 41509949 41510458 -109273095 + MER4C LTR ERV1 1 465 0 974 293 173 49 chr11 41510463 41510694 -109272859 + L1MDa LINE L1 444 645 -5895 1976 127 0 35 chr11 41510694 41511010 -109272543 + AluSx SINE Alu 1 305 -7 974 293 173 49 chr11 41511010 41511269 -109272284 + L1MDa LINE L1 645 995 -5545 1116 208 56 28 chr11 41511324 41511608 -109271945 + MER67C LTR ERV1 108 399 -311 952 211 30 42 chr11 41511790 41511911 -109271642 + L1MDa LINE L1 1056 1177 -5363 3582 134 4 2 chr11 41511911 41512464 -109271089 - MER41A LTR ERV1 0 554 1 952 211 30 42 chr11 41512464 41512673 -109270880 + L1MDa LINE L1 1177 1382 -5158 991 227 78 13 chr11 41513087 41513474 -109270079 - MER113 DNA MER1_type? -75 446 35 1554 171 7 4 chr11 41514634 41514915 -109268638 + L1PA16 LINE L1 5885 6166 0 15398 100 8 0 chr11 41516438 41519470 -109264083 + L1PA7 LINE L1 3086 6147 -7 21 57 0 0 chr11 41519471 41519506 -109264047 + AT_rich Low_complexity Low_complexity 1 35 0 1122 199 74 12 chr11 41519934 41520190 -109263363 - MLT1A1 LTR MaLR 0 365 94 9266 161 18 11 chr11 41520191 41521797 -109261756 + Tigger1 DNA MER2_type 2 1619 -799 2155 180 19 15 chr11 41521797 41522208 -109261345 + Tigger1 DNA MER2_type 2006 2418 0 454 200 11 11 chr11 41522214 41522304 -109261249 - MLT1A1 LTR MaLR -284 90 1 33 43 0 0 chr11 41522707 41522754 -109260799 + AT_rich Low_complexity Low_complexity 1 47 0 458 143 0 0 chr11 41522811 41522902 -109260651 - L1MA4A LINE L1 -7 6296 6206 298 295 69 45 chr11 41523683 41524219 -109259334 - L1M4 LINE L1 -777 5369 4821 517 314 75 34 chr11 41524419 41524833 -109258720 - L1ME3A LINE L1 -75 6095 5665 24 67 0 0 chr11 41524951 41524996 -109258557 + AT_rich Low_complexity Low_complexity 1 45 0 28 95 0 0 chr11 41525081 41525165 -109258388 + AT_rich Low_complexity Low_complexity 1 84 0 8209 100 8 4 chr11 41525165 41525826 -109257727 - L1PA7 LINE L1 -13 6141 5484 2141 128 0 3 chr11 41525826 41526132 -109257421 - AluY SINE Alu -6 305 1 8209 100 8 4 chr11 41526132 41527459 -109256094 - L1PA7 LINE L1 -670 5484 4161 19006 136 18 88 chr11 41527460 41531471 -109252082 - L1PA7 LINE L1 -2409 3737 9 285 306 135 11 chr11 41531480 41531827 -109251726 - L1ME LINE L1 -4759 1502 1113 1326 231 24 10 chr11 41531898 41532196 -109251357 - AluJo SINE Alu 0 302 1 24 0 0 0 chr11 41532472 41532496 -109251057 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr11 41532706 41532730 -109250823 + AT_rich Low_complexity Low_complexity 1 24 0 30 59 0 0 chr11 41532769 41532820 -109250733 + AT_rich Low_complexity Low_complexity 1 51 0 1950 142 57 132 chr11 41532864 41533453 -109250100 - MLT2A2 LTR ERVL 0 554 1 769 245 31 43 chr11 41534115 41534566 -109248987 - L1ME LINE L1 -5034 1049 718 501 174 0 0 chr11 41534599 41534697 -109248856 + CT-rich Low_complexity Low_complexity 2 99 0 1565 165 140 13 chr11 41534762 41535155 -109248398 - L1MB8 LINE L1 -2 6176 5734 1944 73 0 25 chr11 41535650 41535924 -109247629 + AluY SINE Alu 35 301 -10 215 140 20 0 chr11 41535924 41535974 -109247579 + (TA)n Simple_repeat Simple_repeat 2 52 0 2094 100 48 0 chr11 41537294 41537583 -109245970 - AluSx SINE Alu -9 303 1 23 33 0 0 chr11 41537977 41538007 -109245546 + AT_rich Low_complexity Low_complexity 1 30 0 222 118 0 0 chr11 41538624 41538658 -109244895 + (A)n Simple_repeat Simple_repeat 1 34 0 22 35 0 0 chr11 41539599 41539628 -109243925 + AT_rich Low_complexity Low_complexity 1 29 0 2289 108 0 6 chr11 41539812 41540126 -109243427 + AluSx SINE Alu 1 312 0 7911 213 26 8 chr11 41540438 41543613 -109239940 - L1PA16 LINE L1 0 6166 2936 1957 118 0 65 chr11 41544376 41544698 -109238855 + AluSx SINE Alu 1 301 -11 38 39 0 0 chr11 41544775 41544827 -109238726 + AT_rich Low_complexity Low_complexity 1 52 0 1036 62 0 8 chr11 41545712 41545841 -109237712 - AluSq/x SINE Alu -184 128 1 21 0 0 0 chr11 41546114 41546135 -109237418 + AT_rich Low_complexity Low_complexity 1 21 0 1691 176 3 10 chr11 41547093 41547383 -109236170 - AluJb SINE Alu -24 288 1 22 0 0 0 chr11 41548554 41548576 -109234977 + AT_rich Low_complexity Low_complexity 1 22 0 2155 131 7 3 chr11 41549685 41549991 -109233562 - AluJb SINE Alu -5 307 1 1315 156 31 9 chr11 41549996 41550221 -109233332 - AluJo SINE Alu -24 288 59 286 229 60 24 chr11 41551450 41551533 -109232020 + L1MC5 LINE L1 7832 7917 -44 1868 105 0 87 chr11 41551535 41551682 -109231871 + AluSx SINE Alu 1 106 -206 2222 60 0 11 chr11 41551682 41551996 -109231557 + AluY SINE Alu 2 312 0 1868 105 0 87 chr11 41551996 41552181 -109231372 + AluSx SINE Alu 106 305 -7 1656 174 0 18 chr11 41552765 41553047 -109230506 + AluJo SINE Alu 12 288 -24 1250 186 68 24 chr11 41553209 41553457 -109230096 + AluJo SINE Alu 1 259 -53 1399 223 48 66 chr11 41553568 41554052 -109229501 + HAL1 LINE L1 1592 2066 -441 1159 176 50 9 chr11 41554234 41554455 -109229098 - MLT1D LTR MaLR -6 499 270 950 179 35 25 chr11 41554483 41554684 -109228869 - MLT1D LTR MaLR -302 203 1 1580 177 46 7 chr11 41554849 41555132 -109228421 + AluSx SINE Alu 1 294 -18 300 143 0 0 chr11 41555578 41555627 -109227926 - FLAM_A SINE Alu 0 133 85 1104 148 0 0 chr11 41556106 41556275 -109227278 + L1PA8 LINE L1 5993 6161 -11 6438 206 31 6 chr11 41556293 41558531 -109225022 + L1PA15 LINE L1 3888 6165 0 935 225 58 60 chr11 41558531 41558966 -109224587 - Looper DNA T2_type -1124 434 1 21 71 0 0 chr11 41559517 41559559 -109223994 + AT_rich Low_complexity Low_complexity 1 42 0 458 19 0 0 chr11 41560287 41560339 -109223214 + (TA)n Simple_repeat Simple_repeat 1 52 0 252 0 0 0 chr11 41560340 41560368 -109223185 + (T)n Simple_repeat Simple_repeat 1 28 0 224 359 51 17 chr11 41560997 41561114 -109222439 - MER5A DNA MER1_type 0 189 69 293 205 2 0 chr11 41561284 41561362 -109222191 + L1MA4A LINE L1 6219 6297 -5 2425 52 0 0 chr11 41561564 41561854 -109221699 - AluY SINE Alu -21 290 1 267 306 70 45 chr11 41562007 41562164 -109221389 + MIR SINE MIR 52 212 -50 233 293 0 13 chr11 41563127 41563202 -109220351 - L1MC5 LINE L1 -1178 6783 6710 273 174 28 76 chr11 41563927 41564071 -109219482 + (TTATA)n Simple_repeat Simple_repeat 5 141 0 211 337 22 11 chr11 41564087 41564179 -109219374 - MIR SINE MIR -140 122 30 2200 65 0 46 chr11 41564377 41564684 -109218869 - AluY SINE Alu -18 293 1 2155 124 0 0 chr11 41564994 41565301 -109218252 + AluSx SINE Alu 6 312 0 180 0 0 0 chr11 41566121 41566141 -109217412 + (TTA)n Simple_repeat Simple_repeat 3 22 0 16643 29 2 0 chr11 41566141 41568884 -109214669 - L1PA3 LINE L1 -18 6137 3391 4086 103 5 0 chr11 41569316 41569906 -109213647 - L1MA2 LINE L1 -9 6295 5703 881 210 0 6 chr11 41569907 41570083 -109213470 + L1P LINE L1 3707 3881 -2265 * 2102 60 4 0 chr11 41570082 41570350 -109213203 + L1PA8 LINE L1 5667 5935 -237 203 248 105 67 chr11 41571314 41571419 -109212134 - MIR3 SINE MIR -41 167 86 24 0 0 0 chr11 41571540 41571564 -109211989 + AT_rich Low_complexity Low_complexity 1 24 0 323 255 68 51 chr11 41572819 41573014 -109210539 + MLT1J LTR MaLR 28 262 -249 22 35 0 0 chr11 41573217 41573246 -109210307 + AT_rich Low_complexity Low_complexity 1 29 0 423 347 65 0 chr11 41573340 41573556 -109209997 - MIR SINE MIR -13 249 20 223 358 32 11 chr11 41573505 41573600 -109209953 + MIR SINE MIR 20 116 -146 * 213 326 184 23 chr11 41573722 41573983 -109209570 + L3 LINE CR1 1274 1576 -1 22 35 0 0 chr11 41574167 41574196 -109209357 + AT_rich Low_complexity Low_complexity 1 29 0 1020 225 0 14 chr11 41574250 41574463 -109209090 + MER6B DNA MER2_type 1 210 0 258 105 0 0 chr11 41575725 41575763 -109207790 + (TA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chr11 41576033 41576071 -109207482 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr11 41576345 41576367 -109207186 + AT_rich Low_complexity Low_complexity 1 22 0 3122 119 13 33 chr11 41577346 41577420 -109206133 - MER75 DNA T2_type -3 511 437 1866 137 4 0 chr11 41577420 41577691 -109205862 + AluSx SINE Alu 1 272 -40 201 39 0 0 chr11 41577691 41577717 -109205836 + (CA)n Simple_repeat Simple_repeat 2 27 0 3122 119 13 33 chr11 41577717 41578162 -109205391 - MER75 DNA T2_type -75 439 1 517 284 152 65 chr11 41578599 41579028 -109204525 + MLT1C LTR MaLR 1 466 -1 1460 171 4 0 chr11 41579584 41579842 -109203711 + L1MA7 LINE L1 5320 5578 -713 1024 168 15 0 chr11 41579842 41580035 -109203518 + L1MA7 LINE L1 6070 6275 -16 190 397 13 0 chr11 41580279 41580357 -109203196 + L2 LINE L2 1481 1559 -1755 21 0 0 0 chr11 41580530 41580551 -109203002 + AT_rich Low_complexity Low_complexity 1 21 0 218 256 75 75 chr11 41582146 41582279 -109201274 - MIR SINE MIR 0 262 130 1979 143 3 3 chr11 41583716 41584023 -109199530 - AluSg SINE Alu -3 307 1 396 0 0 0 chr11 41584049 41584093 -109199460 + (CA)n Simple_repeat Simple_repeat 1 44 0 321 345 39 20 chr11 41584128 41584331 -109199222 - L1MC4a LINE L1 -1894 5914 5708 31 58 0 0 chr11 41584674 41584726 -109198827 + AT_rich Low_complexity Low_complexity 1 52 0 1373 198 35 79 chr11 41584993 41585311 -109198242 + AluJb SINE Alu 3 306 -6 387 0 0 0 chr11 41585725 41585768 -109197785 + (CA)n Simple_repeat Simple_repeat 2 44 0 2281 69 3 7 chr11 41587487 41587790 -109195763 + AluY SINE Alu 1 302 -9 24 0 0 0 chr11 41588487 41588511 -109195042 + AT_rich Low_complexity Low_complexity 1 24 0 255 276 164 8 chr11 41588597 41588731 -109194822 - MIR SINE MIR -30 232 78 846 185 117 27 chr11 41589312 41589534 -109194019 - MER45B DNA AcHobo -86 954 713 828 265 91 81 chr11 41589740 41590406 -109193147 - MER45 DNA AcHobo -279 674 1 24 0 0 0 chr11 41591785 41591809 -109191744 + AT_rich Low_complexity Low_complexity 1 24 0 845 228 0 0 chr11 41592911 41593078 -109190475 - AluJb SINE Alu -11 301 135 306 228 150 16 chr11 41593877 41594004 -109189549 - Charlie8 DNA MER1_type -2201 216 73 334 286 41 41 chr11 41594102 41594343 -109189210 - L1ME3 LINE L1 -77 6085 5745 323 287 115 57 chr11 41594435 41594679 -109188874 + L1MC/D LINE L1 4697 4954 -1192 210 89 36 54 chr11 41594834 41594890 -109188663 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 227 335 84 49 chr11 41594951 41595154 -109188399 + L1MC/D LINE L1 5510 5719 -2089 1672 187 53 9 chr11 41595171 41595508 -109188045 - MLT1A1 LTR MaLR -2 363 12 237 308 0 0 chr11 41595517 41595582 -109187971 + L1MC/D LINE L1 5739 5803 -2005 506 292 86 18 chr11 41596064 41596375 -109187178 + L1ME LINE L1 5254 5586 -584 208 221 26 0 chr11 41596561 41596638 -109186915 + (TA)n Simple_repeat Simple_repeat 1 79 0 237 171 23 80 chr11 41596910 41596998 -109186555 + L1M2c LINE L1 1853 1933 -4786 5211 234 62 51 chr11 41597518 41597713 -109185840 + L1M2 LINE L1 9 200 -6011 5267 87 17 11 chr11 41597713 41598474 -109185079 - MER4E LTR ERV1 0 766 1 5211 234 62 51 chr11 41598474 41600299 -109183254 + L1M2 LINE L1 200 2039 -4172 492 97 0 0 chr11 41600340 41600412 -109183141 + Alu SINE Alu 220 291 -18 3549 210 47 38 chr11 41600539 41602072 -109181481 + L1M2 LINE L1 4304 5849 -527 2994 299 32 12 chr11 41602075 41603134 -109180419 + L1M2a LINE L1 11 948 -6220 * 3275 237 67 86 chr11 41603131 41603382 -109180171 + L1M2a LINE L1 2017 2271 -4896 771 186 0 0 chr11 41603382 41603506 -109180047 - FLAM_C SINE Alu -19 124 1 3275 237 67 86 chr11 41603506 41605260 -109178293 + L1M2a LINE L1 2271 4105 -3062 491 307 80 33 chr11 41605332 41605781 -109177772 - L1M1 LINE L1 -4114 3451 2982 4814 250 77 49 chr11 41605793 41607476 -109176077 - L1M1 LINE L1 -5118 2448 720 443 323 12 6 chr11 41607581 41607748 -109175805 + L1MEc LINE L1 111 278 -6118 454 296 63 39 chr11 41608117 41608323 -109175230 - MIR SINE MIR -3 259 49 186 256 67 22 chr11 41608923 41609013 -109174540 - L2 LINE L2 -1585 1729 1636 234 81 0 0 chr11 41609326 41609363 -109174190 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 1373 173 59 0 chr11 41609366 41609621 -109173932 - AluJb SINE Alu -5 307 38 1328 303 76 46 chr11 41610001 41611045 -109172508 + L2 LINE L2 2197 3311 -2 260 269 19 119 chr11 41611327 41611487 -109172066 + MLT1H LTR MaLR 406 549 0 34 89 0 0 chr11 41611883 41611973 -109171580 + AT_rich Low_complexity Low_complexity 1 90 0 2295 62 3 0 chr11 41612929 41613218 -109170335 + AluY SINE Alu 3 292 -19 185 323 75 11 chr11 41613834 41613927 -109169626 - L2 LINE L2 -67 3205 3107 218 331 69 15 chr11 41614092 41614222 -109169331 + MIR SINE MIR 94 230 -32 1792 107 0 11 chr11 41614222 41614492 -109169061 - AluSx SINE Alu -8 304 38 205 362 0 0 chr11 41615885 41615954 -109167599 + MIR SINE MIR 72 140 -122 1406 204 16 25 chr11 41615962 41616223 -109167330 + L1M4 LINE L1 5321 5580 -598 2139 102 0 16 chr11 41616223 41616528 -109167025 - AluSg SINE Alu -10 300 1 1406 204 16 25 chr11 41616528 41616580 -109166973 + L1M4 LINE L1 5580 5631 -547 26 0 0 0 chr11 41616793 41616819 -109166734 + AT_rich Low_complexity Low_complexity 1 26 0 1298 183 41 16 chr11 41617158 41617450 -109166103 - MER61B LTR ERV1 -28 396 5 617 206 127 42 chr11 41617610 41617799 -109165754 - MER3 DNA MER1_type 0 209 5 387 264 123 26 chr11 41618230 41618385 -109165168 - MIR SINE MIR -36 226 57 1735 172 0 43 chr11 41618987 41619313 -109164240 - AluSx SINE Alu 0 312 1 22 0 0 0 chr11 41619422 41619444 -109164109 + AT_rich Low_complexity Low_complexity 1 22 0 7758 19 0 0 chr11 41619807 41620909 -109162644 - L1PA2 LINE L1 -2 6153 5052 10332 25 1 0 chr11 41620909 41622130 -109161423 + L1PA2 LINE L1 3819 5040 -1106 184 306 82 12 chr11 41622248 41622333 -109161220 + MIR SINE MIR 121 211 -51 705 284 100 0 chr11 41622959 41623220 -109160333 + MLT1H LTR MaLR 12 298 -251 248 251 156 45 chr11 41623255 41623431 -109160122 + MLT1H LTR MaLR 332 527 -28 630 295 154 4 chr11 41623431 41623665 -109159888 - MLT1H LTR MaLR 0 549 281 326 309 38 60 chr11 41623735 41624288 -109159265 + L1MEc LINE L1 1213 1753 -4643 233 317 30 18 chr11 41624622 41624786 -109158767 + L1MEc LINE L1 2135 2300 -4096 2158 75 24 17 chr11 41624831 41625125 -109158428 + AluY SINE Alu 1 296 -15 377 294 24 29 chr11 41625208 41625378 -109158175 + L1MEc LINE L1 2368 2536 -3679 1981 140 32 57 chr11 41626007 41626379 -109157174 - THE1B LTR MaLR -1 363 1 11484 97 1 27 chr11 41626384 41628000 -109155553 - THE1B-int LTR MaLR -6 1574 1 2041 157 33 30 chr11 41628000 41628363 -109155190 - THE1B LTR MaLR 0 364 1 667 158 9 9 chr11 41628507 41628621 -109154932 + MLT1D LTR MaLR 1 114 -391 4189 109 15 0 chr11 41628621 41629237 -109154316 - L1PB1 LINE L1 -1 6150 5526 207 176 0 0 chr11 41629347 41629381 -109154172 + (CA)n Simple_repeat Simple_repeat 1 34 0 639 373 88 18 chr11 41630443 41630744 -109152809 + L2 LINE L2 2367 2645 -669 2111 73 38 14 chr11 41630744 41631032 -109152521 - AluY SINE Alu -16 295 1 639 373 88 18 chr11 41631032 41631301 -109152252 + L2 LINE L2 2645 2977 -337 243 337 169 0 chr11 41632240 41632406 -109151147 - L2 LINE L2 -246 3067 2874 2122 107 17 0 chr11 41632431 41632722 -109150831 - AluSp SINE Alu -17 296 1 1959 99 0 18 chr11 41632820 41633104 -109150449 - AluSc SINE Alu -4 305 27 474 208 0 0 chr11 41633204 41633305 -109150248 - L1MA9 LINE L1 -38 6274 6174 23 33 0 0 chr11 41633516 41633546 -109150007 + AT_rich Low_complexity Low_complexity 1 30 0 234 0 0 0 chr11 41633549 41633575 -109149978 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 340 64 0 0 chr11 41633581 41633628 -109149925 - L1PA3 LINE L1 -3 6152 6106 1716 169 10 3 chr11 41634567 41634863 -109148690 + AluSx SINE Alu 5 302 -10 32 75 0 0 chr11 41634975 41635042 -109148511 + AT_rich Low_complexity Low_complexity 1 67 0 210 213 21 0 chr11 41635793 41635840 -109147713 + A-rich Low_complexity Low_complexity 1 48 0 29 47 0 0 chr11 41635900 41635943 -109147610 + AT_rich Low_complexity Low_complexity 1 43 0 314 220 104 55 chr11 41636332 41636496 -109147057 + L1MC4a LINE L1 7347 7540 -268 394 271 36 70 chr11 41636771 41637052 -109146501 + L1MC4 LINE L1 7672 7933 -28 40 49 0 0 chr11 41637735 41637796 -109145757 + AT_rich Low_complexity Low_complexity 1 61 0 230 379 126 11 chr11 41638629 41638819 -109144734 + L3 LINE CR1 1088 1299 -278 29 47 0 0 chr11 41640427 41640470 -109143083 + AT_rich Low_complexity Low_complexity 1 43 0 1031 266 183 52 chr11 41640507 41641076 -109142477 + MLT1E2 LTR MaLR 1 565 -61 272 322 197 7 chr11 41641450 41641602 -109141951 - L2 LINE L2 -177 3136 2956 23 33 0 0 chr11 41641683 41641713 -109141840 + AT_rich Low_complexity Low_complexity 1 30 0 2780 13 0 6 chr11 41642571 41642888 -109140665 - AluYb8 SINE Alu -3 315 1 3191 150 16 69 chr11 41642896 41643561 -109139992 + L1PA16 LINE L1 5527 6156 -10 647 280 26 33 chr11 41643579 41643850 -109139703 + L1ME3A LINE L1 5894 6162 -8 906 144 11 8 chr11 41644433 41644699 -109138854 + CT-rich Low_complexity Low_complexity 1 267 0 2110 124 7 3 chr11 41644719 41645026 -109138527 - AluSx SINE Alu -4 308 1 192 200 0 0 chr11 41647186 41647236 -109136317 + (TA)n Simple_repeat Simple_repeat 1 50 0 419 306 94 55 chr11 41647340 41647615 -109135938 + MER102a DNA MER1_type 45 330 0 716 213 22 70 chr11 41647711 41647941 -109135612 + MER20 DNA MER1_type 1 219 0 23 78 0 0 chr11 41649158 41649209 -109134344 + AT_rich Low_complexity Low_complexity 1 51 0 2717 265 76 26 chr11 41649218 41650265 -109133288 + L1MC4 LINE L1 6459 7570 -472 2008 120 11 0 chr11 41650265 41650578 -109132975 + AluSp SINE Alu 1 316 0 2717 265 76 26 chr11 41650578 41650666 -109132887 + L1MC4 LINE L1 7570 7652 -390 22 88 0 0 chr11 41650732 41650789 -109132764 + AT_rich Low_complexity Low_complexity 1 57 0 264 196 39 0 chr11 41651190 41651241 -109132312 - LTR52 LTR ERVL -19 402 350 2558 256 87 9 chr11 41651243 41651912 -109131641 - HERVL74 LTR ERVL -2858 2827 2107 581 186 0 0 chr11 41652099 41652201 -109131352 - HERVL74 LTR ERVL -3587 2098 1997 15450 34 7 0 chr11 41652201 41654821 -109128732 + L1PA3 LINE L1 3523 6148 -7 568 268 200 17 chr11 41655301 41655536 -109128017 - HERVL74 LTR ERVL -3688 1997 1720 286 177 32 16 chr11 41655521 41655583 -109127970 + HERVL74 LTR ERVL 1216 1278 -4407 * 767 250 20 10 chr11 41655720 41655924 -109127629 - LTR52 LTR ERVL -41 380 175 618 270 32 1 chr11 41656356 41656532 -109127021 - MLT1-int LTR MaLR -773 598 403 21 0 0 0 chr11 41656655 41656676 -109126877 + AT_rich Low_complexity Low_complexity 1 21 0 275 374 31 31 chr11 41658290 41658453 -109125100 - MIR3 SINE MIR -23 185 23 340 313 17 0 chr11 41658713 41658828 -109124725 + MER5C DNA MER1_type 1 117 -207 27 0 0 0 chr11 41658988 41659015 -109124538 + AT_rich Low_complexity Low_complexity 1 27 0 1563 202 7 14 chr11 41660775 41661057 -109122496 + AluJo SINE Alu 1 280 -32 2579 149 45 8 chr11 41661078 41661548 -109122005 + L1MA4 LINE L1 5679 6165 -135 385 204 0 20 chr11 41661548 41661646 -109121907 + L1MA3 LINE L1 6209 6304 -1 1654 210 44 44 chr11 41663250 41663683 -109119870 + Tigger2a DNA MER2_type 1 433 -1 360 0 0 0 chr11 41663769 41663809 -109119744 + (CA)n Simple_repeat Simple_repeat 1 40 0 1291 246 120 54 chr11 41664792 41665552 -109118001 - L1M4 LINE L1 -2081 4065 3256 34 65 0 0 chr11 41667416 41667478 -109116075 + AT_rich Low_complexity Low_complexity 1 62 0 431 295 30 93 chr11 41667968 41668236 -109115317 - L2 LINE L2 -453 2861 2611 1233 147 13 38 chr11 41668603 41668841 -109114712 - AluY SINE Alu -79 232 1 1446 221 39 6 chr11 41668841 41669153 -109114400 + MLT1A1 LTR MaLR 44 365 0 934 222 7 7 chr11 41669824 41670099 -109113454 - AluSx SINE Alu 0 312 38 226 329 15 0 chr11 41670243 41670328 -109113225 - MIR SINE MIR -81 127 64 372 315 68 59 chr11 41671714 41672035 -109111518 + L2 LINE L2 2990 3313 0 2182 94 0 7 chr11 41672195 41672494 -109111059 - AluSx SINE Alu -15 297 1 472 349 35 15 chr11 41672564 41672762 -109110791 + MIR SINE MIR 17 218 -44 29 47 0 0 chr11 41672789 41672832 -109110721 + AT_rich Low_complexity Low_complexity 1 43 0 982 88 14 0 chr11 41673015 41673163 -109110390 - L1PA2 LINE L1 -1 6154 6005 416 252 68 58 chr11 41673874 41674080 -109109473 + L2 LINE L2 3106 3313 0 2146 95 0 7 chr11 41674244 41674539 -109109014 - AluSx SINE Alu -19 293 1 549 328 35 15 chr11 41674609 41674807 -109108746 + MIR SINE MIR 17 218 -44 29 47 0 0 chr11 41674834 41674877 -109108676 + AT_rich Low_complexity Low_complexity 1 43 0 3531 19 0 0 chr11 41675060 41675471 -109108082 - L1PA2 LINE L1 -1 6154 5744 1527 154 199 121 chr11 41675571 41676720 -109106833 + LTR12 LTR ERV1 481 2435 -3 665 207 0 0 chr11 41676720 41676855 -109106698 + L1MA6 LINE L1 4950 5084 -1062 344 206 0 0 chr11 41676856 41676924 -109106629 - AluY SINE Alu -5 297 230 1184 87 12 6 chr11 41676924 41677085 -109106468 - AluY SINE Alu -149 162 1 4452 176 46 33 chr11 41677085 41678289 -109105264 + L1MA6 LINE L1 5077 6299 -1 219 307 79 44 chr11 41679176 41679290 -109104263 + MIR SINE MIR 79 196 -66 269 243 291 10 chr11 41679538 41679641 -109103912 + L2 LINE L2 3137 3268 -4 218 337 56 11 chr11 41679813 41679902 -109103651 - L2 LINE L2 -33 3280 3188 368 323 64 18 chr11 41679951 41680171 -109103382 - MIR SINE MIR -13 249 20 1899 180 37 37 chr11 41680600 41681151 -109102402 - MLT2A2 LTR ERVL 0 554 1 3018 172 26 4 chr11 41681152 41682168 -109101385 - L1P4 LINE L1 -435 5731 4697 222 241 19 0 chr11 41682623 41682677 -109100876 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 33 43 0 0 chr11 41683415 41683462 -109100091 + AT_rich Low_complexity Low_complexity 1 47 0 243 0 0 0 chr11 41684197 41684224 -109099329 + (T)n Simple_repeat Simple_repeat 1 27 0 1513 204 31 45 chr11 41684406 41684448 -109099105 + MLT1A1 LTR MaLR 13 54 -311 2114 102 10 26 chr11 41684448 41684761 -109098792 - AluY SINE Alu -3 308 1 1513 204 31 45 chr11 41684761 41685076 -109098477 + MLT1A1 LTR MaLR 54 365 0 2115 125 3 0 chr11 41685751 41686062 -109097491 - AluSx SINE Alu 0 312 1 431 281 115 75 chr11 41686062 41686340 -109097213 + L2 LINE L2 3024 3312 -1 252 0 0 0 chr11 41686373 41686401 -109097152 + (CA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr11 41688192 41688214 -109095339 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 41688898 41688922 -109094631 + AT_rich Low_complexity Low_complexity 1 24 0 189 331 39 66 chr11 41691271 41691323 -109092230 - MIR SINE MIR -59 203 151 2643 22 3 6 chr11 41691323 41691641 -109091912 - AluYb8 SINE Alu -1 317 1 189 331 39 66 chr11 41691641 41691769 -109091784 - MIR SINE MIR -111 151 28 1150 195 91 26 chr11 41691881 41692188 -109091365 - L1MB7 LINE L1 -7 6177 5851 339 243 40 72 chr11 41692326 41692389 -109091164 + MER103 DNA DNA 17 81 -85 2229 79 0 0 chr11 41692389 41692679 -109090874 - AluSg SINE Alu -20 290 1 339 243 40 72 chr11 41692679 41692767 -109090786 + MER103 DNA DNA 81 163 -3 204 365 26 9 chr11 41692854 41692969 -109090584 + MIR SINE MIR 32 148 -114 2763 170 85 11 chr11 41693485 41694039 -109089514 - L1MB1 LINE L1 0 6168 5574 22 0 0 0 chr11 41694292 41694314 -109089239 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr11 41694659 41694708 -109088845 + AT_rich Low_complexity Low_complexity 1 49 0 499 267 79 41 chr11 41695043 41695309 -109088244 - L1ME3A LINE L1 0 6170 5895 665 297 134 18 chr11 41695333 41695842 -109087711 - L1ME3A LINE L1 -349 5821 5254 36 100 0 0 chr11 41696049 41696169 -109087384 + AT_rich Low_complexity Low_complexity 1 120 0 2221 206 62 52 chr11 41696197 41696550 -109087003 + L1MC3 LINE L1 6637 6985 -800 1982 138 42 33 chr11 41696550 41696911 -109086642 - THE1B LTR MaLR 0 364 1 10951 106 14 1 chr11 41696911 41698472 -109085081 - THE1B-int LTR MaLR 0 1580 1 2171 125 42 31 chr11 41698472 41698832 -109084721 - THE1B LTR MaLR 0 364 1 2221 206 62 52 chr11 41698832 41699088 -109084465 + L1MC3 LINE L1 6984 7254 -531 313 155 35 0 chr11 41699095 41699153 -109084400 + MSTA LTR MaLR 2 61 -367 551 328 25 20 chr11 41700886 41701090 -109082463 - MIR SINE MIR -16 246 42 22 35 0 0 chr11 41701629 41701658 -109081895 + AT_rich Low_complexity Low_complexity 1 29 0 2211 234 41 44 chr11 41701665 41701980 -109081573 + L1MA3 LINE L1 5365 5679 -626 2051 181 35 0 chr11 41701980 41702355 -109081198 - MLT1B LTR MaLR -2 388 1 2211 234 41 44 chr11 41702355 41702764 -109080789 + L1MA3 LINE L1 5679 6087 -218 1184 339 117 27 chr11 41702889 41703897 -109079656 + L2 LINE L2 237 1335 -1979 9251 253 27 21 chr11 41703978 41706528 -109077025 - L1PA12 LINE L1 -1337 5512 2900 2833 13 0 0 chr11 41706528 41706839 -109076714 + AluYa5 SINE Alu 1 311 0 9251 253 27 21 chr11 41706839 41708326 -109075227 - L1PA12 LINE L1 -3949 2900 1423 2126 130 3 9 chr11 41708454 41708769 -109074784 - AluSp SINE Alu 0 313 1 2404 194 2 11 chr11 41709066 41709515 -109074038 - L1PA12 LINE L1 -6404 445 1 348 347 38 45 chr11 41709774 41710187 -109073366 + L2 LINE L2 2227 2707 -607 512 285 51 73 chr11 41710496 41710770 -109072783 + L2 LINE L2 2611 2878 -436 34 65 0 0 chr11 41711254 41711316 -109072237 + AT_rich Low_complexity Low_complexity 1 62 0 347 277 58 36 chr11 41711689 41711826 -109071727 + L1MCb LINE L1 1040 1179 -4866 25 75 0 0 chr11 41712670 41712723 -109070830 + AT_rich Low_complexity Low_complexity 1 53 0 32 26 0 0 chr11 41712979 41713018 -109070535 + AT_rich Low_complexity Low_complexity 1 39 0 363 268 31 10 chr11 41713174 41713271 -109070282 - L2 LINE L2 -1 3312 3214 380 338 40 7 chr11 41713530 41713678 -109069875 - L2 LINE L2 -631 2683 2531 21 57 0 0 chr11 41713781 41713816 -109069737 + AT_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chr11 41713932 41713972 -109069581 + AT_rich Low_complexity Low_complexity 1 40 0 366 23 0 0 chr11 41714612 41714655 -109068898 + (TA)n Simple_repeat Simple_repeat 1 43 0 1014 132 7 0 chr11 41714687 41714839 -109068714 - AluSg/x SINE Alu -22 290 138 894 121 15 0 chr11 41714839 41714971 -109068582 + AluSq/x SINE Alu 7 140 -173 200 111 22 0 chr11 41715564 41715609 -109067944 + (AAATG)n Simple_repeat Simple_repeat 5 50 0 1760 218 33 0 chr11 41716206 41716568 -109066985 - MLT1B LTR MaLR -16 374 1 2154 175 82 13 chr11 41716569 41717059 -109066494 + L1MA3 LINE L1 5673 6198 -107 2375 90 0 0 chr11 41717087 41717388 -109066165 - AluY SINE Alu -10 301 1 592 272 45 48 chr11 41717401 41717691 -109065862 + L1ME1 LINE L1 5834 6122 -44 381 258 18 43 chr11 41717583 41717746 -109065807 + L1MA10 LINE L1 6175 6333 -1 * 1182 217 149 41 chr11 41718076 41718455 -109065098 - MLT1C LTR MaLR -7 460 33 216 0 0 0 chr11 41718455 41718479 -109065074 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1182 217 149 41 chr11 41718479 41718510 -109065043 - MLT1C LTR MaLR -434 33 7 1495 233 35 94 chr11 41718516 41719006 -109064547 - MLT1C-int LTR MaLR 0 1371 911 3408 230 30 32 chr11 41719149 41720031 -109063522 - MLT1C-int LTR MaLR -490 881 2 688 290 50 43 chr11 41720034 41720337 -109063216 - MLT1C LTR MaLR -2 465 161 22 0 0 0 chr11 41720538 41720560 -109062993 + AT_rich Low_complexity Low_complexity 1 22 0 545 212 88 15 chr11 41720632 41720769 -109062784 - MLT1C LTR MaLR -316 151 5 186 103 0 0 chr11 41721516 41721545 -109062008 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 258 216 57 11 chr11 41722116 41722204 -109061349 + L1ME LINE L1 5768 5859 -262 21 0 0 0 chr11 41722213 41722234 -109061319 + AT_rich Low_complexity Low_complexity 1 21 0 390 322 62 19 chr11 41722546 41722613 -109060940 - MIR SINE MIR -1 261 198 8504 106 24 26 chr11 41722613 41723902 -109059651 + HSMAR1 DNA Mariner 2 1287 0 390 322 62 19 chr11 41723902 41724045 -109059508 - MIR SINE MIR -64 198 42 195 204 0 0 chr11 41724212 41724256 -109059297 + (CA)n Simple_repeat Simple_repeat 1 44 0 616 147 133 20 chr11 41725000 41725150 -109058403 + L1MA8 LINE L1 6124 6290 -1 293 0 0 26 chr11 41725856 41725894 -109057659 + (TG)n Simple_repeat Simple_repeat 2 38 0 450 304 208 21 chr11 41726481 41726817 -109056736 + L2 LINE L2 2359 2757 -557 3848 187 45 23 chr11 41726830 41728275 -109055278 + L1PB4 LINE L1 4316 5782 -374 230 0 0 0 chr11 41728310 41728339 -109055214 - L1PB4 LINE L1 -370 5786 5758 2003 156 39 0 chr11 41728347 41728707 -109054846 + L1PB4 LINE L1 5783 6156 0 616 309 125 36 chr11 41728707 41729193 -109054360 + L2 LINE L2 2776 3313 0 204 299 60 0 chr11 41730032 41730099 -109053454 + L2 LINE L2 3236 3306 -7 289 362 127 18 chr11 41730350 41730579 -109052974 + MIR SINE MIR 9 262 0 412 301 54 24 chr11 41730809 41730975 -109052578 + MIR SINE MIR 15 185 -77 458 291 58 6 chr11 41731023 41731195 -109052358 - MIR SINE MIR -69 193 13 217 266 0 2 chr11 41731620 41731673 -109051880 + MIR SINE MIR 61 112 -96 229 195 0 0 chr11 41731673 41731714 -109051839 - MSTA LTR MaLR 0 428 388 735 165 0 0 chr11 41731720 41731847 -109051706 - MSTA-int LTR MaLR -1097 554 428 * 1688 154 3 0 chr11 41731830 41732115 -109051438 - MSTA-int LTR MaLR -1365 286 1 1892 168 128 8 chr11 41732115 41732497 -109051056 - MSTA LTR MaLR 0 428 1 1400 225 65 105 chr11 41732556 41733488 -109050065 - LTR28 LTR ERV1 0 1020 1 214 244 25 17 chr11 41735394 41735513 -109048040 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 282 125 0 0 chr11 41736571 41736619 -109046934 + (CA)n Simple_repeat Simple_repeat 1 48 0 536 290 59 31 chr11 41736906 41737161 -109046392 + MIR SINE MIR 1 262 0 607 118 0 0 chr11 41737447 41737540 -109046013 + MLT2A2 LTR ERVL 1 93 -360 36764 74 11 17 chr11 41737540 41740654 -109042899 + HERVL-A1 LTR ERVL 810 3887 -1767 2482 70 0 13 chr11 41740654 41740969 -109042584 + AluY SINE Alu 1 311 0 36764 74 11 17 chr11 41740969 41742727 -109040826 + HERVL-A1 LTR ERVL 3887 5654 0 2267 115 75 11 chr11 41742729 41743104 -109040449 + MLT2A1 LTR ERVL 6 404 -40 384 90 29 0 chr11 41743154 41743170 -109040383 + MLT2A2 LTR ERVL 399 413 -40 351 0 0 0 chr11 41743170 41743209 -109040344 + (CA)n Simple_repeat Simple_repeat 2 40 0 384 90 29 0 chr11 41743209 41743262 -109040291 + MLT2A2 LTR ERVL 413 453 0 270 0 0 0 chr11 41744113 41744143 -109039410 + (TA)n Simple_repeat Simple_repeat 2 31 0 1021 139 12 0 chr11 41744151 41744317 -109039236 - AluSg/x SINE Alu 0 312 145 952 123 14 0 chr11 41744318 41744456 -109039097 + AluSq/x SINE Alu 1 140 -172 200 111 22 0 chr11 41745055 41745100 -109038453 + (AAATG)n Simple_repeat Simple_repeat 5 50 0 2284 72 16 3 chr11 41746477 41746784 -109036769 - AluY SINE Alu 0 311 1 21 36 0 0 chr11 41746797 41746825 -109036728 + AT_rich Low_complexity Low_complexity 1 28 0 530 231 52 8 chr11 41747531 41747665 -109035888 + MER5A DNA MER1_type 2 141 -48 610 222 8 0 chr11 41747665 41747782 -109035771 + MER63 DNA MER1_type 43 786 -50 393 337 50 33 chr11 41747849 41748030 -109035523 + MIR SINE MIR 13 196 -66 11730 160 64 19 chr11 41749682 41750928 -109032625 + L1M1 LINE L1 1225 2414 -5151 1943 102 74 0 chr11 41750928 41751212 -109032341 + AluY SINE Alu 1 305 -6 11730 160 64 19 chr11 41751212 41752246 -109031307 + L1M1 LINE L1 2414 3606 -3959 940 126 0 15 chr11 41752249 41752384 -109031169 + AluSq/x SINE Alu 1 133 -179 8078 85 35 3 chr11 41752394 41752552 -109031001 - L1P3 LINE L1 -351 5803 5652 342 0 0 0 chr11 41752552 41752590 -109030963 + (TA)n Simple_repeat Simple_repeat 1 38 0 8078 85 35 3 chr11 41752590 41754009 -109029544 - L1P3 LINE L1 -502 5652 4178 518 69 42 0 chr11 41754008 41754080 -109029473 + L1P3 LINE L1 4089 4163 -1983 * 2050 137 0 6 chr11 41754105 41754419 -109029134 + AluSx SINE Alu 1 312 0 357 279 66 50 chr11 41755841 41756099 -109027454 + L1MC4 LINE L1 7567 7828 -214 225 65 0 0 chr11 41756173 41756204 -109027349 + (CA)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr11 41756381 41756406 -109027147 + AT_rich Low_complexity Low_complexity 1 25 0 2382 66 0 0 chr11 41756504 41756806 -109026747 - AluY SINE Alu -9 302 1 279 365 81 58 chr11 41757036 41757395 -109026158 + L2 LINE L2 130 496 -2818 270 261 45 30 chr11 41757396 41757509 -109026044 - MER58B DNA MER1_type -1 340 103 4130 26 10 12 chr11 41757541 41758048 -109025505 - L1PA4 LINE L1 -2 6153 5648 357 24 0 0 chr11 41758064 41758106 -109025447 + (CA)n Simple_repeat Simple_repeat 2 43 0 2491 27 3 0 chr11 41758225 41758521 -109025032 - L1PA5 LINE L1 -212 5942 5646 267 31 0 0 chr11 41758535 41758567 -109024986 + (CA)n Simple_repeat Simple_repeat 2 33 0 1514 307 214 25 chr11 41758698 41759501 -109024052 + L2 LINE L2 583 1233 -2081 1976 139 0 16 chr11 41759501 41759530 -109024023 - AluSx SINE Alu -1 311 283 333 0 0 0 chr11 41759530 41759567 -109023986 + (TG)n Simple_repeat Simple_repeat 2 38 0 1976 139 0 16 chr11 41759567 41759853 -109023700 - AluSx SINE Alu -29 283 1 1514 307 214 25 chr11 41759853 41760359 -109023194 + L2 LINE L2 1233 2139 -1175 429 298 43 58 chr11 41760437 41760625 -109022928 + Charlie2 DNA MER1_type 35 219 -2643 21 71 0 0 chr11 41761588 41761630 -109021923 + AT_rich Low_complexity Low_complexity 1 42 0 2181 77 0 17 chr11 41763094 41763393 -109020160 + AluY SINE Alu 1 294 -17 185 357 0 29 chr11 41763756 41763826 -109019727 - MIR SINE MIR -119 89 22 46 19 0 0 chr11 41763933 41763986 -109019567 + AT_rich Low_complexity Low_complexity 1 53 0 21 82 0 0 chr11 41764682 41764731 -109018822 + AT_rich Low_complexity Low_complexity 1 49 0 47 82 0 0 chr11 41765315 41765425 -109018128 + AT_rich Low_complexity Low_complexity 1 110 0 24 53 0 0 chr11 41765536 41765574 -109017979 + AT_rich Low_complexity Low_complexity 1 38 0 204 358 21 11 chr11 41765597 41765692 -109017861 + MIR SINE MIR 17 112 -150 25 31 0 0 chr11 41765834 41765866 -109017687 + AT_rich Low_complexity Low_complexity 1 32 0 2026 121 7 0 chr11 41766865 41767154 -109016399 + AluSq SINE Alu 1 291 -22 2439 54 0 0 chr11 41768274 41768571 -109014982 + AluY SINE Alu 1 297 -14 23 0 0 0 chr11 41768580 41768603 -109014950 + AT_rich Low_complexity Low_complexity 1 23 0 915 120 23 17 chr11 41770168 41770343 -109013210 + CT-rich Low_complexity Low_complexity 3 178 0 280 284 12 0 chr11 41770434 41770515 -109013038 + L2 LINE L2 3228 3309 -4 401 362 83 5 chr11 41770639 41770857 -109012696 - MIR SINE MIR 0 262 28 440 369 101 23 chr11 41771234 41771670 -109011883 + L2 LINE L2 1711 2180 -1134 791 152 23 15 chr11 41771688 41771958 -109011595 + CT-rich Low_complexity Low_complexity 1 272 0 1525 181 30 0 chr11 41772020 41772285 -109011268 + AluJb SINE Alu 1 273 -39 411 21 0 0 chr11 41772289 41772337 -109011216 + (CA)n Simple_repeat Simple_repeat 1 48 0 236 338 202 10 chr11 41772367 41772565 -109010988 + L2 LINE L2 2268 2503 -811 2151 141 13 11 chr11 41772597 41772974 -109010579 - L1MA8 LINE L1 -5 6286 5909 989 188 39 67 chr11 41772978 41773211 -109010342 - MER8 DNA MER2_type 0 239 12 1613 141 8 0 chr11 41773211 41773473 -109010080 - L1MA8 LINE L1 -385 5906 5643 426 393 62 4 chr11 41773475 41773717 -109009836 + L2 LINE L2 2517 2772 -542 2504 30 0 7 chr11 41773721 41774020 -109009533 + AluY SINE Alu 1 297 -14 321 312 8 23 chr11 41774142 41774319 -109009234 + GA-rich Low_complexity Low_complexity 1 174 0 1599 111 9 87 chr11 41774375 41774709 -109008844 + AluY SINE Alu 4 311 0 245 241 58 46 chr11 41774749 41774836 -109008717 + MLT1G1 LTR MaLR 508 595 0 836 282 52 33 chr11 41774904 41775412 -109008141 - L1MEd LINE L1 -3429 3135 2613 2124 118 10 0 chr11 41775412 41775717 -109007836 + AluSg SINE Alu 1 308 -2 836 282 52 33 chr11 41775717 41775782 -109007771 - L1MEd LINE L1 -3951 2613 2551 22 35 0 0 chr11 41775870 41775899 -109007654 + AT_rich Low_complexity Low_complexity 1 29 0 541 304 98 21 chr11 41776160 41776836 -109006717 - L1MEd LINE L1 -4640 2105 1340 278 258 119 20 chr11 41776945 41777096 -109006457 - L1MEd LINE L1 -4956 1089 924 658 161 6 0 chr11 41778790 41778951 -109004602 + (TA)n Simple_repeat Simple_repeat 1 162 0 1834 139 0 29 chr11 41779458 41779768 -109003785 + AluSx SINE Alu 1 301 -11 1118 243 31 7 chr11 41779809 41780097 -109003456 - MLT1A1 LTR MaLR 0 365 71 565 231 37 48 chr11 41780286 41780662 -109002891 - pTR5 LTR ERV1 -1326 1112 741 362 333 8 8 chr11 41780759 41780876 -109002677 + MIR SINE MIR 27 143 -119 414 296 68 0 chr11 41780895 41781027 -109002526 + MLT1G1 LTR MaLR 10 150 -445 342 236 49 63 chr11 41781246 41781369 -109002184 + MLT1H1 LTR MaLR 374 481 -74 2164 85 3 7 chr11 41781369 41781676 -109001877 + AluY SINE Alu 1 306 -5 342 236 49 63 chr11 41781676 41781750 -109001803 + MLT1H1 LTR MaLR 481 554 -1 1896 150 0 17 chr11 41781843 41782137 -109001416 + AluSx SINE Alu 4 292 -20 21 71 0 0 chr11 41782279 41782321 -109001232 + AT_rich Low_complexity Low_complexity 1 42 0 649 259 132 61 chr11 41782570 41783010 -109000543 + MLT1H LTR MaLR 72 542 -7 27 0 0 0 chr11 41783022 41783049 -109000504 + AT_rich Low_complexity Low_complexity 1 27 0 34 0 0 0 chr11 41783221 41783255 -109000298 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr11 41783719 41783746 -108999807 + AT_rich Low_complexity Low_complexity 1 27 0 288 348 133 6 chr11 41785690 41785871 -108997682 - MIR SINE MIR -56 206 3 311 298 0 0 chr11 41785932 41786012 -108997541 + MER5B DNA MER1_type 84 152 -26 24 0 0 0 chr11 41787284 41787308 -108996245 + AT_rich Low_complexity Low_complexity 1 24 0 1443 173 7 7 chr11 41787317 41787606 -108995947 + L1MA4A LINE L1 6010 6298 -5 278 327 24 55 chr11 41788374 41788539 -108995014 + MIR3 SINE MIR 43 202 -6 249 240 10 20 chr11 41789572 41789632 -108993921 + (TA)n Simple_repeat Simple_repeat 1 61 -38 185 0 40 0 chr11 41789632 41789657 -108993896 + (TATAG)n Simple_repeat Simple_repeat 3 28 0 249 240 10 20 chr11 41789657 41789696 -108993857 + (TA)n Simple_repeat Simple_repeat 61 99 0 444 207 0 0 chr11 41790052 41790134 -108993419 - Tigger5 DNA MER2_type 0 2323 2242 357 244 0 0 chr11 41790211 41790289 -108993264 - Tigger5 DNA MER2_type -2244 79 2 2078 70 3 60 chr11 41790801 41791101 -108992452 + AluSg SINE Alu 1 283 -27 2318 66 3 0 chr11 41791167 41791456 -108992097 + AluY SINE Alu 1 290 -21 822 273 44 20 chr11 41791509 41791758 -108991795 - MIR SINE MIR -4 258 4 211 284 111 12 chr11 41791758 41791838 -108991715 - L2 LINE L2 -1001 2313 2226 2007 66 90 14 chr11 41791843 41792132 -108991421 + AluY SINE Alu 1 311 0 29 78 0 0 chr11 41792398 41792462 -108991091 + AT_rich Low_complexity Low_complexity 1 64 0 202 390 50 0 chr11 41792798 41792898 -108990655 - L2 LINE L2 -552 2762 2658 26 30 0 0 chr11 41794258 41794291 -108989262 + AT_rich Low_complexity Low_complexity 1 33 0 185 200 75 0 chr11 41794489 41794529 -108989024 - L2 LINE L2 0 3313 3271 866 236 12 45 chr11 41794634 41794876 -108988677 + L1M3a LINE L1 1 234 -5721 255 173 0 0 chr11 41794987 41795039 -108988514 + CT-rich Low_complexity Low_complexity 1 52 0 1702 265 73 14 chr11 41795043 41795662 -108987891 - L1MC4a LINE L1 0 7808 7154 435 310 109 0 chr11 41795779 41795953 -108987600 - MIR SINE MIR -59 203 11 591 308 30 5 chr11 41796112 41796310 -108987243 + MIR SINE MIR 50 252 -10 2185 117 10 3 chr11 41796579 41796887 -108986666 - AluSg SINE Alu 0 310 1 22 0 0 0 chr11 41797258 41797280 -108986273 + AT_rich Low_complexity Low_complexity 1 22 0 900 182 5 24 chr11 41798302 41798680 -108984873 + G-rich Low_complexity Low_complexity 1 370 0 221 305 104 19 chr11 41798886 41799009 -108984544 + MIR SINE MIR 15 139 -69 1794 218 45 19 chr11 41799621 41800196 -108983357 - MER82 DNA MER2_type 0 653 1 611 145 43 17 chr11 41801122 41801239 -108982314 + MLT2B1 LTR ERVL 401 520 0 245 313 50 12 chr11 41801271 41801351 -108982202 + L2 LINE L2 3096 3178 -94 242 193 160 160 chr11 41801550 41801700 -108981853 + MIR SINE MIR 112 261 -1 414 287 32 70 chr11 41801871 41801902 -108981651 + MIR SINE MIR 4 35 -227 2245 98 0 0 chr11 41801902 41802197 -108981356 + AluY SINE Alu 1 295 -16 414 287 32 70 chr11 41802197 41802322 -108981231 + MIR SINE MIR 35 154 -108 410 165 0 0 chr11 41802330 41802409 -108981144 + L1MA10 LINE L1 6254 6332 -2 236 278 69 14 chr11 41802661 41802733 -108980820 + L2 LINE L2 3195 3270 -2 213 269 0 45 chr11 41802849 41802916 -108980637 + L2 LINE L2 3248 3311 -2 * 236 308 150 8 chr11 41802911 41803044 -108980509 - MIR SINE MIR 0 262 111 339 336 53 34 chr11 41803241 41803449 -108980104 + MIR SINE MIR 38 249 -13 488 329 36 60 chr11 41804885 41805255 -108978298 - L2 LINE L2 -172 3141 2772 252 0 0 0 chr11 41805256 41805284 -108978269 + (T)n Simple_repeat Simple_repeat 1 28 0 307 214 18 42 chr11 41805344 41805512 -108978041 + CT-rich Low_complexity Low_complexity 2 165 0 308 135 19 0 chr11 41805794 41805846 -108977707 - MLT1A1 LTR MaLR -312 53 1 23 33 0 0 chr11 41806085 41806115 -108977438 + AT_rich Low_complexity Low_complexity 1 30 0 36 40 0 0 chr11 41807212 41807262 -108976291 + AT_rich Low_complexity Low_complexity 1 50 0 2010 74 0 0 chr11 41807270 41807555 -108975998 + AluY SINE Alu 39 323 0 16691 148 19 94 chr11 41808076 41811836 -108971717 + L1P LINE L1 12 3487 -2659 6808 70 6 1 chr11 41811836 41813231 -108970322 + L1PA8 LINE L1 4754 6165 -7 23 0 0 0 chr11 41813794 41813817 -108969736 + AT_rich Low_complexity Low_complexity 1 23 0 321 299 51 51 chr11 41813884 41814081 -108969472 + L2 LINE L2 2282 2478 -836 669 203 16 0 chr11 41815354 41815482 -108968071 - Tigger7 DNA MER2_type 0 2487 2358 * 3642 179 17 3 chr11 41815477 41816125 -108967428 - Tigger7 DNA MER2_type -1664 823 167 1860 239 42 2 chr11 41816213 41816733 -108966820 + L1M4 LINE L1 4382 4922 -1224 48 72 0 0 chr11 41816790 41816887 -108966666 + AT_rich Low_complexity Low_complexity 1 97 0 1108 196 31 54 chr11 41817061 41817378 -108966175 - L1MB8 LINE L1 -1 6177 5868 2263 65 41 3 chr11 41817450 41817741 -108965812 - AluY SINE Alu -6 305 4 237 275 174 28 chr11 41818816 41818925 -108964628 - MIR SINE MIR -33 229 105 3686 49 11 0 chr11 41819359 41819825 -108963728 + L1PA4 LINE L1 5683 6153 -2 21 57 0 0 chr11 41820155 41820190 -108963363 + AT_rich Low_complexity Low_complexity 1 35 0 255 170 0 0 chr11 41821962 41822009 -108961544 + (TG)n Simple_repeat Simple_repeat 2 48 0 1305 225 165 20 chr11 41822561 41822875 -108960678 - MSTD LTR MaLR 0 396 26 2489 160 40 5 chr11 41822875 41823320 -108960233 - LOR1b LTR ERV1 0 461 1 1305 225 165 20 chr11 41823320 41823351 -108960202 - MSTD LTR MaLR -370 26 1 1907 87 114 0 chr11 41824499 41824763 -108958790 - AluSq SINE Alu -19 294 1 249 210 0 0 chr11 41824993 41825055 -108958498 + GA-rich Low_complexity Low_complexity 1 62 0 263 229 16 0 chr11 41825256 41825317 -108958236 - MER112 DNA MER1_type -195 65 4 316 307 74 45 chr11 41825694 41825938 -108957615 - MIR SINE MIR 0 262 12 345 346 102 38 chr11 41827223 41827489 -108956064 - L1MB8 LINE L1 -2002 5806 5524 1959 226 106 0 chr11 41827729 41828277 -108955276 - L1MD3 LINE L1 -8 7987 7382 696 328 69 55 chr11 41828757 41829409 -108954144 - L1MB8 LINE L1 -1570 4576 3916 2234 107 0 3 chr11 41829466 41829766 -108953787 - AluSg1 SINE Alu -10 299 1 322 348 87 0 chr11 41829779 41829963 -108953590 - L1MB8 LINE L1 -2338 3808 3609 622 218 135 10 chr11 41830338 41830531 -108953022 + MLT1D LTR MaLR 23 239 -266 750 209 128 19 chr11 41830667 41830920 -108952633 - THE1B LTR MaLR -154 210 1 8669 158 7 38 chr11 41830920 41832468 -108951085 - THE1B-int LTR MaLR 0 1580 82 386 152 0 0 chr11 41832469 41832535 -108951018 - MSTA LTR MaLR -21 407 342 5261 132 27 11 chr11 41832543 41833346 -108950207 - THE1-int LTR MaLR -522 1058 243 2720 62 23 44 chr11 41833347 41833431 -108950122 + THE1B-int LTR MaLR 1202 1286 -294 2351 95 0 3 chr11 41833431 41833735 -108949818 + AluY SINE Alu 1 303 -8 2720 62 23 44 chr11 41833735 41834037 -108949516 + THE1B-int LTR MaLR 1286 1580 0 2041 126 75 31 chr11 41834037 41834386 -108949167 + THE1B LTR MaLR 1 364 0 1286 355 64 10 chr11 41834422 41835028 -108948525 - L2 LINE L2 -433 2881 2243 328 260 55 0 chr11 41835125 41835252 -108948301 + MER103 DNA DNA 14 147 -19 1756 129 16 0 chr11 41835900 41836156 -108947397 + AluSp SINE Alu 39 298 -15 2340 91 7 0 chr11 41836553 41836862 -108946691 - AluY SINE Alu 0 311 1 231 377 8 16 chr11 41837223 41837345 -108946208 + MIR SINE MIR 19 139 -123 619 200 0 0 chr11 41837385 41837490 -108946063 + U6 snRNA snRNA 2 106 -1 1310 224 29 40 chr11 41837502 41838043 -108945510 + L1MA9 LINE L1 2702 3399 -4167 * 2238 211 45 52 chr11 41838033 41838440 -108945113 + L1MA9 LINE L1 6800 7202 -529 189 74 0 0 chr11 41838440 41838467 -108945086 + (CA)n Simple_repeat Simple_repeat 2 28 0 2238 211 45 52 chr11 41838467 41838731 -108944822 + L1MA9 LINE L1 7202 7466 -265 2115 142 19 27 chr11 41838739 41839105 -108944448 - THE1B LTR MaLR -1 363 1 3198 118 2 0 chr11 41839105 41839544 -108944009 - THE1B-int LTR MaLR 0 1580 1141 349 268 0 72 chr11 41839729 41839923 -108943630 + A-rich Low_complexity Low_complexity 1 180 0 345 250 0 22 chr11 41840166 41840258 -108943295 + MIR SINE MIR 173 262 0 3363 151 11 8 chr11 41841010 41841618 -108941935 - L1MA6 LINE L1 0 6300 5691 2057 172 44 26 chr11 41841622 41841756 -108941797 + L1M2 LINE L1 5062 5192 -1108 180 0 0 0 chr11 41841756 41841776 -108941777 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2057 172 44 26 chr11 41841776 41842292 -108941261 + L1M2 LINE L1 5192 5721 -579 293 291 107 0 chr11 41842686 41842789 -108940764 - MIR SINE MIR -73 189 76 2302 91 3 0 chr11 41842868 41843166 -108940387 - AluSp SINE Alu -14 299 1 2323 84 7 0 chr11 41843783 41844091 -108939462 + AluY SINE Alu 2 311 0 768 250 20 10 chr11 41844708 41844912 -108938641 + LTR52 LTR ERVL 175 380 -41 288 177 32 16 chr11 41845049 41845111 -108938442 - HERVL74 LTR ERVL -4407 1278 1216 * 557 268 200 17 chr11 41845096 41845331 -108938222 + HERVL74 LTR ERVL 1720 1997 -3688 7384 33 5 0 chr11 41845811 41846977 -108936576 - L1PA3 LINE L1 -7 6148 4975 180 0 0 0 chr11 41847977 41847997 -108935556 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1930 127 7 0 chr11 41848003 41848278 -108935275 - AluSx SINE Alu -35 277 1 2118 127 0 0 chr11 41849242 41849534 -108934019 + AluSx SINE Alu 3 294 -18 26 0 9 0 chr11 41849534 41849601 -108933952 + AT_rich Low_complexity Low_complexity 1 26 0 2313 196 28 38 chr11 41852047 41852551 -108931002 - MLT1D LTR MaLR 0 505 7 329 282 13 0 chr11 41852653 41852731 -108930822 - MER2 DNA MER2_type 0 345 267 861 224 34 0 chr11 41852759 41852938 -108930615 - MER2 DNA MER2_type -160 185 1 458 312 7 14 chr11 41853162 41853303 -108930250 - MIR SINE MIR -105 157 18 779 327 8 4 chr11 41853972 41854226 -108929327 - MIR SINE MIR 0 262 8 3442 236 93 7 chr11 41854642 41855600 -108927953 + MER45B DNA AcHobo 1 1040 0 195 114 0 0 chr11 41856027 41856062 -108927491 + (TTA)n Simple_repeat Simple_repeat 2 36 0 275 258 161 21 chr11 41856062 41856155 -108927398 - MIR SINE MIR -76 186 81 1046 320 111 70 chr11 41856204 41856881 -108926672 + L2 LINE L2 735 1482 -1832 1796 138 3 24 chr11 41856881 41857179 -108926374 - AluSx SINE Alu -20 292 1 1046 320 111 70 chr11 41857179 41857668 -108925885 + L2 LINE L2 1482 1949 -1365 268 411 8 0 chr11 41857658 41857782 -108925771 + L2 LINE L2 2921 3045 -268 * 737 197 0 0 chr11 41857867 41858019 -108925534 - L1MC3 LINE L1 -8 7777 7626 4336 92 9 2 chr11 41858027 41858710 -108924843 + L1PA10 LINE L1 5182 5868 -300 593 141 20 0 chr11 41858811 41858910 -108924643 + L1PA10 LINE L1 6057 6157 -11 1016 211 137 58 chr11 41858919 41859284 -108924269 - L1MC3 LINE L1 -1628 6157 5800 * 2340 238 88 31 chr11 41859265 41860033 -108923520 - L1MA4A LINE L1 -6 6297 5486 3674 190 45 59 chr11 41860082 41860218 -108923335 - L1MB2 LINE L1 -8 6163 6027 1764 156 13 29 chr11 41860218 41860525 -108923028 + AluSx SINE Alu 2 303 -9 3674 190 45 59 chr11 41860525 41861446 -108922107 - L1MB2 LINE L1 -144 6027 5127 21 71 0 0 chr11 41861449 41861491 -108922062 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr11 41861591 41861622 -108921931 + AT_rich Low_complexity Low_complexity 1 31 0 225 154 0 0 chr11 41862635 41862674 -108920879 + (CATA)n Simple_repeat Simple_repeat 2 40 0 268 381 79 28 chr11 41862770 41862985 -108920568 - MIR SINE MIR -31 231 6 199 186 23 0 chr11 41863077 41863120 -108920433 + L2 LINE L2 3269 3312 -1 1123 223 52 86 chr11 41863776 41864255 -108919298 + MLT1C LTR MaLR 1 463 -4 534 202 0 9 chr11 41865706 41865820 -108917733 - L1MC2 LINE L1 -1 6343 6231 809 201 0 0 chr11 41865859 41866013 -108917540 + FRAM SINE Alu 12 165 -11 722 312 26 21 chr11 41866500 41866830 -108916723 - MLT1G1 LTR MaLR -297 264 1 2233 252 75 68 chr11 41867812 41869088 -108914465 - L1M4c LINE L1 -2081 4301 3013 3342 84 20 0 chr11 41869088 41869530 -108914023 - MLT2A2 LTR ERVL 0 453 3 2233 252 75 68 chr11 41869530 41869608 -108913945 - L1M4c LINE L1 -3369 3013 2937 * 5993 168 6 15 chr11 41869605 41870728 -108912825 + L1PB1 LINE L1 4010 5142 -1009 2097 110 3 28 chr11 41870728 41871047 -108912506 + AluY SINE Alu 1 311 0 5993 168 6 15 chr11 41871047 41871749 -108911804 + L1PB1 LINE L1 5142 5815 -336 2464 77 0 0 chr11 41871749 41872060 -108911493 + AluY SINE Alu 1 311 0 5993 168 6 15 chr11 41872060 41872393 -108911160 + L1PB1 LINE L1 5815 6149 -2 1427 290 63 15 chr11 41872406 41873275 -108910278 - L1M4c LINE L1 -3435 2947 2041 1070 226 22 0 chr11 41873378 41873604 -108909949 + MLT2B3 LTR ERVL 1 231 -323 250 250 17 0 chr11 41873607 41873667 -108909886 + CT-rich Low_complexity Low_complexity 1 61 0 1116 284 4 4 chr11 41873673 41873923 -108909630 + MLT2B3 LTR ERVL 226 475 -79 9700 233 21 23 chr11 41873923 41874354 -108909199 + L1 LINE L1 2158 2588 -3558 1623 183 9 40 chr11 41874354 41874676 -108908877 - AluJb SINE Alu 0 312 1 9700 233 21 23 chr11 41874676 41876952 -108906601 + L1 LINE L1 2588 4859 -1287 2020 121 7 0 chr11 41877266 41877555 -108905998 + AluSq SINE Alu 1 291 -22 284 342 80 20 chr11 41877896 41878349 -108905204 + L1MEc LINE L1 1275 1754 -4642 21 0 0 0 chr11 41878446 41878467 -108905086 + AT_rich Low_complexity Low_complexity 1 21 0 3207 274 31 7 chr11 41878614 41879834 -108903719 + L1MEc LINE L1 2665 3913 -2302 1917 231 101 18 chr11 41879840 41880385 -108903168 + L1MC3 LINE L1 7097 7686 -99 968 218 34 27 chr11 41880386 41880680 -108902873 - L1M3 LINE L1 -912 5234 4939 * 2274 170 9 24 chr11 41880674 41881144 -108902409 + L1M3 LINE L1 5227 5689 -479 581 311 63 36 chr11 41881183 41881595 -108901958 + L1ME3A LINE L1 3080 3502 -2644 815 261 53 76 chr11 41881623 41881676 -108901877 + L1ME3A LINE L1 5424 5477 -685 2216 97 0 10 chr11 41881676 41881985 -108901568 + AluY SINE Alu 1 306 -5 815 261 53 76 chr11 41881985 41882457 -108901096 + L1ME3A LINE L1 5477 5937 -225 317 337 83 18 chr11 41882556 41882725 -108900828 + L1ME3A LINE L1 5989 6168 -2 2125 99 0 0 chr11 41882889 41883215 -108900338 - AluSx SINE Alu 0 326 1 389 274 94 60 chr11 41883660 41883894 -108899659 - MIR SINE MIR 0 262 21 235 340 19 47 chr11 41884702 41884808 -108898745 + L2 LINE L2 3137 3239 -33 252 0 0 0 chr11 41884816 41884844 -108898709 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2059 113 0 0 chr11 41885225 41885530 -108898023 - AluY SINE Alu 0 305 1 297 0 0 0 chr11 41886032 41886065 -108897488 + (TG)n Simple_repeat Simple_repeat 1 33 0 41 0 0 0 chr11 41886068 41886109 -108897444 + AT_rich Low_complexity Low_complexity 1 41 0 297 0 0 0 chr11 41886718 41886751 -108896802 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr11 41887290 41887313 -108896240 + AT_rich Low_complexity Low_complexity 1 23 0 785 148 13 0 chr11 41887579 41887734 -108895819 + CT-rich Low_complexity Low_complexity 4 160 0 313 22 43 0 chr11 41887736 41887782 -108895771 + (GA)n Simple_repeat Simple_repeat 1 48 0 1070 47 0 0 chr11 41887782 41887910 -108895643 - AluY SINE Alu -183 128 1 21 57 0 0 chr11 41888384 41888419 -108895134 + AT_rich Low_complexity Low_complexity 1 35 0 215 262 84 28 chr11 41888442 41888549 -108895004 - MIR SINE MIR -99 163 51 318 271 96 43 chr11 41888762 41888950 -108894603 + L2 LINE L2 3115 3312 -1 1188 210 101 14 chr11 41888966 41889252 -108894301 + MLT1A2 LTR MaLR 14 324 -50 796 91 51 23 chr11 41889293 41889468 -108894085 + GA-rich Low_complexity Low_complexity 1 180 0 227 86 29 0 chr11 41889470 41889505 -108894048 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 305 305 99 73 chr11 41889556 41889900 -108893653 + L1ME4a LINE L1 5467 5819 -302 22 56 0 0 chr11 41890087 41890123 -108893430 + AT_rich Low_complexity Low_complexity 1 36 0 456 290 97 0 chr11 41891003 41891220 -108892333 + MER44D DNA MER2_type 1 508 -101 1326 157 121 49 chr11 41891454 41891760 -108891793 - L1MA5A LINE L1 -5 6292 5965 610 184 0 0 chr11 41891762 41891860 -108891693 + MER44D DNA MER2_type 508 605 0 301 167 60 12 chr11 41891936 41892020 -108891533 + L1ME4a LINE L1 5991 6078 -43 198 0 0 0 chr11 41893459 41893481 -108890072 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 23 0 0 0 chr11 41894706 41894729 -108888824 + AT_rich Low_complexity Low_complexity 1 23 0 216 111 0 0 chr11 41894809 41894845 -108888708 + (CA)n Simple_repeat Simple_repeat 1 36 0 220 240 21 31 chr11 41895338 41895434 -108888119 + T-rich Low_complexity Low_complexity 1 95 0 1812 166 135 5 chr11 41895846 41896225 -108887328 - MSTA LTR MaLR 0 428 1 1455 206 52 0 chr11 41896352 41896638 -108886915 + MLT1C LTR MaLR 7 307 -160 744 255 16 5 chr11 41896969 41897153 -108886400 - MLT1D LTR MaLR -2 503 318 35 24 0 0 chr11 41897167 41897209 -108886344 + AT_rich Low_complexity Low_complexity 1 42 0 2414 194 11 19 chr11 41897268 41897805 -108885748 - L1MA4 LINE L1 -14 6286 5754 652 245 29 90 chr11 41897808 41898002 -108885551 - MLT1D LTR MaLR -170 297 117 1809 163 48 0 chr11 41898002 41898291 -108885262 + AluSx SINE Alu 1 303 -9 652 245 29 90 chr11 41898291 41898398 -108885155 - MLT1D LTR MaLR -350 117 5 308 152 29 48 chr11 41898407 41898512 -108885041 + (CATATA)n Simple_repeat Simple_repeat 3 105 0 339 267 76 12 chr11 41898518 41898690 -108884863 + L1ME4a LINE L1 5936 6118 -3 2199 60 20 40 chr11 41898692 41899012 -108884541 + AluY SINE Alu 1 292 -19 22 0 0 0 chr11 41899451 41899473 -108884080 + AT_rich Low_complexity Low_complexity 1 22 0 2172 213 14 27 chr11 41900970 41901487 -108882066 - MER67D LTR ERV1 0 514 5 2311 88 3 7 chr11 41901713 41902019 -108881534 - AluSc SINE Alu -4 305 1 1180 123 20 113 chr11 41902217 41902493 -108881060 - pTR5 LTR ERV1 -2039 399 17 5069 118 129 128 chr11 41902593 41903998 -108879555 + pTR5 LTR ERV1 1032 2438 0 3003 121 14 6 chr11 41904007 41904505 -108879048 + L1P LINE L1 2500 3001 -3145 2116 136 3 0 chr11 41904562 41904863 -108878690 - AluSx SINE Alu -10 302 1 22 80 0 0 chr11 41905674 41905724 -108877829 + AT_rich Low_complexity Low_complexity 1 50 0 2545 60 0 0 chr11 41905804 41906106 -108877447 + AluY SINE Alu 1 302 -9 342 231 0 0 chr11 41906112 41906203 -108877350 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 1571 199 13 10 chr11 41906348 41906649 -108876904 - AluJo SINE Alu -10 302 1 303 369 38 6 chr11 41906822 41906979 -108876574 + MIR SINE MIR 1 162 -100 287 316 129 7 chr11 41906975 41907130 -108876423 + MIR SINE MIR 70 243 -19 * 1596 178 32 11 chr11 41907131 41907412 -108876141 - AluJb SINE Alu -20 292 6 1502 151 70 91 chr11 41907823 41908206 -108875347 - THE1C LTR MaLR 0 375 1 2106 123 3 0 chr11 41909795 41910088 -108873465 + AluSg SINE Alu 1 294 -16 24 53 0 0 chr11 41910288 41910326 -108873227 + AT_rich Low_complexity Low_complexity 1 38 0 217 232 126 105 chr11 41910541 41910636 -108872917 + MIR3 SINE MIR 10 106 -102 1274 135 54 162 chr11 41910983 41911201 -108872352 - AluJb SINE Alu -4 298 127 423 119 0 0 chr11 41911201 41911268 -108872285 + (TG)n Simple_repeat Simple_repeat 2 68 0 1274 135 54 162 chr11 41911268 41911382 -108872171 - AluJb SINE Alu -175 127 2 1499 206 27 20 chr11 41911692 41911984 -108871569 + AluJo SINE Alu 1 294 -18 373 231 62 98 chr11 41912018 41912243 -108871310 + MLT1J LTR MaLR 244 460 -51 212 332 71 36 chr11 41912556 41912752 -108870801 + MIR SINE MIR 47 249 -13 185 150 0 50 chr11 41912809 41912849 -108870704 + MIR SINE MIR 112 149 -113 2802 176 59 20 chr11 41912858 41913505 -108870048 - L1MB1 LINE L1 -9 6180 5509 1311 221 120 2 chr11 41913479 41913896 -108869657 - L1MB1 LINE L1 -1175 4971 4506 * 1113 146 31 26 chr11 41913896 41914122 -108869431 + MER50 LTR ERV1 1 227 -507 1385 189 8 4 chr11 41914126 41914391 -108869162 + MER50 LTR ERV1 432 697 -37 3011 229 98 36 chr11 41914412 41915492 -108868061 - L1MB1 LINE L1 -1637 4509 3363 4090 202 21 20 chr11 41915594 41916599 -108866954 + L1 LINE L1 3381 4386 -1760 3385 128 82 0 chr11 41916610 41917197 -108866356 + L1MA3 LINE L1 5664 6298 -7 2070 115 7 0 chr11 41917235 41917534 -108866019 + AluSg SINE Alu 1 301 0 2393 64 3 3 chr11 41917820 41918115 -108865438 - AluY SINE Alu -16 295 1 544 210 17 0 chr11 41918116 41918235 -108865318 + Tigger7 DNA MER2_type 2360 2480 -7 22 0 0 0 chr11 41918268 41918290 -108865263 + AT_rich Low_complexity Low_complexity 1 22 0 1724 133 0 33 chr11 41918297 41918567 -108864986 + AluSx SINE Alu 1 261 -51 1561 233 32 2 chr11 41918658 41919070 -108864483 - L1PB4 LINE L1 -3 6153 5730 418 292 54 39 chr11 41919557 41919817 -108863736 + MLT1H1 LTR MaLR 1 264 -291 2381 91 3 0 chr11 41919928 41920235 -108863318 - AluY SINE Alu -3 308 1 349 241 46 0 chr11 41920287 41920395 -108863158 + MLT1H1 LTR MaLR 436 548 -7 21 0 0 0 chr11 41920482 41920503 -108863050 + AT_rich Low_complexity Low_complexity 1 21 0 2512 60 0 0 chr11 41920790 41921090 -108862463 + AluY SINE Alu 1 300 -11 1032 189 17 0 chr11 41921141 41921321 -108862232 + AluJo SINE Alu 1 183 -129 23 33 0 0 chr11 41924429 41924459 -108859094 + AT_rich Low_complexity Low_complexity 1 30 0 6580 73 14 7 chr11 41925264 41926749 -108856804 - L1PA7 LINE L1 -2 6152 4661 200 33 0 33 chr11 41926768 41926798 -108856755 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 1858 56 0 0 chr11 41926801 41927034 -108856519 - L1PA5 LINE L1 -3 6151 5919 1438 34 0 0 chr11 41927035 41927213 -108856340 + L1PA5 LINE L1 5717 5894 -260 * 10073 108 1 18 chr11 41927210 41928205 -108855348 - L1PA7 LINE L1 -1470 4676 3717 2340 95 0 22 chr11 41928205 41928521 -108855032 - AluY SINE Alu 0 311 3 10073 108 1 18 chr11 41928521 41929144 -108854409 - L1PA7 LINE L1 -2429 3717 3085 2414 90 0 6 chr11 41929390 41929701 -108853852 - AluY SINE Alu -2 309 1 209 176 0 0 chr11 41929895 41929929 -108853624 + (ATG)n Simple_repeat Simple_repeat 3 36 0 1070 157 30 0 chr11 41930037 41930234 -108853319 + MLT2B1 LTR ERVL 1 203 -317 249 196 0 0 chr11 41930291 41930337 -108853216 + MLT2B1 LTR ERVL 475 520 0 25 65 0 0 chr11 41930468 41930514 -108853039 + AT_rich Low_complexity Low_complexity 1 46 0 508 314 11 17 chr11 41930592 41930767 -108852786 + MLT1J1 LTR MaLR 37 210 -236 25 31 0 0 chr11 41931099 41931131 -108852422 + AT_rich Low_complexity Low_complexity 1 32 0 1337 205 55 0 chr11 41931951 41932205 -108851348 + AluJo SINE Alu 13 280 -32 189 200 0 50 chr11 41932207 41932287 -108851266 + GA-rich Low_complexity Low_complexity 4 79 0 185 351 5 76 chr11 41933367 41933578 -108849975 + L2 LINE L2 2813 3008 -264 208 240 0 0 chr11 41933997 41934047 -108849506 + T-rich Low_complexity Low_complexity 3 52 0 2520 62 3 0 chr11 41934137 41934445 -108849108 + AluY SINE Alu 1 309 -2 352 184 15 140 chr11 41934601 41934737 -108848816 + LTR12 LTR ERV1 239 357 -357 575 288 15 22 chr11 41935153 41935355 -108848198 + LTR40a LTR ERVL 84 227 -235 292 132 57 0 chr11 41935361 41935414 -108848139 + LTR40b LTR ERVL 372 427 -35 1087 116 23 0 chr11 41935883 41936056 -108847497 + LOR1a-int LTR ERV1 5888 6064 -2056 543 136 0 0 chr11 41936055 41936136 -108847417 + LOR1a-int LTR ERV1 8030 8110 -10 * 2465 88 0 0 chr11 41936184 41936492 -108847061 - AluY SINE Alu -3 308 1 1702 205 11 55 chr11 41936510 41936758 -108846795 + LOR1a LTR ERV1 60 280 -217 1881 154 0 10 chr11 41936758 41937050 -108846503 - AluSx SINE Alu -2 310 22 1702 205 11 55 chr11 41937050 41937259 -108846294 + LOR1a LTR ERV1 280 497 0 244 313 0 0 chr11 41937728 41937792 -108845761 + L2 LINE L2 3209 3272 0 239 218 0 36 chr11 41938806 41938862 -108844691 - MIR SINE MIR -62 146 98 10597 151 18 2 chr11 41939996 41941744 -108841809 - HERVL18 LTR ERVL -2268 3779 2004 453 370 76 23 chr11 41941790 41942024 -108841529 - L1M3c LINE L1 -5716 425 160 2390 82 7 0 chr11 41942024 41942327 -108841226 - AluY SINE Alu -6 305 1 453 370 76 23 chr11 41942327 41942489 -108841064 - L1M3c LINE L1 -5981 160 8 215 30 0 30 chr11 41942767 41942800 -108840753 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 264 383 8 0 chr11 41942992 41943112 -108840441 + L2 LINE L2 3186 3306 -7 728 305 12 9 chr11 41944362 41944609 -108838944 + MIR SINE MIR 17 262 0 21 82 0 0 chr11 41944627 41944676 -108838877 + AT_rich Low_complexity Low_complexity 1 49 0 1050 250 110 5 chr11 41944925 41945323 -108838230 + MLT1E1 LTR MaLR 3 529 -125 2219 76 21 0 chr11 41945323 41945634 -108837919 + AluSc SINE Alu 1 309 0 1050 250 110 5 chr11 41945634 41945747 -108837806 + MLT1E1 LTR MaLR 529 629 -25 2548 64 0 3 chr11 41945747 41946059 -108837494 + AluY SINE Alu 1 311 0 306 0 0 0 chr11 41946248 41946282 -108837271 + (TA)n Simple_repeat Simple_repeat 2 35 0 2140 113 3 3 chr11 41946356 41946665 -108836888 + AluSc SINE Alu 1 309 0 1888 103 0 70 chr11 41947499 41947800 -108835753 + AluSg SINE Alu 31 310 0 2281 86 6 16 chr11 41948203 41948517 -108835036 + AluY SINE Alu 1 311 0 2072 126 0 3 chr11 41948612 41948949 -108834604 - AluSq SINE Alu 0 336 1 836 235 15 66 chr11 41948950 41949222 -108834331 - L1MD2 LINE L1 -29 6330 6073 2348 256 43 6 chr11 41949238 41950165 -108833388 - L1MD2 LINE L1 -352 6007 5047 1437 257 52 28 chr11 41950163 41950696 -108832857 + L1M4 LINE L1 3985 4530 -1616 * 1832 100 0 8 chr11 41950696 41950937 -108832616 - AluSc SINE Alu -68 241 3 1118 264 50 9 chr11 41950941 41951384 -108832169 + L1M4 LINE L1 4582 5042 -1104 819 263 60 27 chr11 41951872 41952173 -108831380 + MLT1E LTR MaLR 283 593 0 1619 100 168 0 chr11 41952486 41952618 -108830935 - AluSg1 SINE Alu -17 292 184 309 26 0 0 chr11 41952618 41952656 -108830897 + (TTA)n Simple_repeat Simple_repeat 1 38 0 1619 100 168 0 chr11 41952656 41952773 -108830780 - AluSg1 SINE Alu -125 184 1 1450 191 123 11 chr11 41954086 41954437 -108829116 - MLT1B LTR MaLR 0 390 1 267 54 0 0 chr11 41954951 41954988 -108828565 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 315 277 54 9 chr11 41955004 41955116 -108828437 - L1MB8 LINE L1 -5 6173 6057 6310 252 67 13 chr11 41955124 41957673 -108825880 - L1MB8 LINE L1 -311 5873 3130 2065 113 3 11 chr11 41957673 41957995 -108825558 + AluY SINE Alu 1 320 0 6310 252 67 13 chr11 41957995 41958456 -108825097 - L1MB8 LINE L1 -3054 3130 2695 421 277 0 0 chr11 41958460 41958579 -108824974 - L1MB8 LINE L1 -3559 2587 2469 5196 169 46 6 chr11 41958590 41959612 -108823941 - L1MC1 LINE L1 0 6333 5271 4185 168 46 26 chr11 41959730 41959918 -108823635 - L1 LINE L1 -3323 4242 4059 2269 92 3 3 chr11 41959918 41960210 -108823343 + AluY SINE Alu 1 292 -19 4185 168 46 26 chr11 41960210 41960548 -108823005 - L1 LINE L1 -3506 4059 3729 2361 91 0 7 chr11 41960548 41960856 -108822697 - AluY SINE Alu -5 306 1 4185 168 46 26 chr11 41960856 41961720 -108821833 - L1 LINE L1 -3836 3729 2826 42 20 0 0 chr11 41961812 41961861 -108821692 + AT_rich Low_complexity Low_complexity 1 49 0 180 0 0 0 chr11 41961882 41961902 -108821651 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 182 319 97 69 chr11 41963185 41963329 -108820224 - L2 LINE L2 -1150 2164 2017 274 316 20 0 chr11 41963339 41963437 -108820116 - LTR67 LTR ERVL -10 547 448 194 361 92 66 chr11 41963652 41963929 -108819624 - L2 LINE L2 -1391 1923 1655 2650 10 3 3 chr11 41963929 41964225 -108819328 + AluYa5 SINE Alu 1 296 -15 194 361 92 66 chr11 41964225 41964279 -108819274 - L2 LINE L2 -1659 1655 1604 1949 147 3 0 chr11 41964279 41964572 -108818981 + AluSx SINE Alu 7 300 -12 194 361 92 66 chr11 41964572 41964594 -108818959 - L2 LINE L2 -1710 1604 1584 2428 68 0 13 chr11 41964594 41964901 -108818652 + AluY SINE Alu 1 303 -8 194 361 92 66 chr11 41964901 41964994 -108818559 - L2 LINE L2 -1730 1584 1495 1917 161 122 8 chr11 41964994 41965378 -108818175 - MSTA LTR MaLR 0 428 1 194 361 92 66 chr11 41965378 41965643 -108817910 - L2 LINE L2 -1819 1495 1190 216 343 72 84 chr11 41965647 41966015 -108817538 - L2 LINE L2 -2260 1054 683 1815 193 50 21 chr11 41966015 41966435 -108817118 + MSTB1 LTR MaLR 1 432 0 216 343 72 84 chr11 41966435 41966903 -108816650 - L2 LINE L2 -2631 683 228 533 351 4 13 chr11 41967084 41967323 -108816230 - LTR16B LTR ERVL -25 439 203 224 373 107 41 chr11 41967710 41968104 -108815449 + L3 LINE CR1 459 878 -699 191 296 8 96 chr11 41968106 41968231 -108815322 + L3 LINE CR1 1042 1155 -422 275 330 21 0 chr11 41968318 41968415 -108815138 + L2 LINE L2 2877 2975 -338 1054 261 68 9 chr11 41968483 41968809 -108814744 - MER87 LTR ERV1 0 541 197 2317 116 52 0 chr11 41969656 41970002 -108813551 + THE1B LTR MaLR 1 364 0 9822 131 19 40 chr11 41970002 41971318 -108812235 + THE1B-int LTR MaLR 1 1278 -302 2171 107 0 26 chr11 41971318 41971627 -108811926 + AluY SINE Alu 1 301 -10 9822 131 19 40 chr11 41971627 41971918 -108811635 + THE1B-int LTR MaLR 1278 1574 -6 2146 140 37 3 chr11 41971923 41972273 -108811280 + THE1B LTR MaLR 1 362 -2 3564 176 41 59 chr11 41972312 41972986 -108810567 - MER49 LTR ERV1 -163 760 100 1827 181 0 10 chr11 41972986 41973300 -108810253 - AluSx SINE Alu 0 312 2 3564 176 41 59 chr11 41973300 41973399 -108810154 - MER49 LTR ERV1 -823 100 1 1160 195 142 32 chr11 41973399 41973681 -108809872 - MER49-int LTR ERV1 -1 7093 6445 932 208 35 30 chr11 41973682 41973879 -108809674 - MER49-int LTR ERV1 -622 6136 5939 477 206 37 47 chr11 41973879 41974051 -108809502 - MER87-int LTR ERV1 -1307 4891 3635 904 144 5 96 chr11 41974177 41974364 -108809189 - MER87-int LTR ERV1 -4165 3955 3786 5476 196 52 67 chr11 41974482 41975659 -108807894 - MER87-int LTR ERV1 -2148 4183 2990 2550 68 0 0 chr11 41975659 41975970 -108807583 - AluY SINE Alu 0 311 1 5476 196 52 67 chr11 41975970 41977115 -108806438 - MER87-int LTR ERV1 -3341 2990 686 5350 168 59 42 chr11 41976201 41977466 -108806087 - LTR57-int LTR ERVL -3754 1589 303 * 642 242 21 31 chr11 41977630 41977824 -108805729 - MER87-int LTR ERV1 -1408 378 187 1203 270 72 31 chr11 41977982 41978426 -108805127 - MER87 LTR ERV1 0 541 80 197 368 0 0 chr11 41978612 41978688 -108804865 + L2 LINE L2 2886 2961 -353 237 321 0 24 chr11 41978812 41978896 -108804657 + L2 LINE L2 3189 3270 -2 280 261 0 0 chr11 41979214 41979283 -108804270 + HsTC2 DNA Tc2 31 99 -1799 544 286 68 23 chr11 41979460 41979813 -108803740 + HsTC2 DNA Tc2 1529 1897 -1 727 271 99 52 chr11 41979936 41980382 -108803171 + MLT1C LTR MaLR 1 467 0 1105 233 105 7 chr11 41980412 41980717 -108802836 - MLT1C LTR MaLR -132 335 1 1711 196 19 35 chr11 41982490 41982857 -108800696 + MLT1A1 LTR MaLR 1 361 -4 255 346 85 0 chr11 41982883 41983013 -108800540 + L3 LINE CR1 1282 1422 -155 2160 120 3 0 chr11 41983180 41983480 -108800073 + AluSq SINE Alu 3 303 -10 393 241 73 84 chr11 41983632 41983893 -108799660 + MLT1K LTR MaLR 315 572 -16 22 35 0 0 chr11 41984424 41984453 -108799100 + AT_rich Low_complexity Low_complexity 1 29 0 39 0 0 0 chr11 41984552 41984591 -108798962 + AT_rich Low_complexity Low_complexity 1 39 0 1832 124 40 30 chr11 41984592 41984804 -108798749 + AluY SINE Alu 1 218 -93 5042 73 64 116 chr11 41984804 41985675 -108797878 - LTR12 LTR ERV1 0 826 1 1832 124 40 30 chr11 41985675 41985761 -108797792 + AluY SINE Alu 218 302 -9 280 338 83 0 chr11 41985794 41985939 -108797614 + MIR SINE MIR 91 247 -15 23 0 0 0 chr11 41986047 41986070 -108797483 + AT_rich Low_complexity Low_complexity 1 23 0 233 318 8 83 chr11 41986144 41986276 -108797277 - MIR SINE MIR -71 137 16 1406 195 49 42 chr11 41986632 41986919 -108796634 - AluJb SINE Alu -23 289 1 781 262 8 4 chr11 41988664 41988927 -108794626 - L1M4 LINE L1 -940 6017 5754 268 243 9 37 chr11 41988928 41989035 -108794518 - L1M4 LINE L1 -4766 2193 2090 1104 274 60 33 chr11 41989048 41989416 -108794137 - L1M4 LINE L1 -6372 487 110 257 208 13 0 chr11 41989454 41989531 -108794022 + (TA)n Simple_repeat Simple_repeat 1 78 0 258 192 0 0 chr11 41989605 41989657 -108793896 + (TA)n Simple_repeat Simple_repeat 2 53 0 1360 234 103 37 chr11 41989802 41990365 -108793188 - LTR48B LTR ERV1 -44 600 1 23 33 0 0 chr11 41990434 41990464 -108793089 + AT_rich Low_complexity Low_complexity 1 30 0 1773 87 19 41 chr11 41990912 41991178 -108792375 + AluSq SINE Alu 1 260 -53 1539 275 56 8 chr11 41991282 41991872 -108791681 - L1 LINE L1 -2978 3168 2551 2049 168 56 3 chr11 41991873 41992212 -108791341 - LTR18A LTR ERVL 0 357 1 12740 166 15 1 chr11 41992213 41994244 -108789309 - HERVL18 LTR ERVL 0 6047 3987 2028 130 3 0 chr11 41994842 41995155 -108788398 - AluSx SINE Alu 0 314 1 667 166 60 26 chr11 41995162 41995313 -108788240 - LTR54B LTR ERV1 -342 156 1 24 0 0 0 chr11 41997191 41997215 -108786338 + AT_rich Low_complexity Low_complexity 1 24 0 204 188 94 8 chr11 41997671 41997788 -108785765 + (CACAA)n Simple_repeat Simple_repeat 1 127 0 206 118 0 0 chr11 41998578 41998612 -108784941 + (T)n Simple_repeat Simple_repeat 1 34 0 21 57 0 0 chr11 41999404 41999439 -108784114 + AT_rich Low_complexity Low_complexity 1 35 0 366 80 0 0 chr11 41999925 41999975 -108783578 + (CA)n Simple_repeat Simple_repeat 1 50 0 1745 141 131 39 chr11 42001761 42002150 -108781403 - MSTA LTR MaLR -3 425 1 26 0 0 0 chr11 42002232 42002258 -108781295 + AT_rich Low_complexity Low_complexity 1 26 0 1860 160 58 50 chr11 42002582 42002982 -108780571 + MER57A LTR ERV1 1 403 0 26 30 0 0 chr11 42003852 42003885 -108779668 + AT_rich Low_complexity Low_complexity 1 33 0 7082 46 7 0 chr11 42003917 42005225 -108778328 - L1PA5 LINE L1 -8 6146 4841 9404 42 1 0 chr11 42005226 42006379 -108777174 + L1PA5 LINE L1 3704 4857 -1289 1250 97 0 0 chr11 42006379 42006544 -108777009 - AluSg/x SINE Alu -11 301 137 1699 123 0 54 chr11 42007274 42007550 -108776003 - AluY SINE Alu -20 291 31 4758 110 249 71 chr11 42007553 42008881 -108774672 - pTR5 LTR ERV1 0 2438 743 1918 124 22 0 chr11 42009135 42009451 -108774102 - AluSc SINE Alu 0 322 1 308 269 39 9 chr11 42010087 42010197 -108773356 + MIR SINE MIR 48 161 -71 1925 152 0 19 chr11 42010482 42010798 -108772755 - AluSx SINE Alu -2 310 1 823 254 91 13 chr11 42010896 42011203 -108772350 + Zaphod DNA AcHobo 404 734 -3297 1864 223 148 20 chr11 42011223 42011927 -108771626 + Zaphod DNA AcHobo 2409 3202 -829 3532 182 48 25 chr11 42011984 42012777 -108770776 - L1MB3 LINE L1 -4 6179 5369 336 197 0 28 chr11 42013295 42013366 -108770187 - LTR28 LTR ERV1 -4 1016 948 663 226 33 60 chr11 42013503 42013790 -108769763 - LTR1 LTR ERV1 -558 227 1 2665 193 10 2 chr11 42014853 42015346 -108768207 - LOR1a LTR ERV1 0 497 1 2071 108 0 41 chr11 42015553 42015848 -108767705 + AluSg SINE Alu 6 288 -22 417 228 89 51 chr11 42015959 42016117 -108767436 - LTR40c LTR ERVL -107 358 195 228 266 143 98 chr11 42016574 42016777 -108766776 - MIR SINE MIR -16 246 35 186 167 0 0 chr11 42017891 42017927 -108765626 + A-rich Low_complexity Low_complexity 5 40 0 342 254 40 40 chr11 42018017 42018143 -108765410 - MIR SINE MIR 0 262 137 804 114 23 0 chr11 42018177 42018308 -108765245 - L1MA5A LINE L1 -4 6293 6160 2407 210 35 8 chr11 42018745 42019255 -108764298 - MER34 LTR ERV1 -18 524 1 204 40 0 0 chr11 42019677 42019702 -108763851 + (TAGA)n Simple_repeat Simple_repeat 1 25 0 1503 199 7 7 chr11 42019756 42020043 -108763510 - AluJo SINE Alu -23 289 3 347 241 138 40 chr11 42020434 42020603 -108762950 - MER33 DNA MER1_type -2265 320 116 2330 85 0 3 chr11 42020603 42020908 -108762645 - AluY SINE Alu -7 304 1 347 241 138 40 chr11 42020908 42020991 -108762562 - MER33 DNA MER1_type -2469 116 43 5782 94 21 13 chr11 42021161 42021815 -108761738 - L1PA13 LINE L1 -3 6160 5513 345 24 0 0 chr11 42021815 42021857 -108761696 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2353 60 0 11 chr11 42021857 42022142 -108761411 - AluY SINE Alu -29 282 1 5782 94 21 13 chr11 42022142 42022154 -108761399 - L1PA13 LINE L1 -650 5513 5503 2372 100 0 0 chr11 42022154 42022453 -108761100 - AluY SINE Alu -10 301 3 5782 94 21 13 chr11 42022453 42023574 -108759979 - L1PA13 LINE L1 -660 5503 4352 198 0 0 0 chr11 42023582 42023604 -108759949 + (TTA)n Simple_repeat Simple_repeat 3 24 0 34448 40 4 2 chr11 42023604 42028647 -108754906 - L1PA4 LINE L1 -18 6137 1085 1512 149 0 4 chr11 42028645 42028893 -108754660 - L1PA13 LINE L1 -1813 4333 4087 * 7714 79 3 2 chr11 42128894 42129931 -108653622 + L1P LINE L1 3281 4318 -1828 195 244 0 22 chr11 42130386 42130431 -108653122 - MIR SINE MIR -8 254 211 * 204 286 0 0 chr11 42130400 42130442 -108653111 - L2 LINE L2 -27 3286 3245 35 54 0 0 chr11 42130544 42130600 -108652953 + AT_rich Low_complexity Low_complexity 1 56 0 188 338 54 14 chr11 42130737 42130811 -108652742 - L2 LINE L2 -40 3232 3156 347 259 56 9 chr11 42131021 42131129 -108652424 - MIR SINE MIR 0 262 150 1146 67 0 0 chr11 42131261 42131396 -108652157 - AluY SINE Alu -176 135 1 308 227 45 4 chr11 42131661 42131776 -108651777 + MIR SINE MIR 99 256 -6 186 313 62 0 chr11 42131967 42132031 -108651522 - L2 LINE L2 -12 3301 3234 228 343 55 0 chr11 42132198 42132271 -108651282 + L2 LINE L2 3196 3272 0 2419 198 54 9 chr11 42132494 42132525 -108651028 - L1MA8 LINE L1 -209 6082 6054 1860 173 0 3 chr11 42132525 42132825 -108650728 - AluSx SINE Alu -13 299 1 2419 198 54 9 chr11 42132825 42133333 -108650220 - L1MA8 LINE L1 -237 6054 5519 1825 137 0 0 chr11 42133335 42133598 -108649955 - AluSg SINE Alu -9 301 39 412 377 108 34 chr11 42134426 42134805 -108648748 + L2 LINE L2 2839 3245 -27 2366 76 0 3 chr11 42135378 42135682 -108647871 + AluY SINE Alu 1 303 -8 24 0 0 0 chr11 42136040 42136064 -108647489 + AT_rich Low_complexity Low_complexity 1 24 0 2429 82 0 3 chr11 42137041 42137347 -108646206 + AluY SINE Alu 5 309 -2 613 312 5 11 chr11 42137416 42137602 -108645951 - MLT2E LTR ERVL 0 628 444 217 344 8 55 chr11 42137833 42137961 -108645592 - L2 LINE L2 -1 3271 3150 387 0 0 0 chr11 42139334 42139377 -108644176 + (CA)n Simple_repeat Simple_repeat 2 44 0 314 280 178 13 chr11 42139565 42139722 -108643831 - HAL1b LINE L1 -13 1335 1153 447 288 39 31 chr11 42139724 42140197 -108643356 - HAL1b LINE L1 -228 1120 548 2571 256 110 36 chr11 42140206 42141247 -108642306 + LTR28 LTR ERV1 1 1755 0 2721 195 28 4 chr11 42141296 42141804 -108641749 + MLT2B1 LTR ERVL 1 520 0 2369 108 0 0 chr11 42141977 42142283 -108641270 - AluSx SINE Alu -4 308 3 2183 106 0 7 chr11 42142300 42142603 -108640950 - AluY SINE Alu -10 301 1 5043 146 29 22 chr11 42144010 42144907 -108638646 + MER4D LTR ERV1 1 903 0 191 274 0 20 chr11 42144907 42144952 -108638601 - L2 LINE L2 -8 3264 3221 526 313 79 29 chr11 42145415 42145655 -108637898 - MIR SINE MIR -3 259 8 214 355 26 52 chr11 42146489 42146644 -108636909 - MIR SINE MIR -106 156 6 1419 193 40 20 chr11 42146649 42146949 -108636604 - AluJo SINE Alu -6 306 1 897 258 35 5 chr11 42147020 42147218 -108636335 + MLT2B3 LTR ERVL 313 516 -38 270 117 39 52 chr11 42147218 42147295 -108636258 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 323 145 0 43 chr11 42147297 42147366 -108636187 + MLT2B1 LTR ERVL 455 520 0 * 1293 261 73 34 chr11 42147366 42147790 -108635763 + MLT1F LTR MaLR 102 542 0 180 0 0 0 chr11 42148020 42148040 -108635513 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 25 0 0 0 chr11 42148422 42148447 -108635106 + AT_rich Low_complexity Low_complexity 1 25 0 1204 280 133 64 chr11 42148452 42148895 -108634658 + MLT1G1 LTR MaLR 1 436 -106 21 0 0 0 chr11 42149075 42149096 -108634457 + AT_rich Low_complexity Low_complexity 1 21 0 242 136 23 0 chr11 42149212 42149256 -108634297 + MLT1G1 LTR MaLR 546 590 0 192 361 28 0 chr11 42149359 42149431 -108634122 + MIR SINE MIR 39 112 -150 557 28 14 0 chr11 42149531 42149602 -108633951 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 260 195 12 37 chr11 42149604 42149686 -108633867 + Charlie8 DNA MER1_type 76 155 -2262 22 0 0 0 chr11 42149856 42149878 -108633675 + AT_rich Low_complexity Low_complexity 1 22 0 208 121 0 0 chr11 42149923 42149956 -108633597 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 566 250 117 32 chr11 42150181 42150369 -108633184 + MER3 DNA MER1_type 5 208 -1 293 354 97 7 chr11 42150609 42150753 -108632800 - MIR3 SINE MIR -16 192 36 315 355 60 30 chr11 42151650 42151816 -108631737 + L2 LINE L2 3096 3266 -6 29 90 0 0 chr11 42152790 42152868 -108630685 + AT_rich Low_complexity Low_complexity 1 78 0 22 0 0 0 chr11 42153090 42153112 -108630441 + AT_rich Low_complexity Low_complexity 1 22 0 291 281 20 84 chr11 42153325 42153373 -108630180 - LTR67 LTR ERVL -2 555 505 1399 197 16 89 chr11 42153373 42153465 -108630088 - MER61A LTR ERV1 0 343 246 2396 57 0 44 chr11 42153465 42153782 -108629771 + AluY SINE Alu 2 304 -7 1399 197 16 89 chr11 42153782 42154059 -108629494 - MER61A LTR ERV1 -97 246 1 291 281 20 84 chr11 42154059 42154213 -108629340 - LTR67 LTR ERVL -52 505 366 234 250 16 0 chr11 42154367 42154431 -108629122 + GA-rich Low_complexity Low_complexity 2 66 0 23 54 0 0 chr11 42155400 42155437 -108628116 + AT_rich Low_complexity Low_complexity 1 37 0 185 159 23 0 chr11 42156357 42156401 -108627152 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 215 250 54 18 chr11 42156518 42156574 -108626979 - L2 LINE L2 -5 3267 3210 346 246 43 51 chr11 42156669 42156807 -108626746 - LTR27 LTR ERV1 -2 634 498 2072 211 31 23 chr11 42156901 42157495 -108626058 - LTR27 LTR ERV1 -141 495 3 1670 157 34 11 chr11 42157495 42157979 -108625574 - LTR27-int LTR ERV1 0 6995 3796 2209 105 13 0 chr11 42159422 42159726 -108623827 + AluSp SINE Alu 1 308 -5 29 0 0 0 chr11 42159726 42159755 -108623798 + AT_rich Low_complexity Low_complexity 1 29 0 1692 220 53 12 chr11 42160851 42161265 -108622288 + MLT1C LTR MaLR 34 464 -3 312 132 42 16 chr11 42161290 42161411 -108622142 + CT-rich Low_complexity Low_complexity 1 124 0 35 41 0 0 chr11 42161571 42161620 -108621933 + AT_rich Low_complexity Low_complexity 1 49 0 1693 178 3 17 chr11 42162086 42162384 -108621169 - AluJb SINE Alu -18 294 1 261 252 197 27 chr11 42162410 42162557 -108620996 - MIR SINE MIR -51 211 40 423 269 90 0 chr11 42163240 42163374 -108620179 + MIR SINE MIR 70 215 -47 289 292 100 23 chr11 42163414 42163544 -108620009 - L2 LINE L2 -9 3304 3165 1619 93 0 9 chr11 42163945 42164171 -108619382 + AluSg/x SINE Alu 86 309 -3 249 287 46 19 chr11 42165017 42165125 -108618428 + MIR SINE MIR 81 191 -71 1309 213 56 11 chr11 42165130 42165416 -108618137 + AluJo SINE Alu 2 300 -2 213 169 46 23 chr11 42165627 42165757 -108617796 + (TTATA)n Simple_repeat Simple_repeat 5 137 0 1460 141 26 4 chr11 42166901 42167135 -108616418 - L1PB3 LINE L1 -4 6150 5912 14566 146 42 31 chr11 42167496 42170184 -108613369 + Tigger2 DNA MER2_type 2 2717 -1 187 400 11 11 chr11 42170675 42170765 -108612788 + L2 LINE L2 3141 3230 -42 287 304 26 9 chr11 42172194 42172309 -108611244 - MIR SINE MIR -55 207 91 197 167 19 0 chr11 42175330 42175384 -108608169 + (TA)n Simple_repeat Simple_repeat 2 56 0 280 274 124 90 chr11 42175412 42175481 -108608072 + MLT1J LTR MaLR 159 224 -287 2106 118 3 13 chr11 42175481 42175794 -108607759 - AluSq SINE Alu -3 310 1 280 274 124 90 chr11 42175794 42175958 -108607595 + MLT1J LTR MaLR 224 400 -111 243 0 0 0 chr11 42176014 42176041 -108607512 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1290 217 63 114 chr11 42177997 42178661 -108604892 - L1MC4 LINE L1 -19 8023 7394 1227 245 184 21 chr11 42178672 42179578 -108603975 - L1MD3 LINE L1 -1 7994 6723 2133 115 13 3 chr11 42180374 42180679 -108602874 - AluSg SINE Alu -2 308 1 275 231 0 13 chr11 42180849 42180927 -108602626 + CT-rich Low_complexity Low_complexity 2 78 0 2200 86 0 16 chr11 42181861 42182164 -108601389 - AluSq SINE Alu -15 298 1 202 222 0 37 chr11 42182166 42182220 -108601333 + CT-rich Low_complexity Low_complexity 3 54 0 278 332 107 21 chr11 42184515 42184702 -108598851 + MIR SINE MIR 6 208 -54 258 343 20 20 chr11 42184892 42184994 -108598559 + L2 LINE L2 3171 3272 0 24 67 0 0 chr11 42185080 42185125 -108598428 + AT_rich Low_complexity Low_complexity 1 45 0 22 35 0 0 chr11 42186283 42186312 -108597241 + AT_rich Low_complexity Low_complexity 1 29 0 256 250 24 0 chr11 42186737 42186821 -108596732 + MLT1I LTR MaLR 324 409 0 620 274 95 74 chr11 42188233 42188613 -108594940 + MLT1I LTR MaLR 3 390 -19 21 57 0 0 chr11 42189449 42189484 -108594069 + AT_rich Low_complexity Low_complexity 1 35 0 304 227 0 0 chr11 42189564 42189630 -108593923 - MLT1K LTR MaLR 0 588 523 359 307 39 16 chr11 42189660 42189787 -108593766 - MLT1K LTR MaLR -128 460 331 609 195 125 8 chr11 42189832 42189960 -108593593 - Tigger7 DNA MER2_type -561 144 2 659 178 67 7 chr11 42190499 42190634 -108592919 - FLAM_C SINE Alu 0 143 1 369 0 0 0 chr11 42191157 42191198 -108592355 + (CA)n Simple_repeat Simple_repeat 2 42 0 1166 22 0 0 chr11 42191433 42191569 -108591984 - L1PA7 LINE L1 -274 5880 5745 1831 69 0 29 chr11 42191569 42191838 -108591715 + L1PA7 LINE L1 5889 6154 0 21 0 0 0 chr11 42191944 42191965 -108591588 + AT_rich Low_complexity Low_complexity 1 21 0 2479 103 17 3 chr11 42192044 42192394 -108591159 + THE1A LTR MaLR 1 355 0 10793 94 13 22 chr11 42192394 42193983 -108589570 + THE1A-int LTR MaLR 1 1575 -5 1815 123 0 78 chr11 42193993 42194376 -108589177 + THE1A LTR MaLR 3 355 0 236 229 0 21 chr11 42194376 42194424 -108589129 - L2 LINE L2 -268 3045 2999 180 0 0 0 chr11 42194815 42194835 -108588718 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2196 101 0 7 chr11 42195443 42195749 -108587804 + AluY SINE Alu 1 304 -7 192 368 70 9 chr11 42195920 42196034 -108587519 - MIR SINE MIR -137 125 5 222 150 0 0 chr11 42196636 42196676 -108586877 + (TG)n Simple_repeat Simple_repeat 1 40 0 265 393 50 7 chr11 42198055 42198195 -108585358 - MIR SINE MIR -71 191 46 1386 184 53 28 chr11 42198385 42198667 -108584886 + AluJb SINE Alu 5 293 -19 360 309 45 72 chr11 42198998 42199374 -108584179 - MLT1L LTR MaLR -137 478 113 1626 120 4 23 chr11 42199529 42199788 -108583765 - AluSx SINE Alu -58 254 1 1345 186 68 4 chr11 42199837 42200116 -108583437 - L1P LINE L1 -2223 3923 3627 2120 150 17 3 chr11 42200118 42200478 -108583075 + L1PA16 LINE L1 5797 6161 -5 1375 246 84 25 chr11 42204031 42204531 -108579022 - MER39 LTR ERV1 0 682 1 224 294 15 0 chr11 42204531 42204599 -108578954 + L2 LINE L2 2606 2674 -640 3725 153 35 23 chr11 42204609 42205303 -108578250 - MER39 LTR ERV1 -5 702 1 338 269 0 13 chr11 42205304 42205382 -108578171 + L2 LINE L2 2672 2748 -566 691 182 62 73 chr11 42205390 42205462 -108578091 - MLT1D LTR MaLR 0 505 434 1931 148 154 5 chr11 42205462 42205833 -108577720 - MSTA LTR MaLR 0 428 3 691 182 62 73 chr11 42205833 42205952 -108577601 - MLT1D LTR MaLR -71 434 316 * 3162 161 29 19 chr11 42205947 42206530 -108577023 + MER39B LTR ERV1 65 653 0 1193 236 49 3 chr11 42206530 42206807 -108576746 - MLT1D LTR MaLR -189 316 27 748 289 105 36 chr11 42207074 42207791 -108575762 + L1ME3A LINE L1 5188 5952 -218 23 0 0 0 chr11 42208860 42208883 -108574670 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr11 42212113 42212140 -108571413 + AT_rich Low_complexity Low_complexity 1 27 0 28 48 0 0 chr11 42213778 42213820 -108569733 + AT_rich Low_complexity Low_complexity 1 42 0 520 311 0 20 chr11 42213876 42214024 -108569529 - MIR SINE MIR -112 150 6 2401 60 0 0 chr11 42214368 42214653 -108568900 + AluY SINE Alu 1 285 -26 182 387 13 0 chr11 42214709 42214784 -108568769 + MIR SINE MIR 187 262 0 189 121 0 0 chr11 42215072 42215105 -108568448 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 409 278 34 51 chr11 42215209 42215385 -108568168 - L2 LINE L2 -33 3280 3108 1308 253 8 23 chr11 42215605 42216084 -108567469 + L1M4 LINE L1 2863 3334 -2812 528 278 210 4 chr11 42216093 42216374 -108567179 - L1M4 LINE L1 -1601 4545 4207 1646 95 0 9 chr11 42216385 42216607 -108566946 + AluSq SINE Alu 76 295 -18 230 264 48 96 chr11 42216621 42216788 -108566765 - L2 LINE L2 -1501 1813 1655 207 0 0 0 chr11 42217973 42217996 -108565557 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 180 77 0 0 chr11 42218496 42218522 -108565031 + (TTA)n Simple_repeat Simple_repeat 2 27 0 227 176 20 0 chr11 42219270 42219321 -108564232 + HsTC2 DNA Tc2 6 57 -1841 2009 215 32 24 chr11 42219361 42219895 -108563658 - L1 LINE L1 -946 5200 4663 626 149 36 18 chr11 42219969 42220137 -108563416 + GA-rich Low_complexity Low_complexity 3 173 0 4577 170 46 25 chr11 42220139 42220623 -108562930 + L1MA9 LINE L1 5293 5765 -547 363 105 0 0 chr11 42220623 42220680 -108562873 + (CA)n Simple_repeat Simple_repeat 2 58 0 4577 170 46 25 chr11 42220680 42221194 -108562359 + L1MA9 LINE L1 5765 6312 0 324 262 55 35 chr11 42221216 42221418 -108562135 + HsTC2 DNA Tc2 1649 1854 -44 218 31 0 31 chr11 42221664 42221696 -108561857 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 1864 123 0 51 chr11 42221701 42221993 -108561560 - AluSx SINE Alu -35 277 1 5147 49 0 17 chr11 42222569 42223261 -108560292 - L1P LINE L1 -4064 2082 1403 * 25534 30 3 9 chr11 42223259 42227258 -108556295 + L1PA3 LINE L1 2182 6155 0 262 315 35 112 chr11 42227727 42227959 -108555594 - L2 LINE L2 -22 3291 3078 535 301 136 29 chr11 42228015 42228434 -108555119 - HAL1 LINE L1 -1244 1263 800 274 236 47 95 chr11 42228456 42228604 -108554949 + MLT1D LTR MaLR 4 144 -482 798 155 16 96 chr11 42228644 42228831 -108554722 + MLT1D LTR MaLR 334 505 0 4432 96 0 21 chr11 42229688 42230397 -108553156 + L1PA3 LINE L1 5462 6155 0 189 0 0 0 chr11 42231781 42231802 -108551751 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 244 233 33 0 chr11 42232027 42232087 -108551466 + GA-rich Low_complexity Low_complexity 1 62 0 14273 148 26 21 chr11 42233253 42235103 -108548450 - Tigger4(Zombi) DNA MER2_type 0 2731 864 2141 76 0 73 chr11 42235103 42235432 -108548121 - AluY SINE Alu -6 305 1 14273 148 26 21 chr11 42235432 42236078 -108547475 - Tigger4(Zombi) DNA MER2_type -1867 864 223 2293 253 48 40 chr11 42236128 42236852 -108546701 + MER21B LTR ERV1 27 756 -107 1964 179 129 18 chr11 42237454 42237671 -108545882 + L1MB5 LINE L1 5677 5869 -305 1716 205 8 16 chr11 42237671 42238037 -108545516 - MLT1A1 LTR MaLR -2 363 1 1964 179 129 18 chr11 42238037 42238263 -108545290 + L1MB5 LINE L1 5869 6174 0 625 311 111 36 chr11 42238573 42238846 -108544707 - L2 LINE L2 0 3313 3062 2186 126 39 17 chr11 42238846 42239202 -108544351 - THE1B LTR MaLR 0 364 1 625 311 111 36 chr11 42239202 42239433 -108544120 - L2 LINE L2 -251 3062 2768 245 138 0 17 chr11 42240621 42240679 -108542874 + (CA)n Simple_repeat Simple_repeat 1 57 0 231 109 16 31 chr11 42240683 42240747 -108542806 + (TTTTTA)n Simple_repeat Simple_repeat 3 65 0 6357 21 1 5 chr11 42240749 42241509 -108542044 - L1PA4 LINE L1 -3 6152 5396 23 0 0 0 chr11 42241509 42241532 -108542021 + AT_rich Low_complexity Low_complexity 1 23 0 33 85 0 0 chr11 42242068 42242150 -108541403 + AT_rich Low_complexity Low_complexity 1 82 0 1023 294 65 20 chr11 42242610 42242969 -108540584 - L1ME3 LINE L1 -46 6116 5722 1446 173 30 104 chr11 42242969 42243363 -108540190 - MLT1A1 LTR MaLR 0 365 1 1023 294 65 20 chr11 42243363 42243585 -108539968 - L1ME3 LINE L1 -440 5722 5511 1442 274 74 13 chr11 42243598 42244270 -108539283 - L1ME3 LINE L1 -1062 5084 4372 25 83 0 0 chr11 42244287 42244335 -108539218 + AT_rich Low_complexity Low_complexity 1 48 0 1252 276 104 8 chr11 42244338 42245009 -108538544 - L1ME3 LINE L1 -2911 3235 2500 669 251 60 50 chr11 42245303 42245622 -108537931 - L1ME3 LINE L1 -3704 2442 2121 642 253 19 7 chr11 42245722 42245876 -108537677 + MER58A DNA MER1_type 9 164 0 423 229 21 8 chr11 42247781 42247896 -108535657 + L1ME1 LINE L1 6064 6182 -2 35 45 0 0 chr11 42248149 42248193 -108535360 + AT_rich Low_complexity Low_complexity 1 44 0 1007 122 13 0 chr11 42248193 42248349 -108535204 - L1PB1 LINE L1 -1 6150 5993 714 81 36 0 chr11 42248349 42248460 -108535093 + L1PB1 LINE L1 5713 5827 -324 309 397 23 11 chr11 42248463 42248637 -108534916 - MIR SINE MIR -83 179 4 303 71 0 0 chr11 42248707 42248749 -108534804 + (ATG)n Simple_repeat Simple_repeat 3 44 0 325 325 25 31 chr11 42248806 42248966 -108534587 - MIR SINE MIR -32 230 72 219 36 0 0 chr11 42250776 42250804 -108532749 + (GA)n Simple_repeat Simple_repeat 2 29 0 25 51 0 0 chr11 42251677 42251716 -108531837 + AT_rich Low_complexity Low_complexity 1 39 0 213 231 0 19 chr11 42252657 42252709 -108530844 + (CATA)n Simple_repeat Simple_repeat 4 54 0 198 358 73 36 chr11 42253020 42253157 -108530396 - MIR SINE MIR -115 147 6 201 196 0 0 chr11 42253191 42253237 -108530316 + (TG)n Simple_repeat Simple_repeat 1 46 0 10561 54 1 9 chr11 42253602 42254999 -108528554 - L1PA5 LINE L1 -1936 4210 2825 9069 54 14 2 chr11 42254996 42256930 -108526623 + L1PA5 LINE L1 4215 6152 -2 2331 301 114 55 chr11 42257044 42258763 -108524790 - L2 LINE L2 -50 3263 1437 515 330 133 0 chr11 42258780 42258983 -108524570 + MIR SINE MIR 12 241 -21 2231 88 0 7 chr11 42259064 42259361 -108524192 - AluY SINE Alu -16 295 1 1909 101 0 8 chr11 42259708 42259976 -108523577 - AluY SINE Alu -16 295 30 2479 53 0 50 chr11 42260230 42260552 -108523001 + AluY SINE Alu 2 307 -4 186 264 0 88 chr11 42261599 42261690 -108521863 - L2 LINE L2 -10 3303 3221 2332 72 0 3 chr11 42261883 42262174 -108521379 + AluY SINE Alu 1 290 -21 2926 214 23 12 chr11 42263680 42264340 -108519213 + Tigger7 DNA MER2_type 2 668 -1819 588 127 0 148 chr11 42264356 42264498 -108519055 + Tigger7 DNA MER2_type 2455 2575 -12 365 241 11 0 chr11 42264548 42264635 -108518918 - MIR SINE MIR -2 260 173 2380 190 51 68 chr11 42264663 42265369 -108518184 + LTR8A LTR ERV1 34 727 0 608 289 126 16 chr11 42265719 42265965 -108517588 - LTR16A LTR ERVL 0 450 178 325 219 0 0 chr11 42266104 42266177 -108517376 - MER116 DNA Mariner -7 73 1 758 238 30 26 chr11 42266634 42266865 -108516688 - MLT1D LTR MaLR -273 232 1 5573 223 22 92 chr11 42268005 42269762 -108513791 + L1MA9 LINE L1 3 1637 -5531 501 224 24 0 chr11 42269762 42269887 -108513666 + L1MA9 LINE L1 1921 2048 -5120 2676 207 69 36 chr11 42269912 42270428 -108513125 + L1MA9 LINE L1 6434 6986 -347 189 0 0 0 chr11 42270428 42270449 -108513104 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2676 207 69 36 chr11 42270449 42270714 -108512839 + L1MA9 LINE L1 6986 7241 -92 213 195 0 24 chr11 42270716 42270757 -108512796 + (TG)n Simple_repeat Simple_repeat 2 41 0 28 0 0 0 chr11 42270799 42270827 -108512726 + AT_rich Low_complexity Low_complexity 1 28 0 354 320 62 8 chr11 42272274 42272530 -108511023 - L1ME LINE L1 -317 5804 5535 1478 217 41 78 chr11 42272927 42273545 -108510008 - LTR28 LTR ERV1 -67 953 298 520 197 21 21 chr11 42273598 42273752 -108509801 - LTR28 LTR ERV1 -292 133 1 1147 191 0 13 chr11 42273846 42274077 -108509476 - L1PA16 LINE L1 -9 6157 5930 484 139 12 12 chr11 42274078 42274164 -108509389 + L1MC1 LINE L1 6244 6329 -4 960 126 0 0 chr11 42274637 42274788 -108508765 + (TA)n Simple_repeat Simple_repeat 2 152 0 2289 43 54 0 chr11 42274788 42275066 -108508487 - AluY SINE Alu -18 293 1 329 303 101 0 chr11 42275438 42275616 -108507937 + Charlie8 DNA MER1_type 70 265 -2152 247 329 24 12 chr11 42275901 42275983 -108507570 - L2 LINE L2 -16 3297 3215 614 199 0 23 chr11 42276297 42276473 -108507080 + (TA)n Simple_repeat Simple_repeat 1 172 0 406 295 81 23 chr11 42276502 42276675 -108506878 - MIR SINE MIR -48 214 32 1062 229 4 8 chr11 42277405 42277641 -108505912 + MLT1E2 LTR MaLR 389 623 -3 1676 64 57 43 chr11 42277867 42278148 -108505405 + AluY SINE Alu 1 285 -26 1834 113 0 39 chr11 42278866 42279177 -108504376 - AluSx SINE Alu -13 299 1 354 213 14 28 chr11 42279735 42279876 -108503677 + (CATA)n Simple_repeat Simple_repeat 4 142 0 326 216 23 45 chr11 42279882 42279970 -108503583 - L1MC4 LINE L1 -1340 6702 6617 1719 213 109 9 chr11 42280084 42280534 -108503019 - MER50 LTR ERV1 0 734 240 391 149 15 0 chr11 42280618 42280685 -108502868 - MER50 LTR ERV1 -657 77 10 564 308 43 53 chr11 42280882 42281181 -108502372 + L2 LINE L2 3013 3308 -5 252 170 0 0 chr11 42281259 42281312 -108502241 + GA-rich Low_complexity Low_complexity 3 55 0 2785 148 82 59 chr11 42281408 42282016 -108501537 + LTR29 LTR ERV1 1 622 0 1312 132 15 0 chr11 42282605 42282809 -108500744 - LTR62 LTR ERVK -2 717 511 974 166 32 0 chr11 42282805 42282992 -108500561 - MER50 LTR ERV1 -23 711 519 * 1260 183 109 67 chr11 42282995 42283427 -108500126 + LTR7 LTR ERV1 1 450 0 14519 171 24 35 chr11 42283427 42288673 -108494880 + HERVH LTR ERV1 1 4915 -2287 1372 180 4 0 chr11 42288670 42288937 -108494616 + HERVH LTR ERV1 5749 6016 -1697 * 3296 102 11 33 chr11 42288930 42289500 -108494053 + HERVH LTR ERV1 7157 7713 0 1299 178 102 60 chr11 42289500 42289932 -108493621 + LTR7 LTR ERV1 1 450 0 2015 178 0 6 chr11 42289932 42290297 -108493256 - MER50 LTR ERV1 -214 520 158 4744 118 4 31 chr11 42290300 42290932 -108492621 + L1MA2 LINE L1 5495 6102 -202 2216 91 7 0 chr11 42290932 42291217 -108492336 + AluSq SINE Alu 1 287 -26 4744 118 4 31 chr11 42291217 42291390 -108492163 + L1MA2 LINE L1 6102 6278 -26 1173 176 36 24 chr11 42291390 42291640 -108491913 + THE1C LTR MaLR 123 375 0 8226 143 63 20 chr11 42291643 42293155 -108490398 + THE1C-int LTR MaLR 4 1580 0 1733 184 18 44 chr11 42293155 42293540 -108490013 + THE1C LTR MaLR 1 375 0 2052 102 27 24 chr11 42293580 42293874 -108489679 + AluSx SINE Alu 1 295 -17 298 291 64 9 chr11 42294555 42294665 -108488888 - MIR SINE MIR -61 201 86 27 0 0 0 chr11 42295318 42295345 -108488208 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr11 42295473 42295494 -108488059 + AT_rich Low_complexity Low_complexity 1 21 0 1884 137 0 3 chr11 42296309 42296618 -108486935 - AluSq SINE Alu 0 308 1 275 325 102 51 chr11 42296690 42296945 -108486608 + L2 LINE L2 2839 3106 -166 264 59 0 0 chr11 42297189 42297223 -108486330 + (TG)n Simple_repeat Simple_repeat 2 35 0 2408 65 13 0 chr11 42297579 42297885 -108485668 + AluY SINE Alu 1 310 -1 235 179 18 0 chr11 42299562 42299618 -108483935 + MER53 DNA DNA 132 188 -1 453 62 0 0 chr11 42299732 42299797 -108483756 + (CA)n Simple_repeat Simple_repeat 2 66 0 7397 131 48 5 chr11 42302623 42303909 -108479644 - Tigger1 DNA MER2_type 0 2418 1077 33939 44 3 2 chr11 42303910 42310056 -108473497 + L1PA4 LINE L1 1 6152 -3 5939 173 26 6 chr11 42310060 42311130 -108472423 - Tigger1 DNA MER2_type -1326 1092 1 1332 31 0 0 chr11 42311556 42311715 -108471838 + L1PA4 LINE L1 5996 6154 -1 42 89 0 0 chr11 42312309 42312421 -108471132 + AT_rich Low_complexity Low_complexity 1 112 0 2533 46 0 10 chr11 42312498 42312803 -108470750 + AluY SINE Alu 1 302 -9 42 36 0 0 chr11 42314308 42314364 -108469189 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr11 42314509 42314530 -108469023 + AT_rich Low_complexity Low_complexity 1 21 0 229 262 48 24 chr11 42315050 42315134 -108468419 + MIR SINE MIR 147 232 -30 1574 154 33 0 chr11 42316223 42316495 -108467058 - L1PBa LINE L1 -6577 286 6 2336 97 0 3 chr11 42316699 42317010 -108466543 + AluY SINE Alu 1 310 -1 24 32 0 0 chr11 42317845 42317876 -108465677 + AT_rich Low_complexity Low_complexity 1 31 0 303 186 0 0 chr11 42318817 42318914 -108464639 + (TA)n Simple_repeat Simple_repeat 2 98 0 34 0 0 0 chr11 42319069 42319103 -108464450 + AT_rich Low_complexity Low_complexity 1 34 0 320 254 158 18 chr11 42319709 42319823 -108463730 + L2 LINE L2 3183 3312 -1 409 311 88 20 chr11 42320163 42320414 -108463139 + L1M4 LINE L1 2785 3052 -3094 358 336 96 48 chr11 42320477 42320893 -108462660 - L2 LINE L2 -5 3308 2873 2746 3 0 13 chr11 42320948 42321253 -108462300 - AluYa5 SINE Alu -10 301 1 1385 235 97 20 chr11 42321339 42321743 -108461810 - MER70B LTR ERVL -143 435 1 430 327 53 45 chr11 42321745 42322011 -108461542 - L2 LINE L2 -499 2815 2548 460 284 123 50 chr11 42322115 42322457 -108461096 + L1MC/D LINE L1 5406 5772 -2036 313 275 168 23 chr11 42322677 42322808 -108460745 + L2 LINE L2 3161 3310 -3 203 312 92 28 chr11 42322848 42322989 -108460564 + MIR3 SINE MIR 57 206 -2 28 0 0 0 chr11 42323171 42323199 -108460354 + AT_rich Low_complexity Low_complexity 1 28 0 30 83 0 0 chr11 42323872 42323944 -108459609 + AT_rich Low_complexity Low_complexity 1 72 0 337 316 7 45 chr11 42324024 42324075 -108459478 + MLT1I LTR MaLR 58 109 -300 2370 123 11 11 chr11 42324075 42324450 -108459103 + THE1C LTR MaLR 1 375 0 337 316 7 45 chr11 42324450 42324553 -108459000 + MLT1I LTR MaLR 109 206 -203 369 296 55 67 chr11 42326039 42326329 -108457224 + MLT1H LTR MaLR 19 341 -188 373 318 53 108 chr11 42326493 42326871 -108456682 + L2 LINE L2 2916 3272 0 22 0 0 0 chr11 42327222 42327244 -108456309 + AT_rich Low_complexity Low_complexity 1 22 0 295 358 78 44 chr11 42329214 42329591 -108453962 - L2 LINE L2 -174 3139 2748 1142 221 9 5 chr11 42329591 42329808 -108453745 + MER20 DNA MER1_type 1 218 -1 295 358 78 44 chr11 42329808 42329900 -108453653 - L2 LINE L2 -565 2748 2661 1839 215 8 0 chr11 42330678 42331031 -108452522 + MLT1A1 LTR MaLR 8 363 -2 238 370 84 25 chr11 42331033 42331152 -108452401 + MIR SINE MIR 26 151 -111 268 266 26 44 chr11 42331754 42331867 -108451686 - MIR SINE MIR -95 167 57 2840 3 0 0 chr11 42332564 42332868 -108450685 - AluYa5 SINE Alu -7 304 1 2007 88 68 24 chr11 42333196 42333490 -108450063 - AluY SINE Alu -4 307 1 6395 173 63 107 chr11 42333811 42335424 -108448129 - MER52A LTR ERV1 0 1755 215 297 224 0 40 chr11 42335914 42335990 -108447563 - MER52A LTR ERV1 -1682 73 1 185 341 66 22 chr11 42336240 42336331 -108447222 + MIR SINE MIR 49 143 -119 360 200 0 0 chr11 42336566 42336641 -108446912 + (TA)n Simple_repeat Simple_repeat 2 76 0 2561 65 0 0 chr11 42336641 42336948 -108446605 - AluY SINE Alu -4 307 1 2084 103 0 7 chr11 42338096 42338378 -108445175 - AluSg1 SINE Alu -29 280 1 222 346 45 26 chr11 42338990 42339146 -108444407 - MIR SINE MIR -95 167 9 183 405 0 9 chr11 42339408 42339524 -108444029 - MIR3 SINE MIR -2 206 92 24 32 0 0 chr11 42339609 42339640 -108443913 + AT_rich Low_complexity Low_complexity 1 31 0 2162 131 33 38 chr11 42339755 42340121 -108443432 + THE1B LTR MaLR 1 364 0 694 310 98 12 chr11 42340265 42340591 -108442962 + MLT1J LTR MaLR 82 435 -76 2079 115 7 10 chr11 42340614 42340910 -108442643 - AluSx SINE Alu -17 295 1 25 0 0 0 chr11 42341200 42341225 -108442328 + AT_rich Low_complexity Low_complexity 1 25 0 181 414 39 8 chr11 42341346 42341474 -108442079 + L2 LINE L2 3125 3256 -16 843 291 52 61 chr11 42341806 42342348 -108441205 + L2 LINE L2 2763 3299 -14 2068 182 14 14 chr11 42342567 42342936 -108440617 + MLT1B LTR MaLR 22 390 0 221 245 19 0 chr11 42343077 42343130 -108440423 + GA-rich Low_complexity Low_complexity 2 55 0 212 239 0 0 chr11 42344880 42344926 -108438627 + GA-rich Low_complexity Low_complexity 3 48 0 337 302 57 31 chr11 42344967 42345126 -108438427 - L3 LINE CR1 -256 1321 1159 357 229 48 84 chr11 42345160 42345326 -108438227 - L2 LINE L2 -37 3276 3117 593 249 81 5 chr11 42345546 42345755 -108437798 + L1MD3 LINE L1 7758 7982 -13 798 285 45 78 chr11 42345810 42346439 -108437114 + L1MC4a LINE L1 5350 5957 -1851 7630 47 10 9 chr11 42346441 42348180 -108435373 - L1PA5 LINE L1 -2 6152 4410 12926 51 3 1 chr11 42348180 42349833 -108433720 + L1PA5 LINE L1 2749 4405 -1741 804 293 153 47 chr11 42349860 42350794 -108432759 + L1MC4a LINE L1 5954 7006 -802 213 94 0 0 chr11 42350794 42350826 -108432727 + (TAA)n Simple_repeat Simple_repeat 1 32 0 804 293 153 47 chr11 42350826 42350907 -108432646 + L1MC4a LINE L1 7006 7077 -731 2100 138 0 3 chr11 42350912 42351223 -108432330 + AluSg SINE Alu 1 310 0 431 305 119 52 chr11 42351323 42351430 -108432123 + L1MC4 LINE L1 7344 7442 -600 1150 195 22 123 chr11 42351430 42351836 -108431717 + MLT1A1 LTR MaLR 1 365 0 431 305 119 52 chr11 42351836 42352133 -108431420 + L1MC4 LINE L1 7442 7718 -324 1742 182 17 0 chr11 42352133 42352484 -108431069 - L1MA6 LINE L1 0 6300 5944 431 305 119 52 chr11 42352484 42352669 -108430884 + L1MC4 LINE L1 7718 7985 -57 2130 140 10 39 chr11 42352669 42353055 -108430498 - THE1C LTR MaLR 0 375 1 431 305 119 52 chr11 42353055 42353118 -108430435 + L1MC4 LINE L1 7985 8042 0 246 288 82 38 chr11 42354129 42354313 -108429240 + MLT1K LTR MaLR 397 588 0 1347 253 43 32 chr11 42355563 42356025 -108427528 + MLT1C LTR MaLR 1 467 0 1556 287 41 14 chr11 42356560 42356996 -108426557 + L1M3a LINE L1 3 450 -5505 243 373 39 13 chr11 42357126 42357279 -108426274 + L1M3a LINE L1 305 461 -5494 * 2460 277 46 23 chr11 42357263 42358660 -108424893 + L1M3a LINE L1 302 1714 -4321 * 19073 151 29 90 chr11 42358641 42363046 -108420507 + L1P LINE L1 6 4141 -2005 856 273 67 64 chr11 42363151 42363496 -108420057 - MLT1E2 LTR MaLR -66 560 215 339 358 133 28 chr11 42363837 42364055 -108419498 + MIR SINE MIR 7 247 -15 2095 125 0 0 chr11 42364787 42365099 -108418454 - AluSg1 SINE Alu 0 312 1 2264 53 7 4 chr11 42365218 42365539 -108418014 + AluY SINE Alu 1 322 0 10462 103 11 3 chr11 42365599 42367153 -108416400 + L1P LINE L1 2953 4518 -1628 1591 200 3 31 chr11 42367528 42367848 -108415705 - AluJb SINE Alu -1 311 1 345 24 0 0 chr11 42367921 42367963 -108415590 + (TG)n Simple_repeat Simple_repeat 2 43 0 2390 89 0 0 chr11 42368119 42368422 -108415131 - AluY SINE Alu -8 303 1 3032 270 58 48 chr11 42368773 42369844 -108413709 + L1M4b LINE L1 11 1092 -5767 226 244 141 67 chr11 42370243 42370378 -108413175 + MIR SINE MIR 91 235 -27 1844 159 17 0 chr11 42370386 42370681 -108412872 - AluJo SINE Alu -10 302 3 5662 113 38 0 chr11 42370786 42372004 -108411549 - L1PA13 LINE L1 -4 6159 4935 192 204 23 0 chr11 42372808 42372852 -108410701 - MIR SINE MIR -56 206 162 2059 117 0 7 chr11 42372971 42373252 -108410301 - AluSc SINE Alu -30 279 1 1505 197 24 38 chr11 42373361 42373731 -108409822 + MLT1A1 LTR MaLR 1 365 0 246 215 124 0 chr11 42377551 42377672 -108405881 - MER113 DNA MER1_type? -326 195 60 184 325 130 0 chr11 42377919 42377996 -108405557 + MIR SINE MIR 119 205 -57 5158 240 93 15 chr11 42378289 42380182 -108403371 - L1M LINE L1 -756 5390 3357 886 250 159 34 chr11 42380182 42380566 -108402987 - MLT1C LTR MaLR -2 465 34 403 196 108 32 chr11 42380574 42380732 -108402821 - L1M4 LINE L1 -5146 1396 1227 2249 269 80 25 chr11 42380801 42382264 -108401289 - L1MEc LINE L1 -2833 4124 2619 1493 264 114 26 chr11 42382275 42383078 -108400475 - L1MEc LINE L1 -4644 2315 1412 2301 100 0 3 chr11 42383078 42383389 -108400164 - AluY SINE Alu -1 310 1 1493 264 114 26 chr11 42383389 42383547 -108400006 - L1MEc LINE L1 -5547 1412 1269 360 188 62 0 chr11 42383558 42383622 -108399931 - L1MEc LINE L1 -5666 1193 1126 254 222 119 82 chr11 42383727 42383970 -108399583 + L1MC5 LINE L1 7401 7652 -309 307 300 22 0 chr11 42384123 42384213 -108399340 - L1MC4 LINE L1 -1337 6705 6614 * 322 274 48 0 chr11 42384161 42384245 -108399308 + L1MC4 LINE L1 6614 6701 -1341 2663 159 8 10 chr11 42384246 42384725 -108398828 + L1PA16 LINE L1 5687 6164 -2 24 67 0 0 chr11 42384818 42384863 -108398690 + AT_rich Low_complexity Low_complexity 1 45 0 25 75 0 0 chr11 42385138 42385191 -108398362 + AT_rich Low_complexity Low_complexity 1 53 0 213 178 0 0 chr11 42385374 42385419 -108398134 + (CATATA)n Simple_repeat Simple_repeat 5 49 0 1868 121 23 0 chr11 42386085 42386341 -108397212 + AluSx SINE Alu 36 297 -15 197 315 155 28 chr11 42386464 42386645 -108396908 + MIR SINE MIR 59 262 0 7366 39 0 0 chr11 42386815 42388308 -108395245 - L1PA4 LINE L1 -1 6154 4660 2928 120 0 17 chr11 42389578 42390037 -108393516 + L1P LINE L1 4326 4776 -1370 1846 139 26 71 chr11 42390026 42390408 -108393145 + THE1C-int LTR MaLR 1216 1580 0 * 1481 119 122 86 chr11 42390408 42390770 -108392783 + THE1C LTR MaLR 1 375 0 1954 273 45 14 chr11 42390918 42391490 -108392063 - MLT1G LTR MaLR 0 590 1 2237 101 0 3 chr11 42391719 42392015 -108391538 - AluSc SINE Alu -14 295 1 427 253 66 66 chr11 42392114 42392296 -108391257 - MIR SINE MIR -3 259 78 2191 118 0 3 chr11 42394097 42394401 -108389152 - AluSg1 SINE Alu -1 308 6 2297 130 23 3 chr11 42394408 42394762 -108388791 - THE1B LTR MaLR -3 361 1 9700 123 6 68 chr11 42394762 42396447 -108387106 - THE1B-int LTR MaLR 0 1580 1 2145 114 99 6 chr11 42396447 42396780 -108386773 - THE1B LTR MaLR 0 364 1 448 320 161 32 chr11 42397452 42397830 -108385723 + LTR33 LTR ERVL 24 450 -71 204 245 0 0 chr11 42397900 42397949 -108385604 - L2 LINE L2 0 3313 3265 832 136 38 0 chr11 42397995 42398127 -108385426 + MER72 LTR ERV1 586 722 0 881 150 6 35 chr11 42398687 42398860 -108384693 + LTR49-int LTR ERV1 1040 1207 -5124 351 257 0 27 chr11 42398862 42398936 -108384617 + tRNA-Glu-GAG tRNA tRNA 3 74 -1 497 186 0 0 chr11 42399151 42399237 -108384316 + LTR49-int LTR ERV1 1410 1495 -4836 3666 229 60 6 chr11 42399248 42399283 -108384270 + L1PA16 LINE L1 4737 4769 -1397 2020 193 68 2 chr11 42399283 42399683 -108383870 - MSTB LTR MaLR 0 426 1 3666 229 60 6 chr11 42399683 42400989 -108382564 + L1PA16 LINE L1 4769 6165 -1 1278 305 145 25 chr11 42400995 42401184 -108382369 - L2 LINE L2 -76 3237 3072 1601 212 42 16 chr11 42401184 42401562 -108381991 + MLT1B LTR MaLR 1 388 -2 1278 305 145 25 chr11 42401562 42402228 -108381325 - L2 LINE L2 -241 3072 2262 1730 199 3 0 chr11 42402880 42403172 -108380381 - AluJb SINE Alu -19 293 1 1869 176 0 0 chr11 42403646 42403941 -108379612 + AluJb SINE Alu 1 295 -17 318 274 132 0 chr11 42404298 42404404 -108379149 - MLT1L LTR MaLR -147 468 349 180 155 0 82 chr11 42405352 42405449 -108378104 + GA-rich Low_complexity Low_complexity 4 92 0 226 271 0 14 chr11 42405502 42405572 -108377981 + GA-rich Low_complexity Low_complexity 1 69 0 1575 172 29 11 chr11 42405627 42405906 -108377647 + AluJo SINE Alu 1 284 -28 369 0 0 0 chr11 42405906 42405947 -108377606 + (CA)n Simple_repeat Simple_repeat 2 42 0 2379 106 19 21 chr11 42405978 42406354 -108377199 + THE1C LTR MaLR 1 375 0 181 368 105 26 chr11 42406628 42406818 -108376735 + MIR SINE MIR 6 210 -52 280 96 173 0 chr11 42407056 42407108 -108376445 - MADE1 DNA Mariner 0 80 20 2380 88 3 0 chr11 42407532 42407829 -108375724 - AluSp SINE Alu -15 298 1 25 51 0 0 chr11 42408033 42408072 -108375481 + AT_rich Low_complexity Low_complexity 1 39 0 6488 82 3 1 chr11 42408179 42409675 -108373878 + L1PA7 LINE L1 4632 6141 -13 22 0 0 0 chr11 42409826 42409848 -108373705 + AT_rich Low_complexity Low_complexity 1 22 0 2138 94 17 7 chr11 42410417 42410714 -108372839 - AluY SINE Alu -11 300 1 40972 46 29 1 chr11 42411019 42416988 -108366565 + L1PA3 LINE L1 1 6136 -19 258 32 0 0 chr11 42416992 42417023 -108366530 + (TAA)n Simple_repeat Simple_repeat 3 33 0 31583 51 1 2 chr11 42418217 42422247 -108361306 + L1P LINE L1 1006 5034 -1112 211 238 12 83 chr11 42422748 42422832 -108360721 + MIR3 SINE MIR 100 177 -31 227 280 131 17 chr11 42422969 42423144 -108360409 - LTR37B LTR ERV1 -268 200 6 313 240 27 0 chr11 42423616 42423691 -108359862 - Charlie1 DNA MER1_type 0 2761 2685 41658 39 26 1 chr11 42423722 42429720 -108353833 + L1PA2 LINE L1 2 6152 -3 261 0 0 0 chr11 42429746 42429775 -108353778 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2049 241 98 10 chr11 42429782 42430587 -108352966 - Charlie1 DNA MER1_type -100 2661 1786 1097 243 111 20 chr11 42430584 42430926 -108352627 - Charlie1 DNA MER1_type -2388 373 1 * 279 241 35 69 chr11 42430953 42431156 -108352397 - MER31-int LTR ERV1 -3638 1298 1103 748 226 36 87 chr11 42431848 42432206 -108351347 - LTR37B LTR ERV1 -118 350 11 23 54 0 0 chr11 42432225 42432262 -108351291 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr11 42432732 42432765 -108350788 + AT_rich Low_complexity Low_complexity 1 33 0 327 223 0 43 chr11 42434431 42434525 -108349028 + L1M4 LINE L1 4517 4606 -1540 211 100 0 40 chr11 42434532 42434582 -108348971 + (TG)n Simple_repeat Simple_repeat 2 49 0 707 235 91 29 chr11 42434593 42434836 -108348717 + L1ME3A LINE L1 5912 6169 -1 222 200 0 0 chr11 42435086 42435126 -108348427 + (CA)n Simple_repeat Simple_repeat 1 40 0 216 86 0 0 chr11 42435358 42435393 -108348160 + (CAA)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr11 42435644 42435667 -108347886 + AT_rich Low_complexity Low_complexity 1 23 0 1754 181 0 13 chr11 42435916 42436225 -108347328 + AluJb SINE Alu 3 307 -5 2006 150 0 0 chr11 42436235 42436535 -108347018 + AluSc SINE Alu 1 300 -9 24 0 0 0 chr11 42436607 42436631 -108346922 + AT_rich Low_complexity Low_complexity 1 24 0 507 323 82 26 chr11 42436749 42437210 -108346343 + L1ME4a LINE L1 5464 5950 -171 230 227 191 0 chr11 42437300 42437410 -108346143 + L1ME4a LINE L1 5986 6116 -5 7283 42 7 0 chr11 42438700 42439644 -108343909 + L1PA4 LINE L1 5206 6155 0 959 83 0 0 chr11 42440864 42440996 -108342557 + L1MA2 LINE L1 6173 6304 0 339 154 0 90 chr11 42441020 42441098 -108342455 - AluJ/FLAM SINE Alu -223 79 9 21 36 0 0 chr11 42441866 42441894 -108341659 + AT_rich Low_complexity Low_complexity 1 28 0 1534 167 24 3 chr11 42442343 42442662 -108340891 + L1MA4 LINE L1 5970 6303 0 266 235 252 8 chr11 42442679 42442798 -108340755 + MIR SINE MIR 45 192 -70 2060 128 0 10 chr11 42443553 42443865 -108339688 + AluSg1 SINE Alu 1 309 0 214 179 0 54 chr11 42444441 42444497 -108339056 + (TATG)n Simple_repeat Simple_repeat 3 55 0 330 360 22 15 chr11 42444998 42445134 -108338419 - L2 LINE L2 0 3313 3177 875 201 40 48 chr11 42445415 42445718 -108337835 + MER2 DNA MER2_type 2 344 -1 22 35 0 0 chr11 42445771 42445800 -108337753 + AT_rich Low_complexity Low_complexity 1 29 0 6696 62 0 0 chr11 42447982 42448825 -108334728 + L1PA7 LINE L1 5301 6143 -11 651 265 12 19 chr11 42449377 42449539 -108334014 - MER5B DNA MER1_type -17 161 1 2639 14 0 0 chr11 42449636 42449924 -108333629 - AluYa5 SINE Alu 0 311 24 873 334 51 14 chr11 42450335 42450829 -108332724 + HAL1 LINE L1 4 515 -1992 512 335 74 0 chr11 42450900 42451115 -108332438 + MIR SINE MIR 32 262 0 1179 269 82 27 chr11 42451271 42451893 -108331660 + HAL1 LINE L1 718 1373 -1134 728 255 96 102 chr11 42451978 42452520 -108331033 - L1M4 LINE L1 -1213 4933 4395 454 262 28 7 chr11 42452596 42452741 -108330812 - L1MC4 LINE L1 -143 7899 7752 239 179 200 0 chr11 42454056 42454151 -108329402 + MER5C DNA MER1_type 134 247 -77 252 214 0 36 chr11 42454466 42454522 -108329031 + GA-rich Low_complexity Low_complexity 6 59 0 325 247 43 0 chr11 42454525 42454618 -108328935 - LTR67 LTR ERVL -3 554 458 1752 184 0 3 chr11 42455674 42455967 -108327586 + AluJb SINE Alu 6 297 -15 2282 79 0 0 chr11 42457094 42457372 -108326181 - AluY SINE Alu -13 298 21 1148 176 42 139 chr11 42458497 42458830 -108324723 - MLT1A1 LTR MaLR 0 365 75 1925 57 0 0 chr11 42458830 42459082 -108324471 + AluY SINE Alu 56 307 0 1148 176 42 139 chr11 42459082 42459151 -108324402 - MLT1A1 LTR MaLR -290 75 1 289 242 65 57 chr11 42459220 42459344 -108324209 + LTR16A1 LTR ERVL 331 455 -2 1229 318 42 75 chr11 42459801 42459986 -108323567 - L2 LINE L2 -3 3310 3120 2322 82 0 7 chr11 42459986 42460289 -108323264 + AluY SINE Alu 1 301 -10 1229 318 42 75 chr11 42460289 42460443 -108323110 - L2 LINE L2 -193 3120 2962 186 43 0 0 chr11 42460443 42460466 -108323087 + (TA)n Simple_repeat Simple_repeat 2 24 0 1229 318 42 75 chr11 42460466 42461195 -108322358 - L2 LINE L2 -351 2962 2280 2051 137 0 13 chr11 42461412 42461719 -108321834 - AluSx SINE Alu -9 303 1 1159 268 46 37 chr11 42464387 42464797 -108318756 + L2 LINE L2 2269 2682 -632 1214 259 82 32 chr11 42464896 42465368 -108318185 + MLT2B1 LTR ERVL 1 396 -18 2177 131 20 11 chr11 42467104 42467456 -108316097 + THE1A LTR MaLR 1 355 0 11021 108 8 11 chr11 42467456 42467833 -108315720 + THE1A-int LTR MaLR 1 378 -1202 2183 112 0 16 chr11 42467833 42468146 -108315407 + AluY SINE Alu 1 308 -3 11021 108 8 11 chr11 42468146 42469353 -108314200 + THE1A-int LTR MaLR 378 1580 0 2490 99 8 8 chr11 42469353 42469708 -108313845 + THE1A LTR MaLR 1 355 0 414 0 0 0 chr11 42469921 42469967 -108313586 + (CA)n Simple_repeat Simple_repeat 2 47 0 1883 78 0 48 chr11 42470400 42470671 -108312882 + AluY SINE Alu 36 293 -18 2193 68 0 27 chr11 42470905 42471233 -108312320 - AluY SINE Alu 0 320 1 2420 133 3 5 chr11 42471566 42471942 -108311611 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr11 42472871 42472895 -108310658 + AT_rich Low_complexity Low_complexity 1 24 0 2443 54 20 0 chr11 42473117 42473411 -108310142 + AluY SINE Alu 1 300 -11 2084 134 0 0 chr11 42474315 42474605 -108308948 + AluSc SINE Alu 3 292 -17 246 62 0 0 chr11 42475463 42475495 -108308058 + (A)n Simple_repeat Simple_repeat 1 32 0 298 344 49 31 chr11 42476171 42476334 -108307219 - MIR SINE MIR -86 176 11 23 54 0 0 chr11 42477048 42477085 -108306468 + AT_rich Low_complexity Low_complexity 1 37 0 719 337 95 29 chr11 42477158 42477345 -108306208 - L2 LINE L2 0 3313 3140 711 289 67 39 chr11 42477345 42477705 -108305848 + MLT1A2 LTR MaLR 1 370 -4 719 337 95 29 chr11 42477705 42478322 -108305231 - L2 LINE L2 -173 3140 2450 252 354 81 23 chr11 42478438 42478513 -108305040 - L2 LINE L2 -2349 965 896 2274 103 0 6 chr11 42478513 42478824 -108304729 + AluSc SINE Alu 1 309 0 252 354 81 23 chr11 42478824 42479008 -108304545 - L2 LINE L2 -2418 896 691 1752 193 3 0 chr11 42479545 42479840 -108303713 + AluJb SINE Alu 1 296 -16 1205 134 0 6 chr11 42479927 42480106 -108303447 - AluSg/x SINE Alu -2 310 133 880 183 0 0 chr11 42480106 42480243 -108303310 - Charlie3 DNA MER1_type -2528 182 46 296 145 32 32 chr11 42480258 42480320 -108303233 + Tigger1 DNA MER2_type 1510 1571 -847 240 118 0 0 chr11 42480428 42480462 -108303091 + AluSg SINE Alu 1 34 -265 1269 139 0 10 chr11 42480562 42480763 -108302790 + AluSg/x SINE Alu 106 304 -8 6937 161 126 15 chr11 42481548 42482907 -108300646 + Tigger1 DNA MER2_type 4 1513 -905 3055 155 23 8 chr11 42482910 42483387 -108300166 - MER1A DNA MER1_type 0 529 46 1794 147 7 0 chr11 42483402 42483694 -108299859 + Tigger1 DNA MER2_type 1510 1803 -615 266 230 242 0 chr11 42533794 42533878 -108249675 + MLT1E LTR MaLR 5 108 -485 648 231 81 49 chr11 42533983 42534239 -108249314 + MLT1E LTR MaLR 115 361 -232 285 294 56 82 chr11 42534357 42534660 -108248893 + MLT1J2 LTR MaLR 103 397 -53 21 57 0 0 chr11 42535221 42535256 -108248297 + AT_rich Low_complexity Low_complexity 1 35 0 442 275 63 35 chr11 42536030 42536172 -108247381 - L2 LINE L2 0 3313 3168 24 0 0 0 chr11 42537356 42537380 -108246173 + AT_rich Low_complexity Low_complexity 1 24 0 205 305 158 0 chr11 42538123 42538218 -108245335 - L2 LINE L2 -1 3312 3203 2420 64 3 10 chr11 42538314 42538626 -108244927 - AluY SINE Alu -1 310 1 2136 107 4 0 chr11 42539426 42539707 -108243846 + AluSg SINE Alu 16 297 -13 358 316 163 14 chr11 42539903 42540112 -108243441 + MIR SINE MIR 23 262 0 7381 40 3 0 chr11 42540377 42541470 -108242083 + L1PA4 LINE L1 5060 6155 0 2113 127 3 0 chr11 42541570 42541870 -108241683 - AluSq SINE Alu -12 301 1 503 310 94 33 chr11 42543149 42543362 -108240191 - MIR SINE MIR 0 262 37 1784 151 142 0 chr11 42544554 42544872 -108238681 + THE1B LTR MaLR 1 363 -1 514 222 167 43 chr11 42545142 42545211 -108238342 + MER5A DNA MER1_type 8 67 -122 2414 60 3 7 chr11 42545211 42545513 -108238040 + AluY SINE Alu 1 301 -10 514 222 167 43 chr11 42545513 42545605 -108237948 + MER5A DNA MER1_type 67 189 0 427 320 74 6 chr11 42545622 42545797 -108237756 + MIR SINE MIR 15 201 -61 237 255 21 0 chr11 42545804 42545851 -108237702 - MER20 DNA MER1_type -170 49 2 697 225 46 0 chr11 42545873 42546024 -108237529 + MER20 DNA MER1_type 62 219 0 2302 93 0 3 chr11 42547224 42547525 -108236028 + AluSp SINE Alu 5 304 -9 207 354 53 82 chr11 42548216 42548558 -108234995 + L2 LINE L2 2015 2346 -968 1845 89 4 0 chr11 42548588 42548823 -108234730 + AluSp SINE Alu 58 293 -20 2146 87 0 4 chr11 42549001 42549277 -108234276 - AluSx SINE Alu -8 304 30 869 243 0 0 chr11 42551487 42551660 -108231893 - MER5A DNA MER1_type -3 186 14 2116 165 29 5 chr11 42551877 42552258 -108231295 - MLT1B LTR MaLR 0 390 1 666 207 0 0 chr11 42552592 42552708 -108230845 + FLAM_C SINE Alu 1 116 -17 210 278 0 0 chr11 42553254 42553308 -108230245 + A-rich Low_complexity Low_complexity 1 54 0 291 328 38 23 chr11 42553463 42553594 -108229959 - L2 LINE L2 -4 3268 3136 1568 195 17 23 chr11 42554032 42554334 -108229219 - AluJb SINE Alu -12 300 1 297 313 51 56 chr11 42554524 42554738 -108228815 + MLT1K LTR MaLR 214 426 -162 1542 104 9 13 chr11 42555633 42555864 -108227689 + AluSp SINE Alu 1 230 -83 4981 72 29 4 chr11 42555864 42556547 -108227006 + LTR30 LTR ERV1 23 722 0 702 59 49 0 chr11 42556547 42556649 -108226904 + AluSp SINE Alu 206 312 -1 2015 218 77 8 chr11 42556954 42557022 -108226531 - MER67D LTR ERV1 -3 511 449 294 50 0 0 chr11 42557022 42557062 -108226491 + (GA)n Simple_repeat Simple_repeat 1 40 0 2015 218 77 8 chr11 42557062 42557471 -108226082 - MER67D LTR ERV1 -65 449 1 1621 198 100 28 chr11 42557721 42558150 -108225403 - LTR48 LTR ERV1 -326 461 2 22 0 0 0 chr11 42558286 42558308 -108225245 + AT_rich Low_complexity Low_complexity 1 22 0 203 133 44 0 chr11 42558528 42558573 -108224980 + (TA)n Simple_repeat Simple_repeat 1 47 0 871 305 9 0 chr11 42558627 42558837 -108224716 - MLT1E2 LTR MaLR -93 533 322 237 302 0 0 chr11 42559041 42559127 -108224426 + L1ME LINE L1 5575 5660 -461 2235 205 31 83 chr11 42559178 42559890 -108223663 - LTR8 LTR ERV1 -23 668 3 21 0 0 0 chr11 42559933 42559954 -108223599 + AT_rich Low_complexity Low_complexity 1 21 0 4471 139 19 37 chr11 42561963 42562752 -108220801 + MER4E LTR ERV1 5 779 0 260 200 44 0 chr11 42562796 42562886 -108220667 + (TA)n Simple_repeat Simple_repeat 2 95 0 3449 139 76 37 chr11 42563179 42563292 -108220261 - LTR51 LTR ERV1 0 671 564 1636 144 127 86 chr11 42563292 42563701 -108219852 - MSTA LTR MaLR 0 428 3 3449 139 76 37 chr11 42563701 42564233 -108219320 - LTR51 LTR ERV1 -107 564 1 1438 283 96 28 chr11 42564516 42565342 -108218211 - L2 LINE L2 -1 3312 2376 280 169 345 14 chr11 42565345 42565487 -108218066 + MER53 DNA DNA 1 189 0 6405 67 2 0 chr11 42565527 42566360 -108217193 + L1PA5 LINE L1 1527 2361 -3785 6430 71 28 0 chr11 42566382 42567229 -108216324 - L1PA5 LINE L1 0 6154 5284 23365 55 5 0 chr11 42567229 42571002 -108212551 + L1PA5 LINE L1 2349 6137 -17 359 289 0 0 chr11 42571004 42571094 -108212459 - L1MC4 LINE L1 -1339 6703 6614 13744 139 25 20 chr11 42571270 42573158 -108210395 - Tigger1 DNA MER2_type 0 2418 540 2021 143 0 7 chr11 42573158 42573458 -108210095 - AluSx SINE Alu -14 298 1 13744 139 25 20 chr11 42573458 42573667 -108209886 - Tigger1 DNA MER2_type -1878 540 333 2171 118 0 7 chr11 42573667 42573964 -108209589 - AluSx SINE Alu -17 295 1 13744 139 25 20 chr11 42573964 42574271 -108209282 - Tigger1 DNA MER2_type -2085 333 2 201 171 0 0 chr11 42574469 42574504 -108209049 + T-rich Low_complexity Low_complexity 2 36 0 3014 107 70 16 chr11 42575698 42576183 -108207370 + MER9 LTR ERVK 1 511 0 2335 104 7 0 chr11 42577258 42577566 -108205987 - AluSp SINE Alu -3 310 1 22 0 0 0 chr11 42577668 42577690 -108205863 + AT_rich Low_complexity Low_complexity 1 22 0 413 250 94 0 chr11 42577767 42577927 -108205626 - L1ME LINE L1 -344 5777 5603 1907 135 7 16 chr11 42577927 42578230 -108205323 + AluSx SINE Alu 1 300 -12 401 303 64 52 chr11 42578271 42578522 -108205031 - L2 LINE L2 -18 3295 3042 352 303 45 8 chr11 42578669 42578801 -108204752 - L1ME LINE L1 -2415 5393 5257 238 346 59 52 chr11 42580150 42580303 -108203250 - L2 LINE L2 0 3272 3119 1199 259 122 20 chr11 42581552 42581954 -108201599 - MLT1H LTR MaLR -105 444 2 1485 156 0 8 chr11 42582240 42582483 -108201070 - AluSg/x SINE Alu 0 310 70 2654 155 56 23 chr11 42583358 42583874 -108199679 + L1MA7 LINE L1 5509 6041 -250 586 183 16 0 chr11 42583881 42584007 -108199546 + L1MA7 LINE L1 6159 6286 -5 1634 132 135 36 chr11 42584365 42584698 -108198855 + MLT2D LTR ERVL 1 366 -48 494 200 36 79 chr11 42584823 42584988 -108198565 + MLT1J1 LTR MaLR 44 201 -245 311 261 0 11 chr11 42585071 42585163 -108198390 + MLT1I LTR MaLR 318 408 -1 501 285 43 30 chr11 42585165 42585570 -108197983 - MLT1L LTR MaLR 0 615 137 302 226 95 36 chr11 42587277 42587361 -108196192 + L2 LINE L2 3148 3236 -36 470 320 34 23 chr11 42587426 42587601 -108195952 + MER5A DNA MER1_type 10 186 -3 1614 191 0 14 chr11 42590829 42591111 -108192442 + AluJb SINE Alu 3 280 -32 25 0 0 0 chr11 42591341 42591366 -108192187 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr11 42593774 42593799 -108189754 + AT_rich Low_complexity Low_complexity 1 25 0 191 328 15 0 chr11 42594435 42594502 -108189051 + MIR SINE MIR 121 188 -74 348 287 20 40 chr11 42594673 42594774 -108188779 + MER5A DNA MER1_type 81 179 -10 5190 191 16 11 chr11 42594810 42596798 -108186755 + L1PA16 LINE L1 4145 6143 -23 2225 119 42 14 chr11 42596969 42597323 -108186230 - THE1B LTR MaLR 0 364 1 321 242 69 43 chr11 42597341 42597488 -108186065 - MIR SINE MIR -63 145 4 513 310 84 17 chr11 42598147 42598398 -108185155 - MLT1J LTR MaLR -156 355 51 1949 219 48 42 chr11 42598930 42599432 -108184121 + MLT1D LTR MaLR 1 505 0 222 321 219 0 chr11 42599494 42599631 -108183922 - MIR SINE MIR -43 219 53 1950 149 14 0 chr11 42599702 42599990 -108183563 - AluSx SINE Alu -13 299 8 688 295 43 0 chr11 42600034 42600241 -108183312 - MER58A DNA MER1_type -2 222 7 563 311 87 49 chr11 42600379 42600745 -108182808 + L2 LINE L2 2930 3309 -4 191 322 98 46 chr11 42601999 42602173 -108181380 + L2 LINE L2 2573 2755 -559 867 203 34 123 chr11 42602654 42603063 -108180490 - Charlie4a DNA MER1_type -97 411 37 1388 141 173 12 chr11 42603272 42603527 -108180026 + AluSg SINE Alu 1 296 -4 2145 134 0 0 chr11 42603529 42603834 -108179719 + AluSx SINE Alu 1 305 -7 190 135 0 81 chr11 42603895 42603932 -108179621 - L3b LINE CR1 -128 1455 1422 225 143 0 0 chr11 42603952 42603987 -108179566 - MLT1J LTR MaLR -380 87 53 1071 233 32 18 chr11 42604142 42604460 -108179093 + MLT1C LTR MaLR 136 618 -8 202 154 26 0 chr11 42604526 42604565 -108178988 + T-rich Low_complexity Low_complexity 1 40 0 665 212 120 0 chr11 42604614 42604831 -108178722 + L1M4 LINE L1 828 1070 -5472 2729 89 14 3 chr11 42604862 42605233 -108178320 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr11 42605238 42605273 -108178280 + AT_rich Low_complexity Low_complexity 1 35 0 507 330 76 4 chr11 42605327 42605563 -108177990 + MIR SINE MIR 4 256 -6 422 307 220 8 chr11 42605901 42606142 -108177411 - MLT1I LTR MaLR -20 389 98 1702 181 98 17 chr11 42606220 42606579 -108176974 + MSTD LTR MaLR 1 388 -8 4392 250 17 57 chr11 42606586 42607377 -108176176 + MSTD-int LTR MaLR 1 640 -1011 4250 126 24 0 chr11 42607377 42608006 -108175547 + LTR9B LTR ERV1 1 644 0 4392 250 17 57 chr11 42608006 42608636 -108174917 + MSTD-int LTR MaLR 640 1294 -357 2514 235 96 2 chr11 42608788 42609349 -108174204 + MSTD-int LTR MaLR 1122 1735 0 1647 177 57 46 chr11 42609350 42609739 -108173814 + MSTD LTR MaLR 2 394 -2 646 201 72 127 chr11 42610084 42610528 -108173025 + L1MC4 LINE L1 7356 7942 -53 473 249 173 12 chr11 42612472 42612645 -108170908 + L1MD3 LINE L1 7742 7942 -53 343 361 137 26 chr11 42613045 42613788 -108169765 + L2 LINE L2 2059 2884 -430 1181 299 63 46 chr11 42613825 42614408 -108169145 + MLT1E LTR MaLR 1 593 0 371 336 122 18 chr11 42615477 42615706 -108167847 - MIR SINE MIR 0 262 10 271 398 56 15 chr11 42615712 42615908 -108167645 + MER115 DNA AcHobo 2 205 -488 868 233 67 33 chr11 42616049 42616289 -108167264 + MER115 DNA AcHobo 446 693 0 462 234 40 0 chr11 42617305 42617429 -108166124 - MER58 DNA MER1_type -3 2417 2289 207 162 0 0 chr11 42617603 42617640 -108165913 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 1938 100 3 48 chr11 42617920 42618209 -108165344 - AluY SINE Alu -35 276 1 247 234 31 0 chr11 42618297 42618361 -108165192 + (TTCA)n Simple_repeat Simple_repeat 3 68 0 340 331 87 21 chr11 42618912 42619154 -108164399 - MIR SINE MIR 0 262 5 520 330 11 34 chr11 42620445 42620621 -108162932 + MER5B DNA MER1_type 1 172 -6 2198 115 10 0 chr11 42621570 42621865 -108161688 - AluSc SINE Alu -11 298 1 915 206 64 50 chr11 42621986 42622035 -108161518 - MER58A DNA MER1_type -2197 223 176 2082 135 0 0 chr11 42622035 42622332 -108161221 - AluSx SINE Alu -15 297 1 915 206 64 50 chr11 42622332 42622501 -108161052 - MER58A DNA MER1_type -2244 176 2 465 19 0 0 chr11 42623145 42623199 -108160354 + (TG)n Simple_repeat Simple_repeat 1 54 0 24 32 0 0 chr11 42624111 42624142 -108159411 + AT_rich Low_complexity Low_complexity 1 31 0 2501 67 0 6 chr11 42624516 42624828 -108158725 - AluY SINE Alu -1 310 1 33 0 0 0 chr11 42625859 42625892 -108157661 + AT_rich Low_complexity Low_complexity 1 33 0 182 328 33 0 chr11 42626272 42626333 -108157220 + L2 LINE L2 3244 3306 -7 286 306 208 0 chr11 42626431 42626575 -108156978 + L2 LINE L2 2181 2354 -960 1405 157 54 74 chr11 42626588 42626938 -108156615 + MER61A LTR ERV1 1 343 0 2072 177 53 51 chr11 42626947 42627554 -108155999 + MER61A-int LTR ERV1 12 700 -4517 2270 110 3 3 chr11 42627629 42627939 -108155614 - AluSq SINE Alu -1 312 3 6621 115 63 22 chr11 42627939 42628851 -108154702 + MER61A-int LTR ERV1 1329 2202 -4794 2404 70 3 0 chr11 42628851 42629150 -108154403 + AluY SINE Alu 1 300 -11 6621 115 63 22 chr11 42629150 42629536 -108154017 + MER61A-int LTR ERV1 2202 4949 -2047 467 215 32 0 chr11 42629536 42629629 -108153924 - MLT1B LTR MaLR -33 357 262 2088 113 41 0 chr11 42629630 42629922 -108153631 + AluSg SINE Alu 1 304 -6 17111 90 26 7 chr11 42629967 42632373 -108151180 + MER61A-int LTR ERV1 2767 5217 0 1429 156 50 95 chr11 42632373 42632732 -108150821 + MER61A LTR ERV1 1 343 0 216 356 103 68 chr11 42633202 42633601 -108149952 + L2 LINE L2 2860 3272 0 217 295 103 0 chr11 42634943 42635021 -108148532 + MIR SINE MIR 119 204 -58 524 239 18 0 chr11 42635329 42635438 -108148115 + MER81 DNA DNA 4 114 0 341 265 0 12 chr11 42635459 42635542 -108148011 + L2 LINE L2 3228 3309 -4 21 95 0 0 chr11 42636520 42636583 -108146970 + AT_rich Low_complexity Low_complexity 1 63 0 30 45 0 0 chr11 42637361 42637405 -108146148 + AT_rich Low_complexity Low_complexity 1 44 0 240 86 0 0 chr11 42638717 42638752 -108144801 + (CA)n Simple_repeat Simple_repeat 2 36 0 203 330 60 20 chr11 42640466 42640566 -108142987 + L2 LINE L2 3210 3313 0 186 221 0 88 chr11 42644030 42644098 -108139455 - MIR SINE MIR 0 262 201 722 267 6 0 chr11 42644117 42644282 -108139271 - MER45A DNA AcHobo -7 171 6 313 388 50 0 chr11 42644295 42644455 -108139098 - MIR SINE MIR -76 186 19 874 184 0 47 chr11 42645067 42645257 -108138296 + MIR SINE MIR 82 262 0 51 89 0 0 chr11 42645272 42645407 -108138146 + AT_rich Low_complexity Low_complexity 1 135 0 230 180 50 50 chr11 42645409 42645570 -108137983 + (TATAA)n Simple_repeat Simple_repeat 3 163 0 255 237 0 0 chr11 42645570 42645629 -108137924 - MIR SINE MIR 0 262 204 206 351 138 0 chr11 42645644 42645738 -108137815 - L2 LINE L2 -41 3231 3125 379 355 30 56 chr11 42646613 42646844 -108136709 + L2 LINE L2 3048 3272 0 2451 188 36 39 chr11 42646899 42647459 -108136094 + MER74A LTR ERVL 1 558 0 390 298 107 40 chr11 42648053 42648278 -108135275 + MIR SINE MIR 13 252 -10 874 249 94 49 chr11 42649185 42649485 -108134068 + MER110A LTR ERV1 24 350 -118 1920 79 21 28 chr11 42649485 42649776 -108133777 - L1PA10 LINE L1 0 6168 5880 874 249 94 49 chr11 42649776 42649901 -108133652 + MER110A LTR ERV1 350 468 0 194 203 0 13 chr11 42650117 42650196 -108133357 + (TA)n Simple_repeat Simple_repeat 2 79 0 300 53 0 0 chr11 42650196 42650234 -108133319 + (CA)n Simple_repeat Simple_repeat 2 39 0 917 155 62 6 chr11 42650299 42650460 -108133093 - MER58B DNA MER1_type -1 340 171 4984 130 31 7 chr11 42650477 42651346 -108132207 + L1MA3 LINE L1 4124 5013 -1133 5345 104 40 7 chr11 42651355 42652195 -108131358 + L1MA3 LINE L1 5436 6303 -2 30 27 0 0 chr11 42652196 42652233 -108131320 + AT_rich Low_complexity Low_complexity 1 37 0 295 313 73 0 chr11 42652236 42652332 -108131221 - MER58B DNA MER1_type -236 105 3 1184 265 82 30 chr11 42652334 42652772 -108130781 + MLT1L LTR MaLR 148 608 -7 180 0 0 0 chr11 42652790 42652810 -108130743 + (TC)n Simple_repeat Simple_repeat 1 20 0 2186 121 7 0 chr11 42653993 42654299 -108129254 + AluSp SINE Alu 4 311 -2 2096 121 7 0 chr11 42654309 42654606 -108128947 + AluSc SINE Alu 1 299 -10 233 288 117 9 chr11 42655403 42655514 -108128039 + MIR SINE MIR 74 196 -66 736 338 94 19 chr11 42655586 42656418 -108127135 + L2 LINE L2 2430 3313 0 194 309 49 12 chr11 42656493 42656574 -108126979 + L2 LINE L2 3186 3269 -3 692 116 66 25 chr11 42657887 42658008 -108125545 - MER20 DNA MER1_type -93 126 1 323 209 47 0 chr11 42658978 42659064 -108124489 + MIR SINE MIR 172 261 -1 25 51 0 0 chr11 42659991 42660030 -108123523 + AT_rich Low_complexity Low_complexity 1 39 0 224 207 17 52 chr11 42660479 42660537 -108123016 + L2 LINE L2 1859 1914 -1400 248 293 113 0 chr11 42660761 42660867 -108122686 + MIR3 SINE MIR 85 202 -6 193 260 20 0 chr11 42661170 42661220 -108122333 - L2 LINE L2 -5 3308 3258 763 169 0 0 chr11 42661423 42661541 -108122012 + FLAM_A SINE Alu 2 119 -14 203 182 227 0 chr11 42663091 42663135 -108120418 + MIR SINE MIR 95 148 -114 903 245 15 10 chr11 42663339 42663543 -108120010 + MER58A DNA MER1_type 5 209 -15 2374 60 0 35 chr11 42663572 42663887 -108119666 - AluY SINE Alu -7 304 1 910 258 148 9 chr11 42663934 42664271 -108119282 + Charlie7 DNA MER1_type 43 426 -2186 268 205 26 51 chr11 42664326 42664404 -108119149 + Charlie7 DNA MER1_type 437 512 -2100 204 40 0 0 chr11 42664475 42664500 -108119053 + (TG)n Simple_repeat Simple_repeat 1 25 0 197 133 0 0 chr11 42665300 42665330 -108118223 - MIR SINE MIR -71 191 162 1286 176 5 18 chr11 42665467 42665688 -108117865 - AluJo SINE Alu -9 303 86 272 309 111 11 chr11 42665767 42665948 -108117605 - MIR SINE MIR -62 200 2 271 273 71 30 chr11 42667286 42667385 -108116168 - L2 LINE L2 -1 3271 3169 193 191 24 0 chr11 42667481 42667523 -108116030 - L2 LINE L2 -96 3217 3175 252 86 0 0 chr11 42668159 42668194 -108115359 + (A)n Simple_repeat Simple_repeat 1 35 0 218 326 30 8 chr11 42668405 42668495 -108115058 + MIR SINE MIR 73 163 -45 707 254 11 11 chr11 42668945 42669126 -108114427 - L2 LINE L2 -2617 697 517 2086 126 17 0 chr11 42669304 42669606 -108113947 + AluSx SINE Alu 1 307 -5 1899 246 87 103 chr11 42669792 42671171 -108112382 + L2 LINE L2 1910 3251 -62 279 232 18 0 chr11 42671178 42671234 -108112319 - MIR SINE MIR -62 146 90 493 261 50 31 chr11 42671368 42671529 -108112024 + MIR SINE MIR 84 247 -15 281 336 16 39 chr11 42671916 42672044 -108111509 - MIR SINE MIR -50 212 88 216 395 90 8 chr11 42672312 42672446 -108111107 + L2 LINE L2 3122 3266 -6 193 202 71 60 chr11 42673371 42673455 -108110098 + L2 LINE L2 337 421 -2893 513 338 80 62 chr11 42674818 42675039 -108108514 - L2 LINE L2 -6 3307 3091 6078 171 13 14 chr11 42675039 42676948 -108106605 - L1PA13 LINE L1 0 6163 4193 513 338 80 62 chr11 42676948 42677190 -108106363 - L2 LINE L2 -222 3091 2836 1211 255 123 12 chr11 42677199 42677630 -108105923 - MLT1D LTR MaLR -1 504 26 338 279 122 69 chr11 42677662 42677775 -108105778 - L2 LINE L2 -510 2804 2698 1341 175 78 30 chr11 42677775 42678044 -108105509 - AluJo SINE Alu -30 282 1 338 279 122 69 chr11 42678044 42678249 -108105304 - L2 LINE L2 -616 2698 2469 14426 193 42 19 chr11 42679252 42685716 -108097837 + L1PB1 LINE L1 6 6859 -8 337 319 36 36 chr11 42687087 42687253 -108096300 + L2 LINE L2 3148 3313 0 2010 114 3 20 chr11 42688773 42689079 -108094474 + AluSx SINE Alu 1 301 -11 819 179 7 0 chr11 42689203 42689343 -108094210 - MLT1A1 LTR MaLR -1 364 224 302 307 51 51 chr11 42689987 42690124 -108093429 - MIR SINE MIR -84 178 42 204 219 0 0 chr11 42690836 42690877 -108092676 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 309 344 6 6 chr11 42741913 42742076 -108041477 - MER103 DNA DNA -2 164 2 1569 126 8 12 chr11 42742415 42742670 -108040883 + L1PA13 LINE L1 5907 6160 -3 254 384 46 20 chr11 42742884 42743035 -108040518 + L2 LINE L2 2587 2741 -573 2534 61 0 3 chr11 42743169 42743481 -108040072 - AluY SINE Alu 0 311 1 539 267 47 41 chr11 42743481 42743560 -108039993 + L2 LINE L2 3108 3185 -128 832 295 67 39 chr11 42743560 42743991 -108039562 - MLT1J1 LTR MaLR -3 443 1 539 267 47 41 chr11 42743991 42744083 -108039470 + L2 LINE L2 3185 3280 -33 667 278 61 0 chr11 42744142 42744340 -108039213 - MIR SINE MIR -21 241 32 195 186 0 0 chr11 42745485 42745528 -108038025 + (TATG)n Simple_repeat Simple_repeat 2 44 0 221 200 0 50 chr11 42746226 42746286 -108037267 + CT-rich Low_complexity Low_complexity 1 57 0 186 276 81 35 chr11 42746903 42746990 -108036563 - L2 LINE L2 -84 3229 3139 22 0 0 0 chr11 42747255 42747277 -108036276 + AT_rich Low_complexity Low_complexity 1 22 0 1402 244 60 22 chr11 42747326 42747776 -108035777 + MLT1C LTR MaLR 1 467 0 2151 183 14 33 chr11 42747897 42748323 -108035230 - MLT2B2 LTR ERVL 0 515 98 2817 116 0 57 chr11 42748323 42748797 -108034756 - L1MA5 LINE L1 -406 5894 5448 2314 123 48 18 chr11 42748797 42749032 -108034521 + L1MA5 LINE L1 5888 6144 -156 2411 108 39 3 chr11 42749032 42749394 -108034159 + THE1C LTR MaLR 1 375 0 2314 123 48 18 chr11 42749394 42749554 -108033999 + L1MA5 LINE L1 6144 6298 -2 737 125 9 0 chr11 42749584 42749696 -108033857 - MLT2B2 LTR ERVL -407 113 1 2313 107 0 0 chr11 42749839 42750148 -108033405 + AluY SINE Alu 1 309 -2 652 316 43 37 chr11 42750164 42750487 -108033066 - L3 LINE CR1 -92 1485 1161 25 0 0 0 chr11 42751792 42751817 -108031736 + AT_rich Low_complexity Low_complexity 1 25 0 224 254 119 0 chr11 42752195 42752254 -108031299 + L2 LINE L2 3204 3269 -3 180 158 0 0 chr11 42752255 42752293 -108031260 + (ACTG)n Simple_repeat Simple_repeat 2 39 0 314 54 0 0 chr11 42752373 42752410 -108031143 + U2 snRNA snRNA 1 37 -151 689 364 62 9 chr11 42752823 42753257 -108030296 + L2 LINE L2 2462 2918 -396 2170 99 44 0 chr11 42753310 42753603 -108029950 - AluSg1 SINE Alu -3 306 1 279 0 0 0 chr11 42753923 42753954 -108029599 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1526 194 4 18 chr11 42754308 42754587 -108028966 + AluJo SINE Alu 21 295 -17 1170 221 90 15 chr11 42755068 42755458 -108028095 - LTR37A LTR ERV1 0 426 8 483 215 128 51 chr11 42755558 42755753 -108027800 + MER46C DNA MER2_type 99 308 -30 781 212 50 45 chr11 42755767 42755920 -108027633 - MER63A DNA MER1_type -1488 200 44 288 0 0 0 chr11 42755920 42755952 -108027601 + (TG)n Simple_repeat Simple_repeat 2 33 0 781 212 50 45 chr11 42755952 42755996 -108027557 - MER63A DNA MER1_type -1644 44 2 1028 111 0 0 chr11 42756527 42756662 -108026891 - AluSg/x SINE Alu -25 287 153 230 276 122 58 chr11 42756666 42756822 -108026731 - L2 LINE L2 -15 3298 3133 195 299 75 0 chr11 42756877 42756944 -108026609 - L2 LINE L2 -258 3014 2943 768 63 118 16 chr11 42757128 42757255 -108026298 + AluY SINE Alu 171 310 -1 255 333 23 16 chr11 42757305 42757434 -108026119 + L2 LINE L2 3179 3308 -5 289 209 68 107 chr11 42757545 42757722 -108025831 + L2 LINE L2 2805 2974 -340 2030 133 0 13 chr11 42757747 42758048 -108025505 - AluSx SINE Alu -15 297 1 317 325 96 6 chr11 42758120 42758286 -108025267 + L2 LINE L2 3131 3311 -2 893 263 32 88 chr11 42758608 42759018 -108024535 + MLT1J LTR MaLR 92 478 -33 658 318 56 0 chr11 42759593 42759807 -108023746 - MIR SINE MIR -21 241 16 401 280 83 42 chr11 42760811 42761004 -108022549 - MIR SINE MIR -13 249 49 1289 184 78 45 chr11 42761078 42761481 -108022072 + LTR47A LTR ERVL 1 452 0 1122 250 79 21 chr11 42761481 42761809 -108021744 + MLT1A2 LTR MaLR 24 370 -4 1511 201 20 3 chr11 42762509 42762807 -108020746 - AluJo SINE Alu -9 303 1 274 308 14 68 chr11 42762933 42763079 -108020474 + L2 LINE L2 2926 3063 -250 237 196 20 0 chr11 42763090 42763141 -108020412 + (TAA)n Simple_repeat Simple_repeat 1 52 0 612 284 119 0 chr11 42763142 42763343 -108020210 - MIR SINE MIR -18 244 20 314 349 8 23 chr11 42763499 42763628 -108019925 + L2 LINE L2 3185 3311 -2 204 128 0 26 chr11 42764060 42764099 -108019454 + (CA)n Simple_repeat Simple_repeat 2 39 0 247 304 167 39 chr11 42764266 42764470 -108019083 + L2 LINE L2 3080 3309 -4 386 336 74 9 chr11 42765334 42765551 -108018002 - MIR SINE MIR -24 238 8 2111 133 0 0 chr11 42765612 42765906 -108017647 + AluSx SINE Alu 1 294 -18 303 329 68 55 chr11 42766523 42766742 -108016811 + MIR SINE MIR 1 222 -40 417 348 31 25 chr11 42767386 42767587 -108015966 - MIR3 SINE MIR -10 198 5 2333 67 0 3 chr11 42767618 42767934 -108015619 - AluY SINE Alu 0 315 1 280 152 30 0 chr11 42768181 42768247 -108015306 + (TA)n Simple_repeat Simple_repeat 2 69 0 180 0 0 0 chr11 42769867 42769887 -108013666 + (TAA)n Simple_repeat Simple_repeat 2 21 0 243 320 13 0 chr11 42772289 42772367 -108011186 + L1MC/D LINE L1 5485 5563 -558 288 303 104 62 chr11 42773546 42773787 -108009766 - MIR SINE MIR 0 262 12 2301 32 0 7 chr11 42774167 42774449 -108009104 - L1PA4 LINE L1 -259 5896 5617 1851 51 51 0 chr11 42774449 42774682 -108008871 + L1PA4 LINE L1 5901 6149 -6 2104 125 3 3 chr11 42775179 42775483 -108008070 + AluSc SINE Alu 4 307 -2 255 189 0 0 chr11 42775838 42775891 -108007662 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 28 0 0 0 chr11 42775998 42776026 -108007527 + AT_rich Low_complexity Low_complexity 1 28 0 233 317 0 0 chr11 42776026 42776086 -108007467 + L2 LINE L2 3213 3272 0 315 259 75 52 chr11 42776151 42776325 -108007228 + L1MC/D LINE L1 5638 5815 -1993 1216 204 12 0 chr11 42776358 42776598 -108006955 - L1PA15 LINE L1 -20 6145 5903 10321 192 1 0 chr11 42776648 42779697 -108003856 + L1PA13 LINE L1 3161 6152 -11 5982 122 70 149 chr11 42779708 42780593 -108002960 - Tigger1 DNA MER2_type -1030 1388 668 2137 109 3 3 chr11 42780593 42780896 -108002657 - AluSp SINE Alu -10 303 1 5982 122 70 149 chr11 42780896 42781516 -108002037 - Tigger1 DNA MER2_type -1750 668 1 201 349 61 23 chr11 42781543 42781675 -108001878 - MIR SINE MIR -105 157 21 21 0 0 0 chr11 42781932 42781953 -108001600 + AT_rich Low_complexity Low_complexity 1 21 0 6562 146 17 22 chr11 42782125 42784365 -107999188 - L1MA3 LINE L1 0 7724 5480 * 19782 172 46 16 chr11 42784343 42784755 -107998798 - L1MA3 LINE L1 -3250 4315 3917 643 131 37 0 chr11 42784755 42784862 -107998691 + HY1 scRNA scRNA 1 111 -1 19782 172 46 16 chr11 42784862 42785275 -107998278 - L1MA3 LINE L1 -3648 3917 3518 787 44 0 26 chr11 42785275 42785389 -107998164 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 19782 172 46 16 chr11 42785389 42785654 -107997899 - L1MA3 LINE L1 -4047 3518 3262 575 0 0 0 chr11 42785654 42785723 -107997830 - L1PA3 LINE L1 -3 6152 6084 19782 172 46 16 chr11 42785723 42786627 -107996926 - L1MA3 LINE L1 -4303 3262 2387 1713 183 14 0 chr11 42786627 42786912 -107996641 + AluSx SINE Alu 1 289 -23 19782 172 46 16 chr11 42786912 42789100 -107994453 - L1MA3 LINE L1 -5178 2387 16 504 32 0 0 chr11 42789127 42789189 -107994364 + (TATAG)n Simple_repeat Simple_repeat 3 64 0 388 301 72 26 chr11 42789191 42789344 -107994209 + MIR SINE MIR 16 175 -87 447 229 25 25 chr11 42789351 42789495 -107994058 + MER63 DNA MER1_type 689 1057 -4 226 277 36 24 chr11 42789500 42789583 -107993970 + MIR SINE MIR 173 256 -6 359 241 193 21 chr11 42789592 42789737 -107993816 - MIR SINE MIR -58 204 35 435 315 51 17 chr11 42790000 42790178 -107993375 - MIR SINE MIR 0 262 79 180 0 0 0 chr11 42790863 42790883 -107992670 + (TC)n Simple_repeat Simple_repeat 1 20 0 2131 128 0 3 chr11 42791094 42791399 -107992154 + AluSc SINE Alu 1 304 -5 613 151 0 67 chr11 42791475 42791594 -107991959 - AluJb SINE Alu -23 289 179 180 355 122 0 chr11 42792317 42792424 -107991129 + L2 LINE L2 2638 2757 -557 941 327 111 6 chr11 42792822 42793318 -107990235 + L1MEc LINE L1 93 640 -5756 8979 162 25 19 chr11 42793435 42795187 -107988366 + L1PA13 LINE L1 3581 5320 -843 1843 150 7 0 chr11 42795187 42795460 -107988093 + AluSx SINE Alu 6 280 -32 195 100 0 0 chr11 42795460 42795490 -107988063 + (CAAT)n Simple_repeat Simple_repeat 4 33 0 8979 162 25 19 chr11 42795490 42796325 -107987228 + L1PA13 LINE L1 5319 6163 0 1319 285 76 52 chr11 42796765 42797909 -107985644 + L1MEc LINE L1 650 1820 -4576 21 36 0 0 chr11 42797974 42798002 -107985551 + AT_rich Low_complexity Low_complexity 1 28 0 352 304 52 0 chr11 42798083 42798198 -107985355 + MIR3 SINE MIR 36 156 -52 273 378 37 24 chr11 42798750 42798914 -107984639 + MIR3 SINE MIR 39 204 -4 229 280 118 11 chr11 42799536 42799629 -107983924 + MIR3 SINE MIR 58 160 -48 342 302 0 10 chr11 42799866 42799962 -107983591 + L2 LINE L2 3178 3272 0 310 338 125 34 chr11 42800404 42800700 -107982853 + L2 LINE L2 2974 3296 -17 417 266 52 13 chr11 42801535 42801689 -107981864 + MIR SINE MIR 28 187 -75 181 295 167 0 chr11 42801816 42801894 -107981659 - L2 LINE L2 -3 3269 3179 2078 101 28 3 chr11 42802094 42802382 -107981171 - AluSp SINE Alu -18 295 1 742 156 32 19 chr11 42802412 42802566 -107980987 - L1MA8 LINE L1 -4 6287 6132 27 0 0 0 chr11 42803590 42803617 -107979936 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr11 42803836 42803857 -107979696 + AT_rich Low_complexity Low_complexity 1 21 0 889 235 5 31 chr11 42805160 42805356 -107978197 - MLT1E2 LTR MaLR -418 208 18 422 302 52 38 chr11 42805818 42806300 -107977253 + L1M4 LINE L1 4892 5388 -796 2058 198 14 12 chr11 42806300 42806724 -107976829 + MSTB LTR MaLR 1 425 -1 422 302 52 38 chr11 42806724 42806913 -107976640 + L1M4 LINE L1 5388 5573 -611 347 345 0 18 chr11 42807051 42807161 -107976392 - L2 LINE L2 0 3272 3165 317 312 11 11 chr11 42807604 42807697 -107975856 - MIR3 SINE MIR -38 170 78 416 330 53 9 chr11 42808541 42808768 -107974785 + MIR SINE MIR 1 237 -25 324 102 0 0 chr11 42809455 42809504 -107974049 + (TG)n Simple_repeat Simple_repeat 2 50 0 456 19 0 0 chr11 42810846 42810899 -107972654 + (CA)n Simple_repeat Simple_repeat 2 54 0 186 337 126 11 chr11 42811131 42811226 -107972327 - MIR3 SINE MIR -25 183 78 474 49 0 0 chr11 42813106 42813167 -107970386 + (TG)n Simple_repeat Simple_repeat 1 61 0 22 0 0 0 chr11 42813991 42814013 -107969540 + AT_rich Low_complexity Low_complexity 1 22 0 464 291 141 9 chr11 42814044 42814271 -107969282 + MIR SINE MIR 2 258 -4 352 216 30 90 chr11 42815488 42815622 -107967931 + MLT1K LTR MaLR 408 533 -55 494 304 118 10 chr11 42815985 42816189 -107967364 - MIR SINE MIR -18 244 19 205 243 0 0 chr11 42816239 42816276 -107967277 + L2 LINE L2 3218 3254 -18 235 317 0 49 chr11 42817396 42817519 -107966034 + GA-rich Low_complexity Low_complexity 6 122 0 1953 94 16 8 chr11 42818530 42818806 -107964747 + AluSx SINE Alu 34 312 0 2020 125 7 0 chr11 42820152 42820433 -107963120 - AluSp SINE Alu -30 283 1 428 174 12 23 chr11 42821376 42821462 -107962091 + Tigger7 DNA MER2_type 2503 2587 0 336 279 0 0 chr11 42821477 42821563 -107961990 - MIR SINE MIR 0 262 177 380 326 228 10 chr11 42822285 42822478 -107961075 + MIR SINE MIR 28 262 0 1227 174 185 7 chr11 42822493 42822780 -107960773 - MER44D DNA MER2_type 0 609 2 233 365 138 6 chr11 42823095 42823276 -107960277 - MIR SINE MIR -21 241 37 23 0 0 0 chr11 42823423 42823446 -107960107 + AT_rich Low_complexity Low_complexity 1 23 0 250 351 107 0 chr11 42823483 42823614 -107959939 - MIR3 SINE MIR -7 201 57 348 24 0 0 chr11 42823685 42823726 -107959827 + (TG)n Simple_repeat Simple_repeat 2 42 0 306 254 0 14 chr11 42823882 42823953 -107959600 - L2 LINE L2 -5 3308 3239 374 262 199 31 chr11 42824462 42824653 -107958900 - MIR SINE MIR -12 250 28 226 291 38 25 chr11 42825780 42825859 -107957694 - MIR SINE MIR -108 154 75 233 211 19 19 chr11 42827190 42827242 -107956311 + GA-rich Low_complexity Low_complexity 3 54 0 250 244 163 0 chr11 42827479 42827565 -107955988 + MIR3 SINE MIR 109 208 0 240 35 0 0 chr11 42829628 42829657 -107953896 + (CGGGGG)n Simple_repeat Simple_repeat 2 30 0 267 215 0 0 chr11 42830033 42830098 -107953455 + A-rich Low_complexity Low_complexity 1 65 0 201 178 0 44 chr11 42830355 42830400 -107953153 + CT-rich Low_complexity Low_complexity 1 43 0 2291 86 0 16 chr11 42830977 42831292 -107952261 + AluSg SINE Alu 1 310 0 257 299 246 27 chr11 42832734 42832921 -107950632 - MIR SINE MIR -6 256 30 562 282 168 5 chr11 42834128 42834337 -107949216 - MIR SINE MIR -2 260 18 511 284 159 39 chr11 42834661 42835077 -107948476 - MLT1H LTR MaLR 0 549 64 1978 153 30 24 chr11 42835077 42835450 -107948103 - THE1C LTR MaLR 0 375 1 511 284 159 39 chr11 42835450 42835522 -107948031 - MLT1H LTR MaLR -485 64 2 201 293 35 0 chr11 42836111 42836169 -107947384 + L2 LINE L2 3254 3313 0 2030 168 75 0 chr11 42836348 42836746 -107946807 - MSTA LTR MaLR 0 428 1 781 277 58 30 chr11 42836974 42837236 -107946317 + MER2 DNA MER2_type 1 275 -70 756 218 26 13 chr11 42837236 42837392 -107946161 - FRAM SINE Alu -8 158 1 781 277 58 30 chr11 42837392 42837458 -107946095 + MER2 DNA MER2_type 275 338 -7 211 200 0 0 chr11 42839719 42839759 -107943794 + (TG)n Simple_repeat Simple_repeat 1 40 0 369 269 29 0 chr11 42839794 42839898 -107943655 + L3 LINE CR1 1363 1469 -108 22 94 0 0 chr11 42840061 42840125 -107943428 + AT_rich Low_complexity Low_complexity 1 64 0 353 298 221 34 chr11 42841058 42841167 -107942386 + L2 LINE L2 2743 2830 -483 1784 104 22 108 chr11 42841167 42841483 -107942070 - AluYb8 SINE Alu -16 302 14 353 298 221 34 chr11 42841483 42841864 -107941689 + L2 LINE L2 2830 3309 -4 557 320 90 8 chr11 42842092 42842326 -107941227 + MIR SINE MIR 6 258 -4 238 232 58 29 chr11 42842721 42842790 -107940763 + MIR SINE MIR 83 153 -109 301 206 32 0 chr11 42843091 42843154 -107940399 - MIR SINE MIR -12 250 186 312 259 27 54 chr11 42843257 42843369 -107940184 + MIR SINE MIR 67 175 -87 275 65 22 0 chr11 42843418 42843464 -107940089 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 484 147 14 140 chr11 42843487 42843630 -107939923 - MER20 DNA MER1_type -45 174 50 305 291 48 32 chr11 42843982 42844171 -107939382 + L2 LINE L2 3114 3305 -8 940 179 17 0 chr11 42844840 42845013 -107938540 + MLT1D LTR MaLR 21 196 -309 413 318 80 42 chr11 42845089 42845328 -107938225 + MLT1K LTR MaLR 269 516 -72 843 185 0 23 chr11 42845345 42845518 -107938035 - MLT-int LTR MaLR -1461 274 106 * 897 206 21 60 chr11 42845513 42845878 -107937675 - L1MB7 LINE L1 -80 6103 5769 1682 178 21 3 chr11 42845947 42846234 -107937319 - AluJb SINE Alu -16 296 5 215 288 93 51 chr11 42846806 42846924 -107936629 + L2 LINE L2 3145 3267 -5 281 221 29 15 chr11 42847026 42847094 -107936459 - MIR SINE MIR -5 257 189 188 343 60 0 chr11 42847793 42847860 -107935693 + L2 LINE L2 3202 3272 0 2375 100 0 0 chr11 42848096 42848396 -107935157 + AluSc SINE Alu 1 300 -9 244 342 50 25 chr11 42848724 42848844 -107934709 + MIR SINE MIR 36 158 -104 1950 193 25 50 chr11 42849738 42850031 -107933522 + L1MA5A LINE L1 4769 5043 -1103 2309 77 10 29 chr11 42850031 42850344 -107933209 - AluY SINE Alu -4 307 1 1950 193 25 50 chr11 42850344 42850605 -107932948 + L1MA5A LINE L1 5043 5309 -837 * 5177 150 26 10 chr11 42850598 42851614 -107931939 + L1MA5A LINE L1 5263 6295 -2 275 316 101 43 chr11 42852061 42852200 -107931353 - MIR SINE MIR -108 154 8 596 278 19 42 chr11 42853986 42854198 -107929355 - MIR SINE MIR -2 260 54 189 352 99 28 chr11 42854254 42854436 -107929117 + MIR SINE MIR 20 214 -48 543 53 0 0 chr11 42855405 42855480 -107928073 + (TATG)n Simple_repeat Simple_repeat 2 76 0 570 67 0 0 chr11 42855519 42855594 -107927959 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 1143 281 36 64 chr11 42855636 42855935 -107927618 + L2 LINE L2 2827 3108 -205 965 219 0 28 chr11 42855935 42856150 -107927403 - MER3 DNA MER1_type 0 209 1 1143 281 36 64 chr11 42856150 42856351 -107927202 + L2 LINE L2 3108 3313 0 1281 246 30 41 chr11 42856379 42856847 -107926706 + L1MA9 LINE L1 5810 6272 -40 304 263 19 88 chr11 42857516 42857676 -107925877 - L1ME4a LINE L1 -8 6113 5965 2022 117 0 7 chr11 42857689 42857971 -107925582 - AluSx SINE Alu -1 311 32 1882 175 68 32 chr11 42858398 42858839 -107924714 + LTR2B LTR ERV1 34 490 0 214 354 217 0 chr11 42858893 42859068 -107924485 - MIR SINE MIR -36 226 14 291 353 20 50 chr11 42861333 42861534 -107922019 + MIR SINE MIR 20 214 -48 21 0 0 0 chr11 42862135 42862156 -107921397 + AT_rich Low_complexity Low_complexity 1 21 0 2395 92 0 6 chr11 42862431 42862745 -107920808 - AluSx SINE Alu 0 312 1 531 307 27 36 chr11 42862825 42863050 -107920503 - MIR SINE MIR -30 232 10 199 325 70 53 chr11 42863303 42863417 -107920136 - L3b LINE CR1 -243 1340 1225 301 296 78 42 chr11 42863469 42863611 -107919942 + MIR3 SINE MIR 26 172 -36 22 0 0 0 chr11 42864652 42864674 -107918879 + AT_rich Low_complexity Low_complexity 1 22 0 203 297 209 34 chr11 42864750 42864898 -107918655 - MIR SINE MIR -60 202 29 2208 121 0 0 chr11 42866110 42866399 -107917154 - AluSx SINE Alu -23 289 1 262 368 33 53 chr11 42867276 42867613 -107915940 - L2 LINE L2 -800 2514 2185 180 403 56 0 chr11 42867767 42867839 -107915714 + L2 LINE L2 3104 3179 -93 634 221 0 22 chr11 42867912 42868048 -107915505 + FLAM_A SINE Alu 1 133 0 228 231 26 13 chr11 42868217 42868295 -107915258 + (TA)n Simple_repeat Simple_repeat 1 79 0 341 208 160 0 chr11 42868348 42868454 -107915099 - MIR SINE MIR -10 252 130 503 81 0 0 chr11 42868686 42868760 -107914793 - L1PA11 LINE L1 -1 6173 6100 2156 116 3 0 chr11 42868840 42869132 -107914421 - AluSx SINE Alu -19 293 1 373 394 110 13 chr11 42869644 42870062 -107913491 + L2 LINE L2 2594 3053 -260 686 319 28 8 chr11 42870709 42870960 -107912593 - MIR SINE MIR 0 262 7 479 321 132 0 chr11 42871046 42871236 -107912317 - MIR SINE MIR -34 228 14 471 261 50 83 chr11 42871278 42871326 -107912227 - MER20 DNA MER1_type -8 211 163 1658 189 0 7 chr11 42871326 42871612 -107911941 + AluJb SINE Alu 14 297 -15 471 261 50 83 chr11 42871612 42871781 -107911772 - MER20 DNA MER1_type -56 163 1 264 318 45 18 chr11 42872039 42872149 -107911404 + MIR SINE MIR 149 261 -1 208 143 0 0 chr11 42872697 42872732 -107910821 + (TTTTTA)n Simple_repeat Simple_repeat 5 39 0 308 287 83 87 chr11 42873289 42873703 -107909850 + MLT1I LTR MaLR 31 402 -7 257 371 91 17 chr11 42874180 42874412 -107909141 + MIR SINE MIR 8 256 -6 370 165 35 12 chr11 42876749 42876834 -107906719 + MER5A DNA MER1_type 27 113 -76 24 0 0 0 chr11 42877619 42877643 -107905910 + AT_rich Low_complexity Low_complexity 1 24 0 1267 188 4 55 chr11 42877937 42878209 -107905344 + AluJo SINE Alu 26 283 -29 213 39 0 0 chr11 42878212 42878238 -107905315 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 205 317 38 98 chr11 42878244 42878427 -107905126 - MIR3 SINE MIR -14 194 23 * 399 216 60 17 chr11 42878362 42878478 -107905075 + MIR3 SINE MIR 67 187 -21 307 252 31 119 chr11 42880129 42880355 -107903198 - MIR3 SINE MIR -8 254 49 193 241 52 35 chr11 42880354 42880412 -107903141 - L2 LINE L2 0 3313 3255 * 30 27 0 0 chr11 42880445 42880482 -107903071 + AT_rich Low_complexity Low_complexity 1 37 0 1932 138 3 35 chr11 42880514 42880826 -107902727 - AluSx SINE Alu -10 302 1 1141 213 165 51 chr11 42881023 42881576 -107901977 + LTR48B LTR ERV1 1 784 -3 331 333 88 6 chr11 42882499 42882658 -107900895 + MIR SINE MIR 77 248 -14 25 31 0 0 chr11 42882665 42882697 -107900856 + AT_rich Low_complexity Low_complexity 1 32 0 2304 106 0 3 chr11 42882799 42883100 -107900453 - AluSq SINE Alu -13 300 1 21 36 0 0 chr11 42883940 42883968 -107899585 + AT_rich Low_complexity Low_complexity 1 28 0 322 294 91 7 chr11 42884306 42884449 -107899104 - MIR SINE MIR -87 175 21 195 362 40 53 chr11 42884931 42885083 -107898470 + L2 LINE L2 2946 3095 -177 544 225 50 0 chr11 42885154 42885274 -107898279 - MER20 DNA MER1_type -3 216 91 1269 199 115 0 chr11 42885280 42885541 -107898012 + AluJo SINE Alu 6 296 -16 251 216 193 68 chr11 42885542 42885568 -107897985 - MER20 DNA MER1_type -120 99 78 619 129 24 8 chr11 42885568 42885692 -107897861 + L1MA4 LINE L1 6170 6295 -5 251 216 193 68 chr11 42885692 42885753 -107897800 - MER20 DNA MER1_type -141 78 1 2184 103 7 3 chr11 42885882 42886182 -107897371 + AluSq SINE Alu 1 301 -12 183 186 14 29 chr11 42886382 42886452 -107897101 + (TA)n Simple_repeat Simple_repeat 2 70 0 3322 123 15 56 chr11 42886744 42887284 -107896269 + LTR24B LTR ERV1 1 516 -60 2054 130 3 0 chr11 42887284 42887569 -107895984 + AluSx SINE Alu 1 286 -26 3322 123 15 56 chr11 42887569 42887621 -107895932 + LTR24B LTR ERV1 516 569 -7 391 288 34 0 chr11 42888999 42889145 -107894408 + (CA)n Simple_repeat Simple_repeat 2 152 0 183 205 0 0 chr11 42889151 42889190 -107894363 + (CATA)n Simple_repeat Simple_repeat 4 42 0 445 288 50 6 chr11 42890235 42890395 -107893158 + MIR SINE MIR 40 206 -56 496 276 41 18 chr11 42890528 42890698 -107892855 + MIR SINE MIR 40 213 -49 746 311 51 36 chr11 42891478 42891627 -107891926 - L2 LINE L2 0 3313 3168 1544 186 43 17 chr11 42891627 42891928 -107891625 - AluJo SINE Alu -3 309 1 746 311 51 36 chr11 42891928 42892190 -107891363 - L2 LINE L2 -145 3168 2896 227 270 34 45 chr11 42892447 42892536 -107891017 + MIR SINE MIR 80 167 -95 263 343 66 0 chr11 42893118 42893255 -107890298 + MIR SINE MIR 85 230 -32 216 200 0 0 chr11 42893381 42893431 -107890122 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 485 296 87 27 chr11 42894326 42894738 -107888815 + MLT1L LTR MaLR 83 545 -70 567 283 44 17 chr11 42895812 42895992 -107887561 - MIR SINE MIR -60 202 18 5311 24 0 0 chr11 42896005 42896644 -107886909 - L1PA3 LINE L1 -760 5386 4748 6454 20 0 5 chr11 42896644 42897398 -107886155 + L1PA3 LINE L1 5404 6155 0 1569 182 10 32 chr11 42897707 42898015 -107885538 - AluJo SINE Alu -11 301 1 6767 67 3 4 chr11 42898544 42899822 -107883731 + L1PA7 LINE L1 4869 6154 0 203 261 216 45 chr11 42900019 42900195 -107883358 + MIR SINE MIR 3 208 -54 695 200 0 0 chr11 42900366 42900481 -107883072 - FLAM_A SINE Alu -18 115 1 302 222 16 0 chr11 42900919 42900982 -107882571 + MIR SINE MIR 197 260 -2 221 210 0 81 chr11 42900988 42901050 -107882503 - MIR SINE MIR -186 76 20 1752 166 6 16 chr11 42902844 42903158 -107880395 + AluJb SINE Alu 2 312 0 267 224 20 0 chr11 42903169 42903218 -107880335 + AluJ/monomer SINE Alu 4 53 -250 610 164 0 0 chr11 42903219 42903323 -107880230 + AluJb SINE Alu 208 311 -1 326 359 58 6 chr11 42903526 42903682 -107879871 - MIR SINE MIR -77 185 22 249 57 0 0 chr11 42903765 42903800 -107879753 + (CCCA)n Simple_repeat Simple_repeat 3 37 0 2393 72 0 0 chr11 42904185 42904478 -107879075 - AluY SINE Alu -18 293 1 295 289 77 45 chr11 42905563 42905719 -107877834 + MER5B DNA MER1_type 16 176 -2 301 266 147 0 chr11 42906122 42906231 -107877322 - MIR SINE MIR 0 262 138 1922 191 13 18 chr11 42907015 42907407 -107876146 - MLT1B LTR MaLR 0 390 1 36 0 0 0 chr11 42911557 42911593 -107871960 + AT_rich Low_complexity Low_complexity 1 36 0 865 227 11 5 chr11 42912093 42912278 -107871275 + MER5A DNA MER1_type 3 188 -1 251 333 60 17 chr11 42912422 42912539 -107871014 - L2 LINE L2 -212 3060 2939 263 207 81 72 chr11 42912832 42912943 -107870610 + MIR SINE MIR 96 207 -55 2193 67 6 80 chr11 42914246 42914573 -107868980 - AluY SINE Alu -8 303 1 37 23 0 0 chr11 42914583 42914627 -107868926 + AT_rich Low_complexity Low_complexity 1 44 0 4728 174 21 41 chr11 42914640 42914976 -107868577 - L1MA10 LINE L1 0 6334 5993 2550 55 0 0 chr11 42914976 42915284 -107868269 - AluY SINE Alu -3 308 1 4728 174 21 41 chr11 42915284 42915978 -107867575 - L1MA10 LINE L1 -341 5993 5324 1191 185 24 0 chr11 42915979 42916190 -107867363 - AluJo SINE Alu -10 302 87 297 0 0 0 chr11 42916212 42916245 -107867308 + (TTA)n Simple_repeat Simple_repeat 2 34 0 976 218 0 0 chr11 42916245 42916461 -107867092 - L1MA10 LINE L1 -849 5297 5082 453 301 144 22 chr11 42916643 42916872 -107866681 - MIR SINE MIR 0 262 6 1435 134 7 75 chr11 42917719 42917876 -107865677 + L1PA16 LINE L1 5887 6016 -150 2084 106 0 35 chr11 42917876 42918217 -107865336 + AluSc SINE Alu 1 309 0 1435 134 7 75 chr11 42918217 42918351 -107865202 + L1PA16 LINE L1 6016 6158 -8 26 50 0 0 chr11 42918363 42918403 -107865150 + AT_rich Low_complexity Low_complexity 1 40 0 259 365 38 31 chr11 42918625 42918784 -107864769 + MIR SINE MIR 36 195 -67 231 304 108 0 chr11 42921802 42921904 -107861649 - MIR SINE MIR -106 156 44 340 353 38 38 chr11 42922809 42923047 -107860506 - MIR SINE MIR 0 262 25 1889 132 7 0 chr11 42923167 42923454 -107860099 - AluSg SINE Alu 0 310 22 463 359 48 19 chr11 42923715 42923921 -107859632 - MIR SINE MIR -38 224 13 3568 149 17 43 chr11 42924091 42924811 -107858742 + L1MC2 LINE L1 5643 6343 -1 22 35 0 0 chr11 42924811 42924840 -107858713 + AT_rich Low_complexity Low_complexity 1 29 0 188 258 161 0 chr11 42925054 42925116 -107858437 - L2 LINE L2 -12 3301 3230 205 267 0 0 chr11 42927958 42928003 -107855550 - MER5A DNA MER1_type -22 167 123 1874 162 3 0 chr11 42928004 42928288 -107855265 + AluSx SINE Alu 4 288 -24 217 354 12 0 chr11 42928291 42928373 -107855180 - MER5B DNA MER1_type -42 136 54 24 0 0 0 chr11 42930100 42930124 -107853429 + AT_rich Low_complexity Low_complexity 1 24 0 548 309 129 11 chr11 42930124 42930558 -107852995 + L1ME4a LINE L1 5485 5969 -152 277 353 98 0 chr11 42930594 42930767 -107852786 + L2 LINE L2 3113 3302 -11 271 284 85 50 chr11 42931158 42931359 -107852194 - L1ME LINE L1 -297 5824 5617 4693 27 0 0 chr11 42931442 42931991 -107851562 + L1PA3 LINE L1 5606 6154 -1 274 403 12 21 chr11 42932110 42932353 -107851200 + L3 LINE CR1 1168 1408 -169 560 403 28 41 chr11 42932877 42933336 -107850217 + L2 LINE L2 2817 3269 -3 22 0 0 0 chr11 42933454 42933476 -107850077 + AT_rich Low_complexity Low_complexity 1 22 0 252 86 0 0 chr11 42933525 42933560 -107849993 + (TC)n Simple_repeat Simple_repeat 2 36 0 181 233 250 26 chr11 42935067 42935183 -107848370 - MIR SINE MIR -55 207 66 210 293 10 50 chr11 42935402 42935501 -107848052 + MIR3 SINE MIR 113 207 -1 205 293 101 20 chr11 42936033 42936132 -107847421 - MIR3 SINE MIR -1 207 101 573 279 127 22 chr11 42936400 42936676 -107846877 + MLT1H LTR MaLR 218 522 -27 18640 110 9 18 chr11 42937074 42938669 -107844884 + L1PA7 LINE L1 1027 2635 -3519 1919 103 65 14 chr11 42938669 42938960 -107844593 + AluY SINE Alu 1 306 -5 18640 110 9 18 chr11 42938960 42942268 -107841285 + L1PA7 LINE L1 2635 6154 0 938 199 112 0 chr11 42942565 42942761 -107840792 - MER20 DNA MER1_type 0 219 2 271 311 16 82 chr11 42942999 42943182 -107840371 + MLT1J LTR MaLR 291 461 -50 295 388 25 72 chr11 42943395 42943715 -107839838 + L2 LINE L2 2968 3272 0 457 209 95 27 chr11 42943721 42943869 -107839684 + L1ME4a LINE L1 5960 6117 -4 356 198 189 0 chr11 42945807 42945918 -107837635 + MER58 DNA MER1_type 45 176 -165 4511 161 51 9 chr11 42945918 42947030 -107836523 + L1MA8 LINE L1 4459 5613 -678 675 135 71 0 chr11 42947030 42947169 -107836384 + L1MA8 LINE L1 6139 6289 -2 738 163 8 0 chr11 42947180 42947303 -107836250 + MER58 DNA MER1_type 151 274 -2146 1156 214 30 15 chr11 42947354 42947681 -107835872 - MER33 DNA MER1_type -4 320 1 424 345 46 21 chr11 42947931 42948169 -107835384 - L3 LINE CR1 -492 1085 842 444 297 34 14 chr11 42949026 42949174 -107834379 - MIR SINE MIR -26 236 86 478 363 26 9 chr11 42949861 42950087 -107833466 + MIR SINE MIR 1 230 -32 4156 236 37 9 chr11 42952410 42953420 -107830133 + MER45B DNA AcHobo 2 1039 -1 344 279 48 113 chr11 42953443 42953672 -107829881 - L2 LINE L2 -199 3073 2860 282 345 113 11 chr11 42953783 42953960 -107829593 - MIR SINE MIR -1 261 67 222 340 146 19 chr11 42953990 42954082 -107829471 + L2 LINE L2 3149 3257 -15 186 43 0 0 chr11 42954082 42954105 -107829448 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 329 316 199 0 chr11 42954245 42954416 -107829137 + MIR3 SINE MIR 4 208 0 1792 142 0 60 chr11 42954501 42954832 -107828721 - AluSx SINE Alu -1 311 1 189 147 0 0 chr11 42954872 42954906 -107828647 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 6372 82 5 15 chr11 42955341 42956328 -107827225 + L1PA10 LINE L1 5197 6167 -1 213 298 0 0 chr11 42956995 42957052 -107826501 + (CAT)n Simple_repeat Simple_repeat 3 59 0 1886 209 111 89 chr11 42958914 42959008 -107824545 - MER63C DNA MER1_type -130 931 841 195 69 0 0 chr11 42959008 42959037 -107824516 + (TTAAA)n Simple_repeat Simple_repeat 3 31 0 1886 209 111 89 chr11 42959037 42959422 -107824131 - MER63C DNA MER1_type -220 841 466 2731 16 0 0 chr11 42959422 42959729 -107823824 - AluY SINE Alu -4 307 1 1886 209 111 89 chr11 42959729 42960118 -107823435 - MER63C DNA MER1_type -595 466 11 24 32 0 0 chr11 42960590 42960621 -107822932 + AT_rich Low_complexity Low_complexity 1 31 0 326 331 98 0 chr11 42960629 42960792 -107822761 + L1MC4a LINE L1 5682 5860 -1948 203 294 43 87 chr11 42962001 42962093 -107821460 - L2 LINE L2 0 3272 3185 2221 110 0 0 chr11 42962098 42962398 -107821155 - AluY SINE Alu -11 300 1 1097 289 94 34 chr11 42962400 42962868 -107820685 + L2 LINE L2 2818 3313 0 2022 137 0 13 chr11 42963309 42963608 -107819945 + AluSx SINE Alu 3 297 -15 1862 167 7 7 chr11 42963631 42963925 -107819628 + AluJb SINE Alu 1 294 -18 216 0 0 0 chr11 42963937 42963961 -107819592 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr11 42964222 42964252 -107819301 + AT_rich Low_complexity Low_complexity 1 30 0 376 288 101 7 chr11 42964404 42964543 -107819010 + MIR3 SINE MIR 51 202 -6 1681 116 0 0 chr11 42965235 42965459 -107818094 - AluSq SINE Alu -89 224 1 2895 15 0 0 chr11 42966743 42967077 -107816476 + L1PA2 LINE L1 5822 6155 0 21 0 0 0 chr11 42967101 42967122 -107816431 + AT_rich Low_complexity Low_complexity 1 21 0 1691 100 129 0 chr11 42967138 42967379 -107816174 + AluSg1 SINE Alu 26 297 -12 280 336 74 32 chr11 42967634 42967851 -107815702 - MIR SINE MIR -31 231 6 256 286 11 79 chr11 42969714 42969892 -107813661 - L2 LINE L2 -1217 2097 1932 198 265 129 45 chr11 42970112 42970244 -107813309 + MIR SINE MIR 119 261 -1 466 312 0 7 chr11 42971531 42971669 -107811884 - L2 LINE L2 -520 2794 2658 22 0 0 0 chr11 42972204 42972226 -107811327 + AT_rich Low_complexity Low_complexity 1 22 0 823 300 40 77 chr11 42973259 42973354 -107810199 + L2 LINE L2 2657 2754 -559 2153 127 0 0 chr11 42973354 42973662 -107809891 - AluSx SINE Alu -4 308 1 2176 116 20 0 chr11 42973667 42973968 -107809585 - AluSc SINE Alu -2 307 1 823 300 40 77 chr11 42973968 42974556 -107808997 + L2 LINE L2 2758 3313 0 952 107 8 0 chr11 42974885 42975016 -107808537 - AluY SINE Alu -179 132 1 254 315 137 30 chr11 42975166 42975226 -107808327 - MIR SINE MIR -5 257 205 2256 116 0 0 chr11 42975226 42975528 -107808025 - AluSg SINE Alu -8 302 1 254 315 137 30 chr11 42975528 42975664 -107807889 - MIR SINE MIR -57 205 40 918 267 0 4 chr11 42975670 42975895 -107807658 + MER58A DNA MER1_type 1 224 0 618 219 8 0 chr11 42975896 42976019 -107807534 + L2 LINE L2 3190 3313 0 186 43 0 0 chr11 42976072 42976095 -107807458 + (T)n Simple_repeat Simple_repeat 1 23 0 221 404 41 20 chr11 42977274 42977420 -107806133 + MIR3 SINE MIR 16 164 -44 649 277 85 21 chr11 42978639 42978874 -107804679 - MIR SINE MIR 0 262 13 207 157 0 0 chr11 42978883 42978934 -107804619 + T-rich Low_complexity Low_complexity 1 51 0 344 0 0 0 chr11 42978941 42978984 -107804569 - L1PA4 LINE L1 -3 6152 6110 188 250 23 0 chr11 42980332 42980376 -107803177 + L3 LINE CR1 565 609 -968 1897 147 29 47 chr11 42981060 42981442 -107802111 - THE1C LTR MaLR 0 375 1 2002 122 31 3 chr11 42982301 42982587 -107800966 - AluSg SINE Alu -16 294 1 6866 62 42 0 chr11 42982740 42983720 -107799833 - L1PA7 LINE L1 -8 6146 5154 203 133 22 0 chr11 42983798 42983843 -107799710 + A-rich Low_complexity Low_complexity 3 48 0 286 299 11 11 chr11 42983970 42984057 -107799496 - MIR3 SINE MIR -36 172 86 26 30 0 0 chr11 42984904 42984937 -107798616 + AT_rich Low_complexity Low_complexity 1 33 0 319 368 27 0 chr11 42985207 42985430 -107798123 + L1M4 LINE L1 3073 3301 -2845 2309 109 0 3 chr11 42985470 42985781 -107797772 - AluSg SINE Alu 0 310 1 378 221 29 0 chr11 42985794 42985898 -107797655 + L1M4 LINE L1 3343 3449 -2697 2076 100 0 27 chr11 42985898 42986198 -107797355 + L1P LINE L1 2 293 -5853 271 43 109 0 chr11 42986186 42986232 -107797321 + L1P LINE L1 966 1016 -5130 * 7566 31 0 0 chr11 42986232 42987285 -107796268 + L1PA4 LINE L1 5097 6149 -6 275 349 68 0 chr11 42987289 42987435 -107796118 + MIR SINE MIR 51 206 -56 1013 208 22 90 chr11 42987445 42987811 -107795742 + L1M4 LINE L1 3439 3779 -2367 879 237 51 0 chr11 42987826 42988062 -107795491 + L1MB7 LINE L1 5921 6168 -16 262 309 83 22 chr11 42990545 42990775 -107792778 + HAL1 LINE L1 1115 1358 -1149 217 191 0 44 chr11 42990905 42990973 -107792580 + GA-rich Low_complexity Low_complexity 2 66 0 216 277 0 0 chr11 42990983 42991030 -107792523 + polypurine Low_complexity Low_complexity 4 50 0 * 221 171 0 0 chr11 42990996 42991031 -107792522 + A-rich Low_complexity Low_complexity 1 35 0 228 67 0 0 chr11 42991193 42991223 -107792330 + (A)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr11 42991323 42991347 -107792206 + AT_rich Low_complexity Low_complexity 1 24 0 538 336 57 9 chr11 42991960 42992189 -107791364 + MLT1J LTR MaLR 5 244 -267 212 250 42 0 chr11 42993069 42993141 -107790412 + (CATA)n Simple_repeat Simple_repeat 2 76 0 217 309 0 0 chr11 42994294 42994349 -107789204 - L2 LINE L2 -17 3296 3242 276 336 106 0 chr11 42994896 42995009 -107788544 + L2 LINE L2 3148 3272 0 716 273 34 19 chr11 42995520 42995729 -107787824 + MIR SINE MIR 38 249 -13 213 147 0 59 chr11 42995852 42995920 -107787633 + (TTATA)n Simple_repeat Simple_repeat 3 66 0 186 43 0 0 chr11 42996685 42996708 -107786845 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1391 226 26 57 chr11 42996958 42997379 -107786174 - MLT2D LTR ERVL -6 408 1 8478 100 3 1 chr11 42997890 42999032 -107784521 + L1P3 LINE L1 8 1152 -5309 212 277 57 63 chr11 42999689 42999848 -107783705 - L2 LINE L2 -8 3305 3148 351 0 0 0 chr11 43000511 43000550 -107783003 + (TG)n Simple_repeat Simple_repeat 1 39 0 330 275 106 0 chr11 43000902 43001044 -107782509 - MER103 DNA DNA 0 166 10 7058 185 34 5 chr11 43001155 43003630 -107779923 + L1PB4 LINE L1 3607 6155 -1 272 385 73 5 chr11 43003699 43003891 -107779662 - MIR SINE MIR -10 252 48 2232 109 7 3 chr11 43004484 43004786 -107778767 - AluSg SINE Alu -7 303 1 2163 144 19 30 chr11 43005954 43006322 -107777231 + THE1B LTR MaLR 1 364 0 879 53 9 0 chr11 43006693 43006806 -107776747 - L1PA6 LINE L1 -7 6147 6034 26 0 0 0 chr11 43007173 43007199 -107776354 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 43007357 43007379 -107776174 + AT_rich Low_complexity Low_complexity 1 22 0 250 355 41 0 chr11 43007444 43007565 -107775988 - L2 LINE L2 -6 3307 3182 225 0 0 0 chr11 43008491 43008516 -107775037 + (TAAAAA)n Simple_repeat Simple_repeat 4 28 0 1685 116 35 0 chr11 43008525 43008784 -107774769 + L1PA15 LINE L1 5896 6163 -2 1571 200 17 0 chr11 43008866 43009211 -107774342 + L1MA9 LINE L1 5785 6135 -177 207 245 53 21 chr11 43010053 43010147 -107773406 + MIR SINE MIR 120 216 -46 1793 181 0 7 chr11 43010599 43010909 -107772644 - AluJb SINE Alu -1 311 4 251 294 51 51 chr11 43010919 43011096 -107772457 + L1MCc LINE L1 124 300 -6123 312 281 129 7 chr11 43011869 43012008 -107771545 + L1MC4 LINE L1 6604 6759 -1283 860 295 101 48 chr11 43012038 43012730 -107770823 + L1MC4a LINE L1 5326 6054 -1754 263 261 145 0 chr11 43013094 43013163 -107770390 + L1MD3 LINE L1 6668 6746 -1249 461 283 26 7 chr11 43013181 43013333 -107770220 + L1MC4 LINE L1 6856 7010 -1032 558 284 161 81 chr11 43013557 43013753 -107769800 + L1MC4 LINE L1 7099 7278 -764 3767 94 22 0 chr11 43013753 43014295 -107769258 + L1PA13 LINE L1 5610 6163 0 558 284 161 81 chr11 43014295 43014826 -107768727 + L1MC4 LINE L1 7278 7884 -158 327 163 100 0 chr11 43015334 43015414 -107768139 + MLT1J LTR MaLR 416 503 -8 583 257 12 46 chr11 43015490 43015683 -107767870 + MLT1D LTR MaLR 4 187 -350 240 247 53 106 chr11 43016008 43016178 -107767375 - MIR SINE MIR -30 232 72 213 305 38 57 chr11 43017067 43017172 -107766381 + MIR SINE MIR 3 105 -157 189 362 43 0 chr11 43017417 43017511 -107766042 + L2 LINE L2 2950 3047 -225 313 270 139 43 chr11 43018006 43018121 -107765432 - L2 LINE L2 0 3272 3147 222 217 43 0 chr11 43018209 43018255 -107765298 + L2 LINE L2 3261 3308 -5 1818 158 7 7 chr11 43019132 43019416 -107764137 + AluSq SINE Alu 1 284 -29 2297 245 85 5 chr11 43019452 43020055 -107763498 - MLT1E1 LTR MaLR -3 651 1 251 340 65 35 chr11 43020946 43021146 -107762407 + MLT1K LTR MaLR 198 403 -185 229 267 22 7 chr11 43021146 43021281 -107762272 + (TA)n Simple_repeat Simple_repeat 1 137 0 251 314 29 57 chr11 43021412 43021552 -107762001 + MLT1K LTR MaLR 446 581 -7 859 344 74 0 chr11 43021960 43022312 -107761241 + LTR33 LTR ERVL 2 379 -142 182 320 204 17 chr11 43022978 43023150 -107760403 + MIR SINE MIR 19 222 -40 816 200 12 0 chr11 43023950 43024115 -107759438 - AluSg/x SINE Alu 0 312 146 21 0 0 0 chr11 43024284 43024305 -107759248 + GC_rich Low_complexity Low_complexity 1 21 0 2155 110 13 7 chr11 43024919 43025229 -107758324 - AluSx SINE Alu 0 312 1 756 159 36 0 chr11 43025398 43025536 -107758017 - L1MA9 LINE L1 0 6312 6170 28 0 0 0 chr11 43025607 43025635 -107757918 + AT_rich Low_complexity Low_complexity 1 28 0 2166 98 14 0 chr11 43026227 43026512 -107757041 + AluSq SINE Alu 5 293 -20 261 308 56 56 chr11 43027271 43027414 -107756139 + MIR3 SINE MIR 38 180 -28 248 278 96 17 chr11 43027670 43027785 -107755768 + MIR SINE MIR 89 212 -50 240 219 16 16 chr11 43028709 43028773 -107754780 + (ATG)n Simple_repeat Simple_repeat 2 65 0 277 330 168 11 chr11 43029199 43029378 -107754175 + MIR SINE MIR 26 232 -30 369 0 0 0 chr11 43029378 43029393 -107754160 + (CA)n Simple_repeat Simple_repeat 1 56 0 369 0 0 0 chr11 43029393 43029434 -107754119 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr11 43029485 43029507 -107754046 + AT_rich Low_complexity Low_complexity 1 22 0 1962 157 11 14 chr11 43029512 43029868 -107753685 - THE1A LTR MaLR 0 355 1 11456 101 1 8 chr11 43029868 43031458 -107752095 - THE1A-int LTR MaLR 0 1580 1 1999 160 14 6 chr11 43031458 43031808 -107751745 - THE1A LTR MaLR 0 355 3 391 247 12 0 chr11 43032404 43032485 -107751068 + L2 LINE L2 3232 3313 0 207 170 0 0 chr11 43033315 43033362 -107750191 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 368 329 104 26 chr11 43036181 43036611 -107746942 + L1ME LINE L1 5057 5529 -773 1977 129 3 57 chr11 43036837 43037155 -107746398 - AluSx SINE Alu -11 301 1 311 256 207 15 chr11 43038075 43038278 -107745275 + L1ME LINE L1 5541 5782 -339 41 0 0 0 chr11 43038577 43038618 -107744935 + AT_rich Low_complexity Low_complexity 1 41 0 376 119 0 24 chr11 43039254 43039338 -107744215 + (TA)n Simple_repeat Simple_repeat 2 83 0 1067 159 5 15 chr11 43041310 43041505 -107742048 + AluSg/x SINE Alu 120 312 0 237 226 48 48 chr11 43041878 43041940 -107741613 - MLT1F LTR MaLR -480 62 1 2536 68 0 0 chr11 43042067 43042378 -107741175 + AluY SINE Alu 1 311 0 207 329 44 44 chr11 43042427 43042564 -107740989 - L2 LINE L2 -206 3066 2930 279 276 65 24 chr11 43042645 43042768 -107740785 - L2 LINE L2 -533 2781 2654 321 339 91 24 chr11 43043245 43043409 -107740144 + MIR SINE MIR 47 221 -41 576 346 21 4 chr11 43043409 43043643 -107739910 + MIR SINE MIR 2 239 -23 21 0 0 0 chr11 43043719 43043740 -107739813 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 43045168 43045198 -107738355 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr11 43045338 43045375 -107738178 + AT_rich Low_complexity Low_complexity 1 37 0 6481 68 24 0 chr11 43046744 43048346 -107735207 + L1PA7 LINE L1 4535 6148 -6 1160 139 19 14 chr11 43048539 43048754 -107734799 - Tigger1 DNA MER2_type -1560 858 643 1047 131 0 0 chr11 43048750 43048910 -107734643 + Tigger1 DNA MER2_type 1509 1668 -750 * 2041 150 18 2 chr11 43048911 43049310 -107734243 + Tigger1 DNA MER2_type 863 1353 -1065 3371 184 46 0 chr11 43049315 43049928 -107733625 - Tigger1 DNA MER2_type -1777 641 1 211 151 0 38 chr11 43050533 43050586 -107732967 + (TTCA)n Simple_repeat Simple_repeat 1 51 0 2179 106 0 0 chr11 43050687 43051012 -107732541 + AluSc SINE Alu 1 325 0 1765 143 0 25 chr11 43051148 43051428 -107732125 - AluSx SINE Alu -39 273 1 246 30 0 0 chr11 43051429 43051462 -107732091 + L1MB3 LINE L1 6043 6075 -108 1126 119 12 6 chr11 43051462 43051630 -107731923 + THE1B LTR MaLR 1 169 -195 485 234 0 0 chr11 43051645 43051752 -107731801 + MER3 DNA MER1_type 62 168 -41 3090 215 44 7 chr11 43051752 43052571 -107730982 - L1MB3 LINE L1 -128 6055 5207 243 171 68 0 chr11 43052622 43052710 -107730843 + (TA)n Simple_repeat Simple_repeat 1 94 0 246 344 0 31 chr11 43053623 43053719 -107729834 + L2 LINE L2 3168 3260 -12 * 345 343 102 31 chr11 43053713 43054133 -107729420 - L2 LINE L2 -1 3312 2863 2211 112 0 0 chr11 43054157 43054452 -107729101 + AluY SINE Alu 1 295 -16 1700 256 64 74 chr11 43054587 43056289 -107727264 + L1ME3A LINE L1 4483 6168 -2 291 359 77 30 chr11 43056440 43056749 -107726804 - L2 LINE L2 -747 2567 2239 2067 118 17 0 chr11 43056749 43057038 -107726515 - AluSp SINE Alu -19 294 1 291 359 77 30 chr11 43057038 43057065 -107726488 - L2 LINE L2 -1075 2239 2215 4496 186 73 25 chr11 43057119 43058309 -107725244 + L1MA10 LINE L1 5086 6304 -30 473 343 22 19 chr11 43058344 43058612 -107724941 - L2 LINE L2 -1152 2162 1894 509 95 0 36 chr11 43058887 43058971 -107724582 + L1PA6 LINE L1 6067 6147 -7 34 24 0 0 chr11 43059197 43059238 -107724315 + AT_rich Low_complexity Low_complexity 1 41 0 251 313 34 41 chr11 43059427 43059574 -107723979 + MIR SINE MIR 117 262 0 298 343 152 14 chr11 43059850 43060060 -107723493 + MIR SINE MIR 17 255 -7 591 191 9 0 chr11 43060126 43060236 -107723317 - L1MC1 LINE L1 -12 6321 6211 528 365 28 8 chr11 43060964 43061219 -107722334 - MIR SINE MIR 0 262 3 23 0 0 0 chr11 43061370 43061393 -107722160 + AT_rich Low_complexity Low_complexity 1 23 0 1973 131 45 43 chr11 43061758 43062132 -107721421 - THE1C LTR MaLR 0 375 1 352 333 79 21 chr11 43062776 43062965 -107720588 + MIR SINE MIR 23 222 -40 373 302 138 5 chr11 43063040 43063229 -107720324 + MIR SINE MIR 49 262 0 352 242 311 11 chr11 43063419 43063609 -107719944 + MIR SINE MIR 8 254 -8 577 141 0 0 chr11 43063659 43063751 -107719802 - ALR/Alpha Satellite centromeric -23 149 58 290 356 17 0 chr11 43064940 43065055 -107718498 + L2 LINE L2 2728 2844 -470 638 234 23 79 chr11 43065055 43065179 -107718374 + MER5A DNA MER1_type 2 121 -68 2411 92 0 0 chr11 43065179 43065482 -107718071 - AluSc SINE Alu -6 303 1 638 234 23 79 chr11 43065482 43065543 -107718010 + MER5A DNA MER1_type 121 184 -5 893 291 39 70 chr11 43065561 43066043 -107717510 + L2 LINE L2 2846 3312 -1 447 253 129 35 chr11 43066249 43066451 -107717102 - MIR SINE MIR -37 225 5 296 250 25 12 chr11 43066894 43066974 -107716579 + MER5A DNA MER1_type 32 112 -77 597 228 95 13 chr11 43067042 43067200 -107716353 - MER5B DNA MER1_type -7 171 1 6042 46 10 15 chr11 43067251 43068029 -107715524 - L1PA5 LINE L1 -127 6027 5254 21 36 0 0 chr11 43068600 43068628 -107714925 + AT_rich Low_complexity Low_complexity 1 28 0 576 206 0 0 chr11 43070184 43070286 -107713267 - AluJo SINE Alu -24 288 187 * 660 179 0 0 chr11 43070285 43070397 -107713156 - AluJo SINE Alu -200 112 1 200 359 87 34 chr11 43070609 43070815 -107712738 + L2 LINE L2 3055 3271 -1 461 126 29 19 chr11 43070997 43071100 -107712453 + CT-rich Low_complexity Low_complexity 3 106 0 271 242 191 73 chr11 43071426 43071604 -107711949 - L1MEd LINE L1 -5396 723 525 189 370 58 7 chr11 43073993 43074131 -107709422 + L2 LINE L2 2945 3089 -224 231 213 64 0 chr11 43074242 43074289 -107709264 + L2 LINE L2 3258 3307 -6 22 0 0 0 chr11 43074412 43074434 -107709119 + AT_rich Low_complexity Low_complexity 1 22 0 699 35 0 0 chr11 43075048 43075134 -107708419 + (TTCC)n Simple_repeat Simple_repeat 4 89 0 285 302 183 18 chr11 43075353 43075522 -107708031 + MIR SINE MIR 66 262 0 255 294 0 15 chr11 43075540 43075608 -107707945 - MIR SINE MIR -116 146 80 277 291 170 24 chr11 43075749 43075914 -107707639 - MIR SINE MIR -70 192 4 718 304 63 51 chr11 43076861 43077193 -107706360 - L2 LINE L2 -7 3306 2971 961 221 4 33 chr11 43077200 43077607 -107705946 + MLT1B LTR MaLR 12 458 -9 225 255 147 39 chr11 43077610 43077712 -107705841 - L2 LINE L2 -348 2966 2854 231 276 76 38 chr11 43077866 43077971 -107705582 - MIR SINE MIR -82 126 18 335 407 26 5 chr11 43080132 43080321 -107703232 + MIR3 SINE MIR 10 202 -6 321 292 127 91 chr11 43080388 43080748 -107702805 + L2 LINE L2 2906 3283 -30 2164 199 0 14 chr11 43080748 43081166 -107702387 + MLT2D LTR ERVL 3 414 0 321 292 127 91 chr11 43081166 43081199 -107702354 + L2 LINE L2 3283 3313 0 276 319 60 17 chr11 43081220 43081336 -107702217 - MIR3 SINE MIR -76 132 12 2070 136 0 3 chr11 43081929 43082239 -107701314 + AluSx SINE Alu 1 309 -3 780 141 14 0 chr11 43082523 43082665 -107700888 - L1P4 LINE L1 -669 5497 5354 2275 196 33 33 chr11 43082823 43083201 -107700352 - L1 LINE L1 -1388 4758 4378 2454 17 66 0 chr11 43083201 43083488 -107700065 - AluY SINE Alu -5 306 1 2275 196 33 33 chr11 43083488 43083707 -107699846 - L1 LINE L1 -1767 4379 4161 1294 109 0 16 chr11 43084061 43084253 -107699300 + MER30B DNA MER1_type 2 190 0 24 32 0 0 chr11 43084399 43084430 -107699123 + AT_rich Low_complexity Low_complexity 1 31 0 225 303 0 123 chr11 43085327 43085482 -107698071 + MIR SINE MIR 5 140 -122 203 356 148 9 chr11 43085733 43085848 -107697705 + MIR SINE MIR 30 160 -102 13347 163 37 8 chr11 43086236 43088580 -107694973 - Tigger1 DNA MER2_type 0 2418 6 243 0 0 0 chr11 43088683 43088710 -107694843 + (TA)n Simple_repeat Simple_repeat 2 28 0 2329 42 0 0 chr11 43089224 43089507 -107694046 - L1PA5 LINE L1 -11 6143 5861 342 0 0 0 chr11 43089759 43089797 -107693756 + (TA)n Simple_repeat Simple_repeat 2 39 0 4458 97 6 28 chr11 43090878 43091364 -107692189 - L1PA14 LINE L1 -3 6158 5691 1681 175 7 7 chr11 43091364 43091667 -107691886 - AluSx SINE Alu -9 303 1 4458 97 6 28 chr11 43091667 43091883 -107691670 - L1PA14 LINE L1 -470 5691 5472 677 89 10 10 chr11 43091940 43092041 -107691512 - L1PA14 LINE L1 -694 5467 5367 300 70 0 0 chr11 43092609 43092652 -107690901 + (TG)n Simple_repeat Simple_repeat 2 44 0 317 331 15 15 chr11 43093002 43093138 -107690415 + MIR SINE MIR 66 201 -61 371 305 107 15 chr11 43093389 43093520 -107690033 + MIR3 SINE MIR 40 182 -26 2519 69 0 0 chr11 43093591 43093894 -107689659 - AluY SINE Alu -8 303 1 220 308 77 0 chr11 43094669 43094773 -107688780 - MIR SINE MIR -92 170 59 484 290 49 90 chr11 43094883 43095293 -107688260 + LTR16B LTR ERVL 64 456 -8 2673 322 40 31 chr11 43095394 43096743 -107686810 + HERV16 LTR ERVL 37 1397 -3599 469 321 16 16 chr11 43097233 43097426 -107686127 + HERV16 LTR ERVL 4787 4979 -17 473 332 46 40 chr11 43097576 43097925 -107685628 + LTR16B LTR ERVL 97 447 -17 207 0 0 0 chr11 43098269 43098292 -107685261 + (T)n Simple_repeat Simple_repeat 1 23 0 277 321 66 28 chr11 43098820 43098926 -107684627 - MIR SINE MIR -117 145 36 1513 254 54 44 chr11 43099367 43099900 -107683653 + MLT1F1 LTR MaLR 31 567 0 241 265 0 15 chr11 43100871 43100939 -107682614 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 242 309 32 32 chr11 43100957 43101083 -107682470 + MIR SINE MIR 121 246 -16 21 36 0 0 chr11 43101158 43101186 -107682367 + AT_rich Low_complexity Low_complexity 1 28 0 216 226 32 0 chr11 43101362 43101455 -107682098 + (TA)n Simple_repeat Simple_repeat 2 97 0 303 271 90 45 chr11 43101458 43101635 -107681918 + L1ME4a LINE L1 5935 6119 -2 24 32 0 0 chr11 43102247 43102278 -107681275 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr11 43102673 43102695 -107680858 + AT_rich Low_complexity Low_complexity 1 22 0 265 341 7 58 chr11 43102827 43102965 -107680588 - MIR SINE MIR -60 148 18 197 362 19 71 chr11 43104902 43105112 -107678441 + L2 LINE L2 2892 3090 -182 207 323 0 0 chr11 43105189 43105251 -107678302 + L2 LINE L2 3210 3271 -1 269 284 102 40 chr11 43105283 43105459 -107678094 + MIR SINE MIR 76 262 0 838 229 5 10 chr11 43105993 43106198 -107677355 - MER115 DNA AcHobo 0 693 490 356 346 34 6 chr11 43106430 43106609 -107676944 - MER115 DNA AcHobo -502 191 8 394 284 0 11 chr11 43106911 43107006 -107676547 + MER81 DNA DNA 21 114 0 231 410 42 24 chr11 43108243 43108409 -107675144 + L2 LINE L2 3104 3272 0 522 209 36 0 chr11 43108862 43108972 -107674581 + MER94 DNA DNA 1 114 -20 767 201 28 0 chr11 43109052 43109196 -107674357 + MER20B DNA MER1_type 17 164 -55 2412 62 3 0 chr11 43109332 43109624 -107673929 - AluY SINE Alu -2 309 17 315 49 0 0 chr11 43109635 43109676 -107673877 + (T)n Simple_repeat Simple_repeat 1 41 0 26 0 0 0 chr11 43110168 43110194 -107673359 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr11 43110266 43110291 -107673262 + AT_rich Low_complexity Low_complexity 1 25 0 451 270 13 63 chr11 43110775 43110934 -107672619 - MER63A DNA MER1_type 0 210 60 21 36 0 0 chr11 43111683 43111711 -107671842 + AT_rich Low_complexity Low_complexity 1 28 0 2363 73 0 7 chr11 43112228 43112531 -107671022 + AluY SINE Alu 1 301 -10 3682 277 43 26 chr11 43114407 43115519 -107668034 + L1MD1 LINE L1 13 1143 -5397 850 258 26 4 chr11 43115545 43115812 -107667741 + L1MD1 LINE L1 5328 5600 -940 3143 203 20 10 chr11 43115816 43116507 -107667046 + L1MD1 LINE L1 5938 6635 -1 208 121 0 0 chr11 43116791 43116824 -107666729 + (CA)n Simple_repeat Simple_repeat 2 34 0 569 243 97 113 chr11 43116834 43117642 -107665911 + LTR50 LTR ERVL 1 795 0 2256 87 0 0 chr11 43118111 43118399 -107665154 - AluY SINE Alu -23 288 1 4885 75 181 4 chr11 43120261 43121045 -107662508 - MER11A LTR ERVK -1 1265 343 528 86 38 19 chr11 43121145 43121250 -107662303 - MER11A LTR ERVK -1159 107 1 1586 158 118 31 chr11 43121527 43121983 -107661570 + LTR54B LTR ERV1 1 496 -2 214 208 19 19 chr11 43122696 43122749 -107660804 + GA-rich Low_complexity Low_complexity 2 54 0 234 219 70 102 chr11 43122891 43122961 -107660592 - MIR SINE MIR -12 250 184 1267 192 69 30 chr11 43122961 43123368 -107660185 + LTR37A LTR ERV1 3 425 -1 234 219 70 102 chr11 43123368 43123425 -107660128 - MIR SINE MIR -78 184 127 236 314 14 0 chr11 43123457 43123527 -107660026 - L2 LINE L2 -13 3259 3189 293 207 98 12 chr11 43123785 43123867 -107659686 - MIR SINE MIR -64 198 110 181 368 23 11 chr11 43123933 43124020 -107659533 - MIR SINE MIR -114 148 61 1469 171 115 9 chr11 43124172 43124511 -107659042 + THE1C LTR MaLR 1 375 0 9607 127 12 30 chr11 43124511 43126114 -107657439 + THE1C-int LTR MaLR 1 1575 -5 1896 148 52 25 chr11 43126118 43126483 -107657070 + THE1C LTR MaLR 1 375 0 1714 143 195 19 chr11 43127111 43127475 -107656078 - MSTA LTR MaLR 0 428 1 212 283 19 38 chr11 43127572 43127678 -107655875 + CT-rich Low_complexity Low_complexity 74 177 0 236 351 42 30 chr11 43128415 43128580 -107654973 - MIR SINE MIR -50 212 46 487 158 21 11 chr11 43128758 43128853 -107654700 + MER4A LTR ERV1 3 98 -566 1463 148 19 78 chr11 43128853 43129218 -107654335 + MER4A LTR ERV1 263 664 0 2512 175 7 13 chr11 43129750 43130210 -107653343 - LTR26B LTR ERV1 0 531 75 6501 186 140 40 chr11 43130210 43131805 -107651748 + MER52A LTR ERV1 1 1755 0 487 128 0 0 chr11 43131805 43131883 -107651670 - LTR26B LTR ERV1 -453 78 1 864 251 81 80 chr11 43132927 43133090 -107650463 + MER20B DNA MER1_type 199 360 -423 7398 34 5 0 chr11 43133090 43133982 -107649571 + L1PA4 LINE L1 5259 6154 -1 864 251 81 80 chr11 43133982 43134384 -107649169 + MER20B DNA MER1_type 360 765 -18 475 288 7 20 chr11 43134979 43135132 -107648421 + LTR52 LTR ERVL 1 151 -270 1755 211 42 26 chr11 43135140 43135595 -107647958 + MLT1C LTR MaLR 6 467 0 766 231 43 21 chr11 43135627 43135861 -107647692 + LTR52 LTR ERVL 169 407 -14 2530 89 47 47 chr11 43136086 43136514 -107647039 + L1MA1 LINE L1 5875 6302 0 196 380 60 27 chr11 43137374 43137558 -107645995 + MIR3 SINE MIR 14 203 -5 346 326 84 31 chr11 43138245 43138506 -107645047 + L2 LINE L2 2682 2956 -358 287 304 58 22 chr11 43138678 43138816 -107644737 + L2 LINE L2 3167 3309 -4 800 285 16 27 chr11 43138820 43139076 -107644477 - MIR SINE MIR 0 262 10 229 301 44 35 chr11 43139074 43139187 -107644366 - MIR3 SINE MIR -85 123 10 * 36 0 0 0 chr11 43140025 43140061 -107643492 + AT_rich Low_complexity Low_complexity 1 36 0 240 167 93 0 chr11 43140218 43140272 -107643281 + MIR3 SINE MIR 125 183 -25 21 36 0 0 chr11 43141006 43141034 -107642519 + AT_rich Low_complexity Low_complexity 1 28 0 423 283 96 28 chr11 43142098 43142275 -107641278 - MIR SINE MIR -71 191 3 2423 116 8 6 chr11 43142323 43142686 -107640867 - THE1B LTR MaLR 0 364 1 1057 305 78 42 chr11 43142835 43143589 -107639964 + L2 LINE L2 2521 3313 0 318 26 0 0 chr11 43144317 43144356 -107639197 + (GA)n Simple_repeat Simple_repeat 2 40 0 2480 28 0 3 chr11 43145259 43145574 -107637979 + AluY SINE Alu 1 314 0 338 353 0 8 chr11 43146326 43146448 -107637105 - MIR SINE MIR -94 168 48 389 260 33 19 chr11 43147773 43147901 -107635652 - MIR SINE MIR -64 144 38 194 324 130 19 chr11 43148477 43148585 -107634968 + L2 LINE L2 3142 3261 -11 234 289 107 33 chr11 43149066 43149122 -107634431 + MIR SINE MIR 25 75 -187 611 37 25 0 chr11 43149122 43149203 -107634350 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 2128 102 0 4 chr11 43149205 43149480 -107634073 - AluSx SINE Alu -32 280 7 234 289 107 33 chr11 43149480 43149541 -107634012 + MIR SINE MIR 75 154 -108 23 0 0 0 chr11 43149596 43149619 -107633934 + AT_rich Low_complexity Low_complexity 1 23 0 1398 219 3 64 chr11 43150384 43150713 -107632840 + AluJo SINE Alu 1 309 -3 2609 39 0 10 chr11 43151425 43151735 -107631818 - AluY SINE Alu -4 307 1 1078 262 57 6 chr11 43153295 43153646 -107629907 + L2 LINE L2 2328 2696 -618 1031 259 57 59 chr11 43153718 43154143 -107629410 + L2 LINE L2 2890 3313 0 1395 167 11 7 chr11 43154358 43154633 -107628920 - AluY SINE Alu -14 297 22 282 73 0 0 chr11 43154650 43154691 -107628862 + (T)n Simple_repeat Simple_repeat 1 41 0 258 296 8 88 chr11 43155323 43155448 -107628105 + L2 LINE L2 3192 3306 -7 1642 176 48 0 chr11 43155576 43155871 -107627682 + AluSx SINE Alu 1 309 -3 189 74 0 0 chr11 43155969 43155996 -107627557 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 475 246 7 18 chr11 43155996 43156172 -107627381 - L1MB7 LINE L1 -9 6157 5993 409 176 0 0 chr11 43156338 43156406 -107627147 - AluSg/x SINE Alu -39 270 203 261 0 0 0 chr11 43156579 43156608 -107626945 + (TG)n Simple_repeat Simple_repeat 1 29 0 1684 145 49 78 chr11 43156644 43157030 -107626523 - THE1C LTR MaLR 0 375 1 215 156 0 22 chr11 43157983 43158028 -107625525 + T-rich Low_complexity Low_complexity 5 48 0 2358 90 0 3 chr11 43158141 43158452 -107625101 + AluSg SINE Alu 1 310 0 2244 100 13 3 chr11 43159033 43159334 -107624219 - AluSq SINE Alu -9 304 1 1376 170 17 7 chr11 43159341 43159629 -107623924 - L1MA4 LINE L1 -2 6298 6008 636 255 7 7 chr11 43159839 43159992 -107623561 + MER45 DNA AcHobo 1415 1567 -14 252 0 0 0 chr11 43160695 43160723 -107622830 + (TA)n Simple_repeat Simple_repeat 2 29 0 625 218 11 75 chr11 43160724 43160912 -107622641 - MER20 DNA MER1_type -43 176 1 2171 126 0 19 chr11 43161167 43161484 -107622069 + AluSx SINE Alu 1 311 -1 40527 38 21 1 chr11 43161990 43168018 -107615535 - L1PA2 LINE L1 -1 6154 5 258 324 93 0 chr11 43168033 43168141 -107615412 - MIR SINE MIR -66 196 79 1078 271 43 6 chr11 43168272 43168597 -107614956 + MER93a LTR ERV1 65 401 -1 780 233 6 45 chr11 43168833 43169009 -107614544 - MER5A DNA MER1_type -19 170 2 229 326 67 11 chr11 43169101 43169239 -107614314 - MIR SINE MIR -62 146 2 231 309 43 14 chr11 43169888 43170027 -107613526 + (CATATA)n Simple_repeat Simple_repeat 3 145 0 302 339 40 24 chr11 43170099 43170223 -107613330 + MIR3 SINE MIR 51 176 -32 23 0 0 0 chr11 43170374 43170397 -107613156 + AT_rich Low_complexity Low_complexity 1 23 0 568 308 14 24 chr11 43170737 43170948 -107612605 - MIR SINE MIR -6 256 48 303 363 137 0 chr11 43171026 43171216 -107612337 - MIR SINE MIR -6 256 41 218 192 19 0 chr11 43172016 43172068 -107611485 + CT-rich Low_complexity Low_complexity 2 54 0 2356 183 2 12 chr11 43172823 43173314 -107610239 - L1MA3 LINE L1 -1 6304 5819 852 153 20 0 chr11 43173315 43173465 -107610088 + L1MA3 LINE L1 5669 5821 -479 246 288 0 0 chr11 43174966 43175025 -107608528 + MIR SINE MIR 202 260 -2 651 315 98 65 chr11 43175473 43175683 -107607870 + L2 LINE L2 2806 3008 -305 1647 171 18 14 chr11 43175683 43175969 -107607584 + AluJo SINE Alu 1 287 -25 651 315 98 65 chr11 43175969 43176250 -107607303 + L2 LINE L2 3008 3313 0 499 359 22 0 chr11 43176726 43176957 -107606596 - MIR SINE MIR -14 248 13 312 339 1 37 chr11 43177929 43178095 -107605458 - MER5A DNA MER1_type -16 164 2 23 0 0 0 chr11 43178318 43178341 -107605212 + AT_rich Low_complexity Low_complexity 1 23 0 2230 109 0 19 chr11 43178424 43178736 -107604817 + AluSc SINE Alu 1 306 -3 203 260 57 24 chr11 43179053 43179176 -107604377 + GA-rich Low_complexity Low_complexity 4 130 0 303 303 106 8 chr11 43179240 43179372 -107604181 - MER69A DNA AcHobo -31 146 2 24 0 0 0 chr11 43180855 43180879 -107602674 + AT_rich Low_complexity Low_complexity 1 24 0 228 317 10 10 chr11 43180920 43181021 -107602532 + GA-rich Low_complexity Low_complexity 2 102 0 902 306 75 65 chr11 43181517 43182167 -107601386 + L1M3d LINE L1 1 657 -5234 619 312 72 8 chr11 43182541 43182916 -107600637 + L1M3d LINE L1 691 1089 -4802 * 2474 242 113 20 chr11 43182909 43183398 -107600155 + L1M4c LINE L1 1260 1702 -4682 3899 179 23 29 chr11 43183398 43184188 -107599365 + LTR1 LTR ERV1 1 785 0 2474 242 113 20 chr11 43184188 43184787 -107598766 + L1M4c LINE L1 1702 2449 -3935 2252 218 31 8 chr11 43184915 43185433 -107598120 + L1MB3 LINE L1 5526 6055 -128 485 234 0 0 chr11 43185433 43185540 -107598013 - MER3 DNA MER1_type -41 168 62 1126 119 12 6 chr11 43185555 43185723 -107597830 - THE1B LTR MaLR -195 169 1 246 30 0 0 chr11 43185723 43185756 -107597797 - L1MB3 LINE L1 -108 6075 6043 1765 143 0 25 chr11 43185757 43186037 -107597516 + AluSx SINE Alu 1 273 -39 2211 98 3 25 chr11 43186180 43186496 -107597057 - AluSc SINE Alu 0 309 1 211 151 0 38 chr11 43186597 43186650 -107596903 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 1226 302 103 30 chr11 43187850 43188492 -107595061 - MER115 DNA AcHobo 0 4031 1 821 311 29 0 chr11 43188498 43188736 -107594817 + MIR SINE MIR 15 259 -3 1996 116 3 11 chr11 43188894 43189202 -107594351 - AluSg SINE Alu 0 306 1 344 256 15 53 chr11 43189561 43189694 -107593859 + L1M4c LINE L1 2690 2817 -3565 2400 77 0 0 chr11 43192214 43192524 -107591029 - AluY SINE Alu -1 310 1 24 0 0 0 chr11 43192692 43192716 -107590837 + AT_rich Low_complexity Low_complexity 1 24 0 371 337 136 61 chr11 43192919 43193108 -107590445 + L2 LINE L2 2823 2997 -316 467 72 0 14 chr11 43193108 43193177 -107590376 + (TG)n Simple_repeat Simple_repeat 2 69 0 371 337 136 61 chr11 43193177 43193444 -107590109 + L2 LINE L2 2997 3313 0 1803 193 5 27 chr11 43193528 43193901 -107589652 - MLT1A1 LTR MaLR 0 365 1 607 320 36 5 chr11 43196246 43196465 -107587088 - MIR SINE MIR -21 241 16 284 302 0 0 chr11 43196578 43196641 -107586912 + MER69 DNA AcHobo 4 66 -2460 328 358 33 70 chr11 43196963 43197206 -107586347 + L2 LINE L2 3033 3266 -6 329 219 16 0 chr11 43197813 43197877 -107585676 - MIR3 SINE MIR 0 208 144 1431 260 70 41 chr11 43198487 43199026 -107584527 + MLT1E LTR MaLR 39 593 0 266 401 13 32 chr11 43199055 43199212 -107584341 + MER5B DNA MER1_type 1 154 -24 432 198 12 0 chr11 43300015 43300096 -107483457 - AluSg/x SINE Alu -19 290 209 1117 83 14 0 chr11 43300096 43300241 -107483312 + AluSg/x SINE Alu 162 308 -2 1169 96 0 0 chr11 43300526 43300672 -107482881 + AluSq/x SINE Alu 1 146 -167 1296 169 19 72 chr11 43300772 43301079 -107482474 - MLT1B LTR MaLR -94 296 6 1646 195 16 10 chr11 43302152 43302460 -107481093 - AluJb SINE Alu -2 310 1 253 231 39 77 chr11 43302460 43302590 -107480963 + HAL1 LINE L1 811 935 -1572 287 266 89 45 chr11 43302596 43302976 -107480577 + HAL1 LINE L1 880 1276 -1231 663 154 54 31 chr11 43303039 43303169 -107480384 + FLAM_C SINE Alu 6 138 -5 9518 127 33 2 chr11 43303300 43304666 -107478887 - L1P LINE L1 -3594 2552 1145 10470 54 4 5 chr11 43304857 43306161 -107477392 + L1P LINE L1 3 1305 -4841 7571 32 0 0 chr11 43306262 43307271 -107476282 + L1PA4 LINE L1 5171 6179 0 212 320 164 0 chr11 43308137 43308265 -107475288 + MIR SINE MIR 39 187 -75 291 280 47 28 chr11 43308285 43308392 -107475161 + MER91C DNA MER1_type 32 140 0 210 158 0 0 chr11 43308905 43308943 -107474610 + (TA)n Simple_repeat Simple_repeat 2 39 0 224 273 118 18 chr11 43309234 43309344 -107474209 - MIR3 SINE MIR -81 127 7 21 0 0 0 chr11 43309541 43309562 -107473991 + AT_rich Low_complexity Low_complexity 1 21 0 185 206 27 96 chr11 43309719 43309792 -107473761 - L3 LINE CR1 -5 1572 1505 338 350 32 0 chr11 43309799 43309939 -107473614 + MIR SINE MIR 45 187 -62 302 327 123 39 chr11 43309963 43310223 -107473330 + L2 LINE L2 2990 3271 -42 540 330 40 16 chr11 43310525 43310828 -107472725 - L3 LINE CR1 -80 1497 1188 1582 235 56 124 chr11 43311256 43311462 -107472091 + MLT1E2 LTR MaLR 1 219 -407 1561 215 0 7 chr11 43311462 43311760 -107471793 - AluJo SINE Alu -16 296 1 1582 235 56 124 chr11 43311760 43312162 -107471391 + MLT1E2 LTR MaLR 219 563 -63 928 123 0 0 chr11 43312162 43312308 -107471245 - L1MA4 LINE L1 -12 6288 6143 1582 235 56 124 chr11 43312308 43312361 -107471192 + MLT1E2 LTR MaLR 563 618 -8 2033 132 3 0 chr11 43313275 43313562 -107469991 - AluSx SINE Alu -19 293 6 911 306 56 14 chr11 43313759 43314119 -107469434 + MLT1I LTR MaLR 1 375 -34 378 231 0 0 chr11 43314497 43314588 -107468965 + (TATG)n Simple_repeat Simple_repeat 2 92 0 1311 188 26 16 chr11 43314928 43315232 -107468321 + L1MA4 LINE L1 5988 6294 -6 213 39 0 0 chr11 43315566 43315592 -107467961 + (TC)n Simple_repeat Simple_repeat 1 26 0 644 311 16 69 chr11 43315727 43316032 -107467521 + MLT1I LTR MaLR 110 398 -11 218 324 43 36 chr11 43316086 43316225 -107467328 + MIR SINE MIR 11 150 -112 275 338 0 0 chr11 43316228 43316296 -107467257 - L2 LINE L2 -17 3296 3229 305 310 63 19 chr11 43316764 43316922 -107466631 + L1MC/D LINE L1 5325 5489 -2319 407 180 34 0 chr11 43317536 43317625 -107465928 + AluS SINE Alu 1 92 -220 40 21 0 0 chr11 43318557 43318604 -107464949 + AT_rich Low_complexity Low_complexity 1 47 0 226 260 0 0 chr11 43318848 43318898 -107464655 - MIR SINE MIR 0 262 213 27 49 0 0 chr11 43318976 43319017 -107464536 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 43319469 43319490 -107464063 + AT_rich Low_complexity Low_complexity 1 21 0 556 176 0 0 chr11 43319611 43319713 -107463840 + L1PB4 LINE L1 6053 6154 -2 1231 41 0 0 chr11 43319913 43320060 -107463493 - AluY SINE Alu 0 311 165 559 327 93 14 chr11 43320295 43320650 -107462903 - LTR33 LTR ERVL -8 513 131 195 42 0 0 chr11 43321965 43321989 -107461564 + (TG)n Simple_repeat Simple_repeat 2 25 0 303 317 98 24 chr11 43322550 43322673 -107460880 - L2 LINE L2 0 3313 3182 227 277 12 48 chr11 43323209 43323292 -107460261 - L2 LINE L2 -76 3237 3158 625 322 140 24 chr11 43324859 43325316 -107458237 + L2 LINE L2 1974 2483 -831 408 269 0 106 chr11 43325305 43325532 -107458021 + L2 LINE L2 3101 3303 -10 * 1882 180 0 6 chr11 43325709 43326036 -107457517 + MER7A DNA MER2_type 2 324 -22 202 263 220 5 chr11 43326136 43326230 -107457323 + MIR SINE MIR 42 154 -68 468 0 0 0 chr11 43326326 43326378 -107457175 + (TA)n Simple_repeat Simple_repeat 1 52 0 618 86 11 0 chr11 43326648 43326741 -107456812 - AluY SINE Alu -11 300 207 432 0 0 0 chr11 43327533 43327581 -107455972 + (CA)n Simple_repeat Simple_repeat 2 49 0 9549 148 32 10 chr11 43327581 43329225 -107454328 + Tigger1 DNA MER2_type 10 1688 -730 1224 118 110 28 chr11 43329226 43329480 -107454073 + L1MA2 LINE L1 6030 6304 0 27 0 0 0 chr11 43329480 43329507 -107454046 + AT_rich Low_complexity Low_complexity 1 27 0 851 174 0 0 chr11 43329508 43329663 -107453890 + Tigger1 DNA MER2_type 1683 1837 -581 3264 143 27 38 chr11 43331299 43331762 -107451791 + Tigger1 DNA MER2_type 1820 2277 -141 2212 99 0 0 chr11 43331762 43332081 -107451472 + AluSx SINE Alu 1 319 0 3264 143 27 38 chr11 43332081 43332218 -107451335 + Tigger1 DNA MER2_type 2277 2414 -4 186 43 0 0 chr11 43332220 43332243 -107451310 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 204 40 0 0 chr11 43332242 43332267 -107451286 + (TG)n Simple_repeat Simple_repeat 2 26 0 243 254 95 16 chr11 43334395 43334458 -107449095 - L2 LINE L2 -4 3268 3201 280 363 22 0 chr11 43335287 43335422 -107448131 - MIR SINE MIR -71 191 54 39102 57 2 0 chr11 43336098 43341029 -107442524 + L1P LINE L1 2 4940 -1206 1169 190 31 27 chr11 43341171 43341429 -107442124 + AluJo SINE Alu 35 293 -19 1083 184 5 49 chr11 43341431 43341654 -107441899 - MER46A DNA MER2_type -22 214 2 534 178 0 0 chr11 43342075 43342176 -107441377 + AluSq/x SINE Alu 11 111 -201 1980 147 11 38 chr11 43342505 43342873 -107440680 - THE1B LTR MaLR -6 358 1 3062 142 8 17 chr11 43342873 43343396 -107440157 - THE1B-int LTR MaLR 0 1580 1063 1626 205 84 15 chr11 43345520 43345924 -107437629 + L1MB7 LINE L1 5560 5991 -193 1004 206 0 0 chr11 43345964 43346163 -107437390 - AluSg/x SINE Alu -9 301 103 881 241 236 21 chr11 43346377 43346763 -107436790 + MLT1H LTR MaLR 37 505 -44 567 289 25 41 chr11 43348635 43348832 -107434721 - MIR SINE MIR -6 256 63 840 297 41 19 chr11 43349811 43350080 -107433473 + LTR33 LTR ERVL 1 275 -246 215 280 53 0 chr11 43350586 43350661 -107432892 + L2 LINE L2 2891 2969 -303 411 289 31 8 chr11 43350781 43350909 -107432644 + L2 LINE L2 3140 3270 -2 231 152 0 0 chr11 43350909 43350955 -107432598 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 238 294 92 9 chr11 43351251 43351360 -107432193 - MIR SINE MIR -11 251 134 186 133 0 0 chr11 43351885 43351915 -107431638 + (TG)n Simple_repeat Simple_repeat 1 30 0 794 193 22 28 chr11 43352112 43352293 -107431260 + MLT1C LTR MaLR 1 180 -287 678 206 28 14 chr11 43352291 43352432 -107431121 + MLT1C LTR MaLR 317 459 -8 * 1303 192 3 85 chr11 43352540 43352878 -107430675 + AluJo SINE Alu 2 314 0 1197 224 46 16 chr11 43352882 43353186 -107430367 - MER4D LTR ERV1 -42 861 549 1505 171 14 45 chr11 43353218 43353510 -107430043 - MER49 LTR ERV1 -640 283 1 258 222 56 48 chr11 43354400 43354526 -107429027 - L1ME LINE L1 -222 5899 5773 22 88 0 0 chr11 43354552 43354609 -107428944 + AT_rich Low_complexity Low_complexity 1 57 0 860 128 21 0 chr11 43354795 43354936 -107428617 - MER41B LTR ERV1 0 635 492 504 302 104 9 chr11 43355078 43355300 -107428253 - MIR SINE MIR -18 244 2 21 0 0 0 chr11 43355812 43355833 -107427720 + AT_rich Low_complexity Low_complexity 1 21 0 503 247 43 21 chr11 43356369 43356555 -107426998 - L1MC5 LINE L1 -44 7917 7728 21 71 0 0 chr11 43357190 43357232 -107426321 + AT_rich Low_complexity Low_complexity 1 42 0 213 39 0 0 chr11 43358301 43358327 -107425226 + (CA)n Simple_repeat Simple_repeat 1 26 0 507 300 185 20 chr11 43358336 43358639 -107424914 - L2 LINE L2 -33 3280 2928 182 324 216 0 chr11 43360127 43360229 -107423324 - L2 LINE L2 -1 3271 3148 529 304 242 22 chr11 43360957 43361577 -107421976 + L2 LINE L2 2546 3313 0 446 341 43 46 chr11 43361996 43362243 -107421310 - MIR SINE MIR -3 259 11 372 276 113 41 chr11 43362650 43362734 -107420819 - MIR SINE MIR -6 256 180 3841 152 24 68 chr11 43362734 43363555 -107419998 - LTR1 LTR ERV1 0 785 1 372 276 113 41 chr11 43363555 43363691 -107419862 - MIR SINE MIR -82 180 20 24 106 0 0 chr11 43364692 43364786 -107418767 + AT_rich Low_complexity Low_complexity 1 94 0 22 80 0 0 chr11 43365452 43365502 -107418051 + AT_rich Low_complexity Low_complexity 1 50 0 2315 111 5 72 chr11 43365502 43365890 -107417663 + THE1B LTR MaLR 1 362 -2 567 58 0 0 chr11 43365892 43365961 -107417592 + THE1B-int LTR MaLR 1 69 -1511 443 319 14 48 chr11 43366061 43366131 -107417422 + LTR33 LTR ERVL 315 386 -135 1975 150 132 8 chr11 43366131 43366510 -107417043 + MSTA LTR MaLR 1 426 -2 443 319 14 48 chr11 43366510 43366646 -107416907 + LTR33 LTR ERVL 386 514 -7 24 0 0 0 chr11 43367901 43367925 -107415628 + AT_rich Low_complexity Low_complexity 1 24 0 266 314 44 7 chr11 43368060 43368197 -107415356 + MER103 DNA DNA 6 147 -19 27 49 0 0 chr11 43368289 43368330 -107415223 + AT_rich Low_complexity Low_complexity 1 41 0 505 229 0 0 chr11 43368333 43368429 -107415124 - U6 snRNA snRNA -11 96 1 298 345 35 30 chr11 43368473 43368676 -107414877 - L3 LINE CR1 -22 1555 1352 2599 38 0 22 chr11 43368677 43368993 -107414560 - AluY SINE Alu -2 309 1 230 366 54 21 chr11 43369125 43369218 -107414335 - MIR3 SINE MIR -31 177 82 375 288 34 34 chr11 43369481 43369627 -107413926 + MIR SINE MIR 53 198 -64 29 28 0 0 chr11 43369629 43369665 -107413888 + AT_rich Low_complexity Low_complexity 1 36 0 385 309 87 19 chr11 43371934 43372141 -107411412 - MLT1J LTR MaLR -290 221 1 480 301 21 38 chr11 43373110 43373296 -107410257 + MIR SINE MIR 5 187 -75 1432 112 35 46 chr11 43373517 43373802 -107409751 + L1MA8 LINE L1 6009 6290 -1 324 0 0 0 chr11 43374715 43374751 -107408802 + (TG)n Simple_repeat Simple_repeat 2 37 0 775 251 27 11 chr11 43375037 43375220 -107408333 + MER20 DNA MER1_type 32 217 -2 375 202 0 0 chr11 43375649 43375733 -107407820 + (TA)n Simple_repeat Simple_repeat 1 84 0 7298 36 3 21 chr11 43375733 43376851 -107406702 - L1PA5 LINE L1 -12 6142 5033 218 384 87 11 chr11 43377049 43377234 -107406319 - L2 LINE L2 -785 2529 2331 1020 196 51 28 chr11 43378065 43378376 -107405177 - MLT1B LTR MaLR 0 390 15 396 263 102 81 chr11 43378442 43378823 -107404730 + L1MEd LINE L1 732 1120 -4999 288 273 81 73 chr11 43378900 43379160 -107404393 + L1MEd LINE L1 1254 1603 -887 235 183 33 0 chr11 43379188 43379248 -107404305 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 188 111 28 0 chr11 43379356 43379392 -107404161 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 891 176 33 0 chr11 43379848 43380001 -107403552 + FRAM SINE Alu 13 170 -6 298 285 93 36 chr11 43380349 43380542 -107403011 - L2 LINE L2 -1293 2021 1818 395 367 115 14 chr11 43380617 43380722 -107402831 - L2 LINE L2 -1479 1835 1742 324 0 0 0 chr11 43380722 43380758 -107402795 + (TG)n Simple_repeat Simple_repeat 2 37 0 395 367 115 14 chr11 43380758 43381077 -107402476 - L2 LINE L2 -1572 1742 1368 23 78 0 0 chr11 43381814 43381865 -107401688 + AT_rich Low_complexity Low_complexity 1 51 0 908 119 0 0 chr11 43381865 43381983 -107401570 - FLAM_C SINE Alu -25 118 1 3957 92 8 28 chr11 43382050 43382668 -107400885 - L1MA2 LINE L1 0 6304 5699 194 182 114 125 chr11 43383957 43384045 -107399508 + L2 LINE L2 3186 3272 0 601 278 23 6 chr11 43384405 43384578 -107398975 - MIR SINE MIR 0 262 87 240 35 0 0 chr11 43384640 43384669 -107398884 + (T)n Simple_repeat Simple_repeat 1 29 0 227 267 67 33 chr11 43385188 43385278 -107398275 - MIR SINE MIR -152 110 18 3260 92 20 14 chr11 43385792 43386282 -107397271 - L1P4 LINE L1 -390 5773 5281 1379 123 5 0 chr11 43386282 43386492 -107397061 + L1PA13 LINE L1 5952 6163 0 364 277 9 27 chr11 43386561 43386673 -107396880 + L2 LINE L2 3204 3313 0 315 49 0 0 chr11 43386911 43386952 -107396601 + (TG)n Simple_repeat Simple_repeat 2 42 0 551 285 67 6 chr11 43387138 43387317 -107396236 + MIR SINE MIR 73 262 0 2474 55 0 13 chr11 43388403 43388710 -107394843 + AluY SINE Alu 1 303 -8 194 261 80 148 chr11 43389221 43389397 -107394156 - L2 LINE L2 -1 3312 3149 250 218 115 0 chr11 43389546 43389624 -107393929 - L1ME LINE L1 -266 5855 5769 434 299 22 0 chr11 43389643 43389777 -107393776 - L1PB4 LINE L1 -24 6132 5996 372 340 78 5 chr11 43389778 43389984 -107393569 - L1ME LINE L1 -341 5780 5560 223 286 8 79 chr11 43390025 43390151 -107393402 + MIR SINE MIR 71 187 -75 300 369 25 19 chr11 43391360 43391520 -107392033 + MIR SINE MIR 14 174 -88 180 284 14 40 chr11 43393081 43393155 -107390398 - MIR SINE MIR -64 198 127 663 316 103 28 chr11 43393809 43394198 -107389355 + MLT1J LTR MaLR 1 418 -93 241 342 72 0 chr11 43394216 43394327 -107389226 - MIR SINE MIR -58 204 86 201 39 0 0 chr11 43394563 43394589 -107388964 + (TCTA)n Simple_repeat Simple_repeat 3 28 0 184 175 53 0 chr11 43394593 43394650 -107388903 + GA-rich Low_complexity Low_complexity 2 61 0 466 339 27 5 chr11 43395378 43395564 -107387989 + MIR SINE MIR 14 203 -59 6760 161 204 30 chr11 43395564 43397059 -107386494 - MER52A LTR ERV1 0 1755 1 2361 319 85 30 chr11 43398550 43399428 -107384125 + L2 LINE L2 1692 2703 -610 2511 61 0 0 chr11 43399428 43399725 -107383828 - AluY SINE Alu -14 297 1 2361 319 85 30 chr11 43399725 43400327 -107383226 + L2 LINE L2 2703 3270 -43 1787 108 4 23 chr11 43400331 43400590 -107382963 + AluSx SINE Alu 59 312 0 253 208 19 0 chr11 43401045 43401098 -107382455 - MER67D LTR ERV1 -29 485 432 2538 198 62 28 chr11 43402061 43402520 -107381033 + L1MB7 LINE L1 5540 6027 -157 2177 131 0 0 chr11 43402520 43402825 -107380728 - AluSx SINE Alu -7 305 1 2538 198 62 28 chr11 43402825 43402981 -107380572 + L1MB7 LINE L1 6027 6176 -8 231 36 0 0 chr11 43402991 43403019 -107380534 + (TA)n Simple_repeat Simple_repeat 2 29 0 319 252 76 42 chr11 43403072 43403191 -107380362 - L1ME4a LINE L1 -244 5877 5755 * 349 217 48 12 chr11 43403188 43403271 -107380282 - L1MC4 LINE L1 -1340 6702 6617 2248 59 0 62 chr11 43403271 43403578 -107379975 - AluY SINE Alu -20 291 4 311 295 174 0 chr11 43404934 43405083 -107378470 - MIR SINE MIR -40 222 48 2520 81 43 124 chr11 43405143 43405626 -107377927 + L1PA11 LINE L1 5728 6171 -3 5543 51 0 1 chr11 43406013 43406701 -107376852 + L1PA5 LINE L1 5468 6154 0 1974 168 0 23 chr11 43406896 43407241 -107376312 + MER1B DNA MER1_type 1 337 0 2117 125 39 30 chr11 43407461 43407822 -107375731 - THE1B LTR MaLR 0 364 1 1396 201 48 68 chr11 43407844 43408241 -107375312 - MLT1B LTR MaLR -1 389 1 478 243 27 0 chr11 43408246 43408357 -107375196 - MLT1B-int LTR MaLR -5 1366 1253 1202 82 0 13 chr11 43408357 43408516 -107375037 - AluSg/x SINE Alu -2 308 152 3320 236 94 34 chr11 43408535 43408821 -107374732 - MLT1B-int LTR MaLR -129 1606 1339 858 176 16 52 chr11 43408821 43409014 -107374539 - L1PA15 LINE L1 -9 6156 5971 3320 236 94 34 chr11 43409014 43410190 -107373363 - MLT1B-int LTR MaLR -396 1339 1 914 209 46 10 chr11 43410190 43410386 -107373167 - MLT1B LTR MaLR 0 390 188 222 118 0 0 chr11 43410401 43410435 -107373118 + (GGGAGA)n Simple_repeat Simple_repeat 4 37 0 544 207 98 23 chr11 43410470 43410644 -107372909 - MLT1B LTR MaLR -203 187 1 459 227 35 57 chr11 43410723 43410864 -107372689 + MER5B DNA MER1_type 39 176 -2 186 271 51 17 chr11 43411102 43411161 -107372392 + MIR SINE MIR 19 79 -183 624 301 71 38 chr11 43412088 43412327 -107371226 + MIR SINE MIR 8 254 -8 749 356 67 27 chr11 43412582 43413301 -107370252 + L2 LINE L2 2565 3312 -1 443 304 164 0 chr11 43414240 43414441 -107369112 - MIR SINE MIR -18 244 11 2361 92 0 0 chr11 43414946 43415241 -107368312 + AluSx SINE Alu 3 297 -15 408 310 82 27 chr11 43415392 43415576 -107367977 + MIR SINE MIR 57 250 -12 405 39 0 0 chr11 43416083 43416134 -107367419 + (TG)n Simple_repeat Simple_repeat 2 52 0 24 0 0 0 chr11 43417491 43417515 -107366038 + AT_rich Low_complexity Low_complexity 1 24 0 260 315 55 55 chr11 43417774 43417974 -107365579 - L2 LINE L2 -22 3291 3092 384 338 38 42 chr11 43418150 43418363 -107365190 - L2 LINE L2 -263 3050 2839 25 31 0 0 chr11 43419929 43419961 -107363592 + AT_rich Low_complexity Low_complexity 1 32 0 201 286 0 0 chr11 43420128 43420170 -107363383 - L2 LINE L2 -18 3254 3213 309 250 0 0 chr11 43421305 43421397 -107362156 + (TCCA)n Simple_repeat Simple_repeat 4 95 0 243 352 93 0 chr11 43421605 43421713 -107361840 + MIR3 SINE MIR 46 163 -45 1688 227 157 18 chr11 43423159 43423656 -107359897 - MLT1E LTR MaLR -1 592 27 9212 165 91 5 chr11 43423688 43425476 -107358077 - Tigger2 DNA MER2_type -1 2717 777 877 164 7 26 chr11 43425696 43425848 -107357705 - AluJo SINE Alu -150 162 14 292 230 11 11 chr11 43425861 43425948 -107357605 - L1M LINE L1 -767 5403 5317 401 135 14 0 chr11 43426029 43426103 -107357450 + L1MA7 LINE L1 6213 6287 -4 699 138 0 0 chr11 43426219 43426335 -107357218 - L1PA15 LINE L1 -4 6161 6046 269 265 15 0 chr11 43427028 43427096 -107356457 + L2 LINE L2 3202 3270 -2 199 424 93 0 chr11 43427908 43428026 -107355527 - L2 LINE L2 -25 3247 3119 1077 239 0 5 chr11 43428036 43428258 -107355295 - MER58A DNA MER1_type -3 221 1 238 293 75 9 chr11 43428331 43428437 -107355116 + L1ME LINE L1 5374 5486 -2322 377 356 72 14 chr11 43428537 43428745 -107354808 - MIR SINE MIR -10 252 33 235 326 0 0 chr11 43428880 43428969 -107354584 + L1ME LINE L1 5722 5810 -311 399 271 82 71 chr11 43429861 43430031 -107353522 - MER5B DNA MER1_type -6 172 1 854 225 39 0 chr11 43431172 43431354 -107352199 + MER5A DNA MER1_type 1 189 0 226 370 14 0 chr11 43431358 43431431 -107352122 + L2 LINE L2 3150 3223 -49 1774 134 75 31 chr11 43431821 43432180 -107351373 - THE1C LTR MaLR 0 375 1 2208 182 28 97 chr11 43432801 43433484 -107350069 - MER92B LTR ERV1 0 636 1 272 297 99 9 chr11 43433489 43433600 -107349953 - MIR SINE MIR -58 204 84 209 194 0 0 chr11 43435571 43435607 -107347946 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1856 163 20 0 chr11 43436402 43436702 -107346851 - AluSx SINE Alu -6 306 1 274 294 70 49 chr11 43437226 43437369 -107346184 + L2 LINE L2 2824 2969 -303 672 140 9 0 chr11 43437514 43437621 -107345932 - MER41B LTR ERV1 -527 108 1 27 0 0 0 chr11 43439936 43439963 -107343590 + AT_rich Low_complexity Low_complexity 1 27 0 978 235 93 14 chr11 43439988 43440333 -107343220 - MER113 DNA MER1_type? -98 423 52 225 216 39 0 chr11 43440687 43440738 -107342815 - L2 LINE L2 0 3313 3261 661 285 44 44 chr11 43441242 43441561 -107341992 - MLT1I LTR MaLR 0 409 91 21 0 0 0 chr11 43441908 43441929 -107341624 + AT_rich Low_complexity Low_complexity 1 21 0 411 205 36 0 chr11 43442188 43442271 -107341282 - MLT1H1 LTR MaLR -7 548 463 22 0 0 0 chr11 43442918 43442940 -107340613 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr11 43442978 43443005 -107340548 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 749 114 65 24 chr11 43443005 43443120 -107340433 - L1PA10 LINE L1 -21 6147 6025 316 276 40 19 chr11 43443453 43443564 -107339989 - MLT1H LTR MaLR -376 173 12 287 336 60 13 chr11 43444846 43445020 -107338533 + MIR SINE MIR 30 211 -51 846 289 83 18 chr11 43445172 43445596 -107337957 + L3 LINE CR1 832 1343 -234 2649 16 0 19 chr11 43445614 43445928 -107337625 + AluYa5 SINE Alu 1 308 -3 1965 105 69 0 chr11 43446902 43447220 -107336333 + AluSg SINE Alu 2 338 0 264 30 0 0 chr11 43447407 43447440 -107336113 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr11 43448226 43448247 -107335306 + AT_rich Low_complexity Low_complexity 1 21 0 378 320 66 11 chr11 43448549 43448730 -107334823 - MIR SINE MIR -26 236 46 222 260 96 67 chr11 43449618 43449722 -107333831 + L2 LINE L2 3207 3313 0 977 275 74 18 chr11 43450043 43450484 -107333069 + MLT1C LTR MaLR 1 467 0 871 281 76 17 chr11 43452852 43453140 -107330413 - L2 LINE L2 -34 3279 2975 1107 206 48 75 chr11 43453143 43453516 -107330037 + MLT1A1 LTR MaLR 1 363 -2 317 345 51 35 chr11 43453517 43453714 -107329839 - L2 LINE L2 -338 2976 2777 1689 132 21 43 chr11 43454069 43454396 -107329157 - L1MA2 LINE L1 0 6304 5985 551 305 10 15 chr11 43454404 43454604 -107328949 - MIR SINE MIR -60 202 4 374 347 71 19 chr11 43455045 43455313 -107328240 + HAL1 LINE L1 824 1105 -1402 246 147 0 0 chr11 43455313 43455347 -107328206 + Alu SINE Alu 1 34 -267 844 237 6 0 chr11 43455868 43456041 -107327512 + FAM SINE Alu 1 174 -1 205 345 151 29 chr11 43456269 43456408 -107327145 - L2 LINE L2 0 3272 3117 2129 123 5 75 chr11 43458751 43459140 -107324413 + THE1B LTR MaLR 1 362 -2 11472 97 2 10 chr11 43459142 43460734 -107322819 + THE1B-int LTR MaLR 1 1580 0 2342 107 11 35 chr11 43460734 43461107 -107322446 + THE1B LTR MaLR 1 364 0 267 341 60 17 chr11 43461330 43461484 -107322069 - MIR SINE MIR -75 133 11 319 323 114 80 chr11 43463647 43464096 -107319457 + L2 LINE L2 2809 3272 0 207 329 37 0 chr11 43464540 43464622 -107318931 + MIR3 SINE MIR 99 183 -25 2202 114 0 0 chr11 43464900 43465197 -107318356 + AluSg1 SINE Alu 1 297 -12 184 319 0 0 chr11 43465197 43465244 -107318309 - MER5A DNA MER1_type -56 133 87 1539 192 21 10 chr11 43465244 43465535 -107318018 + AluJo SINE Alu 1 294 -18 960 298 72 57 chr11 43466660 43466874 -107316679 + L2 LINE L2 2837 3046 -267 531 0 0 0 chr11 43466874 43466933 -107316620 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1707 125 4 12 chr11 43466936 43467184 -107316369 - AluSx SINE Alu -30 282 37 960 298 72 57 chr11 43467184 43467435 -107316118 + L2 LINE L2 3047 3313 0 229 389 75 48 chr11 43467708 43468150 -107315403 - L2 LINE L2 -4 3268 2815 837 322 69 13 chr11 43468198 43468574 -107314979 + MLT1I LTR MaLR 1 397 -12 205 396 9 0 chr11 43468620 43468726 -107314827 - L2 LINE L2 -609 2705 2599 378 283 57 121 chr11 43468760 43469233 -107314320 - L2 LINE L2 -705 2609 2167 22 0 0 0 chr11 43469406 43469428 -107314125 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 43469450 43469471 -107314082 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 43470058 43470082 -107313471 + AT_rich Low_complexity Low_complexity 1 24 0 204 353 19 104 chr11 43470229 43470498 -107313055 - L2 LINE L2 -188 3084 2839 467 258 39 77 chr11 43470878 43471042 -107312511 + MIR3 SINE MIR 49 207 -1 221 228 89 51 chr11 43473077 43473156 -107310397 - MIR SINE MIR -81 181 100 * 511 321 53 19 chr11 43473148 43473357 -107310196 + MIR SINE MIR 13 228 -34 783 235 16 5 chr11 43473357 43473544 -107310009 + MER5A DNA MER1_type 1 189 0 364 296 145 0 chr11 43473916 43474088 -107309465 + MIR SINE MIR 66 262 0 544 295 32 16 chr11 43474094 43474284 -107309269 - MIR SINE MIR -52 210 18 208 343 0 0 chr11 43474685 43474758 -107308795 + MIR3 SINE MIR 114 186 -22 198 132 57 0 chr11 43476384 43476437 -107307116 + CT-rich Low_complexity Low_complexity 1 56 0 1973 156 3 0 chr11 43476438 43476740 -107306813 - AluSx SINE Alu -7 305 3 185 91 0 30 chr11 43476869 43476902 -107306651 + (TTTTTA)n Simple_repeat Simple_repeat 3 34 0 1111 173 4 62 chr11 43477150 43477376 -107306177 + MER46A DNA MER2_type 2 214 -22 1291 185 31 16 chr11 43477378 43477632 -107305921 - AluJo SINE Alu -20 292 35 262 231 66 44 chr11 43477967 43478058 -107305495 + MIR SINE MIR 168 260 -2 303 306 49 35 chr11 43478215 43478359 -107305194 + MIR3 SINE MIR 16 161 -47 296 307 86 18 chr11 43478851 43479014 -107304539 - L2 LINE L2 -5 3308 3135 3070 237 47 16 chr11 43479288 43480730 -107302823 - L1MB8 LINE L1 0 6178 4678 182 333 171 8 chr11 43480781 43480904 -107302649 + L2 LINE L2 3121 3263 -9 263 323 55 30 chr11 43481000 43481164 -107302389 + MIR3 SINE MIR 11 178 -30 21 71 0 0 chr11 43481318 43481360 -107302193 + AT_rich Low_complexity Low_complexity 1 42 0 10404 181 39 20 chr11 43482249 43483792 -107299761 - L1PA13 LINE L1 -3 6160 4647 279 54 0 0 chr11 43483792 43483829 -107299724 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1886 133 7 11 chr11 43483829 43484115 -107299438 - AluSq SINE Alu -28 285 1 10404 181 39 20 chr11 43484115 43484266 -107299287 - L1PA13 LINE L1 -1516 4647 4500 261 0 0 0 chr11 43484266 43484295 -107299258 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 10404 181 39 20 chr11 43484295 43485650 -107297903 - L1PA13 LINE L1 -1663 4500 3050 318 313 0 0 chr11 43486644 43486727 -107296826 - MER91 DNA MER1_type -61 129 47 246 347 69 42 chr11 43487483 43487699 -107295854 + L2 LINE L2 2665 2886 -428 1808 153 43 38 chr11 43489004 43489377 -107294176 + THE1C LTR MaLR 1 375 0 545 327 198 35 chr11 43489573 43489849 -107293704 - L2 LINE L2 -2 3311 2951 2041 80 4 0 chr11 43489849 43490113 -107293440 - AluY SINE Alu -2 309 45 545 327 198 35 chr11 43490113 43490231 -107293322 - L2 LINE L2 -362 2951 2853 1961 96 3 87 chr11 43490269 43490591 -107292962 - AluSc SINE Alu -14 295 1 301 290 31 68 chr11 43490768 43490930 -107292623 - L2 LINE L2 -2743 571 416 25 0 0 0 chr11 43492268 43492293 -107291260 + AT_rich Low_complexity Low_complexity 1 25 0 205 205 51 26 chr11 43493183 43493261 -107290292 + (TATAA)n Simple_repeat Simple_repeat 5 84 0 1779 179 19 22 chr11 43493422 43493791 -107289762 - THE1C LTR MaLR -3 372 5 345 290 88 31 chr11 43494203 43494396 -107289157 - L1ME4a LINE L1 -207 5914 5711 184 257 135 0 chr11 43496149 43496223 -107287330 + MIR SINE MIR 45 128 -80 249 289 44 11 chr11 43496317 43496407 -107287146 + LTR67 LTR ERVL 446 538 -19 422 320 102 15 chr11 43496515 43496721 -107286832 - MIR SINE MIR -2 260 37 654 223 0 0 chr11 43496776 43496897 -107286656 + FLAM_A SINE Alu 4 124 -9 21 0 0 0 chr11 43497908 43497929 -107285624 + AT_rich Low_complexity Low_complexity 1 21 0 306 73 0 0 chr11 43498431 43498472 -107285081 + (T)n Simple_repeat Simple_repeat 1 41 0 452 296 101 0 chr11 43498800 43498959 -107284594 - MIR SINE MIR -27 235 61 2280 105 0 6 chr11 43499520 43499834 -107283719 - AluSx SINE Alu 0 312 1 21 0 0 0 chr11 43499834 43499855 -107283698 + AT_rich Low_complexity Low_complexity 1 21 0 625 294 36 14 chr11 43499961 43500182 -107283371 - MIR SINE MIR -30 232 7 21 0 0 0 chr11 43500713 43500734 -107282819 + AT_rich Low_complexity Low_complexity 1 21 0 653 234 108 52 chr11 43501692 43501923 -107281630 + MIR SINE MIR 4 247 -15 189 0 0 0 chr11 43501952 43501973 -107281580 + (A)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr11 43502605 43502628 -107280925 + AT_rich Low_complexity Low_complexity 1 23 0 222 204 0 0 chr11 43502642 43502686 -107280867 + (TG)n Simple_repeat Simple_repeat 2 45 0 2347 97 0 3 chr11 43503748 43504058 -107279495 + AluSp SINE Alu 1 309 -4 1422 134 36 9 chr11 43504504 43504727 -107278826 + MER30 DNA MER1_type 1 229 -1 2148 305 76 45 chr11 43505238 43505648 -107277905 - L2 LINE L2 -461 2853 2457 1807 172 125 10 chr11 43505648 43506032 -107277521 + MSTA LTR MaLR 1 428 0 9218 140 3 63 chr11 43506034 43507712 -107275841 + MSTA-int LTR MaLR 3 1580 0 1159 193 179 35 chr11 43507712 43508086 -107275467 + MSTA LTR MaLR 1 428 0 2148 305 76 45 chr11 43508086 43508922 -107274631 - L2 LINE L2 -856 2458 1564 741 0 0 0 chr11 43509264 43509351 -107274202 + L1HS LINE L1 6069 6155 0 213 94 0 0 chr11 43509358 43509390 -107274163 + (A)n Simple_repeat Simple_repeat 1 32 0 1842 182 54 44 chr11 43510865 43511293 -107272260 + MSTB1 LTR MaLR 1 432 0 1165 174 147 26 chr11 43511700 43512025 -107271528 - MSTA LTR MaLR 0 428 43 4559 142 89 3 chr11 43512030 43512952 -107270601 - Tigger1 DNA MER2_type -180 2238 1149 26203 146 16 64 chr11 43512973 43515974 -107267579 - L1PA8 LINE L1 -1 6171 3655 2084 126 6 25 chr11 43515974 43516291 -107267262 - AluSx SINE Alu -1 311 1 26203 146 16 64 chr11 43516291 43519762 -107263791 - L1PA8 LINE L1 -2517 3655 20 306 203 0 14 chr11 43519762 43519831 -107263722 - MSTA LTR MaLR -359 69 2 679 318 104 53 chr11 43520394 43521167 -107262386 + L2 LINE L2 2457 3295 -18 860 251 58 81 chr11 43521335 43521446 -107262107 - MLT1C LTR MaLR 0 390 278 192 40 0 0 chr11 43521446 43521471 -107262082 + (TC)n Simple_repeat Simple_repeat 1 25 0 860 251 58 81 chr11 43521471 43521753 -107261800 - MLT1C LTR MaLR -112 278 6 216 300 14 29 chr11 43521776 43521846 -107261707 + L2 LINE L2 3156 3224 -48 225 143 0 0 chr11 43522054 43522089 -107261464 - L1PA13 LINE L1 -207 5956 5922 1298 146 0 0 chr11 43522091 43522297 -107261256 + L1PA13 LINE L1 5942 6147 -16 216 308 31 54 chr11 43522313 43522443 -107261110 - L2 LINE L2 -9 3304 3178 207 357 57 57 chr11 43523430 43523674 -107259879 - L2 LINE L2 -702 2612 2369 1214 236 57 38 chr11 43523703 43524072 -107259481 + MLT1B LTR MaLR 15 390 0 265 331 200 0 chr11 43524285 43524367 -107259186 - MER5A DNA MER1_type -7 182 118 2072 125 0 0 chr11 43524367 43524647 -107258906 - AluSx SINE Alu -20 292 13 265 331 200 0 chr11 43524647 43524709 -107258844 - MER5A DNA MER1_type -71 118 9 5361 147 14 12 chr11 43525189 43525799 -107257754 - L1PA15 LINE L1 -13 6152 5540 7349 195 52 73 chr11 43525799 43527592 -107255961 - MER52A LTR ERV1 0 1755 1 5361 147 14 12 chr11 43527592 43528134 -107255419 - L1PA15 LINE L1 -625 5540 5001 188 204 23 23 chr11 43528587 43528631 -107254922 - MIR SINE MIR -142 120 77 291 306 92 53 chr11 43528810 43529016 -107254537 + L1ME3A LINE L1 5392 5608 -562 1163 257 83 32 chr11 43529024 43529467 -107254086 + L1ME3A LINE L1 5695 6160 -10 356 343 28 0 chr11 43529592 43529700 -107253853 + L2 LINE L2 3133 3243 -29 1635 279 101 13 chr11 43530769 43531314 -107252239 - MLT1E LTR MaLR 0 593 1 27 0 0 0 chr11 43532787 43532814 -107250739 + AT_rich Low_complexity Low_complexity 1 27 0 297 75 0 0 chr11 43532841 43532881 -107250672 + (T)n Simple_repeat Simple_repeat 1 40 0 201 302 60 78 chr11 43533336 43533452 -107250101 - MER5A DNA MER1_type -75 114 1 3684 76 66 0 chr11 43533546 43534062 -107249491 + L1PA8 LINE L1 5566 6115 -57 354 343 0 11 chr11 43534138 43534281 -107249272 - MIR SINE MIR -55 153 14 299 258 155 10 chr11 43534458 43534555 -107248998 - L2 LINE L2 -1 3312 3202 450 350 41 68 chr11 43534708 43534965 -107248588 + L2 LINE L2 2504 2743 -571 2050 134 45 31 chr11 43534965 43535324 -107248229 - THE1B LTR MaLR 0 364 1 450 350 41 68 chr11 43535324 43535552 -107248001 + L2 LINE L2 2743 2976 -338 278 346 0 0 chr11 43535554 43535655 -107247898 + L2 LINE L2 3213 3313 0 2295 103 0 0 chr11 43535839 43536141 -107247412 + AluSg SINE Alu 1 302 -8 32 0 0 0 chr11 43536797 43536829 -107246724 + AT_rich Low_complexity Low_complexity 1 32 0 515 228 24 0 chr11 43536833 43536960 -107246593 - L1MB7 LINE L1 -20 6164 6035 * 1237 190 76 20 chr11 43536958 43537468 -107246085 - L1MB7 LINE L1 -586 5588 5060 345 262 103 24 chr11 43538058 43538184 -107245369 + MIR SINE MIR 70 205 -57 205 309 61 61 chr11 43539098 43539213 -107244340 + MIR3 SINE MIR 68 182 -26 240 290 80 57 chr11 43540423 43540599 -107242954 + MIR SINE MIR 80 259 -3 333 304 150 32 chr11 43540663 43540883 -107242670 + MIR SINE MIR 17 262 0 216 0 0 0 chr11 43541309 43541333 -107242220 + (A)n Simple_repeat Simple_repeat 1 24 0 190 217 0 43 chr11 43542683 43542775 -107240778 + (TATATG)n Simple_repeat Simple_repeat 4 91 0 2331 60 17 7 chr11 43544244 43544542 -107239011 - AluY SINE Alu -10 301 1 499 308 47 24 chr11 43544627 43544838 -107238715 - Charlie8 DNA MER1_type -2160 257 42 1143 189 27 8 chr11 43545243 43545503 -107238050 + L1P LINE L1 4924 5188 -958 272 220 240 20 chr11 43545505 43545605 -107237948 - MER34 LTR ERV1 -420 122 1 283 325 150 19 chr11 43546608 43546768 -107236785 + MIR SINE MIR 16 196 -66 276 30 0 0 chr11 43546794 43546827 -107236726 + (TG)n Simple_repeat Simple_repeat 1 33 0 856 217 11 6 chr11 43546899 43547074 -107236479 + AluJb SINE Alu 137 312 0 1116 240 35 41 chr11 43547298 43547763 -107235790 + LTR37A LTR ERV1 4 426 0 25 0 0 0 chr11 43548577 43548602 -107234951 + AT_rich Low_complexity Low_complexity 1 25 0 199 280 80 30 chr11 43548642 43548742 -107234811 + MIR3 SINE MIR 103 207 -1 2161 105 0 16 chr11 43548823 43549137 -107234416 + L1PA10 LINE L1 5807 6115 -53 529 110 0 0 chr11 43549160 43549283 -107234270 - AluY SINE Alu 0 333 211 230 123 62 49 chr11 43549306 43549336 -107234217 + A-rich Low_complexity Low_complexity 1 29 -53 407 80 0 80 chr11 43549336 43549411 -107234142 + L1PA11 LINE L1 6103 6171 -3 230 123 62 49 chr11 43549411 43549461 -107234092 + A-rich Low_complexity Low_complexity 29 82 0 314 80 13 40 chr11 43549719 43549794 -107233759 + (TA)n Simple_repeat Simple_repeat 1 73 0 430 129 24 0 chr11 43549858 43549943 -107233610 + (TA)n Simple_repeat Simple_repeat 1 87 0 216 0 0 0 chr11 43549944 43549968 -107233585 + (TG)n Simple_repeat Simple_repeat 2 25 0 934 209 188 41 chr11 43549984 43550329 -107233224 - MSTD LTR MaLR 0 396 1 410 218 115 0 chr11 43550812 43550899 -107232654 + MER81 DNA DNA 17 113 -1 213 347 41 10 chr11 43552824 43552922 -107230631 + MIR SINE MIR 40 140 -68 223 362 126 0 chr11 43553012 43553139 -107230414 - L2 LINE L2 -5 3267 3125 239 172 0 17 chr11 43553542 43553600 -107229953 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 324 0 0 0 chr11 43555795 43555831 -107227722 + (TG)n Simple_repeat Simple_repeat 2 37 0 27 62 0 0 chr11 43556192 43556240 -107227313 + AT_rich Low_complexity Low_complexity 1 48 0 12891 138 85 17 chr11 43557414 43559666 -107223887 - Tigger1 DNA MER2_type -13 2405 1 318 301 165 51 chr11 43559796 43559972 -107223581 + MIR SINE MIR 41 236 -26 21 57 0 0 chr11 43561161 43561196 -107222357 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr11 43561306 43561336 -107222217 + AT_rich Low_complexity Low_complexity 1 30 0 258 32 0 0 chr11 43562228 43562259 -107221294 + (TA)n Simple_repeat Simple_repeat 2 32 0 531 0 0 0 chr11 43563184 43563243 -107220310 + (TC)n Simple_repeat Simple_repeat 1 59 0 483 358 95 29 chr11 43563257 43563656 -107219897 - L2 LINE L2 -77 3236 2792 1190 211 105 81 chr11 43563656 43564112 -107219441 - MLT1C LTR MaLR 0 467 1 483 358 95 29 chr11 43564112 43564210 -107219343 - L2 LINE L2 -521 2792 2702 525 252 87 90 chr11 43564211 43564310 -107219243 + L1ME1 LINE L1 5902 6000 -166 6291 84 9 5 chr11 43564310 43565356 -107218197 + L1PA8A LINE L1 5078 6131 0 525 252 87 90 chr11 43565356 43565522 -107218031 + L1ME1 LINE L1 6000 6166 0 21 36 0 0 chr11 43566242 43566270 -107217283 + AT_rich Low_complexity Low_complexity 1 28 0 182 300 25 12 chr11 43566494 43566574 -107216979 + MIR SINE MIR 57 137 -125 29 0 0 62 chr11 43566586 43566634 -107216919 + AT_rich Low_complexity Low_complexity 1 45 0 400 298 170 5 chr11 43566704 43566892 -107216661 + L2 LINE L2 3094 3312 -1 1065 62 62 56 chr11 43568376 43568554 -107214999 - AluY SINE Alu -6 305 127 1808 139 55 0 chr11 43568786 43569060 -107214493 + AluSx SINE Alu 1 289 -23 26 0 0 0 chr11 43569072 43569098 -107214455 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr11 43569181 43569205 -107214348 + AT_rich Low_complexity Low_complexity 1 24 0 349 252 43 52 chr11 43569553 43569668 -107213885 - MER81 DNA DNA 0 114 1 249 256 12 37 chr11 43570027 43570109 -107213444 + MIR SINE MIR 31 110 -152 1601 211 44 26 chr11 43570130 43570319 -107213234 + MLT1A1 LTR MaLR 19 218 -147 2133 135 154 0 chr11 43570319 43570690 -107212863 + MSTA LTR MaLR 1 428 0 1601 211 44 26 chr11 43570690 43570841 -107212712 + MLT1A1 LTR MaLR 218 365 0 5265 181 21 8 chr11 43571355 43572454 -107211099 + L1MA4 LINE L1 5189 6298 -2 614 118 0 0 chr11 43572454 43572539 -107211014 + AluSg/x SINE Alu 201 285 -25 273 57 0 0 chr11 43572542 43572577 -107210976 + (TATAA)n Simple_repeat Simple_repeat 5 39 0 235 305 37 24 chr11 43572645 43572727 -107210826 - MIR SINE MIR -170 92 10 195 100 0 0 chr11 43573171 43573201 -107210352 + (ATG)n Simple_repeat Simple_repeat 3 32 0 206 272 141 54 chr11 43573357 43573449 -107210104 - MIR SINE MIR -90 118 19 1589 214 48 30 chr11 43574152 43574611 -107208942 - MLT1C LTR MaLR 0 467 1 216 363 88 0 chr11 43574842 43574955 -107208598 - MIR SINE MIR -120 142 20 27 87 0 0 chr11 43575125 43575194 -107208359 + AT_rich Low_complexity Low_complexity 1 69 0 686 309 91 58 chr11 43576017 43576642 -107206911 - L2 LINE L2 -456 2858 2213 863 228 110 45 chr11 43576822 43577201 -107206352 - L1MC/D LINE L1 -860 5437 5273 188 343 34 41 chr11 43577386 43577532 -107206021 + MIR SINE MIR 62 206 -56 274 313 0 12 chr11 43577656 43577739 -107205814 + CT-rich Low_complexity Low_complexity 5 86 0 327 146 0 0 chr11 43578398 43578453 -107205100 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 1834 164 93 49 chr11 43578539 43578771 -107204782 - MSTB LTR MaLR 0 426 167 2331 111 0 0 chr11 43578771 43579078 -107204475 - AluSx SINE Alu -5 307 1 1834 164 93 49 chr11 43579078 43579253 -107204300 - MSTB LTR MaLR -259 167 1 216 204 0 0 chr11 43579386 43579430 -107204123 + (TAA)n Simple_repeat Simple_repeat 1 44 0 349 0 0 0 chr11 43579615 43579654 -107203899 - MER4D LTR ERV1 -74 798 760 234 176 20 0 chr11 43581552 43581603 -107201950 - L1ME LINE L1 -223 5898 5847 223 372 13 0 chr11 43583266 43583344 -107200209 - L2 LINE L2 -1 3271 3193 323 287 0 0 chr11 43583385 43583472 -107200081 + MIR SINE MIR 170 256 -6 452 284 72 72 chr11 43583646 43583910 -107199643 - MER102b DNA MER1_type -9 332 69 222 335 65 53 chr11 43584123 43584293 -107199260 + MER5B DNA MER1_type 4 175 -3 224 370 62 35 chr11 43584383 43584610 -107198943 + L2 LINE L2 2859 3091 -181 373 188 134 40 chr11 43585984 43586133 -107197420 + L1MC4 LINE L1 7661 7823 -219 294 76 39 0 chr11 43586125 43586176 -107197377 - L1PA8 LINE L1 -8 6164 6095 * 26 50 0 0 chr11 43586176 43586216 -107197337 + AT_rich Low_complexity Low_complexity 1 40 0 388 343 94 52 chr11 43586759 43587394 -107196159 + L2 LINE L2 1698 2359 -955 2176 185 39 14 chr11 43587411 43587827 -107195726 + MSTB LTR MaLR 1 426 0 433 346 176 29 chr11 43588536 43589025 -107194528 - L2 LINE L2 -466 2848 2288 247 333 51 13 chr11 43589059 43589137 -107194416 - MER91A DNA MER1_type 0 196 116 24 0 0 0 chr11 43591315 43591339 -107192214 + AT_rich Low_complexity Low_complexity 1 24 0 392 366 31 31 chr11 43591388 43591645 -107191908 + L3 LINE CR1 278 534 -1043 359 330 200 0 chr11 43591664 43591849 -107191704 + L3 LINE CR1 1243 1464 -113 1294 198 119 44 chr11 43591886 43592406 -107191147 - Charlie1a DNA MER1_type -1 1454 896 384 241 12 0 chr11 43592406 43592489 -107191064 + MER1A DNA MER1_type 1 84 -443 * 3256 123 6 38 chr11 43592462 43592989 -107190564 + MER1A DNA MER1_type 17 529 0 2913 235 47 35 chr11 43592989 43593881 -107189672 - Charlie1a DNA MER1_type -552 903 1 571 257 53 23 chr11 43593885 43594056 -107189497 + MIR SINE MIR 13 188 -74 405 39 0 0 chr11 43594117 43594168 -107189385 + (TA)n Simple_repeat Simple_repeat 2 52 0 1314 177 119 29 chr11 43594288 43594598 -107188955 + MER2 DNA MER2_type 8 345 0 607 316 47 5 chr11 43594906 43595118 -107188435 + MIR SINE MIR 28 248 -14 2388 77 0 13 chr11 43595380 43595693 -107187860 + AluY SINE Alu 1 309 -2 539 22 0 45 chr11 43596673 43596762 -107186791 + (TA)n Simple_repeat Simple_repeat 2 86 0 269 321 168 8 chr11 43596955 43597086 -107186467 + MIR SINE MIR 25 176 -86 306 310 35 44 chr11 43597172 43597375 -107186178 + MIR SINE MIR 15 215 -47 1427 197 60 18 chr11 43597797 43598081 -107185472 - AluJb SINE Alu -6 296 1 357 264 16 16 chr11 43598251 43598380 -107185173 - L1MC4 LINE L1 0 8042 7914 31 0 0 0 chr11 43598404 43598435 -107185118 + AT_rich Low_complexity Low_complexity 1 31 0 308 255 66 9 chr11 43598500 43598606 -107184947 - L1MC4 LINE L1 -242 7800 7689 1113 52 0 0 chr11 43599045 43599181 -107184372 + AluSg/x SINE Alu 175 310 0 207 188 58 58 chr11 43599578 43599647 -107183906 + MIR SINE MIR 147 215 -47 1427 197 60 18 chr11 43600069 43600353 -107183200 - AluJb SINE Alu -6 296 1 357 264 16 16 chr11 43600523 43600652 -107182901 - L1MC4 LINE L1 0 8042 7914 31 0 0 0 chr11 43600676 43600707 -107182846 + AT_rich Low_complexity Low_complexity 1 31 0 2917 3 0 0 chr11 43600874 43601187 -107182366 + AluYb8 SINE Alu 1 313 -5 1088 53 0 0 chr11 43601639 43601771 -107181782 + AluSg/x SINE Alu 177 308 -4 1046 77 35 0 chr11 43602214 43602383 -107181170 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 569 157 21 14 chr11 43602384 43602524 -107181029 + CT-rich Low_complexity Low_complexity 2 142 0 638 238 74 11 chr11 43602644 43602833 -107180720 - MER3 DNA MER1_type -1 208 8 2230 113 45 5 chr11 43602833 43603335 -107180218 - L1PA12 LINE L1 -688 5480 4956 4475 110 8 9 chr11 43603335 43604005 -107179548 + L1PA12 LINE L1 5499 6168 0 320 227 147 0 chr11 43604050 43604125 -107179428 + MER5A DNA MER1_type 10 95 -94 2407 61 0 3 chr11 43605236 43605531 -107178022 - AluSc SINE Alu -15 294 1 704 225 13 20 chr11 43605566 43605717 -107177836 + MIR SINE MIR 51 200 -62 2083 121 0 32 chr11 43607738 43608053 -107175500 + AluSx SINE Alu 6 310 -2 989 231 9 14 chr11 43608078 43608294 -107175259 - MER20 DNA MER1_type -1 218 4 209 404 53 18 chr11 43608384 43608669 -107174884 - L2 LINE L2 -557 2757 2463 264 330 54 77 chr11 43608800 43609021 -107174532 - L2 LINE L2 -859 2455 2240 3066 150 21 4 chr11 43609380 43609866 -107173687 + MER1A DNA MER1_type 31 524 -5 325 248 73 46 chr11 43610909 43611018 -107172535 + MIR SINE MIR 105 216 -46 263 71 100 0 chr11 43611264 43611316 -107172237 - MLT2B3 LTR ERVL 0 554 398 2249 245 14 21 chr11 43611556 43612075 -107171478 - MLT2B3 LTR ERVL -39 515 1 22 0 0 0 chr11 43613010 43613032 -107170521 + AT_rich Low_complexity Low_complexity 1 22 0 200 217 0 0 chr11 43613280 43613326 -107170227 + T-rich Low_complexity Low_complexity 1 46 0 1838 137 128 16 chr11 43613432 43613798 -107169755 - MSTA LTR MaLR 0 428 22 1669 171 82 6 chr11 43613899 43614227 -107169326 + THE1C LTR MaLR 23 375 0 9017 189 16 11 chr11 43614239 43614303 -107169250 - MSTA-int LTR MaLR 0 1651 1589 1948 154 0 0 chr11 43614303 43614589 -107168964 + AluSx SINE Alu 13 298 -14 9017 189 16 11 chr11 43614589 43616166 -107167387 - MSTA-int LTR MaLR -62 1589 1 2108 129 135 5 chr11 43616166 43616545 -107167008 - MSTA LTR MaLR 0 428 1 441 248 113 78 chr11 43616565 43616795 -107166758 - MLT1H LTR MaLR -170 379 142 12195 167 29 43 chr11 43616880 43619323 -107164230 - Tigger1 DNA MER2_type -11 2407 1 397 138 25 0 chr11 43619490 43619570 -107163983 + CT-rich Low_complexity Low_complexity 3 84 0 211 224 61 0 chr11 43619671 43619720 -107163833 + L2 LINE L2 3023 3074 -198 7771 37 3 0 chr11 43620627 43622350 -107161203 + L1PA4 LINE L1 4426 6152 -3 506 298 0 13 chr11 43622491 43622649 -107160904 - MIR SINE MIR 0 262 107 217 284 75 0 chr11 43623215 43623282 -107160271 + MIR SINE MIR 53 124 -138 946 220 98 31 chr11 43624290 43624690 -107158863 - MLT1D LTR MaLR 0 505 1 388 278 10 0 chr11 43624743 43624840 -107158713 - MER58A DNA MER1_type -8 99 2 369 145 0 0 chr11 43626564 43626626 -107156927 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 390 248 8 66 chr11 43627303 43627424 -107156129 + MER81 DNA DNA 1 114 0 393 290 155 19 chr11 43627535 43627690 -107155863 + MER5B DNA MER1_type 3 178 0 538 257 27 59 chr11 43628325 43628475 -107155078 - MIR SINE MIR -28 234 90 1891 165 16 27 chr11 43628475 43628844 -107154709 - MLT1A1 LTR MaLR 0 365 1 538 257 27 59 chr11 43628844 43628880 -107154673 - MIR SINE MIR -172 90 54 201 293 0 0 chr11 43629238 43629296 -107154257 + GA-rich Low_complexity Low_complexity 1 58 0 236 186 0 100 chr11 43630133 43630203 -107153350 - MIR SINE MIR -75 187 125 321 26 0 0 chr11 43633790 43633828 -107149725 + (GA)n Simple_repeat Simple_repeat 2 39 0 * 324 0 0 0 chr11 43633827 43633863 -107149690 + (TG)n Simple_repeat Simple_repeat 2 37 0 211 328 40 48 chr11 43634447 43634572 -107148981 + MIR SINE MIR 21 144 -64 468 303 83 18 chr11 43634637 43634855 -107148698 - MIR SINE MIR 0 262 31 298 231 43 103 chr11 43635738 43635972 -107147581 + L1ME4a LINE L1 5798 6017 -104 5055 33 0 0 chr11 43636714 43637323 -107146230 - L1P LINE L1 -3877 2269 1661 7872 14 0 0 chr11 43637323 43638346 -107145207 + L1PA3 LINE L1 5133 6155 0 1198 242 98 105 chr11 43638671 43639373 -107144180 + L1MEc LINE L1 36 732 -5664 1021 272 6 6 chr11 43639673 43640008 -107143545 - L1 LINE L1 -3236 2910 2576 4741 142 5 17 chr11 43640009 43640777 -107142776 + L1PA16 LINE L1 5399 6157 -9 2379 47 33 10 chr11 43641395 43641695 -107141858 + AluY SINE Alu 3 309 -2 205 290 140 21 chr11 43642705 43642798 -107140755 - MIR SINE MIR -118 144 41 389 336 96 5 chr11 43643313 43643521 -107140032 + MIR SINE MIR 8 234 -28 187 317 108 25 chr11 43643520 43643640 -107139913 - MIR SINE MIR -15 247 118 * 1230 302 58 11 chr11 43644361 43644795 -107138758 + LTR16B LTR ERVL 11 464 0 245 353 29 59 chr11 43644824 43644994 -107138559 + L2 LINE L2 3146 3310 -3 183 349 107 20 chr11 43646294 43646443 -107137110 + MIR SINE MIR 79 240 -22 * 565 220 30 60 chr11 43646401 43646569 -107136984 - MIR SINE MIR 0 262 100 184 267 22 0 chr11 43646606 43646651 -107136902 + L2 LINE L2 3209 3254 -18 245 394 68 0 chr11 43646775 43646907 -107136646 - L2 LINE L2 -39 3233 3093 183 80 0 0 chr11 43647191 43647216 -107136337 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 24 32 0 0 chr11 43647704 43647735 -107135818 + AT_rich Low_complexity Low_complexity 1 31 0 1585 156 47 0 chr11 43648757 43648873 -107134680 + AluJo SINE Alu 1 110 -202 180 0 0 0 chr11 43648873 43648893 -107134660 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 1585 156 47 0 chr11 43648893 43649051 -107134502 + AluJo SINE Alu 110 288 -24 426 39 0 0 chr11 43649069 43649121 -107134432 + (CA)n Simple_repeat Simple_repeat 2 53 0 2735 131 19 19 chr11 43649224 43649698 -107133855 - L1PA16 LINE L1 0 6166 5693 545 317 48 10 chr11 43649870 43650078 -107133475 + MIR SINE MIR 44 259 -3 2472 60 3 0 chr11 43650078 43650377 -107133176 + AluY SINE Alu 1 300 -11 486 0 0 0 chr11 43650647 43650701 -107132852 + (TA)n Simple_repeat Simple_repeat 1 54 0 28 61 0 0 chr11 43651622 43651671 -107131882 + AT_rich Low_complexity Low_complexity 1 49 0 6833 31 5 1 chr11 43651684 43653156 -107130397 - L1PA4 LINE L1 -121 6034 4558 223 348 71 22 chr11 43654225 43654409 -107129144 + MIR SINE MIR 41 233 -29 216 328 153 21 chr11 43654932 43655121 -107128432 + MIR SINE MIR 13 226 -36 192 235 162 15 chr11 43656552 43656620 -107126933 - L2 LINE L2 -4 3268 3191 2193 101 7 3 chr11 43657377 43657674 -107125879 - AluSq SINE Alu -15 298 1 299 350 44 12 chr11 43657826 43657986 -107125567 + MIR SINE MIR 72 236 -26 3229 172 41 27 chr11 43658086 43658147 -107125406 + Tigger3b DNA MER2_type 12 71 -2957 4204 84 39 3 chr11 43658147 43658731 -107124822 - LTR14B LTR ERVK 0 608 4 3229 172 41 27 chr11 43658731 43659346 -107124207 + Tigger3b DNA MER2_type 71 701 -2327 704 139 0 0 chr11 43659346 43659468 -107124085 + L1MA4 LINE L1 6165 6286 -14 3229 172 41 27 chr11 43659468 43659499 -107124054 + Tigger3b DNA MER2_type 701 730 -501 425 179 0 0 chr11 43659510 43659577 -107123976 + AluS SINE Alu 1 67 -246 1516 265 103 19 chr11 43709794 43710396 -107073157 + MER20B DNA MER1_type 6 671 -112 219 88 0 0 chr11 43710396 43710430 -107073123 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1516 265 103 19 chr11 43710430 43710498 -107073055 + MER20B DNA MER1_type 671 732 -51 808 128 7 54 chr11 43710659 43710808 -107072745 - FRAM SINE Alu -13 163 22 24 85 0 0 chr11 43710845 43710904 -107072649 + AT_rich Low_complexity Low_complexity 1 59 0 331 350 26 0 chr11 43711617 43711767 -107071786 + L2 LINE L2 2853 3006 -307 338 398 27 16 chr11 43711767 43711953 -107071600 + MER91A DNA MER1_type 1 188 -8 329 234 175 19 chr11 43711987 43712141 -107071412 + L2 LINE L2 3030 3207 -106 2225 80 7 3 chr11 43712390 43712679 -107070874 + AluY SINE Alu 1 290 -21 1390 41 17 0 chr11 43712778 43712950 -107070603 + LTR17 LTR ERV1 152 326 -454 297 109 0 0 chr11 43712950 43712996 -107070557 + (A)n Simple_repeat Simple_repeat 1 46 0 455 307 73 13 chr11 43712997 43713297 -107070256 - MER31-int LTR ERV1 -2163 2773 2456 197 337 69 0 chr11 43713516 43713617 -107069936 + MIR SINE MIR 77 184 -78 2112 145 13 26 chr11 43715132 43715511 -107068042 - THE1C LTR MaLR -1 374 1 2544 51 0 13 chr11 43715516 43715827 -107067726 - AluY SINE Alu -4 307 1 708 258 40 27 chr11 43716583 43716808 -107066745 + L2 LINE L2 3085 3312 -1 180 0 0 0 chr11 43717080 43717100 -107066453 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 185 260 312 0 chr11 43717121 43717198 -107066355 - L2 LINE L2 -47 3225 3125 1094 233 78 3 chr11 43717336 43717619 -107065934 - L1ME1 LINE L1 -297 5869 5566 2084 131 39 28 chr11 43717669 43718027 -107065526 + THE1B LTR MaLR 3 364 0 303 167 0 0 chr11 43718027 43718075 -107065478 + MLT1C LTR MaLR 420 467 0 1560 258 68 29 chr11 43718075 43718775 -107064778 - L1ME1 LINE L1 -743 5403 4691 564 168 13 7 chr11 43719384 43719539 -107064014 + (TA)n Simple_repeat Simple_repeat 2 157 0 244 289 35 136 chr11 43720142 43720236 -107063317 + MLT1I LTR MaLR 1 103 -306 1642 189 14 3 chr11 43720236 43720533 -107063020 - AluJb SINE Alu -8 304 5 244 289 35 136 chr11 43720533 43720666 -107062887 + MLT1I LTR MaLR 103 205 -204 304 340 92 0 chr11 43721127 43721268 -107062285 + L2 LINE L2 2919 3072 -241 1709 137 7 33 chr11 43721291 43721591 -107061962 - THE1B LTR MaLR 0 364 73 697 234 74 27 chr11 43721866 43722123 -107061430 + L1MEc LINE L1 1645 1913 -4483 1206 275 52 39 chr11 43722141 43722363 -107061190 + L1MEc LINE L1 1868 2086 -4129 1914 127 68 3 chr11 43722363 43722655 -107060898 + AluSx SINE Alu 1 311 -1 1206 275 52 39 chr11 43722655 43723134 -107060419 + L1MEc LINE L1 2086 2547 -3668 1163 260 0 6 chr11 43723187 43723529 -107060024 + L1MEc LINE L1 2651 2990 -3225 629 201 28 35 chr11 43723535 43723679 -107059874 - MLT1A1 LTR MaLR -143 222 80 1351 245 56 49 chr11 43723680 43724200 -107059353 - MER39 LTR ERV1 0 707 1 447 121 15 0 chr11 43724200 43724266 -107059287 - MLT1A2 LTR MaLR -291 83 17 1157 150 47 0 chr11 43724472 43724665 -107058888 + MER2 DNA MER2_type 1 202 -143 22 0 0 0 chr11 43724701 43724723 -107058830 + AT_rich Low_complexity Low_complexity 1 22 0 322 292 50 17 chr11 43724971 43725091 -107058462 - MIR SINE MIR -10 252 129 31 0 0 0 chr11 43725114 43725145 -107058408 + AT_rich Low_complexity Low_complexity 1 31 0 211 263 13 0 chr11 43726939 43727015 -107056538 + (TG)n Simple_repeat Simple_repeat 1 77 0 249 299 65 9 chr11 43730969 43731076 -107052477 + MIR SINE MIR 94 206 -56 27 29 0 0 chr11 43731583 43731617 -107051936 + AT_rich Low_complexity Low_complexity 1 34 0 305 298 89 16 chr11 43731754 43731878 -107051675 + MIR SINE MIR 98 230 -32 186 43 0 0 chr11 43733570 43733593 -107049960 + (CA)n Simple_repeat Simple_repeat 2 24 0 314 275 36 58 chr11 43734343 43734481 -107049072 - MIR SINE MIR -109 153 19 261 183 167 67 chr11 43736055 43736175 -107047378 - MIR SINE MIR -1 261 130 2187 120 3 0 chr11 43736363 43736664 -107046889 + AluSq SINE Alu 1 302 -11 183 42 0 0 chr11 43736826 43736850 -107046703 + (A)n Simple_repeat Simple_repeat 1 24 0 200 128 26 26 chr11 43738055 43738094 -107045459 - MIR SINE MIR -29 233 195 273 98 0 0 chr11 43738103 43738144 -107045409 + (CA)n Simple_repeat Simple_repeat 1 41 0 204 389 11 0 chr11 43738759 43738849 -107044704 + MIR SINE MIR 158 248 -14 23 33 0 0 chr11 43738858 43738888 -107044665 + AT_rich Low_complexity Low_complexity 1 30 0 611 256 34 23 chr11 43740426 43740602 -107042951 - MIR SINE MIR -70 192 15 665 279 113 78 chr11 43740931 43741446 -107042107 + MLT1H1 LTR MaLR 18 555 0 218 250 0 0 chr11 43741676 43741728 -107041825 - L2 LINE L2 0 3313 3262 237 65 0 0 chr11 43741822 43741853 -107041700 + (CA)n Simple_repeat Simple_repeat 2 32 0 365 414 7 26 chr11 43741974 43742166 -107041387 - MIR SINE MIR -69 139 3 2355 92 3 0 chr11 43742618 43742913 -107040640 + AluSp SINE Alu 2 297 -16 1817 188 9 3 chr11 43743201 43743542 -107040011 + MER2 DNA MER2_type 2 344 0 1963 136 13 22 chr11 43743797 43744169 -107039384 + AluSq SINE Alu 1 369 0 1644 195 3 7 chr11 43744183 43744491 -107039062 - AluJb SINE Alu -2 310 4 180 0 0 0 chr11 43744610 43744630 -107038923 + (A)n Simple_repeat Simple_repeat 1 20 0 234 0 0 0 chr11 43744644 43744670 -107038883 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2725 42 0 0 chr11 43744951 43745261 -107038292 + AluY SINE Alu 1 310 -1 377 303 98 25 chr11 43745353 43745630 -107037923 + L1ME LINE L1 5484 5780 -341 1295 207 58 55 chr11 43746749 43747112 -107036441 - THE1C LTR MaLR -11 364 1 243 313 119 34 chr11 43747302 43747478 -107036075 + L2 LINE L2 2524 2714 -600 1291 194 26 47 chr11 43747478 43747615 -107035938 + L1PB4 LINE L1 4927 5065 -1086 198 0 0 0 chr11 43747615 43747637 -107035916 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1291 194 26 47 chr11 43747637 43747898 -107035655 + L1PB4 LINE L1 5065 5319 -832 4437 147 60 12 chr11 43748005 43748803 -107034750 + L1PB4 LINE L1 5319 6154 -2 848 140 15 7 chr11 43749407 43749543 -107034010 - AluSq/x SINE Alu -175 137 1 303 161 0 0 chr11 43749852 43749908 -107033645 + (TG)n Simple_repeat Simple_repeat 2 57 0 2064 122 7 0 chr11 43751088 43751375 -107032178 - AluSg SINE Alu -21 289 1 234 329 14 0 chr11 43751728 43751801 -107031752 + MIR SINE MIR 189 262 0 218 278 19 0 chr11 43752809 43752863 -107030690 - MIR SINE MIR -64 144 90 293 258 0 54 chr11 43753121 43753214 -107030339 - MER5A DNA MER1_type -98 91 4 247 115 77 19 chr11 43753407 43753459 -107030094 - MLT2A2 LTR ERVL 0 453 399 180 0 0 0 chr11 43753476 43753496 -107030057 + (CA)n Simple_repeat Simple_repeat 2 21 0 2904 77 39 0 chr11 43753496 43753884 -107029669 - MLT2A2 LTR ERVL -50 403 1 180 0 0 0 chr11 43755644 43755664 -107027889 + (CA)n Simple_repeat Simple_repeat 2 21 0 427 298 227 5 chr11 43757050 43757248 -107026305 - MIR SINE MIR 0 262 21 252 59 0 0 chr11 43757447 43757481 -107026072 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 2708 87 3 21 chr11 43757937 43758317 -107025236 - THE1C LTR MaLR 0 375 3 291 333 65 25 chr11 43758806 43759007 -107024546 + L2 LINE L2 2306 2514 -800 464 334 91 54 chr11 43759046 43759173 -107024380 + L2 LINE L2 2736 2857 -456 3055 80 11 20 chr11 43759173 43759625 -107023928 - LTR7 LTR ERV1 -2 448 1 464 334 91 54 chr11 43759625 43760014 -107023539 + L2 LINE L2 2857 3295 -18 229 313 91 80 chr11 43760214 43760489 -107023064 + MLT1H1 LTR MaLR 1 278 -252 388 281 150 0 chr11 43760495 43760650 -107022903 + MLT1H1 LTR MaLR 383 555 0 283 354 41 37 chr11 43762847 43763090 -107020463 - MLT1L LTR MaLR 0 615 372 750 137 0 0 chr11 43763233 43763350 -107020203 - THE1B LTR MaLR 0 364 248 593 106 160 0 chr11 43763349 43763443 -107020110 - THE1B LTR MaLR -266 109 1 * 202 381 7 20 chr11 43763661 43763808 -107019745 + L2 LINE L2 2626 2770 -544 188 340 66 9 chr11 43763936 43764042 -107019511 + L2 LINE L2 2765 2876 -438 1386 271 98 22 chr11 43764581 43765119 -107018434 - MLT1L LTR MaLR 0 615 37 643 268 138 42 chr11 43766085 43766324 -107017229 - MIR SINE MIR 0 262 1 507 274 119 46 chr11 43766422 43766641 -107016912 - MIR SINE MIR -10 252 18 450 313 46 35 chr11 43767419 43767678 -107015875 + MIR SINE MIR 1 262 0 272 290 154 19 chr11 43768480 43768642 -107014911 - MIR SINE MIR -73 189 6 216 307 44 18 chr11 43768647 43768761 -107014792 - L3 LINE CR1 -761 816 700 229 128 0 0 chr11 43769289 43769328 -107014225 + L1MC4 LINE L1 6663 6701 -1341 183 129 0 0 chr11 43769331 43769362 -107014191 + (TA)n Simple_repeat Simple_repeat 1 31 0 280 315 79 16 chr11 43770822 43770949 -107012604 + MIR SINE MIR 20 154 -108 223 263 150 0 chr11 43771528 43771608 -107011945 - L3 LINE CR1 -1 1576 1485 374 314 36 36 chr11 43771735 43771875 -107011678 - MIR3 SINE MIR -48 160 21 183 156 0 0 chr11 43772439 43772471 -107011082 + T-rich Low_complexity Low_complexity 1 32 0 352 291 159 21 chr11 43773116 43773305 -107010248 - MIR SINE MIR -17 245 31 232 313 36 12 chr11 43773441 43773524 -107010029 - MIR SINE MIR -133 129 45 280 261 49 70 chr11 43773844 43773986 -107009567 - MIR SINE MIR 0 262 124 222 174 0 0 chr11 43774229 43774275 -107009278 + A-rich Low_complexity Low_complexity 1 46 0 4491 170 32 13 chr11 43774825 43775673 -107007880 - MER6 DNA MER2_type -1 864 1 2554 59 0 0 chr11 43775848 43776153 -107007400 + AluY SINE Alu 1 305 -6 248 274 0 26 chr11 43776443 43776556 -107006997 - L1MC5 LINE L1 -748 7213 7104 2320 62 0 86 chr11 43776556 43776893 -107006660 + AluY SINE Alu 1 308 -3 416 274 142 9 chr11 43777653 43777891 -107005662 + MIR SINE MIR 2 246 -16 315 329 70 24 chr11 43778411 43778624 -107004929 + MIR SINE MIR 10 232 -30 294 348 43 0 chr11 43779108 43779246 -107004307 + MIR SINE MIR 48 191 -71 1799 199 0 0 chr11 43779692 43779999 -107003554 + AluJb SINE Alu 1 307 -5 429 279 23 23 chr11 43780008 43780137 -107003416 + MIR SINE MIR 37 165 -97 420 20 0 0 chr11 43780539 43780588 -107002965 + (TG)n Simple_repeat Simple_repeat 1 49 0 201 315 34 0 chr11 43781159 43781248 -107002305 - L3b LINE CR1 -385 1198 1107 260 333 71 7 chr11 43781364 43781505 -107002048 + L2 LINE L2 3160 3309 -4 372 71 0 0 chr11 43782731 43782787 -107000766 + (TG)n Simple_repeat Simple_repeat 2 57 0 228 35 0 0 chr11 43782795 43782824 -107000729 + (CA)n Simple_repeat Simple_repeat 2 30 0 190 250 0 0 chr11 43783614 43783650 -106999903 - L2 LINE L2 -2925 389 354 298 364 40 30 chr11 43784312 43784510 -106999043 + MIR SINE MIR 49 248 -14 216 271 17 17 chr11 43784775 43784834 -106998719 + L2 LINE L2 3205 3263 -9 213 344 52 39 chr11 43785728 43785882 -106997671 + L2 LINE L2 3139 3294 -19 706 250 57 10 chr11 43785929 43786121 -106997432 + MER3 DNA MER1_type 9 209 0 244 298 58 29 chr11 43786979 43787083 -106996470 - MIR SINE MIR -19 243 137 208 264 0 0 chr11 43788530 43788583 -106994970 + (TTA)n Simple_repeat Simple_repeat 1 53 0 227 290 16 0 chr11 43788583 43788645 -106994908 + MIR SINE MIR 95 157 -105 21 0 0 0 chr11 43789410 43789431 -106994122 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr11 43789570 43789616 -106993937 + AT_rich Low_complexity Low_complexity 1 46 0 2695 157 18 7 chr11 43789635 43790082 -106993471 - Tigger2 DNA MER2_type -2 2716 2265 399 147 29 0 chr11 43790063 43790131 -106993422 - Tigger2 DNA MER2_type -2648 70 1 * 465 316 122 15 chr11 43790145 43790341 -106993212 + MIR SINE MIR 1 217 -45 1153 179 0 0 chr11 43790353 43790571 -106992982 - L1P LINE L1 -909 5237 5020 821 116 0 0 chr11 43790571 43790688 -106992865 + L1PA13 LINE L1 6038 6158 -5 1248 113 80 5 chr11 43791143 43791355 -106992198 + MER30 DNA MER1_type 3 230 0 238 274 71 12 chr11 43792601 43792685 -106990868 - MIR SINE MIR 0 262 174 359 306 70 13 chr11 43793086 43793243 -106990310 - MIR SINE MIR -79 183 18 988 279 50 9 chr11 43794371 43794711 -106988842 - MLT1C LTR MaLR -61 406 53 203 158 79 0 chr11 43795776 43795814 -106987739 + L2 LINE L2 3265 3305 -8 370 215 45 79 chr11 43795845 43796022 -106987531 - L1MA9 LINE L1 -185 6106 5936 22 0 0 0 chr11 43796294 43796316 -106987237 + AT_rich Low_complexity Low_complexity 1 22 0 556 334 32 99 chr11 43796368 43796903 -106986650 - L2 LINE L2 0 3272 2779 209 108 0 27 chr11 43797029 43797066 -106986487 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr11 43797198 43797226 -106986327 + AT_rich Low_complexity Low_complexity 1 28 0 224 326 23 0 chr11 43797983 43798069 -106985484 + MIR SINE MIR 103 190 -72 986 168 74 5 chr11 43800771 43800973 -106982580 + L1MD3 LINE L1 7766 7981 -14 197 105 0 26 chr11 43801173 43801211 -106982342 + (CATA)n Simple_repeat Simple_repeat 2 38 0 25 51 0 0 chr11 43801256 43801295 -106982258 + AT_rich Low_complexity Low_complexity 1 39 0 515 272 64 79 chr11 43801606 43802165 -106981388 - L1MEc LINE L1 -3097 3118 2568 475 226 35 0 chr11 43802691 43802806 -106980747 - MER31-int LTR ERV1 -3789 1147 1029 425 252 126 0 chr11 43803037 43803156 -106980397 - MER92B LTR ERV1 -502 134 1 623 323 0 0 chr11 43803156 43803323 -106980230 - MIR SINE MIR -88 174 8 297 0 0 0 chr11 43803430 43803463 -106980090 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 180 216 0 0 chr11 43803568 43803619 -106979934 + (TA)n Simple_repeat Simple_repeat 1 51 0 1487 201 24 30 chr11 43804065 43804266 -106979287 - MER2 DNA MER2_type -14 331 131 3899 191 41 24 chr11 43804266 43804889 -106978664 + MER6 DNA MER2_type 1 644 -221 1733 181 3 13 chr11 43804889 43805188 -106978365 - AluJb SINE Alu -10 302 7 3899 191 41 24 chr11 43805188 43805414 -106978139 + MER6 DNA MER2_type 644 865 0 1487 201 24 30 chr11 43805414 43805545 -106978008 - MER2 DNA MER2_type -214 131 1 285 29 0 0 chr11 43805813 43805847 -106977706 + (A)n Simple_repeat Simple_repeat 1 34 0 237 301 130 24 chr11 43806163 43806286 -106977267 - MIR SINE MIR -49 213 78 670 142 71 61 chr11 43807502 43807699 -106975854 - THE1B LTR MaLR -165 199 1 234 310 28 48 chr11 43807712 43807857 -106975696 + L2 LINE L2 3112 3253 -60 1613 183 0 53 chr11 43807891 43808214 -106975339 + AluJb SINE Alu 1 306 -6 2254 281 47 23 chr11 43808254 43808965 -106974588 + L1MEc LINE L1 35 772 -5624 1526 98 5 49 chr11 43808965 43809189 -106974364 + AluSg/x SINE Alu 90 303 -9 2254 281 47 23 chr11 43809189 43809349 -106974204 + L1MEc LINE L1 772 927 -5469 265 305 69 5 chr11 43809900 43810103 -106973450 - L1MEc LINE L1 -3821 2394 2179 3452 172 43 3 chr11 43810425 43811070 -106972483 + LTR51 LTR ERV1 1 671 0 307 276 51 10 chr11 43811271 43811369 -106972184 - L2 LINE L2 0 3313 3212 253 321 132 26 chr11 43811369 43811787 -106971766 - L1MEc LINE L1 -4676 1720 1259 263 179 15 0 chr11 43811851 43811918 -106971635 + (TA)n Simple_repeat Simple_repeat 2 69 0 433 309 70 62 chr11 43812093 43812177 -106971376 - L1MEc LINE L1 -5191 1014 932 2068 138 0 3 chr11 43812177 43812482 -106971071 - AluSg SINE Alu -6 304 1 433 309 70 62 chr11 43812482 43812879 -106970674 - L1MEc LINE L1 -5273 932 529 201 108 0 0 chr11 43812979 43813016 -106970537 + (CAGA)n Simple_repeat Simple_repeat 1 37 0 207 139 0 0 chr11 43813830 43813866 -106969687 + (TG)n Simple_repeat Simple_repeat 2 37 0 235 317 0 0 chr11 43814806 43814907 -106968646 + A-rich Low_complexity Low_complexity 1 101 0 277 297 40 10 chr11 43816520 43816621 -106966932 + L2 LINE L2 3168 3271 -1 259 191 60 0 chr11 43816918 43817002 -106966551 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 203 295 32 0 chr11 43817048 43817143 -106966410 + (TA)n Simple_repeat Simple_repeat 2 99 0 26 30 0 0 chr11 43817794 43817827 -106965726 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr11 43817939 43817968 -106965585 + AT_rich Low_complexity Low_complexity 1 29 0 185 321 86 12 chr11 43817973 43818054 -106965499 + L2 LINE L2 2926 3012 -260 30 27 0 0 chr11 43818570 43818607 -106964946 + AT_rich Low_complexity Low_complexity 1 37 0 1649 178 31 7 chr11 43818688 43818975 -106964578 - AluJb SINE Alu -18 294 1 324 302 77 32 chr11 43818999 43819403 -106964150 - L1MC5 LINE L1 -204 7757 7336 263 308 8 68 chr11 43821383 43821500 -106962053 + MIR SINE MIR 82 191 -71 2238 75 0 31 chr11 43821655 43821974 -106961579 - AluY SINE Alu -2 309 1 201 39 0 0 chr11 43822756 43822782 -106960771 + (TTTTTA)n Simple_repeat Simple_repeat 4 29 0 1406 191 16 40 chr11 43822987 43823127 -106960426 + AluJo SINE Alu 1 143 -169 2295 107 11 8 chr11 43823127 43823481 -106960072 - THE1A LTR MaLR 0 355 1 1406 191 16 40 chr11 43823481 43823644 -106959909 + AluJo SINE Alu 143 297 -15 505 330 47 43 chr11 43823883 43824162 -106959391 + L2 LINE L2 2583 2862 -452 1235 108 0 47 chr11 43824268 43824481 -106959072 - L1PA13 LINE L1 0 6163 5961 217 154 0 58 chr11 43826164 43826216 -106957337 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 198 305 16 78 chr11 43826386 43826514 -106957039 - MER5A DNA MER1_type -23 166 47 184 337 59 40 chr11 43826793 43826894 -106956659 + MIR SINE MIR 48 150 -112 1746 159 98 17 chr11 43826900 43827259 -106956294 - MLT1B LTR MaLR -2 388 1 32 0 0 0 chr11 43827314 43827346 -106956207 + AT_rich Low_complexity Low_complexity 1 32 0 624 27 0 0 chr11 43827575 43827649 -106955904 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 506 297 74 39 chr11 43827774 43828003 -106955550 - MIR SINE MIR -14 248 12 3258 152 10 0 chr11 43828292 43828813 -106954740 - MER1A DNA MER1_type -1 526 1 2145 98 11 0 chr11 43829258 43829544 -106954009 + AluSx SINE Alu 7 295 -17 1281 206 157 38 chr11 43830793 43831244 -106952309 + MLT1D LTR MaLR 1 505 0 21 0 0 0 chr11 43831863 43831884 -106951669 + AT_rich Low_complexity Low_complexity 1 21 0 337 354 39 43 chr11 43832995 43833269 -106950284 + L2 LINE L2 2771 3058 -214 1689 173 0 3 chr11 43833619 43833928 -106949625 - AluSx SINE Alu 0 308 1 426 339 60 6 chr11 43834003 43834186 -106949367 + MIR SINE MIR 13 205 -57 5297 195 59 7 chr11 43834318 43836035 -106947518 - L1MC1 LINE L1 -18 6315 4526 198 313 52 21 chr11 43836533 43836629 -106946924 - MIR SINE MIR -78 184 86 180 152 0 0 chr11 43836671 43836704 -106946849 + CT-rich Low_complexity Low_complexity 2 34 0 286 219 14 14 chr11 43836787 43836860 -106946693 + MER103 DNA DNA 31 103 -63 285 254 28 0 chr11 43838048 43838119 -106945434 + MER116 DNA Mariner 3 75 -5 13667 230 35 23 chr11 43838584 43842541 -106941012 - L1PA12 LINE L1 -744 6053 2083 414 57 0 0 chr11 43842556 43842609 -106940944 + (TG)n Simple_repeat Simple_repeat 2 54 0 1371 207 0 26 chr11 43842614 43842884 -106940669 - AluJo SINE Alu -49 263 1 1394 198 9 27 chr11 43842884 43843218 -106940335 - L1PA12 LINE L1 -4711 2076 1749 2521 74 0 0 chr11 43843292 43843602 -106939951 - AluY SINE Alu 0 311 2 1839 147 76 34 chr11 43843633 43844013 -106939540 + Charlie1b DNA MER1_type 1 396 -127 1973 239 28 4 chr11 43844024 43844332 -106939221 - L1PA12 LINE L1 -5026 1761 1437 230 71 0 24 chr11 43844332 43844374 -106939179 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1973 239 28 4 chr11 43844374 43844533 -106939020 - L1PA12 LINE L1 -5350 1437 1283 * 2139 322 54 26 chr11 43844503 43845280 -106938273 - L1PA12 LINE L1 -5988 799 1 24 0 0 0 chr11 43845428 43845452 -106938101 + AT_rich Low_complexity Low_complexity 1 24 0 255 251 22 0 chr11 43845879 43845946 -106937607 + MIR SINE MIR 84 140 -68 409 283 35 0 chr11 43847060 43847205 -106936348 + MER103 DNA DNA 17 166 0 384 385 27 23 chr11 43848090 43848350 -106935203 - L2 LINE L2 -474 2840 2580 2431 50 20 0 chr11 43849313 43849610 -106933943 + AluY SINE Alu 1 303 -8 234 0 0 0 chr11 43850440 43850466 -106933087 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1079 226 109 44 chr11 43850609 43851039 -106932514 + MLT1C LTR MaLR 6 463 -4 1970 142 0 0 chr11 43851089 43851398 -106932155 - AluSx SINE Alu 0 311 3 543 334 28 14 chr11 43852996 43853221 -106930332 - MIR SINE MIR 0 262 35 307 319 31 62 chr11 43853605 43853765 -106929788 + MIR SINE MIR 57 211 -51 201 74 0 0 chr11 43854866 43854893 -106928660 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 6012 108 9 0 chr11 43855117 43856429 -106927124 - L1PA8 LINE L1 -2 6170 4856 1459 207 33 37 chr11 43856489 43856789 -106926764 + AluJo SINE Alu 3 301 -11 227 333 175 0 chr11 43857872 43857992 -106925561 - L2 LINE L2 -3 3269 3129 237 239 11 120 chr11 43858106 43858198 -106925355 - L2 LINE L2 0 3272 3191 218 298 58 84 chr11 43858196 43858387 -106925166 - L2 LINE L2 -36 3277 3092 * 315 0 0 0 chr11 43858936 43858971 -106924582 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1230 201 7 71 chr11 43858973 43859282 -106924271 - AluJo SINE Alu -23 289 1 462 278 139 6 chr11 43861775 43861948 -106921605 - L1M4 LINE L1 -1501 4645 4450 906 163 42 12 chr11 43861955 43862121 -106921432 - MER6B DNA MER2_type -39 171 1 922 262 84 17 chr11 43862179 43862653 -106920900 - L1M4 LINE L1 -1736 4410 3905 1453 253 67 34 chr11 43862656 43863553 -106920000 - L1ME LINE L1 -4135 1945 851 2172 116 3 3 chr11 43863553 43863854 -106919699 - AluSx SINE Alu -11 301 1 1453 253 67 34 chr11 43863854 43863988 -106919565 - L1ME LINE L1 -5229 851 723 473 323 61 50 chr11 43863984 43864800 -106918753 - L1ME LINE L1 -5235 835 12 * 1042 300 70 43 chr11 43865533 43865926 -106917627 - LTR16A LTR ERVL 0 457 49 2235 151 9 86 chr11 43865926 43866329 -106917224 - MSTC LTR MaLR 0 428 64 1983 143 3 3 chr11 43866329 43866630 -106916923 + AluJb SINE Alu 1 301 -11 2235 151 9 86 chr11 43866630 43866690 -106916863 - MSTC LTR MaLR -364 64 1 1042 300 70 43 chr11 43866690 43866736 -106916817 - LTR16A LTR ERVL -408 49 6 180 200 40 60 chr11 43866758 43866808 -106916745 + MIR SINE MIR 123 171 -91 304 93 67 0 chr11 43866830 43866905 -106916648 + (TA)n Simple_repeat Simple_repeat 2 81 0 204 196 59 0 chr11 43867196 43867247 -106916306 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 243 125 0 0 chr11 43867453 43867493 -106916060 + (GA)n Simple_repeat Simple_repeat 2 41 0 231 250 0 0 chr11 43867805 43867865 -106915688 + (TG)n Simple_repeat Simple_repeat 1 60 0 434 304 83 6 chr11 43868231 43868399 -106915154 + MLT1K LTR MaLR 1 181 -407 543 335 60 39 chr11 43868426 43868707 -106914846 + MLT1K LTR MaLR 238 524 -64 303 264 34 91 chr11 43868955 43869163 -106914390 - L1ME LINE L1 -331 5790 5595 2422 181 39 8 chr11 43869165 43869684 -106913869 - L1MA9 LINE L1 -2 6310 5776 21 0 0 0 chr11 43869691 43869712 -106913841 + AT_rich Low_complexity Low_complexity 1 21 0 258 0 0 67 chr11 43869729 43869774 -106913779 + (TA)n Simple_repeat Simple_repeat 2 43 0 430 176 0 0 chr11 43869790 43869869 -106913684 - L1M4 LINE L1 -393 5781 5703 223 343 101 26 chr11 43870239 43870507 -106913046 - L2 LINE L2 -405 2909 2622 310 303 141 40 chr11 43871180 43871378 -106912175 + MIR SINE MIR 10 227 -35 279 114 0 0 chr11 43871729 43871773 -106911780 + (CA)n Simple_repeat Simple_repeat 2 45 0 2550 107 3 8 chr11 43872204 43872570 -106910983 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 43872971 43872992 -106910561 + AT_rich Low_complexity Low_complexity 1 21 0 333 241 80 44 chr11 43873386 43873523 -106910030 - MER112 DNA MER1_type -102 158 17 247 136 0 0 chr11 43873615 43873659 -106909894 - L1PA14 LINE L1 -4 6157 6114 1879 175 46 36 chr11 43873659 43874202 -106909351 - MLT2A2 LTR ERVL 0 554 1 956 92 21 0 chr11 43874202 43874344 -106909209 - L1PA14 LINE L1 -43 6118 5974 356 40 20 0 chr11 43874465 43874515 -106909038 + (TTG)n Simple_repeat Simple_repeat 1 51 0 333 0 0 0 chr11 43874571 43874608 -106908945 + (CA)n Simple_repeat Simple_repeat 2 38 0 256 258 165 0 chr11 43875574 43875671 -106907882 - MIR SINE MIR -10 252 140 2196 101 3 16 chr11 43875735 43876042 -106907511 - AluSp SINE Alu -10 303 1 273 372 0 11 chr11 43876092 43876186 -106907367 - MER5A DNA MER1_type -93 96 4 26 0 0 0 chr11 43876301 43876327 -106907226 + AT_rich Low_complexity Low_complexity 1 26 0 313 279 68 72 chr11 43877285 43877550 -106906003 + MLT1I LTR MaLR 145 408 -1 213 349 70 59 chr11 43877696 43877968 -106905585 + L3 LINE CR1 1179 1453 -124 2211 117 0 0 chr11 43878021 43878319 -106905234 + AluSq SINE Alu 1 298 -15 362 284 114 62 chr11 43878410 43878629 -106904924 + MIR SINE MIR 32 262 0 1139 221 89 126 chr11 43878882 43879565 -106903988 + MLT1E2 LTR MaLR 1 626 0 1644 172 10 38 chr11 43880335 43880659 -106902894 + AluJb SINE Alu 1 316 0 550 317 65 30 chr11 43881905 43882400 -106901153 - L1ME4a LINE L1 -55 6066 5555 180 158 0 0 chr11 43882540 43882578 -106900975 + (TAA)n Simple_repeat Simple_repeat 2 39 0 259 324 52 69 chr11 43882856 43883029 -106900524 - MIR SINE MIR -61 201 32 213 65 0 0 chr11 43883892 43883923 -106899630 + (T)n Simple_repeat Simple_repeat 1 31 0 216 222 44 56 chr11 43884314 43884404 -106899149 - MIR SINE MIR -13 249 161 2029 284 11 13 chr11 43884419 43884954 -106898599 - MLT1F LTR MaLR -6 536 3 1826 88 4 0 chr11 43885375 43885625 -106897928 - L1PA6 LINE L1 0 6154 5904 189 250 0 0 chr11 43885809 43885849 -106897704 + L2 LINE L2 3264 3303 -10 291 274 0 40 chr11 43886922 43887046 -106896507 + MLT1L LTR MaLR 397 515 -100 289 330 228 14 chr11 43887581 43887796 -106895757 - MIR SINE MIR 0 262 2 25 31 0 0 chr11 43889344 43889376 -106894177 + AT_rich Low_complexity Low_complexity 1 32 0 617 317 20 45 chr11 43889544 43889814 -106893739 - MIR SINE MIR 0 262 1 344 364 80 34 chr11 43889876 43890115 -106893438 - L3 LINE CR1 -428 1149 900 2061 111 4 0 chr11 43891105 43891384 -106892169 + AluSp SINE Alu 24 303 -10 443 301 86 34 chr11 43893485 43893694 -106889859 + L2 LINE L2 3094 3313 0 475 202 0 0 chr11 43894041 43894140 -106889413 + MER96B DNA MER1_type? 14 112 -305 637 84 0 0 chr11 43894163 43894246 -106889307 - LTR5 LTR ERVK -91 878 796 203 56 56 0 chr11 43894246 43894282 -106889271 + T-rich Low_complexity Low_complexity 2 39 0 6669 60 4 43 chr11 43894282 43895260 -106888293 - SVA Other Other -17 1369 430 1640 97 13 74 chr11 43895667 43896129 -106887424 - SVA Other Other -520 866 433 5291 74 36 54 chr11 43896233 43897060 -106886493 - SVA Other Other -518 868 57 381 22 0 0 chr11 43897060 43897106 -106886447 + (GGGAGA)n Simple_repeat Simple_repeat 1 46 0 649 169 7 14 chr11 43897107 43897249 -106886304 + MER96B DNA MER1_type? 98 238 -179 392 206 14 138 chr11 43898166 43898384 -106885169 + L1MC4 LINE L1 7836 8026 -16 22 0 0 0 chr11 43898642 43898664 -106884889 + AT_rich Low_complexity Low_complexity 1 22 0 323 361 78 10 chr11 43900165 43900370 -106883183 - L3 LINE CR1 -126 1451 1233 2981 178 26 0 chr11 43900969 43901541 -106882012 + L1PB4 LINE L1 5569 6155 -1 298 297 27 118 chr11 43901791 43902087 -106881466 + MLT1J LTR MaLR 127 395 -116 22 35 0 0 chr11 43902251 43902280 -106881273 + AT_rich Low_complexity Low_complexity 1 29 0 2048 244 2 7 chr11 43902724 43903268 -106880285 + L1 LINE L1 3576 4116 -2030 2053 127 0 0 chr11 43903586 43903870 -106879683 + AluSx SINE Alu 16 299 -13 217 222 0 0 chr11 43906211 43906256 -106877297 + (TG)n Simple_repeat Simple_repeat 2 46 0 1993 123 3 3 chr11 43906289 43906621 -106876932 + AluSq SINE Alu 1 332 0 203 162 0 0 chr11 43906930 43906967 -106876586 + A-rich Low_complexity Low_complexity 3 39 0 234 314 50 29 chr11 43906982 43907221 -106876332 - L1ME4a LINE L1 -169 5952 5709 40 37 0 0 chr11 43907613 43907667 -106875886 + AT_rich Low_complexity Low_complexity 1 54 0 549 311 58 40 chr11 43907705 43908033 -106875520 - MLT1I LTR MaLR -7 402 69 24 32 0 0 chr11 43909118 43909149 -106874404 + AT_rich Low_complexity Low_complexity 1 31 0 1223 207 29 88 chr11 43910514 43910925 -106872628 - MLT1B LTR MaLR 0 390 4 1413 207 44 26 chr11 43911140 43911662 -106871891 + MLT1E1 LTR MaLR 22 611 -43 311 275 180 24 chr11 43912096 43912263 -106871290 + L2 LINE L2 3118 3310 -3 480 93 67 0 chr11 43912785 43912834 -106870719 + MADE1 DNA Mariner 1 58 -22 203 61 30 0 chr11 43912834 43912867 -106870686 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 480 93 67 0 chr11 43912867 43912892 -106870661 + MADE1 DNA Mariner 58 80 0 335 181 0 24 chr11 43913447 43913530 -106870023 + CT-rich Low_complexity Low_complexity 2 82 0 2230 90 0 0 chr11 43914169 43914496 -106869057 + AluY SINE Alu 4 330 0 250 354 41 48 chr11 43914767 43914914 -106868639 + L2 LINE L2 3123 3268 -4 406 143 22 0 chr11 43915022 43915113 -106868440 + (TGGA)n Simple_repeat Simple_repeat 4 96 0 200 363 48 0 chr11 43915810 43915956 -106867597 - L2 LINE L2 -1283 2031 1879 382 174 0 0 chr11 43915978 43916047 -106867506 + L1PB4 LINE L1 4490 4558 -1588 866 110 0 0 chr11 43916047 43916165 -106867388 - AluY SINE Alu -3 308 191 3883 197 35 15 chr11 43916165 43917746 -106865807 + L1PB4 LINE L1 4549 6153 -3 2427 66 0 10 chr11 43917757 43918062 -106865491 + AluY SINE Alu 1 302 -9 1867 163 3 0 chr11 43918314 43918603 -106864950 + AluSx SINE Alu 6 295 -17 486 231 142 0 chr11 43918647 43918781 -106864772 + MIR SINE MIR 110 262 0 265 295 0 0 chr11 43919327 43919388 -106864165 + MIR SINE MIR 61 121 -87 1669 201 0 19 chr11 43920174 43920483 -106863070 + AluJb SINE Alu 1 303 -9 27 49 0 0 chr11 43920773 43920814 -106862739 + AT_rich Low_complexity Low_complexity 1 41 0 412 379 57 25 chr11 43921089 43921567 -106861986 + LTR67 LTR ERVL 50 542 -15 1321 199 23 15 chr11 43921766 43922027 -106861526 + Tigger7 DNA MER2_type 1 263 -2224 346 217 120 0 chr11 43922020 43922112 -106861441 + Tigger7 DNA MER2_type 2384 2486 -1 * 443 305 39 13 chr11 43923953 43924107 -106859446 - MIR SINE MIR -102 160 3 258 188 72 14 chr11 43924671 43924740 -106858813 + (CAGAGA)n Simple_repeat Simple_repeat 1 73 0 34225 100 11 14 chr11 43924858 43928670 -106854883 - L1PA6 LINE L1 -11 6143 2352 189 74 0 0 chr11 43928670 43928697 -106854856 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 34225 100 11 14 chr11 43928697 43931034 -106852519 - L1PA6 LINE L1 -3802 2352 11 1569 215 3 3 chr11 43931300 43931598 -106851955 - AluJb SINE Alu -10 302 5 488 305 80 44 chr11 43931665 43931914 -106851639 + MIR SINE MIR 5 262 0 308 374 55 0 chr11 43932592 43932755 -106850798 - MIR3 SINE MIR 0 208 37 303 332 107 38 chr11 43933454 43933800 -106849753 + L2 LINE L2 2944 3313 0 985 252 87 50 chr11 43934249 43934531 -106849022 - MLT1D LTR MaLR -2 503 196 2106 134 0 0 chr11 43934531 43934830 -106848723 - AluSx SINE Alu -13 299 1 985 252 87 50 chr11 43934830 43935007 -106848546 - MLT1D LTR MaLR -309 196 27 269 280 101 36 chr11 43935035 43935203 -106848350 - L3 LINE CR1 -21 1556 1378 278 301 36 0 chr11 43935800 43935883 -106847670 - MIR SINE MIR -66 196 111 262 308 151 7 chr11 43935916 43936062 -106847491 - L3 LINE CR1 -257 1320 1154 1409 291 115 25 chr11 43937577 43938178 -106845375 + L2 LINE L2 2240 2894 -420 1123 67 11 22 chr11 43938685 43938864 -106844689 - AluYb8 SINE Alu -141 177 1 284 207 0 24 chr11 43938864 43938946 -106844607 + L1MD2 LINE L1 6279 6358 -1 207 325 37 55 chr11 43939566 43939672 -106843881 + MIR SINE MIR 20 122 -86 * 689 246 101 30 chr11 43939610 43939878 -106843675 + L2 LINE L2 661 947 -2367 788 265 49 16 chr11 43939957 43940327 -106843226 - L1MEc LINE L1 -5219 1177 796 381 266 28 52 chr11 43940336 43940625 -106842928 - L1M4 LINE L1 -1130 5016 4735 2244 126 0 0 chr11 43940658 43940968 -106842585 - AluSx SINE Alu -2 310 1 21 0 0 0 chr11 43941097 43941118 -106842435 + AT_rich Low_complexity Low_complexity 1 21 0 299 91 18 18 chr11 43942086 43942141 -106841412 - LTR49-int LTR ERV1 -2128 4203 4149 585 174 0 58 chr11 43942149 43942270 -106841283 + FLAM_C SINE Alu 12 125 -18 464 146 61 0 chr11 43942945 43943027 -106840526 - LTR49-int LTR ERV1 -6244 87 1 722 160 57 36 chr11 43943029 43943233 -106840320 - LTR49 LTR ERV1 0 595 424 790 227 111 43 chr11 43943244 43943616 -106839937 - LTR48 LTR ERV1 -263 359 1 2477 178 41 114 chr11 43943723 43943878 -106839675 - LTR1-int LTR ERV1 -2044 4287 4122 1630 166 3 53 chr11 43943878 43944180 -106839373 + AluJo SINE Alu 12 298 -14 2477 178 41 114 chr11 43944180 43944384 -106839169 - LTR1-int LTR ERV1 -2209 4122 3905 1577 189 36 26 chr11 43944384 43944690 -106838863 + AluJb SINE Alu 1 309 -3 2477 178 41 114 chr11 43944690 43945337 -106838216 - LTR1-int LTR ERV1 -2426 3905 3354 988 179 0 0 chr11 43945349 43945528 -106838025 + HUERS-P2 LTR ERV1 1740 1918 -1170 14683 178 44 11 chr11 43945534 43948467 -106835086 - LTR1-int LTR ERV1 0 3088 1 3702 147 59 80 chr11 43948467 43949269 -106834284 - LTR1 LTR ERV1 0 785 1 2933 187 39 48 chr11 43949272 43950020 -106833533 - LTR49-int LTR ERV1 -4219 2112 1372 1646 186 99 49 chr11 43950163 43950314 -106833239 - LTR49-int LTR ERV1 -3267 1613 1471 346 206 44 0 chr11 43950314 43950382 -106833171 - tRNA-Glu-GAG tRNA tRNA -3 72 2 1646 186 99 49 chr11 43950382 43950761 -106832792 - LTR49-int LTR ERV1 -3409 1471 844 5564 125 189 89 chr11 43950818 43952359 -106831194 + pTR5 LTR ERV1 743 2438 0 868 315 9 6 chr11 43953497 43953830 -106829723 - L1MEc LINE L1 -6029 367 34 463 266 16 23 chr11 43953870 43953998 -106829555 + L2 LINE L2 3185 3311 -2 2850 204 62 30 chr11 43954277 43955024 -106828529 - MER21B LTR ERV1 -54 809 39 27 0 0 0 chr11 43955314 43955341 -106828212 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr11 43955524 43955545 -106828008 + AT_rich Low_complexity Low_complexity 1 21 0 404 365 101 50 chr11 43955907 43956343 -106827210 - L2 LINE L2 -3 3310 2853 188 403 42 51 chr11 43956735 43956951 -106826602 + L2 LINE L2 2759 2972 -342 2321 102 0 0 chr11 43956991 43957296 -106826257 - AluSg SINE Alu -5 305 1 187 377 38 0 chr11 43957428 43957534 -106826019 + L2 LINE L2 3196 3305 -8 1414 203 3 7 chr11 43958495 43958800 -106824753 + L1MC3 LINE L1 7278 7581 -204 2153 126 0 0 chr11 43958808 43959102 -106824451 + AluSg SINE Alu 1 294 -16 919 62 0 0 chr11 43959104 43959217 -106824336 + AluY SINE Alu 175 287 -24 207 0 0 0 chr11 43959231 43959254 -106824299 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 763 176 15 73 chr11 43959271 43959475 -106824078 + L1MC3 LINE L1 7586 7777 -8 330 234 19 39 chr11 43959484 43959638 -106823915 - MER53 DNA DNA -16 173 23 2393 124 63 14 chr11 43959988 43960414 -106823139 - MER4C LTR ERV1 -18 447 1 2010 87 8 4 chr11 43960574 43960839 -106822714 + AluY SINE Alu 32 297 -14 4180 128 34 52 chr11 43960902 43961260 -106822293 - MER4E LTR ERV1 0 779 416 216 0 0 0 chr11 43961260 43961284 -106822269 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 2204 70 0 0 chr11 43961289 43961575 -106821978 - L1PA5 LINE L1 0 6154 5869 4180 128 34 52 chr11 43961575 43962001 -106821552 - MER4E LTR ERV1 -367 412 3 239 293 281 0 chr11 43962002 43962084 -106821469 - MER5A DNA MER1_type -18 171 67 544 170 35 23 chr11 43962480 43962651 -106820902 + GA-rich Low_complexity Low_complexity 3 175 0 392 243 10 0 chr11 43963537 43963640 -106819913 - L1ME3A LINE L1 0 6170 6067 1559 270 109 13 chr11 43963765 43964536 -106819017 - L1ME3A LINE L1 -114 6056 5215 4498 51 20 16 chr11 43964555 43965587 -106817966 + MER11A LTR ERVK 1 1266 0 782 246 45 94 chr11 43965639 43965792 -106817761 - L1ME3A LINE L1 -1007 5139 4980 2372 119 0 0 chr11 43965792 43966102 -106817451 - AluSq SINE Alu -1 312 3 782 246 45 94 chr11 43966102 43966618 -106816935 - L1ME3A LINE L1 -1166 4980 4503 423 228 27 20 chr11 43966619 43966634 -106816919 - L1MA10 LINE L1 -4 6330 6316 978 259 204 23 chr11 43966634 43967194 -106816359 - L1ME2 LINE L1 -9 6155 5497 321 338 91 7 chr11 43967286 43967440 -106816113 - MIR SINE MIR -47 215 49 1845 159 114 5 chr11 43967640 43968035 -106815518 + LTR47A LTR ERVL 1 438 -14 262 308 19 10 chr11 43968118 43968222 -106815331 + MIR SINE MIR 147 251 -11 2046 137 0 27 chr11 43968408 43968708 -106814845 - AluSq SINE Alu -21 292 1 3885 86 0 4 chr11 43969234 43969747 -106813806 + MER9 LTR ERVK 1 511 0 415 228 114 14 chr11 43969932 43970166 -106813387 - MER61D LTR ERV1 -24 897 275 2104 133 0 3 chr11 43970265 43970558 -106812995 - AluSx SINE Alu -20 292 1 746 153 0 8 chr11 43970558 43970689 -106812864 - LTR28 LTR ERV1 -890 130 1 228 54 27 0 chr11 43970720 43970757 -106812796 - L1MA9 LINE L1 -6 6306 6269 * 435 184 41 0 chr11 43970748 43970846 -106812707 + L1MA9 LINE L1 6162 6263 -49 3594 204 37 35 chr11 43970860 43972331 -106811222 - L1MA9 LINE L1 -196 6116 4640 942 177 14 36 chr11 43972326 43972476 -106811077 + L1 LINE L1 4415 4560 -1586 * 2042 182 35 33 chr11 43972476 43972905 -106810648 + MSTB1 LTR MaLR 1 430 -2 942 177 14 36 chr11 43972905 43972974 -106810579 + L1 LINE L1 4560 4629 -1517 309 296 7 92 chr11 43973072 43973214 -106810339 + L2 LINE L2 3184 3313 0 191 349 0 0 chr11 43973213 43973279 -106810274 + MIR SINE MIR 49 114 -148 * 792 258 97 30 chr11 43974146 43974608 -106808945 - L1MEc LINE L1 -3913 2483 1991 2366 218 45 6 chr11 43974616 43975143 -106808410 + MSTB1-int LTR MaLR 1099 1646 -5 2128 149 67 63 chr11 43975148 43975578 -106807975 + MSTB1 LTR MaLR 1 432 0 2092 285 78 35 chr11 43975586 43976915 -106806638 - L1MEc LINE L1 -4842 1554 169 294 309 98 8 chr11 43976996 43977119 -106806434 + L2 LINE L2 1720 1853 -1461 1553 351 53 20 chr11 43977137 43977898 -106805655 + L2 LINE L2 2110 2895 -419 343 172 40 81 chr11 43978886 43978985 -106804568 - MLT1K LTR MaLR -2 586 492 648 310 128 17 chr11 43979648 43980101 -106803452 - MLT1G1 LTR MaLR 0 595 38 36 0 0 0 chr11 43980228 43980264 -106803289 + AT_rich Low_complexity Low_complexity 1 36 0 2052 137 0 7 chr11 43980264 43980556 -106802997 - AluSx SINE Alu -22 290 1 314 281 0 0 chr11 43980723 43980805 -106802748 + MER103 DNA DNA 47 128 -38 239 229 83 64 chr11 43981180 43981289 -106802264 - MLT1D LTR MaLR -394 111 1 281 221 53 0 chr11 43981319 43981432 -106802121 + (TA)n Simple_repeat Simple_repeat 2 120 0 258 372 53 0 chr11 43981446 43981559 -106801994 + L2 LINE L2 3154 3272 0 1214 213 70 13 chr11 43981874 43982176 -106801377 + MLT1D LTR MaLR 172 605 -21 7433 34 7 0 chr11 43982176 43983537 -106800016 + L1PA4 LINE L1 4787 6153 -2 1214 213 70 13 chr11 43983537 43983560 -106799993 + MLT1D LTR MaLR 605 625 -1 24 0 0 0 chr11 43983661 43983685 -106799868 + AT_rich Low_complexity Low_complexity 1 24 0 975 188 5 0 chr11 43984623 43984815 -106798738 + L1PBa LINE L1 8 200 -6663 3017 137 7 12 chr11 43984817 43985584 -106797969 + L1PBa LINE L1 636 1560 -5303 580 118 31 31 chr11 43985592 43985918 -106797635 + C-rich Low_complexity Low_complexity 1 326 0 457 82 38 55 chr11 43985884 43986067 -106797486 + (CACCC)n Simple_repeat Simple_repeat 1 180 0 * 11400 227 14 30 chr11 43986250 43986441 -106797112 + L1PBa LINE L1 1682 1874 -4988 2203 117 0 22 chr11 43986441 43986757 -106796796 + AluSc SINE Alu 1 309 0 11400 227 14 30 chr11 43986757 43987163 -106796390 + L1PBa LINE L1 1874 2285 -4577 2114 119 10 29 chr11 43987163 43987474 -106796079 - AluSp SINE Alu -8 305 1 11400 227 14 30 chr11 43987474 43991069 -106792484 + L1PBa LINE L1 2285 5971 -891 2497 79 38 0 chr11 43991069 43991409 -106792144 + L1PB1 LINE L1 5798 6150 -1 29 47 0 0 chr11 43991409 43991452 -106792101 + AT_rich Low_complexity Low_complexity 1 43 0 2045 123 11 0 chr11 43991653 43991938 -106791615 - AluSp SINE Alu -22 291 4 2164 121 13 0 chr11 43992256 43992563 -106790990 + AluSp SINE Alu 1 311 -2 259 263 76 10 chr11 43992609 43992807 -106790746 + MER114 LTR ERV 210 420 -228 23 0 0 0 chr11 43992812 43992835 -106790718 + AT_rich Low_complexity Low_complexity 1 23 0 3468 212 49 27 chr11 43992850 43994584 -106788969 - L1MB2 LINE L1 -12 6159 4398 735 253 14 43 chr11 43994581 43994858 -106788695 - L1MB7 LINE L1 0 6184 5916 * 3640 242 50 53 chr11 43994860 43995352 -106788201 - L1MB2 LINE L1 -1730 4416 3924 24249 43 3 0 chr11 43995352 43999158 -106784395 - L1PA4 LINE L1 -1 6154 2339 3640 242 50 53 chr11 43999158 44000408 -106783145 - L1MB2 LINE L1 -2222 3924 2680 342 125 0 62 chr11 44000433 44000497 -106783056 - Tigger7 DNA MER2_type -26 2561 2502 1854 147 105 11 chr11 44000498 44000880 -106782673 + MSTA LTR MaLR 1 418 -10 9087 151 9 42 chr11 44000898 44002529 -106781024 + MSTA-int LTR MaLR 3 1580 0 1824 143 138 29 chr11 44002529 44002913 -106780640 + MSTA LTR MaLR 1 426 -2 28 0 0 0 chr11 44002997 44003025 -106780528 + AT_rich Low_complexity Low_complexity 1 28 0 923 236 72 58 chr11 44003087 44003426 -106780127 - MLT1A1 LTR MaLR 0 365 19 2769 143 9 2 chr11 44003426 44003851 -106779702 + MSTA LTR MaLR 1 428 0 923 236 72 58 chr11 44003851 44003871 -106779682 - MLT1A1 LTR MaLR -346 19 1 309 205 24 126 chr11 44003875 44004002 -106779551 + L1ME LINE L1 5372 5485 -2323 619 126 92 0 chr11 44004012 44004131 -106779422 - AluSg/x SINE Alu -7 305 176 310 270 21 8 chr11 44004240 44004427 -106779126 + L1ME LINE L1 5692 5881 -289 203 274 20 20 chr11 44004452 44004598 -106778955 + (TA)n Simple_repeat Simple_repeat 2 147 0 200 289 0 56 chr11 44004576 44004666 -106778887 + (TCTA)n Simple_repeat Simple_repeat 1 85 0 * 270 369 95 12 chr11 44005154 44005322 -106778231 - MIR3 SINE MIR -9 199 18 311 333 130 0 chr11 44006338 44006476 -106777077 - MIR SINE MIR -67 195 40 746 265 24 0 chr11 44006500 44006666 -106776887 - MER5A DNA MER1_type -6 183 14 2975 174 34 9 chr11 44008158 44009220 -106774333 + L1MA5 LINE L1 4711 5788 -515 519 154 0 11 chr11 44009222 44009313 -106774240 + MER4A LTR ERV1 3 92 -572 1530 113 30 79 chr11 44009314 44009677 -106773876 + MER4A LTR ERV1 261 664 0 2272 172 19 47 chr11 44009677 44010027 -106773526 + L1MA5 LINE L1 5785 6116 -184 2155 110 14 0 chr11 44010027 44010318 -106773235 - AluSq SINE Alu -18 295 1 2272 172 19 47 chr11 44010318 44010496 -106773057 + L1MA5 LINE L1 6116 6298 -2 1014 157 26 11 chr11 44010638 44010829 -106772724 - THE1A LTR MaLR -4 351 158 3744 201 26 3 chr11 44010839 44011656 -106771897 + L1P3 LINE L1 11 831 -5315 6681 114 161 74 chr11 44011656 44013179 -106770374 + pTR5 LTR ERV1 784 2438 0 26136 90 17 5 chr11 44013182 44017115 -106766438 + L1PA6 LINE L1 1445 6235 -1349 223 170 0 0 chr11 44017115 44017162 -106766391 + (TA)n Simple_repeat Simple_repeat 1 47 0 6970 58 11 0 chr11 44017162 44018518 -106765035 + L1PA6 LINE L1 6229 7590 -2 956 153 12 12 chr11 44018536 44018706 -106764847 - THE1A LTR MaLR -194 170 1 1206 185 45 6 chr11 44020659 44021059 -106762494 + MER72 LTR ERV1 9 455 -267 1715 195 41 52 chr11 44021059 44021611 -106761942 - MLT2A2 LTR ERVL 0 554 1 521 86 0 181 chr11 44021621 44021691 -106761862 + MER72 LTR ERV1 628 671 -51 2244 114 0 0 chr11 44021691 44021990 -106761563 + AluSg SINE Alu 11 309 -1 521 86 0 181 chr11 44021990 44022035 -106761518 + MER72 LTR ERV1 671 722 0 244 62 21 21 chr11 44022302 44022350 -106761203 + (TTTTA)n Simple_repeat Simple_repeat 3 50 0 402 75 11 129 chr11 44022365 44022437 -106761116 + MER4B LTR ERV1 19 79 -531 3076 121 35 66 chr11 44022437 44023056 -106760497 - MER4A LTR ERV1 0 600 1 402 75 11 129 chr11 44023056 44023076 -106760477 + MER4B LTR ERV1 79 100 -510 1835 214 109 55 chr11 44023082 44023594 -106759959 + MER50 LTR ERV1 10 570 -164 2510 81 3 0 chr11 44023594 44023902 -106759651 - AluSp SINE Alu -4 309 1 1835 214 109 55 chr11 44023902 44024077 -106759476 + MER50 LTR ERV1 570 734 0 3632 154 80 39 chr11 44024077 44024806 -106758747 + MER4D LTR ERV1 96 860 -43 2058 121 24 0 chr11 44024806 44025096 -106758457 - AluSc SINE Alu -12 297 1 3632 154 80 39 chr11 44025096 44025137 -106758416 + MER4D LTR ERV1 860 898 -5 257 257 95 34 chr11 44025664 44025812 -106757741 - MLT1G1 LTR MaLR -290 305 149 1928 213 96 87 chr11 44025909 44026689 -106756864 + MER21B LTR ERV1 17 803 -60 2022 224 30 0 chr11 44026726 44027154 -106756399 + LTR53 LTR ERVL 41 481 -38 258 170 0 0 chr11 44027216 44027263 -106756290 - MLT1G1 LTR MaLR -541 54 8 2141 127 7 0 chr11 44027492 44027791 -106755762 - AluSg1 SINE Alu -8 301 1 1620 169 12 68 chr11 44028007 44028332 -106755221 - AluJo SINE Alu -3 309 3 1035 233 8 16 chr11 44028577 44028830 -106754723 - MER4D LTR ERV1 0 903 653 304 71 0 0 chr11 44028829 44028871 -106754682 + MADE1 DNA Mariner 36 77 -3 * 813 172 18 0 chr11 44028918 44029265 -106754288 + (TATG)n Simple_repeat Simple_repeat 1 353 0 21 71 0 0 chr11 44030143 44030185 -106753368 + AT_rich Low_complexity Low_complexity 1 42 0 231 304 0 0 chr11 44030393 44030449 -106753104 + (CA)n Simple_repeat Simple_repeat 1 56 0 2132 107 3 17 chr11 44030454 44030754 -106752799 + AluSc SINE Alu 10 305 -4 222 307 11 23 chr11 44030827 44030915 -106752638 + GA-rich Low_complexity Low_complexity 2 88 0 203 296 0 74 chr11 44030985 44031066 -106752487 + L2 LINE L2 3150 3224 -89 371 269 32 75 chr11 44031559 44031745 -106751808 - MIR SINE MIR -50 212 35 1347 218 49 68 chr11 44031879 44032352 -106751201 - MLT1C LTR MaLR 0 467 4 211 200 0 0 chr11 44033473 44033513 -106750040 + (CA)n Simple_repeat Simple_repeat 1 40 0 309 191 12 36 chr11 44033694 44033778 -106749775 + MER67D LTR ERV1 2 83 -431 467 115 0 0 chr11 44033828 44033906 -106749647 + MER67D LTR ERV1 78 155 -359 1576 89 25 0 chr11 44033992 44034195 -106749358 + AluSc SINE Alu 82 289 -20 1320 166 4 4 chr11 44034199 44034428 -106749125 + MER67C LTR ERV1 175 403 -307 288 248 121 14 chr11 44034458 44034599 -106748954 + MER67D LTR ERV1 359 514 0 347 381 13 0 chr11 44035486 44035641 -106747912 - LTR33 LTR ERVL -321 200 44 345 281 0 31 chr11 44036216 44036312 -106747241 - MIR SINE MIR 0 262 170 500 310 131 64 chr11 44036312 44036799 -106746754 + LTR33 LTR ERVL 1 520 -1 217 23 23 47 chr11 44036831 44036874 -106746679 + (TTTTA)n Simple_repeat Simple_repeat 2 120 0 2039 127 3 3 chr11 44036874 44037157 -106746396 - AluSq SINE Alu -30 283 1 206 391 46 0 chr11 44037163 44037250 -106746303 - MIR SINE MIR -118 144 54 332 250 0 0 chr11 44037374 44037446 -106746107 + MER3 DNA MER1_type 46 117 -92 * 373 154 161 31 chr11 44037444 44037574 -106745979 + MER3 DNA MER1_type 2469 2615 0 1666 230 50 38 chr11 44038041 44038484 -106745069 - MER77 LTR ERV1 -104 501 54 1808 195 60 152 chr11 44039049 44039316 -106744237 + LTR8A LTR ERV1 1 291 -436 2500 131 0 8 chr11 44039316 44039683 -106743870 + THE1B LTR MaLR 1 364 0 1808 195 60 152 chr11 44039683 44040216 -106743337 + LTR8A LTR ERV1 291 727 0 665 308 68 38 chr11 44040694 44041090 -106742463 + MLT1I LTR MaLR 1 408 -1 1699 184 18 0 chr11 44041252 44041530 -106742023 + AluSx SINE Alu 3 285 -27 21 57 0 0 chr11 44042326 44042361 -106741192 + AT_rich Low_complexity Low_complexity 1 35 0 433 169 12 0 chr11 44042666 44042749 -106740804 - AluJ/FLAM SINE Alu -228 84 1 322 279 0 146 chr11 44042907 44043065 -106740488 - L2 LINE L2 -1 3271 3137 2001 124 30 0 chr11 44043396 44043695 -106739858 - AluSp SINE Alu -5 308 1 3592 11 0 0 chr11 44043717 44044340 -106739213 - L1PA2 LINE L1 -491 5664 5042 4223 8 0 0 chr11 44044340 44044815 -106738738 + L1PA2 LINE L1 5681 6155 0 32 0 0 0 chr11 44044815 44044847 -106738706 + AT_rich Low_complexity Low_complexity 1 32 0 1150 261 11 39 chr11 44046060 44046422 -106737131 + MER97a DNA MER1_type? 1 352 -542 886 266 150 33 chr11 44046422 44046874 -106736679 + MLT1D LTR MaLR 1 505 0 * 1053 286 99 24 chr11 44046874 44047565 -106735988 + MER97c DNA MER1_type? 344 1086 -4 249 314 29 51 chr11 44048351 44048488 -106735065 + MIR SINE MIR 20 153 -109 260 322 43 26 chr11 44049325 44049440 -106734113 + MIR SINE MIR 20 136 -126 966 319 133 36 chr11 44049696 44049740 -106733813 + MER115 DNA AcHobo 3 41 -652 2245 80 0 27 chr11 44049740 44050041 -106733512 - AluY SINE Alu -16 295 3 966 319 133 36 chr11 44050041 44050626 -106732927 + MER115 DNA AcHobo 41 693 0 5852 28 0 0 chr11 44050919 44051604 -106731949 - L1PA4 LINE L1 0 6155 5471 1500 167 10 66 chr11 44051823 44051939 -106731614 + AluJo SINE Alu 7 128 -184 2009 139 3 0 chr11 44051939 44052227 -106731326 - AluSx SINE Alu -23 289 1 1500 167 10 66 chr11 44052227 44052415 -106731138 + AluJo SINE Alu 128 294 -18 1576 108 9 0 chr11 44053616 44053830 -106729723 - AluSq SINE Alu -14 299 84 774 161 18 24 chr11 44054342 44054510 -106729043 + L1MB8 LINE L1 6001 6167 -11 2190 127 0 10 chr11 44054510 44054824 -106728729 - AluSx SINE Alu -1 311 1 2159 116 26 0 chr11 44055332 44055634 -106727919 - AluSx SINE Alu -2 310 1 938 98 0 0 chr11 44056582 44056714 -106726839 + AluY SINE Alu 177 308 -3 290 278 0 52 chr11 44056714 44056811 -106726742 - MIR SINE MIR -154 108 17 940 158 0 33 chr11 44056844 44057027 -106726526 - AluSg/x SINE Alu 0 312 136 1712 134 0 8 chr11 44057129 44057376 -106726177 - AluSx SINE Alu -67 245 1 400 283 7 65 chr11 44058013 44058151 -106725402 + MLT1J2 LTR MaLR 37 166 -284 202 222 22 0 chr11 44058800 44058845 -106724708 - MIR SINE MIR -116 146 101 763 296 106 57 chr11 44058846 44059392 -106724161 + MLT1G1 LTR MaLR 8 558 -32 26 0 0 0 chr11 44059412 44059438 -106724115 + AT_rich Low_complexity Low_complexity 1 26 0 180 373 0 0 chr11 44059438 44059489 -106724064 - MIR SINE MIR -183 79 29 303 246 9 79 chr11 44059604 44059718 -106723835 + L2 LINE L2 3208 3313 0 307 351 96 14 chr11 44059790 44059998 -106723555 - MIR SINE MIR -4 258 34 1265 300 57 19 chr11 44060003 44060390 -106723163 + LTR33 LTR ERVL 3 415 -106 2206 78 0 11 chr11 44060390 44060734 -106722819 - AluY SINE Alu 0 341 1 1265 300 57 19 chr11 44060734 44060818 -106722735 + LTR33 LTR ERVL 415 494 -27 1348 337 75 20 chr11 44060826 44061435 -106722118 - MER115 DNA AcHobo -9 684 42 346 122 74 0 chr11 44061909 44062057 -106721496 + (TA)n Simple_repeat Simple_repeat 2 160 0 294 180 55 16 chr11 44062057 44062185 -106721368 + (TTATA)n Simple_repeat Simple_repeat 4 136 0 21 0 0 0 chr11 44062201 44062222 -106721331 + AT_rich Low_complexity Low_complexity 1 21 0 206 145 81 0 chr11 44062223 44062347 -106721206 + (TA)n Simple_repeat Simple_repeat 2 135 0 368 148 59 0 chr11 44062373 44062542 -106721011 + (TA)n Simple_repeat Simple_repeat 2 180 0 26 0 0 0 chr11 44062542 44062568 -106720985 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr11 44063135 44063166 -106720387 + AT_rich Low_complexity Low_complexity 1 31 0 465 284 55 0 chr11 44063245 44063372 -106720181 + MER5C DNA MER1_type 1 134 -190 391 278 21 56 chr11 44063472 44063616 -106719937 - L2 LINE L2 0 3272 3134 336 48 0 0 chr11 44063718 44063760 -106719793 + (CA)n Simple_repeat Simple_repeat 2 43 0 207 160 40 0 chr11 44063851 44063901 -106719652 + (TA)n Simple_repeat Simple_repeat 1 52 0 1035 100 0 0 chr11 44063920 44064070 -106719483 + (TA)n Simple_repeat Simple_repeat 1 150 0 632 322 105 53 chr11 44064130 44064316 -106719237 - L2 LINE L2 -496 2818 2643 1547 232 0 3 chr11 44064316 44064613 -106718940 - AluJb SINE Alu -16 296 1 1495 229 27 56 chr11 44064620 44065101 -106718452 + MLT1C LTR MaLR 1 467 0 632 322 105 53 chr11 44065101 44065571 -106717982 - L2 LINE L2 -676 2638 2119 189 107 0 0 chr11 44065708 44065736 -106717817 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 986 192 5 15 chr11 44065809 44066012 -106717541 - MER89 LTR ERV1 0 559 359 827 243 49 5 chr11 44066069 44066254 -106717299 - MER89 LTR ERV1 -207 352 160 384 270 16 17 chr11 44066257 44066394 -106717159 + L1MD3 LINE L1 7680 7987 0 195 42 0 0 chr11 44067532 44067556 -106715997 + (TAA)n Simple_repeat Simple_repeat 2 25 0 311 347 81 22 chr11 44067571 44067793 -106715760 - MIR SINE MIR -26 236 2 2598 188 40 41 chr11 44067971 44068796 -106714757 + MER54A LTR ERVL 1 644 0 5207 241 40 41 chr11 44070018 44072041 -106711512 - L1M1 LINE L1 -4831 2734 13 307 256 22 0 chr11 44072292 44072382 -106711171 + (TTATA)n Simple_repeat Simple_repeat 3 94 0 742 178 101 53 chr11 44073802 44073971 -106709582 - MER45A DNA AcHobo -1 177 1 890 133 76 44 chr11 44074550 44074708 -106708845 + AluSg/x SINE Alu 135 297 -13 800 270 87 19 chr11 44075020 44075331 -106708222 + L1ME3A LINE L1 5838 6169 -1 2270 70 0 11 chr11 44075569 44075935 -106707618 + AluY SINE Alu 1 363 0 21 0 0 0 chr11 44077266 44077287 -106706266 + AT_rich Low_complexity Low_complexity 1 21 0 25 75 0 0 chr11 44077436 44077489 -106706064 + AT_rich Low_complexity Low_complexity 1 53 0 488 219 148 31 chr11 44077584 44077840 -106705713 + L1ME4a LINE L1 5816 6101 -20 1970 116 10 10 chr11 44079431 44079734 -106703819 + AluSx SINE Alu 1 303 -9 299 333 133 0 chr11 44080287 44080392 -106703161 + L2 LINE L2 3149 3267 -5 192 40 0 0 chr11 44080392 44080417 -106703136 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 931 129 0 0 chr11 44080418 44080542 -106703011 + AluSq/x SINE Alu 2 125 -187 223 281 50 58 chr11 44081031 44081152 -106702401 - L2 LINE L2 -8 3305 3186 22 0 0 0 chr11 44082698 44082720 -106700833 + AT_rich Low_complexity Low_complexity 1 22 0 268 256 51 13 chr11 44082721 44082799 -106700754 - L2 LINE L2 0 3313 3233 1245 291 135 28 chr11 44083471 44084152 -106699401 + L1MDa LINE L1 123 972 -5568 773 227 26 18 chr11 44084152 44084381 -106699172 - LTR55 LTR ERV -317 231 1 3771 238 55 47 chr11 44084423 44084982 -106698571 + L1MDa LINE L1 1262 1815 -4725 1121 59 29 6 chr11 44084982 44085152 -106698401 + (GAAA)n Simple_repeat Simple_repeat 2 175 0 3771 238 55 47 chr11 44085152 44086853 -106696700 + L1MDa LINE L1 1815 3540 -3000 1625 198 14 3 chr11 44086853 44087207 -106696346 + L1MB3 LINE L1 5823 6180 -3 3771 238 55 47 chr11 44087207 44087303 -106696250 + L1MDa LINE L1 3540 3634 -2906 * 4410 217 8 11 chr11 44087295 44088391 -106695162 - L1P5 LINE L1 -891 5255 4163 1411 105 14 0 chr11 44088386 44088605 -106694948 + L1P5 LINE L1 5266 5487 -664 * 29397 125 15 60 chr11 44088609 44095042 -106688511 + L1PA7 LINE L1 9 6139 -15 345 47 0 0 chr11 44095077 44095120 -106688433 + (CA)n Simple_repeat Simple_repeat 2 44 0 1239 193 16 11 chr11 44095146 44095375 -106688178 + L1ME LINE L1 5456 5685 -479 3652 96 7 36 chr11 44095375 44095946 -106687607 + L1PB1 LINE L1 5590 6147 -4 1239 193 16 11 chr11 44095946 44096014 -106687539 + L1ME LINE L1 5685 5751 -413 5571 187 49 55 chr11 44096057 44097995 -106685558 + L1MA7 LINE L1 3857 5777 -514 4524 234 22 21 chr11 44098201 44100271 -106683282 + L1PA15 LINE L1 1255 3343 -3454 472 211 0 0 chr11 44100375 44100470 -106683083 + L1 LINE L1 3628 3722 -3075 2190 135 30 28 chr11 44100474 44100745 -106682808 + THE1B LTR MaLR 1 275 -89 3608 142 91 12 chr11 44100745 44101384 -106682169 - LTR8 LTR ERV1 -2 689 1 2190 135 30 28 chr11 44101384 44101475 -106682078 + THE1B LTR MaLR 275 364 0 10158 119 16 27 chr11 44101475 44103073 -106680480 + THE1B-int LTR MaLR 1 1580 0 2204 130 40 11 chr11 44103073 44103427 -106680126 + THE1B LTR MaLR 1 364 0 9326 230 51 6 chr11 44103433 44106456 -106677097 + L1PA15 LINE L1 3728 6810 -6 2031 220 7 36 chr11 44106541 44107090 -106676463 + L1MA7 LINE L1 5759 6291 0 670 242 36 52 chr11 44107151 44107351 -106676202 - L1ME2 LINE L1 -9 6155 5958 2347 75 23 3 chr11 44107351 44107656 -106675897 - AluY SINE Alu 0 311 1 670 242 36 52 chr11 44107656 44107703 -106675850 - L1ME2 LINE L1 -206 5958 5912 3683 265 60 51 chr11 44107781 44109370 -106674183 + L1MD1 LINE L1 3392 4966 -1180 279 0 0 0 chr11 44109370 44109401 -106674152 + (CA)n Simple_repeat Simple_repeat 2 32 0 3683 265 60 51 chr11 44109401 44109560 -106673993 + L1MD1 LINE L1 4966 5159 -987 2059 120 7 3 chr11 44109560 44109859 -106673694 + AluSq SINE Alu 1 300 -13 3683 265 60 51 chr11 44109859 44109962 -106673591 + L1MD1 LINE L1 5159 5260 -886 814 134 8 0 chr11 44109963 44110082 -106673471 + AluJb SINE Alu 1 120 -192 183 42 0 0 chr11 44110082 44110106 -106673447 + (CAA)n Simple_repeat Simple_repeat 2 25 0 805 195 13 58 chr11 44110114 44110340 -106673213 + L1MD1 LINE L1 5254 5469 -773 270 219 9 84 chr11 44110340 44110435 -106673118 + AluSp SINE Alu 135 180 -123 2772 234 30 32 chr11 44110476 44110714 -106672839 + L1MD1 LINE L1 5469 5706 -536 2088 108 16 13 chr11 44110714 44111021 -106672532 - AluSx SINE Alu -4 308 1 2772 234 30 32 chr11 44111021 44111558 -106671995 + L1MD1 LINE L1 5706 6242 0 26 50 0 0 chr11 44111798 44111838 -106671715 + AT_rich Low_complexity Low_complexity 1 40 0 469 244 11 0 chr11 44112976 44113066 -106670487 + MER5A DNA MER1_type 11 101 -88 1935 152 29 35 chr11 44113242 44113617 -106669936 + THE1C LTR MaLR 3 375 0 9428 136 48 7 chr11 44113617 44115134 -106668419 + THE1C-int LTR MaLR 1 1580 0 2002 132 24 29 chr11 44115134 44115475 -106668078 + THE1C LTR MaLR 1 339 -36 184 313 38 12 chr11 44115582 44115662 -106667891 - MIR SINE MIR -107 155 74 1646 81 5 5 chr11 44115826 44116047 -106667506 - pTR5 LTR ERV1 -2046 392 172 361 253 10 0 chr11 44116049 44116148 -106667405 - LTR30 LTR ERV1 -79 643 544 5401 107 36 26 chr11 44116148 44117260 -106666293 - pTR5 LTR ERV1 -413 2025 743 1683 154 193 14 chr11 44117330 44117693 -106665860 - MSTA LTR MaLR 0 428 1 302 313 80 35 chr11 44118476 44118677 -106664876 - L3 LINE CR1 -1173 404 195 2151 136 3 69 chr11 44118869 44119259 -106664294 - THE1B LTR MaLR 0 364 1 215 328 0 0 chr11 44119427 44119485 -106664068 + L2 LINE L2 3205 3262 -10 277 241 53 145 chr11 44119845 44120073 -106663480 + MLT1L LTR MaLR 188 394 -221 192 326 132 39 chr11 44120393 44120522 -106663031 + L2 LINE L2 3173 3313 0 183 268 21 62 chr11 44120602 44120699 -106662854 + L2 LINE L2 3144 3236 -77 847 216 89 108 chr11 44120873 44121243 -106662310 - MLT1A1 LTR MaLR 0 365 3 21 0 0 0 chr11 44121493 44121514 -106662039 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 44121894 44121916 -106661637 + AT_rich Low_complexity Low_complexity 1 22 0 305 29 0 0 chr11 44121973 44122008 -106661545 + (T)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr11 44122193 44122216 -106661337 + AT_rich Low_complexity Low_complexity 1 23 0 1255 221 130 27 chr11 44123383 44123571 -106659982 + MLT1A1 LTR MaLR 1 168 -197 2171 127 0 0 chr11 44123571 44123870 -106659683 + AluSg SINE Alu 1 299 -11 1255 221 130 27 chr11 44123870 44124012 -106659541 + MLT1A1 LTR MaLR 168 365 0 209 309 0 0 chr11 44124053 44124108 -106659445 - L2 LINE L2 -5 3267 3213 817 286 70 72 chr11 44125066 44125535 -106658018 - L2 LINE L2 0 3313 2846 2681 135 47 11 chr11 44125577 44126044 -106657509 - LTR19A LTR ERV1 0 486 3 372 310 32 19 chr11 44126574 44126732 -106656821 - L2 LINE L2 -510 2804 2645 921 254 38 0 chr11 44126747 44126956 -106656597 + MER58A DNA MER1_type 2 218 -6 562 288 42 45 chr11 44127259 44127574 -106655979 - MLT1I LTR MaLR -49 360 68 441 222 70 70 chr11 44127647 44127818 -106655735 + LTR41 LTR ERVL 7 177 -596 649 189 95 6 chr11 44127821 44127990 -106655563 + MER53 DNA DNA 3 186 -3 229 123 18 18 chr11 44128015 44128072 -106655481 + T-rich Low_complexity Low_complexity 4 60 0 1274 56 0 0 chr11 44128081 44128241 -106655312 - L1PA5 LINE L1 -6 6148 5989 259 240 79 26 chr11 44128475 44128643 -106654910 + LTR41 LTR ERVL 608 787 -8 1060 177 125 117 chr11 44129057 44129099 -106654454 + MLT1B LTR MaLR 1 41 -349 2158 99 0 0 chr11 44129099 44129412 -106654141 + AluSx SINE Alu 1 313 0 1060 177 125 117 chr11 44129412 44129719 -106653834 + MLT1B LTR MaLR 41 354 -36 299 104 0 0 chr11 44129715 44129763 -106653790 - MADE1 DNA Mariner -32 48 1 * 206 342 184 26 chr11 44130057 44130209 -106653344 - MER5A DNA MER1_type -2 187 12 241 45 23 23 chr11 44130215 44130259 -106653294 + (CAA)n Simple_repeat Simple_repeat 3 46 0 499 330 18 13 chr11 44131041 44131268 -106652285 + L1MC/D LINE L1 5517 5744 -2064 219 393 8 0 chr11 44132303 44132425 -106651128 + L2 LINE L2 2887 3009 -263 219 189 0 0 chr11 44132782 44132835 -106650718 + (TA)n Simple_repeat Simple_repeat 2 54 0 562 181 1 43 chr11 44134652 44134784 -106648769 + MLT1C LTR MaLR 245 461 -6 19859 78 6 10 chr11 44134971 44135314 -106648239 - L1PA6 LINE L1 0 6469 6126 2272 87 3 0 chr11 44135314 44135602 -106647951 - AluY SINE Alu -22 289 1 19859 78 6 10 chr11 44135602 44136621 -106646932 - L1PA6 LINE L1 -343 6126 5104 369 0 0 0 chr11 44136621 44136662 -106646891 + (TA)n Simple_repeat Simple_repeat 1 41 0 19859 78 6 10 chr11 44136662 44140638 -106642915 - L1PA6 LINE L1 -1365 5104 1162 621 115 0 0 chr11 44140636 44140723 -106642830 - L1PA6 LINE L1 -6365 96 10 * 378 242 56 73 chr11 44141034 44141212 -106642341 + MLT1J LTR MaLR 137 311 -200 328 309 130 12 chr11 44141559 44141721 -106641832 + MIR SINE MIR 82 262 0 243 266 150 44 chr11 44143465 44143578 -106639975 - MIR SINE MIR -102 160 36 343 66 0 0 chr11 44144665 44144715 -106638838 - Alu SINE Alu -255 47 4 510 296 90 34 chr11 44144786 44145053 -106638500 + L2 LINE L2 3032 3313 0 709 296 57 17 chr11 44145878 44146108 -106637445 + MIR SINE MIR 8 246 -16 248 331 78 42 chr11 44146630 44146772 -106636781 - MIR SINE MIR -114 148 2 575 137 34 23 chr11 44149050 44149225 -106634328 + (CA)n Simple_repeat Simple_repeat 1 177 0 453 108 66 24 chr11 44149247 44149414 -106634139 + (CA)n Simple_repeat Simple_repeat 1 174 0 4629 297 140 38 chr11 44149694 44150915 -106632638 + L2 LINE L2 144 1239 -2075 2387 100 0 0 chr11 44150915 44151215 -106632338 + AluSg SINE Alu 1 300 -10 4629 297 140 38 chr11 44151215 44152565 -106630988 + L2 LINE L2 1239 2977 -337 323 326 0 43 chr11 44152805 44152946 -106630607 + L2 LINE L2 3179 3313 0 346 242 0 22 chr11 44153129 44153220 -106630333 + MIR SINE MIR 172 260 -2 249 370 42 0 chr11 44154109 44154228 -106629325 - MIR3 SINE MIR -3 205 82 1164 146 7 114 chr11 44154431 44154739 -106628814 - L1MD1 LINE L1 -270 5972 5698 * 2687 122 22 28 chr11 44154725 44154923 -106628630 + L1P4 LINE L1 5159 5357 -808 2423 72 10 0 chr11 44154923 44155227 -106628326 + AluY SINE Alu 1 307 -4 2687 122 22 28 chr11 44155227 44155549 -106628004 + L1P4 LINE L1 5357 5813 -352 2245 156 13 5 chr11 44155554 44155945 -106627608 + L1PA15 LINE L1 5768 6161 -4 1681 173 8 23 chr11 44155970 44156357 -106627196 - L1MD1 LINE L1 -562 5680 5300 21 36 0 0 chr11 44156990 44157018 -106626535 + AT_rich Low_complexity Low_complexity 1 28 0 395 164 214 50 chr11 44157667 44157826 -106625727 - MER53 DNA DNA -3 186 2 301 167 74 0 chr11 44157841 44157895 -106625658 + MIR SINE MIR 119 176 -86 752 294 42 35 chr11 44157931 44158244 -106625309 + L2 LINE L2 2999 3313 0 803 311 8 4 chr11 44159752 44159990 -106623563 - MIR SINE MIR -22 240 2 186 43 0 0 chr11 44160068 44160091 -106623462 + (T)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr11 44160172 44160194 -106623359 + AT_rich Low_complexity Low_complexity 1 22 0 210 208 0 21 chr11 44161252 44161300 -106622253 + T-rich Low_complexity Low_complexity 2 48 0 382 309 39 11 chr11 44161527 44161705 -106621848 + MER117 DNA MER1_type 8 190 -7 270 294 126 14 chr11 44161866 44162009 -106621544 - L3b LINE CR1 -186 1397 1239 2240 123 7 0 chr11 44165065 44165374 -106618179 + AluSx SINE Alu 1 311 -1 1955 131 20 26 chr11 44165758 44166064 -106617489 + AluSx SINE Alu 1 304 -8 789 228 0 6 chr11 44166922 44167089 -106616464 - FRAM SINE Alu -10 166 1 704 217 0 0 chr11 44167419 44167562 -106615991 + L1MC4 LINE L1 7416 7558 -484 2404 118 8 0 chr11 44167564 44167927 -106615626 - L1PA13 LINE L1 -14 6149 5784 3045 132 31 2 chr11 44167930 44168476 -106615077 + L1PA13 LINE L1 5254 5815 -348 662 257 122 4 chr11 44168468 44168713 -106614840 + L1MC4 LINE L1 7547 7820 -222 * 1567 166 58 60 chr11 44168793 44168842 -106614711 - MSTD LTR MaLR 0 396 348 2196 111 10 3 chr11 44168842 44169140 -106614413 - AluSq SINE Alu -13 300 1 1567 166 58 60 chr11 44169140 44169487 -106614066 - MSTD LTR MaLR -48 348 1 288 180 16 0 chr11 44169497 44169558 -106613995 + L1MC4 LINE L1 7922 7983 -59 709 179 15 51 chr11 44169560 44169755 -106613798 + MER53 DNA DNA 1 188 -1 477 121 0 0 chr11 44172359 44172425 -106611128 - AluS SINE Alu -247 66 1 317 136 51 0 chr11 44172430 44172489 -106611064 - MSTD LTR MaLR -43 353 292 2609 110 3 3 chr11 44173638 44174002 -106609551 - THE1B LTR MaLR 0 364 1 313 264 186 21 chr11 44174345 44174485 -106609068 + MER45A DNA AcHobo 15 177 -1 329 243 187 9 chr11 44175949 44176056 -106607497 - L2 LINE L2 0 3272 3147 2034 189 39 50 chr11 44176410 44176484 -106607069 + L1MA9 LINE L1 5711 5784 -528 245 29 29 0 chr11 44176484 44176518 -106607035 + (CA)n Simple_repeat Simple_repeat 2 36 0 2034 189 39 50 chr11 44176518 44176559 -106606994 + L1MA9 LINE L1 5784 5824 -488 2302 106 6 0 chr11 44176559 44176870 -106606683 + AluSq SINE Alu 1 313 0 2034 189 39 50 chr11 44176870 44177395 -106606158 + L1MA9 LINE L1 5824 6312 0 323 145 0 29 chr11 44177500 44177569 -106605984 + L1PA16 LINE L1 6084 6150 -16 360 353 35 6 chr11 44177861 44178034 -106605519 + MER5B DNA MER1_type 1 178 0 232 303 0 11 chr11 44178207 44178296 -106605257 + MER112 DNA MER1_type 165 252 -8 385 346 85 55 chr11 44178754 44179153 -106604400 - L2 LINE L2 -15 3257 2847 22 0 0 0 chr11 44179717 44179739 -106603814 + AT_rich Low_complexity Low_complexity 1 22 0 3610 158 29 11 chr11 44179844 44180542 -106603011 + MER50 LTR ERV1 1 710 -24 400 308 6 26 chr11 44181048 44181100 -106602453 - MIR SINE MIR 0 262 211 201 74 0 0 chr11 44181100 44181127 -106602426 + (TG)n Simple_repeat Simple_repeat 1 27 0 400 308 6 26 chr11 44181127 44181219 -106602334 - MIR SINE MIR -51 211 119 2073 139 3 7 chr11 44181219 44181520 -106602033 + AluSx SINE Alu 1 300 -12 299 272 15 44 chr11 44181602 44181738 -106601815 + CT-rich Low_complexity Low_complexity 1 132 0 1988 142 0 36 chr11 44181949 44182258 -106601295 + AluSx SINE Alu 1 298 -14 341 335 12 6 chr11 44182284 44182457 -106601096 + Charlie8 DNA MER1_type 85 258 -2159 275 286 67 17 chr11 44182705 44182824 -106600729 - MER117 DNA MER1_type -49 148 24 1972 228 75 35 chr11 44182825 44183158 -106600395 - MLT1E LTR MaLR 0 593 226 3997 167 83 14 chr11 44183158 44183931 -106599622 + LTR1B LTR ERV1 1 826 0 1972 228 75 35 chr11 44183931 44184167 -106599386 - MLT1E LTR MaLR -367 226 1 1280 194 15 109 chr11 44184475 44184878 -106598675 - MLT1A1 LTR MaLR 0 365 1 4450 158 46 20 chr11 44185004 44185809 -106597744 + LTR1B LTR ERV1 1 826 0 366 221 7 143 chr11 44186422 44186562 -106596991 + L2 LINE L2 3192 3312 -1 1273 243 68 20 chr11 44187179 44187623 -106595930 + MLT1C LTR MaLR 1 465 -2 1153 235 54 25 chr11 44187812 44188165 -106595388 - MLT1A1 LTR MaLR -2 363 1 248 325 66 25 chr11 44188224 44188510 -106595043 + L1ME LINE L1 5525 5822 -299 1071 141 66 0 chr11 44188552 44188765 -106594788 - L1MA6 LINE L1 0 6300 6074 1836 202 57 25 chr11 44188962 44189398 -106594155 + MLT1C LTR MaLR 1 450 -17 2069 122 3 0 chr11 44190065 44190361 -106593192 - AluSp SINE Alu -16 297 1 260 59 0 0 chr11 44190514 44190548 -106593005 - MADE1 DNA Mariner -19 61 28 332 122 0 0 chr11 44190559 44190608 -106592945 + MADE1 DNA Mariner 32 80 0 315 317 89 22 chr11 44190612 44190792 -106592761 + MLT1I LTR MaLR 91 282 -127 342 319 44 0 chr11 44191348 44191483 -106592070 + MER20B DNA MER1_type 24 164 -619 2380 128 8 16 chr11 44191571 44191946 -106591607 - THE1C LTR MaLR 0 375 4 269 310 70 39 chr11 44192816 44193074 -106590479 + HAL1 LINE L1 1371 1636 -871 886 48 79 8 chr11 44193679 44193805 -106589748 - MER85 DNA T2_type -4 135 1 940 124 37 19 chr11 44193934 44194095 -106589458 + AluY SINE Alu 148 311 0 898 339 28 18 chr11 44194347 44194804 -106588749 - LTR16B LTR ERVL 0 464 3 1462 249 38 25 chr11 44195301 44195746 -106587807 + MLT1C LTR MaLR 17 467 0 21 0 0 0 chr11 44195767 44195788 -106587765 + AT_rich Low_complexity Low_complexity 1 21 0 908 163 64 35 chr11 44195810 44196013 -106587540 - MER3 DNA MER1_type 0 209 1 2001 101 37 14 chr11 44196344 44196640 -106586913 + AluSp SINE Alu 1 303 -10 22 0 0 0 chr11 44196971 44196993 -106586560 + AT_rich Low_complexity Low_complexity 1 22 0 39 0 0 0 chr11 44197362 44197401 -106586152 + AT_rich Low_complexity Low_complexity 1 39 0 324 315 79 15 chr11 44197403 44197606 -106585947 + L1MB1 LINE L1 3656 3871 -2275 278 287 11 0 chr11 44197612 44197699 -106585854 + L2 LINE L2 2041 2128 -1186 433 185 240 27 chr11 44197716 44197862 -106585691 + MER5A DNA MER1_type 13 189 0 515 269 80 55 chr11 44197985 44198260 -106585293 + L2 LINE L2 2296 2577 -737 3159 172 13 7 chr11 44198454 44199000 -106584553 - MER44D DNA MER2_type 0 605 2 195 114 0 0 chr11 44200344 44200379 -106583174 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1935 249 53 42 chr11 44200961 44201955 -106581598 - L1ME LINE L1 -667 6294 5171 943 300 46 71 chr11 44201968 44202768 -106580785 - L1ME LINE L1 -4371 2751 1972 335 281 20 59 chr11 44202820 44202894 -106580659 - L1ME LINE L1 -6192 231 165 2170 111 0 3 chr11 44202894 44203192 -106580361 + AluSg1 SINE Alu 1 297 -12 335 281 20 59 chr11 44203192 44203270 -106580283 - L1ME LINE L1 -6258 165 85 371 299 20 10 chr11 44203419 44203623 -106579930 - HAL1 LINE L1 -328 2179 1974 512 274 46 66 chr11 44203653 44203828 -106579725 + MER63A DNA MER1_type 18 190 -1498 1279 228 10 63 chr11 44203828 44204223 -106579330 - MLT1A2 LTR MaLR 0 374 1 512 274 46 66 chr11 44204223 44204244 -106579309 + MER63A DNA MER1_type 190 210 0 1127 289 121 43 chr11 44204294 44205279 -106578274 - HAL1 LINE L1 -613 1894 833 4344 181 12 4 chr11 44205307 44206246 -106577307 + L1MB1 LINE L1 4474 5420 -736 1161 204 17 0 chr11 44206351 44206586 -106576967 + L1PB4 LINE L1 5913 6151 -5 285 29 0 0 chr11 44207369 44207403 -106576150 + (CA)n Simple_repeat Simple_repeat 1 34 0 707 193 7 0 chr11 44207928 44208068 -106575485 - FLAM_C SINE Alu -2 141 1 3666 255 52 62 chr11 44208153 44209509 -106574044 + L1M3d LINE L1 6 1374 -4596 1937 146 0 0 chr11 44209509 44209838 -106573715 + AluSx SINE Alu 1 329 0 3666 255 52 62 chr11 44209838 44212084 -106571469 + L1M3d LINE L1 1374 3299 -2671 310 132 0 0 chr11 44212085 44212138 -106571415 + LTR9 LTR ERV1 1 53 -559 2706 194 39 2 chr11 44212138 44212675 -106570878 + L1MB1 LINE L1 5588 6144 -24 1490 161 41 8 chr11 44213896 44214163 -106569390 + AluJb SINE Alu 29 304 -8 21 57 0 0 chr11 44214429 44214464 -106569089 + AT_rich Low_complexity Low_complexity 1 35 0 671 301 37 20 chr11 44215230 44215480 -106568073 - L1ME3A LINE L1 -21 6083 5826 2386 77 0 3 chr11 44215480 44215790 -106567763 - AluY SINE Alu -2 309 1 671 301 37 20 chr11 44215790 44215838 -106567715 - L1ME3A LINE L1 -278 5826 5780 183 129 0 0 chr11 44215865 44215896 -106567657 + (CATA)n Simple_repeat Simple_repeat 2 32 0 241 235 118 0 chr11 44215932 44216017 -106567536 - L1ME3A LINE L1 -555 5549 5455 544 298 60 57 chr11 44216040 44216305 -106567248 - MLT1H LTR MaLR -241 308 43 1976 147 3 0 chr11 44216576 44216868 -106566685 + AluSg SINE Alu 1 293 -17 285 262 0 103 chr11 44217974 44218081 -106565472 - MLT1H LTR MaLR 0 549 454 1574 261 57 48 chr11 44218416 44219282 -106564271 - L1ME3A LINE L1 -951 5129 4257 2221 152 19 3 chr11 44219468 44219837 -106563716 - THE1C LTR MaLR 0 375 1 303 266 55 30 chr11 44220005 44220241 -106563312 - L1MDa LINE L1 -3770 2310 2096 778 270 89 60 chr11 44220241 44220689 -106562864 + LTR16B LTR ERVL 1 461 -3 303 266 55 30 chr11 44220689 44220745 -106562808 - L1MDa LINE L1 -3984 2096 2043 881 301 30 21 chr11 44221027 44221363 -106562190 - L1ME1 LINE L1 -6 6160 5822 402 305 14 60 chr11 44221374 44221745 -106561808 - L1MDa LINE L1 -4856 1224 906 233 308 71 5 chr11 44221865 44222063 -106561490 - L1MDa LINE L1 -5182 888 678 2214 98 10 10 chr11 44222357 44222664 -106560889 - AluY SINE Alu -4 307 1 1644 148 15 8 chr11 44222721 44222985 -106560568 - THE1A LTR MaLR 0 355 90 553 105 13 0 chr11 44223092 44223168 -106560385 - THE1A LTR MaLR -287 77 1 10926 95 5 48 chr11 44223168 44224820 -106558733 - THE1A-int LTR MaLR 0 1580 1 2472 110 6 3 chr11 44224820 44225174 -106558379 - THE1A LTR MaLR 0 355 1 1402 111 19 37 chr11 44226748 44227072 -106556481 + AluYb8 SINE Alu 1 318 0 3306 208 19 12 chr11 44227072 44227792 -106555761 - L1MD2 LINE L1 -72 6287 5563 771 294 189 21 chr11 44227851 44228270 -106555283 - L2 LINE L2 0 3313 2825 254 373 68 17 chr11 44228642 44228760 -106554793 + MIR SINE MIR 26 149 -113 446 147 21 21 chr11 44229439 44229534 -106554019 - AluSg/x SINE Alu -4 308 214 1471 197 7 7 chr11 44230194 44230478 -106553075 + AluSx SINE Alu 13 296 -16 1709 124 79 14 chr11 44230584 44230875 -106552678 + AluSg SINE Alu 1 310 0 236 30 90 30 chr11 44231152 44231219 -106552334 + (TATAA)n Simple_repeat Simple_repeat 3 73 0 2278 102 0 13 chr11 44231277 44231591 -106551962 - AluSx SINE Alu 0 312 3 24 91 0 0 chr11 44231773 44231839 -106551714 + AT_rich Low_complexity Low_complexity 1 66 0 2186 101 3 13 chr11 44231961 44232277 -106551276 + AluSq SINE Alu 1 313 0 217 264 83 41 chr11 44233428 44233549 -106550004 - MIR SINE MIR -37 225 100 566 286 59 20 chr11 44233679 44233882 -106549671 + MIR SINE MIR 52 262 0 991 156 6 0 chr11 44234044 44234204 -106549349 - MLT2B1 LTR ERVL -359 161 1 1962 196 16 0 chr11 44234242 44234609 -106548944 + MLT1B LTR MaLR 18 390 0 388 248 17 0 chr11 44234628 44234745 -106548808 - Charlie8 DNA MER1_type -2254 163 45 27 0 0 0 chr11 44235597 44235624 -106547929 + AT_rich Low_complexity Low_complexity 1 27 0 2050 191 64 12 chr11 44235652 44236075 -106547478 - MER65A LTR ERV1 0 445 1 2147 258 75 17 chr11 44236075 44237174 -106546379 - MER65A-int LTR ERV1 0 4871 3605 1888 226 126 42 chr11 44237186 44237213 -106546340 - MER65-int LTR ERV1 -939 5392 5369 1922 126 7 0 chr11 44237213 44237546 -106546007 + AluSc SINE Alu 1 335 0 1888 226 126 42 chr11 44237546 44238471 -106545082 - MER65-int LTR ERV1 -962 5369 4282 558 183 107 139 chr11 44238458 44238796 -106544757 - MER65-int LTR ERV1 -1913 4418 2729 * 1588 198 7 0 chr11 44238798 44239101 -106544452 + L1PB3 LINE L1 5847 6151 -3 1102 161 33 59 chr11 44239189 44239494 -106544059 - MER65-int LTR ERV1 -2572 4026 3730 852 180 10 40 chr11 44239573 44239773 -106543780 - MER65-int LTR ERV1 -2868 3730 3537 5914 187 69 90 chr11 44239856 44240471 -106543082 - MER65-int LTR ERV1 -2377 2494 1868 21 0 0 0 chr11 44240471 44240492 -106543061 + AT_rich Low_complexity Low_complexity 1 21 0 5914 187 69 90 chr11 44240492 44240521 -106543032 - MER65-int LTR ERV1 -3003 1868 1840 44 63 0 0 chr11 44240521 44240600 -106542953 + AT_rich Low_complexity Low_complexity 1 79 0 5914 187 69 90 chr11 44240600 44242756 -106540797 - MER65-int LTR ERV1 -3031 1840 417 2136 181 37 18 chr11 44243118 44243555 -106539998 - MER65A LTR ERV1 0 445 1 409 250 57 40 chr11 44243555 44243724 -106539829 + MER112 DNA MER1_type 74 248 -12 207 313 50 0 chr11 44243841 44243921 -106539632 - L2 LINE L2 -2454 860 777 239 254 0 17 chr11 44244085 44244144 -106539409 - L2 LINE L2 0 3313 3256 3397 330 142 25 chr11 44244270 44244387 -106539166 - L2 LINE L2 -103 3210 3108 2754 94 0 0 chr11 44244387 44244750 -106538803 + THE1B LTR MaLR 1 363 -1 3397 330 142 25 chr11 44244750 44247129 -106536424 - L2 LINE L2 -205 3108 425 270 153 0 0 chr11 44247132 44247191 -106536362 + (CAT)n Simple_repeat Simple_repeat 1 59 0 241 421 50 34 chr11 44248561 44248858 -106534695 - L2 LINE L2 -7 3265 2964 188 280 80 70 chr11 44249931 44250031 -106533522 - L2 LINE L2 -3 3269 3169 2216 96 0 7 chr11 44250185 44250518 -106533035 + AluY SINE Alu 1 311 0 206 379 42 21 chr11 44250518 44250613 -106532940 - L2 LINE L2 -223 3049 2953 241 337 35 100 chr11 44250911 44251400 -106532153 - L2 LINE L2 -687 2627 2171 1496 240 30 30 chr11 44251557 44251947 -106531606 - MLT1C LTR MaLR 0 467 78 1341 204 112 161 chr11 44251947 44252873 -106530680 - LTR1B LTR ERV1 0 1020 1 269 213 107 0 chr11 44252873 44252940 -106530613 - MLT1C LTR MaLR -385 82 8 325 368 8 0 chr11 44253419 44253536 -106530017 + MIR SINE MIR 66 183 -79 671 224 0 0 chr11 44253571 44253696 -106529857 + FLAM_A SINE Alu 1 125 -8 305 246 180 30 chr11 44255037 44255204 -106528349 - MLT1K LTR MaLR -33 555 364 207 224 0 41 chr11 44255553 44255602 -106527951 + CT-rich Low_complexity Low_complexity 3 49 0 29 0 0 0 chr11 44255644 44255673 -106527880 + AT_rich Low_complexity Low_complexity 1 29 0 459 349 50 9 chr11 44256332 44256550 -106527003 - MIR SINE MIR -34 228 2 247 278 86 18 chr11 44257765 44257878 -106525675 + MIR SINE MIR 73 191 -61 505 351 24 5 chr11 44257887 44258092 -106525461 - MIR SINE MIR 0 262 54 324 103 0 69 chr11 44258147 44258205 -106525348 + MADE1 DNA Mariner 14 67 -13 2035 126 0 7 chr11 44258647 44258941 -106524612 - AluSc SINE Alu -15 294 3 22 35 0 0 chr11 44260020 44260049 -106523504 + AT_rich Low_complexity Low_complexity 1 29 0 290 242 42 11 chr11 44260233 44260328 -106523225 + MER5C DNA MER1_type 57 154 -170 328 224 224 0 chr11 44260402 44260536 -106523017 + MER5C DNA MER1_type 161 324 0 220 39 0 0 chr11 44260669 44260695 -106522858 + (TG)n Simple_repeat Simple_repeat 1 26 0 383 118 0 15 chr11 44260695 44260763 -106522790 + (TA)n Simple_repeat Simple_repeat 1 67 0 373 228 331 0 chr11 44260853 44260980 -106522573 + MER5A DNA MER1_type 13 181 -8 363 284 0 11 chr11 44261727 44261822 -106521731 + MIR SINE MIR 31 124 -138 282 95 0 0 chr11 44261966 44262008 -106521545 + (TG)n Simple_repeat Simple_repeat 1 42 0 210 91 0 0 chr11 44262107 44262140 -106521413 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 880 223 31 31 chr11 44263298 44263522 -106520031 - MER58A DNA MER1_type 0 224 1 235 167 0 0 chr11 44263524 44263560 -106519993 + MIR SINE MIR 216 251 -11 2481 63 0 0 chr11 44263857 44264158 -106519395 + AluY SINE Alu 1 301 -10 3806 186 33 1 chr11 44264298 44265077 -106518476 - L1 LINE L1 -983 5163 4360 2743 162 88 15 chr11 44265086 44265677 -106517876 + L1MA8 LINE L1 5656 6289 -2 305 344 65 30 chr11 44265701 44265931 -106517622 + L1M4c LINE L1 1471 1708 -4834 234 284 23 11 chr11 44265946 44266034 -106517519 + L1M4c LINE L1 1838 1926 -4614 24 32 0 0 chr11 44266256 44266287 -106517266 + AT_rich Low_complexity Low_complexity 1 31 0 345 179 126 11 chr11 44266367 44266462 -106517091 + L1M4c LINE L1 2444 2549 -3991 32 26 0 0 chr11 44266472 44266511 -106517042 + AT_rich Low_complexity Low_complexity 1 39 0 389 301 153 38 chr11 44266969 44267334 -106516219 + L1M4c LINE L1 3167 3573 -2967 2252 162 2 31 chr11 44267596 44268223 -106515330 + L1PA16 LINE L1 5007 5606 -560 1876 223 166 47 chr11 44268238 44269019 -106514534 + LTR28 LTR ERV1 8 972 -48 543 257 13 20 chr11 44269020 44269172 -106514381 + LTR28 LTR ERV1 869 1019 -1 3134 164 9 4 chr11 44269172 44269721 -106513832 + L1PA16 LINE L1 5610 6161 -5 361 373 28 0 chr11 44269793 44269970 -106513583 + L1M4c LINE L1 3921 4102 -2438 2172 115 13 0 chr11 44270009 44270314 -106513239 - AluSc SINE Alu 0 309 1 351 0 0 0 chr11 44270383 44270422 -106513131 + (TG)n Simple_repeat Simple_repeat 2 40 0 536 263 86 41 chr11 44270453 44270791 -106512762 + L1M4c LINE L1 4244 4596 -1944 300 258 33 132 chr11 44270956 44271138 -106512415 + L1ME2 LINE L1 28 191 -5879 407 311 67 37 chr11 44271285 44271678 -106511875 + L1ME2 LINE L1 408 808 -5275 2254 249 158 16 chr11 44271805 44272382 -106511171 + L1ME2 LINE L1 3596 4090 -1990 342 0 0 0 chr11 44272382 44272420 -106511133 + (CA)n Simple_repeat Simple_repeat 1 38 0 2254 249 158 16 chr11 44272420 44272650 -106510903 + L1ME2 LINE L1 4090 4286 -1794 2209 59 3 21 chr11 44272650 44272989 -106510564 + AluY SINE Alu 1 334 0 2254 249 158 16 chr11 44272989 44273257 -106510296 + L1ME2 LINE L1 4286 4826 -1254 189 171 0 0 chr11 44273755 44273790 -106509763 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 195 100 0 0 chr11 44273790 44273820 -106509733 + (CA)n Simple_repeat Simple_repeat 2 31 0 731 237 117 59 chr11 44273912 44274270 -106509283 + L1ME2 LINE L1 5711 6089 -9 282 194 0 0 chr11 44274340 44274402 -106509151 + (CATA)n Simple_repeat Simple_repeat 3 64 0 5144 140 24 43 chr11 44274403 44275004 -106508549 + MER49 LTR ERV1 1 579 -344 1699 180 52 17 chr11 44275004 44275366 -106508187 + THE1C LTR MaLR 1 375 0 5144 140 24 43 chr11 44275366 44275702 -106507851 + MER49 LTR ERV1 579 920 -3 1480 199 4 4 chr11 44275702 44275983 -106507570 - AluJb SINE Alu -6 306 26 252 0 0 0 chr11 44276179 44276207 -106507346 + (CA)n Simple_repeat Simple_repeat 1 28 0 231 194 65 48 chr11 44277144 44277206 -106506347 - L2 LINE L2 0 3272 3210 311 237 32 11 chr11 44278019 44278112 -106505441 + CT-rich Low_complexity Low_complexity 1 95 0 555 78 0 0 chr11 44278660 44278737 -106504816 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 555 78 0 0 chr11 44279440 44279517 -106504036 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 281 329 57 32 chr11 44280685 44280843 -106502710 + MIR SINE MIR 26 187 -75 26 30 0 0 chr11 44282728 44282761 -106500792 + AT_rich Low_complexity Low_complexity 1 33 0 2036 183 30 30 chr11 44283289 44283721 -106499832 + MSTB1 LTR MaLR 1 432 0 1502 181 78 43 chr11 44284352 44284723 -106498830 - MLT1B LTR MaLR 0 390 7 290 249 69 110 chr11 44287127 44287300 -106496253 + MIR SINE MIR 50 215 -47 631 282 111 14 chr11 44287325 44287541 -106496012 + MIR SINE MIR 12 248 -14 570 268 29 14 chr11 44287554 44287692 -106495861 - MIR SINE MIR -110 152 13 212 337 223 0 chr11 44287845 44288011 -106495542 - MIR SINE MIR -58 204 2 1949 161 62 39 chr11 44288233 44288668 -106494885 + MER65A LTR ERV1 1 445 0 459 291 8 106 chr11 44288948 44289202 -106494351 + MLT1K LTR MaLR 19 247 -341 285 310 21 42 chr11 44289340 44289482 -106494071 + MLT1K LTR MaLR 448 586 -2 185 132 26 0 chr11 44290195 44290233 -106493320 + (TG)n Simple_repeat Simple_repeat 2 40 0 236 167 0 19 chr11 44290237 44290291 -106493262 + (TA)n Simple_repeat Simple_repeat 1 53 0 321 82 0 0 chr11 44290340 44290389 -106493164 + (CAAAA)n Simple_repeat Simple_repeat 4 52 0 368 339 23 0 chr11 44290852 44290982 -106492571 + MIR SINE MIR 20 152 -110 621 326 11 41 chr11 44291751 44292018 -106491535 - MIR SINE MIR 0 262 4 21 36 0 0 chr11 44292256 44292284 -106491269 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 44292348 44292369 -106491184 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 44292859 44292880 -106490673 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 825 101 8 0 chr11 44293286 44293415 -106490138 - Alu SINE Alu -6 304 175 223 286 135 95 chr11 44294155 44294407 -106489146 + MIR SINE MIR 1 262 0 504 250 101 0 chr11 44295023 44295171 -106488382 + MIR SINE MIR 38 200 -62 24 0 0 0 chr11 44295414 44295438 -106488115 + AT_rich Low_complexity Low_complexity 1 24 0 2229 93 10 0 chr11 44296186 44296487 -106487066 - AluY SINE Alu 0 311 8 196 295 42 74 chr11 44296607 44296702 -106486851 + L2 LINE L2 3137 3228 -44 192 355 0 16 chr11 44297025 44297087 -106486466 + MIR SINE MIR 20 80 -182 227 263 123 35 chr11 44297604 44297718 -106485835 - MLT1H LTR MaLR -424 125 2 316 279 114 77 chr11 44298194 44298491 -106485062 - MLT1H LTR MaLR -222 327 20 23 68 0 0 chr11 44298515 44298559 -106484994 + AT_rich Low_complexity Low_complexity 1 44 0 212 216 20 0 chr11 44300029 44300080 -106483473 + (TAA)n Simple_repeat Simple_repeat 1 52 0 319 301 121 54 chr11 44300096 44300335 -106483218 - MIR SINE MIR 0 262 8 22 70 0 0 chr11 44300486 44300529 -106483024 + AT_rich Low_complexity Low_complexity 1 43 0 283 298 138 70 chr11 44300730 44301159 -106482394 + L2 LINE L2 2855 3312 -1 368 326 122 0 chr11 44301448 44301620 -106481933 + LTR16C LTR ERVL 299 491 0 427 329 6 12 chr11 44301648 44301815 -106481738 + GA-rich Low_complexity Low_complexity 2 167 0 220 231 15 30 chr11 44301839 44301973 -106481580 + GA-rich Low_complexity Low_complexity 1 132 0 224 345 95 0 chr11 44302777 44302861 -106480692 + MIR SINE MIR 30 121 -87 183 42 0 0 chr11 44302928 44302952 -106480601 + (GGAGAA)n Simple_repeat Simple_repeat 5 28 0 33 43 0 0 chr11 44303033 44303080 -106480473 + AT_rich Low_complexity Low_complexity 1 47 0 298 306 166 6 chr11 44304214 44304371 -106479182 + MIR SINE MIR 53 234 -28 22 35 0 0 chr11 44304509 44304538 -106479015 + AT_rich Low_complexity Low_complexity 1 29 0 196 313 163 0 chr11 44304649 44304729 -106478824 - L2 LINE L2 -37 3276 3184 22 0 0 0 chr11 44305047 44305069 -106478484 + AT_rich Low_complexity Low_complexity 1 22 0 1007 354 15 21 chr11 44306404 44306932 -106476621 - ERVL LTR ERVL -1383 4271 3747 1107 196 30 113 chr11 44306976 44307374 -106476179 + MLT1A1 LTR MaLR 1 365 0 3460 223 3 0 chr11 44307375 44308058 -106475495 + MLT1A1-int LTR MaLR 2 686 -1049 315 320 49 8 chr11 44308069 44308191 -106475362 - ERVL LTR ERVL -1963 3033 2907 1054 343 51 28 chr11 44308233 44309050 -106474503 - ERVL LTR ERVL -2640 2845 2050 2387 57 0 0 chr11 44309210 44309514 -106474039 - AluY SINE Alu 0 304 1 1041 337 31 36 chr11 44309568 44310120 -106473433 - ERVL LTR ERVL -3974 1022 474 6723 111 11 5 chr11 44310317 44311348 -106472205 + L1MA2 LINE L1 5262 6298 -6 316 344 80 6 chr11 44311909 44312072 -106471481 - LTR16A LTR ERVL -154 296 122 256 394 48 12 chr11 44312724 44312889 -106470664 + MIR SINE MIR 50 220 -42 193 237 68 102 chr11 44313048 44313166 -106470387 + L2 LINE L2 3185 3298 -15 6609 32 0 0 chr11 44314173 44314999 -106468554 + L1PA3 LINE L1 5357 6182 0 193 258 16 141 chr11 44315202 44315330 -106468223 + MIR3 SINE MIR 4 115 -93 231 286 0 11 chr11 44315679 44315770 -106467783 - L1MC4 LINE L1 -1339 6703 6614 215 258 15 15 chr11 44315770 44315836 -106467717 + (CATATA)n Simple_repeat Simple_repeat 2 67 0 276 30 0 0 chr11 44316543 44316576 -106466977 + (TC)n Simple_repeat Simple_repeat 2 34 0 * 319 83 33 0 chr11 44316575 44316635 -106466918 + (TA)n Simple_repeat Simple_repeat 1 62 0 465 295 27 58 chr11 44316771 44317029 -106466524 + MIR SINE MIR 3 252 -10 277 330 0 0 chr11 44317355 44317446 -106466107 + (CATA)n Simple_repeat Simple_repeat 2 92 0 21 0 0 0 chr11 44317614 44317635 -106465918 + AT_rich Low_complexity Low_complexity 1 21 0 1867 128 31 3 chr11 44317684 44317974 -106465579 - AluSx SINE Alu -14 298 1 201 152 0 0 chr11 44318564 44318597 -106464956 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2722 302 101 25 chr11 44319396 44320647 -106462906 + L2 LINE L2 650 2005 -1309 354 23 0 0 chr11 44320647 44320690 -106462863 + (TG)n Simple_repeat Simple_repeat 2 44 0 2722 302 101 25 chr11 44320690 44320743 -106462810 + L2 LINE L2 2005 2053 -1261 314 298 39 0 chr11 44320806 44320910 -106462643 + L2 LINE L2 2218 2325 -989 284 200 12 0 chr11 44320984 44321064 -106462489 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 234 238 0 48 chr11 44321168 44321231 -106462322 - MLT1I LTR MaLR -58 351 292 323 194 14 0 chr11 44321277 44321349 -106462204 - MLT1D LTR MaLR 0 505 433 980 171 78 57 chr11 44321349 44321594 -106461959 + MER92B LTR ERV1 1 250 -386 712 191 6 87 chr11 44321593 44321776 -106461777 - MLT1E2 LTR MaLR -446 180 13 * 230 57 29 0 chr11 44321865 44321900 -106461653 + MLT1I LTR MaLR 98 133 -276 1421 252 33 14 chr11 44322144 44322505 -106461048 + MLT1F LTR MaLR 6 373 -169 270 177 0 81 chr11 44325676 44325738 -106457815 - L2 LINE L2 -5 3267 3211 303 278 107 83 chr11 44325840 44326092 -106457461 - MIR SINE MIR -4 258 1 642 334 73 16 chr11 44326589 44326957 -106456596 + MLT1I LTR MaLR 13 401 -8 236 157 39 0 chr11 44328430 44328481 -106455072 + CT-rich Low_complexity Low_complexity 3 55 0 189 344 115 21 chr11 44328886 44328982 -106454571 + MIR SINE MIR 35 139 -123 2030 199 122 0 chr11 44329090 44329516 -106454037 + MER66A LTR ERV1 1 478 0 6237 199 72 27 chr11 44329538 44331542 -106452011 + MER66A-int LTR ERV1 13 2167 -4509 * 13330 184 37 39 chr11 44331539 44332568 -106450985 + MER66A-int LTR ERV1 2338 3368 -3308 2131 108 4 0 chr11 44332568 44332847 -106450706 + AluSp SINE Alu 1 280 -33 291 28 0 0 chr11 44332847 44332883 -106450670 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 13330 184 37 39 chr11 44332883 44335660 -106447893 + MER66A-int LTR ERV1 3366 6238 -438 335 356 69 25 chr11 44335848 44336253 -106447300 - HAL1 LINE L1 -815 1692 1270 233 258 11 0 chr11 44336298 44336391 -106447162 + (TA)n Simple_repeat Simple_repeat 2 95 0 465 327 35 18 chr11 44336395 44336621 -106446932 - L1MEd LINE L1 -4971 1148 919 5184 191 34 20 chr11 44336630 44337885 -106445668 - L1MC1 LINE L1 -1 6612 5346 3108 264 56 14 chr11 44337887 44339163 -106444390 - L1MC1 LINE L1 -2433 3993 2664 15934 142 8 9 chr11 44339182 44345631 -106437922 - L1PA8 LINE L1 -17 6470 1 8449 181 103 57 chr11 44345648 44348178 -106435375 - L1MC1 LINE L1 -3915 2692 6 1366 197 17 0 chr11 44348169 44348468 -106435085 - L1MC3 LINE L1 -16 7769 7466 * 556 238 24 18 chr11 44348485 44348649 -106434904 - L1PB4 LINE L1 -22 6134 5970 905 161 0 0 chr11 44348749 44348904 -106434649 - L1PA15 LINE L1 -208 5957 5803 188 294 160 34 chr11 44349756 44349875 -106433678 - MIR SINE MIR -116 146 13 234 341 11 0 chr11 44350087 44350175 -106433378 - L2 LINE L2 0 3313 3225 537 269 35 56 chr11 44351584 44351781 -106431772 + MER20 DNA MER1_type 3 195 -24 2010 141 0 0 chr11 44351791 44352081 -106431472 + AluY SINE Alu 7 296 -15 2747 141 43 25 chr11 44352223 44352284 -106431269 + L1MA8 LINE L1 5722 5780 -511 342 67 0 0 chr11 44352284 44352329 -106431224 + (CA)n Simple_repeat Simple_repeat 2 46 0 2747 141 43 25 chr11 44352329 44352820 -106430733 + L1MA8 LINE L1 5780 6284 -7 180 111 0 0 chr11 44352820 44352847 -106430706 + (CATA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr11 44352851 44352874 -106430679 + AT_rich Low_complexity Low_complexity 1 23 0 183 389 83 0 chr11 44353243 44353351 -106430202 - L2 LINE L2 0 3272 3156 1314 235 40 75 chr11 44353442 44353965 -106429588 + MLT1D LTR MaLR 1 505 0 574 337 114 45 chr11 44354051 44354648 -106428905 - L2 LINE L2 -217 3055 2422 2343 96 3 7 chr11 44355707 44356010 -106427543 - AluSp SINE Alu -11 302 1 385 240 94 0 chr11 44356158 44356254 -106427299 + MIR SINE MIR 71 175 -87 2009 120 24 10 chr11 44356496 44356788 -106426765 - AluSq SINE Alu -17 296 1 830 276 5 0 chr11 44357194 44357404 -106426149 - MER58A DNA MER1_type -13 211 1 180 284 8 119 chr11 44357652 44357786 -106425767 - MER5C DNA MER1_type -159 165 47 1395 227 25 44 chr11 44359550 44359955 -106423598 + MLT2C1 LTR ERVL 1 397 0 510 297 79 0 chr11 44360708 44360873 -106422680 - MER115 DNA AcHobo -314 379 202 222 205 0 0 chr11 44361376 44361415 -106422138 + GA-rich Low_complexity Low_complexity 3 41 0 584 185 53 13 chr11 44362176 44362327 -106421226 - L1MA10 LINE L1 -2 6332 6176 244 283 42 42 chr11 44362547 44362713 -106420840 - MER41B LTR ERV1 -210 425 260 3307 172 65 3 chr11 44362914 44363601 -106419952 - L1MB1 LINE L1 -6 6183 5454 670 273 35 46 chr11 44363655 44363915 -106419638 - MIR SINE MIR 0 262 6 316 252 118 34 chr11 44363954 44364073 -106419480 + MIR3 SINE MIR 10 138 -70 514 252 76 0 chr11 44364645 44364776 -106418777 + MER58B DNA MER1_type 192 332 -9 304 316 77 46 chr11 44364766 44364914 -106418639 + MLT1I LTR MaLR 27 169 -240 * 2256 86 10 7 chr11 44364914 44365218 -106418335 - AluY SINE Alu -4 307 3 304 316 77 46 chr11 44365218 44365395 -106418158 + MLT1I LTR MaLR 169 362 -47 255 61 0 0 chr11 44365573 44365606 -106417947 + (TA)n Simple_repeat Simple_repeat 1 33 0 432 55 0 0 chr11 44365606 44365661 -106417892 + (TG)n Simple_repeat Simple_repeat 2 56 0 298 297 106 47 chr11 44365739 44365975 -106417578 + MIR SINE MIR 7 256 -6 213 39 0 0 chr11 44366419 44366445 -106417108 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 276 30 0 0 chr11 44366450 44366483 -106417070 + (CA)n Simple_repeat Simple_repeat 2 34 0 252 353 35 17 chr11 44366532 44366648 -106416905 - MIR3 SINE MIR -1 207 90 182 203 0 14 chr11 44367117 44367191 -106416362 + GA-rich Low_complexity Low_complexity 2 74 0 5199 140 22 17 chr11 44367833 44369451 -106414102 + L1PA13 LINE L1 4445 6156 -7 2322 59 21 3 chr11 44369765 44370055 -106413498 + AluY SINE Alu 1 295 -16 333 277 215 36 chr11 44370359 44370554 -106412999 + MIR SINE MIR 24 253 -9 188 296 111 64 chr11 44371949 44372121 -106411432 + MIR SINE MIR 32 211 -51 * 201 318 259 0 chr11 44372100 44372289 -106411264 - MIR SINE MIR -24 238 1 203 184 0 0 chr11 44372634 44372672 -106410881 + (TA)n Simple_repeat Simple_repeat 1 38 0 504 254 104 59 chr11 44373947 44374167 -106409386 - MIR SINE MIR -10 252 23 4353 130 62 12 chr11 44374319 44375067 -106408486 - LTR1 LTR ERV1 0 785 1 230 266 32 11 chr11 44376514 44376608 -106406945 + GA-rich Low_complexity Low_complexity 1 96 0 778 240 53 65 chr11 44376704 44377123 -106406430 + MLT1D LTR MaLR 31 467 0 230 286 130 26 chr11 44377213 44377367 -106406186 - L2 LINE L2 -125 3188 3019 233 338 96 7 chr11 44377419 44377555 -106405998 - MIR SINE MIR -74 188 41 1869 130 11 0 chr11 44378527 44378797 -106404756 + AluSg SINE Alu 1 273 -37 508 289 14 0 chr11 44378834 44378976 -106404577 - MIR SINE MIR 0 262 119 497 361 18 9 chr11 44379101 44379320 -106404233 + MIR SINE MIR 37 257 -5 1948 142 7 3 chr11 44379392 44379701 -106403852 - AluSq SINE Alu -3 310 1 236 281 55 31 chr11 44379844 44379972 -106403581 + MIR SINE MIR 132 262 0 278 299 49 62 chr11 44381019 44381163 -106402390 - MIR3 SINE MIR -65 143 2 243 256 86 61 chr11 44381166 44381295 -106402258 - MIR3 SINE MIR -37 171 39 407 328 125 48 chr11 44381448 44381783 -106401770 + L3 LINE CR1 1042 1402 -175 340 304 32 8 chr11 44381845 44381970 -106401583 + MIR3 SINE MIR 67 194 -14 201 389 35 18 chr11 44381989 44382102 -106401451 + L3 LINE CR1 1450 1564 -13 334 326 36 80 chr11 44382416 44382717 -106400836 - LTR67 LTR ERVL -169 388 101 7008 278 49 41 chr11 44382798 44386330 -106397223 + L1PA12 LINE L1 11 3585 -3999 4573 186 6 106 chr11 44386342 44387658 -106395895 + L1PA12 LINE L1 4434 5592 -1992 1895 135 52 3 chr11 44387658 44387947 -106395606 + AluSx SINE Alu 1 303 -9 4573 186 6 106 chr11 44387947 44388080 -106395473 + L1PA12 LINE L1 5592 5737 -1847 1512 165 0 7 chr11 44388126 44388399 -106395154 + L1PA15 LINE L1 5887 6157 -8 235 287 31 114 chr11 44388424 44388587 -106394966 - L2 LINE L2 -1270 2044 1908 2354 73 0 7 chr11 44388587 44388888 -106394665 - AluY SINE Alu -2 309 11 235 287 31 114 chr11 44388888 44388978 -106394575 - L2 LINE L2 -1406 1908 1812 1428 213 15 0 chr11 44389389 44389657 -106393896 - AluJo SINE Alu -9 303 32 2393 131 28 33 chr11 44389667 44390125 -106393428 - L1MA8 LINE L1 -6 6285 5830 212 211 0 0 chr11 44390591 44390629 -106392924 + L2 LINE L2 3235 3272 0 320 296 121 25 chr11 44391608 44391807 -106391746 + MIR SINE MIR 13 230 -32 219 276 17 0 chr11 44392212 44392270 -106391283 + L2 LINE L2 2584 2642 -672 306 0 0 0 chr11 44392425 44392459 -106391094 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1122 109 0 0 chr11 44392459 44392615 -106390938 - L1PA5 LINE L1 -18 6136 5981 7579 49 15 3 chr11 44392615 44393610 -106389943 + L1M LINE L1 4342 5350 -812 1440 295 37 22 chr11 44393739 44394417 -106389136 - L1ME3A LINE L1 -203 6247 5560 763 275 113 39 chr11 44394461 44395003 -106388550 - L1ME3A LINE L1 -913 5513 4932 1127 264 71 45 chr11 44395003 44395382 -106388171 - MLT1D LTR MaLR 0 505 109 2390 38 14 3 chr11 44395382 44395674 -106387879 + AluY SINE Alu 1 295 -16 1127 264 71 45 chr11 44395674 44395786 -106387767 - MLT1D LTR MaLR -396 109 1 496 137 60 6 chr11 44395922 44396090 -106387463 + (TA)n Simple_repeat Simple_repeat 1 177 0 922 295 52 24 chr11 44396161 44396841 -106386712 - L1MCa LINE L1 -4622 1985 1088 3151 248 87 43 chr11 44396849 44398746 -106384807 + L1ME1 LINE L1 3794 5769 -397 905 233 49 17 chr11 44398794 44399187 -106384366 - MER54B LTR ERVL -111 682 236 718 169 8 0 chr11 44399185 44399309 -106384244 - MER54B LTR ERVL -661 132 8 * 1240 242 21 15 chr11 44399319 44399658 -106383895 + L1ME1 LINE L1 5781 6121 -45 1709 258 98 19 chr11 44399689 44400785 -106382768 + L1ME2 LINE L1 4383 5553 -609 1094 263 80 29 chr11 44400790 44401238 -106382315 + L1ME2 LINE L1 5604 6074 -90 3255 18 0 3 chr11 44401879 44402259 -106381294 - L1PA3 LINE L1 -4 6151 5773 1642 169 0 7 chr11 44403148 44403432 -106380121 + AluSp SINE Alu 2 283 -30 328 297 0 0 chr11 44403457 44403548 -106380005 - L1MC4 LINE L1 -1339 6703 6613 222 213 0 0 chr11 44404194 44404241 -106379312 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 195 42 0 0 chr11 44405433 44405457 -106378096 + (TC)n Simple_repeat Simple_repeat 2 25 0 1682 260 65 28 chr11 44405643 44406212 -106377341 - MLT1E LTR MaLR -3 590 1 26 30 0 0 chr11 44406273 44406306 -106377247 + AT_rich Low_complexity Low_complexity 1 33 0 278 146 0 0 chr11 44406401 44406442 -106377111 - MER47A DNA MER2_type -1 365 325 1791 169 116 72 chr11 44406458 44406983 -106376570 + LTR10A LTR ERV1 1 548 -61 1606 144 0 0 chr11 44406991 44407234 -106376319 - MER47A DNA MER2_type -81 285 43 2097 120 3 16 chr11 44407334 44407642 -106375911 + AluSg SINE Alu 1 304 -6 22 0 0 0 chr11 44407687 44407709 -106375844 + AT_rich Low_complexity Low_complexity 1 22 0 233 226 62 85 chr11 44407912 44408089 -106375464 - L1MC4a LINE L1 -1578 6230 6058 558 231 94 68 chr11 44408137 44408444 -106375109 - L1MC4a LINE L1 -1847 5961 5647 666 309 67 14 chr11 44408598 44408821 -106374732 - LTR16A LTR ERVL -94 356 122 1090 363 41 34 chr11 44409019 44409974 -106373579 - ERVL LTR ERVL -381 5383 4422 509 307 49 53 chr11 44410252 44410496 -106373057 - MIR SINE MIR -18 244 2 185 355 60 81 chr11 44411585 44411917 -106371636 - L2 LINE L2 -42 3230 2906 1061 196 25 68 chr11 44412184 44412465 -106371088 + L1MA9 LINE L1 6008 6276 -36 239 239 84 48 chr11 44412605 44412772 -106370781 + L1ME4a LINE L1 5762 5934 -187 1880 161 0 7 chr11 44413228 44413532 -106370021 - AluSx SINE Alu -10 302 1 420 260 29 69 chr11 44414006 44414179 -106369374 - L2 LINE L2 -3 3310 3145 266 250 0 100 chr11 44414201 44414321 -106369232 + MER104 DNA Tc2 65 172 -8 270 211 118 0 chr11 44414702 44414778 -106368775 - MIR SINE MIR -54 208 124 1705 209 51 57 chr11 44415382 44415890 -106367663 + MLT1D LTR MaLR 1 505 0 647 304 42 14 chr11 44415898 44416115 -106367438 + MIR SINE MIR 36 258 -4 883 88 7 7 chr11 44416334 44416470 -106367083 + (GAAA)n Simple_repeat Simple_repeat 1 136 0 21 0 0 0 chr11 44418267 44418288 -106365265 + AT_rich Low_complexity Low_complexity 1 21 0 193 271 200 29 chr11 44418288 44418428 -106365125 + L2 LINE L2 3150 3313 0 188 375 52 0 chr11 44419173 44419269 -106364284 + MIR SINE MIR 32 132 -130 3176 189 20 3 chr11 44419341 44419935 -106363618 + MER6A DNA MER2_type 2 605 0 314 299 119 15 chr11 44421224 44421358 -106362195 + MIR SINE MIR 3 150 -112 336 372 101 12 chr11 44421811 44422069 -106361484 - L2 LINE L2 -222 3091 2811 1540 100 134 180 chr11 44422191 44422477 -106361076 - MSTA LTR MaLR 0 428 169 1910 147 3 0 chr11 44422477 44422763 -106360790 - AluSx SINE Alu -25 287 1 1540 100 134 180 chr11 44422763 44422925 -106360628 - MSTA LTR MaLR -259 169 1 248 375 31 0 chr11 44423209 44423305 -106360248 + L2 LINE L2 3169 3267 -5 282 306 33 56 chr11 44423335 44423515 -106360038 - MIR SINE MIR -28 234 59 214 222 0 32 chr11 44424715 44424778 -106358775 + T-rich Low_complexity Low_complexity 3 63 0 414 134 0 0 chr11 44426263 44426330 -106357223 + (TA)n Simple_repeat Simple_repeat 1 67 0 301 294 32 8 chr11 44426429 44426555 -106356998 + (CATA)n Simple_repeat Simple_repeat 3 131 0 445 211 24 106 chr11 44426697 44426820 -106356733 - MLT1I LTR MaLR -15 611 278 553 254 15 0 chr11 44427525 44427659 -106355894 + MLT1J2 LTR MaLR 47 182 -268 1027 231 14 9 chr11 44428117 44428338 -106355215 + MER58A DNA MER1_type 1 222 -2 279 292 95 42 chr11 44428664 44428832 -106354721 + MIR SINE MIR 86 262 0 23 0 0 0 chr11 44429005 44429028 -106354525 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr11 44429218 44429251 -106354302 + AT_rich Low_complexity Low_complexity 1 33 0 3215 118 2 0 chr11 44429256 44429729 -106353824 - L1P LINE L1 -1131 5015 4542 26 0 0 0 chr11 44429735 44429761 -106353792 + AT_rich Low_complexity Low_complexity 1 26 0 245 180 0 16 chr11 44429813 44429874 -106353679 + (TA)n Simple_repeat Simple_repeat 1 60 0 22 0 0 0 chr11 44430469 44430491 -106353062 + AT_rich Low_complexity Low_complexity 1 22 0 358 331 16 0 chr11 44432165 44432286 -106351267 + MLT1K LTR MaLR 160 282 -306 226 298 0 32 chr11 44432723 44432817 -106350736 + (CATA)n Simple_repeat Simple_repeat 4 94 0 267 31 0 0 chr11 44433247 44433279 -106350274 + (CA)n Simple_repeat Simple_repeat 1 32 0 1870 159 27 57 chr11 44433781 44434222 -106349331 - L1MA7 LINE L1 -2 6289 5862 184 316 84 76 chr11 44434477 44434834 -106348719 + L2 LINE L2 2211 2570 -744 2221 93 17 0 chr11 44435010 44435301 -106348252 - AluSq SINE Alu -16 297 2 191 321 24 12 chr11 44438670 44438754 -106344799 - MER5A DNA MER1_type -78 111 27 265 284 32 53 chr11 44438820 44438915 -106344638 + L2 LINE L2 3180 3272 0 1783 189 100 85 chr11 44440162 44440670 -106342883 - LTR53 LTR ERVL -3 516 1 812 262 86 0 chr11 44441852 44442073 -106341480 - L1ME1 LINE L1 -11 6155 5916 277 293 131 10 chr11 44442125 44442224 -106341329 - MER94 DNA DNA -10 124 14 315 0 0 0 chr11 44442254 44442289 -106341264 + (CA)n Simple_repeat Simple_repeat 2 36 0 239 266 29 93 chr11 44442608 44442747 -106340806 + L3 LINE CR1 1433 1562 -15 269 286 150 0 chr11 44442821 44442961 -106340592 + MIR SINE MIR 102 262 0 1092 313 41 33 chr11 44443203 44443663 -106339890 - MER115 DNA AcHobo -9 684 221 477 297 35 30 chr11 44443917 44444119 -106339434 + MLT1J2 LTR MaLR 92 294 -156 312 70 0 0 chr11 44444250 44444293 -106339260 + (TG)n Simple_repeat Simple_repeat 2 44 0 483 69 0 0 chr11 44444396 44444468 -106339085 + (TAAA)n Simple_repeat Simple_repeat 4 75 0 225 154 0 0 chr11 44444476 44444515 -106339038 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 1487 212 55 23 chr11 44444999 44445292 -106338261 - MLT1A1 LTR MaLR -8 357 50 2198 128 3 0 chr11 44445292 44445597 -106337956 - AluSq SINE Alu -7 306 1 1487 212 55 23 chr11 44445597 44445648 -106337905 - MLT1A1 LTR MaLR -315 50 2 22 35 0 0 chr11 44446200 44446229 -106337324 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr11 44446268 44446291 -106337262 + (A)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chr11 44447212 44447241 -106336312 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr11 44447280 44447304 -106336249 + (A)n Simple_repeat Simple_repeat 1 24 0 1190 311 38 17 chr11 44448264 44448682 -106334871 - LTR16A LTR ERVL -8 442 16 280 312 72 8 chr11 44449404 44449529 -106334024 - MIR SINE MIR -128 134 2 402 258 75 38 chr11 44449761 44449947 -106333606 - L2 LINE L2 -8 3305 3113 314 286 248 12 chr11 44450038 44450199 -106333354 + MIR SINE MIR 64 262 0 204 97 0 0 chr11 44450764 44450795 -106332758 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 225 0 0 0 chr11 44451122 44451147 -106332406 + (T)n Simple_repeat Simple_repeat 1 25 0 5031 157 53 2 chr11 44451410 44452302 -106331251 + L1MC1 LINE L1 232 1168 -5258 436 237 94 31 chr11 44452301 44452525 -106331028 - L1M4 LINE L1 -1662 4484 4247 * 3579 104 6 0 chr11 44452533 44453033 -106330520 - L1PA11 LINE L1 -1 6173 5671 1066 78 0 0 chr11 44453035 44453198 -106330355 + L1PA5 LINE L1 6003 6165 0 4273 182 32 22 chr11 44453199 44453949 -106329604 + L1MA7 LINE L1 1179 1920 -4651 411 56 0 0 chr11 44453949 44454003 -106329550 + (CA)n Simple_repeat Simple_repeat 1 54 0 4273 182 32 22 chr11 44454003 44454393 -106329160 + L1MA7 LINE L1 1920 6452 -119 2121 132 65 11 chr11 44454394 44454749 -106328804 - THE1C LTR MaLR -1 374 1 9888 128 22 16 chr11 44454749 44456320 -106327233 - THE1C-int LTR MaLR 0 1580 2 1311 159 5 0 chr11 44456321 44456522 -106327031 - THE1C LTR MaLR 0 375 174 1328 146 9 9 chr11 44456623 44456842 -106326711 - THE1C LTR MaLR -155 220 2 475 188 0 26 chr11 44456842 44456959 -106326594 + L1MA8 LINE L1 6167 6280 -11 999 148 132 11 chr11 44457005 44457371 -106326182 + L1MC1 LINE L1 1448 1947 -4479 5025 255 62 18 chr11 44457374 44459243 -106324310 + L1MC1 LINE L1 2726 4512 -2101 1569 97 0 23 chr11 44459243 44459460 -106324093 + AluY SINE Alu 1 212 -99 5025 255 62 18 chr11 44459460 44461220 -106322333 + L1MC1 LINE L1 4512 6613 0 1060 286 109 55 chr11 44461392 44461861 -106321692 - L2 LINE L2 0 3313 2820 324 355 60 14 chr11 44461995 44462212 -106321341 - MIR SINE MIR -30 232 6 216 0 0 0 chr11 44462335 44462359 -106321194 + (TG)n Simple_repeat Simple_repeat 2 25 0 325 279 57 95 chr11 44462406 44462668 -106320885 + MIR SINE MIR 3 254 -8 790 333 132 21 chr11 44463701 44464323 -106319230 - L2 LINE L2 -375 2939 2249 22 56 0 0 chr11 44465530 44465566 -106317987 + AT_rich Low_complexity Low_complexity 1 36 0 1532 205 23 3 chr11 44466530 44466832 -106316721 - AluJo SINE Alu -2 310 3 483 209 88 40 chr11 44466858 44467006 -106316547 - MER20 DNA MER1_type -1 218 64 337 39 39 0 chr11 44467008 44467059 -106316494 + (CAAAAA)n Simple_repeat Simple_repeat 3 55 0 395 268 0 0 chr11 44518669 44518766 -106264787 - L1MD2 LINE L1 -477 5882 5786 835 234 45 0 chr11 44518768 44518969 -106264584 + MLT2B1 LTR ERVL 1 210 -310 712 199 9 109 chr11 44518989 44519148 -106264405 + MLT2B1 LTR ERVL 331 466 -54 180 77 0 0 chr11 44519148 44519174 -106264379 + (TG)n Simple_repeat Simple_repeat 2 27 0 712 199 9 109 chr11 44519174 44519225 -106264328 + MLT2B1 LTR ERVL 466 520 0 1804 231 9 5 chr11 44519226 44519658 -106263895 - L1MD2 LINE L1 -572 5787 5354 406 296 71 50 chr11 44519659 44519939 -106263614 + L1M4 LINE L1 3176 3461 -2685 1438 228 24 12 chr11 44519947 44520281 -106263272 + L1M4 LINE L1 5423 5760 -418 1055 238 55 97 chr11 44520279 44520859 -106262694 - L1MD2 LINE L1 -777 5369 4813 * 2023 134 13 0 chr11 44520859 44521166 -106262387 - AluY SINE Alu 0 311 1 1055 238 55 97 chr11 44521166 44521185 -106262368 - L1MD2 LINE L1 -1333 4813 4795 * 1220 271 79 24 chr11 44521169 44522222 -106261331 + L1MEc LINE L1 1826 2904 -3311 2477 65 0 3 chr11 44522222 44522531 -106261022 + AluY SINE Alu 1 308 -3 1220 271 79 24 chr11 44522531 44522585 -106260968 + L1MEc LINE L1 2904 2954 -3261 877 313 24 12 chr11 44522672 44523086 -106260467 + L1MEc LINE L1 3592 4013 -2202 7746 17 0 3 chr11 44523086 44524302 -106259251 + L1PA3 LINE L1 4939 6151 -4 6254 135 0 18 chr11 44524417 44525456 -106258097 + HERVH LTR ERV1 1976 2995 -4718 985 120 7 0 chr11 44525435 44525585 -106257968 + HERVH LTR ERV1 3140 3290 -4423 * 989 149 6 6 chr11 44525575 44525736 -106257817 + HERVH LTR ERV1 3492 3652 -4061 * 4629 61 3 8 chr11 44525728 44526339 -106257214 + HERVH LTR ERV1 7106 7713 0 1501 118 74 118 chr11 44526339 44526744 -106256809 + LTR7 LTR ERV1 1 387 -63 414 0 0 0 chr11 44526761 44526807 -106256746 + (CA)n Simple_repeat Simple_repeat 1 46 0 197 413 31 22 chr11 44526808 44527038 -106256515 + MIR SINE MIR 19 252 -10 489 294 61 40 chr11 44527198 44527426 -106256127 + L2 LINE L2 1764 1996 -1318 1428 218 11 0 chr11 44527540 44527824 -106255729 + AluJo SINE Alu 12 298 -14 243 268 0 0 chr11 44527916 44527972 -106255581 - L2 LINE L2 -6 3307 3252 * 528 343 93 45 chr11 44527971 44528414 -106255139 + L2 LINE L2 2128 2591 -723 463 163 12 0 chr11 44528446 44528532 -106255021 + L1MA9 LINE L1 6173 6259 -53 356 217 11 0 chr11 44528543 44528635 -106254918 + (CA)n Simple_repeat Simple_repeat 2 94 0 1162 231 85 0 chr11 44528693 44528987 -106254566 - MER5C DNA MER1_type -5 319 1 1388 161 18 18 chr11 44529032 44529860 -106253693 + L1MC1 LINE L1 5429 6320 -13 306 0 0 0 chr11 44529860 44529894 -106253659 + (TG)n Simple_repeat Simple_repeat 2 35 0 341 216 14 0 chr11 44530182 44530256 -106253297 + MER116 DNA Mariner 1 75 -5 198 0 0 0 chr11 44531639 44531661 -106251892 + (TTTTTA)n Simple_repeat Simple_repeat 3 24 0 1521 150 8 0 chr11 44531662 44531908 -106251645 - L1PB4 LINE L1 -3 6153 5906 722 305 55 9 chr11 44532076 44532420 -106251133 - L1PB4 LINE L1 -15 6141 5782 246 174 0 0 chr11 44532503 44532549 -106251004 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1882 138 14 34 chr11 44532549 44532898 -106250655 - L1PB4 LINE L1 -365 5791 5450 747 198 69 230 chr11 44533001 44533375 -106250178 + MLT1E LTR MaLR 271 520 -73 2148 97 7 3 chr11 44533375 44533664 -106249889 - AluSp SINE Alu -21 292 3 747 198 69 230 chr11 44533664 44533723 -106249830 + MLT1E LTR MaLR 520 587 -6 22 35 0 0 chr11 44534417 44534446 -106249107 + AT_rich Low_complexity Low_complexity 1 29 0 704 275 94 48 chr11 44534599 44535389 -106248164 + L1MEc LINE L1 1108 1933 -4463 476 244 129 4 chr11 44535449 44535674 -106247879 + L1MEc LINE L1 2025 2277 -4119 6540 108 23 24 chr11 44535674 44536474 -106247079 + L1MA1 LINE L1 5257 6057 -245 2637 19 7 0 chr11 44536474 44536783 -106246770 + AluYa5 SINE Alu 1 311 0 6540 108 23 24 chr11 44536783 44537029 -106246524 + L1MA1 LINE L1 6057 6302 0 24 32 0 0 chr11 44537029 44537060 -106246493 + AT_rich Low_complexity Low_complexity 1 31 0 1409 77 0 6 chr11 44537105 44537286 -106246267 - AluY SINE Alu -131 180 1 1777 291 130 10 chr11 44537360 44538659 -106244894 + L1MEc LINE L1 2385 3839 -2376 2300 91 0 3 chr11 44538782 44539102 -106244451 - L1PA10 LINE L1 -5 6163 5845 3215 103 39 0 chr11 44539104 44539697 -106243856 + L1P4 LINE L1 5141 5754 -414 1790 185 0 0 chr11 44539779 44540077 -106243476 - AluJo SINE Alu -14 298 1 27 29 0 0 chr11 44540081 44540115 -106243438 + AT_rich Low_complexity Low_complexity 1 34 0 234 297 0 0 chr11 44540115 44540189 -106243364 + L1ME3 LINE L1 6089 6162 0 286 378 16 42 chr11 44540223 44540416 -106243137 - MLT1I LTR MaLR -108 301 114 1206 178 5 0 chr11 44540921 44541118 -106242435 - MER58A DNA MER1_type -15 209 12 287 325 47 35 chr11 44541143 44541312 -106242241 - MIR3 SINE MIR -11 197 27 265 295 24 72 chr11 44541664 44541871 -106241682 - L1MEc LINE L1 -5132 1129 933 291 281 48 30 chr11 44541916 44542083 -106241470 - L1MEc LINE L1 -5186 884 715 2114 179 14 43 chr11 44542824 44543265 -106240288 + MSTA LTR MaLR 1 428 0 387 321 179 24 chr11 44543567 44543907 -106239646 - LTR16A1 LTR ERVL -10 447 55 1746 170 168 11 chr11 44545450 44545820 -106237733 - MSTA LTR MaLR 0 428 1 8827 150 13 38 chr11 44545820 44546848 -106236705 - MSTA-int LTR MaLR 0 1580 605 2092 138 0 0 chr11 44546848 44547153 -106236400 - AluSx SINE Alu -7 305 1 8827 150 13 38 chr11 44547153 44547741 -106235812 - MSTA-int LTR MaLR -975 605 4 1643 159 136 60 chr11 44547745 44548142 -106235411 - MSTA LTR MaLR -1 427 1 5919 103 12 11 chr11 44548944 44549845 -106233708 - L1PA13 LINE L1 -4 6159 5258 733 265 81 27 chr11 44550053 44550351 -106233202 + L1ME3A LINE L1 5847 6160 -10 276 374 69 38 chr11 44551017 44551148 -106232405 - L2 LINE L2 -5 3267 3133 475 284 39 65 chr11 44553157 44553312 -106230241 - LTR33 LTR ERVL -336 185 35 2402 83 0 3 chr11 44553312 44553624 -106229929 + AluY SINE Alu 1 311 0 705 237 40 0 chr11 44553966 44554118 -106229435 - FRAM SINE Alu -8 158 1 483 277 53 10 chr11 44554962 44555167 -106228386 - MLT1J2 LTR MaLR -163 283 68 210 118 0 0 chr11 44555401 44555435 -106228118 + (CA)n Simple_repeat Simple_repeat 2 35 0 1447 194 110 42 chr11 44555495 44555903 -106227650 + MER63B DNA MER1_type 1 436 0 23 0 0 0 chr11 44556060 44556083 -106227470 + AT_rich Low_complexity Low_complexity 1 23 0 278 311 16 114 chr11 44556739 44556993 -106226560 + MLT1I LTR MaLR 59 287 -122 923 178 0 0 chr11 44557425 44557588 -106225965 + L1PB4 LINE L1 5994 6156 0 227 222 0 0 chr11 44557630 44557675 -106225878 - L1MC4 LINE L1 -1340 6702 6658 1551 101 0 5 chr11 44557676 44557884 -106225669 - AluSg/x SINE Alu -18 292 86 609 115 0 0 chr11 44557886 44557973 -106225580 + AluS SINE Alu 11 97 -216 7119 49 11 1 chr11 44558479 44560154 -106223399 + L1PA5 LINE L1 4465 6154 0 306 261 90 96 chr11 44560677 44560865 -106222688 - L1MEd LINE L1 -4885 1234 1048 1211 191 64 69 chr11 44560901 44561293 -106222260 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr11 44561892 44561913 -106221640 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 44562868 44562896 -106220657 + AT_rich Low_complexity Low_complexity 1 28 0 213 175 0 0 chr11 44563366 44563406 -106220147 + A-rich Low_complexity Low_complexity 1 40 0 1924 181 17 50 chr11 44563821 44564224 -106219329 + MLT1B LTR MaLR 1 390 0 24 0 0 0 chr11 44564504 44564528 -106219025 + AT_rich Low_complexity Low_complexity 1 24 0 497 306 41 12 chr11 44564687 44564857 -106218696 - MIR SINE MIR -82 180 6 1282 265 103 33 chr11 44565052 44565819 -106217734 + L1ME1 LINE L1 3951 4771 -1375 252 191 0 15 chr11 44565819 44565887 -106217666 + (TTAA)n Simple_repeat Simple_repeat 1 67 0 228 200 22 0 chr11 44565899 44565944 -106217609 - L1M4 LINE L1 -1381 4765 4720 8943 215 40 15 chr11 44565995 44567237 -106216316 + L1MA7 LINE L1 2238 3564 -2582 1578 179 29 4 chr11 44567237 44567535 -106216018 + AluSx SINE Alu 1 305 0 8943 215 40 15 chr11 44567535 44568563 -106214990 + L1MA7 LINE L1 3564 4565 -1581 1934 198 50 19 chr11 44568563 44568982 -106214571 + MSTB1 LTR MaLR 1 432 0 2677 219 10 3 chr11 44568986 44569571 -106213982 + MSTB1-int LTR MaLR 5 593 -1058 2797 181 66 13 chr11 44569573 44569889 -106213664 + L1MA7 LINE L1 5459 5757 -534 1636 181 3 32 chr11 44569889 44570198 -106213355 + AluJb SINE Alu 1 300 -12 2797 181 66 13 chr11 44570198 44570561 -106212992 + L1MA7 LINE L1 5757 6280 -11 2129 269 51 38 chr11 44570596 44571649 -106211904 + L1ME1 LINE L1 5040 6108 -58 230 209 27 27 chr11 44571652 44571762 -106211791 + (CATA)n Simple_repeat Simple_repeat 2 111 0 2661 288 129 44 chr11 44571804 44573649 -106209904 + L1M4 LINE L1 2217 4341 -1805 1976 133 0 20 chr11 44573649 44573942 -106209611 + AluSx SINE Alu 3 289 -23 2661 288 129 44 chr11 44573942 44574653 -106208900 + L1M4 LINE L1 4341 4990 -1156 313 301 0 19 chr11 44575122 44575225 -106208328 + GA-rich Low_complexity Low_complexity 4 104 0 26 50 0 0 chr11 44575350 44575390 -106208163 + AT_rich Low_complexity Low_complexity 1 40 0 1479 129 16 65 chr11 44575509 44575719 -106207834 - L1MA4 LINE L1 0 6300 6108 2318 57 0 17 chr11 44575719 44576019 -106207534 - AluY SINE Alu -16 295 1 1479 129 16 65 chr11 44576019 44576118 -106207435 - L1MA4 LINE L1 -192 6108 6006 225 349 0 0 chr11 44576462 44576525 -106207028 + L3 LINE CR1 1513 1575 -2 541 307 47 7 chr11 44577504 44577654 -106205899 + MIR3 SINE MIR 26 181 -27 259 306 9 18 chr11 44578313 44578424 -106205129 + LTR33 LTR ERVL 1 110 -411 255 409 0 0 chr11 44578580 44578690 -106204863 + LTR33 LTR ERVL 301 410 -111 1114 84 0 0 chr11 44578701 44578843 -106204710 - AluSp SINE Alu -19 294 153 618 322 47 44 chr11 44578983 44579300 -106204253 - MLT1K LTR MaLR -201 387 70 514 332 85 7 chr11 44579633 44580093 -106203460 + L2 LINE L2 2763 3270 -2 24 96 0 0 chr11 44580212 44580285 -106203268 + AT_rich Low_complexity Low_complexity 1 73 0 532 297 26 51 chr11 44580698 44580962 -106202591 + MIR SINE MIR 10 262 0 311 335 19 31 chr11 44581166 44581327 -106202226 + MIR SINE MIR 104 262 0 224 282 106 0 chr11 44582351 44582436 -106201117 - L2 LINE L2 -15 3298 3205 361 325 49 16 chr11 44582466 44582589 -106200964 + L2 LINE L2 3138 3264 -8 278 349 24 75 chr11 44583175 44583470 -106200083 - L2 LINE L2 0 3272 2993 505 368 81 10 chr11 44583484 44584081 -106199472 + L2 LINE L2 2615 3256 -16 1001 235 0 0 chr11 44584204 44584400 -106199153 - MLT1B LTR MaLR -8 382 187 303 253 53 0 chr11 44584403 44584478 -106199075 - MER2 DNA MER2_type 0 345 267 1034 138 122 5 chr11 44584560 44584749 -106198804 - MER2 DNA MER2_type -134 211 1 869 191 67 6 chr11 44584749 44584925 -106198628 - MLT1B LTR MaLR -201 189 3 540 296 50 86 chr11 44585092 44585568 -106197985 - MLT1J LTR MaLR -36 475 17 220 136 15 15 chr11 44585912 44585978 -106197575 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 202 367 78 0 chr11 44586068 44586158 -106197395 + MIR SINE MIR 86 182 -80 476 351 0 26 chr11 44586258 44586449 -106197104 + MIR SINE MIR 66 251 -11 666 255 62 56 chr11 44587565 44587922 -106195631 - L1MC4 LINE L1 -541 7501 7143 310 207 17 0 chr11 44589882 44589940 -106193613 - L2 LINE L2 0 3272 3214 1012 252 64 19 chr11 44590224 44590585 -106192968 - L1ME2 LINE L1 -213 5951 5575 224 312 170 0 chr11 44590600 44590741 -106192812 + MIR SINE MIR 98 262 0 23 0 0 0 chr11 44590757 44590780 -106192773 + AT_rich Low_complexity Low_complexity 1 23 0 273 254 15 15 chr11 44590894 44590961 -106192592 - MIR3 SINE MIR -34 174 108 606 343 58 0 chr11 44591001 44591208 -106192345 - MIR SINE MIR -42 220 2 349 311 63 32 chr11 44591944 44592171 -106191382 - MLT1I LTR MaLR -181 228 1 418 326 76 0 chr11 44592291 44592463 -106191090 - MIR SINE MIR -12 250 66 387 350 64 0 chr11 44592777 44592934 -106190619 - MIR SINE MIR -89 173 7 403 315 27 20 chr11 44593395 44593544 -106190009 - L2 LINE L2 -2 3311 3162 2357 77 0 0 chr11 44593593 44593893 -106189660 + AluY SINE Alu 10 309 -2 222 214 57 0 chr11 44593900 44593970 -106189583 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 304 330 35 26 chr11 44594006 44594121 -106189432 - L2 LINE L2 -240 3073 2958 605 284 214 12 chr11 44594176 44594578 -106188975 + L2 LINE L2 2209 2691 -623 359 192 13 0 chr11 44594648 44594726 -106188827 + L1MA7 LINE L1 5976 6054 -237 399 333 7 14 chr11 44594755 44594902 -106188651 + L2 LINE L2 2799 2944 -370 229 308 90 0 chr11 44594933 44595011 -106188542 + L2 LINE L2 3225 3309 -4 2018 103 0 0 chr11 44595013 44595284 -106188269 - AluSx SINE Alu -41 271 1 210 288 50 93 chr11 44595520 44595659 -106187894 + MIR3 SINE MIR 13 145 -63 182 310 42 78 chr11 44596807 44596949 -106186604 + MIR3 SINE MIR 10 146 -62 26 0 0 0 chr11 44597128 44597154 -106186399 + AT_rich Low_complexity Low_complexity 1 26 0 1999 133 14 0 chr11 44597254 44597561 -106185992 - AluSx SINE Alu 0 311 1 274 379 65 30 chr11 44598130 44598362 -106185191 + L2 LINE L2 3032 3271 -1 198 167 0 0 chr11 44598860 44598896 -106184657 + (CATA)n Simple_repeat Simple_repeat 1 36 0 257 241 0 11 chr11 44599848 44599935 -106183618 + (TA)n Simple_repeat Simple_repeat 1 86 0 1639 196 22 30 chr11 44600152 44600520 -106183033 + MLT1A1 LTR MaLR 1 365 0 866 217 24 16 chr11 44600581 44600789 -106182764 + MLT1D LTR MaLR 218 445 -60 715 260 29 6 chr11 44600857 44601030 -106182523 - MLT1D LTR MaLR -328 177 1 390 307 128 24 chr11 44601065 44601316 -106182237 - L1MC/D LINE L1 -2258 5550 5274 402 283 67 84 chr11 44601365 44601768 -106181785 - L1MC/D LINE L1 -993 5153 4758 348 308 43 54 chr11 44601905 44602181 -106181372 - L1MC/D LINE L1 -3625 2521 2249 464 266 30 18 chr11 44603570 44603739 -106179814 - LTR37B LTR ERV1 -18 450 280 3046 102 20 13 chr11 44603747 44604198 -106179355 - L1PA10 LINE L1 -31 6137 5684 4010 147 24 4 chr11 44604225 44604900 -106178653 + L1PA16 LINE L1 5476 6163 -3 683 214 14 101 chr11 44604902 44605178 -106178375 - LTR37B LTR ERV1 -216 252 1 2150 113 0 25 chr11 44605853 44606172 -106177381 - AluSq SINE Alu -2 311 1 267 281 29 101 chr11 44606175 44606314 -106177239 + MIR3 SINE MIR 47 175 -33 716 231 102 22 chr11 44606342 44606645 -106176908 - LTR16A LTR ERVL -68 382 16 1724 128 4 0 chr11 44607157 44607423 -106176130 + L1PA13 LINE L1 5897 6163 0 2374 89 0 0 chr11 44608010 44608314 -106175239 - AluY SINE Alu -7 304 1 252 331 84 16 chr11 44608361 44608545 -106175008 - MIR SINE MIR -50 212 19 374 323 101 6 chr11 44608740 44608898 -106174655 - MIR SINE MIR -58 150 20 2075 164 90 10 chr11 44609697 44610099 -106173454 + Tigger2a DNA MER2_type 1 434 0 2356 203 31 71 chr11 44610115 44610752 -106172801 + LTR9 LTR ERV1 1 612 0 27 29 0 0 chr11 44611058 44611092 -106172461 + AT_rich Low_complexity Low_complexity 1 34 0 359 336 52 48 chr11 44611121 44611410 -106172143 - L2 LINE L2 -4 3309 3020 513 332 35 17 chr11 44611780 44612012 -106171541 + MLT2E LTR ERVL 346 581 -47 1870 156 41 3 chr11 44612017 44612332 -106171221 + L1P3 LINE L1 8 334 -6127 9453 173 4 30 chr11 44612459 44614307 -106169246 + L1P3 LINE L1 1267 3067 -3394 434 302 93 20 chr11 44615060 44615497 -106168056 + L1MEd LINE L1 1044 1508 -4621 227 194 30 30 chr11 44615581 44615648 -106167905 + MLT1J LTR MaLR 97 163 -348 521 328 28 35 chr11 44616176 44616384 -106167169 + L1MEc LINE L1 1194 1402 -4994 2434 90 0 0 chr11 44616384 44616695 -106166858 + AluY SINE Alu 1 311 0 521 328 28 35 chr11 44616695 44617087 -106166466 + L1MEc LINE L1 1402 1790 -4606 2808 113 88 4 chr11 44617210 44617677 -106165876 + LTR1 LTR ERV1 280 785 0 401 248 177 7 chr11 44617841 44617982 -106165571 - MLT1I LTR MaLR -155 254 90 282 302 9 0 chr11 44618167 44618273 -106165280 - MER103 DNA DNA 0 166 60 3052 208 15 5 chr11 44618725 44619388 -106164165 - L1MB4 LINE L1 -6 6174 5505 274 410 0 0 chr11 44619991 44620096 -106163457 + MIR SINE MIR 1 105 -157 214 170 0 64 chr11 44620110 44620157 -106163396 - L2 LINE L2 0 3272 3229 449 236 57 8 chr11 44620270 44620393 -106163160 + MIR SINE MIR 120 248 -14 327 281 5 0 chr11 44620395 44620493 -106163060 - MIR SINE MIR -74 134 34 312 111 0 0 chr11 44620526 44620580 -106162973 + (GA)n Simple_repeat Simple_repeat 1 54 0 302 232 0 42 chr11 44621156 44621251 -106162302 + L1MC4 LINE L1 6614 6704 -1338 214 207 17 0 chr11 44621251 44621309 -106162244 + (TA)n Simple_repeat Simple_repeat 2 60 0 766 328 78 38 chr11 44622359 44622891 -106160662 + L1MEc LINE L1 36 441 -5676 3213 159 20 6 chr11 44622891 44623433 -106160120 + MER41C LTR ERV1 5 554 0 766 328 78 38 chr11 44623433 44623786 -106159767 + L1MEc LINE L1 441 778 -5339 45 45 0 0 chr11 44623869 44623935 -106159618 + AT_rich Low_complexity Low_complexity 1 66 0 338 226 22 29 chr11 44623935 44624072 -106159481 + L1MEc LINE L1 1038 1173 -5223 230 351 14 0 chr11 44624121 44624195 -106159358 - MLT1K LTR MaLR -347 241 167 767 313 78 17 chr11 44624214 44624508 -106159045 - MLT1I LTR MaLR -2 407 96 1401 131 14 0 chr11 44624567 44624788 -106158765 + LTR1 LTR ERV1 29 252 -533 286 333 23 0 chr11 44624932 44625061 -106158492 - MER94 DNA DNA -2 132 1 2174 107 0 10 chr11 44625833 44626133 -106157420 + AluSq SINE Alu 17 313 0 200 222 167 0 chr11 44626790 44626844 -106156709 + MIR SINE MIR 200 262 0 355 323 112 36 chr11 44626887 44627110 -106156443 + MIR SINE MIR 11 250 -12 422 240 10 10 chr11 44627550 44627654 -106155899 + LTR16C LTR ERVL 386 489 -2 2185 222 55 71 chr11 44627840 44628501 -106155052 - MLT1E1 LTR MaLR -2 652 3 286 281 129 7 chr11 44628753 44628892 -106154661 + MIR SINE MIR 95 250 -12 518 303 88 34 chr11 44629466 44629704 -106153849 - MIR SINE MIR -5 257 7 237 328 69 23 chr11 44630842 44630973 -106152580 + MIR SINE MIR 59 195 -67 553 13 26 13 chr11 44631417 44631494 -106152059 - AluY SINE Alu -11 298 221 421 347 85 5 chr11 44632206 44632405 -106151148 + MIR SINE MIR 3 217 -45 279 311 99 51 chr11 44632688 44633042 -106150511 + MLT1I LTR MaLR 39 409 0 1734 275 28 16 chr11 44633368 44633873 -106149680 - LTR40a LTR ERVL 0 519 9 443 324 45 0 chr11 44634036 44634215 -106149338 - HERVL68 LTR ERVL -66 2971 2785 262 273 91 30 chr11 44634191 44634290 -106149263 - MER70-int LTR ERVL -349 4674 4570 * 2146 116 0 3 chr11 44635514 44635807 -106147746 - AluSg SINE Alu -18 292 1 2057 185 69 5 chr11 44636092 44636482 -106147071 - MSTA LTR MaLR 0 428 14 31 0 0 0 chr11 44636930 44636961 -106146592 + AT_rich Low_complexity Low_complexity 1 31 0 313 224 83 70 chr11 44637434 44637590 -106145963 + MIR SINE MIR 104 261 -1 236 328 0 0 chr11 44638069 44638136 -106145417 + (TATG)n Simple_repeat Simple_repeat 1 67 0 1300 204 71 96 chr11 44638742 44639251 -106144302 + LTR54B LTR ERV1 3 498 0 1493 212 80 9 chr11 44641669 44641994 -106141559 - MER7A DNA MER2_type 0 346 1 410 255 129 34 chr11 44643683 44643946 -106139607 - LTR43 LTR ERV1 -124 478 191 362 300 27 0 chr11 44644437 44644547 -106139006 + MER5A DNA MER1_type 1 113 -76 330 305 102 25 chr11 44644634 44644752 -106138801 - L2 LINE L2 -5 3267 3141 201 262 0 66 chr11 44645701 44645762 -106137791 + L2 LINE L2 3257 3313 0 300 313 30 69 chr11 44646009 44646140 -106137413 + L2 LINE L2 3182 3307 -6 419 338 28 0 chr11 44646143 44646288 -106137265 - LTR16C LTR ERVL -3 488 340 551 253 89 39 chr11 44646636 44646917 -106136636 - L1MDa LINE L1 -6194 346 52 632 280 47 14 chr11 44647790 44648004 -106135549 + MIR SINE MIR 39 259 -3 2012 152 27 38 chr11 44648365 44648733 -106134820 + THE1B LTR MaLR 1 364 0 11203 110 6 0 chr11 44648733 44650303 -106133250 + THE1B-int LTR MaLR 1 1580 0 1979 168 27 41 chr11 44650303 44650672 -106132881 + THE1B LTR MaLR 1 364 0 314 277 12 0 chr11 44650802 44650885 -106132668 + MIR3 SINE MIR 122 205 -3 377 244 62 56 chr11 44651174 44651334 -106132219 - MIR SINE MIR -55 207 47 308 278 111 0 chr11 44651678 44651786 -106131767 - MIR SINE MIR -43 219 100 367 317 22 97 chr11 44652555 44652782 -106130771 + L2 LINE L2 3040 3249 -23 1193 347 34 0 chr11 44652865 44653283 -106130270 + LTR16A LTR ERVL 17 448 -2 752 293 55 61 chr11 44653800 44654258 -106129295 - LTR16A1 LTR ERVL -2 455 1 1479 325 60 7 chr11 44654275 44655081 -106128472 - L2 LINE L2 -4 3309 2452 1788 129 0 0 chr11 44655204 44655482 -106128071 - L1PA13 LINE L1 -4 6159 5882 3229 296 134 27 chr11 44655896 44657520 -106126033 - L2 LINE L2 -867 2447 651 385 161 25 34 chr11 44657809 44657927 -106125626 + CT-rich Low_complexity Low_complexity 1 117 0 1768 207 29 0 chr11 44659006 44659383 -106124170 + MLT1B LTR MaLR 3 390 0 2049 122 35 0 chr11 44659723 44660009 -106123544 + AluSx SINE Alu 3 298 -14 305 375 0 0 chr11 44660147 44660259 -106123294 - L2 LINE L2 -12 3301 3190 180 0 0 0 chr11 44660307 44660327 -106123226 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2186 123 3 0 chr11 44660341 44660650 -106122903 + AluSp SINE Alu 1 310 -3 390 246 57 8 chr11 44660679 44660801 -106122752 + L2 LINE L2 3182 3309 -4 369 295 74 50 chr11 44661042 44661300 -106122253 - L1ME4a LINE L1 -25 6096 5833 1834 183 0 3 chr11 44661306 44661618 -106121935 + AluSx SINE Alu 1 311 -1 1068 122 0 0 chr11 44661835 44661991 -106121562 - L1PA13 LINE L1 -14 6149 5994 2106 103 3 0 chr11 44661991 44662282 -106121271 + L1PA13 LINE L1 5683 5974 -194 354 172 152 20 chr11 44662301 44662400 -106121153 - L1MA7 LINE L1 -22 6269 6158 957 324 31 55 chr11 44662589 44662664 -106120889 - L2 LINE L2 0 3313 3238 207 88 0 0 chr11 44662664 44662698 -106120855 + (TTAA)n Simple_repeat Simple_repeat 2 35 0 957 324 31 55 chr11 44662698 44663134 -106120419 - L2 LINE L2 -75 3238 2814 506 322 25 34 chr11 44663151 44663387 -106120166 - L2 LINE L2 -1849 1465 1232 278 347 91 0 chr11 44663956 44664077 -106119476 + MER117 DNA MER1_type 11 142 -55 21 0 0 0 chr11 44664305 44664326 -106119227 + AT_rich Low_complexity Low_complexity 1 21 0 960 386 49 17 chr11 44664446 44665155 -106118398 - L2 LINE L2 -406 2908 2177 290 315 77 52 chr11 44665575 44665899 -106117654 + L2 LINE L2 1870 2201 -1113 29 60 0 0 chr11 44666716 44666766 -106116787 + AT_rich Low_complexity Low_complexity 1 50 0 200 171 65 16 chr11 44667996 44668119 -106115434 + (TA)n Simple_repeat Simple_repeat 2 130 0 404 140 58 18 chr11 44668136 44668307 -106115246 + (TA)n Simple_repeat Simple_repeat 2 179 0 345 183 44 50 chr11 44668375 44668555 -106114998 + (TA)n Simple_repeat Simple_repeat 1 179 0 202 261 0 0 chr11 44668685 44668731 -106114822 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 459 335 72 48 chr11 44669696 44669989 -106113564 - MERVL LTR ERVL -693 5071 4772 397 319 112 24 chr11 44670301 44670750 -106112803 - MERVL LTR ERVL -1279 4206 3861 539 368 48 31 chr11 44671490 44671966 -106111587 - MERVL LTR ERVL -2641 3123 2640 23 33 0 0 chr11 44671998 44672028 -106111525 + AT_rich Low_complexity Low_complexity 1 30 0 356 291 103 36 chr11 44672238 44672517 -106111036 + LTR16B LTR ERVL 148 463 0 642 128 0 0 chr11 44672915 44673017 -106110536 - L1PA15 LINE L1 -2 6163 6062 1102 313 119 20 chr11 44673023 44673762 -106109791 - HAL1 LINE L1 -1593 914 103 2357 140 3 6 chr11 44674456 44674821 -106108732 + THE1B LTR MaLR 1 364 0 15129 105 4 12 chr11 44675291 44677601 -106105952 + L1PA7 LINE L1 2292 4583 -1563 6677 72 8 1 chr11 44677601 44678925 -106104628 + L1PA7 LINE L1 4809 6138 -16 273 89 0 0 chr11 44678927 44678972 -106104581 + (TA)n Simple_repeat Simple_repeat 1 45 0 850 263 17 13 chr11 44679437 44679669 -106103884 + L1M4 LINE L1 20 252 -6290 1951 197 13 26 chr11 44679674 44680060 -106103493 + MSTB LTR MaLR 46 426 0 6992 196 24 12 chr11 44680060 44681426 -106102127 + MSTB-int LTR MaLR 1 1383 -268 2146 134 0 3 chr11 44681608 44681900 -106101653 - AluSx SINE Alu -21 291 1 2298 162 10 31 chr11 44681900 44682307 -106101246 + MSTB LTR MaLR 29 426 0 492 212 26 0 chr11 44682310 44682423 -106101130 + L1M4 LINE L1 4439 4554 -1592 7752 20 0 0 chr11 44682473 44683555 -106099998 + L1P1 LINE L1 4481 5562 -593 6846 13 1 0 chr11 44683555 44684333 -106099220 + L1PA2 LINE L1 5373 6154 -1 191 81 54 0 chr11 44685355 44685392 -106098161 + A-rich Low_complexity Low_complexity 2 40 0 1519 172 0 0 chr11 44685686 44685930 -106097623 + AluJo SINE Alu 57 300 -12 1578 122 36 0 chr11 44685931 44686152 -106097401 + AluSg/x SINE Alu 66 294 -16 7436 196 18 6 chr11 44686154 44687749 -106095804 + L1 LINE L1 2778 4392 -1754 966 142 0 0 chr11 44687749 44687890 -106095663 + AluJb SINE Alu 160 300 -12 752 168 7 0 chr11 44687971 44688126 -106095427 + L1 LINE L1 4397 4552 -1594 315 329 34 27 chr11 44738127 44738273 -106045280 - MIR3 SINE MIR -52 156 10 1638 177 77 32 chr11 44738898 44739241 -106044312 + MLT2C1 LTR ERVL 3 366 -31 272 70 23 0 chr11 44739241 44739284 -106044269 + (CA)n Simple_repeat Simple_repeat 2 45 0 1638 177 77 32 chr11 44739284 44739318 -106044235 + MLT2C1 LTR ERVL 366 397 0 799 245 215 11 chr11 44739369 44739736 -106043817 - MLT1J2 LTR MaLR -8 442 1 26 74 0 0 chr11 44741853 44741907 -106041646 + AT_rich Low_complexity Low_complexity 1 54 0 2125 129 7 0 chr11 44742242 44742544 -106041009 + AluSx SINE Alu 1 304 -8 374 172 0 0 chr11 44743326 44743390 -106040163 - Alu SINE Alu 0 300 237 193 308 64 0 chr11 44743398 44743476 -106040077 + MIR SINE MIR 124 206 -56 3795 112 31 15 chr11 44743744 44743844 -106039709 - L1PA13 LINE L1 -1 6162 6065 2546 95 11 19 chr11 44743844 44744222 -106039331 - THE1C LTR MaLR 0 375 1 3795 112 31 15 chr11 44744222 44744726 -106038827 - L1PA13 LINE L1 -98 6065 5548 1357 133 20 5 chr11 44745561 44745764 -106037789 - AluSg/x SINE Alu -8 304 99 225 0 0 0 chr11 44746047 44746072 -106037481 + (TC)n Simple_repeat Simple_repeat 2 26 0 336 24 0 0 chr11 44746074 44746115 -106037438 + (CA)n Simple_repeat Simple_repeat 1 41 0 200 114 29 0 chr11 44746328 44746363 -106037190 + (TTG)n Simple_repeat Simple_repeat 1 36 0 941 217 22 60 chr11 44746367 44746634 -106036919 + MLT1A1 LTR MaLR 4 260 -105 407 102 17 0 chr11 44746768 44746827 -106036726 + MLT1A1 LTR MaLR 314 373 -1 212 241 0 35 chr11 44747025 44747083 -106036470 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 4856 211 69 97 chr11 44747932 44749417 -106034136 + L1MC3 LINE L1 5476 6859 -926 5721 165 19 14 chr11 44749447 44751055 -106032498 - L1MA8 LINE L1 -5 7307 5690 2316 138 3 35 chr11 44751055 44751431 -106032122 + THE1B LTR MaLR 1 364 0 1312 103 5 0 chr11 44751431 44751616 -106031937 + THE1B-int LTR MaLR 1 186 -1394 1867 155 3 14 chr11 44751616 44751913 -106031640 + AluSq SINE Alu 1 294 -19 390 324 0 0 chr11 44752420 44752528 -106031025 + MIR SINE MIR 46 153 -109 1028 250 81 18 chr11 44752547 44752819 -106030734 - L1MC4a LINE L1 -917 6891 6603 2438 244 70 21 chr11 44752847 44752937 -106030616 + L1MC4a LINE L1 6942 7026 -782 186 43 0 0 chr11 44752937 44752960 -106030593 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2438 244 70 21 chr11 44752960 44753744 -106029809 + L1MC4a LINE L1 7026 7808 0 185 62 0 31 chr11 44753858 44753890 -106029663 + (TTA)n Simple_repeat Simple_repeat 1 31 0 802 187 113 30 chr11 44754334 44754535 -106029018 + MLT1C LTR MaLR 1 218 -249 1791 87 31 8 chr11 44754535 44754789 -106028764 + MLT2A1 LTR ERVL 1 260 -184 18455 56 19 1 chr11 44754794 44757077 -106026476 + HERVL LTR ERVL 3317 5640 -14 1010 212 39 12 chr11 44757077 44757091 -106026462 + MLT1C LTR MaLR 200 212 -255 2868 87 36 25 chr11 44757091 44757530 -106026023 + MLT2A1 LTR ERVL 1 444 0 1010 212 39 12 chr11 44757530 44757774 -106025779 + MLT1C LTR MaLR 212 465 -2 1388 123 10 5 chr11 44758454 44758658 -106024895 + AluSx SINE Alu 36 240 -72 4105 102 3 3 chr11 44758758 44759324 -106024229 + THE1B-int LTR MaLR 233 798 -782 2664 84 0 0 chr11 44759323 44759668 -106023885 + THE1B-int LTR MaLR 1233 1577 -3 * 2244 144 3 35 chr11 44759671 44760047 -106023506 + THE1B LTR MaLR 1 364 0 215 245 0 0 chr11 44760100 44760153 -106023400 + T-rich Low_complexity Low_complexity 5 57 0 8138 237 72 24 chr11 44760199 44763235 -106020318 - L1MA8 LINE L1 -1709 5458 2475 1958 139 41 35 chr11 44763235 44763602 -106019951 + THE1C LTR MaLR 5 373 -2 8138 237 72 24 chr11 44763602 44764532 -106019021 - L1MA8 LINE L1 -4692 2475 1591 1532 205 50 40 chr11 44765445 44765704 -106017849 + L1MC3 LINE L1 6870 7136 -649 1608 215 3 3 chr11 44765704 44766006 -106017547 - AluJb SINE Alu -10 302 1 1532 205 50 40 chr11 44766006 44766170 -106017383 + L1MC3 LINE L1 7136 7297 -488 198 0 0 0 chr11 44766192 44766214 -106017339 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 5645 43 20 0 chr11 44766220 44766911 -106016642 - L1PA5 LINE L1 -2 6152 5448 23 0 0 0 chr11 44767014 44767037 -106016516 + AT_rich Low_complexity Low_complexity 1 23 0 191 36 36 0 chr11 44767193 44767221 -106016332 + (TAA)n Simple_repeat Simple_repeat 3 31 0 285 305 92 15 chr11 44767796 44767927 -106015626 + MIR SINE MIR 78 218 -44 240 314 57 48 chr11 44767907 44768012 -106015541 - MIR SINE MIR -156 106 1 * 198 267 139 50 chr11 44768172 44768273 -106015280 + L2 LINE L2 3201 3310 -3 813 93 0 47 chr11 44768495 44768624 -106014929 + L1PA8 LINE L1 6037 6159 -13 391 340 148 27 chr11 44768751 44769083 -106014470 + L2 LINE L2 2714 3091 -181 213 318 0 0 chr11 44769280 44769346 -106014207 + CT-rich Low_complexity Low_complexity 3 68 0 263 353 43 0 chr11 44769783 44769899 -106013654 - MIR3 SINE MIR -2 206 86 29 47 0 0 chr11 44770811 44770854 -106012699 + AT_rich Low_complexity Low_complexity 1 43 0 29 0 0 0 chr11 44770967 44770996 -106012557 + AT_rich Low_complexity Low_complexity 1 29 0 280 294 126 45 chr11 44771087 44771373 -106012180 + L1ME LINE L1 5350 5658 -463 3098 214 28 0 chr11 44771531 44772142 -106011411 + L1PA15 LINE L1 1 628 -6159 2654 215 28 14 chr11 44772122 44772685 -106010868 + L1PA15 LINE L1 1153 1723 -5064 * 13010 224 18 19 chr11 44772705 44775437 -106008116 + L1PA15 LINE L1 1839 4571 -2226 1271 203 45 31 chr11 44775437 44775723 -106007830 + AluJo SINE Alu 3 292 -20 13010 224 18 19 chr11 44775723 44775761 -106007792 + L1PA15 LINE L1 4571 4608 -2189 4453 119 41 46 chr11 44775761 44776544 -106007009 - MER4E LTR ERV1 0 779 1 13010 224 18 19 chr11 44776544 44776869 -106006684 + L1PA15 LINE L1 4608 4932 -1865 1976 122 25 69 chr11 44776869 44776998 -106006555 + THE1C LTR MaLR 1 134 -241 2050 156 0 6 chr11 44776998 44777313 -106006240 - AluSq SINE Alu 0 313 1 1976 122 25 69 chr11 44777313 44777575 -106005978 + THE1C LTR MaLR 134 375 0 13010 224 18 19 chr11 44777575 44777976 -106005577 + L1PA15 LINE L1 4932 5322 -1475 2047 160 45 27 chr11 44777976 44778511 -106005042 + MLT2A2 LTR ERVL 1 545 -9 5477 144 6 6 chr11 44778511 44780014 -106003539 + L1PA15 LINE L1 5309 6808 -8 195 325 123 26 chr11 44780368 44780522 -106003031 + MIR SINE MIR 79 247 -15 1167 287 60 57 chr11 44781913 44782566 -106000987 - L2 LINE L2 0 3313 2668 240 226 0 0 chr11 44783385 44783447 -106000106 + (ATG)n Simple_repeat Simple_repeat 2 63 0 706 211 14 14 chr11 44783757 44783904 -105999649 - MER5A DNA MER1_type -40 149 3 234 288 144 38 chr11 44785601 44785733 -105997820 - MIR SINE MIR -115 147 2 308 285 52 64 chr11 44785923 44786095 -105997458 - MIR SINE MIR -87 175 6 246 301 136 10 chr11 44787108 44787211 -105996342 + MIR SINE MIR 141 256 -6 24 0 0 0 chr11 44787408 44787432 -105996121 + AT_rich Low_complexity Low_complexity 1 24 0 307 316 6 63 chr11 44787574 44787732 -105995821 + MER5B DNA MER1_type 30 178 0 709 224 98 17 chr11 44788222 44788457 -105995096 - L1ME LINE L1 -515 5647 5372 1117 225 103 13 chr11 44788466 44788777 -105994776 + L1ME3 LINE L1 5615 5953 -209 516 274 0 0 chr11 44788860 44788984 -105994569 + MER45A DNA AcHobo 55 178 0 647 253 6 19 chr11 44788988 44789150 -105994403 + L1ME3 LINE L1 5996 6155 -7 669 323 36 5 chr11 44789298 44789521 -105994032 - MIR SINE MIR -1 261 32 196 277 34 118 chr11 44790924 44791043 -105992510 - MIR3 SINE MIR -5 203 95 297 287 15 7 chr11 44791502 44791638 -105991915 + (TA)n Simple_repeat Simple_repeat 1 137 0 396 365 51 19 chr11 44792400 44792614 -105990939 - MIR SINE MIR -30 232 12 1696 182 70 14 chr11 44793178 44793547 -105990006 - MLT1B LTR MaLR 0 390 1 306 368 41 15 chr11 44793831 44794097 -105989456 + MLT1K LTR MaLR 311 583 -5 230 302 0 16 chr11 44794248 44794311 -105989242 - L2 LINE L2 -1 3271 3210 501 263 52 33 chr11 44794311 44794524 -105989029 + MER106A DNA MER1_type 5 221 -15 279 273 94 75 chr11 44795022 44795289 -105988264 - MLT1L LTR MaLR -199 416 145 368 246 8 0 chr11 44795392 44795514 -105988039 + (TA)n Simple_repeat Simple_repeat 2 124 0 1768 197 139 17 chr11 44795890 44796356 -105987197 - MER63 DNA MER1_type -1 1060 538 3139 200 12 5 chr11 44796437 44797087 -105986466 + L1MD1 LINE L1 5588 6242 0 189 344 109 10 chr11 44797203 44797395 -105986158 + L2 LINE L2 2148 2358 -956 240 301 0 12 chr11 44797398 44797481 -105986072 + L1ME1 LINE L1 4873 4954 -1192 383 252 28 56 chr11 44797505 44798323 -105985230 + L1ME1 LINE L1 4942 5880 -286 1822 185 10 0 chr11 44798323 44798625 -105984928 + AluJo SINE Alu 1 305 -7 383 252 28 56 chr11 44798625 44798905 -105984648 + L1ME1 LINE L1 5880 6166 0 749 269 35 10 chr11 44800048 44800280 -105983273 + MLT1H LTR MaLR 28 244 -305 1154 207 46 25 chr11 44800310 44800633 -105982920 + L1MA3 LINE L1 5609 5938 -367 3664 71 2 2 chr11 44800368 44800845 -105982708 + L1PA6 LINE L1 5673 6149 -5 407 313 183 32 chr11 44801244 44801736 -105981817 + MLT1K LTR MaLR 5 570 -18 281 312 7 71 chr11 44802810 44802951 -105980602 - MIR SINE MIR -75 187 56 245 265 59 0 chr11 44802980 44803048 -105980505 - L2 LINE L2 0 3272 3201 1517 233 37 27 chr11 44804371 44804886 -105978667 - Charlie1b DNA MER1_type -3 520 1 238 333 85 54 chr11 44805010 44805400 -105978153 + L2 LINE L2 2912 3313 0 406 311 37 22 chr11 44805426 44805561 -105977992 + MIR SINE MIR 20 156 -106 548 337 98 34 chr11 44805564 44806042 -105977511 - L2 LINE L2 -1 3312 2804 238 346 0 19 chr11 44806052 44806156 -105977397 + MIR SINE MIR 159 260 -2 234 0 0 0 chr11 44806394 44806420 -105977133 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 40259 40 23 1 chr11 44806423 44812416 -105971137 - L1PA2 LINE L1 -25 6130 1 860 292 35 16 chr11 44813017 44813329 -105970224 - MLT1I LTR MaLR -29 380 63 312 336 65 70 chr11 44813439 44813560 -105969993 + MIR SINE MIR 28 149 -113 3964 152 27 4 chr11 44813560 44814253 -105969300 + L1PA16 LINE L1 5452 6160 -6 312 336 65 70 chr11 44814253 44814360 -105969193 + MIR SINE MIR 149 255 -7 203 358 133 28 chr11 44814363 44814715 -105968838 + L2 LINE L2 1789 2177 -1137 384 298 147 22 chr11 44814722 44814947 -105968606 + MIR SINE MIR 5 257 -5 443 340 19 12 chr11 44815203 44815459 -105968094 + MIR SINE MIR 1 258 -4 21 0 0 0 chr11 44817182 44817203 -105966350 + AT_rich Low_complexity Low_complexity 1 21 0 434 339 60 18 chr11 44817481 44817699 -105965854 + L1MC/D LINE L1 5510 5736 -2072 21 36 0 0 chr11 44817703 44817731 -105965822 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 44818317 44818339 -105965214 + AT_rich Low_complexity Low_complexity 1 22 0 236 301 168 0 chr11 44818630 44818743 -105964810 - L2 LINE L2 -1 3312 3181 1545 203 3 10 chr11 44818772 44819083 -105964470 + AluJo SINE Alu 1 309 -3 1138 234 45 48 chr11 44820725 44821123 -105962430 + MLT2C1 LTR ERVL 1 397 0 28 91 0 0 chr11 44821320 44821397 -105962156 + AT_rich Low_complexity Low_complexity 1 77 0 1284 157 9 0 chr11 44821577 44821794 -105961759 - AluJo SINE Alu -10 302 84 22 0 0 0 chr11 44823003 44823025 -105960528 + AT_rich Low_complexity Low_complexity 1 22 0 314 281 9 129 chr11 44823624 44823834 -105959719 + L2 LINE L2 3088 3272 0 190 237 0 0 chr11 44823910 44823948 -105959605 + MIR SINE MIR 157 194 -68 382 263 11 11 chr11 44825063 44825158 -105958395 - MIR3 SINE MIR -54 154 60 304 261 51 70 chr11 44825268 44825425 -105958128 + MIR SINE MIR 69 222 -40 373 318 97 13 chr11 44826800 44826954 -105956599 + MER5B DNA MER1_type 2 168 -10 189 107 0 0 chr11 44827139 44827167 -105956386 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 348 293 91 24 chr11 44827299 44827507 -105956046 - L2 LINE L2 -167 3105 2884 2411 195 30 3 chr11 44827534 44828120 -105955433 - MER39 LTR ERV1 0 707 22 4106 212 48 85 chr11 44828587 44830156 -105953397 + L1M4 LINE L1 17 1527 -5015 210 236 0 0 chr11 44830159 44830214 -105953339 + (CA)n Simple_repeat Simple_repeat 2 56 0 427 223 10 19 chr11 44830214 44830317 -105953236 - Tigger7 DNA MER2_type 0 2487 2386 5838 62 1 15 chr11 44830318 44831137 -105952416 - L1PA4 LINE L1 -3 6152 5345 326 349 31 8 chr11 44831491 44831620 -105951933 + MIR SINE MIR 45 176 -86 437 326 126 33 chr11 44831701 44832121 -105951432 - L3 LINE CR1 -785 792 334 22 0 0 0 chr11 44832163 44832185 -105951368 + AT_rich Low_complexity Low_complexity 1 22 0 342 338 29 7 chr11 44833285 44833421 -105950132 - MIR SINE MIR -91 171 33 366 371 81 31 chr11 44833529 44833850 -105949703 + L2 LINE L2 2936 3272 0 243 146 0 0 chr11 44833911 44833952 -105949601 + (TA)n Simple_repeat Simple_repeat 1 41 0 228 163 0 0 chr11 44835763 44835806 -105947747 + (CA)n Simple_repeat Simple_repeat 2 44 0 235 250 83 9 chr11 44835810 44835918 -105947635 - L1ME4a LINE L1 -4 6117 6002 592 270 17 23 chr11 44835936 44836110 -105947443 - L2 LINE L2 0 3313 3141 1172 271 126 7 chr11 44836126 44836539 -105947014 + LTR33 LTR ERVL 48 509 -12 2318 113 0 0 chr11 44836586 44836915 -105946638 + THE1B LTR MaLR 34 362 -2 225 220 17 34 chr11 44836988 44837047 -105946506 - L2 LINE L2 -219 3053 2996 270 81 0 0 chr11 44837089 44837126 -105946427 + (GA)n Simple_repeat Simple_repeat 2 38 0 316 250 80 57 chr11 44837185 44837361 -105946192 - L1ME4a LINE L1 -230 5891 5712 191 299 182 0 chr11 44838698 44838775 -105944778 - MIR SINE MIR -108 154 64 538 338 62 44 chr11 44839283 44839558 -105943995 + L2 LINE L2 2993 3272 0 2270 123 0 3 chr11 44839576 44839878 -105943675 + AluSp SINE Alu 1 301 -12 1248 232 25 22 chr11 44840134 44840500 -105943053 - LTR52 LTR ERVL -25 396 30 810 275 54 80 chr11 44840509 44840898 -105942655 + MLT1E LTR MaLR 52 430 -163 238 318 152 0 chr11 44841149 44841281 -105942272 - MIR SINE MIR -55 207 56 1742 172 0 0 chr11 44841732 44841994 -105941559 + AluSx SINE Alu 1 262 -50 366 353 52 17 chr11 44842186 44842359 -105941194 - HAL1b LINE L1 -911 437 259 38979 69 3 1 chr11 44842369 44848499 -105935054 - L1PA5 LINE L1 -8 6146 5 281 312 7 71 chr11 44849066 44849207 -105934346 - MIR SINE MIR -75 187 56 245 265 59 0 chr11 44849236 44849304 -105934249 - L2 LINE L2 0 3272 3201 1517 233 37 27 chr11 44850627 44851142 -105932411 - Charlie1b DNA MER1_type -3 520 1 238 333 85 54 chr11 44851266 44851656 -105931897 + L2 LINE L2 2912 3313 0 406 311 37 22 chr11 44851682 44851817 -105931736 + MIR SINE MIR 20 156 -106 548 337 98 34 chr11 44851820 44852298 -105931255 - L2 LINE L2 -1 3312 2804 238 346 0 19 chr11 44852308 44852412 -105931141 + MIR SINE MIR 159 260 -2 234 0 0 0 chr11 44852650 44852676 -105930877 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 40244 39 23 1 chr11 44852677 44858671 -105924882 - L1PA2 LINE L1 -23 6132 1 860 292 35 16 chr11 44859272 44859584 -105923969 - MLT1I LTR MaLR -29 380 63 312 336 65 70 chr11 44859694 44859815 -105923738 + MIR SINE MIR 28 149 -113 3963 152 27 4 chr11 44859815 44860508 -105923045 + L1PA16 LINE L1 5452 6160 -6 312 336 65 70 chr11 44860508 44860615 -105922938 + MIR SINE MIR 149 255 -7 203 358 133 28 chr11 44860618 44860970 -105922583 + L2 LINE L2 1789 2177 -1137 384 298 147 22 chr11 44860977 44861202 -105922351 + MIR SINE MIR 5 257 -5 445 363 8 0 chr11 44861458 44861714 -105921839 + MIR SINE MIR 1 258 -4 21 0 0 0 chr11 44863437 44863458 -105920095 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 44863958 44863986 -105919567 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 44864572 44864594 -105918959 + AT_rich Low_complexity Low_complexity 1 22 0 236 301 168 0 chr11 44864885 44864998 -105918555 - L2 LINE L2 -1 3312 3181 1627 193 3 10 chr11 44865027 44865338 -105918215 + AluJo SINE Alu 1 309 -3 21 0 0 0 chr11 44865392 44865413 -105918140 + AT_rich Low_complexity Low_complexity 1 21 0 186 348 0 0 chr11 44865470 44865516 -105918037 + L2 LINE L2 3141 3186 -86 463 274 49 24 chr11 44865751 44866039 -105917514 + AluJo SINE Alu 14 308 -4 180 353 22 59 chr11 44866170 44866306 -105917247 + L2 LINE L2 3141 3271 -1 2784 16 0 0 chr11 44866635 44866944 -105916609 - AluYb8 SINE Alu -9 309 1 372 360 80 25 chr11 44867617 44867817 -105915736 + MIR SINE MIR 32 242 -20 1001 201 28 19 chr11 44867858 44868072 -105915481 + MER20 DNA MER1_type 1 216 -3 2346 98 0 0 chr11 44869242 44869538 -105914015 - AluSc SINE Alu -11 298 3 2257 89 7 3 chr11 44869783 44870074 -105913479 + AluY SINE Alu 2 293 -18 183 273 20 81 chr11 44870504 44870603 -105912950 - MIR SINE MIR -71 191 99 709 292 0 16 chr11 44870691 44870876 -105912677 + MIR SINE MIR 17 198 -64 375 270 0 11 chr11 44870938 44871027 -105912526 - MER2 DNA MER2_type -256 89 2 2260 107 0 0 chr11 44871097 44871386 -105912167 - AluY SINE Alu -22 289 1 196 143 71 0 chr11 44871459 44871501 -105912052 - MIR SINE MIR -98 164 120 1303 260 78 74 chr11 44871506 44871932 -105911621 - MLT1G LTR MaLR -4 586 161 3268 132 12 6 chr11 44871932 44872426 -105911127 - LOR1a LTR ERV1 0 497 1 1303 260 78 74 chr11 44872426 44872579 -105910974 - MLT1G LTR MaLR -429 161 10 1214 285 80 43 chr11 44873048 44873722 -105909831 + L2 LINE L2 2620 3313 0 1637 245 52 21 chr11 44874065 44874530 -105909023 + MLT1D LTR MaLR 1 479 -26 676 284 73 82 chr11 44876025 44876460 -105907093 - MLT1H1 LTR MaLR 0 555 124 2094 87 0 0 chr11 44876460 44876750 -105906803 - AluY SINE Alu 0 307 18 676 284 73 82 chr11 44876750 44876873 -105906680 - MLT1H1 LTR MaLR -431 124 1 27 0 0 0 chr11 44876896 44876923 -105906630 + AT_rich Low_complexity Low_complexity 1 27 0 2426 92 0 0 chr11 44877593 44877898 -105905655 + AluY SINE Alu 1 305 -6 267 225 12 12 chr11 44877924 44878004 -105905549 + L1M4 LINE L1 2460 2539 -3607 865 210 115 92 chr11 44878260 44878304 -105905249 + MSTD LTR MaLR 1 43 -353 2098 110 7 20 chr11 44878304 44878604 -105904949 - AluSx SINE Alu -14 298 3 865 210 115 92 chr11 44878604 44878916 -105904637 + MSTD LTR MaLR 43 396 0 6238 31 2 0 chr11 44880784 44881590 -105901963 - L1PA3 LINE L1 -2738 3408 2601 16099 40 0 1 chr11 44881590 44884336 -105899217 + L1PA3 LINE L1 3407 6155 0 24 32 0 0 chr11 44884527 44884558 -105898995 + AT_rich Low_complexity Low_complexity 1 31 0 2015 218 51 28 chr11 44884562 44885090 -105898463 - MER89 LTR ERV1 -11 548 9 22 0 0 0 chr11 44885245 44885267 -105898286 + AT_rich Low_complexity Low_complexity 1 22 0 970 217 44 0 chr11 44885807 44886010 -105897543 - MER20 DNA MER1_type -1 218 7 208 329 124 29 chr11 44886039 44886176 -105897377 + MER5A DNA MER1_type 39 188 -1 277 312 28 9 chr11 44886186 44886295 -105897258 + L3 LINE CR1 1208 1318 -259 286 361 46 15 chr11 44886345 44886475 -105897078 + L3 LINE CR1 1430 1563 -14 247 269 65 65 chr11 44886606 44886714 -105896839 - MER5B DNA MER1_type -4 174 67 291 326 72 23 chr11 44886715 44886873 -105896680 - MIR SINE MIR -68 140 19 404 332 82 20 chr11 44887510 44887754 -105895799 - MIR SINE MIR 0 262 4 308 333 87 13 chr11 44889148 44889298 -105894255 - MIR SINE MIR -70 192 32 373 346 70 16 chr11 44889426 44889611 -105893942 + MIR SINE MIR 13 207 -55 512 323 57 31 chr11 44889754 44889983 -105893570 + MIR SINE MIR 7 241 -21 773 322 88 41 chr11 44890355 44890774 -105892779 - L2 LINE L2 -32 3281 2843 328 367 23 8 chr11 44890800 44890928 -105892625 + L2 LINE L2 3121 3250 -22 414 312 67 67 chr11 44891205 44891459 -105892094 + MLT1H LTR MaLR 12 268 -281 2186 125 3 3 chr11 44891459 44891770 -105891783 + AluSx SINE Alu 1 311 -1 414 312 67 67 chr11 44891770 44891903 -105891650 + MLT1H LTR MaLR 267 399 -150 240 369 19 0 chr11 44892893 44892996 -105890557 - MER81 DNA DNA -5 109 5 427 312 158 4 chr11 44893237 44893484 -105890069 - L2 LINE L2 0 3313 3029 332 154 0 77 chr11 44893484 44893562 -105889991 + MER77 LTR ERV1 368 439 -166 343 173 53 0 chr11 44893725 44893800 -105889753 + MER77 LTR ERV1 527 605 0 265 231 11 22 chr11 44893800 44893891 -105889662 + L1MEc LINE L1 1693 1782 -4614 * 500 283 108 9 chr11 44893887 44894099 -105889454 + L1ME3A LINE L1 5880 6112 -58 342 311 21 2 chr11 44894301 44894443 -105889110 + MIR SINE MIR 51 193 -63 21 0 0 0 chr11 44894773 44894794 -105888759 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr11 44895194 44895225 -105888328 + AT_rich Low_complexity Low_complexity 1 31 0 442 278 43 31 chr11 44895342 44895504 -105888049 - MIR3 SINE MIR -9 199 36 599 313 12 29 chr11 44895547 44895793 -105887760 + MIR SINE MIR 19 260 -2 192 40 0 0 chr11 44896149 44896174 -105887379 + (TG)n Simple_repeat Simple_repeat 2 26 0 258 319 85 0 chr11 44896282 44896376 -105887177 + MIR SINE MIR 45 146 -62 392 82 16 0 chr11 44896550 44896611 -105886942 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 704 191 8 0 chr11 44896611 44896737 -105886816 - FRAM SINE Alu -29 147 21 26 0 0 0 chr11 44896946 44896972 -105886581 + AT_rich Low_complexity Low_complexity 1 26 0 208 367 125 0 chr11 44897209 44897329 -105886224 - L2 LINE L2 -15 3257 3123 215 100 0 25 chr11 44897650 44897690 -105885863 + (TA)n Simple_repeat Simple_repeat 2 40 0 36 53 0 0 chr11 44897741 44897798 -105885755 + AT_rich Low_complexity Low_complexity 1 57 0 223 200 40 13 chr11 44897802 44897877 -105885676 + (TA)n Simple_repeat Simple_repeat 1 77 0 661 308 84 47 chr11 44898197 44898336 -105885217 + L2 LINE L2 2895 3027 -286 2281 84 3 32 chr11 44898336 44898644 -105884909 + AluY SINE Alu 1 299 -12 661 308 84 47 chr11 44898644 44898907 -105884646 + L2 LINE L2 3027 3312 -1 207 0 0 0 chr11 44898915 44898938 -105884615 + (T)n Simple_repeat Simple_repeat 1 23 0 2330 104 0 0 chr11 44900073 44900370 -105883183 - AluSx SINE Alu -9 303 7 333 315 49 14 chr11 44900863 44901006 -105882547 + MIR SINE MIR 49 196 -66 671 300 37 50 chr11 44901259 44901696 -105881857 + MLT1K LTR MaLR 145 575 -13 253 333 12 0 chr11 44901696 44901780 -105881773 + MIR SINE MIR 85 169 -93 2030 107 7 0 chr11 44902089 44902359 -105881194 + AluSq SINE Alu 1 272 -41 2362 143 3 6 chr11 44903102 44903467 -105880086 + THE1B LTR MaLR 1 364 0 9643 120 18 60 chr11 44903467 44905114 -105878439 + THE1B-int LTR MaLR 1 1578 -2 2608 115 3 3 chr11 44905116 44905480 -105878073 + THE1B LTR MaLR 1 364 0 2247 109 0 3 chr11 44905890 44906193 -105877360 - AluY SINE Alu -9 302 1 416 174 157 8 chr11 44906244 44906365 -105877188 + L1MC2 LINE L1 6206 6344 0 2085 79 14 0 chr11 44907561 44907852 -105875701 - L1PA7 LINE L1 -1692 4454 4160 6763 57 12 2 chr11 44907852 44909537 -105874016 + L1PA7 LINE L1 4462 6154 0 2116 128 0 0 chr11 44909723 44910019 -105873534 - AluSx SINE Alu -16 296 1 2738 82 0 0 chr11 44911581 44911936 -105871617 + THE1A LTR MaLR 1 355 0 1864 145 30 30 chr11 44912130 44912468 -105871085 - MER44D DNA MER2_type -1 608 1 312 311 19 10 chr11 44914378 44914481 -105869072 - LTR16B LTR ERVL -344 120 17 2243 91 7 13 chr11 44915430 44915738 -105867815 + AluSx SINE Alu 1 306 -6 2195 99 20 0 chr11 44916583 44916875 -105866678 - AluSp SINE Alu -13 300 3 24 53 0 0 chr11 44917118 44917156 -105866397 + AT_rich Low_complexity Low_complexity 1 38 0 195 293 17 0 chr11 44917216 44917274 -105866279 - MIR SINE MIR -65 197 139 186 222 22 0 chr11 44918692 44918737 -105864816 - MIR SINE MIR -56 206 161 2241 110 7 0 chr11 44918950 44919258 -105864295 - AluSp SINE Alu -3 310 1 52 69 0 0 chr11 44919359 44919460 -105864093 + AT_rich Low_complexity Low_complexity 1 101 0 236 186 26 53 chr11 44919526 44919639 -105863914 + (TTATA)n Simple_repeat Simple_repeat 4 113 0 67 89 0 0 chr11 44919669 44919848 -105863705 + AT_rich Low_complexity Low_complexity 1 179 0 38 75 0 0 chr11 44920128 44920208 -105863345 + AT_rich Low_complexity Low_complexity 1 80 0 2300 112 0 6 chr11 44920649 44920961 -105862592 + AluSq SINE Alu 1 310 -3 6884 55 0 3 chr11 44920988 44921859 -105861694 + L1PA5 LINE L1 5282 6149 -5 341 362 40 7 chr11 44922482 44922631 -105860922 + MIR SINE MIR 23 176 -86 205 391 55 0 chr11 44922691 44922801 -105860752 + MIR SINE MIR 35 150 -112 273 290 0 0 chr11 44923717 44923779 -105859774 - L2 LINE L2 -2 3311 3250 746 331 76 39 chr11 44924011 44924802 -105858751 + L2 LINE L2 2485 3312 -1 1372 257 25 20 chr11 44924866 44925259 -105858294 - LTR52 LTR ERVL -26 395 1 2082 130 3 0 chr11 44925308 44925608 -105857945 - AluSc SINE Alu -8 301 1 281 336 103 14 chr11 44925608 44925754 -105857799 - L2 LINE L2 -567 2747 2589 2135 142 18 34 chr11 44927306 44927686 -105855867 - THE1C LTR MaLR -1 374 1 893 113 14 0 chr11 44927686 44927827 -105855726 - THE1C-int LTR MaLR 0 1580 1438 9214 129 52 20 chr11 44927827 44929322 -105854231 - THE1C-int LTR MaLR -38 1542 1 2021 164 16 24 chr11 44929322 44929700 -105853853 - THE1C LTR MaLR 0 375 1 465 322 91 13 chr11 44929806 44930337 -105853216 + L1ME4a LINE L1 5347 5915 -206 632 306 97 85 chr11 44931987 44932470 -105851083 - L2 LINE L2 -4 3309 2821 707 231 64 11 chr11 44932531 44932795 -105850758 - L1M4 LINE L1 -1485 4661 4384 1539 114 5 0 chr11 44932805 44933015 -105850538 - AluSq SINE Alu -102 211 1 267 191 0 0 chr11 44933015 44933078 -105850475 - L1M4 LINE L1 -3259 2887 2825 2182 170 28 28 chr11 44933081 44933510 -105850043 + Tigger2a DNA MER2_type 6 434 0 477 234 130 0 chr11 44933513 44933695 -105849858 - L1M4 LINE L1 -3324 2822 2614 14633 224 19 12 chr11 44933706 44936909 -105846644 - L1PA15 LINE L1 -8 6860 3605 2237 114 3 0 chr11 44936909 44937216 -105846337 + AluSc SINE Alu 1 308 -1 14633 224 19 12 chr11 44937216 44939038 -105844515 - L1PA15 LINE L1 -3263 3605 1798 1251 107 6 0 chr11 44939059 44939227 -105844326 + AluY SINE Alu 1 169 -142 35375 68 3 7 chr11 44939287 44944029 -105839524 + L1P LINE L1 2 4723 -1423 700 35 0 0 chr11 44944287 44944372 -105839181 + L1MA1 LINE L1 5881 5965 -337 516 239 9 104 chr11 44945124 44945346 -105838207 + LTR16A1 LTR ERVL 187 387 -70 187 312 198 32 chr11 44945434 44945591 -105837962 - MIR SINE MIR -65 197 15 1684 59 0 0 chr11 44945741 44945943 -105837610 - AluY SINE Alu -10 301 100 302 353 68 0 chr11 44946112 44946245 -105837308 + MIR SINE MIR 49 190 -72 22 0 0 0 chr11 44946643 44946665 -105836888 + AT_rich Low_complexity Low_complexity 1 22 0 240 86 0 0 chr11 44946689 44946724 -105836829 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr11 44947007 44947029 -105836524 + AT_rich Low_complexity Low_complexity 1 22 0 363 253 0 0 chr11 44947302 44947385 -105836168 - MER58A DNA MER1_type 0 112 30 194 301 96 0 chr11 44948400 44948473 -105835080 + MIR SINE MIR 28 107 -155 687 266 160 80 chr11 44948473 44948872 -105834681 + MLT1J2 LTR MaLR 1 431 -15 258 306 28 28 chr11 44948956 44949064 -105834489 - MIR SINE MIR -60 202 95 267 258 136 61 chr11 44949091 44949223 -105834330 + MIR SINE MIR 121 262 0 22 70 0 0 chr11 44949777 44949820 -105833733 + AT_rich Low_complexity Low_complexity 1 43 0 211 326 23 62 chr11 44950452 44950581 -105832972 + L2 LINE L2 2934 3057 -215 182 375 0 0 chr11 44950734 44950806 -105832747 + L2 LINE L2 2905 2976 -296 438 287 27 22 chr11 44951017 44951240 -105832313 - L1M4 LINE L1 -2123 4023 3800 227 213 0 16 chr11 44951526 44951587 -105831966 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 437 129 0 24 chr11 44951591 44951676 -105831877 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 716 123 0 0 chr11 44951912 44952026 -105831527 + AluY SINE Alu 195 308 -3 196 389 120 0 chr11 44952600 44952708 -105830845 - L2 LINE L2 0 3313 3193 * 306 248 75 105 chr11 44952706 44952839 -105830714 - L2 LINE L2 -1 3271 3143 192 429 83 0 chr11 44952898 44953031 -105830522 - L2 LINE L2 -18 3254 3111 309 333 62 16 chr11 44953560 44953689 -105829864 + L2 LINE L2 3176 3310 -3 378 279 30 55 chr11 44953831 44954032 -105829521 + MIR SINE MIR 55 250 -12 302 322 59 13 chr11 44955695 44955847 -105827706 - MIR SINE MIR -43 219 61 286 335 40 20 chr11 44956194 44956346 -105827207 + MIR SINE MIR 15 169 -93 975 127 0 4 chr11 45056365 45057084 -105726469 + HSATII Satellite Satellite 1 716 0 1107 106 0 23 chr11 45057117 45057505 -105726048 + HSATII Satellite Satellite 1 379 0 928 137 9 18 chr11 45057531 45057863 -105725690 + HSATII Satellite Satellite 1 329 -14 1047 90 1 47 chr11 45057899 45058668 -105724885 + HSATII Satellite Satellite 1 733 -1 596 163 0 7 chr11 45058643 45058778 -105724775 + (CATTC)n Satellite Satellite 2 135 0 * 525 105 0 0 chr11 45058840 45058926 -105724627 + (CATTC)n Satellite Satellite 5 90 0 1019 112 16 12 chr11 45059263 45060777 -105722776 - HSATII Satellite Satellite 0 1520 1 887 125 6 0 chr11 45060794 45060962 -105722591 - HSATII Satellite Satellite -1 169 1 1058 123 2 14 chr11 45060974 45062808 -105720745 - HSATII Satellite Satellite -72 1811 1 984 129 0 0 chr11 45062824 45062994 -105720559 - HSATII Satellite Satellite 0 170 1 870 137 0 0 chr11 45063020 45063224 -105720329 - HSATII Satellite Satellite 0 204 1 1074 124 3 14 chr11 45063246 45065102 -105718451 - HSATII Satellite Satellite -121 1835 1 953 99 0 14 chr11 45065132 45065349 -105718204 - HSATII Satellite Satellite -2 213 1 1191 164 6 2 chr11 45065463 45072054 -105711499 - ALR/Alpha Satellite centromeric -1 6615 1 1123 161 3 2 chr11 45072066 45074765 -105708788 - ALR/Alpha Satellite centromeric 0 2700 1 16142 39 1 2 chr11 45174769 45176855 -105606698 - L1P LINE L1 -1818 4328 2246 312 292 33 23 chr11 45178093 45178238 -105605315 + MIR SINE MIR 45 191 -71 309 253 32 10 chr11 45178763 45178880 -105604673 + MLT1I LTR MaLR 29 145 -264 252 248 2 103 chr11 45179014 45179131 -105604422 + MLT1G1 LTR MaLR 453 549 0 605 256 43 53 chr11 45179383 45179590 -105603963 + MER89 LTR ERV1 122 326 -233 226 0 29 29 chr11 45179790 45179825 -105603728 + (TAA)n Simple_repeat Simple_repeat 2 36 0 7541 135 9 6 chr11 45179825 45181083 -105602470 - HSMAR2 DNA Mariner -39 1263 1 191 306 32 0 chr11 45181085 45181147 -105602406 - L2 LINE L2 -1523 1791 1728 566 285 64 69 chr11 45181161 45181768 -105601785 - L1M4 LINE L1 -2000 4146 3543 21 57 0 0 chr11 45181913 45181948 -105601605 + AT_rich Low_complexity Low_complexity 1 35 0 599 164 6 124 chr11 45181991 45182168 -105601385 - MER50 LTR ERV1 -130 604 449 * 1259 112 27 31 chr11 45182157 45182380 -105601173 - MER50 LTR ERV1 -512 222 1 2182 132 16 8 chr11 45182380 45182750 -105600803 - MER50-int LTR ERV1 -8 7197 6825 715 99 10 0 chr11 45182749 45182871 -105600682 - MER50-int LTR ERV1 -1018 6187 3912 * 345 275 95 82 chr11 45182878 45183194 -105600359 - L1M4 LINE L1 -2947 3199 2880 629 231 21 0 chr11 45183604 45183747 -105599806 - MIR SINE MIR 0 262 117 1021 239 64 21 chr11 45183788 45184118 -105599435 + MER2 DNA MER2_type 1 344 0 244 256 39 39 chr11 45184202 45184280 -105599273 - MIR SINE MIR -32 230 153 608 171 154 0 chr11 45184280 45184397 -105599156 - FLAM_C SINE Alu -8 135 1 2039 72 0 0 chr11 45184408 45184657 -105598896 - AluY SINE Alu -19 292 44 380 288 14 41 chr11 45184673 45184819 -105598734 - MIR SINE MIR -119 143 2 27417 45 2 2 chr11 45185688 45190036 -105593517 - L1PA4 LINE L1 -26 6129 1782 2031 94 55 7 chr11 45190221 45190528 -105593025 + AluSx SINE Alu 1 312 0 207 265 0 0 chr11 45190761 45190810 -105592743 + (ATG)n Simple_repeat Simple_repeat 2 50 0 608 252 175 15 chr11 45190825 45191031 -105592522 - MIR SINE MIR 0 262 24 666 152 0 9 chr11 45191031 45191162 -105592391 - AluJb SINE Alu 0 312 181 680 19 58 10 chr11 45191162 45191266 -105592287 + (TTTC)n Simple_repeat Simple_repeat 1 109 0 657 168 11 34 chr11 45191274 45191453 -105592100 + CT-rich Low_complexity Low_complexity 4 178 0 346 25 0 0 chr11 45191453 45191493 -105592060 + (TC)n Simple_repeat Simple_repeat 2 41 0 2080 116 0 0 chr11 45191494 45191762 -105591791 - AluSc SINE Alu -38 271 4 251 273 0 0 chr11 45191765 45191820 -105591733 - AluJ/monomer SINE Alu -245 55 1 245 267 53 0 chr11 45192274 45192349 -105591204 - L1MC4a LINE L1 -1883 5925 5847 201 39 0 0 chr11 45192363 45192389 -105591164 + (TTA)n Simple_repeat Simple_repeat 1 26 0 2167 97 0 31 chr11 45192389 45192539 -105591014 - AluSq SINE Alu -32 281 142 2180 87 0 7 chr11 45192539 45192849 -105590704 - AluY SINE Alu 0 308 1 2167 97 0 31 chr11 45192849 45192987 -105590566 - AluSq SINE Alu -171 142 1 293 83 67 17 chr11 45193083 45193143 -105590410 + L1ME4a LINE L1 6028 6090 -31 250 265 10 71 chr11 45193190 45193288 -105590265 - MIR3 SINE MIR -32 176 85 1346 186 40 78 chr11 45193452 45193559 -105589994 + MLT1A1 LTR MaLR 1 111 -254 2117 103 38 0 chr11 45193559 45193851 -105589702 - AluSp SINE Alu -10 303 1 1346 186 40 78 chr11 45193851 45194114 -105589439 + MLT1A1 LTR MaLR 111 357 -8 290 248 212 44 chr11 45194200 45194337 -105589216 - L2 LINE L2 -1 3312 3153 1669 158 50 0 chr11 45194524 45194802 -105588751 - AluJo SINE Alu -19 293 2 1420 152 4 33 chr11 45195274 45195517 -105588036 - AluSg/x SINE Alu -9 303 68 2164 124 0 3 chr11 45195569 45195868 -105587685 - AluSx SINE Alu -14 298 1 246 345 36 0 chr11 45196246 45196330 -105587223 - MIR SINE MIR -168 94 8 506 161 21 0 chr11 45196449 45196542 -105587011 + MIR SINE MIR 151 245 -17 660 245 53 42 chr11 45196679 45196944 -105586609 - MLT1C LTR MaLR 0 467 200 192 143 0 0 chr11 45197177 45197219 -105586334 + (GA)n Simple_repeat Simple_repeat 1 42 0 584 250 89 12 chr11 45197273 45197441 -105586112 + MIR SINE MIR 75 255 -7 2305 54 41 7 chr11 45197491 45197786 -105585767 - AluY SINE Alu -6 305 1 1320 177 137 30 chr11 45197841 45198112 -105585441 + AluJb SINE Alu 1 300 -2 27 0 0 26 chr11 45198140 45198158 -105585395 + AT_rich Low_complexity Low_complexity 1 18 -19 2009 147 0 0 chr11 45198158 45198443 -105585110 - AluSx SINE Alu -27 285 1 27 0 0 26 chr11 45198443 45198462 -105585091 + AT_rich Low_complexity Low_complexity 18 37 0 2514 119 2 8 chr11 45198462 45198857 -105584696 - L1MA2 LINE L1 0 6304 5912 340 326 86 39 chr11 45199500 45199733 -105583820 - MIR SINE MIR 0 262 19 2191 121 0 3 chr11 45199735 45200041 -105583512 - AluSx SINE Alu -7 305 1 1825 168 0 13 chr11 45200041 45200350 -105583203 - AluJo SINE Alu -7 305 1 2200 108 3 0 chr11 45200627 45200924 -105582629 + AluSx SINE Alu 1 298 -14 310 244 38 30 chr11 45200962 45201093 -105582460 - L1ME4a LINE L1 -11 6110 5979 316 148 0 0 chr11 45201118 45201172 -105582381 - Alu SINE Alu -1 301 248 25 83 0 0 chr11 45201181 45201241 -105582312 + AT_rich Low_complexity Low_complexity 1 60 0 13544 177 23 15 chr11 45201372 45203423 -105580130 - L1MA4A LINE L1 -29 6976 4943 2259 109 0 0 chr11 45203423 45203716 -105579837 - AluY SINE Alu -18 293 1 13544 177 23 15 chr11 45203716 45205724 -105577829 - L1MA4A LINE L1 -2062 4943 2883 787 222 27 0 chr11 45205722 45205907 -105577646 - L1MA4A LINE L1 -6650 199 10 * 716 262 44 11 chr11 45205919 45206190 -105577363 - L1ME4a LINE L1 -294 5827 5548 21 0 0 0 chr11 45206222 45206243 -105577310 + AT_rich Low_complexity Low_complexity 1 21 0 2080 182 203 27 chr11 45206708 45207377 -105576176 + LTR48 LTR ERV1 1 787 0 227 171 57 138 chr11 45207389 45207442 -105576111 + MLT1L LTR MaLR 497 553 -62 2278 113 0 0 chr11 45207442 45207744 -105575809 - AluSq SINE Alu -11 302 1 227 171 57 138 chr11 45207744 45207813 -105575740 + MLT1L LTR MaLR 553 609 -6 21 36 0 0 chr11 45207968 45207996 -105575557 + AT_rich Low_complexity Low_complexity 1 28 0 627 256 12 12 chr11 45208150 45208322 -105575231 + MIR SINE MIR 91 262 0 1218 180 138 132 chr11 45208339 45208968 -105574585 - LTR27 LTR ERV1 -1 635 3 205 190 52 17 chr11 45209154 45209212 -105574341 + (CAAA)n Simple_repeat Simple_repeat 4 63 0 772 261 87 42 chr11 45209487 45209866 -105573687 - MLT1I LTR MaLR -7 402 7 204 234 0 0 chr11 45210337 45210384 -105573169 + L2 LINE L2 3266 3312 -1 318 211 173 0 chr11 45210722 45210826 -105572727 + MLT1H LTR MaLR 373 494 -55 769 205 124 81 chr11 45210832 45210900 -105572653 - MER58A DNA MER1_type -2198 222 158 3167 193 60 42 chr11 45210900 45211710 -105571843 - LTR1B LTR ERV1 0 826 2 769 205 124 81 chr11 45211710 45211851 -105571702 - MER58A DNA MER1_type -2262 158 4 267 182 18 0 chr11 45211851 45211906 -105571647 + MLT1H LTR MaLR 533 588 -2 610 310 25 8 chr11 45212490 45212735 -105570818 + MIR SINE MIR 12 260 -2 921 284 78 12 chr11 45213078 45213413 -105570140 - LTR16A LTR ERVL -14 436 80 1616 166 12 127 chr11 45213673 45214028 -105569525 - MER93b LTR ERV1 -5 368 66 1714 46 0 0 chr11 45214028 45214225 -105569328 + AluY SINE Alu 99 295 -16 1616 166 12 127 chr11 45214225 45214285 -105569268 - MER93b LTR ERV1 -307 66 1 348 280 20 10 chr11 45214391 45214491 -105569062 - MIR SINE MIR -63 145 45 539 249 127 47 chr11 45215007 45215220 -105568333 - MIR SINE MIR -2 260 31 209 335 37 67 chr11 45215527 45215691 -105567862 + MIR SINE MIR 23 181 -81 903 199 25 15 chr11 45215917 45216118 -105567435 + MER3 DNA MER1_type 3 205 -4 326 259 12 0 chr11 45216137 45216218 -105567335 + L2 LINE L2 3232 3313 0 21 0 0 0 chr11 45216873 45216894 -105566659 + AT_rich Low_complexity Low_complexity 1 21 0 2099 133 0 13 chr11 45216944 45217244 -105566309 - AluSx SINE Alu -16 296 1 565 246 85 89 chr11 45217295 45217519 -105566034 - MIR SINE MIR -9 253 31 679 290 23 28 chr11 45217530 45217744 -105565809 - MIR SINE MIR -34 228 16 1763 220 70 11 chr11 45217755 45218196 -105565357 + MLT1C LTR MaLR 1 467 0 2105 136 0 22 chr11 45218234 45218551 -105565002 - AluSq SINE Alu -3 310 1 499 279 69 10 chr11 45218797 45219001 -105564552 + MIR SINE MIR 47 262 0 381 270 11 0 chr11 45219601 45219690 -105563863 + MER5A DNA MER1_type 16 105 -84 2062 152 0 0 chr11 45219928 45220225 -105563328 - AluSx SINE Alu -15 297 1 507 314 33 41 chr11 45220399 45220644 -105562909 - MIR SINE MIR -8 254 12 1264 236 17 14 chr11 45220812 45221108 -105562445 - MLT1C LTR MaLR 0 467 171 282 64 0 106 chr11 45221146 45221193 -105562360 + MLT1C LTR MaLR 101 142 -325 2110 90 75 12 chr11 45221247 45221568 -105561985 + L1PB2 LINE L1 5808 6148 -3 442 242 0 0 chr11 45222025 45222116 -105561437 - Tigger5 DNA MER2_type -3 2320 2230 361 284 0 0 chr11 45222120 45222208 -105561345 + Tigger5 DNA MER2_type 1 88 -2235 288 206 15 15 chr11 45222230 45222298 -105561255 - Tigger5 DNA MER2_type -5 2318 2251 285 236 0 0 chr11 45222267 45222322 -105561231 - Tigger5 DNA MER2_type -2268 55 1 * 8844 57 3 4 chr11 45222754 45223826 -105559727 + MER11C LTR ERVK 1 1071 0 814 148 44 50 chr11 45224155 45224337 -105559216 - MLT1C LTR MaLR -286 181 1 540 127 0 13 chr11 45224342 45224421 -105559132 - AluJ/FLAM SINE Alu -228 84 7 465 277 179 16 chr11 45224449 45224633 -105558920 + MIR SINE MIR 8 221 -41 230 262 189 16 chr11 45224634 45224756 -105558797 + LTR16A1 LTR ERVL 1 143 -314 548 214 172 0 chr11 45224796 45224941 -105558612 + LTR16A1 LTR ERVL 288 457 0 829 113 0 15 chr11 45224972 45225135 -105558418 + FLAM_C SINE Alu 1 161 0 2753 93 5 8 chr11 45225184 45225560 -105557993 - THE1C LTR MaLR 0 375 1 320 0 0 24 chr11 45225998 45226039 -105557514 + (CAT)n Simple_repeat Simple_repeat 3 42 0 222 261 152 11 chr11 45226151 45226243 -105557310 - MIR SINE MIR -119 143 39 411 73 0 0 chr11 45227514 45227569 -105555984 + (TA)n Simple_repeat Simple_repeat 2 56 0 1520 162 88 0 chr11 45227569 45227713 -105555840 - AluJo SINE Alu -9 303 173 525 58 0 0 chr11 45227713 45227782 -105555771 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 1520 162 88 0 chr11 45227782 45227912 -105555641 - AluJo SINE Alu -139 173 1 2274 107 0 22 chr11 45230339 45230657 -105552896 - AluSq SINE Alu -2 311 1 283 222 153 0 chr11 45230707 45230779 -105552774 - MLT1K LTR MaLR -1 587 505 606 295 19 14 chr11 45231086 45231293 -105552260 - MIR SINE MIR -54 208 1 1634 189 7 14 chr11 45231512 45231809 -105551744 - AluJb SINE Alu -15 297 3 450 193 67 25 chr11 45231842 45231961 -105551592 - MIR SINE MIR -93 169 46 1092 86 23 6 chr11 45232672 45232846 -105550707 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 294 179 0 0 chr11 45232850 45232906 -105550647 + CT-rich Low_complexity Low_complexity 3 58 0 2016 142 3 7 chr11 45232928 45233223 -105550330 - AluSx SINE Alu -18 294 1 204 40 0 0 chr11 45236527 45236552 -105547001 + (TG)n Simple_repeat Simple_repeat 2 26 0 2548 60 0 0 chr11 45236610 45236911 -105546642 + AluY SINE Alu 1 301 -10 229 270 48 0 chr11 45236987 45237050 -105546503 - L1ME LINE L1 -369 5801 5736 434 333 6 19 chr11 45237145 45237304 -105546249 - MIR3 SINE MIR -16 192 36 326 342 20 64 chr11 45237414 45237616 -105545937 + MER91A DNA MER1_type 3 195 -1 1749 152 0 37 chr11 45238186 45238482 -105545071 - AluJo SINE Alu -16 296 12 2179 165 11 11 chr11 45238710 45239085 -105544468 - L1MC1 LINE L1 -23 6310 5936 1290 86 5 41 chr11 45239062 45239259 -105544294 - L1PA8A LINE L1 0 6131 5942 * 392 161 43 0 chr11 45239278 45239371 -105544182 - L1MB3 LINE L1 0 6183 6087 4631 139 10 19 chr11 45239374 45239915 -105543638 - L1MA4 LINE L1 -278 6022 5492 1976 145 0 17 chr11 45239915 45240211 -105543342 - AluSx SINE Alu -21 291 1 4631 139 10 19 chr11 45240211 45240586 -105542967 - L1MA4 LINE L1 -808 5492 5115 1867 152 61 0 chr11 45240582 45240911 -105542642 - L1MC1 LINE L1 -353 5980 5632 * 8966 47 11 2 chr11 45241656 45243517 -105540036 - L1PA6 LINE L1 -2 6152 4261 374 234 0 6 chr11 45244062 45244233 -105539320 + GA-rich Low_complexity Low_complexity 1 170 0 204 40 0 0 chr11 45244673 45244698 -105538855 + (A)n Simple_repeat Simple_repeat 1 25 0 2130 98 7 17 chr11 45245892 45246187 -105537366 - AluY SINE Alu -5 306 15 487 331 54 59 chr11 45246187 45246719 -105536834 - L2 LINE L2 -8 3264 2715 594 286 120 62 chr11 45247245 45247710 -105535843 - MLT1J LTR MaLR 0 463 1 799 257 11 6 chr11 45247715 45247894 -105535659 + MLT1H LTR MaLR 1 180 -369 257 272 93 25 chr11 45249090 45249252 -105534301 - L1ME4a LINE L1 -72 6049 5877 2189 115 20 0 chr11 45249292 45249596 -105533957 - AluSx SINE Alu -2 310 1 233 243 71 0 chr11 45250181 45250251 -105533302 + MIR SINE MIR 92 166 -96 739 197 0 0 chr11 45250781 45250908 -105532645 - FLAM_A SINE Alu -2 131 5 1142 203 29 0 chr11 45251157 45251364 -105532189 - MER20 DNA MER1_type -6 213 1 967 218 121 97 chr11 45252102 45252432 -105531121 - MLT1H LTR MaLR -12 537 200 453 285 35 38 chr11 45252962 45253204 -105530349 + MLT1H LTR MaLR 83 289 -120 318 304 36 0 chr11 45254355 45254467 -105529086 - MIR3 SINE MIR -33 175 60 1089 299 59 28 chr11 45255279 45255738 -105527815 - MLT1H LTR MaLR -54 495 23 2136 143 0 6 chr11 45256200 45256514 -105527039 - AluSx SINE Alu 0 312 1 1778 166 35 3 chr11 45256543 45256832 -105526721 + AluJo SINE Alu 2 299 -13 834 126 7 7 chr11 45256934 45257077 -105526476 - Charlie5 DNA MER1_type -27 2585 2443 1129 139 29 34 chr11 45258130 45258338 -105525215 - Tigger1 DNA MER2_type -5 2413 2207 2178 130 16 21 chr11 45258338 45258714 -105524839 + L1MA4 LINE L1 5325 5698 -605 799 164 0 0 chr11 45258720 45258854 -105524699 + Tigger1 DNA MER2_type 2280 2413 -5 3133 129 48 17 chr11 45258938 45259521 -105524032 + L1MA4 LINE L1 5693 6293 -7 14006 112 19 7 chr11 45259523 45261729 -105521824 - Tigger1 DNA MER2_type -185 2233 1 201 121 0 0 chr11 45262251 45262284 -105521269 + (CAA)n Simple_repeat Simple_repeat 1 33 0 198 350 43 34 chr11 45262510 45262627 -105520926 - MIR3 SINE MIR -81 127 10 2189 100 0 23 chr11 45264217 45264518 -105519035 - AluSc SINE Alu -15 294 1 281 255 9 19 chr11 45264619 45264725 -105518828 + LTR67 LTR ERVL 410 514 -43 249 280 56 28 chr11 45264729 45264836 -105518717 - LTR67 LTR ERVL -5 552 443 189 107 0 0 chr11 45265392 45265420 -105518133 + (ATG)n Simple_repeat Simple_repeat 2 29 0 324 340 87 24 chr11 45265427 45265633 -105517920 - MIR SINE MIR -13 249 31 298 317 11 60 chr11 45266540 45266723 -105516830 + LTR16C LTR ERVL 316 489 -2 273 323 90 55 chr11 45266737 45266979 -105516574 - MIR3 SINE MIR 0 262 15 2152 58 101 0 chr11 45267158 45267436 -105516117 - AluY SINE Alu -2 309 4 998 210 45 0 chr11 45267611 45267811 -105515742 - MIR SINE MIR -51 211 3 499 236 0 0 chr11 45268362 45268472 -105515081 - L1PA13 LINE L1 -6198 589 480 4312 132 16 1 chr11 45268472 45269148 -105514405 + L1PA15 LINE L1 5478 6163 -2 1362 246 38 20 chr11 45269225 45269676 -105513877 + L1MA9 LINE L1 5826 6284 -28 1721 167 0 38 chr11 45269678 45269971 -105513582 - AluJb SINE Alu -30 282 1 21 0 0 0 chr11 45269973 45269994 -105513559 + AT_rich Low_complexity Low_complexity 1 21 0 251 288 27 34 chr11 45270010 45270156 -105513397 - L1ME LINE L1 -583 5579 5435 519 318 29 34 chr11 45270608 45270847 -105512706 - MIR SINE MIR -12 250 13 575 302 37 29 chr11 45271126 45271371 -105512182 + MIR SINE MIR 1 247 -15 1591 271 59 14 chr11 45273805 45274314 -105509239 - MLT1H LTR MaLR 0 549 18 404 342 31 35 chr11 45275328 45275556 -105507997 - MIR SINE MIR -16 246 20 1988 140 0 29 chr11 45275983 45276297 -105507256 - AluSc SINE Alu -4 305 1 186 43 0 0 chr11 45276399 45276422 -105507131 + (TTA)n Simple_repeat Simple_repeat 2 24 0 641 316 72 0 chr11 45276747 45276984 -105506569 - L2 LINE L2 -941 2373 2120 2724 104 0 0 chr11 45277660 45278024 -105505529 + THE1B LTR MaLR 1 364 0 2827 182 26 9 chr11 45278165 45278704 -105504849 + MER44D DNA MER2_type 1 603 -2 1052 241 66 30 chr11 45278741 45279073 -105504480 - L2 LINE L2 0 3313 2970 293 82 20 0 chr11 45279401 45279450 -105504103 + (GA)n Simple_repeat Simple_repeat 2 51 0 467 314 0 0 chr11 45279668 45279786 -105503767 + MIR SINE MIR 16 133 -129 261 180 0 0 chr11 45279799 45279849 -105503704 + (CAT)n Simple_repeat Simple_repeat 3 52 0 264 327 168 0 chr11 45280560 45280661 -105502892 - MIR SINE MIR -134 128 11 459 299 59 21 chr11 45281785 45281972 -105501581 + MIR SINE MIR 20 213 -49 682 238 70 20 chr11 45282088 45282120 -105501433 + MER46C DNA MER2_type 83 112 -226 2763 83 11 11 chr11 45282120 45282495 -105501058 - THE1C LTR MaLR 0 375 1 682 238 70 20 chr11 45282495 45282706 -105500847 + MER46C DNA MER2_type 112 338 0 416 337 115 29 chr11 45284376 45284619 -105498934 + L2 LINE L2 2653 2916 -398 214 299 75 19 chr11 45284610 45284690 -105498863 + L2 LINE L2 3201 3290 -23 * 2112 98 11 0 chr11 45284690 45284965 -105498588 - AluSx SINE Alu -18 294 17 214 299 75 19 chr11 45284965 45284991 -105498562 + L2 LINE L2 3290 3313 0 23447 141 31 10 chr11 45285052 45290655 -105492898 + L1PA8A LINE L1 14 5802 -644 * 30376 61 1 1 chr11 45290653 45294706 -105488847 + L1P LINE L1 1 4054 -2092 5663 120 10 0 chr11 45294813 45295689 -105487864 + HSMAR2 DNA Mariner 417 1301 -1 301 229 183 23 chr11 45296472 45296603 -105486950 - MIR SINE MIR -7 255 104 630 210 7 21 chr11 45296719 45296862 -105486691 + MLT1J2 LTR MaLR 21 161 -289 1892 127 85 25 chr11 45298008 45298362 -105485191 - THE1C LTR MaLR 0 375 1 194 346 158 23 chr11 45298538 45298671 -105484882 - L2 LINE L2 0 3272 3122 246 313 53 67 chr11 45298806 45298956 -105484597 - L2 LINE L2 -222 3050 2903 27 29 0 0 chr11 45299320 45299354 -105484199 + AT_rich Low_complexity Low_complexity 1 34 0 243 298 172 7 chr11 45299761 45299912 -105483641 - MIR SINE MIR -1 261 86 188 227 0 23 chr11 45300014 45300058 -105483495 + L2 LINE L2 3230 3272 0 302 294 35 0 chr11 45301000 45301085 -105482468 - MIR SINE MIR -123 139 52 358 329 92 19 chr11 45301140 45301350 -105482203 + MIR SINE MIR 37 260 -2 373 284 203 14 chr11 45301471 45301619 -105481934 - MER5B DNA MER1_type -2 176 1 32 0 0 0 chr11 45302116 45302148 -105481405 + AT_rich Low_complexity Low_complexity 1 32 0 618 309 115 45 chr11 45302194 45302827 -105480726 + L2 LINE L2 2570 3264 -49 2334 99 51 43 chr11 45302827 45303199 -105480354 + THE1C LTR MaLR 1 375 0 618 309 115 45 chr11 45303199 45303253 -105480300 + L2 LINE L2 3264 3313 0 580 286 134 23 chr11 45303371 45303633 -105479920 - L2 LINE L2 0 3313 3023 699 281 36 22 chr11 45304974 45305198 -105478355 - MIR SINE MIR -16 246 20 1928 154 123 10 chr11 45305309 45305692 -105477861 + MSTA LTR MaLR 3 428 0 718 259 38 42 chr11 45306062 45306301 -105477252 + MIR SINE MIR 4 241 -21 587 314 172 15 chr11 45306351 45306752 -105476801 - MLT1K LTR MaLR -31 557 94 789 281 35 13 chr11 45307529 45307760 -105475793 - MIR SINE MIR 0 262 27 349 350 101 0 chr11 45307855 45308072 -105475481 + MIR SINE MIR 18 256 -6 1824 172 14 116 chr11 45308077 45308640 -105474913 + L1MA10 LINE L1 5828 6333 -1 2451 146 2 19 chr11 45308873 45309299 -105474254 - L1MD1 LINE L1 0 6242 5824 518 154 114 8 chr11 45309314 45309437 -105474116 - L1MA9 LINE L1 -4 6308 6173 301 118 0 0 chr11 45309448 45309499 -105474054 - L1MD1 LINE L1 -531 5828 5778 196 313 39 78 chr11 45310252 45310380 -105473173 + L2 LINE L2 3179 3301 -12 201 74 0 0 chr11 45310477 45310504 -105473049 + (T)n Simple_repeat Simple_repeat 1 27 0 183 366 49 0 chr11 45310559 45310641 -105472912 + MIR SINE MIR 18 103 -105 201 332 224 20 chr11 45311442 45311638 -105471915 - MIR SINE MIR -7 255 20 1363 221 65 22 chr11 45312926 45313293 -105470260 + MSTD LTR MaLR 3 385 -11 2856 237 10 18 chr11 45313302 45314031 -105469522 + MSTD-int LTR MaLR 2 724 -1011 1275 58 0 0 chr11 45314133 45314288 -105469265 + AluY SINE Alu 148 302 -9 4943 101 25 4 chr11 45314476 45315208 -105468345 + L1PA15 LINE L1 5417 6163 -2 612 294 112 47 chr11 45315220 45315352 -105468201 + L1ME LINE L1 2844 2966 -3180 1661 217 52 49 chr11 45315352 45315818 -105467735 - MLT1C LTR MaLR 0 467 1 612 294 112 47 chr11 45315818 45316151 -105467402 + L1ME LINE L1 2966 3339 -2807 1148 250 51 0 chr11 45316251 45316543 -105467010 + MER58B DNA MER1_type 19 325 -16 546 362 64 25 chr11 45316564 45317000 -105466553 + L1ME LINE L1 3383 3835 -2311 481 330 48 48 chr11 45317082 45317439 -105466114 + L1ME LINE L1 4059 4415 -1731 426 333 89 17 chr11 45317620 45318144 -105465409 + L1ME LINE L1 5255 5810 -311 821 230 5 60 chr11 45318858 45318982 -105464571 - MER5A DNA MER1_type 0 189 79 2065 77 0 4 chr11 45318982 45319243 -105464310 - AluY SINE Alu -11 300 41 821 230 5 60 chr11 45319243 45319318 -105464235 - MER5A DNA MER1_type -110 79 1 186 318 0 0 chr11 45319433 45319477 -105464076 - MIR3 SINE MIR -54 154 111 423 241 83 23 chr11 45319896 45319970 -105463583 - MIR SINE MIR -34 228 160 1550 126 0 13 chr11 45319970 45320209 -105463344 + MER46A DNA MER2_type 1 236 0 423 241 83 23 chr11 45320209 45320267 -105463286 - MIR SINE MIR -102 160 88 305 328 15 30 chr11 45320371 45320569 -105462984 - MLT2F LTR ERVL -28 635 441 740 201 26 3 chr11 45320691 45320882 -105462671 - MLT2E LTR ERVL -441 222 20 41513 44 4 2 chr11 45320960 45327102 -105456451 + L1PA3 LINE L1 1 6152 -3 1477 167 26 32 chr11 45327107 45327454 -105456099 - L1MA9 LINE L1 -30 6282 5938 226 307 109 62 chr11 45327455 45327647 -105455906 - MIR SINE MIR -60 202 2 2214 119 33 30 chr11 45328603 45328965 -105454588 - THE1B LTR MaLR -1 363 1 318 237 42 42 chr11 45328966 45329084 -105454469 - LTR16C LTR ERVL -9 482 365 937 250 5 15 chr11 45329685 45329889 -105453664 + MIR SINE MIR 12 213 -49 201 182 45 0 chr11 45329897 45329941 -105453612 + (CA)n Simple_repeat Simple_repeat 1 46 0 419 301 196 15 chr11 45330158 45330357 -105453196 + MIR SINE MIR 28 262 0 315 254 102 17 chr11 45330705 45330823 -105452730 - MIR SINE MIR -111 151 24 277 263 38 25 chr11 45330915 45330995 -105452558 - MIR SINE MIR -18 244 164 514 310 17 11 chr11 45331608 45331782 -105451771 - MIR SINE MIR -70 192 18 342 226 137 134 chr11 45331798 45332112 -105451441 - MLT1H LTR MaLR -4 545 231 456 173 19 19 chr11 45332145 45332315 -105451238 - AluY SINE Alu 0 376 207 349 234 13 0 chr11 45332318 45332395 -105451158 - MLT1H LTR MaLR -392 157 80 952 249 47 12 chr11 45333127 45333380 -105450173 + MIR SINE MIR 1 262 0 194 340 128 26 chr11 45333417 45333573 -105449980 - MER5A DNA MER1_type 0 189 18 359 322 128 6 chr11 45333828 45334008 -105449545 - MIR SINE MIR 0 262 61 700 297 81 26 chr11 45334093 45334440 -105449113 + MLT1J LTR MaLR 3 368 -143 4851 176 13 32 chr11 45334527 45334954 -105448599 + L1 LINE L1 4189 4623 -1523 2214 133 123 5 chr11 45334954 45335337 -105448216 + MSTA LTR MaLR 1 428 0 9246 142 16 34 chr11 45335339 45336941 -105446612 + MSTA-int LTR MaLR 3 1576 -4 1858 131 164 50 chr11 45336946 45337329 -105446224 + MSTA LTR MaLR 2 428 0 4851 176 13 32 chr11 45337329 45338034 -105445519 + L1 LINE L1 4628 5308 -838 1917 165 55 19 chr11 45338034 45338512 -105445041 + Tigger2 DNA MER2_type 1 2715 -3 458 160 0 11 chr11 45338514 45338608 -105444945 + L1M LINE L1 5307 5399 -901 12378 39 1 5 chr11 45338981 45341254 -105442299 + L1PA4 LINE L1 3877 6148 -7 902 329 96 36 chr11 45341335 45342377 -105441176 + L2 LINE L2 1986 3090 -182 234 62 0 0 chr11 45342439 45342471 -105441082 + (CA)n Simple_repeat Simple_repeat 2 33 0 3403 77 0 26 chr11 45342480 45342887 -105440666 + MLT2A1 LTR ERVL 1 396 -48 399 21 0 0 chr11 45342887 45342935 -105440618 + (TTATA)n Simple_repeat Simple_repeat 5 52 0 3403 77 0 26 chr11 45342935 45342983 -105440570 + MLT2A1 LTR ERVL 396 444 0 327 25 0 0 chr11 45343026 45343066 -105440487 + (TG)n Simple_repeat Simple_repeat 2 41 0 7159 29 1 2 chr11 45344599 45345498 -105438055 - L1PA4 LINE L1 -4 6151 5254 326 291 94 83 chr11 45345791 45346165 -105437388 + MLT1J LTR MaLR 105 482 -29 476 274 107 65 chr11 45346241 45346642 -105436911 + MLT1L LTR MaLR 140 557 -58 973 201 121 0 chr11 45346655 45346854 -105436699 - MER58A DNA MER1_type -1 223 1 1751 189 0 3 chr11 45346990 45347286 -105436267 + AluJb SINE Alu 1 295 -17 26 30 0 0 chr11 45347501 45347534 -105436019 + AT_rich Low_complexity Low_complexity 1 33 0 234 305 21 42 chr11 45348428 45348523 -105435030 - MIR SINE MIR -79 129 37 263 141 70 0 chr11 45348834 45348905 -105434648 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 274 264 33 0 chr11 45348921 45349042 -105434511 + L1ME4a LINE L1 5995 6119 -2 553 287 108 39 chr11 45350020 45350382 -105433171 + L2 LINE L2 2761 3148 -165 759 69 0 0 chr11 45350382 45350484 -105433069 - AluY SINE Alu -9 302 201 279 0 0 0 chr11 45350487 45350518 -105433035 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2674 41 0 0 chr11 45350519 45350838 -105432715 - L1PA3 LINE L1 -19 6136 5818 1731 35 0 0 chr11 45350838 45351036 -105432517 - AluY SINE Alu -113 198 1 204 253 313 20 chr11 45351077 45351176 -105432377 + L2 LINE L2 3184 3311 -2 2345 116 3 0 chr11 45351565 45351876 -105431677 + AluSx SINE Alu 1 312 0 402 240 0 0 chr11 45352569 45352669 -105430884 - MER103 DNA DNA -12 154 55 439 308 68 39 chr11 45352744 45352978 -105430575 + MIR SINE MIR 6 246 -16 1737 145 32 35 chr11 45354282 45354405 -105429148 - L1PA16 LINE L1 -9 6157 6035 2145 122 3 10 chr11 45354405 45354708 -105428845 - AluSx SINE Alu -9 303 3 1737 145 32 35 chr11 45354708 45354928 -105428625 - L1PA16 LINE L1 -131 6035 5815 565 307 50 34 chr11 45355024 45355262 -105428291 - MIR SINE MIR -1 261 20 716 315 67 4 chr11 45355334 45355572 -105427981 - MIR SINE MIR -3 259 7 1112 147 52 43 chr11 45355647 45355878 -105427675 - MLT1B LTR MaLR -4 386 154 180 0 0 0 chr11 45358119 45358139 -105425414 + (TTG)n Simple_repeat Simple_repeat 2 21 0 189 0 0 0 chr11 45358164 45358185 -105425368 + (TG)n Simple_repeat Simple_repeat 2 22 0 6712 65 6 0 chr11 45358185 45359148 -105424405 - L1PA8 LINE L1 -23 6149 5182 307 276 13 0 chr11 45359348 45359424 -105424129 - L2 LINE L2 -5 3267 3191 990 219 56 14 chr11 45359536 45359751 -105423802 + MER58A DNA MER1_type 1 224 0 267 171 53 92 chr11 45359934 45360010 -105423543 + L2 LINE L2 3232 3304 -9 267 54 0 0 chr11 45360585 45360622 -105422931 + (TG)n Simple_repeat Simple_repeat 2 38 0 2742 80 13 40 chr11 45361152 45361526 -105422027 - THE1B LTR MaLR 0 364 1 5355 158 21 11 chr11 45362036 45362943 -105420610 - MER49 LTR ERV1 0 923 8 389 273 180 0 chr11 45362945 45363073 -105420480 - MER5A DNA MER1_type -30 159 9 1066 207 0 11 chr11 45363091 45363279 -105420274 - MER5A DNA MER1_type -2 187 2 488 279 76 0 chr11 45363290 45363448 -105420105 - MER5B DNA MER1_type -2 176 7 288 256 78 22 chr11 45364215 45364305 -105419248 - MIR3 SINE MIR -19 189 95 526 289 159 0 chr11 45364438 45364639 -105418914 - MIR SINE MIR -21 241 9 2457 142 4 85 chr11 45364748 45365221 -105418332 + MER65A LTR ERV1 11 445 0 1459 215 81 9 chr11 45365308 45365629 -105417924 - MER2 DNA MER2_type 0 344 1 282 195 0 0 chr11 45365664 45365705 -105417848 - MER2 DNA MER2_type -304 41 1 240 309 0 12 chr11 45365835 45365916 -105417637 - MER94 DNA DNA -54 80 1 469 349 90 22 chr11 45366087 45366487 -105417066 - MLT1K LTR MaLR -53 562 99 391 265 71 41 chr11 45366714 45366910 -105416643 + MIR SINE MIR 34 235 -27 24 32 0 0 chr11 45367889 45367920 -105415633 + AT_rich Low_complexity Low_complexity 1 31 0 254 269 74 47 chr11 45367920 45368069 -105415484 - L1ME4a LINE L1 -5 6116 5964 514 321 36 0 chr11 45368161 45368357 -105415196 - L1ME4a LINE L1 -297 5824 5622 1885 131 47 20 chr11 45368475 45368772 -105414781 + AluSx SINE Alu 1 305 -7 2187 136 74 15 chr11 45369938 45370277 -105413276 + THE1B LTR MaLR 1 359 -5 206 314 161 24 chr11 45370394 45370518 -105413035 - L2 LINE L2 0 3272 3132 3304 120 119 18 chr11 45370586 45371159 -105412394 + LTR24C LTR ERV1 5 635 0 201 320 88 48 chr11 45371873 45371998 -105411555 + L2 LINE L2 2904 3033 -239 303 296 20 91 chr11 45372034 45372233 -105411320 - L2 LINE L2 0 3313 3129 2271 160 28 23 chr11 45372355 45372743 -105410810 + MLT1B LTR MaLR 1 390 0 270 258 151 19 chr11 45372744 45372903 -105410650 + L2 LINE L2 3127 3306 -7 2031 140 26 5 chr11 45374047 45374399 -105409154 + LTR7 LTR ERV1 48 450 0 406 286 128 15 chr11 45374801 45374934 -105408619 - MIR SINE MIR -112 150 3 509 244 153 34 chr11 45375214 45375390 -105408163 + MIR SINE MIR 35 231 -31 8410 118 19 12 chr11 45375465 45377131 -105406422 - L1P4 LINE L1 -497 5671 3994 412 184 0 0 chr11 45377150 45377226 -105406327 + L1PA16 LINE L1 6090 6165 -1 482 333 20 10 chr11 45378336 45378531 -105405022 + MER117 DNA MER1_type 1 197 0 585 168 72 16 chr11 45378588 45378713 -105404840 - L1MA7 LINE L1 -1 6290 6159 870 172 20 76 chr11 45379096 45379294 -105404259 + MER5A DNA MER1_type 1 187 -2 1957 204 8 102 chr11 45380215 45380734 -105402819 + MER70A LTR ERVL 1 470 -2 229 274 159 18 chr11 45383154 45383267 -105400286 + MLT1I LTR MaLR 16 144 -265 241 145 116 43 chr11 45383458 45383527 -105400026 + MLT1G1 LTR MaLR 505 578 -17 3668 82 9 0 chr11 45383565 45384014 -105399539 + MLT2A2 LTR ERVL 1 453 0 194 344 106 13 chr11 45384022 45384173 -105399380 + MIR SINE MIR 77 241 -21 1791 179 60 31 chr11 45384190 45384541 -105399012 + MLT1A1 LTR MaLR 1 361 -4 375 259 27 136 chr11 45384557 45384851 -105398702 - MIR SINE MIR 0 262 1 201 239 0 22 chr11 45385947 45385993 -105397560 + GA-rich Low_complexity Low_complexity 1 45 0 5121 128 52 14 chr11 45386277 45387592 -105395961 - Tigger1 DNA MER2_type -5 2413 953 2210 110 3 3 chr11 45387592 45387901 -105395652 + AluSx SINE Alu 1 309 -3 5121 128 52 14 chr11 45387901 45388255 -105395298 - Tigger1 DNA MER2_type -1465 953 614 294 222 49 124 chr11 45389019 45389204 -105394349 - L1MC4a LINE L1 -215 5906 5736 315 145 48 0 chr11 45389531 45389593 -105393960 + MIR SINE MIR 193 257 -5 396 335 71 27 chr11 45389603 45389899 -105393654 + L3 LINE CR1 118 426 -1151 1831 301 71 61 chr11 45390525 45391119 -105392434 - MER4A LTR ERV1 0 600 1 225 253 263 11 chr11 45391512 45391607 -105391946 + L2 LINE L2 3143 3261 -11 608 325 108 38 chr11 45391617 45391770 -105391783 + L3 LINE CR1 483 624 -953 4427 101 0 0 chr11 45391770 45392324 -105391229 + MER41A LTR ERV1 1 554 0 608 325 108 38 chr11 45392324 45392752 -105390801 + L3 LINE CR1 624 1105 -472 958 211 17 50 chr11 45392805 45393037 -105390516 - L1MA4 LINE L1 -1 6299 6061 222 118 0 0 chr11 45393037 45393071 -105390482 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1993 124 14 0 chr11 45393071 45393353 -105390200 - AluSx SINE Alu -24 288 3 958 211 17 50 chr11 45393353 45393417 -105390136 - L1MA4 LINE L1 -237 6063 6012 388 324 78 11 chr11 45393541 45393720 -105389833 + L3 LINE CR1 1328 1518 -59 244 281 12 12 chr11 45395397 45395479 -105388074 + LTR58 LTR ERV1 350 431 -248 1627 54 54 54 chr11 45396328 45396568 -105386985 + AluY SINE Alu 69 308 -3 415 232 64 24 chr11 45396680 45396805 -105386748 - MLT1J2 LTR MaLR -277 173 44 182 270 240 0 chr11 45397042 45397142 -105386411 - MIR SINE MIR -73 189 66 333 68 0 0 chr11 45398222 45398266 -105385287 + (TG)n Simple_repeat Simple_repeat 1 44 0 28 48 0 0 chr11 45398266 45398308 -105385245 + AT_rich Low_complexity Low_complexity 1 42 0 2729 104 16 19 chr11 45398764 45399140 -105384413 - THE1C LTR MaLR 0 375 1 370 325 142 30 chr11 45399172 45399341 -105384212 + MIR3 SINE MIR 21 208 0 2897 36 0 0 chr11 45399430 45399763 -105383790 - L1PA4 LINE L1 -1920 4226 3894 * 7575 29 1 0 chr11 45399760 45400647 -105382906 + L1PA4 LINE L1 4229 5116 -1030 2560 26 13 3 chr11 45400641 45400943 -105382610 - L1PA2 LINE L1 -515 5640 5336 * 4730 16 0 0 chr11 45400943 45401448 -105382105 + L1PA2 LINE L1 5647 6153 -2 7783 38 5 0 chr11 45401462 45402514 -105381039 + L1PA4 LINE L1 5098 6153 -2 396 292 115 73 chr11 45403569 45404072 -105379481 + L1M2 LINE L1 529 1050 -5799 349 275 0 0 chr11 45405611 45405691 -105377862 - L2 LINE L2 0 3313 3234 302 226 54 21 chr11 45405846 45405939 -105377614 + MLT1L LTR MaLR 143 238 -377 2274 199 24 13 chr11 45406032 45406499 -105377054 - L1M2 LINE L1 -6230 619 148 342 273 211 12 chr11 45407110 45407271 -105376282 - L2 LINE L2 -21 3292 3100 2169 298 50 25 chr11 45407339 45408186 -105375367 - L2 LINE L2 -369 2945 2078 225 122 24 0 chr11 45408317 45408358 -105375195 + L2 LINE L2 3270 3311 -2 352 276 82 0 chr11 45409955 45410053 -105373500 + MLT1J2 LTR MaLR 343 448 -2 222 136 0 0 chr11 45410295 45410339 -105373214 + (TG)n Simple_repeat Simple_repeat 2 45 0 648 163 0 20 chr11 45410394 45410541 -105373012 + CT-rich Low_complexity Low_complexity 4 147 0 288 330 28 9 chr11 45411063 45411169 -105372384 - MIR SINE MIR -61 147 40 439 248 21 41 chr11 45411289 45411434 -105372119 + MLT1J1 LTR MaLR 295 436 -10 537 309 129 4 chr11 45411605 45411838 -105371715 + MLT1K LTR MaLR 322 583 -5 191 408 27 27 chr11 45412490 45412713 -105370840 + L2 LINE L2 2831 3053 -219 309 294 65 0 chr11 45412895 45412987 -105370566 - MIR SINE MIR -163 99 2 249 288 48 56 chr11 45413038 45413163 -105370390 + L2 LINE L2 3190 3313 0 198 325 72 12 chr11 45413975 45414058 -105369495 - MIR3 SINE MIR -24 184 97 381 284 60 8 chr11 45414559 45414693 -105368860 - MIR SINE MIR -49 213 73 262 266 31 0 chr11 45414866 45414930 -105368623 + MIR SINE MIR 189 254 -8 769 293 9 4 chr11 45415663 45415888 -105367665 + MIR SINE MIR 3 228 -34 462 225 0 0 chr11 45416105 45416194 -105367359 + MER81 DNA DNA 1 89 -25 707 242 75 83 chr11 45416304 45416963 -105366590 - L1MC5 LINE L1 -890 7071 6414 26 30 0 0 chr11 45417324 45417357 -105366196 + AT_rich Low_complexity Low_complexity 1 33 0 2189 103 14 0 chr11 45417669 45417960 -105365593 - AluY SINE Alu -16 295 1 543 287 61 0 chr11 45418325 45418506 -105365047 - HAL1 LINE L1 -994 1513 1322 254 243 53 130 chr11 45418756 45418925 -105364628 - HAL1 LINE L1 -2341 166 11 778 221 5 19 chr11 45420001 45420209 -105363344 - L1PA13 LINE L1 -560 5603 5399 3793 115 2 5 chr11 45420209 45420783 -105362770 + L1PA13 LINE L1 5592 6163 0 691 238 130 13 chr11 45420824 45421055 -105362498 - MIR SINE MIR 0 262 5 305 368 23 15 chr11 45421434 45421567 -105361986 + MIR3 SINE MIR 75 208 0 191 330 57 47 chr11 45422015 45422121 -105361432 - MIR SINE MIR -109 153 47 2626 91 8 0 chr11 45422330 45422682 -105360871 + THE1A LTR MaLR 1 355 0 8708 111 5 3 chr11 45422682 45423975 -105359578 + THE1A-int LTR MaLR 1 1295 -285 1602 94 9 0 chr11 45423975 45424208 -105359345 + THE1A LTR MaLR 121 355 0 1154 228 48 91 chr11 45424545 45424738 -105358815 + L2 LINE L2 2175 2375 -939 510 239 9 0 chr11 45424738 45424851 -105358702 + MER81 DNA DNA 1 114 0 450 0 0 0 chr11 45424851 45424901 -105358652 + (CA)n Simple_repeat Simple_repeat 2 51 0 1154 228 48 91 chr11 45424901 45425100 -105358453 + L2 LINE L2 2373 2551 -763 314 296 115 45 chr11 45425098 45425341 -105358212 + L2 LINE L2 3050 3309 -4 * 180 262 0 0 chr11 45426855 45426897 -105356656 - L2 LINE L2 -14 3299 3258 1170 273 128 38 chr11 45427625 45428239 -105355314 + L2 LINE L2 2618 3297 -16 211 200 0 44 chr11 45428206 45428251 -105355302 + MIR SINE MIR 220 262 0 * 642 288 106 25 chr11 45428479 45428715 -105354838 - MIR SINE MIR 0 262 8 579 213 12 41 chr11 45428715 45428884 -105354669 - MER106B DNA MER1_type 0 1059 896 254 315 154 15 chr11 45429010 45429140 -105354413 + L2 LINE L2 3118 3265 -7 699 269 50 50 chr11 45429701 45430058 -105353495 + LTR33 LTR ERVL 1 357 -164 2296 226 5 51 chr11 45430060 45430644 -105352909 + MER74A LTR ERVL 1 557 -1 256 236 19 28 chr11 45430658 45430764 -105352789 + LTR33 LTR ERVL 413 517 -4 256 231 46 0 chr11 45430890 45430955 -105352598 + L2 LINE L2 3232 3299 -14 279 360 154 0 chr11 45431036 45431172 -105352381 - MIR3 SINE MIR -11 197 41 710 307 19 5 chr11 45431244 45431456 -105352097 - MIR SINE MIR -32 230 16 1813 126 29 26 chr11 45432706 45433056 -105350497 + L1MC2 LINE L1 5985 6335 -9 386 220 55 9 chr11 45433212 45433321 -105350232 - MIR SINE MIR 0 262 149 221 218 18 18 chr11 45433358 45433413 -105350140 - L2 LINE L2 -37 3276 3222 194 395 58 0 chr11 45433411 45433497 -105350056 - MIR SINE MIR -157 105 15 * 434 294 0 49 chr11 45433500 45433643 -105349910 + MIR SINE MIR 67 202 -60 1364 227 131 52 chr11 45433888 45434068 -105349485 + MLT1E LTR MaLR 3 167 -426 2304 101 3 0 chr11 45434068 45434365 -105349188 - AluY SINE Alu -13 298 1 1364 227 131 52 chr11 45434365 45434727 -105348826 + MLT1E LTR MaLR 167 593 0 287 321 160 0 chr11 45435100 45435206 -105348347 - L2 LINE L2 0 3313 3191 25 0 0 0 chr11 45435445 45435470 -105348083 + AT_rich Low_complexity Low_complexity 1 25 0 429 269 67 0 chr11 45435476 45435595 -105347958 - L2 LINE L2 0 3313 3187 529 300 92 38 chr11 45435646 45435749 -105347804 - LTR33 LTR ERVL 0 521 425 1316 144 43 0 chr11 45435749 45435957 -105347596 + MER20 DNA MER1_type 3 219 0 529 300 92 38 chr11 45435957 45436320 -105347233 - LTR33 LTR ERVL -96 425 3 1456 154 163 30 chr11 45436405 45436736 -105346817 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr11 45437156 45437177 -105346376 + AT_rich Low_complexity Low_complexity 1 21 0 2733 133 17 5 chr11 45437686 45438106 -105345447 + MER61B LTR ERV1 1 425 0 312 315 9 18 chr11 45438638 45438749 -105344804 - MIR SINE MIR -113 149 40 186 196 22 22 chr11 45439389 45439435 -105344118 - L2 LINE L2 0 3272 3227 * 970 228 33 37 chr11 45439401 45439642 -105343911 - MIR SINE MIR -5 257 18 1639 147 49 7 chr11 45441034 45441319 -105342234 - AluSx SINE Alu -15 297 1 226 274 53 32 chr11 45441323 45441418 -105342135 + MIR SINE MIR 110 206 -56 302 277 21 21 chr11 45442558 45442652 -105340901 - MIR SINE MIR -98 164 71 12673 148 14 10 chr11 45442768 45446075 -105337478 - L1MA3 LINE L1 -166 6139 2816 594 211 54 0 chr11 45446225 45446372 -105337181 - L1MA10 LINE L1 0 6334 6180 302 306 126 16 chr11 45446410 45446593 -105336960 - L1MCb LINE L1 -3739 2825 2623 796 301 49 0 chr11 45449093 45449319 -105334234 + MIR SINE MIR 5 241 -21 889 97 30 0 chr11 45449347 45449512 -105334041 + GA-rich Low_complexity Low_complexity 2 171 0 2216 124 0 3 chr11 45450164 45450463 -105333090 + AluSg SINE Alu 1 298 -12 183 42 0 0 chr11 45450463 45450487 -105333066 + (TA)n Simple_repeat Simple_repeat 2 25 0 246 303 330 16 chr11 45450940 45451128 -105332425 + MIR SINE MIR 13 259 -3 401 350 34 21 chr11 45451242 45451479 -105332074 + L2 LINE L2 2619 2858 -456 416 272 18 0 chr11 45451550 45451664 -105331889 - HAL1 LINE L1 -726 1781 1666 340 265 154 0 chr11 45451682 45451818 -105331735 - HAL1 LINE L1 -895 1612 1456 379 211 55 31 chr11 45451875 45452003 -105331550 + L2 LINE L2 1290 1420 -1894 3996 215 50 18 chr11 45452058 45453438 -105330115 - L1MCb LINE L1 -4850 1195 4 1825 269 77 49 chr11 45453460 45454200 -105329353 + L2 LINE L2 1474 2234 -1080 794 231 175 14 chr11 45454200 45454486 -105329067 + MLT1J2 LTR MaLR 1 332 -118 198 275 77 11 chr11 45454748 45454839 -105328714 - L2 LINE L2 -405 2909 2813 3677 148 80 5 chr11 45455196 45455857 -105327696 + MER50 LTR ERV1 1 711 -23 1010 239 162 24 chr11 45456653 45457029 -105326524 + MLT1J2 LTR MaLR 1 428 -22 238 289 78 22 chr11 45457558 45457648 -105325905 - MIR3 SINE MIR -19 189 95 540 289 159 0 chr11 45457781 45457982 -105325571 - MIR SINE MIR -21 241 9 399 283 197 7 chr11 45459113 45459265 -105324288 + MER5A DNA MER1_type 9 189 0 534 259 30 0 chr11 45459439 45459574 -105323979 - MIR SINE MIR -17 245 107 388 267 10 0 chr11 45459728 45459829 -105323724 + MIR SINE MIR 150 251 -11 228 215 0 62 chr11 45459829 45459894 -105323659 + CT-rich Low_complexity Low_complexity 1 61 0 825 220 85 18 chr11 45460292 45460515 -105323038 + MIR SINE MIR 6 243 -19 257 317 106 7 chr11 45460536 45460678 -105322875 + MIR SINE MIR 101 256 -6 896 239 118 17 chr11 45460987 45461284 -105322269 + L2 LINE L2 2230 2556 -758 923 124 0 32 chr11 45461573 45461759 -105321794 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1206 42 30 0 chr11 45461903 45462026 -105321527 + (TTTC)n Simple_repeat Simple_repeat 1 298 0 1206 42 30 0 chr11 45462026 45462193 -105321360 + (TTTC)n Simple_repeat Simple_repeat 2 173 0 1263 307 68 4 chr11 45462398 45462846 -105320707 + L2 LINE L2 2538 3016 -297 220 150 0 0 chr11 45462880 45462920 -105320633 + L2 LINE L2 3274 3313 0 1294 255 146 98 chr11 45462934 45463397 -105320156 - HAL1 LINE L1 -1045 1462 1023 1638 47 0 11 chr11 45463397 45463587 -105319966 + L1PA3 LINE L1 5967 6154 -1 1294 255 146 98 chr11 45463587 45464139 -105319414 - HAL1 LINE L1 -1484 1023 367 1548 193 7 33 chr11 45464139 45464445 -105319108 - AluJo SINE Alu -7 305 8 1294 255 146 98 chr11 45464445 45464748 -105318805 - HAL1 LINE L1 -2140 367 80 17625 65 1 1 chr11 45464749 45466954 -105316599 + L1P LINE L1 1 2205 -3941 3548 226 54 72 chr11 45467525 45467641 -105315912 - L1MEc LINE L1 -5198 1198 1081 2295 96 7 0 chr11 45467641 45467944 -105315609 - AluY SINE Alu -6 305 1 3548 226 54 72 chr11 45467944 45468583 -105314970 - L1MEc LINE L1 -5315 1081 469 2076 118 23 10 chr11 45468583 45468888 -105314665 - AluSc SINE Alu 0 309 1 3548 226 54 72 chr11 45468888 45469315 -105314238 - L1MEc LINE L1 -5927 469 36 613 243 8 68 chr11 45469318 45469553 -105314000 + MER20B DNA MER1_type 561 781 -2 609 213 16 0 chr11 45469565 45469687 -105313866 + MER94 DNA DNA 1 124 -10 216 158 0 0 chr11 45470060 45470098 -105313455 + T-rich Low_complexity Low_complexity 1 38 0 984 249 32 12 chr11 45470191 45470444 -105313109 - MIR SINE MIR 0 262 5 1126 59 0 40 chr11 45470523 45470675 -105312878 + L1PA4 LINE L1 6007 6152 -3 413 294 79 75 chr11 45470880 45471349 -105312204 - L2 LINE L2 -837 2477 2007 1863 191 87 30 chr11 45471422 45471857 -105311696 - MLT1C LTR MaLR 0 467 8 831 186 20 138 chr11 45473221 45473302 -105310251 + MER20 DNA MER1_type 1 90 -129 1667 143 11 4 chr11 45473302 45473568 -105309985 - L1MB3 LINE L1 -7 6176 5909 831 186 20 138 chr11 45473568 45473685 -105309868 + MER20 DNA MER1_type 90 167 -52 2195 29 8 0 chr11 45473685 45473930 -105309623 + L1PA4 LINE L1 5909 6155 0 831 186 20 138 chr11 45473930 45473977 -105309576 + MER20 DNA MER1_type 167 218 -1 559 253 55 32 chr11 45474014 45474310 -105309243 - MLT1I LTR MaLR -15 394 61 1942 152 0 25 chr11 45474428 45474744 -105308809 - AluJb SINE Alu -4 308 1 307 244 133 0 chr11 45475147 45475237 -105308316 - MER5B DNA MER1_type -2 176 75 457 332 69 10 chr11 45475589 45475791 -105307762 - MIR SINE MIR 0 262 49 297 201 138 94 chr11 45476688 45476847 -105306706 - HAL1 LINE L1 -2295 212 47 1797 128 38 21 chr11 45477229 45477519 -105306034 - AluSx SINE Alu -17 295 1 239 253 91 50 chr11 45477895 45477943 -105305610 - MIR3 SINE MIR -8 200 155 370 315 66 0 chr11 45477943 45478124 -105305429 + MER117 DNA MER1_type 4 196 -1 239 253 91 50 chr11 45478124 45478174 -105305379 - MIR3 SINE MIR -53 155 98 722 143 4 2 chr11 45478315 45478574 -105304979 + AluSx SINE Alu 1 311 -1 517 250 15 0 chr11 45478581 45478713 -105304840 - L2 LINE L2 0 3313 3180 1163 259 110 23 chr11 45478922 45479312 -105304241 + L2 LINE L2 2885 3308 -5 1410 170 9 0 chr11 45479791 45480020 -105303533 + AluJb SINE Alu 68 298 -14 270 282 0 14 chr11 45480023 45480094 -105303459 - MIR3 SINE MIR -27 181 112 555 241 4 86 chr11 45480647 45480879 -105302674 - MER102a DNA MER1_type -3 327 115 257 105 0 0 chr11 45481240 45481278 -105302275 - Alu SINE Alu -24 276 239 1301 187 123 56 chr11 45482166 45482508 -105301045 - MLT1A1 LTR MaLR 0 365 1 393 243 121 59 chr11 45482561 45482783 -105300770 + MIR SINE MIR 20 262 0 475 231 43 0 chr11 45483061 45483178 -105300375 - L1MD3 LINE L1 -5 7990 7869 324 262 154 86 chr11 45483219 45483440 -105300113 - L1ME4a LINE L1 -226 5895 5660 1857 167 7 10 chr11 45483440 45483740 -105299813 - AluJo SINE Alu -11 301 3 6056 88 5 2 chr11 45483763 45484585 -105298968 - L1PA10 LINE L1 -4 6164 5341 2010 179 25 8 chr11 45484646 45485042 -105298511 + HSMAR2 DNA Mariner 1 403 -899 1793 165 0 11 chr11 45486088 45486373 -105297180 + AluJo SINE Alu 1 282 -30 229 333 29 10 chr11 45487900 45488002 -105295551 + L2 LINE L2 2948 3051 -221 650 293 22 31 chr11 45488652 45488874 -105294679 - MIR SINE MIR -32 230 11 430 264 95 66 chr11 45489589 45489831 -105293722 - MIR SINE MIR -10 252 4 1059 239 225 24 chr11 45491030 45491448 -105292105 + MLT1D LTR MaLR 1 502 -3 509 289 8 0 chr11 45491811 45491932 -105291621 + MIR SINE MIR 13 134 -128 202 288 0 9 chr11 45492050 45492117 -105291436 - MIR SINE MIR -69 139 74 6034 125 24 5 chr11 45492358 45493986 -105289567 - L1PA15 LINE L1 0 6165 4506 6299 241 78 33 chr11 45494113 45495770 -105287783 + MSTD-int LTR MaLR 2 1733 -2 1801 167 51 94 chr11 45495772 45496186 -105287367 + MSTD LTR MaLR 1 396 0 599 171 9 0 chr11 45496460 45496565 -105286988 + MSTD-int LTR MaLR 1628 1733 -2 1637 169 58 101 chr11 45496567 45496981 -105286572 + MSTD LTR MaLR 1 396 0 256 326 31 31 chr11 45497067 45497165 -105286388 - MIR3 SINE MIR -105 103 6 338 336 10 0 chr11 45497949 45498053 -105285500 + L2 LINE L2 2194 2298 -1016 885 233 155 28 chr11 45498314 45498631 -105284922 + L1MC/D LINE L1 5282 5638 -2170 210 195 110 0 chr11 45498869 45498951 -105284602 + L2 LINE L2 3112 3202 -111 415 336 22 0 chr11 45499402 45499628 -105283925 - L1MC4a LINE L1 -1906 5902 5672 750 282 48 31 chr11 45499634 45499985 -105283568 - L1MC4a LINE L1 -2196 5612 5256 2231 91 0 10 chr11 45500321 45500617 -105282936 - AluY SINE Alu -18 293 1 370 333 0 14 chr11 45500923 45501064 -105282489 + MIR SINE MIR 124 262 0 250 143 0 0 chr11 45501070 45501112 -105282441 - L1MA6 LINE L1 -6 6294 6253 1323 236 137 22 chr11 45501175 45501591 -105281962 + MLT1K LTR MaLR 95 558 -30 2296 84 0 10 chr11 45501658 45501955 -105281598 - AluY SINE Alu -17 294 1 710 235 8 0 chr11 45501967 45502099 -105281454 - FLAM_A SINE Alu 0 133 1 420 20 0 0 chr11 45502514 45502563 -105280990 + (CA)n Simple_repeat Simple_repeat 1 49 0 206 159 0 23 chr11 45502903 45502947 -105280606 + (TG)n Simple_repeat Simple_repeat 1 43 0 276 377 49 16 chr11 45503054 45503176 -105280377 + L2 LINE L2 3101 3226 -46 16114 27 3 1 chr11 45503669 45506235 -105277318 - L1PA3 LINE L1 -5 6150 3581 398 196 80 72 chr11 45506593 45506731 -105276822 - MLT1H LTR MaLR 0 549 411 1212 110 25 2 chr11 45507032 45507223 -105276330 - pTR5 LTR ERV1 -2044 394 66 352 189 33 22 chr11 45507223 45507313 -105276240 - LTR30 LTR ERV1 -80 642 552 5682 115 47 67 chr11 45507314 45508499 -105275054 - pTR5 LTR ERV1 -406 2032 741 230 245 0 0 chr11 45509250 45509299 -105274254 + MIR SINE MIR 182 230 -32 192 25 0 75 chr11 45509495 45509535 -105274018 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 373 344 26 7 chr11 45510058 45510209 -105273344 + MIR SINE MIR 33 186 -76 * 546 345 42 32 chr11 45510199 45510521 -105273032 + L2 LINE L2 2707 3035 -278 468 221 19 0 chr11 45510528 45510682 -105272871 + (CAT)n Simple_repeat Simple_repeat 3 159 0 770 257 34 10 chr11 45510692 45510898 -105272655 - MIR SINE MIR -7 255 45 309 292 73 52 chr11 45511025 45511217 -105272336 + L2 LINE L2 3118 3313 0 42887 38 25 2 chr11 45511816 45517859 -105265694 - L1PA3 LINE L1 0 6155 1 1383 78 6 0 chr11 45517926 45518105 -105265448 - L1PA8 LINE L1 0 6172 5993 333 311 33 50 chr11 45518553 45518733 -105264820 - L1ME3A LINE L1 -220 5950 5774 783 273 164 45 chr11 45518978 45519469 -105264084 - L2 LINE L2 0 3313 2730 782 249 53 0 chr11 45520730 45520899 -105262654 - MER45A DNA AcHobo 0 178 1 365 338 107 27 chr11 45520957 45521182 -105262371 + MIR SINE MIR 19 261 -1 1996 134 0 0 chr11 45521798 45522073 -105261480 + AluSx SINE Alu 3 277 -35 888 95 29 15 chr11 45522642 45522779 -105260774 - L1MA8 LINE L1 -12 6279 6141 236 314 19 29 chr11 45522785 45522890 -105260663 - MLT1J LTR MaLR -180 331 228 1383 136 19 0 chr11 45525084 45525290 -105258263 - AluSc SINE Alu -12 297 88 2161 179 92 3 chr11 45525359 45525750 -105257803 + MSTB LTR MaLR 1 426 0 2166 122 3 13 chr11 45526710 45527022 -105256531 + AluSg1 SINE Alu 1 309 0 1171 153 0 0 chr11 45527022 45527192 -105256361 + AluSg/x SINE Alu 134 303 -9 301 295 0 0 chr11 45527199 45527277 -105256276 - MER45 DNA AcHobo -74 1507 1430 * 3137 235 21 37 chr11 45527264 45527530 -105256023 - MER45B DNA AcHobo -240 800 531 1292 203 54 103 chr11 45527530 45527939 -105255614 - MLT1B LTR MaLR 0 390 2 3137 235 21 37 chr11 45527939 45528434 -105255119 - MER45B DNA AcHobo -509 531 51 323 340 78 44 chr11 45528506 45528777 -105254776 - MLT1J LTR MaLR -8 503 224 22 0 0 0 chr11 45528821 45528843 -105254710 + AT_rich Low_complexity Low_complexity 1 22 0 361 211 0 13 chr11 45528953 45529029 -105254524 - MLT1L LTR MaLR -537 78 4 * 784 293 110 55 chr11 45529029 45529550 -105254003 - MLT1G1 LTR MaLR -23 572 23 512 229 51 17 chr11 45530070 45530245 -105253308 + Charlie7 DNA MER1_type 2429 2609 -3 2487 76 0 3 chr11 45530375 45530678 -105252875 + AluY SINE Alu 1 302 -9 688 313 31 20 chr11 45530813 45530980 -105252573 - L2 LINE L2 -38 3275 3102 2137 128 3 3 chr11 45530980 45531292 -105252261 + AluSx SINE Alu 1 312 0 688 313 31 20 chr11 45531292 45531418 -105252135 - L2 LINE L2 -211 3102 2979 2145 115 7 0 chr11 45531486 45531781 -105251772 - AluSq SINE Alu -16 297 1 2383 149 65 34 chr11 45532204 45532619 -105250934 + MSTA LTR MaLR 1 428 0 611 267 54 32 chr11 45532675 45532896 -105250657 - LTR16B LTR ERVL -2 462 237 186 43 0 0 chr11 45533339 45533362 -105250191 + (TG)n Simple_repeat Simple_repeat 2 24 0 386 247 32 0 chr11 45534397 45534490 -105249063 - MIR3 SINE MIR -9 199 104 219 263 95 21 chr11 45534477 45534572 -105248981 + MIR3 SINE MIR 5 106 -102 * 7071 177 20 17 chr11 45535316 45537306 -105246247 + L1PA14 LINE L1 4079 6088 -73 2314 133 27 29 chr11 45537306 45537682 -105245871 + THE1C LTR MaLR 1 375 0 7071 177 20 17 chr11 45537682 45537755 -105245798 + L1PA14 LINE L1 6088 6159 -2 1547 162 28 4 chr11 45538114 45538367 -105245186 - AluSg SINE Alu -2 308 50 198 380 13 0 chr11 45539212 45539291 -105244262 - L2 LINE L2 -5 3267 3188 2772 73 41 0 chr11 45539568 45539909 -105243644 + THE1A LTR MaLR 1 355 0 246 346 49 43 chr11 45539925 45540087 -105243466 - L2 LINE L2 -208 3064 2902 7439 106 7 5 chr11 45540739 45541820 -105241733 - L1P LINE L1 -3188 2958 1875 * 11918 88 2 2 chr11 45541818 45543427 -105240126 + L1PA7 LINE L1 2996 4605 -1541 6785 72 0 0 chr11 45543427 45544243 -105239310 + L1PA7 LINE L1 5333 6149 -5 303 221 18 55 chr11 45544578 45544626 -105238927 + (TATAA)n Simple_repeat Simple_repeat 5 53 -108 2970 139 14 2 chr11 45544626 45545049 -105238504 + MSTA LTR MaLR 1 428 0 303 221 18 55 chr11 45545049 45545163 -105238390 + (TATAA)n Simple_repeat Simple_repeat 53 161 0 249 341 36 22 chr11 45545382 45545520 -105238033 + MIR SINE MIR 13 152 -110 1065 264 10 16 chr11 45545734 45546037 -105237516 + AluY SINE Alu 1 301 0 236 294 0 0 chr11 45546136 45546228 -105237325 + L1MEc LINE L1 1162 1253 -5143 411 250 57 28 chr11 45546238 45546414 -105237139 - MER20B DNA MER1_type -156 627 447 235 313 48 0 chr11 45546438 45546521 -105237032 - MER20B DNA MER1_type -45 174 88 320 202 9 101 chr11 45546624 45546733 -105236820 + MER58C DNA MER1_type 44 142 -73 244 250 12 25 chr11 45546733 45546813 -105236740 + GA-rich Low_complexity Low_complexity 2 80 0 1474 148 86 41 chr11 45546918 45547209 -105236344 - AluJo SINE Alu -4 308 5 1977 261 69 34 chr11 45547242 45547883 -105235670 - MLT2F LTR ERVL 0 663 1 186 267 44 0 chr11 45548361 45548406 -105235147 - L2 LINE L2 -12 3260 3214 336 237 108 0 chr11 45549010 45549103 -105234450 - L2 LINE L2 0 3313 3211 1860 60 0 0 chr11 45549393 45549611 -105233942 - L1PA7 LINE L1 -2 6152 5935 873 166 7 0 chr11 45549616 45549767 -105233786 + L1MB2 LINE L1 6010 6161 -10 2062 192 115 0 chr11 45549949 45550496 -105233057 - SATR1 Satellite Satellite -4 609 1 2193 168 102 53 chr11 45550525 45551591 -105231962 - SATR1 Satellite Satellite 0 1117 1 2328 177 120 22 chr11 45551616 45552493 -105231060 - SATR1 Satellite Satellite 0 963 1 2473 138 119 0 chr11 45552521 45552941 -105230612 - SATR1 Satellite Satellite 0 470 1 2262 155 119 2 chr11 45552970 45553383 -105230170 - SATR1 Satellite Satellite 0 470 10 427 231 7 36 chr11 45553400 45553707 -105229846 + (TTA)n Simple_repeat Simple_repeat 1 297 0 2292 167 83 18 chr11 45553707 45554803 -105228750 + SATR1 Satellite Satellite 1 1167 -92 2510 155 107 0 chr11 45554828 45555400 -105228153 + SATR1 Satellite Satellite 1 632 -4 2446 176 114 19 chr11 45555434 45561506 -105222047 - SATR1 Satellite Satellite 0 6651 1 1637 215 83 0 chr11 45561517 45561856 -105221697 - SATR1 Satellite Satellite -87 383 17 238 179 21 42 chr11 45561864 45561959 -105221594 + (TAA)n Simple_repeat Simple_repeat 2 94 0 353 229 11 44 chr11 45562036 45562219 -105221334 + (TTA)n Simple_repeat Simple_repeat 2 178 0 2406 172 107 4 chr11 45562237 45564263 -105219290 + SATR1 Satellite Satellite 1 2235 -93 7048 60 26 0 chr11 45564303 45565174 -105218379 - MER11D LTR ERVK -3 894 1 16181 42 1 1 chr11 45565174 45567214 -105216339 - HERVK11D LTR ERVK 0 7752 5711 * 17962 36 1 1 chr11 45567208 45569455 -105214098 - HERVK11D LTR ERVK -2432 5320 3073 6825 45 1 0 chr11 45569455 45570316 -105213237 - HERVK11D LTR ERVK -6890 862 1 6919 69 28 0 chr11 45570316 45571189 -105212364 - MER11D LTR ERVK 0 897 1 2020 191 102 5 chr11 45571189 45572363 -105211190 - SATR1 Satellite Satellite -2 1287 1 1639 183 166 10 chr11 45572395 45572859 -105210694 - SATR1 Satellite Satellite -1 536 1 259 202 5 78 chr11 45572860 45573053 -105210500 + (TTA)n Simple_repeat Simple_repeat 1 179 0 30 0 0 0 chr11 45573072 45573102 -105210451 + AT_rich Low_complexity Low_complexity 1 30 0 236 229 14 42 chr11 45573106 45573250 -105210303 + (TTA)n Simple_repeat Simple_repeat 3 142 0 2176 175 96 2 chr11 45573252 45575078 -105208475 + SATR1 Satellite Satellite 1 1998 -419 312 222 148 0 chr11 45575457 45575538 -105208015 + MIR SINE MIR 49 141 -121 682 254 23 12 chr11 45575728 45575901 -105207652 - MER5B DNA MER1_type -3 175 1 4393 122 17 30 chr11 45575979 45576360 -105207193 + L1MA5 LINE L1 5541 5908 -392 1741 146 134 27 chr11 45576360 45576689 -105206864 + THE1B LTR MaLR 1 364 0 4393 122 17 30 chr11 45576689 45577077 -105206476 + L1MA5 LINE L1 5908 6300 0 282 274 96 37 chr11 45577139 45577274 -105206279 - MIR SINE MIR -8 254 112 309 317 127 7 chr11 45577359 45577501 -105206052 + MIR3 SINE MIR 19 177 -31 236 230 88 90 chr11 45577502 45577615 -105205938 + MIR SINE MIR 42 149 -59 598 366 30 9 chr11 45578596 45578828 -105204725 + MIR SINE MIR 7 243 -19 339 350 68 17 chr11 45578839 45579016 -105204537 + MIR SINE MIR 53 238 -24 273 312 156 9 chr11 45579096 45579205 -105204348 + L2 LINE L2 3143 3267 -5 1457 220 110 17 chr11 45579320 45579738 -105203815 + MLT2B1 LTR ERVL 1 457 -63 300 27 0 0 chr11 45579740 45579777 -105203776 + (TG)n Simple_repeat Simple_repeat 2 38 0 656 328 45 35 chr11 45579999 45580313 -105203240 - L3 LINE CR1 -1 1576 1260 3325 74 9 14 chr11 45581666 45582112 -105201441 - MLT2A1 LTR ERVL 0 444 1 28 29 0 0 chr11 45582680 45582715 -105200838 + AT_rich Low_complexity Low_complexity 1 35 0 190 304 75 60 chr11 45582762 45582963 -105200590 + L2 LINE L2 2805 3008 -264 538 268 60 6 chr11 45583376 45583544 -105200009 + MIR SINE MIR 65 241 -21 221 266 55 64 chr11 45583745 45583822 -105199731 + L2 LINE L2 3202 3279 -34 2289 182 51 27 chr11 45583822 45584311 -105199242 + MLT1D LTR MaLR 5 505 0 221 266 55 64 chr11 45584311 45584342 -105199211 + L2 LINE L2 3279 3309 -4 1647 191 24 3 chr11 45584370 45584664 -105198889 + AluJo SINE Alu 1 300 -12 396 258 8 16 chr11 45584806 45584930 -105198623 - LTR67 LTR ERVL 0 557 435 1668 208 96 28 chr11 45585982 45586419 -105197134 + MLT1C LTR MaLR 1 467 0 1881 132 48 58 chr11 45586581 45586960 -105196593 - THE1C LTR MaLR 0 375 1 913 121 20 13 chr11 45587010 45587159 -105196394 + L1PA16 LINE L1 6008 6157 -9 202 235 20 0 chr11 45587812 45587863 -105195690 - L2 LINE L2 0 3313 3262 925 239 109 62 chr11 45588004 45588204 -105195349 + L1ME LINE L1 4564 4753 -1393 2341 107 0 0 chr11 45588204 45588503 -105195050 + AluSg SINE Alu 1 299 -11 925 239 109 62 chr11 45588503 45588963 -105194590 + L1ME LINE L1 4753 5255 -891 3314 100 11 2 chr11 45589203 45589652 -105193901 - MLT2A2 LTR ERVL 0 453 1 509 249 104 66 chr11 45590670 45591055 -105192498 - MLT1G LTR MaLR -38 557 107 308 248 57 47 chr11 45591059 45591277 -105192276 + L1ME LINE L1 5653 5885 -285 29 28 0 0 chr11 45591457 45591493 -105192060 + AT_rich Low_complexity Low_complexity 1 36 0 1178 229 66 77 chr11 45591669 45592136 -105191417 - LTR40b LTR ERVL 0 462 1 1595 166 26 9 chr11 45593118 45593481 -105190072 - L1PA16 LINE L1 0 6154 5771 3698 121 14 0 chr11 45593524 45594080 -105189473 - L1PA15 LINE L1 -5 6160 5597 419 311 30 8 chr11 45594082 45594214 -105189339 + MIR SINE MIR 20 154 -108 319 256 102 80 chr11 45594566 45594703 -105188850 + MIR3 SINE MIR 12 151 -57 440 308 100 81 chr11 45594886 45595246 -105188307 + MLT1L LTR MaLR 120 486 -129 1809 152 0 14 chr11 45595352 45595649 -105187904 - AluSx SINE Alu -19 293 1 653 299 94 5 chr11 45595659 45595883 -105187670 - MIR SINE MIR -14 248 5 7286 44 1 0 chr11 45595919 45597240 -105186313 + L1PA6 LINE L1 4865 6187 0 522 323 58 21 chr11 45598343 45598671 -105184882 + MLT1L LTR MaLR 40 379 -236 250 277 0 15 chr11 45598883 45598948 -105184605 - MIR SINE MIR -184 78 15 404 311 95 5 chr11 45599597 45599787 -105183766 - MIR SINE MIR -6 256 50 409 227 106 8 chr11 45601426 45601558 -105181995 + MER103 DNA DNA 2 146 -20 318 222 0 16 chr11 45603060 45603123 -105180430 + L2 LINE L2 3209 3270 -2 4590 91 5 11 chr11 45603149 45603796 -105179757 - L1PA8A LINE L1 -13 6118 5476 * 10122 45 0 0 chr11 45603791 45605813 -105177740 - L1PA4 LINE L1 0 6155 4135 259 91 45 0 chr11 45605967 45606011 -105177542 - Alu SINE Alu -255 46 1 530 223 58 0 chr11 45606045 45606166 -105177387 - FLAM_A SINE Alu -5 128 1 2126 144 0 6 chr11 45606436 45606749 -105176804 - AluSx SINE Alu -1 311 1 300 153 83 7 chr11 45606749 45606893 -105176660 + (TA)n Simple_repeat Simple_repeat 1 155 0 187 118 49 49 chr11 45606893 45606995 -105176558 + (TTATA)n Simple_repeat Simple_repeat 5 106 0 182 37 37 0 chr11 45607338 45607365 -105176188 + (TA)n Simple_repeat Simple_repeat 2 29 0 1974 150 0 0 chr11 45607529 45607816 -105175737 + AluJb SINE Alu 1 287 -25 262 176 24 0 chr11 45607834 45607919 -105175634 + (TA)n Simple_repeat Simple_repeat 2 88 0 728 188 18 3 chr11 45607965 45608247 -105175306 - MLT1A1 LTR MaLR 0 365 1 2589 52 0 7 chr11 45609071 45609376 -105174177 - AluY SINE Alu -8 303 1 460 227 162 58 chr11 45609683 45609837 -105173716 - MER5A DNA MER1_type -1 188 19 553 216 224 0 chr11 45609855 45610112 -105173441 + MER33 DNA MER1_type 1 363 0 2024 153 37 3 chr11 45612978 45613332 -105170221 - MER47A DNA MER2_type 0 366 1 2232 98 20 0 chr11 45613614 45613785 -105169768 - AluSp SINE Alu -11 302 121 405 0 0 0 chr11 45613785 45613830 -105169723 + (TG)n Simple_repeat Simple_repeat 2 46 0 2232 98 20 0 chr11 45613830 45613954 -105169599 - AluSp SINE Alu -192 121 1 611 214 113 13 chr11 45614247 45614406 -105169147 - AluJb SINE Alu -15 297 123 209 293 0 17 chr11 45615265 45615323 -105168230 - MIR3 SINE MIR -6 202 146 2211 136 0 3 chr11 45615682 45615991 -105167562 - AluSx SINE Alu -4 308 1 2289 87 16 13 chr11 45616426 45616736 -105166817 - AluSp SINE Alu -2 311 1 907 201 19 0 chr11 45616742 45616901 -105166652 - AluJo/FRAM SINE Alu -16 296 135 1911 173 3 0 chr11 45616902 45617202 -105166351 - AluJo SINE Alu -11 301 1 471 264 58 58 chr11 45617281 45617455 -105166098 - MER5A DNA MER1_type -1 188 15 1133 67 0 0 chr11 45617621 45617755 -105165798 - AluSc SINE Alu -17 292 159 300 27 0 0 chr11 45618516 45618553 -105165000 + (TG)n Simple_repeat Simple_repeat 2 38 0 312 228 269 29 chr11 45618553 45618724 -105164829 + L2 LINE L2 1760 1971 -1343 2040 278 95 54 chr11 45618869 45619843 -105163710 + L2 LINE L2 2014 3036 -277 2261 107 7 0 chr11 45620420 45620719 -105162834 - AluSx SINE Alu -11 301 1 288 0 0 0 chr11 45621599 45621631 -105161922 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1049 190 63 86 chr11 45621642 45621910 -105161643 - AluJo SINE Alu -44 268 7 3297 176 129 10 chr11 45621993 45622681 -105160872 - MER21B LTR ERV1 -93 770 1 906 186 12 18 chr11 45622731 45622898 -105160655 + FRAM SINE Alu 1 166 0 1091 142 12 0 chr11 45623114 45623276 -105160277 - AluSq SINE Alu -19 294 131 2012 110 44 0 chr11 45623279 45623594 -105159959 - AluSq SINE Alu 0 327 1 388 321 58 42 chr11 45623755 45623995 -105159558 + L1ME4a LINE L1 5878 6121 0 2469 74 0 0 chr11 45624128 45624426 -105159127 - AluY SINE Alu -13 298 1 444 357 16 0 chr11 45624598 45624727 -105158826 - MIR3 SINE MIR -3 205 75 2411 131 48 10 chr11 45624973 45625726 -105157827 + L1P4 LINE L1 4887 5663 -503 28 61 0 0 chr11 45626260 45626309 -105157244 + AT_rich Low_complexity Low_complexity 1 49 0 624 142 217 0 chr11 45626851 45626971 -105156582 - MER46A DNA MER2_type -90 146 1 200 31 62 0 chr11 45627626 45627658 -105155895 + T-rich Low_complexity Low_complexity 2 35 0 2091 128 3 0 chr11 45627661 45627949 -105155604 - AluSx SINE Alu -23 289 1 356 301 59 21 chr11 45628221 45628460 -105155093 - L1ME LINE L1 -377 5744 5497 207 0 0 0 chr11 45629205 45629228 -105154325 + (TG)n Simple_repeat Simple_repeat 2 24 0 408 275 121 13 chr11 45629824 45629973 -105153580 - MIR3 SINE MIR -6 202 38 2070 113 3 0 chr11 45629993 45630301 -105153252 - AluSq SINE Alu 0 309 1 979 274 60 7 chr11 45631527 45631826 -105151727 - L2 LINE L2 -814 2500 2186 287 267 22 0 chr11 45631889 45631979 -105151574 + HAL1 LINE L1 1560 1651 -856 582 165 43 0 chr11 45632367 45632482 -105151071 + Charlie4 DNA MER1_type 1826 1945 -16 906 176 35 130 chr11 45632490 45632636 -105150917 + L1MC5 LINE L1 7330 7488 -473 1966 156 10 0 chr11 45632636 45632943 -105150610 - AluJb SINE Alu -2 310 1 906 176 35 130 chr11 45632943 45633089 -105150464 + L1MC5 LINE L1 7488 7565 -396 2091 92 0 58 chr11 45633089 45633416 -105150137 - AluSx SINE Alu -4 308 1 906 176 35 130 chr11 45633416 45633583 -105149970 + L1MC5 LINE L1 7565 7746 -215 1639 152 87 7 chr11 45633632 45633908 -105149645 + AluJo SINE Alu 1 298 -14 340 259 0 65 chr11 45633923 45634027 -105149526 + L1ME2 LINE L1 2245 2339 -3807 354 261 87 72 chr11 45634027 45634120 -105149433 - MER46C DNA MER2_type 0 338 248 1673 170 6 26 chr11 45634120 45634432 -105149121 + AluJb SINE Alu 1 306 -6 354 261 87 72 chr11 45634432 45634671 -105148882 - MER46C DNA MER2_type -90 248 1 340 259 0 65 chr11 45634671 45634705 -105148848 + L1ME2 LINE L1 2339 2374 -3772 21 0 0 0 chr11 45634959 45634980 -105148573 + AT_rich Low_complexity Low_complexity 1 21 0 41097 31 24 1 chr11 45635033 45641049 -105142504 - L1PA2 LINE L1 0 6155 1 363 274 22 74 chr11 45641197 45641332 -105142221 + L2 LINE L2 3162 3289 -24 548 291 173 25 chr11 45641347 45641670 -105141883 - L2 LINE L2 -44 3269 2899 2255 95 10 3 chr11 45642326 45642621 -105140932 + AluSc SINE Alu 1 297 -12 586 260 159 29 chr11 45642668 45643035 -105140518 + MLT1H1 LTR MaLR 59 448 -107 1429 248 75 10 chr11 45643759 45644158 -105139395 + MER70B LTR ERVL 6 430 -148 235 225 93 78 chr11 45644453 45644512 -105139041 + MLT1E1 LTR MaLR 1 58 -596 354 108 108 0 chr11 45644512 45644586 -105138967 + L1MA9 LINE L1 6230 6311 -1 235 225 93 78 chr11 45644586 45644655 -105138898 + MLT1E1 LTR MaLR 58 131 -523 * 1725 163 29 70 chr11 45644652 45645095 -105138458 + MSTB1 LTR MaLR 8 432 0 1242 207 122 70 chr11 45645095 45645592 -105137961 + MLT1E1 LTR MaLR 132 654 0 307 250 111 17 chr11 45645778 45645939 -105137614 + MIR SINE MIR 32 254 -8 2222 92 0 3 chr11 45646119 45646411 -105137142 - AluSg1 SINE Alu -18 291 1 225 284 125 46 chr11 45646884 45647212 -105136341 + L1ME2 LINE L1 2678 3031 -3115 725 218 0 0 chr11 45647217 45647350 -105136203 + FLAM_A SINE Alu 5 137 -5 385 296 92 54 chr11 45647351 45647743 -105135810 + L1ME2 LINE L1 3078 3484 -2662 1364 139 243 4 chr11 45647865 45648145 -105135408 - MER7A DNA MER2_type -1 345 1 374 282 94 0 chr11 45648165 45648335 -105135218 + L1ME2 LINE L1 5068 5253 -893 210 91 0 0 chr11 45648387 45648420 -105135133 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1284 209 37 18 chr11 45648423 45648696 -105134857 - AluJo SINE Alu -29 283 6 446 215 0 0 chr11 45648963 45649042 -105134511 - MLT1I LTR MaLR -238 171 93 672 252 75 53 chr11 45649129 45649395 -105134158 - MLT1I LTR MaLR -39 370 99 311 302 123 36 chr11 45649503 45649967 -105133586 + L1ME2 LINE L1 5434 5948 -216 22 35 0 0 chr11 45650036 45650065 -105133488 + AT_rich Low_complexity Low_complexity 1 29 0 1802 152 14 20 chr11 45650174 45650309 -105133244 + AluJo SINE Alu 1 135 -177 1911 154 7 7 chr11 45650309 45650607 -105132946 + AluJb SINE Alu 1 298 -14 1802 152 14 20 chr11 45650607 45650768 -105132785 + AluJo SINE Alu 135 295 -17 25 0 0 0 chr11 45651590 45651615 -105131938 + AT_rich Low_complexity Low_complexity 1 25 0 1677 149 7 65 chr11 45651641 45651949 -105131604 + AluJo SINE Alu 1 290 -22 2485 73 0 6 chr11 45651949 45652262 -105131291 + AluY SINE Alu 1 311 0 318 250 173 73 chr11 45652262 45652572 -105130981 + L1ME LINE L1 5287 5625 -539 1872 171 3 3 chr11 45652733 45653032 -105130521 + AluJo SINE Alu 1 299 -13 299 318 201 0 chr11 45654424 45654603 -105128950 - L2 LINE L2 -171 3142 2928 229 132 0 0 chr11 45654625 45654663 -105128890 - MLT1A2 LTR MaLR 0 390 353 2776 223 73 19 chr11 45654680 45655432 -105128121 - MER21B LTR ERV1 -54 809 17 817 174 135 111 chr11 45655439 45655773 -105127780 - MLT1A2 LTR MaLR -32 342 1 1673 291 183 6 chr11 45655793 45656576 -105126977 - L2 LINE L2 -424 2890 1970 2539 53 0 0 chr11 45656716 45657016 -105126537 - AluY SINE Alu -11 300 1 233 246 16 0 chr11 45657616 45657677 -105125876 - L1ME LINE L1 -513 5608 5547 468 35 0 0 chr11 45659518 45659576 -105123977 + (TG)n Simple_repeat Simple_repeat 2 59 0 1287 163 26 91 chr11 45661000 45661307 -105122246 + AluJo SINE Alu 2 288 -24 509 245 161 32 chr11 45661946 45662101 -105121452 - MER5A DNA MER1_type -6 183 9 285 326 0 12 chr11 45662794 45662880 -105120673 - MIR3 SINE MIR -6 202 118 1943 141 7 3 chr11 45663313 45663648 -105119905 + AluJb SINE Alu 1 336 0 222 225 0 0 chr11 45664039 45664079 -105119474 + (CATA)n Simple_repeat Simple_repeat 3 42 0 1028 164 20 0 chr11 45664196 45664391 -105119162 + MER46A DNA MER2_type 38 236 0 224 339 153 25 chr11 45665864 45665982 -105117571 - L2 LINE L2 -4 3268 3136 326 176 185 56 chr11 45666093 45666201 -105117352 - L2 LINE L2 -20 3293 3172 222 369 0 36 chr11 45666271 45666355 -105117198 + L2 LINE L2 3168 3248 -24 23 0 0 0 chr11 45666355 45666378 -105117175 + AT_rich Low_complexity Low_complexity 1 23 0 437 271 182 82 chr11 45666559 45666976 -105116577 - MLT1L LTR MaLR -13 602 144 186 127 99 0 chr11 45667943 45668014 -105115539 + (TTATA)n Simple_repeat Simple_repeat 5 82 0 2354 81 0 0 chr11 45669419 45669714 -105113839 + AluSg SINE Alu 1 295 -15 21 36 0 0 chr11 45669716 45669744 -105113809 + AT_rich Low_complexity Low_complexity 1 28 0 2001 134 3 7 chr11 45670400 45670705 -105112848 + AluSx SINE Alu 2 305 -7 237 33 0 0 chr11 45671973 45672003 -105111550 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 180 111 0 0 chr11 45672155 45672182 -105111371 + (CATA)n Simple_repeat Simple_repeat 1 27 0 298 258 0 0 chr11 45672789 45672851 -105110702 + MIR SINE MIR 100 161 -101 547 108 48 0 chr11 45673221 45673304 -105110249 - AluJo/FRAM SINE Alu -19 293 207 828 192 7 0 chr11 45673304 45673450 -105110103 - AluJo SINE Alu -70 242 96 198 310 17 0 chr11 45673680 45673738 -105109815 + MIR SINE MIR 183 241 -21 1977 138 7 0 chr11 45674284 45674567 -105108986 - AluSx SINE Alu -27 285 1 231 0 77 0 chr11 45674577 45674616 -105108937 + T-rich Low_complexity Low_complexity 2 43 0 2213 96 4 0 chr11 45674619 45674900 -105108653 - AluSx SINE Alu -30 282 1 1318 198 67 18 chr11 45676021 45676304 -105107249 - AluJo SINE Alu -15 297 1 2284 117 0 0 chr11 45676627 45676935 -105106618 - AluSg SINE Alu -2 308 1 1859 161 43 0 chr11 45677053 45677352 -105106201 + AluJb SINE Alu 1 312 0 581 202 119 67 chr11 45679645 45679838 -105103715 - MER106B DNA MER1_type -5 1054 29 1152 128 84 75 chr11 45680317 45680544 -105103009 - MER46A DNA MER2_type -7 229 1 1804 171 0 0 chr11 45680612 45680899 -105102654 - AluJb SINE Alu -15 297 11 650 150 24 47 chr11 45681062 45681189 -105102364 + FLAM_C SINE Alu 4 127 -6 1933 141 0 3 chr11 45681257 45681570 -105101983 - AluSx SINE Alu 0 312 1 8201 111 35 11 chr11 45681658 45682927 -105100626 + HSMAR2 DNA Mariner 3 1302 0 244 302 12 35 chr11 45683658 45683744 -105099809 + L2 LINE L2 3188 3271 -1 472 258 80 12 chr11 45684114 45684277 -105099276 + MIR3 SINE MIR 32 205 -3 448 302 44 13 chr11 45684916 45685075 -105098478 + MIR SINE MIR 3 166 -96 1491 192 27 20 chr11 45685651 45685943 -105097610 + AluJo SINE Alu 1 294 -18 22 0 0 0 chr11 45685952 45685974 -105097579 + AT_rich Low_complexity Low_complexity 1 22 0 655 223 69 45 chr11 45686009 45686211 -105097342 + MIR SINE MIR 56 262 0 339 158 263 0 chr11 45687776 45687852 -105095701 - Tigger2 DNA MER2_type -11 2707 2612 588 91 0 45 chr11 45687852 45687940 -105095613 + HY4 scRNA scRNA 1 84 -9 1433 97 209 29 chr11 45687965 45688315 -105095238 - Tigger2 DNA MER2_type -90 2628 1 2739 196 48 94 chr11 45688781 45689529 -105094024 - MER21B LTR ERV1 -52 811 98 305 200 33 100 chr11 45689631 45689721 -105093832 - MER21B LTR ERV1 -758 105 22 747 167 53 0 chr11 45689737 45689885 -105093668 + MER2 DNA MER2_type 8 163 -182 488 205 28 107 chr11 45689885 45690100 -105093453 - LTR24B LTR ERV1 0 635 414 363 190 25 13 chr11 45690417 45690496 -105093057 - LTR24B LTR ERV1 -488 88 9 394 237 0 0 chr11 45690586 45690662 -105092891 + MER2 DNA MER2_type 270 345 0 2347 87 0 3 chr11 45693318 45693630 -105089923 + AluY SINE Alu 1 311 0 1691 159 7 17 chr11 45693637 45693933 -105089620 + AluJo SINE Alu 4 296 -16 189 0 0 0 chr11 45695243 45695264 -105088289 + (A)n Simple_repeat Simple_repeat 1 21 0 6042 154 41 17 chr11 45696520 45697811 -105085742 + L1MA5A LINE L1 4124 5441 -746 2218 144 87 2 chr11 45697972 45698409 -105085144 + L1MA5A LINE L1 5814 6287 -10 1367 199 62 0 chr11 45698439 45698711 -105084842 + AluJo SINE Alu 1 289 -23 212 246 14 0 chr11 45699719 45699788 -105083765 + (TA)n Simple_repeat Simple_repeat 2 71 0 247 226 202 24 chr11 45701148 45701232 -105082321 - L2 LINE L2 -16 3256 3158 2580 59 0 0 chr11 45701235 45701540 -105082013 - AluY SINE Alu -6 305 1 311 116 0 198 chr11 45701851 45701884 -105081669 + L2 LINE L2 2173 2180 -1134 2377 90 0 3 chr11 45701884 45702195 -105081358 - AluSq SINE Alu -3 310 1 311 116 0 198 chr11 45702195 45702247 -105081306 + L2 LINE L2 2180 2241 -1073 461 296 253 24 chr11 45702253 45702550 -105081003 + L2 LINE L2 2593 2957 -357 265 301 44 62 chr11 45703205 45703318 -105080235 - L2 LINE L2 -8 3264 3154 318 202 0 45 chr11 45704667 45704756 -105078797 + HsTC2 DNA Tc2 3 87 -1811 218 284 95 0 chr11 45705026 45705100 -105078453 - L2 LINE L2 -11 3302 3222 1937 152 0 3 chr11 45705334 45705631 -105077922 - AluJb SINE Alu -16 296 1 247 263 100 0 chr11 45705804 45705884 -105077669 - L1ME LINE L1 -365 5797 5710 310 290 30 19 chr11 45705900 45706034 -105077519 - L1ME LINE L1 -465 5656 5524 693 231 115 45 chr11 45706074 45706317 -105077236 - MIR SINE MIR 0 262 3 1971 152 0 34 chr11 45706418 45706741 -105076812 - AluSx SINE Alu 0 312 1 826 222 30 0 chr11 45707032 45707230 -105076323 - L1ME LINE L1 -1082 5064 4861 2377 293 62 10 chr11 45707230 45708221 -105075332 + L2 LINE L2 2266 3312 -1 29 28 0 0 chr11 45708591 45708627 -105074926 + AT_rich Low_complexity Low_complexity 1 36 0 1422 172 116 15 chr11 45708798 45709066 -105074487 + AluJo SINE Alu 9 303 -9 2355 235 90 43 chr11 45709077 45709156 -105074397 + L1ME3 LINE L1 4415 4489 -1673 1279 192 8 0 chr11 45709156 45709390 -105074163 + MER46A DNA MER2_type 1 236 0 2355 235 90 43 chr11 45709390 45709571 -105073982 + L1ME3 LINE L1 4489 4660 -1502 423 0 0 0 chr11 45709571 45709618 -105073935 + (CA)n Simple_repeat Simple_repeat 2 48 0 2355 235 90 43 chr11 45709618 45710957 -105072596 + L1ME3 LINE L1 4660 6093 -69 953 163 65 11 chr11 45711400 45711584 -105071969 - MER105 DNA DNA -9 195 2 180 250 62 47 chr11 45711719 45711783 -105071770 - L3 LINE CR1 -178 1399 1335 29 0 0 0 chr11 45712572 45712601 -105070952 + AT_rich Low_complexity Low_complexity 1 29 0 2167 95 0 54 chr11 45714143 45714458 -105069095 + AluSx SINE Alu 1 298 -14 982 189 6 0 chr11 45716280 45716444 -105067109 - FAM SINE Alu -10 165 1 232 350 29 39 chr11 45716751 45716854 -105066699 - MIR3 SINE MIR -104 104 3 182 37 37 0 chr11 45717560 45717587 -105065966 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 539 260 319 32 chr11 45717599 45718024 -105065529 - L2 LINE L2 -32 3281 2758 3169 127 21 8 chr11 45718034 45718507 -105065046 + MER1A DNA MER1_type 51 529 0 3637 275 123 19 chr11 45718510 45719840 -105063713 - L2 LINE L2 -568 2746 1278 204 292 46 69 chr11 45719840 45719970 -105063583 - L2 LINE L2 -863 2451 2325 21 0 0 0 chr11 45720184 45720205 -105063348 + AT_rich Low_complexity Low_complexity 1 21 0 2091 120 0 19 chr11 45720669 45720985 -105062568 - AluSx SINE Alu -2 310 1 2124 111 14 3 chr11 45721078 45721367 -105062186 + AluSx SINE Alu 1 292 -20 638 242 6 25 chr11 45721763 45721924 -105061629 + FRAM SINE Alu 1 156 -20 21 0 0 0 chr11 45724888 45724909 -105058644 + AT_rich Low_complexity Low_complexity 1 21 0 320 321 15 30 chr11 45725783 45725917 -105057636 - MIR SINE MIR -82 180 49 1926 155 7 0 chr11 45726737 45727034 -105056519 + AluJb SINE Alu 1 299 -13 399 41 0 0 chr11 45727292 45727341 -105056212 + (CA)n Simple_repeat Simple_repeat 2 50 0 5499 47 20 3 chr11 45727376 45728074 -105055479 - L1PA7 LINE L1 0 6154 5445 320 222 167 0 chr11 45728227 45728317 -105055236 - MIR SINE MIR -25 237 133 569 152 0 10 chr11 45728336 45728435 -105055118 + FLAM_A SINE Alu 39 136 -6 256 235 0 0 chr11 45728435 45728486 -105055067 - MIR SINE MIR -118 144 94 2299 86 0 16 chr11 45729560 45729891 -105053662 - AluSc SINE Alu 0 309 1 576 0 0 0 chr11 45730761 45730825 -105052728 + (CA)n Simple_repeat Simple_repeat 2 65 0 461 284 149 0 chr11 45731037 45731185 -105052368 + MIR SINE MIR 47 216 -46 495 0 0 0 chr11 45731670 45731725 -105051828 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 258 312 0 13 chr11 45731765 45731842 -105051711 - 7SK RNA RNA -1 192 117 329 220 30 40 chr11 45731886 45731986 -105051567 - 7SK RNA RNA -85 108 10 437 342 169 25 chr11 45733321 45734002 -105049551 + L2 LINE L2 1876 2654 -660 351 309 59 20 chr11 45734135 45734287 -105049266 + MIR SINE MIR 95 252 -10 1782 128 62 4 chr11 45734764 45735037 -105048516 - AluSx SINE Alu -23 289 1 287 305 43 75 chr11 45735577 45735764 -105047789 - L3 LINE CR1 -251 1326 1146 339 321 57 21 chr11 45735848 45735988 -105047565 - L3 LINE CR1 -373 1204 1060 2268 90 0 10 chr11 45736052 45736363 -105047190 - AluSx SINE Alu -4 308 1 1887 136 7 23 chr11 45737580 45737882 -105045671 + AluSx SINE Alu 1 297 -15 2063 156 0 28 chr11 45738516 45738868 -105044685 - MER7A DNA MER2_type -5 341 2 314 250 123 17 chr11 45741218 45741312 -105042241 + L1ME4a LINE L1 5257 5340 -877 348 24 0 0 chr11 45741312 45741353 -105042200 + (CA)n Simple_repeat Simple_repeat 2 42 0 314 250 123 17 chr11 45741353 45741475 -105042078 + L1ME4a LINE L1 5340 5497 -720 444 271 136 5 chr11 45741494 45741708 -105041845 + L1ME4a LINE L1 5571 5812 -309 581 196 89 18 chr11 45741783 45741951 -105041602 + MER104 DNA MER2_type 1 180 0 623 217 25 19 chr11 45741965 45742122 -105041431 + L1ME4a LINE L1 5960 6117 -4 1104 327 96 36 chr11 45742176 45742644 -105040909 + L3 LINE CR1 10 505 -1072 699 313 48 56 chr11 45742647 45743111 -105040442 + L2 LINE L2 2751 3267 -5 536 269 110 0 chr11 45743486 45743631 -105039922 + MIR SINE MIR 6 166 -96 731 253 0 17 chr11 45743632 45743806 -105039747 + FRAM SINE Alu 1 171 -5 188 257 14 43 chr11 45743854 45743924 -105039629 + MIR SINE MIR 188 255 -7 1010 174 53 8 chr11 45744012 45744218 -105039335 + MER20 DNA MER1_type 7 219 0 872 327 107 46 chr11 45745107 45746005 -105037548 + L2 LINE L2 2048 3061 -252 209 301 146 39 chr11 45746111 45746214 -105037339 + L2 LINE L2 3193 3306 -7 282 211 187 56 chr11 45747207 45747458 -105036095 + L1ME4a LINE L1 5725 6008 -113 21 0 0 0 chr11 45748369 45748390 -105035163 + AT_rich Low_complexity Low_complexity 1 21 0 2131 92 7 11 chr11 45748811 45749094 -105034459 + AluSx SINE Alu 1 282 -30 323 44 22 0 chr11 45749094 45749139 -105034414 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 1838 145 50 0 chr11 45749248 45749531 -105034022 + AluJo SINE Alu 1 297 -15 409 304 55 27 chr11 45750001 45750221 -105033332 + HAL1b LINE L1 415 640 -708 1698 144 23 7 chr11 45750332 45750653 -105032900 - MER47B DNA MER2_type -2 416 27 680 290 191 33 chr11 45751112 45751675 -105031878 + L1M4 LINE L1 2173 2646 -3500 218 31 0 31 chr11 45751675 45751707 -105031846 + (TAA)n Simple_repeat Simple_repeat 2 32 0 680 290 191 33 chr11 45751707 45752223 -105031330 + L1M4 LINE L1 2646 3419 -2727 228 318 118 22 chr11 45752337 45752692 -105030861 + L1M4 LINE L1 3514 3902 -2244 306 0 0 0 chr11 45752773 45752807 -105030746 + (CA)n Simple_repeat Simple_repeat 2 35 0 356 299 221 0 chr11 45752844 45753061 -105030492 + L1M4 LINE L1 4051 4315 -1831 635 281 85 49 chr11 45754019 45754595 -105028958 + L1MEc LINE L1 810 1406 -4990 480 229 117 127 chr11 45754637 45755179 -105028374 - MLT1H LTR MaLR 0 549 4 1817 123 34 87 chr11 45755296 45755654 -105027899 + MER44D DNA MER2_type 1 609 0 2038 156 37 0 chr11 45756267 45756620 -105026933 + MER47A DNA MER2_type 1 366 0 1034 278 92 28 chr11 45757160 45757595 -105025958 - MLT1H LTR MaLR -4 545 83 2448 25 7 0 chr11 45757696 45757982 -105025571 + AluYb8 SINE Alu 1 288 -30 678 298 63 0 chr11 45757996 45758248 -105025305 + L1MEc LINE L1 1525 1792 -4604 320 280 122 35 chr11 45758327 45758638 -105024915 + L1MEc LINE L1 1918 2255 -4141 677 259 70 57 chr11 45758689 45758793 -105024760 + L1MEc LINE L1 2384 2485 -3730 1652 203 100 44 chr11 45758793 45759271 -105024282 + MLT1D LTR MaLR 1 505 0 677 259 70 57 chr11 45759271 45759510 -105024043 + L1MEc LINE L1 2485 2737 -3478 2228 102 3 3 chr11 45759510 45759805 -105023748 - AluSg SINE Alu -15 295 1 677 259 70 57 chr11 45759805 45759915 -105023638 + L1MEc LINE L1 2737 2844 -3371 202 127 0 111 chr11 45759967 45760030 -105023523 + (TAAAAA)n Simple_repeat Simple_repeat 3 58 0 760 304 107 49 chr11 45760117 45760589 -105022964 + L1M4 LINE L1 4457 4999 -1147 2214 104 0 13 chr11 45760589 45760887 -105022666 + AluSx SINE Alu 5 298 -14 760 304 107 49 chr11 45760887 45761237 -105022316 + L1M4 LINE L1 4999 5327 -819 347 254 72 39 chr11 45761847 45762199 -105021354 + L1ME LINE L1 863 1201 -5171 2562 195 29 6 chr11 45762200 45762944 -105020609 + L1MB2 LINE L1 4812 5570 -601 3261 154 42 2 chr11 45763672 45764261 -105019292 + L1MB2 LINE L1 5551 6163 -8 575 235 118 56 chr11 45764375 45764861 -105018692 + L1ME LINE L1 1218 1652 -4732 * 2700 229 87 24 chr11 45764856 45765244 -105018309 + L1ME2 LINE L1 4752 5114 -1050 1458 178 40 0 chr11 45765244 45765491 -105018062 + AluJo SINE Alu 1 257 -55 2700 229 87 24 chr11 45765491 45766428 -105017125 + L1ME2 LINE L1 5114 6164 0 384 296 45 11 chr11 45766419 45766598 -105016955 + L1ME LINE L1 1790 1974 -4589 * 832 226 11 28 chr11 45767276 45767457 -105016096 - MER5A DNA MER1_type -11 178 1 237 207 35 17 chr11 45768335 45768393 -105015160 + L1ME LINE L1 2195 2253 -4310 1964 235 73 65 chr11 45768440 45768666 -105014887 + L1ME LINE L1 2333 2556 -3826 1444 167 78 29 chr11 45768666 45768947 -105014606 + AluJo SINE Alu 1 295 -17 1964 235 73 65 chr11 45768947 45769486 -105014067 + L1ME LINE L1 2556 3070 -3312 2268 113 0 0 chr11 45769486 45769787 -105013766 + AluSx SINE Alu 3 303 -9 1964 235 73 65 chr11 45769787 45770063 -105013490 + L1ME LINE L1 3070 3342 -3040 1134 254 51 57 chr11 45770043 45770184 -105013369 + L1P3 LINE L1 5409 5549 -623 * 2119 132 3 28 chr11 45770184 45770503 -105013050 + AluSx SINE Alu 1 311 -1 1134 254 51 57 chr11 45770503 45770748 -105012805 + L1P3 LINE L1 5549 5796 -376 254 271 93 53 chr11 45770773 45770924 -105012629 + L1MC5 LINE L1 5784 5940 -1868 2794 104 35 146 chr11 45771233 45771721 -105011832 - Tigger2 DNA MER2_type 0 2718 1 404 174 0 87 chr11 45771777 45771875 -105011678 - Tigger4(Zombi) DNA MER2_type 0 2731 248 705 48 0 0 chr11 45771875 45771959 -105011594 + THE1-int LTR MaLR 358 441 -1139 1434 171 43 16 chr11 45771959 45772216 -105011337 - AluJb SINE Alu -48 264 1 933 157 87 0 chr11 45772219 45772391 -105011162 - MER46A DNA MER2_type -49 187 1 511 243 59 136 chr11 45772432 45772953 -105010600 + L1MC5 LINE L1 6415 6938 -870 541 108 0 0 chr11 45773019 45773093 -105010460 - THE1A LTR MaLR 0 355 282 7076 83 0 0 chr11 45773093 45773987 -105009566 - THE1A-int LTR MaLR -686 894 1 2902 75 20 0 chr11 45773987 45774335 -105009218 - THE1A LTR MaLR 0 355 1 1955 226 86 50 chr11 45774365 45775219 -105008334 + L1MC5 LINE L1 7025 7908 -53 1498 156 10 80 chr11 45775219 45775520 -105008033 - AluJo SINE Alu -32 280 1 2311 97 0 3 chr11 45775550 45775849 -105007704 + AluSg SINE Alu 1 298 -12 226 287 41 16 chr11 45776095 45776217 -105007336 + L1ME3A LINE L1 1333 1457 -4939 495 264 174 16 chr11 45776226 45776484 -105007069 - LTR50 LTR ERVL -4 791 493 680 200 186 9 chr11 45776539 45776754 -105006799 - LTR50 LTR ERVL -542 253 1 255 61 0 0 chr11 45776764 45776797 -105006756 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 320 289 10 10 chr11 45776798 45776895 -105006658 - L2 LINE L2 -14 3299 3203 385 297 22 31 chr11 45777599 45777821 -105005732 + L1ME3A LINE L1 2341 2560 -3655 3796 229 54 51 chr11 45777910 45778421 -105005132 - L1M4 LINE L1 -2417 3729 3221 1964 121 26 0 chr11 45778421 45778694 -105004859 - AluSx SINE Alu -32 280 1 3796 229 54 51 chr11 45778694 45779454 -105004099 - L1M4 LINE L1 -2925 3221 2454 2051 270 103 51 chr11 45779446 45780451 -105003102 + L1ME3A LINE L1 3206 4329 -1886 * 2213 126 0 0 chr11 45780451 45780752 -105002801 + AluSx SINE Alu 1 301 -11 2051 270 103 51 chr11 45780752 45781360 -105002193 + L1ME3A LINE L1 4329 4904 -1311 2383 77 143 15 chr11 45781365 45781809 -105001744 + MER1A DNA MER1_type 1 529 0 630 291 112 46 chr11 45781918 45782550 -105001003 + L1ME3A LINE L1 5034 5721 -514 486 194 120 43 chr11 45782564 45782742 -105000811 + L1ME3A LINE L1 5796 5956 -283 977 197 33 11 chr11 45782745 45782928 -105000625 + Tigger7 DNA MER2_type 4 190 -543 512 216 10 0 chr11 45782961 45783058 -105000495 + Tigger7 DNA MER2_type 2389 2486 -1 206 207 11 35 chr11 45783295 45783350 -105000203 + (TTTA)n Simple_repeat Simple_repeat 4 58 -30 1887 141 3 43 chr11 45783350 45783654 -104999899 + AluJo SINE Alu 6 297 -15 206 207 11 35 chr11 45783654 45783685 -104999868 + (TTTA)n Simple_repeat Simple_repeat 58 88 0 1990 138 0 0 chr11 45783727 45784037 -104999516 - AluSx SINE Alu 0 310 1 1030 285 76 29 chr11 45784053 45784272 -104999281 + HAL1b LINE L1 351 558 -790 2124 142 43 56 chr11 45784272 45784667 -104998886 - MLT1B LTR MaLR 0 390 1 1030 285 76 29 chr11 45784667 45784893 -104998660 + HAL1b LINE L1 558 817 -531 26 50 0 0 chr11 45785052 45785092 -104998461 + AT_rich Low_complexity Low_complexity 1 40 0 847 298 71 29 chr11 45785095 45785283 -104998270 + L1MC/D LINE L1 4873 5052 -1268 1620 139 80 31 chr11 45785283 45785570 -104997983 - AluJo SINE Alu -11 301 1 847 298 71 29 chr11 45785570 45786051 -104997502 + L1MC/D LINE L1 5052 5568 -752 2227 114 7 0 chr11 45786051 45786349 -104997204 + AluSx SINE Alu 5 304 -8 314 186 72 31 chr11 45786434 45786531 -104997022 + L1MC4a LINE L1 6075 6175 -1633 658 237 26 42 chr11 45786552 45786742 -104996811 + MIR SINE MIR 64 250 -12 252 0 0 0 chr11 45787446 45787474 -104996079 + (A)n Simple_repeat Simple_repeat 1 28 0 325 298 26 19 chr11 45787650 45787771 -104995782 + MIR SINE MIR 4 135 -73 872 272 28 0 chr11 45787989 45788202 -104995351 - MER58A DNA MER1_type -2 222 4 249 275 101 0 chr11 45788246 45788315 -104995238 + MER5C DNA MER1_type 1 76 -248 454 319 70 13 chr11 45789162 45789319 -104994234 + L2 LINE L2 3107 3272 0 272 217 54 43 chr11 45789975 45790067 -104993486 + MIR SINE MIR 170 262 0 2325 96 0 3 chr11 45792257 45792550 -104991003 - AluSq SINE Alu -21 292 1 410 157 248 33 chr11 45792566 45792687 -104990866 - L1ME1 LINE L1 -15 6151 6005 362 176 33 44 chr11 45792830 45793012 -104990541 + CT-rich Low_complexity Low_complexity 1 180 0 4736 199 102 4 chr11 45796172 45797118 -104986435 - MER45B DNA AcHobo 0 1040 3 183 385 25 0 chr11 45797357 45797479 -104986074 + MIR SINE MIR 14 138 -124 256 260 0 0 chr11 45798155 45798205 -104985348 + L2 LINE L2 3213 3262 -10 353 325 61 65 chr11 45798230 45798461 -104985092 + MIR SINE MIR 2 231 -31 21 0 0 0 chr11 45798494 45798515 -104985038 + AT_rich Low_complexity Low_complexity 1 21 0 670 294 56 24 chr11 45798591 45798843 -104984710 + MIR SINE MIR 3 262 0 230 406 28 0 chr11 45799472 45799578 -104983975 - L2 LINE L2 -30 3242 3134 1799 137 27 38 chr11 45799817 45800109 -104983444 + AluJo SINE Alu 1 289 -23 643 151 0 0 chr11 45800194 45800287 -104983266 - AluJ SINE Alu -7 305 213 802 162 134 0 chr11 45800289 45800431 -104983122 - AluJ SINE Alu -151 161 1 2289 119 0 0 chr11 45801161 45801471 -104982082 - AluSx SINE Alu -1 311 2 595 307 9 33 chr11 45802312 45802527 -104981026 + MIR SINE MIR 53 262 0 2359 85 0 0 chr11 45802807 45803100 -104980453 - AluSg SINE Alu -17 293 1 21 0 0 0 chr11 45803108 45803129 -104980424 + AT_rich Low_complexity Low_complexity 1 21 0 328 267 199 15 chr11 45804039 45804170 -104979383 - MIR SINE MIR -33 229 75 1973 142 0 26 chr11 45804343 45804675 -104978878 - AluSx SINE Alu 0 312 1 269 324 15 52 chr11 45808757 45808893 -104974660 + MIR SINE MIR 24 154 -108 186 156 0 0 chr11 45808919 45808951 -104974602 - MIR SINE MIR -85 177 146 * 267 299 56 19 chr11 45808946 45809053 -104974500 + MIR SINE MIR 146 256 -6 1715 93 13 0 chr11 45809866 45810092 -104973461 - AluSc SINE Alu -12 297 69 401 242 52 81 chr11 45810667 45810875 -104972678 + MIR SINE MIR 23 222 -40 987 242 28 12 chr11 45811203 45811455 -104972098 - MIR SINE MIR -3 259 4 599 257 59 35 chr11 45811455 45811650 -104971903 - MIR SINE MIR -61 201 2 190 250 16 62 chr11 45812334 45812398 -104971155 - L2 LINE L2 -76 3196 3136 342 260 76 52 chr11 45812601 45812803 -104970750 - L2 LINE L2 0 3272 2746 242 281 0 0 chr11 45813379 45813443 -104970110 + MIR SINE MIR 199 262 0 1495 204 23 23 chr11 45813528 45813836 -104969717 + AluJo SINE Alu 1 308 -4 415 235 80 86 chr11 45813973 45814297 -104969256 - L1M3de LINE L1 -4704 1346 739 243 135 135 39 chr11 45814329 45814381 -104969172 + MADE1 DNA Mariner 24 80 0 671 257 145 20 chr11 45814389 45814638 -104968915 + L2 LINE L2 2170 2449 -865 2117 123 7 17 chr11 45814648 45814950 -104968603 + AluSx SINE Alu 1 299 -13 1079 264 159 17 chr11 45814953 45815496 -104968057 + L2 LINE L2 2678 3313 0 1956 98 66 21 chr11 45815669 45815838 -104967715 - AluSx SINE Alu -12 300 111 192 77 0 0 chr11 45815838 45815864 -104967689 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1956 98 66 21 chr11 45815864 45815981 -104967572 - AluSx SINE Alu -201 111 1 2382 163 50 89 chr11 45816690 45816936 -104966617 - MLT2B1 LTR ERVL 0 520 266 2183 119 0 10 chr11 45816936 45817246 -104966307 + AluSg SINE Alu 1 307 -3 2382 163 50 89 chr11 45817246 45817538 -104966015 - MLT2B1 LTR ERVL -254 266 3 865 181 48 71 chr11 45818007 45818217 -104965336 - MER3 DNA MER1_type 0 209 5 215 323 0 0 chr11 45818339 45818401 -104965152 + L2 LINE L2 2915 2976 -296 865 261 153 54 chr11 45818506 45818615 -104964938 + LTR16C LTR ERVL 104 201 -290 2963 117 19 0 chr11 45818615 45819041 -104964512 - MER57B LTR ERV1 0 434 1 865 261 153 54 chr11 45819041 45819284 -104964269 + LTR16C LTR ERVL 201 491 0 2107 94 10 0 chr11 45819350 45819638 -104963915 + AluSg SINE Alu 1 291 -19 2066 118 3 19 chr11 45819803 45820118 -104963435 + AluSx SINE Alu 1 310 -2 567 362 32 34 chr11 45820209 45820646 -104962907 - L2 LINE L2 -556 2758 2323 795 143 93 0 chr11 45820650 45820790 -104962763 + MER5A DNA MER1_type 1 153 -36 751 219 24 76 chr11 45820800 45821010 -104962543 + MER63A DNA MER1_type 2 200 -10 183 338 13 0 chr11 45821077 45821154 -104962399 - L2 LINE L2 -1019 2295 2218 338 269 55 86 chr11 45821192 45821449 -104962104 - L2 LINE L2 -76 3196 2948 265 348 102 13 chr11 45821680 45821916 -104961637 + L2 LINE L2 2853 3109 -163 198 0 0 0 chr11 45822393 45822415 -104961138 + (CTG)n Simple_repeat Simple_repeat 3 24 0 2167 105 7 0 chr11 45822687 45822983 -104960570 - AluSx SINE Alu -14 298 1 395 311 126 0 chr11 45823018 45823153 -104960400 + L2 LINE L2 3162 3313 0 4741 194 11 6 chr11 45823322 45823687 -104959866 + L1MB3 LINE L1 5118 5479 -704 2054 122 0 0 chr11 45823687 45823983 -104959570 + AluSx SINE Alu 1 296 -16 4741 194 11 6 chr11 45823983 45824678 -104958875 + L1MB3 LINE L1 5479 6183 0 489 288 80 72 chr11 45824678 45825039 -104958514 - L2 LINE L2 -831 2483 2120 258 282 153 90 chr11 45825069 45825370 -104958183 + L2 LINE L2 2953 3272 0 428 231 110 83 chr11 45825906 45826170 -104957383 - MLT1H LTR MaLR 0 549 279 423 272 19 0 chr11 45826215 45826318 -104957235 - FLAM_A SINE Alu -1 132 28 278 253 46 11 chr11 45826449 45826536 -104957017 - MLT1H LTR MaLR -459 90 1 2178 95 0 3 chr11 45826980 45827276 -104956277 - AluSg SINE Alu -15 295 1 659 283 37 0 chr11 45827403 45827594 -104955959 - MARNA DNA Mariner -196 390 193 195 129 0 0 chr11 45828658 45828689 -104954864 + (T)n Simple_repeat Simple_repeat 1 31 0 470 291 30 8 chr11 45829109 45829243 -104954310 - MIR SINE MIR -106 156 20 232 350 52 0 chr11 45830324 45830421 -104953132 - MIR SINE MIR -64 144 43 189 315 0 19 chr11 45830494 45830548 -104953005 + L2 LINE L2 3218 3270 -2 333 246 151 48 chr11 45830610 45830736 -104952817 - L2 LINE L2 0 3313 3175 1133 244 54 48 chr11 45830951 45831245 -104952308 + MER113 DNA MER1_type? 20 320 -201 1557 194 27 0 chr11 45831245 45831539 -104952014 + AluJb SINE Alu 3 304 -8 1133 244 54 48 chr11 45831539 45831741 -104951812 + MER113 DNA MER1_type? 320 519 -2 2061 111 7 0 chr11 45832338 45832627 -104950926 + AluSp SINE Alu 3 293 -20 2447 74 0 0 chr11 45832629 45832939 -104950614 + AluY SINE Alu 1 310 -1 1014 207 60 8 chr11 45832966 45833217 -104950336 + L1MB8 LINE L1 5914 6177 -1 225 154 0 0 chr11 45833217 45833256 -104950297 + GA-rich Low_complexity Low_complexity 1 39 0 194 355 0 0 chr11 45833407 45833483 -104950070 - MIR SINE MIR -6 256 181 2380 82 77 11 chr11 45834172 45834524 -104949029 - THE1C LTR MaLR 0 375 1 498 331 34 67 chr11 45837604 45837960 -104945593 + ERVL LTR ERVL 344 687 -5077 939 160 7 0 chr11 45838372 45838522 -104945031 - L1PA15 LINE L1 -142 6023 5873 1967 106 29 26 chr11 45838528 45838692 -104944861 - Tigger1 DNA MER2_type -1234 1184 1017 2141 153 97 5 chr11 45838692 45839084 -104944469 + MSTA LTR MaLR 1 428 0 1967 106 29 26 chr11 45839084 45839231 -104944322 - Tigger1 DNA MER2_type -1401 1017 872 761 92 0 0 chr11 45839208 45839306 -104944247 - MSTA LTR MaLR -330 98 1 * 355 183 0 0 chr11 45839306 45839358 -104944195 + Tigger1 DNA MER2_type 1021 1072 -1346 5574 142 43 2 chr11 45839331 45840239 -104943314 - Tigger1 DNA MER2_type -1473 945 1 377 301 15 8 chr11 45840472 45840605 -104942948 + ERVL LTR ERVL 1579 1712 -4052 1157 298 85 4 chr11 45840684 45841163 -104942390 + ERVL LTR ERVL 1827 2390 -3035 735 185 0 15 chr11 45841257 45841387 -104942166 - MER63 DNA MER1_type -282 780 27 487 330 20 0 chr11 45841401 45841604 -104941949 + ERVL LTR ERVL 2338 2544 -3110 403 250 62 0 chr11 45842027 45842139 -104941414 + LTR67 LTR ERVL 431 549 -8 1546 36 5 21 chr11 45842271 45842485 -104941068 + L1PA3 LINE L1 5967 6155 0 21 0 0 0 chr11 45842631 45842652 -104940901 + AT_rich Low_complexity Low_complexity 1 21 0 398 331 124 36 chr11 45842652 45843184 -104940369 + L2 LINE L2 1421 1999 -1315 1314 118 94 0 chr11 45843238 45843441 -104940112 - MER30 DNA MER1_type -6 224 3 572 280 86 110 chr11 45843443 45844236 -104939317 + L2 LINE L2 2072 2845 -469 182 304 0 0 chr11 45844591 45844637 -104938916 + L2 LINE L2 3264 3309 -4 1619 213 40 47 chr11 45844670 45845140 -104938413 + MLT1C LTR MaLR 1 467 0 189 121 0 0 chr11 45845250 45845283 -104938270 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 212 185 19 0 chr11 45845293 45845347 -104938206 + (CA)n Simple_repeat Simple_repeat 1 55 0 252 337 35 0 chr11 45845722 45845808 -104937745 + L2 LINE L2 2708 2796 -518 484 332 77 35 chr11 45845891 45846201 -104937352 + L2 LINE L2 2991 3313 0 1483 245 85 8 chr11 45846376 45846857 -104936696 - LTR33 LTR ERVL 0 521 4 1950 86 10 14 chr11 45847089 45847379 -104936174 - L1MA1 LINE L1 0 6302 6014 5967 159 16 37 chr11 45847454 45849018 -104934535 - L1MA3 LINE L1 0 6305 4801 2182 112 0 10 chr11 45849018 45849331 -104934222 - AluSx SINE Alu -2 310 1 5967 159 16 37 chr11 45849331 45849896 -104933657 - L1MA3 LINE L1 -1504 4801 4226 258 290 29 80 chr11 45852233 45852371 -104931182 - L2 LINE L2 -12 3301 3171 182 250 114 0 chr11 45852413 45852457 -104931096 + MIR3 SINE MIR 120 168 -40 2683 156 49 8 chr11 45852529 45853041 -104930512 + L1MB4 LINE L1 5640 6172 -8 409 270 85 97 chr11 45853407 45853583 -104929970 - Charlie8 DNA MER1_type -96 245 71 2227 89 0 29 chr11 45853583 45853896 -104929657 + AluSg SINE Alu 1 304 -6 409 270 85 97 chr11 45853896 45853967 -104929586 - Charlie8 DNA MER1_type -270 71 1 1663 158 0 18 chr11 45854121 45854405 -104929148 - AluJb SINE Alu -33 279 1 223 239 60 15 chr11 45854409 45854476 -104929077 - L3 LINE CR1 -180 1397 1328 1109 227 40 4 chr11 45854614 45854865 -104928688 - MIR SINE MIR 0 262 3 226 307 64 43 chr11 45855017 45855157 -104928396 + L3b LINE CR1 1317 1459 -124 1746 170 0 6 chr11 45855196 45855508 -104928045 + AluJo SINE Alu 1 310 -2 811 216 0 0 chr11 45855704 45855876 -104927677 + FRAM SINE Alu 1 172 0 345 291 8 43 chr11 45855912 45856029 -104927524 - L3 LINE CR1 -3 1574 1462 484 260 66 54 chr11 45856321 45856678 -104926875 + MLT1H LTR MaLR 100 525 -17 919 290 105 35 chr11 45856721 45857263 -104926290 + MLT1K LTR MaLR 3 582 -6 1269 68 0 0 chr11 45857275 45857457 -104926096 + L1PA3 LINE L1 5989 6170 0 26 0 0 0 chr11 45857485 45857511 -104926042 + AT_rich Low_complexity Low_complexity 1 26 0 2490 129 14 3 chr11 45857764 45858135 -104925418 + THE1C LTR MaLR 1 375 0 907 286 86 12 chr11 45858896 45859221 -104924332 + MLT1I LTR MaLR 59 407 -2 249 240 80 27 chr11 45859355 45859430 -104924123 + L2 LINE L2 3235 3313 0 231 169 0 34 chr11 45861120 45861209 -104922344 + (CGGGG)n Simple_repeat Simple_repeat 5 90 0 3470 150 37 62 chr11 45862117 45862824 -104920729 + LTR8 LTR ERV1 2 690 -1 216 356 17 0 chr11 45863554 45863669 -104919884 - L2 LINE L2 -338 2976 2860 226 343 43 14 chr11 45863936 45864076 -104919477 + L2 LINE L2 2894 3037 -235 1459 269 76 18 chr11 45864176 45864916 -104918637 + L2 LINE L2 2525 3313 0 323 242 157 56 chr11 45865220 45865356 -104918197 - MER112 DNA MER1_type -58 202 42 2156 110 3 0 chr11 45865356 45865665 -104917888 + AluSq SINE Alu 1 310 -3 323 242 157 56 chr11 45865665 45865706 -104917847 - MER112 DNA MER1_type -218 42 7 713 255 10 54 chr11 45865765 45865969 -104917584 - MIR SINE MIR -3 259 65 935 266 102 4 chr11 45866241 45866516 -104917037 - LTR33 LTR ERVL -201 320 19 522 0 0 0 chr11 45866961 45867019 -104916534 + (TG)n Simple_repeat Simple_repeat 2 59 0 180 0 0 0 chr11 45869415 45869435 -104914118 + (A)n Simple_repeat Simple_repeat 1 20 0 214 192 19 0 chr11 45870835 45870887 -104912666 + (CA)n Simple_repeat Simple_repeat 1 53 0 218 308 0 0 chr11 45871483 45871535 -104912018 + polypurine Low_complexity Low_complexity 6 57 0 219 217 43 14 chr11 45872744 45872813 -104910740 + CT-rich Low_complexity Low_complexity 2 72 0 24 32 0 0 chr11 45874406 45874437 -104909116 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr11 45875839 45875866 -104907687 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr11 45876096 45876118 -104907435 + GC_rich Low_complexity Low_complexity 1 22 0 207 55 36 73 chr11 45876391 45876446 -104907107 + (GGGA)n Simple_repeat Simple_repeat 1 53 0 210 91 0 0 chr11 45878481 45878514 -104905039 + (CAG)n Simple_repeat Simple_repeat 2 34 0 228 35 0 0 chr11 45879555 45879584 -104903969 + (CCTCG)n Simple_repeat Simple_repeat 2 30 0 422 250 39 55 chr11 45882156 45882284 -104901269 - MIR3 SINE MIR -5 203 78 242 281 157 16 chr11 45883288 45883409 -104900144 + MIR3 SINE MIR 55 192 -16 * 356 230 0 27 chr11 45883401 45883475 -104900078 - L2 LINE L2 0 3313 3242 473 208 8 33 chr11 45884681 45884801 -104898752 + MIR SINE MIR 105 221 -41 311 43 0 22 chr11 45884817 45884863 -104898690 + (TTA)n Simple_repeat Simple_repeat 3 47 0 207 0 0 0 chr11 45885204 45885227 -104898326 + (TTA)n Simple_repeat Simple_repeat 2 24 0 28 48 0 0 chr11 45885697 45885739 -104897814 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr11 45885856 45885878 -104897675 + AT_rich Low_complexity Low_complexity 1 22 0 634 226 43 108 chr11 45885977 45886256 -104897297 + MIR SINE MIR 2 262 0 198 0 0 0 chr11 45886657 45886679 -104896874 + (A)n Simple_repeat Simple_repeat 1 22 0 2064 110 37 20 chr11 45886727 45887027 -104896526 - AluY SINE Alu -6 305 1 180 0 0 0 chr11 45887031 45887051 -104896502 + (T)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr11 45887281 45887309 -104896244 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr11 45887836 45887881 -104895672 + AT_rich Low_complexity Low_complexity 1 45 0 204 292 0 0 chr11 45889965 45890037 -104893516 + A-rich Low_complexity Low_complexity 1 72 0 28 29 0 0 chr11 45890676 45890711 -104892842 + AT_rich Low_complexity Low_complexity 1 35 0 201 147 0 0 chr11 45890737 45890771 -104892782 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 194 62 31 0 chr11 45892054 45892086 -104891467 + (GA)n Simple_repeat Simple_repeat 2 34 0 238 250 0 44 chr11 45892192 45892260 -104891293 - MIR3 SINE MIR -4 204 140 186 71 0 0 chr11 45892261 45892289 -104891264 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 648 233 0 0 chr11 45892289 45892409 -104891144 - FLAM_C SINE Alu -22 121 2 252 238 38 86 chr11 45892411 45892516 -104891037 - MIR SINE MIR -56 152 53 1863 152 6 29 chr11 45892638 45892953 -104890600 - AluJo SINE Alu 0 312 5 210 296 42 0 chr11 45893148 45893219 -104890334 - L2 LINE L2 -11 3261 3188 220 171 0 49 chr11 45893232 45893273 -104890280 + L2 LINE L2 3263 3301 -12 191 425 20 12 chr11 45893487 45893734 -104889819 - L2 LINE L2 -342 2972 2724 1018 126 69 6 chr11 45893839 45894031 -104889522 - AluSg/x SINE Alu 0 310 122 267 163 23 35 chr11 45894134 45894220 -104889333 + (TTATA)n Simple_repeat Simple_repeat 4 88 0 1648 152 14 51 chr11 45894279 45894575 -104888978 + AluJb SINE Alu 5 289 -23 515 248 32 25 chr11 45894732 45894889 -104888664 + L1ME LINE L1 5643 5800 -321 1816 158 10 3 chr11 45896144 45896435 -104887118 + AluJb SINE Alu 1 293 -19 21 57 0 0 chr11 45896533 45896568 -104886985 + AT_rich Low_complexity Low_complexity 1 35 0 1571 196 21 3 chr11 45896568 45896854 -104886699 - AluJo SINE Alu -21 291 1 919 179 78 0 chr11 45896856 45897035 -104886518 - L1MC1 LINE L1 -5 6328 6136 451 229 144 53 chr11 45897338 45897526 -104886027 - MER102a DNA MER1_type -18 312 108 2188 112 0 3 chr11 45897534 45897828 -104885725 - AluSc SINE Alu -16 293 1 607 200 0 8 chr11 45898427 45898547 -104885006 + MIR SINE MIR 114 232 -30 342 0 0 0 chr11 45898751 45898789 -104884764 + (CA)n Simple_repeat Simple_repeat 2 39 0 575 284 0 0 chr11 45899003 45899137 -104884416 - MIR SINE MIR -48 214 81 1616 221 118 45 chr11 45899822 45900511 -104883042 - L1MC5 LINE L1 -268 7693 6955 3154 125 17 4 chr11 45900639 45901104 -104882449 - L1PA16 LINE L1 -2 6164 5694 3206 108 15 24 chr11 45901291 45901755 -104881798 - LTR14 LTR ERVK 0 548 89 2798 37 0 0 chr11 45901855 45902183 -104881370 - L1P LINE L1 -2286 3860 3533 689 165 38 15 chr11 45902186 45902319 -104881234 + MER3 DNA MER1_type 72 207 -2 251 288 104 32 chr11 45902761 45902886 -104880667 - MARNA DNA Mariner -194 392 259 266 271 84 32 chr11 45902977 45903132 -104880421 - L2 LINE L2 -2 3311 3149 247 52 86 0 chr11 45903148 45903206 -104880347 + (TA)n Simple_repeat Simple_repeat 2 64 0 463 203 154 8 chr11 45903631 45903754 -104879799 + L2 LINE L2 3173 3313 0 720 261 115 72 chr11 45903871 45904231 -104879322 - MLT1H LTR MaLR 0 549 169 2167 147 0 0 chr11 45904231 45904543 -104879010 - AluSx SINE Alu 0 312 1 720 261 115 72 chr11 45904543 45904573 -104878980 - MLT1H LTR MaLR -380 169 142 6543 30 4 4 chr11 45904673 45905406 -104878147 + L1PA5 LINE L1 5422 6154 0 418 237 0 0 chr11 45905406 45905482 -104878071 - MER3 DNA MER1_type -133 76 1 3455 94 89 61 chr11 45905749 45906083 -104877470 - MER4B LTR ERV1 0 610 250 2305 99 0 0 chr11 45906083 45906386 -104877167 - AluSc SINE Alu -6 303 1 3455 94 89 61 chr11 45906386 45906644 -104876909 - MER4B LTR ERV1 -360 250 1 1936 173 0 0 chr11 45906758 45907058 -104876495 + AluJb SINE Alu 1 300 -12 768 219 118 31 chr11 45907550 45907837 -104875716 + L1MC5 LINE L1 7603 7914 -47 1724 190 143 94 chr11 45908305 45908963 -104874590 - L1ME3 LINE L1 -21 6141 5452 21 36 0 0 chr11 45909183 45909211 -104874342 + AT_rich Low_complexity Low_complexity 1 28 0 1281 234 58 21 chr11 45909848 45910275 -104873278 - L1MC4 LINE L1 0 8042 7600 618 266 116 5 chr11 45910382 45910589 -104872964 - MIR SINE MIR -29 233 4 290 212 59 12 chr11 45910773 45910858 -104872695 + MIR SINE MIR 174 262 0 183 319 0 0 chr11 45910855 45910902 -104872651 - MIR3 SINE MIR -45 163 117 * 23 33 0 0 chr11 45911344 45911374 -104872179 + AT_rich Low_complexity Low_complexity 1 30 0 399 277 157 15 chr11 45912329 45912603 -104870950 - L1MC4 LINE L1 -10 8032 7720 1861 160 3 3 chr11 45913412 45913725 -104869828 - AluSp SINE Alu 0 313 1 21 0 0 0 chr11 45914674 45914695 -104868858 + AT_rich Low_complexity Low_complexity 1 21 0 2374 96 0 0 chr11 45914917 45915218 -104868335 + AluSx SINE Alu 1 301 -11 1438 164 211 13 chr11 45916204 45916516 -104867037 + MLT1A2 LTR MaLR 1 374 0 328 327 118 0 chr11 45916801 45916911 -104866642 - L2 LINE L2 -327 2986 2864 808 272 43 47 chr11 45916919 45917220 -104866333 + L2 LINE L2 3006 3305 -8 1661 203 0 3 chr11 45917688 45917988 -104865565 - AluJb SINE Alu -13 299 1 714 139 0 0 chr11 45917996 45918097 -104865456 - AluJb SINE Alu -181 131 31 2131 114 30 7 chr11 45918631 45918928 -104864625 - AluSx SINE Alu -8 304 1 1992 100 135 3 chr11 45919022 45919341 -104864212 - MER46B DNA MER2_type 0 236 1 216 296 37 28 chr11 45919414 45919522 -104864031 - L2 LINE L2 -320 2952 2844 1619 198 136 54 chr11 45919570 45920034 -104863519 - MLT1D LTR MaLR -3 502 1 25 31 0 0 chr11 45920045 45920077 -104863476 + AT_rich Low_complexity Low_complexity 1 32 0 1502 158 75 43 chr11 45920199 45920477 -104863076 - AluJo SINE Alu -25 287 1 1429 213 39 47 chr11 45920635 45920702 -104862851 - MLT1C LTR MaLR -7 460 394 2287 110 3 0 chr11 45920702 45921001 -104862552 + AluSq SINE Alu 1 300 -13 1429 213 39 47 chr11 45921001 45921397 -104862156 - MLT1C LTR MaLR -73 394 1 1038 277 91 13 chr11 45921402 45921785 -104861768 - LTR16A LTR ERVL -13 437 25 1542 277 11 0 chr11 45922092 45922370 -104861183 + AluJo SINE Alu 1 281 -31 381 149 14 40 chr11 45923115 45923189 -104860364 - MIR3 SINE MIR -2 206 135 23 0 0 0 chr11 45925771 45925794 -104857759 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr11 45927717 45927747 -104855806 + AT_rich Low_complexity Low_complexity 1 30 0 29 0 0 0 chr11 45930056 45930085 -104853468 + AT_rich Low_complexity Low_complexity 1 29 0 302 296 0 37 chr11 45930670 45930778 -104852775 - MLT1-int LTR MaLR -830 541 438 447 171 20 33 chr11 45931033 45931163 -104852390 - MLT1H LTR MaLR -402 147 17 272 364 20 20 chr11 45931212 45931407 -104852146 + Charlie8 DNA MER1_type 2 196 -2221 579 232 155 77 chr11 45931520 45931777 -104851776 - L2 LINE L2 -63 3250 2952 2148 111 0 10 chr11 45931777 45932074 -104851479 + AluSc SINE Alu 1 294 -15 579 232 155 77 chr11 45932074 45932204 -104851349 - L2 LINE L2 -361 2952 2833 2310 112 0 6 chr11 45932632 45932946 -104850607 + AluSq SINE Alu 1 312 -1 243 113 48 0 chr11 45933015 45933077 -104850476 + (TA)n Simple_repeat Simple_repeat 2 66 0 350 252 65 32 chr11 45933077 45933200 -104850353 + L1MC4 LINE L1 6610 6736 -1306 1239 129 0 10 chr11 45935320 45935514 -104848039 - AluSg/x SINE Alu 0 312 121 887 248 74 21 chr11 45935587 45935829 -104847724 + MIR SINE MIR 8 262 0 1997 129 13 16 chr11 45935888 45936198 -104847355 - AluSx SINE Alu -3 309 1 1747 279 103 65 chr11 45936546 45938189 -104845364 + L1MEc LINE L1 35 1740 -4656 2225 112 0 3 chr11 45938357 45938653 -104844900 + AluSx SINE Alu 1 295 -17 242 70 70 0 chr11 45938709 45938752 -104844801 + A-rich Low_complexity Low_complexity 2 47 0 575 275 98 99 chr11 45938762 45938896 -104844657 + L2 LINE L2 2620 2753 -560 1754 173 39 23 chr11 45938896 45939203 -104844350 - AluSx SINE Alu 0 312 1 575 275 98 99 chr11 45939203 45939576 -104843977 + L2 LINE L2 2753 3127 -186 773 113 0 0 chr11 45939632 45939738 -104843815 + FLAM_C SINE Alu 14 119 -24 193 372 0 11 chr11 45939738 45939832 -104843721 + L2 LINE L2 3221 3313 0 359 243 153 0 chr11 45940427 45940538 -104843015 + MIR SINE MIR 75 202 -60 194 366 73 0 chr11 45940909 45940991 -104842562 - L2 LINE L2 -213 3059 2972 21 36 0 0 chr11 45941111 45941139 -104842414 + AT_rich Low_complexity Low_complexity 1 28 0 280 240 289 10 chr11 45941722 45941826 -104841727 - MIR SINE MIR -95 167 35 197 146 0 73 chr11 45941848 45941889 -104841664 - L3 LINE CR1 -630 947 910 522 280 20 20 chr11 45942471 45942621 -104840932 - MIR3 SINE MIR -40 168 19 1708 175 11 25 chr11 45942662 45942947 -104840606 + AluJb SINE Alu 7 287 -25 249 165 24 35 chr11 45942947 45943032 -104840521 + (TTATA)n Simple_repeat Simple_repeat 4 87 0 301 272 53 18 chr11 45943639 45943753 -104839800 - MIR SINE MIR -98 164 47 2437 83 3 0 chr11 45943755 45944056 -104839497 - AluSp SINE Alu -11 302 1 22 0 0 0 chr11 45945708 45945730 -104837823 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 45946164 45946185 -104837368 + AT_rich Low_complexity Low_complexity 1 21 0 502 236 8 41 chr11 45946738 45946861 -104836692 - L2 LINE L2 -2 3311 3193 22 0 0 0 chr11 45947830 45947852 -104835701 + AT_rich Low_complexity Low_complexity 1 22 0 188 0 0 69 chr11 45948238 45948267 -104835286 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 370 352 57 39 chr11 45948268 45948498 -104835055 + HAL1b LINE L1 1 234 -1114 701 220 24 30 chr11 45948517 45948685 -104834868 - MIR SINE MIR -21 241 75 1108 237 118 79 chr11 45948701 45949579 -104833974 + HAL1b LINE L1 242 1154 -194 1291 135 0 0 chr11 45949728 45949936 -104833617 + L1PA13 LINE L1 5954 6161 -2 196 248 133 57 chr11 45949981 45950086 -104833467 - MIR SINE MIR -115 147 35 479 232 22 55 chr11 45950094 45950275 -104833278 - HAL1b LINE L1 -32 1316 1142 182 333 11 81 chr11 45950339 45950426 -104833127 - MIR SINE MIR -164 98 18 2095 112 3 53 chr11 45951331 45951654 -104831899 - AluSx SINE Alu -5 307 1 2499 61 0 3 chr11 45952211 45952522 -104831031 - AluY SINE Alu -1 310 1 2114 115 24 3 chr11 45952720 45953015 -104830538 - AluSx SINE Alu -11 301 1 1856 138 69 3 chr11 45953636 45953833 -104829720 - AluJb SINE Alu 0 330 105 333 0 0 0 chr11 45953833 45953870 -104829683 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1856 138 69 3 chr11 45953870 45953983 -104829570 - AluJb SINE Alu -225 105 1 349 241 278 0 chr11 45954032 45954140 -104829413 + MIR SINE MIR 29 166 -96 381 331 38 15 chr11 45954185 45954318 -104829235 - MIR SINE MIR -108 154 19 236 296 81 75 chr11 45954992 45955178 -104828375 + L2 LINE L2 3009 3195 -118 2057 272 92 55 chr11 45955203 45956003 -104827550 - L2 LINE L2 -2 3311 2542 1961 138 31 0 chr11 45956003 45956293 -104827260 + AluSq SINE Alu 1 299 -14 2057 272 92 55 chr11 45956293 45956382 -104827171 - L2 LINE L2 -771 2542 2458 254 29 29 0 chr11 45956382 45956417 -104827136 + (TG)n Simple_repeat Simple_repeat 2 37 0 2057 272 92 55 chr11 45956417 45956770 -104826783 - L2 LINE L2 -855 2458 1923 413 213 19 56 chr11 45956744 45956852 -104826701 + L2 LINE L2 3210 3313 0 * 286 259 177 44 chr11 45956863 45957021 -104826532 - L2 LINE L2 -5 3308 3130 8797 40 0 1 chr11 45957620 45959456 -104824097 - L1PA5 LINE L1 -6 6148 4307 1601 36 0 0 chr11 45959459 45959653 -104823900 + L1P LINE L1 4078 4271 -1875 41 36 0 0 chr11 45960150 45960205 -104823348 + AT_rich Low_complexity Low_complexity 1 55 0 2311 84 13 0 chr11 45960238 45960546 -104823007 - AluSx SINE Alu 0 312 1 2251 80 33 13 chr11 45962243 45962545 -104821008 + AluSg SINE Alu 1 308 -2 1658 176 0 28 chr11 45962748 45963062 -104820491 - AluJo SINE Alu 0 308 3 204 97 0 0 chr11 45963067 45963098 -104820455 + (T)n Simple_repeat Simple_repeat 1 31 0 1294 160 8 27 chr11 45964651 45964914 -104818639 - L1MB8 LINE L1 0 6178 5921 845 289 93 22 chr11 45965018 45965426 -104818127 - L2 LINE L2 -556 2758 2322 778 158 0 0 chr11 45965651 45965771 -104817782 + AluJo SINE Alu 16 135 -177 2101 93 0 7 chr11 45965771 45966041 -104817512 + AluSq SINE Alu 1 268 -45 486 277 43 7 chr11 45966079 45966220 -104817333 - L2 LINE L2 -543 2771 2626 28 0 0 0 chr11 45966622 45966650 -104816903 + AT_rich Low_complexity Low_complexity 1 28 0 369 0 0 0 chr11 45967426 45967467 -104816086 + (TG)n Simple_repeat Simple_repeat 2 42 0 2018 176 19 3 chr11 45967644 45968003 -104815550 - MLT1A1 LTR MaLR 0 365 1 188 269 84 84 chr11 45968176 45968295 -104815258 - L2 LINE L2 0 3272 3154 769 272 51 55 chr11 45968339 45968596 -104814957 + MIR SINE MIR 2 257 -5 275 162 54 27 chr11 45968673 45968747 -104814806 - MLT1L LTR MaLR -11 604 529 470 219 96 34 chr11 45968771 45968949 -104814604 - L2 LINE L2 0 3313 3125 331 257 188 0 chr11 45969315 45969459 -104814094 - MIR SINE MIR -4 258 88 788 180 0 0 chr11 45970697 45970825 -104812728 - FLAM_A SINE Alu -5 128 1 2276 119 0 0 chr11 45971261 45971573 -104811980 - AluSx SINE Alu 0 312 1 353 250 25 0 chr11 45971632 45971752 -104811801 - L1ME4a LINE L1 -11 6110 5988 24 0 0 0 chr11 45972565 45972589 -104810964 + AT_rich Low_complexity Low_complexity 1 24 0 343 314 96 19 chr11 45973303 45973459 -104810094 - MIR3 SINE MIR -10 198 31 2380 85 0 0 chr11 45974210 45974504 -104809049 - AluSx SINE Alu -18 294 1 3152 146 6 32 chr11 45974774 45975192 -104808361 - MER72 LTR ERV1 0 722 319 2540 86 21 24 chr11 45975192 45975566 -104807987 + THE1C LTR MaLR 3 375 0 3152 146 6 32 chr11 45975566 45975676 -104807877 - MER72 LTR ERV1 -403 319 208 1678 161 21 10 chr11 45975678 45975969 -104807584 - AluJo SINE Alu -16 296 3 186 43 0 0 chr11 45975983 45976006 -104807547 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 653 259 8 0 chr11 45976012 45976143 -104807410 - AluJb SINE Alu -44 268 137 208 200 30 130 chr11 45976489 45976589 -104806964 + MIR SINE MIR 94 183 -79 202 350 10 10 chr11 45976600 45976697 -104806856 + MIR SINE MIR 160 256 -6 4486 163 53 21 chr11 45977966 45978898 -104804655 - L1MB5 LINE L1 -6 6168 5208 906 449 26 23 chr11 45978908 45979213 -104804340 - THE1C LTR MaLR 0 375 70 2296 56 56 0 chr11 45981008 45981293 -104802260 + AluY SINE Alu 1 301 -10 1447 87 24 5 chr11 45981427 45981633 -104801920 - L1PA11 LINE L1 -1 6173 5964 331 280 100 0 chr11 45981878 45981978 -104801575 - L2 LINE L2 0 3272 3163 486 155 71 0 chr11 45982027 45982111 -104801442 - LTR51 LTR ERV1 0 671 582 * 1585 203 51 9 chr11 45982109 45982444 -104801109 - MER65C LTR ERV1 -112 349 1 541 324 154 20 chr11 45982491 45982585 -104800968 - L2 LINE L2 -201 3071 2991 1131 201 62 83 chr11 45982585 45982958 -104800595 - MLT1A1 LTR MaLR 0 365 1 541 324 154 20 chr11 45982958 45983325 -104800228 - L2 LINE L2 -281 2991 2543 790 284 61 61 chr11 45983742 45984133 -104799420 - MLT1J LTR MaLR -120 391 1 226 187 209 44 chr11 45984686 45984777 -104798776 - HAL1 LINE L1 -20 2487 2382 28 0 0 0 chr11 45984890 45984918 -104798635 + AT_rich Low_complexity Low_complexity 1 28 0 2425 77 0 3 chr11 45984939 45985249 -104798304 - AluY SINE Alu -1 310 2 252 0 0 0 chr11 45985329 45985357 -104798196 + (TA)n Simple_repeat Simple_repeat 2 29 0 1662 149 35 28 chr11 45985357 45985645 -104797908 - AluJo SINE Alu -18 294 5 280 297 55 14 chr11 45986594 45986739 -104796814 + HAL1 LINE L1 168 318 -2189 1003 251 115 65 chr11 45987039 45987781 -104795772 + HAL1 LINE L1 884 1662 -845 790 108 36 43 chr11 45987803 45987942 -104795611 + L1MC3 LINE L1 7503 7640 -145 718 315 74 29 chr11 45987950 45988328 -104795225 - LTR16A LTR ERVL -55 395 1 2220 139 12 55 chr11 45988671 45988966 -104794587 - Tigger3(Golem) DNA MER2_type -1 3028 2753 1375 196 79 7 chr11 45988966 45989246 -104794307 + AluJo SINE Alu 1 300 -12 2220 139 12 55 chr11 45989246 45989353 -104794200 - Tigger3(Golem) DNA MER2_type -276 2753 2643 2022 138 13 0 chr11 45990464 45990762 -104792791 + AluJb SINE Alu 1 302 -10 500 169 0 22 chr11 45991378 45991467 -104792086 + FLAM_C SINE Alu 35 121 -22 252 0 0 0 chr11 45991467 45991495 -104792058 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 186 43 0 0 chr11 45993384 45993407 -104790146 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 23 54 0 0 chr11 45993534 45993571 -104789982 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr11 45995127 45995154 -104788399 + AT_rich Low_complexity Low_complexity 1 27 0 28 0 0 0 chr11 45995264 45995292 -104788261 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 45996503 45996527 -104787026 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr11 45996590 45996628 -104786925 + AT_rich Low_complexity Low_complexity 1 38 0 195 129 0 0 chr11 45997059 45997090 -104786463 + (T)n Simple_repeat Simple_repeat 1 31 0 271 138 0 35 chr11 45997739 45997797 -104785756 + L1MA7 LINE L1 6227 6282 -9 59 0 0 0 chr11 45997800 45997859 -104785694 + AT_rich Low_complexity Low_complexity 1 59 0 229 255 29 49 chr11 45999109 45999211 -104784342 + MIR SINE MIR 122 221 -41 455 296 43 0 chr11 45999267 45999382 -104784171 + MIR3 SINE MIR 81 200 -8 2235 119 0 0 chr11 45999825 46000136 -104783417 - AluSq SINE Alu -2 311 1 261 143 6 50 chr11 46000560 46000721 -104782832 - HERV17 LTR ERV1 -7761 865 712 407 236 112 0 chr11 46001225 46001314 -104782239 + MIR3 SINE MIR 84 182 -26 879 106 16 0 chr11 46002043 46002166 -104781387 - L1PB4 LINE L1 -12 6144 6020 2132 113 0 0 chr11 46002281 46002604 -104780949 + AluSx SINE Alu 1 323 0 2338 96 3 3 chr11 46002824 46003137 -104780416 + AluSp SINE Alu 1 313 0 263 247 65 21 chr11 46003309 46003402 -104780151 - L1MC4 LINE L1 -565 7477 7381 735 218 48 75 chr11 46003406 46003554 -104779999 - L1MC4 LINE L1 -734 7308 7170 2332 99 0 0 chr11 46003554 46003847 -104779706 + AluSx SINE Alu 1 293 -19 735 218 48 75 chr11 46003847 46003992 -104779561 - L1MC4 LINE L1 -872 7170 7023 26 64 0 0 chr11 46004398 46004445 -104779108 + AT_rich Low_complexity Low_complexity 1 47 0 1786 149 0 88 chr11 46004507 46004835 -104778718 - AluJb SINE Alu -12 300 2 2260 104 0 10 chr11 46005413 46005720 -104777833 + AluSx SINE Alu 1 304 -8 200 275 138 9 chr11 46006777 46006886 -104776667 - MIR SINE MIR -8 254 132 2027 128 60 37 chr11 46006943 46007295 -104776258 - THE1B LTR MaLR 0 364 5 30 45 0 0 chr11 46007320 46007364 -104776189 + AT_rich Low_complexity Low_complexity 1 44 0 536 262 78 7 chr11 46008333 46008474 -104775079 - L2 LINE L2 -2 3311 3161 2952 3 0 0 chr11 46008474 46008791 -104774762 + AluYb8 SINE Alu 1 317 -1 403 328 61 6 chr11 46009484 46009664 -104773889 - ERVL LTR ERVL -5073 691 502 228 238 48 0 chr11 46010114 46010177 -104773376 - LTR50 LTR ERVL 0 795 730 1666 179 0 62 chr11 46010846 46011018 -104772535 - AluJb SINE Alu -7 305 161 1961 138 0 20 chr11 46011018 46011322 -104772231 - AluSx SINE Alu -14 298 1 1666 179 0 62 chr11 46011322 46011474 -104772079 - AluJb SINE Alu -151 161 1 557 244 39 94 chr11 46012138 46012446 -104771107 - MER31-int LTR ERV1 -985 3951 3661 2203 234 78 73 chr11 46012567 46013157 -104770396 - MLT1H1 LTR MaLR 0 555 3 210 134 45 0 chr11 46014711 46014778 -104768775 + (TA)n Simple_repeat Simple_repeat 1 70 0 1262 249 95 2 chr11 46015600 46016206 -104767347 - L1MEc LINE L1 -3524 2691 2072 1310 246 123 54 chr11 46016212 46016964 -104766589 - L1MEc LINE L1 -4580 1816 997 2218 70 28 0 chr11 46016964 46017249 -104766304 - AluY SINE Alu -18 293 1 1310 246 123 54 chr11 46017249 46017347 -104766206 - L1MEc LINE L1 -5399 997 907 910 227 15 103 chr11 46017382 46017655 -104765898 - L1MEc LINE L1 -6112 284 36 240 306 157 16 chr11 46019134 46019255 -104764298 - MIR3 SINE MIR -56 152 15 23 54 0 0 chr11 46019419 46019456 -104764097 + AT_rich Low_complexity Low_complexity 1 37 0 497 200 0 0 chr11 46019489 46019574 -104763979 - AluSg/x SINE Alu -22 287 203 1690 95 208 206 chr11 46019574 46020142 -104763411 - LTR12 LTR ERV1 -133 581 13 1485 122 0 14 chr11 46020142 46020355 -104763198 - AluSq SINE Alu -95 218 9 500 216 93 25 chr11 46021321 46021483 -104762070 + Charlie8 DNA MER1_type 92 264 -2153 1740 168 3 26 chr11 46021570 46021874 -104761679 + AluJo SINE Alu 2 298 -14 495 237 15 17 chr11 46022189 46022349 -104761204 - L1ME3 LINE L1 -150 6020 5863 2193 120 0 7 chr11 46023806 46024106 -104759447 + AluSx SINE Alu 1 298 -14 888 141 6 55 chr11 46024106 46024269 -104759284 + AluSg/x SINE Alu 132 286 -24 1656 181 20 7 chr11 46025388 46025681 -104757872 - AluJo SINE Alu -15 297 1 29 0 0 0 chr11 46026431 46026460 -104757093 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 46026755 46026776 -104756777 + AT_rich Low_complexity Low_complexity 1 21 0 2142 102 0 14 chr11 46026835 46027128 -104756425 - AluSx SINE Alu -9 303 15 21 0 0 0 chr11 46027223 46027244 -104756309 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr11 46027418 46027449 -104756104 + AT_rich Low_complexity Low_complexity 1 31 0 741 277 129 64 chr11 46027706 46028265 -104755288 + MLT1G1 LTR MaLR 1 595 0 781 265 57 39 chr11 46028329 46028854 -104754699 + L1ME LINE L1 5254 5793 -369 902 205 0 6 chr11 46028861 46029022 -104754531 + Tigger7 DNA MER2_type 1 160 -545 476 144 100 0 chr11 46029054 46029144 -104754409 + Tigger7 DNA MER2_type 2393 2491 0 286 294 98 0 chr11 46029548 46029650 -104753903 + L1ME4a LINE L1 5506 5617 -504 * 1652 156 81 53 chr11 46029642 46029687 -104753866 + L1ME1 LINE L1 4334 4376 -1770 204 40 0 0 chr11 46029687 46029712 -104753841 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1753 150 11 4 chr11 46029715 46029988 -104753565 - AluSx SINE Alu -37 275 1 1652 156 81 53 chr11 46029988 46030373 -104753180 + L1ME1 LINE L1 4377 4780 -1366 4216 127 64 101 chr11 46030432 46031335 -104752218 - MER21A LTR ERV1 -28 903 34 774 223 17 6 chr11 46031335 46031510 -104752043 + L1ME1 LINE L1 4917 5093 -1053 44794 41 4 2 chr11 46031511 46037652 -104745901 - L1PA4 LINE L1 0 6155 1 1054 156 45 16 chr11 46037660 46037903 -104745650 + L1ME1 LINE L1 5081 5330 -816 2175 211 31 39 chr11 46037910 46038454 -104745099 + LTR55 LTR ERV 3 542 -6 2324 183 103 100 chr11 46038460 46038953 -104744600 + L1ME1 LINE L1 5330 5827 -339 2022 151 0 0 chr11 46038953 46039252 -104744301 + AluSx SINE Alu 1 299 -13 2324 183 103 100 chr11 46039252 46039495 -104744058 + L1ME1 LINE L1 5827 6068 -98 832 156 15 7 chr11 46039642 46039777 -104743776 + BC200 scRNA scRNA 2 137 -63 569 226 116 6 chr11 46039779 46039960 -104743593 + L1ME4a LINE L1 5661 5861 -260 917 185 0 73 chr11 46040164 46040310 -104743243 + FRAM SINE Alu 1 133 -169 1752 141 0 22 chr11 46040310 46040488 -104743065 - AluSx SINE Alu -13 299 127 369 0 0 0 chr11 46040488 46040529 -104743024 + (TG)n Simple_repeat Simple_repeat 2 42 0 1752 141 0 22 chr11 46040529 46040620 -104742933 - AluSx SINE Alu -185 127 36 917 185 0 73 chr11 46040620 46040651 -104742902 + FRAM SINE Alu 133 165 -1 1958 115 3 61 chr11 46041197 46041510 -104742043 - AluSx SINE Alu -17 295 1 794 192 23 0 chr11 46041511 46041641 -104741912 - AluJo SINE Alu -178 134 2 5064 140 20 24 chr11 46041779 46041957 -104741596 - LTR39 LTR ERV1 0 783 606 2089 103 43 17 chr11 46041957 46042259 -104741294 - AluSg SINE Alu 0 310 1 5064 140 20 24 chr11 46042259 46042866 -104740687 - LTR39 LTR ERV1 -177 606 1 1723 160 0 0 chr11 46043365 46043627 -104739926 - AluSx SINE Alu -48 264 3 259 263 163 0 chr11 46043728 46043808 -104739745 - MIR SINE MIR -91 171 79 246 128 0 0 chr11 46043863 46043902 -104739651 + (CA)n Simple_repeat Simple_repeat 2 40 0 575 281 33 38 chr11 46044073 46044208 -104739345 - MIR SINE MIR -31 231 96 2721 205 120 7 chr11 46044208 46044793 -104738760 + MLT1E1 LTR MaLR 4 654 0 575 281 33 38 chr11 46044793 46044867 -104738686 - MIR SINE MIR -166 96 23 256 24 49 0 chr11 46045022 46045063 -104738490 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 12640 32 1 0 chr11 46045063 46047228 -104736325 - L1PA3 LINE L1 -13 6142 3973 8580 31 0 1 chr11 46047228 46048257 -104735296 + L1PA3 LINE L1 2941 3968 -2178 2267 107 0 7 chr11 46049611 46049910 -104733643 - AluSq SINE Alu -16 297 1 231 162 15 73 chr11 46049929 46049997 -104733556 - L1MCa LINE L1 -4361 2065 2002 29 60 0 0 chr11 46050330 46050380 -104733173 + AT_rich Low_complexity Low_complexity 1 50 0 254 200 94 133 chr11 46050697 46050877 -104732676 + L1MC4 LINE L1 5761 5933 -1875 2269 192 38 63 chr11 46051739 46051841 -104731712 + L1MC4 LINE L1 6950 7053 -989 2043 120 20 0 chr11 46051841 46052133 -104731420 + AluSx SINE Alu 1 298 -14 2269 192 38 63 chr11 46052133 46052734 -104730819 + L1MC4 LINE L1 7053 7788 -254 1161 146 25 106 chr11 46052771 46052857 -104730696 - Charlie1 DNA MER1_type 0 2761 2670 2676 65 3 20 chr11 46052857 46053198 -104730355 - L1PA7 LINE L1 0 6154 5820 1161 146 25 106 chr11 46053198 46053432 -104730121 - Charlie1 DNA MER1_type -91 2670 2467 1860 199 39 67 chr11 46053434 46053744 -104729809 - LTR2 LTR ERV1 0 449 155 414 0 0 0 chr11 46053744 46053790 -104729763 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1860 199 39 67 chr11 46053790 46053941 -104729612 - LTR2 LTR ERV1 -294 155 1 2218 208 20 12 chr11 46053941 46054649 -104728904 - HERVE LTR ERV1 -2 7811 7020 1167 191 10 10 chr11 46054737 46054941 -104728612 - HERVE LTR ERV1 -2131 6295 6092 3663 190 69 13 chr11 46054965 46055732 -104727821 - Charlie1 DNA MER1_type -299 2462 1653 1234 142 9 32 chr11 46055886 46056104 -104727449 + AluSg SINE Alu 3 215 -95 1680 11 0 0 chr11 46056313 46056495 -104727058 - AluYa5 SINE Alu -8 303 122 590 347 60 13 chr11 46056755 46057055 -104726498 - L2 LINE L2 -382 2932 2619 785 310 40 40 chr11 46057154 46057525 -104726028 - L2 LINE L2 -2810 504 134 2215 108 0 3 chr11 46059171 46059477 -104724076 - AluSx SINE Alu -7 305 1 832 129 17 0 chr11 46063148 46063264 -104720289 + FLAM_C SINE Alu 1 118 -15 22 80 0 0 chr11 46063264 46063314 -104720239 + AT_rich Low_complexity Low_complexity 1 50 0 231 36 0 0 chr11 46063794 46063822 -104719731 + (TG)n Simple_repeat Simple_repeat 2 29 0 234 394 0 0 chr11 46064986 46065057 -104718496 + L2 LINE L2 3148 3218 -54 185 337 68 68 chr11 46065092 46065581 -104717972 + L2 LINE L2 2184 2672 -642 569 185 59 44 chr11 46065658 46065793 -104717760 - L2 LINE L2 -14 3299 3163 974 273 106 35 chr11 46065822 46066277 -104717276 - L2 LINE L2 -598 2716 2230 448 245 142 13 chr11 46066305 46066460 -104717093 - MIR SINE MIR 0 262 88 2228 81 0 7 chr11 46066575 46066883 -104716670 + AluSg SINE Alu 1 306 0 23 33 0 0 chr11 46067478 46067508 -104716045 + AT_rich Low_complexity Low_complexity 1 30 0 1196 108 18 0 chr11 46067930 46068097 -104715456 - L1PA15 LINE L1 -4 6161 5992 1697 123 7 60 chr11 46068484 46068784 -104714769 - AluSx SINE Alu -28 284 1 260 261 223 0 chr11 46068856 46068986 -104714567 - L1ME4a LINE L1 -83 6038 5880 2607 144 55 0 chr11 46069358 46069762 -104713791 - MSTB LTR MaLR 0 426 1 342 80 0 0 chr11 46070115 46070165 -104713388 + (GA)n Simple_repeat Simple_repeat 1 50 0 405 209 22 0 chr11 46070764 46070855 -104712698 - MIR SINE MIR -120 142 50 1592 196 0 0 chr11 46070855 46071149 -104712404 - AluJo SINE Alu 0 305 12 367 344 43 13 chr11 46071175 46071589 -104711964 + LTR16B LTR ERVL 8 463 -1 4665 82 39 46 chr11 46071782 46071919 -104711634 + MER4A LTR ERV1 1 138 -526 2372 92 0 0 chr11 46071919 46072244 -104711309 + AluSx SINE Alu 1 325 0 4665 82 39 46 chr11 46072244 46072772 -104710781 + MER4A LTR ERV1 138 664 0 230 306 35 12 chr11 46072880 46072965 -104710588 + MLT1J2 LTR MaLR 2 88 -362 361 224 50 60 chr11 46073062 46073230 -104710323 + MLT1J LTR MaLR 232 460 -51 2021 145 10 0 chr11 46074108 46074405 -104709148 + AluSx SINE Alu 1 300 -12 1910 139 7 20 chr11 46074451 46074737 -104708816 - L1PA15 LINE L1 0 6165 5882 2033 181 108 26 chr11 46074737 46075190 -104708363 + LTR2B LTR ERV1 1 490 0 1910 139 7 20 chr11 46075190 46075206 -104708347 - L1PA15 LINE L1 -283 5882 5867 1036 100 31 0 chr11 46075448 46075608 -104707945 + MER41B LTR ERV1 1 165 -470 202 211 0 0 chr11 46076277 46076315 -104707238 + (CA)n Simple_repeat Simple_repeat 2 39 0 228 211 379 0 chr11 46078487 46078582 -104704971 - MIR SINE MIR -14 248 118 262 314 47 23 chr11 46079101 46079187 -104704366 - MIR SINE MIR -61 147 60 2094 138 0 10 chr11 46079354 46079666 -104703887 + AluSx SINE Alu 1 309 -3 490 209 129 19 chr11 46079861 46080180 -104703373 - MLT1J2 LTR MaLR 0 450 37 2333 101 0 7 chr11 46081430 46081737 -104701816 + AluSx SINE Alu 5 309 -3 909 185 48 16 chr11 46083378 46083567 -104699986 - MER3 DNA MER1_type -8 201 7 640 262 50 45 chr11 46083919 46084140 -104699413 + MIR SINE MIR 20 241 -21 189 250 228 52 chr11 46086890 46087026 -104696527 + L2 LINE L2 3152 3311 -2 265 234 153 18 chr11 46087108 46087219 -104696334 - L1ME4a LINE L1 -216 5905 5780 250 297 31 0 chr11 46087233 46087297 -104696256 - L2 LINE L2 -13 3300 3235 686 253 91 78 chr11 46087373 46087648 -104695905 - L1ME4a LINE L1 -430 5691 5408 2402 97 0 6 chr11 46087648 46087959 -104695594 - AluSx SINE Alu -3 309 1 686 253 91 78 chr11 46087959 46088078 -104695475 - L1ME4a LINE L1 -713 5408 5292 324 290 103 58 chr11 46088091 46088401 -104695152 - L1ME4a LINE L1 -885 5261 4938 399 282 88 37 chr11 46088487 46088703 -104694850 - MIR SINE MIR -33 229 3 600 267 81 61 chr11 46088785 46089081 -104694472 - MER102b DNA MER1_type -24 317 16 226 284 80 23 chr11 46089466 46089554 -104693999 + L2 LINE L2 3134 3226 -46 1802 147 87 82 chr11 46090829 46090963 -104692590 - Charlie1a DNA MER1_type -1340 1421 1289 2417 95 0 0 chr11 46090963 46091269 -104692284 + AluSg SINE Alu 1 306 -4 1802 147 87 82 chr11 46091269 46091596 -104691957 - Charlie1a DNA MER1_type -1472 1289 958 476 171 34 0 chr11 46094250 46094338 -104689215 - Charlie1a DNA MER1_type -481 974 884 1190 117 50 54 chr11 46094339 46094561 -104688992 + AluJo SINE Alu 86 306 -6 1190 177 13 13 chr11 46094565 46094791 -104688762 - Charlie1a DNA MER1_type -562 893 668 3398 58 21 12 chr11 46094791 46095184 -104688369 + MLT2A1 LTR ERVL 1 400 -44 288 0 0 0 chr11 46095184 46095216 -104688337 + (TG)n Simple_repeat Simple_repeat 2 33 0 3398 58 21 12 chr11 46095216 46095254 -104688299 + MLT2A1 LTR ERVL 400 436 -8 2851 214 76 20 chr11 46095250 46095891 -104687662 - Charlie1a DNA MER1_type -777 678 2 * 2460 126 25 3 chr11 46095918 46096274 -104687279 - THE1B LTR MaLR 0 364 1 258 143 32 48 chr11 46096578 46096641 -104686912 - L1MB1 LINE L1 -8 6181 6120 577 203 15 30 chr11 46097559 46097692 -104685861 + FLAM_A SINE Alu 9 139 -3 708 186 0 0 chr11 46097810 46097912 -104685641 - FLAM_C SINE Alu -39 104 3 1218 193 28 0 chr11 46098173 46098386 -104685167 + MER20 DNA MER1_type 1 219 0 182 239 87 0 chr11 46099577 46099623 -104683930 - L2 LINE L2 -22 3250 3201 204 97 0 0 chr11 46100095 46100126 -104683427 + (TAA)n Simple_repeat Simple_repeat 2 32 0 540 295 76 31 chr11 46100131 46100355 -104683198 - MIR SINE MIR -6 256 23 1187 165 128 77 chr11 46100449 46100687 -104682866 - MER2 DNA MER2_type 0 345 84 2451 78 0 0 chr11 46100687 46100980 -104682573 - AluSc SINE Alu -16 293 1 1187 165 128 77 chr11 46100980 46101068 -104682485 - MER2 DNA MER2_type -261 84 2 318 255 78 0 chr11 46101521 46101623 -104681930 + L2 LINE L2 2909 3018 -254 506 254 87 0 chr11 46102124 46102241 -104681312 + MIR SINE MIR 78 210 -52 2126 114 13 0 chr11 46102241 46102539 -104681014 + AluSq SINE Alu 3 304 -9 506 254 87 0 chr11 46102539 46102559 -104680994 + MIR SINE MIR 210 227 -35 562 288 28 17 chr11 46102685 46102862 -104680691 - MARNA DNA Mariner -123 463 285 309 269 199 7 chr11 46102908 46103049 -104680504 - MARNA DNA Mariner -411 175 8 1839 129 7 40 chr11 46103161 46103464 -104680089 + AluJb SINE Alu 1 293 -19 2314 94 0 28 chr11 46103468 46103786 -104679767 + AluY SINE Alu 2 310 -1 1462 284 0 106 chr11 46103949 46104280 -104679273 + AluSq SINE Alu 1 296 -7 192 224 86 17 chr11 46104280 46104338 -104679215 + MIR SINE MIR 101 162 -100 2775 118 15 0 chr11 46104478 46104868 -104678685 - L1PA13 LINE L1 -5 6158 5763 218 333 72 110 chr11 46105476 46105921 -104677632 + L2 LINE L2 2837 3264 -8 1814 170 0 13 chr11 46106537 46106837 -104676716 + AluJo SINE Alu 1 296 -16 180 0 0 0 chr11 46107197 46107217 -104676336 + (A)n Simple_repeat Simple_repeat 1 20 0 235 278 175 10 chr11 46109407 46109504 -104674049 - MER5A DNA MER1_type -22 167 55 398 243 9 37 chr11 46109851 46109958 -104673595 - MER5A DNA MER1_type -43 146 43 346 207 118 59 chr11 46110184 46110319 -104673234 + MER5A DNA MER1_type 47 189 0 * 413 264 69 23 chr11 46110319 46110489 -104673064 + MIR SINE MIR 17 194 -68 410 239 232 2 chr11 46111305 46111480 -104672073 + MIR SINE MIR 37 250 -12 213 159 0 68 chr11 46112086 46112130 -104671423 - MER5A DNA MER1_type -114 75 35 * 251 186 34 17 chr11 46112092 46112151 -104671402 + MER5A DNA MER1_type 129 188 -1 653 221 9 0 chr11 46112161 46112274 -104671279 + MER81 DNA DNA 1 114 0 564 256 80 28 chr11 46112422 46112598 -104670955 + LTR41 LTR ERVL 3 187 -586 285 294 12 0 chr11 46112672 46112757 -104670796 + ERVL LTR ERVL 549 634 -5130 2223 313 65 56 chr11 46112800 46113940 -104669613 + ERVL LTR ERVL 753 1910 -3854 2084 81 59 0 chr11 46113940 46114213 -104669340 - AluY SINE Alu -22 289 1 2223 313 65 56 chr11 46114213 46114478 -104669075 + ERVL LTR ERVL 1910 2171 -3593 1605 121 13 4 chr11 46114480 46114719 -104668834 - Tigger5 DNA MER2_type -2 2321 2081 540 172 43 0 chr11 46114711 46114804 -104668749 - Tigger5 DNA MER2_type -2225 98 2 * 1647 244 21 33 chr11 46114804 46115234 -104668319 + ERVL LTR ERVL 2169 2593 -3171 2387 85 0 7 chr11 46115261 46115566 -104667987 + AluY SINE Alu 1 303 -8 1243 99 6 0 chr11 46115566 46115727 -104667826 + AluSg/x SINE Alu 134 295 -17 560 325 57 0 chr11 46115727 46115955 -104667598 + ERVL LTR ERVL 2615 2855 -2909 2564 262 87 14 chr11 46115984 46116720 -104666833 + ERVL LTR ERVL 4142 4931 -833 387 299 43 52 chr11 46116716 46116927 -104666626 + ERVL LTR ERVL 5101 5309 -455 * 572 221 101 20 chr11 46117337 46117486 -104666067 + LTR41 LTR ERVL 7 167 -606 186 43 0 0 chr11 46117542 46117565 -104665988 + (TC)n Simple_repeat Simple_repeat 2 24 0 1629 100 9 0 chr11 46117565 46117775 -104665778 - AluSg/x SINE Alu -32 280 69 1625 221 68 25 chr11 46117817 46118260 -104665293 + MLT1C LTR MaLR 6 467 0 602 240 19 114 chr11 46118334 46118518 -104665035 + LTR41 LTR ERVL 480 680 -93 3100 116 33 2 chr11 46118518 46118967 -104664586 + MER4C LTR ERV1 2 464 -1 602 240 19 114 chr11 46118967 46119043 -104664510 + LTR41 LTR ERVL 680 707 -66 1970 142 3 37 chr11 46119043 46119366 -104664187 - AluSx SINE Alu 0 312 1 602 240 19 114 chr11 46119366 46119421 -104664132 + LTR41 LTR ERVL 707 766 -7 293 318 39 8 chr11 46119632 46119761 -104663792 + MER5A DNA MER1_type 1 133 -56 * 329 192 42 108 chr11 46119665 46119763 -104663790 - MER5A DNA MER1_type -22 167 77 1702 91 141 8 chr11 46119763 46120026 -104663527 - AluSx SINE Alu -13 299 2 329 192 42 108 chr11 46120026 46120047 -104663506 - MER5A DNA MER1_type -112 77 56 328 218 24 147 chr11 46120884 46120975 -104662578 - MIR SINE MIR 0 262 200 2982 6 0 0 chr11 46120975 46121293 -104662260 - AluYb8 SINE Alu 0 318 1 328 218 24 147 chr11 46121293 46121371 -104662182 - MIR SINE MIR -62 200 114 241 299 10 72 chr11 46121651 46121748 -104661805 + MIR SINE MIR 26 116 -146 501 329 15 0 chr11 46121778 46121915 -104661638 - L2 LINE L2 0 3272 3134 1012 232 99 81 chr11 46122069 46122414 -104661139 - MLT1H LTR MaLR -198 351 1 291 105 0 0 chr11 46122538 46122576 -104660977 + U2 snRNA snRNA 1 38 -150 2095 104 10 20 chr11 46123048 46123345 -104660208 - AluSq SINE Alu -17 296 3 384 321 150 47 chr11 46123668 46124008 -104659545 + L1MEd LINE L1 2 376 -5743 232 189 11 11 chr11 46124013 46124103 -104659450 + A-rich Low_complexity Low_complexity 1 90 0 186 43 0 0 chr11 46124242 46124265 -104659288 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 419 289 99 41 chr11 46124297 46124691 -104658862 + L1MEd LINE L1 544 960 -5159 2038 155 0 0 chr11 46125116 46125420 -104658133 - AluJb SINE Alu -8 304 1 473 264 51 71 chr11 46125470 46125905 -104657648 + L1MCc LINE L1 1088 1681 -4991 1762 118 4 4 chr11 46125905 46126151 -104657402 - AluSx SINE Alu -25 287 42 473 264 51 71 chr11 46126151 46126250 -104657303 + L1MCc LINE L1 1681 1780 -4892 313 292 0 0 chr11 46126433 46126546 -104657007 + C-rich Low_complexity Low_complexity 1 113 0 2971 152 121 38 chr11 46126960 46127637 -104655916 + L1MC2 LINE L1 5612 6344 0 494 257 94 103 chr11 46128162 46128309 -104655244 + L1MEd LINE L1 561 708 -5423 1889 153 3 3 chr11 46128309 46128596 -104654957 + AluJo SINE Alu 1 287 -25 494 257 94 103 chr11 46128596 46128856 -104654697 + L1MEd LINE L1 708 969 -5162 1919 141 0 11 chr11 46128856 46129140 -104654413 - AluJo SINE Alu -31 281 1 494 257 94 103 chr11 46129140 46129316 -104654237 + L1MEd LINE L1 969 1034 -5097 2113 108 13 16 chr11 46129316 46129623 -104653930 + AluSx SINE Alu 1 306 -6 494 257 94 103 chr11 46129623 46129903 -104653650 + L1MEd LINE L1 1034 1315 -4816 348 240 42 21 chr11 46129914 46130010 -104653543 - HsTC2 DNA Tc2 -2 1896 1799 2137 71 10 51 chr11 46130146 46130492 -104653061 + AluSx SINE Alu 1 334 0 271 277 76 28 chr11 46130752 46130966 -104652587 + L1M1 LINE L1 3492 3719 -3846 487 265 93 29 chr11 46130979 46131258 -104652295 + L1M1 LINE L1 3751 4047 -3518 680 131 0 0 chr11 46131291 46131390 -104652163 + AluJ/FLAM SINE Alu 2 100 -212 667 197 23 0 chr11 46131391 46131523 -104652030 + AluJo/FRAM SINE Alu 165 299 -13 2488 69 3 3 chr11 46131571 46131877 -104651676 + AluSg SINE Alu 1 306 -4 1372 164 73 31 chr11 46131918 46132205 -104651348 + AluJo SINE Alu 1 299 -13 1603 198 86 68 chr11 46132235 46132724 -104650829 - MLT1D LTR MaLR -7 498 1 403 221 88 15 chr11 46132737 46132873 -104650680 - MIR SINE MIR -27 235 90 2103 222 100 19 chr11 46132937 46133558 -104649995 - L1MC4 LINE L1 0 8042 7372 888 266 150 27 chr11 46133821 46134407 -104649146 + L1M1 LINE L1 4543 5200 -2365 502 178 9 19 chr11 46134471 46134578 -104648975 - AluSc SINE Alu 0 309 204 288 0 0 0 chr11 46134749 46134781 -104648772 + (CA)n Simple_repeat Simple_repeat 2 33 0 2007 149 3 0 chr11 46134915 46135204 -104648349 - AluSx SINE Alu -17 295 6 1366 142 32 5 chr11 46135491 46135709 -104647844 + AluJb SINE Alu 84 307 -5 1004 243 149 19 chr11 46136493 46136868 -104646685 - MLT1L LTR MaLR -55 560 137 11922 133 27 30 chr11 46137434 46137977 -104645576 + L1MA1 LINE L1 3018 3561 -2741 2722 17 0 0 chr11 46137977 46138270 -104645283 + AluYa5 SINE Alu 1 293 -18 11922 133 27 30 chr11 46138270 46138542 -104645011 + L1MA1 LINE L1 3561 3832 -2470 1494 97 31 18 chr11 46138542 46138769 -104644784 + MER30 DNA MER1_type 1 230 0 11922 133 27 30 chr11 46138769 46141249 -104642304 + L1MA1 LINE L1 3832 6302 0 30 0 0 0 chr11 46141249 46141279 -104642274 + AT_rich Low_complexity Low_complexity 1 30 0 732 294 47 13 chr11 46141279 46141514 -104642039 + LTR16C LTR ERVL 107 349 -142 1245 67 51 6 chr11 46141514 46141692 -104641861 - L1M1 LINE L1 -822 5482 5297 555 178 136 0 chr11 46141698 46141816 -104641737 + LTR16C LTR ERVL 358 491 0 599 324 89 34 chr11 46143187 46143780 -104639773 + L2 LINE L2 2340 2965 -349 762 265 60 20 chr11 46143834 46144083 -104639470 + MIR SINE MIR 4 262 0 263 352 11 0 chr11 46144100 46144188 -104639365 + L2 LINE L2 2991 3079 -193 6382 99 18 3 chr11 46144276 46145182 -104638371 - L1PA8 LINE L1 0 6172 5254 300 321 12 0 chr11 46145188 46145272 -104638281 + L2 LINE L2 3175 3259 -13 2403 89 17 14 chr11 46145277 46145624 -104637929 + L1PA13 LINE L1 5810 6157 -6 204 40 0 0 chr11 46145774 46145799 -104637754 + (GAA)n Simple_repeat Simple_repeat 2 26 0 2197 117 3 0 chr11 46145883 46146174 -104637379 - AluSq SINE Alu -21 292 1 1313 157 0 48 chr11 46146349 46146578 -104636975 - AluSx SINE Alu -94 218 1 1677 171 45 0 chr11 46146766 46147052 -104636501 - AluJo SINE Alu -13 299 1 398 250 85 64 chr11 46147166 46147354 -104636199 + MIR SINE MIR 20 211 -51 307 248 128 34 chr11 46148333 46148450 -104635103 + MIR3 SINE MIR 74 201 -7 21 36 0 0 chr11 46148925 46148953 -104634600 + AT_rich Low_complexity Low_complexity 1 28 0 256 301 98 14 chr11 46150028 46150171 -104633382 + Charlie8 DNA MER1_type 3 157 -2260 262 145 129 16 chr11 46150254 46150316 -104633237 + Charlie8 DNA MER1_type 1360 1428 -989 512 202 118 0 chr11 46150645 46150764 -104632789 - MIR SINE MIR -107 155 23 834 147 0 22 chr11 46150929 46151065 -104632488 + FLAM_A SINE Alu 1 133 0 411 21 0 0 chr11 46151065 46151113 -104632440 + (TA)n Simple_repeat Simple_repeat 2 49 0 1113 237 142 39 chr11 46151136 46151622 -104631931 - L2 LINE L2 -1 3312 2720 2043 126 0 7 chr11 46151622 46151954 -104631599 + AluSx SINE Alu 1 330 0 1113 237 142 39 chr11 46151954 46152262 -104631291 - L2 LINE L2 -593 2720 2445 236 263 213 12 chr11 46152603 46152763 -104630790 - MIR SINE MIR -70 192 1 2132 132 0 0 chr11 46153245 46153541 -104630012 - AluSx SINE Alu -16 296 1 200 308 155 25 chr11 46153685 46153988 -104629565 + L2 LINE L2 2703 3039 -274 183 225 157 11 chr11 46154671 46154760 -104628793 - MIR SINE MIR 0 262 161 26 30 0 0 chr11 46155621 46155654 -104627899 + AT_rich Low_complexity Low_complexity 1 33 0 182 149 0 85 chr11 46155922 46155969 -104627584 + MIR SINE MIR 218 260 -2 320 272 142 12 chr11 46157635 46157804 -104625749 - MIR SINE MIR -37 225 35 248 245 92 10 chr11 46161199 46161297 -104622256 + MIR SINE MIR 38 143 -65 284 320 75 41 chr11 46162147 46162238 -104621315 - L1ME4a LINE L1 -56 6065 5979 1757 135 14 7 chr11 46162238 46162519 -104621034 - AluJb SINE Alu -29 283 1 284 320 75 41 chr11 46162519 46162746 -104620807 - L1ME4a LINE L1 -142 5979 5736 417 217 35 56 chr11 46162886 46163029 -104620524 - MIR SINE MIR -10 252 113 690 215 17 41 chr11 46163059 46163231 -104620322 - L1ME4a LINE L1 -430 5691 5524 307 188 156 5 chr11 46164485 46164581 -104618972 + MIR SINE MIR 41 145 -73 1764 161 3 58 chr11 46164681 46164866 -104618687 - AluJo SINE Alu -1 311 117 180 0 0 0 chr11 46164866 46164886 -104618667 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2150 114 7 0 chr11 46164889 46165178 -104618375 - AluSq SINE Alu -22 291 1 1764 161 3 58 chr11 46165178 46165317 -104618236 - AluJo SINE Alu -197 115 1 282 316 11 11 chr11 46165740 46165807 -104617746 + MIR3 SINE MIR 90 159 -49 2294 158 54 5 chr11 46165807 46166213 -104617340 + MSTB LTR MaLR 1 426 0 282 316 11 11 chr11 46166213 46166240 -104617313 + MIR3 SINE MIR 158 184 -24 252 86 0 0 chr11 46166279 46166314 -104617239 + (CA)n Simple_repeat Simple_repeat 1 35 0 503 264 66 30 chr11 46166314 46166481 -104617072 + MER112 DNA MER1_type 88 260 0 335 188 50 40 chr11 46166987 46167088 -104616465 + MIR SINE MIR 28 129 -133 2006 155 0 7 chr11 46167731 46168041 -104615512 - AluSx SINE Alu -4 308 1 245 267 27 13 chr11 46168372 46168447 -104615106 - MIR SINE MIR -71 137 62 272 209 12 0 chr11 46169530 46169616 -104613937 + CT-rich Low_complexity Low_complexity 1 87 0 231 167 0 0 chr11 46169935 46169977 -104613576 + (CA)n Simple_repeat Simple_repeat 1 42 0 242 339 25 8 chr11 46170588 46170709 -104612844 - MIR3 SINE MIR -4 204 82 747 166 0 58 chr11 46171123 46171262 -104612291 - FLAM_A SINE Alu -2 131 1 204 245 0 0 chr11 46171871 46171920 -104611633 - MIR SINE MIR -10 252 204 207 314 0 0 chr11 46172091 46172142 -104611411 - MIR SINE MIR -113 95 45 212 278 78 22 chr11 46172794 46172884 -104610669 - L2 LINE L2 -208 3105 3011 * 282 241 60 17 chr11 46172873 46172989 -104610564 - MIR3 SINE MIR -73 135 15 230 261 81 0 chr11 46172979 46173090 -104610463 + L2 LINE L2 1985 2104 -1210 * 195 244 178 0 chr11 46173142 46173232 -104610321 + L2 LINE L2 2231 2336 -978 504 302 82 35 chr11 46173258 46173596 -104609957 - MLT1J1 LTR MaLR -40 410 54 2173 123 7 0 chr11 46173992 46174300 -104609253 + AluSx SINE Alu 1 310 -2 545 293 79 53 chr11 46174990 46175085 -104608468 + L2 LINE L2 2369 2460 -854 2042 131 10 0 chr11 46175085 46175375 -104608178 - AluSx SINE Alu -17 295 3 545 293 79 53 chr11 46175375 46175597 -104607956 + L2 LINE L2 2460 2694 -620 240 35 0 0 chr11 46175598 46175627 -104607926 + (TTA)n Simple_repeat Simple_repeat 1 29 0 866 142 0 0 chr11 46175630 46175750 -104607803 - FLAM_C SINE Alu -23 120 1 535 252 163 58 chr11 46175751 46175829 -104607724 + L2 LINE L2 2686 2754 -559 2324 73 3 17 chr11 46175829 46176129 -104607424 - AluY SINE Alu -15 296 1 535 252 163 58 chr11 46176129 46176335 -104607218 + L2 LINE L2 2754 3001 -312 684 216 29 86 chr11 46176370 46176615 -104606938 + MIR SINE MIR 29 259 -3 263 288 144 18 chr11 46176781 46176892 -104606661 + L2 LINE L2 3144 3268 -4 608 249 155 19 chr11 46177131 46177344 -104606209 + MIR SINE MIR 21 262 0 384 22 0 0 chr11 46177501 46177546 -104606007 + (TG)n Simple_repeat Simple_repeat 1 45 0 24 0 0 0 chr11 46177927 46177951 -104605602 + GC_rich Low_complexity Low_complexity 1 24 0 22 103 0 0 chr11 46178146 46178224 -104605329 + GC_rich Low_complexity Low_complexity 1 78 0 29 70 0 0 chr11 46178380 46178437 -104605116 + GC_rich Low_complexity Low_complexity 1 57 0 303 324 149 31 chr11 46178470 46178692 -104604861 + L1M2 LINE L1 449 696 -6153 23 68 0 0 chr11 46178932 46178976 -104604577 + GC_rich Low_complexity Low_complexity 1 44 0 1958 134 6 16 chr11 46181207 46181521 -104602032 + AluJb SINE Alu 1 311 -1 2873 179 72 9 chr11 46181800 46182399 -104601154 - Charlie1a DNA MER1_type -772 683 2 298 232 14 0 chr11 46182399 46182468 -104601085 + L1MC4 LINE L1 7833 7902 -140 1981 141 7 0 chr11 46182770 46183074 -104600479 - AluSx SINE Alu -6 306 1 2232 114 0 0 chr11 46183287 46183584 -104599969 + AluSx SINE Alu 1 297 -15 222 37 0 0 chr11 46184518 46184545 -104599008 + (A)n Simple_repeat Simple_repeat 1 27 0 1095 199 6 6 chr11 46184623 46184799 -104598754 + MER45A DNA AcHobo 2 177 -1 534 233 30 38 chr11 46185176 46185309 -104598244 - L2 LINE L2 0 3272 3141 1543 160 66 4 chr11 46185509 46185765 -104597788 + AluJb SINE Alu 12 283 -29 607 165 79 24 chr11 46185832 46185996 -104597557 - MER104 DNA Tc2 -5 175 3 500 164 10 67 chr11 46186277 46186381 -104597172 - Tigger7 DNA MER2_type -1 2586 2489 947 165 63 0 chr11 46186382 46186540 -104597013 - Tigger7 DNA MER2_type -468 265 98 2441 92 0 6 chr11 46186543 46186857 -104596696 + AluSq SINE Alu 1 312 -1 2327 117 0 0 chr11 46187083 46187392 -104596161 + AluSx SINE Alu 1 309 -3 862 161 0 0 chr11 46188522 46188652 -104594901 - FLAM_A SINE Alu 0 133 4 322 232 61 50 chr11 46188799 46188898 -104594655 - L2 LINE L2 0 3272 3173 447 304 136 0 chr11 46190441 46190625 -104592928 - LTR16A LTR ERVL -241 209 1 286 218 201 0 chr11 46191064 46191159 -104592394 - AluSc SINE Alu -118 181 110 240 259 133 32 chr11 46191355 46191513 -104592040 + MLT1L LTR MaLR 204 377 -238 913 252 97 43 chr11 46191583 46192070 -104591483 - L2 LINE L2 -71 3242 2727 309 239 114 0 chr11 46192070 46192158 -104591395 + AluJb SINE Alu 91 188 -114 302 333 75 13 chr11 46193260 46193419 -104590134 - MIR SINE MIR -71 191 23 898 142 116 0 chr11 46194512 46194667 -104588886 + MER2 DNA MER2_type 1 173 -172 317 264 28 0 chr11 46194779 46194851 -104588702 + MER2 DNA MER2_type 269 342 -3 553 156 85 35 chr11 46194939 46195080 -104588473 - MER106B DNA MER1_type -9 1050 903 216 0 0 0 chr11 46196620 46196644 -104586909 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 2304 104 0 3 chr11 46196690 46196989 -104586564 + AluSx SINE Alu 1 298 -14 603 273 109 50 chr11 46197125 46197430 -104586123 - L2 LINE L2 -700 2614 2274 486 88 0 0 chr11 46197430 46197498 -104586055 + (TA)n Simple_repeat Simple_repeat 2 69 0 603 273 109 50 chr11 46197498 46197631 -104585922 - L2 LINE L2 -1040 2274 2150 1493 165 18 48 chr11 46197717 46197812 -104585741 - MER33 DNA MER1_type -2261 324 228 2439 75 0 10 chr11 46197812 46198120 -104585433 - AluY SINE Alu -6 305 1 1493 165 18 48 chr11 46198120 46198357 -104585196 - MER33 DNA MER1_type -2357 228 2 1079 200 47 28 chr11 46198443 46198658 -104584895 + MER20 DNA MER1_type 1 219 0 1546 269 49 65 chr11 46201567 46202158 -104581395 - MER21B LTR ERV1 -156 707 127 3632 147 51 12 chr11 46202158 46202805 -104580748 + L1MA4 LINE L1 5629 6300 0 1546 269 49 65 chr11 46202805 46202872 -104580681 - MER21B LTR ERV1 -736 127 60 634 363 62 11 chr11 46203075 46203571 -104579982 - L2 LINE L2 -219 3094 2569 435 235 151 24 chr11 46203695 46203861 -104579692 - MIR SINE MIR -8 254 68 288 320 70 19 chr11 46203861 46204017 -104579536 - L2 LINE L2 -856 2458 2295 203 214 0 0 chr11 46204796 46204838 -104578715 + L2 LINE L2 3229 3270 -2 350 286 197 26 chr11 46204867 46205071 -104578482 - MIR SINE MIR -12 250 14 2257 78 7 3 chr11 46205197 46205514 -104578039 + AluSp SINE Alu 1 318 0 324 0 0 0 chr11 46206028 46206064 -104577489 + (TA)n Simple_repeat Simple_repeat 1 36 0 6991 118 12 4 chr11 46207238 46208379 -104575174 - L1MA4A LINE L1 0 6303 5153 2305 97 0 0 chr11 46208499 46208798 -104574755 - AluY SINE Alu -11 300 2 725 234 51 0 chr11 46209870 46210045 -104573508 + MIR SINE MIR 7 190 -72 280 314 152 33 chr11 46210393 46210603 -104572950 + L2 LINE L2 3038 3272 0 228 321 92 0 chr11 46210876 46210985 -104572568 - L2 LINE L2 -212 3060 2942 438 318 90 10 chr11 46211210 46211411 -104572142 + MIR SINE MIR 7 223 -39 29 0 0 0 chr11 46212252 46212281 -104571272 + AT_rich Low_complexity Low_complexity 1 29 0 2703 101 8 0 chr11 46212281 46212647 -104570906 - L1PB1 LINE L1 -1 6150 5782 342 127 0 0 chr11 46212647 46212718 -104570835 + (TA)n Simple_repeat Simple_repeat 1 71 0 4374 180 5 4 chr11 46212719 46213698 -104569855 - L1PB1 LINE L1 -714 5437 4458 251 235 20 0 chr11 46213713 46213764 -104569789 - L2 LINE L2 -20 3252 3201 217 411 0 0 chr11 46215835 46215925 -104567628 - L2 LINE L2 -529 2785 2696 325 346 31 31 chr11 46217229 46217391 -104566162 + L3 LINE CR1 35 196 -1381 5460 45 2 0 chr11 46217994 46218615 -104564938 - L1PA5 LINE L1 -6 6148 5527 35 24 0 0 chr11 46218673 46218715 -104564838 + AT_rich Low_complexity Low_complexity 1 42 0 1985 158 0 22 chr11 46218908 46219224 -104564329 - AluJo SINE Alu -1 311 3 248 293 103 0 chr11 46219258 46219374 -104564179 + L2 LINE L2 3174 3301 -12 248 316 194 0 chr11 46219468 46219607 -104563946 + L3 LINE CR1 1277 1442 -135 834 224 117 75 chr11 46219610 46219918 -104563635 + MER102a DNA MER1_type 1 321 -9 1857 199 12 12 chr11 46220022 46220364 -104563189 - MLT1A1 LTR MaLR 0 365 24 1009 104 8 0 chr11 46220369 46220503 -104563050 + AluJb SINE Alu 1 135 -177 1942 152 0 0 chr11 46220503 46220799 -104562754 + AluJb SINE Alu 1 296 -16 2671 45 0 3 chr11 46221726 46222037 -104561516 - AluY SINE Alu -1 310 1 2781 10 3 0 chr11 46223792 46224094 -104559459 - AluYa5 SINE Alu -8 303 1 763 161 7 14 chr11 46226940 46227083 -104556470 - L1MB8 LINE L1 -2 6176 6035 24 53 0 0 chr11 46227091 46227129 -104556424 + AT_rich Low_complexity Low_complexity 1 38 0 5317 156 31 19 chr11 46230957 46232145 -104551408 - L1MB3 LINE L1 -1 6182 4975 575 293 121 17 chr11 46232454 46232686 -104550867 - MIR SINE MIR 0 262 7 286 286 114 29 chr11 46233992 46234132 -104549421 + L2 LINE L2 2686 2837 -477 1767 235 98 65 chr11 46235365 46235571 -104547982 - L1MD3 LINE L1 0 8039 7841 1677 170 37 0 chr11 46235571 46235873 -104547680 - AluJb SINE Alu 0 312 1 1767 235 98 65 chr11 46235873 46236478 -104547075 - L1MD3 LINE L1 -198 7841 7206 313 390 0 7 chr11 46236644 46236780 -104546773 + MIR3 SINE MIR 11 145 -63 1897 149 10 3 chr11 46236972 46237268 -104546285 + AluSx SINE Alu 2 299 -13 257 311 75 9 chr11 46237296 46237402 -104546151 - L2 LINE L2 -4 3268 3156 194 219 59 101 chr11 46237518 46237687 -104545866 - L2 LINE L2 -80 3233 3072 2006 139 0 29 chr11 46238010 46238326 -104545227 + AluJo SINE Alu 2 308 -4 532 295 33 15 chr11 46239173 46239378 -104544175 - MIR SINE MIR -55 207 2 * 963 267 95 62 chr11 46239378 46239607 -104543946 + L2 LINE L2 2470 2690 -623 1773 145 11 11 chr11 46239607 46239912 -104543641 + AluJb SINE Alu 1 305 0 963 267 95 62 chr11 46239912 46240486 -104543067 + L2 LINE L2 2690 3310 -3 2160 82 7 0 chr11 46241367 46241649 -104541904 + AluSx SINE Alu 1 284 -28 27 29 0 0 chr11 46241670 46241704 -104541849 + AT_rich Low_complexity Low_complexity 1 34 0 354 248 143 9 chr11 46242274 46242379 -104541174 - L2 LINE L2 -4 3309 3191 212 389 130 4 chr11 46242402 46242641 -104540912 + L2 LINE L2 2810 3078 -194 2234 85 10 7 chr11 46243643 46243950 -104539603 + AluY SINE Alu 1 308 -3 1750 147 19 25 chr11 46244091 46244405 -104539148 + AluJb SINE Alu 1 312 0 303 71 0 0 chr11 46247291 46247333 -104536220 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 1526 171 10 41 chr11 46247425 46247718 -104535835 + AluJo SINE Alu 1 284 -28 3155 132 42 19 chr11 46247818 46247898 -104535655 + MER41B LTR ERV1 94 171 -464 2241 98 3 29 chr11 46247898 46248205 -104535348 + AluSg SINE Alu 2 300 -10 3155 132 42 19 chr11 46248205 46248653 -104534900 + MER41B LTR ERV1 171 634 -1 2379 173 103 55 chr11 46248886 46249236 -104534317 - LTR9 LTR ERV1 -1 611 220 2396 96 3 3 chr11 46249236 46249549 -104534004 - AluSp SINE Alu 0 313 1 2379 173 103 55 chr11 46249549 46249781 -104533772 - LTR9 LTR ERV1 -392 220 1 281 245 28 47 chr11 46249819 46249923 -104533630 + MLT1J2 LTR MaLR 9 110 -340 635 221 8 0 chr11 46249923 46250050 -104533503 - MLT1A1 LTR MaLR 0 365 238 2303 126 62 72 chr11 46250056 46250613 -104532940 - LTR8A LTR ERV1 0 727 166 2251 151 17 50 chr11 46250613 46251030 -104532523 - MER57A LTR ERV1 0 403 1 2303 126 62 72 chr11 46251030 46251091 -104532462 - LTR8A LTR ERV1 -561 166 106 2219 109 0 3 chr11 46251091 46251384 -104532169 - AluSg SINE Alu -18 292 1 2303 126 62 72 chr11 46251384 46251409 -104532144 - LTR8A LTR ERV1 -621 106 1 1639 138 58 43 chr11 46251409 46251731 -104531822 - LTR59 LTR ERV1 -9 588 262 6044 87 11 44 chr11 46251731 46252588 -104530965 - MER4D LTR ERV1 0 872 45 3082 166 78 51 chr11 46252588 46253295 -104530258 + LTR8A LTR ERV1 2 727 0 6044 87 11 44 chr11 46253295 46253339 -104530214 - MER4D LTR ERV1 -827 45 1 1234 150 167 0 chr11 46253339 46253566 -104529987 - LTR59 LTR ERV1 -332 265 1 705 181 37 141 chr11 46253566 46253836 -104529717 - MLT1A1 LTR MaLR -123 242 1 340 274 86 98 chr11 46254969 46255054 -104528499 - L1MEd LINE L1 -3104 3025 2940 2121 128 14 0 chr11 46255054 46255351 -104528202 - AluSx SINE Alu -11 301 1 340 274 86 98 chr11 46255351 46255468 -104528085 - L1MEd LINE L1 -3189 2940 2823 2179 103 3 25 chr11 46255468 46255787 -104527766 - AluSq SINE Alu -1 312 1 340 274 86 98 chr11 46255787 46255908 -104527645 - L1MEd LINE L1 -3306 2823 2705 26 0 0 0 chr11 46255955 46255981 -104527572 + AT_rich Low_complexity Low_complexity 1 26 0 482 308 43 25 chr11 46255993 46256206 -104527347 + MLT1J2 LTR MaLR 1 257 -254 229 151 75 57 chr11 46256298 46256351 -104527202 + MLT1J LTR MaLR 394 447 -64 480 115 21 10 chr11 46256368 46256422 -104527131 + CT-rich Low_complexity Low_complexity 2 59 -39 2368 95 119 0 chr11 46256422 46256759 -104526794 + MER51B LTR ERV1 1 377 0 480 115 21 10 chr11 46256759 46256800 -104526753 + CT-rich Low_complexity Low_complexity 59 98 0 254 200 0 20 chr11 46257914 46257964 -104525589 + MLT1J LTR MaLR 1 49 -462 295 287 75 30 chr11 46258471 46258739 -104524814 - L1MEd LINE L1 -3680 2449 2170 354 232 0 0 chr11 46258761 46258830 -104524723 + L1M4 LINE L1 3458 3526 -2620 2200 100 23 0 chr11 46258833 46259132 -104524421 + AluY SINE Alu 1 306 -5 8317 189 20 31 chr11 46259174 46260814 -104522739 + L1M4 LINE L1 3536 5154 -1006 2334 118 0 0 chr11 46260814 46261120 -104522433 + AluSx SINE Alu 1 306 -6 8317 189 20 31 chr11 46261120 46261351 -104522202 + L1M4 LINE L1 5154 5386 -774 250 279 188 29 chr11 46261363 46261671 -104521882 - HAL1b LINE L1 -898 450 94 2499 86 0 3 chr11 46261838 46262152 -104521401 - AluSq SINE Alu 0 313 1 1556 123 9 14 chr11 46262678 46262898 -104520655 + MER20B DNA MER1_type 1 219 0 239 325 77 77 chr11 46263274 46263727 -104519826 - L1MEd LINE L1 -5569 550 98 1870 133 0 54 chr11 46263741 46264056 -104519497 + AluJb SINE Alu 2 299 -13 359 295 9 0 chr11 46264087 46264192 -104519361 + MIR SINE MIR 132 237 -25 820 169 7 7 chr11 46264708 46264850 -104518703 + AluJo SINE Alu 1 142 -170 1875 164 7 0 chr11 46264884 46265177 -104518376 - AluJb SINE Alu -17 295 1 1101 233 31 37 chr11 46265183 46265509 -104518044 - L1MC4 LINE L1 -758 7284 6961 292 269 30 0 chr11 46265538 46265605 -104517948 + L2 LINE L2 3208 3276 -37 192 294 24 24 chr11 46265627 46265712 -104517841 + MIR SINE MIR 132 216 -46 1542 127 0 9 chr11 46265724 46265944 -104517609 + AluSx SINE Alu 1 218 -94 210 71 0 0 chr11 46265960 46265988 -104517565 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1106 221 52 12 chr11 46265999 46266248 -104517305 - MIR SINE MIR -2 260 2 384 344 80 40 chr11 46266639 46266790 -104516763 + L2 LINE L2 3116 3272 0 210 244 39 51 chr11 46266884 46266962 -104516591 - MIR SINE MIR -83 125 49 761 179 0 0 chr11 46267536 46267653 -104515900 + FLAM_C SINE Alu 1 117 -16 273 277 81 68 chr11 46267688 46267836 -104515717 + MER5A DNA MER1_type 40 189 0 405 0 0 0 chr11 46268086 46268131 -104515422 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 484 238 10 10 chr11 46268679 46268780 -104514773 + L2 LINE L2 3210 3310 -3 1060 210 88 48 chr11 46268905 46269200 -104514353 - MLT1C LTR MaLR -102 365 59 1409 207 87 5 chr11 46269262 46269659 -104513894 + MLT1F LTR MaLR 9 531 -11 627 235 45 35 chr11 46269670 46269870 -104513683 + MLT1F-int LTR MaLR 1 202 -1169 241 215 31 15 chr11 46269907 46269972 -104513581 + MLT1F-int LTR MaLR 536 601 -770 918 287 48 106 chr11 46270214 46270584 -104512969 + MLT1F-int LTR MaLR 699 1008 -363 198 0 0 0 chr11 46270584 46270606 -104512947 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 918 287 48 106 chr11 46270606 46270950 -104512603 + MLT1F-int LTR MaLR 1008 1371 0 285 309 12 0 chr11 46270950 46271031 -104512522 + MLT1F LTR MaLR 1 82 -460 794 260 130 23 chr11 46271139 46271523 -104512030 - MLT1J1 LTR MaLR -1 445 21 2511 165 37 51 chr11 46271856 46272364 -104511189 + MLT1D LTR MaLR 2 502 -3 660 162 9 9 chr11 46272446 46272557 -104510996 + MIR SINE MIR 34 144 -118 2303 108 3 3 chr11 46272671 46272977 -104510576 - AluSx SINE Alu -6 306 1 306 0 0 0 chr11 46273451 46273485 -104510068 + (T)n Simple_repeat Simple_repeat 1 34 0 1268 155 52 5 chr11 46273816 46274029 -104509524 + AluJo SINE Alu 87 309 -3 355 284 84 67 chr11 46274318 46274345 -104509208 - L1ME4a LINE L1 -5 6116 6091 1514 114 0 0 chr11 46274345 46274547 -104509006 + AluSg/x SINE Alu 109 310 0 355 284 84 67 chr11 46274547 46274949 -104508604 - L1ME4a LINE L1 -30 6091 5680 310 297 86 54 chr11 46274985 46275387 -104508166 - L1ME4a LINE L1 -748 5398 5197 551 267 91 21 chr11 46275431 46275618 -104507935 - MIR SINE MIR -18 244 45 915 263 86 14 chr11 46275659 46275765 -104507788 - LTR16C LTR ERVL -8 483 386 243 0 0 0 chr11 46275765 46275792 -104507761 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 915 263 86 14 chr11 46275792 46276046 -104507507 - LTR16C LTR ERVL -105 386 97 2046 88 15 0 chr11 46276899 46277161 -104506392 - AluSx SINE Alu -12 300 35 243 289 40 0 chr11 46277358 46277434 -104506119 + MIR SINE MIR 33 111 -97 292 209 79 22 chr11 46277435 46277574 -104505979 - LTR16A LTR ERVL -3 447 301 241 200 22 0 chr11 46278028 46278073 -104505480 - L2 LINE L2 -4 3309 3264 331 329 56 37 chr11 46278440 46278501 -104505052 + MIR SINE MIR 99 157 -105 2264 108 0 3 chr11 46278501 46278798 -104504755 + AluSx SINE Alu 1 296 -16 331 329 56 37 chr11 46278798 46278897 -104504656 + MIR SINE MIR 157 262 0 275 306 51 20 chr11 46280237 46280335 -104503218 - L2 LINE L2 -46 3226 3126 301 137 20 0 chr11 46280389 46280440 -104503113 + L2 LINE L2 2283 2334 -980 324 85 83 12 chr11 46280440 46280669 -104502884 + AluSq SINE Alu 1 320 0 752 278 140 52 chr11 46280674 46281561 -104501992 + L2 LINE L2 2325 3311 -2 224 200 0 0 chr11 46281835 46281875 -104501678 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 448 290 0 62 chr11 46281899 46282061 -104501492 + MIR3 SINE MIR 30 181 -27 693 162 111 0 chr11 46283484 46283601 -104499952 - FLAM_A SINE Alu 0 133 4 521 170 62 36 chr11 46283842 46283954 -104499599 + MIR3 SINE MIR 49 163 -45 198 288 14 0 chr11 46284648 46284721 -104498832 + L2 LINE L2 2423 2496 -818 730 266 56 47 chr11 46284723 46284914 -104498639 + MIR SINE MIR 28 223 -39 1756 168 53 34 chr11 46284914 46285271 -104498282 - MLT1A1 LTR MaLR 0 365 2 730 266 56 47 chr11 46285271 46285312 -104498241 + MIR SINE MIR 223 262 0 2087 139 3 0 chr11 46285465 46285759 -104497794 + AluSx SINE Alu 7 301 -11 555 188 134 0 chr11 46285799 46285911 -104497642 - L2 LINE L2 0 3313 3187 330 306 90 15 chr11 46285883 46286017 -104497536 + MIR SINE MIR 27 170 -92 * 2200 125 3 0 chr11 46286181 46286484 -104497069 + AluSx SINE Alu 1 304 -8 192 152 0 0 chr11 46286674 46286707 -104496846 + T-rich Low_complexity Low_complexity 1 33 0 2140 111 23 7 chr11 46286709 46287016 -104496537 - AluJo SINE Alu 0 312 1 217 296 99 0 chr11 46287183 46287254 -104496299 + L2 LINE L2 3170 3247 -25 587 272 89 29 chr11 46287431 46287747 -104495806 - MLT1J2 LTR MaLR -1 445 104 368 224 37 19 chr11 46288461 46288568 -104494985 + MER20B DNA MER1_type 30 138 -645 544 179 86 8 chr11 46288646 46288763 -104494790 - MER5A DNA MER1_type -63 126 1 1408 254 61 30 chr11 46288771 46289176 -104494377 + MER20B DNA MER1_type 227 618 -165 254 73 24 0 chr11 46289176 46289217 -104494336 + (TG)n Simple_repeat Simple_repeat 1 42 0 1408 254 61 30 chr11 46289217 46289296 -104494257 + MER20B DNA MER1_type 618 693 -90 2016 126 3 7 chr11 46289296 46289603 -104493950 - AluJb SINE Alu 0 306 1 1408 254 61 30 chr11 46289603 46289656 -104493897 + MER20B DNA MER1_type 693 783 0 301 311 19 10 chr11 46289878 46289981 -104493572 - MIR SINE MIR -130 132 29 292 282 13 0 chr11 46290082 46290160 -104493393 - L2 LINE L2 -56 3257 3179 445 330 214 7 chr11 46290385 46290506 -104493047 - L2 LINE L2 -417 2897 2802 1711 197 89 21 chr11 46290506 46290943 -104492610 + MLT1C LTR MaLR 1 467 0 445 330 214 7 chr11 46290943 46291373 -104492180 - L2 LINE L2 -512 2802 2232 2042 146 17 0 chr11 46291475 46291777 -104491776 - AluSx SINE Alu -5 307 1 543 194 8 47 chr11 46291778 46291907 -104491646 + MER5B DNA MER1_type 5 128 -50 283 179 189 28 chr11 46291934 46292040 -104491513 - HAL1 LINE L1 -1747 760 638 866 255 20 8 chr11 46292046 46292293 -104491260 - HAL1 LINE L1 -2232 275 26 225 224 52 0 chr11 46292360 46292418 -104491135 - MLT1L LTR MaLR -3 612 552 809 262 53 12 chr11 46292652 46292896 -104490657 + MIR SINE MIR 2 255 -7 325 112 31 41 chr11 46293325 46293423 -104490130 + (TTCA)n Simple_repeat Simple_repeat 3 99 0 1246 182 5 5 chr11 46293434 46293643 -104489910 - AluJb SINE Alu -17 295 87 631 226 136 35 chr11 46293649 46293848 -104489705 + MIR SINE MIR 29 247 -15 297 269 0 0 chr11 46293846 46293913 -104489640 - MIR SINE MIR 0 262 196 * 1400 211 109 24 chr11 46293920 46294432 -104489121 - MLT1E LTR MaLR 0 593 2 581 144 215 67 chr11 46294471 46294666 -104488887 - MER2 DNA MER2_type -1 344 121 724 161 0 8 chr11 46294667 46294785 -104488768 + AluJb SINE Alu 2 118 -194 2447 94 3 0 chr11 46294785 46295093 -104488460 - AluSx SINE Alu -3 309 1 617 130 0 0 chr11 46295131 46295223 -104488330 + AluSg/x SINE Alu 217 308 -2 356 211 0 67 chr11 46295328 46295447 -104488106 + AluSg/x SINE Alu 217 300 0 * 807 159 15 0 chr11 46295444 46295576 -104487977 - MER2 DNA MER2_type -210 135 2 385 263 254 0 chr11 46295586 46295700 -104487853 - MIR SINE MIR -118 144 2 422 338 71 7 chr11 46295740 46295894 -104487659 - L2 LINE L2 -18 3254 3091 495 0 0 0 chr11 46296445 46296500 -104487053 + (TG)n Simple_repeat Simple_repeat 2 56 0 480 242 47 47 chr11 46297375 46297524 -104486029 + MIR SINE MIR 80 228 -34 840 190 0 60 chr11 46297950 46298040 -104485513 - L1MB3 LINE L1 -2 6181 6108 2130 115 35 0 chr11 46298040 46298326 -104485227 + AluSx SINE Alu 1 296 -16 840 190 0 60 chr11 46298326 46298435 -104485118 - L1MB3 LINE L1 -75 6108 5994 216 0 0 0 chr11 46299145 46299169 -104484384 + (AGCTG)n Simple_repeat Simple_repeat 2 25 0 208 317 0 0 chr11 46299277 46299337 -104484216 - MIR SINE MIR -79 129 70 474 250 175 12 chr11 46299392 46299552 -104484001 + MER5A DNA MER1_type 4 189 0 244 260 14 14 chr11 46300311 46300384 -104483169 - MER81 DNA DNA -7 107 35 566 228 39 44 chr11 46300421 46300601 -104482952 - MIR SINE MIR -57 205 27 335 300 124 43 chr11 46301056 46301169 -104482384 + MIR SINE MIR 36 138 -124 2272 123 3 0 chr11 46301169 46301470 -104482083 - AluSx SINE Alu -8 304 3 335 300 124 43 chr11 46301470 46301566 -104481987 + MIR SINE MIR 138 262 0 444 274 13 93 chr11 46302295 46302521 -104481032 + MIR SINE MIR 54 261 -1 208 240 192 29 chr11 46303112 46303216 -104480337 + MIR3 SINE MIR 39 159 -49 520 293 61 0 chr11 46303217 46303381 -104480172 + MIR SINE MIR 1 174 -88 479 290 148 0 chr11 46303410 46303572 -104479981 - MIR SINE MIR -11 251 66 1807 157 0 4 chr11 46303572 46303852 -104479701 + AluJb SINE Alu 21 299 -13 2099 145 3 0 chr11 46304151 46304455 -104479098 + AluJb SINE Alu 1 305 -7 2357 86 7 0 chr11 46304726 46305016 -104478537 + AluSp SINE Alu 1 292 -21 374 218 64 0 chr11 46305024 46305102 -104478451 - L2 LINE L2 -1 3312 3230 200 347 8 40 chr11 46305786 46305910 -104477643 + L2 LINE L2 2521 2640 -674 346 311 44 50 chr11 46305964 46306144 -104477409 + L2 LINE L2 3120 3298 -15 243 234 0 0 chr11 46306211 46306258 -104477295 + L2 LINE L2 3267 3313 0 192 163 0 0 chr11 46306437 46306480 -104477073 + (TG)n Simple_repeat Simple_repeat 1 43 0 850 264 25 29 chr11 46306876 46306957 -104476596 + L1MC4a LINE L1 5482 5562 -559 2344 101 0 0 chr11 46306957 46307254 -104476299 - AluSq SINE Alu -16 297 1 850 264 25 29 chr11 46307254 46307503 -104476050 + L1MC4a LINE L1 5562 5806 -315 256 292 14 0 chr11 46307526 46307598 -104475955 + L2 LINE L2 2026 2098 -1216 365 161 0 0 chr11 46307598 46307660 -104475893 + MER20 DNA MER1_type 158 219 0 259 274 0 0 chr11 46307662 46307766 -104475787 + L2 LINE L2 3215 3312 -1 305 266 166 0 chr11 46307768 46307907 -104475646 + L1MC4a LINE L1 5813 5974 -1834 2037 119 0 56 chr11 46307941 46308260 -104475293 - AluSx SINE Alu -11 301 1 191 360 16 40 chr11 46308601 46308726 -104474827 - MIR SINE MIR -68 194 73 1364 204 49 120 chr11 46308784 46309358 -104474195 - MLT1F LTR MaLR -6 536 4 334 281 94 106 chr11 46309816 46310051 -104473502 - MIR SINE MIR -11 251 20 494 277 178 15 chr11 46310387 46310589 -104472964 + MIR SINE MIR 2 236 -26 316 234 198 27 chr11 46311503 46311614 -104471939 + MIR3 SINE MIR 71 200 -8 466 296 29 71 chr11 46311720 46311960 -104471593 - L2 LINE L2 -91 3181 2952 439 225 124 39 chr11 46311973 46312102 -104471451 + MER91C DNA MER1_type 1 140 0 447 278 77 18 chr11 46312273 46312442 -104471111 + MIR SINE MIR 34 212 -50 287 54 54 36 chr11 46313311 46313367 -104470186 - L1MB7 LINE L1 0 6184 6128 732 197 0 0 chr11 46313367 46313494 -104470059 + FLAM_C SINE Alu 17 143 0 4046 170 60 8 chr11 46313498 46314838 -104468715 - L1MB7 LINE L1 -43 6639 5231 1856 206 39 17 chr11 46314831 46315296 -104468257 - L1MB7 LINE L1 -1833 4811 4337 * 6021 153 12 3 chr11 46315298 46317299 -104466254 - L1PB1 LINE L1 0 6151 4134 5925 227 53 29 chr11 46317266 46317701 -104465852 - L1MB7 LINE L1 -2259 4385 3962 * 1917 161 3 25 chr11 46317701 46318018 -104465535 - AluJb SINE Alu -2 310 1 5925 227 53 29 chr11 46318018 46318639 -104464914 - L1MB7 LINE L1 -2682 3962 3358 2417 192 72 0 chr11 46318639 46319077 -104464476 + MLT2B1 LTR ERVL 1 406 -114 258 32 0 0 chr11 46319077 46319108 -104464445 + (TC)n Simple_repeat Simple_repeat 2 32 0 * 369 0 0 0 chr11 46319107 46319148 -104464405 + (TG)n Simple_repeat Simple_repeat 2 42 0 2417 192 72 0 chr11 46319108 46319194 -104464359 + MLT2B1 LTR ERVL 406 520 0 5925 227 53 29 chr11 46319194 46321398 -104462155 - L1MB7 LINE L1 -3286 3358 916 2368 92 7 0 chr11 46321398 46321691 -104461862 - AluSp SINE Alu -18 295 1 5925 227 53 29 chr11 46321691 46322087 -104461466 - L1MB7 LINE L1 -5728 916 531 272 259 84 53 chr11 46322087 46322218 -104461335 + MIR SINE MIR 122 256 -6 208 319 176 22 chr11 46322277 46322368 -104461185 - MIR SINE MIR -87 121 17 1677 201 7 10 chr11 46322546 46322839 -104460714 + AluJo SINE Alu 1 292 -20 843 190 147 11 chr11 46323012 46323196 -104460357 + MER3 DNA MER1_type 1 209 0 328 229 42 147 chr11 46323272 46323512 -104460041 + MIR SINE MIR 4 212 -41 971 251 171 16 chr11 46323626 46324102 -104459451 + L2 LINE L2 2510 3053 -260 349 224 13 13 chr11 46324105 46324181 -104459372 + L2 LINE L2 3237 3312 -1 326 248 44 97 chr11 46324246 46324359 -104459194 + MIR3 SINE MIR 77 183 -25 594 0 0 0 chr11 46324633 46324699 -104458854 + (TTTTA)n Simple_repeat Simple_repeat 5 70 0 243 0 0 0 chr11 46324721 46324748 -104458805 + (T)n Simple_repeat Simple_repeat 1 27 0 397 320 14 14 chr11 46325531 46325678 -104457875 - MIR SINE MIR -69 193 47 574 284 49 0 chr11 46325714 46325876 -104457677 + MIR SINE MIR 50 219 -43 1292 270 47 7 chr11 46326183 46326591 -104456962 - LTR16B LTR ERVL -40 424 1 305 257 19 38 chr11 46326593 46326698 -104456855 + MIR SINE MIR 71 173 -89 498 227 98 10 chr11 46326699 46326903 -104456650 - MLT1H1 LTR MaLR 0 590 341 314 173 14 122 chr11 46327864 46327974 -104455579 - MIR SINE MIR -62 146 52 201 261 98 65 chr11 46328899 46328991 -104454562 + MER5A DNA MER1_type 62 163 -22 2507 101 27 36 chr11 46329069 46329434 -104454119 - THE1B LTR MaLR -2 362 1 192 238 0 0 chr11 46329575 46329617 -104453936 + L2 LINE L2 2741 2782 -532 1095 250 148 21 chr11 46329647 46330019 -104453534 + L2 LINE L2 2895 3313 0 2277 129 0 0 chr11 46330319 46330629 -104452924 + AluSx SINE Alu 1 310 -2 370 248 108 51 chr11 46330959 46331116 -104452437 + MIR SINE MIR 17 182 -80 2103 140 0 0 chr11 46331165 46331465 -104452088 + AluSx SINE Alu 2 301 -11 280 228 109 40 chr11 46331910 46332011 -104451542 + MIR SINE MIR 48 155 -107 208 321 83 18 chr11 46332412 46332521 -104451032 - L2 LINE L2 -8 3305 3190 423 38 0 0 chr11 46332521 46332574 -104450979 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 1150 274 19 61 chr11 46332585 46333012 -104450541 - L2 LINE L2 0 3313 2905 466 278 30 77 chr11 46333065 46333377 -104450176 - L2 LINE L2 -206 3066 2777 190 317 0 92 chr11 46333542 46333662 -104449891 - L2 LINE L2 -520 2794 2686 * 229 348 43 70 chr11 46333636 46333751 -104449802 + L2 LINE L2 3183 3294 -19 2537 96 0 6 chr11 46333974 46334327 -104449226 + L1PB1 LINE L1 5800 6150 -1 318 267 11 33 chr11 46334333 46334423 -104449130 + MER5A DNA MER1_type 63 150 -39 337 294 65 23 chr11 46334578 46334774 -104448779 - MIR SINE MIR -43 219 19 285 287 233 7 chr11 46334895 46335045 -104448508 + MER5A DNA MER1_type 2 185 -4 589 345 54 5 chr11 46335552 46335775 -104447778 + MIR SINE MIR 19 252 -10 203 146 164 18 chr11 46335914 46335969 -104447584 + MIR SINE MIR 129 191 -71 334 289 21 21 chr11 46336031 46336128 -104447425 - L1MEd LINE L1 -5097 1022 926 278 140 80 0 chr11 46336197 46336247 -104447306 - MER58A DNA MER1_type -17 90 37 1133 318 140 33 chr11 46336249 46337154 -104446399 - L1 LINE L1 -1845 4301 3287 686 189 47 0 chr11 46337154 46337281 -104446272 - FLAM_C SINE Alu 0 133 1 1133 318 140 33 chr11 46337281 46337335 -104446218 - L1 LINE L1 -2859 3287 3240 1949 160 0 7 chr11 46337463 46337756 -104445797 + AluJb SINE Alu 1 291 -21 398 290 107 0 chr11 46337816 46337985 -104445568 - L1ME1 LINE L1 -19 6147 5961 466 247 152 4 chr11 46338023 46338266 -104445287 - L1MEc LINE L1 -4785 1525 1247 337 291 159 66 chr11 46338290 46338548 -104445005 - L1MEc LINE L1 -4942 1177 896 259 219 186 1 chr11 46338923 46339001 -104444552 + MIR SINE MIR 43 132 -76 386 327 9 0 chr11 46339001 46339108 -104444445 - MIR SINE MIR -56 152 45 1961 148 0 7 chr11 46339826 46340116 -104443437 + AluJb SINE Alu 7 294 -18 352 234 0 0 chr11 46341617 46341714 -104441839 + AluJ/FRAM SINE Alu 219 315 0 732 210 14 0 chr11 46341728 46341866 -104441687 + MER5A DNA MER1_type 47 186 -3 1103 173 9 62 chr11 46342045 46342270 -104441283 - MER58A DNA MER1_type 0 224 12 233 319 156 22 chr11 46343259 46343394 -104440159 - MIR SINE MIR -31 231 79 212 301 89 8 chr11 46343646 46343769 -104439784 - L2 LINE L2 -310 2962 2830 2265 129 0 0 chr11 46343802 46344111 -104439442 + AluJb SINE Alu 1 309 -3 182 229 42 21 chr11 46344580 46344628 -104438925 + L3b LINE CR1 1372 1420 -163 2446 86 0 0 chr11 46345503 46345806 -104437747 - AluY SINE Alu -8 303 1 236 258 177 8 chr11 46345807 46345931 -104437622 + MIR3 SINE MIR 45 189 -19 2016 143 3 0 chr11 46348246 46348532 -104435021 + AluSx SINE Alu 1 287 -25 275 236 118 112 chr11 46349027 46349113 -104434440 + MIR SINE MIR 49 133 -129 2350 117 0 0 chr11 46349113 46349421 -104434132 - AluSg SINE Alu -2 308 1 275 236 118 112 chr11 46349421 46349512 -104434041 + MIR SINE MIR 133 227 -35 185 351 0 0 chr11 46350321 46350398 -104433155 - L2 LINE L2 -299 2973 2897 2158 120 7 0 chr11 46351217 46351517 -104432036 + AluSq SINE Alu 1 302 -11 510 232 176 0 chr11 46352120 46352245 -104431308 - MER5B DNA MER1_type -3 175 29 1964 141 0 0 chr11 46352555 46352832 -104430721 + AluSx SINE Alu 2 278 -34 190 29 57 29 chr11 46352851 46352886 -104430667 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 235 338 19 94 chr11 46353537 46353624 -104429929 - L2 LINE L2 -4 3268 3197 2360 95 7 3 chr11 46353624 46353929 -104429624 + AluSg SINE Alu 1 306 -4 235 338 19 94 chr11 46353929 46354001 -104429552 - L2 LINE L2 -75 3197 3121 189 308 0 0 chr11 46353995 46354047 -104429506 - L2 LINE L2 -500 2814 2763 * 334 234 13 13 chr11 46354063 46354140 -104429413 - L2 LINE L2 -3 3310 3234 1841 158 31 0 chr11 46355274 46355565 -104427988 + AluJo SINE Alu 2 301 -11 982 181 275 3 chr11 46355579 46355866 -104427687 - MLT1A1 LTR MaLR 0 365 1 2005 112 14 0 chr11 46356126 46356434 -104427119 - AluSx SINE Alu 0 312 1 1722 248 93 37 chr11 46356451 46357254 -104426299 - L1M4 LINE L1 -2013 4133 3286 1711 130 12 23 chr11 46357262 46357601 -104425952 + MER61B LTR ERV1 1 425 0 2861 232 85 15 chr11 46357609 46358653 -104424900 - L1M4 LINE L1 -2889 3257 2141 335 263 30 20 chr11 46358801 46358900 -104424653 + L2 LINE L2 3172 3271 -1 297 287 0 50 chr11 46358924 46359025 -104424528 - MIR SINE MIR -59 149 54 348 24 0 0 chr11 46359230 46359271 -104424282 + (TG)n Simple_repeat Simple_repeat 2 42 0 1738 167 9 41 chr11 46359273 46359461 -104424092 - AluJo SINE Alu -4 308 133 2320 103 3 0 chr11 46359461 46359763 -104423790 + AluSg SINE Alu 1 303 -7 1738 167 9 41 chr11 46359763 46359892 -104423661 - AluJo SINE Alu -179 133 1 2977 136 75 22 chr11 46359918 46360455 -104423098 + MER34B LTR ERV1 1 565 0 454 233 37 61 chr11 46361529 46361692 -104421861 - MIR SINE MIR -1 261 103 182 180 330 10 chr11 46361811 46361911 -104421642 + L2 LINE L2 33 164 -3150 193 220 0 60 chr11 46362076 46362126 -104421427 + L2 LINE L2 3258 3304 -9 353 317 97 70 chr11 46362860 46362981 -104420572 + MIR SINE MIR 30 161 -101 1877 179 0 22 chr11 46362981 46363299 -104420254 + AluJb SINE Alu 1 311 -1 353 317 97 70 chr11 46363299 46363404 -104420149 + MIR SINE MIR 161 262 0 793 273 16 24 chr11 46363507 46363760 -104419793 - L2 LINE L2 -67 3246 2996 1066 203 115 119 chr11 46363761 46363876 -104419677 - MLT1F1 LTR MaLR 0 567 453 2301 98 20 0 chr11 46363876 46364182 -104419371 - AluSx SINE Alu 0 312 1 1066 203 115 119 chr11 46364182 46364563 -104418990 - MLT1F1 LTR MaLR -114 453 73 1250 299 51 28 chr11 46364599 46365099 -104418454 - L2 LINE L2 -313 3000 2490 191 295 205 9 chr11 46365468 46365580 -104417973 - L2 LINE L2 0 3313 3180 374 255 39 0 chr11 46366082 46366184 -104417369 + MIR SINE MIR 30 135 -73 1820 208 35 7 chr11 46366251 46366675 -104416878 + MER63B DNA MER1_type 1 436 0 2287 93 0 0 chr11 46366814 46367121 -104416432 - AluSg SINE Alu 0 307 1 1371 140 108 7 chr11 46367187 46367465 -104416088 - MER33 DNA MER1_type -15 309 4 657 250 29 0 chr11 46367834 46367974 -104415579 + MIR3 SINE MIR 2 145 -63 940 199 16 0 chr11 46368199 46368390 -104415163 + MER20 DNA MER1_type 18 211 -8 207 235 78 0 chr11 46368619 46368670 -104414883 - MIR SINE MIR -2 260 206 432 300 112 60 chr11 46368723 46368956 -104414597 + MIR SINE MIR 7 251 -11 2238 122 3 0 chr11 46369401 46369782 -104413771 - AluSx SINE Alu 0 382 1 562 298 20 28 chr11 46370605 46370860 -104412693 - MLT1L LTR MaLR -362 253 1 802 229 60 5 chr11 46370950 46371151 -104412402 - MIR SINE MIR 0 262 51 473 304 6 25 chr11 46371221 46371379 -104412174 + MIR SINE MIR 106 260 -2 2796 93 3 3 chr11 46371396 46371760 -104411793 - THE1B LTR MaLR 0 364 1 262 346 59 33 chr11 46372778 46372931 -104410622 - MER5B DNA MER1_type -4 174 18 332 256 78 0 chr11 46373632 46373722 -104409831 - MIR SINE MIR 0 262 166 191 217 261 14 chr11 46373807 46373876 -104409677 - MIR SINE MIR -77 185 100 225 159 0 0 chr11 46374581 46374625 -104408928 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 871 161 0 0 chr11 46374766 46374896 -104408657 + FLAM_C SINE Alu 6 135 -8 286 259 56 84 chr11 46374984 46375127 -104408426 - MIR SINE MIR -48 214 76 * 567 356 26 33 chr11 46375122 46375428 -104408125 - L2 LINE L2 -2 3311 3008 490 174 0 12 chr11 46375429 46375515 -104408038 - MER58A DNA MER1_type -22 85 1 609 244 124 45 chr11 46376070 46376312 -104407241 + MIR SINE MIR 1 261 -1 836 247 0 0 chr11 46376347 46376509 -104407044 + AluJb SINE Alu 137 298 -14 276 205 60 60 chr11 46376655 46376738 -104406815 - MIR SINE MIR -62 200 118 2270 239 61 25 chr11 46376741 46377394 -104406159 + L1ME1 LINE L1 5437 6113 -53 293 237 48 26 chr11 46377417 46377512 -104406041 - MIR SINE MIR -81 127 31 2306 105 7 0 chr11 46379388 46379693 -104403860 - AluSx SINE Alu -5 307 1 1160 272 96 51 chr11 46379699 46379809 -104403744 - L1MEd LINE L1 -4641 1669 1565 2050 132 7 0 chr11 46379809 46380116 -104403437 - AluSx SINE Alu 0 309 1 1160 272 96 51 chr11 46380116 46380726 -104402827 - L1MEd LINE L1 -4745 1565 984 1947 146 0 30 chr11 46380726 46381027 -104402526 - AluSx SINE Alu -20 292 1 1160 272 96 51 chr11 46381027 46381541 -104402012 - L1MEd LINE L1 -5326 984 329 1917 128 3 40 chr11 46381728 46381901 -104401652 - AluSq SINE Alu 0 306 148 1838 86 0 16 chr11 46381901 46382144 -104401409 - AluY SINE Alu -17 294 56 1917 128 3 40 chr11 46382144 46382287 -104401266 - AluSq SINE Alu -158 148 1 688 250 149 10 chr11 46382466 46382717 -104400836 - L1ME LINE L1 -431 5731 5434 2381 108 0 0 chr11 46382718 46383024 -104400529 + AluSx SINE Alu 1 306 -6 4134 178 27 27 chr11 46383049 46383502 -104400051 - L1MB2 LINE L1 0 6171 5719 3093 111 39 0 chr11 46383502 46383970 -104399583 + LTR19A LTR ERV1 1 486 0 4134 178 27 27 chr11 46383970 46384192 -104399361 - L1MB2 LINE L1 -452 5719 5492 1869 139 4 0 chr11 46384192 46384480 -104399073 - AluSx SINE Alu 0 313 25 4134 178 27 27 chr11 46384480 46384654 -104398899 - L1MB2 LINE L1 -678 5493 5320 457 192 113 26 chr11 46384625 46384816 -104398737 - L1ME LINE L1 -718 5446 5241 * 2312 107 0 7 chr11 46384969 46385269 -104398284 - AluSx SINE Alu -14 298 1 232 309 59 26 chr11 46385382 46385534 -104398019 - L1MDa LINE L1 -4501 2039 1883 1637 251 134 16 chr11 46385644 46386285 -104397268 - L1MDa LINE L1 -4903 1627 911 1608 199 46 25 chr11 46386302 46386668 -104396885 + MLT1A2 LTR MaLR 1 374 0 389 224 6 0 chr11 46436726 46436887 -104346666 + (CACAA)n Simple_repeat Simple_repeat 4 165 0 203 157 20 0 chr11 46436900 46436951 -104346602 + (CAACC)n Simple_repeat Simple_repeat 3 54 0 974 199 16 21 chr11 46437005 46437196 -104346357 - AluJo SINE Alu -4 308 119 1677 174 3 16 chr11 46437200 46437504 -104346049 - AluJo SINE Alu -12 300 1 311 289 82 10 chr11 46437555 46437652 -104345901 + L2 LINE L2 3136 3239 -33 180 0 0 0 chr11 46437963 46437983 -104345570 + (T)n Simple_repeat Simple_repeat 1 20 0 1972 140 10 13 chr11 46438340 46438648 -104344905 - AluSx SINE Alu -5 307 1 2255 91 7 0 chr11 46438657 46438942 -104344611 - AluSx SINE Alu -19 293 7 202 216 0 0 chr11 46439443 46439480 -104344073 + (CA)n Simple_repeat Simple_repeat 1 37 0 466 270 90 17 chr11 46439699 46439877 -104343676 - MIR3 SINE MIR 0 208 18 731 174 149 31 chr11 46442529 46442690 -104340863 - MER5A DNA MER1_type 0 189 10 2312 306 78 63 chr11 46444620 46445256 -104338297 - HAL1 LINE L1 -274 2233 1608 2310 85 3 0 chr11 46445256 46445550 -104338003 + AluSx SINE Alu 1 295 -17 2312 306 78 63 chr11 46445550 46446699 -104336854 - HAL1 LINE L1 -899 1608 421 2602 181 109 76 chr11 46447015 46447828 -104335725 - L1MC4 LINE L1 -57 7985 7146 760 254 74 63 chr11 46447894 46448513 -104335040 - L1MEd LINE L1 -4890 1229 604 2362 53 0 0 chr11 46448906 46449210 -104334343 + AluY SINE Alu 1 304 0 904 281 44 51 chr11 46449423 46449857 -104333696 - L1MEd LINE L1 -5647 472 42 200 208 0 39 chr11 46450485 46450562 -104332991 + T-rich Low_complexity Low_complexity 1 74 0 273 262 56 65 chr11 46451452 46451559 -104331994 + MIR SINE MIR 81 186 -76 477 168 0 0 chr11 46451685 46451792 -104331761 + CT-rich Low_complexity Low_complexity 2 108 0 709 169 8 0 chr11 46451792 46451910 -104331643 - FRAM SINE Alu -64 112 1 1116 186 9 41 chr11 46451927 46452148 -104331405 - AluJo SINE Alu -59 253 40 288 282 141 13 chr11 46452152 46452301 -104331252 + MIR SINE MIR 94 261 -1 231 193 121 60 chr11 46452419 46452502 -104331051 - MIR SINE MIR -61 201 114 219 353 29 0 chr11 46452517 46452585 -104330968 - MIR3 SINE MIR -47 161 92 245 245 56 70 chr11 46452729 46452872 -104330681 + L1MEd LINE L1 300 440 -5976 237 338 0 0 chr11 46453241 46453315 -104330238 + L1MEd LINE L1 897 970 -5446 585 250 57 26 chr11 46453433 46453754 -104329799 + L1MEd LINE L1 1236 1554 -4862 2268 128 123 5 chr11 46454073 46454456 -104329097 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr11 46456727 46456749 -104326804 + AT_rich Low_complexity Low_complexity 1 22 0 362 351 105 53 chr11 46456851 46457193 -104326360 + L2 LINE L2 2913 3272 0 565 271 90 0 chr11 46457319 46457485 -104326068 - MIR SINE MIR -32 230 50 530 282 82 24 chr11 46458075 46458281 -104325272 - MIR SINE MIR -13 249 32 862 275 50 5 chr11 46459236 46459454 -104324099 + MIR SINE MIR 32 259 -3 2365 89 10 0 chr11 46459853 46460155 -104323398 + AluSp SINE Alu 1 305 -8 490 138 0 0 chr11 46460536 46460623 -104322930 + L1MB3 LINE L1 6090 6176 -7 358 167 77 0 chr11 46460641 46460719 -104322834 + L1MB8 LINE L1 6093 6176 -2 556 212 69 84 chr11 46460942 46461277 -104322276 - HAL1 LINE L1 -1070 1437 1108 606 256 45 56 chr11 46461334 46461689 -104321864 - HAL1 LINE L1 -1412 1095 745 967 262 107 52 chr11 46461711 46462302 -104321251 - HAL1 LINE L1 -1884 623 1 25 0 0 0 chr11 46464841 46464866 -104318687 + AT_rich Low_complexity Low_complexity 1 25 0 341 246 138 23 chr11 46466099 46466229 -104317324 - MIR SINE MIR -37 225 81 557 286 111 9 chr11 46467373 46467590 -104315963 - MIR SINE MIR -4 258 20 417 363 51 34 chr11 46467653 46467887 -104315666 - L3 LINE CR1 -91 1486 1249 568 225 127 105 chr11 46467893 46468420 -104315133 - LTR41 LTR ERVL -6 767 218 225 0 0 0 chr11 46468420 46468445 -104315108 + (CCTG)n Simple_repeat Simple_repeat 4 28 0 568 225 127 105 chr11 46468445 46468668 -104314885 - LTR41 LTR ERVL -555 218 1 212 346 24 39 chr11 46468668 46468795 -104314758 - L3 LINE CR1 -376 1201 1077 923 243 25 13 chr11 46468806 46469045 -104314508 + Charlie1 DNA MER1_type 1 242 -2519 591 175 0 106 chr11 46469025 46469185 -104314368 + Charlie1 DNA MER1_type 2619 2761 0 * 1867 152 42 27 chr11 46469233 46469563 -104313990 + MER1B DNA MER1_type 3 337 0 557 266 130 31 chr11 46469760 46469952 -104313601 + MIR SINE MIR 38 248 -14 183 274 233 14 chr11 46469990 46470063 -104313490 - MIR SINE MIR -96 112 24 782 217 54 20 chr11 46470255 46470458 -104313095 + MER69 DNA AcHobo 41 250 -2276 223 93 47 0 chr11 46471248 46471291 -104312262 + (TATG)n Simple_repeat Simple_repeat 4 48 0 194 224 61 20 chr11 46473073 46473122 -104310431 + MIR3 SINE MIR 137 187 -21 397 322 105 1 chr11 46473352 46473551 -104310002 - MIR SINE MIR -25 237 18 439 326 155 0 chr11 46473697 46473878 -104309675 + MIR SINE MIR 31 239 -23 618 373 39 11 chr11 46474392 46474671 -104308882 + L2 LINE L2 2986 3272 0 1999 219 25 44 chr11 46474758 46475371 -104308182 + L1ME1 LINE L1 5555 6155 -11 1591 212 40 5 chr11 46475411 46475855 -104307698 + L1ME1 LINE L1 4388 4847 -1299 4300 139 28 5 chr11 46475855 46476602 -104306951 + L1MA7 LINE L1 5526 6289 -2 2021 125 0 4 chr11 46476699 46477041 -104306512 + AluSg SINE Alu 1 341 0 879 190 38 35 chr11 46477067 46477355 -104306198 + L1ME1 LINE L1 5377 5686 -480 1433 204 95 13 chr11 46477373 46477761 -104305792 + L1ME1 LINE L1 5747 6166 0 * 2200 201 73 18 chr11 46477758 46478594 -104304959 + L1MDa LINE L1 986 3590 -2950 535 153 16 16 chr11 46478797 46478921 -104304632 - AluY SINE Alu -2 309 186 435 170 0 0 chr11 46478931 46479031 -104304522 + G-rich Low_complexity Low_complexity 1 100 0 631 181 7 0 chr11 46479463 46479601 -104303952 - AluY SINE Alu -172 139 1 1976 252 70 17 chr11 46479661 46479939 -104303614 - L1M4 LINE L1 -2649 3497 3235 1495 178 23 58 chr11 46479939 46480248 -104303305 - AluJo SINE Alu -14 298 1 1976 252 70 17 chr11 46480248 46480739 -104302814 - L1M4 LINE L1 -2911 3235 2687 2894 16 0 0 chr11 46481053 46481363 -104302190 - AluYb8 SINE Alu -8 310 1 245 229 104 21 chr11 46482289 46482385 -104301168 - MIR3 SINE MIR -7 201 98 2332 100 0 10 chr11 46483978 46484288 -104299265 - AluSx SINE Alu -5 307 1 1499 159 80 60 chr11 46484407 46484708 -104298845 + AluJo SINE Alu 1 307 -5 423 171 125 11 chr11 46487532 46487620 -104295933 + L2 LINE L2 3172 3269 -3 5541 167 25 16 chr11 46487736 46488839 -104294714 + L1MD1 LINE L1 4901 6025 -217 2166 100 0 10 chr11 46488839 46489139 -104294414 - AluY SINE Alu -14 297 1 5541 167 25 16 chr11 46489139 46489360 -104294193 + L1MD1 LINE L1 6025 6242 0 310 214 22 0 chr11 46489519 46489608 -104293945 + (TA)n Simple_repeat Simple_repeat 1 91 0 338 265 38 0 chr11 46490941 46491028 -104292525 + MIR3 SINE MIR 77 167 -41 261 312 64 8 chr11 46492594 46492719 -104290834 - MIR3 SINE MIR -13 195 64 344 298 26 18 chr11 46492990 46493104 -104290449 + L2 LINE L2 3184 3298 -15 310 237 0 0 chr11 46494594 46494653 -104288900 + tRNA-Ile-ATT tRNA tRNA 1 59 -18 683 262 161 19 chr11 46495044 46495558 -104287995 - L2 LINE L2 0 3313 2746 1650 192 68 29 chr11 46495621 46496032 -104287521 + MLT1C LTR MaLR 37 463 -4 1218 264 167 9 chr11 46496287 46496825 -104286728 - L2 LINE L2 -627 2687 2065 710 238 152 52 chr11 46497828 46498307 -104285246 - L1ME4a LINE L1 -3 6118 5592 226 167 0 0 chr11 46498311 46498353 -104285200 - L1MC4 LINE L1 -1343 6699 6658 245 321 86 49 chr11 46498425 46498668 -104284885 - L1ME4a LINE L1 -562 5559 5308 329 265 53 30 chr11 46499441 46499573 -104283980 + MIR3 SINE MIR 65 199 -9 2121 109 6 38 chr11 46500416 46500736 -104282817 - AluSx SINE Alu -2 310 1 240 261 155 63 chr11 46502918 46502973 -104280580 + L3b LINE CR1 1296 1345 -238 1993 106 0 81 chr11 46502973 46503294 -104280259 + AluSq SINE Alu 1 295 -18 240 261 155 63 chr11 46503294 46503380 -104280173 + L3b LINE CR1 1345 1450 -133 1437 194 48 7 chr11 46503385 46503658 -104279895 - AluJo SINE Alu -12 300 17 182 367 0 0 chr11 46503867 46503927 -104279626 - L2 LINE L2 -218 3054 2995 2222 101 3 3 chr11 46504586 46504883 -104278670 - AluSc SINE Alu -12 297 1 225 0 0 0 chr11 46504883 46504908 -104278645 + (T)n Simple_repeat Simple_repeat 1 25 0 316 54 0 0 chr11 46504908 46504945 -104278608 - LTR8 LTR ERV1 -107 584 548 1904 176 27 0 chr11 46505030 46505365 -104278188 + MER2 DNA MER2_type 1 344 0 846 208 6 18 chr11 46505602 46505770 -104277783 + FAM SINE Alu 1 166 -9 421 227 45 0 chr11 46506085 46506173 -104277380 - AluJo SINE Alu -100 212 121 298 320 0 37 chr11 46506456 46506616 -104276937 + MIR SINE MIR 3 154 -73 187 196 43 0 chr11 46506636 46506682 -104276871 - L2 LINE L2 0 3313 3266 443 250 23 23 chr11 46507679 46507811 -104275742 + MIR SINE MIR 20 151 -111 735 225 97 18 chr11 46507983 46508210 -104275343 + MIR SINE MIR 15 259 -3 202 139 23 0 chr11 46508735 46508778 -104274775 + L2 LINE L2 3228 3271 -1 225 0 0 0 chr11 46508810 46508835 -104274718 + (T)n Simple_repeat Simple_repeat 1 25 0 272 311 22 11 chr11 46511015 46511105 -104272448 - MIR3 SINE MIR -5 203 113 26 0 0 0 chr11 46511556 46511582 -104271971 + AT_rich Low_complexity Low_complexity 1 26 0 2255 107 0 16 chr11 46512906 46513214 -104270339 - AluSq SINE Alu -10 303 1 219 36 0 0 chr11 46514625 46514653 -104268900 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1903 168 3 7 chr11 46514656 46514959 -104268594 - AluJo SINE Alu -10 302 1 2308 96 3 0 chr11 46515450 46515741 -104267812 + AluY SINE Alu 1 292 -19 209 298 0 53 chr11 46515750 46515844 -104267709 - L2 LINE L2 -40 3273 3185 203 270 79 22 chr11 46515995 46516084 -104267469 + MIR SINE MIR 98 191 -71 2414 273 103 20 chr11 46517435 46518604 -104264949 - L2 LINE L2 -1 3312 2031 4249 231 131 20 chr11 46518615 46519864 -104263689 + L1ME1 LINE L1 2027 3136 -3097 1809 156 26 66 chr11 46519864 46520242 -104263311 + MLT1A1 LTR MaLR 1 363 -2 4249 231 131 20 chr11 46520242 46521105 -104262448 + L1ME1 LINE L1 3136 6039 -194 218 388 41 0 chr11 46521262 46521360 -104262193 - L2 LINE L2 -17 3255 3154 1564 178 84 39 chr11 46522058 46522417 -104261136 + MLT1B LTR MaLR 16 390 0 301 337 29 35 chr11 46522633 46522805 -104260748 - MIR SINE MIR -56 206 36 231 36 0 0 chr11 46522953 46522981 -104260572 + (CA)n Simple_repeat Simple_repeat 2 29 0 26 0 0 0 chr11 46526406 46526432 -104257121 + AT_rich Low_complexity Low_complexity 1 26 0 225 245 57 38 chr11 46527833 46527939 -104255614 + MIR3 SINE MIR 94 201 -7 331 256 71 48 chr11 46532573 46532767 -104250786 - MIR3 SINE MIR -56 206 9 223 202 176 59 chr11 46533841 46533960 -104249593 - L2 LINE L2 -214 3058 2926 205 356 78 0 chr11 46534891 46535006 -104248547 - L2 LINE L2 -3 3269 3146 207 204 0 20 chr11 46535101 46535150 -104248403 + MIR SINE MIR 82 129 -79 239 295 53 11 chr11 46535150 46535245 -104248308 - L2 LINE L2 -16 3297 3199 1816 154 0 13 chr11 46535622 46535933 -104247620 + AluJo SINE Alu 1 307 -5 180 0 0 0 chr11 46536290 46536310 -104247243 + (A)n Simple_repeat Simple_repeat 1 20 0 269 314 102 8 chr11 46536621 46536739 -104246814 - L2 LINE L2 -33 3239 3111 922 203 10 36 chr11 46536748 46536769 -104246784 + AluJo SINE Alu 116 136 -176 1602 172 3 31 chr11 46536769 46537089 -104246464 + AluJo SINE Alu 1 311 -1 922 203 10 36 chr11 46537089 46537259 -104246294 + AluJo SINE Alu 136 302 -10 182 176 20 0 chr11 46537321 46537372 -104246181 + (AGTTG)n Simple_repeat Simple_repeat 3 54 0 389 224 6 0 chr11 46537385 46537546 -104246007 + (TTGTG)n Simple_repeat Simple_repeat 4 165 0 228 242 16 0 chr11 46537553 46537615 -104245938 + (AGTTG)n Simple_repeat Simple_repeat 2 64 0 454 207 11 0 chr11 46537624 46537798 -104245755 + (TTGTG)n Simple_repeat Simple_repeat 4 179 0 261 233 41 0 chr11 46537801 46537874 -104245679 + (GGTTG)n Simple_repeat Simple_repeat 3 78 0 264 303 83 9 chr11 46537896 46538005 -104245548 - L2 LINE L2 -231 3082 2966 455 234 193 0 chr11 46538879 46539024 -104244529 + MIR3 SINE MIR 30 202 -6 2124 152 12 26 chr11 46539741 46540083 -104243470 - MER1B DNA MER1_type 0 337 1 522 256 56 50 chr11 46540083 46540263 -104243290 + MIR SINE MIR 17 197 -65 184 333 146 0 chr11 46541309 46541405 -104242148 - MIR3 SINE MIR -11 197 88 205 310 172 41 chr11 46542282 46542427 -104241126 - L3 LINE CR1 -200 1377 1214 268 311 78 64 chr11 46542745 46543028 -104240525 + L2 LINE L2 2985 3271 -1 267 365 46 57 chr11 46543957 46544220 -104239333 - L3 LINE CR1 -102 1475 1216 202 250 0 44 chr11 46544948 46545016 -104238537 - L2 LINE L2 -64 3249 3185 672 201 6 6 chr11 46545107 46545271 -104238282 + L1MC3 LINE L1 7461 7624 -161 2110 236 87 36 chr11 46545276 46546059 -104237494 + L1ME1 LINE L1 5314 6136 -30 2142 118 0 10 chr11 46546059 46546363 -104237190 + AluSq SINE Alu 1 301 -12 361 289 77 19 chr11 46546431 46546639 -104236914 + L1ME LINE L1 5583 5802 -319 352 210 78 132 chr11 46546641 46546666 -104236887 + L2 LINE L2 3120 3145 -168 1935 145 3 0 chr11 46546666 46546956 -104236597 - AluSx SINE Alu -16 296 6 352 210 78 132 chr11 46546956 46547135 -104236418 + L2 LINE L2 3145 3313 0 356 257 43 14 chr11 46547485 46547625 -104235928 + MER53 DNA DNA 36 179 -10 288 91 0 0 chr11 46547996 46548040 -104235513 + (CA)n Simple_repeat Simple_repeat 1 44 0 2217 97 0 0 chr11 46548062 46548361 -104235192 - AluSq SINE Alu -14 299 1 284 336 142 14 chr11 46548401 46548817 -104234736 - L1ME LINE L1 -268 5853 5385 233 368 61 31 chr11 46549824 46549987 -104233566 - MIR SINE MIR -45 217 50 190 0 32 32 chr11 46550386 46550417 -104233136 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 243 306 28 0 chr11 46550503 46550575 -104232978 - MIR SINE MIR -116 146 73 678 169 23 15 chr11 46550580 46550710 -104232843 + FLAM_C SINE Alu 3 133 0 269 162 0 122 chr11 46550995 46551069 -104232484 + L1MC4 LINE L1 7814 7878 -164 716 156 0 0 chr11 46551069 46551178 -104232375 - AluSx SINE Alu -8 302 194 821 85 0 0 chr11 46551178 46551284 -104232269 - AluSx SINE Alu -206 106 1 398 234 42 22 chr11 46551387 46551521 -104232032 + L1MC4 LINE L1 7880 8042 0 533 241 32 19 chr11 46552497 46552658 -104230895 - MIR SINE MIR -65 197 34 284 248 141 40 chr11 46553059 46553208 -104230345 - MIR3 SINE MIR -39 169 6 220 310 56 14 chr11 46553399 46553470 -104230083 + MIR SINE MIR 13 86 -176 * 362 306 182 10 chr11 46553468 46553677 -104229876 - L2 LINE L2 0 3272 3028 474 286 84 28 chr11 46553824 46554002 -104229551 + MIR SINE MIR 63 250 -12 1776 137 18 4 chr11 46554495 46554801 -104228752 - AluSx SINE Alu 0 310 1 1911 142 3 6 chr11 46554900 46555211 -104228342 - AluSg SINE Alu 0 310 1 1572 161 4 50 chr11 46555333 46555613 -104227940 - AluJo SINE Alu -45 267 1 1624 160 18 21 chr11 46555908 46556190 -104227363 + AluJo SINE Alu 1 281 -31 793 73 8 8 chr11 46556194 46556317 -104227236 + (GGAA)n Simple_repeat Simple_repeat 2 124 0 925 101 31 0 chr11 46556395 46556524 -104227029 + AluSq/x SINE Alu 1 133 -180 188 184 0 0 chr11 46557259 46557297 -104226256 + MIR SINE MIR 117 154 -108 821 235 53 37 chr11 46557862 46557918 -104225635 - MIR SINE MIR -1 261 207 2201 88 0 3 chr11 46557918 46558245 -104225308 - AluSq SINE Alu 0 326 1 821 235 53 37 chr11 46558245 46558430 -104225123 - MIR SINE MIR -55 207 15 1885 230 43 13 chr11 46559205 46559762 -104223791 + L1M4 LINE L1 4792 5365 -781 1472 145 43 46 chr11 46559762 46559819 -104223734 + L1MB4 LINE L1 5878 5934 -246 2387 95 0 0 chr11 46559819 46560124 -104223429 + AluSq SINE Alu 1 305 -8 1472 145 43 46 chr11 46560124 46560369 -104223184 + L1MB4 LINE L1 5934 6179 -1 207 143 0 0 chr11 46560453 46560488 -104223065 + L2 LINE L2 2722 2756 -558 2036 119 7 0 chr11 46560527 46560841 -104222712 + AluJb SINE Alu 1 316 0 338 342 26 13 chr11 46560900 46561055 -104222498 + L2 LINE L2 2889 3045 -227 182 329 85 0 chr11 46561255 46561337 -104222216 + MIR SINE MIR 98 186 -76 355 164 64 82 chr11 46562038 46562148 -104221405 - L2 LINE L2 0 3313 3206 2417 67 3 0 chr11 46562445 46562745 -104220808 - AluY SINE Alu -5 306 6 686 271 28 17 chr11 46562866 46563070 -104220483 + MIR SINE MIR 43 245 -17 181 308 0 0 chr11 46563133 46563172 -104220381 - MIR SINE MIR -107 155 117 190 250 0 0 chr11 46563416 46563456 -104220097 + L2 LINE L2 3126 3165 -107 234 335 110 53 chr11 46564032 46564241 -104219312 + L2 LINE L2 3034 3254 -18 195 362 0 14 chr11 46564252 46564321 -104219232 + MIR3 SINE MIR 120 187 -21 199 211 200 11 chr11 46564810 46564905 -104218648 + MIR SINE MIR 34 146 -62 250 212 152 10 chr11 46565586 46565685 -104217868 + MIR SINE MIR 34 146 -62 279 274 0 34 chr11 46569567 46569684 -104213869 + L1ME3 LINE L1 6036 6148 -14 212 258 75 43 chr11 46571698 46571791 -104211762 - MIR SINE MIR -107 155 60 492 279 0 0 chr11 46572257 46572429 -104211124 + (TG)n Simple_repeat Simple_repeat 1 172 0 207 191 0 73 chr11 46573587 46573697 -104209856 + (CCGCG)n Simple_repeat Simple_repeat 5 106 0 189 94 0 0 chr11 46574174 46574206 -104209347 + (CTG)n Simple_repeat Simple_repeat 3 34 0 475 147 43 0 chr11 46574663 46574779 -104208774 + CT-rich Low_complexity Low_complexity 1 121 0 241 270 0 27 chr11 46574909 46574983 -104208570 + C-rich Low_complexity Low_complexity 5 76 0 300 308 65 0 chr11 46575858 46575965 -104207588 - MIR SINE MIR -80 182 69 306 372 62 22 chr11 46576681 46576955 -104206598 + L2 LINE L2 2869 3153 -119 2039 90 3 28 chr11 46577023 46577350 -104206203 + AluY SINE Alu 1 320 0 185 238 381 0 chr11 46577542 46577626 -104205927 + L2 LINE L2 3157 3272 0 418 220 300 40 chr11 46578900 46579127 -104204426 + L2 LINE L2 3026 3311 -2 301 160 53 0 chr11 46579267 46579342 -104204211 + CT-rich Low_complexity Low_complexity 2 80 0 893 130 5 27 chr11 46579350 46579534 -104204019 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2201 129 0 0 chr11 46579544 46579854 -104203699 - AluY SINE Alu 0 311 2 556 278 59 12 chr11 46580333 46580502 -104203051 - MIR SINE MIR -77 185 9 579 229 34 43 chr11 46582949 46583119 -104200434 + MIR SINE MIR 32 199 -62 202 395 31 6 chr11 46583498 46583660 -104199893 - MIR SINE MIR -81 181 16 195 255 0 0 chr11 46583924 46583971 -104199582 + L2 LINE L2 3213 3259 -13 22 0 0 0 chr11 46584554 46584576 -104198977 + GC_rich Low_complexity Low_complexity 1 22 0 474 276 92 17 chr11 46587179 46587353 -104196200 + MIR3 SINE MIR 18 204 -4 202 216 0 0 chr11 46587576 46587613 -104195940 + (TG)n Simple_repeat Simple_repeat 1 37 0 2242 93 7 0 chr11 46588109 46588387 -104195166 + AluSx SINE Alu 2 281 -31 443 246 99 7 chr11 46588799 46588941 -104194612 + MIR SINE MIR 34 188 -74 445 80 67 0 chr11 46589346 46589421 -104194132 - L1MB5 LINE L1 0 6174 6095 1136 222 109 54 chr11 46589907 46590349 -104193204 - MLT1C LTR MaLR 0 467 2 181 303 160 25 chr11 46591473 46591592 -104191961 + L2 LINE L2 2953 3087 -185 489 229 137 17 chr11 46592648 46592823 -104190730 + MIR SINE MIR 66 261 -1 326 280 154 28 chr11 46593615 46593797 -104189756 + L2 LINE L2 3108 3312 -1 * 375 300 52 36 chr11 46593783 46593984 -104189569 - MIR SINE MIR -56 206 3 521 285 64 12 chr11 46594107 46594279 -104189274 - MIR SINE MIR -58 204 24 222 91 0 0 chr11 46594531 46594564 -104188989 + (TG)n Simple_repeat Simple_repeat 2 34 0 200 344 11 0 chr11 46595022 46595115 -104188438 + (TG)n Simple_repeat Simple_repeat 1 94 0 368 204 26 35 chr11 46595504 46595617 -104187936 + MIR SINE MIR 21 132 -130 255 261 0 14 chr11 46596635 46596704 -104186849 + C-rich Low_complexity Low_complexity 3 70 0 925 75 0 0 chr11 46597161 46597294 -104186259 + L1PA13 LINE L1 6027 6159 -4 485 314 93 5 chr11 46597809 46598003 -104185550 - MIR SINE MIR -45 217 7 1418 208 123 14 chr11 46598705 46599119 -104184434 + MLT1C LTR MaLR 7 465 -2 344 297 63 0 chr11 46599149 46599260 -104184293 + MIR SINE MIR 89 206 -56 1469 179 63 11 chr11 46600047 46600338 -104183215 - AluJb SINE Alu 0 305 1 212 295 53 11 chr11 46600715 46600810 -104182743 + L2 LINE L2 3199 3297 -16 200 182 0 23 chr11 46600810 46600854 -104182699 - MIR SINE MIR -79 129 87 1517 70 22 26 chr11 46601428 46601658 -104181895 - L1PA10 LINE L1 -1 6167 5939 410 255 0 10 chr11 46601724 46601826 -104181727 - MIR SINE MIR -101 161 61 384 262 74 23 chr11 46602422 46602620 -104180933 + MIR SINE MIR 48 260 -2 207 204 0 0 chr11 46603506 46603550 -104180003 + CT-rich Low_complexity Low_complexity 2 45 0 245 29 29 0 chr11 46604183 46604217 -104179336 + (TTA)n Simple_repeat Simple_repeat 2 36 0 192 125 0 0 chr11 46606092 46606124 -104177429 + (T)n Simple_repeat Simple_repeat 1 32 0 2146 122 0 17 chr11 46608288 46608583 -104174970 - AluJb SINE Alu -22 290 1 240 59 0 0 chr11 46609844 46609878 -104173675 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2222 113 0 0 chr11 46609878 46610161 -104173392 - AluSx SINE Alu -29 283 1 185 229 14 57 chr11 46610255 46610325 -104173228 + MIR SINE MIR 183 249 -13 189 107 0 0 chr11 46610532 46610560 -104172993 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1596 153 71 0 chr11 46610569 46610824 -104172729 - AluJb SINE Alu -39 273 1 232 343 9 9 chr11 46610852 46610960 -104172593 + HAL1b LINE L1 1196 1303 -45 2193 115 3 13 chr11 46611292 46611316 -104172237 - AluSx SINE Alu -11 301 278 243 0 0 0 chr11 46611316 46611343 -104172210 + (TG)n Simple_repeat Simple_repeat 1 27 0 2193 115 3 13 chr11 46611343 46611622 -104171931 - AluSx SINE Alu -34 278 1 307 283 131 10 chr11 46612006 46612105 -104171448 + MIR SINE MIR 36 146 -62 298 235 15 0 chr11 46612280 46612348 -104171205 - L2 LINE L2 -212 3060 2992 320 294 194 17 chr11 46612703 46612883 -104170670 + MIR SINE MIR 20 231 -31 353 318 132 16 chr11 46613738 46613927 -104169626 - MIR SINE MIR -4 258 48 535 286 27 27 chr11 46614536 46614721 -104168832 + L2 LINE L2 1146 1330 -1984 6823 86 1 18 chr11 46616467 46616551 -104167002 - L1P LINE L1 -4214 1932 1848 2158 122 23 3 chr11 46616551 46616855 -104166698 + AluY SINE Alu 2 311 0 6823 86 1 18 chr11 46616855 46617792 -104165761 - L1P LINE L1 -4298 1848 928 9588 121 48 9 chr11 46617892 46619399 -104164154 - L1P LINE L1 -4569 1577 11 810 123 0 9 chr11 46619416 46619530 -104164023 - FLAM_C SINE Alu -18 125 13 1802 186 3 6 chr11 46619564 46619876 -104163677 - AluSx SINE Alu 0 312 2 308 207 0 0 chr11 46620038 46620096 -104163457 - MLT1B LTR MaLR -6 384 327 1259 183 126 19 chr11 46621338 46621462 -104162091 + AluJo SINE Alu 3 112 -200 207 0 0 0 chr11 46621462 46621485 -104162068 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1259 183 126 19 chr11 46621485 46621623 -104161930 + AluJo SINE Alu 112 293 -19 604 242 66 16 chr11 46621643 46621825 -104161728 - MIR SINE MIR -50 212 22 529 260 24 0 chr11 46622211 46622338 -104161215 + MIR SINE MIR 68 197 -65 611 316 107 8 chr11 46622589 46622852 -104160701 + MLT1K LTR MaLR 42 330 -258 501 216 23 76 chr11 46623028 46623142 -104160411 - MER103 DNA DNA -3 163 59 2361 75 0 46 chr11 46623142 46623448 -104160105 - AluSp SINE Alu -21 292 1 501 216 23 76 chr11 46623448 46623504 -104160049 - MER103 DNA DNA -107 59 2 391 174 224 0 chr11 46623510 46623608 -104159945 - L2 LINE L2 -1 3312 3193 1185 134 143 5 chr11 46624520 46624729 -104158824 - AluSq SINE Alu -75 238 1 1257 283 100 40 chr11 46625168 46625719 -104157834 + MLT1E LTR MaLR 1 584 -9 443 265 22 15 chr11 46625725 46625861 -104157692 - MIR3 SINE MIR -52 156 20 193 281 202 0 chr11 46625933 46626047 -104157506 + MIR SINE MIR 113 249 -13 181 125 31 0 chr11 46626732 46626764 -104156789 - MIR SINE MIR -112 150 118 866 318 67 13 chr11 46626800 46627263 -104156290 - L1ME3A LINE L1 -218 5952 5465 336 333 51 6 chr11 46627443 46627599 -104155954 + L2 LINE L2 3151 3313 0 636 262 53 34 chr11 46628350 46628556 -104154997 + MIR SINE MIR 8 217 -45 420 315 8 0 chr11 46628589 46628716 -104154837 - L2 LINE L2 0 3272 3145 231 36 0 0 chr11 46630030 46630058 -104153495 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 282 244 13 39 chr11 46630265 46630343 -104153210 - MIR3 SINE MIR -40 168 93 310 188 38 25 chr11 46630414 46630494 -104153059 + MIR SINE MIR 58 138 -124 452 206 122 0 chr11 46631165 46631272 -104152281 + L2 LINE L2 3153 3272 0 248 320 203 0 chr11 46631995 46632148 -104151405 - MIR SINE MIR 0 262 79 * 346 286 10 0 chr11 46632136 46632234 -104151319 + MIR3 SINE MIR 58 156 -52 364 318 0 7 chr11 46632575 46632726 -104150827 + GA-rich Low_complexity Low_complexity 1 150 0 327 331 0 7 chr11 46632765 46632916 -104150637 + GA-rich Low_complexity Low_complexity 2 151 0 369 221 63 0 chr11 46633513 46633608 -104149945 - MIR SINE MIR -14 248 148 260 240 180 30 chr11 46633655 46633755 -104149798 - MIR SINE MIR -62 146 32 648 287 118 25 chr11 46634207 46634573 -104148980 - MLT1L LTR MaLR 0 615 216 252 342 11 88 chr11 46634727 46634987 -104148566 + MLT1K LTR MaLR 192 431 -157 306 242 134 60 chr11 46635421 46635570 -104147983 - MIR SINE MIR 0 262 103 1355 177 107 10 chr11 46635712 46636011 -104147542 - MER2 DNA MER2_type -2 343 16 1999 256 59 28 chr11 46636275 46636850 -104146703 - MLT1E LTR MaLR 0 593 1 2635 92 22 30 chr11 46636926 46637328 -104146225 + MLT2A1 LTR ERVL 1 399 -45 302 100 0 20 chr11 46637541 46637591 -104145962 + MLT2A1 LTR ERVL 405 453 0 8550 64 4 15 chr11 46637591 46638718 -104144835 + HERVL-A1 LTR ERVL 1 1115 -4539 2117 74 3 0 chr11 46638823 46639106 -104144447 + HERVL-A1 LTR ERVL 1096 1379 -4275 2370 127 49 42 chr11 46639475 46639900 -104143653 - MSTA LTR MaLR 0 428 1 832 246 170 44 chr11 46640126 46640532 -104143021 - L2 LINE L2 0 3313 2857 202 211 0 0 chr11 46640634 46640672 -104142881 + L2 LINE L2 3217 3254 -18 296 238 24 95 chr11 46641054 46641180 -104142373 - MIR SINE MIR -51 211 95 510 96 0 0 chr11 46641722 46641795 -104141758 + (TCCA)n Simple_repeat Simple_repeat 2 74 0 316 309 161 18 chr11 46642235 46642403 -104141150 + L2 LINE L2 2687 2878 -436 422 196 181 53 chr11 46642460 46642593 -104140960 + MER63 DNA MER1_type 2 777 -59 715 297 23 0 chr11 46642642 46642871 -104140682 + MIR SINE MIR 16 251 -11 263 245 66 94 chr11 46643796 46643902 -104139651 + L2 LINE L2 3133 3235 -37 229 176 255 0 chr11 46644049 46644100 -104139453 + L2 LINE L2 3227 3290 -23 327 283 10 116 chr11 46644494 46644592 -104138961 + MIR SINE MIR 4 111 -151 1739 158 42 11 chr11 46644592 46644876 -104138677 - AluJb SINE Alu -19 293 1 327 283 10 116 chr11 46644876 46644890 -104138663 + MIR SINE MIR 111 125 -137 1867 183 0 10 chr11 46644890 46645202 -104138351 - AluJo SINE Alu -3 309 1 327 283 10 116 chr11 46645202 46645286 -104138267 + MIR SINE MIR 125 180 -82 385 296 16 8 chr11 46645405 46645530 -104138023 + MIR SINE MIR 27 152 -110 399 343 36 28 chr11 46646093 46646341 -104137212 + L2 LINE L2 2838 3087 -185 211 327 0 0 chr11 46646462 46646514 -104137039 + L2 LINE L2 3148 3199 -73 337 307 129 82 chr11 46646567 46647007 -104136546 - L2 LINE L2 0 3272 2812 936 167 8 96 chr11 46647029 46647269 -104136284 + MER20 DNA MER1_type 1 219 0 235 175 18 0 chr11 46647430 46647487 -104136066 + L1MB3 LINE L1 6096 6153 -30 521 295 90 0 chr11 46647805 46647961 -104135592 + MIR SINE MIR 28 197 -65 818 192 13 0 chr11 46647980 46648131 -104135422 + FRAM SINE Alu 1 153 -23 591 266 101 11 chr11 46648188 46648376 -104135177 + MIR SINE MIR 56 260 -2 218 277 15 15 chr11 46648812 46648877 -104134676 + CT-rich Low_complexity Low_complexity 2 66 0 351 270 68 14 chr11 46649820 46649968 -104133585 - L3 LINE CR1 -222 1355 1200 371 306 35 35 chr11 46650223 46650393 -104133160 + L2 LINE L2 2914 3083 -189 301 348 118 0 chr11 46650607 46650742 -104132811 - MIR SINE MIR -36 226 76 2462 74 7 0 chr11 46650745 46651042 -104132511 - AluSp SINE Alu -14 299 1 191 311 0 0 chr11 46651947 46651992 -104131561 + L2 LINE L2 3250 3294 -19 306 0 0 0 chr11 46652070 46652104 -104131449 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 310 287 38 32 chr11 46652308 46652465 -104131088 - MIR SINE MIR -16 246 89 352 260 98 0 chr11 46652469 46652592 -104130961 + MLT1I LTR MaLR 1 135 -274 543 286 35 18 chr11 46652618 46652789 -104130764 + MLT1I LTR MaLR 228 401 -8 254 273 52 13 chr11 46652796 46652873 -104130680 - MIR SINE MIR -172 90 11 1981 153 3 10 chr11 46653129 46653437 -104130116 + AluJb SINE Alu 4 309 -3 292 250 156 23 chr11 46653444 46653572 -104129981 - MIR SINE MIR -25 237 93 686 207 35 27 chr11 46653754 46653943 -104129610 - L1MD2 LINE L1 -1 8041 6261 1588 236 62 2 chr11 46653952 46654384 -104129169 - L1MC4 LINE L1 -381 7661 7204 1853 215 43 5 chr11 46654680 46655056 -104128497 - MLT1B LTR MaLR 0 390 1 233 186 51 17 chr11 46656217 46656276 -104127277 + MIR3 SINE MIR 15 75 -133 452 342 60 82 chr11 46656362 46657036 -104126517 + L2 LINE L2 2612 3272 0 373 295 45 0 chr11 46657244 46657356 -104126197 + MIR SINE MIR 129 245 -17 180 250 50 0 chr11 46657324 46657364 -104126189 + L2 LINE L2 3218 3259 -13 * 2391 95 0 3 chr11 46657384 46657689 -104125864 - AluSc SINE Alu -5 304 1 1895 159 7 3 chr11 46657792 46658087 -104125466 - AluSx SINE Alu -16 296 1 541 243 179 75 chr11 46658161 46658565 -104124988 - MLT1J LTR MaLR -19 427 2 223 326 61 0 chr11 46658585 46658683 -104124870 + L2 LINE L2 3210 3313 0 966 200 6 4 chr11 46658761 46658960 -104124593 + MIR SINE MIR 61 257 -5 2112 146 0 0 chr11 46659773 46660068 -104123485 + AluSx SINE Alu 1 295 -17 30747 95 11 11 chr11 46660081 46665578 -104117975 + L1PA7 LINE L1 599 6098 -56 945 122 0 0 chr11 46665726 46665849 -104117704 - AluSq/x SINE Alu -189 123 1 196 241 19 19 chr11 46666045 46666099 -104117454 - L2 LINE L2 -304 2968 2915 2559 34 10 0 chr11 46666108 46666402 -104117151 + AluY SINE Alu 1 297 -14 1565 179 55 97 chr11 46667113 46667273 -104116280 + MER63B DNA MER1_type 1 166 -896 1580 106 0 0 chr11 46667273 46667501 -104116052 + AluSg/x SINE Alu 86 313 0 1565 179 55 97 chr11 46667501 46667791 -104115762 + MER63B DNA MER1_type 166 433 -3 405 227 200 20 chr11 46668434 46668584 -104114969 - MIR SINE MIR -3 259 83 471 283 3 2 chr11 46668864 46669005 -104114548 + MIR SINE MIR 19 157 -61 251 368 37 6 chr11 46669845 46670008 -104113545 - MIR3 SINE MIR -36 172 5 208 268 14 42 chr11 46670463 46670534 -104113019 + MER5A DNA MER1_type 50 118 -71 225 245 167 10 chr11 46670757 46670859 -104112694 + MIR3 SINE MIR 86 203 -5 389 20 20 0 chr11 46671248 46671298 -104112255 + (TG)n Simple_repeat Simple_repeat 2 52 0 2083 142 0 13 chr11 46671347 46671649 -104111904 + AluSx SINE Alu 1 298 -14 467 199 57 71 chr11 46671656 46671797 -104111756 + MIR SINE MIR 124 262 0 258 32 0 0 chr11 46671807 46671838 -104111715 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2072 106 22 0 chr11 46671840 46672115 -104111438 - AluSp SINE Alu -32 281 1 318 219 42 52 chr11 46672209 46672401 -104111152 + MER113 DNA MER1_type? 53 242 -279 1022 193 0 6 chr11 46672447 46672623 -104110930 + AluJo SINE Alu 122 296 -16 350 217 209 31 chr11 46672646 46672775 -104110778 + L1MD2 LINE L1 6194 6345 -14 618 257 131 9 chr11 46672809 46673031 -104110522 + MER113 DNA MER1_type? 273 521 0 284 333 76 9 chr11 46673231 46673336 -104110217 + MIR SINE MIR 36 147 -61 606 227 9 0 chr11 46673462 46673572 -104109981 + MER81 DNA DNA 2 112 -2 1128 148 7 76 chr11 46673589 46673880 -104109673 + MER33 DNA MER1_type 37 307 -17 439 280 115 19 chr11 46675270 46675427 -104108126 + MIR3 SINE MIR 28 199 -9 495 267 33 71 chr11 46676217 46676427 -104107126 + L2 LINE L2 3104 3305 -8 1108 257 56 45 chr11 46676678 46677122 -104106431 - LTR33 LTR ERVL -72 449 1 981 232 80 48 chr11 46677171 46677670 -104105883 - MLT1G LTR MaLR -36 531 7 207 306 14 28 chr11 46677877 46677949 -104105604 - MIR SINE MIR -59 149 79 786 286 72 51 chr11 46678496 46678870 -104104683 + MER115 DNA AcHobo 54 435 -258 837 139 134 32 chr11 46679132 46679319 -104104234 - MSTA LTR MaLR -2 426 221 535 165 174 0 chr11 46679672 46679781 -104103772 - MIR SINE MIR -88 174 47 181 262 19 97 chr11 46680030 46680133 -104103420 + L2 LINE L2 3167 3261 -11 2662 135 39 11 chr11 46680661 46681127 -104102426 - L1MB2 LINE L1 0 6171 5693 361 291 19 0 chr11 46681191 46681294 -104102259 - MIR SINE MIR -109 153 49 383 233 11 22 chr11 46681442 46681532 -104102021 + MIR SINE MIR 4 92 -170 227 133 0 44 chr11 46681532 46681577 -104101976 + MER117 DNA MER1_type 117 159 -38 1715 174 10 10 chr11 46681959 46682439 -104101114 - AluJb SINE Alu 0 312 14 216 245 19 0 chr11 46683323 46683376 -104100177 + G-rich Low_complexity Low_complexity 2 55 0 304 295 103 58 chr11 46683508 46683664 -104099889 - MIR3 SINE MIR -23 185 23 417 297 101 72 chr11 46684157 46684554 -104098999 + MLT1K LTR MaLR 121 534 -54 480 35 0 0 chr11 46684554 46684612 -104098941 + (CTATT)n Simple_repeat Simple_repeat 2 59 0 417 297 101 72 chr11 46684612 46684669 -104098884 + MLT1K LTR MaLR 534 588 0 789 205 6 93 chr11 46685484 46685691 -104097862 - MIR SINE MIR -54 208 18 417 279 60 0 chr11 46686698 46686832 -104096721 + MIR3 SINE MIR 54 193 -15 422 316 94 19 chr11 46686958 46687170 -104096383 - MIR SINE MIR 0 262 35 239 263 17 143 chr11 46687810 46687985 -104095568 + LTR67 LTR ERVL 37 189 -368 672 219 89 24 chr11 46688298 46688467 -104095086 - MIR SINE MIR -70 192 13 1038 167 0 0 chr11 46688483 46688645 -104094908 + FRAM SINE Alu 1 162 -14 2166 169 129 24 chr11 46688648 46689105 -104094448 + MLT1D LTR MaLR 1 505 0 236 320 0 0 chr11 46689183 46689261 -104094292 + L2 LINE L2 3195 3272 0 2350 107 0 0 chr11 46689880 46690179 -104093374 - AluSq SINE Alu -14 299 1 465 140 54 0 chr11 46690310 46690403 -104093150 + L1MD3 LINE L1 7898 7995 0 253 243 162 0 chr11 46690543 46690617 -104092936 + L2 LINE L2 3141 3226 -46 461 266 158 40 chr11 46690617 46690794 -104092759 - MIR SINE MIR -31 231 34 559 266 85 16 chr11 46690837 46691025 -104092528 + MIR SINE MIR 36 236 -26 357 24 0 0 chr11 46691070 46691112 -104092441 + (ATG)n Simple_repeat Simple_repeat 1 42 0 640 297 160 33 chr11 46692277 46693032 -104090521 - L2 LINE L2 -109 3204 2354 537 144 0 0 chr11 46693090 46693180 -104090373 + L1 LINE L1 5194 5283 -863 6238 72 2 0 chr11 46693198 46694000 -104089553 + THE1A-int LTR MaLR 777 1580 0 2535 110 6 8 chr11 46694000 46694356 -104089197 + THE1A LTR MaLR 1 355 0 681 274 49 63 chr11 46694357 46694788 -104088765 - L1MC5 LINE L1 -62 7899 7475 1948 154 0 61 chr11 46694788 46695164 -104088389 + MLT1A1 LTR MaLR 9 361 -4 344 303 6 37 chr11 46695167 46695329 -104088224 - L1MC5 LINE L1 -491 7470 7314 298 233 17 0 chr11 46696360 46696420 -104087133 - L2 LINE L2 -63 3209 3149 387 319 1 29 chr11 46696721 46696859 -104086694 - MIR SINE MIR -55 153 18 316 289 94 0 chr11 46696868 46696996 -104086557 - MIR3 SINE MIR -45 163 24 469 288 12 6 chr11 46697524 46697684 -104085869 - MER103 DNA DNA -2 164 4 209 316 126 0 chr11 46697797 46697892 -104085661 + L3 LINE CR1 1178 1284 -293 596 231 0 31 chr11 46698029 46698159 -104085394 + AluJb SINE Alu 2 127 -185 378 242 84 33 chr11 46698173 46698388 -104085165 + L1ME4a LINE L1 5600 5825 -296 1812 130 0 75 chr11 46698391 46698767 -104084786 + AluSx SINE Alu 1 353 0 181 329 137 0 chr11 46698888 46698961 -104084592 - MER5C DNA MER1_type -1 323 241 249 252 92 0 chr11 46699005 46699136 -104084417 + L1ME4a LINE L1 5968 6110 -11 2062 84 9 69 chr11 46699136 46699316 -104084237 - L1MA2 LINE L1 0 6304 6153 2248 116 9 35 chr11 46699316 46699635 -104083918 - AluSx SINE Alu 0 312 2 2062 84 9 69 chr11 46699635 46699801 -104083752 - L1MA2 LINE L1 -151 6153 5979 430 274 30 49 chr11 46700834 46700998 -104082555 - MIR SINE MIR -82 180 20 229 278 41 55 chr11 46701365 46701478 -104082075 + MIR3 SINE MIR 38 159 -49 487 290 6 35 chr11 46701488 46701657 -104081896 + MER5A DNA MER1_type 26 189 0 782 256 105 84 chr11 46702439 46702904 -104080649 - MER77 LTR ERV1 -7 598 194 * 2310 82 65 54 chr11 46702892 46703260 -104080293 + MER48 LTR ERV1 16 387 0 226 180 16 49 chr11 46703299 46703360 -104080193 - MER21B LTR ERV1 -671 192 134 499 231 9 45 chr11 46703385 46703544 -104080009 - MER77 LTR ERV1 -409 196 5 1619 171 44 24 chr11 46703626 46703919 -104079634 + AluJo SINE Alu 1 299 -13 180 0 0 0 chr11 46704798 46704818 -104078735 + (TCCC)n Simple_repeat Simple_repeat 2 21 0 290 291 100 0 chr11 46705027 46705137 -104078416 - L2 LINE L2 0 3272 3152 * 500 280 237 27 chr11 46705113 46705311 -104078242 + L2 LINE L2 2951 3106 -207 180 77 0 0 chr11 46705311 46705337 -104078216 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 500 280 237 27 chr11 46705337 46705438 -104078115 + L2 LINE L2 3106 3313 0 1011 280 28 4 chr11 46706091 46706341 -104077212 + MIR SINE MIR 7 262 0 480 274 78 59 chr11 46706658 46706862 -104076691 + L1MC/D LINE L1 4256 4463 -1683 988 148 7 19 chr11 46706862 46707017 -104076536 + AluJb SINE Alu 1 153 -159 1142 179 5 5 chr11 46707117 46707312 -104076241 + AluJb SINE Alu 102 296 -16 317 297 118 21 chr11 46707339 46707865 -104075688 + L1MC/D LINE L1 4487 5063 -1083 26 0 0 0 chr11 46707995 46708021 -104075532 + AT_rich Low_complexity Low_complexity 1 26 0 572 262 58 15 chr11 46708074 46708312 -104075241 + L1MC/D LINE L1 5352 5597 -572 1199 265 28 56 chr11 46708405 46708798 -104074755 + LTR16A LTR ERVL 57 438 -12 695 304 25 19 chr11 46709119 46709610 -104073943 + HERV16 LTR ERVL 351 881 -4115 979 274 11 7 chr11 46709612 46709882 -104073671 + HERV16 LTR ERVL 1589 1859 -3137 1659 290 54 25 chr11 46709893 46710698 -104072855 + HERV16 LTR ERVL 2569 3396 -1911 949 326 54 20 chr11 46710730 46711728 -104071825 + HERV16 LTR ERVL 3516 4518 -1136 338 324 59 7 chr11 46712097 46712233 -104071320 + MIR SINE MIR 47 189 -73 2419 107 0 0 chr11 46712235 46712545 -104071008 + AluSx SINE Alu 1 310 -2 24 0 0 0 chr11 46712558 46712582 -104070971 + AT_rich Low_complexity Low_complexity 1 24 0 1271 174 15 23 chr11 46712679 46712943 -104070610 - MLT1D LTR MaLR -243 262 1 411 303 26 20 chr11 46713356 46713508 -104070045 + MIR SINE MIR 107 259 -3 1018 262 80 25 chr11 46713587 46713949 -104069604 + MLT1J1 LTR MaLR 63 444 -2 391 289 147 49 chr11 46714160 46714385 -104069168 - MIR SINE MIR 0 262 16 776 244 81 102 chr11 46714952 46715362 -104068191 - MLT1H LTR MaLR -13 536 136 415 279 10 10 chr11 46715576 46715680 -104067873 - MIR SINE MIR -86 122 19 2434 55 0 23 chr11 46715755 46716064 -104067489 - AluY SINE Alu -7 304 3 338 313 22 15 chr11 46716192 46716326 -104067227 - MIR SINE MIR 0 262 128 485 223 148 55 chr11 46716892 46717148 -104066405 + L2 LINE L2 2348 2627 -687 1874 191 100 19 chr11 46717150 46717570 -104065983 + MLT1C LTR MaLR 2 455 -12 1869 151 0 14 chr11 46717928 46718206 -104065347 + AluSx SINE Alu 1 274 -38 462 143 0 0 chr11 46718209 46718286 -104065267 + AluS SINE Alu 224 300 -10 203 313 7 116 chr11 46718382 46718529 -104065024 + MIR3 SINE MIR 13 143 -65 569 302 0 80 chr11 46718534 46718746 -104064807 - MIR SINE MIR -61 201 7 275 243 136 97 chr11 46719312 46719518 -104064035 - MIR SINE MIR -35 227 14 201 161 48 16 chr11 46720563 46720625 -104062928 + (CA)n Simple_repeat Simple_repeat 2 65 0 332 137 65 24 chr11 46720669 46720793 -104062760 + (CA)n Simple_repeat Simple_repeat 1 129 0 214 161 48 16 chr11 46720829 46720953 -104062600 + (CA)n Simple_repeat Simple_repeat 2 129 0 182 147 27 27 chr11 46721005 46721080 -104062473 + (CA)n Simple_repeat Simple_repeat 1 75 0 219 149 0 60 chr11 46721095 46721162 -104062391 + (CA)n Simple_repeat Simple_repeat 1 63 0 1504 206 105 52 chr11 46721210 46721307 -104062246 + MLT1D LTR MaLR 1 91 -414 1822 186 41 19 chr11 46721307 46721673 -104061880 - MLT1A2 LTR MaLR 0 374 1 1504 206 105 52 chr11 46721673 46722041 -104061512 + MLT1D LTR MaLR 91 491 -14 2307 135 89 5 chr11 46722159 46722551 -104061002 + MSTA LTR MaLR 4 428 0 198 0 0 0 chr11 46722616 46722638 -104060915 + (T)n Simple_repeat Simple_repeat 1 22 0 302 305 30 84 chr11 46723240 46723407 -104060146 + MIR3 SINE MIR 1 158 -50 492 311 120 45 chr11 46723416 46723882 -104059671 - L2 LINE L2 -2 3311 2811 982 251 21 11 chr11 46723913 46724299 -104059254 - MLT1J LTR MaLR -87 424 3 563 292 110 71 chr11 46724361 46724874 -104058679 + L2 LINE L2 2342 2884 -388 2251 113 6 3 chr11 46724874 46725185 -104058368 - AluSx SINE Alu 0 312 1 563 292 110 71 chr11 46725185 46725308 -104058245 + L2 LINE L2 2884 3001 -271 315 171 26 66 chr11 46726019 46726095 -104057458 + L1MCa LINE L1 1995 2067 -4359 * 351 224 10 71 chr11 46726072 46726170 -104057383 + L1MC4 LINE L1 6892 6983 -1339 2238 115 0 10 chr11 46726196 46726491 -104057062 - AluSx SINE Alu -20 292 1 398 291 12 55 chr11 46726537 46726702 -104056851 + MIR3 SINE MIR 40 197 -11 312 256 55 42 chr11 46726749 46727017 -104056536 - MLT1I LTR MaLR -2 407 72 320 232 36 80 chr11 46727721 46727833 -104055720 - MIR SINE MIR -19 243 137 320 237 65 11 chr11 46727921 46728014 -104055539 + LTR67 LTR ERVL 352 449 -108 308 314 46 23 chr11 46728140 46728315 -104055238 + L2 LINE L2 2550 2728 -586 182 194 0 0 chr11 46728557 46728588 -104054965 + MIR SINE MIR 217 247 -15 204 224 52 0 chr11 46728591 46728649 -104054904 + (AATTG)n Simple_repeat Simple_repeat 1 61 0 377 312 3 85 chr11 46728719 46729001 -104054552 + MER102a DNA MER1_type 62 320 -10 215 265 239 0 chr11 46729023 46729140 -104054413 - MIR3 SINE MIR -62 146 2 253 284 130 25 chr11 46729795 46729826 -104053727 + L2 LINE L2 2689 2715 -599 2448 67 0 22 chr11 46729826 46730141 -104053412 + AluY SINE Alu 3 310 -1 253 284 130 25 chr11 46730141 46730271 -104053282 + L2 LINE L2 2715 2867 -447 330 227 0 0 chr11 46730290 46730356 -104053197 - L2 LINE L2 -1 3312 3247 219 69 0 0 chr11 46730573 46730602 -104052951 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 1010 265 117 27 chr11 46730603 46730783 -104052770 - L2 LINE L2 -12 3301 3139 708 194 0 0 chr11 46730783 46730907 -104052646 + FLAM_A SINE Alu 1 124 -9 2006 152 0 10 chr11 46730914 46731216 -104052337 + AluJb SINE Alu 1 299 -13 1010 265 117 27 chr11 46731216 46731549 -104052004 - L2 LINE L2 -179 3134 2725 1216 219 29 78 chr11 46732021 46732395 -104051158 + MLT1A2 LTR MaLR 19 374 0 311 151 16 143 chr11 46732395 46732451 -104051102 - Charlie7 DNA MER1_type -1 2611 2578 1824 188 3 0 chr11 46732451 46732744 -104050809 + AluJo SINE Alu 5 298 -14 311 151 16 143 chr11 46732744 46732813 -104050740 - Charlie7 DNA MER1_type -34 2578 2502 310 231 41 41 chr11 46732819 46732940 -104050613 - Charlie7 DNA MER1_type -2457 155 35 219 69 0 0 chr11 46733005 46733034 -104050519 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 306 244 146 0 chr11 46733217 46733299 -104050254 + L2 LINE L2 3220 3313 0 252 0 0 0 chr11 46733880 46733908 -104049645 + (TG)n Simple_repeat Simple_repeat 2 29 0 288 321 12 0 chr11 46733913 46733997 -104049556 + GA-rich Low_complexity Low_complexity 2 86 0 295 275 92 17 chr11 46734068 46734188 -104049365 + MIR3 SINE MIR 2 130 -78 236 283 26 53 chr11 46734787 46734900 -104048653 - MIR3 SINE MIR -96 112 3 180 0 0 0 chr11 46734913 46734933 -104048620 + (GCCTG)n Simple_repeat Simple_repeat 2 21 0 278 254 0 0 chr11 46734939 46735002 -104048551 + MIR SINE MIR 84 146 -62 208 284 167 10 chr11 46735506 46735608 -104047945 - MIR SINE MIR -113 149 32 1840 192 32 35 chr11 46735618 46735993 -104047560 - MLT1A2 LTR MaLR 0 374 1 211 284 104 0 chr11 46736230 46736297 -104047256 + MIR SINE MIR 108 181 -81 228 154 77 46 chr11 46737286 46737351 -104046202 - MIR SINE MIR -1 261 195 493 303 20 20 chr11 46737604 46737756 -104045797 - MIR SINE MIR -55 207 56 2398 77 0 0 chr11 46738203 46738502 -104045051 + AluSg SINE Alu 1 299 -11 282 116 0 0 chr11 46738816 46738859 -104044694 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 378 290 57 8 chr11 46738877 46739001 -104044552 - L2 LINE L2 -18 3254 3125 614 307 100 17 chr11 46739035 46739325 -104044228 + L2 LINE L2 3000 3313 0 1994 111 0 7 chr11 46739478 46739913 -104043640 + AluSg SINE Alu 3 435 0 193 159 0 45 chr11 46739917 46739961 -104043592 - L2 LINE L2 -340 2973 2932 514 303 28 22 chr11 46740108 46740286 -104043267 + MIR SINE MIR 77 255 -7 1801 171 10 3 chr11 46740286 46740595 -104042958 + AluJo SINE Alu 1 311 -1 217 297 31 0 chr11 46741568 46741632 -104041921 + MIR SINE MIR 78 143 -65 247 324 72 18 chr11 46741726 46741837 -104041716 + MIR SINE MIR 108 224 -38 265 314 0 39 chr11 46741924 46742026 -104041527 + L2 LINE L2 3122 3219 -94 1188 285 57 19 chr11 46742056 46742560 -104040993 - LTR33A LTR ERVL -4 519 29 242 317 24 0 chr11 46743377 46743459 -104040094 + L2 LINE L2 3186 3269 -3 1778 152 4 0 chr11 46744179 46744449 -104039104 - AluSx SINE Alu -39 273 3 28 0 0 0 chr11 46744554 46744582 -104038971 + AT_rich Low_complexity Low_complexity 1 28 0 192 267 0 0 chr11 46744582 46744642 -104038911 + L2 LINE L2 2989 3048 -224 511 461 8 75 chr11 46744764 46745018 -104038535 + MIR SINE MIR 26 262 0 1770 184 3 0 chr11 46745027 46745337 -104038216 - AluJo SINE Alu -1 311 1 191 276 13 26 chr11 46745858 46745934 -104037619 + MIR SINE MIR 108 182 -80 197 181 193 0 chr11 46746312 46746395 -104037158 + MIR3 SINE MIR 58 156 -52 2118 93 0 14 chr11 46746583 46746874 -104036679 - AluSg SINE Alu -21 289 3 306 224 15 0 chr11 46747926 46747993 -104035560 - MER113 DNA MER1_type? -123 398 331 426 250 19 0 chr11 46748689 46748793 -104034760 + MIR SINE MIR 35 140 -122 359 193 59 0 chr11 46748910 46749029 -104034524 + (TA)n Simple_repeat Simple_repeat 2 127 0 370 268 144 7 chr11 46749031 46749184 -104034369 - MIR SINE MIR -64 198 25 1652 184 7 10 chr11 46749246 46749556 -104033997 + AluJb SINE Alu 4 312 0 368 186 24 32 chr11 46749559 46749683 -104033870 + GA-rich Low_complexity Low_complexity 3 125 0 421 351 69 10 chr11 46750308 46750510 -104033043 + MIR SINE MIR 48 261 -1 28 0 0 0 chr11 46751803 46751831 -104031722 + AT_rich Low_complexity Low_complexity 1 28 0 563 284 45 0 chr11 46751839 46752015 -104031538 + L1ME3 LINE L1 5976 6159 -3 223 315 222 9 chr11 46752279 46752387 -104031166 + MIR SINE MIR 58 188 -74 315 323 47 16 chr11 46753217 46753344 -104030209 + MIR SINE MIR 22 152 -56 2150 113 0 3 chr11 46753446 46753746 -104029807 - AluSx SINE Alu -13 299 1 185 229 14 57 chr11 46753840 46753910 -104029643 + MIR SINE MIR 183 249 -13 189 107 0 0 chr11 46754117 46754145 -104029408 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1492 153 71 0 chr11 46754154 46754409 -104029144 - AluJb SINE Alu -39 273 1 2060 115 3 13 chr11 46754877 46754901 -104028652 - AluSx SINE Alu -11 301 278 243 0 0 0 chr11 46754901 46754928 -104028625 + (TG)n Simple_repeat Simple_repeat 1 27 0 2060 115 3 13 chr11 46754928 46755207 -104028346 - AluSx SINE Alu -34 278 1 301 290 120 10 chr11 46755589 46755689 -104027864 + MIR SINE MIR 36 146 -62 194 288 0 17 chr11 46755725 46755784 -104027769 - L2 LINE L2 -2 3270 3213 300 235 15 0 chr11 46755855 46755923 -104027630 - L2 LINE L2 -212 3060 2992 337 294 194 17 chr11 46756278 46756458 -104027095 + MIR SINE MIR 20 231 -31 367 318 132 16 chr11 46757314 46757503 -104026050 - MIR SINE MIR -4 258 48 552 297 16 16 chr11 46758112 46758297 -104025256 + L2 LINE L2 1146 1330 -1984 621 214 14 14 chr11 46760149 46760294 -104023259 - MIR SINE MIR -69 193 49 1017 213 55 74 chr11 46761446 46761640 -104021913 + L2 LINE L2 2952 3148 -165 594 222 33 72 chr11 46761640 46761820 -104021733 + MER69A DNA AcHobo 1 173 -4 1017 213 55 74 chr11 46761820 46761910 -104021643 + L2 LINE L2 3148 3230 -83 2208 110 7 0 chr11 46761910 46762210 -104021343 - AluSx SINE Alu -10 302 1 1017 213 55 74 chr11 46762210 46762290 -104021263 + L2 LINE L2 3230 3310 -3 402 325 89 82 chr11 46762349 46762776 -104020777 + L2 LINE L2 2843 3272 0 201 204 37 19 chr11 46762836 46762890 -104020663 - MIR3 SINE MIR -1 207 153 263 143 0 0 chr11 46762966 46763008 -104020545 + MER4-int LTR ERV1 1111 1152 -5446 474 271 29 7 chr11 46763162 46763302 -104020251 - MIR3 SINE MIR -7 201 59 320 257 93 43 chr11 46763807 46763947 -104019606 - L1ME4a LINE L1 0 6121 5975 386 358 130 7 chr11 46763961 46764246 -104019307 - L2 LINE L2 -39 3233 2914 414 0 0 0 chr11 46764431 46764477 -104019076 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 31 26 0 0 chr11 46764496 46764534 -104019019 + AT_rich Low_complexity Low_complexity 1 38 0 391 300 43 36 chr11 46764788 46764928 -104018625 - MLT1K LTR MaLR -350 238 98 373 242 45 70 chr11 46764931 46765088 -104018465 + L1ME3 LINE L1 5944 6096 -66 2036 117 7 0 chr11 46765129 46765427 -104018126 + AluSx SINE Alu 3 302 -10 1771 165 0 22 chr11 46765427 46765743 -104017810 + AluJo SINE Alu 3 311 -1 330 340 177 0 chr11 46766387 46766590 -104016963 + MIR SINE MIR 3 241 -21 1728 173 0 13 chr11 46767111 46767417 -104016136 - AluJo SINE Alu -10 302 1 180 143 0 0 chr11 46767434 46767462 -104016091 + L2 LINE L2 3223 3250 -22 1898 155 36 41 chr11 46767560 46767947 -104015606 - MLT1B LTR MaLR -5 385 1 1829 147 0 20 chr11 46768824 46769123 -104014430 + AluSx SINE Alu 1 293 -19 926 242 26 26 chr11 46769910 46770141 -104013412 - MIR SINE MIR -12 250 20 638 200 86 0 chr11 46770159 46770299 -104013254 + MER3 DNA MER1_type 45 196 -13 231 260 39 48 chr11 46770319 46770423 -104013130 + L1ME LINE L1 5522 5624 -497 449 300 67 22 chr11 46770461 46770641 -104012912 - MIR SINE MIR -46 216 29 236 195 0 0 chr11 46770982 46771023 -104012530 + MIR SINE MIR 116 156 -106 383 248 177 0 chr11 46771903 46772016 -104011537 - MIR SINE MIR -79 183 51 286 310 26 9 chr11 46772653 46772766 -104010787 - MIR3 SINE MIR -3 205 91 204 306 77 60 chr11 46773165 46773348 -104010205 - MIR SINE MIR -12 250 65 183 42 0 0 chr11 46773663 46773687 -104009866 + (T)n Simple_repeat Simple_repeat 1 24 0 600 284 0 6 chr11 46775369 46775531 -104008022 + MIR SINE MIR 38 198 -64 201 235 59 0 chr11 46775546 46775597 -104007956 - MIR SINE MIR -8 254 201 219 244 200 35 chr11 46775744 46775859 -104007694 + L2 LINE L2 3164 3297 -16 380 216 22 112 chr11 46776434 46776568 -104006985 - L2 LINE L2 -1 3271 3150 510 252 66 45 chr11 46777115 46777340 -104006213 + MIR SINE MIR 10 245 -17 356 293 40 0 chr11 46777365 46777464 -104006089 + L2 LINE L2 3143 3245 -27 256 236 0 0 chr11 46777474 46777529 -104006024 - L2 LINE L2 -1 3271 3217 22 0 0 0 chr11 46777542 46777564 -104005989 + AT_rich Low_complexity Low_complexity 1 22 0 183 198 87 119 chr11 46777844 46777970 -104005583 + MIR SINE MIR 106 227 -35 327 260 281 7 chr11 46778026 46778172 -104005381 + MER5A DNA MER1_type 4 189 0 193 219 148 26 chr11 46778172 46778258 -104005295 + MIR SINE MIR 68 160 -68 1604 155 30 26 chr11 46779159 46779462 -104004091 - AluJb SINE Alu -8 304 1 218 308 135 10 chr11 46779484 46779588 -104003965 - MIR SINE MIR -40 222 106 426 308 60 38 chr11 46779646 46779831 -104003722 - MIR SINE MIR -64 198 10 328 264 115 46 chr11 46779936 46780110 -104003443 - MLT1L LTR MaLR -9 606 421 386 304 34 27 chr11 46780113 46780261 -104003292 - L2 LINE L2 -21 3292 3144 235 213 41 49 chr11 46780261 46780297 -104003256 + (TATATG)n Simple_repeat Simple_repeat 2 37 -85 1537 185 52 73 chr11 46780297 46780665 -104002888 + MER46B DNA MER2_type 2 236 0 235 213 41 49 chr11 46780665 46780750 -104002803 + (TATATG)n Simple_repeat Simple_repeat 37 122 0 578 219 183 0 chr11 46780755 46780974 -104002579 - L2 LINE L2 -148 3165 2907 716 307 60 43 chr11 46780990 46781410 -104002143 - MLT1L LTR MaLR -186 429 3 1002 285 86 31 chr11 46782083 46782455 -104001098 - MLT1K LTR MaLR -14 574 175 180 0 0 0 chr11 46782455 46782475 -104001078 + (GGGTG)n Simple_repeat Simple_repeat 2 21 0 1002 285 86 31 chr11 46782475 46782523 -104001030 - MLT1K LTR MaLR -413 175 131 308 271 71 50 chr11 46782850 46782956 -104000597 + MIR SINE MIR 32 143 -119 2155 145 49 22 chr11 46782956 46783321 -104000232 + THE1C LTR MaLR 1 375 0 308 271 71 50 chr11 46783321 46783354 -104000199 + MIR SINE MIR 143 174 -88 888 157 79 28 chr11 46783544 46783722 -103999831 + MER53 DNA DNA 1 187 -2 291 164 147 69 chr11 46784531 46784647 -103998906 + MIR SINE MIR 46 170 -92 1163 266 71 9 chr11 46784883 46785221 -103998332 - MLT1J LTR MaLR -152 359 1 1590 249 64 47 chr11 46785702 46786280 -103997273 - MLT1K LTR MaLR 0 588 1 466 232 88 16 chr11 46786409 46786534 -103997019 + MIR SINE MIR 16 149 -113 427 313 56 25 chr11 46787455 46787640 -103995913 + MIR SINE MIR 3 195 -62 830 196 98 5 chr11 46788896 46789090 -103994463 - LTR16C LTR ERVL -6 485 274 1345 209 64 72 chr11 46789476 46789850 -103993703 + MLT1A2 LTR MaLR 4 374 0 552 269 64 6 chr11 46789855 46789987 -103993566 + MIR SINE MIR 28 172 -90 1139 242 62 72 chr11 46789987 46790540 -103993013 - MLT1H LTR MaLR -2 547 1 552 269 64 6 chr11 46790540 46790563 -103992990 + MIR SINE MIR 172 192 -70 895 202 44 0 chr11 46792626 46792809 -103990744 + MER58A DNA MER1_type 34 224 0 719 227 187 5 chr11 46792829 46793027 -103990526 + MIR SINE MIR 17 250 -12 884 131 0 8 chr11 46793070 46793200 -103990353 - FLAM_C SINE Alu -4 129 1 228 265 0 0 chr11 46793284 46793333 -103990220 + MER5A DNA MER1_type 56 104 -85 228 179 0 0 chr11 46793455 46793494 -103990059 + MER81 DNA DNA 75 113 -1 303 250 35 35 chr11 46794330 46794446 -103989107 + MIR3 SINE MIR 15 130 -78 218 200 0 22 chr11 46795499 46795544 -103988009 + CT-rich Low_complexity Low_complexity 2 45 0 2136 174 28 48 chr11 46795597 46796034 -103987519 - MSTA LTR MaLR 0 428 1 532 276 37 8 chr11 46797007 46797141 -103986412 - MIR SINE MIR -78 184 47 645 283 79 17 chr11 46798457 46798697 -103984856 + L2 LINE L2 2815 3069 -244 3071 251 99 65 chr11 46798780 46798942 -103984611 - HAL1 LINE L1 -6 2501 2346 2167 105 0 0 chr11 46798942 46799218 -103984335 - AluSc SINE Alu -3 306 31 3071 251 99 65 chr11 46799218 46799791 -103983762 - HAL1 LINE L1 -161 2346 1794 913 244 57 0 chr11 46799791 46800000 -103983553 - MER58A DNA MER1_type -3 221 1 3071 251 99 65 chr11 46800000 46801135 -103982418 - HAL1 LINE L1 -713 1794 566 274 284 60 23 chr11 46801179 46801397 -103982156 - HAL1 LINE L1 -2172 335 110 493 264 0 16 chr11 46801705 46801834 -103981719 - L2 LINE L2 -3 3310 3184 196 158 53 0 chr11 46801978 46802016 -103981537 - L2 LINE L2 -345 2969 2930 1539 264 69 34 chr11 46802017 46802570 -103980983 - MLT1E LTR MaLR 0 593 22 1312 134 5 0 chr11 46802575 46802761 -103980792 - AluJo SINE Alu -9 303 117 28639 50 2 11 chr11 46802761 46807090 -103976463 - L1PA5 LINE L1 -14 6140 1855 2153 122 23 3 chr11 46807090 46807394 -103976159 + AluY SINE Alu 2 311 0 28639 50 2 11 chr11 46807394 46807661 -103975892 - L1PA5 LINE L1 -4299 1855 1587 1034 275 151 55 chr11 46808698 46809257 -103974296 - L2 LINE L2 -4 3309 2805 1671 183 26 20 chr11 46809257 46809563 -103973990 + AluJo SINE Alu 1 308 -4 1034 275 151 55 chr11 46809563 46809943 -103973610 - L2 LINE L2 -508 2805 2269 261 219 0 0 chr11 46810092 46810165 -103973388 + (CAT)n Simple_repeat Simple_repeat 3 75 0 217 226 0 29 chr11 46810256 46810358 -103973195 + (CACCAT)n Simple_repeat Simple_repeat 4 102 0 289 292 16 49 chr11 46810383 46810568 -103972985 + (CACCAT)n Simple_repeat Simple_repeat 2 180 0 1076 122 156 10 chr11 46810699 46810904 -103972649 + MLT2A1 LTR ERVL 178 412 -32 313 76 63 0 chr11 46810904 46810983 -103972570 + (TA)n Simple_repeat Simple_repeat 2 85 0 40423 67 3 5 chr11 46811029 46816248 -103967305 + HERVL-A1 LTR ERVL 1 5210 -444 451 202 39 19 chr11 46816921 46817025 -103966528 + MIR SINE MIR 51 156 -106 2282 88 0 3 chr11 46817158 46817441 -103966112 - AluSq SINE Alu -10 303 22 647 248 164 26 chr11 46817696 46817922 -103965631 - MIR SINE MIR -1 261 5 204 280 93 27 chr11 46818005 46818080 -103965473 + MER91C DNA MER1_type 25 104 -36 248 268 29 72 chr11 46818681 46818819 -103964734 - MER113 DNA MER1_type? -40 481 350 313 188 34 17 chr11 46818992 46819092 -103964461 - MIR SINE MIR -87 121 19 * 1100 248 115 49 chr11 46819047 46819513 -103964040 + L2 LINE L2 2798 3312 -1 755 188 40 97 chr11 46819516 46819623 -103963930 - MER113 DNA MER1_type? -221 300 188 2511 80 0 3 chr11 46819623 46819934 -103963619 - AluY SINE Alu -1 310 1 755 188 40 97 chr11 46819934 46819996 -103963557 - MER113 DNA MER1_type? -333 188 124 1787 163 0 37 chr11 46819996 46820296 -103963257 - AluJb SINE Alu -22 290 2 755 188 40 97 chr11 46820296 46820423 -103963130 - MER113 DNA MER1_type? -397 124 20 333 331 45 8 chr11 46820445 46820578 -103962975 - MIR SINE MIR -55 153 16 225 356 33 0 chr11 46820687 46820777 -103962776 + L2 LINE L2 3221 3313 0 255 214 32 135 chr11 46821513 46821639 -103961914 - MIR SINE MIR -80 128 16 181 309 0 0 chr11 46821747 46821802 -103961751 + MIR SINE MIR 113 167 -95 297 345 18 9 chr11 46822384 46822497 -103961056 - MIR SINE MIR -58 150 37 4127 147 8 2 chr11 46822631 46823262 -103960291 + MER41B LTR ERV1 1 635 0 2225 79 55 7 chr11 46823720 46824011 -103959542 - AluSx SINE Alu -7 305 1 384 226 43 13 chr11 46824676 46824785 -103958768 + MIR SINE MIR 11 121 -87 346 276 47 24 chr11 46825004 46825131 -103958422 - MIR3 SINE MIR -77 131 2 1685 120 33 7 chr11 46826297 46826571 -103956982 + MLT2A1 LTR ERVL 124 404 -40 24 0 0 0 chr11 46826571 46826595 -103956958 + AT_rich Low_complexity Low_complexity 1 24 0 788 49 63 23 chr11 46826600 46826940 -103956613 + (TA)n Simple_repeat Simple_repeat 1 353 0 264 155 35 17 chr11 46826952 46827010 -103956543 + MLT2A1 LTR ERVL 386 444 0 * 517 236 40 72 chr11 46827010 46827162 -103956391 + MER2 DNA MER2_type 107 250 -95 2059 136 20 3 chr11 46827162 46827457 -103956096 - AluSx SINE Alu -12 300 1 517 236 40 72 chr11 46827457 46827551 -103956002 + MER2 DNA MER2_type 250 345 0 305 337 0 0 chr11 46827552 46827635 -103955918 + (CAG)n Simple_repeat Simple_repeat 1 83 0 216 235 0 0 chr11 46827739 46827807 -103955746 + (ATG)n Simple_repeat Simple_repeat 1 68 0 389 216 0 53 chr11 46827840 46828030 -103955523 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 421 248 9 9 chr11 46828105 46828210 -103955343 - MLT1J LTR MaLR -160 351 247 532 152 0 29 chr11 46828316 46828421 -103955132 - L1PB1 LINE L1 -1 6150 6049 1307 212 40 72 chr11 46828892 46829269 -103954284 + MLT1A1 LTR MaLR 1 365 0 570 310 10 25 chr11 46829380 46829583 -103953970 - MLT1A2 LTR MaLR -174 200 1 2413 107 7 0 chr11 46830087 46830397 -103953156 + AluSx SINE Alu 1 312 0 1868 225 8 0 chr11 46830576 46830936 -103952617 + MLT1A1 LTR MaLR 1 363 -2 204 164 66 0 chr11 46830976 46831037 -103952516 + (TA)n Simple_repeat Simple_repeat 1 65 0 318 263 141 10 chr11 46831048 46831147 -103952406 + L2 LINE L2 3195 3306 -7 673 280 34 65 chr11 46831407 46831700 -103951853 + MLT1I LTR MaLR 106 389 -20 2110 128 0 20 chr11 46832091 46832395 -103951158 - AluSx SINE Alu -9 303 6 2412 96 0 0 chr11 46832401 46832704 -103950849 - AluSx SINE Alu -9 303 1 268 181 32 85 chr11 46832931 46833025 -103950528 - MIR SINE MIR -76 132 44 578 265 60 71 chr11 46833172 46833440 -103950113 - MER102b DNA MER1_type -3 338 74 648 142 118 0 chr11 46833646 46833773 -103949780 + Tigger1 DNA MER2_type 1 142 -2276 2044 130 17 7 chr11 46833788 46834081 -103949472 - AluSx SINE Alu -16 296 1 1004 151 38 5 chr11 46834092 46834277 -103949276 + Tigger1 DNA MER2_type 2227 2417 -1 35 54 0 0 chr11 46834422 46834478 -103949075 + AT_rich Low_complexity Low_complexity 1 56 0 2129 127 0 10 chr11 46834485 46834810 -103948743 + AluSx SINE Alu 1 312 0 394 237 119 25 chr11 46835778 46835896 -103947657 + MIR SINE MIR 65 193 -69 2176 113 0 10 chr11 46836004 46836306 -103947247 + AluSc SINE Alu 1 297 -12 1579 261 153 9 chr11 46836471 46836980 -103946573 + MLT1G1 LTR MaLR 1 583 -7 890 166 195 23 chr11 46837470 46837792 -103945761 + MSTC LTR MaLR 1 425 -3 193 241 190 0 chr11 46837807 46837865 -103945688 - L2 LINE L2 -3 3310 3242 1434 284 65 35 chr11 46837894 46837994 -103945559 + MER115 DNA AcHobo 118 213 -480 1857 138 7 0 chr11 46837994 46838320 -103945233 - AluJb SINE Alu 0 328 1 1434 284 65 35 chr11 46838320 46838768 -103944785 + MER115 DNA AcHobo 213 684 -9 2563 121 4 74 chr11 46839040 46839527 -103944026 - LTR32 LTR ERVL -5 466 14 405 98 49 0 chr11 46839654 46839715 -103943838 + MER5A DNA MER1_type 1 64 -125 246 345 12 48 chr11 46839846 46840011 -103943542 - MIR SINE MIR -10 252 94 778 196 113 0 chr11 46840096 46840264 -103943289 - MER5A DNA MER1_type 0 189 3 430 296 72 13 chr11 46840777 46840929 -103942624 + MIR SINE MIR 102 262 0 270 222 111 0 chr11 46842769 46842841 -103940712 - L2 LINE L2 -10 3262 3183 416 363 59 4 chr11 46843726 46843982 -103939571 - L2 LINE L2 -358 2956 2687 209 254 36 118 chr11 46845240 46845350 -103938203 + MIR SINE MIR 36 136 -72 614 282 172 18 chr11 46845600 46845827 -103937726 + MIR SINE MIR 1 262 0 227 255 255 0 chr11 46846220 46846314 -103937239 + L2 LINE L2 3155 3272 0 255 323 0 0 chr11 46846974 46847039 -103936514 + MIR SINE MIR 34 98 -110 1074 194 43 17 chr11 46847145 46847377 -103936176 + MIR SINE MIR 15 252 -10 1958 146 17 0 chr11 46847396 46847697 -103935856 - AluSx SINE Alu -4 308 3 327 280 20 10 chr11 46847743 46847843 -103935710 + MIR SINE MIR 23 123 -85 319 247 146 0 chr11 46848130 46848219 -103935334 + L1ME4a LINE L1 6019 6120 -1 376 133 244 33 chr11 46848551 46848641 -103934912 + MIR SINE MIR 96 204 -58 275 288 0 0 chr11 46849035 46849101 -103934452 + MIR SINE MIR 197 262 0 255 279 13 13 chr11 46849700 46849779 -103933774 + MIR SINE MIR 170 248 -14 380 359 155 8 chr11 46850151 46850396 -103933157 - L3 LINE CR1 -2 1575 1295 480 374 17 14 chr11 46850668 46850962 -103932591 - L1ME4a LINE L1 -195 5926 5632 1042 148 28 6 chr11 46851382 46851564 -103931989 - MER5A DNA MER1_type 0 189 4 257 354 61 0 chr11 46851773 46851872 -103931681 - MIR SINE MIR -56 152 48 613 279 66 6 chr11 46852195 46852378 -103931175 - MIR SINE MIR -12 250 57 184 284 42 53 chr11 46852379 46852474 -103931079 - L2 LINE L2 -2768 546 453 308 304 16 16 chr11 46852539 46852664 -103930889 + MIR SINE MIR 20 144 -64 274 264 76 82 chr11 46852720 46852886 -103930667 - MIR SINE MIR -63 145 31 321 337 88 26 chr11 46853520 46853713 -103929840 + MIR SINE MIR 51 255 -7 322 267 59 37 chr11 46853851 46853986 -103929567 + MIR SINE MIR 11 148 -114 276 288 160 24 chr11 46856295 46856390 -103927163 - MIR SINE MIR -84 178 61 1940 135 51 0 chr11 46856390 46856686 -103926867 + AluSx SINE Alu 1 311 -1 276 288 160 24 chr11 46856686 46856715 -103926838 - MIR SINE MIR -201 61 37 680 283 72 32 chr11 46857160 46857411 -103926142 + MIR SINE MIR 2 262 0 196 290 87 14 chr11 46857477 46857546 -103926007 + L2 LINE L2 3105 3178 -94 217 309 83 12 chr11 46857861 46857945 -103925608 - MER5A DNA MER1_type -43 146 57 186 358 41 24 chr11 46858033 46858156 -103925397 + MIR3 SINE MIR 38 162 -46 314 311 76 23 chr11 46858446 46858578 -103924975 - MIR3 SINE MIR -67 141 3 255 233 81 0 chr11 46858969 46859055 -103924498 + MIR3 SINE MIR 101 193 -15 448 239 104 2 chr11 46859579 46859705 -103923848 + MIR SINE MIR 31 167 -41 505 275 36 42 chr11 46860059 46860226 -103923327 - MIR SINE MIR -50 212 47 2223 109 0 3 chr11 46860227 46860530 -103923023 - AluSq SINE Alu -9 304 3 180 0 0 0 chr11 46861216 46861236 -103922317 + (CAT)n Simple_repeat Simple_repeat 2 21 0 486 263 167 16 chr11 46861243 46861429 -103922124 - MIR SINE MIR -10 252 39 198 321 84 84 chr11 46861438 46861653 -103921900 - MIR SINE MIR -35 227 13 718 249 67 0 chr11 46862046 46862211 -103921342 + MER5B DNA MER1_type 1 176 -2 1220 186 31 22 chr11 46862385 46862611 -103920942 + AluJb SINE Alu 61 288 -24 505 307 13 7 chr11 46862762 46862912 -103920641 - L2 LINE L2 -2 3311 3161 247 244 267 15 chr11 46862951 46863086 -103920467 - MER5B DNA MER1_type -9 169 1 241 300 110 73 chr11 46863088 46863629 -103919924 - L2 LINE L2 -247 3066 2412 234 219 0 0 chr11 46863871 46863935 -103919618 + (TCCA)n Simple_repeat Simple_repeat 1 64 0 1764 72 0 5 chr11 46864284 46864505 -103919048 - AluY SINE Alu -90 221 2 659 215 50 82 chr11 46864559 46864700 -103918853 - MER58C DNA MER1_type -2205 215 82 2333 80 3 13 chr11 46864700 46865011 -103918542 + AluY SINE Alu 1 308 -3 659 215 50 82 chr11 46865011 46865088 -103918465 - MER58C DNA MER1_type -2338 82 4 229 250 121 60 chr11 46865608 46865724 -103917829 + MIR3 SINE MIR 36 158 -50 408 205 154 0 chr11 46865986 46866103 -103917450 + MIR SINE MIR 50 184 -78 2209 93 20 0 chr11 46866190 46866492 -103917061 - AluSq SINE Alu -5 308 1 355 317 97 0 chr11 46867194 46867339 -103916214 - L3 LINE CR1 -31 1546 1388 239 217 33 171 chr11 46867378 46867530 -103916023 + L3 LINE CR1 1369 1499 -78 365 246 123 23 chr11 46868227 46868357 -103915196 + L1ME4a LINE L1 5789 5931 -190 198 0 0 0 chr11 46868368 46868390 -103915163 + (CA)n Simple_repeat Simple_repeat 2 23 0 351 264 124 25 chr11 46868394 46868515 -103915038 + L1ME4a LINE L1 5983 6115 -6 252 0 0 0 chr11 46868762 46868790 -103914763 + (CCCCAG)n Simple_repeat Simple_repeat 3 30 0 493 279 41 0 chr11 46868860 46868982 -103914571 + MIR SINE MIR 71 197 -65 518 273 176 10 chr11 46869868 46870073 -103913480 + L1ME4a LINE L1 5865 6103 -18 891 148 0 15 chr11 46870161 46870296 -103913257 + FLAM_C SINE Alu 1 133 0 410 196 9 54 chr11 46872508 46872620 -103910933 - MER96B DNA MER1_type? -187 230 124 1852 104 11 0 chr11 46872620 46872880 -103910673 - AluSq SINE Alu -1 312 50 1512 170 30 33 chr11 46873363 46873663 -103909890 - AluJb SINE Alu -13 299 1 439 262 118 57 chr11 46873708 46873971 -103909582 - L2 LINE L2 -2 3270 2992 233 340 10 20 chr11 46874733 46874833 -103908720 + MIR SINE MIR 86 184 -78 730 274 75 5 chr11 46874935 46875147 -103908406 - MIR SINE MIR -4 258 32 328 249 16 111 chr11 46875897 46876086 -103907467 + MER5B DNA MER1_type 8 178 0 223 257 0 27 chr11 46876112 46876186 -103907367 - MIR SINE MIR -76 132 61 610 279 14 0 chr11 46876240 46876387 -103907166 - MIR SINE MIR -109 153 5 725 266 60 40 chr11 46876426 46876678 -103906875 + MIR SINE MIR 1 257 -5 318 281 187 6 chr11 46876696 46876852 -103906701 - MIR3 SINE MIR -63 145 8 260 420 49 0 chr11 46877079 46877284 -103906269 + MIR SINE MIR 48 262 0 933 295 111 15 chr11 46878049 46878507 -103905046 + L2 LINE L2 2811 3312 -1 253 313 226 5 chr11 46878542 46878750 -103904803 + MIR SINE MIR 9 262 0 505 265 57 73 chr11 46878842 46879087 -103904466 - L2 LINE L2 -8 3305 3065 705 270 52 24 chr11 46879852 46880063 -103903490 + MIR SINE MIR 46 262 0 232 276 0 13 chr11 46880282 46880358 -103903195 - MLT1L LTR MaLR -186 429 355 1399 147 103 15 chr11 46880433 46880706 -103902847 + AluJb SINE Alu 6 302 -10 343 290 14 41 chr11 46881890 46882035 -103901518 - MIR3 SINE MIR -65 143 3 305 272 43 0 chr11 46882731 46882823 -103900730 + MIR SINE MIR 59 154 -108 553 252 129 24 chr11 46882824 46883034 -103900519 + MER46C DNA MER2_type 2 233 -105 355 284 10 10 chr11 46883359 46883461 -103900092 + MIR SINE MIR 23 124 -84 240 319 28 0 chr11 46884229 46884301 -103899252 + L3 LINE CR1 427 500 -1077 406 296 158 71 chr11 46884416 46884727 -103898826 + L3 LINE CR1 1233 1570 -7 412 287 23 8 chr11 46884832 46884961 -103898592 + MIR SINE MIR 16 146 -116 546 164 253 34 chr11 46884979 46885047 -103898506 + MER45A DNA AcHobo 1 53 -1528 2179 134 0 0 chr11 46885047 46885353 -103898200 - AluSx SINE Alu -6 306 1 546 164 253 34 chr11 46885353 46885430 -103898123 + MER45A DNA AcHobo 53 178 0 249 273 105 14 chr11 46885648 46885791 -103897762 - MLT1K LTR MaLR -354 234 79 215 290 194 11 chr11 46886306 46886399 -103897154 + MIR SINE MIR 16 125 -137 892 284 11 23 chr11 46886430 46886694 -103896859 + MIR SINE MIR 2 262 0 23 0 0 0 chr11 46886754 46886777 -103896776 + AT_rich Low_complexity Low_complexity 1 23 0 2111 115 0 16 chr11 46886842 46887155 -103896398 - AluY SINE Alu -3 308 1 979 126 0 0 chr11 46887760 46888072 -103895481 + AluSx SINE Alu 1 312 0 1161 129 0 0 chr11 46888220 46888390 -103895163 - AluSg/x SINE Alu 0 312 143 1257 270 63 48 chr11 46888660 46889321 -103894232 - L2 LINE L2 -7 3306 2647 409 312 83 10 chr11 46889914 46890119 -103893434 + L1ME3 LINE L1 5940 6159 -3 237 132 0 0 chr11 46890127 46890165 -103893388 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 198 291 188 8 chr11 46890824 46890941 -103892612 + MIR SINE MIR 98 235 -27 2374 74 0 0 chr11 46891507 46891803 -103891750 + AluSx SINE Alu 11 306 -6 673 272 87 28 chr11 46891912 46892139 -103891414 - MIR SINE MIR -24 238 6 258 193 227 84 chr11 46893077 46893196 -103890357 + MIR SINE MIR 71 152 -56 2510 42 3 10 chr11 46893701 46894010 -103889543 + AluY SINE Alu 1 307 -4 1877 128 7 0 chr11 46895041 46895314 -103888239 + AluSx SINE Alu 36 310 -2 247 302 81 12 chr11 46895636 46895722 -103887831 - MER5A DNA MER1_type -37 152 61 193 317 79 0 chr11 46895643 46895744 -103887809 + MER5A DNA MER1_type 54 162 -27 * 223 292 15 0 chr11 46896000 46896065 -103887488 + MIR SINE MIR 32 97 -111 278 250 23 34 chr11 46896166 46896254 -103887299 - MIR SINE MIR -163 99 13 183 80 0 0 chr11 46897443 46897468 -103886085 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 386 257 37 9 chr11 46897471 46897580 -103885973 - L2 LINE L2 -13 3300 3189 223 263 0 26 chr11 46897616 46897692 -103885861 + (CA)n Simple_repeat Simple_repeat 2 75 0 205 340 120 0 chr11 46897932 46898032 -103885521 + MIR SINE MIR 102 213 -49 2110 139 35 41 chr11 46898809 46899175 -103884378 - THE1B LTR MaLR 0 364 1 221 330 58 29 chr11 46899464 46899567 -103883986 - MIR SINE MIR -63 199 94 345 250 142 25 chr11 46899804 46899924 -103883629 - L2 LINE L2 0 3272 3139 1774 207 130 51 chr11 46900727 46901234 -103882319 + MLT1H LTR MaLR 1 547 -2 612 299 31 59 chr11 46901248 46901502 -103882051 - MIR SINE MIR 0 262 16 214 195 0 0 chr11 46901747 46901788 -103881765 - L2 LINE L2 -4 3268 3228 395 328 24 31 chr11 46901836 46902028 -103881525 - MIR SINE MIR -62 146 9 292 226 10 78 chr11 46902728 46902830 -103880723 + MIR SINE MIR 50 144 -64 270 291 47 11 chr11 46902946 46903044 -103880509 - MIR SINE MIR -90 118 16 419 228 53 9 chr11 46903429 46903543 -103880010 + MIR SINE MIR 108 226 -36 517 293 15 8 chr11 46904059 46904192 -103879361 + L2 LINE L2 3180 3313 0 306 276 6 104 chr11 46904308 46904406 -103879147 + MER5A DNA MER1_type 43 120 -69 2088 95 3 50 chr11 46904406 46904723 -103878830 - AluSp SINE Alu -11 302 1 306 276 6 104 chr11 46904723 46904787 -103878766 + MER5A DNA MER1_type 120 189 0 2407 85 3 0 chr11 46905523 46905830 -103877723 - AluSp SINE Alu -5 308 1 356 281 62 34 chr11 46905945 46906091 -103877462 + L2 LINE L2 3123 3272 0 206 339 48 24 chr11 46906382 46906506 -103877047 - L2 LINE L2 -842 2472 2346 1801 153 32 62 chr11 46907293 46907348 -103876205 - MER46B DNA MER2_type -2495 236 181 180 0 0 0 chr11 46907348 46907368 -103876185 + (TA)n Simple_repeat Simple_repeat 2 21 0 1981 130 0 3 chr11 46907368 46907652 -103875901 - AluSq SINE Alu -28 285 3 1801 153 32 62 chr11 46907652 46907967 -103875586 - MER46B DNA MER2_type -2548 183 1 25 31 0 0 chr11 46908271 46908303 -103875250 + AT_rich Low_complexity Low_complexity 1 32 0 354 278 78 17 chr11 46908389 46908504 -103875049 + L2 LINE L2 3180 3301 -12 294 274 150 9 chr11 46909229 46909342 -103874211 + MIR SINE MIR 37 165 -97 497 281 8 8 chr11 47010170 47010291 -103773262 + MIR SINE MIR 32 152 -110 191 200 35 12 chr11 47010349 47010434 -103773119 + CT-rich Low_complexity Low_complexity 1 87 0 233 200 75 50 chr11 47010472 47010552 -103773001 - MIR SINE MIR -58 204 123 183 80 0 0 chr11 47010729 47010754 -103772799 + (TCCCC)n Simple_repeat Simple_repeat 5 29 0 * 671 205 0 6 chr11 47010751 47010912 -103772641 + CT-rich Low_complexity Low_complexity 3 162 0 219 326 74 15 chr11 47011859 47011994 -103771559 + MIR SINE MIR 13 155 -107 22 70 0 0 chr11 47012424 47012467 -103771086 + AT_rich Low_complexity Low_complexity 1 43 0 389 252 87 24 chr11 47012945 47013072 -103770481 + MIR3 SINE MIR 7 141 -67 491 249 35 30 chr11 47013321 47013490 -103770063 + MER117 DNA MER1_type 4 173 -24 795 230 47 29 chr11 47013925 47014203 -103769350 + L1ME3A LINE L1 5880 6162 -8 2577 50 0 0 chr11 47014229 47014529 -103769024 + AluY SINE Alu 1 300 -11 297 256 194 8 chr11 47014551 47014680 -103768873 + Charlie8 DNA MER1_type 92 244 -2173 444 291 30 22 chr11 47014823 47014957 -103768596 + MIR SINE MIR 45 179 -83 1782 151 14 21 chr11 47014964 47015249 -103768304 + AluJo SINE Alu 9 291 -21 260 279 35 12 chr11 47015859 47015945 -103767608 + MIR SINE MIR 96 183 -79 336 238 32 71 chr11 47016443 47016569 -103766984 + MIR SINE MIR 25 145 -63 2068 134 34 0 chr11 47016609 47016900 -103766653 + AluSx SINE Alu 1 301 -11 483 350 25 20 chr11 47017399 47017599 -103765954 - MIR SINE MIR -53 209 9 435 356 77 0 chr11 47017632 47017826 -103765727 + MIR SINE MIR 13 221 -41 2613 62 0 0 chr11 47018112 47018419 -103765134 - AluY SINE Alu -4 307 1 246 213 0 0 chr11 47018576 47018623 -103764930 - MIR SINE MIR -71 137 91 287 214 0 0 chr11 47019324 47019380 -103764173 - MIR SINE MIR -88 120 65 462 260 147 17 chr11 47019821 47019998 -103763555 + MIR SINE MIR 26 225 -37 2125 122 0 30 chr11 47020124 47020427 -103763126 + AluSx SINE Alu 6 299 -13 1067 169 52 28 chr11 47020514 47020859 -103762694 + LTR54 LTR ERV1 1 407 -103 428 171 0 0 chr11 47020861 47020937 -103762616 - AluJ/FRAM SINE Alu -8 304 229 502 100 64 18 chr11 47020937 47021047 -103762506 + LTR54B LTR ERV1 382 496 -2 219 323 0 0 chr11 47021050 47021115 -103762438 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 959 212 60 34 chr11 47021115 47021533 -103762020 - LTR37B LTR ERV1 0 468 1 2289 93 0 17 chr11 47021613 47021913 -103761640 - AluSg SINE Alu -15 295 1 304 187 0 22 chr11 47024409 47024500 -103759053 + GA-rich Low_complexity Low_complexity 1 89 0 213 39 0 0 chr11 47024787 47024813 -103758740 + (GGGA)n Simple_repeat Simple_repeat 2 27 0 2649 181 19 14 chr11 47024871 47025391 -103758162 - L1MB3 LINE L1 0 6183 5661 696 171 28 40 chr11 47025400 47025576 -103757977 - L1MB3 LINE L1 -2061 4085 3912 * 1660 125 33 116 chr11 47025566 47025823 -103757730 - L1M3 LINE L1 -513 5667 5390 229 147 0 0 chr11 47025823 47025857 -103757696 - U2 snRNA snRNA -153 35 2 1731 178 0 14 chr11 47025857 47026169 -103757384 - AluJb SINE Alu 0 308 1 1660 125 33 116 chr11 47026169 47026536 -103757017 - L1M3 LINE L1 -788 5392 5067 * 2295 187 21 23 chr11 47026531 47027045 -103756508 - L1M3 LINE L1 -1995 4151 3639 627 321 25 25 chr11 47027106 47027349 -103756204 - MIR SINE MIR -16 246 4 311 299 11 34 chr11 47028040 47028217 -103755336 + (TCCA)n Simple_repeat Simple_repeat 4 176 0 284 355 55 51 chr11 47028254 47028471 -103755082 - L2 LINE L2 -86 3186 2969 442 231 0 0 chr11 47028921 47029029 -103754524 + L1ME3A LINE L1 6055 6162 -8 486 230 23 58 chr11 47029256 47029430 -103754123 + MER104 DNA Tc2 3 170 -10 408 331 45 6 chr11 47029439 47029617 -103753936 - MIR SINE MIR -27 235 51 246 261 0 15 chr11 47030733 47030798 -103752755 + L1P4 LINE L1 5766 5829 -345 184 83 0 0 chr11 47031057 47031081 -103752472 - MIR SINE MIR -156 106 83 282 29 0 0 chr11 47031096 47031131 -103752422 + (TG)n Simple_repeat Simple_repeat 2 36 0 323 0 0 0 chr11 47031397 47031434 -103752119 - tRNA-Val-GTG tRNA tRNA -39 37 1 391 238 115 25 chr11 47031484 47031606 -103751947 + MIR SINE MIR 43 175 -87 2393 131 47 47 chr11 47032329 47032757 -103750796 - MSTA LTR MaLR 0 428 1 359 248 159 19 chr11 47033590 47033747 -103749806 + MIR3 SINE MIR 30 208 0 528 260 52 49 chr11 47033952 47034198 -103749355 - MIR SINE MIR -6 256 14 249 343 89 0 chr11 47034328 47034474 -103749079 + MIR SINE MIR 88 246 -16 550 289 26 7 chr11 47035274 47035426 -103748127 + MIR SINE MIR 28 182 -80 372 182 71 0 chr11 47035456 47035555 -103747998 + MARNA DNA Mariner 432 537 -49 7176 211 35 33 chr11 47036096 47037372 -103746181 - L1M4 LINE L1 -1002 5144 3861 2282 110 3 7 chr11 47037372 47037673 -103745880 - AluSg1 SINE Alu -9 300 1 7176 211 35 33 chr11 47037673 47038378 -103745175 - L1M4 LINE L1 -2285 3861 3159 251 308 60 45 chr11 47038383 47038516 -103745037 + MIR SINE MIR 48 182 -80 1719 256 101 28 chr11 47038539 47039654 -103743899 - L2 LINE L2 0 3313 2122 180 0 0 0 chr11 47039818 47039838 -103743715 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 1021 197 249 47 chr11 47040074 47040098 -103743455 - MLT2B1 LTR ERVL -37 483 465 952 181 241 35 chr11 47040098 47040380 -103743173 - MER2 DNA MER2_type -4 340 1 1021 197 249 47 chr11 47040380 47040716 -103742837 - MLT2B1 LTR ERVL -55 465 50 612 260 79 16 chr11 47040723 47040977 -103742576 - MER97c DNA MER1_type? -11 1079 810 452 167 130 0 chr11 47040992 47041100 -103742453 + MER2 DNA MER2_type 54 175 -170 2174 116 10 0 chr11 47041125 47041428 -103742125 - AluSp SINE Alu -1 312 7 1358 229 83 37 chr11 47041446 47041612 -103741941 - MER97a DNA MER1_type? -498 396 239 2501 80 3 10 chr11 47041612 47041923 -103741630 + AluSp SINE Alu 1 309 -4 1358 229 83 37 chr11 47041923 47042131 -103741422 - MER97a DNA MER1_type? -655 239 5 255 270 0 32 chr11 47043094 47043157 -103740396 + polypyrimidine Low_complexity Low_complexity 2 62 0 754 163 10 74 chr11 47043593 47043795 -103739758 + MER53 DNA DNA 1 189 0 241 270 67 0 chr11 47044713 47044802 -103738751 - MIR SINE MIR -65 143 49 292 306 145 0 chr11 47044822 47044946 -103738607 + MIR SINE MIR 46 187 -75 440 261 121 13 chr11 47045090 47045247 -103738306 + MIR SINE MIR 12 185 -77 211 333 0 0 chr11 47046298 47046364 -103737189 - L2 LINE L2 -5 3308 3243 258 267 175 17 chr11 47046830 47046950 -103736603 - MER117 DNA MER1_type -28 169 31 276 298 0 36 chr11 47047035 47047119 -103736434 + MIR3 SINE MIR 108 188 -20 225 253 0 63 chr11 47048116 47048211 -103735342 + (CATA)n Simple_repeat Simple_repeat 1 89 0 220 241 19 0 chr11 47048914 47048968 -103734585 + (TTCA)n Simple_repeat Simple_repeat 2 56 0 274 271 57 57 chr11 47049119 47049259 -103734294 + MIR SINE MIR 32 171 -91 3149 211 50 30 chr11 47050186 47050736 -103732817 - L1ME2 LINE L1 -9 6155 5617 2354 101 10 3 chr11 47050736 47051043 -103732510 + AluSg SINE Alu 1 309 -1 3149 211 50 30 chr11 47051043 47051306 -103732247 - L1ME2 LINE L1 -547 5617 5318 2112 126 10 0 chr11 47051306 47051599 -103731954 - AluSx SINE Alu -16 296 1 3149 211 50 30 chr11 47051599 47051660 -103731893 - L1ME2 LINE L1 -846 5318 5260 760 202 75 5 chr11 47051650 47051838 -103731715 + L1ME2 LINE L1 5033 5233 -913 * 2544 78 0 0 chr11 47051862 47052168 -103731385 - AluSg SINE Alu -4 306 1 223 374 0 10 chr11 47052346 47052445 -103731108 + L2 LINE L2 2959 3056 -257 279 345 21 28 chr11 47053060 47053205 -103730348 + L2 LINE L2 3168 3311 -2 303 328 25 8 chr11 47053231 47053353 -103730200 - MIR3 SINE MIR -40 168 45 401 325 74 0 chr11 47054369 47054532 -103729021 + MIR SINE MIR 68 242 -20 210 184 0 0 chr11 47054689 47054727 -103728826 - MIR SINE MIR -114 148 111 2328 98 7 0 chr11 47055094 47055399 -103728154 - AluSq SINE Alu -4 309 3 658 260 115 5 chr11 47055651 47055851 -103727702 - MIR SINE MIR -18 244 23 468 271 56 0 chr11 47056033 47056177 -103727376 + MIR SINE MIR 103 254 -8 236 200 67 0 chr11 47056466 47056511 -103727042 - MIR SINE MIR -91 171 124 623 219 163 0 chr11 47056718 47056896 -103726657 + MER3 DNA MER1_type 3 209 0 2112 120 30 0 chr11 47056914 47057214 -103726339 - AluSg SINE Alu -1 309 1 308 277 129 0 chr11 47057879 47057995 -103725558 + MIR SINE MIR 63 192 -67 663 220 0 0 chr11 47058612 47058785 -103724768 + (TG)n Simple_repeat Simple_repeat 1 173 0 665 226 3 0 chr11 47058801 47059092 -103724461 + (TG)n Simple_repeat Simple_repeat 1 292 0 277 222 48 0 chr11 47059228 47059291 -103724262 + MIR SINE MIR 109 174 -88 395 266 86 16 chr11 47060386 47060514 -103723039 - L2 LINE L2 0 3272 3136 22 0 0 0 chr11 47060567 47060589 -103722964 + AT_rich Low_complexity Low_complexity 1 22 0 311 286 40 76 chr11 47061163 47061387 -103722166 - L2 LINE L2 -229 3043 2828 477 178 33 0 chr11 47061585 47061675 -103721878 - AluSp SINE Alu -95 218 126 329 256 12 0 chr11 47061890 47061972 -103721581 + MER81 DNA DNA 1 83 -31 351 247 0 12 chr11 47062011 47062092 -103721461 + MIR SINE MIR 107 186 -76 198 191 0 0 chr11 47062766 47062813 -103720740 + (TG)n Simple_repeat Simple_repeat 2 48 0 2224 121 0 0 chr11 47062850 47063147 -103720406 + AluSx SINE Alu 1 297 -15 695 249 46 50 chr11 47063150 47063391 -103720162 + MIR SINE MIR 21 260 -2 216 0 0 0 chr11 47063534 47063558 -103719995 + (CCCCCA)n Simple_repeat Simple_repeat 2 25 0 329 282 78 14 chr11 47063795 47063937 -103719616 + MIR SINE MIR 15 165 -97 236 270 40 14 chr11 47063948 47064022 -103719531 - L2 LINE L2 -650 2664 2589 185 335 25 80 chr11 47065041 47065241 -103718312 - MIR3 SINE MIR -5 203 15 224 302 63 71 chr11 47065630 47065756 -103717797 - MIR SINE MIR -66 196 72 493 264 14 14 chr11 47066346 47066494 -103717059 - MER103 DNA DNA -11 155 8 585 230 40 88 chr11 47066697 47066971 -103716582 - MIR SINE MIR -1 261 1 706 194 48 6 chr11 47068109 47068274 -103715279 - MIR SINE MIR -82 180 9 2177 98 0 66 chr11 47068298 47068615 -103714938 - AluSx SINE Alu -16 296 1 309 299 37 19 chr11 47068742 47068849 -103714704 - MIR SINE MIR -63 145 37 244 296 141 0 chr11 47069495 47069566 -103713987 + MER2 DNA MER2_type 1 81 -264 257 242 61 0 chr11 47069619 47069685 -103713868 + L1MC5 LINE L1 7838 7907 -54 300 333 118 0 chr11 47069828 47069963 -103713590 + L2 LINE L2 3122 3272 0 419 301 70 0 chr11 47070066 47070209 -103713344 + MIR SINE MIR 12 164 -98 1907 145 3 3 chr11 47070219 47070501 -103713052 + AluJb SINE Alu 12 293 -19 674 265 137 23 chr11 47070686 47070992 -103712561 - L2 LINE L2 -342 2972 2632 288 0 0 0 chr11 47071068 47071100 -103712453 + (CA)n Simple_repeat Simple_repeat 1 32 0 280 335 102 42 chr11 47071460 47071794 -103711759 - L2 LINE L2 -2 3270 2917 255 254 18 107 chr11 47072508 47072553 -103711000 + L2 LINE L2 3155 3202 -111 2278 73 37 27 chr11 47072553 47072853 -103710700 - AluSg SINE Alu -7 303 1 255 254 18 107 chr11 47072853 47072976 -103710577 + L2 LINE L2 3202 3308 -5 234 150 0 0 chr11 47072977 47073017 -103710536 + (GGGA)n Simple_repeat Simple_repeat 1 40 0 1475 222 86 9 chr11 47074076 47074495 -103709058 - MLT1C LTR MaLR 0 467 17 2334 100 17 0 chr11 47074497 47074798 -103708755 - AluSx SINE Alu -6 306 1 635 214 8 0 chr11 47075540 47075671 -103707882 + FLAM_C SINE Alu 2 133 0 2363 113 6 0 chr11 47075692 47076003 -103707550 + AluSq SINE Alu 1 313 0 405 291 16 31 chr11 47076115 47076242 -103707311 + MIR SINE MIR 15 139 -123 632 241 98 15 chr11 47076547 47076750 -103706803 - MIR SINE MIR -14 248 29 608 267 134 17 chr11 47077416 47077648 -103705905 - MIR SINE MIR -2 260 2 183 271 21 0 chr11 47077783 47077831 -103705722 + L2 LINE L2 3189 3237 -35 252 278 238 8 chr11 47078188 47078314 -103705239 + MIR SINE MIR 102 256 -6 252 314 116 0 chr11 47078385 47078506 -103705047 - MIR SINE MIR -117 145 11 2324 188 80 0 chr11 47078580 47079039 -103704514 - L1MB5 LINE L1 -8 6166 5665 1950 140 10 32 chr11 47079039 47079353 -103704200 - AluJb SINE Alu -5 307 1 2324 188 80 0 chr11 47079353 47079378 -103704175 - L1MB5 LINE L1 -509 5665 5643 378 0 0 0 chr11 47079570 47079612 -103703941 + (CA)n Simple_repeat Simple_repeat 2 43 0 213 39 0 0 chr11 47079711 47079737 -103703816 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2424 90 0 7 chr11 47079897 47080197 -103703356 - AluSq SINE Alu -15 298 1 501 211 0 9 chr11 47080598 47080712 -103702841 + MIR SINE MIR 20 132 -130 333 290 193 0 chr11 47081732 47081908 -103701645 + MIR SINE MIR 49 258 -4 219 192 115 39 chr11 47082004 47082082 -103701471 + MIR SINE MIR 33 116 -92 232 242 0 48 chr11 47082902 47082964 -103700589 - MIR3 SINE MIR -39 169 111 498 75 0 0 chr11 47083086 47083153 -103700400 + (TCCA)n Simple_repeat Simple_repeat 3 69 0 261 260 0 26 chr11 47083422 47083499 -103700054 - L2 LINE L2 -323 2990 2916 282 284 0 49 chr11 47083993 47084074 -103699479 - L2 LINE L2 -2 3311 3235 305 224 26 0 chr11 47084479 47084555 -103698998 + MIR3 SINE MIR 82 159 -49 406 320 36 26 chr11 47084557 47084751 -103698802 + MER117 DNA MER1_type 2 197 0 281 271 146 0 chr11 47085615 47085711 -103697842 + MIR SINE MIR 47 156 -106 296 144 67 89 chr11 47086032 47086122 -103697431 - MLT1H LTR MaLR -367 182 95 203 222 111 0 chr11 47086238 47086301 -103697252 - MIR3 SINE MIR -53 155 86 219 325 61 55 chr11 47086306 47086469 -103697084 - MIR SINE MIR -41 221 58 346 320 176 0 chr11 47087250 47087403 -103696150 + MIR3 SINE MIR 20 199 -9 183 205 0 0 chr11 47088135 47088174 -103695379 + T-rich Low_complexity Low_complexity 1 39 0 376 272 162 7 chr11 47088934 47089070 -103694483 + MIR SINE MIR 36 192 -70 2098 175 43 22 chr11 47089070 47089487 -103694066 + MSTB LTR MaLR 1 426 0 324 262 16 63 chr11 47089600 47089726 -103693827 - MIR3 SINE MIR -6 202 83 330 253 66 0 chr11 47090009 47090100 -103693453 + MIR SINE MIR 68 164 -98 302 313 71 9 chr11 47090369 47090580 -103692973 - L2 LINE L2 -1403 1911 1688 643 224 196 40 chr11 47090720 47091046 -103692507 - MLT1J1 LTR MaLR -7 439 63 211 227 0 0 chr11 47091355 47091399 -103692154 + MIR SINE MIR 76 119 -143 2643 184 36 51 chr11 47091535 47092177 -103691376 - LTR27 LTR ERV1 -2 634 3 448 288 112 9 chr11 47093672 47093887 -103689666 - MIR SINE MIR -8 254 18 2433 86 0 10 chr11 47094568 47094872 -103688681 + AluSp SINE Alu 1 301 -12 654 217 212 5 chr11 47094963 47095147 -103688406 - MIR SINE MIR -24 238 17 625 261 150 75 chr11 47097000 47097450 -103686103 + L2 LINE L2 2201 2616 -697 4186 184 40 6 chr11 47097450 47098322 -103685231 - L1MC2 LINE L1 -9 6335 5434 625 261 150 75 chr11 47098322 47098892 -103684661 + L2 LINE L2 2616 3313 0 296 305 153 8 chr11 47098930 47099061 -103684492 - MIR SINE MIR -10 252 103 436 246 141 78 chr11 47099136 47099392 -103684161 - Charlie8 DNA MER1_type -2093 324 53 1197 148 0 0 chr11 47099394 47099570 -103683983 + AluSg/x SINE Alu 137 312 0 808 268 154 14 chr11 47100061 47100476 -103683077 - L2 LINE L2 0 3313 2841 234 279 137 29 chr11 47101333 47101537 -103682016 + L2 LINE L2 2865 3090 -182 524 256 43 18 chr11 47101599 47101763 -103681790 + MIR SINE MIR 21 188 -74 216 111 0 0 chr11 47101866 47101902 -103681651 + L2 LINE L2 3028 3063 -209 445 275 138 6 chr11 47103042 47103209 -103680344 + MIR SINE MIR 16 204 -58 377 287 123 41 chr11 47103214 47103482 -103680071 - LTR16A1 LTR ERVL -8 449 160 14666 120 38 3 chr11 47104095 47106430 -103677123 + Tigger1 DNA MER2_type 1 2418 0 1733 196 64 62 chr11 47106472 47106551 -103677002 + MLT1D LTR MaLR 12 89 -416 2618 87 14 0 chr11 47106551 47106908 -103676645 - THE1B LTR MaLR -2 362 1 1733 196 64 62 chr11 47106908 47107314 -103676239 + MLT1D LTR MaLR 89 498 -7 1372 186 75 7 chr11 47107326 47107605 -103675948 + MLT2C1 LTR ERVL 1 298 -99 417 253 49 49 chr11 47108854 47109016 -103674537 - MIR SINE MIR -70 192 31 183 265 41 0 chr11 47109289 47109338 -103674215 + MIR SINE MIR 81 131 -77 639 291 112 40 chr11 47109516 47109662 -103673891 - L2 LINE L2 -13 3300 3166 2087 123 10 3 chr11 47109662 47109954 -103673599 + AluSq SINE Alu 1 294 -19 639 291 112 40 chr11 47109954 47110365 -103673188 - L2 LINE L2 -147 3166 2696 386 354 25 0 chr11 47110381 47110539 -103673014 - MIR3 SINE MIR -11 197 36 191 290 48 0 chr11 47111109 47111171 -103672382 - MIR3 SINE MIR -7 201 137 2804 223 51 59 chr11 47111178 47111580 -103671973 - L1ME3 LINE L1 -7 6155 5751 8639 44 2 3 chr11 47111580 47112652 -103670901 - MER11C LTR ERVK 0 1071 1 2804 223 51 59 chr11 47112652 47113233 -103670320 - L1ME3 LINE L1 -411 5751 5179 530 205 31 15 chr11 47113695 47113842 -103669711 + MIR SINE MIR 105 253 -9 217 281 112 11 chr11 47113852 47113941 -103669612 - L2 LINE L2 -36 3277 3180 458 302 13 13 chr11 47113968 47114117 -103669436 - L2 LINE L2 -204 3068 2920 195 254 18 0 chr11 47114399 47114454 -103669099 + MIR SINE MIR 101 156 -106 725 257 27 27 chr11 47114486 47114708 -103668845 - MIR SINE MIR -26 236 15 327 121 0 0 chr11 47115015 47115073 -103668480 + (TG)n Simple_repeat Simple_repeat 1 58 0 252 350 0 10 chr11 47115317 47115414 -103668139 - MIR SINE MIR -2 260 165 283 308 14 20 chr11 47115542 47115686 -103667867 - L2 LINE L2 -211 3061 2919 268 343 9 9 chr11 47115686 47115794 -103667759 + MIR SINE MIR 3 110 -152 1355 161 67 21 chr11 47115794 47115805 -103667748 - L1MB5 LINE L1 -289 5885 5876 347 125 0 0 chr11 47115805 47115861 -103667692 - L1MB5 LINE L1 -6 6168 6113 1355 161 67 21 chr11 47115861 47116134 -103667419 - L1MB5 LINE L1 -298 5876 5588 207 304 35 35 chr11 47116149 47116264 -103667289 + MIR SINE MIR 122 236 -26 2019 156 0 10 chr11 47116265 47116572 -103666981 - AluSx SINE Alu -8 304 1 389 245 78 29 chr11 47117354 47117553 -103666000 + MIR SINE MIR 28 243 -19 923 246 93 53 chr11 47117703 47118134 -103665419 - LTR16A1 LTR ERVL 0 457 10 391 318 148 11 chr11 47118997 47119186 -103664367 - MIR SINE MIR 0 262 48 295 309 14 36 chr11 47119390 47119529 -103664024 - MIR3 SINE MIR -69 139 4 258 308 31 0 chr11 47120442 47120507 -103663046 + L2 LINE L2 3247 3313 0 646 232 19 0 chr11 47120755 47120910 -103662643 - MIR SINE MIR -86 176 19 223 309 106 52 chr11 47121557 47121906 -103661647 - L2 LINE L2 -556 2758 2391 * 665 263 82 17 chr11 47121894 47122126 -103661427 - MIR SINE MIR 0 262 16 424 329 38 13 chr11 47123161 47123319 -103660234 + MIR3 SINE MIR 41 202 -6 559 250 58 17 chr11 47123905 47124077 -103659476 - MIR SINE MIR -44 218 40 2246 119 0 10 chr11 47124316 47124627 -103658926 - AluSc SINE Alu -1 308 1 180 333 0 0 chr11 47125100 47125151 -103658402 + L2 LINE L2 3263 3313 0 200 189 0 0 chr11 47125268 47125305 -103658248 + CT-rich Low_complexity Low_complexity 3 39 0 228 65 0 0 chr11 47125537 47125568 -103657985 - MIR SINE MIR -66 142 112 213 291 36 45 chr11 47125759 47125869 -103657684 - MIR SINE MIR -83 125 17 386 283 192 6 chr11 47126411 47126588 -103656965 + MIR SINE MIR 2 211 -51 381 224 52 69 chr11 47126833 47127007 -103656546 - MIR3 SINE MIR 0 208 38 558 305 55 25 chr11 47127779 47128015 -103655538 - MIR SINE MIR -10 252 10 567 218 0 16 chr11 47128213 47128337 -103655216 + MIR3 SINE MIR 37 158 -50 994 316 19 0 chr11 47129495 47129808 -103653745 - MLT1K LTR MaLR -115 473 155 221 233 23 30 chr11 47129837 47129970 -103653583 + (TGG)n Simple_repeat Simple_repeat 1 132 0 378 0 0 0 chr11 47130241 47130283 -103653270 + (CA)n Simple_repeat Simple_repeat 1 42 0 430 245 28 0 chr11 47130976 47131082 -103652471 - L2 LINE L2 0 3313 3205 284 284 34 68 chr11 47132202 47132350 -103651203 + MIR SINE MIR 117 259 -3 2444 96 0 0 chr11 47132454 47132755 -103650798 + AluSg SINE Alu 1 301 -9 315 304 27 0 chr11 47132837 47132949 -103650604 - L2 LINE L2 0 3272 3158 427 295 58 23 chr11 47133684 47133857 -103649696 + MIR SINE MIR 80 258 -4 944 160 27 21 chr11 47135538 47135725 -103647828 + MER5A DNA MER1_type 2 189 0 2389 105 0 0 chr11 47135837 47136141 -103647412 - AluSx SINE Alu -8 304 1 227 292 184 16 chr11 47136163 47136401 -103647152 - L2 LINE L2 -266 3006 2725 368 252 136 0 chr11 47137637 47137740 -103645813 - L3 LINE CR1 -89 1488 1372 358 305 64 0 chr11 47137756 47137897 -103645656 + MIR SINE MIR 47 196 -66 1144 218 18 7 chr11 47138515 47138790 -103644763 - L1MB8 LINE L1 0 6178 5901 263 308 48 62 chr11 47138874 47139020 -103644533 - L3 LINE CR1 -15 1562 1419 326 277 96 0 chr11 47139107 47139201 -103644352 - MIR SINE MIR -64 144 42 197 333 0 36 chr11 47139284 47139368 -103644185 - L3 LINE CR1 -200 1377 1297 320 293 30 0 chr11 47139413 47139512 -103644041 - L2 LINE L2 -214 3058 2957 1493 158 115 16 chr11 47139604 47139926 -103643627 - MLT1A1 LTR MaLR -11 354 1 395 270 0 26 chr11 47139935 47140050 -103643503 - L3 LINE CR1 -78 1499 1388 2311 100 0 23 chr11 47140362 47140672 -103642881 - AluSx SINE Alu -9 303 1 661 196 71 42 chr11 47140675 47140843 -103642710 - MLT1B LTR MaLR -217 173 1 416 241 0 0 chr11 47140844 47140931 -103642622 + MIR SINE MIR 155 241 -21 828 223 43 0 chr11 47141045 47141229 -103642324 - MIR SINE MIR 0 262 71 248 266 0 38 chr11 47141436 47141515 -103642038 - L2 LINE L2 -196 3076 3001 351 294 49 0 chr11 47142532 47142642 -103640911 + MIR3 SINE MIR 46 158 -50 449 249 16 3 chr11 47142870 47142997 -103640556 - MIR SINE MIR -63 145 66 203 313 111 10 chr11 47144007 47144106 -103639447 - MIR SINE MIR -17 245 137 * 504 278 65 28 chr11 47144099 47144315 -103639238 + MIR SINE MIR 39 262 0 292 313 30 38 chr11 47144291 47144422 -103639131 - MIR SINE MIR -90 172 43 * 281 288 36 39 chr11 47144770 47144907 -103638646 + MIR3 SINE MIR 23 154 -54 420 331 13 0 chr11 47144909 47145060 -103638493 - L2 LINE L2 -188 3084 2932 329 272 65 22 chr11 47145112 47145204 -103638349 - L1ME4a LINE L1 -2 6119 6024 180 77 0 0 chr11 47146431 47146457 -103637096 + (CA)n Simple_repeat Simple_repeat 1 26 0 279 284 12 0 chr11 47147340 47147421 -103636132 + MIR SINE MIR 82 163 -99 899 224 35 0 chr11 47147421 47147591 -103635962 + MER45A DNA AcHobo 1 176 -2 258 105 0 0 chr11 47147683 47147721 -103635832 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 856 262 158 17 chr11 47147721 47148166 -103635387 - L2 LINE L2 -5 3308 2784 415 335 116 0 chr11 47148806 47148970 -103634583 + MIR SINE MIR 69 251 -11 292 194 15 30 chr11 47149178 47149245 -103634308 + MIR3 SINE MIR 133 198 -10 794 220 35 0 chr11 47149468 47149641 -103633912 + MIR SINE MIR 13 191 -71 195 320 107 0 chr11 47149959 47150034 -103633519 + MIR SINE MIR 112 194 -68 259 330 43 0 chr11 47150537 47150631 -103632922 - MIR SINE MIR -136 126 29 477 0 0 0 chr11 47151030 47151083 -103632470 + (CA)n Simple_repeat Simple_repeat 2 54 0 194 263 53 42 chr11 47151201 47151296 -103632257 - MIR SINE MIR -83 125 30 252 141 241 11 chr11 47151969 47152057 -103631496 - MIR SINE MIR -84 124 4 404 290 9 9 chr11 47152073 47152180 -103631373 - MIR SINE MIR -86 122 16 981 218 71 0 chr11 47152238 47152463 -103631090 + MIR SINE MIR 22 262 0 495 291 89 0 chr11 47153143 47153301 -103630252 - MIR SINE MIR -70 192 21 763 272 32 9 chr11 47153396 47153613 -103629940 + MER58A DNA MER1_type 1 222 -2 289 274 17 68 chr11 47153671 47153788 -103629765 - MIR SINE MIR -48 214 104 245 371 88 26 chr11 47154870 47155064 -103628489 + MIR SINE MIR 57 262 0 232 319 215 21 chr11 47155078 47155269 -103628284 + L3b LINE CR1 1351 1578 -5 761 308 29 17 chr11 47155596 47155836 -103627717 + MIR SINE MIR 16 258 -4 575 282 41 36 chr11 47155848 47156043 -103627510 + MIR SINE MIR 61 256 -6 295 319 162 22 chr11 47156670 47156855 -103626698 + MIR SINE MIR 28 238 -24 240 273 122 72 chr11 47157087 47157226 -103626327 + MIR3 SINE MIR 39 184 -24 1763 135 159 12 chr11 47157306 47157633 -103625920 + THE1C LTR MaLR 1 375 0 330 362 26 7 chr11 47158232 47158384 -103625169 + MER5A DNA MER1_type 7 161 -28 788 255 60 34 chr11 47158676 47158900 -103624653 + Charlie4a DNA MER1_type 3 241 -1720 2339 53 0 62 chr11 47158900 47159223 -103624330 + AluY SINE Alu 1 303 -8 788 255 60 34 chr11 47159223 47159351 -103624202 + Charlie4a DNA MER1_type 241 364 -144 1033 178 6 0 chr11 47159354 47159523 -103624030 + AluJo SINE Alu 7 176 -136 931 123 123 13 chr11 47159771 47159998 -103623555 + L1MA8 LINE L1 6019 6270 -21 2135 129 0 0 chr11 47160084 47160379 -103623174 + AluSx SINE Alu 1 295 -17 345 328 22 9 chr11 47160430 47160659 -103622894 - L1ME4a LINE L1 -295 5826 5595 537 238 6 61 chr11 47160736 47160900 -103622653 - L1MB8 LINE L1 -123 6055 5901 833 187 0 41 chr11 47161012 47161183 -103622370 + FRAM SINE Alu 1 156 -20 398 137 253 0 chr11 47161185 47161280 -103622273 + Charlie4a DNA MER1_type 358 476 -32 351 281 166 6 chr11 47162746 47162914 -103620639 + MIR SINE MIR 21 212 -50 428 207 146 37 chr11 47162967 47163131 -103620422 + MIR3 SINE MIR 17 198 -10 504 302 63 34 chr11 47163591 47163832 -103619721 + MIR SINE MIR 13 253 -9 271 302 61 24 chr11 47164127 47164273 -103619280 - MIR3 SINE MIR -27 181 63 266 306 41 0 chr11 47164655 47164753 -103618800 + MIR3 SINE MIR 82 183 -25 640 301 55 25 chr11 47164899 47165135 -103618418 + MIR SINE MIR 18 260 -2 187 309 18 0 chr11 47166050 47166105 -103617448 + L2 LINE L2 3255 3310 -3 182 219 16 78 chr11 47166204 47166268 -103617285 + MIR SINE MIR 153 212 -50 563 256 17 56 chr11 47166280 47166460 -103617093 + MIR SINE MIR 30 202 -60 231 36 0 0 chr11 47166786 47166814 -103616739 + (CCA)n Simple_repeat Simple_repeat 3 30 0 255 273 0 0 chr11 47166852 47166907 -103616646 + L2 LINE L2 3215 3269 -3 200 208 19 19 chr11 47166907 47166960 -103616593 + (TGGG)n Simple_repeat Simple_repeat 1 53 0 533 253 29 41 chr11 47168039 47168209 -103615344 - L2 LINE L2 0 3313 3146 372 265 0 43 chr11 47168231 47168348 -103615205 + MIR3 SINE MIR 49 160 -48 2315 167 48 12 chr11 47168487 47168900 -103614653 - MSTC LTR MaLR 0 428 1 491 344 33 26 chr11 47169624 47169853 -103613700 - MIR SINE MIR -28 234 6 746 281 88 17 chr11 47170388 47170626 -103612927 + MIR SINE MIR 8 262 0 385 270 175 10 chr11 47170624 47170685 -103612868 - MIR SINE MIR -15 247 197 * 2358 83 3 3 chr11 47170685 47170998 -103612555 - AluSq SINE Alu 0 313 1 385 270 175 10 chr11 47170998 47171136 -103612417 - MIR SINE MIR -65 197 15 506 255 58 27 chr11 47171545 47171733 -103611820 - MIR3 SINE MIR -11 197 4 662 240 56 21 chr11 47171758 47171991 -103611562 + MIR SINE MIR 21 261 -1 540 234 8 23 chr11 47172239 47172367 -103611186 - MIR SINE MIR -122 140 15 199 269 77 39 chr11 47172831 47172909 -103610644 + MIR SINE MIR 4 84 -178 444 261 6 97 chr11 47173164 47173340 -103610213 - L2 LINE L2 -187 3085 2926 912 209 82 0 chr11 47173799 47174005 -103609548 + MIR SINE MIR 37 259 -3 184 376 73 30 chr11 47174097 47174262 -103609291 + MIR3 SINE MIR 20 191 -17 207 0 0 0 chr11 47174615 47174638 -103608915 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 454 285 40 13 chr11 47174870 47175021 -103608532 + MIR SINE MIR 68 222 -40 340 154 9 0 chr11 47175054 47175132 -103608421 - L1MA7 LINE L1 0 6312 6226 21 0 0 0 chr11 47175137 47175158 -103608395 + AT_rich Low_complexity Low_complexity 1 21 0 335 273 53 67 chr11 47175391 47175541 -103608012 + MIR SINE MIR 51 198 -64 225 244 0 0 chr11 47175656 47175701 -103607852 + L2 LINE L2 3223 3267 -5 198 156 0 0 chr11 47175975 47176007 -103607546 + MIR SINE MIR 112 143 -65 845 302 22 4 chr11 47176049 47176281 -103607272 - MIR SINE MIR -16 246 11 335 269 119 13 chr11 47176914 47177097 -103606456 + MIR SINE MIR 31 246 -16 204 270 0 0 chr11 47177424 47177487 -103606066 + CT-rich Low_complexity Low_complexity 2 64 0 211 343 50 20 chr11 47177561 47177660 -103605893 + MIR SINE MIR 45 146 -62 2283 87 3 0 chr11 47177775 47178073 -103605480 + AluSq SINE Alu 1 299 -14 1993 121 7 4 chr11 47178453 47178853 -103604700 + AluJb SINE Alu 1 401 0 343 300 93 14 chr11 47178878 47179018 -103604535 - MIR SINE MIR -48 214 64 481 239 138 6 chr11 47179266 47179425 -103604128 + MIR3 SINE MIR 17 197 -11 391 292 35 35 chr11 47180031 47180175 -103603378 - MIR3 SINE MIR -19 189 46 252 388 78 0 chr11 47180697 47180826 -103602727 - L2 LINE L2 -2 3270 3132 297 276 11 60 chr11 47181955 47182039 -103601514 + CT-rich Low_complexity Low_complexity 1 88 -88 1836 153 4 0 chr11 47182039 47182320 -103601233 - AluJb SINE Alu -19 293 12 297 276 11 60 chr11 47182320 47182420 -103601133 + CT-rich Low_complexity Low_complexity 88 176 0 228 293 27 13 chr11 47182466 47182541 -103601012 - MIR SINE MIR -111 97 22 437 296 33 10 chr11 47182619 47182931 -103600622 + (TG)n Simple_repeat Simple_repeat 1 319 0 30 27 0 0 chr11 47183515 47183552 -103600001 + AT_rich Low_complexity Low_complexity 1 37 0 444 250 11 0 chr11 47184155 47184247 -103599306 + L2 LINE L2 3160 3252 -20 791 259 20 32 chr11 47184280 47184527 -103599026 + MIR SINE MIR 7 250 -12 473 322 82 29 chr11 47184611 47184856 -103598697 + MIR SINE MIR 2 259 -3 208 333 14 0 chr11 47185772 47185844 -103597709 + MIR SINE MIR 79 151 -111 206 308 98 50 chr11 47186533 47186715 -103596838 - MIR SINE MIR -50 212 17 355 306 63 36 chr11 47187164 47187386 -103596167 - L2 LINE L2 -178 3094 2867 215 267 48 67 chr11 47187676 47187781 -103595772 + MER91B DNA MER1_type 1 103 -87 520 252 20 0 chr11 47189375 47189522 -103594031 - MER117 DNA MER1_type -47 150 1 421 263 30 30 chr11 47189598 47189731 -103593822 - MIR SINE MIR -96 166 34 400 302 95 50 chr11 47190777 47191019 -103592534 - L2 LINE L2 -51 3262 3010 213 220 85 0 chr11 47191297 47191356 -103592197 + MIR SINE MIR 70 133 -75 812 276 189 5 chr11 47191358 47191775 -103591778 + MLT1J LTR MaLR 3 496 -15 2019 130 3 7 chr11 47192121 47192421 -103591132 - AluSx SINE Alu -13 299 1 281 327 230 17 chr11 47192579 47192830 -103590723 - L2 LINE L2 -663 2651 2455 2271 103 0 0 chr11 47192830 47193131 -103590422 + AluSx SINE Alu 1 301 -11 281 327 230 17 chr11 47193131 47193240 -103590313 - L2 LINE L2 -859 2455 2214 308 325 114 0 chr11 47193585 47193751 -103589802 + MIR SINE MIR 8 192 -70 288 0 0 0 chr11 47194101 47194133 -103589420 + (TG)n Simple_repeat Simple_repeat 1 32 0 858 262 26 9 chr11 47194231 47194464 -103589089 - MIR SINE MIR 0 262 26 1272 33 0 0 chr11 47194753 47194904 -103588649 + L1PA5 LINE L1 6001 6151 -3 180 0 0 0 chr11 47195020 47195040 -103588513 + (GCCTG)n Simple_repeat Simple_repeat 5 24 0 298 337 52 35 chr11 47195177 47195349 -103588204 + MER5A DNA MER1_type 8 182 -7 265 203 0 31 chr11 47195948 47196012 -103587541 + (TCTCTG)n Simple_repeat Simple_repeat 2 63 0 302 247 0 0 chr11 47196326 47196399 -103587154 - Charlie8 DNA MER1_type -2254 163 91 215 271 0 0 chr11 47197001 47197049 -103586504 + C-rich Low_complexity Low_complexity 3 50 0 206 232 36 0 chr11 47197612 47197668 -103585885 - L2 LINE L2 0 3272 3215 188 182 0 0 chr11 47197813 47197846 -103585707 + MIR SINE MIR 112 144 -118 328 290 20 10 chr11 47198381 47198481 -103585072 + MIR SINE MIR 13 113 -149 2328 77 0 7 chr11 47198506 47198804 -103584749 + AluSc SINE Alu 1 296 -13 224 228 70 26 chr11 47198837 47198928 -103584625 - MIR SINE MIR -83 125 29 209 306 99 9 chr11 47199795 47199906 -103583647 - MIR3 SINE MIR -87 121 1 628 297 156 34 chr11 47200170 47200554 -103582999 - L3 LINE CR1 -15 1562 1132 357 219 73 15 chr11 47200634 47200771 -103582782 + MER117 DNA MER1_type 7 151 -46 185 0 0 39 chr11 47201321 47201347 -103582206 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 296 138 15 0 chr11 47204303 47204368 -103579185 + (TG)n Simple_repeat Simple_repeat 2 67 0 239 329 57 0 chr11 47205905 47205975 -103577578 + MIR3 SINE MIR 82 155 -53 186 274 98 20 chr11 47206483 47206585 -103576968 + L2 LINE L2 3137 3246 -26 603 246 105 48 chr11 47207845 47208073 -103575480 + MIR SINE MIR 19 259 -3 216 274 104 57 chr11 47209115 47209221 -103574332 - L2 LINE L2 -26 3287 3177 194 361 69 0 chr11 47209270 47209342 -103574211 - MIR SINE MIR -67 195 119 2298 259 42 6 chr11 47210281 47210945 -103572608 - L1ME1 LINE L1 -22 6144 5457 244 231 220 0 chr11 47211003 47211094 -103572459 + MIR SINE MIR 61 171 -91 331 344 38 13 chr11 47211251 47211408 -103572145 + MIR SINE MIR 63 223 -39 736 307 28 20 chr11 47211430 47211681 -103571872 + MIR SINE MIR 9 261 -1 282 111 16 32 chr11 47211952 47212015 -103571538 + (CA)n Simple_repeat Simple_repeat 2 63 0 567 89 76 0 chr11 47212026 47212183 -103571370 + (CA)n Simple_repeat Simple_repeat 1 169 0 517 85 57 34 chr11 47212214 47212390 -103571163 + (CA)n Simple_repeat Simple_repeat 1 180 0 721 76 58 6 chr11 47212405 47212576 -103570977 + (CA)n Simple_repeat Simple_repeat 1 180 0 605 330 13 22 chr11 47213102 47213326 -103570227 + MIR SINE MIR 9 230 -32 229 234 149 43 chr11 47214390 47214484 -103569069 + L2 LINE L2 3210 3313 0 521 290 85 15 chr11 47214730 47214930 -103568623 + MIR SINE MIR 47 260 -2 477 261 85 8 chr11 47215399 47215529 -103568024 - MIR SINE MIR -78 184 45 276 333 72 28 chr11 47216076 47216255 -103567298 + MIR SINE MIR 8 197 -58 274 279 221 19 chr11 47216769 47216923 -103566630 + MIR3 SINE MIR 2 186 -22 210 191 0 0 chr11 47217550 47217597 -103565956 + GA-rich Low_complexity Low_complexity 3 49 0 743 291 75 12 chr11 47217767 47218008 -103565545 + MIR SINE MIR 7 262 0 311 298 43 21 chr11 47218241 47218382 -103565171 + MIR3 SINE MIR 5 148 -60 829 249 146 53 chr11 47218390 47218807 -103564746 + L2 LINE L2 2851 3306 -7 22 89 0 0 chr11 47219722 47219767 -103563786 + GC_rich Low_complexity Low_complexity 1 45 0 501 58 0 0 chr11 47220851 47220920 -103562633 + (CAGGG)n Simple_repeat Simple_repeat 3 71 0 454 262 40 16 chr11 47221399 47221525 -103562028 - MIR SINE MIR -1 261 133 458 273 0 0 chr11 47222176 47222275 -103561278 + MIR SINE MIR 12 110 -152 212 205 0 0 chr11 47222440 47222479 -103561074 + MIR SINE MIR 213 251 -11 463 340 75 26 chr11 47222861 47223126 -103560427 + L3 LINE CR1 1300 1577 0 380 267 28 83 chr11 47223231 47223411 -103560142 - L2 LINE L2 -38 3234 3065 2339 57 0 0 chr11 47223486 47223799 -103559754 - AluY SINE Alu 0 313 1 270 290 68 80 chr11 47223862 47224024 -103559529 + MIR SINE MIR 103 262 0 187 282 42 14 chr11 47224097 47224168 -103559385 + MIR SINE MIR 144 216 -46 192 125 0 0 chr11 47224246 47224278 -103559275 + (TGGGGG)n Simple_repeat Simple_repeat 2 33 0 693 241 81 30 chr11 47224715 47224951 -103558602 + MIR SINE MIR 14 261 -1 542 315 70 19 chr11 47225596 47225809 -103557744 + MIR SINE MIR 33 256 -6 243 304 88 10 chr11 47226397 47226499 -103557054 + MIR SINE MIR 109 218 -44 408 311 23 23 chr11 47226855 47226987 -103556566 - MIR SINE MIR -34 228 97 240 250 17 0 chr11 47227067 47227127 -103556426 - MER5A DNA MER1_type -43 146 86 242 328 125 8 chr11 47227169 47227297 -103556256 + MER5A DNA MER1_type 41 183 -6 646 307 68 11 chr11 47227316 47227580 -103555973 - L2 LINE L2 -84 3229 2951 195 97 32 81 chr11 47227914 47227976 -103555577 + (CA)n Simple_repeat Simple_repeat 1 59 0 2060 118 0 40 chr11 47228005 47228326 -103555227 + AluSx SINE Alu 4 311 -1 651 296 83 26 chr11 47228330 47228560 -103554993 + MIR SINE MIR 19 261 -1 293 316 158 26 chr11 47228513 47228665 -103554888 - MIR SINE MIR 0 262 91 * 329 349 9 0 chr11 47229364 47229470 -103554083 + MIR SINE MIR 50 156 -106 296 344 65 39 chr11 47229805 47230401 -103553152 + L1M4 LINE L1 4177 4788 -1358 422 307 132 11 chr11 47230514 47230703 -103552850 + MIR SINE MIR 51 262 0 321 337 37 58 chr11 47231910 47232153 -103551400 + L2 LINE L2 2357 2594 -720 543 230 14 40 chr11 47232265 47232413 -103551140 - L1PB4 LINE L1 -2 6164 6021 302 293 116 14 chr11 47232517 47232713 -103550840 - MIR SINE MIR 0 262 44 2255 108 0 0 chr11 47232973 47233279 -103550274 + AluSg SINE Alu 1 306 -4 773 177 108 0 chr11 47233373 47233559 -103549994 + L1MD3 LINE L1 7788 7993 -2 388 291 20 46 chr11 47233598 47233749 -103549804 + MER117 DNA MER1_type 3 149 -48 318 254 262 16 chr11 47233903 47234029 -103549524 + L1ME3 LINE L1 5907 6063 -99 882 271 14 14 chr11 47234263 47234484 -103549069 + MIR SINE MIR 42 262 0 304 169 72 12 chr11 47235080 47235163 -103548390 + MLT1J1 LTR MaLR 359 446 0 216 300 8 92 chr11 47235385 47235505 -103548048 - MIR3 SINE MIR -84 124 15 1761 155 47 14 chr11 47236094 47236391 -103547162 - AluJo SINE Alu -5 307 1 866 124 56 19 chr11 47236766 47236927 -103546626 + THE1C LTR MaLR 1 167 -208 217 354 24 0 chr11 47236927 47237009 -103546544 - MIR3 SINE MIR -42 166 83 552 174 0 0 chr11 47237055 47237176 -103546377 + (TCCA)n Simple_repeat Simple_repeat 1 121 0 427 315 144 23 chr11 47237817 47237900 -103545653 + L2 LINE L2 2972 3044 -269 2001 130 30 76 chr11 47237900 47238293 -103545260 + THE1C LTR MaLR 1 375 0 427 315 144 23 chr11 47238293 47238514 -103545039 + L2 LINE L2 3044 3313 0 351 279 165 14 chr11 47238743 47238897 -103544656 + MIR SINE MIR 13 176 -78 189 268 18 36 chr11 47238916 47238972 -103544581 - L2 LINE L2 -47 3225 3171 360 236 278 0 chr11 47238986 47239130 -103544423 + MIR SINE MIR 79 262 0 226 181 14 14 chr11 47239259 47239292 -103544261 + (TA)n Simple_repeat Simple_repeat 1 33 -39 2164 105 3 3 chr11 47239292 47239588 -103543965 + AluSq SINE Alu 1 296 -17 226 181 14 14 chr11 47239588 47239626 -103543927 + (TA)n Simple_repeat Simple_repeat 32 72 0 1805 211 23 41 chr11 47239647 47240134 -103543419 - L1ME2 LINE L1 -100 6064 5587 1493 262 70 19 chr11 47240134 47240459 -103543094 - L1MEc LINE L1 -3366 3278 2971 1824 130 48 7 chr11 47240459 47240752 -103542801 - AluSx SINE Alu -7 305 1 1493 262 70 19 chr11 47240752 47241325 -103542228 - L1MEc LINE L1 -3673 2971 2369 460 157 0 0 chr11 47241330 47241400 -103542153 + AluSq SINE Alu 129 198 -115 2319 234 33 6 chr11 47241500 47242131 -103541422 - L1MB7 LINE L1 -9 6175 5528 675 292 82 30 chr11 47242132 47242315 -103541238 - L1MEc LINE L1 -4535 2290 2118 1780 157 0 14 chr11 47242315 47242767 -103540786 - AluSx SINE Alu 0 448 1 675 292 82 30 chr11 47242767 47243045 -103540508 - L1MEc LINE L1 -4707 2118 1804 291 217 174 26 chr11 47243048 47243278 -103540275 - L1MEc LINE L1 -4990 1552 1289 319 347 84 48 chr11 47243291 47243542 -103540011 - L1MEc LINE L1 -5468 1357 1098 789 233 79 0 chr11 47243929 47244144 -103539409 - MIR SINE MIR -3 259 28 427 210 65 58 chr11 47244348 47244486 -103539067 + MER5A DNA MER1_type 51 189 0 294 335 13 20 chr11 47245934 47246086 -103537467 + MIR SINE MIR 61 211 -51 * 600 312 9 41 chr11 47246042 47246260 -103537293 - MIR SINE MIR -1 261 51 201 204 0 0 chr11 47246953 47246997 -103536556 - MER91 DNA MER1_type -143 47 4 2269 116 7 0 chr11 47247359 47247660 -103535893 + AluSx SINE Alu 1 303 -9 309 224 82 0 chr11 47247831 47247916 -103535637 + L2 LINE L2 3150 3241 -31 189 0 0 0 chr11 47248328 47248349 -103535204 + (A)n Simple_repeat Simple_repeat 1 21 0 191 216 0 0 chr11 47248522 47248559 -103534994 + MIR SINE MIR 118 154 -108 582 230 16 64 chr11 47248815 47249002 -103534551 - MIR3 SINE MIR -5 203 26 2310 86 0 0 chr11 47249002 47249306 -103534247 - AluSg SINE Alu 0 304 1 286 341 44 39 chr11 47249345 47249527 -103534026 - MIR SINE MIR 0 262 80 324 252 7 96 chr11 47250510 47250645 -103532908 + MER5A DNA MER1_type 44 166 -23 2410 102 0 9 chr11 47251389 47251704 -103531849 - AluSx SINE Alu 0 312 1 392 318 0 16 chr11 47251713 47251842 -103531711 - MIR3 SINE MIR -67 141 15 214 293 0 0 chr11 47251851 47251909 -103531644 + CT-rich Low_complexity Low_complexity 1 58 0 606 276 64 56 chr11 47253125 47253502 -103530051 - L2 LINE L2 -1 3312 2933 671 292 133 50 chr11 47253668 47254332 -103529221 + Charlie7 DNA MER1_type 5 723 -1889 604 213 132 23 chr11 47256241 47256415 -103527138 - MIR SINE MIR -1 261 69 300 210 0 0 chr11 47256418 47256480 -103527073 + MIR SINE MIR 195 256 -6 408 267 0 0 chr11 47256489 47256575 -103526978 + AluJ/FLAM SINE Alu 2 87 -225 1922 99 0 16 chr11 47256575 47256659 -103526894 + AluSx SINE Alu 52 136 -176 1908 123 0 86 chr11 47256659 47256983 -103526570 + AluSx SINE Alu 1 296 -16 1922 99 0 16 chr11 47256983 47257151 -103526402 + AluSx SINE Alu 136 300 -12 260 290 50 30 chr11 47257678 47257778 -103525775 - MIR SINE MIR -66 196 95 296 214 48 24 chr11 47257903 47257987 -103525566 - MIR SINE MIR -146 116 31 232 203 13 101 chr11 47258128 47258207 -103525346 + MIR SINE MIR 78 149 -59 220 348 43 9 chr11 47259267 47259382 -103524171 + MIR SINE MIR 126 244 -18 461 302 26 31 chr11 47260510 47260702 -103522851 - LTR16C LTR ERVL -2 489 299 481 232 16 29 chr11 47261046 47261236 -103522317 + MIR SINE MIR 14 248 -14 236 221 15 44 chr11 47261216 47261284 -103522269 - MIR SINE MIR -83 179 114 * 1102 148 0 6 chr11 47262541 47262703 -103520850 - AluSg/x SINE Alu -18 294 134 2394 94 3 0 chr11 47262703 47263010 -103520543 - AluSq SINE Alu -5 308 1 231 208 0 18 chr11 47263124 47263202 -103520351 + MIR SINE MIR 55 132 -76 296 352 43 37 chr11 47263483 47263617 -103519936 - MIR SINE MIR -25 237 100 2229 95 0 38 chr11 47263617 47263932 -103519621 + AluSg SINE Alu 2 304 -6 296 352 43 37 chr11 47263932 47263959 -103519594 - MIR SINE MIR -162 100 75 1086 227 34 4 chr11 47264027 47264265 -103519288 + MIR SINE MIR 2 246 -16 231 36 0 0 chr11 47264268 47264296 -103519257 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 491 246 45 8 chr11 47264309 47264443 -103519110 - MIR SINE MIR -77 185 47 183 283 0 0 chr11 47264834 47264880 -103518673 + MIR SINE MIR 74 119 -143 216 171 0 0 chr11 47265455 47265490 -103518063 + (CA)n Simple_repeat Simple_repeat 1 35 0 309 227 0 0 chr11 47266036 47266177 -103517376 + (TG)n Simple_repeat Simple_repeat 1 141 0 420 222 0 0 chr11 47266243 47266423 -103517130 + (TG)n Simple_repeat Simple_repeat 1 180 0 256 239 80 0 chr11 47266732 47266820 -103516733 + L2 LINE L2 3136 3230 -42 190 328 31 0 chr11 47267923 47267987 -103515566 - MIR SINE MIR -22 240 175 268 208 0 0 chr11 47268109 47268157 -103515396 - MIR SINE MIR -111 151 104 371 282 32 39 chr11 47268170 47268326 -103515227 - MIR SINE MIR -20 242 88 305 267 33 0 chr11 47268787 47268877 -103514676 - LTR16A1 LTR ERVL -16 441 349 1506 219 140 20 chr11 47269262 47269713 -103513840 - MLT1D LTR MaLR 0 505 1 745 206 187 23 chr11 47269750 47269964 -103513589 + LTR16A1 LTR ERVL 202 450 -7 503 236 8 24 chr11 47269984 47270111 -103513442 - MIR SINE MIR -62 146 22 306 226 113 9 chr11 47270542 47270657 -103512896 + LTR33 LTR ERVL 33 159 -362 462 238 111 23 chr11 47270681 47270760 -103512793 + LTR33 LTR ERVL 335 406 -115 1659 158 171 51 chr11 47270760 47270865 -103512688 + MLT1D LTR MaLR 1 92 -413 2327 96 0 16 chr11 47270865 47271179 -103512374 + AluSx SINE Alu 1 309 -3 1659 158 171 51 chr11 47271179 47271523 -103512030 + MLT1D LTR MaLR 92 504 -1 462 238 111 23 chr11 47271523 47271615 -103511938 + LTR33 LTR ERVL 406 521 0 346 236 158 16 chr11 47272017 47272144 -103511409 + MIR SINE MIR 118 262 0 480 226 111 107 chr11 47272177 47272300 -103511253 - L2 LINE L2 -46 3267 3146 1706 173 0 11 chr11 47272300 47272571 -103510982 - AluJb SINE Alu -44 268 1 480 226 111 107 chr11 47272571 47272690 -103510863 - L2 LINE L2 -167 3146 3024 1476 142 0 0 chr11 47273039 47273244 -103510309 - AluSx SINE Alu -107 205 1 260 79 0 0 chr11 47273273 47273311 -103510242 - MIR SINE MIR -122 140 103 215 261 0 0 chr11 47274310 47274356 -103509197 - L3 LINE CR1 -113 1464 1419 1427 108 9 0 chr11 47274528 47274750 -103508803 - L1MA4A LINE L1 -3 6300 6077 1132 234 13 82 chr11 47274838 47275218 -103508335 - MLT1A1 LTR MaLR -11 354 1 322 231 77 0 chr11 47275335 47275426 -103508127 - MER117 DNA MER1_type -96 101 4 262 279 221 22 chr11 47276289 47276425 -103507128 + L2 LINE L2 3110 3272 0 375 23 0 0 chr11 47276436 47276467 -103507086 + (GGGAA)n Simple_repeat Simple_repeat 1 75 0 375 23 0 0 chr11 47276467 47276511 -103507042 + (GGGAA)n Simple_repeat Simple_repeat 5 48 0 400 211 135 0 chr11 47276654 47276758 -103506795 + MIR SINE MIR 73 190 -72 271 322 26 13 chr11 47277740 47277892 -103505661 - L1MCc LINE L1 -6250 173 20 425 360 22 0 chr11 47278032 47278168 -103505385 - MIR SINE MIR -119 143 5 216 0 0 0 chr11 47278338 47278362 -103505191 + (CA)n Simple_repeat Simple_repeat 2 25 0 189 0 0 0 chr11 47278361 47278382 -103505171 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 599 251 48 29 chr11 47278874 47279081 -103504472 + MIR SINE MIR 52 262 0 448 294 26 13 chr11 47279164 47279317 -103504236 - MER5A DNA MER1_type -32 157 3 7374 27 7 0 chr11 47279618 47281292 -103502261 - L1PA4 LINE L1 -5 6150 4471 370 212 45 136 chr11 47281443 47281530 -103502023 + MER117 DNA MER1_type 10 71 -126 729 202 26 66 chr11 47281530 47281758 -103501795 + MER20 DNA MER1_type 1 219 0 370 212 45 136 chr11 47281758 47281868 -103501685 + MER117 DNA MER1_type 71 189 -8 365 143 14 0 chr11 47281918 47281988 -103501565 - MSTA LTR MaLR 0 426 356 976 62 0 0 chr11 47281988 47282116 -103501437 - L1PA8 LINE L1 -276 5896 5769 35867 89 12 9 chr11 47282131 47288258 -103495295 - L1PA6 LINE L1 -5 6149 11 740 32 0 0 chr11 47288271 47288365 -103495188 - L1P3 LINE L1 -400 5772 5679 2030 53 0 4 chr11 47288365 47288620 -103494933 + L1PA8 LINE L1 5909 6172 0 1113 180 133 1 chr11 47288620 47288908 -103494645 - MSTA LTR MaLR -63 369 18 271 119 0 0 chr11 47288908 47288950 -103494603 + MSTB LTR MaLR 24 65 -361 2355 261 92 63 chr11 47289715 47291048 -103492505 + HAL1 LINE L1 357 1728 -779 734 261 242 21 chr11 47291096 47291617 -103491936 + HAL1 LINE L1 1866 2501 -6 380 216 186 0 chr11 47291641 47291809 -103491744 + L1MD3 LINE L1 7693 7993 -2 192 236 28 56 chr11 47292457 47292529 -103491024 + MIR SINE MIR 74 143 -65 288 313 10 0 chr11 47292564 47292660 -103490893 - MIR SINE MIR -115 147 51 438 246 62 23 chr11 47292744 47292874 -103490679 - L2 LINE L2 -8 3305 3171 331 300 9 0 chr11 47293272 47293382 -103490171 + MIR3 SINE MIR 46 156 -52 206 323 182 0 chr11 47293445 47293544 -103490009 - L2 LINE L2 0 3313 3197 725 327 60 45 chr11 47293998 47294546 -103489007 + L2 LINE L2 2639 3268 -4 253 281 34 11 chr11 47294699 47294788 -103488765 + MIR SINE MIR 56 146 -62 712 263 138 43 chr11 47295223 47295550 -103488003 + MLT1G1 LTR MaLR 238 595 0 484 283 135 13 chr11 47295614 47295844 -103487709 + MIR SINE MIR 1 258 -4 701 329 53 20 chr11 47295848 47296298 -103487255 - L2 LINE L2 -11 3302 2838 691 255 66 19 chr11 47297701 47297960 -103485593 + L2 LINE L2 2818 3088 -225 578 232 42 24 chr11 47297987 47298155 -103485398 + MER5B DNA MER1_type 1 171 -7 628 250 34 34 chr11 47298227 47298403 -103485150 - MIR SINE MIR -79 183 8 300 210 274 8 chr11 47298420 47298544 -103485009 - MIR SINE MIR -75 187 31 1406 104 26 30 chr11 47298544 47298775 -103484778 + MER30 DNA MER1_type 1 230 0 500 158 12 0 chr11 47298779 47298861 -103484692 + MER30 DNA MER1_type 148 230 0 683 279 97 13 chr11 47299233 47299470 -103484083 - MIR SINE MIR -3 259 3 381 359 25 0 chr11 47300499 47300658 -103482895 + L2 LINE L2 2891 3053 -219 1032 154 0 36 chr11 47300769 47300964 -103482589 + MER5A DNA MER1_type 1 188 -1 357 282 160 21 chr11 47301138 47301326 -103482227 - MIR SINE MIR -28 234 21 490 231 137 34 chr11 47301398 47301632 -103481921 - HAL1 LINE L1 0 2507 2250 379 351 46 7 chr11 47301661 47301812 -103481741 + MER91B DNA MER1_type 33 189 -1 428 244 45 26 chr11 47301827 47301983 -103481570 - HAL1 LINE L1 -311 2196 2038 1342 285 44 37 chr11 47302186 47302642 -103480911 - MLT1J LTR MaLR -52 459 1 267 296 34 119 chr11 47302739 47303091 -103480462 + L2 LINE L2 2877 3198 -74 241 193 0 24 chr11 47303994 47304077 -103479476 + A-rich Low_complexity Low_complexity 4 84 0 819 277 139 36 chr11 47304156 47304247 -103479306 - MLT1J LTR MaLR -25 486 406 1433 182 73 53 chr11 47304247 47304605 -103478948 - MLT1A1 LTR MaLR 0 365 1 819 277 139 36 chr11 47304605 47304953 -103478600 - MLT1J LTR MaLR -105 406 2 715 239 78 53 chr11 47305472 47305715 -103477838 - MIR SINE MIR -12 250 2 284 331 160 11 chr11 47306741 47306922 -103476631 - MIR SINE MIR -5 257 50 1011 217 213 35 chr11 47307861 47308321 -103475232 + MLT1H LTR MaLR 1 542 -7 350 307 144 46 chr11 47309323 47309649 -103473904 + MLT1H1-int LTR MaLR 1013 1370 -1 424 282 81 52 chr11 47309694 47309983 -103473570 + MLT1H1 LTR MaLR 42 497 -118 560 221 111 35 chr11 47310044 47310216 -103473337 + MER5A DNA MER1_type 1 185 -4 278 252 131 0 chr11 47311403 47311510 -103472043 + MIR SINE MIR 86 206 -56 316 299 119 0 chr11 47311656 47311790 -103471763 - MIR SINE MIR -111 151 2 271 249 78 79 chr11 47312244 47312469 -103471084 - MIR SINE MIR -26 236 3 466 340 12 0 chr11 47313170 47313332 -103470221 - MER103 DNA DNA -1 165 2 1504 194 23 72 chr11 47313727 47314118 -103469435 + MLT1A2 LTR MaLR 1 372 -2 471 291 57 0 chr11 47314133 47314291 -103469262 + MIR SINE MIR 25 191 -71 916 290 125 9 chr11 47314737 47315367 -103468186 + L2 LINE L2 2460 3155 -158 887 262 0 5 chr11 47315385 47315587 -103467966 + MER3 DNA MER1_type 6 206 -3 371 248 47 31 chr11 47315603 47315682 -103467871 + L2 LINE L2 3181 3264 -49 2430 97 3 0 chr11 47315682 47315991 -103467562 - AluSx SINE Alu 0 312 3 371 248 47 31 chr11 47315991 47316040 -103467513 + L2 LINE L2 3264 3311 -2 207 247 44 39 chr11 47316053 47316141 -103467412 - MIR SINE MIR -64 144 72 295 273 113 33 chr11 47316748 47316898 -103466655 + MIR SINE MIR 100 261 -1 288 289 162 0 chr11 47316936 47317078 -103466475 - L2 LINE L2 -213 3059 2895 606 98 72 175 chr11 47317370 47317564 -103465989 + MER53 DNA DNA 1 174 -15 2376 95 3 0 chr11 47317739 47318034 -103465519 - AluSp SINE Alu -16 297 2 182 333 0 0 chr11 47318054 47318111 -103465442 + L2 LINE L2 2917 2973 -341 2457 87 7 0 chr11 47318122 47318431 -103465122 - AluY SINE Alu 0 311 1 223 305 24 0 chr11 47319114 47319196 -103464357 + L2 LINE L2 3189 3272 0 1101 303 120 34 chr11 47319968 47320502 -103463051 + MLT1K LTR MaLR 4 583 -5 247 325 155 10 chr11 47320816 47321016 -103462537 - MIR SINE MIR -32 230 2 434 288 53 1 chr11 47321091 47321214 -103462339 + MIR SINE MIR 18 153 -55 2120 153 11 0 chr11 47321214 47321592 -103461961 - L1MB3 LINE L1 -15 6168 5787 434 288 53 1 chr11 47321592 47321610 -103461943 + MIR SINE MIR 153 169 -39 361 172 91 0 chr11 47323797 47323896 -103459657 + MIR SINE MIR 30 137 -125 1205 264 185 50 chr11 47323897 47324796 -103458757 + L2 LINE L2 1529 2305 -1008 2257 75 0 14 chr11 47324796 47325077 -103458476 + AluSg SINE Alu 34 310 0 1205 264 185 50 chr11 47325077 47325682 -103457871 + L2 LINE L2 2305 3263 -50 232 263 111 20 chr11 47325842 47325941 -103457612 - MIR SINE MIR -106 156 49 1922 113 108 101 chr11 47325998 47326065 -103457488 - MSTA LTR MaLR 0 428 363 647 48 0 0 chr11 47326065 47326148 -103457405 + L1PA5 LINE L1 6063 6145 -9 1922 113 108 101 chr11 47326148 47326505 -103457048 - MSTA LTR MaLR -65 363 1 265 190 17 0 chr11 47326773 47326831 -103456722 - MIR SINE MIR -116 146 88 247 318 45 0 chr11 47327314 47327402 -103456151 + MIR SINE MIR 171 262 0 203 281 116 8 chr11 47327636 47327757 -103455796 - L2 LINE L2 -214 3058 2925 1061 171 22 45 chr11 47328037 47328259 -103455294 - MER20 DNA MER1_type -2 217 1 268 336 171 5 chr11 47329607 47330094 -103453459 - L2 LINE L2 -11 3302 2737 293 122 82 0 chr11 47330119 47330168 -103453385 + Alu SINE Alu 2 54 -249 2008 115 18 11 chr11 47330176 47330455 -103453098 + AluSx SINE Alu 26 306 -6 938 139 0 6 chr11 47330464 47330644 -103452909 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1099 212 13 39 chr11 47330824 47331055 -103452498 - MER82 DNA MER2_type -3 650 426 3618 123 81 8 chr11 47331063 47331327 -103452226 - Tigger3(Golem) DNA MER2_type 0 3029 2786 2304 100 10 0 chr11 47331327 47331636 -103451917 + AluSp SINE Alu 1 312 -1 3618 123 81 8 chr11 47331636 47332022 -103451531 - Tigger3(Golem) DNA MER2_type -243 2786 2331 1775 155 23 4 chr11 47332024 47332288 -103451265 + AluJb SINE Alu 1 269 -43 7765 133 27 12 chr11 47332288 47332892 -103450661 - Tigger3(Golem) DNA MER2_type -1746 1283 690 2455 82 10 0 chr11 47332892 47333197 -103450356 - AluSx SINE Alu -4 308 1 7765 133 27 12 chr11 47333197 47333856 -103449697 - Tigger3(Golem) DNA MER2_type -2339 690 1 2190 169 7 35 chr11 47333856 47334287 -103449266 - MER82 DNA MER2_type -234 419 1 295 304 65 11 chr11 47334287 47334379 -103449174 - L2 LINE L2 -779 2535 2439 278 173 19 0 chr11 47334401 47334453 -103449100 - Zaphod DNA AcHobo 0 4031 3979 * 680 325 72 57 chr11 47334420 47334838 -103448715 - MER115 DNA AcHobo -218 475 52 1290 164 74 7 chr11 47334838 47335137 -103448416 + MER33 DNA MER1_type 1 319 -5 480 177 14 5 chr11 47335435 47335533 -103448020 + MLT1H LTR MaLR 15 157 -392 1412 231 163 42 chr11 47335648 47336102 -103447451 + MLT1H LTR MaLR 41 549 0 1855 239 61 46 chr11 47336862 47337423 -103446130 - MLT1E LTR MaLR -7 586 18 239 263 0 0 chr11 47337735 47337792 -103445761 + MIR SINE MIR 189 245 -17 1478 155 175 7 chr11 47337902 47338199 -103445354 + MER47A DNA MER2_type 20 366 0 528 106 0 0 chr11 47338645 47338730 -103444823 + (TC)n Simple_repeat Simple_repeat 2 86 0 243 0 0 0 chr11 47338730 47338757 -103444796 + (CA)n Simple_repeat Simple_repeat 1 27 0 2307 123 0 0 chr11 47338799 47339107 -103444446 + AluSg SINE Alu 1 308 -2 297 356 92 6 chr11 47340157 47340331 -103443222 - MIR SINE MIR -6 256 68 209 286 0 0 chr11 47340372 47340421 -103443132 + MER91 DNA MER1_type 92 140 0 2132 102 39 0 chr11 47340592 47340877 -103442676 + AluSp SINE Alu 3 298 -15 183 323 16 0 chr11 47340971 47341033 -103442520 + MIR SINE MIR 150 212 -50 321 250 23 87 chr11 47341039 47341172 -103442381 - MIR SINE MIR -65 143 31 195 100 0 0 chr11 47341482 47341512 -103442041 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 718 246 235 6 chr11 47341520 47341986 -103441567 + L2 LINE L2 2741 3312 -1 794 281 16 24 chr11 47342038 47342287 -103441266 + MIR SINE MIR 2 248 -14 250 333 79 96 chr11 47342289 47342519 -103441034 - L2 LINE L2 -54 3218 2995 2005 153 0 0 chr11 47342519 47342876 -103440677 + AluSx SINE Alu 3 359 0 250 333 79 96 chr11 47342876 47343050 -103440503 - L2 LINE L2 -277 2995 2820 225 108 0 0 chr11 47343252 47343289 -103440264 + (GGGA)n Simple_repeat Simple_repeat 4 40 0 277 296 23 23 chr11 47343314 47343402 -103440151 + L2 LINE L2 2997 3084 -188 183 229 42 0 chr11 47343469 47343517 -103440036 - MIR SINE MIR -13 249 200 252 286 154 0 chr11 47343779 47343870 -103439683 - MIR SINE MIR -71 191 87 599 194 71 16 chr11 47344566 47344776 -103438777 - MIR SINE MIR -7 255 20 300 227 34 34 chr11 47347633 47347752 -103435801 + L1ME3A LINE L1 5975 6093 -77 734 284 67 34 chr11 47349119 47349358 -103434195 - MIR SINE MIR -11 251 5 296 242 38 106 chr11 47350099 47350231 -103433322 - MIR3 SINE MIR -71 137 15 225 212 30 15 chr11 47351918 47351984 -103431569 + (CA)n Simple_repeat Simple_repeat 2 68 0 460 215 87 0 chr11 47352088 47352237 -103431316 + L1M4 LINE L1 2849 3010 -3136 553 96 0 0 chr11 47352237 47352320 -103431233 + MLT1B LTR MaLR 306 388 -2 1751 143 19 88 chr11 47352325 47352527 -103431026 + L1MC3 LINE L1 6734 6894 -891 2323 99 7 16 chr11 47352527 47352830 -103430723 + AluSx SINE Alu 3 302 -10 1751 143 19 88 chr11 47352830 47353048 -103430505 + L1MC3 LINE L1 6894 7125 -660 1588 212 3 0 chr11 47353048 47353340 -103430213 + AluJo SINE Alu 1 293 -19 329 296 81 97 chr11 47353836 47354022 -103429531 - MER5A DNA MER1_type -5 184 2 2304 96 53 28 chr11 47354570 47354925 -103428628 - THE1B LTR MaLR 0 364 1 182 233 121 86 chr11 47354956 47355072 -103428481 + MIR3 SINE MIR 40 159 -49 25 0 0 0 chr11 47355207 47355232 -103428321 + AT_rich Low_complexity Low_complexity 1 25 0 692 241 52 11 chr11 47355242 47355416 -103428137 - MIR SINE MIR -68 194 14 305 282 48 10 chr11 47355710 47355813 -103427740 + L2 LINE L2 2877 2983 -289 598 335 102 50 chr11 47356802 47357202 -103426351 + L2 LINE L2 2851 3271 -1 939 118 0 0 chr11 47357314 47357467 -103426086 + (TCCA)n Simple_repeat Simple_repeat 4 156 0 225 332 93 18 chr11 47357965 47358191 -103425362 - L2 LINE L2 -221 3051 2809 237 254 164 9 chr11 47358235 47358345 -103425208 - L2 LINE L2 0 3272 3146 269 287 73 69 chr11 47358442 47358591 -103424962 + L2 LINE L2 2554 2701 -613 1953 129 13 16 chr11 47358591 47358894 -103424659 + AluJb SINE Alu 1 302 -10 269 287 73 69 chr11 47358894 47359047 -103424506 + L2 LINE L2 2701 2857 -457 21 0 0 0 chr11 47360036 47360057 -103423496 + AT_rich Low_complexity Low_complexity 1 21 0 2226 123 3 7 chr11 47360099 47360409 -103423144 - AluJb SINE Alu 0 312 4 573 259 20 0 chr11 47361204 47361351 -103422202 - MLT1K LTR MaLR -25 563 414 693 313 95 32 chr11 47361363 47361795 -103421758 - L2 LINE L2 -1241 2073 1615 242 227 227 11 chr11 47362030 47362118 -103421435 + MIR3 SINE MIR 74 180 -28 24695 28 4 1 chr11 47362603 47365813 -103417740 - L1P2 LINE L1 -649 5506 2286 1909 192 0 0 chr11 47366511 47366819 -103416734 - AluJb SINE Alu -4 308 1 249 311 56 36 chr11 47367067 47367263 -103416290 - MER90 LTR ERV1 -16 559 360 220 200 29 0 chr11 47367580 47367650 -103415903 + (CCA)n Simple_repeat Simple_repeat 3 74 0 442 306 101 0 chr11 47368045 47368223 -103415330 + MIR SINE MIR 62 255 -7 309 353 7 7 chr11 47368456 47368595 -103414958 + GA-rich Low_complexity Low_complexity 1 139 0 268 252 108 54 chr11 47369026 47369137 -103414416 - L2 LINE L2 -49 3223 3107 2266 104 3 20 chr11 47369179 47369478 -103414075 - AluSx SINE Alu -18 294 1 349 274 40 48 chr11 47369478 47369602 -103413951 - L2 LINE L2 -12 3301 3179 1617 164 17 125 chr11 47369693 47370101 -103413452 - MLT1A1 LTR MaLR 0 365 2 218 250 12 83 chr11 47370304 47370388 -103413165 - MIR3 SINE MIR -30 178 101 308 225 34 0 chr11 47370943 47371021 -103412532 + MIR SINE MIR 62 140 -68 369 301 109 75 chr11 47371458 47371897 -103411656 + L2 LINE L2 2818 3271 -1 276 137 0 0 chr11 47372447 47372498 -103411055 + (TC)n Simple_repeat Simple_repeat 2 52 0 17817 52 2 7 chr11 47372727 47375020 -103408533 - L1P LINE L1 -3864 2282 2 4900 246 62 27 chr11 47375052 47376887 -103406666 + L1M4 LINE L1 3352 5250 -896 4774 41 0 44 chr11 47377049 47377663 -103405890 + L1PA4 LINE L1 5569 6155 0 396 55 0 0 chr11 47377740 47377795 -103405758 + (TG)n Simple_repeat Simple_repeat 2 56 0 2209 267 118 31 chr11 47377801 47380098 -103403455 - L1MEc LINE L1 -2900 3315 857 2348 59 36 13 chr11 47380326 47380630 -103402923 - AluY SINE Alu 0 311 1 1445 245 45 34 chr11 47381066 47381536 -103402017 - L1M4 LINE L1 -1944 4202 3728 2559 174 33 39 chr11 47381541 47382177 -103401376 - L1MC3 LINE L1 -16 7769 7138 763 130 0 31 chr11 47382279 47382440 -103401113 + (GGAA)n Simple_repeat Simple_repeat 2 157 0 980 254 110 40 chr11 47382998 47383427 -103400126 + MLT1J LTR MaLR 1 459 -52 802 278 144 35 chr11 47383439 47383785 -103399768 + L2 LINE L2 2926 3309 -4 364 307 58 26 chr11 47383813 47384002 -103399551 - MIR SINE MIR -6 256 62 327 313 18 0 chr11 47384438 47384550 -103399003 + MIR SINE MIR 79 192 -70 485 224 112 0 chr11 47384727 47384843 -103398710 + MIR3 SINE MIR 64 192 -16 560 279 130 5 chr11 47384891 47385106 -103398447 - MIR SINE MIR -19 243 2 577 238 84 0 chr11 47385995 47386138 -103397415 - MIR SINE MIR -96 166 12 223 348 113 22 chr11 47386258 47386620 -103396933 - L2 LINE L2 -356 2958 2564 2146 132 10 3 chr11 47386675 47386978 -103396575 + AluSx SINE Alu 1 305 -7 1728 115 0 0 chr11 47387075 47387327 -103396226 - L1MA2 LINE L1 0 6304 6053 790 262 53 13 chr11 47388267 47388492 -103395061 - MIR SINE MIR -14 248 15 2229 120 7 3 chr11 47388781 47389089 -103394464 + AluSc SINE Alu 1 309 0 212 321 57 29 chr11 47390153 47390293 -103393260 - L2 LINE L2 -209 3063 2920 192 250 0 0 chr11 47390670 47390734 -103392819 + GA-rich Low_complexity Low_complexity 3 66 0 388 229 30 29 chr11 47390776 47390883 -103392670 + MIR SINE MIR 37 152 -62 386 239 169 0 chr11 47390893 47391035 -103392518 + L1ME3 LINE L1 5975 6140 -22 207 178 56 22 chr11 47391038 47391128 -103392425 + (TA)n Simple_repeat Simple_repeat 2 94 0 248 276 97 54 chr11 47391711 47391902 -103391651 + MIR SINE MIR 3 192 -62 286 110 21 7 chr11 47391933 47391992 -103391561 - MIR SINE MIR -35 173 112 1809 204 37 3 chr11 47392387 47392740 -103390813 - MLT1A1 LTR MaLR 0 365 1 239 211 336 0 chr11 47392786 47392890 -103390663 - MIR3 SINE MIR -26 182 44 1138 246 130 8 chr11 47393867 47394312 -103389241 - MLT1G3 LTR MaLR -6 524 60 248 230 95 0 chr11 47394686 47394760 -103388793 + MIR SINE MIR 76 156 -106 402 195 12 12 chr11 47395161 47395243 -103388310 + MIR SINE MIR 175 256 -6 1836 125 54 54 chr11 47395246 47395543 -103388010 - AluSg SINE Alu -13 297 1 754 332 39 8 chr11 47396919 47397274 -103386279 + L3 LINE CR1 1211 1576 -1 417 270 7 66 chr11 47398108 47398260 -103385293 + MER91B DNA MER1_type 20 162 -28 547 273 88 26 chr11 47398398 47398706 -103384847 - HAL1 LINE L1 -29 2478 2152 1319 318 82 13 chr11 47398717 47399312 -103384241 + ERVL LTR ERVL 4457 5092 -672 5896 150 20 15 chr11 47399367 47400201 -103383352 - L1PB2 LINE L1 -2 6149 5321 225 0 0 0 chr11 47400201 47400226 -103383327 + (TG)n Simple_repeat Simple_repeat 2 26 0 5896 150 20 15 chr11 47400226 47401203 -103382350 - L1PB2 LINE L1 -830 5321 4335 261 0 0 0 chr11 47401203 47401232 -103382321 + (TG)n Simple_repeat Simple_repeat 2 30 0 5896 150 20 15 chr11 47401232 47401509 -103382044 - L1PB2 LINE L1 -1816 4335 4061 1804 258 73 66 chr11 47401512 47402548 -103381005 + L1MEc LINE L1 872 1900 -4315 204 40 0 0 chr11 47402548 47402573 -103380980 + (TG)n Simple_repeat Simple_repeat 2 26 0 1804 258 73 66 chr11 47402573 47403054 -103380499 + L1MEc LINE L1 1900 2374 -3841 2307 125 6 0 chr11 47403054 47403365 -103380188 + AluSq SINE Alu 1 313 0 1804 258 73 66 chr11 47403365 47403691 -103379862 + L1MEc LINE L1 2374 2696 -3519 384 282 45 57 chr11 47403976 47404221 -103379332 + HAL1 LINE L1 154 395 -2112 2132 85 0 72 chr11 47404361 47404692 -103378861 + AluSx SINE Alu 1 309 0 2060 92 15 0 chr11 47404697 47404959 -103378594 + AluSx SINE Alu 45 310 -2 1729 166 37 17 chr11 47404970 47405265 -103378288 + AluJo SINE Alu 1 301 -11 285 98 0 0 chr11 47405422 47405463 -103378090 + (CA)n Simple_repeat Simple_repeat 1 41 0 469 255 144 16 chr11 47405535 47405778 -103377775 + HAL1 LINE L1 744 1017 -1490 1761 193 3 7 chr11 47405786 47406082 -103377471 + AluJb SINE Alu 1 295 -17 365 387 82 7 chr11 47406101 47406380 -103377173 + L1ME LINE L1 4867 5166 -980 443 294 57 81 chr11 47406449 47406796 -103376757 + L1ME LINE L1 5258 5591 -530 2407 91 0 0 chr11 47406796 47407094 -103376459 + AluSg SINE Alu 9 306 -4 443 294 57 81 chr11 47407094 47407252 -103376301 + L1ME LINE L1 5591 5751 -370 381 248 22 58 chr11 47407775 47407912 -103375641 - MIR SINE MIR -61 147 16 402 292 45 7 chr11 47408043 47408197 -103375356 - L3 LINE CR1 -107 1470 1311 225 146 21 21 chr11 47408699 47408747 -103374806 - LTR67 LTR ERVL -6 551 504 741 230 24 6 chr11 47408747 47408912 -103374641 + MLT1F LTR MaLR 3 170 -372 497 165 11 11 chr11 47408911 47409002 -103374551 + MLT1F1 LTR MaLR 471 561 -6 * 945 279 60 82 chr11 47408988 47409526 -103374027 - LTR67 LTR ERVL -26 531 6 481 294 85 18 chr11 47409611 47410026 -103373527 + L2 LINE L2 2666 3104 -209 479 249 44 25 chr11 47411105 47411320 -103372233 + MIR SINE MIR 8 231 -31 195 331 158 0 chr11 47411688 47411821 -103371732 - MIR3 SINE MIR -40 168 15 415 293 66 28 chr11 47412593 47412805 -103370748 - MIR SINE MIR -14 248 29 185 191 0 24 chr11 47413412 47413454 -103370099 - MIR SINE MIR -118 144 104 270 222 41 29 chr11 47414195 47414366 -103369187 + (CCG)n Simple_repeat Simple_repeat 3 175 0 327 182 50 25 chr11 47414445 47414566 -103368987 + G-rich Low_complexity Low_complexity 6 129 0 22 35 0 0 chr11 47414608 47414637 -103368916 + GC_rich Low_complexity Low_complexity 1 29 0 276 344 83 42 chr11 47415731 47415923 -103367630 + MIR SINE MIR 53 252 -10 827 292 136 22 chr11 47416343 47416894 -103366659 + L2 LINE L2 2278 2891 -423 908 275 61 25 chr11 47416991 47417384 -103366169 + MLT1I LTR MaLR 3 409 0 191 329 13 13 chr11 47417464 47417540 -103366013 + L2 LINE L2 2681 2756 -558 435 320 149 5 chr11 47418305 47418499 -103365054 - MIR SINE MIR -1 261 40 555 330 117 22 chr11 47419010 47419419 -103364134 - L2 LINE L2 -1 3271 2824 682 246 95 60 chr11 47419450 47419566 -103363987 + L2 LINE L2 2931 3041 -272 1975 142 7 4 chr11 47419566 47419867 -103363686 - AluSx SINE Alu 0 302 1 682 246 95 60 chr11 47419867 47420119 -103363434 + L2 LINE L2 3041 3313 0 599 286 116 0 chr11 47420117 47420316 -103363237 - MIR SINE MIR -13 249 28 * 246 260 167 40 chr11 47420404 47420554 -103362999 - L2 LINE L2 -556 2758 2590 235 339 24 16 chr11 47420820 47420947 -103362606 + MIR SINE MIR 47 174 -88 189 214 114 43 chr11 47421178 47421248 -103362305 + MIR SINE MIR 94 168 -94 314 245 71 10 chr11 47421353 47421451 -103362102 - MIR SINE MIR -81 181 78 2006 154 0 3 chr11 47421573 47421878 -103361675 + AluJo SINE Alu 1 304 -8 388 266 39 23 chr11 47422255 47422383 -103361170 - MIR SINE MIR -98 164 35 657 260 29 6 chr11 47423401 47423574 -103359979 - MIR SINE MIR -72 190 14 288 257 39 34 chr11 47423970 47424184 -103359369 + MER5C DNA MER1_type 17 323 -1 440 274 80 43 chr11 47424240 47424661 -103358892 - L2 LINE L2 -188 3084 2640 1682 133 14 89 chr11 47424671 47425031 -103358522 - MER1B DNA MER1_type 0 337 5 295 268 77 10 chr11 47426944 47427087 -103356466 - MIR SINE MIR -63 145 35 260 242 0 0 chr11 47427713 47427775 -103355778 - L3 LINE CR1 -114 1463 1402 260 267 0 0 chr11 47428027 47428102 -103355451 - L1MC4a LINE L1 -1882 5926 5852 276 352 69 0 chr11 47428291 47428436 -103355117 - L3 LINE CR1 -210 1367 1213 795 268 22 18 chr11 47428511 47428735 -103354818 + MIR SINE MIR 28 252 -10 436 304 8 0 chr11 47429357 47429482 -103354071 - MIR SINE MIR -64 144 19 187 276 138 57 chr11 47429820 47429943 -103353610 - MIR SINE MIR -98 164 32 551 224 233 19 chr11 47430050 47430260 -103353293 - MIR SINE MIR -3 259 5 297 200 36 0 chr11 47430311 47430366 -103353187 + L2 LINE L2 3214 3270 -2 384 334 3 0 chr11 47431101 47431237 -103352316 + MIR3 SINE MIR 23 163 -45 390 279 100 31 chr11 47431481 47431662 -103351891 + MIR SINE MIR 17 205 -54 385 229 57 9 chr11 47432340 47432445 -103351108 - MIR3 SINE MIR -11 197 88 510 232 62 56 chr11 47432502 47432683 -103350870 - MIR SINE MIR -81 181 3 319 182 30 0 chr11 47432813 47432879 -103350674 - L2 LINE L2 -1 3312 3245 613 275 81 40 chr11 47433003 47433250 -103350303 - MER102b DNA MER1_type -4 337 81 267 224 39 0 chr11 47433476 47433553 -103350000 + MIR SINE MIR 80 146 -62 800 264 75 68 chr11 47433564 47434003 -103349550 - MLT1K LTR MaLR -9 579 138 299 229 121 0 chr11 47434079 47434162 -103349391 + L2 LINE L2 3149 3241 -31 363 267 52 30 chr11 47434548 47434683 -103348870 + MIR SINE MIR 117 254 -8 200 194 0 0 chr11 47434789 47434825 -103348728 + (CA)n Simple_repeat Simple_repeat 2 37 0 409 262 113 80 chr11 47434888 47435250 -103348303 - LTR40c LTR ERVL -87 378 5 302 0 26 0 chr11 47435256 47435294 -103348259 + (CA)n Simple_repeat Simple_repeat 1 39 0 220 159 114 0 chr11 47435323 47435367 -103348186 + L3 LINE CR1 1414 1462 -115 200 303 26 26 chr11 47435449 47435525 -103348028 + MER5A DNA MER1_type 83 158 -31 * 354 243 10 29 chr11 47435462 47435565 -103347988 - MER5A DNA MER1_type -85 104 4 185 200 100 50 chr11 47435565 47435608 -103347945 + L3b LINE CR1 1527 1572 -11 207 268 106 0 chr11 47435981 47436104 -103347449 + MIR3 SINE MIR 50 185 -23 * 252 212 85 101 chr11 47436102 47436222 -103347331 + MIR SINE MIR 44 162 -46 358 100 0 0 chr11 47436668 47436728 -103346825 - L1MC5 LINE L1 -66 7895 7836 884 263 70 8 chr11 47436937 47437045 -103346508 - MIR SINE MIR -4 258 158 979 39 78 0 chr11 47437045 47437174 -103346379 + MER85 DNA T2_type 1 139 0 884 263 70 8 chr11 47437174 47437308 -103346245 - MIR SINE MIR -104 158 1 1022 281 120 19 chr11 47437365 47437555 -103345998 - L2 LINE L2 -4 3309 3140 2266 120 0 0 chr11 47437555 47437855 -103345698 + AluSx SINE Alu 1 300 -12 1022 281 120 19 chr11 47437855 47438359 -103345194 - L2 LINE L2 -173 3140 2560 488 259 133 73 chr11 47438380 47438570 -103344983 - L1MC/D LINE L1 -1988 5820 5606 2196 126 0 0 chr11 47438570 47438896 -103344657 - AluSx SINE Alu 0 312 1 488 259 133 73 chr11 47438896 47438991 -103344562 - L1MC/D LINE L1 -2202 5606 5518 270 324 93 14 chr11 47439189 47439328 -103344225 - MLT1L LTR MaLR 0 615 466 189 0 0 0 chr11 47439403 47439424 -103344129 + (CAATT)n Simple_repeat Simple_repeat 1 21 0 1348 283 89 45 chr11 47439426 47440075 -103343478 - MER21B LTR ERV1 -166 697 20 1411 155 25 2 chr11 47440075 47440357 -103343196 - MER2 DNA MER2_type 0 345 9 237 356 10 0 chr11 47440598 47440699 -103342854 - MLT1L LTR MaLR -415 200 99 2501 79 0 0 chr11 47440836 47441139 -103342414 + AluSq SINE Alu 1 303 -10 1039 224 73 48 chr11 47441387 47441745 -103341808 - L1ME3A LINE L1 -10 6160 5794 225 255 0 0 chr11 47442047 47442098 -103341455 - L2 LINE L2 0 3313 3263 2583 236 40 52 chr11 47442478 47443493 -103340060 - L1MC1 LINE L1 -12 6321 5319 1951 125 28 10 chr11 47443597 47443886 -103339667 + AluSx SINE Alu 1 294 -18 22 56 0 0 chr11 47443922 47443958 -103339595 + AT_rich Low_complexity Low_complexity 1 36 0 344 280 25 8 chr11 47443994 47444112 -103339441 - MIR SINE MIR -86 176 57 286 342 53 9 chr11 47444362 47444476 -103339077 - MIR SINE MIR -60 148 30 274 366 0 16 chr11 47445589 47445712 -103337841 + CT-rich Low_complexity Low_complexity 2 122 0 262 250 14 14 chr11 47445780 47445852 -103337701 - MIR SINE MIR -108 154 83 475 257 191 0 chr11 47446190 47446326 -103337227 - MER96 DNA MER1_type? -13 162 1 332 256 111 0 chr11 47446326 47446416 -103337137 - L2 LINE L2 -39 3233 3134 298 208 14 14 chr11 47446875 47446947 -103336606 - MIR SINE MIR -96 166 95 1155 229 96 10 chr11 47446947 47447261 -103336292 - MLT1A2 LTR MaLR 0 374 34 229 215 139 25 chr11 47447280 47447359 -103336194 - MIR SINE MIR -162 100 13 190 229 0 21 chr11 47447637 47447685 -103335868 + MIR SINE MIR 82 128 -80 22 70 0 0 chr11 47448020 47448063 -103335490 + GC_rich Low_complexity Low_complexity 1 43 0 188 86 29 0 chr11 47448181 47448216 -103335337 + (CCGGG)n Simple_repeat Simple_repeat 5 40 0 25 0 0 0 chr11 47448251 47448276 -103335277 + GC_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr11 47448295 47448332 -103335221 + GC_rich Low_complexity Low_complexity 1 37 0 205 200 18 18 chr11 47450009 47450064 -103333489 - MIR SINE MIR -107 155 101 390 282 0 24 chr11 47451007 47451131 -103332422 - L2 LINE L2 -40 3273 3153 1407 310 90 31 chr11 47451309 47452662 -103330891 - L2 LINE L2 -2 3311 1877 796 194 11 63 chr11 47452670 47452861 -103330692 + MER20 DNA MER1_type 1 181 -38 2141 181 81 33 chr11 47453227 47453709 -103329844 + MLT1D LTR MaLR 1 505 0 249 336 88 0 chr11 47454085 47454210 -103329343 - L2 LINE L2 -1411 1903 1768 187 342 88 9 chr11 47454213 47454327 -103329226 - MIR SINE MIR -17 245 123 393 22 0 0 chr11 47455294 47455340 -103328213 + (TG)n Simple_repeat Simple_repeat 2 47 0 929 267 17 4 chr11 47455689 47455935 -103327618 - MIR SINE MIR -10 252 3 2300 89 4 0 chr11 47456388 47456697 -103326856 - AluSp SINE Alu 0 310 1 1590 201 79 61 chr11 47457477 47457617 -103325936 - L1MC4 LINE L1 0 8042 7906 189 107 0 0 chr11 47457617 47457645 -103325908 + (CA)n Simple_repeat Simple_repeat 2 29 0 2162 137 0 3 chr11 47457645 47457944 -103325609 - AluSx SINE Alu -14 298 1 1590 201 79 61 chr11 47457944 47458063 -103325490 - L1MC4 LINE L1 -136 7906 7791 1154 221 20 49 chr11 47458063 47458411 -103325142 - MER58B DNA MER1_type -3 338 1 1590 201 79 61 chr11 47458411 47459294 -103324259 - L1MC4 LINE L1 -251 7791 6727 299 25 25 0 chr11 47459304 47459344 -103324209 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1535 83 0 5 chr11 47459344 47459562 -103323991 - L1PA8 LINE L1 -16 6156 5940 863 201 13 0 chr11 47460565 47460747 -103322806 - AluJo SINE Alu 0 310 127 287 250 10 87 chr11 47460863 47460918 -103322635 - MLT1H LTR MaLR 0 549 504 1455 186 100 3 chr11 47460918 47461229 -103322324 - MER58B DNA MER1_type 0 341 1 287 250 10 87 chr11 47461229 47461277 -103322276 - MLT1H LTR MaLR -45 504 454 186 189 0 0 chr11 47461982 47462019 -103321534 + (TAA)n Simple_repeat Simple_repeat 2 38 0 365 307 30 13 chr11 47462034 47462080 -103321473 - MIR SINE MIR -62 146 102 2911 10 0 0 chr11 47462080 47462389 -103321164 - AluYa5 SINE Alu -2 309 1 365 307 30 13 chr11 47462389 47462498 -103321055 - MIR SINE MIR -106 102 43 3011 163 76 65 chr11 47462686 47463053 -103320500 - L1MB8 LINE L1 0 6178 5816 1981 156 6 13 chr11 47463053 47463367 -103320186 - AluSx SINE Alu 0 312 1 3011 163 76 65 chr11 47463367 47463753 -103319800 - L1MB8 LINE L1 -362 5816 5417 201 339 0 0 chr11 47463789 47463854 -103319699 + MER91B DNA MER1_type 2 66 -124 418 302 17 41 chr11 47464316 47464488 -103319065 + MIR SINE MIR 47 214 -48 2632 167 20 4 chr11 47464661 47465169 -103318384 + L1MA10 LINE L1 5815 6330 -4 2689 50 0 0 chr11 47465184 47465525 -103318028 + L1PA5 LINE L1 5814 6154 0 445 273 190 28 chr11 47466326 47466542 -103317011 + MIR SINE MIR 10 260 -2 512 368 123 0 chr11 47466682 47466992 -103316561 - L3 LINE CR1 -23 1554 1207 314 310 58 71 chr11 47467314 47467624 -103315929 + L2 LINE L2 2967 3272 0 397 314 64 0 chr11 47467920 47468076 -103315477 - MIR SINE MIR -74 188 23 222 37 0 0 chr11 47468478 47468505 -103315048 + (ATGGTG)n Simple_repeat Simple_repeat 6 32 0 1859 170 16 19 chr11 47468512 47468877 -103314676 + MER63 DNA MER1_type 696 1059 -1 306 132 0 0 chr11 47468921 47468974 -103314579 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 1880 146 0 57 chr11 47468974 47469177 -103314376 - AluJo SINE Alu -1 311 131 2310 84 3 20 chr11 47469177 47469475 -103314078 + AluY SINE Alu 1 293 -18 1880 146 0 57 chr11 47469475 47469586 -103313967 - AluJo SINE Alu -181 131 15 356 305 47 95 chr11 47469650 47469988 -103313565 - L2 LINE L2 0 3313 2992 239 288 85 28 chr11 47470419 47470596 -103312957 - L2 LINE L2 -457 2857 2671 579 178 12 137 chr11 47470861 47471102 -103312451 + L1MEd LINE L1 895 1105 -5014 1422 77 0 0 chr11 47471115 47471285 -103312268 - AluY SINE Alu -15 296 127 462 331 75 28 chr11 47471299 47471686 -103311867 + HAL1 LINE L1 1230 1634 -873 231 174 65 0 chr11 47471703 47471749 -103311804 - L2 LINE L2 -1178 2136 2088 416 192 61 10 chr11 47474165 47474264 -103309289 - MER5B DNA MER1_type -74 104 1 264 286 101 25 chr11 47474274 47474393 -103309160 - MIR SINE MIR -115 147 20 786 193 135 16 chr11 47474888 47475080 -103308473 + MER20 DNA MER1_type 3 217 -2 193 333 17 58 chr11 47475081 47475201 -103308352 - MIR SINE MIR -72 190 76 277 337 80 22 chr11 47475976 47476164 -103307389 - MIR SINE MIR -46 216 20 22 35 0 0 chr11 47476643 47476672 -103306881 + GC_rich Low_complexity Low_complexity 1 29 0 247 289 19 10 chr11 47476851 47476955 -103306598 + CT-rich Low_complexity Low_complexity 4 108 0 366 252 48 0 chr11 47476956 47477059 -103306494 - L2 LINE L2 -3 3269 3162 696 182 149 0 chr11 47477156 47477304 -103306249 + MER45A DNA AcHobo 1 170 -8 262 259 69 0 chr11 47477446 47477577 -103305976 - L2 LINE L2 -338 2975 2836 330 288 159 31 chr11 47478175 47478338 -103305215 - MIR3 SINE MIR -3 205 22 527 110 0 0 chr11 47479187 47479269 -103304284 - L1PB1 LINE L1 -124 6027 5946 724 122 0 0 chr11 47479273 47479388 -103304165 + L1PB1 LINE L1 6034 6148 -3 186 244 0 0 chr11 47481271 47481316 -103302237 - MIR SINE MIR -116 92 48 490 300 164 6 chr11 47485349 47485709 -103297844 - L1ME4a LINE L1 -19 6102 5686 309 252 162 15 chr11 47485735 47485967 -103297586 - L1ME4a LINE L1 -519 5602 5337 446 200 22 0 chr11 47486365 47486455 -103297098 + MIR SINE MIR 50 141 -121 354 341 84 11 chr11 47487941 47488120 -103295433 - MIR SINE MIR -64 198 7 299 160 0 0 chr11 47488834 47488884 -103294669 + L2 LINE L2 3263 3312 -1 1837 158 45 0 chr11 47490525 47490816 -103292737 + AluJb SINE Alu 1 304 -8 271 18 89 0 chr11 47495716 47495772 -103287781 + (TA)n Simple_repeat Simple_repeat 2 62 0 468 48 0 0 chr11 47496946 47497009 -103286544 + (CA)n Simple_repeat Simple_repeat 2 64 0 42 20 0 0 chr11 47497601 47497650 -103285903 + AT_rich Low_complexity Low_complexity 1 49 0 520 265 136 20 chr11 47503734 47504087 -103279466 + L2 LINE L2 2686 3068 -245 324 0 0 0 chr11 47504101 47504137 -103279416 + (TG)n Simple_repeat Simple_repeat 1 36 0 342 91 0 0 chr11 47504137 47504192 -103279361 + (GA)n Simple_repeat Simple_repeat 2 56 0 236 315 9 46 chr11 47504705 47504813 -103278740 + MIR SINE MIR 21 124 -138 1870 166 3 13 chr11 47505984 47506285 -103277268 + AluJb SINE Alu 1 298 -14 233 167 0 0 chr11 47506302 47506338 -103277215 - MIR3 SINE MIR -3 205 170 388 174 43 0 chr11 47506358 47506427 -103277126 - MIR3 SINE MIR -3 205 134 473 281 69 42 chr11 47507242 47507530 -103276023 + L1ME3A LINE L1 5600 5895 -275 222 219 86 76 chr11 47508756 47508861 -103274692 - L2 LINE L2 0 3313 3208 274 286 88 71 chr11 47509286 47509468 -103274085 + L3 LINE CR1 1130 1314 -263 2344 93 0 3 chr11 47509780 47510081 -103273472 + AluSq SINE Alu 1 300 -13 25 51 0 0 chr11 47510762 47510801 -103272752 + AT_rich Low_complexity Low_complexity 1 39 0 186 258 32 65 chr11 47510869 47510931 -103272622 + L3 LINE CR1 1451 1510 -67 248 308 171 0 chr11 47510956 47511073 -103272480 + MER5A DNA MER1_type 53 189 0 482 212 177 0 chr11 47512179 47512292 -103271261 - L2 LINE L2 0 3313 3181 340 330 142 0 chr11 47515209 47515385 -103268168 - L2 LINE L2 0 3313 3113 536 277 15 8 chr11 47515486 47515616 -103267937 + MIR SINE MIR 2 132 -130 250 255 245 0 chr11 47515749 47515851 -103267702 + L2 LINE L2 3178 3304 -9 358 335 23 28 chr11 47515867 47516043 -103267510 - MIR SINE MIR -72 190 16 356 243 136 0 chr11 47516078 47516181 -103267372 - MIR SINE MIR -55 153 37 7044 56 6 1 chr11 47516506 47517398 -103266155 + L1PA6 LINE L1 5254 6149 -5 420 260 32 24 chr11 47517784 47517907 -103265646 + L2 LINE L2 3190 3313 0 496 311 91 5 chr11 47518382 47518591 -103264962 + MIR SINE MIR 23 249 -13 2495 82 0 3 chr11 47518600 47518906 -103264647 + AluSc SINE Alu 1 305 -4 409 296 38 15 chr11 47520798 47520930 -103262623 + MIR3 SINE MIR 9 143 -65 865 282 58 23 chr11 47521244 47521591 -103261962 + MLT1J2 LTR MaLR 1 359 -91 1811 177 0 3 chr11 47522331 47522619 -103260934 + AluJb SINE Alu 5 291 -21 576 345 47 4 chr11 47522651 47522886 -103260667 - MIR SINE MIR -3 259 15 273 270 14 0 chr11 47523673 47523747 -103259806 + CT-rich Low_complexity Low_complexity 1 75 0 344 274 166 38 chr11 47523755 47524218 -103259335 + L2 LINE L2 2732 3241 -72 200 344 16 0 chr11 47524430 47524491 -103259062 + L2 LINE L2 3239 3300 -13 457 356 47 7 chr11 47524495 47524644 -103258909 + MER91A DNA MER1_type 2 156 -40 281 231 90 0 chr11 47525379 47525457 -103258096 - MIR SINE MIR -79 183 99 350 233 35 0 chr11 47525840 47525926 -103257627 + MIR SINE MIR 32 120 -88 271 250 163 25 chr11 47526409 47526489 -103257064 - MIR SINE MIR -104 158 68 751 223 16 27 chr11 47527351 47527539 -103256014 + MLT1L LTR MaLR 430 615 0 4910 147 12 20 chr11 47528504 47528823 -103254730 + L1MB3 LINE L1 5285 5605 -578 2229 88 3 24 chr11 47528823 47529120 -103254433 + AluY SINE Alu 21 311 0 2158 131 3 3 chr11 47529127 47529433 -103254120 + AluSx SINE Alu 1 306 -6 4910 147 12 20 chr11 47529433 47529938 -103253615 + L1MB3 LINE L1 5611 6118 -65 1764 173 4 0 chr11 47529938 47530216 -103253337 + AluJb SINE Alu 1 279 -33 414 0 0 0 chr11 47530216 47530262 -103253291 + (CA)n Simple_repeat Simple_repeat 1 46 0 4910 147 12 20 chr11 47530262 47530333 -103253220 + L1MB3 LINE L1 6116 6183 0 470 278 26 0 chr11 47530663 47530778 -103252775 - L2 LINE L2 -1 3312 3195 1008 254 16 16 chr11 47531225 47531477 -103252076 + MIR SINE MIR 3 254 -8 1461 237 92 17 chr11 47531711 47532239 -103251314 + MLT1F1 LTR MaLR 3 567 0 1754 236 34 12 chr11 47532258 47532757 -103250796 + L1ME2 LINE L1 5412 5921 -243 545 146 6 140 chr11 47532765 47532929 -103250624 + MER20 DNA MER1_type 4 145 -74 1346 241 24 3 chr11 47532943 47533275 -103250278 - MLT1A1 LTR MaLR -8 357 19 376 117 17 0 chr11 47533289 47533349 -103250204 + MER20 DNA MER1_type 159 219 0 704 201 201 0 chr11 47533349 47533553 -103250000 + L1ME2 LINE L1 5919 6163 -1 366 23 0 0 chr11 47533995 47534038 -103249515 + (CA)n Simple_repeat Simple_repeat 2 44 0 248 149 21 0 chr11 47534405 47534452 -103249101 - MLT1J2 LTR MaLR -36 414 367 589 250 85 27 chr11 47534514 47534738 -103248815 - MIR SINE MIR -24 238 2 313 308 77 0 chr11 47534903 47535007 -103248546 - MER5A DNA MER1_type -6 183 72 200 262 16 16 chr11 47535740 47535801 -103247752 - L2 LINE L2 -77 3236 3176 731 286 83 0 chr11 47535971 47536188 -103247365 - MIR SINE MIR 0 262 28 356 54 0 18 chr11 47536816 47536872 -103246681 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 530 282 56 0 chr11 47537129 47537271 -103246282 - MIR SINE MIR -112 150 1 498 298 42 12 chr11 47538588 47538756 -103244797 - MER117 DNA MER1_type -24 173 1 257 322 129 34 chr11 47538866 47539178 -103244375 - L2 LINE L2 -219 3053 2702 3629 73 2 2 chr11 47539386 47539876 -103243677 + L1PA7 LINE L1 5677 6166 0 968 254 76 6 chr11 47540546 47540888 -103242665 - LTR33 LTR ERVL -2 519 154 535 305 12 0 chr11 47541084 47541248 -103242305 + L2 LINE L2 3146 3311 -2 231 354 132 14 chr11 47541491 47541635 -103241918 - MIR3 SINE MIR -36 172 12 4031 62 18 0 chr11 47543587 47544089 -103239464 + L1PA7 LINE L1 5639 6149 -5 3775 159 52 29 chr11 47544174 47544904 -103238649 + L1MB5 LINE L1 5428 6174 0 514 298 30 125 chr11 47545015 47545527 -103238026 + L2 LINE L2 2791 3252 -20 724 246 81 65 chr11 47546631 47546807 -103236746 + MIR SINE MIR 8 191 -71 1784 157 7 24 chr11 47546807 47547100 -103236453 + AluJo SINE Alu 1 288 -24 724 246 81 65 chr11 47547100 47547171 -103236382 + MIR SINE MIR 191 259 -3 192 202 312 18 chr11 47547520 47547629 -103235924 + L2 LINE L2 3168 3308 -5 830 262 100 4 chr11 47548006 47548277 -103235276 - L1ME3A LINE L1 -11 6159 5863 2282 112 0 3 chr11 47548432 47548726 -103234827 + AluSx SINE Alu 13 305 -7 2082 137 3 7 chr11 47548891 47549190 -103234363 + AluSx SINE Alu 1 298 -14 1344 208 96 3 chr11 47549930 47550331 -103233222 - Charlie4a DNA MER1_type -52 456 18 1740 190 3 3 chr11 47550378 47550668 -103232885 + AluJb SINE Alu 7 296 -16 257 254 30 0 chr11 47551320 47551387 -103232166 - L2 LINE L2 -1 3312 3244 564 298 79 14 chr11 47551742 47551957 -103231596 + MIR SINE MIR 13 241 -21 218 224 24 106 chr11 47551992 47552077 -103231476 - L2 LINE L2 -557 2757 2680 233 139 0 0 chr11 47552093 47552129 -103231424 - L3 LINE CR1 -19 1558 1523 234 276 55 41 chr11 47553963 47554108 -103229445 - MIR3 SINE MIR -25 183 37 186 269 58 0 chr11 47554703 47554755 -103228798 - L2 LINE L2 -5 3267 3213 248 219 62 62 chr11 47554774 47554870 -103228683 + L2 LINE L2 2181 2276 -1038 476 263 78 71 chr11 47554908 47555317 -103228236 - MLT1G1 LTR MaLR -2 593 173 191 328 126 34 chr11 47555332 47555570 -103227983 + L2 LINE L2 2655 2914 -400 251 171 0 0 chr11 47555722 47555763 -103227790 - L2 LINE L2 -9 3304 3264 198 244 0 0 chr11 47556189 47556230 -103227323 - MIR SINE MIR -120 88 48 324 321 76 0 chr11 47556794 47556925 -103226628 - MIR3 SINE MIR -8 200 60 657 237 167 44 chr11 47556928 47557270 -103226283 - MLT1J2 LTR MaLR 0 450 67 640 313 71 60 chr11 47557350 47557702 -103225851 - L2 LINE L2 0 3272 2917 384 219 52 10 chr11 47557733 47557829 -103225724 + MER63 DNA MER1_type 26 751 -85 279 222 16 0 chr11 47557829 47557892 -103225661 + MER63 DNA MER1_type 997 1060 -1 354 249 17 98 chr11 47557956 47558026 -103225527 - L2 LINE L2 -557 2757 2683 880 174 0 0 chr11 47558026 47558158 -103225395 + FLAM_C SINE Alu 1 132 -1 354 249 17 98 chr11 47558158 47558260 -103225293 - L2 LINE L2 -631 2683 2599 218 200 0 0 chr11 47558339 47558384 -103225169 + MIR SINE MIR 93 137 -71 390 284 28 51 chr11 47559214 47559390 -103224163 + MIR SINE MIR 13 184 -78 1398 244 144 17 chr11 47559634 47560098 -103223455 + MLT1H LTR MaLR 2 524 -25 310 197 111 43 chr11 47560113 47560230 -103223323 + MIR SINE MIR 138 262 0 260 343 0 0 chr11 47560853 47560923 -103222630 - MIR SINE MIR -8 254 185 451 275 50 0 chr11 47561024 47561184 -103222369 - L1ME3A LINE L1 0 6170 6003 2346 99 6 13 chr11 47561356 47561669 -103221884 - AluSq SINE Alu 0 313 3 537 263 30 96 chr11 47561684 47561985 -103221568 + L2 LINE L2 3028 3308 -5 946 182 4 1 chr11 47662317 47663764 -103119789 - ALR/Alpha Satellite centromeric 0 1450 1 938 180 4 0 chr11 47663872 47665387 -103118166 - ALR/Alpha Satellite centromeric 0 1520 1 1797 94 4 12 chr11 47665493 47665748 -103117805 + AluSx SINE Alu 40 292 -20 2336 84 0 7 chr11 47666123 47666431 -103117122 + AluSx SINE Alu 2 307 -5 310 282 168 0 chr11 47668514 47668663 -103114890 + MIR SINE MIR 60 233 -29 640 241 182 5 chr11 47668667 47668870 -103114683 + MIR SINE MIR 23 261 -1 209 327 106 18 chr11 47669363 47669476 -103114077 + MIR3 SINE MIR 83 205 -3 301 333 47 0 chr11 47672196 47672325 -103111228 - MIR SINE MIR -44 218 84 276 266 43 11 chr11 47673184 47673278 -103110275 - L2 LINE L2 -4 3268 3172 * 662 272 58 27 chr11 47673269 47673493 -103110060 - MIR SINE MIR -10 252 22 4915 163 24 23 chr11 47674329 47675239 -103108314 - MER49 LTR ERV1 -12 911 1 329 314 16 16 chr11 47675713 47675837 -103107716 - MIR SINE MIR -56 206 83 205 364 78 13 chr11 47675865 47676247 -103107306 + L3 LINE CR1 631 1107 -470 643 227 93 0 chr11 47677075 47677225 -103106328 + MER103 DNA DNA 2 165 -1 198 270 33 28 chr11 47677399 47677510 -103106043 + MIR SINE MIR 102 212 -50 272 286 170 14 chr11 47677738 47677885 -103105668 + MIR3 SINE MIR 18 187 -21 38 0 0 0 chr11 47678890 47678928 -103104625 + AT_rich Low_complexity Low_complexity 1 38 0 315 331 47 24 chr11 47679593 47679720 -103103833 - L2 LINE L2 -21 3251 3122 2204 107 3 0 chr11 47680951 47681261 -103102292 + AluSx SINE Alu 1 311 -1 207 325 97 18 chr11 47681269 47681383 -103102170 - MIR SINE MIR 0 262 140 2100 141 57 32 chr11 47681647 47682185 -103101368 - MLT2A2 LTR ERVL 0 554 1 188 268 54 0 chr11 47683272 47683328 -103100225 + MIR SINE MIR 108 166 -96 315 0 0 0 chr11 47683924 47683959 -103099594 + (TTA)n Simple_repeat Simple_repeat 2 36 0 540 273 40 11 chr11 47684313 47684490 -103099063 - MIR SINE MIR -64 144 9 1276 198 36 69 chr11 47685268 47685616 -103097937 + AluJb SINE Alu 1 302 0 348 215 37 56 chr11 47685625 47685732 -103097821 - L1MC4a LINE L1 -1896 5912 5808 520 248 36 0 chr11 47685865 47686002 -103097551 - L1ME3 LINE L1 -1 6161 6020 390 202 129 40 chr11 47686003 47686127 -103097426 + MIR SINE MIR 99 233 -29 184 224 0 61 chr11 47686099 47686148 -103097405 + L2 LINE L2 3251 3296 -17 * 357 86 0 0 chr11 47686226 47686284 -103097269 + (CA)n Simple_repeat Simple_repeat 2 59 0 209 198 143 0 chr11 47689314 47689405 -103094148 + MIR3 SINE MIR 82 185 -23 476 335 25 34 chr11 47691208 47691444 -103092109 + MIR SINE MIR 14 247 -15 324 298 35 28 chr11 47692253 47692395 -103091158 - MIR SINE MIR -58 150 7 422 314 52 0 chr11 47693203 47693356 -103090197 - MIR SINE MIR -35 227 67 297 295 72 7 chr11 47693593 47693732 -103089821 + MIR SINE MIR 103 250 -12 428 366 30 53 chr11 47694098 47694568 -103088985 + L3 LINE CR1 333 791 -786 180 234 109 31 chr11 47694721 47694785 -103088768 + MIR3 SINE MIR 121 189 -19 567 248 89 0 chr11 47695713 47695870 -103087683 - MIR SINE MIR -20 242 72 27 62 0 0 chr11 47696070 47696118 -103087435 + GC_rich Low_complexity Low_complexity 1 48 0 220 260 106 41 chr11 47696917 47697040 -103086513 + MIR3 SINE MIR 58 188 -20 536 300 121 9 chr11 47697231 47697454 -103086099 + MIR SINE MIR 3 250 -12 180 351 50 72 chr11 47698280 47698639 -103084914 - L2 LINE L2 -7 3265 2915 696 285 74 8 chr11 47698647 47698894 -103084659 - MIR SINE MIR -2 260 1 186 43 0 0 chr11 47699202 47699225 -103084328 + (TG)n Simple_repeat Simple_repeat 2 24 0 331 311 60 13 chr11 47699600 47699751 -103083802 + MIR3 SINE MIR 36 193 -15 314 219 24 24 chr11 47701448 47701530 -103082023 + MER90 LTR ERV1 501 582 -32 407 282 48 89 chr11 47701662 47701953 -103081600 + MER90-int LTR ERV1 2680 2958 -1689 421 348 29 46 chr11 47702814 47703334 -103080219 + MER90-int LTR ERV1 6133 6643 -158 357 147 73 0 chr11 47703503 47703571 -103079982 + MER90 LTR ERV1 1 73 -502 * 1689 196 35 14 chr11 47703561 47703928 -103079625 + MER90 LTR ERV1 233 607 -7 3949 124 7 0 chr11 47705426 47706013 -103077540 + LTR10C LTR ERV1 1 591 0 352 194 56 46 chr11 47706593 47706701 -103076852 + MIR3 SINE MIR 91 199 -9 312 27 0 0 chr11 47707079 47707116 -103076437 + (TC)n Simple_repeat Simple_repeat 2 38 0 197 228 35 114 chr11 47708060 47708174 -103075379 - MIR3 SINE MIR -103 105 1 236 174 0 0 chr11 47708584 47708630 -103074923 + MIR SINE MIR 101 146 -62 2276 120 0 0 chr11 47709142 47709443 -103074110 - AluSx SINE Alu -11 301 1 1585 137 10 95 chr11 47709574 47709702 -103073851 + AluJb SINE Alu 3 140 -172 1978 122 0 21 chr11 47709702 47709988 -103073565 + AluSx SINE Alu 33 312 0 1585 137 10 95 chr11 47709988 47710165 -103073388 + AluJb SINE Alu 140 282 -30 582 273 124 10 chr11 47710334 47710543 -103073010 - L1ME LINE L1 -328 5793 5561 231 154 51 0 chr11 47710627 47710666 -103072887 + L2 LINE L2 3226 3266 -6 251 367 41 15 chr11 47711723 47711919 -103071634 + L2 LINE L2 2383 2583 -731 208 305 61 30 chr11 47712098 47712262 -103071291 + L2 LINE L2 2855 3023 -249 518 301 38 20 chr11 47712405 47712697 -103070856 + HAL1 LINE L1 153 449 -2058 724 291 81 59 chr11 47712747 47713355 -103070198 + HAL1 LINE L1 573 1193 -1314 1206 188 24 5 chr11 47713376 47713583 -103069970 + AluJo SINE Alu 2 212 -100 275 81 0 0 chr11 47713600 47713637 -103069916 - Alu SINE Alu -265 37 1 567 135 11 11 chr11 47713637 47713726 -103069827 + AluJo SINE Alu 202 290 -22 837 234 62 0 chr11 47713735 47713944 -103069609 + HAL1 LINE L1 1194 1415 -1092 665 199 92 32 chr11 47713986 47714098 -103069455 - MER96B DNA MER1_type? -3 414 310 2437 110 0 0 chr11 47714098 47714408 -103069145 + AluSx SINE Alu 1 310 -2 665 199 92 32 chr11 47714408 47714546 -103069007 - MER96B DNA MER1_type? -107 310 149 316 263 0 13 chr11 47714553 47714629 -103068924 + MER96B DNA MER1_type? 343 417 0 1279 235 115 93 chr11 47714649 47714737 -103068816 + HAL1 LINE L1 1493 1578 -929 1814 133 66 0 chr11 47714737 47715008 -103068545 + AluSx SINE Alu 9 297 -15 1279 235 115 93 chr11 47715008 47715740 -103067813 + HAL1 LINE L1 1578 2342 -165 1831 156 0 3 chr11 47715740 47716047 -103067506 - AluJb SINE Alu 0 306 1 1279 235 115 93 chr11 47716047 47716217 -103067336 + HAL1 LINE L1 2342 2507 0 216 67 0 0 chr11 47716541 47716571 -103066982 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 429 257 120 36 chr11 47716611 47716818 -103066735 + MIR SINE MIR 22 248 -14 288 0 0 0 chr11 47717525 47717557 -103065996 + (T)n Simple_repeat Simple_repeat 1 32 0 2361 58 3 52 chr11 47717826 47718135 -103065418 - AluY SINE Alu -17 294 1 182 259 34 0 chr11 47718171 47718231 -103065322 + L2 LINE L2 2866 2910 -362 601 189 107 20 chr11 47718816 47719012 -103064541 - Charlie4 DNA MER1_type 0 1961 1749 874 153 11 11 chr11 47719019 47719196 -103064357 + CT-rich Low_complexity Low_complexity 4 180 0 1897 140 42 0 chr11 47719202 47719488 -103064065 - AluJo SINE Alu -14 298 1 526 173 182 80 chr11 47719489 47719714 -103063839 - Charlie4 DNA MER1_type -1686 275 28 233 212 30 61 chr11 47719839 47719905 -103063648 - L2 LINE L2 -4 3309 3246 2120 141 0 0 chr11 47720242 47720539 -103063014 - AluSq SINE Alu -16 297 1 417 242 299 0 chr11 47720596 47720790 -103062763 - MLT1H LTR MaLR 0 549 298 497 283 128 27 chr11 47721534 47721753 -103061800 + MIR SINE MIR 22 262 0 2091 121 49 44 chr11 47722014 47722280 -103061273 + L1MA9 LINE L1 5900 6170 -142 1742 165 0 4 chr11 47722280 47722547 -103061006 + AluJo SINE Alu 36 301 -11 2091 121 49 44 chr11 47722547 47722686 -103060867 + L1MA9 LINE L1 6170 6307 -5 756 170 0 44 chr11 47723023 47723158 -103060395 + FLAM_A SINE Alu 5 133 0 21 36 0 0 chr11 47723299 47723327 -103060226 + GC_rich Low_complexity Low_complexity 1 28 0 2605 122 50 83 chr11 47723379 47724072 -103059481 + SVA Other Other 393 868 -536 2056 142 0 10 chr11 47724791 47725100 -103058453 - AluSx SINE Alu -6 306 1 281 211 164 58 chr11 47726311 47726415 -103057138 + L2 LINE L2 3199 3313 0 269 304 89 93 chr11 47726666 47726923 -103056630 + L2 LINE L2 3001 3286 -27 1294 314 176 31 chr11 47727428 47728412 -103055141 - L3 LINE CR1 -126 1451 326 396 0 0 0 chr11 47728462 47728506 -103055047 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 304 295 51 0 chr11 47730678 47730756 -103052797 + L2 LINE L2 3147 3228 -44 798 298 253 17 chr11 47730807 47731451 -103052102 + L2 LINE L2 2004 2799 -515 246 353 108 0 chr11 47731929 47732031 -103051522 - L2 LINE L2 -16 3297 3185 191 311 45 38 chr11 47732134 47732266 -103051287 - L2 LINE L2 -80 3233 3101 273 29 0 0 chr11 47732654 47732688 -103050865 + (GA)n Simple_repeat Simple_repeat 1 34 0 218 363 29 0 chr11 47733152 47733254 -103050299 + MIR SINE MIR 93 197 -65 329 256 80 29 chr11 47734111 47734248 -103049305 - MIR SINE MIR -20 242 99 290 288 6 69 chr11 47734555 47734715 -103048838 - MIR SINE MIR -50 212 63 329 204 124 44 chr11 47735588 47735701 -103047852 + MIR SINE MIR 31 152 -56 181 250 171 11 chr11 47736173 47736261 -103047292 + L2 LINE L2 1923 2024 -1290 723 283 71 45 chr11 47737175 47737486 -103046067 + L2 LINE L2 2953 3271 -1 629 281 222 13 chr11 47738441 47738747 -103044806 + L2 LINE L2 2931 3300 -13 207 100 0 0 chr11 47738747 47738777 -103044776 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 600 295 68 25 chr11 47738901 47739138 -103044415 - MIR SINE MIR -8 254 8 1843 135 71 15 chr11 47739514 47739839 -103043714 + MER61A LTR ERV1 1 343 0 218 345 0 0 chr11 47740602 47740660 -103042893 + MIR3 SINE MIR 144 201 -7 213 154 0 0 chr11 47741112 47741151 -103042402 + (TG)n Simple_repeat Simple_repeat 1 39 0 346 307 104 0 chr11 47741744 47741975 -103041578 - L1ME4a LINE L1 -209 5912 5658 650 215 51 56 chr11 47744018 47744213 -103039340 + MIR SINE MIR 1 194 -68 3360 94 14 18 chr11 47744803 47745301 -103038252 + LTR10D LTR ERV1 18 513 0 401 275 9 9 chr11 47746010 47746119 -103037434 - MER5A DNA MER1_type -74 115 7 261 208 28 28 chr11 47746509 47746581 -103036972 - MIR SINE MIR -72 136 65 321 294 37 11 chr11 47747456 47747563 -103035990 + MIR SINE MIR 19 131 -77 1853 156 30 19 chr11 47747773 47748144 -103035409 - L1MA6 LINE L1 0 6300 5926 31 170 0 0 chr11 47748320 47748367 -103035186 + GC_rich Low_complexity Low_complexity 1 47 0 441 465 0 0 chr11 47748367 47748537 -103035016 + G-rich Low_complexity Low_complexity 1 170 0 25 69 0 0 chr11 47748537 47748566 -103034987 + GC_rich Low_complexity Low_complexity 1 29 0 6975 63 5 40 chr11 47748592 47749616 -103033937 + SVA Other Other 433 1386 0 351 294 67 8 chr11 47750153 47750272 -103033281 - MIR SINE MIR -51 211 86 615 249 240 39 chr11 47750272 47750714 -103032839 + MLT1H LTR MaLR 1 531 -18 2160 134 73 18 chr11 47750766 47751109 -103032444 - THE1B LTR MaLR -2 362 1 337 273 180 19 chr11 47751109 47751270 -103032283 + MIR SINE MIR 22 208 -54 21 0 0 0 chr11 47751975 47751996 -103031557 + AT_rich Low_complexity Low_complexity 1 21 0 310 269 13 0 chr11 47752165 47752243 -103031310 + MIR SINE MIR 66 144 -64 682 203 116 84 chr11 47752273 47752652 -103030901 - MLT1G3 LTR MaLR -42 500 83 364 289 122 72 chr11 47752943 47753362 -103030191 - L2 LINE L2 -29 3243 2804 414 272 18 12 chr11 47753381 47753518 -103030035 - MIR SINE MIR -56 152 17 184 276 17 17 chr11 47754044 47754102 -103029451 + MIR SINE MIR 65 122 -86 415 289 14 14 chr11 47754170 47754312 -103029241 + LTR33 LTR ERVL 32 173 -348 321 254 144 40 chr11 47754401 47754464 -103029089 + LTR33 LTR ERVL 292 347 -174 2615 105 66 17 chr11 47754464 47754805 -103028748 + MSTA LTR MaLR 1 367 -61 2284 109 0 0 chr11 47754805 47755099 -103028454 - AluSx SINE Alu -16 296 3 2615 105 66 17 chr11 47755099 47755165 -103028388 + MSTA LTR MaLR 367 428 0 321 254 144 40 chr11 47755165 47755302 -103028251 + LTR33 LTR ERVL 347 513 -8 229 210 16 0 chr11 47755526 47755588 -103027965 - L1ME1 LINE L1 -5 6161 6099 1290 170 48 125 chr11 47755595 47755751 -103027802 + MLT1A1 LTR MaLR 1 167 -198 2267 104 3 0 chr11 47755751 47756040 -103027513 + AluSq SINE Alu 1 290 -23 1290 170 48 125 chr11 47756040 47756260 -103027293 + MLT1A1 LTR MaLR 167 348 -17 2477 91 0 3 chr11 47756348 47756657 -103026896 - AluY SINE Alu -3 308 1 267 330 85 0 chr11 47757124 47757218 -103026335 + L2 LINE L2 3134 3235 -37 312 241 60 0 chr11 47757230 47757313 -103026240 - L2 LINE L2 0 3313 3226 1384 124 0 0 chr11 47757358 47757543 -103026010 - AluSx SINE Alu -13 299 115 835 103 0 0 chr11 47757618 47757725 -103025828 - AluSx SINE Alu -206 107 1 229 116 23 23 chr11 47757725 47757768 -103025785 + LTR50 LTR ERVL 34 76 -719 317 259 92 24 chr11 47757851 47758064 -103025489 + LTR50 LTR ERVL 209 478 -317 2182 125 20 0 chr11 47758064 47758368 -103025185 - AluSq SINE Alu -3 310 1 360 206 138 25 chr11 47758395 47758555 -103024998 + LTR50 LTR ERVL 617 794 -1 651 311 69 45 chr11 47758629 47759104 -103024449 - L2 LINE L2 -170 3143 2643 215 286 0 0 chr11 47759135 47759191 -103024362 - MIR SINE MIR -67 141 86 198 280 120 10 chr11 47759508 47759608 -103023945 + L2 LINE L2 2467 2577 -737 219 299 75 0 chr11 47759636 47759703 -103023850 - MER91C DNA MER1_type -34 106 35 293 231 280 21 chr11 47761067 47761210 -103022343 + MIR SINE MIR 52 231 -31 481 265 165 62 chr11 47761217 47761538 -103022015 - L2 LINE L2 -39 3274 2921 280 234 373 8 chr11 47761972 47762216 -103021337 - L1ME4a LINE L1 -3 6118 5786 1098 71 0 21 chr11 47762352 47762493 -103021060 - AluSp/q SINE Alu -13 300 163 23 54 0 0 chr11 47762541 47762578 -103020975 + AT_rich Low_complexity Low_complexity 1 37 0 207 299 13 13 chr11 47762956 47763033 -103020520 + GA-rich Low_complexity Low_complexity 2 78 0 2082 125 3 26 chr11 47763898 47764203 -103019350 - AluSx SINE Alu -14 298 1 281 317 42 21 chr11 47764410 47764552 -103019001 - MIR3 SINE MIR -15 193 49 219 283 0 33 chr11 47765646 47765706 -103017847 + MIR SINE MIR 205 262 0 253 269 108 0 chr11 47771692 47771785 -103011768 - MIR3 SINE MIR -16 192 90 575 246 121 56 chr11 47772360 47772575 -103010978 - MIR SINE MIR -16 246 18 306 273 216 18 chr11 47774336 47774563 -103008990 - L2 LINE L2 -93 3220 2949 303 197 0 53 chr11 47774602 47774678 -103008875 - MIR SINE MIR -128 134 63 242 279 0 7 chr11 47775066 47775220 -103008333 + (TG)n Simple_repeat Simple_repeat 1 153 0 2025 109 64 0 chr11 47775582 47775865 -103007688 + AluSx SINE Alu 1 301 -11 440 115 0 39 chr11 47776080 47776158 -103007395 - BC200 scRNA scRNA -53 147 73 321 110 68 41 chr11 47776167 47776240 -103007313 - MIR SINE MIR -88 174 100 247 318 91 27 chr11 47776310 47776420 -103007133 - MIR SINE MIR -115 147 31 333 111 12 148 chr11 47777048 47777084 -103006469 + MER5A DNA MER1_type 40 61 -128 2304 85 41 0 chr11 47777084 47777377 -103006176 + AluSg SINE Alu 1 305 -5 333 111 12 148 chr11 47777377 47777421 -103006132 + MER5A DNA MER1_type 61 109 -80 969 149 6 19 chr11 47777443 47777604 -103005949 - AluJ SINE Alu -18 294 136 403 217 42 42 chr11 47777981 47778101 -103005452 + MLT1H LTR MaLR 138 257 -292 401 343 69 0 chr11 47778328 47778503 -103005050 + MLT1K LTR MaLR 280 466 -122 290 310 108 33 chr11 47778512 47778719 -103004834 - MLT1K LTR MaLR -4 584 362 3715 179 91 12 chr11 47778719 47779491 -103004062 + MER21B LTR ERV1 1 833 -30 915 206 31 55 chr11 47779817 47779889 -103003664 - MLT1C LTR MaLR -6 461 389 2321 105 0 0 chr11 47779889 47780184 -103003369 - AluSx SINE Alu -17 295 1 915 206 31 55 chr11 47780184 47780368 -103003185 - MLT1C LTR MaLR -78 389 211 968 109 8 0 chr11 47780404 47780532 -103003021 - AluJ SINE Alu -179 133 5 553 177 127 44 chr11 47780561 47780719 -103002834 - MLT1C LTR MaLR -290 177 7 2555 202 32 43 chr11 47780790 47781418 -103002135 - L1MC4a LINE L1 0 7808 7188 305 322 69 45 chr11 47781539 47781828 -103001725 - L1ME LINE L1 -323 5798 5503 2238 125 0 3 chr11 47781964 47782267 -103001286 - AluSx SINE Alu -10 302 1 4288 178 18 47 chr11 47782312 47782709 -103000844 - L1MB7 LINE L1 -1 6183 5776 2375 160 14 63 chr11 47782709 47783085 -103000468 - MSTB LTR MaLR -4 422 70 2062 139 0 0 chr11 47783085 47783373 -103000180 - AluSq SINE Alu -25 288 1 2375 160 14 63 chr11 47783373 47783440 -103000113 - MSTB LTR MaLR -356 70 1 4288 178 18 47 chr11 47783440 47783755 -102999798 - L1MB7 LINE L1 -408 5776 5453 2075 134 21 63 chr11 47783755 47784135 -102999418 + MER47A DNA MER2_type 1 364 -2 1863 159 0 54 chr11 47784135 47784449 -102999104 - AluJo SINE Alu -13 299 3 4288 178 18 47 chr11 47784449 47784633 -102998920 - L1MB7 LINE L1 -730 5454 5315 2353 93 0 13 chr11 47784633 47784934 -102998619 - AluSx SINE Alu -15 297 1 4288 178 18 47 chr11 47784934 47785062 -102998491 - L1MB7 LINE L1 -869 5315 5185 3129 101 10 39 chr11 47785062 47785143 -102998410 + MER75 DNA T2_type 11 93 -421 189 74 0 0 chr11 47785143 47785170 -102998383 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 2324 65 0 4 chr11 47785173 47785450 -102998103 - AluY SINE Alu -35 276 1 3129 101 10 39 chr11 47785450 47785880 -102997673 + MER75 DNA T2_type 95 511 -3 674 179 14 0 chr11 47785880 47786025 -102997528 - L1MB7 LINE L1 -954 5192 5046 2234 119 0 17 chr11 47786038 47786203 -102997350 - AluSx SINE Alu -15 297 138 2459 93 3 3 chr11 47786203 47786516 -102997037 - AluSp SINE Alu 0 313 1 2234 119 0 17 chr11 47786516 47786652 -102996901 - AluSx SINE Alu -174 138 1 488 242 187 27 chr11 47786654 47786873 -102996680 + MER112 DNA MER1_type 1 254 -6 2373 83 0 3 chr11 47786980 47787281 -102996272 - AluY SINE Alu -11 300 1 409 313 15 15 chr11 47787402 47787533 -102996020 - MER5A DNA MER1_type 0 189 59 1909 145 35 0 chr11 47787534 47787823 -102995730 - AluJb SINE Alu -13 299 1 194 180 0 60 chr11 47787890 47787940 -102995613 + MIR SINE MIR 24 70 -138 472 248 8 0 chr11 47788178 47788299 -102995254 + Charlie8 DNA MER1_type 85 206 -2211 346 226 20 59 chr11 47788606 47788708 -102994845 + MIR SINE MIR 48 145 -117 185 225 75 0 chr11 47789209 47789249 -102994304 + MIR SINE MIR 220 262 0 345 288 85 26 chr11 47789863 47790016 -102993537 + MIR SINE MIR 23 184 -78 311 221 57 58 chr11 47790137 47790242 -102993311 - MIR SINE MIR -56 206 104 659 206 100 0 chr11 47790311 47790471 -102993082 - MIR3 SINE MIR -17 191 16 262 264 0 38 chr11 47790675 47790781 -102992772 + CT-rich Low_complexity Low_complexity 2 103 0 245 255 121 28 chr11 47791275 47791416 -102992137 + MER103 DNA DNA 2 155 -11 1820 131 0 31 chr11 47792618 47792928 -102990625 - AluSx SINE Alu 0 301 1 4067 146 30 10 chr11 47793545 47794266 -102989287 - L1MB3 LINE L1 -4 6179 5444 827 243 109 59 chr11 47794271 47794609 -102988944 - MLT1J LTR MaLR -72 439 85 369 0 0 0 chr11 47795169 47795210 -102988343 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 273 246 200 0 chr11 47795431 47795561 -102987992 - L2 LINE L2 -213 3059 2904 635 246 146 65 chr11 47795980 47796312 -102987241 + MLT1H LTR MaLR 120 492 -57 1894 152 18 0 chr11 47796312 47796617 -102986936 + AluSx SINE Alu 1 310 0 635 246 146 65 chr11 47796617 47796681 -102986872 + MLT1H LTR MaLR 492 549 0 199 430 16 0 chr11 47796688 47796809 -102986744 + L2 LINE L2 2915 3037 -235 192 357 0 36 chr11 47796924 47797008 -102986545 + L2 LINE L2 3232 3312 -1 479 264 283 0 chr11 47798266 47798425 -102985128 + MIR SINE MIR 51 254 -8 213 39 0 0 chr11 47798427 47798453 -102985100 + (CAT)n Simple_repeat Simple_repeat 2 27 0 308 186 43 43 chr11 47798455 47798525 -102985028 + L2 LINE L2 3203 3272 0 677 292 62 24 chr11 47799454 47799872 -102983681 - L1MEc LINE L1 -3451 2764 2331 2239 82 0 39 chr11 47800158 47800463 -102983090 - AluY SINE Alu -18 293 1 763 215 0 0 chr11 47800502 47800632 -102982921 - FLAM_A SINE Alu -3 130 1 1525 203 64 13 chr11 47800699 47801073 -102982480 - L1ME1 LINE L1 -4 6162 5770 * 2297 242 46 50 chr11 47801040 47801383 -102982170 - L1MEc LINE L1 -4610 1786 1443 2318 102 0 3 chr11 47801383 47801687 -102981866 + AluSp SINE Alu 1 303 -10 2297 242 46 50 chr11 47801687 47801828 -102981725 - L1MEc LINE L1 -4953 1443 1303 1716 169 39 29 chr11 47801828 47802136 -102981417 + AluSx SINE Alu 1 311 -1 2297 242 46 50 chr11 47802136 47802645 -102980908 - L1MEc LINE L1 -5093 1303 796 497 193 24 159 chr11 47802645 47802924 -102980629 - LTR41 LTR ERVL 0 795 536 375 274 97 0 chr11 47803326 47803439 -102980114 - LTR41 LTR ERVL -640 133 10 1429 322 57 13 chr11 47803443 47804083 -102979470 - L1MEc LINE L1 -5599 797 129 1693 143 48 31 chr11 47804083 47804321 -102979232 - AluJb SINE Alu -14 298 66 1844 140 63 33 chr11 47804321 47804685 -102978868 - THE1C LTR MaLR 0 375 1 10398 112 41 7 chr11 47804685 47806213 -102977340 - THE1C-int LTR MaLR 0 1580 2 2065 136 29 32 chr11 47806214 47806590 -102976963 - THE1C LTR MaLR 0 375 1 1693 143 48 31 chr11 47806590 47806641 -102976912 - AluJb SINE Alu -245 67 1 24 100 0 0 chr11 47806746 47806826 -102976727 + AT_rich Low_complexity Low_complexity 1 80 0 720 304 72 19 chr11 47806970 47807598 -102975955 - L1MEc LINE L1 -4725 1585 925 * 39414 83 7 6 chr11 47807588 47813723 -102969830 - L1PA6 LINE L1 0 6154 16 746 327 49 54 chr11 47813842 47814674 -102968879 - L1MEc LINE L1 -5286 833 6 241 245 0 0 chr11 47814706 47814755 -102968798 + L2 LINE L2 3265 3313 0 186 298 0 0 chr11 47814808 47814855 -102968698 + L2 LINE L2 3197 3243 -70 569 234 169 0 chr11 47815158 47815312 -102968241 + MER5A DNA MER1_type 10 189 0 2183 124 53 28 chr11 47815454 47815809 -102967744 + THE1B LTR MaLR 1 364 0 543 257 0 0 chr11 47815810 47815919 -102967634 - MER81 DNA DNA -5 109 1 257 275 0 14 chr11 47817330 47817399 -102966154 + MIR SINE MIR 24 91 -171 2521 144 0 83 chr11 47817445 47817917 -102965636 + Tigger2a DNA MER2_type 2 434 0 1145 286 93 19 chr11 47818458 47818877 -102964676 - LTR16A LTR ERVL 0 450 1 204 267 67 128 chr11 47819075 47819270 -102964283 + L2 LINE L2 2996 3178 -94 318 289 0 0 chr11 47819354 47819451 -102964102 - MIR SINE MIR -14 248 152 5424 169 70 27 chr11 47819474 47821218 -102962335 + MER52A LTR ERV1 1 1755 0 281 256 0 12 chr11 47821615 47821697 -102961856 - L1ME3A LINE L1 -286 5884 5804 1794 199 22 11 chr11 47822476 47822837 -102960716 - MLT1A1 LTR MaLR 0 365 1 676 297 50 8 chr11 47823172 47823411 -102960142 + MIR SINE MIR 2 250 -12 215 191 24 0 chr11 47823470 47823512 -102960041 - L2 LINE L2 -7 3265 3223 430 231 50 16 chr11 47824036 47824157 -102959396 - LTR67 LTR ERVL -378 179 55 1649 156 17 33 chr11 47824297 47824599 -102958954 + AluSx SINE Alu 1 297 -15 1084 155 16 16 chr11 47824624 47824817 -102958736 - L1PB4 LINE L1 -3 6153 5961 306 0 0 0 chr11 47824975 47825009 -102958544 + (GA)n Simple_repeat Simple_repeat 2 35 0 409 216 59 10 chr11 47825017 47825119 -102958434 + MIR SINE MIR 100 206 -56 379 208 168 32 chr11 47826575 47826700 -102956853 - MLT1K LTR MaLR -10 578 437 518 283 98 49 chr11 47826837 47827102 -102956451 - MLT1K LTR MaLR -309 279 2 696 320 104 36 chr11 47827241 47827800 -102955753 - L1M4 LINE L1 -3257 2889 2293 702 129 0 0 chr11 47828199 47828300 -102955253 - MSTD LTR MaLR -295 101 1 336 225 195 30 chr11 47828301 47828470 -102955083 - L1MC5 LINE L1 -100 7861 7665 265 241 0 0 chr11 47828537 47828591 -102954962 - L1MC5 LINE L1 -609 7352 7299 277 243 168 22 chr11 47828622 47828807 -102954746 - LTR50 LTR ERVL -113 682 471 665 205 88 65 chr11 47828843 47829058 -102954495 - LTR50 LTR ERVL -573 222 3 310 209 0 0 chr11 47829120 47829187 -102954366 - L1MC5 LINE L1 -723 7238 7172 707 259 80 9 chr11 47829191 47829403 -102954150 + L3 LINE CR1 457 683 -894 957 168 26 42 chr11 47830252 47830443 -102953110 - MLT1F LTR MaLR -4 538 351 668 211 28 16 chr11 47831548 47831914 -102951639 + (TCCA)n Simple_repeat Simple_repeat 1 370 0 1780 249 59 2 chr11 47831923 47832344 -102951209 + LTR16A LTR ERVL 1 445 -5 479 320 108 62 chr11 47832398 47832786 -102950767 - L2 LINE L2 -1 3271 2866 306 366 41 17 chr11 47833480 47833652 -102949901 + L3 LINE CR1 1344 1519 -58 249 280 27 0 chr11 47833671 47833746 -102949807 + MIR SINE MIR 73 149 -113 1059 217 129 18 chr11 47833759 47833879 -102949674 + AluJb SINE Alu 1 106 -196 210 37 0 0 chr11 47833879 47833906 -102949647 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1059 217 129 18 chr11 47833906 47834057 -102949496 + AluJb SINE Alu 106 302 0 356 265 189 72 chr11 47834988 47835017 -102948536 + L2 LINE L2 2687 2711 -603 2115 104 7 3 chr11 47835017 47835324 -102948229 + AluSp SINE Alu 1 308 -5 356 265 189 72 chr11 47835324 47835543 -102948010 + L2 LINE L2 2711 2964 -350 198 103 0 0 chr11 47835930 47835959 -102947594 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 189 0 0 0 chr11 47837250 47837271 -102946282 + (A)n Simple_repeat Simple_repeat 1 21 0 291 157 14 14 chr11 47837401 47837471 -102946082 + L1ME4a LINE L1 6051 6120 -1 781 272 63 6 chr11 47837606 47837846 -102945707 + MIR SINE MIR 12 262 0 2590 256 99 26 chr11 47838193 47838904 -102944649 + L1MEc LINE L1 1261 2092 -4304 2057 117 0 0 chr11 47838904 47839187 -102944366 - AluSg1 SINE Alu -26 283 1 2590 256 99 26 chr11 47839187 47839652 -102943901 + L1MEc LINE L1 2092 2522 -3874 368 339 67 6 chr11 47839653 47839818 -102943735 + MIR SINE MIR 53 227 -35 1374 237 135 14 chr11 47840405 47840919 -102942634 - L2 LINE L2 0 3313 2730 476 337 43 27 chr11 47840918 47841102 -102942451 + MIR SINE MIR 69 255 -7 * 358 307 0 0 chr11 47841104 47841192 -102942361 + MIR3 SINE MIR 106 193 -15 572 174 28 0 chr11 47841737 47841846 -102941707 - MER117 DNA MER1_type -85 112 1 343 176 95 14 chr11 47841846 47841920 -102941633 - MIR3 SINE MIR -48 160 81 234 315 54 9 chr11 47842145 47842256 -102941297 + MLT1K LTR MaLR 96 211 -377 230 111 56 0 chr11 47842690 47842726 -102940827 - L2 LINE L2 -10 3303 3266 207 179 0 0 chr11 47842893 47842932 -102940621 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 1826 135 0 7 chr11 47842951 47843240 -102940313 - AluSg SINE Alu -21 289 3 485 128 155 0 chr11 47843911 47844059 -102939494 - AluSg SINE Alu -136 174 4 242 192 67 96 chr11 47844758 47844862 -102938691 + L2 LINE L2 3116 3216 -97 1038 262 77 41 chr11 47844866 47845255 -102938298 - LTR16C LTR ERVL 0 491 89 196 324 14 14 chr11 47845353 47845427 -102938126 + L2 LINE L2 3240 3313 0 341 225 11 22 chr11 47845589 47845678 -102937875 - MER103 DNA DNA -41 125 38 1697 90 0 4 chr11 47845702 47845935 -102937618 - AluSc SINE Alu -11 298 67 21 36 0 0 chr11 47846457 47846485 -102937068 + AT_rich Low_complexity Low_complexity 1 28 0 251 292 31 0 chr11 47846905 47846970 -102936583 - Charlie8 DNA MER1_type 0 2417 2351 1116 260 61 65 chr11 47847544 47848006 -102935547 - MLT1K LTR MaLR -4 584 125 321 322 144 0 chr11 47848061 47848207 -102935346 - MIR SINE MIR -16 246 80 269 222 16 16 chr11 47849509 47849572 -102933981 - L2 LINE L2 -1 3271 3209 486 243 18 9 chr11 47849824 47849935 -102933618 + MIR SINE MIR 76 187 -75 223 284 0 15 chr11 47850269 47850336 -102933217 + MIR3 SINE MIR 132 197 -11 278 269 0 0 chr11 47850817 47850884 -102932669 + Charlie8 DNA MER1_type 1349 1415 -1002 352 300 8 25 chr11 47851551 47851671 -102931882 + MIR SINE MIR 2 119 -143 242 273 15 0 chr11 47852022 47852088 -102931465 - MIR3 SINE MIR 0 208 142 1462 222 81 77 chr11 47852136 47852509 -102931044 - MLT1D LTR MaLR -8 497 120 2023 134 0 3 chr11 47852509 47852815 -102930738 - AluSq SINE Alu -8 305 1 1462 222 81 77 chr11 47852815 47852936 -102930617 - MLT1D LTR MaLR -385 120 1 3271 240 46 24 chr11 47852950 47853925 -102929628 - L1MC4a LINE L1 -2 7806 6810 1112 56 22 22 chr11 47853944 47854122 -102929431 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 755 153 14 0 chr11 47854124 47854268 -102929285 + CT-rich Low_complexity Low_complexity 3 148 0 355 353 111 0 chr11 47854554 47854744 -102928809 + MIR SINE MIR 17 227 -35 255 236 111 0 chr11 47855478 47855550 -102928003 - L2 LINE L2 -6 3266 3187 447 274 93 19 chr11 47855643 47856017 -102927536 - MER113 DNA MER1_type? 0 521 59 234 241 24 24 chr11 47856542 47856625 -102926928 - L2 LINE L2 -185 3087 3005 329 252 99 9 chr11 47856685 47856796 -102926757 + MIR SINE MIR 25 145 -63 734 181 141 65 chr11 47856950 47857270 -102926283 - LTR16A1 LTR ERVL 0 457 91 607 297 16 0 chr11 47858006 47858188 -102925365 + MIR SINE MIR 77 261 -1 383 287 148 0 chr11 47858204 47858380 -102925173 + MIR SINE MIR 55 255 -7 1336 245 117 45 chr11 47858507 47859062 -102924491 - MLT1G1 LTR MaLR 0 595 1 186 292 0 0 chr11 47859891 47859939 -102923614 - MIR SINE MIR -15 247 200 213 340 28 43 chr11 47859947 47860088 -102923465 + L2 LINE L2 3081 3219 -94 2093 118 21 0 chr11 47860315 47860602 -102922951 - AluSx SINE Alu -19 293 1 437 275 52 36 chr11 47860689 47860876 -102922677 - MIR3 SINE MIR -58 150 7 454 344 12 0 chr11 47860901 47861064 -102922489 - MIR3 SINE MIR -6 202 38 1706 139 119 39 chr11 47861629 47861813 -102921740 + THE1B LTR MaLR 1 169 -195 2229 99 0 0 chr11 47861813 47862122 -102921431 + AluSx SINE Alu 1 309 0 324 0 0 0 chr11 47862121 47862157 -102921396 + (CA)n Simple_repeat Simple_repeat 2 37 0 1706 139 119 39 chr11 47862122 47862308 -102921245 + THE1B LTR MaLR 169 364 0 402 292 26 31 chr11 47863396 47863614 -102919939 + MLT1H LTR MaLR 1 257 -229 243 286 14 100 chr11 47863644 47863784 -102919769 + MLT1H LTR MaLR 405 532 -17 419 282 40 8 chr11 47863811 47863935 -102919618 - MIR SINE MIR -59 203 76 242 311 67 97 chr11 47864780 47865047 -102918506 - L2 LINE L2 -3 3269 3011 289 333 130 33 chr11 47865584 47866007 -102917546 + L2 LINE L2 2825 3288 -25 241 288 0 0 chr11 47866037 47866096 -102917457 - MIR SINE MIR -87 175 117 301 236 34 0 chr11 47866609 47866714 -102916839 + MIR SINE MIR 80 147 -61 451 182 61 0 chr11 47867051 47867150 -102916403 + MIR3 SINE MIR 83 187 -21 636 293 95 5 chr11 47867640 47867862 -102915691 + MIR SINE MIR 21 262 0 538 314 59 15 chr11 47868073 47868277 -102915276 + MIR SINE MIR 3 215 -47 1507 177 16 25 chr11 47868278 47868595 -102914958 + MER33 DNA MER1_type 1 314 -10 383 285 230 0 chr11 47868671 47868836 -102914717 + MIR SINE MIR 49 251 -11 2258 124 3 0 chr11 47869857 47870163 -102913390 + AluSx SINE Alu 1 307 -5 311 240 0 0 chr11 47870344 47870419 -102913134 - MIR3 SINE MIR -28 180 106 603 279 135 0 chr11 47871043 47871258 -102912295 - MIR SINE MIR 0 262 19 183 266 0 0 chr11 47871276 47871340 -102912213 + (CATG)n Simple_repeat Simple_repeat 3 66 0 388 373 0 0 chr11 47871360 47871521 -102912032 + (CA)n Simple_repeat Simple_repeat 1 161 0 259 289 160 35 chr11 47871795 47872107 -102911446 - L3 LINE CR1 -107 1470 1120 382 302 16 8 chr11 47872640 47872766 -102910787 - L3 LINE CR1 -551 1026 900 317 340 117 20 chr11 47873968 47874215 -102909338 - L2 LINE L2 -1 3271 3001 485 306 112 13 chr11 47874247 47874479 -102909074 + L2 LINE L2 2375 2629 -685 916 296 38 64 chr11 47874481 47875012 -102908541 + MLT1K LTR MaLR 2 518 -70 309 328 20 35 chr11 47875382 47875569 -102907984 + L2 LINE L2 3107 3292 -21 1835 163 45 0 chr11 47875569 47875857 -102907696 - AluSx SINE Alu -11 301 1 236 303 97 21 chr11 47876163 47876308 -102907245 - MER103 DNA DNA -8 158 3 196 295 64 0 chr11 47876528 47876606 -102906947 - L2 LINE L2 -575 2739 2657 1216 253 137 21 chr11 47876905 47877525 -102906028 + L2 LINE L2 2464 3171 -142 2026 220 97 19 chr11 47877525 47878102 -102905451 + MLT1E3 LTR MaLR 3 624 0 1216 253 137 21 chr11 47878102 47878264 -102905289 + L2 LINE L2 3171 3313 0 424 234 117 7 chr11 47879012 47879157 -102904396 - MIR3 SINE MIR 0 208 48 370 301 82 0 chr11 47879324 47879470 -102904083 - MIR3 SINE MIR -32 176 19 262 185 0 56 chr11 47880054 47880135 -102903418 - MIR SINE MIR -77 185 112 736 116 20 62 chr11 47880205 47880351 -102903202 + FRAM SINE Alu 13 152 -24 575 211 92 0 chr11 47880364 47880516 -102903037 + MIR SINE MIR 39 204 -58 450 136 0 0 chr11 47881887 47881968 -102901585 + (TG)n Simple_repeat Simple_repeat 2 82 0 602 238 119 6 chr11 47882337 47882497 -102901056 - MER45A DNA AcHobo 0 178 1 585 172 26 17 chr11 47883208 47883324 -102900229 + MLT1F LTR MaLR 397 513 -29 210 196 20 0 chr11 47883358 47883409 -102900144 + (TTCA)n Simple_repeat Simple_repeat 2 53 0 212 241 0 74 chr11 47883409 47883463 -102900090 - L2 LINE L2 0 3313 3264 2175 114 73 15 chr11 47883832 47884175 -102899378 + THE1B LTR MaLR 2 364 0 1273 275 126 22 chr11 47884382 47884891 -102898662 - MLT1L LTR MaLR -6 609 48 505 257 143 0 chr11 47885172 47885347 -102898206 - MIR SINE MIR -34 228 29 191 364 10 0 chr11 47885497 47885596 -102897957 + MIR SINE MIR 89 188 -74 530 310 148 33 chr11 47885675 47886007 -102897546 + L2 LINE L2 2944 3313 0 419 360 50 9 chr11 47886315 47886537 -102897016 + MIR SINE MIR 18 248 -14 708 284 42 0 chr11 47886560 47886750 -102896803 - MIR SINE MIR -11 251 54 320 271 39 8 chr11 47887010 47887139 -102896414 - L1ME4a LINE L1 -7 6114 5982 411 259 18 36 chr11 47887140 47887252 -102896301 - L2 LINE L2 0 3272 3163 342 274 142 0 chr11 47888322 47888428 -102895125 + L2 LINE L2 3187 3307 -6 300 292 10 0 chr11 47889651 47889747 -102893806 - MIR SINE MIR -71 137 41 655 284 35 9 chr11 47890063 47890292 -102893261 + MIR SINE MIR 21 255 -7 688 185 68 0 chr11 47890924 47891086 -102892467 + MER53 DNA DNA 10 182 -7 352 223 45 62 chr11 47891097 47891209 -102892344 + MIR SINE MIR 76 185 -77 724 247 103 31 chr11 47891227 47891450 -102892103 + MIR SINE MIR 1 239 -23 222 156 22 0 chr11 47891472 47891517 -102892036 + (TTA)n Simple_repeat Simple_repeat 2 47 0 789 217 100 25 chr11 47891787 47892027 -102891526 + L2 LINE L2 2380 2637 -677 1714 167 10 56 chr11 47892987 47893206 -102890347 - AluJb SINE Alu -20 292 89 2278 132 0 0 chr11 47893206 47893516 -102890037 - AluSx SINE Alu -2 310 1 1714 167 10 56 chr11 47893516 47893602 -102889951 - AluJb SINE Alu -223 89 1 483 283 134 0 chr11 47893677 47893864 -102889689 - MIR SINE MIR 0 262 51 1065 115 38 0 chr11 47894002 47894159 -102889394 - AluSp SINE Alu -11 302 140 1359 145 177 0 chr11 47894880 47895128 -102888425 - AluJo SINE Alu -18 294 3 1761 169 28 10 chr11 47895254 47895597 -102887956 - MLT1B LTR MaLR -8 366 3 447 256 211 13 chr11 47896452 47896608 -102886945 + MIR SINE MIR 70 256 -6 194 235 49 12 chr11 47896763 47896844 -102886709 + MIR3 SINE MIR 125 208 0 24 0 0 0 chr11 47897120 47897144 -102886409 + AT_rich Low_complexity Low_complexity 1 24 0 189 209 119 0 chr11 47897380 47897447 -102886106 - MIR SINE MIR -90 118 44 181 308 168 19 chr11 47897498 47897605 -102885948 + MIR SINE MIR 108 230 -32 190 293 0 35 chr11 47897908 47897966 -102885587 - MIR SINE MIR -116 92 37 241 239 60 0 chr11 47898089 47898156 -102885397 - MIR SINE MIR -62 146 76 299 263 53 0 chr11 47898390 47898466 -102885087 - MIR SINE MIR -132 130 51 2343 121 0 0 chr11 47899081 47899386 -102884167 - AluSx SINE Alu -6 306 2 203 200 25 0 chr11 47899520 47899560 -102883993 + CT-rich Low_complexity Low_complexity 2 42 0 569 297 80 5 chr11 47900210 47900422 -102883131 - MIR SINE MIR -3 259 32 393 301 116 6 chr11 47900436 47900609 -102882944 - MIR SINE MIR -12 250 59 1670 142 112 0 chr11 47900625 47900885 -102882668 - AluJb SINE Alu -23 289 1 223 387 0 13 chr11 47900897 47900972 -102882581 - MIR SINE MIR -185 77 4 382 220 20 30 chr11 47901348 47901448 -102882105 - MLT1I LTR MaLR -2 407 309 979 260 140 43 chr11 47901449 47901942 -102881611 - MLT1H LTR MaLR -2 547 7 1033 253 57 27 chr11 47901951 47902248 -102881305 - MLT1I LTR MaLR -102 307 2 614 276 121 0 chr11 47902251 47902450 -102881103 - MIR SINE MIR -9 253 31 200 191 48 0 chr11 47902633 47902675 -102880878 - L2 LINE L2 -71 3242 3199 242 361 10 0 chr11 47903192 47903289 -102880264 - L3 LINE CR1 -73 1504 1407 247 225 150 62 chr11 47904076 47904156 -102879397 + MIR SINE MIR 108 195 -13 239 277 95 66 chr11 47904216 47904353 -102879200 + MIR SINE MIR 13 145 -63 206 261 92 0 chr11 47904617 47904682 -102878871 + MIR SINE MIR 124 194 -68 329 329 73 22 chr11 47904865 47905002 -102878551 - MIR SINE MIR -111 151 8 1158 200 114 60 chr11 47905204 47905634 -102877919 + MLT1C LTR MaLR 1 453 -14 490 314 26 3 chr11 47906514 47906703 -102876850 - MIR SINE MIR 0 262 69 410 237 43 0 chr11 47907182 47907275 -102876278 + MIR SINE MIR 39 135 -73 219 301 56 63 chr11 47907440 47907583 -102875970 - L2 LINE L2 -222 3050 2909 25 0 0 0 chr11 47908157 47908182 -102875371 + AT_rich Low_complexity Low_complexity 1 25 0 2466 56 0 19 chr11 47908182 47908506 -102875047 - L1PA2 LINE L1 0 6155 5838 369 244 0 23 chr11 47908677 47908763 -102874790 + MIR3 SINE MIR 104 187 -21 240 247 153 0 chr11 47908897 47908982 -102874571 - MIR SINE MIR -62 200 103 277 239 62 0 chr11 47909103 47909186 -102874367 - MIR SINE MIR -70 192 104 601 245 74 12 chr11 47910102 47910265 -102873288 + MIR3 SINE MIR 15 187 -21 374 310 84 7 chr11 47910405 47910560 -102872993 - MIR SINE MIR -62 200 34 271 302 38 38 chr11 47911286 47911392 -102872161 + MIR SINE MIR 17 122 -86 334 214 117 39 chr11 47911457 47911560 -102871993 + MIR SINE MIR 1 111 -151 526 248 131 86 chr11 47911560 47911915 -102871638 - MLT1H LTR MaLR 0 549 171 1960 169 0 0 chr11 47911915 47912211 -102871342 - AluJb SINE Alu -14 298 3 526 248 131 86 chr11 47912211 47912275 -102871278 - MLT1H LTR MaLR -378 171 111 483 178 9 56 chr11 47912339 47912446 -102871107 + MIR SINE MIR 109 210 -52 1562 155 44 19 chr11 47912819 47913090 -102870463 - AluJo SINE Alu -32 280 3 443 295 29 40 chr11 47913648 47913821 -102869732 - L2 LINE L2 -5 3308 3138 366 235 84 25 chr11 47914786 47914905 -102868648 + MIR SINE MIR 21 146 -62 641 249 54 50 chr11 47914973 47915194 -102868359 - MIR SINE MIR -13 249 28 360 243 84 19 chr11 47915242 47915349 -102868204 - MIR3 SINE MIR -14 194 81 483 288 15 60 chr11 47915637 47915867 -102867686 + L1ME4a LINE L1 5641 5859 -262 2425 98 19 58 chr11 47915867 47916243 -102867310 - THE1B LTR MaLR 0 364 4 483 288 15 60 chr11 47916243 47916279 -102867274 + L1ME4a LINE L1 5859 5895 -226 189 280 30 70 chr11 47916452 47916552 -102867001 + L3 LINE CR1 1426 1521 -56 1448 274 47 25 chr11 47916750 47917352 -102866201 - L2 LINE L2 -1 3312 2683 2223 127 122 13 chr11 47917504 47917890 -102865663 + MSTA LTR MaLR 1 428 0 623 233 155 21 chr11 47918091 47918284 -102865269 - L2 LINE L2 -1 3312 3094 266 303 13 0 chr11 47918420 47918496 -102865057 + L2 LINE L2 3233 3309 -4 1738 176 66 24 chr11 47918850 47919125 -102864428 - MSTD LTR MaLR 0 396 99 2718 127 34 5 chr11 47919125 47919541 -102864012 + MSTA LTR MaLR 1 428 0 1738 176 66 24 chr11 47919541 47919645 -102863908 - MSTD LTR MaLR -297 99 1 398 221 87 0 chr11 47920002 47920129 -102863424 + MER103 DNA DNA 26 163 -3 192 321 196 9 chr11 47920455 47920567 -102862986 + L2 LINE L2 2866 2998 -274 2428 101 5 65 chr11 47920645 47921032 -102862521 + THE1B LTR MaLR 1 364 0 2451 204 90 46 chr11 47921251 47922137 -102861416 - L1MC5 LINE L1 -15 7946 7022 374 225 50 135 chr11 47922164 47922364 -102861189 - MIR SINE MIR -2 260 78 443 308 55 22 chr11 47922371 47922553 -102861000 - MIR SINE MIR 0 262 75 215 271 0 68 chr11 47922566 47922625 -102860928 - L2 LINE L2 -20 3293 3239 312 292 133 0 chr11 47922675 47922795 -102860758 - MIR SINE MIR -79 183 48 632 294 27 5 chr11 47924006 47924193 -102859360 + MER102b DNA MER1_type 107 297 -44 538 288 100 66 chr11 47924375 47924695 -102858858 + L2 LINE L2 2933 3263 -9 309 226 0 0 chr11 47925101 47925163 -102858390 + MIR SINE MIR 93 154 -108 564 227 8 15 chr11 47925174 47925306 -102858247 + L1MB7 LINE L1 5584 5714 -452 1859 146 148 0 chr11 47925306 47925677 -102857876 - MSTA LTR MaLR 0 428 3 1364 213 86 21 chr11 47925678 47926111 -102857442 + L1MB7 LINE L1 5712 6172 -12 2118 113 3 3 chr11 47926127 47926447 -102857106 + AluSx SINE Alu 1 320 0 1113 212 155 42 chr11 47928748 47929317 -102854236 - L2 LINE L2 0 3313 2661 804 286 35 27 chr11 47929318 47929577 -102853976 - MIR SINE MIR 0 262 2 530 274 85 7 chr11 47929598 47929751 -102853802 + MIR SINE MIR 28 192 -70 271 270 38 29 chr11 47929903 47930016 -102853537 + MIR3 SINE MIR 74 186 -22 409 329 56 12 chr11 47930734 47930895 -102852658 + L2 LINE L2 3105 3272 0 335 201 287 46 chr11 47931402 47931576 -102851977 - L3 LINE CR1 -130 1447 1232 624 325 58 17 chr11 47931827 47932067 -102851486 - MIR SINE MIR -1 261 12 339 186 0 0 chr11 47932108 47932144 -102851409 + (CA)n Simple_repeat Simple_repeat 1 39 -31 276 30 0 0 chr11 47932144 47932177 -102851376 + (TC)n Simple_repeat Simple_repeat 1 33 0 339 186 0 0 chr11 47932177 47932210 -102851343 + (CA)n Simple_repeat Simple_repeat 38 70 0 605 301 128 26 chr11 47932324 47932636 -102850917 + L2 LINE L2 2921 3264 -8 209 288 6 94 chr11 47932696 47932856 -102850697 + MIR SINE MIR 117 262 0 196 324 69 10 chr11 47932880 47932982 -102850571 + MIR SINE MIR 96 203 -59 646 204 242 0 chr11 47933560 47933717 -102849836 - MIR SINE MIR -38 224 30 277 87 0 0 chr11 47934442 47934488 -102849065 - MADE1 DNA Mariner -34 46 1 2794 230 28 26 chr11 47934494 47935269 -102848284 - L1ME1 LINE L1 -83 6083 5307 858 201 6 6 chr11 47935269 47935433 -102848120 + FRAM SINE Alu 1 164 -2 423 272 20 68 chr11 47935442 47935589 -102847964 + L2 LINE L2 3162 3301 -12 270 0 0 0 chr11 47935590 47935620 -102847933 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 514 206 82 48 chr11 47936848 47936979 -102846574 + MIR SINE MIR 41 179 -83 2132 154 85 23 chr11 47936979 47937324 -102846229 + MLT2D LTR ERVL 1 374 -40 423 0 0 0 chr11 47937324 47937371 -102846182 + (CA)n Simple_repeat Simple_repeat 1 47 0 2132 154 85 23 chr11 47937371 47937415 -102846138 + MLT2D LTR ERVL 374 414 0 514 206 82 48 chr11 47937415 47937429 -102846124 + MIR SINE MIR 179 191 -71 688 209 111 22 chr11 47937440 47937665 -102845888 + L1ME2 LINE L1 5875 6119 -45 2023 150 3 3 chr11 47937668 47937968 -102845585 + AluSx SINE Alu 1 300 -12 4145 184 62 10 chr11 47937968 47939166 -102844387 + L1MB8 LINE L1 4914 6177 -1 365 171 11 102 chr11 47939258 47939346 -102844207 - MIR SINE MIR -94 168 89 268 317 49 58 chr11 47939537 47939761 -102843792 - MIR SINE MIR -13 249 28 341 291 43 8 chr11 47939994 47940111 -102843442 + MIR3 SINE MIR 45 165 -43 382 277 121 68 chr11 47940849 47941055 -102842498 + MIR SINE MIR 36 252 -10 217 268 73 24 chr11 47941107 47941189 -102842364 + L2 LINE L2 3170 3255 -17 3088 156 53 8 chr11 47941989 47942521 -102841032 - MER21A LTR ERV1 0 931 376 1276 149 95 0 chr11 47942526 47942767 -102840786 - MER21A LTR ERV1 -667 264 1 2034 260 104 56 chr11 47942784 47943082 -102840471 + L1ME1 LINE L1 37 319 -6077 210 37 0 0 chr11 47943082 47943109 -102840444 + (TG)n Simple_repeat Simple_repeat 1 27 0 * 384 40 0 0 chr11 47943108 47943158 -102840395 + (GA)n Simple_repeat Simple_repeat 1 50 0 2034 260 104 56 chr11 47943109 47944005 -102839548 + L1ME1 LINE L1 319 1237 -5159 4808 248 71 10 chr11 47944007 47945593 -102837960 + L1ME1 LINE L1 2179 3861 -2354 2013 146 38 0 chr11 47945606 47945949 -102837604 + L1MD1 LINE L1 5887 6242 0 2664 220 39 13 chr11 47945960 47946633 -102836920 + L1ME1 LINE L1 5542 6231 -4 261 270 68 27 chr11 47946663 47946737 -102836816 - MIR3 SINE MIR -27 181 105 298 254 28 151 chr11 47946891 47947070 -102836483 - MER91A DNA MER1_type -13 177 27 1491 279 73 2 chr11 47948138 47948576 -102834977 - L2 LINE L2 0 3313 2845 375 356 122 5 chr11 47948579 47948801 -102834752 + L2 LINE L2 2482 2729 -585 306 197 31 87 chr11 47948813 47948940 -102834613 + MLT1I LTR MaLR 41 160 -389 320 207 117 18 chr11 47949111 47949222 -102834331 + MLT1I LTR MaLR 288 409 0 657 316 57 48 chr11 47949233 47949715 -102833838 + L2 LINE L2 2762 3268 -45 1587 270 21 4 chr11 47949718 47950268 -102833285 + L1M4 LINE L1 3195 3821 -2325 236 287 99 0 chr11 47950264 47950365 -102833188 - L1M4 LINE L1 -2234 3912 3802 * 1363 234 82 31 chr11 47950367 47950896 -102832657 + L2 LINE L2 2762 3313 0 196 279 228 13 chr11 47950925 47951004 -102832549 - L2 LINE L2 -8 3264 3169 2760 200 64 24 chr11 47951076 47951682 -102831871 + MER82 DNA MER2_type 2 635 -18 1581 140 0 0 chr11 47951682 47951917 -102831636 + MER46A DNA MER2_type 1 235 -1 2760 200 64 24 chr11 47951917 47951936 -102831617 + MER82 DNA MER2_type 635 652 -1 709 265 23 111 chr11 47952874 47953217 -102830336 - L2 LINE L2 -50 3222 2910 372 274 97 91 chr11 47953201 47953257 -102830296 - MIR3 SINE MIR -15 193 139 * 2508 65 3 0 chr11 47953257 47953551 -102830002 - AluY SINE Alu -16 295 1 372 274 97 91 chr11 47953551 47953669 -102829884 - MIR3 SINE MIR -69 139 18 411 292 9 9 chr11 47954146 47954259 -102829294 - MIR3 SINE MIR -34 174 62 335 215 140 37 chr11 47954541 47954648 -102828905 + MIR SINE MIR 74 191 -71 240 184 0 0 chr11 47954701 47954750 -102828803 + CT-rich Low_complexity Low_complexity 1 49 0 2158 189 90 48 chr11 47954753 47955251 -102828302 + MLT2B1 LTR ERVL 2 520 0 2167 137 0 0 chr11 47955674 47955973 -102827580 - AluSx SINE Alu -13 299 1 513 293 55 77 chr11 47956609 47956988 -102826565 + L2 LINE L2 2937 3307 -6 507 283 88 6 chr11 47957140 47957299 -102826254 + MIR SINE MIR 8 179 -83 315 234 73 40 chr11 47957303 47957427 -102826126 - MIR SINE MIR -88 174 47 334 307 92 64 chr11 47957860 47958186 -102825367 + MER102b DNA MER1_type 5 339 -2 465 244 16 20 chr11 47958214 47958363 -102825190 - MIR3 SINE MIR -48 160 15 335 287 81 40 chr11 47958982 47959156 -102824397 - MIR SINE MIR -40 222 42 223 269 138 48 chr11 47959485 47959652 -102823901 + L2 LINE L2 2911 3092 -180 645 311 168 21 chr11 47959821 47960207 -102823346 + L2 LINE L2 2816 3258 -14 584 134 47 0 chr11 47960245 47960372 -102823181 + GA-rich Low_complexity Low_complexity 4 136 0 362 274 74 24 chr11 47961428 47961586 -102821967 - MIR3 SINE MIR -14 194 26 1261 268 40 3 chr11 47961637 47961966 -102821587 + MLT1K LTR MaLR 248 588 0 574 218 201 0 chr11 47962570 47962749 -102820804 + MIR SINE MIR 48 262 0 382 267 195 10 chr11 47963335 47963530 -102820023 - MIR SINE MIR -12 250 20 773 261 77 8 chr11 47964189 47964423 -102819130 + MLT1J2 LTR MaLR 201 450 0 344 311 28 39 chr11 47964657 47964818 -102818735 + MIR3 SINE MIR 30 189 -54 1751 199 19 53 chr11 47965356 47965789 -102817764 - MER47B DNA MER2_type 0 418 1 329 243 177 44 chr11 47966905 47967086 -102816467 - MIR SINE MIR -10 252 48 237 248 148 20 chr11 47967532 47967633 -102815920 - MIR3 SINE MIR -14 194 81 249 289 47 13 chr11 47968184 47968333 -102815220 + (TCTCTG)n Simple_repeat Simple_repeat 3 156 0 3570 157 35 35 chr11 47969274 47969825 -102813728 - L1MA10 LINE L1 -1 6333 5780 2516 90 3 0 chr11 47969825 47970136 -102813417 - AluSq SINE Alu -1 312 1 3570 157 35 35 chr11 47970136 47970359 -102813194 - L1MA10 LINE L1 -553 5781 5559 239 311 37 1 chr11 47970360 47970460 -102813093 - MIR SINE MIR -61 147 45 691 238 18 0 chr11 47971800 47971964 -102811589 + MIR SINE MIR 15 181 -81 335 251 190 37 chr11 47972278 47972441 -102811112 - MIR SINE MIR -24 238 51 230 250 31 31 chr11 47972583 47972647 -102810906 - L1P LINE L1 -5684 462 399 2356 116 3 0 chr11 47972722 47973033 -102810520 + AluSx SINE Alu 1 312 0 444 288 61 12 chr11 47973163 47973326 -102810227 + MIR SINE MIR 20 190 -72 283 298 35 9 chr11 47973392 47973506 -102810047 + MIR3 SINE MIR 82 198 -10 545 291 99 5 chr11 47974015 47974228 -102809325 + MIR SINE MIR 25 257 -5 348 312 50 55 chr11 47974205 47974407 -102809146 - MIR SINE MIR -50 212 12 * 389 289 137 26 chr11 47974576 47974766 -102808787 - MIR SINE MIR -12 250 40 * 485 288 9 76 chr11 47974719 47974976 -102808577 + MIR SINE MIR 12 249 -13 711 177 114 40 chr11 47975149 47975324 -102808229 - MIR SINE MIR -67 195 8 364 278 28 49 chr11 47975833 47975941 -102807612 - MIR3 SINE MIR -32 176 70 2419 154 34 7 chr11 47975941 47976377 -102807176 - MER83 LTR ERV1 0 448 1 364 278 28 49 chr11 47976377 47976412 -102807141 - MIR3 SINE MIR -138 70 36 417 244 35 17 chr11 47976514 47976629 -102806924 + L2 LINE L2 3191 3307 -6 372 294 96 23 chr11 47977270 47977488 -102806065 - MIR SINE MIR -16 246 13 247 338 93 14 chr11 47977832 47977971 -102805582 + MIR SINE MIR 33 182 -80 365 146 35 187 chr11 47978143 47978314 -102805239 - MLT1H LTR MaLR 0 549 405 248 274 68 26 chr11 47978450 47978567 -102804986 - MLT1I LTR MaLR -272 137 16 363 223 96 0 chr11 47979189 47979283 -102804270 + MIR3 SINE MIR 99 201 -7 2370 109 0 0 chr11 47979357 47979661 -102803892 - AluSg SINE Alu -6 304 1 521 208 11 109 chr11 47980638 47980786 -102802767 + MIR SINE MIR 27 161 -63 440 373 61 14 chr11 47980860 47981175 -102802378 + L2 LINE L2 2593 2929 -385 2628 108 49 2 chr11 47981175 47981584 -102801969 - MSTA LTR MaLR 0 428 1 440 373 61 14 chr11 47981584 47981630 -102801923 + L2 LINE L2 2929 2971 -343 306 314 130 16 chr11 47981887 47982072 -102801481 - MIR SINE MIR -44 218 13 585 315 26 66 chr11 47983201 47983550 -102800003 + L2 LINE L2 2954 3288 -25 2539 179 36 32 chr11 47983684 47984214 -102799339 + MER74A LTR ERVL 27 558 0 214 292 31 0 chr11 47985319 47985384 -102798169 + MIR SINE MIR 8 74 -188 634 246 65 82 chr11 47985385 47985678 -102797875 + LTR16C LTR ERVL 34 321 -170 1304 106 32 0 chr11 47985712 47985900 -102797653 - MSTA LTR MaLR -234 194 1 479 220 10 0 chr11 47985900 47985998 -102797555 + LTR16C LTR ERVL 393 491 0 607 291 34 17 chr11 47986003 47986182 -102797371 + MIR SINE MIR 70 251 -11 820 220 135 14 chr11 47986720 47987084 -102796469 - LTR16A1 LTR ERVL -2 455 5 245 321 153 7 chr11 47987420 47987557 -102795996 - MIR SINE MIR -93 169 13 365 257 44 29 chr11 47988152 47988288 -102795265 + MIR3 SINE MIR 13 150 -58 957 243 65 35 chr11 47988358 47988696 -102794857 + L2 LINE L2 2879 3226 -87 2104 131 0 30 chr11 47989423 47989728 -102793825 + AluSx SINE Alu 1 296 -16 418 262 36 48 chr11 47989742 47989910 -102793643 + MIR3 SINE MIR 10 175 -33 393 280 19 9 chr11 47989930 47990037 -102793516 + MER117 DNA MER1_type 57 164 -33 607 212 57 65 chr11 47990256 47990501 -102793052 - MER112 DNA MER1_type -9 251 9 353 248 54 47 chr11 47990504 47990588 -102792965 - MER94 DNA DNA -2 132 45 2565 184 86 8 chr11 47990588 47991114 -102792439 + MLT1F1 LTR MaLR 1 567 0 353 248 54 47 chr11 47991114 47991158 -102792395 - MER94 DNA DNA -89 45 3 952 272 78 67 chr11 47991432 47991998 -102791555 + L3 LINE CR1 498 1069 -508 225 0 0 0 chr11 47992506 47992531 -102791022 + (CA)n Simple_repeat Simple_repeat 1 25 0 1041 320 41 10 chr11 47992765 47993177 -102790376 - LTR16A LTR ERVL -15 435 11 541 277 153 0 chr11 47994478 47994680 -102788873 + MIR SINE MIR 5 237 -25 482 299 32 21 chr11 47995057 47995244 -102788309 - MIR3 SINE MIR -17 191 3 629 246 164 15 chr11 47995370 47995565 -102787988 + MIR SINE MIR 39 262 0 409 284 71 30 chr11 47995583 47995752 -102787801 + MER91A DNA MER1_type 1 176 -20 220 205 0 0 chr11 47995742 47995781 -102787772 + MER91A DNA MER1_type 133 171 -19 * 1921 40 0 76 chr11 47996308 47996559 -102786994 - AluY SINE Alu -15 296 65 601 287 110 23 chr11 47996769 47997157 -102786396 - LTR16A1 LTR ERVL 0 478 73 1728 185 13 10 chr11 47997525 47997833 -102785720 - AluJo SINE Alu -3 309 1 1814 209 76 14 chr11 47998121 47998556 -102784997 + MLT1C LTR MaLR 6 467 0 1430 220 7 99 chr11 47998843 47999188 -102784365 - MLT2D LTR ERVL -3 411 113 2112 128 3 28 chr11 47999188 47999508 -102784045 + AluJb SINE Alu 1 312 0 1430 220 7 99 chr11 47999508 47999598 -102783955 - MLT2D LTR ERVL -301 113 16 291 271 3 0 chr11 47999605 47999687 -102783866 - MIR SINE MIR -69 139 68 414 294 37 22 chr11 47999972 48000108 -102783445 - MIR SINE MIR -107 155 18 248 200 238 19 chr11 48000345 48000448 -102783105 + MLT1L LTR MaLR 30 155 -460 568 167 0 0 chr11 48000448 48000538 -102783015 - MER58B DNA MER1_type 0 341 252 373 254 0 0 chr11 48000681 48000752 -102782801 - MER58B DNA MER1_type -99 242 172 300 286 0 0 chr11 48001173 48001243 -102782310 + GA-rich Low_complexity Low_complexity 4 73 0 278 267 114 76 chr11 48001813 48001918 -102781635 - MER5A DNA MER1_type -24 165 57 271 299 33 30 chr11 48002215 48002486 -102781067 + L1M4 LINE L1 2317 2588 -3558 1000 205 82 16 chr11 48002501 48002804 -102780749 + MER33 DNA MER1_type 2 324 0 186 293 85 0 chr11 48003016 48003098 -102780455 + MIR SINE MIR 112 200 -62 2461 101 0 0 chr11 48003300 48003608 -102779945 + AluSx SINE Alu 1 308 -4 495 250 0 0 chr11 48003836 48003936 -102779617 - MER81 DNA DNA 0 114 15 195 287 139 30 chr11 48003988 48004089 -102779464 - MER5A DNA MER1_type -30 159 48 352 282 211 13 chr11 48004925 48005081 -102778472 + MIR SINE MIR 20 206 -56 1696 171 125 0 chr11 48005135 48005487 -102778066 + MSTD LTR MaLR 1 396 0 981 212 71 106 chr11 48005966 48006531 -102777022 - MLT1H LTR MaLR -4 545 1 536 263 56 6 chr11 48006724 48006903 -102776650 + MIR SINE MIR 37 224 -38 381 337 27 13 chr11 48007605 48007765 -102775788 + MIR SINE MIR 33 195 -55 732 306 34 0 chr11 48008006 48008241 -102775312 - MIR SINE MIR -19 243 1 1803 136 0 8 chr11 48008251 48008515 -102775038 - AluJb SINE Alu -16 296 35 349 318 122 1 chr11 48008663 48008802 -102774751 - MIR SINE MIR -42 166 8 1286 197 129 50 chr11 48009077 48009518 -102774035 + Charlie4a DNA MER1_type 22 497 -11 664 184 11 69 chr11 48009519 48009693 -102773860 - MIR SINE MIR -84 178 15 317 324 120 0 chr11 48009764 48009906 -102773647 + L2 LINE L2 3111 3269 -3 504 270 133 22 chr11 48010125 48010351 -102773202 + MIR SINE MIR 8 258 -4 353 278 139 4 chr11 48010414 48010535 -102773018 + MIR3 SINE MIR 25 155 -53 2000 108 0 28 chr11 48010915 48011239 -102772314 - L1PA13 LINE L1 0 6163 5849 219 286 0 0 chr11 48011274 48011330 -102772223 + C-rich Low_complexity Low_complexity 1 56 0 307 154 0 0 chr11 48012103 48012155 -102771398 + MIR SINE MIR 81 132 -76 1833 112 67 4 chr11 48012227 48012530 -102771023 + AluSx SINE Alu 1 320 0 478 294 197 5 chr11 48012667 48012885 -102770668 - MIR SINE MIR 0 262 3 21 0 0 0 chr11 48013537 48013558 -102769995 + AT_rich Low_complexity Low_complexity 1 21 0 1781 185 10 7 chr11 48013936 48014233 -102769320 + AluJb SINE Alu 5 302 -10 240 243 29 29 chr11 48014266 48014336 -102769217 + MER5B DNA MER1_type 109 178 0 310 332 72 31 chr11 48014756 48014979 -102768574 + MIR SINE MIR 1 232 -30 1515 109 9 4 chr11 48015189 48015418 -102768135 - MER30 DNA MER1_type 0 230 1 777 201 46 6 chr11 48015673 48015847 -102767706 - MIR SINE MIR -72 190 10 515 309 25 30 chr11 48016637 48016845 -102766708 + MIR SINE MIR 48 256 -6 335 257 19 19 chr11 48017595 48017700 -102765853 - MIR SINE MIR -109 153 49 509 281 145 31 chr11 48018936 48019164 -102764389 - MIR SINE MIR -1 261 8 363 235 82 60 chr11 48019249 48019432 -102764121 + MER106A DNA MER1_type 1 187 -49 203 318 0 0 chr11 48020331 48020394 -102763159 + L2 LINE L2 2927 2989 -283 823 275 40 16 chr11 48020888 48021135 -102762418 + MIR SINE MIR 9 261 -1 361 339 8 0 chr11 48021164 48021291 -102762262 + (TGGA)n Simple_repeat Simple_repeat 4 131 0 340 279 197 10 chr11 48021662 48021870 -102761683 - MIR SINE MIR -13 249 3 1263 297 58 21 chr11 48022558 48023002 -102760551 + L1M4 LINE L1 3745 4228 -1918 2146 109 54 14 chr11 48023002 48023352 -102760201 - THE1B LTR MaLR 0 364 1 1263 297 58 21 chr11 48023352 48023630 -102759923 + L1M4 LINE L1 4228 4494 -1652 235 243 131 9 chr11 48023836 48023943 -102759610 - L1ME4a LINE L1 -189 5932 5813 180 344 0 16 chr11 48023984 48024045 -102759508 - MIR SINE MIR -56 152 93 230 278 56 0 chr11 48024059 48024131 -102759422 - MIR SINE MIR -71 191 116 250 286 77 11 chr11 48024224 48024315 -102759238 - L2 LINE L2 0 3313 3217 600 226 116 73 chr11 48024362 48024480 -102759073 - MLT1C LTR MaLR -153 314 203 2909 25 0 0 chr11 48024480 48024798 -102758755 - AluYb8 SINE Alu 0 318 1 600 226 116 73 chr11 48024798 48024980 -102758573 - MLT1C LTR MaLR -264 203 1 4019 248 145 25 chr11 48025004 48025752 -102757801 - L2 LINE L2 -109 3204 2547 2102 138 19 21 chr11 48025752 48026128 -102757425 - THE1C LTR MaLR 0 375 1 4019 248 145 25 chr11 48026128 48026312 -102757241 - L2 LINE L2 -766 2547 2386 2196 113 0 3 chr11 48026312 48026603 -102756950 + AluSg SINE Alu 1 290 -20 4019 248 145 25 chr11 48026603 48027438 -102756115 - L2 LINE L2 -927 2386 1236 259 180 63 171 chr11 48028175 48028247 -102755306 - MER5B DNA MER1_type -77 101 43 2256 110 28 6 chr11 48028247 48028603 -102754950 + THE1B LTR MaLR 1 364 0 259 180 63 171 chr11 48028603 48028641 -102754912 - MER5B DNA MER1_type -135 43 3 547 244 149 25 chr11 48028710 48028911 -102754642 - MIR SINE MIR -6 256 31 205 191 24 0 chr11 48030266 48030308 -102753245 + GA-rich Low_complexity Low_complexity 6 48 0 252 277 0 12 chr11 48030638 48030721 -102752832 + GA-rich Low_complexity Low_complexity 1 82 0 335 298 8 0 chr11 48030750 48030874 -102752679 + CT-rich Low_complexity Low_complexity 2 126 0 210 118 0 0 chr11 48031753 48031787 -102751766 + (GA)n Simple_repeat Simple_repeat 1 34 0 465 247 141 39 chr11 48031870 48032090 -102751463 - MIR SINE MIR -13 249 19 392 234 83 35 chr11 48034002 48034147 -102749406 + MER103 DNA DNA 3 154 -12 245 203 176 0 chr11 48034728 48034802 -102748751 + MIR SINE MIR 101 187 -75 574 296 52 35 chr11 48034880 48034918 -102748635 + MIR SINE MIR 29 65 -197 1257 178 26 105 chr11 48034918 48035260 -102748293 - AluYb8 SINE Alu -3 315 1 574 296 52 35 chr11 48035260 48035451 -102748102 + MIR SINE MIR 65 262 0 689 243 139 68 chr11 48036134 48036500 -102747053 + MLT1J2 LTR MaLR 59 450 0 291 297 42 48 chr11 48036758 48036923 -102746630 + L2 LINE L2 2852 3015 -257 180 356 14 0 chr11 48037009 48037082 -102746471 + L2 LINE L2 3187 3260 -12 544 290 141 36 chr11 48037121 48037511 -102746042 - L2 LINE L2 -64 3249 2819 187 290 161 23 chr11 48037597 48037814 -102745739 - L2 LINE L2 -685 2629 2383 360 267 48 0 chr11 48037945 48038062 -102745491 + L1MC4a LINE L1 5712 5839 -282 258 32 0 0 chr11 48038542 48038573 -102744980 + (A)n Simple_repeat Simple_repeat 1 31 0 2592 58 0 3 chr11 48038816 48039128 -102744425 - AluY SINE Alu 0 311 1 215 296 0 14 chr11 48039648 48039719 -102743834 - L2 LINE L2 0 3313 3244 257 314 91 33 chr11 48039831 48039952 -102743601 - MIR SINE MIR -127 135 8 1973 99 8 0 chr11 48039953 48040206 -102743347 - AluSx SINE Alu -6 306 52 939 213 70 1 chr11 48040220 48040453 -102743100 - MIR SINE MIR 0 262 17 343 293 8 30 chr11 48041162 48041295 -102742258 - MIR SINE MIR -48 214 85 187 259 37 0 chr11 48041385 48041439 -102742114 + L2 LINE L2 3256 3311 -2 433 228 0 0 chr11 48041999 48042078 -102741475 + MER21B LTR ERV1 12 90 -773 3554 212 71 12 chr11 48042100 48042903 -102740650 + MER21B LTR ERV1 14 863 0 339 288 78 41 chr11 48043588 48043807 -102739746 - Charlie8 DNA MER1_type -2093 324 98 745 248 36 56 chr11 48043951 48044347 -102739206 + L1ME LINE L1 5192 5582 -580 288 255 123 0 chr11 48044431 48044576 -102738977 + L1ME LINE L1 5589 5759 -407 1029 182 16 16 chr11 48044923 48045115 -102738438 + MER21B LTR ERV1 276 467 -396 377 298 15 23 chr11 48045857 48045988 -102737565 + MIR3 SINE MIR 77 206 -2 225 204 0 41 chr11 48046047 48046096 -102737457 + L2 LINE L2 3257 3303 -10 273 261 162 18 chr11 48046177 48046288 -102737265 + MIR SINE MIR 124 250 -12 225 132 0 0 chr11 48046375 48046413 -102737140 + (CA)n Simple_repeat Simple_repeat 2 39 0 362 307 21 21 chr11 48046745 48046885 -102736668 + GA-rich Low_complexity Low_complexity 2 141 0 405 254 54 8 chr11 48047241 48047371 -102736182 + LTR33 LTR ERVL 374 509 -12 316 208 10 83 chr11 48047431 48047527 -102736026 - MIR SINE MIR -68 140 52 195 180 2 97 chr11 48048507 48048578 -102734975 + MIR SINE MIR 80 145 -63 354 185 193 34 chr11 48049857 48049976 -102733577 + MIR3 SINE MIR 34 171 -37 212 263 62 0 chr11 48051488 48051568 -102731985 - MIR SINE MIR -131 131 47 * 360 244 58 58 chr11 48051553 48051709 -102731844 + MIR SINE MIR 50 205 -57 291 250 15 83 chr11 48053144 48053276 -102730277 + MIR SINE MIR 90 212 -50 468 296 134 6 chr11 48053548 48053727 -102729826 - MIR SINE MIR -52 210 9 304 167 0 0 chr11 48053848 48053896 -102729657 - MLT1H LTR MaLR 0 549 502 686 285 211 14 chr11 48053939 48054300 -102729253 - MLT1H LTR MaLR 0 549 118 196 228 13 101 chr11 48054459 48054538 -102729015 - MIR SINE MIR -72 190 119 2071 216 28 30 chr11 48055257 48055417 -102728136 - Charlie4a DNA MER1_type -1455 506 347 2345 121 0 0 chr11 48055417 48055724 -102727829 + AluSq SINE Alu 1 307 -6 2071 216 28 30 chr11 48055724 48056067 -102727486 - Charlie4a DNA MER1_type -1614 347 4 196 243 200 0 chr11 48056081 48056151 -102727402 + MIR SINE MIR 61 144 -118 * 362 274 89 6 chr11 48056146 48056303 -102727250 + MIR SINE MIR 26 195 -67 554 264 17 34 chr11 48057492 48057670 -102725883 - MIR SINE MIR -42 220 46 305 270 0 0 chr11 48057819 48057893 -102725660 - MIR SINE MIR -116 146 73 442 285 112 43 chr11 48057947 48058252 -102725301 - L2 LINE L2 -8 3305 2980 215 274 0 0 chr11 48058253 48058304 -102725249 + L2 LINE L2 3262 3312 -1 236 286 134 0 chr11 48059268 48059380 -102724173 + L2 LINE L2 2919 3045 -227 1660 247 16 11 chr11 48059516 48059961 -102723592 + MLT1C LTR MaLR 21 467 0 192 289 19 0 chr11 48060008 48060060 -102723493 + L2 LINE L2 3261 3313 0 426 294 67 83 chr11 48060290 48060650 -102722903 + L2 LINE L2 2917 3270 -2 2110 78 63 0 chr11 48060682 48061002 -102722551 + AluY SINE Alu 1 311 0 1740 138 46 0 chr11 48061170 48061431 -102722122 + AluJo SINE Alu 1 273 -39 261 0 0 0 chr11 48061441 48061470 -102722083 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 352 258 207 24 chr11 48061723 48061936 -102721617 - MIR SINE MIR -1 261 10 410 324 103 12 chr11 48062221 48062625 -102720928 + L3 LINE CR1 948 1460 -117 206 254 175 0 chr11 48062835 48062898 -102720655 - MER5B DNA MER1_type -104 74 1 2439 101 0 0 chr11 48062901 48063208 -102720345 + AluSp SINE Alu 1 307 -6 1780 213 51 10 chr11 48063510 48063900 -102719653 + MLT2D LTR ERVL 1 406 -8 2417 97 0 3 chr11 48064014 48064322 -102719231 + AluSx SINE Alu 1 307 -5 200 182 0 0 chr11 48064810 48064843 -102718710 + GA-rich Low_complexity Low_complexity 4 36 0 709 303 64 5 chr11 48064873 48065091 -102718462 - MIR SINE MIR -20 242 12 860 313 73 43 chr11 48065708 48066515 -102717038 + L2 LINE L2 2442 3267 -5 635 274 160 0 chr11 48067696 48067915 -102715638 + MIR SINE MIR 8 261 -1 385 260 107 20 chr11 48067912 48068062 -102715491 - MIR SINE MIR -62 200 38 * 413 231 194 6 chr11 48068310 48068470 -102715083 + MIR3 SINE MIR 11 200 -8 221 338 0 0 chr11 48068711 48068788 -102714765 - MIR SINE MIR -84 178 102 2313 92 10 3 chr11 48069428 48069723 -102713830 + AluSx SINE Alu 1 297 -15 186 229 0 0 chr11 48070045 48070080 -102713473 + L2 LINE L2 3222 3256 -16 291 221 163 0 chr11 48070891 48070977 -102712576 - MIR SINE MIR -55 153 54 199 319 139 40 chr11 48071249 48071500 -102712053 + L2 LINE L2 2972 3247 -25 669 193 0 0 chr11 48071509 48071659 -102711894 + (TGGG)n Simple_repeat Simple_repeat 2 151 0 569 258 18 26 chr11 48071899 48072074 -102711479 - MER5A DNA MER1_type -2 187 2 573 290 111 6 chr11 48072767 48073006 -102710547 - MIR SINE MIR -14 248 5 399 292 105 23 chr11 48073473 48073644 -102709909 + MIR3 SINE MIR 2 186 -22 206 339 60 52 chr11 48073912 48074163 -102709390 - L2 LINE L2 -615 2699 2447 319 277 153 8 chr11 48074237 48074455 -102709098 + MIR SINE MIR 8 261 -1 404 311 74 42 chr11 48074498 48074688 -102708865 - MIR SINE MIR 0 262 67 412 253 110 20 chr11 48076019 48076165 -102707388 - MIR SINE MIR -22 240 82 1761 85 0 0 chr11 48077180 48077392 -102706161 - AluSq SINE Alu -64 249 38 229 321 31 41 chr11 48077405 48077601 -102705952 - L1MC4a LINE L1 -1862 5946 5753 189 94 0 0 chr11 48078287 48078319 -102705234 + (A)n Simple_repeat Simple_repeat 1 32 0 244 279 18 9 chr11 48078320 48078431 -102705122 + L1ME LINE L1 5654 5765 -356 806 182 0 0 chr11 48128476 48128597 -102654956 - FRAM SINE Alu -55 121 1 225 0 0 0 chr11 48129587 48129612 -102653941 + (TG)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr11 48131691 48131720 -102651833 + GC_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr11 48131720 48131744 -102651809 + (CTG)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr11 48131890 48131912 -102651641 + GC_rich Low_complexity Low_complexity 1 22 0 193 303 0 26 chr11 48132422 48132498 -102651055 + MIR SINE MIR 110 183 -79 2970 3 0 0 chr11 48132504 48132814 -102650739 + AluYa5 SINE Alu 2 311 0 277 250 0 14 chr11 48133934 48134006 -102649547 + MIR SINE MIR 80 150 -112 1635 141 10 75 chr11 48134121 48134256 -102649297 + AluJb SINE Alu 1 143 -184 2074 138 0 0 chr11 48134256 48134582 -102648971 + AluSx SINE Alu 1 326 0 1635 141 10 75 chr11 48134582 48134792 -102648761 + AluJb SINE Alu 143 327 0 1502 80 11 0 chr11 48134919 48135106 -102648447 - AluSq SINE Alu -124 189 1 492 155 29 10 chr11 48135111 48135214 -102648339 - L1M4 LINE L1 -356 5822 5718 2095 236 42 70 chr11 48135214 48135266 -102648287 - L1ME3A LINE L1 -213 5957 5905 1753 138 128 53 chr11 48135266 48135507 -102648046 - MSTA LTR MaLR 0 428 144 2148 82 58 14 chr11 48135507 48135801 -102647752 + AluY SINE Alu 1 307 -4 1753 138 128 53 chr11 48135801 48135957 -102647596 - MSTA LTR MaLR -284 144 1 2095 236 42 70 chr11 48135957 48136545 -102647008 - L1ME3A LINE L1 -265 5905 5336 2864 102 46 7 chr11 48136545 48136976 -102646577 - MER83 LTR ERV1 0 448 1 2095 236 42 70 chr11 48136976 48137546 -102646007 - L1ME3A LINE L1 -834 5336 4752 656 212 33 20 chr11 48137548 48137699 -102645854 - MIR SINE MIR -108 154 2 180 0 0 0 chr11 48138193 48138213 -102645340 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2197 114 3 7 chr11 48138263 48138562 -102644991 - AluSx SINE Alu -14 298 1 17794 74 8 4 chr11 48138702 48141550 -102642003 + L1P3 LINE L1 2839 5700 -454 250 264 102 3 chr11 48141801 48141930 -102641623 + MER5A DNA MER1_type 12 165 -24 510 250 162 0 chr11 48145230 48145378 -102638175 - MIR SINE MIR -22 240 69 2420 90 3 3 chr11 48145427 48145737 -102637816 + AluSp SINE Alu 1 310 -3 373 125 18 0 chr11 48145741 48145797 -102637756 + AluS SINE Alu 1 57 -244 353 293 40 0 chr11 48146028 48146127 -102637426 + MIR SINE MIR 47 149 -113 391 136 0 0 chr11 48147195 48147261 -102636292 - L1MC1 LINE L1 -493 5840 5775 180 353 67 34 chr11 48147352 48147471 -102636082 - MIR SINE MIR -64 144 22 235 246 140 53 chr11 48147638 48147752 -102635801 + MIR SINE MIR 17 140 -68 227 328 16 0 chr11 48148113 48148174 -102635379 - Charlie8 DNA MER1_type -2351 66 5 2383 62 0 49 chr11 48148248 48148555 -102634998 + AluY SINE Alu 1 292 -19 248 297 22 22 chr11 48149396 48149487 -102634066 - MIR SINE MIR -64 144 54 1483 208 4 0 chr11 48151942 48152207 -102631346 - AluJo SINE Alu -12 300 35 2417 95 0 0 chr11 48153838 48154134 -102629419 - AluSq SINE Alu -17 296 1 381 306 117 6 chr11 48154243 48154423 -102629130 + MIR SINE MIR 48 247 -15 198 241 60 48 chr11 48155760 48155843 -102627710 + MIR3 SINE MIR 90 173 -35 27 49 0 0 chr11 48156235 48156276 -102627277 + AT_rich Low_complexity Low_complexity 1 41 0 257 269 92 42 chr11 48156571 48156690 -102626863 - MIR SINE MIR -68 140 16 2196 103 7 0 chr11 48156819 48157129 -102626424 - AluSx SINE Alu 0 313 2 222 219 86 67 chr11 48157612 48157717 -102625836 - MIR3 SINE MIR -41 167 61 1611 188 36 0 chr11 48157992 48158269 -102625284 - AluJb SINE Alu -16 296 10 367 194 164 45 chr11 48158661 48158795 -102624758 - L2 LINE L2 0 3313 3164 21 36 0 0 chr11 48159301 48159329 -102624224 + GC_rich Low_complexity Low_complexity 1 28 0 210 313 0 0 chr11 48159744 48159808 -102623745 - MIR SINE MIR -129 133 70 292 239 0 19 chr11 48160107 48160194 -102623359 + MIR SINE MIR 82 163 -45 2296 102 7 0 chr11 48160202 48160495 -102623058 + AluSp SINE Alu 1 295 -18 482 304 23 59 chr11 48160700 48160865 -102622688 - L2 LINE L2 -3 3310 3153 2375 89 0 0 chr11 48160865 48161156 -102622397 + AluSg SINE Alu 1 291 -19 482 304 23 59 chr11 48161156 48161210 -102622343 - L2 LINE L2 -160 3153 3099 186 138 0 0 chr11 48161253 48161282 -102622271 - MER5A DNA MER1_type -153 36 8 275 235 328 0 chr11 48161282 48161401 -102622152 - MLT1L LTR MaLR -453 162 5 190 152 0 0 chr11 48162009 48162042 -102621511 + MIR SINE MIR 119 151 -111 183 305 85 0 chr11 48162296 48162378 -102621175 + MIR SINE MIR 65 153 -109 2349 101 13 7 chr11 48164843 48165151 -102618402 + AluSx SINE Alu 1 310 -2 * 2432 94 0 3 chr11 48165150 48165458 -102618095 + AluSg SINE Alu 1 307 -3 2031 137 7 7 chr11 48166377 48166676 -102616877 + AluJb SINE Alu 1 299 -13 1962 112 7 51 chr11 48167143 48167481 -102616072 + AluY SINE Alu 1 325 0 2054 141 23 0 chr11 48167487 48167791 -102615762 + AluJo SINE Alu 1 311 -1 1980 170 0 3 chr11 48168018 48168330 -102615223 - AluJb SINE Alu -1 311 1 1413 143 0 39 chr11 48168521 48168752 -102614801 + AluJo SINE Alu 87 308 -4 2233 97 3 29 chr11 48168767 48169078 -102614475 + AluSx SINE Alu 10 312 0 489 289 32 6 chr11 48169407 48169563 -102613990 - MIR SINE MIR -101 161 2 436 306 9 0 chr11 48169618 48169729 -102613824 - L2 LINE L2 -6 3266 3155 479 345 61 49 chr11 48170032 48170377 -102613176 - L2 LINE L2 -14 3258 2910 362 300 94 25 chr11 48170850 48171010 -102612543 + MIR SINE MIR 3 173 -89 201 147 0 0 chr11 48171127 48171161 -102612392 + (ATGGTG)n Simple_repeat Simple_repeat 5 38 0 205 239 0 0 chr11 48171605 48171651 -102611902 + (CGG)n Simple_repeat Simple_repeat 2 47 0 350 314 39 13 chr11 48172000 48172153 -102611400 - MIR SINE MIR -50 212 56 382 229 187 54 chr11 48173472 48173638 -102609915 - L2 LINE L2 -19 3294 3107 423 169 52 118 chr11 48173651 48173730 -102609823 - MER5B DNA MER1_type 0 178 110 2276 118 0 10 chr11 48173730 48174036 -102609517 - AluSq SINE Alu -10 303 1 423 169 52 118 chr11 48174036 48174092 -102609461 - MER5B DNA MER1_type -68 110 52 2034 147 6 13 chr11 48174106 48174420 -102609133 - AluJb SINE Alu 0 312 1 437 235 81 0 chr11 48175292 48175428 -102608125 - MIR3 SINE MIR -16 192 46 242 353 164 20 chr11 48175507 48175751 -102607802 - L2 LINE L2 -1 3271 2993 223 286 52 71 chr11 48175834 48175954 -102607599 - L2 LINE L2 -492 2822 2704 1392 104 85 0 chr11 48175954 48176166 -102607387 + MER30 DNA MER1_type 1 230 0 223 286 52 71 chr11 48176166 48176199 -102607354 - L2 LINE L2 -610 2704 2672 244 295 35 65 chr11 48176408 48176608 -102606945 - L2 LINE L2 -966 2348 2155 255 335 80 30 chr11 48177443 48177643 -102605910 - L1ME LINE L1 -299 5822 5613 325 328 49 57 chr11 48178320 48178564 -102604989 - L2 LINE L2 -446 2868 2627 195 235 0 0 chr11 48179445 48179496 -102604057 + CT-rich Low_complexity Low_complexity 1 51 0 323 174 51 62 chr11 48179795 48179901 -102603652 + MIR SINE MIR 98 202 -36 192 280 0 80 chr11 48180644 48180719 -102602834 - L2 LINE L2 -3 3269 3201 2208 132 0 0 chr11 48181002 48181298 -102602255 + AluSx SINE Alu 1 296 -16 252 0 0 0 chr11 48181298 48181326 -102602227 + (TA)n Simple_repeat Simple_repeat 2 29 0 187 304 81 34 chr11 48181651 48181799 -102601754 - L3 LINE CR1 -22 1555 1401 265 265 84 0 chr11 48183168 48183251 -102600302 - MIR SINE MIR -15 247 158 197 260 0 20 chr11 48183301 48183351 -102600202 + MIR SINE MIR 97 145 -117 965 99 0 0 chr11 48183356 48183477 -102600076 + AluSq/x SINE Alu 1 121 -192 513 163 0 0 chr11 48183615 48183701 -102599852 + AluSg/x SINE Alu 216 301 -11 322 240 136 13 chr11 48184069 48184223 -102599330 + MLT1L LTR MaLR 220 392 -223 345 265 10 29 chr11 48185334 48185436 -102598117 + MIR SINE MIR 29 128 -134 * 570 253 47 18 chr11 48185423 48185617 -102597936 + MIR SINE MIR 58 260 -2 771 288 89 17 chr11 48185879 48186181 -102597372 - MER102b DNA MER1_type -16 325 2 206 224 0 35 chr11 48186536 48186594 -102596959 + (TAA)n Simple_repeat Simple_repeat 1 56 0 571 100 12 2 chr11 48186594 48186850 -102596703 + AluSq SINE Alu 1 312 -1 622 270 58 0 chr11 48187318 48187492 -102596061 - MER58A DNA MER1_type 0 224 41 849 152 7 0 chr11 48187492 48187637 -102595916 + L1MB7 LINE L1 5847 5992 -186 737 127 35 7 chr11 48187639 48187781 -102595772 + L1MB7 LINE L1 6039 6184 0 1829 189 92 22 chr11 48187786 48188196 -102595357 + L1MB5 LINE L1 5687 6134 -40 1766 131 6 119 chr11 48188196 48188539 -102595014 + AluJo SINE Alu 1 304 -8 1829 189 92 22 chr11 48188539 48188584 -102594969 + L1MB5 LINE L1 6134 6174 0 212 176 78 0 chr11 48188961 48189012 -102594541 + L2 LINE L2 3206 3260 -12 250 215 47 65 chr11 48189069 48189088 -102594465 + L1ME4a LINE L1 6017 6035 -86 2222 109 3 20 chr11 48189088 48189414 -102594139 - AluSp SINE Alu 0 313 1 250 215 47 65 chr11 48189414 48189501 -102594052 + L1ME4a LINE L1 6035 6121 0 753 166 211 0 chr11 48189768 48189943 -102593610 + MER20 DNA MER1_type 3 214 -5 848 244 31 18 chr11 48189982 48190211 -102593342 - MIR SINE MIR -5 257 26 942 201 11 11 chr11 48190372 48190589 -102592964 - AluJo SINE Alu 0 312 122 1858 145 168 17 chr11 48190709 48191060 -102592493 - MER4A LTR ERV1 0 664 261 365 79 289 0 chr11 48191060 48191136 -102592417 - MER4A LTR ERV1 -566 98 1 325 233 181 98 chr11 48191695 48191765 -102591788 - L1ME3A LINE L1 0 6170 6107 2463 72 0 26 chr11 48191765 48192072 -102591481 + AluSg SINE Alu 1 299 -11 325 233 181 98 chr11 48192072 48192134 -102591419 - L1ME3A LINE L1 -63 6107 6027 33 25 0 0 chr11 48193021 48193061 -102590492 + AT_rich Low_complexity Low_complexity 1 40 0 474 258 147 31 chr11 48194167 48194330 -102589223 - MER5A DNA MER1_type -1 188 7 1060 196 42 21 chr11 48194444 48194684 -102588869 + MIR SINE MIR 15 259 -3 2194 112 3 20 chr11 48195797 48196102 -102587451 + AluSx SINE Alu 8 307 -5 546 244 38 26 chr11 48196102 48196300 -102587253 + MIR SINE MIR 15 210 -52 23 33 0 0 chr11 48196423 48196453 -102587100 + AT_rich Low_complexity Low_complexity 1 30 0 199 240 198 31 chr11 48196876 48196972 -102586581 - MIR SINE MIR -70 192 81 737 308 24 0 chr11 48196987 48197198 -102586355 - MIR SINE MIR -3 259 44 2593 54 0 0 chr11 48197904 48198201 -102585352 + AluY SINE Alu 2 298 -13 503 278 217 0 chr11 48198567 48198779 -102584774 - MIR SINE MIR 0 262 5 389 368 58 12 chr11 48198881 48199123 -102584430 - L2 LINE L2 0 3272 3020 261 294 39 0 chr11 48199120 48199222 -102584331 + MIR SINE MIR 147 252 -10 * 1776 161 45 3 chr11 48200680 48200966 -102582587 + AluJo SINE Alu 1 298 -14 258 32 0 0 chr11 48201159 48201190 -102582363 + (CTG)n Simple_repeat Simple_repeat 3 33 0 180 0 0 0 chr11 48201775 48201795 -102581758 + (A)n Simple_repeat Simple_repeat 1 20 0 295 308 19 0 chr11 48201968 48202072 -102581481 + MIR SINE MIR 41 146 -62 498 238 81 0 chr11 48202477 48202637 -102580916 - L1ME4a LINE L1 -6 6115 5943 2237 112 0 0 chr11 48202823 48203119 -102580434 - AluSx SINE Alu -5 307 12 628 240 31 66 chr11 48203693 48203889 -102579664 - MIR SINE MIR 0 262 74 484 165 36 4 chr11 48203892 48203988 -102579565 - Tigger4(Zombi) DNA MER2_type 0 2731 2635 871 311 3 31 chr11 48204988 48205281 -102578272 - MLT1K LTR MaLR -266 322 38 528 256 60 18 chr11 48205282 48205450 -102578103 + L1MC5 LINE L1 7064 7238 -723 569 237 22 0 chr11 48205475 48205610 -102577943 + L1MC5 LINE L1 7289 7426 -535 1260 137 0 0 chr11 48205732 48205907 -102577646 - AluSq SINE Alu -136 177 3 332 309 73 69 chr11 48206055 48206301 -102577252 + L1ME3A LINE L1 5923 6169 -1 228 293 23 30 chr11 48206376 48206509 -102577044 - L2 LINE L2 -227 3045 2914 389 114 186 0 chr11 48206532 48206602 -102576951 + AluSc SINE Alu 205 287 -12 1031 321 152 7 chr11 48206730 48207435 -102576118 - L2 LINE L2 -619 2695 1889 1012 102 0 0 chr11 48207453 48207580 -102575973 + AluSq SINE Alu 61 187 -126 1143 138 0 42 chr11 48207644 48207833 -102575720 + AluSp SINE Alu 131 311 -2 219 320 13 0 chr11 48208344 48208422 -102575131 + MIR SINE MIR 63 141 -121 1570 164 107 11 chr11 48209188 48209468 -102574085 - AluJo SINE Alu -5 307 1 1830 168 27 7 chr11 48209480 48209777 -102573776 - AluJb SINE Alu -9 303 1 636 312 96 28 chr11 48211857 48212422 -102571131 - L2 LINE L2 -85 3228 2623 753 113 61 0 chr11 48213192 48213307 -102570246 + MER57-int LTR ERV1 2184 2305 -5232 802 134 0 39 chr11 48213308 48213459 -102570094 + FLAM_C SINE Alu 1 146 0 1680 91 8 4 chr11 48214454 48214697 -102568856 - MLT1B LTR MaLR -139 251 8 207 273 15 0 chr11 48215610 48215676 -102567877 + (TG)n Simple_repeat Simple_repeat 2 68 0 293 68 23 0 chr11 48216852 48216896 -102566657 + (TG)n Simple_repeat Simple_repeat 1 45 0 387 314 77 6 chr11 48219702 48219871 -102563682 - MIR SINE MIR -62 200 20 44 70 0 0 chr11 48220146 48220232 -102563321 + GC_rich Low_complexity Low_complexity 1 86 0 326 248 146 36 chr11 48221756 48221893 -102561660 + MIR SINE MIR 13 164 -98 257 373 35 7 chr11 48221998 48222143 -102561410 - MIR SINE MIR -58 150 45 326 317 134 6 chr11 48222546 48222710 -102560843 + MIR SINE MIR 28 212 -50 514 310 81 0 chr11 48222881 48223055 -102560498 - MIR SINE MIR -8 254 67 2156 100 0 40 chr11 48223265 48223586 -102559967 - AluSx SINE Alu -2 310 3 2104 130 46 3 chr11 48223604 48223950 -102559603 - MER46B DNA MER2_type 0 236 1 210 298 105 0 chr11 48226026 48226127 -102557426 - MIR SINE MIR -62 146 54 26 74 0 0 chr11 48226662 48226716 -102556837 + GC_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr11 48226765 48226786 -102556767 + GC_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr11 48226881 48226915 -102556638 + GC_rich Low_complexity Low_complexity 1 34 0 226 325 58 0 chr11 48230387 48230507 -102553046 + L2 LINE L2 3144 3270 -2 445 238 150 12 chr11 48234801 48234961 -102548592 + MIR SINE MIR 11 192 -70 291 331 136 12 chr11 48236182 48236351 -102547202 - L3 LINE CR1 -106 1471 1282 218 217 0 0 chr11 48240749 48240795 -102542758 + A-rich Low_complexity Low_complexity 1 46 0 207 0 0 0 chr11 48243533 48243556 -102539997 + (A)n Simple_repeat Simple_repeat 1 23 0 1591 199 3 6 chr11 48243789 48244100 -102539453 + AluJb SINE Alu 3 312 0 2238 110 0 0 chr11 48245262 48245572 -102537981 - AluSq SINE Alu -3 310 1 1673 137 90 34 chr11 48246303 48246624 -102536929 - MER44D DNA MER2_type 0 609 1 2368 64 3 0 chr11 48246626 48246923 -102536630 - AluY SINE Alu -13 298 1 216 0 0 0 chr11 48247563 48247587 -102535966 + (A)n Simple_repeat Simple_repeat 1 24 0 2297 91 0 7 chr11 48247976 48248284 -102535269 - AluSg SINE Alu -3 307 2 27 0 0 0 chr11 48248722 48248749 -102534804 + AT_rich Low_complexity Low_complexity 1 27 0 475 164 48 10 chr11 48248791 48248895 -102534658 - Charlie1 DNA MER1_type -15 2746 2639 1350 139 0 5 chr11 48248900 48249108 -102534445 - AluJb SINE Alu -22 290 84 1092 199 66 0 chr11 48249161 48249387 -102534166 - Charlie1 DNA MER1_type -2520 241 1 678 250 165 0 chr11 48250675 48250899 -102532654 + L2 LINE L2 2340 2600 -714 1422 150 0 0 chr11 48250903 48251123 -102532430 - AluJb SINE Alu 0 312 93 897 118 0 15 chr11 48251138 48251273 -102532280 - FLAM_C SINE Alu 0 133 1 468 221 0 47 chr11 48251273 48251400 -102532153 + L2 LINE L2 2592 2712 -602 2337 241 67 24 chr11 48251402 48252236 -102531317 + L1MC4 LINE L1 7171 8040 -2 1026 235 159 5 chr11 48252243 48252559 -102530994 + L2 LINE L2 2714 2980 -333 2054 105 14 3 chr11 48252559 48252855 -102530698 - AluSx SINE Alu -13 299 1 1026 235 159 5 chr11 48252855 48253034 -102530519 + L2 LINE L2 2980 3309 -4 2148 91 27 0 chr11 48254171 48254467 -102529086 - AluY SINE Alu -7 304 1 234 0 0 0 chr11 48255568 48255594 -102527959 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1396 70 10 30 chr11 48258210 48258411 -102525142 + MER30 DNA MER1_type 1 197 -33 2204 98 7 0 chr11 48259600 48259897 -102523656 - AluSx SINE Alu -13 299 1 1163 162 0 10 chr11 48260055 48260252 -102523301 - AluJb SINE Alu -33 279 85 2319 108 0 0 chr11 48261783 48262089 -102521464 - AluSq SINE Alu -7 306 1 207 371 35 52 chr11 48262893 48263009 -102520544 + L2 LINE L2 3139 3252 -20 234 0 0 0 chr11 48263076 48263102 -102520451 + (CA)n Simple_repeat Simple_repeat 2 27 0 951 218 82 4 chr11 48263536 48263779 -102519774 + MLT1F1 LTR MaLR 188 449 -118 4827 209 60 38 chr11 48263781 48264262 -102519291 + L1MB5 LINE L1 1550 2019 -4363 444 162 40 0 chr11 48264262 48264361 -102519192 - L1PA16 LINE L1 -1 6165 6063 4827 209 60 38 chr11 48264361 48266090 -102517463 + L1MB5 LINE L1 2019 3709 -2673 917 125 128 208 chr11 48266090 48266417 -102517136 + AluJo SINE Alu 1 301 -1 1813 192 3 6 chr11 48266427 48266740 -102516813 + AluJb SINE Alu 1 312 0 4827 209 60 38 chr11 48266740 48267001 -102516552 + L1MB5 LINE L1 3717 4177 -2205 796 124 0 7 chr11 48266999 48267136 -102516417 + L1MA9 LINE L1 6147 6282 -30 * 1516 208 62 5 chr11 48267138 48267522 -102516031 + L1MB5 LINE L1 4164 4569 -1813 * 4209 166 44 17 chr11 48267520 48268499 -102515054 + L1MB5 LINE L1 5409 6410 0 304 322 169 18 chr11 48268637 48268910 -102514643 + Charlie8 DNA MER1_type 81 394 -2023 241 279 135 27 chr11 48269904 48270015 -102513538 + L2 LINE L2 3189 3311 -2 2244 96 0 7 chr11 48270402 48270703 -102512850 + AluY SINE Alu 1 299 -12 29 0 0 0 chr11 48270760 48270789 -102512764 + AT_rich Low_complexity Low_complexity 1 29 0 310 299 88 59 chr11 48270809 48270930 -102512623 + L1ME4a LINE L1 5842 5973 -148 2411 109 0 0 chr11 48270930 48271243 -102512310 + AluSq SINE Alu 1 313 0 310 299 88 59 chr11 48271243 48271325 -102512228 + L1ME4a LINE L1 5973 6051 -70 2206 88 7 3 chr11 48271709 48272029 -102511524 + AluSp SINE Alu 1 321 0 517 285 198 34 chr11 48273748 48274253 -102509300 + L2 LINE L2 1996 2583 -731 393 278 67 0 chr11 48274293 48274383 -102509170 + MIR SINE MIR 17 112 -150 2129 123 3 0 chr11 48274401 48274709 -102508844 - AluSc SINE Alu 0 309 1 1351 194 8 16 chr11 48274831 48275078 -102508475 + AluSx SINE Alu 55 299 -13 540 248 62 19 chr11 48275498 48275708 -102507845 + MER112 DNA MER1_type 33 251 -9 453 231 97 30 chr11 48275717 48275851 -102507702 + MIR SINE MIR 118 260 -2 703 307 37 73 chr11 48275853 48276301 -102507252 + L2 LINE L2 2611 3047 -225 2194 109 0 10 chr11 48276340 48276651 -102506902 + AluSx SINE Alu 1 308 -4 183 80 0 0 chr11 48279574 48279599 -102503954 + (T)n Simple_repeat Simple_repeat 1 25 0 814 149 5 122 chr11 48280131 48280189 -102503364 - MER3 DNA MER1_type -1 208 145 2297 108 0 13 chr11 48280189 48280325 -102503228 + AluSq SINE Alu 1 137 -176 2279 88 7 0 chr11 48280325 48280622 -102502931 + AluSx SINE Alu 1 299 -13 2297 108 0 13 chr11 48280622 48280801 -102502752 + AluSq SINE Alu 137 312 -1 814 149 5 122 chr11 48280801 48280964 -102502589 - MER3 DNA MER1_type -64 145 13 324 0 0 0 chr11 48282112 48282148 -102501405 + (TTA)n Simple_repeat Simple_repeat 2 37 0 1888 146 10 7 chr11 48282152 48282446 -102501107 - AluJo SINE Alu -17 295 1 21 0 0 0 chr11 48282644 48282665 -102500888 + AT_rich Low_complexity Low_complexity 1 21 0 1940 170 0 0 chr11 48282725 48283095 -102500458 + AluJb SINE Alu 1 370 0 377 353 175 26 chr11 48283770 48284152 -102499401 + L2 LINE L2 2833 3271 -1 1809 155 28 0 chr11 48284254 48284544 -102499009 + AluJb SINE Alu 2 299 -13 2103 133 10 0 chr11 48284830 48285130 -102498423 - AluSx SINE Alu -9 303 1 237 132 0 0 chr11 48285512 48285550 -102498003 + (T)n Simple_repeat Simple_repeat 1 38 0 709 270 26 74 chr11 48285562 48285713 -102497840 + MIR SINE MIR 2 159 -103 2300 87 0 3 chr11 48285713 48286001 -102497552 + AluSg SINE Alu 1 287 -23 186 71 0 0 chr11 48286005 48286033 -102497520 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 709 270 26 74 chr11 48286033 48286146 -102497407 + MIR SINE MIR 162 258 -4 2284 100 3 7 chr11 48286712 48287012 -102496541 - AluSq SINE Alu -14 299 1 224 259 12 12 chr11 48287478 48287559 -102495994 + (CTG)n Simple_repeat Simple_repeat 2 82 0 783 281 31 9 chr11 48287960 48288188 -102495365 + MIR SINE MIR 2 234 -28 183 74 0 0 chr11 48288190 48288208 -102495345 + (TTA)n Simple_repeat Simple_repeat 2 22 -6 925 191 0 25 chr11 48288208 48288370 -102495183 - FAM SINE Alu -17 158 1 183 74 0 0 chr11 48288370 48288378 -102495175 + (TTA)n Simple_repeat Simple_repeat 21 28 0 261 271 82 24 chr11 48288718 48288803 -102494750 + L2 LINE L2 3186 3275 -38 1230 122 0 39 chr11 48288916 48289097 -102494456 + AluSg/x SINE Alu 136 309 -3 2027 159 0 6 chr11 48289620 48289934 -102493619 - AluJb SINE Alu 0 312 1 25 0 0 0 chr11 48289940 48289965 -102493588 + AT_rich Low_complexity Low_complexity 1 25 0 204 316 0 25 chr11 48291822 48291901 -102491652 + GA-rich Low_complexity Low_complexity 3 79 0 243 178 0 0 chr11 48343318 48343363 -102440190 + MLT1F LTR MaLR 67 111 -456 913 122 8 0 chr11 48343382 48343513 -102440040 + FLAM_C SINE Alu 1 132 -11 1823 140 7 14 chr11 48343522 48343829 -102439724 + AluJb SINE Alu 5 309 0 289 242 11 33 chr11 48343849 48343940 -102439613 + MLT1F LTR MaLR 109 197 -370 534 208 307 20 chr11 48343967 48344241 -102439312 + MLT1F LTR MaLR 177 528 -14 230 333 0 0 chr11 48344246 48344318 -102439235 + MIR SINE MIR 43 114 -94 1085 131 0 0 chr11 48344322 48344475 -102439078 - AluSg/x SINE Alu -19 291 139 1360 145 4 28 chr11 48344575 48344823 -102438730 + THE1C LTR MaLR 134 375 0 1895 187 30 42 chr11 48344823 48345673 -102437880 + L1MCa LINE L1 2077 2909 -3517 681 156 284 0 chr11 48345684 48345825 -102437728 - Tigger3(Golem) DNA MER2_type -1 3028 2848 541 13 77 0 chr11 48345933 48346011 -102437542 + CT-rich Low_complexity Low_complexity 1 84 0 31 26 0 0 chr11 48346729 48346767 -102436786 + AT_rich Low_complexity Low_complexity 1 38 0 597 164 9 0 chr11 48347177 48347287 -102436266 - L1MC/D LINE L1 -565 5768 5658 2298 110 3 0 chr11 48347314 48347622 -102435931 - AluSx SINE Alu -3 309 1 355 202 153 8 chr11 48347622 48347818 -102435735 - L1P5 LINE L1 -636 5520 5296 315 313 109 16 chr11 48347894 48348086 -102435467 - L1M4 LINE L1 -944 5202 4993 2492 74 0 0 chr11 48348306 48348615 -102434938 + AluSc SINE Alu 1 309 0 1528 80 45 0 chr11 48348729 48348928 -102434625 - AluSp SINE Alu -103 210 3 1133 264 146 11 chr11 48348936 48349409 -102434144 + L2 LINE L2 2202 2738 -576 914 213 0 0 chr11 48349498 48349658 -102433895 + FRAM SINE Alu 1 160 -6 879 170 49 5 chr11 48349796 48350020 -102433533 - Charlie5 DNA MER1_type -27 2585 2352 662 156 206 0 chr11 48350631 48350791 -102432762 + MER105 DNA DNA 11 203 -1 2364 91 7 0 chr11 48351755 48352051 -102431502 - AluSc SINE Alu -11 298 1 21 57 0 0 chr11 48352111 48352146 -102431407 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr11 48353047 48353074 -102430479 + AT_rich Low_complexity Low_complexity 1 27 0 349 250 23 11 chr11 48353127 48353215 -102430338 + MIR SINE MIR 164 252 -10 1973 118 0 24 chr11 48354097 48354413 -102429140 - AluSx SINE Alu 0 309 1 2513 53 7 0 chr11 48354517 48354817 -102428736 - AluSp SINE Alu -11 302 1 250 287 52 35 chr11 48354835 48354950 -102428603 + MIR SINE MIR 35 151 -111 315 250 42 17 chr11 48354977 48355097 -102428456 + MER104 DNA Tc2 58 180 0 210 274 32 97 chr11 48355170 48355294 -102428259 + MIR SINE MIR 20 135 -127 305 256 73 0 chr11 48355328 48355410 -102428143 - L2 LINE L2 0 3272 3185 210 245 57 0 chr11 48355484 48355537 -102428016 + L3 LINE CR1 1519 1574 -3 782 294 41 4 chr11 48355583 48355828 -102427725 + MIR SINE MIR 4 257 -5 279 256 33 22 chr11 48355829 48355919 -102427634 + CT-rich Low_complexity Low_complexity 1 91 0 637 182 8 0 chr11 48356801 48356922 -102426631 - AluJb SINE Alu -181 131 10 345 115 0 0 chr11 48356922 48356974 -102426579 - Charlie5 DNA MER1_type -2549 63 12 1937 121 33 0 chr11 48357188 48357488 -102426065 - AluSx SINE Alu 0 309 1 321 280 90 44 chr11 48357551 48357962 -102425591 + L1M4 LINE L1 4378 4807 -1339 2254 88 44 0 chr11 48358212 48358508 -102425045 + AluSc SINE Alu 1 309 0 2359 105 0 0 chr11 48359304 48359608 -102423945 - AluSx SINE Alu -8 304 1 776 224 171 0 chr11 48359834 48360044 -102423509 - MLT1E1 LTR MaLR 0 654 409 499 175 35 9 chr11 48360098 48360212 -102423341 - MLT1E1 LTR MaLR -473 181 65 192 48 71 24 chr11 48360284 48360326 -102423227 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 5606 116 17 3 chr11 48360331 48360989 -102422564 - L1PA16 LINE L1 -9 6157 5481 2565 58 0 10 chr11 48360989 48361298 -102422255 - AluY SINE Alu -5 306 1 5606 116 17 3 chr11 48361298 48361572 -102421981 - L1PA16 LINE L1 -685 5481 5212 33 43 0 0 chr11 48361779 48361826 -102421727 + AT_rich Low_complexity Low_complexity 1 47 0 1059 211 18 14 chr11 48362539 48362762 -102420791 - MER58A DNA MER1_type 0 224 1 1609 178 22 4 chr11 48363528 48363804 -102419749 + AluJo SINE Alu 1 281 -31 1949 140 7 0 chr11 48364038 48364323 -102419230 + AluJo SINE Alu 5 291 -21 392 268 96 13 chr11 48367663 48367820 -102415733 + MIR SINE MIR 23 192 -70 477 285 104 28 chr11 48368067 48368355 -102415198 - L1MC4a LINE L1 -1763 6045 5736 1448 190 8 4 chr11 48368357 48368610 -102414943 - MLT1D LTR MaLR -2 503 250 387 263 42 11 chr11 48369002 48369097 -102414456 + L2 LINE L2 3212 3309 -4 555 287 24 59 chr11 48369721 48369997 -102413556 + L1ME4a LINE L1 5654 5938 -183 1685 180 23 10 chr11 48369997 48370297 -102413256 - AluJo SINE Alu -8 304 1 555 287 24 59 chr11 48370297 48370309 -102413244 + L1ME4a LINE L1 5938 5949 -172 2038 97 3 55 chr11 48370309 48370618 -102412935 - AluSx SINE Alu -19 293 1 555 287 24 59 chr11 48370618 48370669 -102412884 + L1ME4a LINE L1 5949 5982 -139 747 173 0 0 chr11 48370759 48370869 -102412684 - FLAM_C SINE Alu -29 114 5 36 40 0 0 chr11 48371018 48371068 -102412485 + AT_rich Low_complexity Low_complexity 1 50 0 550 267 44 6 chr11 48371285 48371465 -102412088 + MIR3 SINE MIR 13 199 -9 897 156 0 19 chr11 48371977 48372108 -102411445 + FRAM SINE Alu 6 135 -177 2668 156 57 30 chr11 48372108 48372212 -102411341 - MER66B LTR ERV1 0 486 386 2227 107 13 3 chr11 48372212 48372512 -102411041 - AluSq SINE Alu -10 303 1 2668 156 57 30 chr11 48372512 48372880 -102410673 - MER66B LTR ERV1 -100 386 1 897 156 0 19 chr11 48372880 48372908 -102410645 + FRAM SINE Alu 135 162 -14 295 176 81 186 chr11 48372912 48372997 -102410556 + HAL1 LINE L1 764 856 -1651 315 127 0 0 chr11 48372997 48373052 -102410501 - L1MA7 LINE L1 -6 6285 6231 295 176 81 186 chr11 48373052 48373176 -102410377 + HAL1 LINE L1 856 951 -1556 268 300 130 0 chr11 48373219 48373319 -102410234 + L2 LINE L2 3004 3116 -197 1636 198 27 24 chr11 48373319 48373728 -102409825 + HAL1 LINE L1 1239 1648 -859 259 143 0 0 chr11 48373728 48373770 -102409783 - U2 snRNA snRNA -146 42 1 1793 143 0 18 chr11 48373887 48374167 -102409386 - AluJo SINE Alu -26 286 12 939 116 17 47 chr11 48374213 48374385 -102409168 + Charlie5 DNA MER1_type 2234 2400 -212 2204 121 0 7 chr11 48375713 48376010 -102407543 + AluSx SINE Alu 1 295 -17 2464 82 0 9 chr11 48376033 48376349 -102407204 + AluSq SINE Alu 1 313 0 260 244 13 13 chr11 48377084 48377162 -102406391 + MER113 DNA MER1_type? 9 86 -435 405 0 0 0 chr11 48377295 48377340 -102406213 + (CA)n Simple_repeat Simple_repeat 2 46 0 2030 103 38 10 chr11 48377354 48377644 -102405909 + AluSq SINE Alu 1 298 -15 1232 256 148 28 chr11 48377745 48378285 -102405268 - HAL1 LINE L1 -1096 1411 807 1210 203 90 32 chr11 48378281 48378686 -102404867 + L1ME1 LINE L1 5502 6161 -5 * 919 201 75 47 chr11 48378961 48379175 -102404378 - MER58A DNA MER1_type -4 220 1 26 0 0 0 chr11 48380376 48380402 -102403151 + AT_rich Low_complexity Low_complexity 1 26 0 233 239 37 92 chr11 48380668 48380777 -102402776 + MLT1L LTR MaLR 4 106 -509 2460 77 7 3 chr11 48381842 48382152 -102401401 + AluSp SINE Alu 1 311 -2 277 275 55 11 chr11 48382352 48382443 -102401110 + MIR SINE MIR 48 142 -66 537 271 0 8 chr11 48382609 48382731 -102400822 - MIR SINE MIR -121 141 21 1767 112 4 8 chr11 48382976 48383217 -102400336 + AluSq SINE Alu 4 243 -70 669 34 82 0 chr11 48383220 48383366 -102400187 + (TA)n Simple_repeat Simple_repeat 1 158 0 228 292 0 11 chr11 48385999 48386088 -102397465 + Charlie7 DNA MER1_type 2443 2530 -82 23 0 0 0 chr11 48386543 48386566 -102396987 + AT_rich Low_complexity Low_complexity 1 23 0 182 91 30 0 chr11 48387433 48387466 -102396087 + (TA)n Simple_repeat Simple_repeat 1 34 0 289 320 10 30 chr11 48387728 48387828 -102395725 - L2 LINE L2 -9 3304 3207 631 216 128 70 chr11 48387993 48388220 -102395333 + MIR SINE MIR 3 242 -20 31 88 0 0 chr11 48388334 48388414 -102395139 + AT_rich Low_complexity Low_complexity 1 80 0 2065 128 7 3 chr11 48388565 48388863 -102394690 + AluSx SINE Alu 1 299 -13 27 29 0 0 chr11 48388914 48388948 -102394605 + AT_rich Low_complexity Low_complexity 1 34 0 405 280 61 8 chr11 48389044 48389199 -102394354 - MIR SINE MIR -62 146 39 207 197 33 16 chr11 48391250 48391311 -102392242 + MIR SINE MIR 156 217 -45 23 0 0 0 chr11 48391434 48391457 -102392096 + AT_rich Low_complexity Low_complexity 1 23 0 291 247 52 0 chr11 48391548 48391625 -102391928 - MIR SINE MIR -98 164 84 305 307 67 10 chr11 48391709 48391829 -102391724 + MIR SINE MIR 21 146 -62 3148 148 31 96 chr11 48392013 48392531 -102391022 - L1MB8 LINE L1 0 6178 5715 2360 86 0 0 chr11 48392531 48392823 -102390730 + AluSx SINE Alu 1 292 -20 3148 148 31 96 chr11 48392823 48393002 -102390551 - L1MB8 LINE L1 -463 5715 5526 492 147 0 0 chr11 48393157 48393232 -102390321 + AluJ/FRAM SINE Alu 221 295 -17 2231 106 0 13 chr11 48393466 48393768 -102389785 + AluSx SINE Alu 1 298 -14 547 241 103 17 chr11 48393843 48394017 -102389536 + MIR SINE MIR 57 245 -17 339 239 158 58 chr11 48394290 48394602 -102388951 + L1P LINE L1 3373 3693 -2453 349 279 48 92 chr11 48394617 48394933 -102388620 + L1ME4a LINE L1 4046 4347 -1799 2332 89 0 13 chr11 48395010 48395314 -102388239 + AluSx SINE Alu 1 300 -12 925 63 0 0 chr11 48395345 48395456 -102388097 + FRAM SINE Alu 51 161 -15 357 268 55 49 chr11 48395501 48395684 -102387869 + L1ME4a LINE L1 4498 4681 -1465 1488 218 26 79 chr11 48395758 48396225 -102387328 + L1ME4a LINE L1 5088 5578 -543 2089 147 0 0 chr11 48396225 48396525 -102387028 + AluSx SINE Alu 5 304 -8 1476 149 109 18 chr11 48396532 48396808 -102386745 + AluJo SINE Alu 5 305 -7 1488 218 26 79 chr11 48396808 48396880 -102386673 + L1ME4a LINE L1 5584 5658 -463 2197 125 0 3 chr11 48396880 48397184 -102386369 + AluSx SINE Alu 6 308 -4 1488 218 26 79 chr11 48397184 48397556 -102385997 + L1ME4a LINE L1 5658 5942 -179 1668 11 0 0 chr11 48397556 48397739 -102385814 - AluY SINE Alu -10 301 119 1488 218 26 79 chr11 48397739 48397911 -102385642 + L1ME4a LINE L1 5942 6121 0 988 206 143 24 chr11 48397929 48398307 -102385246 - L1ME4a LINE L1 0 6121 5699 2108 133 13 7 chr11 48398376 48398729 -102384824 - AluSx SINE Alu 0 355 1 1063 93 0 0 chr11 48398731 48398860 -102384693 - AluJo/FLAM SINE Alu -173 129 1 282 260 52 59 chr11 48398881 48399116 -102384437 - L2 LINE L2 -52 3220 2935 375 281 183 24 chr11 48399159 48399323 -102384230 - MIR SINE MIR -53 209 20 2348 80 0 0 chr11 48399603 48399904 -102383649 - AluY SINE Alu -10 301 1 785 227 134 5 chr11 48400197 48400391 -102383162 - MIR SINE MIR -3 259 41 2438 70 0 10 chr11 48400505 48400807 -102382746 - AluY SINE Alu -12 299 1 25 31 0 0 chr11 48402625 48402657 -102380896 + AT_rich Low_complexity Low_complexity 1 32 0 243 250 102 80 chr11 48402811 48402899 -102380654 - L2 LINE L2 -15 3257 3168 2461 74 0 3 chr11 48402964 48403263 -102380290 - AluY SINE Alu -13 298 1 2515 58 0 3 chr11 48404407 48404702 -102378851 - AluY SINE Alu -17 294 1 233 217 0 96 chr11 48405593 48405676 -102377877 + L1ME4a LINE L1 5974 6048 -73 483 155 0 0 chr11 48405778 48405862 -102377691 + GA-rich Low_complexity Low_complexity 3 86 0 2293 99 3 0 chr11 48406981 48407275 -102376278 - AluSx SINE Alu -17 295 1 2244 98 3 3 chr11 48407809 48408114 -102375439 + AluSg SINE Alu 1 305 -5 503 256 8 26 chr11 48408237 48408354 -102375199 - L2 LINE L2 0 3272 3158 561 164 58 0 chr11 48409470 48409574 -102373979 - MER103 DNA DNA -47 119 10 240 322 0 23 chr11 48409792 48409879 -102373674 - MIR3 SINE MIR -54 154 70 2076 105 3 7 chr11 48409889 48410174 -102373379 - AluSx SINE Alu -5 307 24 959 128 116 6 chr11 48411134 48411298 -102372255 - MER20 DNA MER1_type 0 219 38 223 214 71 0 chr11 48411805 48411861 -102371692 + MIR SINE MIR 102 161 -101 2329 89 0 3 chr11 48411874 48412176 -102371377 - AluSq SINE Alu -12 301 1 369 287 26 0 chr11 48412271 48412386 -102371167 + MIR SINE MIR 86 203 -59 407 189 22 11 chr11 48412897 48412987 -102370566 - L1ME3A LINE L1 -5 6165 6075 543 210 170 40 chr11 48413174 48413374 -102370179 + MIR SINE MIR 34 259 -3 402 243 36 18 chr11 48414370 48414481 -102369072 - MER117 DNA MER1_type -84 113 1 2238 117 0 3 chr11 48414970 48415278 -102368275 + AluSx SINE Alu 1 307 -5 560 259 89 38 chr11 48416829 48417235 -102366318 + MLT1K LTR MaLR 139 588 0 449 250 26 26 chr11 48419242 48419358 -102364195 - MER5B DNA MER1_type -59 119 4 389 267 86 0 chr11 48419471 48419587 -102363966 + L2 LINE L2 3188 3313 0 21 0 0 0 chr11 48421677 48421698 -102361855 + AT_rich Low_complexity Low_complexity 1 21 0 239 307 61 53 chr11 48421954 48421977 -102361576 - L3 LINE CR1 -12 1565 1544 951 70 86 0 chr11 48421977 48422105 -102361448 + MER85 DNA T2_type 1 139 0 239 307 61 53 chr11 48422105 48422195 -102361358 - L3 LINE CR1 -33 1544 1451 1033 73 15 0 chr11 48422297 48422433 -102361120 + MER103 DNA DNA 3 140 -26 617 148 39 47 chr11 48422433 48422561 -102360992 - L3 LINE CR1 -117 1460 1334 21 0 0 0 chr11 48423237 48423258 -102360295 + AT_rich Low_complexity Low_complexity 1 21 0 27 73 0 0 chr11 48423522 48423577 -102359976 + AT_rich Low_complexity Low_complexity 1 55 0 269 279 79 57 chr11 48424231 48424371 -102359182 - MIR SINE MIR -50 212 70 276 30 0 0 chr11 48424491 48424524 -102359029 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1929 143 3 7 chr11 48424872 48425165 -102358388 + AluJb SINE Alu 1 292 -20 344 121 17 0 chr11 48425189 48425247 -102358306 + AluJo SINE Alu 78 136 -166 1564 122 4 0 chr11 48425839 48426069 -102357484 + AluSg/x SINE Alu 79 309 -3 781 264 112 48 chr11 48426071 48426571 -102356982 + HAL1 LINE L1 1878 2409 -98 1340 94 0 0 chr11 48426613 48426784 -102356769 - L1PA11 LINE L1 0 6174 6004 793 161 8 15 chr11 48426815 48426945 -102356608 - FLAM_C SINE Alu -3 130 2 2028 148 0 0 chr11 48426952 48427257 -102356296 - AluJo SINE Alu -7 305 1 220 347 10 31 chr11 48427504 48427602 -102355951 + MIR3 SINE MIR 9 104 -104 186 229 115 33 chr11 48427729 48427790 -102355763 - L2 LINE L2 0 3272 3207 184 241 35 52 chr11 48428062 48428120 -102355433 - MIR3 SINE MIR -14 194 138 2552 141 5 3 chr11 48428288 48428671 -102354882 + L1PA16 LINE L1 5783 6166 0 518 341 137 30 chr11 48429273 48429520 -102354033 + L2 LINE L2 1932 2151 -1163 2084 128 10 0 chr11 48429520 48429818 -102353735 - AluSx SINE Alu -11 301 1 518 341 137 30 chr11 48429818 48430306 -102353247 + L2 LINE L2 2151 2746 -568 304 309 15 2 chr11 48430318 48430496 -102353057 + L1ME4a LINE L1 5460 5639 -694 1880 104 49 58 chr11 48430509 48430817 -102352736 + AluSx SINE Alu 1 305 -7 709 183 9 0 chr11 48430825 48430987 -102352566 + FLAM_C SINE Alu 1 163 0 784 122 0 38 chr11 48431119 48431250 -102352303 - Charlie3 DNA MER1_type -8 2702 2577 3065 108 9 34 chr11 48431250 48431321 -102352232 - Charlie3 DNA MER1_type -2238 468 397 2302 108 7 0 chr11 48431321 48431628 -102351925 - AluSx SINE Alu -3 309 1 3065 108 9 34 chr11 48431628 48432002 -102351551 - Charlie3 DNA MER1_type -2309 397 34 367 195 138 8 chr11 48432071 48432194 -102351359 + L1ME4a LINE L1 5982 6120 -1 960 85 0 28 chr11 48432205 48432346 -102351207 - AluSg/x SINE Alu -1 311 175 2120 97 3 49 chr11 48432348 48432656 -102350897 - AluY SINE Alu -17 294 1 997 162 15 5 chr11 48432656 48432860 -102350693 - L1M4 LINE L1 -944 5202 4997 244 263 0 0 chr11 48433149 48433206 -102350347 + L2 LINE L2 3210 3266 -6 284 277 96 21 chr11 48433333 48433427 -102350126 - L2 LINE L2 -3 3269 3169 1504 304 94 50 chr11 48433558 48433662 -102349891 + L2 LINE L2 615 713 -2601 2115 137 0 0 chr11 48433662 48433961 -102349592 - AluSg SINE Alu -11 299 1 1504 304 94 50 chr11 48433961 48434988 -102348565 + L2 LINE L2 713 1795 -1519 944 304 89 65 chr11 48434993 48435467 -102348086 + L2 LINE L2 2828 3312 -1 252 302 86 60 chr11 48435624 48435930 -102347623 - L2 LINE L2 -220 3052 2743 1569 148 0 8 chr11 48435973 48436209 -102347344 + AluJb SINE Alu 3 236 -76 2324 99 0 0 chr11 48436838 48437132 -102346421 + AluSx SINE Alu 1 294 -18 392 263 142 42 chr11 48437871 48438160 -102345393 + L1ME4a LINE L1 5799 6116 -5 2310 71 0 0 chr11 48438297 48438578 -102344975 - AluY SINE Alu -14 297 17 252 344 0 25 chr11 48438820 48438942 -102344611 + L2 LINE L2 2936 3054 -218 1613 249 84 26 chr11 48439028 48439493 -102344060 - MLT1J LTR MaLR -19 492 1 248 387 0 47 chr11 48439530 48439636 -102343917 + L2 LINE L2 3134 3234 -38 449 281 51 51 chr11 48439734 48440008 -102343545 - L1ME4a LINE L1 -227 5894 5621 243 250 0 0 chr11 48440456 48440508 -102343045 - MLT1I LTR MaLR -265 144 93 2014 123 3 0 chr11 48441010 48441294 -102342259 + AluSx SINE Alu 1 285 -27 254 213 38 38 chr11 48443441 48443521 -102340032 - L2 LINE L2 -5 3308 3229 445 316 73 83 chr11 48443600 48444008 -102339545 + L2 LINE L2 2862 3265 -7 227 221 168 9 chr11 48444674 48444787 -102338766 + L1MC/D LINE L1 5780 5910 -1898 1510 211 13 7 chr11 48445000 48445308 -102338245 - AluJo SINE Alu -2 310 1 626 248 76 60 chr11 48445335 48445649 -102337904 - L1ME3A LINE L1 -3 6167 5849 230 170 43 0 chr11 48445665 48445712 -102337841 - L1MD2 LINE L1 -6 6353 6305 263 274 78 126 chr11 48445747 48446002 -102337551 + L2 LINE L2 3025 3267 -5 214 220 184 54 chr11 48446002 48446103 -102337450 + MIR SINE MIR 42 153 -66 913 252 120 48 chr11 48446103 48446496 -102337057 - MLT1L LTR MaLR 0 615 195 1333 105 0 0 chr11 48446647 48446818 -102336735 - AluSx SINE Alu -141 171 1 355 318 40 0 chr11 48447393 48447519 -102336034 + L3b LINE CR1 1192 1322 -261 2387 94 0 0 chr11 48447935 48448234 -102335319 - AluSq SINE Alu -14 299 1 231 253 0 40 chr11 48448285 48448360 -102335193 - L2 LINE L2 0 3272 3201 353 230 35 11 chr11 48448405 48448492 -102335061 - MER69 DNA AcHobo -1 2525 2437 535 173 162 124 chr11 48448525 48448710 -102334843 - MER69 DNA AcHobo -1031 195 4 459 271 88 21 chr11 48448712 48448904 -102334649 - MIR SINE MIR -45 217 13 723 227 118 5 chr11 48448981 48449201 -102334352 + L2 LINE L2 3069 3313 0 305 319 8 34 chr11 48449502 48449621 -102333932 + L3b LINE CR1 1393 1508 -75 668 235 113 14 chr11 48449626 48449839 -102333714 - MIR SINE MIR -17 245 12 300 250 36 80 chr11 48450340 48450452 -102333101 + MIR SINE MIR 19 125 -83 311 161 62 37 chr11 48450769 48450858 -102332695 + MIR SINE MIR 99 189 -62 290 232 35 63 chr11 48450962 48451104 -102332449 - L1MC5 LINE L1 -215 7746 7609 180 293 0 0 chr11 48451438 48451479 -102332074 - MIR SINE MIR -9 253 213 22 0 0 0 chr11 48451667 48451689 -102331864 + AT_rich Low_complexity Low_complexity 1 22 0 2278 100 3 13 chr11 48451967 48452278 -102331275 - AluSx SINE Alu -2 310 3 974 231 72 66 chr11 48452303 48452636 -102330917 + L1ME LINE L1 5493 5824 -297 318 67 0 0 chr11 48452701 48452746 -102330807 + (TG)n Simple_repeat Simple_repeat 2 46 0 1595 106 9 0 chr11 48452957 48453174 -102330379 - AluSx SINE Alu -93 219 1 3249 128 9 47 chr11 48453176 48453709 -102329844 - L1MC1 LINE L1 -5 6328 5816 2503 67 0 6 chr11 48453726 48454039 -102329514 - AluY SINE Alu 0 311 1 1123 144 0 45 chr11 48454041 48454243 -102329310 - AluJo SINE Alu 0 312 120 351 251 0 0 chr11 48454251 48454332 -102329221 - AluJ/FLAM SINE Alu -240 62 1 6818 234 62 35 chr11 48454333 48456374 -102327179 - L1MC/D LINE L1 -525 6088 3944 2116 125 7 0 chr11 48456374 48456671 -102326882 - AluSq SINE Alu -14 299 1 6818 234 62 35 chr11 48456671 48457697 -102325856 - L1MC/D LINE L1 -2669 3944 2946 845 141 0 0 chr11 48457739 48457867 -102325686 + MER7A DNA MER2_type 32 157 -189 9876 140 87 36 chr11 48458026 48458471 -102325082 - L1MC/D LINE L1 -4403 2023 1602 2528 47 0 3 chr11 48458471 48458771 -102324782 - AluY SINE Alu -12 299 1 9876 140 87 36 chr11 48458771 48460246 -102323307 - L1MC/D LINE L1 -4824 1602 6 1033 277 60 32 chr11 48460262 48460868 -102322685 + L2 LINE L2 2675 3309 -4 226 297 16 16 chr11 48460908 48460972 -102322581 - MIR SINE MIR -197 65 2 21 0 0 0 chr11 48461293 48461314 -102322239 + AT_rich Low_complexity Low_complexity 1 21 0 264 132 113 57 chr11 48461454 48461507 -102322046 - MIR SINE MIR -116 92 37 366 333 54 12 chr11 48461669 48461837 -102321716 + MLT1K LTR MaLR 3 177 -411 349 231 104 15 chr11 48461958 48462092 -102321461 + LTR67 LTR ERVL 407 552 -5 672 297 23 50 chr11 48462875 48463094 -102320459 - MIR SINE MIR -19 243 31 282 305 34 59 chr11 48463098 48463216 -102320337 + MIR3 SINE MIR 40 154 -54 593 245 31 18 chr11 48463240 48463403 -102320150 + MER117 DNA MER1_type 30 194 -3 345 285 101 25 chr11 48463630 48463788 -102319765 - MLT1F LTR MaLR 0 542 373 198 390 49 24 chr11 48464105 48464228 -102319325 - L2 LINE L2 -50 3222 3097 764 226 10 15 chr11 48464368 48464567 -102318986 + MER113 DNA MER1_type? 2 199 -322 3644 197 56 35 chr11 48464695 48465378 -102318175 + L1MD2 LINE L1 5467 6173 -186 2314 110 0 0 chr11 48465378 48465677 -102317876 - AluSx SINE Alu -13 299 1 3644 197 56 35 chr11 48465677 48465866 -102317687 + L1MD2 LINE L1 6173 6357 -2 2308 84 10 3 chr11 48465876 48466173 -102317380 - AluSp SINE Alu -14 299 1 415 302 0 0 chr11 48466328 48466434 -102317119 - MIR SINE MIR 0 262 157 375 329 89 0 chr11 48466434 48466580 -102316973 - LTR16A LTR ERVL -8 442 284 528 302 5 0 chr11 48466585 48466777 -102316776 - HERVL LTR ERVL -1677 3977 3785 551 281 25 0 chr11 48466838 48466959 -102316594 - HERVL LTR ERVL -1906 3090 2967 707 243 100 50 chr11 48466960 48467313 -102316240 + MLT1F1 LTR MaLR 1 371 -196 1426 306 27 29 chr11 48467325 48467883 -102315670 - HERVL LTR ERVL -4425 571 15 1560 252 41 10 chr11 48467892 48468305 -102315248 - LTR16A LTR ERVL 0 450 25 343 234 106 11 chr11 48468328 48468422 -102315131 - MIR SINE MIR -100 162 60 754 233 133 24 chr11 48469330 48469462 -102314091 - MIR SINE MIR -27 235 70 1469 241 45 11 chr11 48469462 48469815 -102313738 - MLT1A1 LTR MaLR 0 365 1 754 233 133 24 chr11 48469815 48469892 -102313661 - MIR SINE MIR -192 70 3 1740 159 3 29 chr11 48469933 48470241 -102313312 + AluJb SINE Alu 1 300 -12 2380 93 3 3 chr11 48470624 48470934 -102312619 + AluSq SINE Alu 1 310 -3 382 247 66 122 chr11 48471672 48471917 -102311636 - L1ME3A LINE L1 -219 5951 5725 372 22 0 0 chr11 48471917 48471962 -102311591 + (TG)n Simple_repeat Simple_repeat 2 46 0 382 247 66 122 chr11 48471962 48472020 -102311533 - L1ME3A LINE L1 -445 5725 5665 443 246 88 60 chr11 48472035 48472250 -102311303 - MER112 DNA MER1_type -2 258 38 1322 111 0 6 chr11 48472263 48472444 -102311109 - AluSg/x SINE Alu 0 312 133 785 178 137 44 chr11 48472500 48472657 -102310896 - MER5C DNA MER1_type -4 320 179 2772 153 33 12 chr11 48472657 48472998 -102310555 + L1MB3 LINE L1 5676 6032 -151 3029 81 0 26 chr11 48472998 48473383 -102310170 - THE1C LTR MaLR 0 375 1 2772 153 33 12 chr11 48473383 48473531 -102310022 + L1MB3 LINE L1 6032 6175 -8 785 178 137 44 chr11 48473531 48473666 -102309887 - MER5C DNA MER1_type -145 179 1 1476 250 5 8 chr11 48473677 48474053 -102309500 - L1ME3A LINE L1 -519 5645 5271 815 230 27 103 chr11 48474054 48474257 -102309296 - L2 LINE L2 -10 3303 3133 2076 148 0 0 chr11 48474257 48474555 -102308998 + AluSx SINE Alu 1 298 -14 815 230 27 103 chr11 48474555 48474682 -102308871 - L2 LINE L2 -180 3133 2998 1820 330 155 25 chr11 48474707 48475301 -102308252 - L1ME3A LINE L1 -864 5282 4767 1700 170 51 0 chr11 48475301 48475756 -102307797 - AluJb SINE Alu 0 470 2 1820 330 155 25 chr11 48475756 48476516 -102307037 - L1ME3A LINE L1 -1379 4767 3742 2309 103 3 0 chr11 48476516 48476816 -102306737 - AluSx SINE Alu -11 301 1 1820 330 155 25 chr11 48476816 48476836 -102306717 - L1ME3A LINE L1 -2404 3742 3726 282 299 77 34 chr11 48477170 48477287 -102306266 + L2 LINE L2 3141 3262 -10 1810 152 17 10 chr11 48478422 48478718 -102304835 - AluJb SINE Alu -14 298 1 21 36 0 0 chr11 48478864 48478892 -102304661 + AT_rich Low_complexity Low_complexity 1 28 0 342 200 0 0 chr11 48479334 48479394 -102304159 + L2 LINE L2 3254 3313 0 582 213 7 13 chr11 48479593 48479748 -102303805 + L1M4 LINE L1 5121 5274 -872 297 310 17 43 chr11 48480012 48480128 -102303425 - MIR SINE MIR -80 128 16 1803 123 30 63 chr11 48480272 48480574 -102302979 + AluSc SINE Alu 1 292 -17 35 54 0 0 chr11 48481301 48481357 -102302196 + AT_rich Low_complexity Low_complexity 1 56 0 4233 229 103 18 chr11 48481811 48483157 -102300396 + L2 LINE L2 1542 3013 -300 373 355 59 12 chr11 48483532 48483701 -102299852 - MER5B DNA MER1_type -1 177 1 377 65 0 16 chr11 48485186 48485248 -102298305 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr11 48486181 48486202 -102297351 + AT_rich Low_complexity Low_complexity 1 21 0 1701 128 10 79 chr11 48487311 48487522 -102296031 - AluJb SINE Alu -28 284 99 2307 88 7 0 chr11 48487522 48487818 -102295735 - AluSg SINE Alu -12 298 1 1701 128 10 79 chr11 48487818 48487911 -102295642 - AluJb SINE Alu -213 99 1 306 235 37 12 chr11 48490382 48490463 -102293090 - MIR SINE MIR -70 192 110 303 286 20 41 chr11 48490507 48490605 -102292948 - MIR SINE MIR -148 114 19 787 222 113 30 chr11 48490667 48490897 -102292656 - MIR SINE MIR -12 250 2 21 0 0 0 chr11 48493077 48493098 -102290455 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 48494978 48494999 -102288554 + AT_rich Low_complexity Low_complexity 1 21 0 2290 85 3 13 chr11 48495096 48495403 -102288150 + AluSx SINE Alu 1 304 -8 25 31 0 0 chr11 48497795 48497827 -102285726 + GC_rich Low_complexity Low_complexity 1 32 0 236 190 0 35 chr11 48497978 48498036 -102285517 + (CGG)n Simple_repeat Simple_repeat 3 58 0 225 289 132 0 chr11 48499130 48499206 -102284347 - MIR SINE MIR -67 141 56 22 0 0 0 chr11 48499854 48499876 -102283677 + AT_rich Low_complexity Low_complexity 1 22 0 439 179 37 136 chr11 48499964 48500049 -102283504 + MIR SINE MIR 88 151 -111 1851 159 3 0 chr11 48500049 48500345 -102283208 + AluJb SINE Alu 3 299 -13 439 179 37 136 chr11 48500345 48500421 -102283132 + MIR SINE MIR 151 233 -29 333 281 124 33 chr11 48500636 48500757 -102282796 + MIR SINE MIR 65 196 -66 753 181 0 22 chr11 48500974 48501226 -102282327 + AluJo SINE Alu 3 300 -12 2093 117 10 3 chr11 48501524 48501822 -102281731 + AluSx SINE Alu 1 300 -12 1215 133 6 0 chr11 48502035 48502215 -102281338 + AluSg/x SINE Alu 122 302 -8 302 211 33 23 chr11 48502217 48502312 -102281241 - L1MC4 LINE L1 -111 7697 7607 243 161 0 0 chr11 48504717 48504773 -102278780 + CT-rich Low_complexity Low_complexity 2 57 0 504 296 58 49 chr11 48504937 48505160 -102278393 + MIR SINE MIR 32 256 -6 983 209 38 0 chr11 48505842 48506052 -102277501 + AluJo SINE Alu 72 289 -23 1801 129 0 0 chr11 48506373 48506628 -102276925 - AluSx SINE Alu -15 297 43 1058 171 0 0 chr11 48506635 48506805 -102276748 - FRAM SINE Alu -6 170 1 769 46 81 0 chr11 48506809 48507072 -102276481 + (TA)n Simple_repeat Simple_repeat 1 284 0 1578 130 57 0 chr11 48507075 48507305 -102276248 - AluSq SINE Alu -70 243 1 487 270 11 49 chr11 48507571 48507756 -102275797 - MIR SINE MIR -21 241 64 539 179 11 0 chr11 48507961 48508056 -102275497 + L1ME4a LINE L1 5558 5653 -468 520 275 233 4 chr11 48508099 48508339 -102275214 + L2 LINE L2 3019 3313 0 3198 201 12 19 chr11 48509222 48509909 -102273644 - L1ME1 LINE L1 -5 6161 5480 2108 117 13 20 chr11 48510016 48510315 -102273238 - AluSx SINE Alu -15 297 1 1166 179 141 24 chr11 48510545 48510835 -102272718 + L1MC3 LINE L1 6779 7102 -683 257 258 0 0 chr11 48510835 48510897 -102272656 + MLT1F1 LTR MaLR 41 102 -465 846 65 0 9 chr11 48510944 48511052 -102272501 + AluSg/x SINE Alu 189 295 -17 3482 116 26 19 chr11 48511052 48511427 -102272126 + L1MC3 LINE L1 7204 7586 -199 13118 25 0 0 chr11 48511427 48513653 -102269900 + L1PA3 LINE L1 3929 6154 -1 3482 116 26 19 chr11 48513653 48513848 -102269705 + L1MC3 LINE L1 7586 7778 -7 331 294 53 48 chr11 48513861 48513968 -102269585 + L1ME4a LINE L1 5754 5864 -257 2198 124 0 0 chr11 48513968 48514266 -102269287 + AluSq SINE Alu 1 298 -15 331 294 53 48 chr11 48514266 48514345 -102269208 + L1ME4a LINE L1 5864 5941 -180 1869 139 7 30 chr11 48514479 48514780 -102268773 - AluJb SINE Alu -18 294 1 5732 195 20 3 chr11 48514810 48515197 -102268356 + L1P LINE L1 4007 4386 -1760 267 31 0 0 chr11 48515197 48515229 -102268324 + (CA)n Simple_repeat Simple_repeat 1 32 0 5732 195 20 3 chr11 48515229 48515980 -102267573 + L1P LINE L1 4386 5165 -981 2173 116 3 0 chr11 48716041 48716333 -102067220 + AluSq SINE Alu 1 293 -20 1075 163 6 0 chr11 48716355 48716527 -102067026 + AluSg/x SINE Alu 137 309 -3 1769 123 24 58 chr11 48716583 48716901 -102066652 + AluSx SINE Alu 1 308 0 1031 260 92 39 chr11 48716993 48717528 -102066025 + L1M4 LINE L1 4381 4951 -1195 2276 116 0 0 chr11 48717528 48717829 -102065724 + AluSg SINE Alu 1 301 -9 1031 260 92 39 chr11 48717829 48717882 -102065671 + L1M4 LINE L1 4951 5000 -1146 433 164 30 0 chr11 48718030 48718097 -102065456 + AluJ/FRAM SINE Alu 220 288 -24 1510 191 27 13 chr11 48718658 48718956 -102064597 + AluJb SINE Alu 1 302 -10 1509 133 141 8 chr11 48719213 48719469 -102064084 - AluSg1 SINE Alu -19 290 1 1888 126 42 3 chr11 48720711 48720997 -102062556 + AluSc SINE Alu 1 297 -12 2289 95 0 7 chr11 48721008 48721304 -102062249 + AluSc SINE Alu 1 294 -15 415 188 0 0 chr11 48721304 48721373 -102062180 - AluJb SINE Alu -182 130 62 829 227 0 70 chr11 48721442 48721671 -102061882 + AluJo SINE Alu 6 218 -94 374 326 43 35 chr11 48721808 48721970 -102061583 - L1ME4a LINE L1 -237 5884 5718 2262 85 7 23 chr11 48721970 48722275 -102061278 + AluY SINE Alu 1 300 -11 374 326 43 35 chr11 48722275 48722342 -102061211 - L1ME4a LINE L1 -403 5718 5653 378 0 0 0 chr11 48722662 48722704 -102060849 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1851 135 0 4 chr11 48722721 48722988 -102060565 - AluSq SINE Alu -47 266 1 1470 158 19 101 chr11 48723274 48723435 -102060118 - AluJo SINE Alu -22 290 117 2451 69 7 0 chr11 48723435 48723741 -102059812 - AluY SINE Alu -3 308 1 1861 146 10 17 chr11 48723751 48724039 -102059514 - AluSx SINE Alu -26 286 1 1470 158 19 101 chr11 48724039 48724182 -102059371 - AluJo SINE Alu -204 108 1 224 262 167 32 chr11 48725290 48725416 -102058137 - MIR SINE MIR -6 256 114 2006 142 7 0 chr11 48725425 48725721 -102057832 - AluSx SINE Alu -14 298 1 460 197 188 26 chr11 48725726 48725843 -102057710 - AluSq/x SINE Alu -176 137 2 359 309 66 11 chr11 48725844 48726024 -102057529 - MIR SINE MIR -15 247 51 2357 82 0 20 chr11 48726318 48726621 -102056932 - AluY SINE Alu -14 297 1 23 33 0 0 chr11 48726640 48726670 -102056883 + AT_rich Low_complexity Low_complexity 1 30 0 1673 152 20 37 chr11 48726702 48726998 -102056555 + AluJo SINE Alu 1 291 -21 274 260 26 0 chr11 48727070 48727188 -102056365 - L1ME LINE L1 -5948 122 2 408 20 0 0 chr11 48727291 48727340 -102056213 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 776 128 0 8 chr11 48727365 48727482 -102056071 - AluJb SINE Alu -195 117 2 1682 178 18 7 chr11 48727552 48727838 -102055715 - AluSx SINE Alu -21 291 3 614 204 0 0 chr11 48727973 48728081 -102055472 - AluJb SINE Alu -14 298 191 2332 89 0 7 chr11 48728219 48728522 -102055031 - AluY SINE Alu -10 301 1 530 247 28 11 chr11 48728526 48728704 -102054849 - L1M4 LINE L1 -3537 2609 2429 3779 121 4 4 chr11 48729064 48729575 -102053978 - MER9 LTR ERVK 0 511 1 240 48 0 0 chr11 48729592 48729634 -102053919 - LTR66 LTR ERVL -171 439 398 204 97 0 0 chr11 48729636 48729667 -102053886 + (CA)n Simple_repeat Simple_repeat 2 32 0 3379 237 107 42 chr11 48729714 48730842 -102052711 - L1MC4 LINE L1 -106 7702 6528 2053 131 17 0 chr11 48730842 48731140 -102052413 - AluSx SINE Alu -9 303 1 3379 237 107 42 chr11 48731140 48731601 -102051952 - L1MC4 LINE L1 -1280 6528 6098 1996 142 7 0 chr11 48731759 48732062 -102051491 - AluSg1 SINE Alu -4 305 1 262 213 180 0 chr11 48732220 48732281 -102051272 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 180 0 0 0 chr11 48734085 48734105 -102049448 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 22 35 0 0 chr11 48734160 48734189 -102049364 + AT_rich Low_complexity Low_complexity 1 29 0 258 182 61 15 chr11 48734390 48734456 -102049097 - MSTD LTR MaLR -5 391 323 705 153 0 0 chr11 48734456 48734580 -102048973 + CT-rich Low_complexity Low_complexity 3 126 0 1647 158 0 26 chr11 48734735 48735008 -102048545 - AluJb SINE Alu -23 289 24 42238 65 2 5 chr11 48735193 48740591 -102042962 + L1P LINE L1 7 5390 -756 1774 79 4 0 chr11 48740691 48740920 -102042633 + THE1A-int LTR MaLR 1350 1579 -1 2850 96 3 0 chr11 48740921 48741275 -102042278 + THE1A LTR MaLR 1 355 0 4140 38 8 2 chr11 48741957 48742441 -102041112 - L1PA2 LINE L1 -54 6101 5612 334 23 0 0 chr11 48742441 48742475 -102041078 + L1PA2 LINE L1 6111 6153 -2 27 0 0 0 chr11 48742493 48742520 -102041033 + AT_rich Low_complexity Low_complexity 1 27 0 2530 165 59 9 chr11 48743411 48743853 -102039700 + MLT2C2 LTR ERVL 1 464 0 557 296 14 0 chr11 48743909 48744051 -102039502 - MIR SINE MIR -70 192 49 444 279 46 83 chr11 48745376 48745616 -102037937 + MLT1J LTR MaLR 216 446 -65 2050 115 0 7 chr11 48745747 48746025 -102037528 + AluY SINE Alu 1 276 -35 225 0 0 0 chr11 48746029 48746054 -102037499 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 11810 121 3 8 chr11 48746072 48747803 -102035750 + L1P LINE L1 11 1732 -4414 237 268 82 21 chr11 48747903 48748000 -102035553 - L2 LINE L2 -617 2697 2595 1697 187 7 0 chr11 48748002 48748296 -102035257 + AluJb SINE Alu 1 296 -16 3275 125 32 0 chr11 48748550 48749021 -102034532 - MER1A DNA MER1_type 0 529 44 347 201 7 117 chr11 48749322 48749476 -102034077 - LTR41 LTR ERVL -1 772 636 1352 214 6 45 chr11 48749476 48749620 -102033933 + AluJo SINE Alu 2 150 -162 238 25 25 25 chr11 48749620 48749660 -102033893 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 1352 214 6 45 chr11 48749660 48749828 -102033725 + AluJo SINE Alu 150 302 -10 2258 99 3 7 chr11 48750129 48750433 -102033120 + AluSq SINE Alu 1 303 -10 444 254 138 22 chr11 48750442 48750580 -102032973 - MIR SINE MIR -86 176 23 27 0 0 0 chr11 48751844 48751871 -102031682 + AT_rich Low_complexity Low_complexity 1 27 0 2161 140 0 0 chr11 48752388 48752695 -102030858 + AluSq SINE Alu 1 307 -6 2017 129 0 3 chr11 48753044 48753354 -102030199 - AluSx SINE Alu 0 312 1 1653 131 67 35 chr11 48753750 48754032 -102029521 - AluY SINE Alu -20 291 1 339 278 79 24 chr11 48754344 48754470 -102029083 - MER117 DNA MER1_type -41 156 24 233 309 24 36 chr11 48754524 48754608 -102028945 - MIR SINE MIR -59 149 67 1928 157 0 3 chr11 48755503 48755796 -102027757 + AluSx SINE Alu 1 292 -20 1939 138 3 0 chr11 48755903 48756199 -102027354 + AluSg SINE Alu 1 297 -13 2124 86 0 4 chr11 48756287 48756566 -102026987 + AluY SINE Alu 22 299 -12 1922 171 0 0 chr11 48756742 48757040 -102026513 - AluSx SINE Alu -10 302 5 1210 154 10 10 chr11 48757085 48757286 -102026267 - AluSg/x SINE Alu -16 296 96 48 88 0 0 chr11 48757402 48757527 -102026026 + AT_rich Low_complexity Low_complexity 1 125 0 251 35 0 0 chr11 48757633 48757662 -102025891 + AluJo SINE Alu 13 41 -261 1945 142 17 3 chr11 48757666 48757968 -102025585 - AluSx SINE Alu -5 307 2 1455 195 15 7 chr11 48757968 48758240 -102025313 + AluJo SINE Alu 27 300 -12 440 280 84 58 chr11 48758648 48758959 -102024594 + L2 LINE L2 2286 2604 -710 2057 154 17 0 chr11 48759056 48759355 -102024198 - AluSg SINE Alu -6 304 1 703 276 103 63 chr11 48759392 48759471 -102024082 + L2 LINE L2 2649 2723 -590 1182 208 18 5 chr11 48759471 48759692 -102023861 - MER58A DNA MER1_type 0 224 1 703 276 103 63 chr11 48759692 48760228 -102023325 + L2 LINE L2 2723 3308 -5 590 228 31 24 chr11 48760294 48760421 -102023132 + AluJb SINE Alu 121 248 -64 1047 209 5 9 chr11 48760423 48760638 -102022915 + AluJo SINE Alu 85 298 -14 1834 174 3 25 chr11 48760641 48760957 -102022596 + AluSx SINE Alu 1 309 -3 213 263 93 51 chr11 48760962 48761080 -102022473 + L2 LINE L2 2707 2829 -485 2168 134 3 0 chr11 48761306 48761611 -102021942 - AluSg SINE Alu -4 306 1 693 212 35 153 chr11 48762803 48763208 -102020345 + L1MC4 LINE L1 6717 7073 -888 289 206 98 22 chr11 48763230 48763322 -102020231 + L1MC5 LINE L1 7808 7906 -55 1724 128 11 40 chr11 48763368 48763641 -102019912 + AluSq SINE Alu 14 278 -35 1182 144 3 1 chr11 48763641 48767498 -102016055 - ALR/Alpha Satellite centromeric -4 3865 1 1456 136 0 5 chr11 48767599 48767812 -102015741 - AluJo SINE Alu -100 212 1 2045 115 0 56 chr11 48769570 48769892 -102013661 + AluSx SINE Alu 1 304 -8 2149 139 0 0 chr11 48770554 48770849 -102012704 + AluSg SINE Alu 1 295 -15 22 0 0 0 chr11 48771367 48771389 -102012164 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr11 48772583 48772607 -102010946 + (A)n Simple_repeat Simple_repeat 1 24 0 642 186 93 0 chr11 48773132 48773261 -102010292 - Tigger3(Golem) DNA MER2_type 0 3038 2898 420 173 13 0 chr11 48773262 48773337 -102010216 - Tigger3(Golem) DNA MER2_type -2953 76 1 1220 254 71 21 chr11 48773500 48774024 -102009529 + Charlie2a DNA MER1_type 539 1088 -1774 416 219 125 0 chr11 48774752 48774848 -102008705 + Tigger3(Golem) DNA MER2_type 1 108 -2921 30104 48 5 1 chr11 48774920 48779646 -102003907 - L1PA4 LINE L1 0 6155 1415 348 77 0 46 chr11 48779645 48779710 -102003843 - L1PA5 LINE L1 -118 6036 5975 * 235 77 0 0 chr11 48779744 48779783 -102003770 - L1PA5 LINE L1 -181 5974 5936 234 171 0 0 chr11 48779870 48779905 -102003648 + Alu SINE Alu 2 36 -266 469 50 0 0 chr11 48779909 48779969 -102003584 - L1PA4 LINE L1 -56 6099 6040 909 282 68 56 chr11 48780283 48780411 -102003142 + L1ME3 LINE L1 5295 5420 -742 1392 152 49 98 chr11 48780411 48780739 -102002814 + AluSx SINE Alu 1 312 0 909 282 68 56 chr11 48780739 48780909 -102002644 + L1ME3 LINE L1 5420 5587 -575 426 20 0 0 chr11 48780909 48780960 -102002593 + (TA)n Simple_repeat Simple_repeat 2 52 0 909 282 68 56 chr11 48780960 48781267 -102002286 + L1ME3 LINE L1 5587 5908 -254 740 187 169 72 chr11 48781267 48781545 -102002008 + MLT1A1 LTR MaLR 1 305 -60 1784 144 7 21 chr11 48781545 48781829 -102001724 + AluSq SINE Alu 1 280 -33 1240 126 3 2 chr11 48781929 48788608 -101994945 - ALR/Alpha Satellite centromeric 0 6690 1 550 141 0 0 chr11 48788615 48788700 -101994853 - AluSg/x SINE Alu -8 301 217 1182 145 7 3 chr11 48788700 48794310 -101989243 - ALR/Alpha Satellite centromeric 0 11834 6244 1544 72 86 5 chr11 48794310 48794519 -101989034 + AluY SINE Alu 67 292 -19 1182 145 7 3 chr11 48794519 48800496 -101983057 - ALR/Alpha Satellite centromeric -5590 6244 1 540 0 0 0 chr11 48800496 48800556 -101982997 + (TA)n Simple_repeat Simple_repeat 1 60 0 1072 149 5 0 chr11 48800558 48801813 -101981740 - ALR/Alpha Satellite centromeric -3 1260 1 293 241 175 51 chr11 48802369 48802506 -101981047 + MIR3 SINE MIR 29 182 -26 186 363 77 0 chr11 48803136 48803227 -101980326 - MIR SINE MIR 0 262 165 593 280 48 43 chr11 48803228 48803435 -101980118 - L2 LINE L2 -5 3308 3101 1647 177 11 11 chr11 48803450 48803727 -101979826 + AluJb SINE Alu 11 287 -25 22 56 0 0 chr11 48803729 48803765 -101979788 + AT_rich Low_complexity Low_complexity 1 36 0 199 273 26 39 chr11 48803770 48803847 -101979706 - L2 LINE L2 -207 3106 3031 5958 12 0 1 chr11 48804514 48805192 -101978361 + L1PA2 LINE L1 5478 6154 -1 3131 47 2 0 chr11 48805270 48805693 -101977860 - L1P LINE L1 -748 5398 4975 3663 45 0 0 chr11 48805693 48806177 -101977376 + L1PA4 LINE L1 5698 6187 0 378 0 0 0 chr11 48806319 48806361 -101977192 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 531 82 0 0 chr11 48806849 48806922 -101976631 + (TG)n Simple_repeat Simple_repeat 2 74 0 269 331 67 44 chr11 48806984 48807325 -101976228 + MLT1J LTR MaLR 5 353 -158 1098 224 58 19 chr11 48807835 48808147 -101975406 + MLT2B1 LTR ERVL 1 324 -196 1400 135 139 0 chr11 48808150 48808402 -101975151 + Ricksha DNA DNA 3 289 -2957 * 7222 143 53 7 chr11 48808400 48809733 -101973820 + Ricksha DNA DNA 1821 3223 -39 707 167 68 123 chr11 48809733 48809984 -101973569 + MLT2B1 LTR ERVL 284 520 0 2611 231 51 26 chr11 48810804 48811604 -101971949 - MER99 DNA DNA -4 824 5 323 103 0 17 chr11 48811848 48811906 -101971647 + (GA)n Simple_repeat Simple_repeat 1 57 0 244 182 0 0 chr11 48812343 48812387 -101971166 + L3 LINE CR1 647 690 -887 181 292 194 0 chr11 48812513 48812585 -101970968 + MIR SINE MIR 172 257 -5 411 333 62 1 chr11 48812841 48813024 -101970529 - MIR SINE MIR -39 169 19 3320 213 26 82 chr11 48814261 48815287 -101968266 - LTR5 LTR ERVK 0 969 1 339 300 112 24 chr11 48816189 48816476 -101967077 - Tigger8 DNA MER2_type -118 548 237 2395 39 0 0 chr11 48816872 48817152 -101966401 + L1P LINE L1 4095 4374 -1772 688 293 38 9 chr11 48817219 48817431 -101966122 + MIR SINE MIR 10 227 -35 21 0 0 0 chr11 48817431 48817452 -101966101 + AT_rich Low_complexity Low_complexity 1 21 0 344 256 119 36 chr11 48817804 48818099 -101965454 - MLT1G LTR MaLR 0 549 226 2194 132 0 0 chr11 48818297 48818592 -101964961 - AluSx SINE Alu -17 295 1 430 342 84 18 chr11 48819035 48819260 -101964293 + MIR SINE MIR 16 255 -7 685 313 0 25 chr11 48819279 48819477 -101964076 + MLT1K LTR MaLR 373 565 -23 337 373 28 17 chr11 48819503 48819680 -101963873 - MER5A DNA MER1_type -10 179 1 828 201 15 10 chr11 48819841 48820040 -101963513 - L1MA6 LINE L1 -2 6298 6099 277 253 96 0 chr11 48821356 48821439 -101962114 - MIR SINE MIR -63 145 55 243 253 107 0 chr11 48821564 48821639 -101961914 + Charlie8 DNA MER1_type 110 192 -2225 804 269 115 40 chr11 48821824 48821877 -101961676 - MLT1I LTR MaLR 0 409 361 2082 117 47 70 chr11 48821877 48822261 -101961292 + THE1C LTR MaLR 1 375 0 804 269 115 40 chr11 48822261 48822582 -101960971 - MLT1I LTR MaLR -48 361 7 249 334 103 0 chr11 48822763 48822873 -101960680 + MIR SINE MIR 46 164 -69 1337 213 29 35 chr11 48822877 48823220 -101960333 - MLT1A1 LTR MaLR -24 341 1 373 323 19 38 chr11 48823359 48823517 -101960036 + MIR SINE MIR 78 232 -30 263 200 129 47 chr11 48823624 48823709 -101959844 - MLT1A1 LTR MaLR -188 186 95 2292 98 3 16 chr11 48824336 48824652 -101958901 - AluSx SINE Alu 0 312 1 366 159 16 0 chr11 48824654 48824717 -101958836 - MIR SINE MIR -113 149 86 2657 114 8 0 chr11 48824781 48825133 -101958420 + THE1A LTR MaLR 1 355 0 8143 109 4 2 chr11 48825133 48826247 -101957306 + THE1A-int LTR MaLR 1 1116 -464 968 53 0 0 chr11 48827010 48827123 -101956430 + AluSg/x SINE Alu 170 282 -30 718 11 11 11 chr11 48827222 48827314 -101956239 + (TTTC)n Simple_repeat Simple_repeat 1 92 0 194 367 0 0 chr11 48828146 48828206 -101955347 - L2 LINE L2 -12 3260 3201 926 180 0 18 chr11 48828386 48828553 -101955000 - L1PB4 LINE L1 0 6156 5993 1739 139 21 0 chr11 48828554 48828834 -101954719 - L1PB4 LINE L1 -213 5943 5658 765 215 82 15 chr11 48829122 48829317 -101954236 - MER3 DNA MER1_type 0 209 2 195 42 0 0 chr11 48830733 48830757 -101952796 + (T)n Simple_repeat Simple_repeat 1 24 0 297 344 33 0 chr11 48830771 48830922 -101952631 + L1ME LINE L1 5496 5651 -470 1574 98 10 0 chr11 48830922 48831127 -101952426 + AluSq SINE Alu 85 291 -22 617 297 99 5 chr11 48831162 48831354 -101952199 + MIR SINE MIR 25 234 -28 235 311 66 8 chr11 48831432 48831554 -101951999 + MIR SINE MIR 72 200 -62 23 68 0 0 chr11 48831562 48831606 -101951947 + AT_rich Low_complexity Low_complexity 1 44 0 244 74 0 56 chr11 48831651 48831705 -101951848 + (TATAA)n Simple_repeat Simple_repeat 5 55 0 227 229 57 16 chr11 48831708 48831830 -101951723 + (TA)n Simple_repeat Simple_repeat 2 128 0 1983 105 0 0 chr11 48831981 48832238 -101951315 - AluSx SINE Alu -8 304 48 270 0 0 0 chr11 48832509 48832539 -101951014 + (TG)n Simple_repeat Simple_repeat 2 31 0 23 0 0 0 chr11 48832559 48832582 -101950971 + AT_rich Low_complexity Low_complexity 1 23 0 1662 164 30 0 chr11 48832582 48832850 -101950703 - AluJo SINE Alu -23 289 14 332 272 12 12 chr11 48833810 48833891 -101949662 + L2 LINE L2 3213 3293 -20 2254 66 0 14 chr11 48833915 48834204 -101949349 + AluY SINE Alu 21 305 -6 577 154 0 0 chr11 48834214 48834292 -101949261 + AluJ/FLAM SINE Alu 2 79 -233 1751 107 9 0 chr11 48834292 48834554 -101948999 + AluSx SINE Alu 48 311 0 25 0 0 0 chr11 48834566 48834591 -101948962 + AT_rich Low_complexity Low_complexity 1 25 0 261 321 97 46 chr11 48834596 48834741 -101948812 + L1MC3 LINE L1 5355 5491 -635 1683 176 22 22 chr11 48834741 48835053 -101948500 + AluJo SINE Alu 1 312 0 261 321 97 46 chr11 48835053 48835279 -101948274 + L1MC3 LINE L1 5491 5746 -380 459 0 0 0 chr11 48835518 48835569 -101947984 + (TTTAA)n Simple_repeat Simple_repeat 1 51 0 387 269 0 28 chr11 48835571 48835679 -101947874 - MIR SINE MIR -98 164 60 198 296 182 8 chr11 48835704 48835755 -101947798 + MIR SINE MIR 34 75 -187 2066 135 3 0 chr11 48835755 48836051 -101947502 - AluSx SINE Alu -15 297 1 198 296 182 8 chr11 48836051 48836131 -101947422 + MIR SINE MIR 75 188 -74 850 244 78 38 chr11 48836155 48836474 -101947079 + L1M4 LINE L1 4113 4444 -1702 5988 178 20 167 chr11 48836485 48836773 -101946780 + L1MC3 LINE L1 5746 6075 -1710 2187 124 0 0 chr11 48836773 48837063 -101946490 - AluSx SINE Alu -22 290 1 5988 178 20 167 chr11 48837063 48838153 -101945400 + L1MC3 LINE L1 6075 7324 -461 2194 114 0 7 chr11 48838153 48838450 -101945103 + AluSp SINE Alu 1 295 -18 5988 178 20 167 chr11 48838450 48838564 -101944989 + L1MC3 LINE L1 7324 7453 -332 4324 34 14 4 chr11 48838564 48839062 -101944491 - L1PA4 LINE L1 0 6155 5653 5988 178 20 167 chr11 48839062 48839313 -101944240 + L1MC3 LINE L1 7453 7151 -634 243 259 0 0 chr11 48839313 48839367 -101944186 + MLT1F1 LTR MaLR 71 124 -443 5988 178 20 167 chr11 48839367 48839813 -101943740 + L1MC3 LINE L1 7150 7660 -125 708 173 43 62 chr11 48839819 48839846 -101943707 + L1MC3 LINE L1 7564 7590 -195 2140 127 0 0 chr11 48839846 48840137 -101943416 + AluSp SINE Alu 1 291 -22 708 173 43 62 chr11 48840137 48840317 -101943236 + L1MC3 LINE L1 7590 7767 -18 609 226 38 8 chr11 48841264 48841397 -101942156 - AluJo SINE Alu -75 237 101 2968 133 60 11 chr11 48841426 48841892 -101941661 - LTR22B LTR ERVK -3 489 1 303 282 68 49 chr11 48842350 48842513 -101941040 - MIR3 SINE MIR -6 202 37 2133 152 0 0 chr11 48842854 48843164 -101940389 + AluSx SINE Alu 3 312 0 2226 133 42 31 chr11 48843755 48844115 -101939438 + THE1B LTR MaLR 1 364 0 1552 83 10 0 chr11 48844535 48844727 -101938826 - AluSq SINE Alu -110 203 10 435 254 26 0 chr11 48845447 48845561 -101937992 + MIR SINE MIR 92 208 -54 672 97 34 41 chr11 48845581 48845877 -101937676 + (TAGA)n Simple_repeat Simple_repeat 1 293 0 575 134 29 35 chr11 48845907 48846079 -101937474 + (TAGA)n Simple_repeat Simple_repeat 3 173 0 295 296 0 0 chr11 48846111 48846199 -101937354 + (TA)n Simple_repeat Simple_repeat 2 89 0 3031 146 6 10 chr11 48846386 48846873 -101936680 - L1PB4 LINE L1 -2 6154 5670 226 345 0 27 chr11 48846934 48847044 -101936509 - L2 LINE L2 -299 2973 2867 2596 169 41 159 chr11 48847298 48848122 -101935431 - LTR8A LTR ERV1 0 727 1 1747 154 14 10 chr11 48849049 48849342 -101934211 + AluJo SINE Alu 1 294 -18 260 291 12 18 chr11 48849407 48849507 -101934046 + MIR SINE MIR 48 143 -65 1964 136 3 0 chr11 48849515 48849802 -101933751 + AluSx SINE Alu 22 309 -3 336 311 38 0 chr11 48849882 48849988 -101933565 + MIR3 SINE MIR 61 170 -38 2389 145 63 36 chr11 48850103 48850353 -101933200 - MSTB LTR MaLR 0 426 158 1745 162 0 0 chr11 48850353 48850677 -101932876 + AluY SINE Alu 17 340 0 2389 145 63 36 chr11 48850677 48850840 -101932713 - MSTB LTR MaLR -268 158 1 2118 127 17 0 chr11 48851709 48852008 -101931545 - AluSx SINE Alu -8 304 1 239 189 42 11 chr11 48852013 48852108 -101931445 + (TTATA)n Simple_repeat Simple_repeat 5 102 0 23 33 0 0 chr11 48852193 48852223 -101931330 + AT_rich Low_complexity Low_complexity 1 30 0 1781 203 55 0 chr11 48852320 48852650 -101930903 - MER7A DNA MER2_type 0 346 1 315 49 0 0 chr11 48852690 48852731 -101930822 + (TG)n Simple_repeat Simple_repeat 2 42 0 499 145 0 0 chr11 48852732 48852801 -101930752 - AluSg/x SINE Alu -29 283 215 288 128 0 0 chr11 48852802 48852841 -101930712 - AluSp SINE Alu -131 172 134 1141 162 19 37 chr11 48853023 48853239 -101930314 + MLT1D LTR MaLR 3 214 -291 1386 201 39 32 chr11 48853239 48853522 -101930031 + AluJo SINE Alu 1 285 -17 467 161 0 12 chr11 48853523 48853604 -101929949 - MLT1D LTR MaLR -391 114 35 400 125 0 0 chr11 48853604 48853660 -101929893 + Alu SINE Alu 238 293 -19 2420 174 16 19 chr11 48854312 48854645 -101928908 - MSTB LTR MaLR 0 426 93 2100 142 49 27 chr11 48854645 48855012 -101928541 + THE1C LTR MaLR 1 375 0 2420 174 16 19 chr11 48855012 48855103 -101928450 - MSTB LTR MaLR -333 93 3 2395 39 0 0 chr11 48855455 48855735 -101927818 + L1P LINE L1 4095 4374 -1772 688 293 38 9 chr11 48855802 48856014 -101927539 + MIR SINE MIR 10 227 -35 21 0 0 0 chr11 48856014 48856035 -101927518 + AT_rich Low_complexity Low_complexity 1 21 0 351 249 123 37 chr11 48856396 48856683 -101926870 - MLT1G LTR MaLR -8 541 226 2136 139 0 13 chr11 48856881 48857190 -101926363 - AluSx SINE Alu -7 305 1 622 293 29 24 chr11 48857920 48858128 -101925425 + MLT1K LTR MaLR 373 581 -7 371 367 28 17 chr11 48858139 48858316 -101925237 - MER5A DNA MER1_type -10 179 1 953 181 15 10 chr11 48858476 48858675 -101924878 - L1MA6 LINE L1 -2 6298 6099 246 261 81 54 chr11 48860005 48860116 -101923437 - MIR3 SINE MIR -40 168 55 252 253 107 0 chr11 48860241 48860316 -101923237 + Charlie8 DNA MER1_type 110 192 -2225 830 251 120 43 chr11 48860501 48860554 -101922999 - MLT1I LTR MaLR 0 409 362 2184 110 47 65 chr11 48860554 48860936 -101922617 + THE1C LTR MaLR 1 375 0 830 251 120 43 chr11 48860936 48861256 -101922297 - MLT1I LTR MaLR -47 362 7 236 314 154 0 chr11 48861437 48861543 -101922010 + MIR SINE MIR 46 164 -69 1378 199 29 19 chr11 48861582 48861894 -101921659 - MLT1A1 LTR MaLR -50 315 1 371 323 19 38 chr11 48862033 48862191 -101921362 + MIR SINE MIR 78 232 -30 276 188 129 47 chr11 48862298 48862383 -101921170 - MLT1A1 LTR MaLR -188 186 95 1132 155 0 0 chr11 48862570 48862762 -101920791 + AluSg/x SINE Alu 116 307 0 871 113 8 0 chr11 48864046 48864170 -101919383 - AluSq/x SINE Alu -188 125 1 327 175 16 0 chr11 48864172 48864235 -101919318 - MIR SINE MIR -113 149 86 2831 102 3 0 chr11 48864299 48864653 -101918900 + THE1A LTR MaLR 1 355 0 12104 107 3 1 chr11 48864653 48866229 -101917324 + THE1A-int LTR MaLR 1 1579 -1 2688 99 3 0 chr11 48866230 48866584 -101916969 + THE1A LTR MaLR 1 355 0 182 378 0 51 chr11 48866675 48866773 -101916780 - MIR SINE MIR -90 118 26 2388 158 59 9 chr11 48868169 48868611 -101914942 + MLT2C2 LTR ERVL 1 464 0 529 359 11 6 chr11 48868667 48868848 -101914705 - MIR SINE MIR -70 192 11 2222 138 0 0 chr11 48869528 48869833 -101913720 + AluSg SINE Alu 1 305 -5 2229 134 0 0 chr11 48870327 48870634 -101912919 + AluSx SINE Alu 1 307 -5 2049 135 0 14 chr11 48871128 48871425 -101912128 + AluSp SINE Alu 1 293 -20 352 229 13 59 chr11 48871576 48871729 -101911824 + MER33 DNA MER1_type 43 188 -136 1633 154 90 4 chr11 48871808 48872087 -101911466 + AluSx SINE Alu 2 304 -8 21 0 0 0 chr11 48872410 48872431 -101911122 + AT_rich Low_complexity Low_complexity 1 21 0 2154 126 0 0 chr11 48872431 48872716 -101910837 - AluSx SINE Alu -27 285 1 6255 105 1 2 chr11 48874022 48875012 -101908541 + L1P LINE L1 2561 3549 -2597 1227 125 3 1 chr11 48875112 48879128 -101904425 + ALR/Alpha Satellite centromeric 1 4023 -25 * 4114 92 17 4 chr11 48879123 48880134 -101903419 + MER11A LTR ERVK 1 1261 -5 1154 136 3 1 chr11 48880137 48881919 -101901634 + ALR/Alpha Satellite centromeric 1 1785 -53 19714 71 2 6 chr11 48881919 48885366 -101898187 + L1PA5 LINE L1 2719 6151 -3 1284 126 4 2 chr11 48885372 48887156 -101896397 + ALR/Alpha Satellite centromeric 1 1785 -60 411 303 41 74 chr11 48887574 48887818 -101895735 + MLT1J LTR MaLR 216 451 -60 2141 101 0 0 chr11 48887941 48888217 -101895336 + AluY SINE Alu 1 276 -35 192 40 0 0 chr11 48888221 48888246 -101895307 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 38359 69 4 3 chr11 48888264 48894399 -101889154 + L1PA4 LINE L1 11 6152 -3 365 320 82 24 chr11 48894787 48894961 -101888592 + MIR3 SINE MIR 20 207 -1 1865 157 17 3 chr11 48894975 48895269 -101888284 + AluSp SINE Alu 2 299 -14 967 248 216 19 chr11 48895464 48895973 -101887580 - L2 LINE L2 -2 3311 2664 894 116 18 92 chr11 48895976 48896140 -101887413 + AluSg/x SINE Alu 138 289 -21 595 237 64 0 chr11 48896150 48896323 -101887230 - L2 LINE L2 -639 2675 2492 246 214 143 80 chr11 48896389 48896501 -101887052 + L2 LINE L2 3154 3272 0 1561 177 22 48 chr11 48896623 48896939 -101886614 - AluSx SINE Alu -4 308 1 6618 53 4 0 chr11 48897150 48897992 -101885561 + L1PA4 LINE L1 5311 6155 0 565 246 0 0 chr11 48899073 48899187 -101884366 - MER81 DNA DNA 0 114 1 659 177 1 137 chr11 48899367 48899586 -101883967 + L1MC4a LINE L1 6677 6836 -972 1671 176 3 13 chr11 48899590 48899892 -101883661 + AluJo SINE Alu 14 312 0 884 158 0 0 chr11 48899903 48900036 -101883517 + AluSq/x SINE Alu 1 133 -179 2120 129 7 0 chr11 48900106 48900408 -101883145 + AluSx SINE Alu 1 304 -8 2316 109 0 0 chr11 48900948 48901252 -101882301 + AluY SINE Alu 1 304 -7 33 25 0 0 chr11 48902856 48902896 -101880657 + AT_rich Low_complexity Low_complexity 1 40 0 2383 75 0 0 chr11 48902896 48903214 -101880339 - L1PA7 LINE L1 -28 6126 5809 257 57 0 0 chr11 48904123 48904158 -101879395 - MADE1 DNA Mariner -45 35 1 212 292 0 0 chr11 48904875 48904923 -101878630 + (CACG)n Simple_repeat Simple_repeat 1 48 0 3052 174 19 74 chr11 48904948 48905679 -101877874 + LTR8 LTR ERV1 1 691 0 725 297 90 18 chr11 48905719 48906062 -101877491 - L2 LINE L2 -137 3176 2809 2150 230 107 33 chr11 48906134 48906982 -101876571 + L1MC4 LINE L1 6962 7872 -170 5414 116 29 46 chr11 48907071 48908645 -101874908 - pTR5 LTR ERV1 0 2438 743 237 204 0 0 chr11 48908648 48908697 -101874856 + L1MC4 LINE L1 7992 8040 -2 261 306 71 0 chr11 48909558 48909656 -101873897 + MIR SINE MIR 36 140 -122 7757 18 0 0 chr11 48910910 48912055 -101871498 - L1PA2 LINE L1 0 6155 5010 1134 28 7 0 chr11 48912055 48912199 -101871354 + L1PA2 LINE L1 4861 5005 -1141 2198 122 0 0 chr11 48912201 48912496 -101871057 - AluSx SINE Alu -17 295 1 291 28 0 0 chr11 48912656 48912692 -101870861 + (CA)n Simple_repeat Simple_repeat 2 37 0 437 295 126 40 chr11 48912712 48913085 -101870468 + L2 LINE L2 2224 2628 -686 22 0 0 0 chr11 48913500 48913522 -101870031 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 48913626 48913648 -101869905 + AT_rich Low_complexity Low_complexity 1 22 0 408 68 94 26 chr11 48913648 48914062 -101869491 + (TA)n Simple_repeat Simple_repeat 1 441 0 303 84 96 30 chr11 48914108 48914274 -101869279 + (TA)n Simple_repeat Simple_repeat 1 177 0 380 110 74 33 chr11 48914316 48914824 -101868729 + (TA)n Simple_repeat Simple_repeat 1 528 0 264 101 0 87 chr11 48914830 48914968 -101868585 + (TTA)n Simple_repeat Simple_repeat 3 128 0 28 29 0 0 chr11 48914978 48915013 -101868540 + AT_rich Low_complexity Low_complexity 1 35 0 434 65 89 24 chr11 48915013 48915182 -101868371 + (TA)n Simple_repeat Simple_repeat 1 180 0 224 152 0 65 chr11 48915182 48915228 -101868325 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 312 245 0 34 chr11 48915561 48915675 -101867878 + FRAM/FAM SINE Alu 21 79 -96 27 29 0 0 chr11 48917060 48917094 -101866459 + AT_rich Low_complexity Low_complexity 1 34 0 257 230 14 0 chr11 48917371 48917445 -101866108 + (CATATA)n Simple_repeat Simple_repeat 6 80 0 372 304 110 37 chr11 48917483 48917937 -101865616 + L1ME4a LINE L1 5635 6121 0 522 252 5 57 chr11 48917959 48918169 -101865384 + L1ME LINE L1 5605 5803 -318 2323 76 0 3 chr11 48918177 48918468 -101865085 - AluY SINE Alu -21 290 1 845 152 0 15 chr11 48918497 48918629 -101864924 + FLAM_C SINE Alu 1 130 -13 237 239 0 15 chr11 48919362 48919429 -101864124 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 229 235 198 0 chr11 48919590 48919671 -101863882 - L2 LINE L2 -8 3305 3209 447 276 10 0 chr11 48921941 48922039 -101861514 - MIR SINE MIR -138 124 26 1862 116 35 64 chr11 48922045 48922356 -101861197 + AluSx SINE Alu 1 302 -10 257 0 0 29 chr11 48922727 48922761 -101860792 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 342 0 0 0 chr11 48923460 48923498 -101860055 + (TG)n Simple_repeat Simple_repeat 2 39 0 7980 135 25 48 chr11 48923729 48925206 -101858347 - THE1-int LTR MaLR -131 1449 7 228 200 0 0 chr11 48925480 48925530 -101858023 + (TATG)n Simple_repeat Simple_repeat 2 51 0 804 181 0 0 chr11 48925617 48925744 -101857809 + AluJb SINE Alu 1 127 -185 336 230 48 85 chr11 48926180 48926345 -101857208 - MIR SINE MIR -25 237 79 4803 119 113 117 chr11 48926453 48928001 -101855552 + pTR5 LTR ERV1 743 2438 0 613 228 114 65 chr11 48929001 48929247 -101854306 + MIR SINE MIR 4 261 -1 2050 140 76 15 chr11 48929977 48930319 -101853234 + THE1B LTR MaLR 2 364 0 1024 274 65 36 chr11 48930449 48931011 -101852542 + L2 LINE L2 2481 3057 -256 375 295 0 0 chr11 48931102 48931207 -101852346 + MER94 DNA DNA 27 131 -3 471 239 22 108 chr11 48931219 48931441 -101852112 + L2 LINE L2 3111 3313 0 2649 95 20 0 chr11 48931707 48932064 -101851489 - THE1B LTR MaLR 0 364 1 204 409 65 0 chr11 48932320 48932413 -101851140 + L2 LINE L2 3185 3283 -30 28 0 0 0 chr11 48933344 48933372 -101850181 + AT_rich Low_complexity Low_complexity 1 28 0 7417 42 0 0 chr11 48933459 48934380 -101849173 - L1PA3 LINE L1 0 6155 5235 3368 42 0 0 chr11 48934380 48934813 -101848740 + L1PA3 LINE L1 4808 5240 -906 26024 65 4 1 chr11 48936022 48940376 -101843177 - L1PA5 LINE L1 0 6154 1793 1103 135 11 2 chr11 48940479 48940959 -101842594 + ALR/Alpha Satellite centromeric 1 484 -5 1116 163 4 4 chr11 48940970 48943552 -101840001 + ALR/Alpha Satellite centromeric 1 2581 -1 318 148 0 0 chr11 48943555 48943616 -101839937 - L1P1 LINE L1 -626 5529 5469 9581 50 0 0 chr11 48943625 48945584 -101837969 - L1PA4 LINE L1 -8 6147 4189 3932 89 47 0 chr11 48945584 48946151 -101837402 + L1PA7 LINE L1 5558 6154 0 1188 145 4 4 chr11 48946259 48952061 -101831492 + ALR/Alpha Satellite centromeric 1 6312 -25 3123 146 8 14 chr11 48952061 48952575 -101830978 - MER9 LTR ERVK 0 511 1 6391 123 5 0 chr11 48952643 48953625 -101829928 - HERVK9 LTR ERVK -334 5582 4596 1160 149 5 4 chr11 48953625 48957418 -101826135 + ALR/Alpha Satellite centromeric 1 3795 -4 15099 32 0 1 chr11 48957419 48959996 -101823557 - L1PA2 LINE L1 -3 6152 3576 1201 156 7 2 chr11 48960000 48984103 -101799450 - ALR/Alpha Satellite centromeric 0 24213 1 1074 154 9 1 chr11 48984203 48985209 -101798344 + ALR/Alpha Satellite centromeric 1 1013 0 1061 147 4 1 chr11 48985223 48985982 -101797571 + ALR/Alpha Satellite centromeric 1 761 -56 1202 146 3 2 chr11 48986033 48991805 -101791748 + ALR/Alpha Satellite centromeric 1 5783 -32 2927 171 4 4 chr11 48991815 48992324 -101791229 - MER9 LTR ERVK -2 509 1 1901 118 4 0 chr11 48992324 48992603 -101790950 - HERVK9 LTR ERVK 0 5916 5637 7265 102 3 2 chr11 48992700 48994570 -101788983 - HERVK9 LTR ERVK -282 5634 3711 13107 95 5 0 chr11 48994570 48996481 -101787072 - HERVK9 LTR ERVK -3130 2786 824 210 217 0 83 chr11 48996481 48996541 -101787012 - MER5B DNA MER1_type -69 109 55 4928 132 7 3 chr11 48996541 48997301 -101786252 - HERVK9 LTR ERVK -5153 763 1 2909 176 4 4 chr11 48997301 48997812 -101785741 - MER9 LTR ERVK 0 511 1 1206 147 6 1 chr11 48997813 49001682 -101781871 + ALR/Alpha Satellite centromeric 1 3885 -4 1148 153 7 2 chr11 49001694 49006322 -101777231 + ALR/Alpha Satellite centromeric 1 4648 -30 6312 88 20 12 chr11 49006322 49007473 -101776080 - L1PA5 LINE L1 -1 6153 5002 2201 23 0 0 chr11 49007473 49007729 -101775824 - L1PA2 LINE L1 -2 6153 5895 7891 84 30 1 chr11 49007729 49008843 -101774710 - L1PA5 LINE L1 -1145 5001 3856 1153 156 8 4 chr11 49008843 49010624 -101772929 + ALR/Alpha Satellite centromeric 1 1787 -7 5584 156 33 24 chr11 49010626 49011685 -101771868 + MER11C LTR ERVK 3 1071 0 28016 126 9 3 chr11 49011685 49015822 -101767731 + HERVK11 LTR ERVK 1 4162 -3791 4124 94 11 0 chr11 49015817 49016368 -101767185 + HERVK11 LTR ERVK 6209 6765 -1188 * 7456 91 1 0 chr11 49016352 49017351 -101766202 + HERVK11 LTR ERVK 6954 7953 0 5304 157 41 28 chr11 49017351 49018404 -101765149 + MER11C LTR ERVK 1 1067 -4 1195 147 7 1 chr11 49018409 49027898 -101755655 + ALR/Alpha Satellite centromeric 1 9540 -1 1193 145 6 1 chr11 49027918 49029236 -101754317 + ALR/Alpha Satellite centromeric 1 1323 0 1033 160 9 7 chr11 49029248 49030340 -101753213 + ALR/Alpha Satellite centromeric 1 1093 -97 6497 80 0 6 chr11 49030372 49031753 -101751800 - L1PA4 LINE L1 0 6155 4778 20696 54 7 1 chr11 49031753 49034442 -101749111 + L1PA4 LINE L1 2060 4763 -1383 1260 145 4 2 chr11 49034444 49046334 -101737219 - ALR/Alpha Satellite centromeric 0 23836 11970 4408 70 0 0 chr11 49046334 49046902 -101736651 + L1PA4 LINE L1 5585 6152 -3 6362 87 0 1 chr11 49046902 49047756 -101735797 + L1PA4 LINE L1 5291 6155 0 1260 145 4 2 chr11 49047756 49058236 -101725317 - ALR/Alpha Satellite centromeric -11865 11971 1 5809 157 27 9 chr11 49058270 49059299 -101724254 - MER11C LTR ERVK -23 1048 1 7592 80 7 0 chr11 49059299 49060292 -101723261 - HERVK11 LTR ERVK 0 7953 6954 * 23243 97 6 6 chr11 49060275 49063509 -101720044 - HERVK11 LTR ERVK -1187 6766 3532 13163 108 1 17 chr11 49063557 49065438 -101718115 - HERVK11 LTR ERVK -4424 3529 1679 23240 26 0 0 chr11 49065438 49068216 -101715337 - L1HS LINE L1 -1350 4796 2019 8065 11 0 0 chr11 49068216 49069567 -101713986 + L1HS LINE L1 4805 6155 0 11097 122 30 1 chr11 49069577 49071217 -101712336 - HERVK11 LTR ERVK -6265 1688 1 5327 163 35 25 chr11 49071217 49072278 -101711275 - MER11C LTR ERVK 0 1071 1 1191 139 3 8 chr11 49072278 49072638 -101710915 - ALR/Alpha Satellite centromeric -1 1748 1387 1983 134 0 3 chr11 49072638 49072930 -101710623 - AluY SINE Alu -20 291 1 1191 139 3 8 chr11 49072930 49074036 -101709517 - ALR/Alpha Satellite centromeric -362 1387 1 1164 141 6 3 chr11 49074052 49078069 -101705484 - ALR/Alpha Satellite centromeric -3 4029 1 1239 140 6 0 chr11 49078083 49080379 -101703174 - ALR/Alpha Satellite centromeric -6 2310 1 1221 142 4 3 chr11 49080390 49087025 -101696528 - ALR/Alpha Satellite centromeric 0 6643 1 843 202 26 26 chr11 49087408 49087601 -101695952 + MER46A DNA MER2_type 43 235 -1 610 219 62 12 chr11 49087610 49087770 -101695783 - MIR SINE MIR 0 262 95 260 266 13 38 chr11 49088484 49088563 -101694990 + MIR SINE MIR 156 232 -30 288 0 0 0 chr11 49090075 49090107 -101693446 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 424 233 188 7 chr11 49090956 49091095 -101692458 - MER5A DNA MER1_type -5 184 1 3333 216 66 27 chr11 49092009 49092846 -101690707 - L1MC3 LINE L1 -457 7328 6450 1970 156 0 0 chr11 49092846 49093147 -101690406 + AluSg SINE Alu 1 301 -9 3333 216 66 27 chr11 49093147 49093236 -101690317 - L1MC3 LINE L1 -1335 6450 6366 1711 199 0 0 chr11 49093408 49093705 -101689848 + AluJb SINE Alu 1 297 -15 1490 150 9 4 chr11 49094561 49094794 -101688759 + AluSp SINE Alu 1 234 -79 387 140 0 0 chr11 49094794 49094851 -101688702 - AluJ/FLAM SINE Alu -200 102 46 752 299 88 32 chr11 49094935 49095500 -101688053 - L1ME3A LINE L1 -310 5860 5264 642 194 129 48 chr11 49095675 49095923 -101687630 + MER33 DNA MER1_type 57 324 0 21 0 0 0 chr11 49095935 49095956 -101687597 + AT_rich Low_complexity Low_complexity 1 21 0 291 310 128 15 chr11 49096224 49096685 -101686868 - L1ME3A LINE L1 -1371 4775 4263 1481 170 31 7 chr11 49096774 49097068 -101686485 + AluSq SINE Alu 1 301 -12 183 203 0 0 chr11 49097082 49097141 -101686412 + (CAGAC)n Simple_repeat Simple_repeat 3 61 0 339 295 0 0 chr11 49097148 49097243 -101686310 + (GACTG)n Simple_repeat Simple_repeat 5 99 0 324 286 0 0 chr11 49097248 49097416 -101686137 + (CAGAC)n Simple_repeat Simple_repeat 3 170 0 300 270 0 0 chr11 49097505 49097631 -101685922 + (GACTG)n Simple_repeat Simple_repeat 3 128 0 219 224 0 0 chr11 49097643 49097692 -101685861 + (GACTG)n Simple_repeat Simple_repeat 1 49 0 212 211 14 0 chr11 49097693 49097764 -101685789 + (CAGAC)n Simple_repeat Simple_repeat 4 75 0 269 288 0 0 chr11 49097768 49097841 -101685712 + (GACTG)n Simple_repeat Simple_repeat 1 73 0 351 281 0 0 chr11 49097842 49098002 -101685551 + (CAGAC)n Simple_repeat Simple_repeat 4 163 0 402 297 0 0 chr11 49098006 49098124 -101685429 + (GACTG)n Simple_repeat Simple_repeat 3 120 0 285 283 0 0 chr11 49098127 49098279 -101685274 + (CAGAC)n Simple_repeat Simple_repeat 4 155 0 228 292 0 0 chr11 49098311 49098441 -101685112 + (CAGAC)n Simple_repeat Simple_repeat 3 132 0 412 187 7 29 chr11 49098493 49098586 -101684967 - AluJ/FLAM SINE Alu -240 62 1 1614 146 27 8 chr11 49098965 49099225 -101684328 + AluSq SINE Alu 49 313 0 714 234 15 29 chr11 49099392 49099597 -101683956 - L1ME1 LINE L1 -180 5986 5785 764 181 45 39 chr11 49099600 49099755 -101683798 + MER21B LTR ERV1 1 156 -707 1848 183 0 0 chr11 49100058 49100358 -101683195 + AluSx SINE Alu 1 300 -12 1251 128 4 3 chr11 49102482 49109432 -101674121 - ALR/Alpha Satellite centromeric 0 6962 1 4433 86 21 6 chr11 49109432 49110449 -101673104 - MER11A LTR ERVK 0 1266 1 1263 128 2 11 chr11 49110449 49113338 -101670215 - ALR/Alpha Satellite centromeric 0 2864 1 1284 125 3 1 chr11 49113350 49120340 -101663213 - ALR/Alpha Satellite centromeric 0 7000 1 19710 71 1 6 chr11 49120346 49123794 -101659759 - L1PA5 LINE L1 -3 6151 2719 1182 132 5 1 chr11 49123794 49125648 -101657905 - ALR/Alpha Satellite centromeric 0 1860 1 1058 136 4 1 chr11 49125750 49126595 -101656958 - ALR/Alpha Satellite centromeric 0 847 1 5424 156 27 10 chr11 49126629 49127659 -101655894 - MER11C LTR ERVK -23 1048 1 7244 78 7 0 chr11 49127659 49128652 -101654901 - HERVK11 LTR ERVK 0 7953 6954 * 44850 105 11 15 chr11 49128635 49135428 -101648125 - HERVK11 LTR ERVK -1187 6766 1 5255 165 35 25 chr11 49135428 49136489 -101647064 - MER11C LTR ERVK 0 1071 1 1133 139 3 8 chr11 49136489 49136849 -101646704 - ALR/Alpha Satellite centromeric -1 1747 1387 1990 134 0 3 chr11 49136849 49137141 -101646412 - AluY SINE Alu -20 291 1 1133 139 3 8 chr11 49137141 49138246 -101645307 - ALR/Alpha Satellite centromeric -361 1387 1 951 163 0 9 chr11 49138262 49138504 -101645049 - ALR/Alpha Satellite centromeric 0 239 1 2307 120 0 0 chr11 49188504 49188828 -101594725 - HERVK11 LTR ERVK -676 7277 6954 * 26435 96 9 11 chr11 49188812 49192920 -101590633 - HERVK11 LTR ERVK -1188 6765 1165 5005 175 19 1 chr11 49192920 49193756 -101589797 - HERVK11 LTR ERVK -7102 851 1 7976 87 5 2 chr11 49193756 49194824 -101588729 - MER11C LTR ERVK 0 1071 1 1189 153 8 2 chr11 49194828 49196355 -101587198 + ALR/Alpha Satellite centromeric 1 1536 -9 1223 147 15 5 chr11 49196367 49205247 -101578306 + ALR/Alpha Satellite centromeric 1 8976 -64 9217 52 1 0 chr11 49205247 49206406 -101577147 - L1PA4 LINE L1 -939 5207 4048 6620 60 25 0 chr11 49206406 49207330 -101576223 + L1PA4 LINE L1 5207 6152 -3 1222 148 5 2 chr11 49207345 49211274 -101572279 + ALR/Alpha Satellite centromeric 1 3938 -4 4433 66 0 12 chr11 49211274 49211864 -101571689 + L1PA4 LINE L1 5570 6152 -3 198 0 0 0 chr11 49211870 49211892 -101571661 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1158 160 5 2 chr11 49211903 49213738 -101569815 + ALR/Alpha Satellite centromeric 1 1841 -30 2409 68 0 0 chr11 49213738 49214060 -101569493 - L1PA4 LINE L1 -1 6154 5833 1192 147 5 2 chr11 49214058 49222456 -101561097 - ALR/Alpha Satellite centromeric 0 8426 1 1192 146 3 1 chr11 49222469 49224953 -101558600 - ALR/Alpha Satellite centromeric -1 2489 1 1196 166 6 3 chr11 49224965 49241589 -101541964 + ALR/Alpha Satellite centromeric 1 16674 -11 1289 153 3 2 chr11 49241603 49268340 -101515213 + ALR/Alpha Satellite centromeric 1 26779 -2 38339 63 3 68 chr11 49268349 49270289 -101513264 + L1PA3 LINE L1 7 2071 -4084 7354 50 2 0 chr11 49270289 49271988 -101511565 - L1PA3 LINE L1 0 6155 4456 38339 63 3 68 chr11 49271988 49276622 -101506931 + L1PA3 LINE L1 2071 6155 0 1245 149 3 1 chr11 49276633 49287782 -101495771 - ALR/Alpha Satellite centromeric 0 11165 1 1073 194 2 3 chr11 49287882 49289056 -101494497 - ALR/Alpha Satellite centromeric 0 1173 1 1178 147 5 2 chr11 49289188 49295784 -101487769 + ALR/Alpha Satellite centromeric 1 6616 -16 14309 54 1 0 chr11 49295786 49297784 -101485769 - L1PA3 LINE L1 -597 5558 3560 4352 74 20 3 chr11 49297784 49298358 -101485195 + L1PA3 LINE L1 5549 6153 -2 1198 149 7 4 chr11 49298457 49307514 -101476039 + ALR/Alpha Satellite centromeric 1 9086 -67 7882 14 0 0 chr11 49307526 49308427 -101475126 - L1HS LINE L1 -1 6154 5254 1148 144 5 4 chr11 49308429 49312004 -101471549 + ALR/Alpha Satellite centromeric 1 3578 -1 28836 66 2 2 chr11 49312012 49318165 -101465388 + L1PA3 LINE L1 7 6155 0 1182 138 9 2 chr11 49318182 49320839 -101462714 - ALR/Alpha Satellite centromeric -8 2674 1 40123 73 1 5 chr11 49320841 49327012 -101456541 - L1PA3 LINE L1 -3 6152 7 1209 154 4 2 chr11 49327021 49333437 -101450116 - ALR/Alpha Satellite centromeric -7 6426 1 1266 162 2 2 chr11 49333544 49358682 -101424871 - ALR/Alpha Satellite centromeric 0 29928 4492 2313 84 0 0 chr11 49358682 49358966 -101424587 + AluY SINE Alu 11 294 -17 1266 162 2 2 chr11 49358966 49363460 -101420093 - ALR/Alpha Satellite centromeric -25436 4492 1 22 35 0 0 chr11 49563765 49563794 -101219759 + GC_rich Low_complexity Low_complexity 1 29 0 953 178 129 0 chr11 49564048 49564250 -101219303 - MIR SINE MIR -1 261 34 455 262 21 53 chr11 49564254 49564441 -101219112 - MIR SINE MIR -78 184 4 346 277 298 5 chr11 49565207 49565395 -101218158 - MIR SINE MIR -1 261 19 180 0 0 0 chr11 49566114 49566134 -101217419 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2286 107 0 0 chr11 49566136 49566425 -101217128 - AluSq SINE Alu -24 289 1 241 231 275 0 chr11 49566809 49566900 -101216653 - L2 LINE L2 -5 3308 3193 2288 95 27 0 chr11 49567008 49567302 -101216251 - AluSp SINE Alu -11 302 1 21 57 0 0 chr11 49569423 49569458 -101214095 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr11 49569553 49569577 -101213976 + AT_rich Low_complexity Low_complexity 1 24 0 587 81 0 117 chr11 49569578 49569689 -101213864 + HY3 scRNA scRNA 1 98 -3 851 151 214 0 chr11 49569747 49569906 -101213647 + AluSg SINE Alu 2 194 -116 1285 75 0 13 chr11 49570021 49570180 -101213373 - AluY SINE Alu -154 157 1 457 266 55 8 chr11 49570348 49570476 -101213077 + L2 LINE L2 3179 3312 -1 28 0 0 0 chr11 49570843 49570871 -101212682 + AT_rich Low_complexity Low_complexity 1 28 0 2061 84 0 0 chr11 49571023 49571309 -101212244 - L1PB1 LINE L1 0 6151 5866 871 174 0 52 chr11 49572311 49572483 -101211070 - MER20 DNA MER1_type 0 219 57 370 346 22 53 chr11 49572661 49572889 -101210664 - L2 LINE L2 -25 3247 3027 2344 86 13 16 chr11 49572975 49573289 -101210264 - AluSp SINE Alu 0 313 1 251 239 0 30 chr11 49574102 49574169 -101209384 + MLT1L LTR MaLR 1 65 -550 627 332 55 15 chr11 49574324 49574649 -101208904 + MLT1J LTR MaLR 1 338 -173 230 240 200 13 chr11 49574955 49575030 -101208523 + MLT1K LTR MaLR 327 415 -173 1211 194 32 48 chr11 49575082 49575535 -101208018 - MLT1B LTR MaLR -1 389 1 210 239 30 30 chr11 49575652 49575719 -101207834 + L2 LINE L2 3244 3310 -3 413 237 71 101 chr11 49575794 49575963 -101207590 - MIR SINE MIR -91 171 8 478 317 79 22 chr11 49576378 49576605 -101206948 + LTR33A LTR ERVL 7 246 -277 560 258 96 0 chr11 49577092 49577270 -101206283 + MIR SINE MIR 56 250 -12 2395 79 3 26 chr11 49577588 49577893 -101205660 - AluSx SINE Alu -14 298 1 320 290 43 0 chr11 49577896 49577989 -101205564 - MIR SINE MIR -115 147 51 226 345 78 21 chr11 49578731 49578873 -101204680 + MIR SINE MIR 2 151 -111 1017 108 0 22 chr11 49579415 49579554 -101203999 - AluJo SINE Alu -176 136 1 21 57 0 0 chr11 49579638 49579673 -101203880 + AT_rich Low_complexity Low_complexity 1 35 0 416 260 114 29 chr11 49579766 49580039 -101203514 - L1ME4a LINE L1 -14 6107 5812 1720 141 0 0 chr11 49580148 49580421 -101203132 - AluSx SINE Alu 0 315 43 294 188 58 14 chr11 49580550 49580619 -101202934 + AluSc SINE Alu 211 282 -17 1056 138 38 0 chr11 49580632 49580792 -101202761 + AluSg/x SINE Alu 125 290 -20 1199 185 10 0 chr11 49580829 49581029 -101202524 + AluJb SINE Alu 109 310 -2 235 227 43 80 chr11 49581029 49581192 -101202361 - L1ME4a LINE L1 -45 6076 5920 1308 246 163 25 chr11 49581300 49581582 -101201971 - MLT1J LTR MaLR -2 509 267 1901 193 17 3 chr11 49581582 49581940 -101201613 + MLT1A1 LTR MaLR 1 363 -2 1308 246 163 25 chr11 49581940 49582104 -101201449 - MLT1J LTR MaLR -244 267 1 329 149 108 0 chr11 49582123 49582197 -101201356 - L1ME4a LINE L1 -214 5907 5826 2152 136 0 16 chr11 49582201 49582518 -101201035 - AluJb SINE Alu 0 312 1 229 192 0 0 chr11 49582585 49582637 -101200916 - L1ME4a LINE L1 -299 5822 5771 321 255 83 35 chr11 49583197 49583342 -101200211 - MER5A DNA MER1_type -24 165 14 446 271 233 5 chr11 49583453 49583663 -101199890 + MIR SINE MIR 5 262 0 29 28 0 0 chr11 49583663 49583699 -101199854 + AT_rich Low_complexity Low_complexity 1 36 0 198 288 0 45 chr11 49583741 49583807 -101199746 + MIR SINE MIR 200 262 0 2165 126 10 0 chr11 49583900 49584209 -101199344 + AluSx SINE Alu 1 312 0 1967 155 0 14 chr11 49584224 49584514 -101199039 + AluJb SINE Alu 1 286 -26 429 20 0 0 chr11 49584521 49584571 -101198982 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2113 101 7 24 chr11 49584590 49584887 -101198666 + AluSx SINE Alu 1 292 -20 477 291 111 41 chr11 49586124 49586368 -101197185 + MIR SINE MIR 2 262 0 * 602 334 51 42 chr11 49586360 49586533 -101197020 + L2 LINE L2 2566 2736 -536 2360 111 0 0 chr11 49586533 49586830 -101196723 + AluSx SINE Alu 1 297 -15 602 334 51 42 chr11 49586830 49587188 -101196365 + L2 LINE L2 2736 3096 -176 2396 112 0 3 chr11 49587336 49587649 -101195904 + AluSq SINE Alu 1 312 -1 330 206 69 69 chr11 49587766 49587897 -101195656 - MIR SINE MIR -70 192 62 244 150 67 17 chr11 49587933 49587993 -101195560 - L2 LINE L2 -40 3232 3170 366 262 19 19 chr11 49588009 49588112 -101195441 + MIR SINE MIR 9 111 -151 734 273 155 31 chr11 49588137 49588439 -101195114 + L2 LINE L2 2699 2962 -351 2008 145 0 42 chr11 49588439 49588585 -101194968 + AluJb SINE Alu 1 129 -183 2253 134 0 0 chr11 49588585 49588892 -101194661 + AluSx SINE Alu 1 307 -5 2008 145 0 42 chr11 49588892 49589056 -101194497 + AluJb SINE Alu 129 298 -14 734 273 155 31 chr11 49589056 49589297 -101194256 + L2 LINE L2 2962 3313 0 2372 113 3 0 chr11 49589368 49589679 -101193874 + AluSx SINE Alu 1 312 0 21 0 0 0 chr11 49589696 49589717 -101193836 + AT_rich Low_complexity Low_complexity 1 21 0 355 273 102 16 chr11 49591300 49591428 -101192125 + L2 LINE L2 3123 3261 -11 213 204 0 74 chr11 49591380 49591434 -101192119 + MIR SINE MIR 210 259 -3 * 294 279 23 81 chr11 49591712 49591755 -101191798 - MER5B DNA MER1_type -16 162 118 2463 96 0 3 chr11 49591755 49592067 -101191486 - AluSx SINE Alu -1 311 1 294 279 23 81 chr11 49592067 49592195 -101191358 - MER5B DNA MER1_type -60 118 1 1030 199 114 33 chr11 49592470 49592687 -101190866 - MER58B DNA MER1_type -2102 318 73 2386 91 7 0 chr11 49592687 49592994 -101190559 + AluSq SINE Alu 2 310 -3 1030 199 114 33 chr11 49592994 49593047 -101190506 - MER58B DNA MER1_type -2347 73 26 278 321 107 6 chr11 49593182 49593341 -101190212 + MIR SINE MIR 32 206 -56 349 327 36 8 chr11 49594470 49594645 -101188908 - MIR SINE MIR -9 199 13 2011 140 3 0 chr11 49595337 49595622 -101187931 + AluSx SINE Alu 1 286 -26 301 236 333 14 chr11 49596012 49596156 -101187397 - MIR3 SINE MIR -13 195 6 633 257 101 68 chr11 49597191 49597313 -101186240 + MIR SINE MIR 18 134 -128 2327 119 0 0 chr11 49597313 49597623 -101185930 + AluSx SINE Alu 1 310 -2 633 257 101 68 chr11 49597623 49597737 -101185816 + MIR SINE MIR 134 262 0 1176 284 54 49 chr11 49598089 49598432 -101185121 + L2 LINE L2 2776 3127 -186 1830 144 0 0 chr11 49598432 49598688 -101184865 - AluSx SINE Alu -18 294 39 1176 284 54 49 chr11 49598688 49598876 -101184677 + L2 LINE L2 3127 3313 0 2390 85 3 0 chr11 49598928 49599221 -101184332 - AluSx SINE Alu -11 301 8 281 273 93 41 chr11 49599358 49599530 -101184023 + L1MC4a LINE L1 5256 5436 -2372 727 150 0 16 chr11 49599539 49599666 -101183887 + AluSq/x SINE Alu 2 126 -187 1707 174 4 7 chr11 49599683 49599959 -101183594 + AluJb SINE Alu 24 298 -14 1410 239 106 32 chr11 49599959 49600000 -101183553 + L1MC4a LINE L1 5432 5469 -2339 2114 111 24 3 chr11 49600000 49600297 -101183256 + AluY SINE Alu 1 303 -8 1410 239 106 32 chr11 49600297 49600728 -101182825 + L1MC4a LINE L1 5469 5939 -1869 1131 144 59 11 chr11 49600743 49600930 -101182623 + AluJo SINE Alu 12 207 -105 2409 81 7 0 chr11 49600934 49601232 -101182321 + AluY SINE Alu 12 311 0 342 0 0 0 chr11 49601240 49601278 -101182275 + (CA)n Simple_repeat Simple_repeat 2 39 0 439 198 135 0 chr11 49601637 49601748 -101181805 + MIR SINE MIR 76 201 -61 265 216 4 0 chr11 49601857 49601942 -101181611 - L1P LINE L1 -822 5342 5256 1987 118 4 15 chr11 49602320 49602434 -101181119 + AluSx SINE Alu 23 137 -175 2545 78 0 3 chr11 49602434 49602742 -101180811 + AluY SINE Alu 1 307 -4 1987 118 4 15 chr11 49602742 49602899 -101180654 + AluSx SINE Alu 137 291 -21 307 267 95 9 chr11 49603482 49603598 -101179955 + MIR SINE MIR 26 151 -111 227 240 110 50 chr11 49603998 49604098 -101179455 + MIR SINE MIR 141 246 -16 200 176 0 0 chr11 49604185 49604219 -101179334 - L2 LINE L2 -1 3271 3238 329 172 58 46 chr11 49604764 49604851 -101178702 - MIR3 SINE MIR -5 203 116 266 300 77 15 chr11 49605725 49605855 -101177698 + MIR3 SINE MIR 11 148 -60 319 213 0 0 chr11 49605856 49605917 -101177636 + MIR SINE MIR 94 154 -108 834 226 6 6 chr11 49605917 49606094 -101177459 - MER104 DNA Tc2 -2 178 2 309 258 103 0 chr11 49606095 49606192 -101177361 + MIR SINE MIR 156 262 0 237 295 39 0 chr11 49606719 49606797 -101176756 - MIR3 SINE MIR -29 179 99 342 0 0 0 chr11 49606799 49606837 -101176716 + (CA)n Simple_repeat Simple_repeat 2 39 0 455 322 187 5 chr11 49607427 49607818 -101175735 + L2 LINE L2 2852 3313 0 291 262 5 141 chr11 49609197 49609403 -101174150 - L2 LINE L2 -90 3182 3005 2213 119 0 0 chr11 49609419 49609730 -101173823 + AluSq SINE Alu 1 311 -2 31 68 0 0 chr11 49610403 49610462 -101173091 + GC_rich Low_complexity Low_complexity 1 59 0 211 228 0 101 chr11 49611397 49611476 -101172077 + CT-rich Low_complexity Low_complexity 3 73 0 194 0 39 0 chr11 49611636 49611662 -101171891 + (CA)n Simple_repeat Simple_repeat 1 27 0 382 201 83 69 chr11 49611970 49612114 -101171439 + MIR3 SINE MIR 15 160 -48 288 234 30 137 chr11 49612527 49612644 -101170909 + MIR SINE MIR 7 88 -174 2658 41 0 19 chr11 49612644 49612961 -101170592 - AluY SINE Alu 0 311 1 288 234 30 137 chr11 49612961 49613093 -101170460 + MIR SINE MIR 88 232 -30 225 254 28 14 chr11 49613147 49613218 -101170335 + MIR SINE MIR 65 136 -72 346 252 70 35 chr11 49614483 49614626 -101168927 + L2 LINE L2 3166 3313 0 769 271 153 3 chr11 49615000 49615321 -101168232 + L2 LINE L2 2922 3290 -23 1118 254 0 18 chr11 49615384 49615667 -101167886 + AluJb SINE Alu 9 286 -26 1789 154 0 11 chr11 49616232 49616511 -101167042 + AluJo SINE Alu 1 276 -36 2163 113 0 13 chr11 49617003 49617305 -101166248 + AluSq SINE Alu 1 298 -15 184 263 35 0 chr11 49618582 49618639 -101164914 + L2 LINE L2 2927 2985 -287 371 152 0 63 chr11 49618647 49618726 -101164827 + MIR SINE MIR 74 147 -61 284 257 124 26 chr11 49618713 49618826 -101164727 + L2 LINE L2 3149 3272 0 * 2147 95 40 0 chr11 49619153 49619487 -101164066 + AluSg SINE Alu 3 348 0 461 328 116 0 chr11 49619726 49619915 -101163638 + MIR SINE MIR 52 262 0 2048 144 3 10 chr11 49619919 49620232 -101163321 - AluSx SINE Alu -1 311 1 866 267 42 12 chr11 49620642 49620882 -101162671 + MIR SINE MIR 14 260 -2 2038 130 3 3 chr11 49620946 49621247 -101162306 + AluSx SINE Alu 1 301 -11 282 372 60 28 chr11 49621358 49621608 -101161945 - L2 LINE L2 -162 3110 2853 245 206 34 49 chr11 49623063 49623146 -101160407 + MIR SINE MIR 69 144 -64 * 798 236 66 29 chr11 49623135 49623376 -101160177 - MIR SINE MIR 0 262 13 189 236 69 28 chr11 49623384 49623456 -101160097 + MIR3 SINE MIR 125 199 -9 185 329 106 24 chr11 49624239 49624324 -101159229 - L2 LINE L2 -2 3270 3179 1722 124 44 25 chr11 49624487 49624761 -101158792 - AluJo SINE Alu -23 289 11 316 309 146 0 chr11 49624855 49624965 -101158588 + L2 LINE L2 3147 3272 0 288 254 105 35 chr11 49626321 49626435 -101157118 - MIR SINE MIR -71 137 16 204 363 10 20 chr11 49628228 49628330 -101155223 + MIR3 SINE MIR 54 154 -54 332 284 18 18 chr11 49629386 49629495 -101154058 + MIR SINE MIR 104 212 -50 598 178 86 193 chr11 49629716 49629985 -101153568 - MIR SINE MIR -1 261 22 2029 146 7 3 chr11 49630266 49630575 -101152978 + AluSx SINE Alu 1 310 -2 767 211 17 6 chr11 49630664 49630839 -101152714 - MIR SINE MIR 0 262 86 661 224 65 53 chr11 49630853 49631098 -101152455 + MER112 DNA MER1_type 8 255 -5 186 328 16 0 chr11 49631100 49631164 -101152389 - MIR SINE MIR -177 85 21 250 333 17 17 chr11 49631526 49631700 -101151853 + (ATGGTG)n Simple_repeat Simple_repeat 1 174 0 945 147 159 0 chr11 49632233 49632396 -101151157 + MER5A DNA MER1_type 1 189 0 994 60 23 15 chr11 49632437 49632570 -101150983 + AluSq/x SINE Alu 1 134 -178 2590 40 0 0 chr11 49632574 49632878 -101150675 + AluY SINE Alu 1 304 -7 1331 178 3 81 chr11 49632884 49633205 -101150348 + AluJb SINE Alu 1 296 -16 1784 119 3 82 chr11 49633207 49633526 -101150027 + AluSx SINE Alu 1 294 -18 1974 116 28 0 chr11 49633532 49633816 -101149737 + AluSx SINE Alu 5 296 -16 1566 84 0 10 chr11 49633817 49634061 -101149492 + AluY SINE Alu 82 323 0 314 309 21 0 chr11 49634315 49634409 -101149144 + MIR SINE MIR 59 154 -108 253 282 63 73 chr11 49634399 49634543 -101149010 - MIR SINE MIR 0 262 119 * 2239 110 0 0 chr11 49634543 49634844 -101148709 + AluSg SINE Alu 1 301 -9 253 282 63 73 chr11 49634844 49634905 -101148648 - MIR SINE MIR -143 119 59 571 268 36 14 chr11 49634987 49635197 -101148356 + MIR SINE MIR 31 247 -15 1683 150 4 0 chr11 49635205 49635458 -101148095 + AluSx SINE Alu 1 254 -58 27 0 0 0 chr11 49635486 49635513 -101148040 + AT_rich Low_complexity Low_complexity 1 27 0 1986 138 0 16 chr11 49635561 49635873 -101147680 + AluJo SINE Alu 1 307 -5 373 242 0 97 chr11 49635952 49636036 -101147517 + MIR SINE MIR 119 189 -73 2178 91 10 0 chr11 49636036 49636333 -101147220 + AluSp SINE Alu 3 302 -11 373 242 0 97 chr11 49636333 49636372 -101147181 + MIR SINE MIR 189 230 -32 22 0 0 0 chr11 49636512 49636534 -101147019 + AT_rich Low_complexity Low_complexity 1 22 0 827 197 0 14 chr11 49636551 49636698 -101146855 - AluJb SINE Alu -32 280 136 352 304 82 14 chr11 49637202 49637422 -101146131 + L2 LINE L2 2475 2709 -605 390 322 0 0 chr11 49637447 49637537 -101146016 - L1MC4 LINE L1 -1339 6703 6614 384 322 0 0 chr11 49637463 49637553 -101146000 + L1MC4 LINE L1 6614 6703 -1339 * 252 0 0 0 chr11 49637553 49637581 -101145972 + (TG)n Simple_repeat Simple_repeat 2 29 0 180 0 0 0 chr11 49637580 49637600 -101145953 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 2417 55 0 3 chr11 49637600 49637892 -101145661 - AluY SINE Alu -20 291 1 1021 135 18 0 chr11 49637895 49638058 -101145495 - FRAM SINE Alu -7 169 4 1818 158 0 41 chr11 49638201 49638304 -101145249 - AluJb SINE Alu -9 303 197 1902 140 10 16 chr11 49638304 49638612 -101144941 - AluSx SINE Alu -6 306 1 1818 158 0 41 chr11 49638612 49638824 -101144729 - AluJb SINE Alu -115 197 1 603 239 11 40 chr11 49638826 49639002 -101144551 - MIR SINE MIR -10 252 82 333 345 18 0 chr11 49640382 49640492 -101143061 - MIR SINE MIR -127 135 24 284 238 10 99 chr11 49640548 49640649 -101142904 + MIR3 SINE MIR 110 201 -7 187 382 36 9 chr11 49640933 49641043 -101142510 + L2 LINE L2 2972 3084 -188 1977 123 3 3 chr11 49641685 49642008 -101141545 - AluSx SINE Alu 0 323 1 977 133 40 0 chr11 49642788 49642938 -101140615 - AluSg/x SINE Alu -20 292 137 2002 118 24 0 chr11 49642938 49643235 -101140318 - AluSc SINE Alu -5 304 1 183 282 0 0 chr11 49643283 49643322 -101140231 - MIR SINE MIR -137 71 33 502 202 19 11 chr11 49643613 49643740 -101139813 - MIR SINE MIR -48 160 34 1033 154 39 0 chr11 49644584 49644766 -101138787 + MER5A DNA MER1_type 1 189 0 475 247 139 36 chr11 49644777 49644844 -101138709 + MER5A DNA MER1_type 4 63 -126 1993 113 35 0 chr11 49644844 49645128 -101138425 + AluSq SINE Alu 1 294 -19 475 247 139 36 chr11 49645128 49645226 -101138327 + MER5A DNA MER1_type 63 186 -3 262 267 112 9 chr11 49645247 49645363 -101138190 + MIR3 SINE MIR 8 135 -73 225 242 165 0 chr11 49645521 49645612 -101137941 + MIR SINE MIR 145 250 -12 2192 98 0 3 chr11 49645930 49646225 -101137328 - AluSx SINE Alu -14 298 5 214 384 152 0 chr11 49646594 49646745 -101136808 - L2 LINE L2 -3 3269 3096 1913 108 35 10 chr11 49646770 49647077 -101136476 + AluSx SINE Alu 1 312 0 208 319 14 14 chr11 49647077 49647146 -101136407 - MIR SINE MIR -5 257 189 201 291 36 0 chr11 49648661 49648716 -101134837 - MIR SINE MIR -130 78 22 433 317 0 54 chr11 49648842 49648928 -101134625 + MER117 DNA MER1_type 2 76 -121 2151 108 3 3 chr11 49648928 49649224 -101134329 + AluSx SINE Alu 1 296 -16 433 317 0 54 chr11 49649224 49649304 -101134249 + MER117 DNA MER1_type 76 159 -38 311 286 152 28 chr11 49649346 49649524 -101134029 + MIR SINE MIR 1 200 -62 324 391 93 13 chr11 49650290 49650515 -101133038 + MIR SINE MIR 20 262 0 195 338 0 0 chr11 49650519 49650587 -101132966 - MIR SINE MIR -74 134 67 2131 118 0 3 chr11 49650589 49650886 -101132667 + AluSx SINE Alu 1 296 -16 707 244 95 45 chr11 49650974 49651195 -101132358 - MIR SINE MIR -25 237 6 776 156 31 0 chr11 49652542 49652670 -101130883 - FLAM_C SINE Alu -1 132 1 306 293 136 41 chr11 49652672 49652819 -101130734 - HAL1 LINE L1 -2337 170 10 824 226 7 0 chr11 49652859 49653005 -101130548 - FRAM SINE Alu -32 144 1 227 268 28 28 chr11 49653163 49653234 -101130319 - MIR SINE MIR -17 245 175 440 310 178 0 chr11 49653276 49653346 -101130207 + MIR SINE MIR 16 72 -190 2270 239 90 24 chr11 49653346 49653563 -101129990 + MLT1E1 LTR MaLR 1 202 -452 2067 130 0 10 chr11 49653563 49653871 -101129682 + AluSx SINE Alu 1 305 -7 2270 239 90 24 chr11 49653871 49654267 -101129286 + MLT1E1 LTR MaLR 202 654 0 440 310 178 0 chr11 49654267 49654393 -101129160 + MIR SINE MIR 72 247 -15 1911 123 43 7 chr11 49654424 49654725 -101128828 + AluSx SINE Alu 1 312 0 2099 120 0 13 chr11 49655003 49655302 -101128251 - AluSg SINE Alu -15 295 1 940 171 0 29 chr11 49655331 49655501 -101128052 + FRAM SINE Alu 1 40 0 923 118 0 22 chr11 49655584 49655720 -101127833 + FLAM_C SINE Alu 1 133 0 2015 139 3 0 chr11 49656102 49656397 -101127156 - AluSx SINE Alu -14 298 3 930 179 0 0 chr11 49656425 49656576 -101126977 - AluJb SINE Alu -17 295 145 353 286 21 7 chr11 49656697 49656837 -101126716 - L2 LINE L2 -213 3059 2918 2186 112 6 6 chr11 49657002 49657314 -101126239 + AluSx SINE Alu 1 312 0 396 139 0 0 chr11 49657319 49657398 -101126155 + (GGGA)n Simple_repeat Simple_repeat 4 82 0 510 347 181 4 chr11 49657581 49658068 -101125485 - L2 LINE L2 -744 2570 1998 732 188 0 23 chr11 49658088 49658221 -101125332 + AluJb SINE Alu 163 292 -20 2148 101 0 41 chr11 49658242 49658558 -101124995 + AluSg SINE Alu 1 303 -7 219 337 151 0 chr11 49658928 49659014 -101124539 - L2 LINE L2 0 3272 3174 2149 112 3 10 chr11 49659036 49659170 -101124383 + AluSx SINE Alu 1 134 -178 2278 92 7 0 chr11 49659170 49659465 -101124088 + AluSc SINE Alu 1 297 -12 2149 112 3 10 chr11 49659465 49659642 -101123911 + AluSx SINE Alu 134 310 -2 1629 151 0 4 chr11 49659675 49659926 -101123627 + AluSq SINE Alu 1 250 -63 941 106 0 8 chr11 49660034 49660166 -101123387 - AluSq/x SINE Alu -179 133 3 520 285 113 36 chr11 49660177 49660398 -101123155 - MIR SINE MIR -12 250 13 461 311 97 5 chr11 49661071 49661267 -101122286 + MIR SINE MIR 49 262 0 622 350 5 5 chr11 49661947 49662144 -101121409 + MIR SINE MIR 2 198 -64 333 341 6 23 chr11 49662186 49662362 -101121191 - L2 LINE L2 -183 3089 2917 183 353 78 60 chr11 49662426 49662658 -101120895 - L2 LINE L2 -94 3178 2943 21 0 0 0 chr11 49663770 49663791 -101119762 + GC_rich Low_complexity Low_complexity 1 21 0 190 261 0 0 chr11 49664317 49664363 -101119190 - L2 LINE L2 -6 3266 3221 459 263 34 0 chr11 49665636 49665754 -101117799 + MIR SINE MIR 29 150 -58 2096 106 10 0 chr11 49665803 49666096 -101117457 + AluSx SINE Alu 1 296 -16 291 114 0 0 chr11 49666186 49666230 -101117323 + (CA)n Simple_repeat Simple_repeat 1 44 0 213 309 82 27 chr11 49667413 49667523 -101116030 - MIR SINE MIR -143 119 4 220 222 25 12 chr11 49670055 49670136 -101113417 + (CGGGG)n Simple_repeat Simple_repeat 2 83 0 788 164 0 16 chr11 49672127 49672255 -101111298 - FLAM_C SINE Alu -17 126 1 306 301 83 30 chr11 49672259 49672392 -101111161 - MIR SINE MIR -116 146 7 * 417 312 58 12 chr11 49672380 49672553 -101111000 + MER5A DNA MER1_type 7 187 -2 273 294 63 7 chr11 49673131 49673274 -101110279 + MER117 DNA MER1_type 44 194 -3 358 276 73 16 chr11 49675679 49675802 -101107751 - MIR SINE MIR -54 208 79 1698 173 0 30 chr11 49676754 49677055 -101106498 - AluJo SINE Alu -20 292 1 305 320 142 7 chr11 49677306 49677646 -101105907 - L1MC4a LINE L1 -206 5964 5551 2485 55 7 0 chr11 49677659 49677967 -101105586 - AluY SINE Alu -1 310 1 384 291 2 43 chr11 49678025 49678186 -101105367 - MIR SINE MIR -62 146 41 2319 83 7 0 chr11 49678302 49678603 -101104950 - AluSp SINE Alu -10 303 1 184 405 36 0 chr11 49679034 49679118 -101104435 - L2 LINE L2 -99 3173 3087 678 249 46 60 chr11 49679242 49679459 -101104094 + MIR SINE MIR 13 226 -36 560 207 140 11 chr11 49680589 49680768 -101102785 + Charlie1a DNA MER1_type 1 202 -1253 764 241 94 11 chr11 49680794 49681059 -101102494 + Charlie1a DNA MER1_type 275 561 -894 1265 171 84 7 chr11 49681161 49681470 -101102083 + Charlie1a DNA MER1_type 1095 1427 -28 445 219 0 10 chr11 49681464 49681560 -101101993 + MER21B LTR ERV1 320 414 -449 * 2317 91 0 0 chr11 49681577 49681874 -101101679 + AluSg SINE Alu 1 297 -13 183 299 93 28 chr11 49682024 49682131 -101101422 + MIR SINE MIR 37 150 -58 391 349 86 23 chr11 49683596 49683771 -101099782 - MIR SINE MIR -25 237 52 187 293 49 12 chr11 49684417 49684499 -101099054 - MIR3 SINE MIR -43 165 81 687 292 93 0 chr11 49684944 49685160 -101098393 + MIR SINE MIR 27 262 0 485 319 88 9 chr11 49685238 49685454 -101098099 + MIR SINE MIR 22 254 -8 333 160 27 27 chr11 49689269 49689344 -101094209 + MIR SINE MIR 16 90 -172 276 286 39 0 chr11 49689329 49689406 -101094147 + L2 LINE L2 3234 3313 0 * 1948 72 116 14 chr11 49689996 49690273 -101093280 + AluSg SINE Alu 1 305 -5 24 0 0 0 chr11 49691842 49691866 -101091687 + AT_rich Low_complexity Low_complexity 1 24 0 2080 120 3 3 chr11 49691873 49692173 -101091380 + AluSq SINE Alu 1 300 -13 667 139 35 26 chr11 49692183 49692298 -101091255 + FLAM_A SINE Alu 1 116 -17 366 291 79 0 chr11 49694211 49694338 -101089215 + MIR SINE MIR 42 178 -84 1430 89 0 0 chr11 49694348 49694539 -101089014 - AluSg/x SINE Alu -1 311 121 2185 119 7 0 chr11 49694560 49694870 -101088683 - AluSx SINE Alu 0 312 1 293 246 0 0 chr11 49694882 49694943 -101088610 - L2 LINE L2 -5 3267 3207 245 237 111 0 chr11 49696708 49696822 -101086731 + MIR SINE MIR 59 181 -56 206 318 16 0 chr11 49698313 49698376 -101085177 + L2 LINE L2 2191 2254 -1060 790 281 147 20 chr11 49698754 49699196 -101084357 + L2 LINE L2 2815 3312 -1 25 51 0 0 chr11 49701791 49701830 -101081723 + GC_rich Low_complexity Low_complexity 1 39 0 193 85 0 64 chr11 49703042 49703089 -101080464 + (CGGGGG)n Simple_repeat Simple_repeat 2 45 0 25 51 0 0 chr11 49703191 49703230 -101080323 + GC_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr11 49703264 49703300 -101080253 + GC_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 49704038 49704059 -101079494 + GC_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr11 49704281 49704310 -101079243 + GC_rich Low_complexity Low_complexity 1 29 0 453 331 174 13 chr11 49708224 49708608 -101074945 - L2 LINE L2 0 3272 2827 682 154 81 0 chr11 49708803 49708926 -101074627 - FLAM_A SINE Alu 0 133 1 614 173 24 16 chr11 49708933 49709060 -101074493 - MIR SINE MIR -56 206 79 228 315 71 31 chr11 49709737 49709864 -101073689 + MIR SINE MIR 19 150 -58 228 302 94 10 chr11 49710043 49710139 -101073414 - MIR3 SINE MIR -39 169 66 663 309 12 52 chr11 49710404 49710653 -101072900 - MIR SINE MIR -1 261 23 210 345 9 26 chr11 49711392 49711505 -101072048 + (CGTG)n Simple_repeat Simple_repeat 4 114 0 26 30 0 0 chr11 49713078 49713111 -101070442 + GC_rich Low_complexity Low_complexity 1 33 0 225 274 11 11 chr11 49713150 49713245 -101070308 + (CGGG)n Simple_repeat Simple_repeat 1 95 0 31 58 0 0 chr11 49713346 49713398 -101070155 + GC_rich Low_complexity Low_complexity 1 52 0 24 0 0 0 chr11 49713529 49713553 -101070000 + GC_rich Low_complexity Low_complexity 1 24 0 277 307 79 26 chr11 49715466 49715580 -101067973 + MIR SINE MIR 22 141 -67 1955 131 20 10 chr11 49715824 49716104 -101067449 + AluSx SINE Alu 1 286 -26 237 53 26 0 chr11 49716104 49716142 -101067411 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1955 131 20 10 chr11 49716142 49716158 -101067395 + AluSx SINE Alu 286 300 -12 243 260 42 21 chr11 49716270 49716390 -101067163 + MIR SINE MIR 15 187 -75 1265 81 6 6 chr11 49716581 49716755 -101066798 + AluSp SINE Alu 1 174 -139 418 277 36 9 chr11 49717227 49717339 -101066214 - MIR3 SINE MIR -22 186 72 1929 86 63 7 chr11 49717616 49717885 -101065668 - AluSx SINE Alu -28 284 1 211 333 14 14 chr11 49720119 49720191 -101063362 - MIR3 SINE MIR -23 185 114 1939 107 30 0 chr11 49720526 49720797 -101062756 - AluY SINE Alu -32 279 1 2198 101 0 0 chr11 49720799 49721095 -101062458 - AluSx SINE Alu -16 296 1 2132 114 3 0 chr11 49721098 49721395 -101062158 - AluSq SINE Alu -15 298 1 2106 96 10 3 chr11 49721395 49721686 -101061867 - AluSq SINE Alu -20 293 1 299 240 20 25 chr11 49721917 49721998 -101061555 + MIR SINE MIR 34 112 -109 1805 150 19 3 chr11 49722504 49722811 -101060742 - AluJb SINE Alu 0 312 1 1924 125 18 0 chr11 49723278 49723558 -101059995 - AluSg SINE Alu -25 285 1 2161 95 0 14 chr11 49724383 49724679 -101058874 - AluSg SINE Alu -9 301 10 224 253 89 137 chr11 49724691 49724837 -101058716 + L2 LINE L2 3133 3271 -1 1816 115 57 20 chr11 49725942 49726238 -101057315 + AluJb SINE Alu 1 307 -5 555 309 97 32 chr11 49727161 49727439 -101056114 + L2 LINE L2 2957 3252 -20 1333 144 8 37 chr11 49727461 49727704 -101055849 + AluJo SINE Alu 1 236 -76 251 136 0 0 chr11 49728312 49728356 -101055197 + L1MB7 LINE L1 5782 5825 -349 929 160 0 41 chr11 49728356 49728525 -101055028 + FRAM SINE Alu 1 161 -15 1314 140 109 101 chr11 49728526 49728883 -101054670 + L1MB7 LINE L1 5823 6182 -2 636 219 57 46 chr11 49729394 49729590 -101053963 - HAL1 LINE L1 0 2507 2315 2149 119 7 0 chr11 49729590 49729900 -101053653 - AluSx SINE Alu 0 312 1 636 219 57 46 chr11 49729900 49730057 -101053496 - HAL1 LINE L1 -192 2315 2121 1947 113 43 0 chr11 49730358 49730640 -101052913 + AluSx SINE Alu 1 294 -18 3212 153 41 38 chr11 49731003 49731279 -101052274 - L1MC1 LINE L1 -30 6303 6029 1900 153 0 10 chr11 49731279 49731586 -101051967 + AluJb SINE Alu 1 304 -8 3212 153 41 38 chr11 49731586 49731945 -101051608 - L1MC1 LINE L1 -304 6029 5666 1640 100 13 0 chr11 49731945 49732176 -101051377 - AluSg/x SINE Alu -10 300 67 1919 136 34 0 chr11 49732343 49732638 -101050915 - AluSx SINE Alu -4 308 4 1021 99 0 0 chr11 49733226 49733367 -101050186 - AluSg/x SINE Alu -4 308 168 406 207 0 0 chr11 49733863 49733945 -101049608 - L1P5 LINE L1 -594 5562 5481 2215 72 10 7 chr11 49733945 49734236 -101049317 - AluY SINE Alu -17 294 3 2274 85 0 0 chr11 49734238 49734531 -101049022 - AluSq SINE Alu -20 293 1 480 184 0 11 chr11 49734690 49734777 -101048776 - Charlie1 DNA MER1_type -2618 143 58 2458 44 0 31 chr11 49734956 49735277 -101048276 - AluY SINE Alu 0 311 1 441 291 6 6 chr11 49736382 49736564 -101046989 - L1M4 LINE L1 -3251 2895 2714 567 0 0 0 chr11 49736968 49737031 -101046522 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 1332 187 30 0 chr11 49737037 49737176 -101046377 - AluJb SINE Alu -37 275 142 1972 142 0 10 chr11 49737176 49737487 -101046066 - AluSx SINE Alu -4 308 1 1332 187 30 0 chr11 49737487 49737614 -101045939 - AluJb SINE Alu -170 142 1 350 204 299 12 chr11 49737883 49738050 -101045503 - Charlie8 DNA MER1_type -2174 243 29 3094 134 52 28 chr11 49738839 49739113 -101044440 + L1MB1 LINE L1 5572 5838 -330 2083 116 7 0 chr11 49739113 49739423 -101044130 - AluSx SINE Alu 0 312 1 3094 134 52 28 chr11 49739423 49739724 -101043829 + L1MB1 LINE L1 5838 6161 -7 2191 194 63 31 chr11 49740557 49740914 -101042639 - MER74B LTR ERVL -5 617 238 2184 98 3 0 chr11 49740914 49741221 -101042332 - AluSc SINE Alu -1 308 1 2191 194 63 31 chr11 49741221 49741374 -101042179 - MER74B LTR ERVL -384 238 91 2068 116 0 0 chr11 49742337 49742669 -101040884 + AluSx SINE Alu 1 332 0 1758 174 0 0 chr11 49742689 49742993 -101040560 + AluJb SINE Alu 1 304 -8 1228 239 46 0 chr11 49743387 49743815 -101039738 + L1MEc LINE L1 2103 2505 -3710 625 250 96 24 chr11 49744351 49744559 -101038994 + MIR SINE MIR 21 243 -19 25 0 0 0 chr11 49744862 49744887 -101038666 + AT_rich Low_complexity Low_complexity 1 25 0 358 292 71 18 chr11 49745215 49745328 -101038225 + L2 LINE L2 3147 3265 -7 788 183 0 22 chr11 49745473 49745610 -101037943 - AluJo SINE Alu -165 147 14 571 200 262 0 chr11 49746555 49746700 -101036853 + MER5A DNA MER1_type 7 189 0 911 192 19 112 chr11 49749035 49749295 -101034258 - MER106A DNA MER1_type 0 236 1 1707 177 0 3 chr11 49750512 49750812 -101032741 + AluJo SINE Alu 1 299 -13 1719 109 36 76 chr11 49750814 49750959 -101032594 + AluSx SINE Alu 1 129 -183 2110 107 0 20 chr11 49750959 49751259 -101032294 + AluSx SINE Alu 3 296 -16 1719 109 36 76 chr11 49751259 49751417 -101032136 + AluSx SINE Alu 129 292 -20 1917 120 4 4 chr11 49751419 49751694 -101031859 + AluSp SINE Alu 1 275 -38 210 44 44 22 chr11 49751703 49751748 -101031805 + (TAAAA)n Simple_repeat Simple_repeat 2 47 0 478 250 50 66 chr11 49751763 49752003 -101031550 + MLT1F LTR MaLR 5 244 -311 232 167 0 0 chr11 49752011 49752059 -101031494 + A-rich Low_complexity Low_complexity 6 53 0 370 218 49 92 chr11 49752164 49752306 -101031247 + MLT1F LTR MaLR 401 536 -13 1145 156 0 0 chr11 49752693 49752872 -101030681 + AluJo SINE Alu 1 179 -133 197 195 0 24 chr11 49753261 49753302 -101030251 + MIR3 SINE MIR 131 170 -38 234 0 0 0 chr11 49754812 49754838 -101028715 + (TG)n Simple_repeat Simple_repeat 2 27 0 368 274 207 28 chr11 49755201 49755380 -101028173 - MIR SINE MIR -24 238 28 836 241 38 9 chr11 49755453 49755665 -101027888 - MER20 DNA MER1_type -1 218 1 2104 95 3 0 chr11 49755725 49756031 -101027522 + AluSq SINE Alu 1 307 0 1832 96 103 0 chr11 49758034 49758305 -101025248 - AluSx SINE Alu -13 299 1 263 333 12 0 chr11 49758305 49758386 -101025167 - HAL1 LINE L1 -2425 82 1 219 319 42 0 chr11 49758540 49758612 -101024941 + L2 LINE L2 3239 3313 0 728 186 0 21 chr11 49758745 49758885 -101024668 + FLAM_C SINE Alu 7 143 0 338 217 29 0 chr11 49758903 49758976 -101024577 - FRAM SINE Alu -70 96 33 2267 68 0 52 chr11 49759001 49759326 -101024227 + AluY SINE Alu 1 308 -3 1959 134 3 0 chr11 49759346 49759644 -101023909 + AluSq SINE Alu 1 299 -14 2191 81 3 0 chr11 49760231 49760526 -101023027 - AluY SINE Alu -13 298 3 235 224 30 60 chr11 49760579 49760646 -101022907 + L2 LINE L2 3245 3309 -4 21 0 0 0 chr11 49760879 49760900 -101022653 + AT_rich Low_complexity Low_complexity 1 21 0 2147 91 3 0 chr11 49760979 49761266 -101022287 - AluSx SINE Alu -24 288 1 1371 69 0 0 chr11 49763924 49764099 -101019454 - AluSp SINE Alu 0 313 139 1891 162 3 0 chr11 49764200 49764503 -101019050 + AluJb SINE Alu 2 305 -7 1699 79 0 0 chr11 49764761 49764977 -101018576 + AluSg/x SINE Alu 65 280 -32 416 254 119 54 chr11 49764985 49765107 -101018446 + MLT1H LTR MaLR 236 349 -200 1433 217 89 52 chr11 49765107 49765590 -101017963 - MLT1D LTR MaLR -2 503 3 416 254 119 54 chr11 49765590 49765762 -101017791 + MLT1H LTR MaLR 349 549 0 1797 106 91 0 chr11 49766670 49766945 -101016608 - AluSp SINE Alu -13 300 1 855 183 0 18 chr11 49767310 49767479 -101016074 + FRAM SINE Alu 2 167 -9 1989 132 0 16 chr11 49768147 49768451 -101015102 - AluSx SINE Alu -13 299 1 207 314 0 14 chr11 49769494 49769564 -101013989 + CT-rich Low_complexity Low_complexity 2 70 0 396 138 75 12 chr11 49770641 49770721 -101012832 + L1MB3 LINE L1 5900 5984 -199 243 243 0 100 chr11 49770853 49770866 -101012687 + L2 LINE L2 3210 3223 -49 2127 99 0 7 chr11 49770866 49771169 -101012384 + AluSq SINE Alu 1 301 -12 243 243 0 100 chr11 49771169 49771225 -101012328 + L2 LINE L2 3223 3272 0 1781 161 0 3 chr11 49771337 49771629 -101011924 - AluJb SINE Alu -21 291 1 481 294 97 78 chr11 49772831 49773100 -101010453 - L2 LINE L2 0 3272 2999 314 251 179 65 chr11 49774792 49775057 -101008496 + L1ME3 LINE L1 5615 5929 -233 2300 71 0 7 chr11 49775065 49775361 -101008192 - AluY SINE Alu -16 295 2 739 194 0 0 chr11 49775544 49775673 -101007880 + FLAM_C SINE Alu 1 129 -4 1586 208 0 0 chr11 49775700 49775993 -101007560 + AluJb SINE Alu 1 293 -19 297 308 170 14 chr11 49777128 49777417 -101006136 + L2 LINE L2 2644 2977 -337 2110 112 0 7 chr11 49777499 49777793 -101005760 - AluSx SINE Alu -20 292 1 22 35 0 0 chr11 49779321 49779350 -101004203 + AT_rich Low_complexity Low_complexity 1 29 0 854 141 0 0 chr11 49779451 49779579 -101003974 + FLAM_C SINE Alu 4 131 -2 2122 104 0 7 chr11 49779652 49779950 -101003603 + AluSx SINE Alu 1 296 -16 2037 85 0 78 chr11 49779952 49780293 -101003260 + AluSg SINE Alu 1 310 0 2103 74 28 0 chr11 49782262 49782546 -101001007 - AluSg SINE Alu -14 296 5 763 75 0 19 chr11 49783873 49783979 -100999574 + AluSc SINE Alu 2 105 -204 1268 214 62 14 chr11 49784136 49784412 -100999141 + AluJo SINE Alu 2 290 -12 2167 109 3 0 chr11 49784425 49784728 -100998825 + AluSg SINE Alu 1 304 -6 369 0 0 0 chr11 49784881 49784922 -100998631 + (TG)n Simple_repeat Simple_repeat 2 42 0 2293 73 10 0 chr11 49785130 49785430 -100998123 + AluSq SINE Alu 1 303 -10 1461 78 0 5 chr11 49785435 49785627 -100997926 + AluY SINE Alu 1 191 -120 195 100 0 0 chr11 49785636 49785666 -100997887 + (A)n Simple_repeat Simple_repeat 1 30 0 301 242 189 0 chr11 49785938 49786033 -100997520 + L2 LINE L2 3196 3308 -5 198 0 0 0 chr11 49786887 49786909 -100996644 + (CAG)n Simple_repeat Simple_repeat 1 22 0 934 142 62 17 chr11 49787075 49787251 -100996302 - MER5A DNA MER1_type -5 184 1 2268 85 0 0 chr11 49787297 49787602 -100995951 + AluSx SINE Alu 1 305 -7 222 241 17 17 chr11 49787733 49787791 -100995762 + GA-rich Low_complexity Low_complexity 6 63 0 201 74 0 0 chr11 49788144 49788171 -100995382 + (TTC)n Simple_repeat Simple_repeat 2 28 0 374 247 89 62 chr11 49789814 49789960 -100993593 - MER5A DNA MER1_type -39 150 1 27 0 0 0 chr11 49791449 49791476 -100992077 + AT_rich Low_complexity Low_complexity 1 27 0 428 357 83 0 chr11 49791486 49791643 -100991910 - L2 LINE L2 -1 3271 3102 267 279 35 12 chr11 49793171 49793257 -100990296 + MIR SINE MIR 160 247 -15 2317 93 3 0 chr11 49793257 49793569 -100989984 + AluSp SINE Alu 1 313 0 207 0 0 0 chr11 49793821 49793844 -100989709 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 482 199 145 15 chr11 49793882 49794013 -100989540 - L1ME LINE L1 -409 5712 5565 264 329 44 22 chr11 49794865 49795002 -100988551 + L3 LINE CR1 382 521 -1056 1301 101 0 0 chr11 49795007 49795175 -100988378 - AluSx SINE Alu -144 168 1 199 231 0 0 chr11 49795993 49796032 -100987521 - L2 LINE L2 -16 3256 3218 2206 107 0 0 chr11 49796918 49797228 -100986325 + AluY SINE Alu 1 310 -1 341 315 129 4 chr11 49799018 49799250 -100984303 - MIR SINE MIR 0 262 2 506 178 136 25 chr11 49800238 49800356 -100983197 + FLAM_A SINE Alu 2 132 -1 1891 132 6 31 chr11 49800358 49800676 -100982877 + AluSq SINE Alu 1 310 -3 21 0 0 0 chr11 49801068 49801089 -100982464 + AT_rich Low_complexity Low_complexity 1 21 0 2011 133 3 0 chr11 49801097 49801422 -100982131 + AluSx SINE Alu 1 326 0 277 77 0 58 chr11 49801429 49801481 -100982072 + L1MB2 LINE L1 6121 6169 -2 1278 88 0 0 chr11 49803946 49804106 -100979447 - AluSx SINE Alu -152 160 1 975 93 0 43 chr11 49804124 49804263 -100979290 - FLAM_C SINE Alu 0 133 1 1004 144 150 0 chr11 49804466 49804646 -100978907 + MER2 DNA MER2_type 1 207 -138 1621 148 4 25 chr11 49804648 49804925 -100978628 - AluJb SINE Alu -39 273 3 2246 112 0 0 chr11 49805816 49806128 -100977425 - AluSq SINE Alu -1 312 1 2088 111 3 7 chr11 49809390 49809688 -100973865 - AluSc SINE Alu -12 297 1 2354 81 0 0 chr11 49811182 49811492 -100972061 - AluY SINE Alu 0 311 2 832 87 0 0 chr11 49811493 49811608 -100971945 - AluY SINE Alu -5 306 192 1826 135 81 0 chr11 49811708 49812041 -100971512 + MER6 DNA MER2_type 472 831 -34 809 150 59 33 chr11 49812197 49812350 -100971203 - AluSc SINE Alu 0 309 153 2353 81 0 3 chr11 49812902 49813209 -100970344 + AluY SINE Alu 1 306 -5 3227 158 64 7 chr11 49813210 49813773 -100969780 - Tigger1 DNA MER2_type -1823 595 1 828 165 0 8 chr11 49813987 49814120 -100969433 - FLAM_C SINE Alu -11 132 1 270 367 0 0 chr11 49815790 49815918 -100967635 + G-rich Low_complexity Low_complexity 3 130 0 2152 91 0 38 chr11 49817005 49817323 -100966230 + AluY SINE Alu 1 306 -5 2419 57 0 0 chr11 49817323 49817622 -100965931 + AluY SINE Alu 1 299 -12 231 247 99 12 chr11 49818874 49818955 -100964598 - MIR3 SINE MIR -15 193 106 520 287 76 14 chr11 49819555 49819830 -100963723 + L1MC4a LINE L1 5615 5906 -1902 2176 101 0 3 chr11 49820377 49820673 -100962880 - AluSx SINE Alu -17 295 1 30 45 0 0 chr11 49821822 49821866 -100961687 + AT_rich Low_complexity Low_complexity 1 44 0 440 300 94 34 chr11 49821954 49822187 -100961366 - MIR SINE MIR -14 248 2 278 221 74 53 chr11 49822297 49822392 -100961161 + MIR SINE MIR 154 250 -12 2102 117 0 0 chr11 49822399 49822698 -100960855 - AluSx SINE Alu -12 300 2 185 267 44 0 chr11 49822892 49822937 -100960616 - L2 LINE L2 -9 3263 3217 313 284 28 57 chr11 49823367 49823508 -100960045 + L2 LINE L2 3175 3311 -2 462 245 80 24 chr11 49927564 49927764 -100855789 - L1MC4a LINE L1 -170 5951 5728 983 163 5 43 chr11 49927765 49927949 -100855604 - AluJb SINE Alu -14 298 122 2281 110 3 3 chr11 49927975 49928284 -100855269 + AluSx SINE Alu 1 309 -3 1732 98 0 30 chr11 49928285 49928521 -100855032 + AluSq SINE Alu 1 229 -84 1525 98 5 19 chr11 49928621 49928836 -100854717 + AluSg/x SINE Alu 93 304 -8 571 233 96 65 chr11 49928871 49929163 -100854390 + L2 LINE L2 3012 3312 -1 1797 165 3 10 chr11 49929221 49929530 -100854023 + AluJb SINE Alu 1 307 -5 500 228 23 58 chr11 49930216 49930280 -100853273 - MIR SINE MIR -54 208 143 577 103 0 0 chr11 49930280 49930358 -100853195 + MADE1 DNA Mariner 3 80 0 500 228 23 58 chr11 49930358 49930464 -100853089 - MIR SINE MIR -119 143 44 187 278 97 0 chr11 49930894 49930966 -100852587 - MIR SINE MIR -164 98 20 196 273 18 18 chr11 49930979 49931034 -100852519 + MER5A DNA MER1_type 122 176 -13 2832 22 3 0 chr11 49931262 49931574 -100851979 + AluYb8 SINE Alu 1 313 -5 2095 112 25 6 chr11 49931674 49931996 -100851557 - L1MC2 LINE L1 -238 6106 5779 1947 174 3 0 chr11 49932008 49932319 -100851234 - AluJb SINE Alu 0 312 1 2469 72 7 0 chr11 49932325 49932631 -100850922 - AluSp SINE Alu -5 308 1 34 0 0 0 chr11 49932678 49932712 -100850841 + AT_rich Low_complexity Low_complexity 1 34 0 738 190 0 0 chr11 49932750 49932871 -100850682 + FLAM_C SINE Alu 1 121 -12 429 20 0 0 chr11 49932874 49932924 -100850629 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 2056 143 0 6 chr11 49933101 49933415 -100850138 - AluSx SINE Alu 0 312 1 1259 241 133 27 chr11 49933428 49933872 -100849681 - L1MC4a LINE L1 -1965 5843 5353 240 167 0 0 chr11 49933878 49933926 -100849627 + (TA)n Simple_repeat Simple_repeat 1 48 0 533 272 43 37 chr11 49934957 49935173 -100848380 - MIR SINE MIR -10 252 36 244 220 20 0 chr11 49935275 49935325 -100848228 + (CA)n Simple_repeat Simple_repeat 1 51 0 622 50 0 0 chr11 49935325 49935425 -100848128 - AluY SINE Alu 0 302 203 1344 96 51 0 chr11 49935551 49935748 -100847805 + AluY SINE Alu 105 311 0 1486 142 0 45 chr11 49935943 49936190 -100847363 - AluJo SINE Alu -19 293 58 462 237 227 16 chr11 49936243 49936564 -100846989 - L1ME4a LINE L1 -3 6118 5730 779 135 0 0 chr11 49936564 49936675 -100846878 - AluJb SINE Alu -12 300 190 922 159 0 0 chr11 49936675 49936813 -100846740 - AluSg/x SINE Alu -90 220 83 215 291 128 27 chr11 49936939 49937087 -100846466 - MIR SINE MIR -27 235 73 525 56 0 0 chr11 49937479 49937551 -100846002 + Alu SINE Alu 239 310 -2 5379 143 34 34 chr11 49937580 49937889 -100845664 + L1PA16 LINE L1 5020 5328 -838 2039 117 33 0 chr11 49937889 49938188 -100845365 + AluSx SINE Alu 1 308 0 5379 143 34 34 chr11 49938188 49938871 -100844682 + L1PA16 LINE L1 5328 6014 -152 2249 148 40 66 chr11 49938871 49939372 -100844181 + LTR22B LTR ERVK 1 488 -4 5379 143 34 34 chr11 49939372 49939523 -100844030 + L1PA16 LINE L1 6014 6164 -2 596 221 39 74 chr11 49939523 49939781 -100843772 + L2 LINE L2 3065 3313 0 275 368 6 12 chr11 49940171 49940334 -100843219 + L2 LINE L2 2228 2389 -925 2167 107 10 3 chr11 49940495 49940785 -100842768 + AluSg SINE Alu 1 292 -18 687 274 75 9 chr11 49940798 49941024 -100842529 - MIR SINE MIR -15 247 7 1326 109 90 0 chr11 49941070 49941281 -100842272 + MER30 DNA MER1_type 1 230 0 547 200 0 20 chr11 49942367 49942467 -100841086 + FLAM_A SINE Alu 26 123 -19 2205 136 0 0 chr11 49942474 49942775 -100840778 + AluSx SINE Alu 1 301 -11 980 294 45 38 chr11 49942882 49943300 -100840253 + HAL1 LINE L1 146 566 -1941 2358 158 61 33 chr11 49943575 49944004 -100839549 + MLT2B2 LTR ERVL 13 453 -62 2043 104 44 120 chr11 49944009 49944030 -100839523 - Tigger2a DNA MER2_type -2308 400 379 767 187 0 8 chr11 49944030 49944164 -100839389 + FLAM_C SINE Alu 1 133 0 2043 104 44 120 chr11 49944164 49944342 -100839211 - Tigger2a DNA MER2_type -2329 379 249 673 183 8 8 chr11 49944342 49944462 -100839091 + FLAM_A SINE Alu 1 120 -13 2043 104 44 120 chr11 49944462 49944694 -100838859 - Tigger2a DNA MER2_type -2459 249 1 331 125 0 94 chr11 49944707 49944771 -100838782 + MLT2B2 LTR ERVL 463 520 0 586 228 118 0 chr11 49944786 49945148 -100838405 + HAL1 LINE L1 1098 1573 -934 274 172 148 41 chr11 49945580 49945702 -100837851 - L1ME4a LINE L1 0 6121 5987 329 303 0 84 chr11 49946208 49946363 -100837190 + MIR3 SINE MIR 9 150 -58 2191 65 0 0 chr11 49946375 49946638 -100836915 - AluSg SINE Alu -2 308 46 1986 68 0 72 chr11 49947519 49947811 -100835742 + AluSx SINE Alu 3 273 -39 2292 112 0 0 chr11 49948070 49948366 -100835187 - AluSx SINE Alu -16 296 1 314 244 143 42 chr11 49948377 49948496 -100835057 - MIR3 SINE MIR -67 141 11 878 145 56 137 chr11 49948595 49948670 -100834883 - MER20 DNA MER1_type 0 219 139 2272 81 0 3 chr11 49948670 49948954 -100834599 - AluSq SINE Alu -13 300 18 878 145 56 137 chr11 49948954 49949112 -100834441 - MER20 DNA MER1_type -80 139 5 1908 158 0 22 chr11 49949538 49949854 -100833699 - AluJb SINE Alu -3 309 1 423 83 0 0 chr11 49950004 49950064 -100833489 + (TCCA)n Simple_repeat Simple_repeat 4 63 0 1871 169 3 25 chr11 49951010 49951329 -100832224 - AluJo SINE Alu 0 312 1 292 277 125 9 chr11 49952266 49952378 -100831175 - MIR SINE MIR -91 171 47 2012 131 0 30 chr11 49952621 49952926 -100830627 + AluSx SINE Alu 1 296 -16 1935 117 13 73 chr11 49952926 49953242 -100830311 + AluSx SINE Alu 1 297 -15 1865 135 51 0 chr11 49955231 49955505 -100828048 + AluSx SINE Alu 1 288 -24 695 94 0 40 chr11 49955513 49955662 -100827891 + SVA Other Other 610 752 -634 4658 169 26 31 chr11 49955876 49956144 -100827409 - L1MB7 LINE L1 -77 6107 5839 2284 78 34 3 chr11 49956144 49956437 -100827116 + AluSq SINE Alu 2 303 -10 4658 169 26 31 chr11 49956437 49957409 -100826144 - L1MB7 LINE L1 -345 5839 4863 2897 78 14 3 chr11 49957409 49957780 -100825773 - THE1C LTR MaLR 0 375 1 4658 169 26 31 chr11 49957780 49958318 -100825235 - L1MB7 LINE L1 -1321 4863 4324 1254 171 5 9 chr11 49958319 49958530 -100825023 + AluJb SINE Alu 85 294 -18 1640 214 21 51 chr11 49958530 49958960 -100824593 - L1MB7 LINE L1 -1837 4309 3893 1753 124 8 12 chr11 49959107 49959365 -100824188 + AluSx SINE Alu 42 298 -14 28 29 0 0 chr11 49959514 49959549 -100824004 + AT_rich Low_complexity Low_complexity 1 35 0 2528 58 0 0 chr11 49959854 49960149 -100823404 - AluY SINE Alu -16 295 1 481 159 57 0 chr11 49960211 49960299 -100823254 - Charlie1 DNA MER1_type -6 2755 2663 1838 149 0 3 chr11 49960301 49960589 -100822964 - LOR1a LTR ERV1 0 497 211 670 92 0 0 chr11 49960593 49960680 -100822873 - LOR1b LTR ERV1 -374 87 1 249 191 90 22 chr11 49960696 49960785 -100822768 - Charlie1 DNA MER1_type -102 2659 2565 2267 109 3 0 chr11 49960785 49961088 -100822465 - AluSx SINE Alu -8 304 1 2263 106 0 16 chr11 49961245 49961548 -100822005 - AluSx SINE Alu -14 298 1 2725 42 0 0 chr11 49961741 49962048 -100821505 - AluY SINE Alu -4 307 1 2251 99 0 52 chr11 49962178 49962502 -100821051 - AluSg SINE Alu -3 307 1 349 307 102 18 chr11 49962584 49962750 -100820803 - MIR SINE MIR -70 192 13 1941 145 42 0 chr11 49962871 49963160 -100820393 - AluJo SINE Alu -11 301 1 449 294 93 58 chr11 49963680 49964023 -100819530 - MLT1J1 LTR MaLR -49 397 43 404 290 117 39 chr11 49964637 49965072 -100818481 - L2 LINE L2 -1301 2013 1545 324 321 75 14 chr11 49965445 49965657 -100817896 - L2 LINE L2 -1856 1458 1234 2009 158 0 0 chr11 49965842 49966165 -100817388 + AluSx SINE Alu 1 312 0 266 261 39 62 chr11 49966263 49966393 -100817160 - HAL1 LINE L1 -27 2480 2354 226 100 0 0 chr11 49966938 49966978 -100816575 - Alu SINE Alu 0 308 269 1957 116 18 0 chr11 49967146 49967421 -100816132 + AluSx SINE Alu 1 280 -32 932 180 97 158 chr11 49968063 49968640 -100814913 - HAL1 LINE L1 -104 2403 1862 245 195 0 0 chr11 49968740 49968781 -100814772 + L1ME LINE L1 5715 5755 -409 388 183 11 0 chr11 49968910 49968988 -100814565 + L1M3 LINE L1 5537 5603 -577 266 242 15 15 chr11 49969587 49969653 -100813900 - MIR3 SINE MIR -132 76 11 27 29 0 0 chr11 49969996 49970030 -100813523 + AT_rich Low_complexity Low_complexity 1 34 0 971 171 43 0 chr11 49971674 49971885 -100811668 + AluJo SINE Alu 84 303 -9 287 392 108 8 chr11 49972689 49972809 -100810744 + L2 LINE L2 3128 3259 -13 1334 122 44 81 chr11 49972990 49973285 -100810268 + L1MB2 LINE L1 5887 6170 -1 1373 131 0 10 chr11 49973372 49973571 -100809982 + Tigger2a DNA MER2_type 1 197 -237 740 185 64 19 chr11 49973612 49973769 -100809784 + AluJb SINE Alu 110 273 -39 1313 136 89 0 chr11 49973769 49974004 -100809549 + Tigger2a DNA MER2_type 189 444 0 312 27 0 0 chr11 49974078 49974115 -100809438 + (TG)n Simple_repeat Simple_repeat 2 38 0 1851 211 42 34 chr11 49974146 49974391 -100809162 + MLT1D LTR MaLR 5 247 -258 2393 69 0 0 chr11 49974391 49974695 -100808858 + AluY SINE Alu 1 304 -7 1851 211 42 34 chr11 49974695 49974946 -100808607 + MLT1D LTR MaLR 247 505 0 2169 74 3 10 chr11 49975012 49975309 -100808244 + AluY SINE Alu 1 295 -16 32 75 0 0 chr11 49975434 49975501 -100808052 + AT_rich Low_complexity Low_complexity 1 67 0 1549 194 0 10 chr11 49975758 49976062 -100807491 - AluJb SINE Alu -11 301 1 1684 171 17 0 chr11 49976092 49976391 -100807162 - AluJb SINE Alu -8 304 1 210 286 0 0 chr11 49976707 49976763 -100806790 + MIR SINE MIR 28 83 -179 737 198 87 0 chr11 49976817 49976989 -100806564 - MIR SINE MIR -5 257 71 870 217 0 0 chr11 49977040 49977201 -100806352 + AluJb SINE Alu 135 295 -17 230 289 48 102 chr11 49977293 49977459 -100806094 - L2 LINE L2 -169 3144 2988 2234 68 7 0 chr11 49977714 49978007 -100805546 - AluY SINE Alu -16 295 1 265 100 40 0 chr11 49978067 49978117 -100805436 + (TTA)n Simple_repeat Simple_repeat 2 53 0 182 283 0 19 chr11 49979837 49979890 -100803663 + L2 LINE L2 3217 3268 -4 446 253 201 41 chr11 49979938 49980132 -100803421 - L2 LINE L2 -3 3310 3086 2375 56 0 7 chr11 49980158 49980464 -100803089 - AluY SINE Alu -7 304 1 236 319 58 36 chr11 49980772 49980910 -100802643 - LTR67 LTR ERVL -67 490 350 214 250 0 21 chr11 49981122 49981170 -100802383 + polypurine Low_complexity Low_complexity 2 48 0 2154 117 0 0 chr11 49981197 49981505 -100802048 - AluSx SINE Alu -4 308 1 665 263 110 70 chr11 49981940 49982385 -100801168 - LTR16B LTR ERVL 0 464 2 488 242 139 30 chr11 49982425 49982501 -100801052 - MIR SINE MIR -2 260 194 2153 113 0 0 chr11 49982501 49982802 -100800751 - AluSx SINE Alu -11 301 1 1610 151 14 18 chr11 49982802 49983087 -100800466 - AluJo SINE Alu -18 294 11 488 242 139 30 chr11 49983087 49983174 -100800379 - MIR SINE MIR -67 195 78 645 277 183 0 chr11 49983436 49983649 -100799904 + MIR SINE MIR 5 256 -6 634 221 67 127 chr11 49983932 49984185 -100799368 + MIR SINE MIR 20 257 -5 2287 96 0 0 chr11 49985198 49985500 -100798053 + AluSx SINE Alu 1 302 -10 1285 101 101 5 chr11 49986004 49986203 -100797350 + AluSg/x SINE Alu 85 302 -10 642 250 65 43 chr11 49986215 49986310 -100797243 - L2 LINE L2 -498 2816 2725 1624 158 25 62 chr11 49986310 49986632 -100796921 - AluJb SINE Alu -2 310 1 642 250 65 43 chr11 49986632 49986720 -100796833 - L2 LINE L2 -589 2725 2629 2302 92 0 0 chr11 49987032 49987336 -100796217 + AluSc SINE Alu 1 304 -5 473 286 107 122 chr11 49987485 49987870 -100795683 + L2 LINE L2 2894 3272 0 1496 110 37 123 chr11 49987957 49988283 -100795270 + AluSg SINE Alu 1 298 -12 210 37 0 0 chr11 49988286 49988313 -100795240 + (CAA)n Simple_repeat Simple_repeat 2 28 0 682 132 7 132 chr11 49988406 49988558 -100794995 - MER20 DNA MER1_type -4 215 83 968 205 12 0 chr11 49988564 49988730 -100794823 + FAM SINE Alu 1 168 -7 1986 140 0 7 chr11 49988730 49989063 -100794490 + AluSx SINE Alu 7 312 0 324 158 0 0 chr11 49989063 49989120 -100794433 + GA-rich Low_complexity Low_complexity 1 57 0 2202 64 20 17 chr11 49990097 49990395 -100793158 + AluSp SINE Alu 1 299 -14 1658 117 0 0 chr11 49991973 49992203 -100791350 - AluSx SINE Alu -29 283 54 813 211 0 0 chr11 49992457 49992613 -100790940 - FAM SINE Alu -14 171 16 2854 61 0 3 chr11 49992959 49993302 -100790251 + THE1A LTR MaLR 14 355 0 12337 81 6 2 chr11 49993302 49994877 -100788676 + THE1A-int LTR MaLR 1 1580 0 2783 71 6 0 chr11 49994877 49995230 -100788323 + THE1A LTR MaLR 1 355 0 277 307 74 81 chr11 49995257 49995462 -100788091 - L2 LINE L2 -52 3261 3015 1903 146 3 0 chr11 49995462 49995764 -100787789 - AluJb SINE Alu -9 303 1 277 307 74 81 chr11 49995764 49995905 -100787648 - L2 LINE L2 -298 3015 2874 750 171 0 16 chr11 49996040 49996169 -100787384 - FLAM_C SINE Alu -10 133 7 187 416 0 26 chr11 49996185 49996298 -100787255 - L2 LINE L2 -575 2739 2630 1622 155 3 74 chr11 49996451 49996761 -100786792 - AluJo SINE Alu -19 293 6 2371 80 0 0 chr11 49996773 49997073 -100786480 - AluSx SINE Alu -12 300 1 750 150 175 25 chr11 49997188 49997348 -100786205 - AluJb SINE Alu 0 312 129 389 325 51 0 chr11 49997451 49997568 -100785985 - L2 LINE L2 -4 3268 3146 2067 88 7 0 chr11 49997612 49997935 -100785618 + AluSx SINE Alu 1 325 0 1467 181 53 0 chr11 49998680 49998945 -100784608 + AluJo SINE Alu 1 279 -33 194 0 39 0 chr11 49998960 49998986 -100784567 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1991 145 0 0 chr11 49998987 49999290 -100784263 + AluSx SINE Alu 6 308 -4 2245 67 3 10 chr11 50000338 50000638 -100782915 - AluSc SINE Alu -11 298 1 551 96 0 0 chr11 50000760 50000833 -100782720 + MER5A DNA MER1_type 32 104 -85 1401 193 10 46 chr11 50000833 50001138 -100782415 + AluJo SINE Alu 1 294 -18 209 103 0 0 chr11 50001142 50001171 -100782382 + MER5A DNA MER1_type 89 117 -72 2233 81 0 23 chr11 50001195 50001368 -100782185 - AluSg SINE Alu -10 300 136 2476 52 0 3 chr11 50001368 50001675 -100781878 - AluY SINE Alu -5 306 1 2233 81 0 23 chr11 50001675 50001808 -100781745 - AluSg SINE Alu -174 136 1 457 202 36 0 chr11 50001827 50001911 -100781642 + MER5A DNA MER1_type 103 189 0 3648 100 12 8 chr11 50002404 50002913 -100780640 - MER9 LTR ERVK 0 511 1 296 293 71 0 chr11 50003035 50003134 -100780419 - L1ME4a LINE L1 -74 6047 5942 1878 151 0 16 chr11 50003243 50003560 -100779993 - AluJo SINE Alu 0 312 1 1723 169 36 0 chr11 50003624 50003925 -100779628 - AluJb SINE Alu 0 312 1 1214 184 85 97 chr11 50004774 50005048 -100778505 - L1MC4 LINE L1 0 8042 7773 1349 160 104 21 chr11 50005048 50005336 -100778217 - AluJo SINE Alu 0 312 1 1214 184 85 97 chr11 50005336 50005486 -100778067 - L1MC4 LINE L1 -269 7773 7623 1064 174 57 114 chr11 50005489 50005805 -100777748 - AluJo SINE Alu -8 304 7 508 164 129 9 chr11 50005811 50005927 -100777626 - FLAM_A SINE Alu 0 133 4 1422 197 49 49 chr11 50005937 50006000 -100777553 - L1MC4 LINE L1 -412 7630 7568 1966 103 0 4 chr11 50006000 50006273 -100777280 - AluSx SINE Alu -6 306 35 1422 197 49 49 chr11 50006273 50006579 -100776974 - L1MC4 LINE L1 -473 7569 7261 260 283 151 36 chr11 50006607 50006773 -100776780 - MIR SINE MIR -77 185 1 410 290 10 0 chr11 50007427 50007527 -100776026 - MER91B DNA MER1_type 0 190 90 265 176 30 176 chr11 50007545 50007556 -100775997 - MER91B DNA MER1_type -61 129 118 2241 94 20 0 chr11 50007556 50007855 -100775698 + AluSx SINE Alu 1 305 -7 265 176 30 176 chr11 50007855 50007974 -100775579 - MER91B DNA MER1_type -72 118 18 533 284 96 64 chr11 50008251 50008362 -100775191 - MIR SINE MIR -30 232 126 1854 135 3 7 chr11 50008362 50008651 -100774902 + AluJb SINE Alu 1 288 -24 533 284 96 64 chr11 50008651 50008757 -100774796 - MIR SINE MIR -136 126 8 598 333 51 14 chr11 50009820 50010036 -100773517 + MIR SINE MIR 1 224 -38 820 143 0 0 chr11 50012025 50012144 -100771409 + FLAM_C SINE Alu 1 119 -24 272 278 204 28 chr11 50012347 50012455 -100771098 - L2 LINE L2 -1 3271 3145 1849 153 0 0 chr11 50013375 50013669 -100769884 - AluJo SINE Alu -18 294 1 2143 94 7 0 chr11 50013857 50014155 -100769398 - AluSx SINE Alu -12 300 1 393 241 74 68 chr11 50014823 50014985 -100768568 - MER5A DNA MER1_type -1 188 26 481 269 188 32 chr11 50015096 50015282 -100768271 + MIR SINE MIR 38 252 -10 1479 178 19 7 chr11 50015409 50015679 -100767874 + AluJo SINE Alu 1 273 -39 225 274 0 0 chr11 50015701 50015752 -100767801 + GA-rich Low_complexity Low_complexity 2 52 0 1089 149 0 0 chr11 50015832 50016007 -100767546 - AluSg/x SINE Alu 0 312 138 2238 86 7 0 chr11 50016011 50016302 -100767251 - AluSg SINE Alu -16 294 2 209 167 24 24 chr11 50017786 50017828 -100765725 - MIR SINE MIR -142 66 25 2166 86 3 13 chr11 50018428 50018754 -100764799 + AluSp SINE Alu 1 313 0 345 307 80 7 chr11 50020636 50020786 -100762767 - MIR SINE MIR -58 204 44 266 272 215 31 chr11 50021222 50021417 -100762136 - MIR SINE MIR -19 243 13 458 239 52 65 chr11 50021653 50021722 -100761831 - MIR SINE MIR -82 180 112 1959 140 0 69 chr11 50021722 50022057 -100761496 - AluSx SINE Alu 0 312 1 458 239 52 65 chr11 50022057 50022142 -100761411 - MIR SINE MIR -150 112 28 2063 222 110 26 chr11 50022144 50022689 -100760864 - MLT1E LTR MaLR 0 593 3 782 178 72 108 chr11 50023539 50023871 -100759682 + L1MC3 LINE L1 6778 7097 -688 232 261 11 57 chr11 50023871 50023959 -100759594 + MLT1F1 LTR MaLR 35 118 -449 1818 207 150 17 chr11 50023960 50024487 -100759066 + L1MD3 LINE L1 7399 7995 0 802 180 0 8 chr11 50024568 50024696 -100758857 + FLAM_C SINE Alu 1 127 -16 1317 150 9 4 chr11 50024714 50024941 -100758612 + L1MC3 LINE L1 5446 5673 -2112 259 224 0 17 chr11 50024942 50025000 -100758553 + AluJ/FLAM SINE Alu 2 58 -244 6268 140 54 64 chr11 50025004 50026358 -100757195 + L1MC3 LINE L1 6106 7445 -340 22 0 0 0 chr11 50026360 50026382 -100757171 + AT_rich Low_complexity Low_complexity 1 22 0 774 185 8 0 chr11 50026494 50026624 -100756929 + FLAM_C SINE Alu 2 132 -1 1820 142 6 63 chr11 50026628 50026959 -100756594 + AluJb SINE Alu 1 312 0 29 28 0 0 chr11 50026983 50027019 -100756534 + AT_rich Low_complexity Low_complexity 1 36 0 494 285 137 55 chr11 50027104 50027521 -100756032 - L2 LINE L2 -5 3308 2858 595 241 75 66 chr11 50027831 50027995 -100755558 + MIR SINE MIR 3 171 -91 1734 167 46 0 chr11 50027995 50028269 -100755284 + AluJb SINE Alu 1 290 -22 198 0 0 0 chr11 50028269 50028291 -100755262 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 595 241 75 66 chr11 50028297 50028360 -100755193 + MIR SINE MIR 171 232 -30 436 238 8 40 chr11 50028435 50028561 -100754992 + L2 LINE L2 3192 3313 0 2196 153 73 71 chr11 50028759 50029124 -100754429 + MER21B LTR ERV1 338 706 -157 2207 98 10 3 chr11 50029124 50029420 -100754133 + AluSq SINE Alu 1 298 -15 2196 153 73 71 chr11 50029420 50029559 -100753994 + MER21B LTR ERV1 706 843 -20 2995 162 30 25 chr11 50029590 50029856 -100753697 + MER21B-int LTR ERV1 1 264 -3927 2113 113 10 10 chr11 50029856 50030156 -100753397 + AluSc SINE Alu 1 300 -9 2995 162 30 25 chr11 50030156 50030457 -100753096 + MER21B-int LTR ERV1 264 571 -3620 1549 156 85 46 chr11 50030453 50030819 -100752734 + MER21-int LTR ERV1 3816 4195 -2563 * 2742 39 0 0 chr11 50030823 50031132 -100752421 + AluY SINE Alu 1 309 -2 724 161 0 0 chr11 50031139 50031251 -100752302 + FLAM_C SINE Alu 1 112 -31 1159 225 51 0 chr11 50031251 50031504 -100752049 + MER21-int LTR ERV1 1372 1637 -2554 1933 150 7 0 chr11 50031586 50031886 -100751667 + AluJb SINE Alu 1 302 -10 490 204 190 21 chr11 50031891 50032033 -100751520 + MER21-int LTR ERV1 1638 1803 -2388 2246 127 0 3 chr11 50032076 50032384 -100751169 + AluSx SINE Alu 1 307 -5 425 153 31 31 chr11 50032454 50032552 -100751001 + MER21A LTR ERV1 481 578 -353 212 0 36 0 chr11 50032553 50032581 -100750972 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1997 89 0 50 chr11 50032780 50033060 -100750493 - AluSg SINE Alu -13 297 32 217 270 155 90 chr11 50034835 50035035 -100748518 + MIR SINE MIR 34 246 -16 199 256 77 39 chr11 50035035 50035113 -100748440 + MIR3 SINE MIR 125 205 -3 753 191 0 29 chr11 50035447 50035583 -100747970 + AluJo SINE Alu 2 133 -179 425 295 74 5 chr11 50035587 50035777 -100747776 + L1MC/D LINE L1 5508 5710 -2098 1365 61 12 0 chr11 50035778 50035942 -100747611 - AluSg/x SINE Alu -11 301 136 1235 123 12 0 chr11 50036090 50036261 -100747292 + AluJo SINE Alu 132 304 -8 26 30 0 0 chr11 50036552 50036585 -100746968 + AT_rich Low_complexity Low_complexity 1 33 0 332 257 71 35 chr11 50037066 50037179 -100746374 + L2 LINE L2 3152 3268 -4 2367 109 3 0 chr11 50037521 50037832 -100745721 - AluSx SINE Alu 0 312 1 543 291 24 38 chr11 50038030 50038243 -100745310 - MIR SINE MIR -4 258 49 294 322 18 2 chr11 50041143 50041311 -100742242 + MER117 DNA MER1_type 2 197 0 280 217 48 36 chr11 50041379 50041462 -100742091 + MIR SINE MIR 16 99 -109 279 0 0 0 chr11 50041718 50041749 -100741804 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 1772 166 3 38 chr11 50042115 50042429 -100741124 + AluJo SINE Alu 1 303 -9 315 0 0 0 chr11 50042739 50042778 -100740775 - AluY SINE Alu -24 278 240 1462 71 65 0 chr11 50042779 50042963 -100740590 - AluY SINE Alu -115 196 1 229 205 0 0 chr11 50044167 50044206 -100739347 - L2 LINE L2 -14 3299 3261 545 235 150 34 chr11 50044215 50044468 -100739085 + L2 LINE L2 2795 3064 -249 2287 108 0 7 chr11 50044479 50044786 -100738767 - AluSx SINE Alu -7 305 1 27 73 0 0 chr11 50045056 50045111 -100738442 + GC_rich Low_complexity Low_complexity 1 55 0 2012 157 0 3 chr11 50047035 50047340 -100736213 - AluJb SINE Alu -8 304 1 1790 157 0 0 chr11 50047688 50047949 -100735604 + AluSx SINE Alu 36 296 -16 366 250 61 132 chr11 50049201 50049429 -100734124 + MIR SINE MIR 47 258 -4 568 207 101 87 chr11 50051223 50051343 -100732210 - MIR SINE MIR -10 252 126 2112 121 3 38 chr11 50051343 50051658 -100731895 + AluSx SINE Alu 1 304 -8 568 207 101 87 chr11 50051658 50051745 -100731808 - MIR SINE MIR -136 126 42 761 128 0 0 chr11 50051878 50051995 -100731558 - FRAM SINE Alu 0 176 60 390 273 0 0 chr11 50052340 50052428 -100731125 - MIR SINE MIR -55 207 120 2047 150 0 7 chr11 50052522 50052816 -100730737 + AluSx SINE Alu 2 293 -19 844 243 35 12 chr11 50053039 50053294 -100730259 - MIR SINE MIR 0 262 2 216 0 0 0 chr11 50053741 50053765 -100729788 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 5894 18 2 5 chr11 50053959 50054625 -100728928 + SVA Other Other 760 1423 0 881 194 48 54 chr11 50054673 50054859 -100728694 + MER91B DNA MER1_type 6 190 0 900 231 101 5 chr11 50056139 50056347 -100727206 - MIR SINE MIR -22 240 13 1373 85 0 0 chr11 50056349 50056525 -100727028 - AluSg/x SINE Alu 0 312 137 198 71 0 0 chr11 50056949 50056977 -100726576 + (GGGTG)n Simple_repeat Simple_repeat 5 32 0 2441 72 31 0 chr11 50057768 50058058 -100725495 + AluSp SINE Alu 1 299 -14 2171 128 0 0 chr11 50058066 50058362 -100725191 + AluSq SINE Alu 7 302 -11 568 262 64 12 chr11 50058597 50058769 -100724784 + MIR SINE MIR 82 262 0 2318 100 7 0 chr11 50059090 50059390 -100724163 + AluSx SINE Alu 1 302 -10 635 240 51 20 chr11 50059397 50059593 -100723960 + MIR SINE MIR 17 218 -44 1803 173 0 16 chr11 50059727 50060033 -100723520 + AluJb SINE Alu 1 301 -11 1932 164 14 0 chr11 50060044 50060330 -100723223 + AluJo SINE Alu 1 290 -22 495 33 0 0 chr11 50060470 50060531 -100723022 + (TG)n Simple_repeat Simple_repeat 2 62 0 2284 106 23 0 chr11 50060546 50060849 -100722704 + AluSq SINE Alu 1 310 -3 324 306 58 25 chr11 50060898 50061019 -100722534 + L2 LINE L2 3189 3313 0 1438 201 70 4 chr11 50061066 50061339 -100722214 + AluJo SINE Alu 1 291 -21 334 241 28 56 chr11 50062231 50062339 -100721214 - L2 LINE L2 -8 3264 3160 2306 102 20 0 chr11 50063383 50063687 -100719866 - AluSp SINE Alu -2 311 2 1645 121 0 0 chr11 50063703 50063918 -100719635 - AluSg SINE Alu -95 215 1 2008 155 0 43 chr11 50063918 50064104 -100719449 - AluJb SINE Alu -3 309 141 2228 135 0 0 chr11 50064104 50064407 -100719146 - AluSg SINE Alu -5 305 3 2008 155 0 43 chr11 50064407 50064543 -100719010 - AluJb SINE Alu -171 141 1 583 257 148 5 chr11 50064788 50064990 -100718563 + MIR SINE MIR 13 243 -19 1250 134 27 40 chr11 50115335 50115559 -100667994 - AluSx SINE Alu -91 221 1 1667 63 15 5 chr11 50115638 50115843 -100667710 + AluY SINE Alu 1 207 -104 1248 174 11 33 chr11 50115896 50116166 -100667387 - L1MB8 LINE L1 -1 6177 5914 1642 160 100 4 chr11 50116169 50116438 -100667115 + AluSg SINE Alu 1 295 -15 2230 120 3 0 chr11 50116468 50116759 -100666794 + AluSx SINE Alu 1 292 -20 727 294 7 11 chr11 50116779 50117065 -100666488 + AluSc SINE Alu 1 285 -14 732 122 0 58 chr11 50117201 50117340 -100666213 + AluSg/x SINE Alu 178 308 -4 346 259 27 54 chr11 50117903 50118050 -100665503 + MIR SINE MIR 31 173 -89 2276 102 7 0 chr11 50118068 50118363 -100665190 - AluSx SINE Alu -15 297 1 214 158 0 0 chr11 50118456 50118494 -100665059 + (TG)n Simple_repeat Simple_repeat 2 39 0 198 0 0 0 chr11 50118740 50118762 -100664791 + (T)n Simple_repeat Simple_repeat 1 22 0 424 219 123 32 chr11 50119927 50120082 -100663471 + MIR SINE MIR 82 250 -12 2225 102 17 0 chr11 50120320 50120615 -100662938 - AluSx SINE Alu -12 300 1 605 134 0 0 chr11 50121393 50121475 -100662078 - AluS SINE Alu -230 83 2 854 110 22 0 chr11 50121477 50121613 -100661940 + MER41A LTR ERV1 416 554 0 2405 86 13 0 chr11 50121749 50122050 -100661503 - AluSg SINE Alu -5 305 1 369 94 0 47 chr11 50122435 50122499 -100661054 + MER41B LTR ERV1 333 393 -242 2371 97 0 0 chr11 50122683 50122981 -100660572 + AluSx SINE Alu 1 298 -14 250 267 157 59 chr11 50123192 50123428 -100660125 - L2 LINE L2 -339 2975 2717 627 73 0 101 chr11 50123544 50123653 -100659900 - L1PA3 LINE L1 -1 6154 6057 819 181 0 0 chr11 50123653 50123786 -100659767 - FLAM_C SINE Alu 0 133 1 1079 207 16 20 chr11 50123786 50124037 -100659516 + MER58B DNA MER1_type 77 326 -15 1971 97 3 97 chr11 50124174 50124516 -100659037 + AluSp SINE Alu 1 310 -3 768 204 0 6 chr11 50124523 50124685 -100658868 + MER90 LTR ERV1 207 367 -247 527 108 0 0 chr11 50124883 50124957 -100658596 + Alu SINE Alu 226 299 -11 958 224 4 25 chr11 50124983 50125228 -100658325 - AluSq SINE Alu 0 313 74 436 286 81 22 chr11 50125254 50125439 -100658114 - L1MC/D LINE L1 -2003 5805 5610 254 306 162 0 chr11 50125449 50125560 -100657993 + L2 LINE L2 2923 3051 -221 247 283 43 76 chr11 50125619 50125711 -100657842 + L2 LINE L2 3184 3272 0 1881 125 52 7 chr11 50125840 50126129 -100657424 - AluSq SINE Alu -11 302 1 2588 76 0 0 chr11 50126143 50126446 -100657107 - AluSq SINE Alu -10 303 1 200 352 152 21 chr11 50127089 50127234 -100656319 - MIR3 SINE MIR -43 165 2 225 245 9 19 chr11 50128493 50128599 -100654954 + C-rich Low_complexity Low_complexity 6 110 0 252 0 0 0 chr11 50128961 50128989 -100654564 + (TA)n Simple_repeat Simple_repeat 2 29 0 2247 116 13 0 chr11 50129445 50129748 -100653805 - AluSx SINE Alu -5 307 1 303 263 59 32 chr11 50129776 50129962 -100653591 - L1ME4a LINE L1 -73 6048 5858 544 216 174 54 chr11 50130050 50130309 -100653244 - MER102b DNA MER1_type -2 339 50 237 265 0 29 chr11 50130327 50130395 -100653158 - MIR SINE MIR -29 233 168 247 219 109 0 chr11 50130418 50130482 -100653071 - L2 LINE L2 -65 3248 3178 688 120 12 2 chr11 50130588 50130838 -100652715 + AluSq SINE Alu 1 301 -12 2443 80 23 0 chr11 50130984 50131284 -100652269 - AluSg SINE Alu -3 307 1 2066 136 7 0 chr11 50132604 50132898 -100650655 + AluSx SINE Alu 1 296 -16 21 36 0 0 chr11 50132906 50132934 -100650619 + AT_rich Low_complexity Low_complexity 1 28 0 1692 168 3 36 chr11 50133208 50133517 -100650036 + AluJo SINE Alu 1 299 -13 1800 176 3 3 chr11 50133523 50133819 -100649734 + AluJb SINE Alu 7 302 -10 1370 160 13 30 chr11 50134130 50134361 -100649192 - AluJo SINE Alu -45 267 41 681 219 0 0 chr11 50134366 50134513 -100649040 - FLAM_A SINE Alu 0 147 1 2530 81 0 7 chr11 50134546 50134854 -100648699 + AluSq SINE Alu 1 306 -7 732 268 118 26 chr11 50134855 50135368 -100648185 + L1MB8 LINE L1 5279 5884 -294 381 330 131 15 chr11 50136173 50136379 -100647174 + MIR SINE MIR 33 262 0 438 270 129 39 chr11 50137168 50137346 -100646207 - MIR SINE MIR -22 240 47 326 289 124 44 chr11 50138425 50138650 -100644903 - L3 LINE CR1 -264 1313 1071 206 234 26 39 chr11 50138653 50138730 -100644823 + MIR SINE MIR 53 128 -134 323 224 0 0 chr11 50138835 50138893 -100644660 - L2 LINE L2 0 3313 3256 1133 150 0 0 chr11 50139346 50139513 -100644040 - AluSg/x SINE Alu -9 303 137 534 343 11 54 chr11 50139518 50139609 -100643944 - L2 LINE L2 -568 2746 2653 2089 72 45 8 chr11 50139609 50139874 -100643679 + AluSc SINE Alu 17 291 -18 534 343 11 54 chr11 50139874 50140135 -100643418 - L2 LINE L2 -661 2653 2409 182 212 0 0 chr11 50140332 50140365 -100643188 + MIR SINE MIR 111 143 -65 1830 72 34 4 chr11 50140483 50140718 -100642835 + AluSx SINE Alu 55 296 -16 633 111 28 0 chr11 50141086 50141194 -100642359 + L1MB7 LINE L1 6055 6165 -19 270 286 133 64 chr11 50141669 50141872 -100641681 + MIR SINE MIR 4 220 -42 367 269 70 86 chr11 50142261 50142417 -100641136 - MIR SINE MIR -74 188 34 2224 108 7 16 chr11 50142417 50142724 -100640829 - AluSx SINE Alu -8 304 1 367 269 70 86 chr11 50142724 50142753 -100640800 - MIR SINE MIR -228 34 6 21 0 0 0 chr11 50142892 50142913 -100640640 + AT_rich Low_complexity Low_complexity 1 21 0 1747 182 3 19 chr11 50142929 50143236 -100640317 - AluJo SINE Alu -10 302 1 23 54 0 0 chr11 50143244 50143281 -100640272 + AT_rich Low_complexity Low_complexity 1 37 0 274 200 0 0 chr11 50143302 50143347 -100640206 - MIR SINE MIR -56 152 108 2404 86 0 0 chr11 50144525 50144828 -100638725 + AluSc SINE Alu 1 303 -6 2310 107 7 0 chr11 50146243 50146541 -100637012 + AluSx SINE Alu 1 300 -12 229 236 146 0 chr11 50146852 50146907 -100636646 - L2 LINE L2 0 3272 3210 667 319 50 8 chr11 50146970 50147211 -100636342 - MIR SINE MIR 0 262 12 363 270 52 26 chr11 50147374 50147489 -100636064 + MIR SINE MIR 24 141 -121 831 221 156 22 chr11 50147489 50147720 -100635833 - MIR SINE MIR 0 262 1 595 202 290 11 chr11 50148325 50148508 -100635045 + MIR SINE MIR 29 262 0 359 202 29 96 chr11 50148630 50148734 -100634819 + MIR SINE MIR 100 196 -66 1956 126 30 17 chr11 50148734 50149036 -100634517 - AluSx SINE Alu -6 306 1 1601 154 90 4 chr11 50149404 50149652 -100633901 + AluJo SINE Alu 14 288 -24 213 39 0 0 chr11 50149652 50149678 -100633875 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1601 154 90 4 chr11 50149678 50149696 -100633857 + AluJo SINE Alu 288 303 -9 705 296 27 0 chr11 50149780 50149966 -100633587 - MIR SINE MIR -26 236 46 189 0 0 0 chr11 50150523 50150544 -100633009 + (TC)n Simple_repeat Simple_repeat 1 21 0 1828 149 72 36 chr11 50152602 50152964 -100630589 - THE1C LTR MaLR 0 375 1 2223 109 6 6 chr11 50153242 50153554 -100629999 + AluSx SINE Alu 1 312 0 317 257 352 0 chr11 50154290 50154469 -100629084 - MIR SINE MIR -15 247 6 331 212 242 15 chr11 50155296 50155428 -100628125 - L2 LINE L2 -1 3271 3110 2035 139 7 0 chr11 50157248 50157550 -100626003 - AluJb SINE Alu -7 305 2 2278 106 7 0 chr11 50157944 50158247 -100625306 + AluSx SINE Alu 1 305 -7 2188 103 14 0 chr11 50158440 50158730 -100624823 + AluSp SINE Alu 1 294 -19 1863 153 20 10 chr11 50158737 50159037 -100624516 + AluJb SINE Alu 1 303 -9 207 241 177 25 chr11 50161256 50161335 -100622218 - L2 LINE L2 -9 3263 3173 1682 160 38 20 chr11 50161615 50161908 -100621645 + AluJo SINE Alu 5 302 -10 297 331 159 18 chr11 50161966 50162129 -100621424 - MER5A DNA MER1_type -3 186 1 2013 131 10 20 chr11 50162362 50162659 -100620894 - AluSx SINE Alu -17 295 2 469 169 0 12 chr11 50164578 50164661 -100618892 - AluSp/q SINE Alu -6 307 226 592 259 74 100 chr11 50165187 50165538 -100618015 + L2 LINE L2 2968 3309 -4 2155 47 0 12 chr11 50166115 50166373 -100617180 - AluY SINE Alu -13 298 44 211 270 14 14 chr11 50167068 50167142 -100616411 - MIR SINE MIR -12 250 177 * 1333 271 27 53 chr11 50167141 50167535 -100616018 + L2 LINE L2 2784 3145 -168 2136 116 3 0 chr11 50167535 50167845 -100615708 - AluSx SINE Alu 0 311 1 1333 271 27 53 chr11 50167845 50168009 -100615544 + L2 LINE L2 3145 3312 -1 902 83 0 0 chr11 50168055 50172034 -100611519 - AluY SINE Alu -23 288 169 23590 75 14 9 chr11 50168064 50171899 -100611654 - L1PA6 LINE L1 0 6154 2340 2440 59 0 7 chr11 50171899 50172204 -100611349 - AluY SINE Alu -8 303 1 23590 75 14 9 chr11 50172204 50173093 -100610460 - L1PA6 LINE L1 -3814 2340 1457 2393 81 7 0 chr11 50173093 50173401 -100610152 - AluSg SINE Alu 0 310 1 23590 75 14 9 chr11 50173401 50174811 -100608742 - L1PA6 LINE L1 -4697 1457 11 2499 71 3 0 chr11 50174823 50175134 -100608419 - AluSp SINE Alu -1 312 1 404 272 0 82 chr11 50175134 50175281 -100608272 - MIR SINE MIR -113 149 15 344 277 83 10 chr11 50175557 50175718 -100607835 + MIR SINE MIR 31 208 0 487 281 98 44 chr11 50175834 50176037 -100607516 + MIR SINE MIR 6 219 -43 22 0 0 0 chr11 50176377 50176399 -100607154 + AT_rich Low_complexity Low_complexity 1 22 0 260 265 182 23 chr11 50176816 50176948 -100606605 - MIR SINE MIR -109 153 1 278 196 0 0 chr11 50177026 50177072 -100606481 + AluSx SINE Alu 1 46 -257 1070 236 7 7 chr11 50177354 50177634 -100605919 + AluSx SINE Alu 29 308 -4 2176 75 3 3 chr11 50177651 50177933 -100605620 + AluSc SINE Alu 14 295 -14 341 175 25 12 chr11 50177938 50177961 -100605592 - L1MB8 LINE L1 -279 5899 5878 610 76 13 0 chr11 50177961 50178040 -100605513 + MADE1 DNA Mariner 1 80 0 341 175 25 12 chr11 50178040 50178096 -100605457 - L1MB8 LINE L1 -300 5878 5819 326 260 52 10 chr11 50178098 50178194 -100605359 - L2 LINE L2 -14 3299 3200 707 230 148 0 chr11 50179405 50179614 -100603939 + MIR SINE MIR 15 254 -8 520 266 53 32 chr11 50179680 50179868 -100603685 + MIR SINE MIR 58 249 -13 2112 113 0 3 chr11 50179873 50180165 -100603388 - AluSx SINE Alu -21 291 1 1062 159 74 0 chr11 50180458 50180634 -100602919 - MER5A DNA MER1_type 0 189 1 2031 96 48 0 chr11 50180654 50180947 -100602606 - AluSx SINE Alu -5 307 1 356 163 133 51 chr11 50182013 50182111 -100601442 - MER94 DNA DNA -5 129 24 900 201 77 0 chr11 50182428 50182622 -100600931 - MER3 DNA MER1_type 0 209 1 207 100 0 0 chr11 50182651 50182681 -100600872 + (A)n Simple_repeat Simple_repeat 1 30 0 1790 157 3 10 chr11 50183308 50183608 -100599945 - AluSx SINE Alu -14 298 1 2339 74 0 3 chr11 50183817 50184115 -100599438 + AluY SINE Alu 1 297 -14 1549 114 122 11 chr11 50184361 50184623 -100598930 + AluSg SINE Alu 1 291 -19 2064 133 3 0 chr11 50184830 50185139 -100598414 + AluSx SINE Alu 3 312 0 2155 120 0 3 chr11 50185149 50185450 -100598103 + AluSx SINE Alu 1 300 -12 1665 185 31 0 chr11 50185458 50185750 -100597803 + AluJb SINE Alu 1 301 -11 225 318 98 35 chr11 50185763 50185936 -100597617 + MER20B DNA MER1_type 2 185 -598 265 148 98 66 chr11 50186015 50186076 -100597477 - L2 LINE L2 0 3272 3210 418 328 78 52 chr11 50186814 50187046 -100596507 - MIR SINE MIR -21 241 4 500 244 108 11 chr11 50188888 50189064 -100594489 - MIR SINE MIR -37 225 33 2864 9 0 0 chr11 50189159 50189477 -100594076 - AluYb8 SINE Alu 0 318 1 355 289 127 52 chr11 50194416 50194724 -100588829 - L2 LINE L2 -8 3264 2934 186 279 57 82 chr11 50195620 50195757 -100587796 - MIR SINE MIR -60 202 68 2263 96 0 0 chr11 50195757 50196058 -100587495 + AluY SINE Alu 1 301 -10 186 279 57 82 chr11 50196058 50196078 -100587475 - MIR SINE MIR -194 68 49 333 226 71 12 chr11 50196176 50196260 -100587293 + MIR SINE MIR 37 125 -137 241 175 0 53 chr11 50196260 50196317 -100587236 + AluSp SINE Alu 113 166 -137 1708 162 3 52 chr11 50196318 50196646 -100586907 + AluJb SINE Alu 1 312 0 2130 102 33 0 chr11 50196647 50196950 -100586603 + AluSq SINE Alu 1 313 0 1832 110 36 14 chr11 50198522 50198803 -100584750 + AluSx SINE Alu 12 298 -14 312 161 7 131 chr11 50201101 50201238 -100582315 + AluSp/q SINE Alu 171 290 -13 1565 138 27 90 chr11 50201265 50201598 -100581955 + AluJo SINE Alu 1 312 0 326 254 149 0 chr11 50201625 50201739 -100581814 - L2 LINE L2 -218 3054 2924 1905 126 38 0 chr11 50201859 50202152 -100581401 + AluSx SINE Alu 1 304 -8 1915 131 3 24 chr11 50202353 50202650 -100580903 - AluJo SINE Alu -21 291 1 405 299 16 16 chr11 50202988 50203115 -100580438 + MIR3 SINE MIR 81 207 -1 1250 152 35 149 chr11 50203550 50203687 -100579866 + AluYb8 SINE Alu 1 152 -156 2227 112 0 0 chr11 50203687 50203999 -100579554 + AluSx SINE Alu 1 312 0 1250 152 35 149 chr11 50203999 50204209 -100579344 + AluYb8 SINE Alu 152 308 0 2199 91 10 0 chr11 50204317 50204613 -100578940 + AluSx SINE Alu 4 302 -10 862 165 51 0 chr11 50204613 50204771 -100578782 + AluJb SINE Alu 134 299 -13 2133 99 3 3 chr11 50205534 50205826 -100577727 - AluSq SINE Alu -16 297 6 241 309 0 24 chr11 50205832 50205916 -100577637 + MLT1D LTR MaLR 106 187 -318 2121 100 3 13 chr11 50206912 50207075 -100576478 - AluSx SINE Alu -15 297 137 2192 112 3 0 chr11 50207075 50207380 -100576173 - AluSq SINE Alu -7 306 1 2121 100 3 13 chr11 50207380 50207516 -100576037 - AluSx SINE Alu -175 137 1 237 262 60 0 chr11 50207520 50207604 -100575949 - L1MB7 LINE L1 0 6184 6096 1145 214 88 88 chr11 50207644 50207968 -100575585 - L1ME1 LINE L1 -46 6120 5794 1459 169 45 48 chr11 50207968 50208281 -100575272 - AluJo SINE Alu 0 312 1 1145 214 88 88 chr11 50208281 50208489 -100575064 - L1ME1 LINE L1 -371 5795 5588 780 252 57 8 chr11 50208467 50208729 -100574824 - L1MEc LINE L1 -4540 1856 1582 * 24 77 0 0 chr11 50208729 50208781 -100574772 + AT_rich Low_complexity Low_complexity 1 52 0 1983 132 7 0 chr11 50208838 50209134 -100574419 + AluSx SINE Alu 1 298 -14 2197 93 3 7 chr11 50209134 50209444 -100574109 + AluY SINE Alu 1 309 -2 1266 189 85 8 chr11 50209462 50209722 -100573831 + AluJo SINE Alu 5 284 -28 189 0 0 0 chr11 50209725 50209746 -100573807 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2008 85 3 69 chr11 50209866 50210184 -100573369 - AluSx SINE Alu -15 297 1 204 158 0 0 chr11 50210366 50210404 -100573149 + CT-rich Low_complexity Low_complexity 3 40 0 229 146 0 24 chr11 50210442 50210483 -100573070 - MER66B LTR ERV1 -150 336 297 282 152 25 25 chr11 50210483 50210562 -100572991 - L1MEc LINE L1 -5330 1066 988 1876 149 7 7 chr11 50210563 50210872 -100572681 - AluSx SINE Alu -3 309 1 2096 115 3 10 chr11 50211072 50211384 -100572169 - AluSx SINE Alu -2 310 1 2125 74 0 7 chr11 50212173 50212483 -100571070 + AluY SINE Alu 1 308 0 1515 172 58 3 chr11 50212611 50212902 -100570651 + AluJo SINE Alu 1 307 -5 451 204 87 0 chr11 50212904 50213007 -100570546 + L1MB2 LINE L1 6053 6164 -7 2179 83 3 0 chr11 50213019 50213309 -100570244 + AluY SINE Alu 1 291 -20 253 146 0 0 chr11 50213309 50213357 -100570196 + L1MB2 LINE L1 6110 6157 -14 846 301 154 16 chr11 50213918 50214354 -100569199 - L2 LINE L2 -2 3311 2816 2212 82 0 7 chr11 50214359 50214652 -100568901 - AluSc SINE Alu -18 291 1 2172 119 0 0 chr11 50214844 50215168 -100568385 - AluSq SINE Alu 0 313 1 1489 123 0 69 chr11 50217474 50217751 -100565802 - AluJo SINE Alu -13 299 42 1516 173 33 20 chr11 50218055 50218361 -100565192 - AluJo SINE Alu 0 312 3 1767 153 36 0 chr11 50218420 50218721 -100564832 - AluJo SINE Alu 0 312 1 2248 89 3 7 chr11 50218731 50219034 -100564519 - AluSc SINE Alu -7 302 1 1953 130 0 26 chr11 50219381 50219505 -100564048 + AluSx SINE Alu 8 134 -178 2090 124 0 3 chr11 50219505 50219812 -100563741 + AluSx SINE Alu 4 309 -3 1953 130 0 26 chr11 50219812 50219995 -100563558 + AluSx SINE Alu 134 307 -5 1508 185 10 20 chr11 50220086 50220383 -100563170 + AluJo SINE Alu 7 300 -12 2011 106 3 0 chr11 50220385 50220706 -100562847 + AluSp SINE Alu 1 322 0 1556 116 30 0 chr11 50220747 50220980 -100562573 + AluSx SINE Alu 1 240 -72 2514 52 0 7 chr11 50220980 50221288 -100562265 + AluY SINE Alu 1 307 -4 477 114 0 45 chr11 50221289 50221377 -100562176 + AluSx SINE Alu 227 310 0 800 197 0 0 chr11 50221687 50221824 -100561729 - FLAM_C SINE Alu -6 137 1 4607 75 19 65 chr11 50221884 50222059 -100561494 - LTR8 LTR ERV1 0 691 510 2216 118 13 0 chr11 50222059 50222364 -100561189 - AluSx SINE Alu -3 309 1 4607 75 19 65 chr11 50222364 50222748 -100560805 - LTR8 LTR ERV1 -181 510 170 185 62 0 31 chr11 50222755 50222787 -100560766 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1942 137 58 0 chr11 50222787 50223057 -100560496 - AluSx SINE Alu -23 289 1 4607 75 19 65 chr11 50223057 50223220 -100560333 - LTR8 LTR ERV1 -521 170 1 670 197 46 0 chr11 50223358 50223510 -100560043 + MER90 LTR ERV1 1 159 -416 2156 120 23 0 chr11 50223510 50223809 -100559744 + AluSg SINE Alu 1 306 -4 2282 113 0 0 chr11 50223809 50224101 -100559452 + AluSg SINE Alu 1 292 -18 1306 124 6 0 chr11 50224101 50224279 -100559274 + AluSg/x SINE Alu 134 312 0 485 308 82 11 chr11 50224280 50224462 -100559091 - L2 LINE L2 -848 2466 2272 360 252 59 17 chr11 50224642 50224761 -100558792 - MIR SINE MIR -80 182 59 968 256 27 40 chr11 50224798 50224944 -100558609 - MLT1C LTR MaLR 0 467 321 1597 160 73 24 chr11 50224944 50225231 -100558322 - AluJb SINE Alu -11 301 1 968 256 27 40 chr11 50225231 50225385 -100558168 - MLT1C LTR MaLR -146 321 171 912 128 0 0 chr11 50225390 50225515 -100558038 - FLAM_A SINE Alu -12 130 6 2312 128 0 0 chr11 50225549 50225854 -100557699 - AluSx SINE Alu -7 305 1 294 273 0 23 chr11 50225858 50225946 -100557607 - MLT1C LTR MaLR -314 191 106 2107 121 3 16 chr11 50225947 50226252 -100557301 + AluSg SINE Alu 1 301 -9 4536 161 25 1 chr11 50226253 50226906 -100556647 - L1MB2 LINE L1 -12 6159 5482 2130 139 10 0 chr11 50226906 50227209 -100556344 - AluSx SINE Alu -6 306 1 4536 161 25 1 chr11 50227209 50227371 -100556182 - L1MB2 LINE L1 -689 5482 5325 1118 174 0 0 chr11 50227371 50227549 -100556004 - AluJo SINE Alu -17 295 118 342 140 0 0 chr11 50227596 50227653 -100555900 - FLAM_A SINE Alu -6 127 71 577 164 48 79 chr11 50227653 50227724 -100555829 - L1MB2 LINE L1 -816 5330 5258 2482 94 0 0 chr11 50227724 50228032 -100555521 - AluSq SINE Alu -5 308 1 577 164 48 79 chr11 50228032 50228125 -100555428 - L1MB2 LINE L1 -888 5258 5171 1163 106 56 0 chr11 50228131 50228292 -100555261 - AluSq SINE Alu -8 305 136 466 274 27 7 chr11 50228297 50228443 -100555110 - L1M4 LINE L1 -2297 3849 3701 2337 106 0 0 chr11 50228485 50228786 -100554767 + AluSc SINE Alu 1 301 -8 635 147 20 0 chr11 50228804 50228906 -100554647 + AluSg/x SINE Alu 193 296 -16 2329 119 0 6 chr11 50228984 50229295 -100554258 + AluSx SINE Alu 1 309 -3 2051 124 45 0 chr11 50229313 50229603 -100553950 + AluSx SINE Alu 1 303 -9 405 0 0 0 chr11 50229603 50229648 -100553905 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 668 244 6 12 chr11 50230168 50230340 -100553213 + L1MC4 LINE L1 6450 6620 -1422 919 173 0 40 chr11 50230447 50230620 -100552933 - FRAM SINE Alu 0 166 1 22 0 0 0 chr11 50230620 50230642 -100552911 + AT_rich Low_complexity Low_complexity 1 22 0 1251 194 32 28 chr11 50230644 50230891 -100552662 + AluJo SINE Alu 1 248 -64 492 224 0 0 chr11 50230895 50230980 -100552573 - AluJ/FLAM SINE Alu -226 86 2 2307 118 3 0 chr11 50231464 50231770 -100551783 + AluSx SINE Alu 1 307 -5 192 200 0 0 chr11 50231793 50231828 -100551725 + MIR SINE MIR 213 247 -15 666 205 37 12 chr11 50231977 50232138 -100551415 + L1MD2 LINE L1 5770 5934 -425 183 42 0 0 chr11 50232141 50232165 -100551388 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1368 209 16 0 chr11 50232167 50232421 -100551132 - AluJo SINE Alu -30 282 25 716 226 119 13 chr11 50232430 50232656 -100550897 + L1ME1 LINE L1 5917 6166 0 2026 102 75 10 chr11 50232687 50232980 -100550573 + AluSx SINE Alu 1 312 0 1690 178 56 11 chr11 50232995 50233282 -100550271 + AluJb SINE Alu 1 300 -12 2386 82 0 10 chr11 50234049 50234353 -100549200 + AluSq SINE Alu 1 301 -12 363 252 136 0 chr11 50235076 50235179 -100548374 - L2 LINE L2 0 3313 3197 850 151 0 0 chr11 50236374 50236500 -100547053 - AluJ SINE Alu -4 308 183 255 180 0 0 chr11 50236501 50236551 -100547002 - AluJ SINE Alu -170 132 83 2116 148 7 0 chr11 50236552 50236857 -100546696 - AluJo SINE Alu -4 308 2 598 215 176 56 chr11 50237112 50237345 -100546208 + MIR SINE MIR 2 262 0 2262 93 13 23 chr11 50238060 50238360 -100545193 - AluSc SINE Alu -12 297 1 2511 64 0 3 chr11 50239025 50239323 -100544230 - AluY SINE Alu -14 297 1 437 229 33 49 chr11 50240909 50241031 -100542522 - L2 LINE L2 -27 3286 3167 935 122 0 0 chr11 50241033 50241156 -100542397 + AluSq/x SINE Alu 1 123 -190 2442 87 0 3 chr11 50241163 50241462 -100542091 + AluSx SINE Alu 1 298 -14 1995 279 170 17 chr11 50241520 50241861 -100541692 - L2 LINE L2 -260 3053 2766 2378 94 3 0 chr11 50241861 50242158 -100541395 + AluSp SINE Alu 1 298 -15 1995 279 170 17 chr11 50242158 50242969 -100540584 - L2 LINE L2 -547 2766 1723 310 271 73 0 chr11 50243114 50243210 -100540343 - L2 LINE L2 -1862 1452 1350 2205 124 0 0 chr11 50244480 50244770 -100538783 + AluSx SINE Alu 1 290 -22 1243 100 0 0 chr11 50244772 50244922 -100538631 + AluSq/x SINE Alu 1 150 -162 1640 131 0 17 chr11 50244922 50245159 -100538394 + AluSq SINE Alu 65 297 -16 252 0 0 0 chr11 50246483 50246511 -100537042 + (TG)n Simple_repeat Simple_repeat 2 29 0 1795 127 25 22 chr11 50246919 50247194 -100536359 + AluJo SINE Alu 1 276 -36 2394 99 0 0 chr11 50247219 50247512 -100536041 + AluSx SINE Alu 1 293 -19 358 309 8 8 chr11 50247854 50247980 -100535573 + L2 LINE L2 3165 3290 -23 2209 82 13 29 chr11 50250436 50250742 -100532811 + AluSx SINE Alu 1 301 -11 1930 165 0 13 chr11 50250750 50251059 -100532494 + AluJo SINE Alu 1 305 -7 328 257 27 0 chr11 50251385 50251459 -100532094 - MIR3 SINE MIR -48 160 85 2400 69 7 0 chr11 50251505 50251795 -100531758 + AluY SINE Alu 1 292 -19 2296 100 10 0 chr11 50251958 50252257 -100531296 + AluSx SINE Alu 1 302 -10 204 40 0 0 chr11 50252681 50252706 -100530847 + (A)n Simple_repeat Simple_repeat 1 25 0 243 220 31 13 chr11 50252712 50252786 -100530767 + MER5B DNA MER1_type 60 124 -54 2317 65 11 0 chr11 50252858 50253180 -100530373 - AluSp SINE Alu 0 329 5 1881 83 68 54 chr11 50253187 50253494 -100530059 - AluY SINE Alu 0 311 1 2046 141 6 32 chr11 50253582 50253894 -100529659 - AluJb SINE Alu -8 304 1 231 182 18 18 chr11 50253930 50253985 -100529568 + MIR SINE MIR 153 207 -55 378 260 123 6 chr11 50255839 50256001 -100527552 + MIR3 SINE MIR 30 197 -22 1124 90 12 0 chr11 50256148 50256314 -100527239 + (TTTC)n Simple_repeat Simple_repeat 2 169 0 2049 119 0 4 chr11 50256315 50256593 -100526960 - AluSq SINE Alu -35 278 2 242 192 19 0 chr11 50256605 50256657 -100526896 - MIR SINE MIR -74 188 136 2367 93 20 0 chr11 50256663 50256963 -100526590 - AluSx SINE Alu -3 309 4 485 262 43 28 chr11 50256998 50257139 -100526414 - MIR SINE MIR -112 150 8 828 179 0 0 chr11 50257163 50257297 -100526256 + FLAM_C SINE Alu 9 142 -1 2642 53 0 0 chr11 50257353 50257655 -100525898 - AluY SINE Alu -9 302 1 600 204 74 133 chr11 50259154 50259299 -100524254 + MIR SINE MIR 9 161 -101 756 196 49 12 chr11 50259299 50259462 -100524091 + FAM SINE Alu 1 169 -6 600 204 74 133 chr11 50259462 50259519 -100524034 + MIR SINE MIR 161 194 -68 730 153 0 8 chr11 50259519 50259643 -100523910 + FLAM_C SINE Alu 1 123 -10 600 204 74 133 chr11 50259643 50259709 -100523844 + MIR SINE MIR 194 262 0 359 282 183 0 chr11 50260770 50260901 -100522652 + MIR SINE MIR 108 262 0 2327 96 10 0 chr11 50261428 50261720 -100521833 + AluSq SINE Alu 1 295 -18 27 0 0 0 chr11 50262694 50262721 -100520832 + AT_rich Low_complexity Low_complexity 1 27 0 1996 112 0 4 chr11 50262724 50262982 -100520571 + AluSc SINE Alu 1 257 -52 189 0 0 0 chr11 50262983 50263004 -100520549 + (CAA)n Simple_repeat Simple_repeat 1 21 0 748 125 0 33 chr11 50263009 50263129 -100520424 - FLAM_C SINE Alu -17 116 1 2168 133 17 0 chr11 50263135 50263437 -100520116 - AluSx SINE Alu -5 307 1 2019 123 3 39 chr11 50263894 50264203 -100519350 - AluJb SINE Alu -14 298 1 2280 107 3 0 chr11 50264219 50264519 -100519034 - AluSx SINE Alu 0 312 12 2427 95 3 0 chr11 50265640 50265945 -100517608 + AluSx SINE Alu 2 307 -5 2310 97 0 7 chr11 50266219 50266508 -100517045 + AluSc SINE Alu 1 287 -22 853 210 0 6 chr11 50266564 50266731 -100516822 - MIR SINE MIR -94 168 3 948 118 86 26 chr11 50266806 50266958 -100516595 - AluJb SINE Alu -16 296 136 2032 89 4 4 chr11 50267011 50267268 -100516285 - AluSx SINE Alu -55 257 1 318 225 25 25 chr11 50267542 50267622 -100515931 + MLT1D LTR MaLR 27 106 -399 2332 106 0 7 chr11 50267636 50267938 -100515615 + AluSx SINE Alu 4 303 -9 1530 194 68 0 chr11 50268371 50268481 -100515072 + AluJb SINE Alu 8 109 -203 213 39 0 0 chr11 50268481 50268507 -100515046 + (CAA)n Simple_repeat Simple_repeat 3 28 0 1530 194 68 0 chr11 50268507 50268674 -100514879 + AluJb SINE Alu 109 304 -8 968 145 7 7 chr11 50268674 50268819 -100514734 - FRAM SINE Alu -32 144 1 2193 91 0 17 chr11 50268932 50269228 -100514325 - AluY SINE Alu -20 291 1 2239 128 0 0 chr11 50269228 50269526 -100514027 - AluSx SINE Alu -14 298 1 649 191 0 0 chr11 50269561 50269671 -100513882 - FLAM_A SINE Alu -32 110 1 1157 187 38 0 chr11 50269743 50269978 -100513575 - MER90 LTR ERV1 -1 613 370 189 0 0 0 chr11 50269980 50270001 -100513552 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2234 92 0 3 chr11 50270002 50270284 -100513269 - AluSq SINE Alu -32 281 1 1162 174 66 140 chr11 50270299 50270652 -100512901 + MER34 LTR ERV1 1 310 -232 2134 109 16 0 chr11 50270652 50270955 -100512598 - AluSx SINE Alu -4 308 1 1162 174 66 140 chr11 50270955 50271088 -100512465 + MER34 LTR ERV1 310 451 -91 1240 116 0 6 chr11 50271128 50271300 -100512253 + AluSc SINE Alu 40 210 -99 29 0 0 0 chr11 50271429 50271458 -100512095 + AT_rich Low_complexity Low_complexity 1 29 0 29 101 0 0 chr11 50271499 50271598 -100511955 + AT_rich Low_complexity Low_complexity 1 99 0 339 283 105 63 chr11 50271692 50272138 -100511415 - L1MCa LINE L1 -4005 2421 1957 218 135 27 27 chr11 50272213 50272287 -100511266 + (TA)n Simple_repeat Simple_repeat 1 74 0 221 199 5 89 chr11 50272363 50272554 -100510999 + (TTATA)n Simple_repeat Simple_repeat 3 177 0 * 381 192 54 12 chr11 50272488 50272655 -100510898 + (TA)n Simple_repeat Simple_repeat 1 174 0 315 277 20 30 chr11 50272556 50272657 -100510896 - L1MC3 LINE L1 -1138 6647 6548 * 218 203 70 31 chr11 50272622 50272750 -100510803 + (CTATA)n Simple_repeat Simple_repeat 1 133 0 * 2412 47 0 4 chr11 50272912 50273191 -100510362 - AluY SINE Alu -15 296 19 286 283 100 61 chr11 50273606 50273786 -100509767 + MER5A DNA MER1_type 1 187 -2 569 293 59 40 chr11 50274238 50274491 -100509062 - MIR SINE MIR 0 262 5 2232 110 0 3 chr11 50274555 50274855 -100508698 - AluSg SINE Alu -11 299 1 5060 178 37 35 chr11 50274855 50275583 -100507970 - L1 LINE L1 -3764 3084 2359 2471 67 13 3 chr11 50275583 50275881 -100507672 - AluY SINE Alu -10 301 1 5060 178 37 35 chr11 50275881 50275951 -100507602 - L1 LINE L1 -4489 2359 2291 2271 107 7 7 chr11 50275951 50276251 -100507302 - AluSx SINE Alu -12 300 1 5060 178 37 35 chr11 50276251 50276569 -100506984 - L1 LINE L1 -4557 2291 1975 2197 115 7 3 chr11 50276569 50276873 -100506680 - AluSp SINE Alu -8 305 1 5060 178 37 35 chr11 50276873 50277219 -100506334 - L1 LINE L1 -4873 1975 1616 1383 113 5 0 chr11 50277322 50277525 -100506028 + LTR8 LTR ERV1 332 535 -156 2054 153 0 0 chr11 50277526 50277826 -100505727 + AluJb SINE Alu 1 300 -12 560 296 53 6 chr11 50277832 50278001 -100505552 - MIR SINE MIR -6 256 80 2324 85 7 0 chr11 50278016 50278310 -100505243 - AluSx SINE Alu -16 296 1 28 61 0 0 chr11 50280092 50280141 -100503412 + GC_rich Low_complexity Low_complexity 1 49 0 21 82 0 0 chr11 50280521 50280570 -100502983 + GC_rich Low_complexity Low_complexity 1 49 0 198 0 0 0 chr11 50280999 50281021 -100502532 + (CGGGGG)n Simple_repeat Simple_repeat 3 24 0 2239 92 17 7 chr11 50283842 50284136 -100499417 - AluSx SINE Alu -15 297 1 2116 114 14 0 chr11 50285796 50286086 -100497467 - AluSx SINE Alu -18 294 1 377 333 35 0 chr11 50286756 50286870 -100496683 + L2 LINE L2 3150 3267 -5 464 216 128 84 chr11 50287459 50287612 -100495941 + MER46C DNA MER2_type 71 241 -97 2329 144 76 107 chr11 50287612 50287799 -100495754 - MER44D DNA MER2_type -1882 605 414 2075 119 0 14 chr11 50287799 50288092 -100495461 - AluSx SINE Alu -23 289 1 2329 144 76 107 chr11 50288092 50288472 -100495081 - MER44D DNA MER2_type -2073 414 1 464 216 128 84 chr11 50288472 50288568 -100494985 + MER46C DNA MER2_type 241 331 -7 477 245 64 94 chr11 50289198 50289431 -100494122 - L1ME4a LINE L1 -23 6098 5873 2207 84 20 10 chr11 50289877 50290174 -100493379 - AluY SINE Alu -11 300 1 2188 116 3 0 chr11 50290286 50290580 -100492973 + AluSg SINE Alu 1 295 -15 200 57 0 29 chr11 50291041 50291076 -100492477 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 2100 133 0 7 chr11 50291076 50291362 -100492191 - AluSx SINE Alu -28 284 1 516 213 201 0 chr11 50291429 50291580 -100491973 + MER5A DNA MER1_type 4 189 0 2294 95 30 0 chr11 50292346 50292641 -100490912 - AluSq SINE Alu -9 304 1 2655 55 0 0 chr11 50293588 50293899 -100489654 - AluY SINE Alu 0 311 1 1718 138 6 75 chr11 50293899 50294090 -100489463 - AluSx SINE Alu -7 305 143 2211 111 0 3 chr11 50294090 50294379 -100489174 - AluSx SINE Alu -24 288 1 1718 138 6 75 chr11 50294379 50294513 -100489040 - AluSx SINE Alu -169 143 1 2412 82 7 0 chr11 50297556 50297860 -100485693 + AluSg SINE Alu 1 306 -4 1942 157 7 13 chr11 50297916 50298222 -100485331 - AluSx SINE Alu -8 304 1 2410 82 10 3 chr11 50298295 50298598 -100484955 - AluY SINE Alu -6 305 1 880 213 6 0 chr11 50298658 50298827 -100484726 + FRAM SINE Alu 4 173 -3 667 281 0 12 chr11 50302192 50302359 -100481194 + MIR3 SINE MIR 17 181 -27 315 242 152 10 chr11 50302711 50302810 -100480743 + MIR3 SINE MIR 81 193 -15 2298 116 0 3 chr11 50303811 50304114 -100479439 - AluSx SINE Alu -10 302 1 2316 106 6 0 chr11 50304579 50304890 -100478663 + AluSp SINE Alu 1 313 0 2334 96 0 19 chr11 50304893 50305205 -100478348 + AluSx SINE Alu 1 306 -6 419 228 41 0 chr11 50305217 50305340 -100478213 + L1ME4a LINE L1 5734 5861 -260 337 240 182 0 chr11 50305384 50305505 -100478048 + L1ME4a LINE L1 5962 6104 -17 2025 147 0 3 chr11 50305511 50305823 -100477730 - AluJb SINE Alu -1 311 1 238 279 101 13 chr11 50307019 50307098 -100476455 - L2 LINE L2 -1 3271 3186 1759 163 42 26 chr11 50307266 50307573 -100475980 - AluJb SINE Alu 0 312 1 2445 93 0 0 chr11 50307947 50308257 -100475296 - AluY SINE Alu -1 310 1 2565 77 0 0 chr11 50308289 50308599 -100474954 - AluY SINE Alu -1 310 1 12438 170 87 66 chr11 50308954 50310135 -100473418 - L1 LINE L1 -753 6414 5260 1316 174 0 5 chr11 50310135 50310342 -100473211 - AluJo SINE Alu -106 206 1 12438 170 87 66 chr11 50310342 50310707 -100472846 - L1 LINE L1 -1907 5260 4904 2373 90 7 3 chr11 50310707 50311017 -100472536 - AluSx SINE Alu -1 311 1 2224 125 0 0 chr11 50311017 50311305 -100472248 - AluSx SINE Alu -19 293 5 12438 170 87 66 chr11 50311305 50311629 -100471924 - L1 LINE L1 -2263 4904 4588 2255 113 0 17 chr11 50311629 50311929 -100471624 - AluSq SINE Alu -18 295 1 12438 170 87 66 chr11 50311929 50312711 -100470842 - L1 LINE L1 -2579 4588 3824 2364 103 0 10 chr11 50312711 50313023 -100470530 - AluSg SINE Alu -1 309 1 12438 170 87 66 chr11 50313023 50313738 -100469815 - L1 LINE L1 -3343 3824 3126 2450 74 13 10 chr11 50313738 50314048 -100469505 - AluY SINE Alu 0 311 1 12438 170 87 66 chr11 50314048 50314118 -100469435 - L1 LINE L1 -4041 3126 3059 2271 107 7 7 chr11 50314118 50314418 -100469135 - AluSx SINE Alu -12 300 1 12438 170 87 66 chr11 50314418 50314736 -100468817 - L1 LINE L1 -4108 3059 2749 2197 115 7 3 chr11 50314736 50315040 -100468513 - AluSp SINE Alu -8 305 1 12438 170 87 66 chr11 50315040 50317361 -100466192 - L1 LINE L1 -4418 2749 1 1566 184 0 83 chr11 50317398 50317724 -100465829 - AluJo SINE Alu -13 299 1 265 152 0 0 chr11 50318154 50318200 -100465353 - AluY SINE Alu -2 306 261 2097 112 0 4 chr11 50318202 50318479 -100465074 - AluY SINE Alu -35 276 1 780 304 45 12 chr11 50318572 50318819 -100464734 - MIR SINE MIR -6 256 2 2433 104 0 0 chr11 50320344 50320652 -100462901 - AluSx SINE Alu -4 308 1 189 0 0 0 chr11 50320672 50320693 -100462860 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2223 114 0 7 chr11 50320696 50320994 -100462559 - AluSx SINE Alu -16 296 1 2261 118 0 3 chr11 50321134 50321438 -100462115 + AluSq SINE Alu 1 303 -10 824 243 16 0 chr11 50322556 50322745 -100460808 + Charlie1a DNA MER1_type 56 247 -1208 1315 116 0 11 chr11 50322745 50322935 -100460618 - AluSg/x SINE Alu 0 310 123 1995 127 3 37 chr11 50322946 50323245 -100460308 - AluSq SINE Alu -24 289 1 2413 156 48 58 chr11 50323262 50323812 -100459741 + Charlie1a DNA MER1_type 252 795 -1966 1693 125 3 66 chr11 50323812 50324116 -100459437 - AluSx SINE Alu -7 305 21 2413 156 48 58 chr11 50324116 50324218 -100459335 + Charlie1a DNA MER1_type 795 897 -558 1314 113 42 47 chr11 50324238 50324261 -100459292 + AluJo SINE Alu 86 108 -204 2297 94 0 0 chr11 50324261 50324568 -100458985 - AluSg SINE Alu -3 307 1 1314 113 42 47 chr11 50324568 50324757 -100458796 + AluJo SINE Alu 108 297 -15 698 163 0 41 chr11 50324762 50324885 -100458668 - FLAM_C SINE Alu -15 118 1 409 120 27 0 chr11 50324887 50324962 -100458591 + Charlie1a DNA MER1_type 885 961 -494 959 198 0 0 chr11 50324968 50325130 -100458423 + FRAM SINE Alu 1 159 -17 1756 174 76 11 chr11 50325131 50325592 -100457961 + Charlie1a DNA MER1_type 964 1454 -1 2131 131 0 0 chr11 50325973 50326285 -100457268 - AluSx SINE Alu 0 312 1 2272 88 3 16 chr11 50326339 50326646 -100456907 - AluSx SINE Alu -9 303 1 205 279 0 0 chr11 50326657 50326700 -100456853 + (CA)n Simple_repeat Simple_repeat 2 44 0 1003 283 59 37 chr11 50326704 50326887 -100456666 - L1MC4a LINE L1 -1641 6167 5990 2303 93 0 6 chr11 50326887 50327199 -100456354 - AluSg SINE Alu 0 310 1 1003 283 59 37 chr11 50327199 50327242 -100456311 - L1MC4a LINE L1 -1818 5990 5949 2101 138 3 0 chr11 50327242 50327554 -100455999 - AluSq SINE Alu 0 313 1 1003 283 59 37 chr11 50327554 50327898 -100455655 - L1MC4a LINE L1 -1859 5949 5583 519 263 112 23 chr11 50327879 50328138 -100455415 - L1MC5 LINE L1 -420 7541 7260 * 365 373 47 12 chr11 50328213 50328266 -100455287 - L1MC4a LINE L1 -931 5215 5165 2212 102 3 10 chr11 50328266 50328580 -100454973 - AluSx SINE Alu 0 312 1 365 373 47 12 chr11 50328580 50328695 -100454858 - L1MC4a LINE L1 -981 5165 5041 2366 109 0 0 chr11 50329306 50329618 -100453935 - AluSx SINE Alu 0 312 1 21 0 0 0 chr11 50329622 50329643 -100453910 + AT_rich Low_complexity Low_complexity 1 21 0 2074 137 0 3 chr11 50329643 50329943 -100453610 - AluSx SINE Alu -13 299 1 498 298 71 104 chr11 50329992 50330215 -100453338 - L1ME4a LINE L1 -17 6104 5896 2160 91 3 16 chr11 50330215 50330523 -100453030 + AluSx SINE Alu 1 304 -8 498 298 71 104 chr11 50330523 50330665 -100452888 - L1ME4a LINE L1 -225 5896 5751 2204 111 0 10 chr11 50330686 50330992 -100452561 + AluSx SINE Alu 2 304 -8 994 116 7 0 chr11 50331016 50331154 -100452399 + AluJo SINE Alu 1 139 -173 1497 206 4 0 chr11 50331160 50331458 -100452095 + AluJb SINE Alu 9 307 0 349 313 31 0 chr11 50331465 50331628 -100451925 - L1ME4a LINE L1 -420 5701 5534 205 289 22 67 chr11 50331751 50331841 -100451712 - MIR SINE MIR -94 114 29 568 348 46 30 chr11 50331924 50332229 -100451324 - L2 LINE L2 -2 3270 2961 511 312 132 21 chr11 50332202 50332542 -100451011 - L2 LINE L2 -737 2577 2200 * 792 258 77 28 chr11 50332554 50332802 -100450751 - MIR SINE MIR -2 260 1 2239 74 3 17 chr11 50332838 50333134 -100450419 + AluY SINE Alu 1 292 -19 27 0 0 0 chr11 50333257 50333284 -100450269 + AT_rich Low_complexity Low_complexity 1 27 0 2359 93 0 0 chr11 50333468 50333768 -100449785 + AluSx SINE Alu 1 300 -12 827 176 50 0 chr11 50333779 50333938 -100449615 + AluJb SINE Alu 144 310 -2 196 104 62 0 chr11 50335498 50335546 -100448007 + (CGTG)n Simple_repeat Simple_repeat 1 51 0 368 344 113 9 chr11 50336528 50336740 -100446813 + MIR SINE MIR 2 235 -27 195 296 99 0 chr11 50341402 50341473 -100442080 + MIR3 SINE MIR 120 197 -11 2129 117 7 0 chr11 50341570 50341870 -100441683 - AluSx SINE Alu -10 302 1 339 250 40 20 chr11 50344740 50344840 -100438713 - MIR SINE MIR -147 115 14 2145 118 0 7 chr11 50345078 50345375 -100438178 - AluSx SINE Alu -17 295 1 2330 86 3 9 chr11 50345824 50346139 -100437414 - AluSp SINE Alu 0 313 1 2318 89 3 10 chr11 50346718 50347032 -100436521 + AluSx SINE Alu 1 312 0 219 104 10 25 chr11 50347314 50347360 -100436193 - MIR SINE MIR -62 146 99 383 298 121 0 chr11 50347522 50347663 -100435890 - MIR SINE MIR -4 258 101 361 291 111 7 chr11 50347652 50347859 -100435694 + MIR SINE MIR 25 260 -2 * 242 119 0 51 chr11 50348467 50348526 -100435027 - FLAM_A SINE Alu 0 133 78 200 345 0 0 chr11 50350093 50350148 -100433405 - MIR3 SINE MIR -35 173 119 459 185 138 39 chr11 50350402 50350532 -100433021 - L1ME2 LINE L1 0 6164 6022 920 157 5 0 chr11 50350609 50350834 -100432719 + (CA)n Simple_repeat Simple_repeat 1 226 0 2385 77 0 10 chr11 50350897 50351209 -100432344 + AluY SINE Alu 3 311 0 557 280 83 0 chr11 50351264 50351432 -100432121 - MIR SINE MIR -61 201 20 313 231 3 42 chr11 50352182 50352470 -100431083 + (TCTCTG)n Simple_repeat Simple_repeat 1 276 0 241 336 77 0 chr11 50352885 50352989 -100430564 - MIR SINE MIR -70 192 81 2098 109 3 0 chr11 50354264 50354584 -100428969 - AluSx SINE Alu 0 312 18 276 255 57 38 chr11 50354877 50354983 -100428570 - MIR SINE MIR -59 149 42 657 240 64 0 chr11 50355115 50355286 -100428267 + MIR SINE MIR 33 214 -48 2205 97 3 0 chr11 50355314 50355602 -100427951 - AluSx SINE Alu -23 289 1 277 324 56 19 chr11 50356020 50356128 -100427425 - L2 LINE L2 -5 3267 3156 398 280 37 0 chr11 50357793 50357900 -100425653 - MIR SINE MIR -106 156 46 2019 113 7 3 chr11 50359136 50359420 -100424133 + AluSx SINE Alu 1 285 -27 25 0 0 0 chr11 50359420 50359445 -100424108 + AT_rich Low_complexity Low_complexity 1 25 0 253 319 88 0 chr11 50359495 50359586 -100423967 - MER91B DNA MER1_type -10 180 82 350 259 17 60 chr11 50359794 50359910 -100423643 + MIR3 SINE MIR 82 192 -16 2220 87 0 10 chr11 50360639 50360938 -100422615 - AluY SINE Alu -15 296 1 186 304 0 0 chr11 50361598 50361667 -100421886 - L2 LINE L2 -292 2980 2912 633 291 11 5 chr11 50362090 50362275 -100421278 - MIR SINE MIR -38 224 39 206 348 67 15 chr11 50362646 50362781 -100420772 - MIR3 SINE MIR -3 205 64 249 288 15 0 chr11 50363470 50363536 -100420017 + tRNA-Met-i tRNA tRNA 1 67 -8 369 313 182 17 chr11 50363541 50363717 -100419836 + MIR SINE MIR 2 206 -56 1549 128 7 97 chr11 50363724 50364022 -100419531 + AluJo SINE Alu 1 271 -41 56 39 0 0 chr11 50364022 50364099 -100419454 + AT_rich Low_complexity Low_complexity 1 77 0 2199 117 3 0 chr11 50364100 50364408 -100419145 + AluJb SINE Alu 1 309 -3 404 256 38 30 chr11 50364878 50365011 -100418542 + MIR3 SINE MIR 39 172 -36 252 0 0 0 chr11 50365059 50365087 -100418466 + (CAT)n Simple_repeat Simple_repeat 3 30 0 201 207 0 35 chr11 50365554 50365612 -100417941 + G-rich Low_complexity Low_complexity 2 57 0 232 233 17 0 chr11 50366199 50366319 -100417234 + (CA)n Simple_repeat Simple_repeat 1 122 0 441 278 17 6 chr11 50366330 50366506 -100417047 + (CA)n Simple_repeat Simple_repeat 2 179 0 256 260 14 0 chr11 50366522 50366595 -100416958 + (CA)n Simple_repeat Simple_repeat 1 74 0 393 300 6 6 chr11 50366630 50366810 -100416743 + (CA)n Simple_repeat Simple_repeat 1 180 0 421 277 17 6 chr11 50366868 50367045 -100416508 + (CA)n Simple_repeat Simple_repeat 1 179 0 328 291 24 0 chr11 50367207 50367334 -100416219 + (CA)n Simple_repeat Simple_repeat 1 130 0 424 288 11 11 chr11 50367352 50367529 -100416024 + (CA)n Simple_repeat Simple_repeat 1 177 0 187 240 19 13 chr11 50367609 50367763 -100415790 + (CA)n Simple_repeat Simple_repeat 1 155 0 241 265 35 29 chr11 50367953 50368415 -100415138 + (CTCA)n Simple_repeat Simple_repeat 4 174 0 425 276 0 24 chr11 50368010 50368083 -100415470 + (CA)n Simple_repeat Simple_repeat 1 74 -92 2304 75 10 0 chr11 50368083 50368376 -100415177 - AluSq SINE Alu -17 296 1 425 276 0 24 chr11 50368376 50368472 -100415081 + (CA)n Simple_repeat Simple_repeat 74 166 0 329 327 0 0 chr11 50368497 50368610 -100414943 + (CA)n Simple_repeat Simple_repeat 1 113 0 440 294 0 22 chr11 50368631 50368815 -100414738 + (CA)n Simple_repeat Simple_repeat 1 180 0 257 319 0 32 chr11 50368860 50369045 -100414508 + (CA)n Simple_repeat Simple_repeat 1 179 0 377 257 6 39 chr11 50369075 50369254 -100414299 + (CA)n Simple_repeat Simple_repeat 1 173 0 337 305 43 12 chr11 50369672 50369836 -100413717 + MER91A DNA MER1_type 23 191 -5 355 304 146 6 chr11 50370659 50370817 -100412736 - MIR SINE MIR -70 192 13 515 286 163 10 chr11 50370829 50371025 -100412528 + MIR SINE MIR 31 256 -6 2170 82 7 3 chr11 50371057 50371348 -100412205 + AluSc SINE Alu 1 292 -17 2435 64 3 3 chr11 50371351 50371662 -100411891 + AluY SINE Alu 1 311 0 785 265 24 11 chr11 50372516 50372754 -100410799 + MIR SINE MIR 26 262 0 22 0 0 0 chr11 50372757 50372779 -100410774 + AT_rich Low_complexity Low_complexity 1 22 0 1592 176 8 8 chr11 50372812 50373079 -100410474 + AluJo SINE Alu 12 278 -34 2246 108 7 0 chr11 50373079 50373386 -100410167 - AluSg SINE Alu -1 309 1 21 36 0 0 chr11 50373439 50373467 -100410086 + AT_rich Low_complexity Low_complexity 1 28 0 422 160 191 0 chr11 50373618 50373712 -100409841 + L2 LINE L2 3202 3313 0 2304 85 0 3 chr11 50373751 50374046 -100409507 + AluSx SINE Alu 1 294 -18 203 77 0 26 chr11 50374297 50374336 -100409217 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 2015 133 0 7 chr11 50374336 50374622 -100408931 - AluSx SINE Alu -28 284 1 482 232 232 0 chr11 50374689 50374840 -100408713 + MER5A DNA MER1_type 4 189 0 1950 137 30 0 chr11 50375602 50375901 -100407652 - AluSq SINE Alu -5 308 1 2476 68 0 0 chr11 50376848 50377159 -100406394 - AluY SINE Alu 0 311 1 1641 138 6 75 chr11 50377159 50377350 -100406203 - AluSx SINE Alu -7 305 143 2128 111 0 3 chr11 50377350 50377639 -100405914 - AluSx SINE Alu -24 288 1 1641 138 6 75 chr11 50377639 50377773 -100405780 - AluSx SINE Alu -169 143 1 2220 86 10 3 chr11 50380816 50381120 -100402433 + AluSg SINE Alu 1 306 -4 1867 151 7 13 chr11 50381176 50381480 -100402073 - AluSg SINE Alu -8 302 1 555 182 18 0 chr11 50381732 50381842 -100401711 + MER3 DNA MER1_type 2 113 -96 2245 86 17 3 chr11 50381855 50382156 -100401397 + AluSp SINE Alu 2 306 -7 26 0 0 0 chr11 50382157 50382183 -100401370 + AT_rich Low_complexity Low_complexity 1 26 0 2060 132 0 10 chr11 50382712 50383015 -100400538 + AluSx SINE Alu 1 300 -12 2632 164 46 85 chr11 50383335 50383448 -100400105 + L1MB2 LINE L1 5479 5595 -576 2232 92 16 0 chr11 50383448 50383752 -100399801 - AluY SINE Alu -2 309 1 2632 164 46 85 chr11 50383752 50383783 -100399770 + L1MB2 LINE L1 5595 5626 -545 2110 120 3 0 chr11 50383783 50384082 -100399471 + AluSx SINE Alu 1 300 -12 2632 164 46 85 chr11 50384082 50384657 -100398896 + L1MB2 LINE L1 5626 6171 0 2184 100 6 19 chr11 50384663 50384974 -100398579 + AluSx SINE Alu 1 307 -5 632 241 65 42 chr11 50384984 50385200 -100398353 + L2 LINE L2 2501 2721 -593 215 231 0 19 chr11 50385230 50385282 -100398271 + GA-rich Low_complexity Low_complexity 2 52 0 477 240 0 109 chr11 50385283 50385558 -100397995 + HAL1 LINE L1 1453 1697 -810 747 294 102 0 chr11 50385559 50385794 -100397759 - MIR SINE MIR -1 261 3 2133 117 3 0 chr11 50385820 50386119 -100397434 + AluSx SINE Alu 3 302 -10 2208 105 7 0 chr11 50386119 50386425 -100397128 + AluSg SINE Alu 1 308 -2 380 280 56 30 chr11 50386431 50386663 -100396890 + HAL1 LINE L1 2071 2308 -199 205 196 22 0 chr11 50386664 50386710 -100396843 + L2 LINE L2 3265 3311 -2 2229 103 3 0 chr11 50386776 50387086 -100396467 + AluY SINE Alu 1 311 0 336 308 113 63 chr11 50387146 50387367 -100396186 + HAL1b LINE L1 1115 1346 -2 1789 149 3 7 chr11 50387377 50387659 -100395894 + AluJb SINE Alu 1 281 -31 24 0 0 0 chr11 50387829 50387853 -100395700 + AT_rich Low_complexity Low_complexity 1 24 0 263 153 69 28 chr11 50387971 50388043 -100395510 + AluSq/x SINE Alu 64 138 -165 1076 191 164 19 chr11 50388043 50388305 -100395248 + AluSx SINE Alu 3 302 0 391 241 87 0 chr11 50388383 50388508 -100395045 + MLT1A2 LTR MaLR 239 363 -11 1350 237 48 43 chr11 50388520 50388946 -100394607 - L1MC4a LINE L1 -894 6914 6511 1864 125 7 10 chr11 50388946 50389241 -100394312 + AluY SINE Alu 1 294 -17 1350 237 48 43 chr11 50389241 50389286 -100394267 - L1MC4a LINE L1 -1297 6511 6468 747 294 102 0 chr11 50389417 50389652 -100393901 - MIR SINE MIR -1 261 3 2219 97 3 3 chr11 50389678 50389976 -100393577 + AluSq SINE Alu 3 300 -13 499 315 175 11 chr11 50389992 50390398 -100393155 + L2 LINE L2 2670 3185 -128 1779 107 64 14 chr11 50390398 50390679 -100392874 - AluSc SINE Alu -14 295 1 499 315 175 11 chr11 50390679 50390811 -100392742 + L2 LINE L2 3185 3294 -19 201 224 0 0 chr11 50390853 50390911 -100392642 + (TGGG)n Simple_repeat Simple_repeat 2 59 0 559 283 19 7 chr11 50391072 50391238 -100392315 - MIR SINE MIR -57 205 38 2276 73 0 3 chr11 50391359 50391648 -100391905 + AluSg SINE Alu 1 288 -22 2161 123 7 0 chr11 50391654 50391955 -100391598 + AluSx SINE Alu 1 303 -9 935 239 68 0 chr11 50393250 50393455 -100390098 + MER20 DNA MER1_type 1 219 0 330 241 167 9 chr11 50393553 50393661 -100389892 + MIR SINE MIR 16 140 -68 254 184 18 55 chr11 50394811 50394974 -100388579 + CT-rich Low_complexity Low_complexity 3 159 0 320 295 29 35 chr11 50395831 50396004 -100387549 + (CCCCAG)n Simple_repeat Simple_repeat 2 173 0 538 358 0 0 chr11 50397570 50397749 -100385804 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 593 219 7 0 chr11 50397792 50397947 -100385606 + (TCCA)n Simple_repeat Simple_repeat 1 156 0 1310 146 21 44 chr11 50397960 50398315 -100385238 - L1PB4 LINE L1 -237 5919 5670 894 182 0 0 chr11 50398319 50398597 -100384956 + (TCCA)n Simple_repeat Simple_repeat 1 278 0 426 212 0 0 chr11 50398616 50398715 -100384838 + (TCCA)n Simple_repeat Simple_repeat 3 101 0 197 260 117 65 chr11 50398722 50398799 -100384754 - L2 LINE L2 -33 3239 3159 239 0 32 0 chr11 50398840 50398871 -100384682 + (TTG)n Simple_repeat Simple_repeat 2 33 0 227 299 0 31 chr11 50399332 50399371 -100384182 + (TTCA)n Simple_repeat Simple_repeat 3 42 -54 2222 101 23 3 chr11 50399371 50400282 -100383271 - AluSq SINE Alu 0 917 1 3529 118 30 43 chr11 50399412 50399771 -100383782 - L1PB4 LINE L1 -5 6151 5789 186 71 0 0 chr11 50399771 50399799 -100383754 + (TA)n Simple_repeat Simple_repeat 1 28 0 3529 118 30 43 chr11 50399799 50400284 -100383269 - L1PB4 LINE L1 -367 5789 5619 1736 181 0 13 chr11 50400284 50400583 -100382970 - AluJb SINE Alu -17 295 1 227 299 0 31 chr11 50400583 50400660 -100382893 + (TTCA)n Simple_repeat Simple_repeat 43 96 0 3529 118 30 43 chr11 50400583 50400644 -100382909 - L1PB4 LINE L1 -537 5619 5559 281 202 48 24 chr11 50401542 50401626 -100381927 - MIR SINE MIR -82 126 41 289 288 29 34 chr11 50401652 50401900 -100381653 + GA-rich Low_complexity Low_complexity 1 246 0 433 299 94 83 chr11 50402146 50402328 -100381225 - L1ME4a LINE L1 0 6121 5943 2533 45 0 16 chr11 50402328 50402639 -100380914 + AluY SINE Alu 1 306 -5 433 299 94 83 chr11 50402639 50402750 -100380803 - L1ME4a LINE L1 -178 5943 5821 1411 87 10 0 chr11 50402750 50402956 -100380597 - L1MA3 LINE L1 0 6305 6098 433 299 94 83 chr11 50402956 50403012 -100380541 - L1ME4a LINE L1 -300 5821 5767 409 293 88 100 chr11 50403005 50403085 -100380468 - L1ME3A LINE L1 0 6170 6091 * 2169 88 3 19 chr11 50403085 50403393 -100380160 + AluY SINE Alu 1 303 -8 409 293 88 100 chr11 50403393 50403454 -100380099 - L1ME3A LINE L1 -79 6091 6031 2430 67 0 10 chr11 50403454 50403768 -100379785 + AluY SINE Alu 1 311 0 409 293 88 100 chr11 50403768 50403864 -100379689 - L1ME3A LINE L1 -139 6031 5935 2070 125 0 3 chr11 50403864 50404169 -100379384 - AluSg SINE Alu 0 310 7 233 182 73 0 chr11 50404290 50404345 -100379208 - L1ME3A LINE L1 -320 5850 5792 2163 119 0 0 chr11 50404345 50404648 -100378905 - AluSx SINE Alu -8 304 2 788 133 8 8 chr11 50404690 50404810 -100378743 - AluJb SINE Alu -25 287 168 452 224 112 20 chr11 50404810 50404962 -100378591 - L1ME3A LINE L1 -2040 5768 5603 1897 136 0 34 chr11 50404962 50404997 -100378556 - AluSx SINE Alu 0 312 277 216 0 0 0 chr11 50404997 50405021 -100378532 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 1897 136 0 34 chr11 50405021 50405308 -100378245 - AluSx SINE Alu -35 277 1 767 163 0 0 chr11 50405312 50405435 -100378118 - FLAM_C SINE Alu -6 127 5 517 218 8 88 chr11 50405630 50405787 -100377766 - MER31B LTR ERV1 -303 163 53 2725 16 0 0 chr11 50405787 50406093 -100377460 + AluYa5 SINE Alu 1 306 -5 517 218 8 88 chr11 50406093 50406140 -100377413 - MER31B LTR ERV1 -413 53 4 216 367 44 11 chr11 50406167 50406257 -100377296 - L3 LINE CR1 -441 1136 1044 375 288 60 50 chr11 50406301 50406526 -100377027 + MIR SINE MIR 32 259 -3 2050 143 0 6 chr11 50406577 50406891 -100376662 + AluSx SINE Alu 1 312 0 2185 39 25 3 chr11 50407148 50407431 -100376122 - AluY SINE Alu -22 289 1 193 294 59 0 chr11 50407593 50407661 -100375892 - L3 LINE CR1 -571 1006 935 23 33 0 0 chr11 50408429 50408459 -100375094 + AT_rich Low_complexity Low_complexity 1 30 0 280 253 135 41 chr11 50408793 50408963 -100374590 - MIR SINE MIR -76 186 1 451 259 92 6 chr11 50410453 50410606 -100372947 - MIR SINE MIR -65 143 23 2210 86 10 17 chr11 50410606 50410908 -100372645 - AluSp SINE Alu -13 300 1 451 259 92 6 chr11 50410908 50410932 -100372621 - MIR SINE MIR -185 23 2 2266 66 0 20 chr11 50410992 50411295 -100372258 - AluY SINE Alu -14 297 1 2276 93 0 6 chr11 50412070 50412381 -100371172 + AluSc SINE Alu 1 309 0 2124 125 3 0 chr11 50412461 50412758 -100370795 + AluSx SINE Alu 1 298 -14 2321 73 10 26 chr11 50413137 50413450 -100370103 - AluSx SINE Alu -4 308 1 229 283 135 29 chr11 50413765 50413935 -100369618 - MIR3 SINE MIR -72 136 3 353 268 92 72 chr11 50414487 50414529 -100369024 + MIR SINE MIR 82 122 -140 2488 62 0 0 chr11 50414529 50414834 -100368719 - AluY SINE Alu -6 305 1 353 268 92 72 chr11 50414834 50414944 -100368609 + MIR SINE MIR 122 237 -25 1885 135 23 3 chr11 50416929 50417233 -100366320 - AluSg SINE Alu 0 310 1 2041 119 17 3 chr11 50417393 50417686 -100365867 + AluSg SINE Alu 3 299 -11 661 301 81 43 chr11 50420019 50420437 -100363116 - L2 LINE L2 -3 3269 2836 2038 99 60 0 chr11 50421070 50421354 -100362199 + AluSx SINE Alu 1 301 -11 2059 75 0 4 chr11 50421354 50421619 -100361934 + AluSc SINE Alu 39 302 -7 237 65 0 0 chr11 50422046 50422077 -100361476 + (CAGGC)n Simple_repeat Simple_repeat 4 34 0 319 266 137 22 chr11 50422655 50422742 -100360811 + MIR SINE MIR 59 135 -127 2208 102 0 0 chr11 50422742 50423036 -100360517 - AluSx SINE Alu -5 307 14 319 266 137 22 chr11 50423036 50423087 -100360466 + MIR SINE MIR 135 213 -49 215 254 99 42 chr11 50423162 50423233 -100360320 - MIR3 SINE MIR -22 186 112 * 428 261 16 88 chr11 50423204 50423405 -100360148 + MIR SINE MIR 10 188 -20 255 280 53 0 chr11 50423437 50423512 -100360041 + L2 LINE L2 3191 3269 -3 418 264 123 26 chr11 50424850 50425005 -100358548 + MIR SINE MIR 23 192 -70 205 244 111 33 chr11 50425171 50425261 -100358292 + MIR SINE MIR 51 147 -115 223 288 0 36 chr11 50425459 50425570 -100357983 + GA-rich Low_complexity Low_complexity 4 110 0 49 18 0 0 chr11 50425776 50425832 -100357721 + GC_rich Low_complexity Low_complexity 1 56 0 251 288 13 4 chr11 50426494 50426667 -100356886 + G-rich Low_complexity Low_complexity 1 174 0 283 89 0 0 chr11 50426682 50426727 -100356826 + AluSp/q SINE Alu 252 296 -7 * 482 168 187 0 chr11 50426715 50426822 -100356731 - MER3 DNA MER1_type -65 144 18 2196 92 14 0 chr11 50426851 50427155 -100356398 - AluSq SINE Alu 0 308 1 225 347 53 11 chr11 50427245 50427340 -100356213 - MIR SINE MIR -136 126 28 1901 98 4 8 chr11 50427820 50428074 -100355479 - AluSg SINE Alu -14 296 44 362 270 63 0 chr11 50428171 50428282 -100355271 + MIR SINE MIR 57 174 -88 946 130 0 0 chr11 50428318 50428449 -100355104 + FLAM_C SINE Alu 1 131 -12 2405 57 0 17 chr11 50428454 50428753 -100354800 + AluY SINE Alu 1 294 -17 2364 115 0 0 chr11 50429044 50429349 -100354204 - AluSx SINE Alu -7 305 1 591 217 85 0 chr11 50429689 50429818 -100353735 - FLAM_A SINE Alu -2 140 1 2232 98 3 0 chr11 50429821 50430106 -100353447 - AluSp SINE Alu -3 310 25 340 233 104 68 chr11 50430141 50430304 -100353249 + L1MC5 LINE L1 7759 7927 -34 389 184 0 13 chr11 50430324 50430400 -100353153 + L2 LINE L2 2542 2616 -698 2130 123 0 0 chr11 50430425 50430702 -100352851 - AluSx SINE Alu -27 285 9 190 357 0 0 chr11 50430706 50430762 -100352791 + L2 LINE L2 2606 2661 -653 1217 239 51 53 chr11 50430762 50431230 -100352323 + MLT2B1 LTR ERVL 1 467 -53 321 48 0 0 chr11 50431232 50431274 -100352279 - MADE1 DNA Mariner -2 78 37 2130 115 13 13 chr11 50431279 50431591 -100351962 + AluSp SINE Alu 1 312 -1 1063 204 14 169 chr11 50431657 50431848 -100351705 - L1MD3 LINE L1 -1 8040 7821 1571 189 0 7 chr11 50431848 50432118 -100351435 + AluJo SINE Alu 1 268 -44 1063 204 14 169 chr11 50432118 50432132 -100351421 - L1MD3 LINE L1 -220 7821 7806 2048 134 35 0 chr11 50432132 50432422 -100351131 + AluSx SINE Alu 3 302 -10 1063 204 14 169 chr11 50432422 50432528 -100351025 - L1MD3 LINE L1 -235 7806 7685 2288 118 3 0 chr11 50432528 50432834 -100350719 + AluSx SINE Alu 1 307 -5 1063 204 14 169 chr11 50432834 50432974 -100350579 - L1MD3 LINE L1 -356 7685 7525 2299 74 0 7 chr11 50432974 50433257 -100350296 + AluSx SINE Alu 1 281 -31 207 0 0 0 chr11 50433260 50433283 -100350270 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1063 204 14 169 chr11 50433283 50433440 -100350113 - L1MD3 LINE L1 -327 7714 7534 875 237 156 9 chr11 50433443 50433792 -100349761 + L2 LINE L2 2665 3053 -260 656 158 42 0 chr11 50433792 50433912 -100349641 - AluJb SINE Alu -12 300 176 253 100 40 0 chr11 50434331 50434381 -100349172 + (TA)n Simple_repeat Simple_repeat 2 53 0 553 224 0 0 chr11 50434577 50434675 -100348878 + FLAM_A SINE Alu 1 98 -44 36 40 0 0 chr11 50434675 50434725 -100348828 + AT_rich Low_complexity Low_complexity 1 50 0 2332 110 10 0 chr11 50434729 50435038 -100348515 + AluSx SINE Alu 1 312 0 2086 116 35 0 chr11 50436267 50436552 -100347001 + AluSx SINE Alu 1 295 -17 2321 97 3 0 chr11 50436554 50436863 -100346690 + AluSg SINE Alu 1 310 0 2000 109 33 4 chr11 50436871 50437169 -100346384 + AluSg SINE Alu 1 306 0 554 194 155 0 chr11 50437310 50437439 -100346114 - MIR SINE MIR -25 237 89 899 150 86 0 chr11 50437471 50437611 -100345942 + FRAM SINE Alu 4 155 -11 236 75 0 25 chr11 50437724 50437753 -100345800 + (GA)n Simple_repeat Simple_repeat 2 31 -9 2206 125 20 3 chr11 50437753 50438056 -100345497 + AluSx SINE Alu 1 308 -4 236 75 0 25 chr11 50438056 50438066 -100345487 + (GA)n Simple_repeat Simple_repeat 31 40 0 2261 104 7 0 chr11 50438155 50438453 -100345100 - AluSq SINE Alu -13 300 1 2145 142 7 0 chr11 50438453 50438756 -100344797 - AluJb SINE Alu -5 307 3 1200 100 0 58 chr11 50438770 50438960 -100344593 - AluSg/x SINE Alu 0 312 134 2170 114 10 0 chr11 50438960 50439257 -100344296 - AluSx SINE Alu -3 309 10 1491 207 13 3 chr11 50439565 50439870 -100343683 + AluSx SINE Alu 1 308 -4 2319 50 4 4 chr11 50439941 50440219 -100343334 - AluY SINE Alu -15 296 19 286 283 100 61 chr11 50440634 50440814 -100342739 + MER5A DNA MER1_type 1 187 -2 569 293 59 40 chr11 50441266 50441519 -100342034 - MIR SINE MIR 0 262 5 2283 117 0 0 chr11 50441583 50441882 -100341671 - AluSg SINE Alu -11 299 1 239 132 59 0 chr11 50441952 50442020 -100341533 + (TCCA)n Simple_repeat Simple_repeat 3 74 0 1665 143 0 12 chr11 50442465 50442743 -100340810 + AluSq SINE Alu 43 317 0 292 276 92 0 chr11 50442861 50442937 -100340616 + L2 LINE L2 3186 3268 -4 239 341 0 0 chr11 50442949 50443037 -100340516 + (TGGA)n Simple_repeat Simple_repeat 3 90 0 282 56 0 0 chr11 50443083 50443119 -100340434 + (TGGA)n Simple_repeat Simple_repeat 1 36 0 2357 114 0 0 chr11 50443160 50443458 -100340095 + AluSx SINE Alu 1 298 -14 521 192 7 93 chr11 50443483 50443634 -100339919 + L1M3 LINE L1 5451 5588 -583 2368 63 0 17 chr11 50443754 50444054 -100339499 - AluY SINE Alu -16 295 1 1630 100 0 5 chr11 50444829 50445039 -100338514 + AluSc SINE Alu 1 209 -100 837 142 0 0 chr11 50445040 50445153 -100338400 + AluSg/x SINE Alu 78 190 -122 492 174 0 0 chr11 50445153 50445239 -100338314 + AluS SINE Alu 226 311 -1 407 241 87 0 chr11 50445311 50445436 -100338117 + MLT1A2 LTR MaLR 239 363 -11 1514 221 159 0 chr11 50445464 50445872 -100337681 - L1MC4 LINE L1 -1066 6976 6504 1900 123 4 0 chr11 50445874 50446135 -100337418 + AluY SINE Alu 1 262 -49 1626 163 8 0 chr11 50447281 50447533 -100336020 - AluJo SINE Alu -13 299 46 185 274 196 20 chr11 50448708 50448810 -100334743 + L2 LINE L2 2607 2726 -588 1870 115 27 50 chr11 50450133 50450471 -100333082 - L1MB7 LINE L1 -19 6165 5836 775 169 7 7 chr11 50450652 50450788 -100332765 + AluJo SINE Alu 1 136 -176 483 129 349 23 chr11 50450790 50450922 -100332631 + MER3 DNA MER1_type 35 209 0 303 275 140 3 chr11 50451984 50452155 -100331398 - MER5C DNA MER1_type -79 245 8 1866 124 0 25 chr11 50452166 50452441 -100331112 - AluSx SINE Alu -2 310 43 2086 115 3 14 chr11 50452959 50453255 -100330298 - AluSx SINE Alu -19 293 1 1868 162 0 10 chr11 50453421 50453717 -100329836 + AluJb SINE Alu 1 293 -19 261 363 53 9 chr11 50453861 50453974 -100329579 - L2 LINE L2 -14 3258 3141 2160 109 20 0 chr11 50454243 50454537 -100329016 + AluSx SINE Alu 1 300 -12 2328 105 3 3 chr11 50454539 50454844 -100328709 + AluSx SINE Alu 1 305 -7 2182 124 7 0 chr11 50454976 50455275 -100328278 + AluSq SINE Alu 1 301 -12 2389 99 10 0 chr11 50455465 50455768 -100327785 + AluSq SINE Alu 1 306 -7 2135 130 7 0 chr11 50459216 50459508 -100324045 + AluSx SINE Alu 1 294 -18 352 147 0 67 chr11 50459905 50459980 -100323573 + AluJ/FRAM SINE Alu 233 302 0 2184 106 7 3 chr11 50459985 50460278 -100323275 + AluSc SINE Alu 1 294 -15 2126 111 10 0 chr11 50460283 50460571 -100322982 + AluSc SINE Alu 3 293 -16 1670 175 45 7 chr11 50460686 50460978 -100322575 + AluJb SINE Alu 1 303 -9 392 241 46 0 chr11 50461005 50461113 -100322440 - MIR SINE MIR -72 190 78 2440 75 3 25 chr11 50461179 50461499 -100322054 + AluSp SINE Alu 1 313 0 310 152 0 0 chr11 50461533 50461579 -100321974 - MIR SINE MIR -193 69 24 1612 179 64 7 chr11 50461826 50462106 -100321447 - AluJo SINE Alu -16 296 1 324 217 239 43 chr11 50462503 50462595 -100320958 + L2 LINE L2 3163 3272 0 1686 152 7 19 chr11 50462885 50463155 -100320398 - AluJb SINE Alu -23 289 23 2145 121 7 23 chr11 50463902 50464233 -100319320 - AluSx SINE Alu 0 312 2 2140 113 3 55 chr11 50464787 50465116 -100318437 + AluSx SINE Alu 1 312 0 207 0 0 0 chr11 50465196 50465219 -100318334 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 1320 149 133 12 chr11 50465220 50465461 -100318092 - AluSg1 SINE Alu -37 272 3 2426 88 10 0 chr11 50465829 50466126 -100317427 + AluSx SINE Alu 1 300 -12 2291 87 0 3 chr11 50469490 50469778 -100313775 + AluY SINE Alu 1 287 -24 417 258 105 79 chr11 50469783 50469924 -100313629 + MIR SINE MIR 28 179 -83 1793 168 34 7 chr11 50469924 50470216 -100313337 + AluJo SINE Alu 1 300 -12 417 258 105 79 chr11 50470216 50470303 -100313250 + MIR SINE MIR 179 262 0 827 231 84 44 chr11 50471645 50471966 -100311587 - L2 LINE L2 -108 3205 2872 2296 100 27 0 chr11 50472019 50472319 -100311234 + AluSg SINE Alu 1 308 -2 676 226 113 5 chr11 50472416 50472602 -100310951 - L1ME1 LINE L1 -19 6147 5942 237 215 116 66 chr11 50473237 50473358 -100310195 + MIR SINE MIR 86 212 -50 1725 163 36 4 chr11 50473383 50473659 -100309894 + AluJo SINE Alu 14 298 -14 189 0 0 0 chr11 50474237 50474258 -100309295 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 306 115 0 0 chr11 50475884 50475936 -100307617 + (A)n Simple_repeat Simple_repeat 1 52 0 231 204 0 0 chr11 50477470 50477524 -100306029 + T-rich Low_complexity Low_complexity 1 54 0 244 43 21 43 chr11 50478108 50478155 -100305398 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 437 350 88 5 chr11 50481202 50481419 -100302134 - MIR SINE MIR -16 246 12 296 98 0 0 chr11 50481824 50481865 -100301688 - LTR23 LTR ERV1 -77 360 320 1615 175 14 7 chr11 50481930 50482222 -100301331 - AluJb SINE Alu -18 294 1 1482 150 83 0 chr11 50482338 50482604 -100300949 + AluJb SINE Alu 1 288 -24 2065 83 38 0 chr11 50482846 50483136 -100300417 + AluY SINE Alu 1 301 -10 2040 123 0 0 chr11 50483223 50483515 -100300038 - AluSp SINE Alu -21 292 1 1727 135 73 7 chr11 50483550 50483839 -100299714 - AluSx SINE Alu -4 308 1 1815 141 7 3 chr11 50484292 50484582 -100298971 + AluSx SINE Alu 1 291 -21 1644 159 35 21 chr11 50484767 50485057 -100298496 + AluSx SINE Alu 6 299 -13 1060 179 107 32 chr11 50485057 50485337 -100298216 - L1MB7 LINE L1 -12 6172 5872 786 107 0 0 chr11 50485637 50485740 -100297813 + AluSp SINE Alu 18 120 -193 2032 105 3 3 chr11 50485840 50486126 -100297427 - AluSq SINE Alu -27 286 1 241 296 28 19 chr11 50486126 50486234 -100297319 - L1MB7 LINE L1 -1916 5892 5784 2171 101 3 0 chr11 50486385 50486681 -100296872 - AluSc SINE Alu -12 297 1 2077 133 0 3 chr11 50487013 50487322 -100296231 - AluSq SINE Alu -5 308 1 319 226 0 12 chr11 50487330 50487414 -100296139 - Charlie8 DNA MER1_type -2269 148 66 425 263 79 79 chr11 50487838 50487870 -100295683 + MIR SINE MIR 3 34 -228 2093 110 0 19 chr11 50487870 50488178 -100295375 + AluSx SINE Alu 1 302 -10 425 263 79 79 chr11 50488178 50488335 -100295218 + MIR SINE MIR 33 192 -70 1467 108 103 0 chr11 50488494 50488717 -100294836 + AluSx SINE Alu 1 246 -66 641 160 0 0 chr11 50488717 50488817 -100294736 - LTR12 LTR ERV1 -2 712 613 298 218 35 23 chr11 50488817 50488904 -100294649 - LTR30 LTR ERV1 -79 643 556 1543 127 96 11 chr11 50488935 50489195 -100294358 - LTR12 LTR ERV1 -432 282 1 321 102 0 37 chr11 50489195 50489264 -100294289 + AluSp/q SINE Alu 246 303 0 291 206 65 136 chr11 50489889 50490053 -100293500 - L2 LINE L2 -17 3296 3145 1852 131 7 3 chr11 50490053 50490343 -100293210 + AluJb SINE Alu 1 291 -21 291 206 65 136 chr11 50490343 50490362 -100293191 - L2 LINE L2 -168 3145 3126 1443 176 54 47 chr11 50490465 50490596 -100292957 + L1MB7 LINE L1 5556 5684 -494 1857 138 3 33 chr11 50490596 50490901 -100292652 - AluJo SINE Alu -16 296 1 1443 176 54 47 chr11 50490901 50491156 -100292397 + L1MB7 LINE L1 5684 5945 -233 1563 154 21 91 chr11 50491159 50491356 -100292197 - MLT1B LTR MaLR -34 356 147 2116 103 7 0 chr11 50491356 50491648 -100291905 + AluSg SINE Alu 1 294 -16 1563 154 21 91 chr11 50491648 50491664 -100291889 - MLT1B LTR MaLR -243 147 131 1836 118 11 14 chr11 50491664 50491943 -100291610 + AluSx SINE Alu 13 290 -22 1563 154 21 91 chr11 50491943 50492111 -100291442 - MLT1B LTR MaLR -259 131 1 635 208 28 21 chr11 50492115 50492259 -100291294 + L1MB7 LINE L1 5997 6141 -43 294 337 0 0 chr11 50492520 50492618 -100290935 - MIR SINE MIR -32 230 133 221 252 8 134 chr11 50494588 50494715 -100288838 - MIR SINE MIR -63 145 35 366 314 44 0 chr11 50494755 50494892 -100288661 + MIR SINE MIR 61 203 -59 * 794 255 113 52 chr11 50494873 50495281 -100288272 - L2 LINE L2 -6 3307 2875 2188 72 4 0 chr11 50495404 50495682 -100287871 - AluSq SINE Alu -34 279 1 291 315 36 18 chr11 50495765 50495930 -100287623 - L2 LINE L2 -768 2546 2379 560 169 0 0 chr11 50495966 50496055 -100287498 + AluJ/FLAM SINE Alu 1 89 -223 1600 179 7 3 chr11 50496092 50496377 -100287176 + AluJo SINE Alu 14 299 -13 268 265 10 41 chr11 50496377 50496465 -100287088 - L1MC3 LINE L1 -1067 6718 6641 698 347 87 31 chr11 50496465 50496681 -100286872 - L1MC4a LINE L1 -1230 6578 6375 2239 74 6 16 chr11 50496681 50496992 -100286561 - AluSc SINE Alu -1 308 1 698 347 87 31 chr11 50496992 50497065 -100286488 - L1MC4a LINE L1 -1433 6375 6308 2151 77 3 27 chr11 50497065 50497365 -100286188 - AluY SINE Alu -18 293 1 698 347 87 31 chr11 50497365 50497419 -100286134 - L1MC4a LINE L1 -1500 6308 6258 2115 125 3 3 chr11 50497419 50497730 -100285823 - AluY SINE Alu 0 311 1 1800 179 0 3 chr11 50497738 50498051 -100285502 - AluJo SINE Alu 0 312 1 698 347 87 31 chr11 50498051 50498146 -100285407 - L1MC4a LINE L1 -1556 6252 6104 194 298 21 32 chr11 50498146 50498240 -100285313 - L2 LINE L2 -927 2387 2295 210 256 24 85 chr11 50498241 50498323 -100285230 - L2 LINE L2 -1540 1774 1698 1840 155 13 3 chr11 50498347 50498656 -100284897 - AluJo SINE Alu 0 312 1 580 260 211 28 chr11 50498657 50498984 -100284569 - L2 LINE L2 -1603 1711 1325 464 222 46 9 chr11 50499203 50499311 -100284242 - L2 LINE L2 0 3313 3202 201 204 20 0 chr11 50499315 50499364 -100284189 + L2 LINE L2 2934 2983 -330 749 167 132 7 chr11 50499780 50499924 -100283629 - AluJo SINE Alu -149 163 2 370 218 79 10 chr11 50500095 50500196 -100283357 + MIR SINE MIR 21 128 -134 210 260 26 26 chr11 50500833 50500910 -100282643 - MIR SINE MIR -142 120 44 1716 156 0 36 chr11 50501398 50501517 -100282036 + AluJb SINE Alu 1 123 -189 222 37 0 0 chr11 50501517 50501544 -100282009 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 2020 125 0 0 chr11 50501546 50501834 -100281719 - AluSq SINE Alu -25 288 1 1716 156 0 36 chr11 50501834 50502018 -100281535 + AluJb SINE Alu 124 296 -16 348 200 130 10 chr11 50502081 50502181 -100281372 - MIR SINE MIR -77 185 74 411 173 0 0 chr11 50502362 50502472 -100281081 + G-rich Low_complexity Low_complexity 1 110 0 1243 170 107 26 chr11 50502606 50502877 -100280676 - AluJb SINE Alu -19 293 1 1852 122 35 31 chr11 50503035 50503354 -100280199 + MER2 DNA MER2_type 22 341 -4 529 316 48 38 chr11 50503356 50503760 -100279793 - L1ME3A LINE L1 -256 5908 5498 361 299 18 32 chr11 50503863 50504080 -100279473 - L1ME3A LINE L1 -774 5468 5255 232 317 0 24 chr11 50504794 50504876 -100278677 + MIR SINE MIR 111 190 -72 483 161 0 21 chr11 50505058 50505151 -100278402 - MER69 DNA AcHobo -2 2524 2434 2028 92 7 11 chr11 50505158 50505480 -100278073 + AluSx SINE Alu 1 321 0 2134 95 6 49 chr11 50505480 50505805 -100277748 + AluSx SINE Alu 2 312 0 269 266 51 13 chr11 50505809 50505888 -100277665 - MER69 DNA AcHobo -1130 96 15 397 243 150 14 chr11 50506225 50506365 -100277188 + MIR SINE MIR 19 177 -85 366 269 49 76 chr11 50506885 50506931 -100276622 + MIR SINE MIR 30 76 -175 2207 106 0 22 chr11 50506931 50507251 -100276302 - AluSq SINE Alu 0 313 1 366 269 49 76 chr11 50507251 50507387 -100276166 + MIR SINE MIR 76 214 -37 2132 92 7 0 chr11 50507780 50508103 -100275450 - AluSx SINE Alu 0 325 1 2053 100 3 35 chr11 50508103 50508413 -100275140 - AluSx SINE Alu -12 300 1 209 297 0 22 chr11 50511542 50511633 -100271920 + C-rich Low_complexity Low_complexity 2 90 0 1675 161 0 18 chr11 50512321 50512606 -100270947 + AluJo SINE Alu 1 280 -32 197 253 110 0 chr11 50512935 50513026 -100270527 + MIR SINE MIR 42 142 -66 471 303 142 21 chr11 50513028 50513309 -100270244 - L2 LINE L2 -6 3266 2952 225 330 28 9 chr11 50513299 50513405 -100270148 + L2 LINE L2 2910 3017 -255 * 317 254 131 33 chr11 50513881 50514003 -100269550 + MIR SINE MIR 16 149 -113 529 296 67 6 chr11 50514405 50514584 -100268969 - MIR SINE MIR -60 202 13 374 335 71 6 chr11 50514614 50514784 -100268769 - MIR SINE MIR -12 250 70 233 339 69 0 chr11 50515510 50515640 -100267913 + MIR SINE MIR 61 199 -63 512 281 154 35 chr11 50515877 50516305 -100267248 + L2 LINE L2 2755 3219 -94 2024 131 20 0 chr11 50516948 50517254 -100266299 - AluSq SINE Alu -1 312 1 1638 164 42 3 chr11 50517298 50517444 -100266109 - AluJb SINE Alu -14 298 159 185 0 40 0 chr11 50517444 50517469 -100266084 + (CCA)n Simple_repeat Simple_repeat 1 26 0 1638 164 42 3 chr11 50517469 50517609 -100265944 - AluJb SINE Alu -153 159 1 763 163 0 0 chr11 50517653 50517776 -100265777 + FLAM_C SINE Alu 5 127 -6 2157 122 0 0 chr11 50517780 50518083 -100265470 + AluSq SINE Alu 1 303 -10 858 243 16 0 chr11 50519201 50519390 -100264163 + Charlie1a DNA MER1_type 56 247 -1208 1246 116 0 11 chr11 50519390 50519580 -100263973 - AluSg/x SINE Alu 0 312 125 1875 127 3 37 chr11 50519591 50519890 -100263663 - AluSq SINE Alu -24 289 1 2598 156 48 58 chr11 50519907 50520457 -100263096 + Charlie1a DNA MER1_type 252 795 -1966 1664 125 3 66 chr11 50520457 50520761 -100262792 - AluSx SINE Alu -7 305 21 2598 156 48 58 chr11 50520761 50520863 -100262690 + Charlie1a DNA MER1_type 795 897 -558 2063 105 10 3 chr11 50520906 50521211 -100262342 - AluSg SINE Alu -3 307 1 291 315 36 18 chr11 50521294 50521459 -100262094 - L2 LINE L2 -768 2546 2379 560 169 0 0 chr11 50521495 50521584 -100261969 + AluJ/FLAM SINE Alu 1 89 -223 1635 180 7 0 chr11 50521621 50521905 -100261648 + AluJo SINE Alu 14 299 -13 268 265 10 41 chr11 50521905 50521993 -100261560 - L1MC3 LINE L1 -1067 6718 6641 706 339 88 38 chr11 50521993 50522209 -100261344 - L1MC4a LINE L1 -1230 6578 6374 2220 71 10 16 chr11 50522209 50522519 -100261034 - AluSc SINE Alu -1 308 1 706 339 88 38 chr11 50522519 50522594 -100260959 - L1MC4a LINE L1 -1434 6374 6304 2182 70 3 27 chr11 50522594 50522892 -100260661 - AluY SINE Alu -20 291 1 706 339 88 38 chr11 50522892 50522946 -100260607 - L1MC4a LINE L1 -1504 6304 6254 2115 125 3 3 chr11 50522946 50523257 -100260296 - AluY SINE Alu 0 311 1 1800 179 0 3 chr11 50523265 50523578 -100259975 - AluJo SINE Alu 0 312 1 706 339 88 38 chr11 50523578 50523673 -100259880 - L1MC4a LINE L1 -1560 6248 6104 194 298 21 32 chr11 50523673 50523767 -100259786 - L2 LINE L2 -927 2387 2295 210 256 24 85 chr11 50523768 50523850 -100259703 - L2 LINE L2 -1540 1774 1698 1840 155 13 3 chr11 50523874 50524183 -100259370 - AluJo SINE Alu 0 312 1 580 260 211 28 chr11 50524184 50524511 -100259042 - L2 LINE L2 -1603 1711 1325 464 222 46 9 chr11 50524730 50524838 -100258715 - L2 LINE L2 0 3313 3202 201 204 20 0 chr11 50524842 50524891 -100258662 + L2 LINE L2 2934 2983 -330 749 167 132 7 chr11 50525312 50525456 -100258097 - AluJo SINE Alu -149 163 2 379 218 79 10 chr11 50525627 50525728 -100257825 + MIR SINE MIR 21 128 -134 224 260 26 26 chr11 50526367 50526444 -100257109 - MIR SINE MIR -142 120 44 1754 156 0 36 chr11 50526932 50527051 -100256502 + AluJb SINE Alu 1 123 -189 222 37 0 0 chr11 50527051 50527078 -100256475 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 2052 125 0 0 chr11 50527080 50527368 -100256185 - AluSq SINE Alu -25 288 1 1754 156 0 36 chr11 50527368 50527552 -100256001 + AluJb SINE Alu 124 296 -16 368 244 134 8 chr11 50527596 50527715 -100255838 - MIR SINE MIR -55 207 74 422 98 0 0 chr11 50527767 50527828 -100255725 + U6 snRNA snRNA 1 61 -46 1962 105 83 0 chr11 50527844 50528121 -100255432 + AluSx SINE Alu 1 300 -12 2265 91 0 0 chr11 50528344 50528642 -100254911 - AluSq SINE Alu -15 298 1 295 361 0 30 chr11 50528724 50528857 -100254696 - MIR3 SINE MIR -42 166 38 1654 122 0 0 chr11 50529211 50529448 -100254105 + AluSq SINE Alu 1 237 -76 1546 164 20 17 chr11 50530358 50530563 -100252990 - MLT1A1 LTR MaLR -3 362 154 2164 122 0 0 chr11 50530563 50530866 -100252687 - AluSx SINE Alu -8 304 2 1546 164 20 17 chr11 50530866 50530953 -100252600 - MLT1A1 LTR MaLR -211 154 69 1830 154 3 17 chr11 50531020 50531318 -100252235 + AluJb SINE Alu 7 300 -12 2133 110 0 7 chr11 50531323 50531622 -100251931 + AluSx SINE Alu 1 297 -15 2156 104 0 16 chr11 50532106 50532414 -100251139 + AluSx SINE Alu 1 303 -9 1102 117 7 0 chr11 50532414 50532568 -100250985 + AluSq SINE Alu 134 288 -25 42 0 0 0 chr11 50532864 50532906 -100250647 + GC_rich Low_complexity Low_complexity 1 42 0 299 237 102 14 chr11 50533587 50533764 -100249789 - MIR SINE MIR -4 258 13 1934 147 0 3 chr11 50534466 50534766 -100248787 + AluJb SINE Alu 6 304 -8 566 115 0 0 chr11 50535080 50535158 -100248395 + AluS SINE Alu 1 78 -235 362 118 0 0 chr11 50585158 50585209 -100198344 - Alu SINE Alu -249 51 1 1271 184 13 21 chr11 50585210 50585444 -100198109 + AluJo SINE Alu 80 311 -1 478 231 0 56 chr11 50585455 50585598 -100197955 + L1MB8 LINE L1 5929 6063 -115 2123 129 3 10 chr11 50585600 50585910 -100197643 + AluSx SINE Alu 1 308 -4 2115 114 55 0 chr11 50585934 50586223 -100197330 + AluSq SINE Alu 1 305 -8 1062 83 8 0 chr11 50586240 50586372 -100197181 + AluSx SINE Alu 1 133 -180 2206 115 13 0 chr11 50586393 50586697 -100196856 + AluSq SINE Alu 1 308 -5 2159 112 30 0 chr11 50586713 50587009 -100196544 + AluSx SINE Alu 1 305 -7 393 39 0 0 chr11 50587884 50587935 -100195618 + (TG)n Simple_repeat Simple_repeat 1 51 0 23 33 0 0 chr11 50589013 50589043 -100194510 + GC_rich Low_complexity Low_complexity 1 30 0 296 247 0 0 chr11 50590112 50590185 -100193368 - MER5A DNA MER1_type -6 183 111 1290 109 0 16 chr11 50590292 50590504 -100193049 + AluSx SINE Alu 117 310 0 1978 114 44 0 chr11 50590506 50590813 -100192740 + AluSx SINE Alu 1 319 0 1511 188 3 38 chr11 50590813 50591105 -100192448 - AluJo SINE Alu -30 282 1 349 242 223 19 chr11 50591107 50591209 -100192344 - L1ME LINE L1 -297 5824 5744 1720 203 3 3 chr11 50591209 50591520 -100192033 + AluJo SINE Alu 1 311 -1 349 242 223 19 chr11 50591520 50591574 -100191979 - L1ME LINE L1 -377 5744 5636 2162 112 31 3 chr11 50591674 50591968 -100191585 - AluSx SINE Alu -10 302 1 21 0 0 0 chr11 50591977 50591998 -100191555 + AT_rich Low_complexity Low_complexity 1 21 0 198 326 225 0 chr11 50592392 50592481 -100191072 - L2 LINE L2 -9 3263 3155 900 237 5 100 chr11 50592547 50592730 -100190823 - L2 LINE L2 0 3313 3181 2398 77 0 10 chr11 50592730 50593030 -100190523 + AluSx SINE Alu 1 297 -15 900 237 5 100 chr11 50593030 50593217 -100190336 - L2 LINE L2 -132 3181 2978 207 0 0 0 chr11 50593760 50593783 -100189770 + (CAA)n Simple_repeat Simple_repeat 2 24 0 30 0 0 0 chr11 50593866 50593896 -100189657 + AT_rich Low_complexity Low_complexity 1 30 0 1287 170 0 5 chr11 50594363 50594569 -100188984 + AluJo SINE Alu 87 291 -21 2066 134 13 0 chr11 50594569 50594890 -100188663 + AluSx SINE Alu 1 312 0 2001 119 7 7 chr11 50594892 50595192 -100188361 + AluSc SINE Alu 1 300 0 2315 94 17 0 chr11 50595629 50595926 -100187627 - AluSx SINE Alu -8 304 3 293 274 19 47 chr11 50596061 50596167 -100187386 + L3 LINE CR1 1462 1564 -13 2064 145 0 19 chr11 50596807 50596942 -100186611 + AluSx SINE Alu 1 137 -175 2020 132 3 7 chr11 50596942 50597230 -100186323 + AluSx SINE Alu 1 287 -25 213 65 0 0 chr11 50597230 50597261 -100186292 + (CATA)n Simple_repeat Simple_repeat 2 32 0 2064 145 0 19 chr11 50597261 50597434 -100186119 + AluSx SINE Alu 135 304 -8 2389 106 0 3 chr11 50597620 50597932 -100185621 - AluSq SINE Alu -2 311 1 2211 88 3 7 chr11 50598047 50598356 -100185197 + AluY SINE Alu 1 308 0 193 167 33 44 chr11 50599148 50599238 -100184315 + (CAGGG)n Simple_repeat Simple_repeat 1 89 0 1804 160 25 14 chr11 50600350 50600632 -100182921 + AluJb SINE Alu 4 288 -24 2458 78 13 0 chr11 50600640 50600949 -100182604 + AluSp SINE Alu 1 313 0 1992 140 14 3 chr11 50601154 50601447 -100182106 + AluSx SINE Alu 1 296 -16 2315 107 3 0 chr11 50601448 50601747 -100181806 + AluSp SINE Alu 1 300 -13 1403 144 5 14 chr11 50603075 50603290 -100180263 + AluJb SINE Alu 1 213 -99 1750 91 14 5 chr11 50603390 50603611 -100179942 - AluSx SINE Alu -89 223 1 2438 65 0 3 chr11 50603631 50603922 -100179631 - AluSc SINE Alu -19 290 1 465 240 132 0 chr11 50604472 50604650 -100178903 + MIR SINE MIR 7 206 -56 232 213 25 33 chr11 50605136 50605208 -100178345 + MER91 DNA MER1_type 122 189 -1 306 209 0 30 chr11 50605342 50605409 -100178144 - MIR SINE MIR -61 147 83 182 298 0 0 chr11 50605602 50605649 -100177904 - L3b LINE CR1 -246 1337 1291 183 184 0 0 chr11 50606661 50606699 -100176854 + G-rich Low_complexity Low_complexity 4 41 0 1956 91 12 8 chr11 50608527 50608781 -100174772 + AluSc SINE Alu 1 255 -54 216 300 29 14 chr11 50608840 50608910 -100174643 + MIR SINE MIR 8 78 -184 472 278 101 54 chr11 50609107 50609180 -100174373 - LTR16C LTR ERVL -71 420 352 2440 53 3 20 chr11 50609180 50609482 -100174071 + AluY SINE Alu 1 297 -14 472 278 101 54 chr11 50609482 50609725 -100173828 - LTR16C LTR ERVL -139 352 89 2248 100 34 3 chr11 50609849 50610140 -100173413 + AluSx SINE Alu 1 300 -12 632 132 9 0 chr11 50610140 50610246 -100173307 + MLT1D LTR MaLR 397 503 -2 2206 105 0 27 chr11 50610270 50610565 -100172988 + AluSg SINE Alu 1 287 -23 2350 95 23 0 chr11 50610785 50611091 -100172462 + AluSp SINE Alu 1 313 0 2100 133 0 22 chr11 50611465 50611782 -100171771 - AluSx SINE Alu -1 311 2 697 170 58 29 chr11 50612050 50612221 -100171332 - LTR49 LTR ERV1 -3 592 417 233 143 0 0 chr11 50612216 50612258 -100171295 - LTR29 LTR ERV1 -198 424 383 * 511 137 29 240 chr11 50612263 50612467 -100171086 - AluJb SINE Alu -23 289 129 1219 135 0 0 chr11 50612772 50612965 -100170588 + AluSg/x SINE Alu 119 311 0 525 186 0 0 chr11 50612965 50613051 -100170502 - AluJ/FLAM SINE Alu -225 87 2 2041 152 42 85 chr11 50613054 50613107 -100170446 - L1MB7 LINE L1 -249 5935 5881 2006 148 3 13 chr11 50613107 50613412 -100170141 - AluJb SINE Alu -10 302 1 2424 83 3 0 chr11 50613412 50613711 -100169842 - AluSp SINE Alu -12 301 1 2041 152 42 85 chr11 50613711 50614183 -100169370 - L1MB7 LINE L1 -301 5883 5432 2545 63 3 0 chr11 50614190 50614492 -100169061 - AluY SINE Alu -7 304 2 2462 84 0 0 chr11 50614501 50614799 -100168754 - AluY SINE Alu -13 298 1 358 177 94 0 chr11 50614801 50614897 -100168656 - L1MD3 LINE L1 -6 7989 7885 1203 161 48 22 chr11 50614907 50615180 -100168373 - L1MB7 LINE L1 -10 6174 5895 690 137 17 0 chr11 50615234 50615351 -100168202 - AluSg/x SINE Alu -13 297 179 1775 158 41 3 chr11 50615353 50615645 -100167908 - AluJb SINE Alu -9 303 1 2259 124 0 0 chr11 50615645 50615943 -100167610 - AluSx SINE Alu -13 299 1 1448 159 46 0 chr11 50616059 50616298 -100167255 + AluJo SINE Alu 47 296 -16 1713 121 113 4 chr11 50616298 50616555 -100166998 + AluSc SINE Alu 1 285 -24 274 64 140 6 chr11 50616555 50616712 -100166841 + (TA)n Simple_repeat Simple_repeat 1 178 0 207 48 48 24 chr11 50616778 50616820 -100166733 + (TTATA)n Simple_repeat Simple_repeat 2 44 0 401 267 68 59 chr11 50616849 50617174 -100166379 - L1MCa LINE L1 -4223 2203 1948 324 283 17 58 chr11 50617069 50617189 -100166364 + L1MC4 LINE L1 6589 6703 -1339 * 190 0 67 0 chr11 50617203 50617233 -100166320 + (TA)n Simple_repeat Simple_repeat 2 33 0 2238 113 0 3 chr11 50617506 50617799 -100165754 + AluSq SINE Alu 1 292 -21 1337 143 5 9 chr11 50617829 50618039 -100165514 + 7SLRNA srpRNA srpRNA 1 209 -111 2214 84 3 7 chr11 50618534 50618830 -100164723 - AluSg SINE Alu -15 295 1 1219 116 0 33 chr11 50619882 50620063 -100163490 - AluSx SINE Alu -137 175 1 28 61 0 0 chr11 50620192 50620241 -100163312 + AT_rich Low_complexity Low_complexity 1 49 0 2576 60 0 0 chr11 50620770 50621071 -100162482 - AluY SINE Alu -10 301 1 1549 179 36 29 chr11 50621220 50621528 -100162025 + AluJo SINE Alu 1 310 -2 2249 113 0 7 chr11 50621886 50622187 -100161366 + AluSc SINE Alu 1 299 -10 1961 137 23 20 chr11 50622650 50622956 -100160597 - AluSx SINE Alu -5 307 1 204 97 0 0 chr11 50623031 50623062 -100160491 + (TCTA)n Simple_repeat Simple_repeat 1 31 0 1744 163 22 0 chr11 50623062 50623339 -100160214 - AluSx SINE Alu -23 289 7 2130 139 0 0 chr11 50623370 50623673 -100159880 + AluY SINE Alu 1 303 -8 475 264 173 10 chr11 50623847 50623892 -100159661 - MIR SINE MIR -9 253 217 1823 163 0 3 chr11 50623892 50624174 -100159379 - AluJb SINE Alu -18 294 14 475 264 173 10 chr11 50624174 50624336 -100159217 - MIR SINE MIR -45 217 12 307 324 100 76 chr11 50624987 50625317 -100158236 + L2 LINE L2 2935 3272 0 * 542 341 19 41 chr11 50625285 50625446 -100158107 - MIR SINE MIR -1 261 107 2333 98 0 10 chr11 50625446 50625751 -100157802 + AluSc SINE Alu 1 302 -7 542 341 19 41 chr11 50625751 50625856 -100157697 - MIR SINE MIR -155 107 1 216 0 0 0 chr11 50626827 50626851 -100156702 + (TG)n Simple_repeat Simple_repeat 2 25 0 360 0 0 0 chr11 50626873 50626913 -100156640 + (TG)n Simple_repeat Simple_repeat 2 41 0 200 39 0 0 chr11 50626942 50626968 -100156585 - MIR SINE MIR -156 52 27 665 283 97 8 chr11 50627043 50627280 -100156273 + MIR SINE MIR 5 262 0 2181 97 3 3 chr11 50629920 50630219 -100153334 + AluSx SINE Alu 1 299 -13 692 113 0 0 chr11 50630308 50630405 -100153148 + U5 snRNA snRNA 1 97 -19 2111 66 70 0 chr11 50630451 50630737 -100152816 + AluY SINE Alu 1 306 -5 1784 147 20 0 chr11 50630746 50631038 -100152515 + AluJb SINE Alu 2 299 -13 1544 149 66 21 chr11 50631939 50632101 -100151452 - AluSx SINE Alu -10 302 120 1605 124 105 0 chr11 50632101 50632368 -100151185 - AluSx SINE Alu -17 295 1 1544 149 66 21 chr11 50632368 50632494 -100151059 - AluSx SINE Alu -192 120 1 965 150 0 0 chr11 50632552 50632705 -100150848 + AluSg/x SINE Alu 156 308 -2 729 179 0 30 chr11 50632705 50632839 -100150714 + AluJo/FRAM SINE Alu 138 267 -45 1565 142 0 34 chr11 50632867 50633135 -100150418 - AluJo SINE Alu -15 297 39 830 191 12 30 chr11 50633135 50633303 -100150250 - AluJo SINE Alu -1 301 137 212 209 149 0 chr11 50633494 50633561 -100149992 - MIR3 SINE MIR -48 160 84 2032 110 0 0 chr11 50633677 50633958 -100149595 - AluSq SINE Alu -32 281 1 662 151 40 24 chr11 50634195 50634321 -100149232 - AluJo SINE Alu -176 136 9 1170 162 5 15 chr11 50634366 50634570 -100148983 - AluJb SINE Alu -15 297 96 1862 75 0 20 chr11 50634692 50634946 -100148607 - AluSq SINE Alu -7 306 58 246 229 21 0 chr11 50635353 50635401 -100148152 - L3 LINE CR1 -10 1567 1519 230 279 16 0 chr11 50635354 50635415 -100148138 - MIR3 SINE MIR -15 193 132 * 1841 128 35 0 chr11 50635434 50635722 -100147831 - AluSp SINE Alu -13 300 3 725 191 0 29 chr11 50635806 50635974 -100147579 - FLAM_C SINE Alu 0 133 1 759 167 0 0 chr11 50636161 50636281 -100147272 + AluJb SINE Alu 2 121 -191 2105 95 14 0 chr11 50638926 50639222 -100144331 - AluSx SINE Alu -11 301 2 207 0 0 0 chr11 50639225 50639248 -100144305 + (TTG)n Simple_repeat Simple_repeat 2 24 0 562 114 143 9 chr11 50639250 50639355 -100144198 - AluSg/x SINE Alu -31 281 163 2292 73 0 10 chr11 50639516 50639816 -100143737 - AluSx SINE Alu -13 299 3 1171 121 6 0 chr11 50639837 50640010 -100143543 - AluSp SINE Alu 0 313 140 2469 63 0 0 chr11 50640013 50640314 -100143239 - AluY SINE Alu -10 301 1 432 272 172 6 chr11 50640772 50640941 -100142612 - MIR SINE MIR -10 252 56 782 241 238 19 chr11 50641136 50641506 -100142047 - MLT1K LTR MaLR -33 555 105 272 306 94 69 chr11 50641780 50641940 -100141613 - MIR SINE MIR -85 177 14 1052 301 138 58 chr11 50642798 50643703 -100139850 + L3 LINE CR1 2 979 -598 2338 62 13 3 chr11 50643763 50644071 -100139482 + AluY SINE Alu 1 311 0 972 227 107 103 chr11 50644143 50644675 -100138878 - L1MC4a LINE L1 -1835 5973 5440 1797 138 0 39 chr11 50644692 50645003 -100138550 - AluJb SINE Alu -13 299 1 2185 107 3 0 chr11 50645105 50645414 -100138139 + AluSp SINE Alu 1 310 -3 223 342 44 35 chr11 50645415 50645529 -100138024 + L2 LINE L2 2804 2918 -396 384 265 300 0 chr11 50645531 50645731 -100137822 - MIR SINE MIR -1 261 2 375 172 0 0 chr11 50645917 50645981 -100137572 - AluJb SINE Alu -49 253 190 2383 50 17 0 chr11 50646036 50646336 -100137217 + AluY SINE Alu 1 305 -6 781 189 0 0 chr11 50646552 50646684 -100136869 + FLAM_A SINE Alu 2 133 0 2001 88 0 88 chr11 50646691 50647031 -100136522 + AluSg SINE Alu 1 310 0 690 253 237 108 chr11 50647437 50647497 -100136056 - MLT1G3 LTR MaLR 0 595 544 2233 98 0 10 chr11 50647497 50647804 -100135749 + AluSx SINE Alu 1 304 -8 690 253 237 108 chr11 50647804 50647978 -100135575 - MLT1G3 LTR MaLR -51 544 394 479 232 125 65 chr11 50647978 50648093 -100135460 + MER45A DNA AcHobo 1 131 -1450 1871 136 0 17 chr11 50648093 50648256 -100135297 - AluJb SINE Alu -16 296 139 2289 88 3 0 chr11 50648256 50648553 -100135000 - AluSx SINE Alu -14 298 1 1871 136 0 17 chr11 50648553 50648690 -100134863 - AluJb SINE Alu -173 139 1 479 232 125 65 chr11 50648690 50648742 -100134811 + MER45A DNA AcHobo 131 178 0 690 253 237 108 chr11 50648742 50648984 -100134569 - MLT1G3 LTR MaLR -201 394 1 2152 76 17 17 chr11 50650326 50650627 -100132926 - AluSq SINE Alu -12 301 1 378 206 0 93 chr11 50651195 50651302 -100132251 - MIR3 SINE MIR -25 183 87 477 314 30 30 chr11 50651357 50651526 -100132027 + MIR SINE MIR 4 172 -90 260 218 141 28 chr11 50651625 50651767 -100131786 - L1ME4a LINE L1 -3 6118 5961 1275 162 77 8 chr11 50651850 50652109 -100131444 - AluSx SINE Alu -33 279 3 312 198 11 44 chr11 50652121 50652212 -100131341 - AluSq/x SINE Alu -172 131 44 3732 181 36 71 chr11 50652215 50652245 -100131308 - L1MB3 LINE L1 -1 6182 6152 2277 102 0 0 chr11 50652245 50652548 -100131005 + AluSg SINE Alu 1 303 -7 3732 181 36 71 chr11 50652548 50653474 -100130079 - L1MB3 LINE L1 -31 6152 5195 2269 96 0 0 chr11 50653474 50653776 -100129777 - AluSx SINE Alu -10 302 1 3732 181 36 71 chr11 50653776 50654052 -100129501 - L1MB3 LINE L1 -988 5195 4995 2095 104 0 0 chr11 50654052 50654341 -100129212 - AluSg SINE Alu -21 289 1 1675 182 12 24 chr11 50654341 50654660 -100128893 - L1MB4 LINE L1 -39 6141 5825 2207 86 30 0 chr11 50654660 50654964 -100128589 - AluSq SINE Alu 0 313 1 1675 182 12 24 chr11 50654964 50654984 -100128569 - L1MB4 LINE L1 -355 5825 5806 2090 119 7 7 chr11 50655266 50655576 -100127977 - AluSp SINE Alu -2 311 2 1692 109 140 0 chr11 50655829 50656074 -100127479 + AluSp SINE Alu 1 287 -16 206 31 0 31 chr11 50656074 50656106 -100127447 + (CCCCCG)n Simple_repeat Simple_repeat 4 34 0 1692 109 140 0 chr11 50656106 50656125 -100127428 + AluSp SINE Alu 287 302 -1 1940 68 8 0 chr11 50656190 50656442 -100127111 + AluY SINE Alu 41 294 -17 450 36 0 0 chr11 50656451 50656507 -100127046 + (CA)n Simple_repeat Simple_repeat 2 57 0 955 132 0 0 chr11 50656527 50656663 -100126890 + AluJo SINE Alu 1 136 -176 1940 134 0 3 chr11 50656912 50657210 -100126343 - AluSx SINE Alu -15 297 1 840 123 0 68 chr11 50657211 50657357 -100126196 - AluSq/x SINE Alu -177 136 1 1814 123 4 0 chr11 50657374 50657642 -100125911 - AluSp SINE Alu -9 304 36 340 270 161 0 chr11 50657912 50658049 -100125504 + MIR SINE MIR 104 262 0 183 254 97 88 chr11 50658044 50658158 -100125395 + MIR SINE MIR 124 238 -24 * 533 154 7 161 chr11 50658582 50658725 -100124828 - FLAM_A SINE Alu -12 130 10 1630 157 11 14 chr11 50658945 50659231 -100124322 - AluJb SINE Alu -21 291 7 1345 158 95 15 chr11 50659236 50659509 -100124044 - AluJo SINE Alu -17 295 1 1868 140 13 3 chr11 50659562 50659862 -100123691 + AluSx SINE Alu 1 303 -9 2124 103 7 0 chr11 50659979 50660271 -100123282 - AluSq SINE Alu -19 294 1 1248 120 0 0 chr11 50660533 50660725 -100122828 + AluSg/x SINE Alu 121 312 0 287 296 0 0 chr11 50661211 50661282 -100122271 - L2 LINE L2 -5 3308 3238 280 254 193 11 chr11 50661428 50661495 -100122058 - MIR SINE MIR -2 260 207 2151 102 0 0 chr11 50661495 50661788 -100121765 + AluSx SINE Alu 5 297 -15 280 254 193 11 chr11 50661788 50661882 -100121671 - MIR SINE MIR -55 207 60 1563 152 3 88 chr11 50663199 50663353 -100120200 + AluJb SINE Alu 1 114 -198 2207 66 14 3 chr11 50663353 50663641 -100119912 + AluY SINE Alu 1 291 -20 1563 152 3 88 chr11 50663641 50663816 -100119737 + AluJb SINE Alu 114 302 -10 1542 156 11 26 chr11 50663979 50664249 -100119304 - AluJo SINE Alu -20 292 27 236 53 26 0 chr11 50664280 50664318 -100119235 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 250 171 0 0 chr11 50664318 50664353 -100119200 - AluJo SINE Alu -264 36 2 1614 126 63 7 chr11 50664873 50665175 -100118378 + AluSx SINE Alu 1 317 0 797 127 16 0 chr11 50665527 50665653 -100117900 - AluSp/q SINE Alu -8 305 178 1904 125 21 3 chr11 50665653 50665942 -100117611 - AluSx SINE Alu -18 294 1 551 115 62 10 chr11 50665963 50666059 -100117494 - HY3 scRNA scRNA 0 101 1 1043 182 32 9 chr11 50666096 50666316 -100117237 - AluJo SINE Alu 0 312 88 2014 78 19 0 chr11 50666700 50666968 -100116585 - AluSq SINE Alu -16 297 25 1466 135 0 48 chr11 50667032 50667284 -100116269 - AluSq SINE Alu -18 295 56 1507 140 126 7 chr11 50667424 50667695 -100115858 - AluSx SINE Alu -9 303 1 2137 111 0 13 chr11 50667737 50668052 -100115501 - AluSp SINE Alu -2 311 1 189 0 0 0 chr11 50669989 50670010 -100113543 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 234 200 18 36 chr11 50670184 50670239 -100113314 + MIR SINE MIR 30 83 -179 185 200 0 0 chr11 50670258 50670288 -100113265 + MIR SINE MIR 212 241 -21 2039 122 10 3 chr11 50670296 50670600 -100112953 - AluSx SINE Alu -6 306 1 306 137 0 0 chr11 50670671 50670722 -100112831 + AluJo SINE Alu 86 136 -166 879 150 0 0 chr11 50670724 50670857 -100112696 + AluJb SINE Alu 1 133 -179 2086 100 0 0 chr11 50670872 50671194 -100112359 + AluSx SINE Alu 12 333 0 1287 32 0 6 chr11 50671198 50671354 -100112199 + L1PA4 LINE L1 5998 6152 -3 618 200 0 83 chr11 50671370 50671515 -100112038 + AluSc SINE Alu 116 248 -61 1054 160 28 33 chr11 50671515 50671728 -100111825 + AluJo SINE Alu 85 296 -16 675 292 0 49 chr11 50671783 50672009 -100111544 + MIR SINE MIR 48 262 0 2005 131 3 10 chr11 50672486 50672800 -100110753 - AluSx SINE Alu 0 312 1 701 200 8 0 chr11 50672805 50672930 -100110623 - FLAM_A SINE Alu -7 126 1 1581 197 24 3 chr11 50672935 50673229 -100110324 - AluJb SINE Alu -12 300 1 203 271 0 0 chr11 50673704 50673763 -100109790 + A-rich Low_complexity Low_complexity 1 59 0 2055 117 3 16 chr11 50674154 50674463 -100109090 + AluSx SINE Alu 1 305 -7 2049 131 0 0 chr11 50674835 50675147 -100108406 + AluSx SINE Alu 1 312 0 1236 107 0 0 chr11 50675147 50675315 -100108238 + AluSg/x SINE Alu 133 300 -12 1386 182 20 8 chr11 50675585 50675838 -100107715 + AluJo SINE Alu 1 256 -56 40 14 0 41 chr11 50675845 50675872 -100107681 + AT_rich Low_complexity Low_complexity 1 28 -42 1771 182 0 3 chr11 50675872 50676185 -100107368 + AluSx SINE Alu 1 312 0 40 14 0 41 chr11 50676185 50676206 -100107347 + AT_rich Low_complexity Low_complexity 28 48 -22 2151 103 0 10 chr11 50676206 50676506 -100107047 + AluSx SINE Alu 1 297 -15 40 14 0 41 chr11 50676506 50676529 -100107024 + AT_rich Low_complexity Low_complexity 48 70 0 232 174 22 0 chr11 50677027 50677073 -100106480 - Alu SINE Alu -116 185 139 180 0 0 0 chr11 50677735 50677755 -100105798 + (GGGGA)n Simple_repeat Simple_repeat 2 21 0 1272 165 0 18 chr11 50678092 50678316 -100105237 - AluJb SINE Alu -16 296 77 24 0 0 0 chr11 50678319 50678343 -100105210 + AT_rich Low_complexity Low_complexity 1 24 0 776 171 0 0 chr11 50678354 50678471 -100105082 + FLAM_C SINE Alu 1 117 -16 1634 94 60 113 chr11 50678478 50678796 -100104757 - AluSx SINE Alu -11 301 1 805 147 0 22 chr11 50678806 50678942 -100104611 - FLAM_C SINE Alu 0 133 1 2173 107 0 0 chr11 50679083 50679381 -100104172 - AluSx SINE Alu -14 298 1 390 159 0 0 chr11 50679671 50679734 -100103819 - Alu SINE Alu 0 302 240 860 219 198 8 chr11 50679795 50680037 -100103516 - AluJo SINE Alu -19 293 6 784 147 55 43 chr11 50680097 50680260 -100103293 - AluJb SINE Alu -14 298 134 2270 93 0 10 chr11 50681033 50681346 -100102207 - AluSx SINE Alu -2 310 1 335 289 56 61 chr11 50682004 50682184 -100101369 + MIR SINE MIR 2 180 -82 24 0 0 0 chr11 50682484 50682508 -100101045 + AT_rich Low_complexity Low_complexity 1 24 0 1925 90 82 0 chr11 50682508 50682775 -100100778 - AluSx SINE Alu -23 289 1 2248 112 0 0 chr11 50683595 50683908 -100099645 + AluSq SINE Alu 1 313 0 2272 50 13 23 chr11 50684826 50685128 -100098425 - AluY SINE Alu -12 299 1 2122 122 0 10 chr11 50685166 50685470 -100098083 - AluSg SINE Alu -9 301 1 2240 74 7 3 chr11 50685585 50685882 -100097671 - AluY SINE Alu -13 298 1 198 0 0 0 chr11 50685978 50686000 -100097553 + (TA)n Simple_repeat Simple_repeat 2 23 0 2365 88 0 0 chr11 50686000 50686307 -100097246 - AluSp SINE Alu -6 307 1 1716 169 0 14 chr11 50686555 50686850 -100096703 - AluJo SINE Alu -21 291 1 2200 86 3 7 chr11 50687240 50687543 -100096010 - AluY SINE Alu -9 302 1 1561 169 28 7 chr11 50687554 50687844 -100095709 - AluJb SINE Alu -16 296 1 2053 126 0 0 chr11 50688315 50688616 -100094937 + AluSx SINE Alu 1 301 -11 2003 129 7 0 chr11 50688621 50688915 -100094638 + AluSx SINE Alu 1 296 -16 2104 112 0 13 chr11 50688917 50689230 -100094323 + AluSq SINE Alu 1 309 -4 838 141 0 0 chr11 50689244 50689372 -100094181 + FLAM_C SINE Alu 7 134 -9 1853 103 3 97 chr11 50689430 50689759 -100093794 - AluSp SINE Alu -15 298 1 2018 79 43 4 chr11 50690750 50691027 -100092526 + AluY SINE Alu 2 289 -22 1736 146 7 24 chr11 50691114 50691408 -100092145 - AluJb SINE Alu -23 289 1 745 189 0 8 chr11 50691427 50691554 -100091999 - AluJb SINE Alu -185 127 2 1952 110 4 4 chr11 50691566 50691847 -100091706 - AluSx SINE Alu -20 292 12 2128 84 13 3 chr11 50691903 50692202 -100091351 + AluSg SINE Alu 1 302 -8 2210 85 3 0 chr11 50692508 50692802 -100090751 + AluSg SINE Alu 1 295 -15 1982 138 0 0 chr11 50692977 50693281 -100090272 - AluSx SINE Alu -8 304 1 701 182 23 15 chr11 50693296 50693428 -100090125 - AluJo SINE Alu -178 134 2 2286 82 0 7 chr11 50693556 50693860 -100089693 + AluY SINE Alu 1 302 -9 1345 204 7 28 chr11 50693963 50694252 -100089301 - AluJo SINE Alu -19 293 11 2261 92 0 7 chr11 50694358 50694663 -100088890 - AluSq SINE Alu -10 303 1 33 43 0 0 chr11 50694665 50694712 -100088841 + AT_rich Low_complexity Low_complexity 1 47 0 2290 93 0 6 chr11 50694902 50695215 -100088338 + AluY SINE Alu 1 311 0 2314 69 13 0 chr11 50695284 50695588 -100087965 + AluY SINE Alu 1 308 -3 2009 98 3 7 chr11 50696573 50696892 -100086661 + AluSq SINE Alu 1 318 0 2201 108 0 0 chr11 50697069 50697374 -100086179 + AluSq SINE Alu 6 310 -3 1247 163 22 47 chr11 50697415 50697735 -100085818 - AluSq SINE Alu -1 312 1 2081 103 17 0 chr11 50697906 50698208 -100085345 - AluSg SINE Alu -3 307 1 568 85 24 0 chr11 50699221 50699303 -100084250 + AluSp/q SINE Alu 215 298 -15 955 247 30 17 chr11 50699529 50699760 -100083793 - MIR SINE MIR 0 262 29 2300 84 0 3 chr11 50699936 50700247 -100083306 - AluY SINE Alu -1 310 1 1556 152 4 15 chr11 50700428 50700691 -100082862 - AluJb SINE Alu -52 260 1 181 356 127 17 chr11 50701042 50701160 -100082393 + L2 LINE L2 3122 3252 -20 1981 63 45 21 chr11 50701340 50701627 -100081926 - AluY SINE Alu -16 295 2 1771 103 8 8 chr11 50701685 50701994 -100081559 - AluSx SINE Alu 0 329 21 1990 102 46 3 chr11 50703271 50703555 -100079998 + AluSq SINE Alu 1 296 -17 573 261 71 14 chr11 50703720 50703931 -100079622 - L1MC4a LINE L1 -1980 5828 5606 1690 154 50 3 chr11 50703936 50704234 -100079319 - AluJo SINE Alu 0 312 1 2040 131 0 7 chr11 50704309 50704615 -100078938 + AluSx SINE Alu 1 304 -8 1291 115 60 5 chr11 50704997 50705197 -100078356 - AluSg/x SINE Alu -7 305 95 596 184 0 0 chr11 50705197 50705306 -100078247 + AluSg/x SINE Alu 200 308 -1 232 284 170 38 chr11 50705369 50705484 -100078069 + MIR SINE MIR 25 153 -63 1643 163 13 29 chr11 50706331 50706638 -100076915 - AluJo SINE Alu -10 302 1 1937 137 17 3 chr11 50706987 50707286 -100076267 + AluSx SINE Alu 1 303 -9 2401 48 14 0 chr11 50707457 50707747 -100075806 + AluY SINE Alu 1 294 -17 902 144 0 20 chr11 50708572 50708718 -100074835 + AluSq/x SINE Alu 1 143 -169 198 0 0 0 chr11 50708737 50708759 -100074794 + (A)n Simple_repeat Simple_repeat 1 22 0 1891 129 0 4 chr11 50708761 50709060 -100074493 + AluY SINE Alu 3 300 0 1697 164 0 10 chr11 50709062 50709354 -100074199 + AluSx SINE Alu 3 291 -21 436 239 275 0 chr11 50709464 50709602 -100073951 + MIR SINE MIR 81 256 -6 1618 178 10 16 chr11 50710009 50710312 -100073241 - AluJb SINE Alu -11 301 1 1806 138 14 3 chr11 50710424 50710715 -100072838 + AluJb SINE Alu 1 294 -18 1479 135 24 111 chr11 50711133 50711467 -100072086 - AluYb8 SINE Alu -13 305 1 900 112 0 0 chr11 50711467 50711592 -100071961 - AluSq/x SINE Alu -177 136 12 827 219 0 0 chr11 50711658 50711804 -100071749 - FRAM SINE Alu -30 146 1 1917 99 14 3 chr11 50712142 50712426 -100071127 + AluSq SINE Alu 1 287 -26 207 0 0 0 chr11 50712511 50712534 -100071019 + (TG)n Simple_repeat Simple_repeat 2 24 0 194 71 0 71 chr11 50712598 50712640 -100070913 + (T)n Simple_repeat Simple_repeat 1 39 0 1176 152 95 0 chr11 50714664 50714761 -100068792 - MER30 DNA MER1_type 0 230 144 2191 69 0 16 chr11 50714761 50715064 -100068489 - AluSc SINE Alu -11 298 1 1176 152 95 0 chr11 50715064 50715176 -100068377 - MER30 DNA MER1_type -86 144 1 1790 109 84 28 chr11 50715255 50715540 -100068013 - AluSq SINE Alu -12 301 1 1969 101 10 42 chr11 50715550 50715857 -100067696 - AluY SINE Alu -14 297 1 2178 109 0 3 chr11 50716287 50716590 -100066963 - AluSx SINE Alu -10 302 1 1538 171 30 7 chr11 50716601 50716905 -100066648 - AluJb SINE Alu -1 311 1 1516 182 7 7 chr11 50717004 50717300 -100066253 - AluJo SINE Alu 0 312 17 2250 80 0 0 chr11 50718368 50718656 -100064897 - AluY SINE Alu -21 290 3 264 59 0 0 chr11 50718673 50718707 -100064846 + (CA)n Simple_repeat Simple_repeat 2 35 0 1789 90 7 67 chr11 50719372 50719671 -100063882 - AluSx SINE Alu -21 291 11 656 248 227 13 chr11 50720632 50720690 -100062863 + L2 LINE L2 3024 3068 -245 2312 77 0 10 chr11 50720690 50721001 -100062552 - AluSg SINE Alu -2 308 1 656 248 227 13 chr11 50721001 50721180 -100062373 + L2 LINE L2 3068 3312 -1 273 287 167 20 chr11 50721329 50721479 -100062074 + MIR SINE MIR 41 212 -50 2149 117 0 3 chr11 50721513 50721822 -100061731 + AluSx SINE Alu 1 308 -4 1883 128 20 10 chr11 50721896 50722192 -100061361 - AluJb SINE Alu -11 301 3 407 214 45 0 chr11 50722423 50722512 -100061041 - MER91C DNA MER1_type -1 139 47 2271 65 7 0 chr11 50722724 50723014 -100060539 + AluSp SINE Alu 1 292 -21 1472 168 51 11 chr11 50723067 50723341 -100060212 + AluJb SINE Alu 14 298 -14 1308 177 139 70 chr11 50723384 50723757 -100059796 - LTR8A LTR ERV1 -1 726 328 653 152 174 8 chr11 50723759 50723891 -100059662 + BC200 scRNA scRNA 2 155 -45 817 186 6 47 chr11 50723902 50724074 -100059479 - LTR8A LTR ERV1 -347 380 216 658 144 0 0 chr11 50724079 50724176 -100059377 - AluJ/FLAM SINE Alu -214 98 2 248 348 8 8 chr11 50724195 50724313 -100059240 - MLT1L LTR MaLR -77 538 421 2065 108 13 3 chr11 50724379 50724684 -100058869 - AluSp SINE Alu -5 308 1 1944 133 3 7 chr11 50724754 50725056 -100058497 - AluSc SINE Alu -8 301 1 315 200 100 22 chr11 50725078 50725168 -100058385 - MLT1L LTR MaLR -338 277 181 281 204 19 0 chr11 50725175 50725229 -100058324 + MER20 DNA MER1_type 2 56 -163 598 173 45 18 chr11 50725229 50725339 -100058214 + LTR29 LTR ERV1 1 113 -509 1267 121 3 172 chr11 50725348 50725484 -100058069 + AluJo SINE Alu 1 44 -268 2201 92 0 3 chr11 50725484 50725789 -100057764 + AluY SINE Alu 1 304 -7 1267 121 3 172 chr11 50725789 50726000 -100057553 + AluJo SINE Alu 44 289 -23 244 143 0 0 chr11 50726005 50726047 -100057506 + LTR29 LTR ERV1 383 424 -198 * 734 170 58 29 chr11 50726042 50726213 -100057340 + LTR49 LTR ERV1 417 592 -3 1941 133 0 22 chr11 50726481 50726798 -100056755 + AluSx SINE Alu 2 311 -1 2187 95 23 0 chr11 50727173 50727479 -100056074 - AluSp SINE Alu 0 313 1 2004 112 0 27 chr11 50727699 50727994 -100055559 - AluSg SINE Alu -23 287 1 1243 179 40 81 chr11 50728018 50728124 -100055429 - MLT1D LTR MaLR -2 503 394 2257 101 7 0 chr11 50728124 50728422 -100055131 - AluSx SINE Alu -12 300 1 1243 179 40 81 chr11 50728422 50728433 -100055120 - MLT1D LTR MaLR -111 394 384 2151 117 3 0 chr11 50728433 50728733 -100054820 - AluSx SINE Alu -11 301 1 1243 179 40 81 chr11 50728733 50728911 -100054642 - MLT1D LTR MaLR -121 384 219 733 214 11 22 chr11 50728911 50729089 -100054464 + LTR28 LTR ERV1 1 176 -844 1585 172 55 7 chr11 50729160 50729433 -100054120 + MER61D LTR ERV1 216 501 0 340 138 0 17 chr11 50729434 50729492 -100054061 - MLT1D LTR MaLR -284 221 165 * 347 215 15 0 chr11 50729487 50729552 -100054001 - MER21B LTR ERV1 -271 592 527 1808 173 86 9 chr11 50729574 50729910 -100053643 + MSTA LTR MaLR 1 362 -66 852 102 0 0 chr11 50729910 50730028 -100053525 - AluSg/q SINE Alu -10 303 186 981 83 0 0 chr11 50730028 50730148 -100053405 - AluSg SINE Alu -190 120 1 1879 135 88 94 chr11 50730150 50730414 -100053139 + MER4D LTR ERV1 441 703 -200 1716 167 7 4 chr11 50730414 50730710 -100052843 - AluSx SINE Alu 0 302 6 1879 135 88 94 chr11 50730710 50730910 -100052643 + MER4D LTR ERV1 703 903 0 2199 119 0 0 chr11 50730941 50731234 -100052319 - AluSx SINE Alu -19 293 1 268 57 0 0 chr11 50731235 50731270 -100052283 + MSTA LTR MaLR 388 422 -35 551 107 0 0 chr11 50731270 50731371 -100052182 - AluSg SINE Alu 0 306 206 1189 74 7 7 chr11 50731372 50731521 -100052032 - AluSg SINE Alu -161 149 1 279 132 0 19 chr11 50731579 50731632 -100051921 - Alu SINE Alu 0 301 250 582 133 0 0 chr11 50731733 50731816 -100051737 - AluSg1 SINE Alu -225 84 2 2419 100 3 0 chr11 50731866 50732177 -100051376 - AluSq SINE Alu -1 312 1 2011 139 10 0 chr11 50732382 50732677 -100050876 + AluSx SINE Alu 1 298 -14 601 313 57 0 chr11 50732729 50732940 -100050613 - MIR SINE MIR -20 242 20 2636 244 98 29 chr11 50732940 50733825 -100049728 - L1MC4 LINE L1 -348 7540 6482 2294 100 3 35 chr11 50733825 50734144 -100049409 + AluSq SINE Alu 1 309 -4 2636 244 98 29 chr11 50734144 50734293 -100049260 - L1MC4 LINE L1 -1406 6482 6345 252 0 0 0 chr11 50734831 50734859 -100048694 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2289 68 18 4 chr11 50734861 50735142 -100048411 - AluSp SINE Alu -28 285 1 194 295 90 0 chr11 50735328 50735406 -100048147 - MIR3 SINE MIR -30 178 94 2290 86 10 0 chr11 50735612 50735903 -100047650 - AluSg1 SINE Alu -3 306 13 1840 153 10 7 chr11 50735906 50736201 -100047352 - AluJb SINE Alu -16 296 1 1521 96 5 0 chr11 50736335 50736534 -100047019 - AluSx SINE Alu -81 231 32 2375 85 3 0 chr11 50736730 50737024 -100046529 + AluSg SINE Alu 1 295 -15 407 117 0 0 chr11 50737077 50737137 -100046416 + L1MC2 LINE L1 6262 6321 -23 2229 104 3 3 chr11 50738447 50738744 -100044809 - AluSx SINE Alu -15 297 1 828 117 0 0 chr11 50738952 50739063 -100044490 + AluSg/x SINE Alu 183 293 -19 2268 83 21 0 chr11 50739649 50739938 -100043615 - AluSx SINE Alu -17 295 1 2097 142 0 19 chr11 50740052 50740369 -100043184 - AluSx SINE Alu -1 311 1 2378 94 0 3 chr11 50740385 50740683 -100042870 - AluSx SINE Alu -15 297 1 331 256 191 42 chr11 50741184 50741399 -100042154 - MIR SINE MIR -13 249 3 2547 66 3 0 chr11 50741444 50741745 -100041808 - AluSp SINE Alu -11 302 1 2137 112 11 0 chr11 50741755 50742042 -100041511 - AluSq SINE Alu -21 292 3 1737 166 0 51 chr11 50742139 50742304 -100041249 - AluJo SINE Alu -15 297 154 2264 108 0 0 chr11 50742304 50742600 -100040953 - AluY SINE Alu -15 296 1 1737 166 0 51 chr11 50742600 50742747 -100040806 - AluJo SINE Alu -158 154 1 1850 149 3 59 chr11 50742766 50742938 -100040615 - AluJo SINE Alu -8 304 157 1884 161 34 0 chr11 50742938 50743236 -100040317 - AluSx SINE Alu -4 308 1 1850 149 3 59 chr11 50743236 50743385 -100040168 - AluJo SINE Alu -155 157 1 1221 189 22 9 chr11 50743386 50743614 -100039939 - AluJo SINE Alu -52 260 30 186 43 0 0 chr11 50743739 50743762 -100039791 + (A)n Simple_repeat Simple_repeat 1 23 0 377 335 92 0 chr11 50743804 50743989 -100039564 + L2 LINE L2 3061 3262 -10 2284 117 0 0 chr11 50745274 50745574 -100037979 + AluSx SINE Alu 1 300 -12 1904 114 89 0 chr11 50745574 50745855 -100037698 + AluSg SINE Alu 1 306 -4 1680 209 0 0 chr11 50746410 50746711 -100036842 - AluJo SINE Alu -7 305 5 2043 109 16 39 chr11 50746735 50747046 -100036507 + AluSq SINE Alu 1 304 -9 1500 88 0 0 chr11 50747074 50747256 -100036297 - AluY SINE Alu -127 184 3 1966 88 35 0 chr11 50747373 50747633 -100035920 + AluSg SINE Alu 21 289 -21 5122 66 3 5 chr11 50747654 50748306 -100035247 + L1PA6 LINE L1 5492 6142 -12 314 203 0 38 chr11 50748596 50748675 -100034878 - L1MC4 LINE L1 -455 7587 7512 199 174 22 22 chr11 50749063 50749109 -100034444 + L2 LINE L2 3263 3308 -5 1390 146 17 29 chr11 50749247 50749410 -100034143 - AluSx SINE Alu -17 295 131 184 30 61 0 chr11 50749410 50749443 -100034110 + (TG)n Simple_repeat Simple_repeat 2 36 0 1690 153 3 24 chr11 50749443 50749733 -100033820 - AluSx SINE Alu -28 284 1 1390 146 17 29 chr11 50749733 50749813 -100033740 - AluSx SINE Alu -179 133 59 2119 106 7 0 chr11 50749932 50750216 -100033337 - AluSp SINE Alu -24 289 4 372 248 121 7 chr11 50750236 50750385 -100033168 + L2 LINE L2 2032 2197 -1117 954 200 6 0 chr11 50750385 50750560 -100032993 - AluJo SINE Alu -3 309 134 1483 217 0 16 chr11 50750561 50750874 -100032679 - AluSx SINE Alu -4 308 1 407 215 0 0 chr11 50750909 50750988 -100032565 + AluJ/FLAM SINE Alu 1 79 -223 299 116 0 0 chr11 50751105 50751148 -100032405 - AluJo SINE Alu -175 127 85 768 106 26 8 chr11 50751154 50751286 -100032267 - LTR54 LTR ERV1 -193 317 124 902 118 0 16 chr11 50751288 50751415 -100032138 - FLAM_C SINE Alu -13 130 6 604 162 108 0 chr11 50751420 50751531 -100032022 - LTR54 LTR ERV1 -373 137 15 2090 144 0 0 chr11 50751532 50751831 -100031722 - AluSq SINE Alu -14 299 1 2438 78 0 10 chr11 50751845 50752152 -100031401 - AluSc SINE Alu -1 308 5 640 102 37 19 chr11 50752183 50752291 -100031262 + L1MA9 LINE L1 6203 6312 0 182 229 104 0 chr11 50752294 50752342 -100031211 + MER5B DNA MER1_type 1 53 -125 585 170 64 78 chr11 50752914 50753132 -100030421 - MER20 DNA MER1_type -4 215 1 1168 214 19 4 chr11 50753224 50753490 -100030063 + AluSp SINE Alu 14 283 -30 978 135 0 53 chr11 50753605 50753775 -100029778 + AluY SINE Alu 132 292 -19 2085 132 0 10 chr11 50753823 50754133 -100029420 + AluSq SINE Alu 1 307 -6 676 193 62 7 chr11 50754133 50754278 -100029275 + Charlie1 DNA MER1_type 1874 2026 -735 328 155 17 0 chr11 50754309 50754367 -100029186 + MER68 LTR ERV1 1 59 -503 405 227 0 11 chr11 50754367 50754455 -100029098 + AluSg SINE Alu 34 120 -190 1405 208 14 32 chr11 50754455 50754734 -100028819 + MER68 LTR ERV1 289 562 0 556 138 147 0 chr11 50754781 50754890 -100028663 + Charlie1 DNA MER1_type 2636 2760 -1 1124 202 0 0 chr11 50755619 50755812 -100027741 + MER46A DNA MER2_type 44 236 0 2251 116 0 10 chr11 50755991 50756302 -100027251 + AluSx SINE Alu 1 308 -4 2293 134 0 0 chr11 50756302 50756607 -100026946 + AluY SINE Alu 1 305 -6 2019 145 3 0 chr11 50756753 50757056 -100026497 - AluSg SINE Alu -6 304 1 1678 147 53 3 chr11 50757513 50757635 -100025918 + AluSx SINE Alu 4 119 -193 2040 141 6 6 chr11 50757635 50757947 -100025606 + AluSx SINE Alu 1 312 0 1678 147 53 3 chr11 50757947 50758109 -100025444 + AluSx SINE Alu 119 302 -10 2432 57 0 0 chr11 50758515 50758822 -100024731 - AluY SINE Alu 0 307 1 509 192 10 10 chr11 50758973 50759077 -100024476 + MSTD LTR MaLR 4 107 -289 1459 152 123 7 chr11 50759135 50759404 -100024149 - AluSg1 SINE Alu -9 300 1 420 20 0 0 chr11 50760394 50760443 -100023110 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 594 123 0 75 chr11 50760552 50760658 -100022895 + AluSq/x SINE Alu 14 111 -202 910 155 84 66 chr11 50760776 50760989 -100022564 + AluSc SINE Alu 85 301 -8 317 173 0 0 chr11 50760998 50761050 -100022503 + L1M4 LINE L1 4097 4148 -1998 4304 192 52 52 chr11 50761092 50761151 -100022402 + L1M4 LINE L1 4143 4201 -1945 1655 173 11 7 chr11 50761151 50761428 -100022125 - AluJb SINE Alu -22 290 13 4304 192 52 52 chr11 50761428 50762494 -100021059 + L1M4 LINE L1 4200 5268 -878 296 235 37 74 chr11 50762497 50762578 -100020975 + Tigger3(Golem) DNA MER2_type 1 78 -2951 2044 128 24 3 chr11 50762579 50762877 -100020676 - AluSx SINE Alu -8 304 1 672 185 32 53 chr11 50762881 50762934 -100020619 + L1M4 LINE L1 5271 5324 -850 6333 93 17 1 chr11 50762934 50764147 -100019406 + L1PA14 LINE L1 4935 6161 0 2210 91 3 3 chr11 50764153 50764465 -100019088 + AluSx SINE Alu 1 312 0 672 185 32 53 chr11 50764465 50764593 -100018960 + L1M4 LINE L1 5329 5455 -719 684 250 7 0 chr11 50764693 50764841 -100018712 - FRAM SINE Alu -24 152 4 2159 134 0 16 chr11 50764848 50765161 -100018392 - AluSx SINE Alu -4 308 1 1665 206 55 120 chr11 50765161 50765196 -100018357 + L2 LINE L2 2187 2223 -1091 1939 151 3 0 chr11 50765196 50765488 -100018065 + AluJb SINE Alu 1 293 -19 1665 206 55 120 chr11 50765488 50766010 -100017543 + L2 LINE L2 2223 2695 -619 2430 63 17 0 chr11 50766010 50766311 -100017242 + AluY SINE Alu 1 306 -5 1665 206 55 120 chr11 50766311 50766426 -100017127 + L2 LINE L2 2695 2816 -498 1113 189 58 0 chr11 50766488 50766694 -100016859 - AluJo SINE Alu -8 304 87 2271 120 3 0 chr11 50766916 50767225 -100016328 - AluSp SINE Alu -3 310 1 2405 90 0 0 chr11 50767433 50767734 -100015819 - AluSc SINE Alu -8 301 1 1357 92 6 0 chr11 50767756 50767998 -100015555 - AluSg/x SINE Alu 0 350 108 2206 115 7 0 chr11 50768129 50768433 -100015120 + AluSp SINE Alu 2 307 -6 27 0 0 0 chr11 50768743 50768770 -100014783 + AT_rich Low_complexity Low_complexity 1 27 0 2067 243 43 61 chr11 50769436 50769913 -100013640 + L1M4 LINE L1 2679 3163 -2983 2369 96 7 0 chr11 50769913 50770216 -100013337 + AluSp SINE Alu 1 305 -8 2111 120 3 13 chr11 50770223 50770539 -100013014 + AluSq SINE Alu 1 313 0 2447 72 0 3 chr11 50770539 50770844 -100012709 + AluY SINE Alu 1 304 -7 2182 104 0 3 chr11 50770847 50771135 -100012418 + AluY SINE Alu 1 287 -24 2067 243 43 61 chr11 50771135 50771156 -100012397 + L1M4 LINE L1 3170 3190 -2956 2137 141 3 6 chr11 50771156 50771468 -100012085 + AluSx SINE Alu 1 311 -1 2067 243 43 61 chr11 50771468 50771821 -100011732 + L1M4 LINE L1 3190 3528 -2618 260 167 0 0 chr11 50771825 50771867 -100011686 + Alu SINE Alu 5 46 -253 534 225 0 0 chr11 50771967 50772078 -100011475 + AluJb SINE Alu 186 296 -16 833 127 105 50 chr11 50772081 50772224 -100011329 + LTR54 LTR ERV1 320 476 -34 2137 137 0 0 chr11 50772224 50772523 -100011030 + AluSg SINE Alu 1 299 -11 833 127 105 50 chr11 50772523 50772560 -100010993 + LTR54 LTR ERV1 476 510 0 747 139 8 8 chr11 50772560 50772689 -100010864 - L1MA9 LINE L1 -109 6203 6075 2450 135 77 89 chr11 50772691 50773298 -100010255 - LTR38B LTR ERV1 0 610 11 2662 168 78 32 chr11 50773302 50773928 -100009625 + LTR8A LTR ERV1 1 655 -72 1566 183 38 0 chr11 50773929 50774219 -100009334 - AluSp SINE Alu -12 301 1 313 184 214 10 chr11 50774263 50774361 -100009192 - MER112 DNA MER1_type -110 150 33 231 36 0 0 chr11 50774459 50774487 -100009066 + (A)n Simple_repeat Simple_repeat 1 28 0 2046 121 0 7 chr11 50776165 50776446 -100007107 - AluSx SINE Alu -33 279 1 1567 119 0 0 chr11 50776896 50777097 -100006456 - AluSx SINE Alu -111 201 1 536 221 0 0 chr11 50777105 50777200 -100006353 - Tigger5 DNA MER2_type -2228 95 1 192 283 33 0 chr11 50777598 50777658 -100005895 + MIR SINE MIR 80 141 -121 1773 124 120 0 chr11 50777866 50778132 -100005421 - AluSx SINE Alu -14 298 1 308 46 31 31 chr11 50778146 50778211 -100005342 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 521 282 35 29 chr11 50778271 50778441 -100005112 - MER5A DNA MER1_type 0 189 19 548 105 47 0 chr11 50778458 50778544 -100005009 - HY3 scRNA scRNA -11 90 1 677 146 0 62 chr11 50778828 50778972 -100004581 - FLAM_C SINE Alu 0 143 9 1488 200 39 4 chr11 50779289 50779569 -100003984 - AluJo SINE Alu -22 290 1 2269 115 0 0 chr11 50780890 50781195 -100002358 - AluY SINE Alu -6 305 1 2134 124 0 10 chr11 50781197 50781495 -100002058 - AluSx SINE Alu -17 295 1 1717 148 63 11 chr11 50781536 50781820 -100001733 - AluSg SINE Alu -11 299 1 2526 46 0 16 chr11 50781826 50782129 -100001424 - AluY SINE Alu -13 298 1 2210 107 3 10 chr11 50782984 50783282 -100000271 - AluSx SINE Alu -14 298 3 395 210 49 0 chr11 50783291 50783372 -100000181 - FLAM SINE Alu -6 127 43 273 136 0 23 chr11 50783472 50783516 -100000037 - Alu SINE Alu -265 43 1 23 33 0 0 chr11 50783873 50783903 -99999650 + AT_rich Low_complexity Low_complexity 1 30 0 1187 164 16 56 chr11 50783978 50784153 -99999400 - Tigger2 DNA MER2_type -1 2717 2537 2295 103 3 3 chr11 50784153 50784454 -99999099 - AluSp SINE Alu -12 301 1 1187 164 16 56 chr11 50784454 50784481 -99999072 - Tigger2 DNA MER2_type -181 2537 2510 2249 90 0 3 chr11 50784481 50784769 -99998784 - AluSq SINE Alu -26 287 1 1187 164 16 56 chr11 50784769 50784815 -99998738 - Tigger2 DNA MER2_type -208 2510 2478 953 173 6 6 chr11 50784815 50784977 -99998576 + FRAM SINE Alu 1 161 -15 3781 128 5 7 chr11 50784980 50785548 -99998005 - Tigger2 DNA MER2_type -1548 1170 604 2144 117 0 3 chr11 50785558 50785849 -99997704 - AluSx SINE Alu -22 290 1 747 170 19 25 chr11 50785849 50786008 -99997545 - Tigger2 DNA MER2_type -2560 158 1 380 189 124 59 chr11 50786590 50786743 -99996810 - MIR SINE MIR -6 256 94 2137 90 30 30 chr11 50787194 50787493 -99996060 - AluSg SINE Alu -11 299 1 1955 141 35 0 chr11 50787600 50787912 -99995641 + L1M3 LINE L1 5486 5808 -375 575 297 0 0 chr11 50787936 50788121 -99995432 - AluSq SINE Alu 0 313 129 380 333 93 8 chr11 50788131 50788421 -99995132 + L1MB2 LINE L1 5812 6128 -43 542 103 0 0 chr11 50788569 50788647 -99994906 - AluY SINE Alu -238 80 3 301 280 140 0 chr11 50788675 50788782 -99994771 - L2 LINE L2 0 3272 3151 943 225 4 26 chr11 50789023 50789250 -99994303 + AluJb SINE Alu 87 308 -4 785 149 0 22 chr11 50789313 50789447 -99994106 + FLAM_C SINE Alu 1 131 -2 2072 136 3 3 chr11 50789451 50789745 -99993808 + AluJb SINE Alu 1 294 -18 2183 91 0 44 chr11 50789972 50790301 -99993252 + AluSx SINE Alu 1 316 0 757 169 0 44 chr11 50790852 50790988 -99992565 - FLAM_C SINE Alu -10 133 4 1967 164 0 0 chr11 50791062 50791355 -99992198 - AluJb SINE Alu -19 293 1 391 251 25 136 chr11 50791791 50791945 -99991608 - L2 LINE L2 -4 3309 3139 2306 93 0 29 chr11 50791945 50792084 -99991469 + AluSx SINE Alu 1 142 -170 2395 90 3 0 chr11 50792084 50792383 -99991170 + AluSp SINE Alu 1 300 -13 2306 93 0 29 chr11 50792383 50792556 -99990997 + AluSx SINE Alu 142 304 -8 2106 118 27 0 chr11 50792558 50792855 -99990698 + AluSq SINE Alu 1 305 -8 391 251 25 136 chr11 50792855 50793020 -99990533 - L2 LINE L2 -175 3138 3023 2395 75 3 20 chr11 50793020 50793326 -99990227 + AluSx SINE Alu 1 301 -11 2539 57 0 13 chr11 50793481 50793795 -99989758 - AluY SINE Alu -1 310 1 668 232 89 44 chr11 50793799 50794092 -99989461 + L1M4 LINE L1 4639 4944 -1202 2148 75 89 0 chr11 50795706 50795986 -99987567 + AluSp SINE Alu 1 305 -8 2265 76 0 21 chr11 50797670 50797961 -99985592 - AluSp SINE Alu -28 285 1 22 0 0 0 chr11 50797961 50797983 -99985570 + AT_rich Low_complexity Low_complexity 1 22 0 371 161 43 75 chr11 50798086 50798121 -99985432 + Looper DNA T2_type 2 37 -1521 2269 114 0 0 chr11 50798121 50798418 -99985135 - AluSg SINE Alu -13 297 1 371 161 43 75 chr11 50798418 50798475 -99985078 + Looper DNA T2_type 37 91 -1467 1093 141 40 5 chr11 50798529 50798728 -99984825 + Looper DNA T2_type 1214 1419 -139 376 244 26 0 chr11 50798724 50798802 -99984751 - FLAM_A SINE Alu -50 83 4 * 2202 82 57 0 chr11 50798812 50799094 -99984459 - AluSg SINE Alu -12 298 1 355 200 21 57 chr11 50799111 50799198 -99984355 + AluJ/FLAM SINE Alu 3 74 -228 330 26 0 0 chr11 50799476 50799515 -99984038 + (TG)n Simple_repeat Simple_repeat 2 40 0 2335 68 7 0 chr11 50800258 50800572 -99982981 + AluY SINE Alu 1 316 0 21 0 0 0 chr11 50800734 50800755 -99982798 + AT_rich Low_complexity Low_complexity 1 21 0 1001 129 0 53 chr11 50800798 50800968 -99982585 + AluY SINE Alu 132 292 -19 328 68 20 3 chr11 50801016 50801266 -99982287 + AluY SINE Alu 1 325 0 1727 139 17 38 chr11 50801281 50801569 -99981984 + AluSx SINE Alu 1 282 -30 450 53 0 0 chr11 50801979 50802036 -99981517 + (A)n Simple_repeat Simple_repeat 1 57 0 34 24 0 0 chr11 50802219 50802260 -99981293 + AT_rich Low_complexity Low_complexity 1 41 0 24 32 0 0 chr11 50802364 50802395 -99981158 + AT_rich Low_complexity Low_complexity 1 31 0 375 60 0 0 chr11 50802631 50802681 -99980872 + (A)n Simple_repeat Simple_repeat 1 50 0 207 259 0 17 chr11 50802772 50802830 -99980723 + L2 LINE L2 3221 3277 -36 939 142 0 0 chr11 50802864 50802998 -99980555 - AluSp/q SINE Alu -12 301 168 2421 87 0 0 chr11 50803207 50803507 -99980046 - AluSx SINE Alu -12 300 1 238 103 0 0 chr11 50803509 50803548 -99980005 + L1MB5 LINE L1 6128 6166 -8 28 0 0 0 chr11 50803548 50803576 -99979977 + AT_rich Low_complexity Low_complexity 1 28 0 189 139 0 0 chr11 50803643 50803686 -99979867 + (TGG)n Simple_repeat Simple_repeat 1 43 0 1791 171 7 13 chr11 50804181 50804479 -99979074 - AluJb SINE Alu -16 296 1 22 35 0 0 chr11 50804496 50804525 -99979028 + AT_rich Low_complexity Low_complexity 1 29 0 718 191 85 0 chr11 50804855 50804996 -99978557 - FRAM SINE Alu -23 153 1 243 226 0 0 chr11 50805211 50805264 -99978289 + G-rich Low_complexity Low_complexity 2 54 0 515 263 94 6 chr11 50806455 50806615 -99976938 - MIR3 SINE MIR -6 202 29 1075 142 19 80 chr11 50806876 50807088 -99976465 - AluJo SINE Alu -36 276 78 782 51 31 0 chr11 50807513 50807611 -99975942 - HY3 scRNA scRNA 0 101 1 2108 119 0 3 chr11 50807862 50808155 -99975398 - AluSx SINE Alu -6 306 15 243 270 135 0 chr11 50808167 50808256 -99975297 + U13 snRNA snRNA 4 104 0 2030 123 14 0 chr11 50808509 50808794 -99974759 - AluSp SINE Alu -24 289 1 1990 109 18 4 chr11 50808875 50809149 -99974404 - AluSq SINE Alu -21 292 15 1616 208 28 3 chr11 50809154 50809442 -99974111 - AluJb SINE Alu -12 300 6 2283 112 3 0 chr11 50809467 50809770 -99973783 - AluSx SINE Alu -8 304 1 1041 169 5 58 chr11 50810135 50810342 -99973211 - AluJo SINE Alu -21 291 96 2378 80 0 0 chr11 50813454 50813743 -99969810 + AluSq SINE Alu 1 289 -24 2160 94 17 20 chr11 50813953 50814252 -99969301 - AluSx SINE Alu -14 298 1 2538 48 3 0 chr11 50815061 50815356 -99968197 - AluY SINE Alu -15 296 1 2115 122 17 0 chr11 50815356 50815650 -99967903 - AluSx SINE Alu -13 299 1 292 57 0 0 chr11 50815687 50815722 -99967831 - AluSp/q SINE Alu -20 283 249 2170 106 3 0 chr11 50815727 50816009 -99967544 - AluSq SINE Alu -30 283 1 2284 128 0 0 chr11 50816055 50816367 -99967186 - AluSx SINE Alu 0 312 1 28 29 0 0 chr11 50816375 50816410 -99967143 + AT_rich Low_complexity Low_complexity 1 35 0 1794 149 23 10 chr11 50820372 50820673 -99962880 - AluJb SINE Alu -7 305 1 2427 90 0 0 chr11 50821174 50821475 -99962078 - AluSx SINE Alu -6 306 6 1322 134 0 15 chr11 50821593 50821795 -99961758 + AluSq SINE Alu 1 199 -114 1114 189 72 106 chr11 50821927 50822018 -99961535 + L1MA9 LINE L1 5965 6058 -254 2106 119 0 0 chr11 50822018 50822295 -99961258 + AluSc SINE Alu 1 277 -32 1114 189 72 106 chr11 50822295 50822563 -99960990 + L1MA9 LINE L1 6058 6312 0 2453 62 3 0 chr11 50823123 50823415 -99960138 + AluY SINE Alu 1 293 -18 1104 156 0 0 chr11 50823420 50823593 -99959960 + AluSg/x SINE Alu 137 309 -3 2162 90 0 17 chr11 50823600 50823889 -99959664 + AluSg SINE Alu 1 284 -26 1876 127 51 3 chr11 50824249 50824541 -99959012 + AluY SINE Alu 1 306 -5 246 178 0 0 chr11 50824844 50824889 -99958664 + Alu SINE Alu 256 300 -2 2133 109 24 3 chr11 50825128 50825422 -99958131 - AluSx SINE Alu -12 300 1 2258 88 6 31 chr11 50825650 50825967 -99957586 + AluY SINE Alu 1 309 -2 1830 131 3 45 chr11 50825977 50826267 -99957286 + AluJb SINE Alu 1 278 -34 360 0 0 0 chr11 50826267 50826307 -99957246 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 297 307 45 82 chr11 50826426 50826528 -99957025 - MIR SINE MIR -26 236 132 1788 174 13 13 chr11 50826528 50826839 -99956714 + AluJo SINE Alu 1 311 -1 297 307 45 82 chr11 50826839 50826942 -99956611 - MIR SINE MIR -130 132 38 2149 88 29 0 chr11 50826942 50827238 -99956315 - AluSg SINE Alu 0 304 1 297 307 45 82 chr11 50827238 50827274 -99956279 - MIR SINE MIR -224 38 2 437 220 75 31 chr11 50827749 50827908 -99955645 + MER103 DNA DNA 1 166 0 496 154 23 23 chr11 50828437 50828567 -99954986 + A-rich Low_complexity Low_complexity 3 132 0 2080 104 24 7 chr11 50828569 50828857 -99954696 + AluSx SINE Alu 1 293 -19 2095 125 3 10 chr11 50828969 50829265 -99954288 + AluSg SINE Alu 1 294 -16 22 0 0 0 chr11 50829251 50829273 -99954280 + AT_rich Low_complexity Low_complexity 1 22 0 946 80 0 87 chr11 50829287 50829437 -99954116 + FLAM_C SINE Alu 7 143 0 1824 119 13 74 chr11 50829456 50829766 -99953787 + AluSg SINE Alu 6 296 -14 2174 98 32 0 chr11 50829766 50830060 -99953493 + AluSg1 SINE Alu 1 291 -18 222 56 0 28 chr11 50830060 50830096 -99953457 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1399 142 0 14 chr11 50830409 50830627 -99952926 + AluSx SINE Alu 5 219 -93 832 154 0 0 chr11 50830727 50830863 -99952690 + AluSp/q SINE Alu 165 300 -13 292 303 47 104 chr11 50830892 50831103 -99952450 - L2 LINE L2 -563 2751 2553 1878 135 0 3 chr11 50831313 50831601 -99951952 - AluJb SINE Alu -14 298 12 1827 155 7 0 chr11 50831620 50831911 -99951642 - AluSx SINE Alu -19 293 1 202 261 0 0 chr11 50832407 50832453 -99951100 - MIR SINE MIR -109 153 108 578 96 250 0 chr11 50832555 50832659 -99950894 + AluJb SINE Alu 179 308 -4 2182 141 148 56 chr11 50832665 50832722 -99950831 + LTR48 LTR ERV1 21 71 -716 481 119 12 0 chr11 50832722 50832806 -99950747 + L1PA16 LINE L1 6080 6164 -2 2182 141 148 56 chr11 50832806 50833303 -99950250 + LTR48 LTR ERV1 71 626 -161 1931 86 0 4 chr11 50833303 50833558 -99949995 - AluSx SINE Alu -58 254 1 833 191 62 24 chr11 50833600 50833809 -99949744 + AluJb SINE Alu 83 299 -13 1074 183 58 10 chr11 50833811 50834019 -99949534 + MER44D DNA MER2_type 516 605 0 324 231 161 63 chr11 50834023 50834322 -99949231 + L1M4 LINE L1 4271 4598 -1548 1984 125 3 0 chr11 50834345 50834648 -99948905 + AluSg SINE Alu 1 304 -6 1963 123 3 0 chr11 50835023 50835315 -99948238 + AluSx SINE Alu 18 310 -2 2151 111 0 6 chr11 50835415 50835730 -99947823 + AluSq SINE Alu 1 313 0 476 211 9 9 chr11 50835792 50835901 -99947652 - FLAM_A SINE Alu -1 141 33 2080 97 21 3 chr11 50836024 50836314 -99947239 + AluSx SINE Alu 9 303 -9 1397 173 50 7 chr11 50837088 50837371 -99946182 - AluJo SINE Alu -17 295 1 1828 66 27 12 chr11 50837407 50837664 -99945889 - L1MA1 LINE L1 -6 6296 6036 3797 108 53 35 chr11 50837712 50838670 -99944883 + MER11A LTR ERVK 1 1071 0 2136 89 10 3 chr11 50839329 50839620 -99943933 - AluSg SINE Alu -17 293 1 1744 118 20 62 chr11 50839854 50840015 -99943538 - AluSx SINE Alu -19 293 150 1637 121 4 12 chr11 50840015 50840272 -99943281 - AluSq SINE Alu -13 300 46 1744 118 20 62 chr11 50840272 50840416 -99943137 - AluSx SINE Alu -162 150 1 509 309 6 0 chr11 50840565 50840746 -99942807 + L1MB2 LINE L1 5569 5750 -433 1223 135 0 0 chr11 50840820 50841005 -99942548 - AluSq SINE Alu 0 313 129 1588 155 90 3 chr11 50841017 50841307 -99942246 + L1MB2 LINE L1 5817 6131 -40 2016 63 66 0 chr11 50841307 50841578 -99941975 + AluY SINE Alu 4 292 -19 1820 125 10 30 chr11 50841583 50841717 -99941836 + AluSx SINE Alu 5 140 -172 1861 115 3 24 chr11 50841717 50842043 -99941510 + AluSx SINE Alu 1 320 0 1820 125 10 30 chr11 50842043 50842203 -99941350 + AluSx SINE Alu 140 295 -17 204 196 22 22 chr11 50842341 50842387 -99941166 - L2 LINE L2 -5 3308 3263 591 200 86 7 chr11 50842775 50842915 -99940638 + L1MC4 LINE L1 7512 7662 -380 2058 122 0 7 chr11 50842962 50843266 -99940287 + AluSx SINE Alu 1 302 -10 192 152 0 0 chr11 50843561 50843594 -99939959 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 208 219 24 0 chr11 50843596 50843637 -99939916 + polypurine Low_complexity Low_complexity 3 44 0 317 233 30 40 chr11 50843637 50843776 -99939777 + L1MC4 LINE L1 7878 7995 0 1679 135 90 0 chr11 50843819 50844085 -99939468 - AluSx SINE Alu -22 290 1 2023 108 7 26 chr11 50844324 50844629 -99938924 - AluSq SINE Alu -12 301 3 1307 191 55 22 chr11 50845649 50845922 -99937631 + AluJo SINE Alu 1 282 -30 232 214 0 0 chr11 50845928 50845970 -99937583 + L2 LINE L2 3262 3303 -10 231 78 0 98 chr11 50846000 50846051 -99937502 + AluJo SINE Alu 272 317 -3 1862 149 14 0 chr11 50846189 50846478 -99937075 - AluSx SINE Alu -19 293 1 1689 184 0 0 chr11 50846640 50846933 -99936620 - AluJo SINE Alu -14 298 6 231 82 265 0 chr11 50847034 50847083 -99936470 + Alu SINE Alu 239 300 0 312 135 0 0 chr11 50847121 50847177 -99936376 - Alu SINE Alu -6 296 252 2228 89 3 10 chr11 50847209 50847511 -99936042 - AluSg SINE Alu -10 300 1 600 306 143 24 chr11 50847564 50847936 -99935617 - L2 LINE L2 -71 3242 2827 2185 110 3 0 chr11 50848161 50848471 -99935082 - AluSx SINE Alu -1 311 1 1845 126 7 27 chr11 50848972 50849273 -99934280 + AluSg SINE Alu 1 295 -15 2109 123 57 21 chr11 50849421 50849755 -99933798 + THE1B LTR MaLR 19 364 0 1601 98 0 49 chr11 50849880 50850124 -99933429 - AluSx SINE Alu -60 252 21 204 40 0 0 chr11 50850132 50850157 -99933396 + (T)n Simple_repeat Simple_repeat 1 25 0 948 83 0 0 chr11 50850161 50850281 -99933272 - AluSq/x SINE Alu -192 121 2 742 218 26 92 chr11 50850366 50850503 -99933050 - AluJo SINE Alu -94 218 100 2384 77 0 0 chr11 50850503 50850814 -99932739 - AluY SINE Alu 0 311 1 742 218 26 92 chr11 50850814 50850905 -99932648 - AluJo SINE Alu -212 100 5 2078 114 13 0 chr11 50851348 50851685 -99931868 - AluSx SINE Alu 0 341 1 2127 96 3 13 chr11 50852548 50852849 -99930704 - AluSg SINE Alu -12 298 1 1740 150 0 11 chr11 50852924 50853097 -99930456 - AluSx SINE Alu 0 305 135 2315 81 3 3 chr11 50853097 50853406 -99930147 - AluSp SINE Alu -4 309 1 1740 150 0 11 chr11 50853406 50853540 -99930013 - AluSx SINE Alu -170 135 1 39 0 0 0 chr11 50853894 50853933 -99929620 + AT_rich Low_complexity Low_complexity 1 39 0 2208 86 0 0 chr11 50854163 50854455 -99929098 - AluSg SINE Alu -18 292 1 591 351 157 7 chr11 50854507 50854806 -99928747 - L2 LINE L2 -33 3239 2896 1695 125 16 56 chr11 50854888 50855047 -99928506 - AluJo SINE Alu -20 292 149 2239 90 3 6 chr11 50855047 50855358 -99928195 - AluSx SINE Alu -2 310 1 1695 125 16 56 chr11 50855358 50855501 -99928052 - AluJo SINE Alu -163 149 2 2246 63 7 23 chr11 50855561 50855864 -99927689 - AluSg SINE Alu -12 298 1 1770 121 21 7 chr11 50855971 50856252 -99927301 - AluSg SINE Alu -8 302 18 780 127 0 0 chr11 50856465 50856575 -99926978 - FLAM_C SINE Alu -32 111 2 2091 121 0 3 chr11 50856587 50856885 -99926668 - AluSp SINE Alu -16 297 1 1041 168 6 0 chr11 50857432 50857605 -99925948 - AluJb SINE Alu -12 300 127 198 0 0 0 chr11 50857611 50857633 -99925920 + (T)n Simple_repeat Simple_repeat 1 22 0 1078 189 20 5 chr11 50857645 50857841 -99925712 + MSTA LTR MaLR 1 199 -227 2043 126 7 0 chr11 50857842 50858143 -99925410 + AluSq SINE Alu 1 303 -10 1258 53 0 0 chr11 50858144 50858334 -99925219 + L1PA3 LINE L1 5995 6184 0 274 224 0 17 chr11 50858641 50858699 -99924854 + L2 LINE L2 3215 3271 -1 1465 117 5 31 chr11 50858723 50858946 -99924607 + MSTA LTR MaLR 185 401 -27 2288 109 0 0 chr11 50858959 50859271 -99924282 - AluSx SINE Alu 0 312 1 818 115 0 0 chr11 50859309 50859422 -99924131 - FLAM_C SINE Alu -30 113 1 701 311 58 8 chr11 50859709 50859950 -99923603 - MIR SINE MIR -1 261 9 1807 109 0 0 chr11 50859951 50860199 -99923354 - AluSq SINE Alu -65 248 1 703 276 11 75 chr11 50860341 50860466 -99923087 + MIR SINE MIR 2 101 -161 2125 119 0 0 chr11 50860466 50860768 -99922785 - AluSx SINE Alu -10 302 1 703 276 11 75 chr11 50860768 50860921 -99922632 + MIR SINE MIR 101 262 0 1932 114 0 34 chr11 50862157 50862455 -99921098 + AluSx SINE Alu 23 310 -2 26 0 0 0 chr11 50862563 50862589 -99920964 + AT_rich Low_complexity Low_complexity 1 26 0 2320 86 0 3 chr11 50862589 50862893 -99920660 + AluY SINE Alu 1 303 -8 243 0 0 0 chr11 50862893 50862920 -99920633 + (TA)n Simple_repeat Simple_repeat 1 27 0 192 305 17 0 chr11 50863460 50863519 -99920034 - L2 LINE L2 0 3313 3254 2198 98 0 3 chr11 50863568 50863873 -99919680 - AluY SINE Alu -5 306 3 367 237 31 0 chr11 50863877 50863974 -99919579 - L1M4 LINE L1 -1002 5642 5543 1594 190 0 7 chr11 50863989 50864284 -99919269 - AluJo SINE Alu -18 294 2 231 188 0 0 chr11 50864294 50864342 -99919211 + CT-rich Low_complexity Low_complexity 1 48 0 902 148 26 0 chr11 50864342 50864497 -99919056 - FRAM SINE Alu -23 153 1 1822 230 28 0 chr11 50864498 50864929 -99918624 - L1M4 LINE L1 -1103 5541 5099 312 192 0 0 chr11 50864927 50864979 -99918574 - L1M4 LINE L1 -2068 4576 4525 * 783 292 70 43 chr11 50864975 50865073 -99918480 - L1M4 LINE L1 -5627 915 821 1602 172 13 32 chr11 50865073 50865358 -99918195 + AluJb SINE Alu 1 281 -31 228 67 0 0 chr11 50865358 50865388 -99918165 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 1602 172 13 32 chr11 50865388 50865416 -99918137 + AluJb SINE Alu 281 308 -4 783 292 70 43 chr11 50865416 50865732 -99917821 - L1M4 LINE L1 -5721 821 490 2250 96 0 3 chr11 50866032 50866345 -99917208 + AluSx SINE Alu 1 312 0 2179 122 0 0 chr11 50866358 50866661 -99916892 + AluSq SINE Alu 1 303 -10 1449 182 7 7 chr11 50866679 50866954 -99916599 + AluJb SINE Alu 22 296 -16 400 188 47 0 chr11 50866955 50867040 -99916513 - L1M4 LINE L1 -2515 3631 3543 548 114 13 0 chr11 50867048 50867127 -99916426 + AluS SINE Alu 1 80 -233 1054 199 4 26 chr11 50867227 50867487 -99916066 + AluSx SINE Alu 52 307 -5 2266 103 0 0 chr11 50867487 50867797 -99915756 + AluY SINE Alu 1 310 -1 799 138 73 87 chr11 50868453 50868671 -99914882 - MER20 DNA MER1_type -4 215 1 2037 104 17 17 chr11 50868750 50869049 -99914504 + AluSp SINE Alu 1 299 -14 2165 104 0 9 chr11 50869221 50869537 -99914016 + AluSq SINE Alu 1 313 0 1735 132 3 21 chr11 50869606 50869921 -99913632 + AluSx SINE Alu 1 310 0 1648 162 10 39 chr11 50870272 50870408 -99913145 + AluSx SINE Alu 1 139 -173 2178 125 0 0 chr11 50870408 50870719 -99912834 + AluSx SINE Alu 1 311 -1 1648 162 10 39 chr11 50870719 50870890 -99912663 + AluSx SINE Alu 139 299 -13 1711 147 14 20 chr11 50871010 50871303 -99912250 + AluSx SINE Alu 9 299 -13 875 133 0 22 chr11 50871312 50871447 -99912106 + FLAM_C SINE Alu 2 133 0 211 296 0 12 chr11 50871447 50871519 -99912034 + GA-rich Low_complexity Low_complexity 8 80 0 1862 100 30 37 chr11 50871939 50872239 -99911314 + AluSg SINE Alu 1 298 -12 2130 99 3 0 chr11 50872247 50872565 -99910988 + AluSp SINE Alu 1 319 0 761 246 25 65 chr11 50872579 50872900 -99910653 + AluJb SINE Alu 1 308 -4 5398 56 1 3 chr11 50873624 50874288 -99909265 - L1PA6 LINE L1 0 6154 5492 2163 53 32 3 chr11 50874309 50874591 -99908962 - AluY SINE Alu -21 290 1 1986 116 0 0 chr11 50874591 50874867 -99908686 - AluSx SINE Alu -29 283 7 884 198 78 33 chr11 50874920 50875162 -99908391 - AluJo SINE Alu -30 282 30 1294 188 59 14 chr11 50875167 50875454 -99908099 - AluJb SINE Alu -11 301 2 608 196 9 0 chr11 50875473 50875580 -99907973 - FLAM_C SINE Alu -34 109 2 814 133 16 8 chr11 50875779 50875907 -99907646 - FLAM_C SINE Alu 0 133 5 1561 112 123 4 chr11 50875990 50876258 -99907295 + AluJb SINE Alu 1 300 -12 1909 97 11 7 chr11 50877693 50877972 -99905581 + AluSg SINE Alu 16 295 -15 235 216 135 14 chr11 50878529 50878603 -99904950 - MIR SINE MIR 0 262 180 505 194 11 0 chr11 50878622 50878715 -99904838 - AluJo/FRAM SINE Alu -21 291 198 2131 103 0 0 chr11 50878717 50879009 -99904544 - AluSx SINE Alu -20 292 1 27 0 0 0 chr11 50879009 50879036 -99904517 + AT_rich Low_complexity Low_complexity 1 27 0 1685 125 11 4 chr11 50879036 50879300 -99904253 - AluSc SINE Alu -21 288 23 256 158 175 18 chr11 50879301 50879358 -99904195 - AluSx SINE Alu -11 291 226 2080 171 68 34 chr11 50879375 50879819 -99903734 + LTR2B LTR ERV1 32 490 0 1544 119 18 0 chr11 50879819 50880046 -99903507 - AluSx SINE Alu -81 231 1 2237 98 7 3 chr11 50880049 50880346 -99903207 - AluSq SINE Alu -15 298 1 836 103 0 0 chr11 50880362 50880478 -99903075 - AluY SINE Alu -2 309 194 290 215 47 28 chr11 50880582 50880689 -99902864 + L1MC4 LINE L1 7923 8031 -11 1950 133 0 36 chr11 50880789 50881097 -99902456 + AluJb SINE Alu 1 297 -15 617 151 132 0 chr11 50881133 50881239 -99902314 + FLAM_C SINE Alu 2 121 -22 342 0 0 0 chr11 50881239 50881277 -99902276 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2302 92 17 0 chr11 50882000 50882293 -99901260 + AluSx SINE Alu 1 298 -14 529 209 91 0 chr11 50882388 50882498 -99901055 - 5S rRNA rRNA 0 121 2 716 180 8 8 chr11 50882953 50883081 -99900472 + FLAM_C SINE Alu 3 130 -3 337 180 16 0 chr11 50883169 50883230 -99900323 + L2 LINE L2 3249 3310 -3 2104 121 0 13 chr11 50883232 50883530 -99900023 - AluSx SINE Alu -18 294 1 2431 67 3 10 chr11 50883544 50883842 -99899711 - AluY SINE Alu -15 296 1 2048 126 25 0 chr11 50883925 50884210 -99899343 - AluSx SINE Alu -20 292 1 567 0 0 0 chr11 50884887 50884950 -99898603 + (CA)n Simple_repeat Simple_repeat 2 64 0 2194 113 0 3 chr11 50885480 50885780 -99897773 + AluSq SINE Alu 1 299 -14 2210 105 7 7 chr11 50886102 50886406 -99897147 + AluSx SINE Alu 6 309 -3 2163 117 3 3 chr11 50886915 50887215 -99896338 + AluSx SINE Alu 1 300 -12 847 155 87 19 chr11 50887215 50887376 -99896177 + AluJb SINE Alu 134 305 -7 461 258 25 25 chr11 50887403 50887562 -99895991 + L1ME4a LINE L1 5522 5680 -441 2068 120 48 0 chr11 50887563 50887855 -99895698 + AluSx SINE Alu 1 306 -6 325 224 112 37 chr11 50888004 50888138 -99895415 + L1ME4a LINE L1 5975 6118 -3 1809 174 27 3 chr11 50888293 50888587 -99894966 - AluJb SINE Alu -11 301 1 1990 153 3 0 chr11 50888641 50888942 -99894611 - AluSx SINE Alu -10 302 1 1902 114 100 0 chr11 50889323 50889594 -99893959 + AluSx SINE Alu 1 298 -14 1142 109 23 6 chr11 50889766 50889940 -99893613 - L1PA11 LINE L1 -7 6167 5991 249 202 147 37 chr11 50889983 50890092 -99893461 - L2 LINE L2 0 3313 3193 1512 169 16 0 chr11 50891644 50891886 -99891667 + AluJb SINE Alu 1 246 -66 2558 72 0 0 chr11 50891886 50892191 -99891362 + AluY SINE Alu 1 305 -6 281 189 0 0 chr11 50892193 50892277 -99891276 + AluJb SINE Alu 238 302 0 1148 180 96 114 chr11 50892280 50892390 -99891163 + L1MC4 LINE L1 7552 7662 -380 1521 142 15 11 chr11 50892390 50892650 -99890903 + AluSx SINE Alu 36 296 -16 1148 180 96 114 chr11 50892650 50893039 -99890514 + L1MC4 LINE L1 7662 8042 0 2036 135 44 0 chr11 50893046 50893342 -99890211 + AluSx SINE Alu 1 309 -3 312 239 0 0 chr11 50893707 50893774 -99889779 + AluJ/monomer SINE Alu 235 301 0 281 277 116 0 chr11 50894680 50894792 -99888761 + L3 LINE CR1 1161 1285 -292 186 357 39 16 chr11 50894836 50894965 -99888588 + L3 LINE CR1 1425 1556 -21 744 147 0 0 chr11 50895029 50895138 -99888415 + AluSq/x SINE Alu 1 109 -204 849 132 7 22 chr11 50895246 50895382 -99888171 - FLAM_C SINE Alu -9 134 1 1677 172 0 27 chr11 50895415 50895711 -99887842 - AluJb SINE Alu -13 299 12 2486 66 0 13 chr11 50895781 50896083 -99887470 - AluSc SINE Alu -11 298 1 243 0 0 0 chr11 50896979 50897006 -99886547 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 2351 88 3 0 chr11 50897470 50897765 -99885788 + AluSx SINE Alu 1 296 -16 408 268 165 27 chr11 50898350 50898574 -99884979 - MIR SINE MIR 0 262 8 561 123 37 0 chr11 50898802 50898883 -99884670 - HY4 scRNA scRNA -9 84 1 1112 153 79 52 chr11 50899036 50899130 -99884423 - AluJo SINE Alu -77 235 145 2237 107 4 0 chr11 50899130 50899440 -99884113 - AluSg SINE Alu 0 311 1 1112 153 79 52 chr11 50899440 50899573 -99883980 - AluJo SINE Alu -167 145 1 2060 117 13 19 chr11 50899943 50900250 -99883303 - AluSx SINE Alu -7 305 1 2322 95 0 3 chr11 50900852 50901146 -99882407 - AluSg SINE Alu -17 293 1 4382 55 9 0 chr11 50901165 50901706 -99881847 - L1PA5 LINE L1 0 6154 5609 262 62 0 0 chr11 50901706 50901738 -99881815 - U3 snRNA snRNA -185 32 1 1695 136 64 36 chr11 50901786 50902116 -99881437 - L1MB2 LINE L1 -3 6168 5830 1741 96 0 8 chr11 50902118 50902358 -99881195 - AluY SINE Alu -5 306 69 2230 98 3 3 chr11 50902463 50902749 -99880804 - AluSx SINE Alu -14 298 13 1151 80 0 0 chr11 50902755 50902892 -99880661 - AluSq/x SINE Alu -176 137 1 331 275 0 0 chr11 50903068 50903148 -99880405 - MER112 DNA MER1_type 0 260 181 279 0 0 0 chr11 50903148 50903179 -99880374 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 439 261 22 0 chr11 50903188 50903280 -99880273 - FLAM_A SINE Alu -48 94 1 408 291 26 0 chr11 50903323 50903440 -99880113 + L3 LINE CR1 920 1039 -538 1076 169 13 84 chr11 50903493 50903579 -99879974 + Charlie1a DNA MER1_type 1 92 -2669 2148 120 0 0 chr11 50903579 50903871 -99879682 - AluSx SINE Alu -20 292 1 1076 169 13 84 chr11 50903871 50904009 -99879544 + Charlie1a DNA MER1_type 92 209 -1246 242 200 0 0 chr11 50904009 50904064 -99879489 + L1M4 LINE L1 3938 3992 -2154 787 197 100 52 chr11 50904169 50904438 -99879115 + LTR8A LTR ERV1 397 678 -49 1664 165 52 23 chr11 50904477 50904823 -99878730 + L1MB8 LINE L1 5821 6176 -2 2210 116 0 10 chr11 50904833 50905143 -99878410 + AluSq SINE Alu 1 307 -6 723 208 60 6 chr11 50905143 50905301 -99878252 + Charlie1a DNA MER1_type 564 733 -722 417 86 17 0 chr11 50905318 50905376 -99878177 + MER68 LTR ERV1 1 59 -503 521 101 0 0 chr11 50905376 50905445 -99878108 + AluSg SINE Alu 34 102 -208 1547 205 13 30 chr11 50905445 50905743 -99877810 + MER68 LTR ERV1 270 562 0 595 119 147 0 chr11 50905790 50905899 -99877654 + Charlie1a DNA MER1_type 1330 1454 -1 298 230 11 0 chr11 50906029 50906116 -99877437 + L3 LINE CR1 1215 1302 -275 213 226 161 32 chr11 50906757 50906850 -99876703 + MIR SINE MIR 158 262 0 2200 121 0 3 chr11 50907626 50907924 -99875629 + AluSx SINE Alu 1 297 -15 1256 156 23 23 chr11 50908079 50908297 -99875256 + AluJb SINE Alu 85 302 -10 234 179 134 15 chr11 50908297 50908364 -99875189 + L1MC4 LINE L1 7968 8042 0 21 0 0 0 chr11 50908734 50908755 -99874798 + AT_rich Low_complexity Low_complexity 1 21 0 908 247 144 42 chr11 50909551 50910057 -99873496 - L2 LINE L2 -1 3312 2756 2105 131 7 7 chr11 50910087 50910385 -99873168 + AluSx SINE Alu 1 298 -14 1784 107 0 0 chr11 50910385 50910610 -99872943 + AluSg SINE Alu 1 225 -85 2079 121 3 0 chr11 50910748 50911046 -99872507 - AluSp SINE Alu -14 299 1 659 207 52 0 chr11 50911049 50911184 -99872369 + AluSg/x SINE Alu 160 301 -11 2188 114 3 10 chr11 50911345 50911643 -99871910 - AluSc SINE Alu -13 296 1 2143 135 0 0 chr11 50911646 50911942 -99871611 - AluJb SINE Alu -16 296 1 233 133 0 0 chr11 50912110 50912155 -99871398 + Alu SINE Alu 122 166 0 306 313 60 42 chr11 50912189 50912229 -99871324 - L2 LINE L2 -569 2745 2707 2321 96 3 0 chr11 50912229 50912522 -99871031 - AluSp SINE Alu -19 294 1 306 313 60 42 chr11 50912522 50912647 -99870906 - L2 LINE L2 -607 2707 2577 195 268 42 14 chr11 50912845 50912916 -99870637 + L3 LINE CR1 1457 1529 -48 202 206 0 0 chr11 50914130 50914164 -99869389 + (CA)n Simple_repeat Simple_repeat 1 34 0 31 26 0 0 chr11 50914201 50914239 -99869314 + AT_rich Low_complexity Low_complexity 1 38 0 2074 118 13 29 chr11 50914813 50915128 -99868425 - AluJo SINE Alu -2 310 1 509 304 85 7 chr11 50915190 50915460 -99868093 + L2 LINE L2 1945 2235 -1079 927 229 178 55 chr11 50915465 50915839 -99867714 + L2 LINE L2 260 701 -2613 1782 189 10 0 chr11 50915839 50916140 -99867413 + AluJo SINE Alu 1 304 -8 927 229 178 55 chr11 50916140 50916220 -99867333 + L2 LINE L2 701 770 -2544 3604 251 98 26 chr11 50916224 50916673 -99866880 + L2 LINE L2 1644 2059 -1254 804 209 40 76 chr11 50916673 50916898 -99866655 + MER20 DNA MER1_type 2 218 -1 3604 251 98 26 chr11 50916898 50917844 -99865709 + L2 LINE L2 2059 2935 -378 4075 94 18 0 chr11 50917844 50918266 -99865287 + MER41A LTR ERV1 1 437 -117 2242 108 3 10 chr11 50918266 50918571 -99864982 - AluSq SINE Alu -10 303 1 4075 94 18 0 chr11 50918571 50918692 -99864861 + MER41A LTR ERV1 437 554 0 3604 251 98 26 chr11 50918692 50918832 -99864721 + L2 LINE L2 2935 3063 -250 858 190 229 58 chr11 50918832 50918982 -99864571 - AluJb SINE Alu 0 302 179 1699 194 0 22 chr11 50918982 50919301 -99864252 + AluJb SINE Alu 1 312 0 858 190 229 58 chr11 50919301 50919408 -99864145 - AluJb SINE Alu -123 179 1 3604 251 98 26 chr11 50919408 50919428 -99864125 + L2 LINE L2 3063 3308 -5 575 311 65 51 chr11 50919426 50919796 -99863757 + L2 LINE L2 2236 2610 -704 * 879 155 43 64 chr11 50919896 50920083 -99863470 - L1PA16 LINE L1 -22 6144 5962 450 294 57 44 chr11 50920116 50920470 -99863083 + L2 LINE L2 2736 3092 -180 236 234 104 0 chr11 50920584 50920661 -99862892 + L2 LINE L2 3228 3312 -1 747 237 227 65 chr11 50922275 50922589 -99860964 + L2 LINE L2 816 1078 -2236 2005 105 0 37 chr11 50922589 50922696 -99860857 + AluSq SINE Alu 29 138 -175 2442 78 7 3 chr11 50922696 50923005 -99860548 + AluSg SINE Alu 1 310 0 2005 105 0 37 chr11 50923005 50923191 -99860362 + AluSq SINE Alu 138 311 -2 747 237 227 65 chr11 50923191 50923395 -99860158 + L2 LINE L2 1078 1418 -1896 917 203 106 13 chr11 50923395 50923631 -99859922 + AluJo SINE Alu 43 300 -12 2102 244 161 28 chr11 50923652 50923956 -99859597 + L2 LINE L2 1452 1714 -1600 468 0 0 0 chr11 50923956 50924008 -99859545 + (TA)n Simple_repeat Simple_repeat 2 53 0 2180 106 0 10 chr11 50924008 50924300 -99859253 - AluSq SINE Alu -24 289 1 2102 244 161 28 chr11 50924300 50924407 -99859146 + L2 LINE L2 1714 1805 -1509 1890 146 0 23 chr11 50924407 50924708 -99858845 - AluJo SINE Alu -18 294 1 2102 244 161 28 chr11 50924708 50925163 -99858390 + L2 LINE L2 1805 2436 -878 1405 107 0 11 chr11 50925163 50925350 -99858203 - AluY SINE Alu -126 185 1 382 300 62 33 chr11 50925445 50925718 -99857835 + L2 LINE L2 2224 2504 -810 742 272 98 13 chr11 50925720 50925995 -99857558 + MLT1H1 LTR MaLR 1 306 -284 390 222 0 6 chr11 50926029 50926118 -99857435 + MLT1G1 LTR MaLR 437 535 -60 640 105 0 48 chr11 50926119 50926139 -99857414 - AluSx SINE Alu -12 297 278 180 0 0 0 chr11 50926139 50926159 -99857394 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 640 105 0 48 chr11 50926159 50926243 -99857310 - AluSx SINE Alu -31 278 198 1022 75 0 0 chr11 50926243 50926363 -99857190 - AluSx SINE Alu -193 120 1 2214 99 0 10 chr11 50926759 50927053 -99856500 - AluSg SINE Alu -17 293 3 2198 115 0 7 chr11 50927055 50927360 -99856193 - AluSg SINE Alu -7 303 1 417 211 58 0 chr11 50927440 50927544 -99856009 + MER103 DNA DNA 11 120 -46 616 158 0 0 chr11 50927685 50927780 -99855773 + AluJ/FLAM SINE Alu 1 95 -217 2274 107 3 0 chr11 50928234 50928532 -99855021 - AluSx SINE Alu -13 299 1 266 86 0 0 chr11 50928567 50928602 -99854951 - AluSq/x SINE Alu -194 109 75 1160 141 73 41 chr11 50928609 50928829 -99854724 + AluJb SINE Alu 69 295 -17 2128 123 0 7 chr11 50928889 50929182 -99854371 - AluSx SINE Alu -21 291 1 2340 93 0 3 chr11 50930272 50930572 -99852981 - AluSx SINE Alu -13 299 1 2247 106 10 0 chr11 50930814 50931107 -99852446 + AluSx SINE Alu 9 304 -8 2396 102 0 0 chr11 50931107 50931410 -99852143 + AluSg SINE Alu 1 303 -7 572 207 50 0 chr11 50931684 50931805 -99851748 + MIR3 SINE MIR 51 177 -31 272 237 86 43 chr11 50931907 50932000 -99851553 + L1ME4a LINE L1 5600 5696 -425 2066 88 20 14 chr11 50932003 50932299 -99851254 + AluSx SINE Alu 4 301 -11 755 111 4 205 chr11 50932331 50932461 -99851092 - L1MC3 LINE L1 -6 7779 7625 3591 112 63 8 chr11 50932461 50932986 -99850567 + MER41C LTR ERV1 1 554 0 755 111 4 205 chr11 50932986 50933034 -99850519 - L1MC3 LINE L1 -160 7625 7655 2029 120 0 0 chr11 50933034 50933317 -99850236 - AluSx SINE Alu -25 287 5 755 111 4 205 chr11 50933317 50933371 -99850182 - L1MC3 LINE L1 -129 7656 7593 1374 153 0 0 chr11 50933385 50933594 -99849959 - AluJo SINE Alu -30 282 74 1096 152 85 49 chr11 50933594 50933818 -99849735 - L1MC3 LINE L1 -332 7453 7222 2198 84 0 14 chr11 50933825 50934121 -99849432 - AluSg SINE Alu -18 292 1 1684 109 8 0 chr11 50934229 50934467 -99849086 + AluSx SINE Alu 60 299 -13 424 200 82 53 chr11 50934630 50934800 -99848753 + L1ME4a LINE L1 5944 6118 -3 456 289 74 13 chr11 50935404 50935553 -99848000 + MIR SINE MIR 47 204 -58 202 345 47 35 chr11 50935744 50935915 -99847638 + L2 LINE L2 2826 2998 -274 243 151 0 75 chr11 50936019 50936072 -99847481 - L2 LINE L2 0 3313 3265 274 218 238 50 chr11 50936100 50936201 -99847352 + L2 LINE L2 3152 3271 -1 2249 111 0 0 chr11 50937037 50937344 -99846209 + AluSq SINE Alu 1 307 -6 1035 127 19 0 chr11 50937344 50937501 -99846052 + AluSg/x SINE Alu 132 291 -18 1220 188 3 123 chr11 50937522 50937655 -99845898 + AluJo SINE Alu 2 75 -227 2262 72 0 3 chr11 50937655 50937947 -99845606 + AluY SINE Alu 1 291 -20 1220 188 3 123 chr11 50937947 50938137 -99845416 + AluJo SINE Alu 75 286 -16 2020 117 3 3 chr11 50938661 50938960 -99844593 - AluSx SINE Alu -13 299 1 24 0 0 0 chr11 50939406 50939430 -99844123 + AT_rich Low_complexity Low_complexity 1 24 0 2121 100 0 3 chr11 50939439 50939729 -99843824 + AluSc SINE Alu 1 289 -20 507 82 0 0 chr11 50939829 50939902 -99843651 - L1MA5A LINE L1 -2 6295 6223 1107 79 0 20 chr11 50939902 50940054 -99843499 + AluJb SINE Alu 1 149 -163 330 192 51 26 chr11 50940158 50940236 -99843317 + MLT1K LTR MaLR 508 587 -1 1916 91 3 71 chr11 50940278 50940586 -99842967 - AluSx SINE Alu -17 295 9 197 302 38 57 chr11 50940701 50940807 -99842746 - L2 LINE L2 -578 2736 2633 186 191 0 0 chr11 50941110 50941157 -99842396 + T-rich Low_complexity Low_complexity 1 47 0 246 32 0 0 chr11 50941530 50941561 -99841992 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1876 117 0 11 chr11 50941563 50941837 -99841716 - AluSx SINE Alu -19 293 23 708 215 98 0 chr11 50941942 50942105 -99841448 - MIR SINE MIR 0 262 84 416 296 45 23 chr11 50942874 50943006 -99840547 + L2 LINE L2 3118 3252 -20 734 127 119 0 chr11 50943017 50943135 -99840418 + FLAM_C SINE Alu 1 132 -1 1164 138 0 0 chr11 50943183 50943364 -99840189 - AluSg/x SINE Alu -2 308 128 463 186 32 48 chr11 50943467 50943591 -99839962 + L2 LINE L2 3134 3255 -58 551 158 23 15 chr11 50943618 50943751 -99839802 + GA-rich Low_complexity Low_complexity 4 137 0 2062 105 3 3 chr11 50943870 50944164 -99839389 - AluSx SINE Alu -18 294 1 1786 113 27 14 chr11 50944169 50944461 -99839092 - L1MB3 LINE L1 0 6183 5888 713 218 96 0 chr11 50944571 50944727 -99838826 + MER45A DNA AcHobo 8 178 0 417 260 10 10 chr11 50944727 50944827 -99838726 + L2 LINE L2 2231 2330 -984 3590 111 143 38 chr11 50944834 50945800 -99837753 + MER11A LTR ERVK 1 1142 -94 2212 95 0 0 chr11 50945800 50946095 -99837458 + AluY SINE Alu 1 295 -16 3590 111 143 38 chr11 50946095 50946197 -99837356 + MER11A LTR ERVK 1142 1232 -4 891 216 94 9 chr11 50946205 50946418 -99837135 + AluJo SINE Alu 1 231 -81 1390 156 43 0 chr11 50946421 50946652 -99836901 + AluSx SINE Alu 3 243 -69 32 0 0 0 chr11 50946672 50946704 -99836849 + AT_rich Low_complexity Low_complexity 1 32 0 1231 234 35 0 chr11 50946887 50947144 -99836409 + LTR53 LTR ERVL 254 519 0 2007 131 10 0 chr11 50947171 50947468 -99836085 + AluSx SINE Alu 1 300 -12 1980 118 3 10 chr11 50947883 50948179 -99835374 + AluSq SINE Alu 1 294 -19 197 250 0 0 chr11 50948202 50948246 -99835307 + L2 LINE L2 3211 3254 -18 1585 162 9 41 chr11 50948381 50948810 -99834743 + AluJb SINE Alu 1 419 0 201 74 0 0 chr11 50948817 50948844 -99834709 + (GGGGA)n Simple_repeat Simple_repeat 5 31 0 347 248 9 64 chr11 50948888 50948997 -99834556 + MIR SINE MIR 159 261 -1 2079 136 0 3 chr11 50950208 50950518 -99833035 + AluSx SINE Alu 1 309 -3 2121 101 7 0 chr11 50950669 50950966 -99832587 - AluSp SINE Alu -10 303 5 605 106 0 0 chr11 50951067 50951152 -99832401 + AluSp/q SINE Alu 220 304 -9 824 106 0 32 chr11 50951161 50951284 -99832269 + AluSp SINE Alu 1 119 -194 1035 111 0 0 chr11 50951297 50951441 -99832112 - AluSg SINE Alu -166 144 1 1023 67 15 0 chr11 50951625 50951760 -99831793 + AluSp/q SINE Alu 164 300 -13 618 161 8 40 chr11 50951791 50951948 -99831605 + L1MC4 LINE L1 7880 7995 0 328 267 57 9 chr11 50952270 50952375 -99831178 - MIR SINE MIR -85 177 68 2076 102 0 13 chr11 50952403 50952706 -99830847 + AluSx SINE Alu 5 303 -9 1656 134 19 104 chr11 50952733 50952946 -99830607 - MER2 DNA MER2_type -10 335 164 2173 82 0 7 chr11 50952946 50953240 -99830313 + AluSc SINE Alu 1 292 -17 1656 134 19 104 chr11 50953240 50953392 -99830161 - MER2 DNA MER2_type -181 164 1 293 239 45 11 chr11 50953400 50953488 -99830065 - MIR SINE MIR -4 258 168 754 147 0 0 chr11 50953804 50953913 -99829640 + FLAM_C SINE Alu 2 110 -33 204 282 58 0 chr11 50953934 50953951 -99829602 + GA-rich Low_complexity Low_complexity 4 19 -93 1971 121 3 26 chr11 50953951 50954257 -99829296 + AluSx SINE Alu 14 312 0 204 282 58 0 chr11 50954257 50954342 -99829211 + GA-rich Low_complexity Low_complexity 19 112 0 879 250 111 111 chr11 50954380 50954542 -99829011 + L2 LINE L2 2464 2625 -688 2185 86 6 46 chr11 50954542 50954867 -99828686 - AluSx SINE Alu 0 312 1 879 250 111 111 chr11 50954867 50954995 -99828558 + L2 LINE L2 2625 2752 -561 1775 150 7 0 chr11 50954995 50955268 -99828285 - AluJb SINE Alu -32 280 6 2038 133 0 3 chr11 50955276 50955578 -99827975 - AluJb SINE Alu -11 301 1 879 250 111 111 chr11 50955578 50956107 -99827446 + L2 LINE L2 2759 3278 -35 2074 108 3 10 chr11 50956107 50956402 -99827151 + AluSx SINE Alu 1 293 -19 879 250 111 111 chr11 50956402 50956437 -99827116 + L2 LINE L2 3278 3312 -1 1970 140 7 3 chr11 50956714 50957021 -99826532 + AluJb SINE Alu 1 308 -4 2045 122 0 3 chr11 50957298 50957593 -99825960 + AluSx SINE Alu 1 294 -18 400 191 43 78 chr11 50957611 50957726 -99825827 - MIR3 SINE MIR -11 197 87 896 136 0 0 chr11 50957843 50957983 -99825570 - FRAM SINE Alu -7 169 30 2429 69 0 0 chr11 50958149 50958455 -99825098 - AluSp SINE Alu -7 306 1 528 284 167 35 chr11 50958457 50958578 -99824975 - L2 LINE L2 0 3313 3209 219 103 0 0 chr11 50958578 50958617 -99824936 + (TG)n Simple_repeat Simple_repeat 2 40 0 528 284 167 35 chr11 50958617 50958777 -99824776 - L2 LINE L2 -104 3209 2995 546 301 23 32 chr11 50959063 50959282 -99824271 - MIR SINE MIR -25 237 21 220 220 0 85 chr11 50959357 50959416 -99824137 - MIR3 SINE MIR -31 177 124 264 275 66 33 chr11 50959482 50959573 -99823980 - MIR SINE MIR -95 113 20 203 308 98 30 chr11 50959827 50959960 -99823593 - L2 LINE L2 -19 3253 3112 1456 158 92 15 chr11 50960127 50960400 -99823153 + AluJb SINE Alu 1 294 -18 2005 94 0 4 chr11 50960426 50960692 -99822861 + AluSq SINE Alu 1 265 -48 414 0 0 0 chr11 50960708 50960754 -99822799 + (CA)n Simple_repeat Simple_repeat 2 47 0 2098 59 24 3 chr11 50960949 50961236 -99822317 - AluSp SINE Alu -20 293 1 295 263 203 23 chr11 50961341 50961474 -99822079 - MIR SINE MIR -72 190 34 246 32 0 0 chr11 50962519 50962550 -99821003 + (CA)n Simple_repeat Simple_repeat 2 32 0 837 223 5 64 chr11 50962579 50962661 -99820892 - AluJb SINE Alu -105 207 122 1456 113 0 9 chr11 50962661 50962874 -99820679 - AluSg/x SINE Alu -16 294 84 2014 113 6 22 chr11 50962878 50963189 -99820364 - AluSx SINE Alu -6 306 1 837 223 5 64 chr11 50963189 50963321 -99820232 - AluJb SINE Alu -193 119 1 1745 142 6 31 chr11 50963321 50963638 -99819915 - AluJo SINE Alu -3 309 1 833 254 136 31 chr11 50963644 50963967 -99819586 - L2 LINE L2 -17 3296 2940 1918 135 17 0 chr11 50963971 50964268 -99819285 + AluSx SINE Alu 1 302 -10 226 273 76 0 chr11 50964273 50964339 -99819214 - L2 LINE L2 -354 2960 2890 523 216 142 0 chr11 50964366 50964514 -99819039 - MIR SINE MIR -88 174 6 1033 139 12 0 chr11 50965150 50965316 -99818237 + AluJb SINE Alu 128 295 -17 2187 98 0 3 chr11 50965318 50965623 -99817930 + AluSq SINE Alu 1 304 -9 545 217 98 28 chr11 50965642 50965785 -99817768 - MIR SINE MIR 0 262 110 213 272 138 40 chr11 50965802 50965997 -99817556 - L2 LINE L2 -314 2958 2731 2201 101 0 7 chr11 50966027 50966334 -99817219 - AluSq SINE Alu -8 305 1 1981 118 0 35 chr11 50966718 50967033 -99816520 + AluSx SINE Alu 1 304 -8 281 189 38 0 chr11 50967064 50967117 -99816436 + MLT1L LTR MaLR 1 55 -560 2000 146 7 0 chr11 50967134 50967443 -99816110 + AluJb SINE Alu 2 312 0 2217 115 0 3 chr11 50967452 50967765 -99815788 + AluSq SINE Alu 1 312 -1 2109 109 3 6 chr11 50967765 50968075 -99815478 + AluSg SINE Alu 1 310 0 304 200 189 11 chr11 50968185 50968280 -99815273 + MLT1L LTR MaLR 223 334 -281 512 265 50 45 chr11 50968406 50968606 -99814947 + MLT1K LTR MaLR 387 587 -1 2062 117 7 0 chr11 50968629 50968920 -99814633 - AluSx SINE Alu -19 293 1 2230 84 10 0 chr11 50969255 50969565 -99813988 + AluSp SINE Alu 1 313 0 271 86 0 0 chr11 50969766 50969801 -99813752 - MER74A LTR ERVL -244 314 280 756 205 46 13 chr11 50969801 50969952 -99813601 + FRAM SINE Alu 1 154 -22 1916 103 25 121 chr11 50969983 50970348 -99813205 + L1MB5 LINE L1 5799 6197 23 2036 119 0 3 chr11 50970348 50970641 -99812912 - AluSq SINE Alu -21 292 1 827 143 0 30 chr11 50970641 50970774 -99812779 - AluJo/FLAM SINE Alu -172 130 2 1916 103 25 121 chr11 50970774 50970813 -99812740 + L1MB5 LINE L1 6124 6165 -9 286 31 0 0 chr11 50971041 50971073 -99812480 - U2 snRNA snRNA -152 36 5 1851 220 67 53 chr11 50971078 50971304 -99812249 - MLT1E LTR MaLR 0 593 372 2377 83 0 3 chr11 50971304 50971616 -99811937 - AluSp SINE Alu -2 311 1 1851 220 67 53 chr11 50971616 50971898 -99811655 - MLT1E LTR MaLR -221 372 78 481 215 5 153 chr11 50971966 50972175 -99811378 - MIR SINE MIR -13 249 72 189 289 58 0 chr11 50972210 50972262 -99811291 - MIR SINE MIR -161 101 47 2094 114 0 13 chr11 50972649 50972955 -99810598 + AluSx SINE Alu 1 302 -10 1913 96 14 38 chr11 50973084 50973405 -99810148 + AluSx SINE Alu 1 314 0 1206 99 0 0 chr11 50973407 50973569 -99809984 + AluSg/x SINE Alu 133 294 -16 268 151 123 14 chr11 50973573 50973646 -99809907 - L1ME LINE L1 -252 5869 5789 2183 130 0 0 chr11 50973854 50974162 -99809391 + AluSx SINE Alu 1 308 -4 327 313 99 23 chr11 50974296 50974429 -99809124 - MIR SINE MIR -63 145 20 477 198 21 0 chr11 50974449 50974545 -99809008 + MER5A DNA MER1_type 15 112 -77 200 294 39 0 chr11 50974917 50974968 -99808585 + MIR SINE MIR 51 103 -105 193 358 0 45 chr11 50975246 50975313 -99808240 + L3 LINE CR1 1513 1576 -1 990 118 0 6 chr11 50975428 50975597 -99807956 + L1MA7 LINE L1 6124 6291 0 1994 113 4 0 chr11 50975603 50975877 -99807676 + AluSx SINE Alu 1 275 -37 212 0 36 0 chr11 50975885 50975913 -99807640 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 186 43 0 0 chr11 50975912 50975935 -99807618 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 306 302 131 37 chr11 50975942 50976187 -99807366 - L2 LINE L2 -201 3071 2804 1982 94 0 50 chr11 50976962 50977260 -99806293 + AluSq SINE Alu 7 289 -24 23 0 0 0 chr11 50977261 50977284 -99806269 + AT_rich Low_complexity Low_complexity 1 23 0 1812 109 0 0 chr11 50977586 50977843 -99805710 - AluSx SINE Alu -18 294 38 1970 93 61 0 chr11 50977890 50978169 -99805384 - AluSp SINE Alu -17 296 1 622 279 22 33 chr11 50978171 50978354 -99805199 + MIR SINE MIR 77 257 -5 633 117 11 0 chr11 50978423 50978517 -99805036 + L1MCa LINE L1 20 114 -6312 5403 102 25 16 chr11 50978517 50979986 -99803567 + SVA Other Other 9 1047 -339 474 160 62 113 chr11 50979996 50980127 -99803426 + L1MCa LINE L1 1741 1860 -4566 885 129 0 50 chr11 50980127 50980267 -99803286 + FLAM_A SINE Alu 1 133 0 474 160 62 113 chr11 50980267 50980329 -99803224 + L1MCa LINE L1 1860 1924 -4502 716 169 7 29 chr11 50980329 50980465 -99803088 - FLAM_C SINE Alu -7 136 4 2913 116 60 10 chr11 50980469 50980986 -99802567 + L1MCa LINE L1 1936 2478 -3948 6089 227 66 62 chr11 50981023 50981738 -99801815 + L1MCa LINE L1 2469 3179 -3247 2085 135 0 7 chr11 50981738 50982035 -99801518 + AluSx SINE Alu 1 295 -17 6089 227 66 62 chr11 50982035 50982264 -99801289 + L1MCa LINE L1 3179 3405 -3021 2190 122 0 13 chr11 50982264 50982567 -99800986 + AluSx SINE Alu 1 299 -13 6089 227 66 62 chr11 50982567 50982788 -99800765 + L1MCa LINE L1 3405 3624 -2802 1499 183 45 109 chr11 50982788 50983209 -99800344 - MSTD LTR MaLR -2 394 1 6089 227 66 62 chr11 50983209 50983318 -99800235 + L1MCa LINE L1 3624 3731 -2695 3468 114 6 10 chr11 50983318 50983834 -99799719 - MER75 DNA T2_type 0 514 1 6089 227 66 62 chr11 50983834 50984223 -99799330 + L1MCa LINE L1 3731 4117 -2309 552 66 0 0 chr11 50984223 50984299 -99799254 + Alu SINE Alu 235 310 -2 6089 227 66 62 chr11 50984299 50984356 -99799197 + L1MCa LINE L1 4117 4172 -2254 1992 115 32 0 chr11 50984356 50984679 -99798874 + AluSx SINE Alu 1 332 0 6089 227 66 62 chr11 50984679 50985037 -99798516 + L1MCa LINE L1 4172 4633 -1793 1407 170 9 0 chr11 50985042 50985272 -99798281 - AluJb SINE Alu -15 297 66 289 167 0 0 chr11 50985281 50985332 -99798221 + AluJ/FLAM SINE Alu 21 64 -238 563 184 21 84 chr11 50985352 50985447 -99798106 + L1MCa LINE L1 4642 4721 -1705 2207 108 3 19 chr11 50985447 50985754 -99797799 + AluSx SINE Alu 3 304 -8 563 184 21 84 chr11 50985754 50985848 -99797705 + L1MCa LINE L1 4721 4819 -1607 444 295 55 38 chr11 50986342 50986525 -99797028 + MER5A DNA MER1_type 4 189 0 343 275 58 92 chr11 50986745 50986865 -99796688 + MER91A DNA MER1_type 1 116 -80 2266 107 0 3 chr11 50986890 50987189 -99796364 + AluSx SINE Alu 1 298 -14 315 0 0 0 chr11 50987202 50987237 -99796316 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 200 174 0 0 chr11 50987238 50987251 -99796302 + (TA)n Simple_repeat Simple_repeat 1 13 -33 186 43 0 0 chr11 50987251 50987274 -99796279 + (CA)n Simple_repeat Simple_repeat 2 24 0 200 174 0 0 chr11 50987274 50987306 -99796247 + (TA)n Simple_repeat Simple_repeat 12 46 0 1565 163 16 77 chr11 50987308 50987621 -99795932 - AluJo SINE Alu -17 295 2 218 174 43 0 chr11 50987626 50987672 -99795881 + MER91A DNA MER1_type 143 190 0 1883 86 4 12 chr11 50987680 50987945 -99795608 + AluSp SINE Alu 57 313 0 224 365 119 55 chr11 50988110 50988403 -99795150 + L2 LINE L2 2961 3272 0 213 282 0 0 chr11 50988529 50988614 -99794939 + (TA)n Simple_repeat Simple_repeat 2 86 0 2465 96 3 0 chr11 50988680 50988992 -99794561 + AluSp SINE Alu 1 313 0 2057 148 0 0 chr11 50989360 50989665 -99793888 - AluSx SINE Alu -7 305 1 701 129 97 16 chr11 50989665 50989789 -99793764 - AluJo SINE Alu -177 135 2 1657 186 32 51 chr11 50989838 50989996 -99793557 + MLT1A1 LTR MaLR 1 160 -205 2403 106 0 3 chr11 50989996 50990307 -99793246 + AluSx SINE Alu 3 312 0 1657 186 32 51 chr11 50990307 50990520 -99793033 + MLT1A1 LTR MaLR 160 365 0 2221 116 3 0 chr11 50990850 50991151 -99792402 + AluSx SINE Alu 1 302 -10 1038 205 17 64 chr11 50992335 50992518 -99791035 - MER58A DNA MER1_type -2196 224 51 1887 149 0 27 chr11 50992518 50992843 -99790710 + AluJb SINE Alu 1 317 0 1038 205 17 64 chr11 50992843 50992891 -99790662 - MER58A DNA MER1_type -2369 51 2 312 304 19 62 chr11 50993009 50993030 -99790523 + MIR SINE MIR 40 60 -202 2137 116 3 0 chr11 50993030 50993315 -99790238 + AluJb SINE Alu 11 296 -16 312 304 19 62 chr11 50993315 50993454 -99790099 + MIR SINE MIR 60 193 -69 2371 93 0 13 chr11 50994122 50994424 -99789129 + AluSx SINE Alu 1 298 -14 227 337 10 20 chr11 50994538 50994639 -99788914 + MIR SINE MIR 11 110 -152 2305 70 27 3 chr11 50994977 50995276 -99788277 - AluY SINE Alu -5 306 1 2006 133 43 27 chr11 50995280 50995581 -99787972 - AluSx SINE Alu -5 307 2 904 164 0 0 chr11 50995663 50995803 -99787750 + FLAM_C SINE Alu 1 140 -3 283 321 183 0 chr11 50995967 50996098 -99787455 + MIR SINE MIR 1 155 -107 2253 117 0 13 chr11 50996236 50996545 -99787008 + AluSx SINE Alu 1 305 -7 2047 96 14 38 chr11 50996671 50996992 -99786561 + AluSx SINE Alu 1 314 0 1288 99 0 0 chr11 50996994 50997156 -99786397 + AluSg/x SINE Alu 135 296 -16 252 151 123 14 chr11 50997160 50997233 -99786320 - L1ME LINE L1 -252 5869 5789 2295 130 3 0 chr11 50997441 50997748 -99785805 + AluSx SINE Alu 1 308 -4 326 313 99 23 chr11 50997881 50998014 -99785539 - MIR SINE MIR -63 145 20 485 211 0 0 chr11 50998034 50998129 -99785424 + MER5A DNA MER1_type 15 109 -80 202 294 39 0 chr11 50998502 50998553 -99785000 + MIR SINE MIR 51 103 -105 188 358 0 45 chr11 50998831 50998898 -99784655 + L3 LINE CR1 1513 1576 -1 976 118 0 6 chr11 50999013 50999182 -99784371 + L1MA7 LINE L1 6124 6291 0 2131 113 4 0 chr11 50999188 50999462 -99784091 + AluSx SINE Alu 1 275 -37 212 0 36 0 chr11 50999470 50999498 -99784055 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 186 43 0 0 chr11 50999497 50999520 -99784033 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 312 302 131 37 chr11 50999527 50999772 -99783781 - L2 LINE L2 -201 3071 2804 2121 94 0 50 chr11 51000547 51000845 -99782708 + AluSq SINE Alu 7 289 -24 23 0 0 0 chr11 51000846 51000869 -99782684 + AT_rich Low_complexity Low_complexity 1 23 0 1946 106 0 28 chr11 51001146 51001428 -99782125 - AluSx SINE Alu -1 311 38 2107 93 61 0 chr11 51001475 51001754 -99781799 - AluSp SINE Alu -17 296 1 618 279 22 33 chr11 51001756 51001939 -99781614 + MIR SINE MIR 77 257 -5 1959 160 127 24 chr11 51002008 51002102 -99781451 + L1MCa LINE L1 20 103 -6323 9993 65 11 81 chr11 51002102 51003584 -99779969 + SVA Other Other 9 1386 0 1959 160 127 24 chr11 51003584 51003683 -99779870 + L1MCa LINE L1 103 190 -6236 2386 109 0 0 chr11 51003683 51003995 -99779558 + AluSp SINE Alu 1 312 -1 1959 160 127 24 chr11 51003995 51004226 -99779327 + L1MCa LINE L1 190 489 -5937 961 222 0 0 chr11 51004226 51004406 -99779147 - FRAM SINE Alu -1 175 1 1909 122 90 10 chr11 51004419 51004707 -99778846 - AluSx SINE Alu -1 311 1 3157 148 31 93 chr11 51004710 51005187 -99778366 + L1MCa LINE L1 484 989 -5437 2406 96 0 6 chr11 51005187 51005500 -99778053 + AluSx SINE Alu 1 311 -1 3157 148 31 93 chr11 51005500 51005643 -99777910 + L1MCa LINE L1 989 1139 -5287 638 192 92 0 chr11 51005643 51005763 -99777790 + FLAM_C SINE Alu 3 133 0 3157 148 31 93 chr11 51005763 51005878 -99777675 + L1MCa LINE L1 1139 1175 -5251 1990 129 11 4 chr11 51005878 51006157 -99777396 + AluSq SINE Alu 1 281 -32 3157 148 31 93 chr11 51006157 51006170 -99777383 + L1MCa LINE L1 1175 1187 -5239 309 118 0 0 chr11 51006170 51006221 -99777332 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 391 91 0 148 chr11 51006221 51006256 -99777297 + L1MCa LINE L1 1590 1606 -4820 2133 91 13 23 chr11 51006256 51006564 -99776989 - AluY SINE Alu -6 305 1 391 91 0 148 chr11 51006564 51006616 -99776937 + L1MCa LINE L1 1606 1664 -4762 4532 110 36 17 chr11 51006639 51007410 -99776143 + SVA Other Other 3 788 -598 2107 119 4 0 chr11 51007599 51007876 -99775677 - AluSp SINE Alu -35 278 1 29 0 0 0 chr11 51008169 51008198 -99775355 + AT_rich Low_complexity Low_complexity 1 29 0 803 128 0 0 chr11 51008235 51008344 -99775209 - AluJb SINE Alu -203 109 1 287 277 89 36 chr11 51008378 51008490 -99775063 + MIR SINE MIR 12 129 -133 315 256 346 6 chr11 51008546 51008702 -99774851 - MIR SINE MIR -39 223 15 841 258 36 44 chr11 51008792 51009044 -99774509 + MIR SINE MIR 13 262 0 1813 133 27 23 chr11 51009170 51009470 -99774083 + AluSg SINE Alu 1 301 -9 595 209 87 12 chr11 51009637 51009809 -99773744 - HsTC2 DNA Tc2 -2 1896 1712 952 274 42 10 chr11 51009810 51010117 -99773436 - HsTC2 DNA Tc2 -1579 319 3 2099 145 0 0 chr11 51010208 51010511 -99773042 - AluSx SINE Alu -8 304 2 800 234 44 25 chr11 51010555 51010945 -99772608 - MLT1J1 LTR MaLR 0 446 5 568 288 56 6 chr11 51010966 51011126 -99772427 - MIR SINE MIR -38 224 57 383 284 34 67 chr11 51011486 51011594 -99771959 + L1MC5 LINE L1 7499 7609 -352 1793 173 3 0 chr11 51011594 51011877 -99771676 + AluJb SINE Alu 5 288 -24 383 284 34 67 chr11 51011877 51012036 -99771517 + L1MC5 LINE L1 7609 7757 -204 1901 143 0 4 chr11 51012073 51012339 -99771214 - AluSx SINE Alu -47 265 1 750 155 0 9 chr11 51012367 51012483 -99771070 - FLAM_C SINE Alu -17 116 2 289 184 18 149 chr11 51012568 51012682 -99770871 + L2 LINE L2 3126 3224 -89 1093 164 0 0 chr11 51012686 51012851 -99770702 - AluJo/FRAM SINE Alu -14 298 134 1687 153 45 65 chr11 51012851 51013020 -99770533 - AluSx SINE Alu -10 302 131 2390 72 3 0 chr11 51013020 51013312 -99770241 - AluY SINE Alu -16 295 3 2464 65 0 16 chr11 51013318 51013626 -99769927 - AluY SINE Alu -8 303 1 1687 153 45 65 chr11 51013626 51013757 -99769796 - AluSx SINE Alu -186 126 1 216 309 29 15 chr11 51013757 51013825 -99769728 + L2 LINE L2 3177 3245 -27 1755 166 0 44 chr11 51014285 51014580 -99768973 - AluJo SINE Alu -30 282 1 2306 113 3 0 chr11 51014621 51014930 -99768623 - AluSx SINE Alu -2 310 1 416 265 237 9 chr11 51014957 51015114 -99768439 - L1ME4a LINE L1 -5 6116 5996 2103 133 6 19 chr11 51015114 51015431 -99768122 - AluSp SINE Alu 0 313 1 416 265 237 9 chr11 51015431 51015492 -99768061 - L1ME4a LINE L1 -125 5996 5848 1522 170 6 89 chr11 51015520 51015699 -99767854 - AluJo SINE Alu -15 297 155 2355 98 3 13 chr11 51015699 51016014 -99767539 + AluSp SINE Alu 1 312 -1 1522 170 6 89 chr11 51016014 51016158 -99767395 - AluJo SINE Alu -157 155 1 1991 155 0 23 chr11 51016164 51016473 -99767080 - AluJo SINE Alu -10 302 1 1881 169 3 0 chr11 51016477 51016772 -99766781 - AluJb SINE Alu -16 296 1 280 288 14 0 chr11 51016778 51016851 -99766702 - L1ME4a LINE L1 -524 5597 5524 180 274 82 41 chr11 51017483 51017556 -99765997 + MIR SINE MIR 20 95 -113 2248 102 3 3 chr11 51017639 51017933 -99765620 - AluSg SINE Alu -16 294 1 744 208 0 0 chr11 51018018 51018143 -99765410 - FLAM_A SINE Alu -7 126 2 317 219 0 0 chr11 51018173 51018237 -99765316 + MLT1K LTR MaLR 186 249 -339 2234 98 3 7 chr11 51018259 51018576 -99764977 - AluSq SINE Alu 0 316 1 2326 105 3 3 chr11 51018929 51019233 -99764320 - AluSx SINE Alu -8 304 1 1030 226 25 4 chr11 51019280 51019515 -99764038 - MSTA LTR MaLR 0 428 189 1333 68 12 0 chr11 51019516 51019679 -99763874 - AluSg/x SINE Alu -14 296 132 2351 102 7 0 chr11 51019679 51019974 -99763579 - AluSx SINE Alu -14 298 2 1085 129 21 10 chr11 51019975 51020169 -99763384 - MSTA LTR MaLR -232 196 1 3579 156 35 56 chr11 51020399 51020492 -99763061 - MER44D DNA MER2_type -1882 705 612 1996 134 27 17 chr11 51020492 51020790 -99762763 - AluJb SINE Alu -11 301 1 3579 156 35 56 chr11 51020790 51020953 -99762600 - MER44D DNA MER2_type -1975 612 447 2140 116 7 3 chr11 51020953 51021246 -99762307 - AluSx SINE Alu -18 294 1 3579 156 35 56 chr11 51021246 51021707 -99761846 - MER44D DNA MER2_type -2140 447 2 2299 120 0 0 chr11 51021799 51022108 -99761445 - AluSg SINE Alu -1 309 1 266 192 82 0 chr11 51022108 51022181 -99761372 + MIR3 SINE MIR 111 189 -19 1874 129 42 48 chr11 51022427 51022737 -99760816 + AluSx SINE Alu 5 312 0 2342 98 0 3 chr11 51022753 51023049 -99760504 + AluSq SINE Alu 1 295 -18 1881 166 0 25 chr11 51023337 51023657 -99759896 - AluJb SINE Alu 0 312 1 489 248 8 8 chr11 51023831 51023952 -99759601 + MIR3 SINE MIR 85 205 -3 1791 125 99 0 chr11 51024045 51024317 -99759236 + AluSx SINE Alu 5 303 -9 2587 61 0 6 chr11 51024319 51024632 -99758921 + AluY SINE Alu 1 311 0 449 274 46 13 chr11 51024888 51025041 -99758512 + MIR SINE MIR 81 238 -24 886 146 0 0 chr11 51025188 51025318 -99758235 + AluJo SINE Alu 5 134 -178 1688 189 3 17 chr11 51025324 51025621 -99757932 + AluJb SINE Alu 1 293 -19 23 33 0 0 chr11 51025621 51025651 -99757902 + AT_rich Low_complexity Low_complexity 1 30 0 260 254 90 60 chr11 51025687 51025821 -99757732 + MER5A DNA MER1_type 7 144 -45 548 242 134 6 chr11 51025880 51025936 -99757617 - MER5A DNA MER1_type -1 188 141 2177 94 17 0 chr11 51025936 51026224 -99757329 + AluSg SINE Alu 1 293 -17 548 242 134 6 chr11 51026224 51026324 -99757229 - MER5A DNA MER1_type -48 141 12 1844 157 54 0 chr11 51026332 51026626 -99756927 - AluSx SINE Alu -2 310 1 2156 82 24 10 chr11 51026637 51026930 -99756623 - AluY SINE Alu -12 299 3 281 281 85 65 chr11 51026952 51026971 -99756582 - MIR3 SINE MIR -36 172 155 1530 243 38 15 chr11 51026971 51027370 -99756183 + MLT1I LTR MaLR 1 408 -1 281 281 85 65 chr11 51027370 51027503 -99756050 - MIR3 SINE MIR -53 155 17 2251 93 14 0 chr11 51027589 51027879 -99755674 + AluSp SINE Alu 1 294 -19 2242 64 30 3 chr11 51027997 51028294 -99755259 - AluY SINE Alu -6 305 1 2208 109 0 34 chr11 51028302 51028624 -99754929 - AluSx SINE Alu -1 311 1 1961 128 17 7 chr11 51028961 51029249 -99754304 - AluSq SINE Alu -22 291 1 408 71 0 0 chr11 51029688 51029744 -99753809 + (CA)n Simple_repeat Simple_repeat 2 57 0 544 292 68 16 chr11 51030451 51030643 -99752910 + MIR SINE MIR 49 250 -12 1909 136 3 11 chr11 51030648 51030959 -99752594 - AluSx SINE Alu 0 309 1 1990 149 7 3 chr11 51030959 51031255 -99752298 - AluJb SINE Alu -15 297 1 850 208 0 7 chr11 51031261 51031415 -99752138 - FAM SINE Alu -15 170 18 2053 117 31 7 chr11 51031493 51031784 -99751769 + AluSx SINE Alu 1 298 -14 196 278 208 0 chr11 51031779 51031851 -99751702 + MER5A DNA MER1_type 61 147 -42 555 170 15 44 chr11 51031857 51031992 -99751561 - AluSg/x SINE Alu -7 303 173 1951 107 22 7 chr11 51032195 51032467 -99751086 - AluSg SINE Alu -20 290 15 385 324 43 86 chr11 51032784 51032994 -99750559 - L2 LINE L2 -52 3220 3020 2411 91 7 0 chr11 51033085 51033393 -99750160 - AluY SINE Alu -1 310 1 195 348 45 22 chr11 51033457 51033546 -99750007 - L2 LINE L2 -22 3250 3160 2385 88 7 0 chr11 51033941 51034238 -99749315 - AluSp SINE Alu -14 299 1 2307 101 6 19 chr11 51034415 51034731 -99748822 - AluSx SINE Alu 0 312 1 1509 177 78 0 chr11 51034733 51035015 -99748538 - AluJb SINE Alu -8 304 1 315 279 43 56 chr11 51035239 51035400 -99748153 + L2 LINE L2 2882 3040 -232 210 296 28 0 chr11 51035460 51035531 -99748022 + MIR SINE MIR 90 162 -100 32 91 0 0 chr11 51036228 51036316 -99747237 + GC_rich Low_complexity Low_complexity 1 88 0 21 0 0 0 chr11 51036547 51036568 -99746985 + GC_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr11 51036796 51036822 -99746731 + (CTG)n Simple_repeat Simple_repeat 3 28 0 205 217 29 29 chr11 51037259 51037328 -99746225 + (CGGGG)n Simple_repeat Simple_repeat 1 69 0 197 146 73 0 chr11 51037604 51037645 -99745908 - MIR SINE MIR -115 147 104 195 210 179 34 chr11 51038048 51038192 -99745361 + MIR SINE MIR 17 182 -63 25 51 0 0 chr11 51038427 51038466 -99745087 + AT_rich Low_complexity Low_complexity 1 39 0 43 0 0 0 chr11 51038474 51038517 -99745036 + AT_rich Low_complexity Low_complexity 1 43 0 341 317 49 24 chr11 51038802 51038966 -99744587 - MIR3 SINE MIR -3 205 38 283 266 16 55 chr11 51040267 51040352 -99743201 - MIR SINE MIR -28 234 147 2198 132 3 0 chr11 51040352 51040662 -99742891 - AluSx SINE Alu -1 311 1 2234 113 0 0 chr11 51040662 51040954 -99742599 - AluSc SINE Alu -17 292 1 1772 184 10 3 chr11 51040956 51041249 -99742304 - AluJo SINE Alu -17 295 1 283 266 16 55 chr11 51041249 51041287 -99742266 - MIR SINE MIR -115 147 112 2253 99 0 0 chr11 51041475 51041808 -99741745 - AluSx SINE Alu 0 333 1 525 213 46 0 chr11 51041814 51041922 -99741631 - FLAM_A SINE Alu -20 122 10 511 237 95 8 chr11 51042053 51042218 -99741335 + MIR SINE MIR 19 195 -63 2152 119 7 0 chr11 51042328 51042622 -99740931 - AluSx SINE Alu -16 296 1 1774 168 30 3 chr11 51042741 51043039 -99740514 + AluJb SINE Alu 1 306 -6 236 264 72 32 chr11 51043124 51043249 -99740304 - MER113 DNA MER1_type? -388 133 4 808 168 5 73 chr11 51044125 51044316 -99739237 - AluJb SINE Alu 0 312 135 605 301 47 45 chr11 51044320 51044681 -99738872 - L1MC/D LINE L1 -2006 5802 5443 2679 39 13 0 chr11 51044681 51044987 -99738566 - AluY SINE Alu -1 310 1 605 301 47 45 chr11 51044987 51045058 -99738495 - L1MC/D LINE L1 -2365 5443 5366 2332 99 0 34 chr11 51045058 51045382 -99738171 - AluSq SINE Alu 0 313 1 605 301 47 45 chr11 51045382 51045416 -99738137 - L1MC/D LINE L1 -2442 5366 5334 608 269 10 30 chr11 51045607 51045804 -99737749 + MIR SINE MIR 14 206 -56 457 129 0 0 chr11 51045901 51045971 -99737582 + Alu SINE Alu 234 303 -9 350 352 21 0 chr11 51045987 51046129 -99737424 + L1MC4a LINE L1 5816 5960 -1848 1807 130 42 0 chr11 51046229 51046490 -99737063 - AluSx SINE Alu -14 298 27 2242 82 27 7 chr11 51046490 51046782 -99736771 - AluY SINE Alu -10 301 2 318 50 0 0 chr11 51046784 51046824 -99736729 - AluSx SINE Alu -260 40 1 645 262 140 9 chr11 51047502 51047723 -99735830 + MIR SINE MIR 13 262 0 261 277 116 27 chr11 51047804 51047916 -99735637 - MIR SINE MIR -50 212 91 2295 98 0 3 chr11 51047978 51048273 -99735280 - AluSg SINE Alu -12 298 5 256 199 95 147 chr11 51048515 51048746 -99734807 - MER112 DNA MER1_type -41 219 1 2126 140 3 0 chr11 51049090 51049397 -99734156 - AluSx SINE Alu -4 308 1 1640 128 3 109 chr11 51049635 51049964 -99733589 - AluSg1 SINE Alu -15 294 1 272 186 69 29 chr11 51049983 51050085 -99733468 - L1ME4a LINE L1 -49 6072 5967 1651 137 27 62 chr11 51050176 51050507 -99733046 + AluSx SINE Alu 1 321 0 380 307 40 22 chr11 51050786 51051014 -99732539 - L1ME4a LINE L1 -247 5874 5643 297 241 348 0 chr11 51051030 51051142 -99732411 - MIR SINE MIR 0 262 112 2241 109 7 0 chr11 51051561 51051855 -99731698 + AluSp SINE Alu 1 296 -17 2592 56 0 7 chr11 51051855 51052160 -99731393 + AluY SINE Alu 1 303 -8 417 261 16 102 chr11 51052168 51052413 -99731140 + MIR SINE MIR 15 238 -24 863 206 42 11 chr11 51052865 51053054 -99730499 - MER20 DNA MER1_type 0 219 25 223 189 0 13 chr11 51053365 51053409 -99730144 + MIR SINE MIR 113 154 -108 935 191 25 5 chr11 51054038 51054242 -99729311 + L1MA4 LINE L1 6063 6270 -30 262 145 232 0 chr11 51054252 51054321 -99729232 - MIR SINE MIR -109 153 69 419 335 94 0 chr11 51054329 51054499 -99729054 + MIR SINE MIR 57 242 -20 229 156 44 0 chr11 51054846 51054891 -99728662 - MIR3 SINE MIR -11 197 151 356 283 13 46 chr11 51054911 51055063 -99728490 + MER117 DNA MER1_type 51 197 0 202 333 77 0 chr11 51055203 51055281 -99728272 - L3 LINE CR1 -113 1464 1381 453 230 69 81 chr11 51055330 51055504 -99728049 + MER5B DNA MER1_type 7 178 0 2055 106 0 7 chr11 51055660 51055944 -99727609 - AluSx SINE Alu -3 309 28 1888 154 0 16 chr11 51055953 51056258 -99727295 - AluJo SINE Alu -12 300 1 291 280 63 92 chr11 51056269 51056508 -99727045 + L2 LINE L2 2706 2937 -377 1980 158 10 10 chr11 51056795 51057106 -99726447 - AluSx SINE Alu -1 311 1 486 0 0 0 chr11 51057163 51057217 -99726336 + (TG)n Simple_repeat Simple_repeat 2 55 0 491 230 79 26 chr11 51057267 51057419 -99726134 + MIR SINE MIR 20 179 -83 * 826 281 35 22 chr11 51057395 51057626 -99725927 - MIR SINE MIR 0 262 29 2317 107 0 0 chr11 51057960 51058260 -99725293 - AluSx SINE Alu -12 300 1 21 0 0 0 chr11 51058698 51058719 -99724834 + AT_rich Low_complexity Low_complexity 1 21 0 436 325 103 29 chr11 51058945 51059296 -99724257 - L1ME4a LINE L1 -266 5855 5479 22 35 0 0 chr11 51059296 51059325 -99724228 + AT_rich Low_complexity Low_complexity 1 29 0 2137 127 7 0 chr11 51059328 51059619 -99723934 - AluSq SINE Alu -20 293 1 23 33 0 0 chr11 51059736 51059766 -99723787 + AT_rich Low_complexity Low_complexity 1 30 0 196 256 131 144 chr11 51060045 51060205 -99723348 + MIR SINE MIR 30 187 -75 2561 193 8 32 chr11 51060692 51060763 -99722790 - L1MB7 LINE L1 -5 6179 6108 2280 115 0 0 chr11 51060763 51061058 -99722495 + AluSx SINE Alu 1 295 -17 2561 193 8 32 chr11 51061058 51061521 -99722032 - L1MB7 LINE L1 -76 6108 5658 376 215 151 0 chr11 51061654 51061747 -99721806 - MIR SINE MIR -90 172 66 277 287 116 16 chr11 51061932 51062061 -99721492 + MIR3 SINE MIR 5 146 -62 216 235 0 0 chr11 51062096 51062164 -99721389 + GA-rich Low_complexity Low_complexity 1 68 0 2438 70 0 25 chr11 51062914 51063230 -99720323 - AluY SINE Alu -3 308 1 1859 138 71 0 chr11 51063235 51063518 -99720035 - AluSx SINE Alu -9 303 1 645 208 88 6 chr11 51063643 51063802 -99719751 - MIR3 SINE MIR -22 186 15 2292 71 7 0 chr11 51064077 51064377 -99719176 - AluSg1 SINE Alu 0 302 1 2334 115 0 0 chr11 51064379 51064684 -99718869 - AluSq SINE Alu -8 305 1 362 323 192 0 chr11 51064962 51065129 -99718424 + L1ME4a LINE L1 5730 5928 -193 2136 134 0 0 chr11 51065133 51065425 -99718128 + AluSx SINE Alu 1 292 -20 618 235 95 11 chr11 51065483 51065662 -99717891 + MIR SINE MIR 2 195 -67 182 341 24 47 chr11 51065814 51065899 -99717654 + L2 LINE L2 2865 2947 -325 194 176 118 39 chr11 51065972 51065990 -99717563 + L2 LINE L2 3214 3229 -43 2066 100 11 4 chr11 51065990 51066295 -99717258 - AluSx SINE Alu 0 307 1 194 176 118 39 chr11 51066295 51066326 -99717227 + L2 LINE L2 3229 3268 -4 2225 118 7 3 chr11 51066351 51066655 -99716898 - AluSx SINE Alu -7 305 1 225 0 0 0 chr11 51066655 51066680 -99716873 + (TTA)n Simple_repeat Simple_repeat 2 26 0 550 243 0 0 chr11 51066680 51066783 -99716770 - FLAM_A SINE Alu -24 118 16 255 275 22 44 chr11 51067142 51067233 -99716320 + MIR SINE MIR 19 107 -155 1733 166 16 39 chr11 51067476 51067783 -99715770 - AluJb SINE Alu -12 300 1 324 358 50 0 chr11 51068207 51068327 -99715226 - L2 LINE L2 -5 3267 3142 392 111 0 28 chr11 51068575 51068642 -99714911 - L1MB8 LINE L1 -5 6173 6108 2233 126 3 0 chr11 51068642 51068943 -99714610 + AluSx SINE Alu 1 302 -10 331 283 85 0 chr11 51070071 51070177 -99713376 + MER103 DNA DNA 8 122 -44 609 269 8 0 chr11 51070283 51070417 -99713136 - L2 LINE L2 0 3313 3179 369 269 96 39 chr11 51070416 51070513 -99713040 - MIR SINE MIR -6 256 166 * 207 0 0 0 chr11 51070513 51070536 -99713017 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 2029 91 3 24 chr11 51070536 51070823 -99712730 - AluSq SINE Alu -32 281 1 369 269 96 39 chr11 51070823 51070880 -99712673 - MIR SINE MIR -95 167 92 229 266 62 53 chr11 51071392 51071412 -99712141 - MIR3 SINE MIR -98 110 92 2043 104 90 10 chr11 51071412 51071701 -99711852 + AluSx SINE Alu 1 312 0 229 266 62 53 chr11 51071701 51071814 -99711739 - MIR3 SINE MIR -116 92 5 239 170 0 57 chr11 51072171 51072224 -99711329 - MIR SINE MIR -70 138 89 394 255 122 56 chr11 51072342 51072538 -99711015 + MIR SINE MIR 20 228 -34 241 286 32 40 chr11 51072609 51072735 -99710818 - MIR SINE MIR 0 262 138 760 177 28 14 chr11 51072737 51072878 -99710675 - FLAM_C SINE Alu 0 143 1 289 324 19 19 chr11 51072879 51072987 -99710566 - MIR SINE MIR -111 151 44 227 324 45 0 chr11 51073193 51073304 -99710249 + MIR SINE MIR 110 225 -37 314 255 47 20 chr11 51073851 51074000 -99709553 - L1ME4a LINE L1 -5 6116 5964 269 109 22 0 chr11 51074805 51074851 -99708702 + (TG)n Simple_repeat Simple_repeat 2 48 0 2298 79 0 4 chr11 51076909 51077189 -99706364 + AluSx SINE Alu 2 280 -32 346 19 0 38 chr11 51077193 51077246 -99706307 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 225 0 0 0 chr11 51077569 51077594 -99705959 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1020 220 52 13 chr11 51077734 51077966 -99705587 + MIR SINE MIR 18 258 -4 2443 84 3 0 chr11 51077983 51078280 -99705273 + AluSp SINE Alu 3 300 -13 364 245 98 28 chr11 51078296 51078439 -99705114 + MIR3 SINE MIR 4 156 -52 2201 113 0 0 chr11 51079300 51079614 -99703939 + AluSg SINE Alu 1 314 0 26 0 0 0 chr11 51079780 51079806 -99703747 + AT_rich Low_complexity Low_complexity 1 26 0 2156 142 0 0 chr11 51079975 51080284 -99703269 - AluSx SINE Alu -3 309 1 200 256 110 61 chr11 51080612 51080694 -99702859 + L2 LINE L2 3166 3251 -21 331 239 361 0 chr11 51081055 51081185 -99702368 - Charlie8 DNA MER1_type -2167 250 74 407 333 82 61 chr11 51081593 51082020 -99701533 + L2 LINE L2 2816 3251 -21 1702 122 122 4 chr11 51082269 51082532 -99701021 - AluSg1 SINE Alu -15 294 1 1101 100 0 12 chr11 51082532 51082692 -99700861 - L1PB1 LINE L1 -47 6104 5947 2396 78 7 10 chr11 51082781 51083090 -99700463 - AluY SINE Alu -3 308 1 2142 123 3 3 chr11 51083294 51083604 -99699949 + AluSx SINE Alu 3 312 0 359 297 23 0 chr11 51083847 51083975 -99699578 - Charlie8 DNA MER1_type -1927 490 360 251 304 80 8 chr11 51084083 51084208 -99699345 - Charlie8 DNA MER1_type -2235 182 49 2310 95 0 0 chr11 51084291 51084597 -99698956 + AluSq SINE Alu 2 307 -6 317 254 15 0 chr11 51084600 51084667 -99698886 - Charlie8 DNA MER1_type -2349 68 1 224 333 49 10 chr11 51085244 51085346 -99698207 + MIR SINE MIR 73 178 -84 787 244 63 111 chr11 51086051 51086287 -99697266 - MLT1J LTR MaLR -48 463 259 1694 98 0 4 chr11 51086287 51086553 -99697000 + AluSx SINE Alu 51 315 0 787 244 63 111 chr11 51086553 51086791 -99696762 - MLT1J LTR MaLR -252 259 11 23 0 0 0 chr11 51086945 51086968 -99696585 + AT_rich Low_complexity Low_complexity 1 23 0 302 270 139 8 chr11 51087045 51087226 -99696327 + MIR SINE MIR 10 211 -51 194 321 48 12 chr11 51087780 51087864 -99695689 + MIR SINE MIR 164 250 -12 2202 95 3 19 chr11 51088249 51088564 -99694989 + AluSp SINE Alu 1 310 -3 454 268 90 61 chr11 51088579 51088713 -99694840 - L2 LINE L2 -19 3294 3165 942 128 0 15 chr11 51088713 51088846 -99694707 + FLAM_C SINE Alu 1 131 -2 454 268 90 61 chr11 51088846 51089066 -99694487 - L2 LINE L2 -148 3165 2849 352 282 161 7 chr11 51089077 51089226 -99694327 - L2 LINE L2 -962 2352 2181 221 224 40 40 chr11 51089379 51089455 -99694098 - L2 LINE L2 -2597 717 642 884 241 96 0 chr11 51090340 51090560 -99692993 - MIR SINE MIR -14 248 8 512 288 121 5 chr11 51090629 51090827 -99692726 - MIR SINE MIR -22 240 20 339 130 0 0 chr11 51091285 51091339 -99692214 + (T)n Simple_repeat Simple_repeat 1 54 0 22 0 0 0 chr11 51092285 51092307 -99691246 + AT_rich Low_complexity Low_complexity 1 22 0 225 280 11 32 chr11 51093135 51093228 -99690325 - MER103 DNA DNA -54 112 22 2262 93 0 3 chr11 51093303 51093604 -99689949 + AluSq SINE Alu 1 300 -13 331 331 92 66 chr11 51093676 51094023 -99689530 + L2 LINE L2 2914 3269 -3 2057 108 0 7 chr11 51094270 51094558 -99688995 - AluSc SINE Alu -17 292 7 1569 157 73 3 chr11 51094595 51094882 -99688671 + AluJb SINE Alu 1 307 -5 384 211 22 22 chr11 51094882 51094972 -99688581 - MIR SINE MIR -93 169 80 369 289 158 13 chr11 51095132 51095284 -99688269 + MIR SINE MIR 6 179 -83 1855 113 88 0 chr11 51095515 51095799 -99687754 + AluSq SINE Alu 1 309 -4 573 223 218 31 chr11 51096896 51097089 -99686464 + MIR SINE MIR 9 237 -25 202 291 76 0 chr11 51097111 51097190 -99686363 + L2 LINE L2 3179 3263 -50 1600 238 132 37 chr11 51097217 51097368 -99686185 - L2 LINE L2 -22 3291 3156 2243 83 3 16 chr11 51097368 51097680 -99685873 + AluSx SINE Alu 1 308 -4 1600 238 132 37 chr11 51097680 51098278 -99685275 - L2 LINE L2 -157 3156 2454 1431 147 66 33 chr11 51098278 51098551 -99685002 + AluJo SINE Alu 1 282 -30 1392 127 0 18 chr11 51098579 51098800 -99684753 + AluSx SINE Alu 1 217 -95 1485 72 5 0 chr11 51098908 51099103 -99684450 + AluYa5 SINE Alu 106 301 -10 2102 118 0 0 chr11 51099618 51099939 -99683614 + AluSx SINE Alu 3 312 0 305 259 153 0 chr11 51099961 51100046 -99683507 + L2 LINE L2 3203 3300 -13 180 0 0 0 chr11 51100046 51100066 -99683487 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 243 0 0 0 chr11 51100489 51100516 -99683037 + (TG)n Simple_repeat Simple_repeat 2 28 0 1952 100 0 57 chr11 51101170 51101491 -99682062 - AluSx SINE Alu 0 304 1 2234 104 3 0 chr11 51101575 51101884 -99681669 - AluSp SINE Alu -3 310 1 348 329 79 12 chr11 51102245 51102409 -99681144 - MIR SINE MIR -16 246 72 243 200 77 31 chr11 51102409 51102474 -99681079 - tRNA-Gln-CAG tRNA tRNA -2 73 6 906 163 43 22 chr11 51102555 51102739 -99680814 + AluJo SINE Alu 119 306 -6 2046 99 0 0 chr11 51103124 51103455 -99680098 - AluSx SINE Alu 0 331 1 234 341 16 24 chr11 51104763 51104843 -99678710 - L2 LINE L2 -7 3265 3185 2412 108 37 3 chr11 51104843 51105195 -99678358 + THE1B LTR MaLR 1 364 0 234 341 16 24 chr11 51105195 51105237 -99678316 - L2 LINE L2 -87 3185 3144 434 297 17 11 chr11 51105316 51105491 -99678062 + MIR SINE MIR 56 231 -31 309 259 75 109 chr11 51105662 51105836 -99677717 - MIR SINE MIR -69 193 26 336 102 0 0 chr11 51105869 51105918 -99677635 + (TG)n Simple_repeat Simple_repeat 1 49 0 1964 124 7 0 chr11 51106191 51106489 -99677064 - AluSq SINE Alu -13 300 1 2046 118 34 0 chr11 51107000 51107297 -99676256 - AluSq SINE Alu -2 311 5 250 296 98 30 chr11 51107533 51107665 -99675888 + L2 LINE L2 3171 3311 -2 1671 159 43 0 chr11 51108036 51108312 -99675241 - AluJo SINE Alu -24 288 1 309 68 0 0 chr11 51109142 51109186 -99674367 + (TG)n Simple_repeat Simple_repeat 1 44 0 252 100 0 0 chr11 51109186 51109226 -99674327 + (GA)n Simple_repeat Simple_repeat 2 41 0 823 156 19 31 chr11 51109609 51109769 -99673784 - FRAM SINE Alu -8 168 11 331 273 34 0 chr11 51111216 51111304 -99672249 + L2 LINE L2 3181 3271 -1 207 283 138 46 chr11 51111586 51111738 -99671815 - MIR3 SINE MIR -28 180 15 1634 162 0 26 chr11 51112451 51112753 -99670800 - AluJb SINE Alu -18 294 1 217 329 132 0 chr11 51112756 51112832 -99670721 - MIR SINE MIR -66 196 111 330 328 88 0 chr11 51112858 51112983 -99670570 - L2 LINE L2 0 3272 3137 277 250 250 0 chr11 51113132 51113264 -99670289 - MIR SINE MIR -90 172 8 429 54 0 0 chr11 51113279 51113335 -99670218 + (TA)n Simple_repeat Simple_repeat 2 57 0 2151 104 7 0 chr11 51113335 51113632 -99669921 - AluSx SINE Alu -13 299 1 1467 124 4 9 chr11 51113915 51114141 -99669412 - AluJb SINE Alu -7 305 81 2153 113 0 0 chr11 51114928 51115237 -99668316 + AluSx SINE Alu 1 309 -3 344 327 55 24 chr11 51115245 51115410 -99668143 - MIR SINE MIR -49 213 44 1249 132 18 36 chr11 51115511 51115730 -99667823 - MER20 DNA MER1_type -4 215 1 2051 100 52 0 chr11 51115811 51115931 -99667622 + AluSq SINE Alu 1 113 -200 468 0 0 0 chr11 51115931 51115983 -99667570 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 2051 100 52 0 chr11 51115983 51116153 -99667400 + AluSq SINE Alu 113 306 -7 1523 134 49 0 chr11 51116662 51116909 -99666644 - L1MC1 LINE L1 -5 6328 6070 1946 123 7 0 chr11 51117499 51117792 -99665761 - AluSx SINE Alu 0 312 18 304 289 10 10 chr11 51117997 51118094 -99665459 - MIR SINE MIR 0 262 166 236 258 32 0 chr11 51118125 51118187 -99665366 + MIR SINE MIR 91 154 -108 451 255 104 65 chr11 51118202 51118433 -99665120 + MIR SINE MIR 22 261 -1 189 246 108 0 chr11 51118476 51118541 -99665012 + L2 LINE L2 3199 3270 -43 287 255 75 0 chr11 51119368 51119474 -99664079 - Charlie8 DNA MER1_type -2161 256 143 311 284 45 11 chr11 51119514 51119602 -99663951 + L1MC4 LINE L1 6612 6702 -1340 289 88 62 0 chr11 51119710 51119790 -99663763 + (TA)n Simple_repeat Simple_repeat 1 85 0 311 213 43 53 chr11 51119796 51119890 -99663663 + L1MC4 LINE L1 6612 6704 -1338 41 0 0 0 chr11 51119890 51119931 -99663622 + AT_rich Low_complexity Low_complexity 1 41 0 206 85 68 0 chr11 51119960 51120019 -99663534 + (TA)n Simple_repeat Simple_repeat 1 63 0 2018 119 0 0 chr11 51120019 51120304 -99663249 - AluSg SINE Alu -25 285 1 344 214 114 46 chr11 51120306 51120357 -99663196 - Charlie8 DNA MER1_type -200 141 95 2207 98 0 3 chr11 51120357 51120662 -99662891 - AluSq SINE Alu -9 304 1 344 214 114 46 chr11 51120662 51120741 -99662812 - Charlie8 DNA MER1_type -246 95 2 277 211 39 0 chr11 51120919 51120971 -99662582 - MIR SINE MIR -62 146 93 302 256 68 152 chr11 51121126 51121331 -99662222 + MIR SINE MIR 22 204 -58 1840 173 0 3 chr11 51121331 51121637 -99661916 + AluJb SINE Alu 1 305 -7 302 256 68 152 chr11 51121637 51121681 -99661872 + MIR SINE MIR 204 250 -12 511 255 118 34 chr11 51122711 51122915 -99660638 + MIR SINE MIR 41 261 -1 828 242 9 50 chr11 51122970 51123099 -99660454 - MIR SINE MIR -14 248 129 1960 113 3 7 chr11 51123099 51123403 -99660150 + AluSq SINE Alu 1 303 0 828 242 9 50 chr11 51123403 51123491 -99660062 - MIR SINE MIR -133 129 39 294 246 95 24 chr11 51123459 51123585 -99659968 + MIR SINE MIR 20 154 -108 * 280 288 0 0 chr11 51124265 51124338 -99659215 + L2 LINE L2 2392 2464 -850 1022 73 7 0 chr11 51124341 51124477 -99659076 - AluSg/x SINE Alu -12 300 164 1043 111 0 0 chr11 51124661 51124805 -99658748 + AluSg SINE Alu 1 144 -166 824 106 0 32 chr11 51124817 51124940 -99658613 - AluSp SINE Alu -194 119 1 2070 96 10 26 chr11 51124949 51125262 -99658291 - AluSp SINE Alu -5 308 1 2053 109 0 32 chr11 51125263 51125575 -99657978 - AluSg SINE Alu -8 302 1 39 22 0 0 chr11 51125587 51125633 -99657920 + AT_rich Low_complexity Low_complexity 1 46 0 821 248 79 0 chr11 51125695 51125909 -99657644 - MIR SINE MIR -1 261 31 1993 114 0 0 chr11 51126163 51126487 -99657066 - AluSg SINE Alu 0 324 1 918 135 88 6 chr11 51126716 51126886 -99656667 - AluSq SINE Alu -7 306 123 362 287 11 0 chr11 51126962 51127049 -99656504 + MIR3 SINE MIR 114 201 -7 2436 43 0 3 chr11 51127066 51127366 -99656187 - AluY SINE Alu -12 299 1 385 115 0 115 chr11 51127900 51127972 -99655581 - MER3 DNA MER1_type 0 209 147 2022 138 0 0 chr11 51127972 51128269 -99655284 + AluSx SINE Alu 1 297 -15 1869 131 7 0 chr11 51128284 51128566 -99654987 + AluSx SINE Alu 3 286 -26 294 214 0 0 chr11 51128566 51128644 -99654909 - MER3 DNA MER1_type -3 159 79 936 149 13 0 chr11 51128682 51128836 -99654717 - FRAM SINE Alu -24 152 1 24 0 0 0 chr11 51128836 51128860 -99654693 + AT_rich Low_complexity Low_complexity 1 24 0 211 105 35 18 chr11 51128866 51128923 -99654630 + (TTATA)n Simple_repeat Simple_repeat 5 62 0 306 165 127 25 chr11 51128923 51129002 -99654551 + L1MCa LINE L1 1978 2064 -4362 216 24 73 0 chr11 51129005 51129046 -99654507 + (TA)n Simple_repeat Simple_repeat 1 44 0 732 129 8 24 chr11 51129046 51129170 -99654383 - FLAM_A SINE Alu -11 122 1 2175 70 0 14 chr11 51129176 51129485 -99654068 - AluY SINE Alu 0 305 1 351 309 32 8 chr11 51129626 51129752 -99653801 - MIR SINE MIR -11 251 123 2106 112 10 10 chr11 51130392 51130704 -99652849 - AluSx SINE Alu 0 312 1 1164 91 17 0 chr11 51130704 51130879 -99652674 - AluSc SINE Alu 0 309 132 1676 165 10 7 chr11 51131060 51131351 -99652202 - AluJo SINE Alu 0 312 21 353 251 68 84 chr11 51131366 51131557 -99651996 + L2 LINE L2 3117 3304 -9 833 241 115 18 chr11 51131703 51131989 -99651564 + L1MC4a LINE L1 5688 6001 -1807 2188 81 0 0 chr11 51131996 51132310 -99651243 + AluSg SINE Alu 1 314 0 765 186 0 0 chr11 51132324 51132453 -99651100 + FLAM_C SINE Alu 9 137 -6 1660 91 18 94 chr11 51132522 51132756 -99650797 + L1MA5A LINE L1 5992 6242 -55 1753 143 0 0 chr11 51132756 51133052 -99650501 - AluSx SINE Alu 0 312 21 1660 91 18 94 chr11 51133052 51133072 -99650481 + L1MA5A LINE L1 6242 6262 -35 1668 132 8 12 chr11 51133072 51133315 -99650238 - AluJb SINE Alu -70 242 1 1660 91 18 94 chr11 51133315 51133388 -99650165 + L1MA5A LINE L1 6262 6295 -2 2264 100 0 3 chr11 51133488 51133778 -99649775 - AluSc SINE Alu -20 289 1 24 0 0 0 chr11 51133787 51133811 -99649742 + AT_rich Low_complexity Low_complexity 1 24 0 2241 116 13 0 chr11 51134256 51134557 -99648996 + AluSx SINE Alu 1 305 -7 661 242 134 0 chr11 51134735 51134892 -99648661 + MER45A DNA AcHobo 1 178 0 2251 127 10 0 chr11 51134983 51135291 -99648262 - AluSx SINE Alu 0 312 2 288 53 0 0 chr11 51135354 51135392 -99648161 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 258 32 0 0 chr11 51135405 51135436 -99648117 + (TC)n Simple_repeat Simple_repeat 2 32 0 853 143 0 8 chr11 51135437 51135563 -99647990 - FRAM SINE Alu -51 125 1 1714 158 0 25 chr11 51135663 51135941 -99647612 + AluJb SINE Alu 3 273 -39 1162 169 16 0 chr11 51136233 51136258 -99647295 + AluJo SINE Alu 105 128 -184 2119 120 10 0 chr11 51136258 51136550 -99647003 + AluSx SINE Alu 1 295 -17 1162 169 16 0 chr11 51136550 51136707 -99646846 + AluJo SINE Alu 128 290 -22 240 35 0 0 chr11 51136707 51136715 -99646838 + (TG)n Simple_repeat Simple_repeat 1 37 0 240 35 0 0 chr11 51136715 51136744 -99646809 + (TG)n Simple_repeat Simple_repeat 2 30 0 859 139 0 69 chr11 51136894 51137038 -99646515 - AluJo SINE Alu -178 134 1 414 261 55 102 chr11 51137076 51137389 -99646164 - L2 LINE L2 -120 3193 2903 2374 92 0 0 chr11 51137389 51137681 -99645872 + AluSg SINE Alu 1 292 -18 414 261 55 102 chr11 51137681 51137874 -99645679 - L2 LINE L2 -410 2903 2703 481 288 76 87 chr11 51138147 51138275 -99645278 - L2 LINE L2 -668 2646 2518 2427 66 10 0 chr11 51138275 51138580 -99644973 - AluY SINE Alu -3 308 1 481 288 76 87 chr11 51138580 51138751 -99644802 - L2 LINE L2 -796 2518 2349 1620 190 0 0 chr11 51138751 51139009 -99644544 - AluJo SINE Alu -17 295 38 481 288 76 87 chr11 51139009 51139052 -99644501 - L2 LINE L2 -965 2349 2307 417 280 113 7 chr11 51139484 51139634 -99643919 - MIR SINE MIR -50 212 47 2238 118 10 0 chr11 51139634 51139940 -99643613 + AluSx SINE Alu 1 309 -3 309 230 230 32 chr11 51140127 51140253 -99643300 - MIR3 SINE MIR -25 183 33 385 272 0 0 chr11 51140522 51140603 -99642950 + MLT1K LTR MaLR 117 197 -391 1738 182 3 7 chr11 51140818 51141115 -99642438 + AluSx SINE Alu 1 296 -16 253 342 60 19 chr11 51141212 51141389 -99642164 - MIR3 SINE MIR 0 208 19 2422 58 4 0 chr11 51141416 51141694 -99641859 - AluSx SINE Alu -21 291 13 484 214 122 6 chr11 51142098 51142255 -99641298 + MIR SINE MIR 3 177 -62 210 147 0 0 chr11 51142645 51142679 -99640874 + MIR SINE MIR 85 118 -90 1451 257 89 7 chr11 51142679 51143127 -99640426 - LTR33 LTR ERVL 0 521 37 2212 114 0 0 chr11 51143878 51144201 -99639352 + AluSx SINE Alu 1 323 0 684 198 68 57 chr11 51144203 51144380 -99639173 + MIR SINE MIR 25 203 -59 1772 170 38 0 chr11 51144790 51145078 -99638475 - AluJb SINE Alu -13 299 1 205 208 56 0 chr11 51145225 51145297 -99638256 + (TTTA)n Simple_repeat Simple_repeat 3 78 0 347 253 43 2 chr11 51145340 51145460 -99638093 - MIR SINE MIR -59 149 52 1967 91 0 4 chr11 51145661 51145938 -99637615 - AluSx SINE Alu 0 312 40 875 140 0 37 chr11 51146041 51146177 -99637376 + FLAM_C SINE Alu 1 131 -2 429 20 0 0 chr11 51146537 51146587 -99636966 + (CA)n Simple_repeat Simple_repeat 1 50 0 2105 121 0 7 chr11 51146609 51146898 -99636655 - AluSx SINE Alu -25 287 1 337 309 123 17 chr11 51147034 51147270 -99636283 - MLT1K LTR MaLR -158 430 170 2586 49 0 10 chr11 51147466 51147774 -99635779 - AluY SINE Alu -5 306 2 1961 121 14 21 chr11 51148059 51148349 -99635204 + AluSx SINE Alu 1 288 -24 2137 107 3 0 chr11 51198468 51198766 -99584787 - AluSx SINE Alu -13 299 1 2253 67 20 7 chr11 51198813 51199112 -99584441 - AluY SINE Alu -8 303 1 2070 104 7 3 chr11 51199591 51199888 -99583665 + AluSx SINE Alu 5 302 -10 314 143 20 0 chr11 51200642 51200691 -99582862 - MSTB2 LTR MaLR 0 457 408 984 97 0 0 chr11 51200691 51200835 -99582718 - AluY SINE Alu -18 293 150 2260 92 0 16 chr11 51201442 51201759 -99581794 + AluSq SINE Alu 1 312 -1 398 77 12 73 chr11 51202238 51202315 -99581238 - MLT1B LTR MaLR -328 62 1 988 240 45 28 chr11 51202537 51202825 -99580728 - MLT1J LTR MaLR -218 293 1 426 295 111 63 chr11 51203577 51203848 -99579705 - L1ME4a LINE L1 -53 6068 5785 637 222 185 16 chr11 51203850 51204039 -99579514 + MER58A DNA MER1_type 4 224 0 924 246 24 0 chr11 51204051 51204262 -99579291 + Charlie1 DNA MER1_type 5 220 -2541 589 188 7 49 chr11 51204260 51204404 -99579149 + Charlie1 DNA MER1_type 2623 2760 -1 * 22 35 0 0 chr11 51204457 51204486 -99579067 + AT_rich Low_complexity Low_complexity 1 29 0 2164 99 30 0 chr11 51204604 51204906 -99578647 + AluSx SINE Alu 1 311 -1 4965 215 37 24 chr11 51204966 51206933 -99576620 + L1M3e LINE L1 2017 3966 -3599 3279 187 87 22 chr11 51207038 51207488 -99576065 + L1M3e LINE L1 4479 4898 -2667 1495 179 4 11 chr11 51207488 51207762 -99575791 - AluJo SINE Alu -30 282 11 3279 187 87 22 chr11 51207762 51208130 -99575423 + L1M3e LINE L1 4898 5350 -2215 1276 103 6 0 chr11 51208256 51208431 -99575122 + AluSg/x SINE Alu 131 306 -4 265 270 0 0 chr11 51208442 51208505 -99575048 + MIR SINE MIR 156 218 -44 2075 114 0 16 chr11 51208784 51209090 -99574463 - AluSx SINE Alu -11 301 1 349 342 25 8 chr11 51209370 51209490 -99574063 - MIR3 SINE MIR -73 135 14 287 304 72 40 chr11 51209553 51209678 -99573875 - MIR3 SINE MIR -77 131 3 1839 88 0 48 chr11 51209817 51210089 -99573464 - AluSq SINE Alu -19 294 36 23 0 0 0 chr11 51210357 51210380 -99573173 + AT_rich Low_complexity Low_complexity 1 23 0 202 288 15 0 chr11 51211614 51211680 -99571873 + GA-rich Low_complexity Low_complexity 4 70 0 226 340 39 10 chr11 51211905 51212008 -99571545 - MIR SINE MIR -125 137 32 213 258 15 45 chr11 51212149 51212215 -99571338 - MIR3 SINE MIR -7 201 138 307 283 38 19 chr11 51212290 51212396 -99571157 + MIR SINE MIR 45 152 -56 229 247 52 52 chr11 51213635 51213712 -99569841 - MIR SINE MIR -78 184 108 286 295 26 0 chr11 51213714 51213792 -99569761 - MLT1K LTR MaLR -7 581 502 356 307 96 6 chr11 51215362 51215528 -99568025 + MER91A DNA MER1_type 16 196 0 1295 249 28 22 chr11 51215708 51216070 -99567483 - MLT1A1 LTR MaLR -1 364 1 426 53 0 0 chr11 51216070 51216127 -99567426 + (CA)n Simple_repeat Simple_repeat 2 58 0 348 208 139 46 chr11 51216160 51216333 -99567220 - LTR33 LTR ERVL -69 452 264 207 243 153 72 chr11 51216590 51216701 -99566852 - MIR SINE MIR -67 141 22 480 324 62 5 chr11 51217433 51217643 -99565910 - MIR SINE MIR -24 238 17 491 233 53 8 chr11 51217981 51218114 -99565439 - MIR SINE MIR -92 170 32 474 181 0 146 chr11 51218249 51218393 -99565160 - MLT1J LTR MaLR -2 509 387 298 278 103 41 chr11 51218407 51218499 -99565054 - LTR67 LTR ERVL -16 541 456 2139 146 39 21 chr11 51218499 51218882 -99564671 - MLT1B LTR MaLR 0 390 1 298 278 103 41 chr11 51218882 51218983 -99564570 - LTR67 LTR ERVL -101 456 336 1006 257 28 24 chr11 51219098 51219386 -99564167 - MLT1J LTR MaLR -218 293 5 1025 117 11 22 chr11 51219546 51219725 -99563828 - AluSq SINE Alu -136 177 1 1228 186 51 83 chr11 51219996 51220346 -99563207 + MER58B DNA MER1_type 1 339 -2 1537 79 65 0 chr11 51220422 51220638 -99562915 + MER30 DNA MER1_type 1 230 0 213 65 0 0 chr11 51220782 51220813 -99562740 + (TG)n Simple_repeat Simple_repeat 1 31 0 329 323 92 23 chr11 51221481 51221611 -99561942 - MIR3 SINE MIR -28 180 42 501 321 76 18 chr11 51221637 51221861 -99561692 - MIR SINE MIR -14 248 12 249 343 139 29 chr11 51222065 51222310 -99561243 + L2 LINE L2 3001 3272 0 692 272 16 11 chr11 51222333 51222517 -99561036 - MER5A DNA MER1_type 0 189 5 234 360 36 0 chr11 51223025 51223136 -99560417 + MIR SINE MIR 35 149 -59 395 291 43 7 chr11 51223297 51223438 -99560115 + L2 LINE L2 3155 3300 -13 1043 179 0 60 chr11 51223597 51223832 -99559721 - AluJo SINE Alu -7 305 85 471 252 136 0 chr11 51223832 51223979 -99559574 - AluJo SINE Alu -62 250 84 267 173 0 80 chr11 51223986 51224061 -99559492 - FLAM_A SINE Alu -4 129 61 299 188 58 14 chr11 51224178 51224247 -99559306 + MIR SINE MIR 104 175 -87 2166 88 3 14 chr11 51224510 51224806 -99558747 + AluSq SINE Alu 1 293 -20 900 195 24 34 chr11 51224929 51225134 -99558419 + L2 LINE L2 3111 3313 0 656 152 30 110 chr11 51225181 51225345 -99558208 + Charlie1 DNA MER1_type 5 155 -2606 475 129 11 65 chr11 51225314 51225389 -99558164 + Charlie1 DNA MER1_type 2094 2165 -596 * 2631 109 14 93 chr11 51225389 51225523 -99558030 - MER101 LTR ERV1 0 474 331 1874 103 3 52 chr11 51225523 51225833 -99557720 - AluSx SINE Alu 0 312 18 2631 109 14 93 chr11 51225833 51226213 -99557340 - MER101 LTR ERV1 -143 331 1 475 129 11 65 chr11 51226213 51226230 -99557323 + Charlie1 DNA MER1_type 2165 2181 -580 1777 181 177 40 chr11 51226281 51226693 -99556860 + Charlie1 DNA MER1_type 2159 2661 -100 2104 94 0 24 chr11 51226693 51226991 -99556562 - AluSq SINE Alu -2 311 21 1777 181 177 40 chr11 51226991 51227108 -99556445 + Charlie1 DNA MER1_type 2661 2761 0 21 0 0 0 chr11 51227531 51227552 -99556001 + AT_rich Low_complexity Low_complexity 1 21 0 2137 80 21 0 chr11 51227552 51227838 -99555715 - AluSx SINE Alu -20 292 1 191 255 0 0 chr11 51227862 51227909 -99555644 - MIR SINE MIR -58 150 104 211 231 0 39 chr11 51228304 51228356 -99555197 + MIR SINE MIR 168 217 -45 186 43 0 0 chr11 51228364 51228387 -99555166 + (TAA)n Simple_repeat Simple_repeat 2 24 0 391 220 182 15 chr11 51228892 51229024 -99554529 - MIR3 SINE MIR -5 203 50 185 282 24 106 chr11 51229023 51229108 -99554445 + MIR SINE MIR 6 83 -179 * 1937 148 3 0 chr11 51230603 51230908 -99552645 + AluSx SINE Alu 3 308 -4 201 196 36 54 chr11 51231084 51231140 -99552413 + MIR SINE MIR 196 250 -12 695 303 39 4 chr11 51231168 51231402 -99552151 + MIR SINE MIR 21 262 0 312 380 90 0 chr11 51232555 51232721 -99550832 + MIR SINE MIR 79 259 -3 2064 129 3 0 chr11 51233381 51233691 -99549862 + AluSx SINE Alu 1 311 -1 2163 114 0 0 chr11 51233799 51234097 -99549456 - AluSx SINE Alu -14 298 1 589 147 0 29 chr11 51234097 51234199 -99549354 - L1MA9 LINE L1 -361 5951 5853 455 145 11 4 chr11 51234199 51234297 -99549256 - L1P5 LINE L1 -400 5754 5655 295 255 157 38 chr11 51234279 51234514 -99549039 - L1M4 LINE L1 -2154 3992 3730 * 210 118 0 0 chr11 51235170 51235204 -99548349 + (A)n Simple_repeat Simple_repeat 1 34 0 201 175 0 0 chr11 51236826 51236866 -99546687 + GA-rich Low_complexity Low_complexity 3 42 0 2159 103 0 7 chr11 51236956 51237257 -99546296 - AluSx SINE Alu -13 299 1 278 278 52 43 chr11 51237338 51237453 -99546100 - MIR SINE MIR -75 133 18 219 217 217 57 chr11 51238122 51238279 -99545274 - MER5A DNA MER1_type 0 189 8 2002 112 7 7 chr11 51238878 51239174 -99544379 - AluSx SINE Alu -16 296 1 360 271 24 0 chr11 51239337 51239422 -99544131 + MIR3 SINE MIR 93 179 -29 2557 39 3 0 chr11 51239845 51240155 -99543398 - AluY SINE Alu 0 311 1 223 385 155 0 chr11 51240336 51240497 -99543056 - MIR SINE MIR -64 198 13 1427 213 75 9 chr11 51240546 51240865 -99542688 + MER58B DNA MER1_type 2 341 0 312 245 118 29 chr11 51241727 51241829 -99541724 - MIR SINE MIR 0 262 152 447 116 35 23 chr11 51241836 51241922 -99541631 - L1MC1 LINE L1 -2 6331 6245 2033 103 7 3 chr11 51241960 51242242 -99541311 + AluSq SINE Alu 24 306 -7 313 286 111 2 chr11 51242531 51242654 -99540899 - MIR SINE MIR -71 137 3 2012 83 20 46 chr11 51243751 51244053 -99539500 - AluSq SINE Alu -19 294 1 248 286 24 48 chr11 51244319 51244403 -99539150 + MIR3 SINE MIR 91 172 -36 1532 199 17 0 chr11 51244522 51244824 -99538729 + AluJo SINE Alu 5 311 -1 513 294 60 16 chr11 51246184 51246368 -99537185 + MIR SINE MIR 14 205 -57 407 203 86 61 chr11 51247063 51247226 -99536327 + LTR33 LTR ERVL 1 167 -354 601 235 27 0 chr11 51247255 51247404 -99536149 + LTR33 LTR ERVL 368 520 -1 2288 90 3 3 chr11 51248094 51248406 -99535147 - AluSx SINE Alu 0 312 1 264 257 86 9 chr11 51248992 51249097 -99534456 + MIR SINE MIR 19 131 -77 1653 175 7 3 chr11 51249138 51249430 -99534123 + AluJo SINE Alu 1 293 -19 298 171 92 40 chr11 51249509 51249585 -99533968 + MIR SINE MIR 112 191 -71 388 301 58 58 chr11 51249598 51249804 -99533749 - MIR SINE MIR -51 211 6 260 195 0 0 chr11 51249834 51249875 -99533678 + L2 LINE L2 3213 3253 -19 304 216 227 10 chr11 51250227 51250324 -99533229 - L2 LINE L2 -20 3293 3176 2113 88 30 7 chr11 51251532 51251837 -99531716 - AluSx SINE Alu 0 312 1 2125 88 17 7 chr11 51251837 51252132 -99531421 - AluSc SINE Alu -11 298 1 2113 119 3 0 chr11 51252133 51252436 -99531117 - AluSx SINE Alu -8 304 1 931 218 98 33 chr11 51252439 51252737 -99530816 - MLT1A1 LTR MaLR -40 388 1 237 220 17 34 chr11 51253662 51253721 -99529832 + MIR SINE MIR 116 173 -89 21 57 0 0 chr11 51254150 51254185 -99529368 + AT_rich Low_complexity Low_complexity 1 35 0 1549 111 0 0 chr11 51254218 51254426 -99529127 - AluJb SINE Alu -19 293 86 233 302 16 0 chr11 51254740 51254803 -99528750 + MIR SINE MIR 63 126 -136 207 88 0 0 chr11 51255356 51255390 -99528163 + (TTAG)n Simple_repeat Simple_repeat 3 36 0 1830 106 64 0 chr11 51255391 51255656 -99527897 - AluSg SINE Alu -28 282 1 1612 154 16 49 chr11 51255659 51255964 -99527589 - AluJo SINE Alu -17 295 1 200 269 39 39 chr11 51256324 51256402 -99527151 + MIR SINE MIR 46 123 -85 2224 100 6 0 chr11 51257086 51257397 -99526156 - AluSp SINE Alu 0 313 1 235 356 33 11 chr11 51257970 51258060 -99525493 + L2 LINE L2 2992 3083 -189 2184 113 3 0 chr11 51258278 51258589 -99524964 - AluSx SINE Alu 0 312 1 648 228 76 0 chr11 51258860 51259018 -99524535 + MER58 DNA MER1_type 1 170 -171 278 227 23 8 chr11 51259883 51259993 -99523560 + (TA)n Simple_repeat Simple_repeat 2 116 -15 2043 128 6 16 chr11 51259993 51260305 -99523248 - AluSx SINE Alu -3 309 1 278 227 23 8 chr11 51260305 51260322 -99523231 + (TA)n Simple_repeat Simple_repeat 116 131 0 1049 214 42 14 chr11 51260474 51260689 -99522864 + MER58A DNA MER1_type 4 224 0 840 234 96 0 chr11 51260697 51260915 -99522638 + Charlie1 DNA MER1_type 1 239 -2522 670 222 0 7 chr11 51260898 51261042 -99522511 + Charlie1 DNA MER1_type 2619 2761 0 * 488 207 45 0 chr11 51261185 51261296 -99522257 + FLAM_A SINE Alu 9 124 -18 1038 30 22 7 chr11 51261486 51261621 -99521932 + L1PA5 LINE L1 6010 6146 -8 407 298 147 16 chr11 51261997 51262188 -99521365 - MIR SINE MIR -45 217 2 2786 163 44 14 chr11 51262486 51263056 -99520497 + L1MB4 LINE L1 5593 6179 -1 269 369 0 0 chr11 51263236 51263347 -99520206 - L1ME LINE L1 -301 5820 5710 26 0 0 0 chr11 51263453 51263479 -99520074 + AT_rich Low_complexity Low_complexity 1 26 0 530 275 14 0 chr11 51263944 51264086 -99519467 - L1ME3A LINE L1 -7 6163 6020 2307 75 3 10 chr11 51264094 51264400 -99519153 - AluSp SINE Alu -9 304 1 2044 133 13 0 chr11 51264400 51264701 -99518852 - AluSx SINE Alu -7 305 1 257 204 0 0 chr11 51266375 51266424 -99517129 - L2 LINE L2 0 3313 3265 605 228 39 54 chr11 51266453 51266712 -99516841 - L2 LINE L2 -232 3081 2827 181 322 0 0 chr11 51267372 51267431 -99516122 + MIR3 SINE MIR 139 197 -11 188 231 13 90 chr11 51267498 51267576 -99515977 - MIR SINE MIR -75 187 116 402 298 54 48 chr11 51267592 51267760 -99515793 + MIR3 SINE MIR 2 140 -68 2045 111 3 3 chr11 51267778 51268067 -99515486 + AluSc SINE Alu 1 289 -20 250 281 49 12 chr11 51268178 51268260 -99515293 - MIR3 SINE MIR -42 166 82 1985 128 17 3 chr11 51268957 51269254 -99514299 - AluSx SINE Alu -11 301 1 1159 236 43 10 chr11 51269595 51269907 -99513646 - MER33 DNA MER1_type -9 315 1 852 96 9 0 chr11 51269981 51270096 -99513457 + FLAM_C SINE Alu 1 116 -27 30 0 0 0 chr11 51270096 51270126 -99513427 + AT_rich Low_complexity Low_complexity 1 30 0 3053 205 21 34 chr11 51270710 51271499 -99512054 - L1 LINE L1 -945 5201 4423 189 0 0 0 chr11 51271820 51271841 -99511712 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 688 271 64 0 chr11 51272140 51272343 -99511210 - MER58A DNA MER1_type -4 220 5 200 197 8 60 chr11 51272695 51272812 -99510741 + C-rich Low_complexity Low_complexity 4 114 0 842 154 0 37 chr11 51272812 51272948 -99510605 - FLAM_C SINE Alu -2 131 1 613 269 43 70 chr11 51273251 51273507 -99510046 + MIR SINE MIR 14 262 0 2190 115 0 0 chr11 51274471 51274783 -99508770 - AluSx SINE Alu 0 312 1 1480 156 72 0 chr11 51274785 51275061 -99508492 - AluJo SINE Alu -16 296 1 295 318 0 12 chr11 51275065 51275150 -99508403 - MIR SINE MIR -67 141 58 405 267 82 34 chr11 51275456 51275602 -99507951 - MIR3 SINE MIR -15 193 41 252 167 0 0 chr11 51275644 51275692 -99507861 + (TG)n Simple_repeat Simple_repeat 1 48 0 366 301 166 12 chr11 51276160 51276323 -99507230 + MIR SINE MIR 6 193 -69 2127 99 7 0 chr11 51276776 51277069 -99506484 - AluSx SINE Alu -17 295 1 1011 253 183 26 chr11 51277147 51277365 -99506188 - L1ME4a LINE L1 -14 6107 5924 2113 95 17 7 chr11 51277365 51277659 -99505894 - AluSq SINE Alu -16 297 1 1011 253 183 26 chr11 51277659 51277970 -99505583 - L1ME4a LINE L1 -197 5924 5495 312 326 20 0 chr11 51278661 51278759 -99504794 - MIR SINE MIR -72 136 37 1300 229 164 0 chr11 51279138 51279443 -99504110 - LTR18A LTR ERVL 0 357 3 1522 204 77 50 chr11 51280025 51280385 -99503168 - MLT1C LTR MaLR 0 467 91 7258 45 29 0 chr11 51280385 51281837 -99501716 - L1PA5 LINE L1 -6 6148 4668 1522 204 77 50 chr11 51281837 51281931 -99501622 - MLT1C LTR MaLR -376 91 1 1801 195 56 56 chr11 51281956 51282177 -99501376 - LOR1a LTR ERV1 0 497 277 1631 52 0 0 chr11 51282177 51282370 -99501183 + AluY SINE Alu 1 193 -118 1801 195 56 56 chr11 51282370 51282645 -99500908 - LOR1a LTR ERV1 -219 278 1 744 218 86 62 chr11 51282940 51283183 -99500370 - MIR SINE MIR -4 258 10 524 259 99 0 chr11 51284230 51284361 -99499192 + MIR SINE MIR 48 191 -71 374 262 85 14 chr11 51284443 51284587 -99498966 + MIR SINE MIR 14 168 -40 21 57 0 0 chr11 51285053 51285088 -99498465 + AT_rich Low_complexity Low_complexity 1 35 0 225 337 12 12 chr11 51285351 51285434 -99498119 + MIR SINE MIR 65 147 -61 909 194 72 0 chr11 51285507 51285729 -99497824 - AluJo SINE Alu 0 312 75 1901 138 30 3 chr11 51286049 51286353 -99497200 - AluJo SINE Alu 0 312 1 2053 110 7 7 chr11 51286464 51286754 -99496799 - AluSc SINE Alu -19 290 1 392 199 338 7 chr11 51286929 51287065 -99496488 - MER5A DNA MER1_type 0 189 9 231 295 0 13 chr11 51287138 51287216 -99496337 - L2 LINE L2 -12 3301 3225 2133 117 3 0 chr11 51287339 51287648 -99495905 + AluSx SINE Alu 1 312 0 424 244 98 62 chr11 51287851 51288044 -99495509 - MIR SINE MIR -43 219 20 259 171 129 0 chr11 51288052 51288135 -99495418 + MER5B DNA MER1_type 46 133 -45 1824 160 16 3 chr11 51288140 51288447 -99495106 + AluJb SINE Alu 1 311 -1 610 55 22 0 chr11 51288539 51288630 -99494923 + (TG)n Simple_repeat Simple_repeat 1 93 0 415 198 240 14 chr11 51288871 51289047 -99494506 - Charlie8 DNA MER1_type -2142 275 83 1042 180 12 6 chr11 51289082 51289254 -99494299 + FAM SINE Alu 3 175 0 360 217 22 22 chr11 51290174 51290266 -99493287 + L1ME LINE L1 5646 5737 -384 1546 135 8 64 chr11 51290391 51290657 -99492896 + AluJb SINE Alu 40 290 -22 2165 128 3 10 chr11 51291116 51291428 -99492125 - AluSg SINE Alu 0 310 1 584 143 38 0 chr11 51291581 51291686 -99491867 - L1MD3 LINE L1 -166 7829 7721 413 91 11 34 chr11 51291837 51291925 -99491628 + (TCTCCC)n Simple_repeat Simple_repeat 5 90 0 303 255 51 10 chr11 51292721 51292819 -99490734 + MIR SINE MIR 91 192 -70 1080 204 85 0 chr11 51293300 51293501 -99490052 + MER58A DNA MER1_type 1 218 -6 1550 110 5 0 chr11 51293601 51293810 -99489743 - AluSx SINE Alu -102 210 1 2331 84 3 16 chr11 51294797 51295107 -99488446 - AluSc SINE Alu -3 306 1 222 37 0 0 chr11 51295215 51295242 -99488311 + (CA)n Simple_repeat Simple_repeat 2 28 0 2173 109 0 3 chr11 51295266 51295559 -99487994 - AluSx SINE Alu -20 292 1 205 152 0 0 chr11 51297325 51297358 -99486195 + (TG)n Simple_repeat Simple_repeat 2 34 0 432 0 0 0 chr11 51297479 51297527 -99486026 + (TA)n Simple_repeat Simple_repeat 1 48 0 625 167 87 0 chr11 51299906 51300032 -99483521 - MLT1B LTR MaLR 0 390 254 897 127 0 0 chr11 51300032 51300158 -99483395 - AluSg/x SINE Alu -10 302 177 1450 147 24 4 chr11 51300162 51300246 -99483307 - MLT1B LTR MaLR -134 256 175 2321 93 0 7 chr11 51300246 51300547 -99483006 - AluSg SINE Alu -11 299 1 1450 147 24 4 chr11 51300547 51300713 -99482840 - MLT1B LTR MaLR -215 175 1 2632 45 0 3 chr11 51301471 51301779 -99481774 - AluY SINE Alu -4 307 1 1641 176 156 65 chr11 51302205 51302700 -99480853 + MLT1F LTR MaLR 1 540 -2 715 262 31 18 chr11 51302923 51303152 -99480401 - L1ME3A LINE L1 -8 6162 5931 1026 173 0 0 chr11 51303178 51303340 -99480213 - FRAM SINE Alu -18 158 1 2111 131 0 7 chr11 51303349 51303647 -99479906 - AluSq SINE Alu -17 296 1 699 295 60 45 chr11 51303649 51303938 -99479615 - L1ME3A LINE L1 -230 5891 5593 1636 178 24 10 chr11 51303938 51304230 -99479323 + AluJb SINE Alu 1 296 -16 699 295 60 45 chr11 51304230 51304343 -99479210 - L1ME3A LINE L1 -528 5593 5483 2351 153 20 65 chr11 51304406 51304796 -99478757 - MSTB LTR MaLR 0 426 57 2074 129 7 0 chr11 51304796 51305098 -99478455 - AluSq SINE Alu -7 306 3 2351 153 20 65 chr11 51305098 51305153 -99478400 - MSTB LTR MaLR -369 57 1 281 290 35 53 chr11 51305544 51305713 -99477840 + L3 LINE CR1 1221 1386 -191 1210 229 138 52 chr11 51306129 51306628 -99476925 - LTR10B LTR ERV1 -5 542 1 237 250 238 0 chr11 51306786 51306870 -99476683 + MIR SINE MIR 159 262 0 255 310 100 0 chr11 51306914 51307014 -99476539 + L2 LINE L2 3160 3269 -3 1885 108 25 14 chr11 51307413 51307690 -99475863 + L1PA13 LINE L1 5884 6163 0 760 163 8 23 chr11 51307789 51307918 -99475635 - FLAM_A SINE Alu -6 127 1 1601 148 7 49 chr11 51308676 51308981 -99474572 - AluJo SINE Alu -20 292 1 2135 112 3 3 chr11 51309214 51309500 -99474053 - AluSx SINE Alu -26 286 1 296 298 12 12 chr11 51309626 51309710 -99473843 - MIR SINE MIR -158 104 21 285 333 29 19 chr11 51309973 51310078 -99473475 + MIR SINE MIR 59 164 -98 2203 110 3 0 chr11 51310330 51310622 -99472931 - AluSx SINE Alu -15 297 5 233 163 70 0 chr11 51311313 51311356 -99472197 - MLT1J2 LTR MaLR -14 436 391 506 302 60 28 chr11 51311383 51311537 -99472016 - MLT1J1 LTR MaLR -138 308 146 1300 231 31 62 chr11 51311537 51311892 -99471661 - MER2 DNA MER2_type 0 344 1 506 302 60 28 chr11 51311892 51311919 -99471634 - MLT1J1 LTR MaLR -300 146 121 238 270 40 0 chr11 51311922 51311996 -99471557 - MLT1J2 LTR MaLR -373 77 1 306 271 16 25 chr11 51312717 51312839 -99470714 - L1MC4a LINE L1 -1911 5897 5777 2076 136 7 7 chr11 51312935 51313245 -99470308 - AluSx SINE Alu -2 310 1 228 274 108 19 chr11 51313334 51313491 -99470062 - L1MC4a LINE L1 -390 5731 5561 592 270 78 17 chr11 51313636 51313866 -99469687 - MLT1J2 LTR MaLR -206 244 1 292 140 20 0 chr11 51313883 51313932 -99469621 - MSTB1 LTR MaLR 0 432 383 2324 116 14 23 chr11 51313932 51314286 -99469267 + MER4E LTR ERV1 1 351 -428 2842 56 0 9 chr11 51314300 51314642 -99468911 - L1PA4 LINE L1 -3 6152 5814 198 0 0 0 chr11 51314695 51314717 -99468836 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 44443 44 4 0 chr11 51314717 51320840 -99462713 - L1PA3 LINE L1 -10 6145 1 2644 144 22 40 chr11 51320847 51321299 -99462254 + MER4E LTR ERV1 336 779 0 1919 182 26 29 chr11 51321312 51321696 -99461857 - MSTB1 LTR MaLR -49 383 1 308 240 141 19 chr11 51321700 51321937 -99461616 - L1MC4a LINE L1 -756 5410 5283 645 299 53 60 chr11 51322343 51323125 -99460428 + L1M4b LINE L1 -564 618 -5662 278 291 23 0 chr11 51323186 51323272 -99460281 + L1M4b LINE L1 635 722 -5562 * 1285 257 143 17 chr11 51323259 51323576 -99459977 + L1M4b LINE L1 1362 1637 -4926 1995 113 4 14 chr11 51323576 51323851 -99459702 + AluSq SINE Alu 1 272 -41 1285 257 143 17 chr11 51323851 51324150 -99459403 + L1M4b LINE L1 1637 2139 -4424 1148 251 87 46 chr11 51324155 51324974 -99458579 + L1MEc LINE L1 1734 2516 -3699 7209 218 57 27 chr11 51325001 51325311 -99458242 - L1M4c LINE L1 -4516 2137 1838 2180 127 173 16 chr11 51325311 51325681 -99457872 + MSTA LTR MaLR 1 428 0 7209 218 57 27 chr11 51325681 51326617 -99456936 - L1M4c LINE L1 -4815 1838 932 2378 98 0 0 chr11 51326617 51326924 -99456629 + AluY SINE Alu 1 307 -4 7209 218 57 27 chr11 51326924 51327246 -99456307 - L1M4c LINE L1 -5721 932 719 818 188 0 0 chr11 51327246 51327374 -99456179 + FLAM_C SINE Alu 1 128 -5 7209 218 57 27 chr11 51327374 51327545 -99456008 - L1M4c LINE L1 -5934 719 555 2769 124 5 28 chr11 51327591 51328025 -99455528 - L1PB2 LINE L1 0 6151 5728 383 156 82 19 chr11 51328046 51328154 -99455399 - L1P5 LINE L1 -350 5801 5681 238 226 0 0 chr11 51328120 51328173 -99455380 + L1MC4 LINE L1 6648 6700 -1342 * 239 211 18 0 chr11 51328166 51328223 -99455330 - L1MCa LINE L1 -4363 2063 2006 186 227 0 0 chr11 51328230 51328274 -99455279 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 241 291 47 0 chr11 51328274 51328360 -99455193 + L1MC4 LINE L1 6614 6703 -1339 * 252 261 0 22 chr11 51328328 51328420 -99455133 - L1MC4 LINE L1 -1339 6703 6614 203 268 0 0 chr11 51328420 51328461 -99455092 + (CATA)n Simple_repeat Simple_repeat 2 42 0 252 258 32 0 chr11 51328461 51328523 -99455030 + L1MD3 LINE L1 6604 6667 -1328 * 273 273 0 11 chr11 51328488 51328576 -99454977 - L1MC4 LINE L1 -1339 6703 6617 * 344 203 0 0 chr11 51328566 51328630 -99454923 - L1P5 LINE L1 -360 5791 5728 228 86 0 0 chr11 51328637 51328672 -99454881 + (TG)n Simple_repeat Simple_repeat 2 36 0 2187 108 12 18 chr11 51328678 51329011 -99454542 - L1P5 LINE L1 -360 5791 5461 10327 155 37 5 chr11 51329022 51330613 -99452940 + L1PBa LINE L1 1311 2850 -4012 2702 114 14 0 chr11 51330613 51330972 -99452581 + THE1B LTR MaLR 1 364 0 10327 155 37 5 chr11 51330972 51332537 -99451016 + L1PBa LINE L1 2850 4570 -2292 4325 261 81 13 chr11 51332534 51333139 -99450414 - L1M4 LINE L1 -1306 4840 4277 * 1815 161 14 0 chr11 51333139 51333419 -99450134 - AluSx SINE Alu -15 297 14 4325 261 81 13 chr11 51333419 51334804 -99448749 - L1M4 LINE L1 -1869 4277 2668 6260 128 2 15 chr11 51334806 51336275 -99447278 + L1PA16 LINE L1 4708 6165 -1 22 0 0 0 chr11 51336486 51336508 -99447045 + AT_rich Low_complexity Low_complexity 1 22 0 381 58 0 0 chr11 51336703 51336755 -99446798 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 320 178 27 14 chr11 51336914 51336987 -99446566 - MLT1J LTR MaLR -331 180 107 343 317 37 31 chr11 51337231 51337392 -99446161 - MIR SINE MIR -6 256 95 2056 74 4 0 chr11 51337405 51337674 -99445879 - L1PA7 LINE L1 -2 6152 5883 2095 133 13 0 chr11 51337987 51338295 -99445258 - AluSx SINE Alu 0 312 1 371 272 33 0 chr11 51338762 51338854 -99444699 + MIR SINE MIR 168 262 0 360 344 8 0 chr11 51338924 51339046 -99444507 - MIR3 SINE MIR -8 200 78 343 298 30 23 chr11 51339700 51339831 -99443722 + MIR3 SINE MIR 75 206 -2 350 266 55 16 chr11 51340136 51340264 -99443289 + MIR3 SINE MIR 72 204 -4 267 343 197 24 chr11 51340615 51340828 -99442725 - MIR SINE MIR 0 262 13 1563 191 48 7 chr11 51341869 51342162 -99441391 + AluJo SINE Alu 1 305 -7 283 380 31 10 chr11 51342317 51342509 -99441044 - L2 LINE L2 -428 2886 2691 180 356 17 26 chr11 51343105 51343220 -99440333 - L2 LINE L2 -788 2526 2413 2269 101 0 13 chr11 51344137 51344443 -99439110 - AluSq SINE Alu -11 302 1 244 233 33 0 chr11 51345160 51345220 -99438333 + MIR SINE MIR 90 151 -111 311 212 12 0 chr11 51346728 51346813 -99436740 + CT-rich Low_complexity Low_complexity 2 87 0 502 332 72 53 chr11 51347785 51348104 -99435449 + L2 LINE L2 2942 3266 -6 264 249 77 124 chr11 51348230 51348348 -99435205 + MIR SINE MIR 63 168 -94 2047 141 26 0 chr11 51348348 51348652 -99434901 + AluSx SINE Alu 1 312 0 264 249 77 124 chr11 51348652 51348742 -99434811 + MIR SINE MIR 168 261 -1 206 294 49 86 chr11 51348798 51348961 -99434592 - L3 LINE CR1 -245 1332 1176 * 209 283 0 0 chr11 51348945 51348991 -99434562 + L2 LINE L2 3265 3310 -3 529 163 46 128 chr11 51349768 51349964 -99433589 + MER3 DNA MER1_type 29 208 -1 360 274 60 83 chr11 51349964 51350135 -99433418 - MLT1J LTR MaLR -228 283 118 2055 151 3 0 chr11 51350135 51350440 -99433113 - AluSx SINE Alu -6 306 1 360 274 60 83 chr11 51350440 51350519 -99433034 - MLT1J LTR MaLR -393 118 39 347 333 72 0 chr11 51350675 51350786 -99432767 - L2 LINE L2 -4 3309 3191 805 172 48 67 chr11 51350824 51351033 -99432520 + MER3 DNA MER1_type 1 205 -4 2360 277 72 7 chr11 51351366 51352078 -99431475 + L2 LINE L2 1953 2710 -604 213 238 100 25 chr11 51352070 51352150 -99431403 + L2 LINE L2 3038 3123 -190 * 528 204 71 0 chr11 51352325 51352438 -99431115 + L2 LINE L2 3193 3313 0 205 226 0 38 chr11 51352488 51352541 -99431012 - MIR SINE MIR -109 153 103 1868 161 0 44 chr11 51352544 51352860 -99430693 - AluJo SINE Alu -10 302 1 394 283 68 47 chr11 51352883 51353074 -99430479 - MIR3 SINE MIR -8 200 6 307 248 208 24 chr11 51353636 51353761 -99429792 + MIR3 SINE MIR 20 167 -41 234 250 17 0 chr11 51353888 51353948 -99429605 - MLT1K LTR MaLR -17 571 511 2289 65 21 0 chr11 51354198 51354488 -99429065 - AluY SINE Alu -15 296 1 21 0 0 0 chr11 51354541 51354562 -99428991 + AT_rich Low_complexity Low_complexity 1 21 0 504 48 0 0 chr11 51354640 51354667 -99428886 + (CA)n Simple_repeat Simple_repeat 1 90 0 504 48 0 0 chr11 51354667 51354730 -99428823 + (CA)n Simple_repeat Simple_repeat 2 64 0 2131 119 14 0 chr11 51354744 51355039 -99428514 - AluSx SINE Alu -13 299 1 21 36 0 0 chr11 51355263 51355291 -99428262 + AT_rich Low_complexity Low_complexity 1 28 0 1248 103 5 16 chr11 51355291 51355475 -99428078 - L1PA8A LINE L1 -3 6128 5947 320 257 71 18 chr11 51355529 51355642 -99427911 + MIR SINE MIR 24 142 -66 1571 168 39 4 chr11 51355658 51355914 -99427639 + AluJb SINE Alu 1 265 -47 327 25 0 0 chr11 51355930 51355970 -99427583 + (CA)n Simple_repeat Simple_repeat 2 41 0 286 303 25 50 chr11 51357268 51357387 -99426166 + MIR SINE MIR 2 117 -145 6272 124 109 113 chr11 51357462 51359166 -99424387 + pTR5 LTR ERV1 743 2438 0 39526 62 3 0 chr11 51359400 51365528 -99418025 - L1PA5 LINE L1 -3 6151 7 561 322 26 21 chr11 51365994 51366323 -99417230 + MLT1H LTR MaLR 25 326 -83 480 245 25 53 chr11 51367413 51367688 -99415865 - MLT1J LTR MaLR -162 349 5 362 231 95 97 chr11 51367834 51367875 -99415678 - L1MA8 LINE L1 -14 6277 6237 252 0 0 0 chr11 51367875 51367903 -99415650 + (CA)n Simple_repeat Simple_repeat 2 29 0 362 231 95 97 chr11 51367903 51367996 -99415557 - L1MA8 LINE L1 -54 6237 6116 1453 172 67 75 chr11 51367996 51368371 -99415182 - L1ME2 LINE L1 -8 6156 5784 180 0 0 0 chr11 51368371 51368391 -99415162 + (TG)n Simple_repeat Simple_repeat 2 21 0 1453 172 67 75 chr11 51368391 51368479 -99415074 - L1ME2 LINE L1 -380 5784 5697 4987 134 11 2 chr11 51368492 51369329 -99414224 - L1PA16 LINE L1 -5 6161 5318 2320 94 0 3 chr11 51369445 51369744 -99413809 - AluSx SINE Alu -14 298 1 379 225 0 50 chr11 51370363 51370473 -99413080 - L1MC5 LINE L1 -50 7911 7806 1079 206 5 14 chr11 51370473 51370691 -99412862 - MER20 DNA MER1_type 0 219 4 200 214 54 71 chr11 51371687 51371743 -99411810 - L2 LINE L2 -17 3255 3201 355 360 149 0 chr11 51371752 51371974 -99411579 - L2 LINE L2 -2 3270 3016 233 293 73 7 chr11 51372067 51372210 -99411343 - MIR SINE MIR -65 143 18 393 22 0 0 chr11 51372595 51372641 -99410912 + (TG)n Simple_repeat Simple_repeat 1 46 0 2113 150 0 3 chr11 51372922 51373235 -99410318 + AluJb SINE Alu 1 312 0 303 326 43 22 chr11 51373614 51373752 -99409801 + L2 LINE L2 2932 3072 -200 230 323 47 0 chr11 51374919 51375046 -99408507 - L1ME LINE L1 -388 5733 5601 1719 239 132 12 chr11 51375126 51375711 -99407842 + L1MC4 LINE L1 7244 7898 -144 1007 201 48 26 chr11 51375722 51375995 -99407558 - L1MA9 LINE L1 -38 6274 5996 389 189 99 0 chr11 51376051 51376162 -99407391 + L1MC4 LINE L1 7921 8042 0 900 153 7 0 chr11 51376170 51376320 -99407233 + L1PB4 LINE L1 6004 6154 -2 591 111 40 0 chr11 51376506 51376605 -99406948 - L1MA5 LINE L1 0 6300 6198 1852 151 3 13 chr11 51376840 51377139 -99406414 - AluSx SINE Alu -12 300 5 1681 85 0 21 chr11 51377329 51377565 -99405988 - L1PA8A LINE L1 0 6131 5901 232 302 209 0 chr11 51377567 51377706 -99405847 - L1MC/D LINE L1 -2027 6041 5874 3444 180 7 10 chr11 51377717 51378439 -99405114 + L1 LINE L1 4704 5422 -743 489 214 122 122 chr11 51378446 51378783 -99404770 - L1MC/D LINE L1 -2206 5862 5526 280 307 9 0 chr11 51379071 51379185 -99404368 - L1MC/D LINE L1 -1567 4839 4725 471 283 21 21 chr11 51379564 51379797 -99403756 - L1MC5 LINE L1 -60 7901 7669 442 256 88 13 chr11 51379817 51380127 -99403426 - L1MC/D LINE L1 -3737 2669 2374 7511 211 13 7 chr11 51380183 51382672 -99400881 - L1PA16 LINE L1 -8 6158 3635 350 269 29 2 chr11 51382814 51382976 -99400577 - L1MDb LINE L1 -5103 1293 1122 543 327 64 3 chr11 51383228 51383558 -99399995 + L1MC4a LINE L1 5531 5880 -1928 324 0 0 0 chr11 51383610 51383646 -99399907 + (TG)n Simple_repeat Simple_repeat 1 36 0 246 128 0 0 chr11 51383646 51383685 -99399868 + (GA)n Simple_repeat Simple_repeat 2 40 0 574 317 40 5 chr11 51384111 51384313 -99399240 + MIR SINE MIR 16 224 -38 1371 37 0 0 chr11 51384470 51384632 -99398921 + L1PA7 LINE L1 5992 6153 -1 265 361 46 0 chr11 51384907 51385015 -99398538 + MIR SINE MIR 60 172 -90 200 274 65 0 chr11 51385267 51385329 -99398224 + MIR3 SINE MIR 97 162 -46 213 39 0 0 chr11 51385369 51385395 -99398158 + (TG)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chr11 51385394 51385414 -99398139 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 657 119 0 85 chr11 51387355 51387374 -99396179 - L1PA10 LINE L1 -5 6163 6144 180 0 0 0 chr11 51387374 51387394 -99396159 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 657 119 0 85 chr11 51387394 51387492 -99396061 - L1PA10 LINE L1 -24 6144 6056 2724 62 0 22 chr11 51387492 51387850 -99395703 + L1PA10 LINE L1 5603 5952 -216 12724 34 8 0 chr11 51387899 51390089 -99393464 + L1PA4 LINE L1 3958 6155 0 346 274 247 7 chr11 51390221 51390367 -99393186 + MIR3 SINE MIR 19 199 -9 373 208 0 0 chr11 51391302 51391374 -99392179 - MIR SINE MIR -112 150 79 1561 155 39 39 chr11 51391702 51392011 -99391542 - L1MB3 LINE L1 -7 6176 5868 345 164 0 45 chr11 51392204 51392271 -99391282 + MIR SINE MIR 79 142 -120 256 255 108 108 chr11 51393511 51393668 -99389885 + MIR3 SINE MIR 16 172 -36 351 337 101 6 chr11 51394885 51395063 -99388490 - MIR SINE MIR -48 214 20 2215 128 0 7 chr11 51395477 51395782 -99387771 - AluSq SINE Alu -10 303 1 24 0 0 0 chr11 51396675 51396699 -99386854 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr11 51396699 51396722 -99386831 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2032 98 7 4 chr11 51396724 51396998 -99386555 - AluSq SINE Alu -30 283 9 1814 155 18 0 chr11 51397001 51397311 -99386242 - AluSx SINE Alu 0 315 1 227 270 159 71 chr11 51397666 51397792 -99385761 - MIR SINE MIR -98 164 28 4685 217 44 46 chr11 51447792 51449424 -99334129 - L1PBa LINE L1 -2609 4253 2632 245 29 0 29 chr11 51449424 51449459 -99334094 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 10104 119 12 0 chr11 51449460 51451901 -99331652 - L1PA8 LINE L1 -25 6147 3679 * 25158 47 4 0 chr11 51451889 51455969 -99327584 - L1PA4 LINE L1 0 6155 2064 6226 67 21 0 chr11 51455971 51456790 -99326763 + L1PA4 LINE L1 5317 6152 -3 892 151 125 16 chr11 51456802 51457080 -99326473 + PABL_A-int LTR ERV1 3009 4355 -525 2687 112 76 28 chr11 51457084 51457585 -99325968 + PABL_A-int LTR ERV1 3912 4436 -2162 1876 131 23 51 chr11 51457587 51458149 -99325404 + PABL_A-int LTR ERV1 4142 4765 -250 40862 52 2 1 chr11 51458152 51463528 -99320025 + L1P LINE L1 2 5383 -763 357 123 0 0 chr11 51463528 51463585 -99319968 + MER4A LTR ERV1 608 664 0 9305 193 42 8 chr11 51463585 51465571 -99317982 - L1PBa LINE L1 -4810 2053 1 4860 104 23 14 chr11 51465571 51466409 -99317144 - L1M1 LINE L1 -4517 3048 2204 2073 201 38 2 chr11 51466413 51466830 -99316723 - L1M1 LINE L1 -6673 892 461 1546 246 44 10 chr11 51466842 51467430 -99316123 - L1M2 LINE L1 -693 6619 6001 * 7134 46 0 1 chr11 51467425 51468389 -99315164 - L1P LINE L1 -2458 3688 2726 * 7684 179 35 7 chr11 51468388 51470068 -99313485 - L1M2 LINE L1 -1168 5999 4272 729 287 18 9 chr11 51470058 51470389 -99313164 - L1M2 LINE L1 -4846 2252 1919 * 474 370 56 37 chr11 51470454 51470832 -99312721 - L1M2 LINE L1 -5288 1880 1496 572 46 93 0 chr11 51471557 51471753 -99311800 + (TA)n Simple_repeat Simple_repeat 1 214 0 27 29 0 0 chr11 51471753 51471787 -99311766 + AT_rich Low_complexity Low_complexity 1 34 0 231 36 0 0 chr11 51473314 51473342 -99310211 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 241 325 13 0 chr11 51473346 51473423 -99310130 - MIR SINE MIR -94 114 37 302 294 76 8 chr11 51473732 51473851 -99309702 + MIR SINE MIR 99 225 -37 475 320 0 8 chr11 51473966 51474091 -99309462 - L2 LINE L2 -1 3312 3189 312 327 9 0 chr11 51474096 51474209 -99309344 - MIR SINE MIR -2 260 147 2563 47 0 0 chr11 51474475 51474773 -99308780 + AluY SINE Alu 1 298 -13 233 226 19 0 chr11 51474893 51474946 -99308607 + (TATG)n Simple_repeat Simple_repeat 4 57 0 1644 128 4 8 chr11 51474972 51475215 -99308338 - AluSx SINE Alu -70 242 1 342 288 166 12 chr11 51475583 51475746 -99307807 + MIR3 SINE MIR 16 203 -5 30 69 0 0 chr11 51476361 51476419 -99307134 + AT_rich Low_complexity Low_complexity 1 58 0 1038 264 65 11 chr11 51476611 51477055 -99306498 - L1ME3 LINE L1 -211 5951 5484 1022 224 8 42 chr11 51477105 51477368 -99306185 - MLT1A1 LTR MaLR 0 365 112 497 277 131 8 chr11 51477382 51477649 -99305904 + L1M4 LINE L1 5087 5386 -760 482 330 29 46 chr11 51477729 51477968 -99305585 - LTR16A1 LTR ERVL -34 423 189 974 249 24 67 chr11 51478093 51478467 -99305086 + MSTD LTR MaLR 1 358 -38 6387 97 4 11 chr11 51478467 51479844 -99303709 + L1PA11 LINE L1 4801 6172 -2 12666 186 82 3 chr11 51479844 51482458 -99301095 - L1M1 LINE L1 -4728 2837 17 5035 157 38 23 chr11 51482474 51483827 -99299726 + L1MA7 LINE L1 4892 6262 -29 1321 253 72 36 chr11 51484081 51484418 -99299135 - L1ME3A LINE L1 -219 5951 5628 234 0 0 0 chr11 51484418 51484444 -99299109 + (TA)n Simple_repeat Simple_repeat 2 27 0 1321 253 72 36 chr11 51484444 51484770 -99298783 - L1ME3A LINE L1 -542 5628 5264 494 235 126 77 chr11 51484770 51485017 -99298536 - LTR16B LTR ERVL 0 464 206 246 176 20 0 chr11 51485301 51485352 -99298201 - L1MC/D LINE L1 -2138 5670 5619 2981 166 42 38 chr11 51485450 51486064 -99297489 + LTR31 LTR ERV1 1 617 -2 238 430 0 20 chr11 51486158 51486258 -99297295 + L2 LINE L2 3128 3225 -47 299 339 17 42 chr11 51487026 51487144 -99296409 + MIR3 SINE MIR 9 123 -85 199 378 0 27 chr11 51487145 51487219 -99296334 + MIR SINE MIR 64 135 -73 395 209 18 27 chr11 51487280 51487390 -99296163 + L1MD2 LINE L1 6241 6349 -10 * 489 249 113 6 chr11 51487389 51487566 -99295987 + L1MEc LINE L1 1627 1822 -4574 365 279 156 34 chr11 51488378 51488557 -99294996 - MIR SINE MIR -12 250 50 616 261 174 5 chr11 51488571 51488766 -99294787 + MIR SINE MIR 1 228 -34 1916 205 57 49 chr11 51489145 51489638 -99293915 - LOR1a LTR ERV1 0 497 1 2073 146 0 0 chr11 51491656 51491950 -99291603 - AluSx SINE Alu -18 294 1 207 215 11 97 chr11 51491980 51492073 -99291480 - MIR SINE MIR -56 206 122 266 321 12 79 chr11 51492348 51492411 -99291142 + MIR SINE MIR 1 67 -195 2281 93 10 3 chr11 51492411 51492713 -99290840 - AluY SINE Alu -7 304 1 2737 74 16 0 chr11 51492714 51493078 -99290475 - L1PA10 LINE L1 -1 6167 5798 266 321 12 79 chr11 51493078 51493177 -99290376 + MIR SINE MIR 66 154 -108 757 161 0 0 chr11 51493177 51493307 -99290246 - L1MA9 LINE L1 -373 5939 5810 313 306 41 0 chr11 51493345 51493443 -99290110 + MIR SINE MIR 145 246 -16 4883 140 35 88 chr11 51493472 51494603 -99288950 - MER11C LTR ERVK 0 1071 1 1868 96 68 0 chr11 51495026 51495306 -99288247 + L1PA15 LINE L1 5860 6158 -7 265 60 0 40 chr11 51495667 51495717 -99287836 + (TTTTA)n Simple_repeat Simple_repeat 1 48 0 3549 39 2 0 chr11 51495717 51496158 -99287395 - L1PA3 LINE L1 -24 6131 5690 305 206 0 15 chr11 51496529 51496597 -99286956 - L1ME4a LINE L1 -83 6038 5972 210 275 0 0 chr11 51496610 51496679 -99286874 + CT-rich Low_complexity Low_complexity 5 73 0 411 253 38 2 chr11 51496843 51497007 -99286546 - L1ME4a LINE L1 -308 5813 5642 191 203 152 51 chr11 51497385 51497464 -99286089 - L2 LINE L2 -494 2820 2734 311 281 88 35 chr11 51497676 51498061 -99285492 + L1ME LINE L1 5177 5593 -573 205 156 0 0 chr11 51498411 51498443 -99285110 + (TG)n Simple_repeat Simple_repeat 1 32 0 2810 45 22 0 chr11 51498601 51498956 -99284597 - L1PA4 LINE L1 -2 6153 5791 180 280 196 14 chr11 51499359 51499502 -99284051 + MIR SINE MIR 88 256 -6 22 0 0 0 chr11 51500037 51500059 -99283494 + AT_rich Low_complexity Low_complexity 1 22 0 439 353 42 12 chr11 51500146 51500387 -99283166 + MIR SINE MIR 2 249 -13 1264 109 10 0 chr11 51500568 51500770 -99282783 + L1MA8 LINE L1 6009 6212 -79 378 159 16 0 chr11 51500867 51500930 -99282623 - MER66-int LTR ERV1 0 6676 6613 8438 277 38 20 chr11 51501050 51506158 -99277395 - MER66-int LTR ERV1 -1580 6176 1253 2748 61 9 0 chr11 51506356 51506701 -99276852 + L1PA8 LINE L1 5806 6153 -19 186 43 0 0 chr11 51506704 51506727 -99276826 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 349 93 0 19 chr11 51506918 51506972 -99276581 - MER66-int LTR ERV1 -5609 1067 1015 388 283 19 0 chr11 51507049 51507155 -99276398 - MER66-int LTR ERV1 -6169 507 400 1694 197 39 57 chr11 51507236 51507693 -99275860 - MER41B LTR ERV1 -36 599 151 325 137 55 0 chr11 51507735 51507808 -99275745 + L1MA8 LINE L1 6209 6285 -6 3944 55 49 2 chr11 51508006 51508513 -99275040 - L1PA7 LINE L1 -13 6141 5611 2388 54 3 3 chr11 51509082 51509377 -99274176 - AluY SINE Alu -16 295 1 321 285 105 29 chr11 51509580 51509752 -99273801 - MIR SINE MIR -66 196 12 2125 131 0 0 chr11 51510049 51510340 -99273213 + AluSx SINE Alu 3 293 -19 726 189 135 33 chr11 51510546 51510790 -99272763 + ORSL DNA AcHobo 4 272 -3 40756 51 3 4 chr11 51511565 51517720 -99265833 + L1PA4 LINE L1 1 6147 -8 3269 217 134 54 chr11 51521288 51522426 -99261127 - L1M3e LINE L1 -5769 1261 32 1083 153 128 17 chr11 51522556 51522791 -99260762 - MSTA LTR MaLR 0 428 168 8314 144 23 41 chr11 51522798 51524371 -99259182 - MSTA-int LTR MaLR -33 1547 3 1901 154 156 3 chr11 51524373 51524744 -99258809 - MSTA LTR MaLR 0 428 1 4008 156 16 21 chr11 51524754 51526390 -99257163 + L1PB3 LINE L1 4480 6154 0 259 95 143 16 chr11 51526390 51526453 -99257100 + Charlie1 DNA MER1_type 2479 2549 -212 395 231 9 9 chr11 51526453 51526561 -99256992 + HAL1 LINE L1 1268 1375 -1132 4276 127 27 17 chr11 51526637 51527223 -99256330 - LTR62 LTR ERVK -5 714 135 492 59 0 0 chr11 51527223 51527291 -99256262 + (TATG)n Simple_repeat Simple_repeat 2 69 0 1905 161 0 0 chr11 51527291 51527577 -99255976 - AluSx SINE Alu -26 286 1 4276 127 27 17 chr11 51527577 51527696 -99255857 - LTR62 LTR ERVK -583 136 1 734 234 47 5 chr11 51527696 51527910 -99255643 + HAL1 LINE L1 1425 1647 -860 722 280 39 31 chr11 51527912 51528198 -99255355 + MLT1H LTR MaLR 1 288 -261 302 261 132 18 chr11 51528289 51528447 -99255106 - L1 LINE L1 -863 5283 5113 347 248 62 41 chr11 51528510 51528655 -99254898 + HAL1 LINE L1 2298 2445 -62 269 273 50 65 chr11 51528702 51528841 -99254712 + L2 LINE L2 2536 2672 -642 306 0 0 0 chr11 51528864 51528898 -99254655 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 355 286 20 98 chr11 51529255 51529552 -99254001 - MLT1I LTR MaLR -3 406 133 1976 153 3 0 chr11 51529977 51530278 -99253275 - AluSx SINE Alu -10 302 1 219 274 0 0 chr11 51532186 51532248 -99251305 + (CA)n Simple_repeat Simple_repeat 1 62 0 213 94 0 0 chr11 51532399 51532431 -99251122 + (T)n Simple_repeat Simple_repeat 1 32 0 277 366 16 16 chr11 51532904 51533027 -99250526 + MIR SINE MIR 32 154 -108 186 191 0 0 chr11 51533521 51533563 -99249990 + A-rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr11 51533652 51533675 -99249878 + AT_rich Low_complexity Low_complexity 1 23 0 229 280 89 19 chr11 51534062 51534219 -99249334 + L1ME4a LINE L1 5615 5782 -339 29 28 0 0 chr11 51534253 51534289 -99249264 + AT_rich Low_complexity Low_complexity 1 36 0 348 306 76 0 chr11 51534393 51534550 -99249003 + L1ME4a LINE L1 5953 6121 0 214 268 36 0 chr11 51535814 51535870 -99247683 + MIR SINE MIR 150 207 -55 2153 131 3 0 chr11 51535988 51536286 -99247267 - AluSq SINE Alu -14 299 1 516 227 99 7 chr11 51536299 51536440 -99247113 + MIR SINE MIR 73 226 -36 409 278 91 28 chr11 51536813 51536989 -99246564 - MIR SINE MIR -70 192 6 506 232 71 0 chr11 51537644 51537756 -99245797 + MIR SINE MIR 79 198 -64 182 327 118 7 chr11 51537717 51537870 -99245683 - L2 LINE L2 -1541 1773 1604 * 209 239 120 0 chr11 51538116 51538233 -99245320 - L2 LINE L2 -1572 1742 1612 518 254 80 40 chr11 51538281 51538580 -99244973 + MLT1L LTR MaLR 4 314 -301 1967 138 16 62 chr11 51538774 51538981 -99244572 - L1PA15 LINE L1 0 6165 5981 2294 100 10 0 chr11 51538981 51539280 -99244273 - AluSx SINE Alu -8 304 3 1967 138 16 62 chr11 51539280 51539441 -99244112 - L1PA15 LINE L1 -184 5981 5814 1463 169 11 50 chr11 51539691 51539970 -99243583 - AluJo SINE Alu -44 268 1 451 224 37 0 chr11 51539971 51540105 -99243448 + L1M4 LINE L1 4095 4233 -1913 1064 219 7 30 chr11 51540106 51540376 -99243177 - MER76 LTR ERV 0 688 425 8621 160 42 11 chr11 51540379 51540976 -99242577 - L1PBa LINE L1 -2319 4543 3966 2116 146 10 0 chr11 51540976 51541284 -99242269 - AluSx SINE Alu -1 311 1 8621 160 42 11 chr11 51541284 51544336 -99239217 - L1PBa LINE L1 -2896 3966 634 973 174 26 0 chr11 51544336 51544531 -99239022 - L1PBa LINE L1 -6663 200 1 2414 197 40 67 chr11 51544582 51544720 -99238833 - LTR9 LTR ERV1 0 612 472 180 0 0 0 chr11 51544720 51544740 -99238813 + (GA)n Simple_repeat Simple_repeat 2 21 0 2414 197 40 67 chr11 51544740 51545230 -99238323 - LTR9 LTR ERV1 -140 472 1 2171 223 34 39 chr11 51545232 51545933 -99237620 - LTR9-int LTR ERV1 -1 6995 6298 7280 150 55 43 chr11 51545963 51548095 -99235458 - LTR9-int LTR ERV1 -1803 5615 3510 3220 197 49 18 chr11 51548095 51548765 -99234788 + LTR8 LTR ERV1 1 691 0 7280 150 55 43 chr11 51548765 51549458 -99234095 - LTR9-int LTR ERV1 -3908 3510 608 3995 191 48 36 chr11 51549462 51551146 -99232407 - HUERS-P3b LTR ERV1 -5694 1724 15 1893 201 77 67 chr11 51551151 51551766 -99231787 - LTR9 LTR ERV1 -1 793 1 4346 123 6 14 chr11 51551767 51552545 -99231008 - L1M1 LINE L1 -4078 3487 2716 22076 48 4 3 chr11 51552546 51556167 -99227386 - L1PA4 LINE L1 0 6155 2552 9853 105 6 1 chr11 51556167 51557619 -99225934 - L1PA4 LINE L1 -4682 1464 7 2222 114 13 8 chr11 51557632 51558018 -99225535 - L1M1 LINE L1 -4839 2726 2339 12814 25 0 0 chr11 51558028 51559620 -99223933 - L1PA2 LINE L1 -743 5403 3812 6264 26 0 0 chr11 51559620 51560346 -99223207 + L1PA2 LINE L1 5428 6153 -2 3959 168 28 113 chr11 51560969 51562058 -99221495 - L1M1 LINE L1 -5218 2347 1352 472 215 15 22 chr11 51562055 51562190 -99221363 - L1M1 LINE L1 -7410 155 22 * 2765 246 96 31 chr11 51562320 51563002 -99220551 + L1M4 LINE L1 -258 507 -5773 2188 122 3 0 chr11 51563002 51563296 -99220257 + AluY SINE Alu 1 295 -16 2765 246 96 31 chr11 51563296 51563580 -99219973 + L1M4 LINE L1 507 771 -5509 1669 206 11 17 chr11 51563581 51563941 -99219612 - MLT1A1 LTR MaLR -5 360 3 202 328 0 0 chr11 51563948 51564009 -99219544 + (TA)n Simple_repeat Simple_repeat 1 61 0 2568 272 35 14 chr11 51564010 51564946 -99218607 + L1M4 LINE L1 785 1740 -4644 4245 30 1 0 chr11 51564948 51565561 -99217992 - L1P1 LINE L1 -690 5465 4852 4767 39 0 0 chr11 51565561 51566122 -99217431 + L1PA3 LINE L1 5591 6155 0 355 275 17 55 chr11 51566126 51566401 -99217152 + L1M4 LINE L1 1730 2138 -4425 724 239 0 53 chr11 51566440 51566683 -99216870 + L1M4 LINE L1 2433 2662 -3720 794 183 70 32 chr11 51566689 51566875 -99216678 - MLT1A1 LTR MaLR -48 317 125 3848 215 40 31 chr11 51566887 51568136 -99215417 + L1M4 LINE L1 2670 3929 -2453 38729 53 5 1 chr11 51568137 51574065 -99209488 + L1PA4 LINE L1 204 6155 0 373 188 21 188 chr11 51574074 51574308 -99209245 + L1M4 LINE L1 3920 4114 -2268 198 118 0 0 chr11 51575264 51575298 -99208255 + (T)n Simple_repeat Simple_repeat 1 34 0 465 303 59 9 chr11 51575302 51575625 -99207928 - L1MC4a LINE L1 -1856 5952 5614 39359 59 3 6 chr11 51575652 51581828 -99201725 - L1PA4 LINE L1 -3 6152 3 251 306 63 45 chr11 51583112 51583223 -99200330 + MIR SINE MIR 34 146 -62 616 288 34 47 chr11 51583474 51583707 -99199846 + MIR SINE MIR 33 262 0 225 227 196 10 chr11 51585115 51585212 -99198341 - L1ME4a LINE L1 0 6121 6007 21 36 0 0 chr11 51585283 51585311 -99198242 + AT_rich Low_complexity Low_complexity 1 28 0 313 192 19 67 chr11 51587273 51587377 -99196176 - LTR41 LTR ERVL -10 763 665 373 250 0 37 chr11 51587922 51588058 -99195495 - LTR41 LTR ERVL -641 132 2 1693 148 74 0 chr11 51588383 51588654 -99194899 - AluSx SINE Alu -21 291 1 261 169 0 0 chr11 51589577 51589636 -99193917 - L1PB1 LINE L1 -3 6148 6090 * 7424 43 6 6 chr11 51589630 51592715 -99190838 - L1PA4 LINE L1 -4 6151 3009 1421 74 0 0 chr11 51592712 51592902 -99190651 + L1P LINE L1 593 782 -5364 * 1307 151 4 4 chr11 51592898 51593136 -99190417 - L1PB1 LINE L1 -48 6103 5866 * 1514 183 34 17 chr11 51593217 51593566 -99189987 - L1MA9 LINE L1 -1 6311 5957 925 269 108 19 chr11 51593822 51594238 -99189315 - LTR16A1 LTR ERVL -4 453 1 405 352 56 25 chr11 51594243 51594527 -99189026 + L2 LINE L2 2561 2853 -461 281 265 0 29 chr11 51594543 51594611 -99188942 + L2 LINE L2 3207 3272 0 2106 121 6 22 chr11 51594744 51595059 -99188494 - AluSg SINE Alu 0 310 1 262 304 23 108 chr11 51595071 51595285 -99188268 + L2 LINE L2 3077 3272 0 2308 206 40 6 chr11 51595367 51595911 -99187642 - L1PA12 LINE L1 -7018 563 1 355 335 128 0 chr11 51596731 51596895 -99186658 + MIR SINE MIR 2 186 -76 2724 40 0 0 chr11 51597160 51597488 -99186065 - L1PA4 LINE L1 0 6155 5828 1999 123 7 7 chr11 51599046 51599331 -99184222 + AluSc SINE Alu 1 285 -24 207 259 27 18 chr11 51599574 51599686 -99183867 + (TAA)n Simple_repeat Simple_repeat 2 114 0 376 302 8 32 chr11 51599738 51599864 -99183689 - MIR SINE MIR -83 179 57 2261 100 0 0 chr11 51600227 51600528 -99183025 + AluY SINE Alu 1 301 -10 1415 73 0 0 chr11 51600528 51600705 -99182848 + AluY SINE Alu 133 309 -2 405 308 44 39 chr11 51600755 51600937 -99182616 + MIR SINE MIR 51 233 -29 193 311 57 19 chr11 51601265 51601371 -99182182 + MIR SINE MIR 79 188 -74 270 107 36 18 chr11 51601630 51601686 -99181867 + L1MA10 LINE L1 6265 6321 -13 34 0 0 0 chr11 51602356 51602390 -99181163 + AT_rich Low_complexity Low_complexity 1 34 0 241 248 89 0 chr11 51602390 51602491 -99181062 - L1MA9 LINE L1 -22 6290 6181 1353 165 11 30 chr11 51602493 51602760 -99180793 - L1MA9 LINE L1 -230 6082 5821 2262 216 87 51 chr11 51602773 51603751 -99179802 - L1M4 LINE L1 -1099 5047 4035 303 251 48 71 chr11 51603823 51604070 -99179483 - L1M4 LINE L1 -2877 3269 3033 2018 111 32 4 chr11 51604070 51604350 -99179203 - AluSg SINE Alu -22 288 1 303 251 48 71 chr11 51604350 51604481 -99179072 - L1M4 LINE L1 -3113 3033 2900 1115 212 87 3 chr11 51604523 51604627 -99178926 - L1MB5 LINE L1 -42 6132 6029 2322 189 39 13 chr11 51604627 51605462 -99178091 - L1MC4 LINE L1 -373 5801 5128 398 217 0 0 chr11 51605632 51605737 -99177816 - L1MC4 LINE L1 -1583 4563 4459 751 137 16 0 chr11 51605768 51605892 -99177661 + L1PA7 LINE L1 5475 5600 -566 1384 150 8 8 chr11 51605893 51606139 -99177414 - L1PB4 LINE L1 0 6859 6614 1690 90 8 0 chr11 51606142 51606376 -99177177 + L1PA7 LINE L1 5918 6153 -1 9722 203 44 20 chr11 51606392 51606537 -99177016 - L1PB4 LINE L1 -216 6643 6503 228 67 0 0 chr11 51606537 51606567 -99176986 + (TG)n Simple_repeat Simple_repeat 2 31 0 9722 203 44 20 chr11 51606567 51609757 -99173796 - L1PB4 LINE L1 -356 6503 3232 28 29 0 0 chr11 51609789 51609824 -99173729 + AT_rich Low_complexity Low_complexity 1 35 0 1387 98 0 0 chr11 51609850 51610034 -99173519 - AluY SINE Alu -10 301 118 761 139 0 0 chr11 51610975 51611090 -99172463 - FRAM SINE Alu -19 157 43 207 0 0 0 chr11 51611100 51611123 -99172430 + (TA)n Simple_repeat Simple_repeat 1 23 0 476 33 0 0 chr11 51611123 51611184 -99172369 - L1PA6 LINE L1 -2 6152 6092 5632 37 0 1 chr11 51611185 51612362 -99171191 + L1PA4 LINE L1 4785 5959 -196 996 97 52 0 chr11 51612366 51612500 -99171053 - AluY SINE Alu -170 141 1 24 32 0 0 chr11 51612511 51612542 -99171011 + AT_rich Low_complexity Low_complexity 1 31 0 32675 106 8 30 chr11 51612599 51612845 -99170708 - L1PA7 LINE L1 -2 6152 5902 3517 118 6 4 chr11 51612845 51613355 -99170198 - MER9 LTR ERVK 0 511 1 32675 106 8 30 chr11 51613355 51619388 -99164165 - L1PA7 LINE L1 -252 5902 22 1085 237 17 36 chr11 51619398 51619702 -99163851 - L1PB4 LINE L1 -3634 3215 2924 2044 154 0 0 chr11 51619702 51619994 -99163559 - AluSx SINE Alu -20 292 1 1085 237 17 36 chr11 51619994 51620186 -99163367 - L1PB4 LINE L1 -3925 2924 2730 2218 170 68 0 chr11 51620197 51620597 -99162956 - MSTA LTR MaLR 0 428 2 3808 172 133 10 chr11 51620598 51621389 -99162164 - MSTA-int LTR MaLR 0 1651 764 568 261 51 35 chr11 51621387 51621751 -99161802 - L1PB4 LINE L1 -5021 1828 1336 * 418 239 0 0 chr11 51621737 51621829 -99161724 - L1PB4 LINE L1 -5286 1563 1472 * 251 291 141 9 chr11 51621829 51622049 -99161504 - L1PB4 LINE L1 -5286 1563 1315 1674 279 180 26 chr11 51622547 51623368 -99160185 - L1PB4 LINE L1 -5893 957 10 1436 243 38 38 chr11 51623416 51623843 -99159710 - L1M4 LINE L1 -1868 4278 3849 1695 164 17 20 chr11 51623843 51624136 -99159417 - AluJo SINE Alu -20 292 1 1436 243 38 38 chr11 51624136 51624314 -99159239 - L1M4 LINE L1 -2296 3850 3673 791 117 0 0 chr11 51624530 51624658 -99158895 + L1MA5A LINE L1 6164 6291 -6 357 204 70 129 chr11 51624679 51624865 -99158688 - L1ME LINE L1 -691 5430 5256 797 294 58 20 chr11 51624979 51625632 -99157921 - L1ME LINE L1 -2775 3371 2694 851 224 136 13 chr11 51625874 51626102 -99157451 - ERVL LTR ERVL -4846 918 663 532 271 122 63 chr11 51626246 51626671 -99156882 - LTR16A1 LTR ERVL 0 457 8 272 335 37 31 chr11 51626697 51626888 -99156665 + L2 LINE L2 2576 2767 -547 241 247 94 24 chr11 51626953 51627038 -99156515 + L2 LINE L2 3223 3313 0 252 347 64 69 chr11 51627084 51627193 -99156360 + L2 LINE L2 2915 3023 -249 2269 125 0 0 chr11 51627193 51627496 -99156057 - AluSx SINE Alu -9 303 1 252 347 64 69 chr11 51627496 51627746 -99155807 + L2 LINE L2 3023 3272 0 1946 123 56 0 chr11 51627827 51628111 -99155442 + AluSc SINE Alu 1 300 -9 300 213 75 0 chr11 51628981 51629061 -99154492 + MIR SINE MIR 119 204 -58 466 294 76 30 chr11 51631152 51631349 -99152204 - MIR SINE MIR 0 262 57 305 406 47 5 chr11 51631702 51631894 -99151659 + MIR SINE MIR 7 206 -56 219 274 0 63 chr11 51632277 51632372 -99151181 + MIR SINE MIR 96 184 -78 3999 192 46 17 chr11 51633300 51634755 -99148798 - L1MA9 LINE L1 -4 7268 5779 2133 252 68 39 chr11 51634778 51636731 -99146822 - L1MA9 LINE L1 -4171 2936 934 816 256 23 5 chr11 51636755 51637042 -99146511 - L1M3c LINE L1 -5845 1192 42 2394 75 0 3 chr11 51637053 51637346 -99146207 - AluY SINE Alu -19 292 1 1610 219 31 4 chr11 51637346 51637797 -99145756 - L1M4 LINE L1 -814 5332 4870 493 198 38 0 chr11 51637873 51637979 -99145574 - MLT1A1 LTR MaLR 0 365 256 3275 54 0 0 chr11 51637984 51638389 -99145164 + L1PA6 LINE L1 5744 6148 -6 429 352 34 11 chr11 51638544 51638723 -99144830 - MIR SINE MIR -75 187 5 718 296 115 35 chr11 51639420 51639819 -99143734 + L2 LINE L2 2825 3255 -58 331 324 35 0 chr11 51639988 51640133 -99143420 - LTR67 LTR ERVL 0 557 408 1612 174 82 84 chr11 51640505 51641005 -99142548 - L1MA9 LINE L1 -38 6274 5776 341 221 0 0 chr11 51641025 51641102 -99142451 + L1MA9 LINE L1 6162 6238 -74 259 152 9 86 chr11 51641113 51641218 -99142335 + (TATAA)n Simple_repeat Simple_repeat 5 101 0 3390 185 15 48 chr11 51641249 51642176 -99141377 - L1MA9 LINE L1 -544 5768 4812 2162 118 3 3 chr11 51642176 51642482 -99141071 + AluSx SINE Alu 1 306 -6 3390 185 15 48 chr11 51642482 51642604 -99140949 - L1MA9 LINE L1 -1500 4812 4688 1698 190 11 0 chr11 51642604 51642927 -99140626 - AluSx SINE Alu 0 326 1 3390 185 15 48 chr11 51642927 51643180 -99140373 - L1MA9 LINE L1 -1624 4688 4517 354 227 53 0 chr11 51643190 51643265 -99140288 + 5S rRNA rRNA 1 79 -42 391 291 121 34 chr11 51643280 51643486 -99140067 - MIR SINE MIR -6 256 33 3823 175 33 25 chr11 51643654 51643963 -99139590 - L1MC1 LINE L1 -1 6612 6307 3284 76 0 2 chr11 51643963 51644410 -99139143 + L1PA8 LINE L1 5725 6170 -2 3823 175 33 25 chr11 51644410 51644867 -99138686 - L1MC1 LINE L1 -306 6307 5840 4189 199 58 70 chr11 51644882 51645198 -99138355 - L1MC1 LINE L1 -1349 5077 4759 2172 108 3 13 chr11 51645198 51645514 -99138039 - AluSp SINE Alu 0 313 1 4189 199 58 70 chr11 51645514 51646496 -99137057 - L1MC1 LINE L1 -1667 4759 3794 901 175 6 6 chr11 51646508 51646668 -99136885 + MLT1A1 LTR MaLR 1 160 -205 756 200 32 13 chr11 51646669 51646824 -99136729 - L1MC1 LINE L1 -5825 601 444 1486 185 19 88 chr11 51646952 51647384 -99136169 - L1MC1 LINE L1 -5995 431 30 185 426 9 9 chr11 51647416 51647531 -99136022 + L2 LINE L2 2768 2882 -432 262 313 27 94 chr11 51647683 51647907 -99135646 + L2 LINE L2 3105 3313 0 387 333 95 60 chr11 51649514 51650115 -99133438 - L2 LINE L2 -475 2839 2218 1334 251 18 70 chr11 51650240 51650638 -99132915 + MLT1B LTR MaLR 14 390 0 1679 199 11 6 chr11 51650640 51651002 -99132551 + MLT1B-int LTR MaLR 3 366 -1005 751 219 0 13 chr11 51702047 51702198 -99081355 - AluJb SINE Alu -44 268 120 7000 54 11 0 chr11 51702209 51703221 -99080332 - L1PA4 LINE L1 -11 6144 5129 5854 81 1 0 chr11 51703321 51704149 -99079404 + L1PA4 LINE L1 1348 2176 -3970 * 21020 54 8 0 chr11 51704146 51707572 -99075981 + L1PA4 LINE L1 2515 6153 -2 13349 36 2 1 chr11 51707962 51709669 -99073884 + L1P LINE L1 3505 5214 -932 1130 148 2 1 chr11 51709669 51714386 -99069167 - ALR/Alpha Satellite centromeric 0 4721 1 1113 135 3 1 chr11 51714397 51715681 -99067872 - ALR/Alpha Satellite centromeric 0 1286 1 1185 152 7 2 chr11 51715693 51717954 -99065599 - ALR/Alpha Satellite centromeric 0 2271 1 6960 59 0 1 chr11 51717955 51719536 -99064017 - L1PA4 LINE L1 -2 6153 4574 1130 138 5 1 chr11 51719636 51724046 -99059507 + ALR/Alpha Satellite centromeric 1 4430 0 34740 74 9 2 chr11 51724046 51729786 -99053767 - L1PA5 LINE L1 -4 6150 373 1001 176 4 2 chr11 51729787 51730961 -99052592 + ALR/Alpha Satellite centromeric 1 1176 -40 1379 93 9 0 chr11 51731061 51731287 -99052266 - L1P LINE L1 -2767 3379 3152 6841 61 1 3 chr11 51731288 51732806 -99050747 + L1PA4 LINE L1 4650 6165 0 1193 136 3 0 chr11 51732819 51734377 -99049176 + ALR/Alpha Satellite centromeric 1 1562 0 30737 94 7 0 chr11 51734380 51738891 -99044662 + L1P LINE L1 11 4550 -1596 1262 132 4 0 chr11 51739037 51747688 -99035865 + ALR/Alpha Satellite centromeric 1 8679 -15 1022 139 6 0 chr11 51747788 51748233 -99035320 + ALR/Alpha Satellite centromeric 1 447 -3 1166 148 4 3 chr11 51748244 51754557 -99028996 + ALR/Alpha Satellite centromeric 1 6317 -1 1223 143 9 1 chr11 51754600 51757527 -99026026 + ALR/Alpha Satellite centromeric 1 2952 0 23 0 0 0 chr11 51757527 51757550 -99026003 + AT_rich Low_complexity Low_complexity 1 23 0 1177 152 4 2 chr11 51757561 51758252 -99025301 + ALR/Alpha Satellite centromeric 1 690 -3577 443 35 0 0 chr11 51758252 51758310 -99025243 + L1PA4 LINE L1 6098 6155 0 1177 152 4 2 chr11 51758310 51761797 -99021756 + ALR/Alpha Satellite centromeric 690 4240 -27 1308 145 4 2 chr11 51761899 51781197 -99002356 + ALR/Alpha Satellite centromeric 1 19332 -7 4687 79 2 0 chr11 51781297 51781904 -99001649 - L1P LINE L1 -5538 608 1 1081 168 3 1 chr11 51781905 51783394 -99000159 - ALR/Alpha Satellite centromeric 0 1492 1 1089 167 5 2 chr11 51783494 51791810 -98991743 - ALR/Alpha Satellite centromeric 0 8340 1 1071 156 2 1 chr11 51791825 51792537 -98991016 - ALR/Alpha Satellite centromeric 0 712 1 1039 151 16 1 chr11 51792640 51793729 -98989824 - ALR/Alpha Satellite centromeric 0 1105 1 997 191 2 0 chr11 51793743 51794496 -98989057 - ALR/Alpha Satellite centromeric 0 754 1 1151 169 3 2 chr11 51794509 51800482 -98983071 - ALR/Alpha Satellite centromeric 0 5978 1 1254 147 5 1 chr11 51800493 51808772 -98974781 - ALR/Alpha Satellite centromeric 0 8312 1 9198 118 4 0 chr11 51808873 51810204 -98973349 - L1P LINE L1 -4810 1336 1 1100 163 3 1 chr11 51810208 51811745 -98971808 + ALR/Alpha Satellite centromeric 1 1539 -49 28623 37 1 0 chr11 51811745 51815346 -98968207 + L1P1 LINE L1 1872 5473 -682 6371 27 1 0 chr11 51815337 51816083 -98967470 + L1PA2 LINE L1 5405 6151 -4 * 1090 159 5 2 chr11 51816083 51820687 -98962866 + ALR/Alpha Satellite centromeric 1 4617 -13 30668 59 25 0 chr11 51820699 51825510 -98958043 - L1PA4 LINE L1 -3 6152 1225 1062 169 8 3 chr11 51825611 51828525 -98955028 - ALR/Alpha Satellite centromeric 0 2929 1 1319 117 2 2 chr11 51828537 51845999 -98937554 - ALR/Alpha Satellite centromeric 0 17465 1 1226 124 7 1 chr11 51846102 51848409 -98935144 + ALR/Alpha Satellite centromeric 1 2320 -38 1214 122 2 0 chr11 51848509 51852087 -98931466 + ALR/Alpha Satellite centromeric 1 3586 -58 272 335 100 62 chr11 51852909 51853380 -98930173 - L2 LINE L2 -18 3295 2807 281 286 14 0 chr11 51853888 51853958 -98929595 + FRAM/FAM SINE Alu 9 79 -87 1641 113 4 0 chr11 51854327 51854556 -98928997 - AluSp SINE Alu -28 285 56 27 103 0 0 chr11 51855124 51855221 -98928332 + AT_rich Low_complexity Low_complexity 1 97 0 1315 113 2 0 chr11 51855581 51860801 -98922752 - ALR/Alpha Satellite centromeric -1 5229 1 1250 112 1 1 chr11 51860907 51866216 -98917337 + ALR/Alpha Satellite centromeric 1 5691 -83 3223 29 0 0 chr11 51866216 51866596 -98916957 - L1PA2 LINE L1 -6 6149 5770 23 0 0 0 chr11 51866601 51866624 -98916929 + AT_rich Low_complexity Low_complexity 1 23 0 7610 16 1 0 chr11 51866624 51868234 -98915319 - L1HS LINE L1 -2 6153 4543 1290 115 1 1 chr11 51868335 51876932 -98906621 + ALR/Alpha Satellite centromeric 1 8604 -26 1774 40 0 0 chr11 51877062 51877289 -98906264 - L1PA3 LINE L1 -183 5972 5746 * 3805 37 0 0 chr11 51877287 51877769 -98905784 + L1PA3 LINE L1 5271 5752 -403 1281 117 2 1 chr11 51877769 51886479 -98897074 - ALR/Alpha Satellite centromeric 0 8722 1 3691 38 0 0 chr11 51886479 51886950 -98896603 - L1P1 LINE L1 -1493 4653 4183 * 5757 27 8 0 chr11 51886947 51888070 -98895483 + L1P1 LINE L1 4648 5781 -374 * 31457 43 31 2 chr11 51888068 51892202 -98891351 + L1P LINE L1 1 4256 -1890 8300 88 3 5 chr11 51892302 51893580 -98889973 - L1P LINE L1 -4865 1281 7 998 167 5 4 chr11 51893580 51895291 -98888262 - ALR/Alpha Satellite centromeric 0 1712 1 22578 72 8 9 chr11 51895311 51898296 -98885257 - L1P LINE L1 -3160 2986 4 895 175 6 0 chr11 51898296 51898462 -98885091 - ALR/Alpha Satellite centromeric 0 172 6 980 168 0 0 chr11 51898476 51898929 -98884624 - ALR/Alpha Satellite centromeric -2 453 1 1037 168 4 6 chr11 51899036 51904552 -98879001 - ALR/Alpha Satellite centromeric -1 5504 1 1163 162 5 2 chr11 51904658 51914077 -98869476 + ALR/Alpha Satellite centromeric 1 9442 -74 1134 168 4 3 chr11 51914177 51922212 -98861341 - ALR/Alpha Satellite centromeric -4 8042 1 4825 32 0 0 chr11 51922247 51922817 -98860736 - L1PA2 LINE L1 -7 6148 5579 11989 52 3 1 chr11 51922817 51924330 -98859223 + L1P LINE L1 3378 4893 -1253 1013 182 11 1 chr11 51924330 51925365 -98858188 + ALR/Alpha Satellite centromeric 1 1045 -76 17273 50 2 33 chr11 51925366 51927734 -98855819 + L1P LINE L1 2359 4653 -1493 1324 93 2 0 chr11 51927834 51928674 -98854879 - ALR/Alpha Satellite centromeric 0 841 1 4565 40 3 0 chr11 51928674 51929270 -98854283 - L1PA3 LINE L1 -2853 3293 2696 16696 45 5 2 chr11 51929271 51932147 -98851406 + L1PA3 LINE L1 3291 6171 0 1355 114 3 3 chr11 51932149 51943219 -98840334 - ALR/Alpha Satellite centromeric 0 11070 1 566 294 0 0 chr11 51943797 51943923 -98839630 + FRAM SINE Alu 1 118 -58 1145 148 6 1 chr11 51945186 51948048 -98835505 - ALR/Alpha Satellite centromeric 0 2875 1 34701 63 6 29 chr11 51948048 51952808 -98830745 - L1P LINE L1 -1491 4655 9 1223 131 2 1 chr11 51952825 51954896 -98828657 + ALR/Alpha Satellite centromeric 1 2073 -4 2228 174 105 10 chr11 51954996 51955995 -98827558 - SATR1 Satellite Satellite -1 1093 1 21 71 0 0 chr11 51955995 51956037 -98827516 + AT_rich Low_complexity Low_complexity 1 42 0 411 217 6 42 chr11 51956080 51956246 -98827307 + (TTA)n Simple_repeat Simple_repeat 2 161 0 358 115 85 0 chr11 51956784 51956949 -98826604 + (TA)n Simple_repeat Simple_repeat 2 180 0 205 171 0 0 chr11 51957412 51957447 -98826106 + (CATATA)n Simple_repeat Simple_repeat 1 35 0 25 83 0 0 chr11 51959920 51959980 -98823573 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr11 51960990 51961011 -98822542 + AT_rich Low_complexity Low_complexity 1 21 0 341 56 28 28 chr11 51961175 51961246 -98822307 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 206 426 22 0 chr11 51962877 51963013 -98820540 + L2 LINE L2 2850 2988 -325 232 174 14 14 chr11 51963072 51963141 -98820412 + (TA)n Simple_repeat Simple_repeat 2 70 0 193 269 18 102 chr11 51963218 51963385 -98820168 + L2 LINE L2 3004 3156 -157 945 220 40 13 chr11 51965705 51965932 -98817621 + MLT2B3 LTR ERVL 8 240 -314 370 320 40 0 chr11 51965921 51966046 -98817507 + MLT2B3 LTR ERVL 379 508 -46 * 1004 203 87 0 chr11 51966056 51966263 -98817290 - Tigger3(Golem) DNA MER2_type 0 3036 2812 339 25 0 0 chr11 51966264 51966304 -98817249 + (TA)n Simple_repeat Simple_repeat 1 40 0 329 67 22 0 chr11 51966311 51966356 -98817197 + MLT2C1 LTR ERVL 352 397 0 528 302 0 0 chr11 51967539 51967665 -98815888 - FRAM SINE Alu -58 118 1 317 312 231 7 chr11 51968324 51968606 -98814947 - L1M4 LINE L1 -892 5254 4910 25 31 0 0 chr11 51968919 51968951 -98814602 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr11 51969687 51969709 -98813844 + AT_rich Low_complexity Low_complexity 1 22 0 249 33 0 0 chr11 51971549 51971579 -98811974 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 294 405 26 0 chr11 51973159 51973312 -98810241 + L2 LINE L2 2808 2964 -349 204 158 0 0 chr11 51973319 51973357 -98810196 + (CA)n Simple_repeat Simple_repeat 1 38 0 330 302 57 91 chr11 51973385 51973716 -98809837 + L2 LINE L2 2979 3298 -15 571 146 0 0 chr11 51975648 51975737 -98807816 + L1PA8 LINE L1 6075 6163 -9 1074 212 21 21 chr11 51975979 51976220 -98807333 + MLT2B3 LTR ERVL 1 241 -313 511 306 0 0 chr11 51976216 51976350 -98807203 + MLT2B3 LTR ERVL 375 508 -46 * 1752 152 31 19 chr11 51976357 51976409 -98807144 - MER7A DNA MER2_type -2693 345 295 1835 157 0 38 chr11 51976409 51976722 -98806831 - AluSx SINE Alu -11 301 1 1752 152 31 19 chr11 51976722 51976991 -98806562 - MER7A DNA MER2_type -2743 295 22 267 203 40 14 chr11 51976992 51977066 -98806487 + MLT2B1 LTR ERVL 445 520 0 218 204 0 23 chr11 51977155 51977199 -98806354 - L3b LINE CR1 -11 1572 1530 1259 201 8 19 chr11 51978264 51978523 -98805030 - AluJo SINE Alu -46 266 11 351 0 0 0 chr11 51979096 51979135 -98804418 + (TA)n Simple_repeat Simple_repeat 1 39 0 2676 207 104 25 chr11 51979180 51979870 -98803683 + Tigger7 DNA MER2_type 24 768 -1719 567 135 21 10 chr11 51979872 51979968 -98803585 + Tigger7 DNA MER2_type 2118 2214 -273 202 250 21 0 chr11 51980210 51980258 -98803295 + L2 LINE L2 2601 2649 -665 1842 102 4 4 chr11 51980710 51980964 -98802589 + AluSq SINE Alu 1 254 -59 329 146 0 0 chr11 51981066 51981121 -98802432 + AluSq SINE Alu 245 299 -1 1104 236 4 12 chr11 51981732 51981974 -98801579 - AluJo SINE Alu -16 296 57 373 183 0 159 chr11 51983123 51983158 -98800395 + MER46A DNA MER2_type 1 40 -196 380 102 0 0 chr11 51983158 51983217 -98800336 + L1MA1 LINE L1 6238 6296 -6 373 183 0 159 chr11 51983217 51983307 -98800246 + MER46A DNA MER2_type 40 106 -130 601 191 0 0 chr11 51983374 51983484 -98800069 + MER46A DNA MER2_type 126 235 -1 2291 175 150 17 chr11 51984905 51985437 -98798116 + LTR26 LTR ERV1 1 603 0 469 262 18 30 chr11 51985437 51985600 -98797953 + MER115 DNA AcHobo 500 660 -33 2704 32 0 6 chr11 51985904 51986217 -98797336 - AluY SINE Alu 0 311 1 613 284 93 35 chr11 51986600 51987085 -98796468 + L1MEc LINE L1 584 1096 -5300 244 48 24 24 chr11 51987170 51987212 -98796341 + MADE1 DNA Mariner 1 42 -38 1861 146 16 3 chr11 51987212 51987387 -98796166 - AluSx SINE Alu 0 312 130 3366 13 0 0 chr11 51987387 51987773 -98795780 + L1PA2 LINE L1 5769 6154 -1 1861 146 16 3 chr11 51987773 51987905 -98795648 - AluSx SINE Alu -182 130 1 258 133 0 0 chr11 51987910 51987955 -98795598 + MADE1 DNA Mariner 36 80 0 229 285 6 19 chr11 51987977 51988086 -98795467 + GA-rich Low_complexity Low_complexity 4 156 0 254 266 28 85 chr11 51988093 51988270 -98795283 + L1MEc LINE L1 1515 1681 -4715 375 60 0 0 chr11 51988285 51988335 -98795218 + (CA)n Simple_repeat Simple_repeat 2 51 0 21 0 0 0 chr11 51989007 51989028 -98794525 + AT_rich Low_complexity Low_complexity 1 21 0 1277 138 54 19 chr11 51989474 51989735 -98793818 - L1MA5A LINE L1 0 6297 6028 25 0 0 0 chr11 51989763 51989788 -98793765 + AT_rich Low_complexity Low_complexity 1 25 0 395 176 11 11 chr11 51989792 51989883 -98793670 - L1MA5A LINE L1 -275 6022 5932 4519 81 22 21 chr11 51990491 51990826 -98792727 - L1PA7 LINE L1 0 6154 5821 2081 104 7 26 chr11 51990826 51991134 -98792419 - AluY SINE Alu -9 302 1 4519 81 22 21 chr11 51991134 51991576 -98791977 - L1PA7 LINE L1 -333 5821 5304 1392 162 77 15 chr11 51992654 51992950 -98790603 + AluSx SINE Alu 1 313 0 429 280 15 40 chr11 51993201 51993401 -98790152 + L1MB7 LINE L1 5897 6091 -93 1910 117 55 7 chr11 51994493 51994784 -98788769 - AluSx SINE Alu -7 305 1 431 147 0 0 chr11 51996164 51996232 -98787321 + Tigger2 DNA MER2_type 2 69 -2649 * 1992 193 45 32 chr11 51996216 51996656 -98786897 + Tigger2 DNA MER2_type 2267 2712 -6 201 74 0 0 chr11 51999663 51999690 -98783863 + (TC)n Simple_repeat Simple_repeat 2 28 0 2527 225 5 27 chr11 52000334 52000960 -98782593 + L1 LINE L1 4737 5348 -798 261 325 12 0 chr11 52001136 52001219 -98782334 + 7SLRNA srpRNA srpRNA 1 84 -236 286 133 22 0 chr11 52001362 52001407 -98782146 - MLT2C1 LTR ERVL 0 397 352 * 1031 198 81 18 chr11 52001401 52001414 -98782139 + Tigger3(Golem) DNA MER2_type 2792 2803 -226 573 15 0 0 chr11 52001414 52001480 -98782073 + (TA)n Simple_repeat Simple_repeat 1 66 0 1031 198 81 18 chr11 52001480 52001688 -98781865 + Tigger3(Golem) DNA MER2_type 2803 3027 -2 361 336 37 0 chr11 52001698 52001832 -98781721 - MLT2B3 LTR ERVL -46 508 370 * 1097 196 39 13 chr11 52001812 52002042 -98781511 - MLT2B3 LTR ERVL -314 240 5 216 342 58 64 chr11 52004222 52004535 -98779018 - L2 LINE L2 0 3313 3003 469 246 0 29 chr11 52004572 52004747 -98778806 + (TA)n Simple_repeat Simple_repeat 2 171 0 219 337 46 17 chr11 52004747 52004867 -98778686 - L2 LINE L2 -309 2963 2851 22 0 0 0 chr11 52006256 52006278 -98777275 + AT_rich Low_complexity Low_complexity 1 22 0 308 103 17 0 chr11 52006510 52006568 -98776985 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 21 0 0 0 chr11 52006731 52006752 -98776801 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr11 52008413 52008436 -98775117 + AT_rich Low_complexity Low_complexity 1 23 0 261 242 0 0 chr11 52009526 52009592 -98773961 + L1ME3 LINE L1 4915 4980 -1166 419 283 110 16 chr11 52009656 52010497 -98773056 + L1ME3 LINE L1 5083 6009 -153 210 71 0 0 chr11 52010581 52010609 -98772944 + (TA)n Simple_repeat Simple_repeat 2 29 0 25 31 0 0 chr11 52010675 52010707 -98772846 + AT_rich Low_complexity Low_complexity 1 32 0 3085 74 5 8 chr11 52010729 52011122 -98772431 - L1PA7 LINE L1 -3 6151 5760 265 319 27 69 chr11 52011324 52011512 -98772041 + L1MCc LINE L1 823 1002 -5421 647 286 87 39 chr11 52011551 52011883 -98771670 + L1MCc LINE L1 1079 1426 -4997 8233 60 8 212 chr11 52011885 52013563 -98769990 - SVA Other Other 0 1386 52 435 19 0 0 chr11 52013563 52013615 -98769938 + (GGGAGA)n Simple_repeat Simple_repeat 1 52 0 255 243 69 81 chr11 52013776 52013949 -98769604 - L1M4c LINE L1 -4788 1596 1426 211 196 39 0 chr11 52014444 52014495 -98769058 + (TA)n Simple_repeat Simple_repeat 2 54 0 718 252 0 26 chr11 52014635 52014786 -98768767 + AluJo SINE Alu 127 273 -39 349 129 71 7 chr11 52014786 52014926 -98768627 + (TA)n Simple_repeat Simple_repeat 1 149 0 497 167 10 0 chr11 52016398 52016500 -98767053 + T-rich Low_complexity Low_complexity 3 105 0 664 208 125 0 chr11 52016518 52016662 -98766891 - AluSg/x SINE Alu -14 296 135 1149 35 35 0 chr11 52018899 52019070 -98764483 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 218 105 26 0 chr11 52019080 52019118 -98764435 + CT-rich Low_complexity Low_complexity 2 40 0 1636 138 8 27 chr11 52019129 52019389 -98764164 - AluSq SINE Alu -58 255 1 2103 95 7 0 chr11 52025225 52025508 -98758045 - AluSp SINE Alu -28 285 1 2434 192 153 33 chr11 52025989 52028669 -98754884 - SATR1 Satellite Satellite -1 3001 1 1318 179 77 0 chr11 52030109 52030355 -98753198 + AluSg SINE Alu 6 270 -40 935 73 15 0 chr11 52030355 52030491 -98753062 + (GAAA)n Simple_repeat Simple_repeat 3 140 0 530 118 66 0 chr11 52031974 52032126 -98751427 + (TA)n Simple_repeat Simple_repeat 1 162 0 685 285 0 0 chr11 52032138 52032275 -98751278 - FRAM SINE Alu -38 138 2 1334 17 23 0 chr11 52034275 52034448 -98749105 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 206 136 23 0 chr11 52034450 52034494 -98749059 + CT-rich Low_complexity Low_complexity 3 47 0 1563 171 0 25 chr11 52034496 52034776 -98748777 - AluSx SINE Alu -39 273 1 2147 95 3 0 chr11 52040605 52040889 -98742664 - AluSp SINE Alu -28 285 1 435 243 5 129 chr11 52042337 52042547 -98741006 + MER5A DNA MER1_type 6 189 0 23 54 0 0 chr11 52043322 52043359 -98740194 + AT_rich Low_complexity Low_complexity 1 37 0 786 156 39 0 chr11 52043676 52043804 -98739749 - AluSq SINE Alu -157 156 24 1370 209 14 14 chr11 52044371 52044658 -98738895 - AluJo SINE Alu -25 287 1 970 279 80 11 chr11 52044814 52045191 -98738362 - L1MA9 LINE L1 -38 6274 5872 235 349 80 19 chr11 52046364 52046576 -98736977 + MLT1J LTR MaLR 111 335 -176 357 75 0 0 chr11 52047262 52047315 -98736238 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 22 0 0 0 chr11 52049141 52049163 -98734390 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr11 52049900 52049932 -98733621 + AT_rich Low_complexity Low_complexity 1 32 0 1057 152 14 0 chr11 52050200 52050758 -98732795 + ALR/Alpha Satellite centromeric 1 565 -23 3645 90 4 8 chr11 52050758 52051247 -98732306 - SVA Other Other -2 1384 898 1203 147 8 2 chr11 52051247 52056326 -98727227 + ALR/Alpha Satellite centromeric 1 5107 -35 15710 33 3 2 chr11 52056326 52058581 -98724972 + L1P1 LINE L1 3477 5736 -419 11702 49 3 3 chr11 52108582 52110186 -98673367 + L1P LINE L1 1934 3537 -2609 7686 16 6 1 chr11 52112016 52113237 -98670316 + L1PA3 LINE L1 4930 6152 -3 566 247 107 11 chr11 52114289 52114467 -98669086 - MIR SINE MIR 0 262 68 25 0 0 0 chr11 52114990 52115015 -98668538 + AT_rich Low_complexity Low_complexity 1 25 0 285 252 84 25 chr11 52116642 52116761 -98666792 + L2 LINE L2 3142 3267 -5 1781 109 0 109 chr11 52116944 52117265 -98666288 + AluSc SINE Alu 3 288 -21 670 338 14 0 chr11 52117270 52117480 -98666073 - MIR SINE MIR -8 254 42 198 103 0 0 chr11 52118518 52118547 -98665006 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1226 119 0 0 chr11 52118783 52118951 -98664602 + AluSg/x SINE Alu 129 296 -16 2279 113 3 0 chr11 52119306 52119617 -98663936 - AluSx SINE Alu 0 312 1 621 258 53 29 chr11 52119754 52119998 -98663555 + MIR SINE MIR 1 250 -12 1311 186 100 7 chr11 52120031 52120300 -98663253 - AluJo SINE Alu -18 294 1 1347 207 36 76 chr11 52120394 52120844 -98662709 - MER101 LTR ERV1 -32 442 11 345 237 88 18 chr11 52121119 52121233 -98662320 - L2 LINE L2 0 3313 3192 180 317 0 0 chr11 52121351 52121392 -98662161 - L2 LINE L2 -20 3252 3212 230 318 0 59 chr11 52121453 52121538 -98662015 - MIR SINE MIR -176 86 7 1730 191 0 3 chr11 52121878 52122166 -98661387 - AluJb SINE Alu -17 295 9 3119 176 8 20 chr11 52122804 52123468 -98660085 - L1 LINE L1 -1189 4957 4302 426 173 13 0 chr11 52123575 52123650 -98659903 + MER5A DNA MER1_type 114 189 0 1404 185 16 14 chr11 52125048 52125524 -98658029 - L1P4 LINE L1 -700 5465 4990 1213 236 24 7 chr11 52125524 52125820 -98657733 - AluJb SINE Alu 0 312 12 5421 216 37 16 chr11 52125829 52127326 -98656227 - L1 LINE L1 -1140 5006 3479 8267 175 65 19 chr11 52127432 52129784 -98653769 + L1M2 LINE L1 3264 5707 -605 336 262 43 14 chr11 52130957 52131098 -98652455 + L1ME4a LINE L1 5738 5882 -239 236 307 151 42 chr11 52131758 52131950 -98651603 - MIR SINE MIR 0 262 50 708 218 26 0 chr11 52132289 52132445 -98651108 - MLT1A2 LTR MaLR 0 374 215 2116 69 14 0 chr11 52132445 52132735 -98650818 + THE1A-int LTR MaLR 1287 1580 0 2047 141 29 6 chr11 52132735 52133082 -98650471 + THE1A LTR MaLR 1 355 0 665 168 41 77 chr11 52133092 52133288 -98650265 - MLT1A2 LTR MaLR -164 201 13 222 316 45 51 chr11 52133299 52133476 -98650077 - L2 LINE L2 -704 2610 2435 254 268 12 12 chr11 52134147 52134229 -98649324 + MLT1I LTR MaLR 322 403 -6 1095 141 6 0 chr11 52135719 52135889 -98647664 - AluSg/x SINE Alu 0 312 142 2055 75 16 42 chr11 52135899 52136207 -98647346 - AluY SINE Alu -9 302 3 23 33 0 0 chr11 52137383 52137413 -98646140 + AT_rich Low_complexity Low_complexity 1 30 0 719 332 77 47 chr11 52137479 52138275 -98645278 + L1M4 LINE L1 3190 4009 -2137 355 294 0 20 chr11 52138422 52138524 -98645029 - MIR3 SINE MIR -26 182 83 2128 136 3 0 chr11 52138993 52139302 -98644251 - AluSx SINE Alu -2 310 1 1362 165 57 0 chr11 52139682 52139995 -98643558 + Tigger4(Zombi) DNA MER2_type 1 2728 -3 324 371 22 17 chr11 52140008 52140186 -98643367 - MIR3 SINE MIR -15 193 15 217 167 24 0 chr11 52140314 52140356 -98643197 + MIR SINE MIR 108 150 -112 220 277 46 0 chr11 52140436 52140501 -98643052 + MIR SINE MIR 81 148 -114 226 261 54 0 chr11 52140881 52140973 -98642580 + GA-rich Low_complexity Low_complexity 3 99 0 811 192 0 0 chr11 52141432 52141562 -98641991 - FRAM SINE Alu -38 138 9 186 244 81 105 chr11 52142229 52142315 -98641238 - L3b LINE CR1 -232 1351 1268 23 0 0 0 chr11 52142536 52142559 -98640994 + AT_rich Low_complexity Low_complexity 1 23 0 1428 213 59 0 chr11 52143433 52143706 -98639847 + AluSx SINE Alu 1 289 -23 414 174 46 64 chr11 52144254 52144363 -98639190 + MLT1I LTR MaLR 315 409 0 613 84 12 0 chr11 52144783 52144866 -98638687 - AluS SINE Alu -229 84 1 204 298 114 46 chr11 52144877 52145008 -98638545 - MIR SINE MIR -122 140 1 230 0 33 0 chr11 52145510 52145540 -98638013 + (TG)n Simple_repeat Simple_repeat 2 32 0 1892 168 31 43 chr11 52146211 52146601 -98636952 - LOR1b LTR ERV1 0 461 75 2113 123 7 10 chr11 52146601 52146910 -98636643 + AluSx SINE Alu 1 308 -4 1892 168 31 43 chr11 52146910 52146937 -98636616 - LOR1b LTR ERV1 -386 75 49 294 286 10 58 chr11 52149022 52149187 -98634366 + MIR3 SINE MIR 72 197 -11 3621 37 0 0 chr11 52149900 52150388 -98633165 - L1P LINE L1 -2681 3465 2978 10276 41 5 1 chr11 52150388 52151725 -98631828 + L1P LINE L1 3478 4820 -1326 2173 115 0 3 chr11 52151880 52152185 -98631368 - AluSx SINE Alu -8 304 1 2066 134 0 13 chr11 52152872 52153171 -98630382 + AluSx SINE Alu 1 295 -17 282 331 89 13 chr11 52153251 52153408 -98630145 + MIR SINE MIR 18 186 -76 1047 165 17 0 chr11 52153409 52153585 -98629968 - FRAM SINE Alu 0 176 1 232 225 180 22 chr11 52153848 52153937 -98629616 + MIR SINE MIR 150 252 -10 415 176 7 113 chr11 52154026 52154168 -98629385 + MLT1D LTR MaLR 1 87 -418 821 215 148 61 chr11 52154349 52154536 -98629017 - MLT1D LTR MaLR -131 374 205 2279 175 37 15 chr11 52154536 52154993 -98628560 - MLT1C LTR MaLR 0 467 1 821 215 148 61 chr11 52154993 52155149 -98628404 - MLT1D LTR MaLR -300 205 1 1158 328 81 31 chr11 52155326 52155461 -98628092 + L2 LINE L2 1933 2060 -1254 861 263 9 9 chr11 52155461 52155685 -98627868 + MER58A DNA MER1_type 1 224 0 1158 328 81 31 chr11 52155685 52156293 -98627260 + L2 LINE L2 2060 2713 -601 1434 207 7 58 chr11 52156293 52156703 -98626850 - L1 LINE L1 -1240 4906 4518 483 313 72 23 chr11 52156713 52156975 -98626578 + L2 LINE L2 2841 3115 -198 325 335 68 11 chr11 52157879 52158111 -98625442 - L1MC/D LINE L1 -659 5505 5371 359 219 48 48 chr11 52158312 52158458 -98625095 - L1 LINE L1 -1796 4350 4205 266 224 88 20 chr11 52158499 52158646 -98624907 - L1MDb LINE L1 -5059 1350 1194 23 0 0 0 chr11 52158672 52158695 -98624858 + AT_rich Low_complexity Low_complexity 1 23 0 765 215 18 0 chr11 52158735 52158898 -98624655 - FRAM SINE Alu 0 166 1 2217 117 3 0 chr11 52159424 52159724 -98623829 - AluSq SINE Alu -12 301 1 341 290 145 0 chr11 52160631 52160817 -98622736 + L3 LINE CR1 1214 1426 -151 339 308 112 80 chr11 52161272 52161867 -98621686 - L2 LINE L2 -213 3059 2396 330 307 38 99 chr11 52161871 52162083 -98621470 + MIR SINE MIR 31 229 -33 1950 202 46 6 chr11 52162086 52162566 -98620987 + MLT1D LTR MaLR 2 500 -5 740 86 17 26 chr11 52163204 52163321 -98620232 + AluSp/q SINE Alu 196 311 -2 206 146 229 0 chr11 52163342 52163390 -98620163 + MIR SINE MIR 89 147 -115 252 0 0 0 chr11 52164864 52164892 -98618661 + (A)n Simple_repeat Simple_repeat 1 28 0 809 179 8 0 chr11 52165216 52165350 -98618203 + AluJb SINE Alu 1 135 -177 1289 206 72 0 chr11 52165350 52165627 -98617926 + AluJo SINE Alu 1 297 -15 188 239 62 62 chr11 52165842 52165955 -98617598 + L2 LINE L2 2679 2791 -523 240 35 0 0 chr11 52166227 52166256 -98617297 + (TG)n Simple_repeat Simple_repeat 1 29 0 722 196 72 41 chr11 52167001 52167195 -98616358 + MLT1A1 LTR MaLR 5 204 -161 2117 116 0 0 chr11 52167201 52167519 -98616034 + AluSx SINE Alu 1 318 0 344 358 80 24 chr11 52167532 52167993 -98615560 - L2 LINE L2 -434 2880 2394 455 205 0 0 chr11 52168207 52168314 -98615239 + AluSg/x SINE Alu 205 311 0 739 201 39 0 chr11 52168318 52168472 -98615081 + MLT1A1 LTR MaLR 204 363 -2 405 0 0 0 chr11 52168473 52168518 -98615035 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 2237 118 0 3 chr11 52168628 52168932 -98614621 - AluSg SINE Alu -7 303 1 21 0 0 0 chr11 52169256 52169277 -98614276 + AT_rich Low_complexity Low_complexity 1 21 0 484 291 97 34 chr11 52169277 52169514 -98614039 - MIR SINE MIR -3 259 8 184 316 53 63 chr11 52170683 52170778 -98612775 + MIR SINE MIR 44 137 -71 2245 97 3 10 chr11 52171111 52171410 -98612143 + AluSg SINE Alu 1 297 -13 362 390 22 7 chr11 52171473 52171609 -98611944 + L3 LINE CR1 1427 1564 -13 244 211 26 26 chr11 52173130 52173244 -98610309 + CT-rich Low_complexity Low_complexity 3 116 0 29 28 0 0 chr11 52174104 52174140 -98609413 + AT_rich Low_complexity Low_complexity 1 36 0 2184 110 10 0 chr11 52174670 52174978 -98608575 - AluSq SINE Alu -2 311 1 24323 60 3 3 chr11 52176212 52179506 -98604047 + L1P LINE L1 2 3294 -2852 648 344 18 0 chr11 52179670 52179894 -98603659 - LTR16B LTR ERVL -236 228 1 1862 257 52 29 chr11 52180259 52180951 -98602602 + L1ME2 LINE L1 5447 6154 -10 428 247 107 20 chr11 52181827 52181977 -98601576 + MIR SINE MIR 28 190 -72 493 297 11 67 chr11 52182168 52182437 -98601116 + MER46C DNA MER2_type 73 326 -12 1006 179 85 23 chr11 52184260 52184613 -98598940 - Charlie2 DNA MER1_type 0 2862 2488 1241 281 50 10 chr11 52184620 52185019 -98598534 + LTR16A LTR ERVL 15 429 -21 1100 220 105 58 chr11 52185030 52185166 -98598387 - Charlie2 DNA MER1_type -369 2493 2365 2161 118 7 0 chr11 52185166 52185462 -98598091 + AluSx SINE Alu 1 298 -14 1100 220 105 58 chr11 52185462 52185934 -98597619 - Charlie2 DNA MER1_type -497 2365 1856 565 297 113 8 chr11 52185943 52186199 -98597354 - Charlie2 DNA MER1_type -2544 318 36 196 278 289 11 chr11 52186348 52186438 -98597115 - L2 LINE L2 -4 3309 3195 239 293 12 12 chr11 52186439 52186521 -98597032 - Tigger5 DNA MER2_type 0 2323 2242 * 409 197 0 0 chr11 52186511 52186587 -98596966 + Tigger5 DNA MER2_type 2242 2317 -6 335 188 29 0 chr11 52186589 52186658 -98596895 - Tigger5 DNA MER2_type -2244 79 9 632 217 133 0 chr11 52187468 52187634 -98595919 + MER5A DNA MER1_type 1 188 -1 361 103 0 0 chr11 52187753 52187811 -98595742 - AluY SINE Alu 0 300 243 24 67 0 0 chr11 52187814 52187859 -98595694 + AT_rich Low_complexity Low_complexity 1 45 0 1857 66 0 4 chr11 52188003 52188245 -98595308 - AluY SINE Alu -70 241 1 183 42 0 0 chr11 52188622 52188646 -98594907 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1676 125 0 8 chr11 52188648 52188888 -98594665 - AluSx SINE Alu -29 283 46 30 59 0 0 chr11 52189001 52189052 -98594501 + AT_rich Low_complexity Low_complexity 1 51 0 24 67 0 0 chr11 52189108 52189153 -98594400 + AT_rich Low_complexity Low_complexity 1 45 0 612 258 40 18 chr11 52189319 52189544 -98594009 + L1ME2 LINE L1 5934 6163 -1 24 32 0 0 chr11 52190451 52190482 -98593071 + AT_rich Low_complexity Low_complexity 1 31 0 1960 104 75 0 chr11 52190811 52191091 -98592462 + AluSg SINE Alu 1 301 -9 226 310 113 14 chr11 52191200 52191342 -98592211 + L1MEd LINE L1 509 664 -5455 24 0 0 0 chr11 52191690 52191714 -98591839 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr11 52191843 52191873 -98591680 + AT_rich Low_complexity Low_complexity 1 30 0 942 296 37 27 chr11 52191901 52192739 -98590814 + L1MEd LINE L1 2528 3373 -2756 2356 98 0 3 chr11 52192806 52193113 -98590440 + AluY SINE Alu 1 306 -5 181 244 0 22 chr11 52193116 52193161 -98590392 + L2 LINE L2 3182 3225 -88 * 664 286 92 18 chr11 52193143 52193370 -98590183 + MIR SINE MIR 19 262 0 183 80 0 0 chr11 52193396 52193421 -98590132 + (TTA)n Simple_repeat Simple_repeat 2 26 0 295 286 64 30 chr11 52193843 52194109 -98589444 + L1ME LINE L1 5574 5848 -273 388 214 174 79 chr11 52194473 52194621 -98588932 + MER58C DNA MER1_type 1 170 -2250 2109 115 3 7 chr11 52194621 52194909 -98588644 + AluSx SINE Alu 1 287 -25 388 214 174 79 chr11 52194909 52194938 -98588615 + MER58C DNA MER1_type 170 195 -20 13986 77 6 0 chr11 52195227 52197220 -98586333 + L1P LINE L1 3270 5273 -873 1875 152 0 7 chr11 52198584 52198896 -98584657 - AluSx SINE Alu 0 314 5 22484 112 12 12 chr11 52198939 52202657 -98580896 + L1P LINE L1 901 4619 -1527 404 299 0 0 chr11 52202661 52202758 -98580795 - MIR SINE MIR -146 116 20 2080 134 0 7 chr11 52202758 52203064 -98580489 + AluSx SINE Alu 1 304 -8 296 175 0 48 chr11 52203560 52203623 -98579930 - L2 LINE L2 -213 3059 3000 1582 207 3 0 chr11 52203688 52203983 -98579570 + AluJb SINE Alu 1 296 -16 260 305 67 0 chr11 52204277 52204382 -98579171 + L1ME4a LINE L1 5531 5642 -522 936 267 120 68 chr11 52204502 52205226 -98578327 + LTR41 LTR ERVL 5 766 -7 27 0 0 0 chr11 52205601 52205628 -98577925 + AT_rich Low_complexity Low_complexity 1 27 0 24 53 0 0 chr11 52206493 52206531 -98577022 + AT_rich Low_complexity Low_complexity 1 38 0 251 154 26 115 chr11 52206652 52206730 -98576823 - MIR SINE MIR -121 141 71 1555 189 0 17 chr11 52207017 52207314 -98576239 + AluJo SINE Alu 1 292 -20 31 26 0 0 chr11 52207578 52207616 -98575937 + AT_rich Low_complexity Low_complexity 1 38 0 281 261 62 11 chr11 52207639 52207815 -98575738 + L1ME4a LINE L1 5935 6119 -2 443 206 87 0 chr11 52208202 52208294 -98575259 + MER8 DNA MER2_type 23 122 -117 809 47 0 9 chr11 52208306 52208413 -98575140 - L1PA5 LINE L1 -1 6153 6048 966 60 0 0 chr11 52208413 52208546 -98575007 + L1PA5 LINE L1 5919 6051 -103 826 188 0 14 chr11 52209330 52209474 -98574079 - FRAM SINE Alu -13 163 22 392 197 0 0 chr11 52209539 52209615 -98573938 - Tigger2 DNA MER2_type -2642 76 1 185 229 57 0 chr11 52210046 52210081 -98573472 - L2 LINE L2 -94 3219 3183 489 282 55 17 chr11 52210289 52210470 -98573083 - MIR SINE MIR -10 252 65 246 32 0 0 chr11 52210788 52210819 -98572734 + (CA)n Simple_repeat Simple_repeat 1 31 0 623 312 98 55 chr11 52211275 52212060 -98571493 - L1ME4a LINE L1 -52 6069 5255 462 100 67 33 chr11 52213017 52213107 -98570446 + L1PA8 LINE L1 6078 6170 -2 231 250 0 0 chr11 52213163 52213211 -98570342 + (TA)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr11 52213416 52213438 -98570115 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 52214078 52214100 -98569453 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 52214498 52214522 -98569031 + AT_rich Low_complexity Low_complexity 1 24 0 395 318 33 20 chr11 52214541 52214692 -98568861 + MIR SINE MIR 14 166 -96 226 222 69 14 chr11 52214725 52214797 -98568756 + HAL1 LINE L1 630 705 -1802 455 217 72 7 chr11 52214806 52214944 -98568609 + MER31B LTR ERV1 320 466 0 333 291 55 68 chr11 52214944 52215164 -98568389 + HAL1 LINE L1 2291 2507 0 180 0 0 0 chr11 52215167 52215187 -98568366 + (TA)n Simple_repeat Simple_repeat 2 21 0 444 317 0 0 chr11 52215287 52215410 -98568143 - MLT2B3 LTR ERVL -57 497 375 * 925 234 17 17 chr11 52215408 52215647 -98567906 - MLT2B3 LTR ERVL -315 239 1 441 99 33 55 chr11 52215886 52215977 -98567576 - L1PA10 LINE L1 -3 6165 6077 293 337 11 80 chr11 52217971 52218247 -98565306 - L2 LINE L2 -63 3250 2994 347 181 0 24 chr11 52218283 52218366 -98565187 + (TATG)n Simple_repeat Simple_repeat 2 82 0 249 391 94 0 chr11 52218372 52218564 -98564989 - L2 LINE L2 -349 2965 2756 1520 175 10 0 chr11 52220204 52220512 -98563041 - AluY SINE Alu 0 311 1 374 291 50 31 chr11 52223692 52224011 -98559542 + L1ME3A LINE L1 5266 5590 -576 362 259 88 6 chr11 52224067 52224237 -98559316 + L1ME3A LINE L1 5683 5866 -304 1311 191 20 20 chr11 52224422 52224715 -98558838 + AluJo SINE Alu 3 295 -17 22 35 0 0 chr11 52224770 52224799 -98558754 + AT_rich Low_complexity Low_complexity 1 29 0 39493 64 4 1 chr11 52225058 52231181 -98552372 - L1PA5 LINE L1 -4 6150 11 1872 104 54 11 chr11 52232580 52232859 -98550694 - AluSp SINE Alu -22 291 1 344 303 123 99 chr11 52233309 52234039 -98549514 + L1M2 LINE L1 680 1427 -5422 414 221 19 135 chr11 52234303 52234511 -98549042 + MER5A DNA MER1_type 6 189 0 285 29 0 0 chr11 52235679 52235713 -98547840 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 580 198 0 36 chr11 52235716 52235827 -98547726 - AluSg/x SINE Alu -29 283 177 561 248 108 32 chr11 52238018 52238332 -98545221 + L1MB7 LINE L1 5841 6178 0 1129 209 57 45 chr11 52244146 52244384 -98539169 + MER2 DNA MER2_type 2 247 -97 2283 100 0 7 chr11 52244384 52244685 -98538868 + AluSc SINE Alu 1 299 -10 1129 209 57 45 chr11 52244685 52244781 -98538772 + MER2 DNA MER2_type 247 340 -4 21 57 0 0 chr11 52245204 52245239 -98538314 + AT_rich Low_complexity Low_complexity 1 35 0 1758 168 6 19 chr11 52245527 52245560 -98537993 - AluSx SINE Alu -1 311 279 198 0 0 0 chr11 52245560 52245582 -98537971 + (TTG)n Simple_repeat Simple_repeat 1 22 0 1758 168 6 19 chr11 52245582 52245863 -98537690 - AluSx SINE Alu -33 279 1 2052 125 0 3 chr11 52246433 52246730 -98536823 + AluSg SINE Alu 1 296 -14 2049 138 3 0 chr11 52246921 52247217 -98536336 - AluSx SINE Alu -15 297 1 32 57 0 0 chr11 52247620 52247673 -98535880 + AT_rich Low_complexity Low_complexity 1 53 0 1733 112 0 0 chr11 52247677 52247910 -98535643 - AluSx SINE Alu -24 288 56 1949 168 34 67 chr11 52248457 52248903 -98534650 - Tigger2a DNA MER2_type -1 433 3 200 351 81 27 chr11 52249465 52249613 -98533940 - L2 LINE L2 -22 3291 3136 1143 230 31 14 chr11 52249617 52249904 -98533649 + AluJb SINE Alu 6 297 -15 207 348 21 70 chr11 52249907 52249993 -98533560 - L2 LINE L2 -159 3154 3080 2452 71 0 10 chr11 52249993 52250304 -98533249 - AluY SINE Alu -3 308 1 207 348 21 70 chr11 52250304 52250404 -98533149 - L2 LINE L2 -233 3080 2977 1755 155 11 7 chr11 52251669 52251981 -98531572 - AluSx SINE Alu 0 317 5 247 196 18 0 chr11 52252172 52252228 -98531325 + (TG)n Simple_repeat Simple_repeat 2 58 0 627 262 27 0 chr11 52254760 52254909 -98528644 - Tigger3(Golem) DNA MER2_type -1 3028 2876 1019 117 0 0 chr11 52255089 52255234 -98528319 + AluSc SINE Alu 155 299 -10 738 213 0 0 chr11 52256315 52256456 -98527097 - FLAM_C SINE Alu 0 143 3 410 239 0 11 chr11 52256469 52256557 -98526996 - AluS SINE Alu -216 87 1 1659 169 0 0 chr11 52257773 52258033 -98525520 + AluSx SINE Alu 39 298 -14 2262 109 10 0 chr11 52258034 52258338 -98525215 + AluSg SINE Alu 2 308 -2 1994 93 75 0 chr11 52258705 52258983 -98524570 + AluSx SINE Alu 1 299 -13 1293 196 9 86 chr11 52260086 52260206 -98523347 + AluJo SINE Alu 1 129 -183 2108 125 0 22 chr11 52260206 52260525 -98523028 - AluSx SINE Alu 0 312 1 1293 196 9 86 chr11 52260525 52260730 -98522823 + AluJo SINE Alu 129 301 -11 273 319 0 0 chr11 52260854 52260923 -98522630 - MER5A DNA MER1_type -6 183 115 21 71 0 0 chr11 52261056 52261098 -98522455 + AT_rich Low_complexity Low_complexity 1 42 0 28 95 0 0 chr11 52261185 52261269 -98522284 + AT_rich Low_complexity Low_complexity 1 84 0 410 196 0 21 chr11 52261392 52261489 -98522064 + L1MA6 LINE L1 6204 6298 -2 35 41 0 0 chr11 52262603 52262652 -98520901 + AT_rich Low_complexity Low_complexity 1 49 0 212 0 0 35 chr11 52262687 52262716 -98520837 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2108 116 3 0 chr11 52262718 52263002 -98520551 - AluSc SINE Alu -24 285 1 1506 181 35 31 chr11 52263241 52263529 -98520024 - AluJb SINE Alu -23 289 1 841 127 34 7 chr11 52263554 52263821 -98519732 + CT-rich Low_complexity Low_complexity 1 274 0 711 167 23 23 chr11 52263824 52263956 -98519597 - FLAM_C SINE Alu -1 132 1 1193 255 73 60 chr11 52264057 52264508 -98519045 - MLT1C LTR MaLR -2 465 9 30 0 0 0 chr11 52264728 52264758 -98518795 + AT_rich Low_complexity Low_complexity 1 30 0 210 71 0 0 chr11 52265650 52265678 -98517875 + (A)n Simple_repeat Simple_repeat 1 28 0 1921 140 0 11 chr11 52265891 52266206 -98517347 + AluSq SINE Alu 3 314 0 195 100 0 0 chr11 52268111 52268141 -98515412 + (T)n Simple_repeat Simple_repeat 1 30 0 23 114 0 0 chr11 52269393 52269507 -98514046 + AT_rich Low_complexity Low_complexity 1 114 0 982 220 121 66 chr11 52269607 52269939 -98513614 - MLT2B1 LTR ERVL -58 462 113 2524 47 0 10 chr11 52270035 52270335 -98513218 - AluY SINE Alu -14 297 1 1965 153 0 0 chr11 52270828 52271131 -98512422 + AluSx SINE Alu 1 303 0 22 35 0 0 chr11 52271314 52271343 -98512210 + AT_rich Low_complexity Low_complexity 1 29 0 242 234 0 13 chr11 52271462 52271539 -98512014 + (TA)n Simple_repeat Simple_repeat 1 76 0 191 386 26 39 chr11 52271602 52271755 -98511798 - L2 LINE L2 -225 3047 2897 1618 176 3 3 chr11 52273020 52273310 -98510243 + AluSx SINE Alu 1 290 -22 298 245 40 13 chr11 52273337 52273488 -98510065 + (TA)n Simple_repeat Simple_repeat 2 156 0 27 0 0 0 chr11 52274395 52274422 -98509131 + AT_rich Low_complexity Low_complexity 1 27 0 205 108 54 0 chr11 52275256 52275293 -98508260 + GA-rich Low_complexity Low_complexity 2 40 0 23 54 0 0 chr11 52276866 52276903 -98506650 + AT_rich Low_complexity Low_complexity 1 37 0 284 411 74 23 chr11 52278039 52278348 -98505205 + L2 LINE L2 2948 3272 0 1762 179 3 37 chr11 52278856 52279207 -98504346 + MER2 DNA MER2_type 7 345 0 1524 200 9 19 chr11 52279604 52279919 -98503634 - AluJb SINE Alu 0 312 1 21 36 0 0 chr11 52280074 52280102 -98503451 + AT_rich Low_complexity Low_complexity 1 28 0 324 277 0 0 chr11 52280194 52280259 -98503294 - FLAM_A SINE Alu -67 65 1 594 292 61 59 chr11 52280452 52280843 -98502710 + L1M4b LINE L1 545 936 -5923 521 223 8 0 chr11 52281424 52281554 -98501999 + (TA)n Simple_repeat Simple_repeat 1 131 0 639 78 0 0 chr11 52281631 52281721 -98501832 + (TA)n Simple_repeat Simple_repeat 2 91 0 824 113 28 14 chr11 52281788 52281929 -98501624 - L1PA16 LINE L1 -3 6163 6021 301 272 169 59 chr11 52287342 52287596 -98495957 - L1M2 LINE L1 -5674 1175 894 2453 165 23 0 chr11 52287710 52288146 -98495407 - L1PA16 LINE L1 -108 6058 5613 307 93 0 0 chr11 52288287 52288330 -98495223 + MLT2F LTR ERVL 621 663 0 10425 15 0 0 chr11 52289062 52291047 -98492506 - L1HS LINE L1 0 6155 4171 2001 170 30 16 chr11 52291273 52291638 -98491915 + L1PA15-16 LINE L1 1235 1604 -5245 284 250 0 0 chr11 52291637 52291709 -98491844 + L1 LINE L1 4847 4918 -1228 * 1680 167 68 0 chr11 52291714 52291995 -98491558 + MER1B DNA MER1_type 40 339 0 243 233 58 29 chr11 52292047 52292150 -98491403 + L1PA15-16 LINE L1 1621 1726 -5123 249 291 0 0 chr11 52292674 52292753 -98490800 - L1MC4 LINE L1 -1339 6703 6625 192 77 0 0 chr11 52293789 52293815 -98489738 + (A)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr11 52295171 52295200 -98488353 + AT_rich Low_complexity Low_complexity 1 29 0 1739 143 8 15 chr11 52296368 52296655 -98486898 - AluSx SINE Alu 0 304 20 516 274 104 27 chr11 52296758 52297017 -98486536 + L1ME3A LINE L1 5384 5662 -500 684 176 0 0 chr11 52297026 52297134 -98486419 - FLAM_C SINE Alu -15 128 21 444 284 29 42 chr11 52297134 52297373 -98486180 + L1ME3A LINE L1 5660 5895 -275 348 282 0 0 chr11 52297712 52297790 -98485763 + L1MCc LINE L1 823 900 -5523 320 191 12 0 chr11 52297978 52298062 -98485491 + (TA)n Simple_repeat Simple_repeat 1 85 0 314 335 48 40 chr11 52298087 52298484 -98485069 - L1 LINE L1 -3600 2546 2147 1952 277 40 28 chr11 52298519 52299316 -98484237 + L1MB7 LINE L1 5368 6174 -10 1832 250 59 29 chr11 52299327 52300043 -98483510 + L1ME LINE L1 4656 5415 -751 1751 176 7 3 chr11 52300043 52300338 -98483215 + AluJo SINE Alu 1 296 -16 1832 250 59 29 chr11 52300338 52300758 -98482795 + L1ME LINE L1 5415 5821 -345 1207 222 48 23 chr11 52300844 52301236 -98482317 + L1P LINE L1 2059 2460 -3686 361 253 71 51 chr11 52302541 52302735 -98480818 + MER63 DNA MER1_type 11 1060 -1 33 43 0 0 chr11 52302996 52303043 -98480510 + AT_rich Low_complexity Low_complexity 1 47 0 266 88 0 0 chr11 52303112 52303146 -98480407 - U2 snRNA snRNA -154 34 1 213 121 0 0 chr11 52305811 52305844 -98477709 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 354 238 33 33 chr11 52306202 52306353 -98477200 + (TCTCTG)n Simple_repeat Simple_repeat 3 153 0 22 0 0 0 chr11 52306357 52306379 -98477174 + AT_rich Low_complexity Low_complexity 1 22 0 898 200 0 0 chr11 52306379 52306529 -98477024 - FRAM SINE Alu -28 148 1 2391 64 0 17 chr11 52306538 52306834 -98476719 - AluSc SINE Alu -15 294 4 352 299 21 43 chr11 52307337 52307524 -98476029 + L2 LINE L2 3107 3289 -24 24 0 0 0 chr11 52308689 52308713 -98474840 + AT_rich Low_complexity Low_complexity 1 24 0 307 262 48 39 chr11 52308897 52309000 -98474553 + L2 LINE L2 3176 3279 -34 516 307 94 35 chr11 52309819 52310161 -98473392 + MLT1L LTR MaLR 109 470 -145 424 221 76 19 chr11 52310193 52310351 -98473202 + L1MC4 LINE L1 7125 7291 -751 364 248 17 34 chr11 52310430 52310547 -98473006 + L1MC4 LINE L1 7436 7550 -492 360 311 47 91 chr11 52310848 52311196 -98472357 + L1MCb LINE L1 78 411 -5634 3110 99 20 2 chr11 52311196 52311642 -98471911 + L1PA11 LINE L1 5721 6174 0 360 311 47 91 chr11 52311642 52311656 -98471897 + L1MCb LINE L1 411 424 -5621 585 264 37 6 chr11 52312611 52312774 -98470779 - MER5A DNA MER1_type -21 168 1 1605 197 29 24 chr11 52313164 52313580 -98469973 + Charlie1b DNA MER1_type 59 476 -47 276 216 65 72 chr11 52313583 52313722 -98469831 - L1MB7 LINE L1 -12 6172 6035 2828 53 3 0 chr11 52313740 52314096 -98469457 - L1PA5 LINE L1 -8 6146 5790 1456 214 4 0 chr11 52314241 52314517 -98469036 - AluJb SINE Alu -35 277 1 326 237 172 0 chr11 52314517 52314643 -98468910 - L1ME1 LINE L1 -244 5922 5811 835 82 0 16 chr11 52314652 52314774 -98468779 - L1PA16 LINE L1 -1 6165 6046 245 339 70 86 chr11 52314936 52315376 -98468177 + L2 LINE L2 1816 2248 -1066 1659 188 24 95 chr11 52315446 52315898 -98467655 + LTR54 LTR ERV1 1 420 -90 233 26 0 0 chr11 52315907 52315946 -98467607 - L1PA2 LINE L1 -2 6153 6115 418 202 29 10 chr11 52315951 52316055 -98467498 + LTR54 LTR ERV1 405 510 0 2251 72 4 0 chr11 52316096 52316400 -98467153 - AluY SINE Alu 0 305 1 204 284 114 11 chr11 52316520 52316608 -98466945 + L2 LINE L2 2442 2538 -776 404 273 121 52 chr11 52316734 52316935 -98466618 + MLT2B2 LTR ERVL 186 402 -118 390 139 0 0 chr11 52316977 52317049 -98466504 + (CA)n Simple_repeat Simple_repeat 1 72 0 233 175 0 0 chr11 52317052 52317092 -98466461 + MLT2D LTR ERVL 374 413 -1 23 0 0 0 chr11 52317342 52317365 -98466188 + AT_rich Low_complexity Low_complexity 1 23 0 220 333 0 0 chr11 52318408 52318471 -98465082 + GA-rich Low_complexity Low_complexity 4 66 0 216 86 0 0 chr11 52319468 52319503 -98464050 + (T)n Simple_repeat Simple_repeat 1 35 0 21 57 0 0 chr11 52320729 52320764 -98462789 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr11 52321145 52321173 -98462380 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 52321297 52321320 -98462233 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr11 52321672 52321699 -98461854 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1223 254 64 50 chr11 52321751 52322207 -98461346 + MLT1C LTR MaLR 6 467 0 25 51 0 0 chr11 52322364 52322403 -98461150 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr11 52322437 52322462 -98461091 + AT_rich Low_complexity Low_complexity 1 25 0 466 300 115 65 chr11 52322680 52323080 -98460473 + HAL1 LINE L1 1915 2334 -173 1849 156 0 7 chr11 52324175 52324487 -98459066 - AluSx SINE Alu 0 314 5 23727 112 12 12 chr11 52324530 52328249 -98455304 + L1P LINE L1 901 4619 -1527 401 299 0 0 chr11 52328253 52328350 -98455203 - MIR SINE MIR -146 116 20 2055 134 0 7 chr11 52328350 52328656 -98454897 + AluSx SINE Alu 1 304 -8 293 175 0 48 chr11 52329152 52329215 -98454338 - L2 LINE L2 -213 3059 3000 1563 205 3 0 chr11 52329282 52329575 -98453978 + AluJb SINE Alu 3 296 -16 279 318 65 0 chr11 52329869 52329976 -98453577 + L1ME4a LINE L1 5531 5644 -520 1086 272 120 68 chr11 52330094 52330818 -98452735 + LTR41 LTR ERVL 5 766 -7 27 0 0 0 chr11 52331193 52331220 -98452333 + AT_rich Low_complexity Low_complexity 1 27 0 24 53 0 0 chr11 52332086 52332124 -98451429 + AT_rich Low_complexity Low_complexity 1 38 0 248 154 26 115 chr11 52332245 52332323 -98451230 - MIR SINE MIR -121 141 71 1539 189 0 17 chr11 52332610 52332907 -98450646 + AluJo SINE Alu 1 292 -20 31 26 0 0 chr11 52333171 52333209 -98450344 + AT_rich Low_complexity Low_complexity 1 38 0 320 261 62 11 chr11 52333232 52333408 -98450145 + L1ME4a LINE L1 5935 6119 -2 475 196 87 0 chr11 52333795 52333887 -98449666 + MER8 DNA MER2_type 23 122 -117 809 47 0 9 chr11 52333899 52334006 -98449547 - L1PA5 LINE L1 -1 6153 6048 718 105 0 9 chr11 52334006 52334125 -98449428 + L1PA6 LINE L1 5919 6036 -119 2095 213 9 2 chr11 52334448 52334904 -98448649 - L1 LINE L1 -1056 5090 4632 295 313 0 0 chr11 52335156 52335236 -98448317 - LTR50 LTR ERVL -715 80 1 297 0 0 0 chr11 52335509 52335542 -98448011 + (TC)n Simple_repeat Simple_repeat 2 34 0 1836 158 0 0 chr11 52335548 52335821 -98447732 - AluSx SINE Alu -36 276 4 380 76 25 38 chr11 52335981 52336060 -98447493 + L1MA3 LINE L1 6228 6305 0 293 342 27 0 chr11 52336222 52336333 -98447220 - L2 LINE L2 0 3313 3200 443 319 41 98 chr11 52336516 52336782 -98446771 - MIR SINE MIR -4 258 8 332 290 0 57 chr11 52336822 52336946 -98446607 - L2 LINE L2 -1 3271 3155 1638 135 17 0 chr11 52338056 52338344 -98445209 + L1MA9 LINE L1 6015 6307 -5 880 176 0 34 chr11 52340032 52340212 -98443341 + FRAM SINE Alu 4 178 0 1218 264 42 3 chr11 52340663 52340997 -98442556 - LTR16A LTR ERVL -3 447 101 232 322 117 37 chr11 52341130 52341321 -98442232 - MIR SINE MIR -51 211 16 281 296 0 52 chr11 52341488 52341603 -98441950 - MIR SINE MIR -121 141 33 224 175 16 0 chr11 52342135 52342198 -98441355 + CT-rich Low_complexity Low_complexity 1 64 0 504 249 70 65 chr11 52343681 52343882 -98439671 - MIR3 SINE MIR -5 203 2 256 238 16 0 chr11 52344314 52344377 -98439176 - L2 LINE L2 -8 3305 3242 23 0 0 0 chr11 52344616 52344639 -98438914 + AT_rich Low_complexity Low_complexity 1 23 0 4277 293 131 17 chr11 52344837 52347123 -98436430 - L2 LINE L2 -8 3305 764 564 147 35 69 chr11 52348103 52348219 -98435334 - L1MA6 LINE L1 -9 6291 6180 2009 144 0 0 chr11 52348349 52348634 -98434919 - AluSx SINE Alu -25 287 3 199 197 155 0 chr11 52349016 52349087 -98434466 + MIR SINE MIR 127 208 -54 323 282 82 93 chr11 52349262 52349542 -98434011 + L2 LINE L2 3032 3308 -5 186 372 26 0 chr11 52349622 52349700 -98433853 - L2 LINE L2 -71 3201 3122 930 192 4 6 chr11 52349742 52349915 -98433638 - MLT1C LTR MaLR 0 483 305 290 65 0 22 chr11 52350324 52350370 -98433183 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 189 0 0 0 chr11 52350538 52350559 -98432994 + (TG)n Simple_repeat Simple_repeat 2 22 0 798 211 128 45 chr11 52350560 52350802 -98432751 - MER2 DNA MER2_type 0 345 84 368 105 0 0 chr11 52350799 52350856 -98432697 - U2 snRNA snRNA -131 57 1 * 341 192 13 64 chr11 52350859 52350937 -98432616 - MER2 DNA MER2_type -248 97 24 258 220 0 0 chr11 52351012 52351071 -98432482 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 490 126 16 0 chr11 52351189 52351287 -98432266 + L1MA1 LINE L1 5835 5938 -362 1668 112 7 4 chr11 52351291 52351560 -98431993 + L1MA2 LINE L1 5867 6136 -168 30 52 0 39 chr11 52351753 52351830 -98431723 + AT_rich Low_complexity Low_complexity 1 74 0 21 36 0 0 chr11 52352461 52352489 -98431064 + AT_rich Low_complexity Low_complexity 1 28 0 249 274 16 0 chr11 52352722 52352784 -98430769 + MIR SINE MIR 199 261 -1 26 0 0 0 chr11 52352866 52352892 -98430661 + AT_rich Low_complexity Low_complexity 1 26 0 36 23 0 0 chr11 52353168 52353211 -98430342 + AT_rich Low_complexity Low_complexity 1 43 0 458 99 80 0 chr11 52353211 52353373 -98430180 + (TA)n Simple_repeat Simple_repeat 2 176 0 31 44 0 0 chr11 52353597 52353642 -98429911 + AT_rich Low_complexity Low_complexity 1 45 0 299 244 52 146 chr11 52355762 52356049 -98427504 - L2 LINE L2 -817 2497 2238 873 314 25 19 chr11 52356182 52356497 -98427056 - MLT1J2 LTR MaLR -131 319 3 613 266 122 8 chr11 52356498 52356735 -98426818 - L2 LINE L2 -1092 2222 1959 198 0 0 0 chr11 52356883 52356905 -98426648 + (TA)n Simple_repeat Simple_repeat 2 23 0 3557 106 10 4 chr11 52356908 52357416 -98426137 + MER9 LTR ERVK 1 511 0 24 67 0 0 chr11 52357597 52357642 -98425911 + AT_rich Low_complexity Low_complexity 1 45 0 1869 161 3 7 chr11 52357655 52357965 -98425588 - AluJb SINE Alu -3 309 1 243 329 13 0 chr11 52358717 52358793 -98424760 - L2 LINE L2 -1379 1935 1859 1687 171 3 7 chr11 52358872 52359164 -98424389 - MER47A DNA MER2_type -74 292 2 31 0 0 0 chr11 52359338 52359369 -98424184 + AT_rich Low_complexity Low_complexity 1 31 0 343 276 29 12 chr11 52359451 52359621 -98423932 + L1ME3A LINE L1 5255 5427 -735 1761 253 60 38 chr11 52359623 52359960 -98423593 + L1ME3A LINE L1 5499 5827 -343 656 269 66 5 chr11 52359960 52360157 -98423396 - MER63A DNA MER1_type 0 210 2 1761 253 60 38 chr11 52360157 52360472 -98423081 + L1ME3A LINE L1 5827 6165 -5 229 203 17 17 chr11 52360533 52360592 -98422961 + L1ME4a LINE L1 5964 6022 -99 2051 105 14 3 chr11 52360676 52360970 -98422583 + AluSc SINE Alu 1 297 -12 27 0 0 0 chr11 52361003 52361030 -98422523 + AT_rich Low_complexity Low_complexity 1 27 0 318 286 71 0 chr11 52361291 52361389 -98422164 - L1ME2 LINE L1 -3 6161 6057 884 239 14 9 chr11 52361526 52361744 -98421809 + AluJo SINE Alu 1 219 -93 477 47 0 0 chr11 52361767 52361831 -98421722 + (GAAA)n Simple_repeat Simple_repeat 2 65 0 24 0 0 0 chr11 52361900 52361924 -98421629 + AT_rich Low_complexity Low_complexity 1 24 0 729 252 37 59 chr11 52362120 52362441 -98421112 - MER83C LTR ERV1 -11 362 49 246 259 0 0 chr11 52362507 52362565 -98420988 + MIR SINE MIR 97 154 -108 27 0 0 0 chr11 52363042 52363069 -98420484 + AT_rich Low_complexity Low_complexity 1 27 0 24 53 0 0 chr11 52363935 52363973 -98419580 + AT_rich Low_complexity Low_complexity 1 38 0 245 154 26 115 chr11 52364094 52364172 -98419381 - MIR SINE MIR -121 141 71 1509 189 0 17 chr11 52364459 52364756 -98418797 + AluJo SINE Alu 1 292 -20 31 26 0 0 chr11 52365020 52365058 -98418495 + AT_rich Low_complexity Low_complexity 1 38 0 348 264 62 11 chr11 52365081 52365259 -98418294 + L1ME4a LINE L1 5935 6121 0 471 206 87 0 chr11 52365644 52365736 -98417817 + MER8 DNA MER2_type 23 122 -117 807 47 0 9 chr11 52365748 52365855 -98417698 - L1PA5 LINE L1 -1 6153 6048 1001 60 0 0 chr11 52365855 52365988 -98417565 + L1PA5 LINE L1 5919 6051 -103 227 208 42 0 chr11 52366724 52366772 -98416781 + MER8 DNA MER2_type 107 156 -83 771 186 0 21 chr11 52366772 52366917 -98416636 - FRAM SINE Alu -13 163 22 420 197 0 0 chr11 52366982 52367058 -98416495 - Tigger2 DNA MER2_type -2642 76 1 185 229 57 0 chr11 52367489 52367524 -98416029 - L2 LINE L2 -94 3219 3183 500 282 55 17 chr11 52367732 52367913 -98415640 - MIR SINE MIR -10 252 65 228 35 0 0 chr11 52368235 52368264 -98415289 + (CA)n Simple_repeat Simple_repeat 1 29 0 303 304 62 46 chr11 52368850 52369238 -98414315 - L1ME4a LINE L1 -206 5915 5522 29 47 0 0 chr11 52369462 52369505 -98414048 + AT_rich Low_complexity Low_complexity 1 43 0 468 100 67 33 chr11 52370462 52370552 -98413001 + L1PA8 LINE L1 6078 6170 -2 219 244 0 0 chr11 52370608 52370653 -98412900 + (CATA)n Simple_repeat Simple_repeat 3 47 0 22 0 0 0 chr11 52370861 52370883 -98412670 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 52371524 52371546 -98412007 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 52371944 52371968 -98411585 + AT_rich Low_complexity Low_complexity 1 24 0 403 318 33 20 chr11 52371987 52372138 -98411415 + MIR SINE MIR 14 166 -96 505 217 72 7 chr11 52372252 52372390 -98411163 + MER31B LTR ERV1 320 466 0 228 243 90 113 chr11 52372390 52372612 -98410941 + HAL1 LINE L1 2291 2507 0 207 0 0 0 chr11 52372615 52372638 -98410915 + (TA)n Simple_repeat Simple_repeat 2 24 0 2306 131 19 8 chr11 52372693 52373053 -98410500 + THE1B LTR MaLR 1 364 0 209 359 147 16 chr11 52373174 52373358 -98410195 - L2 LINE L2 -830 2484 2277 1260 157 0 64 chr11 52374187 52374219 -98409334 + MER46A DNA MER2_type 3 35 -2696 369 108 0 0 chr11 52374219 52374284 -98409269 + L1MA2 LINE L1 6239 6303 -1 1260 157 0 64 chr11 52374284 52374500 -98409053 + MER46A DNA MER2_type 35 235 -1 16531 194 23 57 chr11 52375304 52376710 -98406843 - L1PA12 LINE L1 -1352 6232 4780 944 163 58 0 chr11 52376710 52376882 -98406671 - AluY SINE Alu 0 311 130 16531 194 23 57 chr11 52376882 52377243 -98406310 - L1PA12 LINE L1 -2804 4780 4408 2345 84 0 0 chr11 52377243 52377541 -98406012 - AluY SINE Alu -13 298 1 16531 194 23 57 chr11 52377541 52380944 -98402609 - L1PA12 LINE L1 -3176 4408 1 238 263 69 109 chr11 52381175 52381350 -98402203 + MIR SINE MIR 46 213 -49 896 281 96 35 chr11 52381652 52382191 -98401362 + L2 LINE L2 2686 3313 0 181 383 80 37 chr11 52382345 52382507 -98401046 - L2 LINE L2 -213 3059 2891 274 282 0 24 chr11 52382957 52383042 -98400511 + L1MC4a LINE L1 5834 5916 -1892 777 274 13 43 chr11 52383067 52383297 -98400256 + MIR SINE MIR 1 223 -39 604 254 0 8 chr11 52383700 52383862 -98399691 + FLAM_A SINE Alu 1 133 0 774 272 53 0 chr11 52383998 52384241 -98399312 - MIR SINE MIR 0 262 7 1475 216 13 0 chr11 52384330 52384636 -98398917 + AluJb SINE Alu 1 310 -2 204 248 0 0 chr11 52384639 52384740 -98398813 + A-rich Low_complexity Low_complexity 1 101 0 200 317 142 0 chr11 52384891 52385011 -98398542 - L2 LINE L2 -56 3257 3121 1110 106 0 0 chr11 52385418 52385569 -98397984 - AluSx SINE Alu -157 155 5 315 105 79 0 chr11 52385736 52385812 -98397741 + A-rich Low_complexity Low_complexity 3 84 0 1775 169 0 0 chr11 52387131 52387410 -98396143 + AluSx SINE Alu 1 279 -33 26 0 0 0 chr11 52387950 52387976 -98395577 + AT_rich Low_complexity Low_complexity 1 26 0 421 341 28 38 chr11 52388625 52388836 -98394717 + MIR SINE MIR 16 224 -38 310 289 56 28 chr11 52388857 52388999 -98394554 - L1M4 LINE L1 -3426 2720 2575 368 319 25 31 chr11 52389204 52389394 -98394159 + MIR SINE MIR 30 212 -50 21 95 0 0 chr11 52389953 52390016 -98393537 + AT_rich Low_complexity Low_complexity 1 63 0 234 236 0 0 chr11 52390070 52390125 -98393428 - MIR SINE MIR -102 160 106 211 319 56 0 chr11 52390883 52390955 -98392598 + L2 LINE L2 3175 3250 -22 225 65 0 0 chr11 52391572 52391603 -98391950 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 240 347 40 0 chr11 52391606 52391681 -98391872 + L2 LINE L2 3234 3311 -2 1459 191 109 87 chr11 52391832 52392462 -98391091 - LTR48B LTR ERV1 0 644 1 482 282 127 0 chr11 52392869 52393011 -98390542 - MIR SINE MIR -50 212 53 22 56 0 0 chr11 52394073 52394109 -98389444 + AT_rich Low_complexity Low_complexity 1 36 0 1246 225 32 113 chr11 52394258 52394468 -98389085 + LTR9 LTR ERV1 1 226 -386 2218 89 0 46 chr11 52394468 52394792 -98388761 + AluSp SINE Alu 1 309 -4 1246 225 32 113 chr11 52394792 52395105 -98388448 + LTR9 LTR ERV1 226 482 -130 21 0 0 0 chr11 52395472 52395493 -98388060 + AT_rich Low_complexity Low_complexity 1 21 0 390 375 26 62 chr11 52395692 52395996 -98387557 - L2 LINE L2 -30 3242 2950 1841 210 78 43 chr11 52396095 52396700 -98386853 + L1M4 LINE L1 2692 3317 -2829 269 277 15 0 chr11 52396709 52396774 -98386779 + L2 LINE L2 3204 3269 -3 248 286 36 54 chr11 52396960 52397072 -98386481 + MIR SINE MIR 136 245 -17 2297 76 0 17 chr11 52397909 52398211 -98385342 - AluSc SINE Alu -12 297 1 354 229 79 62 chr11 52398219 52398446 -98385107 - L1ME4a LINE L1 -185 5936 5706 2366 95 0 0 chr11 52398848 52399154 -98384399 + AluSx SINE Alu 1 306 -6 1040 314 68 14 chr11 52399323 52399763 -98383790 - LTR16B LTR ERVL 0 464 1 2099 257 52 29 chr11 52400128 52400820 -98382733 + L1ME2 LINE L1 5447 6154 -10 412 247 107 20 chr11 52401696 52401846 -98381707 + MIR SINE MIR 28 190 -72 591 295 11 66 chr11 52402035 52402306 -98381247 + MER46C DNA MER2_type 71 326 -12 1183 179 82 20 chr11 52404129 52404476 -98379077 - Charlie2 DNA MER1_type 0 2862 2494 1348 284 51 10 chr11 52404476 52404888 -98378665 + LTR16A LTR ERVL 1 429 -21 1337 217 103 56 chr11 52404899 52405035 -98378518 - Charlie2 DNA MER1_type -369 2493 2365 2126 117 7 0 chr11 52405035 52405333 -98378220 + AluSx SINE Alu 1 300 -12 1337 217 103 56 chr11 52405333 52405805 -98377748 - Charlie2 DNA MER1_type -497 2365 1856 658 297 113 8 chr11 52405814 52406070 -98377483 - Charlie2 DNA MER1_type -2544 318 36 201 278 289 11 chr11 52406219 52406309 -98377244 - L2 LINE L2 -4 3309 3195 267 293 12 12 chr11 52406310 52406392 -98377161 - Tigger5 DNA MER2_type 0 2323 2242 * 437 197 0 0 chr11 52406382 52406458 -98377095 + Tigger5 DNA MER2_type 2242 2317 -6 360 188 29 0 chr11 52406460 52406529 -98377024 - Tigger5 DNA MER2_type -2244 79 9 628 217 133 0 chr11 52407339 52407505 -98376048 + MER5A DNA MER1_type 1 188 -1 376 103 0 0 chr11 52407624 52407682 -98375871 - AluY SINE Alu 0 300 243 24 67 0 0 chr11 52407685 52407730 -98375823 + AT_rich Low_complexity Low_complexity 1 45 0 1833 66 0 4 chr11 52407874 52408116 -98375437 - AluY SINE Alu -70 241 1 183 42 0 0 chr11 52408493 52408517 -98375036 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1599 122 8 8 chr11 52408519 52408757 -98374796 - AluSx SINE Alu -29 283 46 30 59 0 0 chr11 52408870 52408921 -98374632 + AT_rich Low_complexity Low_complexity 1 51 0 24 67 0 0 chr11 52408977 52409022 -98374531 + AT_rich Low_complexity Low_complexity 1 45 0 684 265 39 17 chr11 52409179 52409413 -98374140 + L1ME2 LINE L1 5925 6163 -1 186 283 62 80 chr11 52409828 52409941 -98373612 - L2 LINE L2 -33 3280 3170 24 32 0 0 chr11 52410320 52410351 -98373202 + AT_rich Low_complexity Low_complexity 1 31 0 1857 111 75 0 chr11 52410682 52410961 -98372592 + AluSg SINE Alu 3 302 -8 273 310 113 14 chr11 52411070 52411212 -98372341 + L1MEd LINE L1 509 664 -5455 1151 295 72 35 chr11 52411542 52412657 -98370896 + L1MEd LINE L1 2269 3424 -2705 2085 119 7 0 chr11 52412675 52412969 -98370584 + AluSg SINE Alu 1 296 -14 420 299 174 15 chr11 52413117 52413703 -98369850 + L1MEd LINE L1 3457 4135 -1994 238 250 0 0 chr11 52414430 52414482 -98369071 + HAL1 LINE L1 2068 2119 -388 354 254 217 18 chr11 52414501 52414773 -98368780 + HAL1 LINE L1 2182 2507 0 2063 58 0 11 chr11 52415031 52415306 -98368247 + AluYa5 SINE Alu 31 302 -9 682 206 15 0 chr11 52415585 52415716 -98367837 - FLAM_A SINE Alu 0 133 1 2120 127 0 3 chr11 52416433 52416740 -98366813 + AluSx SINE Alu 1 306 -6 24 0 0 0 chr11 52417034 52417058 -98366495 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr11 52418058 52418085 -98365468 + (TA)n Simple_repeat Simple_repeat 2 28 0 34 55 0 0 chr11 52418317 52418372 -98365181 + AT_rich Low_complexity Low_complexity 1 55 0 863 195 250 17 chr11 52419212 52419448 -98364105 - AluJo SINE Alu -8 294 4 655 155 202 0 chr11 52419575 52419704 -98363849 + FRAM SINE Alu 1 150 -26 1552 227 131 52 chr11 52420585 52421264 -98362289 + MER50 LTR ERV1 2 734 0 419 200 25 75 chr11 52421382 52421502 -98362051 + MER69 DNA AcHobo 1 2463 -63 209 333 0 0 chr11 52421518 52421584 -98361969 + (TATG)n Simple_repeat Simple_repeat 3 68 0 2157 114 23 0 chr11 52421734 52422040 -98361513 + AluSp SINE Alu 1 313 0 472 267 104 0 chr11 52422238 52422373 -98361180 - MIR SINE MIR -109 153 5 1270 192 155 3 chr11 52422392 52422683 -98360870 + MER58B DNA MER1_type 7 341 0 24 53 0 0 chr11 52423407 52423445 -98360108 + AT_rich Low_complexity Low_complexity 1 38 0 203 289 123 18 chr11 52423620 52423734 -98359819 - L2 LINE L2 -476 2838 2713 217 234 0 0 chr11 52423814 52423861 -98359692 + (CATA)n Simple_repeat Simple_repeat 1 47 0 383 335 106 0 chr11 52424389 52424550 -98359003 - MIR SINE MIR -36 226 49 359 20 0 20 chr11 52424755 52424804 -98358749 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 2200 77 7 0 chr11 52425806 52426093 -98357460 + AluSc SINE Alu 1 289 -20 357 125 0 0 chr11 52426093 52426149 -98357404 + (GGGGA)n Simple_repeat Simple_repeat 2 57 0 465 335 69 0 chr11 52426815 52426988 -98356565 - MIR SINE MIR 0 262 78 193 305 55 92 chr11 52427081 52427245 -98356308 + MIR SINE MIR 22 179 -83 230 316 18 18 chr11 52427419 52427476 -98356077 - L2 LINE L2 -102 3170 3114 * 318 294 24 0 chr11 52427468 52427553 -98356000 - MIR SINE MIR -2 260 174 246 259 0 0 chr11 52427625 52427683 -98355870 - MIR SINE MIR -108 154 97 738 255 34 59 chr11 52427749 52428071 -98355482 + MER83C LTR ERV1 49 362 -11 24 0 0 0 chr11 52428267 52428291 -98355262 + AT_rich Low_complexity Low_complexity 1 24 0 693 0 0 0 chr11 52428357 52428434 -98355119 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 884 239 14 9 chr11 52428465 52428683 -98354870 - AluJo SINE Alu -93 219 1 318 286 71 0 chr11 52428820 52428918 -98354635 + L1ME2 LINE L1 6057 6161 -3 27 0 0 0 chr11 52429179 52429206 -98354347 + AT_rich Low_complexity Low_complexity 1 27 0 1989 113 14 3 chr11 52429239 52429530 -98354023 - AluSc SINE Alu -15 294 1 229 203 17 17 chr11 52429614 52429673 -98353880 - L1ME4a LINE L1 -99 6022 5964 1733 254 60 38 chr11 52429734 52430049 -98353504 - L1ME3A LINE L1 -5 6165 5858 656 269 66 5 chr11 52430049 52430246 -98353307 + MER63A DNA MER1_type 2 210 0 1733 254 60 38 chr11 52430246 52430583 -98352970 - L1ME3A LINE L1 -312 5858 5499 332 282 29 12 chr11 52430585 52430755 -98352798 - L1ME3A LINE L1 -735 5427 5255 31 0 0 0 chr11 52430837 52430868 -98352685 + AT_rich Low_complexity Low_complexity 1 31 0 1676 171 3 7 chr11 52431042 52431334 -98352219 + MER47A DNA MER2_type 2 292 -74 214 175 18 18 chr11 52431582 52431639 -98351914 + CT-rich Low_complexity Low_complexity 2 58 0 221 357 27 0 chr11 52431750 52431862 -98351691 + MIR3 SINE MIR 91 205 -3 349 317 40 74 chr11 52431883 52432085 -98351468 + MLT1K LTR MaLR 180 374 -214 351 286 63 51 chr11 52433033 52433208 -98350345 - MIR SINE MIR -55 207 31 22 56 0 0 chr11 52433342 52433378 -98350175 + AT_rich Low_complexity Low_complexity 1 36 0 2024 126 0 23 chr11 52433706 52434015 -98349538 - AluSc SINE Alu -7 302 1 252 348 142 19 chr11 52434055 52434210 -98349343 - MIR SINE MIR -75 187 14 3507 184 10 10 chr11 52434367 52435040 -98348513 + L1MC1 LINE L1 5659 6331 -2 1203 154 43 9 chr11 52435043 52435276 -98348277 + L1MC2 LINE L1 6095 6335 -9 1592 195 14 0 chr11 52435666 52435948 -98347605 - AluJo SINE Alu -26 286 1 181 333 24 60 chr11 52436150 52436234 -98347319 - L2 LINE L2 -19 3253 3173 372 282 84 30 chr11 52436798 52436929 -98346624 + L2 LINE L2 3133 3270 -2 3921 167 23 40 chr11 52437179 52438004 -98345549 - L1MA10 LINE L1 -15 6319 5509 217 139 0 0 chr11 52438818 52438854 -98344699 - L3 LINE CR1 -9 1568 1533 210 357 58 35 chr11 52440047 52440218 -98343335 + L2 LINE L2 228 402 -2912 1066 229 29 0 chr11 52440222 52440427 -98343126 - MER58A DNA MER1_type 0 224 14 608 254 99 20 chr11 52441047 52441248 -98342305 - MIR SINE MIR 0 262 46 626 307 108 39 chr11 52444044 52444507 -98339046 + MLT1G1 LTR MaLR 5 499 -56 1602 163 9 41 chr11 52444507 52444753 -98338800 + AluJb SINE Alu 1 236 -76 3453 153 29 3 chr11 52444753 52445372 -98338181 + MER41B LTR ERV1 1 635 0 1602 163 9 41 chr11 52445372 52445444 -98338109 + AluJb SINE Alu 236 309 -3 243 354 0 21 chr11 52445771 52445867 -98337686 + MIR SINE MIR 151 244 -18 216 175 0 0 chr11 52445994 52446034 -98337519 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 204 277 0 0 chr11 52446661 52446708 -98336845 + MIR SINE MIR 66 112 -150 342 239 84 52 chr11 52447869 52448024 -98335529 - MER110 LTR ERV1 -10 481 322 2130 125 7 0 chr11 52448560 52448863 -98334690 - AluSq SINE Alu -8 305 1 234 0 0 0 chr11 52449177 52449203 -98334350 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1215 139 5 5 chr11 52449675 52449862 -98333691 - AluJo SINE Alu 0 312 126 752 303 92 54 chr11 52449934 52450399 -98333154 - MLT1K LTR MaLR -34 554 72 183 291 0 55 chr11 52450422 52450477 -98333076 - MIR3 SINE MIR -53 155 104 327 353 20 20 chr11 52451459 52451609 -98331944 + L2 LINE L2 3164 3313 0 229 62 0 0 chr11 52451687 52451719 -98331834 - MER53 DNA DNA -155 34 3 251 293 0 0 chr11 52451821 52451896 -98331657 - MLT1I LTR MaLR -26 383 309 332 205 12 12 chr11 52452015 52452098 -98331455 - L1MA9 LINE L1 -73 6239 6157 2542 176 32 63 chr11 52452450 52453128 -98330425 - L1 LINE L1 -1438 4708 4052 2113 133 3 0 chr11 52453604 52453906 -98329647 - AluSq SINE Alu -10 303 1 183 333 194 16 chr11 52454098 52454227 -98329326 - L2 LINE L2 -4 3268 3117 2336 204 95 34 chr11 52454593 52455276 -98328277 + MER50 LTR ERV1 10 734 0 1727 122 29 11 chr11 52455357 52455664 -98327889 - AluY SINE Alu 0 312 1 23 0 0 0 chr11 52455787 52455810 -98327743 + AT_rich Low_complexity Low_complexity 1 23 0 430 300 128 13 chr11 52455965 52456192 -98327361 + L1ME3A LINE L1 2147 2399 -3997 1101 106 0 12 chr11 52456210 52456371 -98327182 + AluYa5 SINE Alu 153 311 0 287 253 27 0 chr11 52456464 52456539 -98327014 + L1ME3A LINE L1 2823 2899 -3316 293 308 19 42 chr11 52456588 52456635 -98326918 + L1ME3A LINE L1 5043 5090 -1125 3666 92 64 23 chr11 52456635 52457211 -98326342 - MER4A LTR ERV1 0 600 1 293 308 19 42 chr11 52457211 52457306 -98326247 + L1ME3A LINE L1 5090 5186 -1029 1958 120 32 3 chr11 52457306 52457589 -98325964 + AluSg SINE Alu 3 293 -17 293 308 19 42 chr11 52457589 52457705 -98325848 + L1ME3A LINE L1 5186 5296 -919 318 172 0 31 chr11 52457723 52457787 -98325766 + L1ME3A LINE L1 5447 5508 -739 594 268 16 0 chr11 52457803 52457986 -98325567 + L1ME3A LINE L1 5866 6051 -188 1311 233 31 7 chr11 52458054 52458346 -98325207 - AluJb SINE Alu -3 299 1 4933 172 41 89 chr11 52458385 52458875 -98324678 - L1PA15 LINE L1 0 6816 6304 2450 75 7 0 chr11 52458875 52459180 -98324373 - AluY SINE Alu -4 307 1 4933 172 41 89 chr11 52459180 52460633 -98322920 - L1PA15 LINE L1 -512 6304 4990 996 272 74 19 chr11 52460635 52461206 -98322347 - L1PA15 LINE L1 -2859 3938 1166 2311 127 36 8 chr11 52461235 52461598 -98321955 + THE1C LTR MaLR 1 373 -2 2620 281 43 24 chr11 52461622 52462409 -98321144 - L1PA15 LINE L1 -5985 802 1 1002 285 81 67 chr11 52462451 52462662 -98320891 + L1M4 LINE L1 3504 3711 -2435 2478 62 3 3 chr11 52462662 52462968 -98320585 + AluY SINE Alu 1 306 -5 1002 285 81 67 chr11 52462968 52463887 -98319666 + L1M4 LINE L1 3711 4649 -1497 1918 157 121 21 chr11 52464332 52464720 -98318833 + MSTA LTR MaLR 2 428 0 26 50 0 0 chr11 52465027 52465067 -98318486 + AT_rich Low_complexity Low_complexity 1 40 0 1950 122 40 43 chr11 52465699 52466075 -98317478 - THE1C LTR MaLR 0 375 1 225 240 20 0 chr11 52466452 52466502 -98317051 + G-rich Low_complexity Low_complexity 5 55 0 1058 281 82 42 chr11 52466816 52467243 -98316310 + L2 LINE L2 2866 3309 -4 267 167 0 0 chr11 52467760 52467808 -98315745 - MLT2B3 LTR ERVL -7 513 466 268 145 16 16 chr11 52467814 52467876 -98315677 + (TA)n Simple_repeat Simple_repeat 1 62 0 2541 169 63 52 chr11 52467879 52468414 -98315139 - MLT2B3 LTR ERVL -42 512 1 1345 186 31 156 chr11 52468416 52468928 -98314625 - MLT1C LTR MaLR -19 448 1 1532 227 62 15 chr11 52469062 52469467 -98314086 - MER63B DNA MER1_type -2 434 11 519 324 91 17 chr11 52469473 52469769 -98313784 + L2 LINE L2 2988 3305 -8 215 370 62 20 chr11 52470440 52470586 -98312967 + MIR SINE MIR 3 154 -108 213 376 75 0 chr11 52470606 52470699 -98312854 - MER91A DNA MER1_type -3 193 94 203 88 29 0 chr11 52472291 52472325 -98311228 + (TCCCC)n Simple_repeat Simple_repeat 5 39 0 1636 146 0 0 chr11 52472326 52472559 -98310994 - AluSx SINE Alu -32 280 48 25 31 0 0 chr11 52472656 52472688 -98310865 + AT_rich Low_complexity Low_complexity 1 32 0 1517 214 7 7 chr11 52473353 52473648 -98309905 - AluJo SINE Alu -15 297 3 378 263 54 54 chr11 52473653 52473839 -98309714 + HAL1 LINE L1 2321 2506 -1 326 293 120 43 chr11 52474333 52474633 -98308920 + L1M4 LINE L1 4630 4952 -1194 1412 204 58 16 chr11 52474685 52475190 -98308363 + MER67C LTR ERV1 67 688 -22 1667 158 71 46 chr11 52475234 52475600 -98307953 - THE1C LTR MaLR 0 375 1 253 365 114 24 chr11 52476415 52476582 -98306971 + MIR SINE MIR 1 182 -80 306 288 71 43 chr11 52476582 52476766 -98306787 - MER112 DNA MER1_type -5 255 67 2561 93 35 3 chr11 52476806 52477173 -98306380 + L1P LINE L1 3996 4374 -1772 317 310 62 31 chr11 52477173 52477302 -98306251 - MIR SINE MIR -127 135 3 180 328 39 31 chr11 52478657 52478785 -98304768 - L3 LINE CR1 -176 1401 1273 353 312 168 0 chr11 52478891 52478931 -98304622 - MIR SINE MIR -59 203 171 267 31 0 0 chr11 52478931 52478963 -98304590 + (TTA)n Simple_repeat Simple_repeat 2 33 0 353 312 168 0 chr11 52478963 52479095 -98304458 - MIR SINE MIR -91 171 2 293 263 186 0 chr11 52479474 52479630 -98303923 + MIR SINE MIR 71 255 -7 180 0 0 0 chr11 52479999 52480019 -98303534 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 375 167 15 0 chr11 52481176 52481242 -98302311 + MER94 DNA DNA 5 71 -63 579 273 68 34 chr11 52482143 52482181 -98301372 - MIR SINE MIR -21 241 206 198 0 0 0 chr11 52482181 52482203 -98301350 + (CA)n Simple_repeat Simple_repeat 2 23 0 579 273 68 34 chr11 52482203 52482369 -98301184 - MIR SINE MIR -56 206 30 36 70 0 0 chr11 52482687 52482758 -98300795 + AT_rich Low_complexity Low_complexity 1 71 0 4978 146 28 7 chr11 52483438 52484751 -98298802 - L1MA3 LINE L1 0 7719 6346 3144 195 16 8 chr11 52484730 52485769 -98297784 - L1MA3 LINE L1 -3180 4385 3339 * 6441 159 10 2 chr11 52485766 52486779 -98296774 - L1MA3 LINE L1 -6225 1340 320 242 73 24 0 chr11 52487290 52487331 -98296222 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 543 223 18 0 chr11 52487331 52487443 -98296110 - FLAM_C SINE Alu -27 116 3 769 238 6 12 chr11 52488492 52488660 -98294893 - MER45A DNA AcHobo 0 178 12 431 284 43 26 chr11 52489149 52489265 -98294288 - L2 LINE L2 -10 3303 3186 199 91 23 23 chr11 52489721 52489765 -98293788 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 198 0 0 0 chr11 52490295 52490317 -98293236 + (T)n Simple_repeat Simple_repeat 1 22 0 323 200 89 0 chr11 52490515 52490605 -98292948 - L1 LINE L1 -1320 4826 4729 297 0 0 0 chr11 52490943 52490976 -98292577 + (CA)n Simple_repeat Simple_repeat 2 34 0 276 199 53 114 chr11 52491086 52491217 -98292336 + MIR SINE MIR 81 203 -59 559 276 73 21 chr11 52491318 52491510 -98292043 + MIR SINE MIR 5 206 -56 1810 72 4 17 chr11 52492301 52492537 -98291016 - AluSp SINE Alu -17 296 64 180 77 0 0 chr11 52493412 52493438 -98290115 + (CAAAAA)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr11 52493491 52493512 -98290041 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr11 52494076 52494117 -98289436 + AT_rich Low_complexity Low_complexity 1 41 0 266 328 139 0 chr11 52494237 52494359 -98289194 - MIR SINE MIR -77 185 47 183 216 20 20 chr11 52494479 52494530 -98289023 + MIR3 SINE MIR 126 176 -32 21 0 0 0 chr11 52494606 52494627 -98288926 + AT_rich Low_complexity Low_complexity 1 21 0 219 372 41 0 chr11 52494675 52494796 -98288757 - MIR SINE MIR -71 191 66 29 47 0 0 chr11 52495087 52495130 -98288423 + AT_rich Low_complexity Low_complexity 1 43 0 234 200 50 0 chr11 52495180 52495240 -98288313 + (TA)n Simple_repeat Simple_repeat 2 64 0 25 51 0 0 chr11 52495534 52495573 -98287980 + AT_rich Low_complexity Low_complexity 1 39 0 1667 186 0 14 chr11 52496283 52496579 -98286974 + AluJo SINE Alu 1 292 -20 21 0 0 0 chr11 52496579 52496600 -98286953 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 52496885 52496907 -98286646 + AT_rich Low_complexity Low_complexity 1 22 0 369 312 45 6 chr11 52497080 52497237 -98286316 - L1MC4a LINE L1 -1907 5901 5739 14820 72 1 1 chr11 52497547 52499528 -98284025 - L1PA6 LINE L1 -2000 4146 2166 9281 63 1 2 chr11 52499530 52501524 -98282029 + L1PA6 LINE L1 4163 6154 0 252 115 39 19 chr11 52501686 52501738 -98281815 - L1MC5 LINE L1 -54 7907 7855 322 301 141 39 chr11 52502162 52502368 -98281185 + MIR SINE MIR 20 246 -16 315 333 102 53 chr11 52502446 52502692 -98280861 + L3 LINE CR1 1164 1421 -156 945 252 33 0 chr11 52502726 52502936 -98280617 - MER20 DNA MER1_type 0 219 3 192 111 0 0 chr11 52504015 52504051 -98279502 + (GGAA)n Simple_repeat Simple_repeat 4 39 0 * 213 121 0 0 chr11 52504045 52504078 -98279475 + (GGAGAA)n Simple_repeat Simple_repeat 4 36 0 1543 167 67 11 chr11 52504239 52504521 -98279032 - AluJo SINE Alu -4 308 11 297 308 23 93 chr11 52504646 52504860 -98278693 + L2 LINE L2 2972 3170 -102 484 288 65 31 chr11 52506011 52506240 -98277313 - MIR SINE MIR -25 237 1 563 333 58 24 chr11 52507303 52507685 -98275868 - LTR16A LTR ERVL -1 449 55 2116 105 78 5 chr11 52508410 52508777 -98274776 - LTR7 LTR ERV1 0 450 1 3836 88 13 11 chr11 52508777 52509333 -98274220 - HERVH LTR ERV1 0 7713 7157 2248 174 9 5 chr11 52509326 52509751 -98273802 - HERVH LTR ERV1 -1697 6016 5590 * 7630 135 8 6 chr11 52509742 52511145 -98272408 - HERVH LTR ERV1 -1805 5286 3806 2747 138 2 5 chr11 52511139 52511588 -98271965 - HERVH LTR ERV1 -4126 3587 3140 * 13505 135 9 27 chr11 52511582 52514297 -98269256 - HERVH LTR ERV1 -4726 2987 2 1982 115 163 42 chr11 52514300 52514700 -98268853 - LTR7 LTR ERV1 -2 448 1 998 278 146 9 chr11 52515526 52515951 -98267602 + L2 LINE L2 1807 2289 -1025 1804 240 35 7 chr11 52515959 52516413 -98267140 - L2 LINE L2 -529 2785 2319 371 322 63 79 chr11 52516516 52516945 -98266608 - HAL1 LINE L1 -2065 442 21 235 258 0 45 chr11 52517183 52517249 -98266304 + L2 LINE L2 3251 3313 0 200 388 121 51 chr11 52517349 52517761 -98265792 - L2 LINE L2 -4 3268 2828 22 70 0 0 chr11 52518286 52518329 -98265224 + AT_rich Low_complexity Low_complexity 1 43 0 1065 162 0 11 chr11 52518889 52519054 -98264499 - AluSg/x SINE Alu -14 296 132 2105 124 0 10 chr11 52519054 52519361 -98264192 - AluY SINE Alu -7 304 1 1065 162 0 11 chr11 52519361 52519374 -98264179 - AluSg/x SINE Alu -178 132 120 1865 140 0 7 chr11 52520359 52520637 -98262916 + AluSx SINE Alu 1 276 -36 243 0 0 0 chr11 52520643 52520670 -98262883 + (CAA)n Simple_repeat Simple_repeat 1 27 0 47 61 0 0 chr11 52520711 52520793 -98262760 + AT_rich Low_complexity Low_complexity 1 82 0 198 264 273 35 chr11 52521331 52521521 -98262032 + MIR SINE MIR 26 257 -5 553 241 212 25 chr11 52521536 52521810 -98261743 - MER46C DNA MER2_type -11 327 3 243 0 0 0 chr11 52526169 52526196 -98257357 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 442 264 18 18 chr11 52526412 52526522 -98257031 - L2 LINE L2 -14 3299 3190 388 321 77 10 chr11 52526559 52526755 -98256798 + LTR33A LTR ERVL 267 475 -48 21 36 0 0 chr11 52526912 52526940 -98256613 + AT_rich Low_complexity Low_complexity 1 28 0 183 232 0 36 chr11 52527000 52527056 -98256497 - L2 LINE L2 -1476 1838 1785 372 261 7 10 chr11 52527082 52527190 -98256363 - MER63 DNA MER1_type -28 1660 694 1163 199 52 131 chr11 52527197 52527585 -98255968 + MLT1A2 LTR MaLR 3 359 -15 25 75 0 0 chr11 52527770 52527823 -98255730 + AT_rich Low_complexity Low_complexity 1 53 0 253 401 39 16 chr11 52528108 52528290 -98255263 - L2 LINE L2 -496 2818 2633 216 0 0 0 chr11 52528378 52528402 -98255151 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 253 219 31 0 chr11 52528675 52528739 -98254814 - L1MC3 LINE L1 -1139 6646 6581 1563 174 9 50 chr11 52529244 52529566 -98253987 - AluJb SINE Alu -3 309 1 187 355 13 0 chr11 52531019 52531095 -98252458 + MIR SINE MIR 66 142 -66 332 200 12 0 chr11 52531603 52531688 -98251865 + (TA)n Simple_repeat Simple_repeat 1 86 0 186 43 0 0 chr11 52531697 52531720 -98251833 + (GA)n Simple_repeat Simple_repeat 2 24 0 1328 195 77 11 chr11 52531720 52531981 -98251572 - AluJo SINE Alu -34 278 1 5427 104 9 19 chr11 52532532 52533388 -98250165 - L1PB2 LINE L1 -80 6071 5224 871 150 52 6 chr11 52533572 52533745 -98249808 - L1MA9 LINE L1 -2 6310 6130 584 108 0 0 chr11 52534608 52534691 -98248862 + AluSg/x SINE Alu 214 296 -13 26 50 0 0 chr11 52535551 52535591 -98247962 + AT_rich Low_complexity Low_complexity 1 40 0 2369 102 0 3 chr11 52535652 52535966 -98247587 - AluSq SINE Alu 0 313 1 21 0 0 0 chr11 52536670 52536691 -98246862 + AT_rich Low_complexity Low_complexity 1 21 0 228 222 0 37 chr11 52537240 52537294 -98246259 - L2 LINE L2 -4 3309 3258 253 341 12 0 chr11 52537602 52537687 -98245866 + CT-rich Low_complexity Low_complexity 2 87 0 1124 298 46 26 chr11 52538008 52538549 -98245004 - L1ME3A LINE L1 -264 5906 5355 21 36 0 0 chr11 52538601 52538629 -98244924 + AT_rich Low_complexity Low_complexity 1 28 0 189 154 0 0 chr11 52538634 52538673 -98244880 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 205 244 37 0 chr11 52538715 52538797 -98244756 + (TA)n Simple_repeat Simple_repeat 1 85 0 212 139 0 23 chr11 52538819 52538862 -98244691 + (CATA)n Simple_repeat Simple_repeat 3 44 0 11783 138 25 40 chr11 52540364 52540937 -98242616 - Tigger1 DNA MER2_type 0 2418 1838 1907 130 0 0 chr11 52540937 52541198 -98242355 + AluSx SINE Alu 22 282 -30 217 0 29 29 chr11 52541201 52541235 -98242318 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 11783 138 25 40 chr11 52541235 52541766 -98241787 - Tigger1 DNA MER2_type -582 1836 1299 2257 182 2 9 chr11 52541766 52542206 -98241347 - L1PB4 LINE L1 -4 6152 5716 11783 138 25 40 chr11 52542206 52543240 -98240313 - Tigger1 DNA MER2_type -1119 1299 307 210 37 0 0 chr11 52544719 52544746 -98238807 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1996 129 4 0 chr11 52544748 52545026 -98238527 - AluSg SINE Alu -31 279 1 667 256 128 5 chr11 52545044 52545247 -98238306 - MIR SINE MIR 0 262 35 871 192 6 0 chr11 52545405 52545561 -98237992 - AluJb SINE Alu -19 293 137 2149 137 3 0 chr11 52545598 52545905 -98237648 - AluSx SINE Alu -4 308 1 597 196 0 0 chr11 52545945 52546047 -98237506 - AluJ/FLAM SINE Alu -210 102 1 341 343 76 59 chr11 52546053 52546409 -98237144 - L2 LINE L2 -520 2794 2433 264 30 0 0 chr11 52547577 52547610 -98235943 + (T)n Simple_repeat Simple_repeat 1 33 0 2246 207 37 4 chr11 52547891 52548399 -98235154 - L1 LINE L1 -1754 4392 3868 549 143 38 19 chr11 52548413 52548518 -98235035 + L1PA16 LINE L1 5929 6035 -131 1206 200 30 22 chr11 52548536 52548766 -98234787 - Tigger5 DNA MER2_type -2091 232 1 575 233 96 7 chr11 52548815 52548961 -98234592 + MER5A DNA MER1_type 28 186 -3 324 298 89 24 chr11 52549275 52549443 -98234110 + MIR SINE MIR 70 248 -14 1507 185 43 4 chr11 52549520 52549796 -98233757 - AluJo SINE Alu -25 287 1 26 30 0 0 chr11 52549926 52549959 -98233594 + AT_rich Low_complexity Low_complexity 1 33 0 240 250 16 16 chr11 52549963 52550027 -98233526 - MIR SINE MIR -3 259 196 255 31 0 0 chr11 52550998 52551030 -98232523 + (TG)n Simple_repeat Simple_repeat 2 33 0 393 220 73 60 chr11 52551063 52551213 -98232340 - MLT1J LTR MaLR -347 164 13 535 290 103 18 chr11 52552296 52552568 -98230985 - L2 LINE L2 0 3313 3019 2004 130 10 0 chr11 52552640 52552939 -98230614 + AluSx SINE Alu 1 302 -10 296 390 59 12 chr11 52553335 52553504 -98230049 + L3b LINE CR1 1393 1569 -14 305 215 237 0 chr11 52554790 52554925 -98228628 - L1MC/D LINE L1 -1976 5832 5666 985 339 22 38 chr11 52554946 52555442 -98228111 - L2 LINE L2 0 3313 2826 23 0 0 0 chr11 52555498 52555521 -98228032 + AT_rich Low_complexity Low_complexity 1 23 0 1837 182 9 0 chr11 52555532 52555867 -98227686 + L1MB3 LINE L1 5636 5973 -210 324 303 91 8 chr11 52556978 52557110 -98226443 - MIR SINE MIR 0 262 120 26 30 0 0 chr11 52558252 52558285 -98225268 + AT_rich Low_complexity Low_complexity 1 33 0 1430 206 88 47 chr11 52558893 52559516 -98224037 - Charlie2 DNA MER1_type -34 2828 2180 236 276 65 89 chr11 52559536 52559659 -98223894 - MER5B DNA MER1_type -57 121 2 273 289 0 0 chr11 52560622 52560698 -98222855 + (TG)n Simple_repeat Simple_repeat 1 76 0 365 311 74 0 chr11 52560880 52561070 -98222483 - L1ME LINE L1 -315 5806 5603 318 355 99 29 chr11 52561185 52561357 -98222196 - MIR3 SINE MIR -2 206 23 212 273 91 53 chr11 52561533 52561665 -98221888 - L3b LINE CR1 -143 1440 1304 37 23 0 0 chr11 52562311 52562355 -98221198 + AT_rich Low_complexity Low_complexity 1 44 0 2231 239 42 16 chr11 52562592 52563277 -98220276 - L1MEc LINE L1 -3006 3209 2507 394 268 62 31 chr11 52563244 52563468 -98220085 - L1MEc LINE L1 -4108 2288 2058 * 646 276 69 17 chr11 52563472 52563646 -98219907 + MER5A DNA MER1_type 4 186 -3 242 188 21 0 chr11 52563646 52563694 -98219859 - L1MEc LINE L1 -4329 2067 2019 1139 194 5 9 chr11 52563716 52563927 -98219626 - AluJo SINE Alu -19 293 84 1317 258 111 53 chr11 52563952 52565006 -98218547 - L1MEc LINE L1 -4425 1971 857 1040 210 15 0 chr11 52565006 52565206 -98218347 - MLT1B LTR MaLR 0 390 188 1866 311 38 28 chr11 52565322 52566145 -98217408 - L1MEc LINE L1 -5546 850 20 2112 112 3 0 chr11 52568487 52568781 -98214772 + AluSg1 SINE Alu 13 307 -2 2209 101 0 31 chr11 52569663 52569980 -98213573 + AluSx SINE Alu 3 309 -3 1709 156 54 3 chr11 52570294 52570589 -98212964 - AluJb SINE Alu -2 310 1 25 31 0 0 chr11 52570737 52570769 -98212784 + AT_rich Low_complexity Low_complexity 1 32 0 210 150 50 33 chr11 52570774 52570834 -98212719 + (CATA)n Simple_repeat Simple_repeat 2 62 0 2090 70 0 25 chr11 52571596 52571937 -98211616 - AluY SINE Alu 0 337 4 2020 106 7 0 chr11 52573863 52574177 -98209376 + AluSq SINE Alu 1 316 0 22 0 0 0 chr11 52575026 52575048 -98208505 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 52575334 52575357 -98208196 + AT_rich Low_complexity Low_complexity 1 23 0 45 0 0 0 chr11 52575823 52575868 -98207685 + AT_rich Low_complexity Low_complexity 1 45 0 2104 144 3 0 chr11 52576435 52576747 -98206806 + AluSq SINE Alu 1 313 0 935 209 81 0 chr11 52578498 52578708 -98204845 + MER82 DNA MER2_type 2 228 -425 737 217 19 0 chr11 52578837 52578998 -98204555 + MER82 DNA MER2_type 488 651 -2 2822 191 25 11 chr11 52579285 52579839 -98203714 + MER68 LTR ERV1 1 562 0 271 339 17 26 chr11 52580837 52580952 -98202601 + MIR SINE MIR 34 147 -115 339 230 124 43 chr11 52581116 52581277 -98202276 + MIR SINE MIR 57 230 -32 22 0 0 0 chr11 52582107 52582129 -98201424 + AT_rich Low_complexity Low_complexity 1 22 0 487 336 98 5 chr11 52582498 52582712 -98200841 + MIR SINE MIR 2 235 -27 818 306 98 82 chr11 52583544 52584010 -98199543 - L2 LINE L2 -449 2865 2385 1899 140 28 9 chr11 52584010 52584331 -98199222 - L1PB3 LINE L1 -4 6150 5824 818 306 98 82 chr11 52584331 52584498 -98199055 - L2 LINE L2 -929 2385 2222 563 348 41 15 chr11 52584588 52584858 -98198695 + LTR16A LTR ERVL 18 294 -156 660 315 39 22 chr11 52584875 52585107 -98198446 + HERV16 LTR ERVL 3 238 -4758 238 259 0 74 chr11 52585347 52585428 -98198125 + MLT2C1 LTR ERVL 269 343 -54 204 250 0 0 chr11 52585428 52585476 -98198077 + (TA)n Simple_repeat Simple_repeat 2 49 0 225 160 140 0 chr11 52585479 52585529 -98198024 + LTR16A LTR ERVL 253 309 -141 915 271 8 12 chr11 52585629 52585873 -98197680 - L1PB4 LINE L1 -2 6154 5912 354 349 169 26 chr11 52585943 52586293 -98197260 - L2 LINE L2 -1190 2124 1725 201 330 115 34 chr11 52586365 52586574 -98196979 - L2 LINE L2 -1588 1726 1501 2040 116 57 25 chr11 52586578 52586931 -98196622 + THE1B LTR MaLR 1 364 0 1125 221 9 22 chr11 52587259 52587485 -98196068 - MER58A DNA MER1_type 0 224 2 281 331 103 29 chr11 52587691 52587827 -98195726 + L2 LINE L2 3127 3272 0 534 310 19 0 chr11 52588222 52588377 -98195176 - MIR SINE MIR -73 189 32 239 328 8 16 chr11 52588608 52588736 -98194817 + L1ME LINE L1 5556 5682 -439 21 36 0 0 chr11 52588828 52588856 -98194697 + AT_rich Low_complexity Low_complexity 1 28 0 311 291 63 34 chr11 52588904 52589079 -98194474 + MIR SINE MIR 70 249 -13 333 0 0 0 chr11 52589760 52589797 -98193756 + (T)n Simple_repeat Simple_repeat 1 37 0 2875 3 3 0 chr11 52591401 52591718 -98191835 + AluYb8 SINE Alu 1 318 0 400 363 25 29 chr11 52591807 52592047 -98191506 - L3 LINE CR1 -19 1558 1320 686 241 73 18 chr11 52593248 52593468 -98190085 + MIR SINE MIR 31 262 0 467 143 0 9 chr11 52594585 52594697 -98188856 + (TA)n Simple_repeat Simple_repeat 2 112 0 228 360 72 16 chr11 52596036 52596161 -98187392 + L2 LINE L2 3182 3313 0 507 279 101 10 chr11 52596387 52596685 -98186868 + HAL1 LINE L1 2063 2387 -120 233 273 15 0 chr11 52596700 52596766 -98186787 + HAL1 LINE L1 2434 2500 -7 256 323 94 16 chr11 52597107 52597234 -98186319 + L2 LINE L2 3177 3313 0 391 269 140 35 chr11 52597615 52597786 -98185767 + MLT1J LTR MaLR 117 305 -206 193 348 59 8 chr11 52597842 52597960 -98185593 + MIR SINE MIR 129 252 -10 22 35 0 0 chr11 52598649 52598678 -98184875 + AT_rich Low_complexity Low_complexity 1 29 0 522 200 9 0 chr11 52599651 52599756 -98183797 - FLAM_A SINE Alu -6 136 31 332 351 59 0 chr11 52600053 52600203 -98183350 + MIR SINE MIR 36 198 -64 631 355 78 29 chr11 52600203 52600716 -98182837 + L2 LINE L2 2215 2752 -562 351 370 87 0 chr11 52600872 52600999 -98182554 + L2 LINE L2 3134 3271 -1 190 366 59 10 chr11 52601376 52601477 -98182076 - L2 LINE L2 -276 2996 2891 578 325 5 20 chr11 52601842 52602042 -98181511 + MIR SINE MIR 65 261 -1 197 105 0 26 chr11 52602440 52602478 -98181075 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 411 241 144 18 chr11 52602583 52602753 -98180800 + MIR SINE MIR 5 207 -55 270 270 170 31 chr11 52603018 52603177 -98180376 - MIR SINE MIR -19 243 63 21 0 0 0 chr11 52603669 52603690 -98179863 + AT_rich Low_complexity Low_complexity 1 21 0 906 295 121 45 chr11 52604140 52604560 -98178993 + LTR67 LTR ERVL 106 557 0 316 283 45 91 chr11 52604685 52604883 -98178670 + MIR SINE MIR 5 193 -69 180 318 0 0 chr11 52605236 52605280 -98178273 - L2 LINE L2 -1 3271 3228 216 333 90 9 chr11 52605351 52605462 -98178091 + MIR SINE MIR 116 235 -27 1686 274 46 22 chr11 52606642 52607190 -98176363 + L1MCb LINE L1 2 562 -5483 1683 217 52 93 chr11 52607268 52608157 -98175396 + L1MCb LINE L1 551 1442 -4851 * 4479 185 43 33 chr11 52608154 52608697 -98174856 + L1MC3 LINE L1 6738 7299 -486 3170 160 97 8 chr11 52608697 52609339 -98174214 - MER39 LTR ERV1 -4 703 5 4479 185 43 33 chr11 52609339 52609832 -98173721 + L1MC3 LINE L1 7299 7785 0 491 358 111 46 chr11 52610045 52610969 -98172584 - L2 LINE L2 -94 3178 2185 25 31 0 0 chr11 52611156 52611188 -98172365 + AT_rich Low_complexity Low_complexity 1 32 0 217 308 64 0 chr11 52611283 52611361 -98172192 + MIR SINE MIR 106 188 -74 223 308 221 0 chr11 52611466 52611570 -98171983 - MIR3 SINE MIR -54 154 28 2255 178 8 0 chr11 52612455 52612855 -98170698 + MER57A LTR ERV1 1 403 0 194 286 143 13 chr11 52612872 52612949 -98170604 - MIR SINE MIR -110 152 66 205 278 19 19 chr11 52613000 52613054 -98170499 - MIR SINE MIR -135 73 20 342 222 148 9 chr11 52613787 52613895 -98169658 + MIR SINE MIR 105 227 -35 319 160 0 0 chr11 52614014 52614064 -98169489 - 5S rRNA rRNA -29 92 43 23 33 0 0 chr11 52614170 52614200 -98169353 + AT_rich Low_complexity Low_complexity 1 30 0 358 313 145 0 chr11 52614208 52614339 -98169214 + MIR SINE MIR 5 154 -108 2101 194 5 10 chr11 52614339 52614693 -98168860 + MLT1B LTR MaLR 4 357 -33 12430 152 35 38 chr11 52614693 52617117 -98166436 + Tigger1 DNA MER2_type 1 2418 0 2101 194 5 10 chr11 52617117 52617149 -98166404 + MLT1B LTR MaLR 357 388 -2 248 343 56 9 chr11 52617151 52617259 -98166294 + MIR SINE MIR 150 262 0 28 71 0 0 chr11 52617679 52617735 -98165818 + AT_rich Low_complexity Low_complexity 1 56 0 230 245 82 0 chr11 52617830 52617879 -98165674 + L2 LINE L2 3234 3286 -27 193 314 144 45 chr11 52618137 52618449 -98165104 - L2 LINE L2 -337 2977 2635 28 29 0 0 chr11 52619745 52619780 -98163773 + AT_rich Low_complexity Low_complexity 1 35 0 797 258 42 32 chr11 52620141 52620358 -98163195 - MIR SINE MIR -28 234 16 246 62 0 0 chr11 52620543 52620575 -98162978 + (CA)n Simple_repeat Simple_repeat 1 32 0 225 301 68 0 chr11 52620688 52620761 -98162792 + L2 LINE L2 3230 3307 -6 207 0 0 0 chr11 52621259 52621282 -98162271 + (T)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr11 52623870 52623891 -98159662 + AT_rich Low_complexity Low_complexity 1 21 0 2321 85 35 3 chr11 52624848 52624879 -98158674 - L1PA12 LINE L1 -315 5853 5824 203 0 37 0 chr11 52624879 52624906 -98158647 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2321 85 35 3 chr11 52624906 52625190 -98158363 - L1PA12 LINE L1 -344 5824 5528 675 45 0 0 chr11 52625190 52625271 -98158282 + L1PA13 LINE L1 6075 6162 -1 1054 210 39 34 chr11 52625462 52625695 -98157858 + L1M4b LINE L1 3 236 -6623 6666 248 51 32 chr11 52625697 52627281 -98156272 - L1MEd LINE L1 -1545 5099 3450 2306 104 0 0 chr11 52627281 52627579 -98155974 + AluSq SINE Alu 1 298 -15 6666 248 51 32 chr11 52627579 52628514 -98155039 - L1MEd LINE L1 -3194 3450 2534 1122 171 23 1 chr11 52628529 52628828 -98154725 - MER1B DNA MER1_type -1 338 1 947 239 77 39 chr11 52628850 52629286 -98154267 - L1MEd LINE L1 -4453 2372 1794 393 281 0 36 chr11 52629282 52629421 -98154132 - L1MEd LINE L1 -4987 1555 1422 * 184 347 10 41 chr11 52629423 52629521 -98154032 - MIR SINE MIR -94 114 20 267 300 11 105 chr11 52629608 52629732 -98153821 - MIR SINE MIR -77 131 7 236 333 97 0 chr11 52630532 52630646 -98152907 + MER5B DNA MER1_type 53 177 -1 395 264 27 68 chr11 52630741 52630889 -98152664 - HERVL LTR ERVL -1361 4293 4152 476 348 40 13 chr11 52631695 52631919 -98151634 + ERVL LTR ERVL 5095 5324 -440 935 295 114 60 chr11 52632366 52633119 -98150434 + LTR50 LTR ERVL 1 794 -1 288 154 0 0 chr11 52633128 52633180 -98150373 + (CA)n Simple_repeat Simple_repeat 2 53 0 495 209 0 0 chr11 52633322 52633427 -98150126 - Charlie5 DNA MER1_type -260 2352 2248 283 225 0 14 chr11 52633439 52633510 -98150043 - Charlie5 DNA MER1_type -2513 99 30 1116 301 18 8 chr11 52633690 52634199 -98149354 + L1M4 LINE L1 3126 3639 -2507 26 0 0 0 chr11 52634199 52634225 -98149328 + AT_rich Low_complexity Low_complexity 1 26 0 8193 224 18 5 chr11 52634225 52636195 -98147358 + L1 LINE L1 2564 4559 -1587 249 362 135 16 chr11 52636765 52636950 -98146603 + L2 LINE L2 2747 2953 -361 514 323 88 35 chr11 52636968 52637454 -98146099 - L1MEd LINE L1 -5605 1029 518 2169 168 52 0 chr11 52638750 52639114 -98144439 + MLT1B LTR MaLR 8 390 0 330 354 78 29 chr11 52639177 52639383 -98144170 + MIR SINE MIR 21 236 -26 1122 320 105 84 chr11 52639563 52641387 -98142166 + L2 LINE L2 1376 3234 -79 487 313 12 12 chr11 52641458 52641621 -98141932 - MIR SINE MIR -98 164 2 405 265 61 0 chr11 52641905 52642003 -98141550 + MIR3 SINE MIR 82 185 -23 316 345 88 27 chr11 52642304 52642452 -98141101 - L2 LINE L2 -12 3260 3104 4767 37 0 0 chr11 52643345 52643914 -98139639 - L1PA4 LINE L1 -141 6014 5446 * 14445 37 1 1 chr11 52643909 52645669 -98137884 + L1P LINE L1 3540 5300 -846 3273 202 78 22 chr11 52645662 52646584 -98136969 + L1 LINE L1 2979 3952 -2194 * 210 150 10 80 chr11 52646602 52646702 -98136851 + T-rich Low_complexity Low_complexity 4 96 0 22 56 0 0 chr11 52646804 52646840 -98136713 + AT_rich Low_complexity Low_complexity 1 36 0 26 82 0 0 chr11 52646976 52647037 -98136516 + AT_rich Low_complexity Low_complexity 1 61 0 258 339 68 25 chr11 52647286 52647566 -98135987 + L1MC4a LINE L1 5630 5921 -1887 391 336 186 23 chr11 52647814 52648249 -98135304 - L2 LINE L2 0 3313 2808 826 288 89 78 chr11 52648350 52648823 -98134730 + L1PA13 LINE L1 1 478 -6309 2971 124 58 10 chr11 52648828 52649312 -98134241 + L1PA16 LINE L1 5576 6082 -84 184 260 137 0 chr11 52649462 52649535 -98134018 - MIR SINE MIR -89 173 91 322 285 135 36 chr11 52650314 52650507 -98133046 + MIR SINE MIR 40 251 -11 220 324 14 27 chr11 52650996 52651070 -98132483 + MIR SINE MIR 25 97 -111 1683 154 7 41 chr11 52651546 52651859 -98131694 - AluSx SINE Alu 0 303 1 2665 195 19 9 chr11 52651917 52652480 -98131073 + L1MC3 LINE L1 7217 7785 0 21 36 0 0 chr11 52652748 52652776 -98130777 + AT_rich Low_complexity Low_complexity 1 28 0 416 252 129 0 chr11 52653122 52653269 -98130284 - MIR SINE MIR 0 262 97 369 291 138 16 chr11 52653569 52653758 -98129795 + MIR SINE MIR 8 219 -43 561 62 12 12 chr11 52653869 52653949 -98129604 - L1P1 LINE L1 -652 5503 5424 258 324 50 82 chr11 52654591 52654773 -98128780 - MIR SINE MIR -86 176 1 23 0 0 0 chr11 52654961 52654984 -98128569 + AT_rich Low_complexity Low_complexity 1 23 0 2325 89 8 22 chr11 52654984 52655345 -98128208 - L1MA1 LINE L1 0 6302 5947 186 167 0 0 chr11 52655687 52655723 -98127830 + (TATG)n Simple_repeat Simple_repeat 2 37 0 229 340 68 27 chr11 52657604 52657751 -98125802 - MIR SINE MIR -98 164 12 2501 69 3 0 chr11 52658003 52658309 -98125244 - AluY SINE Alu -4 307 1 309 227 45 4 chr11 52658574 52658689 -98124864 + MIR SINE MIR 99 256 -6 188 330 19 48 chr11 52658880 52658983 -98124570 - L2 LINE L2 -14 3258 3159 231 343 55 0 chr11 52659113 52659186 -98124367 + L2 LINE L2 3196 3272 0 33 0 0 0 chr11 52660063 52660096 -98123457 + AT_rich Low_complexity Low_complexity 1 33 0 181 152 109 43 chr11 52660634 52660680 -98122873 + L2 LINE L2 3262 3310 -3 209 378 0 0 chr11 52661155 52661237 -98122316 - MIR SINE MIR -115 147 66 1902 128 7 10 chr11 52661433 52661722 -98121831 + AluSx SINE Alu 1 288 -24 185 402 11 0 chr11 52661958 52662050 -98121503 + MIR SINE MIR 48 140 -122 204 146 29 44 chr11 52662093 52662230 -98121323 + (TTATA)n Simple_repeat Simple_repeat 3 137 0 270 219 164 0 chr11 52662335 52662408 -98121145 + L2 LINE L2 3229 3313 0 243 358 83 52 chr11 52662473 52662702 -98120851 - L2 LINE L2 -15 3257 3022 186 273 55 0 chr11 52663238 52663293 -98120260 - MIR3 SINE MIR -19 189 132 387 294 101 12 chr11 52663321 52663569 -98119984 + L1M4 LINE L1 5098 5367 -779 1027 94 6 66 chr11 52663690 52663871 -98119682 - L1PA11 LINE L1 0 6174 6005 1484 235 23 3 chr11 52663879 52664271 -98119282 + L1 LINE L1 2591 2990 -3156 1322 59 5 32 chr11 52664300 52664486 -98119067 - L1PA4 LINE L1 -4 6151 5971 253 349 0 0 chr11 52667893 52667979 -98115574 + MLT1H LTR MaLR 354 439 -110 308 264 0 0 chr11 52668439 52668511 -98115042 + L2 LINE L2 3242 3313 0 272 357 47 16 chr11 52669300 52669429 -98114124 - MIR3 SINE MIR -54 154 22 763 122 17 0 chr11 52669619 52669734 -98113819 + AluSp/q SINE Alu 185 301 -12 302 202 0 11 chr11 52670947 52671036 -98112517 + CT-rich Low_complexity Low_complexity 1 88 0 1431 203 52 21 chr11 52671068 52671354 -98112199 - AluJo SINE Alu -6 296 2 221 0 0 33 chr11 52671409 52671439 -98112114 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 208 350 57 41 chr11 52671598 52671721 -98111832 + MIR3 SINE MIR 82 206 -2 669 168 49 138 chr11 52671770 52671973 -98111580 + AluJo SINE Alu 91 275 -37 321 325 92 39 chr11 52671988 52672338 -98111215 + L3 LINE CR1 1115 1447 -130 2047 122 0 7 chr11 52672648 52672934 -98110619 - AluSg SINE Alu -26 284 1 252 0 0 0 chr11 52673739 52673767 -98109786 + (CA)n Simple_repeat Simple_repeat 1 28 0 362 300 52 60 chr11 52673811 52674061 -98109492 - MER112 DNA MER1_type -11 249 2 438 257 209 0 chr11 52675377 52675525 -98108028 + MIR SINE MIR 73 251 -11 23 33 0 0 chr11 52676472 52676502 -98107051 + AT_rich Low_complexity Low_complexity 1 30 0 295 67 0 0 chr11 52676763 52676808 -98106745 + L1PA6 LINE L1 6110 6154 0 231 289 53 0 chr11 52677403 52677479 -98106074 - L2 LINE L2 0 3313 3234 219 69 0 0 chr11 52678828 52678857 -98104696 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 370 214 110 98 chr11 52678917 52679029 -98104524 + MER5B DNA MER1_type 1 117 -61 2701 19 0 3 chr11 52679029 52679341 -98104212 - AluYa5 SINE Alu 0 311 1 370 214 110 98 chr11 52679341 52679401 -98104152 + MER5B DNA MER1_type 117 175 -3 4790 186 50 8 chr11 52679609 52681036 -98102517 - L1MA9 LINE L1 -3 6309 4821 264 364 39 26 chr11 52681175 52681329 -98102224 - MER20B DNA MER1_type -626 157 2 265 239 34 11 chr11 52682529 52682621 -98100932 + (TCTCTG)n Simple_repeat Simple_repeat 1 94 0 23 33 0 0 chr11 52683720 52683750 -98099803 + AT_rich Low_complexity Low_complexity 1 30 0 610 202 0 0 chr11 52683768 52683877 -98099676 - FLAM_C SINE Alu -34 109 1 21 0 0 0 chr11 52683967 52683988 -98099565 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr11 52684160 52684202 -98099351 + (CA)n Simple_repeat Simple_repeat 2 43 0 572 331 127 15 chr11 52684959 52685291 -98098262 + L2 LINE L2 2939 3307 -6 180 365 0 63 chr11 52685532 52685595 -98097958 - L2 LINE L2 -76 3196 3138 24 0 0 0 chr11 52687544 52687568 -98095985 + AT_rich Low_complexity Low_complexity 1 24 0 201 213 0 0 chr11 52687710 52687757 -98095796 + (TA)n Simple_repeat Simple_repeat 2 48 0 384 22 0 0 chr11 52687766 52687811 -98095742 + (TG)n Simple_repeat Simple_repeat 2 46 0 189 0 0 0 chr11 52688922 52688943 -98094610 + (TA)n Simple_repeat Simple_repeat 2 22 0 186 133 0 0 chr11 52689164 52689194 -98094359 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 895 208 5 9 chr11 52689204 52689420 -98094133 - L1MA7 LINE L1 -1 6290 6076 531 230 41 52 chr11 52689549 52689683 -98093870 + L1PA16 LINE L1 6007 6139 -33 227 228 35 0 chr11 52689716 52689773 -98093780 + L1MC4 LINE L1 6658 6716 -1326 935 60 24 30 chr11 52689836 52690409 -98093144 + (TTTC)n Simple_repeat Simple_repeat 1 569 0 2407 123 24 67 chr11 52689866 52690241 -98093312 + MLT2A1 LTR ERVL 1 391 -53 935 60 24 30 chr11 52690241 52690409 -98093144 + (TTTC)n Simple_repeat Simple_repeat 1 167 0 2407 123 24 67 chr11 52690409 52690457 -98093096 + MLT2A1 LTR ERVL 391 405 -39 189 0 0 0 chr11 52690457 52690478 -98093075 + (TCCA)n Simple_repeat Simple_repeat 2 22 0 2407 123 24 67 chr11 52690478 52690517 -98093036 + MLT2A1 LTR ERVL 405 444 0 294 305 76 34 chr11 52690669 52690719 -98092834 - L1ME LINE L1 -326 5844 5798 369 0 0 0 chr11 52690719 52690760 -98092793 + (CA)n Simple_repeat Simple_repeat 2 42 0 294 305 76 34 chr11 52690760 52690945 -98092608 - L1ME LINE L1 -372 5798 5599 7252 42 14 0 chr11 52690963 52692063 -98091490 - L1PA4 LINE L1 0 6155 5051 1843 40 0 0 chr11 52692063 52692289 -98091264 + L1PA4 LINE L1 4841 5066 -1080 863 302 72 38 chr11 52692290 52693386 -98090167 - L1ME LINE L1 -612 5552 4420 676 199 7 7 chr11 52693433 52693569 -98089984 + MLT1A1 LTR MaLR 3 138 -227 1013 86 0 0 chr11 52693569 52693708 -98089845 - AluY SINE Alu -2 309 171 28 0 0 0 chr11 52693711 52693739 -98089814 + AT_rich Low_complexity Low_complexity 1 28 0 789 173 23 70 chr11 52693758 52693934 -98089619 + MLT1A1 LTR MaLR 215 365 0 487 278 107 44 chr11 52693970 52694420 -98089133 - L1ME LINE L1 -1833 4313 3836 2023 77 0 0 chr11 52694430 52694718 -98088835 + AluSp SINE Alu 39 326 0 1046 288 123 19 chr11 52694722 52695289 -98088264 - L1MB7 LINE L1 -32 6152 5527 1929 244 89 78 chr11 52695307 52695804 -98087749 - L1MB7 LINE L1 -1329 4817 4327 2063 153 0 0 chr11 52695804 52696112 -98087441 - AluSx SINE Alu -4 308 1 1929 244 89 78 chr11 52696112 52696696 -98086857 - L1MB7 LINE L1 -1819 4327 3724 242 371 30 8 chr11 52696873 52697005 -98086548 - MIR SINE MIR -56 206 72 254 171 0 182 chr11 52697328 52697416 -98086137 - HsTC2 DNA Tc2 -1 1897 1826 318 331 87 33 chr11 52697498 52697989 -98085564 - MLT1H LTR MaLR 0 555 31 271 167 0 0 chr11 52699785 52699833 -98083720 - MLT2D LTR ERVL 0 520 473 297 0 0 0 chr11 52699884 52699917 -98083636 + (TG)n Simple_repeat Simple_repeat 2 34 0 1454 216 48 31 chr11 52699953 52700304 -98083249 - MLT2D LTR ERVL -57 357 1 3664 176 43 14 chr11 52701563 52702436 -98081117 - L1MA7 LINE L1 -388 5903 4986 3358 134 11 0 chr11 52702436 52702982 -98080571 - L1PB1 LINE L1 -3 6148 5597 3664 176 43 14 chr11 52702982 52703436 -98080117 - L1MA7 LINE L1 -1305 4986 4547 2385 157 42 0 chr11 52703437 52703908 -98079645 + L1 LINE L1 4095 4585 -1561 369 288 54 0 chr11 52704345 52704456 -98079097 - MLT1J LTR MaLR -394 117 1 304 231 0 15 chr11 52704459 52704524 -98079029 + MIR SINE MIR 196 259 -3 22 0 0 0 chr11 52705324 52705346 -98078207 + AT_rich Low_complexity Low_complexity 1 22 0 41 21 0 0 chr11 52705672 52705720 -98077833 + AT_rich Low_complexity Low_complexity 1 48 0 1475 187 40 75 chr11 52706099 52706500 -98077053 - MLT1B LTR MaLR -3 387 1 902 208 50 15 chr11 52707535 52707795 -98075758 - LTR37B LTR ERV1 -2 466 198 279 266 53 11 chr11 52708035 52708129 -98075424 - LTR37B LTR ERV1 -369 99 2 1086 325 15 32 chr11 52708354 52708818 -98074735 + L1M3a LINE L1 10 465 -5490 1098 263 71 74 chr11 52709822 52710469 -98073084 + L1MA6 LINE L1 1784 2428 -4137 11402 196 82 34 chr11 52710476 52712244 -98071309 + L1MA6 LINE L1 2689 4371 -3348 1994 130 63 14 chr11 52712244 52712591 -98070962 + THE1B LTR MaLR 1 364 0 11402 196 82 34 chr11 52712591 52715630 -98067923 + L1MA6 LINE L1 4371 7718 -1 181 308 48 39 chr11 52715755 52715859 -98067694 - MIR SINE MIR -138 124 20 200 308 88 11 chr11 52716222 52716313 -98067240 + MIR SINE MIR 16 113 -95 200 382 15 0 chr11 52716869 52716937 -98066616 - L3b LINE CR1 -9 1574 1506 365 190 50 45 chr11 52717647 52717826 -98065727 + (TA)n Simple_repeat Simple_repeat 1 180 0 258 41 41 20 chr11 52718106 52718155 -98065398 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 3635 24 0 0 chr11 52718155 52718578 -98064975 - L1PA3 LINE L1 -24 6131 5709 189 0 0 0 chr11 52719088 52719109 -98064444 + (TA)n Simple_repeat Simple_repeat 1 21 0 7054 47 6 0 chr11 52719109 52720643 -98062910 - L1PA5 LINE L1 -3 6151 4613 967 27 0 0 chr11 52720643 52720754 -98062799 + L1PA5 LINE L1 4510 4620 -1526 10573 143 60 77 chr11 52721780 52723963 -98059590 - Tigger1 DNA MER2_type 0 2418 273 319 364 58 12 chr11 52724700 52724958 -98058595 + L1M4 LINE L1 4781 5050 -1096 239 143 0 0 chr11 52725191 52725240 -98058313 - LTR66 LTR ERVL -168 442 394 600 200 0 0 chr11 52725240 52725365 -98058188 + (TA)n Simple_repeat Simple_repeat 1 125 0 228 194 32 16 chr11 52725365 52725427 -98058126 - L1MCa LINE L1 -4358 2068 2006 * 264 266 0 21 chr11 52725372 52725466 -98058087 + L1MC4 LINE L1 6614 6705 -1337 242 128 43 0 chr11 52725466 52725513 -98058040 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 624 163 0 49 chr11 52725513 52725636 -98057917 + Tigger2a DNA MER2_type 1 117 -317 255 250 36 0 chr11 52725650 52725734 -98057819 + L1MC4a LINE L1 5918 6004 -1804 1237 273 72 17 chr11 52725738 52726591 -98056962 - L1ME LINE L1 -420 5815 4914 * 2058 203 2 0 chr11 52726587 52726995 -98056558 + L1P LINE L1 1951 2359 -3787 1232 132 11 0 chr11 52726998 52727188 -98056365 + HSMAR1 DNA Mariner 1096 1287 0 1827 265 96 31 chr11 52727384 52728810 -98054743 - L1MEc LINE L1 -2874 3341 1852 560 299 37 23 chr11 52728988 52729336 -98054217 - L1MEc LINE L1 -4637 1759 1407 1757 269 60 19 chr11 52729412 52730210 -98053343 - L1MEc LINE L1 -5176 1220 390 4266 200 52 13 chr11 52730229 52731088 -98052465 - MER54A LTR ERVL 0 901 9 453 332 47 37 chr11 52731105 52731427 -98052126 - L1MEc LINE L1 -6016 380 56 253 335 45 28 chr11 52731447 52731623 -98051930 + MIR SINE MIR 78 256 -6 1253 234 176 19 chr11 52731963 52732429 -98051124 + MLT1F LTR MaLR 3 541 -1 247 297 69 48 chr11 52732535 52732680 -98050873 + MLT1-int LTR MaLR 458 605 -766 300 364 12 6 chr11 52732873 52733035 -98050518 + MLT1-int LTR MaLR 718 880 -491 618 251 6 24 chr11 52733357 52733524 -98050029 + MLT1F1 LTR MaLR 1 164 -378 234 0 0 0 chr11 52733529 52733555 -98049998 + (TC)n Simple_repeat Simple_repeat 1 26 0 758 237 27 23 chr11 52733579 52733798 -98049755 + MLT1F1 LTR MaLR 348 567 0 1781 120 33 4 chr11 52733885 52734190 -98049363 + AluSx SINE Alu 1 313 0 180 324 44 0 chr11 52734618 52734686 -98048867 + L2 LINE L2 3242 3312 -1 545 286 63 39 chr11 52735550 52735805 -98047748 + MIR SINE MIR 2 262 0 320 228 21 83 chr11 52735968 52736113 -98047440 + MLT1L LTR MaLR 480 615 0 363 328 46 0 chr11 52736336 52736467 -98047086 + MIR SINE MIR 119 255 -7 735 182 8 0 chr11 52736677 52736809 -98046744 - FLAM_C SINE Alu -8 135 3 452 345 59 8 chr11 52737274 52737512 -98046041 + MIR SINE MIR 8 257 -5 290 291 25 0 chr11 52739136 52739215 -98044338 - L2 LINE L2 0 3313 3233 468 286 97 56 chr11 52740268 52740537 -98043016 + L2 LINE L2 3029 3308 -5 433 349 41 6 chr11 52740741 52740913 -98042640 - MER5A DNA MER1_type -5 184 7 219 191 16 63 chr11 52741252 52741315 -98042238 - MIR SINE MIR -89 173 114 232 286 135 30 chr11 52741356 52741489 -98042064 - MIR SINE MIR -97 165 19 320 314 25 0 chr11 52741766 52741884 -98041669 - L1ME1 LINE L1 -5 6161 6041 22 35 0 0 chr11 52742028 52742057 -98041496 + AT_rich Low_complexity Low_complexity 1 29 0 240 333 0 0 chr11 52742073 52742139 -98041414 - MER96 DNA MER1_type? -99 76 11 886 283 70 45 chr11 52742144 52742727 -98040826 - L1M4 LINE L1 -1798 4348 3751 1433 246 114 27 chr11 52742781 52743629 -98039924 + L1MC4a LINE L1 2380 3301 -2845 5231 212 52 25 chr11 52743703 52745929 -98037624 - L1MB2 LINE L1 -3 6404 4109 1520 255 98 10 chr11 52745933 52746961 -98036592 - L1MB2 LINE L1 -3760 2622 1457 1754 184 20 3 chr11 52746969 52747323 -98036230 - L1MA5 LINE L1 -2 6298 5939 997 148 27 118 chr11 52747323 52747446 -98036107 + L1MA5 LINE L1 5701 5789 -511 207 0 0 0 chr11 52747446 52747469 -98036084 + (CA)n Simple_repeat Simple_repeat 2 24 0 997 148 27 118 chr11 52747469 52747608 -98035945 + L1MA5 LINE L1 5789 5939 -361 3409 254 33 20 chr11 52747608 52748629 -98034924 - L1M2c LINE L1 -4521 2268 1234 2143 106 0 0 chr11 52748666 52748949 -98034604 + AluSc SINE Alu 21 303 -6 237 273 0 15 chr11 52751108 52751174 -98032379 + GA-rich Low_complexity Low_complexity 4 68 0 420 359 41 0 chr11 52751507 52751702 -98031851 - MIR SINE MIR -16 246 44 22 0 0 0 chr11 52751907 52751929 -98031624 + AT_rich Low_complexity Low_complexity 1 22 0 315 227 57 71 chr11 52752691 52752832 -98030721 - MER74B LTR ERVL -23 599 461 449 269 6 0 chr11 52752859 52753019 -98030534 + (TA)n Simple_repeat Simple_repeat 2 162 0 349 323 0 11 chr11 52753732 52753825 -98029728 - L2 LINE L2 -195 3077 2986 364 169 67 0 chr11 52754637 52754726 -98028827 + L1MB4 LINE L1 6085 6179 -1 342 274 85 44 chr11 52754998 52755217 -98028336 + L1MC4a LINE L1 4009 4239 -1907 228 67 0 0 chr11 52755577 52755607 -98027946 + (T)n Simple_repeat Simple_repeat 1 30 0 394 37 19 0 chr11 52755690 52755744 -98027809 - MLT2A1 LTR ERVL 0 444 390 363 192 20 50 chr11 52755751 52755850 -98027703 - L1MC4 LINE L1 -1340 6702 6607 2910 87 15 0 chr11 52755927 52756320 -98027233 - MLT2A1 LTR ERVL -45 399 1 781 237 54 5 chr11 52756434 52756620 -98026933 - MER20 DNA MER1_type -24 195 1 399 290 70 57 chr11 52756624 52756996 -98026557 + L1MC4a LINE L1 4824 5200 -946 314 350 43 0 chr11 52757115 52757278 -98026275 + L1MC4a LINE L1 5345 5514 -2294 356 301 218 19 chr11 52757431 52757697 -98025856 + L1MC4a LINE L1 5625 5943 -1865 4927 60 222 8 chr11 52758186 52758951 -98024602 + L1P LINE L1 1419 2347 -3799 244 259 35 35 chr11 52759061 52759146 -98024407 - L2 LINE L2 0 3313 3229 334 353 13 6 chr11 52760231 52760387 -98023166 + CT-rich Low_complexity Low_complexity 4 160 0 24 32 0 0 chr11 52760475 52760506 -98023047 + AT_rich Low_complexity Low_complexity 1 31 0 1422 201 17 14 chr11 52761994 52762283 -98021270 + AluJo SINE Alu 1 290 -22 558 262 94 20 chr11 52762654 52762898 -98020655 - MIR SINE MIR 0 262 1 342 298 78 14 chr11 52762899 52763040 -98020513 - MIR SINE MIR -18 244 95 264 260 135 0 chr11 52763843 52763947 -98019606 - MIR SINE MIR -22 240 123 195 259 123 0 chr11 52764214 52764295 -98019258 - MIR SINE MIR -116 146 56 249 329 43 56 chr11 52765147 52765308 -98018245 + L2 LINE L2 2866 3024 -248 362 287 52 17 chr11 52765521 52765636 -98017917 + L2 LINE L2 3154 3272 0 770 279 171 3 chr11 52766145 52766461 -98017092 - L2 LINE L2 -523 2791 2423 195 42 0 0 chr11 52767263 52767287 -98016266 + (TTTC)n Simple_repeat Simple_repeat 3 26 0 207 289 0 33 chr11 52768402 52768492 -98015061 + (CCG)n Simple_repeat Simple_repeat 3 89 0 387 0 0 0 chr11 52769077 52769120 -98014433 + (TG)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chr11 52769458 52769478 -98014075 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 360 0 0 0 chr11 52769477 52769517 -98014036 + (CA)n Simple_repeat Simple_repeat 1 40 0 261 0 0 0 chr11 52769516 52769545 -98014008 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 210 264 33 55 chr11 52769705 52769796 -98013757 + MIR SINE MIR 86 175 -33 267 133 145 36 chr11 52770087 52770170 -98013383 - L1PA6 LINE L1 0 6154 6063 230 320 144 8 chr11 52773806 52773931 -98009622 - MIR SINE MIR -2 260 119 297 0 0 0 chr11 52774098 52774131 -98009422 + (TG)n Simple_repeat Simple_repeat 2 34 0 652 261 30 73 chr11 52774328 52774524 -98009029 + MIR SINE MIR 15 201 -61 617 126 0 29 chr11 52774524 52774627 -98008926 + L1PA8A LINE L1 6031 6130 -1 652 261 30 73 chr11 52774627 52774664 -98008889 + MIR SINE MIR 201 238 -24 332 299 49 54 chr11 52774706 52774890 -98008663 - MIR SINE MIR -45 217 35 21 0 0 0 chr11 52775468 52775489 -98008064 + AT_rich Low_complexity Low_complexity 1 21 0 1010 218 14 9 chr11 52775932 52776148 -98007405 + MER20 DNA MER1_type 2 218 -1 453 265 32 65 chr11 52776341 52776526 -98007027 + MIR SINE MIR 23 201 -61 311 246 44 35 chr11 52778266 52778380 -98005173 + L1MC/D LINE L1 5701 5815 -1993 471 329 43 19 chr11 52778393 52778603 -98004950 + MIR SINE MIR 48 262 0 41 0 0 0 chr11 52778690 52778731 -98004822 + AT_rich Low_complexity Low_complexity 1 41 0 626 272 49 0 chr11 52779048 52779232 -98004321 - MIR SINE MIR -64 198 6 254 269 92 15 chr11 52779466 52779596 -98003957 - L1ME4a LINE L1 -41 6080 5941 1847 311 71 35 chr11 52779720 52780883 -98002670 + L2 LINE L2 2073 3266 -47 333 339 60 30 chr11 52781390 52781527 -98002026 + MIR SINE MIR 13 157 -105 912 230 25 21 chr11 52781527 52781762 -98001791 + MER46A DNA MER2_type 1 236 0 333 339 60 30 chr11 52781762 52781792 -98001761 + MIR SINE MIR 157 185 -77 1477 321 98 38 chr11 52781957 52782682 -98000871 + L2 LINE L2 1995 2776 -538 2172 106 0 0 chr11 52782682 52782975 -98000578 - AluSx SINE Alu -19 293 1 1477 321 98 38 chr11 52782975 52783068 -98000485 + L2 LINE L2 2776 2862 -452 1090 63 0 7 chr11 52783129 52783272 -98000281 - AluY SINE Alu -10 301 160 3532 104 25 29 chr11 52783275 52783834 -97999719 - L1PA13 LINE L1 0 6163 5607 649 84 0 0 chr11 52783837 52783920 -97999633 + L1PA13 LINE L1 5541 5623 -545 293 300 58 25 chr11 52783971 52784091 -97999462 + L2 LINE L2 3190 3313 0 284 357 51 0 chr11 52787164 52787262 -97996291 - L2 LINE L2 -1 3271 3169 411 101 89 173 chr11 52787755 52787923 -97995630 - MER53 DNA DNA -27 162 9 205 135 39 0 chr11 52788072 52788124 -97995429 + (TA)n Simple_repeat Simple_repeat 1 54 0 6796 47 103 0 chr11 52788163 52789123 -97994430 - L1PA5 LINE L1 0 6154 5189 1733 119 0 31 chr11 52789123 52789409 -97994144 + L1P LINE L1 1139 1415 -4731 205 268 14 42 chr11 52789608 52789679 -97993874 + MIR3 SINE MIR 87 155 -53 395 299 121 62 chr11 52790064 52790288 -97993265 + MIR SINE MIR 20 256 -6 386 265 53 0 chr11 52790308 52790446 -97993107 - MIR3 SINE MIR -54 154 8 242 222 12 62 chr11 52790689 52790770 -97992783 - MIR SINE MIR -10 252 176 23 33 0 0 chr11 52790811 52790841 -97992712 + AT_rich Low_complexity Low_complexity 1 30 0 453 215 141 0 chr11 52792256 52792377 -97991176 - MIR SINE MIR -25 237 100 2865 75 22 10 chr11 52793536 52793938 -97989615 + L1PA7 LINE L1 5743 6149 -5 1434 196 3 42 chr11 52794119 52794425 -97989128 - AluJb SINE Alu -15 297 4 650 207 99 91 chr11 52794535 52794897 -97988656 - MLT1A1 LTR MaLR 0 365 1 1734 121 0 141 chr11 52795324 52795679 -97987874 + AluSc SINE Alu 1 305 -4 323 305 107 32 chr11 52796114 52796301 -97987252 - MIR SINE MIR -56 206 6 3480 180 34 1 chr11 52796433 52797082 -97986471 - L1PA15 LINE L1 0 6165 5496 1756 144 54 0 chr11 52798505 52798782 -97984771 - AluSx SINE Alu -20 292 1 1566 167 13 29 chr11 52798822 52799128 -97984425 - AluSg SINE Alu -9 301 1 243 0 0 0 chr11 52799526 52799553 -97984000 + (CA)n Simple_repeat Simple_repeat 1 27 0 495 204 20 10 chr11 52799651 52799749 -97983804 + MER5A DNA MER1_type 24 122 -67 341 254 118 9 chr11 52799656 52799766 -97983787 - MER5A DNA MER1_type -18 171 50 * 225 65 0 0 chr11 52800005 52800036 -97983517 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1983 115 0 27 chr11 52800037 52800332 -97983221 - AluSg SINE Alu -23 287 1 358 295 84 30 chr11 52800666 52800832 -97982721 + L2 LINE L2 3106 3280 -33 1586 135 7 77 chr11 52901245 52901519 -97882034 + AluSq SINE Alu 1 255 -58 308 111 19 0 chr11 52901525 52901579 -97881974 + (GA)n Simple_repeat Simple_repeat 1 55 0 588 29 0 0 chr11 52901594 52901664 -97881889 + (GAAA)n Simple_repeat Simple_repeat 4 73 0 1371 182 71 0 chr11 52903866 52904119 -97879434 + AluSg SINE Alu 1 271 -39 758 113 7 27 chr11 52904119 52904269 -97879284 + (GAAA)n Simple_repeat Simple_repeat 4 150 0 11894 101 20 0 chr11 52904452 52906199 -97877354 - L1P LINE L1 -4366 1780 2 8419 158 57 11 chr11 52906201 52908717 -97874836 - L1PBa LINE L1 -2927 3935 1312 934 211 33 0 chr11 52908937 52909117 -97874436 + AluJb SINE Alu 127 312 0 215 298 183 15 chr11 52909614 52909745 -97873808 + L2 LINE L2 3110 3262 -10 1043 158 11 6 chr11 52910033 52910216 -97873337 - L1PA16 LINE L1 -3 6163 5980 27 0 0 0 chr11 52910430 52910457 -97873096 + AT_rich Low_complexity Low_complexity 1 27 0 7354 43 0 2 chr11 52910457 52911703 -97871850 - L1PA4 LINE L1 -3 6152 4908 680 127 8 0 chr11 52912079 52912197 -97871356 + L1P LINE L1 5310 5428 -733 5210 99 21 9 chr11 52912197 52912943 -97870610 + SVA Other Other 632 1386 0 726 291 135 25 chr11 52913177 52913604 -97869949 + L2 LINE L2 2794 3255 -58 260 304 36 0 chr11 52913773 52913885 -97869668 - LTR67 LTR ERVL 0 557 442 1497 195 64 64 chr11 52914301 52914782 -97868771 - L1MA9 LINE L1 -38 6274 5794 189 107 36 18 chr11 52914787 52914843 -97868710 + (TATAA)n Simple_repeat Simple_repeat 4 60 0 222 184 10 68 chr11 52914865 52914968 -97868585 + (TATAA)n Simple_repeat Simple_repeat 5 101 0 2400 184 14 30 chr11 52914996 52915927 -97867626 - L1MA9 LINE L1 -544 5768 4859 2078 127 3 3 chr11 52915927 52916227 -97867326 + AluSx SINE Alu 1 300 -12 2400 184 14 30 chr11 52916227 52916352 -97867201 - L1MA9 LINE L1 -1453 4859 4734 1289 169 0 0 chr11 52916361 52916614 -97866939 - AluSg/x SINE Alu 0 339 87 252 277 36 54 chr11 52917026 52917138 -97866415 + MIR SINE MIR 136 245 -17 21 0 0 0 chr11 52917406 52917427 -97866126 + AT_rich Low_complexity Low_complexity 1 21 0 2480 77 0 3 chr11 52917977 52918287 -97865266 - AluSc SINE Alu 0 309 1 358 223 56 64 chr11 52918295 52918528 -97865025 - L1ME4a LINE L1 -185 5936 5706 2462 89 0 0 chr11 52918927 52919231 -97864322 + AluSx SINE Alu 1 304 -8 1049 307 68 14 chr11 52919402 52919842 -97863711 - LTR16B LTR ERVL 0 464 1 806 256 48 34 chr11 52920210 52920503 -97863050 + L1ME LINE L1 5447 5743 -421 572 241 307 3 chr11 52920654 52920999 -97862554 + SATR1 Satellite Satellite 6 455 -15 255 288 144 9 chr11 52921023 52921134 -97862419 + SATR1 Satellite Satellite 301 426 -44 936 195 286 29 chr11 52921174 52921756 -97861797 + SATR1 Satellite Satellite 1 731 -147 2189 92 3 0 chr11 52922219 52922512 -97861041 + AluSp SINE Alu 1 294 -19 1547 155 0 81 chr11 52928390 52928687 -97854866 + AluSx SINE Alu 1 273 -39 337 169 11 11 chr11 52928687 52928776 -97854777 + GA-rich Low_complexity Low_complexity 1 89 0 30223 49 2 1 chr11 52930910 52935686 -97847867 - L1PA6 LINE L1 -6 6148 1368 435 252 76 0 chr11 52935873 52936004 -97847549 + L1M4 LINE L1 2986 3126 -3020 3069 150 7 16 chr11 52936113 52936661 -97846892 - L1PBa LINE L1 -5687 1176 634 885 205 26 0 chr11 52936661 52936856 -97846697 - L1PBa LINE L1 -6663 200 1 2376 201 30 69 chr11 52936907 52937544 -97846009 - LTR9 LTR ERV1 0 612 1 2192 217 34 39 chr11 52937546 52938247 -97845306 - LTR9-int LTR ERV1 -1 6995 6298 * 9234 144 43 91 chr11 52938239 52940436 -97843117 - HUERS-P3b LTR ERV1 -2303 2914 1335 3232 192 53 15 chr11 52940436 52941102 -97842451 + LTR8 LTR ERV1 1 691 0 9234 144 43 91 chr11 52941102 52941797 -97841756 - HUERS-P3b LTR ERV1 -3882 1335 608 3932 193 41 37 chr11 52941801 52943446 -97840107 - HUERS-P3b LTR ERV1 -5694 1724 69 10124 132 24 76 chr11 52943547 52945688 -97837865 - L1M1 LINE L1 -4182 3383 1355 457 182 8 58 chr11 52945688 52945809 -97837744 - L1M1 LINE L1 -7410 155 41 4160 230 78 40 chr11 52946167 52946842 -97836711 + L1M4 LINE L1 281 929 -5717 1652 209 14 16 chr11 52946842 52947206 -97836347 - MLT1A1 LTR MaLR 0 365 3 4160 230 78 40 chr11 52947206 52948291 -97835262 + L1M4 LINE L1 929 2096 -4550 771 236 0 50 chr11 52948534 52948776 -97834777 + L1M4 LINE L1 2695 2924 -3720 938 168 15 35 chr11 52948782 52948979 -97834574 - MLT1A1 LTR MaLR -48 317 125 4632 211 39 29 chr11 52948992 52950424 -97833129 + L1M4 LINE L1 2933 4379 -2265 223 290 70 50 chr11 52952630 52952730 -97830823 + MIR SINE MIR 45 146 -62 388 314 29 0 chr11 52953159 52953296 -97830257 + MIR SINE MIR 122 262 0 21 36 0 0 chr11 52954923 52954951 -97828602 + AT_rich Low_complexity Low_complexity 1 28 0 373 291 129 37 chr11 52956914 52957155 -97826398 - LTR41 LTR ERVL -10 763 501 1791 120 7 3 chr11 52958550 52958833 -97824720 - L1PB1 LINE L1 -2 6149 5866 1629 171 43 14 chr11 52958921 52959266 -97824287 - L1MA9 LINE L1 -8 6304 5950 1026 273 109 14 chr11 52959523 52959937 -97823616 - LTR16A1 LTR ERVL -4 453 1 377 368 53 18 chr11 52959942 52960225 -97823328 + L2 LINE L2 2561 2853 -461 249 273 0 30 chr11 52960241 52960307 -97823246 + L2 LINE L2 3207 3270 -2 2302 110 0 0 chr11 52960446 52960754 -97822799 - AluSg SINE Alu -2 308 1 2846 16 3 0 chr11 52960824 52961141 -97822412 - AluYb8 SINE Alu 0 318 1 297 127 36 0 chr11 52961212 52961267 -97822286 + L1MA10 LINE L1 6265 6321 -13 36 0 0 0 chr11 52961941 52961977 -97821576 + AT_rich Low_complexity Low_complexity 1 36 0 278 248 89 0 chr11 52961977 52962078 -97821475 - L1MA9 LINE L1 -22 6290 6181 1332 187 11 30 chr11 52962080 52962347 -97821206 - L1MA9 LINE L1 -230 6082 5821 788 219 89 45 chr11 52962360 52963266 -97820287 - L1M4c LINE L1 -1099 6007 4995 436 275 50 33 chr11 52963338 52963569 -97819984 - L1M4c LINE L1 -2877 4229 3987 1978 114 33 0 chr11 52963569 52963892 -97819661 - AluSg SINE Alu 0 332 1 436 275 50 33 chr11 52963892 52964023 -97819530 - L1M4c LINE L1 -3119 3987 3860 2459 225 76 19 chr11 52964190 52964995 -97818558 - L1MB5 LINE L1 -226 5948 5097 464 176 0 0 chr11 52965154 52965245 -97818308 - L1MB5 LINE L1 -1597 4549 4459 743 144 16 8 chr11 52965276 52965401 -97818152 + L1P4 LINE L1 5475 5600 -566 358 294 7 7 chr11 52965409 52965562 -97817991 - L1PB4 LINE L1 -3 6153 6001 14565 55 5 1 chr11 52965812 52967689 -97815864 + L1P LINE L1 2817 4701 -1445 3574 199 51 1 chr11 52967715 52968955 -97814598 - L1MA9 LINE L1 -200 6112 4819 2280 250 78 49 chr11 52968951 52970927 -97812626 - L1M4c LINE L1 -4516 2521 934 * 912 245 28 18 chr11 52970965 52971233 -97812320 - L1M3c LINE L1 -5860 1177 21 2175 87 31 3 chr11 52971244 52971531 -97812022 - AluY SINE Alu -16 295 1 1426 225 31 7 chr11 52971531 52971954 -97811599 - L1M4 LINE L1 -814 5332 4900 441 263 0 0 chr11 52972350 52972464 -97811089 + L1P4 LINE L1 5487 5600 -566 1206 183 8 4 chr11 52972478 52972713 -97810840 - L1PB4 LINE L1 -10 6146 5911 1825 80 0 0 chr11 52972716 52972953 -97810600 + L1PA7 LINE L1 5918 6154 0 5294 182 55 33 chr11 52972986 52973114 -97810439 - L1PB4 LINE L1 -234 5922 5798 309 26 0 0 chr11 52973114 52973152 -97810401 + (TG)n Simple_repeat Simple_repeat 2 39 0 5294 182 55 33 chr11 52973152 52974921 -97808632 - L1PB4 LINE L1 -358 5798 3980 22298 83 81 86 chr11 52974948 52978104 -97805449 - L1P2 LINE L1 -338 5817 2312 2669 125 0 3 chr11 52978104 52978487 -97805066 - MER9 LTR ERVK -129 382 1 22298 83 81 86 chr11 52978487 52979865 -97803688 - L1P2 LINE L1 -3843 2312 928 3949 217 43 65 chr11 52979992 52980304 -97803249 - L1M4 LINE L1 -1344 4802 4484 2225 109 3 13 chr11 52980304 52980615 -97802938 - AluSp SINE Alu -5 308 1 3949 217 43 65 chr11 52980615 52981633 -97801920 - L1M4 LINE L1 -1662 4484 3502 831 151 59 7 chr11 52981634 52981786 -97801767 + MLT1A1 LTR MaLR 1 160 -205 808 181 32 13 chr11 52981787 52981942 -97801611 - L1MCa LINE L1 -5825 601 444 1722 184 46 65 chr11 52982074 52982508 -97801045 - L1MCa LINE L1 -6000 426 1 207 326 139 79 chr11 52982579 52983011 -97800542 + L2 LINE L2 2856 3313 0 22040 47 2 0 chr11 52983514 52987089 -97796464 + L1PA3 LINE L1 2595 6175 0 514 323 115 78 chr11 52988107 52988795 -97794758 - L2 LINE L2 -384 2930 2218 1288 242 20 70 chr11 52988920 52989317 -97794236 + MLT1B LTR MaLR 14 390 0 1651 182 17 8 chr11 52989319 52989677 -97793876 + MLT1B-int LTR MaLR 3 363 -1008 703 200 0 7 chr11 52990092 52990227 -97793326 + L1 LINE L1 4868 5001 -1145 211 313 125 8 chr11 52990227 52990355 -97793198 + L2 LINE L2 2935 3077 -195 604 327 112 20 chr11 52992165 52992616 -97790937 - L2 LINE L2 -344 2928 2434 320 350 70 7 chr11 52992796 52992939 -97790614 + L2 LINE L2 2927 3078 -194 1240 165 84 7 chr11 52993105 52993378 -97790175 + L1MA4 LINE L1 5825 6118 -182 300 316 101 25 chr11 52993416 52993853 -97789700 - L1P4 LINE L1 -441 5724 5255 230 239 52 30 chr11 52994043 52994177 -97789376 - L1 LINE L1 -1126 5020 4884 3523 58 5 9 chr11 52994410 52994841 -97788712 + SVA Other Other 958 1386 0 4258 121 34 31 chr11 52994843 52995587 -97787966 + L1PA13 LINE L1 5413 6158 -5 435 218 43 1 chr11 52996195 52996362 -97787191 - L1ME LINE L1 -549 5615 5391 484 250 55 0 chr11 52996411 52996575 -97786978 - L1ME LINE L1 -855 5291 5119 10374 184 41 72 chr11 52996580 52999396 -97784157 + L1MA2 LINE L1 2572 5300 -846 2132 145 0 0 chr11 52999396 52999700 -97783853 + AluSq SINE Alu 1 304 -9 10374 184 41 72 chr11 52999700 52999731 -97783822 + L1MA2 LINE L1 5300 5330 -816 4663 146 5 8 chr11 52999736 53000524 -97783029 + L1MA2 LINE L1 5519 6304 0 395 204 14 35 chr11 53000618 53000760 -97782793 + C-rich Low_complexity Low_complexity 3 141 0 998 181 0 6 chr11 53000761 53000943 -97782610 + L1 LINE L1 4833 5013 -1133 223 61 61 41 chr11 53000947 53000996 -97782557 + CT-rich Low_complexity Low_complexity 3 52 0 478 265 10 0 chr11 53000998 53001100 -97782453 - FLAM_A SINE Alu -36 106 4 752 146 14 35 chr11 53001147 53001291 -97782262 + THE1C-int LTR MaLR 1440 1580 0 2076 135 32 27 chr11 53001293 53001664 -97781889 + THE1C LTR MaLR 3 375 0 229 216 0 0 chr11 53004336 53004387 -97779166 + T-rich Low_complexity Low_complexity 1 51 0 1111 162 12 0 chr11 53004533 53004706 -97778847 - AluSg/x SINE Alu -7 305 131 625 248 21 110 chr11 53005090 53005372 -97778181 - MIR SINE MIR -1 261 5 27 29 0 0 chr11 53005505 53005539 -97778014 + AT_rich Low_complexity Low_complexity 1 34 0 198 323 32 0 chr11 53005599 53005661 -97777892 - MIR3 SINE MIR -27 181 118 206 281 58 66 chr11 53006298 53006419 -97777134 + L2 LINE L2 3150 3269 -44 180 349 143 0 chr11 53006586 53006649 -97776904 - L2 LINE L2 -8 3305 3234 730 161 0 0 chr11 53008558 53008688 -97774865 + L1P LINE L1 4735 4864 -1282 28 48 0 0 chr11 53008996 53009038 -97774515 + AT_rich Low_complexity Low_complexity 1 42 0 274 323 30 0 chr11 53010593 53010692 -97772861 - ERVL LTR ERVL -1090 4674 4573 285 241 133 25 chr11 53010809 53010967 -97772586 - ERVL LTR ERVL -1090 4395 4221 552 330 37 20 chr11 53011018 53011366 -97772187 - ERVL LTR ERVL -1631 4133 3780 1959 175 36 10 chr11 53011488 53011899 -97771654 - L1MA9 LINE L1 0 6312 5891 924 191 88 5 chr11 53011899 53012114 -97771439 + L1M2 LINE L1 5511 5743 -569 518 273 7 0 chr11 53012742 53012885 -97770668 - MER5A DNA MER1_type -40 149 6 2328 75 3 0 chr11 53014332 53014626 -97768927 + AluSp SINE Alu 1 295 -18 1514 158 8 45 chr11 53020455 53020720 -97762833 + AluSq SINE Alu 1 255 -58 385 138 25 0 chr11 53020732 53020812 -97762741 + GA-rich Low_complexity Low_complexity 1 82 0 1464 5 0 22 chr11 53020816 53021000 -97762553 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1361 195 99 0 chr11 53023222 53023550 -97760003 + AluSg SINE Alu 1 355 0 209 110 100 0 chr11 53025037 53025137 -97758416 + (TA)n Simple_repeat Simple_repeat 1 110 0 303 173 0 0 chr11 53025148 53025200 -97758353 - L1MC4 LINE L1 -1339 6703 6652 673 258 0 26 chr11 53025200 53025351 -97758202 - AluJo SINE Alu -39 273 127 317 310 67 27 chr11 53026068 53026296 -97757257 + L1MEc LINE L1 1449 1834 -4729 705 287 129 57 chr11 53026364 53026959 -97756594 - L1MCc LINE L1 -4997 1426 789 2840 70 5 0 chr11 53027146 53027520 -97756033 + L1PA7 LINE L1 5776 6151 -3 394 307 97 3 chr11 53027777 53028126 -97755427 - L1ME3A LINE L1 -192 5978 5597 479 296 90 23 chr11 53028132 53028586 -97754967 - L1ME3A LINE L1 -593 5569 5083 249 227 0 0 chr11 53028650 53028716 -97754837 - L1ME3A LINE L1 -1166 4980 4915 24 0 0 0 chr11 53029808 53029832 -97753721 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr11 53031490 53031511 -97752042 + AT_rich Low_complexity Low_complexity 1 21 0 251 130 19 0 chr11 53031674 53031728 -97751825 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr11 53032786 53032807 -97750746 + AT_rich Low_complexity Low_complexity 1 21 0 302 319 33 130 chr11 53032860 53033452 -97750101 - L2 LINE L2 -15 3298 2756 385 214 0 0 chr11 53034556 53034640 -97748913 - MLT2B3 LTR ERVL -470 84 1 21 0 0 0 chr11 53034863 53034884 -97748669 + AT_rich Low_complexity Low_complexity 1 21 0 4556 47 0 0 chr11 53034884 53035442 -97748111 - L1PA4 LINE L1 -2 6153 5596 3413 203 32 31 chr11 53037381 53038150 -97745403 - L1M1 LINE L1 -6747 818 49 22 0 0 0 chr11 53038502 53038524 -97745029 + AT_rich Low_complexity Low_complexity 1 22 0 1750 149 12 3 chr11 53039850 53040178 -97743375 - L1M1 LINE L1 -526 5774 5444 3176 184 148 11 chr11 53040363 53041104 -97742449 - MST-int LTR MaLR -45 1606 764 569 245 59 37 chr11 53041102 53041542 -97742011 - L1PA15-16 LINE L1 -5021 1182 690 * 378 358 52 47 chr11 53041759 53041991 -97741562 - L1M2 LINE L1 -5933 916 684 1765 285 169 16 chr11 53042249 53043071 -97740482 - L1M2 LINE L1 -5893 956 9 1350 254 42 36 chr11 53043120 53043545 -97740008 - L1M4 LINE L1 -1868 4278 3848 1726 172 10 7 chr11 53043545 53043842 -97739711 - AluJb SINE Alu -14 298 1 1350 254 42 36 chr11 53043842 53044019 -97739534 - L1M4 LINE L1 -2298 3848 3673 258 32 0 0 chr11 53044194 53044225 -97739328 + (TG)n Simple_repeat Simple_repeat 2 32 0 812 109 0 0 chr11 53044244 53044372 -97739181 + L1MA5A LINE L1 6164 6291 -6 394 215 73 8 chr11 53044394 53044545 -97739008 - L1M4 LINE L1 -742 5432 5266 766 292 39 16 chr11 53044771 53045315 -97738238 - L1M4 LINE L1 -2897 3249 2694 911 206 132 9 chr11 53045557 53045785 -97737768 - ERVL LTR ERVL -4846 918 663 561 274 92 58 chr11 53045929 53046364 -97737189 - LTR16A1 LTR ERVL 0 457 8 270 369 65 55 chr11 53046390 53046699 -97736854 + L2 LINE L2 2576 2887 -427 220 239 0 0 chr11 53046685 53046731 -97736822 + L2 LINE L2 3268 3313 0 * 2208 138 0 0 chr11 53046891 53047203 -97736350 - AluSx SINE Alu 0 312 1 225 302 20 74 chr11 53047284 53047486 -97736067 + L2 LINE L2 3123 3313 0 1851 133 57 0 chr11 53047567 53047846 -97735707 + AluSc SINE Alu 1 295 -14 300 213 75 0 chr11 53048730 53048810 -97734743 + MIR SINE MIR 119 204 -58 478 279 84 32 chr11 53050865 53051055 -97732498 - MIR SINE MIR 0 262 63 325 384 68 5 chr11 53051406 53051596 -97731957 + MIR SINE MIR 1 202 -60 214 274 0 63 chr11 53051980 53052075 -97731478 + MIR SINE MIR 96 184 -78 414 0 0 0 chr11 53052386 53052432 -97731121 + (CA)n Simple_repeat Simple_repeat 1 46 0 638 170 47 12 chr11 53053044 53053215 -97730338 - L1MA9 LINE L1 -9 6303 6127 6905 52 1 0 chr11 53053216 53054637 -97728916 - L1PA4 LINE L1 -6 6149 4712 13830 43 8 4 chr11 53054637 53056461 -97727092 + L1PA4 LINE L1 2418 4248 -1898 2716 43 0 0 chr11 53056461 53056783 -97726770 + L1PA4 LINE L1 5828 6151 -4 1991 166 10 0 chr11 53056824 53057131 -97726422 + AluSx SINE Alu 1 310 -2 1921 234 71 2 chr11 53057131 53057581 -97725972 + L1P LINE L1 3219 3719 -2427 239 0 32 0 chr11 53057581 53057612 -97725941 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1921 234 71 2 chr11 53057612 53057710 -97725843 + L1P LINE L1 3719 3809 -2337 1028 221 7 36 chr11 53057718 53057994 -97725559 + MER76 LTR ERV 421 688 0 495 213 22 0 chr11 53057995 53058131 -97725422 - L1M4 LINE L1 -1913 4233 4095 1573 154 11 50 chr11 53058132 53058411 -97725142 + AluJo SINE Alu 1 268 -44 1869 148 16 66 chr11 53058665 53058823 -97724730 + L1PA15 LINE L1 5818 5982 -183 2120 110 14 0 chr11 53058823 53059115 -97724438 + AluSx SINE Alu 3 298 -14 1869 148 16 66 chr11 53059115 53059321 -97724232 + L1PA15 LINE L1 5982 6164 -1 566 243 85 37 chr11 53059539 53059811 -97723742 - MLT1L LTR MaLR -327 288 4 297 326 23 0 chr11 53060017 53060146 -97723407 - MLT1L LTR MaLR -447 168 37 211 329 94 7 chr11 53060221 53060370 -97723183 + L2 LINE L2 1597 1758 -1556 * 474 216 81 0 chr11 53060346 53060457 -97723096 - MIR SINE MIR -64 198 79 444 267 91 28 chr11 53061110 53061286 -97722267 + MIR SINE MIR 6 192 -70 505 234 99 7 chr11 53061657 53061798 -97721755 - MIR SINE MIR -36 226 73 2163 123 7 0 chr11 53061811 53062111 -97721442 + AluSq SINE Alu 1 302 -11 250 268 28 14 chr11 53062218 53062289 -97721264 - MIR SINE MIR -41 221 150 243 0 0 0 chr11 53062738 53062765 -97720788 + (A)n Simple_repeat Simple_repeat 1 27 0 347 287 89 13 chr11 53063543 53063700 -97719853 - L1ME4a LINE L1 0 6121 5953 22 35 0 0 chr11 53064417 53064446 -97719107 + AT_rich Low_complexity Low_complexity 1 29 0 236 261 11 57 chr11 53065021 53065109 -97718444 - MIR SINE MIR -108 154 71 648 229 246 32 chr11 53065401 53066097 -97717456 - SATR1 Satellite Satellite -1 844 1 1500 206 140 0 chr11 53066232 53066626 -97716927 - SATR1 Satellite Satellite -20 450 2 2157 175 109 10 chr11 53066658 53068654 -97714899 - SATR1 Satellite Satellite -3 2192 1 28 48 0 0 chr11 53068654 53068696 -97714857 + AT_rich Low_complexity Low_complexity 1 42 0 356 216 12 43 chr11 53068739 53068901 -97714652 + (TTA)n Simple_repeat Simple_repeat 2 158 0 346 111 74 12 chr11 53069434 53069596 -97713957 + (TA)n Simple_repeat Simple_repeat 1 172 0 301 229 74 25 chr11 53070459 53070581 -97712972 + L1M4 LINE L1 5123 5250 -896 342 0 0 0 chr11 53071911 53071949 -97711604 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 216 122 0 0 chr11 53073773 53073814 -97709739 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1878 139 58 39 chr11 53074055 53074471 -97709082 + L1MA4A LINE L1 5876 6299 -4 22 48 0 48 chr11 53074473 53074535 -97709018 + AT_rich Low_complexity Low_complexity 1 59 0 194 175 18 53 chr11 53075277 53075334 -97708219 - L2 LINE L2 -100 3213 3159 181 311 49 0 chr11 53075699 53075760 -97707793 - L2 LINE L2 -545 2769 2706 733 207 37 6 chr11 53076371 53076535 -97707018 - MER58A DNA MER1_type -9 215 47 222 233 0 0 chr11 53076611 53076671 -97706882 + (TA)n Simple_repeat Simple_repeat 2 61 0 1797 157 26 29 chr11 53076725 53077037 -97706516 + AluSx SINE Alu 1 311 -1 462 214 0 0 chr11 53077199 53077344 -97706209 + G-rich Low_complexity Low_complexity 1 145 0 2218 92 3 0 chr11 53082898 53083191 -97700362 - AluSp SINE Alu -19 294 1 319 287 117 57 chr11 53083554 53083888 -97699665 - L1M2 LINE L1 -5817 1032 679 512 273 7 0 chr11 53084651 53084794 -97698759 + MER5A DNA MER1_type 6 149 -40 24 53 0 0 chr11 53085633 53085671 -97697882 + AT_rich Low_complexity Low_complexity 1 38 0 768 153 15 15 chr11 53085986 53086117 -97697436 - AluSq SINE Alu -159 154 24 1450 217 3 14 chr11 53086684 53086974 -97696579 - AluJo SINE Alu -25 287 1 846 273 80 11 chr11 53087130 53087507 -97696046 - L1MA9 LINE L1 -38 6274 5872 21 0 0 0 chr11 53091457 53091478 -97692075 + AT_rich Low_complexity Low_complexity 1 21 0 1845 128 60 104 chr11 53092784 53093253 -97690300 + LTR7 LTR ERV1 1 448 -2 655 254 0 0 chr11 53094084 53094210 -97689343 + FRAM SINE Alu 1 118 -58 313 103 17 35 chr11 53095401 53095459 -97688094 - MLT2B1 LTR ERVL 0 520 464 * 936 210 80 5 chr11 53095455 53095679 -97687874 + Tigger3(Golem) DNA MER2_type 2786 3026 -3 287 343 37 0 chr11 53095689 53095823 -97687730 - MLT2B3 LTR ERVL -46 508 370 * 1024 191 39 13 chr11 53095803 53096033 -97687520 - MLT2B3 LTR ERVL -314 240 5 303 326 58 64 chr11 53098211 53098524 -97685029 - L2 LINE L2 0 3313 3003 221 231 0 27 chr11 53098598 53098745 -97684808 + (TA)n Simple_repeat Simple_repeat 2 144 0 223 335 47 17 chr11 53098745 53098862 -97684691 - L2 LINE L2 -309 2963 2854 199 122 41 0 chr11 53100499 53100548 -97683005 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 23 0 0 0 chr11 53102380 53102403 -97681150 + AT_rich Low_complexity Low_complexity 1 23 0 225 271 170 13 chr11 53103620 53103996 -97679557 + L1ME3A LINE L1 4915 5349 -797 383 317 80 10 chr11 53104212 53104524 -97679029 + L1ME3A LINE L1 5596 5929 -241 224 109 0 22 chr11 53104678 53104724 -97678829 + (TA)n Simple_repeat Simple_repeat 1 45 0 369 43 0 0 chr11 53106116 53106163 -97677390 + (TTTTC)n Simple_repeat Simple_repeat 3 49 0 249 119 0 0 chr11 53106181 53106223 -97677330 + (TC)n Simple_repeat Simple_repeat 1 42 0 1184 195 88 0 chr11 53106236 53106487 -97677066 - AluSx SINE Alu -39 273 1 4888 238 55 11 chr11 56107610 56108744 -94674809 + MER57-int LTR ERV1 904 2086 -6340 870 263 73 0 chr11 56109020 56109320 -94674233 + L1MC4 LINE L1 7579 7900 -142 28 0 0 0 chr11 56109387 56109415 -94674138 + AT_rich Low_complexity Low_complexity 1 28 0 2039 102 118 94 chr11 56109504 56110347 -94673206 - pTR5 LTR ERV1 0 2438 66 2152 162 77 6 chr11 56110457 56110925 -94672628 + L1P4 LINE L1 5283 5783 -382 1369 209 16 29 chr11 56110926 56111232 -94672321 + AluJb SINE Alu 1 302 -10 2144 108 0 32 chr11 56111238 56111378 -94672175 + AluSg SINE Alu 1 144 -166 345 24 0 0 chr11 56111378 56111420 -94672133 + (CA)n Simple_repeat Simple_repeat 2 43 0 2144 108 0 32 chr11 56111420 56111594 -94671959 + AluSg SINE Alu 144 305 -5 2125 107 3 0 chr11 56111614 56111913 -94671640 + AluY SINE Alu 1 300 -11 344 153 47 12 chr11 56111924 56112009 -94671544 + AluS SINE Alu 5 92 -211 6481 133 50 11 chr11 56112146 56112856 -94670697 + MER57-int LTR ERV1 12 781 -2307 221 0 35 0 chr11 56112856 56112885 -94670668 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 6481 133 50 11 chr11 56112885 56113264 -94670289 + MER57-int LTR ERV1 781 1144 -1944 883 148 0 26 chr11 56113277 56113432 -94670121 - AluSp/q SINE Alu 0 313 163 2509 178 21 29 chr11 56113534 56113751 -94669802 + MER57-int LTR ERV1 6638 6855 -682 2163 133 0 3 chr11 56113751 56114052 -94669501 - AluSx SINE Alu -12 300 1 2509 178 21 29 chr11 56114052 56114361 -94669192 + MER57-int LTR ERV1 6855 7160 -377 2090 112 7 0 chr11 56114361 56114648 -94668905 + AluSc SINE Alu 1 289 -20 426 209 27 45 chr11 56114649 56114759 -94668794 + LTR54B LTR ERV1 14 121 -377 291 226 36 12 chr11 56114763 56114847 -94668706 + MER57-int LTR ERV1 7269 7354 -183 720 129 53 8 chr11 56114866 56114998 -94668555 + AluSq/x SINE Alu 1 138 -175 490 232 82 39 chr11 56116239 56116446 -94667107 - L1MC4 LINE L1 -536 7506 7291 1018 300 52 91 chr11 56117566 56117672 -94665881 + L1M3a LINE L1 2 111 -5844 396 302 0 9 chr11 56117672 56117788 -94665765 + FLAM_A SINE Alu 1 115 -18 1018 300 52 91 chr11 56117788 56118580 -94664973 + L1M3a LINE L1 111 865 -5090 1841 103 15 8 chr11 56120501 56120763 -94662790 + AluSc SINE Alu 35 298 -11 512 286 7 0 chr11 56120941 56121081 -94662472 + MIR SINE MIR 108 248 -14 485 204 36 22 chr11 56122288 56122425 -94661128 + MIR3 SINE MIR 7 145 -63 384 175 22 0 chr11 56122775 56122877 -94660676 - L1P LINE L1 -804 5342 5239 1527 179 47 42 chr11 56122979 56123057 -94660496 + L1P LINE L1 3715 3791 -2355 2313 111 0 0 chr11 56123057 56123363 -94660190 + AluSx SINE Alu 1 306 -6 1527 179 47 42 chr11 56123363 56123669 -94659884 + L1P LINE L1 3791 4101 -2045 2052 119 3 7 chr11 56123671 56123974 -94659579 + AluY SINE Alu 1 302 -9 2454 192 65 45 chr11 56123984 56124834 -94658719 + MER57-int LTR ERV1 4828 5694 -1843 233 273 71 20 chr11 56125231 56125330 -94658223 + L1 LINE L1 2 105 -5850 805 313 52 69 chr11 56125414 56126165 -94657388 + L1 LINE L1 76 814 -5141 2113 96 7 3 chr11 56126165 56126485 -94657068 + AluSg SINE Alu 1 310 0 805 313 52 69 chr11 56126485 56126525 -94657028 + L1 LINE L1 814 853 -5102 867 269 37 24 chr11 56126539 56126977 -94656576 + L1 LINE L1 3977 4423 -1611 2083 115 10 3 chr11 56126977 56127273 -94656280 - AluSq SINE Alu -15 298 1 867 269 37 24 chr11 56127273 56127291 -94656262 + L1 LINE L1 4423 4439 -1595 189 247 74 12 chr11 56127565 56127646 -94655907 + MIR SINE MIR 147 232 -30 464 264 62 16 chr11 56127769 56127898 -94655655 + MIR3 SINE MIR 26 160 -48 1925 157 18 0 chr11 56128669 56128955 -94654598 - AluSg SINE Alu -19 291 1 1041 194 40 45 chr11 56129023 56129408 -94654145 - LTR2B LTR ERV1 0 490 1 378 0 0 0 chr11 56130331 56130373 -94653180 + (TG)n Simple_repeat Simple_repeat 1 42 0 744 247 55 8 chr11 56130581 56130816 -94652737 - L1M2 LINE L1 -6595 254 9 1486 242 40 36 chr11 56130864 56131290 -94652263 - L1M4 LINE L1 -1868 4278 3848 1605 177 7 30 chr11 56131290 56131589 -94651964 - AluJo SINE Alu -20 292 1 1486 242 40 36 chr11 56131589 56131766 -94651787 - L1M4 LINE L1 -2298 3848 3673 243 0 0 0 chr11 56131940 56131967 -94651586 + (TG)n Simple_repeat Simple_repeat 2 28 0 740 126 8 0 chr11 56131986 56132113 -94651440 + L1MA5A LINE L1 6164 6291 -6 346 222 89 111 chr11 56132137 56132317 -94651236 - L1ME LINE L1 -731 5431 5256 755 292 52 17 chr11 56132430 56133085 -94650468 - L1ME LINE L1 -2775 3371 2694 898 244 14 0 chr11 56133326 56133539 -94650014 - ERVL LTR ERVL -4846 918 703 534 264 123 64 chr11 56133702 56134123 -94649430 - LTR16A1 LTR ERVL -4 453 8 234 380 80 37 chr11 56134149 56134449 -94649104 + L2 LINE L2 2576 2888 -426 * 250 243 95 14 chr11 56134416 56134490 -94649063 + L2 LINE L2 3234 3313 0 684 140 0 97 chr11 56134824 56135031 -94648522 - AluSx SINE Alu -123 189 3 202 290 21 83 chr11 56135113 56135306 -94648247 + L2 LINE L2 3123 3303 -10 1826 143 57 0 chr11 56135396 56135676 -94647877 + AluSc SINE Alu 1 296 -13 300 213 75 0 chr11 56136547 56136627 -94646926 + MIR SINE MIR 119 204 -58 463 299 76 30 chr11 56138688 56138885 -94644668 - MIR SINE MIR 0 262 57 359 356 55 6 chr11 56139263 56139426 -94644127 + MIR SINE MIR 36 206 -56 214 274 0 63 chr11 56139749 56139844 -94643709 + MIR SINE MIR 96 184 -78 3812 200 44 17 chr11 56140771 56142229 -94641324 - L1MA9 LINE L1 -4 7268 5779 2076 260 70 40 chr11 56142255 56144203 -94639350 - L1MA9 LINE L1 -4174 2933 934 822 254 20 6 chr11 56144227 56144515 -94639038 - L1M3c LINE L1 -5845 1192 42 2247 100 0 3 chr11 56144526 56144817 -94638736 - AluY SINE Alu -21 290 1 1748 217 20 4 chr11 56144817 56145273 -94638280 - L1M4 LINE L1 -814 5332 4870 225 143 57 43 chr11 56145279 56145349 -94638204 - L1M4 LINE L1 -1586 4560 4490 529 162 48 0 chr11 56145349 56145454 -94638099 - MLT1A1 LTR MaLR 0 365 256 3101 71 2 2 chr11 56145459 56145867 -94637686 + L1PA6 LINE L1 5744 6151 -3 419 358 34 11 chr11 56146023 56146202 -94637351 - MIR SINE MIR -76 186 4 621 314 93 39 chr11 56146861 56147305 -94636248 + L2 LINE L2 2794 3255 -58 239 333 35 0 chr11 56147474 56147618 -94635935 - LTR67 LTR ERVL 0 557 409 1448 170 79 95 chr11 56147995 56148502 -94635051 - L1MA9 LINE L1 -38 6274 5776 335 208 0 0 chr11 56148520 56148597 -94634956 + L1MA9 LINE L1 6162 6238 -74 324 141 56 63 chr11 56148598 56148740 -94634813 + (TTATA)n Simple_repeat Simple_repeat 4 144 0 2935 188 15 47 chr11 56148749 56149676 -94633877 - L1MA9 LINE L1 -544 5768 4813 2248 106 3 3 chr11 56149676 56149977 -94633576 + AluSx SINE Alu 1 301 -11 2935 188 15 47 chr11 56149977 56150099 -94633454 - L1MA9 LINE L1 -1499 4813 4689 1884 177 0 0 chr11 56150099 56150415 -94633138 - AluSx SINE Alu 0 316 1 2935 188 15 47 chr11 56150415 56150666 -94632887 - L1MA9 LINE L1 -1623 4689 4517 298 253 53 0 chr11 56150676 56150751 -94632802 + 5S rRNA rRNA 1 79 -42 288 316 115 34 chr11 56150765 56150974 -94632579 - MIR SINE MIR -3 259 34 3488 183 19 24 chr11 56151164 56151453 -94632100 - L1MC1 LINE L1 -30 6583 6294 3259 81 0 2 chr11 56151453 56151900 -94631653 + L1PA8 LINE L1 5725 6170 -2 3488 183 19 24 chr11 56151900 56152366 -94631187 - L1MC1 LINE L1 -319 6294 5832 3185 228 46 53 chr11 56152367 56152698 -94630855 - L1MC1 LINE L1 -1334 5092 4760 2247 103 3 13 chr11 56152698 56153010 -94630543 - AluSp SINE Alu -4 309 1 3185 228 46 53 chr11 56153010 56153986 -94629567 - L1MC1 LINE L1 -1666 4760 3794 820 181 6 6 chr11 56153998 56154158 -94629395 + MLT1A1 LTR MaLR 1 160 -205 570 222 97 0 chr11 56154159 56154303 -94629250 - L1MC1 LINE L1 -5825 601 444 1544 169 40 91 chr11 56154436 56154886 -94628667 - L1MC1 LINE L1 -5999 427 1 216 330 23 11 chr11 56155303 56155391 -94628162 + L2 LINE L2 3184 3272 0 231 336 64 0 chr11 56156922 56157032 -94626521 - L2 LINE L2 -436 2878 2762 550 329 120 32 chr11 56157036 56157568 -94625985 - L2 LINE L2 -518 2796 2218 1194 246 18 70 chr11 56157693 56158091 -94625462 + MLT1B LTR MaLR 14 390 0 1574 193 11 6 chr11 56158093 56158455 -94625098 + MLT1B-int LTR MaLR 3 366 -1005 737 330 102 20 chr11 56160488 56161031 -94622522 - L2 LINE L2 -344 2928 2339 340 371 36 0 chr11 56161126 56161266 -94622287 + L2 LINE L2 2927 3071 -201 3807 199 9 32 chr11 56163217 56164026 -94619527 - L1M1 LINE L1 -6747 818 29 22 0 0 0 chr11 56164358 56164380 -94619173 + AT_rich Low_complexity Low_complexity 1 22 0 2039 127 12 3 chr11 56165708 56166038 -94617515 - L1M1 LINE L1 -526 5774 5442 2206 174 52 9 chr11 56166041 56166507 -94617046 + L1MA4 LINE L1 5815 6300 0 205 241 86 0 chr11 56166934 56166992 -94616561 + MER5A DNA MER1_type 102 164 -25 288 172 17 0 chr11 56167330 56167388 -94616165 - L2 LINE L2 -1353 1961 1903 468 319 36 28 chr11 56167397 56167645 -94615908 - L2 LINE L2 -1548 1766 1517 180 0 0 0 chr11 56167792 56167812 -94615741 + (TG)n Simple_repeat Simple_repeat 1 20 0 297 188 21 21 chr11 56167836 56167932 -94615621 + CT-rich Low_complexity Low_complexity 4 99 0 284 327 101 42 chr11 56168178 56168634 -94614919 - L1MC/D LINE L1 -2071 5737 5255 22 0 0 0 chr11 56168647 56168669 -94614884 + AT_rich Low_complexity Low_complexity 1 22 0 276 274 30 15 chr11 56168818 56168953 -94614600 - L1MC/D LINE L1 -1126 5020 4884 236 326 67 22 chr11 56168965 56169100 -94614453 + L2 LINE L2 3172 3312 -1 25 31 0 0 chr11 56170265 56170297 -94613256 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr11 56170344 56170380 -94613173 + AT_rich Low_complexity Low_complexity 1 36 0 846 209 35 0 chr11 56170994 56171166 -94612387 + AluJb SINE Alu 135 312 0 256 305 176 8 chr11 56171668 56171799 -94611754 + L2 LINE L2 3110 3262 -10 1031 169 5 0 chr11 56172087 56172271 -94611282 - L1PA16 LINE L1 -2 6164 5980 4962 122 32 25 chr11 56172794 56173638 -94609915 + L1PA13 LINE L1 5310 6159 -4 382 271 61 0 chr11 56174266 56174385 -94609168 - L1ME LINE L1 -564 5600 5468 309 117 31 0 chr11 56174373 56174429 -94609124 - L1P4 LINE L1 -729 5434 5371 * 593 215 61 0 chr11 56174466 56174629 -94608924 - L1ME LINE L1 -855 5291 5119 1243 251 12 9 chr11 56174644 56174971 -94608582 + L1MA2 LINE L1 2582 2909 -3237 22 0 0 0 chr11 56175115 56175137 -94608416 + AT_rich Low_complexity Low_complexity 1 22 0 10096 193 56 13 chr11 56175144 56177445 -94606108 + L1MA2 LINE L1 2900 5304 -842 2007 146 0 0 chr11 56177445 56177739 -94605814 + AluSq SINE Alu 1 294 -19 10096 193 56 13 chr11 56177739 56177768 -94605785 + L1MA2 LINE L1 5304 5330 -816 4691 143 5 8 chr11 56177773 56178561 -94604992 + L1MA2 LINE L1 5519 6304 0 282 233 23 0 chr11 56178574 56178660 -94604893 - L1ME LINE L1 -3454 2692 2605 285 226 26 9 chr11 56178668 56178783 -94604770 + C-rich Low_complexity Low_complexity 3 119 0 894 185 0 72 chr11 56178784 56178979 -94604574 + L1 LINE L1 4833 5013 -1133 213 106 64 43 chr11 56178982 56179029 -94604524 + CT-rich Low_complexity Low_complexity 1 48 0 461 265 10 0 chr11 56179029 56179131 -94604422 - FLAM_A SINE Alu -36 106 4 746 146 14 35 chr11 56179176 56179320 -94604233 + THE1C-int LTR MaLR 1440 1580 0 2171 125 24 27 chr11 56179320 56179696 -94603857 + THE1C LTR MaLR 1 375 0 227 204 0 0 chr11 56182360 56182409 -94601144 + T-rich Low_complexity Low_complexity 1 49 0 1057 169 12 0 chr11 56182557 56182729 -94600824 - AluSg/x SINE Alu -8 304 131 699 242 18 96 chr11 56183113 56183394 -94600159 - MIR SINE MIR -1 261 3 34 0 0 0 chr11 56183525 56183559 -94599994 + AT_rich Low_complexity Low_complexity 1 34 0 787 296 89 24 chr11 56186675 56187148 -94596405 - MLT1H1 LTR MaLR -45 510 53 399 249 132 46 chr11 56187156 56187566 -94595987 - L1M4 LINE L1 -1512 4634 4190 1112 286 67 8 chr11 56187582 56188167 -94595386 - L1M4 LINE L1 -2695 3451 2833 667 294 39 15 chr11 56188170 56188374 -94595179 - MLT1E LTR MaLR -2 591 383 1189 109 0 0 chr11 56188893 56189058 -94594495 - THE1A LTR MaLR 0 355 191 444 38 0 0 chr11 56189052 56189105 -94594448 - THE1A LTR MaLR -302 53 1 * 24 32 0 0 chr11 56190781 56190812 -94592741 + AT_rich Low_complexity Low_complexity 1 31 0 4155 22 6 4 chr11 56192246 56192739 -94590814 - L1PA4 LINE L1 0 6155 5662 440 256 217 5 chr11 56192793 56192996 -94590557 - MIR SINE MIR -14 248 3 237 345 108 0 chr11 56193220 56193368 -94590185 - MIR3 SINE MIR -27 181 18 448 131 28 19 chr11 56196082 56196189 -94587364 - Charlie5 DNA MER1_type -82 2530 2423 21575 48 2 1 chr11 56196207 56199730 -94583823 - L1PA4 LINE L1 -3 6152 2626 7502 191 41 6 chr11 56199730 56202091 -94581462 - L1PBa LINE L1 -3180 3682 1094 2897 244 74 19 chr11 56202094 56203082 -94580471 - L1PBa LINE L1 -5816 1047 6 1036 198 14 18 chr11 56203131 56203353 -94580200 + THE1C LTR MaLR 1 221 -154 273 314 52 71 chr11 56203524 56203849 -94579704 + HERVL LTR ERVL 2926 3244 -2410 524 0 45 0 chr11 56206581 56206647 -94576906 + (TTTTC)n Simple_repeat Simple_repeat 2 70 0 638 281 61 4 chr11 56207166 56207412 -94576141 - MIR SINE MIR 0 262 3 33 0 0 0 chr11 56207547 56207580 -94575973 + AT_rich Low_complexity Low_complexity 1 33 0 213 306 32 0 chr11 56207645 56207707 -94575846 - MIR3 SINE MIR -27 181 118 210 244 61 61 chr11 56208340 56208422 -94575131 + L2 LINE L2 3162 3243 -70 193 333 143 0 chr11 56208612 56208675 -94574878 - L2 LINE L2 -8 3305 3234 192 40 0 0 chr11 56210465 56210490 -94573063 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 40666 68 4 0 chr11 56210490 56216606 -94566947 - L1PA4 LINE L1 -18 6137 2 599 291 89 42 chr11 56216986 56217464 -94566089 - MLT1H1 LTR MaLR -26 504 46 253 276 26 0 chr11 56217511 56217587 -94565966 - L1M4 LINE L1 -1560 4586 4509 4002 61 0 0 chr11 56217939 56218487 -94565066 + L1PA4 LINE L1 5633 6180 0 6347 73 5 5 chr11 56218487 56219334 -94564219 + L1PA7 LINE L1 5305 6151 -3 831 280 67 12 chr11 56219370 56219866 -94563687 - L1M4 LINE L1 -2789 3357 2835 598 314 59 14 chr11 56219871 56220091 -94563462 - MLT1E LTR MaLR -2 591 362 1543 183 70 68 chr11 56221105 56221488 -94562065 + LTR3 LTR ERVK 5 388 -44 3535 103 19 15 chr11 56221503 56222025 -94561528 + HERVK3 LTR ERVK 6718 7241 -2 2191 183 7 38 chr11 56222042 56222468 -94561085 + LTR3 LTR ERVK 20 432 0 569 229 201 0 chr11 56225231 56225445 -94558108 - MIR SINE MIR -2 260 4 25 31 0 0 chr11 56225584 56225616 -94557937 + AT_rich Low_complexity Low_complexity 1 32 0 663 260 49 25 chr11 56228815 56229019 -94554534 - MLT1H1 LTR MaLR -45 510 302 7525 224 32 10 chr11 56229163 56230778 -94552775 - MSTA-int LTR MaLR 0 1651 2 2213 164 46 17 chr11 56230779 56231195 -94552358 - MSTA LTR MaLR 0 428 1 1796 153 82 20 chr11 56232412 56232765 -94550788 + THE1C LTR MaLR 1 375 0 4002 104 35 7 chr11 56233790 56234795 -94548758 - MER11A LTR ERVK 0 1266 1 476 312 24 41 chr11 56236998 56237168 -94546385 + LTR16A LTR ERVL 9 175 -275 332 280 46 34 chr11 56237211 56237386 -94546167 - ERVL LTR ERVL -1788 3976 3800 1764 190 42 12 chr11 56237525 56237925 -94545628 - L1MA9 LINE L1 -9 6303 5892 1360 170 66 22 chr11 56237926 56238181 -94545372 + L1MB1 LINE L1 5511 5780 -532 490 15 30 0 chr11 56238181 56238248 -94545305 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 1360 170 66 22 chr11 56238248 56238263 -94545290 + L1MB1 LINE L1 5780 5793 -519 299 256 11 0 chr11 56238279 56238369 -94545184 - L1MA9 LINE L1 -207 6105 6015 440 87 29 0 chr11 56238563 56238632 -94544921 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 334 135 0 0 chr11 56238653 56238708 -94544845 + L1MB1 LINE L1 5828 5882 -307 1237 254 89 28 chr11 56238769 56239491 -94544062 - L1MEd LINE L1 -3152 2977 2212 415 283 128 57 chr11 56239632 56240000 -94543553 - L1MEd LINE L1 -4443 1686 1293 390 154 0 45 chr11 56240000 56240110 -94543443 + CT-rich Low_complexity Low_complexity 4 108 0 1539 182 37 0 chr11 56240110 56240379 -94543174 - AluSx SINE Alu -33 279 1 295 267 67 47 chr11 56240491 56240900 -94542653 - L1MEd LINE L1 -4863 1256 848 650 184 0 0 chr11 56241440 56241549 -94542004 - FLAM_A SINE Alu -11 131 23 1696 159 88 20 chr11 56241557 56241908 -94541645 + THE1C LTR MaLR 1 375 0 6539 60 4 4 chr11 56243416 56244254 -94539299 - L1PA4 LINE L1 -1 6154 5317 16509 71 8 2 chr11 56244292 56247285 -94536268 - L1PA4 LINE L1 -4 6151 3143 1213 133 4 1 chr11 56247285 56250524 -94533029 - ALR/Alpha Satellite centromeric 0 3248 1 1167 138 7 1 chr11 56250548 56253493 -94530060 + ALR/Alpha Satellite centromeric 1 2961 -11 1175 140 8 5 chr11 56253504 56258778 -94524775 + ALR/Alpha Satellite centromeric 1 5290 0 1139 135 5 11 chr11 56258789 56260600 -94522953 + ALR/Alpha Satellite centromeric 1 1801 -2 * 3474 161 27 16 chr11 56260574 56261197 -94522356 + MER11C LTR ERVK 442 1071 0 482 176 0 0 chr11 56261199 56261273 -94522280 - tRNA-Lys-AAG tRNA tRNA 0 76 3 2094 161 42 0 chr11 56261274 56261635 -94521918 + HERVK11 LTR ERVK 476 851 -7102 2784 118 36 6 chr11 56261635 56262218 -94521335 + HERVK11 LTR ERVK 1165 2700 -5253 * 28751 84 8 4 chr11 56262210 56266049 -94517504 + HERVK11 LTR ERVK 2912 6767 -1186 7825 72 2 0 chr11 56266034 56267029 -94516524 + HERVK11 LTR ERVK 6957 7953 0 * 6230 129 30 18 chr11 56267029 56268087 -94515466 + MER11C LTR ERVK 1 1071 0 1240 146 6 1 chr11 56268087 56283274 -94500279 + ALR/Alpha Satellite centromeric 1 15263 -7 3162 213 48 43 chr11 56283274 56284251 -94499302 + MER11C LTR ERVK 1 1071 0 1108 147 10 0 chr11 56284251 56284604 -94498949 + ALR/Alpha Satellite centromeric 1 356 -1 1179 148 3 6 chr11 56284616 56286769 -94496784 + ALR/Alpha Satellite centromeric 1 2146 -3 18592 57 52 6 chr11 56286770 56289255 -94494298 - L1PA2 LINE L1 -3336 2810 212 * 21302 32 0 0 chr11 56289246 56292499 -94491054 + L1PA2 LINE L1 2812 6154 -1 1137 151 7 5 chr11 56292499 56293275 -94490278 - ALR/Alpha Satellite centromeric -10 777 1 420 301 0 0 chr11 56293306 56293472 -94490081 + C-rich Low_complexity Low_complexity 1 166 0 1258 145 5 3 chr11 56293840 56322052 -94461501 - ALR/Alpha Satellite centromeric -74 28286 1 39357 81 2 6 chr11 56322073 56328090 -94455463 - L1PA4 LINE L1 -158 5997 3 1210 147 6 2 chr11 56328091 56333641 -94449912 + ALR/Alpha Satellite centromeric 1 5575 -27 1117 153 4 3 chr11 56333653 56335104 -94448449 - ALR/Alpha Satellite centromeric 0 1453 1 1060 178 5 18 chr11 56435107 56436921 -94346632 - ALR/Alpha Satellite centromeric 0 1790 1 1090 162 5 3 chr11 56437022 56442914 -94340639 - ALR/Alpha Satellite centromeric 0 5902 1 302 48 0 0 chr11 56442910 56442952 -94340601 - AluY SINE Alu -2 298 257 * 1335 118 3 1 chr11 56443054 56450196 -94333357 + ALR/Alpha Satellite centromeric 1 7150 -6 39425 67 5 1 chr11 56450296 56456213 -94327340 + L1PA4 LINE L1 221 6152 -3 1038 171 4 0 chr11 56456226 56457494 -94326059 - ALR/Alpha Satellite centromeric -1 1272 1 1050 171 3 1 chr11 56457505 56463166 -94320387 - ALR/Alpha Satellite centromeric -7 5667 1 1335 112 1 1 chr11 56463267 56469859 -94313694 - ALR/Alpha Satellite centromeric 0 6594 1 1298 114 4 2 chr11 56469872 56476685 -94306868 - ALR/Alpha Satellite centromeric 0 6825 1 1072 180 0 0 chr11 56476947 56477147 -94306406 + L1 LINE L1 4759 4958 -1188 410 260 64 40 chr11 56477152 56477325 -94306228 + MLT1E3 LTR MaLR 46 222 -402 1320 201 7 19 chr11 56478104 56478373 -94305180 + AluJo SINE Alu 1 266 -46 220 279 23 12 chr11 56479076 56479162 -94304391 + (TATG)n Simple_repeat Simple_repeat 2 88 0 188 227 0 23 chr11 56479430 56479474 -94304079 + L3b LINE CR1 1530 1572 -11 297 189 40 14 chr11 56479559 56479633 -94303920 - MLT2B1 LTR ERVL 0 520 445 1483 174 26 65 chr11 56479634 56479906 -94303647 + MER7A DNA MER2_type 22 278 -2760 1774 151 0 31 chr11 56479906 56480197 -94303356 + AluSx SINE Alu 6 287 -25 1483 174 26 65 chr11 56480197 56480263 -94303290 + MER7A DNA MER2_type 278 345 -1 480 289 0 15 chr11 56480269 56480404 -94303149 - MLT2B3 LTR ERVL -47 507 375 * 998 220 21 21 chr11 56480400 56480641 -94302912 - MLT2B3 LTR ERVL -313 241 1 503 146 0 58 chr11 56480869 56480972 -94302581 - L1PA11 LINE L1 0 6174 6078 754 224 0 0 chr11 56482480 56482645 -94300908 - ALR/Alpha Satellite centromeric 0 172 8 1022 170 9 0 chr11 56482660 56483772 -94299781 - ALR/Alpha Satellite centromeric 0 1122 1 6120 13 0 0 chr11 56483783 56484477 -94299076 - L1HS LINE L1 0 6155 5462 3338 21 0 0 chr11 56484473 56484923 -94298630 + L1P1 LINE L1 4988 5437 -718 * 1061 167 8 3 chr11 56484923 56487105 -94296448 - ALR/Alpha Satellite centromeric 0 2193 1 1693 43 14 0 chr11 56487105 56487315 -94296238 - L1P LINE L1 -1180 4966 4754 3493 41 7 2 chr11 56487316 56487756 -94295797 + L1PA2 LINE L1 5714 6155 0 1137 169 4 3 chr11 56487756 56494396 -94289157 - ALR/Alpha Satellite centromeric -1 6645 1 5917 59 1 31 chr11 56494396 56495710 -94287843 + L1PA4 LINE L1 4598 5886 -269 975 173 0 1 chr11 56495813 56496328 -94287225 - ALR/Alpha Satellite centromeric 0 514 1 1105 162 7 2 chr11 56496343 56503270 -94280283 - ALR/Alpha Satellite centromeric 0 6961 1 1211 162 5 2 chr11 56503286 56519494 -94264059 - ALR/Alpha Satellite centromeric 0 16266 1 35106 75 1 2 chr11 56519494 56524145 -94259408 - L1P LINE L1 -1491 4655 9 1288 135 5 1 chr11 56524162 56531141 -94252412 + ALR/Alpha Satellite centromeric 1 7005 -37 1069 160 8 4 chr11 56531241 56536042 -94247511 - ALR/Alpha Satellite centromeric 0 4817 1 1093 173 6 4 chr11 56536060 56541114 -94242439 + ALR/Alpha Satellite centromeric 1 5066 -11 1088 168 4 2 chr11 56541128 56545486 -94238067 + ALR/Alpha Satellite centromeric 1 4365 -10 1042 167 4 2 chr11 56545497 56548054 -94235499 + ALR/Alpha Satellite centromeric 1 2560 -13 1065 167 12 11 chr11 56548067 56550799 -94232754 + ALR/Alpha Satellite centromeric 1 2735 -67 1075 164 2 3 chr11 56550824 56554449 -94229104 + ALR/Alpha Satellite centromeric 1 3623 -1 39537 68 11 10 chr11 56554452 56560578 -94222975 + L1PA4 LINE L1 13 6144 -11 711 224 0 20 chr11 56560589 56560741 -94222812 + AluJo SINE Alu 120 268 -44 1119 166 5 2 chr11 56561131 56563617 -94219936 + ALR/Alpha Satellite centromeric 1 2493 -6 1040 176 7 2 chr11 56563629 56567120 -94216433 + ALR/Alpha Satellite centromeric 1 3508 -6 1091 170 5 4 chr11 56567136 56570862 -94212691 + ALR/Alpha Satellite centromeric 1 3732 -36 6692 65 2 20 chr11 56570975 56572242 -94211311 + L1PA4 LINE L1 4911 6153 -2 975 171 1 1 chr11 56572265 56572859 -94210694 - ALR/Alpha Satellite centromeric 0 593 1 1280 141 6 1 chr11 56572874 56580488 -94203065 - ALR/Alpha Satellite centromeric 0 7652 1 1072 180 0 0 chr11 56580750 56580950 -94202603 + L1 LINE L1 4759 4958 -1188 410 260 64 40 chr11 56580955 56581128 -94202425 + MLT1E3 LTR MaLR 46 222 -402 1320 201 7 19 chr11 56581908 56582177 -94201376 + AluJo SINE Alu 1 266 -46 220 279 23 12 chr11 56582880 56582966 -94200587 + (TATG)n Simple_repeat Simple_repeat 2 88 0 188 227 0 23 chr11 56583234 56583278 -94200275 + L3b LINE CR1 1530 1572 -11 297 189 40 14 chr11 56583363 56583437 -94200116 - MLT2B1 LTR ERVL 0 520 445 1483 174 26 65 chr11 56583438 56583710 -94199843 + MER7A DNA MER2_type 22 278 -2760 1774 151 0 31 chr11 56583710 56584001 -94199552 + AluSx SINE Alu 6 287 -25 1483 174 26 65 chr11 56584001 56584067 -94199486 + MER7A DNA MER2_type 278 345 -1 480 289 0 15 chr11 56584073 56584208 -94199345 - MLT2B3 LTR ERVL -47 507 375 * 998 220 21 21 chr11 56584204 56584445 -94199108 - MLT2B3 LTR ERVL -313 241 1 503 146 0 58 chr11 56584673 56584776 -94198777 - L1PA11 LINE L1 0 6174 6078 483 328 26 81 chr11 56586782 56587084 -94196469 - L2 LINE L2 -73 3240 2970 213 94 0 0 chr11 56587084 56587116 -94196437 + (TG)n Simple_repeat Simple_repeat 2 33 0 483 328 26 81 chr11 56587116 56587271 -94196282 - L2 LINE L2 -343 2970 2808 216 67 0 0 chr11 56588859 56588889 -94194664 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr11 56590725 56590746 -94192807 + (TTTC)n Simple_repeat Simple_repeat 4 24 0 189 0 0 0 chr11 56590745 56590766 -94192787 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 205 171 0 0 chr11 56592895 56592930 -94190623 + (TATATG)n Simple_repeat Simple_repeat 1 35 0 665 80 61 17 chr11 56593382 56593806 -94189747 + (TA)n Simple_repeat Simple_repeat 1 442 0 192 186 0 41 chr11 56594429 56594526 -94189027 + (TAA)n Simple_repeat Simple_repeat 2 94 0 28 48 0 0 chr11 56594638 56594680 -94188873 + AT_rich Low_complexity Low_complexity 1 42 0 2215 188 94 7 chr11 56594680 56595567 -94187986 + SATR1 Satellite Satellite 1 963 -154 2346 168 127 16 chr11 56595581 56597111 -94186442 + SATR1 Satellite Satellite 1 1699 -15 824 240 264 15 chr11 56597242 56598336 -94185217 + SATR1 Satellite Satellite 1 1367 -15 312 195 110 102 chr11 56598353 56598471 -94185082 + SATR1 Satellite Satellite 215 333 -137 1072 198 237 48 chr11 56598511 56599005 -94184548 + SATR1 Satellite Satellite 1 587 -159 1499 131 50 42 chr11 56604686 56604946 -94178607 + AluSx SINE Alu 12 273 -39 267 103 0 0 chr11 56604968 56605007 -94178546 + (GAAA)n Simple_repeat Simple_repeat 3 41 0 1315 173 76 0 chr11 56606432 56606669 -94176884 + AluSg SINE Alu 16 270 -40 860 107 0 14 chr11 56606669 56606809 -94176744 + (GAAA)n Simple_repeat Simple_repeat 3 140 0 192 158 0 0 chr11 56608139 56608177 -94175376 + T-rich Low_complexity Low_complexity 1 38 0 634 98 52 17 chr11 56608294 56608467 -94175086 + (TA)n Simple_repeat Simple_repeat 2 180 0 631 285 0 0 chr11 56608468 56608605 -94174948 - FRAM SINE Alu -39 137 1 218 184 41 0 chr11 56608760 56608809 -94174744 + (TA)n Simple_repeat Simple_repeat 2 52 0 306 279 100 7 chr11 56608921 56609061 -94174492 + L1MEd LINE L1 1057 1209 -4996 320 360 42 13 chr11 56609337 56609573 -94173980 + L1MEd LINE L1 1432 1674 -4722 796 207 133 86 chr11 56609633 56610038 -94173515 - L1MCc LINE L1 -4997 1426 1003 2665 80 21 8 chr11 56610295 56610681 -94172872 + L1PA7 LINE L1 5760 6150 -4 25 31 0 0 chr11 56610703 56610735 -94172818 + AT_rich Low_complexity Low_complexity 1 32 0 342 0 0 0 chr11 56610798 56610836 -94172717 + (TA)n Simple_repeat Simple_repeat 1 38 0 510 288 143 19 chr11 56611089 56611889 -94171664 - L1ME LINE L1 -353 5817 4915 23 0 0 0 chr11 56612982 56613005 -94170548 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 56614255 56614276 -94169277 + AT_rich Low_complexity Low_complexity 1 21 0 423 77 26 13 chr11 56614449 56614527 -94169026 + (TTTA)n Simple_repeat Simple_repeat 2 80 0 218 426 22 0 chr11 56616159 56616295 -94167258 + L2 LINE L2 2850 2988 -325 368 283 0 20 chr11 56616300 56616452 -94167101 + (TA)n Simple_repeat Simple_repeat 2 150 0 303 370 60 23 chr11 56616490 56616790 -94166763 + L2 LINE L2 3003 3313 0 1046 209 39 13 chr11 56618970 56619200 -94164353 + MLT2B3 LTR ERVL 5 240 -314 286 351 37 0 chr11 56619180 56619314 -94164239 + MLT2B3 LTR ERVL 370 508 -46 * 1039 184 92 0 chr11 56619324 56619530 -94164023 - Tigger3(Golem) DNA MER2_type -3 3026 2802 351 0 0 0 chr11 56619532 56619571 -94163982 + (TA)n Simple_repeat Simple_repeat 1 39 0 329 67 22 0 chr11 56619578 56619623 -94163930 + MLT2D LTR ERVL 369 414 0 647 254 0 0 chr11 56620823 56620949 -94162604 - FRAM SINE Alu -58 118 1 216 0 0 0 chr11 56622975 56622999 -94160554 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 23 54 0 0 chr11 56624205 56624242 -94159311 + AT_rich Low_complexity Low_complexity 1 37 0 357 75 0 0 chr11 56624831 56624884 -94158669 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 271 319 99 42 chr11 56625570 56625783 -94157770 - MLT1J LTR MaLR -176 335 111 836 283 79 13 chr11 56626959 56627337 -94156216 + L1MA9 LINE L1 5872 6274 -38 1386 223 3 17 chr11 56627492 56627783 -94155770 + AluJo SINE Alu 1 287 -25 774 155 31 0 chr11 56628352 56628481 -94155072 + AluSq SINE Alu 24 156 -157 23 105 0 0 chr11 56628809 56628895 -94154658 + AT_rich Low_complexity Low_complexity 1 86 0 329 58 19 0 chr11 56629079 56629131 -94154422 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 420 220 0 0 chr11 56629162 56629253 -94154300 - L1MA9 LINE L1 -207 6105 6015 357 195 50 1 chr11 56629270 56629358 -94154195 + L1MA9 LINE L1 5775 5865 -426 311 154 0 0 chr11 56629376 56629441 -94154112 - L1MA7 LINE L1 0 6291 6227 258 163 0 0 chr11 56629441 56629490 -94154063 + L1M3 LINE L1 5834 5882 -289 1070 297 65 11 chr11 56629551 56630278 -94153275 - L1MEd LINE L1 -3152 2977 2212 422 301 38 38 chr11 56630730 56631095 -94152458 - L1MEd LINE L1 -4863 1256 892 688 165 0 0 chr11 56631655 56631764 -94151789 - FLAM_A SINE Alu -11 131 23 1621 184 82 20 chr11 56631772 56632125 -94151428 + THE1C LTR MaLR 1 375 0 205 195 0 0 chr11 56635529 56635570 -94147983 + T-rich Low_complexity Low_complexity 1 41 0 647 285 61 4 chr11 56636081 56636327 -94147226 - MIR SINE MIR 0 262 3 36 23 0 0 chr11 56636462 56636505 -94147048 + AT_rich Low_complexity Low_complexity 1 43 0 184 293 20 101 chr11 56636559 56636658 -94146895 - MIR3 SINE MIR -27 181 91 675 280 134 41 chr11 56639674 56640136 -94143417 - MLT1H1 LTR MaLR -50 505 46 406 258 131 39 chr11 56640153 56640541 -94143012 - L1M4 LINE L1 -1525 4621 4198 7647 33 0 0 chr11 56640601 56641513 -94142040 - L1P LINE L1 -1110 5036 4125 4537 35 2 2 chr11 56641513 56642052 -94141501 + L1PA3 LINE L1 5605 6144 -11 914 275 61 14 chr11 56642079 56642570 -94140983 - L1M4 LINE L1 -2744 3402 2889 694 304 24 14 chr11 56642628 56642835 -94140718 - MLT1E LTR MaLR -2 591 383 556 262 215 0 chr11 56643347 56643561 -94139992 - MIR SINE MIR 0 262 3 200 323 32 0 chr11 56643783 56643845 -94139708 - MIR3 SINE MIR -27 181 118 232 302 69 37 chr11 56646676 56646865 -94136688 - MLT1H1-int LTR MaLR -847 524 330 888 299 107 44 chr11 56647000 56647495 -94136058 - MLT1H1 LTR MaLR 0 555 30 532 290 86 19 chr11 56647523 56647940 -94135613 - L1M4 LINE L1 -1512 4634 4190 720 301 75 11 chr11 56647957 56648412 -94135141 - L1M4 LINE L1 -2688 3458 2975 39145 87 3 3 chr11 56648451 56654599 -94128954 - L1PA6 LINE L1 -1 6153 1 24682 96 2 12 chr11 56654601 56658188 -94125365 - L1P LINE L1 -1970 4176 629 27 0 0 0 chr11 56658221 56658248 -94125305 + AT_rich Low_complexity Low_complexity 1 27 0 627 242 109 38 chr11 56659003 56659487 -94124066 - L1M4 LINE L1 -708 5470 4951 2325 100 0 10 chr11 56659488 56659797 -94123756 + AluSx SINE Alu 1 306 -6 2552 215 29 0 chr11 56659797 56660426 -94123127 + L1 LINE L1 3034 3680 -2466 192 203 4 0 chr11 56660776 56660822 -94122731 + MIR SINE MIR 51 97 -111 181 420 20 20 chr11 56661312 56661557 -94121996 + L2 LINE L2 2829 3073 -199 246 70 0 0 chr11 56661948 56661991 -94121562 - Alu SINE Alu -2 301 259 295 323 23 0 chr11 56662396 56662529 -94121024 + SST1 Satellite centromeric 832 967 -596 207 203 0 17 chr11 56662799 56662858 -94120695 + (CA)n Simple_repeat Simple_repeat 1 58 0 431 277 63 59 chr11 56662863 56663166 -94120387 - SST1 Satellite centromeric -27 1536 1233 2020 123 3 16 chr11 56663559 56663869 -94119684 - AluSx SINE Alu -6 306 1 180 0 0 0 chr11 56664137 56664157 -94119396 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 444 125 0 0 chr11 56664413 56664485 -94119068 - Alu SINE Alu -2 309 238 554 309 49 18 chr11 56664947 56665170 -94118383 + MLT1E LTR MaLR 362 591 -2 914 301 52 10 chr11 56665175 56665767 -94117786 + L1M4 LINE L1 2835 3451 -2695 457 263 91 38 chr11 56665784 56666157 -94117396 + L1M4 LINE L1 4190 4582 -1564 657 300 79 35 chr11 56666228 56666698 -94116855 + MLT1H1 LTR MaLR 53 504 -51 188 349 143 0 chr11 56668855 56668918 -94114635 + L2 LINE L2 3193 3264 -8 37 23 0 0 chr11 56669961 56670005 -94113548 + AT_rich Low_complexity Low_complexity 1 44 0 650 264 92 4 chr11 56670140 56670379 -94113174 + MIR SINE MIR 3 262 0 223 191 0 0 chr11 56670887 56670929 -94112624 + A-rich Low_complexity Low_complexity 1 42 0 801 164 132 64 chr11 56672792 56673011 -94110542 - THE1C LTR MaLR 0 375 142 276 260 0 0 chr11 56673017 56673090 -94110463 + L1MA9 LINE L1 6033 6105 -207 339 25 0 0 chr11 56673090 56673130 -94110423 + (TA)n Simple_repeat Simple_repeat 1 40 0 1150 191 66 15 chr11 56673130 56673403 -94110150 - L1M2 LINE L1 -512 5800 5514 1652 170 58 18 chr11 56673408 56673808 -94109745 + L1MA9 LINE L1 5895 6310 -2 542 341 61 23 chr11 56674306 56674746 -94108807 + MERVL LTR ERVL 4153 4609 -876 302 348 19 32 chr11 56675101 56675256 -94108297 - LTR16A LTR ERVL -275 175 23 30616 57 4 0 chr11 56676316 56681099 -94102454 - L1PA4 LINE L1 -1 6154 1356 2118 168 43 19 chr11 56683067 56683485 -94100068 + MSTA LTR MaLR 1 428 0 7227 201 75 22 chr11 56683485 56685053 -94098500 + MSTA-int LTR MaLR 1 1651 0 789 205 84 14 chr11 56685053 56685268 -94098285 + MSTA LTR MaLR 1 230 -198 613 192 39 6 chr11 56686367 56686523 -94097030 + L1MA7 LINE L1 6128 6288 -3 26 50 0 0 chr11 56686524 56686564 -94096989 + AT_rich Low_complexity Low_complexity 1 40 0 2248 96 0 0 chr11 56687981 56688294 -94095259 + L1PA7 LINE L1 5842 6154 0 196 283 0 0 chr11 56688659 56688705 -94094848 + L2 LINE L2 3219 3264 -8 282 56 0 0 chr11 56688817 56688853 -94094700 + (CA)n Simple_repeat Simple_repeat 2 37 0 2219 198 29 2 chr11 56690784 56691228 -94092325 + L1MB3 LINE L1 5640 6095 -88 21 0 0 0 chr11 56691422 56691443 -94092110 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 56692075 56692103 -94091450 + AT_rich Low_complexity Low_complexity 1 28 0 341 367 127 0 chr11 56693799 56694044 -94089509 - LTR16A LTR ERVL -3 447 172 360 333 52 9 chr11 56694065 56694275 -94089278 + L1MC4 LINE L1 7455 7673 -369 408 277 84 0 chr11 56694306 56694425 -94089128 + FLAM_A SINE Alu 1 129 -4 11684 254 36 21 chr11 56694442 56699833 -94083720 - L1PA12 LINE L1 -1692 5892 436 1083 353 53 39 chr11 56699835 56701842 -94081711 + ERVL LTR ERVL 2984 5113 -651 267 348 0 17 chr11 56701916 56702031 -94081522 + ERVL LTR ERVL 5221 5333 -431 456 297 86 9 chr11 56702405 56702627 -94080926 + LTR33 LTR ERVL 210 448 -73 439 303 128 42 chr11 56704129 56704674 -94078879 + L1ME LINE L1 4518 5109 -1037 2490 174 65 24 chr11 56704728 56705308 -94078245 + L1MA9 LINE L1 4733 5336 -810 2125 125 49 26 chr11 56705315 56705660 -94077893 - THE1B LTR MaLR -11 353 1 8979 113 88 36 chr11 56705660 56707162 -94076391 - THE1B-int LTR MaLR 0 1580 1 2064 145 48 31 chr11 56707162 56707520 -94076033 - THE1B LTR MaLR 0 364 1 4433 166 40 65 chr11 56707520 56707857 -94075696 + L1MA9 LINE L1 5332 5676 -636 1712 185 0 20 chr11 56707857 56708160 -94075393 + AluSq SINE Alu 5 301 -12 4433 166 40 65 chr11 56708160 56708800 -94074753 + L1MA9 LINE L1 5676 6284 -28 460 289 21 29 chr11 56708935 56709215 -94074338 + L1ME LINE L1 5271 5548 -616 272 283 11 0 chr11 56709399 56709491 -94074062 + L1ME LINE L1 5771 5863 -307 523 239 71 15 chr11 56709882 56710079 -94073474 + L1MA9 LINE L1 6066 6273 -39 34 0 0 0 chr11 56710541 56710575 -94072978 + AT_rich Low_complexity Low_complexity 1 34 0 308 24 24 0 chr11 56710590 56710631 -94072922 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1210 22 0 0 chr11 56710631 56710770 -94072783 - L1PA2 LINE L1 -13 6142 6004 1686 173 0 4 chr11 56710770 56711048 -94072505 - AluSg1 SINE Alu -32 277 1 225 204 20 0 chr11 56712538 56712587 -94070966 + A-rich Low_complexity Low_complexity 1 50 0 37 39 0 0 chr11 56713113 56713164 -94070389 + AT_rich Low_complexity Low_complexity 1 51 0 7051 44 12 12 chr11 56713341 56714245 -94069308 - L1PA4 LINE L1 0 6155 5235 2779 10 0 13 chr11 56715490 56715800 -94067753 - AluY SINE Alu -4 307 2 367 113 0 0 chr11 56716417 56716470 -94067083 + THE1A LTR MaLR 1 53 -302 * 1298 76 0 6 chr11 56716459 56716630 -94066923 + THE1A LTR MaLR 186 355 0 25 0 0 0 chr11 56716633 56716658 -94066895 + AT_rich Low_complexity Low_complexity 1 25 0 562 312 59 15 chr11 56717177 56717379 -94066174 + MLT1E LTR MaLR 362 572 -21 724 311 82 10 chr11 56717442 56718036 -94065517 + L1M4 LINE L1 2846 3482 -2664 357 259 102 45 chr11 56718029 56718450 -94065103 + L1M4 LINE L1 4190 4634 -1512 * 394 327 13 13 chr11 56718458 56718608 -94064945 + MLT1H1 LTR MaLR 53 202 -347 586 272 30 47 chr11 56718761 56718960 -94064593 + MLT1H1 LTR MaLR 292 488 -67 2065 90 0 22 chr11 56718960 56719237 -94064316 - AluY SINE Alu -6 305 35 586 272 30 47 chr11 56719237 56719272 -94064281 + MLT1H1 LTR MaLR 488 522 -33 7418 90 5 1 chr11 56720580 56721545 -94062008 - LTR5 LTR ERVK 0 969 1 22 0 0 0 chr11 56722204 56722226 -94061327 + AT_rich Low_complexity Low_complexity 1 22 0 1354 53 0 0 chr11 56722527 56722698 -94060855 - L1PA4 LINE L1 -4 6151 5981 28 48 0 0 chr11 56723485 56723527 -94060026 + AT_rich Low_complexity Low_complexity 1 42 0 614 272 98 0 chr11 56723662 56723886 -94059667 + MIR SINE MIR 3 248 -14 27 0 0 0 chr11 56724953 56724980 -94058573 + AT_rich Low_complexity Low_complexity 1 27 0 2175 117 3 3 chr11 56727869 56728177 -94055376 + AluSq SINE Alu 1 308 -5 1833 134 91 20 chr11 56728183 56728533 -94055020 - THE1C LTR MaLR 0 375 1 410 188 173 9 chr11 56728533 56728660 -94054893 + FRAM SINE Alu 23 162 -4 352 273 61 57 chr11 56729264 56729561 -94053992 + L1MEc LINE L1 1062 1359 -5037 1729 142 89 0 chr11 56729698 56729979 -94053574 + AluSg SINE Alu 3 308 -2 1898 209 75 22 chr11 56729991 56730455 -94053098 + LTR2B LTR ERV1 2 490 0 612 50 0 0 chr11 56730455 56730535 -94053018 + (GGAA)n Simple_repeat Simple_repeat 2 81 0 305 276 92 68 chr11 56730561 56730855 -94052698 + L1MEc LINE L1 1476 1776 -4439 28 48 0 0 chr11 56730908 56730950 -94052603 + AT_rich Low_complexity Low_complexity 1 42 0 1267 270 72 17 chr11 56730969 56731694 -94051859 + L1MEc LINE L1 2299 3063 -3152 331 154 0 0 chr11 56731755 56731807 -94051746 - L1MA7 LINE L1 -409 5882 5831 316 159 0 0 chr11 56731807 56731868 -94051685 + L1MA5 LINE L1 6237 6299 -1 282 179 77 13 chr11 56731879 56731957 -94051596 - L1M2 LINE L1 -426 5865 5783 4851 111 14 1 chr11 56732014 56732727 -94050826 + LTR30 LTR ERV1 1 722 0 1474 151 75 3 chr11 56732789 56732818 -94050735 - L1P4 LINE L1 -358 5808 5783 453 14 58 0 chr11 56732818 56732887 -94050666 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 1474 151 75 3 chr11 56732887 56733142 -94050411 - L1P4 LINE L1 -383 5783 5509 2128 164 32 12 chr11 56733145 56733553 -94050000 + L1MA9 LINE L1 5897 6312 0 271 294 111 20 chr11 56734080 56734233 -94049320 + ERVL LTR ERVL 4221 4387 -1098 362 282 64 0 chr11 56734355 56734465 -94049088 + ERVL LTR ERVL 4573 4689 -1075 185 286 0 0 chr11 56734493 56734535 -94049018 + MIR SINE MIR 220 261 -1 476 369 0 12 chr11 56734797 56734965 -94048588 - LTR16A LTR ERVL -282 168 3 1876 161 3 7 chr11 56736601 56736906 -94046647 + AluSx SINE Alu 1 304 -8 536 328 66 26 chr11 56737640 56737945 -94045608 + L1MEc LINE L1 1670 1986 -4410 785 286 42 13 chr11 56737956 56738194 -94045359 + MLT1E LTR MaLR 349 593 0 906 240 62 99 chr11 56738194 56738869 -94044684 + L1MEc LINE L1 2905 3554 -2661 356 275 104 46 chr11 56738859 56739273 -94044280 + L1MEc LINE L1 4259 4696 -1519 * 970 259 62 33 chr11 56739289 56739808 -94043745 + MLT1H1 LTR MaLR 59 555 0 26496 119 36 16 chr11 56741032 56746373 -94037180 + L1PA8 LINE L1 726 6170 -2 317 327 0 0 chr11 56746391 56746492 -94037061 + ERVL LTR ERVL 4572 4672 -1092 255 322 70 47 chr11 56746825 56746996 -94036557 - LTR16A LTR ERVL -275 175 1 1684 158 4 7 chr11 56747730 56748003 -94035550 - AluSx SINE Alu -1 311 40 710 76 45 19 chr11 56749033 56749190 -94034363 + (TA)n Simple_repeat Simple_repeat 2 162 0 2160 154 48 19 chr11 56750309 56750724 -94032829 + MSTA LTR MaLR 2 428 0 8036 192 38 19 chr11 56750727 56752322 -94031231 + MSTA-int LTR MaLR 5 1629 -22 1934 199 38 14 chr11 56752367 56752785 -94030768 + MSTA LTR MaLR 1 428 0 36096 74 3 1 chr11 56753150 56757960 -94025593 + L1P LINE L1 1 4818 -1328 10723 96 7 4 chr11 56758064 56760421 -94023132 + L1PA8 LINE L1 3786 6170 -2 317 327 0 0 chr11 56760439 56760540 -94023013 + ERVL LTR ERVL 4572 4672 -1092 255 322 70 47 chr11 56760873 56761044 -94022509 - LTR16A LTR ERVL -275 175 1 1684 158 4 7 chr11 56761778 56762051 -94021502 - AluSx SINE Alu -1 311 40 6561 53 5 0 chr11 56762803 56763652 -94019901 - L1P LINE L1 -2475 3671 2819 1406 148 5 5 chr11 56763986 56764202 -94019351 + AluSg SINE Alu 1 216 -94 6614 30 6 0 chr11 56764567 56765371 -94018182 - L1P LINE L1 -1475 4671 3863 7564 30 2 0 chr11 56765371 56766817 -94016736 + L1PA3 LINE L1 4708 6155 0 626 44 0 33 chr11 56767020 56767111 -94016442 + (A)n Simple_repeat Simple_repeat 1 88 0 11171 54 1 4 chr11 56767233 56768670 -94014883 + L1P LINE L1 3966 5397 -749 2019 236 49 8 chr11 56768807 56769401 -94014152 + L1ME1 LINE L1 4439 5056 -1090 210 37 0 0 chr11 56769494 56769521 -94014032 + (TATG)n Simple_repeat Simple_repeat 2 28 0 365 226 176 69 chr11 56769797 56770115 -94013438 + L1M4 LINE L1 2986 3337 -2809 473 163 93 0 chr11 56770219 56770305 -94013248 + U3 snRNA snRNA 3 96 -121 5802 158 47 19 chr11 56770313 56771455 -94012098 - Ricksha_a DNA DNA -7 1174 1 1091 203 124 57 chr11 56772380 56772854 -94010699 + L1ME1 LINE L1 5653 6158 -8 2483 88 0 9 chr11 56773429 56773760 -94009793 + THE1B LTR MaLR 26 353 -11 1619 124 3 101 chr11 56773761 56774068 -94009485 + LTR12 LTR ERV1 1 277 -437 304 252 58 0 chr11 56774068 56774171 -94009382 + LTR30 LTR ERV1 544 652 -70 634 137 84 76 chr11 56774172 56774303 -94009250 + pTR5 LTR ERV1 306 437 -2001 * 9645 136 8 18 chr11 56774286 56775836 -94007717 + HERV9 LTR ERV1 55 1588 -6811 207 0 0 0 chr11 56775993 56776016 -94007537 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 771 168 0 0 chr11 56776016 56776135 -94007418 - AluJb SINE Alu -193 119 1 3563 234 84 16 chr11 56776143 56777305 -94006248 - L1PA15-16 LINE L1 -3542 3307 2055 6701 204 26 40 chr11 56777415 56779193 -94004360 + L1 LINE L1 2286 4039 -2107 959 183 44 16 chr11 56779221 56779473 -94004080 + L1PA13 LINE L1 1776 2034 -4753 420 257 198 31 chr11 56779584 56779806 -94003747 - L2 LINE L2 -220 3093 2835 3388 204 17 5 chr11 56779997 56780776 -94002777 - L1 LINE L1 -1650 4496 3709 1419 186 4 4 chr11 56780775 56781055 -94002498 + L1 LINE L1 4497 4776 -1370 * 26 30 0 0 chr11 56782033 56782066 -94001487 + AT_rich Low_complexity Low_complexity 1 33 0 321 47 0 0 chr11 56782156 56782199 -94001354 + (TG)n Simple_repeat Simple_repeat 1 43 0 217 333 0 0 chr11 56782395 56782467 -94001086 - MIR SINE MIR -46 216 145 188 281 105 0 chr11 56782473 56782530 -94001023 - MIR SINE MIR -61 201 139 186 323 121 20 chr11 56782963 56783062 -94000491 - MIR SINE MIR -50 212 104 * 341 291 14 21 chr11 56783053 56783194 -94000359 - MIR SINE MIR -3 259 120 227 309 25 0 chr11 56783466 56783547 -94000006 + L3 LINE CR1 582 664 -913 358 341 138 15 chr11 56783665 56783840 -93999713 + L3 LINE CR1 1089 1241 -336 2024 106 37 4 chr11 56783840 56784232 -93999321 + AluSq SINE Alu 1 401 0 358 341 138 15 chr11 56784232 56784380 -93999173 + L3 LINE CR1 1241 1453 -124 629 27 0 0 chr11 56784573 56784646 -93998907 - L1PA3 LINE L1 -173 5982 5910 1517 132 26 58 chr11 56784646 56784957 -93998596 - L1MB2 LINE L1 -2 6169 5869 4283 105 7 0 chr11 56784971 56785563 -93997990 - L1P LINE L1 -5550 596 1 26 74 0 0 chr11 56786144 56786198 -93997355 + AT_rich Low_complexity Low_complexity 1 54 0 24 85 0 0 chr11 56786703 56786762 -93996791 + AT_rich Low_complexity Low_complexity 1 59 0 511 291 184 9 chr11 56786860 56787083 -93996470 + MIR SINE MIR 1 262 0 7078 50 16 1 chr11 56788047 56789024 -93994529 + L1PA5 LINE L1 5164 6153 -1 2565 206 8 6 chr11 56789025 56789558 -93993995 + L1MA5 LINE L1 5497 6030 -270 38 22 0 0 chr11 56789720 56789765 -93993788 + AT_rich Low_complexity Low_complexity 1 45 0 2369 82 0 0 chr11 56789765 56790057 -93993496 - AluSc SINE Alu -17 292 1 428 245 9 0 chr11 56790454 56790560 -93992993 - MIR SINE MIR -50 212 106 278 296 0 28 chr11 56790702 56790810 -93992743 + (TTCA)n Simple_repeat Simple_repeat 3 107 0 242 339 42 17 chr11 56791485 56791603 -93991950 + MER5A DNA MER1_type 64 184 -5 1349 185 4 0 chr11 56792192 56792457 -93991096 - L1P LINE L1 -1215 4931 4666 * 1527 199 79 58 chr11 56792456 56792565 -93990988 + L1M4 LINE L1 3117 3222 -4343 1568 214 0 3 chr11 56792565 56792860 -93990693 + AluJo SINE Alu 5 298 -14 1527 199 79 58 chr11 56792860 56793601 -93989952 + L1M4 LINE L1 3222 3986 -3579 628 196 0 0 chr11 56793621 56793718 -93989835 - Charlie3 DNA MER1_type -8 2702 2606 2559 257 36 8 chr11 56793818 56794743 -93988810 - L1M4 LINE L1 -2312 3834 2884 1643 114 4 15 chr11 56794744 56795006 -93988547 - L1PA13 LINE L1 -1 6162 5904 906 181 20 0 chr11 56795109 56795258 -93988295 + FRAM SINE Alu 8 159 -17 2938 224 29 8 chr11 56795259 56795987 -93987566 + L1MB7 LINE L1 5432 6174 -10 832 234 60 15 chr11 56796000 56796265 -93987288 + L1M4 LINE L1 6367 6643 -922 398 331 28 33 chr11 56797527 56797708 -93985845 + MIR SINE MIR 35 214 -48 263 339 25 17 chr11 56797785 56797903 -93985650 + MIR3 SINE MIR 85 203 -5 9478 127 21 17 chr11 56799391 56801164 -93982389 - L1P3 LINE L1 -4324 2137 350 746 266 44 55 chr11 56801311 56801604 -93981949 + L1M3c LINE L1 959 1248 -5850 507 231 15 13 chr11 56801617 56801782 -93981771 + L1M3c LINE L1 1903 2059 -5032 568 267 82 47 chr11 56801930 56802248 -93981305 - MER88 LTR ERVL -130 334 6 1229 241 63 5 chr11 56802252 56802679 -93980874 + L1M3c LINE L1 2066 2517 -4581 1463 177 18 39 chr11 56802796 56802865 -93980688 - L1MA7 LINE L1 0 6291 6222 2721 175 49 13 chr11 56802865 56803396 -93980157 - MER44D DNA MER2_type 0 605 1 1463 177 18 39 chr11 56803396 56803659 -93979894 - L1MA7 LINE L1 -69 6222 5966 343 48 0 0 chr11 56803663 56803705 -93979848 - L1M2 LINE L1 -552 5739 5698 577 303 132 36 chr11 56803773 56804129 -93979424 + L2 LINE L2 2891 3280 -33 180 0 0 0 chr11 56804391 56804411 -93979142 + (CA)n Simple_repeat Simple_repeat 2 21 0 2320 206 76 2 chr11 56804411 56804964 -93978589 + L1P LINE L1 4801 5394 -752 * 2953 155 91 20 chr11 56804963 56805765 -93977788 + L1P4 LINE L1 4685 5525 -643 2041 88 4 4 chr11 56806160 56806433 -93977120 + AluSx SINE Alu 1 273 -39 1767 137 3 19 chr11 56806450 56806757 -93976796 + AluSc SINE Alu 1 302 -7 1677 0 0 0 chr11 56806887 56807074 -93976479 - L1PA3 LINE L1 -188 5967 5781 780 30 0 30 chr11 56807074 56807161 -93976392 + L1PA3 LINE L1 6058 6154 -1 1286 248 79 7 chr11 56807455 56807887 -93975666 - L1MC3 LINE L1 -123 7662 7200 349 216 0 14 chr11 56807895 56807969 -93975584 - MLT1F1 LTR MaLR -442 125 53 1046 264 50 68 chr11 56808038 56808535 -93975018 - L1MC3 LINE L1 -1076 6709 6222 1010 164 42 28 chr11 56808645 56808859 -93974694 + L1MA9 LINE L1 6058 6274 -38 1500 99 0 0 chr11 56809600 56809791 -93973762 + AluSc SINE Alu 103 293 -16 331 389 23 14 chr11 56810563 56810779 -93972774 - MIR SINE MIR -41 221 4 293 354 10 10 chr11 56810947 56811043 -93972510 + MIR SINE MIR 17 112 -150 186 43 0 0 chr11 56811083 56811106 -93972447 + (TG)n Simple_repeat Simple_repeat 1 23 0 3399 242 39 32 chr11 56811892 56812937 -93970616 - L1PA15-16 LINE L1 -4080 2769 1718 3174 88 14 5 chr11 56813051 56813496 -93970057 + L1PA7 LINE L1 5699 6147 -7 231 256 13 13 chr11 56813573 56813651 -93969902 + (TA)n Simple_repeat Simple_repeat 1 78 0 1123 173 28 0 chr11 56814290 56814469 -93969084 - L1PA15-16 LINE L1 -6272 577 394 3213 186 26 4 chr11 56814592 56815285 -93968268 + L1 LINE L1 4623 5330 -816 255 194 32 0 chr11 56815301 56815363 -93968190 + L1PBa LINE L1 6 69 -6794 1191 233 4 17 chr11 56815599 56815835 -93967718 + Tigger7 DNA MER2_type 2 234 -471 494 155 0 72 chr11 56815833 56815930 -93967623 + Tigger7 DNA MER2_type 2398 2487 0 * 872 296 103 10 chr11 56816185 56816691 -93966862 - L1M4 LINE L1 -3393 3251 2699 237 284 78 0 chr11 56816873 56816975 -93966578 - MER103 DNA DNA -54 112 3 263 343 60 55 chr11 56817072 56817272 -93966281 + MIR SINE MIR 18 216 -46 427 100 200 0 chr11 56817666 56817746 -93965807 + L1MA7 LINE L1 6196 6291 0 197 295 89 62 chr11 56818076 56818188 -93965365 - L2 LINE L2 -2 3311 3197 446 290 93 32 chr11 56818194 56818416 -93965137 - MIR SINE MIR 0 262 25 301 213 67 49 chr11 56819462 56819626 -93963927 - L1M4 LINE L1 -5201 1341 1175 779 286 96 20 chr11 56819633 56820038 -93963515 + L1M4 LINE L1 4457 4892 -1254 541 254 16 0 chr11 56820041 56820167 -93963386 + MSTC LTR MaLR 1 128 -300 1821 159 11 14 chr11 56820267 56820631 -93962922 + L1MA5 LINE L1 5928 6290 -10 4263 256 6 30 chr11 56821007 56822020 -93961533 + L1MA4 LINE L1 5301 6289 -11 341 296 63 14 chr11 56822045 56822187 -93961366 - MIR3 SINE MIR -11 197 49 253 396 27 20 chr11 56822663 56822812 -93960741 + L2 LINE L2 2936 3085 -187 515 221 7 62 chr11 56823041 56823186 -93960367 - MER20 DNA MER1_type -82 137 1 610 118 21 0 chr11 56824029 56824122 -93959431 - MLT1B LTR MaLR 0 390 296 4011 234 44 3 chr11 56824223 56825286 -93958267 - L1P LINE L1 -1896 4250 3144 7179 35 1 0 chr11 56825388 56826788 -93956765 - L1PA3 LINE L1 -46 6109 4708 7144 31 6 1 chr11 56826782 56827657 -93955896 + L1PA3 LINE L1 3857 4735 -1411 * 547 251 209 0 chr11 56827963 56828178 -93955375 - MIR SINE MIR 0 262 3 1913 143 3 3 chr11 56830466 56830759 -93952794 + AluSg SINE Alu 1 293 -17 466 317 30 30 chr11 56832949 56833116 -93950437 + LTR16A LTR ERVL 9 175 -275 528 339 57 19 chr11 56833451 56833933 -93949620 - MERVL LTR ERVL -875 4610 4120 355 306 78 34 chr11 56834070 56834364 -93949189 - MERVL LTR ERVL -1761 4003 3697 1730 196 40 5 chr11 56834413 56834817 -93948736 - L1MA9 LINE L1 -3 6309 5892 1012 229 75 0 chr11 56834817 56835084 -93948469 + L1MA9 LINE L1 5514 5800 -512 349 232 21 21 chr11 56835099 56835194 -93948359 - L1MA9 LINE L1 -200 6112 6018 431 218 0 0 chr11 56835217 56835304 -93948249 + L1MA9 LINE L1 5783 5869 -443 263 215 0 0 chr11 56835321 56835386 -93948167 - L1MA7 LINE L1 0 6291 6227 300 173 0 0 chr11 56835386 56835438 -93948115 + L1MB1 LINE L1 5834 5885 -304 360 291 21 0 chr11 56835504 56835645 -93947908 - L1M4 LINE L1 -3161 2985 2842 1709 173 42 31 chr11 56835658 56835795 -93947758 - L1PB1 LINE L1 -1 6150 6014 530 274 48 52 chr11 56835795 56836012 -93947541 - L1MA4A LINE L1 -289 6014 5797 417 20 0 0 chr11 56836012 56836062 -93947491 + (TA)n Simple_repeat Simple_repeat 2 51 0 530 274 48 52 chr11 56836062 56836096 -93947457 - L1MA4A LINE L1 -506 5797 5764 391 219 0 0 chr11 56836119 56836215 -93947338 - L1MA9 LINE L1 -202 6110 6015 378 169 42 0 chr11 56836247 56836318 -93947235 + L1MA9 LINE L1 5790 5863 -449 337 113 0 42 chr11 56836340 56836411 -93947142 - L1MA7 LINE L1 0 6291 6224 251 200 0 0 chr11 56836411 56836456 -93947097 + L1M3 LINE L1 5840 5884 -450 898 264 36 9 chr11 56836515 56836844 -93946709 - L1MEd LINE L1 -3152 2977 2640 393 260 107 14 chr11 56836886 56837167 -93946386 - L1MEd LINE L1 -3611 2518 2212 621 296 115 57 chr11 56837428 56837707 -93945846 - L1MEd LINE L1 -4439 1690 1429 1685 68 44 12 chr11 56837707 56837959 -93945594 - L1PA6 LINE L1 0 6154 5895 621 296 115 57 chr11 56837959 56838000 -93945553 - L1MEd LINE L1 -4700 1429 1392 1860 161 6 3 chr11 56838000 56838311 -93945242 - AluSx SINE Alu 0 312 1 621 296 115 57 chr11 56838311 56838817 -93944736 - L1MEd LINE L1 -4737 1392 813 570 211 0 0 chr11 56839320 56839429 -93944124 - FLAM_A SINE Alu -11 131 23 1715 140 91 20 chr11 56839437 56839787 -93943766 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr11 56842246 56842274 -93941279 + AT_rich Low_complexity Low_complexity 1 28 0 611 276 55 51 chr11 56843700 56843957 -93939596 - MIR SINE MIR 0 262 5 42 0 0 0 chr11 56844099 56844141 -93939412 + AT_rich Low_complexity Low_complexity 1 42 0 189 339 32 0 chr11 56844194 56844256 -93939297 - MIR3 SINE MIR -27 181 118 188 211 113 70 chr11 56844898 56844969 -93938584 + L2 LINE L2 3164 3237 -76 41219 44 23 1 chr11 56845018 56851033 -93932520 + L1PA2 LINE L1 3 6151 -4 1352 112 33 0 chr11 56851311 56851526 -93932027 + L1MA7 LINE L1 6070 6291 0 22 0 0 0 chr11 56853529 56853551 -93930002 + AT_rich Low_complexity Low_complexity 1 22 0 723 297 113 33 chr11 56853891 56854368 -93929185 - MLT1H1 LTR MaLR -33 522 53 423 250 133 50 chr11 56854369 56854789 -93928764 - L1M4 LINE L1 -1503 4643 4189 1048 288 48 15 chr11 56854864 56855405 -93928148 - L1M4 LINE L1 -2755 3391 2833 683 281 59 18 chr11 56855408 56855629 -93927924 - MLT1E LTR MaLR -2 591 362 1233 106 0 0 chr11 56856175 56856345 -93927208 - THE1A LTR MaLR 0 355 186 388 94 0 0 chr11 56856334 56856387 -93927166 - THE1A LTR MaLR -302 53 1 * 297 188 0 0 chr11 56858937 56859017 -93924536 + T-rich Low_complexity Low_complexity 1 80 0 658 230 198 0 chr11 56859538 56859755 -93923798 - MIR SINE MIR 0 262 3 36 0 0 0 chr11 56859890 56859926 -93923627 + AT_rich Low_complexity Low_complexity 1 36 0 7637 23 0 0 chr11 56861527 56862883 -93920670 - L1PA3 LINE L1 0 6155 4796 2210 47 0 0 chr11 56862883 56863157 -93920396 + L1P LINE L1 4327 4600 -1546 1675 144 56 4 chr11 56863641 56863911 -93919642 + AluSg SINE Alu 1 284 -26 446 319 24 35 chr11 56866139 56866308 -93917245 + LTR16A LTR ERVL 9 175 -275 21 36 0 0 chr11 56866384 56866412 -93917141 + AT_rich Low_complexity Low_complexity 1 28 0 360 355 64 14 chr11 56866648 56866868 -93916685 - ERVL LTR ERVL -1095 4669 4439 1761 173 38 34 chr11 56867604 56868021 -93915532 - L1MA9 LINE L1 -2 6310 5892 970 249 50 0 chr11 56868021 56868296 -93915257 + L1MB1 LINE L1 5514 5805 -486 380 206 11 22 chr11 56868307 56868399 -93915154 - L1MA9 LINE L1 -201 6111 6021 433 217 0 0 chr11 56868427 56868510 -93915043 + L1MB1 LINE L1 5783 5865 -447 303 161 0 0 chr11 56868531 56868593 -93914960 - L1MA7 LINE L1 0 6291 6230 321 146 0 1 chr11 56868596 56868651 -93914902 + L1MB1 LINE L1 5834 5887 -269 484 243 29 0 chr11 56868716 56868856 -93914697 - L1M4 LINE L1 -3161 2985 2842 2350 139 54 44 chr11 56868869 56869237 -93914316 - L1PB1 LINE L1 -1 6150 5774 180 0 0 0 chr11 56869237 56869257 -93914296 + (TA)n Simple_repeat Simple_repeat 2 21 0 2350 139 54 44 chr11 56869257 56869390 -93914163 - L1PB1 LINE L1 -377 5774 5644 839 76 0 0 chr11 56869390 56869508 -93914045 + L1PA8 LINE L1 5853 5970 -202 * 1737 119 14 7 chr11 56869506 56869792 -93913761 - L1PB1 LINE L1 -508 5643 5356 725 167 200 45 chr11 56869764 56870009 -93913544 - L1M4 LINE L1 -1195 4951 4669 * 628 289 48 58 chr11 56870020 56870187 -93913366 - L1MC4 LINE L1 -180 7862 7695 387 292 83 0 chr11 56870187 56870307 -93913246 - FLAM_A SINE Alu -3 130 1 628 289 48 58 chr11 56870307 56870551 -93913002 - L1MC4 LINE L1 -347 7695 7455 364 367 127 0 chr11 56870566 56870811 -93912742 + LTR16A LTR ERVL 172 447 -3 26 74 0 0 chr11 56871688 56871742 -93911811 + AT_rich Low_complexity Low_complexity 1 54 0 25 31 0 0 chr11 56872579 56872611 -93910942 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr11 56873343 56873378 -93910175 + AT_rich Low_complexity Low_complexity 1 35 0 1872 190 110 2 chr11 56873431 56873841 -93909712 - L1MB4 LINE L1 -86 6094 5641 344 22 22 0 chr11 56875517 56875562 -93907991 + (TG)n Simple_repeat Simple_repeat 2 47 0 180 304 0 0 chr11 56875672 56875718 -93907835 - L2 LINE L2 -8 3264 3219 21 36 0 0 chr11 56877478 56877506 -93906047 + AT_rich Low_complexity Low_complexity 1 28 0 591 167 24 54 chr11 56877514 56877682 -93905871 - L1MA7 LINE L1 -1 6290 6128 983 267 59 85 chr11 56879054 56879593 -93903960 - MLT1H1 LTR MaLR 0 555 31 2387 109 42 13 chr11 56880277 56880638 -93902915 - THE1C LTR MaLR -7 419 1 4828 121 29 7 chr11 56880638 56881359 -93902194 - THE1C-int LTR MaLR 0 1580 844 1028 168 0 0 chr11 56881691 56881852 -93901701 - MER44D DNA MER2_type -1 604 572 943 265 171 41 chr11 56881858 56882561 -93900992 + LTR1B LTR ERV1 33 826 0 3118 176 25 4 chr11 56882561 56883113 -93900440 - MER44D DNA MER2_type -129 576 13 1696 196 20 0 chr11 56883114 56883415 -93900138 + AluJb SINE Alu 3 309 -3 4018 46 14 0 chr11 56883661 56884159 -93899394 - L1PA4 LINE L1 -3 6152 5648 3663 107 11 97 chr11 56884218 56884916 -93898637 - L1MA5A LINE L1 -3 6294 5657 2960 113 30 34 chr11 56884925 56884938 -93898615 + LTR15 LTR ERV1 1 13 -480 5934 42 1 0 chr11 56884938 56885661 -93897892 + L1PA4 LINE L1 5424 6147 -8 2960 113 30 34 chr11 56885661 56886142 -93897411 + LTR15 LTR ERV1 13 493 0 8029 107 60 17 chr11 56886142 56887385 -93896168 + HERV15 LTR ERV1 1 1296 -7439 * 13865 126 8 6 chr11 56887370 56889462 -93894091 + HERV15 LTR ERV1 2313 4407 -4328 240 314 32 40 chr11 56890512 56890636 -93892917 + L3 LINE CR1 1450 1572 -5 184 245 20 0 chr11 56891812 56891861 -93891692 - MIR3 SINE MIR -1 207 158 339 340 33 16 chr11 56892007 56892310 -93891243 - L1ME4a LINE L1 -199 5922 5615 2054 134 10 3 chr11 56892577 56892884 -93890669 - AluSg SINE Alu -1 309 1 2067 130 7 3 chr11 56893530 56893822 -93889731 + AluSx SINE Alu 3 295 -17 214 204 0 0 chr11 56894092 56894136 -93889417 - L2 LINE L2 -8 3264 3221 189 301 0 27 chr11 56895869 56895942 -93887611 - MIR SINE MIR -6 256 186 997 60 17 34 chr11 56896260 56896494 -93887059 + (TTTC)n Simple_repeat Simple_repeat 1 230 0 234 248 129 0 chr11 56896494 56896595 -93886958 + L1ME LINE L1 5692 5805 -316 205 125 21 21 chr11 56896597 56896645 -93886908 + CT-rich Low_complexity Low_complexity 2 49 0 793 140 28 17 chr11 56896656 56896834 -93886719 + CT-rich Low_complexity Low_complexity 1 180 0 375 121 0 0 chr11 56896832 56896890 -93886663 + (TCCCC)n Simple_repeat Simple_repeat 3 60 0 * 313 301 57 57 chr11 56897315 56897438 -93886115 - MIR SINE MIR -61 147 25 934 139 46 46 chr11 56898567 56898740 -93884813 + MSTA LTR MaLR 255 427 -1 455 213 31 39 chr11 56898751 56898878 -93884675 + MER106A DNA MER1_type 110 235 -1 1821 166 3 3 chr11 56899149 56899439 -93884114 + AluJb SINE Alu 14 303 -9 41366 44 25 1 chr11 56900287 56906288 -93877265 - L1PA3 LINE L1 -1 6154 6 207 355 160 12 chr11 56907665 56907834 -93875719 + MIR SINE MIR 67 260 -2 349 304 45 45 chr11 56907964 56908395 -93875158 + L1M2 LINE L1 5403 5837 -307 35 0 0 0 chr11 56908435 56908470 -93875083 + AT_rich Low_complexity Low_complexity 1 35 0 582 139 28 0 chr11 56908544 56908652 -93874901 - L1MA7 LINE L1 -4 6287 6177 195 42 0 0 chr11 56908991 56909015 -93874538 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 8126 98 4 6 chr11 56909015 56911046 -93872507 - L1PA8 LINE L1 -24 6148 4123 21 0 0 0 chr11 56911049 56911070 -93872483 + AT_rich Low_complexity Low_complexity 1 21 0 8424 43 3 0 chr11 56911070 56912880 -93870673 - L1PA4 LINE L1 -3 6152 4335 5321 35 0 0 chr11 56912880 56913517 -93870036 + L1PA4 LINE L1 3724 4360 -1786 429 250 19 0 chr11 56913580 56913688 -93869865 - MIR SINE MIR -43 219 110 48 18 0 0 chr11 56913911 56913966 -93869587 + AT_rich Low_complexity Low_complexity 1 55 0 945 144 150 6 chr11 56914530 56914710 -93868843 - Tigger5 DNA MER2_type -6 2317 2112 245 318 0 0 chr11 56914718 56914784 -93868769 - Tigger5 DNA MER2_type -2019 304 239 1744 178 3 10 chr11 56914784 56915088 -93868465 + AluJb SINE Alu 1 302 -10 26 0 0 0 chr11 56915407 56915433 -93868120 + AT_rich Low_complexity Low_complexity 1 26 0 251 276 38 29 chr11 56915929 56916034 -93867519 + MIR SINE MIR 137 242 -20 22376 33 1 0 chr11 56916451 56919330 -93864223 - L1P1 LINE L1 -634 5521 2640 3952 18 0 0 chr11 56919330 56919777 -93863776 + L1PA2 LINE L1 5624 6070 -85 342 320 20 40 chr11 56919872 56920022 -93863531 - MIR3 SINE MIR -46 162 16 289 284 74 56 chr11 56920441 56920603 -93862950 + MIR SINE MIR 88 252 -10 194 330 11 32 chr11 56921132 56921226 -93862327 + MIR SINE MIR 37 128 -80 313 315 94 7 chr11 56921546 56921695 -93861858 - LTR16C LTR ERVL -2 489 328 1355 164 99 19 chr11 56923102 56923365 -93860188 - AluJb SINE Alu -26 286 3 189 0 0 0 chr11 56923505 56923526 -93860027 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 312 364 78 37 chr11 56923581 56923955 -93859598 + L2 LINE L2 2921 3309 -4 669 165 0 47 chr11 56924248 56924375 -93859178 + FLAM_A SINE Alu 2 122 -11 2007 117 11 0 chr11 56924665 56924948 -93858605 + AluSg SINE Alu 6 291 -19 330 26 0 0 chr11 56924956 56924995 -93858558 + (CA)n Simple_repeat Simple_repeat 2 40 0 39 80 0 0 chr11 56924995 56925083 -93858470 + AT_rich Low_complexity Low_complexity 1 88 0 521 329 125 45 chr11 56925120 56925585 -93857968 - L2 LINE L2 0 3313 2812 1277 145 48 24 chr11 56925665 56925872 -93857681 - THE1B LTR MaLR 0 364 153 2010 149 42 3 chr11 56925872 56926208 -93857345 - MSTA-int LTR MaLR -1229 351 3 1993 158 129 8 chr11 56926210 56926590 -93856963 - MSTA LTR MaLR 0 428 3 641 165 16 0 chr11 56926677 56926798 -93856755 + L1PB4 LINE L1 6031 6153 -3 1761 138 0 44 chr11 56926974 56927270 -93856283 + AluJo SINE Alu 7 289 -23 1446 292 322 29 chr11 56927930 56929182 -93854371 + L2 LINE L2 1380 2997 -316 2043 130 0 7 chr11 56929215 56929507 -93854046 - AluSx SINE Alu -22 290 1 1447 194 29 39 chr11 56930993 56931302 -93852251 - AluJo SINE Alu -6 306 1 362 207 90 18 chr11 56931723 56931834 -93851719 + L1MC5 LINE L1 7793 7911 -50 257 302 0 28 chr11 56931965 56932071 -93851482 + L1ME3A LINE L1 6068 6170 0 23 33 0 0 chr11 56932236 56932266 -93851287 + AT_rich Low_complexity Low_complexity 1 30 0 483 346 49 21 chr11 56933040 56933283 -93850270 + MIR SINE MIR 12 261 -1 2017 143 6 16 chr11 56933819 56934134 -93849419 + AluSq SINE Alu 1 312 -1 21 0 0 0 chr11 56935238 56935259 -93848294 + AT_rich Low_complexity Low_complexity 1 21 0 309 319 104 35 chr11 56935329 56935617 -93847936 - L1ME4a LINE L1 -265 5856 5549 896 235 52 0 chr11 56935960 56936211 -93847342 - L1MD3 LINE L1 -1 7994 7731 6165 27 0 1 chr11 56936369 56937116 -93846437 - L1HS LINE L1 -781 5365 4620 7124 1 0 2 chr11 56937116 56937913 -93845640 + L1HS LINE L1 5361 6155 0 285 100 0 0 chr11 56937921 56937971 -93845582 + (A)n Simple_repeat Simple_repeat 1 50 0 189 0 0 0 chr11 56938250 56938271 -93845282 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 3110 45 0 0 chr11 56938284 56938663 -93844890 - L1PA5 LINE L1 -6 6148 5770 1635 58 0 0 chr11 56938672 56938878 -93844675 - L1PA4 LINE L1 -4 6151 5946 299 269 61 96 chr11 56939011 56939208 -93844345 - MIR SINE MIR -51 211 22 220 287 172 16 chr11 56940194 56940316 -93843237 + MIR SINE MIR 12 152 -110 539 294 0 6 chr11 56940681 56940844 -93842709 - MER117 DNA MER1_type -34 163 2 3564 140 24 5 chr11 56942200 56943014 -93840539 + HERVH48 LTR ERV1 3384 4250 -2404 * 11280 120 39 4 chr11 56943004 56944681 -93838872 + HERVH48 LTR ERV1 4919 6654 0 1004 144 0 7 chr11 56944681 56944834 -93838719 + MER48 LTR ERV1 1 152 -235 1799 121 4 0 chr11 56944879 56945128 -93838425 + MER48 LTR ERV1 138 387 0 1302 109 136 0 chr11 56945130 56945351 -93838202 - MER4A-int LTR ERV1 -6347 251 1 1611 153 3 77 chr11 56945355 56945728 -93837825 - MER4A LTR ERV1 0 664 261 1568 126 102 26 chr11 56946080 56946450 -93837103 + LTR7 LTR ERV1 1 450 0 1012 195 36 7 chr11 56946450 56946739 -93836814 + HERVH LTR ERV1 1 332 -7381 * 8099 243 63 47 chr11 56946725 56949598 -93833955 + HERVH LTR ERV1 2100 5020 -2693 3190 120 14 16 chr11 56949588 56950105 -93833448 + HERVH LTR ERV1 7198 7713 0 * 2061 176 43 25 chr11 56950105 56950547 -93833006 + LTR7 LTR ERV1 1 450 0 21 0 0 0 chr11 56951119 56951140 -93832413 + AT_rich Low_complexity Low_complexity 1 21 0 230 209 0 0 chr11 56951880 56951923 -93831630 + L1ME LINE L1 5682 5724 -446 292 143 18 0 chr11 56952561 56952617 -93830936 + L1PA16 LINE L1 6088 6144 -22 1772 174 17 20 chr11 56953128 56953472 -93830081 - MER61A LTR ERV1 0 343 1 180 283 25 158 chr11 56953665 56953785 -93829768 - L2 LINE L2 -1 3271 3168 21 0 0 0 chr11 56953875 56953896 -93829657 + AT_rich Low_complexity Low_complexity 1 21 0 5840 37 0 23 chr11 56953898 56954372 -93829181 - L1PA5 LINE L1 -8 6146 5693 2460 19 0 0 chr11 56954372 56954643 -93828910 - AluYa5 SINE Alu -6 305 35 5840 37 0 23 chr11 56954643 56954894 -93828659 - L1PA5 LINE L1 -461 5693 5438 185 65 32 0 chr11 56956562 56956593 -93826960 + (TA)n Simple_repeat Simple_repeat 2 33 0 299 104 26 26 chr11 56956616 56956693 -93826860 + (TA)n Simple_repeat Simple_repeat 2 78 0 3323 73 170 4 chr11 56956936 56957443 -93826110 + LTR10C LTR ERV1 1 591 0 21 57 0 0 chr11 56958221 56958256 -93825297 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chr11 56958399 56958440 -93825113 + AT_rich Low_complexity Low_complexity 1 41 0 10688 134 50 14 chr11 56960464 56962427 -93821126 - MER4-int LTR ERV1 -648 5950 3918 807 157 25 89 chr11 56962465 56962701 -93820852 - MER4-int LTR ERV1 -4539 2219 1999 2910 128 51 94 chr11 56962702 56963305 -93820248 - LTR14B LTR ERVK 0 608 32 1607 101 25 0 chr11 56963305 56963583 -93819970 - MER4-int LTR ERV1 -3577 3021 2737 1023 189 137 9 chr11 56963583 56963810 -93819743 + LTR8 LTR ERV1 1 256 -435 2393 123 9 0 chr11 56963815 56964157 -93819396 + L1P LINE L1 9 353 -5793 15130 55 3 0 chr11 56964158 56966847 -93816706 + L1PA4 LINE L1 3456 6148 -7 1349 255 72 34 chr11 56966859 56966944 -93816609 + L1M1 LINE L1 2766 2846 -4719 189 0 0 0 chr11 56966944 56966965 -93816588 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1349 255 72 34 chr11 56966965 56967965 -93815588 + L1M1 LINE L1 2846 3905 -3660 888 178 49 0 chr11 56967972 56968135 -93815418 + FRAM SINE Alu 1 168 -8 32 43 0 0 chr11 56968143 56968189 -93815364 + AT_rich Low_complexity Low_complexity 1 46 0 4265 201 52 40 chr11 56968265 56968590 -93814963 + L1MC1 LINE L1 4073 4393 -1940 198 0 0 0 chr11 56968590 56968612 -93814941 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1367 199 3 62 chr11 56968620 56968927 -93814626 - AluJo SINE Alu -23 289 1 4265 201 52 40 chr11 56968927 56969731 -93813822 + L1MC1 LINE L1 4399 5192 -1141 2050 154 30 30 chr11 56969731 56970095 -93813458 + THE1B LTR MaLR 1 364 0 4265 201 52 40 chr11 56970095 56970722 -93812831 + L1MC1 LINE L1 5192 5871 -462 1943 143 7 3 chr11 56970722 56971029 -93812524 + AluSg SINE Alu 1 308 -2 4265 201 52 40 chr11 56971029 56971492 -93812061 + L1MC1 LINE L1 5871 6327 -6 744 180 74 67 chr11 56971509 56971880 -93811673 + L1MC/D LINE L1 5115 5505 -758 267 31 0 0 chr11 56972283 56972315 -93811238 + (TTG)n Simple_repeat Simple_repeat 1 32 0 1631 176 14 21 chr11 56972315 56972605 -93810948 + AluJb SINE Alu 3 290 -22 324 135 19 0 chr11 56974174 56974226 -93809327 + MER4A LTR ERV1 261 313 -351 1169 140 0 11 chr11 56974245 56974424 -93809129 + MER4A LTR ERV1 488 664 0 1485 76 124 0 chr11 56974428 56974653 -93808900 + MER4A-int LTR ERV1 1 253 -6345 2263 119 28 96 chr11 56974653 56975080 -93808473 - MER48 LTR ERV1 0 398 1 11663 119 21 3 chr11 56975080 56976766 -93806787 - HERVH48 LTR ERV1 0 6654 4939 11061 155 19 8 chr11 56976768 56979063 -93804490 - HERVH48 LTR ERV1 -2404 4250 1600 41977 56 2 6 chr11 56979064 56985242 -93798311 - L1PA3 LINE L1 0 6155 9 1023 189 137 9 chr11 56985247 56985474 -93798079 - LTR8 LTR ERV1 -435 256 1 1606 94 29 0 chr11 56985474 56985751 -93797802 + MER4B-int LTR ERV1 2737 3021 -3577 2922 126 51 94 chr11 56985751 56986354 -93797199 + LTR14B LTR ERVK 32 608 0 819 153 25 89 chr11 56986355 56986591 -93796962 + MER4B-int LTR ERV1 1999 2219 -4539 10667 134 50 14 chr11 56986629 56988592 -93794961 + MER4B-int LTR ERV1 3918 5950 -648 26 50 0 0 chr11 56990617 56990657 -93792896 + AT_rich Low_complexity Low_complexity 1 40 0 21 57 0 0 chr11 56990800 56990835 -93792718 + AT_rich Low_complexity Low_complexity 1 35 0 3336 71 170 4 chr11 56991613 56992120 -93791433 - LTR10C LTR ERV1 0 591 1 299 104 26 26 chr11 56992363 56992440 -93791113 + (TA)n Simple_repeat Simple_repeat 2 78 0 185 65 32 0 chr11 56992463 56992494 -93791059 + (TA)n Simple_repeat Simple_repeat 2 33 0 1879 37 4 0 chr11 56993599 56993844 -93789709 + L1P LINE L1 5134 5379 -767 1985 139 7 3 chr11 56993946 56994255 -93789298 - AluSg SINE Alu 0 310 1 3677 210 52 42 chr11 56994255 56994882 -93788671 - L1MC1 LINE L1 -480 5853 5234 2050 154 30 30 chr11 56994882 56995246 -93788307 - THE1B LTR MaLR 0 364 1 3677 210 52 42 chr11 56995246 56996050 -93787503 - L1MC1 LINE L1 -1099 5234 4439 1352 202 3 62 chr11 56996050 56996357 -93787196 + AluJo SINE Alu 1 289 -23 198 0 0 0 chr11 56996365 56996387 -93787166 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 3677 210 52 42 chr11 56996387 56996712 -93786841 - L1MC1 LINE L1 -1900 4433 4073 32 43 0 0 chr11 56996788 56996834 -93786719 + AT_rich Low_complexity Low_complexity 1 46 0 873 184 49 0 chr11 56996842 56997005 -93786548 - FRAM SINE Alu -8 168 1 1349 254 72 35 chr11 56997012 56998013 -93785540 - L1 LINE L1 -3660 3905 2846 189 0 0 0 chr11 56998013 56998034 -93785519 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1349 254 72 35 chr11 56998034 56998119 -93785434 - L1 LINE L1 -4719 2846 2766 15197 52 2 0 chr11 56998131 57000820 -93782733 - L1PA4 LINE L1 -7 6148 3456 2461 123 9 0 chr11 57000821 57001171 -93782382 - L1P LINE L1 -5793 353 1 2412 269 44 36 chr11 57001171 57002185 -93781368 - L1M2c LINE L1 -4483 1868 853 507 266 17 40 chr11 57002432 57002605 -93780948 - L1M2c LINE L1 -6111 170 2 911 198 27 11 chr11 57002618 57002919 -93780634 - L1M4c LINE L1 -557 5853 1352 430 362 19 10 chr11 57003698 57003905 -93779648 - MIR SINE MIR -46 216 8 255 125 0 0 chr11 57004598 57004638 -93778915 + (TG)n Simple_repeat Simple_repeat 2 41 0 26 30 0 0 chr11 57004817 57004850 -93778703 + AT_rich Low_complexity Low_complexity 1 33 0 260 292 46 46 chr11 57005346 57005476 -93778077 + L3 LINE CR1 1375 1504 -73 317 192 0 0 chr11 57007156 57007208 -93776345 - Alu SINE Alu -15 285 234 562 304 109 29 chr11 57008337 57008686 -93774867 + L1MC3 LINE L1 5381 5757 -2051 210 71 0 0 chr11 57008767 57008795 -93774758 + (CA)n Simple_repeat Simple_repeat 1 28 0 206 293 190 0 chr11 57009461 57009577 -93773976 + L2 LINE L2 3175 3312 -1 351 100 20 0 chr11 57009754 57009804 -93773749 - MER66B LTR ERV1 -140 346 296 1026 251 61 3 chr11 57010558 57010885 -93772668 + L1MC3 LINE L1 6709 7054 -731 498 186 32 8 chr11 57010906 57011030 -93772523 - L1MA5 LINE L1 -1 6299 6173 32 0 0 0 chr11 57011030 57011062 -93772491 + AT_rich Low_complexity Low_complexity 1 32 0 5382 115 60 6 chr11 57011066 57011099 -93772454 - L1MA1 LINE L1 0 6302 6272 2411 134 0 11 chr11 57011099 57011464 -93772089 + THE1B LTR MaLR 3 363 -1 495 0 0 0 chr11 57011464 57011519 -93772034 + (TA)n Simple_repeat Simple_repeat 1 55 0 5382 115 60 6 chr11 57011519 57012348 -93771205 - L1MA1 LINE L1 -29 6273 5392 723 124 0 0 chr11 57012348 57012453 -93771100 - AluSp/q SINE Alu -17 296 192 2594 43 3 0 chr11 57012674 57012978 -93770575 - AluY SINE Alu -6 305 1 950 145 47 47 chr11 57013705 57013898 -93769655 - L1MA8 LINE L1 -273 6018 5826 613 216 43 19 chr11 57013898 57014027 -93769526 + L1MA8 LINE L1 6123 6258 -33 1599 192 39 9 chr11 57014027 57014360 -93769193 + MER2 DNA MER2_type 1 343 -1 613 216 43 19 chr11 57014360 57014392 -93769161 + L1MA8 LINE L1 6258 6288 -3 258 105 0 0 chr11 57014514 57014552 -93769001 + (TG)n Simple_repeat Simple_repeat 2 39 0 288 239 43 58 chr11 57014569 57014707 -93768846 + MER113 DNA MER1_type? 337 472 -49 243 270 148 0 chr11 57015001 57015116 -93768437 - MIR SINE MIR -26 236 105 1831 148 3 40 chr11 57015766 57016090 -93767463 + AluSx SINE Alu 1 312 0 725 252 53 65 chr11 57016539 57016785 -93766768 + MIR SINE MIR 13 255 -7 718 210 25 6 chr11 57017073 57017230 -93766323 + MLT1C LTR MaLR 5 164 -303 472 72 43 0 chr11 57017255 57017324 -93766229 - MER41A LTR ERV1 -93 461 390 * 1040 214 74 30 chr11 57017319 57017618 -93765935 + MLT1C LTR MaLR 156 467 0 271 336 1 22 chr11 57018714 57018815 -93764738 + MIR SINE MIR 11 110 -98 1039 33 40 0 chr11 57018859 57019010 -93764543 + (TAGA)n Simple_repeat Simple_repeat 2 158 0 8064 102 48 32 chr11 57019011 57020176 -93763377 + HSMAR1 DNA Mariner 1 1189 -98 2096 69 4 0 chr11 57020176 57020450 -93763103 + L1PA8 LINE L1 5886 6160 -12 8064 102 48 32 chr11 57020450 57020546 -93763007 + HSMAR1 DNA Mariner 1189 1282 -5 213 125 62 0 chr11 57020548 57020596 -93762957 + (TA)n Simple_repeat Simple_repeat 1 51 0 5391 150 12 0 chr11 57020813 57021700 -93761853 - L1PA15 LINE L1 -1 6815 5918 23 0 0 0 chr11 57021713 57021736 -93761817 + AT_rich Low_complexity Low_complexity 1 23 0 25788 49 1 0 chr11 57021736 57025763 -93757790 - L1PA4 LINE L1 0 6155 2127 387 171 0 0 chr11 57025762 57025832 -93757721 - L1 LINE L1 -874 5272 5203 * 14148 226 26 44 chr11 57025846 57026739 -93756814 - L1PA15 LINE L1 -908 5889 4981 1952 145 0 3 chr11 57026739 57027028 -93756525 - AluSc SINE Alu -21 288 1 14148 226 26 44 chr11 57027028 57028980 -93754573 - L1PA15 LINE L1 -1816 4981 2995 1765 124 0 29 chr11 57028980 57029253 -93754300 - AluSq SINE Alu -15 298 34 14148 226 26 44 chr11 57029253 57030091 -93753462 - L1PA15 LINE L1 -3802 2995 2143 2650 112 0 3 chr11 57030091 57030456 -93753097 + THE1B LTR MaLR 1 364 0 14148 226 26 44 chr11 57030456 57031058 -93752495 - L1PA15 LINE L1 -4654 2143 1673 290 44 0 22 chr11 57031058 57031103 -93752450 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 14148 226 26 44 chr11 57031103 57031599 -93751954 - L1PA15 LINE L1 -5124 1673 1170 345 186 0 0 chr11 57031635 57031694 -93751859 + HERVL74 LTR ERVL 1163 1221 -4464 5567 132 0 23 chr11 57031727 57032387 -93751166 - L1PA13 LINE L1 -5 6158 5499 2003 116 0 39 chr11 57032387 57032697 -93750856 - AluY SINE Alu -13 298 1 5567 132 0 23 chr11 57032697 57033085 -93750468 - L1PA13 LINE L1 -664 5499 5104 2226 161 96 0 chr11 57033100 57033517 -93750036 + L1PB1 LINE L1 5695 6151 0 267 266 65 0 chr11 57033508 57033632 -93749921 + L1MEc LINE L1 2166 2297 -4099 * 1209 120 0 0 chr11 57033664 57033831 -93749722 + AluY SINE Alu 1 167 -144 917 77 0 46 chr11 57033886 57034016 -93749537 + AluSg/x SINE Alu 178 301 -11 6871 255 65 18 chr11 57034024 57036636 -93746917 + L1MEc LINE L1 2352 5085 -1130 379 331 68 0 chr11 57037245 57037393 -93746160 + MIR SINE MIR 105 262 0 226 333 139 8 chr11 57038682 57038811 -93744742 - MIR3 SINE MIR -30 178 33 246 392 0 0 chr11 57039195 57039292 -93744261 + MIR SINE MIR 16 112 -150 22 56 0 0 chr11 57040308 57040344 -93743209 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 57040526 57040547 -93743006 + AT_rich Low_complexity Low_complexity 1 21 0 1046 281 63 35 chr11 57042253 57042464 -93741089 - L1ME3A LINE L1 -1 6169 5965 2055 108 0 0 chr11 57042464 57042787 -93740766 + AluSg SINE Alu 1 323 0 1046 281 63 35 chr11 57042787 57043063 -93740490 - L1ME3A LINE L1 -205 5965 5665 294 290 79 30 chr11 57043863 57044266 -93739287 + L1MEd LINE L1 792 1214 -4905 26 30 0 0 chr11 57044320 57044353 -93739200 + AT_rich Low_complexity Low_complexity 1 33 0 1923 134 7 0 chr11 57044362 57044638 -93738915 + AluSp SINE Alu 5 282 -31 207 0 0 0 chr11 57044641 57044664 -93738889 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2130 109 3 0 chr11 57045201 57045486 -93738067 - AluSg SINE Alu -24 286 1 21 0 0 0 chr11 57045826 57045847 -93737706 + AT_rich Low_complexity Low_complexity 1 21 0 1108 254 18 0 chr11 57046106 57046433 -93737120 + L1MC1 LINE L1 4977 5309 -837 432 110 0 27 chr11 57046424 57046497 -93737056 + L1PA13 LINE L1 5721 5791 -377 * 261 208 0 0 chr11 57046497 57046569 -93736984 + (TA)n Simple_repeat Simple_repeat 1 72 0 1887 134 62 19 chr11 57046571 57046892 -93736661 + L1PA13 LINE L1 5782 6116 -47 4607 184 29 43 chr11 57046902 57047955 -93735598 + L1MC1 LINE L1 5290 6328 -5 859 254 95 2 chr11 57048178 57048524 -93735029 + L1ME2 LINE L1 5798 6334 0 2922 91 0 0 chr11 57048567 57048962 -93734591 - L1PA13 LINE L1 -231 5932 5538 1366 186 18 59 chr11 57048964 57049303 -93734250 + L1MB8 LINE L1 5849 6173 -5 21 0 0 0 chr11 57049488 57049509 -93734044 + AT_rich Low_complexity Low_complexity 1 21 0 1597 230 94 36 chr11 57049622 57050092 -93733461 + MLT1D LTR MaLR 9 505 0 28 0 0 0 chr11 57050754 57050782 -93732771 + AT_rich Low_complexity Low_complexity 1 28 0 225 273 91 0 chr11 57054480 57054568 -93728985 + MIR SINE MIR 103 198 -64 21 0 0 0 chr11 57054813 57054834 -93728719 + AT_rich Low_complexity Low_complexity 1 21 0 354 383 143 42 chr11 57054999 57055566 -93727987 - HAL1 LINE L1 -1883 624 1 997 346 56 31 chr11 57056763 57057474 -93726079 - HERVL LTR ERVL -882 4772 4044 381 329 71 30 chr11 57057529 57057981 -93725572 - HERVL LTR ERVL -1331 3851 3422 23 0 0 0 chr11 57058810 57058833 -93724720 + AT_rich Low_complexity Low_complexity 1 23 0 393 304 112 6 chr11 57058835 57058996 -93724557 - MIR SINE MIR -7 255 78 296 227 213 27 chr11 57059696 57059846 -93723707 + MLT1K LTR MaLR 240 417 -171 2664 208 75 11 chr11 57060438 57061224 -93722329 + MER73 LTR ERVL 1 640 -4 21 82 0 0 chr11 57062349 57062398 -93721155 + AT_rich Low_complexity Low_complexity 1 49 0 268 339 23 6 chr11 57062736 57062910 -93720643 + CT-rich Low_complexity Low_complexity 2 178 0 195 167 0 0 chr11 57063127 57063169 -93720384 + (ATGGTG)n Simple_repeat Simple_repeat 2 43 0 285 182 0 0 chr11 57063446 57063501 -93720052 + (TG)n Simple_repeat Simple_repeat 2 56 0 263 340 22 12 chr11 57063526 57063629 -93719924 + MIR SINE MIR 14 117 -104 259 316 47 2 chr11 57063834 57063971 -93719582 + L1ME LINE L1 5511 5661 -460 318 260 7 14 chr11 57063989 57064135 -93719418 + (CATATA)n Simple_repeat Simple_repeat 2 146 0 204 315 60 47 chr11 57064420 57064569 -93718984 + L2 LINE L2 2888 3038 -234 248 327 50 10 chr11 57065487 57065588 -93717965 + MIR SINE MIR 88 192 -70 255 296 42 63 chr11 57066146 57066288 -93717265 - MIR3 SINE MIR -46 162 24 517 314 29 25 chr11 57066680 57066884 -93716669 + MIR SINE MIR 57 261 -1 197 349 57 0 chr11 57067124 57067230 -93716323 + MIR SINE MIR 132 243 -19 323 387 7 0 chr11 57067262 57067399 -93716154 + MIR SINE MIR 18 155 -107 1568 169 36 0 chr11 57068808 57069086 -93714467 - AluJb SINE Alu -23 289 2 23 33 0 0 chr11 57069210 57069240 -93714313 + AT_rich Low_complexity Low_complexity 1 30 0 818 249 110 25 chr11 57069512 57069829 -93713724 - MER2 DNA MER2_type 0 344 1 455 330 94 11 chr11 57069996 57070272 -93713281 + L1MEc LINE L1 80 378 -6018 605 287 105 5 chr11 57070950 57071159 -93712394 - MIR SINE MIR 0 262 33 342 377 134 21 chr11 57071250 57071489 -93712064 - L2 LINE L2 -2805 509 244 215 267 256 0 chr11 57071670 57071756 -93711797 + L2 LINE L2 3187 3294 -19 580 251 137 0 chr11 57071811 57071986 -93711567 + MLT1J LTR MaLR 1 199 -312 2325 112 8 3 chr11 57072456 57072814 -93710739 - L1PA13 LINE L1 0 6163 5804 2185 97 7 0 chr11 57072816 57073116 -93710437 + L1P4 LINE L1 5414 5715 -453 23 0 0 0 chr11 57074683 57074706 -93708847 + AT_rich Low_complexity Low_complexity 1 23 0 390 353 35 13 chr11 57074715 57075032 -93708521 + MER113 DNA MER1_type? 198 521 0 21 71 0 0 chr11 57075965 57076007 -93707546 + AT_rich Low_complexity Low_complexity 1 42 0 1096 155 40 0 chr11 57077257 57077483 -93706070 - L1MB3 LINE L1 -4 6179 5945 1301 150 0 17 chr11 57077483 57077714 -93705839 - L1MA4 LINE L1 -5 6295 6066 492 242 0 50 chr11 57077853 57078035 -93705518 - L1M4 LINE L1 -2169 3977 3805 343 297 19 7 chr11 57078049 57078204 -93705349 + L1M4 LINE L1 3651 3807 -2339 22 35 0 0 chr11 57078482 57078511 -93705042 + AT_rich Low_complexity Low_complexity 1 29 0 1231 92 0 12 chr11 57078694 57078867 -93704686 + AluSg/x SINE Alu 137 307 -5 235 303 55 28 chr11 57078966 57079075 -93704478 + HAL1b LINE L1 379 490 -858 22 35 0 0 chr11 57079543 57079572 -93703981 + AT_rich Low_complexity Low_complexity 1 29 0 1068 142 89 0 chr11 57082042 57082232 -93701321 + L1PA16 LINE L1 5947 6153 -13 32 26 0 0 chr11 57082485 57082524 -93701029 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr11 57084207 57084228 -93699325 + AT_rich Low_complexity Low_complexity 1 21 0 200 321 24 24 chr11 57084581 57084665 -93698888 + MIR3 SINE MIR 123 206 -2 345 281 48 100 chr11 57084788 57084940 -93698613 - MIR3 SINE MIR -49 159 40 348 24 0 0 chr11 57085373 57085414 -93698139 + (TA)n Simple_repeat Simple_repeat 1 41 0 23 0 0 0 chr11 57087039 57087062 -93696491 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr11 57087192 57087220 -93696333 + AT_rich Low_complexity Low_complexity 1 28 0 226 269 13 13 chr11 57087263 57087341 -93696212 - LTR50 LTR ERVL -717 78 1 2739 179 33 47 chr11 57087385 57087999 -93695554 - MER6A DNA MER2_type 0 605 1 41638 41 21 1 chr11 57088249 57094276 -93689277 + L1PA2 LINE L1 1 6150 -5 1266 314 88 50 chr11 57094475 57095329 -93688224 - ERVL LTR ERVL -280 5484 4599 1511 180 17 89 chr11 57095331 57095737 -93687816 - MLT1B LTR MaLR 0 390 14 27 0 0 0 chr11 57096364 57096391 -93687162 + AT_rich Low_complexity Low_complexity 1 27 0 520 135 45 0 chr11 57096666 57096755 -93686798 - AluS SINE Alu -220 93 1 935 263 117 53 chr11 57096801 57097139 -93686414 + L1ME3A LINE L1 5476 5870 -300 2186 101 0 0 chr11 57097139 57097435 -93686118 + AluY SINE Alu 1 296 -15 935 263 117 53 chr11 57097435 57097685 -93685868 + L1ME3A LINE L1 5870 6102 -68 339 336 29 0 chr11 57098139 57098276 -93685277 + MER46C DNA MER2_type 149 289 -49 447 325 142 12 chr11 57098621 57099227 -93684326 + L1ME3 LINE L1 3554 4238 -1908 5587 37 0 0 chr11 57099375 57100216 -93683337 - L1PA4 LINE L1 -232 5923 5083 1861 234 45 32 chr11 57100325 57100855 -93682698 - LTR55 LTR ERV -11 537 1 499 333 67 28 chr11 57100945 57101410 -93682143 + L1ME3 LINE L1 5417 5899 -263 220 241 9 27 chr11 57101457 57101569 -93681984 + (TA)n Simple_repeat Simple_repeat 1 110 0 31 58 0 0 chr11 57101716 57101768 -93681785 + AT_rich Low_complexity Low_complexity 1 52 0 3150 44 0 0 chr11 57101879 57102269 -93681284 - L1PA3 LINE L1 -945 5201 4812 7482 32 5 0 chr11 57102269 57103206 -93680347 + L1PA3 LINE L1 5214 6154 -1 4757 253 139 28 chr11 57103787 57105496 -93678057 + L1M3e LINE L1 1 1519 -5587 273 89 0 0 chr11 57105496 57105541 -93678012 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 4757 253 139 28 chr11 57105541 57106229 -93677324 + L1M3e LINE L1 1519 2129 -4977 531 43 0 0 chr11 57106229 57106299 -93677254 + (CA)n Simple_repeat Simple_repeat 2 71 0 4757 253 139 28 chr11 57106299 57107036 -93676517 + L1M3e LINE L1 2129 3173 -3933 285 162 0 0 chr11 57107078 57107143 -93676410 + L1M3e LINE L1 3162 3226 -3880 210 224 0 35 chr11 57107260 57107318 -93676235 + T-rich Low_complexity Low_complexity 4 59 0 24 100 0 0 chr11 57107468 57107548 -93676005 + AT_rich Low_complexity Low_complexity 1 80 0 497 244 73 8 chr11 57107800 57107923 -93675630 - MER2 DNA MER2_type 0 345 215 4839 29 0 12 chr11 57107923 57108508 -93675045 - L1PA4 LINE L1 0 6155 5578 766 11 0 0 chr11 57108510 57108599 -93674954 + L1PA4 LINE L1 5496 5584 -571 1192 181 56 0 chr11 57108601 57108817 -93674736 - MER2 DNA MER2_type -116 229 2 207 306 0 0 chr11 57108818 57108890 -93674663 + (CATATA)n Simple_repeat Simple_repeat 5 76 0 422 130 78 0 chr11 57109933 57110010 -93673543 + L1PA3 LINE L1 6070 6152 -3 701 198 36 0 chr11 57110221 57110388 -93673165 - L1MB4 LINE L1 -166 6014 5842 911 204 10 97 chr11 57110433 57110742 -93672811 - L1MB4 LINE L1 -462 5721 5440 345 161 42 93 chr11 57110779 57110897 -93672656 - L1MB1 LINE L1 -3 6165 6054 734 202 43 29 chr11 57110923 57111227 -93672326 - L1MB4 LINE L1 -729 5451 5141 228 272 0 22 chr11 57111245 57111337 -93672216 - L1MC4 LINE L1 -1339 6703 6614 278 148 19 0 chr11 57111337 57111391 -93672162 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 299 261 0 0 chr11 57111397 57111466 -93672087 - L1MB4 LINE L1 -1034 5112 5044 2604 122 24 19 chr11 57111475 57111892 -93671661 + MSTA LTR MaLR 7 425 -3 4370 230 31 33 chr11 57111897 57112721 -93670832 - L1MB4 LINE L1 -1103 5043 4222 2201 116 10 3 chr11 57112721 57113032 -93670521 + AluSq SINE Alu 1 313 0 4370 230 31 33 chr11 57113032 57113545 -93670008 - L1MB4 LINE L1 -1924 4222 3709 248 247 91 73 chr11 57113678 57113897 -93669656 + L1ME4a LINE L1 5857 6079 -42 309 68 0 0 chr11 57115285 57115329 -93668224 + (TA)n Simple_repeat Simple_repeat 1 44 0 201 222 22 0 chr11 57115841 57115886 -93667667 - L2 LINE L2 0 3313 3268 403 289 107 0 chr11 57115990 57116149 -93667404 - L2 LINE L2 -2456 858 683 283 351 19 7 chr11 57118955 57119109 -93664444 - MLT1H LTR MaLR -388 161 6 1233 263 35 21 chr11 57119792 57120340 -93663213 - L1ME LINE L1 -464 5702 5153 329 256 85 78 chr11 57120347 57120605 -93662948 + L1MC/D LINE L1 4646 4905 -1241 229 276 29 9 chr11 57120713 57120818 -93662735 + L1MC/D LINE L1 5128 5234 -912 31 44 0 0 chr11 57120858 57120903 -93662650 + AT_rich Low_complexity Low_complexity 1 45 0 230 247 14 0 chr11 57120926 57120999 -93662554 + L1MC/D LINE L1 5357 5430 -2565 826 249 86 17 chr11 57121254 57121659 -93661894 - Charlie4a DNA MER1_type -16 492 60 2999 207 15 28 chr11 57121704 57121882 -93661671 - L1MB1 LINE L1 -85 6083 5904 1912 207 204 91 chr11 57121882 57122796 -93660757 - LTR28 LTR ERV1 -3 1017 1 2999 207 15 28 chr11 57122796 57123757 -93659796 - L1MB1 LINE L1 -264 5904 4969 2848 13 0 0 chr11 57123757 57124068 -93659485 - AluY SINE Alu 0 311 1 2999 207 15 28 chr11 57124068 57124522 -93659031 - L1MB1 LINE L1 -1199 4969 4511 1834 234 33 19 chr11 57124523 57125137 -93658416 + L1 LINE L1 3100 3721 -2425 254 308 50 17 chr11 57125340 57125460 -93658093 + MLT1J2 LTR MaLR 263 386 -64 466 212 137 0 chr11 57130065 57130211 -93653342 - L1MD1 LINE L1 -7 6235 6070 248 333 71 8 chr11 57130508 57130634 -93652919 - MLT1H LTR MaLR -387 162 29 1430 236 12 108 chr11 57132421 57132988 -93650565 - MLT2B1 LTR ERVL 0 520 8 2130 134 0 0 chr11 57133119 57133425 -93650128 + AluSc SINE Alu 1 306 -3 258 247 47 59 chr11 57133750 57133835 -93649718 + LTR50 LTR ERVL 590 673 -122 358 353 40 22 chr11 57134291 57134563 -93648990 + ERVL LTR ERVL 2808 3084 -2680 1177 276 66 42 chr11 57134644 57135173 -93648380 + MLT1F LTR MaLR 1 542 0 1587 163 158 13 chr11 57135175 57135549 -93648004 - MSTA LTR MaLR 0 428 1 450 328 49 16 chr11 57135694 57136002 -93647551 + MLT1F-int LTR MaLR 294 611 -760 219 114 0 0 chr11 57136380 57136415 -93647138 + (CA)n Simple_repeat Simple_repeat 2 36 0 1727 252 56 21 chr11 57137110 57137282 -93646271 - MER74A LTR ERVL -24 534 369 2133 107 3 3 chr11 57137282 57137572 -93645981 - AluSx SINE Alu -20 292 3 1727 252 56 21 chr11 57137572 57137914 -93645639 - MER74A LTR ERVL -189 369 2 454 278 121 6 chr11 57137914 57138280 -93645273 + MLT1F1 LTR MaLR 58 510 -57 2262 104 3 7 chr11 57138467 57138776 -93644777 + AluY SINE Alu 1 308 -3 30 77 0 0 chr11 57138939 57139004 -93644549 + AT_rich Low_complexity Low_complexity 1 65 0 249 83 0 0 chr11 57139840 57139876 -93643677 + (CA)n Simple_repeat Simple_repeat 1 36 0 434 310 52 52 chr11 57140096 57140444 -93643109 - L1 LINE L1 -1207 4939 4592 239 256 85 23 chr11 57140619 57140748 -93642805 - L1 LINE L1 -1728 4418 4282 403 69 0 0 chr11 57141404 57141462 -93642091 - L1PA7 LINE L1 -6 6148 6091 3330 109 18 6 chr11 57141462 57141975 -93641578 + L1P LINE L1 4845 5363 -783 3407 156 10 45 chr11 57142653 57143137 -93640416 - L1MA4 LINE L1 -1 6299 5848 1832 209 78 10 chr11 57143137 57143534 -93640019 - MSTB LTR MaLR 0 426 3 3407 156 10 45 chr11 57143534 57143779 -93639774 - L1MA4 LINE L1 -452 5848 5596 200 366 41 4 chr11 57146333 57146465 -93637088 - MIR SINE MIR -65 143 21 183 235 153 24 chr11 57147165 57147250 -93636303 + L3 LINE CR1 798 893 -684 212 0 36 0 chr11 57147547 57147575 -93635978 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 308 230 110 20 chr11 57147582 57147682 -93635871 + L3 LINE CR1 1204 1312 -265 197 338 69 31 chr11 57147959 57148119 -93635434 - L2 LINE L2 -553 2761 2596 475 271 58 7 chr11 57148141 57148296 -93635257 + MIR SINE MIR 95 257 -5 3044 187 30 2 chr11 57149106 57149709 -93633844 + Tigger3b DNA MER2_type 1 620 -611 41985 54 9 2 chr11 57149712 57155790 -93627763 + L1PA4 LINE L1 12 6137 -18 2084 150 201 14 chr11 57155790 57156302 -93627251 + Tigger3b DNA MER2_type 576 1183 -49 336 270 95 24 chr11 57156588 57156840 -93626713 + Charlie2a DNA MER1_type 1593 1862 -1000 28 79 0 0 chr11 57156943 57157006 -93626547 + AT_rich Low_complexity Low_complexity 1 63 0 1927 96 4 4 chr11 57157037 57157317 -93626236 - AluYb8 SINE Alu 0 318 39 22 0 0 0 chr11 57157325 57157347 -93626206 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr11 57157445 57157475 -93626078 + AT_rich Low_complexity Low_complexity 1 30 0 536 139 0 0 chr11 57157726 57157805 -93625748 - AluSg/x SINE Alu -96 216 138 386 195 97 72 chr11 57158943 57159138 -93624415 + LTR49-int LTR ERV1 157 356 -5975 441 204 25 27 chr11 57159154 57159352 -93624201 + LTR49-int LTR ERV1 471 701 -5630 418 216 57 67 chr11 57159592 57159609 -93623944 + LTR49-int LTR ERV1 956 972 -5359 357 43 0 0 chr11 57159616 57159663 -93623890 + (TA)n Simple_repeat Simple_repeat 2 48 0 * 396 0 0 0 chr11 57159662 57159706 -93623847 + (GA)n Simple_repeat Simple_repeat 2 45 0 2004 128 0 10 chr11 57159663 57159987 -93623566 - AluSx SINE Alu -32 280 1 418 216 57 67 chr11 57159987 57160163 -93623390 + LTR49-int LTR ERV1 972 1147 -5184 900 121 7 0 chr11 57160294 57160435 -93623118 - L1PA15 LINE L1 -1 6164 6023 328 259 38 46 chr11 57160477 57160608 -93622945 - L1MC5 LINE L1 -280 7681 7552 524 280 29 97 chr11 57161138 57161552 -93622001 - L1MC5 LINE L1 -871 7090 6705 266 262 65 47 chr11 57161576 57161683 -93621870 - L1MC4 LINE L1 -1204 6838 6730 203 125 25 0 chr11 57162255 57162295 -93621258 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 323 190 60 0 chr11 57162517 57162617 -93620936 + (TA)n Simple_repeat Simple_repeat 2 107 0 388 320 103 41 chr11 57164567 57164858 -93618695 + L1ME4a LINE L1 5549 5857 -264 24 67 0 0 chr11 57164903 57164948 -93618605 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr11 57164991 57165013 -93618540 + AT_rich Low_complexity Low_complexity 1 22 0 626 208 66 111 chr11 57165492 57165718 -93617835 + MER20 DNA MER1_type 1 216 -3 228 35 0 0 chr11 57166388 57166417 -93617136 + (TG)n Simple_repeat Simple_repeat 2 30 0 460 281 57 21 chr11 57166821 57167013 -93616540 - MIR SINE MIR 0 262 66 343 304 77 59 chr11 57167274 57167613 -93615940 + Charlie2b DNA MER1_type 110 454 -2408 1464 221 3 3 chr11 57167619 57167917 -93615636 + AluJo SINE Alu 1 298 -14 2029 129 51 28 chr11 57167961 57168317 -93615236 + THE1B LTR MaLR 1 364 0 11148 114 3 1 chr11 57168317 57169894 -93613659 + THE1B-int LTR MaLR 1 1580 0 2073 136 48 17 chr11 57169895 57170247 -93613306 + THE1B LTR MaLR 2 364 0 292 306 27 27 chr11 57170340 57170451 -93613102 + Charlie2b DNA MER1_type 545 655 -2127 336 270 95 24 chr11 57170557 57170809 -93612744 + Charlie2a DNA MER1_type 1593 1862 -1000 31 76 0 0 chr11 57170912 57170978 -93612575 + AT_rich Low_complexity Low_complexity 1 66 0 2588 17 3 0 chr11 57171006 57171298 -93612255 - AluYb8 SINE Alu 0 318 26 185 0 0 39 chr11 57172237 57172263 -93611290 + (GGAAA)n Simple_repeat Simple_repeat 1 25 0 22 56 0 0 chr11 57172551 57172587 -93610966 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr11 57173355 57173379 -93610174 + AT_rich Low_complexity Low_complexity 1 24 0 458 320 59 29 chr11 57173716 57173877 -93609676 + L2 LINE L2 2999 3154 -159 951 189 95 0 chr11 57173877 57174067 -93609486 - MER6B DNA MER2_type -1 209 2 458 320 59 29 chr11 57174067 57174211 -93609342 + L2 LINE L2 3154 3313 0 333 0 0 0 chr11 57174284 57174321 -93609232 + (CA)n Simple_repeat Simple_repeat 1 37 0 587 256 39 108 chr11 57174381 57174768 -93608785 + MER34 LTR ERV1 5 364 -178 606 149 0 9 chr11 57174855 57174962 -93608591 - L1PA13 LINE L1 -14 6149 6044 289 29 0 0 chr11 57174968 57175002 -93608551 - L1PA12 LINE L1 -91 6077 6044 4399 124 15 0 chr11 57175008 57175686 -93607867 - L1PA13 LINE L1 -86 6077 5390 349 226 38 35 chr11 57176147 57176345 -93607208 + LTR49-int LTR ERV1 471 701 -5630 1019 230 47 23 chr11 57176449 57176749 -93606804 + LTR49-int LTR ERV1 842 1148 -5183 848 148 7 0 chr11 57176997 57177139 -93606414 - L1PA15 LINE L1 -7 6158 6016 229 248 51 51 chr11 57177181 57177298 -93606255 - L1MC5 LINE L1 -292 7669 7553 261 0 0 0 chr11 57177355 57177384 -93606169 + (TG)n Simple_repeat Simple_repeat 2 30 0 2169 107 7 0 chr11 57177573 57177872 -93605681 + AluSc SINE Alu 1 301 -8 622 279 18 97 chr11 57178151 57178595 -93604958 - L1MC5 LINE L1 -848 7113 6705 249 211 0 0 chr11 57180095 57180152 -93603401 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 733 313 27 8 chr11 57181303 57181562 -93601991 + ERVL LTR ERVL 3531 3794 -1970 416 282 35 7 chr11 57181586 57181728 -93601825 + ERVL LTR ERVL 4621 4766 -998 443 287 100 66 chr11 57181845 57182225 -93601328 + MLT1H LTR MaLR 130 522 -27 340 226 116 26 chr11 57182433 57182588 -93600965 + L1MCa LINE L1 1995 2163 -4263 349 275 223 5 chr11 57183125 57183336 -93600217 - L1M4 LINE L1 -838 5308 5052 486 348 85 0 chr11 57184231 57184501 -93599052 - L2 LINE L2 -8 3305 3013 24 0 0 0 chr11 57184909 57184933 -93598620 + AT_rich Low_complexity Low_complexity 1 24 0 255 61 0 0 chr11 57185485 57185518 -93598035 + (TA)n Simple_repeat Simple_repeat 1 33 0 300 310 276 0 chr11 57185533 57185678 -93597875 + MER5A DNA MER1_type 4 188 -1 839 248 181 37 chr11 57186897 57187305 -93596248 - MLT1C LTR MaLR 0 467 1 281 342 54 27 chr11 57188513 57188697 -93594856 - MIR SINE MIR -21 241 53 2275 197 32 63 chr11 57188731 57189299 -93594254 - MER44D DNA MER2_type 0 605 1 1827 112 0 0 chr11 57189394 57189643 -93593910 - AluSx SINE Alu -15 297 49 26 0 0 0 chr11 57190051 57190077 -93593476 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr11 57190090 57190111 -93593442 + AT_rich Low_complexity Low_complexity 1 21 0 449 321 57 45 chr11 57190678 57190924 -93592629 + MIR SINE MIR 8 256 -6 10120 264 38 11 chr11 57193049 57196610 -93586943 - L1PA15-16 LINE L1 -1095 5754 1934 966 191 40 18 chr11 57196679 57196956 -93586597 + L1MCa LINE L1 3096 3378 -3048 1043 119 20 20 chr11 57197217 57197418 -93586135 - L1MA7 LINE L1 -3 6288 6088 299 106 0 0 chr11 57197418 57197465 -93586088 + MADE1 DNA Mariner 34 80 0 755 231 83 13 chr11 57197520 57197749 -93585804 - L1MA9 LINE L1 -166 6146 5902 644 136 8 25 chr11 57197751 57197869 -93585684 + L1M2 LINE L1 5520 5635 -665 2123 109 7 0 chr11 57198275 57198568 -93584985 - AluSx SINE Alu -11 301 7 2792 111 56 5 chr11 57198599 57198640 -93584913 - MLT2A2 LTR ERVL 0 453 416 333 0 0 0 chr11 57198640 57198677 -93584876 + (TG)n Simple_repeat Simple_repeat 2 38 0 2792 111 56 5 chr11 57198677 57199066 -93584487 - MLT2A2 LTR ERVL -37 416 1 705 256 35 13 chr11 57199451 57199681 -93583872 - L1ME LINE L1 -499 5667 5433 549 55 0 0 chr11 57199682 57199755 -93583798 + (TG)n Simple_repeat Simple_repeat 2 74 0 529 164 125 0 chr11 57199755 57199859 -93583694 - FRAM SINE Alu -29 147 31 1028 273 52 31 chr11 57199859 57200464 -93583089 - L1ME LINE L1 -730 5434 4817 670 232 39 6 chr11 57202091 57202272 -93581281 + MER5A DNA MER1_type 1 187 -2 25 51 0 0 chr11 57202704 57202743 -93580810 + AT_rich Low_complexity Low_complexity 1 39 0 228 196 39 0 chr11 57202786 57202837 -93580716 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 1358 145 60 4 chr11 57203137 57203372 -93580181 - AluJo SINE Alu -3 309 62 655 278 20 32 chr11 57204669 57204921 -93578632 + L1MC3 LINE L1 7208 7456 -329 3127 92 2 2 chr11 57204921 57205368 -93578185 - L1PA7 LINE L1 -1305 4841 4395 6576 82 7 1 chr11 57205369 57206646 -93576907 + L1PA7 LINE L1 4847 6129 -25 283 169 182 0 chr11 57206633 57206710 -93576843 + L1MD3 LINE L1 7755 7845 -150 * 3524 194 32 69 chr11 57206721 57207777 -93575776 - L1MB1 LINE L1 -4 6164 5144 317 278 0 26 chr11 57207765 57207880 -93575673 + L1MC4a LINE L1 7684 7795 -13 * 252 245 29 10 chr11 57209153 57209255 -93574298 + (TA)n Simple_repeat Simple_repeat 2 105 0 404 315 109 4 chr11 57209714 57209981 -93573572 - L1ME LINE L1 -301 5820 5526 447 309 86 20 chr11 57210605 57210909 -93572644 - L1ME3A LINE L1 -8 6162 5839 352 294 95 37 chr11 57211013 57211527 -93572026 + L1M4 LINE L1 3999 4542 -1604 859 108 0 0 chr11 57211629 57211749 -93571804 - L1PA4 LINE L1 -4753 1393 1274 * 31628 46 1 1 chr11 57211744 57216496 -93567057 + L1PA4 LINE L1 1403 6154 -1 3812 178 15 5 chr11 57216603 57217912 -93565641 + L1P5 LINE L1 4472 5789 -365 260 125 0 0 chr11 57217926 57217966 -93565587 + MER4B-int LTR ERV1 1152 1191 -5567 246 182 68 34 chr11 57217967 57218055 -93565498 - L1MC4 LINE L1 -1339 6703 6613 278 154 0 15 chr11 57218059 57218124 -93565429 + (TG)n Simple_repeat Simple_repeat 2 65 0 451 99 50 0 chr11 57218285 57218386 -93565167 + (TA)n Simple_repeat Simple_repeat 1 106 0 185 297 16 0 chr11 57218408 57218472 -93565081 - MIR SINE MIR -61 147 83 802 273 61 35 chr11 57218478 57218873 -93564680 + MLT1C LTR MaLR 6 410 -57 220 259 0 17 chr11 57220426 57220484 -93563069 + GA-rich Low_complexity Low_complexity 2 58 0 328 104 0 0 chr11 57221104 57221152 -93562401 + MADE1 DNA Mariner 33 80 0 462 256 0 0 chr11 57221330 57221416 -93562137 - Tigger3(Golem) DNA MER2_type -1 3028 2943 2223 49 0 52 chr11 57221531 57221837 -93561716 - AluY SINE Alu -21 290 1 26 30 0 0 chr11 57222954 57222987 -93560566 + AT_rich Low_complexity Low_complexity 1 33 0 181 364 119 0 chr11 57224354 57224472 -93559081 + MIR SINE MIR 57 188 -74 246 32 0 0 chr11 57224936 57224967 -93558586 + (TG)n Simple_repeat Simple_repeat 2 32 0 290 188 158 104 chr11 57226005 57226207 -93557346 + MLT1H LTR MaLR 332 544 -11 * 640 248 90 4 chr11 57226185 57226463 -93557090 - Charlie2a DNA MER1_type -968 1894 1593 272 215 0 0 chr11 57226822 57226887 -93556666 + L1MC4 LINE L1 6639 6703 -1339 342 0 0 0 chr11 57226893 57226931 -93556622 + (GA)n Simple_repeat Simple_repeat 2 39 0 1051 250 11 15 chr11 57226933 57227205 -93556348 - AluJb SINE Alu -39 273 3 270 257 123 101 chr11 57227271 57227547 -93556006 - Charlie2 DNA MER1_type -2391 391 110 493 273 106 22 chr11 57227766 57227993 -93555560 + MIR SINE MIR 15 260 -2 405 0 0 0 chr11 57228419 57228464 -93555089 + (CA)n Simple_repeat Simple_repeat 2 46 0 665 186 66 111 chr11 57229131 57229357 -93554196 - MER20 DNA MER1_type -3 216 1 24 53 0 0 chr11 57229906 57229944 -93553609 + AT_rich Low_complexity Low_complexity 1 38 0 22 70 0 0 chr11 57230063 57230106 -93553447 + AT_rich Low_complexity Low_complexity 1 43 0 194 280 54 32 chr11 57232359 57232452 -93551101 + MIR SINE MIR 140 234 -28 330 26 0 0 chr11 57232481 57232520 -93551033 + (CA)n Simple_repeat Simple_repeat 2 40 0 233 301 54 0 chr11 57232961 57233054 -93550499 + MIR SINE MIR 91 188 -74 237 293 133 27 chr11 57233805 57233955 -93549598 - LTR50 LTR ERVL -605 190 25 249 256 58 23 chr11 57236352 57236438 -93547115 - HsTC2 DNA Tc2 -33 1865 1777 1041 193 9 9 chr11 57236488 57236716 -93546837 - L1 LINE L1 -1094 5052 4825 2421 122 30 5 chr11 57236716 57236747 -93546806 + L1PB1 LINE L1 5749 5778 -373 247 64 21 21 chr11 57236747 57236794 -93546759 + (TA)n Simple_repeat Simple_repeat 1 47 0 2421 122 30 5 chr11 57236794 57237154 -93546399 + L1PB1 LINE L1 5778 6151 0 194 354 49 0 chr11 57237609 57237691 -93545862 - L2 LINE L2 -65 3207 3122 3326 93 2 0 chr11 57237877 57238308 -93545245 + LTR3 LTR ERVK 1 432 0 859 191 11 37 chr11 57240504 57240692 -93542861 + MER20 DNA MER1_type 36 218 -1 514 224 98 11 chr11 57241025 57241199 -93542354 + MER53 DNA DNA 1 189 0 269 268 115 64 chr11 57241639 57241796 -93541757 + MIR3 SINE MIR 4 168 -40 1868 144 3 10 chr11 57243622 57243927 -93539626 - AluSx SINE Alu -9 303 1 597 147 0 60 chr11 57244516 57244666 -93538887 - FRAM SINE Alu 0 179 37 305 127 0 55 chr11 57244678 57244733 -93538820 - Alu SINE Alu -250 52 1 180 0 0 0 chr11 57245983 57246003 -93537550 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 7241 40 0 2 chr11 57246015 57247373 -93536180 - L1PA4 LINE L1 0 6155 4795 490 251 137 36 chr11 57247468 57247854 -93535699 - Charlie2 DNA MER1_type -282 2580 2156 835 169 0 0 chr11 57247856 57248004 -93535549 - L1PA16 LINE L1 -2 6164 6017 5137 218 55 8 chr11 57248004 57249844 -93533709 - L1PA16 LINE L1 -353 5813 3890 2121 118 0 3 chr11 57249895 57250192 -93533361 - AluSg SINE Alu -14 296 1 335 210 114 30 chr11 57250220 57250387 -93533166 - Charlie2 DNA MER1_type -838 2024 1844 464 207 117 9 chr11 57250474 57250585 -93532968 + L1MCc LINE L1 1071 1193 -5230 627 283 92 16 chr11 57250594 57251187 -93532366 + L1MCc LINE L1 1264 1902 -4887 257 0 0 29 chr11 57251193 57251227 -93532326 + (CA)n Simple_repeat Simple_repeat 1 33 0 548 259 47 6 chr11 57251289 57251459 -93532094 - MER20 DNA MER1_type -2 217 41 663 262 38 25 chr11 57251616 57251853 -93531700 + L1MCc LINE L1 2280 2519 -4603 313 285 50 75 chr11 57252080 57252492 -93531061 + L1MCc LINE L1 2812 3172 -3769 712 295 121 30 chr11 57252612 57252951 -93530602 + MLT1K LTR MaLR 201 570 -18 21 36 0 0 chr11 57252969 57252997 -93530556 + AT_rich Low_complexity Low_complexity 1 28 0 252 281 0 0 chr11 57253056 57253195 -93530358 + (TA)n Simple_repeat Simple_repeat 1 139 0 197 338 0 26 chr11 57253403 57253480 -93530073 + L2 LINE L2 3234 3308 -5 224 333 72 9 chr11 57254191 57254302 -93529251 - MIR3 SINE MIR -9 199 82 27 0 0 0 chr11 57254439 57254466 -93529087 + AT_rich Low_complexity Low_complexity 1 27 0 25 31 0 0 chr11 57254483 57254515 -93529038 + AT_rich Low_complexity Low_complexity 1 32 0 207 108 27 0 chr11 57255037 57255074 -93528479 + T-rich Low_complexity Low_complexity 1 38 0 336 185 0 0 chr11 57255095 57255160 -93528393 - Alu SINE Alu 0 300 236 25 0 0 0 chr11 57255508 57255533 -93528020 + AT_rich Low_complexity Low_complexity 1 25 0 805 247 18 95 chr11 57255564 57255847 -93527706 - MIR SINE MIR 0 262 2 225 167 21 0 chr11 57257404 57257452 -93526101 + LTR37B LTR ERV1 381 429 -39 23 78 0 0 chr11 57257455 57257506 -93526047 + AT_rich Low_complexity Low_complexity 1 51 0 181 321 125 58 chr11 57257537 57257777 -93525776 + L2 LINE L2 1302 1557 -1757 358 234 113 35 chr11 57258078 57258219 -93525334 - LTR37A LTR ERV1 -222 204 53 234 0 0 0 chr11 57258381 57258407 -93525146 + (CA)n Simple_repeat Simple_repeat 1 26 0 332 244 156 0 chr11 57258517 57258607 -93524946 - MIR SINE MIR -95 167 64 231 261 0 0 chr11 57258832 57258878 -93524675 - MER89 LTR ERV1 -37 522 477 23 0 0 0 chr11 57259021 57259044 -93524509 + AT_rich Low_complexity Low_complexity 1 23 0 1722 204 9 9 chr11 57260463 57260806 -93522747 + MER61A LTR ERV1 1 343 0 1781 180 77 66 chr11 57260806 57261367 -93522186 + MER61A-int LTR ERV1 1 567 -4650 11144 116 19 25 chr11 57261371 57263762 -93519791 + MER61-int LTR ERV1 2085 6431 -987 751 283 146 58 chr11 57263762 57264309 -93519244 + L1MCc LINE L1 832 1426 -4997 249 282 78 35 chr11 57264465 57264607 -93518946 - L1MEd LINE L1 -4788 1596 1449 314 258 70 104 chr11 57264737 57265024 -93518529 - L1MEd LINE L1 -4872 1500 1224 211 196 39 0 chr11 57265130 57265181 -93518372 + (TA)n Simple_repeat Simple_repeat 2 54 0 551 271 0 16 chr11 57265320 57265449 -93518104 + AluJo SINE Alu 124 250 -62 35 0 0 0 chr11 57265449 57265484 -93518069 + AT_rich Low_complexity Low_complexity 1 35 0 225 159 0 0 chr11 57265596 57265640 -93517913 + A-rich Low_complexity Low_complexity 1 44 0 405 207 0 0 chr11 57266960 57267047 -93516506 + T-rich Low_complexity Low_complexity 3 89 0 1359 175 80 0 chr11 57267053 57267304 -93516249 - AluSg SINE Alu -39 271 1 668 54 22 0 chr11 57269507 57269599 -93513954 + (TTTC)n Simple_repeat Simple_repeat 4 97 0 321 120 20 0 chr11 57269606 57269656 -93513897 + CT-rich Low_complexity Low_complexity 1 51 0 1559 165 7 29 chr11 57269656 57269935 -93513618 - AluSx SINE Alu -39 273 1 22 0 0 0 chr11 57271269 57271291 -93512262 + AT_rich Low_complexity Low_complexity 1 22 0 3768 169 34 30 chr11 57272993 57273998 -93509555 - MER52A LTR ERV1 -14 1741 674 827 275 107 25 chr11 57274695 57274925 -93508628 + L1ME3A LINE L1 5803 6069 -101 234 0 0 0 chr11 57274925 57274951 -93508602 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 827 275 107 25 chr11 57274951 57275047 -93508506 + L1ME3A LINE L1 6069 6156 -14 27 73 0 0 chr11 57275200 57275255 -93508298 + AT_rich Low_complexity Low_complexity 1 55 0 2256 62 31 7 chr11 57276983 57277272 -93506281 - AluY SINE Alu -15 296 1 192 97 0 0 chr11 57278496 57278527 -93505026 + (CA)n Simple_repeat Simple_repeat 2 32 0 1149 163 5 35 chr11 57280006 57280208 -93503345 - AluJb SINE Alu -116 196 1 621 201 45 22 chr11 57280490 57280624 -93502929 - AluJo SINE Alu -173 139 3 252 390 119 0 chr11 57280850 57280968 -93502585 + L2 LINE L2 3122 3253 -19 25 0 0 0 chr11 57280979 57281004 -93502549 + AT_rich Low_complexity Low_complexity 1 25 0 195 303 15 15 chr11 57282275 57282341 -93501212 - L2 LINE L2 -66 3247 3182 21 0 0 0 chr11 57282345 57282366 -93501187 + AT_rich Low_complexity Low_complexity 1 21 0 183 268 35 92 chr11 57283969 57284111 -93499442 - MIR SINE MIR -31 231 98 27 0 0 0 chr11 57285957 57285984 -93497569 + AT_rich Low_complexity Low_complexity 1 27 0 350 365 30 0 chr11 57285993 57286160 -93497393 - L1MC/D LINE L1 -2008 5800 5629 181 244 22 0 chr11 57286304 57286349 -93497204 - MIR SINE MIR -62 146 101 21 0 0 0 chr11 57287245 57287266 -93496287 + AT_rich Low_complexity Low_complexity 1 21 0 522 281 128 32 chr11 57288650 57289330 -93494223 - L1ME3A LINE L1 -14 6156 5403 1998 140 0 17 chr11 57289527 57289827 -93493726 + AluSx SINE Alu 18 312 0 323 378 14 42 chr11 57290558 57290775 -93492778 - L3 LINE CR1 -25 1552 1342 688 121 0 57 chr11 57291486 57291626 -93491927 + L1PA13 LINE L1 5931 6062 -101 574 116 4 2 chr11 57291646 57291747 -93491806 + L1PA13 LINE L1 6044 6144 -19 2069 132 0 0 chr11 57292563 57292859 -93490694 + AluSx SINE Alu 17 312 0 21 0 0 0 chr11 57293142 57293163 -93490390 + AT_rich Low_complexity Low_complexity 1 21 0 486 103 0 0 chr11 57295319 57295397 -93488156 + (TTTA)n Simple_repeat Simple_repeat 1 78 0 769 284 80 11 chr11 57297470 57297847 -93485706 + L1MA9 LINE L1 5872 6274 -38 1542 198 3 24 chr11 57298003 57298296 -93485257 + AluJo SINE Alu 1 287 -25 748 171 8 0 chr11 57298879 57299002 -93484551 + AluSq/x SINE Alu 24 147 -165 21 57 0 0 chr11 57299324 57299359 -93484194 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr11 57299451 57299479 -93484074 + AT_rich Low_complexity Low_complexity 1 28 0 531 273 7 0 chr11 57300181 57300324 -93483229 - MER5A DNA MER1_type -40 149 6 2210 79 10 0 chr11 57301773 57302064 -93481489 + AluSp SINE Alu 1 294 -19 215 31 31 0 chr11 57306866 57306898 -93476655 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 7427 37 0 0 chr11 57307518 57308493 -93475060 - L1PA4 LINE L1 -3 6152 5178 8482 29 1 0 chr11 57308493 57309560 -93473993 + L1PA4 LINE L1 4134 5201 -945 1692 185 28 6 chr11 57310594 57310919 -93472634 - MER61A LTR ERV1 -11 332 1 9558 114 25 9 chr11 57310919 57312418 -93471135 - MER61A-int LTR ERV1 0 5217 3696 2982 56 8 8 chr11 57312629 57313021 -93470532 + L1PA7 LINE L1 5760 6151 -3 25 31 0 0 chr11 57313043 57313075 -93470478 + AT_rich Low_complexity Low_complexity 1 32 0 25 31 0 0 chr11 57313135 57313167 -93470386 + AT_rich Low_complexity Low_complexity 1 32 0 431 305 121 19 chr11 57313260 57313897 -93469656 - L1ME3A LINE L1 -176 5994 5293 238 279 178 7 chr11 57313949 57314218 -93469335 - L1ME3A LINE L1 -917 5229 4915 23 0 0 0 chr11 57315309 57315332 -93468221 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 57316989 57317010 -93466543 + AT_rich Low_complexity Low_complexity 1 21 0 255 93 0 0 chr11 57317187 57317230 -93466323 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 222 419 22 0 chr11 57318869 57319005 -93464548 + L2 LINE L2 2850 2988 -325 231 251 0 18 chr11 57319010 57319173 -93464380 + (TA)n Simple_repeat Simple_repeat 2 161 0 325 329 58 64 chr11 57319210 57319523 -93464030 + L2 LINE L2 3003 3313 0 900 213 39 13 chr11 57321706 57321936 -93461617 + MLT2B3 LTR ERVL 5 240 -314 298 336 37 0 chr11 57321916 57322050 -93461503 + MLT2B3 LTR ERVL 370 508 -46 * 704 203 203 0 chr11 57322060 57322247 -93461306 - Tigger3(Golem) DNA MER2_type -3 3026 2802 246 62 0 0 chr11 57322248 57322280 -93461273 + (TA)n Simple_repeat Simple_repeat 1 32 0 309 67 22 0 chr11 57322293 57322338 -93461215 + MLT2D LTR ERVL 369 414 0 988 117 13 39 chr11 57423299 57423453 -93360100 + FRAM SINE Alu 21 170 -6 2192 109 0 39 chr11 57423456 57423768 -93359785 + AluSg SINE Alu 1 300 -10 499 209 269 22 chr11 57423774 57423956 -93359597 - MIR SINE MIR -21 241 15 337 283 71 48 chr11 57424013 57424223 -93359330 - MIR SINE MIR -40 222 14 216 288 41 0 chr11 57424520 57424593 -93358960 + MIR SINE MIR 113 188 -74 333 324 151 0 chr11 57425123 57425308 -93358245 + MIR SINE MIR 18 230 -32 958 112 0 15 chr11 57425442 57425576 -93357977 - AluSp SINE Alu -181 132 1 437 132 0 0 chr11 57425582 57425650 -93357903 + MSTA LTR MaLR 361 428 0 285 309 72 0 chr11 57425859 57425956 -93357597 + MIR SINE MIR 96 199 -63 661 257 47 85 chr11 57426076 57426122 -93357431 - MLT1L LTR MaLR -4 611 565 2385 98 3 0 chr11 57426122 57426427 -93357126 + AluSg SINE Alu 1 306 -4 661 257 47 85 chr11 57426427 57426844 -93356709 - MLT1L LTR MaLR -50 565 125 1721 166 6 68 chr11 57427064 57427390 -93356163 - AluJb SINE Alu -6 306 1 226 333 100 0 chr11 57427390 57427480 -93356073 - L2 LINE L2 -3 3269 3171 2532 81 0 0 chr11 57427518 57427859 -93355694 - AluSg SINE Alu 0 341 1 711 262 76 55 chr11 57427865 57428140 -93355413 + L2 LINE L2 3031 3311 -2 310 260 83 10 chr11 57428315 57428411 -93355142 + MIR SINE MIR 96 198 -64 646 184 0 9 chr11 57428556 57428670 -93354883 + AluJb SINE Alu 174 286 -26 484 146 29 58 chr11 57428673 57428801 -93354752 - MER93b LTR ERV1 -164 209 86 3368 128 45 7 chr11 57428801 57429082 -93354471 + Tigger3b DNA MER2_type 1 270 -2758 2309 107 0 10 chr11 57429082 57429390 -93354163 - AluSx SINE Alu -7 305 1 3368 128 45 7 chr11 57429390 57429685 -93353868 + Tigger3b DNA MER2_type 270 599 -632 1521 153 13 13 chr11 57429687 57429923 -93353630 + AluJb SINE Alu 3 238 -74 2153 90 38 3 chr11 57430038 57430326 -93353227 - AluSq SINE Alu -15 298 1 1610 185 55 37 chr11 57430345 57430393 -93353160 - L1M3 LINE L1 -629 5555 5509 489 71 191 0 chr11 57430393 57430477 -93353076 - HY3 scRNA scRNA -1 100 1 1610 185 55 37 chr11 57430477 57430551 -93353002 - L1M3 LINE L1 -675 5509 5438 2544 84 0 3 chr11 57430551 57430861 -93352692 - AluSx SINE Alu -3 309 1 1610 185 55 37 chr11 57430861 57431279 -93352274 - L1M3 LINE L1 -746 5438 5029 981 133 0 0 chr11 57431279 57431437 -93352116 + (TTCC)n Simple_repeat Simple_repeat 3 160 0 2285 90 0 4 chr11 57431446 57431724 -93351829 - AluSc SINE Alu -32 277 1 1610 185 55 37 chr11 57431724 57431810 -93351743 - L1M3 LINE L1 -1162 5022 4963 1933 158 16 0 chr11 57431893 57432197 -93351356 - AluSx SINE Alu -3 309 1 1027 188 21 0 chr11 57432213 57432399 -93351154 - AluJo SINE Alu -1 311 122 2435 100 0 0 chr11 57432738 57433047 -93350506 - AluSx SINE Alu -2 310 2 318 233 33 22 chr11 57433047 57433137 -93350416 + MIR SINE MIR 102 192 -70 203 331 86 63 chr11 57433141 57433316 -93350237 + MIR SINE MIR 13 191 -71 1704 181 3 31 chr11 57433360 57433539 -93350014 - AluJb SINE Alu 0 312 143 2138 127 7 7 chr11 57433539 57433847 -93349706 - AluSx SINE Alu -4 308 1 1704 181 3 31 chr11 57433847 57433987 -93349566 - AluJb SINE Alu -169 143 1 648 232 21 57 chr11 57434177 57434371 -93349182 - MIR SINE MIR -47 215 29 1164 163 6 0 chr11 57434484 57434662 -93348891 - AluJb SINE Alu -12 300 122 1783 196 0 0 chr11 57434682 57434973 -93348580 - AluJb SINE Alu -21 291 1 276 286 184 0 chr11 57435111 57435258 -93348295 - MIR SINE MIR -77 185 12 262 302 32 0 chr11 57435258 57435384 -93348169 + MER113 DNA MER1_type? 8 137 -384 225 241 19 0 chr11 57435433 57435487 -93348066 + (TA)n Simple_repeat Simple_repeat 2 56 0 2194 126 0 16 chr11 57435490 57435807 -93347746 - AluSx SINE Alu 0 312 1 294 308 138 6 chr11 57436350 57436509 -93347044 + MIR SINE MIR 13 192 -70 495 251 144 10 chr11 57436727 57436816 -93346737 - Charlie8 DNA MER1_type -2151 266 190 2538 65 0 13 chr11 57436816 57437125 -93346428 - AluY SINE Alu -6 305 1 495 251 144 10 chr11 57437125 57437230 -93346323 - Charlie8 DNA MER1_type -2227 190 46 211 298 18 0 chr11 57437333 57437390 -93346163 + L2 LINE L2 3214 3271 -1 246 162 0 0 chr11 57437414 57437451 -93346102 + AluSx SINE Alu 1 37 -265 2161 113 3 0 chr11 57437551 57437835 -93345718 + AluSx SINE Alu 26 310 -2 2262 116 0 0 chr11 57438305 57438607 -93344946 - AluSx SINE Alu -10 302 1 637 184 76 32 chr11 57438810 57438968 -93344585 - MER96B DNA MER1_type? -252 165 1 894 239 18 14 chr11 57439132 57439350 -93344203 + MER20 DNA MER1_type 1 219 0 933 175 0 0 chr11 57439413 57439556 -93343997 + FRAM SINE Alu 18 160 -16 1995 100 100 4 chr11 57439561 57439841 -93343712 + AluSg SINE Alu 1 307 -3 256 271 69 62 chr11 57439874 57440018 -93343535 + MIR3 SINE MIR 19 163 -45 2534 84 0 0 chr11 57441215 57441524 -93342029 - AluSg SINE Alu 0 310 2 905 208 0 0 chr11 57442232 57442400 -93341153 - MER5A DNA MER1_type -1 188 21 883 260 17 4 chr11 57442421 57442652 -93340901 + MIR SINE MIR 29 262 0 222 270 59 118 chr11 57442960 57443334 -93340219 - L2 LINE L2 -338 2976 2625 720 283 94 0 chr11 57443364 57443587 -93339966 - MIR SINE MIR -12 250 7 2221 123 3 0 chr11 57443788 57444089 -93339464 + AluSx SINE Alu 1 302 -10 340 240 19 48 chr11 57444157 57444214 -93339339 + Charlie8 DNA MER1_type 92 146 -184 2145 133 3 0 chr11 57444214 57444514 -93339039 + AluSx SINE Alu 1 301 -11 340 240 19 48 chr11 57444514 57444560 -93338993 + Charlie8 DNA MER1_type 146 192 -138 1093 239 79 85 chr11 57444727 57445324 -93338229 + MLT1E LTR MaLR 1 593 0 273 200 0 225 chr11 57445391 57445449 -93338104 - L2 LINE L2 -37 3276 3257 1835 169 6 10 chr11 57445449 57445762 -93337791 + AluJo SINE Alu 1 312 0 273 200 0 225 chr11 57445762 57445823 -93337730 - L2 LINE L2 -56 3257 3184 849 112 0 24 chr11 57445994 57446119 -93337434 - FLAM_A SINE Alu -11 122 1 331 236 14 53 chr11 57446120 57446217 -93337336 + L1MC3 LINE L1 1998 6926 -1139 726 147 9 0 chr11 57446218 57446334 -93337219 - FLAM_C SINE Alu -21 122 6 347 223 88 24 chr11 57447260 57447401 -93336152 - MIR SINE MIR -32 176 66 521 212 23 38 chr11 57447423 57447555 -93335998 - MIR SINE MIR -66 196 67 1096 255 47 14 chr11 57447621 57448090 -93335463 - MLT1F1 LTR MaLR 0 567 2 1194 43 14 0 chr11 57448099 57448238 -93335315 - AluSg/x SINE Alu -10 300 160 354 239 71 76 chr11 57448681 57448865 -93334688 - MER5A DNA MER1_type -3 186 4 359 311 102 31 chr11 57449607 57449861 -93333692 - L3 LINE CR1 -111 1466 1195 1303 294 71 17 chr11 57450044 57450906 -93332647 + L2 LINE L2 2404 3309 -4 225 346 87 0 chr11 57450913 57451017 -93332536 - MIR SINE MIR -87 175 63 321 62 0 0 chr11 57451238 57451286 -93332267 + MADE1 DNA Mariner 33 80 0 1702 111 127 12 chr11 57451298 57451576 -93331977 + AluSg SINE Alu 1 307 0 1675 183 10 0 chr11 57451636 57451936 -93331617 + AluJo SINE Alu 1 303 -9 188 260 20 0 chr11 57451962 57452012 -93331541 - MIR SINE MIR -63 145 95 182 186 47 0 chr11 57452365 57452408 -93331145 - MIR SINE MIR -113 149 105 203 257 43 14 chr11 57453388 57453458 -93330095 + MIR SINE MIR 46 117 -91 265 364 69 12 chr11 57453508 57453755 -93329798 - L2 LINE L2 -509 2805 2545 280 267 59 15 chr11 57454058 57454193 -93329360 - MER103 DNA DNA -12 154 14 2135 118 0 0 chr11 57454246 57454526 -93329027 + AluSx SINE Alu 1 280 -32 186 43 0 0 chr11 57454536 57454559 -93328994 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 316 207 110 0 chr11 57454568 57454650 -93328903 - MIR3 SINE MIR -48 160 70 2373 76 3 7 chr11 57455128 57455430 -93328123 + AluSx SINE Alu 1 301 -11 512 224 68 34 chr11 57456406 57456611 -93326942 + L2 LINE L2 3056 3267 -46 245 235 0 0 chr11 57456635 57456703 -93326850 + (CA)n Simple_repeat Simple_repeat 2 69 0 793 181 0 0 chr11 57457807 57457940 -93325613 + FLAM_C SINE Alu 1 133 0 298 148 0 19 chr11 57457997 57458051 -93325502 - MIR SINE MIR 0 262 210 432 97 0 0 chr11 57458353 57458415 -93325138 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 364 221 97 9 chr11 57458611 57458724 -93324829 + MER5A DNA MER1_type 60 182 -7 438 292 56 6 chr11 57460512 57460673 -93322880 + MIR SINE MIR 40 208 -54 200 241 19 0 chr11 57462419 57462473 -93321080 + L3 LINE CR1 1180 1234 -343 272 289 266 0 chr11 57462491 57462664 -93320889 + MIR SINE MIR 44 262 0 457 243 171 27 chr11 57462680 57462902 -93320651 + L3 LINE CR1 1277 1530 -47 1662 194 0 29 chr11 57462984 57463294 -93320259 + AluJo SINE Alu 1 301 -11 2410 78 0 31 chr11 57463297 57463618 -93319935 + AluY SINE Alu 1 311 0 359 100 0 0 chr11 57464181 57464231 -93319322 + Alu SINE Alu 247 296 -6 * 2360 96 40 240 chr11 57464215 57464442 -93319111 + Tigger3(Golem) DNA MER2_type 2379 2650 -378 1300 124 0 0 chr11 57464442 57464620 -93318933 - AluSq SINE Alu -1 312 135 2160 118 0 38 chr11 57464621 57464935 -93318618 - AluSx SINE Alu -10 302 1 2360 96 40 240 chr11 57464935 57465337 -93318216 + Tigger3(Golem) DNA MER2_type 2649 3024 -4 2133 124 0 10 chr11 57465365 57465664 -93317889 - AluSx SINE Alu -16 296 1 1874 145 0 35 chr11 57465670 57465980 -93317573 - AluJo SINE Alu 0 312 14 312 319 17 9 chr11 57466248 57466364 -93317189 - L2 LINE L2 -184 3088 2972 1675 196 7 7 chr11 57466458 57466744 -93316809 + AluJo SINE Alu 1 286 -26 1973 123 50 17 chr11 57466755 57467057 -93316496 + AluSx SINE Alu 1 312 0 196 236 134 39 chr11 57467392 57467519 -93316034 - MIR3 SINE MIR -11 197 59 2159 113 10 7 chr11 57467867 57468168 -93315385 + AluSx SINE Alu 1 302 -10 2228 111 6 16 chr11 57469517 57469832 -93313721 - AluSx SINE Alu 0 312 1 2404 91 3 0 chr11 57470507 57470805 -93312748 + AluSg SINE Alu 1 299 -11 1878 233 32 57 chr11 57470805 57471056 -93312497 - L1ME3 LINE L1 -8 6154 5898 1906 164 7 3 chr11 57471056 57471349 -93312204 + AluJb SINE Alu 2 295 -17 2485 65 0 47 chr11 57471352 57471673 -93311880 + AluY SINE Alu 1 306 -5 1878 233 32 57 chr11 57471673 57471976 -93311577 - L1ME3 LINE L1 -266 5896 5610 399 266 121 0 chr11 57471976 57472100 -93311453 + MLT2F LTR ERVL 1 139 -524 294 296 72 32 chr11 57472157 57472282 -93311271 + MLT2F LTR ERVL 275 404 -259 1021 233 0 5 chr11 57472402 57472608 -93310945 + MER20 DNA MER1_type 1 205 -14 1259 312 107 32 chr11 57472680 57473012 -93310541 - L2 LINE L2 -590 2724 2418 294 29 0 0 chr11 57473012 57473047 -93310506 + (TG)n Simple_repeat Simple_repeat 2 36 0 1259 312 107 32 chr11 57473047 57473620 -93309933 - L2 LINE L2 -896 2418 1751 498 284 13 52 chr11 57474223 57474455 -93309098 - L2 LINE L2 -72 3241 3019 183 283 33 0 chr11 57474860 57474920 -93308633 + MIR3 SINE MIR 129 190 -18 2347 200 39 29 chr11 57475400 57475967 -93307586 - MLT1E3 LTR MaLR 0 624 42 227 240 20 0 chr11 57476169 57476219 -93307334 - Charlie4 DNA MER1_type -1910 51 1 794 282 111 68 chr11 57477052 57477477 -93306076 - LTR67 LTR ERVL 0 557 115 678 229 24 62 chr11 57477598 57477808 -93305745 - MIR SINE MIR -58 204 3 215 338 13 0 chr11 57478225 57478302 -93305251 + L2 LINE L2 2905 2982 -290 463 300 9 0 chr11 57478642 57478752 -93304801 - L2 LINE L2 0 3272 3162 264 259 35 24 chr11 57478903 57478988 -93304565 + MIR SINE MIR 117 202 -60 2005 155 0 0 chr11 57479020 57479304 -93304249 - AluSx SINE Alu -28 284 1 288 295 65 50 chr11 57479445 57479584 -93303969 + MER5B DNA MER1_type 1 141 -37 258 366 79 14 chr11 57479807 57480173 -93303380 - L1MC4a LINE L1 -1870 5938 5549 249 196 0 18 chr11 57480203 57480259 -93303294 - MER5B DNA MER1_type -123 55 1 202 128 0 26 chr11 57481090 57481129 -93302424 + (TG)n Simple_repeat Simple_repeat 2 39 0 263 278 15 11 chr11 57481490 57481624 -93301929 - MIR SINE MIR -70 192 14 206 316 13 26 chr11 57482693 57482769 -93300784 + MIR SINE MIR 18 92 -116 1182 116 0 0 chr11 57482769 57482964 -93300589 + AluSp SINE Alu 131 325 0 489 226 77 30 chr11 57484211 57484379 -93299174 + LTR16C LTR ERVL 316 491 0 183 308 202 48 chr11 57484496 57484704 -93298849 - MIR SINE MIR -15 247 8 234 274 60 12 chr11 57485271 57485355 -93298198 - MIR SINE MIR 0 262 175 318 329 53 0 chr11 57485416 57485586 -93297967 + L1ME3 LINE L1 5984 6162 0 2513 67 0 7 chr11 57485594 57485891 -93297662 + AluSp SINE Alu 1 295 -18 250 304 36 58 chr11 57485957 57486095 -93297458 + L2 LINE L2 3161 3295 -18 523 272 134 60 chr11 57486283 57486559 -93296994 - L1MC4a LINE L1 -534 5825 5917 2685 73 0 8 chr11 57486559 57486917 -93296636 - THE1A LTR MaLR 0 355 1 523 272 134 60 chr11 57486917 57487173 -93296380 - L1MC4a LINE L1 -441 5918 5682 479 263 52 13 chr11 57487174 57487406 -93296147 - L2 LINE L2 -652 2662 2422 193 231 39 0 chr11 57488851 57488903 -93294650 - MIR SINE MIR -131 131 78 1827 164 0 16 chr11 57489037 57489342 -93294211 - AluJo SINE Alu -12 300 1 292 256 37 27 chr11 57489410 57489528 -93294025 + MIR SINE MIR 50 166 -63 243 0 0 0 chr11 57489929 57489956 -93293597 + (CA)n Simple_repeat Simple_repeat 2 28 0 238 265 119 73 chr11 57490328 57490479 -93293074 + MIR3 SINE MIR 48 205 -3 294 73 0 0 chr11 57490704 57490745 -93292808 + (TG)n Simple_repeat Simple_repeat 2 42 0 359 301 186 10 chr11 57490970 57491163 -93292390 + MIR SINE MIR 17 243 -19 438 226 0 0 chr11 57491383 57491467 -93292086 - L2 LINE L2 0 3272 3189 205 296 74 59 chr11 57491603 57491738 -93291815 + L2 LINE L2 2715 2851 -463 263 365 79 41 chr11 57491772 57492114 -93291439 + L2 LINE L2 2918 3272 0 254 227 227 45 chr11 57492210 57492320 -93291233 + MIR SINE MIR 57 186 -76 1291 182 71 41 chr11 57492371 57492586 -93290967 + L1MB8 LINE L1 5700 5907 -277 2152 128 26 3 chr11 57492586 57492891 -93290662 + AluSx SINE Alu 1 312 0 1291 182 71 41 chr11 57492891 57493069 -93290484 + L1MB8 LINE L1 5907 6181 -3 1733 165 45 10 chr11 57493227 57493398 -93290155 - AluJb SINE Alu -10 302 115 225 0 0 0 chr11 57493398 57493423 -93290130 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1733 165 45 10 chr11 57493423 57493542 -93290011 - AluJb SINE Alu -197 115 2 217 304 222 22 chr11 57493820 57493955 -93289598 - MIR SINE MIR -98 164 3 1403 37 9 0 chr11 57493961 57494175 -93289378 + (TTC)n Simple_repeat Simple_repeat 1 216 0 741 240 23 0 chr11 57494181 57494352 -93289201 - FRAM SINE Alu -1 175 1 327 259 9 18 chr11 57494382 57494494 -93289059 - L1ME4a LINE L1 -43 6078 5968 276 321 9 0 chr11 57494512 57494624 -93288929 - L1ME4a LINE L1 -244 5877 5765 647 120 0 0 chr11 57495022 57495142 -93288411 - AluJb SINE Alu 0 309 190 2284 82 4 0 chr11 57495432 57495744 -93287809 - AluSc SINE Alu 0 313 1 324 186 221 26 chr11 57495871 57495984 -93287569 + MIR SINE MIR 59 193 -69 564 317 93 0 chr11 57496009 57496214 -93287339 + MIR SINE MIR 23 246 -16 265 328 153 27 chr11 57496643 57496826 -93286727 + MIR SINE MIR 55 260 -2 2195 98 27 14 chr11 57496887 57497183 -93286370 - AluSg SINE Alu -10 300 1 285 323 0 60 chr11 57497383 57497516 -93286037 + L2 LINE L2 3173 3297 -16 362 21 21 0 chr11 57497522 57497569 -93285984 + (GA)n Simple_repeat Simple_repeat 1 48 0 221 254 109 75 chr11 57497816 57498017 -93285536 - MIR SINE MIR -14 248 41 34 0 0 0 chr11 57498017 57498051 -93285502 + AT_rich Low_complexity Low_complexity 1 34 0 351 296 159 0 chr11 57498220 57498396 -93285157 + MIR SINE MIR 53 256 -6 401 318 111 38 chr11 57498498 57498813 -93284740 - L2 LINE L2 0 3272 2935 326 102 0 34 chr11 57498926 57498985 -93284568 + Alu SINE Alu 246 302 0 744 193 14 0 chr11 57499001 57499141 -93284412 - FRAM SINE Alu -36 140 1 2244 130 25 62 chr11 57499144 57499627 -93283926 + L1MB8 LINE L1 5708 6172 -6 625 136 0 2 chr11 57499845 57500095 -93283458 + AluSx SINE Alu 1 295 -14 399 275 53 31 chr11 57500556 57500737 -93282816 - MIR SINE MIR -59 203 17 477 271 95 27 chr11 57503585 57503806 -93279747 + MIR SINE MIR 24 259 -3 298 253 81 40 chr11 57503821 57503920 -93279633 + MIR SINE MIR 40 142 -66 1016 68 0 0 chr11 57503991 57504123 -93279430 + L1PA10 LINE L1 6032 6163 -5 1974 154 3 3 chr11 57504150 57504448 -93279105 + AluJb SINE Alu 1 298 -14 1892 128 41 14 chr11 57504956 57505246 -93278307 + AluJb SINE Alu 9 306 -6 308 302 17 43 chr11 57505420 57505536 -93278017 + L2 LINE L2 3192 3304 -9 396 349 53 72 chr11 57505551 57505604 -93277949 + L2 LINE L2 2918 2971 -301 2034 139 6 25 chr11 57505604 57505783 -93277770 - AluSx SINE Alu -1 311 139 2428 97 0 3 chr11 57505783 57506091 -93277462 - AluSg SINE Alu -3 307 1 2034 139 6 25 chr11 57506091 57506228 -93277325 - AluSx SINE Alu -173 139 1 396 349 53 72 chr11 57506228 57506535 -93277018 + L2 LINE L2 2971 3271 -1 1970 75 57 35 chr11 57506786 57506807 -93276746 + L1PA8A LINE L1 5805 5824 -307 1937 115 4 0 chr11 57506807 57507060 -93276493 + AluSp SINE Alu 1 254 -59 1970 75 57 35 chr11 57507060 57507356 -93276197 + L1PA8A LINE L1 5824 6129 -2 1816 163 3 38 chr11 57507409 57507729 -93275824 + AluSx SINE Alu 1 309 -3 422 302 81 0 chr11 57507913 57508062 -93275491 + MIR SINE MIR 6 166 -96 2438 84 7 0 chr11 57508115 57508411 -93275142 + AluSx SINE Alu 1 298 -14 3555 131 8 21 chr11 57508432 57509001 -93274552 + L1MB7 LINE L1 5550 6111 -84 2022 153 3 6 chr11 57509001 57509314 -93274239 - AluJb SINE Alu 0 312 1 3555 131 8 21 chr11 57509314 57509398 -93274155 + L1MB7 LINE L1 6111 6195 0 291 269 51 0 chr11 57509407 57509485 -93274068 - L2 LINE L2 -50 3222 3141 503 313 153 18 chr11 57509851 57510302 -93273251 + L2 LINE L2 2329 2840 -474 1932 128 14 14 chr11 57510423 57510736 -93272817 - AluSx SINE Alu 0 315 3 219 348 27 9 chr11 57510969 57511081 -93272472 + L2 LINE L2 2978 3091 -181 774 143 0 8 chr11 57511110 57511229 -93272324 - FLAM_C SINE Alu -15 118 1 297 0 0 0 chr11 57511369 57511402 -93272151 + (A)n Simple_repeat Simple_repeat 1 33 0 1124 176 0 0 chr11 57511409 57511579 -93271974 + AluJb SINE Alu 131 300 -12 207 200 0 0 chr11 57511626 57511666 -93271887 + GA-rich Low_complexity Low_complexity 4 43 0 1219 218 86 84 chr11 57511782 57512434 -93271119 + L1MC5 LINE L1 6479 7149 -720 2149 108 40 0 chr11 57512434 57512731 -93270822 + AluSx SINE Alu 1 309 -3 1219 218 86 84 chr11 57512731 57512821 -93270732 + L1MC5 LINE L1 7149 7237 -632 1191 211 71 53 chr11 57512968 57513461 -93270092 + L1MC5 LINE L1 7299 7800 -161 703 290 50 84 chr11 57513614 57514090 -93269463 + L2 LINE L2 2813 3272 0 2237 118 13 0 chr11 57514125 57514429 -93269124 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr11 57515655 57515676 -93267877 + AT_rich Low_complexity Low_complexity 1 21 0 936 258 32 11 chr11 57515731 57516010 -93267543 - L1MA9 LINE L1 -38 6274 5990 508 259 71 53 chr11 57516645 57516815 -93266738 + MER5B DNA MER1_type 3 175 -3 * 521 294 54 2 chr11 57516815 57516980 -93266573 + MIR SINE MIR 29 202 -60 1326 237 122 39 chr11 57517032 57517539 -93266014 + MLT1H LTR MaLR 1 549 0 1077 128 0 61 chr11 57517814 57517963 -93265590 + L1MB3 LINE L1 5689 5825 -358 1479 192 34 24 chr11 57517963 57518260 -93265293 + AluJo SINE Alu 13 312 0 1077 128 0 61 chr11 57518260 57518306 -93265247 + L1MB3 LINE L1 5825 5872 -311 1135 192 10 20 chr11 57518308 57518506 -93265047 + AluJo SINE Alu 1 196 -116 2307 83 0 0 chr11 57518521 57518799 -93264754 + AluSx SINE Alu 18 295 -17 231 122 0 20 chr11 57518799 57518848 -93264705 + L1MB4 LINE L1 6132 6179 -1 370 240 80 47 chr11 57519246 57519396 -93264157 - MIR3 SINE MIR -48 160 6 2091 142 7 0 chr11 57519412 57519714 -93263839 + AluSx SINE Alu 1 304 -8 835 307 52 15 chr11 57519996 57520325 -93263228 - MLT1L LTR MaLR -155 460 120 675 261 86 13 chr11 57520623 57520857 -93262696 + MIR SINE MIR 9 259 -3 200 294 0 0 chr11 57520992 57521043 -93262510 - L2 LINE L2 0 3272 3222 302 294 246 0 chr11 57521776 57521902 -93261651 - L2 LINE L2 -1 3271 3115 1241 229 125 26 chr11 57522022 57522437 -93261116 + MER113 DNA MER1_type? 66 521 0 248 275 46 46 chr11 57522971 57523102 -93260451 + MIR SINE MIR 18 148 -60 2253 99 13 22 chr11 57523313 57523626 -93259927 - AluSx SINE Alu -2 310 1 355 285 112 4 chr11 57524300 57524454 -93259099 + MIR3 SINE MIR 23 186 -43 272 273 0 13 chr11 57526631 57526708 -93256845 - MIR SINE MIR -111 151 76 200 256 0 78 chr11 57527091 57527181 -93256372 + CT-rich Low_complexity Low_complexity 4 86 0 271 284 181 24 chr11 57528054 57528181 -93255372 + MIR SINE MIR 34 180 -82 304 277 151 0 chr11 57529100 57529219 -93254334 - L2 LINE L2 0 3272 3136 219 268 18 0 chr11 57530336 57530392 -93253161 + MIR SINE MIR 91 147 -115 400 304 121 42 chr11 57531340 57531552 -93252001 - MIR SINE MIR 0 262 27 2129 128 0 6 chr11 57531552 57531864 -93251689 - AluSx SINE Alu -2 310 1 400 304 121 42 chr11 57531864 57531891 -93251662 - MIR SINE MIR -235 27 4 287 341 32 8 chr11 57532479 57532605 -93250948 + MIR SINE MIR 17 145 -63 790 228 64 44 chr11 57533080 57533330 -93250223 - MIR SINE MIR 0 262 8 939 243 63 1 chr11 57534102 57534328 -93249225 + MIR SINE MIR 7 242 -20 1095 80 0 0 chr11 57534428 57534565 -93248988 - AluSq/x SINE Alu -175 137 1 989 259 54 45 chr11 57534908 57535005 -93248548 - L1MC4a LINE L1 -1879 5929 5834 2166 109 3 3 chr11 57535005 57535307 -93248246 + AluSq SINE Alu 1 302 -11 989 259 54 45 chr11 57535307 57535633 -93247920 - L1MC4a LINE L1 -1974 5834 5502 1209 81 16 0 chr11 57535720 57535905 -93247648 + L1MA4A LINE L1 5998 6185 -118 579 149 0 0 chr11 57535906 57535993 -93247560 + 5S rRNA rRNA 1 87 -34 835 117 16 0 chr11 57535993 57536121 -93247432 + L1MA4A LINE L1 6170 6299 -4 1871 135 0 40 chr11 57536122 57536447 -93247106 + AluJo SINE Alu 1 312 0 799 299 28 12 chr11 57536462 57536713 -93246840 + MIR SINE MIR 8 262 0 227 222 37 74 chr11 57537096 57537204 -93246349 - MER113 DNA MER1_type? -405 116 13 527 321 24 0 chr11 57537241 57537406 -93246147 + MIR SINE MIR 23 191 -71 785 166 0 183 chr11 57537415 57537650 -93245903 + 7SK RNA RNA 2 193 0 741 164 0 0 chr11 57537674 57537808 -93245745 + FLAM_A SINE Alu 6 139 0 229 310 28 21 chr11 57538146 57538288 -93245265 - L1ME LINE L1 -224 5897 5755 533 335 56 21 chr11 57538345 57538685 -93244868 - L1ME LINE L1 -458 5663 5312 265 317 58 0 chr11 57539433 57539553 -93244000 - L2 LINE L2 -10 3262 3136 231 288 41 14 chr11 57539683 57539756 -93243797 + MIR SINE MIR 39 113 -149 1510 284 112 4 chr11 57539930 57539998 -93243555 - MER115 DNA AcHobo -158 535 476 2258 88 3 0 chr11 57539998 57540294 -93243259 + AluSq SINE Alu 1 297 -16 1510 284 112 4 chr11 57540294 57540707 -93242846 - MER115 DNA AcHobo -217 476 2 303 308 169 0 chr11 57540707 57540837 -93242716 + MIR SINE MIR 107 258 -4 1932 117 33 0 chr11 57540850 57541124 -93242429 + AluSg SINE Alu 1 283 -27 467 45 0 15 chr11 57541124 57541191 -93242362 + (CATA)n Simple_repeat Simple_repeat 2 67 0 337 318 38 0 chr11 57541647 57541779 -93241774 - MIR3 SINE MIR -34 174 38 1602 157 30 37 chr11 57541941 57542240 -93241313 + AluJb SINE Alu 2 298 -14 241 297 68 17 chr11 57542320 57542438 -93241115 - MIR SINE MIR 0 262 139 369 93 0 0 chr11 57542447 57542501 -93241052 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 252 86 0 0 chr11 57542582 57542617 -93240936 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 679 189 0 16 chr11 57542617 57542735 -93240818 - FLAM_C SINE Alu -193 119 2 319 318 101 31 chr11 57542739 57542868 -93240685 - MIR SINE MIR -118 144 7 294 237 203 51 chr11 57543553 57543671 -93239882 - MIR3 SINE MIR -62 146 11 192 339 62 0 chr11 57543839 57543904 -93239649 - L2 LINE L2 -60 3253 3185 372 255 5 53 chr11 57544635 57544823 -93238730 + GA-rich Low_complexity Low_complexity 2 180 0 239 233 0 50 chr11 57544945 57545005 -93238548 - L2 LINE L2 -13 3300 3244 195 100 0 0 chr11 57546366 57546396 -93237157 + (CCCCG)n Simple_repeat Simple_repeat 1 30 0 302 297 0 42 chr11 57547159 57547277 -93236276 + G-rich Low_complexity Low_complexity 3 115 0 205 293 0 17 chr11 57547565 57547623 -93235930 + G-rich Low_complexity Low_complexity 2 58 0 365 340 27 21 chr11 57548838 57549026 -93234527 + MIR SINE MIR 53 241 -21 259 314 0 48 chr11 57549245 57549350 -93234203 + MIR3 SINE MIR 102 201 -7 468 326 34 6 chr11 57550277 57550455 -93233098 + MIR3 SINE MIR 20 202 -6 1808 163 0 16 chr11 57551594 57551715 -93231838 + AluJo SINE Alu 1 122 -190 2519 45 0 16 chr11 57551715 57552028 -93231525 - AluY SINE Alu -3 308 1 1808 163 0 16 chr11 57552028 57552213 -93231340 + AluJo SINE Alu 122 302 -10 1191 132 73 5 chr11 57552491 57552696 -93230857 + MER20 DNA MER1_type 1 219 0 1895 138 0 13 chr11 57552924 57553228 -93230325 - AluJo SINE Alu -2 310 11 278 280 9 51 chr11 57553943 57554181 -93229372 + CT-rich Low_complexity Low_complexity 1 227 0 209 173 0 39 chr11 57554569 57554621 -93228932 + (TTA)n Simple_repeat Simple_repeat 3 52 0 328 280 119 8 chr11 57554897 57555015 -93228538 - L2 LINE L2 -12 3301 3171 721 239 32 5 chr11 57555150 57555338 -93228215 + MIR SINE MIR 65 257 -5 535 259 93 89 chr11 57555835 57555978 -93227575 + MIR SINE MIR 18 164 -98 2145 116 3 0 chr11 57555978 57556271 -93227282 - AluSx SINE Alu -18 294 1 535 259 93 89 chr11 57556271 57556363 -93227190 + MIR SINE MIR 164 254 -8 192 40 0 0 chr11 57556378 57556403 -93227150 + (CTA)n Simple_repeat Simple_repeat 2 26 0 690 297 23 19 chr11 57556460 57556682 -93226871 + MIR SINE MIR 2 227 -35 2166 123 0 0 chr11 57556682 57556983 -93226570 + AluSx SINE Alu 6 306 -6 690 297 23 19 chr11 57556983 57557019 -93226534 + MIR SINE MIR 227 261 -1 491 248 28 41 chr11 57557433 57557578 -93225975 - L2 LINE L2 -1 3312 3170 2326 86 3 0 chr11 57557578 57557880 -93225673 - AluSx SINE Alu -6 306 4 1736 141 22 0 chr11 57557925 57558236 -93225317 - AluJb SINE Alu 0 317 1 668 284 39 5 chr11 57558282 57558486 -93225067 + MIR SINE MIR 48 258 -4 299 242 32 21 chr11 57558509 57558604 -93224949 - MIR SINE MIR -137 125 30 760 268 34 1 chr11 57558612 57558818 -93224735 + MIR SINE MIR 40 249 -13 247 208 0 0 chr11 57558891 57558939 -93224614 + L2 LINE L2 3223 3270 -2 494 274 8 0 chr11 57558954 57559078 -93224475 - MIR3 SINE MIR -3 205 81 215 167 0 37 chr11 57559287 57559341 -93224212 + G-rich Low_complexity Low_complexity 1 52 0 194 282 84 0 chr11 57560377 57560448 -93223105 + MIR3 SINE MIR 95 171 -37 204 253 27 40 chr11 57560448 57560523 -93223030 - MER5A DNA MER1_type 0 189 116 509 284 55 30 chr11 57560826 57561062 -93222491 - MIR SINE MIR -1 261 20 467 265 40 20 chr11 57561081 57561232 -93222321 - MIR SINE MIR -19 243 90 216 143 0 0 chr11 57561250 57561292 -93222261 + (CAAAAA)n Simple_repeat Simple_repeat 4 45 0 485 276 27 75 chr11 57561300 57561499 -93222054 - MIR SINE MIR -3 205 15 433 304 58 0 chr11 57561516 57561687 -93221866 + MER5A DNA MER1_type 9 189 0 21 71 0 0 chr11 57562304 57562346 -93221207 + GC_rich Low_complexity Low_complexity 1 42 0 27 29 0 0 chr11 57563227 57563261 -93220292 + AT_rich Low_complexity Low_complexity 1 34 0 681 271 26 21 chr11 57563656 57563848 -93219705 - MER91A DNA MER1_type -3 193 1 707 197 0 0 chr11 57564172 57564294 -93219259 + FLAM_A SINE Alu 1 122 -11 1306 147 0 18 chr11 57564322 57564540 -93219013 + AluSq SINE Alu 5 218 -95 318 292 10 10 chr11 57565369 57565465 -93218088 - MIR3 SINE MIR -24 184 89 447 339 83 44 chr11 57565557 57565967 -93217586 + L2 LINE L2 2456 2881 -433 385 232 11 77 chr11 57566739 57566905 -93216648 + MIR SINE MIR 61 209 -53 2002 78 7 0 chr11 57667198 57667468 -93116085 + HERVL LTR ERVL 5262 5533 -121 278 320 120 51 chr11 57667971 57668146 -93115407 - MLT1G LTR MaLR 0 595 409 321 274 96 65 chr11 57668198 57668435 -93115118 - MLT1G LTR MaLR -284 271 1 3340 53 5 2 chr11 57668594 57669006 -93114547 - L1PA7 LINE L1 -206 5948 5536 1548 79 0 23 chr11 57669006 57669220 -93114333 + L1PA7 LINE L1 5944 6153 -1 452 131 0 12 chr11 57669728 57669812 -93113741 + (TCCC)n Simple_repeat Simple_repeat 4 86 0 184 51 26 51 chr11 57670816 57670855 -93112698 + (TTAA)n Simple_repeat Simple_repeat 4 41 0 288 77 0 0 chr11 57671363 57671402 -93112151 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 35 0 0 chr11 57671648 57671677 -93111876 + AT_rich Low_complexity Low_complexity 1 29 0 204 185 12 49 chr11 57672580 57672661 -93110892 + (TTATA)n Simple_repeat Simple_repeat 5 82 0 190 140 53 0 chr11 57672664 57672721 -93110832 + (TATAA)n Simple_repeat Simple_repeat 2 61 0 752 313 116 41 chr11 57673905 57674432 -93109121 + L2 LINE L2 2510 3113 -200 1307 236 117 22 chr11 57674432 57674893 -93108660 + MLT1D LTR MaLR 1 505 0 752 313 116 41 chr11 57674893 57675109 -93108444 + L2 LINE L2 3113 3311 -2 2043 120 0 3 chr11 57675164 57675447 -93108106 + AluSg SINE Alu 5 286 -24 929 110 8 0 chr11 57675459 57675586 -93107967 + AluSq/x SINE Alu 1 128 -185 348 24 0 0 chr11 57675589 57675630 -93107923 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1975 207 27 88 chr11 57678258 57678916 -93104637 - LTR6A LTR ERV1 0 564 1 247 345 25 8 chr11 57679382 57679501 -93104052 - L2 LINE L2 -300 2972 2852 6396 72 8 23 chr11 57679525 57679829 -93103724 + L1PA7 LINE L1 5012 5319 -835 6498 112 14 10 chr11 57679829 57680791 -93102762 + LTR5 LTR ERVK 5 969 0 6396 72 8 23 chr11 57680791 57681438 -93102115 + L1PA7 LINE L1 5319 5946 -208 2539 97 95 5 chr11 57681438 57681849 -93101704 - LTR7 LTR ERV1 -2 448 1 6396 72 8 23 chr11 57681849 57682055 -93101498 + L1PA7 LINE L1 5946 6154 0 29 47 0 0 chr11 57682138 57682181 -93101372 + AT_rich Low_complexity Low_complexity 1 43 0 299 330 17 54 chr11 57682687 57683095 -93100458 + L1ME3 LINE L1 1309 1700 -4931 344 322 85 33 chr11 57683095 57683365 -93100188 + L1ME3 LINE L1 1921 2204 -4621 341 253 193 40 chr11 57683371 57683521 -93100032 + L2 LINE L2 1822 1994 -1320 731 284 111 9 chr11 57683819 57684242 -93099311 + L1ME3 LINE L1 2924 3389 -3255 265 272 144 35 chr11 57684291 57684695 -93098858 + L1ME3 LINE L1 3621 4068 -2576 369 313 171 8 chr11 57685063 57685458 -93098095 + L1ME3 LINE L1 6167 6631 -29 1055 269 55 34 chr11 57686069 57686597 -93096956 + L1ME1 LINE L1 1030 1568 -4974 780 201 29 33 chr11 57686905 57687149 -93096404 + L1ME1 LINE L1 4797 5039 -1605 1171 269 46 38 chr11 57687153 57687655 -93095898 + L1ME1 LINE L1 6134 6639 -25 23 0 0 0 chr11 57688077 57688100 -93095453 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 57688117 57688140 -93095413 + AT_rich Low_complexity Low_complexity 1 23 0 2535 218 20 7 chr11 57688910 57689460 -93094093 + MER41D LTR ERV1 1 557 0 1331 194 82 0 chr11 57689525 57689793 -93093760 - AluJo SINE Alu 0 312 23 3282 94 19 10 chr11 57689823 57690302 -93093251 - L1PA8 LINE L1 -2 6170 5688 3839 118 7 0 chr11 57692370 57692936 -93090617 - L1PA15 LINE L1 -3 6162 5593 196 373 100 0 chr11 57694286 57694396 -93089157 - MIR3 SINE MIR -13 195 75 27 0 0 0 chr11 57694541 57694568 -93088985 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr11 57695201 57695226 -93088327 + AT_rich Low_complexity Low_complexity 1 25 0 2004 135 6 6 chr11 57696373 57696685 -93086868 - AluSx SINE Alu 0 312 1 22 0 0 0 chr11 57696728 57696750 -93086803 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 57696874 57696895 -93086658 + AT_rich Low_complexity Low_complexity 1 21 0 21599 148 11 8 chr11 57697132 57701753 -93081800 - L1PA10 LINE L1 -4 6164 1531 183 156 0 0 chr11 57701903 57701935 -93081618 + (CA)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr11 57702150 57702178 -93081375 + AT_rich Low_complexity Low_complexity 1 28 0 988 199 5 0 chr11 57703244 57703435 -93080118 - L1PB4 LINE L1 0 6156 5965 246 254 0 0 chr11 57704390 57704449 -93079104 + (TA)n Simple_repeat Simple_repeat 2 60 0 220 267 0 0 chr11 57706058 57706103 -93077450 + (CA)n Simple_repeat Simple_repeat 2 46 0 267 93 0 0 chr11 57706723 57706766 -93076787 + (CA)n Simple_repeat Simple_repeat 2 44 0 204 345 58 0 chr11 57709061 57709148 -93074405 + L3 LINE CR1 1223 1314 -263 1921 127 3 52 chr11 57709945 57710269 -93073284 - AluSc SINE Alu -1 308 1 2341 262 77 42 chr11 57710723 57711754 -93071799 + L1MC4a LINE L1 6689 7755 -53 206 339 0 0 chr11 57712045 57712101 -93071452 + L2 LINE L2 3217 3272 0 1131 204 88 31 chr11 57712199 57712518 -93071035 - MER44D DNA MER2_type -2 607 1 1617 121 29 4 chr11 57712692 57712965 -93070588 + L1MA5A LINE L1 6014 6293 -4 21 0 0 0 chr11 57713954 57713975 -93069578 + AT_rich Low_complexity Low_complexity 1 21 0 31 58 0 0 chr11 57714522 57714574 -93068979 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr11 57715286 57715308 -93068245 + AT_rich Low_complexity Low_complexity 1 22 0 268 159 0 0 chr11 57716716 57716760 -93066793 - L1MA2 LINE L1 -385 5919 5876 957 115 0 19 chr11 57716761 57716778 -93066775 + L1MA1 LINE L1 6150 6166 -136 349 145 12 48 chr11 57716778 57716861 -93066692 - MADE1 DNA Mariner 0 80 1 957 115 0 19 chr11 57716861 57716999 -93066554 + L1MA1 LINE L1 6166 6302 0 1541 189 132 75 chr11 57718333 57718526 -93065027 + LTR48 LTR ERV1 2 183 -604 599 26 0 0 chr11 57718526 57718603 -93064950 + L1PA3 LINE L1 6079 6155 0 1541 189 132 75 chr11 57718603 57718918 -93064635 + LTR48 LTR ERV1 183 539 -248 397 134 12 37 chr11 57718962 57719044 -93064509 + MADE1 DNA Mariner 1 80 0 286 163 0 0 chr11 57719057 57719106 -93064447 + L1MA2 LINE L1 5871 5919 -385 503 186 110 41 chr11 57719554 57719699 -93063854 + LTR48 LTR ERV1 633 787 0 254 318 58 75 chr11 57721164 57721523 -93062030 + L2 LINE L2 2848 3200 -113 1813 155 4 7 chr11 57721696 57721974 -93061579 + AluSx SINE Alu 1 277 -35 34 24 0 0 chr11 57721974 57722015 -93061538 + AT_rich Low_complexity Low_complexity 1 41 0 1637 157 7 4 chr11 57722516 57722796 -93060757 + AluJo SINE Alu 18 298 -14 7286 35 5 1 chr11 57723310 57724683 -93058870 + L1PA5 LINE L1 4792 6167 0 22 0 0 0 chr11 57725332 57725354 -93058199 + AT_rich Low_complexity Low_complexity 1 22 0 73 70 0 0 chr11 57725451 57725594 -93057959 + AT_rich Low_complexity Low_complexity 1 143 0 23 0 0 0 chr11 57726026 57726049 -93057504 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 57726486 57726507 -93057046 + AT_rich Low_complexity Low_complexity 1 21 0 409 348 39 13 chr11 57726610 57726843 -93056710 + MIR SINE MIR 8 246 -16 1025 122 0 0 chr11 57727007 57727163 -93056390 - AluSg/x SINE Alu -3 307 152 277 323 41 46 chr11 57728556 57728751 -93054802 + MIR SINE MIR 5 198 -64 227 235 15 15 chr11 57729030 57729098 -93054455 + MER41B LTR ERV1 481 548 -87 26 0 0 0 chr11 57730423 57730449 -93053104 + AT_rich Low_complexity Low_complexity 1 26 0 270 194 15 30 chr11 57730687 57730754 -93052799 - MIR SINE MIR 0 262 197 641 345 91 26 chr11 57730828 57731593 -93051960 + L2 LINE L2 2410 3223 -90 915 250 45 7 chr11 57731676 57731964 -93051589 - L1MCc LINE L1 -6106 317 19 255 170 0 0 chr11 57732138 57732185 -93051368 + T-rich Low_complexity Low_complexity 1 47 0 1696 212 43 46 chr11 57732496 57732911 -93050642 - MER39 LTR ERV1 -293 414 1 252 293 32 80 chr11 57733127 57733315 -93050238 - L2 LINE L2 -3 3310 3132 1676 212 3 6 chr11 57734425 57734746 -93048807 + L1 LINE L1 316 635 -6930 377 229 27 101 chr11 57734782 57734910 -93048643 + L1 LINE L1 4438 4574 -2991 2121 63 37 0 chr11 57734910 57735180 -93048373 + AluY SINE Alu 1 280 -31 377 229 27 101 chr11 57735180 57735241 -93048312 + L1 LINE L1 4574 4606 -2959 2319 113 16 8 chr11 57735241 57735604 -93047949 + L1PA13 LINE L1 5798 6163 0 377 229 27 101 chr11 57735604 57735671 -93047882 + L1 LINE L1 4606 4676 -2889 * 5733 175 20 2 chr11 57735664 57736907 -93046646 + L1PA14 LINE L1 4216 5476 -685 1667 70 0 0 chr11 57736918 57737133 -93046420 - L1PA13 LINE L1 -20 6143 5929 386 169 0 0 chr11 57737135 57737200 -93046353 + L1PA13 LINE L1 5870 5934 -227 * 3964 167 22 13 chr11 57737167 57737878 -93045675 + L1PA15 LINE L1 5440 6157 -8 390 289 72 22 chr11 57737880 57738060 -93045493 + L1M4 LINE L1 2434 2622 -3524 585 284 18 36 chr11 57738135 57738357 -93045196 - MER20 DNA MER1_type -1 218 1 22 94 0 0 chr11 57739217 57739281 -93044272 + AT_rich Low_complexity Low_complexity 1 64 0 186 338 0 13 chr11 57739440 57739517 -93044036 + L2 LINE L2 2937 3012 -301 2123 123 0 0 chr11 57739549 57739851 -93043702 - AluY SINE Alu -9 302 1 412 295 44 82 chr11 57739892 57740258 -93043295 + L2 LINE L2 2849 3200 -113 52 47 0 28 chr11 57740409 57740426 -93043127 + AT_rich Low_complexity Low_complexity 1 17 -86 1825 144 4 7 chr11 57740426 57740704 -93042849 + AluSx SINE Alu 1 277 -35 189 0 0 0 chr11 57740704 57740725 -93042828 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 52 47 0 28 chr11 57740725 57740812 -93042741 + AT_rich Low_complexity Low_complexity 15 103 0 1429 171 31 10 chr11 57741244 57741536 -93042017 + AluJo SINE Alu 1 298 -14 34 24 0 0 chr11 57743530 57743571 -93039982 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr11 57743795 57743827 -93039726 + AT_rich Low_complexity Low_complexity 1 32 0 403 346 6 12 chr11 57744001 57744163 -93039390 + MIR SINE MIR 86 246 -16 714 167 5 91 chr11 57744319 57744505 -93039048 - AluSg/x SINE Alu 0 312 143 278 319 47 37 chr11 57745865 57746056 -93037497 + MIR SINE MIR 6 198 -64 362 176 0 0 chr11 57746335 57746403 -93037150 + MER41A LTR ERV1 400 467 -87 24 0 0 0 chr11 57747321 57747345 -93036208 + AT_rich Low_complexity Low_complexity 1 24 0 227 223 54 71 chr11 57747989 57748101 -93035452 - MIR SINE MIR 0 262 153 537 319 73 36 chr11 57748118 57748447 -93035106 + L2 LINE L2 2403 2743 -571 324 282 233 26 chr11 57748484 57748750 -93034803 + L2 LINE L2 2949 3269 -44 259 224 0 0 chr11 57748773 57748822 -93034731 - MIR SINE MIR -121 141 93 24 0 0 0 chr11 57749206 57749230 -93034323 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr11 57749288 57749313 -93034240 + AT_rich Low_complexity Low_complexity 1 25 0 303 292 59 51 chr11 57749624 57749860 -93033693 - L1MCa LINE L1 -2659 4282 4045 355 300 107 33 chr11 57750339 57750639 -93032914 - L1MCa LINE L1 -5037 1904 1583 625 236 69 46 chr11 57750849 57751065 -93032488 - L1MCa LINE L1 -6008 415 195 359 270 52 0 chr11 57751074 57751189 -93032364 - L1MCa LINE L1 -6284 139 19 187 167 0 37 chr11 57751353 57751407 -93032146 + T-rich Low_complexity Low_complexity 2 53 0 257 333 26 26 chr11 57751653 57751767 -93031786 + MIR SINE MIR 28 141 -121 5053 183 32 7 chr11 57751777 57752941 -93030612 + L1PA15 LINE L1 4289 5476 -692 1598 76 22 0 chr11 57752941 57753166 -93030387 - L1PA13 LINE L1 -5 6158 5929 429 117 0 78 chr11 57753166 57753231 -93030322 + L1PA13 LINE L1 5872 5932 -236 3950 162 13 6 chr11 57753231 57753918 -93029635 + L1PA15 LINE L1 5448 6157 -8 311 193 34 23 chr11 57753918 57753947 -93029606 + L1MA4A LINE L1 5936 5963 -339 531 302 14 36 chr11 57754166 57754388 -93029165 - MER20 DNA MER1_type -1 218 2 22 80 0 0 chr11 57754415 57754465 -93029088 + AT_rich Low_complexity Low_complexity 1 50 0 1089 176 37 4 chr11 57755729 57755973 -93027580 - L1 LINE L1 -1493 4653 4402 24 0 0 0 chr11 57756499 57756523 -93027030 + AT_rich Low_complexity Low_complexity 1 24 0 285 29 0 0 chr11 57756567 57756601 -93026952 + (TA)n Simple_repeat Simple_repeat 2 35 0 212 226 12 24 chr11 57757713 57757797 -93025756 + (TTA)n Simple_repeat Simple_repeat 2 84 0 306 349 30 12 chr11 57760365 57760534 -93023019 - L1MEd LINE L1 -4970 1149 978 2028 56 3 88 chr11 57760559 57760878 -93022675 + AluY SINE Alu 4 295 -16 376 333 0 0 chr11 57761894 57761990 -93021563 - L2 LINE L2 -260 3053 2958 2359 68 3 0 chr11 57762846 57763153 -93020400 + AluY SINE Alu 1 308 -3 373 329 68 55 chr11 57763220 57763600 -93019953 - L1MEc LINE L1 -4916 1480 1096 306 113 75 0 chr11 57763840 57763893 -93019660 - L1MA1 LINE L1 -165 6137 6081 710 186 18 91 chr11 57764135 57764356 -93019197 + L1M4c LINE L1 2279 2483 -3901 893 140 22 7 chr11 57765555 57765691 -93017862 + AluSq/x SINE Alu 1 138 -174 7473 56 8 5 chr11 57765690 57766811 -93016742 + SVA Other Other 432 1413 0 430 139 0 42 chr11 57766828 57766900 -93016653 + AluSp SINE Alu 121 189 -114 23 0 0 0 chr11 57767043 57767066 -93016487 + AT_rich Low_complexity Low_complexity 1 23 0 984 308 65 8 chr11 57767360 57767747 -93015806 + MER69 DNA AcHobo 2 410 -2116 2090 123 0 7 chr11 57767771 57768063 -93015490 + AluSq SINE Alu 6 295 -18 42 86 0 0 chr11 57768066 57768171 -93015382 + AT_rich Low_complexity Low_complexity 1 105 0 27 0 0 0 chr11 57768294 57768321 -93015232 + AT_rich Low_complexity Low_complexity 1 27 0 851 162 37 0 chr11 57768420 57768556 -93014997 + FRAM SINE Alu 5 145 -31 302 224 60 0 chr11 57768557 57768673 -93014880 + (TA)n Simple_repeat Simple_repeat 2 124 0 418 202 0 0 chr11 57769586 57769680 -93013873 - L1PB4 LINE L1 0 6156 6063 351 179 0 39 chr11 57769680 57769750 -93013803 - L1MA4 LINE L1 -433 5867 5799 3413 178 11 14 chr11 57769760 57770408 -93013145 - HSMAR2 DNA Mariner -13 1289 644 2949 168 42 37 chr11 57770414 57770514 -93013039 - HSMAR2 DNA Mariner -599 703 605 1949 141 0 32 chr11 57770514 57770826 -93012727 - AluSg SINE Alu -8 302 1 2949 168 42 37 chr11 57770826 57771131 -93012422 - HSMAR2 DNA Mariner -697 605 292 2181 105 7 0 chr11 57771131 57771426 -93012127 + AluSg SINE Alu 6 302 -8 2949 168 42 37 chr11 57771426 57771619 -93011934 - HSMAR2 DNA Mariner -1010 292 101 347 150 0 50 chr11 57771647 57771727 -93011826 - L1M4 LINE L1 -373 5801 5726 302 305 77 15 chr11 57771717 57771976 -93011577 - L1MEc LINE L1 -5353 1043 769 * 629 249 5 49 chr11 57772297 57772502 -93011051 + L1M4c LINE L1 2288 2483 -3901 21 0 0 0 chr11 57772527 57772548 -93011005 + AT_rich Low_complexity Low_complexity 1 21 0 1273 77 0 0 chr11 57772821 57772989 -93010564 + AluY SINE Alu 141 308 -3 344 245 7 91 chr11 57772989 57773132 -93010421 + L1M4c LINE L1 2335 2465 -3919 3266 226 84 20 chr11 57773228 57773372 -93010181 + L1PB1 LINE L1 2 135 -6728 3448 115 84 4 chr11 57773372 57773895 -93009658 - MER61E LTR ERV1 -4 565 1 3266 226 84 20 chr11 57773895 57774578 -93008975 + L1PB1 LINE L1 135 882 -5981 1478 181 10 17 chr11 57775038 57775331 -93008222 + L1PB1 LINE L1 865 1155 -5708 1837 184 53 28 chr11 57775331 57775871 -93007682 + MLT2A2 LTR ERVL 1 554 0 9391 166 40 39 chr11 57775874 57778167 -93005386 + L1PB1 LINE L1 1172 3457 -3405 1740 163 3 7 chr11 57778167 57778450 -93005103 + AluSx SINE Alu 6 287 -25 9391 166 40 39 chr11 57778450 57778818 -93004735 + L1PB1 LINE L1 3457 3823 -3039 4332 217 15 6 chr11 57778845 57779870 -93003683 + L1PB1 LINE L1 4929 5962 -900 3155 98 19 0 chr11 57779890 57780319 -93003234 - LTR3b LTR ERVK 0 437 1 3234 127 17 0 chr11 57780331 57780860 -93002693 + L1PB1 LINE L1 5970 6507 -360 189 0 0 0 chr11 57780867 57780888 -93002665 + (CA)n Simple_repeat Simple_repeat 2 22 0 201 175 0 0 chr11 57781069 57781109 -93002444 + (TA)n Simple_repeat Simple_repeat 1 40 0 2344 136 5 0 chr11 57781109 57781476 -93002077 + L1PB1 LINE L1 6498 6866 -1 24 67 0 0 chr11 57781542 57781587 -93001966 + AT_rich Low_complexity Low_complexity 1 45 0 1764 208 0 0 chr11 57783228 57783540 -93000013 + AluSx SINE Alu 1 312 0 207 0 0 0 chr11 57783713 57783736 -92999817 + (A)n Simple_repeat Simple_repeat 1 23 0 2284 211 49 44 chr11 57783841 57784392 -92999161 + MLT2B3 LTR ERVL 1 554 0 4731 166 40 0 chr11 57784431 57785684 -92997869 - L1PA15 LINE L1 0 6165 4878 6889 258 39 48 chr11 57785684 57786745 -92996808 + HERVL LTR ERVL 26 1094 -4560 396 59 88 0 chr11 57786745 57786813 -92996740 - L1PA3 LINE L1 -2841 3305 3232 16919 34 2 2 chr11 57786813 57789637 -92993916 + L1PA3 LINE L1 3333 6152 -3 6889 258 39 48 chr11 57789637 57790766 -92992787 + HERVL LTR ERVL 1092 2265 -3389 8647 256 14 13 chr11 57790772 57793281 -92990272 - L1PA15 LINE L1 -1673 4473 1962 3336 177 20 15 chr11 57793293 57794460 -92989093 + L1P4 LINE L1 4631 5804 -361 340 100 0 0 chr11 57794465 57794515 -92989038 - L1P4 LINE L1 -340 5821 5772 * 2873 198 15 9 chr11 57794509 57795192 -92988361 + L1MA9 LINE L1 5470 6252 -60 22 80 0 0 chr11 57795222 57795272 -92988281 + AT_rich Low_complexity Low_complexity 1 50 0 300 291 40 40 chr11 57795384 57795532 -92988021 + L1ME1 LINE L1 4806 4953 -1193 225 159 0 0 chr11 57795532 57795576 -92987977 + GA-rich Low_complexity Low_complexity 1 44 0 411 188 62 21 chr11 57795616 57795760 -92987793 + L1ME1 LINE L1 4992 5141 -1005 * 596 241 38 52 chr11 57795749 57795961 -92987592 - L1ME1 LINE L1 -130 6036 5828 1554 260 75 60 chr11 57796153 57797132 -92986421 + L1ME1 LINE L1 5144 6295 -39 5123 26 2 5 chr11 57797138 57797746 -92985807 + L1PA4 LINE L1 5549 6154 -1 2675 108 0 13 chr11 57798201 57798581 -92984972 - THE1C LTR MaLR 0 375 1 233 210 16 0 chr11 57798709 57798771 -92984782 + (CATA)n Simple_repeat Simple_repeat 2 64 0 373 385 26 0 chr11 57798833 57799025 -92984528 + MIR SINE MIR 49 245 -17 24 0 0 0 chr11 57799177 57799201 -92984352 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr11 57799704 57799739 -92983814 + AT_rich Low_complexity Low_complexity 1 35 0 309 100 0 0 chr11 57801961 57802011 -92981542 + (TC)n Simple_repeat Simple_repeat 2 51 0 234 0 0 0 chr11 57802011 57802037 -92981516 + (CA)n Simple_repeat Simple_repeat 1 26 0 40310 35 29 3 chr11 57803104 57808860 -92974693 - L1PA2 LINE L1 0 6155 244 21 0 0 0 chr11 57808970 57808991 -92974562 + AT_rich Low_complexity Low_complexity 1 21 0 194 0 39 0 chr11 57809160 57809186 -92974367 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1936 119 4 4 chr11 57809188 57809466 -92974087 - AluSg1 SINE Alu -31 278 1 261 307 108 38 chr11 57809600 57809812 -92973741 + L3 LINE CR1 625 851 -726 2092 60 18 21 chr11 57810287 57810569 -92972984 - AluY SINE Alu -30 281 1 30 27 0 0 chr11 57810582 57810619 -92972934 + AT_rich Low_complexity Low_complexity 1 37 0 250 195 8 4 chr11 57811276 57811327 -92972226 + MER57A LTR ERV1 296 336 -67 1570 162 24 81 chr11 57811453 57811651 -92971902 - L1MA4 LINE L1 -4 6296 6088 207 0 0 0 chr11 57811651 57811674 -92971879 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1705 59 117 0 chr11 57811674 57811896 -92971657 - AluY SINE Alu -29 282 35 1570 162 24 81 chr11 57811896 57812078 -92971475 - L1MA4 LINE L1 -210 6090 5937 2340 177 150 31 chr11 57812078 57814162 -92969391 - SATR1 Satellite Satellite -1 2330 1 1471 124 5 5 chr11 57814163 57814381 -92969172 - AluSq SINE Alu -95 218 1 22 0 0 0 chr11 57814702 57814724 -92968829 + AT_rich Low_complexity Low_complexity 1 22 0 30616 91 11 3 chr11 57815510 57819644 -92963909 - HERVL-A2 LTR ERVL -1486 4168 1 371 148 0 0 chr11 57819644 57819705 -92963848 - MLT2A2 LTR ERVL 0 520 460 222 236 0 0 chr11 57819731 57819786 -92963767 + (TATG)n Simple_repeat Simple_repeat 2 56 0 2835 118 17 0 chr11 57819788 57820194 -92963359 - MLT2A2 LTR ERVL -40 413 1 5932 167 35 2 chr11 57820194 57821261 -92962292 + Tigger1 DNA MER2_type 1052 2153 -265 26589 129 20 76 chr11 57821271 57826598 -92956955 - L1P LINE L1 -1107 5039 12 594 209 17 0 chr11 57826607 57826722 -92956831 + Tigger1 DNA MER2_type 2301 2417 -1 194 261 0 29 chr11 57826771 57826840 -92956713 - MIR SINE MIR -56 206 140 234 128 0 0 chr11 57827483 57827522 -92956031 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 680 55 248 0 chr11 57827528 57827637 -92955916 + MER85 DNA T2_type 4 139 0 344 273 27 18 chr11 57829519 57829629 -92953924 + MIR SINE MIR 7 117 -145 32 0 0 0 chr11 57829720 57829752 -92953801 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr11 57829879 57829900 -92953653 + (TG)n Simple_repeat Simple_repeat 1 21 0 22 70 0 0 chr11 57831109 57831152 -92952401 + AT_rich Low_complexity Low_complexity 1 43 0 194 133 0 22 chr11 57831221 57831266 -92952287 + (TTA)n Simple_repeat Simple_repeat 2 45 0 227 122 20 0 chr11 57831572 57831621 -92951932 + (CA)n Simple_repeat Simple_repeat 1 50 0 261 294 106 10 chr11 57832272 57832427 -92951126 + MIR SINE MIR 23 196 -66 287 347 65 29 chr11 57833178 57833348 -92950205 - ERVL LTR ERVL -3191 2573 2398 1846 250 84 26 chr11 57833396 57833857 -92949696 + MER77 LTR ERV1 1 503 -102 2061 205 59 28 chr11 57833857 57834315 -92949238 - MER70A LTR ERVL 0 472 1 1846 250 84 26 chr11 57834315 57834425 -92949128 + MER77 LTR ERV1 503 605 0 27 87 0 0 chr11 57834478 57834547 -92949006 + AT_rich Low_complexity Low_complexity 1 69 0 2085 117 0 10 chr11 57834745 57835043 -92948510 - AluSc SINE Alu -14 295 1 3110 65 0 0 chr11 57835503 57835904 -92947649 - L1PA5 LINE L1 -1 6153 5753 319 270 168 31 chr11 57836159 57836541 -92947012 - L1M4 LINE L1 -1300 4846 4413 2389 71 7 0 chr11 57836714 57837011 -92946542 - AluY SINE Alu -12 299 1 187 167 143 0 chr11 57838118 57838160 -92945393 - L2 LINE L2 -5 3308 3261 22 0 0 0 chr11 57838245 57838267 -92945286 + AT_rich Low_complexity Low_complexity 1 22 0 247 186 51 0 chr11 57838490 57838549 -92945004 + CT-rich Low_complexity Low_complexity 6 67 0 * 255 133 0 22 chr11 57838505 57838550 -92945003 + (TCC)n Simple_repeat Simple_repeat 2 45 0 900 135 6 11 chr11 57838550 57838728 -92944825 + (TTC)n Simple_repeat Simple_repeat 2 178 0 26 50 0 0 chr11 57840211 57840251 -92943302 + AT_rich Low_complexity Low_complexity 1 40 0 186 43 0 0 chr11 57841384 57841407 -92942146 + (GA)n Simple_repeat Simple_repeat 1 23 0 296 122 11 6 chr11 57841426 57841519 -92942034 + LTR54B LTR ERV1 1 146 -352 903 170 19 38 chr11 57841573 57841597 -92941956 + LTR54 LTR ERV1 303 326 -184 2076 116 3 3 chr11 57841597 57841899 -92941654 - AluSg SINE Alu -8 302 1 903 170 19 38 chr11 57841899 57842086 -92941467 + LTR54 LTR ERV1 326 510 0 1641 161 0 18 chr11 57842253 57842533 -92941020 - AluSx SINE Alu -37 275 1 22 56 0 0 chr11 57842724 57842760 -92940793 + AT_rich Low_complexity Low_complexity 1 36 0 1530 236 64 3 chr11 57845083 57845427 -92938126 + MLT1A1 LTR MaLR 1 365 0 22 56 0 0 chr11 57846011 57846047 -92937506 + AT_rich Low_complexity Low_complexity 1 36 0 182 296 32 64 chr11 57846374 57846499 -92937054 + L3 LINE CR1 637 757 -820 184 349 71 42 chr11 57846699 57846911 -92936642 + L3 LINE CR1 1016 1233 -344 9134 93 7 24 chr11 57847321 57848598 -92934955 + HERVL LTR ERVL 4238 5493 -161 971 0 18 0 chr11 57898636 57898750 -92884803 + (GAAA)n Simple_repeat Simple_repeat 1 116 0 2565 109 2 39 chr11 57898750 57899164 -92884389 + L1PA11 LINE L1 5776 6174 0 2697 227 37 26 chr11 57899164 57900756 -92882797 + L1PB4 LINE L1 4535 6132 -24 459 172 17 17 chr11 57900765 57900881 -92882672 + GA-rich Low_complexity Low_complexity 4 119 0 1361 251 52 0 chr11 57902044 57902430 -92881123 - L1ME1 LINE L1 -22 6144 5739 * 2757 154 62 20 chr11 57902429 57902980 -92880573 - L1MC1 LINE L1 -447 5886 5313 621 152 225 0 chr11 57902981 57903119 -92880434 - AluSg/x SINE Alu -15 294 126 491 208 54 13 chr11 57903135 57903284 -92880269 - L1MC1 LINE L1 -807 5339 5185 2145 101 0 14 chr11 57903555 57903852 -92879701 - AluSx SINE Alu -19 293 1 1322 190 28 2 chr11 57905074 57905419 -92878134 + MER44D DNA MER2_type 42 524 -81 1009 192 14 19 chr11 57905419 57905633 -92877920 - Tigger1 DNA MER2_type 0 2418 2206 1242 193 41 25 chr11 57905635 57905879 -92877674 + L1M2c LINE L1 71 318 -6531 1329 197 0 44 chr11 57905888 57906162 -92877391 - AluJo SINE Alu -21 291 30 987 194 15 20 chr11 57906217 57906413 -92877140 + L1M2c LINE L1 334 528 -6321 * 2546 249 58 24 chr11 57906408 57907064 -92876489 + L1M2c LINE L1 416 1093 -5756 2845 217 8 27 chr11 57907072 57907589 -92875964 + L1M2c LINE L1 2092 2592 -4257 2347 63 21 0 chr11 57907589 57907876 -92875677 + AluSc SINE Alu 2 294 -15 2845 217 8 27 chr11 57907876 57908094 -92875459 + L1M2c LINE L1 2592 2813 -4036 11412 154 24 48 chr11 57908096 57908284 -92875269 - Tigger1 DNA MER2_type -284 2134 1943 2173 121 3 0 chr11 57908284 57908582 -92874971 + AluY SINE Alu 1 299 -12 11412 154 24 48 chr11 57908582 57908629 -92874924 - Tigger1 DNA MER2_type -475 1943 1896 2172 147 46 0 chr11 57908629 57908977 -92874576 + THE1B LTR MaLR 1 364 0 11412 154 24 48 chr11 57908977 57909442 -92874111 - Tigger1 DNA MER2_type -522 1896 1421 2035 142 0 0 chr11 57909442 57909730 -92873823 + AluSg SINE Alu 1 288 -22 11412 154 24 48 chr11 57909730 57909753 -92873800 - Tigger1 DNA MER2_type -997 1421 1399 1802 147 6 38 chr11 57909753 57910066 -92873487 + AluSx SINE Alu 1 303 -9 11412 154 24 48 chr11 57910066 57910660 -92872893 - Tigger1 DNA MER2_type -1019 1399 792 2177 101 13 13 chr11 57910660 57910966 -92872587 - AluSc SINE Alu -3 306 1 11412 154 24 48 chr11 57910966 57911831 -92871722 - Tigger1 DNA MER2_type -1626 792 1 2287 67 0 0 chr11 57911850 57912161 -92871392 - AluY SINE Alu 0 311 1 420 206 0 0 chr11 57912170 57912238 -92871315 + MER44D DNA MER2_type 541 608 -1 344 269 0 6 chr11 57912243 57912403 -92871150 + (TA)n Simple_repeat Simple_repeat 1 159 0 25 0 0 0 chr11 57912607 57912632 -92870921 + AT_rich Low_complexity Low_complexity 1 25 0 852 261 26 42 chr11 57912886 57913192 -92870361 - L1M4 LINE L1 -1282 4864 4564 180 0 0 0 chr11 57913847 57913867 -92869686 + (T)n Simple_repeat Simple_repeat 1 20 0 3829 154 9 9 chr11 57914219 57915017 -92868536 - L1PA15 LINE L1 -259 6557 5762 10270 249 35 22 chr11 57915034 57915764 -92867789 - L1PA15 LINE L1 -1786 5011 4292 186 43 0 0 chr11 57915764 57915787 -92867766 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 10270 249 35 22 chr11 57915787 57918292 -92865261 - L1PA15 LINE L1 -2505 4292 1488 1860 163 7 0 chr11 57918292 57918587 -92864966 - AluSq SINE Alu -16 297 1 10270 249 35 22 chr11 57918587 57920093 -92863460 - L1PA15 LINE L1 -5309 1488 3 525 295 30 11 chr11 57920255 57920526 -92863027 - L1M4b LINE L1 -4962 1893 1618 407 149 43 29 chr11 57920601 57920703 -92862850 + MSTC LTR MaLR 343 428 0 317 175 16 0 chr11 57920709 57920772 -92862781 - L1M4 LINE L1 -5787 755 692 431 261 65 68 chr11 57920920 57921245 -92862308 - L1M4b LINE L1 -5257 1602 1279 405 164 0 0 chr11 57921884 57921957 -92861596 + Alu SINE Alu 237 309 -3 813 219 93 59 chr11 57922040 57922560 -92860993 + MER65A-int LTR ERV1 1720 2433 -4325 270 258 70 9 chr11 57923641 57923780 -92859773 + MER65A-int LTR ERV1 2927 3014 -1922 1592 196 95 96 chr11 57923805 57923882 -92859671 + MER65A-int LTR ERV1 4288 4364 -2233 2455 69 0 0 chr11 57923882 57924185 -92859368 - AluY SINE Alu -8 303 1 1592 196 95 96 chr11 57924185 57925016 -92858537 + MER65A-int LTR ERV1 4364 5700 -897 1508 288 45 0 chr11 57925104 57925486 -92858067 + MER65A-int LTR ERV1 3606 4004 -867 1559 270 30 19 chr11 57925524 57925994 -92857559 + MER65A-int LTR ERV1 4397 4871 0 2116 136 58 67 chr11 57925994 57926443 -92857110 + MER65A LTR ERV1 1 445 0 1743 229 70 7 chr11 57926767 57927195 -92856358 + MLT1D LTR MaLR 51 505 0 24 0 0 0 chr11 57927821 57927845 -92855708 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr11 57928113 57928135 -92855418 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr11 57928383 57928413 -92855140 + AT_rich Low_complexity Low_complexity 1 30 0 2367 48 34 3 chr11 57929749 57930041 -92853512 + AluY SINE Alu 1 301 -10 199 247 31 93 chr11 57930388 57930485 -92853068 + L2 LINE L2 633 723 -2591 23 0 0 0 chr11 57932171 57932194 -92851359 + AT_rich Low_complexity Low_complexity 1 23 0 982 147 0 19 chr11 57933895 57934052 -92849501 - L1PA12 LINE L1 -306 5862 5709 5991 154 9 15 chr11 57934197 57935846 -92847707 + L1PB2 LINE L1 4511 6149 -2 247 214 18 0 chr11 57935914 57935970 -92847583 - MIR SINE MIR -121 141 85 1084 182 55 12 chr11 57936076 57936329 -92847224 - L1MB1 LINE L1 -6 6162 5899 902 190 104 0 chr11 57936331 57936542 -92847011 - L1MB1 LINE L1 -299 5869 5637 301 136 0 173 chr11 57936550 57936631 -92846922 - LTR8A LTR ERV1 0 727 661 416 182 0 0 chr11 57936632 57936709 -92846844 + L1PB1 LINE L1 5890 5966 -185 2926 172 36 32 chr11 57936715 57937330 -92846223 - LTR8A LTR ERV1 -77 650 34 1031 198 55 0 chr11 57937345 57937547 -92846006 - L1MB1 LINE L1 -536 5632 5420 1364 208 57 21 chr11 57937551 57938352 -92845201 + L1MB1 LINE L1 4547 5427 -741 243 251 41 99 chr11 57939132 57939303 -92844250 + L3b LINE CR1 1272 1432 -151 24 32 0 0 chr11 57939881 57939912 -92843641 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr11 57940116 57940140 -92843413 + AT_rich Low_complexity Low_complexity 1 24 0 1283 146 104 4 chr11 57941459 57941699 -92841854 + MER21A LTR ERV1 1 264 -667 2818 186 51 9 chr11 57941705 57942237 -92841316 + MER21A LTR ERV1 377 930 -1 210 133 0 89 chr11 57942368 57942413 -92841140 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 210 175 25 0 chr11 57942757 57942797 -92840756 + (TG)n Simple_repeat Simple_repeat 2 42 0 1106 210 72 10 chr11 57943321 57943612 -92839941 - L1MB5 LINE L1 -8 6166 5858 2425 53 0 10 chr11 57943662 57944011 -92839542 - AluY SINE Alu 0 311 1 3835 191 42 38 chr11 57944032 57945418 -92838135 - L1MB1 LINE L1 -1 6167 4762 737 220 0 50 chr11 57945518 57945677 -92837876 - AluJo SINE Alu -150 162 12 1478 227 30 8 chr11 57945685 57946050 -92837503 - L1MB1 LINE L1 -1370 4776 4404 1953 199 60 50 chr11 57946077 57946949 -92836604 - L1MB5 LINE L1 -367 5807 4922 919 223 8 29 chr11 57947546 57947784 -92835769 + L1MB1 LINE L1 5841 6073 -95 42293 51 3 4 chr11 57947845 57954006 -92829547 - L1PA4 LINE L1 -3 6152 1 2775 111 26 5 chr11 57954066 57954490 -92829063 - L1PA7 LINE L1 -3223 2923 2491 * 13529 93 6 3 chr11 57954463 57956404 -92827149 + L1PA7 LINE L1 2920 4866 -1280 5343 94 17 11 chr11 57956407 57957187 -92826366 + L1PA7 LINE L1 5254 6037 -117 24 0 0 0 chr11 57957351 57957375 -92826178 + AT_rich Low_complexity Low_complexity 1 24 0 479 238 6 0 chr11 57957396 57957568 -92825985 + (TA)n Simple_repeat Simple_repeat 1 173 0 312 229 0 0 chr11 57958235 57958318 -92825235 + GA-rich Low_complexity Low_complexity 2 84 0 189 0 0 0 chr11 57958466 57958487 -92825066 + (TA)n Simple_repeat Simple_repeat 2 22 0 1048 275 95 98 chr11 57958729 57959690 -92823863 + L1MB7 LINE L1 222 1179 -5363 1656 258 67 41 chr11 57959697 57960326 -92823227 + L1MB7 LINE L1 1509 2153 -4493 21 71 0 0 chr11 57960326 57960368 -92823185 + AT_rich Low_complexity Low_complexity 1 42 0 267 75 25 0 chr11 57960563 57960603 -92822950 + L1MA6 LINE L1 6069 6109 -191 4541 143 42 11 chr11 57960606 57961441 -92822112 + Tigger3(Golem) DNA MER2_type 2168 3028 -1 1449 235 72 47 chr11 57961441 57961913 -92821640 + MER76 LTR ERV 205 688 0 670 203 57 61 chr11 57961915 57962161 -92821392 + L1M4 LINE L1 5088 5332 -814 * 2542 223 86 25 chr11 57962159 57964646 -92818907 + L1MB7 LINE L1 5003 6789 0 1194 265 108 68 chr11 57967057 57967464 -92816089 - L1ME3A LINE L1 -1 6169 5780 180 0 0 0 chr11 57967464 57967484 -92816069 + (TA)n Simple_repeat Simple_repeat 1 20 0 1194 265 108 68 chr11 57967484 57968362 -92815191 - L1ME3A LINE L1 -390 5780 4835 5057 224 64 57 chr11 57968436 57968829 -92814724 + MER65-int LTR ERV1 254 643 -4228 6810 63 0 3 chr11 57968829 57969906 -92813647 - L1PA5 LINE L1 -8 6146 5063 5057 224 64 57 chr11 57969906 57971301 -92812252 + MER65-int LTR ERV1 643 2055 -2816 30 0 0 0 chr11 57971413 57971443 -92812110 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr11 57971470 57971496 -92812057 + AT_rich Low_complexity Low_complexity 1 26 0 186 133 0 0 chr11 57971939 57971969 -92811584 + (GA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr11 57972686 57972708 -92810845 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr11 57972946 57972969 -92810584 + (TAAAA)n Simple_repeat Simple_repeat 5 27 0 24 32 0 0 chr11 57974981 57975012 -92808541 + AT_rich Low_complexity Low_complexity 1 31 0 223 360 18 26 chr11 57976671 57976785 -92806768 + L2 LINE L2 3197 3309 -4 657 295 79 12 chr11 57976816 57977057 -92806496 - MIR SINE MIR -2 260 4 476 304 105 3 chr11 57977217 57977536 -92806017 + L1PA2 LINE L1 5616 5930 -225 2813 195 61 12 chr11 57977259 57977378 -92806175 + L1MA6 LINE L1 5661 5773 -527 273 29 0 0 chr11 57977378 57977412 -92806141 + (CA)n Simple_repeat Simple_repeat 1 34 0 2813 195 61 12 chr11 57977412 57977536 -92806017 + L1MA6 LINE L1 5773 5889 -411 234 0 0 0 chr11 57977536 57977562 -92805991 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2813 195 61 12 chr11 57977562 57977923 -92805630 + L1MA6 LINE L1 5889 6296 -4 23 0 0 0 chr11 57977923 57977946 -92805607 + AT_rich Low_complexity Low_complexity 1 23 0 220 297 22 11 chr11 57978040 57978131 -92805422 + GA-rich Low_complexity Low_complexity 2 93 0 983 259 55 60 chr11 57978331 57978584 -92804969 + L1MCc LINE L1 20 272 -6151 3961 63 2 2 chr11 57978584 57979090 -92804463 + L1PA7 LINE L1 5634 6139 -15 983 259 55 60 chr11 57979090 57979238 -92804315 + L1MCc LINE L1 272 419 -6004 562 308 58 41 chr11 57979323 57979758 -92803795 + L1MCc LINE L1 1464 1905 -5036 1194 253 28 53 chr11 57979760 57980231 -92803322 - MLT2C2 LTR ERVL 0 464 6 1146 235 0 15 chr11 57980233 57980505 -92803048 - ERVL-C2 LTR ERVL -4 5760 5493 895 197 80 47 chr11 57980508 57980848 -92802705 - MSTD LTR MaLR -5 391 4 585 234 15 14 chr11 57980851 57981007 -92802546 - MSTD-int LTR MaLR 0 1735 1213 258 186 0 0 chr11 57980985 57981028 -92802525 + L1P5 LINE L1 4519 4561 -1585 * 6799 204 95 26 chr11 57981028 57982602 -92800951 - MER52A LTR ERV1 0 1755 3 1140 171 25 85 chr11 57982619 57982935 -92800618 + L1 LINE L1 4555 4851 -1295 460 167 39 0 chr11 57982932 57983034 -92800519 + L1 LINE L1 4746 4851 -1295 * 2964 158 16 6 chr11 57983031 57983882 -92799671 + L1P5 LINE L1 4746 5603 -551 1752 264 20 5 chr11 57983889 57984328 -92799225 - ERVL-C2 LTR ERVL -4395 1369 924 1203 208 25 17 chr11 57984329 57984570 -92798983 - AluJb SINE Alu -69 243 1 265 271 0 0 chr11 57984570 57984629 -92798924 - ERVL-C2 LTR ERVL -5536 118 60 513 284 77 50 chr11 57984632 57984893 -92798660 - MLT2C2 LTR ERVL -83 381 114 33 43 0 0 chr11 57985191 57985238 -92798315 + AT_rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr11 57986092 57986120 -92797433 + AT_rich Low_complexity Low_complexity 1 28 0 1359 213 28 0 chr11 57986755 57987046 -92796507 - AluJb SINE Alu -13 299 1 2110 251 36 23 chr11 57987413 57988367 -92795186 - L1 LINE L1 -3675 3173 2208 3036 133 39 0 chr11 57988383 57988903 -92794650 + L1P LINE L1 4793 5332 -814 1883 141 20 3 chr11 57988903 57989381 -92794172 + AluSx SINE Alu 1 483 0 405 102 0 0 chr11 57989381 57989440 -92794113 + (GGGA)n Simple_repeat Simple_repeat 1 59 0 1166 45 17 28 chr11 57989505 57989684 -92793869 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 342 67 0 0 chr11 57989684 57989729 -92793824 + (GGGA)n Simple_repeat Simple_repeat 3 47 0 488 136 11 0 chr11 57989775 57989863 -92793690 + GA-rich Low_complexity Low_complexity 2 90 0 198 0 0 0 chr11 57989865 57989887 -92793666 + (GGGA)n Simple_repeat Simple_repeat 1 22 0 2139 88 0 0 chr11 57990178 57990474 -92793079 - L1PA7 LINE L1 -14 6140 5845 31 0 0 0 chr11 57990501 57990532 -92793021 + AT_rich Low_complexity Low_complexity 1 31 0 1760 155 254 21 chr11 57992047 57992156 -92791397 - L1 LINE L1 -1219 4927 4845 7677 62 26 2 chr11 57992156 57992841 -92790712 + LTR13 LTR ERVK 1 719 -288 204 40 0 0 chr11 57992841 57992866 -92790687 + (TC)n Simple_repeat Simple_repeat 2 26 0 7677 62 26 2 chr11 57992866 57993163 -92790390 + LTR13 LTR ERVK 719 1007 0 1760 155 254 21 chr11 57993163 57993530 -92790023 - L1 LINE L1 -1301 4845 4340 1900 133 90 83 chr11 57993534 57993978 -92789575 + MER4B LTR ERV1 2 448 -162 15184 111 15 8 chr11 57993980 57996206 -92787347 + MER57A-int LTR ERV1 4905 7146 -391 779 122 24 8 chr11 57996206 57996329 -92787224 + LTR54B LTR ERV1 3 127 -371 1603 123 15 22 chr11 57996329 57996597 -92786956 + MER57A-int LTR ERV1 7272 7537 0 2032 195 20 0 chr11 57996597 57996992 -92786561 + MER57A LTR ERV1 1 403 0 573 199 17 3 chr11 57996992 57997139 -92786414 - L1 LINE L1 -1649 4497 4342 3032 137 88 21 chr11 57997144 57997712 -92785841 + MER4B LTR ERV1 1 606 -4 4579 133 24 20 chr11 57997736 57998503 -92785050 - MER4E LTR ERV1 -9 770 1 3531 192 33 9 chr11 57998503 57999147 -92784406 - L1 LINE L1 -1814 4332 3666 207 0 0 0 chr11 57999147 57999170 -92784383 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3531 192 33 9 chr11 57999170 57999292 -92784261 - L1 LINE L1 -2480 3666 3548 372 288 70 4 chr11 57999435 57999664 -92783889 + L1M4 LINE L1 3256 3499 -2647 2630 100 2 49 chr11 58000253 58000683 -92782870 + L1PB1 LINE L1 5740 6149 -2 590 373 63 30 chr11 58000711 58001215 -92782338 - L2 LINE L2 -339 2975 2455 429 146 49 0 chr11 58002024 58002106 -92781447 - L1MA3 LINE L1 -7 6298 6213 22 0 0 0 chr11 58002275 58002297 -92781256 + AT_rich Low_complexity Low_complexity 1 22 0 354 188 0 0 chr11 58003891 58003960 -92779593 - MER41A LTR ERV1 -86 468 400 28 95 0 0 chr11 58003992 58004076 -92779477 + AT_rich Low_complexity Low_complexity 1 84 0 1918 121 11 4 chr11 58004656 58004971 -92778582 - AluSq SINE Alu 0 317 1 476 366 37 0 chr11 58006319 58006565 -92776988 - MIR SINE MIR 0 262 8 300 219 172 57 chr11 58007665 58007700 -92775853 - L1ME4a LINE L1 -11 6110 6080 2437 71 0 0 chr11 58007700 58008010 -92775543 + AluY SINE Alu 1 310 -1 300 219 172 57 chr11 58008010 58008166 -92775387 - L1ME4a LINE L1 -41 6080 5897 1708 168 26 0 chr11 58009225 58009528 -92774025 - AluJo SINE Alu -1 311 1 37 62 0 0 chr11 58009990 58010055 -92773498 + AT_rich Low_complexity Low_complexity 1 65 0 1218 177 5 9 chr11 58010077 58010297 -92773256 - AluSg/x SINE Alu -10 302 84 22 35 0 0 chr11 58010952 58010981 -92772572 + AT_rich Low_complexity Low_complexity 1 29 0 903 121 6 25 chr11 58010985 58011123 -92772430 - L1MA1 LINE L1 0 6302 6166 403 137 96 0 chr11 58011123 58011158 -92772395 - MADE1 DNA Mariner 0 80 50 191 35 0 35 chr11 58011158 58011187 -92772366 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 403 137 96 0 chr11 58011187 58011224 -92772329 - MADE1 DNA Mariner -30 50 1 903 121 6 25 chr11 58011224 58011242 -92772311 - L1MA1 LINE L1 -136 6166 6149 311 91 0 0 chr11 58011242 58011286 -92772267 + L1MA2 LINE L1 5876 5919 -385 22 0 0 0 chr11 58014693 58014715 -92768838 + AT_rich Low_complexity Low_complexity 1 22 0 1473 153 37 0 chr11 58014845 58015113 -92768440 - L1MA5A LINE L1 -6 6291 6014 1018 217 96 19 chr11 58015301 58015614 -92767939 + MER44D DNA MER2_type 1 607 -2 204 367 13 0 chr11 58015709 58015788 -92767765 - L2 LINE L2 0 3313 3234 2603 245 67 46 chr11 58016054 58017077 -92766476 - L1MC4a LINE L1 -76 7732 6689 478 335 43 5 chr11 58017226 58017435 -92766118 + MIR SINE MIR 35 251 -11 2101 99 0 3 chr11 58017552 58017845 -92765708 - AluSc SINE Alu -17 292 1 939 153 13 0 chr11 58017856 58018013 -92765540 - L1PA15 LINE L1 -8 6157 5999 30 45 0 0 chr11 58018269 58018313 -92765240 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr11 58018328 58018351 -92765202 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr11 58018377 58018423 -92765130 + AT_rich Low_complexity Low_complexity 1 46 0 442 210 244 0 chr11 58018712 58018831 -92764722 + ERVL-B1 LTR ERVL 3329 3476 -2288 2143 214 70 9 chr11 58018835 58019294 -92764259 - Tigger7 DNA MER2_type -223 510 24 10799 196 34 26 chr11 58019312 58020633 -92762920 + ERVL-B1 LTR ERVL 3501 4850 -914 879 49 0 16 chr11 58020633 58020755 -92762798 - L1PA4 LINE L1 0 6155 6036 10799 196 34 26 chr11 58020755 58021678 -92761875 + ERVL-B1 LTR ERVL 4850 5764 0 2071 224 95 2 chr11 58021684 58022103 -92761450 + MLT2B1 LTR ERVL 19 484 -36 521 24 48 0 chr11 58022103 58022186 -92761367 + (TCTA)n Simple_repeat Simple_repeat 2 88 0 2071 224 95 2 chr11 58022186 58022218 -92761335 + MLT2B1 LTR ERVL 484 512 -8 22 0 0 0 chr11 58023509 58023531 -92760022 + AT_rich Low_complexity Low_complexity 1 22 0 35 41 0 0 chr11 58024171 58024220 -92759333 + AT_rich Low_complexity Low_complexity 1 49 0 240 167 42 0 chr11 58025080 58025152 -92758401 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 692 268 67 19 chr11 58025155 58025364 -92758189 - MER20 DNA MER1_type 0 219 1 213 374 30 0 chr11 58026586 58026685 -92756868 - L2 LINE L2 -8 3305 3204 229 235 0 0 chr11 58027569 58027620 -92755933 - L1M3b LINE L1 -5135 1146 1096 469 344 6 0 chr11 58027977 58028140 -92755413 - MIR SINE MIR -44 218 55 1614 187 0 11 chr11 58028166 58028450 -92755103 - AluJo SINE Alu -31 281 1 345 136 0 0 chr11 58028456 58028522 -92755031 + (TC)n Simple_repeat Simple_repeat 1 66 0 1803 159 3 3 chr11 58028523 58028812 -92754741 - AluSx SINE Alu -23 289 1 624 221 32 125 chr11 58028925 58029206 -92754347 + L1MA9 LINE L1 6034 6288 -24 1145 224 71 19 chr11 58029968 58030393 -92753160 + L1 LINE L1 3040 3486 -2660 1653 180 45 50 chr11 58030397 58030649 -92752904 + THE1C LTR MaLR 1 252 -123 2056 161 50 32 chr11 58030649 58031091 -92752462 + LTR7 LTR ERV1 1 450 0 1653 180 45 50 chr11 58031091 58031215 -92752338 + THE1C LTR MaLR 252 375 0 4705 143 2 59 chr11 58031217 58032096 -92751457 + THE1C-int LTR MaLR 3 831 -749 2748 148 49 13 chr11 58032091 58032563 -92750990 + THE1C-int LTR MaLR 1092 1580 0 * 1149 173 173 46 chr11 58032563 58032886 -92750667 + THE1B LTR MaLR 1 364 0 424 214 36 0 chr11 58032890 58033002 -92750551 + L1 LINE L1 3490 3605 -2541 782 214 46 17 chr11 58033009 58033166 -92750387 - MER44D DNA MER2_type 0 605 572 1964 183 39 17 chr11 58033166 58033522 -92750031 + THE1B LTR MaLR 1 364 0 5549 120 8 0 chr11 58033522 58034322 -92749231 + THE1B-int LTR MaLR 1 806 -774 38 51 0 0 chr11 58034559 58034618 -92748935 + AT_rich Low_complexity Low_complexity 1 59 0 23 33 0 0 chr11 58034949 58034979 -92748574 + AT_rich Low_complexity Low_complexity 1 30 0 2634 53 12 3 chr11 58035098 58035438 -92748115 - LTR14A LTR ERVK -1 343 1 697 68 94 34 chr11 58035441 58035558 -92747995 - HERVK14 LTR ERVK 0 5945 5822 364 177 0 16 chr11 58035558 58035620 -92747933 - MER41C LTR ERV1 -493 61 1 6027 61 32 43 chr11 58035620 58036475 -92747078 - HERVK14 LTR ERVK -186 5759 4915 * 13746 56 5 2 chr11 58036463 58038174 -92745379 - HERVK14 LTR ERVK -2403 3542 1828 358 296 168 60 chr11 58039198 58039650 -92743903 - L1M2 LINE L1 -5556 1293 793 2596 70 25 8 chr11 58039787 58040143 -92743410 - HERVK14 LTR ERVK -5583 362 1 2533 83 12 0 chr11 58040143 58040481 -92743072 - LTR14A LTR ERVK 0 344 3 22 99 0 0 chr11 58041471 58041542 -92742011 + AT_rich Low_complexity Low_complexity 1 71 0 23 54 0 0 chr11 58041559 58041596 -92741957 + AT_rich Low_complexity Low_complexity 1 37 0 915 319 76 10 chr11 58041613 58041996 -92741557 - MER69 DNA AcHobo -2116 410 3 403 231 0 10 chr11 58043730 58043834 -92739719 - L1M4c LINE L1 -3914 2470 2368 1047 364 19 35 chr11 58043854 58044477 -92739076 + L1PA16 LINE L1 788 1400 -6174 259 379 8 8 chr11 58044502 58044626 -92738927 + L1PA16 LINE L1 2163 2286 -5288 * 322 323 0 0 chr11 58044596 58044695 -92738858 + L1PA16 LINE L1 2084 2182 -5399 10505 235 77 20 chr11 58044927 58045546 -92738007 + L1PA16 LINE L1 2201 2783 -4821 2452 65 0 0 chr11 58045546 58045837 -92737716 - AluY SINE Alu -20 291 1 10505 235 77 20 chr11 58045837 58047414 -92736139 + L1PA16 LINE L1 2783 4268 -3336 190 0 32 32 chr11 58047414 58047445 -92736108 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 10505 235 77 20 chr11 58047445 58049698 -92733855 + L1PA16 LINE L1 4268 7001 -603 216 0 0 0 chr11 58049698 58049722 -92733831 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 10505 235 77 20 chr11 58049722 58050363 -92733190 + L1PA16 LINE L1 7001 7604 0 871 300 54 32 chr11 58050735 58051456 -92732097 + L1MEc LINE L1 753 1489 -4907 796 293 5 0 chr11 58052326 58052541 -92731012 + MIR SINE MIR 13 228 -34 1608 114 0 9 chr11 58054723 58054951 -92728602 + AluSg/x SINE Alu 85 310 0 1982 133 3 3 chr11 58055779 58056073 -92727480 - AluSx SINE Alu -18 294 1 21 0 0 0 chr11 58056177 58056198 -92727355 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr11 58056309 58056341 -92727212 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr11 58056456 58056485 -92727068 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr11 58056570 58056598 -92726955 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 58057168 58057190 -92726363 + AT_rich Low_complexity Low_complexity 1 22 0 556 288 36 5 chr11 58057668 58057887 -92725666 + L1ME2 LINE L1 4663 4888 -1258 1519 255 94 27 chr11 58057896 58058563 -92724990 + L1ME2 LINE L1 5266 5977 -187 316 152 15 0 chr11 58059288 58059354 -92724199 - L1MA9 LINE L1 0 6312 6246 873 118 7 15 chr11 58059355 58059370 -92724183 - AluJo SINE Alu -177 135 121 450 0 0 0 chr11 58059370 58059420 -92724133 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 873 118 7 15 chr11 58059420 58059539 -92724014 - AluJo SINE Alu -191 121 2 1228 174 21 0 chr11 58059541 58059777 -92723776 - L1MA9 LINE L1 -62 6250 6010 675 190 22 0 chr11 58059813 58059950 -92723603 - L1MA9 LINE L1 -268 6044 5905 1877 180 10 58 chr11 58060350 58060745 -92722808 + MLT1B LTR MaLR 1 376 -14 21 0 0 0 chr11 58061162 58061183 -92722370 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr11 58062517 58062548 -92721005 + AT_rich Low_complexity Low_complexity 1 31 0 2001 109 29 0 chr11 58062611 58062908 -92720645 + AluSx SINE Alu 3 307 0 305 102 0 68 chr11 58062910 58062969 -92720584 + Alu SINE Alu 257 308 0 21 57 0 0 chr11 58063600 58063635 -92719918 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr11 58065536 58065572 -92717981 + AT_rich Low_complexity Low_complexity 1 36 0 304 277 32 32 chr11 58065712 58065806 -92717747 + L2 LINE L2 2958 3051 -262 24 0 0 0 chr11 58066600 58066624 -92716929 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr11 58066669 58066702 -92716851 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr11 58069272 58069304 -92714249 + AT_rich Low_complexity Low_complexity 1 32 0 1819 169 7 0 chr11 58069488 58069790 -92713763 + AluSx SINE Alu 6 309 -3 1682 291 92 22 chr11 58069945 58070628 -92712925 + L1 LINE L1 7 737 -6293 2403 206 15 13 chr11 58070694 58071242 -92712311 + L1 LINE L1 4445 4993 -2113 1717 134 17 14 chr11 58071247 58071539 -92712014 - L1MA3 LINE L1 -220 6085 5793 1588 179 20 17 chr11 58071904 58072206 -92711347 - AluJo SINE Alu -9 303 1 3826 197 103 115 chr11 58072518 58072779 -92710774 + L1MC3 LINE L1 5992 6254 -1531 1594 160 52 8 chr11 58072779 58073047 -92710506 + AluSx SINE Alu 2 281 -31 270 56 0 0 chr11 58073047 58073083 -92710470 + (CA)n Simple_repeat Simple_repeat 1 36 0 3826 197 103 115 chr11 58073083 58073991 -92709562 + L1MC3 LINE L1 6253 7225 -560 293 235 35 35 chr11 58073991 58074076 -92709477 + MLT1F1 LTR MaLR 40 124 -443 3826 197 103 115 chr11 58074076 58074469 -92709084 + L1MC3 LINE L1 7225 7621 -164 398 258 16 31 chr11 58074720 58074848 -92708705 - L1MC4 LINE L1 -1248 6794 6669 1093 194 18 5 chr11 58074854 58075076 -92708477 + AluJo SINE Alu 5 229 -83 516 200 0 0 chr11 58075076 58075166 -92708387 + AluJo/FRAM SINE Alu 192 281 -31 251 28 28 0 chr11 58075181 58075217 -92708336 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 445 267 88 66 chr11 58075222 58075495 -92708058 - L1MC4 LINE L1 -1355 6687 6409 1827 154 32 0 chr11 58076668 58076953 -92706600 + AluSx SINE Alu 1 294 -18 435 342 80 5 chr11 58078278 58078477 -92705076 + MIR SINE MIR 28 241 -21 757 154 0 0 chr11 58078533 58078650 -92704903 + FLAM_C SINE Alu 1 117 -26 180 0 0 0 chr11 58078660 58078680 -92704873 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr11 58078950 58078978 -92704575 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr11 58079145 58079174 -92704379 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr11 58080236 58080265 -92703288 + AT_rich Low_complexity Low_complexity 1 29 0 399 325 49 20 chr11 58080757 58081003 -92702550 - MIR SINE MIR -2 260 8 267 31 0 0 chr11 58081345 58081377 -92702176 + (TC)n Simple_repeat Simple_repeat 1 32 0 189 291 146 0 chr11 58081481 58081536 -92702017 + MIR SINE MIR 37 99 -163 624 191 8 38 chr11 58082881 58083012 -92700541 + FLAM_C SINE Alu 1 127 -16 366 145 0 16 chr11 58084311 58084373 -92699180 - THE1C LTR MaLR 0 428 368 * 1283 170 30 34 chr11 58084358 58084623 -92698930 - THE1C LTR MaLR -109 266 3 9423 138 18 35 chr11 58084625 58086232 -92697321 - THE1C-int LTR MaLR 0 1580 1 1686 145 33 110 chr11 58086232 58086624 -92696929 - THE1C LTR MaLR 0 375 14 233 360 132 35 chr11 58086631 58086920 -92696633 + L2 LINE L2 575 891 -2423 403 409 71 15 chr11 58087652 58088190 -92695363 + L2 LINE L2 1783 2350 -964 207 0 0 0 chr11 58088287 58088310 -92695243 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1864 144 7 3 chr11 58089608 58089906 -92693647 + MER57B LTR ERV1 136 434 0 3908 147 7 54 chr11 58089906 58090613 -92692940 + MER57B-int LTR ERV1 1 674 -6863 747 95 0 0 chr11 58090613 58090718 -92692835 + AluSg SINE Alu 2 106 -204 5064 147 54 28 chr11 58090718 58091787 -92691766 + pTR5 LTR ERV1 743 2021 -417 367 179 0 36 chr11 58091791 58091875 -92691678 + LTR30 LTR ERV1 544 624 -98 1460 104 5 5 chr11 58091892 58092113 -92691440 + pTR5 LTR ERV1 172 392 -2046 1280 107 6 0 chr11 58092113 58092290 -92691263 + AluSg SINE Alu 103 280 -30 1936 134 51 13 chr11 58092324 58092637 -92690916 + LTR30-int LTR ERV1 289 613 -5333 427 186 101 81 chr11 58092645 58092892 -92690661 + HERVKC4 LTR ERVK 2704 2955 -2307 * 2606 165 50 77 chr11 58092671 58093357 -92690196 + MER57B-int LTR ERV1 3375 4041 -1905 * 11784 120 39 5 chr11 58093348 58095129 -92688424 + MER57B-int LTR ERV1 5307 7149 -388 658 165 26 0 chr11 58095129 58095244 -92688309 + LTR54B LTR ERV1 3 120 -378 925 130 37 1 chr11 58095244 58095482 -92688071 + MER57B-int LTR ERV1 7264 7537 0 2714 122 16 14 chr11 58095492 58095918 -92687635 + MER57B LTR ERV1 5 431 -3 791 339 63 32 chr11 58096262 58096820 -92686733 + ERVL LTR ERVL 3369 3943 -1821 292 67 155 0 chr11 58097197 58097248 -92686305 + L1PA8 LINE L1 4955 5014 -1132 5051 88 6 3 chr11 58097262 58097965 -92685588 + L1PA8 LINE L1 5338 6042 -130 26 0 0 0 chr11 58100435 58100461 -92683092 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 58101471 58101493 -92682060 + AT_rich Low_complexity Low_complexity 1 22 0 342 319 123 29 chr11 58103349 58103553 -92680000 - L2 LINE L2 -338 2976 2754 515 245 124 76 chr11 58103715 58103736 -92679817 - L1MC4a LINE L1 -1805 6003 5984 1867 153 3 7 chr11 58103736 58104031 -92679522 - AluSx SINE Alu -5 307 14 515 245 124 76 chr11 58104031 58104429 -92679124 - L1MC4a LINE L1 -1824 5984 5564 1074 92 0 0 chr11 58104432 58104608 -92678945 - AluY SINE Alu 0 319 144 216 0 0 0 chr11 58105083 58105107 -92678446 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 2199 67 0 3 chr11 58105107 58105389 -92678164 - AluY SINE Alu -30 281 1 1347 277 94 66 chr11 58105391 58106174 -92677379 - L1ME3A LINE L1 -62 6108 5295 8091 98 15 2 chr11 58106195 58108126 -92675427 - L1PA7 LINE L1 -11 6143 4201 3911 108 2 5 chr11 58108126 58108701 -92674852 + L1P LINE L1 3441 4013 -2133 2158 103 0 3 chr11 58109042 58109332 -92674221 + AluSc SINE Alu 1 289 -20 372 279 66 0 chr11 58110270 58110392 -92673161 - L1ME4a LINE L1 -59 6062 5933 25 31 0 0 chr11 58110931 58110963 -92672590 + AT_rich Low_complexity Low_complexity 1 32 0 601 291 9 55 chr11 58110985 58111205 -92672348 - MER63A DNA MER1_type 0 210 1 4886 173 18 60 chr11 58113371 58114526 -92669027 - L1MA3 LINE L1 -2 6303 5194 954 197 167 0 chr11 58114972 58115249 -92668304 + L1MC4 LINE L1 6241 6358 -1 3923 138 29 12 chr11 58115255 58116216 -92667337 + L1PB3 LINE L1 4900 5877 -277 1585 60 5 5 chr11 58116318 58116519 -92667034 + AluY SINE Alu 99 299 -12 1807 176 46 9 chr11 58116521 58116973 -92666580 + L1PA13 LINE L1 5665 6163 0 336 351 169 38 chr11 58117152 58118449 -92665104 + L2 LINE L2 1771 3257 -15 200 234 0 21 chr11 58118624 58118671 -92664882 - MIR3 SINE MIR -43 165 120 555 252 85 6 chr11 58118797 58118970 -92664583 - MIR SINE MIR -12 250 58 339 281 104 90 chr11 58119040 58119375 -92664178 + LTR33 LTR ERVL 76 415 -106 23 54 0 0 chr11 58120056 58120093 -92663460 + AT_rich Low_complexity Low_complexity 1 37 0 266 277 36 48 chr11 58121925 58122008 -92661545 + L2 LINE L2 2919 3000 -313 458 282 49 21 chr11 58122009 58122151 -92661402 + L2 LINE L2 3153 3298 -15 208 303 30 0 chr11 58123508 58123574 -92659979 - L2 LINE L2 -213 3059 2992 190 270 56 22 chr11 58123939 58124028 -92659525 + L2 LINE L2 3217 3308 -5 28 29 0 0 chr11 58124729 58124764 -92658789 + AT_rich Low_complexity Low_complexity 1 35 0 209 314 0 14 chr11 58126168 58126238 -92657315 - MER5B DNA MER1_type -8 170 102 575 307 25 5 chr11 58126531 58126733 -92656820 + Charlie2 DNA MER1_type 74 279 -2583 302 227 35 35 chr11 58126944 58127085 -92656468 + Charlie2 DNA MER1_type 2694 2834 -28 195 42 0 0 chr11 58128124 58128148 -92655405 + (GA)n Simple_repeat Simple_repeat 2 25 0 203 61 30 0 chr11 58128212 58128245 -92655308 + (TTA)n Simple_repeat Simple_repeat 2 35 0 801 87 0 0 chr11 58128251 58128354 -92655199 - AluSp/q SINE Alu -30 283 181 483 321 57 5 chr11 58128939 58129132 -92654421 + MIR SINE MIR 54 256 -6 22 0 0 0 chr11 58129835 58129857 -92653696 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr11 58130086 58130115 -92653438 + AT_rich Low_complexity Low_complexity 1 29 0 421 290 158 44 chr11 58130126 58130586 -92652967 - MLT1G1 LTR MaLR 0 555 16 209 310 28 14 chr11 58131491 58131562 -92651991 - MIR3 SINE MIR -5 203 132 25 0 0 0 chr11 58132575 58132600 -92650953 + AT_rich Low_complexity Low_complexity 1 25 0 9160 95 15 3 chr11 58133614 58134882 -92648671 + HSMAR1 DNA Mariner 2 1284 -3 21 36 0 0 chr11 58135014 58135042 -92648511 + AT_rich Low_complexity Low_complexity 1 28 0 2558 174 4 10 chr11 58135194 58135682 -92647871 - MER31A LTR ERV1 0 485 1 222 91 0 0 chr11 58135684 58135717 -92647836 + (TATG)n Simple_repeat Simple_repeat 2 34 0 422 321 89 9 chr11 58135884 58136108 -92647445 + MIR SINE MIR 11 252 -10 238 322 158 0 chr11 58136206 58136352 -92647201 - MIR SINE MIR -82 180 12 25 0 0 0 chr11 58137803 58137828 -92645725 + AT_rich Low_complexity Low_complexity 1 25 0 2160 221 30 47 chr11 58138041 58138685 -92644868 - LTR27 LTR ERV1 -2 634 2 25 0 0 0 chr11 58138701 58138726 -92644827 + AT_rich Low_complexity Low_complexity 1 25 0 415 344 70 37 chr11 58138867 58139137 -92644416 + L1M4 LINE L1 3914 4192 -1954 279 225 0 0 chr11 58139306 58139377 -92644176 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 225 256 64 32 chr11 58139532 58139657 -92643896 + L1M4 LINE L1 4521 4649 -1497 206 250 0 66 chr11 58139657 58139733 -92643820 + (TA)n Simple_repeat Simple_repeat 2 72 0 359 349 66 12 chr11 58140037 58140203 -92643350 + L2 LINE L2 3117 3291 -22 25 75 0 0 chr11 58140317 58140370 -92643183 + AT_rich Low_complexity Low_complexity 1 53 0 432 146 10 21 chr11 58140468 58140564 -92642989 + GA-rich Low_complexity Low_complexity 4 98 0 2012 141 0 0 chr11 58141104 58141402 -92642151 + AluSx SINE Alu 1 298 -14 525 315 65 0 chr11 58141523 58141723 -92641830 - MIR SINE MIR -40 222 10 1127 315 110 29 chr11 58141734 58142456 -92641097 - L2 LINE L2 -308 3005 2232 2146 207 71 45 chr11 58142486 58142920 -92640633 - MER6A DNA MER2_type -265 600 179 3375 118 0 6 chr11 58142920 58143421 -92640132 - L1PA14 LINE L1 -2 6159 5662 2146 207 71 45 chr11 58143421 58143469 -92640084 - MER6A DNA MER2_type -686 179 134 563 0 15 0 chr11 58143469 58143536 -92640017 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 2146 207 71 45 chr11 58143536 58143912 -92639641 - MER6A DNA MER2_type -731 134 2 275 0 29 0 chr11 58143914 58143949 -92639604 + (TG)n Simple_repeat Simple_repeat 2 37 0 883 286 55 46 chr11 58143953 58144387 -92639166 - L2 LINE L2 -1116 2198 1761 231 191 0 0 chr11 58145464 58145506 -92638047 + (TG)n Simple_repeat Simple_repeat 2 43 0 23 54 0 0 chr11 58145908 58145945 -92637608 + AT_rich Low_complexity Low_complexity 1 37 0 1315 237 93 93 chr11 58146265 58147207 -92636346 - LTR1B LTR ERV1 0 1020 1 888 231 101 12 chr11 58147379 58147623 -92635930 - MLT1C LTR MaLR -1 466 201 429 240 39 0 chr11 58147623 58147727 -92635826 + MSTC LTR MaLR 1 108 -320 * 1162 125 0 0 chr11 58147726 58147894 -92635659 - MER4E LTR ERV1 -6 760 593 23 54 0 0 chr11 58148018 58148055 -92635498 + AT_rich Low_complexity Low_complexity 1 37 0 1793 120 18 35 chr11 58148809 58149123 -92634430 + AluSc SINE Alu 3 311 0 330 328 46 0 chr11 58149377 58149508 -92634045 - L2 LINE L2 -1 3312 3176 376 302 132 13 chr11 58149888 58150047 -92633506 + MIR SINE MIR 15 192 -70 213 235 0 0 chr11 58150081 58150132 -92633421 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1794 163 17 0 chr11 58151080 58151381 -92632172 - AluSx SINE Alu -6 306 1 234 220 0 0 chr11 58152535 58152594 -92630959 + (TA)n Simple_repeat Simple_repeat 1 59 0 29 60 0 0 chr11 58153659 58153709 -92629844 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr11 58155738 58155759 -92627794 + AT_rich Low_complexity Low_complexity 1 21 0 1485 138 0 0 chr11 58155813 58156052 -92627501 - L1PA13 LINE L1 0 6163 5925 5261 15 0 0 chr11 58156053 58156653 -92626900 - L1PA3 LINE L1 -1 6154 5555 2382 111 32 24 chr11 58156653 58157032 -92626521 - L1PA13 LINE L1 -231 5937 5556 1111 141 11 5 chr11 58157035 58157226 -92626327 + L1PA13 LINE L1 5362 5553 -610 1487 164 4 8 chr11 58158082 58158338 -92625215 + L1PA15 LINE L1 5903 6157 -8 333 308 28 49 chr11 58158565 58158708 -92624845 - MIR SINE MIR -116 146 7 672 242 108 40 chr11 58158902 58159396 -92624157 + LTR28 LTR ERV1 4 1284 -137 5411 239 35 69 chr11 58159514 58161909 -92621644 - L1P4 LINE L1 -502 5664 3364 261 196 0 0 chr11 58161907 58161958 -92621595 + L1P4 LINE L1 3309 3359 -2787 * 562 214 87 35 chr11 58162590 58162763 -92620790 + MLT1B LTR MaLR 4 185 -205 27 0 0 0 chr11 58162764 58162791 -92620762 + AT_rich Low_complexity Low_complexity 1 27 0 506 179 14 18 chr11 58162796 58162920 -92620633 - MSTC LTR MaLR -13 388 262 5247 201 25 22 chr11 58162920 58164655 -92618898 + L1PA16 LINE L1 3935 5671 -495 700 201 82 138 chr11 58164746 58165203 -92618350 - LTR28 LTR ERV1 -523 1232 2 2645 163 6 48 chr11 58165203 58165718 -92617835 + L1PA16 LINE L1 5666 6158 -8 652 286 12 0 chr11 58165723 58165891 -92617662 + MLT1E1 LTR MaLR 444 613 -41 518 101 13 0 chr11 58169070 58169149 -92614404 + MADE1 DNA Mariner 1 80 0 409 305 8 0 chr11 58169403 58169521 -92614032 - MIR SINE MIR -92 170 52 334 304 93 19 chr11 58170774 58170988 -92612565 + MIR SINE MIR 33 262 0 1995 137 3 0 chr11 58171104 58171404 -92612149 + AluSx SINE Alu 3 303 -9 1130 148 82 55 chr11 58171417 58171673 -92611880 - L1PA15 LINE L1 0 6165 5903 333 0 0 0 chr11 58171939 58171946 -92611607 + (TG)n Simple_repeat Simple_repeat 1 44 0 333 0 0 0 chr11 58171946 58171983 -92611570 + (TG)n Simple_repeat Simple_repeat 1 37 0 1066 145 32 0 chr11 58172788 58172974 -92610579 - L1PA13 LINE L1 -610 5553 5362 3599 135 32 3 chr11 58172974 58173568 -92609985 + L1PA13 LINE L1 5548 6163 0 30 45 0 0 chr11 58173622 58173666 -92609887 + AT_rich Low_complexity Low_complexity 1 44 0 203 255 0 0 chr11 58175763 58175814 -92607739 - L2 LINE L2 -3 3269 3219 246 207 0 0 chr11 58176776 58176834 -92606719 + (TA)n Simple_repeat Simple_repeat 1 58 0 380 250 230 7 chr11 58178951 58179103 -92604450 - MIR SINE MIR -62 200 15 350 325 42 0 chr11 58179480 58179600 -92603953 + L2 LINE L2 3183 3307 -6 26 50 0 0 chr11 58180639 58180679 -92602874 + AT_rich Low_complexity Low_complexity 1 40 0 1057 160 6 0 chr11 58180779 58180948 -92602605 + MER4E LTR ERV1 593 762 -4 461 240 39 0 chr11 58180945 58181049 -92602504 - MSTC LTR MaLR -320 108 1 * 732 240 132 21 chr11 58181049 58181288 -92602265 + MLT1C LTR MaLR 201 466 -1 1327 204 13 45 chr11 58181909 58182218 -92601335 - AluJb SINE Alu -12 300 2 422 172 73 150 chr11 58182299 58182448 -92601105 + MER21B LTR ERV1 629 752 -111 225 0 0 0 chr11 58182457 58182482 -92601071 + (CA)n Simple_repeat Simple_repeat 2 26 0 225 0 0 0 chr11 58183126 58183151 -92600402 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 764 214 26 0 chr11 58183154 58183308 -92600245 - FAM SINE Alu -17 158 1 1647 173 0 23 chr11 58183448 58183749 -92599804 + AluJb SINE Alu 1 294 -18 1652 136 66 4 chr11 58184181 58184438 -92599115 - AluSc SINE Alu -30 279 7 322 326 0 0 chr11 58185967 58186059 -92597494 - MIR3 SINE MIR -23 185 94 1839 159 0 20 chr11 58186756 58187057 -92596496 + AluSx SINE Alu 1 295 -17 538 111 0 30 chr11 58187057 58187156 -92596397 + (GGAA)n Simple_repeat Simple_repeat 1 96 0 612 273 75 39 chr11 58187168 58187527 -92596026 + L1M4 LINE L1 4476 4847 -1299 29 47 0 0 chr11 58187768 58187811 -92595742 + AT_rich Low_complexity Low_complexity 1 43 0 284 329 0 0 chr11 58188180 58188256 -92595297 - L2 LINE L2 -12 3301 3226 21 0 0 0 chr11 58190345 58190366 -92593187 + AT_rich Low_complexity Low_complexity 1 21 0 282 301 187 32 chr11 58190732 58190855 -92592698 - MIR SINE MIR -73 189 48 194 400 57 19 chr11 58191702 58191807 -92591746 - L2 LINE L2 -47 3225 3117 2889 196 40 56 chr11 58191872 58192606 -92590947 + MER72 LTR ERV1 1 722 0 2000 155 0 0 chr11 58192668 58192958 -92590595 - AluSq SINE Alu -23 290 1 4216 161 11 0 chr11 58193024 58193732 -92589821 + LTR62 LTR ERVK 2 717 -2 280 286 114 18 chr11 58193897 58194117 -92589436 + HAL1 LINE L1 1857 2097 -410 446 275 109 37 chr11 58194160 58194535 -92589018 + HAL1 LINE L1 2083 2484 -23 22 0 0 0 chr11 58194558 58194580 -92588973 + AT_rich Low_complexity Low_complexity 1 22 0 659 323 83 31 chr11 58194723 58195107 -92588446 - MLT1I LTR MaLR -1 408 5 275 143 0 0 chr11 58195172 58195214 -92588339 + Alu SINE Alu 1 42 -260 1470 118 13 9 chr11 58195214 58195442 -92588111 + AluSg/x SINE Alu 79 307 -3 223 333 0 18 chr11 58196692 58196806 -92586747 + T-rich Low_complexity Low_complexity 3 114 0 1210 88 0 0 chr11 58197299 58197458 -92586095 + AluY SINE Alu 138 296 -15 280 287 37 9 chr11 58197653 58197761 -92585792 + LTR67 LTR ERVL 427 537 -20 298 236 14 0 chr11 58198025 58198097 -92585456 - L1ME2 LINE L1 -17 6147 6075 254 322 44 0 chr11 58198270 58198360 -92585193 - MIR SINE MIR -5 257 164 336 360 68 28 chr11 58198440 58198690 -92584863 + MIR SINE MIR 3 262 0 1644 177 35 53 chr11 58199379 58199775 -92583778 + MLT1B LTR MaLR 1 389 -1 1514 267 64 56 chr11 58199866 58200650 -92582903 - L1ME3A LINE L1 -4 6166 5392 3370 70 17 4 chr11 58201619 58202079 -92581474 + SVA Other Other 2 467 -919 1623 174 0 24 chr11 58202079 58202372 -92581181 - AluJb SINE Alu -26 286 1 501 227 16 39 chr11 58202513 58202641 -92580912 + FRAM SINE Alu 1 125 -51 4300 52 4 0 chr11 58202742 58203281 -92580272 + SVA Other Other 860 1400 0 222 171 0 0 chr11 58203413 58203454 -92580099 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 359 316 57 92 chr11 58203609 58203742 -92579811 - L1MEd LINE L1 -5448 671 535 2069 124 3 0 chr11 58203742 58204048 -92579505 - AluY SINE Alu -4 307 1 359 316 57 92 chr11 58204048 58204303 -92579250 - L1MEd LINE L1 -5584 535 297 1507 194 0 48 chr11 58204819 58205128 -92578425 + AluJb SINE Alu 1 294 -18 211 248 8 51 chr11 58206640 58206757 -92576796 + CT-rich Low_complexity Low_complexity 5 116 0 267 296 37 9 chr11 58207434 58207542 -92576011 + LTR67 LTR ERVL 427 537 -20 2579 187 29 62 chr11 58207737 58208453 -92575100 - LTR5 LTR ERVK 0 969 277 1387 197 10 86 chr11 58208457 58208864 -92574689 - LTR5 LTR ERVK -593 376 1 290 208 28 14 chr11 58208946 58209018 -92574535 - L1ME2 LINE L1 -17 6147 6075 268 300 44 0 chr11 58209191 58209281 -92574272 - MIR SINE MIR -5 257 164 296 392 60 20 chr11 58209361 58209611 -92573942 + MIR SINE MIR 3 262 0 1732 172 35 51 chr11 58210298 58210693 -92572860 + MLT1B LTR MaLR 1 389 -1 1415 264 85 83 chr11 58210786 58210860 -92572693 - L1ME3A LINE L1 -5 6165 6093 2300 81 3 0 chr11 58210860 58211156 -92572397 - AluY SINE Alu -14 297 1 1415 264 85 83 chr11 58211156 58211891 -92571662 - L1ME3A LINE L1 -77 6093 5354 8118 97 15 2 chr11 58211961 58213892 -92569661 - L1PA7 LINE L1 -11 6143 4201 5106 107 5 4 chr11 58213892 58214640 -92568913 + L1PA7 LINE L1 3441 4189 -1957 198 209 0 0 chr11 58215567 58215610 -92567943 + (CATA)n Simple_repeat Simple_repeat 1 43 0 455 345 68 26 chr11 58215823 58216130 -92567423 - L1MEd LINE L1 -5503 616 297 1344 214 0 60 chr11 58216685 58216984 -92566569 + AluJb SINE Alu 1 281 -31 213 39 0 0 chr11 58216989 58217015 -92566538 + (TTG)n Simple_repeat Simple_repeat 2 27 0 27 29 0 0 chr11 58219230 58219264 -92564289 + AT_rich Low_complexity Low_complexity 1 34 0 529 321 112 24 chr11 58219350 58219680 -92563873 + MLT1J LTR MaLR 153 511 0 25 51 0 0 chr11 58220011 58220050 -92563503 + AT_rich Low_complexity Low_complexity 1 39 0 268 258 16 0 chr11 58220433 58220495 -92563058 + (CATA)n Simple_repeat Simple_repeat 2 64 0 308 308 121 22 chr11 58220795 58220977 -92562576 + MIR SINE MIR 57 256 -6 187 311 83 15 chr11 58221838 58221970 -92561583 - MIR SINE MIR -51 211 71 243 0 0 0 chr11 58222223 58222250 -92561303 + (T)n Simple_repeat Simple_repeat 1 27 0 386 255 20 0 chr11 58222441 58222539 -92561014 - MLT-int LTR MaLR -1008 727 628 2609 127 92 27 chr11 58222548 58223061 -92560492 - LTR10A LTR ERV1 -63 546 1 251 130 43 0 chr11 58223076 58223122 -92560431 - LTR10B LTR ERV1 -499 48 1 2273 241 41 10 chr11 58223122 58223733 -92559820 - MSTD-int LTR MaLR -1105 630 1 1208 258 57 44 chr11 58223733 58224117 -92559436 - MSTD LTR MaLR -2 394 6 195 387 0 19 chr11 58224273 58224379 -92559174 + L2 LINE L2 2947 3050 -222 3942 218 66 9 chr11 58224468 58225969 -92557584 - ERVL-B1 LTR ERVL -3532 2232 584 1480 260 103 7 chr11 58225987 58226403 -92557150 - ERVL-B1 LTR ERVL -5307 457 2 2508 188 13 47 chr11 58226404 58226493 -92557060 - MLT2B1 LTR ERVL 0 520 430 204 40 0 0 chr11 58226493 58226518 -92557035 + (CA)n Simple_repeat Simple_repeat 2 26 0 2508 188 13 47 chr11 58226518 58226964 -92556589 - MLT2B1 LTR ERVL -90 430 3 315 68 51 0 chr11 58227897 58227956 -92555597 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 518 256 51 45 chr11 58228185 58228341 -92555212 - MIR SINE MIR -14 248 92 240 331 177 11 chr11 58228625 58228806 -92554747 + MIR SINE MIR 26 236 -26 259 268 0 0 chr11 58232742 58232798 -92550755 + CT-rich Low_complexity Low_complexity 1 56 0 1623 172 52 15 chr11 58233027 58233352 -92550201 - MER1B DNA MER1_type 0 337 1 21 0 0 0 chr11 58233962 58233983 -92549570 + AT_rich Low_complexity Low_complexity 1 21 0 277 294 79 72 chr11 58234031 58234296 -92549257 - MER102a DNA MER1_type -1 329 63 223 369 69 15 chr11 58234673 58234803 -92548750 - L2 LINE L2 -201 3071 2935 320 230 29 65 chr11 58235725 58235864 -92547689 + MER103 DNA DNA 13 146 -20 679 50 30 0 chr11 58236355 58236454 -92547099 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 1167 181 113 53 chr11 58238121 58238387 -92545166 + AluJo SINE Alu 1 316 0 216 59 0 29 chr11 58238387 58238421 -92545132 + (TAAAA)n Simple_repeat Simple_repeat 5 45 0 237 341 23 0 chr11 58239006 58239094 -92544459 + MIR3 SINE MIR 112 201 -7 2225 144 23 30 chr11 58239290 58239727 -92543826 - L1MA5A LINE L1 -1 6296 5863 1327 148 17 4 chr11 58241172 58241408 -92542145 - L1PA13 LINE L1 -1 6162 5924 9984 197 23 7 chr11 58241409 58242241 -92541312 - L1PA13 LINE L1 -785 5361 4544 3007 94 8 86 chr11 58242241 58242732 -92540821 - MLT2A2 LTR ERVL 0 453 1 9984 197 23 7 chr11 58242732 58243995 -92539558 - L1PA13 LINE L1 -1602 4544 3232 519 294 82 47 chr11 58244070 58244413 -92539140 + L2 LINE L2 2955 3309 -4 28 48 0 0 chr11 58244469 58244511 -92539042 + AT_rich Low_complexity Low_complexity 1 42 0 2139 129 7 0 chr11 58245172 58245474 -92538079 + AluSq SINE Alu 1 304 -9 450 273 78 43 chr11 58245482 58245764 -92537789 + L1M4 LINE L1 4069 4360 -1786 1517 219 3 3 chr11 58246143 58246430 -92537123 + AluJo SINE Alu 3 289 -23 316 325 153 12 chr11 58247173 58247336 -92536217 - MER5A DNA MER1_type 0 189 4 389 20 20 0 chr11 58248700 58248750 -92534803 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 213 338 149 26 chr11 58249162 58249316 -92534237 - MER5A DNA MER1_type -1 188 16 242 302 0 0 chr11 58249730 58249793 -92533760 - MIR SINE MIR -124 138 76 306 299 216 25 chr11 58250287 58250528 -92533025 - L2 LINE L2 -4 3309 3023 1902 143 14 0 chr11 58250528 58250821 -92532732 + AluSx SINE Alu 1 297 -15 1548 151 136 57 chr11 58250879 58251338 -92532215 + MER4B LTR ERV1 1 610 0 210 37 0 0 chr11 58251421 58251448 -92532105 + (CA)n Simple_repeat Simple_repeat 1 27 0 475 271 35 65 chr11 58252056 58252090 -92531463 - MER45A DNA AcHobo -1405 176 143 3466 182 22 52 chr11 58252090 58252899 -92530654 + LTR1 LTR ERV1 1 785 0 475 271 35 65 chr11 58252899 58253034 -92530519 - MER45A DNA AcHobo -1438 143 12 663 231 44 22 chr11 58253472 58253697 -92529856 - L1MA9 LINE L1 -40 6272 6043 1570 224 19 14 chr11 58253697 58254068 -92529485 + L1MA9 LINE L1 5660 6032 -280 208 143 0 0 chr11 58254146 58254181 -92529372 + (T)n Simple_repeat Simple_repeat 1 35 0 228 35 0 0 chr11 58254219 58254248 -92529305 + (T)n Simple_repeat Simple_repeat 1 29 0 333 0 0 0 chr11 58254413 58254450 -92529103 + (T)n Simple_repeat Simple_repeat 1 37 0 41566 39 27 2 chr11 58254482 58260484 -92523069 - L1PA3 LINE L1 0 6155 2 189 294 167 39 chr11 58261409 58261511 -92522042 + MIR3 SINE MIR 49 163 -45 333 290 152 7 chr11 58261648 58261786 -92521767 + MIR SINE MIR 96 253 -9 310 355 99 42 chr11 58262382 58262808 -92520745 + L1M1 LINE L1 1226 1675 -5821 2001 131 14 10 chr11 58263170 58263467 -92520086 + AluSx SINE Alu 1 298 -14 708 280 38 30 chr11 58263477 58263841 -92519712 + L1M1 LINE L1 2318 2682 -4804 1211 212 116 3 chr11 58264374 58264667 -92518886 - MLT1D LTR MaLR 0 505 180 1587 101 9 13 chr11 58264684 58264912 -92518641 - AluSq SINE Alu -17 296 70 405 354 124 6 chr11 58265384 58265562 -92517991 + MIR SINE MIR 8 206 -56 742 298 106 13 chr11 58265750 58266052 -92517501 - L2 LINE L2 -4 3309 2980 2748 240 38 57 chr11 58267541 58267733 -92515820 + L1M1 LINE L1 2574 2768 -4797 1968 159 105 5 chr11 58267733 58268122 -92515431 + MSTA LTR MaLR 1 428 0 8592 167 13 37 chr11 58268124 58269741 -92513812 + MSTA-int LTR MaLR 3 1580 0 2096 147 96 10 chr11 58269741 58270135 -92513418 + MSTA LTR MaLR 1 428 0 2748 240 38 57 chr11 58270135 58271094 -92512459 + L1M1 LINE L1 2767 3714 -3851 * 3227 251 43 8 chr11 58271069 58272198 -92511355 + L1PA15-16 LINE L1 2888 4056 -2793 1571 207 18 25 chr11 58272182 58272574 -92510979 + L1M1 LINE L1 5665 6053 -796 * 558 147 35 56 chr11 58272596 58272739 -92510814 - L1PA13 LINE L1 -1 6162 6023 5823 139 10 34 chr11 58272751 58273589 -92509964 - L1PA14 LINE L1 -9 6152 5346 2085 128 0 0 chr11 58273589 58273903 -92509650 - AluSx SINE Alu 0 315 2 5823 139 10 34 chr11 58273903 58274441 -92509112 - L1PA14 LINE L1 -815 5346 4797 5682 189 27 11 chr11 58274446 58275139 -92508414 - L1PA16 LINE L1 -138 6028 5348 1564 90 0 0 chr11 58275139 58275350 -92508203 - L1PA7 LINE L1 -7 6147 5937 5682 189 27 11 chr11 58275350 58276741 -92506812 - L1M1 LINE L1 -818 6051 4620 988 229 4 19 chr11 58276743 58277001 -92506552 + L1M1 LINE L1 6055 6308 -695 307 303 9 55 chr11 58277097 58277206 -92506347 - MIR SINE MIR -126 136 33 1151 312 50 73 chr11 58277219 58278247 -92505306 - L1M3b LINE L1 -5267 1014 11 287 200 67 13 chr11 58278963 58279038 -92504515 + MADE1 DNA Mariner 1 79 -1 24 0 0 0 chr11 58279449 58279473 -92504080 + AT_rich Low_complexity Low_complexity 1 24 0 24 85 0 0 chr11 58280040 58280099 -92503454 + AT_rich Low_complexity Low_complexity 1 59 0 374 315 34 34 chr11 58280580 58280758 -92502795 + L1ME4a LINE L1 5490 5667 -454 323 326 117 25 chr11 58281001 58281283 -92502270 + L1ME4a LINE L1 5811 6118 -3 323 291 35 24 chr11 58281570 58281711 -92501842 + MIR SINE MIR 19 167 -62 32 57 0 0 chr11 58281858 58281911 -92501642 + AT_rich Low_complexity Low_complexity 1 53 0 2488 181 40 60 chr11 58282894 58283462 -92500091 + MER41D LTR ERV1 1 557 0 2061 120 7 19 chr11 58283846 58284181 -92499372 - AluSq SINE Alu 0 313 2 213 139 28 0 chr11 58285589 58285625 -92497928 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 2257 57 4 0 chr11 58286029 58286334 -92497219 + AluY SINE Alu 1 306 0 236 299 223 25 chr11 58286500 58286697 -92496856 - L2 LINE L2 -61 3252 3017 4245 60 2 29 chr11 58288116 58288739 -92494814 + L1PA4 LINE L1 5585 6191 0 439 266 65 88 chr11 58289483 58289694 -92493859 + L1ME2 LINE L1 4127 4341 -1805 1357 179 123 4 chr11 58289694 58289945 -92493608 + AluSx SINE Alu 1 281 -31 195 42 0 0 chr11 58289948 58289972 -92493581 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 439 266 65 88 chr11 58289972 58290290 -92493263 + L1ME2 LINE L1 4343 4648 -1498 957 256 83 72 chr11 58290598 58291320 -92492233 + L1ME2 LINE L1 4735 5486 -678 2223 205 49 23 chr11 58291320 58291846 -92491707 + MER67A LTR ERV1 1 540 -3 957 256 83 72 chr11 58291846 58292202 -92491351 + L1ME2 LINE L1 5486 5837 -327 212 0 36 0 chr11 58292212 58292240 -92491313 + (TCTA)n Simple_repeat Simple_repeat 1 29 0 945 234 35 9 chr11 58292257 58292488 -92491065 + L1M4 LINE L1 18 254 -6288 375 253 21 0 chr11 58292486 58292581 -92490972 + L1ME2 LINE L1 6057 6153 -11 * 222 217 22 0 chr11 58292893 58292939 -92490614 + GA-rich Low_complexity Low_complexity 2 48 0 202 128 21 43 chr11 58293888 58293935 -92489618 + (CATA)n Simple_repeat Simple_repeat 1 46 0 222 267 0 0 chr11 58294099 58294159 -92489394 + GA-rich Low_complexity Low_complexity 1 60 0 27144 29 0 0 chr11 58294458 58298487 -92485066 - L1PA3 LINE L1 -5 6150 2122 28919 47 37 2 chr11 58298587 58302277 -92481276 - L1P LINE L1 -2315 3831 13 2096 121 0 0 chr11 58302680 58302993 -92480560 - AluSg SINE Alu 0 313 1 1710 195 0 0 chr11 58302995 58303292 -92480261 - AluJb SINE Alu -15 297 1 1407 198 8 11 chr11 58303687 58303955 -92479598 - AluJb SINE Alu -44 268 2 400 291 96 59 chr11 58304021 58304499 -92479054 + L1ME3 LINE L1 5267 5777 -385 1793 108 19 0 chr11 58304499 58304757 -92478796 + AluSq SINE Alu 35 297 -16 400 291 96 59 chr11 58304757 58304921 -92478632 + L1ME3 LINE L1 5777 5933 -229 21 36 0 0 chr11 58305234 58305262 -92478291 + AT_rich Low_complexity Low_complexity 1 28 0 239 276 48 0 chr11 58305298 58305403 -92478150 + A-rich Low_complexity Low_complexity 2 111 0 2626 33 7 0 chr11 58305526 58305825 -92477728 + AluY SINE Alu 1 301 -10 219 231 19 0 chr11 58305901 58305953 -92477600 + (CA)n Simple_repeat Simple_repeat 2 54 0 386 256 47 17 chr11 58306543 58306715 -92476838 + (CTATA)n Simple_repeat Simple_repeat 3 179 0 271 181 66 173 chr11 58308630 58308856 -92474697 + MER106A DNA MER1_type 31 232 -4 2469 118 6 0 chr11 58309376 58309740 -92473813 - L1PB1 LINE L1 -1 6150 5785 262 146 0 21 chr11 58309777 58309825 -92473728 + L1P5 LINE L1 5749 5795 -356 2010 124 0 7 chr11 58309952 58310235 -92473318 - AluSq SINE Alu -32 281 1 576 265 103 18 chr11 58310905 58311128 -92472425 + MIR SINE MIR 8 249 -13 231 328 50 42 chr11 58311185 58311304 -92472249 + L2 LINE L2 3189 3308 -5 354 340 53 64 chr11 58312027 58312494 -92471059 + LTR33 LTR ERVL 23 484 -37 209 197 30 15 chr11 58313510 58313576 -92469977 + (TA)n Simple_repeat Simple_repeat 1 67 0 241 316 40 37 chr11 58313718 58313829 -92469724 + MIR SINE MIR 77 148 -60 2291 137 25 0 chr11 58314838 58315197 -92468356 + HERVL LTR ERVL 917 1284 -4370 * 6315 118 11 12 chr11 58315192 58315482 -92468071 + HERVL LTR ERVL 4360 4649 -1005 2094 134 0 10 chr11 58315482 58315787 -92467766 + AluSx SINE Alu 1 302 -10 6315 118 11 12 chr11 58315787 58316435 -92467118 + HERVL LTR ERVL 4649 5297 -357 1193 290 21 16 chr11 58316435 58316821 -92466732 - L1M3b LINE L1 -5883 398 11 342 264 115 60 chr11 58317438 58317620 -92465933 - L1ME LINE L1 -420 5701 5510 27 49 0 0 chr11 58317950 58317991 -92465562 + AT_rich Low_complexity Low_complexity 1 41 0 387 348 0 33 chr11 58319092 58319273 -92464280 + L1ME LINE L1 5497 5671 -450 383 261 76 33 chr11 58320080 58320234 -92463319 + MIR SINE MIR 19 188 -74 27 0 0 0 chr11 58320387 58320414 -92463139 + AT_rich Low_complexity Low_complexity 1 27 0 369 0 0 0 chr11 58324373 58324414 -92459139 + (CA)n Simple_repeat Simple_repeat 2 42 0 2174 119 0 3 chr11 58325523 58325817 -92457736 + AluSx SINE Alu 1 293 -19 213 39 0 0 chr11 58325970 58325996 -92457557 + (TATG)n Simple_repeat Simple_repeat 2 27 0 3822 116 0 7 chr11 58326850 58327420 -92456133 - L1PA15 LINE L1 -2 6163 5598 3796 202 24 49 chr11 58327914 58328908 -92454645 - LTR5 LTR ERVK 0 969 1 1443 89 0 0 chr11 58330407 58330618 -92452935 + L1PA7 LINE L1 5947 6157 0 3686 152 44 21 chr11 58330619 58331344 -92452209 + L1MB1 LINE L1 5383 6124 -44 1290 107 126 73 chr11 58331941 58332202 -92451351 + LTR66 LTR ERVL 336 610 0 1474 104 0 24 chr11 58332202 58332414 -92451139 + HERVL66 LTR ERVL 1 207 -4122 35 41 0 0 chr11 58333700 58333749 -92449804 + AT_rich Low_complexity Low_complexity 1 49 0 1969 115 3 30 chr11 58335044 58335349 -92448204 + AluSq SINE Alu 15 311 -2 682 48 0 0 chr11 58336410 58336494 -92447059 + L1PA10 LINE L1 6072 6155 -13 205 172 31 16 chr11 58336499 58336563 -92446990 + (TA)n Simple_repeat Simple_repeat 1 65 0 297 0 0 0 chr11 58336564 58336597 -92446956 + (TG)n Simple_repeat Simple_repeat 2 34 0 364 256 12 0 chr11 58336603 58336685 -92446868 - MER5B DNA MER1_type -95 83 1 250 315 65 9 chr11 58336901 58337009 -92446544 + L2 LINE L2 2588 2701 -613 846 316 198 20 chr11 58337098 58337798 -92445755 - L2 LINE L2 -2 3311 2484 814 118 15 0 chr11 58340366 58340502 -92443051 - L1PA14 LINE L1 -1 6160 6023 197 159 23 0 chr11 58340804 58340848 -92442705 + (CA)n Simple_repeat Simple_repeat 2 46 0 250 293 12 24 chr11 58342684 58342766 -92440787 + MIR3 SINE MIR 128 208 0 189 0 0 0 chr11 58344070 58344091 -92439462 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 243 0 0 0 chr11 58344090 58344117 -92439436 + (GA)n Simple_repeat Simple_repeat 1 27 0 1983 279 73 50 chr11 58344155 58345050 -92438503 + L2 LINE L2 1711 2625 -689 2524 49 0 0 chr11 58345050 58345355 -92438198 - AluY SINE Alu -6 305 1 192 179 0 0 chr11 58345596 58345635 -92437918 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 249 268 0 0 chr11 58346049 58346105 -92437448 + (TATG)n Simple_repeat Simple_repeat 4 59 0 265 328 30 30 chr11 58346871 58347005 -92436548 - L2 LINE L2 -1 3312 3179 337 362 68 35 chr11 58347031 58347481 -92436072 + L2 LINE L2 2772 3252 -61 405 136 12 37 chr11 58347586 58347667 -92435886 + MADE1 DNA Mariner 2 80 0 928 338 124 23 chr11 58347848 58348417 -92435136 - L2 LINE L2 -1009 2305 1620 600 72 21 31 chr11 58348417 58348514 -92435039 + L1PA5 LINE L1 6056 6151 -3 928 338 124 23 chr11 58348514 58348798 -92434755 - L2 LINE L2 -1694 1620 1366 437 358 28 9 chr11 58348808 58349026 -92434527 - L2 LINE L2 -2127 1187 966 2167 93 0 0 chr11 58349261 58349576 -92433977 - AluSg SINE Alu 0 315 1 2805 0 0 0 chr11 58350074 58350378 -92433175 - AluYa5 SINE Alu -7 304 1 728 321 94 25 chr11 58350380 58350775 -92432778 + LTR16A LTR ERVL 20 441 -9 23 0 0 0 chr11 58352337 58352360 -92431193 + AT_rich Low_complexity Low_complexity 1 23 0 1405 197 7 42 chr11 58352507 58352993 -92430560 + AluJo SINE Alu 1 475 0 2588 50 0 0 chr11 58353678 58353980 -92429573 + AluY SINE Alu 1 302 -9 348 320 120 13 chr11 58354669 58354819 -92428734 - MIR SINE MIR -10 252 87 27 0 0 65 chr11 58355307 58355353 -92428200 + AT_rich Low_complexity Low_complexity 1 43 0 437 318 152 14 chr11 58356292 58356503 -92427050 + MIR SINE MIR 11 250 -12 2074 146 3 0 chr11 58356560 58356869 -92426684 + AluSx SINE Alu 1 310 -2 219 325 146 32 chr11 58358018 58358141 -92425412 - MIR SINE MIR -116 146 10 1395 255 117 60 chr11 58358433 58359151 -92424402 + MER20B DNA MER1_type 16 783 0 2557 70 34 8 chr11 58359320 58359676 -92423877 + L1PA8 LINE L1 5801 6165 -7 640 323 81 65 chr11 58359729 58360774 -92422779 + L1MC4a LINE L1 4260 5321 -825 626 222 11 58 chr11 58360874 58361063 -92422490 - LTR41 LTR ERVL -10 763 584 261 125 14 28 chr11 58361373 58361445 -92422108 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 801 296 132 11 chr11 58361474 58361913 -92421640 + L1MC4a LINE L1 5482 5973 -1835 2290 68 0 3 chr11 58362233 58362527 -92421026 + AluY SINE Alu 1 293 -18 26 0 0 0 chr11 58362527 58362553 -92421000 + AT_rich Low_complexity Low_complexity 1 26 0 1898 250 52 34 chr11 58363966 58364605 -92418948 + L1ME2 LINE L1 5399 6048 -116 652 305 102 0 chr11 58364794 58365165 -92418388 - L1M4 LINE L1 -1198 4948 4540 719 228 5 5 chr11 58365265 58365449 -92418104 + L1M4b LINE L1 787 970 -5889 733 248 16 9 chr11 58365449 58365753 -92417800 + MLT1A2 LTR MaLR 1 373 -1 293 259 0 47 chr11 58365756 58365841 -92417712 + L1M4b LINE L1 970 1050 -5809 36 82 0 0 chr11 58365906 58365991 -92417562 + AT_rich Low_complexity Low_complexity 1 85 0 599 201 14 22 chr11 58366006 58366145 -92417408 + L1M4b LINE L1 1035 1172 -5687 25 0 0 0 chr11 58366796 58366821 -92416732 + AT_rich Low_complexity Low_complexity 1 25 0 5431 185 108 19 chr11 58366944 58368331 -92415222 - L1 LINE L1 -1035 5111 3601 4164 180 50 22 chr11 58368344 58369239 -92414314 + L1MA7 LINE L1 5367 6286 -5 617 172 0 16 chr11 58369251 58369379 -92414174 + A-rich Low_complexity Low_complexity 4 129 0 2712 107 79 0 chr11 58369379 58369808 -92413745 - L1P LINE L1 -1055 5091 4629 3533 68 0 0 chr11 58369814 58370267 -92413286 + L1PA7 LINE L1 5695 6147 -7 310 147 29 0 chr11 58370290 58370358 -92413195 + GA-rich Low_complexity Low_complexity 2 71 0 21 0 0 0 chr11 58370988 58371009 -92412544 + AT_rich Low_complexity Low_complexity 1 21 0 481 349 39 26 chr11 58372045 58372277 -92411276 - MIR SINE MIR -26 236 2 22 0 0 0 chr11 58373562 58373584 -92409969 + AT_rich Low_complexity Low_complexity 1 22 0 641 294 9 23 chr11 58373726 58373944 -92409609 - MIR SINE MIR -1 261 47 202 273 15 0 chr11 58374637 58374703 -92408850 + (TGAA)n Simple_repeat Simple_repeat 1 67 0 255 333 38 23 chr11 58375000 58375132 -92408421 - MIR SINE MIR 0 262 129 2249 244 59 11 chr11 58376764 58376917 -92406636 + LTR65 LTR ERV1 3 147 -522 234 0 0 0 chr11 58376917 58376943 -92406610 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2249 244 59 11 chr11 58376943 58377416 -92406137 + LTR65 LTR ERV1 147 659 -10 49 32 0 0 chr11 58378090 58378153 -92405400 + AT_rich Low_complexity Low_complexity 1 63 0 556 102 20 69 chr11 58378837 58378980 -92404573 - L1MA1 LINE L1 -368 5937 5800 1843 91 0 0 chr11 58378980 58379232 -92404321 + L1MA1 LINE L1 6050 6302 0 28 29 0 0 chr11 58379232 58379267 -92404286 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr11 58379970 58379992 -92403561 + AT_rich Low_complexity Low_complexity 1 22 0 303 333 0 0 chr11 58382050 58382122 -92401431 + L3 LINE CR1 1424 1495 -82 236 154 19 0 chr11 58382122 58382174 -92401379 + (TA)n Simple_repeat Simple_repeat 2 54 0 1152 261 39 39 chr11 58382651 58383530 -92400023 + L1ME1 LINE L1 5195 6161 -5 225 65 0 0 chr11 58383940 58383971 -92399582 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2031 118 0 11 chr11 58383973 58384260 -92399293 - AluSx SINE Alu -28 284 1 239 388 51 10 chr11 58384556 58384752 -92398801 + MIR SINE MIR 55 258 -4 264 363 50 22 chr11 58385180 58385362 -92398191 + MIR3 SINE MIR 21 207 -1 838 192 0 0 chr11 58386053 58386225 -92397328 + L1MA10 LINE L1 6161 6332 -2 1796 102 70 0 chr11 58386397 58386681 -92396872 + L1PA13 LINE L1 5855 6158 -5 24106 42 1 0 chr11 58386880 58390674 -92392879 + L1PA4 LINE L1 2345 6155 0 1587 195 3 11 chr11 58390693 58390975 -92392578 + AluJb SINE Alu 1 280 -32 838 180 0 92 chr11 58391406 58391623 -92391930 + L1 LINE L1 5080 5276 -870 6321 217 20 10 chr11 58391629 58393561 -92389992 + L1M1 LINE L1 16 2643 -4922 1661 160 133 27 chr11 58393561 58393899 -92389654 + MSTA LTR MaLR 55 428 0 7008 185 22 53 chr11 58393899 58396187 -92387366 + L1M1 LINE L1 3143 5358 -2207 7308 44 0 1 chr11 58396187 58397295 -92386258 + L1PA5 LINE L1 5036 6142 -12 594 293 118 40 chr11 58397532 58397931 -92385622 - L2 LINE L2 -2 3311 2882 463 287 38 49 chr11 58397980 58398349 -92385204 + L1M1 LINE L1 5530 5894 -1671 574 149 37 0 chr11 58398356 58398463 -92385090 - L1PB1 LINE L1 -796 5350 5240 * 5376 87 14 38 chr11 58398458 58399300 -92384253 + L1PB1 LINE L1 5358 6179 0 1342 220 53 3 chr11 58399313 58399672 -92383881 + L1M1 LINE L1 5896 6272 -1293 289 216 7 176 chr11 58399684 58399832 -92383721 + FLAM_A SINE Alu 10 132 -1 217 234 21 0 chr11 58399832 58399879 -92383674 + GA-rich Low_complexity Low_complexity 1 48 0 403 172 11 86 chr11 58399891 58399984 -92383569 + FRAM SINE Alu 22 107 -59 251 70 0 23 chr11 58400009 58400052 -92383501 + (TA)n Simple_repeat Simple_repeat 1 42 0 249 33 0 0 chr11 58400061 58400091 -92383462 + (TG)n Simple_repeat Simple_repeat 2 31 0 4100 198 29 13 chr11 58400091 58401293 -92382260 + L1MC1 LINE L1 6267 7488 -264 1012 198 18 9 chr11 58401287 58401504 -92382049 + L1MC1 LINE L1 6009 6227 -106 * 287 177 16 0 chr11 58401564 58401626 -92381927 - L1M4 LINE L1 -891 5255 5193 446 200 10 10 chr11 58401642 58401742 -92381811 + L1MC1 LINE L1 6234 6333 0 1117 268 82 74 chr11 58401742 58402417 -92381136 + L1ME3A LINE L1 5438 6117 -53 469 301 147 0 chr11 58402525 58402688 -92380865 - MER5A DNA MER1_type 0 189 3 287 325 121 19 chr11 58402694 58402851 -92380702 - L2 LINE L2 -518 2796 2624 23 33 0 0 chr11 58403785 58403815 -92379738 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr11 58404351 58404373 -92379180 + (A)n Simple_repeat Simple_repeat 1 22 0 390 266 83 62 chr11 58404411 58404652 -92378901 - HERVL LTR ERVL -1497 4157 3912 295 339 54 18 chr11 58404813 58405034 -92378519 + L1MC4 LINE L1 6790 7018 -1024 207 0 0 0 chr11 58406152 58406175 -92377378 + (TTG)n Simple_repeat Simple_repeat 2 24 0 430 255 48 76 chr11 58406719 58406970 -92376583 - L2 LINE L2 -74 3239 2996 715 192 138 45 chr11 58406992 58407216 -92376337 - MLT1B LTR MaLR -145 245 1 207 239 104 30 chr11 58407218 58407285 -92376268 + MIR SINE MIR 156 227 -35 1848 206 70 74 chr11 58407706 58408273 -92375280 - MER74B LTR ERVL 0 622 58 293 319 151 0 chr11 58408531 58408650 -92374903 - L3 LINE CR1 -1121 456 320 623 279 68 16 chr11 58409006 58409215 -92374338 + MIR SINE MIR 34 252 -10 308 329 89 14 chr11 58409487 58409633 -92373920 + MIR SINE MIR 20 176 -86 347 284 77 38 chr11 58410215 58410398 -92373155 + MIR SINE MIR 70 259 -3 194 283 171 56 chr11 58410686 58410955 -92372598 - L2 LINE L2 -117 3196 2897 1769 284 96 76 chr11 58411028 58412043 -92371510 - L2 LINE L2 -437 2877 1843 23 0 0 0 chr11 58414702 58414725 -92368828 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr11 58414780 58414814 -92368739 + AT_rich Low_complexity Low_complexity 1 34 0 2249 194 2 5 chr11 58414853 58415281 -92368272 - L1MA7 LINE L1 -408 5883 5457 1852 212 7 14 chr11 58415315 58415745 -92367808 + L1MA7 LINE L1 5865 6291 0 288 171 0 0 chr11 58417007 58417060 -92366493 - MLT2C1 LTR ERVL -3 394 351 248 51 0 26 chr11 58417060 58417099 -92366454 + (TG)n Simple_repeat Simple_repeat 2 39 0 313 250 29 73 chr11 58417183 58417319 -92366234 - MLT2D LTR ERVL -116 298 169 5480 214 71 18 chr11 58417355 58422089 -92361464 + L1PBa LINE L1 3 3990 -2872 27101 72 12 4 chr11 58422095 58426610 -92356943 - L1PA6 LINE L1 0 6154 1603 1945 205 22 7 chr11 58426611 58427059 -92356494 + L1 LINE L1 3979 4433 -2429 396 351 33 65 chr11 58427841 58428300 -92355253 - ERVL LTR ERVL -3429 2335 1892 6303 159 58 5 chr11 58428309 58429477 -92354076 + Tigger3b DNA MER2_type 2 1231 0 3217 37 0 0 chr11 58429674 58430080 -92353473 - L1PA3 LINE L1 -743 5403 4998 6577 19 0 1 chr11 58430080 58430834 -92352719 + L1PA3 LINE L1 5400 6155 0 3418 205 22 76 chr11 58431346 58432370 -92351183 + LTR5 LTR ERVK 1 969 0 2056 142 0 3 chr11 58432622 58432917 -92350636 - AluSg SINE Alu -16 294 1 1490 189 46 4 chr11 58433297 58433578 -92349975 - AluJo SINE Alu -19 293 1 591 312 108 42 chr11 58433966 58434083 -92349470 - LTR33 LTR ERVL -19 502 394 2286 194 108 27 chr11 58434083 58434553 -92349000 + MLT2B3 LTR ERVL 3 519 -35 477 34 0 0 chr11 58434553 58434612 -92348941 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 2286 194 108 27 chr11 58434612 58434652 -92348901 + MLT2B3 LTR ERVL 519 554 0 591 312 108 42 chr11 58434652 58435005 -92348548 - LTR33 LTR ERVL -127 394 1 1368 189 63 32 chr11 58435501 58435786 -92347767 - AluJb SINE Alu -15 297 4 24 0 0 0 chr11 58436209 58436233 -92347320 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr11 58436401 58436424 -92347129 + (TG)n Simple_repeat Simple_repeat 2 24 0 25 65 0 0 chr11 58436711 58436757 -92346796 + AT_rich Low_complexity Low_complexity 1 46 0 1938 118 0 18 chr11 58436763 58437043 -92346510 + AluSx SINE Alu 28 302 -10 49 76 0 0 chr11 58437245 58437350 -92346203 + AT_rich Low_complexity Low_complexity 1 105 0 21495 33 0 1 chr11 58437444 58440820 -92342733 - L1PA2 LINE L1 -2 6153 2772 852 150 16 47 chr11 58440820 58441013 -92342540 - MER65A LTR ERV1 -258 187 1 2550 231 41 7 chr11 58441014 58441630 -92341923 - MER65A-int LTR ERV1 0 4871 4235 2479 239 78 80 chr11 58441629 58443055 -92340498 - MER65A-int LTR ERV1 -740 4131 3281 * 2335 83 0 7 chr11 58443055 58443355 -92340198 - AluSp SINE Alu -15 298 1 2479 239 78 80 chr11 58443355 58444156 -92339397 - MER65A-int LTR ERV1 -1590 3281 2480 629 193 91 37 chr11 58444239 58444426 -92339127 - MER65A-int LTR ERV1 -2869 3729 3533 207 0 0 0 chr11 58444439 58444462 -92339091 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1066 198 40 63 chr11 58444723 58445274 -92338279 - MER65A-int LTR ERV1 -4322 2436 1736 2370 162 59 138 chr11 58445309 58446233 -92337320 - MER65A-int LTR ERV1 -2377 2494 1064 2017 117 0 41 chr11 58446233 58446550 -92337003 + AluSg SINE Alu 2 305 -5 2370 162 59 138 chr11 58446550 58446667 -92336886 - MER65A-int LTR ERV1 -3807 1064 939 538 143 21 203 chr11 58446663 58446900 -92336653 - LTR57-int LTR ERVL -4593 750 557 * 3675 219 49 59 chr11 58446794 58448228 -92335325 - MER65A-int LTR ERV1 -3347 1524 59 1085 180 28 9 chr11 58448284 58448501 -92335052 - MER65A LTR ERV1 0 445 225 212 0 36 0 chr11 58448504 58448532 -92335021 + (TTG)n Simple_repeat Simple_repeat 2 30 0 933 152 30 6 chr11 58449162 58449327 -92334226 - MER65A LTR ERV1 -225 220 52 632 207 0 0 chr11 58449360 58449481 -92334072 - AluJb SINE Alu -191 121 1 213 301 53 44 chr11 58449564 58449677 -92333876 + MER5A DNA MER1_type 2 115 -74 366 254 123 0 chr11 58449715 58449829 -92333724 - MIR SINE MIR -18 244 117 406 221 39 39 chr11 58450255 58450359 -92333194 - L2 LINE L2 0 3313 3210 967 254 52 10 chr11 58450592 58450880 -92332673 - L1MC4 LINE L1 -997 7045 6746 3333 65 0 5 chr11 58450895 58451327 -92332226 - L1PA8 LINE L1 0 6172 5743 634 299 74 34 chr11 58451330 58452020 -92331533 + MER20B DNA MER1_type 48 783 0 360 281 152 0 chr11 58452450 58452628 -92330925 + L2 LINE L2 3094 3298 -15 25 31 0 0 chr11 58454360 58454392 -92329161 + AT_rich Low_complexity Low_complexity 1 32 0 679 183 153 111 chr11 58454542 58454777 -92328776 - LTR42 LTR ERVL -244 251 7 1835 151 49 0 chr11 58456759 58457043 -92326510 - AluSx SINE Alu -14 298 1 700 313 185 24 chr11 58457276 58457530 -92326023 + MLT1H LTR MaLR 71 351 -204 216 402 0 0 chr11 58457642 58457744 -92325809 + MIR SINE MIR 48 149 -113 197 243 68 27 chr11 58458039 58458113 -92325440 + MIR SINE MIR 66 142 -66 1972 147 27 0 chr11 58458188 58458488 -92325065 + AluSx SINE Alu 2 309 -3 2816 10 0 0 chr11 58458700 58459006 -92324547 + AluYa5 SINE Alu 1 306 -5 1338 291 70 65 chr11 58459304 58459871 -92323682 + L2 LINE L2 2321 2909 -404 306 0 0 0 chr11 58459871 58459905 -92323648 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1338 291 70 65 chr11 58459905 58460311 -92323242 + L2 LINE L2 2909 3311 -2 2195 114 0 3 chr11 58460355 58460661 -92322892 - AluSg SINE Alu -5 305 1 867 220 10 2 chr11 58461789 58462099 -92321454 + MLT1B LTR MaLR 5 390 0 24 53 0 0 chr11 58462195 58462233 -92321320 + AT_rich Low_complexity Low_complexity 1 38 0 707 108 0 54 chr11 58462614 58462743 -92320810 - L1PA11 LINE L1 0 6174 6053 1814 89 16 0 chr11 58462743 58463000 -92320553 + L1PA10 LINE L1 5783 6043 -125 23 33 0 0 chr11 58463596 58463626 -92319927 + AT_rich Low_complexity Low_complexity 1 30 0 1697 195 105 32 chr11 58464948 58465415 -92318138 + MLT1D LTR MaLR 1 501 -4 1684 182 0 26 chr11 58466734 58467047 -92316506 - AluSx SINE Alu -7 305 1 294 239 110 14 chr11 58468779 58468860 -92314693 - FLAM SINE Alu -11 122 44 2058 123 0 0 chr11 58468946 58469416 -92314137 + AluSq SINE Alu 1 470 0 249 250 0 50 chr11 58469882 58469942 -92313611 - L2 LINE L2 -17 3255 3199 401 281 31 31 chr11 58470003 58470170 -92313383 + MIR SINE MIR 42 207 -55 210 208 0 0 chr11 58470238 58470286 -92313267 + (TA)n Simple_repeat Simple_repeat 1 48 0 602 224 259 5 chr11 58470292 58470493 -92313060 + LTR50 LTR ERVL 167 418 -377 322 329 0 0 chr11 58470876 58470949 -92312604 - L2 LINE L2 -50 3222 3150 189 308 77 0 chr11 58470995 58471060 -92312493 - MIR SINE MIR -100 108 39 10777 25 1 0 chr11 58471396 58472952 -92310601 - L1PA2 LINE L1 -500 5655 4099 4450 23 0 0 chr11 58472952 58473468 -92310085 + L1PA2 LINE L1 5637 6153 -2 416 337 123 14 chr11 58473877 58474162 -92309391 + MLT1J2 LTR MaLR 8 323 -127 270 191 0 15 chr11 58474426 58474494 -92309059 + L1MC1 LINE L1 6267 6333 0 31 68 0 0 chr11 58474686 58474745 -92308808 + AT_rich Low_complexity Low_complexity 1 59 0 265 320 31 62 chr11 58475047 58475175 -92308378 + L2 LINE L2 3137 3260 -12 285 197 0 0 chr11 58476226 58476297 -92307256 + CT-rich Low_complexity Low_complexity 2 72 0 233 405 47 20 chr11 58476347 58476495 -92307058 + MIR3 SINE MIR 40 191 -17 297 302 238 10 chr11 58477077 58477279 -92306274 + MIR SINE MIR 15 262 0 306 113 32 0 chr11 58477317 58477379 -92306174 - L1MB4 LINE L1 -8 6172 6109 2145 178 35 35 chr11 58477386 58477847 -92305706 - L1MB3 LINE L1 -32 6151 5691 308 230 108 0 chr11 58477936 58478010 -92305543 - L2 LINE L2 -3 3269 3188 354 213 62 6 chr11 58478646 58478766 -92304787 - L1MA9 LINE L1 -25 6275 6156 2118 113 23 0 chr11 58478971 58479271 -92304282 + AluSq SINE Alu 4 310 -3 24 67 0 0 chr11 58479305 58479350 -92304203 + AT_rich Low_complexity Low_complexity 1 45 0 604 276 142 13 chr11 58479473 58479705 -92303848 - MIR SINE MIR 0 262 1 328 255 28 19 chr11 58479731 58479837 -92303716 - MER112 DNA MER1_type -11 249 143 531 226 14 41 chr11 58479837 58479926 -92303627 - MER58B DNA MER1_type -2083 337 252 2267 221 35 2 chr11 58479926 58480405 -92303148 - LTR42 LTR ERVL 0 495 1 531 226 14 41 chr11 58480405 58480461 -92303092 - MER58B DNA MER1_type -2168 252 196 672 234 38 0 chr11 58480482 58480640 -92302913 + MER20 DNA MER1_type 55 218 -1 899 251 26 0 chr11 58480650 58480845 -92302708 - MER58B DNA MER1_type -141 200 1 325 250 81 0 chr11 58480849 58480973 -92302580 - MER112 DNA MER1_type -109 151 18 230 269 76 69 chr11 58482509 58482654 -92300899 + MER103 DNA DNA 2 147 -19 4153 70 28 9 chr11 58483596 58484169 -92299384 - L1PB1 LINE L1 -3 6148 5565 278 232 0 43 chr11 58485985 58486054 -92297499 - MIR SINE MIR -59 203 138 356 333 16 8 chr11 58486113 58486239 -92297314 + L2 LINE L2 3187 3313 0 220 214 36 18 chr11 58486494 58486550 -92297003 + MIR3 SINE MIR 148 204 -4 23 33 0 0 chr11 58487633 58487663 -92295890 + AT_rich Low_complexity Low_complexity 1 30 0 269 310 120 10 chr11 58489121 58489221 -92294332 - MIR SINE MIR -71 137 27 396 234 51 58 chr11 58489421 58489558 -92293995 + MIR SINE MIR 126 261 -1 313 381 70 13 chr11 58490275 58490648 -92292905 - L3 LINE CR1 -369 1208 815 2110 122 6 13 chr11 58492235 58492546 -92291007 - AluSx SINE Alu -1 311 3 1304 107 15 49 chr11 58492751 58492956 -92290597 + AluSg/x SINE Alu 102 299 -11 2016 134 56 36 chr11 58493605 58493962 -92289591 - THE1B LTR MaLR 0 364 1 278 360 8 0 chr11 58495069 58495194 -92288359 + HAL1 LINE L1 744 869 -1638 * 1695 92 0 0 chr11 58495188 58495417 -92288136 + L1P3 LINE L1 8 236 -6225 292 375 8 16 chr11 58495429 58495557 -92287996 + MIR SINE MIR 19 145 -63 26 0 0 0 chr11 58495578 58495604 -92287949 + AT_rich Low_complexity Low_complexity 1 26 0 26 82 0 0 chr11 58496482 58496543 -92287010 + AT_rich Low_complexity Low_complexity 1 61 0 284 262 0 0 chr11 58496934 58496995 -92286558 - L2 LINE L2 -9 3263 3203 237 277 85 0 chr11 58497178 58497272 -92286281 - MIR SINE MIR -36 226 125 2796 177 14 148 chr11 58497411 58497992 -92285561 - MLT2B3 LTR ERVL -12 508 1 428 277 19 39 chr11 58498568 58498723 -92284830 - MLT1J LTR MaLR -2 509 358 608 284 73 13 chr11 58498751 58498983 -92284570 - MLT1J LTR MaLR -234 277 32 232 424 0 0 chr11 58499097 58499182 -92284371 + MIR SINE MIR 9 93 -169 317 343 0 9 chr11 58499334 58499442 -92284111 + L2 LINE L2 3203 3309 -4 22 0 0 0 chr11 58499485 58499507 -92284046 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 58501051 58501075 -92282478 + AT_rich Low_complexity Low_complexity 1 24 0 7541 31 0 0 chr11 58501564 58502833 -92280720 - L1PA4 LINE L1 0 6155 4885 1220 292 93 82 chr11 58503817 58504718 -92278835 + L1M4 LINE L1 3674 4595 -1551 2459 232 42 6 chr11 58504718 58505364 -92278189 + LTR65 LTR ERV1 1 669 0 1220 292 93 82 chr11 58505364 58505763 -92277790 + L1M4 LINE L1 4595 4988 -1158 6834 38 0 0 chr11 58505895 58506711 -92276842 - L1PA5 LINE L1 -9 6145 5330 3143 32 0 0 chr11 58506704 58507083 -92276470 + L1P LINE L1 4895 5273 -873 * 1027 231 43 35 chr11 58507085 58507453 -92276100 - L1 LINE L1 -3057 3089 2719 * 3831 145 15 9 chr11 58507450 58508119 -92275434 + L1MA4 LINE L1 5269 5941 -359 463 54 0 54 chr11 58508138 58508231 -92275322 + (TA)n Simple_repeat Simple_repeat 2 89 0 2438 97 0 14 chr11 58508232 58508594 -92274959 + L1PB1 LINE L1 5794 6150 -1 2380 180 28 2 chr11 58508739 58509167 -92274386 - Tigger2 DNA MER2_type 0 2718 2280 338 229 0 0 chr11 58509164 58509234 -92274319 + MER8 DNA MER2_type 170 239 0 * 5267 141 24 16 chr11 58511727 58512406 -92271147 - L1PA16 LINE L1 0 6166 5476 1433 192 36 36 chr11 58512406 58512708 -92270845 - AluJb SINE Alu -10 302 1 5267 141 24 16 chr11 58512708 58513046 -92270507 - L1PA16 LINE L1 -690 5476 5142 2269 115 0 0 chr11 58513152 58513457 -92270096 + AluSq SINE Alu 1 305 -8 21 36 0 0 chr11 58513547 58513575 -92269978 + AT_rich Low_complexity Low_complexity 1 28 0 223 267 67 0 chr11 58514385 58514460 -92269093 - L2 LINE L2 -5 3308 3229 868 158 0 0 chr11 58515913 58516046 -92267507 + AluSq/x SINE Alu 1 133 -179 2255 209 38 10 chr11 58516384 58516891 -92266662 + L1MD2 LINE L1 5634 6154 -205 413 262 35 14 chr11 58516898 58517043 -92266510 + L1MD2 LINE L1 6199 6346 -13 6942 35 3 5 chr11 58519125 58519977 -92263576 + L1PA4 LINE L1 5303 6153 -2 564 346 130 28 chr11 58519994 58520424 -92263129 + L2 LINE L2 2840 3313 0 1091 208 31 62 chr11 58520520 58520905 -92262648 + L1 LINE L1 4960 5332 -814 4376 185 44 10 chr11 58521035 58522230 -92261323 + L1PBb LINE L1 913 2208 -3996 2112 108 0 7 chr11 58522230 58522516 -92261037 + AluSc SINE Alu 1 284 -25 306 125 0 0 chr11 58522516 58522564 -92260989 + (TA)n Simple_repeat Simple_repeat 1 48 0 258 135 0 58 chr11 58522574 58522626 -92260927 + L1PBb LINE L1 2238 2286 -3918 1693 296 107 64 chr11 58522917 58524215 -92259338 - L2 LINE L2 -117 3196 1843 27 49 0 0 chr11 58524585 58524626 -92258927 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr11 58526857 58526880 -92256673 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr11 58526935 58526970 -92256583 + AT_rich Low_complexity Low_complexity 1 35 0 2249 194 2 5 chr11 58527009 58527437 -92256116 - L1MA7 LINE L1 -408 5883 5457 1852 212 7 14 chr11 58527471 58527901 -92255652 + L1MA7 LINE L1 5865 6291 0 275 216 0 0 chr11 58529159 58529210 -92254343 - MLT2D LTR ERVL 0 414 364 270 81 0 0 chr11 58529267 58529304 -92254249 + (TG)n Simple_repeat Simple_repeat 2 38 0 310 274 30 74 chr11 58529401 58529536 -92254017 - MLT2D LTR ERVL -117 297 169 2780 306 43 29 chr11 58529596 58531024 -92252529 + L1PBa LINE L1 -632 815 -5389 6013 177 35 13 chr11 58531081 58532457 -92251096 + L1MA7 LINE L1 1 1251 -4953 3236 194 55 10 chr11 58532702 58533413 -92250140 + L1MA7 LINE L1 5344 6086 -262 507 268 50 54 chr11 58533929 58534168 -92249385 + L1MC4 LINE L1 7762 7999 -43 5243 153 14 25 chr11 58534490 58535526 -92248027 - L1PA15 LINE L1 -1 6164 5121 375 80 0 0 chr11 58535547 58535597 -92247956 + U2 snRNA snRNA 6 55 -133 3521 212 17 4 chr11 58535605 58536446 -92247107 - L1 LINE L1 -1034 5112 4261 406 328 98 62 chr11 58538582 58538920 -92244633 + LTR16C LTR ERVL 1 350 -141 461 213 35 92 chr11 58539077 58539218 -92244335 + LTR16C LTR ERVL 357 489 -2 793 330 58 51 chr11 58539733 58540522 -92243031 + HERV16 LTR ERVL 521 1315 -3681 936 339 67 19 chr11 58540593 58541456 -92242097 + HERV16 LTR ERVL 2299 3253 -2511 7416 126 5 13 chr11 58541457 58542170 -92241383 + HSMAR1 DNA Mariner 37 754 -533 3461 104 66 7 chr11 58542170 58542718 -92240835 + LTR19B LTR ERV1 1 580 0 7416 126 5 13 chr11 58542718 58543099 -92240454 + HSMAR1 DNA Mariner 754 1121 -166 2023 146 0 0 chr11 58543099 58543393 -92240160 - AluY SINE Alu -17 294 1 7416 126 5 13 chr11 58543393 58543559 -92239994 + HSMAR1 DNA Mariner 1121 1287 0 228 234 96 53 chr11 58543561 58543749 -92239804 - L1 LINE L1 -762 5384 5189 960 167 0 0 chr11 58545304 58545454 -92238099 + FRAM SINE Alu 11 160 -16 7118 24 0 0 chr11 58545592 58546419 -92237134 + L1PA4 LINE L1 5326 6152 -3 26 64 0 0 chr11 58546419 58546466 -92237087 + AT_rich Low_complexity Low_complexity 1 47 0 216 86 0 0 chr11 58546489 58546524 -92237029 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1039 146 28 0 chr11 58547779 58547992 -92235561 - L1MA8 LINE L1 0 6291 6073 348 111 0 0 chr11 58548552 58548606 -92234947 + (TG)n Simple_repeat Simple_repeat 1 54 0 6313 190 54 11 chr11 58548818 58550069 -92233484 - MSTA-int LTR MaLR -346 1305 1 1461 194 98 49 chr11 58550069 58550477 -92233076 - MSTA LTR MaLR 0 428 1 13308 223 27 23 chr11 58550490 58551612 -92231941 + L1PA16 LINE L1 1960 3076 -3793 5232 158 29 40 chr11 58551612 58552695 -92230858 - MER11C LTR ERVK 0 1071 1 13308 223 27 23 chr11 58552695 58556351 -92227202 + L1PA16 LINE L1 3076 6760 -109 1598 209 91 20 chr11 58556351 58556749 -92226804 - MSTB LTR MaLR 0 426 1 13308 223 27 23 chr11 58556749 58556844 -92226709 + L1PA16 LINE L1 6760 6853 -16 276 366 98 7 chr11 58556961 58557114 -92226439 + LTR16C LTR ERVL 37 203 -288 2390 272 28 16 chr11 58557120 58558119 -92225434 + L1MEc LINE L1 2149 3119 -3096 276 253 77 0 chr11 58558096 58558187 -92225366 + L1MEc LINE L1 3674 3771 -2444 * 8532 178 28 17 chr11 58558506 58560476 -92223077 - L1MA9 LINE L1 -22 6290 4197 3644 51 26 0 chr11 58560476 58560943 -92222610 - L1PA4 LINE L1 0 6155 5677 8532 178 28 17 chr11 58560943 58561547 -92222006 - L1MA9 LINE L1 -2115 4197 3602 1012 324 31 50 chr11 58561761 58562335 -92221218 + HERVL LTR ERVL 3843 4405 -1249 2397 138 14 0 chr11 58562335 58562705 -92220848 - THE1C LTR MaLR 0 375 1 6534 145 4 5 chr11 58562705 58563690 -92219863 - THE1C-int LTR MaLR 0 1580 597 357 82 0 0 chr11 58563850 58563899 -92219654 + (A)n Simple_repeat Simple_repeat 1 49 0 278 305 110 0 chr11 58564043 58564161 -92219392 - MIR3 SINE MIR -17 191 61 186 224 184 0 chr11 58564176 58564252 -92219301 + MIR SINE MIR 163 252 -10 347 133 85 188 chr11 58564719 58564814 -92218739 - L1MA10 LINE L1 -2 6332 6238 829 204 44 51 chr11 58564814 58565112 -92218441 - L1ME1 LINE L1 -68 6098 5810 455 243 11 95 chr11 58565745 58565934 -92217619 - MLT1K LTR MaLR -57 531 359 330 67 0 0 chr11 58566407 58566452 -92217101 + (CA)n Simple_repeat Simple_repeat 2 46 0 686 254 71 31 chr11 58566463 58566845 -92216708 - L1ME4a LINE L1 -162 5959 5563 24 77 0 0 chr11 58567349 58567401 -92216152 + AT_rich Low_complexity Low_complexity 1 52 0 219 361 121 18 chr11 58568127 58568293 -92215260 - MIR SINE MIR -19 243 61 3091 208 31 56 chr11 58568737 58569599 -92213954 + L1MD2 LINE L1 5517 6357 -2 512 274 45 63 chr11 58569802 58570025 -92213528 - MER20 DNA MER1_type 0 219 1 429 272 110 0 chr11 58570610 58570746 -92212807 - MIR3 SINE MIR -21 187 37 644 313 48 13 chr11 58570806 58571036 -92212517 + MIR SINE MIR 5 242 -20 284 277 101 17 chr11 58571158 58571277 -92212276 - MIR3 SINE MIR -67 141 13 721 298 57 27 chr11 58572055 58572387 -92211166 - L2 LINE L2 -422 2892 2551 5097 108 8 7 chr11 58572730 58573465 -92210088 - LTR17 LTR ERV1 0 780 1 210 214 86 43 chr11 58573505 58573575 -92209978 + L2 LINE L2 3169 3241 -31 3935 123 3 10 chr11 58574244 58574846 -92208707 - MER4A LTR ERV1 -2 598 1 12407 106 32 27 chr11 58574858 58576099 -92207454 - MER4A-int LTR ERV1 -2 6596 5339 1956 176 0 3 chr11 58576099 58576412 -92207141 - AluSx SINE Alu 0 312 1 12407 106 32 27 chr11 58576412 58577249 -92206304 - MER4A-int LTR ERV1 -1259 5339 4508 2624 129 23 33 chr11 58577263 58577745 -92205808 - MER4A-int LTR ERV1 -2307 4291 3815 * 3952 133 77 30 chr11 58577742 58579392 -92204161 - MER4A-int LTR ERV1 -2922 3676 1458 3984 130 49 18 chr11 58579395 58580308 -92203245 - MER4A-int LTR ERV1 -5560 1198 194 879 238 87 0 chr11 58580345 58580551 -92203002 - MER4A-int LTR ERV1 -4131 2200 1977 727 109 45 18 chr11 58580551 58580661 -92202892 - THE1B LTR MaLR -251 113 1 2910 91 8 0 chr11 58580661 58581055 -92202498 - THE1B-int LTR MaLR 0 1580 1184 2167 114 60 15 chr11 58581055 58581389 -92202164 + LTR8 LTR ERV1 343 691 0 657 131 10 0 chr11 58581389 58581488 -92202065 - MER4A-int LTR ERV1 -6498 100 1 4201 101 7 2 chr11 58581491 58582088 -92201465 - MER4A LTR ERV1 0 600 1 191 190 17 0 chr11 58582210 58582268 -92201285 + (TAA)n Simple_repeat Simple_repeat 2 60 0 278 267 105 0 chr11 58582352 58582438 -92201115 - MIR SINE MIR -109 153 59 254 362 141 51 chr11 58582628 58582805 -92200748 + L2 LINE L2 3078 3270 -2 227 324 157 0 chr11 58583311 58583413 -92200140 + L2 LINE L2 3196 3313 0 472 241 15 38 chr11 58583603 58583736 -92199817 - MER5A DNA MER1_type -24 165 36 208 263 113 12 chr11 58584335 58584415 -92199138 + MIR SINE MIR 48 135 -73 201 353 121 9 chr11 58585894 58586010 -92197543 - MIR SINE MIR -114 148 20 182 385 66 33 chr11 58586187 58586309 -92197244 - L2 LINE L2 -9 3304 3179 300 111 0 0 chr11 58586727 58586772 -92196781 + (TTCC)n Simple_repeat Simple_repeat 4 48 0 2067 130 13 0 chr11 58586785 58587084 -92196469 - AluSp SINE Alu -8 305 3 233 307 17 45 chr11 58587141 58587317 -92196236 - L2 LINE L2 -595 2719 2549 2231 128 0 10 chr11 58587393 58587706 -92195847 - AluSx SINE Alu -2 310 1 313 313 38 15 chr11 58587976 58588107 -92195446 + MIR SINE MIR 20 153 -55 568 165 0 0 chr11 58588624 58588715 -92194838 + MER69 DNA AcHobo 45 135 -2391 1278 168 26 4 chr11 58588860 58589086 -92194467 + AluJb SINE Alu 1 231 -81 255 61 0 0 chr11 58589107 58589140 -92194413 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 842 279 188 34 chr11 58589153 58589748 -92193805 + L1MC4a LINE L1 5421 6107 -1701 228 405 0 0 chr11 58589811 58589900 -92193653 + MIR SINE MIR 58 146 -62 218 347 13 0 chr11 58589920 58589995 -92193558 + L2 LINE L2 2890 2965 -307 198 71 0 0 chr11 58590811 58590839 -92192714 + (CA)n Simple_repeat Simple_repeat 1 28 0 25 51 0 0 chr11 58591054 58591093 -92192460 + AT_rich Low_complexity Low_complexity 1 39 0 300 53 0 0 chr11 58591105 58591143 -92192410 + (TG)n Simple_repeat Simple_repeat 2 39 0 750 160 13 6 chr11 58591881 58592037 -92191516 + CT-rich Low_complexity Low_complexity 3 159 0 229 146 0 42 chr11 58592038 58592086 -92191467 + (TTCTC)n Simple_repeat Simple_repeat 5 50 0 315 143 0 20 chr11 58592087 58592136 -92191417 - AluJb SINE Alu -179 123 76 192 176 98 118 chr11 58592143 58592245 -92191308 - MIR SINE MIR -56 206 107 2166 262 84 64 chr11 58593596 58594733 -92188820 - L2 LINE L2 -12 3301 2131 334 274 18 26 chr11 58594743 58594856 -92188697 + L2 LINE L2 2273 2384 -930 765 336 20 0 chr11 58594903 58595147 -92188406 - MIR SINE MIR -13 249 1 1881 157 58 3 chr11 58595604 58595929 -92187624 - MER61A LTR ERV1 0 343 1 620 253 144 26 chr11 58596020 58596325 -92187228 - L1MC4a LINE L1 -1876 5932 5592 * 2239 204 43 33 chr11 58596320 58596902 -92186651 - L1MA10 LINE L1 -1 6333 5746 869 222 49 30 chr11 58596919 58597185 -92186368 - L1MC4a LINE L1 -2202 5606 5336 32 26 0 0 chr11 58597306 58597345 -92186208 + AT_rich Low_complexity Low_complexity 1 39 0 4239 112 63 105 chr11 58600496 58601986 -92181567 - pTR5 LTR ERV1 0 2606 1524 198 328 123 41 chr11 58603365 58603487 -92180066 + L2 LINE L2 3141 3272 0 368 313 55 16 chr11 58603906 58604034 -92179519 + MIR3 SINE MIR 64 196 -12 340 281 26 18 chr11 58605687 58605801 -92177752 + MIR SINE MIR 26 140 -68 22 56 0 0 chr11 58605829 58605865 -92177688 + AT_rich Low_complexity Low_complexity 1 36 0 247 256 183 0 chr11 58605897 58605979 -92177574 - MIR SINE MIR -112 150 54 338 358 27 7 chr11 58606055 58606203 -92177350 - MIR SINE MIR 0 262 112 405 325 42 17 chr11 58606660 58606941 -92176612 - HERVL LTR ERVL -1035 4729 4402 1500 142 60 0 chr11 58606942 58607239 -92176314 + THE1C LTR MaLR 1 364 0 2667 89 133 0 chr11 58607239 58607668 -92175885 + THE1C-int LTR MaLR 1 486 -1094 2365 73 3 26 chr11 58607802 58608115 -92175438 - AluY SINE Alu -5 306 1 184 343 71 36 chr11 58608288 58608428 -92175125 + L3b LINE CR1 1331 1475 -108 284 296 122 68 chr11 58608488 58608985 -92174568 - L2 LINE L2 -92 3180 2680 1004 188 9 0 chr11 58609444 58609657 -92173896 + L1 LINE L1 3319 3533 -2613 21 36 0 0 chr11 58609680 58609708 -92173845 + AT_rich Low_complexity Low_complexity 1 28 0 648 110 11 0 chr11 58609753 58609844 -92173709 - FLAM_C SINE Alu -38 105 14 273 340 27 130 chr11 58611928 58612266 -92171287 - L2 LINE L2 -37 3235 2933 189 0 0 0 chr11 58612402 58612423 -92171130 + (CAGAT)n Simple_repeat Simple_repeat 3 23 0 203 281 22 45 chr11 58612852 58612941 -92170612 + L2 LINE L2 3184 3270 -2 180 158 0 0 chr11 58613477 58613515 -92170038 + (TCTCTG)n Simple_repeat Simple_repeat 5 42 0 2803 68 6 0 chr11 58613519 58613872 -92169681 + THE1A LTR MaLR 1 355 0 2065 79 7 0 chr11 58613872 58614162 -92169391 + THE1A-int LTR MaLR 1 292 -1288 200 261 227 0 chr11 58614264 58614352 -92169201 + MIR SINE MIR 36 143 -65 1036 64 40 12 chr11 58614790 58614963 -92168590 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 831 202 133 12 chr11 58615307 58615555 -92167998 + LTR8A LTR ERV1 287 564 -163 487 139 25 0 chr11 58615558 58615637 -92167916 + THE1C LTR MaLR 1 81 -294 561 276 21 44 chr11 58616138 58616326 -92167227 + MIR SINE MIR 53 235 -27 1614 129 0 0 chr11 58617216 58617472 -92166081 - L1PA15 LINE L1 -206 5959 5704 489 111 0 0 chr11 58617472 58617553 -92166000 + L1PA15 LINE L1 6085 6165 0 319 259 70 70 chr11 58617600 58617731 -92165822 - L1ME4a LINE L1 -161 5960 5827 11240 90 25 23 chr11 58617731 58620230 -92163323 - L1PA7 LINE L1 -2 6152 3649 319 259 70 70 chr11 58620230 58620299 -92163254 - L1ME4a LINE L1 -293 5828 5760 22 0 0 0 chr11 58620301 58620323 -92163230 + AT_rich Low_complexity Low_complexity 1 22 0 465 158 0 0 chr11 58620771 58620847 -92162706 + MER31B LTR ERV1 1 76 -390 1749 247 58 48 chr11 58620852 58621505 -92162048 + MER67B LTR ERV1 2 661 0 1569 50 30 0 chr11 58621796 58622032 -92161521 + L1PA4 LINE L1 5939 6180 0 919 210 58 10 chr11 58622243 58622448 -92161105 - MER20 DNA MER1_type -4 215 1 270 176 0 0 chr11 58623307 58623358 -92160195 + (TG)n Simple_repeat Simple_repeat 2 52 0 29 70 0 0 chr11 58623866 58623923 -92159630 + AT_rich Low_complexity Low_complexity 1 57 0 229 244 0 0 chr11 58624037 58624082 -92159471 + L2 LINE L2 3227 3271 -1 7656 19 0 0 chr11 58625296 58626629 -92156924 - L1PA2 LINE L1 0 6155 4816 7657 21 2 0 chr11 58626629 58627567 -92155986 + L1PA2 LINE L1 3892 4831 -1315 181 234 168 88 chr11 58627912 58628020 -92155533 + L3 LINE CR1 1399 1546 -31 182 103 0 0 chr11 58628020 58628049 -92155504 + MIR3 SINE MIR 145 173 -35 281 330 71 22 chr11 58629009 58629191 -92154362 + MIR SINE MIR 21 211 -51 1156 161 144 34 chr11 58629305 58629597 -92153956 + MER33 DNA MER1_type 1 324 0 294 29 0 0 chr11 58629910 58629972 -92153581 + (TG)n Simple_repeat Simple_repeat 1 97 0 294 29 0 0 chr11 58629972 58630007 -92153546 + (TG)n Simple_repeat Simple_repeat 2 36 0 1487 134 14 29 chr11 58630126 58630186 -92153367 + L1MA6 LINE L1 6029 6088 -212 3680 121 11 2 chr11 58630186 58630708 -92152845 + MER1A DNA MER1_type 1 527 0 1487 134 14 29 chr11 58630708 58630923 -92152630 + L1MA6 LINE L1 6088 6300 0 245 392 13 51 chr11 58630990 58631148 -92152405 - L2 LINE L2 0 3272 3121 1336 93 10 5 chr11 58631548 58631742 -92151811 + L1PA6 LINE L1 5959 6153 -1 311 235 265 20 chr11 58631746 58631844 -92151709 + MIR SINE MIR 22 143 -119 671 286 21 14 chr11 58633191 58633407 -92150146 - MIR SINE MIR 0 262 47 474 296 31 38 chr11 58633414 58633573 -92149980 + MER5B DNA MER1_type 21 178 0 185 312 64 18 chr11 58633613 58633722 -92149831 + MIR SINE MIR 70 183 -79 361 317 88 1 chr11 58634076 58634246 -92149307 - MIR3 SINE MIR -1 207 17 198 0 0 0 chr11 58634262 58634284 -92149269 + (TTTC)n Simple_repeat Simple_repeat 1 22 0 306 250 71 64 chr11 58634284 58634424 -92149129 - L2 LINE L2 0 3272 3132 558 285 127 9 chr11 58635299 58635527 -92148026 + MIR SINE MIR 2 256 -6 218 211 0 70 chr11 58635874 58635931 -92147622 - L2 LINE L2 0 3272 3220 345 329 67 20 chr11 58636130 58636279 -92147274 - MIR SINE MIR -12 250 95 31 82 0 0 chr11 58636671 58636744 -92146809 + AT_rich Low_complexity Low_complexity 1 73 0 22 35 0 0 chr11 58637622 58637651 -92145902 + AT_rich Low_complexity Low_complexity 1 29 0 239 299 73 44 chr11 58637676 58637813 -92145740 - MIR3 SINE MIR -44 164 24 727 274 10 37 chr11 58638097 58638345 -92145208 - MIR SINE MIR -1 261 27 192 355 73 16 chr11 58638367 58638491 -92145062 + MIR SINE MIR 22 152 -110 232 354 9 18 chr11 58638754 58638867 -92144686 + MIR SINE MIR 30 141 -67 219 374 9 26 chr11 58638892 58639007 -92144546 - L2 LINE L2 -2 3311 3199 590 299 30 45 chr11 58640432 58640633 -92142920 + MIR SINE MIR 11 208 -54 358 306 161 11 chr11 58641735 58641915 -92141638 - MIR SINE MIR -9 253 47 400 371 92 62 chr11 58642119 58642393 -92141160 + L2 LINE L2 2825 3118 -154 813 95 0 0 chr11 58642393 58642509 -92141044 + (CTATG)n Simple_repeat Simple_repeat 4 119 0 400 371 92 62 chr11 58642509 58642668 -92140885 + L2 LINE L2 3118 3271 -1 598 317 49 0 chr11 58643128 58643292 -92140261 + MER91A DNA MER1_type 20 191 -5 186 118 0 0 chr11 58643368 58643402 -92140151 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 199 216 0 0 chr11 58643421 58643458 -92140095 + MIR SINE MIR 8 44 -218 278 314 42 17 chr11 58643889 58644007 -92139546 - L3 LINE CR1 -95 1482 1362 283 185 49 12 chr11 58644705 58644786 -92138767 + CT-rich Low_complexity Low_complexity 2 85 0 459 290 228 33 chr11 58645003 58645337 -92138216 - L3 LINE CR1 -260 1317 919 1706 188 10 3 chr11 58645376 58645668 -92137885 + AluJo SINE Alu 1 294 -18 358 325 136 0 chr11 58646013 58646182 -92137371 - MIR SINE MIR -18 244 53 430 318 74 11 chr11 58646643 58646852 -92136701 - MIR SINE MIR -1 261 31 308 342 27 0 chr11 58647812 58647923 -92135630 + MIR SINE MIR 46 159 -103 21 71 0 0 chr11 58647997 58648039 -92135514 + AT_rich Low_complexity Low_complexity 1 42 0 207 374 88 11 chr11 58648055 58648146 -92135407 + MIR SINE MIR 29 126 -136 202 150 25 0 chr11 58648250 58648290 -92135263 + A-rich Low_complexity Low_complexity 1 41 0 2904 83 17 5 chr11 58649478 58649900 -92133653 + L1MA1 LINE L1 5873 6299 -3 417 289 57 36 chr11 58650079 58650273 -92133280 - MIR SINE MIR -57 205 8 520 280 127 56 chr11 58650409 58650859 -92132694 + L1ME4a LINE L1 5629 6110 -11 262 287 165 9 chr11 58650899 58651014 -92132539 + MIR SINE MIR 20 152 -110 878 199 126 66 chr11 58651303 58651620 -92131933 + MLT1A1 LTR MaLR 1 336 -29 603 264 15 46 chr11 58652538 58652735 -92130818 + MIR SINE MIR 36 226 -36 354 315 0 31 chr11 58653395 58653525 -92130028 + MIR SINE MIR 79 204 -58 315 141 16 0 chr11 58653562 58653626 -92129927 - MADE1 DNA Mariner -15 65 1 338 213 191 21 chr11 58654388 58654482 -92129071 + L2 LINE L2 3204 3313 0 188 344 64 40 chr11 58654624 58654749 -92128804 - MIR SINE MIR -56 206 79 207 203 31 47 chr11 58655214 58655278 -92128275 + (TCCA)n Simple_repeat Simple_repeat 2 64 0 288 237 0 0 chr11 58655278 58655354 -92128199 - L1MC4 LINE L1 -139 7903 7828 352 295 90 0 chr11 58655410 58655532 -92128021 - L1MC/D LINE L1 -2152 5656 5524 2366 94 7 0 chr11 58656048 58656380 -92127173 + AluSc SINE Alu 1 334 0 891 0 0 0 chr11 58656480 58656584 -92126969 - L1PA3 LINE L1 -295 5860 5757 661 45 0 0 chr11 58656583 58656671 -92126882 + L1P LINE L1 3131 3218 -2928 * 264 328 41 16 chr11 58656933 58657055 -92126498 + L2 LINE L2 3188 3312 -1 1978 137 0 0 chr11 58657250 58657577 -92125976 - AluSx SINE Alu 0 327 1 20679 39 2 0 chr11 58657590 58660911 -92122642 - L1PA4 LINE L1 -3 6152 2827 7668 24 0 0 chr11 58660906 58661987 -92121566 - L1PA2 LINE L1 0 6155 5076 * 19447 61 51 3 chr11 58661991 58664698 -92118855 - L1PA4 LINE L1 -3309 2837 1 17294 69 2 0 chr11 58664699 58667064 -92116489 - L1P LINE L1 -3305 2841 473 987 141 6 0 chr11 58667064 58667227 -92116326 - L1P LINE L1 -5972 174 11 669 22 0 0 chr11 58667238 58667329 -92116224 - L1P LINE L1 -3706 2440 2350 271 256 22 33 chr11 58667497 58667587 -92115966 + MLT1L LTR MaLR 7 95 -520 834 253 21 94 chr11 58667717 58668057 -92115496 + MER77 LTR ERV1 54 368 -237 1719 153 17 13 chr11 58668095 58668396 -92115157 + LTR57 LTR ERVL 5 306 -105 386 321 45 18 chr11 58669844 58670065 -92113488 + BaEV-int LTR ERV1 966 1192 -5457 583 292 48 39 chr11 58670100 58670539 -92113014 + BaEV-int LTR ERV1 1296 1738 -4911 2000 170 46 2 chr11 58670826 58671209 -92112344 + L1MA9 LINE L1 5391 5795 -517 297 0 0 0 chr11 58671209 58671242 -92112311 + (CA)n Simple_repeat Simple_repeat 2 34 0 2000 170 46 2 chr11 58671242 58671275 -92112278 + L1MA9 LINE L1 5795 5825 -487 * 4783 153 64 17 chr11 58671263 58671608 -92111945 + L1PA16 LINE L1 4698 5025 -1141 2698 26 0 10 chr11 58671608 58671920 -92111633 + AluYb8 SINE Alu 7 315 -3 4783 153 64 17 chr11 58671920 58672974 -92110579 + L1PA16 LINE L1 5025 6164 -2 220 214 0 0 chr11 58672975 58673017 -92110536 + (TATG)n Simple_repeat Simple_repeat 3 44 0 1430 176 53 51 chr11 58673017 58673257 -92110296 - THE1C LTR MaLR 0 375 132 2231 110 48 25 chr11 58673257 58673613 -92109940 - THE1B LTR MaLR 0 364 1 1430 176 53 51 chr11 58673613 58673746 -92109807 - THE1C LTR MaLR -243 132 1 22 0 0 0 chr11 58673962 58673984 -92109569 + AT_rich Low_complexity Low_complexity 1 22 0 398 249 140 56 chr11 58674041 58674395 -92109158 + L1ME LINE L1 5439 5819 -302 193 209 30 0 chr11 58674718 58674785 -92108768 + GA-rich Low_complexity Low_complexity 3 71 0 200 211 0 0 chr11 58675286 58675324 -92108229 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 6346 244 74 30 chr11 58675474 58679170 -92104383 - L1MD2 LINE L1 -13 6346 2814 1079 44 0 0 chr11 58679170 58679305 -92104248 - L1PA2 LINE L1 0 6155 6021 2355 76 0 3 chr11 58679305 58679608 -92103945 - AluY SINE Alu -9 302 1 6346 244 74 30 chr11 58679608 58679868 -92103685 - L1MD2 LINE L1 -3544 2815 2171 796 205 150 0 chr11 58679872 58680106 -92103447 + L1MDa LINE L1 2028 2296 -4244 1218 106 53 10 chr11 58680122 58680330 -92103223 - Tigger1 DNA MER2_type 0 2418 2202 560 190 113 21 chr11 58680319 58680461 -92103092 - Tigger1 DNA MER2_type -2261 157 3 * 588 190 30 68 chr11 58680462 58680699 -92102854 + L1MDa LINE L1 2329 2556 -3984 6541 149 13 8 chr11 58680975 58682919 -92100634 - L1PA11 LINE L1 -3 7609 5648 * 8880 47 0 0 chr11 58682916 58684860 -92098693 + L1PA2 LINE L1 4215 6152 -3 6264 238 24 44 chr11 58684862 58685434 -92098119 - L1PA11 LINE L1 -3666 3918 3336 1771 189 0 0 chr11 58685434 58685736 -92097817 + AluSx SINE Alu 1 302 -10 6264 238 24 44 chr11 58685736 58688043 -92095510 - L1PA11 LINE L1 -4248 3336 11 21 0 0 0 chr11 58689409 58689430 -92094123 + AT_rich Low_complexity Low_complexity 1 21 0 7578 230 31 13 chr11 58690589 58692678 -92090875 + L1P LINE L1 3027 5151 -995 30 45 0 0 chr11 58692778 58692822 -92090731 + GC_rich Low_complexity Low_complexity 1 44 0 249 31 0 0 chr11 58692856 58692883 -92090670 + (A)n Simple_repeat Simple_repeat 1 28 0 2924 148 17 15 chr11 58692883 58693417 -92090136 - L1MB1 LINE L1 -13 6155 5621 717 296 9 18 chr11 58693450 58693670 -92089883 - MIR SINE MIR -38 224 7 303 309 16 77 chr11 58693837 58694031 -92089522 + MIR SINE MIR 19 200 -62 241 313 0 0 chr11 58694878 58694958 -92088595 + L1MDa LINE L1 2978 3057 -3483 398 118 24 24 chr11 58694958 58695043 -92088510 + L1PA16 LINE L1 6079 6163 -3 227 215 0 15 chr11 58695142 58695207 -92088346 + (TA)n Simple_repeat Simple_repeat 2 65 0 220 198 9 9 chr11 58695237 58695348 -92088205 + (TA)n Simple_repeat Simple_repeat 1 111 0 616 273 203 16 chr11 58695382 58695767 -92087786 - L2 LINE L2 -2 3311 2855 294 295 0 13 chr11 58695964 58696042 -92087511 + L2 LINE L2 3136 3212 -60 200 385 29 29 chr11 58696329 58696503 -92087050 - L2 LINE L2 -556 2758 2585 4747 32 7 0 chr11 58696772 58697336 -92086217 - L1PA3 LINE L1 0 6155 5588 213 81 54 0 chr11 58698841 58698878 -92084675 + T-rich Low_complexity Low_complexity 2 40 0 3994 158 20 11 chr11 58698983 58699698 -92083855 + L1PA16 LINE L1 5445 6165 -1 289 295 39 13 chr11 58700064 58700133 -92083420 + L2 LINE L2 3189 3262 -10 1909 148 7 3 chr11 58700133 58700417 -92083136 + AluSx SINE Alu 1 285 -27 228 111 0 0 chr11 58700425 58700461 -92083092 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 486 264 66 10 chr11 58701397 58701594 -92081959 - L1M4 LINE L1 -2079 4067 3860 270 0 0 0 chr11 58701665 58701695 -92081858 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 628 328 73 10 chr11 58701695 58702094 -92081459 + HERV16 LTR ERVL 2338 2761 -2235 255 263 13 0 chr11 58702178 58702254 -92081299 + L1ME LINE L1 5675 5751 -411 698 324 74 16 chr11 58702263 58702572 -92080981 - LTR16B LTR ERVL 0 464 138 261 0 0 0 chr11 58702872 58702901 -92080652 + (TG)n Simple_repeat Simple_repeat 2 30 0 27 29 0 0 chr11 58703068 58703102 -92080451 + AT_rich Low_complexity Low_complexity 1 34 0 623 297 109 44 chr11 58703821 58703959 -92079594 + L1MC4a LINE L1 5323 5451 -2357 2012 139 7 0 chr11 58703959 58704260 -92079293 + AluSx SINE Alu 1 303 -9 623 297 109 44 chr11 58704260 58704707 -92078846 + L1MC4a LINE L1 5451 5946 -1862 2304 112 3 0 chr11 58704815 58705127 -92078426 + AluSp SINE Alu 1 313 0 289 336 0 19 chr11 58705233 58705340 -92078213 + GA-rich Low_complexity Low_complexity 2 106 0 4111 256 79 22 chr11 58706046 58708822 -92074731 - L1MD2 LINE L1 0 6359 3374 1719 153 61 9 chr11 58708845 58709171 -92074382 - MER61A LTR ERV1 0 343 1 4450 87 97 1 chr11 58709171 58709824 -92073729 - MER61A-int LTR ERV1 0 5217 4503 1437 278 67 5 chr11 58709829 58710441 -92073112 - L1MD2 LINE L1 -3326 2820 2171 1044 160 112 12 chr11 58710450 58710700 -92072853 + L1MDa LINE L1 2033 2307 -4233 1330 137 24 0 chr11 58710710 58710922 -92072631 - Tigger1 DNA MER2_type 0 2418 2202 586 217 7 36 chr11 58710911 58711049 -92072504 - Tigger1 DNA MER2_type -2261 157 24 * 629 185 42 80 chr11 58711049 58711287 -92072266 + L1MDa LINE L1 2322 2550 -3990 2095 115 14 3 chr11 58711465 58711760 -92071793 + AluSx SINE Alu 1 298 -14 496 115 0 0 chr11 58712255 58712333 -92071220 + L1PA13 LINE L1 6083 6160 -3 8357 220 18 11 chr11 58714445 58716235 -92067318 + L1PA16 LINE L1 3037 4814 -1352 231 36 0 0 chr11 58716235 58716263 -92067290 + (CA)n Simple_repeat Simple_repeat 1 28 0 189 0 0 0 chr11 58716262 58716283 -92067270 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 8357 220 18 11 chr11 58716263 58717475 -92066078 + L1PA16 LINE L1 4814 6046 -120 2019 184 28 14 chr11 58717477 58717836 -92065717 - THE1B LTR MaLR 0 364 1 9095 117 122 6 chr11 58717836 58719251 -92064302 - THE1B-int LTR MaLR 0 1580 1 2062 162 55 3 chr11 58719251 58719597 -92063956 - THE1B LTR MaLR 0 364 1 4094 151 62 31 chr11 58719600 58720401 -92063152 - LTR1B LTR ERV1 0 826 1 27027 182 33 27 chr11 58720402 58727217 -92056336 - LTR1B-int LTR ERV1 -1 7090 3 4241 166 45 14 chr11 58727219 58728020 -92055533 - LTR1B LTR ERV1 0 826 1 630 167 9 0 chr11 58728020 58728134 -92055419 + L1PA16 LINE L1 6043 6157 -9 238 345 92 0 chr11 58728502 58728621 -92054932 + L2 LINE L2 3184 3313 0 5497 199 50 45 chr11 58729556 58731097 -92052456 - MER52A LTR ERV1 0 1755 1 506 310 96 25 chr11 58731097 58731494 -92052059 + HERV16 LTR ERVL 2353 2777 -2219 246 329 98 14 chr11 58731669 58731812 -92051741 - LTR16B LTR ERVL -18 446 292 377 390 27 0 chr11 58731846 58732069 -92051484 - LTR16B LTR ERVL -235 229 1 325 225 0 45 chr11 58732074 58732163 -92051390 + L1ME3A LINE L1 5761 5845 -325 399 56 0 0 chr11 58732270 58732324 -92051229 + (TG)n Simple_repeat Simple_repeat 2 55 0 24 32 0 0 chr11 58732480 58732511 -92051042 + AT_rich Low_complexity Low_complexity 1 31 0 588 308 117 26 chr11 58733230 58733812 -92049741 + L1MC4a LINE L1 5323 5957 -1851 262 337 20 0 chr11 58733993 58734091 -92049462 + GA-rich Low_complexity Low_complexity 3 102 0 476 270 13 7 chr11 58734794 58734946 -92048607 - L1MD1 LINE L1 -11 6231 6079 3182 204 51 36 chr11 58734946 58735803 -92047750 - L1MD2 LINE L1 -218 6141 5272 * 6621 35 0 0 chr11 58735802 58736583 -92046970 - L1PA3 LINE L1 0 6155 5375 3696 258 47 16 chr11 58736578 58737938 -92045615 - L1MD2 LINE L1 -870 5276 3875 * 3328 250 71 47 chr11 58737943 58738471 -92045082 - L1MD2 LINE L1 -2335 3811 3297 257 89 22 0 chr11 58738471 58738516 -92045037 + (TTTG)n Simple_repeat Simple_repeat 4 49 0 3328 250 71 47 chr11 58738516 58739589 -92043964 - L1MD2 LINE L1 -2849 3297 2171 955 182 80 19 chr11 58739593 58739640 -92043913 + L1MDa LINE L1 2028 2071 -4469 2185 119 3 0 chr11 58739640 58739943 -92043610 + AluSx SINE Alu 1 304 -8 955 182 80 19 chr11 58739943 58740159 -92043394 + L1MDa LINE L1 2071 2307 -4233 1202 164 24 0 chr11 58740173 58740381 -92043172 - Tigger1 DNA MER2_type -4 2414 2202 632 185 20 55 chr11 58740363 58740509 -92043044 - Tigger1 DNA MER2_type -2255 163 23 * 461 184 57 92 chr11 58740516 58740744 -92042809 + L1MDa LINE L1 2329 2548 -3992 24 0 0 0 chr11 58741147 58741171 -92042382 + AT_rich Low_complexity Low_complexity 1 24 0 450 82 68 0 chr11 58741417 58741490 -92042063 + L1PA14 LINE L1 6083 6160 -1 9377 209 13 7 chr11 58743615 58746605 -92036948 + L1PA16 LINE L1 3037 6049 -117 4427 141 65 14 chr11 58746605 58747391 -92036162 - LTR1B LTR ERV1 0 826 1 9377 209 13 7 chr11 58747391 58747501 -92036052 + L1PA16 LINE L1 6049 6157 -9 349 277 12 0 chr11 58747878 58747961 -92035592 + L2 LINE L2 3189 3272 0 254 203 0 16 chr11 58748386 58748450 -92035103 + (TG)n Simple_repeat Simple_repeat 2 64 0 407 326 82 0 chr11 58749062 58749295 -92034258 + HERV16 LTR ERVL 2527 2778 -2218 842 346 74 7 chr11 58749447 58749880 -92033673 - LTR16B LTR ERVL -2 462 1 368 212 0 12 chr11 58749885 58749970 -92033583 + L1ME3A LINE L1 5761 5844 -326 366 85 0 0 chr11 58750078 58750137 -92033416 + (TG)n Simple_repeat Simple_repeat 2 60 0 26 50 0 0 chr11 58750212 58750252 -92033301 + AT_rich Low_complexity Low_complexity 1 40 0 277 113 75 8 chr11 58750274 58750407 -92033146 + (TA)n Simple_repeat Simple_repeat 2 143 0 245 251 34 50 chr11 58750426 58750605 -92032948 + (ATGGTG)n Simple_repeat Simple_repeat 3 178 0 * 329 173 32 65 chr11 58750482 58750667 -92032886 + (ATG)n Simple_repeat Simple_repeat 1 179 0 379 149 47 0 chr11 58750679 58750786 -92032767 + (TA)n Simple_repeat Simple_repeat 2 113 0 3240 208 77 40 chr11 58752461 58753247 -92030306 + L1MD2 LINE L1 5422 6178 -181 1826 200 73 43 chr11 58753247 58753737 -92029816 - MLT1D LTR MaLR 0 505 1 3240 208 77 40 chr11 58753737 58753772 -92029781 + L1MD2 LINE L1 6178 6210 -149 2201 96 3 7 chr11 58753772 58754063 -92029490 + AluSp SINE Alu 12 301 -12 3240 208 77 40 chr11 58754063 58754142 -92029411 + L1MD2 LINE L1 6210 6356 -3 360 202 0 79 chr11 58754564 58754653 -92028900 - MLT1H LTR MaLR -393 156 75 344 291 36 9 chr11 58754809 58754919 -92028634 + L2 LINE L2 3200 3312 -1 603 259 94 102 chr11 58754959 58755361 -92028192 + MER77 LTR ERV1 132 530 -75 294 185 18 114 chr11 58755380 58755439 -92028114 - MLT1A1 LTR MaLR 0 428 365 2193 102 0 0 chr11 58755439 58755756 -92027797 + AluY SINE Alu 1 317 0 294 185 18 114 chr11 58755756 58755795 -92027758 - MLT1A1 LTR MaLR -63 365 271 2922 211 69 57 chr11 58755799 58757161 -92026392 - MLT1A1-int LTR MaLR -1 1370 16 226 241 17 17 chr11 58757161 58757173 -92026380 + MER77 LTR ERV1 527 538 -67 1184 226 105 6 chr11 58757173 58757505 -92026048 - MLT1A1 LTR MaLR 0 365 1 226 241 17 17 chr11 58757505 58757550 -92026003 + MER77 LTR ERV1 537 584 -21 316 369 58 17 chr11 58757627 58757868 -92025685 - LTR16C LTR ERVL -94 397 147 231 255 0 0 chr11 58758032 58758079 -92025474 + MLT1L LTR MaLR 206 252 -363 35 0 0 22 chr11 58759462 58759480 -92024073 + AT_rich Low_complexity Low_complexity 1 18 -27 1802 101 4 0 chr11 58759480 58759717 -92023836 + AluSq SINE Alu 1 238 -75 35 0 0 22 chr11 58759717 58759744 -92023809 + AT_rich Low_complexity Low_complexity 18 45 0 24 32 0 0 chr11 58759844 58759875 -92023678 + AT_rich Low_complexity Low_complexity 1 31 0 319 68 0 0 chr11 58759895 58759939 -92023614 + AluSq SINE Alu 243 286 -17 285 98 0 0 chr11 58759950 58759991 -92023562 + (CA)n Simple_repeat Simple_repeat 2 42 0 610 290 84 21 chr11 58760217 58760552 -92023001 - L1ME LINE L1 -492 5670 5315 25 75 0 0 chr11 58760852 58760905 -92022648 + AT_rich Low_complexity Low_complexity 1 53 0 355 342 35 26 chr11 58761404 58761635 -92021918 + L1ME LINE L1 5428 5660 -502 21 0 0 0 chr11 58761929 58761950 -92021603 + AT_rich Low_complexity Low_complexity 1 21 0 250 130 19 19 chr11 58764114 58764168 -92019385 + (TA)n Simple_repeat Simple_repeat 2 55 0 364 335 68 26 chr11 58764743 58765009 -92018544 - MER90 LTR ERV1 -53 561 285 13953 197 26 16 chr11 58765036 58769082 -92014471 + L1MA9 LINE L1 2074 6171 -377 585 230 45 21 chr11 58769079 58769316 -92014237 - L1M3c LINE L1 -5212 929 639 * 1205 304 138 16 chr11 58769327 58769834 -92013719 - L1M3c LINE L1 -5546 595 27 2916 65 23 0 chr11 58770189 58770573 -92012980 - L1PA7 LINE L1 -3 6151 5759 6577 63 20 2 chr11 58770578 58772040 -92011513 + L1PA7 LINE L1 4680 6154 0 964 243 4 58 chr11 58772274 58772517 -92011036 - MLT1E LTR MaLR -154 439 210 180 324 59 29 chr11 58772958 58773060 -92010493 + MER5A DNA MER1_type 30 134 -55 268 306 93 27 chr11 58773111 58773294 -92010259 + MIR SINE MIR 7 201 -61 372 59 0 0 chr11 58773433 58773484 -92010069 + (CA)n Simple_repeat Simple_repeat 1 51 0 210 37 0 0 chr11 58773590 58773617 -92009936 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 452 141 0 0 chr11 58773831 58773902 -92009651 - MSTA LTR MaLR 0 428 358 * 1018 200 113 17 chr11 58773887 58774117 -92009436 - MSTA LTR MaLR -176 252 1 1066 271 76 62 chr11 58774302 58774803 -92008750 + MER90 LTR ERV1 107 614 0 246 62 0 0 chr11 58775000 58775032 -92008521 + (CA)n Simple_repeat Simple_repeat 2 33 0 256 342 0 23 chr11 58775287 58775405 -92008148 - MIR SINE MIR -63 145 31 3750 256 71 38 chr11 58775520 58776174 -92007379 + L1MEc LINE L1 37 668 -5728 1522 194 0 32 chr11 58776174 58776483 -92007070 + AluJo SINE Alu 1 299 -13 3750 256 71 38 chr11 58776483 58776506 -92007047 + L1MEc LINE L1 668 689 -5707 2351 104 0 0 chr11 58776506 58776805 -92006748 - AluSg SINE Alu -11 299 1 3750 256 71 38 chr11 58776805 58777126 -92006427 + L1MEc LINE L1 689 998 -5398 2142 118 0 14 chr11 58777126 58777422 -92006131 + AluSx SINE Alu 4 295 -17 3750 256 71 38 chr11 58777422 58777922 -92005631 + L1MEc LINE L1 998 1586 -4810 938 127 0 8 chr11 58778200 58778334 -92005219 - AluSq/x SINE Alu -180 133 1 814 159 7 14 chr11 58778706 58778844 -92004709 - FRAM SINE Alu -20 156 20 252 86 0 0 chr11 58779291 58779326 -92004227 - L1MA6 LINE L1 -141 6159 6125 1158 86 0 0 chr11 58779327 58779489 -92004064 + L1MA6 LINE L1 6139 6300 0 376 297 114 34 chr11 58780152 58780327 -92003226 - MIR SINE MIR -59 203 15 25 51 0 0 chr11 58780414 58780453 -92003100 + AT_rich Low_complexity Low_complexity 1 39 0 1370 173 119 0 chr11 58780912 58781172 -92002381 - AluJo SINE Alu -9 293 3 1451 158 26 164 chr11 58781177 58781678 -92001875 - L1MA7 LINE L1 -5 6286 5855 299 281 46 46 chr11 58782498 58782651 -92000902 + MER103 DNA DNA 1 153 -13 240 232 14 14 chr11 58782697 58782766 -92000787 + HsTC2 DNA Tc2 11 79 -1819 1464 125 159 51 chr11 58782861 58783157 -92000396 - MER54B LTR ERVL -7 786 459 1036 190 0 0 chr11 58783163 58783326 -92000227 - MER54B LTR ERVL -630 163 1 1573 208 23 7 chr11 58783682 58783990 -91999563 + L1MA8 LINE L1 469 781 -6708 2987 206 23 20 chr11 58784031 58784656 -91998897 + L1MA8 LINE L1 3342 3970 -3595 3686 54 4 0 chr11 58784656 58785119 -91998434 - L1PA5 LINE L1 -1 6153 5689 2987 206 23 20 chr11 58785119 58785387 -91998166 + L1MA8 LINE L1 3970 4236 -3329 2158 183 139 8 chr11 58785382 58785913 -91997640 + L1MA8 LINE L1 5744 6344 -1221 * 8254 182 14 4 chr11 58785908 58787503 -91996050 + L1PA15 LINE L1 3682 5291 -855 41572 61 2 4 chr11 58787506 58793676 -91989877 + L1PA5 LINE L1 1 6154 0 5497 121 24 2 chr11 58793669 58794528 -91989025 + L1PA15 LINE L1 5281 6158 -7 * 21 0 0 0 chr11 58794529 58794550 -91989003 + AT_rich Low_complexity Low_complexity 1 21 0 272 268 10 72 chr11 58794571 58794668 -91988885 - MER5B DNA MER1_type -34 144 54 1034 257 119 21 chr11 58794849 58795176 -91988377 + LTR40b LTR ERVL 1 359 -103 5480 161 15 24 chr11 58795188 58796593 -91986960 + L1MA8 LINE L1 6325 7710 0 1945 167 27 74 chr11 58796918 58797325 -91986228 - MLT1B LTR MaLR -2 388 1 285 293 61 0 chr11 58797741 58797840 -91985713 - MIR SINE MIR -4 258 154 197 258 48 32 chr11 58797844 58797906 -91985647 + MIR SINE MIR 183 245 -17 414 299 104 15 chr11 58797919 58798053 -91985500 - MIR SINE MIR -113 149 4 292 311 61 27 chr11 58798922 58799070 -91984483 - MIR SINE MIR -33 229 77 377 340 35 14 chr11 58799226 58799370 -91984183 - L2 LINE L2 0 3272 3126 244 348 22 7 chr11 58799793 58799928 -91983625 + MIR SINE MIR 98 234 -28 258 269 15 0 chr11 58799928 58799995 -91983558 + MLT1J LTR MaLR 286 353 -158 2520 166 70 20 chr11 58800819 58801276 -91982277 + MLT2B1 LTR ERVL 1 480 -40 189 0 0 0 chr11 58801277 58801298 -91982255 + (TG)n Simple_repeat Simple_repeat 2 22 0 433 70 14 14 chr11 58801349 58801420 -91982133 + (TA)n Simple_repeat Simple_repeat 1 71 0 1971 121 3 3 chr11 58801585 58801894 -91981659 - AluSg SINE Alu 0 309 1 1904 274 47 38 chr11 58801907 58802594 -91980959 - L1M4b LINE L1 -6145 714 22 288 157 20 0 chr11 58802732 58802783 -91980770 + Tigger1 DNA MER2_type 1998 2049 -369 722 121 0 0 chr11 58802805 58802904 -91980649 - AluSg/x SINE Alu -11 301 203 1374 227 18 57 chr11 58802958 58803451 -91980102 + L1M4 LINE L1 1022 1495 -5047 1197 255 91 10 chr11 58803474 58803882 -91979671 + MER20B DNA MER1_type 277 717 -66 304 193 40 127 chr11 58805061 58805211 -91978342 + L1MC4 LINE L1 6615 6751 -1291 1157 251 54 88 chr11 58805213 58805833 -91977720 - L2 LINE L2 -1 3312 2702 207 0 0 0 chr11 58805836 58805859 -91977694 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2119 106 7 7 chr11 58805861 58806143 -91977410 - AluSg SINE Alu -28 282 1 777 306 149 22 chr11 58806175 58806630 -91976923 - MLT1K LTR MaLR -73 515 3 201 286 99 0 chr11 58806890 58806981 -91976572 + MIR3 SINE MIR 102 201 -7 186 344 17 78 chr11 58807800 58808030 -91975523 + L2 LINE L2 2898 3113 -159 1378 231 68 74 chr11 58808214 58808867 -91974686 + MLT1F1 LTR MaLR 1 567 0 22 0 0 0 chr11 58809186 58809208 -91974345 + AT_rich Low_complexity Low_complexity 1 22 0 354 296 33 17 chr11 58809897 58810018 -91973535 + MIR SINE MIR 21 151 -57 2445 194 77 81 chr11 58810042 58810695 -91972858 + MLT1E1 LTR MaLR 5 654 0 512 311 7 0 chr11 58810701 58810836 -91972717 + MER117 DNA MER1_type 11 146 -51 248 237 0 17 chr11 58810844 58810903 -91972650 - MLT1K LTR MaLR -4 584 527 3167 144 16 14 chr11 58810911 58811213 -91972340 - LTR42 LTR ERVL 0 495 190 2383 103 47 33 chr11 58811213 58811572 -91971981 - THE1B LTR MaLR 0 364 1 3167 144 16 14 chr11 58811572 58811763 -91971790 - LTR42 LTR ERVL -305 190 1 389 262 117 0 chr11 58811787 58811890 -91971663 - L2 LINE L2 -3 3310 3196 271 235 0 44 chr11 58811895 58811963 -91971590 - MLT1K LTR MaLR -77 511 447 281 287 56 42 chr11 58812989 58813132 -91970421 + MIR SINE MIR 54 198 -64 942 233 0 93 chr11 58813276 58813555 -91969998 + MIR SINE MIR 10 262 0 247 337 82 75 chr11 58813558 58813813 -91969740 - L2 LINE L2 0 3272 3016 206 261 0 0 chr11 58815856 58815902 -91967651 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 569 322 28 0 chr11 58815958 58816138 -91967415 - MER91A DNA MER1_type -11 185 1 451 319 129 4 chr11 58816957 58817189 -91966364 + MIR SINE MIR 2 262 0 842 329 111 57 chr11 58817190 58818362 -91965191 - L2 LINE L2 0 3313 2064 340 21 0 42 chr11 58818362 58818410 -91965143 + L1PA3 LINE L1 6110 6155 0 842 329 111 57 chr11 58818410 58818541 -91965012 - L2 LINE L2 -1249 2064 1941 1635 278 57 40 chr11 58819258 58819887 -91963666 + L2 LINE L2 34 673 -2641 1426 269 19 9 chr11 58819895 58820319 -91963234 - L1PA12 LINE L1 -6138 1443 1016 2644 244 88 53 chr11 58820319 58820685 -91962868 + L2 LINE L2 1900 2252 -1062 2216 77 10 17 chr11 58820685 58820983 -91962570 - AluSp SINE Alu -17 296 1 2644 244 88 53 chr11 58820983 58821577 -91961976 + L2 LINE L2 2252 2894 -420 536 298 161 42 chr11 58821544 58821829 -91961724 + L2 LINE L2 2995 3313 0 * 276 244 20 65 chr11 58821827 58821939 -91961614 - MIR SINE MIR -75 133 22 * 247 271 0 0 chr11 58823520 58823590 -91959963 - MLT1K LTR MaLR -23 565 496 554 229 14 124 chr11 58823609 58823827 -91959726 + MIR SINE MIR 9 202 -60 1986 204 43 28 chr11 58823827 58824153 -91959400 + MLT1C LTR MaLR 1 338 -129 1286 211 35 105 chr11 58824153 58824417 -91959136 - MLT1A2 LTR MaLR 0 374 146 2295 97 3 3 chr11 58824417 58824726 -91958827 - AluSc SINE Alu 0 309 1 1286 211 35 105 chr11 58824726 58824860 -91958693 - MLT1A2 LTR MaLR -228 146 4 1986 204 43 28 chr11 58824860 58824993 -91958560 + MLT1C LTR MaLR 338 467 0 240 293 0 0 chr11 58825000 58825058 -91958495 + MIR SINE MIR 205 262 0 1268 280 93 10 chr11 58825066 58825462 -91958091 - MLT1K LTR MaLR -114 474 46 268 242 121 40 chr11 58825608 58825732 -91957821 - LTR67 LTR ERVL -19 538 405 468 278 64 17 chr11 58826644 58826817 -91956736 - MIR SINE MIR -1 261 81 468 149 11 0 chr11 58826997 58827091 -91956462 + L1MB3 LINE L1 6089 6183 0 497 273 56 31 chr11 58827104 58827265 -91956288 - MIR SINE MIR -27 235 71 279 261 9 17 chr11 58827271 58827386 -91956167 + (TTA)n Simple_repeat Simple_repeat 2 115 0 863 236 25 33 chr11 58827386 58827628 -91955925 + MIR SINE MIR 23 262 0 209 189 122 67 chr11 58827619 58827709 -91955844 - MIR SINE MIR -103 159 65 * 286 340 48 19 chr11 58828101 58828204 -91955349 - MER5A DNA MER1_type -81 108 3 211 283 22 54 chr11 58828204 58828296 -91955257 - MIR SINE MIR -152 110 22 27 29 0 0 chr11 58828328 58828362 -91955191 + AT_rich Low_complexity Low_complexity 1 34 0 230 306 88 25 chr11 58828368 58828528 -91955025 + L1ME4a LINE L1 5930 6099 -22 23 0 0 0 chr11 58828562 58828585 -91954968 + AT_rich Low_complexity Low_complexity 1 23 0 396 211 55 9 chr11 58828998 58829107 -91954446 + L1ME2 LINE L1 5712 5825 -339 253 319 0 0 chr11 58829197 58829266 -91954287 + L3 LINE CR1 434 502 -1075 346 285 29 7 chr11 58829451 58829588 -91953965 - Tigger8 DNA MER2_type -117 549 410 538 321 169 62 chr11 58830052 58830183 -91953370 + L3 LINE CR1 687 803 -774 621 221 26 0 chr11 58830183 58830438 -91953115 + FLAM_A SINE Alu 1 258 0 538 321 169 62 chr11 58830438 58831107 -91952446 + L3 LINE CR1 803 1576 -1 23 0 0 0 chr11 58831755 58831778 -91951775 + AT_rich Low_complexity Low_complexity 1 23 0 261 273 102 0 chr11 58832346 58832434 -91951119 + MLT1J LTR MaLR 136 232 -279 492 187 187 11 chr11 58833030 58833217 -91950336 - MER113 DNA MER1_type? -297 224 5 2061 293 67 20 chr11 58833617 58833736 -91949817 - L2 LINE L2 -10 3303 3191 2145 192 14 0 chr11 58833736 58834096 -91949457 + MLT1A1 LTR MaLR 1 365 0 2061 293 67 20 chr11 58834096 58834586 -91948967 - L2 LINE L2 -122 3191 2623 2288 91 3 0 chr11 58834586 58834882 -91948671 + AluSg SINE Alu 1 297 -13 2061 293 67 20 chr11 58834882 58835160 -91948393 - L2 LINE L2 -690 2623 2360 5149 237 29 75 chr11 58835166 58835890 -91947663 - L1MEc LINE L1 -4578 1818 1062 1916 158 0 0 chr11 58835890 58836174 -91947379 + AluSx SINE Alu 1 284 -28 5149 237 29 75 chr11 58836174 58836478 -91947075 - L1MEc LINE L1 -5334 1062 746 272 47 0 23 chr11 58836478 58836521 -91947032 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5149 237 29 75 chr11 58836521 58837338 -91946215 - L1MEc LINE L1 -5650 746 57 317 159 63 0 chr11 58837339 58837402 -91946151 - L2 LINE L2 -955 2359 2293 * 772 240 7 0 chr11 58837394 58837540 -91946013 - MER5A DNA MER1_type -37 152 6 375 344 69 42 chr11 58837765 58838053 -91945500 + L2 LINE L2 2882 3177 -95 1891 252 96 8 chr11 58838131 58838745 -91944808 + MER20B DNA MER1_type 50 717 -66 595 291 43 47 chr11 58839094 58839352 -91944201 + MIR SINE MIR 3 259 -3 453 159 0 0 chr11 58840477 58840546 -91943007 + Tigger2 DNA MER2_type 1 69 -2649 * 2721 131 32 5 chr11 58840535 58840969 -91942584 + Tigger2 DNA MER2_type 2273 2718 0 2113 131 3 19 chr11 58840977 58841290 -91942263 + AluSx SINE Alu 1 308 -4 429 324 178 16 chr11 58841547 58841910 -91941643 + L2 LINE L2 2774 3199 -73 23 0 0 0 chr11 58842108 58842131 -91941422 + AT_rich Low_complexity Low_complexity 1 23 0 801 229 64 34 chr11 58842197 58842463 -91941090 - Charlie8 DNA MER1_type -2141 276 3 252 323 63 27 chr11 58842869 58843035 -91940518 + MIR SINE MIR 16 183 -60 2793 103 5 16 chr11 58843312 58843691 -91939862 + THE1C LTR MaLR 1 375 0 335 352 9 0 chr11 58843851 58843956 -91939597 - MIR SINE MIR -156 106 1 270 258 7 86 chr11 58844049 58844200 -91939353 - L2 LINE L2 -95 3218 3080 549 283 131 0 chr11 58844447 58844638 -91938915 - MIR SINE MIR -15 247 32 1734 149 61 76 chr11 58844744 58844991 -91938562 - MLT1B LTR MaLR 0 390 150 1720 141 47 17 chr11 58844991 58845288 -91938265 - AluSx SINE Alu -6 306 1 1734 149 61 76 chr11 58845288 58845436 -91938117 - MLT1B LTR MaLR -240 150 1 6296 81 8 17 chr11 58845793 58846678 -91936875 + L1PA13 LINE L1 5286 6162 -1 254 344 0 0 chr11 58846802 58846895 -91936658 + GA-rich Low_complexity Low_complexity 2 94 0 305 226 51 109 chr11 58847245 58847382 -91936171 - MER103 DNA DNA -1 165 37 2159 171 21 3 chr11 58847886 58848265 -91935288 + MLT1B LTR MaLR 5 390 0 507 331 62 8 chr11 58848397 58848657 -91934896 + MLT1L LTR MaLR 172 445 -170 1968 221 99 87 chr11 58848932 58849056 -91934497 + MER21B LTR ERV1 1 122 -741 2222 118 0 16 chr11 58849056 58849369 -91934184 - AluY SINE Alu -3 308 1 1968 221 99 87 chr11 58849369 58850013 -91933540 + MER21B LTR ERV1 122 778 -85 233 256 168 15 chr11 58850082 58850219 -91933334 - MIR SINE MIR -92 170 13 27 29 0 0 chr11 58850622 58850656 -91932897 + AT_rich Low_complexity Low_complexity 1 34 0 198 0 0 0 chr11 58850907 58850929 -91932624 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 196 167 0 33 chr11 58851077 58851137 -91932416 + CT-rich Low_complexity Low_complexity 1 58 0 323 212 71 18 chr11 58852671 58852784 -91930769 - MIR SINE MIR -68 194 76 22 0 0 0 chr11 58853935 58853957 -91929596 + AT_rich Low_complexity Low_complexity 1 22 0 2222 109 0 28 chr11 58854165 58854486 -91929067 + AluSx SINE Alu 1 312 0 1211 286 88 11 chr11 58854620 58854997 -91928556 - MLT1I LTR MaLR -3 406 1 708 251 23 23 chr11 58855557 58855772 -91927781 + MIR SINE MIR 43 257 -5 3472 121 26 0 chr11 58856041 58856569 -91926984 - L1PA14 LINE L1 0 6161 5620 383 311 19 0 chr11 58856941 58857044 -91926509 + MIR3 SINE MIR 76 180 -28 437 296 64 39 chr11 58857200 58857403 -91926150 - MIR SINE MIR -23 239 32 187 274 55 27 chr11 58858196 58858269 -91925284 - L2 LINE L2 -18 3254 3180 260 218 0 0 chr11 58858548 58858603 -91924950 - L2 LINE L2 -281 2991 2937 189 239 109 109 chr11 58859507 58859754 -91923799 + L2 LINE L2 2864 3110 -162 404 225 12 0 chr11 58860011 58860091 -91923462 + Tigger1 DNA MER2_type 1 81 -2337 276 83 0 0 chr11 58860088 58860124 -91923429 + Tigger1 DNA MER2_type 560 595 -1823 * 1116 156 0 12 chr11 58860124 58860297 -91923256 + FRAM SINE Alu 1 168 -8 12848 139 14 39 chr11 58860311 58860391 -91923162 - Tigger1 DNA MER2_type -277 2141 2061 2230 113 0 0 chr11 58860391 58860682 -91922871 + AluSg SINE Alu 1 291 -19 12848 139 14 39 chr11 58860682 58860938 -91922615 - Tigger1 DNA MER2_type -357 2061 1800 2238 115 3 10 chr11 58860938 58861243 -91922310 + AluSx SINE Alu 1 303 -9 12848 139 14 39 chr11 58861243 58863101 -91920452 - Tigger1 DNA MER2_type -618 1800 1 633 250 44 48 chr11 58863148 58863464 -91920089 + L1MEc LINE L1 1971 2285 -4111 587 261 54 50 chr11 58863474 58863715 -91919838 + L1M4b LINE L1 -302 4294967235 -6607 695 175 42 71 chr11 58864129 58864433 -91919120 + MLT1E2 LTR MaLR 1 369 -136 1852 134 11 0 chr11 58864433 58864694 -91918859 + AluSq SINE Alu 1 264 -49 626 128 0 9 chr11 58864705 58864814 -91918739 + (GGA)n Simple_repeat Simple_repeat 3 110 0 437 195 203 8 chr11 58864814 58864942 -91918611 + MLT1E2 LTR MaLR 353 505 0 1753 224 46 56 chr11 58864954 58865670 -91917883 + L1M4b LINE L1 875 1593 -5041 2055 171 53 37 chr11 58865713 58866168 -91917385 - MLT1C LTR MaLR 0 467 6 784 342 55 38 chr11 58866278 58866784 -91916769 - REP3 LTR ERV -47 515 1 1181 248 64 43 chr11 58866795 58866840 -91916713 + L1M4b LINE L1 1525 1568 -5078 1983 97 0 0 chr11 58866840 58867118 -91916435 + L1MA1 LINE L1 6019 6296 -6 1181 248 64 43 chr11 58867118 58867272 -91916281 + L1M4b LINE L1 1568 1717 -4929 1683 169 3 35 chr11 58867272 58867586 -91915967 + AluJb SINE Alu 1 304 -8 1181 248 64 43 chr11 58867586 58867945 -91915608 + L1M4b LINE L1 1717 2096 -4550 24 53 0 0 chr11 58867972 58868010 -91915543 + AT_rich Low_complexity Low_complexity 1 38 0 243 269 26 92 chr11 58868010 58868315 -91915238 + L1M4b LINE L1 2238 2522 -4303 502 279 23 0 chr11 58868333 58868505 -91915048 + L1M4b LINE L1 2681 2856 -3788 273 114 114 0 chr11 58868641 58868711 -91914842 - MIR SINE MIR -48 214 137 1063 310 125 14 chr11 58868792 58869597 -91913956 - L2 LINE L2 -36 3277 2375 183 329 53 13 chr11 58869712 58869788 -91913765 - L2 LINE L2 -67 3205 3127 387 333 68 61 chr11 58870117 58870676 -91912877 - L2 LINE L2 -530 2784 2222 647 284 16 11 chr11 58870691 58870881 -91912672 - MIR SINE MIR -27 235 45 518 278 40 17 chr11 58871029 58871202 -91912351 - MIR3 SINE MIR -12 196 20 457 303 162 15 chr11 58871309 58871642 -91911911 + L2 LINE L2 2804 3189 -124 2149 96 46 0 chr11 58871642 58871924 -91911629 + AluSc SINE Alu 1 295 -14 208 227 0 0 chr11 58872007 58872051 -91911502 + GA-rich Low_complexity Low_complexity 4 47 0 356 308 0 0 chr11 58872952 58873072 -91910481 - MIR SINE MIR -59 203 84 337 325 49 8 chr11 58873687 58873810 -91909743 - MIR SINE MIR -56 152 25 867 214 78 15 chr11 58873834 58874040 -91909513 + MER20 DNA MER1_type 1 219 0 198 310 48 14 chr11 58874186 58874331 -91909222 + L2 LINE L2 2918 3067 -205 776 281 0 47 chr11 58874436 58874692 -91908861 + MIR SINE MIR 18 261 -1 826 207 56 28 chr11 58875067 58875280 -91908273 - MER20 DNA MER1_type 0 219 1 657 193 82 106 chr11 58875302 58875509 -91908044 + MER106B DNA MER1_type 35 1059 0 300 343 109 0 chr11 58876023 58876198 -91907355 - MIR SINE MIR -42 220 27 239 326 10 10 chr11 58876887 58876985 -91906568 + MIR3 SINE MIR 62 159 -49 728 166 0 7 chr11 58877133 58877278 -91906275 + GA-rich Low_complexity Low_complexity 3 146 0 495 279 50 6 chr11 58877327 58877506 -91906047 - MIR SINE MIR -72 190 4 1047 293 88 14 chr11 58878365 58878795 -91904758 + MLT1J LTR MaLR 5 466 -45 2380 50 0 0 chr11 58879086 58879369 -91904184 + L1P3 LINE L1 5519 5801 -371 629 262 75 0 chr11 58880714 58880901 -91902652 - MIR SINE MIR -1 261 61 237 128 0 0 chr11 58881310 58881357 -91902196 + (CATA)n Simple_repeat Simple_repeat 2 48 0 464 76 86 14 chr11 58881383 58881602 -91901951 + (TAGA)n Simple_repeat Simple_repeat 1 234 0 225 321 0 0 chr11 58881946 58882030 -91901523 - MIR SINE MIR -4 258 175 2195 126 0 7 chr11 58882203 58882512 -91901041 + AluSx SINE Alu 1 307 -5 335 188 62 12 chr11 58882512 58882592 -91900961 + MLT1J2 LTR MaLR 367 450 0 224 136 91 0 chr11 58882595 58882639 -91900914 + MIR SINE MIR 159 206 -56 331 241 13 0 chr11 58882953 58883032 -91900521 - L3 LINE CR1 -5 1572 1493 579 297 43 0 chr11 58883252 58883437 -91900116 + MIR SINE MIR 60 252 -10 542 303 26 20 chr11 58884866 58885061 -91898492 + MIR SINE MIR 47 242 -20 337 253 0 0 chr11 58886025 58886104 -91897449 - L2 LINE L2 -1 3312 3234 228 161 48 0 chr11 58886137 58886199 -91897354 + (TTAAA)n Simple_repeat Simple_repeat 3 67 0 302 326 59 45 chr11 58886712 58886933 -91896620 + MIR SINE MIR 3 226 -36 823 306 143 25 chr11 58886968 58887390 -91896163 - MLT1K LTR MaLR -10 578 83 2218 113 0 23 chr11 58887390 58887700 -91895853 + AluSg SINE Alu 1 303 -7 823 306 143 25 chr11 58887700 58887793 -91895760 - MLT1K LTR MaLR -505 83 2 201 74 0 0 chr11 58888168 58888195 -91895358 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 990 252 107 16 chr11 58888443 58888753 -91894800 + MER102b DNA MER1_type 1 338 -3 252 57 94 0 chr11 58888804 58888857 -91894696 + (TTATA)n Simple_repeat Simple_repeat 5 62 0 385 310 32 59 chr11 58889197 58889384 -91894169 + L2 LINE L2 3090 3271 -1 216 0 0 0 chr11 58889630 58889654 -91893899 + (A)n Simple_repeat Simple_repeat 1 24 0 815 265 4 23 chr11 58889813 58890070 -91893483 + L2 LINE L2 2863 3114 -199 342 302 75 81 chr11 58890123 58890431 -91893122 - MLT1K LTR MaLR -144 444 139 420 258 57 8 chr11 58890462 58890586 -91892967 - MLT1K LTR MaLR -371 217 88 312 288 0 18 chr11 58891517 58891628 -91891925 - MIR3 SINE MIR -39 169 61 479 237 166 19 chr11 58892168 58892379 -91891174 + MIR SINE MIR 4 245 -17 186 332 37 16 chr11 58893028 58893172 -91890381 - MIR SINE MIR -67 141 2 2433 86 47 36 chr11 58893199 58893401 -91890152 - THE1B LTR MaLR 0 364 155 2346 104 0 13 chr11 58893401 58893709 -91889844 + AluSq SINE Alu 2 305 -8 2433 86 47 36 chr11 58893709 58893866 -91889687 - THE1B LTR MaLR -209 155 1 388 293 8 16 chr11 58894211 58894334 -91889219 + MIR SINE MIR 24 145 -117 2062 108 4 0 chr11 58894366 58894634 -91888919 + AluSx SINE Alu 21 289 -23 342 340 26 26 chr11 58894717 58894908 -91888645 + MIR SINE MIR 66 256 -6 38 39 0 0 chr11 58895773 58895825 -91887728 + AT_rich Low_complexity Low_complexity 1 52 0 827 169 0 0 chr11 58895825 58895955 -91887598 + FLAM_C SINE Alu 1 130 -3 2813 146 47 8 chr11 58895966 58896452 -91887101 - L1MA7 LINE L1 -21 6270 5766 2660 80 3 28 chr11 58896455 58896819 -91886734 - THE1A LTR MaLR 0 355 1 10409 94 7 18 chr11 58896819 58898032 -91885521 - THE1A-int LTR MaLR 0 1580 385 1783 126 4 15 chr11 58898032 58898295 -91885258 + AluSx SINE Alu 53 312 0 10409 94 7 18 chr11 58898295 58898676 -91884877 - THE1A-int LTR MaLR -1195 385 1 1087 80 0 0 chr11 58898676 58898813 -91884740 - THE1A LTR MaLR 0 355 219 736 139 0 16 chr11 58898813 58898935 -91884618 - L1MA7 LINE L1 -525 5766 5647 365 271 50 60 chr11 58898936 58899135 -91884418 + L2 LINE L2 3107 3303 -10 267 299 0 52 chr11 58899253 58899330 -91884223 + MIR SINE MIR 54 126 -136 * 442 185 115 54 chr11 58899319 58899449 -91884104 + L2 LINE L2 3105 3242 -71 200 303 112 0 chr11 58899515 58899604 -91883949 + MIR SINE MIR 159 257 -5 347 365 62 0 chr11 58900036 58900181 -91883372 - L2 LINE L2 0 3272 3119 341 311 0 10 chr11 58900606 58900709 -91882844 + (CA)n Simple_repeat Simple_repeat 2 103 0 234 0 0 0 chr11 58901071 58901097 -91882456 + (TTA)n Simple_repeat Simple_repeat 1 26 0 1717 181 0 9 chr11 58901225 58901540 -91882013 - AluJo SINE Alu 0 312 1 649 295 26 0 chr11 58901581 58901774 -91881779 - MIR SINE MIR 0 262 65 2055 215 51 23 chr11 58902228 58902702 -91880851 - MLT1E3 LTR MaLR 0 624 138 1753 220 77 14 chr11 58902768 58903212 -91880341 - MLT1D LTR MaLR 0 505 1 3333 74 14 5 chr11 58903764 58904209 -91879344 - L1PA13 LINE L1 -5 6158 5710 186 43 0 0 chr11 58904315 58904338 -91879215 + (CAT)n Simple_repeat Simple_repeat 3 25 0 316 274 94 26 chr11 58904496 58904613 -91878940 - L1 LINE L1 -1635 4511 4387 276 284 11 11 chr11 58905141 58905229 -91878324 + GA-rich Low_complexity Low_complexity 3 90 0 443 207 0 0 chr11 58905350 58905437 -91878116 - MER103 DNA DNA -69 97 11 351 290 65 16 chr11 58905804 58905928 -91877625 - MIR SINE MIR -41 221 92 24 32 0 0 chr11 58905972 58906003 -91877550 + AT_rich Low_complexity Low_complexity 1 31 0 184 104 0 167 chr11 58906324 58906372 -91877181 - L2 LINE L2 -13 3300 3261 343 324 108 0 chr11 58906610 58906712 -91876841 + L2 LINE L2 3201 3313 0 309 118 0 0 chr11 58907714 58907765 -91875788 + (GGGA)n Simple_repeat Simple_repeat 1 51 0 192 97 0 0 chr11 58908543 58908574 -91874979 + (TG)n Simple_repeat Simple_repeat 1 31 0 362 354 0 0 chr11 58910839 58910966 -91872587 - MIR SINE MIR -63 145 47 211 315 0 19 chr11 58910979 58911033 -91872520 - MIR SINE MIR -133 75 23 705 246 109 11 chr11 58911172 58911355 -91872198 - MIR SINE MIR -21 241 41 218 292 36 77 chr11 58912161 58912329 -91871224 - MIR3 SINE MIR -7 201 41 2399 87 0 3 chr11 58913082 58913392 -91870161 - AluSc SINE Alu 0 309 1 34 65 0 0 chr11 58913767 58913829 -91869724 + AT_rich Low_complexity Low_complexity 1 62 0 878 253 16 16 chr11 58913842 58914036 -91869517 - MIR SINE MIR -60 202 9 734 280 128 91 chr11 58914105 58914783 -91868770 - L2 LINE L2 -4 3309 2591 390 266 139 29 chr11 58914785 58914958 -91868595 + MIR SINE MIR 60 251 -11 288 264 75 19 chr11 58915424 58915530 -91868023 - L2 LINE L2 -20 3293 3182 453 279 26 32 chr11 58916322 58916476 -91867077 - MIR SINE MIR -16 246 94 507 191 66 44 chr11 58916599 58916735 -91866818 - MIR SINE MIR -36 226 88 205 269 179 64 chr11 58916928 58917084 -91866469 - MIR SINE MIR -56 206 33 579 101 0 0 chr11 58918548 58918627 -91864926 - MADE1 DNA Mariner -1 79 1 180 217 0 0 chr11 58919543 58919589 -91863964 + GA-rich Low_complexity Low_complexity 2 47 0 279 54 0 0 chr11 58920620 58920657 -91862896 + (ATG)n Simple_repeat Simple_repeat 2 38 0 962 222 35 5 chr11 58920657 58920855 -91862698 - MIR SINE MIR -11 251 48 2573 101 20 0 chr11 58920956 58921304 -91862249 - THE1A LTR MaLR 0 355 1 550 281 91 1 chr11 58921476 58921793 -91861760 - MLT1J2 LTR MaLR -57 393 7 1785 149 0 7 chr11 58923407 58923703 -91859850 + AluSq SINE Alu 1 294 -19 302 210 61 140 chr11 58923786 58924015 -91859538 - L2 LINE L2 -1 3312 3102 * 867 275 82 48 chr11 58924009 58924409 -91859144 - L2 LINE L2 -456 2858 2445 859 282 70 12 chr11 58925133 58925374 -91858179 + MIR SINE MIR 8 262 0 376 278 19 28 chr11 58925370 58925478 -91858075 - MIR SINE MIR -105 157 51 * 736 238 216 58 chr11 58925535 58926023 -91857530 + MLT1H1 LTR MaLR 1 555 0 2067 128 0 0 chr11 58926477 58926775 -91856778 + AluSq SINE Alu 1 298 -15 3539 124 13 9 chr11 58927351 58927876 -91855677 + MER1A DNA MER1_type 1 527 0 274 316 82 10 chr11 58928237 58928335 -91855218 + L2 LINE L2 3168 3272 0 409 269 224 13 chr11 58928424 58928580 -91854973 - MER5A DNA MER1_type 0 189 1 299 350 91 44 chr11 58929089 58929520 -91854033 - L2 LINE L2 -5 3267 2817 275 354 21 0 chr11 58929659 58929755 -91853798 - L2 LINE L2 0 3272 3175 348 347 87 0 chr11 58929833 58929983 -91853570 + MIR SINE MIR 80 242 -20 278 290 0 0 chr11 58929998 58930067 -91853486 + MIR3 SINE MIR 125 193 -15 422 338 64 14 chr11 58930440 58930659 -91852894 - MIR SINE MIR 0 262 33 435 303 0 15 chr11 58931510 58931642 -91851911 + MIR3 SINE MIR 73 202 -6 374 188 235 54 chr11 58931650 58931799 -91851754 + MIR3 SINE MIR 15 190 -18 367 241 68 43 chr11 58931865 58932027 -91851526 + L2 LINE L2 2548 2713 -601 1580 167 0 31 chr11 58932027 58932321 -91851232 + AluJo SINE Alu 1 285 -27 989 202 28 65 chr11 58932827 58933075 -91850478 + MIR SINE MIR 8 246 -16 504 325 41 33 chr11 58933300 58933543 -91850010 + Charlie8 DNA MER1_type 21 265 -2152 769 155 0 9 chr11 58933705 58933821 -91849732 - FLAM_C SINE Alu -27 116 2 1523 91 178 8 chr11 58934293 58934557 -91848996 + AluSq SINE Alu 1 305 0 227 282 57 40 chr11 58934628 58934752 -91848801 + MIR3 SINE MIR 63 188 -20 275 238 0 32 chr11 58937046 58937109 -91846444 + MIR SINE MIR 87 147 -61 429 54 0 0 chr11 58939446 58939502 -91844051 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 277 293 0 13 chr11 58939609 58939684 -91843869 + MER5B DNA MER1_type 26 99 -79 710 234 18 69 chr11 58940036 58940254 -91843299 - MIR SINE MIR -41 221 15 224 136 34 34 chr11 58940393 58940452 -91843101 + GA-rich Low_complexity Low_complexity 1 59 0 476 207 11 17 chr11 58940464 58940643 -91842910 + GA-rich Low_complexity Low_complexity 2 179 0 418 174 28 7 chr11 58940660 58940804 -91842749 + GA-rich Low_complexity Low_complexity 1 147 0 634 166 29 0 chr11 58940835 58941010 -91842543 + GA-rich Low_complexity Low_complexity 1 180 0 269 198 10 0 chr11 58941024 58941120 -91842433 + GA-rich Low_complexity Low_complexity 2 98 0 212 264 0 0 chr11 58941371 58941424 -91842129 + (TTCA)n Simple_repeat Simple_repeat 2 54 0 266 345 159 7 chr11 58941424 58941569 -91841984 - L2 LINE L2 0 3272 3106 243 125 0 0 chr11 58941943 58941983 -91841570 + (T)n Simple_repeat Simple_repeat 1 40 0 356 252 17 61 chr11 58942445 58942560 -91840993 - L2 LINE L2 0 3313 3204 * 486 220 6 115 chr11 58942557 58942739 -91840814 - MIR3 SINE MIR -34 174 13 1829 142 20 102 chr11 58942860 58943254 -91840299 - L1MC3 LINE L1 -8 7777 7416 207 321 48 36 chr11 58943279 58943363 -91840190 - L2 LINE L2 -35 3237 3153 194 289 0 19 chr11 58943924 58943976 -91839577 + L2 LINE L2 3221 3271 -1 554 184 0 10 chr11 58944683 58944786 -91838767 + AluSg/x SINE Alu 200 301 -9 2426 132 0 5 chr11 58945565 58945937 -91837616 - L1PB1 LINE L1 0 6151 5782 247 292 0 0 chr11 58945955 58946044 -91837509 - L1MC4 LINE L1 -1339 6703 6615 * 273 278 0 0 chr11 58945969 58946059 -91837494 + L1MC4 LINE L1 6614 6703 -1339 273 222 0 0 chr11 58946059 58946122 -91837431 + (TA)n Simple_repeat Simple_repeat 2 64 0 3899 80 2 2 chr11 58946122 58946660 -91836893 - L1P5 LINE L1 -360 5791 5254 335 309 188 7 chr11 58946720 58946869 -91836684 - MER5A DNA MER1_type 0 189 14 294 338 15 29 chr11 58946912 58947048 -91836505 + MIR SINE MIR 123 256 -6 27 0 0 0 chr11 58947323 58947350 -91836203 + AT_rich Low_complexity Low_complexity 1 27 0 313 298 19 0 chr11 58947457 58947561 -91835992 + MIR3 SINE MIR 55 160 -48 2556 315 151 39 chr11 58947966 58949241 -91834312 - L2 LINE L2 0 3313 2182 1689 142 0 0 chr11 58949241 58949518 -91834035 + AluSx SINE Alu 35 311 0 2556 315 151 39 chr11 58949518 58950718 -91832835 - L2 LINE L2 -1131 2182 535 380 272 68 52 chr11 58950718 58950909 -91832644 - MER91A DNA MER1_type -2 194 1 2556 315 151 39 chr11 58950909 58950985 -91832568 - L2 LINE L2 -2778 535 469 508 247 82 19 chr11 58950954 58951112 -91832441 - MIR3 SINE MIR -23 185 18 * 544 256 39 39 chr11 58951120 58951300 -91832253 + MARNA DNA Mariner 31 210 -376 319 185 33 54 chr11 58951623 58951715 -91831838 - LTR67 LTR ERVL -29 528 439 552 287 61 49 chr11 58951796 58952043 -91831510 - LTR67 LTR ERVL -258 299 50 254 254 48 0 chr11 58952705 58952768 -91830785 + MIR SINE MIR 111 176 -86 193 331 103 22 chr11 58952904 58953088 -91830465 - L2 LINE L2 -247 3025 2827 512 329 67 24 chr11 58953356 58953566 -91829987 - MIR SINE MIR -41 221 3 2881 62 3 3 chr11 58953917 58954286 -91829267 - L1PB1 LINE L1 -1 6150 5782 223 143 0 41 chr11 58954286 58954335 -91829218 + (TA)n Simple_repeat Simple_repeat 1 47 0 342 224 31 31 chr11 58954335 58954433 -91829120 + L1MC4 LINE L1 6604 6701 -1341 1360 94 5 42 chr11 58954441 58954654 -91828899 - L1P5 LINE L1 -360 5791 5587 402 307 68 11 chr11 58954755 58954931 -91828622 + MIR SINE MIR 26 211 -51 548 280 27 74 chr11 58955898 58956155 -91827398 - MIR SINE MIR -17 245 1 957 87 16 0 chr11 58956600 58956743 -91826810 + L1M1 LINE L1 5478 5623 -528 198 0 0 0 chr11 58956843 58956865 -91826688 + (A)n Simple_repeat Simple_repeat 1 22 0 274 331 16 41 chr11 58956892 58957013 -91826540 - MER5A DNA MER1_type -51 138 21 272 320 109 23 chr11 58957093 58957221 -91826332 - MIR SINE MIR -76 186 48 388 314 163 0 chr11 58957225 58957397 -91826156 + MIR SINE MIR 13 212 -50 1804 157 30 0 chr11 58957537 58957836 -91825717 - AluJo SINE Alu -4 308 1 329 245 104 9 chr11 58958068 58958174 -91825379 - MIR SINE MIR -13 249 134 241 336 68 34 chr11 58958174 58958320 -91825233 - MIR SINE MIR -50 212 62 561 279 37 35 chr11 58958673 58958924 -91824629 + MIR SINE MIR 2 258 -4 283 309 99 17 chr11 58960119 58960300 -91823253 + MIR3 SINE MIR 5 200 -8 428 289 27 34 chr11 58960747 58960896 -91822657 + MIR3 SINE MIR 3 150 -58 275 285 92 63 chr11 58961675 58962024 -91821529 - L2 LINE L2 -194 3078 2714 189 0 0 0 chr11 58962024 58962045 -91821508 + (TA)n Simple_repeat Simple_repeat 2 22 0 978 130 68 11 chr11 58962157 58962334 -91821219 + L1MA4A LINE L1 5652 5838 -465 1559 77 54 5 chr11 58962345 58962566 -91820987 - L1PA11 LINE L1 -2 6172 5941 2104 114 0 0 chr11 58962601 58962891 -91820662 + AluSc SINE Alu 1 290 -19 198 192 0 0 chr11 58963940 58963992 -91819561 + (TG)n Simple_repeat Simple_repeat 1 52 0 780 148 0 0 chr11 58964013 58964182 -91819371 + (TG)n Simple_repeat Simple_repeat 1 169 0 230 308 62 0 chr11 58964882 58964947 -91818606 + L2 LINE L2 3151 3219 -53 344 297 21 62 chr11 58965339 58965484 -91818069 + MIR SINE MIR 48 186 -76 2298 122 30 11 chr11 58965929 58966197 -91817356 - Tigger2 DNA MER2_type -45 2673 2395 1630 111 13 0 chr11 58966197 58966422 -91817131 - MER30 DNA MER1_type 0 230 3 2298 122 30 11 chr11 58966422 58966523 -91817030 - Tigger2 DNA MER2_type -323 2395 2297 228 247 54 75 chr11 58966579 58966672 -91816881 - MIR SINE MIR -60 202 112 1106 185 0 32 chr11 58967613 58967829 -91815724 - MER3 DNA MER1_type 0 209 1 696 196 14 34 chr11 58967866 58968014 -91815539 - MER5B DNA MER1_type -17 161 17 2092 127 0 0 chr11 58968063 58968363 -91815190 + AluSc SINE Alu 1 300 -9 327 49 0 0 chr11 58970709 58970750 -91812803 + (CA)n Simple_repeat Simple_repeat 1 41 0 588 266 53 72 chr11 58971071 58971104 -91812449 - L2 LINE L2 0 3313 3281 2134 101 0 0 chr11 58971104 58971401 -91812152 + AluSq SINE Alu 1 297 -16 588 266 53 72 chr11 58971401 58971671 -91811882 - L2 LINE L2 -32 3281 3016 296 226 36 12 chr11 58971680 58971764 -91811789 + MIR3 SINE MIR 73 158 -50 1718 107 92 4 chr11 58972147 58972436 -91811117 + AluSq SINE Alu 1 312 0 188 208 94 19 chr11 58972588 58972641 -91810912 + MER5A DNA MER1_type 33 89 -100 283 214 68 68 chr11 58973493 58973610 -91809943 - L3 LINE CR1 -56 1521 1405 321 305 136 34 chr11 58973641 58973818 -91809735 + MIR SINE MIR 2 196 -66 2127 111 7 0 chr11 58973896 58974203 -91809350 + AluSg1 SINE Alu 1 309 0 1062 184 39 31 chr11 58974287 58974542 -91809011 + MER33 DNA MER1_type 1 257 -67 26 0 0 0 chr11 58974583 58974609 -91808944 + GC_rich Low_complexity Low_complexity 1 26 0 327 193 9 73 chr11 58974764 58974791 -91808762 + MER33 DNA MER1_type 223 250 -2335 2095 136 0 0 chr11 58974791 58975100 -91808453 - AluSx SINE Alu -3 309 1 327 193 9 73 chr11 58975100 58975181 -91808372 + MER33 DNA MER1_type 250 324 0 207 222 0 56 chr11 58975376 58975430 -91808123 - MIR SINE MIR 0 262 212 221 239 11 15 chr11 58975446 58975543 -91808010 + MIR SINE MIR 18 149 -113 385 281 107 31 chr11 58975659 58975855 -91807698 - MIR SINE MIR -24 238 28 200 222 0 19 chr11 58976138 58976178 -91807375 + (TAA)n Simple_repeat Simple_repeat 3 43 -12 3732 49 0 0 chr11 58976178 58976629 -91806924 + L1PA8 LINE L1 5709 6159 -13 200 222 0 19 chr11 58976629 58976642 -91806911 + (TAA)n Simple_repeat Simple_repeat 43 55 0 231 185 0 56 chr11 58976642 58976696 -91806857 - MIR SINE MIR 0 262 212 251 296 120 32 chr11 58976775 58976900 -91806653 + MIR SINE MIR 117 252 -10 513 271 23 95 chr11 58976905 58977126 -91806427 - MIR SINE MIR -57 205 1 180 0 0 0 chr11 58978147 58978167 -91805386 + (T)n Simple_repeat Simple_repeat 1 20 0 184 290 140 20 chr11 58978650 58978750 -91804803 - MIR SINE MIR -60 148 37 * 210 345 84 21 chr11 58978746 58978888 -91804665 - L2 LINE L2 -4 3268 3118 505 308 73 34 chr11 58979400 58979634 -91803919 - L2 LINE L2 -420 2894 2652 1030 180 10 39 chr11 58979647 58979853 -91803700 - MSTD LTR MaLR 0 396 197 237 296 254 0 chr11 58979857 58980026 -91803527 - L2 LINE L2 -675 2639 2428 1729 178 9 107 chr11 58980569 58981008 -91802545 + MSTD LTR MaLR 1 396 0 538 290 99 29 chr11 58981019 58981291 -91802262 + MLT1J LTR MaLR 52 342 -169 774 304 57 51 chr11 58981434 58981670 -91801883 - L2 LINE L2 -941 2373 2140 1679 277 41 34 chr11 58981670 58982259 -91801294 + MLT1E LTR MaLR 1 593 0 774 304 57 51 chr11 58982259 58982360 -91801193 - L2 LINE L2 -1174 2140 2041 2288 168 38 14 chr11 58982360 58982782 -91800771 - MSTB1 LTR MaLR 0 432 1 774 304 57 51 chr11 58982782 58982933 -91800620 - L2 LINE L2 -1273 2041 1881 6738 224 27 46 chr11 58982959 58984825 -91798728 + L1M4b LINE L1 90 1911 -4944 234 0 0 0 chr11 58984825 58984851 -91798702 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 886 240 58 0 chr11 58984858 58985066 -91798487 - AluJo SINE Alu -91 221 2 945 240 55 10 chr11 58985066 58985358 -91798195 + L1M4b LINE L1 1904 2208 -4751 * 4168 159 40 30 chr11 58985357 58985715 -91797838 + L1MB8 LINE L1 5290 5643 -535 1924 189 19 8 chr11 58985715 58986074 -91797479 + MLT1A1 LTR MaLR 3 365 0 4168 159 40 30 chr11 58986074 58986543 -91797010 + L1MB8 LINE L1 5643 6125 -53 1082 106 56 0 chr11 58986539 58986700 -91796853 - L1PA15 LINE L1 -613 5553 5384 * 3318 128 98 2 chr11 58986700 58987244 -91796309 + L1PA15 LINE L1 5558 6158 -7 2161 91 16 10 chr11 58987246 58987553 -91796000 + AluSx SINE Alu 1 309 -3 361 113 62 38 chr11 58987576 58987656 -91795897 + L1MB7 LINE L1 6102 6183 -1 187 251 300 22 chr11 58987713 58987936 -91795617 - L2 LINE L2 -1739 1575 1291 379 277 36 9 chr11 58988227 58988339 -91795214 + MER45A DNA AcHobo 1 115 -63 270 0 0 0 chr11 58988344 58988374 -91795179 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1773 128 25 7 chr11 58988374 58988648 -91794905 - AluJb SINE Alu -33 279 1 233 239 141 0 chr11 58988648 58988719 -91794834 + MER45A DNA AcHobo 98 178 0 731 251 81 56 chr11 58988903 58989074 -91794479 + MLT1I LTR MaLR 26 191 -218 1615 168 21 3 chr11 58989074 58989365 -91794188 + AluJo SINE Alu 1 296 -16 731 251 81 56 chr11 58989365 58989540 -91794013 + MLT1I LTR MaLR 191 409 0 183 80 0 0 chr11 58989797 58989822 -91793731 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 203 234 117 63 chr11 58989824 58989935 -91793618 - L2 LINE L2 -4 3268 3152 1896 69 4 0 chr11 58990357 58990604 -91792949 + L1P4 LINE L1 5372 5619 -544 718 127 38 108 chr11 58990605 58990763 -91792790 + MER51B LTR ERV1 8 154 -223 * 1915 103 25 62 chr11 58990734 58990794 -91792759 + MER51B LTR ERV1 70 131 -246 2221 95 0 3 chr11 58990794 58991100 -91792453 - AluSc SINE Alu -4 305 1 1915 103 25 62 chr11 58991100 58991359 -91792194 + MER51B LTR ERV1 131 377 0 10971 135 45 38 chr11 58991359 58992826 -91790727 + MER51B-int LTR ERV1 1 1487 -6329 2034 115 21 0 chr11 58992826 58993113 -91790440 + AluSp SINE Alu 1 293 -20 10971 135 45 38 chr11 58993113 58993577 -91789976 + MER51B-int LTR ERV1 1487 1946 -5870 5911 121 45 10 chr11 58993574 58994124 -91789429 + MER51B-int LTR ERV1 2218 2747 -5069 * 2196 113 0 3 chr11 58994124 58994433 -91789120 - AluSq SINE Alu -5 308 1 5911 121 45 10 chr11 58994433 58994908 -91788645 + MER51B-int LTR ERV1 2747 3279 -4537 2189 104 23 9 chr11 58994931 58995276 -91788277 + MER51B-int LTR ERV1 4655 5004 -2533 2128 88 37 0 chr11 58995275 58995571 -91787982 + MER51B-int LTR ERV1 5249 5555 -1982 * 458 120 0 2 chr11 58995571 58995685 -91787868 + MER57B LTR ERV1 19 162 -272 2172 152 3 0 chr11 58995831 58996160 -91787393 + MER51B-int LTR ERV1 7487 7816 0 2465 106 2 55 chr11 58996161 58996559 -91786994 + MER51B LTR ERV1 1 377 0 4126 87 2 2 chr11 58996559 58997111 -91786442 + L1PA12 LINE L1 5616 6167 -1 455 309 69 11 chr11 58997459 58997634 -91785919 - MIR SINE MIR -15 247 63 875 170 80 35 chr11 58998471 58998671 -91784882 - MER3 DNA MER1_type 0 209 1 886 265 74 0 chr11 58998676 58998906 -91784647 + MIR SINE MIR 14 260 -2 361 162 101 14 chr11 58999356 58999458 -91784095 - MLT1G LTR MaLR -289 266 152 576 233 186 12 chr11 58999460 58999632 -91783921 - MIR SINE MIR -28 234 33 1850 163 14 79 chr11 58999833 59000250 -91783303 - MLT1B LTR MaLR 0 390 1 1342 139 5 15 chr11 59000473 59000675 -91782878 + AluJo SINE Alu 87 286 -26 215 310 23 23 chr11 59000714 59000801 -91782752 - MIR SINE MIR -70 192 106 1302 199 3 26 chr11 59000877 59001179 -91782374 + AluSx SINE Alu 1 295 -17 294 29 0 0 chr11 59001288 59001323 -91782230 + (CA)n Simple_repeat Simple_repeat 2 36 0 230 291 25 0 chr11 59001330 59001409 -91782144 - MIR SINE MIR -121 141 61 1295 261 98 37 chr11 59001629 59002119 -91781434 + MLT1H1 LTR MaLR 36 555 0 875 269 32 101 chr11 59002455 59002950 -91780603 + L2 LINE L2 2812 3272 0 630 269 65 124 chr11 59003315 59003758 -91779795 - MLT1K LTR MaLR -81 507 91 561 150 0 0 chr11 59004330 59004430 -91779123 + (TGGA)n Simple_repeat Simple_repeat 1 100 0 502 281 109 16 chr11 59004584 59004776 -91778777 - MIR SINE MIR 0 262 53 350 262 103 48 chr11 59004932 59005058 -91778495 - MLT1J2 LTR MaLR -3 447 315 312 300 67 8 chr11 59005052 59005172 -91778381 - MLT1I LTR MaLR -169 240 114 * 389 241 54 18 chr11 59005592 59005704 -91777849 - MIR SINE MIR -65 197 82 794 294 35 0 chr11 59005881 59006112 -91777441 + MIR SINE MIR 15 253 -9 1583 204 78 43 chr11 59006791 59006827 -91776726 + L1M4 LINE L1 5254 5287 -897 867 144 0 0 chr11 59006827 59006959 -91776594 + FLAM_C SINE Alu 1 132 -1 1583 204 78 43 chr11 59006959 59007005 -91776548 + L1M4 LINE L1 5287 5330 -854 2531 120 52 0 chr11 59007005 59007412 -91776141 - MSTA LTR MaLR 0 428 1 1583 204 78 43 chr11 59007412 59007817 -91775736 + L1M4 LINE L1 5330 5759 -425 2231 101 10 10 chr11 59007830 59008138 -91775415 + AluSx SINE Alu 1 308 -4 186 43 0 0 chr11 59008297 59008320 -91775233 + (A)n Simple_repeat Simple_repeat 1 23 0 2352 98 0 19 chr11 59009285 59009600 -91773953 - AluY SINE Alu -2 309 1 2350 99 0 0 chr11 59009600 59009892 -91773661 - AluSq SINE Alu -21 292 1 232 254 0 0 chr11 59010010 59010069 -91773484 - L1ME4a LINE L1 0 6121 6063 709 134 17 0 chr11 59010091 59010210 -91773343 + FAM SINE Alu 1 44 -5 2737 209 36 3 chr11 59010276 59010883 -91772670 - L1MC3 LINE L1 -1 7784 7158 2068 125 14 7 chr11 59011020 59011317 -91772236 - AluSx SINE Alu -13 299 1 523 319 55 4 chr11 59011470 59011705 -91771848 - MIR SINE MIR -1 261 15 635 263 101 18 chr11 59011736 59011960 -91771593 + MIR SINE MIR 15 262 0 441 66 0 0 chr11 59012028 59012089 -91771464 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 1333 230 56 20 chr11 59012184 59012592 -91770961 - Charlie4a DNA MER1_type -80 428 6 201 39 0 0 chr11 59013222 59013248 -91770305 + (CA)n Simple_repeat Simple_repeat 2 27 0 2312 156 45 7 chr11 59013457 59013860 -91769693 - MER47B DNA MER2_type 0 418 1 2169 129 46 13 chr11 59014353 59014726 -91768827 - MLT1B LTR MaLR -5 385 1 755 260 94 24 chr11 59015570 59015858 -91767695 - L1ME3 LINE L1 -2 6160 5853 1472 220 85 45 chr11 59016009 59016409 -91767144 + MLT1G LTR MaLR 175 590 0 2501 149 11 44 chr11 59016794 59017050 -91766503 - MSTB LTR MaLR -5 421 183 2345 103 0 3 chr11 59017050 59017351 -91766202 + AluSg1 SINE Alu 1 300 -9 2501 149 11 44 chr11 59017351 59017529 -91766024 - MSTB LTR MaLR -243 183 1 9216 166 12 8 chr11 59017529 59019172 -91764381 - MSTB-int LTR MaLR 0 1651 2 2155 145 39 39 chr11 59019174 59019424 -91764129 - MSTB LTR MaLR 0 426 174 7624 77 23 8 chr11 59019424 59020480 -91763073 + MER11C LTR ERVK 1 1071 0 2155 145 39 39 chr11 59020480 59020615 -91762938 - MSTB LTR MaLR -251 175 41 401 117 2 0 chr11 59020658 59020722 -91762831 - MSTB LTR MaLR -363 65 1 2127 117 53 11 chr11 59020797 59021157 -91762396 + THE1C LTR MaLR 1 375 0 546 286 39 43 chr11 59021232 59021477 -91762076 + MIR SINE MIR 12 254 -8 1928 148 7 58 chr11 59022033 59022465 -91761088 - L1MB8 LINE L1 0 6178 5769 2038 112 66 0 chr11 59022659 59022946 -91760607 - AluSx SINE Alu -6 306 1 21 0 0 0 chr11 59022969 59022990 -91760563 + AT_rich Low_complexity Low_complexity 1 21 0 320 270 76 15 chr11 59022997 59023238 -91760315 + MARNA DNA Mariner 79 386 -200 306 324 73 7 chr11 59023711 59023847 -91759706 - MER5B DNA MER1_type -33 145 1 1738 174 0 40 chr11 59023983 59024305 -91759248 + AluJo SINE Alu 1 309 -3 184 250 0 0 chr11 59024566 59024606 -91758947 - MIR3 SINE MIR -9 199 160 367 248 64 8 chr11 59024621 59024746 -91758807 + MLT1J2 LTR MaLR 3 134 -316 2042 127 53 53 chr11 59024751 59024958 -91758595 + MLT1A1 LTR MaLR 1 210 -155 1974 138 41 36 chr11 59024958 59025320 -91758233 + THE1B LTR MaLR 1 364 0 2042 127 53 53 chr11 59025320 59025473 -91758080 + MLT1A1 LTR MaLR 209 361 -4 6176 210 99 40 chr11 59025478 59026978 -91756575 + MLT1A1-int LTR MaLR 1 1595 -140 1921 151 10 7 chr11 59026978 59027270 -91756283 - AluSx SINE Alu -18 294 2 6176 210 99 40 chr11 59027270 59027299 -91756254 + MLT1A1-int LTR MaLR 1595 1621 -114 1691 180 19 61 chr11 59027309 59027404 -91756149 + MLT1A1 LTR MaLR 2 99 -266 2164 115 3 0 chr11 59027404 59027691 -91755862 + AluSx SINE Alu 11 298 -14 1691 180 19 61 chr11 59027691 59027973 -91755580 + MLT1A1 LTR MaLR 99 363 -2 604 244 60 0 chr11 59028014 59028182 -91755371 + MLT1J2 LTR MaLR 241 418 -32 209 196 0 39 chr11 59028538 59028589 -91754964 + G-rich Low_complexity Low_complexity 4 52 0 240 297 34 51 chr11 59029429 59029547 -91754006 + MIR SINE MIR 32 147 -115 200 321 112 32 chr11 59032075 59032415 -91751138 + L2 LINE L2 2904 3270 -2 721 143 24 0 chr11 59032497 59032623 -91750930 + FLAM_C SINE Alu 5 133 0 209 224 15 15 chr11 59032818 59032885 -91750668 + (CA)n Simple_repeat Simple_repeat 2 68 0 2364 78 0 10 chr11 59033325 59033621 -91749932 + AluSq SINE Alu 13 305 -8 2601 50 0 3 chr11 59033748 59034046 -91749507 - AluY SINE Alu -13 298 2 202 116 0 70 chr11 59034396 59034439 -91749114 + (CCCTG)n Simple_repeat Simple_repeat 1 40 0 357 250 62 0 chr11 59035112 59035224 -91748329 - MIR3 SINE MIR 0 208 90 346 324 88 6 chr11 59035333 59035503 -91748050 - MIR SINE MIR -1 261 78 4562 264 165 24 chr11 59035698 59038152 -91745401 - L2 LINE L2 0 3272 344 291 265 29 81 chr11 59038292 59038428 -91745125 - MIR SINE MIR -75 187 59 252 337 130 18 chr11 59040571 59040740 -91742813 + MIR SINE MIR 58 245 -17 762 265 64 24 chr11 59040767 59041016 -91742537 + MIR SINE MIR 2 260 -2 707 268 33 24 chr11 59041866 59042079 -91741474 - MIR SINE MIR -12 250 36 507 232 219 0 chr11 59046205 59046369 -91737184 - MIR SINE MIR 0 262 63 218 143 20 0 chr11 59046920 59046969 -91736584 + GA-rich Low_complexity Low_complexity 1 50 0 321 274 162 50 chr11 59047947 59048126 -91735427 - MIR3 SINE MIR 0 208 10 246 271 0 0 chr11 59048672 59048731 -91734822 - L2 LINE L2 -212 3060 3002 2263 97 0 39 chr11 59049861 59050172 -91733381 - AluSx SINE Alu -13 299 1 357 231 84 35 chr11 59050255 59050398 -91733155 + MIR SINE MIR 29 178 -84 233 275 42 23 chr11 59050390 59050540 -91733013 - MIR SINE MIR -76 132 3 * 438 268 50 45 chr11 59050831 59051029 -91732524 - MIR SINE MIR -50 212 14 1924 133 0 0 chr11 59051422 59051685 -91731868 + AluJb SINE Alu 34 296 -16 1110 114 14 9 chr11 59051686 59051896 -91731657 + Tigger3(Golem) DNA MER2_type 2395 2605 -424 1301 124 0 0 chr11 59051896 59052074 -91731479 - AluSq SINE Alu -1 312 135 2154 118 0 38 chr11 59052075 59052389 -91731164 - AluSx SINE Alu -10 302 1 2347 129 72 2 chr11 59052389 59052791 -91730762 + Tigger3(Golem) DNA MER2_type 2596 3025 -4 2120 124 0 10 chr11 59052819 59053118 -91730435 - AluSx SINE Alu -16 296 1 1872 145 0 35 chr11 59053124 59053434 -91730119 - AluJo SINE Alu 0 312 14 339 319 17 9 chr11 59053702 59053818 -91729735 - L2 LINE L2 -184 3088 2972 1666 196 7 7 chr11 59053912 59054198 -91729355 + AluJo SINE Alu 1 286 -26 1967 123 50 17 chr11 59054209 59054511 -91729042 + AluSx SINE Alu 1 312 0 229 228 134 39 chr11 59054846 59054973 -91728580 - MIR3 SINE MIR -11 197 59 2147 113 10 7 chr11 59055321 59055622 -91727931 + AluSx SINE Alu 1 302 -10 2223 111 6 16 chr11 59056971 59057286 -91726267 - AluSx SINE Alu 0 312 1 2394 91 3 0 chr11 59057961 59058259 -91725294 + AluSg SINE Alu 1 299 -11 1813 234 32 57 chr11 59058259 59058510 -91725043 - L1ME3 LINE L1 -8 6154 5898 1903 164 7 3 chr11 59058510 59058803 -91724750 + AluJb SINE Alu 2 295 -17 2474 65 0 47 chr11 59058806 59059127 -91724426 + AluY SINE Alu 1 306 -5 1813 234 32 57 chr11 59059127 59059430 -91724123 - L1ME3 LINE L1 -266 5896 5610 1150 246 71 33 chr11 59059430 59059988 -91723565 + MLT2F LTR ERVL 1 663 0 378 214 164 14 chr11 59059989 59060129 -91723424 - L1ME3 LINE L1 -551 5613 5453 327 273 26 0 chr11 59060248 59060325 -91723228 + MIR SINE MIR 66 144 -64 1087 247 54 1 chr11 59060331 59060578 -91722975 - MIR SINE MIR 0 262 7 843 228 64 44 chr11 59061350 59061600 -91721953 + MIR SINE MIR 8 262 0 279 341 32 8 chr11 59062075 59062201 -91721352 - MIR SINE MIR -63 145 17 425 304 121 42 chr11 59062788 59062815 -91720738 + MIR SINE MIR 4 27 -235 2258 128 0 6 chr11 59062815 59063127 -91720426 + AluSx SINE Alu 1 310 -2 425 304 121 42 chr11 59063127 59063339 -91720214 + MIR SINE MIR 27 262 0 225 196 54 36 chr11 59064287 59064343 -91719210 - MIR SINE MIR -115 147 91 323 261 157 0 chr11 59065460 59065575 -91717978 + L2 LINE L2 3136 3268 -4 291 284 181 24 chr11 59066498 59066625 -91716928 - MIR SINE MIR -82 180 34 200 256 0 78 chr11 59067498 59067588 -91715965 + GA-rich Low_complexity Low_complexity 4 86 0 288 273 0 13 chr11 59067971 59068048 -91715505 + MIR SINE MIR 76 151 -111 389 281 209 0 chr11 59070227 59070380 -91713173 - MIR3 SINE MIR -1 207 23 2244 99 13 22 chr11 59071054 59071367 -91712186 + AluSx SINE Alu 1 310 -2 258 290 46 46 chr11 59071578 59071709 -91711844 - MIR SINE MIR -60 148 18 1215 229 125 26 chr11 59072243 59072658 -91710895 - MER113 DNA MER1_type? 0 521 66 347 286 224 14 chr11 59072757 59072904 -91710649 + L2 LINE L2 3094 3271 -1 210 294 0 0 chr11 59073637 59073688 -91709865 + L2 LINE L2 3222 3272 0 727 261 86 13 chr11 59073823 59074057 -91709496 - MIR SINE MIR -3 259 9 780 292 61 24 chr11 59074355 59074684 -91708869 + MLT1L LTR MaLR 120 460 -155 2092 142 7 0 chr11 59074966 59075268 -91708285 - AluSx SINE Alu -8 304 1 409 240 80 47 chr11 59075284 59075434 -91708119 + MIR3 SINE MIR 6 160 -48 239 122 0 20 chr11 59075832 59075881 -91707672 - L1MB4 LINE L1 -1 6179 6132 2296 83 0 0 chr11 59075881 59076159 -91707394 - AluSx SINE Alu -17 295 18 1132 192 10 20 chr11 59076174 59076372 -91707181 - AluJo SINE Alu -116 196 1 1073 128 0 61 chr11 59076374 59076420 -91707133 - L1MB3 LINE L1 -311 5872 5825 1477 192 34 24 chr11 59076420 59076717 -91706836 - AluJo SINE Alu 0 312 13 1073 128 0 61 chr11 59076717 59076866 -91706687 - L1MB3 LINE L1 -358 5825 5689 1484 229 126 43 chr11 59077141 59077648 -91705905 - MLT1H LTR MaLR 0 549 1 558 294 54 2 chr11 59077700 59077865 -91705688 - MIR SINE MIR -60 202 29 545 259 71 53 chr11 59077865 59078035 -91705518 - MER5B DNA MER1_type -3 175 3 184 261 77 15 chr11 59078305 59078370 -91705183 - MIR3 SINE MIR -7 201 133 908 254 32 11 chr11 59078670 59078949 -91704604 + L1MA9 LINE L1 5990 6274 -38 21 0 0 0 chr11 59079004 59079025 -91704528 + AT_rich Low_complexity Low_complexity 1 21 0 190 369 60 13 chr11 59079366 59079515 -91704038 - L2 LINE L2 -198 3074 2919 2232 118 13 0 chr11 59080252 59080556 -91702997 - AluSx SINE Alu -4 308 1 796 290 50 84 chr11 59080591 59081067 -91702486 - L2 LINE L2 0 3272 2813 1174 207 73 55 chr11 59081220 59081713 -91701840 - L1MC5 LINE L1 -161 7800 7299 1174 236 102 96 chr11 59081860 59081950 -91701603 - L1MC5 LINE L1 -534 5825 5737 2143 108 40 0 chr11 59081950 59082247 -91701306 - AluSx SINE Alu -3 309 1 1174 236 102 96 chr11 59082247 59083102 -91700451 - L1MC5 LINE L1 -622 5737 4888 1530 175 12 92 chr11 59083102 59083428 -91700125 - AluJb SINE Alu -12 300 1 1174 236 102 96 chr11 59083428 59083722 -91699831 - L1MC5 LINE L1 -1471 4888 5934 2840 73 0 8 chr11 59083722 59084080 -91699473 - THE1A LTR MaLR 0 355 1 1174 236 102 96 chr11 59084080 59084336 -91699217 - L1MC5 LINE L1 -424 5935 5682 529 263 52 13 chr11 59084337 59084569 -91698984 - L2 LINE L2 -652 2662 2422 208 329 67 3 chr11 59086014 59086126 -91697427 - MIR SINE MIR -76 132 14 1820 164 0 16 chr11 59086200 59086505 -91697048 - AluJo SINE Alu -12 300 1 311 254 9 60 chr11 59086573 59086691 -91696862 + MIR SINE MIR 50 166 -63 243 0 0 0 chr11 59087092 59087119 -91696434 + (CA)n Simple_repeat Simple_repeat 2 28 0 284 270 112 72 chr11 59087491 59087643 -91695910 + MIR3 SINE MIR 48 205 -3 294 73 0 0 chr11 59087868 59087909 -91695644 + (TG)n Simple_repeat Simple_repeat 2 42 0 396 295 186 10 chr11 59088134 59088327 -91695226 + MIR SINE MIR 17 243 -19 463 226 0 0 chr11 59088547 59088631 -91694922 - L2 LINE L2 0 3272 3189 228 296 74 59 chr11 59088767 59088902 -91694651 + L2 LINE L2 2715 2851 -463 307 351 79 44 chr11 59088936 59089278 -91694275 + L2 LINE L2 2919 3272 0 298 237 244 38 chr11 59089374 59089505 -91694048 + MIR SINE MIR 57 214 -48 572 175 70 63 chr11 59089525 59089750 -91693803 + L1MA9 LINE L1 5699 5921 -263 2126 131 26 3 chr11 59089750 59090055 -91693498 + AluSx SINE Alu 1 312 0 572 175 70 63 chr11 59090055 59090233 -91693320 + L1MA9 LINE L1 5921 6181 -3 1724 165 45 10 chr11 59090391 59090562 -91692991 - AluJb SINE Alu -10 302 115 225 0 0 0 chr11 59090562 59090587 -91692966 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1724 165 45 10 chr11 59090587 59090706 -91692847 - AluJb SINE Alu -197 115 2 241 304 222 22 chr11 59090984 59091119 -91692434 - MIR SINE MIR -98 164 3 1403 37 9 0 chr11 59091125 59091339 -91692214 + (TTC)n Simple_repeat Simple_repeat 1 216 0 799 240 23 0 chr11 59091345 59091516 -91692037 - FRAM SINE Alu -1 175 1 317 259 9 18 chr11 59091546 59091658 -91691895 - L1ME4a LINE L1 -43 6078 5968 255 239 14 0 chr11 59091676 59091747 -91691806 - L1ME4a LINE L1 -244 5877 5806 691 120 0 0 chr11 59092186 59092306 -91691247 - AluJb SINE Alu 0 309 190 2273 82 4 0 chr11 59092596 59092908 -91690645 - AluSc SINE Alu 0 313 1 356 200 200 50 chr11 59093008 59093148 -91690405 + MIR SINE MIR 33 193 -69 601 317 93 0 chr11 59093173 59093378 -91690175 + MIR SINE MIR 23 246 -16 303 306 192 16 chr11 59093797 59093990 -91689563 + MIR SINE MIR 34 260 -2 2186 98 27 14 chr11 59094051 59094347 -91689206 - AluSg SINE Alu -10 300 1 345 325 45 103 chr11 59094388 59094680 -91688873 + L2 LINE L2 2982 3256 -16 362 21 21 0 chr11 59094686 59094733 -91688820 + (GA)n Simple_repeat Simple_repeat 1 48 0 188 381 19 19 chr11 59094852 59094957 -91688596 + MIR SINE MIR 41 145 -63 306 307 69 40 chr11 59094980 59095182 -91688371 - MIR SINE MIR -14 248 41 34 0 0 0 chr11 59095182 59095216 -91688337 + AT_rich Low_complexity Low_complexity 1 34 0 383 290 159 0 chr11 59095385 59095561 -91687992 + MIR SINE MIR 53 256 -6 555 319 111 30 chr11 59095663 59096068 -91687485 - L2 LINE L2 0 3272 2835 981 234 0 5 chr11 59096076 59096281 -91687272 + MER20 DNA MER1_type 2 205 -14 1385 302 122 36 chr11 59096322 59096685 -91686868 - L2 LINE L2 -547 2767 2436 294 29 0 0 chr11 59096685 59096720 -91686833 + (TG)n Simple_repeat Simple_repeat 2 36 0 1385 302 122 36 chr11 59096720 59097293 -91686260 - L2 LINE L2 -878 2436 1751 535 284 13 52 chr11 59097896 59098128 -91685425 - L2 LINE L2 -72 3241 3019 190 283 33 0 chr11 59098533 59098593 -91684960 + MIR3 SINE MIR 129 190 -18 2282 198 39 29 chr11 59099073 59099640 -91683913 - MLT1E3 LTR MaLR 0 624 42 794 282 111 68 chr11 59100725 59101150 -91682403 - LTR67 LTR ERVL 0 557 115 678 229 24 62 chr11 59101271 59101481 -91682072 - MIR SINE MIR -58 204 3 215 338 13 0 chr11 59101898 59101975 -91681578 + L2 LINE L2 2905 2982 -290 463 300 9 0 chr11 59102315 59102425 -91681128 - L2 LINE L2 0 3272 3162 264 259 35 24 chr11 59102576 59102661 -91680892 + MIR SINE MIR 117 202 -60 2005 155 0 0 chr11 59102693 59102977 -91680576 - AluSx SINE Alu -28 284 1 288 295 65 50 chr11 59103118 59103257 -91680296 + MER5B DNA MER1_type 1 141 -37 258 366 79 14 chr11 59103480 59103846 -91679707 - L1MC4a LINE L1 -1870 5938 5549 249 196 0 18 chr11 59103876 59103932 -91679621 - MER5B DNA MER1_type -123 55 1 202 128 0 26 chr11 59104765 59104804 -91678749 + (TG)n Simple_repeat Simple_repeat 2 39 0 263 278 15 11 chr11 59105165 59105299 -91678254 - MIR SINE MIR -70 192 14 206 316 13 26 chr11 59106368 59106444 -91677109 + MIR SINE MIR 18 92 -116 1182 116 0 0 chr11 59106444 59106639 -91676914 + AluSp SINE Alu 131 325 0 489 226 77 30 chr11 59107886 59108054 -91675499 + LTR16C LTR ERVL 316 491 0 183 308 202 48 chr11 59108171 59108379 -91675174 - MIR SINE MIR -15 247 8 234 274 60 12 chr11 59108947 59109031 -91674522 - MIR SINE MIR 0 262 175 318 329 53 0 chr11 59109092 59109262 -91674291 + L1ME3 LINE L1 5984 6162 0 2513 67 0 7 chr11 59109270 59109567 -91673986 + AluSp SINE Alu 1 295 -18 250 304 36 58 chr11 59109633 59109771 -91673782 + L2 LINE L2 3161 3295 -18 363 190 165 41 chr11 59109818 59109939 -91673614 - MIR SINE MIR -31 231 96 384 314 45 57 chr11 59110163 59110408 -91673145 + MIR SINE MIR 21 262 0 296 264 46 0 chr11 59110557 59110671 -91672882 + MIR SINE MIR 30 152 -64 2341 119 3 0 chr11 59110671 59110982 -91672571 + AluSx SINE Alu 1 312 0 2228 120 0 0 chr11 59111448 59111749 -91671804 - AluSx SINE Alu -11 301 1 637 184 76 32 chr11 59111951 59112109 -91671444 - MER96B DNA MER1_type? -252 165 1 894 239 18 14 chr11 59112273 59112491 -91671062 + MER20 DNA MER1_type 1 219 0 952 168 0 0 chr11 59112554 59112697 -91670856 + FRAM SINE Alu 18 160 -16 1995 100 100 4 chr11 59112702 59112982 -91670571 + AluSg SINE Alu 1 307 -3 256 271 69 62 chr11 59113015 59113159 -91670394 + MIR3 SINE MIR 19 163 -45 2515 81 3 0 chr11 59114354 59114662 -91668891 - AluSg SINE Alu -1 309 1 905 208 0 0 chr11 59115369 59115537 -91668016 - MER5A DNA MER1_type -1 188 21 891 255 17 4 chr11 59115558 59115789 -91667764 + MIR SINE MIR 29 262 0 944 188 9 71 chr11 59116213 59116437 -91667116 - MER63A DNA MER1_type 0 210 1 590 196 155 7 chr11 59116611 59116759 -91666794 + MER5A DNA MER1_type 14 183 -6 842 258 16 43 chr11 59117470 59117726 -91665827 + MIR SINE MIR 3 251 -11 208 173 0 107 chr11 59118371 59118568 -91664985 + G-rich Low_complexity Low_complexity 3 178 0 412 322 0 16 chr11 59119348 59119531 -91664022 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 216 347 8 0 chr11 59119599 59119723 -91663830 + (TG)n Simple_repeat Simple_repeat 2 126 0 4690 114 9 20 chr11 59120140 59120273 -91663280 - L1PA14 LINE L1 0 6161 6028 2361 68 32 26 chr11 59120273 59120581 -91662972 - AluY SINE Alu -1 310 1 4690 114 9 20 chr11 59120581 59121238 -91662315 - L1PA14 LINE L1 -133 6028 5380 379 288 34 51 chr11 59121919 59122096 -91661457 + MLT1J2 LTR MaLR 42 215 -235 240 302 183 15 chr11 59122277 59122417 -91661136 + MIR SINE MIR 5 167 -41 599 149 189 7 chr11 59123325 59123473 -91660080 + MER69A DNA AcHobo 1 175 -2 399 269 106 7 chr11 59123587 59123728 -91659825 + MIR3 SINE MIR 37 191 -17 702 249 108 0 chr11 59124249 59124434 -91659119 + MIR SINE MIR 37 241 -21 1503 116 18 0 chr11 59125525 59125750 -91657803 + MSTC LTR MaLR 1 229 -199 326 323 11 0 chr11 59126039 59126132 -91657421 + L3 LINE CR1 1376 1469 -108 521 237 21 81 chr11 59126876 59126998 -91656555 + MER5A DNA MER1_type 15 124 -65 2369 102 0 0 chr11 59126998 59127302 -91656251 - AluSx SINE Alu -8 304 1 521 237 21 81 chr11 59127302 59127365 -91656188 + MER5A DNA MER1_type 124 189 0 807 259 18 27 chr11 59127427 59127647 -91655906 + MIR SINE MIR 45 262 0 2325 115 61 29 chr11 59127725 59128133 -91655420 + MSTC LTR MaLR 1 421 -7 221 289 99 41 chr11 59128403 59128524 -91655029 - MIR SINE MIR -115 147 20 * 224 296 90 53 chr11 59128506 59128695 -91654858 + MIR SINE MIR 32 227 -35 231 336 58 10 chr11 59128979 59129083 -91654470 + MIR SINE MIR 30 138 -124 558 292 90 6 chr11 59129156 59129334 -91654219 + LTR33 LTR ERVL 1 193 -328 343 292 69 51 chr11 59129346 59129562 -91653991 + LTR33 LTR ERVL 295 514 -7 254 290 262 0 chr11 59130263 59130408 -91653145 - MIR SINE MIR -78 184 2 1137 278 78 24 chr11 59131021 59131442 -91652111 + MLT1J2 LTR MaLR 1 444 -6 220 320 26 0 chr11 59131623 59131701 -91651852 + MIR SINE MIR 76 155 -107 945 215 35 31 chr11 59131851 59132112 -91651441 - MIR SINE MIR 0 262 1 283 285 88 52 chr11 59132452 59132645 -91650908 + L2 LINE L2 2836 3035 -237 357 262 117 114 chr11 59132655 59132895 -91650658 - L2 LINE L2 -7 3265 3022 3874 81 25 4 chr11 59132895 59133453 -91650100 + L1PA10 LINE L1 5599 6168 0 357 262 117 114 chr11 59133453 59133632 -91649921 - L2 LINE L2 -250 3022 2845 675 196 35 7 chr11 59133634 59133777 -91649776 - MER63A DNA MER1_type -9 201 55 2184 109 6 19 chr11 59133916 59134228 -91649325 - AluSc SINE Alu -1 308 1 239 340 11 11 chr11 59134556 59134650 -91648903 - MIR SINE MIR -10 252 159 670 265 93 5 chr11 59134660 59134875 -91648678 + MIR SINE MIR 26 259 -3 272 284 128 9 chr11 59134892 59135001 -91648552 - MIR SINE MIR -117 145 24 533 252 60 18 chr11 59135355 59135573 -91647980 + LTR33 LTR ERVL 54 280 -241 195 139 0 0 chr11 59135824 59135860 -91647693 + (TG)n Simple_repeat Simple_repeat 1 36 0 497 318 0 7 chr11 59136068 59136222 -91647331 - MIR3 SINE MIR -15 193 41 522 291 26 7 chr11 59136432 59136583 -91646970 - L3 LINE CR1 -73 1504 1351 242 235 119 33 chr11 59137131 59137262 -91646291 + MIR SINE MIR 20 164 -63 435 314 45 29 chr11 59137262 59137407 -91646146 + MIR SINE MIR 14 166 -96 2055 114 17 24 chr11 59137407 59137704 -91645849 - AluSg SINE Alu -15 295 1 435 314 45 29 chr11 59137704 59137803 -91645750 + MIR SINE MIR 166 262 0 245 253 13 27 chr11 59138510 59138585 -91644968 + MIR SINE MIR 47 120 -142 23 33 0 0 chr11 59138696 59138726 -91644827 + AT_rich Low_complexity Low_complexity 1 30 0 865 128 0 8 chr11 59138730 59138855 -91644698 - FLAM_C SINE Alu -19 124 1 2353 108 3 9 chr11 59139097 59139412 -91644141 + AluSq SINE Alu 1 313 0 986 184 73 15 chr11 59139684 59139945 -91643608 + LTR33 LTR ERVL 246 521 0 222 244 0 0 chr11 59139981 59140100 -91643453 + (CA)n Simple_repeat Simple_repeat 2 120 0 237 326 11 0 chr11 59140519 59140608 -91642945 + L3 LINE CR1 1313 1402 -175 225 277 20 30 chr11 59140757 59140858 -91642695 + MIR3 SINE MIR 109 208 0 407 301 43 25 chr11 59141292 59141455 -91642098 + MIR SINE MIR 53 218 -44 22 56 0 0 chr11 59142521 59142557 -91640996 + AT_rich Low_complexity Low_complexity 1 36 0 473 89 25 0 chr11 59142815 59142894 -91640659 + L1MA7 LINE L1 6211 6291 0 194 339 0 0 chr11 59142962 59143018 -91640535 + L2 LINE L2 3217 3272 0 199 346 144 0 chr11 59143069 59143173 -91640380 - MIR SINE MIR -54 208 90 180 0 0 0 chr11 59143235 59143255 -91640298 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 304 284 273 6 chr11 59143548 59143724 -91639829 - L3 LINE CR1 -3 1574 1352 2251 63 60 0 chr11 59144158 59144443 -91639110 + AluY SINE Alu 1 302 -9 2120 110 0 20 chr11 59145266 59145565 -91637988 - AluSg SINE Alu -17 293 1 184 384 30 44 chr11 59147327 59147452 -91636101 + L2 LINE L2 3073 3195 -77 1656 162 0 30 chr11 59147452 59147754 -91635799 - AluSg SINE Alu -17 293 1 184 384 30 44 chr11 59147754 59147831 -91635722 + L2 LINE L2 3195 3272 0 219 286 0 0 chr11 59148797 59148846 -91634707 + C-rich Low_complexity Low_complexity 4 52 0 412 308 23 67 chr11 59149014 59149313 -91634240 + L2 LINE L2 2917 3202 -70 402 213 33 74 chr11 59149851 59149973 -91633580 - MIR SINE MIR -85 177 61 227 288 15 0 chr11 59150014 59150080 -91633473 - MIR SINE MIR -109 99 33 678 162 196 44 chr11 59150560 59150764 -91632789 - MER106B DNA MER1_type -1 1058 1 252 292 15 0 chr11 59151386 59151451 -91632102 - MIR SINE MIR -74 188 123 240 323 0 21 chr11 59151666 59151762 -91631791 + L3 LINE CR1 1141 1234 -343 201 329 27 0 chr11 59151910 59151983 -91631570 + L3 LINE CR1 1472 1546 -31 21 82 0 0 chr11 59152175 59152224 -91631329 + AT_rich Low_complexity Low_complexity 1 49 0 1887 131 28 0 chr11 59152227 59152517 -91631036 - AluSx SINE Alu -14 298 1 691 179 0 8 chr11 59152518 59152652 -91630901 - L1MA7 LINE L1 -3 6288 6156 434 239 99 14 chr11 59153329 59153471 -91630082 - MIR SINE MIR -77 185 32 382 312 65 12 chr11 59154228 59154398 -91629155 - MIR SINE MIR -50 212 34 2316 90 3 0 chr11 59154475 59154785 -91628768 + AluSx SINE Alu 1 311 -1 252 0 0 0 chr11 59154983 59155011 -91628542 + (A)n Simple_repeat Simple_repeat 1 28 0 199 317 110 28 chr11 59155897 59156042 -91627511 + L2 LINE L2 2582 2738 -576 792 296 99 62 chr11 59156084 59156616 -91626937 + L2 LINE L2 2734 3270 -2 272 233 62 70 chr11 59157114 59157243 -91626310 - L3 LINE CR1 -7 1570 1443 231 88 0 0 chr11 59157616 59157650 -91625903 + (TG)n Simple_repeat Simple_repeat 1 34 0 2789 88 0 33 chr11 59159315 59159713 -91623840 - L1PA5 LINE L1 0 6154 5770 219 268 42 28 chr11 59160536 59160607 -91622946 - MIR3 SINE MIR -17 191 120 1617 191 3 7 chr11 59161274 59161573 -91621980 - AluJb SINE Alu -14 298 1 211 355 112 9 chr11 59162125 59162232 -91621321 - L2 LINE L2 -9 3263 3146 221 0 35 0 chr11 59163967 59163996 -91619557 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 261 322 133 0 chr11 59164113 59164203 -91619350 - MIR SINE MIR -1 261 160 219 224 224 13 chr11 59165643 59165719 -91617834 + MIR SINE MIR 68 159 -103 385 253 13 80 chr11 59165727 59165877 -91617676 - MLT1K LTR MaLR -3 585 446 396 253 108 51 chr11 59166068 59166226 -91617327 - MLT1K LTR MaLR -411 177 11 192 239 28 42 chr11 59166261 59166332 -91617221 + MIR SINE MIR 163 232 -30 669 146 10 0 chr11 59166481 59166584 -91616969 + U13 snRNA snRNA 1 104 0 271 304 76 0 chr11 59170487 59170579 -91612974 - MIR SINE MIR -68 194 96 434 132 0 0 chr11 59170788 59170856 -91612697 - MSTA LTR MaLR 0 428 361 2226 110 3 0 chr11 59170862 59171171 -91612382 + AluSx SINE Alu 1 310 -2 365 324 165 17 chr11 59171182 59171557 -91611996 + L1M4c LINE L1 947 1538 -1205 515 282 18 25 chr11 59171687 59171850 -91611703 - MIR SINE MIR -99 163 2 192 40 0 0 chr11 59171907 59171932 -91611621 + (TAG)n Simple_repeat Simple_repeat 2 26 0 535 259 93 89 chr11 59171947 59172039 -91611514 - MIR SINE MIR -8 254 164 2145 116 3 0 chr11 59172039 59172332 -91611221 + AluSx SINE Alu 1 294 -18 535 259 93 89 chr11 59172332 59172475 -91611078 - MIR SINE MIR -98 164 18 721 239 32 5 chr11 59172972 59173160 -91610393 - MIR SINE MIR -5 257 65 321 288 119 8 chr11 59173295 59173413 -91610140 + L2 LINE L2 3171 3301 -12 209 173 0 39 chr11 59173690 59173742 -91609811 + (TAA)n Simple_repeat Simple_repeat 3 52 0 278 280 9 51 chr11 59174130 59174368 -91609185 + GA-rich Low_complexity Low_complexity 1 227 0 1723 173 0 16 chr11 59174525 59174646 -91608907 + AluJo SINE Alu 1 122 -190 2438 60 0 16 chr11 59174646 59174960 -91608593 - AluY SINE Alu -2 309 1 1723 173 0 16 chr11 59174960 59175145 -91608408 + AluJo SINE Alu 122 302 -10 1178 137 73 5 chr11 59175422 59175627 -91607926 + MER20 DNA MER1_type 1 219 0 1930 139 0 10 chr11 59175855 59176158 -91607395 - AluJo SINE Alu -2 310 11 841 248 4 43 chr11 59177129 59177387 -91606166 + AluSg1 SINE Alu 58 305 -4 662 276 52 55 chr11 59177387 59177804 -91605749 - MLT1L LTR MaLR -39 575 125 1598 166 6 68 chr11 59178024 59178350 -91605203 - AluJb SINE Alu -6 306 1 234 333 100 0 chr11 59178350 59178440 -91605113 - L2 LINE L2 -3 3269 3171 2396 81 0 0 chr11 59178478 59178819 -91604734 - AluSg SINE Alu 0 341 1 669 262 80 58 chr11 59178825 59179100 -91604453 + L2 LINE L2 3031 3311 -2 311 260 83 10 chr11 59179276 59179372 -91604181 + MIR SINE MIR 96 198 -64 688 221 37 43 chr11 59179468 59179631 -91603922 + AluJb SINE Alu 125 286 -26 471 146 29 58 chr11 59179634 59179771 -91603782 - MER93b LTR ERV1 -164 209 77 491 248 28 41 chr11 59180340 59180485 -91603068 - L2 LINE L2 -1 3312 3170 2326 86 3 0 chr11 59180485 59180787 -91602766 - AluSx SINE Alu -6 306 4 1736 141 22 0 chr11 59180832 59181143 -91602410 - AluJb SINE Alu 0 317 1 668 284 39 5 chr11 59181189 59181393 -91602160 + MIR SINE MIR 48 258 -4 299 242 32 21 chr11 59181416 59181511 -91602042 - MIR SINE MIR -137 125 30 760 268 34 1 chr11 59181519 59181725 -91601828 + MIR SINE MIR 40 249 -13 247 208 0 0 chr11 59181798 59181846 -91601707 + L2 LINE L2 3223 3270 -2 494 274 8 0 chr11 59181861 59181985 -91601568 - MIR3 SINE MIR -3 205 81 215 167 0 37 chr11 59182194 59182248 -91601305 + G-rich Low_complexity Low_complexity 1 52 0 194 282 84 0 chr11 59183284 59183355 -91600198 + MIR3 SINE MIR 95 171 -37 204 253 27 40 chr11 59183355 59183430 -91600123 - MER5A DNA MER1_type 0 189 116 200 180 0 80 chr11 59183733 59183783 -91599770 - MIR SINE MIR -1 261 216 302 297 0 42 chr11 59184484 59184602 -91598951 + G-rich Low_complexity Low_complexity 3 115 0 205 293 0 17 chr11 59184890 59184948 -91598605 + G-rich Low_complexity Low_complexity 2 58 0 365 340 27 21 chr11 59186163 59186351 -91597202 + MIR SINE MIR 53 241 -21 259 314 0 48 chr11 59186570 59186675 -91596878 + MIR3 SINE MIR 102 201 -7 468 326 34 6 chr11 59187602 59187780 -91595773 + MIR3 SINE MIR 20 202 -6 2295 82 0 7 chr11 59188669 59188972 -91594581 - AluSq SINE Alu -12 301 1 989 259 54 45 chr11 59189315 59189412 -91594141 - L1MC4a LINE L1 -1879 5929 5834 2181 106 3 3 chr11 59189412 59189714 -91593839 + AluSq SINE Alu 1 302 -11 989 259 54 45 chr11 59189714 59190040 -91593513 - L1MC4a LINE L1 -1974 5834 5502 1209 81 16 0 chr11 59190127 59190312 -91593241 + L1MA4A LINE L1 5998 6185 -118 579 149 0 0 chr11 59190313 59190400 -91593153 + 5S rRNA rRNA 1 87 -34 835 117 16 0 chr11 59190400 59190528 -91593025 + L1MA4A LINE L1 6170 6299 -4 1871 135 0 40 chr11 59190529 59190854 -91592699 + AluJo SINE Alu 1 312 0 799 299 28 12 chr11 59190869 59191120 -91592433 + MIR SINE MIR 8 262 0 227 222 37 74 chr11 59191503 59191611 -91591942 - MER113 DNA MER1_type? -405 116 13 527 321 24 0 chr11 59191648 59191813 -91591740 + MIR SINE MIR 23 191 -71 785 166 0 183 chr11 59191822 59192057 -91591496 + 7SK RNA RNA 2 193 0 741 164 0 0 chr11 59192081 59192215 -91591338 + FLAM_A SINE Alu 6 139 0 229 310 28 21 chr11 59192553 59192695 -91590858 - L1ME LINE L1 -224 5897 5755 533 335 56 21 chr11 59192752 59193092 -91590461 - L1ME LINE L1 -458 5663 5312 265 317 58 0 chr11 59193840 59193960 -91589593 - L2 LINE L2 -10 3262 3136 231 288 41 14 chr11 59194090 59194163 -91589390 + MIR SINE MIR 39 113 -149 1510 284 112 4 chr11 59194336 59194404 -91589149 - MER115 DNA AcHobo -158 535 476 2258 88 3 0 chr11 59194404 59194700 -91588853 + AluSq SINE Alu 1 297 -16 1510 284 112 4 chr11 59194700 59195113 -91588440 - MER115 DNA AcHobo -217 476 2 303 308 169 0 chr11 59195113 59195243 -91588310 + MIR SINE MIR 107 258 -4 1932 117 33 0 chr11 59195256 59195530 -91588023 + AluSg SINE Alu 1 283 -27 467 45 0 15 chr11 59195530 59195597 -91587956 + (CATA)n Simple_repeat Simple_repeat 2 67 0 337 318 38 0 chr11 59196053 59196185 -91587368 - MIR3 SINE MIR -34 174 38 1567 157 30 40 chr11 59196347 59196647 -91586906 + AluJb SINE Alu 2 298 -14 241 297 68 17 chr11 59196727 59196845 -91586708 - MIR SINE MIR 0 262 139 369 93 0 0 chr11 59196854 59196908 -91586645 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 252 86 0 0 chr11 59196989 59197024 -91586529 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 679 189 0 16 chr11 59197024 59197142 -91586411 - FLAM_C SINE Alu -193 119 2 319 318 101 31 chr11 59197146 59197275 -91586278 - MIR SINE MIR -118 144 7 294 237 203 51 chr11 59197960 59198078 -91585475 - MIR3 SINE MIR -62 146 11 192 339 62 0 chr11 59198246 59198311 -91585242 - L2 LINE L2 -60 3253 3185 372 255 5 53 chr11 59199043 59199231 -91584322 + GA-rich Low_complexity Low_complexity 2 180 0 239 233 0 50 chr11 59199353 59199413 -91584140 - L2 LINE L2 -13 3300 3244 216 143 0 0 chr11 59200600 59200642 -91582911 + (CAAAAA)n Simple_repeat Simple_repeat 4 45 0 485 276 27 75 chr11 59200650 59200849 -91582704 - MIR SINE MIR -3 205 15 433 304 58 0 chr11 59200866 59201037 -91582516 + MER5A DNA MER1_type 9 189 0 22 70 0 0 chr11 59201660 59201703 -91581850 + GC_rich Low_complexity Low_complexity 1 43 0 27 29 0 0 chr11 59202584 59202618 -91580935 + AT_rich Low_complexity Low_complexity 1 34 0 612 271 26 21 chr11 59203014 59203206 -91580347 - MER91A DNA MER1_type -3 193 1 662 197 0 0 chr11 59203530 59203652 -91579901 + FLAM_A SINE Alu 1 122 -11 1394 147 0 18 chr11 59203680 59203898 -91579655 + AluSq SINE Alu 5 218 -95 309 292 10 10 chr11 59204727 59204823 -91578730 - MIR3 SINE MIR -24 184 89 362 336 83 46 chr11 59204915 59205326 -91578227 + L2 LINE L2 2456 2881 -433 375 219 12 80 chr11 59206099 59206265 -91577288 + MIR SINE MIR 61 209 -53 585 120 0 0 chr11 59206605 59206697 -91576856 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 364 221 97 9 chr11 59206893 59207006 -91576547 + MER5A DNA MER1_type 60 182 -7 1864 168 0 19 chr11 59207989 59208298 -91575255 - AluJo SINE Alu -9 303 1 418 146 153 58 chr11 59208300 59208437 -91575116 - L1M4 LINE L1 -493 5691 5542 2126 97 38 3 chr11 59208443 59208731 -91574822 - AluSq SINE Alu -15 298 1 32 67 0 0 chr11 59208739 59208799 -91574754 + AT_rich Low_complexity Low_complexity 1 60 0 489 71 191 0 chr11 59208799 59208883 -91574670 - HY3 scRNA scRNA -1 100 1 1571 180 53 39 chr11 59208884 59208961 -91574592 - L1M4 LINE L1 -629 5555 5481 2511 85 0 3 chr11 59208961 59209267 -91574286 - AluSx SINE Alu -7 305 1 1571 180 53 39 chr11 59209267 59209685 -91573868 - L1M4 LINE L1 -703 5481 5071 981 133 0 0 chr11 59209685 59209843 -91573710 + (TTCC)n Simple_repeat Simple_repeat 3 160 0 2285 90 0 4 chr11 59209852 59210130 -91573423 - AluSc SINE Alu -32 277 1 1571 180 53 39 chr11 59210130 59210216 -91573337 - L1M4 LINE L1 -1120 5064 4963 1933 158 16 0 chr11 59210299 59210603 -91572950 - AluSx SINE Alu -3 309 1 1027 188 21 0 chr11 59210619 59210805 -91572748 - AluJo SINE Alu -1 311 122 2435 100 0 0 chr11 59211144 59211453 -91572100 - AluSx SINE Alu -2 310 2 318 233 33 22 chr11 59211453 59211543 -91572010 + MIR SINE MIR 102 192 -70 203 331 86 63 chr11 59211547 59211722 -91571831 + MIR SINE MIR 13 191 -71 1704 181 3 31 chr11 59211766 59211945 -91571608 - AluJb SINE Alu 0 312 143 2138 127 7 7 chr11 59211945 59212253 -91571300 - AluSx SINE Alu -4 308 1 1704 181 3 31 chr11 59212253 59212393 -91571160 - AluJb SINE Alu -169 143 1 648 232 21 57 chr11 59212583 59212777 -91570776 - MIR SINE MIR -47 215 29 1164 163 6 0 chr11 59212890 59213068 -91570485 - AluJb SINE Alu -12 300 122 1783 196 0 0 chr11 59213088 59213379 -91570174 - AluJb SINE Alu -21 291 1 276 286 184 0 chr11 59213517 59213664 -91569889 - MIR SINE MIR -77 185 12 262 302 32 0 chr11 59213664 59213790 -91569763 + MER113 DNA MER1_type? 8 137 -384 225 241 19 0 chr11 59213839 59213893 -91569660 + (TA)n Simple_repeat Simple_repeat 2 56 0 2194 126 0 16 chr11 59213896 59214213 -91569340 - AluSx SINE Alu 0 312 1 294 308 138 6 chr11 59214755 59214914 -91568639 + MIR SINE MIR 13 192 -70 2293 85 3 10 chr11 59215221 59215528 -91568025 - AluY SINE Alu -6 305 1 316 207 110 0 chr11 59216006 59216088 -91567465 + MIR3 SINE MIR 70 160 -48 186 43 0 0 chr11 59216097 59216120 -91567433 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2135 118 0 0 chr11 59216130 59216410 -91567143 - AluSx SINE Alu -32 280 1 280 267 59 15 chr11 59216463 59216598 -91566955 + MER103 DNA DNA 14 154 -12 265 364 69 12 chr11 59216902 59217149 -91566404 + L2 LINE L2 2545 2805 -509 203 257 43 14 chr11 59217199 59217269 -91566284 - MIR SINE MIR -91 117 46 182 186 47 0 chr11 59218247 59218290 -91565263 + MIR SINE MIR 105 149 -113 188 260 20 0 chr11 59218643 59218693 -91564860 + MIR SINE MIR 95 145 -63 1651 187 10 0 chr11 59218719 59219019 -91564534 - AluJo SINE Alu -9 303 1 1701 111 127 12 chr11 59219079 59219357 -91564196 - AluSg SINE Alu 0 307 1 312 64 0 0 chr11 59219369 59219416 -91564137 - MADE1 DNA Mariner 0 80 34 2375 81 3 3 chr11 59219416 59219714 -91563839 + AluSp SINE Alu 1 298 -15 333 324 151 0 chr11 59219952 59220137 -91563416 - MIR SINE MIR -32 230 18 216 288 41 0 chr11 59220667 59220740 -91562813 - MIR SINE MIR -74 188 113 337 283 71 48 chr11 59221037 59221247 -91562306 + MIR SINE MIR 14 222 -40 499 209 269 22 chr11 59221304 59221486 -91562067 + MIR SINE MIR 15 241 -21 2133 97 3 40 chr11 59221492 59221790 -91561763 - AluSg SINE Alu -10 300 14 241 206 10 29 chr11 59221916 59222120 -91561433 + C-rich Low_complexity Low_complexity 1 200 0 564 116 0 0 chr11 59222313 59222399 -91561154 + (TTCC)n Simple_repeat Simple_repeat 1 86 0 364 221 97 9 chr11 59222595 59222708 -91560845 + MER5A DNA MER1_type 60 182 -7 438 292 56 6 chr11 59224497 59224658 -91558895 + MIR SINE MIR 40 208 -54 200 241 19 0 chr11 59226403 59226457 -91557096 + L3 LINE CR1 1180 1234 -343 272 289 266 0 chr11 59226475 59226648 -91556905 + MIR SINE MIR 44 262 0 457 243 171 27 chr11 59226664 59226886 -91556667 + L3 LINE CR1 1277 1530 -47 1662 194 0 29 chr11 59226968 59227278 -91556275 + AluJo SINE Alu 1 301 -11 2410 78 0 31 chr11 59227281 59227602 -91555951 + AluY SINE Alu 1 311 0 225 346 87 0 chr11 59228172 59228276 -91555277 + MIR SINE MIR 63 175 -87 1290 295 71 17 chr11 59228283 59229145 -91554408 - L2 LINE L2 -4 3309 2404 359 311 102 31 chr11 59229328 59229582 -91553971 + L3 LINE CR1 1195 1466 -111 354 239 71 76 chr11 59230324 59230508 -91553045 + MER5A DNA MER1_type 4 186 -3 1194 43 14 0 chr11 59230951 59231090 -91552463 + AluSg/x SINE Alu 160 300 -10 1096 255 47 14 chr11 59231099 59231568 -91551985 + MLT1F1 LTR MaLR 2 567 0 521 212 23 38 chr11 59231634 59231766 -91551787 + MIR SINE MIR 67 196 -66 347 223 88 24 chr11 59231788 59231929 -91551624 + MIR SINE MIR 66 215 -32 726 147 9 0 chr11 59232855 59232971 -91550582 + AluJo SINE Alu 6 122 -190 331 255 16 40 chr11 59232972 59233229 -91550324 - L1MC4 LINE L1 -1134 6931 1998 828 120 0 24 chr11 59233070 59233195 -91550358 + FLAM_A SINE Alu 1 122 -11 307 307 23 0 chr11 59233195 59233244 -91550309 + L1MC4 LINE L1 6649 6702 -1340 228 86 86 0 chr11 59233251 59233321 -91550232 + (TA)n Simple_repeat Simple_repeat 2 77 0 1181 134 11 21 chr11 59233321 59233508 -91550045 + AluJo SINE Alu 125 309 -3 2176 112 0 39 chr11 59233511 59233823 -91549730 + AluSg SINE Alu 1 300 -10 264 293 179 0 chr11 59233829 59233969 -91549584 - MIR SINE MIR -21 241 77 1898 132 55 0 chr11 59234585 59234858 -91548695 + AluSx SINE Alu 3 290 -22 754 290 189 6 chr11 59234983 59235348 -91548205 + L2 LINE L2 2877 3308 -5 259 222 0 0 chr11 59235505 59235559 -91547994 - AluSp SINE Alu -133 170 117 477 289 14 0 chr11 59235660 59235802 -91547751 - L2 LINE L2 -626 2688 2545 919 129 19 0 chr11 59236318 59236473 -91547080 + L1MB1 LINE L1 5968 6125 -43 2013 110 48 0 chr11 59236473 59236746 -91546807 + AluSc SINE Alu 1 286 -23 1902 169 13 3 chr11 59236762 59237064 -91546489 + AluJo SINE Alu 1 305 -7 320 254 9 27 chr11 59237088 59237198 -91546355 + L1MC5 LINE L1 7806 7913 -48 1801 169 14 14 chr11 59237210 59237506 -91546047 + AluJo SINE Alu 11 306 -6 560 185 51 6 chr11 59237689 59237846 -91545707 - L1MD3 LINE L1 0 7995 7832 * 1065 165 59 43 chr11 59237844 59237870 -91545683 - L1MD2 LINE L1 -207 6152 6128 2266 99 0 26 chr11 59237870 59238182 -91545371 - AluSc SINE Alu -5 304 1 2233 83 21 3 chr11 59238182 59238471 -91545082 - AluSg SINE Alu -15 295 1 1065 165 59 43 chr11 59238471 59238697 -91544856 - L1MD2 LINE L1 -230 6129 5895 2208 75 0 45 chr11 59238806 59239098 -91544455 - AluSq SINE Alu -34 279 1 2054 205 29 22 chr11 59239137 59239629 -91543924 + L1ME3 LINE L1 5667 6161 -1 686 226 11 54 chr11 59240152 59240338 -91543215 - MER5B DNA MER1_type 0 178 1 301 289 149 9 chr11 59240990 59241104 -91542449 + MIR3 SINE MIR 27 156 -52 497 298 50 20 chr11 59241667 59241865 -91541688 - MIR SINE MIR -46 216 13 425 322 44 0 chr11 59241874 59242054 -91541499 + MIR SINE MIR 49 236 -26 747 255 120 0 chr11 59242130 59242338 -91541215 + MIR SINE MIR 18 250 -12 261 83 0 0 chr11 59242928 59242964 -91540589 + (TA)n Simple_repeat Simple_repeat 1 36 0 308 213 125 0 chr11 59242964 59243044 -91540509 - L2 LINE L2 -12 3301 3212 274 267 142 8 chr11 59243062 59243081 -91540472 + MIR SINE MIR 13 28 -234 2368 90 3 0 chr11 59243081 59243370 -91540183 + AluSx SINE Alu 1 290 -22 274 267 142 8 chr11 59243370 59243470 -91540083 + MIR SINE MIR 28 148 -114 195 273 18 0 chr11 59243478 59243533 -91540020 - MIR SINE MIR -112 150 95 735 286 46 5 chr11 59243749 59243966 -91539587 + MIR SINE MIR 22 247 -15 222 270 59 118 chr11 59244307 59244681 -91538872 - L2 LINE L2 -338 2976 2625 720 283 94 0 chr11 59244711 59244934 -91538619 - MIR SINE MIR -12 250 7 2221 123 3 0 chr11 59245135 59245436 -91538117 + AluSx SINE Alu 1 302 -10 340 240 19 48 chr11 59245504 59245561 -91537992 + Charlie8 DNA MER1_type 92 146 -2271 2145 133 3 0 chr11 59245561 59245861 -91537692 + AluSx SINE Alu 1 301 -11 340 240 19 48 chr11 59245861 59245907 -91537646 + Charlie8 DNA MER1_type 146 192 -2225 1093 239 79 85 chr11 59246074 59246671 -91536882 + MLT1E LTR MaLR 1 593 0 273 200 0 225 chr11 59246738 59246796 -91536757 - L2 LINE L2 -37 3276 3257 1794 168 6 16 chr11 59246796 59247111 -91536442 + AluJo SINE Alu 1 312 0 273 200 0 225 chr11 59247111 59247172 -91536381 - L2 LINE L2 -56 3257 3184 2277 122 3 0 chr11 59247335 59247639 -91535914 - AluSx SINE Alu -2 310 6 774 143 0 8 chr11 59247755 59247874 -91535679 + FLAM_C SINE Alu 1 118 -15 219 348 27 9 chr11 59247903 59248015 -91535538 - L2 LINE L2 -181 3091 2978 1933 128 14 14 chr11 59248248 59248561 -91534992 + AluSx SINE Alu 3 315 0 509 310 153 18 chr11 59248682 59249133 -91534420 - L2 LINE L2 -474 2840 2329 291 269 51 0 chr11 59249499 59249577 -91533976 + L2 LINE L2 3141 3222 -50 186 71 0 0 chr11 59249586 59249614 -91533939 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 3554 131 8 21 chr11 59249616 59249670 -91533883 - L1MB7 LINE L1 -19 6165 6112 2022 153 3 6 chr11 59249670 59249983 -91533570 + AluJb SINE Alu 1 312 0 3554 131 8 21 chr11 59249983 59250552 -91533001 - L1MB7 LINE L1 -72 6112 5550 2497 87 0 0 chr11 59250573 59250871 -91532682 - AluSx SINE Alu -14 298 1 422 302 81 0 chr11 59250924 59251073 -91532480 - MIR SINE MIR -96 166 6 1816 163 3 38 chr11 59251257 59251577 -91531976 - AluSx SINE Alu -3 309 1 1640 94 65 45 chr11 59251641 59251928 -91531625 - L1PA8A LINE L1 -12 6119 5824 1937 115 4 0 chr11 59251928 59252181 -91531372 - AluSp SINE Alu -59 254 1 1640 94 65 45 chr11 59252181 59252202 -91531351 - L1PA8A LINE L1 -307 5824 5805 396 349 53 72 chr11 59252453 59252760 -91530793 - L2 LINE L2 -1 3271 2971 2024 139 6 25 chr11 59252760 59252897 -91530656 + AluSx SINE Alu 1 139 -173 2441 94 0 3 chr11 59252897 59253205 -91530348 + AluSg SINE Alu 1 307 -3 2024 139 6 25 chr11 59253205 59253384 -91530169 + AluSx SINE Alu 139 311 -1 396 349 53 72 chr11 59253384 59253437 -91530116 - L2 LINE L2 -301 2971 2918 308 302 17 43 chr11 59253452 59253568 -91529985 - L2 LINE L2 -9 3304 3192 1892 128 41 14 chr11 59253742 59254032 -91529521 - AluJb SINE Alu -6 306 9 1974 154 3 3 chr11 59254540 59254838 -91528715 - AluJb SINE Alu -14 298 1 1016 68 0 0 chr11 59254865 59254997 -91528556 - L1PA10 LINE L1 -5 6163 6032 298 253 81 40 chr11 59255068 59255167 -91528386 - MIR SINE MIR -66 142 40 477 271 95 27 chr11 59255182 59255403 -91528150 - MIR SINE MIR -3 259 24 399 275 53 31 chr11 59258252 59258433 -91525120 + MIR SINE MIR 17 203 -59 625 125 0 0 chr11 59258894 59258990 -91524563 - AluSx SINE Alu -14 295 200 1067 143 0 0 chr11 59258990 59259144 -91524409 - AluSx SINE Alu -158 154 1 2244 130 25 62 chr11 59259363 59259846 -91523707 - L1MB8 LINE L1 -6 6172 5708 744 193 14 0 chr11 59259849 59259989 -91523564 + FRAM SINE Alu 1 140 -36 1903 156 0 19 chr11 59260005 59260313 -91523240 - AluJo SINE Alu -10 302 1 486 148 156 44 chr11 59260315 59260450 -91523103 - L1MB8 LINE L1 -493 5691 5542 2162 90 38 3 chr11 59260456 59260745 -91522808 - AluSq SINE Alu -14 299 1 45 34 0 0 chr11 59260753 59260812 -91522741 + AT_rich Low_complexity Low_complexity 1 59 0 489 71 191 0 chr11 59260812 59260896 -91522657 - HY3 scRNA scRNA -1 100 1 303 247 26 0 chr11 59260897 59260974 -91522579 - L1MB8 LINE L1 -629 5555 5477 2544 84 0 3 chr11 59261092 59261402 -91522151 - AluSx SINE Alu -3 309 1 1610 165 60 20 chr11 59261411 59261820 -91521733 - L1MB8 LINE L1 -698 5482 5091 945 136 0 0 chr11 59261820 59261974 -91521579 + (TTCC)n Simple_repeat Simple_repeat 3 156 0 2285 90 0 4 chr11 59261983 59262261 -91521292 - AluSc SINE Alu -32 277 1 1610 165 60 20 chr11 59262261 59262347 -91521206 - L1MB8 LINE L1 -1096 5084 4963 1933 158 16 0 chr11 59262430 59262734 -91520819 - AluSx SINE Alu -3 309 1 1027 188 21 0 chr11 59262750 59262936 -91520617 - AluJo SINE Alu -1 311 122 2419 103 0 0 chr11 59263275 59263585 -91519968 - AluSx SINE Alu -1 311 2 318 233 33 22 chr11 59263585 59263675 -91519878 + MIR SINE MIR 102 192 -70 203 331 86 63 chr11 59263679 59263854 -91519699 + MIR SINE MIR 13 191 -71 1704 181 3 31 chr11 59263898 59264077 -91519476 - AluJb SINE Alu 0 312 143 2138 127 7 7 chr11 59264077 59264385 -91519168 - AluSx SINE Alu -4 308 1 1704 181 3 31 chr11 59264385 59264525 -91519028 - AluJb SINE Alu -169 143 1 648 232 21 57 chr11 59264715 59264909 -91518644 - MIR SINE MIR -47 215 29 1164 163 6 0 chr11 59265022 59265200 -91518353 - AluJb SINE Alu -12 300 122 1783 196 0 0 chr11 59265220 59265511 -91518042 - AluJb SINE Alu -21 291 1 276 286 184 0 chr11 59265649 59265796 -91517757 - MIR SINE MIR -77 185 12 262 302 32 0 chr11 59265796 59265922 -91517631 + MER113 DNA MER1_type? 8 137 -384 225 241 19 0 chr11 59265971 59266025 -91517528 + (TA)n Simple_repeat Simple_repeat 1 55 0 2194 126 0 16 chr11 59266028 59266345 -91517208 - AluSx SINE Alu 0 312 1 294 308 138 6 chr11 59266888 59267047 -91516506 + MIR SINE MIR 13 192 -70 495 251 144 10 chr11 59267265 59267354 -91516199 - Charlie8 DNA MER1_type -2151 266 190 2538 65 0 13 chr11 59267354 59267663 -91515890 - AluY SINE Alu -6 305 1 495 251 144 10 chr11 59267663 59267768 -91515785 - Charlie8 DNA MER1_type -2227 190 46 211 298 18 0 chr11 59267871 59267928 -91515625 + L2 LINE L2 3214 3271 -1 2014 120 3 74 chr11 59267952 59268278 -91515275 + AluJb SINE Alu 1 303 -9 2083 159 0 9 chr11 59268672 59268987 -91514566 - AluJb SINE Alu 0 312 1 408 240 135 42 chr11 59269128 59269320 -91514233 - MIR SINE MIR -20 242 33 298 148 0 19 chr11 59269597 59269651 -91513902 + MIR SINE MIR 210 262 0 793 181 0 0 chr11 59269708 59269841 -91513712 - FLAM_C SINE Alu 0 133 1 245 235 0 0 chr11 59270945 59271013 -91512540 + (TG)n Simple_repeat Simple_repeat 2 69 0 512 224 68 34 chr11 59271037 59271242 -91512311 - L2 LINE L2 -46 3267 3056 322 297 0 18 chr11 59272222 59272333 -91511220 - AluSg/x SINE Alu 0 302 194 12498 117 26 33 chr11 59272445 59272555 -91510998 - L1M1 LINE L1 -4264 3301 3192 2307 103 17 0 chr11 59272555 59272856 -91510697 - AluSp SINE Alu -7 306 1 12498 117 26 33 chr11 59272856 59272996 -91510557 - L1M1 LINE L1 -4373 3192 3053 2541 79 0 0 chr11 59272996 59273300 -91510253 - AluSq SINE Alu -9 304 1 12498 117 26 33 chr11 59273300 59273890 -91509663 - L1M1 LINE L1 -4512 3053 2460 2145 84 0 32 chr11 59273890 59274174 -91509379 - AluY SINE Alu -1 310 36 12498 117 26 33 chr11 59274174 59274306 -91509247 - L1M1 LINE L1 -5105 2460 2329 2223 118 30 0 chr11 59274306 59274610 -91508943 - AluSq SINE Alu 0 313 1 12498 117 26 33 chr11 59274610 59275742 -91507811 - L1M1 LINE L1 -5236 2329 1209 611 153 306 7 chr11 59275744 59275888 -91507665 - MER20 DNA MER1_type -32 187 1 552 209 72 7 chr11 59276002 59276155 -91507398 - MER103 DNA DNA -2 164 2 246 265 0 111 chr11 59276831 59276898 -91506655 + MIR SINE MIR 153 203 -59 2676 55 0 0 chr11 59276898 59277207 -91506346 + AluY SINE Alu 1 309 -2 246 265 0 111 chr11 59277207 59277256 -91506297 + MIR SINE MIR 203 256 -6 2084 137 7 0 chr11 59278194 59278487 -91505066 - AluSx SINE Alu -16 296 2 559 309 101 5 chr11 59279179 59279396 -91504157 - MIR SINE MIR -12 250 13 2288 125 0 0 chr11 59279439 59279743 -91503810 + AluSq SINE Alu 1 304 -9 415 194 186 16 chr11 59279817 59279946 -91503607 - MIR3 SINE MIR -42 166 16 1885 133 23 108 chr11 59280016 59280125 -91503428 - MSTB1 LTR MaLR 0 432 315 2290 103 7 3 chr11 59280125 59280427 -91503126 + AluSp SINE Alu 2 304 -9 1885 133 23 108 chr11 59280427 59280723 -91502830 - MSTB1 LTR MaLR -117 315 70 1802 137 70 3 chr11 59280723 59281008 -91502545 - AluSx SINE Alu 0 312 9 1885 133 23 108 chr11 59281008 59281073 -91502480 - MSTB1 LTR MaLR -362 70 1 2104 113 10 32 chr11 59281204 59281515 -91502038 - AluSp SINE Alu -9 304 1 224 174 43 0 chr11 59281520 59281566 -91501987 - MIR SINE MIR -171 91 44 259 186 0 0 chr11 59281571 59281614 -91501939 - Alu SINE Alu -259 43 1 320 250 71 0 chr11 59281619 59281703 -91501850 - MIR SINE MIR -171 91 2 2965 162 60 36 chr11 59281851 59281948 -91501605 - L1MB3 LINE L1 -2 6181 6088 1518 211 24 0 chr11 59281948 59282237 -91501316 + AluJo SINE Alu 1 296 -16 2965 162 60 36 chr11 59282237 59282804 -91500749 - L1MB3 LINE L1 -95 6088 5501 543 246 96 24 chr11 59282850 59283017 -91500536 - MIR3 SINE MIR -9 199 21 341 282 94 20 chr11 59283750 59283932 -91499621 - MIR SINE MIR -1 261 61 440 145 0 176 chr11 59283948 59283976 -91499577 + MER3 DNA MER1_type 102 133 -76 2257 109 10 0 chr11 59283976 59284270 -91499283 - AluSx SINE Alu -15 297 1 440 145 0 176 chr11 59284270 59284305 -91499248 + MER3 DNA MER1_type 133 133 -76 1842 170 0 3 chr11 59284305 59284605 -91498948 - AluJb SINE Alu -13 299 1 440 145 0 176 chr11 59284605 59284671 -91498882 + MER3 DNA MER1_type 133 209 0 272 182 0 0 chr11 59284636 59284680 -91498873 - MER3 DNA MER1_type -127 82 39 * 2292 108 0 0 chr11 59286354 59286681 -91496872 - AluSx SINE Alu 0 312 1 266 208 0 0 chr11 59286684 59286737 -91496816 - MIR SINE MIR -115 147 95 498 232 88 33 chr11 59287227 59287408 -91496145 - MIR SINE MIR -12 250 60 229 237 41 82 chr11 59287943 59288040 -91495513 - MIR3 SINE MIR -12 196 104 842 134 0 89 chr11 59288142 59288299 -91495254 + FLAM_C SINE Alu 1 143 0 2341 122 3 0 chr11 59288491 59288803 -91494750 + AluSq SINE Alu 1 313 0 1056 269 69 32 chr11 59288865 59289130 -91494423 - L2 LINE L2 0 3313 3026 2318 117 0 0 chr11 59289130 59289429 -91494124 - AluSx SINE Alu -13 299 1 1056 269 69 32 chr11 59289429 59289568 -91493985 - L2 LINE L2 -287 3026 2894 207 306 0 0 chr11 59289743 59289805 -91493748 - MIR SINE MIR -115 147 86 264 247 22 14 chr11 59290273 59290405 -91493148 - MIR SINE MIR -72 190 20 1942 167 0 3 chr11 59290673 59290966 -91492587 - AluJo SINE Alu -20 292 1 401 198 121 11 chr11 59290969 59291060 -91492493 + L2 LINE L2 3213 3313 0 1310 125 49 27 chr11 59291623 59291847 -91491706 - MER30 DNA MER1_type 0 230 2 221 259 11 0 chr11 59292118 59292173 -91491380 + GA-rich Low_complexity Low_complexity 1 97 0 237 314 38 29 chr11 59292331 59292436 -91491117 + MIR SINE MIR 24 129 -79 1802 169 0 26 chr11 59292753 59293055 -91490498 + AluJo SINE Alu 1 294 -18 917 193 23 0 chr11 59293290 59293461 -91490092 - FAM SINE Alu 0 175 1 455 306 104 26 chr11 59293461 59293649 -91489904 - MIR SINE MIR -48 214 12 202 188 0 42 chr11 59293762 59293810 -91489743 + A-rich Low_complexity Low_complexity 1 46 0 256 210 10 90 chr11 59293811 59293911 -91489642 + MER103 DNA DNA 6 97 -69 231 88 0 0 chr11 59293926 59293960 -91489593 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 709 185 8 0 chr11 59293966 59294085 -91489468 - AluJb SINE Alu -192 120 1 270 197 70 0 chr11 59294233 59294304 -91489249 - MIR3 SINE MIR -48 160 85 2459 79 0 0 chr11 59294402 59294694 -91488859 - AluSg SINE Alu -17 293 2 1168 216 121 44 chr11 59295355 59295686 -91487867 + MER113 DNA MER1_type? 7 378 -143 1871 153 14 0 chr11 59295686 59295796 -91487757 + AluJb SINE Alu 15 122 -190 279 0 0 0 chr11 59295796 59295827 -91487726 + (CA)n Simple_repeat Simple_repeat 2 32 0 1871 153 14 0 chr11 59295827 59296003 -91487550 + AluJb SINE Alu 122 305 -7 1168 216 121 44 chr11 59296003 59296083 -91487470 + MER113 DNA MER1_type? 378 450 -71 2211 111 0 0 chr11 59297780 59298091 -91485462 + AluSx SINE Alu 1 312 0 190 350 12 12 chr11 59298092 59298172 -91485381 - L3 LINE CR1 -18 1559 1480 726 251 77 5 chr11 59298240 59298435 -91485118 + MIR SINE MIR 40 248 -14 236 231 123 0 chr11 59298456 59298521 -91485032 - L3 LINE CR1 -174 1403 1331 2463 87 0 0 chr11 59298521 59298819 -91484734 - AluSx SINE Alu -14 298 1 421 231 51 64 chr11 59298902 59299006 -91484547 - MIR SINE MIR -95 167 64 2456 101 0 0 chr11 59299006 59299312 -91484241 + AluSq SINE Alu 2 307 -6 421 231 51 64 chr11 59299312 59299363 -91484190 - MIR SINE MIR -198 64 14 2266 123 0 7 chr11 59299577 59299887 -91483666 - AluSq SINE Alu -5 308 1 180 244 0 0 chr11 59299893 59299934 -91483619 - MIR SINE MIR -61 147 107 326 258 103 45 chr11 59299950 59300051 -91483502 + MIR SINE MIR 35 129 -133 1992 167 3 0 chr11 59300051 59300351 -91483202 + AluJb SINE Alu 1 301 -11 326 258 103 45 chr11 59300351 59300453 -91483100 + MIR SINE MIR 129 240 -22 1423 204 34 76 chr11 59300460 59300867 -91482686 + MLT1B LTR MaLR 1 390 0 207 0 0 0 chr11 59301126 59301149 -91482404 + (TG)n Simple_repeat Simple_repeat 1 23 0 2151 100 35 3 chr11 59301237 59301526 -91482027 - AluSp SINE Alu -15 298 1 245 191 24 83 chr11 59301965 59302049 -91481504 + L2 LINE L2 3235 3313 0 588 249 118 0 chr11 59302223 59302392 -91481161 - MIR SINE MIR -23 239 51 2347 106 0 0 chr11 59302418 59302720 -91480833 - AluSq SINE Alu -11 302 1 2461 80 3 0 chr11 59302732 59303033 -91480520 - AluSx SINE Alu -9 303 2 203 185 19 19 chr11 59303118 59303172 -91480381 - MIR SINE MIR -112 96 43 1667 113 105 4 chr11 59303908 59304174 -91479379 + AluSx SINE Alu 10 302 -10 288 111 0 0 chr11 59305109 59305154 -91478399 + (A)n Simple_repeat Simple_repeat 1 45 0 933 170 32 63 chr11 59305291 59305544 -91478009 - LTR37A LTR ERV1 0 426 182 210 37 0 0 chr11 59305702 59305729 -91477824 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2300 77 7 20 chr11 59305731 59306029 -91477524 - AluSg SINE Alu -16 294 1 1751 195 3 0 chr11 59306037 59306324 -91477229 - AluJb SINE Alu -24 288 1 901 179 12 46 chr11 59306504 59306677 -91476876 + FAM SINE Alu 1 167 -8 486 232 72 50 chr11 59306941 59307084 -91476469 - MER102b DNA MER1_type -1116 312 163 1828 169 0 19 chr11 59307084 59307397 -91476156 - AluJo SINE Alu -3 309 3 486 232 72 50 chr11 59307397 59307434 -91476119 - MER102b DNA MER1_type -1265 163 128 2050 112 53 3 chr11 59307549 59307834 -91475719 - AluSx SINE Alu -13 299 1 341 299 28 0 chr11 59308021 59308165 -91475388 - L1MC4a LINE L1 -1865 5943 5796 43 20 0 0 chr11 59308165 59308215 -91475338 + AT_rich Low_complexity Low_complexity 1 50 0 821 118 0 0 chr11 59308215 59308325 -91475228 - FLAM_C SINE Alu -25 118 9 590 307 78 4 chr11 59308330 59308574 -91474979 - L1MC4a LINE L1 -2002 5806 5545 526 105 0 0 chr11 59308574 59308650 -91474903 - Alu SINE Alu -5 306 231 350 257 14 0 chr11 59308651 59308725 -91474828 - L1MC4a LINE L1 -2258 5550 5476 407 241 60 15 chr11 59309626 59309759 -91473794 - L1MC4a LINE L1 -2338 5470 5332 2236 103 0 0 chr11 59309764 59310046 -91473507 - AluSx SINE Alu -9 303 22 2283 98 3 29 chr11 59310506 59310822 -91472731 - AluSx SINE Alu -4 308 1 255 269 0 0 chr11 59310847 59310899 -91472654 - AluSp SINE Alu -132 171 120 298 180 197 0 chr11 59310913 59310974 -91472579 + MER34C LTR ERV1 3 75 -510 913 181 81 1 chr11 59310974 59311265 -91472288 + MER34C LTR ERV1 248 583 -2 278 167 0 175 chr11 59311646 59311735 -91471818 + MIR3 SINE MIR 88 150 -58 2412 156 30 25 chr11 59311735 59312166 -91471387 + Tigger2a DNA MER2_type 2 434 0 278 167 0 175 chr11 59312166 59312202 -91471351 + MIR3 SINE MIR 150 191 -17 225 0 0 0 chr11 59312372 59312397 -91471156 + (T)n Simple_repeat Simple_repeat 1 25 0 2079 152 0 0 chr11 59312525 59312834 -91470719 - AluJo SINE Alu -3 309 1 892 120 0 0 chr11 59312834 59312967 -91470586 + L1M1 LINE L1 3272 3404 -4161 269 174 0 0 chr11 59312968 59313014 -91470539 + MER20 DNA MER1_type 170 215 -4 537 282 34 31 chr11 59313511 59313704 -91469849 + MIR SINE MIR 21 214 -48 182 375 61 18 chr11 59314996 59315276 -91468277 + L2 LINE L2 2487 2778 -536 676 309 106 53 chr11 59315670 59316187 -91467366 + L2 LINE L2 2712 3259 -13 216 352 94 0 chr11 59317176 59317304 -91466249 - L2 LINE L2 -1 3271 3132 397 301 145 5 chr11 59317704 59317890 -91465663 + MIR SINE MIR 1 212 -50 404 299 31 0 chr11 59318880 59319007 -91464546 - MIR SINE MIR -12 250 120 462 314 163 4 chr11 59319186 59319444 -91464109 + MLT1J2 LTR MaLR 109 407 -43 292 319 17 17 chr11 59321734 59321853 -91461700 - MIR3 SINE MIR -1 207 89 338 308 67 10 chr11 59321952 59322056 -91461497 - L2 LINE L2 -3 3269 3160 25 0 0 0 chr11 59322393 59322418 -91461135 + AT_rich Low_complexity Low_complexity 1 25 0 211 309 61 61 chr11 59322483 59322713 -91460840 + MIR SINE MIR 6 235 -27 425 289 45 13 chr11 59323154 59323310 -91460243 - MIR SINE MIR -51 211 51 237 270 132 13 chr11 59324237 59324389 -91459164 + L2 LINE L2 3140 3309 -4 222 323 38 51 chr11 59324389 59324547 -91459006 + L2 LINE L2 2621 2776 -538 855 132 17 29 chr11 59325129 59325303 -91458250 + L1MB4 LINE L1 6008 6179 -1 1002 108 19 13 chr11 59326407 59326565 -91456988 + LTR38-int LTR ERV1 938 1096 -690 279 315 0 47 chr11 59326707 59326848 -91456705 - L2 LINE L2 -563 2751 2618 681 237 58 0 chr11 59326848 59327021 -91456532 - MER5A DNA MER1_type 0 189 7 1671 190 60 7 chr11 59327049 59327383 -91456170 - MLT1A1 LTR MaLR 0 365 13 2685 21 0 0 chr11 59327385 59327676 -91455877 + AluYa5 SINE Alu 1 291 -20 1230 156 57 5 chr11 59328043 59328255 -91455298 + MER30 DNA MER1_type 6 228 -2 663 106 10 14 chr11 59328361 59328469 -91455084 - L1PA13 LINE L1 -180 5974 5862 1428 189 82 25 chr11 59328693 59329010 -91454543 + MLT2C1 LTR ERVL 1 335 -62 288 313 114 8 chr11 59329717 59329848 -91453705 + MIR3 SINE MIR 1 145 -63 1683 177 20 14 chr11 59330389 59330683 -91452870 + AluSx SINE Alu 1 296 -16 200 383 75 0 chr11 59331854 59331948 -91451605 + L2 LINE L2 3145 3245 -27 193 296 19 0 chr11 59332335 59332389 -91451164 - L2 LINE L2 -8 3264 3210 216 0 0 0 chr11 59332777 59332801 -91450752 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1542 158 27 34 chr11 59335140 59335438 -91448115 + AluSx SINE Alu 1 296 -16 232 254 0 16 chr11 59335502 59335565 -91447988 + (CATA)n Simple_repeat Simple_repeat 1 62 0 518 286 15 8 chr11 59335565 59335698 -91447855 - LTR49-int LTR ERV1 -4231 2100 1967 1028 128 0 0 chr11 59335705 59335838 -91447715 - AluSq/x SINE Alu -180 133 1 1338 154 41 161 chr11 59335839 59336027 -91447526 - LTR49-int LTR ERV1 -4350 1981 1772 2050 133 19 10 chr11 59336027 59336336 -91447217 + AluJb SINE Alu 1 312 0 1338 154 41 161 chr11 59336336 59336510 -91447043 - LTR49-int LTR ERV1 -4559 1772 1679 2406 77 7 3 chr11 59336510 59336809 -91446744 + AluSg SINE Alu 1 300 -10 1338 154 41 161 chr11 59336809 59336885 -91446668 - LTR49-int LTR ERV1 -4652 1679 1595 1150 182 6 63 chr11 59336887 59337205 -91446348 + AluSq SINE Alu 1 300 -3 715 135 0 0 chr11 59337339 59337443 -91446110 - FLAM_C SINE Alu -35 108 5 2270 117 0 7 chr11 59337548 59337855 -91445698 - AluSx SINE Alu -7 305 1 1189 266 10 14 chr11 59338043 59338336 -91445217 - MLT1H LTR MaLR -245 304 13 28 0 0 0 chr11 59338597 59338625 -91444928 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr11 59338677 59338707 -91444846 + (CA)n Simple_repeat Simple_repeat 2 31 0 2145 133 10 7 chr11 59338979 59339281 -91444272 - AluSx SINE Alu -9 303 1 249 276 0 13 chr11 59339508 59339584 -91443969 - MIR SINE MIR -5 257 183 979 172 0 13 chr11 59340338 59340495 -91443058 + AluJb SINE Alu 3 157 -155 1914 183 0 6 chr11 59341116 59341427 -91442126 + AluJb SINE Alu 1 309 -3 766 137 14 7 chr11 59341439 59341578 -91441975 + GA-rich Low_complexity Low_complexity 2 141 0 253 271 62 42 chr11 59342562 59342658 -91440895 + MIR SINE MIR 28 125 -137 2257 92 17 0 chr11 59342730 59343024 -91440529 + AluSp SINE Alu 1 299 -14 281 326 43 14 chr11 59343053 59343194 -91440359 + MIR SINE MIR 112 256 -6 371 173 269 10 chr11 59345579 59345683 -91437870 + FLAM_C SINE Alu 3 133 0 2031 123 0 36 chr11 59346413 59346715 -91436838 - AluSx SINE Alu -21 291 1 23 0 0 0 chr11 59346781 59346804 -91436749 + AT_rich Low_complexity Low_complexity 1 23 0 2237 110 7 3 chr11 59349585 59349884 -91433669 - AluSx SINE Alu -12 300 1 2311 112 0 0 chr11 59350242 59350547 -91433006 - AluSx SINE Alu -7 305 1 2050 132 0 3 chr11 59350693 59350989 -91432564 - AluSq SINE Alu 0 313 19 2012 144 0 0 chr11 59351016 59351324 -91432229 + AluSx SINE Alu 1 308 0 1712 49 9 13 chr11 59351437 59351662 -91431891 - L1PA4 LINE L1 -3 6152 5929 2234 108 0 9 chr11 59352249 59352564 -91430989 - AluSx SINE Alu 0 312 1 1958 95 6 88 chr11 59352572 59352889 -91430664 - AluSc SINE Alu -17 292 2 441 263 53 48 chr11 59352924 59353133 -91430420 - MIR SINE MIR -24 238 29 3196 108 16 0 chr11 59353173 59353616 -91429937 - MLT2A2 LTR ERVL -2 451 2 6386 73 17 7 chr11 59353617 59354441 -91429112 - HERVL-A2 LTR ERVL 0 5654 4823 219 111 32 16 chr11 59355296 59355359 -91428194 + GA-rich Low_complexity Low_complexity 1 64 0 2481 91 3 0 chr11 59360452 59360761 -91422792 + AluSx SINE Alu 1 310 -2 553 314 26 93 chr11 59360917 59361261 -91422292 - L2 LINE L2 0 3272 2952 1397 171 78 11 chr11 59361315 59361584 -91421969 + AluJo SINE Alu 1 287 -25 1834 114 122 0 chr11 59361788 59362059 -91421494 + AluSx SINE Alu 5 308 -4 2380 92 0 7 chr11 59362556 59362861 -91420692 - AluSx SINE Alu -9 303 1 368 307 109 10 chr11 59363482 59363674 -91419879 + MIR SINE MIR 50 260 -2 248 111 22 0 chr11 59365793 59365838 -91417715 + (CA)n Simple_repeat Simple_repeat 1 46 0 210 248 0 91 chr11 59366410 59366531 -91417022 + C-rich Low_complexity Low_complexity 2 111 0 21 36 0 0 chr11 59366551 59366579 -91416974 + GC_rich Low_complexity Low_complexity 1 28 0 326 271 74 16 chr11 59367435 59367493 -91416060 + MIR3 SINE MIR 30 83 -125 1642 136 4 0 chr11 59367493 59367728 -91415825 + AluJo SINE Alu 1 236 -76 2148 128 0 0 chr11 59367728 59368017 -91415536 + AluSq SINE Alu 4 292 -21 326 271 74 16 chr11 59368017 59368079 -91415474 + MIR3 SINE MIR 82 158 -50 287 93 0 56 chr11 59368081 59368135 -91415418 + MER3 DNA MER1_type 1 51 -158 713 171 50 0 chr11 59368703 59368843 -91414710 + MER3 DNA MER1_type 58 204 -5 1800 144 34 17 chr11 59368892 59369183 -91414370 - AluJo SINE Alu -11 301 6 2181 96 35 0 chr11 59369204 59369486 -91414067 - AluSg SINE Alu -18 292 1 229 331 55 55 chr11 59370513 59370770 -91412783 - L2 LINE L2 -189 3083 2827 212 245 102 0 chr11 59371448 59371497 -91412056 - L2 LINE L2 -215 3057 3004 1780 130 11 128 chr11 59371656 59372009 -91411544 - AluJo SINE Alu 0 312 1 2135 103 68 0 chr11 59372250 59372542 -91411011 + AluSp SINE Alu 1 312 -1 1179 183 9 39 chr11 59372677 59372907 -91410646 + MER58A DNA MER1_type 1 223 -1 1988 127 33 0 chr11 59373127 59373437 -91410116 - AluSq SINE Alu 0 319 1 562 335 92 20 chr11 59373441 59373841 -91409712 + L2 LINE L2 1816 2244 -1070 260 298 180 22 chr11 59373915 59374093 -91409460 + L2 LINE L2 2046 2251 -1063 1177 280 100 36 chr11 59374134 59374295 -91409258 + MLT1K LTR MaLR 2 151 -437 2253 202 100 22 chr11 59374295 59374845 -91408708 - MLT1E LTR MaLR 0 593 1 1177 280 100 36 chr11 59374845 59375130 -91408423 + MLT1K LTR MaLR 151 492 -96 2368 90 3 6 chr11 59375130 59375442 -91408111 - AluY SINE Alu 0 311 1 1177 280 100 36 chr11 59375442 59375544 -91408009 + MLT1K LTR MaLR 492 586 -2 205 232 121 71 chr11 59375616 59375715 -91407838 + L2 LINE L2 2370 2473 -841 2257 129 0 0 chr11 59376300 59376611 -91406942 - AluSx SINE Alu -1 311 1 1023 101 0 14 chr11 59376611 59376749 -91406804 - AluSq/x SINE Alu -176 136 1 1984 161 125 10 chr11 59376876 59377260 -91406293 + MSTA LTR MaLR 1 428 0 192 284 86 49 chr11 59377434 59377515 -91406038 + L2 LINE L2 3102 3185 -87 288 272 117 0 chr11 59378173 59378276 -91405277 + L2 LINE L2 3199 3313 0 589 114 0 0 chr11 59378288 59378367 -91405186 - AluS SINE Alu -232 80 2 * 682 154 39 23 chr11 59378360 59378385 -91405168 + AluJo SINE Alu 107 130 -182 2108 101 0 0 chr11 59378385 59378652 -91404901 + AluSg SINE Alu 33 299 -11 682 154 39 23 chr11 59378652 59378756 -91404797 + AluJo SINE Alu 130 238 -74 1042 90 5 101 chr11 59378756 59378944 -91404609 + MER51B LTR ERV1 3 172 -205 1741 111 0 4 chr11 59378944 59379179 -91404374 - AluSx SINE Alu -78 234 1 2139 95 15 4 chr11 59379621 59379925 -91403628 + AluSq SINE Alu 7 313 0 2229 92 3 7 chr11 59380216 59380535 -91403018 + AluSx SINE Alu 1 318 0 277 266 64 55 chr11 59380572 59380681 -91402872 - L2 LINE L2 -1 3271 3162 1954 153 0 26 chr11 59381045 59381358 -91402195 - AluJb SINE Alu -7 305 1 420 196 0 31 chr11 59381384 59381481 -91402072 - 7SLRNA srpRNA srpRNA -16 304 211 293 274 64 105 chr11 59381662 59381721 -91401832 + MIR SINE MIR 47 107 -155 1260 89 0 0 chr11 59381721 59381901 -91401652 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 293 274 64 105 chr11 59381901 59381916 -91401637 + MIR SINE MIR 107 121 -141 1959 183 0 6 chr11 59381916 59382227 -91401326 - AluJb SINE Alu -3 309 1 293 274 64 105 chr11 59382227 59382370 -91401183 + MIR SINE MIR 121 256 -6 1043 164 0 12 chr11 59382842 59383007 -91400546 - AluJb SINE Alu -149 163 1 2300 127 0 0 chr11 59383046 59383354 -91400199 + AluSg SINE Alu 1 308 -2 237 255 32 147 chr11 59383764 59383839 -91399714 + MIR SINE MIR 15 64 -198 1989 134 29 0 chr11 59383839 59384114 -91399439 - AluSx SINE Alu -21 291 9 237 255 32 147 chr11 59384114 59384195 -91399358 + MIR SINE MIR 64 153 -109 281 276 0 13 chr11 59384874 59384950 -91398603 + MIR SINE MIR 183 257 -5 2175 133 10 7 chr11 59385177 59385479 -91398074 + AluSx SINE Alu 1 303 -9 288 0 0 0 chr11 59385752 59385784 -91397769 + (TG)n Simple_repeat Simple_repeat 2 33 0 28 0 0 0 chr11 59385836 59385864 -91397689 + AT_rich Low_complexity Low_complexity 1 28 0 1100 266 10 14 chr11 59386125 59386418 -91397135 + MLT1H LTR MaLR 13 304 -245 2301 121 0 6 chr11 59386606 59386919 -91396634 + AluSx SINE Alu 1 311 -1 1890 156 3 23 chr11 59387018 59387122 -91396431 + AluJo SINE Alu 5 110 -202 2083 130 3 10 chr11 59387122 59387423 -91396130 - AluSx SINE Alu -13 299 1 1890 156 3 23 chr11 59387423 59387625 -91395928 + AluJo SINE Alu 110 305 -7 1919 160 0 3 chr11 59387730 59388023 -91395530 - AluSx SINE Alu -20 292 1 297 296 83 0 chr11 59388195 59388303 -91395250 + MIR SINE MIR 72 188 -74 920 152 0 0 chr11 59388560 59388711 -91394842 + MLT2B1 LTR ERVL 1 151 -369 2227 117 13 0 chr11 59388711 59389011 -91394542 + AluSx SINE Alu 1 304 -8 1347 136 5 0 chr11 59389011 59389195 -91394358 + AluSp SINE Alu 109 293 -20 231 306 82 11 chr11 59389195 59389334 -91394219 + MIR SINE MIR 37 224 -38 449 237 131 88 chr11 59389565 59389839 -91393714 + MLT1H LTR MaLR 264 549 0 1813 179 0 0 chr11 59389910 59390201 -91393352 + AluJo SINE Alu 21 311 -1 2725 200 106 35 chr11 59391150 59391886 -91391667 + MER21B LTR ERV1 19 806 -57 2300 117 0 7 chr11 59392023 59392332 -91391221 + AluSx SINE Alu 1 307 -5 2375 72 0 44 chr11 59392353 59392671 -91390882 + AluY SINE Alu 1 304 -7 195 368 0 0 chr11 59392760 59392828 -91390725 - L3b LINE CR1 -121 1462 1395 336 254 54 115 chr11 59392847 59393044 -91390509 + MIR SINE MIR 19 206 -56 262 298 60 11 chr11 59393545 59393656 -91389897 + MIR SINE MIR 12 130 -78 2421 81 7 0 chr11 59393845 59394140 -91389413 + AluSc SINE Alu 7 303 -6 1084 123 73 78 chr11 59394201 59394420 -91389133 + MER20 DNA MER1_type 1 218 -1 825 237 0 37 chr11 59395132 59395322 -91388231 + FRAM SINE Alu 1 176 0 2279 112 0 3 chr11 59395477 59395773 -91387780 - AluSx SINE Alu -17 295 1 2167 141 3 0 chr11 59395775 59396073 -91387480 - AluSx SINE Alu -13 299 1 2165 129 3 3 chr11 59396257 59396566 -91386987 + AluSx SINE Alu 1 309 -3 2163 118 3 0 chr11 59397111 59397400 -91386153 + AluSx SINE Alu 1 290 -22 1070 283 72 25 chr11 59397467 59397867 -91385686 - L2 LINE L2 0 3313 2895 248 192 0 19 chr11 59399190 59399242 -91384311 - MIR3 SINE MIR -53 155 105 1194 101 0 3 chr11 59399539 59399767 -91383786 + AluSx SINE Alu 1 294 -16 1481 184 28 21 chr11 59400055 59400337 -91383216 - AluJo SINE Alu -16 296 13 2050 116 63 0 chr11 59400914 59401199 -91382354 - AluSx SINE Alu -9 303 1 2417 77 0 3 chr11 59401210 59401510 -91382043 - AluY SINE Alu -12 299 1 2244 95 0 17 chr11 59401510 59401805 -91381748 - AluSg SINE Alu -20 290 1 2281 122 3 3 chr11 59401805 59402116 -91381437 - AluSq SINE Alu -2 311 1 388 197 87 71 chr11 59402127 59402254 -91381299 - FLAM_C SINE Alu -4 129 1 2589 71 0 0 chr11 59402285 59402593 -91380960 - AluSg SINE Alu -2 308 1 1839 146 86 0 chr11 59403188 59403468 -91380085 - AluSg SINE Alu -6 304 1 2296 97 0 10 chr11 59403651 59403951 -91379602 - AluSg SINE Alu -13 297 1 420 214 48 19 chr11 59403967 59404070 -91379483 - MIR SINE MIR -89 173 68 2430 79 0 0 chr11 59404104 59404395 -91379158 - AluSx SINE Alu -16 296 6 202 257 0 14 chr11 59404888 59404962 -91378591 + (TGGG)n Simple_repeat Simple_repeat 1 73 0 * 275 262 8 24 chr11 59404916 59405042 -91378511 + (TTGG)n Simple_repeat Simple_repeat 1 124 0 248 154 19 19 chr11 59405600 59405652 -91377901 - MER112 DNA MER1_type -1 259 208 219 167 0 0 chr11 59405683 59405725 -91377828 + GA-rich Low_complexity Low_complexity 4 45 0 996 170 57 38 chr11 59405738 59405950 -91377603 + MER20 DNA MER1_type 1 216 -3 353 275 76 30 chr11 59405954 59406085 -91377468 - MIR SINE MIR -112 150 14 237 65 0 0 chr11 59406121 59406152 -91377401 + (CA)n Simple_repeat Simple_repeat 1 31 0 213 289 73 83 chr11 59406387 59406591 -91376962 - MIR SINE MIR -50 212 11 24 32 0 0 chr11 59406869 59406900 -91376653 + GC_rich Low_complexity Low_complexity 1 31 0 183 316 102 0 chr11 59407740 59407838 -91375715 - MIR SINE MIR -70 192 85 198 0 0 0 chr11 59408000 59408022 -91375531 + (A)n Simple_repeat Simple_repeat 1 22 0 2073 113 17 3 chr11 59408025 59408316 -91375237 + AluSx SINE Alu 1 295 -17 1030 176 0 21 chr11 59408492 59408679 -91374874 + AluJo SINE Alu 122 304 -8 225 176 8 136 chr11 59408691 59408816 -91374737 + MER53 DNA DNA 81 189 0 608 274 54 5 chr11 59409277 59409463 -91374090 - MIR SINE MIR -56 206 12 2219 129 10 0 chr11 59410127 59410436 -91373117 + AluSx SINE Alu 1 312 0 745 204 6 18 chr11 59410500 59410667 -91372886 - MER105 DNA DNA -38 166 2 373 208 176 135 chr11 59410669 59410828 -91372725 + LTR37B LTR ERV1 114 265 -203 2545 158 37 41 chr11 59410828 59411077 -91372476 - MER66B LTR ERV1 0 486 237 1981 133 3 3 chr11 59411077 59411403 -91372150 + AluSq SINE Alu 1 326 0 2545 158 37 41 chr11 59411403 59411640 -91371913 - MER66B LTR ERV1 -249 237 1 373 208 176 135 chr11 59411640 59411700 -91371853 + LTR37B LTR ERV1 265 321 -147 261 0 0 0 chr11 59411700 59411729 -91371824 + (CA)n Simple_repeat Simple_repeat 1 29 0 373 208 176 135 chr11 59411729 59411849 -91371704 + LTR37B LTR ERV1 321 468 0 2096 132 0 3 chr11 59412413 59412702 -91370851 + AluJb SINE Alu 3 290 -22 2311 92 0 0 chr11 59412763 59413068 -91370485 + AluSq SINE Alu 1 305 0 2300 73 0 13 chr11 59413219 59413521 -91370032 - AluY SINE Alu -13 298 1 445 310 0 13 chr11 59413524 59413679 -91369874 - L1MC4a LINE L1 -1926 5882 5730 1491 75 5 45 chr11 59414075 59414304 -91369249 - AluY SINE Alu 0 311 91 1010 123 182 6 chr11 59414311 59414481 -91369072 + AluSg/x SINE Alu 104 303 -9 841 227 22 44 chr11 59414499 59414772 -91368781 - L1M4 LINE L1 -1404 4742 4476 240 111 0 0 chr11 59414772 59414808 -91368745 - Alu SINE Alu -266 36 1 2417 114 19 21 chr11 59414827 59415203 -91368350 + THE1C LTR MaLR 1 375 0 2305 107 0 0 chr11 59415333 59415623 -91367930 + AluSg SINE Alu 1 290 -20 693 261 35 5 chr11 59415865 59416068 -91367485 + L2 LINE L2 2487 2695 -619 185 108 27 0 chr11 59416074 59416111 -91367442 + (TATAA)n Simple_repeat Simple_repeat 3 40 0 1932 107 43 47 chr11 59416132 59416432 -91367121 - AluSx SINE Alu -13 299 1 2210 141 123 10 chr11 59416623 59417006 -91366547 - MSTA LTR MaLR 0 428 3 5034 106 8 74 chr11 59417008 59417885 -91365668 - MSTA-int LTR MaLR 0 1580 762 1183 173 108 16 chr11 59417893 59418142 -91365411 - MSTA LTR MaLR -156 272 1 211 250 125 0 chr11 59418145 59418217 -91365336 + L2 LINE L2 2934 3014 -299 2037 135 3 3 chr11 59418222 59418518 -91365035 - AluJb SINE Alu -11 301 6 341 85 0 0 chr11 59418518 59418565 -91364988 - THE1-int LTR MaLR -569 1011 965 499 305 112 54 chr11 59418587 59418814 -91364739 + L2 LINE L2 3033 3245 -68 369 0 0 0 chr11 59418814 59418855 -91364698 + (CA)n Simple_repeat Simple_repeat 2 42 0 2074 130 0 0 chr11 59418861 59419138 -91364415 - AluJb SINE Alu -31 281 5 499 305 112 54 chr11 59419138 59419162 -91364391 + L2 LINE L2 3249 3306 -7 294 232 14 0 chr11 59419576 59419645 -91363908 + tRNA-Gly-GGC tRNA tRNA 2 71 -3 305 214 0 0 chr11 59419655 59419711 -91363842 + L2 LINE L2 3217 3272 0 2660 58 0 0 chr11 59420775 59421086 -91362467 - AluY SINE Alu 0 311 1 21 0 0 0 chr11 59421088 59421109 -91362444 + AT_rich Low_complexity Low_complexity 1 21 0 220 208 0 42 chr11 59421427 59421475 -91362078 + MIR SINE MIR 106 151 -57 350 197 82 41 chr11 59421477 59421624 -91361929 + MER113 DNA MER1_type? 43 195 -326 256 216 16 139 chr11 59421640 59421756 -91361797 - ORSL DNA AcHobo -28 247 118 2255 128 3 0 chr11 59421756 59422062 -91361491 + AluSx SINE Alu 1 307 -5 2312 74 7 3 chr11 59422063 59422346 -91361207 + AluSx SINE Alu 2 285 -27 256 216 16 139 chr11 59422346 59422421 -91361132 - ORSL DNA AcHobo -156 119 78 2207 101 0 24 chr11 59422435 59422733 -91360820 + AluSx SINE Alu 1 291 -21 1347 151 0 19 chr11 59422733 59422932 -91360621 - AluJo SINE Alu -18 294 98 322 197 0 0 chr11 59422932 59422993 -91360560 - ORSL DNA AcHobo -214 61 1 802 228 100 14 chr11 59423009 59423298 -91360255 + MER113 DNA MER1_type? 206 519 -2 555 276 67 67 chr11 59423361 59423535 -91360018 - MIR SINE MIR -19 243 67 2249 116 3 0 chr11 59423535 59423837 -91359716 + AluSq SINE Alu 1 303 -10 555 276 67 67 chr11 59423837 59423901 -91359652 - MIR SINE MIR -194 68 5 2284 116 0 28 chr11 59424036 59424356 -91359197 + AluSx SINE Alu 2 312 0 31 0 0 0 chr11 59424356 59424387 -91359166 + AT_rich Low_complexity Low_complexity 1 31 0 2250 121 0 13 chr11 59424490 59424805 -91358748 - AluSx SINE Alu -1 311 1 310 342 53 59 chr11 59425024 59425211 -91358342 + L2 LINE L2 3049 3234 -38 636 211 7 49 chr11 59425622 59425764 -91357789 - FLAM_C SINE Alu -1 142 7 2190 118 0 0 chr11 59426116 59426412 -91357141 - AluSx SINE Alu -16 296 1 829 127 71 0 chr11 59427029 59427155 -91356398 - AluSq/x SINE Alu -178 135 1 189 333 69 10 chr11 59427161 59427263 -91356290 + L2 LINE L2 1473 1580 -1734 572 107 0 0 chr11 59427286 59427361 -91356192 - AluSg/x SINE Alu -30 282 208 523 301 179 23 chr11 59427362 59427714 -91355839 + L2 LINE L2 2313 2719 -595 1774 122 20 0 chr11 59427721 59427967 -91355586 + AluSx SINE Alu 26 276 -36 517 212 5 33 chr11 59427974 59428158 -91355395 + GA-rich Low_complexity Low_complexity 1 179 0 2183 84 10 17 chr11 59428188 59428484 -91355069 + AluSp SINE Alu 1 294 -19 724 169 0 34 chr11 59428560 59428678 -91354875 + FLAM_A SINE Alu 2 115 -18 2371 104 0 13 chr11 59428678 59428986 -91354567 - AluSq SINE Alu -9 304 1 797 188 60 0 chr11 59429021 59429170 -91354383 - AluSg/x SINE Alu -18 292 135 805 273 222 14 chr11 59429181 59429632 -91353921 + L2 LINE L2 2771 3313 0 2113 107 7 14 chr11 59429964 59430254 -91353299 + AluSg SINE Alu 1 288 -22 23 33 0 0 chr11 59430409 59430439 -91353114 + AT_rich Low_complexity Low_complexity 1 30 0 2153 114 7 0 chr11 59431600 59431890 -91351663 - AluSx SINE Alu -20 292 1 2237 112 0 16 chr11 59432874 59433178 -91350375 + AluSx SINE Alu 1 299 -13 834 178 0 0 chr11 59433189 59433324 -91350229 + AluJb SINE Alu 1 135 -177 2115 114 0 33 chr11 59433324 59433658 -91349895 + AluSx SINE Alu 1 324 0 389 264 202 17 chr11 59433683 59433861 -91349692 + L2 LINE L2 3103 3313 0 258 265 78 49 chr11 59434019 59434121 -91349432 + MIR SINE MIR 17 121 -87 260 195 49 73 chr11 59434986 59435068 -91348485 + L2 LINE L2 3193 3272 0 234 203 0 85 chr11 59435272 59435331 -91348222 + MIR SINE MIR 65 118 -90 839 92 0 0 chr11 59435335 59435444 -91348109 - AluJb SINE Alu -7 305 197 403 279 18 9 chr11 59435452 59435563 -91347990 + MIR SINE MIR 125 236 -26 375 256 131 7 chr11 59435676 59435813 -91347740 - MIR SINE MIR -82 180 27 2398 79 0 0 chr11 59435836 59436128 -91347425 + AluSx SINE Alu 1 292 -20 2520 65 0 3 chr11 59436138 59436447 -91347106 + AluY SINE Alu 1 308 -3 473 236 32 24 chr11 59436449 59436572 -91346981 - MIR SINE MIR -11 251 128 198 0 0 0 chr11 59436770 59436792 -91346761 + (T)n Simple_repeat Simple_repeat 1 22 0 28 29 0 0 chr11 59436805 59436840 -91346713 + GC_rich Low_complexity Low_complexity 1 35 0 902 98 0 8 chr11 59436977 59437109 -91346444 + MER1B DNA MER1_type 209 339 0 235 222 161 0 chr11 59437135 59437216 -91346337 + L1MC5 LINE L1 7832 7925 -36 265 262 146 10 chr11 59437245 59437348 -91346205 - MLT1J1 LTR MaLR -124 322 206 2214 113 0 25 chr11 59437358 59437677 -91345876 + AluY SINE Alu 1 311 0 450 112 15 29 chr11 59437678 59437816 -91345737 + MER4B-int LTR ERV1 4634 4860 -1898 1308 117 108 5 chr11 59437849 59438062 -91345491 + MER4B-int LTR ERV1 5854 6088 -670 2294 111 0 3 chr11 59438063 59438360 -91345193 + AluSx SINE Alu 1 296 -16 2109 110 3 14 chr11 59438518 59438809 -91344744 - AluSg SINE Alu -22 288 1 819 271 222 14 chr11 59439141 59439592 -91343961 - L2 LINE L2 0 3313 2771 797 188 60 0 chr11 59439603 59439752 -91343801 + AluSg/x SINE Alu 135 292 -18 2191 109 0 26 chr11 59439787 59440099 -91343454 + AluSq SINE Alu 1 304 -9 724 169 0 34 chr11 59440099 59440217 -91343336 - FLAM_A SINE Alu -18 115 2 2039 98 10 24 chr11 59440293 59440590 -91342963 - AluSp SINE Alu -20 293 1 385 229 6 27 chr11 59440620 59440803 -91342750 + CT-rich Low_complexity Low_complexity 1 179 0 1759 126 20 0 chr11 59440810 59441056 -91342497 - AluSx SINE Alu -36 276 26 523 301 179 23 chr11 59441063 59441415 -91342138 - L2 LINE L2 -595 2719 2313 572 107 0 0 chr11 59441416 59441491 -91342062 + AluSg/x SINE Alu 206 280 -30 189 333 69 10 chr11 59441514 59441616 -91341937 - L2 LINE L2 -1734 1580 1473 813 135 71 0 chr11 59441622 59441748 -91341805 + AluSq/x SINE Alu 1 135 -177 2145 121 10 0 chr11 59442365 59442662 -91340891 + AluSx SINE Alu 1 300 -12 2189 102 7 0 chr11 59442711 59443004 -91340549 - AluSg SINE Alu -15 295 1 207 0 0 0 chr11 59443879 59443902 -91339651 + (A)n Simple_repeat Simple_repeat 1 23 0 2219 93 0 10 chr11 59445970 59446271 -91337282 - AluSx SINE Alu -14 298 1 2042 110 24 3 chr11 59446706 59446996 -91336557 + AluSx SINE Alu 1 296 -16 1336 58 103 0 chr11 59447332 59447506 -91336047 - AluSg/x SINE Alu -12 298 107 2009 136 0 10 chr11 59450089 59450383 -91333170 - AluSx SINE Alu -21 291 1 21 0 0 0 chr11 59450828 59450849 -91332704 + AT_rich Low_complexity Low_complexity 1 21 0 184 329 14 0 chr11 59453040 59453110 -91330443 + MIR3 SINE MIR 87 157 -51 2573 63 0 0 chr11 59453421 59453720 -91329833 - AluY SINE Alu -12 299 1 2339 107 0 0 chr11 59453787 59454086 -91329467 - AluSx SINE Alu -13 299 1 183 80 0 0 chr11 59454721 59454746 -91328807 + (ATG)n Simple_repeat Simple_repeat 2 26 0 2323 65 0 4 chr11 59454814 59455090 -91328463 + AluY SINE Alu 27 301 -10 1551 150 94 4 chr11 59455097 59455363 -91328190 + AluJo SINE Alu 1 290 -22 227 350 14 64 chr11 59455420 59455560 -91327993 - MIR3 SINE MIR -70 138 6 2213 112 3 28 chr11 59455640 59455961 -91327592 - AluSq SINE Alu 0 313 1 1936 126 32 3 chr11 59456602 59456887 -91326666 + AluJo SINE Alu 1 293 -19 232 320 0 48 chr11 59459523 59459626 -91323927 - L2 LINE L2 -261 3011 2914 225 302 149 58 chr11 59459945 59460362 -91323191 - L2 LINE L2 -831 2483 2029 1848 129 10 26 chr11 59460472 59460774 -91322779 - AluSg SINE Alu -13 297 1 1580 91 24 5 chr11 59460801 59461010 -91322543 + AluSp SINE Alu 1 213 -100 2122 120 13 3 chr11 59461365 59461665 -91321888 + AluSq SINE Alu 1 303 -10 182 237 85 0 chr11 59461790 59461849 -91321704 - L2 LINE L2 -5 3308 3245 2176 118 13 7 chr11 59461868 59462174 -91321379 + AluSp SINE Alu 1 308 -5 2138 104 24 0 chr11 59462245 59462543 -91321010 + AluSx SINE Alu 1 305 -7 887 187 13 0 chr11 59462628 59462783 -91320770 + FRAM SINE Alu 1 156 -20 2086 129 0 7 chr11 59462820 59463115 -91320438 - AluSx SINE Alu -19 293 1 330 268 8 47 chr11 59463169 59463296 -91320257 - L1ME4a LINE L1 -62 6059 5938 2134 128 0 0 chr11 59463333 59463630 -91319923 - AluSx SINE Alu -15 297 1 1940 154 3 3 chr11 59463790 59464083 -91319470 + AluSx SINE Alu 3 295 -17 225 0 0 0 chr11 59464256 59464281 -91319272 + (T)n Simple_repeat Simple_repeat 1 25 0 1877 275 37 6 chr11 59464464 59465005 -91318548 - L2 LINE L2 -1093 2221 1664 1866 253 69 45 chr11 59465269 59466082 -91317471 - HAL1 LINE L1 0 2507 1676 932 277 0 22 chr11 59466184 59466415 -91317138 + L2 LINE L2 2540 2765 -549 429 313 57 28 chr11 59467563 59467739 -91315814 + MIR SINE MIR 48 228 -34 408 136 30 0 chr11 59467801 59467867 -91315686 - MLT2B1 LTR ERVL 0 520 453 14048 25 1 0 chr11 59467869 59470193 -91313360 - L1PA2 LINE L1 0 6155 3831 190 327 0 0 chr11 59470293 59470345 -91313208 - MIR3 SINE MIR -46 162 111 1301 193 3 77 chr11 59470421 59470541 -91313012 - AluJb SINE Alu -10 302 175 1847 132 38 7 chr11 59470541 59470830 -91312723 - AluSx SINE Alu -13 299 2 1301 193 3 77 chr11 59470830 59471035 -91312518 - AluJb SINE Alu -137 175 1 532 308 137 5 chr11 59471505 59471716 -91311837 + MIR SINE MIR 21 259 -3 242 157 0 0 chr11 59471865 59471916 -91311637 - L1MC4 LINE L1 -1339 6703 6653 12692 127 20 17 chr11 59472486 59473826 -91309727 + L1P3 LINE L1 770 2153 -4308 2387 82 0 7 chr11 59473826 59474131 -91309422 - AluY SINE Alu -8 303 1 12692 127 20 17 chr11 59474131 59475230 -91308323 + L1P3 LINE L1 2153 3247 -3214 398 169 13 0 chr11 59475446 59475523 -91308030 - L1PA16 LINE L1 0 6166 6089 1971 84 4 0 chr11 59475625 59475875 -91307678 + AluY SINE Alu 51 301 -10 1643 118 5 0 chr11 59475878 59476099 -91307454 + AluSx SINE Alu 2 223 -89 228 67 0 0 chr11 59476099 59476129 -91307424 + (TA)n Simple_repeat Simple_repeat 2 31 0 401 267 62 27 chr11 59476130 59476276 -91307277 - MIR SINE MIR -79 183 33 225 309 75 11 chr11 59476656 59476750 -91306803 - MIR SINE MIR -79 183 84 15538 96 25 2 chr11 59476813 59479900 -91303653 - L1PA8 LINE L1 -13 6159 2997 4947 31 0 0 chr11 59480005 59480583 -91302970 - L1P LINE L1 -1002 5144 4567 550 287 117 13 chr11 59480591 59480908 -91302645 + L1MC4a LINE L1 5591 5940 -1868 2014 115 0 17 chr11 59481137 59481450 -91302103 + AluSx SINE Alu 1 308 0 316 288 22 36 chr11 59481453 59481592 -91301961 + L1MC/D LINE L1 1356 1492 -5038 502 277 28 20 chr11 59481600 59481818 -91301735 + L1PBa LINE L1 1484 1923 -841 252 196 101 72 chr11 59482191 59482423 -91301130 + L1MC/D LINE L1 2453 2684 -3856 5035 202 30 72 chr11 59482428 59482696 -91300857 + L1MC/D LINE L1 4519 4797 -1945 198 0 0 0 chr11 59482696 59482718 -91300835 + (CA)n Simple_repeat Simple_repeat 1 22 0 5035 202 30 72 chr11 59482718 59483108 -91300445 + L1MC/D LINE L1 4797 5202 -1540 2469 125 122 8 chr11 59483108 59483492 -91300061 - MSTA LTR MaLR 0 428 1 5035 202 30 72 chr11 59483492 59484008 -91299545 + L1MC/D LINE L1 5202 5738 -1004 2286 83 7 0 chr11 59484008 59484298 -91299255 + AluSg1 SINE Alu 1 292 -17 5035 202 30 72 chr11 59484298 59484419 -91299134 + L1MC/D LINE L1 5738 5863 -879 1436 192 66 19 chr11 59484419 59484719 -91298834 + AluJo SINE Alu 1 313 0 5035 202 30 72 chr11 59484719 59484781 -91298772 + L1MC/D LINE L1 5863 5926 -816 310 120 60 0 chr11 59484781 59484831 -91298722 + MADE1 DNA Mariner 2 54 -26 5035 202 30 72 chr11 59484831 59485016 -91298537 + L1MC/D LINE L1 5926 6059 -683 29112 43 38 2 chr11 59485145 59488752 -91294801 - L1P LINE L1 -2411 3735 1 1376 217 89 60 chr11 59488752 59489090 -91294463 - MLT2B1 LTR ERVL -56 464 108 1883 165 0 10 chr11 59489090 59489399 -91294154 - AluSx SINE Alu -6 306 1 1376 217 89 60 chr11 59489399 59489511 -91294042 - MLT2B1 LTR ERVL -412 108 1 537 263 58 6 chr11 59490164 59490335 -91293218 + MIR SINE MIR 7 186 -76 27 49 0 0 chr11 59490501 59490542 -91293011 + AT_rich Low_complexity Low_complexity 1 41 0 576 295 155 5 chr11 59490636 59490829 -91292724 + MER58A DNA MER1_type 1 222 -2 652 291 91 29 chr11 59490977 59491001 -91292552 + L2 LINE L2 3022 3043 -270 2260 106 7 0 chr11 59491001 59491302 -91292251 - AluSx SINE Alu -9 303 1 652 291 91 29 chr11 59491302 59491552 -91292001 + L2 LINE L2 3043 3313 0 266 0 29 0 chr11 59492016 59492050 -91291503 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 280 164 30 0 chr11 59493699 59493766 -91289787 + (CA)n Simple_repeat Simple_repeat 2 70 0 845 251 128 35 chr11 59493819 59493991 -91289562 - L2 LINE L2 0 3313 3158 2630 95 11 53 chr11 59493991 59494210 -91289343 - THE1B LTR MaLR 0 364 166 2205 117 0 19 chr11 59494210 59494526 -91289027 + AluSx SINE Alu 2 311 -1 2630 95 11 53 chr11 59494526 59494686 -91288867 - THE1B LTR MaLR -198 166 1 845 251 128 35 chr11 59494686 59494912 -91288641 - L2 LINE L2 -155 3158 2878 289 267 63 68 chr11 59494956 59495147 -91288406 + L2 LINE L2 466 655 -2659 319 119 0 34 chr11 59495171 59495230 -91288323 - MER5B DNA MER1_type 0 178 122 2341 96 0 0 chr11 59495232 59495525 -91288028 + AluSg SINE Alu 1 293 -17 1148 137 12 0 chr11 59496043 59496204 -91287349 + AluSx SINE Alu 1 163 -149 518 204 0 0 chr11 59496215 59496318 -91287235 + GA-rich Low_complexity Low_complexity 4 106 0 1769 178 3 0 chr11 59496502 59496795 -91286758 - AluJo SINE Alu -18 294 1 405 283 80 38 chr11 59496797 59497009 -91286544 - L2 LINE L2 -10 3303 3083 322 228 97 44 chr11 59497017 59497131 -91286422 - HAL1 LINE L1 -1575 932 813 891 285 107 37 chr11 59497223 59497682 -91285871 - HAL1 LINE L1 -1815 692 202 371 326 70 0 chr11 59497698 59497827 -91285726 - HAL1 LINE L1 -2366 141 4 507 202 0 0 chr11 59498059 59498173 -91285380 + (TTAGGG)n Simple_repeat Simple_repeat 4 117 0 271 289 88 70 chr11 59498653 59498881 -91284672 + MLT1J LTR MaLR 29 260 -251 279 252 178 37 chr11 59498884 59498991 -91284562 - L2 LINE L2 -5 3308 3187 1937 135 0 3 chr11 59499187 59499469 -91284084 - AluSq SINE Alu -32 281 1 857 277 87 75 chr11 59499477 59499543 -91284010 - ERVL LTR ERVL -1214 4550 4486 1235 174 24 14 chr11 59499543 59499756 -91283797 - MER20 DNA MER1_type -3 216 2 857 277 87 75 chr11 59499756 59500325 -91283228 - ERVL LTR ERVL -1278 4486 3908 2080 178 8 22 chr11 59500331 59500701 -91282852 - MLT1A1 LTR MaLR 0 365 1 26 0 0 0 chr11 59500731 59500757 -91282796 + AT_rich Low_complexity Low_complexity 1 26 0 316 284 45 45 chr11 59500834 59500968 -91282585 - ERVL LTR ERVL -2573 3191 3058 1504 238 153 49 chr11 59501138 59501797 -91281756 + L1MC4 LINE L1 7178 7905 -137 2341 161 21 12 chr11 59501804 59502232 -91281321 + L1MB2 LINE L1 5738 6169 -2 23 0 0 0 chr11 59502232 59502255 -91281298 + AT_rich Low_complexity Low_complexity 1 23 0 289 234 16 81 chr11 59502293 59502417 -91281136 + L1MC4 LINE L1 7898 8013 -29 903 228 80 36 chr11 59502732 59502957 -91280596 + MLT1E2 LTR MaLR 7 239 -273 180 120 0 0 chr11 59503532 59503557 -91279996 - L3 LINE CR1 -38 1539 1515 437 346 26 52 chr11 59503569 59503875 -91279678 + MLT1K LTR MaLR 129 426 -162 920 142 0 15 chr11 59504408 59504542 -91279011 - FLAM_C SINE Alu 0 133 2 278 130 87 0 chr11 59504803 59504849 -91278704 - L2 LINE L2 0 3313 3264 297 280 13 0 chr11 59505206 59505281 -91278272 - MIR SINE MIR -25 237 162 2084 110 0 83 chr11 59506174 59506510 -91277043 - AluSq SINE Alu -5 308 1 2318 91 10 3 chr11 59507709 59508018 -91275535 + AluSq SINE Alu 3 313 0 708 317 57 10 chr11 59508266 59508566 -91274987 + HAL1 LINE L1 9 322 -2185 968 161 0 78 chr11 59508567 59508760 -91274793 - AluJo SINE Alu -134 178 1 2224 226 101 44 chr11 59508760 59509598 -91273955 + HAL1 LINE L1 995 1880 -627 230 0 0 32 chr11 59510085 59510116 -91273437 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 30540 117 19 57 chr11 59510119 59516513 -91267040 - L1PA3 LINE L1 0 6155 12 1962 163 18 69 chr11 59516521 59516573 -91266980 - L1MB3 LINE L1 -40 6143 6090 681 169 34 0 chr11 59516573 59516691 -91266862 + FLAM_A SINE Alu 1 122 -11 1962 163 18 69 chr11 59516691 59516977 -91266576 - L1MB3 LINE L1 -93 6090 5831 2025 129 3 26 chr11 59516977 59517288 -91266265 - AluSq SINE Alu -9 304 1 1962 163 18 69 chr11 59517288 59517396 -91266157 - L1MB3 LINE L1 -352 5831 5719 892 285 172 22 chr11 59517813 59518436 -91265117 + L2 LINE L2 2394 3161 -152 2224 122 3 3 chr11 59518436 59518748 -91264805 - AluSq SINE Alu -1 312 1 892 285 172 22 chr11 59518748 59518928 -91264625 + L2 LINE L2 3161 3313 0 910 109 8 0 chr11 59519021 59519140 -91264413 + FLAM_C SINE Alu 1 120 -23 27 0 0 0 chr11 59519497 59519524 -91264029 + AT_rich Low_complexity Low_complexity 1 27 0 785 152 0 43 chr11 59519713 59519851 -91263702 - FLAM_C SINE Alu 0 133 2 2280 103 10 0 chr11 59519995 59520296 -91263257 - AluSx SINE Alu -8 304 1 7246 50 3 1 chr11 59520418 59521485 -91262068 + L1PA7 LINE L1 5083 6151 -3 340 121 0 35 chr11 59521514 59521572 -91261981 + L1PB3 LINE L1 6097 6152 -2 2107 115 34 3 chr11 59521594 59521889 -91261664 + AluSg SINE Alu 1 304 -6 461 253 0 0 chr11 59521890 59521985 -91261568 + AluJo SINE Alu 126 220 -92 1806 163 10 7 chr11 59522318 59522613 -91260940 + AluSq SINE Alu 3 298 -15 724 175 0 0 chr11 59523443 59523563 -91259990 + FLAM_C SINE Alu 1 120 -13 369 278 96 0 chr11 59524128 59524243 -91259310 - LTR37B LTR ERV1 -342 126 1 10392 52 11 85 chr11 59524360 59525849 -91257704 + SVA Other Other 7 1386 0 269 309 0 0 chr11 59528683 59528767 -91254786 - MIR SINE MIR -91 171 88 527 289 123 17 chr11 59529280 59529515 -91254038 - MIR SINE MIR -2 260 1 394 226 22 80 chr11 59529645 59529691 -91253862 - MLT1H LTR MaLR -4 545 498 593 212 8 15 chr11 59529691 59529823 -91253730 - L1PB4 LINE L1 -1 6155 6025 394 226 22 80 chr11 59529823 59529913 -91253640 - MLT1H LTR MaLR -51 498 417 515 156 0 0 chr11 59530159 59530249 -91253304 + L1MA7 LINE L1 6200 6289 -2 973 253 108 12 chr11 59530262 59530689 -91252864 + L1ME3 LINE L1 4190 4657 -1489 398 221 68 47 chr11 59530676 59530843 -91252710 + L1ME3 LINE L1 5129 5302 -844 * 2537 87 0 0 chr11 59530843 59531155 -91252398 + AluSx SINE Alu 1 312 0 398 221 68 47 chr11 59531155 59531177 -91252376 + L1ME3 LINE L1 5302 5322 -824 304 290 21 75 chr11 59531190 59531376 -91252177 + LTR16C LTR ERVL 316 491 0 1044 197 38 130 chr11 59531934 59532039 -91251514 + L1ME3 LINE L1 5289 5402 -760 3697 121 11 9 chr11 59532039 59532594 -91250959 + L1PA14 LINE L1 5603 6158 -3 1044 197 38 130 chr11 59532594 59532775 -91250778 + L1ME3 LINE L1 5402 5598 -564 2065 136 14 0 chr11 59532775 59533070 -91250483 + AluSx SINE Alu 3 301 -11 1044 197 38 130 chr11 59533070 59533424 -91250129 + L1ME3 LINE L1 5598 5844 -318 342 286 14 84 chr11 59535583 59535785 -91247768 + MIR SINE MIR 20 205 -57 723 233 78 22 chr11 59536487 59536719 -91246834 - MIR SINE MIR 0 262 18 291 242 204 38 chr11 59537528 59537628 -91245925 - MER5A DNA MER1_type -8 181 53 2584 61 0 6 chr11 59537628 59537941 -91245612 - AluY SINE Alu 0 311 1 291 242 204 38 chr11 59537941 59537972 -91245581 - MER5A DNA MER1_type -136 53 28 432 178 0 44 chr11 59537987 59538077 -91245476 + L1MC4a LINE L1 5839 5924 -1884 2907 184 15 12 chr11 59538796 59539333 -91244220 + MER44D DNA MER2_type 12 602 -3 2768 141 14 7 chr11 59539370 59539795 -91243758 - MSTC LTR MaLR 0 428 1 193 294 0 0 chr11 59539998 59540049 -91243504 + L2 LINE L2 3210 3260 -12 741 126 0 0 chr11 59540809 59540912 -91242641 + U6 snRNA snRNA 1 103 -4 2281 126 0 0 chr11 59540913 59541222 -91242331 - AluSx SINE Alu -3 309 1 233 120 120 0 chr11 59541236 59541286 -91242267 + L1PA16 LINE L1 6111 6166 0 247 277 24 36 chr11 59541819 59541902 -91241651 + MIR SINE MIR 2 83 -179 2115 70 3 89 chr11 59542123 59542438 -91241115 + AluSc SINE Alu 1 288 -21 322 316 29 7 chr11 59543470 59543609 -91239944 + MIR SINE MIR 17 158 -104 624 284 162 9 chr11 59543656 59543876 -91239677 + L2 LINE L2 2928 3113 -200 231 36 0 0 chr11 59543876 59543904 -91239649 + (CA)n Simple_repeat Simple_repeat 1 28 0 624 284 162 9 chr11 59543904 59544017 -91239536 + L2 LINE L2 3113 3312 -1 280 175 0 18 chr11 59544448 59544505 -91239048 - MIR SINE MIR -179 83 28 202 309 29 0 chr11 59545155 59545223 -91238330 + MIR SINE MIR 73 142 -120 2201 106 9 37 chr11 59545266 59545587 -91237966 + AluSx SINE Alu 1 312 0 196 303 192 0 chr11 59546408 59546507 -91237046 - L2 LINE L2 -11 3261 3144 2491 114 23 106 chr11 59546952 59547425 -91236128 - MER57B LTR ERV1 0 434 1 33 0 0 0 chr11 59547704 59547737 -91235816 + AT_rich Low_complexity Low_complexity 1 33 0 226 159 23 0 chr11 59548644 59548688 -91234865 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 367 284 99 27 chr11 59548905 59549113 -91234440 - L1ME3A LINE L1 -304 5866 5616 1033 167 44 0 chr11 59549113 59549293 -91234260 + MER5A DNA MER1_type 2 189 0 367 284 99 27 chr11 59549293 59549409 -91234144 - L1ME3A LINE L1 -554 5616 5510 337 291 104 53 chr11 59549953 59550911 -91232642 - L1ME3A LINE L1 -2848 3298 2292 2721 134 34 5 chr11 59550959 59551405 -91232148 - L1PA16 LINE L1 -9 6157 5699 1795 141 28 11 chr11 59551473 59551757 -91231796 - AluSx SINE Alu -23 289 1 319 161 0 0 chr11 59552126 59552182 -91231371 + L1MC2 LINE L1 5191 5246 -900 231 189 0 0 chr11 59552184 59552221 -91231332 + AluJ SINE Alu 1 37 -262 184 0 62 31 chr11 59552221 59552253 -91231300 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 3518 34 30 11 chr11 59552277 59552289 -91231264 + L1PA4 LINE L1 5599 5609 -558 2919 136 0 2 chr11 59552289 59552722 -91230831 - L1PA15 LINE L1 0 6165 5734 3518 34 30 11 chr11 59552722 59553294 -91230259 + L1PA4 LINE L1 5609 6167 0 560 157 126 3 chr11 59553294 59553484 -91230069 + AluJ SINE Alu 24 287 -25 2289 102 7 0 chr11 59553485 59553788 -91229765 + AluSx SINE Alu 1 305 -7 2794 150 91 61 chr11 59553795 59554165 -91229388 + L1MC2 LINE L1 5240 5637 -707 2312 122 120 5 chr11 59554165 59554549 -91229004 - MSTA LTR MaLR 0 428 1 2794 150 91 61 chr11 59554549 59554833 -91228720 + L1MC2 LINE L1 5637 5911 -433 874 230 101 17 chr11 59554832 59555180 -91228373 + L1ME4a LINE L1 5558 5934 -187 * 1426 149 18 9 chr11 59555389 59555610 -91227943 - AluJb SINE Alu -89 223 1 1966 138 21 14 chr11 59555720 59556022 -91227531 - AluSx SINE Alu 0 304 1 1944 140 0 0 chr11 59557087 59557359 -91226194 - AluJo SINE Alu -20 292 21 1954 216 157 17 chr11 59558536 59559243 -91224310 - L1MC5 LINE L1 -51 7910 7105 278 279 89 25 chr11 59559275 59559433 -91224120 + L2 LINE L2 2916 3083 -189 5320 117 117 70 chr11 59559558 59559802 -91223751 + Tigger3b DNA MER2_type 88 319 -2709 1849 136 3 30 chr11 59559802 59560104 -91223449 + AluJo SINE Alu 2 295 -17 5320 117 117 70 chr11 59560104 59560328 -91223225 + Tigger3b DNA MER2_type 319 531 -2497 1456 158 49 8 chr11 59560328 59560575 -91222978 - AluJo SINE Alu -30 282 26 5320 117 117 70 chr11 59560575 59561195 -91222358 + Tigger3b DNA MER2_type 531 1229 -2 2052 108 59 0 chr11 59562112 59562398 -91221155 + AluSx SINE Alu 1 303 -9 2104 118 44 0 chr11 59563603 59563900 -91219653 + AluSx SINE Alu 1 310 -2 535 323 72 39 chr11 59563935 59564269 -91219284 + L2 LINE L2 2073 2417 -897 1265 177 0 5 chr11 59564300 59564515 -91219038 - AluY SINE Alu -11 300 87 206 236 351 14 chr11 59564670 59564770 -91218783 + MIR SINE MIR 65 130 -132 1861 138 8 4 chr11 59564770 59565038 -91218515 + AluSx SINE Alu 1 269 -43 206 236 351 14 chr11 59565038 59565085 -91218468 + MIR SINE MIR 130 262 0 201 170 113 0 chr11 59565105 59565158 -91218395 + MIR SINE MIR 158 216 -46 215 255 204 0 chr11 59565233 59565331 -91218222 + L2 LINE L2 2579 2696 -618 196 329 14 29 chr11 59565397 59565467 -91218086 + L2 LINE L2 3191 3259 -13 699 214 148 6 chr11 59565971 59566153 -91217400 - MIR SINE MIR -28 234 27 2263 92 3 0 chr11 59566253 59566546 -91217007 + AluSx SINE Alu 1 294 -18 2368 60 0 0 chr11 59566962 59567243 -91216310 - AluY SINE Alu -8 303 23 401 92 215 0 chr11 59567635 59567700 -91215853 + MADE1 DNA Mariner 1 79 -1 657 257 204 8 chr11 59567901 59568497 -91215056 - L1MEd LINE L1 -4640 1670 915 808 318 142 34 chr11 59568539 59569277 -91214276 - L1MEd LINE L1 -5295 824 7 2312 105 3 0 chr11 59569401 59569705 -91213848 + AluSp SINE Alu 1 305 -8 2285 110 0 13 chr11 59570781 59571098 -91212455 + AluSq SINE Alu 1 313 0 260 325 83 17 chr11 59571099 59571219 -91212334 + MER5A DNA MER1_type 40 167 -22 2074 104 46 0 chr11 59571410 59571690 -91211863 + AluSx SINE Alu 1 293 -19 338 91 0 0 chr11 59571842 59571886 -91211667 + 5S rRNA rRNA 1 44 -77 313 336 52 9 chr11 59571913 59572029 -91211524 + L2 LINE L2 3192 3312 -1 182 211 58 0 chr11 59572799 59572851 -91210702 + MIR SINE MIR 95 149 -113 1607 155 159 0 chr11 59576311 59576563 -91206990 + AluSx SINE Alu 1 292 -10 990 187 0 0 chr11 59577351 59577506 -91206047 - AluJo SINE Alu -157 155 1 3132 185 85 40 chr11 59577546 59578208 -91205345 - Charlie1 DNA MER1_type -1 2760 1995 1836 163 25 3 chr11 59578208 59578490 -91205063 - AluJb SINE Alu -24 288 1 3132 185 85 40 chr11 59578490 59578735 -91204818 - Charlie1 DNA MER1_type -766 1995 1762 719 115 39 46 chr11 59578735 59578865 -91204688 + FLAM_C SINE Alu 12 140 -3 1062 211 143 23 chr11 59578865 59579003 -91204550 - Charlie1 DNA MER1_type -991 1770 1650 2392 84 0 3 chr11 59579003 59579301 -91204252 - AluSx SINE Alu -15 297 1 1062 211 143 23 chr11 59579301 59579470 -91204083 - Charlie1 DNA MER1_type -1111 1650 1426 1827 160 3 10 chr11 59580564 59580870 -91202683 - AluJb SINE Alu -8 304 1 2069 128 17 3 chr11 59580918 59581214 -91202339 + AluSx SINE Alu 1 300 -12 2034 116 24 3 chr11 59581532 59581825 -91201728 + AluSx SINE Alu 1 299 -13 28 71 0 0 chr11 59582558 59582614 -91200939 + AT_rich Low_complexity Low_complexity 1 56 0 458 251 134 17 chr11 59582617 59582796 -91200757 + MIR SINE MIR 63 262 0 191 349 48 0 chr11 59582921 59582984 -91200569 - L2 LINE L2 -8 3264 3199 2519 87 0 0 chr11 59583906 59584218 -91199335 - AluSx SINE Alu 0 312 1 304 88 35 0 chr11 59585283 59585340 -91198213 + (CCA)n Simple_repeat Simple_repeat 3 61 0 2034 104 17 0 chr11 59585995 59586282 -91197271 + AluSx SINE Alu 1 292 -20 810 305 83 3 chr11 59586409 59586711 -91196842 - MER110 LTR ERV1 0 491 166 1343 204 168 3 chr11 59587157 59587496 -91196057 + MSTD LTR MaLR 1 395 -1 294 315 98 7 chr11 59587597 59587740 -91195813 + MIR3 SINE MIR 38 193 -15 2266 108 7 0 chr11 59587800 59588097 -91195456 + AluSx SINE Alu 2 300 -12 793 261 28 52 chr11 59588790 59589136 -91194417 - MLT1I LTR MaLR -5 441 63 761 270 86 33 chr11 59589649 59590045 -91193508 + L1ME4a LINE L1 5693 6109 -12 315 0 0 0 chr11 59590146 59590181 -91193372 + (TG)n Simple_repeat Simple_repeat 2 36 0 506 318 96 49 chr11 59591065 59591420 -91192133 + L2 LINE L2 2382 2768 -546 2200 104 7 0 chr11 59591420 59591709 -91191844 - AluSx SINE Alu -21 291 1 506 318 96 49 chr11 59591709 59591843 -91191710 + L2 LINE L2 2768 2894 -420 * 729 251 40 11 chr11 59591745 59591920 -91191633 + MIR SINE MIR 15 194 -68 268 239 45 15 chr11 59591936 59592003 -91191550 - L2 LINE L2 -30 3283 3215 1869 167 0 3 chr11 59592003 59592303 -91191250 + AluSx SINE Alu 1 299 -13 257 200 0 20 chr11 59592311 59592361 -91191192 + MIR SINE MIR 204 252 -10 548 276 47 104 chr11 59592496 59592793 -91190760 + L2 LINE L2 2993 3272 0 214 328 200 25 chr11 59592800 59593161 -91190392 + L2 LINE L2 2239 3312 -1 201 309 15 0 chr11 59593228 59593296 -91190257 + L2 LINE L2 2695 2763 -551 2984 149 28 2 chr11 59594934 59595404 -91188149 + L1PA16 LINE L1 5684 6165 -1 5158 130 42 30 chr11 59595602 59596410 -91187143 - L1MA4A LINE L1 -1 6302 5480 2067 138 0 0 chr11 59596410 59596699 -91186854 + AluSx SINE Alu 1 289 -23 5158 130 42 30 chr11 59596699 59596785 -91186768 - L1MA4A LINE L1 -823 5480 5397 4450 70 34 26 chr11 59596780 59597165 -91186388 + L1PB1 LINE L1 5391 5784 -367 * 360 0 0 0 chr11 59597165 59597205 -91186348 + (CA)n Simple_repeat Simple_repeat 2 41 0 4450 70 34 26 chr11 59597205 59597445 -91186108 + L1PB1 LINE L1 5784 6021 -130 4816 145 136 141 chr11 59597450 59597790 -91185763 - L1MA4A LINE L1 -1397 4749 4409 1550 180 8 4 chr11 59597790 59598045 -91185508 - AluJo SINE Alu -56 256 1 4816 145 136 141 chr11 59598045 59598524 -91185029 - L1MA4A LINE L1 -1737 4409 3929 776 161 0 8 chr11 59598524 59598642 -91184911 + FLAM_C SINE Alu 2 118 -25 4816 145 136 141 chr11 59598642 59598696 -91184857 - L1MA4A LINE L1 -2217 3929 3876 1996 117 29 0 chr11 59598696 59598994 -91184559 + AluSg SINE Alu 3 308 0 4816 145 136 141 chr11 59598994 59599197 -91184356 - L1MA4A LINE L1 -2270 3876 3674 1492 194 10 20 chr11 59599197 59599496 -91184057 - AluJb SINE Alu -16 296 1 4816 145 136 141 chr11 59599496 59599803 -91183750 - L1MA4A LINE L1 -2472 3674 3367 1734 52 0 9 chr11 59599803 59600013 -91183540 - L1PA5 LINE L1 0 6154 5947 4816 145 136 141 chr11 59600013 59600274 -91183279 - L1MA4A LINE L1 -2779 3367 2991 * 6950 142 11 1 chr11 59600271 59601399 -91182154 - L1 LINE L1 -1191 5657 4519 5136 216 79 73 chr11 59601395 59602893 -91180660 - L1 LINE L1 -5336 1513 8 * 1557 225 60 58 chr11 59603045 59603328 -91180225 - MLT1C LTR MaLR 0 467 181 2096 123 10 0 chr11 59603328 59603620 -91179933 - AluSx SINE Alu -17 295 1 1557 225 60 58 chr11 59603620 59603802 -91179751 - MLT1C LTR MaLR -286 181 1 2253 112 3 3 chr11 59604065 59604377 -91179176 - AluSx SINE Alu 0 312 1 793 211 196 5 chr11 59605721 59605915 -91177638 - MIR SINE MIR -30 232 2 1774 155 72 25 chr11 59606016 59606382 -91177171 - LTR22B LTR ERVK -120 460 1 258 340 93 6 chr11 59606460 59606622 -91176931 + MIR SINE MIR 81 256 -6 1993 185 9 3 chr11 59606707 59607042 -91176511 - THE1B LTR MaLR 0 364 28 2112 113 0 3 chr11 59607043 59607356 -91176197 + AluSx SINE Alu 1 312 0 555 204 172 23 chr11 59607361 59607582 -91175971 - MER113 DNA MER1_type? -83 438 185 226 263 10 71 chr11 59607715 59607814 -91175739 - MIR SINE MIR -46 216 124 2089 170 7 58 chr11 59607984 59608395 -91175158 + MLT1B LTR MaLR 1 390 0 619 260 115 48 chr11 59608396 59608523 -91175030 - MLT1J LTR MaLR -176 335 218 1448 190 74 68 chr11 59608523 59608917 -91174636 + MSTD LTR MaLR 1 396 0 619 260 115 48 chr11 59608917 59609101 -91174452 - MLT1J LTR MaLR -293 218 3 5261 86 0 24 chr11 59609201 59609350 -91174203 + LTR8 LTR ERV1 1 152 -539 2026 134 3 13 chr11 59609350 59609655 -91173898 - AluSx SINE Alu -10 302 1 5261 86 0 24 chr11 59609655 59610213 -91173340 + LTR8 LTR ERV1 152 691 0 277 179 134 0 chr11 59610264 59610331 -91173222 - MLT1A1 LTR MaLR 0 365 290 1210 113 0 0 chr11 59610360 59610519 -91173034 - AluSq SINE Alu -154 159 1 1601 108 0 150 chr11 59610519 59610879 -91172674 - MLT1A1 LTR MaLR -59 306 1 4116 102 0 4 chr11 59611195 59611751 -91171802 + MER41A LTR ERV1 1 554 0 1398 89 64 0 chr11 59611836 59612038 -91171515 + MER41A-int LTR ERV1 1 215 -7541 4338 117 7 0 chr11 59612040 59612637 -91170916 + L1PA7 LINE L1 1 601 -5860 8992 87 10 0 chr11 59612639 59614640 -91168913 + L1PA7 LINE L1 4451 6469 0 4299 144 74 20 chr11 59614644 59615714 -91167839 + MER41A-int LTR ERV1 205 1575 -4371 2092 137 3 0 chr11 59615714 59616007 -91167546 - AluSx SINE Alu -14 298 5 4299 144 74 20 chr11 59616007 59616476 -91167077 + MER41A-int LTR ERV1 1575 2017 -3929 291 130 19 19 chr11 59616472 59616526 -91167027 + MER41A-int LTR ERV1 2167 2220 -3726 * 5771 116 56 55 chr11 59616522 59617893 -91165660 + MER41A-int LTR ERV1 2184 3279 -1736 1802 84 12 12 chr11 59617913 59618163 -91165390 + MER41A LTR ERV1 305 554 0 1761 170 24 0 chr11 59618208 59618496 -91165057 - AluJb SINE Alu -17 295 1 3703 157 36 66 chr11 59619179 59619963 -91163590 + MER4D LTR ERV1 1 760 -143 189 217 0 43 chr11 59619977 59620023 -91163530 + L2 LINE L2 3210 3253 -19 1084 158 27 0 chr11 59621214 59621398 -91162155 - MER20 DNA MER1_type 0 219 31 1481 141 49 58 chr11 59621692 59622019 -91161534 - MER33 DNA MER1_type 0 324 1 1640 154 6 49 chr11 59622680 59623004 -91160549 - AluJb SINE Alu -2 310 1 195 204 0 56 chr11 59623153 59623207 -91160346 + L2 LINE L2 3214 3264 -8 237 304 51 64 chr11 59623374 59623687 -91159866 - L1MEd LINE L1 -5800 319 11 233 336 29 27 chr11 59623731 59623970 -91159583 + L2 LINE L2 2742 2980 -292 1868 130 75 39 chr11 59624106 59624468 -91159085 - THE1C LTR MaLR 0 375 1 1579 252 94 35 chr11 59624595 59624866 -91158687 + MER69 DNA AcHobo 2 256 -2270 1621 140 4 0 chr11 59624866 59625109 -91158444 + AluSx SINE Alu 54 297 -15 1579 252 94 35 chr11 59625109 59625380 -91158173 + MER69 DNA AcHobo 256 576 -1950 641 224 119 19 chr11 59625373 59625583 -91157970 + MER69 DNA AcHobo 2296 2526 0 * 2551 200 85 25 chr11 59625834 59626219 -91157334 - MLT1F1 LTR MaLR 0 567 140 2630 155 24 28 chr11 59626219 59626684 -91156869 + MLT1C LTR MaLR 5 467 0 2551 200 85 25 chr11 59626684 59626829 -91156724 - MLT1F1 LTR MaLR -427 140 5 198 0 0 0 chr11 59626925 59626947 -91156606 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2085 135 10 0 chr11 59626976 59627279 -91156274 + AluSx SINE Alu 1 306 -6 1976 156 0 28 chr11 59627294 59627615 -91155938 + AluSx SINE Alu 1 312 0 2458 198 12 4 chr11 59627620 59628116 -91155437 + L1MA6 LINE L1 2263 2762 -3384 1828 178 0 20 chr11 59628116 59628285 -91155268 + AluJb SINE Alu 1 163 -149 1584 142 206 14 chr11 59628285 59628644 -91154909 + MSTA LTR MaLR 1 428 0 1828 178 0 20 chr11 59628644 59628777 -91154776 + AluJb SINE Alu 163 297 -15 12800 150 36 41 chr11 59628777 59629355 -91154198 + L1MA6 LINE L1 2758 3337 -2963 2174 122 54 25 chr11 59629355 59629709 -91153844 - THE1B LTR MaLR 0 364 1 12800 150 36 41 chr11 59629709 59631015 -91152538 + L1MA6 LINE L1 3337 4648 -1652 1847 150 0 29 chr11 59631015 59631295 -91152258 - AluSx SINE Alu -40 272 1 12800 150 36 41 chr11 59631295 59631978 -91151575 + L1MA6 LINE L1 4648 5298 -1002 225 0 0 0 chr11 59631978 59632003 -91151550 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 12800 150 36 41 chr11 59632003 59632493 -91151060 + L1MA6 LINE L1 5298 5789 -511 241 200 0 0 chr11 59632483 59632538 -91151015 - L1MC4 LINE L1 -1336 6706 6652 * 338 264 23 0 chr11 59632561 59632648 -91150905 - L1MC4 LINE L1 -1340 6702 6614 2453 149 95 2 chr11 59632654 59633117 -91150436 + L1MA6 LINE L1 5783 6288 -12 1774 150 0 67 chr11 59633117 59633431 -91150122 - AluJb SINE Alu -19 293 1 2093 120 17 3 chr11 59633592 59633883 -91149670 - AluSg SINE Alu -15 295 1 233 232 116 0 chr11 59633983 59634078 -91149475 - L2 LINE L2 0 3313 3208 205 336 35 0 chr11 59634635 59634748 -91148805 + MIR3 SINE MIR 74 190 -18 1953 134 22 0 chr11 59634962 59635085 -91148468 + AluSx SINE Alu 2 121 -183 225 0 0 0 chr11 59635085 59635110 -91148443 + (TA)n Simple_repeat Simple_repeat 1 25 0 1953 134 22 0 chr11 59635110 59635283 -91148270 + AluSx SINE Alu 121 304 0 334 371 18 12 chr11 59635453 59635623 -91147930 + L3 LINE CR1 1406 1576 -1 2205 116 3 0 chr11 59635698 59635990 -91147563 - AluSq SINE Alu -20 293 1 224 171 23 163 chr11 59636250 59636337 -91147216 - L2 LINE L2 0 3313 3248 2268 129 0 0 chr11 59636337 59636647 -91146906 + AluSx SINE Alu 1 310 -2 224 171 23 163 chr11 59636647 59636688 -91146865 - L2 LINE L2 -65 3248 3203 532 290 18 43 chr11 59637738 59637970 -91145583 - MIR SINE MIR -4 258 34 2036 106 44 75 chr11 59638036 59638263 -91145290 - THE1C LTR MaLR 0 375 163 1882 144 47 0 chr11 59638263 59638541 -91145012 + AluSx SINE Alu 1 291 -21 2036 106 44 75 chr11 59638541 59638700 -91144853 - THE1C LTR MaLR -212 163 1 2468 71 3 0 chr11 59639413 59639708 -91143845 - AluY SINE Alu -15 296 1 1856 159 0 7 chr11 59639792 59640081 -91143472 + AluJb SINE Alu 11 297 -15 216 345 151 0 chr11 59641349 59641468 -91142085 + L2 LINE L2 3177 3313 0 1998 135 6 26 chr11 59641574 59641886 -91141667 - AluSx SINE Alu -6 306 1 233 275 29 0 chr11 59642112 59642181 -91141372 + MLT1J LTR MaLR 110 180 -331 226 236 56 0 chr11 59642237 59642309 -91141244 + MLT1L LTR MaLR 518 593 -22 2239 107 10 0 chr11 59643122 59643420 -91140133 + AluSx SINE Alu 2 302 -10 1252 0 481 0 chr11 59643728 59643950 -91139603 - L1MB4 LINE L1 -21 6157 6119 2180 129 117 8 chr11 59643950 59644159 -91139394 - MSTA LTR MaLR 0 428 243 2296 101 17 0 chr11 59644159 59644457 -91139096 - AluSx SINE Alu -9 303 1 2180 129 117 8 chr11 59644457 59644633 -91138920 - MSTA LTR MaLR -185 243 1 1252 0 481 0 chr11 59644633 59644718 -91138835 - L1MB4 LINE L1 -59 6119 5840 754 154 0 0 chr11 59644810 59644927 -91138626 + FLAM_C SINE Alu 2 118 -25 461 176 155 42 chr11 59645018 59645211 -91138342 + MIR SINE MIR 48 262 0 677 202 51 119 chr11 59645249 59645561 -91137992 + LTR37B LTR ERV1 1 291 -177 2247 125 0 0 chr11 59645722 59646017 -91137536 + AluSx SINE Alu 1 295 -17 2076 138 3 0 chr11 59646028 59646318 -91137235 + AluSx SINE Alu 3 293 -19 739 167 0 24 chr11 59646329 59646455 -91137098 + FLAM_A SINE Alu 1 123 -10 344 327 26 9 chr11 59646705 59646818 -91136735 + MIR SINE MIR 31 145 -63 248 171 0 0 chr11 59646824 59646859 -91136694 + Alu SINE Alu 2 36 -266 1983 153 0 7 chr11 59646897 59647204 -91136349 - AluSx SINE Alu -7 305 1 516 219 62 39 chr11 59647302 59647480 -91136073 - L1MC5 LINE L1 -36 7925 7744 234 0 0 0 chr11 59647514 59647540 -91136013 + (T)n Simple_repeat Simple_repeat 1 26 0 2225 107 3 25 chr11 59647975 59648293 -91135260 - AluSp SINE Alu -1 312 2 23 33 0 0 chr11 59648296 59648326 -91135227 + AT_rich Low_complexity Low_complexity 1 30 0 180 111 0 0 chr11 59648527 59648554 -91134999 + (CCCTAG)n Simple_repeat Simple_repeat 4 30 0 714 165 8 24 chr11 59648823 59648950 -91134603 + FLAM_C SINE Alu 1 125 -8 230 105 0 0 chr11 59649723 59649761 -91133792 - MIR SINE MIR -135 127 90 2276 103 7 0 chr11 59650844 59651134 -91132419 + AluSx SINE Alu 1 292 -20 1030 268 12 56 chr11 59651623 59651847 -91131706 + Charlie2 DNA MER1_type 6 211 -2571 2351 108 0 6 chr11 59651847 59652161 -91131392 - AluSx SINE Alu 0 312 1 1030 268 12 56 chr11 59652161 59652276 -91131277 + Charlie2 DNA MER1_type 211 330 -2452 2611 142 26 5 chr11 59652858 59653273 -91130280 + MSTB LTR MaLR 1 424 -2 8807 166 40 19 chr11 59653273 59653624 -91129929 + MSTB-int LTR MaLR 1 343 -1308 1967 151 3 3 chr11 59653624 59653922 -91129631 + AluJo SINE Alu 1 298 -14 8807 166 40 19 chr11 59653922 59655188 -91128365 + MSTB-int LTR MaLR 343 1651 0 2232 159 68 5 chr11 59655188 59655585 -91127968 + MSTB LTR MaLR 1 422 -4 206 342 40 27 chr11 59656803 59656952 -91126601 - MIR SINE MIR -65 197 47 307 277 79 35 chr11 59657593 59657795 -91125758 + L1ME LINE L1 5644 5854 -267 2229 100 4 0 chr11 59657944 59658245 -91125308 - AluSq SINE Alu 0 302 1 3297 146 20 67 chr11 59658279 59658722 -91124831 - MER50 LTR ERV1 -23 711 249 2538 66 0 0 chr11 59658722 59659027 -91124526 + AluY SINE Alu 1 305 -6 3297 146 20 67 chr11 59659027 59659164 -91124389 - MER50 LTR ERV1 -485 249 107 208 0 0 0 chr11 59659164 59659187 -91124366 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2073 135 0 0 chr11 59659187 59659468 -91124085 - AluSx SINE Alu -1 303 1 3297 146 20 67 chr11 59659468 59659615 -91123938 - MER50 LTR ERV1 -625 109 24 185 65 32 0 chr11 59659615 59659646 -91123907 + (CCTA)n Simple_repeat Simple_repeat 4 35 0 566 299 143 33 chr11 59659930 59660321 -91123232 - MLT1J2 LTR MaLR -2 448 15 419 296 0 0 chr11 59660935 59661023 -91122530 + L2 LINE L2 3226 3313 0 589 227 104 7 chr11 59661047 59661140 -91122413 + MER5A DNA MER1_type 21 104 -85 2235 90 0 32 chr11 59661140 59661450 -91122103 + AluSx SINE Alu 1 300 -12 589 227 104 7 chr11 59661450 59661510 -91122043 + MER5A DNA MER1_type 104 189 0 209 309 36 0 chr11 59661540 59661595 -91121958 - L2 LINE L2 -75 3197 3141 * 210 241 19 0 chr11 59661589 59661643 -91121910 - L2 LINE L2 -300 2972 2918 4107 91 18 2 chr11 59662025 59662583 -91120970 - L1MA5A LINE L1 -4 6293 5727 861 262 52 52 chr11 59662656 59662893 -91120660 + L1ME3A LINE L1 5540 5779 -391 2345 86 3 7 chr11 59662893 59663196 -91120357 + AluSq SINE Alu 1 302 -11 861 262 52 52 chr11 59663196 59663381 -91120172 + L1ME3A LINE L1 5778 5962 -208 403 296 0 0 chr11 59663519 59663617 -91119936 + MER5A DNA MER1_type 9 106 -83 26 0 0 0 chr11 59663766 59663792 -91119761 + AT_rich Low_complexity Low_complexity 1 26 0 957 85 0 0 chr11 59663794 59663912 -91119641 + AluJb SINE Alu 1 118 -194 30 83 0 0 chr11 59663912 59663984 -91119569 + AT_rich Low_complexity Low_complexity 1 72 0 2207 106 0 10 chr11 59664244 59664555 -91118998 + AluSx SINE Alu 1 308 -4 2026 118 0 14 chr11 59664784 59665096 -91118457 - AluSq SINE Alu 0 308 1 2015 94 0 19 chr11 59665505 59665807 -91117746 - AluSc SINE Alu 0 314 18 2365 84 0 13 chr11 59666251 59666560 -91116993 + AluSc SINE Alu 1 305 -4 1225 296 110 11 chr11 59667076 59667538 -91116015 - Tigger8 DNA MER2_type -133 533 26 23 33 0 0 chr11 59667596 59667626 -91115927 + AT_rich Low_complexity Low_complexity 1 30 0 4690 175 16 29 chr11 59667626 59667694 -91115859 - L1MB8 LINE L1 -1 6988 6921 2027 88 4 0 chr11 59667694 59667955 -91115598 + AluSq SINE Alu 43 304 -9 4690 175 16 29 chr11 59667955 59668904 -91114649 - L1MB8 LINE L1 -68 6921 5984 40254 72 7 6 chr11 59668925 59675059 -91108494 - L1PA6 LINE L1 -2 6152 11 2630 206 21 36 chr11 59675074 59675113 -91108440 - L1MB8 LINE L1 -986 5971 5933 1897 175 29 50 chr11 59675113 59675495 -91108058 + MLT1A2 LTR MaLR 1 374 0 2630 206 21 36 chr11 59675495 59675765 -91107788 - L1MB8 LINE L1 -1024 5933 5660 2176 138 0 0 chr11 59675765 59676076 -91107477 + AluSx SINE Alu 1 311 -1 2630 206 21 36 chr11 59676076 59676396 -91107157 - L1MB8 LINE L1 -1297 5660 5351 1597 107 8 37 chr11 59676397 59676640 -91106913 + AluSx SINE Alu 1 236 -76 5197 214 66 40 chr11 59676643 59676852 -91106701 - L1MB8 LINE L1 -2110 4847 4645 1913 128 43 0 chr11 59676852 59677134 -91106419 + AluSx SINE Alu 1 294 -18 5197 214 66 40 chr11 59677134 59677274 -91106279 - L1MB8 LINE L1 -2312 4645 4510 1679 184 0 14 chr11 59677274 59677562 -91105991 - AluJb SINE Alu -28 284 1 5197 214 66 40 chr11 59677562 59677768 -91105785 - L1MB8 LINE L1 -2447 4510 4311 264 30 0 0 chr11 59677768 59677801 -91105752 + (TTG)n Simple_repeat Simple_repeat 1 33 0 5197 214 66 40 chr11 59677801 59678340 -91105213 - L1MB8 LINE L1 -2646 4311 3787 1962 152 13 13 chr11 59678340 59678650 -91104903 - AluJo SINE Alu -2 310 1 5197 214 66 40 chr11 59678650 59678723 -91104830 - L1MB8 LINE L1 -3170 3787 3717 722 195 31 0 chr11 59678723 59678851 -91104702 - FLAM_A SINE Alu -1 132 1 5197 214 66 40 chr11 59678851 59680544 -91103009 - L1MB8 LINE L1 -3240 3717 610 726 140 72 18 chr11 59680555 59680720 -91102833 + MER31B LTR ERV1 285 652 -9 1926 107 0 83 chr11 59680959 59681285 -91102268 - AluSx SINE Alu -13 299 1 360 303 198 13 chr11 59681651 59681889 -91101664 + L1MC4a LINE L1 5665 5946 -1862 219 257 0 0 chr11 59681889 59681963 -91101590 + GA-rich Low_complexity Low_complexity 1 74 0 426 269 15 15 chr11 59682200 59682330 -91101223 - MIR SINE MIR -17 245 116 2333 113 3 0 chr11 59682345 59682656 -91100897 - AluSx SINE Alu 0 312 1 1769 157 3 32 chr11 59682733 59683046 -91100507 + AluJb SINE Alu 1 304 -8 265 291 109 50 chr11 59683084 59683304 -91100249 - L1MC/D LINE L1 -2254 5554 5322 209 135 0 27 chr11 59683305 59683342 -91100211 + (TA)n Simple_repeat Simple_repeat 2 37 0 323 161 0 0 chr11 59683507 59683563 -91099990 + L1MC2 LINE L1 5191 5246 -900 227 189 0 0 chr11 59683565 59683602 -91099951 + AluJo SINE Alu 1 37 -265 184 0 62 31 chr11 59683602 59683634 -91099919 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 3520 34 30 11 chr11 59683658 59683670 -91099883 + L1PA4 LINE L1 5599 5609 -558 3050 136 0 2 chr11 59683670 59684103 -91099450 - L1PA15 LINE L1 0 6165 5734 3520 34 30 11 chr11 59684103 59684675 -91098878 + L1PA4 LINE L1 5609 6167 0 598 157 126 3 chr11 59684675 59684865 -91098688 + AluJo SINE Alu 24 287 -25 2265 103 7 0 chr11 59684866 59685168 -91098385 + AluSx SINE Alu 1 304 -8 2827 150 91 61 chr11 59685175 59685545 -91098008 + L1MC2 LINE L1 5240 5637 -707 2461 125 120 5 chr11 59685545 59685929 -91097624 - MSTA LTR MaLR 0 428 1 2827 150 91 61 chr11 59685929 59686213 -91097340 + L1MC2 LINE L1 5637 5911 -433 904 242 102 20 chr11 59686212 59686612 -91096941 + L1ME4a LINE L1 5558 5989 -173 * 1416 149 18 9 chr11 59686769 59686990 -91096563 - AluJb SINE Alu -89 223 1 1951 138 21 14 chr11 59687100 59687402 -91096151 - AluSx SINE Alu 0 304 1 1927 140 0 0 chr11 59688467 59688739 -91094814 - AluJo SINE Alu -20 292 21 1915 217 159 17 chr11 59689916 59690622 -91092931 - L1MC5 LINE L1 -51 7910 7105 278 279 89 25 chr11 59690654 59690812 -91092741 + L2 LINE L2 2916 3083 -189 5298 119 116 71 chr11 59690937 59691181 -91092372 + Tigger3b DNA MER2_type 88 320 -2708 1775 135 3 36 chr11 59691181 59691485 -91092068 + AluJo SINE Alu 2 295 -17 5298 119 116 71 chr11 59691485 59691711 -91091842 + Tigger3b DNA MER2_type 320 534 -2494 1456 158 49 8 chr11 59691711 59691958 -91091595 - AluJo SINE Alu -30 282 26 5298 119 116 71 chr11 59691958 59692579 -91090974 + Tigger3b DNA MER2_type 534 1229 -2 2052 108 59 0 chr11 59693496 59693782 -91089771 + AluSx SINE Alu 1 303 -9 2104 118 44 0 chr11 59694988 59695285 -91088268 + AluSx SINE Alu 1 310 -2 519 326 72 39 chr11 59695320 59695654 -91087899 + L2 LINE L2 2073 2417 -897 1265 177 0 5 chr11 59695685 59695900 -91087653 - AluY SINE Alu -11 300 87 206 236 351 14 chr11 59696055 59696155 -91087398 + MIR SINE MIR 65 130 -132 1861 138 8 4 chr11 59696155 59696423 -91087130 + AluSx SINE Alu 1 269 -43 206 236 351 14 chr11 59696423 59696470 -91087083 + MIR SINE MIR 130 262 0 214 176 203 0 chr11 59696490 59696564 -91086989 + MIR SINE MIR 158 246 -16 215 255 204 0 chr11 59696618 59696716 -91086837 + L2 LINE L2 2579 2696 -618 196 329 14 29 chr11 59696782 59696852 -91086701 + L2 LINE L2 3191 3259 -13 699 214 148 6 chr11 59697358 59697540 -91086013 - MIR SINE MIR -28 234 27 2263 92 3 0 chr11 59697640 59697933 -91085620 + AluSx SINE Alu 1 294 -18 2398 76 0 10 chr11 59698349 59698651 -91084902 - AluSc SINE Alu -10 299 1 2039 90 0 19 chr11 59699095 59699401 -91084152 + AluSc SINE Alu 18 318 0 2027 118 0 14 chr11 59699810 59700122 -91083431 + AluSq SINE Alu 1 308 0 2192 109 0 10 chr11 59700351 59700662 -91082891 - AluSx SINE Alu -4 308 1 30 83 0 0 chr11 59700921 59700993 -91082560 + AT_rich Low_complexity Low_complexity 1 72 0 957 85 0 0 chr11 59700993 59701111 -91082442 - AluJb SINE Alu -194 118 1 26 0 0 0 chr11 59701113 59701139 -91082414 + AT_rich Low_complexity Low_complexity 1 26 0 2115 99 14 3 chr11 59701598 59701890 -91081663 + AluSx SINE Alu 1 295 -17 235 301 9 62 chr11 59701936 59702067 -91081486 + MIR SINE MIR 43 165 -61 838 298 110 56 chr11 59702067 59702261 -91081292 - L2 LINE L2 -5 3308 3126 1945 110 21 7 chr11 59702261 59702551 -91081002 + AluJo SINE Alu 1 294 -18 838 298 110 56 chr11 59702551 59702890 -91080663 - L2 LINE L2 -187 3126 2807 1543 209 0 0 chr11 59702890 59703172 -91080381 - AluJo SINE Alu -30 282 1 838 298 110 56 chr11 59703172 59703391 -91080162 - L2 LINE L2 -506 2807 2601 1852 157 0 17 chr11 59703391 59703685 -91079868 + AluJo SINE Alu 1 289 -23 838 298 110 56 chr11 59703685 59703854 -91079699 - L2 LINE L2 -712 2601 2325 2302 101 3 0 chr11 59703855 59704152 -91079401 - AluSp SINE Alu -15 298 1 322 268 49 0 chr11 59704278 59704360 -91079193 - MIR SINE MIR -73 189 104 291 351 48 16 chr11 59704826 59705014 -91078539 - L2 LINE L2 -407 2907 2714 1883 154 7 3 chr11 59705122 59705421 -91078132 + AluJo SINE Alu 5 304 -8 481 254 82 0 chr11 59705719 59705829 -91077724 - L2 LINE L2 -5 3267 3149 2311 107 0 0 chr11 59706038 59706338 -91077215 - AluSx SINE Alu -12 300 1 183 80 0 0 chr11 59706973 59706998 -91076555 + (ATG)n Simple_repeat Simple_repeat 2 26 0 2217 72 0 7 chr11 59707066 59707344 -91076209 + AluY SINE Alu 27 302 -9 1525 147 94 4 chr11 59707351 59707617 -91075936 + AluJo SINE Alu 1 290 -22 236 343 15 66 chr11 59707677 59707814 -91075739 - MIR3 SINE MIR -73 135 6 2166 112 3 28 chr11 59707894 59708215 -91075338 - AluSq SINE Alu 0 313 1 1936 126 32 3 chr11 59708856 59709141 -91074412 + AluJo SINE Alu 1 293 -19 227 313 0 50 chr11 59711777 59711876 -91071677 - L2 LINE L2 -261 3011 2918 252 307 146 58 chr11 59712126 59712715 -91070838 - L2 LINE L2 -763 2551 1911 1574 149 0 77 chr11 59712725 59712913 -91070640 - AluSg SINE Alu -12 298 144 1358 147 3 80 chr11 59712913 59713227 -91070326 - AluY SINE Alu -10 291 2 1574 149 0 77 chr11 59713227 59713361 -91070192 - AluSg SINE Alu -166 144 1 1004 114 0 0 chr11 59713365 59713497 -91070056 - AluSq/x SINE Alu -180 133 2 4140 153 24 6 chr11 59713498 59714171 -91069382 - MER72 LTR ERV1 -37 685 1 1448 81 76 5 chr11 59714230 59714441 -91069112 + MER30 DNA MER1_type 1 226 -4 1789 146 14 0 chr11 59714593 59714888 -91068665 + AluSx SINE Alu 1 299 -13 332 302 119 50 chr11 59715033 59715140 -91068413 - MIR SINE MIR -56 206 83 1554 85 186 12 chr11 59715140 59715387 -91068166 + AluSg SINE Alu 1 290 -20 332 302 119 50 chr11 59715387 59715438 -91068115 - MIR SINE MIR -179 83 37 291 278 93 37 chr11 59717296 59717404 -91066149 + MIR SINE MIR 28 141 -121 2108 92 17 0 chr11 59717464 59717756 -91065797 + AluSp SINE Alu 1 297 -16 338 326 43 14 chr11 59717787 59717928 -91065625 + MIR SINE MIR 112 256 -6 380 173 269 10 chr11 59720314 59720418 -91063135 + FLAM_C SINE Alu 3 133 0 1903 123 0 36 chr11 59721148 59721450 -91062103 - AluSx SINE Alu -21 291 1 23 0 0 0 chr11 59721516 59721539 -91062014 + AT_rich Low_complexity Low_complexity 1 23 0 2181 82 27 0 chr11 59724320 59724612 -91058941 - AluSx SINE Alu -12 300 1 637 250 0 7 chr11 59724678 59724814 -91058739 + FLAM_A SINE Alu 1 135 -7 382 307 62 56 chr11 59724814 59724993 -91058560 + L2 LINE L2 3043 3222 -50 492 321 91 41 chr11 59725171 59725489 -91058064 + L2 LINE L2 2173 2506 -808 2050 98 54 0 chr11 59725492 59725788 -91057765 - AluSx SINE Alu 0 312 1 1571 183 35 7 chr11 59725792 59726081 -91057472 - AluJb SINE Alu -15 297 1 825 171 0 0 chr11 59726082 59726211 -91057342 - AluJo/FLAM SINE Alu -173 129 1 768 200 110 114 chr11 59726237 59726422 -91057131 - MIR SINE MIR -6 256 71 902 150 0 0 chr11 59726422 59726555 -91056998 + FLAM_C SINE Alu 1 133 0 768 200 110 114 chr11 59726555 59726614 -91056939 - MIR SINE MIR -191 71 13 308 331 72 32 chr11 59726667 59726918 -91056635 + L2 LINE L2 2578 2838 -476 262 310 164 0 chr11 59726965 59727081 -91056472 + L2 LINE L2 2920 3054 -218 272 285 92 46 chr11 59727323 59727453 -91056100 + MIR SINE MIR 57 192 -70 2096 105 16 3 chr11 59727457 59727763 -91055790 + AluSx SINE Alu 1 310 -2 301 196 14 0 chr11 59727823 59727885 -91055668 - MIR SINE MIR -67 141 92 2148 107 0 3 chr11 59728085 59728394 -91055159 + AluSg SINE Alu 1 308 -2 1805 149 14 3 chr11 59728403 59728692 -91054861 + AluSx SINE Alu 1 292 -20 290 257 128 0 chr11 59728706 59728815 -91054738 - MIR SINE MIR -8 254 132 889 257 39 43 chr11 59729381 59729638 -91053915 + MIR SINE MIR 7 262 0 2162 69 35 0 chr11 59730242 59730530 -91053023 + AluSx SINE Alu 1 298 -14 2171 68 7 3 chr11 59731761 59732056 -91051497 + AluSg SINE Alu 1 296 -14 749 158 63 0 chr11 59732065 59732192 -91051361 - AluJb SINE Alu -47 265 131 1863 118 7 10 chr11 59732194 59732513 -91051040 - AluY SINE Alu 0 311 1 296 262 146 10 chr11 59732523 59732626 -91050927 + MLT1J1 LTR MaLR 206 322 -124 327 296 90 16 chr11 59732655 59732844 -91050709 - L1MC5 LINE L1 -36 7925 7723 2201 85 7 10 chr11 59732845 59733152 -91050401 + AluSq SINE Alu 1 306 -7 2382 43 0 0 chr11 59733300 59733580 -91049973 - AluY SINE Alu -31 280 1 29 28 0 0 chr11 59733868 59733904 -91049649 + AT_rich Low_complexity Low_complexity 1 36 0 2145 81 0 48 chr11 59733912 59734222 -91049331 + AluSx SINE Alu 1 295 -17 642 171 45 0 chr11 59734225 59734336 -91049217 - FLAM_A SINE Alu -17 116 1 229 364 0 8 chr11 59734430 59734548 -91049005 + CT-rich Low_complexity Low_complexity 3 119 0 2284 85 0 13 chr11 59734931 59735247 -91048306 + AluSx SINE Alu 1 312 0 2268 100 0 0 chr11 59735261 59735570 -91047983 + AluSc SINE Alu 1 309 0 771 241 147 35 chr11 59736081 59736429 -91047124 - L2 LINE L2 -5 3308 2922 1524 157 56 36 chr11 59736814 59737120 -91046433 - AluJb SINE Alu 0 312 1 469 143 9 9 chr11 59737672 59737777 -91045776 + CT-rich Low_complexity Low_complexity 2 106 0 1372 185 108 0 chr11 59738062 59738322 -91045231 - AluJo SINE Alu -24 288 1 1001 144 29 6 chr11 59738342 59738516 -91045037 - AluSq SINE Alu -15 298 121 28 0 0 0 chr11 59738516 59738544 -91045009 + AT_rich Low_complexity Low_complexity 1 28 0 1844 138 17 17 chr11 59738544 59738840 -91044713 + AluSx SINE Alu 1 296 -16 2043 113 3 0 chr11 59739581 59739902 -91043651 - AluSx SINE Alu 0 322 1 183 313 161 9 chr11 59739920 59740032 -91043521 - MER5A DNA MER1_type -45 144 16 726 169 48 0 chr11 59740112 59740236 -91043317 + FLAM_A SINE Alu 1 130 -3 189 0 0 0 chr11 59740238 59740259 -91043294 + (CA)n Simple_repeat Simple_repeat 2 22 0 1792 121 0 4 chr11 59742194 59742459 -91041094 - AluSx SINE Alu -48 264 1 1884 145 0 3 chr11 59744946 59745243 -91038310 - AluJo SINE Alu -16 296 1 242 283 158 26 chr11 59745305 59745457 -91038096 + MIR SINE MIR 20 191 -71 2201 105 7 0 chr11 59745821 59746125 -91037428 - AluSq SINE Alu -7 306 1 2061 146 77 16 chr11 59747254 59747632 -91035921 - MER57A LTR ERV1 -2 401 1 2049 125 20 0 chr11 59747892 59748195 -91035358 + AluSx SINE Alu 1 309 -3 2355 43 0 0 chr11 59748279 59748561 -91034992 + AluY SINE Alu 14 295 -16 1654 157 21 11 chr11 59748800 59749110 -91034443 - AluJb SINE Alu 0 313 1 880 183 0 6 chr11 59749151 59749315 -91034238 + AluJb SINE Alu 137 299 -13 1917 148 0 7 chr11 59749390 59749693 -91033860 - AluSx SINE Alu -11 301 1 329 323 20 10 chr11 59749874 59749973 -91033580 - MIR SINE MIR -80 128 29 771 263 82 4 chr11 59750114 59750346 -91033207 - MIR SINE MIR 0 262 13 2092 83 4 0 chr11 59750458 59750734 -91032819 - AluSg SINE Alu -33 277 1 2017 112 0 7 chr11 59751145 59751450 -91032103 + AluY SINE Alu 1 303 -8 381 257 218 22 chr11 59751848 59752027 -91031526 + MIR SINE MIR 1 214 -48 204 186 47 0 chr11 59752375 59752418 -91031135 - MIR SINE MIR -59 203 159 1425 96 73 18 chr11 59754467 59754685 -91028868 + MER30 DNA MER1_type 1 230 0 1606 132 44 22 chr11 59754989 59755261 -91028292 - AluSx SINE Alu -24 288 11 2368 90 0 0 chr11 59755269 59755579 -91027974 - AluSx SINE Alu -2 310 1 331 83 33 0 chr11 59756644 59756704 -91026849 + (CCA)n Simple_repeat Simple_repeat 3 64 0 1865 105 18 0 chr11 59757360 59757665 -91025888 + AluSx SINE Alu 1 310 0 2076 115 0 0 chr11 59757704 59757991 -91025562 + AluSx SINE Alu 1 287 -25 24 0 0 0 chr11 59759015 59759039 -91024514 + AT_rich Low_complexity Low_complexity 1 24 0 328 232 29 107 chr11 59759409 59759515 -91024038 + MER112 DNA MER1_type 9 122 -138 2068 75 68 0 chr11 59759515 59759794 -91023759 + AluY SINE Alu 1 298 -13 328 232 29 107 chr11 59759794 59759832 -91023721 + MER112 DNA MER1_type 122 161 -99 1155 160 4 84 chr11 59759832 59760070 -91023483 - MER20 DNA MER1_type 0 219 1 328 232 29 107 chr11 59760070 59760196 -91023357 + MER112 DNA MER1_type 161 259 -1 673 290 117 16 chr11 59760365 59760613 -91022940 - Charlie8 DNA MER1_type -2143 274 2 2070 134 0 0 chr11 59762335 59762634 -91020919 + AluSx SINE Alu 1 299 -13 2649 147 56 40 chr11 59762634 59763020 -91020533 + MER4E-int LTR ERV1 6080 6479 -279 2109 110 3 3 chr11 59763020 59763330 -91020223 + AluSx SINE Alu 2 311 -1 2649 147 56 40 chr11 59763330 59763500 -91020053 + MER4E-int LTR ERV1 6479 6645 -113 5316 63 47 21 chr11 59764334 59765058 -91018495 + MER4E LTR ERV1 1 746 -20 1658 41 0 0 chr11 59765058 59765255 -91018298 - AluY SINE Alu -19 292 96 5316 63 47 21 chr11 59765255 59765277 -91018276 + MER4E LTR ERV1 746 766 0 5714 114 121 46 chr11 59765278 59766317 -91017236 + MER4E-int LTR ERV1 2 1118 -5640 180 0 0 0 chr11 59766451 59766471 -91017082 + (A)n Simple_repeat Simple_repeat 1 20 0 2176 93 7 3 chr11 59766680 59766982 -91016571 + AluSc SINE Alu 5 307 -2 434 224 289 0 chr11 59767342 59767494 -91016059 - MER58C DNA MER1_type -2 213 18 352 344 94 0 chr11 59768139 59768267 -91015286 + MIR3 SINE MIR 8 147 -61 242 195 136 51 chr11 59768438 59768556 -91014997 - L1ME4a LINE L1 -113 6008 5881 225 0 0 0 chr11 59768588 59768613 -91014940 + (T)n Simple_repeat Simple_repeat 1 25 0 2131 68 7 7 chr11 59769178 59769474 -91014079 + AluSg SINE Alu 1 296 -14 727 173 58 14 chr11 59769483 59769622 -91013931 - AluJb SINE Alu -47 265 121 207 0 0 0 chr11 59769622 59769645 -91013908 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1879 125 11 4 chr11 59769649 59769930 -91013623 - AluSq SINE Alu -30 283 1 207 0 0 0 chr11 59770504 59770527 -91013026 + (CA)n Simple_repeat Simple_repeat 1 23 0 1828 115 42 7 chr11 59770796 59771083 -91012470 + AluSq SINE Alu 11 307 -6 1912 143 13 0 chr11 59771276 59771583 -91011970 - AluSx SINE Alu -1 311 1 1728 145 21 14 chr11 59771586 59771876 -91011677 - AluJb SINE Alu -20 292 1 334 272 88 41 chr11 59771941 59772033 -91011520 - L2 LINE L2 -1 3312 3209 2160 88 0 10 chr11 59772033 59772328 -91011225 - AluSg SINE Alu -18 292 1 334 272 88 41 chr11 59772328 59772382 -91011171 - L2 LINE L2 -104 3209 3159 384 293 194 14 chr11 59773049 59773271 -91010282 + MIR SINE MIR 1 262 0 496 263 67 106 chr11 59773328 59773379 -91010174 - MIR SINE MIR 0 262 211 1778 138 32 0 chr11 59773379 59773661 -91009892 - AluSx SINE Alu -21 291 1 496 263 67 106 chr11 59773661 59773864 -91009689 - MIR SINE MIR -51 211 18 2138 112 3 3 chr11 59773873 59774176 -91009377 - AluSq SINE Alu -10 303 1 2224 83 3 7 chr11 59774512 59774813 -91008740 - AluSp SINE Alu -13 300 1 2116 113 0 0 chr11 59774844 59775145 -91008408 + AluSx SINE Alu 1 301 -11 188 35 35 0 chr11 59775169 59775198 -91008355 + (TA)n Simple_repeat Simple_repeat 1 30 0 2115 97 0 7 chr11 59775972 59776270 -91007283 - AluSg SINE Alu -14 296 1 1753 152 17 3 chr11 59777170 59777459 -91006094 - AluJo SINE Alu -19 293 1 299 135 19 19 chr11 59777511 59777563 -91005990 - Alu SINE Alu -250 52 1 2257 91 3 0 chr11 59777576 59777873 -91005680 - AluSp SINE Alu -15 298 1 472 248 34 8 chr11 59778590 59778707 -91004846 + L2 LINE L2 3189 3308 -5 22 0 0 0 chr11 59779523 59779545 -91004008 + AT_rich Low_complexity Low_complexity 1 22 0 1905 85 8 0 chr11 59779550 59779798 -91003755 + AluSc SINE Alu 1 250 -59 25 0 0 0 chr11 59779798 59779823 -91003730 + AT_rich Low_complexity Low_complexity 1 25 0 235 250 0 0 chr11 59779913 59779961 -91003592 + (CA)n Simple_repeat Simple_repeat 1 48 0 2125 102 0 7 chr11 59781519 59781824 -91001729 + AluSg SINE Alu 1 303 -7 2087 112 0 13 chr11 59781999 59782304 -91001249 - AluSx SINE Alu -1 311 11 341 311 56 0 chr11 59782630 59782720 -91000833 + L2 LINE L2 3140 3234 -38 630 204 7 49 chr11 59783131 59783273 -91000280 - FLAM_C SINE Alu -1 142 7 2366 61 0 0 chr11 59783625 59783919 -90999634 - AluSg SINE Alu -16 294 1 974 127 115 6 chr11 59783925 59784082 -90999471 - FAM SINE Alu 0 175 2 2917 70 0 0 chr11 59784880 59785251 -90998302 + L1PA5 LINE L1 5782 6152 -2 2030 99 0 0 chr11 59785310 59785582 -90997971 - AluSx SINE Alu -8 304 33 198 0 0 0 chr11 59785591 59785613 -90997940 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1012 63 0 0 chr11 59785613 59785739 -90997814 - AluSc SINE Alu -183 126 1 22 35 0 0 chr11 59785739 59785768 -90997785 + AT_rich Low_complexity Low_complexity 1 29 0 222 214 0 0 chr11 59785985 59786027 -90997526 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 229 349 75 9 chr11 59786068 59786174 -90997379 - L2 LINE L2 -6 3266 3154 1773 121 0 96 chr11 59786231 59786563 -90996990 - AluSx SINE Alu -12 300 1 308 178 287 0 chr11 59786610 59786711 -90996842 - MIR SINE MIR -118 144 15 2202 132 3 35 chr11 59787143 59787275 -90996278 - MER1B DNA MER1_type -2373 337 202 1509 123 35 0 chr11 59787275 59787502 -90996051 + AluSq SINE Alu 1 235 -78 2202 132 3 35 chr11 59787502 59787717 -90995836 - MER1B DNA MER1_type -2508 202 1 268 176 44 29 chr11 59787863 59787931 -90995622 - MADE1 DNA Mariner -11 69 1 198 91 0 0 chr11 59787983 59788016 -90995537 + (TC)n Simple_repeat Simple_repeat 1 33 0 2134 103 30 0 chr11 59788233 59788534 -90995019 - AluSx SINE Alu -2 310 1 1936 143 0 0 chr11 59788611 59788904 -90994649 - AluSx SINE Alu -19 293 1 1630 151 0 64 chr11 59789072 59789223 -90994330 + AluSx SINE Alu 2 124 -188 2168 97 7 0 chr11 59789223 59789513 -90994040 + AluSp SINE Alu 1 292 -21 1630 151 0 64 chr11 59789513 59789673 -90993880 + AluSx SINE Alu 124 293 -19 1619 143 3 37 chr11 59789754 59790054 -90993499 + AluJo SINE Alu 9 298 -14 1293 128 54 10 chr11 59790681 59790884 -90992669 + AluJo SINE Alu 6 217 -95 761 284 115 22 chr11 59790907 59791025 -90992528 + L2 LINE L2 2967 3073 -240 1857 117 21 0 chr11 59791025 59791315 -90992238 - AluJo SINE Alu -16 296 1 761 284 115 22 chr11 59791315 59791509 -90992044 + L2 LINE L2 3073 3308 -5 238 297 9 69 chr11 59791509 59791641 -90991912 - MIR SINE MIR -61 147 43 2022 99 14 3 chr11 59791687 59791979 -90991574 - AluSx SINE Alu -17 295 1 299 280 106 29 chr11 59793500 59793650 -90989903 - MIR SINE MIR -67 141 8 242 320 67 0 chr11 59793652 59793727 -90989826 - L2 LINE L2 -5 3308 3229 1668 204 109 21 chr11 59793887 59794363 -90989190 - LTR48B LTR ERV1 0 644 127 293 267 12 47 chr11 59794341 59794427 -90989126 - MER34 LTR ERV1 -437 105 23 * 1159 191 133 65 chr11 59794551 59794916 -90988637 - MER34-int LTR ERV1 -164 6167 5765 1491 185 7 20 chr11 59794916 59795219 -90988334 - AluJo SINE Alu -8 304 6 1159 191 133 65 chr11 59795219 59795298 -90988255 - MER34-int LTR ERV1 -566 5765 5693 458 200 81 62 chr11 59795297 59795447 -90988106 - MER34-int LTR ERV1 -1614 4717 4581 * 2210 112 0 3 chr11 59795447 59795761 -90987792 + AluSq SINE Alu 1 313 0 562 158 8 31 chr11 59795783 59795910 -90987643 - MER34-int LTR ERV1 -3827 4293 4170 5914 65 53 43 chr11 59795919 59796865 -90986688 - SVA Other Other 0 1386 432 5567 70 20 55 chr11 59796924 59797821 -90985732 - SVA Other Other -520 866 1 257 67 0 22 chr11 59797821 59797866 -90985687 + (GGGAGA)n Simple_repeat Simple_repeat 1 44 0 2137 89 0 10 chr11 59798741 59799043 -90984510 - AluSg SINE Alu -11 299 1 1396 156 41 165 chr11 59799045 59799122 -90984431 + MER4E-int LTR ERV1 1595 1680 -4651 2288 76 7 3 chr11 59799122 59799423 -90984130 - AluSg SINE Alu -8 302 1 1396 156 41 165 chr11 59799423 59799598 -90983955 + MER4E-int LTR ERV1 1680 1771 -4560 1966 126 19 10 chr11 59799598 59799907 -90983646 - AluJb SINE Alu 0 312 1 1396 156 41 165 chr11 59799907 59800095 -90983458 + MER4E-int LTR ERV1 1771 1981 -4350 991 120 0 0 chr11 59800096 59800229 -90983324 + AluSq/x SINE Alu 1 133 -180 516 286 15 8 chr11 59800234 59800367 -90983186 + MER4E-int LTR ERV1 1967 2100 -4231 232 254 0 16 chr11 59800367 59800430 -90983123 + (TATG)n Simple_repeat Simple_repeat 1 62 0 1786 151 17 0 chr11 59800494 59800785 -90982768 - AluSx SINE Alu -16 296 1 718 237 29 39 chr11 59800845 59801052 -90982501 - LTR49-int LTR ERV1 -5042 1289 1085 1720 131 33 4 chr11 59801114 59801388 -90982165 + AluSx SINE Alu 1 282 -30 180 0 0 0 chr11 59801388 59801408 -90982145 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr11 59801409 59801432 -90982121 + AT_rich Low_complexity Low_complexity 1 23 0 1470 141 119 11 chr11 59801433 59801702 -90981851 - AluSg1 SINE Alu -11 298 1 1590 201 23 13 chr11 59801733 59802032 -90981521 - LTR49-int LTR ERV1 -5428 903 602 40 0 0 0 chr11 59802052 59802092 -90981461 + AT_rich Low_complexity Low_complexity 1 40 0 1468 184 0 21 chr11 59802099 59802387 -90981166 - AluJo SINE Alu -30 282 1 2543 122 102 88 chr11 59802473 59802920 -90980633 + MER4E-int LTR ERV1 2486 2925 -3833 1892 137 7 0 chr11 59802920 59803220 -90980333 + AluSx SINE Alu 5 306 -6 2543 122 102 88 chr11 59803220 59803283 -90980270 + MER4E-int LTR ERV1 2925 2986 -3772 2233 96 0 34 chr11 59803283 59803605 -90979948 + AluSq SINE Alu 1 311 -2 2543 122 102 88 chr11 59803605 59803617 -90979936 + MER4E-int LTR ERV1 2986 2996 -3762 2052 80 4 11 chr11 59803617 59803923 -90979630 + AluSg SINE Alu 12 315 0 2543 122 102 88 chr11 59803923 59804002 -90979551 + MER4E-int LTR ERV1 2996 3099 -3659 * 4067 135 42 17 chr11 59803988 59804638 -90978915 + MER4E-int LTR ERV1 3423 4088 -2670 1526 99 9 90 chr11 59804637 59804843 -90978710 + MER4E-int LTR ERV1 4452 4711 -2047 * 2207 109 0 3 chr11 59804843 59805154 -90978399 + AluSg SINE Alu 1 310 0 1526 99 9 90 chr11 59805154 59805293 -90978260 + MER4E-int LTR ERV1 4711 4860 -1898 4041 134 70 37 chr11 59805326 59805540 -90978013 + MER4E-int LTR ERV1 5854 6059 -699 2146 111 0 3 chr11 59805540 59805837 -90977716 + AluSx SINE Alu 1 296 -16 4041 134 70 37 chr11 59805837 59806217 -90977336 + MER4E-int LTR ERV1 6059 6482 -276 2109 110 3 3 chr11 59806217 59806527 -90977026 + AluSx SINE Alu 2 311 -1 4041 134 70 37 chr11 59806527 59806697 -90976856 + MER4E-int LTR ERV1 6482 6645 -113 5316 63 47 21 chr11 59807531 59808255 -90975298 + MER4E LTR ERV1 1 746 -20 1658 41 0 0 chr11 59808255 59808452 -90975101 - AluY SINE Alu -19 292 96 5316 63 47 21 chr11 59808452 59808474 -90975079 + MER4E LTR ERV1 746 766 0 5909 117 117 44 chr11 59808475 59809555 -90973998 + MER4E-int LTR ERV1 2 1159 -5599 1641 111 99 23 chr11 59809569 59809911 -90973642 + MER4E-int LTR ERV1 1756 2123 -4475 1945 97 14 24 chr11 59809915 59810205 -90973348 + AluSg SINE Alu 5 291 -19 2201 76 0 3 chr11 59810239 59810527 -90973026 + AluSx SINE Alu 11 297 -15 711 256 135 0 chr11 59810603 59810810 -90972743 - MIR SINE MIR -26 236 2 280 216 82 41 chr11 59810886 59810983 -90972570 + L1MC4 LINE L1 7926 8026 -16 2101 98 34 3 chr11 59811103 59811399 -90972154 + AluSg SINE Alu 1 305 -5 443 204 0 11 chr11 59812234 59812327 -90971226 - AluSg/x SINE Alu -3 309 218 822 149 176 0 chr11 59812327 59812475 -90971078 - AluJb SINE Alu -138 174 1 2019 147 0 7 chr11 59812596 59812902 -90970651 + AluJo SINE Alu 1 304 -8 339 289 83 25 chr11 59813048 59813169 -90970384 - L2 LINE L2 -6 3266 3139 327 276 47 24 chr11 59813576 59813703 -90969850 + MIR SINE MIR 2 131 -131 183 80 0 0 chr11 59816449 59816474 -90967079 + (TC)n Simple_repeat Simple_repeat 2 26 0 195 114 0 0 chr11 59816712 59816747 -90966806 + (TA)n Simple_repeat Simple_repeat 1 35 0 2423 56 28 0 chr11 59817110 59817398 -90966155 - AluSp SINE Alu -13 300 5 2476 64 3 3 chr11 59817644 59817942 -90965611 + AluSp SINE Alu 2 299 -14 2177 122 3 3 chr11 59818279 59818582 -90964971 + AluSq SINE Alu 1 303 -10 476 263 67 106 chr11 59818591 59818794 -90964759 + MIR SINE MIR 18 211 -51 1865 138 32 0 chr11 59818794 59819076 -90964477 + AluSx SINE Alu 1 291 -21 476 263 67 106 chr11 59819076 59819127 -90964426 + MIR SINE MIR 211 262 0 982 202 15 25 chr11 59819284 59819487 -90964066 - LTR49-int LTR ERV1 -5529 802 602 39 0 0 0 chr11 59819507 59819546 -90964007 + AT_rich Low_complexity Low_complexity 1 39 0 1550 181 0 21 chr11 59819553 59819841 -90963712 - AluJo SINE Alu -30 282 1 2641 122 102 88 chr11 59819927 59820374 -90963179 + MER4E-int LTR ERV1 2486 2925 -3833 1999 137 7 0 chr11 59820374 59820674 -90962879 + AluSx SINE Alu 5 306 -6 2641 122 102 88 chr11 59820674 59820737 -90962816 + MER4E-int LTR ERV1 2925 2986 -3772 2345 96 0 34 chr11 59820737 59821059 -90962494 + AluSq SINE Alu 1 311 -2 2641 122 102 88 chr11 59821059 59821071 -90962482 + MER4E-int LTR ERV1 2986 2996 -3762 2153 80 4 11 chr11 59821071 59821377 -90962176 + AluSg SINE Alu 12 315 0 2641 122 102 88 chr11 59821377 59821456 -90962097 + MER4E-int LTR ERV1 2996 3099 -3659 * 4107 135 42 17 chr11 59821442 59822092 -90961461 + MER4E-int LTR ERV1 3423 4088 -2670 1548 99 9 90 chr11 59822091 59822297 -90961256 + MER4E-int LTR ERV1 4452 4711 -2047 * 2316 109 0 3 chr11 59822297 59822608 -90960945 + AluSg SINE Alu 1 310 0 1548 99 9 90 chr11 59822608 59822747 -90960806 + MER4E-int LTR ERV1 4711 4860 -1898 4095 134 70 40 chr11 59822780 59822994 -90960559 + MER4E-int LTR ERV1 5854 6060 -698 2256 111 0 3 chr11 59822994 59823291 -90960262 + AluSx SINE Alu 1 296 -16 4095 134 70 40 chr11 59823291 59823671 -90959882 + MER4E-int LTR ERV1 6060 6479 -279 2201 101 3 10 chr11 59823671 59823978 -90959575 + AluSx SINE Alu 2 306 -6 4095 134 70 40 chr11 59823978 59824151 -90959402 + MER4E-int LTR ERV1 6479 6645 -113 5605 63 47 21 chr11 59824985 59825709 -90957844 + MER4E LTR ERV1 1 746 -20 1732 41 0 0 chr11 59825709 59825906 -90957647 - AluY SINE Alu -19 292 96 5605 63 47 21 chr11 59825906 59825928 -90957625 + MER4E LTR ERV1 746 766 0 5870 117 117 44 chr11 59825929 59827009 -90956544 + MER4E-int LTR ERV1 2 1159 -5599 1694 111 99 23 chr11 59827023 59827365 -90956188 + MER4E-int LTR ERV1 1756 2123 -4475 2046 97 14 24 chr11 59827369 59827659 -90955894 + AluSg SINE Alu 5 291 -19 2404 81 7 3 chr11 59827687 59827994 -90955559 + AluSq SINE Alu 5 312 -1 2355 84 7 3 chr11 59827994 59828292 -90955261 + AluSq SINE Alu 1 299 -14 1771 166 79 13 chr11 59828294 59828665 -90954888 + MER4E-int LTR ERV1 2095 2493 -4265 2250 117 7 0 chr11 59828665 59828973 -90954580 - AluSx SINE Alu -2 310 1 1115 131 61 5 chr11 59828992 59829190 -90954363 + MER4E LTR ERV1 558 766 0 913 186 60 53 chr11 59829190 59829648 -90953905 - LTR49-int LTR ERV1 -4488 1458 154 482 202 77 0 chr11 59829678 59829782 -90953771 + LTR48B LTR ERV1 533 644 0 328 176 0 0 chr11 59830222 59830273 -90953280 + MER21B LTR ERV1 315 365 -498 * 774 174 94 7 chr11 59830260 59830409 -90953144 - MER21B LTR ERV1 -528 335 174 1903 137 45 0 chr11 59830410 59830702 -90952851 - MER7A DNA MER2_type -42 304 2 189 0 0 0 chr11 59830787 59830808 -90952745 + (T)n Simple_repeat Simple_repeat 1 21 0 24 0 0 0 chr11 59831717 59831741 -90951812 + AT_rich Low_complexity Low_complexity 1 24 0 2066 108 0 4 chr11 59831742 59832019 -90951534 - AluSx SINE Alu -32 280 5 241 214 0 0 chr11 59832117 59832159 -90951394 - MIR SINE MIR -17 245 204 281 279 143 62 chr11 59832970 59833292 -90950261 + LTR16C LTR ERVL 93 440 -51 202 299 26 13 chr11 59833463 59833540 -90950013 - L2 LINE L2 -5 3308 3231 336 247 124 0 chr11 59833673 59833770 -90949783 + MIR SINE MIR 38 146 -116 4886 196 60 14 chr11 59834028 59834215 -90949338 + L1MC3 LINE L1 6697 6874 -911 486 79 0 0 chr11 59834215 59834291 -90949262 + (TG)n Simple_repeat Simple_repeat 2 77 0 4886 196 60 14 chr11 59834291 59835144 -90948409 + L1MC3 LINE L1 6874 7785 0 207 311 33 0 chr11 59835442 59835503 -90948050 - L2 LINE L2 -6 3266 3204 182 181 64 128 chr11 59836062 59836156 -90947397 + L3 LINE CR1 1038 1125 -452 2201 219 107 33 chr11 59936455 59937212 -90846341 - HAL1 LINE L1 -700 1807 995 960 161 0 78 chr11 59937212 59937405 -90846148 + AluJo SINE Alu 1 178 -134 706 320 57 10 chr11 59937406 59937706 -90845847 - HAL1 LINE L1 -2185 322 9 317 226 26 133 chr11 59937720 59937954 -90845599 - L1MEd LINE L1 -5168 951 743 1987 133 10 3 chr11 59937954 59938256 -90845297 - AluSq SINE Alu 0 313 10 299 286 43 0 chr11 59938626 59938696 -90844857 + Tigger1 DNA MER2_type 279 351 -2067 7921 109 28 6 chr11 59938699 59939858 -90843695 + Tigger1 DNA MER2_type 1235 2418 0 429 282 28 17 chr11 59940213 59940394 -90843159 - HAL1 LINE L1 -841 1666 1484 316 288 22 36 chr11 59940402 59940541 -90843012 - L1MEd LINE L1 -5038 1081 945 2013 115 0 17 chr11 59940544 59940857 -90842696 - AluSx SINE Alu 0 308 1 550 287 117 13 chr11 59941086 59941403 -90842150 - L1MC4a LINE L1 -1868 5940 5591 8198 22 1 0 chr11 59941411 59942999 -90840554 + L1PA3 LINE L1 4567 6155 0 230 0 0 32 chr11 59943002 59943033 -90840520 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 2296 91 10 3 chr11 59943863 59944172 -90839381 - AluSq SINE Alu 0 313 3 2061 107 0 86 chr11 59945372 59945709 -90837844 + AluSq SINE Alu 1 308 -5 297 280 13 0 chr11 59946602 59946677 -90836876 + MIR SINE MIR 162 237 -25 278 130 87 0 chr11 59947034 59947080 -90836473 + L2 LINE L2 3264 3313 0 920 142 0 15 chr11 59947341 59947475 -90836078 + FLAM_C SINE Alu 2 133 0 437 346 26 52 chr11 59948008 59948314 -90835239 - MLT1K LTR MaLR -162 426 129 180 120 0 0 chr11 59948326 59948351 -90835202 + L3 LINE CR1 1515 1539 -38 919 240 0 5 chr11 59948926 59949126 -90834427 - MLT1E2 LTR MaLR -387 239 41 1041 200 61 30 chr11 59949259 59949489 -90834064 - MER58 DNA MER1_type -2140 280 44 2199 89 0 20 chr11 59949491 59949783 -90833770 + AluY SINE Alu 1 286 -25 231 294 93 62 chr11 59949842 59950036 -90833517 + MLT1J2 LTR MaLR 251 450 0 5689 156 18 12 chr11 59950101 59951916 -90831637 - L1PA16 LINE L1 -2 6164 4341 234 318 87 77 chr11 59953049 59953360 -90830193 - L2 LINE L2 -88 3184 2871 250 215 165 13 chr11 59953411 59953490 -90830063 + MIR SINE MIR 161 251 -11 2116 143 0 0 chr11 59953735 59954036 -90829517 + AluSx SINE Alu 1 301 -11 1390 244 118 10 chr11 59954345 59954822 -90828731 + MLT1G1 LTR MaLR 10 587 -8 187 306 0 20 chr11 59954920 59954969 -90828584 - MIR SINE MIR -195 67 20 308 294 29 81 chr11 59955374 59955510 -90828043 + MIR SINE MIR 10 138 -124 228 248 107 91 chr11 59956233 59956292 -90827261 + MLT1J2 LTR MaLR 273 330 -120 961 243 14 9 chr11 59956292 59956506 -90827047 - MER58C DNA MER1_type 0 215 1 228 248 107 91 chr11 59956506 59956567 -90826986 + MLT1J2 LTR MaLR 330 395 -55 781 126 0 0 chr11 59957067 59957170 -90826383 + U6 snRNA snRNA 1 103 -4 2312 120 0 0 chr11 59957171 59957480 -90826073 - AluSx SINE Alu -3 309 1 237 120 120 0 chr11 59957494 59957544 -90826009 + L1PA16 LINE L1 6111 6166 0 273 277 24 36 chr11 59958077 59958160 -90825393 + MIR SINE MIR 2 83 -179 2079 70 3 89 chr11 59958381 59958696 -90824857 + AluSc SINE Alu 1 288 -21 203 267 60 134 chr11 59958700 59958917 -90824636 - MIR SINE MIR -12 250 50 358 316 29 7 chr11 59959728 59959867 -90823686 + MIR SINE MIR 17 158 -104 724 284 162 9 chr11 59959914 59960134 -90823419 + L2 LINE L2 2928 3113 -200 231 36 0 0 chr11 59960134 59960162 -90823391 + (CA)n Simple_repeat Simple_repeat 1 28 0 724 284 162 9 chr11 59960162 59960275 -90823278 + L2 LINE L2 3113 3312 -1 302 247 13 13 chr11 59960706 59960783 -90822770 - MIR SINE MIR -179 83 7 220 299 26 13 chr11 59961404 59961481 -90822072 + MIR SINE MIR 65 142 -120 2184 106 9 37 chr11 59961524 59961845 -90821708 + AluSx SINE Alu 1 312 0 230 303 192 0 chr11 59962666 59962765 -90820788 - L2 LINE L2 -11 3261 3144 2629 110 25 108 chr11 59963210 59963683 -90819870 - MER57B LTR ERV1 0 434 1 33 0 0 0 chr11 59963962 59963995 -90819558 + AT_rich Low_complexity Low_complexity 1 33 0 226 159 23 0 chr11 59964902 59964946 -90818607 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 315 284 99 27 chr11 59965163 59965371 -90818182 - L1ME LINE L1 -304 5866 5616 1012 167 44 0 chr11 59965371 59965551 -90818002 + MER5A DNA MER1_type 2 189 0 315 284 99 27 chr11 59965551 59965667 -90817886 - L1ME LINE L1 -554 5616 5510 363 299 185 27 chr11 59965722 59966127 -90817426 - L1ME LINE L1 -747 5399 4931 1321 290 99 57 chr11 59966210 59967215 -90816338 - L1ME LINE L1 -2848 3298 2251 3685 135 18 50 chr11 59967216 59967730 -90815823 - L1PA16 LINE L1 -9 6157 5671 2040 109 28 11 chr11 59967730 59968014 -90815539 - AluSx SINE Alu -23 289 1 3685 135 18 50 chr11 59968014 59968212 -90815341 - L1PA16 LINE L1 -495 5671 5468 259 81 0 0 chr11 59968212 59968249 -90815304 - MADE1 DNA Mariner -42 38 2 240 182 0 0 chr11 59968253 59968297 -90815256 - L1PA16 LINE L1 -693 5470 5427 1464 192 66 19 chr11 59968311 59968611 -90814942 - AluJo SINE Alu 0 313 1 4514 205 32 25 chr11 59968611 59968732 -90814821 - L1PA16 LINE L1 -726 5440 5321 2275 83 7 0 chr11 59968732 59969022 -90814531 - AluSg1 SINE Alu -17 292 1 4514 205 32 25 chr11 59969022 59969538 -90814015 - L1PA16 LINE L1 -845 5321 4810 2285 125 122 8 chr11 59969538 59969922 -90813631 + MSTA LTR MaLR 1 428 0 4514 205 32 25 chr11 59969922 59970312 -90813241 - L1PA16 LINE L1 -1356 4810 4390 198 0 0 0 chr11 59970312 59970334 -90813219 + (TG)n Simple_repeat Simple_repeat 1 22 0 4514 205 32 25 chr11 59970334 59970602 -90812951 - L1PA16 LINE L1 -1776 4390 4125 456 256 105 85 chr11 59970603 59970908 -90812645 - L1MEc LINE L1 -3993 2403 2093 7029 28 1 0 chr11 59971100 59972041 -90811512 - L1PA3 LINE L1 -39 6116 5175 276 143 0 0 chr11 59972041 59972065 -90811488 + (T)n Simple_repeat Simple_repeat 1 24 -25 7844 11 0 0 chr11 59972065 59973041 -90810512 - L1PA2 LINE L1 0 6155 5175 276 143 0 0 chr11 59973041 59973065 -90810488 + (T)n Simple_repeat Simple_repeat 23 49 0 18002 27 2 1 chr11 59973065 59975974 -90807579 - L1PA2 LINE L1 0 6155 3239 1722 109 58 68 chr11 59975993 59976287 -90807266 - AluSg SINE Alu -19 291 1 604 123 0 28 chr11 59976287 59976393 -90807160 - L1MA5 LINE L1 -9 6291 6189 1815 134 3 41 chr11 59976790 59977082 -90806471 - AluSg SINE Alu -29 281 1 2371 101 0 3 chr11 59977788 59978094 -90805459 - AluSq SINE Alu -8 305 1 1096 187 28 5 chr11 59978631 59978845 -90804708 + MER20 DNA MER1_type 1 219 0 408 286 52 104 chr11 59979037 59979140 -90804413 - MIR SINE MIR -7 255 148 2279 115 0 3 chr11 59979140 59979445 -90804108 + AluSx SINE Alu 1 304 -8 408 286 52 104 chr11 59979445 59979464 -90804089 - MIR SINE MIR -114 148 130 2080 123 66 0 chr11 59979464 59979798 -90803755 - MER46B DNA MER2_type -4 232 2 408 286 52 104 chr11 59979798 59979905 -90803648 - MIR SINE MIR -132 130 37 201 367 122 0 chr11 59979895 59979985 -90803568 + L2 LINE L2 3134 3234 -38 * 236 340 0 19 chr11 59980007 59980113 -90803440 + GA-rich Low_complexity Low_complexity 1 104 0 297 317 65 8 chr11 59980676 59980799 -90802754 - L2 LINE L2 -2 3270 3141 7009 35 3 0 chr11 59981552 59982444 -90801109 + L1P LINE L1 4175 5069 -1077 418 245 183 12 chr11 59984229 59984427 -90799126 + MIR SINE MIR 3 244 -18 324 253 36 0 chr11 59984438 59984521 -90799032 - MIR3 SINE MIR -39 169 84 834 229 11 56 chr11 59984522 59984767 -90798786 + MIR SINE MIR 26 257 -5 1952 135 3 0 chr11 59985385 59985701 -90797852 + AluSx SINE Alu 1 317 0 2023 78 0 49 chr11 59986644 59986928 -90796625 + AluY SINE Alu 1 270 -41 1983 159 10 0 chr11 59987379 59987688 -90795865 + AluSx SINE Alu 1 312 0 396 338 45 7 chr11 59987826 59987980 -90795573 - MIR SINE MIR -80 182 23 571 110 184 9 chr11 59988031 59988140 -90795413 - MER96 DNA MER1_type? 0 175 48 1605 198 17 14 chr11 59988174 59988533 -90795020 + MLT2D LTR ERVL 1 360 -54 276 130 0 0 chr11 59988533 59988579 -90794974 + (TAGG)n Simple_repeat Simple_repeat 2 47 0 332 269 43 11 chr11 59988739 59988832 -90794721 + MIR SINE MIR 10 105 -157 1266 151 0 0 chr11 59988838 59989056 -90794497 - L1MA4 LINE L1 -4 6296 6079 682 147 0 15 chr11 59989377 59989513 -90794040 + (TCC)n Simple_repeat Simple_repeat 2 135 0 183 100 0 0 chr11 59989511 59989541 -90794012 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 181 185 76 109 chr11 59989772 59989864 -90793689 - MIR SINE MIR -103 159 71 335 252 102 24 chr11 59990163 59990290 -90793263 - L3 LINE CR1 -72 1505 1369 301 371 91 0 chr11 59990354 59990486 -90793067 - L3 LINE CR1 -356 1221 1078 351 323 16 0 chr11 59990545 59990669 -90792884 - L2 LINE L2 -8 3264 3139 595 299 100 27 chr11 59990720 59991245 -90792308 + L1ME LINE L1 4981 5577 -544 238 253 32 105 chr11 59992207 59992302 -90791251 + MIR SINE MIR 68 155 -107 782 223 5 36 chr11 59992420 59992640 -90790913 + L1MB4 LINE L1 4898 5110 -1036 2548 175 18 0 chr11 59992640 59993098 -90790455 - Tigger3b DNA MER2_type -764 467 2 322 291 35 28 chr11 59993138 59993279 -90790274 - AluJb SINE Alu -160 142 1 4286 162 23 11 chr11 59993279 59994117 -90789436 + L1MB4 LINE L1 5303 6150 -30 274 309 107 0 chr11 59994201 59994285 -90789268 - L2 LINE L2 -25 3247 3155 211 161 0 89 chr11 59994276 59994332 -90789221 + L2 LINE L2 3263 3313 0 * 368 307 196 17 chr11 59996545 59996919 -90786634 + L2 LINE L2 2636 3072 -200 25 0 0 0 chr11 59996985 59997010 -90786543 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr11 59999132 59999156 -90784397 + AT_rich Low_complexity Low_complexity 1 24 0 441 18 0 0 chr11 59999173 59999228 -90784325 - L1PA4 LINE L1 -337 5818 5764 2847 30 0 0 chr11 59999228 59999561 -90783992 + L1PA4 LINE L1 5819 6152 -3 191 275 36 142 chr11 59999640 59999715 -90783838 - MIR SINE MIR -50 212 131 1957 102 7 7 chr11 59999715 60000000 -90783553 - L1PA10 LINE L1 0 6168 5884 191 275 36 142 chr11 60000000 60000115 -90783438 - MIR SINE MIR -131 131 42 310 312 32 0 chr11 60000263 60000356 -90783197 + MIR SINE MIR 87 182 -80 533 272 114 60 chr11 60001232 60001530 -90782023 - L2 LINE L2 0 3313 3000 384 291 64 7 chr11 60001780 60001921 -90781632 + MIR SINE MIR 3 151 -111 9004 32 0 2 chr11 60001928 60004308 -90779245 + L1PA4 LINE L1 3708 6154 -1 228 133 0 0 chr11 60004311 60004356 -90779197 + L1PA13 LINE L1 6119 6163 0 1554 99 92 0 chr11 60004660 60004944 -90778609 + L1MA7 LINE L1 5980 6289 -2 608 338 59 4 chr11 60005701 60005938 -90777615 - MIR SINE MIR -2 260 11 267 250 0 95 chr11 60007916 60008000 -90775553 - L2 LINE L2 -6 3266 3191 424 290 99 41 chr11 60008395 60008611 -90774942 + MIR SINE MIR 16 233 -29 364 273 10 10 chr11 60008711 60008810 -90774743 - MIR SINE MIR -118 144 46 296 275 38 46 chr11 60009135 60009266 -90774287 - MIR SINE MIR -62 146 17 332 291 0 58 chr11 60009958 60010061 -90773492 - MIR SINE MIR -71 191 95 243 61 0 0 chr11 60010343 60010376 -90773177 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 909 228 11 0 chr11 60011101 60011290 -90772263 - MIR SINE MIR -66 196 6 226 333 14 0 chr11 60011510 60011582 -90771971 + MIR SINE MIR 156 228 -34 237 103 26 0 chr11 60011582 60011621 -90771932 + MADE1 DNA Mariner 1 40 -40 211 238 16 0 chr11 60012043 60012106 -90771447 + (TATAA)n Simple_repeat Simple_repeat 1 64 0 393 312 98 73 chr11 60012697 60012774 -90770779 - L1ME LINE L1 -433 5688 5614 1508 136 58 101 chr11 60012774 60013082 -90770471 - AluSx SINE Alu -17 295 1 393 312 98 73 chr11 60013082 60013402 -90770151 - L1ME LINE L1 -507 5614 5281 939 275 91 74 chr11 60013423 60013512 -90770041 - L2 LINE L2 -2 3311 3225 1201 81 0 0 chr11 60013512 60013672 -90769881 + L1PA8 LINE L1 6010 6169 -3 939 275 91 74 chr11 60013672 60014309 -90769244 - L2 LINE L2 -88 3225 2567 342 0 0 0 chr11 60014317 60014355 -90769198 + (CA)n Simple_repeat Simple_repeat 2 39 0 426 281 0 0 chr11 60014477 60014591 -90768962 + MLT1I LTR MaLR 292 405 -4 285 25 0 25 chr11 60014895 60014935 -90768618 - L1M1 LINE L1 -521 5781 5743 245 329 59 33 chr11 60015042 60015346 -90768207 - L1ME LINE L1 -1163 4983 4672 27 49 0 0 chr11 60015381 60015422 -90768131 + AT_rich Low_complexity Low_complexity 1 41 0 1395 261 41 24 chr11 60015884 60016301 -90767252 + LTR16A1 LTR ERVL 32 455 -2 2056 112 4 0 chr11 60016342 60016619 -90766934 + AluSx SINE Alu 1 278 -34 219 346 37 12 chr11 60017631 60017712 -90765841 + MIR3 SINE MIR 7 89 -119 638 338 55 5 chr11 60018540 60018759 -90764794 + MIR SINE MIR 21 250 -12 593 350 37 4 chr11 60018779 60019022 -90764531 + MIR SINE MIR 2 252 -10 492 339 33 16 chr11 60019881 60020064 -90763489 + MIR SINE MIR 20 205 -57 310 305 133 8 chr11 60020435 60020563 -90762990 + MIR SINE MIR 85 228 -34 21 57 0 0 chr11 60020739 60020774 -90762779 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr11 60020869 60020893 -90762660 + AT_rich Low_complexity Low_complexity 1 24 0 224 308 60 60 chr11 60021074 60021207 -90762346 - MIR3 SINE MIR -4 204 72 293 300 66 35 chr11 60021562 60021753 -90761800 + MIR SINE MIR 19 209 -53 267 31 0 0 chr11 60022756 60022788 -90760765 + (TA)n Simple_repeat Simple_repeat 2 33 0 273 208 78 0 chr11 60022921 60022998 -90760555 - MIR SINE MIR 0 262 180 830 112 8 8 chr11 60022998 60023132 -90760421 + L1PB1 LINE L1 6017 6150 -1 290 237 87 11 chr11 60023288 60023383 -90760170 - MIR SINE MIR -49 159 52 384 331 208 4 chr11 60023623 60023892 -90759661 + L3 LINE CR1 1251 1574 -3 198 304 98 43 chr11 60026016 60026108 -90757445 + L2 LINE L2 3180 3276 -37 301 326 163 0 chr11 60026249 60026390 -90757163 + MIR SINE MIR 34 197 -65 229 292 0 0 chr11 60026822 60026870 -90756683 + MLT1K LTR MaLR 201 248 -340 463 271 163 17 chr11 60027027 60027315 -90756238 + L1ME LINE L1 5408 5737 -433 599 261 31 81 chr11 60027330 60027552 -90756001 + MLT1J LTR MaLR 244 454 -57 471 186 41 0 chr11 60028067 60028164 -90755389 - L1MA8 LINE L1 -1 6290 6190 295 172 17 0 chr11 60028328 60028386 -90755167 + L1MA8 LINE L1 6188 6246 -45 326 62 21 0 chr11 60028404 60028452 -90755101 - L1MA8 LINE L1 -132 6159 6111 241 161 32 81 chr11 60028774 60028836 -90754717 + MIR SINE MIR 81 139 -69 292 342 87 20 chr11 60029779 60029928 -90753625 + MIR SINE MIR 76 234 -28 223 274 178 0 chr11 60030298 60030371 -90753182 + MIR3 SINE MIR 74 159 -49 182 214 71 0 chr11 60030570 60030612 -90752941 + L3 LINE CR1 1525 1569 -8 2145 123 0 17 chr11 60031284 60031586 -90751967 - AluSx SINE Alu -15 297 1 356 315 136 16 chr11 60032955 60033139 -90750414 + MIR SINE MIR 51 256 -6 236 289 0 53 chr11 60033241 60033317 -90750236 + L3 LINE CR1 1180 1251 -326 267 250 80 10 chr11 60033468 60033568 -90749985 - MER91C DNA MER1_type -32 108 2 4992 188 33 25 chr11 60035795 60035870 -90747683 + L1MA10 LINE L1 4449 4522 -1812 4674 67 2 3 chr11 60035870 60036481 -90747072 + L1PA6 LINE L1 5545 6154 0 4992 188 33 25 chr11 60036481 60038260 -90745293 + L1MA10 LINE L1 4522 6321 -13 239 331 52 22 chr11 60038456 60038592 -90744961 + MIR SINE MIR 49 188 -74 259 288 97 8 chr11 60038617 60038774 -90744779 - MLT1J1 LTR MaLR 0 409 232 5325 209 77 30 chr11 60039608 60040175 -90743378 + L1M2 LINE L1 1348 1887 -4961 2603 125 3 3 chr11 60040175 60040550 -90743003 + THE1C LTR MaLR 1 375 0 5325 209 77 30 chr11 60040550 60041490 -90742063 + L1M2 LINE L1 1887 2924 -3924 2260 140 18 18 chr11 60041495 60041547 -90742006 + L1P5 LINE L1 4995 5046 -1108 2280 98 3 0 chr11 60041547 60041843 -90741710 + AluSp SINE Alu 1 297 -16 2260 140 18 18 chr11 60041843 60042400 -90741153 + L1P5 LINE L1 5046 5599 -555 1997 146 16 32 chr11 60042470 60042847 -90740706 - L1MA4 LINE L1 -201 6099 5729 670 305 48 55 chr11 60042832 60043327 -90740226 + L1ME2 LINE L1 1593 2084 -4312 * 586 175 130 32 chr11 60043375 60043529 -90740024 + MLT1H LTR MaLR 152 320 -229 2296 256 53 37 chr11 60043669 60044891 -90738662 + L1ME2 LINE L1 2039 3237 -2978 888 48 0 0 chr11 60044934 60045064 -90738489 - AluY SINE Alu 0 307 178 456 226 89 123 chr11 60045146 60045504 -90738049 + L1ME2 LINE L1 3361 3706 -2509 2223 239 41 18 chr11 60045539 60046149 -90737404 - L1ME1 LINE L1 -64 6102 5479 1901 207 75 85 chr11 60046148 60046452 -90737101 + L1ME2 LINE L1 5617 5913 -320 * 1525 149 9 98 chr11 60046452 60046590 -90736963 + AluJb SINE Alu 1 97 -215 2097 137 0 0 chr11 60046590 60046890 -90736663 + AluSx SINE Alu 1 300 -12 1525 149 9 98 chr11 60046890 60047067 -90736486 + AluJb SINE Alu 97 288 -24 1901 207 75 85 chr11 60047067 60047376 -90736177 + L1ME2 LINE L1 5913 6224 -9 231 218 0 0 chr11 60047442 60047497 -90736056 + GA-rich Low_complexity Low_complexity 2 56 0 2346 128 13 13 chr11 60047797 60048172 -90735381 + THE1C LTR MaLR 1 375 0 4901 164 16 7 chr11 60049158 60049804 -90733749 - L1PB4 LINE L1 -12 6144 5485 2084 108 0 0 chr11 60049804 60050081 -90733472 - AluY SINE Alu 0 311 35 4901 164 16 7 chr11 60050081 60050349 -90733204 - L1PB4 LINE L1 -671 5485 5221 594 246 86 36 chr11 60050825 60051288 -90732265 - MER114 LTR ERV -26 622 114 22296 94 8 13 chr11 60051290 60054416 -90729137 + L1PA8 LINE L1 1985 5126 -1046 2249 113 0 3 chr11 60054416 60054718 -90728835 + AluSq SINE Alu 1 301 -12 22296 94 8 13 chr11 60054718 60055453 -90728100 + L1PA8 LINE L1 5126 5826 -346 1365 122 194 12 chr11 60055453 60055700 -90727853 + AluSg1 SINE Alu 1 292 -17 22296 94 8 13 chr11 60055700 60056038 -90727515 + L1PA8 LINE L1 5826 6164 -8 525 221 68 23 chr11 60056148 60056352 -90727201 + L1ME3A LINE L1 5839 6065 -99 5219 154 29 16 chr11 60056442 60057523 -90726030 - L1MA7 LINE L1 -1 6290 5200 689 301 224 0 chr11 60057519 60057805 -90725748 - L1M3a LINE L1 -5605 350 1 * 1817 178 43 35 chr11 60057940 60058362 -90725191 + L1MA10 LINE L1 5903 6327 -7 24 0 0 0 chr11 60058442 60058466 -90725087 + AT_rich Low_complexity Low_complexity 1 24 0 3759 183 0 0 chr11 60058542 60059226 -90724327 - L1 LINE L1 -1897 4249 3566 3799 211 23 6 chr11 60059233 60060136 -90723417 + L1 LINE L1 4241 5159 -987 6117 60 75 20 chr11 60060237 60061650 -90721903 + L1PA8 LINE L1 4706 6170 -2 1077 135 0 0 chr11 60063211 60063381 -90720172 - L1PA14 LINE L1 -2 6159 5990 2011 125 33 10 chr11 60063779 60064082 -90719471 - AluSx SINE Alu -2 310 1 2059 117 0 49 chr11 60064972 60065298 -90718255 + AluSx SINE Alu 1 310 -2 231 61 0 0 chr11 60065375 60065408 -90718145 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 1699 184 14 0 chr11 60065408 60065696 -90717857 - AluJb SINE Alu -20 292 1 218 308 39 29 chr11 60066624 60066728 -90716825 - MIR SINE MIR -72 190 86 2054 127 13 35 chr11 60066915 60067231 -90716322 - AluSx SINE Alu -3 309 1 334 284 116 16 chr11 60067462 60067612 -90715941 + MIR SINE MIR 36 149 -59 436 363 0 0 chr11 60067809 60067944 -90715609 - MIR3 SINE MIR -28 180 46 2257 92 0 16 chr11 60067952 60068255 -90715298 + AluY SINE Alu 1 298 -13 284 68 0 23 chr11 60069153 60069197 -90714356 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 325 347 32 8 chr11 60069420 60069544 -90714009 + MIR SINE MIR 17 143 -65 267 311 6 30 chr11 60069948 60070112 -90713441 + (TCTG)n Simple_repeat Simple_repeat 1 160 0 206 62 31 0 chr11 60070346 60070378 -90713175 + (TG)n Simple_repeat Simple_repeat 2 34 0 196 299 58 81 chr11 60070925 60071012 -90712541 + MIR3 SINE MIR 85 169 -39 351 180 0 0 chr11 60071853 60071914 -90711639 + MIR SINE MIR 180 240 -22 676 253 37 0 chr11 60071948 60072110 -90711443 - MIR SINE MIR -64 198 31 215 363 88 39 chr11 60072191 60072395 -90711158 - L2 LINE L2 -14 3258 3045 422 279 122 54 chr11 60073705 60073927 -90709626 + MIR SINE MIR 20 256 -6 754 155 0 0 chr11 60074548 60074664 -90708889 - AluSg/x SINE Alu -128 184 69 558 267 127 9 chr11 60075161 60075382 -90708171 - LTR33 LTR ERVL -273 248 2 2359 96 26 0 chr11 60075572 60075874 -90707679 - AluSx SINE Alu -2 310 1 394 306 108 5 chr11 60077230 60077416 -90706137 + MIR SINE MIR 2 206 -56 2147 127 27 0 chr11 60078001 60078300 -90705253 + AluSx SINE Alu 1 307 -5 1478 234 12 6 chr11 60078566 60078900 -90704653 - MER58B DNA MER1_type -1 340 5 280 159 16 79 chr11 60079011 60079074 -90704479 - MER63 DNA MER1_type -25 1035 977 490 186 49 0 chr11 60079077 60079179 -90704374 - MER63 DNA MER1_type -313 749 17 1283 170 84 64 chr11 60079262 60079474 -90704079 - MLT1A1 LTR MaLR 0 365 142 2136 135 0 3 chr11 60079474 60079771 -90703782 - AluJb SINE Alu -16 296 1 1283 170 84 64 chr11 60079771 60079916 -90703637 - MLT1A1 LTR MaLR -223 142 1 465 318 103 9 chr11 60080009 60080223 -90703330 - MIR SINE MIR 0 262 29 2013 125 37 3 chr11 60080341 60080636 -90702917 - AluSx SINE Alu -7 305 1 191 312 78 0 chr11 60080737 60080814 -90702739 - L2 LINE L2 -64 3249 3167 1344 154 0 34 chr11 60081136 60081403 -90702150 - L1MA9 LINE L1 -1 6311 6054 241 47 47 0 chr11 60081615 60081658 -90701895 + (TA)n Simple_repeat Simple_repeat 1 45 0 912 233 0 9 chr11 60081685 60081908 -90701645 - L1PA3 LINE L1 -9 6146 5926 6341 73 6 0 chr11 60082283 60083117 -90700436 + L1PA6 LINE L1 5303 6141 -13 4591 132 51 1 chr11 60083119 60083920 -90699633 + L1PA16 LINE L1 5315 6155 -11 960 265 45 64 chr11 60083956 60084478 -90699075 - MLT1H LTR MaLR -1 541 1 22 0 0 0 chr11 60084541 60084563 -90698990 + AT_rich Low_complexity Low_complexity 1 22 0 181 94 0 62 chr11 60085031 60085063 -90698490 + L3b LINE CR1 1543 1572 -11 1940 145 14 24 chr11 60085779 60086075 -90697478 - AluSx SINE Alu -19 293 1 226 250 78 69 chr11 60086817 60086933 -90696620 - L3 LINE CR1 -3 1574 1458 863 155 0 0 chr11 60087163 60087292 -90696261 + FLAM_C SINE Alu 1 129 -4 1131 214 54 80 chr11 60087397 60087770 -90695783 + MLT1E1 LTR MaLR 287 649 -5 238 254 0 0 chr11 60087784 60087797 -90695756 + MIR SINE MIR 177 189 -73 847 269 42 5 chr11 60087797 60088013 -90695540 - MER58A DNA MER1_type 0 224 1 238 254 0 0 chr11 60088013 60088062 -90695491 + MIR SINE MIR 188 239 -23 1793 203 3 3 chr11 60088164 60088509 -90695044 - MLT1A1 LTR MaLR 0 365 21 6586 100 75 20 chr11 60088587 60090306 -90693247 + L1PA8 LINE L1 4400 6165 -7 492 198 24 24 chr11 60090415 60090541 -90693012 + L1ME3A LINE L1 5839 5964 -206 4920 154 29 16 chr11 60090709 60091790 -90691763 - L1MA7 LINE L1 -1 6290 5200 595 301 224 0 chr11 60091786 60092072 -90691481 - L1M3a LINE L1 -5605 350 1 * 1692 178 43 35 chr11 60092207 60092629 -90690924 + L1MA10 LINE L1 5903 6327 -7 24 0 0 0 chr11 60092709 60092733 -90690820 + AT_rich Low_complexity Low_complexity 1 24 0 3550 183 0 0 chr11 60092809 60093493 -90690060 - L1 LINE L1 -1897 4249 3566 4249 202 24 5 chr11 60093521 60094569 -90688984 + L1 LINE L1 4265 5332 -814 2285 57 13 0 chr11 60094570 60094885 -90688668 + L1P LINE L1 4873 5191 -955 560 86 0 0 chr11 60094880 60094961 -90688592 + L1PA3 LINE L1 5970 6050 -105 * 397 301 138 32 chr11 60095097 60095409 -90688144 + L2 LINE L2 2430 2774 -540 242 354 79 14 chr11 60095515 60095730 -90687823 + L2 LINE L2 2944 3172 -141 412 216 32 49 chr11 60096256 60096330 -90687223 + L1 LINE L1 2253 2327 -3819 7107 44 32 1 chr11 60096330 60097200 -90686353 - MER11D LTR ERVK 0 897 1 412 216 32 49 chr11 60097200 60097310 -90686243 + L1 LINE L1 2327 2434 -3712 2081 167 30 10 chr11 60097454 60097916 -90685637 + Tigger7 DNA MER2_type 453 1004 -1483 799 189 34 0 chr11 60097922 60098070 -90685483 + Tigger7 DNA MER2_type 2435 2587 0 7928 142 13 2 chr11 60098674 60100047 -90683506 + L1P LINE L1 1658 3045 -3101 1745 234 96 16 chr11 60100635 60101187 -90682366 - MER90 LTR ERV1 -3 611 16 3825 176 60 13 chr11 60102758 60103777 -90679776 + L1MA8 LINE L1 5142 6205 -86 226 263 42 11 chr11 60104162 60104257 -90679296 + HAL1 LINE L1 2243 2340 -167 738 271 62 41 chr11 60104266 60104606 -90678947 + L1ME3A LINE L1 5815 6161 -9 21 0 0 0 chr11 60105249 60105270 -90678283 + AT_rich Low_complexity Low_complexity 1 21 0 291 28 0 0 chr11 60106260 60106296 -90677257 + (TG)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr11 60106581 60106602 -90676951 + AT_rich Low_complexity Low_complexity 1 21 0 230 286 0 0 chr11 60106744 60106800 -90676753 + L2 LINE L2 3217 3272 0 1614 284 50 17 chr11 60107012 60107862 -90675691 - L1M4 LINE L1 -2659 3487 2599 860 202 34 29 chr11 60107862 60108070 -90675483 + MER6B DNA MER2_type 1 209 -1 1614 284 50 17 chr11 60108070 60108202 -90675351 - L1M4 LINE L1 -3547 2599 2473 398 208 0 85 chr11 60108226 60108356 -90675197 - L1M4 LINE L1 -3852 2294 2176 2391 166 8 19 chr11 60109355 60109824 -90673729 - L1MA5 LINE L1 -360 5940 5477 1609 238 32 51 chr11 60109977 60110721 -90672832 - L1M4 LINE L1 -2849 3297 2568 3514 195 17 34 chr11 60110722 60111567 -90671986 - L1MA10 LINE L1 -3 6331 5502 245 28 0 28 chr11 60111744 60111780 -90671773 - L1PBa LINE L1 -4143 2720 2686 4529 134 58 3 chr11 60111813 60112561 -90670992 - THE1B-int LTR MaLR -789 791 3 2151 120 0 6 chr11 60112564 60112890 -90670663 - THE1B LTR MaLR 0 364 41 7762 11 9 0 chr11 60113640 60115192 -90668361 + L1PA2 LINE L1 5175 6155 0 7048 38 20 1 chr11 60115192 60116139 -90667414 + L1PA3 LINE L1 5175 6137 -18 4889 24 26 0 chr11 60115271 60116171 -90667382 + L1PA3 LINE L1 5254 6169 0 541 167 25 17 chr11 60116272 60116392 -90667161 - L1MA4 LINE L1 -222 6078 5958 1916 178 40 68 chr11 60119215 60119624 -90663929 - L1MA10 LINE L1 0 6334 5942 498 90 26 0 chr11 60119624 60119702 -90663851 - MADE1 DNA Mariner 0 80 1 1916 178 40 68 chr11 60119702 60119819 -90663734 - L1MA10 LINE L1 -392 5942 5823 207 0 0 0 chr11 60120836 60120859 -90662694 + (T)n Simple_repeat Simple_repeat 1 23 0 1775 125 14 42 chr11 60123101 60123390 -90660163 + AluJb SINE Alu 2 282 -30 342 67 0 0 chr11 60123390 60123435 -90660118 + (TC)n Simple_repeat Simple_repeat 2 46 0 520 61 70 0 chr11 60123438 60123553 -90660000 + (TA)n Simple_repeat Simple_repeat 1 123 0 209 329 14 0 chr11 60123694 60123767 -90659786 + MIR SINE MIR 60 133 -75 258 220 60 0 chr11 60124680 60124730 -90658823 - L2 LINE L2 -62 3210 3158 1419 137 11 1 chr11 60125050 60125303 -90658250 + L1M4 LINE L1 5568 5824 -354 583 289 45 0 chr11 60125735 60125936 -90657617 + MARNA DNA Mariner 327 536 -50 314 61 20 0 chr11 60126166 60126215 -90657338 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 1949 72 4 4 chr11 60126228 60126479 -90657074 - AluSc SINE Alu -58 251 1 303 329 82 24 chr11 60126735 60126905 -90656648 - MIR SINE MIR -58 204 25 727 281 148 15 chr11 60127007 60127608 -90655945 - L1ME4a LINE L1 -37 6084 5404 2512 57 3 0 chr11 60127926 60128224 -90655329 - AluSc SINE Alu -9 300 2 426 262 48 35 chr11 60128380 60128525 -90655028 - MIR SINE MIR -17 245 99 922 276 53 0 chr11 60128528 60128756 -90654797 + MIR SINE MIR 1 240 -22 22 99 0 0 chr11 60129564 60129635 -90653918 + AT_rich Low_complexity Low_complexity 1 71 0 23 68 0 0 chr11 60130466 60130510 -90653043 + AT_rich Low_complexity Low_complexity 1 44 0 24 32 0 0 chr11 60130567 60130598 -90652955 + AT_rich Low_complexity Low_complexity 1 31 0 818 262 68 27 chr11 60131260 60131596 -90651957 + L1ME3A LINE L1 5808 6157 -13 2409 24 3 14 chr11 60131955 60132243 -90651310 + AluYa5 SINE Alu 1 285 -26 1048 213 102 100 chr11 60132363 60132878 -90650675 + MER66A LTR ERV1 97 448 -30 234 128 0 0 chr11 60133170 60133209 -90650344 + (GA)n Simple_repeat Simple_repeat 2 40 0 431 304 62 33 chr11 60133263 60133569 -90649984 + L1MB4 LINE L1 5738 6052 -128 * 1115 227 121 9 chr11 60133297 60133645 -90649908 + L1ME2 LINE L1 5770 6156 -8 207 0 0 0 chr11 60134466 60134489 -90649064 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 2260 78 0 0 chr11 60134583 60134899 -90648654 + AluY SINE Alu 1 316 0 393 58 0 0 chr11 60135287 60135339 -90648214 + (GA)n Simple_repeat Simple_repeat 1 52 0 3188 221 39 9 chr11 60135574 60136340 -90647213 + MER99 DNA DNA 30 818 -10 389 253 8 11 chr11 60136932 60137040 -90646513 + L1MA8 LINE L1 5665 5777 -514 2378 161 29 0 chr11 60137041 60137495 -90646058 + L1MA8 LINE L1 5825 6291 0 3485 168 84 18 chr11 60137869 60138525 -90645028 + MER44D DNA MER2_type 7 705 0 1864 142 52 30 chr11 60138536 60138903 -90644650 - THE1C LTR MaLR 0 375 1 361 211 150 14 chr11 60139172 60139319 -90644234 - L1ME4a LINE L1 -5 6116 5950 2198 103 3 0 chr11 60139644 60139945 -90643608 - AluSg SINE Alu -4 306 5 186 255 64 0 chr11 60140461 60140508 -90643045 + L2 LINE L2 3205 3254 -18 301 326 21 43 chr11 60141183 60141324 -90642229 - L1M2 LINE L1 -5744 1105 968 1975 144 0 10 chr11 60142487 60142778 -90640775 + AluSx SINE Alu 1 288 -24 35 0 0 0 chr11 60142778 60142813 -90640740 + AT_rich Low_complexity Low_complexity 1 35 0 395 311 101 41 chr11 60142820 60143158 -90640395 + L1 LINE L1 2110 2467 -3679 313 296 81 24 chr11 60143174 60143421 -90640132 + L1 LINE L1 3679 3939 -2207 26 30 0 0 chr11 60143425 60143458 -90640095 + AT_rich Low_complexity Low_complexity 1 33 0 325 305 155 31 chr11 60143507 60143861 -90639692 + L1 LINE L1 4121 4518 -1628 26 64 0 0 chr11 60143942 60143989 -90639564 + AT_rich Low_complexity Low_complexity 1 47 0 1499 173 24 3 chr11 60143999 60144329 -90639224 - L1MA4 LINE L1 -6 6294 5958 180 111 0 0 chr11 60146670 60146697 -90636856 + (CAA)n Simple_repeat Simple_repeat 2 28 0 4716 169 40 9 chr11 60148513 60150195 -90633358 + L1MA6 LINE L1 4309 6023 -277 551 93 0 0 chr11 60150195 60150270 -90633283 - THE1B LTR MaLR -289 75 1 250 320 0 29 chr11 60150805 60150908 -90632645 + LTR16C LTR ERVL 388 487 -4 210 179 71 0 chr11 60151012 60151068 -90632485 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 5619 167 44 7 chr11 60151125 60153067 -90630486 - L1MA6 LINE L1 -1 6299 4309 180 111 0 0 chr11 60154900 60154927 -90628626 + (TTG)n Simple_repeat Simple_repeat 2 28 0 960 157 20 0 chr11 60155349 60155546 -90628007 + L1MA4 LINE L1 6094 6294 -6 29 47 0 0 chr11 60155557 60155600 -90627953 + AT_rich Low_complexity Low_complexity 1 43 0 335 256 116 0 chr11 60155824 60155953 -90627600 + MER103 DNA DNA 3 146 -20 305 316 68 26 chr11 60156538 60156655 -90626898 + MIR3 SINE MIR 9 130 -78 811 255 109 97 chr11 60156786 60156989 -90626564 + MLT1G1 LTR MaLR 1 200 -395 1301 216 60 23 chr11 60156989 60157341 -90626212 + MLT1A1 LTR MaLR 1 365 0 811 255 109 97 chr11 60157341 60157725 -90625828 + MLT1G1 LTR MaLR 200 595 0 227 371 97 0 chr11 60158332 60158456 -90625097 - L2 LINE L2 -3 3269 3134 649 317 88 32 chr11 60158832 60159276 -90624277 - L2 LINE L2 -86 3227 2766 258 331 48 36 chr11 60159291 60159457 -90624096 - L2 LINE L2 -1101 2213 2046 1432 249 58 35 chr11 60159836 60160357 -90623196 + L1M4 LINE L1 3772 4304 -1842 3403 195 69 14 chr11 60160360 60161609 -90621944 + L1MA8 LINE L1 4774 6090 -201 235 214 0 0 chr11 60161595 60161651 -90621902 + L1MA9 LINE L1 6174 6229 -83 * 351 0 0 0 chr11 60161694 60161733 -90621820 + (TA)n Simple_repeat Simple_repeat 1 39 0 4380 149 61 17 chr11 60161778 60162125 -90621428 + L1MB1 LINE L1 5321 5651 -517 213 119 0 0 chr11 60162125 60162167 -90621386 + (TA)n Simple_repeat Simple_repeat 2 43 0 * 261 0 0 0 chr11 60162166 60162195 -90621358 + (TG)n Simple_repeat Simple_repeat 2 30 0 4380 149 61 17 chr11 60162167 60162290 -90621263 + L1MB1 LINE L1 5651 5767 -401 1838 131 28 72 chr11 60162290 60162515 -90621038 - MER2 DNA MER2_type 0 344 139 2917 9 0 0 chr11 60162515 60162832 -90620721 + AluYb8 SINE Alu 1 317 -1 1838 131 28 72 chr11 60162832 60162966 -90620587 - MER2 DNA MER2_type -205 139 1 4380 149 61 17 chr11 60162966 60163329 -90620224 + L1MB1 LINE L1 5767 6162 -6 2522 212 60 44 chr11 60163335 60164020 -90619533 + L1ME1 LINE L1 5467 6162 -4 599 260 19 56 chr11 60164589 60164844 -90618709 + MIR SINE MIR 4 246 -16 200 206 265 0 chr11 60165114 60165182 -90618371 + MIR SINE MIR 171 256 -6 196 307 208 0 chr11 60165178 60165279 -90618274 - MIR SINE MIR -121 141 20 * 598 286 32 28 chr11 60165827 60166044 -90617509 + MIR SINE MIR 34 251 -11 285 109 0 0 chr11 60166051 60166097 -90617456 + (TTA)n Simple_repeat Simple_repeat 2 47 0 285 260 110 110 chr11 60166228 60166374 -90617179 - L2 LINE L2 -5 3267 3122 881 266 62 16 chr11 60166427 60166735 -90616818 - L2 LINE L2 0 3313 2992 437 296 44 38 chr11 60167942 60168101 -90615452 + MIR SINE MIR 29 188 -74 324 209 93 0 chr11 60168817 60168903 -90614650 + MIR SINE MIR 42 135 -73 421 289 13 46 chr11 60169687 60169839 -90613714 - MER5A DNA MER1_type 0 189 43 666 256 42 0 chr11 60170179 60170347 -90613206 + MER5B DNA MER1_type 1 175 -3 391 211 6 117 chr11 60170431 60170528 -90613025 - MER103 DNA DNA -14 152 81 2037 78 17 27 chr11 60170528 60170822 -90612731 + L1PA13 LINE L1 5871 6161 -2 391 211 6 117 chr11 60170822 60170895 -90612658 - MER103 DNA DNA -85 81 1 411 170 0 40 chr11 60171361 60171461 -90612092 + L1MA7 LINE L1 6189 6284 -7 619 93 75 0 chr11 60171776 60171937 -90611616 + (TAGA)n Simple_repeat Simple_repeat 3 175 0 671 287 32 11 chr11 60171937 60172125 -90611428 - MIR SINE MIR -69 193 2 279 295 57 33 chr11 60172764 60172886 -90610667 - MIR3 SINE MIR -11 197 73 282 272 98 33 chr11 60173149 60173241 -90610312 - MIR3 SINE MIR -15 193 96 362 318 56 95 chr11 60174823 60175213 -90608340 + L2 LINE L2 2846 3220 -52 423 137 0 0 chr11 60175234 60175307 -90608246 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 180 0 0 0 chr11 60176134 60176154 -90607399 + (T)n Simple_repeat Simple_repeat 1 20 0 384 358 57 5 chr11 60177324 60177517 -90606036 - L2 LINE L2 -614 2700 2498 1066 274 167 25 chr11 60177532 60178072 -90605481 + MLT1G1 LTR MaLR 14 584 -6 273 315 0 0 chr11 60178075 60178148 -90605405 - L2 LINE L2 -814 2500 2428 1159 180 0 57 chr11 60178151 60178401 -90605152 - AluJo SINE Alu 0 321 84 186 264 19 0 chr11 60178409 60178462 -90605091 - L2 LINE L2 -936 2378 2325 229 324 0 0 chr11 60178464 60178535 -90605018 + L2 LINE L2 2856 2926 -346 588 64 0 0 chr11 60178691 60178769 -90604784 - L1P LINE L1 -1964 4182 4105 1566 35 10 5 chr11 60178769 60178968 -90604585 + L1PA6 LINE L1 5953 6154 0 1977 121 43 0 chr11 60179262 60179544 -90604009 - AluSx SINE Alu -18 294 1 202 219 0 0 chr11 60180390 60180431 -90603122 - MIR SINE MIR 0 262 222 256 299 112 15 chr11 60180715 60180849 -90602704 - L2 LINE L2 -106 3207 3061 199 271 100 43 chr11 60180848 60180918 -90602635 + L2 LINE L2 2983 3056 -216 * 187 286 12 71 chr11 60182007 60182091 -90601462 - MIR SINE MIR -71 137 59 1382 249 103 19 chr11 60182508 60182926 -90600627 + L2 LINE L2 2859 3311 -2 287 383 4 79 chr11 60183182 60183422 -90600131 + L2 LINE L2 3046 3267 -5 247 293 17 26 chr11 60184242 60184358 -90599195 - L1ME LINE L1 -382 5739 5625 1142 198 12 31 chr11 60184580 60184837 -90598716 - L1PB4 LINE L1 -4 6152 5901 302 167 0 0 chr11 60184837 60184891 -90598662 + L1PB4 LINE L1 5840 5893 -263 23 0 0 0 chr11 60184892 60184915 -90598638 + AT_rich Low_complexity Low_complexity 1 23 0 1426 206 62 65 chr11 60185207 60185708 -90597845 - MLT1H LTR MaLR 0 542 41 647 277 138 58 chr11 60186762 60187210 -90596343 - HAL1 LINE L1 -888 1619 1136 2156 133 39 28 chr11 60188246 60188606 -90594947 + THE1B LTR MaLR 1 364 0 182 329 41 0 chr11 60189902 60189975 -90593578 + MIR SINE MIR 184 259 -3 516 298 41 23 chr11 60190208 60190379 -90593174 - MIR SINE MIR -71 191 18 1838 87 45 10 chr11 60190398 60190686 -90592867 - L1MA3 LINE L1 -10 6295 5998 214 71 24 24 chr11 60190830 60190872 -90592681 + (TTTTA)n Simple_repeat Simple_repeat 1 42 0 3456 35 0 0 chr11 60190872 60191298 -90592255 - L1PA4 LINE L1 -24 6131 5706 492 272 13 0 chr11 60192193 60192351 -90591202 - MER103 DNA DNA -4 162 3 2112 138 0 0 chr11 60192536 60192840 -90590713 + AluSx SINE Alu 1 304 -8 723 272 11 0 chr11 60195041 60195221 -90588332 + MIR SINE MIR 43 224 -38 346 325 17 62 chr11 60195563 60195803 -90587750 - L2 LINE L2 -195 3077 2849 485 238 44 12 chr11 60195920 60196080 -90587473 + L1MA4 LINE L1 6104 6268 -32 349 361 5 37 chr11 60196089 60196280 -90587273 - L2 LINE L2 -555 2759 2575 273 307 119 23 chr11 60196465 60196641 -90586912 + MIR SINE MIR 50 242 -20 223 333 117 30 chr11 60196639 60196870 -90586683 + L2 LINE L2 2841 3091 -181 * 262 343 60 55 chr11 60197364 60197564 -90585989 + MIR SINE MIR 18 216 -46 336 296 63 14 chr11 60198469 60198611 -90584942 + MIR3 SINE MIR 49 197 -11 5354 164 22 8 chr11 60198636 60200439 -90583114 - L1MA4 LINE L1 -11 7708 5876 7538 185 26 29 chr11 60202149 60203151 -90580402 - L1MA4 LINE L1 -1679 5886 4888 342 0 0 0 chr11 60203151 60203189 -90580364 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 7538 185 26 29 chr11 60203189 60204037 -90579516 - L1MA4 LINE L1 -2677 4888 4040 2886 135 31 0 chr11 60204037 60204490 -90579063 + Charlie3 DNA MER1_type 1 467 -2243 810 151 8 0 chr11 60204490 60204616 -90578937 + Charlie3 DNA MER1_type 2576 2702 -8 1411 199 77 58 chr11 60204636 60205379 -90578174 - L1MA4 LINE L1 -3579 3986 3222 1599 214 0 3 chr11 60205379 60205674 -90577879 - AluJo SINE Alu -14 298 5 1411 199 77 58 chr11 60205674 60205783 -90577770 - L1MA4 LINE L1 -4343 3222 3117 1401 188 0 0 chr11 60205782 60206070 -90577483 + L1P LINE L1 4666 4953 -1193 * 2403 58 28 0 chr11 60206173 60206533 -90577020 - L1P LINE L1 -993 5153 4784 * 5929 166 16 55 chr11 60206521 60208146 -90575407 - L1M1 LINE L1 -743 5403 3931 311 284 21 11 chr11 60208148 60208243 -90575310 + L1MDa LINE L1 1774 1869 -4671 421 235 176 24 chr11 60208290 60208630 -90574923 + L1MDa LINE L1 2161 2552 -4169 791 301 103 8 chr11 60208652 60209157 -90574396 + L1MDa LINE L1 2595 3147 -3393 462 155 0 72 chr11 60209413 60209510 -90574043 - Tigger7 DNA MER2_type 0 2487 2398 * 1111 233 4 17 chr11 60209508 60209744 -90573809 - Tigger7 DNA MER2_type -2253 234 2 2089 115 0 14 chr11 60209989 60210313 -90573240 - AluSg SINE Alu 0 320 1 676 325 63 37 chr11 60210355 60210847 -90572706 + LTR33 LTR ERVL 1 505 -16 550 40 67 0 chr11 60212455 60212530 -90571023 + MADE1 DNA Mariner 1 80 0 423 290 93 32 chr11 60213392 60213614 -90569939 + MIR SINE MIR 25 262 0 191 295 89 62 chr11 60213620 60213732 -90569821 + L2 LINE L2 3197 3311 -2 580 130 139 0 chr11 60214062 60214177 -90569376 - L1MA7 LINE L1 0 6291 6161 25 0 0 0 chr11 60214221 60214246 -90569307 + AT_rich Low_complexity Low_complexity 1 25 0 359 341 138 15 chr11 60214363 60214511 -90569042 - L3 LINE CR1 -124 1453 1325 2042 106 37 4 chr11 60214511 60214903 -90568650 - AluSq SINE Alu 0 401 1 359 341 138 15 chr11 60214903 60215078 -90568475 - L3 LINE CR1 -252 1325 1089 228 309 25 0 chr11 60215196 60215277 -90568276 - L3 LINE CR1 -913 664 582 327 291 14 21 chr11 60215549 60215690 -90567863 + MIR SINE MIR 120 259 -3 181 323 121 20 chr11 60215681 60215780 -90567773 + MIR SINE MIR 104 212 -50 * 26 30 0 0 chr11 60216792 60216825 -90566728 + AT_rich Low_complexity Low_complexity 1 33 0 321 47 0 0 chr11 60216915 60216958 -90566595 + (TG)n Simple_repeat Simple_repeat 1 43 0 217 333 0 0 chr11 60217154 60217226 -90566327 - MIR SINE MIR -46 216 145 188 281 105 0 chr11 60217232 60217289 -90566264 - MIR SINE MIR -61 201 139 317 289 13 31 chr11 60217412 60217571 -90565982 - L1ME3A LINE L1 -4 6166 6011 294 260 55 0 chr11 60217636 60217709 -90565844 - L1MC4 LINE L1 -1064 6978 6902 390 382 18 18 chr11 60217855 60218075 -90565478 + L2 LINE L2 2866 3085 -187 505 224 14 56 chr11 60218304 60218447 -90565106 - MER20 DNA MER1_type -82 137 1 1845 118 35 131 chr11 60219290 60219696 -90563857 - MLT1B LTR MaLR 0 390 24 231 256 13 13 chr11 60221334 60221412 -90562141 + (TA)n Simple_repeat Simple_repeat 1 78 0 6647 74 24 1 chr11 60221489 60222911 -90560642 - L1PA7 LINE L1 -7 6147 4707 1992 134 0 11 chr11 60223027 60223311 -90560242 - AluJb SINE Alu -31 281 1 259 160 0 40 chr11 60223325 60223375 -90560178 + MLT2C2 LTR ERVL 372 419 -45 1713 189 7 3 chr11 60224699 60224996 -90558557 - AluJo SINE Alu -14 298 1 1322 191 42 19 chr11 60225137 60225446 -90558107 + L1MA9 LINE L1 5959 6274 -38 1500 99 0 0 chr11 60226190 60226381 -90557172 + AluSc SINE Alu 103 293 -16 26 74 0 0 chr11 60227616 60227670 -90555883 + AT_rich Low_complexity Low_complexity 1 54 0 24 85 0 0 chr11 60228175 60228234 -90555319 + AT_rich Low_complexity Low_complexity 1 59 0 480 288 193 9 chr11 60228332 60228544 -90555009 + MIR SINE MIR 1 251 -11 2021 42 0 0 chr11 60229266 60229507 -90554046 - L1PA3 LINE L1 -5 6150 5910 1517 132 26 58 chr11 60229507 60229818 -90553735 - L1MB2 LINE L1 -2 6169 5869 206 295 54 54 chr11 60229909 60230021 -90553532 + L2 LINE L2 2949 3060 -212 2345 94 3 0 chr11 60230251 60230548 -90553005 + AluSg SINE Alu 1 298 -12 720 111 0 0 chr11 60230680 60230797 -90552756 + (TAGA)n Simple_repeat Simple_repeat 4 120 0 350 176 82 0 chr11 60230837 60230922 -90552631 - MER103 DNA DNA -3 163 72 607 316 21 11 chr11 60231085 60231275 -90552278 - MIR SINE MIR -38 224 33 399 259 49 89 chr11 60231418 60231642 -90551911 - MER58C DNA MER1_type 0 215 1 2041 88 4 4 chr11 60231998 60232271 -90551282 + AluSx SINE Alu 1 273 -39 2286 93 3 0 chr11 60232288 60232589 -90550964 + AluSc SINE Alu 1 302 -7 1677 0 0 0 chr11 60232719 60232906 -90550647 - L1PA3 LINE L1 -188 5967 5781 780 30 0 30 chr11 60232906 60232993 -90550560 + L1PA3 LINE L1 6058 6154 -1 458 237 34 8 chr11 60234057 60234175 -90549378 + MER5C DNA MER1_type 4 124 -200 3684 65 4 4 chr11 60234451 60234941 -90548612 - L1PA8 LINE L1 -4 6168 5679 428 77 0 15 chr11 60234941 60235006 -90548547 + L1PA8 LINE L1 5606 5669 -497 23 0 0 0 chr11 60235041 60235064 -90548489 + AT_rich Low_complexity Low_complexity 1 23 0 939 240 107 30 chr11 60235105 60235865 -90547688 - L1ME2 LINE L1 -6 6158 5254 17384 36 8 2 chr11 60235912 60238858 -90544695 - L1PA4 LINE L1 0 6155 3230 24783 133 19 77 chr11 60238958 60243929 -90539624 - L1P LINE L1 -1451 4695 12 3272 186 23 4 chr11 60244056 60244751 -90538802 + L1 LINE L1 4623 5330 -816 4503 173 60 0 chr11 60244767 60246483 -90537070 + L1PBa LINE L1 6 1997 -4866 2012 153 97 0 chr11 60246614 60246986 -90536567 + L1PB4 LINE L1 1467 1874 -4975 4346 133 26 0 chr11 60246986 60247690 -90535863 + L1PB4 LINE L1 6137 6858 -1 1199 139 15 5 chr11 60247921 60248122 -90535431 + MSTA LTR MaLR 1 203 -225 577 303 132 36 chr11 60248771 60249127 -90534426 - L2 LINE L2 -33 3280 2891 1287 172 16 26 chr11 60249195 60249504 -90534049 + L1MA7 LINE L1 5698 6223 -68 2594 174 52 14 chr11 60249504 60250004 -90533549 + MER44D DNA MER2_type 1 574 -31 877 273 90 34 chr11 60250253 60250309 -90533244 - L1M4 LINE L1 -1199 4947 4896 1355 206 88 29 chr11 60250309 60250683 -90532870 - MSTD LTR MaLR 0 396 1 877 273 90 34 chr11 60250683 60251091 -90532462 - L1M4 LINE L1 -1250 4896 4457 317 225 33 40 chr11 60251098 60251249 -90532304 + L1M4 LINE L1 913 1062 -5218 250 354 35 7 chr11 60252082 60252226 -90531327 - MIR SINE MIR -19 243 96 746 266 44 55 chr11 60252504 60252797 -90530756 + L1M4 LINE L1 174 463 -5850 507 231 15 13 chr11 60252810 60252975 -90530578 + L1M4 LINE L1 1118 1274 -5032 576 267 82 47 chr11 60253123 60253441 -90530112 - MER88 LTR ERVL -130 334 6 7300 232 67 33 chr11 60253445 60254306 -90529247 + L1M4 LINE L1 923 1754 -4628 2256 103 0 10 chr11 60254306 60254617 -90528936 + AluSx SINE Alu 5 312 0 7300 232 67 33 chr11 60254617 60257042 -90526511 + L1M4 LINE L1 1754 4275 -2107 12588 222 59 37 chr11 60257070 60258461 -90525092 + L1PA13 LINE L1 1776 3135 -3662 771 168 0 0 chr11 60258461 60258580 -90524973 + AluJb SINE Alu 1 119 -193 207 0 0 0 chr11 60258580 60258603 -90524950 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 12588 222 59 37 chr11 60258603 60260711 -90522842 + L1PA13 LINE L1 3135 5505 -1292 180 0 0 0 chr11 60260711 60260731 -90522822 + (CA)n Simple_repeat Simple_repeat 2 21 0 12588 222 59 37 chr11 60260731 60261284 -90522269 + L1PA13 LINE L1 5505 6045 -752 2457 162 17 9 chr11 60261284 60261746 -90521807 + L1P LINE L1 4686 5151 -995 676 264 51 66 chr11 60261850 60262183 -90521370 + L1MC3 LINE L1 6382 6709 -1076 349 216 0 14 chr11 60262252 60262326 -90521227 + MLT1F1 LTR MaLR 53 125 -442 1313 247 83 7 chr11 60262334 60262791 -90520762 + L1MC3 LINE L1 7200 7691 -94 300 208 73 2 chr11 60262822 60262917 -90520636 - MLT1E3 LTR MaLR -16 608 451 866 241 146 39 chr11 60263660 60264091 -90519462 - L2 LINE L2 -2 3311 2835 3388 204 17 5 chr11 60264282 60265061 -90518492 - L1PA16 LINE L1 -1650 4496 3709 * 5507 164 30 27 chr11 60265060 60266739 -90516814 + L1PA16 LINE L1 4497 6166 0 201 346 47 0 chr11 60268550 60268657 -90514896 - MIR3 SINE MIR -5 203 92 314 309 101 7 chr11 60268756 60268905 -90514648 - MIR SINE MIR -56 206 44 217 345 12 0 chr11 60269218 60269302 -90514251 + MIR SINE MIR 122 206 -56 20821 52 2 3 chr11 60270655 60273305 -90510248 - L1P LINE L1 -2876 3270 623 777 73 0 0 chr11 60273305 60273401 -90510152 - L1P LINE L1 -6050 96 1 16135 128 5 11 chr11 60273411 60275855 -90507698 - HERV9 LTR ERV1 -5915 2484 55 634 137 84 76 chr11 60275838 60275969 -90507584 - pTR5 LTR ERV1 -2001 437 306 * 304 252 58 0 chr11 60275970 60276073 -90507480 - LTR30 LTR ERV1 -70 652 544 1619 124 3 101 chr11 60276073 60276380 -90507173 - LTR12 LTR ERV1 -437 277 1 2666 90 0 8 chr11 60276381 60276737 -90506816 - THE1B LTR MaLR -11 353 1 521 318 74 0 chr11 60276908 60277150 -90506403 - HAL1 LINE L1 -854 1653 1394 182 366 56 0 chr11 60278878 60278949 -90504604 + L3 LINE CR1 74 148 -1429 2352 81 0 10 chr11 60279023 60279350 -90504203 - AluSc SINE Alu 0 309 1 428 245 9 0 chr11 60279748 60279854 -90503699 - MIR SINE MIR -50 212 106 278 296 0 28 chr11 60279996 60280104 -90503449 + (TTCA)n Simple_repeat Simple_repeat 3 107 0 242 339 42 17 chr11 60280779 60280897 -90502656 + MER5A DNA MER1_type 64 184 -5 5521 124 35 1 chr11 60283840 60284887 -90498666 + L1PA13 LINE L1 5084 6157 -6 1584 260 63 33 chr11 60284888 60285682 -90497871 + L1MB7 LINE L1 2371 3127 -4438 5832 113 19 24 chr11 60285693 60287079 -90496474 - L1PA13 LINE L1 -12 6151 4768 401 364 7 7 chr11 60287359 60287510 -90496043 - L2 LINE L2 -1095 2219 2069 669 316 146 13 chr11 60287531 60287832 -90495721 + L2 LINE L2 2205 2545 -769 501 252 0 0 chr11 60287839 60287946 -90495607 + MER2 DNA MER2_type 1 107 -238 6941 141 16 6 chr11 60287957 60290227 -90493326 - L1MA1 LINE L1 -2 6300 4004 4741 131 17 2 chr11 60290236 60291063 -90492490 - L1PB4 LINE L1 -121 6035 5197 1152 258 11 39 chr11 60291054 60291418 -90492135 - L1PA15-16 LINE L1 -3935 2914 2561 * 4365 107 3 18 chr11 60291530 60292191 -90491362 + L1PA13 LINE L1 5512 6162 -1 3278 241 32 20 chr11 60292192 60293517 -90490036 + L1MB7 LINE L1 4303 5824 -1741 3489 221 26 22 chr11 60293561 60293748 -90489805 + L1MB7 LINE L1 6673 6858 -745 1676 187 11 3 chr11 60293748 60294031 -90489522 + AluJo SINE Alu 11 295 -17 3489 221 26 22 chr11 60294031 60294760 -90488793 + L1MB7 LINE L1 6858 7593 -10 3648 195 56 28 chr11 60294773 60295971 -90487582 + L1MB8 LINE L1 4948 6173 -5 305 309 101 60 chr11 60296111 60296447 -90487106 - MLT1J1 LTR MaLR -29 417 68 563 316 41 41 chr11 60296538 60296782 -90486771 - MIR SINE MIR -17 245 2 180 0 0 0 chr11 60297482 60297502 -90486051 + (A)n Simple_repeat Simple_repeat 1 20 0 331 389 23 14 chr11 60297978 60298194 -90485359 - MIR SINE MIR -41 221 4 293 354 10 10 chr11 60298362 60298458 -90485095 + MIR SINE MIR 17 112 -150 186 43 0 0 chr11 60298498 60298521 -90485032 + (TG)n Simple_repeat Simple_repeat 1 23 0 25 31 0 0 chr11 60300290 60300322 -90483231 + AT_rich Low_complexity Low_complexity 1 32 0 1387 147 43 9 chr11 60300421 60300653 -90482900 + THE1C LTR MaLR 1 240 -135 644 258 89 40 chr11 60300695 60301021 -90482532 + L1ME1 LINE L1 5823 6164 -2 473 163 93 0 chr11 60301849 60301935 -90481618 + U3 snRNA snRNA 3 96 -121 5802 158 47 19 chr11 60301943 60303085 -90480468 - Ricksha_a DNA DNA -7 1174 1 1091 203 124 57 chr11 60304010 60304484 -90479069 + L1ME1 LINE L1 5653 6158 -8 246 266 0 0 chr11 60305008 60305072 -90478481 - MIR SINE MIR -114 148 85 381 356 68 6 chr11 60305629 60305806 -90477747 + MIR SINE MIR 14 201 -61 1637 134 24 0 chr11 60305960 60306214 -90477339 + L1PB3 LINE L1 5889 6148 -6 27 29 0 0 chr11 60306215 60306249 -90477304 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr11 60306277 60306303 -90477250 + AT_rich Low_complexity Low_complexity 1 26 0 268 299 13 13 chr11 60306555 60306632 -90476921 - MER2 DNA MER2_type -1 344 268 309 159 58 0 chr11 60306639 60306708 -90476845 + L1 LINE L1 5208 5280 -866 355 325 121 6 chr11 60306715 60306872 -90476681 - L2 LINE L2 -289 3024 2850 492 229 6 11 chr11 60306908 60307087 -90476466 + (ATG)n Simple_repeat Simple_repeat 2 179 0 714 254 6 0 chr11 60307107 60307272 -90476281 - MIR SINE MIR -57 205 40 797 292 26 46 chr11 60307313 60307618 -90475935 - L2 LINE L2 -414 2900 2602 228 226 16 0 chr11 60307683 60307745 -90475808 + L1 LINE L1 5188 5250 -896 517 378 30 16 chr11 60307745 60308369 -90475184 + L1M2b LINE L1 31 1960 -5249 529 336 11 40 chr11 60308424 60308698 -90474855 + L1PBb LINE L1 699 964 -5886 2737 234 49 26 chr11 60308937 60309758 -90473795 + L1PBb LINE L1 1718 2557 -4292 3277 180 52 2 chr11 60309875 60310515 -90473038 - L1MA5 LINE L1 -36 6264 5593 3124 190 11 6 chr11 60310518 60311166 -90472387 - L1MA5 LINE L1 -1 6299 5649 1902 268 16 20 chr11 60311268 60311768 -90471785 - ERVL LTR ERVL -5095 669 172 495 182 27 8 chr11 60311777 60311911 -90471642 - MLT2D LTR ERVL -260 154 20 2139 124 0 0 chr11 60312016 60312307 -90471246 + AluSx SINE Alu 1 291 -21 501 221 0 0 chr11 60312411 60312506 -90471047 - L1MA5 LINE L1 -709 5591 5497 7031 47 27 0 chr11 60312507 60313466 -90470087 - L1PA5 LINE L1 -1 6153 5176 210 37 0 0 chr11 60313761 60313788 -90469765 + (CATA)n Simple_repeat Simple_repeat 2 28 0 2512 235 48 11 chr11 60313881 60314676 -90468877 - L1M4 LINE L1 -1090 5056 4233 1943 132 3 7 chr11 60314677 60314964 -90468589 - AluSx SINE Alu -24 288 3 263 339 25 17 chr11 60316574 60316692 -90466861 - MIR3 SINE MIR -5 203 85 398 331 28 33 chr11 60316769 60316950 -90466603 - MIR SINE MIR -48 214 35 23 92 0 0 chr11 60316955 60317020 -90466533 + AT_rich Low_complexity Low_complexity 1 65 0 409 304 41 36 chr11 60317163 60317357 -90466196 + MIR SINE MIR 5 199 -63 495 259 63 51 chr11 60318052 60318210 -90465343 - MLT1D LTR MaLR -345 160 1 223 248 39 78 chr11 60318229 60318358 -90465195 - MIR3 SINE MIR -2 206 83 226 340 40 20 chr11 60318560 60318660 -90464893 - MIR SINE MIR -148 114 13 243 359 19 9 chr11 60319349 60319455 -90464098 + MIR SINE MIR 46 152 -110 289 331 102 12 chr11 60320502 60320668 -90462885 + LTR16C LTR ERVL 203 383 -108 4798 31 0 26 chr11 60320668 60321273 -90462280 - L1PA4 LINE L1 -202 5953 5365 489 55 82 0 chr11 60321269 60321342 -90462211 + L1PA5 LINE L1 5977 6055 -99 * 2010 176 77 42 chr11 60321337 60321823 -90461730 - L1MD1 LINE L1 -154 6088 5582 230 51 51 0 chr11 60321823 60321862 -90461691 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2010 176 77 42 chr11 60321862 60321881 -90461672 - L1MD1 LINE L1 -660 5582 5565 419 248 33 7 chr11 60321900 60322053 -90461500 - L1M4 LINE L1 -5211 1331 1175 504 263 138 26 chr11 60322059 60322405 -90461148 + L1MB5 LINE L1 4456 4850 -1296 726 106 0 0 chr11 60322405 60322518 -90461035 + MER2 DNA MER2_type 97 209 -136 25 83 0 0 chr11 60322690 60322750 -90460803 + AT_rich Low_complexity Low_complexity 1 60 0 192 77 0 0 chr11 60324435 60324461 -90459092 + (CA)n Simple_repeat Simple_repeat 2 27 0 383 308 121 6 chr11 60324507 60324689 -90458864 - MIR SINE MIR -29 233 31 426 319 110 11 chr11 60324884 60325075 -90458478 + MIR SINE MIR 13 222 -40 28 0 0 0 chr11 60325532 60325560 -90457993 + AT_rich Low_complexity Low_complexity 1 28 0 289 355 26 26 chr11 60325760 60325912 -90457641 - MIR SINE MIR -94 168 17 2007 130 3 3 chr11 60326018 60326311 -90457242 - AluSx SINE Alu -17 295 3 1323 286 95 2 chr11 60327459 60328049 -90455504 - L1ME1 LINE L1 -49 6117 5473 13236 28 0 0 chr11 60328212 60330549 -90453004 + L1PA3 LINE L1 3815 6152 -3 243 305 86 33 chr11 60330769 60330920 -90452633 + MIR SINE MIR 91 249 -13 31 0 0 0 chr11 60330923 60330954 -90452599 + AT_rich Low_complexity Low_complexity 1 31 0 615 232 50 17 chr11 60331308 60331489 -90452064 + MLT1D LTR MaLR 8 194 -311 4266 74 28 0 chr11 60331531 60332097 -90451456 + L1PA7 LINE L1 5572 6153 -1 190 125 42 21 chr11 60332104 60332152 -90451401 + GA-rich Low_complexity Low_complexity 2 50 0 328 182 45 0 chr11 60332160 60332226 -90451327 + L1MA9 LINE L1 6157 6225 -87 581 240 61 5 chr11 60332286 60332482 -90451071 + L1MB5 LINE L1 4937 5143 -1003 13113 224 41 20 chr11 60332483 60333034 -90450519 + L1MA5 LINE L1 9 547 -6395 249 139 0 0 chr11 60333034 60333070 -90450483 - U2 snRNA snRNA -152 36 1 13113 224 41 20 chr11 60333070 60336224 -90447329 + L1MA5 LINE L1 547 3635 -3307 2727 136 35 7 chr11 60336224 60336681 -90446872 + L1PA16 LINE L1 5694 6163 -3 13113 224 41 20 chr11 60336681 60339354 -90444199 + L1MA5 LINE L1 3635 6936 -6 26 64 0 0 chr11 60339387 60339434 -90444119 + AT_rich Low_complexity Low_complexity 1 47 0 537 298 32 6 chr11 60339492 60339650 -90443903 + MIR SINE MIR 63 224 -38 989 265 51 27 chr11 60339682 60340318 -90443235 + L1PB4 LINE L1 5127 5906 -250 * 2969 235 24 15 chr11 60339789 60340582 -90442971 + L1MB5 LINE L1 5375 6174 0 835 233 87 11 chr11 60340591 60340871 -90442682 + MLT1D LTR MaLR 175 505 0 335 282 101 43 chr11 60341006 60341215 -90442338 - L2 LINE L2 0 3313 3093 282 288 179 33 chr11 60341456 60341668 -90441885 - MIR SINE MIR 0 262 20 527 280 136 18 chr11 60341835 60342232 -90441321 - MLT1J1 LTR MaLR 0 446 3 369 43 0 0 chr11 60342490 60342537 -90441016 + (CA)n Simple_repeat Simple_repeat 2 48 0 39 0 0 0 chr11 60343064 60343103 -90440450 + AT_rich Low_complexity Low_complexity 1 39 0 7390 31 0 0 chr11 60343103 60343977 -90439576 - L1PA3 LINE L1 -3 6152 5279 518 85 0 37 chr11 60343979 60344061 -90439492 - L1PA8 LINE L1 -3 6169 6091 263 278 0 0 chr11 60344339 60344393 -90439160 - L2 LINE L2 -349 2964 2911 30 0 0 0 chr11 60344765 60344795 -90438758 + AT_rich Low_complexity Low_complexity 1 30 0 193 250 18 36 chr11 60346031 60346087 -90437466 - MIR SINE MIR -136 126 72 331 325 80 25 chr11 60346133 60346296 -90437257 - MIR SINE MIR -43 219 48 350 372 21 16 chr11 60346513 60346704 -90436849 + MIR SINE MIR 19 210 -52 4553 101 193 129 chr11 60347122 60348450 -90435103 - pTR5 LTR ERV1 0 2438 741 904 184 13 0 chr11 60348683 60348841 -90434712 - MLT1D LTR MaLR -345 160 1 192 331 48 41 chr11 60349257 60349402 -90434151 - MIR SINE MIR -110 152 7 3100 189 17 11 chr11 60349813 60350452 -90433101 - MER44D DNA MER2_type -2 603 1 216 347 27 80 chr11 60350642 60350792 -90432761 + MIR SINE MIR 34 175 -87 22 0 0 0 chr11 60351678 60351700 -90431853 + AT_rich Low_complexity Low_complexity 1 22 0 562 299 96 14 chr11 60351766 60352047 -90431506 + LTR16C LTR ERVL 173 476 -15 338 305 79 16 chr11 60352315 60352505 -90431048 - HAL1 LINE L1 -856 1651 1450 820 243 68 57 chr11 60352635 60352931 -90430622 - L1M2 LINE L1 -5840 1009 711 427 178 0 89 chr11 60352938 60353039 -90430514 - L1M2 LINE L1 -6222 627 536 1059 266 85 37 chr11 60353045 60353561 -90429992 + L1MC3 LINE L1 5875 6415 -1370 1499 146 68 84 chr11 60353592 60353962 -90429591 - MER39 LTR ERV1 -2 705 342 1601 139 0 11 chr11 60353967 60354241 -90429312 - L1PA13 LINE L1 -4 6159 5889 2286 183 24 0 chr11 60354241 60354710 -90428843 + L1P LINE L1 4907 5386 -760 1768 157 44 0 chr11 60354719 60355012 -90428541 - MER39 LTR ERV1 -401 306 1 878 246 68 11 chr11 60355012 60355293 -90428260 + L1MC3 LINE L1 6540 6836 -949 1381 236 115 32 chr11 60355295 60355897 -90427656 + L1MC3 LINE L1 7023 7674 -111 875 287 110 35 chr11 60355926 60356361 -90427192 - MLT1D LTR MaLR 0 505 38 191 323 31 0 chr11 60356863 60356928 -90426625 - L2 LINE L2 0 3313 3247 205 50 25 25 chr11 60356928 60356968 -90426585 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 705 268 137 21 chr11 60358107 60358436 -90425117 - L2 LINE L2 -83 3230 2864 22 35 0 0 chr11 60358769 60358798 -90424755 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr11 60358869 60358904 -90424649 + AT_rich Low_complexity Low_complexity 1 35 0 2527 157 78 31 chr11 60358905 60358934 -90424619 - MLT2B2 LTR ERVL 0 515 489 544 38 25 0 chr11 60358934 60359013 -90424540 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 2527 157 78 31 chr11 60359013 60359473 -90424080 - MLT2B2 LTR ERVL -26 489 3 180 372 31 23 chr11 60360995 60361124 -90422429 - MIR3 SINE MIR -1 207 78 315 345 96 10 chr11 60361177 60361374 -90422179 - MIR SINE MIR -26 236 23 281 309 52 29 chr11 60361695 60361831 -90421722 + MIR SINE MIR 124 262 0 22 56 0 0 chr11 60362276 60362312 -90421241 + AT_rich Low_complexity Low_complexity 1 36 0 2023 145 34 0 chr11 60362312 60362664 -90420889 - L1PA16 LINE L1 -9 6157 5794 3281 88 16 4 chr11 60362681 60363165 -90420388 + L1PA11 LINE L1 5612 6153 -20 946 120 13 25 chr11 60363181 60363339 -90420214 + L1PA16 LINE L1 5675 5830 -336 216 158 0 0 chr11 60363559 60363597 -90419956 + (TG)n Simple_repeat Simple_repeat 1 38 0 1407 274 65 43 chr11 60364956 60365422 -90418131 - L1ME1 LINE L1 -8 6158 5671 1884 122 0 59 chr11 60365422 60365726 -90417827 + AluSx SINE Alu 6 291 -21 1407 274 65 43 chr11 60365726 60365935 -90417618 - L1ME1 LINE L1 -495 5671 5468 33 0 0 0 chr11 60366372 60366405 -90417148 + AT_rich Low_complexity Low_complexity 1 33 0 513 270 60 11 chr11 60366729 60366914 -90416639 + MLT1D LTR MaLR 1 194 -311 346 277 0 0 chr11 60366949 60367061 -90416492 + L1M4 LINE L1 49 160 -6382 1412 235 56 34 chr11 60367079 60367646 -90415907 + L1M4 LINE L1 833 1412 -5130 510 125 0 0 chr11 60367648 60367728 -90415825 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 1507 205 3 22 chr11 60367728 60368040 -90415513 - AluJb SINE Alu -6 306 1 1130 278 47 25 chr11 60368041 60368573 -90414980 + L1M4 LINE L1 1400 1937 -4709 1845 175 30 55 chr11 60368573 60368939 -90414614 + MSTC LTR MaLR 72 428 0 8050 219 45 37 chr11 60368944 60369084 -90414469 - L1 LINE L1 -743 5403 5266 1425 202 61 4 chr11 60369084 60369361 -90414192 - AluJo SINE Alu -19 293 1 8050 219 45 37 chr11 60369361 60371097 -90412456 - L1 LINE L1 -880 5266 3502 15224 37 6 0 chr11 60371097 60373709 -90409844 + L1PA5 LINE L1 3532 6149 -5 8050 219 45 37 chr11 60373709 60374289 -90409264 - L1 LINE L1 -2644 3502 2928 504 181 0 0 chr11 60374310 60374415 -90409138 - L1MA5 LINE L1 0 6300 6196 5002 167 18 8 chr11 60374426 60375778 -90407775 + L1MA6 LINE L1 3287 4625 -1675 3148 132 45 4 chr11 60375778 60376269 -90407284 + MER9 LTR ERVK 1 511 0 5002 167 18 8 chr11 60376269 60377747 -90405806 + L1MA6 LINE L1 4625 6293 -7 1845 158 6 28 chr11 60377747 60378105 -90405448 + L1MB1 LINE L1 5815 6168 0 256 358 83 37 chr11 60378216 60378434 -90405119 - L2 LINE L2 -339 2975 2748 192 309 15 0 chr11 60378434 60378502 -90405051 - L2 LINE L2 -934 2380 2312 3655 155 22 2 chr11 60378641 60379272 -90404281 + L1MC1 LINE L1 5690 6333 0 27 0 0 0 chr11 60379577 60379604 -90403949 + AT_rich Low_complexity Low_complexity 1 27 0 281 327 123 14 chr11 60381027 60381238 -90402315 - MIR SINE MIR -11 251 18 328 341 44 7 chr11 60381457 60381592 -90401961 + MIR SINE MIR 62 201 -61 255 358 25 62 chr11 60382294 60382456 -90401097 - MIR SINE MIR -94 168 13 205 278 19 0 chr11 60383124 60383178 -90400375 - MIR SINE MIR -23 239 185 201 74 0 0 chr11 60383450 60383477 -90400076 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 180 323 32 16 chr11 60383488 60383550 -90400003 - L2 LINE L2 -2 3311 3249 1302 104 20 10 chr11 60383577 60383779 -90399774 - L1PA13 LINE L1 0 6163 5960 614 324 61 48 chr11 60384928 60385537 -90398016 + L1PA15-16 LINE L1 2 618 -6231 10508 216 38 63 chr11 60385767 60391247 -90392306 + L1MA4A LINE L1 780 6640 -365 797 150 8 0 chr11 60391364 60391497 -90392056 - L1MB1 LINE L1 -240 5928 5795 231 188 0 0 chr11 60391551 60391599 -90391954 + GA-rich Low_complexity Low_complexity 2 49 0 23 0 0 0 chr11 60391651 60391674 -90391879 + AT_rich Low_complexity Low_complexity 1 23 0 751 285 84 11 chr11 60392022 60392285 -90391268 + LTR33 LTR ERVL 14 295 -226 2497 160 36 20 chr11 60392620 60393115 -90390438 - L1MA7 LINE L1 -5 6286 5784 641 181 47 27 chr11 60393115 60393264 -90390289 + L1M2 LINE L1 5470 5621 -670 287 378 96 24 chr11 60393790 60393999 -90389554 - MIR SINE MIR -31 231 8 33 0 0 0 chr11 60394033 60394066 -90389487 + AT_rich Low_complexity Low_complexity 1 33 0 630 92 0 0 chr11 60394162 60394249 -90389304 - L1MA4 LINE L1 -50 6250 6164 30 77 0 0 chr11 60395194 60395259 -90388294 + AT_rich Low_complexity Low_complexity 1 65 0 960 197 64 15 chr11 60395390 60396008 -90387545 - L1MB7 LINE L1 -1 6183 5431 903 165 53 16 chr11 60396003 60396191 -90387362 - L1MB7 LINE L1 -1400 4746 4552 * 456 255 9 0 chr11 60396236 60396342 -90387211 - L1M4 LINE L1 -5817 725 619 2026 198 100 15 chr11 60396411 60396456 -90387097 - MLT2B1 LTR ERVL 0 520 480 551 53 13 0 chr11 60396456 60396531 -90387022 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 2026 198 100 15 chr11 60396531 60396964 -90386589 - MLT2B1 LTR ERVL -40 480 1 10276 165 51 4 chr11 60396964 60398756 -90384797 - ERVL-B1 LTR ERVL -7 5757 3882 * 17445 201 39 27 chr11 60398754 60402203 -90381350 - ERVL-B1 LTR ERVL -2058 3706 299 1765 47 0 4 chr11 60402203 60402435 -90381118 + L1PA3 LINE L1 5925 6155 0 17445 201 39 27 chr11 60402435 60402451 -90381102 - ERVL-B1 LTR ERVL -5465 299 285 1843 170 0 7 chr11 60402451 60402779 -90380774 + AluJb SINE Alu 1 312 0 17445 201 39 27 chr11 60402779 60402974 -90380579 - ERVL-B1 LTR ERVL -5479 285 2 1515 190 49 52 chr11 60402975 60403020 -90380533 - MLT2B1 LTR ERVL 0 414 370 215 0 67 0 chr11 60403020 60403050 -90380503 + (TAGA)n Simple_repeat Simple_repeat 3 34 0 1515 190 49 52 chr11 60403050 60403437 -90380116 - MLT2B1 LTR ERVL -44 370 1 350 387 21 5 chr11 60403444 60403635 -90379918 - L1MEd LINE L1 -5005 1114 921 2168 162 39 38 chr11 60404393 60404939 -90378614 + MLT2A2 LTR ERVL 1 547 -7 2093 138 122 13 chr11 60405976 60406360 -90377193 - MSTA LTR MaLR -2 426 1 337 279 99 19 chr11 60406374 60406535 -90377018 - L2 LINE L2 -46 3267 3094 1165 279 31 22 chr11 60406600 60407109 -90376444 - L1M4 LINE L1 -2071 4075 3562 3699 200 32 29 chr11 60407116 60408021 -90375532 - L1MB8 LINE L1 -9 6169 5262 353 153 0 0 chr11 60408019 60408078 -90375475 - L1MB8 LINE L1 -2467 3679 3621 * 1388 150 20 8 chr11 60408078 60408324 -90375229 + L1MB1 LINE L1 5817 6065 -103 * 3261 136 28 0 chr11 60408316 60408928 -90374625 + L1PA16 LINE L1 5436 6165 -1 649 156 0 0 chr11 60409022 60409131 -90374422 + L1MB1 LINE L1 6060 6168 0 1374 265 48 7 chr11 60409131 60409732 -90373821 - L1MB8 LINE L1 -2515 3631 3006 832 216 71 39 chr11 60409734 60409908 -90373645 - L1MB8 LINE L1 -3339 2807 2621 8554 58 2 6 chr11 60409908 60410980 -90372573 - MER11C LTR ERVK -3 1068 1 832 216 71 39 chr11 60410980 60411059 -90372494 - L1MB8 LINE L1 -3525 2621 2546 1059 102 0 0 chr11 60411059 60411196 -90372357 + AluSq/x SINE Alu 1 137 -176 385 279 42 47 chr11 60411216 60411431 -90372122 - L1M4c LINE L1 -4321 2817 2604 24 32 0 0 chr11 60411452 60411483 -90372070 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr11 60411646 60411686 -90371867 + AT_rich Low_complexity Low_complexity 1 40 0 231 156 0 0 chr11 60411700 60411745 -90371808 - LTR66 LTR ERVL -172 438 394 230 156 0 0 chr11 60411707 60411752 -90371801 + LTR66 LTR ERVL 394 438 -172 * 4660 258 56 33 chr11 60411838 60412818 -90370735 - L1M4c LINE L1 -4574 2564 1609 1868 136 0 0 chr11 60412818 60413091 -90370462 - AluSc SINE Alu 0 309 37 4660 258 56 33 chr11 60413091 60414234 -90369319 - L1M4c LINE L1 -5529 1609 241 2064 157 53 31 chr11 60414278 60414812 -90368741 + MLT2A2 LTR ERVL 1 554 0 418 245 0 0 chr11 60414812 60414914 -90368639 - L1M4c LINE L1 -6662 197 96 624 195 81 0 chr11 60414915 60415038 -90368515 - FLAM_C SINE Alu -10 133 1 318 318 9 9 chr11 60415120 60415230 -90368323 - L1M4 LINE L1 -2570 3576 3467 359 269 148 4 chr11 60415582 60415742 -90367811 - MLT1J LTR MaLR -284 162 15 232 179 26 0 chr11 60416022 60416100 -90367453 + (TTA)n Simple_repeat Simple_repeat 3 82 0 548 183 6 112 chr11 60416138 60416450 -90367103 - AluYa5 SINE Alu -5 306 28 1717 214 28 0 chr11 60416474 60416829 -90366724 + MLT1A1 LTR MaLR 1 365 0 906 284 94 94 chr11 60416961 60417161 -90366392 + MLT1G1 LTR MaLR 1 200 -395 1566 190 7 0 chr11 60417161 60417488 -90366065 - AluJb SINE Alu 0 335 7 906 284 94 94 chr11 60417488 60417880 -90365673 + MLT1G1 LTR MaLR 199 594 -1 782 191 0 0 chr11 60418165 60418296 -90365257 - AluJb SINE Alu -24 288 158 191 318 16 48 chr11 60419135 60419261 -90364292 - MIR SINE MIR -49 213 92 2252 113 0 0 chr11 60419548 60419857 -90363696 + AluSc SINE Alu 1 309 0 304 202 0 85 chr11 60419984 60420078 -90363475 + L1MC4 LINE L1 6618 6703 -1339 248 279 81 0 chr11 60420827 60420913 -90362640 - MLT1J LTR MaLR -4 507 415 1702 261 82 52 chr11 60420921 60421577 -90361976 + MER21B LTR ERV1 17 692 -171 312 287 54 39 chr11 60421627 60421756 -90361797 - MLT1J LTR MaLR -123 388 258 1226 256 72 30 chr11 60422044 60422639 -90360914 - L1MEc LINE L1 -1289 4926 4307 302 280 109 54 chr11 60422652 60422819 -90360734 - L1MEc LINE L1 -2500 3715 3559 2220 88 0 3 chr11 60422819 60423131 -90360422 + AluY SINE Alu 1 311 0 302 280 109 54 chr11 60423131 60423291 -90360262 - L1MEc LINE L1 -2656 3559 3409 3199 37 0 0 chr11 60423291 60423674 -90359879 - L1PA5 LINE L1 -4 6150 5768 302 280 109 54 chr11 60423674 60424029 -90359524 - L1MEc LINE L1 -2806 3409 2993 5133 185 19 32 chr11 60424035 60425818 -90357735 - L1MA8 LINE L1 0 6291 4532 528 182 0 0 chr11 60425918 60426017 -90357536 + L1PB4 LINE L1 6056 6154 -2 2038 138 7 0 chr11 60426662 60427005 -90356548 + AluSx SINE Alu 1 312 0 562 267 40 17 chr11 60427011 60427192 -90356361 + MIR SINE MIR 40 222 -40 407 237 18 18 chr11 60427518 60427632 -90355921 + LTR67 LTR ERVL 428 541 -16 189 0 0 0 chr11 60428077 60428098 -90355455 + (A)n Simple_repeat Simple_repeat 1 21 0 1566 263 61 56 chr11 60428139 60428291 -90355262 - L1MEc LINE L1 -4023 2373 2223 1952 154 3 3 chr11 60428291 60428590 -90354963 + AluSx SINE Alu 1 299 -13 1566 263 61 56 chr11 60428590 60429407 -90354146 - L1MEc LINE L1 -4173 2223 1399 203 293 87 27 chr11 60429408 60429558 -90353995 - L2 LINE L2 -44 3269 3111 1954 147 0 19 chr11 60429614 60429928 -90353625 + AluSx SINE Alu 1 308 -4 3908 251 36 26 chr11 60429955 60431104 -90352449 + L1M4 LINE L1 16 1175 -5367 274 337 37 22 chr11 60432299 60432460 -90351093 - MIR3 SINE MIR -31 177 14 265 333 43 22 chr11 60433306 60433444 -90350109 - MIR SINE MIR -72 190 50 1655 154 88 6 chr11 60433492 60433823 -90349730 + MER46B DNA MER2_type 1 233 -3 308 308 34 48 chr11 60434936 60435082 -90348471 - L2 LINE L2 -4 3309 3166 227 217 0 0 chr11 60435092 60435145 -90348408 + (TA)n Simple_repeat Simple_repeat 1 53 0 2388 43 0 30 chr11 60435259 60435563 -90347990 + AluY SINE Alu 1 295 -16 260 272 42 38 chr11 60435773 60435925 -90347628 + L1M3c LINE L1 958 1237 -5851 1585 265 29 40 chr11 60436577 60437066 -90346487 + L1M3c LINE L1 1539 2049 -5049 1729 189 0 0 chr11 60437066 60437351 -90346202 + AluJo SINE Alu 1 285 -27 1585 265 29 40 chr11 60437351 60437724 -90345829 + L1M3c LINE L1 2049 2424 -4674 1464 270 53 10 chr11 60437732 60438255 -90345298 + L1PBa LINE L1 6 551 -6312 1947 195 39 20 chr11 60438266 60438708 -90344845 + L1PBa LINE L1 596 1045 -5818 423 145 0 0 chr11 60438712 60438774 -90344779 + L1PBa LINE L1 1093 1154 -5709 203 324 14 0 chr11 60439422 60439493 -90344060 + CT-rich Low_complexity Low_complexity 3 74 0 1242 85 43 11 chr11 60439639 60439827 -90343726 - L1PB2 LINE L1 -2 6149 5956 196 377 43 0 chr11 60439988 60440057 -90343496 + MIR SINE MIR 48 119 -143 216 328 64 48 chr11 60440798 60440923 -90342630 - MIR3 SINE MIR 0 208 82 189 333 0 15 chr11 60441030 60441096 -90342457 - MIR SINE MIR -62 146 82 271 299 55 55 chr11 60441812 60441976 -90341577 + MIR SINE MIR 53 216 -46 228 273 0 0 chr11 60442433 60442510 -90341043 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 859 292 44 18 chr11 60442556 60442943 -90340610 - L1ME LINE L1 -382 5788 5392 268 295 155 0 chr11 60443287 60443416 -90340137 + MIR SINE MIR 108 256 -6 2180 91 11 0 chr11 60443636 60443923 -90339630 + AluSx SINE Alu 1 290 -22 334 202 11 11 chr11 60443923 60444012 -90339541 + (TATG)n Simple_repeat Simple_repeat 2 90 0 327 176 33 0 chr11 60444327 60444418 -90339135 + (TA)n Simple_repeat Simple_repeat 1 94 0 23 0 0 0 chr11 60444418 60444441 -90339112 + AT_rich Low_complexity Low_complexity 1 23 0 302 310 43 14 chr11 60446034 60446173 -90337380 - MIR3 SINE MIR -28 180 36 973 281 19 52 chr11 60446553 60446920 -90336633 + LTR16A LTR ERVL 91 445 -5 5832 112 37 3 chr11 60446965 60447931 -90335622 - L1PA15 LINE L1 0 6165 5170 299 296 43 35 chr11 60448202 60448317 -90335236 - MIR SINE MIR -79 183 68 212 196 0 78 chr11 60448359 60448410 -90335143 - MIR SINE MIR -116 146 100 299 326 34 75 chr11 60448492 60448639 -90334914 - MIR3 SINE MIR -67 141 1 357 303 176 0 chr11 60449036 60449201 -90334352 + MIR SINE MIR 21 214 -48 475 286 18 0 chr11 60449282 60449394 -90334159 - MER81 DNA DNA 0 114 1 207 378 109 0 chr11 60449430 60449549 -90334004 - L2 LINE L2 0 3272 3141 266 167 36 83 chr11 60449764 60449848 -90333705 + MER103 DNA DNA 43 122 -44 439 320 68 41 chr11 60450459 60450678 -90332875 + MIR SINE MIR 28 252 -10 181 229 33 49 chr11 60450699 60450760 -90332793 - MIR SINE MIR -94 168 109 21 0 0 0 chr11 60450864 60450885 -90332668 + AT_rich Low_complexity Low_complexity 1 21 0 2455 62 7 0 chr11 60451254 60451561 -90331992 - AluY SINE Alu -2 309 1 1953 58 0 0 chr11 60451736 60451978 -90331575 - L1P3 LINE L1 -378 5776 5535 7149 218 46 32 chr11 60451978 60452075 -90331478 - L1 LINE L1 -1813 5752 5658 2120 126 3 0 chr11 60452075 60452377 -90331176 - AluSq SINE Alu -10 303 1 7149 218 46 32 chr11 60452377 60453474 -90330079 - L1 LINE L1 -1907 5658 4578 1623 187 36 4 chr11 60453474 60453752 -90329801 - AluJo SINE Alu -25 287 1 7149 218 46 32 chr11 60453752 60454929 -90328624 - L1 LINE L1 -2987 4578 3344 1515 29 0 0 chr11 60454952 60455127 -90328426 - L1PA3 LINE L1 -3 6152 5978 4311 24 2 0 chr11 60455127 60456010 -90327543 + L1P1 LINE L1 4877 5760 -395 2916 6 0 0 chr11 60456071 60456385 -90327168 + AluYb8 SINE Alu 1 314 -4 1577 286 52 16 chr11 60456602 60457410 -90326143 - L1 LINE L1 -4276 3289 2453 1039 173 10 5 chr11 60457413 60457615 -90325938 - L1PB1 LINE L1 -8 6143 5941 321 299 107 21 chr11 60458254 60458448 -90325105 + MIR SINE MIR 29 262 0 195 234 31 31 chr11 60458486 60458550 -90325003 + MIR SINE MIR 88 151 -111 679 237 57 21 chr11 60458550 60458562 -90324991 - L1MA4A LINE L1 -321 5982 5972 4393 38 2 0 chr11 60458562 60459092 -90324461 - L1PA4 LINE L1 0 6155 5625 679 237 57 21 chr11 60459092 60459273 -90324280 - L1MA4A LINE L1 -331 5972 5782 * 3254 156 14 32 chr11 60459103 60459287 -90324266 - L1PA16 LINE L1 -215 6667 6481 1786 143 26 0 chr11 60459287 60459559 -90323994 - AluSq SINE Alu -11 302 24 3254 156 14 32 chr11 60459559 60459589 -90323964 - L1PA16 LINE L1 -401 6481 6452 318 130 0 0 chr11 60459589 60459635 -90323918 - FLAM SINE Alu -13 120 75 3254 156 14 32 chr11 60459635 60460413 -90323140 - L1PA16 LINE L1 -430 6452 5686 1925 185 8 0 chr11 60460411 60460800 -90322753 - L1 LINE L1 -1344 5518 5127 * 2510 173 19 8 chr11 60460803 60461319 -90322234 - L1 LINE L1 -1118 5744 5223 598 162 167 96 chr11 60461286 60461484 -90322069 - L1 LINE L1 -3825 3037 2826 * 1018 127 100 0 chr11 60461491 60461720 -90321833 - L1PA16 LINE L1 -4083 2780 2529 2495 88 0 0 chr11 60561962 60562270 -90221283 + AluSp SINE Alu 1 308 -5 381 279 7 15 chr11 60563998 60564134 -90219419 + MIR SINE MIR 120 254 -8 330 345 191 10 chr11 60564145 60564438 -90219115 + L2 LINE L2 2926 3271 -42 21 57 0 0 chr11 60564456 60564491 -90219062 + AT_rich Low_complexity Low_complexity 1 35 0 440 301 8 59 chr11 60564578 60564814 -90218739 - L1ME LINE L1 -603 5563 5340 2585 59 7 0 chr11 60565050 60565354 -90218199 + AluY SINE Alu 1 306 -5 26806 96 10 118 chr11 60565464 60568105 -90215448 + L1PA7 LINE L1 12 2936 -3218 5213 103 25 64 chr11 60568105 60568961 -90214592 + LTR12 LTR ERV1 5 826 0 26806 96 10 118 chr11 60568961 60573391 -90210162 + L1PA7 LINE L1 2936 6152 -2 194 61 0 30 chr11 60573483 60573516 -90210037 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 6867 23 0 0 chr11 60573516 60574307 -90209246 - L1PA3 LINE L1 -24 6131 5341 637 193 62 12 chr11 60574320 60574481 -90209072 + L1MA9 LINE L1 6106 6274 -38 23 92 0 0 chr11 60574481 60574546 -90209007 + AT_rich Low_complexity Low_complexity 1 65 0 1629 178 0 11 chr11 60574752 60575033 -90208520 + AluJo SINE Alu 5 282 -30 1037 248 80 127 chr11 60575052 60576355 -90207198 + L1MC5 LINE L1 6615 7855 -106 7612 31 0 0 chr11 60576617 60577925 -90205628 + L1PA3 LINE L1 4845 6153 -2 254 197 81 33 chr11 60578305 60578422 -90205131 - L1ME LINE L1 -363 5758 5629 562 280 202 26 chr11 60578703 60579010 -90204543 + L2 LINE L2 2947 3307 -6 218 313 217 9 chr11 60579299 60579412 -90204141 - MIR SINE MIR -62 146 4 927 162 19 0 chr11 60579976 60580130 -90203423 - MER5A DNA MER1_type -1 188 32 341 321 65 18 chr11 60581480 60581648 -90201905 + MIR SINE MIR 20 195 -67 911 300 142 47 chr11 60581713 60582472 -90201081 + HAL1 LINE L1 25 855 -1652 1355 236 83 69 chr11 60583729 60584370 -90199183 + HAL1 LINE L1 1454 2103 -404 735 264 104 0 chr11 60584377 60584570 -90198983 - MIR SINE MIR -29 233 21 729 237 43 82 chr11 60584573 60584837 -90198716 + HAL1 LINE L1 2086 2328 -179 2168 106 0 37 chr11 60584837 60585159 -90198394 + AluSg SINE Alu 1 310 0 729 237 43 82 chr11 60585159 60585332 -90198221 + HAL1 LINE L1 2328 2506 -1 241 288 150 0 chr11 60585916 60585996 -90197557 + MER91C DNA MER1_type 14 105 -35 776 277 54 4 chr11 60586446 60586688 -90196865 + MIR SINE MIR 2 255 -7 921 279 194 20 chr11 60587282 60587413 -90196140 - L2 LINE L2 0 3313 3206 183 42 0 0 chr11 60587413 60587437 -90196116 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 921 279 194 20 chr11 60587437 60587958 -90195595 - L2 LINE L2 -107 3206 2544 2119 142 0 0 chr11 60588777 60589080 -90194473 + AluSx SINE Alu 1 303 -9 301 337 40 0 chr11 60589283 60589384 -90194169 - L2 LINE L2 0 3313 3209 2176 91 0 11 chr11 60589753 60590065 -90193488 + AluSg SINE Alu 1 309 0 22 0 0 0 chr11 60590795 60590817 -90192736 + AT_rich Low_complexity Low_complexity 1 22 0 623 212 66 7 chr11 60590985 60591122 -90192431 + MER58B DNA MER1_type 197 341 0 624 269 151 32 chr11 60591193 60591463 -90192090 + L1MC4a LINE L1 2651 2888 -3258 375 60 0 0 chr11 60591463 60591513 -90192040 + (CA)n Simple_repeat Simple_repeat 2 51 0 624 269 151 32 chr11 60591513 60591707 -90191846 + L1MC4a LINE L1 2888 3170 -2976 22 35 0 0 chr11 60591871 60591900 -90191653 + AT_rich Low_complexity Low_complexity 1 29 0 3939 191 37 46 chr11 60592502 60593563 -90189990 + L1MA9 LINE L1 5221 6274 -38 321 260 201 7 chr11 60593598 60593752 -90189801 + L1MC4a LINE L1 4532 4715 -1431 608 174 7 56 chr11 60593755 60593899 -90189654 + FLAM_C SINE Alu 7 143 0 1827 157 19 19 chr11 60593983 60594295 -90189258 + AluJo SINE Alu 1 312 0 378 339 74 33 chr11 60594484 60594847 -90188706 + L1MC4a LINE L1 4783 5160 -986 21 36 0 0 chr11 60594847 60594875 -90188678 + AT_rich Low_complexity Low_complexity 1 28 0 615 307 87 41 chr11 60594911 60595472 -90188081 + L1MC4a LINE L1 5313 5899 -1909 1782 182 0 10 chr11 60595489 60595791 -90187762 + AluJo SINE Alu 1 299 -13 315 250 43 9 chr11 60596255 60596371 -90187182 - L1ME4a LINE L1 -13 6108 5989 458 297 111 42 chr11 60596472 60596717 -90186836 - MIR SINE MIR -1 261 3 415 290 77 19 chr11 60596717 60596924 -90186629 - L1ME4a LINE L1 -295 5826 5608 710 277 122 39 chr11 60598417 60598883 -90184670 - LTR33A LTR ERVL -8 515 11 229 162 0 0 chr11 60599050 60599087 -90184466 - L2 LINE L2 -14 3299 3263 670 254 230 33 chr11 60600518 60600944 -90182609 - L2 LINE L2 0 3313 2804 405 164 0 0 chr11 60601049 60601116 -90182437 + AluS SINE Alu 1 67 -244 2157 102 0 7 chr11 60601149 60601442 -90182111 + AluSg SINE Alu 4 294 -16 1925 115 3 48 chr11 60601595 60601907 -90181646 + AluSq SINE Alu 1 298 -15 1711 222 132 7 chr11 60602115 60602691 -90180862 + MER114 LTR ERV 1 648 0 207 0 0 0 chr11 60602895 60602918 -90180635 + (TG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr11 60602918 60602940 -90180613 + AT_rich Low_complexity Low_complexity 1 22 0 2140 132 0 0 chr11 60604215 60604511 -90179042 + AluSx SINE Alu 1 296 -16 319 169 0 17 chr11 60604677 60604736 -90178817 + MER94 DNA DNA 77 134 0 746 184 74 0 chr11 60604752 60604915 -90178638 - L2 LINE L2 -532 2782 2608 1938 158 0 3 chr11 60605271 60605581 -90177972 - AluJb SINE Alu 0 312 4 21 0 0 0 chr11 60605588 60605609 -90177944 + AT_rich Low_complexity Low_complexity 1 21 0 2329 109 3 0 chr11 60605916 60606227 -90177326 + AluSx SINE Alu 1 312 0 1462 187 28 21 chr11 60606954 60607273 -90176280 + AluJb SINE Alu 1 321 0 520 302 139 0 chr11 60607606 60607821 -90175732 - MIR SINE MIR -3 259 15 330 331 81 0 chr11 60607811 60607935 -90175618 + MIR3 SINE MIR 26 159 -49 * 536 193 115 10 chr11 60608306 60608498 -90175055 + L1MC5 LINE L1 7471 7682 -279 697 235 42 51 chr11 60608541 60608852 -90174701 + L1MC5 LINE L1 7629 7936 -25 2266 90 6 6 chr11 60608853 60609165 -90174388 + AluSp SINE Alu 1 312 -1 323 286 98 9 chr11 60610257 60610369 -90173184 + MIR SINE MIR 85 206 -56 1257 189 16 72 chr11 60612675 60612981 -90170572 - AluJo SINE Alu -23 289 1 200 290 76 76 chr11 60613775 60613999 -90169554 - L2 LINE L2 -4 3268 3045 408 221 147 29 chr11 60616514 60616650 -90166903 + MIR SINE MIR 89 240 -22 1956 112 10 14 chr11 60616886 60617182 -90166371 - AluSq SINE Alu -18 295 1 320 287 93 31 chr11 60618117 60618246 -90165307 + MIR3 SINE MIR 3 139 -69 21 0 0 0 chr11 60619255 60619276 -90164277 + AT_rich Low_complexity Low_complexity 1 21 0 327 197 192 48 chr11 60619811 60620019 -90163534 - L1MC5 LINE L1 -44 7917 7680 773 176 182 0 chr11 60620093 60620269 -90163284 - MER3 DNA MER1_type 0 209 2 402 156 117 0 chr11 60621865 60621942 -90161611 - AluSq/x SINE Alu -179 133 48 352 219 0 0 chr11 60622766 60622830 -90160723 - L2 LINE L2 -1 3312 3249 277 307 114 34 chr11 60622837 60623013 -90160540 - L2 LINE L2 -172 3141 2952 285 234 102 29 chr11 60623454 60623591 -90159962 + MER103 DNA DNA 11 157 -9 22 56 0 0 chr11 60624269 60624305 -90159248 + AT_rich Low_complexity Low_complexity 1 36 0 1685 160 38 14 chr11 60624593 60624886 -90158667 - AluJo SINE Alu -12 300 1 290 157 18 0 chr11 60625843 60625906 -90157647 - MLT1H LTR MaLR -11 584 479 466 227 26 13 chr11 60626114 60626268 -90157285 - L1M4 LINE L1 -1602 4544 4389 1173 244 88 8 chr11 60626576 60626949 -90156604 - L1ME3A LINE L1 -78 6092 5690 947 240 48 24 chr11 60626943 60627235 -90156318 - L1MB7 LINE L1 0 6184 5886 * 1417 123 36 5 chr11 60627258 60627478 -90156075 - ERVL LTR ERVL -1317 4447 4221 576 239 30 81 chr11 60627473 60627601 -90155952 - ERVL LTR ERVL -5274 490 374 * 1999 131 7 13 chr11 60627601 60627906 -90155647 - AluSx SINE Alu -7 305 3 576 239 30 81 chr11 60627906 60627974 -90155579 - ERVL LTR ERVL -5390 374 304 1243 166 62 72 chr11 60628016 60628279 -90155274 + L1MA7 LINE L1 5811 6072 -219 2155 173 68 0 chr11 60628279 60628678 -90154875 - MSTB LTR MaLR 0 426 1 1243 166 62 72 chr11 60628678 60628734 -90154819 + L1MA7 LINE L1 6072 6127 -164 286 109 0 18 chr11 60628842 60628897 -90154656 - Tigger3(Golem) DNA MER2_type -414 2615 2562 695 352 122 19 chr11 60629162 60629679 -90153874 + L2 LINE L2 2216 2785 -529 339 277 169 7 chr11 60630579 60630727 -90152826 + MIR SINE MIR 4 175 -87 1938 142 17 7 chr11 60631094 60631396 -90152157 - AluSx SINE Alu -7 305 1 13167 142 98 20 chr11 60631468 60633987 -90149566 - Tigger2 DNA MER2_type 0 2718 2 342 0 0 0 chr11 60634271 60634309 -90149244 + (TG)n Simple_repeat Simple_repeat 2 39 0 4135 217 120 40 chr11 60634310 60637446 -90146107 - L1MB5 LINE L1 -9 6663 3177 2197 117 0 3 chr11 60637446 60637744 -90145809 - AluSx SINE Alu -15 297 1 4135 217 120 40 chr11 60637744 60638126 -90145427 - L1MB5 LINE L1 -3495 3177 2827 288 239 102 0 chr11 60638128 60638216 -90145337 + MLT1C LTR MaLR 3 99 -368 324 73 0 0 chr11 60638226 60638267 -90145286 + MLT1C LTR MaLR 427 467 0 322 208 73 10 chr11 60638267 60638363 -90145190 + MLT1C-int LTR MaLR 3 104 -1267 1157 107 0 13 chr11 60638363 60638522 -90145031 + AluSp SINE Alu 148 304 -9 4364 209 72 42 chr11 60638525 60639628 -90143925 + MLT1C-int LTR MaLR 236 1371 0 1455 225 76 11 chr11 60639631 60640067 -90143486 + MLT1C LTR MaLR 4 467 0 2496 219 188 29 chr11 60640069 60640156 -90143397 - L1MB5 LINE L1 -3816 2828 2756 1219 138 81 0 chr11 60640156 60640366 -90143187 - MER30 DNA MER1_type 0 230 4 2496 219 188 29 chr11 60640366 60641572 -90141981 - L1MB5 LINE L1 -3888 2756 1297 1913 145 0 28 chr11 60641572 60641890 -90141663 - AluSq SINE Alu -4 309 1 2496 219 188 29 chr11 60641890 60641997 -90141556 - L1MB5 LINE L1 -5347 1297 1208 1211 114 129 0 chr11 60642023 60642233 -90141320 - L1PA16 LINE L1 -5 6161 5925 230 254 42 0 chr11 60642240 60642311 -90141242 - L1MB5 LINE L1 -5641 901 828 220 331 54 62 chr11 60642842 60642972 -90140581 + MIR3 SINE MIR 50 178 -30 25 51 0 0 chr11 60642975 60643014 -90140539 + AT_rich Low_complexity Low_complexity 1 39 0 443 282 153 11 chr11 60643242 60643504 -90140049 - L1MC4a LINE L1 -1888 5920 5622 263 302 158 5 chr11 60643341 60643543 -90140010 - L1PA8A LINE L1 -322 5809 5577 * 668 277 138 39 chr11 60643752 60644113 -90139440 - L1ME LINE L1 -335 5786 5390 2088 128 0 0 chr11 60644120 60644426 -90139127 - AluSg SINE Alu -4 306 1 240 368 0 0 chr11 60647155 60647250 -90136303 + GA-rich Low_complexity Low_complexity 2 96 0 837 93 78 0 chr11 60648514 60648643 -90134910 - MER85 DNA T2_type 0 139 1 869 206 66 47 chr11 60648653 60648998 -90134555 - MSTD LTR MaLR -4 392 1 595 256 82 18 chr11 60649406 60649625 -90133928 - MIR SINE MIR -27 235 3 425 278 38 22 chr11 60650088 60650276 -90133277 - MIR SINE MIR -4 258 67 351 202 155 47 chr11 60650606 60650735 -90132818 + MIR SINE MIR 88 230 -32 453 255 0 11 chr11 60651190 60651284 -90132269 + MER5A DNA MER1_type 12 104 -85 276 30 0 0 chr11 60652594 60652627 -90130926 + (TG)n Simple_repeat Simple_repeat 2 34 0 200 196 18 36 chr11 60653147 60653203 -90130350 - MER5A DNA MER1_type -36 153 99 350 323 202 0 chr11 60657594 60657792 -90125761 + MIR SINE MIR 13 250 -12 431 248 152 30 chr11 60660501 60660699 -90122854 - MIR SINE MIR 0 262 41 300 27 0 0 chr11 60661864 60661901 -90121652 + (CA)n Simple_repeat Simple_repeat 2 38 0 34 24 0 0 chr11 60662295 60662336 -90121217 + AT_rich Low_complexity Low_complexity 1 41 0 396 103 0 0 chr11 60663627 60663685 -90119868 + (TG)n Simple_repeat Simple_repeat 1 58 0 226 266 133 84 chr11 60664559 60664702 -90118851 - MIR SINE MIR -108 154 5 235 276 102 20 chr11 60664831 60664929 -90118624 + MIR SINE MIR 88 193 -69 334 309 63 34 chr11 60665354 60665529 -90118024 - MIR3 SINE MIR -19 189 10 2413 67 0 0 chr11 60665837 60666122 -90117431 + AluSg SINE Alu 1 285 -25 26 0 0 0 chr11 60666129 60666155 -90117398 + AT_rich Low_complexity Low_complexity 1 26 0 1939 103 76 60 chr11 60666292 60666340 -90117213 + THE1C LTR MaLR 1 47 -328 443 32 32 0 chr11 60666340 60666402 -90117151 + L1PA4 LINE L1 6092 6155 0 1939 103 76 60 chr11 60666402 60666722 -90116831 + THE1C LTR MaLR 47 375 0 608 233 55 0 chr11 60666892 60667038 -90116515 - MIR SINE MIR 0 262 109 205 331 69 75 chr11 60667161 60667573 -90115980 - L2 LINE L2 -213 3059 2597 257 293 146 8 chr11 60667598 60667721 -90115832 - L2 LINE L2 -56 3257 3118 253 380 9 0 chr11 60668125 60668233 -90115320 - L2 LINE L2 -357 2956 2848 1187 193 49 4 chr11 60668244 60668487 -90115066 - MER90 LTR ERV1 0 614 361 472 293 49 38 chr11 60668483 60668731 -90114822 - MER90 LTR ERV1 -361 228 4 * 888 268 4 31 chr11 60668868 60669129 -90114424 + MER90 LTR ERV1 361 614 0 319 294 18 18 chr11 60669136 60669245 -90114308 - L2 LINE L2 -558 2756 2648 2470 66 3 0 chr11 60669667 60669972 -90113581 + AluSc SINE Alu 1 306 -3 208 93 23 23 chr11 60670061 60670104 -90113449 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 360 296 148 48 chr11 60670517 60670706 -90112847 - MIR SINE MIR -50 212 5 201 375 31 0 chr11 60670721 60670785 -90112768 + L2 LINE L2 3119 3184 -88 716 193 187 5 chr11 60671125 60671312 -90112241 - MER58A DNA MER1_type -1 223 3 547 158 16 47 chr11 60671368 60671495 -90112058 - L1M4 LINE L1 -984 5162 5040 583 313 34 14 chr11 60673966 60674174 -90109379 - MIR SINE MIR -35 227 16 396 269 34 8 chr11 60674223 60674342 -90109211 - MIR SINE MIR -35 227 106 327 327 58 0 chr11 60675007 60675111 -90108442 - MIR SINE MIR -122 140 31 292 335 127 23 chr11 60675344 60675517 -90108036 + MIR SINE MIR 47 237 -25 226 193 18 0 chr11 60676329 60676386 -90107167 - L1ME4a LINE L1 -104 6017 5960 322 276 9 19 chr11 60676463 60676568 -90106985 - MIR SINE MIR -67 141 38 262 308 19 28 chr11 60677037 60677144 -90106409 + MIR SINE MIR 34 139 -123 5208 159 10 14 chr11 60677292 60678215 -90105338 - MER49 LTR ERV1 0 923 5 207 0 0 0 chr11 60678556 60678579 -90104974 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 954 220 157 29 chr11 60678831 60679213 -90104340 + MER110A LTR ERV1 1 431 -37 2079 185 31 5 chr11 60679494 60679942 -90103611 - L1MA4 LINE L1 -48 6252 5793 207 0 0 0 chr11 60679943 60679966 -90103587 + (TA)n Simple_repeat Simple_repeat 2 24 0 189 0 0 0 chr11 60680066 60680087 -90103466 + (A)n Simple_repeat Simple_repeat 1 21 0 2147 161 28 2 chr11 60680087 60680484 -90103069 + LTR45 LTR ERV1 117 523 -2 4534 223 17 16 chr11 60680577 60681996 -90101557 - L1 LINE L1 -3912 2416 993 568 141 7 3 chr11 60681999 60682099 -90101454 - MER61D LTR ERV1 0 501 333 371 75 12 38 chr11 60682115 60682195 -90101358 + (TTAA)n Simple_repeat Simple_repeat 1 78 0 1277 169 182 0 chr11 60682236 60682566 -90100987 - MER61C LTR ERV1 -60 374 1 3156 143 17 14 chr11 60682567 60683340 -90100213 - MER61C-int LTR ERV1 -1 6938 3508 2997 168 12 20 chr11 60683337 60684658 -90098895 - HUERS-P2 LTR ERV1 -389 4828 617 * 268 258 11 110 chr11 60684643 60684759 -90098794 - HUERS-P2 LTR ERV1 -6243 848 755 * 381 213 0 0 chr11 60684759 60684834 -90098719 - MADE1 DNA Mariner -1 79 5 268 258 11 110 chr11 60684834 60684899 -90098654 - HUERS-P2 LTR ERV1 -6336 755 685 647 148 88 97 chr11 60684926 60685142 -90098411 - HUERS-P2 LTR ERV1 -4763 454 241 254 319 30 66 chr11 60685151 60685317 -90098236 - HUERS-P2 LTR ERV1 -2518 570 411 2114 170 51 5 chr11 60685579 60686009 -90097544 - MER61C LTR ERV1 0 434 1 4181 186 68 25 chr11 60686010 60686960 -90096593 - L1 LINE L1 -4336 992 2 530 241 18 18 chr11 60686964 60687130 -90096423 - L1MEc LINE L1 -3534 2681 2516 354 310 28 35 chr11 60687151 60687296 -90096257 - L1MEc LINE L1 -4928 1468 1325 417 332 66 41 chr11 60687364 60688018 -90095535 + MER110-int LTR ERV1 2426 3095 -1552 1590 212 13 35 chr11 60688529 60688902 -90094651 + MLT1A1 LTR MaLR 1 365 0 708 316 39 28 chr11 60689552 60689983 -90093570 + L1MCc LINE L1 21 456 -5967 2303 153 22 5 chr11 60690247 60690658 -90092895 - MSTB1 LTR MaLR 0 432 15 1042 193 9 13 chr11 60690679 60690907 -90092646 - MSTB1-int LTR MaLR 0 1651 1425 428 221 141 34 chr11 60690938 60691087 -90092466 + L1MCc LINE L1 785 949 -5474 778 156 8 8 chr11 60691410 60691538 -90092015 - FLAM_A SINE Alu -1 132 5 443 289 25 10 chr11 60691997 60692194 -90091359 + L1MCc LINE L1 10 209 -6214 408 309 58 27 chr11 60692220 60692388 -90091165 - MIR SINE MIR -27 181 3 238 268 134 0 chr11 60692546 60692643 -90090910 - MIR3 SINE MIR 0 208 99 802 215 16 39 chr11 60693998 60694254 -90089299 + L1MA9 LINE L1 6025 6274 -38 425 192 77 29 chr11 60695036 60695140 -90088413 - AluJo SINE Alu -8 304 196 1049 216 16 5 chr11 60695434 60695628 -90087925 - AluJo SINE Alu -116 196 1 277 344 46 15 chr11 60696222 60696353 -90087200 - L2 LINE L2 0 3313 3179 260 138 69 0 chr11 60696362 60696420 -90087133 + L1MA8 LINE L1 6230 6291 0 928 128 18 0 chr11 60696825 60696989 -90086564 + CT-rich Low_complexity Low_complexity 3 169 0 573 283 113 35 chr11 60697000 60697318 -90086235 - L1MEc LINE L1 -6012 384 42 809 158 22 0 chr11 60697321 60697460 -90086093 - MER50 LTR ERV1 -24 710 569 2294 118 0 0 chr11 60697460 60697766 -90085787 + AluSg SINE Alu 1 306 -4 195 42 0 0 chr11 60697771 60697795 -90085758 + (A)n Simple_repeat Simple_repeat 1 24 0 225 342 24 27 chr11 60698010 60698308 -90085245 + AluSc SINE Alu 3 299 0 2153 181 14 25 chr11 60698308 60698740 -90084813 - MER50 LTR ERV1 -156 578 152 4775 158 22 12 chr11 60698740 60699675 -90083878 + MER50-int LTR ERV1 201 1225 -5980 709 154 0 0 chr11 60699710 60699853 -90083700 + MER50-int LTR ERV1 1004 1111 -3769 * 1628 118 95 0 chr11 60699850 60700112 -90083441 + MER50-int LTR ERV1 6911 7197 -8 3404 179 14 21 chr11 60700112 60700827 -90082726 + MER50 LTR ERV1 1 710 -24 644 294 20 0 chr11 60701359 60701556 -90081997 - MIR SINE MIR -3 259 59 313 365 101 0 chr11 60702016 60702205 -90081348 - MIR SINE MIR -7 255 48 208 139 0 0 chr11 60702557 60702593 -90080960 + (TA)n Simple_repeat Simple_repeat 2 37 0 509 112 90 0 chr11 60703637 60703726 -90079827 + MER4A LTR ERV1 1 97 -567 367 189 33 56 chr11 60703770 60703860 -90079693 + MER4A LTR ERV1 372 459 -205 1307 149 14 0 chr11 60703873 60704094 -90079459 + MER4B LTR ERV1 381 604 -6 1112 47 160 0 chr11 60704104 60704273 -90079280 + MER4B-int LTR ERV1 1 196 -6402 499 14 28 28 chr11 60704279 60704350 -90079203 - LTR10C LTR ERV1 -520 71 1 409 187 8 32 chr11 60704355 60704478 -90079075 + MER4B-int LTR ERV1 498 617 -5981 352 100 0 0 chr11 60704604 60704654 -90078899 + MER4B-int LTR ERV1 837 886 -5712 * 1391 59 38 164 chr11 60704652 60704989 -90078564 + MER4B-int LTR ERV1 503 739 -4276 3478 89 62 38 chr11 60704999 60705706 -90077847 + MER4B-int LTR ERV1 1771 2494 -4104 1250 172 57 4 chr11 60705707 60705951 -90077602 - LTR8 LTR ERV1 -434 257 1 2299 120 94 36 chr11 60705951 60706502 -90077051 + MER4B-int LTR ERV1 2737 3319 -3279 * 13242 99 61 73 chr11 60706499 60709206 -90074347 + MER4B-int LTR ERV1 3916 6590 -8 379 187 88 11 chr11 60709219 60709310 -90074243 + MER4B LTR ERV1 1 98 -566 1502 154 3 82 chr11 60709350 60709668 -90073885 + MER4A LTR ERV1 372 664 0 452 312 50 0 chr11 60710387 60710608 -90072945 + L1ME LINE L1 5592 5823 -298 344 360 13 99 chr11 60711089 60711461 -90072092 - L2 LINE L2 -17 3255 2916 2358 116 24 14 chr11 60711486 60711857 -90071696 - THE1C LTR MaLR 0 375 1 1641 119 12 56 chr11 60712030 60712350 -90071203 - L1MA8 LINE L1 -134 6157 5852 466 190 26 9 chr11 60712359 60712475 -90071078 + L1MA8 LINE L1 6174 6291 0 22 35 0 0 chr11 60712630 60712659 -90070894 + AT_rich Low_complexity Low_complexity 1 29 0 1212 119 107 0 chr11 60713120 60713364 -90070189 + L1MA4A LINE L1 6033 6302 -1 422 318 29 12 chr11 60714026 60714196 -90069357 + MIR SINE MIR 63 235 -27 319 278 0 33 chr11 60714220 60714310 -90069243 - MLT1H LTR MaLR -75 474 388 4079 85 12 5 chr11 60714882 60715459 -90068094 - LTR10C LTR ERV1 0 591 11 452 325 173 10 chr11 60715826 60716121 -90067432 + L2 LINE L2 2619 2961 -353 180 281 90 56 chr11 60716716 60716805 -90066748 - L2 LINE L2 -45 3227 3136 989 187 22 118 chr11 60717507 60717950 -90065603 - MLT1A1 LTR MaLR -2 363 1 1475 170 0 0 chr11 60718062 60718297 -90065256 - AluSg/x SINE Alu -6 304 70 1473 103 33 0 chr11 60718297 60718510 -90065043 + LTR22A LTR ERVK 239 458 0 4901 115 31 14 chr11 60718517 60719846 -90063707 - L1PBa LINE L1 -4729 2134 634 1021 173 5 0 chr11 60719846 60720043 -90063510 - L1PBa LINE L1 -6663 200 3 3479 248 97 21 chr11 60720055 60720685 -90062868 - L1PBb LINE L1 -3086 3117 2536 324 48 0 0 chr11 60720685 60720727 -90062826 - L1PA12 LINE L1 -4 6164 6123 3479 248 97 21 chr11 60720727 60722247 -90061306 - L1PBb LINE L1 -3667 2536 770 728 205 0 0 chr11 60723551 60723673 -90059880 - FLAM_C SINE Alu -18 125 4 412 337 40 56 chr11 60723806 60723874 -90059679 + L1MEd LINE L1 943 1011 -1479 1954 107 47 30 chr11 60723874 60724172 -90059381 + AluSc SINE Alu 1 303 -6 412 337 40 56 chr11 60724172 60724705 -90058848 + L1MEd LINE L1 1011 1644 -846 2120 102 9 49 chr11 60724720 60725045 -90058508 - AluSq SINE Alu 0 313 2 407 206 37 37 chr11 60725245 60725381 -90058172 - L1ME1 LINE L1 -254 5912 5777 30258 34 3 3 chr11 60725691 60730097 -90053456 + L1PA3 LINE L1 1749 6152 -3 21 57 0 0 chr11 60730371 60730406 -90053147 + AT_rich Low_complexity Low_complexity 1 35 0 29 28 0 0 chr11 60730582 60730618 -90052935 + AT_rich Low_complexity Low_complexity 1 36 0 1508 139 16 4 chr11 60730625 60730876 -90052677 - L1MA4 LINE L1 -20 6280 6027 285 234 251 45 chr11 60730885 60731106 -90052447 - L1MC4a LINE L1 -1631 6177 6003 2647 45 0 3 chr11 60731106 60731420 -90052133 - AluYb8 SINE Alu -5 313 1 285 234 251 45 chr11 60731420 60731552 -90052001 - L1MC4a LINE L1 -1805 6003 5751 1450 222 207 17 chr11 60731652 60732057 -90051496 - MLT2B1 LTR ERVL -37 483 2 23 0 0 0 chr11 60732237 60732260 -90051293 + AT_rich Low_complexity Low_complexity 1 23 0 2002 139 7 0 chr11 60732471 60732766 -90050787 - AluSx SINE Alu -13 299 3 303 327 51 32 chr11 60733440 60733657 -90049896 + L1ME LINE L1 5550 5770 -351 421 231 74 98 chr11 60734140 60734343 -90049210 - MLT1H LTR MaLR -351 198 1 194 0 0 37 chr11 60735028 60735055 -90048498 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2651 137 30 24 chr11 60735066 60735525 -90048028 + L1MA8 LINE L1 5827 6288 -3 273 292 34 11 chr11 60735676 60735765 -90047788 - MIR3 SINE MIR -21 187 97 234 357 7 43 chr11 60736125 60736265 -90047288 + MIR SINE MIR 15 149 -113 236 329 122 38 chr11 60736394 60736552 -90047001 + MIR SINE MIR 6 188 -74 2917 119 73 7 chr11 60736552 60737006 -90046547 + MER31A LTR ERV1 2 485 0 236 329 122 38 chr11 60737006 60737060 -90046493 + MIR SINE MIR 188 236 -26 359 244 102 63 chr11 60737497 60737624 -90045929 - L2 LINE L2 -7 3265 3134 2010 135 3 3 chr11 60737667 60737949 -90045604 + AluSx SINE Alu 1 282 -30 1696 171 13 32 chr11 60738913 60739229 -90044324 + AluJo SINE Alu 1 310 -2 769 173 8 30 chr11 60739266 60739399 -90044154 + AluJo SINE Alu 1 130 -172 2781 240 55 74 chr11 60739474 60740390 -90043163 + L1M4 LINE L1 1 898 -5644 410 165 38 0 chr11 60740390 60740469 -90043084 + L1MB7 LINE L1 6087 6168 -16 260 310 140 40 chr11 60741421 60741621 -90041932 - L3 LINE CR1 -63 1514 1295 207 224 0 0 chr11 60741706 60741755 -90041798 - MIR SINE MIR -30 232 184 3523 69 30 0 chr11 60741755 60742191 -90041362 - L1PA7 LINE L1 -4 6150 5702 21593 97 13 3 chr11 60742192 60745546 -90038007 - L1PA7 LINE L1 -521 5633 2246 3179 290 29 14 chr11 60745543 60746478 -90037075 - L1PA12 LINE L1 -6004 1577 629 * 5056 191 23 14 chr11 60746485 60747951 -90035602 + L1PA16 LINE L1 2148 3621 -3228 2978 153 20 0 chr11 60747961 60748452 -90035101 + L1PA16 LINE L1 6340 6840 -29 804 176 65 0 chr11 60748467 60748620 -90034933 + AluJo SINE Alu 136 298 -14 1163 12 42 0 chr11 60748623 60748788 -90034765 + (TAGA)n Simple_repeat Simple_repeat 2 173 0 454 198 11 0 chr11 60749237 60749328 -90034225 + L1PA16 LINE L1 6061 6152 -14 847 150 71 0 chr11 60749328 60749468 -90034085 + AluJo SINE Alu 139 288 -24 868 46 58 17 chr11 60749475 60749648 -90033905 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 281 47 23 0 chr11 60749654 60749697 -90033856 + (CATAG)n Simple_repeat Simple_repeat 2 45 0 622 220 330 16 chr11 60749727 60750045 -90033508 - L2 LINE L2 -410 2904 2487 398 286 163 10 chr11 60750045 60750241 -90033312 + LTR16B LTR ERVL 1 226 -238 369 286 95 0 chr11 60750291 60750417 -90033136 + LTR16B LTR ERVL 323 460 -4 193 229 100 14 chr11 60750417 60750487 -90033066 - L2 LINE L2 -833 2481 2406 1329 218 28 0 chr11 60750974 60751259 -90032294 - LTR51 LTR ERV1 -154 517 225 1821 177 17 23 chr11 60751312 60751657 -90031896 - MER61A LTR ERV1 0 343 1 284 250 98 18 chr11 60751784 60751896 -90031657 - MER101B LTR ERV1 -448 122 2 484 202 0 0 chr11 60752095 60752184 -90031369 + MER49 LTR ERV1 594 682 -241 22 56 0 0 chr11 60752411 60752447 -90031106 + AT_rich Low_complexity Low_complexity 1 36 0 2006 140 3 3 chr11 60752515 60752808 -90030745 + AluSx SINE Alu 1 293 -19 356 314 24 35 chr11 60752860 60753029 -90030524 + L1MC/D LINE L1 5408 5574 -2234 840 272 73 30 chr11 60753141 60753582 -90029971 + Charlie4a DNA MER1_type 32 491 -17 4743 161 44 50 chr11 60753790 60754402 -90029151 - MER49 LTR ERV1 0 923 316 2206 114 3 19 chr11 60754402 60754719 -90028834 - AluSx SINE Alu 0 312 1 4743 161 44 50 chr11 60754719 60755030 -90028523 - MER49 LTR ERV1 -607 316 5 376 323 62 18 chr11 60755292 60755518 -90028035 - HAL1b LINE L1 -614 734 499 1330 117 0 0 chr11 60755532 60755720 -90027833 + MER51A LTR ERV1 1 188 -446 1959 189 255 15 chr11 60755736 60757706 -90025847 + SATR1 Satellite Satellite 1 2443 -154 2238 49 46 7 chr11 60757710 60757994 -90025559 - AluY SINE Alu -16 295 1 1195 197 216 71 chr11 60758016 60758986 -90024567 + SATR1 Satellite Satellite 1 1111 -1 1022 186 365 0 chr11 60759079 60759413 -90024140 + SATR1 Satellite Satellite 14 469 -1 1099 201 278 0 chr11 60759502 60759936 -90023617 + SATR1 Satellite Satellite 1 554 -51 1175 210 153 89 chr11 60759977 60760606 -90022947 + SATR1 Satellite Satellite 1 668 -2 2591 165 113 15 chr11 60760617 60764761 -90018792 + SATR1 Satellite Satellite 1 4548 -219 2170 131 8 29 chr11 60764777 60765153 -90018400 + MER51A LTR ERV1 281 640 0 329 274 124 32 chr11 60765155 60765341 -90018212 - HAL1b LINE L1 -864 484 282 2089 98 0 35 chr11 60765415 60765733 -90017820 - AluY SINE Alu -4 307 1 862 223 206 21 chr11 60766631 60766913 -90016640 + MER77 LTR ERV1 16 349 -256 4696 174 46 38 chr11 60768870 60769995 -90013558 + L1MB2 LINE L1 5040 6167 -4 2055 115 11 0 chr11 60770085 60770386 -90013167 + AluSx SINE Alu 1 304 0 867 265 92 17 chr11 60770446 60770684 -90012869 - MIR SINE MIR 0 262 7 459 313 120 10 chr11 60770941 60771149 -90012404 + MIR SINE MIR 8 238 -24 484 332 74 9 chr11 60771201 60771430 -90012123 + L3 LINE CR1 1252 1495 -82 1939 154 54 43 chr11 60772432 60772803 -90010750 - THE1C LTR MaLR 0 375 1 445 273 181 0 chr11 60773266 60773482 -90010071 - MLT1H1 LTR MaLR 0 555 301 259 217 67 0 chr11 60773558 60773618 -90009935 - MLT1H1 LTR MaLR -367 182 119 6603 194 23 38 chr11 60773814 60775448 -90008105 + L1M3f LINE L1 4 1660 -4668 2014 163 3 0 chr11 60775448 60775754 -90007799 + AluSx SINE Alu 1 307 -5 6603 194 23 38 chr11 60775754 60776060 -90007493 + L1M3f LINE L1 1660 1969 -4359 1417 192 34 64 chr11 60776060 60776357 -90007196 - AluJo SINE Alu -24 288 1 6603 194 23 38 chr11 60776357 60778238 -90005315 + L1M3f LINE L1 1969 3986 -2342 11261 116 30 5 chr11 60778243 60780039 -90003514 + L1PBa LINE L1 3 1843 -5020 475 90 0 0 chr11 60780032 60780099 -90003454 + THE1B-int LTR MaLR 364 430 -1150 * 7474 122 15 11 chr11 60780141 60781286 -90002267 + THE1B-int LTR MaLR 431 1580 0 1119 110 0 0 chr11 60781286 60781440 -90002113 + THE1B LTR MaLR 1 154 -210 608 155 17 17 chr11 60781438 60781567 -90001986 + THE1B LTR MaLR 237 364 0 * 2214 121 0 0 chr11 60781567 60781890 -90001663 + THE1B-int LTR MaLR 1 323 -1257 476 62 0 0 chr11 60781890 60781955 -90001598 + L1M1 LINE L1 5710 5774 -529 198 0 0 0 chr11 60782113 60782135 -90001418 + (T)n Simple_repeat Simple_repeat 1 22 0 553 161 9 18 chr11 60782135 60782247 -90001306 - LTR45 LTR ERV1 -402 123 13 1569 174 84 42 chr11 60782441 60782798 -90000755 + THE1C LTR MaLR 2 373 -2 346 292 14 7 chr11 60782977 60783124 -90000429 - MER65-int LTR ERV1 -408 6393 4212 617 272 145 22 chr11 60783754 60783982 -89999571 - MIR SINE MIR -5 257 2 308 234 213 0 chr11 60784045 60784139 -89999414 + L2 LINE L2 3189 3302 -11 954 145 6 0 chr11 60784351 60784530 -89999023 + L1MA4 LINE L1 6094 6273 -27 432 297 109 0 chr11 60785876 60786014 -89997539 + MIR SINE MIR 19 171 -91 14087 139 14 16 chr11 60786022 60788482 -89995071 + L1P LINE L1 12 2466 -3680 227 286 0 0 chr11 60788488 60788579 -89994974 + L1MC4 LINE L1 6613 6703 -1339 * 235 239 23 0 chr11 60788501 60788589 -89994964 - L1MC4 LINE L1 -1339 6703 6614 313 179 0 0 chr11 60788619 60788675 -89994878 - L1MC4 LINE L1 -1339 6703 6648 20996 80 0 0 chr11 60788677 60792371 -89991182 + L1PA6 LINE L1 2447 6151 -3 26 30 0 0 chr11 60792435 60792468 -89991085 + AT_rich Low_complexity Low_complexity 1 33 0 311 336 27 34 chr11 60792516 60792665 -89990888 - MIR SINE MIR -111 151 4 221 332 96 64 chr11 60792798 60792985 -89990568 + MIR SINE MIR 20 212 -50 739 312 89 23 chr11 60793198 60793840 -89989713 - L2 LINE L2 -17 3296 2613 228 312 177 0 chr11 60794116 60794257 -89989296 + MIR SINE MIR 26 191 -71 592 276 106 9 chr11 60794288 60794505 -89989048 - MIR SINE MIR -8 254 17 26 64 0 0 chr11 60795751 60795798 -89987755 + AT_rich Low_complexity Low_complexity 1 47 0 3745 209 29 28 chr11 60795807 60797258 -89986295 - L1MA9 LINE L1 -25 6287 4833 26 50 0 0 chr11 60797630 60797670 -89985883 + AT_rich Low_complexity Low_complexity 1 40 0 800 289 10 0 chr11 60797780 60797984 -89985569 + MIR SINE MIR 57 262 0 228 257 0 0 chr11 60798390 60798460 -89985093 + (TA)n Simple_repeat Simple_repeat 2 71 0 247 186 0 0 chr11 60798475 60798534 -89985019 - L1MC4 LINE L1 -1338 6704 6646 631 247 25 0 chr11 60798644 60798806 -89984747 - L1ME1 LINE L1 -9 6157 5992 723 235 35 5 chr11 60798809 60799009 -89984544 + MER92B LTR ERV1 106 311 -325 749 200 6 10 chr11 60799122 60799296 -89984257 + MER92B LTR ERV1 45 145 -267 467 195 41 8 chr11 60799322 60799445 -89984108 + MER92B LTR ERV1 463 589 -47 731 208 0 7 chr11 60799630 60799779 -89983774 + MLT2F LTR ERVL 1 148 -515 1596 98 70 8 chr11 60799821 60800065 -89983488 + THE1B-int LTR MaLR 1322 1580 0 1811 147 14 49 chr11 60800067 60800301 -89983252 + THE1B LTR MaLR 3 223 -141 2234 90 3 23 chr11 60800301 60800611 -89982942 + AluY SINE Alu 1 304 -7 1811 147 14 49 chr11 60800611 60800723 -89982830 + THE1B LTR MaLR 223 337 -27 239 378 67 0 chr11 60801742 60801861 -89981692 + L2 LINE L2 3146 3272 0 453 196 39 10 chr11 60801950 60802052 -89981501 + MLT1A1 LTR MaLR 5 109 -256 344 106 0 0 chr11 60802084 60802131 -89981422 + MLT1A1 LTR MaLR 319 365 0 4198 122 3 3 chr11 60802382 60803029 -89980524 + L1PB2 LINE L1 5505 6151 0 23 0 0 0 chr11 60803584 60803607 -89979946 + AT_rich Low_complexity Low_complexity 1 23 0 192 333 0 48 chr11 60803730 60803814 -89979739 + MIR SINE MIR 50 129 -79 1226 154 5 5 chr11 60804146 60804360 -89979193 + L1PA14 LINE L1 5939 6152 -9 2417 234 14 65 chr11 60805076 60805556 -89977997 + L1PA12 LINE L1 2098 2601 -4980 1591 193 42 0 chr11 60805556 60805821 -89977732 + AluSx SINE Alu 3 278 -34 2116 130 13 47 chr11 60805823 60806207 -89977346 + THE1C LTR MaLR 5 375 0 2417 234 14 65 chr11 60806207 60806495 -89977058 + L1PA12 LINE L1 2602 2830 -4751 573 229 85 52 chr11 60806583 60806982 -89976571 + LTR30 LTR ERV1 115 596 0 3796 270 20 29 chr11 60806982 60809076 -89974477 + HERV3 LTR ERV1 1 2353 -6073 6145 250 19 30 chr11 60809083 60810845 -89972708 + HERV3 LTR ERV1 3508 5250 -3176 4328 248 24 38 chr11 60810846 60812204 -89971349 + HERV3 LTR ERV1 5622 6960 -1775 273 172 31 0 chr11 60812204 60812268 -89971285 + HERV3 LTR ERV1 5705 5770 -1126 493 333 0 0 chr11 60812298 60812466 -89971087 + HERV3 LTR ERV1 7550 7717 -709 2085 312 4 6 chr11 60812535 60813224 -89970329 + HERV3 LTR ERV1 7736 8423 -3 635 241 101 39 chr11 60813316 60813692 -89969861 + LTR30 LTR ERV1 108 471 -22 9992 230 29 47 chr11 60813703 60815879 -89967674 + L1PA12 LINE L1 2816 5031 -2553 2239 137 19 6 chr11 60815879 60816238 -89967315 - THE1B LTR MaLR 0 364 1 9861 123 46 4 chr11 60816238 60817753 -89965800 - THE1B-int LTR MaLR 0 1580 2 2292 138 8 27 chr11 60817754 60818125 -89965428 - THE1B LTR MaLR 0 364 1 9992 230 29 47 chr11 60818125 60818803 -89964750 + L1PA12 LINE L1 5030 5582 -2002 1772 171 10 14 chr11 60818803 60819095 -89964458 + AluSx SINE Alu 5 295 -17 9992 230 29 47 chr11 60819095 60819566 -89963987 + L1PA12 LINE L1 5582 6060 -1524 4672 230 51 14 chr11 60819567 60821026 -89962527 + L1 LINE L1 2466 3977 -2169 6632 149 27 21 chr11 60821026 60822268 -89961285 - HSMAR2 DNA Mariner -2 1300 51 1742 168 0 0 chr11 60822272 60822546 -89961007 - AluJb SINE Alu -4 308 35 216 0 0 0 chr11 60822572 60822596 -89960957 + (T)n Simple_repeat Simple_repeat 1 24 0 1077 298 31 45 chr11 60823877 60824391 -89959162 - L2 LINE L2 -503 2811 2305 1754 180 3 0 chr11 60824564 60824875 -89958678 - AluSq SINE Alu 0 312 1 182 297 76 68 chr11 60825777 60825895 -89957658 - L2 LINE L2 -181 3091 2973 277 263 182 0 chr11 60826478 60826577 -89956976 - MIR SINE MIR -70 192 76 327 250 68 38 chr11 60826733 60826780 -89956773 - MER5A DNA MER1_type -2 187 143 207 0 0 0 chr11 60826780 60826803 -89956750 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 327 250 68 38 chr11 60826803 60826887 -89956666 - MER5A DNA MER1_type -46 143 52 349 280 8 42 chr11 60826931 60827049 -89956504 - MER5A DNA MER1_type -22 167 54 425 237 35 9 chr11 60828472 60828586 -89954967 - Charlie7 DNA MER1_type -2470 142 26 201 222 0 32 chr11 60828851 60828914 -89954639 + L2 LINE L2 3159 3219 -94 307 226 2 94 chr11 60829128 60829243 -89954310 + MIR SINE MIR 66 172 -36 2256 87 7 3 chr11 60829415 60829713 -89953840 - AluY SINE Alu -12 299 1 252 149 0 0 chr11 60830672 60830719 -89952834 + (TG)n Simple_repeat Simple_repeat 2 48 0 1932 229 60 68 chr11 60831733 60832111 -89951442 - LTR9 LTR ERV1 -1 611 238 1949 126 10 17 chr11 60832111 60832413 -89951140 + AluSg1 SINE Alu 1 300 -9 1932 229 60 68 chr11 60832413 60832650 -89950903 - LTR9 LTR ERV1 -374 238 1 550 247 44 19 chr11 60832736 60832894 -89950659 + MLT1B LTR MaLR 229 390 0 249 347 74 8 chr11 60833948 60834069 -89949484 + L2 LINE L2 2934 3062 -210 327 300 92 25 chr11 60834616 60834736 -89948817 + L2 LINE L2 3144 3271 -1 331 228 0 54 chr11 60835687 60835779 -89947774 - MER5A DNA MER1_type -1 188 102 307 314 134 9 chr11 60836231 60836454 -89947099 + LTR34 LTR ERV1 268 518 -181 449 117 65 0 chr11 60836648 60836725 -89946828 + L1PA16 LINE L1 5989 6070 -96 545 288 41 87 chr11 60837246 60837683 -89945870 + L1MC/D LINE L1 3071 3487 -2659 1844 157 0 10 chr11 60837711 60838024 -89945529 - L1PA16 LINE L1 -293 5873 5564 1725 158 20 10 chr11 60838024 60838321 -89945232 + L1PA16 LINE L1 5863 6163 -3 349 285 108 54 chr11 60838421 60839344 -89944209 + L1P LINE L1 3653 4614 -1532 457 331 60 44 chr11 60839610 60840042 -89943511 + L1MC/D LINE L1 4806 5244 -902 1107 306 68 19 chr11 60840047 60840587 -89942966 + L1MC/D LINE L1 5255 5821 -1987 188 67 33 0 chr11 60840731 60840761 -89942792 + (GGAGA)n Simple_repeat Simple_repeat 4 34 0 490 240 129 35 chr11 60841657 60841828 -89941725 - MIR SINE MIR -28 234 48 236 308 69 8 chr11 60841866 60841996 -89941557 + MIR SINE MIR 99 236 -26 1812 174 0 7 chr11 60842039 60842332 -89941221 - AluJb SINE Alu -21 291 1 516 291 6 44 chr11 60843033 60843215 -89940338 - MIR SINE MIR -2 260 86 364 280 120 29 chr11 60843413 60843588 -89939965 - MIR SINE MIR -52 210 20 9850 63 6 0 chr11 60843748 60845004 -89938549 - L1PA6 LINE L1 -1702 4444 3182 7522 54 8 1 chr11 60845004 60846676 -89936877 + L1PA6 LINE L1 4448 6153 -1 186 332 126 60 chr11 60846944 60847143 -89936410 + MIR SINE MIR 48 259 -3 207 0 0 0 chr11 60847584 60847607 -89935946 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2444 80 0 0 chr11 60848107 60848418 -89935135 + AluY SINE Alu 1 311 0 1205 184 126 16 chr11 60848456 60848765 -89934788 - L1MB4 LINE L1 -52 6128 5786 1277 146 0 24 chr11 60849157 60849363 -89934190 - MER57B-int LTR ERV1 -5457 489 289 * 3836 178 40 1 chr11 60849358 60850004 -89933549 - MER57B-int LTR ERV1 -6862 675 5 2806 149 9 0 chr11 60850008 60850438 -89933115 - MER57B LTR ERV1 0 434 1 1211 268 149 0 chr11 60850438 60850833 -89932720 + L2 LINE L2 1763 2216 -1098 44000 47 4 2 chr11 60850842 60857004 -89926549 + L1PA4 LINE L1 1 6155 0 781 324 19 23 chr11 60857008 60857317 -89926236 + L2 LINE L2 2216 2523 -791 919 180 12 0 chr11 60857318 60857479 -89926074 + LTR40a LTR ERVL 2 164 -355 771 274 117 0 chr11 60857477 60857700 -89925853 + LTR40a LTR ERVL 271 519 0 * 569 319 55 45 chr11 60857722 60858102 -89925451 + L2 LINE L2 2661 3088 -225 1177 159 31 48 chr11 60858149 60858376 -89925177 - AluJo SINE Alu -19 293 71 5703 117 77 5 chr11 60858376 60859273 -89924280 - LOR1b-int LTR ERV1 -6956 1164 203 2002 154 51 8 chr11 60859282 60859638 -89923915 - LOR1b-int LTR ERV1 -7749 371 1 2099 215 45 2 chr11 60859638 60860080 -89923473 - LOR1b LTR ERV1 0 461 1 234 250 0 19 chr11 60862675 60862727 -89920826 - MIR SINE MIR -137 71 21 672 210 4 129 chr11 60863108 60863356 -89920197 - L1MA10 LINE L1 0 6334 6118 10743 232 14 15 chr11 60863435 60866309 -89917244 + L1 LINE L1 1 2854 -4253 9984 205 42 8 chr11 60866311 60868835 -89914718 + L1 LINE L1 3681 6311 -795 22 0 0 0 chr11 60869780 60869802 -89913751 + AT_rich Low_complexity Low_complexity 1 22 0 228 130 0 0 chr11 60870327 60870373 -89913180 + (T)n Simple_repeat Simple_repeat 1 46 0 225 0 0 0 chr11 60870623 60870648 -89912905 + (T)n Simple_repeat Simple_repeat 1 25 0 821 214 6 6 chr11 60870709 60870877 -89912676 + L1 LINE L1 4001 4168 -1978 4925 179 10 0 chr11 60870899 60871690 -89911863 + L1PA15-16 LINE L1 1 799 -6050 2753 101 5 27 chr11 60871692 60872100 -89911453 + MLT2A1 LTR ERVL 1 399 -45 25 31 0 0 chr11 60872144 60872176 -89911377 + AT_rich Low_complexity Low_complexity 1 32 0 4309 226 33 16 chr11 60872226 60873165 -89910388 + L1PA15-16 LINE L1 734 1637 -5212 5984 220 22 33 chr11 60873170 60874009 -89909544 - MSTB-int LTR MaLR -340 1311 464 2017 102 55 0 chr11 60874009 60874284 -89909269 + AluSq SINE Alu 1 290 -23 5984 220 22 33 chr11 60874284 60874445 -89909108 - MSTB-int LTR MaLR -1187 464 303 5108 108 15 26 chr11 60874445 60875175 -89908378 - LTR30 LTR ERV1 0 722 1 5984 220 22 33 chr11 60875175 60875499 -89908054 - MSTB-int LTR MaLR -1348 303 1 1268 211 38 15 chr11 60875501 60875762 -89907791 - MSTB LTR MaLR -2 424 158 1479 153 31 79 chr11 60875800 60876163 -89907390 - MER4A LTR ERV1 0 664 261 589 172 0 10 chr11 60876163 60876262 -89907291 - MER4A LTR ERV1 -566 98 1 8765 118 43 19 chr11 60876268 60878766 -89904787 - MER4A-int LTR ERV1 0 6598 3271 2183 129 0 0 chr11 60878766 60879069 -89904484 + AluSg SINE Alu 1 303 -7 656 167 28 44 chr11 60879292 60879472 -89904081 - MER4-int LTR ERV1 -2586 4012 3836 * 1403 164 34 36 chr11 60879465 60879849 -89903704 - MER4-int LTR ERV1 -2912 3686 3304 21 0 0 0 chr11 60880855 60880876 -89902677 + AT_rich Low_complexity Low_complexity 1 21 0 2198 101 49 13 chr11 60881617 60882081 -89901472 - MER4-int LTR ERV1 -638 4242 1801 708 146 115 8 chr11 60882081 60882211 -89901342 + LTR8 LTR ERV1 1 144 -547 6783 105 44 18 chr11 60882211 60883418 -89900135 - MER4-int LTR ERV1 -3392 1623 504 1677 135 164 75 chr11 60883418 60883789 -89899764 - MER4A LTR ERV1 0 664 261 625 102 10 20 chr11 60883789 60883887 -89899666 - MER4A LTR ERV1 -566 98 2 499 255 0 0 chr11 60883889 60883995 -89899558 - MSTB LTR MaLR -320 106 1 9483 214 33 17 chr11 60883995 60887446 -89896107 + L1PA16 LINE L1 2661 6166 0 1580 190 34 5 chr11 60887451 60887836 -89895717 + L1 LINE L1 4151 4546 -1600 248 198 86 25 chr11 60887822 60887903 -89895650 + L1MA1 LINE L1 5936 6021 -281 * 685 250 102 0 chr11 60887939 60888009 -89895544 + Charlie1 DNA MER1_type 1441 1502 -1259 180 0 0 0 chr11 60888009 60888029 -89895524 + (TA)n Simple_repeat Simple_repeat 2 21 0 685 250 102 0 chr11 60888029 60888202 -89895351 + Charlie1 DNA MER1_type 1502 1709 -1052 2623 202 82 30 chr11 60888204 60888965 -89894588 + Charlie1 DNA MER1_type 1875 2674 -87 896 157 0 20 chr11 60888970 60889123 -89894430 - MLT2B2 LTR ERVL -2 513 364 333 277 46 15 chr11 60890294 60890424 -89893129 - MIR SINE MIR -12 250 117 189 74 0 0 chr11 60891846 60891873 -89891680 + (TG)n Simple_repeat Simple_repeat 1 27 0 357 24 0 0 chr11 60892078 60892120 -89891433 + (CA)n Simple_repeat Simple_repeat 1 42 0 2627 171 30 2 chr11 60892121 60892561 -89890992 - MLT2B1 LTR ERVL -68 452 1 260 290 0 0 chr11 60892859 60892921 -89890632 + L2 LINE L2 3248 3309 -4 280 327 164 0 chr11 60892937 60893102 -89890451 - MIR SINE MIR 0 262 71 2304 165 59 2 chr11 60893303 60893708 -89889845 - MSTA LTR MaLR 0 428 1 22 35 0 0 chr11 60893954 60893983 -89889570 + AT_rich Low_complexity Low_complexity 1 29 0 2680 179 32 35 chr11 60894586 60895184 -89888369 - L1MA7 LINE L1 -68 6223 5628 266 346 12 0 chr11 60895248 60895329 -89888224 + L2 LINE L2 3185 3266 -6 531 140 21 11 chr11 60895421 60895514 -89888039 + MER4A LTR ERV1 5 98 -566 1675 154 195 20 chr11 60895514 60895858 -89887695 + MER4A LTR ERV1 261 664 0 2528 115 40 16 chr11 60895861 60896521 -89887032 + MER4A-int LTR ERV1 1 818 -5780 6991 134 56 5 chr11 60896524 60897823 -89885730 + MER4A-int LTR ERV1 1131 2495 -4103 1264 165 72 4 chr11 60897823 60898060 -89885493 - LTR8 LTR ERV1 -434 257 5 2489 128 82 12 chr11 60898070 60898569 -89884984 + MER4A-int LTR ERV1 2745 3278 -3320 6518 78 9 22 chr11 60898603 60900119 -89883434 - L1PA7 LINE L1 0 6154 4649 2207 115 0 0 chr11 60900119 60900415 -89883138 + AluSg SINE Alu 3 298 -12 6518 78 9 22 chr11 60900415 60900627 -89882926 - L1PA7 LINE L1 -1505 4649 4436 40794 67 7 1 chr11 60900634 60906744 -89876809 + L1PA5 LINE L1 1 6142 -12 189 94 0 0 chr11 60906744 60906776 -89876777 + (TA)n Simple_repeat Simple_repeat 2 33 0 9921 124 26 0 chr11 60906779 60908360 -89875193 - L1PA7 LINE L1 -1694 4452 2831 440 135 75 53 chr11 60908364 60908497 -89875056 + MER4A-int LTR ERV1 3877 4012 -2586 892 116 0 0 chr11 60908542 60908663 -89874890 - AluSq/x SINE Alu -181 132 12 1089 162 0 0 chr11 60908663 60908830 -89874723 + AluSp SINE Alu 128 294 -19 317 121 30 15 chr11 60908839 60908905 -89874648 + L1MB2 LINE L1 6069 6135 -36 21 0 0 0 chr11 60908933 60908954 -89874599 + AT_rich Low_complexity Low_complexity 1 21 0 2675 90 0 3 chr11 60909785 60910151 -89873402 - L1PA8 LINE L1 0 6172 5808 14438 112 61 28 chr11 60910151 60912234 -89871319 + MER4A-int LTR ERV1 3998 6184 -414 2282 82 0 10 chr11 60912234 60912526 -89871027 - AluY SINE Alu -22 289 1 14438 112 61 28 chr11 60912526 60912955 -89870598 + MER4A-int LTR ERV1 6184 6597 -1 520 165 21 10 chr11 60912960 60913057 -89870496 + MER4A LTR ERV1 1 98 -566 1703 126 161 81 chr11 60913057 60913429 -89870124 + MER4A LTR ERV1 261 662 -2 482 282 16 0 chr11 60913640 60913764 -89869789 - MIR SINE MIR -62 146 21 3425 194 21 15 chr11 60914684 60915396 -89868157 + L1MB4 LINE L1 5364 6079 -101 692 163 11 94 chr11 60915470 60915823 -89867730 + MER52A LTR ERV1 163 472 -806 386 204 32 0 chr11 60915834 60915927 -89867626 + L1MB4 LINE L1 6076 6171 -9 405 0 0 0 chr11 60915929 60915974 -89867579 + (TG)n Simple_repeat Simple_repeat 2 46 0 27 29 0 0 chr11 60916111 60916145 -89867408 + AT_rich Low_complexity Low_complexity 1 34 0 454 331 78 16 chr11 60916788 60917030 -89866523 + MIR SINE MIR 5 261 -1 2068 127 0 0 chr11 60917479 60917779 -89865774 - AluSc SINE Alu -9 300 1 1738 241 69 27 chr11 60917992 60918470 -89865083 + MLT1D LTR MaLR 8 505 0 677 230 69 18 chr11 60920819 60921036 -89862517 - L1MC4a LINE L1 -1850 5958 5731 22 0 0 0 chr11 60921327 60921349 -89862204 + AT_rich Low_complexity Low_complexity 1 22 0 213 370 55 78 chr11 60923318 60923769 -89859784 - L2 LINE L2 -5 3267 2827 358 278 33 0 chr11 60924392 60924482 -89859071 - MIR3 SINE MIR -10 198 106 582 317 74 3 chr11 60924860 60925172 -89858381 + L1ME4a LINE L1 5543 5876 -245 1988 123 3 17 chr11 60925213 60925549 -89858004 + AluSg SINE Alu 1 310 0 655 292 19 28 chr11 60925918 60926134 -89857419 + MIR SINE MIR 8 221 -41 198 298 69 30 chr11 60926439 60926570 -89856983 - L2 LINE L2 -1320 1994 1859 3545 175 136 3 chr11 60926965 60927131 -89856422 + MER6 DNA MER2_type 1 144 -721 396 0 0 0 chr11 60927131 60927175 -89856378 + (TG)n Simple_repeat Simple_repeat 1 44 0 3545 175 136 3 chr11 60927175 60927287 -89856266 + MER6 DNA MER2_type 144 240 -625 270 0 0 0 chr11 60927287 60927317 -89856236 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 3545 175 136 3 chr11 60927317 60927796 -89855757 + MER6 DNA MER2_type 240 860 -5 238 376 57 36 chr11 60928114 60928446 -89855107 - L2 LINE L2 -2141 1173 835 399 339 62 23 chr11 60929753 60929930 -89853623 + MER5A DNA MER1_type 1 184 -5 1074 263 27 31 chr11 60929975 60930268 -89853285 + AluJo SINE Alu 3 294 -8 266 311 0 47 chr11 60930338 60930444 -89853109 - MIR SINE MIR -64 144 44 21 36 0 0 chr11 60930881 60930909 -89852644 + AT_rich Low_complexity Low_complexity 1 28 0 15091 187 29 13 chr11 60930912 60933994 -89849559 + L1M1 LINE L1 13 3142 -4423 511 152 0 0 chr11 60933994 60934073 -89849480 - AluJ/FLAM SINE Alu -233 79 1 1493 151 25 119 chr11 60934073 60934321 -89849232 + L1M1 LINE L1 4781 4972 -2593 2042 83 7 0 chr11 60934321 60934597 -89848956 + L1PA7 LINE L1 5874 6151 -3 1493 151 25 119 chr11 60934597 60934785 -89848768 + L1M1 LINE L1 4972 5176 -2389 2000 172 0 21 chr11 60934786 60934977 -89848576 - L1 LINE L1 -2042 4104 3924 7113 88 27 18 chr11 60934977 60935974 -89847579 + LTR13 LTR ERVK 1 1006 -1 2000 172 0 21 chr11 60935974 60936171 -89847382 - L1 LINE L1 -2222 3924 3724 24 32 0 0 chr11 60936197 60936228 -89847325 + AT_rich Low_complexity Low_complexity 1 31 0 291 306 141 29 chr11 60936512 60936682 -89846871 - L2 LINE L2 -702 2612 2424 777 274 15 5 chr11 60937080 60937284 -89846269 - MIR SINE MIR 0 262 57 493 175 103 0 chr11 60937416 60937513 -89846040 - MLT1B LTR MaLR -281 109 3 252 271 144 17 chr11 60937733 60937851 -89845702 + MIR SINE MIR 67 199 -63 22 0 0 0 chr11 60937852 60937874 -89845679 + AT_rich Low_complexity Low_complexity 1 22 0 427 159 0 0 chr11 60937885 60937954 -89845599 + Tigger2 DNA MER2_type 1 69 -2649 955 203 6 6 chr11 60937991 60938168 -89845385 - MER8 DNA MER2_type -62 177 1 4692 161 28 7 chr11 60938345 60938945 -89844608 - L1MA8 LINE L1 -11 6280 5652 13784 153 13 7 chr11 60938945 60940495 -89843058 - Tigger1 DNA MER2_type 0 2418 845 2037 129 3 31 chr11 60940495 60940812 -89842741 + AluSq SINE Alu 1 308 -5 13784 153 13 7 chr11 60940812 60941663 -89841890 - Tigger1 DNA MER2_type -1573 845 1 4692 161 28 7 chr11 60941663 60941989 -89841564 - L1MA8 LINE L1 -639 5652 5334 440 172 0 0 chr11 60942291 60942384 -89841169 - Tigger1 DNA MER2_type -1742 676 584 399 41 0 0 chr11 60942542 60942591 -89840962 + (A)n Simple_repeat Simple_repeat 1 49 0 320 267 35 0 chr11 60943774 60943860 -89839693 + MER5A DNA MER1_type 60 148 -41 183 286 0 48 chr11 60943894 60943957 -89839596 - MIR3 SINE MIR -48 160 101 581 267 121 46 chr11 60943988 60944353 -89839200 - L1MEc LINE L1 -5909 487 86 212 0 36 0 chr11 60944353 60944381 -89839172 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 581 267 121 46 chr11 60944381 60944427 -89839126 - L1MEc LINE L1 -6310 86 45 2439 275 41 22 chr11 60944435 60945336 -89838217 - L1MEc LINE L1 -5456 940 23 528 325 104 12 chr11 60945695 60945935 -89837618 - MIR SINE MIR 0 262 1 1177 185 106 21 chr11 60946067 60946397 -89837156 + L1MA10 LINE L1 5932 6289 -45 639 225 45 35 chr11 60947254 60947454 -89836099 - MER3 DNA MER1_type -6 203 2 2852 226 50 42 chr11 60947699 60948904 -89834649 - L1ME1 LINE L1 -27 6139 4937 381 140 43 0 chr11 60948934 60949027 -89834526 - L1ME1 LINE L1 -1573 4573 4477 229 289 249 17 chr11 60949630 60950035 -89833518 - L2 LINE L2 -6 3307 2809 237 276 41 73 chr11 60950289 60950412 -89833141 + L2 LINE L2 3190 3308 -5 * 620 310 130 22 chr11 60950396 60950757 -89832796 - L2 LINE L2 -2 3311 2912 629 240 53 38 chr11 60951164 60951499 -89832054 - LTR35 LTR ERV1 0 675 350 517 230 209 7 chr11 60952414 60952553 -89831000 + MER5A DNA MER1_type 1 167 -22 285 152 0 76 chr11 60953334 60953400 -89830153 - MIR SINE MIR -144 118 58 1467 194 43 47 chr11 60953579 60954070 -89829483 - MER51A LTR ERV1 0 634 117 862 225 17 48 chr11 60954161 60954450 -89829103 - LTR4 LTR ERV1 0 596 317 2066 207 0 12 chr11 60954871 60955286 -89828267 - HERV3 LTR ERV1 0 8426 8017 * 15208 189 16 9 chr11 60955279 60958124 -89825429 - HERV3 LTR ERV1 -1913 6513 3650 9335 223 21 3 chr11 60958123 60960009 -89823544 - HERV3 LTR ERV1 -5838 2588 669 * 1271 140 10 31 chr11 60960243 60960546 -89823007 - MER51A LTR ERV1 -179 455 1 354 238 8 16 chr11 60960720 60960842 -89822711 - L1M4 LINE L1 -1904 4242 4122 2886 189 23 7 chr11 60960876 60961443 -89822110 - LTR22 LTR ERVK -4 576 1 4128 175 23 27 chr11 60961444 60962408 -89821145 - HERVK22 LTR ERVK -2 6835 2623 5582 128 42 2 chr11 60962477 60963517 -89820036 - HERVK22 LTR ERVK -2013 4824 2027 494 105 13 0 chr11 60963516 60963592 -89819961 - HERVK22 LTR ERVK -3287 3550 3474 * 727 209 38 6 chr11 60964008 60964166 -89819387 - HERVK22 LTR ERVK -4348 2489 2327 3205 176 9 52 chr11 60964575 60965262 -89818291 - HERVK22 LTR ERVK -6149 688 32 3058 174 18 3 chr11 60965446 60966011 -89817542 - LTR22 LTR ERVK -7 573 1 841 259 29 25 chr11 60966012 60966328 -89817225 - L1M4 LINE L1 -2019 4127 3811 1581 265 87 7 chr11 60966407 60966962 -89816591 - L1MEc LINE L1 -5760 636 38 312 345 66 60 chr11 60967127 60967629 -89815924 + L1M4 LINE L1 4014 4518 -1628 523 173 18 9 chr11 60967755 60967865 -89815688 + MLT1A1 LTR MaLR 1 111 -254 1315 206 2 92 chr11 60967917 60968319 -89815234 - MLT1B LTR MaLR -24 366 1 263 303 42 12 chr11 60968348 60968513 -89815040 + L1M4 LINE L1 4881 5050 -1096 1807 139 4 7 chr11 60968740 60969014 -89814539 + AluSg SINE Alu 33 305 -5 26 74 0 0 chr11 60969190 60969244 -89814309 + AT_rich Low_complexity Low_complexity 1 54 0 24 85 0 0 chr11 60969749 60969808 -89813745 + AT_rich Low_complexity Low_complexity 1 59 0 504 291 184 9 chr11 60969906 60970129 -89813424 + MIR SINE MIR 1 262 0 180 0 0 0 chr11 60970271 60970291 -89813262 + (C)n Simple_repeat Simple_repeat 1 20 0 213 39 0 0 chr11 60970315 60970341 -89813212 + (A)n Simple_repeat Simple_repeat 1 26 0 771 162 16 49 chr11 60970409 60970594 -89812959 - LTR9 LTR ERV1 -433 179 1 239 287 40 0 chr11 60970839 60970940 -89812613 - L1M4 LINE L1 -3584 2562 2458 1055 229 71 34 chr11 60971110 60971464 -89812089 + MLT1A2 LTR MaLR 4 370 -4 29 0 0 0 chr11 60972336 60972365 -89811188 + AT_rich Low_complexity Low_complexity 1 29 0 252 323 105 16 chr11 60973185 60973309 -89810244 + L2 LINE L2 3138 3272 0 514 209 172 31 chr11 60974313 60974476 -89809077 - MER5A DNA MER1_type -1 188 3 289 253 30 30 chr11 60974817 60974916 -89808637 + LTR34 LTR ERV1 268 366 -333 471 276 36 105 chr11 60975767 60976216 -89807337 + L1MC/D LINE L1 3071 3488 -2658 1732 157 0 3 chr11 60976249 60976554 -89806999 - L1PA16 LINE L1 -299 5867 5564 1508 171 20 10 chr11 60976554 60976851 -89806702 + L1PA16 LINE L1 5863 6163 -3 838 306 104 56 chr11 60976950 60978450 -89805103 + L1MC/D LINE L1 3652 5244 -902 941 312 66 20 chr11 60978455 60978997 -89804556 + L1MC/D LINE L1 5255 5821 -1987 1583 76 41 79 chr11 60979093 60979383 -89804170 - AluYa5 SINE Alu -6 305 27 204 40 0 0 chr11 60979440 60979465 -89804088 + (GGGGA)n Simple_repeat Simple_repeat 3 27 0 535 209 121 68 chr11 60980341 60980547 -89803006 - MIR SINE MIR 0 262 46 323 260 87 24 chr11 60980586 60980713 -89802840 + MIR SINE MIR 102 236 -26 1748 171 0 7 chr11 60980776 60981057 -89802496 - AluJb SINE Alu -33 279 1 604 341 11 30 chr11 60981766 60982030 -89801523 - MIR SINE MIR -2 260 2 395 296 63 28 chr11 60982455 60982597 -89800956 - MIR SINE MIR -96 166 20 288 319 82 58 chr11 60983023 60983230 -89800323 + MIR SINE MIR 48 259 -3 1093 185 59 143 chr11 60984167 60984593 -89798960 - L1MB3 LINE L1 -7 6176 5787 1211 155 5 24 chr11 60984983 60985189 -89798364 - MER57B-int LTR ERV1 -5457 489 288 * 3708 155 44 34 chr11 60985173 60985445 -89798108 - MER57B-int LTR ERV1 -6852 685 417 186 43 0 0 chr11 60985445 60985468 -89798085 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 3708 155 44 34 chr11 60985468 60985873 -89797680 - MER57B-int LTR ERV1 -7120 417 1 2786 162 7 2 chr11 60985873 60986305 -89797248 - MER57B LTR ERV1 0 434 1 1769 289 166 11 chr11 60986306 60986964 -89796589 + L2 LINE L2 1764 2523 -791 2099 247 59 10 chr11 60986965 60987459 -89796094 + LTR40a LTR ERVL 2 519 0 402 318 56 46 chr11 60987480 60987836 -89795717 + L2 LINE L2 2660 3073 -240 4510 36 4 17 chr11 60987842 60988375 -89795178 + L1PA3 LINE L1 5630 6155 0 1014 193 26 48 chr11 60988439 60988667 -89794886 - AluJb SINE Alu -19 293 71 5342 123 64 26 chr11 60988674 60989594 -89793959 - LOR1b-int LTR ERV1 -6963 1157 203 1911 169 62 11 chr11 60989598 60989954 -89793599 - LOR1b-int LTR ERV1 -7744 376 3 2137 213 43 0 chr11 60989956 60990398 -89793155 - LOR1b LTR ERV1 0 461 1 668 204 0 32 chr11 60993460 60993617 -89789936 - L1MA10 LINE L1 0 6334 6183 9899 240 3 6 chr11 60993789 60995908 -89787645 + L1M3e LINE L1 1 2113 -4917 407 363 72 10 chr11 60996096 60996388 -89787165 + L2 LINE L2 2178 2487 -827 281 322 0 0 chr11 60996848 60996935 -89786618 - L1MB3 LINE L1 -459 5711 5625 546 297 11 51 chr11 60997021 60997315 -89786238 - L1MB3 LINE L1 -526 5596 5296 1919 95 13 44 chr11 60997505 60997821 -89785732 - AluSg1 SINE Alu -3 306 1 881 257 77 31 chr11 60997852 60998175 -89785378 + LTR9 LTR ERV1 255 592 -20 226 113 0 113 chr11 60998380 60998442 -89785111 + (TTTTTG)n Simple_repeat Simple_repeat 1 55 0 237 33 0 0 chr11 60999206 60999236 -89784317 + (CA)n Simple_repeat Simple_repeat 2 31 0 210 287 17 96 chr11 61000349 61000464 -89783089 - MIR3 SINE MIR -36 172 67 195 290 80 10 chr11 61000900 61001000 -89782553 - L2 LINE L2 -257 3056 2950 418 236 32 24 chr11 61001000 61001123 -89782430 + Charlie7 DNA MER1_type 26 149 -2463 216 330 106 11 chr11 61001223 61001317 -89782236 + L2 LINE L2 3159 3261 -11 190 274 14 68 chr11 61002534 61002607 -89780946 + MER5A DNA MER1_type 61 129 -60 274 236 118 45 chr11 61002611 61002721 -89780832 + MER5A DNA MER1_type 70 187 -2 188 278 28 42 chr11 61002733 61002805 -89780748 - MIR SINE MIR -60 148 78 210 358 0 0 chr11 61002898 61002965 -89780588 + MIR SINE MIR 126 192 -70 3544 117 10 19 chr11 61004503 61005017 -89778536 + MER9 LTR ERVK 3 511 0 2188 127 0 0 chr11 61005025 61005325 -89778228 + AluSx SINE Alu 1 300 -12 1232 284 45 55 chr11 61005394 61005563 -89777990 + L2 LINE L2 2201 2370 -944 222 37 0 0 chr11 61005563 61005590 -89777963 + (CA)n Simple_repeat Simple_repeat 2 28 0 1232 284 45 55 chr11 61005590 61006037 -89777516 + L2 LINE L2 2370 2811 -503 489 280 16 48 chr11 61007145 61007331 -89776222 - L2 LINE L2 -474 2840 2661 2184 237 59 10 chr11 61007353 61007847 -89775706 - LTR40a LTR ERVL 0 519 2 1916 278 113 12 chr11 61007848 61008539 -89775014 - L2 LINE L2 -791 2523 1763 2853 155 5 2 chr11 61008539 61008972 -89774581 + MER57B LTR ERV1 1 434 0 3760 169 43 5 chr11 61008972 61009377 -89774176 + MER57B-int LTR ERV1 1 442 -7095 270 0 0 0 chr11 61009377 61009407 -89774146 + (TG)n Simple_repeat Simple_repeat 1 30 0 3760 169 43 5 chr11 61009407 61009651 -89773902 + MER57B-int LTR ERV1 442 675 -6862 1316 145 0 24 chr11 61009645 61009852 -89773701 + MER41-int LTR ERV1 288 489 -5457 * 1583 201 25 53 chr11 61010241 61010635 -89772918 + L1MB4 LINE L1 5786 6168 -12 16154 102 11 5 chr11 61010707 61012967 -89770586 + L1PA5 LINE L1 2 2276 -3870 14662 55 0 0 chr11 61012967 61015491 -89768062 + L1PA5 LINE L1 3627 6150 -4 16154 102 11 5 chr11 61015491 61015510 -89768043 + L1PA5 LINE L1 2276 2293 -3853 374 305 102 23 chr11 61017003 61017180 -89766373 + MIR SINE MIR 20 210 -52 485 298 6 44 chr11 61017379 61017560 -89765993 + MIR SINE MIR 87 260 -2 1530 193 0 61 chr11 61018261 61018588 -89764965 + AluJb SINE Alu 1 307 -5 241 288 96 16 chr11 61018629 61018754 -89764799 - MIR SINE MIR -26 236 102 312 257 106 9 chr11 61018834 61018947 -89764606 + MIR SINE MIR 108 231 -31 198 0 0 0 chr11 61019955 61019977 -89763576 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2680 54 3 0 chr11 61019977 61020291 -89763262 - L1PA4 LINE L1 -16 6139 5825 804 52 0 0 chr11 61020291 61020387 -89763166 + L1P1 LINE L1 5556 5651 -504 825 306 77 33 chr11 61020456 61020999 -89762554 - L1MC/D LINE L1 -1987 5821 5255 898 308 105 62 chr11 61021014 61022316 -89761237 - L1MC/D LINE L1 -914 5232 3875 34785 114 15 11 chr11 61022397 61028517 -89755036 - L1PA6 LINE L1 -4 6150 11 1398 169 34 14 chr11 61028740 61029035 -89754518 - L1PA16 LINE L1 -3 6163 5863 1600 181 0 3 chr11 61029035 61029345 -89754208 + L1PA16 LINE L1 5565 5873 -293 555 294 37 76 chr11 61029371 61029807 -89753746 - L1MC/D LINE L1 -2657 3489 3071 442 245 176 31 chr11 61031069 61031228 -89752325 + MER5A DNA MER1_type 7 188 -1 313 363 108 15 chr11 61032232 61032436 -89751117 - L2 LINE L2 -1 3271 3049 190 351 0 0 chr11 61032911 61032988 -89750565 - L2 LINE L2 -227 3045 2969 1539 124 0 27 chr11 61033162 61033387 -89750166 + AluSg/x SINE Alu 91 309 -1 782 281 36 0 chr11 61033490 61033714 -89749839 + MLT1D LTR MaLR 274 505 0 509 242 76 54 chr11 61035928 61036151 -89747402 - L1MC4a LINE L1 -161 5960 5731 790 204 16 11 chr11 61038421 61038607 -89744946 + HERVK LTR ERVK 526 712 -6531 13531 202 16 14 chr11 61038715 61043171 -89740382 + HERVK LTR ERVK 2905 7241 -2 3975 197 22 51 chr11 61043173 61044156 -89739397 + LTR5 LTR ERVK 1 955 -14 656 240 34 39 chr11 61044199 61044378 -89739175 + MIR SINE MIR 8 185 -77 238 371 48 8 chr11 61044698 61044822 -89738731 + L2 LINE L2 3143 3271 -1 22 56 0 0 chr11 61045229 61045265 -89738288 + AT_rich Low_complexity Low_complexity 1 36 0 214 343 111 25 chr11 61045315 61045674 -89737879 - L2 LINE L2 -1211 2103 1714 4141 188 20 35 chr11 61045986 61046864 -89736689 + MER6 DNA MER2_type 1 865 0 406 343 64 23 chr11 61048806 61048978 -89734575 + MER5A DNA MER1_type 6 184 -5 1135 253 30 27 chr11 61049021 61049317 -89734236 + AluJo SINE Alu 3 299 -3 223 289 11 67 chr11 61049388 61049478 -89734075 - MIR SINE MIR -64 144 60 22 35 0 0 chr11 61049927 61049956 -89733597 + AT_rich Low_complexity Low_complexity 1 29 0 17588 180 29 15 chr11 61049959 61053675 -89729878 + L1M1 LINE L1 13 3779 -3786 41579 45 2 1 chr11 61053687 61059824 -89723729 + L1PA3 LINE L1 9 6153 -2 5085 198 13 62 chr11 61059843 61060302 -89723251 + L1M1 LINE L1 3786 4266 -3299 1860 148 6 25 chr11 61060302 61060620 -89722933 + AluSx SINE Alu 1 312 0 5085 198 13 62 chr11 61060620 61061180 -89722373 + L1M1 LINE L1 4266 4852 -2713 1724 169 3 36 chr11 61061180 61061482 -89722071 - AluSx SINE Alu -20 292 1 5085 198 13 62 chr11 61061482 61061731 -89721822 + L1M1 LINE L1 4852 4976 -2589 1933 98 15 0 chr11 61061731 61062005 -89721548 + L1PA7 LINE L1 5874 6151 -3 5085 198 13 62 chr11 61062005 61062197 -89721356 + L1M1 LINE L1 4976 5176 -2389 1976 197 0 0 chr11 61062198 61062584 -89720969 - L1 LINE L1 -2042 4104 3719 251 348 127 6 chr11 61062929 61063087 -89720466 - L2 LINE L2 -711 2603 2427 626 303 24 9 chr11 61063492 61063703 -89719850 - MIR SINE MIR 0 262 49 375 229 110 18 chr11 61063816 61063925 -89719628 - MLT1B LTR MaLR -269 121 3 259 293 116 12 chr11 61064151 61064288 -89719265 + MIR SINE MIR 57 203 -5 447 141 0 0 chr11 61064314 61064385 -89719168 + Tigger2 DNA MER2_type 1 71 -2647 809 250 6 0 chr11 61064420 61064596 -89718957 - MER8 DNA MER2_type -62 177 1 4112 187 31 15 chr11 61064773 61065372 -89718181 - L1MA8 LINE L1 -12 7239 6618 13813 156 11 8 chr11 61065372 61066924 -89716629 - Tigger1 DNA MER2_type 0 2418 849 1803 148 7 27 chr11 61066924 61067290 -89716263 + AluSq SINE Alu 1 360 0 13813 156 11 8 chr11 61067290 61068143 -89715410 - Tigger1 DNA MER2_type -1569 849 1 4112 187 31 15 chr11 61068143 61068474 -89715079 - L1MA8 LINE L1 -633 6618 6294 364 179 21 0 chr11 61068777 61068872 -89714681 - Tigger1 DNA MER2_type -1742 676 580 233 217 0 0 chr11 61069027 61069087 -89714466 + A-rich Low_complexity Low_complexity 1 60 0 9319 211 51 6 chr11 61070580 61073095 -89710458 - L1MA8 LINE L1 -796 6310 3681 2793 246 18 4 chr11 61073097 61074422 -89709131 - L1MA8 LINE L1 -4253 2854 1518 1857 219 43 2 chr11 61075626 61076069 -89707484 + LOR1b LTR ERV1 1 461 0 1802 177 50 8 chr11 61076069 61076430 -89707123 + LOR1b-int LTR ERV1 1 376 -7744 4861 130 79 8 chr11 61076434 61077332 -89706221 + LOR1-int LTR ERV1 203 1164 -6956 910 189 48 66 chr11 61077332 61077560 -89705993 + AluJb SINE Alu 71 294 -18 455 338 29 40 chr11 61077609 61077988 -89705565 - L2 LINE L2 -225 3088 2661 402 326 56 0 chr11 61078047 61078225 -89705328 - LTR40a LTR ERVL -61 458 271 * 795 172 38 0 chr11 61078223 61078380 -89705173 - LTR40a LTR ERVL -355 164 2 1947 298 100 10 chr11 61078381 61079079 -89704474 - L2 LINE L2 -791 2523 1763 2508 172 24 2 chr11 61079079 61079504 -89704049 + MER57B LTR ERV1 1 434 0 3906 167 21 25 chr11 61079504 61080182 -89703371 + MER57B-int LTR ERV1 1 675 -6862 459 171 0 0 chr11 61080176 61080246 -89703307 + MER41-int LTR ERV1 288 357 -5589 * 2955 6 0 0 chr11 61080272 61080587 -89702966 + AluYb8 SINE Alu 1 315 -3 351 260 65 39 chr11 61080694 61080848 -89702705 - LTR1B LTR ERV1 -668 158 1 2080 223 3 10 chr11 61080848 61081234 -89702319 + MER41-int LTR ERV1 1661 2043 -2148 912 288 100 15 chr11 61081271 61081725 -89701828 + MER101B LTR ERV1 24 442 -32 225 0 0 0 chr11 61081829 61081854 -89701699 + (C)n Simple_repeat Simple_repeat 1 25 0 258 32 0 0 chr11 61081885 61081916 -89701637 + (A)n Simple_repeat Simple_repeat 1 31 0 306 285 126 26 chr11 61082261 61082412 -89701141 + MIR SINE MIR 45 210 -52 473 333 14 40 chr11 61082805 61083027 -89700526 + MIR SINE MIR 8 223 -39 1635 189 0 10 chr11 61083764 61084061 -89699492 + AluJo SINE Alu 1 294 -18 279 244 102 39 chr11 61084095 61084222 -89699331 - MIR SINE MIR -26 236 102 474 234 129 35 chr11 61084263 61084434 -89699119 + MIR SINE MIR 48 234 -28 1053 295 73 17 chr11 61085372 61085908 -89697645 - L1MC/D LINE L1 -1988 5820 5255 526 315 120 50 chr11 61085913 61086614 -89696939 - L1MC/D LINE L1 -902 5244 4495 335 271 136 36 chr11 61086671 61087229 -89696324 - L1MC/D LINE L1 -1887 4259 3652 1737 149 28 3 chr11 61087336 61087618 -89695935 - L1PA16 LINE L1 -9 6157 5869 1870 153 0 10 chr11 61087623 61087936 -89695617 + L1PA16 LINE L1 5564 5873 -293 369 277 153 55 chr11 61087960 61088400 -89695153 - L1MC/D LINE L1 -2658 3488 3009 302 273 30 30 chr11 61089201 61089300 -89694253 - LTR34 LTR ERV1 -333 366 268 514 258 147 6 chr11 61089641 61089804 -89693749 + MER5A DNA MER1_type 3 188 -1 239 356 69 29 chr11 61090809 61090983 -89692570 - L2 LINE L2 -1 3271 3091 688 187 77 39 chr11 61092657 61092839 -89690714 - MLT1A2 LTR MaLR -166 208 20 1773 228 54 85 chr11 61093381 61093629 -89689924 + LTR9 LTR ERV1 1 255 -357 1760 149 0 47 chr11 61093629 61093951 -89689602 - AluSg1 SINE Alu -2 307 1 1773 228 54 85 chr11 61093951 61094334 -89689219 + LTR9 LTR ERV1 255 612 0 228 67 0 0 chr11 61095362 61095392 -89688161 + (CA)n Simple_repeat Simple_repeat 2 31 0 275 270 15 90 chr11 61096509 61096642 -89686911 - MIR SINE MIR -36 172 43 351 262 74 8 chr11 61097136 61097258 -89686295 + Charlie7 DNA MER1_type 15 144 -2468 247 364 100 0 chr11 61097347 61097457 -89686096 + L2 LINE L2 3141 3261 -11 268 320 16 39 chr11 61098608 61098736 -89684817 + MER5A DNA MER1_type 54 178 -11 291 272 48 29 chr11 61098767 61098870 -89684683 + MER5A DNA MER1_type 51 155 -34 209 182 45 121 chr11 61098900 61098966 -89684587 - MIR SINE MIR -60 148 88 229 303 182 0 chr11 61099037 61099136 -89684417 + MIR SINE MIR 76 192 -70 1243 229 10 26 chr11 61100737 61101042 -89682511 + AluSx SINE Alu 1 300 -2 912 311 39 31 chr11 61101288 61101677 -89681876 + L2 LINE L2 2420 2811 -503 222 231 77 58 chr11 61104097 61104201 -89679352 - MER5A DNA MER1_type -37 152 47 976 261 86 24 chr11 61104324 61104741 -89678812 - L1MEc LINE L1 -5909 487 45 2586 279 41 24 chr11 61104749 61105626 -89677927 - L1MEc LINE L1 -5456 940 49 489 292 112 30 chr11 61106013 61106246 -89677307 - MIR SINE MIR 0 262 11 1115 205 120 18 chr11 61106364 61106711 -89676842 + L1MA10 LINE L1 5911 6289 -45 598 204 36 122 chr11 61107571 61107601 -89675952 - MER3 DNA MER1_type -6 203 172 2326 84 0 3 chr11 61107601 61107900 -89675653 - AluY SINE Alu -13 298 1 598 204 36 122 chr11 61107900 61108090 -89675463 - MER3 DNA MER1_type -37 172 2 3149 227 52 38 chr11 61108327 61109551 -89674002 - L1ME1 LINE L1 0 6166 4937 407 171 12 0 chr11 61109595 61109677 -89673876 - L1ME1 LINE L1 -1587 4559 4477 3523 180 0 7 chr11 61110232 61110803 -89672750 - HERV3 LTR ERV1 -2675 5751 5185 10684 207 55 6 chr11 61112113 61114622 -89668931 - L1 LINE L1 -796 6310 3681 10131 251 12 6 chr11 61114624 61117467 -89666086 - L1 LINE L1 -4253 2854 1 736 209 4 96 chr11 61117558 61117788 -89665765 + L1MA10 LINE L1 6126 6334 0 216 297 63 54 chr11 61118168 61118279 -89665274 + MIR SINE MIR 19 130 -78 1945 208 41 41 chr11 61120838 61121299 -89662254 + LOR1b LTR ERV1 1 461 0 1869 183 50 8 chr11 61121299 61121660 -89661893 + LOR1b-int LTR ERV1 1 376 -7744 4967 138 90 8 chr11 61121664 61122553 -89661000 + LOR1-int LTR ERV1 203 1164 -6956 960 178 35 57 chr11 61122553 61122783 -89660770 + AluJo SINE Alu 71 295 -17 457 359 32 21 chr11 61122832 61123211 -89660342 - L2 LINE L2 -225 3088 2661 496 284 163 5 chr11 61123233 61123448 -89660105 - LTR40a LTR ERVL 0 519 271 * 888 160 45 0 chr11 61123446 61123602 -89659951 - LTR40a LTR ERVL -355 164 2 1916 302 100 11 chr11 61123603 61124302 -89659251 - L2 LINE L2 -791 2523 1763 2712 161 14 2 chr11 61124302 61124731 -89658822 + MER57B LTR ERV1 1 434 0 3926 164 21 25 chr11 61124731 61125409 -89658144 + MER57B-int LTR ERV1 1 675 -6862 435 174 0 0 chr11 61125403 61125472 -89658081 + MER41-int LTR ERV1 288 356 -5590 * 302 291 126 26 chr11 61125832 61125983 -89657570 + MIR SINE MIR 45 210 -52 543 313 13 44 chr11 61126377 61126604 -89656949 + MIR SINE MIR 8 227 -35 1640 188 0 10 chr11 61127331 61127629 -89655924 + AluJo SINE Alu 1 295 -17 251 283 100 17 chr11 61127663 61127783 -89655770 - MIR SINE MIR -26 236 107 520 222 129 35 chr11 61127831 61128002 -89655551 + MIR SINE MIR 48 234 -28 1040 311 87 48 chr11 61128960 61130650 -89652903 - L1MC/D LINE L1 -865 5281 4056 342 162 180 36 chr11 61130896 61131007 -89652546 - L1P LINE L1 -2368 3778 3652 1694 160 28 3 chr11 61131114 61131396 -89652157 - L1PA16 LINE L1 -9 6157 5869 1914 148 3 3 chr11 61131401 61131711 -89651842 + L1PA16 LINE L1 5564 5873 -293 452 302 47 64 chr11 61131739 61132163 -89651390 - L1MC/D LINE L1 -2659 3487 3071 322 230 76 48 chr11 61132951 61133114 -89650439 - LTR34 LTR ERV1 -240 366 238 527 209 172 31 chr11 61133455 61133618 -89649935 + MER5A DNA MER1_type 3 188 -1 243 351 69 29 chr11 61134623 61134797 -89648756 - L2 LINE L2 -1 3271 3091 189 381 68 8 chr11 61135295 61135413 -89648140 - L2 LINE L2 -210 3062 2938 669 191 93 36 chr11 61136474 61136668 -89646885 - MLT1A2 LTR MaLR -166 208 4 1657 221 67 85 chr11 61137204 61137442 -89646111 + LTR9 LTR ERV1 1 242 -370 1378 138 0 88 chr11 61137442 61137760 -89645793 - AluSg1 SINE Alu -19 290 1 1657 221 67 85 chr11 61137760 61138144 -89645409 + LTR9 LTR ERV1 242 612 0 327 25 0 0 chr11 61139174 61139214 -89644339 + (CA)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chr11 61139742 61139770 -89643783 + AT_rich Low_complexity Low_complexity 1 28 0 201 222 0 32 chr11 61140654 61140717 -89642836 - L2 LINE L2 -94 3219 3159 292 259 0 12 chr11 61140971 61141056 -89642497 + Charlie7 DNA MER1_type 35 118 -2494 259 355 100 0 chr11 61141163 61141273 -89642280 + L2 LINE L2 3141 3261 -11 271 333 8 39 chr11 61142424 61142553 -89641000 + MER5A DNA MER1_type 54 178 -11 254 265 51 31 chr11 61142590 61142688 -89640865 + MER5A DNA MER1_type 56 155 -34 182 191 44 147 chr11 61142718 61142786 -89640767 - MIR SINE MIR -60 148 88 228 293 182 0 chr11 61142857 61142956 -89640597 + MIR SINE MIR 76 192 -70 2045 142 0 0 chr11 61144535 61144831 -89638722 + AluSx SINE Alu 1 296 -16 958 303 77 28 chr11 61144899 61144978 -89638575 + L2 LINE L2 2279 2353 -961 198 0 0 0 chr11 61144978 61145000 -89638553 + (CA)n Simple_repeat Simple_repeat 2 23 0 958 303 77 28 chr11 61145000 61145428 -89638125 + L2 LINE L2 2353 2811 -503 305 258 126 106 chr11 61146275 61146577 -89636976 + L1M2 LINE L1 463 770 -6079 217 224 82 61 chr11 61147850 61147948 -89635605 - MER5A DNA MER1_type -37 152 53 885 249 171 23 chr11 61148077 61148416 -89635137 - L1MEc LINE L1 -5909 487 83 204 97 0 0 chr11 61148416 61148447 -89635106 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 885 249 171 23 chr11 61148447 61148493 -89635060 - L1MEc LINE L1 -6313 83 45 2791 267 45 26 chr11 61148501 61149388 -89634165 - L1MEc LINE L1 -5456 940 37 560 275 102 34 chr11 61149757 61149993 -89633560 - MIR SINE MIR 0 262 11 1253 206 104 6 chr11 61150133 61150459 -89633094 + L1MA10 LINE L1 5932 6289 -45 732 183 58 91 chr11 61151319 61151527 -89632026 - MER3 DNA MER1_type -7 202 2 3236 219 58 44 chr11 61151764 61152988 -89630565 - L1ME1 LINE L1 0 6166 4937 464 144 22 0 chr11 61153019 61153109 -89630444 - L1ME1 LINE L1 -1578 4568 4477 212 302 234 29 chr11 61153702 61154086 -89629467 - L2 LINE L2 -42 3271 2809 208 265 59 108 chr11 61154365 61154467 -89629086 + L2 LINE L2 3212 3308 -5 * 674 309 108 24 chr11 61154451 61154820 -89628733 - L2 LINE L2 -2 3311 2912 739 227 55 40 chr11 61155229 61155564 -89627989 - LTR35 LTR ERV1 0 675 350 296 317 92 7 chr11 61155634 61155776 -89627777 - LTR35 LTR ERV1 -464 154 1 503 201 201 0 chr11 61156470 61156609 -89626944 + MER5A DNA MER1_type 1 167 -22 258 143 0 79 chr11 61157339 61157402 -89626151 - MIR SINE MIR -147 115 58 1772 176 45 49 chr11 61157581 61158081 -89625472 - MER51A LTR ERV1 0 634 1 1356 249 37 21 chr11 61158253 61158683 -89624870 - L1M4 LINE L1 -1902 4244 3808 314 113 132 0 chr11 61158694 61158747 -89624806 - L1M4 LINE L1 -2413 3733 3674 2024 234 88 13 chr11 61158760 61159316 -89624237 - L1MEc LINE L1 -5761 635 38 662 320 65 53 chr11 61159444 61160029 -89623524 + L1ME LINE L1 3979 4570 -1576 636 136 18 9 chr11 61160119 61160229 -89623324 + MLT1A1 LTR MaLR 1 111 -254 1542 190 19 92 chr11 61160267 61160682 -89622871 - MLT1B LTR MaLR -5 385 1 848 292 113 7 chr11 61160690 61161357 -89622196 + L1ME LINE L1 4860 5607 -557 337 289 21 70 chr11 61161439 61161581 -89621972 + L1ME LINE L1 5625 5759 -411 2460 91 0 0 chr11 61161660 61161969 -89621584 + AluSg1 SINE Alu 1 309 0 440 364 72 10 chr11 61162318 61162609 -89620944 - L2 LINE L2 -828 2486 2178 21 0 0 0 chr11 61162886 61162907 -89620646 + AT_rich Low_complexity Low_complexity 1 21 0 589 283 97 53 chr11 61163015 61163478 -89620075 + L1ME4a LINE L1 5369 5833 -288 607 232 92 0 chr11 61163590 61163732 -89619821 - L1M4 LINE L1 -1139 5007 4853 25 0 0 0 chr11 61163778 61163803 -89619750 + AT_rich Low_complexity Low_complexity 1 25 0 6482 99 21 2 chr11 61166141 61167195 -89616358 + L1PA15 LINE L1 5080 6157 -8 794 266 158 23 chr11 61168329 61168727 -89614826 - MLT1J LTR MaLR -35 476 25 304 293 35 0 chr11 61169255 61169371 -89614182 - L1ME1 LINE L1 -4 6162 6043 * 860 230 109 34 chr11 61169353 61169766 -89613787 - L1MC5 LINE L1 -246 7715 7272 22 0 0 0 chr11 61169833 61169855 -89613698 + AT_rich Low_complexity Low_complexity 1 22 0 2248 125 8 28 chr11 61170030 61170300 -89613253 - THE1C-int LTR MaLR -923 657 383 2631 126 8 8 chr11 61170300 61170664 -89612889 + THE1B LTR MaLR 1 364 0 11118 104 12 47 chr11 61170664 61172301 -89611252 + THE1B-int LTR MaLR 1 1580 0 2742 111 3 3 chr11 61172303 61172663 -89610890 + THE1B LTR MaLR 3 362 -2 2248 125 8 28 chr11 61172663 61172995 -89610558 - THE1C-int LTR MaLR -1197 383 3 2349 139 35 11 chr11 61172997 61173363 -89610190 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr11 61174672 61174693 -89608860 + AT_rich Low_complexity Low_complexity 1 21 0 194 379 58 11 chr11 61174699 61174786 -89608767 + L2 LINE L2 3142 3232 -40 23 68 0 0 chr11 61175456 61175500 -89608053 + AT_rich Low_complexity Low_complexity 1 44 0 3628 195 35 53 chr11 61176088 61177061 -89606492 + LTR5 LTR ERVK 1 955 -14 307 308 94 34 chr11 61178064 61178181 -89605372 + L2 LINE L2 3148 3271 -1 300 214 0 56 chr11 61178485 61178574 -89604979 + MIR SINE MIR 132 215 -47 249 83 0 0 chr11 61178919 61178955 -89604598 + (TA)n Simple_repeat Simple_repeat 1 36 0 202 222 0 0 chr11 61179585 61179630 -89603923 + A-rich Low_complexity Low_complexity 4 48 0 1059 145 0 2 chr11 61179733 61179996 -89603557 + AluSx SINE Alu 2 312 0 4261 110 25 3 chr11 61180760 61181388 -89602165 - L1PA13 LINE L1 -5 6158 5517 247 260 0 0 chr11 61181494 61181544 -89602009 + polypurine Low_complexity Low_complexity 4 53 0 824 112 28 17 chr11 61181547 61181725 -89601828 + GA-rich Low_complexity Low_complexity 1 180 0 224 71 0 0 chr11 61181725 61181753 -89601800 + (GA)n Simple_repeat Simple_repeat 1 28 0 1732 208 51 18 chr11 61183508 61183961 -89599592 + MER110A LTR ERV1 1 468 0 22 56 0 0 chr11 61184724 61184760 -89598793 + GC_rich Low_complexity Low_complexity 1 36 0 315 284 0 0 chr11 61184997 61185124 -89598429 + GA-rich Low_complexity Low_complexity 2 128 0 278 176 33 11 chr11 61185769 61185860 -89597693 + (TA)n Simple_repeat Simple_repeat 1 93 0 1890 136 3 25 chr11 61185893 61186179 -89597374 - AluSx SINE Alu -30 282 3 427 231 29 0 chr11 61186215 61186319 -89597234 - MIR SINE MIR -115 147 41 221 295 48 48 chr11 61186361 61186466 -89597087 - MIR3 SINE MIR -46 162 58 315 257 209 14 chr11 61186502 61186712 -89596841 + L1MC5 LINE L1 7327 7577 -384 861 252 31 13 chr11 61186886 61187112 -89596441 - MER87 LTR ERV1 -52 489 260 288 200 90 10 chr11 61187493 61187593 -89595960 + L1MC5 LINE L1 7818 7925 -36 467 265 48 14 chr11 61187614 61187761 -89595792 + MIR SINE MIR 79 230 -32 241 312 54 0 chr11 61188240 61188333 -89595220 + MIR SINE MIR 45 142 -120 1894 179 9 6 chr11 61188781 61189111 -89594442 + MER2 DNA MER2_type 2 332 -13 21 36 0 0 chr11 61189480 61189508 -89594045 + AT_rich Low_complexity Low_complexity 1 28 0 188 268 14 42 chr11 61190152 61190223 -89593330 - MIR SINE MIR -27 235 167 2257 112 0 0 chr11 61190954 61191248 -89592305 - AluSq SINE Alu -19 294 1 247 176 220 0 chr11 61193398 61193489 -89590064 - MIR SINE MIR 0 262 152 2183 107 0 42 chr11 61193501 61193810 -89589743 - AluSg SINE Alu -14 296 1 1051 166 51 95 chr11 61194255 61194508 -89589045 + MER4B-int LTR ERV1 5840 6081 -677 925 90 0 62 chr11 61194787 61194932 -89588621 + LTR47A LTR ERVL 317 452 0 2569 185 200 53 chr11 61194932 61195671 -89587882 - L1MC3 LINE L1 -1025 6760 5913 1803 220 16 31 chr11 61195679 61196102 -89587451 - MER82 DNA MER2_type -236 417 1 1601 216 38 45 chr11 61196623 61197071 -89586482 + MLT1C LTR MaLR 1 445 -22 332 168 44 106 chr11 61197071 61197184 -89586369 - MLT1C LTR MaLR -39 428 323 1422 236 99 21 chr11 61197351 61197783 -89585770 + MERVL LTR ERVL 924 1389 -4141 613 244 87 73 chr11 61198479 61198754 -89584799 + MERVL LTR ERVL 2693 2971 -2559 1677 325 60 27 chr11 61199120 61200301 -89583252 + MERVL LTR ERVL 2295 3517 -1968 1455 241 39 18 chr11 61200318 61200708 -89582845 + MLT1D LTR MaLR 22 419 -86 23 0 0 0 chr11 61201387 61201410 -89582143 + AT_rich Low_complexity Low_complexity 1 23 0 599 278 5 0 chr11 61201521 61201712 -89581841 - L1M4 LINE L1 -1538 4608 4417 1072 215 105 0 chr11 61201712 61201931 -89581622 - MER77 LTR ERV1 -178 427 186 3747 245 53 43 chr11 61201931 61202484 -89581069 + L1MD1 LINE L1 2343 2889 -3257 2034 74 0 19 chr11 61202484 61202753 -89580800 - AluY SINE Alu -1 310 47 3747 245 53 43 chr11 61202753 61203507 -89580046 + L1MD1 LINE L1 2889 3663 -2483 1021 186 0 5 chr11 61203525 61203719 -89579834 - MER57A LTR ERV1 0 403 211 1077 76 38 6 chr11 61203749 61203906 -89579647 + L1MA5A LINE L1 6126 6287 -10 1195 154 27 91 chr11 61203934 61204214 -89579339 - MER57A LTR ERV1 -143 291 1 989 158 30 0 chr11 61204273 61204438 -89579115 - FRAM SINE Alu -6 170 1 4895 200 54 65 chr11 61204444 61204885 -89578668 + L1MD1 LINE L1 3742 4186 -2056 2671 52 0 0 chr11 61204885 61205195 -89578358 + AluY SINE Alu 1 310 -1 4895 200 54 65 chr11 61205195 61206305 -89577248 + L1MD1 LINE L1 4186 5233 -1009 1666 183 0 11 chr11 61206305 61206611 -89576942 - AluJb SINE Alu 0 303 1 4895 200 54 65 chr11 61206611 61207597 -89575956 + L1MD1 LINE L1 5233 6228 -14 1163 249 83 30 chr11 61207597 61207970 -89575583 + MLT1G1 LTR MaLR 201 593 -2 2300 102 3 0 chr11 61208253 61208558 -89574995 + AluSq SINE Alu 1 306 -7 34 24 0 0 chr11 61208641 61208682 -89574871 + AT_rich Low_complexity Low_complexity 1 41 0 5277 139 39 7 chr11 61208784 61209641 -89573912 - HSMAR2 DNA Mariner 0 1302 419 1006 80 13 20 chr11 61209642 61209793 -89573760 - HSMAR2 DNA Mariner -1151 151 2 216 97 0 0 chr11 61209798 61209829 -89573724 + (TG)n Simple_repeat Simple_repeat 2 32 0 313 314 65 8 chr11 61210400 61210524 -89573029 + MIR SINE MIR 31 161 -101 25 0 0 0 chr11 61214319 61214344 -89569209 + GC_rich Low_complexity Low_complexity 1 25 0 620 279 58 0 chr11 61217880 61218076 -89565477 - MIR SINE MIR -28 234 30 292 301 49 24 chr11 61218071 61218194 -89565359 - L2 LINE L2 0 3313 3188 * 292 253 110 55 chr11 61219479 61219661 -89563892 - L2 LINE L2 -1 3312 3121 191 253 116 11 chr11 61219765 61219860 -89563693 - L2 LINE L2 -308 2964 2860 186 261 43 14 chr11 61220165 61220234 -89563319 - L2 LINE L2 -1 3271 3201 1759 174 150 84 chr11 61220878 61221471 -89562082 + LTR27 LTR ERV1 3 634 -2 312 83 0 0 chr11 61221526 61221574 -89561979 + (CA)n Simple_repeat Simple_repeat 2 49 0 417 232 232 5 chr11 61221641 61221839 -89561714 - MIR SINE MIR 0 262 20 289 341 42 0 chr11 61224275 61224417 -89559136 + MIR SINE MIR 46 192 -68 851 183 0 0 chr11 61224423 61224560 -89558993 + FRAM SINE Alu 1 137 -39 555 240 154 23 chr11 61224594 61224815 -89558738 - MIR SINE MIR -10 252 3 610 252 80 9 chr11 61225873 61226099 -89557454 + MIR SINE MIR 15 256 -6 341 240 112 48 chr11 61228247 61228372 -89555181 - MIR3 SINE MIR -46 162 30 414 250 33 17 chr11 61228855 61229002 -89554551 + MIR SINE MIR 50 198 -64 304 263 25 0 chr11 61229095 61229175 -89554378 + L2 LINE L2 3232 3313 0 183 277 36 12 chr11 61229534 61229617 -89553936 + MER5A DNA MER1_type 1 85 -104 665 260 170 25 chr11 61229714 61230269 -89553284 - L2 LINE L2 -1 3312 2673 226 226 62 0 chr11 61230971 61231077 -89552476 + MIR SINE MIR 32 144 -69 213 279 192 10 chr11 61231237 61231341 -89552212 + MIR SINE MIR 34 156 -106 182 324 0 0 chr11 61231624 61231695 -89551858 + MIR SINE MIR 175 245 -17 483 246 8 8 chr11 61231945 61232075 -89551478 - MIR SINE MIR -50 212 83 1051 150 82 24 chr11 61233107 61233314 -89550239 + MER20 DNA MER1_type 1 219 0 352 274 106 8 chr11 61234787 61234915 -89548638 + MIR SINE MIR 35 172 -54 230 281 0 0 chr11 61235800 61235857 -89547696 + MIR SINE MIR 97 153 -109 702 282 30 5 chr11 61236169 61236371 -89547182 - MIR SINE MIR -48 214 8 241 279 38 13 chr11 61236380 61236459 -89547094 - MER5A DNA MER1_type -75 114 34 1341 242 81 8 chr11 61237161 61237554 -89545999 - L1MC4a LINE L1 -1804 6004 5583 471 268 66 35 chr11 61237784 61237982 -89545571 - L2 LINE L2 -2 3311 3108 2741 128 52 2 chr11 61238185 61238646 -89544907 + MER1A DNA MER1_type 1 529 0 201 303 109 25 chr11 61240803 61240922 -89542631 + MIR3 SINE MIR 13 141 -67 229 304 222 18 chr11 61240956 61241127 -89542426 - MIR SINE MIR -10 252 47 2186 138 33 25 chr11 61241616 61241977 -89541576 - THE1B LTR MaLR 0 364 1 242 222 0 0 chr11 61242058 61242112 -89541441 + MER5A DNA MER1_type 18 71 -118 2063 170 5 35 chr11 61242582 61242958 -89540595 - MLT1A1 LTR MaLR 0 365 1 575 256 40 30 chr11 61243890 61244089 -89539464 + MIR SINE MIR 21 221 -41 283 205 31 102 chr11 61244251 61244378 -89539175 + MIR SINE MIR 12 129 -133 5208 141 62 7 chr11 61244398 61245307 -89538246 - Tigger3b DNA MER2_type 0 1231 273 550 198 0 21 chr11 61245308 61245404 -89538149 - Tigger3b DNA MER2_type -1133 98 5 401 289 68 16 chr11 61245939 61246163 -89537390 - MIR SINE MIR -10 252 19 214 184 0 0 chr11 61247440 61247478 -89536075 + (TG)n Simple_repeat Simple_repeat 1 38 0 237 65 0 0 chr11 61248129 61248160 -89535393 + (TA)n Simple_repeat Simple_repeat 1 31 0 321 26 0 0 chr11 61251364 61251402 -89532151 + (TG)n Simple_repeat Simple_repeat 2 39 0 426 39 0 0 chr11 61251463 61251515 -89532038 + (TG)n Simple_repeat Simple_repeat 2 53 0 1953 164 13 0 chr11 61256016 61256321 -89527232 - 7SLRNA srpRNA srpRNA -11 309 1 292 247 132 34 chr11 61256811 61256953 -89526600 + L1ME4a LINE L1 5713 5840 -281 3558 161 46 11 chr11 61256953 61257567 -89525986 - MER41B LTR ERV1 0 635 1 292 247 132 34 chr11 61257567 61257746 -89525807 + L1ME4a LINE L1 5840 6099 -22 1911 129 0 18 chr11 61257875 61258155 -89525398 + AluSx SINE Alu 1 275 -37 201 39 0 0 chr11 61258164 61258190 -89525363 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 658 179 43 0 chr11 61259393 61259510 -89524043 + FLAM_A SINE Alu 13 134 -8 510 17 0 0 chr11 61259512 61259571 -89523982 + (GGAA)n Simple_repeat Simple_repeat 4 62 0 1742 11 0 5 chr11 61259671 61259860 -89523693 - AluYb8 SINE Alu -130 188 1 250 296 0 104 chr11 61259943 61260068 -89523485 - L3 LINE CR1 -135 1442 1331 598 237 15 0 chr11 61260205 61260336 -89523217 + MLT1E1 LTR MaLR 520 652 -2 265 284 12 12 chr11 61260452 61260533 -89523020 - L2 LINE L2 -4 3268 3188 187 333 10 50 chr11 61262968 61263067 -89520486 - L2 LINE L2 -527 2787 2693 308 347 91 0 chr11 61264063 61264239 -89519314 - L3 LINE CR1 -1 1576 1385 213 330 9 70 chr11 61265040 61265155 -89518398 - MIR3 SINE MIR -48 160 53 229 312 28 37 chr11 61265606 61265715 -89517838 - L2 LINE L2 0 3272 3165 2098 128 3 13 chr11 61265994 61266298 -89517255 - AluSx SINE Alu -11 301 1 1850 146 44 6 chr11 61266328 61266644 -89516909 - MER51B LTR ERV1 0 377 50 560 105 147 11 chr11 61266656 61266751 -89516802 - MER51A LTR ERV1 -526 108 1 1780 150 11 0 chr11 61266752 61267025 -89516528 - MER51A-int LTR ERV1 0 7816 7541 1829 70 0 0 chr11 61267030 61267245 -89516308 + AluY SINE Alu 1 215 -96 436 309 60 60 chr11 61267247 61267545 -89516008 - MER51A-int LTR ERV1 -457 6072 5860 * 1271 112 0 11 chr11 61267530 61267718 -89515835 - MER51A-int LTR ERV1 -2125 5995 5810 25110 129 28 14 chr11 61267719 61271944 -89511609 - MER51A-int LTR ERV1 -2597 5523 1239 24443 168 24 25 chr11 61271957 61278409 -89505144 - L1PA10 LINE L1 -10 6473 10 5411 111 69 2 chr11 61278421 61279271 -89504282 - MER51A-int LTR ERV1 -6871 1249 343 2190 175 17 76 chr11 61279275 61279849 -89503704 - MER51A-int LTR ERV1 -3776 509 337 465 66 66 110 chr11 61279862 61279953 -89503600 - MER51A-int LTR ERV1 -7729 87 1 890 127 121 12 chr11 61279953 61280119 -89503434 - MER51A LTR ERV1 0 634 451 1164 93 25 0 chr11 61280119 61280280 -89503273 - AluSg/x SINE Alu 0 310 146 437 267 85 48 chr11 61281122 61281363 -89502190 - L1MC4a LINE L1 -399 5769 5666 1973 110 92 0 chr11 61281363 61281645 -89501908 - AluSg SINE Alu -2 308 1 437 267 85 48 chr11 61281645 61281690 -89501863 - L1MC4a LINE L1 -502 5666 5624 198 263 105 21 chr11 61281781 61281876 -89501677 - MIR SINE MIR -52 210 108 219 336 29 36 chr11 61281878 61282015 -89501538 - MIR SINE MIR -55 207 72 2477 66 0 13 chr11 61282307 61282609 -89500944 - AluY SINE Alu -9 302 5 2178 110 0 10 chr11 61283183 61283483 -89500070 - AluSg SINE Alu -13 297 1 2473 75 0 3 chr11 61283534 61283841 -89499712 - AluY SINE Alu -5 306 1 23 33 0 0 chr11 61283841 61283871 -89499682 + AT_rich Low_complexity Low_complexity 1 30 0 373 214 0 71 chr11 61285186 61285284 -89498269 + MLT1D LTR MaLR 1 91 -414 550 200 197 8 chr11 61285290 61285454 -89498099 + MLT1D LTR MaLR 212 389 -78 499 159 6 38 chr11 61285858 61285884 -89497669 + (TCTCTG)n Simple_repeat Simple_repeat 1 26 -780 2608 146 14 25 chr11 61285884 61286315 -89497238 + MSTB LTR MaLR 1 426 0 499 159 6 38 chr11 61286315 61286691 -89496862 + (TCTCTG)n Simple_repeat Simple_repeat 26 806 0 236 352 29 9 chr11 61286973 61287078 -89496475 - MIR3 SINE MIR -38 170 64 346 265 183 31 chr11 61287544 61287672 -89495881 - MIR3 SINE MIR -48 160 11 296 238 57 19 chr11 61288247 61288352 -89495201 + L1MEd LINE L1 92 200 -5919 373 368 0 17 chr11 61288659 61288833 -89494720 + L1MEd LINE L1 600 770 -5349 571 250 80 69 chr11 61288923 61289111 -89494442 - MIR3 SINE MIR 0 208 19 286 300 107 13 chr11 61289944 61290094 -89493459 - L2 LINE L2 -1 3312 3149 928 137 60 22 chr11 61290579 61290761 -89492792 - MER53 DNA DNA 0 189 1 250 358 63 32 chr11 61290934 61291124 -89492429 - L2 LINE L2 -177 3095 2900 448 231 139 40 chr11 61291765 61291938 -89491615 + L3 LINE CR1 1388 1577 0 789 254 57 5 chr11 61291950 61292159 -89491394 + MER58A DNA MER1_type 4 223 -1 217 351 77 60 chr11 61292447 61292615 -89490938 - MIR SINE MIR -6 256 86 365 306 8 0 chr11 61293490 61293611 -89489942 + MER117 DNA MER1_type 59 180 -17 270 71 18 36 chr11 61293644 61293700 -89489853 + (TTTTC)n Simple_repeat Simple_repeat 4 58 0 549 0 0 0 chr11 61293700 61293761 -89489792 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 576 183 157 25 chr11 61293884 61294081 -89489472 + L1MB8 LINE L1 5955 6177 -1 321 93 0 0 chr11 61294711 61294765 -89488788 + (TATG)n Simple_repeat Simple_repeat 2 55 0 1835 173 0 3 chr11 61294765 61295048 -89488505 - AluSx SINE Alu -26 286 5 198 0 0 0 chr11 61295540 61295562 -89487991 + (T)n Simple_repeat Simple_repeat 1 22 0 183 42 0 0 chr11 61296872 61296896 -89486657 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2151 92 0 27 chr11 61297267 61297559 -89485994 + AluSc SINE Alu 21 304 -5 337 337 62 17 chr11 61297596 61297774 -89485779 + L1MEd LINE L1 2 187 -5932 534 207 0 37 chr11 61298249 61298384 -89485169 + L1MB7 LINE L1 5754 5883 -301 386 326 69 28 chr11 61298516 61298734 -89484819 - L1MEd LINE L1 -5448 671 445 2195 123 0 25 chr11 61299154 61299470 -89484083 - AluSx SINE Alu -2 310 3 213 178 0 0 chr11 61299713 61299758 -89483795 + T-rich Low_complexity Low_complexity 1 45 0 873 141 0 7 chr11 61300006 61300141 -89483412 + AluJb SINE Alu 170 303 -9 1399 180 32 42 chr11 61300565 61300848 -89482705 - AluJo SINE Alu -3 309 30 513 256 146 63 chr11 61301746 61301987 -89481566 + L1ME4a LINE L1 5572 5792 -329 792 176 0 22 chr11 61301987 61302123 -89481430 + FLAM_A SINE Alu 1 133 0 513 256 146 63 chr11 61302123 61302389 -89481164 + L1ME4a LINE L1 5792 6121 0 392 280 95 24 chr11 61304329 61304497 -89479056 - MIR3 SINE MIR -20 188 9 180 344 67 0 chr11 61304540 61304630 -89478923 + MIR SINE MIR 33 128 -80 340 342 70 0 chr11 61304919 61305033 -89478520 + MIR SINE MIR 61 182 -80 258 32 0 0 chr11 61305991 61306022 -89477531 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 253 311 190 28 chr11 61306058 61306347 -89477206 - L2 LINE L2 -82 3190 2855 232 278 52 41 chr11 61306645 61306742 -89476811 + MIR SINE MIR 21 118 -90 440 328 69 5 chr11 61307340 61307544 -89476009 + MIR SINE MIR 25 241 -21 201 310 35 11 chr11 61307897 61307984 -89475569 + MIR SINE MIR 58 146 -62 1836 184 3 3 chr11 61307988 61308293 -89475260 + AluJb SINE Alu 1 305 -7 249 249 106 40 chr11 61308785 61308920 -89474633 + MIR SINE MIR 17 160 -68 1790 162 16 16 chr11 61309391 61309700 -89473853 + AluJo SINE Alu 1 309 -3 1575 66 5 15 chr11 61311009 61311205 -89472348 + AluY SINE Alu 99 292 -19 303 304 35 35 chr11 61311566 61311681 -89471872 - MER5A DNA MER1_type -28 161 47 228 231 19 0 chr11 61312107 61312159 -89471394 - L2 LINE L2 -73 3240 3188 1004 136 146 19 chr11 61312220 61312426 -89471127 - MLT1A1 LTR MaLR 0 365 134 883 144 0 8 chr11 61312428 61312553 -89471000 + AluJb SINE Alu 1 124 -188 383 274 54 54 chr11 61313098 61313357 -89470196 + HAL1 LINE L1 1277 1535 -972 486 301 67 67 chr11 61313868 61313983 -89469570 + L1M4 LINE L1 2169 2283 -3863 1749 175 3 16 chr11 61313983 61314291 -89469262 + AluJo SINE Alu 1 304 -8 486 301 67 67 chr11 61314291 61314520 -89469033 + L1M4 LINE L1 2282 2513 -3633 399 198 113 19 chr11 61314530 61314636 -89468917 + MIR SINE MIR 28 143 -119 285 267 27 0 chr11 61314810 61314885 -89468668 + MIR SINE MIR 98 174 -88 314 344 75 12 chr11 61315140 61315300 -89468253 - MIR SINE MIR -65 197 28 208 121 0 0 chr11 61315495 61315528 -89468025 + (CA)n Simple_repeat Simple_repeat 1 33 0 197 224 35 17 chr11 61316755 61316813 -89466740 + MIR SINE MIR 55 113 -95 547 232 27 51 chr11 61317248 61317445 -89466108 + MER61D LTR ERV1 339 501 0 8386 211 29 16 chr11 61317460 61319142 -89464411 + MER52-int LTR ERV1 1824 3527 -3564 2126 116 0 20 chr11 61319142 61319445 -89464108 + AluSg SINE Alu 14 310 0 41672 77 9 5 chr11 61319572 61322297 -89461256 - HERVL-A1 LTR ERVL -55 5599 2886 2297 118 0 16 chr11 61322297 61322611 -89460942 + AluSx SINE Alu 1 309 -3 41672 77 9 5 chr11 61322611 61325462 -89458091 - HERVL-A1 LTR ERVL -2768 2886 1 1532 104 79 4 chr11 61325462 61325702 -89457851 - MLT2A1 LTR ERVL 0 444 187 1093 154 28 0 chr11 61325831 61326013 -89457540 + MER52-int LTR ERV1 5256 5442 -1649 1862 159 12 18 chr11 61326014 61326341 -89457212 + MER52-int LTR ERV1 5548 5872 -1219 249 33 0 0 chr11 61329173 61329203 -89454350 + (TG)n Simple_repeat Simple_repeat 1 30 0 1492 158 65 10 chr11 61333876 61334168 -89449385 - 7SLRNA srpRNA srpRNA -10 310 3 3939 112 12 54 chr11 61334806 61335291 -89448262 - MER41B LTR ERV1 0 635 184 1901 164 0 3 chr11 61335291 61335601 -89447952 - AluSx SINE Alu -1 311 3 3939 112 12 54 chr11 61335601 61335778 -89447775 - MER41B LTR ERV1 -451 184 1 12224 175 90 77 chr11 61335778 61337478 -89446075 - MER41B-int LTR ERV1 0 5946 4269 1463 155 98 32 chr11 61337478 61337755 -89445798 - AluSx SINE Alu -17 295 1 12224 175 90 77 chr11 61337755 61340603 -89442950 - MER41B-int LTR ERV1 -1677 4269 1080 3410 128 16 4 chr11 61340589 61341091 -89442462 - MER41B-int LTR ERV1 -5313 633 126 * 544 248 8 0 chr11 61341392 61341637 -89441916 + FLAM_A SINE Alu 5 250 0 229 49 0 49 chr11 61341655 61341726 -89441827 + (GAATG)n Simple_repeat Simple_repeat 1 106 0 229 49 0 49 chr11 61341726 61341767 -89441786 + (GAATG)n Simple_repeat Simple_repeat 5 43 0 269 76 8 92 chr11 61341781 61341900 -89441653 + (ATATG)n Simple_repeat Simple_repeat 2 110 0 195 184 0 0 chr11 61341941 61341979 -89441574 + GA-rich Low_complexity Low_complexity 4 41 0 851 101 5 48 chr11 61341979 61342167 -89441386 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 243 125 0 0 chr11 61342187 61342227 -89441326 + (GGGGA)n Simple_repeat Simple_repeat 4 43 0 2070 114 3 14 chr11 61343657 61343954 -89439599 + AluSx SINE Alu 1 294 -18 668 258 55 0 chr11 61344005 61344187 -89439366 - MER58A DNA MER1_type -4 220 29 253 331 15 45 chr11 61344874 61345007 -89438546 + L2 LINE L2 2690 2818 -496 13366 181 23 42 chr11 61346974 61350049 -89433504 - L1 LINE L1 -908 5238 2221 23 33 0 0 chr11 61350579 61350609 -89432944 + AT_rich Low_complexity Low_complexity 1 30 0 216 86 0 0 chr11 61351193 61351228 -89432325 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 377 289 185 0 chr11 61353923 61354058 -89429495 + MIR SINE MIR 7 166 -96 589 329 25 11 chr11 61354320 61354594 -89428959 + L1ME LINE L1 5378 5655 -511 1662 189 60 18 chr11 61354714 61355111 -89428442 + Charlie1 DNA MER1_type 2144 2557 -204 24 32 0 0 chr11 61355112 61355143 -89428410 + AT_rich Low_complexity Low_complexity 1 31 0 697 43 108 0 chr11 61355143 61355236 -89428317 + MER85 DNA T2_type 1 103 -36 4745 65 12 0 chr11 61355236 61355838 -89427715 + L1PA6 LINE L1 5546 6154 0 234 0 71 24 chr11 61355866 61355908 -89427645 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 363 45 0 0 chr11 61355909 61355953 -89427600 + MER85 DNA T2_type 92 135 -4 459 263 268 0 chr11 61356096 61356301 -89427252 - MIR SINE MIR 0 262 3 25 0 0 0 chr11 61356410 61356435 -89427118 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr11 61356557 61356599 -89426954 + AT_rich Low_complexity Low_complexity 1 42 0 354 284 90 8 chr11 61356737 61356871 -89426682 + MIR SINE MIR 63 207 -55 416 233 47 31 chr11 61357789 61357918 -89425635 + MER94 DNA DNA 1 131 -3 579 256 187 5 chr11 61357958 61358161 -89425392 + MIR SINE MIR 15 254 -8 37392 86 13 9 chr11 61358456 61364573 -89418980 - L1PA6 LINE L1 -2 6152 11 25 51 0 0 chr11 61364621 61364660 -89418893 + AT_rich Low_complexity Low_complexity 1 39 0 246 136 0 0 chr11 61364854 61364898 -89418655 + (TC)n Simple_repeat Simple_repeat 1 44 0 563 225 39 39 chr11 61364909 61365020 -89418533 - L1MC5 LINE L1 -518 7443 7330 1916 152 10 10 chr11 61365020 61365323 -89418230 - AluJb SINE Alu -9 303 1 563 225 39 39 chr11 61365323 61365393 -89418160 - L1MC5 LINE L1 -630 7331 7262 189 0 0 0 chr11 61365683 61365704 -89417849 + (TC)n Simple_repeat Simple_repeat 2 22 0 1674 128 12 8 chr11 61365719 61365962 -89417591 - AluSc SINE Alu -29 280 37 347 355 19 7 chr11 61366834 61366989 -89416564 - HERV16 LTR ERVL -787 4977 4821 380 271 155 13 chr11 61367208 61367363 -89416190 - HERV16 LTR ERVL -2070 3694 3518 351 365 66 13 chr11 61367374 61367675 -89415878 - HERV16 LTR ERVL -3622 1374 1058 2354 137 69 0 chr11 61367689 61368097 -89415456 - L1PA16 LINE L1 -2 6164 5729 417 308 50 47 chr11 61368467 61368759 -89414794 - HERV16 LTR ERVL -4348 648 353 2468 103 38 16 chr11 61368759 61369126 -89414427 - THE1C LTR MaLR 0 375 1 417 308 50 47 chr11 61369126 61369171 -89414382 - HERV16 LTR ERVL -4643 353 310 270 267 13 13 chr11 61369445 61369520 -89414033 - LTR16C LTR ERVL -99 392 318 2180 109 0 10 chr11 61369806 61370100 -89413453 + AluY SINE Alu 3 293 -18 5538 156 56 7 chr11 61370156 61371674 -89411879 - L1MA7 LINE L1 -6 6285 4843 207 0 0 0 chr11 61371674 61371697 -89411856 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5538 156 56 7 chr11 61371697 61371995 -89411558 - L1MA7 LINE L1 -1448 4843 4367 1758 117 0 0 chr11 61371995 61372256 -89411297 - AluSx SINE Alu 0 312 64 5538 156 56 7 chr11 61372256 61372279 -89411274 - L1MA7 LINE L1 -1924 4367 4347 659 251 80 27 chr11 61372464 61372651 -89410902 - MLT1I LTR MaLR -15 394 198 1546 197 31 6 chr11 61372672 61372997 -89410556 - L1MA7 LINE L1 -1797 4349 4017 801 291 61 20 chr11 61373554 61373849 -89409704 - MLT1I LTR MaLR -15 394 88 198 275 0 0 chr11 61374632 61374723 -89408830 + (TCTCTG)n Simple_repeat Simple_repeat 4 94 0 471 263 167 29 chr11 61375348 61375654 -89407899 - MLT1I LTR MaLR -64 345 3 25 51 0 0 chr11 61377431 61377470 -89406083 + AT_rich Low_complexity Low_complexity 1 39 0 3935 157 7 2 chr11 61378206 61378823 -89404730 + L1M2 LINE L1 1 620 -6229 1828 149 155 13 chr11 61378823 61379198 -89404355 + MSTA LTR MaLR 1 428 0 295 337 12 0 chr11 61379256 61379339 -89404214 + LTR16A LTR ERVL 359 442 -8 503 273 72 76 chr11 61379442 61379657 -89403896 + L1ME3A LINE L1 5740 5954 -216 189 0 0 0 chr11 61379657 61379678 -89403875 + (CATA)n Simple_repeat Simple_repeat 2 22 0 503 273 72 76 chr11 61379678 61379894 -89403659 + L1ME3A LINE L1 5954 6169 -1 351 316 136 7 chr11 61380707 61380862 -89402691 + MIR SINE MIR 83 257 -5 2075 114 0 10 chr11 61381698 61381987 -89401566 + AluSc SINE Alu 1 286 -23 9944 191 28 5 chr11 61382017 61383944 -89399609 - L1P5 LINE L1 -499 6368 4305 2296 133 21 21 chr11 61383944 61384319 -89399234 - THE1C LTR MaLR 0 375 1 9944 191 28 5 chr11 61384319 61385995 -89397558 - L1P5 LINE L1 -2562 4305 2669 6737 69 0 0 chr11 61386016 61387155 -89396398 - L1PA5 LINE L1 0 6154 5010 40613 51 5 1 chr11 61387161 61393298 -89390255 - L1PA3 LINE L1 -3 6152 1 10261 214 30 1 chr11 61393296 61395320 -89388233 - L1P5 LINE L1 -4704 2148 66 * 5672 216 28 10 chr11 61395329 61396808 -89386745 - L1 LINE L1 -2388 4779 3274 5212 246 34 89 chr11 61396816 61399477 -89384076 - L1 LINE L1 -4642 2526 2 237 222 0 0 chr11 61399616 61399679 -89383874 + GA-rich Low_complexity Low_complexity 3 65 0 540 194 52 58 chr11 61400515 61400706 -89382847 + L1MA9 LINE L1 6085 6274 -38 21 0 0 0 chr11 61400706 61400727 -89382826 + AT_rich Low_complexity Low_complexity 1 21 0 720 270 33 28 chr11 61401105 61401320 -89382233 - MIR SINE MIR -32 230 15 229 355 13 0 chr11 61401362 61401438 -89382115 + MIR SINE MIR 111 187 -75 379 291 34 0 chr11 61401535 61401652 -89381901 + MIR3 SINE MIR 64 184 -24 2462 78 3 73 chr11 61403412 61403796 -89379757 - L1PA10 LINE L1 -4 6164 5808 478 251 106 23 chr11 61404251 61404275 -89379278 - MIR SINE MIR -8 254 233 2003 136 14 0 chr11 61404275 61404570 -89378983 - AluSx SINE Alu -13 299 1 478 251 106 23 chr11 61404570 61404762 -89378791 - MIR SINE MIR -29 233 15 206 239 22 0 chr11 61404762 61404808 -89378745 + CT-rich Low_complexity Low_complexity 1 47 0 318 26 0 0 chr11 61404961 61405000 -89378553 + (TG)n Simple_repeat Simple_repeat 1 39 0 314 299 117 34 chr11 61405386 61405650 -89377903 - L1M4 LINE L1 -1197 4949 4664 256 357 113 13 chr11 61406154 61406392 -89377161 - MIR SINE MIR 0 262 1 21 36 0 0 chr11 61406583 61406611 -89376942 + AT_rich Low_complexity Low_complexity 1 28 0 2064 147 0 0 chr11 61406752 61407051 -89376502 - AluSx SINE Alu -13 299 1 21 0 0 0 chr11 61407200 61407221 -89376332 + AT_rich Low_complexity Low_complexity 1 21 0 234 262 122 9 chr11 61409403 61409510 -89374043 + MLT1H LTR MaLR 431 549 0 22 0 0 0 chr11 61409514 61409536 -89374017 + AT_rich Low_complexity Low_complexity 1 22 0 727 254 41 10 chr11 61409544 61409741 -89373812 + MIR SINE MIR 39 241 -21 370 280 129 38 chr11 61409722 61409908 -89373645 - MIR SINE MIR -8 254 52 * 412 107 0 27 chr11 61410154 61410229 -89373324 + L1PA12 LINE L1 1 73 -7508 13213 173 14 10 chr11 61410232 61413411 -89370142 + L1PA12 LINE L1 270 3740 -3844 231 273 39 26 chr11 61413439 61413593 -89369960 + L1M4 LINE L1 4522 4677 -1469 331 336 37 15 chr11 61413634 61413768 -89369785 + L1M3c LINE L1 2 138 -6003 333 94 0 19 chr11 61413786 61413839 -89369714 - MLT2B3 LTR ERVL -1 553 502 20769 117 8 17 chr11 61415027 61418443 -89365110 + L1P4 LINE L1 11 3393 -2753 7663 25 1 0 chr11 61418443 61419838 -89363715 + L1PA3 LINE L1 4757 6152 -3 1310 137 13 13 chr11 61419838 61420071 -89363482 + L1P4 LINE L1 5474 5706 -460 534 249 97 2 chr11 61420589 61420769 -89362784 + MIR SINE MIR 16 219 -43 24 32 0 0 chr11 61422063 61422094 -89361459 + AT_rich Low_complexity Low_complexity 1 31 0 389 264 24 56 chr11 61422834 61422959 -89360594 - MIR3 SINE MIR -24 184 64 736 208 52 4 chr11 61422989 61423239 -89360314 - L1 LINE L1 -2812 4036 3775 * 3708 228 47 6 chr11 61423238 61424636 -89358917 - L1 LINE L1 -3697 3151 1695 40613 54 2 1 chr11 61424638 61430778 -89352775 - L1PA4 LINE L1 -7 6148 2 1670 347 66 21 chr11 61430809 61431766 -89351787 - L1 LINE L1 -5162 1687 688 529 335 157 5 chr11 61432111 61432481 -89351072 - L1 LINE L1 -6409 440 15 5091 156 20 6 chr11 61432685 61433984 -89349569 + L1PA14 LINE L1 4848 6163 0 1415 173 0 8 chr11 61435616 61435876 -89347677 + Tigger2 DNA MER2_type 1 258 -2460 1195 207 123 4 chr11 61435886 61436147 -89347406 - MSTD LTR MaLR -49 347 56 * 14410 143 20 20 chr11 61436139 61438517 -89345036 + Tigger2 DNA MER2_type 242 2619 -99 1103 314 105 38 chr11 61439406 61440419 -89343134 - L1MEd LINE L1 -4980 1139 59 643 282 62 24 chr11 61440607 61440816 -89342737 - MIR SINE MIR -15 247 31 1307 109 91 0 chr11 61443207 61443417 -89340136 + MER30 DNA MER1_type 1 229 -1 2203 164 42 0 chr11 61443491 61443868 -89339685 + MER57A LTR ERV1 1 393 -10 2185 165 61 3 chr11 61443877 61444240 -89339313 + MER57A-int LTR ERV1 1 384 -7153 1621 147 0 21 chr11 61444284 61444563 -89338990 + MER57A-int LTR ERV1 361 633 -5313 * 12303 151 48 20 chr11 61444559 61448239 -89335314 + MER57A-int LTR ERV1 1083 5687 -2129 13171 99 20 9 chr11 61448240 61448538 -89335015 + MER57A-int LTR ERV1 5256 5549 -1988 14007 37 1 0 chr11 61448538 61451029 -89332524 + L1PA3 LINE L1 3672 6154 -1 13171 99 20 9 chr11 61451029 61452601 -89330952 + MER57A-int LTR ERV1 5549 7146 -391 834 69 23 31 chr11 61452601 61452731 -89330822 + LTR54B LTR ERV1 3 131 -367 1268 134 147 0 chr11 61452733 61452957 -89330596 + MER57A-int LTR ERV1 7281 7537 0 2223 177 10 0 chr11 61452957 61453353 -89330200 + MER57A LTR ERV1 1 400 -3 236 263 0 0 chr11 61454606 61454663 -89328890 + MLT1F LTR MaLR 484 540 -2 279 0 0 0 chr11 61454967 61454998 -89328555 + (TTA)n Simple_repeat Simple_repeat 3 33 0 4104 35 0 0 chr11 61454998 61455478 -89328075 - L1PA3 LINE L1 -18 6137 5658 180 0 0 0 chr11 61455877 61455897 -89327656 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1111 289 87 81 chr11 61456023 61457041 -89326512 - HAL1 LINE L1 -1475 1032 8 24 0 0 0 chr11 61457153 61457177 -89326376 + AT_rich Low_complexity Low_complexity 1 24 0 364 205 13 26 chr11 61457899 61457977 -89325576 - L2 LINE L2 0 3313 3237 1900 155 42 33 chr11 61458103 61458464 -89325089 + THE1B LTR MaLR 1 364 0 573 118 101 0 chr11 61458592 61458711 -89324842 + L1MA7 LINE L1 6155 6285 -6 2416 90 58 0 chr11 61458777 61459123 -89324430 + L1PA11 LINE L1 5807 6172 -2 488 288 122 44 chr11 61462309 61462414 -89321139 - MIR SINE MIR 0 262 167 5768 66 15 1 chr11 61462414 61463170 -89320383 - MER4E LTR ERV1 0 766 1 488 288 122 44 chr11 61463170 61463293 -89320260 - MIR SINE MIR -95 167 16 627 274 22 6 chr11 61463428 61463607 -89319946 - MIR SINE MIR 0 262 81 2254 120 63 80 chr11 61463986 61464412 -89319141 - MSTA LTR MaLR -9 419 1 467 250 56 14 chr11 61466190 61466334 -89317219 + MIR3 SINE MIR 28 177 -31 256 233 9 35 chr11 61466575 61466691 -89316862 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 1799 139 32 7 chr11 61467117 61467398 -89316155 + AluSx SINE Alu 1 288 -24 1150 127 0 39 chr11 61467414 61467595 -89315958 + AluJb SINE Alu 124 297 -15 205 283 0 33 chr11 61467740 61467800 -89315753 - L3 LINE CR1 -830 747 690 183 264 38 0 chr11 61467881 61467934 -89315619 - L3 LINE CR1 -1187 390 336 428 221 21 79 chr11 61467935 61468008 -89315545 + L2 LINE L2 3182 3245 -68 3335 149 20 74 chr11 61468008 61468738 -89314815 - LTR8 LTR ERV1 0 691 1 428 221 21 79 chr11 61468738 61468804 -89314749 + L2 LINE L2 3245 3313 0 420 308 8 8 chr11 61468949 61469079 -89314474 - MIR SINE MIR -4 258 129 625 271 62 46 chr11 61469711 61469951 -89313602 + MIR SINE MIR 8 251 -11 273 252 197 8 chr11 61470134 61470261 -89313292 + MIR3 SINE MIR 50 200 -8 2548 54 0 25 chr11 61470733 61471050 -89312503 + AluY SINE Alu 1 309 -2 2125 120 12 6 chr11 61471156 61471480 -89312073 + L1PB2 LINE L1 5826 6151 0 266 232 29 0 chr11 61471702 61471771 -89311782 + L1MB2 LINE L1 6060 6130 -41 2532 204 36 28 chr11 61471772 61472302 -89311251 + MLT2B3 LTR ERVL 1 534 -20 290 189 0 0 chr11 61472317 61472370 -89311183 + Ricksha DNA DNA 850 902 -2344 248 156 0 0 chr11 61472370 61472415 -89311138 + L1MB2 LINE L1 6125 6169 -2 277 313 97 49 chr11 61472853 61472997 -89310556 + MIR3 SINE MIR 19 169 -39 216 97 0 0 chr11 61475118 61475149 -89308404 + (CA)n Simple_repeat Simple_repeat 2 32 0 3691 226 44 87 chr11 61475447 61475869 -89307684 + L1ME LINE L1 3796 4234 -1932 1980 138 43 27 chr11 61475869 61476238 -89307315 - THE1C LTR MaLR 0 375 1 3691 226 44 87 chr11 61476238 61477579 -89305974 + L1ME LINE L1 4234 5477 -689 3886 158 24 7 chr11 61477602 61478325 -89305228 + L1MA7 LINE L1 5556 6290 -1 455 305 183 0 chr11 61478927 61479091 -89304462 + MIR SINE MIR 50 243 -19 2981 147 24 4 chr11 61480003 61480514 -89303039 - L1MC1 LINE L1 -5 6328 5808 2124 151 85 15 chr11 61480829 61481227 -89302326 + MSTB LTR MaLR 1 426 0 187 292 0 0 chr11 61482218 61482266 -89301287 - L2 LINE L2 -18 3254 3207 629 298 50 41 chr11 61482961 61483051 -89300502 - MIR SINE MIR -14 248 160 1644 191 3 29 chr11 61483051 61483360 -89300193 - AluJb SINE Alu -11 301 1 629 298 50 41 chr11 61483360 61483487 -89300066 - MIR SINE MIR -102 160 29 639 238 139 14 chr11 61484798 61484876 -89298677 - MIR SINE MIR 0 262 195 672 57 40 16 chr11 61484876 61485000 -89298553 + (TAGA)n Simple_repeat Simple_repeat 3 129 0 639 238 139 14 chr11 61485000 61485144 -89298409 - MIR SINE MIR -67 195 12 2224 102 16 0 chr11 61485153 61485458 -89298095 + AluSp SINE Alu 1 310 -3 200 256 0 0 chr11 61485742 61485781 -89297772 - L2 LINE L2 -12 3260 3222 * 354 327 132 6 chr11 61485779 61485938 -89297615 - MIR SINE MIR -81 181 3 219 146 0 0 chr11 61485978 61486019 -89297534 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 186 43 0 0 chr11 61487308 61487331 -89296222 + (A)n Simple_repeat Simple_repeat 1 23 0 457 283 114 14 chr11 61487363 61487582 -89295971 - MIR SINE MIR -1 261 21 6852 82 38 0 chr11 61487996 61489463 -89294090 - L1PA10 LINE L1 -4 6164 4664 244 333 0 0 chr11 61490027 61490096 -89293457 - MIR SINE MIR -13 249 181 1465 99 85 0 chr11 61490946 61491158 -89292395 + MER30 DNA MER1_type 1 230 0 350 299 199 25 chr11 61491568 61491769 -89291784 + L2 LINE L2 3020 3255 -17 426 192 168 16 chr11 61492830 61492955 -89290598 - L2 LINE L2 -1 3312 3169 243 306 176 0 chr11 61493031 61493139 -89290414 - MIR SINE MIR -116 146 20 668 266 90 40 chr11 61493838 61494214 -89289339 - L1MC/D LINE L1 -2001 5807 5413 635 128 0 46 chr11 61494215 61494324 -89289229 - FLAM_C SINE Alu -1 142 39 330 315 150 11 chr11 61494428 61494688 -89288865 - L1MC/D LINE L1 -842 5304 5009 1383 189 68 18 chr11 61494825 61495106 -89288447 - AluJb SINE Alu -17 295 1 6666 90 12 4 chr11 61495118 61496107 -89287446 - L1PA13 LINE L1 0 6163 5156 230 264 57 38 chr11 61496145 61496251 -89287302 + L1M4 LINE L1 5612 5719 -459 2159 106 3 0 chr11 61496708 61496991 -89286562 + AluSx SINE Alu 1 284 -28 261 0 0 0 chr11 61496991 61497020 -89286533 + (CA)n Simple_repeat Simple_repeat 2 30 0 34 0 0 0 chr11 61497337 61497371 -89286182 + AT_rich Low_complexity Low_complexity 1 34 0 2407 84 0 0 chr11 61497723 61498020 -89285533 - AluY SINE Alu -14 297 1 1802 146 7 31 chr11 61498125 61498419 -89285134 - AluJo SINE Alu -23 289 3 1928 193 48 79 chr11 61498975 61499456 -89284097 - MER31B LTR ERV1 0 466 1 319 321 5 75 chr11 61499463 61499650 -89283903 + MIR SINE MIR 41 214 -48 2387 67 0 0 chr11 61501425 61501749 -89281804 - AluY SINE Alu 0 324 1 461 248 76 0 chr11 61502539 61502644 -89280909 + FLAM_A SINE Alu 20 132 -10 547 233 140 21 chr11 61502644 61502837 -89280716 - MER106A DNA MER1_type -20 216 1 273 146 0 0 chr11 61502966 61503014 -89280539 + (TG)n Simple_repeat Simple_repeat 1 48 0 1682 149 21 28 chr11 61503639 61503958 -89279595 + AluSx SINE Alu 9 312 0 347 249 207 32 chr11 61504357 61504574 -89278979 - MIR SINE MIR -6 256 2 246 258 16 0 chr11 61504595 61504657 -89278896 - MIR SINE MIR -65 143 81 1852 158 3 10 chr11 61504916 61505208 -89278345 + AluSx SINE Alu 5 294 -18 2081 141 3 0 chr11 61505249 61505561 -89277992 + AluSq SINE Alu 1 313 0 269 242 0 15 chr11 61505834 61505900 -89277653 + GA-rich Low_complexity Low_complexity 1 65 0 1814 228 75 27 chr11 61506668 61506732 -89276821 - L1ME1 LINE L1 -3 6163 6104 2323 98 0 0 chr11 61506732 61507027 -89276526 - AluSg SINE Alu -15 295 1 1814 228 75 27 chr11 61507027 61507480 -89276073 - L1ME1 LINE L1 -62 6104 5621 1002 220 68 43 chr11 61507545 61507839 -89275714 + L1ME LINE L1 5268 5578 -588 2320 102 0 0 chr11 61507839 61508134 -89275419 - AluSx SINE Alu -17 295 1 1002 220 68 43 chr11 61508134 61508178 -89275375 + L1ME LINE L1 5578 5619 -547 216 97 0 0 chr11 61508193 61508224 -89275329 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 296 266 53 0 chr11 61508495 61508589 -89274964 + MIR SINE MIR 29 127 -135 420 111 0 62 chr11 61508711 61508792 -89274761 + L1MA9 LINE L1 6213 6288 -24 1053 99 0 0 chr11 61508794 61508936 -89274617 + AluSg/x SINE Alu 167 308 -4 2180 133 3 0 chr11 61508939 61509247 -89274306 + AluSx SINE Alu 1 309 -3 2182 110 0 19 chr11 61510067 61510375 -89273178 - AluSx SINE Alu -10 302 1 4756 21 0 0 chr11 61510434 61511345 -89272208 + L1P1 LINE L1 4889 5799 -356 998 172 5 9 chr11 61511455 61513083 -89270470 + ALR/Alpha Satellite centromeric 1 1621 -61 666 297 35 59 chr11 61514066 61514322 -89269231 - MIR SINE MIR -11 251 2 331 286 0 79 chr11 61514920 61515046 -89268507 + MIR3 SINE MIR 65 165 -43 2347 89 20 0 chr11 61515274 61515578 -89267975 - AluY SINE Alu -1 310 1 2373 88 3 0 chr11 61515580 61515875 -89267678 - AluSc SINE Alu -13 296 1 25 51 0 0 chr11 61516999 61517038 -89266515 + AT_rich Low_complexity Low_complexity 1 39 0 2311 100 0 0 chr11 61517804 61518104 -89265449 + AluSq SINE Alu 1 300 -13 245 222 40 32 chr11 61518197 61518323 -89265230 + (TA)n Simple_repeat Simple_repeat 2 128 0 2068 113 3 0 chr11 61518417 61518709 -89264844 - AluY SINE Alu -18 293 1 760 154 51 0 chr11 61518740 61518857 -89264696 - FLAM_C SINE Alu -10 123 1 1975 149 13 0 chr11 61519181 61519489 -89264064 - AluSx SINE Alu 0 312 1 1468 147 112 8 chr11 61519522 61519780 -89263773 + AluJb SINE Alu 1 285 -27 37 0 0 0 chr11 61519780 61519817 -89263736 + AT_rich Low_complexity Low_complexity 1 37 0 2336 89 3 0 chr11 61520736 61521029 -89262524 - AluSx SINE Alu -18 294 1 1893 147 3 32 chr11 61521346 61521659 -89261894 - AluJb SINE Alu -7 305 2 312 274 24 0 chr11 61521889 61521973 -89261580 + MIR3 SINE MIR 109 194 -14 2475 61 0 0 chr11 61523240 61523535 -89260018 - AluY SINE Alu -16 295 1 1488 154 77 4 chr11 61523777 61524065 -89259488 + AluJb SINE Alu 6 312 0 2445 68 0 37 chr11 61524075 61524397 -89259156 + AluY SINE Alu 2 311 0 552 164 33 80 chr11 61524398 61524531 -89259022 + L1MC2 LINE L1 6216 6354 -1416 2605 51 0 10 chr11 61524531 61524843 -89258710 + AluY SINE Alu 1 309 -2 1893 149 3 7 chr11 61524847 61525149 -89258404 + AluSx SINE Alu 1 301 -11 552 164 33 80 chr11 61525149 61525167 -89258386 + L1MC2 LINE L1 6357 7769 -1 25 0 0 0 chr11 61525828 61525853 -89257700 + AT_rich Low_complexity Low_complexity 1 25 0 322 324 48 15 chr11 61525943 61526095 -89257458 + MIR SINE MIR 16 170 -70 265 252 37 65 chr11 61526422 61526529 -89257024 - MIR SINE MIR -89 119 16 1573 155 40 25 chr11 61526855 61527133 -89256420 + L1MB1 LINE L1 5887 6168 0 222 311 108 0 chr11 61527431 61527505 -89256048 + L2 LINE L2 3151 3232 -40 49 18 0 0 chr11 61527523 61527579 -89255974 + AT_rich Low_complexity Low_complexity 1 56 0 195 310 26 62 chr11 61529269 61529382 -89254171 + MIR SINE MIR 15 123 -139 194 325 65 0 chr11 61529501 61529578 -89253975 + L2 LINE L2 3227 3308 -5 6973 30 3 0 chr11 61529656 61530423 -89253130 + L1PA3 LINE L1 5387 6155 0 565 318 37 49 chr11 61530734 61531116 -89252437 - L2 LINE L2 -372 2942 2499 31 26 0 0 chr11 61531422 61531460 -89252093 + AT_rich Low_complexity Low_complexity 1 38 0 3430 167 59 40 chr11 61531590 61531959 -89251594 + L1MC3 LINE L1 6751 7111 -674 1834 166 3 7 chr11 61531959 61532254 -89251299 - AluJb SINE Alu -18 294 1 3430 167 59 40 chr11 61532254 61532405 -89251148 + L1MC3 LINE L1 7111 7258 -527 2472 111 22 33 chr11 61532405 61532773 -89250780 + THE1B LTR MaLR 1 364 0 3430 167 59 40 chr11 61532773 61532898 -89250655 + L1MC3 LINE L1 7258 7415 -370 3391 162 13 9 chr11 61532898 61533423 -89250130 - MER1A DNA MER1_type 0 527 1 3430 167 59 40 chr11 61533423 61533482 -89250071 + L1MC3 LINE L1 7415 7471 -314 1453 114 13 25 chr11 61534916 61535152 -89248401 - MER39B LTR ERV1 0 653 421 552 132 19 75 chr11 61535153 61535259 -89248294 + U6 snRNA snRNA 3 102 -5 22 0 0 0 chr11 61535259 61535281 -89248272 + AT_rich Low_complexity Low_complexity 1 22 0 2291 129 6 131 chr11 61535281 61535771 -89247782 - MER39B LTR ERV1 -219 434 6 444 233 33 0 chr11 61536543 61536663 -89246890 - MIR SINE MIR -58 204 81 1313 80 10 40 chr11 61536802 61537002 -89246551 + AluSg/x SINE Alu 101 294 -18 226 286 30 125 chr11 61537253 61537421 -89246132 - MER5A DNA MER1_type -31 158 7 250 246 26 53 chr11 61537433 61537547 -89246006 - MER112 DNA MER1_type -5 255 145 2192 104 3 3 chr11 61537557 61537855 -89245698 + AluSx SINE Alu 2 299 -13 2342 151 27 58 chr11 61537889 61538900 -89244653 + L1MA8 LINE L1 5197 6238 -53 2324 103 0 0 chr11 61538900 61539191 -89244362 + AluSx SINE Alu 1 291 -21 333 93 0 0 chr11 61539191 61539245 -89244308 + (TA)n Simple_repeat Simple_repeat 2 55 0 2342 151 27 58 chr11 61539245 61539361 -89244192 + L1MA8 LINE L1 6236 6262 -29 2110 106 191 6 chr11 61539361 61539718 -89243835 - MSTA LTR MaLR 0 428 6 1880 143 4 4 chr11 61539834 61540106 -89243447 - AluSq SINE Alu -39 274 3 1093 105 116 11 chr11 61540133 61540314 -89243239 + MSTA LTR MaLR 1 200 -228 449 130 0 0 chr11 61540526 61540595 -89242958 + AluSq SINE Alu 148 216 -97 914 230 52 32 chr11 61540604 61541091 -89242462 - L1ME LINE L1 -683 5483 4999 2364 67 10 10 chr11 61541235 61541534 -89242019 + AluSx SINE Alu 1 299 -13 1452 197 79 47 chr11 61541678 61542059 -89241494 + MER31B LTR ERV1 1 393 -73 22 25 0 25 chr11 61542090 61542114 -89241439 + AT_rich Low_complexity Low_complexity 1 25 -14 1616 165 3 44 chr11 61542114 61542258 -89241295 + AluJo SINE Alu 3 130 -182 2298 103 0 3 chr11 61542258 61542560 -89240993 + AluSg SINE Alu 1 301 -9 1616 165 3 44 chr11 61542560 61542712 -89240841 + AluJo SINE Alu 130 287 -25 22 25 0 25 chr11 61542712 61542727 -89240826 + AT_rich Low_complexity Low_complexity 25 39 0 315 49 0 0 chr11 61542878 61542919 -89240634 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 7339 54 2 1 chr11 61542919 61544297 -89239256 - L1PA5 LINE L1 -25 6129 4749 296 312 157 27 chr11 61544403 61544599 -89238954 - L2 LINE L2 -549 2765 2596 4275 139 31 9 chr11 61544599 61545275 -89238278 - LTR8 LTR ERV1 0 691 1 296 312 157 27 chr11 61545275 61545447 -89238106 - L2 LINE L2 -718 2596 2349 1178 169 0 108 chr11 61545457 61545736 -89237817 + MLT1B LTR MaLR 2 250 -140 1902 109 8 19 chr11 61545886 61546152 -89237401 + AluSx SINE Alu 26 288 -24 36 0 0 0 chr11 61546152 61546188 -89237365 + AT_rich Low_complexity Low_complexity 1 36 0 324 162 54 14 chr11 61546209 61546283 -89237270 - MIR SINE MIR -111 151 75 4663 89 3 26 chr11 61546700 61546824 -89236729 - MER41B LTR ERV1 0 635 510 2300 112 0 6 chr11 61546824 61547138 -89236415 + AluSx SINE Alu 1 312 0 4663 89 3 26 chr11 61547138 61547663 -89235890 - MER41B LTR ERV1 -125 510 1 2376 72 0 0 chr11 61547948 61548249 -89235304 - AluSc SINE Alu 0 301 1 268 223 97 0 chr11 61548290 61548393 -89235160 + L1MC4a LINE L1 5315 5427 -2381 746 143 17 0 chr11 61548549 61548668 -89234885 - FLAM_C SINE Alu -21 122 2 384 259 102 7 chr11 61548711 61548858 -89234695 + MIR SINE MIR 45 205 -57 250 255 208 26 chr11 61548917 61549148 -89234405 + L1MC4a LINE L1 5687 5959 -1849 356 167 0 0 chr11 61549664 61549718 -89233835 - AluJ/FLAM SINE Alu -244 58 5 1537 218 48 0 chr11 61550240 61550556 -89232997 + MER69 DNA AcHobo 9 339 -2187 2026 116 3 27 chr11 61550935 61551227 -89232326 + AluSx SINE Alu 1 285 -27 2024 111 40 3 chr11 61551236 61551533 -89232020 + AluSg SINE Alu 1 308 -2 380 239 92 0 chr11 61551536 61551645 -89231908 + MER69 DNA AcHobo 1868 1986 -540 1954 134 14 7 chr11 61551648 61551939 -89231614 + AluSx SINE Alu 1 293 -19 474 274 65 20 chr11 61552525 61552678 -89230875 - MIR SINE MIR -46 216 57 1888 155 0 0 chr11 61552900 61553227 -89230326 + AluSx SINE Alu 1 327 0 2314 101 7 7 chr11 61554584 61554892 -89228661 - AluSx SINE Alu -4 308 1 1249 226 31 56 chr11 61555178 61555501 -89228052 + MLT1E LTR MaLR 279 593 0 367 88 44 15 chr11 61556130 61556198 -89227355 + CT-rich Low_complexity Low_complexity 1 70 0 2059 125 30 0 chr11 61556199 61556495 -89227058 - AluSx SINE Alu -7 305 1 2063 45 0 0 chr11 61557265 61557507 -89226046 - L1PA3 LINE L1 0 6155 5914 649 149 0 9 chr11 61557581 61557695 -89225858 - L1PA15 LINE L1 -4 6161 6049 2773 132 41 10 chr11 61557765 61558258 -89225295 - L1PA16 LINE L1 -107 6061 5548 1929 162 0 3 chr11 61558516 61558818 -89224735 - AluJb SINE Alu -11 301 1 790 271 78 35 chr11 61558919 61559203 -89224350 + MLT1J2 LTR MaLR 1 296 -154 1109 197 5 30 chr11 61559205 61559408 -89224145 + AluJo SINE Alu 4 201 -111 653 280 96 4 chr11 61559408 61559647 -89223906 + MLT1J2 LTR MaLR 188 448 -2 2384 79 0 3 chr11 61560047 61560338 -89223215 - AluSg SINE Alu -19 291 2 1552 138 57 107 chr11 61560625 61560816 -89222737 - AluJb SINE Alu 0 312 142 2255 83 3 14 chr11 61560816 61561105 -89222448 - AluY SINE Alu -25 286 1 1552 138 57 107 chr11 61561105 61561231 -89222322 - AluJb SINE Alu -170 142 11 2366 96 0 13 chr11 61561375 61561689 -89221864 - AluSp SINE Alu -3 310 1 1028 227 10 52 chr11 61563443 61563614 -89219939 - AluSx SINE Alu -7 295 141 2769 25 0 3 chr11 61563614 61563928 -89219625 - AluYb8 SINE Alu -5 313 1 1028 227 10 52 chr11 61563928 61564064 -89219489 - AluSx SINE Alu -161 141 1 294 262 219 65 chr11 61564646 61564797 -89218756 - L1MC4a LINE L1 -104 6017 5891 1408 197 77 0 chr11 61564797 61565071 -89218482 - AluJo SINE Alu -17 295 1 294 262 219 65 chr11 61565071 61565152 -89218401 - L1MC4a LINE L1 -230 5891 5747 310 315 31 15 chr11 61565780 61565910 -89217643 + L2 LINE L2 3168 3299 -14 244 154 0 0 chr11 61565945 61565984 -89217569 + Alu SINE Alu 1 39 -261 2145 132 3 3 chr11 61566006 61566316 -89217237 + AluSx SINE Alu 1 310 -2 1564 171 6 52 chr11 61566329 61566656 -89216897 + AluJb SINE Alu 1 312 0 700 159 0 9 chr11 61566687 61566794 -89216759 - FLAM_C SINE Alu -26 117 12 24 0 0 0 chr11 61567197 61567221 -89216332 + AT_rich Low_complexity Low_complexity 1 24 0 2039 98 58 0 chr11 61567517 61567794 -89215759 - AluSq SINE Alu -20 293 1 838 135 8 8 chr11 61568124 61568257 -89215296 + FLAM_C SINE Alu 1 133 0 2420 82 3 3 chr11 61568631 61568936 -89214617 + AluSg SINE Alu 2 306 -4 210 234 81 97 chr11 61569050 61569174 -89214379 + MIR SINE MIR 21 142 -120 1775 160 10 17 chr11 61569480 61569774 -89213779 + AluJb SINE Alu 1 292 -20 24 53 0 0 chr11 61570144 61570182 -89213371 + AT_rich Low_complexity Low_complexity 1 38 0 1990 153 13 0 chr11 61573225 61573533 -89210020 - AluSx SINE Alu 0 312 1 1620 194 7 11 chr11 61574211 61574494 -89209059 - AluJo SINE Alu -30 282 1 876 123 141 6 chr11 61574645 61574815 -89208738 - L1MA3 LINE L1 -120 6185 5993 2021 81 4 0 chr11 61575066 61575327 -89208226 - AluSp SINE Alu -3 310 49 2280 80 28 0 chr11 61575468 61575754 -89207799 - AluSx SINE Alu -18 294 1 966 143 0 0 chr11 61576428 61576561 -89206992 - FLAM_C SINE Alu -10 133 1 185 372 39 0 chr11 61576602 61576680 -89206873 + L2 LINE L2 3008 3088 -225 237 109 291 0 chr11 61576843 61576898 -89206655 + L2 LINE L2 3242 3312 -1 205 281 110 49 chr11 61577640 61577722 -89205831 + MIR SINE MIR 20 106 -102 243 291 23 12 chr11 61577745 61577831 -89205722 + MIR SINE MIR 6 92 -170 1224 253 76 101 chr11 61577849 61578522 -89205031 + MER21B LTR ERV1 58 713 -150 2271 119 0 3 chr11 61578771 61579082 -89204471 + AluSx SINE Alu 1 310 -2 254 289 0 31 chr11 61579241 61579338 -89204215 - MIR SINE MIR -1 261 168 331 333 31 7 chr11 61579383 61579677 -89203876 - AluSq SINE Alu 0 303 3 2066 157 0 3 chr11 61579683 61579988 -89203565 - AluJo SINE Alu -8 304 1 7573 174 41 63 chr11 61580022 61580678 -89202875 + L1MB2 LINE L1 3630 4299 -1872 7397 53 6 37 chr11 61580678 61581931 -89201622 + SVA Other Other 330 1386 0 7573 174 41 63 chr11 61581931 61582960 -89200593 + L1MB2 LINE L1 4299 5349 -822 2131 126 0 3 chr11 61582960 61583262 -89200291 + AluSx SINE Alu 1 301 -11 7573 174 41 63 chr11 61583262 61583993 -89199560 + L1MB2 LINE L1 5349 6003 -168 2254 110 0 3 chr11 61583993 61584294 -89199259 + AluSx SINE Alu 1 300 -12 7573 174 41 63 chr11 61584294 61584459 -89199094 + L1MB2 LINE L1 6003 6170 -1 2203 119 3 0 chr11 61584464 61584758 -89198795 + AluSp SINE Alu 1 295 -18 209 32 0 32 chr11 61584758 61584789 -89198764 + (TA)n Simple_repeat Simple_repeat 2 31 0 2046 90 0 0 chr11 61585395 61585650 -89197903 - AluSx SINE Alu -13 299 45 196 310 177 18 chr11 61586369 61586482 -89197071 + MIR3 SINE MIR 14 144 -64 10652 176 5 5 chr11 61586504 61589095 -89194458 + L1PB1 LINE L1 3201 5791 -360 559 54 77 19 chr11 61589095 61589356 -89194197 + (TA)n Simple_repeat Simple_repeat 1 276 0 2528 122 6 6 chr11 61589386 61589748 -89193805 + L1PB1 LINE L1 5787 6148 -3 5238 177 34 1 chr11 61589871 61590917 -89192636 - L1MA4 LINE L1 -5 6295 5215 2396 50 3 3 chr11 61590930 61591229 -89192324 - AluY SINE Alu -12 299 1 1332 213 42 25 chr11 61591229 61591390 -89192163 - AluJb SINE Alu -11 291 121 510 17 0 0 chr11 61591390 61591449 -89192104 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 1332 213 42 25 chr11 61591449 61591573 -89191980 - AluJb SINE Alu -181 121 1 958 193 33 25 chr11 61591577 61591821 -89191732 + L1ME1 LINE L1 3480 3725 -2421 1679 231 80 49 chr11 61591822 61592522 -89191031 + L1ME2 LINE L1 4449 5170 -976 2143 112 3 34 chr11 61592588 61592911 -89190642 + AluSq SINE Alu 1 313 0 2101 211 99 14 chr11 61592943 61593184 -89190369 + L1ME2 LINE L1 5159 5378 -786 1860 163 3 0 chr11 61593184 61593478 -89190075 + AluJb SINE Alu 1 295 -17 2101 211 99 14 chr11 61593478 61593961 -89189592 + L1ME2 LINE L1 5378 5941 -223 314 200 0 0 chr11 61594069 61594129 -89189424 - L1MC4 LINE L1 -1339 6703 6644 349 240 225 8 chr11 61594145 61594169 -89189384 + L2 LINE L2 2642 2660 -654 1749 120 9 0 chr11 61594169 61594402 -89189151 - AluSp SINE Alu -14 299 65 349 240 225 8 chr11 61594402 61594506 -89189047 + L2 LINE L2 2660 2798 -516 432 280 100 46 chr11 61594579 61594818 -89188735 + L2 LINE L2 3049 3300 -13 216 0 0 0 chr11 61595677 61595701 -89187852 + (TG)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr11 61597184 61597206 -89186347 + AT_rich Low_complexity Low_complexity 1 22 0 2418 67 3 16 chr11 61597493 61597808 -89185745 + AluY SINE Alu 1 311 0 352 366 87 41 chr11 61597986 61598399 -89185154 + L2 LINE L2 2840 3271 -1 21 0 0 0 chr11 61598586 61598607 -89184946 + AT_rich Low_complexity Low_complexity 1 21 0 223 268 110 12 chr11 61598748 61598830 -89184723 + MIR SINE MIR 48 137 -71 1215 163 5 5 chr11 61599104 61599307 -89184246 - AluJo SINE Alu -17 295 93 257 226 52 61 chr11 61599416 61599531 -89184022 - MIR3 SINE MIR -92 116 3 251 345 166 7 chr11 61601844 61601983 -89181570 + L2 LINE L2 3108 3268 -4 325 293 63 5 chr11 61602523 61602714 -89180839 + L1ME1 LINE L1 3869 4070 -2076 2023 144 13 3 chr11 61602903 61603201 -89180352 + AluSx SINE Alu 1 301 -11 273 149 43 0 chr11 61603567 61603614 -89179939 - LTR50 LTR ERVL -2 793 745 794 220 76 35 chr11 61603648 61603939 -89179614 + L1MEc LINE L1 1908 2216 -4180 2032 154 0 3 chr11 61603939 61604250 -89179303 + AluSx SINE Alu 1 310 -2 794 220 76 35 chr11 61604250 61604299 -89179254 + L1MEc LINE L1 2216 2262 -4134 528 225 0 0 chr11 61604295 61604406 -89179147 + L1MC3 LINE L1 6456 6566 -1219 * 725 162 0 0 chr11 61604408 61604507 -89179046 + AluJ/FLAM SINE Alu 2 100 -212 854 142 88 7 chr11 61604513 61604606 -89178947 + L1PB1 LINE L1 5989 6100 -51 2021 130 3 7 chr11 61604606 61604907 -89178646 + AluSx SINE Alu 3 302 -10 854 142 88 7 chr11 61604907 61604961 -89178592 + L1PB1 LINE L1 6100 6148 -3 1806 167 17 33 chr11 61604988 61605347 -89178206 + L1MA4 LINE L1 5939 6291 -9 1435 210 63 3 chr11 61605381 61605748 -89177805 - L1 LINE L1 -2585 3561 3173 1814 118 40 56 chr11 61605763 61606067 -89177486 + AluSx SINE Alu 1 299 -13 217 182 13 78 chr11 61606098 61606175 -89177378 + A-rich Low_complexity Low_complexity 5 76 0 1980 264 58 27 chr11 61606179 61606325 -89177228 + L1ME1 LINE L1 4499 4639 -1525 1593 140 17 55 chr11 61606325 61606617 -89176936 - AluJb SINE Alu -19 293 13 1980 264 58 27 chr11 61606617 61607554 -89175999 + L1ME1 LINE L1 4639 5607 -557 304 117 106 64 chr11 61607551 61607645 -89175908 + L1ME1 LINE L1 5819 5916 -250 * 1878 174 3 0 chr11 61607725 61608030 -89175523 - AluJb SINE Alu -6 306 1 220 302 31 10 chr11 61608086 61608182 -89175371 + L2 LINE L2 2751 2848 -466 355 255 103 59 chr11 61608218 61608422 -89175131 + L2 LINE L2 3045 3257 -56 1772 165 31 0 chr11 61608699 61608990 -89174563 - AluSx SINE Alu -12 300 1 2077 115 14 0 chr11 61610163 61610449 -89173104 + AluSx SINE Alu 1 290 -22 2002 112 14 0 chr11 61611405 61611702 -89171851 + AluSg SINE Alu 1 301 0 263 333 128 44 chr11 61611744 61611993 -89171560 + L2 LINE L2 2840 3109 -163 2375 43 30 23 chr11 61612253 61612555 -89170998 - AluY SINE Alu -7 304 1 22 0 0 0 chr11 61612564 61612586 -89170967 + AT_rich Low_complexity Low_complexity 1 22 0 418 211 0 0 chr11 61612954 61613025 -89170528 - tRNA-Val-GTG tRNA tRNA -3 73 3 406 222 0 0 chr11 61613311 61613383 -89170170 - tRNA-Val-GTG tRNA tRNA -2 74 3 583 23 0 149 chr11 61613619 61613706 -89169847 + tRNA-Arg-AGA tRNA tRNA 1 74 -2 342 154 64 64 chr11 61614082 61614160 -89169393 + tRNA-Leu-TTG tRNA tRNA 3 80 -6 302 235 0 29 chr11 61614417 61614485 -89169068 - L2 LINE L2 -1 3312 3247 2396 81 0 7 chr11 61614625 61614935 -89168618 + AluSx SINE Alu 1 308 -4 712 151 0 48 chr11 61614947 61615073 -89168480 + FLAM_C SINE Alu 6 125 -18 26 0 0 0 chr11 61615073 61615099 -89168454 + AT_rich Low_complexity Low_complexity 1 26 0 291 330 107 40 chr11 61615340 61615564 -89167989 - L2 LINE L2 0 3272 3034 1792 139 0 57 chr11 61615688 61616004 -89167549 - AluSx SINE Alu -14 298 1 2414 85 0 0 chr11 61616232 61616539 -89167014 + AluSg SINE Alu 3 309 -1 1961 77 0 0 chr11 61616920 61617156 -89166397 + AluSq SINE Alu 29 267 -46 962 88 25 6 chr11 61617156 61617316 -89166237 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 22 35 0 0 chr11 61617419 61617448 -89166105 + AT_rich Low_complexity Low_complexity 1 29 0 1916 95 12 58 chr11 61617497 61617823 -89165730 - AluY SINE Alu 0 311 1 681 14 0 0 chr11 61618749 61618822 -89164731 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 711 0 0 0 chr11 61619817 61619890 -89163663 - tRNA-Phe-TTC tRNA tRNA -3 73 1 2203 81 0 11 chr11 61619943 61620255 -89163298 + AluSq SINE Alu 3 311 0 403 73 18 0 chr11 61621121 61621176 -89162377 + U7 snRNA snRNA 2 57 -6 387 259 98 21 chr11 61621198 61621341 -89162212 - MIR SINE MIR 0 262 109 215 301 75 23 chr11 61621445 61621578 -89161975 - L3 LINE CR1 -1006 571 432 2003 86 0 11 chr11 61621705 61621974 -89161579 - AluSg SINE Alu -17 293 28 706 0 0 0 chr11 61622655 61622728 -89160825 - tRNA-Lys-AAA tRNA tRNA -3 73 1 2492 170 39 85 chr11 61623508 61623751 -89159802 - MER34B LTR ERV1 0 565 312 2579 51 3 6 chr11 61623751 61624063 -89159490 + AluSx SINE Alu 1 311 -1 2492 170 39 85 chr11 61624063 61624408 -89159145 - MER34B LTR ERV1 -253 312 4 1596 117 9 4 chr11 61624440 61624670 -89158883 + AluSx SINE Alu 9 239 -73 197 273 118 36 chr11 61624734 61624844 -89158709 - L2 LINE L2 -214 3058 2940 1716 168 27 114 chr11 61625074 61625265 -89158288 - MLT2C2 LTR ERVL -7 457 251 2102 112 3 0 chr11 61625265 61625586 -89157967 + AluSx SINE Alu 1 322 0 1716 168 27 114 chr11 61625586 61625638 -89157915 - MLT2C2 LTR ERVL -213 251 196 2320 101 7 0 chr11 61625638 61625944 -89157609 - AluSx SINE Alu -4 308 1 1716 168 27 114 chr11 61625944 61626103 -89157450 - MLT2C2 LTR ERVL -268 196 92 1711 167 10 10 chr11 61626103 61626403 -89157150 + AluJo SINE Alu 2 301 -11 1716 168 27 114 chr11 61626403 61626442 -89157111 - MLT2C2 LTR ERVL -372 92 51 2561 67 3 0 chr11 61626807 61627119 -89156434 - AluSp SINE Alu 0 313 1 651 142 63 0 chr11 61627491 61627618 -89155935 - MER53 DNA DNA -12 177 43 2167 86 62 0 chr11 61627619 61627911 -89155642 + AluSx SINE Alu 1 310 -2 912 113 8 8 chr11 61628052 61628185 -89155368 - AluSq/x SINE Alu -180 133 1 700 14 0 0 chr11 61628699 61628772 -89154781 - tRNA-Phe-TTC tRNA tRNA -3 73 1 261 273 45 40 chr11 61628976 61629174 -89154379 - L1MC/D LINE L1 -1915 5893 5695 2092 73 4 0 chr11 61629631 61629890 -89153663 + AluSp SINE Alu 37 296 -17 1846 223 98 31 chr11 61630353 61630811 -89152742 + MLT1E2 LTR MaLR 137 625 -1 2282 90 3 34 chr11 61630934 61631114 -89152439 - AluSq SINE Alu 0 313 129 492 18 0 0 chr11 61631114 61631171 -89152382 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 2212 96 0 0 chr11 61631171 61631451 -89152102 - AluSg SINE Alu -30 280 1 2282 90 3 34 chr11 61631451 61631590 -89151963 - AluSq SINE Alu -182 131 3 281 250 0 10 chr11 61631600 61631704 -89151849 + (CATA)n Simple_repeat Simple_repeat 2 104 0 244 213 0 21 chr11 61631710 61631757 -89151796 - MER5B DNA MER1_type -59 119 74 369 0 0 0 chr11 61631763 61631804 -89151749 + (TG)n Simple_repeat Simple_repeat 2 42 0 281 241 69 11 chr11 61631812 61631899 -89151654 + MER5B DNA MER1_type 68 159 -19 189 261 118 84 chr11 61631969 61632031 -89151522 + L2 LINE L2 2289 2347 -967 2018 137 0 7 chr11 61632031 61632324 -89151229 + AluJo SINE Alu 5 295 -17 189 261 118 84 chr11 61632324 61632380 -89151173 + L2 LINE L2 2347 2411 -903 903 295 13 13 chr11 61632526 61632828 -89150725 - AluSx SINE Alu 0 302 1 33 25 0 0 chr11 61632954 61632994 -89150559 + AT_rich Low_complexity Low_complexity 1 40 0 915 133 0 15 chr11 61633107 61633242 -89150311 - FLAM_C SINE Alu 0 133 1 2051 119 0 11 chr11 61633269 61633585 -89149968 + AluSx SINE Alu 1 313 0 2347 92 0 0 chr11 61633658 61633952 -89149601 + AluSg SINE Alu 3 296 -14 727 258 81 32 chr11 61634317 61634565 -89148988 + MIR SINE MIR 2 261 -1 303 341 34 0 chr11 61634900 61634988 -89148565 + L2 LINE L2 3203 3293 -20 22 0 0 0 chr11 61635101 61635123 -89148430 + AT_rich Low_complexity Low_complexity 1 22 0 1188 192 126 53 chr11 61635322 61635570 -89147983 + MER2 DNA MER2_type 4 281 -63 2462 76 7 0 chr11 61635570 61635874 -89147679 - AluSq SINE Alu -7 306 1 1188 192 126 53 chr11 61635874 61635943 -89147610 + MER2 DNA MER2_type 281 344 0 2063 147 0 16 chr11 61636737 61637051 -89146502 - AluSx SINE Alu -3 309 1 324 264 203 18 chr11 61637344 61637507 -89146046 - MIR3 SINE MIR -15 193 1 363 309 29 15 chr11 61638395 61638531 -89145022 + L2 LINE L2 3176 3313 0 344 262 12 0 chr11 61638942 61639026 -89144527 - L2 LINE L2 0 3313 3229 1702 179 0 14 chr11 61639611 61639953 -89143600 + AluJb SINE Alu 1 338 0 370 295 92 54 chr11 61640504 61640928 -89142625 - LTR33 LTR ERVL -69 454 16 2106 90 49 17 chr11 61641014 61641302 -89142251 - AluSx SINE Alu -14 298 2 1505 148 15 44 chr11 61641501 61641669 -89141884 - AluJb SINE Alu -18 294 135 1814 155 7 3 chr11 61641669 61641959 -89141594 - AluSx SINE Alu -21 291 1 1505 148 15 44 chr11 61641959 61642061 -89141492 - AluJb SINE Alu -177 135 32 232 342 90 18 chr11 61642151 61642262 -89141291 - L2 LINE L2 -17 3255 3137 1127 245 65 51 chr11 61642366 61642555 -89140998 + MLT1J LTR MaLR 24 209 -302 2097 125 0 0 chr11 61642555 61642843 -89140710 - AluSx SINE Alu -24 288 1 1127 245 65 51 chr11 61642843 61643079 -89140474 + MLT1J LTR MaLR 209 455 -56 1052 219 41 0 chr11 61643079 61643298 -89140255 - MER58B DNA MER1_type 0 341 114 236 264 0 0 chr11 61643458 61643511 -89140042 + L2 LINE L2 3215 3267 -5 297 278 224 39 chr11 61643700 61643981 -89139572 - L2 LINE L2 -350 2964 2632 218 337 74 42 chr11 61644113 61644208 -89139345 + L2 LINE L2 3126 3223 -49 1427 189 15 8 chr11 61646615 61646874 -89136679 - AluJb SINE Alu -51 261 1 195 345 12 12 chr11 61647162 61647246 -89136307 + L2 LINE L2 3230 3313 0 397 262 70 127 chr11 61647319 61647484 -89136069 + L2 LINE L2 2190 2363 -951 1613 160 0 4 chr11 61647484 61647734 -89135819 - AluJb SINE Alu -6 306 58 397 262 70 127 chr11 61647734 61647969 -89135584 + L2 LINE L2 2363 2567 -747 763 258 79 26 chr11 61647986 61648215 -89135338 + MIR SINE MIR 21 261 -1 1424 181 19 67 chr11 61648222 61648373 -89135180 + AluJo SINE Alu 1 131 -181 2148 131 3 0 chr11 61648373 61648663 -89134890 + AluSx SINE Alu 1 291 -21 1424 181 19 67 chr11 61648663 61648825 -89134728 + AluJo SINE Alu 131 299 -13 2256 114 0 3 chr11 61648825 61649123 -89134430 + AluSg SINE Alu 1 297 -13 1694 97 120 23 chr11 61649352 61649639 -89133914 - AluSx SINE Alu 0 312 1 446 246 66 39 chr11 61649690 61649875 -89133678 - MIR SINE MIR -31 231 42 314 297 99 0 chr11 61650100 61650211 -89133342 + L2 LINE L2 3143 3264 -8 2016 157 12 9 chr11 61650297 61650640 -89132913 + L1PA16 LINE L1 5807 6150 -16 211 257 64 99 chr11 61652004 61652072 -89131481 - MIR3 SINE MIR -11 197 128 285 51 0 0 chr11 61652072 61652111 -89131442 + (CATA)n Simple_repeat Simple_repeat 2 40 0 211 257 64 99 chr11 61652111 61652213 -89131340 - MIR3 SINE MIR -80 128 33 462 245 47 62 chr11 61652822 61653014 -89130539 + MER5A DNA MER1_type 1 189 0 1145 139 11 6 chr11 61654000 61654180 -89129373 - MER20 DNA MER1_type -35 184 4 2196 108 0 3 chr11 61654824 61655119 -89128434 + AluSq SINE Alu 20 313 0 472 186 20 20 chr11 61655138 61655240 -89128313 - L1ME1 LINE L1 -7 6159 6058 232 118 0 0 chr11 61655240 61655274 -89128279 - MER3 DNA MER1_type -160 49 16 353 262 153 38 chr11 61658182 61658365 -89125188 + MIR SINE MIR 49 252 -10 198 0 0 0 chr11 61659345 61659367 -89124186 + (A)n Simple_repeat Simple_repeat 1 22 0 1164 149 6 0 chr11 61659367 61659542 -89124011 + AluSg/x SINE Alu 121 296 -16 1829 131 65 0 chr11 61659717 61660007 -89123546 + AluSp SINE Alu 1 309 -4 716 78 0 0 chr11 61660011 61660101 -89123452 + L1P3 LINE L1 5398 5487 -685 449 115 11 0 chr11 61660304 61660391 -89123162 + (TA)n Simple_repeat Simple_repeat 1 88 0 247 172 124 90 chr11 61660394 61660424 -89123129 - L1ME1 LINE L1 -157 5964 5936 2058 136 0 0 chr11 61660424 61660710 -89122843 - AluSx SINE Alu -26 286 1 247 172 124 90 chr11 61660710 61660824 -89122729 - L1ME1 LINE L1 -185 5936 5815 399 267 67 0 chr11 61660837 61660987 -89122566 - L1ME4a LINE L1 0 6121 5962 824 163 105 12 chr11 61661083 61661304 -89122249 - AluJo SINE Alu -24 288 2 483 269 234 11 chr11 61661333 61661410 -89122143 - L1ME4a LINE L1 -335 5786 5727 1544 164 82 4 chr11 61661410 61661690 -89121863 + AluJo SINE Alu 1 302 -10 483 269 234 11 chr11 61661690 61661980 -89121573 - L1ME4a LINE L1 -394 5727 5337 795 132 16 25 chr11 61662277 61662398 -89121155 + AluJb SINE Alu 3 122 -190 2246 104 3 16 chr11 61662398 61662705 -89120848 - AluSq SINE Alu -10 303 1 490 289 52 0 chr11 61662712 61662847 -89120706 + MIR3 SINE MIR 50 191 -17 1603 154 21 18 chr11 61663163 61663449 -89120104 + AluJo SINE Alu 11 297 -15 1737 158 27 27 chr11 61663455 61663747 -89119806 + AluJb SINE Alu 1 292 -20 195 100 0 0 chr11 61665487 61665517 -89118036 + (TG)n Simple_repeat Simple_repeat 2 31 0 2061 148 0 7 chr11 61666250 61666555 -89116998 - AluSx SINE Alu -9 303 1 2164 124 3 0 chr11 61667632 61667931 -89115622 + AluSq SINE Alu 1 300 -13 2423 70 0 3 chr11 61668010 61668308 -89115245 + AluY SINE Alu 1 297 -14 1542 158 56 42 chr11 61668327 61668462 -89115091 + AluJo SINE Alu 5 137 -175 1952 143 3 0 chr11 61668462 61668755 -89114798 + AluSx SINE Alu 1 294 -18 1542 158 56 42 chr11 61668755 61668904 -89114649 + AluJo SINE Alu 137 293 -19 1915 154 3 0 chr11 61669043 61669336 -89114217 + AluJb SINE Alu 1 294 -18 577 277 33 5 chr11 61669571 61669760 -89113793 - MIR SINE MIR -15 247 54 1020 239 116 64 chr11 61669863 61670345 -89113208 + MLT1J LTR MaLR 1 507 -4 1035 208 87 22 chr11 61671044 61671275 -89112278 + AluJo SINE Alu 44 289 -23 627 247 114 95 chr11 61671682 61672269 -89111284 - L1MC5 LINE L1 -53 7908 7311 735 207 0 0 chr11 61672346 61672462 -89111091 + FLAM_C SINE Alu 1 116 -27 34 0 0 0 chr11 61672463 61672497 -89111056 + AT_rich Low_complexity Low_complexity 1 34 0 3216 23 0 0 chr11 61672612 61672956 -89110597 - SVA Other Other -259 1127 784 1427 220 88 61 chr11 61672958 61673492 -89110061 - L1MC4 LINE L1 -733 7228 6705 295 228 24 134 chr11 61673551 61673678 -89109875 + L2 LINE L2 3182 3294 -19 941 181 0 69 chr11 61673870 61674058 -89109495 - AluJb SINE Alu -137 175 1 1865 167 0 10 chr11 61674510 61674815 -89108738 + AluJb SINE Alu 1 302 -10 677 105 91 35 chr11 61676197 61676340 -89107213 - L1MA5 LINE L1 0 6300 6150 361 133 17 0 chr11 61676692 61676752 -89106801 + U3 snRNA snRNA 8 68 -149 450 329 66 0 chr11 61676809 61676961 -89106592 + MIR SINE MIR 33 194 -68 460 255 91 139 chr11 61677021 61677669 -89105884 + L1MC4 LINE L1 7286 7902 -140 1011 138 28 97 chr11 61677676 61677893 -89105660 + AluJb SINE Alu 81 282 -30 360 0 0 0 chr11 61677900 61677940 -89105613 + (CA)n Simple_repeat Simple_repeat 1 40 0 210 244 0 0 chr11 61677972 61678017 -89105536 + (CCTA)n Simple_repeat Simple_repeat 2 46 0 268 228 32 34 chr11 61678017 61678130 -89105423 + L1MC5 LINE L1 7836 8036 -6 1657 116 136 8 chr11 61678254 61678504 -89105049 - AluSg SINE Alu -18 292 11 249 402 26 39 chr11 61678766 61679000 -89104553 + L2 LINE L2 3029 3259 -13 * 293 306 36 45 chr11 61678975 61679086 -89104467 - L2 LINE L2 0 3313 3204 2324 52 0 21 chr11 61679187 61679510 -89104043 - AluY SINE Alu 0 317 1 189 340 46 46 chr11 61679645 61679798 -89103755 - L2 LINE L2 -441 2873 2721 192 89 0 71 chr11 61679803 61679859 -89103694 + (TTTC)n Simple_repeat Simple_repeat 4 55 0 1455 188 79 14 chr11 61679862 61680154 -89103399 - AluJo SINE Alu -1 311 1 330 294 102 64 chr11 61680164 61680239 -89103314 - L2 LINE L2 -610 2704 2633 2094 106 34 7 chr11 61680239 61680532 -89103021 - AluSx SINE Alu -11 301 1 330 294 102 64 chr11 61680532 61680643 -89102910 - L2 LINE L2 -681 2633 2511 1021 311 0 0 chr11 61680899 61681201 -89102352 - AluSx SINE Alu 0 302 1 323 253 260 20 chr11 61681402 61681548 -89102005 - MER5A DNA MER1_type -5 184 4 1937 122 7 4 chr11 61682211 61682490 -89101063 - AluSq SINE Alu -4 309 30 612 237 174 4 chr11 61682548 61682818 -89100735 - L1ME4a LINE L1 -53 6068 5753 280 200 169 0 chr11 61683223 61683288 -89100265 + L2 LINE L2 3197 3272 0 2277 106 3 0 chr11 61683878 61684181 -89099372 + AluSp SINE Alu 6 309 -4 620 239 54 36 chr11 61684182 61684349 -89099204 - MIR SINE MIR -88 174 5 225 272 109 48 chr11 61684459 61684602 -89098951 - MIR SINE MIR -87 121 7 864 115 24 97 chr11 61685107 61685272 -89098281 - L1PA13 LINE L1 0 6163 6011 2238 127 0 0 chr11 61685816 61686124 -89097429 + AluSx SINE Alu 1 308 -4 445 299 24 6 chr11 61686513 61686677 -89096876 + MLT1J LTR MaLR 339 505 -6 1701 100 0 56 chr11 61686707 61686957 -89096596 + MER46A DNA MER2_type 1 236 0 1981 129 0 34 chr11 61686988 61687184 -89096369 - AluSx SINE Alu 0 312 140 2389 84 0 0 chr11 61687184 61687483 -89096070 - AluSx SINE Alu -13 299 1 1228 177 0 5 chr11 61687483 61687615 -89095938 - AluSx SINE Alu -177 135 5 1981 129 0 34 chr11 61687483 61687615 -89095938 - AluSx SINE Alu -172 140 5 274 163 0 0 chr11 61687733 61687782 -89095771 + Alu SINE Alu 1 49 -254 1636 148 61 4 chr11 61687909 61688187 -89095366 - AluJb SINE Alu -17 295 2 227 237 92 0 chr11 61688276 61688349 -89095204 + MIR3 SINE MIR 78 158 -50 382 272 212 11 chr11 61688554 61688738 -89094815 - MIR SINE MIR 0 262 42 2425 133 65 59 chr11 61688765 61688812 -89094741 + L1MC1 LINE L1 5842 5887 -446 225 0 0 0 chr11 61688812 61688837 -89094716 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2215 87 0 4 chr11 61688839 61689116 -89094437 - AluSc SINE Alu -31 278 3 2425 133 65 59 chr11 61689116 61689153 -89094400 + L1MC1 LINE L1 5887 5922 -411 2197 148 24 6 chr11 61689153 61689491 -89094062 - MER2 DNA MER2_type 0 344 1 2425 133 65 59 chr11 61689491 61689891 -89093662 + L1MC1 LINE L1 5922 6333 0 2024 149 0 0 chr11 61690123 61690424 -89093129 + AluSx SINE Alu 1 301 -11 583 332 4 12 chr11 61690661 61690908 -89092645 + AluJb SINE Alu 44 288 -24 2332 84 16 7 chr11 61691109 61691418 -89092135 - AluSx SINE Alu 0 312 1 2287 118 0 3 chr11 61691494 61691807 -89091746 + AluSx SINE Alu 1 312 0 531 297 230 26 chr11 61691992 61692472 -89091081 - L2 LINE L2 -66 3247 2654 4190 136 36 105 chr11 61692556 61693512 -89090041 + L1PA12 LINE L1 5279 6168 0 772 109 8 17 chr11 61693679 61693798 -89089755 + MLT1B LTR MaLR 1 118 -272 550 268 34 56 chr11 61693937 61694116 -89089437 + MLT1J LTR MaLR 170 344 -167 1171 215 88 0 chr11 61694125 61694399 -89089154 + AluJb SINE Alu 1 298 -4 22 0 0 0 chr11 61694401 61694423 -89089130 + AT_rich Low_complexity Low_complexity 1 22 0 358 318 36 9 chr11 61695105 61695215 -89088338 + MIR3 SINE MIR 58 170 -38 204 304 0 0 chr11 61695706 61695762 -89087791 + L2 LINE L2 3254 3309 -4 1706 98 163 0 chr11 61697088 61697356 -89086197 - AluSg SINE Alu 0 308 1 1879 127 55 0 chr11 61697568 61697843 -89085710 - AluSx SINE Alu -22 290 1 1345 170 40 25 chr11 61698499 61698775 -89084778 + AluJo SINE Alu 9 288 -24 681 201 84 13 chr11 61699709 61699863 -89083690 - MIR SINE MIR 0 262 98 25 0 0 0 chr11 61700480 61700505 -89083048 + AT_rich Low_complexity Low_complexity 1 25 0 338 276 40 76 chr11 61701367 61701592 -89081961 + L1MC4a LINE L1 5671 5887 -1921 1846 158 10 3 chr11 61701973 61702271 -89081282 + AluJb SINE Alu 1 300 -12 1359 241 137 29 chr11 61702547 61703142 -89080411 + L2 LINE L2 2650 3313 0 2207 89 3 30 chr11 61703519 61703821 -89079732 + AluSx SINE Alu 1 294 -18 2259 103 0 17 chr11 61704736 61705037 -89078516 + AluSx SINE Alu 1 296 -16 480 234 173 30 chr11 61705048 61705173 -89078380 + L1ME1 LINE L1 5939 6045 -121 1742 175 3 3 chr11 61705173 61705464 -89078089 - AluJo SINE Alu -8 304 14 480 234 173 30 chr11 61705464 61705535 -89078018 + L1ME1 LINE L1 6045 6163 -3 186 43 0 0 chr11 61707283 61707306 -89076247 + (T)n Simple_repeat Simple_repeat 1 23 0 2316 158 25 49 chr11 61708177 61708626 -89074927 - MLT2C2 LTR ERVL -6 458 21 2179 103 0 32 chr11 61708850 61709160 -89074393 - AluSx SINE Alu -8 304 5 540 266 106 25 chr11 61709935 61710134 -89073419 + MIR SINE MIR 29 243 -19 447 381 3 3 chr11 61711266 61711573 -89071980 - AluSx SINE Alu -4 308 2 712 218 135 0 chr11 61711796 61711952 -89071601 - FRAM SINE Alu -1 175 1 1184 241 18 100 chr11 61712032 61712534 -89071019 + LTR37B LTR ERV1 7 467 -1 4357 105 37 15 chr11 61712621 61713289 -89070264 - Tigger1 DNA MER2_type -121 2297 1615 3197 133 71 34 chr11 61713333 61714009 -89069544 + MER21A LTR ERV1 121 925 -6 297 180 98 0 chr11 61713997 61714058 -89069495 - Tigger1 DNA MER2_type -775 1643 1577 * 1054 147 0 0 chr11 61714079 61714235 -89069318 - AluSc SINE Alu -61 248 93 360 80 60 0 chr11 61714248 61714298 -89069255 - Tigger1 DNA MER2_type -828 1590 1538 1718 84 50 0 chr11 61714340 61714579 -89068974 - Tigger1 DNA MER2_type -868 1550 1300 189 0 0 0 chr11 61714684 61714705 -89068848 + (A)n Simple_repeat Simple_repeat 1 21 0 390 351 13 7 chr11 61714885 61715036 -89068517 + MIR SINE MIR 2 153 -109 816 126 0 17 chr11 61715047 61715166 -89068387 + FRAM SINE Alu 52 168 -8 2236 109 0 0 chr11 61715256 61715560 -89067993 + AluSg SINE Alu 1 304 -6 445 282 34 20 chr11 61716266 61716415 -89067138 + MIR SINE MIR 51 201 -61 451 324 56 32 chr11 61716580 61716798 -89066755 + MIR SINE MIR 6 228 -34 372 318 131 5 chr11 61716877 61717075 -89066478 + MIR SINE MIR 13 235 -27 347 292 58 86 chr11 61717694 61717934 -89065619 - L2 LINE L2 -1 3271 3039 225 289 176 56 chr11 61717934 61718076 -89065477 - MER5B DNA MER1_type -3 175 17 193 328 112 9 chr11 61718092 61718208 -89065345 - L2 LINE L2 -555 2759 2632 1430 261 86 16 chr11 61718440 61718917 -89064636 - MLT1G LTR MaLR 0 582 51 358 187 143 147 chr11 61719014 61719287 -89064266 - MLT1L LTR MaLR -322 293 22 539 241 45 0 chr11 61719335 61719468 -89064085 - MER103 DNA DNA -2 164 26 2256 114 3 9 chr11 61719528 61719843 -89063710 - AluSq SINE Alu 0 313 1 1646 195 36 28 chr11 61719865 61720224 -89063329 - MLT1A1 LTR MaLR 0 365 4 1078 277 99 40 chr11 61720749 61720869 -89062684 + LTR33A LTR ERVL 1 113 -410 1741 170 98 12 chr11 61720869 61721205 -89062348 + MLT1A1 LTR MaLR 1 365 0 1078 277 99 40 chr11 61721205 61721578 -89061975 + LTR33A LTR ERVL 113 523 0 192 40 0 0 chr11 61721782 61721807 -89061746 + (T)n Simple_repeat Simple_repeat 1 25 0 329 270 34 11 chr11 61723025 61723114 -89060439 + MIR SINE MIR 164 254 -8 519 328 69 15 chr11 61723141 61723345 -89060208 - MIR SINE MIR -8 254 40 2416 70 0 6 chr11 61723416 61723728 -89059825 + AluY SINE Alu 1 310 -1 1157 228 23 0 chr11 61723779 61723998 -89059555 + MER58A DNA MER1_type 1 224 0 2231 57 0 40 chr11 61724103 61724439 -89059114 + AluY SINE Alu 3 311 0 577 163 0 0 chr11 61724494 61724586 -89058967 + AluJo SINE Alu 51 142 -170 273 104 15 134 chr11 61724618 61724685 -89058868 + AluSc SINE Alu 136 194 -105 302 269 65 0 chr11 61724712 61724805 -89058748 + L1M4 LINE L1 3095 3193 -2953 2226 87 0 7 chr11 61724882 61725168 -89058385 + AluSc SINE Alu 4 287 -22 844 191 71 24 chr11 61725459 61725627 -89057926 - AluJb SINE Alu 0 312 137 951 227 5 5 chr11 61725724 61725909 -89057644 - MER5A DNA MER1_type 0 189 5 960 237 60 103 chr11 61726099 61726164 -89057389 + MLT1H1 LTR MaLR 1 67 -488 1440 196 66 11 chr11 61726164 61726450 -89057103 - AluJo SINE Alu -10 302 1 960 237 60 103 chr11 61726450 61726840 -89056713 + MLT1H1 LTR MaLR 67 469 -86 1759 167 7 0 chr11 61726942 61727235 -89056318 - AluSx SINE Alu -17 295 1 239 324 36 9 chr11 61727470 61727581 -89055972 + L1M3c LINE L1 1 114 -6027 4278 147 18 16 chr11 61727629 61728195 -89055358 + MER50 LTR ERV1 1 571 -163 1765 150 0 16 chr11 61728195 61728502 -89055051 - AluSq SINE Alu -11 302 1 4278 147 18 16 chr11 61728502 61728644 -89054909 + MER50 LTR ERV1 571 711 -23 390 42 0 0 chr11 61728883 61728931 -89054622 + (TG)n Simple_repeat Simple_repeat 2 49 0 326 294 25 0 chr11 61729176 61729295 -89054258 - L1ME LINE L1 -352 5769 5648 408 189 9 18 chr11 61729442 61729553 -89054000 + CT-rich Low_complexity Low_complexity 3 112 0 314 332 83 52 chr11 61729845 61730194 -89053359 - L1ME LINE L1 -1067 5079 4720 12115 143 37 22 chr11 61730216 61733418 -89050135 - L1MA6 LINE L1 0 6300 3054 1133 200 41 25 chr11 61733417 61733439 -89050114 - L1M4c LINE L1 -3916 2818 2798 * 450 0 0 0 chr11 61733439 61733489 -89050064 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 1133 200 41 25 chr11 61733489 61733823 -89049730 - L1M4c LINE L1 -3936 2798 2467 1037 172 6 0 chr11 61733875 61734038 -89049515 - AluJb SINE Alu -26 286 123 4211 235 87 17 chr11 61734038 61734792 -89048761 - L1M4c LINE L1 -4065 1667 1473 5047 151 32 38 chr11 61734792 61735763 -89047790 - LTR5 LTR ERVK 0 969 5 4211 235 87 17 chr11 61735763 61736334 -89047219 - L1M4c LINE L1 -4259 1473 943 1042 326 7 35 chr11 61736643 61737078 -89046475 - L1M4c LINE L1 -5532 1121 699 3022 195 19 16 chr11 61737151 61737666 -89045887 + MLT1F1 LTR MaLR 1 520 -47 2241 136 29 32 chr11 61737666 61738042 -89045511 - THE1C LTR MaLR 0 375 1 3022 195 19 16 chr11 61738042 61738089 -89045464 + MLT1F1 LTR MaLR 520 565 -2 1675 215 78 37 chr11 61738295 61738704 -89044849 + MLT1D LTR MaLR 6 431 -74 8402 112 42 7 chr11 61738732 61739969 -89043584 + Tigger1 DNA MER2_type 22 1301 -1117 3079 207 30 0 chr11 61740087 61740822 -89042731 - L1M4c LINE L1 -4516 2137 1321 1205 264 37 59 chr11 61740840 61741155 -89042398 - L1M4c LINE L1 -5442 1211 890 1519 129 0 26 chr11 61741155 61741387 -89042166 + AluJb SINE Alu 87 312 0 1205 264 37 59 chr11 61741387 61741525 -89042028 - L1M4c LINE L1 -5763 890 514 1002 165 125 20 chr11 61741525 61741725 -89041828 + AluJb SINE Alu 87 307 -5 657 288 68 19 chr11 61741726 61741931 -89041622 - L1M4c LINE L1 -6055 598 384 659 163 0 0 chr11 61741933 61742025 -89041528 + AluJ/FLAM SINE Alu 2 93 -219 1486 165 4 8 chr11 61742721 61742970 -89040583 + AluJo SINE Alu 1 248 -64 1461 130 9 5 chr11 61742972 61743188 -89040365 - AluSq SINE Alu -96 217 1 730 193 0 9 chr11 61743678 61743836 -89039717 - FLAM_C SINE Alu 0 165 9 631 160 9 9 chr11 61744049 61744155 -89039398 + FLAM_C SINE Alu 30 135 -8 795 265 46 23 chr11 61745931 61746150 -89037403 + MIR SINE MIR 7 230 -32 1944 160 0 7 chr11 61746516 61746816 -89036737 + AluSx SINE Alu 1 298 -14 939 121 0 0 chr11 61746874 61747006 -89036547 + AluSg/x SINE Alu 164 295 -17 219 275 48 66 chr11 61747521 61747688 -89035865 + MER5A DNA MER1_type 21 184 -5 283 315 122 57 chr11 61747864 61748267 -89035286 - L2 LINE L2 -3 3269 2841 1397 106 11 0 chr11 61748436 61748624 -89034929 - MER30B DNA MER1_type 0 190 1 304 282 30 15 chr11 61749577 61749708 -89033845 + GA-rich Low_complexity Low_complexity 4 136 0 1903 127 0 46 chr11 61749714 61750021 -89033532 + AluY SINE Alu 1 293 -18 470 296 28 14 chr11 61750340 61750486 -89033067 + MIR SINE MIR 36 182 -58 2464 116 30 25 chr11 61751496 61751858 -89031695 - THE1B LTR MaLR 0 364 1 1277 262 40 19 chr11 61752148 61752571 -89030982 + L1M4c LINE L1 1398 1933 -4449 1759 220 26 80 chr11 61752662 61753288 -89030265 + L1M4c LINE L1 2914 3505 -2877 490 171 19 48 chr11 61753364 61753469 -89030084 + MER21B LTR ERV1 214 315 -548 2155 128 10 0 chr11 61753471 61753776 -89029777 + AluSg SINE Alu 1 308 -2 367 305 26 39 chr11 61754281 61754435 -89029118 + MIR SINE MIR 37 188 -74 4810 158 32 27 chr11 61755057 61756348 -89027205 - L1MB1 LINE L1 -2 6402 5095 1895 157 0 10 chr11 61756348 61756661 -89026892 + AluJb SINE Alu 1 310 -2 4810 158 32 27 chr11 61756661 61756721 -89026832 - L1MB1 LINE L1 -1309 5095 5037 * 6801 209 22 40 chr11 61756709 61758162 -89025391 - L1MB1 LINE L1 -2129 4253 2837 11080 28 4 108 chr11 61758162 61759710 -89023843 + SVA Other Other 1 1386 0 6801 209 22 40 chr11 61759710 61760052 -89023501 - L1MB1 LINE L1 -3545 2837 2490 718 81 211 16 chr11 61760062 61760185 -89023368 - MSTA LTR MaLR -51 377 231 232 235 0 0 chr11 61760186 61760237 -89023316 - L1MB1 LINE L1 -3886 2498 2448 1736 129 86 0 chr11 61760238 61760519 -89023034 - AluSg SINE Alu 0 304 2 980 89 7 30 chr11 61760523 61760658 -89022895 - AluSq/x SINE Alu -180 132 1 2287 95 0 7 chr11 61760668 61760963 -89022590 - AluSx SINE Alu -19 293 1 5522 93 10 0 chr11 61761097 61761808 -89021745 - L1PA10 LINE L1 0 6168 5451 2207 111 0 37 chr11 61761864 61762188 -89021365 + AluSx SINE Alu 1 312 0 2008 123 18 0 chr11 61762533 61762658 -89020895 + AluSx SINE Alu 2 123 -209 201 39 0 0 chr11 61762658 61762684 -89020869 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 2008 123 18 0 chr11 61762684 61762884 -89020669 + AluSx SINE Alu 123 332 0 3659 157 30 53 chr11 61762889 61763656 -89019897 + L1MC3 LINE L1 6946 7694 -91 334 209 105 19 chr11 61763731 61763836 -89019717 + L2 LINE L2 3118 3231 -82 208 283 22 76 chr11 61763889 61763981 -89019572 + L2 LINE L2 3227 3313 0 276 30 0 0 chr11 61764112 61764159 -89019394 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 276 30 0 0 chr11 61764159 61764192 -89019361 + (TTCC)n Simple_repeat Simple_repeat 3 35 0 2307 96 3 3 chr11 61764702 61765003 -89018550 - AluSg SINE Alu -9 301 1 1371 133 62 5 chr11 61765031 61765242 -89018311 - AluJb SINE Alu -15 297 75 1017 114 0 182 chr11 61765294 61765530 -89018023 - 7SK RNA RNA 0 193 1 523 161 68 59 chr11 61765710 61765828 -89017725 - MLT1B LTR MaLR -271 119 1 220 338 0 0 chr11 61765830 61765901 -89017652 + MIR3 SINE MIR 118 188 -20 485 100 29 0 chr11 61765909 61765979 -89017574 - LTR3 LTR ERVK -1 431 360 3097 113 5 2 chr11 61766057 61766483 -89017070 + LTR3 LTR ERVK 5 431 -1 2006 169 40 19 chr11 61766564 61766936 -89016617 + MLT1B LTR MaLR 1 380 -10 1369 186 31 105 chr11 61767106 61767414 -89016139 - MLT1A1 LTR MaLR -2 363 87 1807 161 0 24 chr11 61767414 61767729 -89015824 - AluSx SINE Alu 0 308 1 1369 186 31 105 chr11 61767729 61767811 -89015742 - MLT1A1 LTR MaLR -278 87 1 1361 184 62 59 chr11 61768189 61768332 -89015221 + AluJb SINE Alu 1 142 -170 2286 106 0 0 chr11 61768332 61768625 -89014928 + AluSg SINE Alu 1 293 -17 1361 184 62 59 chr11 61768625 61768769 -89014784 + AluJb SINE Alu 142 289 -23 301 398 90 4 chr11 61769401 61769657 -89013896 + L3 LINE CR1 233 510 -1067 566 262 235 29 chr11 61769660 61770111 -89013442 - MLT1H LTR MaLR -5 544 1 945 109 39 0 chr11 61770153 61770281 -89013272 - L1PA16 LINE L1 -8 6158 6026 646 310 125 76 chr11 61770290 61770719 -89012834 + L3 LINE CR1 575 982 -595 2314 120 0 0 chr11 61770719 61771028 -89012525 + AluSx SINE Alu 3 311 -1 646 310 125 76 chr11 61771028 61771488 -89012065 + L3 LINE CR1 982 1507 -70 2150 112 14 0 chr11 61771671 61771966 -89011587 - AluSp SINE Alu -3 310 12 371 261 34 0 chr11 61771975 61772063 -89011490 - MER94 DNA DNA -43 91 1 269 295 98 27 chr11 61773212 61773239 -89010314 + L2 LINE L2 3153 3177 -95 2189 109 0 0 chr11 61773239 61773550 -89010003 - AluSx SINE Alu 0 311 1 269 295 98 27 chr11 61773550 61773633 -89009920 + L2 LINE L2 3177 3272 0 518 345 22 9 chr11 61774508 61774737 -89008816 - MIR SINE MIR -27 235 4 2277 105 16 0 chr11 61775570 61775935 -89007618 - AluSx SINE Alu 0 370 1 365 302 99 44 chr11 61777447 61777650 -89005903 + MIR SINE MIR 36 248 -14 296 0 0 49 chr11 61777906 61777947 -89005606 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 1927 167 0 3 chr11 61778284 61778590 -89004963 - AluJo SINE Alu -7 305 1 395 264 101 31 chr11 61779158 61779317 -89004236 - MIR SINE MIR -92 170 1 1623 177 46 3 chr11 61779714 61779996 -89003557 + AluJo SINE Alu 1 294 -18 2020 117 14 7 chr11 61780001 61780308 -89003245 + AluSx SINE Alu 1 309 0 2241 112 3 0 chr11 61780877 61781180 -89002373 - AluSg SINE Alu -6 304 1 695 125 0 0 chr11 61781925 61782029 -89001524 - L1MA5A LINE L1 0 6297 6194 543 332 128 17 chr11 61782033 61782331 -89001222 + L2 LINE L2 2036 2366 -948 22 0 0 0 chr11 61782387 61782409 -89001144 + AT_rich Low_complexity Low_complexity 1 22 0 1989 128 14 10 chr11 61782445 61782742 -89000811 + AluSx SINE Alu 1 298 -14 228 250 0 0 chr11 61782834 61782878 -89000675 - L3 LINE CR1 -7 1570 1527 5849 99 7 60 chr11 61783127 61783484 -89000069 + L1PB2 LINE L1 5147 5521 -630 1430 164 82 21 chr11 61783484 61783764 -88999789 + AluJb SINE Alu 5 301 -11 5849 99 7 60 chr11 61783764 61784460 -88999093 + L1PB2 LINE L1 5521 6150 -1 551 276 26 16 chr11 61784497 61784689 -88998864 + MIR SINE MIR 20 213 -49 2079 97 0 67 chr11 61784960 61785290 -88998263 + AluSq SINE Alu 6 313 0 1532 114 14 14 chr11 61785723 61785942 -88997611 + AluSx SINE Alu 10 228 -84 240 26 0 26 chr11 61785942 61785981 -88997572 + AluSx SINE Alu 264 301 -1 2368 71 3 7 chr11 61786218 61786513 -88997040 + AluY SINE Alu 1 294 -17 205 184 82 20 chr11 61786738 61786787 -88996766 + MIR SINE MIR 92 143 -119 1938 105 0 120 chr11 61786861 61787194 -88996359 - AluSx SINE Alu -19 293 1 345 310 86 23 chr11 61787334 61787508 -88996045 - MIR SINE MIR -11 251 67 1832 109 63 13 chr11 61788711 61789014 -88994539 - Ricksha DNA DNA -9 2845 2528 7054 134 15 24 chr11 61789014 61789448 -88994105 - Ricksha DNA DNA -384 2862 2426 2080 115 3 0 chr11 61789448 61789736 -88993817 + AluSg SINE Alu 22 310 0 7054 134 15 24 chr11 61789736 61790447 -88993106 - Ricksha DNA DNA -820 2426 1727 2971 169 24 44 chr11 61790427 61790604 -88992949 - Ricksha DNA DNA -1312 734 555 * 264 30 0 0 chr11 61790604 61790637 -88992916 + (TG)n Simple_repeat Simple_repeat 2 34 0 1725 167 0 27 chr11 61790637 61790930 -88992623 - AluJb SINE Alu -27 285 1 2971 169 24 44 chr11 61790930 61791365 -88992188 - Ricksha DNA DNA -1489 557 133 4529 101 2 16 chr11 61791467 61791813 -88991740 - MER41B LTR ERV1 0 635 301 5027 80 6 8 chr11 61791813 61792245 -88991308 + PABL_A LTR ERV1 1 433 -227 2185 110 3 0 chr11 61792245 61792535 -88991018 + AluSp SINE Alu 1 291 -22 5027 80 6 8 chr11 61792535 61792763 -88990790 + PABL_A LTR ERV1 433 660 0 4529 101 2 16 chr11 61792763 61793060 -88990493 - MER41B LTR ERV1 -334 301 1 2510 67 0 3 chr11 61793145 61793442 -88990111 + AluY SINE Alu 1 296 -15 189 107 0 0 chr11 61793442 61793470 -88990083 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 195 206 0 0 chr11 61793780 61793814 -88989739 + L2 LINE L2 3215 3248 -24 193 184 10 163 chr11 61793849 61793947 -88989606 + MIR SINE MIR 124 206 -56 2269 112 0 10 chr11 61794297 61794600 -88988953 - AluSx SINE Alu -12 300 1 823 197 0 0 chr11 61794787 61794939 -88988614 - FRAM SINE Alu -4 172 21 797 193 127 14 chr11 61795469 61795682 -88987871 - MIR SINE MIR -14 248 12 6419 87 0 0 chr11 61796030 61797006 -88986547 - L1PB1 LINE L1 -2 6149 5175 363 191 0 0 chr11 61797006 61797069 -88986484 - AluS SINE Alu -10 290 228 746 129 0 0 chr11 61797069 61797170 -88986383 - AluS SINE Alu -211 102 2 13226 197 18 13 chr11 61797170 61799119 -88984434 - L1 LINE L1 -952 5194 3225 1885 163 0 10 chr11 61799119 61799419 -88984134 - AluSx SINE Alu -15 297 1 13226 197 18 13 chr11 61799419 61800325 -88983228 - L1 LINE L1 -2921 3225 2325 1217 88 0 0 chr11 61800325 61800472 -88983081 + AluSq/x SINE Alu 1 147 -165 441 102 0 0 chr11 61800475 61800534 -88983019 - AluJ/FLAM SINE Alu -252 60 2 319 343 10 0 chr11 61800659 61800761 -88982792 + MIR SINE MIR 38 140 -68 1613 176 4 8 chr11 61802089 61802356 -88981197 - AluJo SINE Alu -17 295 30 684 193 0 9 chr11 61802569 61802727 -88980826 + FLAM_C SINE Alu 9 165 0 2250 107 3 0 chr11 61803217 61803516 -88980037 + AluSx SINE Alu 1 300 -12 201 284 14 14 chr11 61803555 61803629 -88979924 + GA-rich Low_complexity Low_complexity 1 74 0 2392 119 26 5 chr11 61803683 61804070 -88979483 + L1MA4 LINE L1 5890 6284 -16 2193 78 7 20 chr11 61804163 61804499 -88979054 + AluSx SINE Alu 1 332 0 252 0 0 0 chr11 61804810 61804838 -88978715 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 390 21 0 0 chr11 61804837 61804884 -88978669 + (CA)n Simple_repeat Simple_repeat 1 47 0 1722 165 0 58 chr11 61805157 61805485 -88978068 - AluJo SINE Alu -3 309 1 2363 85 0 0 chr11 61806045 61806328 -88977225 + AluSx SINE Alu 3 285 -27 457 256 26 0 chr11 61806967 61807084 -88976469 + L1M3b LINE L1 1 120 -6161 286 203 14 54 chr11 61807136 61807210 -88976343 + L1M3b LINE L1 267 337 -5944 287 335 120 6 chr11 61807271 61807429 -88976124 - MIR SINE MIR -78 184 9 892 152 7 7 chr11 61807493 61807644 -88975909 + L1M3 LINE L1 5670 5820 -360 243 0 0 0 chr11 61807650 61807677 -88975876 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2091 118 4 0 chr11 61807682 61807962 -88975591 - AluSx SINE Alu -31 281 1 192 344 32 0 chr11 61808823 61808916 -88974637 + MIR3 SINE MIR 67 157 -51 2184 102 27 0 chr11 61808998 61809291 -88974262 + AluSq SINE Alu 1 301 -12 2381 97 3 3 chr11 61809572 61809881 -88973672 - AluSq SINE Alu 0 313 5 311 198 0 128 chr11 61809902 61809988 -88973565 - MER41C LTR ERV1 -342 212 138 941 184 0 0 chr11 61809988 61810146 -88973407 - AluJb SINE Alu -18 294 137 909 161 7 7 chr11 61810148 61810297 -88973256 - MER41C LTR ERV1 -405 149 1 2465 153 36 36 chr11 61810297 61810479 -88973074 - L1 LINE L1 -1111 5035 4854 1806 113 15 98 chr11 61810479 61810805 -88972748 + AluSx SINE Alu 2 300 -12 2465 153 36 36 chr11 61810805 61811094 -88972459 - L1 LINE L1 -1291 4855 4564 4962 83 27 53 chr11 61811216 61811562 -88971991 + MER4E LTR ERV1 1 355 -411 2171 70 0 4 chr11 61811562 61811820 -88971733 - AluSq SINE Alu -56 257 1 4962 83 27 53 chr11 61811820 61812260 -88971293 + MER4E LTR ERV1 355 766 0 262 333 77 19 chr11 61812281 61812437 -88971116 + MIR SINE MIR 31 195 -67 2272 89 0 13 chr11 61813306 61813620 -88969933 + AluSx SINE Alu 1 310 -2 252 293 9 52 chr11 61813861 61813977 -88969576 - L2 LINE L2 -1 3312 3202 429 98 4 7 chr11 61814074 61814310 -88969243 + AluSx SINE Alu 4 295 -14 215 170 0 21 chr11 61815071 61815118 -88968435 + MIR SINE MIR 118 163 -99 334 261 31 31 chr11 61815118 61815248 -88968305 + L1ME3A LINE L1 6041 6170 0 822 173 0 8 chr11 61815531 61815658 -88967895 + FLAM_C SINE Alu 1 126 -17 547 253 121 22 chr11 61816311 61816614 -88966939 + L2 LINE L2 2750 3082 -190 24 0 0 0 chr11 61817438 61817462 -88966091 + AT_rich Low_complexity Low_complexity 1 24 0 2074 100 72 0 chr11 61818408 61818698 -88964855 - AluSq SINE Alu -2 311 1 296 295 53 0 chr11 61819189 61819284 -88964269 - L2 LINE L2 -4 3268 3169 353 235 51 10 chr11 61823193 61823291 -88960262 + MIR SINE MIR 50 151 -111 1971 162 0 0 chr11 61824424 61824721 -88958832 + AluJb SINE Alu 1 297 -15 2229 68 47 7 chr11 61824800 61825096 -88958457 + AluSq SINE Alu 1 308 -5 2080 102 46 0 chr11 61825119 61825403 -88958150 + AluSx SINE Alu 1 297 -15 561 262 37 11 chr11 61825549 61825736 -88957817 + MIR SINE MIR 70 261 -1 1907 155 3 3 chr11 61826494 61826785 -88956768 - AluJo SINE Alu -21 291 1 299 316 61 0 chr11 61827349 61827447 -88956106 + MIR SINE MIR 48 151 -111 258 143 0 0 chr11 61828700 61828742 -88954811 + L2 LINE L2 3258 3299 -14 212 122 82 0 chr11 61829496 61829545 -88954008 + A-rich Low_complexity Low_complexity 3 55 0 746 139 9 0 chr11 61829698 61829813 -88953740 + AluJb SINE Alu 190 305 -7 731 265 46 23 chr11 61833286 61833505 -88950048 + MIR SINE MIR 7 230 -32 1958 160 0 7 chr11 61833871 61834171 -88949382 + AluSx SINE Alu 1 298 -14 1039 98 0 0 chr11 61834228 61834360 -88949193 + AluSg/x SINE Alu 162 293 -17 1152 111 12 12 chr11 61835805 61835976 -88947577 - MER30B DNA MER1_type -19 171 1 339 281 23 35 chr11 61836929 61837066 -88946487 + GA-rich Low_complexity Low_complexity 4 140 -32 2350 75 6 35 chr11 61837066 61837384 -88946169 + AluY SINE Alu 1 309 -2 339 281 23 35 chr11 61837384 61837417 -88946136 + GA-rich Low_complexity Low_complexity 140 172 0 1990 160 3 3 chr11 61837985 61838297 -88945256 + AluJb SINE Alu 1 312 0 2332 116 30 25 chr11 61838768 61839130 -88944423 + THE1B LTR MaLR 1 364 0 473 296 28 14 chr11 61840140 61840286 -88943267 - MIR SINE MIR -58 150 36 2071 107 0 20 chr11 61840605 61840905 -88942648 - AluSx SINE Alu -18 294 1 540 333 91 13 chr11 61840949 61841180 -88942373 + MIR SINE MIR 6 254 -8 339 294 39 10 chr11 61841207 61841309 -88942244 - MIR SINE MIR -8 254 150 22 0 0 0 chr11 61842508 61842530 -88941023 + AT_rich Low_complexity Low_complexity 1 22 0 1104 283 99 40 chr11 61842744 61843117 -88940436 - LTR33A LTR ERVL 0 523 113 1630 176 95 9 chr11 61843117 61843453 -88940100 - MLT1A1 LTR MaLR 0 365 1 1104 283 99 40 chr11 61843453 61843573 -88939980 - LTR33A LTR ERVL -410 113 1 1548 195 36 28 chr11 61844098 61844457 -88939096 + MLT1A1 LTR MaLR 4 365 0 2156 113 0 10 chr11 61844484 61844794 -88938759 + AluSq SINE Alu 7 313 0 526 241 45 0 chr11 61844854 61844987 -88938566 + MER103 DNA DNA 26 164 -2 381 194 143 147 chr11 61845035 61845308 -88938245 + MLT1L LTR MaLR 22 293 -322 1433 254 122 63 chr11 61845405 61845882 -88937671 + MLT1G LTR MaLR 51 582 0 203 328 112 9 chr11 61846114 61846230 -88937323 + L2 LINE L2 2632 2759 -555 229 289 176 56 chr11 61846246 61846388 -88937165 + MER5B DNA MER1_type 17 175 -3 * 345 276 66 95 chr11 61846388 61846628 -88936925 + L2 LINE L2 3039 3271 -1 425 315 132 0 chr11 61847247 61847444 -88936109 - MIR SINE MIR -27 235 13 477 322 56 32 chr11 61847523 61847741 -88935812 - MIR SINE MIR -34 228 6 464 282 34 20 chr11 61847906 61848055 -88935498 - MIR SINE MIR -61 201 51 2141 109 0 0 chr11 61848761 61849065 -88934488 - AluSg SINE Alu -6 304 1 807 127 0 8 chr11 61849155 61849273 -88934280 - FRAM SINE Alu -8 168 52 403 351 13 7 chr11 61849284 61849435 -88934118 - MIR SINE MIR -109 153 2 2055 119 33 0 chr11 61849615 61849917 -88933636 - AluSx SINE Alu 0 312 1 265 314 23 0 chr11 61850458 61850544 -88933009 - MIR SINE MIR -15 247 160 351 0 0 0 chr11 61850601 61850640 -88932913 + (TG)n Simple_repeat Simple_repeat 2 40 0 609 259 24 6 chr11 61850677 61850843 -88932710 + MIR SINE MIR 94 262 0 322 297 68 9 chr11 61850858 61850984 -88932569 - MIR SINE MIR -70 138 30 181 403 8 8 chr11 61851762 61851881 -88931672 + L2 LINE L2 2715 2833 -481 821 181 0 0 chr11 61852247 61852380 -88931173 - AluJb SINE Alu -40 272 140 553 185 0 0 chr11 61852379 61852471 -88931082 - AluS SINE Alu -220 93 2 * 373 182 28 17 chr11 61853194 61853370 -88930183 + (CA)n Simple_repeat Simple_repeat 2 179 0 320 150 16 70 chr11 61853432 61853619 -88929934 + (CA)n Simple_repeat Simple_repeat 1 177 0 244 202 21 7 chr11 61853631 61853785 -88929768 + (CA)n Simple_repeat Simple_repeat 1 156 0 340 318 125 0 chr11 61854072 61854248 -88929305 + MIR SINE MIR 47 244 -18 237 33 0 0 chr11 61854321 61854351 -88929202 + (TCC)n Simple_repeat Simple_repeat 1 30 0 422 49 0 49 chr11 61854485 61854546 -88929007 + L1P5 LINE L1 5723 5780 -376 773 189 0 0 chr11 61854571 61854698 -88928855 + L1PB4 LINE L1 6008 6134 -22 268 189 19 0 chr11 61854721 61854774 -88928779 + MIR SINE MIR 107 160 -102 186 356 20 20 chr11 61855275 61855376 -88928177 + L2 LINE L2 3168 3268 -4 294 270 135 16 chr11 61855473 61855599 -88927954 + MIR SINE MIR 108 248 -14 194 307 13 27 chr11 61855673 61855748 -88927805 - MIR3 SINE MIR -16 192 119 251 313 0 0 chr11 61855825 61855889 -88927664 - MIR SINE MIR -111 97 34 21 0 0 0 chr11 61856631 61856652 -88926901 + AT_rich Low_complexity Low_complexity 1 21 0 268 344 62 8 chr11 61856732 61856860 -88926693 - MIR SINE MIR -115 147 13 1906 135 0 0 chr11 61857780 61858094 -88925459 - AluSx SINE Alu 0 314 1 183 100 0 0 chr11 61858199 61858229 -88925324 + (CA)n Simple_repeat Simple_repeat 2 31 0 380 20 0 20 chr11 61858691 61858741 -88924812 + (TAA)n Simple_repeat Simple_repeat 1 49 0 429 282 136 29 chr11 61858753 61858959 -88924594 - MIR SINE MIR -32 230 3 852 259 35 5 chr11 61859133 61859330 -88924223 + MIR SINE MIR 50 252 -10 455 267 74 51 chr11 61859455 61859582 -88923971 - L1M4 LINE L1 -3083 3063 2940 2284 80 3 3 chr11 61859582 61859883 -88923670 - AluSp SINE Alu -12 301 1 455 267 74 51 chr11 61859883 61860148 -88923405 - L1M4 LINE L1 -3206 2940 2662 252 320 100 10 chr11 61860292 61860392 -88923161 - MIR SINE MIR -126 136 28 183 271 21 0 chr11 61860484 61860532 -88923021 - L2 LINE L2 0 3313 3265 201 294 0 0 chr11 61860864 61860915 -88922638 + C-rich Low_complexity Low_complexity 5 55 0 467 326 68 55 chr11 61861106 61861342 -88922211 - MIR SINE MIR -9 253 15 1585 205 12 9 chr11 61861456 61861793 -88921760 + L1MD3 LINE L1 7658 7995 0 184 295 171 38 chr11 61862663 61862768 -88920785 - L2 LINE L2 -13 3259 3141 208 323 161 16 chr11 61862774 61862898 -88920655 + MIR SINE MIR 8 149 -113 336 294 63 35 chr11 61862898 61863041 -88920512 + MIR SINE MIR 116 262 0 211 224 20 0 chr11 61863704 61863753 -88919800 + L2 LINE L2 3263 3312 -1 237 239 34 102 chr11 61864355 61864443 -88919110 + MIR SINE MIR 108 189 -73 457 246 52 75 chr11 61864673 61864807 -88918746 + L2 LINE L2 3137 3267 -5 235 247 99 37 chr11 61865125 61865206 -88918347 - MIR SINE MIR -60 202 117 385 321 162 17 chr11 61865259 61865561 -88917992 - L3 LINE CR1 -1 1576 1231 186 310 84 0 chr11 61865802 61865873 -88917680 - MIR3 SINE MIR -26 182 106 235 208 65 100 chr11 61866016 61866141 -88917412 - MIR SINE MIR -29 179 75 292 264 54 60 chr11 61866357 61866556 -88916997 + MIR3 SINE MIR 5 200 -60 223 232 242 10 chr11 61866860 61866952 -88916601 - MIR SINE MIR -118 144 30 281 290 148 37 chr11 61866952 61867114 -88916439 - MER5A DNA MER1_type 0 189 10 258 293 13 0 chr11 61867136 61867211 -88916342 + L2 LINE L2 3197 3272 0 363 289 171 0 chr11 61867268 61867420 -88916133 - MIR SINE MIR -71 191 14 24 0 0 0 chr11 61868097 61868121 -88915432 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr11 61868138 61868160 -88915393 + GC_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr11 61868324 61868361 -88915192 + GC_rich Low_complexity Low_complexity 1 37 0 306 0 0 0 chr11 61869571 61869605 -88913948 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1708 138 3 7 chr11 61869608 61869890 -88913663 - AluJb SINE Alu -31 281 1 1068 201 58 108 chr11 61870084 61870283 -88913270 - LTR37A LTR ERV1 0 426 257 1942 128 0 7 chr11 61870283 61870572 -88912981 + AluSx SINE Alu 1 287 -25 1068 201 58 108 chr11 61870572 61870789 -88912764 - LTR37A LTR ERV1 -169 257 31 180 278 0 19 chr11 61870857 61870911 -88912642 - L3 LINE CR1 -151 1426 1374 1358 58 6 0 chr11 61870914 61871087 -88912466 + L1PA4 LINE L1 5980 6153 -2 1108 154 9 23 chr11 61871095 61871146 -88912407 + AluJo SINE Alu 86 136 -176 1794 88 27 109 chr11 61871146 61871477 -88912076 + AluYb8 SINE Alu 1 304 -14 1108 154 9 23 chr11 61871477 61871639 -88911914 + AluJo SINE Alu 136 296 -16 333 281 28 44 chr11 61871836 61871992 -88911561 - MIR SINE MIR -62 146 27 * 663 267 20 0 chr11 61871969 61872119 -88911434 + MIR SINE MIR 13 165 -97 1937 135 0 0 chr11 61872119 61872407 -88911146 + AluSx SINE Alu 1 288 -24 290 130 37 0 chr11 61872423 61872477 -88911076 + MIR SINE MIR 146 201 -61 1991 121 3 7 chr11 61872911 61873209 -88910344 + AluSx SINE Alu 4 300 -12 2110 107 3 0 chr11 61873478 61873776 -88909777 - AluSx SINE Alu -13 299 1 684 193 0 9 chr11 61874266 61874424 -88909129 - FLAM_C SINE Alu 0 165 9 1248 209 4 11 chr11 61874637 61874905 -88908648 + AluJo SINE Alu 30 295 -17 356 343 30 10 chr11 61876169 61876361 -88907192 - MIR SINE MIR -54 208 11 309 311 66 19 chr11 61878252 61878394 -88905159 - MIR SINE MIR -85 123 16 2195 105 7 0 chr11 61878847 61879152 -88904401 - AluSq SINE Alu -6 307 1 1879 139 0 47 chr11 61879560 61879877 -88903676 - AluJo SINE Alu -10 302 1 195 194 269 15 chr11 61880722 61880789 -88902764 + MIR SINE MIR 46 129 -79 1439 253 92 12 chr11 61881054 61881588 -88901965 + L2 LINE L2 2739 3313 0 1171 223 237 36 chr11 61881686 61882180 -88901373 + MLT1E LTR MaLR 1 593 0 1442 197 5 92 chr11 61882257 61882628 -88900925 + MLT1D LTR MaLR 2 340 -165 4512 34 4 0 chr11 61882752 61883278 -88900275 - L1PA3 LINE L1 0 6155 5628 817 142 121 0 chr11 61883771 61883912 -88899641 + MLT1D LTR MaLR 348 505 0 2008 136 3 0 chr11 61884395 61884703 -88898850 - AluSx SINE Alu -3 309 1 694 130 0 0 chr11 61884819 61884927 -88898626 - AluSg/x SINE Alu -17 293 186 1481 91 14 23 chr11 61884927 61885148 -88898405 - AluSq SINE Alu -94 219 1 2991 149 68 10 chr11 61885399 61885917 -88897636 + MER44D DNA MER2_type 1 603 -2 268 373 62 25 chr11 61886144 61886388 -88897165 - L2 LINE L2 -212 3060 2808 468 316 23 17 chr11 61886460 61886634 -88896919 + MER5B DNA MER1_type 4 178 0 198 0 0 0 chr11 61887955 61887977 -88895576 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1734 135 3 7 chr11 61887980 61888262 -88895291 - AluJb SINE Alu -31 281 1 1075 199 60 108 chr11 61888456 61888654 -88894899 - LTR37A LTR ERV1 0 426 257 1902 135 0 7 chr11 61888654 61888943 -88894610 + AluSx SINE Alu 1 287 -25 1075 199 60 108 chr11 61888943 61889160 -88894393 - LTR37A LTR ERV1 -169 257 31 180 278 0 19 chr11 61889228 61889282 -88894271 - L3 LINE CR1 -151 1426 1374 1370 48 6 0 chr11 61889285 61889452 -88894101 + L1PA4 LINE L1 5980 6147 -8 1096 170 4 30 chr11 61889466 61889517 -88894036 + AluJo SINE Alu 86 137 -175 1790 85 27 109 chr11 61889517 61889846 -88893707 + AluYb8 SINE Alu 1 302 -16 1096 170 4 30 chr11 61889846 61890024 -88893529 + AluJo SINE Alu 137 309 -3 372 22 0 0 chr11 61890291 61890336 -88893217 + (TG)n Simple_repeat Simple_repeat 1 45 0 270 0 0 0 chr11 61890335 61890365 -88893188 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 225 0 100 0 chr11 61890676 61890716 -88892837 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2137 82 7 20 chr11 61890718 61891012 -88892541 - AluSx SINE Alu -22 290 1 2514 119 26 5 chr11 61891105 61891492 -88892061 - L1MA4 LINE L1 -16 6284 5890 201 284 14 14 chr11 61891546 61891620 -88891933 + CT-rich Low_complexity Low_complexity 1 74 0 2085 101 45 0 chr11 61891659 61891946 -88891607 - AluSx SINE Alu -12 300 1 2203 68 47 7 chr11 61891969 61892265 -88891288 - AluSq SINE Alu -5 308 1 1951 162 0 0 chr11 61892344 61892641 -88890912 - AluJb SINE Alu -15 297 1 384 235 51 10 chr11 61893774 61893872 -88889681 - MIR SINE MIR -111 151 50 325 295 53 0 chr11 61897782 61897877 -88885676 + L2 LINE L2 3169 3268 -4 1946 100 76 7 chr11 61898368 61898659 -88884894 + AluSq SINE Alu 1 311 -2 24 0 0 0 chr11 61899606 61899630 -88883923 + AT_rich Low_complexity Low_complexity 1 24 0 626 253 121 22 chr11 61900454 61900757 -88882796 - L2 LINE L2 -190 3082 2750 818 173 0 8 chr11 61901410 61901537 -88882016 - FLAM_C SINE Alu -17 126 1 344 261 31 31 chr11 61901820 61901950 -88881603 - L1ME3A LINE L1 0 6170 6041 230 170 0 21 chr11 61901950 61901997 -88881556 - MIR SINE MIR -99 163 118 458 71 0 0 chr11 61902760 61902816 -88880737 - AluSx SINE Alu -15 297 242 1301 106 6 6 chr11 61902816 61902995 -88880558 - AluSx SINE Alu -130 182 4 2292 89 0 10 chr11 61903448 61903761 -88879792 - AluSx SINE Alu -2 310 1 306 333 77 19 chr11 61904630 61904786 -88878767 - MIR SINE MIR -67 195 31 5222 83 27 53 chr11 61904807 61905247 -88878306 - MER4E LTR ERV1 0 766 355 2145 70 0 4 chr11 61905247 61905505 -88878048 + AluSq SINE Alu 1 257 -56 5222 83 27 53 chr11 61905505 61905851 -88877702 - MER4E LTR ERV1 -411 355 1 2447 158 37 30 chr11 61905982 61906262 -88877291 + L1M2 LINE L1 4570 4856 -1290 1785 113 15 98 chr11 61906262 61906588 -88876965 - AluSx SINE Alu -12 300 2 2447 158 37 30 chr11 61906588 61906770 -88876783 + L1M2 LINE L1 4856 5035 -1111 909 161 7 7 chr11 61906770 61906919 -88876634 + MER41C LTR ERV1 1 149 -405 925 184 0 0 chr11 61906921 61907079 -88876474 + AluJb SINE Alu 137 294 -18 1870 174 18 97 chr11 61907079 61907186 -88876367 + MER41C LTR ERV1 138 252 -302 2352 98 3 3 chr11 61907186 61907493 -88876060 + AluSq SINE Alu 5 311 -2 1870 174 18 97 chr11 61907493 61907838 -88875715 + MER41C LTR ERV1 252 554 0 1842 159 3 22 chr11 61907855 61908207 -88875346 - MER4A LTR ERV1 0 664 261 640 131 0 10 chr11 61908207 61908306 -88875247 - MER4A LTR ERV1 -566 98 1 2465 158 112 39 chr11 61908338 61908952 -88874601 - MER4A-int LTR ERV1 -4947 1651 993 280 189 0 38 chr11 61908972 61909025 -88874528 - LTR49 LTR ERV1 -282 313 263 2899 85 63 26 chr11 61909038 61909729 -88873824 - MER4A-int LTR ERV1 -5765 833 1 1904 133 3 24 chr11 61909732 61910085 -88873468 - MER4A LTR ERV1 0 664 261 568 144 21 10 chr11 61910085 61910182 -88873371 - MER4A LTR ERV1 -566 98 1 1994 161 22 9 chr11 61910182 61910731 -88872822 + L1M2 LINE L1 5045 5600 -691 234 174 0 0 chr11 61910731 61910777 -88872776 + (TG)n Simple_repeat Simple_repeat 2 47 0 2239 129 3 0 chr11 61910929 61911240 -88872313 + AluSx SINE Alu 1 312 0 241 119 0 24 chr11 61911501 61911543 -88872010 - L2 LINE L2 -4 3309 3269 318 282 122 29 chr11 61911773 61912093 -88871460 - L1MC/D LINE L1 -364 5757 5431 207 146 0 0 chr11 61912839 61912880 -88870673 + (TG)n Simple_repeat Simple_repeat 1 41 0 251 150 0 0 chr11 61912886 61912926 -88870627 + MLT1C LTR MaLR 31 70 -397 895 124 0 28 chr11 61912930 61913075 -88870478 + MLT1C LTR MaLR 302 442 -25 273 154 0 0 chr11 61913168 61913207 -88870346 - MLT1B LTR MaLR 0 467 429 827 169 8 0 chr11 61913207 61913337 -88870216 + FLAM_C SINE Alu 1 131 -2 1575 186 31 78 chr11 61913367 61913753 -88869800 - MLT1B LTR MaLR -22 368 1 232 254 46 52 chr11 61914209 61914382 -88869171 - L1P4 LINE L1 -727 5441 5270 2190 132 0 0 chr11 61914418 61914728 -88868825 - AluSq SINE Alu -3 310 1 1744 184 13 0 chr11 61914847 61915152 -88868401 + AluJo SINE Alu 1 309 -3 28 0 0 0 chr11 61915158 61915186 -88868367 + AT_rich Low_complexity Low_complexity 1 28 0 2423 79 0 0 chr11 61915293 61915596 -88867957 - AluY SINE Alu -8 303 1 2161 144 0 0 chr11 61915598 61915904 -88867649 - AluSx SINE Alu -6 306 1 711 217 0 21 chr11 61916456 61916599 -88866954 - AluJb SINE Alu -107 205 66 227 342 46 40 chr11 61916842 61916994 -88866559 - MIR3 SINE MIR -22 186 34 24 32 0 0 chr11 61917061 61917092 -88866461 + AT_rich Low_complexity Low_complexity 1 31 0 219 338 103 0 chr11 61917092 61917160 -88866393 - L2 LINE L2 -38 3234 3160 26 0 0 0 chr11 61917301 61917327 -88866226 + AT_rich Low_complexity Low_complexity 1 26 0 2551 38 0 3 chr11 61917709 61918002 -88865551 - AluY SINE Alu -19 292 1 21 0 0 0 chr11 61918012 61918033 -88865520 + AT_rich Low_complexity Low_complexity 1 21 0 5662 156 18 32 chr11 61918033 61918251 -88865302 - L1PA16 LINE L1 -20 6146 5927 1611 202 0 16 chr11 61918251 61918558 -88864995 - AluJb SINE Alu -10 302 1 5662 156 18 32 chr11 61918558 61919337 -88864216 - L1PA16 LINE L1 -239 5927 5170 2313 112 3 0 chr11 61919337 61919649 -88863904 - AluSq SINE Alu 0 313 1 5662 156 18 32 chr11 61919649 61920015 -88863538 - L1PA16 LINE L1 -996 5170 4801 236 223 0 53 chr11 61920300 61920394 -88863159 + (TA)n Simple_repeat Simple_repeat 1 89 0 1812 113 16 16 chr11 61920395 61920674 -88862879 + AluSx SINE Alu 29 307 0 414 39 0 0 chr11 61920901 61920953 -88862600 + (CA)n Simple_repeat Simple_repeat 1 52 0 427 227 65 39 chr11 61921237 61921391 -88862162 - L1ME4a LINE L1 -256 5865 5708 2114 126 3 7 chr11 61921801 61922103 -88861450 - AluSp SINE Alu -12 301 1 275 288 0 0 chr11 61922104 61922177 -88861376 - L1ME4a LINE L1 -517 5604 5532 245 214 68 0 chr11 61922236 61922353 -88861200 + (TATAA)n Simple_repeat Simple_repeat 1 125 0 24 53 0 0 chr11 61922383 61922421 -88861132 + AT_rich Low_complexity Low_complexity 1 38 0 281 364 43 0 chr11 61923254 61923394 -88860159 + MIR SINE MIR 117 262 0 2247 70 0 4 chr11 61923689 61923962 -88859591 - AluY SINE Alu -5 306 35 465 84 0 0 chr11 61924002 61924073 -88859480 - L1MA3 LINE L1 0 6305 6235 291 336 115 8 chr11 61924110 61924345 -88859208 - MIR SINE MIR 0 262 3 239 308 39 29 chr11 61924788 61924892 -88858661 + MIR SINE MIR 37 141 -67 260 137 20 0 chr11 61924939 61924990 -88858563 + (TA)n Simple_repeat Simple_repeat 1 52 0 212 204 0 19 chr11 61925035 61925089 -88858464 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 195 42 0 0 chr11 61925337 61925361 -88858192 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 488 191 85 0 chr11 61925361 61925455 -88858098 - FRAM SINE Alu -25 151 50 599 77 0 0 chr11 61925570 61925648 -88857905 - L1P4 LINE L1 -391 5772 5695 2359 68 25 16 chr11 61925648 61925958 -88857595 + L1PA13 LINE L1 5838 6162 -1 997 135 0 0 chr11 61925967 61926108 -88857445 + AluJo SINE Alu 1 141 -171 216 0 0 0 chr11 61926126 61926150 -88857403 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 464 271 104 22 chr11 61926253 61926618 -88856935 + L1ME4a LINE L1 5727 6121 0 2375 94 0 0 chr11 61926696 61926995 -88856558 + AluSq SINE Alu 1 299 -14 452 302 16 8 chr11 61927390 61927519 -88856034 + MIR SINE MIR 20 149 -113 1940 140 3 3 chr11 61927684 61928143 -88855410 - AluSx SINE Alu 0 461 3 2100 94 42 0 chr11 61928591 61928877 -88854676 - AluSp SINE Alu -5 308 11 318 98 0 0 chr11 61928877 61928918 -88854635 - Alu SINE Alu -260 41 1 21 36 0 0 chr11 61929982 61930010 -88853543 + AT_rich Low_complexity Low_complexity 1 28 0 270 308 0 0 chr11 61930363 61930428 -88853125 + L2 LINE L2 3203 3267 -5 252 259 52 0 chr11 61930958 61931016 -88852537 + L2 LINE L2 3184 3244 -28 904 269 94 55 chr11 61931194 61931681 -88851872 + MLT1K LTR MaLR 83 588 0 2365 106 0 0 chr11 61932290 61932602 -88850951 - AluSx SINE Alu 0 312 1 26 0 0 0 chr11 61934302 61934328 -88849225 + AT_rich Low_complexity Low_complexity 1 26 0 287 351 7 23 chr11 61934410 61934554 -88848999 - MIR SINE MIR -61 147 23 356 234 175 7 chr11 61934830 61934967 -88848586 - MIR SINE MIR -3 259 100 297 264 76 90 chr11 61936991 61937135 -88846418 - MIR SINE MIR -85 123 16 2308 105 7 0 chr11 61937586 61937891 -88845662 - AluSq SINE Alu -6 307 1 1984 139 0 47 chr11 61938299 61938616 -88844937 - AluJo SINE Alu -10 302 1 197 194 269 15 chr11 61939461 61939528 -88844025 + MIR SINE MIR 46 129 -79 1408 249 91 12 chr11 61939793 61940328 -88843225 + L2 LINE L2 2739 3313 0 1307 217 237 36 chr11 61940426 61940920 -88842633 + MLT1E LTR MaLR 1 593 0 1413 194 5 92 chr11 61940997 61941368 -88842185 + MLT1D LTR MaLR 2 340 -165 4429 34 4 0 chr11 61941492 61942018 -88841535 - L1PA3 LINE L1 0 6155 5628 760 142 121 0 chr11 61942511 61942652 -88840901 + MLT1D LTR MaLR 348 505 0 2133 136 3 0 chr11 61943135 61943443 -88840110 - AluSx SINE Alu -3 309 1 2251 92 0 3 chr11 61943560 61943853 -88839700 - AluSc SINE Alu -17 292 1 258 32 0 0 chr11 61944083 61944114 -88839439 + (TTA)n Simple_repeat Simple_repeat 3 33 0 272 26 0 0 chr11 61944115 61944154 -88839399 - L1MA3 LINE L1 0 6305 6267 2307 106 3 0 chr11 61944420 61944721 -88838832 + AluSp SINE Alu 1 302 -11 4684 104 33 8 chr11 61944770 61945493 -88838060 - L1PA13 LINE L1 -3 6160 5420 201 265 0 0 chr11 61946096 61946145 -88837408 - MIR SINE MIR -109 99 51 481 315 13 13 chr11 61946839 61946988 -88836565 - MER5A DNA MER1_type -6 183 35 839 155 0 0 chr11 61947571 61947700 -88835853 + FLAM_C SINE Alu 9 137 -6 241 250 0 0 chr11 61947752 61947804 -88835749 + Charlie4 DNA MER1_type 1910 1961 0 669 259 37 11 chr11 61948638 61948827 -88834726 - MIR SINE MIR -10 252 59 338 198 125 10 chr11 61949747 61949843 -88833710 + L2 LINE L2 3191 3297 -16 202 311 87 39 chr11 61949954 61950057 -88833496 - L2 LINE L2 -221 3051 2944 25 31 0 0 chr11 61950605 61950637 -88832916 + AT_rich Low_complexity Low_complexity 1 32 0 449 316 23 18 chr11 61950660 61950831 -88832722 - MER5B DNA MER1_type -3 175 4 284 373 62 25 chr11 61950903 61951147 -88832406 + L2 LINE L2 2808 3060 -212 228 354 62 21 chr11 61951227 61951371 -88832182 + MIR SINE MIR 1 150 -112 2931 149 68 10 chr11 61951374 61951892 -88831661 - MER44D DNA MER2_type -2 603 1 1549 91 14 23 chr11 61952143 61952364 -88831189 + AluSq SINE Alu 1 219 -94 835 82 0 9 chr11 61952364 61952474 -88831079 + AluSp/q SINE Alu 188 296 -17 459 282 9 0 chr11 61952751 61952861 -88830692 + MER81 DNA DNA 4 114 0 1232 148 67 9 chr11 61953347 61953570 -88829983 + LTR57 LTR ERVL 41 276 -135 2119 97 19 7 chr11 61953577 61953885 -88829668 - AluSq SINE Alu -1 312 1 352 330 49 49 chr11 61955273 61955458 -88828095 - MIR3 SINE MIR -4 204 20 324 70 0 0 chr11 61955764 61955807 -88827746 + (TG)n Simple_repeat Simple_repeat 2 44 0 1841 137 17 0 chr11 61956292 61956591 -88826962 - MER7A DNA MER2_type 0 346 45 293 228 56 72 chr11 61956882 61957013 -88826540 - MIR SINE MIR -60 148 61 239 250 0 0 chr11 61957882 61957930 -88825623 - MIR SINE MIR -129 79 32 222 339 102 17 chr11 61958349 61958526 -88825027 + MIR SINE MIR 20 211 -51 26 30 0 0 chr11 61958813 61958846 -88824707 + AT_rich Low_complexity Low_complexity 1 33 0 237 348 135 45 chr11 61959294 61959671 -88823882 + L3 LINE CR1 1145 1555 -22 6218 86 18 14 chr11 61960338 61961287 -88822266 + L1MA2 LINE L1 5352 6304 0 1665 202 90 24 chr11 61961608 61962063 -88821490 + MLT2B1 LTR ERVL 1 485 -35 2210 159 38 94 chr11 61962064 61962415 -88821138 - L1MA2 LINE L1 -316 7407 7038 2030 116 3 14 chr11 61962415 61962730 -88820823 - AluSq SINE Alu 0 316 5 2210 159 38 94 chr11 61962730 61963208 -88820345 - L1MA2 LINE L1 -685 7038 6637 434 125 62 0 chr11 61963218 61963298 -88820255 + L1PB2 LINE L1 5840 5924 -227 231 59 0 0 chr11 61963303 61963337 -88820216 - L1P5 LINE L1 -318 5833 5800 297 162 0 54 chr11 61963340 61963414 -88820139 - L1MA2 LINE L1 -2165 5400 5331 5477 206 18 10 chr11 61963424 61964816 -88818737 - L1MA2 LINE L1 -2365 5200 3798 326 147 0 9 chr11 61964831 61964895 -88818658 - Alu SINE Alu -250 52 1 726 215 45 8 chr11 61964895 61965137 -88818416 - L1MA2 LINE L1 -3930 3635 3385 759 297 162 6 chr11 61965137 61965464 -88818089 + L2 LINE L2 1873 2250 -1064 441 285 150 19 chr11 61965678 61965945 -88817608 + MLT1H LTR MaLR 241 549 0 2082 166 43 55 chr11 61966453 61966758 -88816795 - L1MB8 LINE L1 -44 6134 5827 2314 104 0 0 chr11 61966758 61967055 -88816498 - AluSq SINE Alu -16 297 1 2082 166 43 55 chr11 61967055 61967134 -88816419 - L1MB8 LINE L1 -351 5827 5749 1658 187 17 3 chr11 61967134 61967423 -88816130 - AluJb SINE Alu -19 293 1 2082 166 43 55 chr11 61967423 61967568 -88815985 - L1MB8 LINE L1 -429 5749 5610 424 135 46 192 chr11 61967580 61967658 -88815895 - L1MB8 LINE L1 -743 5403 5315 315 0 0 0 chr11 61967658 61967693 -88815860 + (CA)n Simple_repeat Simple_repeat 2 36 0 1942 154 7 17 chr11 61967702 61968000 -88815553 - AluSx SINE Alu -16 296 2 424 135 46 192 chr11 61968000 61968146 -88815407 - L1MB8 LINE L1 -840 5306 5196 525 354 72 35 chr11 61968146 61968578 -88814975 + L2 LINE L2 1948 2395 -919 586 272 103 5 chr11 61968582 61968766 -88814787 + MIR SINE MIR 61 262 0 22 0 0 0 chr11 61969186 61969208 -88814345 + AT_rich Low_complexity Low_complexity 1 22 0 394 287 39 31 chr11 61969403 61969532 -88814021 + L2 LINE L2 3134 3263 -9 376 103 0 175 chr11 61969999 61970096 -88813457 - MADE1 DNA Mariner 0 80 1 1256 260 72 78 chr11 61970129 61970645 -88812908 - MER115 DNA AcHobo -3 690 178 277 270 0 0 chr11 61970717 61970780 -88812773 - Zaphod DNA AcHobo -3964 67 5 23 0 0 0 chr11 61970895 61970918 -88812635 + AT_rich Low_complexity Low_complexity 1 23 0 360 216 230 34 chr11 61971369 61971517 -88812036 + MER5A DNA MER1_type 2 178 -11 745 253 28 11 chr11 61971662 61971840 -88811713 + MER5A DNA MER1_type 8 188 -1 321 263 11 21 chr11 61974417 61974512 -88809041 - L1M4 LINE L1 -2391 3755 3662 2048 114 10 17 chr11 61974540 61974838 -88808715 + AluY SINE Alu 1 296 -15 1867 114 30 4 chr11 61975091 61975355 -88808198 + AluSx SINE Alu 36 306 -6 1392 186 62 6 chr11 61976129 61976592 -88806961 - L1MB7 LINE L1 -59 6623 6070 535 223 9 0 chr11 61977203 61977315 -88806238 - MIR SINE MIR -83 179 67 288 260 0 0 chr11 61977580 61977657 -88805896 + L1M4 LINE L1 5624 5700 -474 1896 190 28 153 chr11 61977738 61977979 -88805574 - L1MB7 LINE L1 -1769 4875 4605 1836 143 0 14 chr11 61977979 61978258 -88805295 - AluSx SINE Alu -37 275 1 1896 190 28 153 chr11 61978258 61978778 -88804775 - L1MB7 LINE L1 -2039 4605 4242 3012 75 48 0 chr11 61978778 61979193 -88804360 - L1PA11 LINE L1 -3 6171 5737 1896 190 28 153 chr11 61979193 61979330 -88804223 - L1MB7 LINE L1 -2402 4242 4089 4004 83 15 0 chr11 61979341 61979886 -88803667 - L1PA10 LINE L1 -1 6167 5615 23613 166 25 38 chr11 61979886 61980246 -88803307 - L1PA11 LINE L1 -481 5687 5324 2252 97 0 13 chr11 61980246 61980545 -88803008 - AluSx SINE Alu -13 299 5 23613 166 25 38 chr11 61980545 61985937 -88797616 - L1PA11 LINE L1 -844 5324 2 528 177 30 55 chr11 61985939 61986103 -88797450 - L1MB7 LINE L1 -2531 4113 3954 965 248 73 16 chr11 61986160 61986475 -88797078 - L1MB7 LINE L1 -6190 352 20 1360 152 71 71 chr11 61986813 61987110 -88796443 - AluJo SINE Alu -15 297 1 361 283 67 44 chr11 61988001 61988181 -88795372 + LTR16A1 LTR ERVL 265 448 -9 222 279 18 54 chr11 61988184 61988295 -88795258 - MIR SINE MIR -73 135 29 21 0 0 0 chr11 61988475 61988496 -88795057 + AT_rich Low_complexity Low_complexity 1 21 0 2270 92 3 0 chr11 61991237 61991530 -88792023 + AluSp SINE Alu 2 295 -18 1464 98 10 5 chr11 61991994 61992197 -88791356 + AluSp SINE Alu 92 295 -18 189 107 0 0 chr11 61993585 61993613 -88789940 + (CA)n Simple_repeat Simple_repeat 1 28 0 2635 98 31 5 chr11 61993627 61994015 -88789538 - MER48 LTR ERV1 0 398 1 209 152 0 0 chr11 61994065 61994098 -88789455 + L2 LINE L2 3273 3305 -8 1736 162 0 14 chr11 61994135 61994425 -88789128 + AluJb SINE Alu 1 286 -26 21 0 0 0 chr11 61996512 61996533 -88787020 + AT_rich Low_complexity Low_complexity 1 21 0 226 32 0 0 chr11 61997804 61997835 -88785718 - L1P2 LINE L1 -520 5635 5605 3603 36 0 9 chr11 61997835 61998278 -88785275 + L1PA5 LINE L1 5713 6151 -3 427 331 92 12 chr11 61998291 61998629 -88784924 + L1M4 LINE L1 4480 4844 -1302 1057 145 0 29 chr11 61999032 61999204 -88784349 - FRAM SINE Alu -15 161 1 773 149 0 8 chr11 61999237 61999371 -88784182 - L1PB1 LINE L1 -60 6807 6675 2070 110 0 7 chr11 61999490 61999781 -88783772 - AluY SINE Alu -22 289 1 13965 196 16 8 chr11 61999781 62004966 -88778587 - L1PB1 LINE L1 -178 6689 1395 528 233 67 16 chr11 62004946 62005139 -88778414 - L1PB1 LINE L1 -6647 216 14 * 676 176 38 0 chr11 62005139 62005298 -88778255 - L1MA7 LINE L1 -1 6290 6126 824 153 37 42 chr11 62005298 62005488 -88778065 + L1MA8 LINE L1 6028 6216 -75 508 57 0 91 chr11 62005490 62005578 -88777975 - MADE1 DNA Mariner 0 80 1 271 176 44 0 chr11 62005621 62005689 -88777864 + L1MA8 LINE L1 6221 6291 0 258 54 0 0 chr11 62005701 62005738 -88777815 - L1MA8 LINE L1 -164 6127 6091 1211 133 8 30 chr11 62005756 62005990 -88777563 - L1MA8 LINE L1 -169 6122 5894 1482 131 74 48 chr11 62005993 62006330 -88777223 - L1MA7 LINE L1 0 6291 5946 513 324 101 65 chr11 62007392 62007809 -88775744 - L2 LINE L2 -4 3268 2837 2045 126 3 13 chr11 62007884 62008186 -88775367 - AluSx SINE Alu -12 300 2 807 284 56 79 chr11 62008419 62008479 -88775074 + L2 LINE L2 2289 2349 -965 2229 93 3 7 chr11 62008479 62008769 -88774784 + AluSc SINE Alu 1 289 -20 807 284 56 79 chr11 62008769 62009058 -88774495 + L2 LINE L2 2349 2643 -671 1757 202 33 72 chr11 62009058 62009544 -88774009 - MLT1C LTR MaLR 0 467 1 807 284 56 79 chr11 62009544 62009819 -88773734 + L2 LINE L2 2643 2972 -342 853 137 0 0 chr11 62009827 62009958 -88773595 - THE1B LTR MaLR 0 364 234 2504 37 0 10 chr11 62009966 62010262 -88773291 - AluY SINE Alu -12 299 7 195 235 0 0 chr11 62010362 62010413 -88773140 + T-rich Low_complexity Low_complexity 1 51 0 427 102 21 75 chr11 62010442 62010629 -88772924 + (TTCTC)n Simple_repeat Simple_repeat 2 178 0 345 183 110 0 chr11 62010634 62010716 -88772837 - AluJo SINE Alu -4 298 208 634 171 60 0 chr11 62010729 62010846 -88772707 - AluJo SINE Alu -188 124 1 3984 170 28 39 chr11 62011640 62012192 -88771361 - L1MD1 LINE L1 -11 6231 5691 2269 99 0 0 chr11 62012192 62012484 -88771069 - AluSg SINE Alu -18 292 1 3984 170 28 39 chr11 62012484 62012827 -88770726 - L1MD1 LINE L1 -551 5691 5346 1052 44 0 0 chr11 62013868 62014003 -88769550 - L1PA4 LINE L1 -170 5985 5851 1397 24 24 0 chr11 62014003 62014172 -88769381 + L1PA4 LINE L1 5981 6153 -2 401 232 65 54 chr11 62014937 62015105 -88768448 - LTR16A LTR ERVL -263 187 18 193 255 20 0 chr11 62015739 62015790 -88767763 - L2 LINE L2 -6 3266 3215 2385 79 0 32 chr11 62016267 62016583 -88766970 + AluY SINE Alu 1 306 -5 516 286 88 51 chr11 62016716 62016766 -88766787 + L2 LINE L2 2930 2977 -336 2207 140 14 16 chr11 62016766 62016907 -88766646 - THE1B LTR MaLR 0 364 224 2552 36 0 10 chr11 62016907 62017209 -88766344 - AluY SINE Alu -12 299 1 2207 140 14 16 chr11 62017209 62017432 -88766121 - THE1B LTR MaLR -140 224 1 11620 93 9 11 chr11 62017432 62019015 -88764538 - THE1B-int LTR MaLR 0 1580 1 2150 126 57 17 chr11 62019015 62019365 -88764188 - THE1B LTR MaLR 0 364 1 516 286 88 51 chr11 62019365 62019585 -88763968 + L2 LINE L2 2976 3212 -101 1024 225 55 52 chr11 62019759 62020124 -88763429 + HsTC2 DNA Tc2 1233 1774 -124 227 163 0 0 chr11 62022220 62022269 -88761284 - L1M4 LINE L1 -2235 3911 3863 1899 133 174 8 chr11 62022420 62022787 -88760766 - MSTA LTR MaLR 0 428 1 513 368 50 13 chr11 62023112 62023430 -88760123 - ERVL LTR ERVL -1413 4351 4022 * 1318 288 39 3 chr11 62023421 62023810 -88759743 - ERVL LTR ERVL -2023 2973 2571 206 167 21 21 chr11 62024124 62024172 -88759381 + GA-rich Low_complexity Low_complexity 2 49 0 984 226 77 79 chr11 62024186 62024589 -88758964 + L2 LINE L2 1743 2144 -1170 3162 127 49 4 chr11 62024737 62025226 -88758327 + MER9 LTR ERVK 1 511 0 28302 67 19 14 chr11 62025226 62025979 -88757574 + HERVK9 LTR ERVK 1 749 -5167 186 228 0 88 chr11 62025979 62026036 -88757517 + MER5B DNA MER1_type 58 109 -69 28302 67 19 14 chr11 62026036 62029148 -88754405 + HERVK9 LTR ERVK 749 3941 -1975 3393 94 5 4 chr11 62029180 62030052 -88753501 + HERVK9 LTR ERVK 4745 5634 -282 2080 111 4 17 chr11 62030093 62030434 -88753119 + HERVK9 LTR ERVK 4922 5916 0 3187 129 47 4 chr11 62030434 62030924 -88752629 + MER9 LTR ERVK 1 511 0 2384 94 0 0 chr11 62032075 62032373 -88751180 + AluY SINE Alu 3 300 -11 2911 190 133 48 chr11 62032758 62033661 -88749892 - MER52C LTR ERV1 0 1278 16 258 214 71 7 chr11 62034216 62034370 -88749183 + (TA)n Simple_repeat Simple_repeat 1 164 0 304 180 20 60 chr11 62034424 62034524 -88749029 + (TATATG)n Simple_repeat Simple_repeat 3 98 0 256 294 72 19 chr11 62034535 62034797 -88748756 - L1ME LINE L1 -299 5822 5547 26 0 0 0 chr11 62034905 62034931 -88748622 + AT_rich Low_complexity Low_complexity 1 26 0 905 164 12 0 chr11 62035096 62035261 -88748292 - L1MD2 LINE L1 0 6359 6193 2005 186 28 12 chr11 62035261 62035692 -88747861 - L1MD1 LINE L1 -165 6077 5640 1782 228 48 24 chr11 62035900 62036405 -88747148 + MER119 DNA MER1_type 15 531 -52 21 0 0 0 chr11 62036978 62036999 -88746554 + AT_rich Low_complexity Low_complexity 1 21 0 268 243 9 19 chr11 62037100 62037207 -88746346 + L1M4 LINE L1 5176 5281 -865 302 297 76 35 chr11 62037238 62037383 -88746170 + L1MC4 LINE L1 7436 7586 -456 309 235 35 0 chr11 62037393 62037478 -88746075 + L1M LINE L1 5282 5369 -797 850 138 0 0 chr11 62037481 62037597 -88745956 + AluSq/x SINE Alu 3 118 -194 28 48 0 0 chr11 62037918 62037960 -88745593 + AT_rich Low_complexity Low_complexity 1 42 0 1964 152 3 0 chr11 62038008 62038318 -88745235 + AluSq SINE Alu 1 311 -2 330 289 248 0 chr11 62038771 62038920 -88744633 + MER5A DNA MER1_type 1 186 -3 777 226 50 6 chr11 62038979 62039160 -88744393 + MER5A DNA MER1_type 1 189 0 1986 149 7 3 chr11 62040300 62040713 -88742840 - AluSx SINE Alu 0 420 7 397 140 28 50 chr11 62040801 62040980 -88742573 + CT-rich Low_complexity Low_complexity 4 178 0 1042 128 124 77 chr11 62041229 62041501 -88742052 - MSTA LTR MaLR -27 401 117 1933 149 30 0 chr11 62041501 62041829 -88741724 + MER1B DNA MER1_type 2 339 0 758 135 8 8 chr11 62041829 62041954 -88741599 - MSTA LTR MaLR -303 125 1 21 0 0 0 chr11 62042285 62042306 -88741247 + AT_rich Low_complexity Low_complexity 1 21 0 302 87 0 59 chr11 62042328 62042367 -88741186 + L1MA1 LINE L1 6214 6250 -50 503 30 0 15 chr11 62042367 62042433 -88741120 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 302 87 0 59 chr11 62042433 62042449 -88741104 + L1MA1 LINE L1 6250 6265 -35 23 33 0 0 chr11 62042451 62042481 -88741072 + AT_rich Low_complexity Low_complexity 1 30 0 273 277 138 0 chr11 62042640 62042734 -88740819 - MIR SINE MIR 0 262 156 459 266 8 0 chr11 62042734 62042858 -88740695 - FLAM_A SINE Alu 0 142 18 459 263 75 25 chr11 62042862 62043022 -88740531 - MIR SINE MIR -93 169 2 437 350 29 8 chr11 62044668 62044911 -88738642 - L2 LINE L2 -100 3213 2966 292 15 3 0 chr11 62044911 62044956 -88738597 + L1PA3 LINE L1 6106 6152 -3 2114 309 121 24 chr11 62044974 62045307 -88738246 - L2 LINE L2 -360 2954 2655 637 250 83 10 chr11 62045307 62045511 -88738042 + MER20 DNA MER1_type 1 219 0 2114 309 121 24 chr11 62045511 62046305 -88737248 - L2 LINE L2 -659 2655 1718 357 140 11 15 chr11 62047166 62047233 -88736320 - AluSc SINE Alu -3 296 238 198 0 0 0 chr11 62047233 62047255 -88736298 + (T)n Simple_repeat Simple_repeat 1 22 0 28 0 0 0 chr11 62047427 62047455 -88736098 + AT_rich Low_complexity Low_complexity 1 28 0 426 319 110 11 chr11 62047911 62048102 -88735451 - MIR SINE MIR -40 222 13 271 318 34 0 chr11 62048297 62048385 -88735168 + MIR SINE MIR 31 121 -141 219 36 0 0 chr11 62048529 62048557 -88734996 + (A)n Simple_repeat Simple_repeat 1 28 0 3050 118 40 0 chr11 62049419 62049894 -88733659 - L1PA13 LINE L1 -13 6150 5657 290 238 218 20 chr11 62050288 62050389 -88733164 - MIR SINE MIR -112 150 30 228 333 111 0 chr11 62050422 62050503 -88733050 - MIR SINE MIR -171 91 2 604 314 85 28 chr11 62050531 62050779 -88732774 + MIR SINE MIR 1 262 0 2207 155 54 33 chr11 62051381 62051806 -88731747 + Tigger2a DNA MER2_type 1 434 0 22 35 0 0 chr11 62052041 62052070 -88731483 + AT_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr11 62052777 62052813 -88730740 + AT_rich Low_complexity Low_complexity 1 36 0 1706 163 0 27 chr11 62052813 62053113 -88730440 - AluSx SINE Alu -20 292 1 1453 199 13 10 chr11 62053376 62053767 -88729786 - L1M1 LINE L1 -762 5384 5061 2141 90 0 0 chr11 62053767 62054040 -88729513 + L1PB1 LINE L1 5864 6151 0 360 0 0 0 chr11 62054082 62054122 -88729431 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 3373 293 128 30 chr11 62054726 62055084 -88728469 + L2 LINE L2 1263 1585 -1728 1491 174 0 52 chr11 62055084 62055371 -88728182 - AluJb SINE Alu -36 276 5 3373 293 128 30 chr11 62055371 62055416 -88728137 + L2 LINE L2 1585 1624 -1689 243 0 0 0 chr11 62055416 62055443 -88728110 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3373 293 128 30 chr11 62055443 62056912 -88726641 + L2 LINE L2 1624 3309 -4 2412 60 0 10 chr11 62057232 62057532 -88726021 - AluY SINE Alu -10 301 5 623 296 41 0 chr11 62057541 62057713 -88725840 + MIR SINE MIR 53 231 -31 2365 58 13 19 chr11 62057789 62058098 -88725455 + AluSq SINE Alu 3 309 -4 300 48 0 0 chr11 62058386 62058428 -88725125 + L1PA2 LINE L1 6111 6152 -3 252 207 98 49 chr11 62058431 62058513 -88725040 - MIR SINE MIR -96 166 81 2186 124 0 0 chr11 62059595 62059894 -88723659 - AluSc SINE Alu -10 299 1 31 76 0 0 chr11 62060060 62060126 -88723427 + AT_rich Low_complexity Low_complexity 1 66 0 36 40 0 0 chr11 62060758 62060808 -88722745 + AT_rich Low_complexity Low_complexity 1 50 0 201 227 23 0 chr11 62062962 62063006 -88720547 + (TA)n Simple_repeat Simple_repeat 2 46 0 931 171 103 103 chr11 62063610 62063949 -88719604 + MER44D DNA MER2_type 1 609 0 225 0 0 0 chr11 62065074 62065099 -88718454 + (T)n Simple_repeat Simple_repeat 1 25 0 2173 113 13 13 chr11 62065369 62065678 -88717875 - AluSq SINE Alu -4 309 1 1021 104 8 0 chr11 62065678 62065812 -88717741 - AluSq/x SINE Alu -177 135 1 1671 237 91 2 chr11 62066405 62066810 -88716743 - MLT2B1 LTR ERVL -79 441 1 850 176 31 5 chr11 62067207 62067400 -88716153 + L1M4 LINE L1 4122 4319 -1827 692 191 8 8 chr11 62067521 62067652 -88715901 + FLAM_C SINE Alu 1 131 -12 21 82 0 0 chr11 62068046 62068095 -88715458 + AT_rich Low_complexity Low_complexity 1 49 0 1104 269 117 64 chr11 62068235 62068561 -88714992 + L1M4 LINE L1 3497 3804 -2342 1815 177 3 7 chr11 62068561 62068855 -88714698 - AluJb SINE Alu -19 293 1 1104 269 117 64 chr11 62068855 62070081 -88713472 + L1M4 LINE L1 3804 5132 -1014 1941 112 3 41 chr11 62070312 62070640 -88712913 - AluSx SINE Alu 0 317 1 888 334 113 26 chr11 62072357 62073006 -88710547 + L2 LINE L2 1717 2421 -893 2829 199 59 22 chr11 62073007 62073685 -88709868 - MER67C LTR ERV1 0 710 8 1224 331 77 10 chr11 62073685 62074451 -88709102 + L2 LINE L2 2418 3237 -76 588 240 94 0 chr11 62074921 62075092 -88708461 - MER5A DNA MER1_type -2 187 1 3260 32 10 0 chr11 62075299 62075699 -88707854 - L1P LINE L1 -1607 4539 4136 279 356 89 0 chr11 62076500 62076646 -88706907 - MIR SINE MIR -73 189 31 365 287 81 7 chr11 62077540 62077676 -88705877 - MIR SINE MIR -65 197 52 214 241 40 0 chr11 62077865 62077973 -88705580 + L2 LINE L2 3235 3312 -1 310 260 37 130 chr11 62078064 62078310 -88705243 + MLT1K LTR MaLR 291 513 -75 447 299 113 17 chr11 62078815 62078940 -88704613 + MER58A DNA MER1_type 3 151 -2269 13631 139 45 9 chr11 62078940 62081276 -88702277 - Tigger1 DNA MER2_type 0 2418 1 447 299 113 17 chr11 62081276 62081327 -88702226 + MER58A DNA MER1_type 151 196 -28 193 273 133 47 chr11 62081333 62081483 -88702070 - MIR SINE MIR -87 175 13 28 29 0 0 chr11 62081613 62081648 -88701905 + AT_rich Low_complexity Low_complexity 1 35 0 6308 137 26 16 chr11 62082095 62084056 -88699497 - L1MA2 LINE L1 -1 6303 4318 8603 163 10 9 chr11 62084076 62086719 -88696834 - L1PB1 LINE L1 0 7570 4929 3859 203 14 14 chr11 62086715 62087448 -88696105 - L1PB1 LINE L1 -6499 1066 334 * 28 29 0 0 chr11 62089870 62089905 -88693648 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr11 62092262 62092283 -88691270 + (TG)n Simple_repeat Simple_repeat 2 22 0 1356 213 176 68 chr11 62093052 62093615 -88689938 - MLT1E3 LTR MaLR 0 624 1 2522 179 56 15 chr11 62093677 62094212 -88689341 + MER68 LTR ERV1 1 557 -5 328 253 193 55 chr11 62094931 62095133 -88688420 - MIR SINE MIR -31 231 2 31 82 0 0 chr11 62095434 62095507 -88688046 + AT_rich Low_complexity Low_complexity 1 73 0 31 76 0 0 chr11 62095655 62095721 -88687832 + AT_rich Low_complexity Low_complexity 1 66 0 4104 149 50 4 chr11 62095768 62096562 -88686991 + L1MA7 LINE L1 5275 6105 -186 2807 244 70 10 chr11 62096585 62097471 -88686082 + L1PBa LINE L1 6 944 -5919 237 114 0 0 chr11 62097470 62097505 -88686048 + L1PB1 LINE L1 6050 6084 -67 * 855 149 54 0 chr11 62097539 62097707 -88685846 + L1MA7 LINE L1 6106 6282 -9 26 30 0 0 chr11 62097919 62097952 -88685601 + AT_rich Low_complexity Low_complexity 1 33 0 725 151 7 40 chr11 62098048 62098200 -88685353 + L1MA5 LINE L1 6154 6300 0 4628 120 61 6 chr11 62098209 62099048 -88684505 + Tigger3b DNA MER2_type 65 949 -282 25743 113 20 15 chr11 62099052 62104313 -88679240 - L1PA8 LINE L1 -13 6159 878 281 172 0 35 chr11 62104349 62104407 -88679146 - FLAM_A SINE Alu -1 132 77 1599 114 67 0 chr11 62104407 62104662 -88678891 + Tigger3b DNA MER2_type 956 1227 -4 311 306 70 20 chr11 62105196 62105395 -88678158 + L1M4 LINE L1 3669 3877 -2269 7001 41 1 41 chr11 62105466 62107064 -88676489 + L1PA4 LINE L1 4584 6149 -6 249 255 62 0 chr11 62107149 62107294 -88676259 + L1M4 LINE L1 4385 4538 -1608 5994 146 25 12 chr11 62107338 62108405 -88675148 - L1MC1 LINE L1 0 6333 5256 2138 157 86 9 chr11 62108405 62108825 -88674728 + LTR47A LTR ERVL 1 452 0 5994 146 25 12 chr11 62108825 62108897 -88674656 - L1MC1 LINE L1 -1077 5256 5186 328 237 191 13 chr11 62108907 62109053 -88674500 + L1M4 LINE L1 4613 4786 -1355 192 77 0 0 chr11 62109053 62109079 -88674474 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 21 0 0 0 chr11 62109154 62109175 -88674378 + AT_rich Low_complexity Low_complexity 1 21 0 313 340 0 0 chr11 62109215 62109312 -88674241 + L1M4 LINE L1 4972 5068 -1078 1649 254 39 11 chr11 62109530 62109998 -88673555 - MLT2B1 LTR ERVL -39 481 1 426 282 72 1 chr11 62110000 62110220 -88673333 + L1M4 LINE L1 5209 5442 -736 21 0 0 0 chr11 62110412 62110433 -88673120 + AT_rich Low_complexity Low_complexity 1 21 0 299 329 175 0 chr11 62110477 62110614 -88672939 - MER5A DNA MER1_type -1 188 28 255 237 28 48 chr11 62111337 62111420 -88672133 + MIR SINE MIR 32 114 -102 709 224 102 10 chr11 62111685 62111881 -88671672 + MER20 DNA MER1_type 4 217 -2 2311 97 0 19 chr11 62112342 62112650 -88670903 + AluSx SINE Alu 1 302 -10 1002 142 0 0 chr11 62112659 62112800 -88670753 + AluJb SINE Alu 21 161 -151 4326 100 310 88 chr11 62112800 62114185 -88669368 - pTR5 LTR ERV1 -2 2436 745 964 140 0 14 chr11 62114185 62114328 -88669225 + AluSg/x SINE Alu 151 291 -21 431 295 0 0 chr11 62114629 62114724 -88668829 - MER5A DNA MER1_type -85 104 10 2278 117 0 7 chr11 62115106 62115415 -88668138 + AluSx SINE Alu 1 307 -5 434 271 39 13 chr11 62116428 62116583 -88666970 - MIR SINE MIR -5 257 99 598 204 136 9 chr11 62116632 62116852 -88666701 + MER33 DNA MER1_type 15 262 -62 2117 118 3 3 chr11 62116853 62117142 -88666411 - AluSx SINE Alu -23 289 1 2030 137 7 0 chr11 62117666 62117950 -88665603 + AluSq SINE Alu 1 286 -27 1174 250 173 6 chr11 62118902 62119906 -88663647 - L1ME2 LINE L1 -219 5945 4781 445 204 99 13 chr11 62120112 62120264 -88663289 - MER3 DNA MER1_type -4 205 41 751 223 38 0 chr11 62120404 62120561 -88662992 - L1PA16 LINE L1 -9 6157 5995 225 0 0 0 chr11 62121064 62121089 -88662464 + (A)n Simple_repeat Simple_repeat 1 25 0 1964 125 8 0 chr11 62121093 62121357 -88662196 + AluSx SINE Alu 28 293 -19 2255 114 0 0 chr11 62121793 62122092 -88661461 - AluSx SINE Alu -12 300 2 295 292 42 0 chr11 62125200 62125296 -88658257 - MER70B LTR ERVL -22 556 457 2080 105 14 3 chr11 62126490 62126775 -88656778 - AluSx SINE Alu -9 303 16 4175 106 48 3 chr11 62126864 62127526 -88656027 + L1PA15 LINE L1 5466 6157 -8 295 335 77 14 chr11 62127959 62128168 -88655385 - L2 LINE L2 -707 2607 2386 2044 128 32 0 chr11 62129219 62129501 -88654052 + AluJb SINE Alu 1 291 -21 651 292 40 36 chr11 62129705 62129979 -88653574 + L2 LINE L2 2049 2323 -991 694 144 75 0 chr11 62130173 62130319 -88653234 - L1MB2 LINE L1 -3 6168 6012 4193 98 41 0 chr11 62130366 62131000 -88652553 - L1MA1 LINE L1 0 6302 5643 4700 197 87 21 chr11 62131005 62132311 -88651242 - Charlie1a DNA MER1_type -8 1447 57 324 297 0 0 chr11 62132348 62132449 -88651104 + L1MC4 LINE L1 7802 7902 -140 2332 93 0 10 chr11 62135194 62135505 -88648048 + AluSx SINE Alu 1 308 -4 1177 77 0 39 chr11 62135521 62135767 -88647786 + AluY SINE Alu 1 301 -10 2330 79 16 0 chr11 62136527 62136832 -88646721 - AluY SINE Alu -1 310 1 215 305 38 53 chr11 62137849 62137980 -88645573 - MIR SINE MIR -121 141 13 465 73 146 0 chr11 62139311 62139393 -88644160 - L1MB3 LINE L1 -3 6180 6087 410 134 7 53 chr11 62139540 62139689 -88643864 + (TCTCTG)n Simple_repeat Simple_repeat 1 142 0 630 145 0 28 chr11 62139689 62139868 -88643685 + (TC)n Simple_repeat Simple_repeat 1 174 0 22 0 0 0 chr11 62141623 62141645 -88641908 + AT_rich Low_complexity Low_complexity 1 22 0 429 254 93 88 chr11 62141815 62142008 -88641545 - MIR SINE MIR -67 195 2 11951 18 3 3 chr11 62142292 62144572 -88638981 - L1HS LINE L1 0 6155 3873 7538 15 6 0 chr11 62144576 62145440 -88638113 + L1PA3 LINE L1 5284 6152 -3 271 234 39 13 chr11 62145791 62145856 -88637697 - MER5B DNA MER1_type 0 178 109 2105 132 7 10 chr11 62145856 62146159 -88637394 + AluSx SINE Alu 1 302 -10 271 234 39 13 chr11 62146159 62146170 -88637383 - MER5B DNA MER1_type -69 109 100 39 22 0 0 chr11 62147058 62147104 -88636449 + AT_rich Low_complexity Low_complexity 1 46 0 3116 86 56 2 chr11 62147104 62147571 -88635982 + L1MA1 LINE L1 5806 6297 -5 2237 75 4 0 chr11 62147584 62147862 -88635691 + AluSc SINE Alu 1 279 -30 828 185 41 41 chr11 62147949 62148192 -88635361 + L1MA9 LINE L1 6046 6288 -24 297 280 93 0 chr11 62148296 62148403 -88635150 - MIR SINE MIR -49 213 97 2111 142 0 3 chr11 62149126 62149436 -88634117 + AluSx SINE Alu 1 309 -3 607 298 6 0 chr11 62149574 62149735 -88633818 + MIR SINE MIR 88 249 -13 194 244 0 0 chr11 62149755 62149800 -88633753 + MIR SINE MIR 74 118 -144 764 235 36 49 chr11 62150698 62150945 -88632608 + MIR SINE MIR 7 250 -12 198 0 0 0 chr11 62150989 62151011 -88632542 + (TG)n Simple_repeat Simple_repeat 1 22 0 2038 129 0 0 chr11 62151016 62151295 -88632258 - AluY SINE Alu -30 281 3 239 277 31 0 chr11 62151576 62151641 -88631912 - L2 LINE L2 -20 3252 3186 2180 109 7 0 chr11 62151819 62152102 -88631451 + AluSx SINE Alu 1 285 -27 1174 254 181 11 chr11 62153054 62154058 -88629495 - L1ME2 LINE L1 -219 5945 4781 445 204 99 13 chr11 62154264 62154416 -88629137 - MER3 DNA MER1_type -4 205 41 751 223 38 0 chr11 62154556 62154713 -88628840 - L1PA16 LINE L1 -9 6157 5995 2391 27 3 40 chr11 62155042 62155339 -88628214 - AluY SINE Alu -25 286 1 1716 100 0 0 chr11 62155491 62155731 -88627822 - L1PA6 LINE L1 0 6154 5915 202 351 121 0 chr11 62156728 62156902 -88626651 + MIR SINE MIR 68 262 0 734 298 28 5 chr11 62157687 62157905 -88625648 + MIR SINE MIR 1 223 -39 24 32 0 0 chr11 62158286 62158317 -88625236 + AT_rich Low_complexity Low_complexity 1 31 0 3213 89 19 8 chr11 62158329 62158811 -88624742 - LTR15 LTR ERV1 -6 487 1 536 391 62 26 chr11 62158811 62159233 -88624320 - L2 LINE L2 -8 3264 2828 28 0 0 0 chr11 62159275 62159303 -88624250 + AT_rich Low_complexity Low_complexity 1 28 0 7314 65 6 11 chr11 62159303 62160775 -88622778 - SVA Other Other -876 1386 1 2366 110 0 0 chr11 62160827 62161128 -88622425 + AluSx SINE Alu 3 303 -9 256 246 0 0 chr11 62161215 62161276 -88622277 - MER63 DNA MER1_type -314 748 688 2708 252 80 40 chr11 62161277 62162482 -88621071 - L1MD3 LINE L1 -795 7200 5948 4077 174 22 5 chr11 62162894 62164013 -88619540 + L1MA9 LINE L1 4910 6051 -261 1953 133 0 0 chr11 62164515 62164830 -88618723 + AluSg SINE Alu 1 315 0 269 108 0 0 chr11 62165296 62165345 -88618208 + L1M2 LINE L1 5688 5736 -432 420 180 13 100 chr11 62165967 62166117 -88617436 + MER31-int LTR ERV1 1531 1667 -3269 273 333 6 36 chr11 62166063 62166228 -88617325 + LTR57-int LTR ERVL 1351 1510 -3833 * 252 227 246 9 chr11 62167080 62167190 -88616363 + L2 LINE L2 3162 3297 -16 2531 99 33 0 chr11 62167387 62167750 -88615803 + THE1C LTR MaLR 1 375 0 540 194 39 0 chr11 62167761 62167890 -88615663 + L1MA9 LINE L1 6174 6307 -5 5017 174 44 31 chr11 62168130 62170199 -88613354 - L1MB1 LINE L1 0 5992 3882 2166 263 71 28 chr11 62170203 62170783 -88612770 - L1MB1 LINE L1 -4548 1343 1157 2357 91 0 16 chr11 62170783 62171092 -88612461 - AluY SINE Alu -7 304 1 2166 263 71 28 chr11 62171092 62172043 -88611510 - L1MB1 LINE L1 -4734 1157 249 * 2663 69 22 9 chr11 62172031 62172620 -88610933 - L1P3 LINE L1 -577 5595 4998 2318 84 16 0 chr11 62173356 62173664 -88609889 + AluSp SINE Alu 1 313 0 26 0 0 0 chr11 62173867 62173893 -88609660 + GC_rich Low_complexity Low_complexity 1 26 0 243 0 0 0 chr11 62173893 62173920 -88609633 + (T)n Simple_repeat Simple_repeat 1 27 0 363 212 82 113 chr11 62174228 62174346 -88609207 - L1MC4 LINE L1 -674 7368 7248 3147 158 21 7 chr11 62174346 62174917 -88608636 + L1PB3 LINE L1 5576 6154 0 363 212 82 113 chr11 62174917 62175090 -88608463 - L1MC4 LINE L1 -794 7248 7086 1697 165 12 39 chr11 62176015 62176370 -88607183 - MER7A DNA MER2_type -1 345 1 838 225 0 32 chr11 62176375 62176562 -88606991 - MER58A DNA MER1_type -43 181 1 483 48 0 0 chr11 62176749 62176811 -88606742 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 1667 164 10 48 chr11 62177749 62178059 -88605494 - AluJb SINE Alu -14 298 1 21 36 0 0 chr11 62178067 62178095 -88605458 + AT_rich Low_complexity Low_complexity 1 28 0 214 223 272 68 chr11 62178146 62178249 -88605304 + MER5C DNA MER1_type 1 124 -200 196 253 114 0 chr11 62178317 62178396 -88605157 + MER5C DNA MER1_type 191 278 -46 2983 142 4 0 chr11 62178690 62179169 -88604384 - L1PB1 LINE L1 -3 6148 5668 1242 181 19 30 chr11 62180320 62180745 -88602808 + L1MB5 LINE L1 5139 5559 -615 492 176 0 0 chr11 62180763 62180848 -88602705 + L1PA12 LINE L1 6 90 -7491 6142 74 35 9 chr11 62180848 62181172 -88602381 + L1PA13 LINE L1 5006 5320 -843 2022 116 4 0 chr11 62181172 62181448 -88602105 + AluSx SINE Alu 30 306 -6 6142 74 35 9 chr11 62181448 62182249 -88601304 + L1PA13 LINE L1 5320 6158 -5 2220 128 0 0 chr11 62182258 62182570 -88600983 + AluSx SINE Alu 1 312 0 850 180 42 27 chr11 62182576 62182631 -88600922 + L1MB5 LINE L1 5544 5597 -577 2452 221 16 2 chr11 62182631 62183142 -88600411 + LTR53 LTR ERVL 1 518 -1 850 180 42 27 chr11 62183142 62183339 -88600214 + L1MB5 LINE L1 5597 5843 -331 5169 159 4 23 chr11 62183341 62183538 -88600015 + MER49 LTR ERV1 1 200 -723 2254 101 3 16 chr11 62183538 62183844 -88599709 + AluSx SINE Alu 1 302 -10 5169 159 4 23 chr11 62183844 62184577 -88598976 + MER49 LTR ERV1 200 914 -9 1059 189 30 9 chr11 62184587 62184820 -88598733 + L1MB5 LINE L1 5909 6146 -28 320 69 0 0 chr11 62185936 62185986 -88597567 + MADE1 DNA Mariner 39 80 0 21 0 0 0 chr11 62186276 62186297 -88597256 + AT_rich Low_complexity Low_complexity 1 21 0 238 292 236 21 chr11 62186668 62186812 -88596741 + MIR SINE MIR 18 192 -70 251 261 31 0 chr11 62187307 62187372 -88596181 - L2 LINE L2 -20 3252 3186 2301 90 10 0 chr11 62187550 62187860 -88595693 + AluSp SINE Alu 1 313 0 2104 114 37 7 chr11 62187893 62188192 -88595361 + AluSx SINE Alu 1 308 -4 306 317 157 15 chr11 62188221 62188489 -88595064 + L2 LINE L2 3008 3313 0 23 33 0 0 chr11 62191537 62191567 -88591986 + AT_rich Low_complexity Low_complexity 1 30 0 208 321 67 30 chr11 62191643 62191777 -88591776 - MIR SINE MIR -113 149 11 2153 147 3 0 chr11 62191840 62192152 -88591401 + AluSq SINE Alu 1 313 0 465 283 58 47 chr11 62192330 62192673 -88590880 - L1ME1 LINE L1 -3 6163 5817 347 321 168 0 chr11 62193130 62193267 -88590286 + MER5A DNA MER1_type 9 168 -21 2192 123 0 3 chr11 62193267 62193568 -88589985 - AluSx SINE Alu -12 300 1 477 34 0 0 chr11 62194769 62194828 -88588725 + (TG)n Simple_repeat Simple_repeat 2 60 0 991 141 20 196 chr11 62195651 62195992 -88587561 + AluYb8 SINE Alu 1 281 -37 1833 139 0 14 chr11 62195992 62196273 -88587280 + AluSx SINE Alu 29 305 -7 2353 89 0 16 chr11 62197586 62197901 -88585652 + AluSg SINE Alu 1 310 0 413 293 43 14 chr11 62199767 62199907 -88583646 + MIR3 SINE MIR 58 201 -7 2526 52 0 3 chr11 62200032 62200341 -88583212 + AluY SINE Alu 2 309 -2 1884 78 70 0 chr11 62200454 62200711 -88582842 + AluY SINE Alu 37 311 0 216 0 0 0 chr11 62201910 62201934 -88581619 + (T)n Simple_repeat Simple_repeat 1 24 0 368 138 0 0 chr11 62202306 62202364 -88581189 + AluSg SINE Alu 1 58 -242 1753 205 61 29 chr11 62202364 62202807 -88580746 - LTR2B LTR ERV1 0 490 34 36235 72 16 12 chr11 62202828 62207901 -88575652 - Harlequin LTR ERV1 0 6896 1807 7540 84 32 18 chr11 62207887 62209031 -88574522 - Harlequin LTR ERV1 -5474 1422 263 * 2197 133 38 10 chr11 62209026 62209502 -88574051 - Harlequin LTR ERV1 -6511 385 1 * 1677 201 98 26 chr11 62209502 62209959 -88573594 - LTR2B LTR ERV1 0 490 1 1735 111 0 44 chr11 62209959 62210211 -88573342 + AluSg SINE Alu 55 295 -15 438 330 47 31 chr11 62210214 62210472 -88573081 - MIR SINE MIR 0 262 1 359 115 0 16 chr11 62210855 62210916 -88572637 + MLT1B LTR MaLR 1 60 -330 370 187 0 0 chr11 62211016 62211091 -88572462 + Tigger7 DNA MER2_type 47 121 -584 2411 263 46 35 chr11 62211096 62211877 -88571676 - L1M4c LINE L1 -1560 4822 4026 837 193 94 75 chr11 62211877 62212208 -88571345 + MER44D DNA MER2_type 2 608 -1 2411 263 46 35 chr11 62212208 62212500 -88571053 - L1M4c LINE L1 -2356 4026 3738 231 36 0 0 chr11 62212500 62212528 -88571025 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1976 279 71 23 chr11 62212559 62213757 -88569796 - L1M4c LINE L1 -3884 2679 1286 918 154 0 0 chr11 62213837 62213973 -88569580 - AluJb SINE Alu -176 136 1 230 0 0 32 chr11 62214310 62214341 -88569212 + (TTTTTA)n Simple_repeat Simple_repeat 2 31 0 7359 30 0 0 chr11 62214358 62215989 -88567564 - L1PA3 LINE L1 0 6155 4548 8979 26 5 0 chr11 62215989 62217100 -88566453 + L1P LINE L1 3475 4590 -1556 513 254 99 0 chr11 62217473 62217615 -88565938 - MLT1D LTR MaLR -22 632 477 1030 198 51 13 chr11 62217683 62217920 -88565633 + MSTB1 LTR MaLR 187 432 0 890 289 66 60 chr11 62217921 62218574 -88564979 - L1M4 LINE L1 -1738 4408 3752 698 231 75 107 chr11 62218653 62219026 -88564527 - MLT1D LTR MaLR -144 361 1 2968 212 33 18 chr11 62219712 62220494 -88563059 + L1MB1 LINE L1 5372 6165 -3 263 122 27 27 chr11 62220495 62220569 -88562984 + (TA)n Simple_repeat Simple_repeat 2 75 0 401 39 0 0 chr11 62222484 62222536 -88561017 + MADE1 DNA Mariner 29 80 0 27 87 0 0 chr11 62223033 62223102 -88560451 + AT_rich Low_complexity Low_complexity 1 69 0 25 31 0 0 chr11 62223915 62223947 -88559606 + AT_rich Low_complexity Low_complexity 1 32 0 198 103 0 0 chr11 62224339 62224368 -88559185 + (T)n Simple_repeat Simple_repeat 1 29 0 234 207 0 0 chr11 62224554 62224612 -88558941 + (TA)n Simple_repeat Simple_repeat 2 59 0 303 272 0 0 chr11 62225040 62225143 -88558410 + (TATG)n Simple_repeat Simple_repeat 2 104 0 1536 91 0 14 chr11 62225787 62225997 -88557556 + AluY SINE Alu 103 309 -2 4998 148 8 12 chr11 62226006 62226954 -88556599 + L1PA16 LINE L1 5193 6137 -29 1223 216 51 89 chr11 62227279 62227793 -88555760 + MLT1D LTR MaLR 12 505 0 351 352 16 40 chr11 62227810 62228063 -88555490 + L1M4 LINE L1 3693 3939 -2207 3400 191 5 17 chr11 62228092 62228865 -88554688 - L1 LINE L1 -1584 4562 3799 21 0 0 0 chr11 62228946 62228967 -88554586 + AT_rich Low_complexity Low_complexity 1 21 0 2392 74 0 17 chr11 62228977 62229275 -88554278 + AluY SINE Alu 3 295 -16 6465 177 7 5 chr11 62229275 62230676 -88552877 - HERVL18 LTR ERVL -4575 1472 1 1162 236 144 3 chr11 62230682 62230995 -88552558 - LTR18A LTR ERVL 0 357 1 1644 186 16 31 chr11 62231324 62231641 -88551912 - AluJb SINE Alu 0 312 1 312 70 0 0 chr11 62232300 62232343 -88551210 + (CA)n Simple_repeat Simple_repeat 1 43 0 268 356 38 30 chr11 62234107 62234239 -88549314 + MIR3 SINE MIR 35 167 -41 393 313 45 6 chr11 62234864 62235040 -88548513 + MIR3 SINE MIR 4 141 -67 195 170 0 0 chr11 62235126 62235173 -88548380 + T-rich Low_complexity Low_complexity 1 47 0 1939 146 3 10 chr11 62235745 62236053 -88547500 - AluSg1 SINE Alu -3 306 1 382 91 212 0 chr11 62237471 62237537 -88546016 + MADE1 DNA Mariner 1 80 0 229 343 42 78 chr11 62237742 62237908 -88545645 + MIR3 SINE MIR 19 178 -30 525 231 148 0 chr11 62238404 62238573 -88544980 - MER3 DNA MER1_type -4 205 12 428 211 77 0 chr11 62239125 62239229 -88544324 + L1MC3 LINE L1 7429 7540 -245 1417 202 38 38 chr11 62240092 62240513 -88543040 + L1MC3 LINE L1 7198 7618 -167 1651 92 0 0 chr11 62241919 62242148 -88541405 - L1PA13 LINE L1 -1 6162 5934 377 154 26 0 chr11 62242148 62242221 -88541332 + L1PA13 LINE L1 5858 5935 -202 227 371 107 11 chr11 62244658 62244836 -88538717 + MIR SINE MIR 19 213 -49 237 245 0 43 chr11 62244867 62244961 -88538592 + (TAA)n Simple_repeat Simple_repeat 1 90 0 24 53 0 0 chr11 62245015 62245053 -88538500 + AT_rich Low_complexity Low_complexity 1 38 0 181 300 0 0 chr11 62246038 62246088 -88537465 + MIR SINE MIR 174 223 -39 687 195 74 70 chr11 62246333 62246548 -88537005 - MER20 DNA MER1_type -3 216 1 1052 165 38 0 chr11 62246651 62246863 -88536690 - L1MB2 LINE L1 -2 6169 5950 1715 184 75 34 chr11 62246897 62247336 -88536217 + LTR2B LTR ERV1 34 490 0 48992 65 25 16 chr11 62247336 62254167 -88529386 + Harlequin LTR ERV1 1 6895 -1 1561 195 91 35 chr11 62254189 62254620 -88528933 + LTR2B LTR ERV1 34 488 -2 1238 166 20 74 chr11 62254622 62254918 -88528635 - L1MB2 LINE L1 -226 5945 5666 666 288 4 10 chr11 62254914 62255145 -88528408 - L1M3c LINE L1 -4996 2041 1813 * 2896 129 10 10 chr11 62255413 62255900 -88527653 - LTR15 LTR ERV1 -6 487 1 533 261 13 20 chr11 62255983 62256165 -88527388 - L1M3c LINE L1 -5737 1290 3 367 269 29 0 chr11 62256805 62256976 -88526577 + (TA)n Simple_repeat Simple_repeat 2 177 0 405 39 0 0 chr11 62257011 62257062 -88526491 + (TG)n Simple_repeat Simple_repeat 2 52 0 342 67 0 0 chr11 62257061 62257106 -88526447 + (TA)n Simple_repeat Simple_repeat 1 45 0 * 26 30 0 0 chr11 62257915 62257948 -88525605 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr11 62258254 62258284 -88525269 + AT_rich Low_complexity Low_complexity 1 30 0 665 236 0 0 chr11 62258388 62258515 -88525038 + FRAM SINE Alu 1 127 -49 559 379 68 25 chr11 62258548 62259033 -88524520 + L1MEc LINE L1 100 605 -5791 2031 132 132 11 chr11 62259140 62259520 -88524033 + MSTA LTR MaLR 3 428 0 1212 289 87 20 chr11 62259543 62260541 -88523012 + L1MEc LINE L1 679 1743 -4653 747 238 16 20 chr11 62260533 62260785 -88522768 + L1M4 LINE L1 4456 4706 -1440 * 22 35 0 0 chr11 62261364 62261393 -88522160 + AT_rich Low_complexity Low_complexity 1 29 0 276 53 0 0 chr11 62261706 62261744 -88521809 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6301 68 6 54 chr11 62261744 62262725 -88520828 - SVA Other Other -23 1363 430 3111 92 32 78 chr11 62262736 62263302 -88520251 - SVA Other Other -520 866 327 22 0 0 0 chr11 62264610 62264632 -88518921 + AT_rich Low_complexity Low_complexity 1 22 0 355 239 178 37 chr11 62264709 62264872 -88518681 - MIR SINE MIR -23 239 54 1808 178 0 7 chr11 62264898 62265207 -88518346 + AluJb SINE Alu 1 307 -5 351 345 0 0 chr11 62265577 62265687 -88517866 - L2 LINE L2 -475 2839 2730 475 335 47 35 chr11 62266904 62267161 -88516392 - MIR SINE MIR -2 260 1 1242 109 0 0 chr11 62267888 62268239 -88515314 + (TA)n Simple_repeat Simple_repeat 1 351 0 243 88 0 0 chr11 62268374 62268408 -88515145 + (TA)n Simple_repeat Simple_repeat 1 34 0 306 270 114 3 chr11 62269968 62270161 -88513392 + MLT1E1 LTR MaLR 1 263 -391 726 276 46 0 chr11 62270219 62270458 -88513095 + MLT1E1 LTR MaLR 405 654 0 263 288 45 45 chr11 62270657 62270768 -88512785 + MIR3 SINE MIR 5 115 -93 227 264 0 0 chr11 62270954 62271007 -88512546 + MLT1D LTR MaLR 5 57 -448 1202 218 61 85 chr11 62271058 62271503 -88512050 + MLT1D LTR MaLR 72 505 0 375 321 0 0 chr11 62271824 62271930 -88511623 - L2 LINE L2 -27 3286 3181 708 254 28 0 chr11 62271938 62272119 -88511434 - MER58A DNA MER1_type -8 216 31 341 238 0 0 chr11 62272357 62272437 -88511116 - MER116 DNA Mariner 0 80 1 618 237 7 22 chr11 62272817 62272952 -88510601 - MER45A DNA AcHobo -44 134 2 242 333 27 18 chr11 62273047 62273158 -88510395 + MIR SINE MIR 2 113 -149 1986 102 0 72 chr11 62273524 62273856 -88509697 + AluSq SINE Alu 1 310 0 2487 67 0 0 chr11 62274205 62274504 -88509049 - AluY SINE Alu -12 299 1 2240 100 7 7 chr11 62275801 62276101 -88507452 - AluSx SINE Alu -12 300 1 32 43 0 0 chr11 62277292 62277338 -88506215 + AT_rich Low_complexity Low_complexity 1 46 0 583 288 99 30 chr11 62278248 62278481 -88505072 + MIR SINE MIR 14 262 0 237 61 41 20 chr11 62278491 62278540 -88505013 + (TA)n Simple_repeat Simple_repeat 2 51 0 1168 148 83 5 chr11 62278575 62278791 -88504762 + MLT2A2 LTR ERVL 1 233 -220 503 45 0 0 chr11 62278789 62278856 -88504697 + MLT2A2 LTR ERVL 382 448 -5 * 344 45 0 0 chr11 62278853 62278897 -88504656 + MLT2A2 LTR ERVL 410 453 0 * 418 104 0 0 chr11 62278897 62278964 -88504589 + HERVL-A2-A2 LTR ERVL 1 67 -5587 * 37659 96 6 7 chr11 62278956 62279440 -88504113 + HERVL-A2-A2 LTR ERVL 296 779 -4875 8441 62 3 5 chr11 62279440 62280513 -88503040 + MER11C LTR ERVK 1 1071 0 37659 96 6 7 chr11 62280513 62285394 -88498159 + HERVL-A2-A2 LTR ERVL 779 5654 0 3255 106 4 9 chr11 62285396 62285849 -88497704 + MLT2A2 LTR ERVL 3 453 0 21 0 0 0 chr11 62286136 62286157 -88497396 + AT_rich Low_complexity Low_complexity 1 21 0 465 316 48 0 chr11 62286267 62286473 -88497080 + MLT1L LTR MaLR 20 235 -380 256 300 60 27 chr11 62286507 62286657 -88496896 + MLT1L LTR MaLR 458 612 -3 202 316 13 0 chr11 62286694 62286770 -88496783 - MIR SINE MIR -108 154 78 6474 230 29 25 chr11 62287517 62289165 -88494388 + L1MC1 LINE L1 2953 4620 -1713 2308 77 0 0 chr11 62289165 62289450 -88494103 + AluY SINE Alu 1 285 -26 6474 230 29 25 chr11 62289450 62290829 -88492724 + L1MC1 LINE L1 4620 5992 -341 1408 194 14 0 chr11 62290832 62291115 -88492438 + L1MC1 LINE L1 6047 6333 0 298 148 68 34 chr11 62291118 62291206 -88492347 - Charlie1 DNA MER1_type -143 2618 2528 25 0 0 0 chr11 62291599 62291624 -88491929 + AT_rich Low_complexity Low_complexity 1 25 0 31 96 0 0 chr11 62293143 62293237 -88490316 + AT_rich Low_complexity Low_complexity 1 94 0 338 287 54 0 chr11 62293964 62294131 -88489422 + L1MEd LINE L1 964 1139 -4980 * 2584 271 42 16 chr11 62294128 62294180 -88489373 + L1M2a LINE L1 400 449 -7117 342 0 0 0 chr11 62294180 62294218 -88489335 + (CA)n Simple_repeat Simple_repeat 2 39 0 2584 271 42 16 chr11 62294218 62295496 -88488057 + L1M2a LINE L1 449 1983 -5583 2498 265 114 8 chr11 62295489 62296244 -88487309 + MSTD-int LTR MaLR 901 1735 0 * 891 258 75 29 chr11 62296244 62296550 -88487003 + MSTD LTR MaLR 1 320 -76 749 226 92 22 chr11 62296563 62296972 -88486581 + L1M2a LINE L1 3394 3826 -3739 1506 172 104 0 chr11 62297027 62297277 -88486276 - AluJb SINE Alu -25 287 12 2156 222 37 52 chr11 62297794 62298519 -88485034 - L1M4 LINE L1 -1121 5025 4312 5093 102 12 25 chr11 62298533 62298629 -88484924 - L1PA13 LINE L1 -8 6155 6059 2293 99 3 10 chr11 62298629 62298931 -88484622 - AluSx SINE Alu -12 300 1 5093 102 12 25 chr11 62298931 62299666 -88483887 - L1PA13 LINE L1 -104 6059 5335 226 235 29 0 chr11 62299661 62299729 -88483824 - L1M4 LINE L1 -1822 4324 4255 * 1739 245 68 38 chr11 62299746 62300649 -88482904 - L1M4 LINE L1 -2163 3983 3054 778 193 6 6 chr11 62300794 62300975 -88482578 + L1M4 LINE L1 5592 5772 -406 450 301 148 31 chr11 62301008 62301237 -88482316 + MIR SINE MIR 7 262 0 2246 67 0 3 chr11 62302893 62303219 -88480334 - AluY SINE Alu 0 325 1 343 339 35 17 chr11 62304064 62304179 -88479374 + MIR SINE MIR 20 136 -72 260 319 123 0 chr11 62305650 62305788 -88477765 - L2 LINE L2 -1 3312 3158 243 356 0 45 chr11 62305894 62306026 -88477527 - L2 LINE L2 -177 3095 2970 * 297 238 133 5 chr11 62306024 62306132 -88477421 - MIR SINE MIR -63 145 34 371 334 77 33 chr11 62306185 62306637 -88476916 - L2 LINE L2 -604 2710 2239 24 0 0 0 chr11 62307139 62307163 -88476390 + AT_rich Low_complexity Low_complexity 1 24 0 422 215 32 38 chr11 62308128 62308286 -88475267 + L1M4 LINE L1 2343 2499 -3647 1829 207 18 9 chr11 62309528 62309968 -88473585 + L1PA13 LINE L1 1532 1975 -4812 565 130 10 10 chr11 62310022 62310122 -88473431 - L1MA10 LINE L1 -13 6321 6222 864 268 22 46 chr11 62310146 62310646 -88472907 - L1MC5 LINE L1 -48 7913 7426 12444 88 36 2 chr11 62310685 62313253 -88470300 - L1PA7 LINE L1 -14 6140 3511 299 191 59 0 chr11 62313536 62313604 -88469949 - MER91B DNA MER1_type -39 151 80 256 283 123 65 chr11 62313991 62314129 -88469424 - MIR SINE MIR -26 236 91 21 0 0 0 chr11 62314449 62314470 -88469083 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 62314902 62314923 -88468630 + AT_rich Low_complexity Low_complexity 1 21 0 3570 197 66 71 chr11 62315872 62316988 -88466565 + LTR28 LTR ERV1 1 634 -2 207 219 0 0 chr11 62317212 62317253 -88466300 + A-rich Low_complexity Low_complexity 1 41 0 2517 141 20 45 chr11 62317940 62318549 -88465004 + MER4B LTR ERV1 1 766 0 1876 163 3 0 chr11 62319056 62319397 -88464156 - AluSx SINE Alu 0 342 1 2610 173 43 10 chr11 62319582 62320161 -88463392 - L1MC3 LINE L1 -7 7778 7181 234 218 0 0 chr11 62320161 62320216 -88463337 - MLT1F1 LTR MaLR -450 117 63 23 0 0 0 chr11 62321295 62321318 -88462235 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 62321361 62321382 -88462171 + AT_rich Low_complexity Low_complexity 1 21 0 309 333 48 51 chr11 62322017 62322329 -88461224 + MLT1K LTR MaLR 102 412 -176 1075 175 40 50 chr11 62322832 62323185 -88460368 + LTR10B LTR ERV1 255 505 0 213 303 156 18 chr11 62323741 62323850 -88459703 - L2 LINE L2 -5 3267 3144 230 345 65 76 chr11 62323972 62324247 -88459306 - L2 LINE L2 -346 2968 2697 510 274 48 39 chr11 62326135 62326365 -88457188 + L3 LINE CR1 682 913 -664 542 331 0 0 chr11 62326440 62326618 -88456935 - MER5B DNA MER1_type 0 178 1 805 206 100 0 chr11 62326628 62326798 -88456755 - MER5A DNA MER1_type -2 187 1 188 146 18 91 chr11 62326798 62326825 -88456728 + L3 LINE CR1 1112 1134 -443 231 167 0 0 chr11 62327396 62327438 -88456115 + (CA)n Simple_repeat Simple_repeat 1 42 0 222 316 213 0 chr11 62327505 62327641 -88455912 - MIR3 SINE MIR -3 205 41 187 351 21 21 chr11 62327815 62327909 -88455644 + MIR SINE MIR 49 142 -66 809 270 84 32 chr11 62329137 62329481 -88454072 - L2 LINE L2 -367 2947 2586 209 384 23 12 chr11 62329955 62330041 -88453512 - MIR SINE MIR -106 102 16 273 105 0 0 chr11 62330329 62330367 -88453186 + L1PA15 LINE L1 6066 6103 -62 930 263 61 33 chr11 62330432 62330793 -88452760 + L2 LINE L2 2585 2955 -359 13145 201 26 7 chr11 62330856 62333228 -88450325 - L1PA15 LINE L1 -65 6100 3624 342 0 0 0 chr11 62333228 62333266 -88450287 + (TG)n Simple_repeat Simple_repeat 2 39 0 13145 201 26 7 chr11 62333266 62334835 -88448718 - L1PA15 LINE L1 -2541 3624 2086 3087 231 38 31 chr11 62334842 62336486 -88447067 + L1MCb LINE L1 115 1735 -4829 247 331 183 18 chr11 62336829 62336998 -88446555 - MIR3 SINE MIR -6 202 6 403 319 66 8 chr11 62338553 62338794 -88444759 + HAL1 LINE L1 32 286 -2221 2130 119 36 28 chr11 62338851 62339212 -88444341 - THE1B LTR MaLR 0 364 1 821 248 90 52 chr11 62339267 62339803 -88443750 + HAL1 LINE L1 1846 2401 -106 202 310 62 18 chr11 62339827 62339940 -88443613 + L2 LINE L2 1892 2009 -1305 539 231 136 7 chr11 62339955 62340102 -88443451 - MIR SINE MIR -49 213 48 864 131 0 0 chr11 62340107 62340229 -88443324 + AluSq/x SINE Alu 1 122 -190 232 200 0 17 chr11 62340231 62340291 -88443262 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 341 73 93 13 chr11 62340291 62340441 -88443112 + (TA)n Simple_repeat Simple_repeat 2 163 0 385 338 129 23 chr11 62340585 62341150 -88442403 + L2 LINE L2 1994 2618 -696 272 255 134 0 chr11 62341282 62341389 -88442164 + MIR SINE MIR 34 164 -66 * 292 333 0 60 chr11 62341382 62341532 -88442021 + L2 LINE L2 2967 3107 -165 267 369 94 20 chr11 62341616 62341765 -88441788 + L2 LINE L2 3112 3271 -1 536 65 26 13 chr11 62342049 62342126 -88441427 - MADE1 DNA Mariner -2 78 1 266 333 37 0 chr11 62343274 62343355 -88440198 - MIR SINE MIR -72 136 53 1474 165 100 0 chr11 62344999 62345260 -88438293 - AluJb SINE Alu -25 287 1 378 189 0 15 chr11 62345878 62345971 -88437582 - L1M4 LINE L1 -440 5744 5654 519 274 152 39 chr11 62345976 62346206 -88437347 + MIR SINE MIR 7 262 0 1668 139 101 0 chr11 62347119 62347377 -88436176 + AluJb SINE Alu 5 288 -24 5468 163 20 27 chr11 62347388 62348466 -88435087 - MER11C LTR ERVK 0 1071 1 751 252 71 44 chr11 62348514 62349028 -88434525 - L1 LINE L1 -3738 3429 2898 1308 257 68 16 chr11 62349079 62349445 -88434108 - MSTD LTR MaLR -11 385 1 2822 268 103 4 chr11 62349457 62350201 -88433352 - MSTD-int LTR MaLR -12 1723 906 2701 277 44 13 chr11 62350200 62351468 -88432085 - L1 LINE L1 -5583 1585 53 * 429 20 0 0 chr11 62351468 62351518 -88432035 + (TG)n Simple_repeat Simple_repeat 2 51 0 2701 277 44 13 chr11 62351518 62351566 -88431987 - L1 LINE L1 -7115 53 8 466 298 29 0 chr11 62351568 62351739 -88431814 - L1MEd LINE L1 -4980 1139 964 32 113 0 0 chr11 62352463 62352614 -88430939 + AT_rich Low_complexity Low_complexity 1 151 0 2296 102 0 0 chr11 62353411 62353715 -88429838 + AluSc SINE Alu 1 304 -5 302 143 36 36 chr11 62354881 62354939 -88428614 + Charlie1 DNA MER1_type 2535 2595 -166 2012 109 0 7 chr11 62354939 62355215 -88428338 - AluSg SINE Alu -2 308 35 302 143 36 36 chr11 62355215 62355240 -88428313 + Charlie1 DNA MER1_type 2594 2618 -143 1214 220 18 0 chr11 62355243 62355525 -88428028 - L1MC1 LINE L1 0 6333 6047 7666 221 39 16 chr11 62355528 62356786 -88426767 - L1MC1 LINE L1 -341 5992 4764 531 0 0 0 chr11 62356786 62356845 -88426708 + (TTC)n Simple_repeat Simple_repeat 3 61 0 7666 221 39 16 chr11 62356845 62358557 -88424996 - L1MC1 LINE L1 -1569 4764 2953 316 298 53 13 chr11 62359422 62359573 -88423980 - MLT1L LTR MaLR 0 615 459 618 239 76 11 chr11 62359632 62359816 -88423737 - MLT1L LTR MaLR -404 211 16 52 69 0 0 chr11 62359902 62360003 -88423550 + AT_rich Low_complexity Low_complexity 1 101 0 407 319 115 22 chr11 62360330 62360556 -88422997 - MIR SINE MIR -3 259 13 2099 78 39 26 chr11 62361346 62361653 -88421900 - AluY SINE Alu 0 311 1 2716 29 0 0 chr11 62362227 62362535 -88421018 + AluY SINE Alu 1 308 -3 2325 105 0 10 chr11 62363656 62363970 -88419583 - AluSp SINE Alu 0 313 3 183 304 148 17 chr11 62364297 62364412 -88419141 - L2 LINE L2 -661 2653 2524 2214 105 0 0 chr11 62365317 62365613 -88417940 + AluSx SINE Alu 1 296 -16 638 236 8 24 chr11 62366163 62366290 -88417263 + MER45A DNA AcHobo 2 126 -52 846 195 15 70 chr11 62366507 62366707 -88416846 + MER58A DNA MER1_type 35 223 -1 380 294 10 0 chr11 62366708 62366810 -88416743 + L2 LINE L2 3181 3283 -30 1477 239 60 29 chr11 62367134 62367548 -88416005 - MLT1D LTR MaLR 0 505 79 252 306 153 18 chr11 62367798 62367909 -88415644 - MIR SINE MIR -64 144 19 721 334 29 63 chr11 62368133 62368785 -88414768 - L1MEc LINE L1 -5722 674 45 908 115 0 0 chr11 62369309 62369431 -88414122 - AluSg SINE Alu -188 122 1 2725 204 17 8 chr11 62369431 62370035 -88413518 - L1 LINE L1 -2960 3186 2578 703 161 81 58 chr11 62370040 62370136 -88413417 - MER30 DNA MER1_type 0 230 127 1817 131 10 33 chr11 62370136 62370441 -88413112 + AluSg SINE Alu 1 298 -12 703 161 81 58 chr11 62370441 62370518 -88413035 - MER30 DNA MER1_type -103 127 53 695 96 0 0 chr11 62370631 62370725 -88412828 + THE1C LTR MaLR 282 375 0 4798 148 57 7 chr11 62370725 62371887 -88411666 + L1MA5 LINE L1 4930 6150 -150 574 260 9 0 chr11 62372569 62372732 -88410821 - L1MA10 LINE L1 -2 6319 6017 274 163 3 0 chr11 62372727 62372792 -88410761 - L1ME1 LINE L1 -204 5960 5892 * 1002 157 81 20 chr11 62372944 62373141 -88410412 - MLT2C1 LTR ERVL -65 332 124 244 174 0 0 chr11 62373141 62373187 -88410366 - L1MB7 LINE L1 -98 6086 6041 664 197 0 27 chr11 62373309 62373456 -88410097 - L1PA8A LINE L1 0 6131 5989 302 298 84 0 chr11 62373564 62373695 -88409858 + L1ME LINE L1 5302 5443 -719 6762 76 0 0 chr11 62373699 62374748 -88408805 - L1PA6 LINE L1 -8 6146 5099 235 200 82 12 chr11 62374850 62374935 -88408618 + L1ME4a LINE L1 6026 6116 -5 186 424 33 0 chr11 62375419 62375511 -88408042 - L2 LINE L2 -19 3253 3159 185 330 61 43 chr11 62375644 62375759 -88407794 - L2 LINE L2 -206 3066 2950 203 315 30 86 chr11 62376022 62376219 -88407334 + L2 LINE L2 2329 2514 -800 619 333 93 18 chr11 62376324 62376723 -88406830 - L2 LINE L2 -1019 2295 1867 806 250 31 27 chr11 62376825 62377081 -88406472 - L1ME2 LINE L1 -47 6117 5861 596 167 9 9 chr11 62377181 62377289 -88406264 + LTR24C LTR ERV1 528 635 0 2248 143 22 6 chr11 62377683 62378041 -88405512 + THE1B LTR MaLR 1 364 0 10038 110 30 36 chr11 62378041 62379631 -88403922 + THE1B-int LTR MaLR 1 1580 0 405 97 97 0 chr11 62379631 62379693 -88403860 + THE1B LTR MaLR 1 68 -307 482 219 70 0 chr11 62379705 62379833 -88403720 + L1MB4 LINE L1 6010 6146 -34 828 228 65 14 chr11 62379937 62380292 -88403261 + L1M4 LINE L1 2974 3346 -2800 2091 305 42 37 chr11 62380294 62381187 -88402366 + L1M4 LINE L1 1 1370 -5839 * 2761 248 30 13 chr11 62381165 62382061 -88401492 + L1M4 LINE L1 1609 2558 -4651 5278 164 28 15 chr11 62382061 62383358 -88400195 + L1MA5 LINE L1 4904 6208 -92 2627 259 42 8 chr11 62383358 62384195 -88399358 + L1M4 LINE L1 4460 5324 -1884 1491 122 33 19 chr11 62384198 62384468 -88399085 - HSMAR2 DNA Mariner -1 1301 1028 3424 146 61 8 chr11 62384468 62385076 -88398477 - HSMAR2 DNA Mariner -661 641 2 512 192 6 85 chr11 62385081 62385258 -88398295 + L1M4 LINE L1 5339 5501 -1707 2090 113 7 0 chr11 62386750 62387041 -88396512 - AluSx SINE Alu -19 293 1 23 54 0 0 chr11 62387815 62387852 -88395701 + AT_rich Low_complexity Low_complexity 1 37 0 273 305 21 0 chr11 62388287 62388382 -88395171 + MLT1J2 LTR MaLR 67 163 -287 21 0 0 0 chr11 62388688 62388709 -88394844 + AT_rich Low_complexity Low_complexity 1 21 0 225 235 29 0 chr11 62389316 62389384 -88394169 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 270 338 41 48 chr11 62389596 62389741 -88393812 + MLT1J LTR MaLR 150 293 -218 1319 229 11 0 chr11 62390761 62391023 -88392530 - AluJo SINE Alu -45 267 3 1915 158 0 0 chr11 62391068 62391373 -88392180 - AluSx SINE Alu 0 305 1 206 98 49 0 chr11 62392003 62392044 -88391509 + A-rich Low_complexity Low_complexity 2 44 0 1224 115 0 0 chr11 62392146 62392329 -88391224 + L1PA13 LINE L1 5979 6161 -2 566 186 57 8 chr11 62392678 62392802 -88390751 - L1ME LINE L1 -722 5444 5315 351 259 37 0 chr11 62392806 62392914 -88390639 - L1MD2 LINE L1 -17 6342 6231 270 271 83 10 chr11 62392933 62393029 -88390524 - L1MD2 LINE L1 -216 6143 6041 262 309 66 7 chr11 62393052 62393204 -88390349 + L1M4 LINE L1 5755 5915 -1293 2437 54 0 3 chr11 62393206 62393504 -88390049 - AluY SINE Alu -13 298 2 417 293 43 14 chr11 62393629 62393769 -88389784 - MIR3 SINE MIR -7 201 58 491 234 16 49 chr11 62395768 62395952 -88387601 - L1MA9 LINE L1 -24 6288 6111 25 31 0 0 chr11 62396052 62396084 -88387469 + AT_rich Low_complexity Low_complexity 1 32 0 2163 83 7 0 chr11 62396098 62396375 -88387178 - AluSc SINE Alu -30 279 1 3127 86 56 2 chr11 62396388 62396855 -88386698 - L1MA1 LINE L1 -5 6297 5806 39 22 0 0 chr11 62396855 62396901 -88386652 + AT_rich Low_complexity Low_complexity 1 46 0 270 234 39 13 chr11 62397794 62397805 -88385748 + MER5B DNA MER1_type 100 109 -69 2039 134 7 10 chr11 62397805 62398104 -88385449 - AluSx SINE Alu -14 298 1 270 234 39 13 chr11 62398104 62398169 -88385384 + MER5B DNA MER1_type 109 178 0 1021 60 8 0 chr11 62398516 62398650 -88384903 - L1PA3 LINE L1 0 6155 6021 1215 73 0 39 chr11 62398680 62398926 -88384627 + AluY SINE Alu 1 301 -10 2324 79 16 0 chr11 62399686 62399991 -88383562 - AluY SINE Alu -1 310 1 210 305 38 53 chr11 62401008 62401139 -88382414 - MIR SINE MIR -121 141 13 473 73 146 0 chr11 62402478 62402560 -88380993 - L1MB3 LINE L1 -3 6180 6087 410 134 7 53 chr11 62402707 62402856 -88380697 + (TCTCTG)n Simple_repeat Simple_repeat 1 142 0 630 145 0 28 chr11 62402856 62403035 -88380518 + (TC)n Simple_repeat Simple_repeat 1 174 0 22 0 0 0 chr11 62404792 62404814 -88378739 + AT_rich Low_complexity Low_complexity 1 22 0 436 254 93 88 chr11 62404984 62405177 -88378376 - MIR SINE MIR -67 195 2 8090 7 2 0 chr11 62405460 62406591 -88376962 - L1HS LINE L1 0 6155 5021 345 264 44 44 chr11 62456592 62456751 -88326802 + L1ME3A LINE L1 5975 6133 -37 276 155 14 28 chr11 62456757 62456828 -88326725 + LTR16A1 LTR ERVL 388 457 0 532 130 30 0 chr11 62457004 62457104 -88326449 + GA-rich Low_complexity Low_complexity 4 106 0 1096 212 95 6 chr11 62457104 62457429 -88326124 + LTR65 LTR ERV1 296 649 -20 222 91 0 0 chr11 62457475 62457508 -88326045 + (CA)n Simple_repeat Simple_repeat 2 34 0 570 250 23 0 chr11 62457548 62457720 -88325833 + L1M4c LINE L1 4 179 -6989 4767 270 26 16 chr11 62457776 62459858 -88323695 + L1M4c LINE L1 699 2817 -4351 6007 108 2 9 chr11 62459866 62461075 -88322478 - L1PA10 LINE L1 -3 6165 4955 3778 145 3 3 chr11 62461075 62461745 -88321808 + L1PA10 LINE L1 4257 4926 -1220 1386 172 41 34 chr11 62461745 62462013 -88321540 - THE1B LTR MaLR -92 272 3 5131 264 75 19 chr11 62462019 62462114 -88321439 + L1M4c LINE L1 2925 3013 -4154 3664 72 131 2 chr11 62462114 62462655 -88320898 + L1PA8 LINE L1 5561 6171 -1 5131 264 75 19 chr11 62462655 62464164 -88319389 + L1M4c LINE L1 3013 4729 -2438 360 0 0 0 chr11 62464164 62464204 -88319349 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 5131 264 75 19 chr11 62464204 62465102 -88318451 + L1M4c LINE L1 4729 5575 -1592 1401 207 128 93 chr11 62465191 62465911 -88317642 - LTR1B LTR ERV1 -81 745 1 585 208 127 12 chr11 62465911 62466084 -88317469 + L1M4c LINE L1 5579 5771 -1396 321 377 35 39 chr11 62467655 62467915 -88315638 + MIR SINE MIR 3 261 -1 182 156 22 0 chr11 62467915 62467960 -88315593 + (TA)n Simple_repeat Simple_repeat 2 47 0 204 351 0 43 chr11 62468075 62468169 -88315384 - L2 LINE L2 -69 3203 3114 2585 25 0 28 chr11 62468606 62468926 -88314627 - AluY SINE Alu 0 311 1 349 386 24 14 chr11 62469065 62469272 -88314281 + MLT1K LTR MaLR 24 232 -356 394 318 9 9 chr11 62469598 62469708 -88313845 + L2 LINE L2 2730 2839 -475 1141 152 99 0 chr11 62470078 62470269 -88313284 - AluJb SINE Alu -13 299 90 23 54 0 0 chr11 62470880 62470917 -88312636 + AT_rich Low_complexity Low_complexity 1 37 0 640 264 20 24 chr11 62471445 62471695 -88311858 - L1M4 LINE L1 -1393 4753 4505 1418 136 5 23 chr11 62471696 62471947 -88311606 - AluSg/x SINE Alu 0 320 74 250 337 87 14 chr11 62471990 62472278 -88311275 - L1MEc LINE L1 -5994 402 94 765 245 0 0 chr11 62472290 62472441 -88311112 - FRAM SINE Alu -15 151 1 2178 110 3 3 chr11 62472530 62472821 -88310732 + AluSx SINE Alu 1 291 -21 26 30 0 0 chr11 62472900 62472933 -88310620 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr11 62473034 62473059 -88310494 + AT_rich Low_complexity Low_complexity 1 25 0 354 257 29 7 chr11 62474024 62474160 -88309393 + (TA)n Simple_repeat Simple_repeat 1 139 0 768 226 17 6 chr11 62475127 62475304 -88308249 + MLT1A1 LTR MaLR 185 363 -2 2298 247 50 20 chr11 62475307 62475566 -88307987 + MLT1A1-int LTR MaLR 3 253 -1468 2206 130 0 7 chr11 62475566 62475874 -88307679 + AluSx SINE Alu 1 306 -6 2298 247 50 20 chr11 62475874 62476308 -88307245 + MLT1A1-int LTR MaLR 253 763 -958 1390 201 58 84 chr11 62476307 62476347 -88307206 + L1MA9 LINE L1 5741 5780 -532 * 288 0 0 0 chr11 62476347 62476379 -88307174 + (CA)n Simple_repeat Simple_repeat 2 33 0 1390 201 58 84 chr11 62476379 62476819 -88306734 + L1MA9 LINE L1 5780 6230 -82 6938 56 3 36 chr11 62476819 62477644 -88305909 - L1PA7 LINE L1 -5 6149 5298 2127 133 0 3 chr11 62477644 62477944 -88305609 - AluSg SINE Alu -11 299 1 6938 56 3 36 chr11 62477944 62478155 -88305398 - L1PA7 LINE L1 -856 5298 5082 2503 46 13 7 chr11 62478155 62478458 -88305095 - AluY SINE Alu -6 305 1 6938 56 3 36 chr11 62478458 62478863 -88304690 - L1PA7 LINE L1 -1072 5082 4727 1390 201 58 84 chr11 62478863 62478929 -88304624 + L1MA9 LINE L1 6230 6274 -38 380 331 55 0 chr11 62478948 62479111 -88304442 - L1MC4 LINE L1 -164 7878 7707 360 285 42 36 chr11 62479328 62479521 -88304032 - L1MC4a LINE L1 -342 7466 7273 1718 204 11 19 chr11 62479521 62479889 -88303664 + MLT1A1 LTR MaLR 1 365 0 359 353 13 38 chr11 62481716 62481951 -88301602 + L1M3d LINE L1 370 598 -5533 391 258 16 23 chr11 62482124 62482252 -88301301 + L1M3d LINE L1 917 1043 -5098 313 134 164 0 chr11 62483653 62483720 -88299833 - L1PA12 LINE L1 -228 5935 5858 * 761 57 0 0 chr11 62483717 62483823 -88299730 + L1PA12 LINE L1 5934 6039 -129 633 206 114 6 chr11 62484015 62484190 -88299363 + MER3 DNA MER1_type 12 205 -4 208 335 55 82 chr11 62484683 62484865 -88298688 - MIR3 SINE MIR -29 179 3 527 89 13 0 chr11 62485054 62485133 -88298420 - MADE1 DNA Mariner 0 80 1 418 277 63 23 chr11 62487207 62487383 -88296170 - MIR3 SINE MIR -67 141 4 295 388 0 30 chr11 62488002 62488167 -88295386 - MIR3 SINE MIR -41 167 8 222 37 0 0 chr11 62489407 62489434 -88294119 + (CA)n Simple_repeat Simple_repeat 1 27 0 264 381 71 16 chr11 62489718 62489844 -88293709 - L2 LINE L2 -7 3265 3133 315 0 0 0 chr11 62489964 62489999 -88293554 + (TG)n Simple_repeat Simple_repeat 1 35 0 249 139 0 0 chr11 62489999 62490042 -88293511 + (GA)n Simple_repeat Simple_repeat 2 44 0 2129 200 34 62 chr11 62490139 62490755 -88292798 - LTR9 LTR ERV1 -13 599 1 1346 172 31 12 chr11 62490755 62491011 -88292542 - HUERS-P3 LTR ERV1 0 8919 8659 4581 174 6 4 chr11 62491182 62491981 -88291572 - HUERS-P3 LTR ERV1 -2016 6903 6103 8726 111 24 9 chr11 62491989 62492714 -88290839 - HUERS-P3 LTR ERV1 -3038 5881 5125 2238 72 4 0 chr11 62492714 62493053 -88290500 - AluY SINE Alu 0 340 1 8726 111 24 9 chr11 62493053 62493649 -88289904 - HUERS-P3 LTR ERV1 -3794 5125 4539 * 15057 163 21 12 chr11 62493642 62496765 -88286788 - HUERS-P3 LTR ERV1 -5635 3284 49 238 235 154 22 chr11 62496941 62497077 -88286476 - MIR SINE MIR -49 213 60 1863 127 29 93 chr11 62498597 62499016 -88284537 + MER4B LTR ERV1 3 394 -216 1142 131 79 23 chr11 62499024 62499433 -88284120 - MER4A LTR ERV1 -118 546 1 279 54 0 0 chr11 62499462 62499499 -88284054 + (CA)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr11 62499553 62499576 -88283977 + AT_rich Low_complexity Low_complexity 1 23 0 2216 127 0 0 chr11 62499746 62500053 -88283500 + AluSx SINE Alu 1 307 -5 314 364 102 36 chr11 62500860 62501389 -88282164 + L2 LINE L2 2697 3267 -5 2355 140 31 14 chr11 62502023 62502381 -88281172 + THE1B LTR MaLR 1 364 0 22 35 0 0 chr11 62503479 62503508 -88280045 + AT_rich Low_complexity Low_complexity 1 29 0 258 183 24 12 chr11 62503599 62503681 -88279872 + (TAAA)n Simple_repeat Simple_repeat 2 84 0 3500 164 49 6 chr11 62504779 62505413 -88278140 + L1MC3 LINE L1 7122 7782 -3 2820 122 16 73 chr11 62506144 62506572 -88276981 - MER4B LTR ERV1 0 766 206 2069 135 26 0 chr11 62506572 62506875 -88276678 - AluSx SINE Alu -1 311 1 2820 122 16 73 chr11 62506875 62507071 -88276482 - MER4B LTR ERV1 -560 206 1 251 28 28 0 chr11 62507752 62507788 -88275765 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4124 192 51 72 chr11 62508015 62509148 -88274405 - LTR28 LTR ERV1 -3 1752 1 256 293 90 30 chr11 62510863 62510996 -88272557 + MIR SINE MIR 88 228 -34 289 167 211 44 chr11 62511444 62511534 -88272019 + MER91B DNA MER1_type 80 184 -6 573 259 86 0 chr11 62511733 62511895 -88271658 - MER97c DNA MER1_type? -911 179 4 1761 236 60 85 chr11 62512333 62512921 -88270632 - MLT1E LTR MaLR -8 585 13 1524 111 0 0 chr11 62513599 62513798 -88269755 + AluSq SINE Alu 1 199 -114 341 269 0 0 chr11 62514270 62514337 -88269216 - AluS SINE Alu -236 67 1 3723 50 14 0 chr11 62514337 62514776 -88268777 - LTR8 LTR ERV1 -246 445 1 29 59 0 15 chr11 62514840 62514865 -88268688 + AT_rich Low_complexity Low_complexity 1 25 -42 1677 60 0 23 chr11 62514865 62515082 -88268471 - AluY SINE Alu -17 294 83 29 59 0 15 chr11 62515082 62515124 -88268429 + AT_rich Low_complexity Low_complexity 25 67 0 744 86 0 0 chr11 62515133 62515238 -88268315 + L1MA4A LINE L1 6197 6301 -2 5077 96 49 7 chr11 62515931 62516664 -88266889 + LTR17 LTR ERV1 1 764 -16 1947 146 48 50 chr11 62516790 62517166 -88266387 + THE1C LTR MaLR 1 375 0 341 284 47 30 chr11 62517192 62517361 -88266192 + MLT1J LTR MaLR 30 201 -310 4022 149 16 65 chr11 62517590 62518316 -88265237 + LTR8 LTR ERV1 1 691 0 191 359 10 48 chr11 62518579 62518682 -88264871 - MIR3 SINE MIR -17 191 93 2299 83 13 29 chr11 62520636 62520949 -88262604 + AluSc SINE Alu 1 308 -1 3797 128 67 7 chr11 62520952 62521564 -88261989 - MER39B LTR ERV1 0 653 5 4026 154 29 31 chr11 62521831 62522604 -88260949 + LTR1 LTR ERV1 1 771 -14 5648 37 0 0 chr11 62522653 62523350 -88260203 - L1P LINE L1 -2633 3513 2817 384 276 0 10 chr11 62523463 62523561 -88259992 + L2 LINE L2 3193 3289 -24 2330 77 10 0 chr11 62524063 62524361 -88259192 + AluY SINE Alu 1 301 -10 447 267 19 9 chr11 62524368 62524473 -88259080 + MIR SINE MIR 21 126 -136 445 230 178 0 chr11 62524480 62524615 -88258938 - LTR50 LTR ERVL -24 771 613 219 233 0 0 chr11 62524644 62524687 -88258866 + MIR SINE MIR 111 153 -55 189 333 48 0 chr11 62525195 62525279 -88258274 - MIR SINE MIR -7 255 168 2050 132 7 7 chr11 62525497 62525793 -88257760 + AluSq SINE Alu 1 296 -17 214 358 109 15 chr11 62525825 62525962 -88257591 + MIR3 SINE MIR 21 170 -38 223 267 75 81 chr11 62526408 62526569 -88256984 - MIR SINE MIR -6 256 97 380 338 21 28 chr11 62526989 62527131 -88256422 + MIR3 SINE MIR 38 178 -30 276 305 91 53 chr11 62527484 62527726 -88255827 + L1ME4a LINE L1 5561 5821 -300 2301 122 16 35 chr11 62527726 62527779 -88255774 - L1MB3 LINE L1 -2 6181 6129 2011 116 20 20 chr11 62527779 62528101 -88255452 - AluSx SINE Alu 0 312 1 2301 122 16 35 chr11 62528101 62528424 -88255129 - L1MB3 LINE L1 -54 6129 5812 276 305 91 53 chr11 62528424 62528522 -88255031 + L1ME4a LINE L1 5821 5914 -207 538 315 102 14 chr11 62529174 62529390 -88254163 + MIR SINE MIR 28 262 0 433 265 68 15 chr11 62529789 62529921 -88253632 - MIR SINE MIR -71 191 53 251 363 10 0 chr11 62529931 62530033 -88253520 - MIR SINE MIR -1 261 159 201 264 111 0 chr11 62530613 62530685 -88252868 - MIR SINE MIR 0 262 183 227 316 147 0 chr11 62530687 62530823 -88252730 + MIR SINE MIR 97 252 -10 2212 100 0 0 chr11 62531796 62532104 -88251449 - AluSg SINE Alu 0 308 1 448 299 18 30 chr11 62532220 62532384 -88251169 + L2 LINE L2 86 247 -3067 724 285 43 78 chr11 62532389 62532736 -88250817 + L2 LINE L2 2634 2968 -346 254 368 58 16 chr11 62533050 62533240 -88250313 - L3 LINE CR1 -1082 495 298 306 313 47 62 chr11 62535050 62535242 -88248311 - MIR3 SINE MIR 0 208 20 533 205 27 18 chr11 62535500 62535612 -88247941 - MER81 DNA DNA -1 113 1 362 272 53 9 chr11 62536525 62536639 -88246914 - MIR3 SINE MIR -29 179 61 26 0 0 0 chr11 62539119 62539145 -88244408 + AT_rich Low_complexity Low_complexity 1 26 0 507 277 35 58 chr11 62539875 62539904 -88243649 + L1MEd LINE L1 822 850 -5410 2118 138 0 0 chr11 62539904 62540201 -88243352 + AluSx SINE Alu 1 297 -15 507 277 35 58 chr11 62540201 62540726 -88242827 + L1MEd LINE L1 850 1398 -4862 1415 119 0 5 chr11 62541206 62541400 -88242153 + AluSg/x SINE Alu 102 294 -18 2223 118 0 3 chr11 62542786 62543100 -88240453 + AluSq SINE Alu 1 313 0 30 27 0 0 chr11 62543127 62543164 -88240389 + AT_rich Low_complexity Low_complexity 1 37 0 273 261 15 0 chr11 62543619 62543684 -88239869 + MER20 DNA MER1_type 154 219 0 1147 97 17 11 chr11 62544032 62544208 -88239345 + L1MA9 LINE L1 6136 6312 0 255 293 180 28 chr11 62544311 62544522 -88239031 + MIR SINE MIR 3 256 -6 213 286 54 18 chr11 62545786 62545842 -88237711 - L2 LINE L2 -90 3182 3125 236 301 39 58 chr11 62546820 62546923 -88236630 + L2 LINE L2 3183 3283 -30 201 39 0 0 chr11 62546934 62546960 -88236593 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 189 246 49 49 chr11 62547281 62547342 -88236211 - L2 LINE L2 -5 3308 3248 371 338 165 13 chr11 62547569 62548059 -88235494 - L2 LINE L2 -272 3000 2456 858 186 58 43 chr11 62549004 62549192 -88234361 + MER20 DNA MER1_type 29 219 0 181 300 0 0 chr11 62549378 62549438 -88234115 + MIR SINE MIR 151 210 -52 280 275 91 37 chr11 62549791 62549953 -88233600 + MIR SINE MIR 30 192 -62 395 254 42 25 chr11 62550611 62550729 -88232824 + L2 LINE L2 3194 3313 0 255 303 153 0 chr11 62550737 62550859 -88232694 - MIR SINE MIR -65 143 34 502 253 152 10 chr11 62551488 62551686 -88231867 + MIR SINE MIR 35 260 -2 362 325 101 48 chr11 62552649 62553195 -88230358 + L2 LINE L2 2664 3240 -73 2400 74 3 3 chr11 62553349 62553646 -88229907 - AluSp SINE Alu -16 297 1 303 331 122 6 chr11 62553805 62553986 -88229567 + MER102a DNA MER1_type 129 330 0 421 279 216 5 chr11 62554686 62554876 -88228677 - MIR SINE MIR -11 251 22 2230 227 97 27 chr11 62554985 62555274 -88228279 - L1ME2 LINE L1 -73 6091 5824 1832 175 0 19 chr11 62555274 62555588 -88227965 - AluJb SINE Alu -4 308 1 2230 227 97 27 chr11 62555588 62556561 -88226992 - L1ME2 LINE L1 -340 5824 4740 3216 179 33 5 chr11 62556564 62557230 -88226323 - L1MB4 LINE L1 0 6180 5496 2587 143 25 45 chr11 62557284 62557800 -88225753 - L1MA6 LINE L1 -4 6296 5791 935 171 28 0 chr11 62557842 62558023 -88225530 - L1MA6 LINE L1 -499 5801 5616 422 50 33 0 chr11 62558043 62558103 -88225450 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 1394 184 18 44 chr11 62558154 62558426 -88225127 - AluJo SINE Alu -47 265 1 6368 236 50 18 chr11 62558433 62559101 -88224452 - L1MA6 LINE L1 -709 5471 4826 2308 115 0 0 chr11 62559101 62559413 -88224140 - AluSx SINE Alu 0 312 1 6368 236 50 18 chr11 62559413 62560989 -88222564 - L1MA6 LINE L1 -1354 4826 3157 1938 254 52 7 chr11 62561025 62561731 -88221822 - L1ME2 LINE L1 -1402 4744 4007 190 245 75 85 chr11 62562042 62562148 -88221405 - MIR SINE MIR -11 251 147 359 305 156 0 chr11 62562226 62562367 -88221186 + MIR SINE MIR 79 241 -21 21 0 0 0 chr11 62562827 62562848 -88220705 + AT_rich Low_complexity Low_complexity 1 21 0 217 310 23 23 chr11 62562878 62562965 -88220588 + L2 LINE L2 2712 2798 -516 256 315 30 113 chr11 62563009 62563212 -88220341 + L2 LINE L2 2906 3091 -181 233 370 103 14 chr11 62563438 62563584 -88219969 - MIR3 SINE MIR -14 194 36 302 351 0 0 chr11 62564312 62564480 -88219073 + (CATGC)n Simple_repeat Simple_repeat 1 168 0 653 109 0 8 chr11 62567240 62567359 -88216194 + (TA)n Simple_repeat Simple_repeat 1 118 0 258 310 179 22 chr11 62568232 62568416 -88215137 + MLT1J2 LTR MaLR 58 270 -180 1339 238 176 20 chr11 62568618 62569106 -88214447 - MLT1E2 LTR MaLR 0 626 63 342 284 35 9 chr11 62569226 62569342 -88214211 - L2 LINE L2 -599 2715 2597 1051 164 264 21 chr11 62569573 62569615 -88213938 - MLT2B1 LTR ERVL 0 520 489 902 43 21 14 chr11 62569615 62569756 -88213797 + (TAGA)n Simple_repeat Simple_repeat 1 142 0 1051 164 264 21 chr11 62569756 62569993 -88213560 - MLT2B1 LTR ERVL -31 489 173 24 0 0 0 chr11 62570055 62570079 -88213474 + AT_rich Low_complexity Low_complexity 1 24 0 593 226 49 0 chr11 62570279 62570443 -88213110 - MLT2B1 LTR ERVL -346 174 3 1313 166 52 31 chr11 62570444 62570734 -88212819 - ERVL-B1 LTR ERVL -6 5758 5463 225 0 0 0 chr11 62570735 62570760 -88212793 + (TG)n Simple_repeat Simple_repeat 2 26 0 2104 152 0 8 chr11 62570762 62571117 -88212436 - ERVL-B1 LTR ERVL -395 5369 5018 5222 248 42 53 chr11 62571117 62572868 -88210685 - MERVL LTR ERVL -2203 3282 1552 533 203 8 8 chr11 62572880 62572998 -88210555 - MLT2B2 LTR ERVL -394 121 4 385 328 157 5 chr11 62573584 62573782 -88209771 + MIR SINE MIR 18 245 -17 529 230 56 12 chr11 62573913 62574074 -88209479 + MLT1B LTR MaLR 1 168 -206 776 236 20 5 chr11 62574136 62574335 -88209218 + MLT1B LTR MaLR 189 390 0 2321 91 0 3 chr11 62575531 62575829 -88207724 + AluY SINE Alu 1 297 -14 22 35 0 0 chr11 62576117 62576146 -88207407 + AT_rich Low_complexity Low_complexity 1 29 0 353 250 29 36 chr11 62576706 62576846 -88206707 + MLT1H LTR MaLR 18 156 -393 266 321 12 6 chr11 62576968 62577130 -88206423 + MLT1H LTR MaLR 378 540 -9 2257 93 0 3 chr11 62577301 62577592 -88205961 - AluSx SINE Alu -22 290 1 449 311 15 7 chr11 62577612 62577747 -88205806 - MIR3 SINE MIR -43 165 30 193 302 26 69 chr11 62578272 62578388 -88205165 - L2 LINE L2 -1055 2259 2149 542 286 50 11 chr11 62578677 62578859 -88204694 - MER5A DNA MER1_type 0 189 1 209 280 110 8 chr11 62579700 62579818 -88203735 - L2 LINE L2 -7 3265 3136 2019 112 56 0 chr11 62580774 62581059 -88202494 + AluSg SINE Alu 1 301 -9 358 305 43 35 chr11 62581217 62581358 -88202195 - MIR3 SINE MIR -3 205 64 472 283 33 39 chr11 62581803 62581983 -88201570 - MIR3 SINE MIR -12 196 18 239 275 92 8 chr11 62582557 62582677 -88200876 + HAL1 LINE L1 2 131 -2376 310 364 65 29 chr11 62583406 62583681 -88199872 + L1MEd LINE L1 566 850 -5269 40678 36 22 1 chr11 62583686 62589710 -88193843 + L1PA2 LINE L1 1 6155 0 183 80 0 0 chr11 62589725 62589750 -88193803 + (A)n Simple_repeat Simple_repeat 1 25 0 33 25 0 0 chr11 62589996 62590036 -88193517 + AT_rich Low_complexity Low_complexity 1 40 0 395 286 68 19 chr11 62590099 62590424 -88193129 + L1MEd LINE L1 2315 2655 -3474 731 168 39 11 chr11 62590450 62590629 -88192924 - L1MA8 LINE L1 -5 6286 6103 2255 78 13 3 chr11 62590630 62590936 -88192617 + L1PA8 LINE L1 5864 6172 0 457 143 0 0 chr11 62590938 62591015 -88192538 - L1MA8 LINE L1 -181 6110 6034 380 269 9 0 chr11 62591019 62591127 -88192426 + L1MC4 LINE L1 1535 1643 -4753 2167 118 0 0 chr11 62591127 62591432 -88192121 + AluSx SINE Alu 1 305 -7 704 264 105 63 chr11 62591477 62592595 -88190958 + L1MC4 LINE L1 2768 3931 -2284 * 1010 234 139 30 chr11 62592588 62593500 -88190053 + L1MC4 LINE L1 5071 6126 -107 2048 143 3 3 chr11 62593527 62593828 -88189725 - AluSx SINE Alu -11 301 1 237 279 65 15 chr11 62593917 62594118 -88189435 + L1ME LINE L1 5267 5477 -685 2226 105 20 3 chr11 62594724 62595029 -88188524 + AluSq SINE Alu 1 310 -3 231 309 0 0 chr11 62595100 62595168 -88188385 + T-rich Low_complexity Low_complexity 1 68 0 1347 59 5 0 chr11 62595291 62595740 -88187813 + (CTATG)n Simple_repeat Simple_repeat 1 451 0 1026 237 28 16 chr11 62596541 62596794 -88186759 - MIR SINE MIR 0 262 7 825 234 81 0 chr11 62596822 62597019 -88186534 - Charlie1b DNA MER1_type -309 214 2 4486 105 12 13 chr11 62597526 62598201 -88185352 + L1PA15 LINE L1 5479 6152 -13 343 333 119 18 chr11 62598233 62598569 -88184984 + L1ME3A LINE L1 5033 5402 -744 581 259 52 14 chr11 62598578 62598790 -88184763 + L1ME3A LINE L1 5509 5728 -442 376 310 70 12 chr11 62598900 62599071 -88184482 + L1ME3A LINE L1 5767 5947 -223 225 0 0 0 chr11 62599077 62599102 -88184451 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 6812 55 14 64 chr11 62599102 62600797 -88182756 + SVA Other Other 57 1386 0 482 297 77 0 chr11 62601365 62601547 -88182006 + MIR SINE MIR 64 259 -3 221 317 54 88 chr11 62602982 62603187 -88180366 - L3 LINE CR1 -80 1497 1300 181 116 23 23 chr11 62603203 62603246 -88180307 + GA-rich Low_complexity Low_complexity 2 44 0 519 270 79 0 chr11 62604576 62604728 -88178825 + MIR SINE MIR 8 171 -91 959 104 0 0 chr11 62605185 62605310 -88178243 - AluSp SINE Alu -188 125 1 2194 104 0 0 chr11 62606157 62606446 -88177107 - AluY SINE Alu -1 310 22 2999 123 29 0 chr11 62606446 62606932 -88176621 + Tigger1 DNA MER2_type 1797 2296 -122 1867 93 0 45 chr11 62606945 62607213 -88176340 - AluSc SINE Alu -23 286 31 299 264 38 19 chr11 62607347 62607453 -88176100 + MIR SINE MIR 112 219 -43 512 290 19 0 chr11 62607463 62607625 -88175928 - MIR SINE MIR -21 241 77 544 325 15 25 chr11 62607898 62608101 -88175452 + MIR3 SINE MIR 5 205 -3 1267 200 4 11 chr11 62608567 62608827 -88174726 - MLT1D LTR MaLR 0 505 248 1530 163 19 0 chr11 62608841 62609098 -88174455 - MER1B DNA MER1_type -72 267 6 222 240 0 20 chr11 62610265 62610315 -88173238 - MIR SINE MIR -19 243 195 820 331 71 28 chr11 62610487 62611027 -88172526 - L2 LINE L2 -56 3257 2694 2079 75 4 18 chr11 62611932 62612213 -88171340 + AluY SINE Alu 35 311 0 390 297 238 0 chr11 62612360 62612562 -88170991 + MIR SINE MIR 1 250 -12 714 211 0 0 chr11 62613508 62613631 -88169922 + FLAM_A SINE Alu 1 123 -10 27 29 0 0 chr11 62614718 62614752 -88168801 + AT_rich Low_complexity Low_complexity 1 34 0 251 272 103 29 chr11 62615199 62615335 -88168218 + MIR SINE MIR 114 259 -3 211 316 0 0 chr11 62616391 62616448 -88167105 - L2 LINE L2 -519 2795 2739 451 280 36 47 chr11 62616504 62616783 -88166770 - MER31-int LTR ERV1 -1331 3605 3330 2192 111 44 36 chr11 62616997 62617358 -88166195 - THE1B LTR MaLR 0 364 1 295 218 186 45 chr11 62618237 62618393 -88165160 + HAL1b LINE L1 1171 1348 0 553 352 125 19 chr11 62619817 62620329 -88163224 - L2 LINE L2 -1746 1568 1003 613 230 135 39 chr11 62620937 62621167 -88162386 - MIR SINE MIR 0 262 11 362 164 0 0 chr11 62621310 62621371 -88162182 + Tigger2 DNA MER2_type 1 61 -2657 184 309 107 0 chr11 62621372 62621456 -88162097 - L2 LINE L2 -1987 1327 1235 5119 95 47 6 chr11 62621549 62622337 -88161216 + SVA Other Other 23 842 -544 24 32 0 0 chr11 62622687 62622718 -88160835 + AT_rich Low_complexity Low_complexity 1 31 0 371 247 24 29 chr11 62622989 62623159 -88160394 - L1ME LINE L1 -348 5773 5605 805 266 90 4 chr11 62623241 62623497 -88160056 - L2 LINE L2 0 3313 3036 568 293 49 9 chr11 62623564 62623789 -88159764 + L1M4b LINE L1 1 234 -6625 2018 134 43 40 chr11 62623792 62624166 -88159387 + THE1C LTR MaLR 1 375 0 283 331 103 40 chr11 62624380 62624682 -88158871 + L1M4b LINE L1 830 1150 -5705 1913 144 36 0 chr11 62624682 62625015 -88158538 - MLT1B LTR MaLR -5 385 41 387 213 82 58 chr11 62625047 62625244 -88158309 + L1M4b LINE L1 1291 1498 -5361 37895 38 27 2 chr11 62625261 62630177 -88153376 + L1P LINE L1 4 5044 -1102 21 0 0 0 chr11 62630723 62630744 -88152809 + AT_rich Low_complexity Low_complexity 1 21 0 371 262 187 21 chr11 62631498 62631685 -88151868 + MIR SINE MIR 31 248 -14 322 287 120 48 chr11 62631717 62631884 -88151669 + MIR3 SINE MIR 16 194 -14 324 333 0 11 chr11 62632224 62632255 -88151298 + MIR SINE MIR 44 74 -146 1882 167 0 0 chr11 62632255 62632561 -88150992 + AluJo SINE Alu 1 306 -6 324 333 0 11 chr11 62632561 62632644 -88150909 + MIR SINE MIR 74 153 -67 223 275 145 0 chr11 62633029 62633098 -88150455 - MIR3 SINE MIR -5 203 125 234 281 158 50 chr11 62633108 62633247 -88150306 - MIR SINE MIR -2 260 107 570 313 110 17 chr11 62633307 62633607 -88149946 - L2 LINE L2 0 3313 2986 577 298 47 0 chr11 62633615 62633786 -88149767 - MIR SINE MIR -65 197 19 2209 125 0 0 chr11 62633815 62634111 -88149442 - AluSx SINE Alu -16 296 1 235 330 39 10 chr11 62634124 62634227 -88149326 - MIR3 SINE MIR -100 108 3 306 330 37 0 chr11 62636973 62637082 -88146471 + MIR SINE MIR 51 163 -99 185 219 24 0 chr11 62637781 62637822 -88145731 + L3b LINE CR1 1540 1581 -2 229 248 171 78 chr11 62639016 62639145 -88144408 - MIR3 SINE MIR -51 157 17 619 250 80 67 chr11 62639201 62639425 -88144128 + MIR SINE MIR 13 239 -23 285 247 25 0 chr11 62639524 62639605 -88143948 + (TA)n Simple_repeat Simple_repeat 1 83 0 244 288 12 12 chr11 62642698 62642778 -88140775 - Charlie4 DNA MER1_type 0 1961 1882 350 339 25 0 chr11 62643068 62643189 -88140364 - L2 LINE L2 -6 3307 3184 296 266 63 0 chr11 62644146 62644225 -88139328 + MIR3 SINE MIR 111 194 -14 23 0 0 0 chr11 62644385 62644408 -88139145 + AT_rich Low_complexity Low_complexity 1 23 0 699 271 119 37 chr11 62646034 62646329 -88137224 + L2 LINE L2 370 688 -2626 189 74 0 0 chr11 62646331 62646358 -88137195 + (CA)n Simple_repeat Simple_repeat 2 28 0 411 21 0 0 chr11 62646389 62646437 -88137116 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 2381 111 19 30 chr11 62646444 62646812 -88136741 + THE1B LTR MaLR 1 364 0 11685 88 11 3 chr11 62646813 62648378 -88135175 + THE1B-int LTR MaLR 2 1580 0 1089 89 26 74 chr11 62648379 62648569 -88134984 - THE1B LTR MaLR -183 181 1 1957 285 109 10 chr11 62648570 62649251 -88134302 + L2 LINE L2 709 1456 -1858 216 209 0 0 chr11 62649358 62649401 -88134152 + A-rich Low_complexity Low_complexity 1 43 0 2261 93 0 19 chr11 62650766 62651079 -88132474 - AluSx SINE Alu -5 307 1 297 0 0 0 chr11 62651187 62651220 -88132333 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 423 0 0 0 chr11 62651219 62651266 -88132287 + (GA)n Simple_repeat Simple_repeat 2 48 0 193 374 25 43 chr11 62651495 62651658 -88131895 - L2 LINE L2 -904 2410 2251 368 363 14 14 chr11 62651673 62651819 -88131734 - MIR SINE MIR -112 150 5 28 29 0 0 chr11 62653243 62653278 -88130275 + AT_rich Low_complexity Low_complexity 1 35 0 2273 67 11 3 chr11 62653669 62653954 -88129599 + AluY SINE Alu 1 287 -24 262 247 74 12 chr11 62654401 62654482 -88129071 - L2 LINE L2 -1 3271 3186 216 289 93 10 chr11 62654476 62654573 -88128980 - L2 LINE L2 -837 2477 2373 * 1075 222 62 0 chr11 62655043 62655268 -88128285 + MIR SINE MIR 18 256 -6 211 319 187 11 chr11 62655561 62655652 -88127901 - L2 LINE L2 -11 3261 3155 2172 95 10 0 chr11 62656101 62656395 -88127158 - AluSq SINE Alu -12 301 5 216 346 93 0 chr11 62656653 62656760 -88126793 - MIR3 SINE MIR -7 201 85 21 57 0 0 chr11 62658043 62658078 -88125475 + AT_rich Low_complexity Low_complexity 1 35 0 225 0 0 0 chr11 62659988 62660013 -88123540 + (A)n Simple_repeat Simple_repeat 1 25 0 216 377 14 0 chr11 62660103 62660172 -88123381 - MER5A DNA MER1_type -63 126 57 1471 231 50 74 chr11 62660271 62660867 -88122686 + L1MD2 LINE L1 5764 6345 -14 538 313 45 10 chr11 62660998 62661199 -88122354 + MIR SINE MIR 55 262 0 766 99 0 8 chr11 62661517 62661638 -88121915 - L1MA8 LINE L1 -13 6278 6159 21 36 0 0 chr11 62662732 62662760 -88120793 + AT_rich Low_complexity Low_complexity 1 28 0 387 220 180 7 chr11 62662801 62662951 -88120602 - MER104 DNA Tc2 -3 177 2 435 306 112 10 chr11 62663020 62663226 -88120327 + MIR SINE MIR 30 256 -6 889 200 33 0 chr11 62663717 62663932 -88119621 + L1M4 LINE L1 5160 5381 -765 30917 30 0 0 chr11 62664035 62668520 -88115033 + L1PA3 LINE L1 1666 6152 -3 2075 105 7 0 chr11 62668668 62668953 -88114600 - AluSx SINE Alu -25 287 1 359 255 28 0 chr11 62668953 62669059 -88114494 - L1MEc LINE L1 -4753 1643 1535 478 143 0 0 chr11 62669063 62669140 -88114413 + L1MA8 LINE L1 6034 6110 -181 2249 78 13 3 chr11 62669142 62669448 -88114105 - L1PA8 LINE L1 0 6172 5864 749 168 39 11 chr11 62669449 62669628 -88113925 + L1MA8 LINE L1 6103 6286 -5 520 293 78 16 chr11 62669654 62669975 -88113578 - L1M4 LINE L1 -3474 2672 2332 33 25 0 0 chr11 62670038 62670078 -88113475 + AT_rich Low_complexity Low_complexity 1 40 0 7862 16 0 0 chr11 62670366 62671861 -88111692 - L1PA2 LINE L1 0 6155 4661 1604 21 0 0 chr11 62671861 62672048 -88111505 + L1P2 LINE L1 5636 5822 -333 1174 151 11 11 chr11 62672148 62672333 -88111220 - AluSx SINE Alu -127 185 1 1080 287 61 24 chr11 62672587 62673095 -88110458 - L1ME3A LINE L1 -219 6762 6236 1220 218 6 54 chr11 62673172 62673489 -88110064 - AluJb SINE Alu 0 302 1 344 293 45 10 chr11 62673587 62673785 -88109768 - L1ME3A LINE L1 -4345 2793 2589 789 227 20 0 chr11 62673820 62673970 -88109583 + MER58A DNA MER1_type 2 154 0 356 158 0 98 chr11 62673970 62674048 -88109505 + MLT1E2 LTR MaLR 95 164 -462 1797 255 77 33 chr11 62674051 62674904 -88108649 - L1ME3A LINE L1 -4457 2500 1568 2278 179 33 12 chr11 62674961 62675391 -88108162 - MLT1E2 LTR MaLR -50 576 138 936 221 42 50 chr11 62675604 62675961 -88107592 - L1MA9 LINE L1 -25 6287 5934 622 234 10 16 chr11 62675958 62676163 -88107390 + L1MB7 LINE L1 4676 4877 -1269 * 21 36 0 0 chr11 62676242 62676270 -88107283 + AT_rich Low_complexity Low_complexity 1 28 0 2272 112 0 0 chr11 62676280 62676583 -88106970 + AluSx SINE Alu 1 303 -9 466 251 183 0 chr11 62676980 62677155 -88106398 + MER5C DNA MER1_type 117 323 -1 1915 111 3 40 chr11 62677427 62677751 -88105802 - AluSx SINE Alu 0 312 1 242 259 108 0 chr11 62678247 62678386 -88105167 - L1ME LINE L1 -236 5885 5732 1182 183 48 4 chr11 62679079 62679347 -88104206 + L1MB7 LINE L1 4862 5141 -1005 244 176 14 27 chr11 62679367 62679441 -88104112 + GA-rich Low_complexity Low_complexity 2 74 0 267 274 48 12 chr11 62679526 62679610 -88103943 + MER5B DNA MER1_type 17 103 -75 914 61 0 0 chr11 62679613 62679728 -88103825 - L1P LINE L1 -3494 2652 2538 * 3125 22 25 0 chr11 62679722 62680125 -88103428 + L1P LINE L1 2661 3073 -3073 382 263 97 54 chr11 62680225 62680411 -88103142 + MIR SINE MIR 69 262 0 2380 90 0 0 chr11 62681648 62681949 -88101604 - AluSq SINE Alu -11 302 2 2891 13 0 0 chr11 62683027 62683341 -88100212 + AluYb8 SINE Alu 1 314 -4 3909 167 36 3 chr11 62683458 62684160 -88099393 + L1MB7 LINE L1 5384 6108 -76 3716 147 19 6 chr11 62684179 62684845 -88098708 - L1MA4 LINE L1 -7 6293 5619 1787 125 82 6 chr11 62684845 62684872 -88098681 + L1MB7 LINE L1 5160 5184 -1116 189 0 0 0 chr11 62684872 62684893 -88098660 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 1787 125 82 6 chr11 62684893 62685272 -88098281 + L1MB7 LINE L1 5184 5600 -700 234 143 0 0 chr11 62685282 62685324 -88098229 + L1MB7 LINE L1 6125 6166 -18 204 366 33 56 chr11 62685464 62685677 -88097876 - L2 LINE L2 -224 3048 2841 361 363 67 33 chr11 62686286 62686617 -88096936 - L2 LINE L2 -1223 2091 1750 324 266 64 37 chr11 62686710 62686819 -88096734 - L2 LINE L2 -3 3310 3199 2111 156 32 8 chr11 62687687 62688065 -88095488 - MER57A LTR ERV1 0 403 17 672 250 95 0 chr11 62688206 62688374 -88095179 - MER20 DNA MER1_type -32 187 4 1783 239 67 17 chr11 62688381 62688907 -88094646 + L2 LINE L2 1512 2063 -1251 291 293 12 0 chr11 62689085 62689167 -88094386 + L2 LINE L2 3231 3313 0 25 0 0 0 chr11 62690862 62690887 -88092666 + AT_rich Low_complexity Low_complexity 1 25 0 362 306 40 0 chr11 62691288 62691412 -88092141 - L2 LINE L2 -930 2384 2256 852 312 30 52 chr11 62691454 62691916 -88091637 + L1M3a LINE L1 1 452 -5503 10044 211 28 38 chr11 62692703 62694778 -88088775 + L1MA4 LINE L1 520 2533 -3795 6716 19 1 1 chr11 62694778 62695555 -88087998 + L1PA3 LINE L1 5376 6152 -3 10044 211 28 38 chr11 62695555 62697568 -88085985 + L1MA4 LINE L1 2533 4564 -1764 38635 66 10 7 chr11 62697577 62703702 -88079851 + L1PA6 LINE L1 11 6154 0 5988 160 17 5 chr11 62703689 62705596 -88077957 + L1MA4 LINE L1 4542 6476 -6 * 260 170 0 21 chr11 62706187 62706234 -88077319 + L1M3c LINE L1 958 1003 -6095 3283 156 28 3 chr11 62707088 62707654 -88075899 - LTR22 LTR ERVK 0 580 1 1067 277 40 16 chr11 62707778 62708367 -88075186 + L1M3c LINE L1 1681 2298 -4800 * 5471 149 30 19 chr11 62708362 62708836 -88074717 - L1P4 LINE L1 -521 5647 5180 1984 126 16 23 chr11 62708836 62709146 -88074407 - AluSg1 SINE Alu -1 308 1 5471 149 30 19 chr11 62709146 62709934 -88073619 - L1P4 LINE L1 -988 5180 4369 1544 161 0 4 chr11 62709934 62710188 -88073365 + AluJb SINE Alu 60 312 0 790 284 82 26 chr11 62710188 62710652 -88072901 + L1ME LINE L1 5267 5756 -406 2500 139 19 23 chr11 62710661 62711104 -88072449 - MER61C LTR ERV1 0 434 4 5659 127 49 17 chr11 62711106 62711608 -88071945 - MER61C-int LTR ERV1 -4 5213 4728 5330 83 112 0 chr11 62711608 62712351 -88071202 + LTR12 LTR ERV1 1 826 0 5659 127 49 17 chr11 62712351 62712792 -88070761 - MER61C-int LTR ERV1 -489 4728 4240 3185 128 8 11 chr11 62712789 62713477 -88070076 - MER61-int LTR ERV1 -3538 2006 1212 * 7546 115 19 67 chr11 62713477 62714227 -88069326 + Tigger1 DNA MER2_type 1116 1900 -518 2201 98 0 0 chr11 62714227 62714514 -88069039 - AluY SINE Alu -3 308 22 7546 115 19 67 chr11 62714514 62715013 -88068540 + Tigger1 DNA MER2_type 1900 2297 -121 2063 124 3 7 chr11 62715013 62715303 -88068250 - AluSx SINE Alu -23 289 1 7546 115 19 67 chr11 62715303 62715420 -88068133 + Tigger1 DNA MER2_type 2297 2418 0 23 33 0 0 chr11 62715420 62715450 -88068103 + AT_rich Low_complexity Low_complexity 1 30 0 1148 304 50 13 chr11 62715521 62715902 -88067651 + MLT1H1 LTR MaLR 1 395 -160 1461 114 0 0 chr11 62715919 62716129 -88067424 + L1PA13 LINE L1 5943 6152 -11 384 246 34 0 chr11 62716137 62716255 -88067298 + L1M4 LINE L1 4633 4754 -1392 309 282 8 34 chr11 62716257 62716374 -88067179 + MLT1H1 LTR MaLR 184 297 -258 5860 203 28 38 chr11 62716631 62719106 -88064447 + L1MB4 LINE L1 3737 6180 0 510 287 32 5 chr11 62719135 62719323 -88064230 + L1M4 LINE L1 5049 5241 -905 4235 31 6 2 chr11 62719654 62720173 -88063380 - L1PA4 LINE L1 0 6155 5635 1893 62 0 0 chr11 62720175 62720416 -88063137 + L1P LINE L1 4664 4904 -1242 5952 261 59 27 chr11 62720419 62721810 -88061743 + L1MD2 LINE L1 3030 4375 -1984 1831 136 0 7 chr11 62721810 62722082 -88061471 + AluSq SINE Alu 42 311 -2 5952 261 59 27 chr11 62722082 62723706 -88059847 + L1MD2 LINE L1 4375 6146 -213 329 296 25 6 chr11 62723704 62723863 -88059690 + L1MD3 LINE L1 7832 7993 -2 * 556 268 132 72 chr11 62725754 62726019 -88057534 - L2 LINE L2 -6 3307 3027 268 211 14 14 chr11 62726029 62726100 -88057453 - MLT1G LTR MaLR -10 580 510 2016 289 81 3 chr11 62726451 62727160 -88056393 - L2 LINE L2 -282 3031 2259 14481 176 10 7 chr11 62727168 62731122 -88052431 + L1PB1 LINE L1 2175 6144 -7 300 247 25 12 chr11 62731199 62731280 -88052273 - L2 LINE L2 -1099 2215 2134 1009 219 66 3 chr11 62731281 62731583 -88051970 + MER33 DNA MER1_type 3 323 -1 191 208 19 38 chr11 62731664 62731717 -88051836 - L2 LINE L2 -676 2638 2587 880 215 12 6 chr11 62731750 62731922 -88051631 - MSTD LTR MaLR 0 396 224 1476 92 0 0 chr11 62731922 62732107 -88051446 + AluY SINE Alu 1 185 -126 444 119 0 0 chr11 62732107 62732174 -88051379 + AluY SINE Alu 227 293 -16 6130 183 19 12 chr11 62732174 62733418 -88050135 + L1MA1 LINE L1 3185 4436 -1710 4053 123 16 5 chr11 62733412 62734414 -88049139 + L1MA1 LINE L1 4814 5831 -471 * 4078 173 2 0 chr11 62734414 62735045 -88048508 - L1PA15-16 LINE L1 -6215 634 3 270 331 41 25 chr11 62735098 62735219 -88048334 - MIR SINE MIR -112 150 28 1692 294 82 46 chr11 62736519 62737757 -88045796 + L1M4 LINE L1 16 1297 -5245 3644 229 67 23 chr11 62737840 62739462 -88044091 + L1M3e LINE L1 1144 2828 -4279 452 151 0 12 chr11 62739474 62739560 -88043993 + L1MA8 LINE L1 6015 6099 -192 3346 165 90 25 chr11 62739561 62740143 -88043410 + L1MCa LINE L1 886 1429 -4997 2200 121 90 58 chr11 62740143 62740556 -88042997 - MSTA LTR MaLR -2 426 1 3346 165 90 25 chr11 62740556 62741217 -88042336 + L1MCa LINE L1 1429 2304 -4122 1663 172 110 79 chr11 62741525 62741583 -88041970 - L1MB7 LINE L1 -9 6175 6120 2065 94 70 0 chr11 62741583 62741869 -88041684 - AluY SINE Alu -5 306 1 1663 172 110 79 chr11 62741869 62742292 -88041261 - L1MB7 LINE L1 -64 6120 5679 462 295 160 8 chr11 62742300 62742537 -88041016 + L2 LINE L2 3041 3313 0 200 316 0 26 chr11 62742816 62742892 -88040661 - MIR SINE MIR -87 175 102 2971 122 42 36 chr11 62744717 62744850 -88038703 - L1PA15 LINE L1 0 6165 6034 2121 125 0 3 chr11 62744850 62745146 -88038407 - AluSg SINE Alu -15 295 1 2971 122 42 36 chr11 62745146 62745514 -88038039 - L1PA15 LINE L1 -131 6034 5661 513 119 36 12 chr11 62745691 62745775 -88037778 - LTR13 LTR ERVK 0 1007 922 1651 128 5 15 chr11 62745942 62746396 -88037157 + L1PA13 LINE L1 5051 5498 -663 * 11945 27 1 0 chr11 62746388 62747813 -88035740 - L1PA3 LINE L1 -1581 4565 3139 7227 34 21 2 chr11 62747813 62749372 -88034181 + L1PA3 LINE L1 4580 6155 0 4706 99 8 0 chr11 62749378 62750046 -88033507 + L1PA13 LINE L1 5483 6155 -8 2027 211 83 38 chr11 62750625 62751259 -88032294 + L1ME1 LINE L1 5499 6331 -3 2246 122 0 0 chr11 62751410 62751705 -88031848 - AluSx SINE Alu -15 297 3 770 264 24 32 chr11 62751858 62752108 -88031445 - L1ME LINE L1 -429 5735 5488 7137 31 0 0 chr11 62752185 62753024 -88030529 - L1PA5 LINE L1 -1 6153 5315 2021 236 58 76 chr11 62753021 62753550 -88030003 - L1 LINE L1 -3846 2504 1967 * 899 29 0 0 chr11 62753550 62753654 -88029899 + L1PA3 LINE L1 6049 6152 -3 2021 236 58 76 chr11 62753654 62753959 -88029594 - L1 LINE L1 -4383 1967 1658 2357 110 3 0 chr11 62753959 62754269 -88029284 + AluSq SINE Alu 1 311 -2 2021 236 58 76 chr11 62754269 62754333 -88029220 - L1 LINE L1 -4692 1658 1594 207 0 0 0 chr11 62754333 62754356 -88029197 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2021 236 58 76 chr11 62754356 62754697 -88028856 - L1 LINE L1 -4756 1594 1305 1155 288 49 41 chr11 62754872 62755449 -88028104 - L1 LINE L1 -4759 591 156 * 1361 247 28 117 chr11 62755438 62755916 -88027637 - L1MEc LINE L1 -3325 2890 2468 319 93 0 0 chr11 62755916 62755959 -88027594 - U2 snRNA snRNA -145 43 1 1361 247 28 117 chr11 62755959 62756291 -88027262 - L1MEc LINE L1 -3747 2468 2108 298 237 53 53 chr11 62756391 62756505 -88027048 + L2 LINE L2 3200 3313 0 219 353 8 16 chr11 62756681 62756803 -88026750 + MER91A DNA MER1_type 40 160 -36 208 294 0 0 chr11 62756875 62756926 -88026627 + MER91A DNA MER1_type 138 188 -8 1415 206 13 35 chr11 62759093 62759279 -88024274 - AluJo SINE Alu -7 305 127 692 33 22 0 chr11 62759279 62759369 -88024184 + (TTTTA)n Simple_repeat Simple_repeat 5 96 0 1415 206 13 35 chr11 62759369 62759493 -88024060 - AluJo SINE Alu -185 127 2 362 39 19 0 chr11 62759830 62759882 -88023671 + (TG)n Simple_repeat Simple_repeat 2 54 0 229 327 19 19 chr11 62760258 62760362 -88023191 - L2 LINE L2 -361 2911 2808 423 291 59 23 chr11 62760545 62760765 -88022788 - L2 LINE L2 -877 2437 2210 21 0 0 0 chr11 62761985 62762006 -88021547 + AT_rich Low_complexity Low_complexity 1 21 0 214 326 70 31 chr11 62764533 62764662 -88018891 - L2 LINE L2 -1 3312 3179 611 6 38 82 chr11 62765037 62765220 -88018333 + (TA)n Simple_repeat Simple_repeat 1 175 0 212 143 86 19 chr11 62765270 62765375 -88018178 + (TA)n Simple_repeat Simple_repeat 2 113 0 1108 152 12 0 chr11 62765477 62765648 -88017905 + AluJb SINE Alu 128 300 -12 260 253 11 99 chr11 62765676 62765767 -88017786 - MER63 DNA MER1_type -1 1060 978 366 252 8 69 chr11 62765770 62765901 -88017652 - MER63 DNA MER1_type -312 750 2 1166 196 3 42 chr11 62765955 62766144 -88017409 + L1MB3 LINE L1 5908 6084 -99 2289 115 0 3 chr11 62766144 62766457 -88017096 - AluSx SINE Alu 0 312 1 1166 196 3 42 chr11 62766457 62766552 -88017001 + L1MB3 LINE L1 6084 6181 -2 2317 82 3 10 chr11 62766704 62767009 -88016544 - AluY SINE Alu -8 303 1 192 167 0 0 chr11 62767335 62767371 -88016182 + MIR SINE MIR 109 144 -64 3322 118 47 0 chr11 62767513 62768004 -88015549 - MER75 DNA T2_type 0 514 1 2429 84 0 0 chr11 62768345 62768644 -88014909 - AluY SINE Alu -12 299 1 448 275 102 18 chr11 62769209 62769376 -88014177 - MIR3 SINE MIR -9 199 19 319 184 23 11 chr11 62770697 62770784 -88012769 + GA-rich Low_complexity Low_complexity 1 88 0 186 128 0 0 chr11 62770854 62770893 -88012660 + (CA)n Simple_repeat Simple_repeat 2 40 0 252 189 0 38 chr11 62770893 62770922 -88012631 + GA-rich Low_complexity Low_complexity 3 31 -22 243 61 0 0 chr11 62770922 62770955 -88012598 + (CA)n Simple_repeat Simple_repeat 2 34 0 252 189 0 38 chr11 62770955 62770978 -88012575 + GA-rich Low_complexity Low_complexity 31 53 0 513 115 0 0 chr11 62770985 62771072 -88012481 + (CA)n Simple_repeat Simple_repeat 2 88 0 454 274 134 0 chr11 62772001 62772165 -88011388 + MIR SINE MIR 2 187 -75 3461 36 40 2 chr11 62772260 62772739 -88010814 + L1PA8 LINE L1 5720 6214 0 942 188 39 0 chr11 62772827 62773008 -88010545 + MER5A DNA MER1_type 1 188 -1 225 376 32 24 chr11 62773241 62773366 -88010187 - MIR3 SINE MIR -49 159 34 377 295 0 0 chr11 62773617 62773722 -88009831 - MIR SINE MIR -105 157 53 2429 58 3 3 chr11 62773976 62774268 -88009285 + AluY SINE Alu 13 304 -7 1944 193 83 23 chr11 62775743 62776178 -88007375 + MLT1C LTR MaLR 1 461 -6 1426 123 51 113 chr11 62776695 62776987 -88006566 - AluSq SINE Alu -19 294 21 181 291 101 0 chr11 62777244 62777323 -88006230 - L2 LINE L2 -508 2806 2720 1077 163 35 27 chr11 62777344 62777602 -88005951 - Charlie1 DNA MER1_type -8 2753 2494 844 246 36 78 chr11 62777611 62777968 -88005585 - MER39 LTR ERV1 -10 697 309 788 188 35 0 chr11 62777968 62778112 -88005441 - FRAM SINE Alu 0 176 28 840 161 92 0 chr11 62778256 62778430 -88005123 - Charlie1 DNA MER1_type -272 2489 2300 * 970 174 18 35 chr11 62778427 62778635 -88004918 - MER20 DNA MER1_type -5 214 1 459 167 48 0 chr11 62778636 62778719 -88004834 - Charlie1 DNA MER1_type -467 2294 2208 1801 160 20 13 chr11 62778719 62779019 -88004534 + MLT1A1 LTR MaLR 1 302 -63 475 248 9 9 chr11 62779029 62779142 -88004411 + MIR SINE MIR 21 133 -75 2903 132 7 0 chr11 62779217 62779648 -88003905 + MER57B LTR ERV1 1 434 0 183 217 130 43 chr11 62779726 62779795 -88003758 - L2 LINE L2 -5 3267 3193 585 168 9 19 chr11 62780346 62780453 -88003100 - MER5A DNA MER1_type 0 189 84 875 252 6 40 chr11 62780458 62780800 -88002753 + LTR28 LTR ERV1 310 1231 -147 * 2159 222 8 83 chr11 62780778 62781369 -88002184 + MER52A LTR ERV1 1209 1755 0 272 271 66 30 chr11 62781450 62781541 -88002012 + MIR3 SINE MIR 24 125 -83 1826 190 47 18 chr11 62781541 62781926 -88001627 - MSTD LTR MaLR 0 396 1 272 271 66 30 chr11 62781926 62782000 -88001553 + MIR3 SINE MIR 125 195 -13 189 336 47 23 chr11 62783546 62783674 -87999879 + L2 LINE L2 3180 3310 -3 216 297 42 25 chr11 62784434 62784552 -87999001 + MIR3 SINE MIR 3 122 -86 1988 90 4 0 chr11 62784970 62785226 -87998327 + LTR5 LTR ERVK 1 257 -712 2942 16 0 0 chr11 62785226 62785540 -87998013 + AluYb8 SINE Alu 1 314 -4 4687 120 37 13 chr11 62785566 62786264 -87997289 + LTR5 LTR ERVK 255 969 0 2088 125 7 7 chr11 62786636 62786939 -87996614 - AluSx SINE Alu -9 303 1 26 0 0 0 chr11 62787361 62787387 -87996166 + AT_rich Low_complexity Low_complexity 1 26 0 258 274 26 98 chr11 62787520 62787673 -87995880 - MIR3 SINE MIR -52 156 15 2505 274 147 31 chr11 62788208 62789809 -87993744 - L2 LINE L2 0 3313 1899 1418 179 41 25 chr11 62789809 62790127 -87993426 + MER33 DNA MER1_type 1 323 -1 889 206 81 10 chr11 62790136 62790345 -87993208 + MER58A DNA MER1_type 1 224 0 2505 274 147 31 chr11 62790345 62790409 -87993144 - L2 LINE L2 -1421 1892 1451 732 150 0 15 chr11 62790899 62791032 -87992521 - L1MB3 LINE L1 -7 6176 6046 362 301 70 7 chr11 62791112 62791255 -87992298 + MER103 DNA DNA 9 160 -6 2062 108 0 85 chr11 62791303 62791644 -87991909 + AluSx SINE Alu 1 312 0 237 33 0 0 chr11 62792117 62792147 -87991406 + (TC)n Simple_repeat Simple_repeat 1 30 0 354 274 123 24 chr11 62792644 62792856 -87990697 + MIR SINE MIR 30 262 0 869 181 31 26 chr11 62793256 62793449 -87990104 - L1MB8 LINE L1 0 6178 5985 325 256 28 144 chr11 62793474 62793689 -87989864 - MIR SINE MIR -70 192 3 246 179 54 0 chr11 62794499 62794555 -87988998 + GA-rich Low_complexity Low_complexity 6 64 0 597 72 0 0 chr11 62794555 62794638 -87988915 + (TG)n Simple_repeat Simple_repeat 1 83 0 283 222 28 14 chr11 62794699 62794771 -87988782 - Charlie4 DNA MER1_type -5 1956 1884 2508 90 0 0 chr11 62795030 62795341 -87988212 + AluSx SINE Alu 1 311 -1 1937 175 18 50 chr11 62795391 62795792 -87987761 + MLT1B LTR MaLR 1 388 -2 360 239 84 39 chr11 62796140 62796295 -87987258 - L1ME4a LINE L1 -6 6115 5954 632 259 53 9 chr11 62796323 62796551 -87987002 - L1ME4a LINE L1 -237 5884 5647 1036 142 0 79 chr11 62796552 62796742 -87986811 + MLT1C LTR MaLR 1 175 -292 2198 107 7 0 chr11 62796752 62797041 -87986512 + AluSg SINE Alu 1 291 -19 2028 147 15 9 chr11 62797042 62797369 -87986184 + MER47A DNA MER2_type 38 366 0 850 271 75 68 chr11 62797383 62797836 -87985717 - L1MC4a LINE L1 -1833 5975 5520 235 186 34 34 chr11 62798773 62798832 -87984721 - MIR3 SINE MIR -46 162 104 2395 82 0 7 chr11 62798884 62799187 -87984366 - AluSx SINE Alu -11 301 1 263 337 20 0 chr11 62799244 62799345 -87984208 - MIR3 SINE MIR -21 187 85 1727 164 55 3 chr11 62800555 62800848 -87982705 - AluJo SINE Alu -4 308 1 777 297 53 36 chr11 62800858 62801581 -87981972 - L1MC4a LINE L1 -813 5333 4599 459 135 122 0 chr11 62801864 62801938 -87981615 - FRAM SINE Alu -26 150 68 805 316 53 13 chr11 62802032 62802336 -87981217 + LTR16C LTR ERVL 149 464 -27 4979 213 41 26 chr11 62802336 62802979 -87980574 - L1MEc LINE L1 -2812 3403 2771 1884 112 0 4 chr11 62802979 62803229 -87980324 + AluSx SINE Alu 1 249 -63 4979 213 41 26 chr11 62803229 62803410 -87980143 - L1MEc LINE L1 -3444 2771 2594 1753 105 16 0 chr11 62803410 62803658 -87979895 - L1PA14 LINE L1 -17 6144 5893 4979 213 41 26 chr11 62803658 62804667 -87978886 - L1MEc LINE L1 -3621 2594 1534 1413 203 55 38 chr11 62804667 62804958 -87978595 - AluJo SINE Alu -16 296 1 4979 213 41 26 chr11 62804958 62805141 -87978412 - L1MEc LINE L1 -4681 1534 1355 744 137 0 89 chr11 62805190 62805336 -87978217 - AluSq/x SINE Alu -179 133 1 1493 223 36 14 chr11 62805349 62805767 -87977786 - L1MEc LINE L1 -5034 1182 756 1662 179 112 0 chr11 62805769 62806127 -87977426 + MSTA LTR MaLR 1 398 -30 1369 39 6 11 chr11 62806128 62806309 -87977244 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1906 128 4 0 chr11 62806309 62806647 -87976906 - AluSx SINE Alu 0 376 38 282 135 0 3 chr11 62806654 62806703 -87976850 + MSTA LTR MaLR 379 428 0 1060 271 25 0 chr11 62806703 62807020 -87976533 - L1MEc LINE L1 -5458 758 434 396 326 85 68 chr11 62807425 62807661 -87975892 - L1 LINE L1 -6062 787 548 964 318 22 15 chr11 62807898 62808300 -87975253 - L1 LINE L1 -6402 447 43 2166 118 3 13 chr11 62808575 62808888 -87974665 - AluSx SINE Alu -2 310 1 415 341 59 28 chr11 62808934 62809324 -87974229 - L1MEc LINE L1 -5960 1069 668 315 214 162 7 chr11 62809400 62809554 -87973999 - MER20B DNA MER1_type -69 714 537 22 56 0 0 chr11 62810184 62810220 -87973333 + AT_rich Low_complexity Low_complexity 1 36 0 27 73 0 0 chr11 62810249 62810304 -87973249 + AT_rich Low_complexity Low_complexity 1 55 0 1398 170 57 133 chr11 62810970 62811297 -87972256 - MLT1C LTR MaLR 0 467 190 2251 112 0 3 chr11 62811297 62811593 -87971960 - AluSx SINE Alu -17 295 1 1398 170 57 133 chr11 62811593 62811770 -87971783 - MLT1C LTR MaLR -277 190 1 556 245 32 19 chr11 62811927 62812082 -87971471 - MIR SINE MIR -3 259 103 309 283 29 36 chr11 62813452 62813590 -87969963 + MLT1L LTR MaLR 142 278 -337 282 325 32 45 chr11 62813740 62813894 -87969659 + L2 LINE L2 2709 2860 -454 770 212 18 22 chr11 62814095 62814321 -87969232 - L1M4 LINE L1 -2259 3887 3663 * 5534 238 63 26 chr11 62814303 62814675 -87968878 - L1M4 LINE L1 -1004 5953 5596 2494 152 23 70 chr11 62814675 62815188 -87968365 + LTR2B LTR ERV1 2 490 0 5534 238 63 26 chr11 62815188 62815251 -87968302 - L1M4 LINE L1 -1361 5596 5537 3424 97 13 0 chr11 62815251 62815667 -87967886 + LTR46 LTR ERV1 1 425 -35 405 0 0 0 chr11 62815667 62815712 -87967841 + (TG)n Simple_repeat Simple_repeat 2 46 0 3424 97 13 0 chr11 62815712 62815749 -87967804 + LTR46 LTR ERV1 425 460 0 5534 238 63 26 chr11 62815749 62817381 -87966172 - L1M4 LINE L1 -1420 5537 3809 3225 242 43 71 chr11 62817409 62819023 -87964530 - L1M4 LINE L1 -4974 1881 1 1550 230 54 39 chr11 62819721 62819961 -87963592 - MLT1C LTR MaLR 0 467 232 1813 156 55 30 chr11 62819961 62820327 -87963226 + THE1C LTR MaLR 1 375 0 9997 117 10 38 chr11 62820329 62821953 -87961600 + THE1C-int LTR MaLR 3 1580 0 1921 132 58 25 chr11 62821953 62822316 -87961237 + THE1C LTR MaLR 1 375 0 1550 230 54 39 chr11 62822316 62822531 -87961022 - MLT1C LTR MaLR -234 233 1 1549 187 25 111 chr11 62822531 62823008 -87960545 - MLT1C-int LTR MaLR 0 1371 936 677 314 57 50 chr11 62823181 62823952 -87959601 - L1M4 LINE L1 -1091 5055 4212 27 62 0 0 chr11 62824142 62824190 -87959363 + AT_rich Low_complexity Low_complexity 1 48 0 22 56 0 0 chr11 62824628 62824664 -87958889 + AT_rich Low_complexity Low_complexity 1 36 0 4291 250 68 39 chr11 62825006 62827467 -87956086 + L1M4b LINE L1 4 2704 -4434 5327 239 51 9 chr11 62827658 62828271 -87955282 + L1M4b LINE L1 2586 3172 -3785 2385 71 0 0 chr11 62828271 62828565 -87954988 + AluY SINE Alu 1 294 -17 5327 239 51 9 chr11 62828565 62829909 -87953644 + L1M4b LINE L1 3172 4592 -2365 12390 136 42 13 chr11 62829914 62830029 -87953524 - Tigger1 DNA MER2_type 0 2418 2308 2387 75 0 3 chr11 62830029 62830323 -87953230 + AluY SINE Alu 1 293 -18 12390 136 42 13 chr11 62830323 62832378 -87951175 - Tigger1 DNA MER2_type -110 2308 185 238 114 0 0 chr11 62832378 62832413 -87951140 - Tigger1 DNA MER2_type -2190 228 194 * 1822 167 27 100 chr11 62832411 62832859 -87950694 - Tigger1 DNA MER2_type -2003 415 1 1148 231 56 16 chr11 62832860 62833237 -87950316 + L1M4b LINE L1 4597 4988 -1969 525 216 22 14 chr11 62833237 62833376 -87950177 - L1 LINE L1 -1185 4961 4822 3983 194 10 7 chr11 62833424 62833775 -87949778 - L1PA16 LINE L1 -10 6156 5808 510 70 0 0 chr11 62833775 62833846 -87949707 + (TA)n Simple_repeat Simple_repeat 2 72 0 3983 194 10 7 chr11 62833846 62834507 -87949046 - L1PA16 LINE L1 -358 5808 5105 2498 207 6 25 chr11 62834508 62835156 -87948397 - L1 LINE L1 -1185 4961 4326 1234 212 6 28 chr11 62835154 62835480 -87948073 + L1MB8 LINE L1 5805 6123 -55 * 2104 137 0 16 chr11 62835675 62835988 -87947565 + AluSx SINE Alu 5 312 0 427 302 40 0 chr11 62836114 62836263 -87947290 + L2 LINE L2 2083 2237 -1077 598 222 16 74 chr11 62836303 62836492 -87947061 + L2 LINE L2 3103 3280 -33 261 0 0 0 chr11 62836495 62836512 -87947041 + (CA)n Simple_repeat Simple_repeat 1 46 0 261 0 0 0 chr11 62836512 62836541 -87947012 + (CA)n Simple_repeat Simple_repeat 2 30 0 189 0 0 0 chr11 62836991 62837012 -87946541 + (A)n Simple_repeat Simple_repeat 1 21 0 1967 149 0 3 chr11 62837334 62837629 -87945924 - AluSx SINE Alu -18 294 1 889 164 72 48 chr11 62837629 62837837 -87945716 - MIR SINE MIR -36 226 14 1585 186 18 4 chr11 62838091 62838371 -87945182 + AluJo SINE Alu 1 284 -28 22 35 0 0 chr11 62838522 62838551 -87945002 + AT_rich Low_complexity Low_complexity 1 29 0 565 263 58 16 chr11 62839465 62839655 -87943898 + MIR SINE MIR 65 262 0 240 193 0 0 chr11 62841655 62841712 -87941841 - MLT2D LTR ERVL 0 520 464 602 131 24 90 chr11 62841759 62842003 -87941550 + MER4A LTR ERV1 149 421 -243 484 239 56 11 chr11 62842024 62842204 -87941349 + MER4C LTR ERV1 277 464 -1 1180 194 14 94 chr11 62842235 62842586 -87940967 - MLT2D LTR ERVL -91 323 1 5772 168 43 6 chr11 62842610 62844200 -87939353 - ERVL-D LTR ERVL -19 5745 4032 1624 91 0 0 chr11 62844200 62844397 -87939156 + AluSx SINE Alu 1 197 -115 5772 168 43 6 chr11 62844397 62844744 -87938809 - ERVL-D LTR ERVL -1732 4032 3699 1752 150 0 17 chr11 62844744 62845037 -87938516 - ERVL LTR ERVL -483 5281 4994 2332 229 36 49 chr11 62846092 62846190 -87937363 + L1 LINE L1 3301 3399 -4166 6945 52 14 3 chr11 62846190 62847135 -87936418 + L1PA6 LINE L1 5202 6154 0 2332 229 36 49 chr11 62847135 62847910 -87935643 + L1 LINE L1 3399 4155 -3410 1543 183 94 27 chr11 62847921 62848292 -87935261 - MSTD LTR MaLR 0 396 1 1688 183 116 5 chr11 62848297 62848668 -87934885 - MSTD-int LTR MaLR -5 1730 1319 3868 156 17 33 chr11 62848715 62848818 -87934735 + L1 LINE L1 5632 5735 -1830 2348 125 0 3 chr11 62848818 62849131 -87934422 + AluSx SINE Alu 1 312 0 3868 156 17 33 chr11 62849131 62849835 -87933718 + L1 LINE L1 5735 6426 -1139 1748 266 103 26 chr11 62849833 62850525 -87933028 - L1M4 LINE L1 -5797 745 1 * 200 280 0 0 chr11 62852503 62852553 -87931000 + MIR SINE MIR 102 151 -111 1736 268 107 37 chr11 62852664 62852889 -87930664 + L1MA10 LINE L1 493 701 -5440 2408 92 0 6 chr11 62852889 62853203 -87930350 + AluSx SINE Alu 1 312 0 1736 268 107 37 chr11 62853203 62853713 -87929840 + L1MA10 LINE L1 701 1280 -4861 * 3729 186 62 49 chr11 62853709 62854588 -87928965 + L1MA10 LINE L1 4471 5337 -1061 2364 166 5 23 chr11 62854588 62855016 -87928537 - L1PB4 LINE L1 -13 6143 5724 3729 186 62 49 chr11 62855016 62855431 -87928122 + L1MA10 LINE L1 5337 5745 -653 261 0 0 0 chr11 62855431 62855460 -87928093 + (TG)n Simple_repeat Simple_repeat 2 30 0 3729 186 62 49 chr11 62855460 62855667 -87927886 + L1MA10 LINE L1 5745 5948 -450 4580 115 13 6 chr11 62855667 62856362 -87927191 - L1PA16 LINE L1 -1 6165 5466 3729 186 62 49 chr11 62856362 62856769 -87926784 + L1MA10 LINE L1 5948 6395 -3 2577 54 0 0 chr11 62857505 62857802 -87925751 - AluY SINE Alu -14 297 1 412 200 0 0 chr11 62858160 62858240 -87925313 - MER116 DNA Mariner 0 80 1 1935 130 6 60 chr11 62858242 62858534 -87925019 + HSMAR2 DNA Mariner 1 273 -1029 1813 151 22 4 chr11 62858534 62858865 -87924688 + AluJb SINE Alu 1 336 0 1935 130 6 60 chr11 62858865 62858924 -87924629 + HSMAR2 DNA Mariner 273 334 -968 23 33 0 0 chr11 62858942 62858972 -87924581 + AT_rich Low_complexity Low_complexity 1 30 0 1404 144 13 28 chr11 62858972 62859331 -87924222 - L1PB3 LINE L1 -7 6147 5731 2838 86 91 9 chr11 62859331 62859750 -87923803 - MLT2A2 LTR ERVL 0 453 1 1404 144 13 28 chr11 62859750 62860028 -87923525 - L1PB3 LINE L1 -423 5731 5450 * 8981 223 43 34 chr11 62860027 62860668 -87922885 - L1M2b LINE L1 -1518 5690 5056 1660 119 6 110 chr11 62860668 62860996 -87922557 - AluSq SINE Alu -19 294 1 8981 223 43 34 chr11 62860996 62861739 -87921814 - L1M2b LINE L1 -2152 5056 4321 2569 31 0 59 chr11 62861739 62862062 -87921491 - AluY SINE Alu -7 304 1 8981 223 43 34 chr11 62862062 62862329 -87921224 - L1M2b LINE L1 -2887 4321 4058 2312 121 0 0 chr11 62862329 62862634 -87920919 - AluSx SINE Alu -7 305 1 8981 223 43 34 chr11 62862634 62863936 -87919617 - L1M2b LINE L1 -3150 4058 2769 2029 162 0 0 chr11 62863936 62864245 -87919308 - AluSx SINE Alu -3 309 1 8981 223 43 34 chr11 62864245 62866001 -87917552 - L1M2b LINE L1 -4439 2769 444 1544 323 50 54 chr11 62866377 62867927 -87915626 - L1PBa LINE L1 -5419 1443 3 6711 121 18 3 chr11 62867941 62868914 -87914639 + HSMAR2 DNA Mariner 315 1301 -1 29 94 0 0 chr11 62869054 62869139 -87914414 + AT_rich Low_complexity Low_complexity 1 85 0 214 343 0 14 chr11 62870587 62870657 -87912896 - L2 LINE L2 -3 3269 3201 309 282 35 0 chr11 62871517 62871602 -87911951 + MER69 DNA AcHobo 1 88 -2438 661 310 63 6 chr11 62871610 62871958 -87911595 - L1M4 LINE L1 -1930 4216 3849 2475 236 76 18 chr11 62872001 62872688 -87910865 - L1ME3A LINE L1 -53 6117 5391 3658 170 55 8 chr11 62872750 62873220 -87910333 - L1MA9 LINE L1 -39 6273 5756 345 47 0 0 chr11 62873220 62873263 -87910290 + (TG)n Simple_repeat Simple_repeat 2 44 0 3658 170 55 8 chr11 62873263 62873517 -87910036 - L1MA9 LINE L1 -556 5756 5515 652 298 72 27 chr11 62873520 62874227 -87909326 - L1ME3A LINE L1 -748 5398 4618 2351 98 0 0 chr11 62874230 62874526 -87909027 - AluSc SINE Alu -13 296 1 337 164 123 27 chr11 62874534 62874607 -87908946 - L1MC2 LINE L1 -22 6322 6243 * 4481 206 33 18 chr11 62874604 62875771 -87907782 - L1PA13 LINE L1 -3732 3065 1830 6516 73 16 48 chr11 62875771 62876756 -87906797 - SVA Other Other 0 1386 433 5894 95 31 37 chr11 62876773 62878090 -87905463 - SVA Other Other -518 868 1 361 351 0 15 chr11 62878930 62879061 -87904492 - LTR67 LTR ERVL -356 201 73 21 0 0 0 chr11 62879424 62879445 -87904108 + AT_rich Low_complexity Low_complexity 1 21 0 255 189 19 0 chr11 62879543 62879596 -87903957 + MLT1K LTR MaLR 517 570 -18 6180 112 29 24 chr11 62880223 62881164 -87902389 + LTR13 LTR ERVK 1 945 -62 2237 121 7 0 chr11 62881266 62881564 -87901989 - AluSg SINE Alu -10 300 1 187 213 0 21 chr11 62881850 62881897 -87901656 - MIR SINE MIR -103 159 114 689 255 54 20 chr11 62882750 62882954 -87900599 - MIR SINE MIR -51 211 1 1124 112 0 0 chr11 62884161 62884331 -87899222 + L1PA13 LINE L1 5994 6163 0 288 211 44 61 chr11 62884715 62884829 -87898724 - MIR SINE MIR -58 204 93 1149 301 86 10 chr11 62884989 62885395 -87898158 - LTR16C LTR ERVL -2 489 53 297 124 186 113 chr11 62886193 62886290 -87897263 - LTR16C LTR ERVL 0 491 388 * 922 245 21 0 chr11 62886263 62886455 -87897098 - LTR16C LTR ERVL -234 257 62 828 243 90 39 chr11 62886851 62887325 -87896228 - MLT1H LTR MaLR 0 549 12 711 238 140 43 chr11 62888752 62889151 -87894402 - MLT1H LTR MaLR -3 546 109 2434 205 68 6 chr11 62890037 62890773 -87892780 + L1MD2 LINE L1 5052 5834 -525 917 267 74 27 chr11 62890998 62891458 -87892095 - MER34B LTR ERV1 -59 506 1 500 208 85 15 chr11 62891458 62891588 -87891965 + L1MD2 LINE L1 5833 5971 -388 2030 121 10 27 chr11 62891609 62891907 -87891646 + AluSq SINE Alu 1 293 -20 336 175 0 0 chr11 62891910 62891973 -87891580 + GA-rich Low_complexity Low_complexity 2 64 0 460 192 70 58 chr11 62891973 62892129 -87891424 + L1MC5 LINE L1 6893 7050 -911 1167 244 127 22 chr11 62892380 62892790 -87890763 - MLT1H LTR MaLR -5 544 92 459 345 0 0 chr11 62893002 62893150 -87890403 + (CA)n Simple_repeat Simple_repeat 1 148 0 383 280 10 3 chr11 62893188 62893497 -87890056 + (CA)n Simple_repeat Simple_repeat 1 311 0 284 295 54 7 chr11 62893666 62893815 -87889738 + MIR3 SINE MIR 50 205 -3 204 322 35 0 chr11 62894517 62894604 -87888949 - MIR3 SINE MIR -25 183 94 425 226 48 68 chr11 62894962 62895108 -87888445 - MIR SINE MIR -118 144 2 394 148 23 34 chr11 62895322 62895410 -87888143 + MIR SINE MIR 90 176 -86 261 205 39 51 chr11 62895445 62895523 -87888030 - MIR SINE MIR -24 238 162 2306 90 21 0 chr11 62897215 62897505 -87886048 - AluSg SINE Alu -14 296 1 280 341 26 2 chr11 62897783 62897916 -87885637 + MIR SINE MIR 32 165 -68 1348 159 31 128 chr11 62898120 62898509 -87885044 - MLT1A1 LTR MaLR -12 353 3 219 287 89 40 chr11 62898705 62898806 -87884747 + L2 LINE L2 3204 3309 -4 205 169 102 17 chr11 62898821 62898880 -87884673 + L2 LINE L2 3183 3246 -67 1033 271 107 10 chr11 62898898 62899208 -87884345 - MLT1I LTR MaLR 0 409 70 327 298 122 19 chr11 62899276 62899481 -87884072 + MIR SINE MIR 27 252 -10 2142 137 3 0 chr11 62899567 62899866 -87883687 + AluSx SINE Alu 1 300 -12 654 113 21 0 chr11 62900176 62900273 -87883280 - MSTD LTR MaLR -7 389 291 294 140 0 0 chr11 62900280 62900330 -87883223 - MIR SINE MIR -3 259 210 953 207 5 64 chr11 62900333 62900394 -87883159 + MER58A DNA MER1_type 3 66 -2354 1741 163 10 17 chr11 62900394 62900695 -87882858 - AluJb SINE Alu -11 301 3 953 207 5 64 chr11 62900695 62900836 -87882717 + MER58A DNA MER1_type 66 193 -31 463 114 0 0 chr11 62900837 62900907 -87882646 - Alu SINE Alu -5 307 238 348 234 121 8 chr11 62901362 62901486 -87882067 + MIR SINE MIR 46 183 -79 2173 71 30 0 chr11 62902198 62902466 -87881087 + AluY SINE Alu 1 276 -35 5416 81 49 10 chr11 62902572 62903352 -87880201 - SVA Other Other -539 847 38 246 32 0 0 chr11 62903357 62903388 -87880165 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 1293 111 0 0 chr11 62903955 62904127 -87879426 + AluSg/x SINE Alu 126 297 -15 225 306 38 75 chr11 62904247 62904407 -87879146 + MIR3 SINE MIR 48 201 -7 2085 109 32 67 chr11 62904618 62904994 -87878559 + THE1B LTR MaLR 2 364 0 244 266 31 70 chr11 62905011 62905127 -87878426 + LTR33 LTR ERVL 1 113 -408 996 172 25 0 chr11 62905127 62905290 -87878263 - FAM SINE Alu -8 167 1 244 266 31 70 chr11 62905290 62905301 -87878252 + LTR33 LTR ERVL 113 123 -398 1092 128 17 0 chr11 62906005 62906177 -87877376 + AluSg/x SINE Alu 129 303 -9 229 281 24 0 chr11 62907977 62908059 -87875494 + (CA)n Simple_repeat Simple_repeat 2 85 0 312 172 0 0 chr11 62908327 62908385 -87875168 + MIR SINE MIR 61 118 -90 832 189 41 0 chr11 62908673 62908842 -87874711 - MER20B DNA MER1_type 0 219 44 2181 104 16 0 chr11 62909307 62909614 -87873939 - AluSx SINE Alu 0 312 1 305 303 106 53 chr11 62909969 62910119 -87873434 + MIR SINE MIR 20 185 -77 2051 133 0 7 chr11 62910119 62910420 -87873133 + AluSx SINE Alu 1 299 -13 305 303 106 53 chr11 62910420 62910477 -87873076 + MIR SINE MIR 185 238 -24 531 275 215 0 chr11 62910512 62910712 -87872841 + MIR SINE MIR 17 259 -3 1270 226 55 63 chr11 62910834 62910925 -87872628 + MLT2C1 LTR ERVL 1 91 -306 2246 92 0 3 chr11 62910925 62911228 -87872325 + AluSg SINE Alu 1 302 -8 1270 226 55 63 chr11 62911228 62911534 -87872019 + MLT2C1 LTR ERVL 91 395 -2 196 333 198 5 chr11 62911809 62912001 -87871552 + L2 LINE L2 3084 3312 -1 310 320 78 7 chr11 62912264 62912417 -87871136 + MIR3 SINE MIR 34 197 -11 2212 102 0 6 chr11 62912591 62912906 -87870647 - AluSq SINE Alu 0 313 1 374 235 20 10 chr11 62912982 62913080 -87870473 - L1MB8 LINE L1 -63 6115 6017 585 170 45 209 chr11 62913080 62913198 -87870355 + MER113 DNA MER1_type? 106 242 -279 1747 88 0 0 chr11 62913198 62913425 -87870128 + AluY SINE Alu 84 310 -1 585 170 45 209 chr11 62913425 62913601 -87869952 + MER113 DNA MER1_type? 242 333 -188 2255 72 0 0 chr11 62913601 62913913 -87869640 + AluY SINE Alu 1 311 0 585 170 45 209 chr11 62913913 62913975 -87869578 + MER113 DNA MER1_type? 333 404 -117 444 270 58 7 chr11 62914028 62914165 -87869388 - MIR SINE MIR -54 208 65 666 276 123 15 chr11 62914981 62915406 -87868147 + L1MC4 LINE L1 7329 7910 -132 264 248 88 15 chr11 62915467 62915604 -87867949 + L1MC4 LINE L1 7896 8042 0 1638 181 17 7 chr11 62915649 62915942 -87867611 + AluJo SINE Alu 6 301 -11 2217 107 0 7 chr11 62915942 62916252 -87867301 + AluSg SINE Alu 1 308 -2 393 297 14 48 chr11 62916587 62916732 -87866821 - MIR3 SINE MIR -63 145 6 2168 107 3 0 chr11 62916755 62917054 -87866499 + AluSg SINE Alu 1 300 -10 2045 121 0 0 chr11 62917382 62917709 -87865844 + AluSx SINE Alu 1 327 0 427 255 125 47 chr11 62917933 62918125 -87865428 + MIR SINE MIR 46 252 -10 467 319 11 0 chr11 62918126 62918308 -87865245 - L2 LINE L2 -313 3000 2817 308 284 113 10 chr11 62918314 62918518 -87865035 - MER113 DNA MER1_type? -291 230 6 264 333 27 27 chr11 62918637 62918748 -87864805 - MIR3 SINE MIR -10 198 88 224 306 159 13 chr11 62919629 62919786 -87863767 + MIR3 SINE MIR 15 194 -14 497 272 45 40 chr11 62919936 62920073 -87863480 + MIR SINE MIR 60 200 -62 1887 206 121 28 chr11 62920073 62920535 -87863018 + MLT1D LTR MaLR 1 505 0 497 272 45 40 chr11 62920535 62920599 -87862954 + MIR SINE MIR 200 262 0 190 217 108 24 chr11 62920622 62920705 -87862848 + MIR3 SINE MIR 116 205 -3 27 29 0 0 chr11 62920968 62921002 -87862551 + AT_rich Low_complexity Low_complexity 1 34 0 361 311 78 6 chr11 62921093 62921247 -87862306 + MIR SINE MIR 14 184 -78 2009 125 0 10 chr11 62921247 62921542 -87862011 + AluSx SINE Alu 1 292 -20 361 311 78 6 chr11 62921542 62921567 -87861986 + MIR SINE MIR 184 206 -56 233 29 29 0 chr11 62921602 62921636 -87861917 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 244 267 17 0 chr11 62922433 62922493 -87861060 + L2 LINE L2 3203 3263 -50 228 236 56 14 chr11 62922562 62922634 -87860919 - MIR3 SINE MIR -30 178 104 291 341 0 11 chr11 62922714 62922805 -87860748 + (TG)n Simple_repeat Simple_repeat 1 90 0 2059 94 0 63 chr11 62922852 62923171 -87860382 + AluSq SINE Alu 5 303 -10 378 319 29 7 chr11 62923398 62923536 -87860017 + MIR3 SINE MIR 23 163 -45 200 277 42 84 chr11 62925265 62925384 -87858169 + L2 LINE L2 1385 1498 -1816 189 227 242 0 chr11 62925995 62926061 -87857492 - L2 LINE L2 -2 3270 3189 835 253 80 8 chr11 62928049 62928286 -87855267 - MIR SINE MIR -8 254 1 405 280 150 30 chr11 62928831 62929031 -87854522 - MIR SINE MIR -18 244 21 280 386 45 17 chr11 62929405 62929581 -87853972 + L3 LINE CR1 1371 1551 -26 339 250 179 14 chr11 62929631 62929771 -87853782 - MER103 DNA DNA -1 165 3 270 0 0 0 chr11 62929777 62929807 -87853746 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2205 87 3 0 chr11 62929810 62930097 -87853456 - AluSp SINE Alu -25 288 1 234 156 67 0 chr11 62930263 62930308 -87853245 + L3 LINE CR1 1513 1560 -17 283 294 122 22 chr11 62930879 62931059 -87852494 + MIR SINE MIR 57 254 -8 384 119 0 0 chr11 62931620 62931679 -87851874 + (TG)n Simple_repeat Simple_repeat 1 59 0 259 185 185 0 chr11 62931937 62932018 -87851535 + MIR SINE MIR 35 130 -78 350 241 9 46 chr11 62932126 62932234 -87851319 + LTR16A1 LTR ERVL 7 110 -347 514 253 139 21 chr11 62932793 62933030 -87850523 - L1MC5 LINE L1 -37 7924 7660 1590 161 63 23 chr11 62933134 62933433 -87850120 + AluJo SINE Alu 1 311 -1 1985 161 12 26 chr11 62933459 62933801 -87849752 - MER1B DNA MER1_type 0 337 1 254 272 12 0 chr11 62933872 62933953 -87849600 - L1MC5 LINE L1 -323 7638 7557 941 227 58 4 chr11 62934715 62934940 -87848613 + MIR SINE MIR 3 239 -23 393 272 44 0 chr11 62935351 62935465 -87848088 - L2 LINE L2 0 3272 3154 1205 178 119 9 chr11 62935466 62935875 -87847678 + MLT1D LTR MaLR 1 503 -2 385 314 130 63 chr11 62935961 62936799 -87846754 - L2 LINE L2 -181 3091 2196 247 253 232 0 chr11 62936781 62936876 -87846677 + L2 LINE L2 3195 3311 -2 * 2177 241 43 14 chr11 62937249 62937760 -87845793 + MLT1E LTR MaLR 68 593 0 2772 227 80 20 chr11 62937808 62938581 -87844972 - L1ME3 LINE L1 -22 6140 5415 1883 143 0 14 chr11 62938581 62938908 -87844645 - AluSx SINE Alu 0 323 1 2772 227 80 20 chr11 62938908 62939738 -87843815 - L1ME3 LINE L1 -747 5415 4451 347 211 145 0 chr11 62940468 62940544 -87843009 - MER96 DNA MER1_type? -83 92 6 524 279 7 7 chr11 62940777 62940913 -87842640 + MIR SINE MIR 13 148 -114 233 269 26 26 chr11 62941523 62941601 -87841952 - MIR3 SINE MIR -24 184 107 187 255 153 0 chr11 62941605 62941703 -87841850 + MIR3 SINE MIR 5 117 -91 372 267 17 17 chr11 62942367 62942483 -87841070 - L2 LINE L2 -5 3308 3193 2419 77 0 3 chr11 62942487 62942799 -87840754 - AluSq SINE Alu -2 311 1 1573 169 20 30 chr11 62943401 62943702 -87839851 - AluJo SINE Alu -14 298 1 180 0 0 0 chr11 62943856 62943876 -87839677 + (TGGGGG)n Simple_repeat Simple_repeat 6 25 0 273 239 65 0 chr11 62944065 62944157 -87839396 - MIR3 SINE MIR -107 101 4 428 260 81 0 chr11 62945277 62945400 -87838153 - L2 LINE L2 0 3272 3140 208 336 153 5 chr11 62945418 62945641 -87837912 + L2 LINE L2 2638 2893 -421 374 234 33 140 chr11 62946796 62946840 -87836713 - L2 LINE L2 -3 3310 3263 1934 125 0 3 chr11 62946840 62947128 -87836425 + AluSx SINE Alu 15 301 -11 374 234 33 140 chr11 62947128 62947211 -87836342 - L2 LINE L2 -50 3263 3213 2248 102 0 0 chr11 62947211 62947515 -87836038 - AluSg SINE Alu -6 304 1 374 234 33 140 chr11 62947515 62947600 -87835953 - L2 LINE L2 -100 3213 3120 644 298 80 42 chr11 62947964 62948300 -87835253 - L2 LINE L2 -723 2591 2243 242 300 0 0 chr11 62948309 62948369 -87835184 - MIR SINE MIR -67 141 82 344 320 27 47 chr11 62949138 62949288 -87834265 - MIR SINE MIR -93 169 23 2308 84 0 0 chr11 62949628 62949925 -87833628 - AluSx SINE Alu -15 297 1 236 266 16 0 chr11 62951008 62951072 -87832481 - L3 LINE CR1 -126 1451 1387 632 245 21 27 chr11 62951346 62951429 -87832124 - MIR SINE MIR -15 247 165 2094 112 0 0 chr11 62951429 62951738 -87831815 - AluSq SINE Alu 0 309 1 632 245 21 27 chr11 62951738 62951841 -87831712 - MIR SINE MIR -97 165 61 551 351 49 12 chr11 62952155 62952400 -87831153 + MIR SINE MIR 8 261 -1 658 265 28 88 chr11 62952539 62952907 -87830646 + MER57A LTR ERV1 43 383 -20 2178 113 0 0 chr11 62952907 62953208 -87830345 - AluSg SINE Alu -9 301 1 658 265 28 88 chr11 62953208 62953227 -87830326 + MER57A LTR ERV1 383 402 -1 457 329 142 19 chr11 62953342 62953760 -87829793 + L2 LINE L2 2779 3247 -66 388 307 29 22 chr11 62954254 62954391 -87829162 - MIR SINE MIR -124 138 1 334 280 20 0 chr11 62954438 62954538 -87829015 - MIR SINE MIR -90 118 17 651 364 24 26 chr11 62955407 62955907 -87827646 - HERVK22 LTR ERVK -316 6521 6023 294 281 62 82 chr11 62957063 62957451 -87826102 - HERVK22 LTR ERVK -2227 4610 4231 4013 191 29 59 chr11 62957731 62958729 -87824824 - LTR5 LTR ERVK -1 968 1 283 287 0 75 chr11 62958838 62959026 -87824527 - HERVK22 LTR ERVK -2962 3875 3702 377 264 36 36 chr11 62959383 62959550 -87824003 - HERVK22 LTR ERVK -5603 1234 1068 263 370 8 8 chr11 62959798 62959917 -87823636 - HERVK22 LTR ERVK -6016 821 703 26 0 0 0 chr11 62961203 62961229 -87822324 + AT_rich Low_complexity Low_complexity 1 26 0 2347 112 0 3 chr11 62961260 62961563 -87821990 - AluSx SINE Alu -10 302 1 389 240 0 0 chr11 62961565 62961640 -87821913 - Tigger7 DNA MER2_type -264 75 1 2157 138 0 0 chr11 62961761 62962052 -87821501 - AluSx SINE Alu -21 291 1 313 243 4 4 chr11 62962845 62962946 -87820607 + MIR SINE MIR 84 146 -62 606 283 60 0 chr11 62963680 62963846 -87819707 - MIR SINE MIR -74 188 13 1644 164 0 33 chr11 62964685 62964959 -87818594 - AluJo SINE Alu -14 298 34 617 209 0 22 chr11 62965087 62965221 -87818332 + FLAM_A SINE Alu 1 131 -2 1715 187 106 31 chr11 62965794 62966158 -87817395 + MLT1C LTR MaLR 3 405 -62 2091 113 58 0 chr11 62966158 62966450 -87817103 - AluSq SINE Alu -4 309 1 1715 187 106 31 chr11 62966450 62966508 -87817045 + MLT1C LTR MaLR 405 457 -10 753 171 0 38 chr11 62967089 62967247 -87816306 - LTR7 LTR ERV1 0 450 299 794 124 93 11 chr11 62967474 62967631 -87815922 - LTR7 LTR ERV1 -232 218 1 1177 85 0 0 chr11 62967749 62967890 -87815663 + AluSq/x SINE Alu 2 142 -170 363 267 105 52 chr11 62967920 62968016 -87815537 - MER5A DNA MER1_type 0 189 99 2304 92 0 23 chr11 62968016 62968350 -87815203 - AluSc SINE Alu 0 327 1 1271 173 9 146 chr11 62968354 62968696 -87814857 - AluSx SINE Alu -17 295 1 363 267 105 52 chr11 62968696 62968765 -87814788 - MER5A DNA MER1_type -92 97 9 376 295 24 0 chr11 62968767 62968882 -87814671 - MIR SINE MIR -61 147 44 234 306 88 14 chr11 62969508 62969655 -87813898 - MIR3 SINE MIR -18 190 33 209 224 61 0 chr11 62970966 62971015 -87812538 + MIR SINE MIR 95 146 -62 457 291 16 8 chr11 62971380 62971507 -87812046 - MIR SINE MIR -115 147 20 193 316 13 13 chr11 62971704 62971780 -87811773 - MIR SINE MIR -109 99 24 203 136 0 45 chr11 62971816 62971860 -87811693 + (CAAAAA)n Simple_repeat Simple_repeat 3 44 0 417 298 15 7 chr11 62972126 62972273 -87811280 + MER5A DNA MER1_type 3 161 -28 427 300 38 6 chr11 62972408 62972568 -87810985 + MIR SINE MIR 95 259 -3 546 244 81 35 chr11 62973145 62973342 -87810211 + MIR3 SINE MIR 2 207 -1 21 0 0 0 chr11 62973364 62973385 -87810168 + AT_rich Low_complexity Low_complexity 1 21 0 187 196 65 0 chr11 62973583 62973629 -87809924 + MIR SINE MIR 105 153 -55 743 141 8 31 chr11 62973796 62973924 -87809629 - FLAM_A SINE Alu -5 128 4 495 245 38 19 chr11 62974351 62974510 -87809043 + MIR3 SINE MIR 45 206 -2 516 210 6 57 chr11 62974520 62974677 -87808876 - L1M4 LINE L1 -3062 3084 2936 182 214 0 0 chr11 62974683 62974725 -87808828 - MIR SINE MIR -64 144 103 2908 28 0 6 chr11 62975015 62975335 -87808218 - SVA Other Other 0 1386 1069 1532 62 0 0 chr11 62975335 62975536 -87808017 + AluY SINE Alu 107 307 0 647 216 38 54 chr11 62976185 62976370 -87807183 + MIR SINE MIR 80 261 -1 346 213 59 24 chr11 62977054 62977184 -87806369 - MIR SINE MIR -50 158 20 22 0 0 0 chr11 62977786 62977808 -87805745 + AT_rich Low_complexity Low_complexity 1 22 0 347 233 36 35 chr11 62977809 62977923 -87805630 + MIR3 SINE MIR 15 128 -100 815 123 0 36 chr11 62979224 62979362 -87804191 + AluSg/x SINE Alu 160 292 -17 4896 118 67 30 chr11 62979383 62979402 -87804151 + Tigger3b DNA MER2_type 258 275 -2753 13899 125 37 17 chr11 62979402 62979518 -87804035 - Tigger1 DNA MER2_type 0 2418 2306 1653 133 141 0 chr11 62979518 62979773 -87803780 + AluJb SINE Alu 1 291 -21 13899 125 37 17 chr11 62979773 62982027 -87801526 - Tigger1 DNA MER2_type -112 2306 2 4896 118 67 30 chr11 62982027 62982229 -87801324 + Tigger3b DNA MER2_type 275 468 -2560 2261 109 50 6 chr11 62982229 62982588 -87800965 + THE1C LTR MaLR 1 375 0 4896 118 67 30 chr11 62982588 62983301 -87800252 + Tigger3b DNA MER2_type 468 1228 -3 433 193 93 71 chr11 62983307 62983447 -87800106 + LTR48 LTR ERV1 613 755 -32 227 235 59 78 chr11 62983460 62983562 -87799991 - MIR SINE MIR -155 107 8 200 186 47 81 chr11 62984546 62984632 -87798921 + L2 LINE L2 3189 3271 -1 21 36 0 0 chr11 62984640 62984668 -87798885 + AT_rich Low_complexity Low_complexity 1 28 0 458 210 100 0 chr11 62985441 62985541 -87798012 + MER3 DNA MER1_type 100 209 0 509 266 21 10 chr11 62987481 62987686 -87795867 - MIR SINE MIR -21 241 34 567 335 5 5 chr11 62987962 62988147 -87795406 - MIR SINE MIR -65 197 13 228 244 26 51 chr11 62989040 62989118 -87794435 - MIR SINE MIR -13 249 174 * 457 274 43 0 chr11 62989096 62989213 -87794340 - L2 LINE L2 0 3313 3192 209 170 21 0 chr11 62989940 62989987 -87793566 - L2 LINE L2 -2 3311 3264 3400 167 64 11 chr11 62990228 62990867 -87792686 - MER21B LTR ERV1 -127 736 64 24 0 0 0 chr11 62990887 62990911 -87792642 + AT_rich Low_complexity Low_complexity 1 24 0 234 245 106 32 chr11 62990917 62991011 -87792542 - MIR SINE MIR -11 251 151 406 306 31 42 chr11 62991429 62991622 -87791931 + MIR SINE MIR 20 210 -52 318 314 51 7 chr11 62993696 62993833 -87789720 + MIR SINE MIR 1 143 -119 23 0 0 0 chr11 62994279 62994302 -87789251 + AT_rich Low_complexity Low_complexity 1 23 0 608 155 68 0 chr11 62994302 62994405 -87789148 - FLAM_C SINE Alu -25 118 9 258 324 135 0 chr11 62994975 62995123 -87788430 - MIR SINE MIR -72 190 23 238 233 120 113 chr11 62995749 62995882 -87787671 + MER94 DNA DNA 1 134 0 232 286 43 0 chr11 62996202 62996272 -87787281 - MIR SINE MIR -175 87 15 491 226 98 0 chr11 62997441 62997574 -87785979 + MIR3 SINE MIR 38 183 -25 221 316 61 10 chr11 62997690 62997788 -87785765 - MIR SINE MIR -113 149 47 263 272 107 29 chr11 62997950 62998053 -87785500 - MIR SINE MIR -53 155 45 2158 135 3 3 chr11 62998154 62998465 -87785088 + AluSx SINE Alu 1 311 -1 2086 150 27 19 chr11 62998468 62998835 -87784718 - MSTB LTR MaLR -56 370 1 280 307 70 9 chr11 62998876 62998990 -87784563 + L2 LINE L2 3124 3244 -28 571 275 87 14 chr11 62999007 62999214 -87784339 + MIR SINE MIR 30 251 -11 1157 177 120 79 chr11 62999222 62999348 -87784205 + AluJo SINE Alu 2 121 -191 2395 100 0 0 chr11 62999348 62999647 -87783906 + AluSx SINE Alu 6 304 -8 1157 177 120 79 chr11 62999647 62999786 -87783767 + AluJo SINE Alu 121 278 -34 267 93 0 0 chr11 62999786 62999829 -87783724 + (GA)n Simple_repeat Simple_repeat 1 43 0 442 275 84 22 chr11 62999858 63000036 -87783517 - L2 LINE L2 -8 3305 3117 991 220 14 9 chr11 63000106 63000324 -87783229 - MER20 DNA MER1_type 0 219 1 1163 239 96 55 chr11 63000340 63000817 -87782736 + MLT1D LTR MaLR 9 505 0 1317 152 13 8 chr11 63000883 63001120 -87782433 - MER39B LTR ERV1 0 653 416 187 204 68 0 chr11 63001337 63001381 -87782172 + MIR SINE MIR 95 141 -67 457 291 16 8 chr11 63001756 63001883 -87781670 - MIR SINE MIR -115 147 20 193 316 13 13 chr11 63002080 63002156 -87781397 - MIR SINE MIR -109 99 24 203 136 0 45 chr11 63002192 63002236 -87781317 + (CAAAAA)n Simple_repeat Simple_repeat 3 44 0 417 298 15 7 chr11 63002502 63002649 -87780904 + MER5A DNA MER1_type 3 161 -28 427 300 38 6 chr11 63002784 63002944 -87780609 + MIR SINE MIR 95 259 -3 546 244 81 35 chr11 63003521 63003718 -87779835 + MIR3 SINE MIR 2 207 -1 21 0 0 0 chr11 63003740 63003761 -87779792 + AT_rich Low_complexity Low_complexity 1 21 0 195 251 42 15 chr11 63003933 63004007 -87779546 + MIR SINE MIR 78 150 -58 201 121 0 0 chr11 63004397 63004430 -87779123 + L2 LINE L2 3194 3226 -87 475 244 143 0 chr11 63004461 63004623 -87778930 + MIR SINE MIR 16 197 -59 1904 110 11 11 chr11 63006358 63006621 -87776932 - AluSx SINE Alu -15 297 35 456 136 178 0 chr11 63006621 63006739 -87776814 + Tigger7 DNA MER2_type 2370 2508 -79 971 231 0 0 chr11 63006767 63006962 -87776591 + MIR SINE MIR 11 205 -57 780 184 0 0 chr11 63008152 63008277 -87775276 - FRAM SINE Alu -33 143 19 333 182 0 0 chr11 63009314 63009369 -87774184 + Tigger5 DNA MER2_type 1 55 -2268 * 404 151 14 14 chr11 63009338 63009411 -87774142 + Tigger5 DNA MER2_type 2251 2323 0 1658 240 64 79 chr11 63009696 63010098 -87773455 - MLT1G1 LTR MaLR -9 586 194 1415 173 79 29 chr11 63010098 63010227 -87773326 + AluJo SINE Alu 1 122 -180 189 0 0 0 chr11 63010227 63010248 -87773305 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1415 173 79 29 chr11 63010248 63010395 -87773158 + AluJo SINE Alu 122 291 -11 1658 240 64 79 chr11 63010395 63010587 -87772966 - MLT1G1 LTR MaLR -401 194 1 530 267 132 8 chr11 63010884 63011069 -87772484 + MIR SINE MIR 3 208 -54 377 323 46 31 chr11 63012063 63012258 -87771295 + MIR SINE MIR 6 203 -59 287 313 99 23 chr11 63012244 63012375 -87771178 + L2 LINE L2 3173 3313 0 * 491 259 106 29 chr11 63012463 63012537 -87771016 + MER5A DNA MER1_type 4 71 -118 2304 88 3 0 chr11 63012537 63012842 -87770711 + AluSx SINE Alu 3 308 -4 491 259 106 29 chr11 63012842 63012937 -87770616 + MER5A DNA MER1_type 71 186 -3 322 310 200 49 chr11 63013629 63014074 -87769479 + L3 LINE CR1 795 1306 -271 236 346 44 39 chr11 63014227 63014409 -87769144 + MIR SINE MIR 28 210 -52 204 269 19 0 chr11 63014461 63014513 -87769040 + MIR SINE MIR 206 258 -4 239 328 143 0 chr11 63015189 63015308 -87768245 + MIR SINE MIR 9 144 -118 846 218 4 71 chr11 63015318 63015424 -87768129 + MIR SINE MIR 17 102 -160 2060 125 0 10 chr11 63015424 63015727 -87767826 - AluSx SINE Alu -12 300 1 846 218 4 71 chr11 63015727 63015845 -87767708 + MIR SINE MIR 102 226 -36 671 268 88 32 chr11 63015866 63016116 -87767437 - LTR16C LTR ERVL 0 491 228 1782 139 36 16 chr11 63016143 63016446 -87767107 + AluJb SINE Alu 1 309 -3 212 195 70 117 chr11 63017864 63017992 -87765561 - MIR SINE MIR -69 139 18 319 326 0 0 chr11 63019571 63019657 -87763896 - MIR SINE MIR -60 202 117 199 286 0 0 chr11 63019804 63019853 -87763700 + L2 LINE L2 3264 3312 -1 226 333 163 0 chr11 63020007 63020142 -87763411 - MIR SINE MIR -24 238 82 594 302 90 51 chr11 63020589 63021000 -87762553 + L2 LINE L2 2848 3274 -39 713 304 143 6 chr11 63021085 63021619 -87761934 - L2 LINE L2 -75 3238 2620 287 283 69 50 chr11 63021925 63022084 -87761469 - MIR SINE MIR -57 205 44 1182 190 0 9 chr11 63022100 63022311 -87761242 - MER3 DNA MER1_type 0 209 1 303 333 98 37 chr11 63022638 63022754 -87760799 - L1MC4 LINE L1 0 8042 7935 2464 74 3 0 chr11 63022754 63023066 -87760487 - AluSp SINE Alu 0 313 1 303 333 98 37 chr11 63023066 63023195 -87760358 - L1MC4 LINE L1 -107 7935 7782 1908 125 3 72 chr11 63023264 63023599 -87759954 - AluSx SINE Alu 0 312 1 293 291 39 0 chr11 63023628 63023731 -87759822 + L3 LINE CR1 1375 1481 -96 424 266 101 0 chr11 63023766 63023905 -87759648 + MIR SINE MIR 23 175 -87 584 332 64 0 chr11 63025446 63025633 -87757920 - MIR SINE MIR -35 227 29 545 235 125 20 chr11 63027140 63027340 -87756213 - L2 LINE L2 -15 3298 3078 339 294 48 8 chr11 63028034 63028160 -87755393 + MIR SINE MIR 45 175 -87 372 278 173 19 chr11 63028389 63028551 -87755002 + MER5A DNA MER1_type 3 189 0 234 229 49 0 chr11 63028578 63028639 -87754914 - MER5B DNA MER1_type -26 152 89 650 216 38 54 chr11 63030077 63030262 -87753291 + MIR SINE MIR 80 261 -1 349 217 66 23 chr11 63030946 63031086 -87752467 - MIR SINE MIR -50 158 8 360 233 36 35 chr11 63031701 63031815 -87751738 + MIR3 SINE MIR 15 128 -100 249 329 131 0 chr11 63032649 63032786 -87750767 + MIR SINE MIR 94 248 -14 1759 115 0 35 chr11 63032869 63033156 -87750397 + AluSx SINE Alu 36 312 0 436 223 11 0 chr11 63033765 63033859 -87749694 + MIR SINE MIR 14 108 -154 352 261 36 97 chr11 63033927 63034122 -87749431 - MER91A DNA MER1_type -13 183 1 606 309 44 84 chr11 63035265 63035718 -87747835 + L2 LINE L2 2838 3272 0 2255 97 0 0 chr11 63035787 63036096 -87747457 - AluSx SINE Alu -3 309 1 1101 241 111 42 chr11 63036291 63036723 -87746830 - MLT1C LTR MaLR 0 467 6 2192 111 3 0 chr11 63036742 63037048 -87746505 + AluSx SINE Alu 3 309 -3 709 297 29 13 chr11 63037049 63037288 -87746265 - MIR SINE MIR 0 262 20 192 339 0 0 chr11 63037608 63037670 -87745883 - MIR SINE MIR -83 179 118 2450 65 3 0 chr11 63037676 63037984 -87745569 + AluY SINE Alu 3 311 0 950 104 0 22 chr11 63038071 63038205 -87745348 + FLAM_C SINE Alu 1 131 -2 782 263 29 0 chr11 63038293 63038502 -87745051 - MIR SINE MIR -2 260 46 2379 206 125 90 chr11 63038911 63039213 -87744340 + L1MC4 LINE L1 7098 7388 -654 1768 150 31 107 chr11 63039213 63039387 -87744166 + MLT1B LTR MaLR 4 190 -200 2062 122 0 7 chr11 63039387 63039682 -87743871 - AluSx SINE Alu -14 298 6 1768 150 31 107 chr11 63039682 63039926 -87743627 + MLT1B LTR MaLR 190 390 0 2379 206 125 90 chr11 63039926 63040199 -87743354 + L1MC4 LINE L1 7388 7650 -392 3969 101 43 2 chr11 63040199 63040756 -87742797 + LTR19B LTR ERV1 1 580 0 2379 206 125 90 chr11 63040756 63041092 -87742461 + L1MC4 LINE L1 7650 8042 0 280 357 41 21 chr11 63041501 63041652 -87741901 - MIR SINE MIR -60 202 54 4142 129 16 44 chr11 63041652 63042051 -87741502 - L1PA13 LINE L1 0 6163 5789 2431 78 0 3 chr11 63042051 63042360 -87741193 - AluSc SINE Alu 0 309 2 4142 129 16 44 chr11 63042360 63042644 -87740909 - L1PA13 LINE L1 -374 5789 5499 280 357 41 21 chr11 63042644 63042688 -87740865 - MIR SINE MIR -208 54 12 1056 133 100 21 chr11 63042925 63043165 -87740388 - L1MC3 LINE L1 -13 7772 7514 288 286 156 71 chr11 63044165 63044259 -87739294 - MER5A DNA MER1_type -6 183 70 2030 111 9 32 chr11 63044259 63044574 -87738979 - AluSx SINE Alu -4 308 1 288 286 156 71 chr11 63044574 63044633 -87738920 - MER5A DNA MER1_type -119 70 17 271 272 107 29 chr11 63044675 63044778 -87738775 + MIR SINE MIR 45 155 -53 230 316 61 10 chr11 63044940 63045038 -87738515 + MIR SINE MIR 47 149 -113 513 253 84 7 chr11 63045154 63045308 -87738245 - MIR3 SINE MIR -25 183 18 252 304 38 0 chr11 63046456 63046535 -87737018 + MIR SINE MIR 15 96 -166 252 241 120 113 chr11 63046848 63046981 -87736572 - MER94 DNA DNA 0 134 1 279 324 135 0 chr11 63047607 63047755 -87735798 + MIR SINE MIR 23 190 -72 649 155 68 0 chr11 63048325 63048428 -87735125 + FLAM_C SINE Alu 9 118 -25 23 0 0 0 chr11 63048428 63048451 -87735102 + AT_rich Low_complexity Low_complexity 1 23 0 335 314 51 7 chr11 63048897 63049034 -87734519 - MIR SINE MIR -119 143 1 595 240 59 44 chr11 63052868 63053072 -87730481 + MIR SINE MIR 56 262 0 339 358 102 45 chr11 63054891 63055333 -87728220 + L1ME3 LINE L1 4 470 -5649 285 240 67 80 chr11 63055453 63055603 -87727950 + L1ME3 LINE L1 581 728 -5391 * 772 265 110 15 chr11 63055573 63056150 -87727403 + L1ME3 LINE L1 5156 5800 -353 337 284 72 114 chr11 63056617 63056923 -87726630 + L1ME3 LINE L1 5803 6095 -50 35829 60 5 5 chr11 63057559 63060961 -87722592 + L1PA5 LINE L1 578 3982 -2172 2584 74 0 0 chr11 63060961 63061272 -87722281 - AluY SINE Alu 0 311 1 35829 60 5 5 chr11 63061272 63063445 -87720108 + L1PA5 LINE L1 3982 6153 -1 29 28 0 0 chr11 63063526 63063562 -87719991 + AT_rich Low_complexity Low_complexity 1 36 0 432 228 201 0 chr11 63063562 63063711 -87719842 - MIR SINE MIR -77 185 7 301 326 135 0 chr11 63063763 63063904 -87719649 + MIR SINE MIR 23 182 -80 692 295 76 2 chr11 63064676 63064918 -87718635 - MIR SINE MIR -2 260 4 2317 97 0 10 chr11 63064990 63065288 -87718265 - AluSc SINE Alu -14 295 1 527 111 0 0 chr11 63065321 63065402 -87718151 + AluS SINE Alu 2 82 -231 2230 124 0 0 chr11 63065539 63065838 -87717715 - AluSg SINE Alu -11 299 1 230 284 74 0 chr11 63065898 63065993 -87717560 + MER103 DNA DNA 43 144 -22 342 262 75 43 chr11 63066065 63066252 -87717301 + L2 LINE L2 1715 1907 -1407 267 325 0 0 chr11 63068351 63068428 -87715125 - MIR SINE MIR -114 148 72 293 148 19 19 chr11 63068678 63068732 -87714821 + Tigger5 DNA MER2_type 1 54 -2269 * 395 233 0 0 chr11 63068702 63068775 -87714778 + Tigger5 DNA MER2_type 2251 2323 0 495 169 414 41 chr11 63068852 63069142 -87714411 + LTR48 LTR ERV1 1 398 -389 5883 129 89 29 chr11 63069238 63069438 -87714115 + Tigger3b DNA MER2_type 2 189 -2839 2266 91 0 46 chr11 63069438 63069745 -87713808 + AluSg SINE Alu 1 293 -17 5883 129 89 29 chr11 63069745 63069785 -87713768 + Tigger3b DNA MER2_type 189 225 -2803 13899 125 37 17 chr11 63069785 63069901 -87713652 - Tigger1 DNA MER2_type 0 2418 2306 1653 133 141 0 chr11 63069901 63070156 -87713397 + AluJb SINE Alu 1 291 -21 13899 125 37 17 chr11 63070156 63072410 -87711143 - Tigger1 DNA MER2_type -112 2306 2 5883 129 89 29 chr11 63072410 63072612 -87710941 + Tigger3b DNA MER2_type 225 414 -2614 2261 109 50 6 chr11 63072612 63072971 -87710582 + THE1C LTR MaLR 1 375 0 5883 129 89 29 chr11 63072971 63073684 -87709869 + Tigger3b DNA MER2_type 414 1228 -3 433 193 93 71 chr11 63073690 63073830 -87709723 + LTR48 LTR ERV1 613 755 -32 227 235 59 78 chr11 63073843 63073945 -87709608 - MIR SINE MIR -155 107 8 200 186 47 81 chr11 63074929 63075015 -87708538 + L2 LINE L2 3189 3271 -1 21 36 0 0 chr11 63075023 63075051 -87708502 + AT_rich Low_complexity Low_complexity 1 28 0 458 210 100 0 chr11 63075824 63075924 -87707629 + MER3 DNA MER1_type 100 209 0 509 266 21 10 chr11 63077864 63078069 -87705484 - MIR SINE MIR -21 241 34 567 335 5 5 chr11 63078345 63078530 -87705023 - MIR SINE MIR -65 197 13 228 244 26 51 chr11 63079422 63079500 -87704053 - MIR SINE MIR -13 249 174 * 457 274 43 0 chr11 63079478 63079595 -87703958 - L2 LINE L2 0 3313 3192 209 170 21 0 chr11 63080322 63080369 -87703184 - L2 LINE L2 -2 3311 3264 3400 167 64 11 chr11 63080610 63081249 -87702304 - MER21B LTR ERV1 -127 736 64 24 0 0 0 chr11 63081269 63081293 -87702260 + AT_rich Low_complexity Low_complexity 1 24 0 234 245 106 32 chr11 63081299 63081393 -87702160 - MIR SINE MIR -11 251 151 429 305 77 34 chr11 63081811 63082044 -87701509 + MIR SINE MIR 20 262 0 230 306 28 0 chr11 63082062 63082134 -87701419 + MIR SINE MIR 31 104 -104 * 378 319 94 6 chr11 63082128 63082288 -87701265 - MIR3 SINE MIR -1 207 34 235 288 0 15 chr11 63083035 63083101 -87700452 - MER5A DNA MER1_type -3 186 122 240 79 0 0 chr11 63083308 63083346 -87700207 - LTR54 LTR ERV1 0 510 473 916 129 0 82 chr11 63083346 63083516 -87700037 - FAM SINE Alu -13 172 17 927 147 83 34 chr11 63083522 63083749 -87699804 - LTR54 LTR ERV1 -64 446 232 393 22 0 0 chr11 63083749 63083795 -87699758 + (CA)n Simple_repeat Simple_repeat 2 47 0 927 147 83 34 chr11 63083795 63083931 -87699622 - LTR54 LTR ERV1 -278 232 5 561 225 101 45 chr11 63084211 63084389 -87699164 + MIR SINE MIR 2 189 -73 277 304 30 30 chr11 63084404 63084539 -87699014 + L2 LINE L2 2596 2730 -584 837 288 22 32 chr11 63084545 63084858 -87698695 - L2 LINE L2 -1 3312 3003 3504 142 64 44 chr11 63084858 63085590 -87697963 - LTR48 LTR ERV1 -1 786 40 3092 132 21 13 chr11 63085590 63085937 -87697616 + LTR45 LTR ERV1 1 355 -170 2200 96 59 31 chr11 63085937 63086291 -87697262 - THE1B LTR MaLR 0 364 1 3092 132 21 13 chr11 63086291 63086464 -87697089 + LTR45 LTR ERV1 355 525 0 317 133 0 0 chr11 63086464 63086509 -87697044 - MER39 LTR ERV1 -661 46 2 450 298 117 55 chr11 63086619 63087038 -87696515 + L2 LINE L2 2867 3311 -2 270 299 26 43 chr11 63087286 63087403 -87696150 - L2 LINE L2 0 3313 3199 1845 138 20 23 chr11 63087760 63088064 -87695489 - AluSx SINE Alu -9 303 1 22 0 0 0 chr11 63088664 63088686 -87694867 + AT_rich Low_complexity Low_complexity 1 22 0 1458 192 121 147 chr11 63088869 63089828 -87693725 - LTR1B LTR ERV1 0 1020 3 266 273 65 50 chr11 63091478 63091617 -87691936 - MIR SINE MIR -75 187 47 404 295 51 13 chr11 63091674 63091830 -87691723 - MER5B DNA MER1_type -16 162 1 201 121 0 0 chr11 63092278 63092311 -87691242 + L2 LINE L2 3194 3226 -87 475 244 143 0 chr11 63092342 63092504 -87691049 + MIR SINE MIR 16 197 -59 1908 132 17 27 chr11 63093895 63094190 -87689363 - AluJo SINE Alu -20 292 1 367 157 121 12 chr11 63094307 63094390 -87689163 + MIR SINE MIR 101 192 -70 1462 217 49 14 chr11 63094477 63094822 -87688731 - MSTD LTR MaLR 0 396 40 632 199 60 0 chr11 63095043 63095209 -87688344 + MER5B DNA MER1_type 1 176 -2 309 299 45 38 chr11 63095238 63095395 -87688158 + MIR SINE MIR 34 191 -71 1881 142 33 0 chr11 63097373 63097647 -87685906 + AluJb SINE Alu 1 283 -29 453 285 110 11 chr11 63097688 63097884 -87685669 - MIR SINE MIR -18 244 27 216 0 0 0 chr11 63100728 63100752 -87682801 + (CGG)n Simple_repeat Simple_repeat 2 25 0 25 31 0 0 chr11 63100975 63101007 -87682546 + GC_rich Low_complexity Low_complexity 1 32 0 600 313 33 14 chr11 63102505 63102719 -87680834 + MIR SINE MIR 45 262 0 316 185 222 0 chr11 63103220 63103301 -87680252 + MIR SINE MIR 51 149 -113 218 171 0 0 chr11 63103741 63103782 -87679771 - MIR SINE MIR -116 146 106 491 218 32 16 chr11 63104279 63104403 -87679150 + MIR SINE MIR 82 207 -55 230 302 145 34 chr11 63106270 63106449 -87677104 - L2 LINE L2 -222 3050 2852 191 245 0 0 chr11 63107053 63107102 -87676451 - L2 LINE L2 0 3272 3224 548 280 71 38 chr11 63107292 63107503 -87676050 + MIR SINE MIR 16 233 -29 608 239 22 0 chr11 63107705 63107843 -87675710 + MIR SINE MIR 13 153 -109 494 294 80 15 chr11 63108612 63108813 -87674740 + MIR SINE MIR 17 230 -32 24 0 0 0 chr11 63108859 63108883 -87674670 + AT_rich Low_complexity Low_complexity 1 24 0 1931 140 10 3 chr11 63109402 63109710 -87673843 - AluJb SINE Alu -2 310 1 281 167 0 17 chr11 63111786 63111846 -87671707 + L3 LINE CR1 1413 1471 -106 231 36 0 0 chr11 63112540 63112568 -87670985 + (GGA)n Simple_repeat Simple_repeat 1 28 0 212 305 214 15 chr11 63113858 63113989 -87669564 - MIR3 SINE MIR -15 193 37 239 317 110 42 chr11 63114547 63115021 -87668532 + L2 LINE L2 2459 3016 -256 204 322 0 46 chr11 63115486 63115573 -87667980 + L2 LINE L2 3188 3270 -2 353 222 12 25 chr11 63116204 63116285 -87667268 - MIR SINE MIR -152 110 31 466 250 169 12 chr11 63116418 63116578 -87666975 + MIR SINE MIR 12 196 -66 253 241 12 24 chr11 63116655 63116738 -87666815 - MIR SINE MIR -12 250 169 181 231 185 0 chr11 63116792 63116857 -87666696 - MIR SINE MIR -114 148 72 321 250 40 57 chr11 63117084 63117208 -87666345 + MIR3 SINE MIR 62 183 -25 339 279 121 14 chr11 63117541 63117681 -87665872 + MIR3 SINE MIR 3 157 -51 518 271 159 6 chr11 63117684 63117854 -87665699 + MER117 DNA MER1_type 2 197 0 327 25 0 0 chr11 63119166 63119206 -87664347 + (CA)n Simple_repeat Simple_repeat 1 40 0 391 240 114 97 chr11 63119248 63119423 -87664130 - MER5B DNA MER1_type 0 178 1 188 281 0 0 chr11 63119457 63119514 -87664039 + MIR SINE MIR 72 128 -134 365 185 141 22 chr11 63119528 63119620 -87663933 - MIR3 SINE MIR -16 192 90 2102 125 0 3 chr11 63120087 63120392 -87663161 + AluSx SINE Alu 1 304 -8 241 326 11 0 chr11 63120491 63120583 -87662970 + (CACCAT)n Simple_repeat Simple_repeat 5 97 0 974 253 76 66 chr11 63121203 63121717 -87661836 + MLT1G1 LTR MaLR 76 594 -1 1747 158 33 3 chr11 63122201 63122504 -87661049 - AluJb SINE Alu 0 312 1 257 173 19 19 chr11 63123157 63123209 -87660344 + L2 LINE L2 3221 3272 0 2379 58 7 0 chr11 63123396 63123690 -87659863 - AluY SINE Alu -15 296 1 293 229 29 14 chr11 63124068 63124138 -87659415 - MER5A DNA MER1_type -56 133 63 1990 113 13 10 chr11 63125265 63125574 -87657979 + AluSx SINE Alu 1 310 -2 192 152 0 0 chr11 63125575 63125608 -87657945 + GA-rich Low_complexity Low_complexity 1 33 0 1295 53 12 0 chr11 63125608 63125779 -87657774 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 249 254 0 0 chr11 63126241 63126300 -87657253 - L2 LINE L2 0 3313 3255 180 246 33 16 chr11 63126372 63126433 -87657120 - MIR SINE MIR -163 99 38 533 231 126 15 chr11 63126521 63126720 -87656833 + MIR SINE MIR 28 248 -14 1973 100 29 36 chr11 63126729 63127038 -87656515 + AluSx SINE Alu 2 308 -4 217 281 31 0 chr11 63127085 63127149 -87656404 - MIR SINE MIR -59 149 84 26 109 0 0 chr11 63127661 63127771 -87655782 + GC_rich Low_complexity Low_complexity 1 110 0 228 259 0 37 chr11 63127884 63127965 -87655588 + CT-rich Low_complexity Low_complexity 5 82 0 * 350 295 3 53 chr11 63127910 63128176 -87655377 + C-rich Low_complexity Low_complexity 1 252 0 192 253 114 25 chr11 63128700 63128779 -87654774 - MIR3 SINE MIR -14 194 109 972 272 139 24 chr11 63129051 63129503 -87654050 + L2 LINE L2 2810 3313 0 2030 128 0 16 chr11 63129637 63129943 -87653610 - AluSg SINE Alu 0 310 10 2246 109 0 3 chr11 63130390 63130701 -87652852 - AluSx SINE Alu -2 310 1 2156 107 0 22 chr11 63131052 63131370 -87652183 - AluSx SINE Alu -1 311 1 410 225 0 101 chr11 63131384 63131436 -87652117 + Charlie8 DNA MER1_type 72 128 -213 2239 87 3 0 chr11 63131436 63131734 -87651819 + AluSp SINE Alu 1 299 -14 410 225 0 101 chr11 63131734 63131819 -87651734 + Charlie8 DNA MER1_type 128 195 -146 465 331 159 8 chr11 63133477 63133693 -87649860 + L2 LINE L2 2817 2999 -273 2407 140 25 65 chr11 63133693 63133766 -87649787 - MSTB LTR MaLR 0 426 352 2214 123 0 0 chr11 63133766 63134075 -87649478 + AluSg SINE Alu 2 310 0 2407 140 25 65 chr11 63134075 63134445 -87649108 - MSTB LTR MaLR -74 352 1 465 331 159 8 chr11 63134445 63134600 -87648953 + L2 LINE L2 2999 3244 -28 570 275 87 14 chr11 63134617 63134824 -87648729 + MIR SINE MIR 30 251 -11 1064 177 120 79 chr11 63134832 63134958 -87648595 + AluJo SINE Alu 2 121 -191 2272 97 0 0 chr11 63134958 63135257 -87648296 + AluSx SINE Alu 6 304 -8 1064 177 120 79 chr11 63135257 63135396 -87648157 + AluJo SINE Alu 121 278 -34 267 93 0 0 chr11 63135396 63135439 -87648114 + (GA)n Simple_repeat Simple_repeat 1 43 0 438 275 84 22 chr11 63135468 63135646 -87647907 - L2 LINE L2 -8 3305 3117 1089 220 14 9 chr11 63135716 63135934 -87647619 - MER20 DNA MER1_type 0 219 1 1192 239 96 55 chr11 63135950 63136427 -87647126 + MLT1D LTR MaLR 9 505 0 1370 158 19 68 chr11 63136493 63136921 -87646632 - MER39B LTR ERV1 0 653 319 2106 132 24 32 chr11 63136981 63137359 -87646194 - MER39B LTR ERV1 -278 375 1 251 310 151 39 chr11 63137368 63137626 -87645927 + L3 LINE CR1 662 948 -629 192 319 56 14 chr11 63137784 63137856 -87645697 + L3 LINE CR1 1035 1109 -468 5004 166 56 98 chr11 63138014 63138202 -87645351 + Charlie1a DNA MER1_type 7 201 -2560 2006 146 7 0 chr11 63138202 63138511 -87645042 + AluSx SINE Alu 1 311 -1 5004 166 56 98 chr11 63138511 63139585 -87643968 + Charlie1a DNA MER1_type 201 1318 -1443 2039 124 0 0 chr11 63139585 63139883 -87643670 - AluSx SINE Alu -14 298 1 5004 166 56 98 chr11 63139883 63140031 -87643522 + Charlie1a DNA MER1_type 1318 1353 -1408 2240 99 30 58 chr11 63140031 63140096 -87643457 - L1MA3 LINE L1 0 6305 6240 2129 112 6 16 chr11 63140096 63140408 -87643145 - AluSx SINE Alu -3 309 1 2240 99 30 58 chr11 63140408 63140737 -87642816 - L1MA3 LINE L1 -65 6240 5922 5004 166 56 98 chr11 63140737 63140836 -87642717 + Charlie1a DNA MER1_type 1353 1455 0 1291 345 46 9 chr11 63140839 63141381 -87642172 + ERVL LTR ERVL 2837 3398 -2366 657 311 68 15 chr11 63141463 63141531 -87642022 + ERVL LTR ERVL 3520 3583 -2181 2039 118 0 29 chr11 63141531 63141844 -87641709 - AluSg1 SINE Alu -5 304 1 657 311 68 15 chr11 63141844 63142190 -87641363 + ERVL LTR ERVL 3583 3984 -1780 464 312 23 23 chr11 63142359 63142532 -87641021 + LTR16C LTR ERVL 305 477 -14 455 271 109 16 chr11 63142548 63142740 -87640813 + L2 LINE L2 3054 3263 -50 593 299 86 21 chr11 63143045 63143279 -87640274 + MIR SINE MIR 14 262 0 2133 127 0 6 chr11 63143988 63144302 -87639251 - AluSx SINE Alu 0 312 1 772 280 116 67 chr11 63144366 63144997 -87638556 - L1MEd LINE L1 -4438 1730 980 1672 164 8 0 chr11 63144997 63145265 -87638288 - AluSx SINE Alu -13 299 30 772 280 116 67 chr11 63145265 63145725 -87637828 - L1MEd LINE L1 -5188 980 544 1178 175 0 5 chr11 63146117 63146311 -87637242 - AluJb SINE Alu -33 279 87 435 220 99 28 chr11 63146316 63146457 -87637096 - L1MEd LINE L1 -5962 157 7 196 309 179 0 chr11 63147048 63147132 -87636421 - L2 LINE L2 -6 3266 3168 193 357 43 24 chr11 63147121 63147331 -87636222 + L2 LINE L2 2842 3055 -217 * 714 303 78 48 chr11 63149595 63150071 -87633482 + MER113 DNA MER1_type? 16 505 -16 276 94 0 4 chr11 63150557 63150771 -87632782 - AluSc SINE Alu -9 290 1 258 318 91 39 chr11 63150984 63151138 -87632415 + MIR3 SINE MIR 36 197 -11 21 71 0 0 chr11 63151273 63151315 -87632238 + AT_rich Low_complexity Low_complexity 1 42 0 1003 201 55 70 chr11 63151486 63151740 -87631813 + MER33 DNA MER1_type 1 250 -2335 1746 154 7 14 chr11 63151740 63152033 -87631520 + AluJo SINE Alu 1 291 -21 1003 201 55 70 chr11 63152033 63152107 -87631446 + MER33 DNA MER1_type 250 324 0 1749 131 15 11 chr11 63152243 63152517 -87631036 - L1PB4 LINE L1 -2 6154 5880 1078 149 34 0 chr11 63153848 63154023 -87629530 - FRAM SINE Alu -3 173 1 967 249 98 32 chr11 63154045 63154422 -87629131 + MER113 DNA MER1_type? 120 521 0 357 326 79 11 chr11 63154654 63154832 -87628721 + MIR3 SINE MIR 15 204 -4 304 173 0 0 chr11 63155250 63155302 -87628251 - MIR SINE MIR -62 146 95 2156 107 3 19 chr11 63155676 63155993 -87627560 - AluSx SINE Alu 0 312 1 208 239 22 0 chr11 63156009 63156055 -87627498 - L2 LINE L2 -17 3296 3250 257 258 16 0 chr11 63156245 63156307 -87627246 - MIR SINE MIR -112 150 88 411 227 48 0 chr11 63156326 63156440 -87627113 + L1MD2 LINE L1 6246 7985 -10 1510 144 74 7 chr11 63156470 63156741 -87626812 + AluJo SINE Alu 11 299 -13 1878 120 0 37 chr11 63156769 63157069 -87626484 + AluSx SINE Alu 1 289 -23 396 297 51 41 chr11 63157382 63157577 -87625976 - MIR SINE MIR -51 211 15 226 231 192 0 chr11 63158605 63158683 -87624870 - MIR SINE MIR -64 144 52 287 302 35 9 chr11 63158956 63159072 -87624481 - MIR3 SINE MIR 0 208 90 2074 104 23 10 chr11 63159344 63159653 -87623900 - AluSq SINE Alu 0 313 1 3418 210 48 27 chr11 63159656 63160565 -87622988 - L1MD3 LINE L1 0 8042 7127 607 286 172 19 chr11 63160773 63161186 -87622367 - L2 LINE L2 -19 3294 2819 705 159 0 0 chr11 63161322 63161429 -87622124 - U6 snRNA snRNA 0 107 1 2336 91 0 3 chr11 63161436 63161745 -87621808 - AluSq SINE Alu -5 308 1 755 194 22 0 chr11 63161939 63162073 -87621480 + AluJo SINE Alu 2 138 -174 452 222 94 0 chr11 63162076 63162193 -87621360 + MER113 DNA MER1_type? 320 447 -74 232 250 15 15 chr11 63162269 63162337 -87621216 - MIR3 SINE MIR -53 155 88 215 207 69 0 chr11 63162653 63162711 -87620842 + MIR SINE MIR 54 115 -147 1745 172 116 58 chr11 63163047 63163110 -87620443 - MLT1C LTR MaLR -4 463 405 1921 104 70 0 chr11 63163110 63163397 -87620156 + AluSx SINE Alu 3 309 -3 1745 172 116 58 chr11 63163397 63163763 -87619790 - MLT1C LTR MaLR -62 405 9 283 119 17 17 chr11 63163794 63163853 -87619700 + (TG)n Simple_repeat Simple_repeat 1 59 0 376 331 16 0 chr11 63164334 63164455 -87619098 + MIR SINE MIR 16 138 -124 228 313 12 0 chr11 63165296 63165376 -87618177 + L2 LINE L2 2908 2988 -284 545 279 110 45 chr11 63165379 63165619 -87617934 + MIR SINE MIR 6 255 -7 426 338 19 0 chr11 63166004 63166164 -87617389 + MIR SINE MIR 44 206 -56 204 40 0 0 chr11 63166281 63166306 -87617247 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 320 323 24 24 chr11 63166313 63166437 -87617116 - L1ME4a LINE L1 -30 6091 5968 2147 121 3 0 chr11 63166485 63166791 -87616762 - AluSx SINE Alu -5 307 1 653 51 0 0 chr11 63167071 63167149 -87616404 + AluSq/x SINE Alu 42 119 -193 194 81 27 0 chr11 63167149 63167186 -87616367 + (TA)n Simple_repeat Simple_repeat 1 38 0 270 323 83 10 chr11 63167228 63167420 -87616133 - L1ME4a LINE L1 -318 5866 5661 2315 89 3 6 chr11 63167527 63167840 -87615713 - AluSp SINE Alu -1 312 1 277 292 110 34 chr11 63167991 63168056 -87615497 - MIR SINE MIR -18 244 185 1441 169 6 90 chr11 63168056 63168236 -87615317 - AluJo SINE Alu -8 304 110 297 89 0 0 chr11 63168236 63168281 -87615272 + (TA)n Simple_repeat Simple_repeat 2 46 0 1619 161 14 7 chr11 63168285 63168565 -87614988 - AluJo SINE Alu -30 282 1 1441 169 6 90 chr11 63168565 63168711 -87614842 - AluJo SINE Alu -205 107 1 277 292 110 34 chr11 63168711 63168854 -87614699 - MIR SINE MIR -77 185 20 2245 109 0 0 chr11 63168932 63169244 -87614309 + AluSx SINE Alu 1 312 0 23 0 0 0 chr11 63169244 63169267 -87614286 + AT_rich Low_complexity Low_complexity 1 23 0 188 379 62 12 chr11 63169696 63169857 -87613696 + L3b LINE CR1 1188 1356 -227 * 331 311 131 18 chr11 63169855 63170077 -87613476 - MIR SINE MIR -1 261 15 2056 102 3 40 chr11 63170545 63170867 -87612686 + AluSx SINE Alu 1 310 -2 2051 154 0 0 chr11 63171528 63171840 -87611713 - AluSx SINE Alu 0 312 1 637 207 0 0 chr11 63172442 63172563 -87610990 + MIR SINE MIR 14 134 -128 376 288 38 8 chr11 63173259 63173391 -87610162 - MIR SINE MIR -81 181 46 1459 199 28 23 chr11 63173438 63173489 -87610064 - Charlie5 DNA MER1_type 0 2624 2575 1975 133 0 10 chr11 63173489 63173824 -87609729 + AluSx SINE Alu 1 312 0 1459 199 28 23 chr11 63173824 63174159 -87609394 - Charlie5 DNA MER1_type -49 2575 2236 574 184 17 0 chr11 63174180 63174310 -87609243 - Charlie5 DNA MER1_type -2433 179 1 896 245 22 62 chr11 63174482 63174755 -87608798 + MIR SINE MIR 1 262 0 368 293 115 11 chr11 63174768 63174942 -87608611 - MIR3 SINE MIR -1 207 16 1956 133 30 0 chr11 63175271 63175571 -87607982 + AluSx SINE Alu 1 309 -3 187 373 0 0 chr11 63175636 63175711 -87607842 - L2 LINE L2 -4 3309 3235 243 310 10 10 chr11 63175921 63176021 -87607532 - L1ME LINE L1 -206 5915 5816 1869 135 3 35 chr11 63176159 63176478 -87607075 + AluSq SINE Alu 1 309 -4 382 234 35 82 chr11 63177449 63177591 -87605962 - MER113 DNA MER1_type? -36 485 351 2267 89 0 10 chr11 63177591 63177894 -87605659 - AluSg1 SINE Alu -9 300 1 382 234 35 82 chr11 63177894 63177922 -87605631 - MER113 DNA MER1_type? -170 351 323 896 202 35 6 chr11 63178145 63178318 -87605235 - MER45A DNA AcHobo 0 178 1 583 279 41 41 chr11 63178430 63178664 -87604889 - L1MC4a LINE L1 -1865 5943 5707 1995 118 0 14 chr11 63178664 63178961 -87604592 + AluSx SINE Alu 1 293 -19 583 279 41 41 chr11 63178961 63178995 -87604558 - L1MC4a LINE L1 -2100 5708 5675 1903 188 15 42 chr11 63179039 63179348 -87604205 - MSTD LTR MaLR -2 394 96 2096 106 0 0 chr11 63179348 63179673 -87603880 - AluSx SINE Alu 0 325 1 1903 188 15 42 chr11 63179673 63179767 -87603786 - MSTD LTR MaLR -300 96 1 274 210 0 0 chr11 63179770 63179832 -87603721 - MER113 DNA MER1_type? -380 141 80 2039 109 3 7 chr11 63179859 63180153 -87603400 + AluJb SINE Alu 1 293 -19 287 247 11 11 chr11 63180582 63180675 -87602878 + (CA)n Simple_repeat Simple_repeat 1 93 0 400 273 2 11 chr11 63181093 63181205 -87602348 - MLT1I LTR MaLR 0 428 318 189 267 0 0 chr11 63181490 63181535 -87602018 + MIR SINE MIR 52 96 -166 481 316 51 5 chr11 63181705 63181920 -87601633 - LTR33 LTR ERVL -233 288 64 257 273 25 83 chr11 63181965 63182062 -87601491 + MIR SINE MIR 93 183 -79 2459 74 3 0 chr11 63182062 63182373 -87601180 + AluSp SINE Alu 1 312 -1 257 273 25 83 chr11 63182373 63182396 -87601157 + MIR SINE MIR 183 206 -56 255 319 14 0 chr11 63183347 63183419 -87600134 - L2 LINE L2 -1 3271 3199 323 319 70 22 chr11 63183782 63183967 -87599586 - MIR3 SINE MIR -7 201 8 246 260 128 98 chr11 63185291 63185556 -87597997 - L2 LINE L2 -13 3259 2987 578 175 0 0 chr11 63185703 63185800 -87597753 - MER5A DNA MER1_type -80 109 13 254 319 17 26 chr11 63186623 63186734 -87596819 - MIR SINE MIR 0 262 152 531 223 27 49 chr11 63186734 63186918 -87596635 - MER104 DNA MER2_type 0 180 1 226 303 26 0 chr11 63186939 63187015 -87596538 + MIR SINE MIR 40 117 -145 264 311 39 29 chr11 63187361 63187464 -87596089 + L2 LINE L2 3207 3310 -3 360 0 0 0 chr11 63187591 63187631 -87595922 + (TG)n Simple_repeat Simple_repeat 2 41 0 279 287 133 43 chr11 63187966 63188154 -87595399 - MIR SINE MIR -35 227 23 771 245 15 25 chr11 63188196 63188400 -87595153 + MIR SINE MIR 40 241 -21 302 301 122 8 chr11 63189439 63189562 -87593991 + L2 LINE L2 3172 3308 -5 228 224 0 0 chr11 63189653 63189702 -87593851 - L2 LINE L2 -2 3311 3263 216 143 0 0 chr11 63190173 63190215 -87593338 + (TG)n Simple_repeat Simple_repeat 1 42 0 2355 86 0 0 chr11 63190879 63191181 -87592372 + AluSx SINE Alu 1 302 -10 186 311 0 0 chr11 63191383 63191428 -87592125 + L2 LINE L2 3209 3253 -19 717 220 24 6 chr11 63191460 63191628 -87591925 + MIR SINE MIR 87 257 -5 2008 142 0 0 chr11 63191715 63192017 -87591536 + AluJb SINE Alu 1 302 -10 192 203 186 0 chr11 63192809 63192868 -87590685 - MER5A DNA MER1_type -7 182 113 426 247 67 13 chr11 63192879 63193193 -87590360 - MLT1J LTR MaLR -2 509 66 261 337 0 0 chr11 63194058 63194147 -87589406 - L3b LINE CR1 -153 1430 1342 352 292 53 27 chr11 63194497 63194661 -87588892 + MIR3 SINE MIR 21 189 -19 1229 173 59 35 chr11 63194973 63195262 -87588291 + AluJo SINE Alu 1 296 -16 391 224 0 80 chr11 63195316 63195441 -87588112 + L3 LINE CR1 1402 1516 -61 310 266 137 8 chr11 63195974 63196098 -87587455 + L3 LINE CR1 1415 1554 -23 305 140 18 0 chr11 63196853 63196910 -87586643 + (TG)n Simple_repeat Simple_repeat 1 58 0 963 260 122 18 chr11 63196928 63197263 -87586290 - LTR16C LTR ERVL -33 458 89 279 79 0 0 chr11 63197337 63197375 -87586178 + (TG)n Simple_repeat Simple_repeat 2 39 0 1787 130 10 31 chr11 63197486 63197779 -87585774 + AluJo SINE Alu 1 287 -25 390 242 62 62 chr11 63198433 63198594 -87584959 + MIR SINE MIR 46 206 -56 434 227 59 0 chr11 63198722 63198849 -87584704 - MIR3 SINE MIR -23 185 51 213 282 91 18 chr11 63199109 63199219 -87584334 - L2 LINE L2 -21 3251 3134 292 303 80 11 chr11 63199428 63199603 -87583950 - L2 LINE L2 -220 3052 2866 532 234 41 4 chr11 63199605 63199755 -87583798 - MIR SINE MIR -40 168 15 460 289 147 6 chr11 63200067 63200223 -87583330 - MIR SINE MIR -21 241 64 647 184 0 7 chr11 63200635 63200782 -87582771 + CT-rich Low_complexity Low_complexity 3 148 0 2180 125 0 0 chr11 63200784 63201096 -87582457 - AluSx SINE Alu 0 312 1 197 316 93 29 chr11 63201473 63201612 -87581941 - L2 LINE L2 -189 3083 2936 505 288 68 0 chr11 63202030 63202193 -87581360 - MIR SINE MIR -29 233 60 220 325 0 12 chr11 63202895 63202978 -87580575 + GA-rich Low_complexity Low_complexity 2 83 0 359 361 22 6 chr11 63203051 63203234 -87580319 - MIR SINE MIR -40 222 37 213 254 0 42 chr11 63203249 63203320 -87580233 + GA-rich Low_complexity Low_complexity 2 69 0 1133 169 0 0 chr11 63204515 63204699 -87578854 - AluJ SINE Alu 0 312 129 249 214 22 11 chr11 63204699 63204788 -87578765 + CT-rich Low_complexity Low_complexity 1 90 0 699 179 73 0 chr11 63204795 63204918 -87578635 - AluJ SINE Alu -170 132 1 372 190 35 35 chr11 63205205 63205321 -87578232 + MER113 DNA MER1_type? 33 148 -373 1008 222 93 29 chr11 63205321 63205632 -87577921 + L1MC4 LINE L1 7527 7857 -185 2285 89 0 3 chr11 63205633 63205937 -87577616 + AluSq SINE Alu 1 303 -10 321 26 0 0 chr11 63206047 63206085 -87577468 + (TG)n Simple_repeat Simple_repeat 2 39 0 460 185 43 0 chr11 63206148 63206240 -87577313 + L1MC4 LINE L1 7942 8037 -5 831 310 81 0 chr11 63206253 63206550 -87577003 + MER113 DNA MER1_type? 136 456 -65 3877 162 51 111 chr11 63207017 63207211 -87576342 - L1MC3 LINE L1 -8 7777 7573 231 36 0 0 chr11 63207211 63207239 -87576314 + (GTTTG)n Simple_repeat Simple_repeat 3 30 0 3877 162 51 111 chr11 63207239 63207251 -87576302 - L1MC3 LINE L1 -212 7573 7562 2192 89 0 0 chr11 63207251 63207567 -87575986 - AluSq SINE Alu 0 316 1 189 0 0 0 chr11 63207577 63207598 -87575955 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 1688 150 11 4 chr11 63207600 63207880 -87575673 - AluJo SINE Alu -30 282 1 3877 162 51 111 chr11 63207880 63208463 -87575090 - L1MC3 LINE L1 -233 7552 7045 1983 103 0 0 chr11 63208463 63208735 -87574818 - AluSx SINE Alu -40 272 1 3877 162 51 111 chr11 63208735 63208954 -87574599 - L1MC3 LINE L1 -740 7045 6814 1902 156 6 9 chr11 63208951 63209284 -87574269 + L1MB3 LINE L1 5809 6142 -41 * 1890 173 3 7 chr11 63209284 63209585 -87573968 + AluJo SINE Alu 1 300 -12 729 174 34 0 chr11 63209587 63209736 -87573817 - L1MC3 LINE L1 -1220 6565 6412 * 233 319 44 81 chr11 63209736 63209896 -87573657 + L2 LINE L2 3152 3305 -8 192 338 29 0 chr11 63209882 63209950 -87573603 - L2 LINE L2 -16 3256 3187 * 481 276 0 9 chr11 63210066 63210182 -87573371 + L2 LINE L2 3190 3304 -9 279 277 50 0 chr11 63210389 63210490 -87573063 + Tigger8 DNA MER2_type 253 358 -308 1759 181 0 13 chr11 63210813 63211117 -87572436 + AluJb SINE Alu 1 300 -12 260 300 38 0 chr11 63211666 63211746 -87571807 - MIR SINE MIR -40 222 140 285 283 44 18 chr11 63212434 63212547 -87571006 - MIR SINE MIR -61 147 32 717 272 4 42 chr11 63212549 63212788 -87570765 + Charlie8 DNA MER1_type 4 233 -2184 1885 82 74 4 chr11 63213121 63213378 -87570175 - AluSp SINE Alu -38 275 1 1477 240 18 6 chr11 63213958 63214295 -87569258 - MER58B DNA MER1_type 0 341 1 1338 227 121 87 chr11 63214332 63214617 -87568936 - Charlie2 DNA MER1_type -62 2800 2526 2519 81 3 0 chr11 63214617 63214927 -87568626 - AluSp SINE Alu -2 311 1 1338 227 121 87 chr11 63214927 63214988 -87568565 - Charlie2 DNA MER1_type -336 2526 2469 2277 75 7 10 chr11 63214988 63215280 -87568273 - AluSx SINE Alu -18 294 4 1338 227 121 87 chr11 63215280 63215756 -87567797 - Charlie2 DNA MER1_type -393 2469 1942 2393 109 0 0 chr11 63215756 63216068 -87567485 + AluSx SINE Alu 1 312 0 1338 227 121 87 chr11 63216068 63216130 -87567423 - Charlie2 DNA MER1_type -920 1942 1884 259 250 200 17 chr11 63216140 63216260 -87567293 - Charlie2 DNA MER1_type -2457 325 184 2151 187 91 88 chr11 63216420 63216944 -87566609 + MER67B LTR ERV1 1 529 -132 1722 143 40 37 chr11 63216944 63217244 -87566309 + AluJo SINE Alu 4 304 -8 2151 187 91 88 chr11 63217244 63217376 -87566177 + MER67B LTR ERV1 529 659 -2 2257 125 0 0 chr11 63217725 63218028 -87565525 + AluSx SINE Alu 1 303 -9 375 337 71 15 chr11 63218885 63219081 -87564472 + L1MC4a LINE L1 5720 5926 -1882 246 32 0 0 chr11 63219097 63219128 -87564425 + (CA)n Simple_repeat Simple_repeat 1 31 0 250 195 47 0 chr11 63219178 63219248 -87564305 + MER45 DNA AcHobo 58 1538 -43 1524 244 74 40 chr11 63219277 63219875 -87563678 - L1ME1 LINE L1 -5 6161 5544 21 36 0 0 chr11 63220363 63220391 -87563162 + AT_rich Low_complexity Low_complexity 1 28 0 36 23 0 0 chr11 63220448 63220491 -87563062 + AT_rich Low_complexity Low_complexity 1 43 0 337 315 142 12 chr11 63220713 63220827 -87562726 - L1ME4a LINE L1 -277 5844 5746 186 43 0 0 chr11 63220827 63220850 -87562703 + (TG)n Simple_repeat Simple_repeat 2 24 0 337 315 142 12 chr11 63220850 63221250 -87562303 - L1ME4a LINE L1 -375 5746 5263 215 294 59 0 chr11 63221251 63221319 -87562234 + L2 LINE L2 3242 3313 0 334 290 130 15 chr11 63221941 63222141 -87561412 + L1ME4a LINE L1 5513 5735 -386 355 214 61 41 chr11 63222286 63222384 -87561169 + L1ME4a LINE L1 6011 6110 -11 2448 57 0 14 chr11 63222436 63222733 -87560820 + AluY SINE Alu 1 293 -18 231 213 0 0 chr11 63222819 63222866 -87560687 - L1ME4a LINE L1 -72 6049 6003 203 274 0 0 chr11 63222869 63222920 -87560633 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 370 221 15 113 chr11 63222922 63223117 -87560436 - L1MC4a LINE L1 -1914 5894 5719 248 291 101 0 chr11 63223206 63223285 -87560268 + MIR3 SINE MIR 113 199 -9 256 128 0 0 chr11 63223841 63223880 -87559673 - L2 LINE L2 -11 3261 3223 215 273 78 13 chr11 63225471 63225548 -87558005 + MIR SINE MIR 87 168 -94 264 226 333 0 chr11 63225563 63225656 -87557897 + MIR SINE MIR 100 223 -39 244 205 0 0 chr11 63225714 63225753 -87557800 + L2 LINE L2 3255 3293 -20 26 0 0 0 chr11 63225974 63226000 -87557553 + AT_rich Low_complexity Low_complexity 1 26 0 1814 167 0 7 chr11 63226003 63226291 -87557262 - AluJb SINE Alu -26 286 1 477 200 131 151 chr11 63226809 63226917 -87556636 + MER34C LTR ERV1 3 112 -430 1806 144 7 31 chr11 63226917 63227209 -87556344 + AluJo SINE Alu 12 296 -16 477 200 131 151 chr11 63227209 63227636 -87555917 + MER34C LTR ERV1 112 527 -15 531 281 86 19 chr11 63227834 63228044 -87555509 + MIR SINE MIR 20 243 -19 36 91 0 0 chr11 63228096 63228195 -87555358 + AT_rich Low_complexity Low_complexity 1 99 0 304 185 0 0 chr11 63228195 63228249 -87555304 + AluJ/FLAM SINE Alu 44 97 -205 180 125 0 0 chr11 63228249 63228281 -87555272 + (A)n Simple_repeat Simple_repeat 1 32 0 212 328 69 15 chr11 63228876 63229007 -87554546 - MIR3 SINE MIR -53 155 18 2008 155 0 16 chr11 63229862 63230179 -87553374 + AluJb SINE Alu 1 312 0 972 224 56 87 chr11 63230422 63230768 -87552785 + L1MB7 LINE L1 5726 6060 -124 2185 114 7 0 chr11 63230768 63231067 -87552486 + AluSx SINE Alu 1 301 -11 972 224 56 87 chr11 63231067 63231112 -87552441 + L1MB7 LINE L1 6060 6105 -79 590 214 0 0 chr11 63231151 63231249 -87552304 + FLAM_A SINE Alu 19 116 -26 227 186 34 0 chr11 63231249 63231308 -87552245 + L1MB7 LINE L1 6124 6184 0 747 261 18 27 chr11 63231437 63231659 -87551894 + MIR SINE MIR 43 262 0 399 273 28 49 chr11 63232366 63232489 -87551064 + MER5A DNA MER1_type 50 171 -18 875 86 0 57 chr11 63232489 63232629 -87550924 + FLAM_C SINE Alu 2 133 0 399 273 28 49 chr11 63232629 63232648 -87550905 + MER5A DNA MER1_type 171 189 0 201 296 86 0 chr11 63232846 63232927 -87550626 - MIR SINE MIR -72 190 103 354 215 83 41 chr11 63233330 63233451 -87550102 - MER5B DNA MER1_type -35 143 18 628 261 80 7 chr11 63233982 63234168 -87549385 - MIR SINE MIR -61 147 4 461 215 54 39 chr11 63234318 63234448 -87549105 + MER94 DNA DNA 1 132 -2 221 318 0 0 chr11 63234460 63234526 -87549027 + MIR SINE MIR 97 162 -100 2687 38 0 16 chr11 63234660 63234974 -87548579 - AluY SINE Alu -2 309 1 921 120 0 8 chr11 63235483 63235616 -87547937 + FLAM_C SINE Alu 2 133 0 187 238 12 75 chr11 63235745 63235825 -87547728 + MIR SINE MIR 107 181 -81 288 380 21 7 chr11 63236020 63236162 -87547391 + MIR SINE MIR 20 163 -99 414 0 0 0 chr11 63236329 63236375 -87547178 + (TA)n Simple_repeat Simple_repeat 2 47 0 476 197 43 43 chr11 63236607 63236706 -87546847 - MER69A DNA AcHobo -2349 177 76 2184 115 0 0 chr11 63236706 63236992 -87546561 + AluSx SINE Alu 21 306 -6 476 197 43 43 chr11 63236992 63237009 -87546544 - MER69A DNA AcHobo -2449 77 61 238 232 188 36 chr11 63237104 63237216 -87546337 - MIR SINE MIR -120 142 14 193 119 48 0 chr11 63238004 63238046 -87545507 + C-rich Low_complexity Low_complexity 3 46 0 247 333 129 0 chr11 63238309 63238441 -87545112 - L2 LINE L2 -3 3269 3121 486 237 176 0 chr11 63238598 63238729 -87544824 - MIR SINE MIR -30 232 79 543 279 81 15 chr11 63238866 63239085 -87544468 + Charlie8 DNA MER1_type 2 244 -2173 2319 76 10 0 chr11 63240011 63240299 -87543254 + AluSx SINE Alu 9 299 -13 185 273 91 13 chr11 63240385 63240462 -87543091 + MIR SINE MIR 62 144 -118 2303 113 0 0 chr11 63240551 63240844 -87542709 - AluSx SINE Alu -19 293 1 1979 155 0 32 chr11 63241270 63241586 -87541967 + AluJo SINE Alu 1 306 -6 1088 113 142 57 chr11 63241754 63241832 -87541721 + MER30 DNA MER1_type 1 71 -159 2076 114 13 10 chr11 63241832 63242150 -87541403 + AluSq SINE Alu 1 313 0 1088 113 142 57 chr11 63242150 63242283 -87541270 + MER30 DNA MER1_type 71 230 0 184 241 19 0 chr11 63242876 63242930 -87540623 - MIR SINE MIR -76 132 78 252 0 0 0 chr11 63243331 63243359 -87540194 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 826 232 62 43 chr11 63243448 63243751 -87539802 + L1ME3 LINE L1 5768 6079 -83 207 114 0 0 chr11 63243751 63243786 -87539767 + (TG)n Simple_repeat Simple_repeat 1 35 0 826 232 62 43 chr11 63243786 63243805 -87539748 + L1ME3 LINE L1 6079 6096 -66 486 134 0 0 chr11 63244113 63244180 -87539373 + AluJ/FLAM SINE Alu 2 68 -244 1216 243 141 10 chr11 63244834 63245225 -87538328 + L2 LINE L2 2264 2705 -609 1099 253 158 30 chr11 63245229 63245667 -87537886 + L2 LINE L2 2820 3313 0 2408 78 3 3 chr11 63246664 63246958 -87536595 + AluY SINE Alu 1 294 -17 3159 116 4 14 chr11 63247061 63247553 -87536000 - LTR15 LTR ERV1 -6 487 1 257 281 83 16 chr11 63248266 63248387 -87535166 + L2 LINE L2 3185 3313 0 445 258 89 0 chr11 63249534 63249658 -87533895 + MIR3 SINE MIR 68 202 -6 2269 132 0 0 chr11 63249728 63250038 -87533515 + AluSx SINE Alu 1 310 -2 291 271 52 21 chr11 63250471 63250567 -87532986 - MIR3 SINE MIR -23 185 87 464 306 105 39 chr11 63250569 63250951 -87532602 + L1MC4a LINE L1 4522 4928 -1218 437 300 66 37 chr11 63251024 63251698 -87531855 + L1MC4a LINE L1 4964 5653 -468 756 88 0 10 chr11 63251801 63251903 -87531650 + FLAM_A SINE Alu 24 124 -18 354 326 6 55 chr11 63251904 63252085 -87531468 + L1MC4a LINE L1 5775 5946 -1862 234 0 0 0 chr11 63252321 63252347 -87531206 + (TG)n Simple_repeat Simple_repeat 1 26 0 220 305 130 23 chr11 63252377 63252508 -87531045 - MIR SINE MIR -78 184 40 256 278 120 0 chr11 63252681 63252789 -87530764 - L1ME4a LINE L1 -33 6088 5968 537 324 87 10 chr11 63253082 63253394 -87530159 + L1ME4a LINE L1 4963 5298 -848 257 202 119 9 chr11 63253439 63253548 -87530005 + MER3 DNA MER1_type 49 122 -87 440 139 78 43 chr11 63253560 63253675 -87529878 - MER3 DNA MER1_type -49 160 42 318 223 32 21 chr11 63253655 63253749 -87529804 - MER3 DNA MER1_type -114 95 1 * 258 267 22 0 chr11 63253753 63253843 -87529710 + L1ME4a LINE L1 5341 5432 -732 433 340 51 22 chr11 63253880 63254195 -87529358 + L1ME4a LINE L1 5531 5854 -267 382 289 164 40 chr11 63254430 63254631 -87528922 + MIR SINE MIR 6 231 -31 372 251 122 91 chr11 63254663 63254760 -87528793 + L1ME4a LINE L1 5840 5933 -188 2337 98 0 3 chr11 63254760 63255057 -87528496 - AluSc SINE Alu -11 298 3 372 251 122 91 chr11 63255057 63255222 -87528331 + L1ME4a LINE L1 5933 6110 -11 302 229 25 76 chr11 63255354 63255387 -87528166 + L1ME4a LINE L1 6009 6042 -79 2270 109 0 17 chr11 63255387 63255689 -87527864 - AluSx SINE Alu -15 297 1 302 229 25 76 chr11 63255689 63255773 -87527780 + L1ME4a LINE L1 6042 6120 -1 220 337 53 21 chr11 63256863 63256958 -87526595 + MIR SINE MIR 46 143 -65 2253 86 20 0 chr11 63257294 63257586 -87525967 - AluY SINE Alu 0 311 14 388 293 20 0 chr11 63259147 63259246 -87524307 - MIR SINE MIR -34 228 128 321 224 79 0 chr11 63259604 63259680 -87523873 + MIR SINE MIR 35 116 -92 604 225 68 9 chr11 63260450 63260660 -87522893 + L1ME3A LINE L1 5725 5942 -228 975 146 0 0 chr11 63260660 63260797 -87522756 + AluSx SINE Alu 1 137 -176 10036 12 0 0 chr11 63260797 63262793 -87520760 + L1HS LINE L1 4160 6155 0 31 58 0 0 chr11 63262793 63262845 -87520708 + AT_rich Low_complexity Low_complexity 1 52 0 1074 133 39 6 chr11 63262845 63263026 -87520527 + AluSx SINE Alu 118 304 -6 362 263 253 11 chr11 63263026 63263216 -87520337 + L1ME3A LINE L1 5930 6165 -5 305 319 53 0 chr11 63263238 63263351 -87520202 + MIR SINE MIR 48 166 -96 1855 121 0 15 chr11 63263625 63263897 -87519656 - AluJb SINE Alu -44 268 1 557 209 7 0 chr11 63263988 63264141 -87519412 + (CAT)n Simple_repeat Simple_repeat 2 155 0 206 319 50 15 chr11 63264352 63264504 -87519049 + MIR SINE MIR 23 182 -26 293 241 143 34 chr11 63264940 63265010 -87518543 + L1ME4a LINE L1 5666 5727 -394 1875 142 19 19 chr11 63265010 63265321 -87518232 + AluJo SINE Alu 1 311 -1 293 241 143 34 chr11 63265321 63265516 -87518037 + L1ME4a LINE L1 5727 5960 -161 306 211 114 41 chr11 63265537 63265660 -87517893 - L1MCa LINE L1 -4363 2063 1932 22 0 0 0 chr11 63265755 63265777 -87517776 + AT_rich Low_complexity Low_complexity 1 22 0 360 370 20 30 chr11 63265956 63266156 -87517397 - L1ME4a LINE L1 -173 5948 5751 296 291 83 9 chr11 63266374 63266533 -87517020 - MIR3 SINE MIR -32 176 7 570 270 75 35 chr11 63266557 63266783 -87516770 + L2 LINE L2 2941 3175 -97 214 248 89 40 chr11 63267042 63267143 -87516410 - MIR SINE MIR -80 182 77 293 326 14 21 chr11 63267226 63267367 -87516186 + MIR3 SINE MIR 2 141 -67 241 276 197 8 chr11 63268058 63268185 -87515368 - MIR3 SINE MIR -11 197 47 203 156 89 0 chr11 63268515 63268560 -87514993 - L2 LINE L2 -1 3271 3223 202 217 0 22 chr11 63268569 63268615 -87514938 + CT-rich Low_complexity Low_complexity 2 46 0 337 267 69 0 chr11 63269323 63269424 -87514129 + MIR SINE MIR 89 196 -66 255 61 0 0 chr11 63269664 63269697 -87513856 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 2078 161 81 32 chr11 63270041 63270476 -87513077 + LTR2B LTR ERV1 35 490 0 2860 92 2 15 chr11 63270476 63270880 -87512673 + Harlequin LTR ERV1 1 399 -6497 * 14649 190 12 16 chr11 63270851 63273466 -87510087 + Harlequin LTR ERV1 255 2859 -4954 10552 59 1 2 chr11 63273462 63274817 -87508736 + Harlequin LTR ERV1 5544 6896 0 * 1857 193 46 18 chr11 63274817 63275267 -87508286 + LTR2B LTR ERV1 1 490 0 277 278 6 39 chr11 63275785 63275965 -87507588 + (CA)n Simple_repeat Simple_repeat 1 174 0 302 257 6 44 chr11 63276476 63276659 -87506894 + (CA)n Simple_repeat Simple_repeat 1 176 0 276 256 12 41 chr11 63276772 63276944 -87506609 + (CA)n Simple_repeat Simple_repeat 2 168 0 232 297 0 38 chr11 63277032 63277217 -87506336 + (CA)n Simple_repeat Simple_repeat 1 178 0 266 290 0 38 chr11 63277256 63277442 -87506111 + (CA)n Simple_repeat Simple_repeat 2 180 0 201 273 12 41 chr11 63277528 63277700 -87505853 + (CA)n Simple_repeat Simple_repeat 1 167 0 342 0 0 0 chr11 63277876 63277914 -87505639 + (CA)n Simple_repeat Simple_repeat 2 39 0 212 305 53 11 chr11 63278915 63279010 -87504543 - L3 LINE CR1 -66 1511 1413 330 274 147 0 chr11 63279195 63279290 -87504263 + MIR SINE MIR 45 153 -55 284 172 0 32 chr11 63279503 63279596 -87503957 + (TG)n Simple_repeat Simple_repeat 1 90 0 191 229 0 9 chr11 63279626 63279735 -87503818 + (TG)n Simple_repeat Simple_repeat 1 108 0 465 250 6 12 chr11 63279754 63279926 -87503627 + (TG)n Simple_repeat Simple_repeat 2 172 0 288 211 6 22 chr11 63279941 63280121 -87503432 + (TG)n Simple_repeat Simple_repeat 1 177 0 343 340 25 20 chr11 63280665 63280862 -87502691 - MIR SINE MIR -50 212 15 655 221 105 31 chr11 63281262 63281484 -87502069 + MIR SINE MIR 19 248 -14 699 251 40 96 chr11 63281641 63281803 -87501750 - L2 LINE L2 0 3313 3143 2395 79 0 0 chr11 63281803 63282106 -87501447 + AluSx SINE Alu 1 303 -9 699 251 40 96 chr11 63282106 63282369 -87501184 - L2 LINE L2 -170 3143 2912 775 284 50 48 chr11 63282852 63283355 -87500198 - L2 LINE L2 -1 3312 2709 784 235 203 0 chr11 63283358 63283639 -87499914 - MER46C DNA MER2_type 0 338 1 638 248 19 6 chr11 63283969 63284130 -87499423 + MIR SINE MIR 50 212 -50 572 224 20 14 chr11 63285145 63285292 -87498261 + MER46C DNA MER2_type 48 195 -143 467 279 37 0 chr11 63286314 63286450 -87497103 - MIR3 SINE MIR -2 206 66 671 241 78 21 chr11 63286607 63286798 -87496755 + MIR SINE MIR 20 221 -41 498 114 0 0 chr11 63286810 63286889 -87496664 + (ATGGTG)n Simple_repeat Simple_repeat 3 81 0 221 268 124 10 chr11 63287224 63287321 -87496232 + MIR SINE MIR 7 114 -94 534 169 0 0 chr11 63287487 63287576 -87495977 - Tigger5 DNA MER2_type -1 2322 2234 286 185 19 0 chr11 63287583 63287637 -87495916 - Tigger5 DNA MER2_type -2268 55 1 491 281 16 68 chr11 63287817 63288009 -87495544 - MIR SINE MIR -38 224 43 2175 117 0 0 chr11 63288323 63288623 -87494930 + AluSx SINE Alu 1 300 -12 774 148 8 0 chr11 63288912 63289034 -87494519 - FLAM_A SINE Alu -10 123 1 2047 144 0 3 chr11 63289620 63289932 -87493621 - AluSx SINE Alu -1 311 1 745 208 14 7 chr11 63290094 63290238 -87493315 - FRAM SINE Alu -31 145 1 1609 179 24 7 chr11 63290280 63290395 -87493158 + AluJb SINE Alu 3 115 -197 366 80 0 0 chr11 63290395 63290445 -87493108 + (CATA)n Simple_repeat Simple_repeat 3 52 0 1609 179 24 7 chr11 63290445 63290625 -87492928 + AluJb SINE Alu 115 303 -9 385 269 27 40 chr11 63290639 63290788 -87492765 + L1ME1 LINE L1 6005 6151 -15 235 243 29 14 chr11 63290812 63290882 -87492671 + MER112 DNA MER1_type 178 248 -12 414 292 17 0 chr11 63291557 63291677 -87491876 - MER103 DNA DNA -44 122 1 229 256 103 34 chr11 63291775 63291892 -87491661 + MIR SINE MIR 25 149 -113 241 318 80 30 chr11 63292146 63292347 -87491206 - L1MC4a LINE L1 -1643 6165 5955 652 45 82 12 chr11 63292363 63292607 -87490946 + (CA)n Simple_repeat Simple_repeat 1 260 0 2508 179 53 18 chr11 63292645 63293191 -87490362 + L1ME1 LINE L1 5598 6162 -4 2248 79 0 33 chr11 63293191 63293495 -87490058 - AluSx SINE Alu -18 294 1 351 206 59 29 chr11 63294703 63294805 -87488748 + MER53 DNA DNA 6 110 -79 211 294 20 20 chr11 63295848 63295950 -87487603 + L3 LINE CR1 1277 1378 -199 421 293 139 14 chr11 63296032 63296240 -87487313 - MIR SINE MIR -13 249 16 337 224 176 34 chr11 63296250 63296381 -87487172 + MER5A DNA MER1_type 14 178 0 406 289 40 7 chr11 63296419 63296571 -87486982 - MER91A DNA MER1_type -27 169 13 1166 116 4 0 chr11 63297961 63298229 -87485324 + (TGGA)n Simple_repeat Simple_repeat 1 269 0 294 341 8 24 chr11 63299018 63299141 -87484412 + MIR SINE MIR 25 145 -63 268 250 10 31 chr11 63299440 63299536 -87484017 + C-rich Low_complexity Low_complexity 5 98 0 288 335 45 0 chr11 63299986 63300141 -87483412 + MER103 DNA DNA 4 165 -1 1467 179 8 22 chr11 63303976 63304244 -87479309 + AluJo SINE Alu 3 266 -46 1192 92 0 23 chr11 63304277 63304451 -87479102 + AluSg/x SINE Alu 125 294 -18 392 276 37 37 chr11 63308398 63308532 -87475021 + L2 LINE L2 3178 3311 -2 725 268 62 10 chr11 63309482 63309676 -87473877 + MIR SINE MIR 35 238 -24 1316 203 62 4 chr11 63311145 63311401 -87472152 - AluJo SINE Alu -31 281 11 1370 142 36 43 chr11 63311653 63311853 -87471700 + L1MA4A LINE L1 6022 6221 -82 2424 74 0 26 chr11 63311853 63312164 -87471389 - AluSx SINE Alu -9 303 1 1370 142 36 43 chr11 63312164 63312244 -87471309 + L1MA4A LINE L1 6221 6300 -3 588 212 65 55 chr11 63312325 63312542 -87471011 - Charlie1 DNA MER1_type -297 2464 2246 1224 159 0 0 chr11 63312542 63312724 -87470829 + AluJb SINE Alu 122 303 -9 2034 154 3 0 chr11 63315435 63315740 -87467813 - AluJo SINE Alu -6 306 1 424 298 76 6 chr11 63316209 63316380 -87467173 - MER5A DNA MER1_type 0 189 7 185 203 68 68 chr11 63316518 63316577 -87466976 - MIR SINE MIR -170 92 34 615 186 0 0 chr11 63316627 63316729 -87466824 + FLAM_C SINE Alu 2 103 -40 2177 132 3 0 chr11 63316784 63317087 -87466466 + AluSx SINE Alu 1 304 -8 314 300 156 12 chr11 63317243 63317403 -87466150 + MIR SINE MIR 18 200 -62 698 103 14 89 chr11 63317813 63317939 -87465614 - Charlie1 DNA MER1_type -7 2754 2639 1778 190 0 7 chr11 63317939 63318229 -87465324 - AluJb SINE Alu -22 290 3 698 103 14 89 chr11 63318229 63318248 -87465305 - Charlie1 DNA MER1_type -122 2639 2620 * 1066 195 17 25 chr11 63318232 63318473 -87465080 - Charlie1 DNA MER1_type -2522 239 1 1371 12 0 0 chr11 63318501 63318663 -87464890 + L1PA2 LINE L1 5993 6154 -1 198 0 0 0 chr11 63318671 63318693 -87464860 + (A)n Simple_repeat Simple_repeat 1 22 0 435 159 187 9 chr11 63318693 63318800 -87464753 + MIR SINE MIR 20 145 -117 277 314 88 0 chr11 63318848 63318950 -87464603 - MIR SINE MIR -78 184 74 2119 100 62 3 chr11 63319058 63319349 -87464204 - AluSx SINE Alu -4 308 1 2384 94 3 0 chr11 63319351 63319648 -87463905 - AluSp SINE Alu -15 298 1 2496 50 3 7 chr11 63319657 63319957 -87463596 - AluY SINE Alu -12 299 1 195 260 156 31 chr11 63320610 63320706 -87462847 + MIR SINE MIR 38 145 -63 263 231 116 8 chr11 63322664 63322785 -87460768 - Charlie8 DNA MER1_type -2237 180 47 420 297 153 29 chr11 63323569 63323778 -87459775 + MIR SINE MIR 25 259 -3 712 170 29 64 chr11 63324413 63324584 -87458969 - FRAM SINE Alu 0 166 2 2387 78 0 16 chr11 63324687 63324996 -87458557 + AluY SINE Alu 1 304 -7 562 250 95 25 chr11 63324996 63325196 -87458357 + MIR SINE MIR 16 229 -33 210 331 121 0 chr11 63326701 63326825 -87456728 - MIR SINE MIR -116 146 8 287 269 134 17 chr11 63327114 63327233 -87456320 + MIR SINE MIR 13 145 -117 372 303 104 64 chr11 63328490 63328789 -87454764 + L2 LINE L2 2924 3239 -33 1836 141 35 35 chr11 63328789 63329164 -87454389 + THE1C LTR MaLR 1 375 0 372 303 104 64 chr11 63329164 63329191 -87454362 + L2 LINE L2 3239 3263 -9 999 223 145 31 chr11 63329195 63329554 -87453999 + L1MEc LINE L1 36 435 -5961 6187 217 40 32 chr11 63329565 63330511 -87453042 + L1MEc LINE L1 494 1430 -4966 2146 133 3 0 chr11 63330511 63330805 -87452748 + AluJo SINE Alu 1 295 -17 6187 217 40 32 chr11 63330805 63330888 -87452665 + L1MEc LINE L1 1430 1511 -4885 1717 185 0 52 chr11 63330888 63331217 -87452336 + AluJo SINE Alu 1 312 0 6187 217 40 32 chr11 63331217 63331993 -87451560 + L1MEc LINE L1 1511 2319 -4077 2061 126 17 10 chr11 63331993 63332294 -87451259 + AluSx SINE Alu 1 303 -9 6187 217 40 32 chr11 63332294 63332366 -87451187 + L1MEc LINE L1 2319 2389 -4007 4914 166 16 9 chr11 63332421 63333325 -87450228 - L1MB3 LINE L1 -20 6163 5254 1563 251 62 19 chr11 63333344 63333433 -87450120 + L1MEc LINE L1 2389 2473 -3742 2119 180 65 0 chr11 63333433 63333833 -87449720 + MSTB LTR MaLR 1 426 0 1563 251 62 19 chr11 63333833 63334226 -87449327 + L1MEc LINE L1 2473 2892 -3323 295 267 93 53 chr11 63334946 63335096 -87448457 + MER5A DNA MER1_type 6 161 -28 1143 66 0 7 chr11 63335202 63335338 -87448215 + AluSq/x SINE Alu 1 135 -178 719 22 0 0 chr11 63335338 63335429 -87448124 + AluYa5/8 SINE Alu 216 306 -4 1536 63 5 0 chr11 63335429 63335618 -87447935 + AluSx SINE Alu 121 310 -2 399 289 128 11 chr11 63335618 63335798 -87447755 + MIR SINE MIR 59 259 -3 276 297 43 36 chr11 63336594 63336753 -87446800 + MIR SINE MIR 19 175 -55 207 272 0 35 chr11 63336997 63337111 -87446442 + (CCG)n Simple_repeat Simple_repeat 3 112 0 490 188 90 5 chr11 63337687 63337849 -87445704 + LTR54B LTR ERV1 185 387 -111 447 200 53 0 chr11 63337850 63337945 -87445608 + MER57A-int LTR ERV1 7437 7536 -1 861 125 188 0 chr11 63337951 63338111 -87445442 + MER57A LTR ERV1 11 200 -203 2096 168 76 12 chr11 63338150 63338572 -87444981 - LTR45B LTR ERV1 -40 449 1 287 177 0 51 chr11 63338572 63338649 -87444904 + MER57A LTR ERV1 202 303 -131 922 133 0 8 chr11 63338656 63338784 -87444769 - FLAM_C SINE Alu -16 127 1 805 192 0 0 chr11 63338786 63338942 -87444611 + MER57A LTR ERV1 248 403 0 2526 75 3 0 chr11 63339173 63339480 -87444073 - AluSq SINE Alu -5 308 1 701 194 101 55 chr11 63339605 63339822 -87443731 + MLT1J LTR MaLR 258 484 -27 187 286 159 32 chr11 63340566 63340692 -87442861 - L2 LINE L2 -1 3312 3171 2218 117 3 0 chr11 63341024 63341324 -87442229 - AluY SINE Alu -10 301 1 8119 41 3 10 chr11 63341464 63343016 -87440537 - SVA Other Other -800 1386 1 285 89 0 0 chr11 63343019 63343064 -87440489 + (GGGAGA)n Simple_repeat Simple_repeat 5 49 0 672 293 37 46 chr11 63343156 63343608 -87439945 + MLT1J LTR MaLR 5 511 0 2119 108 0 7 chr11 63343669 63343957 -87439596 + AluSx SINE Alu 14 299 -13 712 199 136 30 chr11 63344315 63344551 -87439002 + MLT1I LTR MaLR 108 368 -41 1328 246 78 34 chr11 63344604 63344977 -87438576 + MLT1J LTR MaLR 39 439 -72 2278 80 0 18 chr11 63344977 63345290 -87438263 - AluSc SINE Alu 0 308 1 1328 246 78 34 chr11 63345290 63345361 -87438192 + MLT1J LTR MaLR 439 505 -6 811 241 40 70 chr11 63345571 63345870 -87437683 - LTR16A1 LTR ERVL 0 457 168 812 160 0 0 chr11 63346119 63346250 -87437303 - FLAM_A SINE Alu 0 133 3 2321 119 3 0 chr11 63346803 63347114 -87436439 + AluSx SINE Alu 1 312 0 1020 163 0 0 chr11 63347464 63347630 -87435923 - FRAM SINE Alu 0 166 1 319 377 15 15 chr11 63347920 63348119 -87435434 - L3 LINE CR1 -180 1397 1199 893 313 80 8 chr11 63348499 63348873 -87434680 + MLT1I LTR MaLR 7 407 -2 230 298 37 62 chr11 63348931 63349092 -87434461 + L2 LINE L2 2925 3081 -191 415 292 60 0 chr11 63349166 63349351 -87434202 - MER91A DNA MER1_type 0 196 1 633 274 38 0 chr11 63349543 63349700 -87433853 + MIR SINE MIR 9 171 -91 399 246 95 0 chr11 63349782 63349908 -87433645 - L2 LINE L2 -252 3061 2924 211 349 93 8 chr11 63351098 63351227 -87432326 + MIR3 SINE MIR 17 156 -52 240 294 69 0 chr11 63351282 63351384 -87432169 + MER117 DNA MER1_type 52 160 -37 2039 129 31 0 chr11 63352588 63352874 -87430679 - AluSx SINE Alu -16 296 2 30 59 0 0 chr11 63352885 63352936 -87430617 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr11 63352996 63353019 -87430534 + AT_rich Low_complexity Low_complexity 1 23 0 229 230 40 61 chr11 63353127 63353275 -87430278 - L1MC4 LINE L1 -288 7754 7610 2387 78 10 0 chr11 63353276 63353570 -87429983 + AluSq SINE Alu 1 297 -16 2448 139 21 58 chr11 63353636 63354008 -87429545 + L1MC1 LINE L1 5455 5808 -525 1983 156 0 25 chr11 63354008 63354322 -87429231 + AluJb SINE Alu 1 306 -6 2448 139 21 58 chr11 63354322 63354417 -87429136 + L1MC1 LINE L1 5808 5905 -428 478 156 10 10 chr11 63354421 63354517 -87429036 - L1MA5 LINE L1 -15 6285 6190 2610 150 17 32 chr11 63354518 63354586 -87428967 - L1MA5 LINE L1 -573 5727 5659 2465 86 3 10 chr11 63354586 63354900 -87428653 - AluSp SINE Alu -1 312 1 2610 150 17 32 chr11 63354900 63355646 -87427907 - L1MA5 LINE L1 -641 5659 4903 1847 115 8 4 chr11 63355646 63355899 -87427654 - AluSq SINE Alu -59 254 1 1409 127 213 16 chr11 63355900 63356144 -87427409 - AluSx SINE Alu -19 293 2 2610 150 17 32 chr11 63356144 63356220 -87427333 - L1MA5 LINE L1 -1396 4904 4849 2271 145 8 49 chr11 63356223 63356404 -87427149 + L1MC1 LINE L1 5880 6067 -266 2286 102 0 0 chr11 63356404 63356688 -87426865 - AluSq SINE Alu -29 284 1 2271 145 8 49 chr11 63356688 63356974 -87426579 + L1MC1 LINE L1 6067 6328 -5 335 291 22 22 chr11 63357259 63357393 -87426160 - L1MC4 LINE L1 -787 7255 7122 809 236 0 12 chr11 63357394 63357594 -87425959 - AluJb SINE Alu 0 318 121 2138 143 0 0 chr11 63357691 63357984 -87425569 - AluSx SINE Alu -19 293 1 341 259 69 53 chr11 63358007 63358138 -87425415 - L1MC5 LINE L1 -809 7152 7020 1830 151 10 23 chr11 63358207 63358511 -87425042 + AluJb SINE Alu 1 300 -12 362 232 11 21 chr11 63359093 63359188 -87424365 + Charlie8 DNA MER1_type 56 149 -2268 779 172 6 43 chr11 63359236 63359399 -87424154 + MER21A LTR ERV1 9 165 -766 * 1284 173 88 0 chr11 63359398 63359647 -87423906 + MER39 LTR ERV1 219 489 -218 1253 131 78 0 chr11 63359648 63359839 -87423714 - AluSg/x SINE Alu -18 292 87 1823 155 3 3 chr11 63359998 63360307 -87423246 + AluSx SINE Alu 14 322 0 880 154 0 7 chr11 63360435 63360578 -87422975 + FRAM SINE Alu 28 169 -7 266 295 96 30 chr11 63361089 63361165 -87422388 + L1ME LINE L1 5522 5592 -529 2431 82 3 3 chr11 63361165 63361470 -87422083 + AluSp SINE Alu 1 305 -8 266 295 96 30 chr11 63361470 63361559 -87421994 + L1ME LINE L1 5592 5698 -423 899 112 0 15 chr11 63361701 63361835 -87421718 - FLAM_C SINE Alu -1 132 1 1867 171 9 22 chr11 63361838 63362154 -87421399 - AluJo SINE Alu 0 312 1 350 220 73 18 chr11 63362231 63362340 -87421213 + L1MC4 LINE L1 7759 7873 -169 450 307 39 13 chr11 63362340 63362493 -87421060 + MIR SINE MIR 14 170 -92 732 228 12 12 chr11 63362511 63362682 -87420871 + L1MB7 LINE L1 6014 6184 0 314 267 23 0 chr11 63362703 63362789 -87420764 + MIR SINE MIR 148 235 -27 2555 62 0 3 chr11 63362805 63363113 -87420440 - AluY SINE Alu -4 307 1 27 49 0 0 chr11 63363588 63363629 -87419924 + AT_rich Low_complexity Low_complexity 1 41 0 1144 148 6 0 chr11 63363734 63363910 -87419643 - AluSg/x SINE Alu -3 309 133 188 0 74 0 chr11 63363910 63363937 -87419616 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2151 103 0 24 chr11 63363937 63364227 -87419326 - AluSg SINE Alu -27 283 1 1792 155 24 14 chr11 63364583 63364879 -87418674 - AluJo SINE Alu -12 300 2 2371 99 0 0 chr11 63364900 63365194 -87418359 + AluSq SINE Alu 1 294 -19 678 284 88 14 chr11 63365317 63365613 -87417940 + L2 LINE L2 2991 3308 -5 1849 143 22 80 chr11 63365704 63365769 -87417784 - MLT1B LTR MaLR 0 390 323 2013 146 13 29 chr11 63365769 63366084 -87417469 + AluJb SINE Alu 2 311 -1 1849 143 22 80 chr11 63366084 63366304 -87417249 - MLT1B LTR MaLR -67 323 92 2342 102 0 3 chr11 63366304 63366609 -87416944 - AluSx SINE Alu -8 304 1 1849 143 22 80 chr11 63366609 63366686 -87416867 - MLT1B LTR MaLR -298 92 51 3725 103 54 20 chr11 63366686 63367298 -87416255 - LTR10E LTR ERV1 0 633 1 1849 143 22 80 chr11 63367298 63367347 -87416206 - MLT1B LTR MaLR -339 51 1 628 182 35 71 chr11 63367387 63367585 -87415968 + L1MC4 LINE L1 6980 7170 -872 1372 190 119 4 chr11 63367589 63367858 -87415695 + AluSp SINE Alu 1 300 -13 397 94 0 0 chr11 63367864 63367917 -87415636 + AluSg/x SINE Alu 196 248 -52 1315 150 32 14 chr11 63367917 63367951 -87415602 + AluSg/x SINE Alu 85 117 -195 240 35 0 0 chr11 63367951 63367980 -87415573 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1315 150 32 14 chr11 63367980 63368165 -87415388 + AluSg/x SINE Alu 117 308 -4 1363 213 19 126 chr11 63368166 63368698 -87414855 + L1MC4 LINE L1 7503 8091 49 297 0 0 0 chr11 63368698 63368731 -87414822 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1816 109 0 8 chr11 63368733 63368980 -87414573 - AluSx SINE Alu -30 282 38 1363 213 19 126 chr11 63368980 63369031 -87414522 + L1MC4 LINE L1 7971 8026 -16 1969 147 7 7 chr11 63369032 63369332 -87414221 - AluJb SINE Alu -12 300 1 195 250 0 0 chr11 63369848 63369896 -87413657 - L2 LINE L2 -316 2956 2909 2438 107 0 0 chr11 63370247 63370557 -87412996 - AluSg SINE Alu 0 310 1 287 231 15 0 chr11 63372041 63372106 -87411447 + L1ME3A LINE L1 5629 5694 -476 2116 148 0 0 chr11 63372106 63372410 -87411143 + AluJb SINE Alu 1 304 -8 1079 141 5 50 chr11 63372417 63372507 -87411046 + L1MA5A LINE L1 6088 6181 -116 2121 107 7 17 chr11 63372507 63372805 -87410748 + AluSx SINE Alu 1 295 -17 1079 141 5 50 chr11 63372805 63372934 -87410619 + L1MA5A LINE L1 6181 6297 0 582 231 8 0 chr11 63372935 63373052 -87410501 + FLAM_C SINE Alu 1 118 -25 1413 256 30 38 chr11 63373084 63373581 -87409972 + L1ME3A LINE L1 5678 6170 0 244 202 164 19 chr11 63373779 63373883 -87409670 + L1ME4a LINE L1 6003 6121 0 335 308 50 17 chr11 63374582 63374702 -87408851 + MIR3 SINE MIR 40 163 -45 1708 244 109 24 chr11 63374945 63375485 -87408068 - MLT1E LTR MaLR -7 586 1 229 186 16 85 chr11 63376099 63376228 -87407325 + (CCCA)n Simple_repeat Simple_repeat 2 121 0 309 151 19 0 chr11 63376368 63376421 -87407132 - AluJ/FLAM SINE Alu -205 97 44 30 100 0 0 chr11 63376421 63376521 -87407032 + AT_rich Low_complexity Low_complexity 1 100 0 494 281 86 19 chr11 63376574 63376784 -87406769 - MIR SINE MIR -19 243 20 499 205 127 147 chr11 63376982 63377409 -87406144 - MER34C LTR ERV1 -15 527 112 1811 144 7 31 chr11 63377409 63377701 -87405852 - AluJo SINE Alu -16 296 12 499 205 127 147 chr11 63377701 63377809 -87405744 - MER34C LTR ERV1 -430 112 3 1829 167 0 7 chr11 63378327 63378615 -87404938 + AluJb SINE Alu 1 286 -26 26 0 0 0 chr11 63378618 63378644 -87404909 + AT_rich Low_complexity Low_complexity 1 26 0 232 205 0 0 chr11 63378865 63378904 -87404649 - L2 LINE L2 -20 3293 3255 241 226 333 0 chr11 63378962 63379055 -87404498 - MIR SINE MIR -39 223 100 205 273 78 13 chr11 63379070 63379147 -87404406 - MIR SINE MIR -94 168 87 183 0 0 0 chr11 63379557 63379582 -87403971 - L2 LINE L2 -218 3054 3030 242 128 0 0 chr11 63380738 63380777 -87402776 + L2 LINE L2 3223 3261 -11 234 291 101 0 chr11 63381333 63381412 -87402141 - MIR3 SINE MIR -9 199 113 361 227 27 109 chr11 63381476 63381696 -87401857 + L1MC4a LINE L1 5693 5894 -1914 203 274 0 0 chr11 63381698 63381749 -87401804 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 233 213 0 0 chr11 63381752 63381799 -87401754 + L1ME4a LINE L1 6003 6049 -72 2040 102 11 3 chr11 63381885 63382169 -87401384 - AluSx SINE Alu -18 294 9 580 263 71 59 chr11 63383036 63383314 -87400239 - MER102b DNA MER1_type -49 292 2 454 244 170 0 chr11 63383447 63383582 -87399971 + MIR SINE MIR 75 232 -30 206 219 0 0 chr11 63383586 63383627 -87399926 + (CAT)n Simple_repeat Simple_repeat 3 43 0 307 83 0 21 chr11 63383922 63383970 -87399583 - FLAM_A SINE Alu -10 123 77 1653 113 0 0 chr11 63383970 63384182 -87399371 - AluSx SINE Alu -100 212 1 470 281 16 68 chr11 63384496 63384688 -87398865 + MIR SINE MIR 43 224 -38 283 185 19 0 chr11 63384868 63384922 -87398631 + MER47A DNA MER2_type 1 55 -311 533 169 0 0 chr11 63384929 63385018 -87398535 + MER47A DNA MER2_type 277 365 -1 214 296 148 0 chr11 63385184 63385265 -87398288 - MIR SINE MIR -149 113 21 498 114 0 0 chr11 63385616 63385695 -87397858 + (CACCAT)n Simple_repeat Simple_repeat 3 81 0 660 241 78 21 chr11 63385707 63385898 -87397655 - MIR SINE MIR -41 221 20 463 262 33 0 chr11 63386069 63386191 -87397362 + MIR3 SINE MIR 81 206 -2 567 197 23 15 chr11 63387213 63387345 -87396208 - MER46C DNA MER2_type -143 195 63 624 248 19 6 chr11 63388375 63388536 -87395017 - MIR SINE MIR -50 212 50 756 235 203 0 chr11 63388866 63389147 -87394406 + MER46C DNA MER2_type 1 338 0 215 276 81 16 chr11 63389150 63389273 -87394280 + L2 LINE L2 2709 2839 -475 727 280 41 57 chr11 63389285 63389653 -87393900 + L2 LINE L2 2951 3312 -1 661 248 42 101 chr11 63390136 63390400 -87393153 + L2 LINE L2 2912 3143 -170 2521 80 0 0 chr11 63390400 63390701 -87392852 - AluSx SINE Alu -11 301 1 661 248 42 101 chr11 63390701 63390863 -87392690 + L2 LINE L2 3143 3313 0 656 216 97 40 chr11 63391020 63391236 -87392317 - MIR SINE MIR -14 248 25 274 337 30 18 chr11 63391642 63391811 -87391742 + MIR SINE MIR 15 185 -77 288 211 6 22 chr11 63392383 63392563 -87390990 + (CA)n Simple_repeat Simple_repeat 1 177 0 465 250 6 12 chr11 63392578 63392750 -87390803 + (CA)n Simple_repeat Simple_repeat 2 172 0 191 229 0 9 chr11 63392769 63392878 -87390675 + (CA)n Simple_repeat Simple_repeat 1 108 0 284 172 0 32 chr11 63392908 63393001 -87390552 + (CA)n Simple_repeat Simple_repeat 1 90 0 320 274 147 0 chr11 63393214 63393309 -87390244 - MIR SINE MIR -55 153 45 198 305 53 11 chr11 63393494 63393589 -87389964 + L3 LINE CR1 1413 1511 -66 2375 131 13 49 chr11 63393798 63394082 -87389471 - L1MC1 LINE L1 -5 6328 6066 2286 102 0 0 chr11 63394082 63394366 -87389187 + AluSq SINE Alu 1 284 -29 2375 131 13 49 chr11 63394366 63394547 -87389006 - L1MC1 LINE L1 -267 6066 5880 2508 155 25 18 chr11 63394550 63394626 -87388927 + L1M1 LINE L1 4849 4923 -1377 1426 131 213 16 chr11 63394626 63394870 -87388683 + AluSx SINE Alu 2 293 -19 1833 119 8 4 chr11 63394871 63395124 -87388429 + AluSq SINE Alu 1 254 -59 2508 155 25 18 chr11 63395124 63395768 -87387785 + L1M1 LINE L1 4922 5574 -726 180 111 0 0 chr11 63396005 63396032 -87387521 + (A)n Simple_repeat Simple_repeat 1 27 0 187 286 159 32 chr11 63396521 63396647 -87386906 - L2 LINE L2 -1 3312 3171 2200 118 3 16 chr11 63396960 63397275 -87386278 - AluY SINE Alu 0 311 1 8044 43 3 10 chr11 63397415 63398967 -87384586 - SVA Other Other -800 1385 1 306 67 0 0 chr11 63398970 63399015 -87384538 + (GGGAGA)n Simple_repeat Simple_repeat 5 49 0 667 293 37 46 chr11 63399107 63399559 -87383994 + MLT1J LTR MaLR 5 511 0 2242 103 3 10 chr11 63399620 63399921 -87383632 + AluSp SINE Alu 14 312 -1 418 183 0 0 chr11 63399921 63399992 -87383561 + L1MA5 LINE L1 5660 5730 -570 478 156 10 10 chr11 63399992 63400086 -87383467 + L1MA5 LINE L1 6190 6285 -15 2543 135 22 41 chr11 63400090 63400177 -87383376 - L1MC1 LINE L1 -428 5905 5818 1991 152 0 31 chr11 63400177 63400499 -87383054 - AluJb SINE Alu 0 312 1 2543 135 22 41 chr11 63400499 63400871 -87382682 - L1MC1 LINE L1 -515 5818 5455 2378 78 10 0 chr11 63400936 63401229 -87382324 - AluSq SINE Alu -17 296 1 229 230 40 61 chr11 63401230 63401378 -87382175 + L1MC4 LINE L1 7610 7754 -288 212 175 16 0 chr11 63401436 63401499 -87382054 + (TA)n Simple_repeat Simple_repeat 1 64 0 27 29 0 0 chr11 63401580 63401614 -87381939 + AT_rich Low_complexity Low_complexity 1 34 0 2084 129 28 0 chr11 63401625 63401912 -87381641 + AluSx SINE Alu 2 296 -16 240 294 69 0 chr11 63403116 63403218 -87380335 - MER117 DNA MER1_type -37 160 52 211 349 93 8 chr11 63403273 63403402 -87380151 - MIR3 SINE MIR -52 156 17 399 246 95 0 chr11 63404592 63404718 -87378835 + L2 LINE L2 2924 3061 -252 633 274 38 0 chr11 63404800 63404957 -87378596 - MIR SINE MIR -91 171 9 415 292 60 0 chr11 63405149 63405334 -87378219 + MER91A DNA MER1_type 1 196 0 230 298 37 62 chr11 63405408 63405569 -87377984 - L2 LINE L2 -191 3081 2925 906 310 80 8 chr11 63405627 63406001 -87377552 - MLT1I LTR MaLR -2 407 7 278 388 10 20 chr11 63406381 63406582 -87376971 + L3 LINE CR1 1199 1397 -180 1020 163 0 0 chr11 63406872 63407038 -87376515 + FRAM SINE Alu 1 166 0 2321 119 3 0 chr11 63407388 63407699 -87375854 - AluSx SINE Alu 0 312 1 812 160 0 0 chr11 63408252 63408383 -87375170 + FLAM_A SINE Alu 3 133 0 811 241 40 70 chr11 63408632 63408931 -87374622 + LTR16A1 LTR ERVL 168 457 0 1328 246 78 34 chr11 63409141 63409212 -87374341 - MLT1J LTR MaLR -6 505 439 2279 80 0 18 chr11 63409212 63409525 -87374028 + AluSc SINE Alu 1 308 0 1328 246 78 34 chr11 63409525 63409898 -87373655 - MLT1J LTR MaLR -72 439 39 723 198 144 29 chr11 63409951 63410194 -87373359 - MLT1I LTR MaLR -41 368 98 1536 163 12 0 chr11 63410569 63410814 -87372739 - AluSq SINE Alu -65 248 1 831 118 27 102 chr11 63414192 63414298 -87369255 + L1MC1 LINE L1 5726 5814 -519 1973 155 0 31 chr11 63414298 63414620 -87368933 + AluJb SINE Alu 1 312 0 831 118 27 102 chr11 63414620 63414699 -87368854 + L1MC1 LINE L1 5814 5897 -436 421 181 21 0 chr11 63414710 63414804 -87368749 - L1MA5 LINE L1 -15 6285 6190 821 121 0 96 chr11 63414806 63414872 -87368681 - L1M1 LINE L1 -575 5725 5654 1817 136 0 40 chr11 63414872 63415196 -87368357 - AluSx SINE Alu -1 311 1 821 121 0 96 chr11 63415196 63415295 -87368258 - L1M1 LINE L1 -646 5654 5576 621 264 35 11 chr11 63417725 63417959 -87365594 + L2 LINE L2 3073 3267 -5 308 322 68 62 chr11 63417961 63418253 -87365300 + L2 LINE L2 2979 3272 0 911 72 0 0 chr11 63418484 63418595 -87364958 - AluY SINE Alu -38 273 163 1779 163 7 3 chr11 63418610 63418893 -87364660 - AluJb SINE Alu -28 284 1 195 250 0 0 chr11 63419409 63419457 -87364096 - L2 LINE L2 -316 2956 2909 2438 107 0 0 chr11 63419808 63420118 -87363435 - AluSg SINE Alu 0 310 1 287 231 15 0 chr11 63421600 63421665 -87361888 + L1ME3A LINE L1 5629 5694 -476 2116 148 0 0 chr11 63421665 63421969 -87361584 + AluJb SINE Alu 1 304 -8 1079 141 5 50 chr11 63421976 63422066 -87361487 + L1MA5A LINE L1 6088 6181 -116 2121 107 7 17 chr11 63422066 63422364 -87361189 + AluSx SINE Alu 1 295 -17 1079 141 5 50 chr11 63422364 63422493 -87361060 + L1MA5A LINE L1 6181 6297 0 582 231 8 0 chr11 63422494 63422611 -87360942 + FLAM_C SINE Alu 1 118 -25 1413 256 30 38 chr11 63422643 63423140 -87360413 + L1ME3A LINE L1 5678 6170 0 297 298 56 28 chr11 63424145 63424253 -87359300 + MIR SINE MIR 44 153 -89 2012 220 103 22 chr11 63424502 63425044 -87358509 - MLT1E LTR MaLR -7 586 1 203 275 38 50 chr11 63425251 63425331 -87358222 + L2 LINE L2 3232 3310 -3 633 122 16 16 chr11 63425582 63425705 -87357848 + L1MA4A LINE L1 6181 6303 0 1688 185 14 7 chr11 63425706 63425992 -87357561 + AluJb SINE Alu 1 288 -24 207 69 0 0 chr11 63426102 63426131 -87357422 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 483 138 0 0 chr11 63426495 63426606 -87356947 - AluSg/x SINE Alu 0 312 219 4773 106 46 52 chr11 63426606 63427437 -87356116 - LTR12 LTR ERV1 0 826 1 1794 90 0 0 chr11 63427437 63427659 -87355894 - AluSq SINE Alu -91 222 1 310 300 111 28 chr11 63428354 63428534 -87355019 + L1M4 LINE L1 3107 3301 -2845 198 103 0 0 chr11 63429703 63429732 -87353821 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 228 206 0 44 chr11 63429741 63429809 -87353744 - L2 LINE L2 -19 3294 3230 245 275 14 29 chr11 63430145 63430214 -87353339 - L2 LINE L2 -575 2739 2672 368 335 30 34 chr11 63430295 63430528 -87353025 + MIR SINE MIR 14 245 -17 1031 272 80 45 chr11 63430534 63430983 -87352570 - L2 LINE L2 0 3313 2849 1912 102 8 0 chr11 63431014 63431268 -87352285 + AluSx SINE Alu 45 300 -12 405 284 93 38 chr11 63431993 63432176 -87351377 - L2 LINE L2 -7 3265 3073 559 143 0 0 chr11 63434075 63434159 -87349394 + AluS SINE Alu 2 85 -227 * 633 81 131 0 chr11 63434155 63434254 -87349299 - AluY SINE Alu -198 113 2 990 189 47 24 chr11 63434491 63434703 -87348850 - MER20 DNA MER1_type -2 217 1 335 307 43 37 chr11 63434781 63434944 -87348609 + MIR SINE MIR 7 170 -92 433 282 9 0 chr11 63435717 63435827 -87347726 + MER81 DNA DNA 1 111 -3 235 288 112 32 chr11 63436067 63436192 -87347361 + L2 LINE L2 3179 3313 0 337 350 28 7 chr11 63436946 63437089 -87346464 + MIR SINE MIR 47 192 -70 362 189 74 90 chr11 63437284 63437406 -87346147 - MER5B DNA MER1_type -48 130 11 418 157 0 0 chr11 63438369 63438439 -87345114 + Alu SINE Alu 225 294 -16 2409 104 0 0 chr11 63438511 63438810 -87344743 + AluSx SINE Alu 1 299 -13 252 282 68 8 chr11 63439210 63439327 -87344226 - MER103 DNA DNA -13 153 30 359 305 73 18 chr11 63439511 63439890 -87343663 + L2 LINE L2 2632 3034 -238 2227 116 3 0 chr11 63439891 63440185 -87343368 + AluSq SINE Alu 1 295 -18 592 260 78 10 chr11 63440190 63440382 -87343171 + L1MC1 LINE L1 5616 5820 -1988 2304 100 3 0 chr11 63440418 63440708 -87342845 - AluSg SINE Alu -19 291 1 437 293 43 28 chr11 63441275 63441557 -87341996 + LTR16C LTR ERVL 146 491 0 300 300 39 31 chr11 63441646 63441776 -87341777 + MIR SINE MIR 19 149 -59 2236 120 0 3 chr11 63441864 63442156 -87341397 - AluSg SINE Alu -17 293 3 306 273 146 24 chr11 63442475 63442551 -87341002 - MIR SINE MIR -63 199 134 2314 101 10 0 chr11 63442551 63442848 -87340705 + AluSx SINE Alu 1 300 -12 306 273 146 24 chr11 63442848 63442936 -87340617 - MIR SINE MIR -128 134 15 1687 180 0 11 chr11 63443260 63443544 -87340009 + AluJo SINE Alu 14 294 -18 528 249 57 38 chr11 63443678 63443954 -87339599 + LTR16A LTR ERVL 18 395 -55 2265 99 0 3 chr11 63443954 63444248 -87339305 + AluSq SINE Alu 1 293 -20 528 249 57 38 chr11 63444248 63444287 -87339266 + LTR16A LTR ERVL 395 432 -18 2455 95 0 14 chr11 63444364 63444734 -87338819 + L1PA13 LINE L1 5799 6163 0 365 247 0 0 chr11 63446179 63446256 -87337297 + MIR SINE MIR 78 154 -108 915 214 23 33 chr11 63446298 63446513 -87337040 + L1MC1 LINE L1 6121 6333 0 372 123 53 0 chr11 63446583 63446640 -87336913 - MER47A DNA MER2_type 0 366 307 2259 101 3 10 chr11 63446648 63446946 -87336607 + AluSx SINE Alu 1 296 -16 1404 214 45 0 chr11 63446968 63447113 -87336440 - AluJb SINE Alu -32 280 143 270 81 0 0 chr11 63447113 63447150 -87336403 + (TTCTG)n Simple_repeat Simple_repeat 4 40 0 1404 214 45 0 chr11 63447150 63447271 -87336282 - AluJb SINE Alu -169 143 2 827 234 75 14 chr11 63447272 63447550 -87336003 - MER47A DNA MER2_type -71 295 1 2061 136 17 0 chr11 63447619 63447913 -87335640 + AluSx SINE Alu 3 301 -11 446 218 0 0 chr11 63448009 63448110 -87335443 + L1MB8 LINE L1 6073 6173 -5 808 106 23 15 chr11 63448135 63448267 -87335286 + AluJ SINE Alu 1 133 -169 1246 104 11 33 chr11 63448322 63448504 -87335049 + AluJ SINE Alu 129 306 -6 2257 115 3 0 chr11 63448629 63448925 -87334628 - AluSx SINE Alu -15 297 1 396 256 122 57 chr11 63448982 63449198 -87334355 + MIR SINE MIR 20 245 -17 2164 157 38 40 chr11 63449477 63449709 -87333844 + L1MA7 LINE L1 5591 5822 -469 2229 99 11 0 chr11 63449709 63449991 -87333562 + AluSx SINE Alu 14 298 -14 2164 157 38 40 chr11 63449991 63450228 -87333325 + L1MA7 LINE L1 5822 6059 -232 259 148 33 0 chr11 63450231 63450292 -87333261 - Alu SINE Alu -1 301 239 354 276 23 0 chr11 63450347 63450434 -87333119 + MIR SINE MIR 58 146 -62 2603 52 0 3 chr11 63450614 63450921 -87332632 + AluY SINE Alu 1 306 -5 441 76 0 15 chr11 63451336 63451402 -87332151 + MADE1 DNA Mariner 16 80 0 231 230 288 14 chr11 63451456 63451595 -87331958 + MER5A DNA MER1_type 7 183 -6 2539 63 0 7 chr11 63451647 63451948 -87331605 + AluY SINE Alu 1 299 -12 2397 107 3 0 chr11 63452120 63452428 -87331125 + AluSx SINE Alu 1 309 -3 433 282 9 0 chr11 63453607 63453717 -87329836 + MER81 DNA DNA 1 111 -3 314 266 113 32 chr11 63453958 63454082 -87329471 + L2 LINE L2 3139 3272 0 333 350 28 7 chr11 63454836 63454979 -87328574 + MIR SINE MIR 47 192 -70 362 189 74 90 chr11 63455174 63455296 -87328257 - MER5B DNA MER1_type -48 130 11 398 155 0 14 chr11 63456258 63456329 -87327224 + Alu SINE Alu 226 295 -6 2418 103 0 0 chr11 63456401 63456701 -87326852 + AluSx SINE Alu 1 300 -12 275 274 68 8 chr11 63457101 63457218 -87326335 - MER103 DNA DNA -13 153 30 575 318 78 37 chr11 63457402 63457781 -87325772 + L2 LINE L2 2632 3055 -217 2307 97 0 10 chr11 63457781 63458081 -87325472 + AluSq SINE Alu 1 297 -16 575 318 78 37 chr11 63458081 63458307 -87325246 + L2 LINE L2 3055 3270 -2 212 300 0 14 chr11 63458519 63458589 -87324964 - L2 LINE L2 -4 3268 3200 366 214 71 20 chr11 63459000 63459098 -87324455 + L1ME3A LINE L1 5513 5615 -506 2064 110 3 39 chr11 63459098 63459406 -87324147 + AluSx SINE Alu 1 297 -15 746 124 8 0 chr11 63459406 63459535 -87324018 + L1MA5A LINE L1 6168 6297 0 548 208 13 54 chr11 63459536 63459685 -87323868 + FLAM_C SINE Alu 1 143 0 1501 254 24 34 chr11 63459686 63460182 -87323371 + L1ME3A LINE L1 5680 6170 0 244 202 164 19 chr11 63460383 63460487 -87323066 + L1ME4a LINE L1 6003 6121 0 335 308 50 17 chr11 63461186 63461306 -87322247 + MIR3 SINE MIR 40 163 -45 2006 220 107 22 chr11 63461549 63462089 -87321464 - MLT1E LTR MaLR -7 586 1 203 275 38 50 chr11 63462296 63462376 -87321177 + L2 LINE L2 3232 3310 -3 668 139 8 0 chr11 63462630 63462752 -87320801 + L1MA4A LINE L1 6181 6303 0 201 69 0 0 chr11 63462743 63462753 -87320800 + (GA)n Simple_repeat Simple_repeat 2 11 -19 1828 171 14 7 chr11 63462753 63463046 -87320507 + AluJb SINE Alu 1 295 -17 201 69 0 0 chr11 63463046 63463064 -87320489 + (GA)n Simple_repeat Simple_repeat 10 30 0 198 71 0 0 chr11 63463149 63463177 -87320376 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 531 160 0 0 chr11 63463572 63463666 -87319887 - AluSg/x SINE Alu 0 312 219 1669 77 0 0 chr11 63463666 63463888 -87319665 - LTR12 LTR ERV1 0 714 493 1015 156 0 6 chr11 63463889 63464056 -87319497 - pTR5 LTR ERV1 -921 1517 1352 1662 104 0 0 chr11 63464064 63464286 -87319267 - AluSq SINE Alu -91 222 1 368 304 142 25 chr11 63464987 63465227 -87318326 + L1M4c LINE L1 947 1214 -5170 198 103 0 0 chr11 63466416 63466445 -87317108 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 236 206 0 44 chr11 63466454 63466522 -87317031 - L2 LINE L2 -19 3294 3230 244 275 14 29 chr11 63466858 63466927 -87316626 - L2 LINE L2 -575 2739 2672 397 335 30 34 chr11 63467008 63467241 -87316312 + MIR SINE MIR 14 245 -17 1025 273 83 42 chr11 63467247 63467694 -87315859 - L2 LINE L2 0 3313 2849 1800 102 8 0 chr11 63467725 63467979 -87315574 + AluSx SINE Alu 45 300 -12 423 284 93 38 chr11 63468705 63468888 -87314665 - L2 LINE L2 -7 3265 3073 575 155 0 0 chr11 63470786 63470870 -87312683 + AluS SINE Alu 2 85 -228 * 674 81 131 0 chr11 63470866 63470965 -87312588 - AluY SINE Alu -198 113 2 1084 189 47 24 chr11 63471202 63471414 -87312139 - MER20 DNA MER1_type -2 217 1 407 287 12 38 chr11 63471483 63471655 -87311898 + MIR SINE MIR 5 170 -75 446 282 9 0 chr11 63472426 63472536 -87311017 + MER81 DNA DNA 1 111 -3 288 288 104 24 chr11 63472776 63472901 -87310652 + L2 LINE L2 3179 3313 0 347 350 28 7 chr11 63473655 63473798 -87309755 + MIR SINE MIR 47 192 -70 372 212 68 83 chr11 63473993 63474125 -87309428 - MER5B DNA MER1_type -48 130 1 447 157 0 0 chr11 63475079 63475149 -87308404 + Alu SINE Alu 226 295 -16 2286 106 0 0 chr11 63475221 63475524 -87308029 + AluSx SINE Alu 1 303 -9 294 299 60 0 chr11 63475922 63476039 -87307514 - MER103 DNA DNA -13 153 30 394 309 70 15 chr11 63476223 63476602 -87306951 + L2 LINE L2 2632 3034 -238 2096 116 3 0 chr11 63476603 63476897 -87306656 + AluSq SINE Alu 1 295 -18 609 285 70 18 chr11 63476902 63477130 -87306423 + L1MC1 LINE L1 5616 5855 -1953 2168 100 3 0 chr11 63477130 63477420 -87306133 - AluSg SINE Alu -19 291 1 475 293 43 28 chr11 63477987 63478269 -87305284 + LTR16C LTR ERVL 146 491 0 311 300 39 31 chr11 63478358 63478488 -87305065 + MIR SINE MIR 19 149 -59 2098 122 0 3 chr11 63478574 63478868 -87304685 - AluSg SINE Alu -15 295 3 324 309 133 12 chr11 63479187 63479263 -87304290 - MIR SINE MIR -63 199 134 2178 101 10 0 chr11 63479263 63479560 -87303993 + AluSx SINE Alu 1 300 -12 324 309 133 12 chr11 63479560 63479648 -87303905 - MIR SINE MIR -128 134 15 1594 179 0 11 chr11 63479972 63480257 -87303296 + AluJo SINE Alu 14 295 -17 566 249 57 38 chr11 63480388 63480664 -87302889 + LTR16A LTR ERVL 18 395 -55 2114 102 0 3 chr11 63480664 63480958 -87302595 + AluSq SINE Alu 1 293 -20 566 249 57 38 chr11 63480958 63480997 -87302556 + LTR16A LTR ERVL 395 432 -18 2633 95 0 14 chr11 63481074 63481444 -87302109 + L1PA13 LINE L1 5799 6163 0 372 247 0 0 chr11 63482894 63482971 -87300582 + MIR SINE MIR 78 154 -108 924 214 23 33 chr11 63483013 63483228 -87300325 + L1MC1 LINE L1 6121 6333 0 370 123 53 0 chr11 63483298 63483355 -87300198 - Tigger5 DNA MER2_type 0 2323 2264 1707 116 94 4 chr11 63483363 63483640 -87299913 + AluSx SINE Alu 1 302 -10 2038 132 3 0 chr11 63484766 63485077 -87298476 + AluSq SINE Alu 2 313 0 1955 111 0 10 chr11 63485592 63485881 -87297672 - AluSx SINE Alu -13 299 14 698 297 37 45 chr11 63485942 63486398 -87297155 - MLT1J LTR MaLR 0 511 1 285 89 0 0 chr11 63486486 63486531 -87297022 + (TCTCCC)n Simple_repeat Simple_repeat 5 49 0 3191 42 0 44 chr11 63486534 63486984 -87296569 + SVA Other Other 1 430 -956 1093 103 6 6 chr11 63486985 63487141 -87296412 - AluSg SINE Alu -154 156 1 363 303 60 51 chr11 63487142 63487376 -87296177 + L1MC5 LINE L1 7504 7739 -222 234 0 0 0 chr11 63487391 63487417 -87296136 + (TA)n Simple_repeat Simple_repeat 1 26 0 28 29 0 0 chr11 63487497 63487532 -87296021 + AT_rich Low_complexity Low_complexity 1 35 0 1959 129 28 0 chr11 63487543 63487830 -87295723 + AluSx SINE Alu 2 296 -16 267 320 65 20 chr11 63489034 63489187 -87294366 - MER117 DNA MER1_type -37 160 1 222 360 88 7 chr11 63489191 63489327 -87294226 - MIR3 SINE MIR -52 156 10 407 246 95 0 chr11 63490510 63490636 -87292917 + L2 LINE L2 2924 3061 -252 636 274 38 0 chr11 63490718 63490875 -87292678 - MIR SINE MIR -91 171 9 486 303 60 0 chr11 63491067 63491252 -87292301 + MER91A DNA MER1_type 1 196 0 244 311 31 56 chr11 63491326 63491487 -87292066 - L2 LINE L2 -191 3081 2925 925 313 80 8 chr11 63491545 63491919 -87291634 - MLT1I LTR MaLR -2 407 7 248 316 31 10 chr11 63492299 63492397 -87291156 + L3 LINE CR1 1199 1298 -279 2091 130 0 3 chr11 63493665 63493966 -87289587 + AluSx SINE Alu 1 300 -12 409 340 63 32 chr11 63495444 63495783 -87287770 + L2 LINE L2 2531 2889 -383 1918 134 44 0 chr11 63495783 63496081 -87287472 - AluSq SINE Alu -2 311 1 409 340 63 32 chr11 63496081 63496250 -87287303 + L2 LINE L2 2889 3051 -221 405 322 46 0 chr11 63496250 63496402 -87287151 + L1MC4a LINE L1 5704 5862 -1946 837 143 8 8 chr11 63496464 63496597 -87286956 + FLAM_C SINE Alu 1 133 0 485 282 47 24 chr11 63496619 63496789 -87286764 + MIR SINE MIR 78 251 -11 1533 196 26 64 chr11 63496870 63497058 -87286495 + MLT1A2 LTR MaLR 1 168 -206 1807 120 30 43 chr11 63497058 63497359 -87286194 + AluSx SINE Alu 11 307 -5 1533 196 26 64 chr11 63497359 63497558 -87285995 + MLT1A2 LTR MaLR 168 373 -1 2118 113 0 0 chr11 63498144 63498436 -87285117 - AluSx SINE Alu -20 292 1 401 351 112 5 chr11 63498456 63498644 -87284909 + MIR SINE MIR 38 245 -17 2081 120 0 26 chr11 63499244 63499552 -87284001 - AluSx SINE Alu -12 300 1 341 343 67 11 chr11 63499709 63499907 -87283646 - MIR3 SINE MIR -40 222 2 1538 188 0 26 chr11 63499967 63500270 -87283283 - AluJo SINE Alu -17 295 1 746 168 9 0 chr11 63500331 63500444 -87283109 - FLAM_C SINE Alu -17 116 3 2207 108 3 0 chr11 63500457 63500762 -87282791 - AluSx SINE Alu -4 308 3 622 96 0 0 chr11 63502345 63502428 -87281125 - AluSg/x SINE Alu -14 296 214 2391 84 0 0 chr11 63503269 63503579 -87279974 + AluSg SINE Alu 1 310 0 262 241 87 22 chr11 63503591 63503711 -87279842 + MIR SINE MIR 61 144 -64 1856 128 43 16 chr11 63503798 63504102 -87279451 + AluSx SINE Alu 1 312 0 207 240 160 30 chr11 63504200 63504235 -87279318 + MER5A DNA MER1_type 77 106 -83 1745 176 0 3 chr11 63504235 63504537 -87279016 - AluJo SINE Alu -11 301 1 207 240 160 30 chr11 63504537 63504601 -87278952 + MER5A DNA MER1_type 106 189 0 208 111 56 0 chr11 63504782 63504818 -87278735 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 938 229 0 0 chr11 63504878 63505061 -87278492 + MER5A DNA MER1_type 2 184 -5 1902 129 3 17 chr11 63506094 63506396 -87277157 - AluSc SINE Alu -11 298 1 2344 53 0 0 chr11 63507143 63507454 -87276099 - AluY SINE Alu 0 311 1 1822 61 9 0 chr11 63507454 63507683 -87275870 - AluSp SINE Alu -16 297 67 1585 101 9 0 chr11 63507785 63508004 -87275549 - AluSp SINE Alu -92 221 1 2277 82 0 10 chr11 63508013 63508316 -87275237 - AluSx SINE Alu -12 300 1 252 294 68 103 chr11 63508680 63508997 -87274556 - L1ME4a LINE L1 -8 6113 5813 2132 104 13 0 chr11 63508997 63509296 -87274257 + AluSx SINE Alu 2 304 -8 252 294 68 103 chr11 63509296 63509403 -87274150 - L1ME4a LINE L1 -308 5813 5704 2200 87 0 10 chr11 63509408 63509708 -87273845 + AluSg SINE Alu 1 297 -13 207 0 0 0 chr11 63510368 63510391 -87273162 + (T)n Simple_repeat Simple_repeat 1 23 0 446 282 9 0 chr11 63511485 63511595 -87271958 + MER81 DNA DNA 1 111 -3 288 288 104 24 chr11 63511835 63511960 -87271593 + L2 LINE L2 3179 3313 0 347 350 28 7 chr11 63512714 63512857 -87270696 + MIR SINE MIR 47 192 -70 372 212 68 83 chr11 63513052 63513184 -87270369 - MER5B DNA MER1_type -48 130 1 458 145 0 0 chr11 63514136 63514205 -87269348 + AluS SINE Alu 224 292 -17 2217 98 10 0 chr11 63514277 63514582 -87268971 + AluSx SINE Alu 1 308 -4 295 299 60 0 chr11 63514984 63515101 -87268452 - MER103 DNA DNA -13 153 30 626 325 68 43 chr11 63515285 63515664 -87267889 + L2 LINE L2 2632 3051 -221 2170 97 0 10 chr11 63515664 63515964 -87267589 + AluSq SINE Alu 1 297 -16 626 325 68 43 chr11 63515964 63516190 -87267363 + L2 LINE L2 3051 3270 -2 217 300 0 14 chr11 63516402 63516472 -87267081 - L2 LINE L2 -4 3268 3200 372 214 71 20 chr11 63516883 63516981 -87266572 + L1ME3A LINE L1 5513 5615 -506 1933 115 3 39 chr11 63516981 63517293 -87266260 + AluSx SINE Alu 1 301 -11 779 120 8 0 chr11 63517293 63517418 -87266135 + L1MA5A LINE L1 6172 6297 0 611 208 13 54 chr11 63517419 63517568 -87265985 + FLAM_C SINE Alu 1 143 0 1237 279 26 35 chr11 63517569 63518031 -87265522 + L1ME3A LINE L1 5680 6137 -33 270 379 0 0 chr11 63518139 63518316 -87265237 + G-rich Low_complexity Low_complexity 1 177 0 291 302 6 38 chr11 63518342 63518501 -87265052 + G-rich Low_complexity Low_complexity 4 157 0 284 306 6 25 chr11 63518545 63518705 -87264848 + GA-rich Low_complexity Low_complexity 2 158 0 380 127 34 25 chr11 63518705 63518823 -87264730 + G-rich Low_complexity Low_complexity 1 119 0 558 315 23 23 chr11 63519121 63519340 -87264213 - MIR SINE MIR -24 238 20 531 242 21 63 chr11 63519361 63519551 -87264002 - MIR SINE MIR -44 218 37 1410 206 28 3 chr11 63519803 63520089 -87263464 - AluJo SINE Alu -15 297 5 217 337 11 11 chr11 63520563 63520658 -87262895 - L2 LINE L2 -32 3240 3146 531 237 216 10 chr11 63520857 63521051 -87262502 - LTR16A1 LTR ERVL -2 455 222 484 245 7 9 chr11 63521756 63522786 -87260767 + (TG)n Simple_repeat Simple_repeat 1 1028 0 295 250 9 43 chr11 63522789 63522905 -87260648 + (TATG)n Simple_repeat Simple_repeat 4 115 0 214 240 8 8 chr11 63522909 63523034 -87260519 + (TG)n Simple_repeat Simple_repeat 1 125 0 2193 94 0 3 chr11 63523427 63523726 -87259827 + AluSc SINE Alu 1 298 -11 1759 138 22 55 chr11 63523734 63524046 -87259507 + AluJb SINE Alu 1 302 -10 435 76 0 15 chr11 63524342 63524408 -87259145 + MADE1 DNA Mariner 16 80 0 246 230 288 14 chr11 63524462 63524601 -87258952 + MER5A DNA MER1_type 7 183 -6 2370 66 0 7 chr11 63524653 63524954 -87258599 + AluY SINE Alu 1 299 -12 2260 107 3 0 chr11 63525126 63525434 -87258119 + AluSx SINE Alu 1 309 -3 224 296 197 0 chr11 63526008 63526150 -87257403 - MIR SINE MIR -49 213 44 461 268 73 62 chr11 63526262 63526301 -87257252 - L1ME4a LINE L1 -2 6119 6082 2096 121 0 0 chr11 63526301 63526599 -87256954 - AluSx SINE Alu -14 298 1 461 268 73 62 chr11 63526599 63526739 -87256814 - L1ME4a LINE L1 -39 6082 5934 191 88 29 0 chr11 63526739 63526773 -87256780 + (TA)n Simple_repeat Simple_repeat 1 35 0 461 268 73 62 chr11 63526773 63526864 -87256689 - L1ME4a LINE L1 -187 5934 5845 230 202 38 55 chr11 63527970 63528153 -87255400 + (GCGTG)n Simple_repeat Simple_repeat 1 180 0 184 153 0 34 chr11 63528166 63528225 -87255328 + (CGGG)n Simple_repeat Simple_repeat 3 59 0 249 204 45 40 chr11 63528244 63528420 -87255133 + (GTGTG)n Simple_repeat Simple_repeat 2 178 0 619 154 98 32 chr11 63528820 63528943 -87254610 - FLAM_C SINE Alu 0 133 3 1929 101 23 29 chr11 63528950 63529256 -87254297 - AluSq SINE Alu -9 304 1 351 238 90 33 chr11 63529256 63529378 -87254175 + L3 LINE CR1 907 1035 -542 444 342 42 16 chr11 63529488 63529678 -87253875 + L3 LINE CR1 1373 1567 -10 24 32 0 0 chr11 63531314 63531345 -87252208 + GC_rich Low_complexity Low_complexity 1 31 0 1206 125 0 0 chr11 63532154 63532322 -87251231 - AluSg/x SINE Alu -11 299 132 1996 134 3 0 chr11 63532322 63532629 -87250924 - AluSp SINE Alu -4 309 2 800 237 75 18 chr11 63532630 63532909 -87250644 - MER47A DNA MER2_type -71 295 1 1905 142 17 0 chr11 63532978 63533274 -87250279 + AluSx SINE Alu 3 303 -9 1220 155 0 0 chr11 63533499 63533680 -87249873 - AluSx SINE Alu -131 181 1 306 356 67 11 chr11 63533837 63534035 -87249518 - MIR3 SINE MIR -40 222 2 1445 201 0 26 chr11 63534095 63534398 -87249155 - AluJo SINE Alu -17 295 1 746 168 9 0 chr11 63534459 63534572 -87248981 - FLAM_C SINE Alu -17 116 3 1671 158 3 13 chr11 63534585 63534896 -87248657 - AluSx SINE Alu -4 308 1 214 268 11 63 chr11 63535586 63535776 -87247777 + (GTGTG)n Simple_repeat Simple_repeat 1 180 0 215 161 49 37 chr11 63535839 63535920 -87247633 + (TAGTG)n Simple_repeat Simple_repeat 3 84 0 553 193 0 0 chr11 63538691 63538779 -87244774 + FRAM SINE Alu 59 146 -30 482 149 234 0 chr11 63538801 63538895 -87244658 - FLAM_A SINE Alu -17 116 1 463 232 51 29 chr11 63538895 63539033 -87244520 - MIR SINE MIR -108 154 14 546 219 8 23 chr11 63539060 63539188 -87244365 + MIR SINE MIR 12 137 -125 2038 117 0 3 chr11 63539246 63539537 -87244016 + AluSg SINE Alu 1 290 -20 1065 178 0 0 chr11 63541108 63541299 -87242254 + AluSg/x SINE Alu 114 304 -6 322 333 117 18 chr11 63542747 63542918 -87240635 - MER5A DNA MER1_type 0 189 2 441 174 23 0 chr11 63542934 63543009 -87240544 + MER5A DNA MER1_type 1 80 -109 1680 144 3 41 chr11 63543009 63543223 -87240330 + AluSx SINE Alu 1 203 -109 1967 133 7 0 chr11 63543223 63543516 -87240037 + AluSq SINE Alu 2 296 -17 1680 144 3 41 chr11 63543516 63543593 -87239960 + AluSx SINE Alu 203 281 -31 224 241 35 0 chr11 63543642 63543729 -87239824 + MER5A DNA MER1_type 62 151 -38 311 198 93 23 chr11 63545871 63545957 -87237596 - L1MC5 LINE L1 -26 7935 7844 961 269 6 48 chr11 63546400 63546712 -87236841 - AluJb SINE Alu -1 311 13 207 295 36 9 chr11 63546966 63547078 -87236475 + (TGGG)n Simple_repeat Simple_repeat 1 115 0 332 230 18 53 chr11 63547312 63547425 -87236128 - FLAM_C SINE Alu -3 130 22 215 77 0 26 chr11 63548932 63548971 -87234582 + (TG)n Simple_repeat Simple_repeat 2 39 0 423 264 58 13 chr11 63549510 63549665 -87233888 + MER5B DNA MER1_type 7 168 -10 568 247 78 24 chr11 63550100 63550266 -87233287 - MER58B DNA MER1_type 0 341 167 1035 0 90 0 chr11 63550440 63550595 -87232958 + (TTATG)n Simple_repeat Simple_repeat 2 170 0 2083 107 0 0 chr11 63550595 63550876 -87232677 - AluSg SINE Alu -29 281 1 301 191 177 0 chr11 63550880 63550962 -87232591 + MIR SINE MIR 60 156 -62 186 343 58 23 chr11 63553317 63553489 -87230064 + L2 LINE L2 392 569 -2745 2490 277 215 26 chr11 63553593 63555569 -87227984 + L2 LINE L2 871 3251 -62 359 143 57 0 chr11 63555572 63555642 -87227911 + L1MA9 LINE L1 6239 6312 0 301 313 14 6 chr11 63557678 63557786 -87225767 + MIR SINE MIR 44 153 -89 1961 231 103 22 chr11 63558035 63558577 -87224976 - MLT1E LTR MaLR -7 586 1 212 371 23 23 chr11 63558732 63558864 -87224689 + L2 LINE L2 3138 3269 -3 699 149 8 0 chr11 63559115 63559236 -87224317 + L1MA4A LINE L1 6181 6302 -1 1512 188 14 11 chr11 63559239 63559526 -87224027 + AluJb SINE Alu 1 288 -24 499 191 0 0 chr11 63560060 63560154 -87223399 - AluSg/x SINE Alu 0 312 219 1661 81 0 0 chr11 63560154 63560376 -87223177 - LTR12 LTR ERV1 0 714 493 1015 156 0 6 chr11 63560377 63560544 -87223009 - pTR5 LTR ERV1 -921 1517 1352 1621 103 0 5 chr11 63560552 63560775 -87222778 - AluSq SINE Alu -91 222 1 1547 222 95 18 chr11 63561899 63562413 -87221140 - LTR10E LTR ERV1 -79 554 1 342 62 0 21 chr11 63562414 63562462 -87221091 - MLT1C LTR MaLR -420 47 1 624 182 35 71 chr11 63562502 63562700 -87220853 + L1MC4 LINE L1 6980 7170 -872 1273 190 119 4 chr11 63562704 63562973 -87220580 + AluSp SINE Alu 1 300 -13 412 94 0 0 chr11 63562979 63563032 -87220521 + AluSp/q SINE Alu 198 250 -63 1215 154 32 14 chr11 63563032 63563066 -87220487 + AluSg/x SINE Alu 85 117 -195 240 35 0 0 chr11 63563066 63563095 -87220458 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1215 154 32 14 chr11 63563095 63563280 -87220273 + AluSg/x SINE Alu 117 308 -4 1371 236 30 47 chr11 63563281 63563752 -87219801 + L1MC4 LINE L1 7503 7965 -77 2237 55 0 17 chr11 63563841 63564134 -87219419 - AluY SINE Alu -22 289 2 2285 71 7 0 chr11 63564135 63564430 -87219123 - AluSp SINE Alu -16 297 1 363 367 112 5 chr11 63564689 63564877 -87218676 - MIR SINE MIR -17 245 38 1814 143 29 0 chr11 63564914 63565186 -87218367 + AluSx SINE Alu 17 296 -16 264 323 60 0 chr11 63566358 63566491 -87217062 - MER117 DNA MER1_type -5 192 52 220 326 101 16 chr11 63566546 63566675 -87216878 - MIR3 SINE MIR -52 156 17 208 111 56 0 chr11 63568449 63568485 -87215068 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 927 229 0 0 chr11 63568545 63568728 -87214825 + MER5A DNA MER1_type 2 184 -5 380 337 63 32 chr11 63571241 63571580 -87211973 + L2 LINE L2 2531 2889 -383 1999 135 47 0 chr11 63571580 63571877 -87211676 - AluSq SINE Alu -2 311 1 380 337 63 32 chr11 63571877 63572046 -87211507 + L2 LINE L2 2889 3051 -221 399 322 46 0 chr11 63572046 63572198 -87211355 + L1MC4a LINE L1 5704 5862 -1946 846 128 8 23 chr11 63572260 63572393 -87211160 + FLAM_C SINE Alu 1 131 -12 477 282 47 24 chr11 63572415 63572585 -87210968 + MIR SINE MIR 78 251 -11 572 157 58 111 chr11 63572666 63572838 -87210715 + MLT1A2 LTR MaLR 1 163 -211 848 105 8 15 chr11 63572844 63572977 -87210576 + FLAM_C SINE Alu 1 132 -1 266 295 96 30 chr11 63573119 63573208 -87210345 - L1ME LINE L1 -423 5698 5616 2411 85 3 3 chr11 63573208 63573513 -87210040 - AluSp SINE Alu -8 305 1 266 295 96 30 chr11 63573513 63573589 -87209964 - L1ME LINE L1 -505 5616 5522 2173 114 3 16 chr11 63574427 63574735 -87208818 + AluSc SINE Alu 1 304 -5 2360 81 7 0 chr11 63575395 63575691 -87207862 - AluSx SINE Alu -14 298 1 655 104 31 0 chr11 63575694 63575790 -87207763 - AluSq/x SINE Alu -178 134 36 747 241 241 31 chr11 63576133 63576400 -87207153 - L2 LINE L2 -5 3308 2962 1982 161 6 3 chr11 63576400 63576711 -87206842 - AluSx SINE Alu 0 312 1 747 241 241 31 chr11 63576711 63576762 -87206791 - L2 LINE L2 -351 2962 2923 676 233 79 25 chr11 63577426 63577628 -87205925 - MIR SINE MIR -19 243 31 221 284 14 0 chr11 63578021 63578095 -87205458 - L2 LINE L2 -1 3312 3238 2344 113 0 0 chr11 63578119 63578420 -87205133 - AluSx SINE Alu -11 301 1 247 289 68 103 chr11 63578784 63579101 -87204452 - L1ME4a LINE L1 -8 6113 5813 2267 104 13 0 chr11 63579101 63579400 -87204153 + AluSx SINE Alu 2 304 -8 247 289 68 103 chr11 63579400 63579507 -87204046 - L1ME4a LINE L1 -308 5813 5704 1101 196 0 5 chr11 63579512 63579721 -87203832 + AluSg SINE Alu 1 208 -102 491 314 86 52 chr11 63579866 63580597 -87202956 - L1M4c LINE L1 -1187 1556 803 1795 158 20 3 chr11 63580598 63580896 -87202657 - AluSx SINE Alu -9 303 1 701 194 101 55 chr11 63581021 63581238 -87202315 + MLT1J LTR MaLR 258 484 -27 187 286 159 32 chr11 63581982 63582108 -87201445 - L2 LINE L2 -1 3312 3171 2167 123 3 0 chr11 63582441 63582741 -87200812 - AluY SINE Alu -10 301 1 7748 50 3 10 chr11 63582881 63584435 -87199118 - SVA Other Other -800 1386 1 285 89 0 0 chr11 63584438 63584483 -87199070 + (GGGAGA)n Simple_repeat Simple_repeat 5 49 0 519 300 42 48 chr11 63584575 63585026 -87198527 + MLT1J LTR MaLR 5 511 0 2119 108 0 7 chr11 63585087 63585375 -87198178 + AluSx SINE Alu 14 299 -13 712 199 136 30 chr11 63585733 63585969 -87197584 + MLT1I LTR MaLR 108 368 -41 1328 246 78 34 chr11 63586022 63586395 -87197158 + MLT1J LTR MaLR 39 439 -72 2278 80 0 18 chr11 63586395 63586708 -87196845 - AluSc SINE Alu 0 308 1 1328 246 78 34 chr11 63586708 63586779 -87196774 + MLT1J LTR MaLR 439 505 -6 706 249 40 73 chr11 63586989 63587290 -87196263 - LTR16A1 LTR ERVL 0 457 167 812 160 0 0 chr11 63587540 63587671 -87195882 - FLAM_A SINE Alu 0 133 3 1993 139 4 0 chr11 63588236 63588517 -87195036 + AluSx SINE Alu 12 293 -19 448 261 0 0 chr11 63588669 63588813 -87194740 + AluJb SINE Alu 174 317 0 353 260 4 26 chr11 63588814 63588948 -87194605 + L1MC5 LINE L1 7122 7236 -725 1469 155 18 18 chr11 63589233 63589511 -87194042 - L1MC1 LINE L1 -5 6328 6051 1516 206 28 3 chr11 63590659 63590945 -87192608 + AluJo SINE Alu 5 297 -15 557 235 7 15 chr11 63591197 63591333 -87192220 + MIR SINE MIR 37 171 -91 2036 116 23 23 chr11 63592002 63592304 -87191249 + AluSq SINE Alu 3 304 -9 573 180 55 31 chr11 63592311 63592439 -87191114 + FLAM_C SINE Alu 3 133 0 203 240 25 8 chr11 63592720 63592841 -87190712 + GA-rich Low_complexity Low_complexity 3 125 0 369 207 10 10 chr11 63592878 63593067 -87190486 + GA-rich Low_complexity Low_complexity 1 189 0 1677 179 28 14 chr11 63593202 63593492 -87190061 + AluJo SINE Alu 1 294 -18 530 135 0 0 chr11 63593717 63593806 -87189747 - AluSg/x SINE Alu -14 298 210 218 186 23 0 chr11 63593816 63593859 -87189694 + L2 LINE L2 3270 3313 0 2469 85 0 3 chr11 63594634 63594940 -87188613 + AluSq SINE Alu 1 305 -8 1853 176 0 3 chr11 63595044 63595346 -87188207 + AluJo SINE Alu 1 301 -11 2058 124 3 16 chr11 63595476 63595790 -87187763 - AluSg SINE Alu 0 310 1 305 312 66 14 chr11 63595910 63596240 -87187313 - L1M4 LINE L1 -1592 4554 4208 2272 116 3 3 chr11 63596250 63596561 -87186992 - AluSx SINE Alu -1 311 1 779 130 0 32 chr11 63596622 63596745 -87186808 - FLAM_A SINE Alu -10 123 5 1599 173 28 14 chr11 63596947 63597231 -87186322 - AluJo SINE Alu -13 299 12 311 379 53 21 chr11 63597252 63597495 -87186058 - L1M4 LINE L1 -2801 3345 3095 442 236 135 34 chr11 63598046 63598224 -87185329 + MIR SINE MIR 67 262 0 318 262 48 0 chr11 63598801 63598885 -87184668 + L2 LINE L2 3148 3235 -37 1915 142 7 20 chr11 63599470 63599765 -87183788 - AluJb SINE Alu -12 300 10 786 205 87 0 chr11 63600583 63600744 -87182809 - FAM SINE Alu 0 175 1 2415 84 3 3 chr11 63600927 63601226 -87182327 + AluSp SINE Alu 1 299 -14 943 108 0 81 chr11 63601273 63601421 -87182132 + FRAM SINE Alu 20 155 -21 205 238 0 48 chr11 63601596 63601659 -87181894 + GA-rich Low_complexity Low_complexity 3 62 0 326 301 150 8 chr11 63602244 63602377 -87181176 + MIR3 SINE MIR 30 181 -27 737 157 0 0 chr11 63602377 63602498 -87181055 - FLAM_A SINE Alu 0 142 22 2284 114 3 0 chr11 63604252 63604560 -87178993 + AluSg SINE Alu 2 310 0 2237 99 30 3 chr11 63606314 63606616 -87176937 - AluSx SINE Alu -2 310 1 503 194 30 60 chr11 63606994 63607128 -87176425 + FLAM_A SINE Alu 2 131 -2 323 177 65 0 chr11 63609504 63609566 -87173987 - MIR SINE MIR -55 153 88 287 252 126 17 chr11 63609749 63609868 -87173685 + MIR SINE MIR 13 144 -118 379 233 100 8 chr11 63610851 63610971 -87172582 + MIR SINE MIR 45 175 -87 496 167 216 83 chr11 63611299 63611426 -87172127 + MIR SINE MIR 20 129 -133 2475 89 3 9 chr11 63611426 63611741 -87171812 - AluSp SINE Alu 0 313 1 496 167 216 83 chr11 63611741 63611817 -87171736 + MIR SINE MIR 129 250 -12 354 272 44 0 chr11 63612215 63612329 -87171224 - MIR3 SINE MIR -49 159 41 1881 179 3 3 chr11 63612786 63613088 -87170465 - AluJb SINE Alu -7 305 4 371 291 61 18 chr11 63613870 63614035 -87169518 + MIR3 SINE MIR 37 208 0 867 238 119 47 chr11 63614266 63614586 -87168967 - L2 LINE L2 0 3313 2971 527 311 53 58 chr11 63615146 63615615 -87167938 + L2 LINE L2 2351 2821 -451 2180 104 0 3 chr11 63615615 63615636 -87167917 - AluSx SINE Alu -5 307 287 231 0 33 0 chr11 63615636 63615666 -87167887 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2180 104 0 3 chr11 63615666 63615952 -87167601 - AluSx SINE Alu -25 287 1 527 311 53 58 chr11 63615952 63615976 -87167577 + L2 LINE L2 2821 2844 -428 2890 3 0 0 chr11 63615976 63616294 -87167259 - AluYb8 SINE Alu 0 318 1 527 311 53 58 chr11 63616294 63616493 -87167060 + L2 LINE L2 2844 3058 -214 201 74 0 0 chr11 63616691 63616718 -87166835 + (TGGA)n Simple_repeat Simple_repeat 1 27 0 355 183 28 0 chr11 63616784 63616855 -87166698 + MIR SINE MIR 70 142 -66 201 385 0 13 chr11 63617895 63617973 -87165580 + L2 LINE L2 3119 3195 -77 657 259 94 27 chr11 63618546 63618770 -87164783 + MIR SINE MIR 12 250 -12 2036 130 3 7 chr11 63619995 63620303 -87163250 - AluSx SINE Alu -5 307 1 526 248 63 29 chr11 63620463 63620669 -87162884 - L2 LINE L2 -2 3311 3099 512 263 91 0 chr11 63621610 63621801 -87161752 + MIR SINE MIR 43 253 -9 1340 205 28 7 chr11 63622893 63623176 -87160377 + AluJb SINE Alu 1 289 -13 495 313 94 48 chr11 63624435 63624904 -87158649 + L2 LINE L2 2351 2867 -405 2211 101 0 3 chr11 63624904 63625241 -87158312 - AluSx SINE Alu 0 312 1 495 313 94 48 chr11 63625241 63625443 -87158110 + L2 LINE L2 2867 3058 -214 201 74 0 0 chr11 63625641 63625668 -87157885 + (TGGA)n Simple_repeat Simple_repeat 1 27 0 355 183 28 0 chr11 63625734 63625805 -87157748 + MIR SINE MIR 70 142 -66 201 385 0 13 chr11 63626846 63626924 -87156629 + L2 LINE L2 3119 3195 -77 657 259 94 27 chr11 63627497 63627721 -87155832 + MIR SINE MIR 12 250 -12 2037 128 3 7 chr11 63628946 63629252 -87154301 - AluSx SINE Alu -7 305 1 609 250 48 24 chr11 63629412 63629620 -87153933 - L2 LINE L2 -2 3311 3099 504 265 83 0 chr11 63630563 63630754 -87152799 + MIR SINE MIR 43 253 -9 1898 142 14 3 chr11 63631848 63632143 -87151410 + AluJb SINE Alu 1 298 -14 301 320 137 18 chr11 63632265 63632484 -87151069 + MIR SINE MIR 13 257 -5 300 287 93 9 chr11 63632745 63632853 -87150700 + MIR SINE MIR 56 172 -90 891 189 37 12 chr11 63633070 63633390 -87150163 + MLT1A1 LTR MaLR 1 365 0 258 254 28 39 chr11 63634679 63634860 -87148693 + (CAGG)n Simple_repeat Simple_repeat 2 180 0 460 87 0 0 chr11 63635870 63635939 -87147614 - Alu SINE Alu -3 306 238 1544 53 11 0 chr11 63636039 63636229 -87147324 - AluY SINE Alu -119 192 1 1531 193 11 4 chr11 63636274 63636554 -87146999 + AluJo SINE Alu 1 282 -30 482 149 234 0 chr11 63636576 63636670 -87146883 - FLAM_A SINE Alu -17 116 1 463 232 51 29 chr11 63636670 63636808 -87146745 - MIR SINE MIR -108 154 14 561 228 8 16 chr11 63636835 63636962 -87146591 + MIR SINE MIR 12 137 -125 2157 109 0 3 chr11 63637020 63637322 -87146231 + AluSg SINE Alu 1 301 -9 245 272 130 11 chr11 63637336 63637428 -87146125 + MIR SINE MIR 146 248 -14 772 201 0 14 chr11 63638848 63638987 -87144566 + FRAM SINE Alu 1 137 -39 1202 163 136 26 chr11 63639024 63639288 -87144265 + AluJo SINE Alu 1 293 -19 1102 222 39 19 chr11 63641158 63641469 -87142084 - L1MA6 LINE L1 -1 6299 5983 737 148 7 148 chr11 63641505 63641632 -87141921 - L1M4c LINE L1 -3102 3280 3137 2201 100 7 0 chr11 63641632 63641941 -87141612 - AluSq SINE Alu -2 311 1 737 148 7 148 chr11 63641941 63641956 -87141597 - L1M4c LINE L1 -3245 3137 3122 848 142 0 15 chr11 63641956 63642090 -87141463 - FLAM_C SINE Alu 0 133 2 737 148 7 148 chr11 63642090 63642223 -87141330 - L1M4c LINE L1 -3260 3122 3043 304 162 51 103 chr11 63642224 63642307 -87141246 - L1M4c LINE L1 -3900 2484 2398 180 0 0 0 chr11 63642307 63642327 -87141226 + (TTATG)n Simple_repeat Simple_repeat 2 21 0 2212 68 21 0 chr11 63642327 63642608 -87140945 - AluY SINE Alu -24 287 1 304 162 51 103 chr11 63642608 63642640 -87140913 - L1M4c LINE L1 -3984 2400 2374 1239 178 54 4 chr11 63642642 63642883 -87140670 + AluJb SINE Alu 45 297 -15 1270 181 107 52 chr11 63642893 63643219 -87140334 + MER2 DNA MER2_type 1 344 0 776 218 117 33 chr11 63643221 63643615 -87139938 - L1M4c LINE L1 -4025 2359 1933 2321 84 0 3 chr11 63643645 63643954 -87139599 - AluSc SINE Alu -1 308 1 257 300 23 39 chr11 63644195 63644325 -87139228 + MER5A DNA MER1_type 12 139 -50 * 423 261 17 9 chr11 63644212 63644327 -87139226 - MER5A DNA MER1_type -14 175 60 1031 152 103 0 chr11 63644335 63644519 -87139034 - MLT1B LTR MaLR 0 390 188 662 231 0 15 chr11 63644534 63644668 -87138885 - FLAM_A SINE Alu -1 132 1 1523 228 68 88 chr11 63644670 63644804 -87138749 - L1M4c LINE L1 -4523 1790 1655 1952 128 14 0 chr11 63644804 63645093 -87138460 - AluSx SINE Alu -19 293 1 1523 228 68 88 chr11 63645093 63645330 -87138223 - L1M4c LINE L1 -4658 1655 1415 2242 73 6 19 chr11 63645330 63645645 -87137908 - AluY SINE Alu 0 311 1 1523 228 68 88 chr11 63645645 63645666 -87137887 - L1M4c LINE L1 -4898 1415 1395 976 100 0 8 chr11 63645666 63645796 -87137757 - FLAM_C SINE Alu -4 129 1 1523 228 68 88 chr11 63645796 63646208 -87137345 - L1M4c LINE L1 -4918 1395 807 335 314 0 11 chr11 63646348 63646441 -87137112 - L1M3de LINE L1 -5226 665 310 2325 75 3 0 chr11 63646455 63646750 -87136803 + AluSp SINE Alu 1 296 -17 1197 291 98 59 chr11 63646860 63647472 -87136081 - L1M3d LINE L1 -5253 638 3 354 314 32 0 chr11 63647678 63647803 -87135750 + MIR SINE MIR 28 157 -62 1635 149 19 58 chr11 63647806 63648115 -87135438 - AluJb SINE Alu -15 297 1 342 149 0 0 chr11 63648483 63648537 -87135016 - MER57A LTR ERV1 -60 368 295 2186 114 3 0 chr11 63648806 63649112 -87134441 - AluSp SINE Alu -6 307 1 235 193 88 61 chr11 63649189 63649303 -87134250 - LTR67 LTR ERVL -2 555 439 1839 157 7 0 chr11 63649376 63649669 -87133884 + AluSq SINE Alu 1 295 -18 1238 257 159 16 chr11 63649712 63650159 -87133394 - MLT1J LTR MaLR 0 511 1 260 217 17 0 chr11 63650276 63650336 -87133217 + MER58 DNA MER1_type 2352 2412 -8 1322 189 21 18 chr11 63650339 63650625 -87132928 - L1ME1 LINE L1 -292 6669 6383 1735 120 40 60 chr11 63650628 63650927 -87132626 + AluSx SINE Alu 1 293 -19 2073 106 0 10 chr11 63650930 63651232 -87132321 + AluY SINE Alu 1 299 -12 1056 179 61 24 chr11 63651311 63651533 -87132020 - MER58B DNA MER1_type -2110 310 77 1388 149 82 11 chr11 63651533 63651802 -87131751 + AluJo SINE Alu 1 288 -24 1056 179 61 24 chr11 63651802 63651825 -87131728 - MER58B DNA MER1_type -2343 77 56 2078 98 35 0 chr11 63651866 63652153 -87131400 + AluSg SINE Alu 3 299 -11 379 191 79 22 chr11 63652199 63652288 -87131265 + L1ME1 LINE L1 5907 6000 -166 728 225 16 27 chr11 63652292 63652479 -87131074 - L1ME1 LINE L1 -652 6309 6125 2009 121 0 30 chr11 63652500 63652805 -87130748 - AluJb SINE Alu -16 296 1 1304 244 47 80 chr11 63652815 63653367 -87130186 - L1ME1 LINE L1 -4682 2259 1706 1810 157 10 7 chr11 63653367 63653667 -87129886 - AluSx SINE Alu -11 301 1 1304 244 47 80 chr11 63653667 63654217 -87129336 - L1ME1 LINE L1 -5235 1706 1140 1006 130 0 19 chr11 63654247 63654391 -87129162 - AluSg/x SINE Alu -35 275 133 2378 58 3 0 chr11 63654391 63654685 -87128868 - AluY SINE Alu -16 295 1 1006 130 0 19 chr11 63654685 63654701 -87128852 - AluSg/x SINE Alu -177 133 118 246 133 0 22 chr11 63654707 63654752 -87128801 - L1ME1 LINE L1 -6100 323 280 1450 205 0 0 chr11 63654752 63655025 -87128528 + 7SLRNA srpRNA srpRNA 11 283 -37 2134 82 3 30 chr11 63655065 63655369 -87128184 + AluY SINE Alu 1 296 -15 871 236 21 21 chr11 63655372 63655651 -87127902 - L1ME1 LINE L1 -6139 673 24 404 222 24 40 chr11 63655963 63656089 -87127464 + LTR67 LTR ERVL 432 555 -2 758 206 59 0 chr11 63656208 63656378 -87127175 - MER58A DNA MER1_type 0 224 45 414 302 78 5 chr11 63657882 63658074 -87125479 - MIR SINE MIR -55 207 2 432 268 179 0 chr11 63658267 63658435 -87125118 + MIR SINE MIR 53 250 -12 1498 144 23 4 chr11 63660174 63660437 -87123116 - AluSx SINE Alu -11 301 34 589 348 22 4 chr11 63660693 63660923 -87122630 + MIR SINE MIR 3 236 -26 729 237 89 25 chr11 63660934 63661170 -87122383 - MIR SINE MIR -10 252 2 2180 98 7 10 chr11 63661905 63662211 -87121342 + AluSq SINE Alu 1 305 -8 1527 138 65 52 chr11 63662657 63662823 -87120730 - AluJo SINE Alu -17 295 122 2145 72 24 7 chr11 63662823 63663114 -87120439 + AluSg SINE Alu 1 296 -14 1527 138 65 52 chr11 63663114 63663238 -87120315 - AluJo SINE Alu -190 122 1 794 232 243 18 chr11 63663375 63663647 -87119906 + MLT1H LTR MaLR 215 547 -2 1952 100 25 14 chr11 63663760 63664072 -87119481 - AluSx SINE Alu 0 315 1 450 342 27 11 chr11 63664185 63664369 -87119184 - MIR SINE MIR -10 252 66 2221 98 0 3 chr11 63665597 63665894 -87117659 + AluSx SINE Alu 1 296 -16 347 313 9 9 chr11 63665896 63666008 -87117545 + MLT1J2 LTR MaLR 78 189 -261 360 358 77 9 chr11 63666362 63666583 -87116970 + L2 LINE L2 1267 1502 -1812 2395 84 7 0 chr11 63666702 63667012 -87116541 - AluSx SINE Alu 0 312 1 937 343 143 6 chr11 63667022 63667836 -87115717 + L2 LINE L2 1750 2674 -640 2103 115 84 3 chr11 63667862 63668080 -87115473 - Tigger2a DNA MER2_type -2274 444 184 1164 150 177 41 chr11 63668080 63668346 -87115207 + AluJo SINE Alu 1 302 0 2103 115 84 3 chr11 63668346 63668483 -87115070 - Tigger2a DNA MER2_type -2534 184 60 366 175 0 0 chr11 63668497 63668554 -87114999 + AluJ/FLAM SINE Alu 2 58 -244 322 136 23 148 chr11 63668554 63668592 -87114961 - Tigger2a DNA MER2_type -2627 81 40 1625 164 3 57 chr11 63668592 63668743 -87114810 + AluJo SINE Alu 1 159 -153 2186 92 3 13 chr11 63668743 63669046 -87114507 + AluSq SINE Alu 1 300 -13 2349 61 7 16 chr11 63669046 63669356 -87114197 + AluY SINE Alu 1 307 -4 1625 164 3 57 chr11 63669356 63669521 -87114032 + AluJo SINE Alu 157 301 -11 322 136 23 148 chr11 63669521 63669570 -87113983 - Tigger2a DNA MER2_type -2668 40 5 202 354 30 0 chr11 63669576 63669675 -87113878 + L2 LINE L2 2698 2799 -515 1045 146 151 29 chr11 63669677 63669883 -87113670 - AluJb SINE Alu -81 231 1 1944 113 7 3 chr11 63669895 63670221 -87113332 - AluSx SINE Alu 0 327 1 2428 73 0 0 chr11 63670225 63670526 -87113027 - AluY SINE Alu -10 301 1 429 254 31 23 chr11 63670570 63670700 -87112853 + L2 LINE L2 3179 3309 -4 1958 122 10 14 chr11 63670701 63670995 -87112558 + AluSx SINE Alu 13 305 -7 302 280 67 0 chr11 63671737 63671812 -87111741 - MIR SINE MIR -163 99 20 458 256 43 47 chr11 63671831 63672042 -87111511 + MER113 DNA MER1_type? 8 217 -304 1669 131 43 32 chr11 63672166 63672448 -87111105 - AluJb SINE Alu -27 285 1 1304 244 47 80 chr11 63672458 63673010 -87110543 - L1MCa LINE L1 -4682 2259 1706 1828 153 10 7 chr11 63673010 63673310 -87110243 - AluSx SINE Alu -11 301 1 1304 244 47 80 chr11 63673310 63673860 -87109693 - L1MCa LINE L1 -5235 1706 1140 1006 130 0 19 chr11 63673890 63674034 -87109519 - AluSg/x SINE Alu -35 275 133 2378 58 3 0 chr11 63674034 63674328 -87109225 - AluY SINE Alu -16 295 1 1006 130 0 19 chr11 63674328 63674344 -87109209 - AluSg/x SINE Alu -177 133 118 246 133 0 22 chr11 63674350 63674395 -87109158 - L1MCa LINE L1 -6100 323 280 1450 205 0 0 chr11 63674395 63674668 -87108885 + 7SLRNA srpRNA srpRNA 11 283 -37 2099 82 3 33 chr11 63674708 63675013 -87108540 + AluY SINE Alu 1 296 -15 871 236 21 21 chr11 63675016 63675295 -87108258 - L1MCa LINE L1 -6139 673 24 404 222 24 40 chr11 63675606 63675732 -87107821 + LTR67 LTR ERVL 432 555 -2 758 206 59 0 chr11 63675851 63676021 -87107532 - MER58A DNA MER1_type 0 224 45 610 225 55 39 chr11 63677910 63678092 -87105461 - LTR41 LTR ERVL -586 187 3 268 284 32 11 chr11 63678418 63678513 -87105040 - ERVL LTR ERVL -330 5434 5338 643 210 66 39 chr11 63678561 63678742 -87104811 - LTR41 LTR ERVL -587 186 1 503 118 0 49 chr11 63678743 63678776 -87104777 + L1M4 LINE L1 2838 2871 -3275 1311 161 126 0 chr11 63678776 63679030 -87104523 + AluSx SINE Alu 1 286 -26 407 73 15 0 chr11 63679032 63679100 -87104453 + (TATAA)n Simple_repeat Simple_repeat 4 72 0 503 118 0 49 chr11 63679100 63679165 -87104388 + L1M4 LINE L1 2872 2934 -3212 1954 143 0 19 chr11 63679168 63679518 -87104035 + AluSx SINE Alu 1 312 0 366 182 57 45 chr11 63679520 63679608 -87103945 + L1M4 LINE L1 3136 3224 -2922 2234 88 0 0 chr11 63679608 63679921 -87103632 + AluSg SINE Alu 1 313 0 2012 138 0 19 chr11 63679925 63680061 -87103492 + AluJb SINE Alu 3 140 -172 1873 94 20 17 chr11 63680061 63680360 -87103193 + AluY SINE Alu 1 300 -11 2012 138 0 19 chr11 63680360 63680534 -87103019 + AluJb SINE Alu 140 307 -5 361 325 17 17 chr11 63680675 63680792 -87102761 - L2 LINE L2 -2 3270 3154 1607 183 10 3 chr11 63680818 63681107 -87102446 + AluJb SINE Alu 1 291 -21 23 0 0 0 chr11 63681107 63681130 -87102423 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr11 63681256 63681285 -87102268 + (CA)n Simple_repeat Simple_repeat 2 30 0 189 317 0 17 chr11 63681318 63681378 -87102175 - MIR SINE MIR -202 60 2 1596 92 229 0 chr11 63681446 63681686 -87101867 - AluSx SINE Alu -7 295 1 282 330 0 0 chr11 63681688 63681785 -87101768 - MIR SINE MIR -112 150 54 485 286 60 40 chr11 63681946 63682121 -87101432 + MLT1I LTR MaLR 30 208 -201 1027 223 83 33 chr11 63682121 63682422 -87101131 + MLT1A2 LTR MaLR 1 316 -58 895 121 67 47 chr11 63682423 63682519 -87101034 + AluJo SINE Alu 2 104 -208 2499 106 28 14 chr11 63682519 63682878 -87100675 - THE1B LTR MaLR 0 364 1 895 121 67 47 chr11 63682878 63682930 -87100623 + AluJo SINE Alu 104 153 -159 1008 185 144 0 chr11 63682937 63683159 -87100394 + AluJo SINE Alu 39 292 -20 622 297 95 5 chr11 63683245 63683467 -87100086 + MIR SINE MIR 5 246 -16 2153 96 0 26 chr11 63683697 63684000 -87099553 - AluSx SINE Alu -17 295 1 2032 120 0 10 chr11 63684303 63684603 -87098950 - AluSx SINE Alu -15 297 1 1692 165 3 29 chr11 63684608 63684917 -87098636 - AluJb SINE Alu -11 301 1 2291 73 0 3 chr11 63684923 63685225 -87098328 - AluY SINE Alu -9 302 2 31 0 0 0 chr11 63685228 63685259 -87098294 + AT_rich Low_complexity Low_complexity 1 31 0 1965 118 3 23 chr11 63685303 63685609 -87097944 - AluSg SINE Alu -10 300 1 2162 109 6 10 chr11 63685679 63685992 -87097561 + AluSx SINE Alu 1 312 0 1534 182 7 0 chr11 63686005 63686274 -87097279 + AluJo SINE Alu 9 279 -33 256 91 73 0 chr11 63686278 63686333 -87097220 + (CAGGG)n Simple_repeat Simple_repeat 2 60 0 32 67 0 0 chr11 63686469 63686529 -87097024 + GC_rich Low_complexity Low_complexity 1 60 0 585 213 85 111 chr11 63687408 63687643 -87095910 - MIR SINE MIR -32 230 2 239 338 91 19 chr11 63687701 63687855 -87095698 - MIR SINE MIR -74 188 24 2054 96 3 18 chr11 63688134 63688460 -87095093 - AluSq SINE Alu 0 327 6 907 226 113 4 chr11 63688483 63688722 -87094831 - L1ME2 LINE L1 -6 6158 5894 181 176 0 0 chr11 63690140 63690174 -87093379 - MIR3 SINE MIR -9 199 166 453 217 185 38 chr11 63690418 63690602 -87092951 - L2 LINE L2 -4 3309 3099 793 191 23 0 chr11 63690613 63690744 -87092809 + AluSq/x SINE Alu 2 135 -178 27 0 0 0 chr11 63690744 63690771 -87092782 + AT_rich Low_complexity Low_complexity 1 27 0 2174 100 7 0 chr11 63690837 63691136 -87092417 + AluSx SINE Alu 1 301 -11 573 269 152 21 chr11 63691197 63691480 -87092073 - L2 LINE L2 -347 2967 2648 254 224 0 26 chr11 63691481 63691557 -87091996 + (CGTG)n Simple_repeat Simple_repeat 2 75 0 421 180 14 213 chr11 63691655 63691866 -87091687 - MIR SINE MIR -73 189 21 354 242 81 47 chr11 63692744 63692893 -87090660 + MLT1J2 LTR MaLR 1 154 -296 268 173 0 19 chr11 63692938 63692990 -87090563 + MLT1J2 LTR MaLR 280 330 -120 356 273 23 23 chr11 63692996 63693109 -87090444 + L2 LINE L2 2914 3026 -246 2288 135 36 75 chr11 63693109 63693163 -87090390 + MSTB LTR MaLR 1 56 -370 2273 88 0 13 chr11 63693163 63693469 -87090084 + AluSq SINE Alu 1 302 -11 2288 135 36 75 chr11 63693469 63693785 -87089768 + MSTB LTR MaLR 56 354 -72 2103 127 7 0 chr11 63693785 63694092 -87089461 - AluSq SINE Alu 0 313 5 2288 135 36 75 chr11 63694092 63694163 -87089390 + MSTB LTR MaLR 354 426 0 356 273 23 23 chr11 63694163 63694177 -87089376 + L2 LINE L2 3025 3041 -231 2409 80 0 0 chr11 63694341 63694642 -87088911 + AluSg SINE Alu 1 301 -9 876 231 25 37 chr11 63694655 63694898 -87088655 - MER96B DNA MER1_type? -177 240 1 1921 115 49 0 chr11 63695687 63695973 -87087580 - AluSx SINE Alu -12 300 1 898 262 144 55 chr11 63696271 63696649 -87086904 + LTR67 LTR ERVL 4 440 -117 2324 70 3 13 chr11 63696649 63696965 -87086588 - AluSp SINE Alu 0 313 1 898 262 144 55 chr11 63696965 63697093 -87086460 + LTR67 LTR ERVL 440 555 -2 360 207 0 0 chr11 63697505 63697621 -87085932 + (CA)n Simple_repeat Simple_repeat 1 116 0 573 234 3 3 chr11 63697639 63698290 -87085263 + (CA)n Simple_repeat Simple_repeat 1 651 0 514 278 6 0 chr11 63698305 63698481 -87085072 + (CA)n Simple_repeat Simple_repeat 2 178 0 1725 172 7 0 chr11 63699733 63700030 -87083523 - AluJb SINE Alu -13 299 1 2150 77 4 0 chr11 63700144 63700418 -87083135 - AluSg SINE Alu -35 275 1 206 209 30 30 chr11 63700419 63700486 -87083067 + MIR SINE MIR 81 147 -61 257 326 8 47 chr11 63700576 63700705 -87082848 - MIR SINE MIR -137 125 2 270 0 0 0 chr11 63701334 63701364 -87082189 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 424 246 9 18 chr11 63701369 63701479 -87082074 - L2 LINE L2 -19 3253 3145 390 21 0 0 chr11 63701768 63701815 -87081738 + (TG)n Simple_repeat Simple_repeat 1 47 0 1513 207 0 3 chr11 63701856 63702141 -87081412 + AluJb SINE Alu 7 290 -22 901 139 42 0 chr11 63702154 63702298 -87081255 - MSTA LTR MaLR -36 390 241 1190 116 0 6 chr11 63702298 63702471 -87081082 - AluSg/x SINE Alu -15 297 126 2413 74 0 7 chr11 63702472 63702781 -87080772 - AluSx SINE Alu -5 307 1 1093 144 149 9 chr11 63702781 63703003 -87080550 - MSTA LTR MaLR -175 253 1 322 326 0 11 chr11 63703018 63703199 -87080354 + (TG)n Simple_repeat Simple_repeat 2 180 0 267 31 0 0 chr11 63703226 63703258 -87080295 + (TG)n Simple_repeat Simple_repeat 2 33 0 193 354 31 0 chr11 63703711 63703781 -87079772 + MIR SINE MIR 81 153 -109 467 278 62 12 chr11 63703781 63703943 -87079610 + MER91A DNA MER1_type 1 170 -26 200 132 0 26 chr11 63705885 63705923 -87077630 + (CATTT)n Simple_repeat Simple_repeat 3 39 0 297 303 106 60 chr11 63706347 63706631 -87076922 + L2 LINE L2 2976 3272 0 2067 62 0 0 chr11 63706805 63707063 -87076490 + AluY SINE Alu 49 306 -5 1933 142 0 7 chr11 63707076 63707372 -87076181 + AluSx SINE Alu 4 297 -15 913 230 63 24 chr11 63707712 63707964 -87075589 + MIR SINE MIR 1 262 0 324 315 0 0 chr11 63708118 63708210 -87075343 + L2 LINE L2 3222 3313 0 1614 177 17 20 chr11 63708596 63708896 -87074657 + AluJo SINE Alu 1 299 -13 2131 133 3 0 chr11 63708896 63709204 -87074349 + AluSx SINE Alu 1 310 -2 756 255 96 21 chr11 63709410 63709836 -87073717 + LTR16C LTR ERVL 3 485 -6 353 219 149 18 chr11 63711015 63711129 -87072424 + MIR3 SINE MIR 31 159 -49 377 268 258 23 chr11 63712526 63712928 -87070625 + L2 LINE L2 2617 2923 -390 1735 139 7 30 chr11 63712928 63713223 -87070330 - AluSx SINE Alu -24 288 1 1805 122 57 11 chr11 63713223 63713501 -87070052 - AluSg SINE Alu -18 292 1 377 268 258 23 chr11 63713501 63713523 -87070030 + L2 LINE L2 2922 3125 -188 2393 80 0 3 chr11 63713711 63714022 -87069531 + AluSg SINE Alu 1 310 0 424 313 0 36 chr11 63714054 63714220 -87069333 + G-rich Low_complexity Low_complexity 2 161 0 266 318 119 0 chr11 63715609 63715735 -87067818 - MIR SINE MIR -106 156 16 365 275 72 36 chr11 63716306 63716473 -87067080 - MIR SINE MIR -55 207 35 315 294 28 9 chr11 63716493 63716602 -87066951 - MIR SINE MIR -6 256 146 253 326 128 0 chr11 63716648 63716789 -87066764 + MIR SINE MIR 84 242 -20 1557 193 0 39 chr11 63716787 63717094 -87066459 - AluJo SINE Alu -18 294 2 1628 235 33 21 chr11 63717283 63717593 -87065960 + MER63B DNA MER1_type 10 330 -732 2311 85 3 0 chr11 63717593 63717920 -87065633 - AluSx SINE Alu 0 328 1 1628 235 33 21 chr11 63717920 63718029 -87065524 + MER63B DNA MER1_type 330 436 0 566 235 197 2 chr11 63718417 63718621 -87064932 + MIR SINE MIR 1 240 -22 188 390 51 8 chr11 63718651 63718769 -87064784 - L2 LINE L2 -25 3247 3125 221 268 187 16 chr11 63718784 63718907 -87064646 + MIR SINE MIR 46 189 -73 197 306 111 14 chr11 63719564 63719636 -87063917 + MIR3 SINE MIR 81 159 -49 295 298 220 21 chr11 63719697 63719888 -87063665 - MIR SINE MIR -12 250 22 2294 104 0 3 chr11 63720053 63720352 -87063201 + AluSx SINE Alu 1 298 -14 439 304 24 12 chr11 63720670 63720838 -87062715 + L3 LINE CR1 1306 1475 -102 947 276 16 4 chr11 63720838 63721092 -87062461 - MIR SINE MIR 0 262 6 798 139 0 0 chr11 63721221 63721343 -87062210 - FLAM_C SINE Alu -11 122 1 220 311 85 9 chr11 63721659 63721765 -87061788 + MIR3 SINE MIR 45 158 -50 541 296 48 10 chr11 63723011 63723217 -87060336 + MIR SINE MIR 48 261 -1 267 205 157 12 chr11 63723218 63723301 -87060252 + MLT1J2 LTR MaLR 66 160 -290 458 272 37 25 chr11 63723360 63723522 -87060031 + MLT1J2 LTR MaLR 265 428 -22 1310 229 14 132 chr11 63723579 63723687 -87059866 - MLT2B1 LTR ERVL 0 520 401 1933 132 14 31 chr11 63723687 63723975 -87059578 + AluJb SINE Alu 19 301 -11 1310 229 14 132 chr11 63723975 63724456 -87059097 - MLT2B1 LTR ERVL -119 401 1 1056 134 12 0 chr11 63724562 63724726 -87058827 - FRAM SINE Alu 0 166 1 2246 120 0 3 chr11 63725085 63725384 -87058169 - AluSx SINE Alu -13 299 2 2400 92 3 19 chr11 63725400 63725717 -87057836 - AluSx SINE Alu 0 312 1 561 277 102 63 chr11 63725936 63726326 -87057227 + MLT1I LTR MaLR 1 409 0 838 121 0 89 chr11 63726421 63726578 -87056975 + FLAM_C SINE Alu 1 143 0 2367 88 0 10 chr11 63726584 63726889 -87056664 + AluY SINE Alu 3 304 -7 915 216 49 15 chr11 63726890 63727094 -87056459 + MER58A DNA MER1_type 14 224 0 319 286 160 29 chr11 63728668 63728843 -87054710 - MIR SINE MIR -51 211 14 2274 95 7 16 chr11 63728908 63729212 -87054341 + AluSq SINE Alu 2 302 -11 2200 75 3 34 chr11 63729212 63729504 -87054049 + AluSc SINE Alu 1 283 -26 2362 101 0 0 chr11 63729714 63730022 -87053531 + AluSx SINE Alu 1 308 -4 2020 141 0 0 chr11 63730517 63730801 -87052752 + AluSx SINE Alu 7 290 -22 1486 138 22 0 chr11 63730803 63731034 -87052519 + AluJb SINE Alu 70 305 -7 953 164 55 41 chr11 63731147 63731367 -87052186 - MER58B DNA MER1_type -5 336 114 2621 61 3 0 chr11 63731468 63731779 -87051774 + AluSx SINE Alu 1 312 0 266 270 104 78 chr11 63731929 63732044 -87051509 - MIR SINE MIR -61 147 30 222 318 93 9 chr11 63732381 63732488 -87051065 - MIR SINE MIR -63 145 30 331 253 175 7 chr11 63733502 63733656 -87049897 + MIR SINE MIR 12 191 -71 2409 54 0 4 chr11 63733725 63734005 -87049548 + AluSc SINE Alu 1 279 -30 268 207 99 72 chr11 63734088 63734199 -87049354 + MIR SINE MIR 103 216 -46 920 229 59 24 chr11 63734490 63734743 -87048810 + MIR SINE MIR 1 262 0 365 283 0 0 chr11 63734897 63734989 -87048564 + L2 LINE L2 3222 3313 0 1732 177 17 20 chr11 63735376 63735676 -87047877 + AluJo SINE Alu 1 299 -13 1976 97 3 74 chr11 63735778 63736076 -87047477 - AluSx SINE Alu -23 289 13 1015 178 19 0 chr11 63736087 63736244 -87047309 + AluJb SINE Alu 132 291 -21 525 177 21 0 chr11 63736751 63736847 -87046706 - AluJo SINE Alu -176 136 39 486 171 0 0 chr11 63736840 63736916 -87046637 - AluJ/FLAM SINE Alu -235 77 2 * 2379 97 3 0 chr11 63736963 63737271 -87046282 - AluSc SINE Alu 0 309 1 2319 58 10 10 chr11 63738708 63739032 -87044521 - AluY SINE Alu 0 311 1 617 305 125 53 chr11 63740039 63740465 -87043088 - MLT1H LTR MaLR -1 548 77 3137 149 50 26 chr11 63740465 63741068 -87042485 - LTR35 LTR ERV1 -1 617 1 617 305 125 53 chr11 63741068 63741152 -87042401 - MLT1H LTR MaLR -472 77 1 368 252 112 56 chr11 63741198 63741341 -87042212 - MER58B DNA MER1_type -3 338 188 311 245 66 57 chr11 63741333 63741439 -87042114 - MLT1H LTR MaLR -128 421 315 * 828 169 11 190 chr11 63741446 63741542 -87042011 + LTR34 LTR ERV1 15 126 -573 2246 114 0 0 chr11 63741542 63741839 -87041714 - AluSc SINE Alu -12 297 1 828 169 11 190 chr11 63741839 63742090 -87041463 + LTR34 LTR ERV1 126 300 -399 1756 129 17 106 chr11 63742094 63742401 -87041152 - MER4D LTR ERV1 0 903 641 2324 110 0 3 chr11 63742401 63742701 -87040852 + AluSg SINE Alu 1 299 -11 1756 129 17 106 chr11 63742701 63742810 -87040743 - MER4D LTR ERV1 -262 641 524 1147 143 0 0 chr11 63742811 63742972 -87040581 - AluSg/x SINE Alu -15 295 135 379 189 31 39 chr11 63742980 63743007 -87040546 + MER4-int LTR ERV1 2147 2173 -3600 2198 106 3 13 chr11 63743007 63743309 -87040244 + AluY SINE Alu 1 299 -12 379 189 31 39 chr11 63743309 63743427 -87040126 + MER4-int LTR ERV1 2173 3320 -2453 5002 99 66 44 chr11 63743431 63744335 -87039218 + MER4-int LTR ERV1 3925 4808 -1790 2268 115 3 10 chr11 63744335 63744649 -87038904 - AluSq SINE Alu -1 312 1 2175 137 0 10 chr11 63744650 63744957 -87038596 - AluSx SINE Alu -8 304 1 5002 99 66 44 chr11 63744957 63745174 -87038379 + MER4-int LTR ERV1 4808 5019 -1579 2110 103 0 31 chr11 63745174 63745488 -87038065 + AluSc SINE Alu 1 305 0 5002 99 66 44 chr11 63745488 63745820 -87037733 + MER4-int LTR ERV1 5019 5469 -1129 237 146 0 0 chr11 63745825 63745880 -87037673 - AluSp/q SINE Alu 0 303 249 755 253 97 19 chr11 63746587 63747008 -87036545 + LTR16C LTR ERVL 3 481 -10 346 219 149 18 chr11 63748192 63748306 -87035247 + MIR3 SINE MIR 31 159 -49 349 257 276 13 chr11 63749721 63750075 -87033478 + L2 LINE L2 2639 3074 -239 1843 142 7 30 chr11 63750109 63750404 -87033149 - AluSx SINE Alu -24 288 1 1933 122 57 11 chr11 63750404 63750682 -87032871 - AluSg SINE Alu -18 292 1 2300 95 3 10 chr11 63750892 63751196 -87032357 + AluSg SINE Alu 1 302 -8 872 149 128 0 chr11 63751643 63751791 -87031762 - FRAM SINE Alu -17 159 1 2406 66 3 10 chr11 63751809 63752110 -87031443 + AluSg SINE Alu 1 299 -11 1281 135 0 0 chr11 63752110 63752288 -87031265 + AluSg/x SINE Alu 134 311 -1 25 0 0 0 chr11 63752404 63752429 -87031124 + AT_rich Low_complexity Low_complexity 1 25 0 2166 115 7 7 chr11 63752430 63752726 -87030827 - AluSx SINE Alu -16 296 1 2290 260 49 39 chr11 63752747 63753217 -87030336 + L1ME4a LINE L1 3325 3810 -2336 2548 183 29 70 chr11 63753217 63753545 -87030008 - MER68 LTR ERV1 0 562 267 1492 161 0 29 chr11 63753545 63753787 -87029766 - AluJb SINE Alu -77 235 1 2548 183 29 70 chr11 63753787 63754044 -87029509 - MER68 LTR ERV1 -295 267 1 2290 260 49 39 chr11 63754044 63754487 -87029066 + L1ME4a LINE L1 3810 4247 -1899 409 230 106 54 chr11 63754634 63754897 -87028656 + LTR40c LTR ERVL 119 408 -54 692 242 38 27 chr11 63754901 63755087 -87028466 - MER58A DNA MER1_type 0 224 37 2253 108 7 0 chr11 63755090 63755387 -87028166 - AluSq SINE Alu -12 301 3 291 301 66 54 chr11 63755485 63755651 -87027902 + LTR33 LTR ERVL 43 210 -311 232 150 25 0 chr11 63755817 63755857 -87027696 + Alu SINE Alu 1 41 -267 2284 112 0 0 chr11 63758128 63758424 -87025129 - AluSc SINE Alu -11 298 3 2317 102 0 3 chr11 63758429 63758724 -87024829 - AluSc SINE Alu -15 294 1 1910 155 3 19 chr11 63758727 63759036 -87024517 - AluJo SINE Alu -8 304 1 489 304 111 22 chr11 63759165 63759217 -87024336 + L1ME4a LINE L1 5272 5318 -2490 2279 80 39 0 chr11 63759217 63759503 -87024050 + AluSx SINE Alu 1 297 -15 489 304 111 22 chr11 63759503 63759954 -87023599 + L1ME4a LINE L1 5318 5820 -1988 2366 105 0 0 chr11 63759959 63760263 -87023290 + AluSc SINE Alu 2 305 -4 2273 101 13 3 chr11 63760270 63760568 -87022985 + AluSq SINE Alu 1 301 -12 616 156 18 0 chr11 63760597 63760706 -87022847 + FRAM SINE Alu 51 161 -15 515 261 82 65 chr11 63760730 63760929 -87022624 + L1ME4a LINE L1 5868 6073 -48 2451 71 0 3 chr11 63760929 63761226 -87022327 - AluY SINE Alu -15 296 1 515 261 82 65 chr11 63761226 63761271 -87022282 + L1ME4a LINE L1 6073 6116 -5 1823 161 13 13 chr11 63762950 63763118 -87020435 - AluJb SINE Alu -8 304 134 2324 84 10 13 chr11 63763118 63763416 -87020137 - AluSg SINE Alu -13 297 1 1823 161 13 13 chr11 63763416 63763551 -87020002 - AluJb SINE Alu -177 135 1 1813 179 7 3 chr11 63763597 63763888 -87019665 + AluJo SINE Alu 1 292 -20 232 296 129 38 chr11 63764537 63764669 -87018884 - MIR3 SINE MIR -11 197 54 256 271 108 10 chr11 63765323 63765441 -87018112 - MIR SINE MIR -72 136 7 204 328 113 23 chr11 63765853 63766030 -87017523 - MIR SINE MIR -4 258 66 22 0 0 0 chr11 63766429 63766451 -87017102 + AT_rich Low_complexity Low_complexity 1 22 0 1642 139 24 107 chr11 63770492 63770830 -87012723 - AluJb SINE Alu -2 310 1 1937 48 0 22 chr11 63771818 63772047 -87011506 - AluY SINE Alu -13 298 75 952 86 0 0 chr11 63772051 63772167 -87011386 - AluY SINE Alu -195 116 1 566 275 39 6 chr11 63772397 63772575 -87010978 + MLT1K LTR MaLR 284 467 -121 1200 128 169 41 chr11 63772654 63772897 -87010656 + AluJo SINE Alu 1 274 -38 226 0 0 56 chr11 63772912 63772948 -87010605 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2248 69 7 4 chr11 63772952 63773268 -87010285 + AluSg1 SINE Alu 1 317 0 674 107 20 140 chr11 63773426 63773455 -87010098 - FLAM_C SINE Alu -170 132 101 2007 132 14 0 chr11 63773455 63773742 -87009811 + AluSg SINE Alu 1 291 -19 674 107 20 140 chr11 63773742 63773862 -87009691 - FLAM_C SINE Alu -201 101 1 1811 140 59 0 chr11 63773874 63774146 -87009407 - AluJo SINE Alu -24 288 1 510 293 120 18 chr11 63774250 63774475 -87009078 - MIR SINE MIR 0 262 15 710 295 17 38 chr11 63775054 63775291 -87008262 - MIR SINE MIR -13 249 18 2505 71 7 3 chr11 63776043 63776351 -87007202 - AluY SINE Alu -2 309 1 385 149 14 14 chr11 63776472 63776546 -87007007 + MIR SINE MIR 185 258 -4 1141 199 133 19 chr11 63776726 63776982 -87006571 - AluSg SINE Alu -20 290 6 214 172 69 17 chr11 63777039 63777097 -87006456 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 2078 139 3 10 chr11 63777112 63777414 -87006139 + AluSx SINE Alu 1 300 -12 1953 141 30 23 chr11 63777911 63778210 -87005343 - AluSx SINE Alu -11 301 1 2293 109 0 3 chr11 63778717 63779020 -87004533 + AluSx SINE Alu 1 302 -10 2180 141 3 0 chr11 63782475 63782779 -87000774 - AluSx SINE Alu -7 305 1 2258 111 0 3 chr11 63782785 63783083 -87000470 - AluSg SINE Alu -13 297 1 577 206 141 35 chr11 63783360 63783530 -87000023 - MIR3 SINE MIR -5 203 16 22 0 0 0 chr11 63785797 63785819 -86997734 + AT_rich Low_complexity Low_complexity 1 22 0 2025 141 3 10 chr11 63786079 63786376 -86997177 - AluJb SINE Alu -16 296 2 180 0 0 0 chr11 63786476 63786496 -86997057 + (A)n Simple_repeat Simple_repeat 1 20 0 2417 103 0 0 chr11 63786534 63786836 -86996717 - AluSg SINE Alu -8 302 1 2361 108 0 0 chr11 63787821 63788118 -86995435 - AluSx SINE Alu -15 297 1 227 299 43 51 chr11 63789171 63789288 -86994265 + L2 LINE L2 3188 3303 -10 2463 87 0 6 chr11 63790111 63790422 -86993131 + AluSc SINE Alu 1 309 0 2378 92 7 0 chr11 63790776 63791080 -86992473 + AluSg SINE Alu 2 307 -3 1340 204 10 30 chr11 63791582 63791886 -86991667 - AluJo SINE Alu -14 298 1 215 176 0 39 chr11 63792797 63792848 -86990705 + (CCCCG)n Simple_repeat Simple_repeat 5 53 0 1962 128 14 14 chr11 63793305 63793594 -86989959 + AluSx SINE Alu 17 305 -7 319 280 67 0 chr11 63794336 63794411 -86989142 - MIR SINE MIR -163 99 20 447 256 43 47 chr11 63794430 63794641 -86988912 + MER113 DNA MER1_type? 8 217 -304 1495 147 163 0 chr11 63794759 63795010 -86988543 - AluJb SINE Alu -20 292 1 309 164 16 29 chr11 63795186 63795271 -86988282 - L1ME2 LINE L1 0 6166 6080 2269 95 3 7 chr11 63795298 63795593 -86987960 + AluSx SINE Alu 1 294 -18 2021 152 7 0 chr11 63795608 63795905 -86987648 - AluJo SINE Alu -13 299 1 295 146 0 0 chr11 63795940 63795988 -86987565 - MSTA LTR MaLR 0 428 381 207 0 0 0 chr11 63795988 63796011 -86987542 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2102 125 0 0 chr11 63796013 63796294 -86987259 - AluSq SINE Alu -32 281 1 3192 72 14 7 chr11 63796294 63796738 -86986815 + MER4A-int LTR ERV1 5464 5910 -688 2127 139 7 0 chr11 63796738 63797039 -86986514 + AluSx SINE Alu 1 303 -9 3349 103 51 19 chr11 63797039 63797603 -86985950 + MER4A-int LTR ERV1 6015 6596 -2 2188 162 69 107 chr11 63797611 63798235 -86985318 + MER4A LTR ERV1 1 600 0 1079 129 6 11 chr11 63798265 63798443 -86985110 - MER4D LTR ERV1 -726 177 1 1633 189 88 18 chr11 63798443 63798829 -86984724 + MER21B LTR ERV1 377 789 -74 839 170 7 20 chr11 63798830 63798977 -86984576 - AluJo SINE Alu -162 150 6 463 97 0 0 chr11 63799116 63799188 -86984365 - AluSp/q SINE Alu -6 307 236 351 0 0 0 chr11 63799200 63799239 -86984314 + (TG)n Simple_repeat Simple_repeat 2 40 0 961 117 0 0 chr11 63799246 63799374 -86984179 - AluSq/x SINE Alu -185 128 1 1988 138 24 3 chr11 63799734 63800030 -86983523 + AluSx SINE Alu 6 307 -5 2389 77 0 7 chr11 63800212 63800509 -86983044 + AluSc SINE Alu 1 295 -14 1369 111 6 0 chr11 63800757 63800937 -86982616 + AluSg/x SINE Alu 123 303 -9 850 215 25 5 chr11 63801093 63801293 -86982260 - AluY SINE Alu -104 207 4 981 195 0 27 chr11 63801294 63801479 -86982074 + AluJb SINE Alu 113 292 -20 714 234 68 71 chr11 63801502 63801739 -86981814 - LTR56 LTR ERV1 -146 299 63 2378 43 0 7 chr11 63801739 63802042 -86981511 - AluY SINE Alu 0 301 1 714 234 68 71 chr11 63802042 63802085 -86981468 - LTR56 LTR ERV1 -382 63 16 2412 68 3 16 chr11 63802085 63802395 -86981158 - AluSg SINE Alu -4 306 1 714 234 68 71 chr11 63802395 63802406 -86981147 - LTR56 LTR ERV1 -429 16 6 808 244 43 66 chr11 63802430 63802592 -86980961 + L1ME LINE L1 767 921 -5609 481 149 168 75 chr11 63802592 63802723 -86980830 + FLAM_A SINE Alu 1 141 0 808 244 43 66 chr11 63802723 63802862 -86980691 + L1ME LINE L1 921 1062 -5468 283 252 27 0 chr11 63802876 63802942 -86980611 + L1ME LINE L1 1166 1238 -5292 2349 107 7 0 chr11 63802942 63803251 -86980302 + AluSx SINE Alu 1 311 -1 283 252 27 0 chr11 63803251 63803295 -86980258 + L1ME LINE L1 1238 1279 -5251 993 129 0 22 chr11 63803296 63803435 -86980118 + AluSq/x SINE Alu 1 136 -177 323 214 0 0 chr11 63803445 63803501 -86980052 + L1ME LINE L1 1911 1966 -4574 1870 126 0 15 chr11 63803523 63803785 -86979768 + AluSx SINE Alu 1 258 -54 243 0 0 0 chr11 63803797 63803824 -86979729 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2287 100 13 0 chr11 63803829 63804128 -86979425 + AluSx SINE Alu 1 303 -9 1435 178 85 20 chr11 63804156 63804449 -86979104 - AluSx SINE Alu 0 312 1 1914 142 3 3 chr11 63804451 63804733 -86978820 + AluJo SINE Alu 29 310 -2 573 225 55 39 chr11 63805535 63805717 -86977836 - LTR41 LTR ERVL -586 187 3 260 284 32 11 chr11 63806043 63806138 -86977415 - ERVL LTR ERVL -330 5434 5338 602 210 66 39 chr11 63806186 63806367 -86977186 - LTR41 LTR ERVL -587 186 1 1354 158 117 0 chr11 63806401 63806641 -86976912 + AluSx SINE Alu 1 268 -44 589 0 13 26 chr11 63806650 63806728 -86976825 + (TAAAA)n Simple_repeat Simple_repeat 1 77 0 427 81 0 0 chr11 63806728 63806790 -86976763 + L1M4 LINE L1 2873 2934 -3212 2073 143 0 19 chr11 63806793 63807143 -86976410 + AluSx SINE Alu 1 312 0 363 182 57 45 chr11 63807145 63807233 -86976320 + L1M4 LINE L1 3136 3224 -2922 2354 88 0 0 chr11 63807233 63807546 -86976007 + AluSg SINE Alu 1 313 0 892 160 0 0 chr11 63807550 63807681 -86975872 + AluSq/x SINE Alu 3 133 -179 2287 93 3 13 chr11 63807686 63807988 -86975565 + AluY SINE Alu 1 299 -12 382 188 43 103 chr11 63807989 63808106 -86975447 + MER4-int LTR ERV1 3211 3320 -3278 5070 102 66 46 chr11 63808110 63809013 -86974540 + MER4-int LTR ERV1 3925 4808 -1790 2264 115 3 10 chr11 63809013 63809327 -86974226 - AluSq SINE Alu -1 312 1 2176 137 0 10 chr11 63809328 63809635 -86973918 - AluSx SINE Alu -8 304 1 5070 102 66 46 chr11 63809635 63809851 -86973702 + MER4-int LTR ERV1 4808 5018 -1580 2098 103 0 31 chr11 63809851 63810163 -86973390 + AluSc SINE Alu 1 303 0 5070 102 66 46 chr11 63810163 63810502 -86973051 + MER4-int LTR ERV1 5018 5475 -1123 679 240 78 20 chr11 63813042 63813246 -86970307 - MIR SINE MIR 0 262 47 1597 231 6 11 chr11 63813404 63813768 -86969785 + L1MD3 LINE L1 7617 7978 -17 1760 88 4 4 chr11 63813773 63814022 -86969531 - AluSg SINE Alu 0 305 57 682 118 0 0 chr11 63814056 63814149 -86969404 - AluSg SINE Alu -216 94 2 22 0 0 0 chr11 63814162 63814184 -86969369 + AT_rich Low_complexity Low_complexity 1 22 0 1837 156 10 10 chr11 63814207 63814496 -86969057 + AluJb SINE Alu 5 293 -19 2151 121 7 0 chr11 63814504 63814815 -86968738 + AluSx SINE Alu 1 313 0 204 273 146 55 chr11 63814854 63814964 -86968589 + MIR SINE MIR 106 225 -37 616 264 135 10 chr11 63815819 63816027 -86967526 - MIR SINE MIR -24 238 5 2277 103 7 0 chr11 63816149 63816451 -86967102 - AluSq SINE Alu -9 304 1 442 275 6 90 chr11 63816477 63816655 -86966898 - MIR SINE MIR -67 195 33 268 178 133 67 chr11 63816837 63816927 -86966626 - MIR3 SINE MIR -21 187 92 519 203 105 14 chr11 63817402 63817545 -86966008 - MIR3 SINE MIR -34 174 19 313 300 93 33 chr11 63818678 63818828 -86964725 - MIR SINE MIR -70 192 34 1062 302 77 29 chr11 63819046 63819734 -86963819 + L2 LINE L2 2545 3272 0 446 374 76 15 chr11 63820355 63820617 -86962936 + L2 LINE L2 2986 3263 -9 1057 171 101 9 chr11 63821223 63821440 -86962113 - MIR SINE MIR -16 246 10 308 380 0 0 chr11 63821657 63821799 -86961754 + (TG)n Simple_repeat Simple_repeat 1 142 0 308 303 48 21 chr11 63822721 63822866 -86960687 - MER5B DNA MER1_type -29 149 1 329 270 210 0 chr11 63823295 63823495 -86960058 - MIR SINE MIR 0 262 16 1866 163 3 0 chr11 63823600 63823895 -86959658 - AluSx SINE Alu -16 296 1 269 251 85 35 chr11 63824016 63824175 -86959378 - MIR SINE MIR -26 182 14 187 346 49 12 chr11 63824403 63824484 -86959069 + MIR SINE MIR 111 194 -68 2146 109 7 10 chr11 63825573 63825877 -86957676 + AluSx SINE Alu 1 303 -9 799 211 58 69 chr11 63825882 63826132 -86957421 + L1M4c LINE L1 1072 1323 -4980 1980 128 14 0 chr11 63826132 63826421 -86957132 + AluSx SINE Alu 1 293 -19 799 211 58 69 chr11 63826421 63826555 -86956998 + L1M4c LINE L1 1323 1780 -4523 668 231 0 15 chr11 63826557 63826691 -86956862 + FLAM_A SINE Alu 1 132 -1 956 152 103 0 chr11 63826706 63826890 -86956663 + MLT1B LTR MaLR 188 390 0 425 296 9 0 chr11 63826898 63827013 -86956540 + MER5A DNA MER1_type 60 175 -14 262 300 23 39 chr11 63826900 63827030 -86956523 - MER5A DNA MER1_type -50 139 12 * 2089 129 0 3 chr11 63827271 63827580 -86955973 + AluSc SINE Alu 1 308 -1 733 223 114 30 chr11 63827610 63828004 -86955549 + L1M4c LINE L1 1933 2359 -4025 1245 181 107 52 chr11 63828006 63828332 -86955221 - MER2 DNA MER2_type 0 344 1 1294 182 50 4 chr11 63828342 63828584 -86954969 - AluJb SINE Alu -15 297 45 332 153 42 102 chr11 63828586 63828619 -86954934 + L1M4c LINE L1 2374 2407 -3977 2235 68 21 0 chr11 63828619 63828900 -86954653 + AluY SINE Alu 1 287 -24 180 0 0 0 chr11 63828900 63828920 -86954633 + (CATAA)n Simple_repeat Simple_repeat 2 21 0 332 153 42 102 chr11 63828920 63829003 -86954550 + L1M4c LINE L1 2405 2484 -3900 685 153 7 139 chr11 63829004 63829137 -86954416 + L1M4c LINE L1 3043 3192 -3190 849 142 0 15 chr11 63829137 63829271 -86954282 + FLAM_C SINE Alu 2 133 0 685 153 7 139 chr11 63829271 63829286 -86954267 + L1M4c LINE L1 3192 3207 -3175 2222 103 6 0 chr11 63829286 63829597 -86953956 + AluSq SINE Alu 1 313 0 685 153 7 139 chr11 63829597 63829721 -86953832 + L1M4c LINE L1 3207 3280 -3102 1029 218 39 19 chr11 63829761 63830068 -86953485 + L1MA6 LINE L1 5987 6299 -1 218 247 13 58 chr11 63830199 63830353 -86953200 + G-rich Low_complexity Low_complexity 5 151 0 246 274 0 0 chr11 63832672 63832734 -86950819 + CT-rich Low_complexity Low_complexity 2 63 0 401 284 67 37 chr11 63833266 63833400 -86950153 + MIR3 SINE MIR 19 156 -52 2175 127 0 6 chr11 63833406 63833720 -86949833 - AluSx SINE Alu 0 312 1 501 210 38 22 chr11 63837297 63837458 -86946095 - MIR SINE MIR -61 147 15 655 267 58 15 chr11 63840391 63840597 -86942956 - MIR SINE MIR -1 261 47 1574 231 6 11 chr11 63840755 63841119 -86942434 + L1MD3 LINE L1 7617 7978 -17 1683 88 4 4 chr11 63841124 63841373 -86942180 - AluSg SINE Alu 0 305 57 228 158 0 0 chr11 63841407 63841445 -86942108 - Alu SINE Alu -206 94 57 678 113 10 0 chr11 63841476 63841573 -86941980 - AluSg1 SINE Alu -211 98 1 22 0 0 0 chr11 63841584 63841606 -86941947 + AT_rich Low_complexity Low_complexity 1 22 0 1793 151 10 10 chr11 63841629 63841920 -86941633 + AluJb SINE Alu 5 295 -17 2062 121 7 0 chr11 63841926 63842237 -86941316 + AluSx SINE Alu 1 313 0 227 273 146 55 chr11 63842276 63842386 -86941167 + MIR SINE MIR 106 225 -37 586 269 135 10 chr11 63843241 63843449 -86940104 - MIR SINE MIR -24 238 5 2178 103 7 0 chr11 63843571 63843873 -86939680 - AluSq SINE Alu -9 304 1 442 275 6 90 chr11 63843899 63844077 -86939476 - MIR SINE MIR -67 195 33 250 252 68 48 chr11 63844246 63844349 -86939204 - MIR3 SINE MIR -12 196 92 534 204 106 7 chr11 63844824 63844966 -86938587 - MIR3 SINE MIR -34 174 19 313 300 93 33 chr11 63846099 63846249 -86937304 - MIR SINE MIR -70 192 34 1127 298 76 29 chr11 63846467 63847156 -86936397 + L2 LINE L2 2545 3272 0 446 374 76 15 chr11 63847777 63848039 -86935514 + L2 LINE L2 2986 3263 -9 1057 171 101 9 chr11 63848645 63848862 -86934691 - MIR SINE MIR -16 246 10 308 380 0 0 chr11 63849079 63849221 -86934332 + (TG)n Simple_repeat Simple_repeat 1 142 0 308 303 48 21 chr11 63850143 63850288 -86933265 - MER5B DNA MER1_type -29 149 1 329 270 210 0 chr11 63850717 63850917 -86932636 - MIR SINE MIR 0 262 16 1866 163 3 0 chr11 63851022 63851317 -86932236 - AluSx SINE Alu -16 296 1 269 251 85 35 chr11 63851438 63851597 -86931956 - MIR SINE MIR -26 182 14 187 346 49 12 chr11 63851825 63851906 -86931647 + MIR SINE MIR 111 194 -68 2218 109 7 0 chr11 63852995 63853299 -86930254 + AluSx SINE Alu 1 306 -6 275 287 245 0 chr11 63853299 63853393 -86930160 + MER5A DNA MER1_type 67 183 -6 201 374 72 22 chr11 63853473 63853612 -86929941 - MIR3 SINE MIR -19 189 44 207 309 37 12 chr11 63854071 63854152 -86929401 - MIR SINE MIR -75 187 105 566 256 25 6 chr11 63855061 63855221 -86928332 + MER3 DNA MER1_type 17 179 -30 468 246 0 0 chr11 63855753 63855875 -86927678 + (CA)n Simple_repeat Simple_repeat 1 122 0 212 86 29 0 chr11 63856214 63856249 -86927304 + (CA)n Simple_repeat Simple_repeat 2 37 0 228 160 0 20 chr11 63856479 63856529 -86927024 + GA-rich Low_complexity Low_complexity 3 51 0 547 297 5 42 chr11 63858334 63858526 -86925027 - MIR3 SINE MIR -3 205 21 753 51 0 0 chr11 63859724 63859822 -86923731 + (GA)n Simple_repeat Simple_repeat 1 98 0 566 187 151 0 chr11 63861775 63861914 -86921639 + MER58C DNA MER1_type 56 215 0 222 274 0 14 chr11 63863061 63863134 -86920419 + GA-rich Low_complexity Low_complexity 4 75 0 653 213 10 58 chr11 63864878 63865068 -86918485 + MIR SINE MIR 10 192 -32 1035 252 5 0 chr11 63865360 63865582 -86917971 + MER58A DNA MER1_type 2 224 0 292 162 0 27 chr11 63865746 63865820 -86917733 + GA-rich Low_complexity Low_complexity 1 72 0 214 169 14 14 chr11 63867779 63867850 -86915703 + GA-rich Low_complexity Low_complexity 2 72 0 299 73 0 59 chr11 63868118 63868186 -86915367 + (CCA)n Simple_repeat Simple_repeat 2 65 0 278 270 0 0 chr11 63868886 63868949 -86914604 + (CA)n Simple_repeat Simple_repeat 1 63 0 211 308 11 11 chr11 63869025 63869116 -86914437 + GA-rich Low_complexity Low_complexity 1 91 0 223 275 0 0 chr11 63869181 63869237 -86914316 + MIR SINE MIR 107 153 -55 516 207 15 37 chr11 63870687 63870822 -86912731 + MER103 DNA DNA 34 165 -1 322 316 0 53 chr11 63871715 63871902 -86911651 + G-rich Low_complexity Low_complexity 3 179 0 321 89 0 0 chr11 63873852 63873897 -86909656 + (CA)n Simple_repeat Simple_repeat 1 45 0 198 91 0 0 chr11 63875688 63875721 -86907832 + (CA)n Simple_repeat Simple_repeat 1 33 0 255 122 0 0 chr11 63875827 63875876 -86907677 + (CA)n Simple_repeat Simple_repeat 2 50 0 192 77 0 0 chr11 63877172 63877198 -86906355 + (TG)n Simple_repeat Simple_repeat 2 27 0 507 249 67 18 chr11 63877713 63877878 -86905675 + MIR3 SINE MIR 32 204 -4 1695 121 30 74 chr11 63879578 63879876 -86903677 + AluSx SINE Alu 5 289 -23 420 20 0 0 chr11 63879885 63879934 -86903619 + (CA)n Simple_repeat Simple_repeat 2 50 0 198 200 0 0 chr11 63879972 63880017 -86903536 - L2 LINE L2 -90 3182 3138 2083 125 0 3 chr11 63880146 63880441 -86903112 - AluSq SINE Alu -19 294 1 290 213 0 0 chr11 63880441 63880502 -86903051 + MIR SINE MIR 61 121 -141 204 342 144 22 chr11 63880703 63880981 -86902572 - L2 LINE L2 -343 2971 2660 342 328 39 16 chr11 63881266 63881394 -86902159 + MIR3 SINE MIR 11 141 -67 573 228 222 6 chr11 63881429 63881600 -86901953 - MIR SINE MIR -35 227 20 822 270 133 38 chr11 63882129 63882521 -86901032 - L3 LINE CR1 -1 1576 1148 434 181 85 0 chr11 63882996 63883090 -86900463 + L2 LINE L2 3170 3271 -1 443 330 0 0 chr11 63883167 63883279 -86900274 + L2 LINE L2 3154 3265 -7 423 160 0 0 chr11 63883418 63883493 -86900060 + (CA)n Simple_repeat Simple_repeat 1 75 0 262 230 48 56 chr11 63883509 63883635 -86899918 + L2 LINE L2 2967 3091 -181 869 257 79 12 chr11 63883661 63883902 -86899651 + MIR SINE MIR 5 261 -1 186 349 63 24 chr11 63883999 63884125 -86899428 + L2 LINE L2 3140 3270 -2 293 315 105 28 chr11 63884620 63884836 -86898717 + MIR3 SINE MIR 11 232 -30 * 431 259 168 0 chr11 63884793 63884924 -86898629 - MIR SINE MIR 0 262 110 284 259 46 19 chr11 63885024 63885132 -86898421 + L2 LINE L2 2873 2983 -289 480 266 44 38 chr11 63885853 63886011 -86897542 - MIR SINE MIR -85 177 19 243 0 0 0 chr11 63887669 63887696 -86895857 + (CACCT)n Simple_repeat Simple_repeat 3 29 0 293 244 98 12 chr11 63888548 63888686 -86894867 + MIR SINE MIR 43 198 -10 576 278 26 26 chr11 63889809 63890000 -86893553 - MIR SINE MIR -12 250 60 308 299 60 45 chr11 63890274 63890408 -86893145 - MIR3 SINE MIR -63 145 10 219 305 0 55 chr11 63891058 63891186 -86892367 + GA-rich Low_complexity Low_complexity 2 122 0 248 290 108 12 chr11 63891461 63891565 -86891988 - MIR3 SINE MIR -32 176 61 639 244 90 43 chr11 63891796 63892030 -86891523 - MIR SINE MIR 0 262 18 520 276 2 0 chr11 63892166 63892292 -86891261 + MIR3 SINE MIR 34 162 -46 * 895 243 28 31 chr11 63892290 63892545 -86891008 - MIR SINE MIR 0 262 9 521 309 84 5 chr11 63893850 63894041 -86889512 + MIR SINE MIR 2 207 -55 326 308 32 39 chr11 63894949 63895244 -86888309 + L2 LINE L2 2729 3017 -255 400 295 9 0 chr11 63895317 63895422 -86888131 + MIR SINE MIR 154 259 -3 679 320 21 4 chr11 63895560 63895794 -86887759 - MIR SINE MIR -3 259 22 26 50 0 0 chr11 63902143 63902183 -86881370 + GC_rich Low_complexity Low_complexity 1 40 0 30 93 0 0 chr11 63902255 63902341 -86881212 + GC_rich Low_complexity Low_complexity 1 86 0 186 71 0 0 chr11 63902379 63902407 -86881146 + (CCCG)n Simple_repeat Simple_repeat 4 31 0 201 196 0 0 chr11 63902484 63902535 -86881018 + (TG)n Simple_repeat Simple_repeat 1 51 0 316 167 21 56 chr11 63902548 63902692 -86880861 + (CCG)n Simple_repeat Simple_repeat 2 140 0 238 193 11 11 chr11 63903454 63903542 -86880011 + (CA)n Simple_repeat Simple_repeat 1 88 0 192 77 0 0 chr11 63903907 63903933 -86879620 + (CA)n Simple_repeat Simple_repeat 1 26 0 1797 164 7 0 chr11 63904343 63904641 -86878912 + AluJo SINE Alu 1 300 -12 199 340 0 48 chr11 63904809 63904912 -86878641 - MIR3 SINE MIR -21 187 90 413 250 99 20 chr11 63905351 63905503 -86878050 + MIR SINE MIR 63 226 -36 2410 76 0 22 chr11 63905505 63905819 -86877734 + AluSg SINE Alu 1 307 -3 238 236 14 28 chr11 63905934 63906006 -86877547 - L3b LINE CR1 -194 1389 1319 415 240 30 0 chr11 63907222 63907322 -86876231 + MIR SINE MIR 44 146 -62 250 342 3 0 chr11 63907835 63907925 -86875628 + MIR SINE MIR 61 152 -56 233 343 150 7 chr11 63909668 63909808 -86873745 - MIR SINE MIR -9 253 94 326 326 56 9 chr11 63910070 63910285 -86873268 + L2 LINE L2 2065 2289 -1025 1905 132 36 7 chr11 63910616 63910919 -86872634 - AluSx SINE Alu 0 312 1 301 328 8 23 chr11 63911114 63911242 -86872311 + L2 LINE L2 3002 3127 -145 262 231 0 0 chr11 63911379 63911431 -86872122 - L2 LINE L2 0 3272 3221 181 259 86 0 chr11 63911724 63911782 -86871771 + L2 LINE L2 3205 3267 -5 215 284 69 29 chr11 63911898 63912000 -86871553 + MIR SINE MIR 157 262 0 370 282 24 32 chr11 63912034 63912158 -86871395 + MIR3 SINE MIR 54 176 -32 338 352 118 22 chr11 63912583 63912989 -86870564 + L2 LINE L2 2371 2815 -499 188 335 65 43 chr11 63913002 63913187 -86870366 - L2 LINE L2 -240 3032 2844 * 2454 231 95 137 chr11 63913180 63913746 -86869807 - L2 LINE L2 -22 3291 2702 180 0 0 0 chr11 63913746 63913766 -86869787 + (TG)n Simple_repeat Simple_repeat 2 21 0 2454 231 95 137 chr11 63913766 63914050 -86869503 - L2 LINE L2 -611 2702 2407 883 171 25 62 chr11 63914050 63914132 -86869421 - MER106A DNA MER1_type -5 231 147 2172 97 6 22 chr11 63914132 63914443 -86869110 - AluSx SINE Alu -6 306 1 883 171 25 62 chr11 63914443 63914600 -86868953 - MER106A DNA MER1_type -89 147 1 2454 231 95 137 chr11 63914600 63915076 -86868477 - L2 LINE L2 -906 2407 1912 1473 196 10 32 chr11 63915076 63915255 -86868298 - AluJo SINE Alu -8 304 133 2336 86 0 0 chr11 63915255 63915558 -86867995 - AluY SINE Alu -8 303 1 1473 196 10 32 chr11 63915558 63915689 -86867864 - AluJo SINE Alu -179 133 1 2454 231 95 137 chr11 63915689 63916286 -86867267 - L2 LINE L2 -1401 1912 1225 327 296 19 86 chr11 63916346 63916508 -86867045 + MIR SINE MIR 5 155 -107 450 0 0 0 chr11 63917155 63917205 -86866348 + (TG)n Simple_repeat Simple_repeat 2 51 0 263 281 83 10 chr11 63917893 63917989 -86865564 - MIR3 SINE MIR -25 183 81 372 269 65 0 chr11 63918145 63918238 -86865315 - L2 LINE L2 -20 3293 3195 704 233 26 37 chr11 63918242 63918431 -86865122 - MIR SINE MIR -72 190 4 225 218 268 28 chr11 63918431 63918573 -86864980 + MIR3 SINE MIR 18 193 -15 352 248 128 21 chr11 63918785 63918926 -86864627 + MIR3 SINE MIR 30 185 -23 239 176 71 10 chr11 63919623 63919699 -86863854 - MIR SINE MIR -59 149 69 740 303 58 23 chr11 63919867 63920214 -86863339 + L2 LINE L2 2914 3272 0 271 200 114 38 chr11 63921405 63921510 -86862043 + MIR3 SINE MIR 66 178 -30 334 240 13 0 chr11 63921597 63921672 -86861881 + L2 LINE L2 3225 3300 -13 185 255 0 0 chr11 63922418 63922469 -86861084 - L2 LINE L2 -298 2974 2924 520 100 0 0 chr11 63922569 63922639 -86860914 + AluS SINE Alu 1 70 -243 1978 77 0 8 chr11 63922639 63922899 -86860654 + AluSx SINE Alu 39 296 -16 442 231 39 0 chr11 63923478 63923582 -86859971 + MIR3 SINE MIR 47 154 -54 421 265 103 15 chr11 63923837 63923973 -86859580 + MIR SINE MIR 33 180 -82 258 247 65 39 chr11 63925384 63925461 -86858092 - MIR SINE MIR -19 243 165 994 132 56 112 chr11 63925467 63925654 -86857899 + MER46A DNA MER2_type 1 197 -2534 2151 101 6 22 chr11 63925654 63925970 -86857583 - AluSp SINE Alu -2 311 1 2186 82 0 0 chr11 63925975 63926285 -86857268 - AluY SINE Alu 0 310 1 1977 94 58 0 chr11 63926288 63926564 -86856989 - AluSq SINE Alu -21 292 1 994 132 56 112 chr11 63926564 63926581 -86856972 + MER46A DNA MER2_type 203 219 -2512 1456 145 205 0 chr11 63926581 63926830 -86856723 - AluJo SINE Alu -1 301 2 994 132 56 112 chr11 63926830 63926863 -86856690 + MER46A DNA MER2_type 219 236 0 494 263 58 0 chr11 63926873 63927010 -86856543 - MIR SINE MIR -106 156 12 231 203 136 17 chr11 63927487 63927546 -86856007 + MIR SINE MIR 81 146 -62 1201 324 28 25 chr11 63928858 63929132 -86854421 - L1MC4a LINE L1 -85 6036 5764 2254 102 0 0 chr11 63929132 63929435 -86854118 - AluSg SINE Alu -7 303 1 1201 324 28 25 chr11 63929435 63929763 -86853790 - L1MC4a LINE L1 -357 5764 5427 374 278 28 9 chr11 63929889 63929997 -86853556 - MIR SINE MIR -117 145 36 267 31 0 0 chr11 63931015 63931047 -86852506 + (TG)n Simple_repeat Simple_repeat 1 32 0 226 94 0 38 chr11 63931095 63931148 -86852405 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 408 128 0 0 chr11 63931264 63931342 -86852211 + (GA)n Simple_repeat Simple_repeat 2 79 0 389 243 107 17 chr11 63931940 63932086 -86851467 + MIR SINE MIR 35 191 -69 1948 224 42 29 chr11 63933324 63933780 -86849773 + MLT1C LTR MaLR 2 463 -4 1720 107 127 0 chr11 63933870 63934168 -86849385 + AluSx SINE Alu 1 330 0 1909 119 3 39 chr11 63934233 63934543 -86849010 - AluSx SINE Alu -12 300 2 292 234 51 42 chr11 63934567 63934702 -86848851 - MLT1L LTR MaLR 0 615 376 406 251 86 43 chr11 63935028 63935191 -86848362 - MIR3 SINE MIR -28 180 11 2976 217 20 40 chr11 63935707 63936246 -86847307 + Zaphod DNA AcHobo 136 684 -3347 2199 139 33 43 chr11 63936246 63936614 -86846939 + THE1B LTR MaLR 1 364 0 2976 217 20 40 chr11 63936614 63936723 -86846830 + Zaphod DNA AcHobo 684 794 -3237 1680 199 3 0 chr11 63936723 63937020 -86846533 - AluJo SINE Alu -14 298 1 2976 217 20 40 chr11 63937020 63937047 -86846506 + Zaphod DNA AcHobo 794 820 -3211 1874 153 3 0 chr11 63937047 63937334 -86846219 + AluSx SINE Alu 1 288 -24 2976 217 20 40 chr11 63937334 63937490 -86846063 + Zaphod DNA AcHobo 820 953 -3078 1347 170 188 3 chr11 63937506 63937842 -86845711 + Zaphod DNA AcHobo 3634 4031 0 3930 162 56 37 chr11 63937846 63938296 -86845257 - L1MB7 LINE L1 0 6184 5744 1711 102 4 0 chr11 63938296 63938531 -86845022 + AluSx SINE Alu 2 237 -75 3930 162 56 37 chr11 63938531 63938649 -86844904 - L1MB7 LINE L1 -440 5744 5630 2424 45 3 0 chr11 63938649 63938940 -86844613 - AluY SINE Alu -19 292 1 3930 162 56 37 chr11 63938940 63939234 -86844319 - L1MB7 LINE L1 -554 5630 5305 1867 126 33 27 chr11 63939246 63939415 -86844138 - AluSq SINE Alu -8 305 139 194 0 39 0 chr11 63939415 63939441 -86844112 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1875 144 3 0 chr11 63939441 63939725 -86843828 - AluSx SINE Alu -27 285 1 1867 126 33 27 chr11 63939725 63939855 -86843698 - AluSq SINE Alu -173 140 3 619 251 103 0 chr11 63940121 63940296 -86843257 + MIR SINE MIR 14 206 -56 274 327 53 0 chr11 63940347 63940460 -86843093 - L3 LINE CR1 -120 1457 1339 533 254 147 11 chr11 63940965 63941142 -86842411 + MIR SINE MIR 17 217 -45 376 287 0 0 chr11 63941269 63941370 -86842183 - MIR SINE MIR -115 147 47 2114 99 7 0 chr11 63941641 63941924 -86841629 - AluSx SINE Alu -13 299 15 181 205 26 0 chr11 63942146 63942185 -86841368 + MIR SINE MIR 111 150 -58 454 260 172 21 chr11 63942530 63942722 -86840831 - MIR SINE MIR -34 228 8 1735 107 118 15 chr11 63942927 63943199 -86840354 + AluSg SINE Alu 3 302 -8 801 254 36 13 chr11 63943229 63943453 -86840100 - MIR SINE MIR 0 262 34 1098 169 85 0 chr11 63944361 63944562 -86838991 + MER39 LTR ERV1 1 218 -489 1572 116 17 0 chr11 63944570 63944803 -86838750 + AluSx SINE Alu 1 237 -75 1659 127 0 4 chr11 63944810 63945054 -86838499 + AluSx SINE Alu 63 305 -7 1064 228 42 19 chr11 63945107 63945562 -86837991 - MLT1J LTR MaLR -8 503 1 2140 108 3 3 chr11 63945664 63945959 -86837594 - AluSx SINE Alu -17 295 1 1432 6 0 0 chr11 63945972 63946130 -86837423 - L1PA2 LINE L1 -1 6154 5997 236 182 0 0 chr11 63947610 63947654 -86835899 + MIR SINE MIR 78 121 -141 246 283 43 43 chr11 63948047 63948139 -86835414 + MIR SINE MIR 94 185 -77 207 0 0 0 chr11 63948730 63948753 -86834800 + (CCCCAG)n Simple_repeat Simple_repeat 2 24 0 280 302 63 71 chr11 63949921 63950176 -86833377 - L2 LINE L2 -540 2774 2522 286 357 9 9 chr11 63950188 63950300 -86833253 + MER5B DNA MER1_type 1 112 -66 1860 136 0 4 chr11 63950311 63950624 -86832929 - AluSg SINE Alu 0 312 1 1862 95 44 15 chr11 63950660 63950933 -86832620 + AluSx SINE Alu 1 281 -31 1661 130 14 18 chr11 63950936 63951213 -86832340 - L1MB2 LINE L1 -8 6163 5888 617 97 0 11 chr11 63951244 63951482 -86832071 + AluSx SINE Alu 8 310 0 214 310 0 0 chr11 63951491 63951549 -86832004 - MER5A DNA MER1_type -129 60 3 243 195 256 0 chr11 63951781 63951863 -86831690 + MER5A DNA MER1_type 4 106 -83 764 315 17 0 chr11 63952307 63952542 -86831011 - MIR SINE MIR -15 247 9 284 355 66 8 chr11 63952559 63952680 -86830873 - MIR SINE MIR -122 140 13 1632 156 0 0 chr11 63952698 63952941 -86830612 + Charlie3 DNA MER1_type 1 243 -2467 2184 101 0 7 chr11 63952941 63953247 -86830306 - AluSp SINE Alu -9 304 1 239 111 0 0 chr11 63953262 63953298 -86830255 + Charlie3 DNA MER1_type 2667 2702 -8 191 268 36 0 chr11 63953303 63953359 -86830194 - MIR SINE MIR -117 145 88 1477 178 27 0 chr11 63953484 63953742 -86829811 + AluJb SINE Alu 37 301 -11 2289 103 0 3 chr11 63953802 63954113 -86829440 + AluSg SINE Alu 1 310 0 2111 109 0 3 chr11 63954495 63954789 -86828764 - AluSq SINE Alu -20 293 1 937 204 12 0 chr11 63955010 63955182 -86828371 - MER45A DNA AcHobo 0 178 5 192 158 0 0 chr11 63957148 63957186 -86826367 + (CTG)n Simple_repeat Simple_repeat 3 40 0 317 262 107 33 chr11 63957303 63957425 -86826128 + L1M4 LINE L1 3047 3177 -2969 1973 111 0 16 chr11 63957473 63957779 -86825774 + AluSc SINE Alu 2 302 -7 612 234 14 21 chr11 63957780 63957925 -86825628 - MER5B DNA MER1_type -34 144 1 2105 97 0 0 chr11 63957929 63958219 -86825334 + AluY SINE Alu 3 292 -19 322 260 100 0 chr11 63958460 63958560 -86824993 + MLT1K LTR MaLR 454 563 -25 274 309 12 0 chr11 63958588 63958669 -86824884 + MIR SINE MIR 175 256 -6 240 277 0 31 chr11 63959027 63959092 -86824461 - L2 LINE L2 -5 3267 3205 1960 105 3 58 chr11 63959488 63959813 -86823740 + AluSc SINE Alu 1 307 -2 1702 176 18 15 chr11 63960089 63960429 -86823124 + MLT1A1 LTR MaLR 25 365 0 775 276 72 82 chr11 63960432 63960632 -86822921 - L1MC4a LINE L1 -1872 5936 5736 1611 163 0 14 chr11 63960632 63960909 -86822644 - AluJb SINE Alu -6 306 34 775 276 72 82 chr11 63960909 63960925 -86822628 - L1MC4a LINE L1 -2072 5736 5721 2338 93 0 0 chr11 63960925 63961235 -86822318 - AluSq SINE Alu -3 310 1 775 276 72 82 chr11 63961235 63961445 -86822108 - L1MC4a LINE L1 -2087 5721 5513 236 331 65 0 chr11 63961468 63961607 -86821946 - L1ME4a LINE L1 -4 6117 5970 638 309 37 0 chr11 63961755 63961946 -86821607 + MIR SINE MIR 51 248 -14 2042 75 0 0 chr11 63961946 63962201 -86821352 + AluSq SINE Alu 26 280 -33 321 26 0 0 chr11 63962205 63962243 -86821310 + (CA)n Simple_repeat Simple_repeat 2 39 0 336 326 70 17 chr11 63962245 63962417 -86821136 - L1ME4a LINE L1 -280 5841 5661 1513 179 27 94 chr11 63962641 63962967 -86820586 + L1MB7 LINE L1 5720 6019 -165 2299 87 0 6 chr11 63962967 63963278 -86820275 - AluSg SINE Alu -1 309 1 1513 179 27 94 chr11 63963278 63963396 -86820157 + L1MB7 LINE L1 6019 6143 -41 304 275 114 38 chr11 63963520 63963651 -86819902 - MER5B DNA MER1_type -11 167 27 4217 123 26 3 chr11 63963763 63964383 -86819170 - MER41B LTR ERV1 0 635 2 508 223 211 6 chr11 63964414 63964589 -86818964 + MIR SINE MIR 21 231 -31 1533 149 50 29 chr11 63964685 63964966 -86818587 - AluJo SINE Alu -25 287 1 2235 99 7 0 chr11 63965284 63965587 -86817966 + AluSx SINE Alu 1 305 -7 2432 65 3 0 chr11 63966138 63966447 -86817106 - AluY SINE Alu 0 311 2 314 257 30 20 chr11 63966486 63966587 -86816966 - L1M4 LINE L1 -2939 3207 3106 2507 137 7 100 chr11 63966705 63966890 -86816663 - L1MB3 LINE L1 -102 6081 5880 2296 88 3 3 chr11 63966890 63967196 -86816357 - AluSx SINE Alu -6 306 1 2507 137 7 100 chr11 63967196 63967343 -86816210 - L1MB3 LINE L1 -303 5880 5821 1980 135 6 6 chr11 63967343 63967654 -86815899 - AluSx SINE Alu -1 311 1 2507 137 7 100 chr11 63967654 63967888 -86815665 - L1MB3 LINE L1 -362 5821 5567 971 92 8 0 chr11 63968003 63968134 -86815419 - AluY SINE Alu -179 132 1 240 277 0 31 chr11 63968529 63968594 -86814959 + L2 LINE L2 3205 3267 -5 217 284 45 11 chr11 63968951 63969039 -86814514 - MIR SINE MIR -6 256 166 238 250 31 0 chr11 63969060 63969124 -86814429 - MLT1K LTR MaLR -26 562 497 232 265 108 85 chr11 63969176 63969399 -86814154 - MLT1L LTR MaLR -200 415 188 2124 93 0 0 chr11 63969401 63969691 -86813862 - AluY SINE Alu -19 292 3 612 234 14 21 chr11 63969695 63969840 -86813713 + MER5B DNA MER1_type 1 144 -34 2115 119 7 0 chr11 63969841 63970144 -86813409 - AluSx SINE Alu -7 305 1 2195 85 16 3 chr11 63970488 63970793 -86812760 + AluSc SINE Alu 1 309 0 1458 174 81 38 chr11 63971176 63971314 -86812239 + MLT2B1 LTR ERVL 1 132 -383 2088 130 3 0 chr11 63971314 63971621 -86811932 + AluSx SINE Alu 1 308 -4 1458 174 81 38 chr11 63971621 63971932 -86811621 + MLT2B1 LTR ERVL 132 513 -2 380 271 54 47 chr11 63971983 63972112 -86811441 + MLT1H LTR MaLR 420 549 0 2414 90 0 0 chr11 63972294 63972604 -86810949 - AluSx SINE Alu -2 310 1 1033 108 0 0 chr11 63972604 63972743 -86810810 - AluSq/x SINE Alu -172 141 3 1678 176 0 10 chr11 63972777 63973066 -86810487 - AluJo SINE Alu -24 288 3 863 200 52 57 chr11 63973086 63973316 -86810237 + MIR SINE MIR 32 260 -2 352 325 96 0 chr11 63973314 63973480 -86810073 - MIR SINE MIR -49 213 32 * 2158 95 0 13 chr11 63973480 63973786 -86809767 - AluSg SINE Alu -8 302 1 2298 68 9 43 chr11 63973932 63974254 -86809299 - AluSp SINE Alu -2 311 1 270 226 71 32 chr11 63974371 63974485 -86809068 + MIR SINE MIR 37 158 -50 2353 93 3 0 chr11 63974878 63975188 -86808365 + AluSp SINE Alu 2 312 -1 286 267 89 34 chr11 63975622 63975768 -86807785 + L1MC4 LINE L1 7596 7749 -293 1975 141 3 0 chr11 63975854 63976158 -86807395 + AluSx SINE Alu 6 310 -2 918 143 0 0 chr11 63976172 63976305 -86807248 + FLAM_C SINE Alu 1 133 0 2230 84 7 7 chr11 63976332 63976631 -86806922 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr11 63976631 63976652 -86806901 + AT_rich Low_complexity Low_complexity 1 21 0 2173 154 60 10 chr11 63976770 63977392 -86806161 + MER39 LTR ERV1 1 707 0 2057 132 0 0 chr11 63977429 63977717 -86805836 - AluSx SINE Alu -24 288 1 8096 52 5 0 chr11 63978347 63979311 -86804242 - LTR5 LTR ERVK 0 969 1 2141 102 7 13 chr11 63979352 63979655 -86803898 - AluSx SINE Alu -11 301 1 311 251 22 39 chr11 63979780 63979959 -86803594 + G-rich Low_complexity Low_complexity 2 177 0 186 188 0 0 chr11 63980014 63980062 -86803491 - L2 LINE L2 -345 2969 2922 1546 242 41 62 chr11 63980424 63980632 -86802921 - MER20B DNA MER1_type -18 765 554 2242 113 0 0 chr11 63980632 63980942 -86802611 + AluSx SINE Alu 3 312 0 1546 242 41 62 chr11 63980942 63981246 -86802307 - MER20B DNA MER1_type -229 554 264 1912 138 10 0 chr11 63981645 63981935 -86801618 + AluSx SINE Alu 1 293 -19 620 281 25 10 chr11 63982008 63982207 -86801346 - MIR SINE MIR -54 208 7 3369 102 106 18 chr11 63983112 63983465 -86800088 + MER41A LTR ERV1 1 321 -233 2052 109 3 3 chr11 63983465 63983758 -86799795 + AluSq SINE Alu 5 297 -16 2341 80 0 6 chr11 63983758 63984071 -86799482 + AluY SINE Alu 1 311 0 3369 102 106 18 chr11 63984071 63984225 -86799328 + MER41A LTR ERV1 320 554 0 412 224 0 0 chr11 63984267 63984352 -86799201 + L1ME LINE L1 5461 5545 -617 1307 177 29 4 chr11 63984352 63984595 -86798958 - MSTB LTR MaLR 0 426 178 1497 130 0 30 chr11 63984598 63984829 -86798724 + AluSq SINE Alu 1 224 -89 448 162 155 0 chr11 63984944 63985059 -86798494 - MSTB LTR MaLR -245 183 45 1974 109 3 26 chr11 63985059 63985370 -86798183 - AluSx SINE Alu -8 304 1 586 100 0 11 chr11 63985370 63985460 -86798093 + LTR49 LTR ERV1 507 595 0 * 2316 169 111 22 chr11 63985460 63985955 -86797598 + MER21A LTR ERV1 390 929 -2 2325 97 0 3 chr11 63985967 63986335 -86797218 + AluSg SINE Alu 1 367 0 2110 98 0 11 chr11 63986376 63986695 -86796858 + AluSx SINE Alu 1 316 0 2177 158 2 54 chr11 63986755 63986884 -86796669 + L1M3 LINE L1 5363 5497 -686 2013 126 3 0 chr11 63986884 63987185 -86796368 + AluSx SINE Alu 8 309 -3 2122 89 0 3 chr11 63987189 63987502 -86796051 + AluY SINE Alu 1 312 0 231 88 0 0 chr11 63987506 63987540 -86796013 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2177 158 2 54 chr11 63987540 63987822 -86795731 + L1M3 LINE L1 5503 5763 -420 990 106 14 0 chr11 63987860 63988001 -86795552 + AluSq/x SINE Alu 1 143 -170 244 289 0 40 chr11 63989076 63989152 -86794401 + Charlie4 DNA MER1_type 1883 1955 -6 235 342 3 0 chr11 63989153 63989243 -86794310 - MIR SINE MIR -56 152 61 410 240 30 0 chr11 63989756 63989856 -86793697 - MIR SINE MIR -62 146 44 230 236 14 28 chr11 63991074 63991146 -86792407 + L3b LINE CR1 1319 1389 -194 2458 68 0 3 chr11 63991261 63991568 -86791985 - AluSx SINE Alu -5 307 2 2107 129 3 0 chr11 63992508 63992817 -86790736 - AluSx SINE Alu -2 310 1 520 310 6 6 chr11 63992914 63993072 -86790481 + MIR3 SINE MIR 14 171 -37 371 279 55 60 chr11 63993089 63993290 -86790263 - L2 LINE L2 -13 3259 3060 3653 117 25 16 chr11 63993676 63994104 -86789449 + MER41C LTR ERV1 1 438 -116 2046 86 18 4 chr11 63994104 63994416 -86789137 - AluSx SINE Alu 0 316 1 3653 117 25 16 chr11 63994416 63994535 -86789018 + MER41C LTR ERV1 438 554 0 497 191 113 0 chr11 63994544 63994659 -86788894 - MER5B DNA MER1_type 0 178 51 966 155 17 6 chr11 63994875 63995056 -86788497 - MER53 DNA DNA -6 183 1 357 265 10 20 chr11 63995078 63995180 -86788373 + MIR SINE MIR 35 135 -73 231 114 0 0 chr11 63995336 63995371 -86788182 + (TCCA)n Simple_repeat Simple_repeat 1 35 0 2341 75 0 0 chr11 63995470 63995765 -86787788 - AluY SINE Alu -16 295 1 216 241 35 0 chr11 63995779 63995837 -86787716 + CT-rich Low_complexity Low_complexity 1 60 0 331 318 221 38 chr11 63995916 63996309 -86787244 - L2 LINE L2 -14 3299 2835 2244 95 0 3 chr11 63996370 63996666 -86786887 + AluSc SINE Alu 1 295 -14 1560 204 75 33 chr11 63996718 63997116 -86786437 - MLT1D LTR MaLR 0 505 91 2108 111 10 3 chr11 63997134 63997441 -86786112 + AluSx SINE Alu 1 309 -3 983 164 0 18 chr11 63997448 63997604 -86785949 + AluSg/x SINE Alu 128 282 -28 180 0 0 0 chr11 63997604 63997624 -86785929 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 455 227 0 0 chr11 63997632 63997720 -86785833 - MLT1D LTR MaLR -417 88 1 1955 207 44 15 chr11 63997723 63997784 -86785769 + L1ME3 LINE L1 5648 5706 -456 1880 180 48 22 chr11 63997784 63998140 -86785413 - MLT1A1 LTR MaLR 0 365 1 1955 207 44 15 chr11 63998140 63998533 -86785020 + L1ME3 LINE L1 5706 6115 -47 960 86 23 0 chr11 63998573 63998701 -86784852 - AluYb8 SINE Alu -185 133 3 386 313 166 5 chr11 63998723 63998940 -86784613 - L2 LINE L2 -556 2758 2507 1344 111 0 0 chr11 63998995 63999534 -86784019 + (TGGA)n Simple_repeat Simple_repeat 1 539 0 324 276 0 0 chr11 63999560 63999687 -86783866 + (TGGG)n Simple_repeat Simple_repeat 2 128 0 259 274 14 0 chr11 64000028 64000101 -86783452 + (CCA)n Simple_repeat Simple_repeat 3 76 0 273 247 103 41 chr11 64001434 64001580 -86781973 - MIR SINE MIR 0 262 108 180 77 0 0 chr11 64002073 64002099 -86781454 + (CA)n Simple_repeat Simple_repeat 2 27 0 2104 89 21 0 chr11 64002509 64002790 -86780763 - AluSg SINE Alu -23 287 1 2408 77 0 0 chr11 64002792 64003092 -86780461 - AluSx SINE Alu -12 300 1 227 286 0 29 chr11 64003112 64003182 -86780371 - MER5A DNA MER1_type -2 187 120 2117 96 7 7 chr11 64003504 64003805 -86779748 - AluSx SINE Alu -11 301 1 182 331 69 55 chr11 64004462 64004737 -86778816 + L2 LINE L2 2948 3226 -46 207 245 0 0 chr11 64004873 64004922 -86778631 + G-rich Low_complexity Low_complexity 1 49 0 2141 102 7 13 chr11 64006096 64006399 -86777154 + AluSx SINE Alu 1 301 -11 8096 52 5 0 chr11 64006440 64007404 -86776149 + LTR5 LTR ERVK 1 969 0 2057 132 0 0 chr11 64008034 64008322 -86775231 + AluSx SINE Alu 1 288 -24 2173 154 75 9 chr11 64008359 64008981 -86774572 - MER39 LTR ERV1 0 707 1 358 226 33 127 chr11 64008985 64009111 -86774442 - L1ME4a LINE L1 -24 6097 5961 2230 84 7 7 chr11 64009111 64009410 -86774143 - AluSx SINE Alu -13 299 1 358 226 33 127 chr11 64009410 64009437 -86774116 - L1ME4a LINE L1 -160 5961 5933 918 143 0 0 chr11 64009437 64009570 -86773983 - FLAM_C SINE Alu 0 133 1 358 226 33 127 chr11 64009570 64009584 -86773969 - L1ME4a LINE L1 -188 5933 5949 1975 141 3 0 chr11 64009584 64009888 -86773665 - AluSx SINE Alu -2 310 6 358 226 33 127 chr11 64009888 64009930 -86773623 - L1ME4a LINE L1 -171 5950 5906 286 267 89 34 chr11 64009974 64010120 -86773433 - L1MC4 LINE L1 -293 7749 7596 191 211 0 0 chr11 64010427 64010465 -86773088 - MIR SINE MIR -61 147 110 2353 93 3 0 chr11 64010554 64010864 -86772689 - AluSp SINE Alu -1 312 2 270 226 71 32 chr11 64011257 64011371 -86772182 - MIR SINE MIR -50 158 37 2303 71 3 40 chr11 64011488 64011811 -86771742 + AluSp SINE Alu 1 311 -2 2158 95 0 13 chr11 64011957 64012263 -86771290 + AluSg SINE Alu 1 302 -8 345 331 96 0 chr11 64012263 64012429 -86771124 + MIR SINE MIR 32 213 -49 * 863 200 52 57 chr11 64012427 64012657 -86770896 - MIR SINE MIR -2 260 32 1663 173 0 39 chr11 64012677 64012989 -86770564 + AluJo SINE Alu 3 302 -10 1033 108 0 0 chr11 64013000 64013139 -86770414 + AluSq/x SINE Alu 3 141 -171 2287 92 0 13 chr11 64013139 64013453 -86770100 + AluSx SINE Alu 1 310 -2 380 271 54 47 chr11 64013635 64013764 -86769789 - MLT1H LTR MaLR 0 549 420 1458 174 81 38 chr11 64013815 64014126 -86769427 - MLT2B1 LTR ERVL -2 513 132 2159 127 0 0 chr11 64014126 64014434 -86769119 - AluSx SINE Alu -4 308 1 1458 174 81 38 chr11 64014434 64014572 -86768981 - MLT2B1 LTR ERVL -383 132 1 2160 85 16 7 chr11 64014955 64015261 -86768292 - AluSc SINE Alu 0 309 1 216 218 0 18 chr11 64015517 64015572 -86767981 + GA-rich Low_complexity Low_complexity 1 54 0 2334 94 0 0 chr11 64016395 64016702 -86766851 + AluSq SINE Alu 1 307 -6 1818 125 0 43 chr11 64016924 64017227 -86766326 - AluSx SINE Alu -22 290 1 1307 177 29 4 chr11 64017230 64017473 -86766080 + MSTB LTR MaLR 178 426 0 378 226 12 0 chr11 64017473 64017557 -86765996 - L1ME LINE L1 -619 5545 5461 3428 93 108 16 chr11 64017598 64017751 -86765802 - MER41A LTR ERV1 0 554 417 2212 96 0 10 chr11 64017751 64018065 -86765488 - AluY SINE Alu 0 311 1 2052 109 3 3 chr11 64018065 64018358 -86765195 - AluSq SINE Alu -16 297 5 3428 93 108 16 chr11 64018358 64018710 -86764843 - MER41A LTR ERV1 -136 418 1 620 281 25 10 chr11 64019615 64019814 -86763739 + MIR SINE MIR 7 208 -54 392 140 0 0 chr11 64019827 64019884 -86763669 + AluSc SINE Alu 113 169 -130 609 123 0 0 chr11 64019884 64020011 -86763542 + AluY SINE Alu 203 329 0 1909 119 3 39 chr11 64020076 64020386 -86763167 - AluSx SINE Alu -12 300 2 292 234 51 42 chr11 64020410 64020545 -86763008 - MLT1L LTR MaLR 0 615 376 430 251 86 43 chr11 64020871 64021034 -86762519 - MIR3 SINE MIR -28 180 11 2316 226 19 30 chr11 64021550 64022089 -86761464 + Zaphod DNA AcHobo 136 679 -3352 2191 139 33 43 chr11 64022089 64022457 -86761096 + THE1B LTR MaLR 1 364 0 2316 226 19 30 chr11 64022457 64022566 -86760987 + Zaphod DNA AcHobo 679 779 -3252 1726 199 3 0 chr11 64022566 64022863 -86760690 - AluJo SINE Alu -14 298 1 2316 226 19 30 chr11 64022863 64022884 -86760669 + Zaphod DNA AcHobo 779 799 -3232 1756 150 8 0 chr11 64022890 64023156 -86760397 + AluSx SINE Alu 1 268 -44 272 258 17 75 chr11 64024992 64025112 -86758441 - MIR3 SINE MIR -15 193 81 2183 126 0 0 chr11 64025572 64025882 -86757671 + AluSg SINE Alu 1 310 0 338 176 187 33 chr11 64025914 64025931 -86757622 - L1ME4a LINE L1 -53 6068 6055 1628 140 98 3 chr11 64025931 64026216 -86757337 + AluSx SINE Alu 1 312 0 338 176 187 33 chr11 64026216 64026289 -86757264 - L1ME4a LINE L1 -66 6055 5964 289 299 23 46 chr11 64026710 64026797 -86756756 - MER5A DNA MER1_type -53 136 52 387 276 86 40 chr11 64026889 64027041 -86756512 - MER5A DNA MER1_type -14 175 17 307 218 81 48 chr11 64027133 64027257 -86756296 + MER5A DNA MER1_type 9 136 -53 292 330 75 27 chr11 64027268 64027456 -86756097 - MIR SINE MIR -38 224 28 296 206 63 0 chr11 64028847 64028910 -86754643 + L2 LINE L2 3244 3310 -3 2312 87 0 0 chr11 64029416 64029714 -86753839 + AluY SINE Alu 1 298 -13 258 119 0 0 chr11 64029714 64029756 -86753797 - MIR SINE MIR -76 132 91 2471 60 3 0 chr11 64030887 64031186 -86752367 - AluY SINE Alu -11 300 1 246 305 114 38 chr11 64031273 64031378 -86752175 - MIR SINE MIR -108 154 42 269 282 64 0 chr11 64031395 64031473 -86752080 + MIR SINE MIR 174 256 -6 2190 78 14 14 chr11 64031588 64031884 -86751669 + AluSx SINE Alu 1 296 -16 245 269 142 60 chr11 64031990 64032124 -86751429 + MIR SINE MIR 47 191 -71 209 370 24 24 chr11 64033201 64033328 -86750225 + L2 LINE L2 2727 2853 -461 275 298 105 16 chr11 64033912 64034036 -86749517 - MIR SINE MIR -10 252 118 198 271 0 0 chr11 64036722 64036770 -86746783 + MIR SINE MIR 40 87 -121 195 205 0 0 chr11 64037024 64037063 -86746490 - MIR SINE MIR -89 119 81 238 358 99 20 chr11 64039435 64039586 -86743967 - L2 LINE L2 -665 2649 2487 646 165 113 0 chr11 64039914 64040029 -86743524 - AluJb SINE Alu -17 295 168 2263 83 0 22 chr11 64040031 64040343 -86743210 - AluY SINE Alu -6 305 1 293 250 90 35 chr11 64040393 64040463 -86743090 + L1ME LINE L1 5600 5665 -456 1588 137 111 7 chr11 64040463 64040734 -86742819 + AluSg SINE Alu 1 299 -11 293 250 90 35 chr11 64040734 64040807 -86742746 + L1ME LINE L1 5665 5751 -370 1255 52 0 0 chr11 64040887 64041042 -86742511 - L1PA4 LINE L1 -2 6153 5999 1271 98 98 0 chr11 64041110 64041294 -86742259 + AluSq SINE Alu 1 202 -111 1968 110 3 3 chr11 64041787 64042089 -86741464 + AluSx SINE Alu 1 302 0 774 138 0 138 chr11 64042407 64042566 -86740987 + FLAM_C SINE Alu 1 137 -6 2085 109 23 13 chr11 64043259 64043563 -86739990 - AluSx SINE Alu -5 307 1 2112 102 10 3 chr11 64044520 64044813 -86738740 + AluSg SINE Alu 1 295 -15 2150 173 38 13 chr11 64045793 64046243 -86737310 + L1MB3 LINE L1 5684 6144 -39 974 79 8 0 chr11 64046269 64046395 -86737158 + AluSq/x SINE Alu 23 149 -164 25 31 0 0 chr11 64047838 64047870 -86735683 + GC_rich Low_complexity Low_complexity 1 32 0 1730 145 171 20 chr11 64048168 64048576 -86734977 + LTR12 LTR ERV1 1 714 0 628 136 0 0 chr11 64048815 64048918 -86734635 - LTR12 LTR ERV1 0 714 612 333 235 20 0 chr11 64048918 64049016 -86734537 - LTR30 LTR ERV1 -80 642 543 2495 23 7 13 chr11 64049043 64049346 -86734207 - AluY SINE Alu -10 301 1 1053 113 254 0 chr11 64049351 64049564 -86733989 - LTR12 LTR ERV1 -447 267 1 406 241 21 26 chr11 64050073 64050226 -86733327 - MIR SINE MIR -57 151 3 822 120 64 0 chr11 64051017 64051142 -86732411 + AluSq/x SINE Alu 1 133 -180 1898 114 25 0 chr11 64051142 64051422 -86732131 + AluSq SINE Alu 1 287 -26 2134 95 7 10 chr11 64051424 64051719 -86731834 + AluSq SINE Alu 1 294 -19 391 260 10 10 chr11 64051733 64051833 -86731720 - MIR SINE MIR -73 135 36 915 150 20 7 chr11 64053526 64053679 -86729874 + FRAM SINE Alu 4 158 -8 580 274 228 40 chr11 64053779 64054284 -86729269 - L2 LINE L2 -256 3057 2480 2225 107 0 0 chr11 64054678 64054976 -86728577 - AluY SINE Alu -13 298 1 454 266 68 5 chr11 64055505 64055712 -86727841 - L1ME LINE L1 -331 5790 5571 479 306 100 6 chr11 64055979 64056159 -86727394 + MIR3 SINE MIR 3 199 -9 1874 135 3 26 chr11 64056220 64056524 -86727029 - AluJb SINE Alu -15 297 1 2285 72 3 0 chr11 64056869 64057160 -86726393 - AluSg SINE Alu -17 293 2 2305 95 3 0 chr11 64057329 64057635 -86725918 - AluSp SINE Alu -6 307 1 329 372 78 31 chr11 64057705 64057963 -86725590 + L2 LINE L2 2248 2517 -797 1755 83 0 4 chr11 64057984 64058212 -86725341 + AluSg SINE Alu 2 228 -82 780 222 87 29 chr11 64058376 64058583 -86724970 + MER20 DNA MER1_type 1 219 0 199 297 114 32 chr11 64058646 64058865 -86724688 + L2 LINE L2 1880 2116 -1198 1768 127 46 11 chr11 64058914 64059198 -86724355 + AluJo SINE Alu 1 294 -18 1226 146 131 26 chr11 64059202 64059351 -86724202 + AluJb SINE Alu 1 133 -179 2327 93 0 0 chr11 64059351 64059661 -86723892 + AluY SINE Alu 1 310 -1 1226 146 131 26 chr11 64059661 64059778 -86723775 + AluJb SINE Alu 133 295 -17 249 397 80 0 chr11 64060059 64060210 -86723343 + L2 LINE L2 2487 2649 -665 1588 140 3 97 chr11 64062471 64062664 -86720889 - AluJo SINE Alu -9 303 152 2186 114 0 9 chr11 64062664 64062979 -86720574 - AluSx SINE Alu 0 312 1 1588 140 3 97 chr11 64062979 64063114 -86720439 - AluJo SINE Alu -160 152 6 1140 52 0 0 chr11 64066094 64066228 -86717325 + AluSc SINE Alu 1 134 -175 2399 55 0 3 chr11 64066228 64066519 -86717034 + AluY SINE Alu 1 290 -21 1563 140 29 38 chr11 64069737 64070052 -86713501 - AluSx SINE Alu 0 312 1 2153 122 0 3 chr11 64070101 64070412 -86713141 - AluSg SINE Alu 0 310 1 272 258 17 75 chr11 64070872 64070992 -86712561 + MIR3 SINE MIR 81 193 -15 216 0 0 0 chr11 64073360 64073384 -86710169 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 329 323 76 0 chr11 64074270 64074428 -86709125 + MIR3 SINE MIR 24 193 -15 1115 136 0 47 chr11 64074434 64074625 -86708928 - AluJo SINE Alu 0 312 131 536 313 181 0 chr11 64075467 64075748 -86707805 - L2 LINE L2 -17 3255 2924 182 322 203 23 chr11 64076196 64076373 -86707180 - MIR SINE MIR -7 255 47 211 348 123 7 chr11 64077792 64077930 -86705623 - MIR SINE MIR -108 154 1 1426 235 0 3 chr11 64078539 64078841 -86704712 - AluJo SINE Alu -11 301 1 570 182 136 0 chr11 64078856 64078966 -86704587 - AluJo SINE Alu -187 125 1 207 69 0 0 chr11 64078976 64079005 -86704548 + (TC)n Simple_repeat Simple_repeat 2 30 0 400 195 23 0 chr11 64079273 64079360 -86704193 - MIR3 SINE MIR -32 176 88 289 367 0 57 chr11 64079604 64079762 -86703791 + MIR SINE MIR 76 224 -38 256 191 44 0 chr11 64079778 64079846 -86703707 + MIR3 SINE MIR 1 71 -137 653 324 115 42 chr11 64079904 64080312 -86703241 - L2 LINE L2 -2 3311 2874 548 53 13 0 chr11 64080422 64080498 -86703055 + (TGGA)n Simple_repeat Simple_repeat 1 77 0 3725 116 81 82 chr11 64080498 64080891 -86702662 - MER39 LTR ERV1 0 707 314 2268 92 3 3 chr11 64080891 64081194 -86702359 - AluSx SINE Alu -9 303 1 3725 116 81 82 chr11 64081194 64081508 -86702045 - MER39 LTR ERV1 -393 314 1 301 274 168 9 chr11 64082412 64082525 -86701028 + L2 LINE L2 3141 3271 -1 193 347 35 42 chr11 64082859 64083003 -86700550 + L3 LINE CR1 1089 1231 -346 291 28 0 0 chr11 64084755 64084791 -86698762 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2109 111 0 0 chr11 64084793 64085082 -86698471 - AluSx SINE Alu -23 289 1 2293 70 0 10 chr11 64085159 64085457 -86698096 - AluY SINE Alu -16 295 1 347 242 0 55 chr11 64085460 64085551 -86698002 - MIR SINE MIR -53 209 124 1371 91 37 99 chr11 64085983 64086253 -86697300 - AluSx SINE Alu 0 312 58 534 284 85 28 chr11 64087607 64087783 -86695770 - MIR SINE MIR -48 214 29 577 296 69 14 chr11 64088572 64088788 -86694765 + MIR SINE MIR 33 260 -2 320 303 132 24 chr11 64088960 64089144 -86694409 + MIR SINE MIR 18 224 -38 390 270 0 10 chr11 64089681 64089781 -86693772 + MIR SINE MIR 53 151 -111 556 221 178 5 chr11 64090035 64090233 -86693320 + MIR SINE MIR 18 254 -8 280 316 79 0 chr11 64091496 64091572 -86691981 + MIR3 SINE MIR 110 191 -17 1016 225 81 0 chr11 64091706 64091928 -86691625 - MIR SINE MIR -9 253 14 182 321 0 0 chr11 64091994 64092047 -86691506 + L2 LINE L2 3212 3264 -8 309 325 50 8 chr11 64092585 64092705 -86690848 - MIR SINE MIR -32 230 106 237 290 21 21 chr11 64093121 64093214 -86690339 - L2 LINE L2 -213 3059 2967 494 220 105 54 chr11 64094287 64094457 -86689096 - MIR SINE MIR -65 143 17 297 130 0 0 chr11 64096297 64096343 -86687210 - L2 LINE L2 -5 3267 3222 404 209 162 0 chr11 64097713 64097818 -86685735 - L2 LINE L2 -1 3312 3191 1004 216 31 36 chr11 64097821 64097889 -86685664 + MER58A DNA MER1_type 2 69 -2351 2344 84 0 0 chr11 64097889 64098186 -86685367 + AluSg SINE Alu 1 297 -13 1004 216 31 36 chr11 64098186 64098339 -86685214 + MER58A DNA MER1_type 69 222 -2 492 237 174 64 chr11 64098497 64098716 -86684837 - MIR SINE MIR -12 250 8 466 228 40 0 chr11 64098922 64099023 -86684530 - MIR SINE MIR -70 192 88 2104 110 0 0 chr11 64099079 64099360 -86684193 + AluSq SINE Alu 1 281 -32 688 281 28 0 chr11 64100465 64100643 -86682910 + MIR SINE MIR 79 261 -1 606 252 21 7 chr11 64100728 64100871 -86682682 - MIR SINE MIR -107 155 11 258 324 19 9 chr11 64100913 64101018 -86682535 - L2 LINE L2 -213 3059 2954 376 309 72 39 chr11 64101123 64101304 -86682249 - MIR SINE MIR -43 219 33 767 124 8 0 chr11 64103401 64103522 -86680031 - MIR3 SINE MIR -25 183 62 318 277 31 23 chr11 64103904 64104034 -86679519 + Charlie8 DNA MER1_type 13 143 -2274 220 79 48 95 chr11 64106225 64106288 -86677265 + (CAGCC)n Simple_repeat Simple_repeat 4 63 0 193 382 76 14 chr11 64106328 64106472 -86677081 + MIR SINE MIR 31 183 -79 1776 146 56 0 chr11 64106565 64106852 -86676701 + AluJo SINE Alu 1 303 -9 528 273 73 18 chr11 64108368 64108550 -86675003 + MIR SINE MIR 13 201 -56 187 309 165 0 chr11 64109238 64109335 -86674218 + MIR SINE MIR 60 172 -90 549 326 91 5 chr11 64109823 64110044 -86673509 - MIR SINE MIR -15 247 8 448 321 115 27 chr11 64110435 64110731 -86672822 - L2 LINE L2 -6 3307 2986 733 317 229 12 chr11 64110792 64111568 -86671985 - L2 LINE L2 -554 2760 1816 201 283 20 113 chr11 64112838 64112954 -86670599 + MIR SINE MIR 99 202 -50 222 343 14 0 chr11 64113693 64113763 -86669790 - L2 LINE L2 -210 3062 2992 378 327 30 12 chr11 64115116 64115281 -86668272 - MIR3 SINE MIR -8 200 33 384 316 55 7 chr11 64115856 64116009 -86667544 + MIR3 SINE MIR 48 204 -4 221 270 60 60 chr11 64117414 64117514 -86666039 - MIR3 SINE MIR -37 171 83 2350 95 0 0 chr11 64118380 64118686 -86664867 - AluSq SINE Alu -7 306 1 464 125 0 11 chr11 64119505 64119593 -86663960 + (TCCC)n Simple_repeat Simple_repeat 3 89 0 2483 52 7 3 chr11 64119857 64120164 -86663389 + AluY SINE Alu 1 308 -3 22 0 0 0 chr11 64123862 64123884 -86659669 + GC_rich Low_complexity Low_complexity 1 22 0 287 224 231 7 chr11 64124027 64124170 -86659383 - MER5A DNA MER1_type -6 183 9 263 279 74 25 chr11 64124809 64124931 -86658622 - MIR3 SINE MIR -37 171 44 188 340 43 11 chr11 64125008 64125102 -86658451 - MIR3 SINE MIR -43 165 69 1899 118 0 38 chr11 64127229 64127539 -86656014 - AluJo SINE Alu 0 308 10 1119 279 165 9 chr11 64127575 64128259 -86655294 - L2 LINE L2 0 3313 2505 2101 87 21 0 chr11 64128352 64128638 -86654915 + AluSx SINE Alu 1 292 -20 756 168 202 0 chr11 64128651 64128824 -86654729 - MER3 DNA MER1_type 0 209 2 564 241 103 0 chr11 64128835 64128980 -86654573 + MIR SINE MIR 103 262 0 289 213 24 31 chr11 64129282 64129478 -86654075 + (CGGGG)n Simple_repeat Simple_repeat 1 194 0 244 288 102 0 chr11 64132697 64132815 -86650738 + MIR3 SINE MIR 30 159 -49 319 354 50 50 chr11 64134012 64134252 -86649301 + MIR SINE MIR 3 242 -20 181 340 48 29 chr11 64134564 64134667 -86648886 - MIR SINE MIR -60 148 44 658 271 11 23 chr11 64135486 64135663 -86647890 + L2 LINE L2 3138 3312 -1 2262 104 7 0 chr11 64136161 64136468 -86647085 + AluSq SINE Alu 1 309 -4 2344 79 0 0 chr11 64136747 64137039 -86646514 - AluSg SINE Alu -18 292 1 215 336 168 7 chr11 64137485 64137628 -86645925 - MIR SINE MIR -66 196 31 202 189 0 0 chr11 64138174 64138211 -86645342 + G-rich Low_complexity Low_complexity 3 39 0 259 275 92 73 chr11 64138418 64138527 -86645026 - L2 LINE L2 -2 3270 3160 * 541 264 32 13 chr11 64138519 64138674 -86644879 + MIR SINE MIR 84 241 -21 244 307 134 43 chr11 64138806 64139037 -86644516 - L2 LINE L2 -212 3060 2809 265 266 243 45 chr11 64139976 64140153 -86643400 + MIR SINE MIR 34 245 -17 2317 93 0 3 chr11 64140354 64140664 -86642889 + AluSx SINE Alu 1 309 -3 219 215 47 41 chr11 64140664 64140728 -86642825 + L2 LINE L2 3186 3294 -19 621 293 6 11 chr11 64141120 64141301 -86642252 - MIR SINE MIR -52 210 31 279 260 214 13 chr11 64142008 64142162 -86641391 - MIR SINE MIR -70 192 8 307 314 57 7 chr11 64143162 64143302 -86640251 - L2 LINE L2 -530 2784 2638 307 338 141 0 chr11 64143674 64143841 -86639712 + MIR SINE MIR 2 187 -63 286 303 28 109 chr11 64144046 64144257 -86639296 - MIR SINE MIR -6 256 63 1921 134 41 0 chr11 64144316 64144608 -86638945 + AluJb SINE Alu 1 304 -8 2212 128 0 0 chr11 64144608 64144920 -86638633 + AluSx SINE Alu 1 312 0 210 308 65 56 chr11 64147505 64147612 -86635941 - MIR SINE MIR -56 152 45 215 285 275 24 chr11 64147958 64148165 -86635388 - L2 LINE L2 0 3272 3014 190 279 49 0 chr11 64148835 64148896 -86634657 - MIR SINE MIR -115 93 30 2151 81 57 0 chr11 64149774 64150057 -86633496 - AluSg SINE Alu -11 299 1 2094 106 23 13 chr11 64151012 64151315 -86632238 + AluSx SINE Alu 1 306 -6 219 69 0 0 chr11 64151324 64151353 -86632200 + (TG)n Simple_repeat Simple_repeat 2 30 0 189 94 0 0 chr11 64152473 64152505 -86631048 + (TG)n Simple_repeat Simple_repeat 1 32 0 350 291 58 41 chr11 64153690 64153862 -86629691 + MIR3 SINE MIR 1 175 -33 205 205 12 60 chr11 64154229 64154312 -86629241 + G-rich Low_complexity Low_complexity 2 80 0 262 213 25 25 chr11 64157579 64157659 -86625894 + CT-rich Low_complexity Low_complexity 2 81 0 290 333 0 0 chr11 64158008 64158092 -86625461 + (CCCCAG)n Simple_repeat Simple_repeat 3 86 0 580 311 42 19 chr11 64158704 64158916 -86624637 - MIR SINE MIR -11 251 35 528 261 102 67 chr11 64159257 64159541 -86624012 - L2 LINE L2 -20 3252 2959 324 284 188 23 chr11 64159826 64160002 -86623551 + MER63A DNA MER1_type 2 206 -4 279 319 29 51 chr11 64161758 64161896 -86621657 - L2 LINE L2 0 3313 3179 419 277 164 17 chr11 64162121 64162298 -86621255 + MIR SINE MIR 37 239 -23 305 253 25 0 chr11 64164130 64164209 -86619344 + MER117 DNA MER1_type 82 162 -35 505 294 47 18 chr11 64166824 64166994 -86616559 - MIR3 SINE MIR -32 176 2 1925 112 16 48 chr11 64167709 64168022 -86615531 - AluSx SINE Alu -7 305 3 2015 96 7 33 chr11 64168028 64168330 -86615223 - AluSg SINE Alu -16 294 1 184 266 94 16 chr11 64168775 64168839 -86614714 - L2 LINE L2 -18 3254 3186 308 238 86 46 chr11 64169860 64170011 -86613542 + MIR SINE MIR 22 178 -84 330 364 86 0 chr11 64170203 64170354 -86613199 - MIR SINE MIR -51 211 48 212 172 35 17 chr11 64170381 64170439 -86613114 + (TTAA)n Simple_repeat Simple_repeat 3 61 0 889 211 0 0 chr11 64170727 64170893 -86612660 - FRAM SINE Alu 0 166 1 1553 91 0 41 chr11 64170950 64171170 -86612383 - AluSc SINE Alu -16 293 83 296 280 0 0 chr11 64171289 64171389 -86612164 - MER113 DNA MER1_type? -421 100 1 235 159 0 0 chr11 64171658 64171702 -86611851 - MLT2C2 LTR ERVL -2 462 419 1786 136 11 7 chr11 64174928 64175208 -86608345 - AluJo SINE Alu -7 305 25 238 98 73 0 chr11 64175220 64175261 -86608292 - AluJo SINE Alu -258 45 2 2241 104 3 3 chr11 64175602 64175911 -86607642 + AluSq SINE Alu 1 309 -4 601 191 0 50 chr11 64175913 64176054 -86607499 + AluJb SINE Alu 179 312 0 918 169 6 17 chr11 64176947 64177119 -86606434 - FRAM SINE Alu -7 169 1 1297 74 0 0 chr11 64178642 64178805 -86604748 - AluSg/x SINE Alu -13 299 137 784 207 0 0 chr11 64182478 64182613 -86600940 - FRAM SINE Alu -15 161 27 2707 16 0 6 chr11 64182798 64183110 -86600443 + AluYb8 SINE Alu 1 310 -8 2172 97 3 3 chr11 64183808 64184107 -86599446 - AluSp SINE Alu -14 299 1 478 242 33 52 chr11 64184640 64184793 -86598760 - L2 LINE L2 -1 3312 3163 2097 128 0 0 chr11 64184793 64185091 -86598462 + AluSx SINE Alu 1 298 -14 538 282 185 41 chr11 64185484 64185989 -86597564 + L2 LINE L2 2480 3057 -256 906 150 20 7 chr11 64186089 64186242 -86597311 - FRAM SINE Alu -8 158 4 380 260 10 10 chr11 64187935 64188035 -86595518 + MIR SINE MIR 36 135 -73 2109 95 7 10 chr11 64188049 64188344 -86595209 - AluSq SINE Alu -19 294 1 1866 114 25 0 chr11 64188346 64188626 -86594927 - AluSq SINE Alu -26 287 1 826 112 64 0 chr11 64188626 64188751 -86594802 - AluSq/x SINE Alu -180 133 1 401 212 22 14 chr11 64189584 64189695 -86593858 + MIR SINE MIR 42 151 -57 233 269 0 0 chr11 64190204 64190256 -86593297 + LTR30 LTR ERV1 1 52 -670 843 103 0 90 chr11 64190262 64190417 -86593136 + LTR12 LTR ERV1 127 267 -447 2461 30 7 16 chr11 64190422 64190726 -86592827 + AluY SINE Alu 1 301 -10 364 235 20 0 chr11 64190753 64190851 -86592702 + LTR30 LTR ERV1 543 642 -80 655 146 0 0 chr11 64190851 64190954 -86592599 + LTR12 LTR ERV1 612 714 0 488 144 67 0 chr11 64191193 64191283 -86592270 - LTR12 LTR ERV1 0 714 619 232 300 11 0 chr11 64191298 64191388 -86592165 - LTR30 LTR ERV1 -79 643 553 933 142 349 5 chr11 64191389 64191601 -86591952 - LTR12 LTR ERV1 -429 285 1 25 31 0 0 chr11 64191899 64191931 -86591622 + GC_rich Low_complexity Low_complexity 1 32 0 839 191 98 15 chr11 64194564 64194795 -86588758 - MIR SINE MIR -6 256 14 296 313 12 0 chr11 64194943 64195023 -86588530 - MIR3 SINE MIR -46 162 82 347 332 152 27 chr11 64195134 64195462 -86588091 + L1ME1 LINE L1 5562 5930 -236 2289 74 0 13 chr11 64195614 64195913 -86587640 - AluY SINE Alu -16 295 1 321 252 86 33 chr11 64195963 64196033 -86587520 + L1M2 LINE L1 5600 5665 -464 1549 137 111 7 chr11 64196033 64196304 -86587249 + AluSg SINE Alu 1 299 -11 321 252 86 33 chr11 64196304 64196385 -86587168 + L1M2 LINE L1 5665 5759 -370 1266 52 0 0 chr11 64196457 64196612 -86586941 - L1PA4 LINE L1 -2 6153 5999 1251 98 98 0 chr11 64196680 64196864 -86586689 + AluSx SINE Alu 1 202 -110 1947 106 3 3 chr11 64197357 64197659 -86585894 + AluSx SINE Alu 1 302 0 772 139 0 139 chr11 64197978 64198136 -86585417 + FLAM_C SINE Alu 2 137 -6 2300 81 0 0 chr11 64198711 64199008 -86584545 - AluY SINE Alu -14 297 1 495 266 68 5 chr11 64199537 64199744 -86583809 - L1ME LINE L1 -331 5790 5571 465 306 100 6 chr11 64200011 64200191 -86583362 + MIR3 SINE MIR 3 199 -9 1841 135 3 26 chr11 64200252 64200556 -86582997 - AluJb SINE Alu -15 297 1 2107 110 3 3 chr11 64200840 64201134 -86582419 + AluSx SINE Alu 2 296 -12 984 41 0 0 chr11 64201134 64201255 -86582298 + (GA)n Simple_repeat Simple_repeat 2 122 0 1167 82 0 0 chr11 64201637 64201784 -86581769 + AluSc SINE Alu 1 147 -162 378 153 0 0 chr11 64201784 64201843 -86581710 - AluS SINE Alu -244 59 1 263 313 60 60 chr11 64201843 64202060 -86581493 + L2 LINE L2 2324 2540 -774 2374 91 0 0 chr11 64202062 64202370 -86581183 + AluSx SINE Alu 1 308 -4 2087 58 0 4 chr11 64202370 64202628 -86580925 + AluY SINE Alu 33 290 -21 203 235 123 25 chr11 64208688 64208769 -86574784 - L2 LINE L2 -8 3264 3176 221 184 0 0 chr11 64209042 64209080 -86574473 + MIR SINE MIR 32 69 -139 180 322 172 0 chr11 64210281 64210368 -86573185 + MIR SINE MIR 83 184 -78 434 386 38 11 chr11 64210620 64210884 -86572669 - L2 LINE L2 -40 3273 3003 192 281 18 18 chr11 64211028 64211085 -86572468 + MIR SINE MIR 19 75 -187 201 254 0 15 chr11 64211694 64211761 -86571792 + CT-rich Low_complexity Low_complexity 1 66 0 1879 81 11 46 chr11 64212099 64212382 -86571171 - AluSx SINE Alu -15 297 25 369 298 70 70 chr11 64212402 64212791 -86570762 - L1MC4 LINE L1 0 8042 7654 1994 130 0 0 chr11 64212791 64213099 -86570454 - AluSx SINE Alu 0 308 1 1510 145 93 7 chr11 64213101 64213370 -86570183 - AluJo SINE Alu -20 292 1 369 298 70 70 chr11 64213370 64213459 -86570094 - L1MC4 LINE L1 -388 7654 7560 352 277 98 11 chr11 64213637 64213821 -86569732 + L1ME4a LINE L1 5922 6121 0 2144 97 3 0 chr11 64216013 64216302 -86567251 - AluSq SINE Alu -1 312 23 2280 176 38 13 chr11 64216328 64216778 -86566775 - L1MB3 LINE L1 -39 6144 5684 2044 119 7 3 chr11 64217757 64218051 -86565502 - AluSg SINE Alu -15 295 1 926 123 0 36 chr11 64218119 64218257 -86565296 + FLAM_A SINE Alu 1 133 0 1820 160 0 0 chr11 64219849 64220143 -86563410 + AluJo SINE Alu 1 294 -18 770 101 0 187 chr11 64220228 64220361 -86563192 + MER96B DNA MER1_type? 1 79 -338 2254 93 0 7 chr11 64220361 64220662 -86562891 - AluSp SINE Alu -14 299 1 770 101 0 187 chr11 64220662 64220747 -86562806 + MER96B DNA MER1_type? 79 178 -239 1830 120 78 0 chr11 64220990 64221274 -86562279 + AluSx SINE Alu 1 306 -6 2257 103 0 0 chr11 64221345 64221656 -86561897 + AluY SINE Alu 1 311 0 236 213 0 0 chr11 64221750 64221797 -86561756 + MER96B DNA MER1_type? 191 237 -180 214 243 122 0 chr11 64222005 64222079 -86561474 + L2 LINE L2 3201 3283 -30 2231 95 30 0 chr11 64222210 64222514 -86561039 + AluSq SINE Alu 1 313 0 1557 144 61 4 chr11 64222818 64223081 -86560472 - AluSx SINE Alu 0 312 35 210 229 21 0 chr11 64223092 64223140 -86560413 + CT-rich Low_complexity Low_complexity 1 49 0 2222 219 23 37 chr11 64223630 64223652 -86559901 - L1MB8 LINE L1 -12 6166 6145 2041 90 58 0 chr11 64223652 64223930 -86559623 - AluSx SINE Alu -18 294 1 2222 219 23 37 chr11 64223930 64224470 -86559083 - L1MB8 LINE L1 -33 6145 5612 252 333 0 13 chr11 64224590 64224665 -86558888 - MIR3 SINE MIR -37 171 98 276 374 11 84 chr11 64225497 64225595 -86557958 - MIR3 SINE MIR -27 181 102 2107 105 14 3 chr11 64225595 64225891 -86557662 - AluSg SINE Alu -11 299 1 276 374 11 84 chr11 64225891 64225982 -86557571 - MIR3 SINE MIR -106 102 6 1220 140 14 54 chr11 64226079 64226301 -86557252 + AluJo SINE Alu 86 298 -14 308 309 27 18 chr11 64226327 64226437 -86557116 - L1ME4a LINE L1 -89 6032 5922 1877 167 0 6 chr11 64226444 64226756 -86556797 + AluJo SINE Alu 1 310 -2 2144 100 0 0 chr11 64226936 64227245 -86556308 - AluSg SINE Alu 0 309 1 485 341 51 67 chr11 64228924 64228946 -86554607 - L1M4 LINE L1 -1629 4517 4496 2139 138 0 0 chr11 64228946 64229257 -86554296 - AluSx SINE Alu -1 311 1 485 341 51 67 chr11 64229257 64229569 -86553984 - L1M4 LINE L1 -1650 4496 4187 2147 92 0 7 chr11 64229569 64229899 -86553654 + AluY SINE Alu 1 311 0 485 341 51 67 chr11 64229899 64229935 -86553618 - L1M4 LINE L1 -1959 4187 4152 484 118 0 32 chr11 64229938 64230031 -86553522 + (TTCC)n Simple_repeat Simple_repeat 2 91 0 583 355 28 0 chr11 64230955 64231172 -86552381 - MIR SINE MIR -8 254 32 195 345 11 11 chr11 64232429 64232516 -86551037 + MIR3 SINE MIR 121 207 -1 191 293 0 15 chr11 64232916 64232984 -86550569 + MER5B DNA MER1_type 44 122 -67 211 205 0 0 chr11 64233297 64233336 -86550217 - L2 LINE L2 -3 3269 3231 * 218 239 130 11 chr11 64233332 64233424 -86550129 + MIR SINE MIR 25 127 -135 598 227 23 109 chr11 64234606 64234862 -86548691 - MLT1B LTR MaLR 0 390 157 1904 137 37 3 chr11 64234862 64235161 -86548392 - AluSq SINE Alu -4 309 1 2270 72 3 0 chr11 64235274 64235564 -86547989 - AluSg SINE Alu -18 292 2 2305 95 3 0 chr11 64235733 64236039 -86547514 - AluSp SINE Alu -6 307 1 313 372 78 31 chr11 64236109 64236367 -86547186 + L2 LINE L2 2248 2517 -797 1731 88 0 4 chr11 64236388 64236616 -86546937 + AluSg SINE Alu 2 228 -82 780 222 87 29 chr11 64236780 64236987 -86546566 + MER20 DNA MER1_type 1 219 0 185 301 114 32 chr11 64237050 64237269 -86546284 + L2 LINE L2 1880 2116 -1198 1791 123 46 11 chr11 64237318 64237602 -86545951 + AluJo SINE Alu 1 294 -18 1216 165 103 22 chr11 64237606 64237755 -86545798 + AluJb SINE Alu 1 137 -175 2364 85 0 0 chr11 64237755 64238062 -86545491 + AluY SINE Alu 1 307 -4 1216 165 103 22 chr11 64238062 64238185 -86545368 + AluJb SINE Alu 137 295 -17 249 397 80 0 chr11 64238466 64238617 -86544936 + L2 LINE L2 2487 2649 -665 1684 139 0 94 chr11 64240879 64241072 -86542481 - AluJo SINE Alu -8 304 153 2172 118 0 9 chr11 64241072 64241387 -86542166 - AluSx SINE Alu 0 312 1 1684 139 0 94 chr11 64241387 64241523 -86542030 - AluJo SINE Alu -159 153 6 2086 79 22 14 chr11 64244504 64244638 -86538915 + AluSc SINE Alu 1 133 -170 2355 60 7 7 chr11 64244638 64244939 -86538614 + AluY SINE Alu 1 301 -10 2086 79 22 14 chr11 64244939 64245105 -86538448 + AluSc SINE Alu 133 303 0 199 242 77 55 chr11 64245229 64245320 -86538233 - MIR SINE MIR -163 99 7 243 280 103 47 chr11 64248123 64248230 -86535323 - MIR3 SINE MIR -19 189 77 186 345 0 11 chr11 64248339 64248426 -86535127 - MIR SINE MIR -151 111 26 361 324 95 0 chr11 64250998 64251177 -86532376 + L2 LINE L2 2537 2732 -582 470 302 29 50 chr11 64251233 64251511 -86532042 + L2 LINE L2 2948 3219 -94 654 126 126 44 chr11 64251749 64251765 -86531788 + LTR47A LTR ERVL 303 316 -136 2024 95 6 60 chr11 64251765 64252081 -86531472 - AluSx SINE Alu -13 299 1 654 126 126 44 chr11 64252081 64252199 -86531354 + LTR47A LTR ERVL 316 448 -4 186 352 56 0 chr11 64253277 64253348 -86530205 - MIR SINE MIR -71 191 117 279 253 46 23 chr11 64255506 64255593 -86527960 - MIR3 SINE MIR -39 169 81 234 207 0 0 chr11 64255716 64255774 -86527779 + (TTCA)n Simple_repeat Simple_repeat 3 60 0 212 276 17 26 chr11 64256711 64256827 -86526726 + (CAGA)n Simple_repeat Simple_repeat 1 115 0 856 133 16 0 chr11 64257304 64257432 -86526121 - AluSx SINE Alu -17 293 164 710 115 0 0 chr11 64257453 64257549 -86526004 - AluSx SINE Alu -216 96 1 843 147 0 37 chr11 64257577 64257713 -86525840 + FLAM_C SINE Alu 1 131 -2 207 266 13 25 chr11 64257788 64257867 -86525686 + GA-rich Low_complexity Low_complexity 6 83 0 2015 131 6 16 chr11 64258646 64258959 -86524594 - AluJb SINE Alu -2 310 1 1665 176 4 4 chr11 64258977 64259255 -86524298 - AluJo SINE Alu -23 289 12 2000 147 0 0 chr11 64259268 64259575 -86523978 - AluSx SINE Alu -5 307 1 2155 159 27 8 chr11 64259577 64259947 -86523606 - L1MB3 LINE L1 -1 6182 5806 324 281 31 13 chr11 64260691 64260775 -86522778 - MIR SINE MIR -80 128 37 1921 89 8 4 chr11 64260775 64261033 -86522520 + L1PA8 LINE L1 5914 6172 0 324 281 31 13 chr11 64261033 64261059 -86522494 - MIR SINE MIR -171 37 13 381 200 75 42 chr11 64261546 64261666 -86521887 - MIR SINE MIR -65 143 20 424 345 59 5 chr11 64261794 64261997 -86521556 + MIR SINE MIR 33 246 -16 323 151 164 0 chr11 64262498 64262571 -86520982 - MIR SINE MIR -99 163 79 545 209 116 0 chr11 64263243 64263372 -86520181 + MIR SINE MIR 119 262 0 285 259 30 0 chr11 64263676 64263751 -86519802 - MIR SINE MIR -62 146 77 546 319 81 19 chr11 64263905 64264228 -86519325 + L2 LINE L2 2634 2976 -338 249 329 0 12 chr11 64264235 64264317 -86519236 + L2 LINE L2 3228 3308 -5 615 265 92 42 chr11 64264348 64264586 -86518967 + MIR SINE MIR 1 250 -12 385 298 0 18 chr11 64265314 64265428 -86518125 - MIR3 SINE MIR -49 159 48 2300 76 3 10 chr11 64265441 64265744 -86517809 - AluSp SINE Alu -12 301 1 2218 58 14 4 chr11 64265917 64266194 -86517359 + AluSg SINE Alu 1 280 -30 817 145 0 35 chr11 64266261 64266406 -86517147 + FLAM_C SINE Alu 1 140 -3 192 77 0 0 chr11 64266664 64266690 -86516863 + (T)n Simple_repeat Simple_repeat 1 26 0 239 127 36 18 chr11 64268010 64268065 -86515488 + (CCG)n Simple_repeat Simple_repeat 1 56 0 28 79 0 0 chr11 64268120 64268183 -86515370 + GC_rich Low_complexity Low_complexity 1 63 0 1690 130 23 43 chr11 64268796 64269095 -86514458 - AluJb SINE Alu -17 295 3 395 229 209 20 chr11 64269260 64269413 -86514140 - MER5A DNA MER1_type -3 186 5 568 194 23 6 chr11 64270080 64270226 -86513327 + L1MB2 LINE L1 5346 5488 -678 781 137 0 8 chr11 64270227 64270351 -86513202 + FLAM_C SINE Alu 21 143 0 1659 138 46 28 chr11 64270355 64270637 -86512916 + AluJb SINE Alu 2 288 -24 2732 167 67 32 chr11 64270639 64270918 -86512635 + L1MB2 LINE L1 5487 5755 -416 2049 108 29 10 chr11 64270918 64271224 -86512329 + AluSp SINE Alu 1 312 -1 2732 167 67 32 chr11 64271224 64271560 -86511993 + L1MB2 LINE L1 5755 6129 -42 1918 116 0 62 chr11 64271560 64271899 -86511654 + AluSx SINE Alu 1 312 0 2732 167 67 32 chr11 64271899 64271940 -86511613 + L1MB2 LINE L1 6129 6167 -4 337 255 43 11 chr11 64271950 64272044 -86511509 - MIR3 SINE MIR -31 177 81 595 260 159 0 chr11 64272341 64272549 -86511004 + MIR SINE MIR 3 243 -19 207 186 0 0 chr11 64274204 64274247 -86509306 + GA-rich Low_complexity Low_complexity 1 43 0 189 0 0 0 chr11 64276110 64276131 -86507422 + (CAG)n Simple_repeat Simple_repeat 2 22 0 499 222 296 5 chr11 64276525 64276861 -86506692 + LTR16A1 LTR ERVL 8 457 0 1180 253 95 14 chr11 64278081 64278498 -86505055 + MLT1E3 LTR MaLR 121 619 -5 184 254 42 14 chr11 64278498 64278569 -86504984 + MIR SINE MIR 68 140 -68 1976 120 23 19 chr11 64278580 64278888 -86504665 + AluSx SINE Alu 1 309 -3 2142 118 0 3 chr11 64280075 64280372 -86503181 - AluSx SINE Alu -16 296 1 362 273 132 14 chr11 64280428 64280648 -86502905 + L2 LINE L2 2804 3049 -223 255 61 0 0 chr11 64282096 64282129 -86501424 + (CAGA)n Simple_repeat Simple_repeat 3 35 0 226 298 11 43 chr11 64282387 64282481 -86501072 - MIR SINE MIR -62 146 56 354 250 14 0 chr11 64283356 64283462 -86500091 - MIR SINE MIR -63 145 73 290 238 28 24 chr11 64283541 64283625 -86499928 - MIR3 SINE MIR -53 155 71 224 225 42 0 chr11 64285454 64285525 -86498028 + MIR SINE MIR 58 131 -77 187 276 146 41 chr11 64285846 64285969 -86497584 + MIR3 SINE MIR 5 140 -68 1175 70 0 0 chr11 64286371 64286514 -86497039 + AluSq/x SINE Alu 1 143 -169 450 160 0 0 chr11 64286514 64286589 -86496964 + AluS SINE Alu 229 303 -7 443 235 10 0 chr11 64286616 64286718 -86496835 - MIR SINE MIR -63 145 43 277 289 22 0 chr11 64289127 64289217 -86494336 - MIR SINE MIR -68 140 49 188 233 0 47 chr11 64290254 64290265 -86493288 - MIR SINE MIR -3 259 219 189 188 0 0 chr11 64290265 64290297 -86493256 - L2 LINE L2 -18 3295 3264 313 211 0 0 chr11 64290724 64290781 -86492772 - MIR SINE MIR -82 126 70 191 121 30 0 chr11 64291321 64291354 -86492199 - MIR SINE MIR -64 144 111 189 281 0 73 chr11 64291677 64291759 -86491794 - L2 LINE L2 -2 3270 3195 2254 71 20 3 chr11 64292302 64292596 -86490957 + AluY SINE Alu 1 299 -12 2125 112 0 0 chr11 64292610 64292905 -86490648 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr11 64293377 64293398 -86490155 + GC_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr11 64294146 64294177 -86489376 + GC_rich Low_complexity Low_complexity 1 31 0 330 273 83 8 chr11 64295063 64295184 -86488369 - L2 LINE L2 0 3313 3184 371 351 53 0 chr11 64295230 64295381 -86488172 - MER91A DNA MER1_type -36 160 2 192 235 25 118 chr11 64295456 64295575 -86487978 + L2 LINE L2 3161 3268 -4 343 314 18 53 chr11 64296317 64296486 -86487067 + MIR3 SINE MIR 2 164 -44 2331 76 3 0 chr11 64297193 64297497 -86486056 + AluSp SINE Alu 5 309 -4 26 30 0 0 chr11 64297500 64297533 -86486020 + AT_rich Low_complexity Low_complexity 1 33 0 874 168 122 46 chr11 64297559 64297756 -86485797 - AluJo SINE Alu -1 311 100 382 265 128 0 chr11 64297800 64297917 -86485636 + MIR SINE MIR 12 143 -119 552 205 30 17 chr11 64298305 64298454 -86485099 + MIR SINE MIR 46 203 -57 1904 85 18 94 chr11 64298454 64298785 -86484768 + AluY SINE Alu 1 306 -5 2284 90 3 6 chr11 64298786 64299098 -86484455 + AluSp SINE Alu 1 311 -2 265 242 220 0 chr11 64299777 64299868 -86483685 - MIR3 SINE MIR -53 155 45 321 343 30 0 chr11 64300668 64300802 -86482751 - MIR SINE MIR -55 153 16 426 284 50 73 chr11 64301592 64301824 -86481729 - MIR SINE MIR -42 220 1 2076 118 0 7 chr11 64301897 64302194 -86481359 + AluSx SINE Alu 1 295 -17 331 389 24 5 chr11 64302195 64302520 -86481033 - L2 LINE L2 -323 2990 2661 302 273 46 103 chr11 64302587 64302781 -86480772 + L1M4 LINE L1 5118 5300 -846 300 278 174 0 chr11 64302804 64302919 -86480634 - L2 LINE L2 -1 3312 3178 1839 153 32 117 chr11 64302953 64303112 -86480441 + MSTB1 LTR MaLR 1 172 -260 2065 100 0 4 chr11 64303112 64303392 -86480161 - AluSg SINE Alu -20 290 12 1839 153 32 117 chr11 64303392 64303453 -86480100 + MSTB1 LTR MaLR 172 237 -195 1644 124 29 0 chr11 64303453 64303694 -86479859 - AluSq SINE Alu -65 248 1 1839 153 32 117 chr11 64303694 64303944 -86479609 + MSTB1 LTR MaLR 237 432 0 268 329 48 53 chr11 64304050 64304142 -86479411 - L2 LINE L2 -431 2883 2792 2268 138 123 5 chr11 64304142 64304525 -86479028 + MSTA LTR MaLR 1 428 0 268 329 48 53 chr11 64304525 64304639 -86478914 - L2 LINE L2 -522 2792 2678 498 296 34 52 chr11 64305279 64305603 -86477950 + L1MEd LINE L1 561 878 -5241 1248 124 5 0 chr11 64305607 64305809 -86477744 - L1MA4 LINE L1 -2 6298 6096 1700 127 3 35 chr11 64305833 64306117 -86477436 + AluSx SINE Alu 29 303 -9 2097 98 3 10 chr11 64306172 64306467 -86477086 - AluSc SINE Alu -16 293 1 1837 154 6 16 chr11 64306467 64306778 -86476775 - AluSq SINE Alu -4 309 1 722 141 74 7 chr11 64306844 64306993 -86476560 + L1MB3 LINE L1 6014 6172 -11 1943 116 7 0 chr11 64307089 64307366 -86476187 + AluJb SINE Alu 11 289 -23 371 286 12 71 chr11 64307379 64307634 -86475919 + L1MEd LINE L1 2338 2577 -3552 * 1932 237 147 83 chr11 64307630 64308552 -86475001 + HAL1 LINE L1 278 1271 -1236 2422 70 0 0 chr11 64308552 64308854 -86474699 + AluY SINE Alu 1 302 -9 1932 237 147 83 chr11 64308854 64308939 -86474614 + HAL1 LINE L1 1271 1349 -1158 314 139 0 0 chr11 64308942 64308985 -86474568 + Alu SINE Alu 2 44 -258 422 233 60 17 chr11 64309068 64309184 -86474369 - L2 LINE L2 -1 3312 3192 407 275 78 56 chr11 64309258 64309352 -86474201 - L1ME3A LINE L1 -244 5926 5827 2190 107 3 0 chr11 64309352 64309651 -86473902 - AluSg SINE Alu -10 300 1 407 275 78 56 chr11 64309651 64309698 -86473855 - L1ME3A LINE L1 -343 5827 5782 1534 233 120 20 chr11 64309700 64310159 -86473394 + MLT1D LTR MaLR 1 505 0 885 152 19 0 chr11 64310159 64310317 -86473236 + MLT1D-int LTR MaLR 1 161 -1210 1359 167 0 0 chr11 64310339 64310555 -86472998 + AluSg/x SINE Alu 93 308 -2 796 250 0 0 chr11 64310563 64310743 -86472810 + MLT1D-int LTR MaLR 280 459 -912 820 212 0 0 chr11 64310744 64310890 -86472663 - FRAM SINE Alu -30 146 1 363 136 0 0 chr11 64310902 64310961 -86472592 + (CA)n Simple_repeat Simple_repeat 2 60 0 352 290 0 32 chr11 64310963 64311056 -86472497 - L1MC4 LINE L1 -1339 6703 6614 338 282 27 27 chr11 64311041 64311151 -86472402 + L1MCa LINE L1 1996 2105 -4321 * 3974 206 17 77 chr11 64311156 64311538 -86472015 + L1MC/D LINE L1 571 974 -5568 216 0 0 0 chr11 64311538 64311562 -86471991 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3974 206 17 77 chr11 64311562 64311751 -86471802 + L1MC/D LINE L1 974 1173 -5369 2080 117 23 0 chr11 64311751 64312051 -86471502 + AluSg SINE Alu 1 307 -3 3974 206 17 77 chr11 64312051 64312128 -86471425 + L1MC/D LINE L1 1173 1253 -5289 2028 134 0 0 chr11 64312128 64312419 -86471134 - AluSx SINE Alu -21 291 1 3974 206 17 77 chr11 64312419 64312982 -86470571 + L1MC/D LINE L1 1253 1711 -4831 633 140 0 0 chr11 64313005 64313098 -86470455 - AluSx SINE Alu -11 299 207 951 157 0 0 chr11 64313099 64313246 -86470307 - AluSx SINE Alu -165 147 1 2233 188 116 89 chr11 64313248 64313924 -86469629 + L1MC/D LINE L1 1720 2431 -4215 1401 199 29 7 chr11 64313924 64314205 -86469348 - AluJo SINE Alu -25 287 1 2233 188 116 89 chr11 64314205 64314498 -86469055 + L1MC/D LINE L1 2431 2715 -3931 763 89 0 0 chr11 64314498 64314599 -86468954 + U6 snRNA snRNA 1 101 -6 3028 194 75 157 chr11 64314603 64314720 -86468833 + L1MC/D LINE L1 2683 2808 -3836 1139 186 151 16 chr11 64314720 64314837 -86468716 + AluJo SINE Alu 1 101 -201 183 42 0 0 chr11 64314837 64314861 -86468692 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1139 186 151 16 chr11 64314861 64314995 -86468558 + AluJo SINE Alu 101 286 -16 3028 194 75 157 chr11 64314995 64315248 -86468305 + L1MC/D LINE L1 2808 3080 -3564 2033 138 3 0 chr11 64315248 64315572 -86467981 + AluSx SINE Alu 1 325 0 3028 194 75 157 chr11 64315572 64316284 -86467269 + L1MC/D LINE L1 3080 3849 -2795 1827 162 0 23 chr11 64316284 64316592 -86466961 + AluJo SINE Alu 12 312 0 946 163 0 6 chr11 64316598 64316758 -86466795 + FRAM SINE Alu 1 155 -21 2358 81 3 3 chr11 64316764 64317072 -86466481 + AluSp SINE Alu 1 308 -5 3028 194 75 157 chr11 64317072 64317110 -86466443 + L1MC/D LINE L1 3859 3899 -2745 1711 186 3 13 chr11 64317110 64317245 -86466308 + AluJo SINE Alu 1 136 -176 2074 117 10 0 chr11 64317245 64317543 -86466010 + AluSx SINE Alu 1 301 -11 1711 186 3 13 chr11 64317543 64317719 -86465834 + AluJo SINE Alu 136 309 -3 3028 194 75 157 chr11 64317719 64318075 -86465478 + L1MC/D LINE L1 3899 4183 -2461 2295 88 0 0 chr11 64318075 64318371 -86465182 + AluY SINE Alu 1 296 -15 3028 194 75 157 chr11 64318371 64318500 -86465053 + L1MC/D LINE L1 4183 4321 -2323 2050 85 0 0 chr11 64318507 64318533 -86465020 + SVA Other Other 1114 1139 -266 2095 127 0 0 chr11 64318533 64318833 -86464720 + AluSq SINE Alu 1 300 -13 2050 85 0 0 chr11 64318833 64319098 -86464455 + SVA Other Other 1138 1405 0 433 218 0 0 chr11 64319099 64319177 -86464376 - AluJ/FLAM SINE Alu -233 79 2 4313 211 45 14 chr11 64319182 64320427 -86463126 + L1MC/D LINE L1 4712 5995 -744 307 75 0 0 chr11 64320484 64320524 -86463029 + L1ME4a LINE L1 5962 6001 -120 933 57 0 21 chr11 64320770 64320910 -86462643 + (TTCC)n Simple_repeat Simple_repeat 3 139 0 822 207 0 47 chr11 64320912 64321081 -86462472 - AluJo SINE Alu -28 284 124 259 225 25 12 chr11 64321236 64321316 -86462237 - MER53 DNA DNA -95 94 14 2009 126 0 13 chr11 64321331 64321633 -86461920 - AluSq SINE Alu -15 298 1 265 268 49 0 chr11 64321863 64321945 -86461608 + MIR SINE MIR 159 244 -18 389 203 14 0 chr11 64322106 64322180 -86461373 + MIR3 SINE MIR 85 159 -49 792 98 0 2 chr11 64323134 64323380 -86460173 + AluSx SINE Alu 1 295 -15 430 271 79 14 chr11 64323479 64323619 -86459934 + MIR SINE MIR 1 149 -113 317 349 122 18 chr11 64323651 64323880 -86459673 + L2 LINE L2 2926 3178 -94 1462 187 40 7 chr11 64324596 64324874 -86458679 + AluJb SINE Alu 1 287 -25 321 198 24 0 chr11 64324880 64325006 -86458547 + (TA)n Simple_repeat Simple_repeat 1 129 0 438 275 18 0 chr11 64325111 64325220 -86458333 + MER5B DNA MER1_type 26 136 -42 215 173 99 0 chr11 64325261 64325314 -86458239 - MIR SINE MIR -98 164 105 1187 59 0 148 chr11 64325516 64325719 -86457834 + L1PA8 LINE L1 5992 6164 -8 271 301 102 28 chr11 64325842 64326018 -86457535 + MER5A DNA MER1_type 1 189 0 387 248 35 28 chr11 64326439 64326580 -86456973 - MIR3 SINE MIR -56 152 11 339 250 52 0 chr11 64327195 64327291 -86456262 - L2 LINE L2 -330 2942 2842 531 290 112 23 chr11 64327347 64327606 -86455947 - L2 LINE L2 -107 3206 2925 214 348 33 0 chr11 64327609 64327701 -86455852 - L2 LINE L2 -7 3265 3171 234 0 0 0 chr11 64327832 64327858 -86455695 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2297 82 4 7 chr11 64327860 64328141 -86455412 - AluSq SINE Alu -31 282 3 226 303 34 0 chr11 64328255 64328344 -86455209 - MIR3 SINE MIR -20 188 97 188 65 0 32 chr11 64328735 64328766 -86454787 + (CTGGGG)n Simple_repeat Simple_repeat 1 30 0 261 0 0 0 chr11 64328938 64328967 -86454586 + (GA)n Simple_repeat Simple_repeat 2 30 0 727 183 0 8 chr11 64328967 64329079 -86454474 - FLAM_C SINE Alu -189 113 1 2272 111 0 35 chr11 64329092 64329408 -86454145 - AluSx SINE Alu -7 305 1 29 0 0 0 chr11 64329418 64329447 -86454106 + AT_rich Low_complexity Low_complexity 1 29 0 1615 182 49 3 chr11 64329457 64329743 -86453810 + AluJb SINE Alu 1 299 -13 1651 171 13 42 chr11 64329925 64330062 -86453491 + AluJo SINE Alu 1 140 -172 2155 129 3 0 chr11 64330062 64330364 -86453189 + AluSg SINE Alu 1 303 -7 1651 171 13 42 chr11 64330364 64330566 -86452987 + AluJo SINE Alu 140 312 0 1666 140 47 19 chr11 64330765 64331086 -86452467 - L1MC1 LINE L1 -9 6324 5995 1603 156 91 4 chr11 64331105 64331381 -86452172 - AluJo SINE Alu -12 300 1 189 0 0 0 chr11 64331716 64331737 -86451816 + (CCCCCA)n Simple_repeat Simple_repeat 1 21 0 1757 149 3 20 chr11 64333001 64333302 -86450251 + AluJo SINE Alu 1 296 -16 361 219 0 0 chr11 64333841 64333914 -86449639 - MIR SINE MIR -116 146 74 2296 79 11 0 chr11 64334326 64334644 -86448909 + AluSx SINE Alu 1 321 0 216 0 0 0 chr11 64334771 64334795 -86448758 + (TCC)n Simple_repeat Simple_repeat 1 24 0 1297 112 6 0 chr11 64335060 64335238 -86448315 + AluSp SINE Alu 131 309 -4 387 0 0 0 chr11 64335526 64335569 -86447984 + (CA)n Simple_repeat Simple_repeat 2 44 0 268 287 12 23 chr11 64336353 64336464 -86447089 - MIR SINE MIR -55 153 90 479 265 105 11 chr11 64336780 64336961 -86446592 - MIR SINE MIR -24 238 41 2058 120 11 0 chr11 64337016 64337292 -86446261 - AluSx SINE Alu -15 297 19 2412 85 7 3 chr11 64337653 64337958 -86445595 - AluSq SINE Alu -7 306 1 1403 135 59 4 chr11 64340412 64340649 -86442904 + AluSx SINE Alu 49 298 -14 23 0 0 0 chr11 64342609 64342632 -86440921 + AT_rich Low_complexity Low_complexity 1 23 0 2224 71 4 7 chr11 64342637 64342917 -86440636 + AluSg SINE Alu 2 280 -30 29 60 0 0 chr11 64343880 64343930 -86439623 + GC_rich Low_complexity Low_complexity 1 50 0 199 122 41 0 chr11 64344086 64344135 -86439418 + (CGG)n Simple_repeat Simple_repeat 2 52 0 326 312 16 74 chr11 64345650 64345839 -86437714 - L2 LINE L2 -195 3077 2900 2400 89 6 13 chr11 64345865 64346179 -86437374 + AluSx SINE Alu 1 312 0 795 286 95 86 chr11 64346360 64347010 -86436543 + L1M4 LINE L1 4296 4951 -1195 2389 89 0 0 chr11 64347336 64347628 -86435925 - AluSq SINE Alu -21 292 1 306 282 109 0 chr11 64347663 64347773 -86435780 + L2 LINE L2 3151 3272 0 324 0 0 0 chr11 64348799 64348835 -86434718 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 268 240 139 47 chr11 64349080 64349209 -86434344 - MIR3 SINE MIR -1 207 67 1566 136 121 18 chr11 64350900 64351172 -86432381 + AluJo SINE Alu 1 300 -12 786 163 0 15 chr11 64351175 64351310 -86432243 + FLAM_A SINE Alu 1 133 0 1966 152 0 25 chr11 64351312 64351628 -86431925 + AluJo SINE Alu 1 308 -4 1745 149 53 0 chr11 64352172 64352453 -86431100 - AluSx SINE Alu -16 296 1 315 297 27 36 chr11 64352949 64353060 -86430493 - MIR SINE MIR -116 146 37 1842 121 8 102 chr11 64354479 64354851 -86428702 + MER1B DNA MER1_type 1 337 0 1753 171 16 19 chr11 64354956 64355265 -86428288 - AluJo SINE Alu -4 308 1 368 281 7 58 chr11 64355307 64355446 -86428107 - MIR3 SINE MIR -73 135 4 305 197 0 0 chr11 64356528 64356606 -86426947 - MIR SINE MIR -51 157 79 2226 100 17 0 chr11 64356853 64357152 -86426401 + AluSq SINE Alu 1 304 -9 462 301 146 8 chr11 64357450 64357689 -86425864 - MLT1K LTR MaLR -3 585 314 3299 133 18 68 chr11 64358109 64358255 -86425298 - LTR36 LTR ERV1 0 611 459 2264 101 6 22 chr11 64358255 64358573 -86424980 + AluSp SINE Alu 1 313 0 3299 133 18 68 chr11 64358573 64358586 -86424967 - LTR36 LTR ERV1 -152 459 447 2233 106 7 0 chr11 64358586 64358879 -86424674 + AluSx SINE Alu 1 295 -17 3299 133 18 68 chr11 64358879 64359335 -86424218 - LTR36 LTR ERV1 -164 447 26 2579 74 0 0 chr11 64359360 64359669 -86423884 - AluY SINE Alu -2 309 1 2318 103 3 0 chr11 64359669 64359970 -86423583 - AluSq SINE Alu -10 303 1 280 100 0 0 chr11 64359972 64360012 -86423541 - LTR36 LTR ERV1 -571 40 1 280 270 71 32 chr11 64360071 64360197 -86423356 + ORSL DNA AcHobo 142 272 -3 477 256 23 8 chr11 64360238 64360367 -86423186 + MIR SINE MIR 20 150 -112 2053 138 3 22 chr11 64360813 64360993 -86422560 - AluJb SINE Alu -2 310 137 2038 80 102 0 chr11 64360993 64361267 -86422286 - AluSp SINE Alu -11 302 1 2053 138 3 22 chr11 64361267 64361397 -86422156 - AluJb SINE Alu -175 137 6 3903 179 15 8 chr11 64361401 64362042 -86421511 - L1MB1 LINE L1 -36 6132 5484 2208 88 3 70 chr11 64362042 64362371 -86421182 - AluSq SINE Alu -6 307 1 3903 179 15 8 chr11 64362371 64362481 -86421072 - L1MB1 LINE L1 -684 5484 5376 22415 142 27 30 chr11 64362520 64364894 -86418659 + L1PA10 LINE L1 926 3306 -2862 2426 89 3 0 chr11 64364894 64365198 -86418355 + AluSc SINE Alu 1 305 -4 22415 142 27 30 chr11 64365198 64368074 -86415479 + L1PA10 LINE L1 3306 6148 -20 180 0 0 0 chr11 64368074 64368094 -86415459 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 22415 142 27 30 chr11 64368094 64368113 -86415440 + L1PA10 LINE L1 6148 6166 -2 2093 96 32 11 chr11 64368182 64368463 -86415090 + AluSg SINE Alu 5 291 -19 2625 71 0 0 chr11 64368511 64368822 -86414731 + AluY SINE Alu 1 311 0 2324 82 24 0 chr11 64368940 64369231 -86414322 + AluY SINE Alu 1 298 -13 257 244 24 0 chr11 64369545 64369627 -86413926 + L1MC4 LINE L1 6615 6698 -1344 387 299 88 28 chr11 64370154 64370371 -86413182 + L2 LINE L2 638 867 -2447 1579 93 15 0 chr11 64370768 64370972 -86412581 - AluY SINE Alu -18 293 87 206 376 60 0 chr11 64371160 64371277 -86412276 - MIR SINE MIR -102 160 37 2244 114 0 7 chr11 64371410 64371718 -86411835 - AluSq SINE Alu -7 306 1 2023 103 30 33 chr11 64372610 64372912 -86410641 - AluSx SINE Alu -11 301 1 391 305 51 0 chr11 64373101 64373219 -86410334 - MIR SINE MIR -89 173 50 231 268 101 43 chr11 64373270 64373408 -86410145 + L2 LINE L2 2224 2369 -945 2005 86 119 25 chr11 64373566 64373737 -86409816 + L1MA3 LINE L1 5910 6064 -241 2411 55 3 52 chr11 64373737 64374046 -86409507 - AluY SINE Alu -17 294 1 2005 86 119 25 chr11 64374046 64374236 -86409317 + L1MA3 LINE L1 6064 6305 0 1848 146 3 20 chr11 64374319 64374621 -86408932 + AluSx SINE Alu 1 297 -15 609 186 11 27 chr11 64374621 64374804 -86408749 + GA-rich Low_complexity Low_complexity 1 180 0 268 189 63 32 chr11 64374976 64375069 -86408484 - MLT1H LTR MaLR -4 622 460 206 128 26 0 chr11 64375106 64375145 -86408408 + CT-rich Low_complexity Low_complexity 1 40 0 1533 214 3 34 chr11 64375153 64375475 -86408078 - AluJb SINE Alu 0 312 1 243 227 0 80 chr11 64375604 64375692 -86407861 - MLT1H LTR MaLR -355 194 114 2031 128 47 0 chr11 64376565 64376862 -86406691 + AluSx SINE Alu 1 311 -1 1788 267 91 94 chr11 64376952 64377239 -86406314 - L1MC4a LINE L1 -831 6977 6691 240 88 368 0 chr11 64377239 64377296 -86406257 - MADE1 DNA Mariner 0 80 3 1788 267 91 94 chr11 64377296 64377480 -86406073 - L1MC4a LINE L1 -1117 6691 6508 2474 60 0 17 chr11 64377480 64377781 -86405772 - AluY SINE Alu -15 296 1 1788 267 91 94 chr11 64377781 64378238 -86405315 - L1MC4a LINE L1 -1300 6508 6051 1579 163 35 49 chr11 64378238 64378552 -86405001 + AluJo SINE Alu 1 310 0 1788 267 91 94 chr11 64378552 64378636 -86404917 - L1MC4a LINE L1 -1757 6051 5968 2187 108 3 7 chr11 64378636 64378933 -86404620 - AluSc SINE Alu -13 296 1 1788 267 91 94 chr11 64378933 64379589 -86403964 - L1MC4a LINE L1 -1840 5968 5254 423 270 47 113 chr11 64379590 64379864 -86403689 - L1MC4a LINE L1 -894 5252 4997 2197 108 0 0 chr11 64379865 64380144 -86403409 + AluSx SINE Alu 2 280 -32 225 0 0 0 chr11 64380146 64380171 -86403382 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2268 91 0 3 chr11 64380291 64380623 -86402930 - AluSg SINE Alu 0 331 1 2427 89 0 0 chr11 64380627 64380920 -86402633 - AluSx SINE Alu -15 297 5 30 45 0 0 chr11 64381537 64381581 -86401972 + AT_rich Low_complexity Low_complexity 1 44 0 2529 64 0 3 chr11 64381705 64382002 -86401551 + AluY SINE Alu 1 296 -15 742 104 149 0 chr11 64382113 64382247 -86401306 + MER41A LTR ERV1 401 554 0 1238 123 15 116 chr11 64382247 64382515 -86401038 - MER21-int LTR ERV1 -3533 658 418 770 159 26 2 chr11 64382515 64382676 -86400877 - MER49 LTR ERV1 -442 168 1 2303 97 3 0 chr11 64382690 64382990 -86400563 + AluSp SINE Alu 1 301 -12 756 135 40 16 chr11 64383006 64383132 -86400421 + MER4B-int LTR ERV1 3285 3413 -3345 1459 158 132 7 chr11 64383291 64383564 -86399989 + AluJo SINE Alu 1 307 -5 8223 60 5 7 chr11 64383588 64384597 -86398956 + LTR13 LTR ERVK 1 1007 0 988 160 41 0 chr11 64384672 64384841 -86398712 - LTR47A LTR ERVL 0 452 277 1764 172 0 10 chr11 64384843 64385134 -86398419 - AluJo SINE Alu -2 310 23 1139 65 0 182 chr11 64385464 64385678 -86397875 - AluSp SINE Alu -4 309 135 183 370 39 59 chr11 64385768 64385971 -86397582 - L2 LINE L2 -8 3264 3066 2239 85 67 0 chr11 64386108 64386391 -86397162 + AluSx SINE Alu 1 302 -10 2273 125 0 0 chr11 64387100 64387395 -86396158 - AluSx SINE Alu -14 298 4 800 263 110 4 chr11 64387446 64387682 -86395871 + MIR SINE MIR 1 261 -1 2259 122 3 0 chr11 64387705 64388008 -86395545 + AluSq SINE Alu 1 304 -9 349 289 53 43 chr11 64388552 64388841 -86394712 + L1MC/D LINE L1 5055 5377 -803 1970 90 11 14 chr11 64388841 64389119 -86394434 + AluY SINE Alu 24 300 -11 349 289 53 43 chr11 64389119 64389287 -86394266 + L1MC/D LINE L1 5377 5542 -638 213 39 0 0 chr11 64389410 64389436 -86394117 + (CA)n Simple_repeat Simple_repeat 2 27 0 3270 193 99 26 chr11 64389505 64390309 -86393244 + MER21B LTR ERV1 1 863 0 4534 95 65 0 chr11 64390543 64391187 -86392366 + L1PA11 LINE L1 5488 6173 -1 1246 134 0 0 chr11 64391439 64391610 -86391943 - AluSg/x SINE Alu -22 290 120 2204 128 3 3 chr11 64391610 64391922 -86391631 - AluSq SINE Alu -1 312 1 1249 138 102 121 chr11 64391926 64392231 -86391322 - AluSx SINE Alu -13 299 1 226 281 125 62 chr11 64392357 64392485 -86391068 + L2 LINE L2 3136 3271 -1 562 144 33 178 chr11 64393363 64393469 -86390084 + MER5B DNA MER1_type 17 88 -90 2077 156 0 0 chr11 64393469 64393776 -86389777 + AluSx SINE Alu 2 308 -4 562 144 33 178 chr11 64393776 64393849 -86389704 + MER5B DNA MER1_type 88 170 -8 931 139 52 217 chr11 64394039 64394418 -86389135 - MER51C LTR ERV1 0 640 329 1200 145 16 73 chr11 64395042 64395290 -86388263 + LTR45 LTR ERV1 1 234 -291 2086 103 18 0 chr11 64395291 64395605 -86387948 + AluSx SINE Alu 1 319 0 723 163 7 64 chr11 64395605 64395746 -86387807 - MER4E LTR ERV1 -293 486 354 797 128 15 15 chr11 64395759 64395892 -86387661 - MER4B LTR ERV1 -477 133 1 2404 91 3 0 chr11 64395950 64396248 -86387305 - AluSx SINE Alu -13 299 1 229 174 0 0 chr11 64396264 64396310 -86387243 - L1MB3 LINE L1 0 6183 6138 2421 68 7 3 chr11 64396313 64396609 -86386944 - AluSp SINE Alu -15 298 2 415 268 22 51 chr11 64396610 64396748 -86386805 - MIR SINE MIR -112 150 17 358 280 103 14 chr11 64396729 64396867 -86386686 - MIR3 SINE MIR -7 201 50 * 2241 81 7 32 chr11 64396913 64397257 -86386296 + AluSp SINE Alu 1 313 0 450 189 11 22 chr11 64397404 64397494 -86386059 + MER21B LTR ERV1 1 89 -774 1730 153 3 17 chr11 64397606 64397894 -86385659 + AluJb SINE Alu 1 284 -28 536 190 0 0 chr11 64397920 64397999 -86385554 + AluS SINE Alu 2 80 -232 2484 66 7 3 chr11 64398028 64398331 -86385222 - AluSp SINE Alu -9 304 1 334 169 157 12 chr11 64398332 64398415 -86385138 - LTR8 LTR ERV1 -156 535 441 2963 181 9 28 chr11 64398707 64399355 -86384198 - L1MB1 LINE L1 -39 6129 5494 2255 98 3 29 chr11 64399360 64399675 -86383878 - AluSq SINE Alu -6 307 1 180 370 39 59 chr11 64399812 64400015 -86383538 + L2 LINE L2 3066 3264 -8 1235 71 0 116 chr11 64400105 64400303 -86383250 + AluSp SINE Alu 135 309 -4 1733 175 0 10 chr11 64400633 64400924 -86382629 + AluJo SINE Alu 23 310 -2 976 166 41 0 chr11 64400926 64401095 -86382458 + LTR47A LTR ERVL 277 452 0 8192 60 5 8 chr11 64401170 64402180 -86381373 - LTR13 LTR ERVK 0 1007 1 1388 153 153 8 chr11 64402204 64402472 -86381081 - AluJo SINE Alu -5 307 1 756 135 40 16 chr11 64402631 64402757 -86380796 - MER4B-int LTR ERV1 -3345 3413 3285 2303 97 3 0 chr11 64402773 64403073 -86380480 - AluSp SINE Alu -12 301 1 770 159 26 2 chr11 64403087 64403248 -86380305 + MER49 LTR ERV1 1 168 -442 1238 123 15 116 chr11 64403248 64403516 -86380037 + MER21-int LTR ERV1 418 658 -3533 3105 132 65 47 chr11 64403516 64403690 -86379863 - MER41B LTR ERV1 0 635 466 2089 100 4 0 chr11 64403690 64403961 -86379592 - AluY SINE Alu -39 272 1 3105 132 65 47 chr11 64403961 64404400 -86379153 - MER41B LTR ERV1 -169 466 11 989 141 118 18 chr11 64404401 64404571 -86378982 - AluJo SINE Alu -125 187 1 228 206 15 59 chr11 64405319 64405387 -86378166 - MIR SINE MIR -117 91 27 2171 142 0 0 chr11 64406776 64407078 -86376475 + AluSx SINE Alu 1 302 -10 356 187 55 22 chr11 64407107 64407198 -86376355 - MLT1L LTR MaLR -207 408 315 1107 152 0 27 chr11 64407674 64407690 -86375863 - AluJo/FRAM SINE Alu 0 312 297 2248 96 16 19 chr11 64407690 64408034 -86375519 - AluSq SINE Alu 0 313 1 1107 152 0 27 chr11 64408034 64408201 -86375352 - AluJo/FRAM SINE Alu -15 297 134 2559 72 0 0 chr11 64408201 64408505 -86375048 - AluY SINE Alu -7 304 1 2242 98 17 3 chr11 64408512 64408807 -86374746 - AluSq SINE Alu -14 299 1 1796 156 10 42 chr11 64408810 64408974 -86374579 - AluJo SINE Alu -15 297 129 2550 73 0 0 chr11 64408974 64409277 -86374276 - AluY SINE Alu -8 303 1 2364 90 0 7 chr11 64409284 64409584 -86373969 - AluSq SINE Alu -15 298 1 1796 156 10 42 chr11 64409584 64409718 -86373835 - AluJo SINE Alu -189 123 1 3148 171 68 27 chr11 64409718 64410195 -86373358 - L1MB5 LINE L1 -238 5936 5480 2281 105 17 0 chr11 64410195 64410490 -86373063 - AluSc SINE Alu -9 300 1 3148 171 68 27 chr11 64410490 64411037 -86372516 - L1MB5 LINE L1 -694 5480 4871 2166 119 7 0 chr11 64411037 64411331 -86372222 - AluSx SINE Alu -16 296 1 3148 171 68 27 chr11 64411331 64411413 -86372140 - L1MB5 LINE L1 -1303 4871 4794 936 206 6 0 chr11 64411577 64411737 -86371816 - AluJb SINE Alu -15 297 137 2155 112 3 14 chr11 64411775 64411933 -86371620 - AluSx SINE Alu -20 292 137 2330 95 0 0 chr11 64411933 64412228 -86371325 - AluY SINE Alu -16 295 1 2155 112 3 14 chr11 64412228 64412364 -86371189 - AluSx SINE Alu -175 137 1 2318 96 0 10 chr11 64413139 64413441 -86370112 - AluSc SINE Alu -10 299 1 2418 67 0 10 chr11 64413923 64414222 -86369331 + AluSg1 SINE Alu 1 296 -13 2390 81 3 0 chr11 64414232 64414530 -86369023 + AluSq SINE Alu 1 299 -14 2147 98 0 4 chr11 64414530 64414807 -86368746 + AluSq SINE Alu 1 276 -37 227 31 31 0 chr11 64414812 64414844 -86368709 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 646 329 76 22 chr11 64415289 64415657 -86367896 - L2 LINE L2 0 3313 2926 2227 123 0 0 chr11 64415811 64416103 -86367450 + AluSx SINE Alu 1 292 -20 1090 121 0 0 chr11 64417916 64418092 -86365461 - AluY SINE Alu 0 308 133 2141 106 46 0 chr11 64418092 64418376 -86365177 - AluSg SINE Alu -13 297 1 1620 171 23 27 chr11 64418378 64418677 -86364876 - AluJo SINE Alu -14 298 1 762 103 73 7 chr11 64418683 64418819 -86364734 - L1MA5A LINE L1 0 6297 6153 3621 105 34 15 chr11 64418820 64419411 -86364142 - LTR10E LTR ERV1 -31 602 1 1210 143 0 0 chr11 64419431 64419606 -86363947 - AluSg/x SINE Alu -1 311 137 967 160 69 11 chr11 64419980 64420100 -86363453 + AluJo SINE Alu 2 137 -175 254 96 0 19 chr11 64420100 64420152 -86363401 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 967 160 69 11 chr11 64420152 64420206 -86363347 + AluJo SINE Alu 137 186 -126 4482 69 26 29 chr11 64420720 64421386 -86362167 + MER4E LTR ERV1 1 664 -102 1612 157 115 15 chr11 64421386 64421795 -86361758 + LTR7 LTR ERV1 1 450 0 715 93 0 0 chr11 64421795 64421892 -86361661 + MER4E LTR ERV1 654 750 -16 2269 101 6 22 chr11 64421892 64422210 -86361343 + AluSp SINE Alu 1 313 0 2226 106 7 0 chr11 64422223 64422516 -86361037 + AluSx SINE Alu 1 295 -17 2482 145 24 29 chr11 64422516 64422972 -86360581 - LTR36 LTR ERV1 -132 479 26 2397 84 7 3 chr11 64422997 64423307 -86360246 - AluSp SINE Alu -2 311 1 3404 111 59 0 chr11 64423308 64423813 -86359740 - LTR8 LTR ERV1 -156 535 1 934 74 167 49 chr11 64423813 64423909 -86359644 - LTR9 LTR ERV1 -429 183 100 2371 117 0 0 chr11 64423909 64424218 -86359335 + AluSc SINE Alu 1 309 0 934 74 167 49 chr11 64424218 64424283 -86359270 - LTR9 LTR ERV1 -512 100 3 1675 164 21 0 chr11 64424283 64424569 -86358984 - LTR26B LTR ERV1 -8 523 232 2034 92 19 4 chr11 64424571 64424859 -86358694 + AluSq SINE Alu 18 309 0 1054 130 40 6 chr11 64424859 64425036 -86358517 - LTR26B LTR ERV1 -348 183 1 2371 97 3 6 chr11 64425138 64425449 -86358104 + AluSg SINE Alu 1 310 0 331 327 55 20 chr11 64425587 64425786 -86357767 + L2 LINE L2 2671 2876 -438 2079 119 0 53 chr11 64426373 64426693 -86356860 + AluSx SINE Alu 6 308 -4 371 173 0 40 chr11 64427133 64427208 -86356345 - FLAM_A SINE Alu -16 117 46 2508 165 16 44 chr11 64427208 64427743 -86355810 - MER41B LTR ERV1 -12 597 111 2132 121 40 44 chr11 64427807 64427903 -86355650 - THE1C LTR MaLR 0 428 333 1757 122 0 8 chr11 64427903 64428165 -86355388 - AluSx SINE Alu -11 301 42 2132 121 40 44 chr11 64428165 64428496 -86355057 - THE1C LTR MaLR -95 333 1 2116 244 51 52 chr11 64428496 64429089 -86354464 + MER21B LTR ERV1 157 750 -113 4394 164 54 34 chr11 64429089 64429974 -86353579 - MER4D LTR ERV1 0 903 1 2116 244 51 52 chr11 64429974 64430031 -86353522 + MER21B LTR ERV1 750 806 -57 1795 123 17 23 chr11 64430142 64430443 -86353110 + AluSq SINE Alu 1 299 -14 1433 186 25 11 chr11 64430448 64430733 -86352820 + AluJo SINE Alu 1 289 -23 180 200 0 0 chr11 64431327 64431367 -86352186 + GA-rich Low_complexity Low_complexity 2 41 0 2070 132 3 0 chr11 64431492 64431796 -86351757 + AluSx SINE Alu 1 305 -7 1134 189 53 79 chr11 64432082 64432182 -86351371 - LTR56 LTR ERV1 -1 444 343 2065 117 7 0 chr11 64432182 64432524 -86351029 - AluSg SINE Alu 0 310 1 1134 189 53 79 chr11 64432524 64432778 -86350775 - LTR56 LTR ERV1 -102 343 99 1575 119 0 25 chr11 64432782 64433025 -86350528 + AluSg SINE Alu 30 266 -44 270 31 0 0 chr11 64433031 64433063 -86350490 + AluSg SINE Alu 244 275 -27 599 187 0 0 chr11 64433063 64433170 -86350383 - AluSg/x SINE Alu -69 241 135 1888 131 10 13 chr11 64433439 64433752 -86349801 - AluSx SINE Alu 0 312 1 1680 164 0 16 chr11 64434011 64434321 -86349232 + AluJb SINE Alu 1 305 -7 2017 123 3 3 chr11 64434761 64435061 -86348492 + AluSq SINE Alu 1 300 -13 1875 123 3 10 chr11 64435145 64435438 -86348115 - AluSc SINE Alu -6 303 13 4724 68 26 29 chr11 64435744 64436410 -86347143 + MER4E LTR ERV1 1 664 -102 1733 157 115 15 chr11 64436410 64436819 -86346734 + LTR7 LTR ERV1 1 450 0 749 93 0 0 chr11 64436819 64436916 -86346637 + MER4E LTR ERV1 654 750 -16 2273 81 3 0 chr11 64436916 64437214 -86346339 + AluSx SINE Alu 1 299 -13 455 235 151 30 chr11 64437574 64437740 -86345813 - MER5C DNA MER1_type 0 324 139 2744 96 30 37 chr11 64437740 64438086 -86345467 - MER4A LTR ERV1 0 664 319 2071 90 4 0 chr11 64438086 64438410 -86345143 + AluSp SINE Alu 6 330 0 2744 96 30 37 chr11 64438410 64438469 -86345084 - MER4A LTR ERV1 -345 319 261 668 101 10 20 chr11 64438469 64438568 -86344985 - MER4A LTR ERV1 -566 98 1 582 213 21 21 chr11 64438568 64438709 -86344844 - MER5C DNA MER1_type -182 142 2 22 0 0 0 chr11 64438759 64438781 -86344772 + AT_rich Low_complexity Low_complexity 1 22 0 2090 105 3 3 chr11 64439483 64439778 -86343775 + AluSx SINE Alu 1 295 -17 439 293 88 32 chr11 64440060 64440142 -86343411 + L2 LINE L2 2610 2686 -628 1916 108 0 44 chr11 64440142 64440332 -86343221 - AluSx SINE Alu 0 313 140 261 0 0 0 chr11 64440332 64440361 -86343192 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1916 108 0 44 chr11 64440361 64440496 -86343057 - AluSx SINE Alu -173 140 1 439 293 88 32 chr11 64440496 64440661 -86342892 + L2 LINE L2 2686 2872 -442 800 209 8 107 chr11 64440925 64441035 -86342518 + MER58C DNA MER1_type 1 120 -2300 222 37 0 0 chr11 64441035 64441062 -86342491 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2284 80 0 13 chr11 64441064 64441363 -86342190 - AluSq SINE Alu -18 295 1 800 209 8 107 chr11 64441363 64441399 -86342154 + MER58C DNA MER1_type 121 159 -2261 660 152 96 32 chr11 64441399 64441524 -86342029 + FLAM_C SINE Alu 1 133 0 800 209 8 107 chr11 64441524 64441607 -86341946 + MER58C DNA MER1_type 159 211 -4 2034 117 7 0 chr11 64441655 64441955 -86341598 + AluSq SINE Alu 2 303 -10 563 249 53 10 chr11 64441956 64442165 -86341388 + L1ME3A LINE L1 5730 5947 -223 6568 129 21 19 chr11 64442166 64443043 -86340510 + L1 LINE L1 4125 5006 -1140 2174 112 0 0 chr11 64443043 64443339 -86340214 + AluSx SINE Alu 1 296 -16 6568 129 21 19 chr11 64443339 64443617 -86339936 + L1 LINE L1 5006 5282 -864 1975 123 7 13 chr11 64443617 64443926 -86339627 + AluSg SINE Alu 1 307 -3 765 84 19 0 chr11 64444030 64444137 -86339416 - AluSq/x SINE Alu -203 110 2 1875 152 0 7 chr11 64444139 64444441 -86339112 - AluJo SINE Alu -12 300 1 1905 113 27 30 chr11 64444499 64444799 -86338754 + AluSx SINE Alu 1 299 -13 313 288 94 68 chr11 64444852 64445002 -86338551 - L1ME3 LINE L1 -23 6139 5981 2115 94 3 0 chr11 64445002 64445299 -86338254 - AluSg SINE Alu -12 298 1 313 288 94 68 chr11 64445299 64445339 -86338214 - L1ME3 LINE L1 -181 5981 5944 329 302 40 0 chr11 64445496 64445622 -86337931 - L1MC5 LINE L1 -519 7442 7312 455 218 129 41 chr11 64445897 64446044 -86337509 - MIR SINE MIR -41 221 62 1964 128 3 0 chr11 64446044 64446333 -86337220 + AluSx SINE Alu 1 290 -22 449 303 119 16 chr11 64446735 64446920 -86336633 + MIR SINE MIR 45 248 -14 1614 143 129 91 chr11 64446990 64447063 -86336490 - MLT1A1 LTR MaLR -2 363 294 1462 179 0 47 chr11 64447063 64447359 -86336194 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr11 64447359 64447379 -86336174 + (TA)n Simple_repeat Simple_repeat 2 21 0 1614 143 129 91 chr11 64447379 64447654 -86335899 - MLT1A1 LTR MaLR -70 295 1 2384 185 9 23 chr11 64447782 64448219 -86335334 + LTR3 LTR ERVK 1 431 -1 20109 114 13 7 chr11 64448227 64451118 -86332435 + HERVK3 LTR ERVK 2 2910 -4333 1118 66 0 0 chr11 64451105 64451242 -86332311 + HERVK3 LTR ERVK 4119 4255 -2988 * 330 45 0 0 chr11 64451249 64451293 -86332260 + (TA)n Simple_repeat Simple_repeat 1 44 0 189 0 0 0 chr11 64451292 64451313 -86332240 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 18766 106 5 2 chr11 64451315 64453912 -86329641 + HERVK3 LTR ERVK 4636 7241 -2 2543 170 7 16 chr11 64453914 64454350 -86329203 + LTR3 LTR ERVK 1 432 0 1757 106 38 8 chr11 64454469 64454733 -86328820 + AluSx SINE Alu 2 273 -39 249 297 0 0 chr11 64454760 64454834 -86328719 + CT-rich Low_complexity Low_complexity 4 77 0 255 307 143 14 chr11 64455037 64455177 -86328376 + MIR SINE MIR 105 262 0 1868 124 0 51 chr11 64455189 64455503 -86328050 + AluSg SINE Alu 1 298 -12 274 244 12 23 chr11 64456350 64456436 -86327117 - L1MC5 LINE L1 -45 7916 7832 1894 125 4 4 chr11 64457358 64457638 -86325915 + AluSq SINE Alu 1 280 -33 455 235 151 30 chr11 64458018 64458184 -86325369 - MER5C DNA MER1_type 0 324 139 2744 96 30 37 chr11 64458184 64458530 -86325023 - MER4A LTR ERV1 0 664 319 2061 90 4 0 chr11 64458530 64458854 -86324699 + AluSp SINE Alu 6 330 0 2744 96 30 37 chr11 64458854 64458913 -86324640 - MER4A LTR ERV1 -345 319 261 668 101 10 20 chr11 64458913 64459012 -86324541 - MER4A LTR ERV1 -566 98 1 582 213 21 21 chr11 64459012 64459153 -86324400 - MER5C DNA MER1_type -182 142 2 22 0 0 0 chr11 64459203 64459225 -86324328 + AT_rich Low_complexity Low_complexity 1 22 0 2090 105 3 3 chr11 64459928 64460223 -86323330 + AluSx SINE Alu 1 295 -17 439 293 88 32 chr11 64460505 64460587 -86322966 + L2 LINE L2 2610 2686 -628 1898 107 0 53 chr11 64460587 64460780 -86322773 - AluSx SINE Alu 0 313 142 180 0 0 0 chr11 64460780 64460800 -86322753 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1898 107 0 53 chr11 64460800 64460935 -86322618 - AluSx SINE Alu -171 142 1 439 293 88 32 chr11 64460935 64461100 -86322453 + L2 LINE L2 2686 2872 -442 818 205 8 107 chr11 64461364 64461474 -86322079 + MER58C DNA MER1_type 1 120 -2300 258 32 0 0 chr11 64461474 64461505 -86322048 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2332 70 0 13 chr11 64461507 64461806 -86321747 - AluSq SINE Alu -18 295 1 818 205 8 107 chr11 64461806 64461842 -86321711 + MER58C DNA MER1_type 121 159 -2261 674 144 96 32 chr11 64461842 64461967 -86321586 + FLAM_C SINE Alu 1 133 0 818 205 8 107 chr11 64461967 64462050 -86321503 + MER58C DNA MER1_type 159 211 -4 2193 97 7 0 chr11 64462098 64462398 -86321155 + AluSq SINE Alu 2 303 -10 595 244 53 10 chr11 64462399 64462608 -86320945 + L1ME3A LINE L1 5730 5947 -223 2131 218 36 5 chr11 64462609 64463165 -86320388 + L1 LINE L1 4125 4697 -1449 1910 106 7 7 chr11 64463404 64463687 -86319866 - AluSx SINE Alu -29 283 1 182 244 45 24 chr11 64464141 64464217 -86319336 + MIR SINE MIR 33 110 -98 2109 106 10 0 chr11 64464289 64464590 -86318963 + AluSx SINE Alu 1 304 -8 910 244 83 20 chr11 64465236 64465291 -86318262 + MLT1C LTR MaLR 198 248 -219 2066 97 10 17 chr11 64465291 64465591 -86317962 + AluSq SINE Alu 1 298 -15 910 244 83 20 chr11 64465591 64465789 -86317764 + MLT1C LTR MaLR 248 467 0 222 267 33 67 chr11 64465886 64465976 -86317577 - L3 LINE CR1 -11 1566 1480 243 163 0 0 chr11 64466521 64466570 -86316983 - MLT1C LTR MaLR -233 234 186 1711 163 7 3 chr11 64466802 64467096 -86316457 + AluJb SINE Alu 1 295 -17 2514 55 0 0 chr11 64467232 64467542 -86316011 - AluY SINE Alu 0 311 2 317 313 12 19 chr11 64467679 64467839 -86315714 + L1MEc LINE L1 22 180 -6216 763 117 36 0 chr11 64467840 64467951 -86315602 + AluSq SINE Alu 74 188 -125 2318 63 0 0 chr11 64468047 64468376 -86315177 - AluSx SINE Alu 0 329 1 498 33 0 0 chr11 64468376 64468436 -86315117 + (TTA)n Simple_repeat Simple_repeat 3 62 0 2119 87 0 7 chr11 64468437 64468725 -86314828 - AluSx SINE Alu -26 286 1 21 0 0 0 chr11 64468985 64469006 -86314547 + AT_rich Low_complexity Low_complexity 1 21 0 2254 83 3 19 chr11 64469455 64469769 -86313784 - AluSc SINE Alu 0 309 1 1808 129 21 0 chr11 64469772 64470059 -86313494 - AluSx SINE Alu -19 293 1 2150 152 89 56 chr11 64470082 64470597 -86312956 - Cheshire DNA MER1_type -2 2418 1887 584 171 48 0 chr11 64470602 64470707 -86312846 + MER66A LTR ERV1 6 115 -363 6087 76 13 16 chr11 64470707 64471459 -86312094 + L1PA12 LINE L1 5327 6078 -90 1600 127 97 86 chr11 64471459 64471830 -86311723 - THE1C LTR MaLR 0 375 1 6087 76 13 16 chr11 64471830 64471910 -86311643 + L1PA12 LINE L1 6078 6157 -11 1599 159 166 7 chr11 64471910 64472218 -86311335 + MER66B LTR ERV1 100 456 -30 4862 183 17 1 chr11 64472254 64473142 -86310411 - Cheshire DNA MER1_type -612 1808 907 1283 198 136 42 chr11 64473142 64473525 -86310028 - MLT1C LTR MaLR 0 467 49 512 92 0 0 chr11 64473585 64473650 -86309903 - Cheshire DNA MER1_type -1509 911 847 974 166 28 62 chr11 64473650 64473861 -86309692 - AluJo SINE Alu -17 295 92 295 194 28 0 chr11 64473961 64474033 -86309520 - L1ME1 LINE L1 -293 5873 5800 1013 257 0 0 chr11 64474034 64474256 -86309297 - MLT1A1 LTR MaLR 0 365 144 349 159 13 21 chr11 64474344 64474421 -86309132 - AluJ/FRAM SINE Alu -21 281 216 * 420 184 23 0 chr11 64474406 64474493 -86309060 - MLT1A1 LTR MaLR -203 162 74 1234 106 0 0 chr11 64474493 64474663 -86308890 - AluSp SINE Alu -10 303 134 2205 99 13 0 chr11 64474663 64474966 -86308587 - AluSq SINE Alu -6 307 1 1974 99 43 0 chr11 64475012 64475294 -86308259 - AluSx SINE Alu -18 294 1 802 160 153 0 chr11 64475299 64475449 -86308104 + MER46A DNA MER2_type 55 227 -9 325 118 20 0 chr11 64475450 64475501 -86308052 - MLT1A1 LTR MaLR -313 52 1 1995 205 16 3 chr11 64475501 64475886 -86307667 - L1ME1 LINE L1 -363 5803 5414 2206 110 0 3 chr11 64475951 64476260 -86307293 - AluSq SINE Alu -5 308 1 1280 225 19 10 chr11 64476289 64476600 -86306953 + HAL1 LINE L1 1524 1837 -670 1362 178 18 57 chr11 64476674 64476848 -86306705 - AluJb SINE Alu -12 300 121 342 0 0 0 chr11 64476848 64476886 -86306667 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1979 104 4 4 chr11 64476886 64477164 -86306389 - AluSc SINE Alu -30 279 2 1362 178 18 57 chr11 64477164 64477301 -86306252 - AluJb SINE Alu -189 123 9 379 294 180 12 chr11 64477454 64477699 -86305854 + HAL1 LINE L1 2222 2507 0 271 232 30 10 chr11 64477717 64477816 -86305737 + L1ME4a LINE L1 5835 5935 -186 1793 154 0 3 chr11 64477882 64478167 -86305386 - AluJo SINE Alu -23 289 6 22 99 0 0 chr11 64478183 64478254 -86305299 + AT_rich Low_complexity Low_complexity 1 71 0 405 231 0 0 chr11 64478281 64478359 -86305194 - FLAM SINE Alu -12 121 44 2007 140 0 3 chr11 64479550 64479858 -86303695 - AluSx SINE Alu -5 307 1 225 308 47 0 chr11 64479859 64479966 -86303587 - L1ME LINE L1 -272 5892 5781 308 152 0 0 chr11 64479970 64480016 -86303537 + L1MC4 LINE L1 6658 6703 -1339 1555 109 112 4 chr11 64480017 64480284 -86303269 - AluSq SINE Alu -15 298 3 21 36 0 0 chr11 64480286 64480314 -86303239 + AT_rich Low_complexity Low_complexity 1 28 0 761 140 18 0 chr11 64480320 64480434 -86303119 - FLAM_C SINE Alu -25 118 3 23 33 0 0 chr11 64480476 64480506 -86303047 + AT_rich Low_complexity Low_complexity 1 30 0 464 250 17 81 chr11 64480605 64480777 -86302776 + MER5B DNA MER1_type 18 178 0 302 311 18 85 chr11 64480790 64480875 -86302678 - L1ME LINE L1 -529 5641 5569 2042 107 4 0 chr11 64480875 64481184 -86302369 + AluSq SINE Alu 1 310 0 302 311 18 85 chr11 64481184 64481260 -86302293 - L1ME LINE L1 -601 5569 5489 743 134 6 116 chr11 64481370 64481542 -86302011 + MER21A LTR ERV1 13 165 -766 1157 167 45 0 chr11 64481569 64481767 -86301786 + MER39 LTR ERV1 267 473 -234 2205 85 0 0 chr11 64481772 64482104 -86301449 - AluSg SINE Alu 0 333 2 379 136 0 0 chr11 64482525 64482584 -86300969 - MLT1D LTR MaLR -5 500 442 858 159 8 0 chr11 64482584 64482716 -86300837 + FLAM_C SINE Alu 1 133 0 544 160 11 11 chr11 64482756 64482850 -86300703 - MLT1D LTR MaLR -59 446 353 790 172 0 15 chr11 64482868 64483002 -86300551 - FLAM_C SINE Alu -1 132 1 5584 135 60 58 chr11 64483003 64483487 -86300066 + LTR49-int LTR ERV1 717 1199 -5399 2118 113 3 3 chr11 64483487 64483796 -86299757 - AluSg SINE Alu -1 309 1 2141 121 0 3 chr11 64483796 64484101 -86299452 - AluSx SINE Alu -8 304 1 5584 135 60 58 chr11 64484101 64485706 -86297847 + LTR49-int LTR ERV1 1198 3681 -2917 * 12712 99 43 23 chr11 64485704 64487294 -86296259 + LTR49-int LTR ERV1 3836 5476 -1122 2174 96 0 13 chr11 64487294 64487595 -86295958 - AluSp SINE Alu -16 297 1 12712 99 43 23 chr11 64487595 64488036 -86295517 + LTR49-int LTR ERV1 5476 5907 -691 2039 124 10 0 chr11 64488036 64488334 -86295219 - AluSx SINE Alu -11 301 1 1798 161 3 0 chr11 64488481 64488780 -86294773 + AluSx SINE Alu 2 301 -11 869 191 45 124 chr11 64488780 64489246 -86294307 + LTR49-int LTR ERV1 3471 3899 -2432 1620 127 101 4 chr11 64489252 64489528 -86294025 + AluJb SINE Alu 1 303 -9 1736 131 7 11 chr11 64489539 64489821 -86293732 + AluSc SINE Alu 3 283 -26 1149 166 16 5 chr11 64489842 64490029 -86293524 - MER49 LTR ERV1 -734 189 1 1801 128 16 20 chr11 64490197 64490503 -86293050 + AluSq SINE Alu 1 305 -8 1378 185 23 33 chr11 64490510 64490812 -86292741 + AluJo SINE Alu 3 301 -11 180 200 0 0 chr11 64491378 64491418 -86292135 + GA-rich Low_complexity Low_complexity 2 41 0 1965 139 3 3 chr11 64491543 64491844 -86291709 + AluSx SINE Alu 1 301 -11 1034 177 43 62 chr11 64492107 64492250 -86291303 - LTR56 LTR ERV1 0 437 293 240 59 0 0 chr11 64492250 64492284 -86291269 + (TTGTG)n Simple_repeat Simple_repeat 4 37 0 2087 104 7 0 chr11 64492284 64492566 -86290987 - AluSg SINE Alu -26 284 1 1034 177 43 62 chr11 64492566 64492771 -86290782 - LTR56 LTR ERV1 -142 295 123 263 189 0 38 chr11 64492901 64492954 -86290599 - MER21A LTR ERV1 -880 51 1 2146 95 26 0 chr11 64493017 64493322 -86290231 - AluSp SINE Alu 0 313 1 987 190 130 84 chr11 64494000 64494069 -86289484 - MLT1C LTR MaLR 0 467 403 2188 88 0 0 chr11 64494069 64494380 -86289173 + AluSp SINE Alu 1 311 0 987 190 130 84 chr11 64494380 64494678 -86288875 - MLT1C LTR MaLR -64 403 82 1867 150 0 10 chr11 64494718 64495032 -86288521 + AluJb SINE Alu 1 311 -1 2188 102 0 3 chr11 64495039 64495343 -86288210 - AluSc SINE Alu -6 303 1 388 228 33 0 chr11 64495346 64495438 -86288115 - MLT1C LTR MaLR -372 95 1 796 236 147 15 chr11 64495592 64495851 -86287702 - MLT1C LTR MaLR 0 467 175 302 262 87 29 chr11 64495883 64495986 -86287567 - MLT1C LTR MaLR -396 109 1 849 126 0 16 chr11 64496048 64496175 -86287378 - FLAM_C SINE Alu -8 125 1 1331 276 72 52 chr11 64496200 64496293 -86287260 - L2 LINE L2 -3 3310 3220 1713 138 80 7 chr11 64496293 64496582 -86286971 - AluSx SINE Alu 0 312 3 1881 147 0 19 chr11 64496586 64496899 -86286654 - AluSx SINE Alu -5 307 1 1331 276 72 52 chr11 64496899 64497351 -86286202 - L2 LINE L2 -95 3218 2776 228 67 0 0 chr11 64497351 64497381 -86286172 + (TTG)n Simple_repeat Simple_repeat 1 30 0 2130 80 4 0 chr11 64497381 64497655 -86285898 - AluSg SINE Alu -35 275 1 1331 276 72 52 chr11 64497655 64497953 -86285600 - L2 LINE L2 -536 2777 2447 776 147 0 0 chr11 64497987 64498116 -86285437 - L1MB3 LINE L1 -4 6179 6051 202 211 58 0 chr11 64498612 64498664 -86284889 + G-rich Low_complexity Low_complexity 3 57 0 429 36 0 279 chr11 64498906 64498959 -86284594 - MADE1 DNA Mariner 0 80 72 2171 107 3 3 chr11 64498959 64499257 -86284296 + AluSx SINE Alu 2 299 -13 429 36 0 279 chr11 64499257 64499314 -86284239 - MADE1 DNA Mariner -8 72 1 2371 124 61 211 chr11 64499389 64499564 -86283989 - Tigger7 DNA MER2_type 0 2487 2287 900 128 0 0 chr11 64499564 64499697 -86283856 + FLAM_C SINE Alu 1 133 -10 2371 124 61 211 chr11 64499697 64500048 -86283505 - Tigger7 DNA MER2_type -200 2287 1885 2240 100 3 0 chr11 64500048 64500349 -86283204 - AluSp SINE Alu -11 302 1 2404 93 0 0 chr11 64500349 64500661 -86282892 - AluSq SINE Alu -1 312 1 2371 124 61 211 chr11 64500661 64500814 -86282739 - Tigger7 DNA MER2_type -600 1887 1796 1365 202 18 0 chr11 64500828 64501110 -86282443 - AluJo SINE Alu -19 293 7 1227 197 0 42 chr11 64501831 64502095 -86281458 + AluJo SINE Alu 1 253 -59 748 181 0 30 chr11 64502232 64502365 -86281188 - FLAM_C SINE Alu -4 129 1 789 177 0 15 chr11 64502481 64502611 -86280942 + AluJo/FLAM SINE Alu 2 129 -183 2228 108 0 6 chr11 64502614 64502928 -86280625 + AluSx SINE Alu 1 312 0 2275 92 3 0 chr11 64502937 64503242 -86280311 + AluSp SINE Alu 1 306 -7 2072 91 67 0 chr11 64503261 64503546 -86280007 + AluSx SINE Alu 1 304 -8 2121 125 0 0 chr11 64504258 64504553 -86279000 - AluSx SINE Alu -14 298 4 800 263 110 4 chr11 64504604 64504840 -86278713 + MIR SINE MIR 1 261 -1 2159 119 0 0 chr11 64504863 64505166 -86278387 + AluSq SINE Alu 1 303 -10 347 247 69 65 chr11 64506421 64506498 -86277055 + L1MC/D LINE L1 5291 5366 -814 1955 98 0 7 chr11 64506498 64506775 -86276778 + AluY SINE Alu 25 299 -12 347 247 69 65 chr11 64506775 64506943 -86276610 + L1MC/D LINE L1 5366 5542 -638 195 42 0 0 chr11 64507066 64507090 -86276463 + (CA)n Simple_repeat Simple_repeat 2 25 0 2614 213 74 34 chr11 64507159 64507779 -86275774 + MER21B LTR ERV1 1 645 -218 216 0 0 0 chr11 64508609 64508633 -86274920 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 225 0 0 0 chr11 64508777 64508802 -86274751 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1265 201 0 42 chr11 64508807 64509095 -86274458 - AluSx SINE Alu -36 276 1 483 285 101 65 chr11 64509099 64509467 -86274086 + L1MC4a LINE L1 6096 6476 -1332 2335 60 0 17 chr11 64509552 64509853 -86273700 + AluY SINE Alu 1 296 -15 281 279 35 12 chr11 64509950 64510036 -86273517 + L1MD3 LINE L1 6676 6763 -1232 288 218 9 118 chr11 64510096 64510206 -86273347 + L1MC5 LINE L1 6719 6816 -1145 3985 137 25 22 chr11 64510748 64511414 -86272139 - HERVK3 LTR ERVK -6572 671 4 2374 185 9 23 chr11 64511424 64511861 -86271692 - LTR3 LTR ERVK -1 431 1 1258 159 179 32 chr11 64511989 64512241 -86271312 + MLT1A1 LTR MaLR 1 289 -76 27 29 0 0 chr11 64512256 64512290 -86271263 + AT_rich Low_complexity Low_complexity 1 34 0 1453 205 11 77 chr11 64512917 64513028 -86270525 - MER39 LTR ERV1 -180 527 410 2079 118 0 3 chr11 64513028 64513332 -86270221 - AluSq SINE Alu -10 303 1 1453 205 11 77 chr11 64513332 64513627 -86269926 - MER39 LTR ERV1 -297 410 139 1022 122 23 98 chr11 64513605 64513819 -86269734 - MER21A LTR ERV1 -733 198 1 * 2199 85 26 0 chr11 64513888 64514193 -86269360 - AluSp SINE Alu 0 313 1 1423 165 7 14 chr11 64515057 64515336 -86268217 + AluJo SINE Alu 27 303 -9 846 226 0 0 chr11 64515339 64515498 -86268055 + AluJo/FRAM SINE Alu 137 295 -7 2253 81 3 3 chr11 64515499 64515796 -86267757 + AluSp SINE Alu 1 297 -16 267 31 0 0 chr11 64515960 64515992 -86267561 + (CA)n Simple_repeat Simple_repeat 2 33 0 2159 110 0 0 chr11 64516138 64516437 -86267116 - AluSq SINE Alu -14 299 1 1372 163 0 9 chr11 64516513 64516740 -86266813 - AluJo SINE Alu -87 225 1 1953 108 14 30 chr11 64516799 64517094 -86266459 + AluSx SINE Alu 1 290 -22 424 326 114 11 chr11 64517496 64517680 -86265873 + MIR SINE MIR 45 247 -15 515 123 0 0 chr11 64517751 64517824 -86265729 - MLT1A1 LTR MaLR -2 363 291 725 131 0 54 chr11 64517825 64517955 -86265598 + FLAM_C SINE Alu 2 124 -19 1952 125 0 7 chr11 64518086 64518375 -86265178 - AluSg SINE Alu -22 288 2 1041 184 24 0 chr11 64518376 64518544 -86265009 + MER21A LTR ERV1 504 675 -256 1522 177 109 0 chr11 64518546 64518812 -86264741 - MLT1A1 LTR MaLR -70 295 1 1162 127 6 6 chr11 64518950 64519123 -86264430 + AluSx SINE Alu 2 174 -138 222 296 49 0 chr11 64519389 64519470 -86264083 - MIR SINE MIR -95 113 29 1238 196 29 12 chr11 64519519 64519764 -86263789 + MER21B LTR ERV1 615 863 0 1713 149 3 20 chr11 64520486 64520788 -86262765 + AluSx SINE Alu 1 297 -15 609 186 11 27 chr11 64520788 64520971 -86262582 + GA-rich Low_complexity Low_complexity 1 180 0 265 192 77 26 chr11 64521160 64521238 -86262315 - MLT1A1 LTR MaLR -13 536 455 286 117 50 0 chr11 64521275 64521335 -86262218 + T-rich Low_complexity Low_complexity 2 64 0 15634 117 9 4 chr11 64522412 64524698 -86258855 - HERVK3 LTR ERVK -312 6931 4632 243 0 0 0 chr11 64524698 64524725 -86258828 + (TG)n Simple_repeat Simple_repeat 2 28 0 918 84 0 0 chr11 64524768 64524887 -86258666 - HERVK3 LTR ERVK -2985 4258 4140 753 122 9 0 chr11 64526270 64526377 -86257176 - AluSg SINE Alu -201 109 2 1041 184 24 0 chr11 64526378 64526546 -86257007 + MER21A LTR ERV1 504 675 -256 1534 173 109 0 chr11 64526548 64526814 -86256739 - MLT1A1 LTR MaLR -70 295 1 1162 127 6 6 chr11 64526952 64527125 -86256428 + AluSx SINE Alu 2 174 -138 204 309 49 0 chr11 64527391 64527472 -86256081 - MIR SINE MIR -95 113 29 1255 192 29 12 chr11 64527521 64527766 -86255787 + MER21B LTR ERV1 615 863 0 2030 136 10 7 chr11 64528488 64528790 -86254763 + AluJo SINE Alu 1 303 -9 1114 136 0 0 chr11 64528792 64528946 -86254607 + AluSg/x SINE Alu 136 289 -23 2410 81 3 3 chr11 64528953 64529250 -86254303 + AluSp SINE Alu 1 297 -16 237 83 0 0 chr11 64529414 64529450 -86254103 + (CA)n Simple_repeat Simple_repeat 2 37 0 528 155 0 0 chr11 64529588 64529672 -86253881 - AluSp/q SINE Alu -14 299 216 360 111 0 0 chr11 64529796 64529850 -86253703 + (TA)n Simple_repeat Simple_repeat 1 54 0 198 0 0 0 chr11 64529850 64529872 -86253681 + (CA)n Simple_repeat Simple_repeat 1 22 0 1591 161 7 18 chr11 64530005 64530285 -86253268 - AluJb SINE Alu -6 306 30 1069 128 24 96 chr11 64530289 64530539 -86253014 + LTR56 LTR ERV1 99 330 -115 2069 119 7 7 chr11 64530544 64530829 -86252724 + AluSg SINE Alu 1 285 -25 3112 184 79 21 chr11 64530944 64531311 -86252242 - Cheshire DNA MER1_type -1660 760 416 2385 113 0 0 chr11 64531311 64531621 -86251932 + AluSg SINE Alu 1 310 0 3112 184 79 21 chr11 64531621 64531971 -86251582 - Cheshire DNA MER1_type -2004 416 1 2206 130 8 28 chr11 64532006 64532360 -86251193 - MSTC LTR MaLR 0 428 82 2266 132 0 0 chr11 64532428 64532732 -86250821 - AluSx SINE Alu -6 306 3 224 371 28 42 chr11 64533548 64533691 -86249862 + L2 LINE L2 3125 3265 -7 * 315 333 0 0 chr11 64533662 64533749 -86249804 - L2 LINE L2 -2 3311 3225 711 123 0 0 chr11 64533832 64533938 -86249615 - AluSx SINE Alu -13 299 194 1255 57 0 0 chr11 64533939 64534080 -86249473 - AluSx SINE Alu -172 141 1 1717 227 90 45 chr11 64534162 64534456 -86249097 + Charlie1a DNA MER1_type 1 280 -2481 2088 130 10 3 chr11 64534456 64534749 -86248804 - AluSx SINE Alu -14 298 4 1717 227 90 45 chr11 64534749 64535009 -86248544 + Charlie1a DNA MER1_type 280 580 -875 2249 74 3 23 chr11 64535734 64536033 -86247520 + AluSq SINE Alu 1 293 -20 652 213 87 53 chr11 64536171 64536378 -86247175 + MER20 DNA MER1_type 2 215 -4 190 270 16 32 chr11 64536380 64536443 -86247110 + MIR SINE MIR 90 151 -57 289 228 30 20 chr11 64536655 64536756 -86246797 - Charlie2 DNA MER1_type -925 1937 1836 * 365 321 52 0 chr11 64536740 64536874 -86246679 - Charlie2 DNA MER1_type -2540 322 182 2501 94 3 0 chr11 64536881 64537190 -86246363 + AluSp SINE Alu 1 310 -3 353 75 0 0 chr11 64537222 64537275 -86246278 + AluSp/q SINE Alu 248 300 -3 2357 98 6 25 chr11 64537362 64537679 -86245874 + AluSq SINE Alu 1 311 -2 13465 216 27 25 chr11 64537810 64540243 -86243310 - L1PA13 LINE L1 -1289 5508 3081 2040 131 25 35 chr11 64540243 64540413 -86243140 - AluSx SINE Alu -1 311 144 2108 144 0 3 chr11 64540413 64540712 -86242841 - AluSx SINE Alu -14 298 1 2040 131 25 35 chr11 64540712 64540855 -86242698 - AluSx SINE Alu -168 144 1 13465 216 27 25 chr11 64540855 64541682 -86241871 - L1PA13 LINE L1 -3716 3081 2257 2384 94 0 7 chr11 64541682 64541979 -86241574 + AluSx SINE Alu 1 295 -17 13465 216 27 25 chr11 64541979 64542411 -86241142 - L1PA13 LINE L1 -4540 2257 1827 4538 70 0 0 chr11 64542411 64542998 -86240555 - LTR14C LTR ERVK 0 587 1 13465 216 27 25 chr11 64542998 64543154 -86240399 - L1PA13 LINE L1 -4970 1827 1673 1489 108 0 0 chr11 64543154 64543340 -86240213 - AluSc SINE Alu -123 186 1 13465 216 27 25 chr11 64543340 64543668 -86239885 - L1PA13 LINE L1 -5124 1673 1285 360 158 30 133 chr11 64543836 64543875 -86239678 - L1MA7 LINE L1 0 6291 6250 2133 155 0 0 chr11 64543875 64544178 -86239375 - AluSx SINE Alu -9 303 1 360 158 30 133 chr11 64544178 64544303 -86239250 - L1MA7 LINE L1 -41 6250 6144 1890 171 3 3 chr11 64544304 64544613 -86238940 - AluJo SINE Alu -3 309 1 323 340 90 0 chr11 64544850 64544994 -86238559 - MIR SINE MIR -21 241 85 2127 108 14 7 chr11 64546142 64546437 -86237116 - AluSx SINE Alu -15 297 1 186 43 0 0 chr11 64546889 64546912 -86236641 + (GA)n Simple_repeat Simple_repeat 1 23 0 321 140 0 0 chr11 64547384 64547441 -86236112 + (TCCCC)n Simple_repeat Simple_repeat 2 58 0 204 302 62 0 chr11 64547842 64547938 -86235615 + MIR SINE MIR 99 200 -62 353 302 46 22 chr11 64547983 64548161 -86235392 + MIR SINE MIR 25 207 -55 357 202 179 28 chr11 64548727 64548886 -86234667 + MER20B DNA MER1_type 35 214 -5 376 266 14 7 chr11 64549189 64549423 -86234130 + (CTG)n Simple_repeat Simple_repeat 1 235 0 412 253 144 14 chr11 64549661 64549807 -86233746 + MIR SINE MIR 72 236 -26 491 233 269 10 chr11 64549931 64550124 -86233429 - MIR SINE MIR -4 258 16 2296 112 3 16 chr11 64551721 64552035 -86231518 - AluSx SINE Alu -2 310 1 394 319 44 21 chr11 64552466 64552758 -86230795 + L1MDa LINE L1 30 651 -5879 322 164 55 170 chr11 64553367 64553532 -86230021 + L1MDa LINE L1 946 1091 -5452 689 92 10 0 chr11 64556039 64556137 -86227416 + AluSq/x SINE Alu 33 131 -181 839 122 70 192 chr11 64557778 64557858 -86225695 + Charlie1 DNA MER1_type 2314 2402 -359 2158 116 0 7 chr11 64557858 64558150 -86225403 - AluSc SINE Alu -19 290 1 839 122 70 192 chr11 64558150 64558497 -86225056 + Charlie1 DNA MER1_type 2402 2689 -72 1288 152 49 0 chr11 64558499 64558703 -86224850 - AluJo SINE Alu -13 299 86 211 297 70 0 chr11 64558857 64558985 -86224568 - L2 LINE L2 -310 2962 2826 303 187 0 40 chr11 64559682 64559757 -86223796 + LTR16C LTR ERVL 419 490 -1 215 210 145 0 chr11 64559994 64560056 -86223497 - MIR SINE MIR -111 151 81 240 223 99 74 chr11 64560672 64560793 -86222760 + MIR SINE MIR 108 231 -31 2224 109 0 35 chr11 64560830 64561142 -86222411 + AluSx SINE Alu 1 301 -11 273 256 7 80 chr11 64561332 64561469 -86222084 + L2 LINE L2 2924 3050 -222 492 356 27 0 chr11 64561524 64561746 -86221807 - MIR SINE MIR -6 256 29 233 308 0 0 chr11 64561983 64562035 -86221518 + MIR3 SINE MIR 108 159 -49 842 225 5 24 chr11 64562036 64562245 -86221308 - MER3 DNA MER1_type 0 209 5 313 315 89 20 chr11 64563239 64563385 -86220168 + MIR SINE MIR 34 189 -73 403 299 55 19 chr11 64563432 64563634 -86219919 - MIR SINE MIR -48 214 4 2106 132 16 0 chr11 64565585 64565888 -86217665 + AluSx SINE Alu 1 308 -4 1950 139 36 6 chr11 64565928 64566260 -86217293 - MER2 DNA MER2_type 0 344 3 2328 100 0 7 chr11 64566425 64566726 -86216827 + AluSg SINE Alu 1 299 -11 344 254 131 8 chr11 64567067 64567189 -86216364 + L2 LINE L2 3136 3272 0 344 251 164 18 chr11 64568032 64568203 -86215350 - MIR SINE MIR -65 197 2 2230 208 10 0 chr11 64569508 64570008 -86213545 + L1PA15 LINE L1 4827 5331 -815 626 179 0 137 chr11 64570008 64570217 -86213336 + AluJb SINE Alu 137 322 0 5334 118 28 6 chr11 64570217 64571044 -86212509 + L1PA15 LINE L1 5321 6165 0 607 307 57 68 chr11 64571171 64571555 -86211998 + L1M4 LINE L1 4233 4612 -1534 553 256 43 12 chr11 64571630 64571794 -86211759 + MIR SINE MIR 82 250 -12 343 297 116 26 chr11 64572212 64572444 -86211109 + Charlie2 DNA MER1_type 66 318 -2464 353 270 17 0 chr11 64572450 64572565 -86210988 + Charlie2 DNA MER1_type 1884 2000 -862 4225 132 62 32 chr11 64572612 64572821 -86210732 + L1MA6 LINE L1 5410 5611 -689 1139 211 4 25 chr11 64572821 64573063 -86210490 + MER8 DNA MER2_type 1 237 -2 4225 132 62 32 chr11 64573063 64573370 -86210183 + L1MA6 LINE L1 5611 5907 -393 2416 99 0 10 chr11 64573370 64573684 -86209869 + AluSx SINE Alu 1 311 -1 4225 132 62 32 chr11 64573684 64574031 -86209522 + L1MA6 LINE L1 5907 6300 0 772 243 99 22 chr11 64574031 64574344 -86209209 + Charlie2 DNA MER1_type 1980 2316 -546 1826 173 0 40 chr11 64574624 64574947 -86208606 + AluJo SINE Alu 1 310 -2 2133 113 0 20 chr11 64575013 64575331 -86208222 - AluSx SINE Alu 0 312 1 2306 106 0 7 chr11 64576041 64576343 -86207210 + AluSg SINE Alu 1 300 -10 396 0 0 0 chr11 64576354 64576398 -86207155 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 2208 111 3 16 chr11 64577751 64578058 -86205495 - AluSc SINE Alu -6 303 1 199 273 0 0 chr11 64578249 64578293 -86205260 + MIR SINE MIR 82 125 -83 2476 78 3 0 chr11 64578917 64579226 -86204327 + AluSx SINE Alu 1 310 -2 228 67 0 0 chr11 64579233 64579263 -86204290 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 1201 193 119 0 chr11 64580983 64581252 -86202301 + L1MB3 LINE L1 4532 4832 -1314 2890 157 31 34 chr11 64581253 64581838 -86201715 + L1MB3 LINE L1 5600 6182 -1 690 165 4 6 chr11 64582052 64582308 -86201245 + AluJ SINE Alu 1 303 -9 232 292 47 76 chr11 64583700 64583871 -86199682 + MIR SINE MIR 88 253 -9 22 0 0 0 chr11 64583999 64584021 -86199532 + AT_rich Low_complexity Low_complexity 1 22 0 192 77 0 0 chr11 64584644 64584670 -86198883 + (A)n Simple_repeat Simple_repeat 1 26 0 2025 108 0 16 chr11 64584880 64585214 -86198339 + AluSx SINE Alu 1 329 0 2182 115 3 0 chr11 64585954 64586266 -86197287 + AluSq SINE Alu 1 313 0 652 206 43 0 chr11 64587121 64587262 -86196291 - L1M4 LINE L1 -958 5188 5042 27840 80 12 3 chr11 64587264 64591868 -86191685 - L1PA7 LINE L1 0 6469 1825 3495 130 13 2 chr11 64591868 64592391 -86191162 - L1PA7 LINE L1 -5928 533 5 1154 215 56 0 chr11 64592396 64592684 -86190869 - L1M4 LINE L1 -1097 5049 4746 676 143 9 0 chr11 64592684 64592789 -86190764 - HUERS-P1 LTR ERV1 -6157 106 1 1150 97 0 0 chr11 64592789 64592934 -86190619 - LTR8 LTR ERV1 0 691 547 3664 237 126 44 chr11 64592936 64593035 -86190518 - L1M4 LINE L1 -1390 4756 4667 1586 180 29 0 chr11 64593035 64593313 -86190240 - AluJb SINE Alu -25 287 2 3664 237 126 44 chr11 64593313 64593383 -86190170 - L1M4 LINE L1 -1479 4667 4604 1441 150 103 0 chr11 64593383 64593656 -86189897 + AluSg SINE Alu 1 301 -9 3664 237 126 44 chr11 64593656 64594408 -86189145 - L1M4 LINE L1 -1542 4604 3916 1772 160 4 0 chr11 64594408 64594710 -86188843 + AluSx SINE Alu 1 303 0 3664 237 126 44 chr11 64594710 64595432 -86188121 - L1M4 LINE L1 -2230 3916 2974 3523 207 57 25 chr11 64595430 64596319 -86187234 + L1MC/D LINE L1 4292 5220 -1022 * 877 159 0 0 chr11 64596319 64596451 -86187102 + FLAM_C SINE Alu 1 132 -1 3523 207 57 25 chr11 64596451 64596765 -86186788 + L1MC/D LINE L1 5220 5523 -719 570 226 97 56 chr11 64597058 64597253 -86186300 - MER58A DNA MER1_type -18 206 4 204 51 51 51 chr11 64598121 64598160 -86185393 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 1951 162 26 9 chr11 64598961 64599300 -86184253 - MER7A DNA MER2_type 0 346 4 433 275 36 7 chr11 64599404 64599454 -86184099 - MIR SINE MIR 0 262 215 2146 100 3 3 chr11 64599454 64599753 -86183800 - AluSq SINE Alu -14 299 1 433 275 36 7 chr11 64599753 64599769 -86183784 - MIR SINE MIR -47 215 201 252 0 0 0 chr11 64599769 64599797 -86183756 + (CA)n Simple_repeat Simple_repeat 2 29 0 433 275 36 7 chr11 64599797 64599867 -86183686 - MIR SINE MIR -61 201 121 315 278 69 52 chr11 64600122 64600295 -86183258 + MER5B DNA MER1_type 3 178 0 190 262 60 0 chr11 64601795 64601879 -86181674 + MIR SINE MIR 46 134 -128 215 192 19 19 chr11 64602042 64602094 -86181459 - MIR3 SINE MIR -7 201 150 330 276 72 55 chr11 64602989 64603170 -86180383 + MIR3 SINE MIR 7 190 -18 916 242 84 100 chr11 64605473 64605535 -86178018 - MLT1D LTR MaLR -4 501 440 1724 133 17 10 chr11 64605535 64605836 -86177717 + AluSc SINE Alu 1 303 -6 8213 44 1 1 chr11 64605837 64606806 -86176747 + LTR5 LTR ERVK 1 969 0 916 242 84 100 chr11 64606806 64607250 -86176303 - MLT1D LTR MaLR -64 441 1 2106 101 0 11 chr11 64607617 64607931 -86175622 - AluSp SINE Alu 0 311 1 6988 59 153 0 chr11 64608451 64609386 -86174167 - L1PA7 LINE L1 -2 6152 5186 245 286 26 39 chr11 64609662 64609739 -86173814 + MER5B DNA MER1_type 1 76 -102 1970 89 33 10 chr11 64610028 64610330 -86173223 + AluSc SINE Alu 1 309 0 667 191 135 11 chr11 64610366 64610544 -86173009 + L1MB4 LINE L1 5981 6180 0 680 262 157 59 chr11 64611328 64611578 -86171975 + HAL1 LINE L1 1025 1249 -1258 1697 148 42 7 chr11 64611578 64611861 -86171692 + AluJb SINE Alu 1 293 -19 680 262 157 59 chr11 64611861 64612286 -86171267 + HAL1 LINE L1 1249 1766 -741 247 267 60 26 chr11 64612578 64612694 -86170859 - L2 LINE L2 -221 3051 2932 598 218 24 35 chr11 64612840 64613010 -86170543 - MER20 DNA MER1_type 0 219 52 1962 104 14 21 chr11 64613477 64613765 -86169788 + AluSx SINE Alu 6 291 -21 398 305 77 9 chr11 64614543 64614691 -86168862 + MIR SINE MIR 11 182 -80 408 234 47 31 chr11 64614691 64614819 -86168734 - MER94 DNA DNA -3 131 2 398 305 77 9 chr11 64614819 64614903 -86168650 + MIR SINE MIR 182 259 -3 754 158 89 25 chr11 64614904 64615107 -86168446 + L1MA9 LINE L1 6097 6312 0 1944 140 0 10 chr11 64615233 64615547 -86168006 + AluJb SINE Alu 1 311 -1 446 253 191 16 chr11 64615784 64615978 -86167575 - MIR SINE MIR -21 241 14 180 111 0 0 chr11 64617252 64617279 -86166274 + (T)n Simple_repeat Simple_repeat 1 27 0 532 312 73 42 chr11 64617399 64617784 -86165769 + L2 LINE L2 2889 3285 -28 2102 85 3 10 chr11 64617887 64618015 -86165538 + AluSg SINE Alu 1 128 -182 423 0 0 0 chr11 64618015 64618062 -86165491 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2102 85 3 10 chr11 64618062 64618226 -86165327 + AluSg SINE Alu 128 291 -19 2242 89 0 0 chr11 64618268 64618561 -86164992 + AluSx SINE Alu 4 296 -16 217 279 29 58 chr11 64618572 64618676 -86164877 - MIR SINE MIR -113 149 49 27 29 0 0 chr11 64618837 64618871 -86164682 + AT_rich Low_complexity Low_complexity 1 34 0 2136 106 0 13 chr11 64618977 64619310 -86164243 + AluSx SINE Alu 1 312 0 289 250 33 0 chr11 64619448 64619540 -86164013 + GA-rich Low_complexity Low_complexity 1 95 0 387 0 0 0 chr11 64620810 64620853 -86162700 + (TG)n Simple_repeat Simple_repeat 2 44 0 1666 142 10 51 chr11 64620853 64621149 -86162404 - AluJo SINE Alu -28 284 1 198 0 0 0 chr11 64621561 64621583 -86161970 + (T)n Simple_repeat Simple_repeat 1 22 0 253 208 0 0 chr11 64622028 64622081 -86161472 + (CA)n Simple_repeat Simple_repeat 1 53 0 2076 113 0 3 chr11 64622098 64622398 -86161155 - AluSx SINE Alu -13 299 1 2077 121 0 0 chr11 64622585 64622874 -86160679 - AluSx SINE Alu -23 289 1 1985 118 0 0 chr11 64623087 64623374 -86160179 - AluSq SINE Alu -3 310 24 1841 127 0 4 chr11 64623542 64623810 -86159743 + AluSx SINE Alu 16 282 -30 521 273 7 0 chr11 64623930 64624073 -86159480 - FRAM SINE Alu -32 144 1 310 330 23 0 chr11 64624340 64624428 -86159125 - L1MC4 LINE L1 -1339 6703 6614 380 267 47 0 chr11 64624440 64624526 -86159027 - L1MC4 LINE L1 -1339 6703 6614 345 344 0 0 chr11 64624446 64624536 -86159017 + L1MC4 LINE L1 6614 6703 -1339 * 693 190 16 0 chr11 64624539 64624660 -86158893 - FLAM_C SINE Alu -19 124 2 557 162 7 63 chr11 64625803 64625945 -86157608 - MER96B DNA MER1_type? -238 179 46 524 257 87 47 chr11 64626212 64626465 -86157088 - ORSL DNA AcHobo 0 275 13 15698 193 14 11 chr11 64626467 64627374 -86156179 + LTR10B-int LTR ERV1 797 1700 -6085 3411 193 35 59 chr11 64627374 64628351 -86155202 + LTR5 LTR ERVK 2 954 -15 15698 193 14 11 chr11 64628351 64630766 -86152787 + LTR10B-int LTR ERV1 1700 4112 -3673 327 269 0 0 chr11 64630754 64630832 -86152721 + LTR10B-int LTR ERV1 1414 1491 -5405 * 12165 252 34 34 chr11 64630827 64634229 -86149324 + LTR10B-int LTR ERV1 4099 7500 -285 2883 169 27 51 chr11 64634230 64634851 -86148702 + LTR10E LTR ERV1 1 609 0 1486 216 0 11 chr11 64634859 64635142 -86148411 + LTR10B-int LTR ERV1 6370 6649 0 1472 238 135 30 chr11 64635142 64635637 -86147916 + LTR10B LTR ERV1 1 547 0 2960 108 29 2 chr11 64635637 64636082 -86147471 + MER51-int LTR ERV1 1039 1495 -6321 235 229 0 0 chr11 64636098 64636146 -86147407 + MER4A LTR ERV1 51 98 -566 746 134 59 67 chr11 64636151 64636353 -86147200 + MER4A LTR ERV1 276 534 -130 9123 93 61 14 chr11 64636353 64637140 -86146413 + MER51B-int LTR ERV1 1802 2551 -5265 2142 119 0 25 chr11 64637140 64637458 -86146095 + AluSg SINE Alu 1 310 0 9123 93 61 14 chr11 64637458 64638128 -86145425 + MER51B-int LTR ERV1 2551 3327 -4489 1869 135 79 64 chr11 64638110 64638240 -86145313 + MER51B-int LTR ERV1 2829 2956 -2990 * 2463 91 0 0 chr11 64638240 64638549 -86145004 + AluSc SINE Alu 1 309 0 1869 135 79 64 chr11 64638549 64638898 -86144655 + MER51B-int LTR ERV1 2956 3172 -2774 * 2082 105 15 8 chr11 64638878 64639283 -86144270 + MER51B-int LTR ERV1 2211 2662 -2555 * 7964 132 28 5 chr11 64639260 64640915 -86142638 + MER51B-int LTR ERV1 5407 7147 -390 625 207 22 7 chr11 64640917 64641052 -86142501 + LTR54B LTR ERV1 5 141 -357 2023 153 64 3 chr11 64641052 64641378 -86142175 + MER51B-int LTR ERV1 7470 7815 -1 2634 109 50 0 chr11 64641380 64641739 -86141814 + MER51B LTR ERV1 1 377 0 1792 166 3 7 chr11 64641739 64642034 -86141519 + AluJb SINE Alu 19 312 0 442 238 32 0 chr11 64642036 64642162 -86141391 + L1M4 LINE L1 2767 2896 -3250 2363 104 3 0 chr11 64642513 64642822 -86140731 - AluSx SINE Alu -2 310 1 1435 152 7 2 chr11 64642883 64643153 -86140400 - L1PA15-16 LINE L1 -3836 3013 2738 1426 234 44 3 chr11 64643143 64643506 -86140047 + L1P LINE L1 4779 5156 -990 * 523 128 13 0 chr11 64644759 64644837 -86138716 + MADE1 DNA Mariner 1 79 -1 5854 138 29 2 chr11 64645418 64646640 -86136913 + L1PB1 LINE L1 4893 6149 -2 2782 186 29 4 chr11 64646651 64647210 -86136343 - L1MC1 LINE L1 -281 6052 5480 218 361 28 0 chr11 64647464 64647572 -86135981 + MIR SINE MIR 73 183 -79 2332 232 46 48 chr11 64647964 64648688 -86134865 - L1MB2 LINE L1 0 6171 5450 981 113 0 21 chr11 64648978 64649264 -86134289 + (TG)n Simple_repeat Simple_repeat 1 280 0 291 319 97 9 chr11 64649789 64649902 -86133651 - L2 LINE L2 0 3272 3150 384 290 21 59 chr11 64650523 64650709 -86132844 - MIR SINE MIR -13 249 71 366 293 32 25 chr11 64650923 64651080 -86132473 + MER5B DNA MER1_type 3 160 -18 6171 47 0 0 chr11 64651139 64651910 -86131643 - L1P LINE L1 -2360 3786 3016 972 50 8 0 chr11 64651910 64652031 -86131522 + L1P LINE L1 3778 3899 -2247 5464 31 0 0 chr11 64652031 64652634 -86130919 + L1PA4 LINE L1 5548 6151 -4 247 253 13 0 chr11 64654069 64654144 -86129409 + MIR SINE MIR 46 121 -141 1458 213 0 14 chr11 64654233 64654510 -86129043 + AluJb SINE Alu 1 273 -39 735 260 117 67 chr11 64656996 64657283 -86126270 - MLT1D LTR MaLR -4 501 179 2571 51 0 0 chr11 64657283 64657578 -86125975 - AluY SINE Alu -8 303 9 735 260 117 67 chr11 64657578 64657767 -86125786 - MLT1D LTR MaLR -326 179 1 193 246 15 62 chr11 64658697 64658762 -86124791 + MIR SINE MIR 152 213 -49 297 250 13 26 chr11 64658942 64659018 -86124535 + MER5B DNA MER1_type 1 75 -103 526 203 91 7 chr11 64659355 64659498 -86124055 + L1MB4 LINE L1 5981 6135 -45 2064 122 17 0 chr11 64659505 64659793 -86123760 + AluSc SINE Alu 1 293 -16 314 42 0 0 chr11 64660250 64660298 -86123255 - AluSp SINE Alu -1 302 255 1678 81 5 5 chr11 64660298 64660507 -86123046 - AluSp SINE Alu -104 209 1 662 218 109 66 chr11 64661024 64661327 -86122226 + HAL1 LINE L1 1456 1771 -736 238 256 56 32 chr11 64661859 64661984 -86121569 - L2 LINE L2 -213 3059 2932 848 199 41 25 chr11 64662073 64662269 -86121284 - MER20 DNA MER1_type 0 219 21 3049 125 2 7 chr11 64663186 64663619 -86119934 + LTR3 LTR ERVK 1 431 -1 13559 105 31 2 chr11 64663624 64665541 -86118012 + HERVK3 LTR ERVK 39 2011 -5232 1618 116 4 0 chr11 64665541 64665766 -86117787 - LTR3 LTR ERVK -206 226 1 2133 87 0 14 chr11 64665917 64666194 -86117359 + AluY SINE Alu 35 307 -4 322 230 152 70 chr11 64666285 64666432 -86117121 + MIR SINE MIR 11 185 -77 386 232 56 32 chr11 64666432 64666557 -86116996 - MER94 DNA DNA -3 131 4 322 230 152 70 chr11 64666557 64666639 -86116914 + MIR SINE MIR 185 259 -3 1647 169 46 11 chr11 64666855 64667139 -86116414 + AluSx SINE Alu 3 296 -16 406 344 82 23 chr11 64667987 64668292 -86115261 + HAL1 LINE L1 1024 1346 -1161 373 296 189 9 chr11 64668299 64668532 -86115021 + HAL1 LINE L1 1383 1657 -850 2229 88 27 3 chr11 64668539 64668836 -86114717 - AluSg SINE Alu -6 304 1 225 0 0 0 chr11 64668860 64668885 -86114668 + (T)n Simple_repeat Simple_repeat 1 25 0 5081 180 26 47 chr11 64668983 64669635 -86113918 + L1PA16 LINE L1 4415 5079 -1087 367 174 14 0 chr11 64669635 64669704 -86113849 + MER41D LTR ERV1 42 111 -446 5081 180 26 47 chr11 64669704 64670774 -86112779 + L1PA16 LINE L1 5079 6164 -2 1888 142 14 3 chr11 64670835 64671123 -86112430 + AluSx SINE Alu 2 292 -20 258 345 54 6 chr11 64671123 64671291 -86112262 + HAL1 LINE L1 2328 2503 -4 211 304 36 43 chr11 64671637 64671682 -86111871 - L2 LINE L2 -221 3051 3007 3357 169 3 35 chr11 64671682 64672257 -86111296 + MER41D LTR ERV1 1 557 0 211 304 36 43 chr11 64672257 64672349 -86111204 - L2 LINE L2 -265 3007 2915 461 222 78 130 chr11 64672507 64672737 -86110816 - MER20 DNA MER1_type -1 218 1 5209 140 46 79 chr11 64673663 64673881 -86109672 - L1MA3 LINE L1 -1 6304 6080 2338 106 0 0 chr11 64673881 64674174 -86109379 - AluSc SINE Alu -16 293 1 5209 140 46 79 chr11 64674174 64675117 -86108436 - L1MA3 LINE L1 -225 6080 5184 471 224 6 109 chr11 64676047 64676221 -86107332 - MER20 DNA MER1_type 0 219 64 453 258 73 7 chr11 64677421 64677572 -86105981 + MIR SINE MIR 11 171 -91 300 326 23 23 chr11 64677574 64677703 -86105850 - MER94 DNA DNA -4 130 2 434 288 132 24 chr11 64678134 64678346 -86105207 - MIR SINE MIR -6 256 22 2052 121 31 0 chr11 64678769 64679059 -86104494 + AluSx SINE Alu 1 299 -13 2010 138 0 7 chr11 64679665 64679961 -86103592 - AluSc SINE Alu -15 294 1 349 360 73 29 chr11 64680082 64680465 -86103088 + L2 LINE L2 2884 3298 -15 2310 99 3 0 chr11 64680541 64680833 -86102720 - AluSp SINE Alu -20 293 1 243 227 13 40 chr11 64681366 64681441 -86102112 + GA-rich Low_complexity Low_complexity 3 75 0 728 157 0 0 chr11 64681823 64681931 -86101622 - AluSq/x SINE Alu -203 109 2 381 219 0 0 chr11 64682787 64682947 -86100606 + (CA)n Simple_repeat Simple_repeat 1 160 0 234 195 0 0 chr11 64682972 64683059 -86100494 + (CA)n Simple_repeat Simple_repeat 2 88 0 189 0 0 0 chr11 64683470 64683491 -86100062 + (A)n Simple_repeat Simple_repeat 1 21 0 1241 224 44 29 chr11 64683541 64683884 -86099669 + L1MB2 LINE L1 5822 6169 -2 198 0 0 0 chr11 64684075 64684097 -86099456 + (T)n Simple_repeat Simple_repeat 1 22 0 287 136 0 91 chr11 64684622 64684688 -86098865 + Zaphod DNA AcHobo 51 110 -3921 2606 122 39 3 chr11 64685413 64685797 -86097756 - MER48 LTR ERV1 0 398 1 1314 75 52 0 chr11 64685797 64685971 -86097582 - HERVH48 LTR ERV1 0 6654 6472 * 9476 120 4 0 chr11 64685959 64687304 -86096249 - HERVH48 LTR ERV1 -988 5666 4317 296 284 52 0 chr11 64687729 64687863 -86095690 + L1M4 LINE L1 2756 2896 -3250 4908 103 10 26 chr11 64688009 64688466 -86095087 - LTR2B-int LTR ERV1 -2763 2454 2012 2066 128 10 0 chr11 64688466 64688772 -86094781 + AluSc SINE Alu 1 309 0 4908 103 10 26 chr11 64688772 64689091 -86094462 - LTR2B-int LTR ERV1 -3205 2012 1690 969 141 12 6 chr11 64689084 64689247 -86094306 + LTR10D-int LTR ERV1 944 1107 -5491 * 294 73 0 0 chr11 64689269 64689310 -86094243 + (TCTCCC)n Simple_repeat Simple_repeat 2 42 0 196 30 61 0 chr11 64690779 64690812 -86092741 + (TG)n Simple_repeat Simple_repeat 1 35 0 262 202 12 0 chr11 64691105 64691189 -86092364 + (CGTG)n Simple_repeat Simple_repeat 1 85 0 279 164 0 0 chr11 64691237 64691298 -86092255 + (TG)n Simple_repeat Simple_repeat 1 61 0 225 320 24 8 chr11 64691301 64691426 -86092127 + G-rich Low_complexity Low_complexity 2 128 0 4259 105 51 75 chr11 64693200 64694545 -86089008 + SVA Other Other 1 868 -520 695 67 8 37 chr11 64694562 64694696 -86088857 + SVA Other Other 665 794 -592 5943 65 44 40 chr11 64694709 64695701 -86087852 + SVA Other Other 433 1428 0 655 75 87 16 chr11 64695701 64695849 -86087704 + LTR10D-int LTR ERV1 551 1289 -4320 2035 163 108 37 chr11 64695849 64696412 -86087141 + LTR10D-int LTR ERV1 3074 3676 -2922 * 14848 136 46 19 chr11 64696409 64696554 -86086999 + LTR10D-int LTR ERV1 3815 3955 -2643 2027 132 0 0 chr11 64696554 64696841 -86086712 + AluSx SINE Alu 1 287 -25 14848 136 46 19 chr11 64696841 64699406 -86084147 + LTR10D-int LTR ERV1 3955 6598 0 873 109 0 29 chr11 64699488 64699625 -86083928 - LTR2B-int LTR ERV1 -2431 4167 4035 * 8317 151 130 63 chr11 64699615 64701032 -86082521 - LTR2B-int LTR ERV1 -4362 2236 916 3344 99 44 14 chr11 64701032 64701528 -86082025 + LTR10D LTR ERV1 3 513 0 8317 151 130 63 chr11 64701528 64701829 -86081724 - LTR2B-int LTR ERV1 -5682 916 637 3759 66 45 0 chr11 64701829 64702298 -86081255 - LTR2B LTR ERV1 0 490 1 8317 151 130 63 chr11 64702298 64703370 -86080183 - LTR2B-int LTR ERV1 -5961 637 1 2768 123 2 10 chr11 64703374 64703779 -86079774 - MER4A LTR ERV1 -2 662 261 648 120 0 20 chr11 64703779 64703879 -86079674 - MER4A LTR ERV1 -566 98 1 915 201 89 111 chr11 64703887 64704301 -86079252 - MER4-int LTR ERV1 -5596 1002 598 25879 36 0 0 chr11 64704302 64708209 -86075344 + L1PA4 LINE L1 2261 6172 0 493 241 80 25 chr11 64708671 64708833 -86074720 - L1MB4 LINE L1 -27 6153 5983 216 313 0 16 chr11 64709165 64709229 -86074324 + MER5B DNA MER1_type 108 170 -8 218 254 14 56 chr11 64709407 64709478 -86074075 - MIR SINE MIR -44 218 151 958 248 152 63 chr11 64710423 64710883 -86072670 + MLT1D LTR MaLR 1 501 -4 195 42 0 0 chr11 64711782 64711806 -86071747 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 1461 167 48 27 chr11 64713212 64713364 -86070189 - AluJb SINE Alu -13 299 152 333 0 0 0 chr11 64713364 64713401 -86070152 + (TG)n Simple_repeat Simple_repeat 2 38 0 1461 167 48 27 chr11 64713401 64713541 -86070012 - AluJb SINE Alu -160 152 1 220 317 124 7 chr11 64713553 64713698 -86069855 - MIR SINE MIR -55 207 46 2160 97 13 3 chr11 64713830 64714138 -86069415 + AluSp SINE Alu 1 311 -2 307 345 30 24 chr11 64715495 64715663 -86067890 - MER5B DNA MER1_type -6 172 4 453 267 67 62 chr11 64715857 64716052 -86067501 + MIR SINE MIR 50 245 -17 7929 118 27 11 chr11 64716622 64717869 -86065684 + HUERS-P3b LTR ERV1 2661 2827 -2188 377 80 0 0 chr11 64717860 64717910 -86065643 + HUERS-P3b LTR ERV1 5330 5379 -2039 * 23930 125 14 84 chr11 64717911 64722465 -86061088 - L1P LINE L1 -1901 4245 12 2027 162 27 44 chr11 64722566 64723237 -86060316 - L1MC4a LINE L1 -372 5794 5104 338 125 0 0 chr11 64723260 64723308 -86060245 - Alu SINE Alu -254 48 1 383 250 12 0 chr11 64723308 64723418 -86060135 - L1MC4a LINE L1 -1763 4383 4272 294 271 58 13 chr11 64723423 64723578 -86059975 - L1M1 LINE L1 -3905 3660 3499 * 5856 101 31 13 chr11 64723563 64723726 -86059827 - L1MA2 LINE L1 0 6304 6145 255 31 0 0 chr11 64723726 64723758 -86059795 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2229 71 0 0 chr11 64723758 64724040 -86059513 - AluY SINE Alu -29 282 1 5856 101 31 13 chr11 64724040 64724777 -86058776 - L1MA2 LINE L1 -158 6146 5387 2424 130 72 5 chr11 64725320 64725721 -86057832 - MSTA LTR MaLR 0 428 1 642 254 43 99 chr11 64725728 64725794 -86057759 - MLT1J LTR MaLR 0 511 443 1996 111 3 0 chr11 64725794 64726131 -86057422 - AluSq SINE Alu 0 313 1 642 254 43 99 chr11 64726131 64726367 -86057186 - MLT1J LTR MaLR -68 443 226 2204 99 0 3 chr11 64726770 64727072 -86056481 + AluSq SINE Alu 1 301 -12 1792 161 3 7 chr11 64727260 64727564 -86055989 - AluJb SINE Alu -9 303 1 1106 238 80 123 chr11 64727877 64728003 -86055550 + LTR33 LTR ERVL 47 177 -344 1888 119 7 7 chr11 64728003 64728289 -86055264 + AluSx SINE Alu 3 288 -24 1106 238 80 123 chr11 64728289 64728650 -86054903 + LTR33 LTR ERVL 177 513 -8 189 0 0 0 chr11 64729281 64729302 -86054251 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 41 82 0 0 chr11 64729719 64729816 -86053737 + AT_rich Low_complexity Low_complexity 1 97 0 302 225 108 62 chr11 64729816 64729945 -86053608 - L1MCa LINE L1 -4335 2091 1957 269 109 22 0 chr11 64729983 64730029 -86053524 + (CA)n Simple_repeat Simple_repeat 2 48 0 671 259 101 13 chr11 64730876 64731104 -86052449 + MIR SINE MIR 14 261 -1 308 290 10 50 chr11 64731851 64731951 -86051602 - L2 LINE L2 -30 3283 3188 2085 128 14 0 chr11 64732259 64732555 -86050998 + AluSx SINE Alu 1 300 -12 332 296 24 8 chr11 64732887 64733012 -86050541 - L2 LINE L2 -873 2441 2315 661 98 33 0 chr11 64733050 64733142 -86050411 + AluS SINE Alu 2 96 -216 502 328 158 31 chr11 64733199 64733623 -86049930 + L2 LINE L2 2836 3313 0 259 352 74 33 chr11 64733624 64733988 -86049565 - L2 LINE L2 -1007 2307 1929 7023 85 13 35 chr11 64734022 64734379 -86049174 - L1MA3 LINE L1 0 6305 5942 2374 106 0 6 chr11 64734379 64734690 -86048863 - AluSc SINE Alu 0 309 1 7023 85 13 35 chr11 64734690 64735382 -86048171 - L1MA3 LINE L1 -363 5942 5279 2081 110 50 0 chr11 64735386 64735667 -86047886 + AluSq SINE Alu 1 295 -18 186 290 16 0 chr11 64735909 64735971 -86047582 + L3 LINE CR1 808 870 -707 1910 121 4 4 chr11 64736420 64736693 -86046860 + AluSq SINE Alu 38 310 -3 3109 126 33 66 chr11 64737192 64737765 -86045788 + MLT2B3 LTR ERVL 1 554 0 625 194 29 29 chr11 64737986 64738125 -86045428 - MER58B DNA MER1_type -3 338 200 2145 106 3 30 chr11 64738143 64738444 -86045109 + AluSc SINE Alu 1 293 -16 620 180 31 0 chr11 64738868 64738996 -86044557 - MER58B DNA MER1_type -134 207 76 2468 74 6 0 chr11 64738997 64739308 -86044245 + AluSq SINE Alu 1 313 0 4130 33 19 0 chr11 64740556 64741037 -86042516 + LTR2B LTR ERV1 1 490 0 799 127 30 0 chr11 64741153 64741287 -86042266 + L1PA13 LINE L1 6026 6163 0 6671 118 12 10 chr11 64741373 64742340 -86041213 + LTR5 LTR ERVK 1 969 0 2168 91 0 82 chr11 64742461 64742801 -86040752 + AluSx SINE Alu 1 312 0 2296 105 3 0 chr11 64743092 64743396 -86040157 + AluSq SINE Alu 1 305 -8 236 264 0 0 chr11 64743776 64743829 -86039724 + HAL1 LINE L1 1686 1738 -769 2144 134 0 3 chr11 64743846 64744152 -86039401 + AluSg SINE Alu 1 305 -5 956 79 29 14 chr11 64744156 64744296 -86039257 - MLT2B2 LTR ERVL 0 515 374 1658 161 0 4 chr11 64744481 64744735 -86038818 + AluJb SINE Alu 37 289 -23 1999 103 16 29 chr11 64745189 64745500 -86038053 + AluSc SINE Alu 1 307 -2 450 83 0 0 chr11 64746201 64746273 -86037280 + (ATG)n Simple_repeat Simple_repeat 2 73 0 1848 176 3 7 chr11 64747207 64747513 -86036040 - AluJb SINE Alu -7 305 1 4291 131 34 47 chr11 64747604 64748204 -86035349 - LTR1 LTR ERV1 0 785 195 2093 107 4 0 chr11 64748204 64748514 -86035039 - AluY SINE Alu 0 311 1 4291 131 34 47 chr11 64748514 64748707 -86034846 - LTR1 LTR ERV1 -590 195 1 2034 154 0 10 chr11 64749121 64749433 -86034120 + AluSx SINE Alu 1 309 -3 334 229 38 69 chr11 64749728 64749859 -86033694 + HAL1 LINE L1 47 173 -2334 383 240 146 99 chr11 64749970 64750354 -86033199 + MLT1J LTR MaLR 2 403 -108 288 53 0 0 chr11 64750368 64750406 -86033147 + (TTG)n Simple_repeat Simple_repeat 2 39 0 294 315 70 59 chr11 64750493 64750763 -86032790 + HAL1 LINE L1 344 616 -1891 1798 153 103 103 chr11 64750942 64751438 -86032115 + MLT1D LTR MaLR 1 496 -9 2323 84 3 3 chr11 64751674 64751971 -86031582 - AluSp SINE Alu -16 297 1 3075 157 113 95 chr11 64753094 64753432 -86030121 - MER4D LTR ERV1 -7 896 566 1999 78 42 42 chr11 64753432 64753738 -86029815 + AluSx SINE Alu 7 312 0 3075 157 113 95 chr11 64753738 64754210 -86029343 - MER4D LTR ERV1 -337 566 71 251 209 104 0 chr11 64754487 64754554 -86028999 - MIR SINE MIR -94 168 95 1854 149 0 27 chr11 64754761 64755057 -86028496 + AluJb SINE Alu 6 293 -19 2396 89 0 3 chr11 64755973 64756275 -86027278 - AluY SINE Alu -10 301 1 236 248 40 99 chr11 64756328 64756429 -86027124 + MER5B DNA MER1_type 80 174 -4 3048 207 83 57 chr11 64756471 64756688 -86026865 - L1ME1 LINE L1 -5 6161 5951 4395 91 10 0 chr11 64756688 64757273 -86026280 - LTR10C LTR ERV1 0 591 1 1628 181 0 0 chr11 64757282 64757547 -86026006 + AluSx SINE Alu 32 296 -16 3048 207 83 57 chr11 64757547 64757871 -86025682 - L1ME1 LINE L1 -222 5944 5630 2373 102 0 0 chr11 64757871 64758174 -86025379 + AluSx SINE Alu 1 303 -9 3048 207 83 57 chr11 64758174 64758228 -86025325 - L1ME1 LINE L1 -536 5630 5579 2224 113 10 0 chr11 64758228 64758529 -86025024 + AluSg SINE Alu 1 304 -6 3048 207 83 57 chr11 64758529 64758693 -86024860 - L1ME1 LINE L1 -587 5579 5421 1760 129 121 4 chr11 64758693 64758973 -86024580 - AluSq SINE Alu 0 313 1 3048 207 83 57 chr11 64758973 64759377 -86024176 - L1ME1 LINE L1 -745 5421 5029 4387 102 59 4 chr11 64759377 64760060 -86023493 - L1MA3 LINE L1 0 6305 5586 3048 207 83 57 chr11 64760060 64760092 -86023461 - L1ME1 LINE L1 -1137 5029 4999 1942 114 0 0 chr11 64760092 64760346 -86023207 - AluSq SINE Alu -59 254 1 3048 207 83 57 chr11 64760346 64760368 -86023185 - L1ME1 LINE L1 -1167 4999 4898 616 224 64 26 chr11 64760371 64760527 -86023026 - MER21B LTR ERV1 -244 619 458 469 100 0 0 chr11 64760529 64760589 -86022964 - MER1B DNA MER1_type -2 331 272 1291 126 28 0 chr11 64760591 64760773 -86022780 - MER1B DNA MER1_type -109 188 2 252 122 0 0 chr11 64760773 64760813 -86022740 - MER21A LTR ERV1 -381 550 511 3378 209 32 23 chr11 64760812 64761229 -86022324 - MER21B LTR ERV1 -148 715 288 2792 142 66 40 chr11 64761229 64761465 -86022088 + LTR64 LTR ERVK 1 229 -329 2169 105 7 13 chr11 64761465 64761769 -86021784 + AluSx SINE Alu 1 302 -10 2792 142 66 40 chr11 64761769 64762076 -86021477 + LTR64 LTR ERVK 229 558 0 3378 209 32 23 chr11 64762076 64762346 -86021207 - MER21B LTR ERV1 -575 288 22 294 304 0 0 chr11 64762346 64762415 -86021138 - MER2 DNA MER2_type -9 336 268 1967 121 54 0 chr11 64762439 64762719 -86020834 + AluSx SINE Alu 1 295 -17 1082 169 0 23 chr11 64762839 64762964 -86020589 - MER2 DNA MER2_type -171 174 48 2675 174 116 50 chr11 64762964 64763201 -86020352 - LTR8A LTR ERV1 0 727 507 2417 77 3 0 chr11 64763201 64763500 -86020053 + AluSx SINE Alu 1 300 -12 2675 174 116 50 chr11 64763500 64763732 -86019821 - LTR8A LTR ERV1 -220 507 292 2460 87 0 6 chr11 64763732 64764044 -86019509 - AluSg SINE Alu 0 310 1 2675 174 116 50 chr11 64764044 64764255 -86019298 - LTR8A LTR ERV1 -435 292 1 1082 169 0 23 chr11 64764255 64764306 -86019247 - MER2 DNA MER2_type -297 48 2 1863 177 40 19 chr11 64764343 64764412 -86019141 - L1MD2 LINE L1 -368 5991 5925 4106 73 24 7 chr11 64764412 64764956 -86018597 - MER41A LTR ERV1 0 554 2 1863 177 40 19 chr11 64764956 64765258 -86018295 - L1MD2 LINE L1 -434 5925 5612 * 2858 164 40 61 chr11 64765255 64765291 -86018262 - L1MDa LINE L1 -3911 2629 2594 2292 117 0 0 chr11 64765291 64765590 -86017963 + AluSx SINE Alu 1 299 -13 2858 164 40 61 chr11 64765590 64766145 -86017408 - L1MDa LINE L1 -3946 2594 2029 2327 94 3 0 chr11 64766145 64766443 -86017110 + AluSq SINE Alu 1 299 -14 2858 164 40 61 chr11 64766443 64766484 -86017069 - L1MDa LINE L1 -4511 2029 1989 1596 154 15 11 chr11 64766484 64766751 -86016802 - AluJo SINE Alu -44 268 1 2858 164 40 61 chr11 64766751 64766822 -86016731 - L1MDa LINE L1 -4551 1989 1939 852 189 50 108 chr11 64766822 64767081 -86016472 + MLT1A2 LTR MaLR 1 244 -130 2204 113 7 0 chr11 64767082 64767375 -86016178 + AluSx SINE Alu 1 295 -17 3778 170 100 31 chr11 64767425 64768122 -86015431 - L1MDa LINE L1 -4597 1943 1161 1699 157 30 33 chr11 64768122 64768422 -86015131 - AluJo SINE Alu -13 299 1 3778 170 100 31 chr11 64768422 64768672 -86014881 - L1MDa LINE L1 -5379 1161 930 315 299 69 28 chr11 64768825 64768969 -86014584 - MIR SINE MIR -10 252 103 182 284 30 0 chr11 64768997 64769064 -86014489 - L2 LINE L2 -280 2992 2924 2518 162 101 14 chr11 64769082 64769587 -86013966 - MER44D DNA MER2_type 0 605 2 2028 91 102 0 chr11 64769719 64769993 -86013560 - AluSx SINE Alu -10 302 1 2260 104 3 0 chr11 64770005 64770303 -86013250 - AluY SINE Alu -12 299 1 6212 21 0 1 chr11 64770402 64771063 -86012490 - SVA Other Other -1 1385 726 1991 105 0 41 chr11 64772005 64772347 -86011206 - AluSx SINE Alu 0 330 1 362 255 13 54 chr11 64772703 64772852 -86010701 - MER5B DNA MER1_type -31 147 5 2432 88 0 3 chr11 64772872 64773180 -86010373 + AluSx SINE Alu 1 307 -5 4022 197 60 99 chr11 64773350 64773935 -86009618 + Zaphod DNA AcHobo 10 616 -3415 1200 154 130 24 chr11 64773935 64774006 -86009547 - MER33 DNA MER1_type -2261 324 262 1914 83 4 8 chr11 64774006 64774246 -86009307 + AluSq SINE Alu 56 294 -19 1200 154 130 24 chr11 64774246 64774467 -86009086 - MER33 DNA MER1_type -2323 262 1 4022 197 60 99 chr11 64774467 64774808 -86008745 + Zaphod DNA AcHobo 616 969 -3062 2326 101 13 0 chr11 64774808 64775116 -86008437 - AluSx SINE Alu 0 312 1 4022 197 60 99 chr11 64775116 64775571 -86007982 + Zaphod DNA AcHobo 969 1338 -2693 3281 208 75 59 chr11 64775583 64775978 -86007575 + Zaphod DNA AcHobo 1831 2218 -1813 1653 159 52 10 chr11 64775978 64776268 -86007285 - AluJo SINE Alu -10 302 1 2425 90 3 0 chr11 64776272 64776572 -86006981 - AluSg SINE Alu -9 301 1 3281 208 75 59 chr11 64776572 64777232 -86006321 + Zaphod DNA AcHobo 2220 2908 -1123 23 0 0 0 chr11 64777240 64777263 -86006290 + AT_rich Low_complexity Low_complexity 1 23 0 362 356 0 0 chr11 64777791 64778028 -86005525 + A-rich Low_complexity Low_complexity 1 237 0 22 0 0 0 chr11 64778912 64778934 -86004619 + AT_rich Low_complexity Low_complexity 1 22 0 202 83 0 42 chr11 64778971 64779019 -86004534 + (CAAAA)n Simple_repeat Simple_repeat 5 50 0 2321 69 0 50 chr11 64779102 64779405 -86004148 - AluY SINE Alu -23 288 1 2946 208 71 38 chr11 64779405 64780047 -86003506 + Zaphod DNA AcHobo 2953 3633 -398 2224 111 0 7 chr11 64780047 64780353 -86003200 + AluSx SINE Alu 1 304 -8 2946 208 71 38 chr11 64780353 64780595 -86002958 + Zaphod DNA AcHobo 3633 3866 -165 2640 156 84 83 chr11 64780601 64780973 -86002580 + L1MA9 LINE L1 5572 5942 -349 2297 101 7 0 chr11 64780973 64781269 -86002284 + AluSq SINE Alu 9 306 -7 2640 156 84 83 chr11 64781269 64781450 -86002103 + L1MA9 LINE L1 5942 6121 -170 2277 112 0 0 chr11 64781450 64781746 -86001807 + AluSx SINE Alu 1 296 -16 2126 125 0 7 chr11 64781746 64782034 -86001519 + AluSg1 SINE Alu 1 286 -23 2640 156 84 83 chr11 64782034 64782156 -86001397 + L1MA9 LINE L1 6121 6234 -57 1970 131 10 10 chr11 64782156 64782454 -86001099 + AluSx SINE Alu 1 298 -14 2640 156 84 83 chr11 64782454 64782487 -86001066 + L1MA9 LINE L1 6234 6265 -26 499 169 208 54 chr11 64782505 64782635 -86000918 + Zaphod DNA AcHobo 3882 4031 0 227 190 127 0 chr11 64782670 64782749 -86000804 - L1ME LINE L1 -706 5460 5372 660 206 0 44 chr11 64782852 64782988 -86000565 - FLAM_A SINE Alu -3 130 1 980 98 0 0 chr11 64783101 64783233 -86000320 + AluSq/x SINE Alu 1 132 -180 2175 96 0 0 chr11 64783235 64783528 -86000025 + AluY SINE Alu 1 293 -18 2023 125 7 0 chr11 64783542 64783838 -85999715 + AluSp SINE Alu 1 298 -15 2235 102 0 0 chr11 64783840 64784143 -85999410 + AluSg SINE Alu 1 303 -7 25 0 0 0 chr11 64784143 64784168 -85999385 + AT_rich Low_complexity Low_complexity 1 25 0 255 114 0 0 chr11 64784170 64784205 -85999348 + AluS SINE Alu 51 85 -218 632 248 12 25 chr11 64784210 64784224 -85999329 - L1ME LINE L1 -437 5733 5720 1652 114 151 17 chr11 64784224 64784523 -85999030 + MER44D DNA MER2_type 1 609 0 632 248 12 25 chr11 64784523 64784669 -85998884 - L1ME LINE L1 -450 5720 5575 5367 149 22 14 chr11 64784669 64785630 -85997923 - LTR5 LTR ERVK 0 969 1 12341 73 3 1 chr11 64785633 64787178 -85996375 - HERVK LTR ERVK -5 7238 5691 189 171 0 0 chr11 64787436 64787471 -85996082 + (CAG)n Simple_repeat Simple_repeat 3 37 0 1007 134 0 6 chr11 64787611 64787768 -85995785 + SVA Other Other 1096 1251 -135 2444 49 0 7 chr11 64787849 64788154 -85995399 + AluY SINE Alu 1 303 -8 549 0 0 0 chr11 64791605 64791666 -85991887 + (TA)n Simple_repeat Simple_repeat 2 62 0 1445 153 5 16 chr11 64791727 64792008 -85991545 - HERVK LTR ERVK -1538 6533 5533 2228 81 30 0 chr11 64792012 64792308 -85991245 + AluSg SINE Alu 1 305 -5 37951 65 9 7 chr11 64792503 64797289 -85986264 - HERVK LTR ERVK -1711 5532 733 4957 115 18 20 chr11 64797353 64798112 -85985441 - HERVK LTR ERVK -6485 758 1 426 156 0 13 chr11 64798112 64798189 -85985364 - LTR5 LTR ERVK 0 969 894 1520 58 0 0 chr11 64798189 64798379 -85985174 + AluYb8 SINE Alu 1 190 -128 4612 138 44 42 chr11 64798379 64799274 -85984279 - LTR5 LTR ERVK -73 896 1 1367 209 42 34 chr11 64799280 64799504 -85984049 + Zaphod DNA AcHobo 3415 3636 -395 2642 29 0 0 chr11 64799504 64799815 -85983738 + AluYa5 SINE Alu 1 311 0 1367 209 42 34 chr11 64799815 64799835 -85983718 + Zaphod DNA AcHobo 3636 3654 -377 1825 118 38 7 chr11 64799835 64800124 -85983429 + AluSx SINE Alu 1 298 -14 1367 209 42 34 chr11 64800124 64800195 -85983358 + Zaphod DNA AcHobo 3654 3723 -308 423 98 0 0 chr11 64800195 64800256 -85983297 + (TG)n Simple_repeat Simple_repeat 2 62 0 1367 209 42 34 chr11 64800256 64800345 -85983208 + Zaphod DNA AcHobo 3723 3824 -207 567 100 0 0 chr11 64800345 64800425 -85983128 + AluY SINE Alu 216 295 -16 1950 129 0 7 chr11 64800427 64800713 -85982840 + AluSg1 SINE Alu 3 286 -23 413 156 45 136 chr11 64800716 64800836 -85982717 + L1MA9 LINE L1 6126 6234 -60 1816 133 10 10 chr11 64800836 64801130 -85982423 + AluSx SINE Alu 1 294 -18 413 156 45 136 chr11 64801130 64801163 -85982390 + L1MA9 LINE L1 6234 6268 -26 499 169 208 54 chr11 64801181 64801311 -85982242 + Zaphod DNA AcHobo 3882 4031 0 676 191 0 44 chr11 64801533 64801669 -85981884 - FLAM_A SINE Alu -3 130 1 980 98 0 0 chr11 64801778 64801910 -85981643 + AluSq/x SINE Alu 1 132 -180 2175 96 0 0 chr11 64801912 64802205 -85981348 + AluY SINE Alu 1 293 -18 2023 125 7 0 chr11 64802219 64802515 -85981038 + AluSp SINE Alu 1 298 -15 2235 102 0 0 chr11 64802517 64802820 -85980733 + AluSg SINE Alu 1 303 -7 25 0 0 0 chr11 64802820 64802845 -85980708 + AT_rich Low_complexity Low_complexity 1 25 0 255 114 0 0 chr11 64802847 64802882 -85980671 + AluS SINE Alu 51 85 -218 632 248 12 25 chr11 64802887 64802901 -85980652 - L1ME LINE L1 -437 5733 5720 1652 114 151 17 chr11 64802901 64803200 -85980353 + MER44D DNA MER2_type 1 609 0 632 248 12 25 chr11 64803200 64803346 -85980207 - L1ME LINE L1 -450 5720 5575 5367 149 22 14 chr11 64803346 64804307 -85979246 - LTR5 LTR ERVK 0 969 1 12341 73 3 1 chr11 64804310 64805855 -85977698 - HERVK LTR ERVK -5 7238 5691 189 171 0 0 chr11 64806113 64806148 -85977405 + (CAG)n Simple_repeat Simple_repeat 3 37 0 1007 134 0 6 chr11 64806288 64806445 -85977108 + SVA Other Other 1096 1251 -135 2444 49 0 7 chr11 64806526 64806831 -85976722 + AluY SINE Alu 1 303 -8 531 0 0 0 chr11 64810282 64810341 -85973212 + (TA)n Simple_repeat Simple_repeat 2 60 0 2389 62 0 46 chr11 64811774 64812097 -85971456 - AluY SINE Alu -3 308 1 2880 209 70 37 chr11 64812097 64812739 -85970814 + Zaphod DNA AcHobo 2953 3633 -398 2099 111 0 7 chr11 64812739 64813045 -85970508 + AluSx SINE Alu 1 304 -8 2880 209 70 37 chr11 64813045 64813287 -85970266 + Zaphod DNA AcHobo 3633 3866 -165 2599 155 85 82 chr11 64813293 64813665 -85969888 + L1MA9 LINE L1 5572 5941 -371 2175 101 7 0 chr11 64813665 64813961 -85969592 + AluSq SINE Alu 9 306 -7 2599 155 85 82 chr11 64813961 64814142 -85969411 + L1MA9 LINE L1 5941 6120 -192 2150 112 0 0 chr11 64814142 64814438 -85969115 + AluSx SINE Alu 1 296 -16 2000 125 0 7 chr11 64814438 64814726 -85968827 + AluSg1 SINE Alu 1 286 -23 2599 155 85 82 chr11 64814726 64814848 -85968705 + L1MA9 LINE L1 6120 6254 -58 1849 131 10 10 chr11 64814848 64815146 -85968407 + AluSx SINE Alu 1 298 -14 2599 155 85 82 chr11 64815146 64815162 -85968391 + L1MA9 LINE L1 6254 6268 -44 499 169 208 54 chr11 64815197 64815327 -85968226 + Zaphod DNA AcHobo 3882 4031 0 676 191 0 44 chr11 64815549 64815685 -85967868 - FLAM_A SINE Alu -3 130 1 1974 122 10 0 chr11 64815797 64816092 -85967461 + AluSq SINE Alu 1 298 -15 2163 117 0 0 chr11 64816094 64816402 -85967151 + AluSg SINE Alu 1 308 -2 246 143 0 0 chr11 64816419 64816454 -85967099 + Alu SINE Alu 51 85 -218 914 254 35 18 chr11 64816459 64816473 -85967080 - L1ME LINE L1 -437 5733 5721 1505 103 111 143 chr11 64816473 64816823 -85966730 + MER44D DNA MER2_type 1 609 0 914 254 35 18 chr11 64816823 64817092 -85966461 - L1ME LINE L1 -449 5721 5445 2143 104 0 39 chr11 64817106 64817415 -85966138 - AluSx SINE Alu -15 297 1 760 260 152 55 chr11 64817416 64817524 -85966029 + L2 LINE L2 2688 2784 -529 454 276 15 15 chr11 64817524 64817658 -85965895 + MER94 DNA DNA 1 134 0 760 260 152 55 chr11 64817658 64818070 -85965483 + L2 LINE L2 2784 3279 -34 1681 179 51 12 chr11 64818134 64818469 -85965084 - MER7A DNA MER2_type 0 346 1 183 212 0 0 chr11 64818503 64818536 -85965017 - MIR SINE MIR -65 197 165 364 266 10 125 chr11 64818541 64818597 -85964956 + MER5A DNA MER1_type 19 80 -109 2155 111 0 10 chr11 64818597 64818904 -85964649 + AluSx SINE Alu 1 304 -8 364 266 10 125 chr11 64818904 64819039 -85964514 + MER5A DNA MER1_type 80 188 -1 272 188 158 40 chr11 64819039 64819129 -85964424 - MIR SINE MIR -107 155 54 735 169 0 0 chr11 64822689 64822813 -85960740 + AluJb SINE Alu 189 312 0 507 191 0 56 chr11 64825019 64825145 -85958408 + LTR8A LTR ERV1 104 222 -505 2242 81 3 3 chr11 64825145 64825441 -85958112 + AluSc SINE Alu 3 298 -11 188 274 81 0 chr11 64825969 64826031 -85957522 + MIR SINE MIR 87 153 -109 1841 127 3 3 chr11 64826418 64826702 -85956851 + AluSc SINE Alu 23 306 -3 209 339 0 0 chr11 64827168 64827227 -85956326 + CT-rich Low_complexity Low_complexity 1 59 0 1198 179 5 5 chr11 64828507 64828730 -85954823 - AluSx SINE Alu -87 225 3 1016 189 70 28 chr11 64828730 64828796 -85954757 + MER97b DNA MER1_type? 549 611 -442 1410 93 194 8 chr11 64828796 64829044 -85954509 + AluSg1 SINE Alu 1 294 -15 1016 189 70 28 chr11 64829044 64829262 -85954291 + MER97b DNA MER1_type? 611 845 -208 2179 113 3 0 chr11 64829309 64829620 -85953933 - AluSp SINE Alu 0 313 2 920 150 5 67 chr11 64829714 64829843 -85953710 + AluJo SINE Alu 1 116 -196 1500 91 0 5 chr11 64829843 64830051 -85953502 - AluSg/x SINE Alu -20 290 84 920 150 5 67 chr11 64830051 64830114 -85953439 + AluJo SINE Alu 116 181 -131 2107 131 0 0 chr11 64830250 64830562 -85952991 + AluSx SINE Alu 1 312 0 2195 103 3 0 chr11 64831780 64832081 -85951472 + AluSx SINE Alu 1 302 -10 2119 86 3 20 chr11 64832134 64832438 -85951115 - AluY SINE Alu -12 299 1 446 262 186 27 chr11 64832500 64832721 -85950832 - MIR SINE MIR -1 261 6 1272 130 0 16 chr11 64833066 64833258 -85950295 + AluSx SINE Alu 1 189 -123 803 181 30 109 chr11 64833401 64833894 -85949659 - LTR10C LTR ERV1 -135 456 3 1097 261 4 0 chr11 64833905 64834169 -85949384 + AluSx SINE Alu 32 296 -16 1168 236 61 0 chr11 64834172 64834469 -85949084 - L1ME1 LINE L1 -245 5921 5607 2241 112 0 0 chr11 64834493 64834805 -85948748 + AluSx SINE Alu 1 312 0 2259 90 6 0 chr11 64835187 64835498 -85948055 - AluSp SINE Alu 0 313 1 31 26 0 0 chr11 64835530 64835568 -85947985 + AT_rich Low_complexity Low_complexity 1 38 0 338 277 8 67 chr11 64836892 64837011 -85946542 + L1MC/D LINE L1 5710 5821 -1987 994 161 6 33 chr11 64837024 64837040 -85946513 + AluJo SINE Alu 120 135 -177 2214 112 0 6 chr11 64837040 64837353 -85946200 + AluSq SINE Alu 3 313 0 994 161 6 33 chr11 64837353 64837516 -85946037 + AluJo SINE Alu 135 294 -18 2144 93 0 29 chr11 64837518 64837830 -85945723 + AluSx SINE Alu 1 303 -9 2020 131 0 10 chr11 64839178 64839483 -85944070 + AluSq SINE Alu 1 302 -11 2433 70 3 6 chr11 64839956 64840270 -85943283 - AluSp SINE Alu 0 313 1 2032 88 0 11 chr11 64840639 64840955 -85942598 - AluSq SINE Alu 0 313 21 2105 85 20 10 chr11 64841121 64841415 -85942138 - AluSc SINE Alu -12 297 1 385 306 32 13 chr11 64841436 64841593 -85941960 - L1MC4a LINE L1 -1910 5898 5739 263 316 21 0 chr11 64841896 64841991 -85941562 + L2 LINE L2 2349 2445 -869 295 198 209 0 chr11 64842016 64842107 -85941446 + L2 LINE L2 2712 2821 -493 2255 112 0 0 chr11 64842166 64842470 -85941083 - AluSq SINE Alu -9 304 1 257 27 54 0 chr11 64842471 64842508 -85941045 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 272 265 133 0 chr11 64842542 64842625 -85940928 + L2 LINE L2 3179 3272 0 231 315 64 54 chr11 64842631 64843031 -85940522 - L2 LINE L2 -245 3027 2602 273 304 110 13 chr11 64843051 64843288 -85940265 - L2 LINE L2 -1120 2194 1935 202 221 52 39 chr11 64843515 64843592 -85939961 + MIR SINE MIR 20 97 -111 209 339 0 0 chr11 64844684 64844743 -85938810 + GA-rich Low_complexity Low_complexity 1 59 0 1658 95 3 39 chr11 64845207 64845492 -85938061 - AluSg SINE Alu -1 309 35 1002 114 0 7 chr11 64847436 64847585 -85935968 - MLT1B LTR MaLR -242 148 1 2273 87 16 7 chr11 64848827 64849136 -85934417 - AluSx SINE Alu 0 312 1 2341 77 0 3 chr11 64850095 64850394 -85933159 - AluSc SINE Alu -11 298 1 2177 111 7 0 chr11 64850451 64850757 -85932796 + AluSp SINE Alu 2 309 -4 200 108 0 27 chr11 64851686 64851723 -85931830 + (TCCCC)n Simple_repeat Simple_repeat 5 40 0 1430 149 20 143 chr11 64851949 64852291 -85931262 + AluYb8 SINE Alu 1 300 -8 406 269 42 8 chr11 64853311 64853430 -85930123 + MIR SINE MIR 140 262 0 295 329 11 2 chr11 64853723 64853865 -85929688 - MIR SINE MIR -65 143 12 235 333 183 8 chr11 64854200 64854326 -85929227 - MIR SINE MIR -65 197 50 221 305 99 40 chr11 64855820 64855971 -85927582 + L2 LINE L2 3012 3171 -101 1451 169 90 0 chr11 64856608 64856887 -85926666 + AluJo SINE Alu 1 304 -8 1995 143 0 13 chr11 64856887 64857202 -85926351 + AluJb SINE Alu 1 311 -1 631 246 111 13 chr11 64857533 64857741 -85925812 + MIR SINE MIR 8 228 -34 208 283 0 0 chr11 64857785 64857831 -85925722 - MIR SINE MIR -19 243 198 495 278 174 52 chr11 64857895 64858418 -85925135 - L2 LINE L2 -2 3311 2690 2335 60 0 0 chr11 64858418 64858733 -85924820 + AluY SINE Alu 1 315 0 495 278 174 52 chr11 64858733 64858775 -85924778 - L2 LINE L2 -623 2690 2654 274 363 44 6 chr11 64859180 64859340 -85924213 + MIR3 SINE MIR 16 181 -27 2131 113 0 19 chr11 64859484 64859802 -85923751 - AluSq SINE Alu -1 312 1 1906 138 3 0 chr11 64860125 64860422 -85923131 + AluJb SINE Alu 1 298 -14 470 220 17 0 chr11 64860422 64860531 -85923022 + MER97a DNA MER1_type? 244 357 -537 239 94 0 62 chr11 64860558 64860622 -85922931 - L1MA7 LINE L1 -1 6290 6231 1496 228 48 52 chr11 64860638 64860830 -85922723 + MER97b DNA MER1_type? 366 557 -496 2142 126 0 0 chr11 64860830 64861132 -85922421 - AluSx SINE Alu -8 304 3 1496 228 48 52 chr11 64861132 64861198 -85922355 + MER97b DNA MER1_type? 557 622 -431 1499 76 188 16 chr11 64861198 64861448 -85922105 + AluSg1 SINE Alu 1 293 -16 1496 228 48 52 chr11 64861448 64861671 -85921882 + MER97b DNA MER1_type? 622 846 -207 2209 113 3 0 chr11 64861715 64862026 -85921527 - AluSp SINE Alu 0 313 2 936 150 5 67 chr11 64862120 64862249 -85921304 + AluJo SINE Alu 1 116 -196 1639 72 0 0 chr11 64862249 64862457 -85921096 - AluSg/x SINE Alu -19 293 86 936 150 5 67 chr11 64862457 64862520 -85921033 + AluJo SINE Alu 116 181 -131 2147 131 0 0 chr11 64862657 64862969 -85920584 + AluSx SINE Alu 1 312 0 2259 90 6 0 chr11 64863349 64863660 -85919893 - AluSp SINE Alu 0 313 1 31 26 0 0 chr11 64863692 64863730 -85919823 + AT_rich Low_complexity Low_complexity 1 38 0 338 277 8 67 chr11 64865056 64865175 -85918378 + L1MC/D LINE L1 5710 5821 -1987 994 161 6 33 chr11 64865188 64865204 -85918349 + AluJo SINE Alu 120 135 -177 2214 112 0 6 chr11 64865204 64865517 -85918036 + AluSq SINE Alu 3 313 0 994 161 6 33 chr11 64865517 64865680 -85917873 + AluJo SINE Alu 135 294 -18 2144 93 0 29 chr11 64865682 64865994 -85917559 + AluSx SINE Alu 1 303 -9 2020 131 0 10 chr11 64867342 64867647 -85915906 + AluSq SINE Alu 1 302 -11 2402 76 3 6 chr11 64868123 64868437 -85915116 - AluSp SINE Alu 0 313 1 2032 88 0 11 chr11 64868806 64869122 -85914431 - AluSq SINE Alu 0 313 21 2105 85 20 10 chr11 64869288 64869582 -85913971 - AluSc SINE Alu -12 297 1 385 306 32 13 chr11 64869603 64869760 -85913793 - L1MC4a LINE L1 -1910 5898 5739 263 316 21 0 chr11 64870063 64870158 -85913395 + L2 LINE L2 2349 2445 -869 295 198 209 0 chr11 64870183 64870274 -85913279 + L2 LINE L2 2712 2821 -493 2237 111 0 3 chr11 64870333 64870640 -85912913 - AluSq SINE Alu -7 306 1 257 27 54 0 chr11 64870641 64870678 -85912875 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 272 265 133 0 chr11 64870712 64870795 -85912758 + L2 LINE L2 3179 3272 0 231 315 64 54 chr11 64870801 64871201 -85912352 - L2 LINE L2 -245 3027 2602 273 304 110 13 chr11 64871221 64871458 -85912095 - L2 LINE L2 -1120 2194 1935 202 221 52 39 chr11 64871685 64871762 -85911791 + MIR SINE MIR 20 97 -111 209 339 0 0 chr11 64872854 64872913 -85910640 + GA-rich Low_complexity Low_complexity 1 59 0 212 255 75 28 chr11 64873316 64873379 -85910174 - MIR SINE MIR -1 261 190 2404 75 7 0 chr11 64873379 64873686 -85909867 - AluSc SINE Alu 0 309 1 212 255 75 28 chr11 64873686 64873728 -85909825 - MIR SINE MIR -72 190 151 2172 116 0 3 chr11 64873729 64874039 -85909514 + AluSx SINE Alu 1 309 -3 37 0 0 0 chr11 64874039 64874076 -85909477 + AT_rich Low_complexity Low_complexity 1 37 0 384 266 81 24 chr11 64874076 64874200 -85909353 - MIR SINE MIR -95 167 37 2270 92 0 13 chr11 64874535 64874564 -85908989 - AluSg SINE Alu 0 310 282 387 0 0 0 chr11 64874564 64874607 -85908946 + (CTTG)n Simple_repeat Simple_repeat 2 44 0 2270 92 0 13 chr11 64874607 64874891 -85908662 - AluSg SINE Alu -28 282 1 2253 107 3 0 chr11 64875646 64875955 -85907598 - AluSx SINE Alu -2 310 1 233 309 222 24 chr11 64876425 64877020 -85906533 + L2 LINE L2 2231 2943 -371 2249 81 3 3 chr11 64877059 64877356 -85906197 + AluSq SINE Alu 1 297 -16 1899 136 7 10 chr11 64877530 64877832 -85905721 + AluJo SINE Alu 1 301 -11 2051 71 3 59 chr11 64878088 64878411 -85905142 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr11 64878411 64878433 -85905120 + AT_rich Low_complexity Low_complexity 1 22 0 2160 102 7 0 chr11 64878755 64879059 -85904494 - AluSx SINE Alu -6 306 1 2210 74 0 0 chr11 64879076 64879386 -85904167 - AluY SINE Alu 0 310 1 2266 89 7 0 chr11 64880247 64880549 -85903004 - AluSx SINE Alu -8 304 1 1025 84 0 0 chr11 64880554 64880685 -85902868 - AluSq/x SINE Alu -181 131 1 2254 91 3 0 chr11 64881343 64881639 -85901914 + AluSp SINE Alu 1 297 -16 3493 157 16 72 chr11 64881807 64882539 -85901014 - LTR8 LTR ERV1 0 691 1 1529 109 54 139 chr11 64882605 64882936 -85900617 + AluSx SINE Alu 1 303 -9 2150 131 0 10 chr11 64883153 64883465 -85900088 - AluJb SINE Alu -3 309 1 183 239 113 14 chr11 64883470 64883541 -85900012 + L2 LINE L2 2550 2627 -687 2190 185 35 30 chr11 64883544 64884042 -85899511 - MLT1D LTR MaLR -3 502 3 427 187 22 0 chr11 64884465 64884556 -85898997 - MER53 DNA DNA -91 98 6 1988 84 4 15 chr11 64884983 64885244 -85898309 - AluSc SINE Alu -11 298 41 2454 95 0 0 chr11 64885478 64885782 -85897771 + AluSp SINE Alu 1 304 -9 1929 113 16 68 chr11 64886051 64886360 -85897193 + AluSx SINE Alu 1 293 -19 203 313 0 45 chr11 64886390 64886457 -85897096 + G-rich Low_complexity Low_complexity 1 64 0 183 302 0 19 chr11 64886609 64886662 -85896891 + L2 LINE L2 3219 3270 -2 2189 116 3 19 chr11 64887733 64888043 -85895510 + AluSx SINE Alu 1 305 -7 2448 58 6 10 chr11 64888489 64888801 -85894752 - AluY SINE Alu 0 311 1 806 156 39 0 chr11 64888803 64888931 -85894622 - AluJo/FLAM SINE Alu -179 133 1 592 324 15 34 chr11 64888948 64889196 -85894357 - MIR SINE MIR -7 255 12 362 304 105 5 chr11 64889494 64889685 -85893868 + MIR SINE MIR 53 262 0 2557 53 0 10 chr11 64889743 64890043 -85893510 + AluY SINE Alu 1 297 -14 688 245 41 28 chr11 64890043 64890444 -85893109 - L1ME3 LINE L1 -13 6149 5657 2207 116 3 7 chr11 64890444 64890745 -85892808 - AluSx SINE Alu -12 300 1 688 245 41 28 chr11 64890745 64890974 -85892579 - L1ME3 LINE L1 -505 5657 5432 1005 168 68 0 chr11 64890992 64891153 -85892400 - FRAM SINE Alu -10 166 1 1120 208 30 52 chr11 64891161 64891260 -85892293 - L1ME3 LINE L1 -738 5426 5326 2265 111 13 0 chr11 64891260 64891566 -85891987 - AluSx SINE Alu -2 310 1 1120 208 30 52 chr11 64891566 64891858 -85891695 - L1ME3 LINE L1 -838 5326 5040 2450 69 0 10 chr11 64892176 64892479 -85891074 - AluY SINE Alu -9 302 3 2256 123 0 0 chr11 64892751 64893053 -85890500 - AluSx SINE Alu -10 302 1 343 214 29 0 chr11 64893102 64893172 -85890381 - MER20 DNA MER1_type 0 219 148 384 224 41 0 chr11 64893275 64893373 -85890180 - MIR3 SINE MIR -6 202 101 279 220 0 17 chr11 64893904 64893963 -85889590 - MIR SINE MIR -11 251 194 1692 156 3 36 chr11 64893969 64894089 -85889464 + AluJo SINE Alu 1 123 -189 2368 97 0 7 chr11 64894089 64894387 -85889166 - AluSx SINE Alu -16 296 1 1692 156 3 36 chr11 64894387 64894567 -85888986 + AluJo SINE Alu 123 291 -21 1840 173 7 0 chr11 64894588 64894883 -85888670 - AluSx SINE Alu -13 299 3 2287 93 3 0 chr11 64894891 64895181 -85888372 - AluSp SINE Alu -22 291 1 309 306 74 0 chr11 64896378 64896499 -85887054 - MIR SINE MIR -20 242 113 878 213 0 0 chr11 64897182 64897342 -85886211 + AluJb SINE Alu 137 296 -16 2063 129 30 7 chr11 64897346 64897649 -85885904 + AluSx SINE Alu 3 312 0 187 316 93 53 chr11 64898339 64898791 -85884762 + L2 LINE L2 1532 2001 -1313 1003 304 111 33 chr11 64899457 64900396 -85883157 - L2 LINE L2 -106 3207 2196 2293 105 3 0 chr11 64900397 64900701 -85882852 + AluY SINE Alu 1 305 -6 246 193 68 57 chr11 64901398 64901486 -85882067 + MIR SINE MIR 158 246 -16 221 274 0 0 chr11 64901520 64901571 -85881982 + L2 LINE L2 2700 2750 -564 761 154 0 0 chr11 64901572 64901689 -85881864 + AluJo/FLAM SINE Alu 1 117 -185 2135 121 0 55 chr11 64901689 64901946 -85881607 - AluSq SINE Alu 0 377 144 180 0 0 0 chr11 64901946 64901966 -85881587 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2135 121 0 55 chr11 64901966 64902103 -85881450 - AluSq SINE Alu -233 144 1 26 50 0 0 chr11 64902105 64902145 -85881408 + AT_rich Low_complexity Low_complexity 1 40 0 408 120 24 8 chr11 64902534 64902633 -85880920 + AluJ/FLAM SINE Alu 1 60 -242 631 156 0 9 chr11 64902692 64902801 -85880752 - AluSg/x SINE Alu -13 297 190 2320 110 3 0 chr11 64903066 64903367 -85880186 + AluSx SINE Alu 1 302 -10 1125 224 7 20 chr11 64903420 64903719 -85879834 - AluYa5 SINE Alu -2 299 5 180 0 0 0 chr11 64904508 64904528 -85879025 + (A)n Simple_repeat Simple_repeat 1 20 0 1120 208 30 52 chr11 64904846 64905138 -85878415 + L1ME3 LINE L1 5040 5326 -838 2322 110 10 0 chr11 64905138 64905447 -85878106 + AluSx SINE Alu 1 312 0 1120 208 30 52 chr11 64905447 64905546 -85878007 + L1ME3 LINE L1 5326 5426 -738 987 170 69 0 chr11 64905556 64905715 -85877838 + FRAM SINE Alu 1 166 -10 700 242 41 28 chr11 64905733 64905962 -85877591 + L1ME3 LINE L1 5432 5657 -505 2207 116 3 7 chr11 64905962 64906263 -85877290 + AluSx SINE Alu 1 300 -12 700 242 41 28 chr11 64906263 64906664 -85876889 + L1ME3 LINE L1 5657 6149 -13 2450 63 0 13 chr11 64906664 64906964 -85876589 - AluY SINE Alu -15 296 1 362 304 105 5 chr11 64907021 64907212 -85876341 - MIR SINE MIR 0 262 53 592 324 15 34 chr11 64907510 64907758 -85875795 + MIR SINE MIR 12 255 -7 806 156 39 0 chr11 64907775 64907903 -85875650 + AluJo/FLAM SINE Alu 1 133 -179 2426 61 6 10 chr11 64907905 64908217 -85875336 + AluY SINE Alu 1 311 0 2126 114 3 23 chr11 64908663 64908969 -85874584 - AluSx SINE Alu -12 300 1 183 302 0 19 chr11 64910040 64910093 -85873460 - L2 LINE L2 -2 3270 3219 2187 99 3 14 chr11 64910342 64910636 -85872917 - AluSg SINE Alu -19 291 1 330 231 175 50 chr11 64910833 64910908 -85872645 - Charlie8 DNA MER1_type -127 203 139 2273 124 3 6 chr11 64910908 64911222 -85872331 - AluSq SINE Alu 0 313 1 330 231 175 50 chr11 64911222 64911306 -85872247 - Charlie8 DNA MER1_type -191 139 24 1942 140 0 30 chr11 64912722 64913022 -85870531 + AluJb SINE Alu 1 291 -21 2338 109 0 6 chr11 64913137 64913449 -85870104 - AluSx SINE Alu -2 310 1 2187 96 26 29 chr11 64913456 64913768 -85869785 - AluSx SINE Alu -1 311 1 788 139 0 29 chr11 64913768 64913905 -85869648 - AluJo/FLAM SINE Alu -169 133 1 335 107 53 0 chr11 64914128 64914203 -85869350 + (TGAA)n Simple_repeat Simple_repeat 4 82 0 22 70 0 0 chr11 64914326 64914369 -85869184 + AT_rich Low_complexity Low_complexity 1 43 0 685 239 89 49 chr11 64914540 64914719 -85868834 - MIR SINE MIR 0 262 69 1689 169 0 72 chr11 64914719 64914864 -85868689 + AluJb SINE Alu 1 112 -200 2219 94 38 0 chr11 64914864 64915151 -85868402 + AluSq SINE Alu 2 299 -14 1689 169 0 72 chr11 64915151 64915325 -85868228 + AluJb SINE Alu 112 297 -15 685 239 89 49 chr11 64915325 64915392 -85868161 - MIR SINE MIR -193 69 6 2254 98 0 26 chr11 64915585 64915890 -85867663 + AluSc SINE Alu 1 297 -12 2217 142 0 0 chr11 64915902 64916211 -85867342 + AluSx SINE Alu 2 310 -2 2396 96 0 13 chr11 64916649 64916963 -85866590 + AluSg SINE Alu 1 310 0 467 114 25 0 chr11 64916963 64917042 -85866511 + GA-rich Low_complexity Low_complexity 4 84 0 2110 122 0 13 chr11 64917813 64918117 -85865436 + AluSx SINE Alu 1 300 -12 320 298 99 17 chr11 64918118 64918299 -85865254 + L1MC4a LINE L1 5727 5924 -240 1535 173 9 61 chr11 64918611 64918940 -85864613 + AluJo SINE Alu 1 312 0 596 146 146 0 chr11 64919050 64919160 -85864393 - L2 LINE L2 -1 3312 3187 2361 94 0 7 chr11 64919402 64919699 -85863854 + AluSx SINE Alu 2 296 -16 1413 151 111 47 chr11 64921071 64921350 -85862203 + AluJb SINE Alu 1 297 -15 2156 134 3 3 chr11 64921422 64921720 -85861833 + AluSc SINE Alu 2 299 -10 444 343 65 62 chr11 64922642 64922995 -85860558 - L2 LINE L2 -21 3251 2898 2312 92 23 0 chr11 64923441 64923745 -85859808 + AluSq SINE Alu 1 311 -2 2362 122 0 0 chr11 64924013 64924363 -85859190 + AluSx SINE Alu 1 350 0 661 98 114 32 chr11 64926040 64926163 -85857390 + FLAM_C SINE Alu 1 133 0 960 195 50 10 chr11 64926326 64926573 -85856980 - L1PA16 LINE L1 -8 6155 5873 1963 107 3 104 chr11 64926581 64926762 -85856791 - AluSx SINE Alu -5 307 174 2097 108 37 10 chr11 64926762 64927057 -85856496 - AluSc SINE Alu -5 304 2 1963 107 3 104 chr11 64927057 64927212 -85856341 - AluSx SINE Alu -138 174 5 528 221 123 13 chr11 64927698 64927852 -85855701 + MIR SINE MIR 48 218 -44 1008 163 25 15 chr11 64927946 64928148 -85855405 - MLT1B LTR MaLR 0 390 187 1225 153 12 121 chr11 64928177 64928516 -85855037 - AluSq SINE Alu 0 303 2 2384 82 3 0 chr11 64928519 64928811 -85854742 - AluSp SINE Alu -20 293 1 2251 118 3 13 chr11 64929002 64929317 -85854236 + AluSq SINE Alu 1 312 -1 228 197 61 15 chr11 64929475 64929541 -85854012 + CT-rich Low_complexity Low_complexity 6 74 0 2578 68 0 0 chr11 64929790 64930099 -85853454 - AluY SINE Alu -2 309 1 2273 80 45 0 chr11 64930101 64930390 -85853163 - AluSg SINE Alu -8 302 1 275 184 158 0 chr11 64930681 64930757 -85852796 + MIR SINE MIR 47 134 -128 2012 137 7 10 chr11 64931197 64931489 -85852064 - AluSx SINE Alu -21 291 1 396 271 186 27 chr11 64931834 64932055 -85851498 + MIR SINE MIR 6 261 -1 2086 113 3 28 chr11 64932117 64932500 -85851053 + AluY SINE Alu 1 375 0 739 162 0 0 chr11 64932500 64932617 -85850936 - AluJo/FLAM SINE Alu -185 117 1 202 260 20 0 chr11 64932618 64932668 -85850885 - L2 LINE L2 -564 2750 2700 246 193 68 57 chr11 64932702 64932790 -85850763 - MIR SINE MIR -16 246 158 2293 105 3 0 chr11 64933487 64933791 -85849762 - AluY SINE Alu -6 305 1 1053 303 106 38 chr11 64933792 64934731 -85848822 + L2 LINE L2 2196 3207 -106 258 325 86 47 chr11 64935397 64935849 -85847704 - L2 LINE L2 -1313 2001 1532 1934 129 30 7 chr11 64936539 64936842 -85846711 - AluSx SINE Alu 0 312 3 907 203 101 10 chr11 64936846 64937053 -85846500 - AluJb SINE Alu -16 296 71 322 306 74 0 chr11 64937689 64937810 -85845743 + MIR SINE MIR 113 242 -20 2376 69 3 0 chr11 64939007 64939310 -85844243 + AluSp SINE Alu 1 304 -9 2118 96 0 20 chr11 64939310 64939612 -85843941 + AluSg SINE Alu 1 296 -14 2098 95 10 7 chr11 64939700 64939995 -85843558 - AluSx SINE Alu -14 298 3 1860 166 0 7 chr11 64940026 64940322 -85843231 - AluJb SINE Alu -18 294 1 219 36 0 0 chr11 64940752 64940780 -85842773 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2098 138 0 0 chr11 64940784 64941096 -85842457 + AluSx SINE Alu 1 312 0 1579 156 3 36 chr11 64941104 64941284 -85842269 - AluJo SINE Alu -21 291 123 2224 97 0 7 chr11 64941284 64941582 -85841971 + AluSx SINE Alu 1 296 -16 1579 156 3 36 chr11 64941582 64941702 -85841851 - AluJo SINE Alu -189 123 1 273 220 0 17 chr11 64941708 64941767 -85841786 + MIR SINE MIR 194 251 -11 394 224 41 0 chr11 64942298 64942396 -85841157 + MIR3 SINE MIR 101 202 -6 355 214 29 0 chr11 64942499 64942569 -85840984 + MER20 DNA MER1_type 148 219 0 2098 132 0 0 chr11 64942618 64942928 -85840625 + AluSx SINE Alu 1 310 -2 2301 70 0 10 chr11 64943189 64943491 -85840062 + AluY SINE Alu 3 301 -10 2169 67 28 0 chr11 64943599 64943882 -85839671 - AluSx SINE Alu -21 291 1 1544 119 0 0 chr11 64944886 64945105 -85838448 - AluSg/x SINE Alu -10 300 82 2317 94 0 0 chr11 64945287 64945586 -85837967 + AluSc SINE Alu 1 299 -10 813 71 39 0 chr11 64945596 64945723 -85837830 + AluY SINE Alu 1 132 -179 183 114 0 0 chr11 64945845 64945880 -85837673 + (A)n Simple_repeat Simple_repeat 1 35 0 2277 166 35 83 chr11 64945922 64946565 -85836988 + LTR6A LTR ERV1 4 564 0 195 222 0 0 chr11 64946573 64946618 -85836935 + (TA)n Simple_repeat Simple_repeat 1 45 0 2349 83 3 0 chr11 64946660 64946962 -85836591 - AluSg SINE Alu -7 303 1 1121 137 13 56 chr11 64947088 64947308 -85836245 + AluJb SINE Alu 86 297 -15 2237 74 0 32 chr11 64947308 64947619 -85835934 - AluY SINE Alu -10 301 1 1121 137 13 56 chr11 64947619 64947632 -85835921 + AluJb SINE Alu 297 309 -3 511 250 0 0 chr11 64947638 64947746 -85835807 + FLAM_A SINE Alu 18 125 -17 310 288 91 23 chr11 64947746 64947878 -85835675 - L1ME LINE L1 -286 5835 5695 724 161 46 23 chr11 64948134 64948264 -85835289 - AluJb SINE Alu -22 290 158 2230 97 0 3 chr11 64948364 64948663 -85834890 + AluSx SINE Alu 1 298 -14 2174 102 10 3 chr11 64948664 64948967 -85834586 + AluSg SINE Alu 1 305 -5 351 216 72 10 chr11 64949257 64949354 -85834199 + MIR SINE MIR 78 180 -82 2171 81 3 29 chr11 64949408 64949717 -85833836 + AluSx SINE Alu 1 301 -11 484 161 74 0 chr11 64949717 64949798 -85833755 - L1MC1 LINE L1 -8 6325 6239 557 223 201 75 chr11 64949811 64950184 -85833369 - L1MC4 LINE L1 -93 7949 7530 278 182 0 0 chr11 64950209 64950264 -85833289 + MIR SINE MIR 168 222 -40 2032 92 14 0 chr11 64950825 64951106 -85832447 - AluSp SINE Alu -18 295 11 2242 88 3 0 chr11 64951293 64951590 -85831963 - AluSq SINE Alu -11 302 5 250 265 0 29 chr11 64951679 64951747 -85831806 + CT-rich Low_complexity Low_complexity 3 68 0 476 158 0 0 chr11 64951770 64951846 -85831707 - AluJ/FRAM SINE Alu -11 301 226 247 221 44 0 chr11 64951856 64951924 -85831629 + MER103 DNA DNA 88 158 -8 500 254 0 8 chr11 64952805 64952923 -85830630 - MIR SINE MIR -79 183 67 327 188 0 0 chr11 64956915 64956979 -85826574 - L1MD1 LINE L1 -15 6227 6164 1975 123 7 3 chr11 64958522 64958814 -85824739 + AluSx SINE Alu 5 297 -15 2110 114 0 0 chr11 64959012 64959310 -85824243 + AluSq SINE Alu 1 298 -15 185 255 21 0 chr11 64959627 64959674 -85823879 - MIR SINE MIR -182 80 33 201 39 0 0 chr11 64959875 64959901 -85823652 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1960 103 7 11 chr11 64959902 64960183 -85823370 - AluSx SINE Alu -32 280 1 213 39 0 0 chr11 64960271 64960297 -85823256 + (TG)n Simple_repeat Simple_repeat 2 27 0 2213 87 0 3 chr11 64960385 64960683 -85822870 - AluSx SINE Alu -15 297 1 766 165 16 0 chr11 64960841 64960962 -85822591 + AluJo/FLAM SINE Alu 2 124 -188 1308 99 0 0 chr11 64960962 64961134 -85822419 - AluSg/x SINE Alu -7 305 134 1904 61 8 0 chr11 64961134 64961380 -85822173 - AluY SINE Alu -17 294 47 1725 129 0 60 chr11 64961382 64961684 -85821869 + AluJo SINE Alu 28 311 -1 1788 147 32 0 chr11 64963977 64964262 -85819291 - AluJb SINE Alu -18 294 1 2142 107 0 19 chr11 64964272 64964589 -85818964 - AluY SINE Alu 0 311 1 2182 102 10 3 chr11 64964592 64964896 -85818657 - AluSg SINE Alu -4 306 1 2238 97 0 3 chr11 64964896 64965196 -85818357 - AluSx SINE Alu -13 299 1 724 161 46 23 chr11 64965296 64965426 -85818127 + AluJb SINE Alu 158 290 -22 310 288 91 23 chr11 64965682 64965814 -85817739 + L1ME LINE L1 5695 5835 -286 511 250 0 0 chr11 64965814 64965922 -85817631 - FLAM_A SINE Alu -17 125 18 2247 76 0 32 chr11 64965941 64966255 -85817298 + AluY SINE Alu 1 304 -7 195 222 0 0 chr11 64966297 64966342 -85817211 + (TA)n Simple_repeat Simple_repeat 1 45 0 2277 166 35 83 chr11 64966350 64966993 -85816560 - LTR6A LTR ERV1 0 564 4 1857 121 37 0 chr11 64967040 64967338 -85816215 - AluSc SINE Alu 0 309 1 1734 104 100 4 chr11 64967338 64967607 -85815946 - AluSx SINE Alu -17 295 1 1594 173 16 50 chr11 64969540 64969863 -85813690 - AluJb SINE Alu 0 312 1 205 293 40 20 chr11 64969976 64970075 -85813478 - MIR SINE MIR -114 148 48 27 0 0 0 chr11 64970085 64970112 -85813441 + AT_rich Low_complexity Low_complexity 1 27 0 820 177 0 77 chr11 64970142 64970230 -85813323 - FAM SINE Alu -140 171 103 2113 51 43 7 chr11 64970230 64970506 -85813047 - AluY SINE Alu -15 296 11 820 177 0 77 chr11 64970506 64970598 -85812955 - FAM SINE Alu -208 103 5 2090 91 17 20 chr11 64970613 64970911 -85812642 - AluSq SINE Alu -14 299 3 303 202 101 50 chr11 64971520 64971619 -85811934 + FAM SINE Alu 5 108 -67 2057 112 3 16 chr11 64973285 64973589 -85809964 - AluSx SINE Alu -12 300 1 364 259 36 27 chr11 64974698 64974810 -85808743 - MIR3 SINE MIR -7 201 89 2259 90 3 0 chr11 64976193 64976494 -85807059 - AluSq SINE Alu -11 302 1 231 213 0 0 chr11 64976817 64976864 -85806689 + (CA)n Simple_repeat Simple_repeat 2 48 0 2231 92 0 32 chr11 64977191 64977487 -85806066 + AluSg SINE Alu 1 288 -22 180 0 0 0 chr11 64977487 64977507 -85806046 + (CCA)n Simple_repeat Simple_repeat 3 22 0 2231 92 0 32 chr11 64977507 64977526 -85806027 + AluSg SINE Alu 288 306 -4 309 235 7 141 chr11 64977918 64977983 -85805570 - L2 LINE L2 0 3313 3278 1925 139 6 22 chr11 64977983 64978299 -85805254 + AluJb SINE Alu 1 311 -1 309 235 7 141 chr11 64978299 64978382 -85805171 - L2 LINE L2 -35 3278 3185 259 260 260 0 chr11 64978383 64978506 -85805047 + MIR SINE MIR 53 207 -55 1839 106 7 11 chr11 64978520 64978833 -85804720 + AluSx SINE Alu 12 323 0 2022 80 4 0 chr11 64979062 64979324 -85804229 - AluSx SINE Alu -17 295 33 1013 82 0 8 chr11 64979324 64979458 -85804095 - AluSc SINE Alu -176 133 1 2153 112 3 0 chr11 64980039 64980343 -85803210 - AluSx SINE Alu -7 305 1 223 214 36 12 chr11 64981800 64981884 -85801669 + (CCCCG)n Simple_repeat Simple_repeat 3 88 0 186 103 0 0 chr11 64986575 64986604 -85796949 + (TG)n Simple_repeat Simple_repeat 1 29 0 325 318 104 38 chr11 64986888 64987099 -85796454 + MIR SINE MIR 18 242 -20 21 0 0 0 chr11 64988049 64988070 -85795483 + AT_rich Low_complexity Low_complexity 1 21 0 834 160 0 0 chr11 64988072 64988203 -85795350 - FLAM_C SINE Alu -12 131 1 896 199 40 0 chr11 64988345 64988521 -85795032 + MER3 DNA MER1_type 1 183 -26 2201 82 3 3 chr11 64990750 64991044 -85792509 + AluSg SINE Alu 1 294 -16 218 300 134 17 chr11 64991044 64991192 -85792361 + MIR SINE MIR 36 165 -97 1721 136 61 0 chr11 64991192 64991471 -85792082 + AluJb SINE Alu 2 297 -15 2391 63 3 22 chr11 64991471 64991788 -85791765 + AluY SINE Alu 1 311 0 218 300 134 17 chr11 64991788 64991813 -85791740 + MIR SINE MIR 164 228 -34 521 221 29 11 chr11 64991865 64992000 -85791553 - MIR SINE MIR -61 147 16 340 266 30 102 chr11 64993000 64993068 -85790485 + MIR SINE MIR 43 114 -143 2162 108 3 0 chr11 64993068 64993364 -85790189 - AluSp SINE Alu -16 297 1 340 266 30 102 chr11 64993364 64993459 -85790094 + MIR SINE MIR 114 194 -63 2002 88 8 0 chr11 65013232 65013495 -85770058 - AluSq SINE Alu -48 265 1 262 260 110 0 chr11 65014016 65014089 -85769464 + MIR SINE MIR 91 171 -91 22 35 0 0 chr11 65014613 65014642 -85768911 + AT_rich Low_complexity Low_complexity 1 29 0 2189 103 7 0 chr11 65015175 65015477 -85768076 - AluSq SINE Alu -9 304 1 518 132 0 11 chr11 65015771 65015862 -85767691 + (TCCC)n Simple_repeat Simple_repeat 1 90 0 516 237 0 0 chr11 65015862 65015959 -85767594 - AluSg/x SINE Alu -16 293 197 1097 99 0 7 chr11 65015959 65016110 -85767443 - AluJb SINE Alu -162 150 1 563 286 92 29 chr11 65016146 65016584 -85766969 - LTR33 LTR ERVL -2 519 1 2062 119 7 0 chr11 65016585 65016879 -85766674 + AluSx SINE Alu 1 296 -16 553 172 71 0 chr11 65016889 65016988 -85766565 + FLAM_A SINE Alu 11 116 -26 289 231 120 46 chr11 65017049 65017157 -85766396 - MARNA DNA Mariner -14 572 457 2161 115 3 10 chr11 65017176 65017490 -85766063 + AluSx SINE Alu 1 312 0 225 247 186 0 chr11 65017497 65017594 -85765959 - MARNA DNA Mariner -286 300 186 441 217 43 36 chr11 65017819 65017957 -85765596 - L1MC4 LINE L1 -2 8040 7902 1885 138 0 0 chr11 65017969 65018244 -85765309 - AluSx SINE Alu -11 301 27 1266 177 84 34 chr11 65018263 65018328 -85765225 - L1MC4 LINE L1 -199 7642 7582 2081 96 65 3 chr11 65018328 65018619 -85764934 - AluSq SINE Alu -4 309 1 1266 177 84 34 chr11 65018619 65018933 -85764620 - L1MC4 LINE L1 -259 7582 7217 232 373 18 27 chr11 65019516 65019626 -85763927 - MIR SINE MIR -62 146 38 862 174 0 0 chr11 65019817 65019961 -85763592 + FRAM SINE Alu 21 164 -12 459 230 117 92 chr11 65020038 65020100 -85763453 + MIR SINE MIR 62 121 -141 2012 85 50 0 chr11 65020100 65020383 -85763170 - AluSx SINE Alu -2 310 14 459 230 117 92 chr11 65020383 65020516 -85763037 + MIR SINE MIR 121 262 0 869 252 17 17 chr11 65020523 65020753 -85762800 - MIR SINE MIR -25 237 8 1437 110 44 116 chr11 65021646 65021998 -85761555 - AluJo SINE Alu 0 312 1 2230 122 0 0 chr11 65023675 65024025 -85759528 - AluSx SINE Alu 0 350 1 2189 89 23 0 chr11 65024293 65024597 -85758956 - AluSq SINE Alu -2 311 1 475 340 65 62 chr11 65025043 65025396 -85758157 + L2 LINE L2 2898 3251 -21 2040 131 3 3 chr11 65026318 65026616 -85756937 - AluSc SINE Alu -10 299 2 1302 151 111 47 chr11 65026688 65026967 -85756586 - AluJb SINE Alu -15 297 1 2221 94 0 7 chr11 65028339 65028636 -85754917 - AluSx SINE Alu -16 296 2 590 146 146 0 chr11 65028878 65028988 -85754565 + L2 LINE L2 3187 3312 -1 1422 173 9 61 chr11 65029098 65029427 -85754126 - AluJo SINE Alu 0 312 1 329 298 106 16 chr11 65029739 65029921 -85753632 - L1MC4a LINE L1 -240 5924 5709 2008 118 0 13 chr11 65029921 65030225 -85753328 - AluSx SINE Alu -12 300 1 329 298 106 16 chr11 65030225 65030249 -85753304 - L1MC4a LINE L1 -455 5709 5689 467 114 25 0 chr11 65030996 65031075 -85752478 + CT-rich Low_complexity Low_complexity 4 84 0 2266 96 0 13 chr11 65031075 65031389 -85752164 - AluSg SINE Alu 0 310 1 2090 142 0 0 chr11 65031827 65032136 -85751417 - AluSx SINE Alu -2 310 2 2120 98 0 26 chr11 65032148 65032453 -85751100 - AluSc SINE Alu -12 297 1 681 239 89 49 chr11 65032646 65032713 -85750840 + MIR SINE MIR 6 69 -193 1572 169 0 72 chr11 65032713 65032887 -85750666 - AluJb SINE Alu -15 297 155 2083 94 38 0 chr11 65032887 65033174 -85750379 - AluSq SINE Alu -14 299 2 1572 169 0 72 chr11 65033174 65033319 -85750234 - AluJb SINE Alu -157 155 1 681 239 89 49 chr11 65033319 65033498 -85750055 + MIR SINE MIR 69 262 0 22 70 0 0 chr11 65033669 65033712 -85749841 + AT_rich Low_complexity Low_complexity 1 43 0 335 107 53 0 chr11 65033835 65033910 -85749643 + (TTCA)n Simple_repeat Simple_repeat 4 82 0 846 139 0 29 chr11 65034133 65034270 -85749283 + AluJo/FLAM SINE Alu 1 133 -169 2058 96 26 29 chr11 65034270 65034583 -85748970 + AluSx SINE Alu 1 312 0 2183 115 0 6 chr11 65034590 65034904 -85748649 + AluSx SINE Alu 1 312 0 1821 140 0 30 chr11 65035017 65035317 -85748236 - AluJb SINE Alu -21 291 1 330 231 175 50 chr11 65036733 65036817 -85746736 + Charlie8 DNA MER1_type 24 96 -234 2273 124 3 6 chr11 65036817 65037131 -85746422 + AluSq SINE Alu 1 313 0 330 231 175 50 chr11 65037131 65037206 -85746347 + Charlie8 DNA MER1_type 96 203 -127 2438 78 3 7 chr11 65037403 65037712 -85745841 + AluSg SINE Alu 1 308 -2 397 314 101 49 chr11 65038325 65038647 -85744906 + L2 LINE L2 2593 2938 -376 2288 111 0 7 chr11 65038647 65038945 -85744608 - AluSg SINE Alu -14 296 1 397 314 101 49 chr11 65038945 65038988 -85744565 + L2 LINE L2 2938 2977 -337 2122 110 10 42 chr11 65039192 65039501 -85744052 + AluSq SINE Alu 1 299 -14 185 184 0 82 chr11 65039731 65039780 -85743773 - L2 LINE L2 -5 3267 3223 659 75 123 0 chr11 65040282 65040388 -85743165 + AluSg/x SINE Alu 176 294 -18 651 289 138 0 chr11 65040512 65040737 -85742816 + MIR SINE MIR 6 261 -1 993 162 84 0 chr11 65041147 65041338 -85742215 - L1MB3 LINE L1 -11 6172 5966 738 185 84 9 chr11 65041339 65041393 -85742160 - L1MB3 LINE L1 -216 5967 5918 2350 86 6 26 chr11 65041393 65041706 -85741847 - AluSp SINE Alu -6 307 1 738 185 84 9 chr11 65041706 65041848 -85741705 - L1MB3 LINE L1 -265 5918 5815 2112 131 0 16 chr11 65041859 65042165 -85741388 - AluSx SINE Alu -11 301 1 2468 88 0 0 chr11 65042170 65042477 -85741076 - AluY SINE Alu -3 308 2 1643 180 41 10 chr11 65042488 65042782 -85740771 - AluJo SINE Alu -9 303 1 685 282 89 33 chr11 65042785 65042810 -85740743 + L2 LINE L2 2692 2714 -599 2428 60 3 0 chr11 65042810 65043133 -85740420 + AluSp SINE Alu 1 324 0 685 282 89 33 chr11 65043133 65043468 -85740085 + L2 LINE L2 2714 3087 -226 189 0 0 0 chr11 65043490 65043511 -85740042 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1741 158 14 45 chr11 65043513 65043804 -85739749 - AluJo SINE Alu -30 282 1 2580 39 13 16 chr11 65043838 65044012 -85739541 - AluY SINE Alu -5 306 132 2560 68 0 3 chr11 65044012 65044323 -85739230 - AluY SINE Alu -1 310 1 2580 39 13 16 chr11 65044323 65044455 -85739098 - AluY SINE Alu -179 132 1 782 232 40 18 chr11 65045250 65045474 -85738079 - MIR SINE MIR -22 240 12 2218 113 7 0 chr11 65045476 65045768 -85737785 - AluSx SINE Alu -18 294 1 200 200 0 0 chr11 65045783 65045828 -85737725 - L2 LINE L2 -224 3048 3004 2007 72 41 72 chr11 65046036 65046361 -85737192 + AluY SINE Alu 1 316 0 2321 117 0 9 chr11 65046515 65046831 -85736722 + AluSq SINE Alu 1 313 0 216 0 0 0 chr11 65047080 65047104 -85736449 + (T)n Simple_repeat Simple_repeat 1 24 0 2421 100 0 3 chr11 65047217 65047527 -85736026 - AluSg SINE Alu 0 310 2 2405 109 3 0 chr11 65048439 65048751 -85734802 + AluSp SINE Alu 1 313 0 1249 152 0 0 chr11 65048861 65049039 -85734514 + AluSg/x SINE Alu 129 306 -4 1829 148 0 58 chr11 65049124 65049454 -85734099 - AluJo SINE Alu 0 312 2 321 281 163 0 chr11 65049897 65050050 -85733503 + L2 LINE L2 2870 3047 -225 2316 59 17 3 chr11 65050089 65050376 -85733177 - AluSq SINE Alu -16 297 7 1067 101 6 18 chr11 65050384 65050553 -85733000 - L1PA14 LINE L1 -8 6153 5987 8600 86 21 28 chr11 65050553 65051504 -85732049 - HSMAR1 DNA Mariner -5 1282 326 1852 104 0 20 chr11 65051504 65051755 -85731798 - AluSx SINE Alu -22 290 45 8600 86 21 28 chr11 65051755 65052000 -85731553 - HSMAR1 DNA Mariner -961 326 93 2378 108 0 0 chr11 65052000 65052306 -85731247 + AluSx SINE Alu 1 306 -6 8600 86 21 28 chr11 65052306 65052399 -85731154 - HSMAR1 DNA Mariner -1194 93 1 1284 103 0 0 chr11 65052399 65052583 -85730970 - L1PA14 LINE L1 -173 5988 5805 2251 110 0 3 chr11 65052597 65052888 -85730665 - AluSx SINE Alu -22 290 1 378 294 59 0 chr11 65053221 65053357 -85730196 - MIR SINE MIR -52 210 67 222 226 32 16 chr11 65053366 65053428 -85730125 - MER5A DNA MER1_type -5 184 122 2386 87 10 3 chr11 65053428 65053726 -85729827 + AluSg SINE Alu 1 300 -10 2411 71 24 0 chr11 65054730 65055025 -85728528 + AluSx SINE Alu 1 302 -10 518 303 27 61 chr11 65055193 65055487 -85728066 + L2 LINE L2 1191 1474 -1840 334 203 0 0 chr11 65055521 65055580 -85727973 + MER81 DNA DNA 2 60 -54 182 114 0 23 chr11 65055594 65055638 -85727915 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2344 93 0 19 chr11 65055642 65055952 -85727601 - AluSg SINE Alu -3 307 4 464 214 0 0 chr11 65055987 65056085 -85727468 - AluJb SINE Alu -84 228 131 698 176 0 0 chr11 65056125 65056244 -85727309 - FLAM_C SINE Alu -23 120 2 2391 95 3 0 chr11 65056274 65056570 -85726983 + AluSx SINE Alu 1 297 -15 1067 170 0 0 chr11 65056570 65056735 -85726818 + AluJb SINE Alu 134 298 -14 295 342 26 8 chr11 65056760 65056877 -85726676 - MER5C DNA MER1_type -201 123 5 * 590 239 101 36 chr11 65056848 65057095 -85726458 + L2 LINE L2 1971 2233 -1081 1504 202 59 86 chr11 65057101 65057222 -85726331 + MLT1C LTR MaLR 6 129 -338 2408 99 0 0 chr11 65057222 65057548 -85726005 + AluSg SINE Alu 2 310 0 1504 202 59 86 chr11 65057548 65057901 -85725652 + MLT1C LTR MaLR 129 467 0 2306 110 0 0 chr11 65057926 65058218 -85725335 + AluSx SINE Alu 1 292 -20 868 287 16 53 chr11 65058229 65058532 -85725021 + L2 LINE L2 2240 2531 -783 221 291 233 0 chr11 65058565 65058668 -85724885 + L2 LINE L2 3186 3312 -1 1024 170 0 57 chr11 65058930 65059124 -85724429 + AluJb SINE Alu 125 307 -5 2382 97 0 0 chr11 65059288 65059587 -85723966 + AluSx SINE Alu 1 299 -13 216 382 22 22 chr11 65059788 65059924 -85723629 - L2 LINE L2 -1 3312 3177 2148 125 7 7 chr11 65059951 65060254 -85723299 + AluSx SINE Alu 1 303 -9 1407 120 62 0 chr11 65060347 65060572 -85722981 + LTR54 LTR ERV1 1 239 -271 654 138 0 35 chr11 65060574 65060690 -85722863 + 7SLRNA srpRNA srpRNA 205 316 -4 1058 164 0 0 chr11 65060697 65060874 -85722679 + LTR54 LTR ERV1 293 469 -41 350 167 241 9 chr11 65060880 65060988 -85722565 - FLAM_C SINE Alu 0 133 1 2079 153 0 0 chr11 65061005 65061305 -85722248 - AluSx SINE Alu -12 300 1 1927 148 0 11 chr11 65061343 65061644 -85721909 - AluSx SINE Alu 0 305 8 2281 73 9 44 chr11 65061907 65062049 -85721504 + AluSc SINE Alu 1 146 -163 2449 96 0 0 chr11 65062049 65062342 -85721211 + AluSg SINE Alu 1 293 -17 2281 73 9 44 chr11 65062342 65062515 -85721038 + AluSc SINE Alu 146 305 -4 436 236 0 0 chr11 65063059 65063148 -85720405 - MER20 DNA MER1_type 0 219 131 268 157 62 0 chr11 65063156 65063213 -85720340 + MER20 DNA MER1_type 56 118 -101 1242 82 0 0 chr11 65063214 65063360 -85720193 - AluSq/x SINE Alu -167 146 1 1177 92 63 0 chr11 65063360 65063534 -85720019 - MER46B DNA MER2_type -176 60 1 347 167 14 14 chr11 65063486 65063558 -85719995 + MER46A DNA MER2_type 97 168 -68 * 216 287 28 37 chr11 65063714 65063822 -85719731 + GA-rich Low_complexity Low_complexity 1 107 0 922 103 8 0 chr11 65064342 65064459 -85719094 - AluSp SINE Alu -195 118 1 277 276 46 0 chr11 65064467 65064554 -85718999 + MIR SINE MIR 104 194 -68 2350 85 7 16 chr11 65078750 65079056 -85704497 - AluSq SINE Alu -10 303 1 494 279 54 7 chr11 65079583 65079730 -85703823 + MER5A DNA MER1_type 7 160 -29 337 227 73 36 chr11 65079814 65079924 -85703629 + MER81 DNA DNA 1 114 0 337 319 74 6 chr11 65080257 65080420 -85703133 - MIR3 SINE MIR -1 207 34 342 228 31 23 chr11 65080501 65080630 -85702923 - MIR3 SINE MIR -7 201 72 2116 96 78 0 chr11 65080696 65080977 -85702576 + AluSq SINE Alu 1 303 -10 1226 123 0 0 chr11 65080978 65081148 -85702405 + AluSg/x SINE Alu 134 303 -7 2018 74 60 32 chr11 65081659 65081943 -85701610 - AluY SINE Alu -19 292 1 682 184 71 131 chr11 65081945 65082061 -85701492 + L1MC4 LINE L1 7790 7911 -131 2213 136 0 0 chr11 65082061 65082362 -85701191 + AluSx SINE Alu 1 301 -11 682 184 71 131 chr11 65082362 65082512 -85701041 + L1MC4 LINE L1 7911 8040 -2 2149 123 3 16 chr11 65082841 65083157 -85700396 - AluSx SINE Alu 0 312 1 287 231 102 46 chr11 65083176 65083284 -85700269 - MARNA DNA Mariner -458 128 15 517 172 71 0 chr11 65083345 65083444 -85700109 - FLAM_A SINE Alu -26 116 11 2193 119 7 0 chr11 65083454 65083748 -85699805 - AluSx SINE Alu -16 296 1 521 286 92 29 chr11 65083749 65084187 -85699366 + LTR33 LTR ERVL 1 519 -2 1062 101 20 7 chr11 65084223 65084371 -85699182 + AluJb SINE Alu 1 150 -162 412 119 0 0 chr11 65084472 65084531 -85699022 - AluS SINE Alu -249 60 2 467 114 25 0 chr11 65085303 65085382 -85698171 + CT-rich Low_complexity Low_complexity 4 84 0 2396 96 0 13 chr11 65085382 65085696 -85697857 - AluSg SINE Alu 0 310 1 2148 146 3 0 chr11 65086134 65086442 -85697111 - AluSx SINE Alu -2 310 2 2219 98 0 29 chr11 65086454 65086760 -85696793 - AluSc SINE Alu -12 297 1 739 239 89 49 chr11 65086953 65087020 -85696533 + MIR SINE MIR 6 69 -193 1681 169 0 72 chr11 65087020 65087194 -85696359 - AluJb SINE Alu -15 297 155 2215 94 38 0 chr11 65087194 65087481 -85696072 - AluSq SINE Alu -14 299 2 1681 169 0 72 chr11 65087481 65087626 -85695927 - AluJb SINE Alu -157 155 1 739 239 89 49 chr11 65087626 65087805 -85695748 + MIR SINE MIR 69 262 0 22 70 0 0 chr11 65087976 65088019 -85695534 + AT_rich Low_complexity Low_complexity 1 43 0 335 107 53 0 chr11 65088142 65088217 -85695336 + (TTCA)n Simple_repeat Simple_repeat 4 82 0 843 139 0 29 chr11 65088440 65088577 -85694976 + AluJo/FLAM SINE Alu 1 133 -169 2229 89 26 29 chr11 65088577 65088890 -85694663 + AluSx SINE Alu 1 312 0 2371 105 0 6 chr11 65088898 65089212 -85694341 + AluSx SINE Alu 1 312 0 28 0 0 0 chr11 65089218 65089246 -85694307 + AT_rich Low_complexity Low_complexity 1 28 0 1930 140 0 30 chr11 65089325 65089625 -85693928 - AluJb SINE Alu -21 291 1 312 231 175 50 chr11 65091041 65091125 -85692428 + Charlie8 DNA MER1_type 24 96 -2321 2263 124 3 6 chr11 65091125 65091439 -85692114 + AluSq SINE Alu 1 313 0 312 231 175 50 chr11 65091439 65091514 -85692039 + Charlie8 DNA MER1_type 96 203 -2214 2243 87 3 10 chr11 65091711 65092011 -85691542 + AluSg SINE Alu 1 298 -12 307 298 99 17 chr11 65092012 65092193 -85691360 + L1MC4a LINE L1 5727 5924 -240 1539 173 9 61 chr11 65092505 65092834 -85690719 + AluJo SINE Alu 1 312 0 634 146 146 0 chr11 65092944 65093054 -85690499 - L2 LINE L2 -1 3312 3187 2350 94 0 7 chr11 65093296 65093593 -85689960 + AluSx SINE Alu 2 296 -16 1406 151 111 47 chr11 65094965 65095244 -85688309 + AluJb SINE Alu 1 297 -15 2150 134 3 3 chr11 65095316 65095614 -85687939 + AluSc SINE Alu 2 299 -10 526 340 65 62 chr11 65096536 65096889 -85686664 - L2 LINE L2 -21 3251 2898 2316 89 23 0 chr11 65097335 65097639 -85685914 + AluSq SINE Alu 1 311 -2 2302 131 0 0 chr11 65097907 65098244 -85685309 + AluSx SINE Alu 1 337 0 1978 120 4 0 chr11 65098351 65098610 -85684943 - AluSp SINE Alu -53 260 1 2268 94 0 3 chr11 65099524 65099810 -85683743 + AluSg SINE Alu 2 286 -24 1098 97 0 7 chr11 65100156 65100300 -85683253 - AluSq SINE Alu -144 169 27 1293 175 71 34 chr11 65100319 65100388 -85683165 - L1MC4 LINE L1 -199 7642 7577 2212 91 66 3 chr11 65100388 65100675 -85682878 - AluSq SINE Alu -8 305 1 1293 175 71 34 chr11 65100675 65100989 -85682564 - L1MC4 LINE L1 -264 7577 7217 244 373 18 27 chr11 65101572 65101682 -85681871 - MIR SINE MIR -62 146 38 932 213 0 0 chr11 65101853 65102017 -85681536 + FRAM SINE Alu 1 164 -2 181 271 21 0 chr11 65102033 65102081 -85681472 - L2 LINE L2 -89 3224 3176 503 230 117 92 chr11 65102094 65102156 -85681397 + MIR SINE MIR 62 121 -141 2131 85 50 0 chr11 65102156 65102439 -85681114 - AluSx SINE Alu -2 310 14 503 230 117 92 chr11 65102439 65102572 -85680981 + MIR SINE MIR 121 262 0 917 256 17 17 chr11 65102579 65102809 -85680744 - MIR SINE MIR -25 237 8 958 114 0 27 chr11 65103705 65103888 -85679665 - AluJb SINE Alu 0 312 149 1094 266 44 37 chr11 65153888 65154211 -85629342 + HAL1 LINE L1 1584 1903 -604 1470 174 16 59 chr11 65154211 65154385 -85629168 - AluJb SINE Alu -12 300 120 342 0 0 0 chr11 65154385 65154423 -85629130 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2102 104 4 4 chr11 65154423 65154701 -85628852 - AluSc SINE Alu -30 279 2 1470 174 16 59 chr11 65154701 65154830 -85628723 - AluJb SINE Alu -190 122 9 1094 266 44 37 chr11 65154830 65154988 -85628565 + HAL1 LINE L1 1903 2068 -439 380 294 180 12 chr11 65154991 65155236 -85628317 + HAL1 LINE L1 2222 2507 0 282 232 30 10 chr11 65155254 65155353 -85628200 + L1ME4a LINE L1 5835 5935 -186 1910 154 0 3 chr11 65155419 65155704 -85627849 - AluJo SINE Alu -23 289 6 22 99 0 0 chr11 65155720 65155791 -85627762 + AT_rich Low_complexity Low_complexity 1 71 0 397 231 0 0 chr11 65155818 65155896 -85627657 - FLAM SINE Alu -12 121 44 234 298 67 45 chr11 65157018 65157087 -85626466 - L1ME3A LINE L1 -208 5962 5896 2124 140 0 3 chr11 65157087 65157395 -85626158 - AluSx SINE Alu -5 307 1 234 298 67 45 chr11 65157395 65157503 -85626050 - L1ME3A LINE L1 -274 5896 5781 210 208 0 0 chr11 65157506 65157554 -85625999 + (TA)n Simple_repeat Simple_repeat 1 48 0 1667 105 112 4 chr11 65157554 65157821 -85625732 - AluSq SINE Alu -15 298 3 21 36 0 0 chr11 65157823 65157851 -85625702 + AT_rich Low_complexity Low_complexity 1 28 0 752 140 18 0 chr11 65157857 65157971 -85625582 - FLAM_C SINE Alu -25 118 3 23 33 0 0 chr11 65158013 65158043 -85625510 + AT_rich Low_complexity Low_complexity 1 30 0 397 244 18 83 chr11 65158142 65158310 -85625243 + MER5B DNA MER1_type 18 174 -4 2163 107 4 0 chr11 65158412 65158721 -85624832 + AluSq SINE Alu 1 310 0 747 134 6 116 chr11 65158907 65159079 -85624474 + MER21A LTR ERV1 13 165 -766 289 196 0 0 chr11 65159106 65159152 -85624401 + MER39 LTR ERV1 267 312 -395 2382 54 0 4 chr11 65159418 65159694 -85623859 - AluY SINE Alu -28 283 9 451 253 58 32 chr11 65159729 65159883 -85623670 - MLT1D LTR MaLR -347 158 1 180 189 19 75 chr11 65160825 65160878 -85622675 + MIR SINE MIR 164 213 -49 273 250 13 26 chr11 65161058 65161134 -85622419 + MER5B DNA MER1_type 1 75 -103 523 203 91 7 chr11 65161472 65161615 -85621938 + L1MB4 LINE L1 5981 6135 -45 2042 122 16 26 chr11 65161622 65161934 -85621619 + AluSc SINE Alu 1 309 0 316 41 0 0 chr11 65162367 65162416 -85621137 - AluSp SINE Alu 0 303 255 1695 81 5 5 chr11 65162416 65162625 -85620928 - AluSp SINE Alu -104 209 1 648 218 109 66 chr11 65163142 65163445 -85620108 + HAL1 LINE L1 1456 1771 -736 207 256 56 32 chr11 65163977 65164102 -85619451 - L2 LINE L2 -213 3059 2932 851 199 41 25 chr11 65164191 65164387 -85619166 - MER20 DNA MER1_type 0 219 21 3045 127 2 7 chr11 65165304 65165737 -85617816 + LTR3 LTR ERVK 1 431 -1 13550 105 31 2 chr11 65165742 65167659 -85615894 + HERVK3 LTR ERVK 39 2011 -5232 1629 116 4 0 chr11 65167659 65167884 -85615669 - LTR3 LTR ERVK -206 226 1 2154 86 0 14 chr11 65168034 65168312 -85615241 + AluY SINE Alu 34 307 -4 2115 98 14 17 chr11 65168412 65168707 -85614846 - AluSq SINE Alu -19 294 1 245 108 0 0 chr11 65168725 65168762 -85614791 - MLT1C LTR MaLR -233 234 198 2274 106 7 0 chr11 65169408 65169710 -85613843 - AluSx SINE Alu -8 304 1 2321 102 0 0 chr11 65170312 65170607 -85612946 + AluSq SINE Alu 1 295 -18 2049 119 0 53 chr11 65170937 65171257 -85612296 + AluSx SINE Alu 6 308 -4 365 173 0 40 chr11 65171697 65171772 -85611781 - FLAM_A SINE Alu -16 117 46 2499 165 16 44 chr11 65171772 65172307 -85611246 - MER41B LTR ERV1 -12 597 111 2114 121 40 44 chr11 65172371 65172467 -85611086 - THE1C LTR MaLR 0 428 333 1860 122 0 8 chr11 65172467 65172729 -85610824 - AluSx SINE Alu -11 301 42 2114 121 40 44 chr11 65172729 65173060 -85610493 - THE1C LTR MaLR -95 333 1 2081 242 51 54 chr11 65173060 65173654 -85609899 + MER21B LTR ERV1 157 750 -113 4414 164 54 34 chr11 65173654 65174539 -85609014 - MER4D LTR ERV1 0 903 1 2081 242 51 54 chr11 65174539 65174596 -85608957 + MER21B LTR ERV1 750 806 -57 1910 116 17 30 chr11 65174707 65175008 -85608545 + AluSq SINE Alu 1 297 -16 1543 186 25 11 chr11 65175013 65175298 -85608255 + AluJo SINE Alu 1 289 -23 180 200 0 0 chr11 65175892 65175932 -85607621 + GA-rich Low_complexity Low_complexity 2 41 0 2149 134 3 0 chr11 65176057 65176356 -85607197 + AluSx SINE Alu 1 300 -12 1090 171 28 108 chr11 65176619 65176759 -85606794 - LTR56 LTR ERV1 0 437 287 2086 106 7 7 chr11 65176759 65177085 -85606468 - AluSg SINE Alu 0 326 1 1090 171 28 108 chr11 65177085 65177338 -85606215 - LTR56 LTR ERV1 -150 287 99 1637 127 0 40 chr11 65177342 65177595 -85605958 + AluSg SINE Alu 30 272 -38 2043 125 3 7 chr11 65177599 65177894 -85605659 - AluJo SINE Alu -18 294 1 2009 131 10 13 chr11 65178162 65178475 -85605078 - AluSx SINE Alu 0 312 1 1849 158 0 16 chr11 65178734 65179045 -85604508 + AluJb SINE Alu 1 306 -6 216 0 0 0 chr11 65179178 65179202 -85604351 + (TG)n Simple_repeat Simple_repeat 1 24 0 360 111 0 0 chr11 65179202 65179256 -85604297 + (TA)n Simple_repeat Simple_repeat 1 54 0 250 224 35 0 chr11 65179315 65179373 -85604180 + LTR49-int LTR ERV1 4434 4493 -1838 387 89 0 0 chr11 65179568 65179624 -85603929 + (TA)n Simple_repeat Simple_repeat 1 56 0 216 0 0 0 chr11 65179624 65179648 -85603905 + (CA)n Simple_repeat Simple_repeat 1 24 0 386 187 0 0 chr11 65179802 65179877 -85603676 - AluJb SINE Alu -15 287 213 2194 184 14 2 chr11 65179980 65180399 -85603154 - L1MC1 LINE L1 -430 5903 5480 187 361 28 0 chr11 65180653 65180761 -85602792 + MIR SINE MIR 73 183 -79 2286 232 46 48 chr11 65181153 65181877 -85601676 - L1MB2 LINE L1 0 6171 5450 1025 121 3 0 chr11 65182167 65182457 -85601096 + (TG)n Simple_repeat Simple_repeat 1 291 0 256 319 97 9 chr11 65182982 65183095 -85600458 - L2 LINE L2 0 3272 3150 341 271 24 65 chr11 65183716 65183886 -85599667 - MIR SINE MIR -13 249 87 321 293 32 25 chr11 65184116 65184273 -85599280 + MER5B DNA MER1_type 3 160 -18 6131 48 0 0 chr11 65184332 65185103 -85598450 - L1PA4 LINE L1 -2360 3786 3016 967 50 8 0 chr11 65185103 65185224 -85598329 + L1PA4 LINE L1 3778 3899 -2247 5225 35 0 0 chr11 65185224 65185831 -85597722 + L1PA4 LINE L1 5548 6155 0 226 253 13 0 chr11 65187262 65187337 -85596216 + MIR SINE MIR 46 121 -141 1476 213 0 14 chr11 65187426 65187703 -85595850 + AluJb SINE Alu 1 273 -39 516 263 67 38 chr11 65190188 65190428 -85593125 - MLT1D LTR MaLR -4 501 224 189 0 0 0 chr11 65190475 65190496 -85593057 + (T)n Simple_repeat Simple_repeat 1 21 0 227 275 202 21 chr11 65190728 65190961 -85592592 + HAL1 LINE L1 1383 1657 -850 2623 53 0 0 chr11 65190968 65191272 -85592281 - AluY SINE Alu -6 305 2 315 313 12 19 chr11 65191409 65191569 -85591984 + L1MEc LINE L1 22 180 -6216 725 126 36 0 chr11 65191570 65191681 -85591872 + AluSq SINE Alu 74 188 -125 2414 63 0 3 chr11 65191777 65192107 -85591446 - AluSx SINE Alu 0 329 1 498 33 0 0 chr11 65192107 65192167 -85591386 + (TTA)n Simple_repeat Simple_repeat 3 62 0 2245 87 0 7 chr11 65192168 65192456 -85591097 - AluSx SINE Alu -26 286 1 21 0 0 0 chr11 65192716 65192737 -85590816 + AT_rich Low_complexity Low_complexity 1 21 0 2421 82 0 19 chr11 65193187 65193502 -85590051 - AluSc SINE Alu 0 309 1 1926 129 21 0 chr11 65193505 65193792 -85589761 - AluSx SINE Alu -19 293 1 2171 149 89 56 chr11 65193815 65194330 -85589223 - Cheshire DNA MER1_type -2 2418 1887 578 171 48 0 chr11 65194335 65194440 -85589113 + MER66A LTR ERV1 6 115 -363 6106 76 13 16 chr11 65194440 65195192 -85588361 + L1PA12 LINE L1 5327 6078 -90 1600 127 97 86 chr11 65195192 65195563 -85587990 - THE1C LTR MaLR 0 375 1 6106 76 13 16 chr11 65195563 65195643 -85587910 + L1PA12 LINE L1 6078 6157 -11 1584 159 166 7 chr11 65195643 65195951 -85587602 + MER66B LTR ERV1 100 456 -30 4906 183 17 1 chr11 65195987 65196875 -85586678 - Cheshire DNA MER1_type -612 1808 907 1347 194 136 39 chr11 65196875 65197257 -85586296 - MLT1C LTR MaLR 0 467 49 2751 165 33 31 chr11 65197317 65197382 -85586171 - Cheshire DNA MER1_type -1509 911 848 1705 159 20 43 chr11 65197382 65197684 -85585869 - AluJo SINE Alu -17 295 1 2751 165 33 31 chr11 65197684 65198136 -85585417 - Cheshire DNA MER1_type -1572 848 390 2331 116 0 0 chr11 65198136 65198446 -85585107 + AluSg SINE Alu 1 310 0 2751 165 33 31 chr11 65198446 65198498 -85585055 - Cheshire DNA MER1_type -2030 390 340 25 0 0 0 chr11 65198598 65198623 -85584930 + GC_rich Low_complexity Low_complexity 1 25 0 225 0 0 0 chr11 65198643 65198668 -85584885 + (T)n Simple_repeat Simple_repeat 1 25 0 5020 180 22 47 chr11 65198766 65199419 -85584134 + L1PA16 LINE L1 4415 5083 -1083 369 174 14 0 chr11 65199419 65199488 -85584065 + MER41D LTR ERV1 42 111 -446 5020 180 22 47 chr11 65199488 65200560 -85582993 + L1PA16 LINE L1 5083 6159 -7 1917 139 14 3 chr11 65200621 65200908 -85582645 + AluSx SINE Alu 2 291 -21 242 345 54 6 chr11 65200908 65201076 -85582477 + HAL1 LINE L1 2328 2503 -4 2763 157 0 0 chr11 65201467 65201893 -85581660 + MER41D LTR ERV1 1 426 -131 1633 173 46 11 chr11 65203004 65203288 -85580265 - AluSx SINE Alu -16 296 3 264 265 126 43 chr11 65203504 65203586 -85579967 - MIR SINE MIR -3 259 185 355 232 56 32 chr11 65203586 65203711 -85579842 + MER94 DNA DNA 4 131 -3 264 265 126 43 chr11 65203711 65203858 -85579695 - MIR SINE MIR -77 185 11 1122 209 163 11 chr11 65204050 65204327 -85579226 - Cheshire DNA MER1_type -2101 319 1 2307 130 8 28 chr11 65204362 65204716 -85578837 - MSTC LTR MaLR 0 428 82 2226 132 0 0 chr11 65204784 65205088 -85578465 - AluSx SINE Alu -6 306 3 677 182 65 116 chr11 65205198 65205334 -85578219 - MER67C LTR ERV1 -192 322 228 3844 108 0 11 chr11 65205334 65205882 -85577671 - L1PA15 LINE L1 -6 6159 5618 677 182 65 116 chr11 65205882 65205995 -85577558 - MER67C LTR ERV1 -286 228 111 1686 164 0 54 chr11 65206010 65206327 -85577226 - AluJb SINE Alu -12 300 1 285 231 54 69 chr11 65206679 65206809 -85576744 + Charlie2 DNA MER1_type 1 128 -2654 1690 95 8 37 chr11 65206938 65207181 -85576372 - AluSx SINE Alu -76 236 1 374 75 0 0 chr11 65207268 65207321 -85576232 - AluSp/q SINE Alu -3 300 248 2473 94 3 0 chr11 65207353 65207662 -85575891 - AluSp SINE Alu -3 310 1 367 321 52 0 chr11 65207669 65207803 -85575750 + Charlie2 DNA MER1_type 182 322 -2460 319 228 30 20 chr11 65207787 65207888 -85575665 + Charlie2 DNA MER1_type 1836 1937 -925 * 186 270 16 32 chr11 65208100 65208163 -85575390 - MIR SINE MIR -57 151 90 681 213 87 53 chr11 65208165 65208372 -85575181 - MER20 DNA MER1_type -4 215 2 2134 84 3 23 chr11 65208509 65208808 -85574745 - AluSq SINE Alu -20 293 1 22 0 0 0 chr11 65208816 65208838 -85574715 + AT_rich Low_complexity Low_complexity 1 22 0 564 226 97 56 chr11 65209715 65209910 -85573643 + MER58A DNA MER1_type 4 206 -18 1087 187 72 0 chr11 65210203 65210510 -85573043 - L1MC/D LINE L1 -719 5523 5198 27 0 0 0 chr11 65210510 65210537 -85573016 + AT_rich Low_complexity Low_complexity 1 27 0 2263 122 0 3 chr11 65210693 65210997 -85572556 - AluSx SINE Alu -9 303 1 2956 85 59 6 chr11 65210997 65211469 -85572084 + MER83B-int LTR ERV1 1999 2495 -4103 1330 135 127 4 chr11 65211469 65211698 -85571855 - LTR8 LTR ERV1 -434 257 1 4500 122 70 24 chr11 65211698 65212602 -85570951 + MER83B-int LTR ERV1 2737 3681 -2917 * 12897 99 42 23 chr11 65212600 65214190 -85569363 + MER83B-int LTR ERV1 3836 5476 -1122 2301 96 0 13 chr11 65214190 65214491 -85569062 - AluSp SINE Alu -16 297 1 12897 99 42 23 chr11 65214491 65214932 -85568621 + MER83B-int LTR ERV1 5476 5907 -691 2166 125 10 0 chr11 65214932 65215229 -85568324 - AluSx SINE Alu -12 300 1 282 229 114 34 chr11 65215359 65215376 -85568177 + MER83B-int LTR ERV1 2733 2747 -2133 1918 161 3 0 chr11 65215376 65215675 -85567878 + AluSx SINE Alu 2 301 -11 282 229 114 34 chr11 65215675 65215899 -85567654 + MER83B-int LTR ERV1 2747 2943 -1937 796 114 126 17 chr11 65215966 65216141 -85567412 + MER83B-int LTR ERV1 4169 4362 -3758 1733 127 101 4 chr11 65216147 65216423 -85567130 + AluJb SINE Alu 1 303 -9 1851 131 7 11 chr11 65216434 65216716 -85566837 + AluSc SINE Alu 3 283 -26 1143 166 16 5 chr11 65216737 65216924 -85566629 - MER49 LTR ERV1 -734 189 1 1918 121 16 26 chr11 65217092 65217398 -85566155 + AluSq SINE Alu 1 303 -10 1488 192 25 11 chr11 65217405 65217681 -85565872 + AluJo SINE Alu 3 282 -30 180 200 0 0 chr11 65218274 65218314 -85565239 + GA-rich Low_complexity Low_complexity 2 41 0 1228 148 6 0 chr11 65218440 65218616 -85564937 + AluSx SINE Alu 1 177 -135 848 163 0 0 chr11 65218729 65218858 -85564695 - FLAM_C SINE Alu -4 129 1 2960 221 60 17 chr11 65218860 65219738 -85563815 - L1M4 LINE L1 -939 5207 4292 * 3597 235 126 47 chr11 65219736 65220458 -85563095 + L1M4 LINE L1 2974 3638 -2508 1886 160 4 0 chr11 65220458 65220763 -85562790 - AluSx SINE Alu 0 306 1 3597 235 126 47 chr11 65220763 65221518 -85562035 + L1M4 LINE L1 3638 4332 -1814 1524 154 103 0 chr11 65221518 65221791 -85561762 - AluSg SINE Alu -9 301 1 3597 235 126 47 chr11 65221791 65221864 -85561689 + L1M4 LINE L1 4332 4398 -1748 1645 181 32 0 chr11 65221864 65222141 -85561412 + AluJb SINE Alu 2 287 -25 3597 235 126 47 chr11 65222141 65222240 -85561313 + L1M4 LINE L1 4398 4756 -1390 1162 90 0 0 chr11 65222242 65222387 -85561166 + LTR8 LTR ERV1 547 691 0 668 143 9 0 chr11 65222387 65222492 -85561061 + HUERS-P1 LTR ERV1 1 106 -6157 1164 215 56 0 chr11 65222492 65222780 -85560773 + L1M4 LINE L1 4746 5049 -1097 3440 132 13 2 chr11 65222785 65223308 -85560245 + L1PA7 LINE L1 5 533 -5928 27949 80 12 3 chr11 65223308 65227912 -85555641 + L1PA7 LINE L1 1825 6469 0 662 206 43 0 chr11 65227914 65228055 -85555498 + L1M4 LINE L1 5042 5188 -958 2316 115 3 0 chr11 65228910 65229222 -85554331 - AluSq SINE Alu 0 313 1 255 31 0 0 chr11 65229963 65229995 -85553558 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 2168 105 0 16 chr11 65229997 65230302 -85553251 - AluSx SINE Alu -12 300 1 192 77 0 0 chr11 65230512 65230538 -85553015 + (T)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr11 65231161 65231183 -85552370 + AT_rich Low_complexity Low_complexity 1 22 0 187 288 12 38 chr11 65231402 65231482 -85552071 - MIR SINE MIR -97 165 88 686 180 0 8 chr11 65232874 65232996 -85550557 - AluJ SINE Alu -9 303 183 900 152 8 0 chr11 65232998 65233130 -85550423 - AluJ SINE Alu -179 133 1 274 177 0 81 chr11 65233166 65233228 -85550325 + FLAM SINE Alu 76 132 -1 2932 157 31 34 chr11 65233344 65233929 -85549624 - L1MB3 LINE L1 -1 6182 5600 1188 197 119 0 chr11 65233930 65234199 -85549354 - L1MB3 LINE L1 -1314 4832 4532 192 77 0 0 chr11 65235919 65235945 -85547608 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 2463 74 3 0 chr11 65235952 65236261 -85547292 - AluSx SINE Alu -2 310 1 201 273 0 0 chr11 65236885 65236929 -85546624 - MIR SINE MIR -83 125 82 2162 109 3 16 chr11 65237120 65237424 -85546129 + AluSc SINE Alu 1 300 -9 252 0 0 0 chr11 65238821 65238849 -85544704 + (TTCC)n Simple_repeat Simple_repeat 2 29 0 2294 106 0 7 chr11 65238860 65239162 -85544391 - AluSg SINE Alu -10 300 1 2113 110 0 21 chr11 65239872 65240189 -85543364 + AluSx SINE Alu 1 311 0 1819 173 0 40 chr11 65240255 65240578 -85542975 - AluJo SINE Alu -2 310 1 189 323 0 32 chr11 65240673 65240735 -85542818 + L3b LINE CR1 1511 1570 -13 799 240 99 22 chr11 65240858 65241171 -85542382 - Charlie2 DNA MER1_type -546 2316 1980 4488 132 62 32 chr11 65241171 65241518 -85542035 - L1MA6 LINE L1 0 6300 5965 2408 99 0 10 chr11 65241518 65241832 -85541721 - AluSx SINE Alu -1 311 1 4488 132 62 32 chr11 65241832 65242139 -85541414 - L1MA6 LINE L1 -335 5965 5611 1228 211 4 25 chr11 65242139 65242381 -85541172 - MER8 DNA MER2_type -2 237 1 4488 132 62 32 chr11 65242381 65242590 -85540963 - L1MA6 LINE L1 -689 5611 5410 346 270 17 0 chr11 65242637 65242752 -85540801 - Charlie2 DNA MER1_type -862 2000 1884 307 289 116 26 chr11 65242758 65242990 -85540563 - Charlie2 DNA MER1_type -2464 318 66 590 256 43 12 chr11 65243408 65243572 -85539981 - MIR SINE MIR -12 250 82 582 294 62 73 chr11 65243647 65244031 -85539522 - L1M4 LINE L1 -1534 4612 4233 5320 118 28 6 chr11 65244158 65244985 -85538568 - L1PA15 LINE L1 0 6816 5972 252 77 0 0 chr11 65244985 65245024 -85538529 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 688 179 0 137 chr11 65245026 65245194 -85538359 - AluJb SINE Alu -31 281 137 15309 213 27 23 chr11 65245194 65248094 -85535459 - L1PA15 LINE L1 -815 5982 3094 1668 176 26 29 chr11 65248094 65248262 -85535291 - AluSx SINE Alu -1 311 143 2054 141 0 13 chr11 65248262 65248567 -85534986 - AluSx SINE Alu -11 301 1 1668 176 26 29 chr11 65248567 65248710 -85534843 - AluSx SINE Alu -169 143 1 15309 213 27 23 chr11 65248710 65249537 -85534016 - L1PA15 LINE L1 -3703 3094 2271 2377 94 0 7 chr11 65249537 65249834 -85533719 + AluSx SINE Alu 1 295 -17 15309 213 27 23 chr11 65249834 65250266 -85533287 - L1PA15 LINE L1 -4526 2271 1842 4797 70 0 0 chr11 65250266 65250853 -85532700 - LTR14C LTR ERVK 0 587 1 15309 213 27 23 chr11 65250853 65251009 -85532544 - L1PA15 LINE L1 -4955 1842 1688 1483 108 0 0 chr11 65251009 65251195 -85532358 - AluSc SINE Alu -123 186 1 15309 213 27 23 chr11 65251195 65251523 -85532030 - L1PA15 LINE L1 -5109 1688 1285 371 158 30 133 chr11 65251691 65251730 -85531823 - L1MA7 LINE L1 0 6291 6250 2134 155 0 0 chr11 65251730 65252033 -85531520 - AluSx SINE Alu -9 303 1 371 158 30 133 chr11 65252033 65252158 -85531395 - L1MA7 LINE L1 -41 6250 6144 1797 172 3 10 chr11 65252159 65252467 -85531086 - AluJo SINE Alu -3 309 4 1968 162 26 9 chr11 65252816 65253155 -85530398 - MER7A DNA MER2_type 0 346 4 429 275 36 7 chr11 65253259 65253309 -85530244 - MIR SINE MIR 0 262 215 2293 100 3 3 chr11 65253309 65253608 -85529945 - AluSq SINE Alu -14 299 1 429 275 36 7 chr11 65253608 65253624 -85529929 - MIR SINE MIR -47 215 201 216 0 0 0 chr11 65253624 65253648 -85529905 + (CA)n Simple_repeat Simple_repeat 2 25 0 429 275 36 7 chr11 65253648 65253718 -85529835 - MIR SINE MIR -61 201 121 326 278 69 52 chr11 65253973 65254146 -85529407 + MER5B DNA MER1_type 3 178 0 202 262 60 0 chr11 65255646 65255730 -85527823 + MIR SINE MIR 46 134 -128 215 192 19 19 chr11 65255893 65255945 -85527608 - MIR3 SINE MIR -7 201 150 331 276 72 55 chr11 65256840 65257021 -85526532 + MIR3 SINE MIR 7 190 -18 838 239 89 93 chr11 65259324 65259386 -85524167 - MLT1D LTR MaLR -4 501 440 2264 109 0 0 chr11 65259386 65259688 -85523865 + AluSc SINE Alu 1 302 -7 8759 42 1 1 chr11 65259689 65260658 -85522895 + LTR5 LTR ERVK 1 969 0 838 239 89 93 chr11 65260658 65261075 -85522478 - MLT1D LTR MaLR -64 441 22 2248 101 0 11 chr11 65261469 65261795 -85521758 - AluSp SINE Alu 0 323 1 7029 57 153 0 chr11 65262315 65263250 -85520303 - L1PA7 LINE L1 -2 6152 5186 228 299 26 39 chr11 65263526 65263603 -85519950 + MER5B DNA MER1_type 1 76 -102 2267 80 30 7 chr11 65263893 65264195 -85519358 + AluSc SINE Alu 1 309 0 624 208 129 6 chr11 65264231 65264409 -85519144 + L1MB4 LINE L1 5981 6180 0 583 259 157 59 chr11 65265193 65265443 -85518110 + HAL1 LINE L1 1025 1249 -1258 1853 166 32 0 chr11 65265443 65265727 -85517826 + AluJb SINE Alu 1 293 -19 583 259 157 59 chr11 65265727 65266152 -85517401 + HAL1 LINE L1 1249 1766 -741 257 267 60 26 chr11 65266444 65266560 -85516993 - L2 LINE L2 -221 3051 2932 563 212 24 35 chr11 65266706 65266876 -85516677 - MER20 DNA MER1_type 0 219 52 2101 104 14 21 chr11 65267343 65267631 -85515922 + AluSx SINE Alu 6 291 -21 407 305 77 9 chr11 65268409 65268557 -85514996 + MIR SINE MIR 11 182 -80 423 234 47 31 chr11 65268557 65268685 -85514868 - MER94 DNA DNA -3 131 2 407 305 77 9 chr11 65268685 65268769 -85514784 + MIR SINE MIR 182 259 -3 716 157 83 25 chr11 65268770 65268974 -85514579 + L1MA9 LINE L1 6097 6312 0 2103 138 0 3 chr11 65269100 65269398 -85514155 + AluJb SINE Alu 1 297 -15 453 253 191 16 chr11 65269654 65269848 -85513705 - MIR SINE MIR -21 241 14 180 111 0 0 chr11 65271122 65271149 -85512404 + (T)n Simple_repeat Simple_repeat 1 27 0 573 311 70 42 chr11 65271269 65271655 -85511898 + L2 LINE L2 2889 3285 -28 2200 92 3 10 chr11 65271758 65271886 -85511667 + AluSg SINE Alu 1 128 -182 207 0 0 0 chr11 65271886 65271909 -85511644 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2200 92 3 10 chr11 65271909 65272073 -85511480 + AluSg SINE Alu 128 291 -19 2397 85 0 0 chr11 65272115 65272408 -85511145 + AluSx SINE Alu 4 296 -16 220 279 29 58 chr11 65272419 65272523 -85511030 - MIR SINE MIR -113 149 49 22 35 0 0 chr11 65272684 65272713 -85510840 + AT_rich Low_complexity Low_complexity 1 29 0 2271 109 0 13 chr11 65272824 65273157 -85510396 + AluSx SINE Alu 1 312 0 314 239 33 0 chr11 65273295 65273387 -85510166 + GA-rich Low_complexity Low_complexity 1 95 0 261 0 0 0 chr11 65274657 65274686 -85508867 + (TG)n Simple_repeat Simple_repeat 2 30 0 1788 142 10 51 chr11 65274686 65274982 -85508571 - AluJo SINE Alu -28 284 1 21 0 0 0 chr11 65275396 65275417 -85508136 + AT_rich Low_complexity Low_complexity 1 21 0 219 308 0 0 chr11 65275827 65275879 -85507674 + polypurine Low_complexity Low_complexity 1 52 0 438 267 144 14 chr11 65276143 65276289 -85507264 + MIR SINE MIR 72 236 -26 556 228 269 10 chr11 65276413 65276606 -85506947 - MIR SINE MIR -4 258 16 2099 131 3 10 chr11 65278203 65278515 -85505038 - AluSx SINE Alu -2 310 1 374 312 44 21 chr11 65278946 65279238 -85504315 + L1MDa LINE L1 30 651 -5879 350 166 51 166 chr11 65279846 65280021 -85503532 + L1MDa LINE L1 946 1100 -5443 733 92 10 0 chr11 65282519 65282617 -85500936 + AluSq/x SINE Alu 33 131 -182 248 371 28 42 chr11 65284961 65285104 -85498449 + L2 LINE L2 3125 3265 -7 * 328 333 0 0 chr11 65285075 65285162 -85498391 - L2 LINE L2 -2 3311 3225 755 123 0 0 chr11 65285245 65285351 -85498202 - AluSx SINE Alu -13 297 192 1250 57 0 0 chr11 65285352 65285493 -85498060 - AluSx SINE Alu -171 141 1 3770 189 89 94 chr11 65285575 65285869 -85497684 + Charlie1a DNA MER1_type 1 295 -2466 2085 130 10 3 chr11 65285869 65286162 -85497391 - AluSx SINE Alu -14 298 4 3770 189 89 94 chr11 65286162 65286468 -85497085 + Charlie1a DNA MER1_type 295 601 -2160 2421 46 42 0 chr11 65286468 65286753 -85496800 + AluY SINE Alu 1 297 -14 3770 189 89 94 chr11 65286753 65287001 -85496552 + Charlie1a DNA MER1_type 601 849 -1912 2147 86 18 4 chr11 65287001 65287313 -85496240 + AluSx SINE Alu 1 316 0 3770 189 89 94 chr11 65287313 65287503 -85496050 + Charlie1a DNA MER1_type 849 1038 -1723 2126 120 0 7 chr11 65287503 65287795 -85495758 - AluSc SINE Alu -19 290 1 3770 189 89 94 chr11 65287795 65288142 -85495411 + Charlie1a DNA MER1_type 1038 1383 -72 1312 151 44 0 chr11 65288144 65288349 -85495204 - AluJo SINE Alu -13 299 86 219 286 64 29 chr11 65288503 65288643 -85494910 - L2 LINE L2 -310 2962 2818 318 187 0 40 chr11 65289328 65289403 -85494150 + LTR16C LTR ERVL 419 490 -1 229 222 196 0 chr11 65289640 65289755 -85493798 - MIR SINE MIR -65 143 11 262 223 99 74 chr11 65290318 65290439 -85493114 + MIR SINE MIR 108 231 -31 2083 106 0 35 chr11 65290476 65290788 -85492765 + AluSx SINE Alu 1 301 -11 291 256 7 80 chr11 65290978 65291115 -85492438 + L2 LINE L2 2924 3050 -222 533 347 27 0 chr11 65291170 65291392 -85492161 - MIR SINE MIR -6 256 29 217 352 111 19 chr11 65291573 65291681 -85491872 + MIR3 SINE MIR 42 159 -49 889 220 5 24 chr11 65291682 65291891 -85491662 - MER3 DNA MER1_type 0 209 5 330 315 89 20 chr11 65292885 65293031 -85490522 + MIR SINE MIR 34 189 -73 414 279 65 29 chr11 65293078 65293280 -85490273 - MIR SINE MIR -48 214 4 1931 136 17 0 chr11 65295232 65295534 -85488019 + AluSx SINE Alu 1 307 -5 2074 142 36 3 chr11 65295574 65295905 -85487648 - MER2 DNA MER2_type 0 344 3 2100 108 0 7 chr11 65296070 65296365 -85487188 + AluSg SINE Alu 1 293 -17 395 302 236 10 chr11 65296529 65296830 -85486723 + L2 LINE L2 2945 3313 0 376 251 164 18 chr11 65297673 65297844 -85485709 - MIR SINE MIR -65 197 2 647 0 0 0 chr11 65299645 65299723 -85483830 + AluYa5/8 SINE Alu 230 307 -4 198 0 0 0 chr11 65299850 65299872 -85483681 + (T)n Simple_repeat Simple_repeat 1 22 0 253 208 0 0 chr11 65300317 65300370 -85483183 + (CA)n Simple_repeat Simple_repeat 1 53 0 2041 113 0 7 chr11 65300387 65300688 -85482865 - AluSx SINE Alu -13 299 1 2077 121 0 0 chr11 65300875 65301164 -85482389 - AluSx SINE Alu -23 289 1 1985 118 0 0 chr11 65301376 65301663 -85481890 - AluSq SINE Alu -3 310 24 2021 124 0 0 chr11 65301831 65302121 -85481432 + AluSx SINE Alu 16 305 -7 1053 164 0 0 chr11 65302192 65302363 -85481190 - AluJ SINE Alu -5 307 137 342 326 0 0 chr11 65302363 65302452 -85481101 - L1MC4 LINE L1 -1339 6703 6615 333 260 0 62 chr11 65302367 65302463 -85481090 + L1MC4 LINE L1 6614 6703 -1339 * 369 255 0 69 chr11 65302469 65302571 -85480982 - L1MC4 LINE L1 -1339 6703 6609 763 177 31 0 chr11 65302571 65302701 -85480852 - AluJ SINE Alu -177 135 2 557 162 7 63 chr11 65303844 65303986 -85479567 - MER96B DNA MER1_type? -238 179 46 524 257 87 47 chr11 65304253 65304506 -85479047 - ORSL DNA AcHobo 0 275 13 17752 202 13 15 chr11 65304508 65305416 -85478137 + LTR10B-int LTR ERV1 797 1706 -6079 3436 194 34 59 chr11 65305416 65306394 -85477159 + LTR5 LTR ERVK 2 954 -15 17752 202 13 15 chr11 65306394 65308809 -85474744 + LTR10B-int LTR ERV1 1706 4112 -3673 319 269 0 0 chr11 65308797 65308875 -85474678 + LTR10B-int LTR ERV1 1414 1491 -5405 * 12034 252 35 34 chr11 65308870 65312271 -85471282 + LTR10B-int LTR ERV1 4099 7500 -285 2834 169 27 51 chr11 65312272 65312893 -85470660 + LTR10E LTR ERV1 1 609 0 1431 222 0 14 chr11 65312897 65313185 -85470368 + LTR10B-int LTR ERV1 6366 6649 0 1196 249 79 59 chr11 65313185 65313680 -85469873 + LTR10B LTR ERV1 1 505 0 2681 119 31 7 chr11 65313680 65314126 -85469427 + LTR10B-int LTR ERV1 1039 1495 -6321 239 229 0 0 chr11 65314142 65314190 -85469363 + MER4A LTR ERV1 51 98 -566 593 145 43 73 chr11 65314195 65314381 -85469172 + MER4A LTR ERV1 276 514 -150 522 256 40 40 chr11 65314382 65314609 -85468944 + LTR10B-int LTR ERV1 1412 1638 -6482 511 157 43 43 chr11 65314739 65314854 -85468699 + LTR10B-int LTR ERV1 6535 6649 0 1335 238 135 30 chr11 65314854 65315349 -85468204 + LTR10B LTR ERV1 1 547 0 2922 108 29 2 chr11 65315349 65315794 -85467759 + MER51-int LTR ERV1 1039 1495 -6321 239 229 0 0 chr11 65315810 65315858 -85467695 + MER4A LTR ERV1 51 98 -566 726 139 59 67 chr11 65315863 65316065 -85467488 + MER4A LTR ERV1 276 534 -130 8970 93 61 14 chr11 65316065 65316852 -85466701 + MER51B-int LTR ERV1 1802 2551 -5265 1986 119 0 28 chr11 65316852 65317170 -85466383 + AluSg SINE Alu 1 309 -1 8970 93 61 14 chr11 65317170 65317840 -85465713 + MER51B-int LTR ERV1 2551 3327 -4489 1786 135 78 71 chr11 65317822 65317952 -85465601 + MER51B-int LTR ERV1 2829 2957 -2989 * 1939 131 0 13 chr11 65317952 65318265 -85465288 + AluSc SINE Alu 1 309 0 1786 135 78 71 chr11 65318265 65318617 -85464936 + MER51B-int LTR ERV1 2957 3172 -2774 * 2004 110 15 8 chr11 65318597 65319002 -85464551 + MER51B-int LTR ERV1 2211 2662 -2555 * 7967 130 28 5 chr11 65318979 65320634 -85462919 + MER51B-int LTR ERV1 5407 7147 -390 622 207 22 7 chr11 65320636 65320771 -85462782 + LTR54B LTR ERV1 5 141 -357 2016 156 64 3 chr11 65320771 65321097 -85462456 + MER51B-int LTR ERV1 7470 7815 -1 2490 111 50 0 chr11 65321099 65321458 -85462095 + MER51B LTR ERV1 1 377 0 1580 169 4 0 chr11 65321458 65321718 -85461835 + AluJb SINE Alu 19 279 -33 2234 107 3 0 chr11 65322443 65322753 -85460800 - AluSx SINE Alu -1 311 1 1420 149 7 2 chr11 65322814 65323084 -85460469 - L1PA15-16 LINE L1 -3836 3013 2738 1397 234 44 3 chr11 65323074 65323437 -85460116 + L1P LINE L1 4779 5156 -990 * 496 128 13 0 chr11 65324690 65324768 -85458785 + MADE1 DNA Mariner 1 79 -1 5807 138 29 2 chr11 65325349 65326570 -85456983 + L1PB1 LINE L1 4893 6148 -3 230 232 85 0 chr11 65326581 65326663 -85456890 - L1MC1 LINE L1 -281 6052 5964 367 202 179 28 chr11 65326787 65326946 -85456607 - MER20B DNA MER1_type -5 214 35 301 329 42 11 chr11 65327511 65327690 -85455863 - MIR SINE MIR -54 208 25 208 314 58 0 chr11 65327735 65327821 -85455732 - MIR SINE MIR -62 200 110 321 140 0 0 chr11 65328231 65328288 -85455265 + (GGGGA)n Simple_repeat Simple_repeat 2 58 0 304 288 170 26 chr11 65328853 65329006 -85454547 - L1MC1 LINE L1 -1926 5882 5708 1968 108 14 7 chr11 65329229 65329524 -85454029 + AluSx SINE Alu 1 297 -15 326 340 90 0 chr11 65330675 65330819 -85452734 + MIR SINE MIR 85 241 -21 265 224 60 15 chr11 65330987 65331054 -85452499 + MIR SINE MIR 31 100 -162 189 74 0 0 chr11 65331613 65331640 -85451913 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 180 0 0 0 chr11 65332772 65332792 -85450761 + (A)n Simple_repeat Simple_repeat 1 20 0 2945 100 8 33 chr11 65332792 65333280 -85450273 - MER4-int LTR ERV1 -4584 2014 1539 741 203 0 0 chr11 65333281 65333414 -85450139 + FLAM_C SINE Alu 1 133 0 527 130 5 245 chr11 65333435 65333567 -85449986 + MLT1D LTR MaLR 355 429 -76 858 159 8 0 chr11 65333567 65333699 -85449854 - FLAM_C SINE Alu 0 133 1 527 130 5 245 chr11 65333699 65333758 -85449795 + MLT1D LTR MaLR 429 500 -5 2206 85 0 0 chr11 65334179 65334515 -85449038 + AluSg SINE Alu 2 337 0 1196 166 40 0 chr11 65334520 65334719 -85448834 - MER39 LTR ERV1 -234 473 267 713 133 6 121 chr11 65334746 65334919 -85448634 - MER21A LTR ERV1 -766 165 13 363 245 0 29 chr11 65335697 65335799 -85447754 - AluJ/FLAM SINE Alu -203 99 1 243 163 0 0 chr11 65336031 65336080 -85447473 + MLT1C LTR MaLR 186 234 -233 207 278 33 67 chr11 65336625 65336715 -85446838 + L3 LINE CR1 1480 1566 -11 901 248 83 20 chr11 65336813 65337011 -85446542 - MLT1C LTR MaLR 0 467 248 2076 113 3 13 chr11 65337011 65337312 -85446241 - AluSq SINE Alu -15 298 1 901 248 83 20 chr11 65337312 65337367 -85446186 - MLT1C LTR MaLR -219 248 198 1990 111 7 13 chr11 65338014 65338320 -85445233 - AluSx SINE Alu -8 304 1 182 244 45 24 chr11 65338392 65338468 -85445085 - MIR SINE MIR -98 110 33 274 200 40 0 chr11 65338946 65339021 -85444532 - L1ME4a LINE L1 -195 5926 5849 1353 177 16 59 chr11 65339459 65339588 -85443965 + AluJb SINE Alu 9 142 -170 2113 104 4 4 chr11 65339588 65339866 -85443687 + AluSc SINE Alu 2 310 0 210 32 0 32 chr11 65339866 65339897 -85443656 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1353 177 16 59 chr11 65339897 65340071 -85443482 + AluJb SINE Alu 142 300 -12 708 253 61 55 chr11 65340145 65340457 -85443096 - HAL1 LINE L1 -670 1837 1524 2131 100 7 17 chr11 65341749 65342050 -85441503 + AluSq SINE Alu 1 298 -15 210 37 0 0 chr11 65342069 65342096 -85441457 + (CA)n Simple_repeat Simple_repeat 1 27 0 320 326 67 45 chr11 65342108 65342216 -85441337 + L1ME3A LINE L1 5781 5896 -274 2106 146 0 3 chr11 65342216 65342524 -85441029 + AluSx SINE Alu 1 307 -5 320 326 67 45 chr11 65342524 65342593 -85440960 + L1ME3A LINE L1 5896 5962 -208 753 206 60 17 chr11 65343932 65344207 -85439346 + MER4D LTR ERV1 577 903 0 1750 245 42 53 chr11 65344215 65344803 -85438750 - MER21B LTR ERV1 -125 738 157 2014 124 39 44 chr11 65344803 65345135 -85438418 + THE1C LTR MaLR 1 333 -95 1870 126 0 8 chr11 65345135 65345397 -85438156 + AluSx SINE Alu 42 301 -11 2014 124 39 44 chr11 65345397 65345493 -85438060 + THE1C LTR MaLR 333 428 0 2084 190 18 29 chr11 65345590 65346093 -85437460 + MER41B LTR ERV1 132 474 -12 343 173 0 40 chr11 65346093 65346168 -85437385 + FLAM_A SINE Alu 46 117 -16 588 224 49 6 chr11 65346607 65346790 -85436763 - AluSg/x SINE Alu -4 308 118 1423 163 29 14 chr11 65347312 65347588 -85435965 + Tigger3(Golem) DNA MER2_type 69 3038 0 1674 176 3 10 chr11 65347935 65348225 -85435328 + AluJo SINE Alu 1 288 -24 362 193 74 52 chr11 65348234 65348369 -85435184 + L1MA7 LINE L1 6128 6265 -26 1939 166 0 0 chr11 65348374 65348657 -85434896 + AluSx SINE Alu 1 283 -29 1873 142 0 7 chr11 65348956 65349231 -85434322 + AluJb SINE Alu 1 273 -39 234 239 28 56 chr11 65349239 65349310 -85434243 + MIR3 SINE MIR 9 77 -131 442 306 143 5 chr11 65349316 65349512 -85434041 - MIR SINE MIR -3 259 37 576 200 100 67 chr11 65349579 65349759 -85433794 - AluJb SINE Alu -12 300 115 401 234 72 0 chr11 65349796 65349907 -85433646 - AluSc SINE Alu -185 124 6 1663 159 14 7 chr11 65350601 65350891 -85432662 + MSTC LTR MaLR 137 428 0 1308 218 136 9 chr11 65350926 65351265 -85432288 + Cheshire DNA MER1_type 1 382 -2038 2367 98 0 0 chr11 65351290 65351587 -85431966 - AluSx SINE Alu -15 297 1 1438 190 3 3 chr11 65351587 65351892 -85431661 - L1MA6 LINE L1 -351 5949 5645 949 230 10 0 chr11 65351894 65352090 -85431463 - MER8 DNA MER2_type -2 237 40 356 282 9 0 chr11 65352098 65352208 -85431345 - Charlie2 DNA MER1_type -868 1994 1884 526 169 7 63 chr11 65353498 65353640 -85429913 - MER96B DNA MER1_type? -238 179 46 481 257 87 47 chr11 65353907 65354160 -85429393 - ORSL DNA AcHobo 0 275 13 4560 230 12 35 chr11 65354162 65355068 -85428485 + HERVI LTR ERV1 797 1673 -6112 3300 217 33 60 chr11 65355068 65356063 -85427490 + LTR5 LTR ERVK 2 969 0 4560 230 12 35 chr11 65356063 65356286 -85427267 + HERVI LTR ERV1 1673 1900 -5885 2256 237 9 0 chr11 65356605 65357163 -85426390 - L1P LINE L1 -3201 2945 2383 1132 136 49 0 chr11 65357163 65357325 -85426228 - AluSg/x SINE Alu -9 303 134 2162 121 7 0 chr11 65357325 65357622 -85425931 - AluSq SINE Alu -14 299 1 2346 82 7 7 chr11 65358220 65358513 -85425040 - AluSp SINE Alu -20 293 1 2381 96 3 0 chr11 65358532 65358834 -85424719 - AluSp SINE Alu -7 306 4 1979 130 0 3 chr11 65358879 65359164 -85424389 - AluSx SINE Alu -28 284 1 2232 103 23 0 chr11 65359874 65360174 -85423379 + AluSq SINE Alu 1 307 -6 1321 106 0 0 chr11 65360174 65360344 -85423209 + AluSp SINE Alu 134 303 -10 324 187 27 0 chr11 65360344 65360419 -85423134 + MLT1A1 LTR MaLR 74 150 -215 1171 214 0 46 chr11 65361386 65361671 -85421882 - AluJo SINE Alu -11 301 30 1050 181 22 103 chr11 65361675 65361929 -85421624 + LTR56 LTR ERV1 99 288 -149 2227 104 7 0 chr11 65361929 65362211 -85421342 + AluSg SINE Alu 1 285 -21 240 59 0 0 chr11 65362211 65362245 -85421308 + (CACAA)n Simple_repeat Simple_repeat 4 37 0 1050 181 22 103 chr11 65362249 65362388 -85421165 + LTR56 LTR ERV1 288 437 0 2199 135 3 0 chr11 65362651 65362955 -85420598 - AluSx SINE Alu -7 305 1 180 200 0 0 chr11 65363080 65363120 -85420433 + CT-rich Low_complexity Low_complexity 2 41 0 1084 225 39 35 chr11 65363714 65363999 -85419554 - AluJo SINE Alu -16 286 1 2451 54 3 7 chr11 65364006 65364303 -85419250 - AluY SINE Alu -14 297 2 291 319 12 19 chr11 65364440 65364600 -85418953 + L1MEc LINE L1 22 180 -6216 776 117 36 0 chr11 65364601 65364712 -85418841 + AluSq SINE Alu 74 188 -125 291 71 0 0 chr11 65364808 65364850 -85418703 + (TTA)n Simple_repeat Simple_repeat 2 43 0 2355 68 0 4 chr11 65364856 65365136 -85418417 - AluSx SINE Alu -33 279 1 2206 97 0 7 chr11 65365136 65365482 -85418071 - AluSx SINE Alu 0 344 1 22 0 0 0 chr11 65365743 65365765 -85417788 + AT_rich Low_complexity Low_complexity 1 22 0 344 248 120 38 chr11 65366210 65366343 -85417210 - L1MEc LINE L1 -2918 3297 2121 733 92 10 0 chr11 65368101 65368199 -85415354 + AluSq/x SINE Alu 33 131 -182 248 371 28 42 chr11 65370544 65370687 -85412866 + L2 LINE L2 3125 3265 -7 * 328 333 0 0 chr11 65370658 65370745 -85412808 - L2 LINE L2 -2 3311 3225 755 123 0 0 chr11 65370828 65370934 -85412619 - AluSx SINE Alu -13 299 194 1250 57 0 0 chr11 65370935 65371076 -85412477 - AluSx SINE Alu -172 141 1 882 220 78 40 chr11 65371158 65371454 -85412099 + Charlie1a DNA MER1_type 1 307 -1148 2103 123 3 7 chr11 65371456 65371748 -85411805 - AluSc SINE Alu -18 291 1 2672 219 20 10 chr11 65371748 65372521 -85411032 - L1PA15-16 LINE L1 -3755 3094 2310 410 288 4 25 chr11 65373217 65373460 -85410093 - AluSx SINE Alu -73 239 2 246 238 69 30 chr11 65373813 65373914 -85409639 + Charlie2 DNA MER1_type 1 105 -2757 2333 101 6 25 chr11 65373941 65374258 -85409295 - AluSq SINE Alu -2 311 1 363 73 0 0 chr11 65374343 65374398 -85409155 - AluSp/q SINE Alu -1 302 248 2513 91 3 0 chr11 65374430 65374739 -85408814 - AluSp SINE Alu -3 310 1 340 321 52 0 chr11 65374746 65374880 -85408673 + Charlie2 DNA MER1_type 182 322 -2540 286 228 30 20 chr11 65374864 65374965 -85408588 + Charlie2 DNA MER1_type 1836 1937 -925 * 692 246 63 29 chr11 65375243 65375450 -85408103 - MER20 DNA MER1_type -4 215 2 2227 74 3 23 chr11 65375588 65375887 -85407666 - AluSq SINE Alu -20 293 1 360 257 164 18 chr11 65377688 65377859 -85405694 + MIR SINE MIR 2 197 -65 209 290 29 14 chr11 65378758 65378827 -85404726 - L2 LINE L2 -67 3205 3136 2317 100 0 7 chr11 65379168 65379469 -85404084 - AluSg SINE Alu -11 299 1 504 200 11 67 chr11 65379634 65379814 -85403739 + MER2 DNA MER2_type 3 172 -173 1110 167 92 66 chr11 65380321 65380669 -85402884 + Cheshire DNA MER1_type 2062 2418 -2 1942 129 21 0 chr11 65380692 65380979 -85402574 + AluSx SINE Alu 1 293 -19 2278 84 3 23 chr11 65380982 65381292 -85402261 + AluSc SINE Alu 1 304 -5 583 224 21 52 chr11 65381306 65381498 -85402055 + L1ME1 LINE L1 5931 6116 -50 2118 122 7 7 chr11 65381513 65381816 -85401737 + AluSp SINE Alu 1 303 -10 288 0 0 0 chr11 65381827 65381859 -85401694 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 198 0 0 0 chr11 65381860 65381882 -85401671 + (CAGT)n Simple_repeat Simple_repeat 1 22 0 2193 111 3 16 chr11 65383220 65383527 -85400026 - AluSc SINE Alu -6 303 1 215 284 21 95 chr11 65383666 65383761 -85399792 + MIR SINE MIR 38 125 -83 2499 74 3 0 chr11 65384385 65384696 -85398857 + AluSx SINE Alu 1 312 0 192 77 0 0 chr11 65384700 65384726 -85398827 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 1102 201 119 0 chr11 65386447 65386716 -85396837 + L1MB3 LINE L1 4532 4832 -1314 2884 157 31 36 chr11 65386717 65387303 -85396250 + L1MB3 LINE L1 5600 6182 -1 254 177 0 81 chr11 65387419 65387481 -85396072 - FLAM SINE Alu -1 132 76 588 183 0 10 chr11 65387517 65387772 -85395781 + AluJ SINE Alu 1 303 -9 241 328 29 58 chr11 65389163 65389334 -85394219 + MIR SINE MIR 88 253 -9 22 0 0 0 chr11 65389462 65389484 -85394069 + AT_rich Low_complexity Low_complexity 1 22 0 2201 85 7 0 chr11 65590119 65590413 -85193140 - AluSx SINE Alu -16 296 1 197 302 62 52 chr11 65590423 65590519 -85193034 - MIR SINE MIR -67 141 45 1894 138 10 7 chr11 65590550 65590847 -85192706 + AluSx SINE Alu 1 298 -14 394 330 87 11 chr11 65590856 65591041 -85192512 - MIR SINE MIR -2 260 62 879 107 15 0 chr11 65591182 65591313 -85192240 + AluSq/x SINE Alu 1 133 -179 2362 76 3 0 chr11 65591439 65591742 -85191811 - AluY SINE Alu -7 304 1 2009 131 3 0 chr11 65591774 65592065 -85191488 + AluSx SINE Alu 1 292 -20 2027 128 10 0 chr11 65592116 65592414 -85191139 + AluSq SINE Alu 1 301 -12 845 182 91 0 chr11 65592583 65592737 -85190816 + AluJb SINE Alu 136 303 -9 1898 152 0 0 chr11 65592834 65593140 -85190413 + AluSq SINE Alu 1 306 0 2041 123 0 3 chr11 65593146 65593446 -85190107 + AluSx SINE Alu 1 299 -13 1941 133 8 93 chr11 65593771 65594033 -85189520 - MER47A DNA MER2_type -1957 366 148 2103 73 28 7 chr11 65594033 65594319 -85189234 + AluSc SINE Alu 1 292 -17 1941 133 8 93 chr11 65594319 65594453 -85189100 - MER47A DNA MER2_type -2175 148 4 818 233 225 12 chr11 65594662 65594775 -85188778 - AluJo SINE Alu 0 302 214 2118 86 40 10 chr11 65594775 65595077 -85188476 - AluY SINE Alu 0 311 1 1606 88 5 0 chr11 65595077 65595292 -85188261 - AluSp SINE Alu -97 216 1 818 233 225 12 chr11 65595292 65595426 -85188127 - AluJo SINE Alu -87 215 1 2347 57 7 7 chr11 65595480 65595776 -85187777 - AluY SINE Alu -15 296 1 1888 115 10 38 chr11 65595780 65596094 -85187459 - AluSx SINE Alu -4 308 4 2093 114 0 3 chr11 65596107 65596405 -85187148 - AluY SINE Alu -14 297 1 710 154 0 26 chr11 65596441 65596558 -85186995 + AluJo SINE Alu 21 134 -178 1961 109 7 13 chr11 65596657 65596960 -85186593 + AluSc SINE Alu 1 301 -8 256 241 126 35 chr11 65597221 65597288 -85186265 + MER58 DNA MER1_type 1 79 -136 2373 75 3 0 chr11 65597288 65597595 -85185958 - AluY SINE Alu -3 308 1 256 241 126 35 chr11 65597595 65597614 -85185939 + MER58 DNA MER1_type 79 95 -120 1971 127 13 7 chr11 65597627 65597934 -85185619 + AluSx SINE Alu 3 311 -1 480 181 0 48 chr11 65597945 65598050 -85185503 - FLAM_A SINE Alu -32 110 11 390 192 19 39 chr11 65598089 65598193 -85185360 + MER58 DNA MER1_type 2318 2419 -1 398 158 258 8 chr11 65598311 65598431 -85185122 + MIR SINE MIR 113 262 0 2264 76 3 3 chr11 65600226 65600529 -85183024 + AluY SINE Alu 1 303 -8 181 383 12 0 chr11 65600599 65600680 -85182873 + MIR3 SINE MIR 102 183 -25 731 292 56 4 chr11 65603454 65603687 -85179866 - MIR SINE MIR -6 256 12 1042 85 0 0 chr11 65604090 65604231 -85179322 + AluSg/x SINE Alu 135 275 -37 243 323 100 8 chr11 65604258 65604388 -85179165 + MIR SINE MIR 51 192 -16 273 278 0 0 chr11 65606182 65606254 -85177299 + MIR SINE MIR 73 144 -118 1354 103 44 10 chr11 65606735 65606938 -85176615 - AluSx SINE Alu -12 298 89 424 106 0 0 chr11 65606947 65607013 -85176540 - Alu SINE Alu -5 307 242 835 98 0 0 chr11 65607013 65607125 -85176428 - AluSx SINE Alu -200 112 1 2199 87 13 0 chr11 65608236 65608535 -85175018 - AluY SINE Alu -8 303 1 258 298 12 0 chr11 65608619 65608703 -85174850 + MIR SINE MIR 170 254 -8 247 33 0 0 chr11 65608704 65608762 -85174791 - AluSp/q SINE Alu 0 311 254 545 28 14 0 chr11 65608790 65608861 -85174692 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 1011 382 10 54 chr11 65608862 65609158 -85174395 - AluSq SINE Alu -18 285 3 2212 78 3 0 chr11 65609322 65609639 -85173914 - AluSq SINE Alu 0 318 1 460 284 146 14 chr11 65610030 65610305 -85173248 - L3 LINE CR1 -3 1574 1264 249 71 0 95 chr11 65610305 65610347 -85173206 - tRNA-Gln-CAG tRNA tRNA -37 38 1 1602 218 56 40 chr11 65610466 65610965 -85172588 - L2 LINE L2 0 3313 2807 827 154 7 21 chr11 65611161 65611287 -85172266 + FLAM_C SINE Alu 2 127 -185 1706 131 10 58 chr11 65611287 65611600 -85171953 - AluSg SINE Alu -12 298 1 827 154 7 21 chr11 65611600 65611616 -85171937 + FLAM_C SINE Alu 127 142 -170 1757 166 10 0 chr11 65611635 65611931 -85171622 + AluSx SINE Alu 1 299 -13 1735 156 10 19 chr11 65612153 65612460 -85171093 - AluSx SINE Alu -8 304 1 21 0 0 0 chr11 65612663 65612684 -85170869 + AT_rich Low_complexity Low_complexity 1 21 0 2428 80 0 3 chr11 65612872 65613186 -85170367 - AluSq SINE Alu 0 313 1 1954 124 7 7 chr11 65613186 65613485 -85170068 - AluSq SINE Alu -14 299 1 270 0 0 0 chr11 65613491 65613521 -85170032 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1939 107 0 4 chr11 65613671 65613941 -85169612 - AluSx SINE Alu -43 269 1 1166 92 0 6 chr11 65615353 65615516 -85168037 - AluJb SINE Alu -15 297 136 2234 79 3 28 chr11 65615530 65615847 -85167706 - AluY SINE Alu -2 309 1 492 237 96 40 chr11 65615919 65616096 -85167457 + MIR SINE MIR 71 257 -5 245 188 42 0 chr11 65616904 65616952 -85166601 + L2 LINE L2 3206 3255 -17 1067 66 0 0 chr11 65617044 65617181 -85166372 - AluY SINE Alu -3 308 172 2235 68 30 0 chr11 65617248 65617544 -85166009 + AluY SINE Alu 1 305 -6 2044 88 30 13 chr11 65617632 65617937 -85165616 - AluY SINE Alu -1 310 1 208 194 15 45 chr11 65617944 65618011 -85165542 - MIR SINE MIR -51 211 147 2200 115 0 10 chr11 65618032 65618345 -85165208 + AluSq SINE Alu 1 310 -3 2412 57 0 3 chr11 65618372 65618669 -85164884 + AluY SINE Alu 1 296 -15 1794 109 8 11 chr11 65619077 65619344 -85164209 - AluSx SINE Alu -8 304 39 437 191 183 8 chr11 65619345 65619476 -85164077 - MIR SINE MIR -6 256 103 881 220 108 9 chr11 65619539 65619771 -85163782 - AluJb SINE Alu -57 255 1 217 277 153 0 chr11 65620117 65620223 -85163330 - MIR SINE MIR -45 163 38 329 290 75 0 chr11 65620346 65620439 -85163114 - MIR SINE MIR -113 149 50 1256 148 156 4 chr11 65621255 65621512 -85162041 - AluJo SINE Alu -6 296 1 1985 117 3 10 chr11 65622948 65623248 -85160305 + AluY SINE Alu 1 298 -13 23 0 0 0 chr11 65623478 65623501 -85160052 + GC_rich Low_complexity Low_complexity 1 23 0 315 0 0 0 chr11 65623513 65623548 -85160005 + (A)n Simple_repeat Simple_repeat 1 35 0 1420 130 20 20 chr11 65623555 65623802 -85159751 + AluSg SINE Alu 56 302 -8 836 222 52 21 chr11 65623802 65624066 -85159487 + LTR24 LTR ERV1 233 467 0 2201 111 0 3 chr11 65624174 65624481 -85159072 - AluSc SINE Alu -3 306 1 2119 119 6 10 chr11 65624507 65624818 -85158735 - AluSq SINE Alu -3 310 1 201 203 16 109 chr11 65624839 65624912 -85158641 + MIR SINE MIR 147 225 -37 1943 113 7 3 chr11 65624912 65625194 -85158359 + AluSq SINE Alu 1 283 -30 414 0 0 0 chr11 65625197 65625243 -85158310 + (CA)n Simple_repeat Simple_repeat 1 46 0 201 203 16 109 chr11 65625243 65625293 -85158260 + MIR SINE MIR 227 262 0 233 374 72 0 chr11 65625448 65625587 -85157966 - L2 LINE L2 -218 3054 2906 890 112 0 0 chr11 65625800 65625925 -85157628 + AluJb SINE Alu 12 136 -176 2067 104 30 7 chr11 65625925 65626224 -85157329 + AluSg SINE Alu 1 306 -4 252 0 0 0 chr11 65626227 65626255 -85157298 + (A)n Simple_repeat Simple_repeat 1 28 0 1282 143 170 30 chr11 65626921 65627186 -85156367 + AluJb SINE Alu 1 302 -10 2306 65 0 7 chr11 65627298 65627604 -85155949 + AluY SINE Alu 1 304 -7 433 169 0 101 chr11 65627676 65627765 -85155788 + AluJb SINE Alu 203 282 -30 1986 105 48 10 chr11 65627982 65628277 -85155276 + AluSq SINE Alu 1 306 -7 939 94 8 0 chr11 65628317 65628444 -85155109 + AluSq/x SINE Alu 1 128 -185 2195 99 3 3 chr11 65628714 65629016 -85154537 + AluSg1 SINE Alu 1 302 -7 324 0 0 0 chr11 65629101 65629137 -85154416 + (TG)n Simple_repeat Simple_repeat 1 36 0 817 183 14 70 chr11 65629137 65629345 -85154208 - AluJo SINE Alu -30 282 87 1879 129 14 10 chr11 65629383 65629678 -85153875 - AluJo SINE Alu -16 296 1 991 153 0 12 chr11 65629712 65629875 -85153678 + FRAM SINE Alu 1 158 -18 2307 78 3 3 chr11 65629937 65630245 -85153308 + AluY SINE Alu 1 308 -3 2228 114 0 0 chr11 65630259 65630567 -85152986 + AluSx SINE Alu 1 308 -4 2187 104 3 10 chr11 65633257 65633566 -85149987 + AluSq SINE Alu 1 307 -6 190 276 49 65 chr11 65633566 65633680 -85149873 + MIR SINE MIR 8 121 -141 443 312 66 34 chr11 65633776 65634013 -85149540 + L2 LINE L2 2791 3037 -276 2284 95 13 0 chr11 65634013 65634319 -85149234 - AluSx SINE Alu -2 310 1 443 312 66 34 chr11 65634319 65634348 -85149205 + L2 LINE L2 3037 3064 -249 297 298 24 32 chr11 65637064 65637188 -85146365 + L2 LINE L2 2968 3090 -223 828 116 0 8 chr11 65637346 65637467 -85146086 - AluSc SINE Alu -188 121 2 900 114 0 0 chr11 65637500 65637623 -85145930 - FLAM_C SINE Alu -20 123 1 2030 133 0 0 chr11 65637680 65637980 -85145573 - AluSx SINE Alu -12 300 1 210 311 0 0 chr11 65638000 65638061 -85145492 + L2 LINE L2 3194 3254 -18 189 244 94 87 chr11 65639484 65639611 -85143942 + MIR SINE MIR 16 143 -65 22 0 0 0 chr11 65640203 65640225 -85143328 + AT_rich Low_complexity Low_complexity 1 22 0 391 241 56 87 chr11 65640807 65640883 -85142670 + L1MC3 LINE L1 4763 4840 -1306 2410 88 16 0 chr11 65640883 65641189 -85142364 - AluSp SINE Alu -2 311 1 391 241 56 87 chr11 65641189 65641307 -85142246 + L1MC3 LINE L1 4840 4951 -1195 2131 135 0 13 chr11 65641336 65641639 -85141914 - AluSx SINE Alu -13 299 1 2115 134 7 0 chr11 65641708 65642000 -85141553 - AluSx SINE Alu -18 294 1 947 131 0 0 chr11 65642032 65642169 -85141384 + AluJo SINE Alu 5 141 -171 27 0 0 26 chr11 65642223 65642244 -85141309 + AT_rich Low_complexity Low_complexity 1 22 -15 1368 88 2 282 chr11 65642244 65642641 -85140912 + AluSg SINE Alu 1 286 -14 27 0 0 26 chr11 65642641 65642657 -85140896 + AT_rich Low_complexity Low_complexity 22 37 0 873 226 51 32 chr11 65642657 65643012 -85140541 + L1MC3 LINE L1 5061 7694 -91 714 98 0 0 chr11 65643012 65643104 -85140449 + AluY SINE Alu 2 93 -218 1044 243 54 0 chr11 65643125 65643421 -85140132 + L1ME3A LINE L1 5526 5837 -333 2386 80 0 7 chr11 65643462 65643764 -85139789 + AluY SINE Alu 1 300 -11 1604 162 96 0 chr11 65644523 65644795 -85138758 - AluJb SINE Alu -14 298 1 2083 66 20 66 chr11 65644859 65645162 -85138391 - AluSp SINE Alu -24 289 1 359 87 0 58 chr11 65645179 65645248 -85138305 - Alu SINE Alu 0 300 236 1959 144 0 31 chr11 65645487 65645807 -85137746 + AluSg SINE Alu 1 310 0 2215 84 24 0 chr11 65645942 65646238 -85137315 - AluSx SINE Alu -9 303 1 2126 115 7 0 chr11 65646247 65646543 -85137010 - AluSq SINE Alu -15 298 1 2212 117 0 0 chr11 65647106 65647404 -85136149 - AluSq SINE Alu -15 298 1 1582 121 0 0 chr11 65647648 65647863 -85135690 + AluSg/x SINE Alu 91 305 -5 1729 147 11 8 chr11 65647872 65648138 -85135415 + AluSg SINE Alu 30 296 -14 400 304 35 17 chr11 65648147 65648262 -85135291 - MIR SINE MIR -2 260 144 2181 112 13 16 chr11 65648621 65648924 -85134629 + AluSx SINE Alu 1 302 -10 1814 168 10 3 chr11 65649150 65649448 -85134105 - AluSx SINE Alu -12 300 1 837 160 7 14 chr11 65649467 65649483 -85134070 - FLAM_C SINE Alu -169 143 128 1212 199 13 73 chr11 65649483 65649800 -85133753 + AluSg SINE Alu 1 298 -2 837 160 7 14 chr11 65649800 65649927 -85133626 - FLAM_C SINE Alu -184 128 1 382 285 35 97 chr11 65649934 65650011 -85133542 - MER5B DNA MER1_type -42 136 71 2169 100 7 7 chr11 65650011 65650302 -85133251 - AluSg SINE Alu -15 295 5 382 285 35 97 chr11 65650302 65650368 -85133185 - MER5B DNA MER1_type -107 71 2 422 336 31 8 chr11 65650434 65650562 -85132991 - MIR SINE MIR -123 139 9 1947 130 6 63 chr11 65650797 65650929 -85132624 + AluSg SINE Alu 1 139 -171 2156 112 0 17 chr11 65650929 65651224 -85132329 + AluSx SINE Alu 1 290 -22 1947 130 6 63 chr11 65651224 65651406 -85132147 + AluSg SINE Alu 139 297 -13 651 160 0 0 chr11 65651406 65651500 -85132053 - AluJ/FLAM SINE Alu -214 98 5 2416 83 3 0 chr11 65651515 65651817 -85131736 - AluSp SINE Alu -10 303 1 1388 177 113 8 chr11 65651939 65652204 -85131349 + AluJo SINE Alu 1 293 -19 1173 141 6 0 chr11 65652226 65652430 -85131123 + AluSg/x SINE Alu 112 316 0 2565 57 0 0 chr11 65652828 65653127 -85130426 + AluY SINE Alu 1 299 -12 2176 130 0 0 chr11 65653888 65654181 -85129372 - AluSc SINE Alu -15 294 2 932 113 0 0 chr11 65654214 65654338 -85129215 - FLAM_C SINE Alu -9 124 1 2148 133 0 0 chr11 65654395 65654695 -85128858 - AluSx SINE Alu -12 300 1 228 246 33 33 chr11 65654715 65654776 -85128777 + L2 LINE L2 3194 3254 -18 199 244 101 84 chr11 65656197 65656316 -85127237 + MIR SINE MIR 16 136 -72 22 0 0 0 chr11 65656916 65656938 -85126615 + AT_rich Low_complexity Low_complexity 1 22 0 421 215 40 178 chr11 65657521 65657597 -85125956 + L1MC3 LINE L1 4763 4848 -1298 2427 85 16 0 chr11 65657597 65657902 -85125651 - AluSp SINE Alu -3 310 1 421 215 40 178 chr11 65657902 65658049 -85125504 + L1MC3 LINE L1 4848 5014 -1132 2131 135 0 13 chr11 65658049 65658352 -85125201 - AluSx SINE Alu -13 299 1 421 215 40 178 chr11 65658352 65658421 -85125132 + L1MC3 LINE L1 5014 5010 -1136 2115 134 7 0 chr11 65658421 65658713 -85124840 - AluSx SINE Alu -18 294 1 421 215 40 178 chr11 65658713 65658744 -85124809 + L1MC3 LINE L1 5009 5043 -1103 947 131 0 0 chr11 65658745 65658882 -85124671 + AluJo SINE Alu 5 141 -171 27 0 0 26 chr11 65658936 65658957 -85124596 + AT_rich Low_complexity Low_complexity 1 22 -15 1368 88 2 282 chr11 65658957 65659354 -85124199 + AluSg SINE Alu 1 286 -14 27 0 0 26 chr11 65659354 65659370 -85124183 + AT_rich Low_complexity Low_complexity 22 37 0 873 226 51 32 chr11 65659370 65659725 -85123828 + L1MC3 LINE L1 5061 7694 -91 714 98 0 0 chr11 65659725 65659817 -85123736 + AluY SINE Alu 2 93 -218 1044 243 54 0 chr11 65659838 65660134 -85123419 + L1ME3A LINE L1 5526 5837 -333 768 50 10 10 chr11 65660175 65660275 -85123278 + AluY SINE Alu 1 100 -211 407 76 30 0 chr11 65660276 65660342 -85123211 + Alu SINE Alu 235 302 0 1998 104 0 21 chr11 65660592 65660881 -85122672 - AluSg SINE Alu -27 283 1 603 51 0 0 chr11 65661001 65661080 -85122473 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 266 261 98 11 chr11 65661135 65661227 -85122326 + L2 LINE L2 3214 3313 0 2406 54 27 7 chr11 65662383 65662677 -85120876 + AluY SINE Alu 1 300 -11 2362 50 7 0 chr11 65662777 65663054 -85120499 - AluY SINE Alu -24 287 9 387 255 34 54 chr11 65663259 65663408 -85120145 - MIR SINE MIR -69 193 48 1883 95 102 42 chr11 65663460 65663572 -85119981 + AluSq SINE Alu 3 107 -206 2229 112 7 0 chr11 65663572 65663867 -85119686 + AluSq SINE Alu 6 302 -11 1883 95 102 42 chr11 65663867 65664038 -85119515 + AluSq SINE Alu 107 303 -10 662 150 8 33 chr11 65664059 65664179 -85119374 + FLAM_C SINE Alu 11 127 -16 406 320 16 8 chr11 65664480 65664605 -85118948 - MIR3 SINE MIR -15 193 68 2002 124 7 3 chr11 65664795 65665077 -85118476 + AluSg SINE Alu 8 290 -20 2223 126 3 0 chr11 65665129 65665439 -85118114 + AluSx SINE Alu 2 312 0 212 356 0 0 chr11 65668419 65668464 -85115089 + C-rich Low_complexity Low_complexity 1 45 0 255 228 0 13 chr11 65668618 65668697 -85114856 + L1M4 LINE L1 3876 3953 -2193 2472 57 0 7 chr11 65668708 65669006 -85114547 + AluY SINE Alu 1 296 -15 2414 77 0 3 chr11 65669025 65669322 -85114231 + AluY SINE Alu 1 296 -15 340 143 18 0 chr11 65669647 65669703 -85113850 - Tigger5 DNA MER2_type 0 2323 2267 180 0 0 0 chr11 65669817 65669837 -85113716 + (A)n Simple_repeat Simple_repeat 1 20 0 553 117 53 0 chr11 65669842 65669936 -85113617 - FLAM_C SINE Alu 0 143 45 1643 111 5 0 chr11 65669936 65670152 -85113401 + AluSq SINE Alu 29 245 -68 1970 96 0 0 chr11 65670152 65670392 -85113161 + AluSq SINE Alu 53 292 -21 406 169 0 0 chr11 65670392 65670457 -85113096 + AluS SINE Alu 232 296 -14 2168 109 0 23 chr11 65670519 65670821 -85112732 + AluSx SINE Alu 1 295 -17 33 0 0 0 chr11 65670928 65670961 -85112592 + GC_rich Low_complexity Low_complexity 1 33 0 244 289 7 26 chr11 65671042 65671194 -85112359 + (CCG)n Simple_repeat Simple_repeat 2 150 0 180 0 0 0 chr11 65671972 65671992 -85111561 + (T)n Simple_repeat Simple_repeat 1 20 0 422 224 51 10 chr11 65673212 65673310 -85110243 - MER5A DNA MER1_type -26 163 62 994 126 0 40 chr11 65673310 65673514 -85110039 - AluSg/x SINE Alu 0 331 133 2447 95 0 0 chr11 65673514 65673819 -85109734 - AluSq SINE Alu -8 305 1 994 126 0 40 chr11 65673819 65673839 -85109714 - AluSg/x SINE Alu -198 133 114 2283 95 10 3 chr11 65674012 65674318 -85109235 - AluSq SINE Alu -5 308 1 231 247 299 0 chr11 65674329 65674426 -85109127 - MIR SINE MIR -13 249 124 * 283 248 44 53 chr11 65674380 65674493 -85109060 + L2 LINE L2 2672 2783 -531 2286 102 3 0 chr11 65674521 65674816 -85108737 - AluSp SINE Alu -17 296 1 2352 110 0 0 chr11 65674820 65675128 -85108425 - AluSx SINE Alu 0 312 5 226 385 162 0 chr11 65675131 65675279 -85108274 + L2 LINE L2 2878 3049 -264 1354 172 90 16 chr11 65675286 65675542 -85108011 + AluJb SINE Alu 6 280 -32 2241 69 6 47 chr11 65675618 65675938 -85107615 - AluY SINE Alu -4 307 1 2357 77 3 13 chr11 65675973 65676272 -85107281 + AluSp SINE Alu 3 298 -15 2408 76 0 3 chr11 65676284 65676585 -85106968 + AluY SINE Alu 1 300 -11 212 94 0 0 chr11 65676633 65676665 -85106888 + L3 LINE CR1 1472 1503 -74 542 358 62 4 chr11 65676899 65677139 -85106414 + MIR SINE MIR 9 262 0 540 135 0 0 chr11 65677254 65677328 -85106225 - AluSg/x SINE Alu -18 291 218 22 0 0 0 chr11 65677332 65677354 -85106199 + AT_rich Low_complexity Low_complexity 1 22 0 2259 110 0 3 chr11 65677356 65677655 -85105898 + AluSg SINE Alu 1 298 -12 2298 104 3 0 chr11 65677661 65677958 -85105595 + AluSx SINE Alu 1 298 -14 216 254 17 0 chr11 65678350 65678403 -85105150 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 1696 128 64 15 chr11 65678403 65678669 -85104884 - AluSx SINE Alu -31 281 3 364 229 67 19 chr11 65678778 65678883 -85104670 + L2 LINE L2 3142 3251 -62 821 276 49 88 chr11 65679016 65679242 -85104311 + L2 LINE L2 2846 3079 -234 1803 146 31 7 chr11 65679242 65679529 -85104024 - AluJb SINE Alu -14 298 5 821 276 49 88 chr11 65679529 65679608 -85103945 + L2 LINE L2 3079 3160 -153 1913 148 0 23 chr11 65679608 65679912 -85103641 - AluJo SINE Alu -10 302 6 821 276 49 88 chr11 65679912 65680091 -85103462 + L2 LINE L2 3160 3312 -1 990 208 15 10 chr11 65680660 65680857 -85102696 + MIR SINE MIR 12 209 -53 2180 99 0 7 chr11 65682049 65682331 -85101222 + AluSc SINE Alu 13 292 -17 2305 100 7 0 chr11 65682340 65682640 -85100913 + AluSp SINE Alu 1 302 -11 2067 92 4 14 chr11 65682686 65682967 -85100586 + AluSc SINE Alu 15 292 -17 956 106 0 0 chr11 65682998 65683121 -85100432 + AluSq/x SINE Alu 1 123 -190 779 128 40 0 chr11 65683121 65683246 -85100307 + AluSc SINE Alu 168 297 -12 2141 93 30 17 chr11 65683338 65683639 -85099914 + AluSq SINE Alu 1 305 -8 1881 150 10 16 chr11 65684072 65684348 -85099205 + AluSq SINE Alu 6 281 -32 216 0 0 0 chr11 65684348 65684372 -85099181 + (CAAT)n Simple_repeat Simple_repeat 4 27 0 1881 150 10 16 chr11 65684372 65684401 -85099152 + AluSq SINE Alu 281 309 -4 2592 54 0 0 chr11 65684609 65684905 -85098648 + AluY SINE Alu 1 296 -15 804 218 36 0 chr11 65684905 65685070 -85098483 + AluSg/x SINE Alu 126 296 -16 1804 128 3 39 chr11 65685091 65685396 -85098157 - AluSx SINE Alu -18 294 1 1172 125 0 0 chr11 65685420 65685596 -85097957 - L1PA10 LINE L1 0 6168 5993 288 0 0 0 chr11 65685868 65685900 -85097653 + (A)n Simple_repeat Simple_repeat 1 32 0 1759 68 0 27 chr11 65685900 65686121 -85097432 + AluY SINE Alu 80 294 -17 942 114 0 0 chr11 65686152 65686275 -85097278 + AluSq/x SINE Alu 1 123 -190 771 129 40 0 chr11 65686275 65686399 -85097154 + AluSc SINE Alu 168 296 -13 2141 93 30 17 chr11 65686491 65686792 -85096761 + AluSq SINE Alu 1 305 -8 1851 154 10 16 chr11 65687225 65687501 -85096052 + AluSq SINE Alu 6 281 -32 216 0 0 0 chr11 65687501 65687525 -85096028 + (CAAT)n Simple_repeat Simple_repeat 4 27 0 1851 154 10 16 chr11 65687525 65687554 -85095999 + AluSq SINE Alu 281 309 -4 2523 71 0 0 chr11 65687762 65688070 -85095483 + AluY SINE Alu 1 308 -3 599 255 76 0 chr11 65688080 65688237 -85095316 + AluJb SINE Alu 137 305 -7 24 0 0 0 chr11 65688237 65688261 -85095292 + AT_rich Low_complexity Low_complexity 1 24 0 724 145 15 38 chr11 65688262 65688393 -85095160 + FLAM_C SINE Alu 2 129 -14 290 162 14 0 chr11 65688393 65688467 -85095086 + (TA)n Simple_repeat Simple_repeat 1 75 0 447 87 174 0 chr11 65688478 65688547 -85095006 - AluSq SINE Alu -116 197 117 2448 106 0 0 chr11 65688547 65688858 -85094695 - AluSp SINE Alu -2 311 1 2227 110 0 0 chr11 65689465 65689765 -85093788 - AluSx SINE Alu -11 301 2 2178 93 0 0 chr11 65689877 65690157 -85093396 - AluSx SINE Alu -32 280 1 230 244 51 13 chr11 65691879 65691957 -85091596 + L1M3e LINE L1 671 751 -6279 2183 91 0 31 chr11 65692752 65693071 -85090482 - AluY SINE Alu -2 309 1 1483 103 28 113 chr11 65693074 65693393 -85090160 - AluY SINE Alu -19 292 1 1475 118 0 0 chr11 65693393 65693596 -85089957 - AluSx SINE Alu -109 203 1 231 36 0 0 chr11 65693807 65693835 -85089718 + (T)n Simple_repeat Simple_repeat 1 28 0 1967 135 10 6 chr11 65694000 65694311 -85089242 - AluJb SINE Alu 0 312 1 2057 108 0 29 chr11 65695238 65695545 -85088008 + AluSg SINE Alu 5 302 -8 256 241 126 35 chr11 65695805 65695872 -85087681 + MER58 DNA MER1_type 1 79 -136 2400 68 3 0 chr11 65695872 65696179 -85087374 - AluY SINE Alu -3 308 1 256 241 126 35 chr11 65696179 65696198 -85087355 + MER58 DNA MER1_type 79 95 -120 1898 118 16 32 chr11 65696210 65696524 -85087029 + AluSx SINE Alu 3 311 -1 480 181 0 48 chr11 65696528 65696633 -85086920 - FLAM_A SINE Alu -32 110 11 376 202 19 39 chr11 65696671 65696775 -85086778 + MER58 DNA MER1_type 2318 2419 -1 1232 171 46 95 chr11 65698106 65698410 -85085143 + AluJo SINE Alu 2 290 -12 223 239 0 0 chr11 65699154 65699200 -85084353 + GA-rich Low_complexity Low_complexity 2 47 0 2332 76 0 7 chr11 65700987 65701289 -85082264 + AluY SINE Alu 1 300 -11 300 276 152 48 chr11 65702430 65702441 -85081112 - MIR SINE MIR -10 252 244 2095 122 0 3 chr11 65702441 65702737 -85080816 + AluSx SINE Alu 1 295 -17 300 276 152 48 chr11 65702737 65702935 -85080618 - MIR SINE MIR -18 244 21 2241 109 3 0 chr11 65703030 65703333 -85080220 - AluSp SINE Alu -9 304 1 2109 110 0 0 chr11 65703940 65704240 -85079313 - AluSx SINE Alu -11 301 2 2073 93 0 0 chr11 65704352 65704632 -85078921 - AluSx SINE Alu -32 280 1 230 244 51 13 chr11 65706343 65706421 -85077132 + L1M3e LINE L1 671 751 -6279 2226 85 0 31 chr11 65707215 65707534 -85076019 - AluY SINE Alu -2 309 1 1507 100 28 113 chr11 65707537 65707856 -85075697 - AluY SINE Alu -19 292 1 1475 118 0 0 chr11 65707856 65708059 -85075494 - AluSx SINE Alu -109 203 1 2421 50 7 0 chr11 65708271 65708570 -85074983 - AluY SINE Alu -2 309 9 347 283 42 48 chr11 65708758 65708924 -85074629 - MIR SINE MIR -50 212 48 1752 97 101 56 chr11 65708976 65709093 -85074460 + AluSq SINE Alu 3 113 -200 2106 103 7 0 chr11 65709093 65709383 -85074170 + AluSq SINE Alu 11 302 -11 1752 97 101 56 chr11 65709383 65709553 -85074000 + AluSq SINE Alu 113 303 -10 668 173 8 24 chr11 65709574 65709701 -85073852 + FLAM_C SINE Alu 11 135 -8 392 320 16 8 chr11 65709995 65710120 -85073433 - MIR3 SINE MIR -15 193 68 2322 67 0 7 chr11 65710305 65710605 -85072948 + AluSg SINE Alu 2 299 -11 1504 162 96 0 chr11 65711364 65711636 -85071917 - AluJb SINE Alu -14 298 1 1935 70 20 66 chr11 65711699 65712001 -85071552 - AluSp SINE Alu -25 288 1 358 87 0 58 chr11 65712018 65712087 -85071466 - Alu SINE Alu 0 301 237 1735 157 0 31 chr11 65712326 65712644 -85070909 + AluSg SINE Alu 1 308 -2 2218 95 0 0 chr11 65712650 65712946 -85070607 + AluSg SINE Alu 1 296 -14 1304 109 0 0 chr11 65713074 65713267 -85070286 + AluY SINE Alu 119 311 0 1013 182 33 0 chr11 65713269 65713450 -85070103 + AluJo SINE Alu 109 295 -17 192 77 0 0 chr11 65713760 65713786 -85069767 + (T)n Simple_repeat Simple_repeat 1 26 0 302 194 30 15 chr11 65713886 65713953 -85069600 + MIR3 SINE MIR 117 184 -24 210 71 0 0 chr11 65715615 65715643 -85067910 + (CGGGG)n Simple_repeat Simple_repeat 5 32 0 265 296 14 0 chr11 65719895 65719966 -85063587 - MIR3 SINE MIR -13 195 124 22 0 0 0 chr11 65720275 65720297 -85063256 + AT_rich Low_complexity Low_complexity 1 22 0 2236 61 7 0 chr11 65720347 65720651 -85062902 + AluSq SINE Alu 1 306 0 1954 113 14 3 chr11 65721060 65721353 -85062200 + AluSx SINE Alu 1 296 -16 724 244 67 13 chr11 65721363 65721601 -85061952 - L1MC4 LINE L1 -967 7075 6825 1661 139 29 23 chr11 65721668 65721843 -85061710 - AluSx SINE Alu 0 312 140 285 29 0 0 chr11 65721843 65721877 -85061676 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2004 91 0 21 chr11 65721877 65722164 -85061389 - AluSg SINE Alu -29 281 1 2021 105 14 10 chr11 65722164 65722458 -85061095 - AluSg SINE Alu -15 295 1 1661 139 29 23 chr11 65722458 65722590 -85060963 - AluSx SINE Alu -171 141 1 2020 138 0 7 chr11 65722637 65722935 -85060618 + AluSq SINE Alu 1 296 -17 1887 140 0 13 chr11 65722951 65723251 -85060302 + AluSc SINE Alu 3 298 -11 201 94 0 0 chr11 65723299 65723331 -85060222 + L3 LINE CR1 1472 1503 -74 507 358 62 4 chr11 65723565 65723805 -85059748 + MIR SINE MIR 9 262 0 789 241 66 96 chr11 65723920 65724022 -85059531 - AluJo SINE Alu -8 294 191 2129 110 0 3 chr11 65724022 65724321 -85059232 + AluSg SINE Alu 1 298 -12 2136 103 3 0 chr11 65724327 65724619 -85058934 + AluSx SINE Alu 1 293 -19 789 241 66 96 chr11 65724619 65724630 -85058923 - AluJo SINE Alu -116 186 176 1800 132 71 0 chr11 65724630 65724911 -85058642 + AluSx SINE Alu 3 303 -9 789 241 66 96 chr11 65724911 65725092 -85058461 - AluJo SINE Alu -126 176 1 2225 88 10 0 chr11 65725208 65725504 -85058049 - AluSp SINE Alu -14 299 1 383 215 38 0 chr11 65725516 65725595 -85057958 + L2 LINE L2 3229 3310 -3 200 226 0 12 chr11 65726173 65726257 -85057296 + (TA)n Simple_repeat Simple_repeat 1 83 0 2054 107 17 0 chr11 65726266 65726556 -85056997 + AluSx SINE Alu 1 295 -17 2102 92 0 7 chr11 65726605 65726913 -85056640 + AluY SINE Alu 1 306 0 1965 121 0 7 chr11 65727442 65727768 -85055785 + AluSg SINE Alu 3 326 0 1082 155 0 0 chr11 65728500 65728674 -85054879 + AluSx SINE Alu 1 174 -138 1662 157 10 45 chr11 65728701 65728839 -85054714 + AluSq SINE Alu 1 142 -171 2462 51 0 0 chr11 65728839 65729135 -85054418 + AluY SINE Alu 1 296 -15 1662 157 10 45 chr11 65729135 65729308 -85054245 + AluSq SINE Alu 142 301 -12 263 279 32 71 chr11 65730733 65730887 -85052666 + L2 LINE L2 2936 3083 -189 1216 111 6 0 chr11 65730981 65731153 -85052400 - AluSq SINE Alu -7 306 134 1997 141 0 6 chr11 65731153 65731465 -85052088 - AluSg SINE Alu 0 310 1 2032 125 27 0 chr11 65731466 65731762 -85051791 - AluSx SINE Alu -7 305 2 252 331 50 20 chr11 65732026 65732229 -85051324 + MIR SINE MIR 1 212 -50 181 191 0 0 chr11 65732690 65732732 -85050821 - MIR SINE MIR -72 136 95 374 285 43 37 chr11 65732741 65732931 -85050622 + MIR SINE MIR 6 191 -67 1922 109 68 3 chr11 65732932 65733243 -85050310 + THE1C LTR MaLR 1 331 -44 2223 117 0 0 chr11 65733243 65733550 -85050003 - AluSx SINE Alu -5 307 1 1232 218 77 45 chr11 65733649 65734025 -85049528 + LTR65 LTR ERV1 185 572 -97 256 377 84 0 chr11 65734276 65734430 -85049123 - MIR SINE MIR -75 187 21 1665 27 0 0 chr11 65734862 65735048 -85048505 + U2 snRNA snRNA 1 186 -2 1240 102 5 60 chr11 65735250 65735330 -85048223 - AluY SINE Alu -108 203 120 2209 92 0 3 chr11 65735330 65735635 -85047918 - AluSc SINE Alu -5 304 1 1240 102 5 60 chr11 65735635 65735769 -85047784 - AluY SINE Alu -191 120 1 249 172 76 55 chr11 65735798 65735996 -85047557 + AluSq SINE Alu 2 295 -6 2356 43 13 13 chr11 65736166 65736469 -85047084 - AluY SINE Alu -3 308 6 1056 65 14 0 chr11 65736527 65736666 -85046887 + AluSq SINE Alu 158 298 -15 236 308 0 0 chr11 65737701 65737766 -85045787 - L2 LINE L2 -1 3271 3207 327 312 16 24 chr11 65738587 65738712 -85044841 - L2 LINE L2 0 3272 3149 344 283 138 31 chr11 65738937 65739096 -85044457 + MER5A DNA MER1_type 14 189 0 217 273 61 0 chr11 65739536 65739602 -85043951 + MIR SINE MIR 40 109 -99 1101 119 18 0 chr11 65739602 65739770 -85043783 - AluSg/x SINE Alu -7 303 133 2400 54 0 0 chr11 65739770 65740066 -85043487 - AluY SINE Alu -15 296 1 269 325 16 32 chr11 65740335 65740461 -85043092 - L2 LINE L2 0 3272 3149 315 304 139 25 chr11 65740699 65740857 -85042696 + MER5A DNA MER1_type 14 189 0 219 292 56 0 chr11 65741297 65741369 -85042184 + MIR SINE MIR 40 115 -93 767 167 0 0 chr11 65741473 65741587 -85041966 - FLAM_C SINE Alu -28 115 2 2270 94 3 0 chr11 65741650 65741938 -85041615 + AluY SINE Alu 1 289 -22 2499 81 3 0 chr11 65741943 65742250 -85041303 + AluSc SINE Alu 1 308 -1 625 165 25 8 chr11 65742649 65742770 -85040783 + FLAM_C SINE Alu 2 124 -19 1999 138 0 7 chr11 65742788 65743078 -85040475 + AluSg SINE Alu 1 288 -22 1904 165 3 16 chr11 65743122 65743431 -85040122 + AluJo SINE Alu 1 305 -7 2414 84 3 0 chr11 65743470 65743766 -85039787 - AluSg SINE Alu -13 297 1 431 179 13 0 chr11 65744098 65744176 -85039377 + Tigger5 DNA MER2_type 1 79 -2244 2678 58 0 0 chr11 65744387 65744695 -85038858 - AluY SINE Alu -3 308 1 185 304 76 63 chr11 65745827 65745985 -85037568 + L2 LINE L2 2903 3062 -210 946 102 0 0 chr11 65746079 65746207 -85037346 + AluSg/x SINE Alu 183 310 -2 411 187 0 0 chr11 65746380 65746455 -85037098 + 7SLRNA srpRNA srpRNA 6 80 -240 1228 144 0 0 chr11 65746780 65746954 -85036599 + AluJb SINE Alu 120 293 -19 1304 128 10 44 chr11 65746955 65747089 -85036464 + AluSp SINE Alu 1 127 -186 1810 107 0 52 chr11 65747089 65747417 -85036136 + AluSp SINE Alu 1 311 -2 1304 128 10 44 chr11 65747417 65747486 -85036067 + AluSp SINE Alu 127 197 -116 290 162 14 0 chr11 65747497 65747571 -85035982 + (TA)n Simple_repeat Simple_repeat 1 75 0 673 145 15 38 chr11 65747571 65747702 -85035851 - FLAM_C SINE Alu -14 129 2 34 19 0 19 chr11 65747703 65747727 -85035826 + AT_rich Low_complexity Low_complexity 1 24 -27 1503 172 40 30 chr11 65747727 65747894 -85035659 - AluSx SINE Alu -7 305 132 2476 78 0 0 chr11 65747894 65748202 -85035351 - AluY SINE Alu -3 308 1 1503 172 40 30 chr11 65748202 65748336 -85035217 - AluSx SINE Alu -180 132 1 34 19 0 19 chr11 65748336 65748363 -85035190 + AT_rich Low_complexity Low_complexity 24 51 0 246 98 33 33 chr11 65748369 65748430 -85035123 - Charlie1 DNA MER1_type -207 2554 2494 857 201 25 15 chr11 65748452 65748656 -85034897 - MER21A LTR ERV1 -29 902 697 485 194 11 43 chr11 65748671 65748857 -85034696 + CT-rich Low_complexity Low_complexity 1 180 0 198 71 0 0 chr11 65748874 65748902 -85034651 + (TCCC)n Simple_repeat Simple_repeat 4 31 0 27 0 0 0 chr11 65748902 65748929 -85034624 + AT_rich Low_complexity Low_complexity 1 27 0 3159 184 65 7 chr11 65748943 65749548 -85034005 - MER21B LTR ERV1 -223 640 1 593 202 34 0 chr11 65749548 65749667 -85033886 - Charlie1 DNA MER1_type -290 2471 2349 852 211 6 6 chr11 65749858 65750019 -85033534 + AluJo SINE Alu 3 163 -149 263 88 0 105 chr11 65750049 65750098 -85033455 + Alu SINE Alu 252 296 -6 1857 121 0 55 chr11 65750098 65750428 -85033125 + AluSx SINE Alu 1 312 0 831 219 52 21 chr11 65750531 65750795 -85032758 - LTR24 LTR ERV1 0 467 233 2101 105 20 23 chr11 65750795 65751101 -85032452 - AluSq SINE Alu -8 305 1 886 297 24 36 chr11 65751101 65751469 -85032084 + HERVL LTR ERVL 1757 2129 -2867 1014 81 0 0 chr11 65751479 65751602 -85031951 + AluSg/x SINE Alu 174 296 -14 2668 55 0 0 chr11 65751607 65751917 -85031636 + AluY SINE Alu 1 310 -1 596 233 103 0 chr11 65751920 65752066 -85031487 + AluJo/FRAM SINE Alu 137 297 -5 814 256 70 0 chr11 65752080 65752295 -85031258 + HERVL LTR ERVL 2128 2357 -2639 * 895 290 100 13 chr11 65752293 65752817 -85030736 + HERVL LTR ERVL 3003 3298 -1698 1494 187 72 7 chr11 65752871 65753149 -85030404 + AluJo SINE Alu 1 296 -16 2184 118 3 0 chr11 65753153 65753442 -85030111 + AluSx SINE Alu 1 290 -22 688 147 8 47 chr11 65753872 65754001 -85029552 - FLAM_C SINE Alu -5 128 5 2329 84 6 53 chr11 65754016 65754339 -85029214 - AluSx SINE Alu -4 308 1 286 314 13 58 chr11 65754371 65754441 -85029112 - L2 LINE L2 -534 2780 2708 2131 111 21 0 chr11 65754441 65754730 -85028823 - AluSp SINE Alu -18 295 1 286 314 13 58 chr11 65754730 65754815 -85028738 - L2 LINE L2 -606 2708 2632 964 176 66 11 chr11 65754839 65755021 -85028532 + AluJo SINE Alu 37 228 -84 1386 156 103 4 chr11 65755038 65755281 -85028272 - AluJo SINE Alu -20 292 26 3680 166 16 7 chr11 65755281 65755896 -85027657 + LTR5 LTR ERVK 1 621 -348 226 88 0 0 chr11 65755896 65755930 -85027623 - AluY SINE Alu -8 293 260 1649 70 0 23 chr11 65755930 65756144 -85027409 - AluY SINE Alu -102 209 1 1393 157 39 99 chr11 65756144 65756526 -85027027 + LTR5 LTR ERVK 611 969 0 1965 110 19 57 chr11 65756654 65756887 -85026666 - AluSq SINE Alu -8 305 86 8515 48 10 0 chr11 65756887 65757846 -85025707 + LTR5 LTR ERVK 1 969 0 1965 110 19 57 chr11 65757846 65757929 -85025624 - AluSq SINE Alu -227 86 1 377 268 92 0 chr11 65757929 65758071 -85025482 + Charlie8 DNA MER1_type 66 220 -2197 1920 90 54 7 chr11 65758704 65758983 -85024570 + AluY SINE Alu 1 292 -19 199 283 189 9 chr11 65759048 65759154 -85024399 + MIR SINE MIR 81 205 -57 354 80 0 0 chr11 65759166 65759216 -85024337 + Alu SINE Alu 242 291 -10 596 127 111 63 chr11 65759683 65759809 -85023744 + FLAM_C SINE Alu 2 133 0 2097 67 0 4 chr11 65761570 65761825 -85021728 - AluY SINE Alu -57 254 1 2428 84 3 0 chr11 65761829 65762126 -85021427 - AluSx SINE Alu -13 299 2 182 196 65 22 chr11 65762137 65762183 -85021370 + MIR SINE MIR 123 170 -92 191 259 74 37 chr11 65764123 65764204 -85019349 - L2 LINE L2 -8 3305 3222 2269 110 3 0 chr11 65764413 65764712 -85018841 + AluSq SINE Alu 1 300 -13 2382 85 0 7 chr11 65764756 65765062 -85018491 + AluSg SINE Alu 1 304 -6 677 169 39 15 chr11 65765110 65765240 -85018313 + FLAM_C SINE Alu 1 133 0 310 291 50 72 chr11 65765270 65765631 -85017922 + L1M4 LINE L1 3602 3954 -2192 2358 63 0 7 chr11 65765642 65765928 -85017625 + AluY SINE Alu 1 284 -27 2375 48 42 7 chr11 65766085 65766374 -85017179 + AluY SINE Alu 1 299 -12 330 243 36 0 chr11 65767764 65767875 -85015678 - L1M4 LINE L1 -2146 4000 3886 2220 102 0 13 chr11 65767901 65768214 -85015339 + AluY SINE Alu 2 310 -1 955 169 13 0 chr11 65768214 65768368 -85015185 + AluJo/FRAM SINE Alu 146 301 -11 284 213 226 85 chr11 65768831 65768995 -85014558 - MIR SINE MIR -66 196 10 2323 98 0 0 chr11 65769380 65769667 -85013886 + AluSc SINE Alu 1 287 -22 434 312 103 21 chr11 65769668 65769902 -85013651 - MIR SINE MIR -2 260 8 1004 120 0 0 chr11 65770834 65770967 -85012586 + FLAM_C SINE Alu 1 133 -10 2156 126 3 3 chr11 65770971 65771280 -85012273 + AluSg SINE Alu 1 309 -1 1949 156 3 22 chr11 65771602 65771916 -85011637 + AluJb SINE Alu 1 308 -4 1981 128 20 17 chr11 65772030 65772327 -85011226 + AluSx SINE Alu 1 298 -14 2375 101 3 22 chr11 65772328 65772646 -85010907 + AluSx SINE Alu 1 312 0 299 279 16 50 chr11 65773233 65773425 -85010128 + GA-rich Low_complexity Low_complexity 1 185 0 1159 155 28 0 chr11 65774782 65774963 -85008590 - AluJo SINE Alu -7 305 120 712 164 86 8 chr11 65774975 65775103 -85008450 - AluJo/FRAM SINE Alu -23 289 152 416 238 0 0 chr11 65775102 65775182 -85008371 - AluJ/FLAM SINE Alu -231 81 2 * 1932 161 3 3 chr11 65776628 65776920 -85006633 - AluJo SINE Alu -20 292 1 208 238 60 24 chr11 65777286 65777370 -85006183 + L2 LINE L2 1844 1930 -1384 364 270 103 70 chr11 65777373 65777439 -85006114 + L2 LINE L2 2719 2781 -491 2677 49 0 0 chr11 65777439 65777746 -85005807 + AluY SINE Alu 1 307 -4 364 270 103 70 chr11 65777746 65778025 -85005528 + L2 LINE L2 2781 3060 -212 2167 117 3 3 chr11 65778067 65778365 -85005188 + AluSp SINE Alu 1 298 -15 1887 138 25 0 chr11 65778371 65778654 -85004899 + AluSp SINE Alu 1 290 -23 633 277 178 16 chr11 65778799 65779113 -85004440 - L2 LINE L2 -1614 1700 1336 252 277 27 80 chr11 65779318 65779430 -85004123 - MER5B DNA MER1_type -72 106 1 1125 116 12 17 chr11 65779536 65779709 -85003844 - AluSg/x SINE Alu -8 302 131 2263 71 64 3 chr11 65779719 65780002 -85003551 - AluSg SINE Alu -10 300 1 2226 73 3 36 chr11 65780114 65780415 -85003138 + AluY SINE Alu 3 293 -18 2512 66 3 7 chr11 65780456 65780760 -85002793 + AluSp SINE Alu 1 303 -10 335 304 171 45 chr11 65780885 65781047 -85002506 - L2 LINE L2 -2 3270 3130 716 110 55 16 chr11 65781047 65781174 -85002379 + FLAM_C SINE Alu 1 132 -1 335 304 171 45 chr11 65781174 65781409 -85002144 - L2 LINE L2 -142 3130 2823 204 340 118 37 chr11 65781439 65781819 -85001734 - L2 LINE L2 -912 2402 1992 261 290 121 8 chr11 65782117 65782241 -85001312 + MER5A DNA MER1_type 52 189 0 404 240 98 90 chr11 65782277 65782357 -85001196 - L1MC4 LINE L1 -9 8033 7955 1832 164 3 16 chr11 65782357 65782661 -85000892 - AluJo SINE Alu 0 312 13 404 240 98 90 chr11 65782661 65782698 -85000855 - L1MC4 LINE L1 -87 7955 7920 2286 125 0 6 chr11 65782698 65783010 -85000543 - AluSg SINE Alu 0 310 1 404 240 98 90 chr11 65783010 65783128 -85000425 - L1MC4 LINE L1 -122 7920 7805 2552 70 0 0 chr11 65783128 65783430 -85000123 - AluY SINE Alu -9 302 1 404 240 98 90 chr11 65783430 65783514 -85000039 - L1MC4 LINE L1 -237 7805 7706 2565 70 0 0 chr11 65783514 65783816 -84999737 - AluY SINE Alu -9 302 1 404 240 98 90 chr11 65783816 65783839 -84999714 - L1MC4 LINE L1 -336 7706 7685 1491 92 13 38 chr11 65786751 65786990 -84996563 - AluSg SINE Alu -77 233 1 270 0 0 0 chr11 65786996 65787026 -84996527 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1994 143 0 13 chr11 65787138 65787446 -84996107 - AluSx SINE Alu -8 304 1 1537 158 86 11 chr11 65787606 65787884 -84995669 - AluSc SINE Alu -10 299 1 374 98 0 0 chr11 65787884 65787935 -84995618 - AluSg/x SINE Alu -167 133 83 187 250 60 24 chr11 65788157 65788241 -84995312 + L2 LINE L2 1844 1930 -1384 364 270 103 70 chr11 65788244 65788310 -84995243 + L2 LINE L2 2719 2781 -491 2662 52 0 0 chr11 65788310 65788617 -84994936 + AluY SINE Alu 1 307 -4 364 270 103 70 chr11 65788617 65788896 -84994657 + L2 LINE L2 2781 3060 -212 2151 120 3 3 chr11 65788938 65789237 -84994316 + AluSp SINE Alu 1 299 -14 2178 102 30 13 chr11 65789242 65789546 -84994007 + AluSg SINE Alu 1 309 -1 211 211 0 0 chr11 65789568 65789606 -84993947 + GA-rich Low_complexity Low_complexity 4 41 0 2622 47 0 0 chr11 65789711 65790011 -84993542 + AluY SINE Alu 12 311 0 328 211 116 32 chr11 65790084 65790179 -84993374 - L1MC5 LINE L1 -30 7931 7829 2382 84 3 0 chr11 65790197 65790494 -84993059 - AluSp SINE Alu -15 298 1 2155 123 3 3 chr11 65790504 65790804 -84992749 - AluSx SINE Alu -12 300 1 388 254 118 0 chr11 65790804 65790914 -84992639 - MIR SINE MIR -112 150 28 389 370 87 5 chr11 65790958 65791166 -84992387 - MIR SINE MIR -32 230 6 282 191 276 0 chr11 65791194 65791299 -84992254 - MIR3 SINE MIR -21 187 54 591 156 0 0 chr11 65791391 65791487 -84992066 + AluJ/FLAM SINE Alu 5 100 -212 24 32 0 0 chr11 65791491 65791522 -84992031 + AT_rich Low_complexity Low_complexity 1 31 0 1941 128 7 4 chr11 65791547 65791827 -84991726 + AluSx SINE Alu 1 281 -31 184 42 0 0 chr11 65791827 65791851 -84991702 + (CAA)n Simple_repeat Simple_repeat 1 180 0 245 163 0 82 chr11 65791854 65791903 -84991650 + L2 LINE L2 3238 3282 -31 1202 133 6 0 chr11 65791903 65792076 -84991477 - AluSg/x SINE Alu -5 305 132 2141 118 3 3 chr11 65792076 65792373 -84991180 - AluSg SINE Alu -13 297 1 641 226 98 55 chr11 65792453 65792688 -84990865 - MIR SINE MIR 0 262 18 309 336 10 0 chr11 65792884 65792988 -84990565 + CT-rich Low_complexity Low_complexity 1 105 0 1657 90 163 0 chr11 65793009 65793254 -84990299 + AluSx SINE Alu 5 289 -23 1817 170 3 0 chr11 65793256 65793565 -84989988 + AluSx SINE Alu 3 312 0 1109 188 0 88 chr11 65793578 65793850 -84989703 + AluJo SINE Alu 2 249 -63 207 69 0 0 chr11 65793862 65793891 -84989662 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2788 3 0 3 chr11 65793933 65794231 -84989322 + AluYb8 SINE Alu 1 297 -21 2337 97 0 3 chr11 65796566 65796865 -84986688 - AluSg SINE Alu -12 298 1 270 0 0 0 chr11 65796871 65796901 -84986652 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1370 207 3 19 chr11 65797013 65797322 -84986231 - AluSx SINE Alu -8 304 1 24 32 0 0 chr11 65797347 65797378 -84986175 + AT_rich Low_complexity Low_complexity 1 31 0 632 156 0 0 chr11 65797382 65797478 -84986075 - AluJ/FLAM SINE Alu -212 100 5 314 191 276 0 chr11 65797570 65797675 -84985878 + MIR3 SINE MIR 54 187 -21 416 351 96 14 chr11 65797703 65797911 -84985642 + MIR SINE MIR 6 230 -32 418 266 116 5 chr11 65797936 65798065 -84985488 + MIR SINE MIR 14 150 -62 2135 127 3 3 chr11 65798065 65798365 -84985188 + AluSx SINE Alu 1 300 -12 2373 84 3 0 chr11 65798375 65798672 -84984881 + AluSp SINE Alu 1 298 -15 335 211 116 32 chr11 65798690 65798785 -84984768 + L1MC5 LINE L1 7829 7931 -30 2474 53 40 0 chr11 65798858 65799157 -84984396 - AluY SINE Alu 0 311 1 1659 66 52 5 chr11 65799912 65800125 -84983428 + AluSx SINE Alu 1 223 -89 286 214 0 0 chr11 65800130 65800186 -84983367 + FAM SINE Alu 54 109 -66 498 224 0 0 chr11 65800237 65800322 -84983231 + AluSx SINE Alu 201 285 -24 253 214 33 46 chr11 65800357 65800432 -84983121 + MIR SINE MIR 51 113 -95 180 97 0 0 chr11 65800461 65800492 -84983061 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2150 116 0 7 chr11 65800494 65800795 -84982758 - AluSg SINE Alu -11 299 1 647 195 65 16 chr11 65800795 65800918 -84982635 - AluJo SINE Alu -167 145 17 408 294 208 26 chr11 65800930 65801161 -84982392 - L1MC4 LINE L1 -11 8031 7759 369 246 87 111 chr11 65801163 65801179 -84982374 - MIR SINE MIR -3 259 244 2218 82 7 0 chr11 65801179 65801488 -84982065 - AluSx SINE Alu 0 311 1 369 246 87 111 chr11 65801488 65801722 -84981831 - MIR SINE MIR -18 244 14 213 328 0 15 chr11 65801799 65801866 -84981687 + MIR SINE MIR 86 151 -57 212 236 18 0 chr11 65802247 65802302 -84981251 + (CGG)n Simple_repeat Simple_repeat 1 56 0 21 0 0 0 chr11 65802332 65802353 -84981200 + GC_rich Low_complexity Low_complexity 1 21 0 240 234 452 8 chr11 65803017 65803141 -84980412 + MIR SINE MIR 9 187 -75 2337 83 7 3 chr11 65803187 65803487 -84980066 + AluSp SINE Alu 1 301 -12 2261 118 0 3 chr11 65804157 65804461 -84979092 - AluSg SINE Alu -7 303 1 2078 115 10 32 chr11 65804483 65804796 -84978757 - AluSg SINE Alu -4 306 1 2170 125 0 7 chr11 65804798 65805102 -84978451 - AluSx SINE Alu -9 303 2 2166 84 0 0 chr11 65805220 65805494 -84978059 - AluSx SINE Alu -38 274 1 315 192 0 0 chr11 65807194 65807267 -84976286 + (CCCCAG)n Simple_repeat Simple_repeat 1 73 0 2306 82 0 41 chr11 65808079 65808398 -84975155 - AluY SINE Alu -5 306 1 1403 112 48 115 chr11 65808401 65808713 -84974840 - AluYb8 SINE Alu -20 298 8 1561 129 0 0 chr11 65808713 65808923 -84974630 - AluSx SINE Alu -102 210 1 2413 97 0 0 chr11 65809198 65809498 -84974055 - AluSx SINE Alu -12 300 1 410 304 54 0 chr11 65809602 65809714 -84973839 + MIR SINE MIR 38 155 -107 2176 105 20 14 chr11 65811395 65811711 -84971842 + AluSx SINE Alu 1 312 0 203 247 12 49 chr11 65813990 65814071 -84969482 + CT-rich Low_complexity Low_complexity 3 80 0 366 200 137 0 chr11 65815575 65815670 -84967883 + MER91C DNA MER1_type 12 119 -21 189 94 0 0 chr11 65816361 65816393 -84967160 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 2372 58 0 0 chr11 65816396 65816672 -84966881 - AluY SINE Alu -35 276 1 23 0 0 0 chr11 65819996 65820019 -84963534 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr11 65820113 65820139 -84963414 + (T)n Simple_repeat Simple_repeat 1 26 0 201 39 0 0 chr11 65820253 65820279 -84963274 + (T)n Simple_repeat Simple_repeat 1 26 0 1946 104 11 15 chr11 65821086 65821354 -84962199 - AluSx SINE Alu -45 267 1 2371 52 42 0 chr11 65821614 65821900 -84961653 - AluY SINE Alu -13 298 1 555 310 99 26 chr11 65822384 65822833 -84960720 - L2 LINE L2 -177 3136 2650 1787 112 15 34 chr11 65822837 65823106 -84960447 - AluSg SINE Alu -10 300 37 1250 202 21 97 chr11 65824542 65824924 -84958629 - MLT1B LTR MaLR -37 353 1 1216 211 31 103 chr11 65824924 65825340 -84958213 - L1MC4a LINE L1 -1037 6771 6386 790 253 98 0 chr11 65825349 65825626 -84957927 + L1MCa LINE L1 28 331 -6095 22 0 0 0 chr11 65826420 65826442 -84957111 + AT_rich Low_complexity Low_complexity 1 22 0 973 209 41 0 chr11 65826452 65826624 -84956929 + AluJo SINE Alu 5 183 -129 22 88 0 0 chr11 65826653 65826710 -84956843 + AT_rich Low_complexity Low_complexity 1 57 0 2549 108 22 0 chr11 65826761 65827168 -84956385 - L1PBa LINE L1 -4120 2743 2328 180 158 0 0 chr11 65827268 65827306 -84956247 + A-rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr11 65827328 65827357 -84956196 + AT_rich Low_complexity Low_complexity 1 29 0 195 129 0 0 chr11 65827378 65827409 -84956144 + (T)n Simple_repeat Simple_repeat 1 31 0 565 290 76 17 chr11 65828675 65828913 -84954640 + MIR SINE MIR 1 252 -10 346 320 66 66 chr11 65829010 65829238 -84954315 + L2 LINE L2 3039 3266 -6 2143 103 3 0 chr11 65829523 65829838 -84953715 + AluSx SINE Alu 2 317 0 1996 98 76 0 chr11 65829912 65830189 -84953364 + AluSx SINE Alu 1 298 -14 2323 127 0 0 chr11 65830409 65830717 -84952836 + AluSx SINE Alu 1 308 -4 1827 94 8 0 chr11 65831665 65831919 -84951634 - L1PB1 LINE L1 0 6151 5896 707 305 70 31 chr11 65832003 65832390 -84951163 - L1M4 LINE L1 -2614 3532 3131 1030 128 12 37 chr11 65832421 65832585 -84950968 + AluJb SINE Alu 129 288 -24 315 177 0 0 chr11 65832585 65832647 -84950906 + G-rich Low_complexity Low_complexity 1 62 0 944 117 167 11 chr11 65832747 65832927 -84950626 + pTR5 LTR ERV1 1818 2025 -413 269 313 0 0 chr11 65832927 65833026 -84950527 + LTR30 LTR ERV1 544 642 -80 2311 87 3 0 chr11 65833026 65833349 -84950204 + pTR5 LTR ERV1 66 389 -2049 261 337 49 99 chr11 65833349 65833386 -84950167 + L2 LINE L2 2677 2714 -600 2402 84 10 0 chr11 65833386 65833694 -84949859 + AluY SINE Alu 1 311 0 261 337 49 99 chr11 65833694 65833899 -84949654 + L2 LINE L2 2714 2907 -407 25 0 0 0 chr11 65834050 65834075 -84949478 + AT_rich Low_complexity Low_complexity 1 25 0 300 213 0 0 chr11 65834203 65834264 -84949289 + MER51A LTR ERV1 558 618 -16 23 0 0 0 chr11 65834946 65834969 -84948584 + AT_rich Low_complexity Low_complexity 1 23 0 286 295 105 0 chr11 65834970 65835065 -84948488 - MER5A DNA MER1_type 0 189 85 181 342 179 0 chr11 65835130 65835247 -84948306 - L2 LINE L2 -504 2810 2673 282 29 0 0 chr11 65836006 65836041 -84947512 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 213 242 44 66 chr11 65836414 65836505 -84947048 - MIR SINE MIR -10 252 164 22 0 0 0 chr11 65837026 65837048 -84946505 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr11 65838131 65838160 -84945393 + AT_rich Low_complexity Low_complexity 1 29 0 2252 94 13 13 chr11 65839001 65839309 -84944244 - AluSp SINE Alu -1 312 5 1723 176 123 14 chr11 65839691 65840048 -84943505 + MSTD LTR MaLR 1 396 0 2151 106 3 0 chr11 65840294 65840576 -84942977 + AluSp SINE Alu 1 283 -30 282 287 35 0 chr11 65841960 65842047 -84941506 - MIR3 SINE MIR -3 205 116 236 182 409 0 chr11 65842054 65842131 -84941422 + L2 LINE L2 3160 3267 -5 1500 86 0 0 chr11 65843289 65843475 -84940078 + AluSq SINE Alu 1 186 -127 2344 75 27 0 chr11 65844134 65844429 -84939124 + AluSq SINE Alu 1 303 -10 2024 117 0 24 chr11 65844545 65844843 -84938710 - AluSg1 SINE Alu -18 291 1 1946 174 0 3 chr11 65844885 65845196 -84938357 + AluSx SINE Alu 1 310 -2 1634 179 123 14 chr11 65845378 65845735 -84937818 + MSTD LTR MaLR 1 396 0 2054 123 7 10 chr11 65845981 65846273 -84937280 + AluSx SINE Alu 1 291 -21 2324 83 0 29 chr11 65846273 65846586 -84936967 + AluY SINE Alu 1 304 -7 312 86 0 52 chr11 65846700 65846758 -84936795 + Alu SINE Alu 246 300 0 2353 86 0 26 chr11 65846766 65847079 -84936474 + AluY SINE Alu 1 305 -6 352 253 20 20 chr11 65847162 65847261 -84936292 - MIR SINE MIR -111 151 53 2265 89 3 0 chr11 65849402 65849693 -84933860 + AluSp SINE Alu 1 292 -21 195 42 0 0 chr11 65849740 65849764 -84933789 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 2187 76 3 7 chr11 65851401 65851691 -84931862 - AluSx SINE Alu -23 289 1 1910 130 63 28 chr11 65853297 65853659 -84929894 + THE1C LTR MaLR 1 375 0 2114 123 13 0 chr11 65854507 65854808 -84928745 + AluSp SINE Alu 1 305 -8 427 101 174 0 chr11 65854814 65854883 -84928670 + AluSg/x SINE Alu 117 197 -115 332 161 12 0 chr11 65854894 65854975 -84928578 + (TA)n Simple_repeat Simple_repeat 2 83 0 625 162 17 8 chr11 65854983 65855100 -84928453 - FLAM_C SINE Alu -15 118 1 28 0 0 0 chr11 65855100 65855128 -84928425 + AT_rich Low_complexity Low_complexity 1 28 0 495 229 78 13 chr11 65855130 65855283 -84928270 - FRAM SINE Alu -3 163 1 2204 176 37 7 chr11 65855492 65855924 -84927629 - MSTB2 LTR MaLR 0 457 13 412 322 104 43 chr11 65856513 65856743 -84926810 - L2 LINE L2 -19 3294 3051 546 354 45 8 chr11 65857048 65857294 -84926259 - MIR SINE MIR 0 262 8 493 254 51 83 chr11 65857842 65858118 -84925435 + MLT1D LTR MaLR 12 278 -227 1248 222 12 29 chr11 65858808 65859151 -84924402 + L1M3 LINE L1 5402 5738 -442 1554 88 0 9 chr11 65859744 65859960 -84923593 + L1PA8 LINE L1 5944 6157 -15 411 100 133 44 chr11 65860073 65860163 -84923390 + Tigger7 DNA MER2_type 2394 2491 0 1918 113 0 119 chr11 65860708 65861045 -84922508 - AluSx SINE Alu -15 297 1 23 54 0 0 chr11 65861492 65861529 -84922024 + AT_rich Low_complexity Low_complexity 1 37 0 432 268 0 59 chr11 65862009 65862162 -84921391 - MIR SINE MIR -37 225 82 707 92 36 3 chr11 65862412 65862649 -84920904 + AluSx SINE Alu 1 303 0 449 152 65 11 chr11 65863163 65863255 -84920298 + MLT1D LTR MaLR 446 542 0 186 103 0 0 chr11 65864104 65864133 -84919420 + (TA)n Simple_repeat Simple_repeat 1 29 0 2035 131 27 56 chr11 65864910 65865285 -84918268 - THE1B LTR MaLR 0 364 1 425 289 32 21 chr11 65865327 65865517 -84918036 + ERVL LTR ERVL 3619 3810 -1954 501 304 52 45 chr11 65865541 65865922 -84917631 + ERVL LTR ERVL 5031 5414 -350 1911 135 7 11 chr11 65866346 65866628 -84916925 + AluSx SINE Alu 15 295 -17 426 317 50 44 chr11 65866725 65866932 -84916621 - MIR3 SINE MIR -52 210 5 2744 151 43 16 chr11 65867799 65868381 -84915172 + L1 LINE L1 4110 4707 -1439 22 0 0 0 chr11 65869979 65870001 -84913552 + AT_rich Low_complexity Low_complexity 1 22 0 1371 258 95 4 chr11 65871469 65872007 -84911546 + L1MC4 LINE L1 6862 7448 -594 248 233 89 0 chr11 65872010 65872100 -84911453 + L1MC4 LINE L1 7920 8017 -25 2077 142 134 8 chr11 65872311 65872691 -84910862 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr11 65872800 65872822 -84910731 + AT_rich Low_complexity Low_complexity 1 22 0 185 0 0 39 chr11 65873654 65873680 -84909873 + (TTA)n Simple_repeat Simple_repeat 3 27 0 441 297 82 31 chr11 65875336 65875750 -84907803 + HAL1b LINE L1 212 646 -702 22 56 0 0 chr11 65878388 65878424 -84905129 + AT_rich Low_complexity Low_complexity 1 36 0 740 224 105 105 chr11 65878468 65878716 -84904837 - LTR40b LTR ERVL 0 462 212 2014 151 10 0 chr11 65878716 65879021 -84904532 + AluSg SINE Alu 1 308 -2 740 224 105 105 chr11 65879021 65879116 -84904437 - LTR40b LTR ERVL -249 213 119 23 77 0 0 chr11 65879703 65879742 -84903811 + AT_rich Low_complexity Low_complexity 1 39 0 1151 248 58 29 chr11 65879947 65880395 -84903158 + MLT1C LTR MaLR 1 461 -6 1854 134 25 38 chr11 65880807 65881121 -84902432 + AluSg SINE Alu 1 310 0 497 209 64 48 chr11 65881432 65881619 -84901934 - LTR41 LTR ERVL -583 190 1 338 306 113 36 chr11 65882061 65882336 -84901217 - L2 LINE L2 -109 3204 2909 248 271 93 25 chr11 65882947 65883065 -84900488 + L2 LINE L2 1871 1996 -1318 270 206 0 0 chr11 65883186 65883249 -84900304 + (TATG)n Simple_repeat Simple_repeat 2 64 0 414 335 108 6 chr11 65883445 65883621 -84899932 - L3 LINE CR1 -12 1565 1372 2339 75 27 0 chr11 65883622 65883917 -84899636 + AluSq SINE Alu 1 303 -10 21 0 0 0 chr11 65884070 65884091 -84899462 + GC_rich Low_complexity Low_complexity 1 21 0 7175 52 0 3 chr11 65884122 65885600 -84897953 + L1PA7 LINE L1 4678 6154 0 1350 118 4 35 chr11 65885609 65885838 -84897715 - THE1C LTR MaLR -34 341 120 562 276 188 9 chr11 65885954 65886360 -84897193 + MLT1G1 LTR MaLR 84 592 -3 640 321 57 32 chr11 65886431 65886802 -84896751 - HERVL LTR ERVL -2566 3088 2709 22 0 0 0 chr11 65887259 65887281 -84896272 + AT_rich Low_complexity Low_complexity 1 22 0 313 154 89 8 chr11 65887364 65887435 -84896118 + THE1C LTR MaLR 3 69 -306 4700 134 11 7 chr11 65887535 65888826 -84894727 - L1PBa LINE L1 -4786 2077 636 1004 190 5 0 chr11 65888827 65889022 -84894531 - L1PBa LINE L1 -6662 201 6 375 133 11 67 chr11 65889066 65889156 -84894397 + MLT1D LTR MaLR 1 85 -420 303 28 0 0 chr11 65889914 65889950 -84893603 + (CA)n Simple_repeat Simple_repeat 2 37 0 278 146 0 21 chr11 65890089 65890137 -84893416 - MSTA LTR MaLR 0 428 382 10994 67 8 1 chr11 65890137 65891622 -84891931 + L1P3 LINE L1 10 1504 -4957 238 347 96 37 chr11 65891724 65892093 -84891460 + L2 LINE L2 2674 3059 -213 28 0 0 0 chr11 65892204 65892232 -84891321 + AT_rich Low_complexity Low_complexity 1 28 0 191 195 0 49 chr11 65892283 65892324 -84891229 + L2 LINE L2 3263 3301 -12 518 297 53 30 chr11 65892529 65892819 -84890734 + L2 LINE L2 2756 3050 -263 * 650 93 0 10 chr11 65892815 65892912 -84890641 - AluY SINE Alu -2 309 214 366 305 11 0 chr11 65892997 65893092 -84890461 + L2 LINE L2 3218 3313 0 371 306 22 52 chr11 65893223 65893357 -84890196 + MIR SINE MIR 32 161 -101 194 265 20 20 chr11 65893507 65893556 -84889997 + MIR SINE MIR 49 97 -165 2109 112 0 0 chr11 65893911 65894206 -84889347 - AluSq SINE Alu -18 295 1 947 288 33 12 chr11 65894206 65894646 -84888907 - L1ME3A LINE L1 -236 5934 5486 832 256 38 0 chr11 65894859 65895070 -84888483 - MER20 DNA MER1_type 0 219 1 303 288 0 0 chr11 65895435 65895501 -84888052 + L1MDa LINE L1 17 82 -6458 2571 263 94 9 chr11 65895511 65896225 -84887328 + L1MDa LINE L1 58 802 -5738 614 286 48 9 chr11 65896242 65896469 -84887084 + L1M4 LINE L1 3177 3412 -2734 254 182 0 0 chr11 65896490 65896545 -84887008 + L1M4 LINE L1 4637 4691 -1455 473 231 83 0 chr11 65896828 65896936 -84886617 - MIR SINE MIR -95 167 51 2249 70 0 3 chr11 65898230 65898531 -84885022 - AluY SINE Alu -11 300 1 201 74 0 0 chr11 65898598 65898625 -84884928 + (GAA)n Simple_repeat Simple_repeat 2 28 0 202 227 0 45 chr11 65899974 65900040 -84883513 + (CA)n Simple_repeat Simple_repeat 2 64 0 267 313 83 0 chr11 65900712 65900808 -84882745 + L2 LINE L2 3156 3259 -13 232 182 0 23 chr11 65901077 65901121 -84882432 - MIR SINE MIR -62 146 104 1600 130 87 4 chr11 65902063 65902339 -84881214 + AluJb SINE Alu 1 299 -13 334 345 91 35 chr11 65903008 65903205 -84880348 + L1MC/D LINE L1 5296 5503 -2305 30 0 0 0 chr11 65904540 65904570 -84878983 + AT_rich Low_complexity Low_complexity 1 30 0 348 319 95 77 chr11 65905243 65905935 -84877618 - L2 LINE L2 -1 3271 2587 550 138 0 11 chr11 65906847 65906934 -84876619 - MSTB LTR MaLR -296 130 45 * 1758 151 51 16 chr11 65906931 65907243 -84876310 + LTR18B LTR ERVL 292 614 0 1605 148 15 7 chr11 65907264 65907535 -84876018 + HERVL18 LTR ERVL 19 291 -5756 831 237 12 0 chr11 65907535 65907708 -84875845 + HERVL18 LTR ERVL 492 666 -5381 1152 180 6 13 chr11 65907736 65908098 -84875455 + HERVL18 LTR ERVL 1388 1810 -4237 657 175 20 14 chr11 65908097 65908323 -84875230 + HERVL18 LTR ERVL 2119 2452 -3595 * 984 183 0 7 chr11 65908320 65908517 -84875036 + HERVL18 LTR ERVL 2718 2959 -3088 3260 180 25 2 chr11 65908566 65909094 -84874459 + HERVL18 LTR ERVL 2952 3491 -2556 4003 127 26 12 chr11 65909295 65909900 -84873653 + LTR18B LTR ERVL 1 614 0 385 292 46 39 chr11 65909925 65910055 -84873498 - HAL1b LINE L1 -1110 238 108 1046 130 135 22 chr11 65910058 65910243 -84873310 - MLT1D LTR MaLR 0 505 300 329 310 4 92 chr11 65911389 65911670 -84871883 - MLT1K LTR MaLR -7 581 326 21 57 0 0 chr11 65912169 65912204 -84871349 + AT_rich Low_complexity Low_complexity 1 35 0 21 82 0 0 chr11 65912609 65912658 -84870895 + AT_rich Low_complexity Low_complexity 1 49 0 314 303 43 43 chr11 65912940 65913125 -84870428 + L2 LINE L2 3121 3305 -8 1140 146 5 10 chr11 65913156 65913362 -84870191 + L1MA8 LINE L1 6085 6289 -2 288 320 94 8 chr11 65913380 65913508 -84870045 + L2 LINE L2 3134 3272 0 336 127 79 0 chr11 65913711 65913774 -84869779 + MADE1 DNA Mariner 13 80 0 2286 146 77 20 chr11 65914901 65915306 -84868247 - MSTA LTR MaLR 0 428 1 250 158 0 0 chr11 65915581 65915619 -84867934 + MER75 DNA T2_type 453 490 -14 274 250 91 0 chr11 65916318 65916406 -84867147 - MER94 DNA DNA -38 96 1 1893 192 39 31 chr11 65916407 65916935 -84866618 + MLT2A2 LTR ERVL 1 542 -12 1510 198 68 10 chr11 65918192 65918485 -84865068 + MLT1A1 LTR MaLR 53 362 -3 1658 182 31 20 chr11 65918526 65918878 -84864675 + MER63B DNA MER1_type 1 356 -80 6491 21 1 1 chr11 65919101 65919924 -84863629 + L1PA3 LINE L1 5178 6000 -155 2508 61 0 6 chr11 65920045 65920358 -84863195 - AluY SINE Alu 0 311 1 324 149 0 30 chr11 65920358 65920425 -84863128 - L1MDa LINE L1 -4616 1464 1400 1151 175 64 105 chr11 65920433 65920713 -84862840 - AluJo SINE Alu -1 301 11 2055 127 0 19 chr11 65920713 65921029 -84862524 - AluSq SINE Alu -3 310 1 1823 99 0 4 chr11 65921039 65921292 -84862261 - AluSq SINE Alu -11 302 51 1151 175 64 105 chr11 65921292 65921314 -84862239 - AluJo SINE Alu -280 22 1 331 200 104 9 chr11 65921316 65921431 -84862122 - L1MDa LINE L1 -4900 1078 953 23 54 0 0 chr11 65921450 65921487 -84862066 + AT_rich Low_complexity Low_complexity 1 37 0 973 201 127 24 chr11 65921492 65921861 -84861692 - L1MDa LINE L1 -5147 923 517 452 253 25 68 chr11 65921958 65922077 -84861476 - L2 LINE L2 -1371 1943 1831 1608 121 148 8 chr11 65922077 65922341 -84861212 + AluSx SINE Alu 2 302 0 452 253 25 68 chr11 65922341 65922383 -84861170 - L2 LINE L2 -1483 1831 1789 904 122 59 95 chr11 65922394 65922615 -84860938 - AluSc SINE Alu -14 295 83 286 237 108 11 chr11 65922615 65922708 -84860845 - L2 LINE L2 -1515 1799 1698 1279 210 11 4 chr11 65922746 65923008 -84860545 + AluJo SINE Alu 26 289 -23 402 296 123 14 chr11 65923010 65923230 -84860323 - L1MC4 LINE L1 -6 8036 7793 569 167 49 0 chr11 65923234 65923336 -84860217 + U6 snRNA snRNA 1 107 0 620 137 8 17 chr11 65923336 65923453 -84860100 + L1PA15 LINE L1 6050 6165 0 2280 96 0 0 chr11 65923465 65923767 -84859786 + AluSx SINE Alu 1 302 -10 29 0 0 0 chr11 65923955 65923984 -84859569 + AT_rich Low_complexity Low_complexity 1 29 0 2150 103 0 0 chr11 65923996 65924287 -84859266 + AluSc SINE Alu 1 291 -18 1440 128 121 8 chr11 65924408 65924673 -84858880 + AluSg1 SINE Alu 1 295 -14 1122 113 11 38 chr11 65924673 65924858 -84858695 + AluSp SINE Alu 134 313 0 290 279 16 50 chr11 65925445 65925637 -84857916 + GA-rich Low_complexity Low_complexity 1 185 0 1070 155 28 0 chr11 65926995 65927176 -84856377 - AluJo SINE Alu -7 305 120 748 164 86 8 chr11 65927188 65927316 -84856237 - AluJo/FRAM SINE Alu -23 289 152 434 238 0 0 chr11 65927315 65927395 -84856158 - AluJ/FLAM SINE Alu -231 81 2 * 1780 161 3 3 chr11 65928841 65929133 -84854420 - AluJo SINE Alu -20 292 1 2104 95 11 0 chr11 65929436 65929720 -84853833 + AluSg SINE Alu 1 287 -23 255 289 16 41 chr11 65931073 65931194 -84852359 - MIR SINE MIR -6 256 139 287 276 46 0 chr11 65935102 65935189 -84848364 + MIR SINE MIR 80 170 -92 2338 68 0 0 chr11 65935193 65935485 -84848068 - AluY SINE Alu -19 292 1 2050 122 3 0 chr11 65935485 65935781 -84847772 - AluSx SINE Alu -15 297 1 1427 195 24 7 chr11 65935783 65936070 -84847483 - AluJo SINE Alu -18 294 3 2126 52 3 21 chr11 65936198 65936484 -84847069 - AluY SINE Alu -30 281 1 449 230 96 15 chr11 65936514 65936649 -84846904 - MIR SINE MIR 0 262 117 1399 158 4 24 chr11 65936655 65936909 -84846644 + AluJb SINE Alu 10 258 -54 364 342 27 0 chr11 65936953 65937064 -84846489 + L2 LINE L2 3153 3266 -6 1225 195 60 50 chr11 65937108 65937399 -84846154 + AluSx SINE Alu 2 298 -4 2212 101 3 22 chr11 65937399 65937717 -84845836 + AluSx SINE Alu 1 312 0 299 279 16 50 chr11 65938304 65938496 -84845057 + GA-rich Low_complexity Low_complexity 1 185 0 1003 166 11 0 chr11 65939853 65940028 -84843525 - FRAM SINE Alu -7 169 1 637 177 85 15 chr11 65940044 65940174 -84843379 - FRAM SINE Alu -22 154 16 396 237 13 0 chr11 65940178 65940254 -84843299 - AluJ/FLAM SINE Alu -225 77 1 1780 161 3 3 chr11 65941697 65941989 -84841564 - AluJo SINE Alu -20 292 1 2090 99 11 0 chr11 65942291 65942575 -84840978 + AluSg SINE Alu 1 287 -23 262 316 22 29 chr11 65943927 65944066 -84839487 - MIR SINE MIR -6 256 119 362 257 160 27 chr11 65946040 65946227 -84837326 + MIR SINE MIR 51 262 0 1703 162 24 30 chr11 65946389 65946686 -84836867 + AluJb SINE Alu 1 295 -17 28 48 0 0 chr11 65947034 65947076 -84836477 + GC_rich Low_complexity Low_complexity 1 42 0 244 254 0 0 chr11 65947815 65947870 -84835683 + L2 LINE L2 3259 3313 0 2226 73 3 36 chr11 65948389 65948690 -84834863 + AluY SINE Alu 3 293 -18 2214 110 10 0 chr11 65948731 65949032 -84834521 + AluSx SINE Alu 1 304 -8 252 277 27 80 chr11 65949138 65949250 -84834303 + MER5B DNA MER1_type 1 106 -72 633 277 178 16 chr11 65949455 65949769 -84833784 + L2 LINE L2 1336 1700 -1614 1988 131 18 0 chr11 65949914 65950197 -84833356 - AluSp SINE Alu -23 290 3 1080 146 12 6 chr11 65950206 65950367 -84833186 - AluSg/x SINE Alu -18 294 130 1578 128 121 8 chr11 65950367 65950632 -84832921 - AluSg1 SINE Alu -14 295 1 2304 103 0 0 chr11 65950753 65951044 -84832509 - AluSc SINE Alu -18 291 1 29 0 0 0 chr11 65951056 65951085 -84832468 + AT_rich Low_complexity Low_complexity 1 29 0 2442 96 0 0 chr11 65951273 65951575 -84831978 - AluSx SINE Alu -10 302 1 584 137 8 17 chr11 65951587 65951704 -84831849 - L1PA15 LINE L1 0 6165 6050 537 167 49 0 chr11 65951704 65951806 -84831747 - U6 snRNA snRNA 0 107 1 366 311 131 0 chr11 65951810 65952016 -84831537 + L1MC4 LINE L1 7793 8025 -17 1407 201 11 25 chr11 65952016 65952294 -84831259 - AluJo SINE Alu -13 299 26 259 237 108 11 chr11 65952332 65952425 -84831128 + L2 LINE L2 1698 1799 -1515 264 98 20 39 chr11 65952425 65952476 -84831077 + AluY SINE Alu 83 132 -169 1032 99 0 0 chr11 65952617 65952748 -84830805 - AluSg SINE Alu -179 131 1 1311 161 142 19 chr11 65952751 65953018 -84830535 - AluJb SINE Alu 0 302 3 2125 67 0 11 chr11 65953073 65953341 -84830212 + AluSc SINE Alu 1 265 -44 279 133 0 0 chr11 65953341 65953386 -84830167 - AluS SINE Alu -29 271 227 301 288 38 0 chr11 65953424 65953504 -84830049 + L1M4 LINE L1 3796 3878 -2268 2288 110 0 22 chr11 65953529 65953848 -84829705 + AluSx SINE Alu 1 312 0 1547 97 5 0 chr11 65954094 65954290 -84829263 - AluSp SINE Alu -116 197 1 509 86 148 0 chr11 65954301 65954382 -84829171 + AluSp/q SINE Alu 193 285 -28 725 22 11 0 chr11 65954383 65954474 -84829079 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 247 33 0 0 chr11 65954502 65954560 -84828993 + AluSp/q SINE Alu 254 311 0 257 298 12 0 chr11 65954561 65954645 -84828908 - MIR SINE MIR -8 254 170 2343 82 0 3 chr11 65954730 65955023 -84828530 + AluSc SINE Alu 1 292 -17 198 0 0 0 chr11 65955129 65955151 -84828402 + (T)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr11 65955343 65955364 -84828189 + GC_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr11 65955526 65955558 -84827995 + AT_rich Low_complexity Low_complexity 1 32 0 261 0 0 0 chr11 65955706 65955735 -84827818 + (T)n Simple_repeat Simple_repeat 1 29 0 401 280 0 19 chr11 65955740 65955847 -84827706 + L1MC3 LINE L1 7075 7179 -606 286 211 67 11 chr11 65955965 65956055 -84827498 + U2 snRNA snRNA 1 95 -93 2060 138 24 0 chr11 65956489 65956785 -84826768 - AluSx SINE Alu -3 309 7 2046 78 71 36 chr11 65956993 65957274 -84826279 + AluY SINE Alu 1 291 -20 2407 104 0 0 chr11 65957288 65957595 -84825958 - AluSq SINE Alu -6 307 1 1622 182 14 20 chr11 65957597 65957893 -84825660 - AluJb SINE Alu -18 294 1 2102 145 7 0 chr11 65958317 65958627 -84824926 - AluSq SINE Alu 0 313 2 2127 142 7 0 chr11 65958777 65959087 -84824466 - AluSx SINE Alu 0 312 1 426 319 113 59 chr11 65959137 65959563 -84823990 - L2 LINE L2 0 3272 2824 2206 120 3 10 chr11 65959603 65959911 -84823642 + AluSx SINE Alu 1 306 -6 521 227 0 16 chr11 65960014 65960142 -84823411 - FRAM SINE Alu -11 165 40 2531 51 3 0 chr11 65960198 65960492 -84823061 - AluY SINE Alu -16 295 1 2356 87 3 3 chr11 65960494 65960792 -84822761 - AluSp SINE Alu -15 298 1 2429 96 0 3 chr11 65962537 65962850 -84820703 - AluSq SINE Alu -1 312 1 2004 134 49 27 chr11 65963534 65963899 -84819654 + MLT1B LTR MaLR 1 373 -17 504 216 160 92 chr11 65963925 65964175 -84819378 + MLT1L LTR MaLR 206 472 -143 295 111 111 0 chr11 65964237 65964291 -84819262 + MLT1K LTR MaLR 528 587 -1 2262 124 0 0 chr11 65964315 65964613 -84818940 + AluSx SINE Alu 1 298 -14 281 274 0 0 chr11 65964806 65964868 -84818685 - MIR SINE MIR -62 146 85 1799 190 119 9 chr11 65965245 65965666 -84817887 + MLT1C LTR MaLR 1 467 0 541 256 47 58 chr11 65965706 65965964 -84817589 + MER112 DNA MER1_type 1 255 -1 320 277 62 18 chr11 65965964 65966076 -84817477 + L2 LINE L2 3192 3308 -5 280 362 36 22 chr11 65966078 65966216 -84817337 - MIR SINE MIR -91 171 32 2417 78 3 0 chr11 65966521 65966814 -84816739 - AluSp SINE Alu -19 294 1 378 271 102 6 chr11 65966887 65967053 -84816500 + L2 LINE L2 240 421 -2893 269 358 103 13 chr11 65967097 65967407 -84816146 - L2 LINE L2 -338 2976 2639 953 167 33 54 chr11 65967428 65967469 -84816084 + MER58 DNA MER1_type 45 85 -2335 2073 96 17 20 chr11 65967469 65967761 -84815792 - AluSx SINE Alu -21 291 1 953 167 33 54 chr11 65967761 65967959 -84815594 + MER58 DNA MER1_type 85 279 -2141 534 161 0 71 chr11 65967956 65968068 -84815485 + MER58 DNA MER1_type 2317 2420 0 * 318 272 183 31 chr11 65968068 65968259 -84815294 - L2 LINE L2 -681 2633 2414 781 190 61 0 chr11 65970159 65970322 -84813231 - MER5A DNA MER1_type 0 189 17 2468 194 115 23 chr11 65970322 65970881 -84812672 + MER77 LTR ERV1 1 660 -9 205 246 62 0 chr11 65971070 65971135 -84812418 + MIR3 SINE MIR 86 154 -54 461 291 34 11 chr11 65974335 65974510 -84809043 - MIR SINE MIR -12 250 72 1582 154 9 31 chr11 65974858 65975176 -84808377 + AluY SINE Alu 1 311 0 185 258 45 34 chr11 65975477 65975566 -84807987 + MIR SINE MIR 63 152 -56 704 217 36 59 chr11 65975873 65976094 -84807459 + MIR SINE MIR 23 238 -24 2058 104 0 77 chr11 65976165 65976318 -84807235 + AluSp SINE Alu 1 117 -196 291 54 0 0 chr11 65976318 65976355 -84807198 + (CA)n Simple_repeat Simple_repeat 2 38 0 2058 104 0 77 chr11 65976355 65976527 -84807026 + AluSp SINE Alu 117 301 -12 1975 122 17 7 chr11 65976541 65976829 -84806724 + AluY SINE Alu 5 295 -16 921 188 94 0 chr11 65976842 65977034 -84806519 + AluSq SINE Alu 49 258 -55 407 255 140 32 chr11 65977061 65977218 -84806335 + AluJo SINE Alu 122 295 -7 487 276 0 8 chr11 65977722 65977849 -84805704 + FLAM_C SINE Alu 3 128 -5 287 278 130 0 chr11 65981951 65982066 -84801487 - MIR SINE MIR -8 254 125 2504 72 10 0 chr11 65982215 65982520 -84801033 - AluSp SINE Alu -5 308 1 2042 115 3 10 chr11 65982525 65982821 -84800732 - AluSx SINE Alu -18 294 1 1740 129 0 54 chr11 65982824 65983119 -84800434 + AluJb SINE Alu 30 308 -4 377 268 92 0 chr11 65983690 65983832 -84799721 - Charlie8 DNA MER1_type -2186 231 77 1980 107 19 57 chr11 65983832 65983915 -84799638 + AluSq SINE Alu 1 86 -227 8515 48 10 0 chr11 65983915 65984874 -84798679 - LTR5 LTR ERVK 0 969 1 1980 107 19 57 chr11 65984874 65985107 -84798446 + AluSq SINE Alu 86 305 -8 1393 157 39 99 chr11 65985235 65985617 -84797936 - LTR5 LTR ERVK 0 969 611 1741 56 0 23 chr11 65985617 65985831 -84797722 + AluY SINE Alu 1 209 -102 226 88 0 0 chr11 65985831 65985865 -84797688 + AluY SINE Alu 267 300 -8 3820 154 16 7 chr11 65985865 65986480 -84797073 - LTR5 LTR ERVK -348 621 1 1375 157 103 4 chr11 65986480 65986722 -84796831 + AluJo SINE Alu 26 291 -21 990 170 66 11 chr11 65986739 65986921 -84796632 - AluJo SINE Alu -84 228 37 198 288 30 0 chr11 65986945 65987011 -84796542 + L2 LINE L2 2632 2699 -615 2251 110 3 0 chr11 65987030 65987321 -84796232 + AluSp SINE Alu 1 292 -21 393 169 0 0 chr11 65987321 65987386 -84796167 + AluS SINE Alu 233 297 -4 2181 106 3 23 chr11 65987448 65987751 -84795802 + AluSx SINE Alu 1 297 -15 1920 125 14 14 chr11 65987753 65988048 -84795505 + AluSx SINE Alu 1 295 -17 462 169 0 0 chr11 65988060 65988137 -84795416 + AluJ/FLAM SINE Alu 2 78 -234 332 222 54 84 chr11 65988137 65988176 -84795377 - L1MDa LINE L1 -4004 2536 2497 2286 81 30 7 chr11 65988176 65988474 -84795079 - AluY SINE Alu -5 306 2 332 222 54 84 chr11 65988474 65988673 -84794880 - L1MDa LINE L1 -4043 2497 2305 2180 126 0 3 chr11 65988693 65988987 -84794566 + AluSc SINE Alu 1 293 -16 2063 114 40 0 chr11 65989109 65989408 -84794145 + AluSq SINE Alu 1 311 -2 2192 123 0 0 chr11 65989414 65989734 -84793819 + AluSc SINE Alu 3 322 0 1992 166 0 0 chr11 65989747 65990042 -84793511 + AluSx SINE Alu 1 295 -17 490 296 160 12 chr11 65990044 65990484 -84793069 + L2 LINE L2 2737 3251 -62 729 274 49 88 chr11 65990617 65990843 -84792710 + L2 LINE L2 2846 3079 -234 1921 145 21 3 chr11 65990843 65991132 -84792421 - AluJb SINE Alu -14 298 5 729 274 49 88 chr11 65991132 65991211 -84792342 + L2 LINE L2 3079 3160 -153 1920 148 0 23 chr11 65991211 65991515 -84792038 - AluJo SINE Alu -10 302 6 729 274 49 88 chr11 65991515 65991694 -84791859 + L2 LINE L2 3160 3312 -1 934 213 15 10 chr11 65992263 65992460 -84791093 + MIR SINE MIR 12 209 -53 2137 106 0 7 chr11 65993652 65993934 -84789619 + AluSc SINE Alu 13 292 -17 557 54 0 0 chr11 65993944 65994257 -84789296 + AluSx SINE Alu 2 314 0 2133 108 37 3 chr11 65994274 65994570 -84788983 + AluSq SINE Alu 1 306 -7 692 224 6 6 chr11 65994570 65994731 -84788822 + AluJo/FRAM SINE Alu 134 294 -18 586 301 36 28 chr11 65995433 65995682 -84787871 + MIR SINE MIR 12 262 0 1984 158 7 0 chr11 65995789 65996081 -84787472 - AluJo SINE Alu -18 294 1 2197 96 0 7 chr11 65996113 65996444 -84787109 + AluSc SINE Alu 1 329 0 2010 116 14 0 chr11 65996453 65996763 -84786790 + AluSc SINE Alu 1 314 0 2207 102 3 3 chr11 65996811 65997125 -84786428 + AluSp SINE Alu 1 314 0 1790 179 0 3 chr11 65997150 65997440 -84786113 + AluJb SINE Alu 1 289 -23 1762 95 16 25 chr11 65997451 65997694 -84785859 + AluSq SINE Alu 1 241 -72 1191 97 0 0 chr11 65998162 65998307 -84785246 + AluSq SINE Alu 85 229 -84 31 26 0 0 chr11 65998315 65998353 -84785200 + AT_rich Low_complexity Low_complexity 1 38 0 2027 96 34 27 chr11 65998355 65998648 -84784905 + AluSq SINE Alu 1 295 -18 1081 186 0 11 chr11 65998674 65998862 -84784691 - AluJo SINE Alu -126 186 1 958 191 27 22 chr11 65998908 65999133 -84784420 + AluJo SINE Alu 79 304 -8 931 113 0 53 chr11 66001728 66001879 -84781674 + FLAM_C SINE Alu 1 143 0 654 262 44 6 chr11 66002562 66002745 -84780808 - MIR SINE MIR -43 219 30 289 315 56 25 chr11 66003558 66003720 -84779833 - MIR3 SINE MIR -21 187 21 272 193 0 0 chr11 66004636 66004693 -84778860 + HY1 scRNA scRNA 56 112 0 2206 127 0 10 chr11 66005353 66005660 -84777893 + AluSx SINE Alu 1 304 -8 2388 101 0 16 chr11 66005773 66006090 -84777463 + AluSx SINE Alu 1 312 0 1412 174 4 4 chr11 66006447 66006677 -84776876 + AluJb SINE Alu 65 294 -18 2049 136 3 7 chr11 66006714 66007016 -84776537 - AluSx SINE Alu -11 301 1 2174 65 3 20 chr11 66007041 66007335 -84776218 + AluSq SINE Alu 4 292 -21 490 275 126 0 chr11 66007556 66007738 -84775815 - L2 LINE L2 -373 2941 2737 1992 166 0 0 chr11 66007740 66008035 -84775518 - AluSx SINE Alu -17 295 1 2082 118 7 3 chr11 66008048 66008239 -84775314 - AluSx SINE Alu 0 325 136 216 0 0 0 chr11 66008239 66008263 -84775290 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2352 81 0 3 chr11 66008263 66008546 -84775007 - AluY SINE Alu -29 282 1 2082 118 7 3 chr11 66008546 66008677 -84774876 - AluSx SINE Alu -188 137 1 35 0 0 0 chr11 66008690 66008725 -84774828 + AT_rich Low_complexity Low_complexity 1 35 0 2133 128 3 3 chr11 66008727 66009017 -84774536 - AluSx SINE Alu -22 290 1 1680 166 40 0 chr11 66009129 66009406 -84774147 - AluJb SINE Alu -24 288 1 1458 183 53 20 chr11 66009545 66009846 -84773707 - AluJo SINE Alu 0 312 2 2392 98 0 13 chr11 66010032 66010348 -84773205 - AluSx SINE Alu 0 312 1 180 268 54 0 chr11 66010454 66010510 -84773043 - L2 LINE L2 -1069 2245 2187 1469 135 24 0 chr11 66010706 66010914 -84772639 + AluSx SINE Alu 1 213 -99 307 109 0 0 chr11 66010914 66010969 -84772584 + AluSx SINE Alu 246 300 0 24 0 0 0 chr11 66010974 66010998 -84772555 + GC_rich Low_complexity Low_complexity 1 24 0 2386 94 0 0 chr11 66011145 66011454 -84772099 - AluSc SINE Alu 0 309 1 29 0 0 0 chr11 66011467 66011496 -84772057 + AT_rich Low_complexity Low_complexity 1 29 0 692 160 0 0 chr11 66011504 66011610 -84771943 - FLAM_C SINE Alu -36 107 2 532 273 95 61 chr11 66011612 66011759 -84771794 - L1ME LINE L1 -285 5885 5745 2211 113 7 0 chr11 66011759 66012052 -84771501 - AluSq SINE Alu -18 295 1 532 273 95 61 chr11 66012052 66012187 -84771366 - L1ME LINE L1 -425 5745 5616 2549 71 0 0 chr11 66012187 66012495 -84771058 - AluY SINE Alu -3 308 1 532 273 95 61 chr11 66012495 66012735 -84770818 - L1ME LINE L1 -554 5616 5344 2269 106 7 0 chr11 66012737 66013029 -84770524 - AluSx SINE Alu -18 294 1 2179 90 0 10 chr11 66013083 66013372 -84770181 + AluY SINE Alu 10 295 -16 2192 56 46 14 chr11 66013514 66013799 -84769754 + AluY SINE Alu 1 294 -17 1566 150 4 0 chr11 66013915 66014141 -84769412 - AluSc SINE Alu -82 227 1 1261 113 176 5 chr11 66014283 66014487 -84769066 - AluSg1 SINE Alu -70 239 1 2321 78 0 52 chr11 66014499 66014808 -84768745 - AluSg SINE Alu -17 293 1 2253 95 0 33 chr11 66014859 66015195 -84768358 - AluSc SINE Alu 0 309 1 243 295 96 0 chr11 66015254 66015420 -84768133 - L1ME LINE L1 -1221 4925 4744 595 194 0 16 chr11 66015428 66015552 -84768001 - FLAM_C SINE Alu 0 143 22 2227 90 3 23 chr11 66015558 66015895 -84767658 - AluSg SINE Alu 0 331 1 1890 129 0 26 chr11 66015949 66016259 -84767294 - AluSq SINE Alu -11 302 1 21 0 0 0 chr11 66016263 66016284 -84767269 + AT_rich Low_complexity Low_complexity 1 21 0 626 179 0 0 chr11 66016284 66016390 -84767163 - FLAM_C SINE Alu -16 127 22 253 343 18 12 chr11 66016452 66016621 -84766932 - L1ME LINE L1 -1443 4703 4534 2272 84 3 11 chr11 66016621 66016933 -84766620 - AluY SINE Alu 0 310 1 1793 169 33 13 chr11 66016961 66017262 -84766291 + AluJb SINE Alu 1 307 -5 2243 108 3 0 chr11 66017325 66017621 -84765932 - AluSp SINE Alu -16 297 1 1781 155 0 34 chr11 66017754 66017926 -84765627 - AluJb SINE Alu -25 287 128 2119 100 0 17 chr11 66017926 66018226 -84765327 + AluSg SINE Alu 1 295 -15 1781 155 0 34 chr11 66018226 66018350 -84765203 - AluJb SINE Alu -184 128 1 600 167 75 17 chr11 66018368 66018488 -84765065 - FLAM_C SINE Alu -6 127 1 965 170 5 40 chr11 66018506 66018706 -84764847 - AluJo SINE Alu 0 312 120 189 0 0 0 chr11 66018706 66018727 -84764826 + (T)n Simple_repeat Simple_repeat 1 21 0 25 31 0 0 chr11 66018730 66018762 -84764791 + AT_rich Low_complexity Low_complexity 1 32 0 259 213 0 12 chr11 66019065 66019145 -84764408 + L1M4 LINE L1 3876 3954 -2192 2310 83 0 10 chr11 66019157 66019457 -84764096 + AluY SINE Alu 1 297 -14 2152 71 4 14 chr11 66019475 66019755 -84763798 + AluSc SINE Alu 1 277 -32 301 288 38 0 chr11 66019826 66019906 -84763647 + L1M4 LINE L1 3796 3878 -2268 2113 144 7 0 chr11 66019931 66020230 -84763323 + AluSq SINE Alu 1 301 -12 1087 140 0 18 chr11 66020386 66020550 -84763003 - AluSx SINE Alu -151 161 1 2514 62 3 3 chr11 66020575 66020881 -84762672 + AluSq SINE Alu 4 309 -4 233 293 151 19 chr11 66020962 66021068 -84762485 + L2 LINE L2 3193 3312 -1 258 324 143 0 chr11 66021585 66021690 -84761863 + L2 LINE L2 3193 3312 -1 1115 65 14 0 chr11 66022725 66022864 -84760689 - AluSq SINE Alu -15 298 158 2498 43 13 13 chr11 66022922 66023225 -84760328 + AluY SINE Alu 6 308 -3 252 170 0 0 chr11 66023395 66023442 -84760111 - AluSq SINE Alu -6 295 249 488 172 99 66 chr11 66023442 66023593 -84759960 - AluSq SINE Alu -156 157 2 1369 106 5 29 chr11 66023622 66023756 -84759797 + AluY SINE Alu 1 130 -181 2275 100 0 7 chr11 66023756 66024066 -84759487 + AluSc SINE Alu 1 308 -1 1369 106 5 29 chr11 66024066 66024139 -84759414 + AluY SINE Alu 130 203 -108 1574 27 0 0 chr11 66024341 66024527 -84759026 - U2 snRNA snRNA -2 186 1 241 377 84 0 chr11 66024959 66025113 -84758440 + MIR SINE MIR 21 187 -75 1203 218 77 45 chr11 66025364 66025740 -84757813 - LTR65 LTR ERV1 -97 572 185 2343 113 0 0 chr11 66025839 66026140 -84757413 + AluSx SINE Alu 1 301 -11 2122 174 57 36 chr11 66026145 66026638 -84756915 + MLT1D LTR MaLR 3 505 0 1950 160 7 0 chr11 66026662 66026968 -84756585 + AluJb SINE Alu 1 308 -4 1891 118 11 0 chr11 66027100 66027414 -84756139 - AluSp SINE Alu 0 347 31 1501 78 0 16 chr11 66027417 66027609 -84755944 + AluY SINE Alu 107 295 -16 349 65 0 0 chr11 66027609 66027655 -84755898 - AluSq/x SINE Alu -190 112 67 1085 157 15 40 chr11 66027655 66027853 -84755700 - AluSq SINE Alu -114 199 7 2362 73 13 7 chr11 66027865 66028166 -84755387 - AluY SINE Alu -8 303 1 602 210 0 36 chr11 66028180 66028318 -84755235 - FLAM_C SINE Alu 0 133 1 2126 105 30 24 chr11 66028359 66028654 -84754899 - AluSx SINE Alu -15 297 1 31 26 0 0 chr11 66028656 66028694 -84754859 + AT_rich Low_complexity Low_complexity 1 38 0 1191 97 0 0 chr11 66028702 66028847 -84754706 - AluSq SINE Alu -84 229 85 2365 91 0 31 chr11 66029244 66029563 -84753990 + AluSp SINE Alu 5 313 0 35 24 0 0 chr11 66029575 66029617 -84753936 + AT_rich Low_complexity Low_complexity 1 42 0 180 0 0 0 chr11 66029654 66029674 -84753879 + (T)n Simple_repeat Simple_repeat 1 20 0 36 0 0 0 chr11 66029693 66029729 -84753824 + GC_rich Low_complexity Low_complexity 1 36 0 29 0 0 0 chr11 66029779 66029808 -84753745 + AT_rich Low_complexity Low_complexity 1 29 0 252 236 0 0 chr11 66030225 66030280 -84753273 + L2 LINE L2 3259 3313 0 666 127 0 42 chr11 66031683 66031801 -84751752 - LTR19A LTR ERV1 -10 476 364 597 71 0 12 chr11 66031823 66031907 -84751646 - AluSq SINE Alu -228 84 2 1415 143 85 3 chr11 66031908 66032228 -84751325 - LTR19A LTR ERV1 -106 380 1 2148 124 3 0 chr11 66032278 66032603 -84750950 + AluSx SINE Alu 1 312 0 1322 175 9 18 chr11 66032673 66032896 -84750657 - AluJo SINE Alu -91 221 1 378 170 190 40 chr11 66033018 66033118 -84750435 - MIR SINE MIR -33 229 115 626 93 10 0 chr11 66033138 66033235 -84750318 - AluY SINE Alu 0 311 214 2359 91 10 0 chr11 66033367 66033664 -84749889 - AluSp SINE Alu -13 300 1 305 161 0 0 chr11 66033664 66033720 -84749833 - L1MDa LINE L1 -4616 1924 1869 2144 106 0 40 chr11 66033721 66034042 -84749511 - AluSc SINE Alu -1 308 1 272 286 182 0 chr11 66034064 66034267 -84749286 - L1M4 LINE L1 -1163 4983 4744 597 205 0 0 chr11 66034275 66034397 -84749156 - FLAM_C SINE Alu 0 143 22 2318 96 3 3 chr11 66034498 66034799 -84748754 - AluSg SINE Alu -9 301 1 236 229 66 0 chr11 66034836 66034897 -84748656 + MER5A DNA MER1_type 52 116 -73 2122 121 7 23 chr11 66034910 66035216 -84748337 - AluSx SINE Alu -11 301 1 1348 158 3 125 chr11 66035222 66035551 -84748002 - AluSx SINE Alu -23 289 1 1734 117 128 4 chr11 66037826 66038099 -84745454 - AluSg1 SINE Alu -2 307 1 2408 79 7 0 chr11 66038111 66038402 -84745151 - AluSg SINE Alu -17 293 1 2012 137 3 7 chr11 66038407 66038707 -84744846 - AluSp SINE Alu -14 299 1 334 255 110 76 chr11 66038749 66039023 -84744530 - L2 LINE L2 -212 3060 2787 2668 52 0 0 chr11 66039028 66039335 -84744218 - AluY SINE Alu -4 307 1 319 280 139 14 chr11 66039343 66039575 -84743978 - L1MC/D LINE L1 -580 5582 5344 2084 98 10 52 chr11 66039577 66039882 -84743671 - AluSg SINE Alu -18 292 1 2253 95 0 33 chr11 66039933 66040269 -84743284 - AluSc SINE Alu 0 309 1 229 301 96 0 chr11 66040328 66040494 -84743059 - L1MC/D LINE L1 -1221 4925 4744 629 197 0 0 chr11 66040502 66040624 -84742929 - FLAM_C SINE Alu 0 143 22 207 0 0 0 chr11 66040624 66040647 -84742906 + (TAA)n Simple_repeat Simple_repeat 1 23 0 2045 100 3 31 chr11 66040647 66040971 -84742582 - AluSx SINE Alu 0 316 1 1808 223 136 43 chr11 66040971 66041617 -84741936 - L1MEc LINE L1 -5652 744 39 4063 125 1 25 chr11 66041797 66042447 -84741106 + MER41B LTR ERV1 1 635 0 842 150 8 0 chr11 66042447 66042574 -84740979 + AluJb SINE Alu 167 294 -18 2208 96 3 45 chr11 66042984 66043298 -84740255 + AluSg SINE Alu 1 301 -9 653 304 93 14 chr11 66043304 66043410 -84740143 + L1MEc LINE L1 100 196 -6200 525 103 0 0 chr11 66043410 66043488 -84740065 + MADE1 DNA Mariner 1 78 -2 653 304 93 14 chr11 66043488 66043661 -84739892 + L1MEc LINE L1 196 401 -5995 * 3404 182 67 36 chr11 66043657 66044204 -84739349 + L1ME2 LINE L1 5262 5791 -373 2419 79 0 0 chr11 66044204 66044496 -84739057 + AluSc SINE Alu 1 292 -17 3404 182 67 36 chr11 66044496 66044748 -84738805 + L1ME2 LINE L1 5791 6093 -71 2086 112 0 0 chr11 66044748 66045025 -84738528 + AluSx SINE Alu 21 297 -15 3404 182 67 36 chr11 66045025 66045091 -84738462 + L1ME2 LINE L1 6093 6155 -9 180 0 0 0 chr11 66045377 66045397 -84738156 + (A)n Simple_repeat Simple_repeat 1 20 0 1576 157 65 8 chr11 66045826 66046087 -84737466 + AluJo SINE Alu 1 276 -36 2368 109 0 0 chr11 66046099 66046411 -84737142 - AluSx SINE Alu 0 312 1 191 354 24 0 chr11 66046911 66046993 -84736560 - L2 LINE L2 -2531 783 700 2171 93 7 42 chr11 66047024 66047334 -84736219 + AluSg SINE Alu 1 299 -11 236 229 66 0 chr11 66047347 66047408 -84736145 - MER5A DNA MER1_type -73 116 52 2330 92 3 19 chr11 66047445 66047759 -84735794 + AluSg SINE Alu 1 309 -1 292 254 30 0 chr11 66048613 66048680 -84734873 + MIR SINE MIR 74 142 -66 1437 143 4 13 chr11 66048860 66049091 -84734462 - AluSg/x SINE Alu -16 296 68 253 296 43 52 chr11 66050369 66050484 -84733069 + MIR SINE MIR 32 145 -63 252 0 0 0 chr11 66051184 66051212 -84732341 + (T)n Simple_repeat Simple_repeat 1 28 0 956 132 7 0 chr11 66051476 66051612 -84731941 - AluSg/x SINE Alu -41 269 133 2355 91 3 0 chr11 66051612 66051908 -84731645 - AluSx SINE Alu -15 297 1 184 361 14 0 chr11 66052489 66052561 -84730992 + MIR SINE MIR 53 125 -83 211 274 16 16 chr11 66052717 66052779 -84730774 - L2 LINE L2 -94 3219 3158 2282 122 3 0 chr11 66052785 66053096 -84730457 + AluSx SINE Alu 1 312 0 1456 180 6 79 chr11 66053201 66053377 -84730176 - AluJb SINE Alu -19 293 149 1604 158 30 59 chr11 66053377 66053681 -84729872 - AluJb SINE Alu -17 295 1 1456 180 6 79 chr11 66053681 66053820 -84729733 - AluJb SINE Alu -163 149 1 488 295 223 15 chr11 66053847 66054179 -84729374 - L2 LINE L2 0 3313 2913 2314 94 17 7 chr11 66054203 66054501 -84729052 + AluSx SINE Alu 1 301 -11 1739 186 0 14 chr11 66054583 66054878 -84728675 - AluJo SINE Alu -21 291 1 225 297 63 0 chr11 66055699 66055810 -84727743 - MIR3 SINE MIR -47 161 44 571 335 114 3 chr11 66055995 66056320 -84727233 - L2 LINE L2 -2 3311 2951 714 270 173 42 chr11 66056502 66056976 -84726577 - MER77 LTR ERV1 -4 601 66 352 237 254 12 chr11 66057017 66057190 -84726363 - L2 LINE L2 -549 2765 2551 2310 55 48 7 chr11 66057213 66057506 -84726047 - AluY SINE Alu -6 305 1 2167 107 7 0 chr11 66057641 66057930 -84725623 + AluSq SINE Alu 1 291 -22 1296 233 7 7 chr11 66058453 66058745 -84724808 + AluSx SINE Alu 11 302 -10 2014 177 61 39 chr11 66058750 66059242 -84724311 + MLT1D LTR MaLR 3 505 0 1904 161 10 0 chr11 66059266 66059571 -84723982 + AluJb SINE Alu 1 308 -4 26 50 0 0 chr11 66059697 66059737 -84723816 + AT_rich Low_complexity Low_complexity 1 40 0 2569 74 0 0 chr11 66059737 66060046 -84723507 - AluY SINE Alu -2 309 1 1603 191 0 0 chr11 66060395 66060667 -84722886 + AluJo SINE Alu 23 294 -18 226 265 112 31 chr11 66060679 66060777 -84722776 + MER91A DNA MER1_type 90 195 -1 2296 102 13 0 chr11 66060800 66061103 -84722450 - AluSg SINE Alu -3 307 1 590 139 0 0 chr11 66061111 66061212 -84722341 - AluSg/x SINE Alu -2 310 210 1373 273 114 8 chr11 66061213 66061677 -84721876 - L2 LINE L2 -847 2467 1945 2041 79 97 0 chr11 66061677 66061944 -84721609 + AluSg SINE Alu 1 293 -17 1373 273 114 8 chr11 66061944 66061978 -84721575 - L2 LINE L2 -1369 1945 1916 270 247 74 12 chr11 66062057 66062138 -84721415 + MER5A DNA MER1_type 10 95 -94 1108 198 13 55 chr11 66062138 66062376 -84721177 - AluJo SINE Alu -28 284 57 392 336 20 17 chr11 66062556 66062848 -84720705 + AluJo SINE Alu 10 302 0 2178 107 7 7 chr11 66062880 66063180 -84720373 - AluSx SINE Alu -12 300 1 249 307 13 0 chr11 66063181 66063256 -84720297 - L2 LINE L2 -10 3262 3187 300 335 96 50 chr11 66063654 66064018 -84719535 - L2 LINE L2 -50 3222 2842 2126 115 10 19 chr11 66064214 66064528 -84719025 - AluSx SINE Alu -1 311 1 1007 88 0 0 chr11 66064639 66064764 -84718789 + AluSc SINE Alu 7 131 -178 2620 55 0 3 chr11 66064766 66065075 -84718478 + AluY SINE Alu 1 308 -3 23 0 0 0 chr11 66065448 66065471 -84718082 + GC_rich Low_complexity Low_complexity 1 23 0 252 0 0 0 chr11 66065595 66065623 -84717930 + (A)n Simple_repeat Simple_repeat 1 28 0 934 214 82 52 chr11 66065646 66066048 -84717505 - MER96B DNA MER1_type -3 414 1 193 362 9 9 chr11 66066059 66066164 -84717389 + MIR SINE MIR 47 151 -111 2215 116 0 0 chr11 66066216 66066529 -84717024 - AluSx SINE Alu 0 313 1 351 306 42 42 chr11 66067116 66067260 -84716293 - MIR3 SINE MIR -62 146 3 539 263 77 65 chr11 66068230 66068477 -84715076 - MIR SINE MIR -1 261 12 370 216 148 0 chr11 66068695 66068783 -84714770 + L2 LINE L2 3210 3310 -3 282 232 29 14 chr11 66071813 66071882 -84711671 + GA-rich Low_complexity Low_complexity 1 70 0 220 200 0 0 chr11 66073113 66073153 -84710400 - MIR SINE MIR -112 150 111 371 299 36 24 chr11 66074455 66074622 -84708931 + MIR SINE MIR 41 209 -53 303 266 26 88 chr11 66074662 66074854 -84708699 - AluJb SINE Alu -3 299 120 617 125 21 0 chr11 66074964 66075060 -84708493 - AluS SINE Alu -213 99 2 2464 61 3 3 chr11 66075086 66075383 -84708170 + AluSq SINE Alu 4 300 -13 1318 250 29 74 chr11 66075390 66075615 -84707938 - L2 LINE L2 -540 2774 2540 2347 122 5 19 chr11 66075615 66075984 -84707569 - THE1B LTR MaLR 0 364 1 1318 250 29 74 chr11 66075984 66076314 -84707239 - L2 LINE L2 -774 2540 2244 260 368 0 0 chr11 66076781 66076868 -84706685 - MIR SINE MIR -91 117 31 1656 136 121 0 chr11 66077279 66077543 -84706010 + 7SLRNA srpRNA srpRNA 20 315 -5 420 224 9 0 chr11 66077629 66077736 -84705817 + L1M4 LINE L1 4220 4327 -1819 2092 109 26 20 chr11 66077737 66078041 -84705512 + AluSx SINE Alu 1 306 -6 688 292 22 26 chr11 66078088 66078456 -84705097 + L1ME LINE L1 1367 1888 -4647 * 3386 207 35 19 chr11 66078445 66078968 -84704585 + L1ME LINE L1 3709 4255 -2127 748 177 0 0 chr11 66078968 66079092 -84704461 + FLAM_A SINE Alu 1 124 -9 3386 207 35 19 chr11 66079092 66079475 -84704078 + L1ME LINE L1 4255 4630 -1752 490 316 4 62 chr11 66079475 66079700 -84703853 + MER93a LTR ERV1 1 212 -190 866 167 0 0 chr11 66079705 66079837 -84703716 + AluJb SINE Alu 1 132 -180 405 224 17 17 chr11 66079861 66080026 -84703527 + MER57A LTR ERV1 238 403 0 3430 217 46 16 chr11 66080026 66081088 -84702465 + L1ME LINE L1 4627 5729 -673 2257 125 0 7 chr11 66081088 66081392 -84702161 + AluSx SINE Alu 1 302 -10 3430 217 46 16 chr11 66081392 66081492 -84702061 + L1ME LINE L1 5729 5825 -577 411 179 284 0 chr11 66081509 66081604 -84701949 + FLAM_C SINE Alu 6 127 -16 758 182 0 0 chr11 66081621 66081753 -84701800 - FLAM_C SINE Alu 0 133 2 371 127 14 14 chr11 66081754 66081825 -84701728 + L1ME LINE L1 5811 5881 -521 621 198 0 0 chr11 66081899 66082020 -84701533 + L1MA10 LINE L1 6168 6288 -46 1070 167 0 6 chr11 66082026 66082200 -84701353 + AluJo SINE Alu 88 260 -52 377 268 92 0 chr11 66082578 66082720 -84700833 - Charlie8 DNA MER1_type -2197 220 66 1980 107 19 57 chr11 66082720 66082803 -84700750 + AluSq SINE Alu 1 86 -227 8470 48 11 0 chr11 66082803 66083761 -84699792 - LTR5 LTR ERVK 0 969 1 1980 107 19 57 chr11 66083761 66083994 -84699559 + AluSq SINE Alu 86 305 -8 1393 157 39 99 chr11 66084122 66084504 -84699049 - LTR5 LTR ERVK 0 969 611 2613 52 0 13 chr11 66084504 66084814 -84698739 + AluY SINE Alu 1 306 -5 2186 118 3 3 chr11 66085570 66085867 -84697686 + AluSq SINE Alu 1 297 -16 1406 187 0 17 chr11 66086094 66086329 -84697224 + AluJo SINE Alu 1 231 -81 1269 183 32 8 chr11 66086334 66086580 -84696973 - MER50 LTR ERV1 -49 685 434 * 1851 162 13 0 chr11 66086570 66086884 -84696669 - MER50 LTR ERV1 -416 318 1 384 149 27 40 chr11 66086884 66086947 -84696606 + AluJo SINE Alu 231 292 -10 1084 138 42 11 chr11 66087012 66087201 -84696352 + THE1B LTR MaLR 1 195 -169 269 76 10 69 chr11 66087198 66087252 -84696301 - FLAM_A SINE Alu -8 125 85 * 198 0 0 0 chr11 66087352 66087374 -84696179 + (A)n Simple_repeat Simple_repeat 1 22 0 1896 99 4 0 chr11 66087949 66088192 -84695361 - AluSq SINE Alu -16 297 54 1935 150 3 26 chr11 66088216 66088522 -84695031 - AluSx SINE Alu -13 299 1 540 253 11 40 chr11 66088528 66088702 -84694851 + U2 snRNA snRNA 15 183 -5 2345 104 13 0 chr11 66088811 66089118 -84694435 - AluSq SINE Alu -2 311 1 2076 122 0 10 chr11 66089450 66089744 -84693809 + AluSx SINE Alu 1 291 -21 2474 82 3 13 chr11 66089849 66089984 -84693569 + AluSx SINE Alu 1 136 -176 2489 73 0 10 chr11 66089984 66090284 -84693269 + AluY SINE Alu 1 297 -14 2474 82 3 13 chr11 66090284 66090463 -84693090 + AluSx SINE Alu 136 312 0 21 0 0 0 chr11 66090524 66090545 -84693008 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 66090596 66090620 -84692933 + AT_rich Low_complexity Low_complexity 1 24 0 222 91 0 0 chr11 66090875 66090908 -84692645 + (TG)n Simple_repeat Simple_repeat 2 34 0 291 297 24 17 chr11 66091517 66091807 -84691746 + L1M4 LINE L1 3106 3397 -2749 849 202 0 40 chr11 66091821 66092044 -84691509 - L1MB8 LINE L1 0 6178 5965 256 130 0 0 chr11 66092044 66092090 -84691463 - AluSp/q SINE Alu -9 294 249 2003 141 7 23 chr11 66092825 66093130 -84690423 - AluSx SINE Alu -12 300 1 224 271 0 0 chr11 66093130 66093189 -84690364 + MIR SINE MIR 42 100 -108 890 165 18 3 chr11 66093378 66093616 -84689937 - AluJb SINE Alu 0 312 2 1830 91 0 0 chr11 66093824 66094044 -84689509 + AluSq SINE Alu 1 220 -93 1206 136 0 84 chr11 66094192 66094406 -84689147 + AluJb SINE Alu 1 196 -116 776 225 0 42 chr11 66094528 66094764 -84688789 + L1MB8 LINE L1 5953 6178 0 283 293 46 14 chr11 66094778 66095058 -84688495 - L1MDa LINE L1 -2749 3791 3503 332 281 38 76 chr11 66095127 66095284 -84688269 - L1MDa LINE L1 -3774 2766 2623 2117 88 7 26 chr11 66095284 66095591 -84687962 - AluY SINE Alu -10 301 1 332 281 38 76 chr11 66095591 66095765 -84687788 - L1MDa LINE L1 -3917 2623 2444 2093 139 7 0 chr11 66096555 66096849 -84686704 - AluSx SINE Alu -16 296 1 1380 181 4 25 chr11 66096884 66097121 -84686432 + AluSx SINE Alu 1 232 -80 392 284 163 55 chr11 66097417 66097515 -84686038 + L1ME LINE L1 5136 5222 -948 2039 153 0 0 chr11 66097515 66097816 -84685737 - AluJb SINE Alu -6 306 6 392 284 163 55 chr11 66097816 66097955 -84685598 + L1ME LINE L1 5222 5345 -825 2472 94 0 0 chr11 66097955 66098263 -84685290 + AluSc SINE Alu 1 308 -1 392 284 163 55 chr11 66098263 66098429 -84685124 + L1ME LINE L1 5345 5492 -678 354 61 0 0 chr11 66098429 66098478 -84685075 + (CA)n Simple_repeat Simple_repeat 1 49 0 392 284 163 55 chr11 66098478 66098639 -84684914 + L1ME LINE L1 5492 5781 -389 655 291 41 22 chr11 66098783 66099054 -84684499 - MLT1L LTR MaLR -9 606 331 2326 93 10 0 chr11 66099245 66099536 -84684017 - AluSq SINE Alu -19 294 1 570 175 0 10 chr11 66099977 66100080 -84683473 - MLT1D LTR MaLR -2 503 402 1073 96 0 0 chr11 66100089 66100224 -84683329 + AluSq/x SINE Alu 1 135 -178 2115 130 23 0 chr11 66100224 66100525 -84683028 + AluSx SINE Alu 1 308 -4 1163 174 0 15 chr11 66100640 66100835 -84682718 - AluJb SINE Alu -118 194 3 2509 57 3 3 chr11 66100864 66101162 -84682391 + AluY SINE Alu 2 299 -12 1582 100 0 46 chr11 66101163 66101404 -84682149 + AluSc SINE Alu 65 294 -15 226 184 0 0 chr11 66101404 66101442 -84682111 - Alu SINE Alu -179 123 86 944 179 54 71 chr11 66101442 66101666 -84681887 - AluJo SINE Alu -92 220 1 948 175 5 40 chr11 66101684 66101884 -84681669 - AluJo SINE Alu 0 312 120 371 294 34 64 chr11 66101999 66102264 -84681289 - L1M4 LINE L1 -1314 4832 4576 2412 103 0 0 chr11 66102264 66102565 -84680988 + AluSx SINE Alu 1 301 -11 792 150 0 0 chr11 66102571 66102704 -84680849 + L1PA15 LINE L1 6032 6164 -1 2649 154 57 4 chr11 66102704 66103210 -84680343 + L1MB7 LINE L1 5443 5975 -209 2270 83 7 0 chr11 66103210 66103488 -84680065 + AluSq SINE Alu 1 280 -33 207 0 0 0 chr11 66103597 66103620 -84679933 + (T)n Simple_repeat Simple_repeat 1 23 0 1240 162 33 17 chr11 66103741 66103982 -84679571 - MLT1D LTR MaLR -260 245 1 2177 127 0 7 chr11 66104275 66104574 -84678979 + AluSx SINE Alu 1 297 -15 1085 222 21 4 chr11 66105843 66106077 -84677476 + MIR SINE MIR 8 245 -17 900 82 7 22 chr11 66106325 66106460 -84677093 - FLAM_C SINE Alu 0 133 1 435 154 26 0 chr11 66107786 66107864 -84675689 - FLAM_A SINE Alu -10 132 53 471 282 0 0 chr11 66107920 66108030 -84675523 + MIR SINE MIR 35 144 -64 235 265 78 29 chr11 66108055 66108157 -84675396 + MER5A DNA MER1_type 38 144 -45 1055 236 4 4 chr11 66108173 66108402 -84675151 + MIR SINE MIR 13 241 -21 1530 105 0 24 chr11 66108555 66108818 -84674735 - AluSc SINE Alu 0 335 78 2634 43 3 0 chr11 66108836 66109135 -84674418 - AluY SINE Alu -11 300 1 589 108 0 0 chr11 66109135 66109218 -84674335 - AluSc SINE Alu -225 84 2 188 309 44 0 chr11 66111905 66111973 -84671580 + MIR3 SINE MIR 90 160 -48 217 270 0 16 chr11 66112889 66112952 -84670601 + MIR SINE MIR 87 148 -60 2603 54 0 0 chr11 66113294 66113590 -84669963 - AluY SINE Alu -15 296 1 23126 44 0 0 chr11 66115424 66119213 -84664340 + L1PA5 LINE L1 2331 6154 0 537 206 131 80 chr11 66119220 66119395 -84664158 + MLT1J LTR MaLR 2 185 -326 284 284 121 17 chr11 66119956 66120072 -84663481 - L2 LINE L2 -3 3310 3183 2042 138 7 3 chr11 66120125 66120421 -84663132 + AluSx SINE Alu 1 297 -15 576 342 30 4 chr11 66120481 66120712 -84662841 - L2 LINE L2 -565 2749 2513 274 161 18 18 chr11 66120712 66120768 -84662785 - MLT1A1 LTR MaLR -1 364 309 1259 233 22 13 chr11 66120875 66121192 -84662361 - MLT1A1 LTR MaLR -44 321 2 2531 68 0 0 chr11 66121306 66121613 -84661940 + AluY SINE Alu 1 307 -4 1314 168 188 0 chr11 66122246 66122544 -84661009 + MLT1C LTR MaLR 1 354 -113 742 181 0 15 chr11 66123205 66123338 -84660215 + MLT1C LTR MaLR 337 467 0 1820 167 0 20 chr11 66123731 66124063 -84659490 - AluJb SINE Alu 0 312 5 2009 80 3 20 chr11 66124071 66124349 -84659204 - L1MA1 LINE L1 0 6302 6028 1837 154 45 25 chr11 66124349 66124706 -84658847 - THE1B LTR MaLR 0 364 1 2009 80 3 20 chr11 66124706 66124729 -84658824 - L1MA1 LINE L1 -274 6028 6006 1099 258 116 63 chr11 66124824 66125300 -84658253 + MLT1F LTR MaLR 1 501 -41 3360 122 19 6 chr11 66125574 66126115 -84657438 - L1PA13 LINE L1 -1 6162 5615 272 283 115 26 chr11 66126198 66126311 -84657242 + MLT1D LTR MaLR 1 123 -382 5212 95 7 3 chr11 66126311 66127076 -84656477 + L1PB1 LINE L1 5381 6148 -3 31 26 0 0 chr11 66127077 66127115 -84656438 + AT_rich Low_complexity Low_complexity 1 38 0 333 262 110 72 chr11 66127116 66127379 -84656174 + MLT1D LTR MaLR 107 379 -126 408 55 0 0 chr11 66127399 66127454 -84656099 + (CCCTAA)n Simple_repeat Simple_repeat 4 58 0 3144 80 0 2 chr11 66127543 66127958 -84655595 + THE1B-int LTR MaLR 1167 1580 0 2387 102 19 16 chr11 66127958 66128321 -84655232 + THE1B LTR MaLR 1 364 0 2172 128 3 0 chr11 66128458 66128755 -84654798 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr11 66129029 66129050 -84654503 + AT_rich Low_complexity Low_complexity 1 21 0 522 250 133 20 chr11 66129102 66129298 -84654255 - L1MC4 LINE L1 -5 8037 7820 1631 185 14 76 chr11 66129389 66129463 -84654090 + MSTD LTR MaLR 1 78 -318 2363 103 0 0 chr11 66129463 66129765 -84653788 + AluSq SINE Alu 1 302 -11 1631 185 14 76 chr11 66129765 66130112 -84653441 + MSTD LTR MaLR 78 396 0 389 336 12 42 chr11 66130239 66130480 -84653073 - L2 LINE L2 -164 3149 2916 581 214 59 21 chr11 66130574 66130761 -84652792 - L2 LINE L2 -569 2745 2552 463 242 0 0 chr11 66130748 66130847 -84652706 - MIR SINE MIR -96 166 68 * 2063 143 51 5 chr11 66130891 66131304 -84652249 - L1MB4 LINE L1 -1 6179 5748 206 247 233 0 chr11 66131803 66131876 -84651677 - MIR SINE MIR -120 142 53 * 742 303 155 7 chr11 66131866 66132278 -84651275 - L3 LINE CR1 -317 1260 788 336 212 192 0 chr11 66132272 66132371 -84651182 - L2 LINE L2 -1 3312 3195 * 485 354 29 33 chr11 66132388 66132628 -84650925 - MIR SINE MIR -5 257 19 182 237 26 53 chr11 66133355 66133431 -84650122 - MIR SINE MIR -80 182 109 363 262 186 6 chr11 66133712 66133884 -84649669 - L2 LINE L2 -91 3222 3020 184 260 80 0 chr11 66134131 66134181 -84649372 + L2 LINE L2 3218 3271 -1 688 228 46 79 chr11 66134335 66134576 -84648977 + MER102a DNA MER1_type 98 330 0 418 247 153 35 chr11 66135189 66135359 -84648194 - MIR SINE MIR -27 235 46 2322 87 3 7 chr11 66135365 66135664 -84647889 + AluSp SINE Alu 1 298 -15 285 183 0 0 chr11 66136691 66136751 -84646802 + (TGGA)n Simple_repeat Simple_repeat 1 60 0 349 195 26 0 chr11 66136959 66137036 -84646517 + MIR3 SINE MIR 106 184 -24 258 284 27 0 chr11 66137122 66137196 -84646357 + GA-rich Low_complexity Low_complexity 2 77 0 229 194 60 45 chr11 66137636 66137703 -84645850 - MIR SINE MIR -119 143 76 257 231 46 0 chr11 66138865 66138930 -84644623 - MIR SINE MIR -110 152 85 206 267 178 0 chr11 66139164 66139265 -84644288 - MIR SINE MIR -27 235 117 233 298 181 0 chr11 66140009 66140103 -84643450 - L2 LINE L2 -2 3270 3160 818 264 59 0 chr11 66140196 66140416 -84643137 + MIR SINE MIR 20 252 -10 306 312 69 67 chr11 66140503 66140984 -84642569 + L2 LINE L2 2381 2862 -452 2174 119 3 16 chr11 66141014 66141326 -84642227 - AluSg SINE Alu 0 310 3 307 266 121 8 chr11 66141439 66141563 -84641990 + MIR SINE MIR 60 197 -65 198 71 0 0 chr11 66141652 66141680 -84641873 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 25 0 0 0 chr11 66141720 66141745 -84641808 + AT_rich Low_complexity Low_complexity 1 25 0 349 287 102 0 chr11 66143864 66143972 -84639581 - L2 LINE L2 -9 3263 3145 333 350 25 41 chr11 66144456 66144653 -84638900 - MIR SINE MIR -12 250 57 194 178 96 27 chr11 66144696 66144769 -84638784 - L2 LINE L2 -181 3091 3014 468 256 24 8 chr11 66144939 66145064 -84638489 - MIR SINE MIR -111 151 25 981 232 9 21 chr11 66145083 66145330 -84638223 - MIR SINE MIR -5 257 15 199 308 0 31 chr11 66145356 66145421 -84638132 + L2 LINE L2 3185 3247 -25 405 198 104 21 chr11 66145564 66145660 -84637893 + L2 LINE L2 3210 3313 0 366 65 0 0 chr11 66145865 66145911 -84637642 + Alu SINE Alu 1 46 -257 180 298 73 60 chr11 66146408 66146559 -84636994 - MIR SINE MIR -90 172 20 487 279 81 11 chr11 66146648 66146870 -84636683 - MIR SINE MIR -17 245 5 497 312 51 6 chr11 66147332 66147489 -84636064 + MIR SINE MIR 16 179 -83 2125 98 0 4 chr11 66147676 66147950 -84635603 + AluSx SINE Alu 1 273 -39 2223 129 0 3 chr11 66148396 66148706 -84634847 + AluSg SINE Alu 1 309 -1 16793 82 2 0 chr11 66148832 66151015 -84632538 - L1P LINE L1 -3852 2294 107 908 101 8 0 chr11 66151115 66151234 -84632319 - AluSq/x SINE Alu -193 120 1 1502 202 17 3 chr11 66151241 66151528 -84632025 - AluJb SINE Alu -21 291 1 811 259 25 15 chr11 66151768 66151965 -84631588 + MIR SINE MIR 21 219 -43 1264 171 23 18 chr11 66152083 66152300 -84631253 + MER20 DNA MER1_type 1 218 -1 1221 119 51 6 chr11 66152318 66152494 -84631059 + AluSg SINE Alu 1 184 -126 12737 50 7 2 chr11 66152594 66154858 -84628695 + L1PA4 LINE L1 3888 6152 -3 7455 131 33 3 chr11 66154866 66156000 -84627553 + THE1B-int LTR MaLR 414 1580 0 1461 167 110 4 chr11 66156014 66156277 -84627276 + THE1B LTR MaLR 74 364 0 22 0 0 0 chr11 66156948 66156970 -84626583 + AT_rich Low_complexity Low_complexity 1 22 0 261 291 91 9 chr11 66157016 66157126 -84626427 - L2 LINE L2 0 3313 3195 251 256 99 73 chr11 66157250 66157441 -84626112 - L2 LINE L2 0 3313 3118 335 270 87 121 chr11 66157640 66158021 -84625532 - MLT1-int LTR MaLR -6 1365 998 283 312 58 53 chr11 66158170 66158359 -84625194 - MLT1-int LTR MaLR -490 881 692 4356 135 16 6 chr11 66158545 66159235 -84624318 - L1MA3 LINE L1 -1 6304 5608 770 150 0 0 chr11 66159471 66159603 -84623950 - L1M1 LINE L1 -649 5654 5523 * 8701 182 26 8 chr11 66159601 66161300 -84622253 - L1M1 LINE L1 -864 5282 3553 760 122 35 0 chr11 66161300 66161415 -84622138 + FLAM_C SINE Alu 25 143 0 8291 20 0 0 chr11 66161545 66163027 -84620526 + L1PA3 LINE L1 4671 6152 -3 4379 100 3 0 chr11 66163075 66163644 -84619909 + THE1B-int LTR MaLR 1010 1580 0 2147 128 29 84 chr11 66163646 66164029 -84619524 + THE1B LTR MaLR 3 364 0 1518 222 7 3 chr11 66164038 66164344 -84619209 + AluJo SINE Alu 1 307 -5 4399 92 26 3 chr11 66164399 66164984 -84618569 + L1PA10 LINE L1 5564 6161 -7 11622 192 99 24 chr11 66165000 66165377 -84618176 + L1 LINE L1 2386 2733 -3423 1614 178 17 13 chr11 66165377 66165675 -84617878 + AluJo SINE Alu 1 299 -13 11622 192 99 24 chr11 66165675 66168109 -84615444 + L1 LINE L1 2733 5415 -741 2456 187 17 7 chr11 66168109 66168531 -84615022 - MSTB LTR MaLR 0 426 1 4581 176 29 4 chr11 66168531 66169331 -84614222 - MSTB-int LTR MaLR 0 1651 832 777 136 0 0 chr11 66169362 66169472 -84614081 + L1P LINE L1 4058 4167 -1979 251 244 98 112 chr11 66169739 66169944 -84613609 + L1MC4 LINE L1 6765 6966 -1076 2593 181 4 0 chr11 66169975 66170440 -84613113 + L1PA14 LINE L1 4058 4524 -1622 6396 77 18 55 chr11 66171293 66172976 -84610577 + L1PA14 LINE L1 4504 6158 -3 21 57 0 0 chr11 66172979 66173014 -84610539 + AT_rich Low_complexity Low_complexity 1 35 0 17419 199 39 89 chr11 66174737 66176590 -84606963 - L1PA15 LINE L1 -21 6144 4200 2083 112 0 14 chr11 66176590 66176884 -84606669 + AluY SINE Alu 1 290 -21 17419 199 39 89 chr11 66176884 66178837 -84604716 - L1PA15 LINE L1 -1965 4200 2151 2656 51 0 0 chr11 66178837 66179148 -84604405 - AluY SINE Alu 0 311 1 17419 199 39 89 chr11 66179148 66181813 -84601740 - L1PA15 LINE L1 -4014 2151 3 270 242 108 67 chr11 66181813 66181863 -84601690 - L1M4 LINE L1 -2995 3151 3105 222 37 0 0 chr11 66181863 66181890 -84601663 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 306 0 0 0 chr11 66181889 66181923 -84601630 + (TG)n Simple_repeat Simple_repeat 1 34 0 270 242 108 67 chr11 66181890 66182066 -84601487 - L1M4 LINE L1 -3041 3105 2950 * 3846 170 16 8 chr11 66182044 66182337 -84601216 - L1PA15 LINE L1 -3 6288 5999 598 120 11 0 chr11 66182337 66182429 -84601124 - L1PA15 LINE L1 -7 6158 6066 3846 170 16 8 chr11 66182429 66182971 -84600582 - L1PA15 LINE L1 -292 5999 5434 188 178 0 22 chr11 66183153 66183198 -84600355 + (CAT)n Simple_repeat Simple_repeat 2 45 0 25 83 0 0 chr11 66183733 66183793 -84599760 + AT_rich Low_complexity Low_complexity 1 60 0 180 239 33 54 chr11 66186428 66186520 -84597033 - L3 LINE CR1 -29 1548 1459 204 386 33 13 chr11 66187587 66187740 -84595813 - MIR SINE MIR -105 157 2 2535 145 10 0 chr11 66189430 66189830 -84593723 + HSMAR2 DNA Mariner 3 406 -896 44425 43 1 3 chr11 66189836 66196010 -84587543 + L1PA3 LINE L1 2 6165 0 5514 116 16 63 chr11 66196010 66196027 -84587526 + HSMAR2 DNA Mariner 406 422 -880 2540 93 33 38 chr11 66196027 66196393 -84587160 + THE1B LTR MaLR 1 364 0 5514 116 16 63 chr11 66196393 66196792 -84586761 + HSMAR2 DNA Mariner 422 838 -464 2056 144 0 0 chr11 66196792 66197084 -84586469 - AluSg SINE Alu -18 292 1 5514 116 16 63 chr11 66197084 66197607 -84585946 + HSMAR2 DNA Mariner 838 1302 0 372 316 55 76 chr11 66197926 66198163 -84585390 + L1ME LINE L1 5318 5549 -572 1016 205 40 16 chr11 66198267 66198516 -84585037 - L1M4 LINE L1 -1924 4222 3968 1987 153 85 0 chr11 66198527 66198892 -84584661 - L1PA16 LINE L1 -3 6163 5768 505 186 28 62 chr11 66198892 66199032 -84584521 - MER39 LTR ERV1 -91 616 482 314 143 0 0 chr11 66199250 66199306 -84584247 - L1PB1 LINE L1 0 6151 6096 818 108 0 16 chr11 66199306 66199435 -84584118 + L1PB2 LINE L1 5962 6088 -63 * 2226 97 10 7 chr11 66199430 66199739 -84583814 - L1PA16 LINE L1 -384 5782 5473 2181 121 0 13 chr11 66199763 66200070 -84583483 + AluSx SINE Alu 1 303 -9 760 304 45 20 chr11 66200097 66200221 -84583332 - L1M4 LINE L1 -2268 3878 3759 1746 193 19 43 chr11 66200221 66200595 -84582958 - MLT1A1 LTR MaLR 0 365 1 760 304 45 20 chr11 66200595 66200828 -84582725 - L1M4 LINE L1 -2387 3759 3512 2734 214 106 10 chr11 66201000 66201700 -84581853 + Cheshire DNA MER1_type 1438 2204 -216 9902 36 0 0 chr11 66201747 66203646 -84579907 + L1PA3 LINE L1 4253 6151 -4 4267 106 5 0 chr11 66203695 66204263 -84579290 + THE1B-int LTR MaLR 1010 1580 0 2147 128 29 84 chr11 66204265 66204648 -84578905 + THE1B LTR MaLR 3 364 0 1591 212 7 3 chr11 66204657 66204964 -84578589 + AluJo SINE Alu 1 308 -4 189 0 0 0 chr11 66205088 66205109 -84578444 + (A)n Simple_repeat Simple_repeat 1 21 0 763 239 11 27 chr11 66205109 66205297 -84578256 + AluJb SINE Alu 120 304 -8 3207 198 46 12 chr11 66205301 66205783 -84577770 - L1M4 LINE L1 -2584 3562 3043 1813 157 19 29 chr11 66205783 66206095 -84577458 - AluSx SINE Alu 0 312 4 3207 198 46 12 chr11 66206095 66206379 -84577174 - L1M4 LINE L1 -3103 3043 2770 7118 69 12 29 chr11 66206381 66207389 -84576164 - L1PA8 LINE L1 -2 6170 5167 25 0 0 0 chr11 66207467 66207492 -84576061 + AT_rich Low_complexity Low_complexity 1 25 0 182 287 210 32 chr11 66207503 66207660 -84575893 - MIR SINE MIR -32 230 46 951 35 0 0 chr11 66207801 66207914 -84575639 + L1P3 LINE L1 5620 5732 -422 287 297 108 36 chr11 66208249 66208360 -84575193 + L2 LINE L2 3143 3261 -11 872 260 84 38 chr11 66208841 66209277 -84574276 - L1ME3 LINE L1 -67 6095 5543 7883 34 12 0 chr11 66209277 66210490 -84573063 + L1PA4 LINE L1 4924 6151 -4 872 260 84 38 chr11 66210490 66210621 -84572932 - L1ME3 LINE L1 -619 5543 5419 6405 115 15 15 chr11 66210621 66213792 -84569761 - L1PA13 LINE L1 0 6163 2939 261 0 0 0 chr11 66213792 66213821 -84569732 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 6405 115 15 15 chr11 66213821 66214395 -84569158 - L1PA13 LINE L1 -3224 2939 2367 21 36 0 0 chr11 66214421 66214449 -84569104 + GC_rich Low_complexity Low_complexity 1 28 0 467 76 0 63 chr11 66214554 66214633 -84568920 - AluSc SINE Alu -19 290 217 2504 56 3 10 chr11 66214644 66214950 -84568603 - AluY SINE Alu -7 304 1 384 276 48 9 chr11 66214950 66215055 -84568498 - MIR SINE MIR -111 151 43 245 250 156 0 chr11 66215056 66215120 -84568433 - MER58A DNA MER1_type -30 77 4 * 372 144 67 44 chr11 66215120 66215192 -84568361 - MER96B DNA MER1_type? -292 125 52 2146 135 0 0 chr11 66215599 66215903 -84567650 + AluSx SINE Alu 1 304 -8 2312 108 0 0 chr11 66215907 66216204 -84567349 + AluSx SINE Alu 1 297 -15 476 131 0 0 chr11 66216204 66216288 -84567265 + L1M4 LINE L1 4325 4408 -1738 * 919 127 25 19 chr11 66216278 66216436 -84567117 + L1MC2 LINE L1 5944 6102 -242 193 183 117 50 chr11 66216437 66216497 -84567056 - MIR SINE MIR -85 177 114 345 24 0 0 chr11 66216541 66216583 -84566970 + (CA)n Simple_repeat Simple_repeat 2 43 0 2406 75 0 0 chr11 66218030 66218323 -84565230 + AluY SINE Alu 1 293 -18 1939 102 3 56 chr11 66218572 66218876 -84564677 - AluSg SINE Alu -22 288 1 875 142 117 0 chr11 66218876 66219038 -84564515 - MER96B DNA MER1_type? -236 181 1 1342 196 176 154 chr11 66219221 66220028 -84563525 - L2 LINE L2 -351 2963 2130 2356 88 0 3 chr11 66220028 66220322 -84563231 + AluSx SINE Alu 4 296 -16 1342 196 176 154 chr11 66220322 66220474 -84563079 - L2 LINE L2 -1184 2130 1983 219 114 227 0 chr11 66220633 66220677 -84562876 + MIR SINE MIR 90 143 -65 339 212 35 44 chr11 66221735 66221848 -84561705 - MER103 DNA DNA -12 154 43 23 0 0 0 chr11 66221868 66221891 -84561662 + AT_rich Low_complexity Low_complexity 1 23 0 201 324 54 0 chr11 66221931 66222005 -84561548 - MIR3 SINE MIR -50 158 81 187 344 78 0 chr11 66222361 66222451 -84561102 + L2 LINE L2 3179 3275 -38 242 29 29 0 chr11 66222866 66222901 -84560652 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 886 238 69 0 chr11 66223426 66223649 -84559904 + MIR SINE MIR 23 261 -1 218 217 54 54 chr11 66223802 66223894 -84559659 + MIR SINE MIR 157 248 -14 379 164 0 6 chr11 66224338 66224414 -84559139 + MIR SINE MIR 46 119 -89 289 133 133 0 chr11 66225973 66226033 -84557520 + MIR SINE MIR 108 175 -87 2211 83 0 0 chr11 66226054 66226364 -84557189 + AluY SINE Alu 1 310 0 1960 77 0 23 chr11 66226376 66226636 -84556917 + AluSx SINE Alu 1 254 -58 333 0 0 0 chr11 66226744 66226781 -84556772 + (T)n Simple_repeat Simple_repeat 1 37 0 10678 101 63 21 chr11 66226781 66228412 -84555141 - L1P LINE L1 -3825 2321 623 632 136 0 0 chr11 66228410 66228498 -84555055 - L1P LINE L1 -6048 98 11 * 6512 195 34 11 chr11 66228501 66229984 -84553569 - L1PA13 LINE L1 -3312 3485 1977 43314 53 1 1 chr11 66229985 66236135 -84547418 + L1PA3 LINE L1 1 6155 0 17095 66 6 2 chr11 66236150 66239039 -84544514 + L1PA4 LINE L1 3254 6142 -13 3249 182 65 68 chr11 66239099 66239560 -84543993 - MER54B LTR ERVL 0 793 333 3202 60 8 8 chr11 66239560 66239959 -84543594 - L1PA7 LINE L1 0 6154 5756 3249 182 65 68 chr11 66239959 66240292 -84543261 - MER54B LTR ERVL -460 333 1 4987 183 58 64 chr11 66240301 66242488 -84541065 - L1MB1 LINE L1 0 6870 4711 1183 249 81 5 chr11 66242488 66242857 -84540696 - L1MB1 LINE L1 -4166 2683 2287 2605 149 27 45 chr11 66242876 66243010 -84540543 - L1MA4 LINE L1 -1 6299 6164 306 0 0 0 chr11 66243010 66243044 -84540509 + (TG)n Simple_repeat Simple_repeat 2 35 0 2605 149 27 45 chr11 66243044 66243424 -84540129 - L1MA4 LINE L1 -136 6164 5794 2800 111 5 9 chr11 66243526 66243967 -84539586 - L1P LINE L1 -2454 3692 3254 29413 112 12 44 chr11 66243982 66250401 -84533152 - L1PA3 LINE L1 0 6155 12 2666 137 16 1 chr11 66254789 66255498 -84528055 + L1MA2 LINE L1 4922 5638 -666 2361 128 31 14 chr11 66255503 66255861 -84527692 - THE1B LTR MaLR 0 364 1 8985 127 45 43 chr11 66255861 66257652 -84525901 - THE1B-int LTR MaLR 0 1651 1 2413 120 28 8 chr11 66257652 66258009 -84525544 - THE1B LTR MaLR 0 364 1 4010 94 10 7 chr11 66258011 66258595 -84524958 + L1MA2 LINE L1 5641 6226 -78 1573 107 8 0 chr11 66258595 66258827 -84524726 + L1MA2 LINE L1 6069 6304 0 23 33 0 0 chr11 66258834 66258864 -84524689 + AT_rich Low_complexity Low_complexity 1 30 0 11142 208 31 6 chr11 66258952 66259079 -84524474 + L1MA4A LINE L1 11 133 -7432 4461 130 6 30 chr11 66259079 66259787 -84523766 - LTR8 LTR ERV1 0 691 1 11142 208 31 6 chr11 66259787 66261850 -84521703 + L1MA4A LINE L1 133 2256 -5309 3268 93 15 0 chr11 66261851 66262312 -84521241 + L1MA1 LINE L1 5831 6298 -4 5022 165 45 41 chr11 66262326 66263059 -84520494 + L1MA4A LINE L1 6200 6929 -793 2283 113 0 0 chr11 66263059 66263360 -84520193 + AluSx SINE Alu 1 301 -11 5022 165 45 41 chr11 66263360 66264142 -84519411 + L1MA4A LINE L1 6929 7721 -1 7169 57 1 1 chr11 66264229 66265775 -84517778 + L1PA7 LINE L1 4594 6153 -1 277 292 23 15 chr11 66265775 66265905 -84517648 + L1ME2 LINE L1 6021 6151 -13 2430 73 3 0 chr11 66266115 66266403 -84517150 + AluSp SINE Alu 1 289 -24 266 256 65 36 chr11 66266482 66266650 -84516903 + L1M4 LINE L1 4644 4816 -1330 319 107 18 18 chr11 66266854 66266910 -84516643 - MLT2B3 LTR ERVL 0 520 465 231 154 15 46 chr11 66266911 66266976 -84516577 + (TA)n Simple_repeat Simple_repeat 2 64 0 2274 192 19 11 chr11 66266984 66267452 -84516101 - MLT2B3 LTR ERVL -50 504 1 473 285 179 8 chr11 66267507 66267753 -84515800 + LTR33A LTR ERVL 123 410 -113 549 326 151 14 chr11 66267852 66268546 -84515007 - L2 LINE L2 -1 3312 2519 469 280 254 34 chr11 66268559 66268604 -84514949 - L2 LINE L2 -1039 2275 2241 2282 185 28 5 chr11 66268604 66269026 -84514527 + MSTB1 LTR MaLR 1 432 0 469 280 254 34 chr11 66269026 66269480 -84514073 - L2 LINE L2 -1073 2241 1666 399 294 69 6 chr11 66270277 66270437 -84513116 + MIR SINE MIR 93 262 0 952 28 0 0 chr11 66270738 66270846 -84512707 + L1PA3 LINE L1 6045 6152 -3 419 296 129 5 chr11 66270904 66271090 -84512463 + MIR SINE MIR 41 249 -13 1768 156 82 56 chr11 66271227 66271605 -84511948 + MLT1B LTR MaLR 3 390 0 315 0 0 0 chr11 66271717 66271752 -84511801 + (T)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr11 66271774 66271796 -84511757 + GC_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr11 66271955 66271983 -84511570 + (A)n Simple_repeat Simple_repeat 1 28 0 1979 186 66 33 chr11 66272669 66273121 -84510432 - MLT1C LTR MaLR 0 467 1 312 254 68 11 chr11 66273133 66273268 -84510285 + MIR SINE MIR 45 186 -64 1332 272 75 28 chr11 66273765 66274285 -84509268 - L2 LINE L2 -3 3310 2775 579 266 136 48 chr11 66274631 66274985 -84508568 - MLT1J1 LTR MaLR -55 391 7 324 372 44 11 chr11 66275369 66275643 -84507910 - L2 LINE L2 -419 2895 2613 * 675 201 26 7 chr11 66275642 66275796 -84507757 + MIR SINE MIR 106 262 0 535 311 188 23 chr11 66275798 66275947 -84507606 - L2 LINE L2 -700 2614 2491 1824 154 28 49 chr11 66275947 66276336 -84507217 + L1MA7 LINE L1 5909 6289 -2 535 311 188 23 chr11 66276336 66276367 -84507186 - L2 LINE L2 -823 2491 2466 1578 184 53 0 chr11 66276367 66276641 -84506912 + AluJo SINE Alu 1 292 -20 194 0 0 37 chr11 66276641 66276668 -84506885 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 535 311 188 23 chr11 66276676 66277419 -84506134 - L2 LINE L2 -848 2466 1537 230 167 37 37 chr11 66277973 66278027 -84505526 + MIR SINE MIR 78 131 -77 2371 114 0 0 chr11 66278068 66278375 -84505178 - AluSq SINE Alu -6 307 1 350 234 115 22 chr11 66279078 66279266 -84504287 - MIR SINE MIR -16 246 45 212 232 11 15 chr11 66279223 66279319 -84504234 + MIR SINE MIR 13 152 -110 * 2325 99 0 0 chr11 66280325 66280617 -84502936 + AluSq SINE Alu 1 292 -21 512 293 63 0 chr11 66280687 66280878 -84502675 - MIR SINE MIR -14 248 46 2186 116 7 3 chr11 66281055 66281357 -84502196 + AluSg SINE Alu 1 303 -7 389 301 119 9 chr11 66283171 66283390 -84500163 - L3 LINE CR1 -222 1355 1113 529 223 58 0 chr11 66283605 66283744 -84499809 - MER117 DNA MER1_type -47 150 4 473 242 52 7 chr11 66284078 66284231 -84499322 + MIR3 SINE MIR 29 188 -20 443 330 74 18 chr11 66286292 66286726 -84496827 + L2 LINE L2 1637 2094 -1220 271 182 91 0 chr11 66287194 66287249 -84496304 + MLT1K LTR MaLR 511 570 -18 1349 177 34 46 chr11 66287344 66287672 -84495881 - MER33 DNA MER1_type 0 324 1 536 211 8 39 chr11 66288133 66288261 -84495292 - LTR16C LTR ERVL 0 491 368 319 237 144 10 chr11 66289481 66289578 -84493975 + MIR SINE MIR 36 145 -63 1214 128 6 0 chr11 66291232 66291404 -84492149 - AluSg/x SINE Alu 0 312 140 1926 158 3 0 chr11 66291722 66292014 -84491539 + AluSx SINE Alu 1 293 -19 25 31 0 0 chr11 66292193 66292225 -84491328 + AT_rich Low_complexity Low_complexity 1 32 0 1540 117 54 4 chr11 66293597 66293836 -84489717 - HSMAR1 DNA Mariner 0 1287 1037 4367 80 37 0 chr11 66293872 66294438 -84489115 - LTR8 LTR ERV1 -104 587 1 7246 69 17 6 chr11 66294438 66295369 -84488184 - HUERS-P1 LTR ERV1 0 6263 5323 * 26821 78 27 49 chr11 66295362 66296409 -84487144 - HUERS-P1 LTR ERV1 -2128 4135 3066 2389 104 0 7 chr11 66296409 66296718 -84486835 + AluSc SINE Alu 3 309 0 26821 78 27 49 chr11 66296718 66298253 -84485300 - HUERS-P1 LTR ERV1 -3197 3066 1683 2492 80 0 6 chr11 66298253 66298564 -84484989 - AluY SINE Alu -2 309 1 26821 78 27 49 chr11 66298564 66300210 -84483343 - HUERS-P1 LTR ERV1 -4580 1683 1 967 89 7 20 chr11 66300210 66300356 -84483197 - LTR8 LTR ERV1 0 691 548 * 7322 103 11 1 chr11 66300355 66301401 -84482152 - HSMAR1 DNA Mariner -230 1057 1 492 226 20 0 chr11 66301564 66301666 -84481887 + MER5B DNA MER1_type 75 178 0 23 0 0 0 chr11 66301761 66301784 -84481769 + AT_rich Low_complexity Low_complexity 1 23 0 284 358 112 50 chr11 66302306 66302644 -84480909 - L2 LINE L2 0 3272 2914 2007 149 3 10 chr11 66302981 66303290 -84480263 + AluSq SINE Alu 5 311 -2 14751 146 7 19 chr11 66303476 66306095 -84477458 + L1PA6 LINE L1 11 2597 -3549 14650 84 16 0 chr11 66306095 66307943 -84475610 + L1PA6 LINE L1 3303 5176 -978 7674 80 6 5 chr11 66307943 66308949 -84474604 - LTR13 LTR ERVK 0 1007 1 14650 84 16 0 chr11 66308949 66309931 -84473622 + L1PA6 LINE L1 5176 6141 -13 7532 81 1 2 chr11 66309935 66311759 -84471794 + L1PA7 LINE L1 4316 6148 -6 3140 29 5 13 chr11 66311801 66312187 -84471366 - L1PA3 LINE L1 0 6155 5773 186 270 22 79 chr11 66312230 66312319 -84471234 - L2 LINE L2 -626 2688 2605 360 376 44 0 chr11 66312379 66312584 -84470969 - L3 LINE CR1 -27 1550 1337 295 321 192 19 chr11 66312637 66312920 -84470633 + L2 LINE L2 2745 3065 -248 1088 336 15 45 chr11 66313019 66313558 -84469995 - L2 LINE L2 -662 2652 2130 1236 143 14 5 chr11 66313871 66314094 -84469459 + L1MA5A LINE L1 6070 6294 -3 2158 99 0 23 chr11 66314101 66314405 -84469148 + AluSc SINE Alu 1 297 -12 1990 45 0 4 chr11 66315033 66315275 -84468278 + L1PA3 LINE L1 5907 6147 -8 25 51 0 0 chr11 66315275 66315314 -84468239 + AT_rich Low_complexity Low_complexity 1 39 0 1440 146 104 16 chr11 66315611 66315920 -84467633 - L1MC2 LINE L1 -12 6332 5997 2093 25 0 0 chr11 66316457 66316701 -84466852 - L1PA2 LINE L1 -3 6152 5909 2638 24 0 0 chr11 66316703 66317041 -84466512 + L1P LINE L1 5058 5395 -751 1663 249 52 29 chr11 66318449 66319003 -84464550 + L1M4 LINE L1 8 574 -5968 2456 143 7 5 chr11 66319004 66319411 -84464142 - Tigger2 DNA MER2_type 0 2718 2311 2947 223 85 18 chr11 66319412 66320533 -84463020 + L1M4 LINE L1 675 1870 -4776 12051 136 20 23 chr11 66321223 66323049 -84460504 + L1PA6 LINE L1 11 1830 -4316 2199 124 0 3 chr11 66323049 66323347 -84460206 - AluSc SINE Alu -12 297 1 12051 136 20 23 chr11 66323347 66323656 -84459897 + L1PA6 LINE L1 1830 2139 -4007 848 118 7 0 chr11 66323668 66323804 -84459749 + (TA)n Simple_repeat Simple_repeat 2 138 0 17458 81 0 0 chr11 66323920 66327141 -84456412 + L1PA6 LINE L1 2913 6148 -6 3190 31 0 13 chr11 66327183 66327571 -84455982 - L1PA3 LINE L1 0 6155 5773 186 270 22 79 chr11 66327614 66327703 -84455850 - L2 LINE L2 -626 2688 2605 360 376 44 0 chr11 66327763 66327968 -84455585 - L3 LINE CR1 -27 1550 1337 295 321 192 19 chr11 66328021 66328304 -84455249 + L2 LINE L2 2745 3065 -248 1088 336 15 45 chr11 66328403 66328942 -84454611 - L2 LINE L2 -662 2652 2130 1236 143 14 5 chr11 66329255 66329478 -84454075 + L1MA5A LINE L1 6070 6294 -3 2158 99 0 23 chr11 66329485 66329789 -84453764 + AluSc SINE Alu 1 297 -12 1990 45 0 4 chr11 66330417 66330659 -84452894 + L1PA3 LINE L1 5907 6147 -8 25 51 0 0 chr11 66330659 66330698 -84452855 + AT_rich Low_complexity Low_complexity 1 39 0 1440 146 104 16 chr11 66330995 66331304 -84452249 - L1MC2 LINE L1 -12 6332 5997 2093 25 0 0 chr11 66331842 66332086 -84451467 - L1PA2 LINE L1 -3 6152 5909 2638 24 0 0 chr11 66332088 66332426 -84451127 + L1P LINE L1 5058 5395 -751 6017 43 3 1 chr11 66333164 66334255 -84449298 - L1PA2 LINE L1 -486 5668 4578 3333 32 7 2 chr11 66334355 66334767 -84448786 + L1PA4 LINE L1 5737 6150 -5 232 110 14 96 chr11 66334775 66334871 -84448682 + (TAAAA)n Simple_repeat Simple_repeat 1 88 0 234 105 0 0 chr11 66334908 66334946 -84448607 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1669 227 46 0 chr11 66334966 66335506 -84448047 + L1 LINE L1 3284 3898 -2248 1189 83 0 0 chr11 66335512 66335680 -84447873 + L1P3 LINE L1 5 172 -6289 11795 127 4 34 chr11 66335701 66336807 -84446746 + L1P3 LINE L1 1181 2194 -4267 2386 67 0 17 chr11 66336807 66337105 -84446448 + AluY SINE Alu 1 293 -18 11795 127 4 34 chr11 66337105 66338130 -84445423 + L1P3 LINE L1 2194 3248 -3213 946 132 7 0 chr11 66338130 66338266 -84445287 + AluSc SINE Alu 1 137 -172 851 202 0 14 chr11 66338268 66338481 -84445072 - L1 LINE L1 -937 5273 5064 2024 124 21 3 chr11 66338481 66338771 -84444782 - AluSx SINE Alu -17 295 1 602 198 42 9 chr11 66338777 66338989 -84444564 - L1 LINE L1 -5011 1123 899 537 353 48 24 chr11 66339367 66339744 -84443809 - L1 LINE L1 -5747 394 9 302 286 105 0 chr11 66339777 66339882 -84443671 + L1ME3 LINE L1 6045 6160 -2 1999 31 108 0 chr11 66340790 66341048 -84442505 - L1PA4 LINE L1 -6 6149 5864 186 43 0 0 chr11 66341833 66341856 -84441697 + (TTG)n Simple_repeat Simple_repeat 2 24 0 207 154 39 0 chr11 66341990 66342042 -84441511 + (TA)n Simple_repeat Simple_repeat 1 54 0 242 342 36 9 chr11 66342676 66342787 -84440766 + L2 LINE L2 3200 3313 0 361 243 29 87 chr11 66343573 66343746 -84439807 + MER69A DNA AcHobo 6 168 -9 225 290 90 10 chr11 66343789 66343889 -84439664 + MIR SINE MIR 95 202 -60 1192 130 24 0 chr11 66344433 66344641 -84438912 + L1PA13 LINE L1 1774 1986 -4801 189 0 0 0 chr11 66344641 66344662 -84438891 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 3047 48 0 3 chr11 66344663 66345040 -84438513 - L1PA4 LINE L1 -11 6144 5769 40405 55 1 0 chr11 66345066 66351205 -84432348 - L1PA2 LINE L1 -11 6144 1 5912 197 32 9 chr11 66351206 66352680 -84430873 + L1PA13 LINE L1 1977 3475 -3322 593 136 0 0 chr11 66352692 66352780 -84430773 + L1P LINE L1 11 98 -6048 * 10286 149 53 36 chr11 66352778 66354896 -84428657 + L1P LINE L1 623 2775 -3371 592 269 55 6 chr11 66357393 66357705 -84425848 + L1M4 LINE L1 4283 4609 -1537 564 321 44 0 chr11 66357699 66357970 -84425583 - L1ME3A LINE L1 -179 5991 5709 * 20659 153 48 8 chr11 66358843 66363185 -84420368 - L1MA3 LINE L1 0 7724 2950 2398 73 0 0 chr11 66363185 66363513 -84420040 + AluY SINE Alu 1 311 0 20659 153 48 8 chr11 66363513 66366571 -84416982 - L1MA3 LINE L1 -4774 2950 15 562 320 0 17 chr11 66367157 66367329 -84416224 - MER5B DNA MER1_type -1 177 9 251 153 17 17 chr11 66368952 66369011 -84414542 - L1MB7 LINE L1 -2 6182 6124 40689 52 4 4 chr11 66369020 66375175 -84408378 - L1PA5 LINE L1 0 6154 1 340 189 54 0 chr11 66375381 66375455 -84408098 + MSTD LTR MaLR 3 80 -348 1267 111 156 16 chr11 66375455 66375699 -84407854 + L1PA16 LINE L1 5888 6165 -1 1019 252 25 11 chr11 66375719 66375993 -84407560 + MSTD LTR MaLR 119 396 0 434 307 23 23 chr11 66376629 66376805 -84406748 - MER5B DNA MER1_type -2 176 1 220 276 87 47 chr11 66376856 66376983 -84406570 + L2 LINE L2 3181 3312 -1 3709 129 35 104 chr11 66378300 66379202 -84404351 - Tigger3(Golem) DNA MER2_type -1 3028 2189 327 301 0 10 chr11 66379563 66379666 -84403887 - LTR16A LTR ERVL -133 317 216 231 333 16 16 chr11 66380416 66380539 -84403014 + MLT1-int LTR MaLR 756 878 -493 753 156 37 0 chr11 66380837 66380972 -84402581 - MER73 LTR ERVL -5 639 500 * 1011 96 0 19 chr11 66380953 66381110 -84402443 - MLT2A2 LTR ERVL -299 154 1 200 274 0 0 chr11 66381270 66381321 -84402232 + CT-rich Low_complexity Low_complexity 3 53 0 183 42 0 0 chr11 66381381 66381405 -84402148 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 227 213 0 0 chr11 66383811 66383858 -84399695 + T-rich Low_complexity Low_complexity 1 47 0 2085 58 0 7 chr11 66383859 66384133 -84399420 - L1PA4 LINE L1 -3 6152 5881 22 0 0 0 chr11 66384163 66384185 -84399368 + AT_rich Low_complexity Low_complexity 1 22 0 2163 114 3 10 chr11 66385898 66386197 -84397356 + AluSp SINE Alu 1 297 -16 4875 210 29 28 chr11 66386625 66386980 -84396573 + HERVL74 LTR ERVL 1030 1383 -4302 6039 107 9 2 chr11 66386980 66388240 -84395313 + L1PA13 LINE L1 4880 6160 -3 4875 210 29 28 chr11 66388240 66389456 -84394097 + HERVL74 LTR ERVL 1383 2681 -3004 2169 143 22 6 chr11 66389456 66389814 -84393739 - THE1B LTR MaLR 0 364 1 4875 210 29 28 chr11 66389814 66390148 -84393405 + HERVL74 LTR ERVL 2681 3013 -2672 2260 194 25 32 chr11 66390148 66390631 -84392922 + L1 LINE L1 4335 4815 -1331 2058 137 24 0 chr11 66390631 66390924 -84392629 + AluSx SINE Alu 1 300 -12 2260 194 25 32 chr11 66390924 66391039 -84392514 + L1 LINE L1 4815 4929 -1217 * 15745 104 22 8 chr11 66391037 66393575 -84389978 + L1P LINE L1 1759 4334 -1812 6344 53 7 0 chr11 66393570 66394404 -84389149 - L1PA4 LINE L1 -1 6154 5315 * 1893 145 40 24 chr11 66394404 66394700 -84388853 - AluSq SINE Alu -12 301 1 383 329 59 12 chr11 66394830 66395000 -84388553 + MER5B DNA MER1_type 1 178 0 2444 112 20 6 chr11 66395740 66396098 -84387455 - THE1B LTR MaLR -1 363 1 5544 172 20 32 chr11 66396098 66396191 -84387362 - L1P LINE L1 -1492 4654 4561 2543 128 5 3 chr11 66396191 66396565 -84386988 - THE1C LTR MaLR 0 375 1 5544 172 20 32 chr11 66396565 66397651 -84385902 - L1P LINE L1 -1585 4561 3489 342 0 0 0 chr11 66397658 66397696 -84385857 + (TTA)n Simple_repeat Simple_repeat 2 39 0 5146 233 45 21 chr11 66397711 66400160 -84383393 - L1M2 LINE L1 -4110 2679 4 347 300 7 64 chr11 66402065 66402205 -84381348 - MIR SINE MIR -65 197 66 282 298 19 29 chr11 66402278 66402382 -84381171 - MER69 DNA AcHobo -2423 103 1 270 0 0 0 chr11 66403402 66403432 -84380121 + (TG)n Simple_repeat Simple_repeat 2 31 0 797 268 41 69 chr11 66403614 66403681 -84379872 - L1ME3 LINE L1 -28 6134 6067 2322 128 0 0 chr11 66403681 66403993 -84379560 + AluSx SINE Alu 1 312 0 797 268 41 69 chr11 66403993 66404417 -84379136 - L1ME3 LINE L1 -95 6067 5657 23 68 0 0 chr11 66404433 66404477 -84379076 + AT_rich Low_complexity Low_complexity 1 44 0 996 218 35 49 chr11 66404985 66405329 -84378224 + L1M1 LINE L1 3280 3618 -3947 186 356 67 31 chr11 66406890 66407115 -84376438 - L3 LINE CR1 -29 1548 1316 324 307 18 18 chr11 66407263 66407377 -84376176 - MER81 DNA DNA 0 114 1 227 325 114 49 chr11 66408046 66408292 -84375261 - MIR SINE MIR 0 262 1 26 64 0 0 chr11 66409100 66409147 -84374406 + AT_rich Low_complexity Low_complexity 1 47 0 1282 179 44 4 chr11 66409147 66409376 -84374177 - AluJb SINE Alu -31 281 44 4580 159 43 43 chr11 66409380 66409594 -84373959 - L1MA6 LINE L1 0 7719 7507 1915 119 58 0 chr11 66409594 66409871 -84373682 - AluY SINE Alu -18 293 1 4580 159 43 43 chr11 66409871 66410828 -84372725 - L1MA6 LINE L1 -212 7507 6545 4665 207 77 37 chr11 66410842 66413089 -84370464 - L1MA6 LINE L1 -2578 4987 2644 1634 189 78 74 chr11 66413122 66413388 -84370165 - MLT1C LTR MaLR -2 465 195 1740 145 93 0 chr11 66413388 66413657 -84369896 - AluSx SINE Alu -18 294 1 1634 189 78 74 chr11 66413657 66413851 -84369702 - MLT1C LTR MaLR -272 195 3 3334 122 27 0 chr11 66414040 66414563 -84368990 + L1PA15 LINE L1 5626 6162 -3 232 192 19 0 chr11 66414644 66414696 -84368857 + T-rich Low_complexity Low_complexity 2 54 0 30 27 0 0 chr11 66415437 66415474 -84368079 + AT_rich Low_complexity Low_complexity 1 37 0 1372 64 10 15 chr11 66415618 66415821 -84367732 - LTR14A LTR ERVK 0 344 143 5559 101 7 12 chr11 66415852 66416688 -84366865 - MER11C LTR ERVK -14 1057 226 41049 46 4 2 chr11 66416695 66422820 -84360733 + L1PA4 LINE L1 10 6147 -8 986 176 5 26 chr11 66422821 66423014 -84360539 + AluJb SINE Alu 121 309 -3 1116 79 0 23 chr11 66423022 66423199 -84360354 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 600 135 0 10 chr11 66423205 66423309 -84360244 + LTR56 LTR ERV1 327 429 -16 594 76 0 0 chr11 66423317 66423396 -84360157 - LOR1a LTR ERV1 -418 79 1 508 156 0 22 chr11 66423405 66423495 -84360058 - LOR1a-int LTR ERV1 -2 8118 8031 801 157 0 0 chr11 66423496 66423630 -84359923 - LOR1-int LTR ERV1 -2057 6063 5930 * 898 106 53 16 chr11 66423629 66423818 -84359735 - LOR1-int LTR ERV1 -3772 4348 4153 2235 170 12 2 chr11 66423820 66424225 -84359328 + L1PA8 LINE L1 1 409 -5466 1333 165 6 0 chr11 66424252 66424563 -84358990 - L1P3 LINE L1 -4668 2119 1806 365 178 0 0 chr11 66424564 66424637 -84358916 + L1PA8 LINE L1 436 508 -5367 4987 197 24 67 chr11 66424639 66426558 -84356995 + L1PA8 LINE L1 719 2606 -3855 17610 137 7 0 chr11 66426559 66430307 -84353246 + L1PA8 LINE L1 2733 6492 0 1536 136 0 0 chr11 66431294 66431537 -84352016 - LOR1-int LTR ERV1 -3957 4163 3921 34792 47 6 2 chr11 66431791 66437173 -84346380 - L1PA4 LINE L1 -4 6151 754 23000 59 11 11 chr11 66437553 66441544 -84342009 + L1PA6 LINE L1 2164 6154 0 3105 185 12 6 chr11 66441545 66442233 -84341320 + L1PA12 LINE L1 3129 3820 -2641 9464 161 11 4 chr11 66442832 66444649 -84338904 + L1PA12 LINE L1 3818 5646 -815 25052 114 10 14 chr11 66444652 66450383 -84333170 + L1P3 LINE L1 1 5765 -722 3173 102 16 12 chr11 66450383 66450874 -84332679 + LTR15 LTR ERV1 1 493 0 27931 103 19 18 chr11 66450874 66454397 -84329156 + HERV15 LTR ERV1 1 3618 -5117 7292 34 17 2 chr11 66454397 66455628 -84327925 + L1PA4 LINE L1 4912 6155 0 27931 103 19 18 chr11 66455628 66456772 -84326781 + HERV15 LTR ERV1 3618 4759 -3976 2695 135 11 2 chr11 66456769 66457206 -84326347 + HERV15 LTR ERV1 8294 8734 -1 * 3557 75 16 12 chr11 66457206 66457697 -84325856 + LTR15 LTR ERV1 1 493 0 5593 65 0 3 chr11 66457697 66458401 -84325152 + L1PA7 LINE L1 5447 6148 -6 4068 105 25 22 chr11 66458401 66458431 -84325122 + L1PA12 LINE L1 5637 5665 -822 2892 112 33 0 chr11 66458431 66458885 -84324668 - L1PA14 LINE L1 -2 6159 5691 4068 105 25 22 chr11 66458885 66459638 -84323915 + L1PA12 LINE L1 5665 6480 -7 484 224 14 7 chr11 66459667 66459814 -84323739 - MER53 DNA DNA -31 158 11 273 282 58 0 chr11 66459807 66459963 -84323590 - MER53 DNA DNA -5 184 20 * 2859 121 69 10 chr11 66460853 66461334 -84322219 + L1PA16 LINE L1 5656 6164 -2 280 115 39 0 chr11 66461726 66461778 -84321775 + L1P4 LINE L1 5654 5707 -459 * 836 253 75 5 chr11 66461772 66462148 -84321405 + L1M4 LINE L1 4208 4609 -1537 564 321 44 0 chr11 66462142 66462413 -84321140 - L1ME3A LINE L1 -179 5991 5709 * 12593 157 55 10 chr11 66463286 66467627 -84315926 - L1MA3 LINE L1 0 7724 3177 899 83 0 0 chr11 66467627 66467748 -84315805 + AluYb8 SINE Alu 1 121 -197 13003 134 7 0 chr11 66467748 66470690 -84312863 + L1PA8 LINE L1 3229 6177 0 1514 140 0 0 chr11 66471677 66471920 -84311633 - LOR1-int LTR ERV1 -3957 4163 3921 39664 61 4 0 chr11 66472174 66476875 -84306678 - L1PA5 LINE L1 -4 6150 1418 458 17 0 0 chr11 66476875 66476933 -84306620 - L1PA4 LINE L1 -3 6152 6095 39664 61 4 0 chr11 66476933 66478357 -84305196 - L1PA5 LINE L1 -4736 1418 1 9485 168 23 25 chr11 66478359 66480410 -84303143 - L1P LINE L1 -2953 3193 1147 933 175 0 6 chr11 66480411 66480588 -84302965 - L1 LINE L1 -2186 3960 3785 209 200 124 124 chr11 66480896 66481041 -84302512 - L2 LINE L2 -1 3312 3168 395 296 45 45 chr11 66481073 66481249 -84302304 + MER5B DNA MER1_type 1 176 -2 223 254 34 17 chr11 66481289 66481348 -84302205 - L2 LINE L2 -257 3056 2997 7478 31 0 0 chr11 66481798 66483060 -84300493 + L1PA3 LINE L1 4918 6180 0 14122 40 0 1 chr11 66483129 66484931 -84298622 - L1PA4 LINE L1 -893 5253 3453 7322 33 5 0 chr11 66484931 66485812 -84297741 + L1PA4 LINE L1 5270 6155 0 21 0 0 0 chr11 66486132 66486153 -84297400 + AT_rich Low_complexity Low_complexity 1 21 0 1349 236 38 33 chr11 66486366 66486760 -84296793 - MSTD LTR MaLR 0 396 1 298 379 40 0 chr11 66487570 66487842 -84295711 + L1ME3A LINE L1 5709 5991 -179 * 1169 283 52 12 chr11 66487836 66488487 -84295066 - L1M4 LINE L1 -1537 4609 3933 39437 42 26 2 chr11 66488504 66494513 -84289040 - L1PA3 LINE L1 -2 6153 1 1444 171 30 0 chr11 66494525 66494794 -84288759 + Tigger3(Golem) DNA MER2_type 69 3035 0 24 32 0 0 chr11 66495121 66495152 -84288401 + AT_rich Low_complexity Low_complexity 1 31 0 201 74 0 0 chr11 66495410 66495437 -84288116 + (CA)n Simple_repeat Simple_repeat 2 28 0 234 119 0 24 chr11 66495520 66495562 -84287991 - L1P LINE L1 -3589 2557 2517 915 201 81 104 chr11 66496157 66496540 -84287013 - MLT1A2 LTR MaLR 0 374 1 2903 148 92 18 chr11 66496915 66497531 -84286022 - L1PA16 LINE L1 -14 6152 5491 2037 197 16 13 chr11 66497533 66498019 -84285534 + L1 LINE L1 3855 4346 -1800 2350 128 31 10 chr11 66498425 66498467 -84285086 - L1PA12 LINE L1 0 7606 7566 279 0 0 0 chr11 66498467 66498498 -84285055 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 2304 50 4 0 chr11 66498498 66498778 -84284775 - AluY SINE Alu -30 281 1 2350 128 31 10 chr11 66498778 66499126 -84284427 - L1PA12 LINE L1 -39 7567 7207 530 86 0 0 chr11 66499140 66499210 -84284343 - L1PA10 LINE L1 -11 6157 6088 12493 234 22 15 chr11 66499210 66504202 -84279351 - L1PA12 LINE L1 -377 7226 2182 4159 62 0 8 chr11 66504371 66504906 -84278647 - L1PA6 LINE L1 -2 6152 5622 455 332 60 27 chr11 66505718 66506085 -84277468 - L1PA12 LINE L1 -7202 379 1 414 204 53 23 chr11 66506087 66506219 -84277334 - MER53 DNA DNA -52 137 2 361 297 34 0 chr11 66506941 66507059 -84276494 - L2 LINE L2 0 3313 3192 4593 46 0 0 chr11 66507148 66507740 -84275813 + L1P LINE L1 4421 5012 -1134 3431 20 0 0 chr11 66507740 66508133 -84275420 + L1PA3 LINE L1 5758 6151 -4 1034 171 10 5 chr11 66508376 66508575 -84274978 - L1MB1 LINE L1 -1 6167 5968 11528 39 0 1 chr11 66508577 66510086 -84273467 - L1PA4 LINE L1 -2435 3711 2204 13620 36 0 1 chr11 66510088 66512515 -84271038 + L1PA4 LINE L1 3726 6153 -2 3135 44 0 5 chr11 66512515 66512901 -84270652 + L1PA4 LINE L1 5770 6155 0 1210 196 23 17 chr11 66512903 66513204 -84270349 + L1MB7 LINE L1 5862 6164 -20 420 313 11 22 chr11 66514810 66514989 -84268564 + MER5B DNA MER1_type 1 177 -1 207 291 114 25 chr11 66515014 66515093 -84268460 - L2 LINE L2 -219 3053 2968 329 322 57 4 chr11 66516374 66516619 -84266934 + L1ME3A LINE L1 5709 5966 -204 465 291 143 13 chr11 66516643 66517103 -84266450 - L1M4 LINE L1 -1541 4605 4086 267 103 0 0 chr11 66517182 66517221 -84266332 + (T)n Simple_repeat Simple_repeat 1 39 0 308 240 48 0 chr11 66518304 66518429 -84265124 + MER53 DNA DNA 20 150 -39 535 217 40 17 chr11 66518461 66518636 -84264917 - MER53 DNA DNA -10 179 1 349 263 81 0 chr11 66519160 66519259 -84264294 - MIR SINE MIR -60 202 96 321 253 21 91 chr11 66519293 66519479 -84264074 - MER69A DNA AcHobo 0 177 5 234 322 42 8 chr11 66520272 66520390 -84263163 - L2 LINE L2 0 3313 3192 4788 241 29 9 chr11 66520773 66521397 -84262156 + L1PA15 LINE L1 2129 2739 -3407 180 0 0 0 chr11 66521397 66521417 -84262136 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 4788 241 29 9 chr11 66521417 66522326 -84261227 + L1PA15 LINE L1 2739 3692 -2454 5763 210 15 45 chr11 66522327 66523799 -84259754 + L1PA15 LINE L1 3867 5294 -871 2172 117 0 0 chr11 66523799 66524106 -84259447 - AluSx SINE Alu 0 307 1 5763 210 15 45 chr11 66524106 66524953 -84258600 + L1PA15 LINE L1 5294 6165 0 591 351 44 16 chr11 66526801 66527168 -84256385 + L1M1 LINE L1 24 400 -5741 812 262 92 5 chr11 66527558 66527843 -84255710 + L1M1 LINE L1 915 1241 -4890 2356 111 0 0 chr11 66527843 66528149 -84255404 + AluSc SINE Alu 1 306 -3 812 262 92 5 chr11 66528149 66528233 -84255320 + L1M1 LINE L1 1241 1316 -4815 * 6001 97 15 2 chr11 66528227 66529189 -84254364 - L1PA10 LINE L1 -22 6146 5175 3062 245 77 5 chr11 66529345 66530267 -84253286 + L1PBa LINE L1 58 1045 -5818 7478 137 66 11 chr11 66530277 66531812 -84251741 + L1PBa LINE L1 1107 2866 -3997 3107 144 9 0 chr11 66531795 66532349 -84251204 + L1P LINE L1 1939 2497 -4365 * 2820 212 86 1 chr11 66532347 66533088 -84250465 + L1 LINE L1 3910 4713 -1433 * 12125 181 18 31 chr11 66533306 66535194 -84248359 + L1M1 LINE L1 1308 3219 -2991 7126 57 9 0 chr11 66535194 66536844 -84246709 + L1PA8 LINE L1 4525 6164 -8 12125 181 18 31 chr11 66536844 66539555 -84243998 + L1M1 LINE L1 3219 5279 -931 225 0 0 0 chr11 66539555 66539580 -84243973 + (A)n Simple_repeat Simple_repeat 1 25 0 8205 167 15 4 chr11 66539713 66541139 -84242414 + L1M1 LINE L1 685 2126 -5439 7138 137 2 8 chr11 66541241 66542433 -84241120 + L1P LINE L1 3511 4696 -1450 364 164 0 0 chr11 66542428 66542495 -84241058 + L1P LINE L1 5046 5112 -1034 * 7365 37 6 1 chr11 66543565 66544699 -84238854 + L1PA4 LINE L1 5016 6152 -3 971 176 5 27 chr11 66544700 66545069 -84238484 + AluJb SINE Alu 126 490 0 600 135 0 10 chr11 66545075 66545179 -84238374 + LTR56 LTR ERV1 327 429 -16 594 76 0 0 chr11 66545187 66545266 -84238287 - LOR1a LTR ERV1 -418 79 1 508 156 0 22 chr11 66545274 66545364 -84238189 - LOR1a-int LTR ERV1 -2 8118 8031 801 157 0 0 chr11 66545365 66545499 -84238054 - LOR1-int LTR ERV1 -2057 6063 5930 * 898 106 53 16 chr11 66545498 66545687 -84237866 - LOR1-int LTR ERV1 -3772 4348 4153 2900 212 40 131 chr11 66545689 66547376 -84236177 + L1P3 LINE L1 1 1576 -4734 15108 101 24 7 chr11 66547647 66550064 -84233489 + L1P3 LINE L1 2186 4642 -1819 7889 107 10 2 chr11 66550066 66550900 -84232653 - L1PA4 LINE L1 -1 6154 5328 2263 113 7 0 chr11 66550900 66551200 -84232353 - AluSp SINE Alu -11 302 1 7889 107 10 2 chr11 66551200 66552329 -84231224 - L1PA4 LINE L1 -827 5328 4179 587 123 39 8 chr11 66552332 66552462 -84231091 + CT-rich Low_complexity Low_complexity 2 135 0 20837 129 12 84 chr11 66552462 66552481 -84231072 - L1PA4 LINE L1 -1979 4167 4148 1295 58 6 0 chr11 66552481 66552654 -84230899 + (TTCCC)n Simple_repeat Simple_repeat 4 177 0 20837 129 12 84 chr11 66552654 66557113 -84226440 - L1PA4 LINE L1 -1998 4148 12 249 376 30 0 chr11 66557264 66557429 -84226124 + MLT1-int LTR MaLR 695 864 -507 260 254 94 111 chr11 66557672 66557960 -84225593 + MLT1-int LTR MaLR 1084 1366 -5 427 244 16 16 chr11 66557960 66558083 -84225470 - L1P3 LINE L1 -5201 674 552 1456 250 11 5 chr11 66558122 66558498 -84225055 - L1P3 LINE L1 -5490 385 8 230 313 0 0 chr11 66559402 66559466 -84224087 + L2 LINE L2 3250 3313 0 1277 116 0 6 chr11 66559586 66559758 -84223795 - AluSg/x SINE Alu -12 300 130 311 250 29 0 chr11 66560288 66560356 -84223197 - MER5B DNA MER1_type -15 163 94 1164 168 9 30 chr11 66562546 66562778 -84220775 - MLT1B LTR MaLR 0 390 164 185 91 0 30 chr11 66562778 66562811 -84220742 + (TTC)n Simple_repeat Simple_repeat 3 34 0 2243 123 0 7 chr11 66562820 66563130 -84220423 - AluSx SINE Alu -4 308 1 311 149 15 15 chr11 66563134 66563201 -84220352 - MLT1B LTR MaLR -217 173 107 397 353 0 7 chr11 66563465 66563604 -84219949 - MIR SINE MIR -112 150 13 335 304 83 33 chr11 66563908 66564089 -84219464 - MIR SINE MIR 0 262 73 1540 212 19 79 chr11 66564888 66565044 -84218509 + LTR47B LTR ERVL 1 165 -278 2110 125 3 0 chr11 66565044 66565332 -84218221 - AluY SINE Alu -22 289 1 1540 212 19 79 chr11 66565332 66565646 -84217907 + LTR47B LTR ERVL 165 443 0 7637 30 0 3 chr11 66566171 66567309 -84216244 - L1PA4 LINE L1 -3 6152 5016 2343 213 25 17 chr11 66568684 66569209 -84214344 - LTR31 LTR ERV1 -15 604 76 917 337 46 29 chr11 66569479 66570235 -84213318 + LTR57-int LTR ERVL 1870 2638 -2705 454 173 10 10 chr11 66570254 66570358 -84213195 - L1 LINE L1 -867 5981 5878 795 155 7 0 chr11 66570563 66570705 -84212848 - L1P LINE L1 -2250 3896 3754 4488 228 30 4 chr11 66570706 66571903 -84211650 - L1 LINE L1 -1307 5541 4314 289 83 0 21 chr11 66571903 66571951 -84211602 - MER4C LTR ERV1 0 465 419 1878 217 255 2 chr11 66571951 66572559 -84210994 - L1PA15-16 LINE L1 -4762 2822 2061 246 353 35 41 chr11 66572581 66572751 -84210802 - L1PA15-16 LINE L1 -5641 1944 1776 569 342 59 48 chr11 66572958 66573230 -84210323 - L1 LINE L1 -5782 1067 793 843 327 18 15 chr11 66573989 66574390 -84209163 - L1PA15-16 LINE L1 -7166 415 14 9256 232 44 18 chr11 66574406 66577056 -84206497 - L1 LINE L1 -2579 4269 1411 2799 55 0 0 chr11 66577056 66577404 -84206149 - L1PA4 LINE L1 0 6155 5808 9256 232 44 18 chr11 66577404 66578847 -84204706 - L1 LINE L1 -5437 1411 7 492 249 63 63 chr11 66578826 66579159 -84204394 - L1ME2 LINE L1 -162 6704 6372 * 263 254 46 23 chr11 66579319 66579449 -84204104 + L1MD2 LINE L1 2262 2394 -4002 229 320 0 8 chr11 66579456 66579578 -84203975 + L1MD2 LINE L1 4636 4756 -1459 19751 90 9 0 chr11 66579578 66583198 -84200355 + L1PA7 LINE L1 2515 6153 -1 631 227 33 123 chr11 66583224 66583590 -84199963 + L1MA9 LINE L1 5942 6274 -38 473 250 14 7 chr11 66583606 66583754 -84199799 + L1MD2 LINE L1 5838 5986 -325 923 196 32 114 chr11 66583763 66584105 -84199448 + L1MD2 LINE L1 6112 6425 -3 255 309 65 0 chr11 66584108 66584247 -84199306 + L1MEc LINE L1 2347 2494 -3721 1910 148 40 23 chr11 66585550 66585853 -84197700 - AluSq SINE Alu -5 308 1 23 68 0 0 chr11 66586376 66586420 -84197133 + AT_rich Low_complexity Low_complexity 1 44 0 748 283 45 48 chr11 66586436 66586856 -84196697 + L1ME3 LINE L1 5657 6075 -87 2328 125 0 0 chr11 66586860 66587172 -84196381 - AluSx SINE Alu 0 312 1 1021 145 0 47 chr11 66587173 66587366 -84196187 - MLT1C LTR MaLR -281 186 3 3319 124 27 0 chr11 66587555 66588078 -84195475 + L1PA15 LINE L1 5626 6162 -3 232 192 19 0 chr11 66588159 66588211 -84195342 + T-rich Low_complexity Low_complexity 2 54 0 30 27 0 0 chr11 66588951 66588988 -84194565 + AT_rich Low_complexity Low_complexity 1 37 0 1372 64 10 15 chr11 66589132 66589335 -84194218 - LTR14A LTR ERVK 0 344 143 5567 100 6 13 chr11 66589366 66590204 -84193349 - MER11C LTR ERVK -14 1057 226 1966 86 18 0 chr11 66590211 66590490 -84193063 + L1P LINE L1 10 293 -5853 16796 49 3 1 chr11 66590590 66592802 -84190751 - L1P LINE L1 -3442 2704 489 2392 209 104 32 chr11 66642813 66643861 -84139692 - L1 LINE L1 -3791 3774 2644 1634 189 78 74 chr11 66643894 66644160 -84139393 - MLT1C LTR MaLR -2 465 195 1725 149 93 0 chr11 66644160 66644429 -84139124 - AluSx SINE Alu -18 294 1 1634 189 78 74 chr11 66644429 66644623 -84138930 - MLT1C LTR MaLR -272 195 3 3319 123 25 6 chr11 66644812 66645339 -84138214 + L1PA15 LINE L1 5626 6162 -3 232 192 19 0 chr11 66645420 66645472 -84138081 + T-rich Low_complexity Low_complexity 2 54 0 30 27 0 0 chr11 66646212 66646249 -84137304 + AT_rich Low_complexity Low_complexity 1 37 0 1372 64 10 15 chr11 66646393 66646596 -84136957 - LTR14A LTR ERVK 0 344 143 5576 99 7 12 chr11 66646627 66647463 -84136090 - MER11C LTR ERVK -14 1057 226 38525 47 7 2 chr11 66647470 66653576 -84129977 + L1PA4 LINE L1 10 6145 -10 936 173 10 35 chr11 66653580 66653960 -84129593 + AluJb SINE Alu 121 312 0 600 135 0 10 chr11 66653969 66654073 -84129480 + LTR56 LTR ERV1 327 429 -16 594 76 0 0 chr11 66654081 66654160 -84129393 - LOR1a LTR ERV1 -418 79 1 508 156 0 22 chr11 66654170 66654260 -84129293 - LOR1a-int LTR ERV1 -2 8118 8031 801 157 0 0 chr11 66654261 66654395 -84129158 - LOR1-int LTR ERV1 -2057 6063 5930 * 898 106 53 16 chr11 66654394 66654583 -84128970 - LOR1-int LTR ERV1 -3772 4348 4153 2213 173 12 2 chr11 66654585 66654990 -84128563 + L1PA8 LINE L1 1 409 -5466 1333 165 6 0 chr11 66655017 66655328 -84128225 - L1P3 LINE L1 -4668 2119 1806 365 178 0 0 chr11 66655329 66655402 -84128151 + L1PA8 LINE L1 436 508 -5367 4960 197 24 67 chr11 66655404 66657323 -84126230 + L1PA8 LINE L1 719 2606 -3855 17647 137 7 0 chr11 66657324 66661072 -84122481 + L1PA8 LINE L1 2733 6492 0 1536 136 0 0 chr11 66662059 66662302 -84121251 - LOR1-int LTR ERV1 -3957 4163 3921 39574 61 4 0 chr11 66662556 66667256 -84116297 - L1PA5 LINE L1 -4 6150 1417 458 17 0 0 chr11 66667256 66667314 -84116239 - L1PA4 LINE L1 -3 6152 6095 39574 61 4 0 chr11 66667314 66668737 -84114816 - L1PA5 LINE L1 -4737 1417 1 9538 167 23 24 chr11 66668739 66670788 -84112765 - L1P LINE L1 -2953 3193 1147 933 175 0 6 chr11 66670789 66670966 -84112587 - L1 LINE L1 -2186 3960 3785 243 267 199 58 chr11 66671274 66671451 -84112102 - L2 LINE L2 -1 3312 3161 309 294 40 45 chr11 66671451 66671628 -84111925 + MER5B DNA MER1_type 1 176 -2 243 267 199 58 chr11 66671628 66671727 -84111826 - L2 LINE L2 -152 3161 2997 7494 29 0 0 chr11 66672177 66673442 -84110111 + L1PA3 LINE L1 4918 6183 0 14151 40 0 0 chr11 66673510 66675312 -84108241 - L1PA4 LINE L1 -892 5254 3453 7344 32 5 0 chr11 66675312 66676193 -84107360 + L1PA4 LINE L1 5270 6155 0 21 0 0 0 chr11 66676513 66676534 -84107019 + AT_rich Low_complexity Low_complexity 1 21 0 1359 236 38 33 chr11 66676746 66677140 -84106413 - MSTD LTR MaLR 0 396 1 280 382 40 0 chr11 66677950 66678222 -84105331 + L1ME3A LINE L1 5709 5991 -179 * 1152 283 52 12 chr11 66678216 66678867 -84104686 - L1M4 LINE L1 -1537 4609 3933 19854 35 6 0 chr11 66678884 66682095 -84101458 - L1PA3 LINE L1 -2 6153 2927 563 91 0 0 chr11 66682195 66682283 -84101270 + L1MA2 LINE L1 6217 6304 0 356 278 42 28 chr11 66682449 66682593 -84100960 + MLT1-int LTR MaLR 719 864 -507 343 276 17 105 chr11 66682806 66682987 -84100566 + MLT1-int LTR MaLR 1023 1187 -184 27 29 0 0 chr11 66683931 66683965 -84099588 + AT_rich Low_complexity Low_complexity 1 34 0 232 70 47 0 chr11 66684161 66684204 -84099349 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 6785 74 7 2 chr11 66684204 66685349 -84098204 - L1PA7 LINE L1 -16 6138 4992 40805 33 21 0 chr11 66685358 66691381 -84092172 - L1PA2 LINE L1 -1 6154 1 33293 85 30 1 chr11 66691381 66696235 -84087318 - L1PA7 LINE L1 -1141 5005 11 13567 149 54 26 chr11 66696239 66698888 -84084665 - L1P LINE L1 -3414 2732 11 411 176 2 4 chr11 66699326 66699420 -84084133 + L1M LINE L1 5336 5428 -884 3335 148 64 114 chr11 66699423 66699977 -84083576 + L1MA4A LINE L1 5212 5676 -627 192 40 0 0 chr11 66699977 66700002 -84083551 + (TG)n Simple_repeat Simple_repeat 1 25 0 3335 148 64 114 chr11 66700002 66700597 -84082956 + L1MA4A LINE L1 5676 6299 -4 4028 177 29 9 chr11 66700676 66701606 -84081947 - L1 LINE L1 -1934 5172 4224 228 308 0 0 chr11 66701634 66701741 -84081812 - L1 LINE L1 -4967 2063 1957 21 0 0 0 chr11 66701741 66701762 -84081791 + AT_rich Low_complexity Low_complexity 1 21 0 41018 42 5 12 chr11 66701762 66707947 -84075606 - L1PA4 LINE L1 -3 6152 13 409 281 16 66 chr11 66707948 66708204 -84075349 - L1 LINE L1 -5060 1970 1728 805 356 16 25 chr11 66709025 66709471 -84074082 - L1 LINE L1 -5503 1524 1083 302 175 25 12 chr11 66709479 66709559 -84073994 - L1MA7 LINE L1 -334 5957 5877 26 30 0 0 chr11 66711040 66711073 -84072480 + AT_rich Low_complexity Low_complexity 1 33 0 315 0 0 0 chr11 66711101 66711136 -84072417 + (TG)n Simple_repeat Simple_repeat 2 36 0 2468 219 39 63 chr11 66711137 66711534 -84072019 - L1MA10 LINE L1 -98 6236 5831 455 150 10 30 chr11 66711534 66711634 -84071919 - L1PA16 LINE L1 0 6166 6069 2468 219 39 63 chr11 66711634 66711668 -84071885 - L1MA10 LINE L1 -503 5831 5798 270 0 0 0 chr11 66711668 66711698 -84071855 + (TG)n Simple_repeat Simple_repeat 2 31 0 2468 219 39 63 chr11 66711698 66712740 -84070813 - L1MA10 LINE L1 -536 5798 4802 28 29 0 0 chr11 66712908 66712943 -84070610 + AT_rich Low_complexity Low_complexity 1 35 0 3731 107 73 40 chr11 66712980 66713469 -84070084 - L1PB3 LINE L1 -1 6153 5635 2647 87 11 26 chr11 66713469 66713850 -84069703 + THE1C LTR MaLR 1 375 0 3731 107 73 40 chr11 66713850 66714034 -84069519 - L1PB3 LINE L1 -519 5635 5458 3163 194 29 9 chr11 66714036 66714805 -84068748 - L1PB3 LINE L1 -748 5398 4615 24 0 0 0 chr11 66714805 66714829 -84068724 + AT_rich Low_complexity Low_complexity 1 24 0 489 198 35 0 chr11 66715116 66715232 -84068321 - L1MA9 LINE L1 -2 6310 6191 2083 157 39 34 chr11 66715254 66715802 -84067751 + MLT2A2 LTR ERVL 1 554 0 342 153 0 0 chr11 66716396 66716455 -84067098 + T-rich Low_complexity Low_complexity 1 59 0 21055 48 46 3 chr11 66716555 66719365 -84064188 - L1P LINE L1 -3214 2932 1 1444 171 30 0 chr11 66719377 66719646 -84063907 + Tigger3(Golem) DNA MER2_type 69 3035 0 24 32 0 0 chr11 66719973 66720004 -84063549 + AT_rich Low_complexity Low_complexity 1 31 0 201 74 0 0 chr11 66720262 66720289 -84063264 + (CA)n Simple_repeat Simple_repeat 2 28 0 234 119 0 24 chr11 66720372 66720414 -84063139 - L1P LINE L1 -3589 2557 2517 915 201 81 104 chr11 66721009 66721392 -84062161 - MLT1A2 LTR MaLR 0 374 1 2903 148 92 18 chr11 66721767 66722383 -84061170 - L1PA16 LINE L1 -14 6152 5491 2015 201 21 8 chr11 66722398 66722871 -84060682 + L1 LINE L1 3868 4346 -1800 2350 128 31 10 chr11 66723277 66723319 -84060234 - L1PA12 LINE L1 0 7606 7566 279 0 0 0 chr11 66723319 66723350 -84060203 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 2255 57 4 0 chr11 66723350 66723630 -84059923 - AluY SINE Alu -30 281 1 2350 128 31 10 chr11 66723630 66723978 -84059575 - L1PA12 LINE L1 -39 7567 7207 530 86 0 0 chr11 66723992 66724062 -84059491 - L1PA10 LINE L1 -11 6157 6088 12490 234 22 15 chr11 66724062 66729054 -84054499 - L1PA12 LINE L1 -377 7226 2182 4176 60 0 8 chr11 66729223 66729758 -84053795 - L1PA6 LINE L1 -2 6152 5622 476 330 60 27 chr11 66730587 66730954 -84052599 - L1PA12 LINE L1 -7202 379 1 414 204 53 23 chr11 66730956 66731088 -84052465 - MER53 DNA DNA -52 137 2 361 297 34 0 chr11 66731810 66731928 -84051625 - L2 LINE L2 0 3313 3192 4593 46 0 0 chr11 66732017 66732609 -84050944 + L1P LINE L1 4421 5012 -1134 3431 20 0 0 chr11 66732609 66733002 -84050551 + L1PA3 LINE L1 5758 6151 -4 1034 171 10 5 chr11 66733245 66733444 -84050109 - L1MB1 LINE L1 -1 6167 5968 11528 40 0 1 chr11 66733446 66734955 -84048598 - L1PA4 LINE L1 -2435 3711 2204 13577 37 0 1 chr11 66734957 66737384 -84046169 + L1PA4 LINE L1 3726 6153 -2 3134 44 0 5 chr11 66737384 66737770 -84045783 + L1PA4 LINE L1 5770 6155 0 1222 193 23 17 chr11 66737772 66738073 -84045480 + L1MB7 LINE L1 5862 6164 -20 420 313 11 22 chr11 66739679 66739858 -84043695 + MER5B DNA MER1_type 1 177 -1 230 302 0 0 chr11 66739883 66739936 -84043617 - L2 LINE L2 -219 3053 3001 329 322 57 4 chr11 66741243 66741488 -84042065 + L1ME3A LINE L1 5709 5966 -204 325 282 37 16 chr11 66741512 66741700 -84041853 - L1M4 LINE L1 -1541 4605 4414 352 303 94 8 chr11 66741738 66741972 -84041581 - L1M4 LINE L1 -1807 4339 4086 267 103 0 0 chr11 66742051 66742090 -84041463 + (T)n Simple_repeat Simple_repeat 1 39 0 461 113 50 0 chr11 66742199 66742279 -84041274 - AluY SINE Alu -226 84 1 1569 107 27 0 chr11 66742674 66742898 -84040655 - MER30 DNA MER1_type 0 230 1 201 291 50 43 chr11 66743747 66743888 -84039665 + MIR SINE MIR 121 262 0 4277 179 14 10 chr11 66746795 66747090 -84036463 - MER54B LTR ERVL -3 790 498 267 31 0 0 chr11 66747090 66747122 -84036431 + (TTA)n Simple_repeat Simple_repeat 2 33 0 511 67 13 0 chr11 66747122 66747197 -84036356 - L1PB1 LINE L1 -10 6141 6066 4277 179 14 10 chr11 66747197 66747687 -84035866 - MER54B LTR ERVL -294 499 1 383 18 107 0 chr11 66747724 66747780 -84035773 + L1P LINE L1 4212 4273 -1873 2737 173 98 21 chr11 66747780 66748391 -84035162 - L1MB1 LINE L1 -28 6842 6176 216 86 0 0 chr11 66748391 66748426 -84035127 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 2737 173 98 21 chr11 66748426 66748469 -84035084 - L1MB1 LINE L1 -694 6176 6138 787 215 12 6 chr11 66748523 66748695 -84034858 - L1MB1 LINE L1 -1977 4871 4699 * 827 264 41 39 chr11 66748690 66749053 -84034500 - L1MB1 LINE L1 -4172 2677 2314 269 391 35 0 chr11 66749443 66749530 -84034023 + MIR SINE MIR 3 92 -170 374 127 70 0 chr11 66749565 66749636 -84033917 - L1PA14 LINE L1 0 6161 6086 2968 191 40 9 chr11 66749636 66750267 -84033286 + L1P4 LINE L1 4668 5323 -842 180 0 0 0 chr11 66750267 66750287 -84033266 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2968 191 40 9 chr11 66750287 66750540 -84033013 + L1P4 LINE L1 5323 5567 -598 * 9728 202 50 15 chr11 66750538 66753251 -84030302 - L1 LINE L1 -1432 6133 3325 250 225 84 0 chr11 66753249 66753320 -84030233 + L1M1 LINE L1 2515 2591 -4974 * 13603 159 38 6 chr11 66753323 66755566 -84027987 + L1 LINE L1 17 2332 -5233 7975 137 67 9 chr11 66755570 66758032 -84025521 + L1PBa LINE L1 58 2866 -3997 3269 146 9 0 chr11 66758015 66758569 -84024984 + L1 LINE L1 2642 3200 -4365 * 3018 213 86 1 chr11 66758567 66759308 -84024245 + L1 LINE L1 5329 6132 -1433 * 12957 186 18 21 chr11 66759526 66761414 -84022139 + L1M1 LINE L1 2663 4555 -3010 7112 58 9 0 chr11 66761414 66763062 -84020491 + L1PA8 LINE L1 4525 6164 -8 12957 186 18 21 chr11 66763062 66765365 -84018188 + L1M1 LINE L1 4555 6634 -931 1941 158 17 26 chr11 66765357 66765775 -84017778 + L1M1 LINE L1 4523 4936 -2629 * 288 0 0 0 chr11 66765775 66765807 -84017746 + (A)n Simple_repeat Simple_repeat 1 32 0 1838 149 40 24 chr11 66765907 66766203 -84017350 - AluSq SINE Alu -12 301 1 373 335 59 12 chr11 66766333 66766503 -84017050 + MER5B DNA MER1_type 1 178 0 2441 112 20 6 chr11 66767243 66767601 -84015952 - THE1B LTR MaLR -1 363 1 5892 174 25 15 chr11 66767601 66767694 -84015859 - L1P LINE L1 -1492 4654 4563 2541 128 5 3 chr11 66767694 66768068 -84015485 - THE1C LTR MaLR 0 375 1 5892 174 25 15 chr11 66768068 66768935 -84014618 - L1P LINE L1 -1583 4563 3679 231 61 0 0 chr11 66768935 66768968 -84014585 + (TTG)n Simple_repeat Simple_repeat 3 35 0 5892 174 25 15 chr11 66768968 66769137 -84014416 - L1P LINE L1 -2467 3679 3513 342 0 0 0 chr11 66769156 66769194 -84014359 + (TTA)n Simple_repeat Simple_repeat 2 39 0 5547 239 45 24 chr11 66769209 66771656 -84011897 - L1M2 LINE L1 -4110 2679 4 352 259 29 79 chr11 66773562 66773701 -84009852 - MIR SINE MIR -65 197 66 316 298 19 29 chr11 66773774 66773878 -84009675 - MER69 DNA AcHobo -2423 103 1 306 0 0 0 chr11 66774898 66774932 -84008621 + (TG)n Simple_repeat Simple_repeat 2 35 0 932 264 43 71 chr11 66775114 66775181 -84008372 - L1ME3 LINE L1 -28 6134 6067 2294 128 0 0 chr11 66775181 66775493 -84008060 + AluSx SINE Alu 1 312 0 932 264 43 71 chr11 66775493 66775917 -84007636 - L1ME3 LINE L1 -95 6067 5657 23 68 0 0 chr11 66775933 66775977 -84007576 + AT_rich Low_complexity Low_complexity 1 44 0 1097 222 46 29 chr11 66776481 66776828 -84006725 + L1M1 LINE L1 3266 3618 -3947 191 356 67 31 chr11 66778389 66778614 -84004939 - L3 LINE CR1 -29 1548 1316 328 307 18 18 chr11 66778762 66778876 -84004677 - MER81 DNA DNA 0 114 1 266 317 114 49 chr11 66779545 66779791 -84003762 - MIR SINE MIR 0 262 1 26 64 0 0 chr11 66780599 66780646 -84002907 + AT_rich Low_complexity Low_complexity 1 47 0 1315 170 44 4 chr11 66780646 66780875 -84002678 - AluJb SINE Alu -31 281 44 4872 160 44 42 chr11 66780879 66781092 -84002461 - L1MA6 LINE L1 0 7002 6791 1895 119 58 0 chr11 66781092 66781369 -84002184 - AluY SINE Alu -18 293 1 4872 160 44 42 chr11 66781369 66782325 -84001228 - L1MA6 LINE L1 -211 6791 5828 4358 194 58 12 chr11 66782339 66783429 -84000124 - L1MA6 LINE L1 -2578 4270 3131 255 125 0 0 chr11 66783580 66783620 -83999933 + (T)n Simple_repeat Simple_repeat 1 40 0 337 240 48 0 chr11 66784703 66784828 -83998725 + MER53 DNA DNA 20 150 -39 579 217 40 17 chr11 66784860 66785035 -83998518 - MER53 DNA DNA -10 179 1 351 263 81 0 chr11 66785559 66785658 -83997895 - MIR SINE MIR -60 202 96 374 253 21 91 chr11 66785692 66785878 -83997675 - MER69A DNA AcHobo 0 177 5 242 314 42 8 chr11 66786671 66786789 -83996764 - L2 LINE L2 0 3313 3192 10532 204 63 21 chr11 66787172 66787796 -83995757 + L1PA15 LINE L1 2129 2726 -3439 180 0 0 0 chr11 66787796 66787816 -83995737 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 10532 204 63 21 chr11 66787816 66790198 -83993355 + L1PA15 LINE L1 2726 5355 -810 2158 117 0 0 chr11 66790198 66790505 -83993048 - AluSx SINE Alu 0 307 1 10532 204 63 21 chr11 66790505 66791352 -83992201 + L1PA15 LINE L1 5355 6165 0 705 351 44 16 chr11 66793200 66793567 -83989986 + L1M3c LINE L1 24 400 -5741 978 261 68 11 chr11 66793957 66794242 -83989311 + L1M3c LINE L1 915 1229 -4902 2367 97 0 0 chr11 66794242 66794540 -83989013 + AluSc SINE Alu 1 298 -11 978 261 68 11 chr11 66794540 66794634 -83988919 + L1M3c LINE L1 1229 1316 -4815 * 6312 102 15 9 chr11 66794628 66795651 -83987902 - L1PA10 LINE L1 -22 6146 5128 7305 234 83 14 chr11 66795790 66796150 -83987403 - L1MA6 LINE L1 -4916 1933 1599 2810 52 0 0 chr11 66796150 66796498 -83987055 - L1PA4 LINE L1 0 6155 5808 7305 234 83 14 chr11 66796498 66797941 -83985612 - L1MA6 LINE L1 -5250 1599 7 577 249 63 63 chr11 66797920 66798253 -83985300 - L1ME2 LINE L1 -162 6704 6372 * 296 254 46 23 chr11 66798413 66798543 -83985010 + L1MEc LINE L1 2262 2394 -4002 267 314 0 8 chr11 66798550 66798674 -83984879 + L1M4 LINE L1 4567 4689 -1457 * 17986 82 8 2 chr11 66798672 66802292 -83981261 + L1PA7 LINE L1 2515 6153 -1 631 227 33 123 chr11 66802318 66802684 -83980869 + L1MA9 LINE L1 5942 6274 -38 473 250 14 7 chr11 66802700 66802848 -83980705 + L1MD2 LINE L1 5769 5917 -325 923 196 32 114 chr11 66802857 66803199 -83980354 + L1MD2 LINE L1 6043 6356 -3 255 309 65 0 chr11 66803202 66803341 -83980212 + L1M4 LINE L1 2278 2425 -3721 22 35 0 0 chr11 66803451 66803480 -83980073 + AT_rich Low_complexity Low_complexity 1 29 0 248 325 0 8 chr11 66804646 66804763 -83978790 - AluSp/q SINE Alu 0 303 188 2620 11 0 0 chr11 66804879 66805164 -83978389 - AluYa5 SINE Alu -6 305 21 1578 96 37 26 chr11 66805164 66805434 -83978119 - L1MA2 LINE L1 -179 6125 5853 491 261 72 5 chr11 66805480 66805687 -83977866 - MLT1F1-int LTR MaLR -825 546 326 1787 242 101 12 chr11 66805886 66806403 -83977150 - MLT1F1 LTR MaLR 0 567 5 338 293 43 14 chr11 66806405 66806545 -83977008 + LTR16A LTR ERVL 300 443 -7 885 302 81 20 chr11 66806585 66807271 -83976282 + HERV16 LTR ERVL 1608 2368 -2628 1247 192 4 0 chr11 66807328 66807557 -83975996 - MSTB2 LTR MaLR 0 457 228 414 144 82 10 chr11 66807555 66807652 -83975901 + LTR16A LTR ERVL 250 353 -97 * 308 242 74 11 chr11 66808088 66808183 -83975370 + MLT1K LTR MaLR 481 581 -7 7108 138 2 8 chr11 66808316 66809508 -83974045 + L1P LINE L1 3511 4696 -1450 680 153 8 0 chr11 66809508 66809639 -83973914 + L1P LINE L1 5051 5182 -964 584 254 8 55 chr11 66859657 66859724 -83923829 - L1ME LINE L1 -4895 1489 1420 2162 217 96 39 chr11 66859724 66860296 -83923257 + MER77 LTR ERV1 1 605 0 584 254 8 55 chr11 66860296 66860464 -83923089 - L1ME LINE L1 -4964 1420 1265 591 83 0 83 chr11 66860484 66860580 -83922973 - AluJ/FLAM SINE Alu -223 89 2 2095 271 89 36 chr11 66860584 66861106 -83922447 - L1ME LINE L1 -5009 1363 870 1473 139 167 8 chr11 66861106 66861358 -83922195 - AluJb SINE Alu -10 292 1 2095 271 89 36 chr11 66861358 66861381 -83922172 - L1ME LINE L1 -5502 870 850 2232 115 0 7 chr11 66861381 66861686 -83921867 - AluSg SINE Alu -7 303 1 2095 271 89 36 chr11 66861686 66862129 -83921424 - L1ME LINE L1 -5522 850 322 2496 69 0 22 chr11 66862514 66862832 -83920721 + AluY SINE Alu 1 311 0 318 289 107 5 chr11 66862834 66863021 -83920532 + L1ME3A LINE L1 5691 5896 -274 301 296 119 13 chr11 66863316 66863475 -83920078 - L1ME LINE L1 -305 5816 5641 2162 97 7 17 chr11 66863475 66863775 -83919778 + AluSq SINE Alu 1 297 -16 1758 155 31 24 chr11 66863827 66864118 -83919435 - AluJb SINE Alu -19 293 1 2338 85 3 3 chr11 66864462 66864756 -83918797 - AluSp SINE Alu -19 294 1 313 308 69 82 chr11 66864898 66865057 -83918496 - MER91A DNA MER1_type -35 161 5 2322 99 0 43 chr11 66865299 66865623 -83917930 - AluSg SINE Alu 0 310 1 805 158 0 0 chr11 66865659 66865779 -83917774 + AluJo/FLAM SINE Alu 11 130 -182 2306 94 0 10 chr11 66865781 66866090 -83917463 + AluY SINE Alu 3 308 -3 2450 71 3 3 chr11 66866228 66866523 -83917030 - AluSp SINE Alu -18 295 1 2089 135 0 0 chr11 66866547 66866843 -83916710 - AluSq SINE Alu -17 296 1 59 0 0 0 chr11 66866909 66866968 -83916585 + AT_rich Low_complexity Low_complexity 1 59 0 2071 133 0 7 chr11 66866979 66867272 -83916281 + AluSx SINE Alu 1 291 -21 264 252 0 0 chr11 66867526 66867633 -83915920 + G-rich Low_complexity Low_complexity 1 107 0 279 133 0 0 chr11 66867852 66867897 -83915656 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 375 233 44 18 chr11 66867898 66867991 -83915562 - L1MC4 LINE L1 -1339 6983 6894 2299 70 0 7 chr11 66867991 66868276 -83915277 - AluSc SINE Alu -26 283 1 375 233 44 18 chr11 66868276 66868296 -83915257 - L1MC4 LINE L1 -1428 6894 1973 21 0 0 0 chr11 66868771 66868792 -83914761 + GC_rich Low_complexity Low_complexity 1 21 0 2465 108 146 66 chr11 66868990 66869726 -83913827 + pTR5 LTR ERV1 39 2438 0 307 300 45 9 chr11 66869898 66870008 -83913545 - MIR SINE MIR -134 128 15 703 186 32 134 chr11 66870354 66870433 -83913120 - MLT1A1 LTR MaLR -143 222 137 2462 100 0 0 chr11 66870433 66870743 -83912810 - AluSx SINE Alu -2 310 1 703 186 32 134 chr11 66870743 66870910 -83912643 - MLT1A1 LTR MaLR -228 137 1 1740 177 0 31 chr11 66871495 66871817 -83911736 + AluJb SINE Alu 1 312 0 278 290 40 10 chr11 66871946 66872046 -83911507 + L2 LINE L2 3208 3310 -3 419 298 20 91 chr11 66872339 66872491 -83911062 - MIR SINE MIR -24 238 102 2312 96 17 3 chr11 66872491 66872792 -83910761 + AluSx SINE Alu 5 309 -3 419 298 20 91 chr11 66872792 66872837 -83910716 - MIR SINE MIR -160 102 55 2124 162 13 3 chr11 66873016 66873392 -83910161 - MER67B LTR ERV1 0 661 282 21 57 0 0 chr11 66873459 66873494 -83910059 + AT_rich Low_complexity Low_complexity 1 35 0 897 142 126 42 chr11 66873505 66873554 -83909999 - MER2 DNA MER2_type -139 206 163 1830 130 0 57 chr11 66873554 66873855 -83909698 + AluJb SINE Alu 12 295 -17 897 142 126 42 chr11 66873855 66873995 -83909558 - MER2 DNA MER2_type -182 163 1 1488 159 33 0 chr11 66874000 66874271 -83909282 - MER67B LTR ERV1 -381 280 1 835 221 10 15 chr11 66875065 66875269 -83908284 + Charlie2a DNA MER1_type 1464 1666 -1196 236 202 50 76 chr11 66875258 66875377 -83908176 + Charlie2a DNA MER1_type 2702 2817 -45 * 1857 149 20 24 chr11 66875386 66875681 -83907872 + AluJb SINE Alu 1 294 -18 856 227 13 53 chr11 66875700 66875925 -83907628 + MER58A DNA MER1_type 1 216 -8 419 185 38 7 chr11 66876166 66876270 -83907283 + MIR SINE MIR 72 175 -63 262 227 134 41 chr11 66877069 66877166 -83906387 + MIR3 SINE MIR 3 108 -100 1480 202 3 14 chr11 66877174 66877461 -83906092 + AluJb SINE Alu 21 304 -8 354 358 67 17 chr11 66877541 66877720 -83905833 + MIR3 SINE MIR 12 199 -9 225 358 24 24 chr11 66877748 66877871 -83905682 - MIR SINE MIR -134 128 6 203 178 67 0 chr11 66878094 66878139 -83905414 - L2 LINE L2 -4 3309 3262 354 295 121 13 chr11 66878812 66878961 -83904592 - MIR SINE MIR -83 179 15 1306 137 8 0 chr11 66879273 66879498 -83904055 + L1PB1 LINE L1 5808 6034 -117 2023 170 0 3 chr11 66879498 66879809 -83903744 + AluSx SINE Alu 1 310 -2 241 236 83 14 chr11 66879816 66879888 -83903665 + MLT1A2 LTR MaLR 157 233 -141 307 300 45 9 chr11 66880233 66880343 -83903210 + MIR SINE MIR 15 128 -134 6449 130 163 77 chr11 66880518 66882081 -83901472 - pTR5 LTR ERV1 0 2438 743 1899 158 3 3 chr11 66882681 66882978 -83900575 - AluSx SINE Alu -15 297 1 387 195 115 0 chr11 66883075 66883162 -83900391 + L1MC4 LINE L1 6607 6703 -1339 1425 112 32 88 chr11 66883389 66883472 -83900081 - AluJo SINE Alu -75 237 151 1877 178 130 20 chr11 66883472 66883910 -83899643 - LTR19A LTR ERV1 0 486 1 1425 112 32 88 chr11 66883910 66884077 -83899476 - AluJo SINE Alu -161 151 1 847 153 0 0 chr11 66884129 66884247 -83899306 - FLAM_A SINE Alu -11 131 14 208 303 92 37 chr11 66885465 66885574 -83897979 - MIR3 SINE MIR -45 163 49 356 245 90 66 chr11 66886458 66886670 -83896883 + L2 LINE L2 2246 2462 -852 363 253 0 0 chr11 66886674 66886749 -83896804 + MIR SINE MIR 24 98 -164 372 284 84 7 chr11 66886959 66887114 -83896439 - MIR3 SINE MIR -21 187 21 1289 102 10 36 chr11 66887605 66887801 -83895752 - AluY SINE Alu -8 303 113 314 276 19 32 chr11 66887836 66887992 -83895561 - L1ME LINE L1 -297 5824 5671 1502 130 8 45 chr11 66888500 66888746 -83894807 + AluJb SINE Alu 1 237 -75 967 144 92 12 chr11 66888746 66888919 -83894634 - MER1B DNA MER1_type -110 187 1 507 211 0 0 chr11 66890489 66890584 -83892969 + AluJb SINE Alu 217 311 -1 2216 109 3 3 chr11 66890615 66890909 -83892644 + AluSc SINE Alu 1 294 -15 460 218 18 61 chr11 66891252 66891417 -83892136 - AluSg/x SINE Alu -11 299 142 1540 113 0 5 chr11 66891853 66892065 -83891488 + AluSg/x SINE Alu 97 307 -5 685 122 23 30 chr11 66892065 66892196 -83891357 + L1PB1 LINE L1 6022 6151 0 577 171 32 124 chr11 66892212 66892429 -83891124 + L1MC5 LINE L1 6855 7051 -910 1263 204 0 17 chr11 66892628 66892858 -83890695 - AluJb SINE Alu -2 310 85 331 239 174 110 chr11 66892939 66893157 -83890396 + MIR SINE MIR 31 262 0 2227 105 7 3 chr11 66893830 66894136 -83889417 + AluY SINE Alu 1 307 -4 2059 117 7 0 chr11 66895787 66896092 -83887461 + AluSx SINE Alu 1 307 0 1711 176 85 46 chr11 66896226 66896267 -83887286 + L1MB8 LINE L1 5668 5706 -472 1628 212 93 65 chr11 66896267 66896711 -83886842 + MLT2B1 LTR ERVL 2 463 -57 2333 75 0 23 chr11 66896711 66897018 -83886535 + AluY SINE Alu 1 300 -11 1628 212 93 65 chr11 66897018 66897077 -83886476 + MLT2B1 LTR ERVL 463 519 -1 1711 176 85 46 chr11 66897077 66897495 -83886058 + L1MB8 LINE L1 5706 6145 -33 372 141 115 39 chr11 66897496 66897574 -83885979 + LTR43 LTR ERV1 1 84 -518 2504 160 52 4 chr11 66897575 66898056 -83885497 + LTR43 LTR ERV1 26 529 -73 610 206 22 0 chr11 66898052 66898188 -83885365 + LTR43 LTR ERV1 464 602 0 * 21 0 0 0 chr11 66898301 66898322 -83885231 + AT_rich Low_complexity Low_complexity 1 21 0 282 275 96 69 chr11 66898354 66898566 -83884987 - L1ME3A LINE L1 -207 5963 5739 1829 124 55 66 chr11 66898566 66898790 -83884763 - THE1C LTR MaLR 0 375 154 2304 85 0 0 chr11 66898790 66899094 -83884459 + AluSc SINE Alu 1 304 0 1829 124 55 66 chr11 66899094 66899247 -83884306 - THE1C LTR MaLR -221 154 1 282 275 96 69 chr11 66899247 66899325 -83884228 - L1ME3A LINE L1 -431 5739 5665 320 307 74 63 chr11 66899330 66899449 -83884104 - L1ME3A LINE L1 -992 5154 5031 2419 89 3 3 chr11 66899449 66899753 -83883800 + AluSx SINE Alu 1 304 -8 320 307 74 63 chr11 66899753 66899822 -83883731 - L1ME3A LINE L1 -1115 5031 4964 569 149 175 26 chr11 66899903 66900017 -83883536 - AluJb SINE Alu -179 133 3 1163 209 75 25 chr11 66900025 66900307 -83883246 + MER58B DNA MER1_type 45 340 -1 758 268 59 42 chr11 66900316 66900741 -83882812 - L1ME3A LINE L1 -1250 4896 4465 284 315 69 24 chr11 66900772 66901061 -83882492 - L1ME3A LINE L1 -2586 3560 3259 246 192 0 0 chr11 66901165 66901217 -83882336 + CT-rich Low_complexity Low_complexity 2 53 0 587 159 0 0 chr11 66901225 66901313 -83882240 - AluJ/FLAM SINE Alu -219 93 6 783 271 77 9 chr11 66901322 66901662 -83881891 - L1ME3A LINE L1 -3106 3040 2678 518 127 38 0 chr11 66901781 66901860 -83881693 + MSTC LTR MaLR 3 84 -344 2160 74 0 7 chr11 66901860 66902186 -83881367 + AluSx SINE Alu 1 324 0 680 211 74 6 chr11 66902203 66902378 -83881175 - L1ME1 LINE L1 -108 6058 5872 25 0 0 0 chr11 66902418 66902443 -83881110 + AT_rich Low_complexity Low_complexity 1 25 0 1749 160 3 10 chr11 66902482 66902782 -83880771 + AluJb SINE Alu 1 298 -14 212 286 0 0 chr11 66903840 66903910 -83879643 + (CA)n Simple_repeat Simple_repeat 1 70 0 562 294 85 15 chr11 66904116 66904317 -83879236 + MIR SINE MIR 35 249 -13 3890 91 23 15 chr11 66904916 66905152 -83878401 + MER1A DNA MER1_type 1 234 -2468 1829 138 58 64 chr11 66905152 66905219 -83878334 - THE1C LTR MaLR 0 375 309 2395 66 0 7 chr11 66905219 66905522 -83878031 - AluY SINE Alu -10 301 1 1829 138 58 64 chr11 66905522 66905656 -83877897 - THE1C LTR MaLR -66 309 176 1971 140 0 0 chr11 66905656 66905949 -83877604 - AluSq SINE Alu -18 295 3 1829 138 58 64 chr11 66905949 66906123 -83877430 - THE1C LTR MaLR -199 176 1 3890 91 23 15 chr11 66906123 66906411 -83877142 + MER1A DNA MER1_type 234 529 0 198 0 0 0 chr11 66906500 66906522 -83877031 + (T)n Simple_repeat Simple_repeat 1 22 0 526 160 0 28 chr11 66906622 66906728 -83876825 - AluSq/x SINE Alu -206 107 5 2278 138 47 26 chr11 66906730 66907157 -83876396 - L1MA8 LINE L1 0 6291 5856 27 0 0 0 chr11 66907204 66907231 -83876322 + AT_rich Low_complexity Low_complexity 1 27 0 636 93 0 0 chr11 66907238 66907324 -83876229 - AluJ/FLAM SINE Alu -226 86 1 588 163 0 0 chr11 66907337 66907429 -83876124 + MER34 LTR ERV1 324 415 -127 2361 41 7 3 chr11 66907463 66907757 -83875796 + AluY SINE Alu 1 295 -16 3386 83 107 30 chr11 66907758 66908290 -83875263 - LTR61 LTR ERV1 -22 573 1 403 95 16 0 chr11 66908290 66908353 -83875200 + MER34 LTR ERV1 410 473 -69 1849 136 152 0 chr11 66908368 66908684 -83874869 + MSTA LTR MaLR 1 364 -64 2155 114 0 0 chr11 66908684 66908983 -83874570 - AluSx SINE Alu -13 299 1 1845 124 0 0 chr11 66909337 66909594 -83873959 - AluSx SINE Alu -55 257 1 462 18 0 0 chr11 66909705 66909760 -83873793 + (TG)n Simple_repeat Simple_repeat 2 56 0 1059 110 13 7 chr11 66909817 66909972 -83873581 - L1PA11 LINE L1 0 6174 6019 1536 181 23 64 chr11 66910305 66910348 -83873205 - MER58B DNA MER1_type -2080 340 297 1950 116 13 3 chr11 66910348 66910650 -83872903 - AluSx SINE Alu -7 305 1 1536 181 23 64 chr11 66910650 66910949 -83872604 - MER58B DNA MER1_type -2123 297 12 2057 102 14 7 chr11 66911161 66911454 -83872099 - AluSx SINE Alu -17 295 1 2097 110 0 13 chr11 66911457 66911766 -83871787 - AluSq SINE Alu -8 305 1 40 0 0 0 chr11 66912090 66912130 -83871423 + AT_rich Low_complexity Low_complexity 1 40 0 1801 96 8 0 chr11 66912152 66912402 -83871151 + AluY SINE Alu 47 298 -13 38 51 0 0 chr11 66912402 66912461 -83871092 + AT_rich Low_complexity Low_complexity 1 59 0 2195 74 0 3 chr11 66912554 66912879 -83870674 + AluSx SINE Alu 1 324 0 680 211 74 6 chr11 66912896 66913071 -83870482 - L1ME1 LINE L1 -108 6058 5872 25 0 0 0 chr11 66913111 66913136 -83870417 + AT_rich Low_complexity Low_complexity 1 25 0 1749 160 3 10 chr11 66913175 66913475 -83870078 + AluJb SINE Alu 1 298 -14 212 286 0 0 chr11 66914531 66914601 -83868952 + (CA)n Simple_repeat Simple_repeat 1 70 0 562 294 85 15 chr11 66914807 66915008 -83868545 + MIR SINE MIR 35 249 -13 3890 91 23 15 chr11 66915607 66915843 -83867710 + MER1A DNA MER1_type 1 234 -2468 1829 138 58 64 chr11 66915843 66915910 -83867643 - THE1C LTR MaLR 0 375 309 2395 66 0 7 chr11 66915910 66916213 -83867340 - AluY SINE Alu -10 301 1 1829 138 58 64 chr11 66916213 66916347 -83867206 - THE1C LTR MaLR -66 309 176 1971 140 0 0 chr11 66916347 66916640 -83866913 - AluSq SINE Alu -18 295 3 1829 138 58 64 chr11 66916640 66916814 -83866739 - THE1C LTR MaLR -199 176 1 3890 91 23 15 chr11 66916814 66917102 -83866451 + MER1A DNA MER1_type 234 529 0 2334 59 10 3 chr11 66917191 66917497 -83866056 - AluY SINE Alu -3 308 1 214 318 45 0 chr11 66917590 66917656 -83865897 + MIR SINE MIR 117 185 -77 1356 253 56 45 chr11 66917682 66918144 -83865409 - L1ME3 LINE L1 -3 6159 5693 2012 93 4 0 chr11 66918144 66918422 -83865131 - AluY SINE Alu -8 303 25 2049 107 0 4 chr11 66918422 66918700 -83864853 - AluSx SINE Alu -33 279 1 2105 87 4 0 chr11 66918702 66918977 -83864576 - AluSx SINE Alu -14 298 23 954 272 95 72 chr11 66918992 66919793 -83863760 - HAL1 LINE L1 -1633 874 56 1216 226 261 29 chr11 66919863 66920033 -83863520 - L2 LINE L2 -33 3280 3151 2124 77 28 0 chr11 66920033 66920319 -83863234 + AluSp SINE Alu 1 294 -19 1216 226 261 29 chr11 66920319 66920831 -83862722 - L2 LINE L2 -162 3151 2442 22 0 0 0 chr11 66921022 66921044 -83862509 + AT_rich Low_complexity Low_complexity 1 22 0 1230 183 38 12 chr11 66921076 66921316 -83862237 + MER58 DNA MER1_type 9 254 -2166 1487 136 59 49 chr11 66921341 66921472 -83862081 + AluJo SINE Alu 1 129 -183 2012 136 13 0 chr11 66921472 66921773 -83861780 + AluSx SINE Alu 6 310 -2 1487 136 59 49 chr11 66921773 66921928 -83861625 + AluJo SINE Alu 129 290 -22 300 83 0 0 chr11 66921942 66921990 -83861563 + (TC)n Simple_repeat Simple_repeat 2 49 0 1840 127 0 0 chr11 66922159 66922419 -83861134 - AluSx SINE Alu -52 260 1 375 119 0 0 chr11 66922420 66922479 -83861074 + MSTA LTR MaLR 359 417 -11 1174 197 29 29 chr11 66922479 66922758 -83860795 - AluJb SINE Alu -33 279 1 416 141 31 0 chr11 66922758 66922822 -83860731 + MER34 LTR ERV1 457 522 -20 1856 141 0 17 chr11 66922948 66923246 -83860307 + AluSx SINE Alu 1 293 -19 288 262 102 57 chr11 66923390 66923534 -83860019 + MIR SINE MIR 23 170 -38 2200 79 7 13 chr11 66923546 66923850 -83859703 + AluSc SINE Alu 1 302 -7 1716 72 18 0 chr11 66923907 66924159 -83859394 + AluY SINE Alu 57 312 0 2028 103 13 27 chr11 66924818 66925119 -83858434 - AluSx SINE Alu -15 297 1 183 42 0 0 chr11 66925375 66925399 -83858154 + (T)n Simple_repeat Simple_repeat 1 24 0 2273 79 20 0 chr11 66925804 66926108 -83857445 + AluSg SINE Alu 1 310 0 2066 126 0 0 chr11 66926118 66926428 -83857125 + AluSx SINE Alu 1 310 -2 1332 180 7 35 chr11 66927636 66927925 -83855628 - AluJo SINE Alu -20 292 12 715 140 15 73 chr11 66927932 66928068 -83855485 - FLAM_C SINE Alu -5 128 1 328 290 23 38 chr11 66929153 66929284 -83854269 + MER5A DNA MER1_type 60 188 -1 37 52 0 0 chr11 66929613 66929671 -83853882 + AT_rich Low_complexity Low_complexity 1 58 0 1790 143 14 0 chr11 66929910 66930196 -83853357 + AluSg SINE Alu 10 299 -11 2103 111 3 3 chr11 66930293 66930599 -83852954 + AluSx SINE Alu 1 306 -6 2260 80 0 19 chr11 66932745 66933056 -83850497 + AluSc SINE Alu 1 305 -4 789 186 90 0 chr11 66933935 66934080 -83849473 + FRAM SINE Alu 1 155 -21 195 139 0 0 chr11 66934084 66934120 -83849433 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 1920 126 3 44 chr11 66934327 66934645 -83848908 + AluSq SINE Alu 1 305 -8 2119 106 0 20 chr11 66934712 66935015 -83848538 + AluSg SINE Alu 1 297 -13 2157 95 0 0 chr11 66935898 66936192 -83847361 + AluSx SINE Alu 1 294 -18 221 0 0 33 chr11 66937019 66937049 -83846504 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 1296 174 106 29 chr11 66937609 66937884 -83845669 - AluSx SINE Alu -6 296 1 59 0 0 0 chr11 66937894 66937953 -83845600 + AT_rich Low_complexity Low_complexity 1 59 0 854 117 16 0 chr11 66938019 66938147 -83845406 + AluSq/x SINE Alu 1 130 -183 22 0 0 0 chr11 66938258 66938280 -83845273 + GC_rich Low_complexity Low_complexity 1 22 0 192 97 0 0 chr11 66938499 66938530 -83845023 + (CGGGG)n Simple_repeat Simple_repeat 1 31 0 2150 74 0 0 chr11 66939046 66939365 -83844188 - AluY SINE Alu 0 319 1 304 204 11 97 chr11 66939370 66939463 -83844090 + MIR SINE MIR 177 261 -1 637 189 50 136 chr11 66939497 66939798 -83843755 - MER97c DNA MER1_type? -4 1086 812 819 188 0 0 chr11 66940184 66940317 -83843236 + AluJ SINE Alu 1 133 -169 2316 68 3 0 chr11 66940346 66940639 -83842914 - AluSp SINE Alu -19 294 1 1738 206 48 5 chr11 66940828 66941222 -83842331 - MER97c DNA MER1_type? -605 485 75 805 181 29 0 chr11 66941226 66941397 -83842156 + AluJ SINE Alu 137 312 0 281 294 98 80 chr11 66942031 66942317 -83841236 - L2 LINE L2 -51 3221 2931 291 222 44 44 chr11 66942420 66942510 -83841043 + MIR SINE MIR 56 145 -117 252 252 165 31 chr11 66942960 66943087 -83840466 - MIR SINE MIR -54 208 65 842 300 53 12 chr11 66943462 66943709 -83839844 - MIR SINE MIR 0 262 6 279 247 68 0 chr11 66944105 66944178 -83839375 + MIR SINE MIR 69 146 -62 199 100 33 0 chr11 66944258 66944288 -83839265 + MER5B DNA MER1_type 18 48 -130 22 0 0 0 chr11 66944289 66944311 -83839242 + AT_rich Low_complexity Low_complexity 1 22 0 2174 68 14 0 chr11 66944311 66944591 -83838962 - AluY SINE Alu -27 284 1 212 211 35 18 chr11 66944591 66944648 -83838905 - MER5B DNA MER1_type -33 145 88 315 281 0 79 chr11 66944935 66944962 -83838591 + L2 LINE L2 1806 1834 -1480 769 130 15 30 chr11 66944962 66945112 -83838441 - FLAM_A SINE Alu 0 133 4 315 281 0 79 chr11 66945112 66945198 -83838355 + L2 LINE L2 1834 1910 -1404 916 228 138 41 chr11 66945282 66945813 -83837740 + L2 LINE L2 2379 2960 -354 360 0 0 0 chr11 66946032 66946072 -83837481 + (TG)n Simple_repeat Simple_repeat 2 41 0 853 66 33 0 chr11 66946072 66946193 -83837360 - AluSq/x SINE Alu -187 125 1 2423 68 0 0 chr11 66946646 66946957 -83836596 + AluY SINE Alu 1 311 0 2101 95 7 16 chr11 66947081 66947386 -83836167 - AluSx SINE Alu -10 302 1 297 248 19 96 chr11 66947437 66947594 -83835959 - L1ME4a LINE L1 -13 6108 5964 2005 123 7 0 chr11 66947725 66948017 -83835536 - AluSx SINE Alu -18 294 1 1845 124 0 0 chr11 66948371 66948628 -83834925 - AluSx SINE Alu -55 257 1 246 32 0 0 chr11 66948739 66948770 -83834783 + (TG)n Simple_repeat Simple_repeat 2 32 0 1059 110 13 7 chr11 66948827 66948982 -83834571 - L1PA11 LINE L1 0 6174 6019 1536 181 23 64 chr11 66949315 66949358 -83834195 - MER58B DNA MER1_type -2080 340 297 2081 112 3 3 chr11 66949358 66949663 -83833890 - AluSx SINE Alu -7 305 1 1536 181 23 64 chr11 66949663 66949962 -83833591 - MER58B DNA MER1_type -2123 297 12 2211 99 14 7 chr11 66950174 66950467 -83833086 - AluSx SINE Alu -17 295 1 2212 113 0 13 chr11 66950470 66950781 -83832772 - AluSq SINE Alu -6 307 1 40 0 0 0 chr11 66951105 66951145 -83832408 + AT_rich Low_complexity Low_complexity 1 40 0 1981 92 0 0 chr11 66951167 66951418 -83832135 + AluY SINE Alu 47 297 -14 33 43 0 0 chr11 66951430 66951477 -83832076 + AT_rich Low_complexity Low_complexity 1 47 0 2321 74 0 3 chr11 66951570 66951895 -83831658 + AluSx SINE Alu 1 324 0 679 211 74 6 chr11 66951912 66952087 -83831466 - L1ME1 LINE L1 -108 6058 5872 25 0 0 0 chr11 66952127 66952152 -83831401 + AT_rich Low_complexity Low_complexity 1 25 0 1864 160 3 10 chr11 66952191 66952491 -83831062 + AluJb SINE Alu 1 298 -14 212 286 0 0 chr11 66953549 66953619 -83829934 + (CA)n Simple_repeat Simple_repeat 1 70 0 481 294 85 15 chr11 66953825 66954026 -83829527 + MIR SINE MIR 35 249 -13 3873 91 23 15 chr11 66954625 66954861 -83828692 + MER1A DNA MER1_type 1 234 -2468 1824 138 58 64 chr11 66954861 66954928 -83828625 - THE1C LTR MaLR 0 375 309 2516 69 0 7 chr11 66954928 66955231 -83828322 - AluY SINE Alu -10 301 1 1824 138 58 64 chr11 66955231 66955365 -83828188 - THE1C LTR MaLR -66 309 176 2094 140 0 0 chr11 66955365 66955658 -83827895 - AluSq SINE Alu -18 295 3 1824 138 58 64 chr11 66955658 66955832 -83827721 - THE1C LTR MaLR -199 176 1 3873 91 23 15 chr11 66955832 66956120 -83827433 + MER1A DNA MER1_type 234 529 0 225 0 0 0 chr11 66956209 66956234 -83827319 + (T)n Simple_repeat Simple_repeat 1 25 0 563 229 112 19 chr11 66956367 66956539 -83827014 - L1ME1 LINE L1 -281 5881 5686 2403 95 0 0 chr11 66956539 66956843 -83826710 - AluSx SINE Alu -8 304 1 563 229 112 19 chr11 66956843 66956875 -83826678 - L1ME1 LINE L1 -476 5686 5658 968 302 185 50 chr11 66956935 66957972 -83825581 + L2 LINE L2 1542 2869 -444 1891 132 3 40 chr11 66957972 66958276 -83825277 + AluSx SINE Alu 1 293 -19 968 302 185 50 chr11 66958276 66958765 -83824788 + L2 LINE L2 2869 3291 -22 745 286 39 0 chr11 66959025 66959256 -83824297 - MIR SINE MIR -21 241 2 2096 135 0 29 chr11 66959376 66959688 -83823865 + AluSx SINE Alu 1 303 -9 211 310 35 0 chr11 66959756 66959843 -83823710 - MIR SINE MIR -93 115 26 551 207 83 0 chr11 66959878 66959999 -83823554 - MER96 DNA MER1_type? -44 131 1 2023 164 0 0 chr11 66960448 66960752 -83822801 - AluJb SINE Alu -8 304 1 183 258 45 0 chr11 66961281 66961347 -83822206 - MIR SINE MIR -59 149 81 183 217 193 12 chr11 66962043 66962126 -83821427 - MIR SINE MIR -79 183 86 276 300 0 36 chr11 66962333 66962443 -83821110 + T-rich Low_complexity Low_complexity 3 108 0 376 286 111 29 chr11 66962594 66962765 -83820788 + MIR SINE MIR 8 192 -70 189 0 0 0 chr11 66962854 66962875 -83820678 + (T)n Simple_repeat Simple_repeat 1 21 0 2255 110 0 0 chr11 66963483 66963773 -83819780 + AluSx SINE Alu 1 290 -22 753 179 0 15 chr11 66963787 66963921 -83819632 - FLAM_C SINE Alu -1 132 1 598 324 0 0 chr11 66963945 66964118 -83819435 - HAL1 LINE L1 -661 1846 1674 1151 133 0 17 chr11 66964132 66964313 -83819240 + AluSg/x SINE Alu 133 310 0 1618 189 164 18 chr11 66964324 66964740 -83818813 - HAL1 LINE L1 -851 1656 1173 1894 180 0 0 chr11 66964740 66965051 -83818502 - AluSx SINE Alu -1 311 1 1618 189 164 18 chr11 66965051 66965068 -83818485 - HAL1 LINE L1 -1334 1173 1160 2269 92 0 0 chr11 66965419 66965703 -83817850 + AluSx SINE Alu 1 284 -28 258 105 0 0 chr11 66965703 66965741 -83817812 + (CA)n Simple_repeat Simple_repeat 2 39 0 1148 186 0 0 chr11 66965741 66965918 -83817635 - AluJo SINE Alu -135 177 1 1142 178 43 0 chr11 66966264 66966472 -83817081 - MER20 DNA MER1_type -2 217 1 2321 81 10 7 chr11 66966530 66966826 -83816727 + AluSc SINE Alu 1 297 -12 2409 61 19 22 chr11 66967043 66967354 -83816199 + AluY SINE Alu 1 310 -1 1156 111 89 2 chr11 66967626 66967820 -83815733 - THE1B LTR MaLR -146 209 1 3006 106 35 22 chr11 66968309 66968772 -83814781 - L1PA16 LINE L1 -9 6157 5689 2522 59 3 34 chr11 66968774 66969095 -83814458 + AluY SINE Alu 1 311 0 24 53 0 0 chr11 66969470 66969508 -83814045 + AT_rich Low_complexity Low_complexity 1 38 0 2255 100 3 0 chr11 66970453 66970743 -83812810 - AluSg SINE Alu -19 291 1 616 277 59 68 chr11 66970964 66971404 -83812149 - HAL1 LINE L1 -387 2120 1685 1763 211 53 70 chr11 66971499 66971700 -83811853 - MLT1D LTR MaLR 0 505 302 4599 164 66 47 chr11 66971700 66972751 -83810802 - MER11C LTR ERVK 0 1071 1 1763 211 53 70 chr11 66972751 66972913 -83810640 - MLT1D LTR MaLR -203 302 151 2444 85 7 0 chr11 66972913 66973220 -83810333 - AluSg SINE Alu -1 309 1 1763 211 53 70 chr11 66973220 66973367 -83810186 - MLT1D LTR MaLR -354 151 3 1942 207 30 55 chr11 66973367 66973709 -83809844 - HAL1 LINE L1 -646 1861 1535 7759 25 5 2 chr11 66973709 66975095 -83808458 - L1PA4 LINE L1 0 6155 4767 1942 207 30 55 chr11 66975095 66975279 -83808274 - HAL1 LINE L1 -972 1535 1348 2271 110 3 3 chr11 66975286 66975594 -83807959 - AluSx SINE Alu -4 308 1 234 265 0 0 chr11 66975597 66975665 -83807888 + T-rich Low_complexity Low_complexity 1 68 0 287 57 0 0 chr11 66975836 66975871 -83807682 - U2 snRNA snRNA -153 35 1 258 114 0 0 chr11 66975942 66975977 -83807576 - U2 snRNA snRNA -153 35 1 426 212 80 15 chr11 66975979 66976116 -83807437 - HAL1 LINE L1 -1542 965 820 2260 96 10 7 chr11 66976126 66976428 -83807125 + AluSq SINE Alu 1 303 -10 1612 169 11 7 chr11 66976982 66977254 -83806299 - AluSx SINE Alu -39 273 1 913 247 100 49 chr11 66977324 66977693 -83805860 - HAL1 LINE L1 -1702 805 418 342 257 40 14 chr11 66977716 66977930 -83805623 - HAL1 LINE L1 -2181 326 23 389 239 34 43 chr11 66978038 66978155 -83805398 - L2 LINE L2 -2 3270 3155 373 308 105 25 chr11 66980142 66980428 -83803125 + L1MEc LINE L1 2061 2369 -4027 404 216 34 11 chr11 66980431 66980519 -83803034 + AluJo SINE Alu 122 211 -101 4863 102 1 21 chr11 66980622 66981349 -83802204 + HERVH LTR ERV1 2283 2995 -4718 1002 108 7 0 chr11 66981328 66981476 -83802077 + HERVH LTR ERV1 3140 3288 -4425 * 3497 113 0 6 chr11 66981468 66981973 -83801580 + HERVH LTR ERV1 3492 3993 -3720 1312 105 16 0 chr11 66981975 66982165 -83801388 + HERVH LTR ERV1 4488 4680 -3033 * 14405 78 11 3 chr11 66982151 66984080 -83799473 + HERVH LTR ERV1 5769 7713 0 3270 78 9 16 chr11 66984080 66984531 -83799022 + LTR7 LTR ERV1 1 448 -2 902 147 47 21 chr11 66984533 66984724 -83798829 - L1P LINE L1 -2843 3303 3108 3864 128 38 2 chr11 66984739 66985318 -83798235 - L1P3 LINE L1 -5856 605 6 189 258 197 0 chr11 66988141 66988207 -83795346 + L3 LINE CR1 1437 1515 -62 207 250 0 0 chr11 66988277 66988321 -83795232 + L2 LINE L2 3210 3253 -19 233 364 0 25 chr11 66988914 66989035 -83794518 - MIR SINE MIR -61 147 30 2317 93 0 3 chr11 66989399 66989688 -83793865 + AluSc SINE Alu 1 288 -21 2259 100 3 3 chr11 66990020 66990310 -83793243 + AluSx SINE Alu 1 290 -22 294 200 0 29 chr11 66990319 66990389 -83793164 - Charlie8 DNA MER1_type -2266 151 84 378 0 0 0 chr11 66990395 66990437 -83793116 + (TG)n Simple_repeat Simple_repeat 2 43 0 1903 166 6 13 chr11 66990534 66990848 -83792705 + AluJb SINE Alu 1 312 0 242 316 31 20 chr11 66990855 66990953 -83792600 - MIR3 SINE MIR -95 113 15 471 249 62 67 chr11 66993703 66993896 -83789657 + LTR41 LTR ERVL 2 193 -580 369 0 0 0 chr11 66994128 66994169 -83789384 + (TG)n Simple_repeat Simple_repeat 1 41 0 192 97 0 0 chr11 66994169 66994200 -83789353 + (GA)n Simple_repeat Simple_repeat 2 32 0 2132 133 0 10 chr11 66994829 66995130 -83788423 + AluSx SINE Alu 1 298 -14 2744 75 65 5 chr11 66996842 66997240 -83786313 + L1PA11 LINE L1 5753 6174 0 227 253 325 0 chr11 66997349 66997432 -83786121 - L1M4 LINE L1 -305 5942 5833 * 1396 237 106 5 chr11 66997429 66997843 -83785710 - L1M4 LINE L1 -1434 4781 4326 2060 111 0 46 chr11 66997848 66998155 -83785398 + AluSx SINE Alu 3 295 -17 811 201 0 0 chr11 66998176 66998315 -83785238 + Tigger1 DNA MER2_type 1 139 -2279 * 1357 140 23 0 chr11 66998311 66998525 -83785028 + Tigger1 DNA MER2_type 2200 2418 0 6120 237 62 19 chr11 66998564 66998733 -83784820 - L1MEc LINE L1 -2129 4086 3926 1714 155 52 0 chr11 66998733 66999024 -83784529 - AluSx SINE Alu -6 306 1 6120 237 62 19 chr11 66999024 67001147 -83782406 - L1MEc LINE L1 -2289 3926 1739 2672 261 62 23 chr11 67001152 67001192 -83782361 - L1M4c LINE L1 -4424 2714 2677 21 0 0 0 chr11 67001192 67001213 -83782340 + AT_rich Low_complexity Low_complexity 1 21 0 2672 261 62 23 chr11 67001213 67002383 -83781170 - L1M4c LINE L1 -4461 2677 1258 191 36 36 0 chr11 67002383 67002411 -83781142 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2672 261 62 23 chr11 67002411 67002483 -83781070 - L1M4c LINE L1 -5880 1258 1190 2334 100 3 0 chr11 67002489 67002798 -83780755 - AluSg SINE Alu 0 310 1 379 255 49 117 chr11 67002943 67003190 -83780363 - L1M4c LINE L1 -5871 984 755 518 276 82 71 chr11 67003238 67003347 -83780206 - L1M4c LINE L1 -6578 281 175 2157 73 35 3 chr11 67003347 67003636 -83779917 - AluY SINE Alu -13 298 1 518 276 82 71 chr11 67003636 67003794 -83779759 - L1M4c LINE L1 -6684 175 11 382 241 0 0 chr11 67003861 67003940 -83779613 - MIR SINE MIR -77 131 53 563 185 269 0 chr11 67005604 67005734 -83777819 - MER5B DNA MER1_type -3 175 11 1269 145 88 8 chr11 67005921 67006183 -83777370 - L1PBa LINE L1 -4787 2076 1794 2072 130 0 0 chr11 67006183 67006489 -83777064 + AluSx SINE Alu 1 306 0 3921 25 0 2 chr11 67006658 67007093 -83776460 + L1PA4 LINE L1 5719 6152 -3 325 333 16 8 chr11 67007095 67007221 -83776332 + L1 LINE L1 1048 1174 -4967 4332 186 28 9 chr11 67007231 67008187 -83775366 + L1 LINE L1 3310 4283 -1927 3802 146 64 114 chr11 67008259 67008854 -83774699 - L1MA4A LINE L1 -4 6299 5792 192 40 0 0 chr11 67008854 67008879 -83774674 + (CA)n Simple_repeat Simple_repeat 1 25 0 3802 146 64 114 chr11 67008879 67009433 -83774120 - L1MA4A LINE L1 -511 5792 5212 446 173 2 4 chr11 67009436 67009531 -83774022 - L1M LINE L1 -875 5428 5335 14700 149 54 26 chr11 67009968 67012617 -83770936 + L1P LINE L1 11 2732 -3414 35763 86 30 1 chr11 67012621 67017478 -83766075 + L1P LINE L1 11 5005 -1141 43579 36 23 0 chr11 67017478 67023133 -83760420 + L1P1 LINE L1 1 5787 -368 2058 143 0 7 chr11 67023234 67023535 -83760018 - AluSx SINE Alu -13 299 1 672 175 7 29 chr11 67023546 67023683 -83759870 + AluSg/x SINE Alu 160 293 -17 528 185 11 0 chr11 67023774 67023866 -83759687 - Tigger7 DNA MER2_type -1 2486 2394 * 936 163 58 17 chr11 67023865 67024037 -83759516 - Tigger7 DNA MER2_type -472 261 83 493 152 0 0 chr11 67024310 67024376 -83759177 + AluS SINE Alu 3 68 -244 441 100 0 0 chr11 67024389 67024449 -83759104 - Alu SINE Alu -256 62 3 318 262 177 0 chr11 67024460 67024572 -83758981 - MIR SINE MIR -63 145 14 1474 130 84 21 chr11 67024679 67024964 -83758589 + AluSx SINE Alu 1 303 -9 548 207 92 18 chr11 67024975 67025139 -83758414 + L2 LINE L2 3138 3313 0 447 222 130 0 chr11 67025662 67025770 -83757783 + MIR SINE MIR 21 142 -120 333 237 151 11 chr11 67025999 67026092 -83757461 - L2 LINE L2 -29 3243 3138 187 262 66 0 chr11 67026204 67026265 -83757288 + MIR SINE MIR 89 153 -109 316 103 21 0 chr11 67026405 67026464 -83757089 + FLAM_A SINE Alu 53 93 -40 1906 131 0 13 chr11 67026464 67026769 -83756784 + AluSq SINE Alu 1 301 -12 2414 74 0 0 chr11 67027008 67027305 -83756248 + AluSg1 SINE Alu 1 297 -12 262 233 70 23 chr11 67027945 67028031 -83755522 + L1MC4a LINE L1 6076 6165 -1643 2145 123 0 19 chr11 67028434 67028752 -83754801 + AluSx SINE Alu 1 312 0 1935 140 0 26 chr11 67029476 67029783 -83753770 + AluJo SINE Alu 1 299 -13 325 280 17 114 chr11 67029827 67029946 -83753607 - L1MC4a LINE L1 -1876 5932 5834 2236 93 14 0 chr11 67029946 67030236 -83753317 - AluSp SINE Alu -19 294 1 325 280 17 114 chr11 67030236 67030291 -83753262 - L1MC4a LINE L1 -1974 5834 5775 1116 140 16 21 chr11 67030292 67030485 -83753068 - AluJb SINE Alu -5 307 116 8650 167 11 9 chr11 67030585 67032854 -83750699 + L1PB1 LINE L1 3514 5794 -357 204 40 0 0 chr11 67032854 67032879 -83750674 + (CA)n Simple_repeat Simple_repeat 1 25 0 8650 167 11 9 chr11 67032879 67033236 -83750317 + L1PB1 LINE L1 5794 6149 -2 549 207 15 7 chr11 67033229 67033364 -83750189 + L1ME1 LINE L1 4978 5113 -1033 * 444 234 69 14 chr11 67033363 67033508 -83750045 - L1ME2 LINE L1 -223 5941 5789 * 1935 195 103 94 chr11 67033517 67033933 -83749620 + L1ME1 LINE L1 5119 5530 -804 271 45 318 0 chr11 67033933 67033977 -83749576 + U7 snRNA snRNA 5 62 -1 1935 195 103 94 chr11 67033977 67034285 -83749268 + L1ME1 LINE L1 5530 5834 -500 2333 83 0 0 chr11 67034285 67034574 -83748979 + AluY SINE Alu 1 289 -22 1935 195 103 94 chr11 67034574 67034938 -83748615 + L1ME1 LINE L1 5834 6334 0 1792 97 13 0 chr11 67034985 67035211 -83748342 - MER30 DNA MER1_type 0 230 2 402 217 137 43 chr11 67035660 67035821 -83747732 - HAL1 LINE L1 0 2507 2332 364 310 98 11 chr11 67035958 67036142 -83747411 + MIR SINE MIR 7 206 -56 183 196 71 18 chr11 67036846 67036902 -83746651 + L2 LINE L2 3213 3271 -1 21 0 0 0 chr11 67037924 67037945 -83745608 + AT_rich Low_complexity Low_complexity 1 21 0 980 171 74 23 chr11 67038004 67038221 -83745332 - MER61E LTR ERV1 0 569 342 268 194 0 104 chr11 67038315 67038382 -83745171 - MER61E LTR ERV1 -411 158 99 * 458 217 43 17 chr11 67038379 67038494 -83745059 - LTR25 LTR ERV1 -441 353 236 1067 259 106 54 chr11 67038809 67038855 -83744698 - L1ME3A LINE L1 -206 5964 5922 1779 142 133 6 chr11 67038855 67039179 -83744374 + MLT1A1 LTR MaLR 1 365 0 1067 259 106 54 chr11 67039179 67039892 -83743661 - L1ME3A LINE L1 -248 5922 5173 5028 155 59 6 chr11 67040039 67041570 -83741983 - L1PBa LINE L1 -3163 3699 2081 3939 25 0 2 chr11 67041570 67042008 -83741545 - L1PA4 LINE L1 0 6155 5719 5028 155 59 6 chr11 67042008 67042034 -83741519 - L1PBa LINE L1 -4781 2081 2058 2071 130 0 0 chr11 67042177 67042483 -83741070 - AluSx SINE Alu 0 306 1 1269 145 88 8 chr11 67042483 67042745 -83740808 + L1PBa LINE L1 1794 2076 -4787 563 185 269 0 chr11 67042933 67043063 -83740490 + MER5B DNA MER1_type 11 175 -3 382 241 0 0 chr11 67044727 67044806 -83738747 + MIR SINE MIR 53 131 -77 532 272 82 71 chr11 67044873 67045031 -83738522 + L1M4b LINE L1 11 175 -6684 2180 69 35 3 chr11 67045031 67045320 -83738233 + AluY SINE Alu 1 298 -13 532 272 82 71 chr11 67045320 67045429 -83738124 + L1M4b LINE L1 175 281 -6578 379 255 49 117 chr11 67045477 67045724 -83737829 + L1M4b LINE L1 755 984 -5871 2272 104 7 3 chr11 67045869 67046178 -83737375 + AluSg SINE Alu 1 310 0 848 150 15 23 chr11 67046179 67046312 -83737241 + FLAM_C SINE Alu 2 133 0 2476 66 0 3 chr11 67046336 67046637 -83736916 + AluY SINE Alu 1 300 -11 694 200 26 0 chr11 67046849 67046964 -83736589 + FLAM_C SINE Alu 1 118 -15 34 34 0 17 chr11 67046964 67046991 -83736562 + AT_rich Low_complexity Low_complexity 1 27 -31 1879 146 10 7 chr11 67046991 67047286 -83736267 + AluSx SINE Alu 1 296 -16 34 34 0 17 chr11 67047286 67047317 -83736236 + AT_rich Low_complexity Low_complexity 27 58 0 2374 93 0 0 chr11 67048568 67048868 -83734685 + AluSq SINE Alu 1 300 -13 2414 74 0 0 chr11 67049112 67049409 -83734144 + AluSg1 SINE Alu 1 297 -12 262 233 70 23 chr11 67050049 67050135 -83733418 + L1MC4a LINE L1 6076 6165 -1643 1998 121 0 21 chr11 67050538 67050828 -83732725 + AluSx SINE Alu 1 284 -28 1094 110 0 37 chr11 67050664 67050828 -83732725 + AluSg/x SINE Alu 127 313 0 189 35 35 0 chr11 67050828 67050857 -83732696 + (CAAAA)n Simple_repeat Simple_repeat 2 85 0 1947 140 0 26 chr11 67051580 67051887 -83731666 + AluJo SINE Alu 1 299 -13 333 280 17 114 chr11 67051931 67052050 -83731503 - L1MC4a LINE L1 -1876 5932 5834 2276 90 14 0 chr11 67052050 67052340 -83731213 - AluSp SINE Alu -19 294 1 333 280 17 114 chr11 67052340 67052395 -83731158 - L1MC4a LINE L1 -1974 5834 5775 1302 142 13 27 chr11 67052396 67052621 -83730932 - AluJo SINE Alu -5 307 86 2480 81 10 3 chr11 67052820 67053130 -83730423 - AluSq SINE Alu -1 312 1 359 274 65 0 chr11 67053131 67053255 -83730298 - L1MC4a LINE L1 -431 5690 5559 264 223 11 21 chr11 67053275 67053369 -83730184 - L1P LINE L1 -726 5425 5333 1134 237 96 16 chr11 67053605 67053989 -83729564 + MLT1C LTR MaLR 53 467 0 269 250 80 62 chr11 67054773 67054885 -83728668 + MIR SINE MIR 23 136 -126 1643 170 10 35 chr11 67056615 67056926 -83726627 - AluJo SINE Alu -9 303 1 1133 99 6 6 chr11 67057170 67057331 -83726222 + AluSg/x SINE Alu 137 297 -15 2087 137 0 7 chr11 67057360 67057666 -83725887 + AluSx SINE Alu 1 304 -8 225 0 0 0 chr11 67057779 67057804 -83725749 + (T)n Simple_repeat Simple_repeat 1 25 0 2187 120 7 10 chr11 67057806 67058114 -83725439 - AluSc SINE Alu -2 307 1 1581 107 22 0 chr11 67058509 67058734 -83724819 - MER30 DNA MER1_type 0 230 1 201 291 50 43 chr11 67059583 67059724 -83723829 + MIR SINE MIR 121 262 0 4328 175 14 10 chr11 67062631 67062926 -83720627 - MER54B LTR ERVL -3 790 498 267 31 0 0 chr11 67062926 67062958 -83720595 + (TTA)n Simple_repeat Simple_repeat 2 33 0 511 67 13 0 chr11 67062958 67063033 -83720520 - L1PB1 LINE L1 -10 6141 6066 4328 175 14 10 chr11 67063033 67063523 -83720030 - MER54B LTR ERVL -294 499 1 383 18 107 0 chr11 67063560 67063616 -83719937 + L1P LINE L1 4212 4273 -1873 2603 162 104 24 chr11 67063616 67064232 -83719321 - L1MB1 LINE L1 -28 6842 6178 180 97 0 0 chr11 67064232 67064263 -83719290 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 748 217 6 0 chr11 67064360 67064521 -83719032 - L1MB1 LINE L1 -1977 4871 4710 729 264 41 39 chr11 67064527 67064890 -83718663 - L1MB1 LINE L1 -4172 2677 2314 264 391 35 0 chr11 67065280 67065367 -83718186 + MIR SINE MIR 3 92 -170 369 127 70 0 chr11 67065402 67065473 -83718080 - L1PA14 LINE L1 0 6161 6086 2760 191 40 9 chr11 67065473 67066104 -83717449 + L1P4 LINE L1 4668 5323 -842 180 0 0 0 chr11 67066104 67066124 -83717429 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2760 191 40 9 chr11 67066124 67066375 -83717178 + L1P4 LINE L1 5323 5565 -600 9023 204 50 14 chr11 67066375 67069080 -83714473 - L1 LINE L1 -1432 6133 3332 231 225 84 0 chr11 67069087 67069158 -83714395 + L1M1 LINE L1 2515 2591 -4974 12799 161 38 4 chr11 67069161 67071400 -83712153 + L1MA9 LINE L1 17 2332 -5233 3074 244 77 5 chr11 67071404 67072323 -83711230 + L1PBa LINE L1 58 1042 -5821 7496 136 67 11 chr11 67072336 67073870 -83709683 + L1PBa LINE L1 1107 2866 -3997 3107 144 9 0 chr11 67073853 67074407 -83709146 + L1MA9 LINE L1 2642 3200 -4365 * 2809 213 86 1 chr11 67074405 67075146 -83708407 + L1MA9 LINE L1 5329 6132 -1433 * 12074 186 18 21 chr11 67075364 67077252 -83706301 + L1M1 LINE L1 2663 4554 -3011 7080 60 9 0 chr11 67077252 67078900 -83704653 + L1PA8 LINE L1 4525 6164 -8 12074 186 18 21 chr11 67078900 67081201 -83702352 + L1M1 LINE L1 4554 6634 -931 1770 156 24 29 chr11 67081193 67081609 -83701944 + L1PB3 LINE L1 4523 4936 -2629 * 243 0 0 0 chr11 67081609 67081636 -83701917 + (A)n Simple_repeat Simple_repeat 1 27 0 306 164 0 0 chr11 67081763 67081818 -83701735 + A-rich Low_complexity Low_complexity 1 55 0 2083 157 39 34 chr11 67082412 67082960 -83700593 - MLT2A2 LTR ERVL 0 554 1 489 198 35 0 chr11 67082982 67083098 -83700455 + L1MA9 LINE L1 6191 6310 -2 24 0 0 0 chr11 67083385 67083409 -83700144 + AT_rich Low_complexity Low_complexity 1 24 0 3144 195 29 9 chr11 67083409 67084178 -83699375 + L1PB3 LINE L1 6034 6817 -748 3744 107 71 40 chr11 67084180 67084365 -83699188 + L1PB3 LINE L1 6877 7055 -518 2617 86 11 29 chr11 67084365 67084747 -83698806 - THE1C LTR MaLR 0 375 1 3744 107 71 40 chr11 67084747 67085236 -83698317 + L1PB3 LINE L1 7055 7572 -1 28 29 0 0 chr11 67085273 67085308 -83698245 + AT_rich Low_complexity Low_complexity 1 35 0 2241 207 36 26 chr11 67085476 67086258 -83697295 + L1MA9 LINE L1 6221 7009 -722 268 155 0 0 chr11 67086256 67086314 -83697239 + L1PA16 LINE L1 6106 6163 -3 * 2478 206 29 42 chr11 67086325 67086570 -83696983 + L1MA9 LINE L1 7014 7261 -470 455 150 10 30 chr11 67086570 67086670 -83696883 + L1PA16 LINE L1 6069 6166 0 2478 206 29 42 chr11 67086670 67087066 -83696487 + L1MA9 LINE L1 7261 7648 -83 297 0 0 0 chr11 67087066 67087099 -83696454 + (CA)n Simple_repeat Simple_repeat 2 34 0 2478 206 29 42 chr11 67087099 67087146 -83696407 + L1MA9 LINE L1 7648 7694 -37 302 175 25 12 chr11 67088644 67088724 -83694829 + L1MA7 LINE L1 5877 5957 -334 805 356 16 25 chr11 67088732 67089178 -83694375 + L1M3a LINE L1 1083 1524 -5503 409 281 16 66 chr11 67089998 67090254 -83693299 + L1M3a LINE L1 1728 1970 -5060 41198 41 4 12 chr11 67090255 67096013 -83687540 + L1P2 LINE L1 13 5723 -432 8018 93 12 27 chr11 67096130 67097414 -83686139 - HERVH LTR ERV1 -5536 2177 913 2385 96 96 12 chr11 67097423 67097831 -83685722 - LTR7 LTR ERV1 -8 442 1 2805 146 45 19 chr11 67097831 67098526 -83685027 - HERVH LTR ERV1 -6796 917 1 3044 93 13 20 chr11 67098529 67098980 -83684573 - LTR7 LTR ERV1 -2 448 1 14679 93 6 0 chr11 67098984 67101836 -83681717 + L1PA8 LINE L1 3303 6158 -14 349 242 74 11 chr11 67103722 67103817 -83679736 - MLT1K LTR MaLR -7 581 481 450 210 106 8 chr11 67104199 67104368 -83679185 - LTR16A LTR ERVL -12 438 222 * 1336 196 4 0 chr11 67104348 67104577 -83678976 + MSTB2 LTR MaLR 228 457 0 1035 301 79 20 chr11 67104634 67105355 -83678198 - HERV16 LTR ERVL -2628 2368 1608 383 279 43 14 chr11 67105360 67105500 -83678053 - LTR16A LTR ERVL -7 443 300 1988 238 103 12 chr11 67105502 67106018 -83677535 + MLT1F1 LTR MaLR 5 567 0 266 367 20 0 chr11 67106020 67106170 -83677383 + MLT1F1-int LTR MaLR 3 155 -1216 575 260 98 7 chr11 67106178 67106424 -83677129 + MLT1F1-int LTR MaLR 260 546 -825 1694 109 36 25 chr11 67106465 67106740 -83676813 + L1MA2 LINE L1 5848 6125 -179 2597 14 0 3 chr11 67106740 67107027 -83676526 + AluYa5 SINE Alu 21 306 -5 28 29 0 0 chr11 67107027 67107062 -83676491 + AT_rich Low_complexity Low_complexity 1 35 0 7227 75 3 0 chr11 67107162 67108334 -83675219 + L1PA7 LINE L1 5008 6181 0 27 29 0 0 chr11 67108530 67108564 -83674989 + AT_rich Low_complexity Low_complexity 1 34 0 413 264 33 99 chr11 67109506 67109718 -83673835 - MLT1-int LTR MaLR -182 1189 992 405 281 49 37 chr11 67109900 67110064 -83673489 - MLT1-int LTR MaLR -507 864 699 1289 125 0 0 chr11 67110210 67110402 -83673151 - L1MA2 LINE L1 0 6304 6113 231 33 0 0 chr11 67110402 67110426 -83673127 + (T)n Simple_repeat Simple_repeat 1 24 0 7635 133 3 8 chr11 67110526 67111694 -83671859 - L1P LINE L1 -1474 4672 3511 207 0 0 0 chr11 67111694 67111717 -83671836 + (T)n Simple_repeat Simple_repeat 1 23 0 260 176 132 0 chr11 67111817 67111885 -83671668 + MER34 LTR ERV1 188 264 -278 1741 138 47 44 chr11 67112458 67112819 -83670734 - L1MA8 LINE L1 -74 6217 5856 27 0 0 0 chr11 67112866 67112893 -83670660 + AT_rich Low_complexity Low_complexity 1 27 0 666 93 0 0 chr11 67112900 67112986 -83670567 - AluJ/FLAM SINE Alu -226 86 1 591 163 0 0 chr11 67112999 67113091 -83670462 + MER34 LTR ERV1 324 415 -127 2354 46 7 3 chr11 67113125 67113410 -83670143 + AluY SINE Alu 1 286 -25 405 252 56 0 chr11 67113510 67113617 -83669936 + L2 LINE L2 3201 3313 0 447 222 130 0 chr11 67114140 67114248 -83669305 + MIR SINE MIR 21 142 -120 333 237 151 11 chr11 67114477 67114570 -83668983 - L2 LINE L2 -29 3243 3138 187 262 66 0 chr11 67114682 67114743 -83668810 + MIR SINE MIR 89 153 -109 1227 149 12 66 chr11 67114901 67114942 -83668611 + AluJo SINE Alu 54 96 -216 2059 107 4 4 chr11 67114942 67115223 -83668330 + AluSq SINE Alu 1 281 -32 189 0 0 0 chr11 67115223 67115244 -83668309 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1227 149 12 66 chr11 67115244 67115443 -83668110 + AluJo SINE Alu 94 282 -30 192 40 0 0 chr11 67115447 67115472 -83668081 + (GAAA)n Simple_repeat Simple_repeat 1 25 0 1930 140 10 10 chr11 67115490 67115783 -83667770 + AluSx SINE Alu 7 299 -13 2475 79 0 0 chr11 67115856 67116159 -83667394 + AluY SINE Alu 1 303 -8 2057 130 0 7 chr11 67116283 67116576 -83666977 - AluSx SINE Alu -21 291 1 59 0 0 0 chr11 67116586 67116645 -83666908 + AT_rich Low_complexity Low_complexity 1 59 0 2050 135 0 0 chr11 67116711 67117007 -83666546 + AluSq SINE Alu 1 296 -17 2451 71 3 0 chr11 67117031 67117325 -83666228 + AluSp SINE Alu 1 295 -18 2440 74 3 7 chr11 67117464 67117773 -83665780 - AluY SINE Alu -3 308 1 434 197 26 0 chr11 67117792 67117868 -83665685 + MER2 DNA MER2_type 268 345 0 1057 211 147 34 chr11 67117874 67118201 -83665352 + MLT1E LTR MaLR 207 570 -23 288 210 168 25 chr11 67118201 67118320 -83665233 - L1MEc LINE L1 -1318 4897 4762 1156 214 0 0 chr11 67118352 67118558 -83664995 + AluJo SINE Alu 6 211 -101 552 30 0 0 chr11 67118568 67118634 -83664919 + (GA)n Simple_repeat Simple_repeat 1 66 0 2400 219 34 61 chr11 67118646 67118894 -83664659 - L1MEc LINE L1 -1538 4677 4424 1485 139 155 4 chr11 67118894 67119145 -83664408 + AluSx SINE Alu 1 289 -23 2400 219 34 61 chr11 67119145 67119402 -83664151 - L1MEc LINE L1 -1791 4424 4162 324 0 0 0 chr11 67119402 67119438 -83664115 + (TG)n Simple_repeat Simple_repeat 2 37 0 2163 107 18 0 chr11 67119438 67119718 -83663835 - AluSx SINE Alu -27 285 1 1690 134 16 4 chr11 67119719 67119973 -83663580 - AluSx SINE Alu -21 291 35 2400 219 34 61 chr11 67119973 67120163 -83663390 - L1MEc LINE L1 -2051 4164 3997 270 219 0 0 chr11 67120199 67120263 -83663290 + (TATG)n Simple_repeat Simple_repeat 4 67 0 1874 132 0 66 chr11 67120267 67120585 -83662968 - AluJo SINE Alu -15 297 1 1840 87 24 4 chr11 67120673 67120926 -83662627 - AluY SINE Alu -13 298 41 1269 133 0 25 chr11 67120944 67121140 -83662413 - AluSx SINE Alu -121 191 1 3043 226 115 64 chr11 67121141 67121710 -83661843 - L1MEc LINE L1 -2300 3915 3376 1585 156 23 76 chr11 67121710 67122012 -83661541 + AluJo SINE Alu 12 297 -15 3043 226 115 64 chr11 67122012 67122223 -83661330 - L1MEc LINE L1 -2839 3376 3177 2394 101 0 0 chr11 67122223 67122531 -83661022 + AluSc SINE Alu 1 308 -1 3043 226 115 64 chr11 67122531 67122794 -83660759 - L1MEc LINE L1 -3038 3177 2929 2170 131 3 0 chr11 67122794 67123099 -83660454 + AluSx SINE Alu 1 306 -6 3043 226 115 64 chr11 67123099 67123350 -83660203 - L1MEc LINE L1 -3286 2929 2692 1489 122 28 125 chr11 67123350 67123670 -83659883 - AluJo SINE Alu -23 289 1 3043 226 115 64 chr11 67123670 67123896 -83659657 - L1MEc LINE L1 -3523 2692 2315 2252 103 7 0 chr11 67123908 67124209 -83659344 + AluSx SINE Alu 1 303 -9 846 190 57 25 chr11 67124211 67124369 -83659184 + AluJb SINE Alu 124 286 -26 1334 168 0 9 chr11 67124413 67124627 -83658926 + AluJo SINE Alu 1 212 -100 324 120 0 0 chr11 67126866 67126916 -83656637 + (T)n Simple_repeat Simple_repeat 1 50 0 1136 276 47 44 chr11 67127181 67127631 -83655922 - L1MEc LINE L1 -4490 1906 1456 2460 84 3 0 chr11 67127632 67127940 -83655613 - AluY SINE Alu -2 309 1 1011 144 0 0 chr11 67127940 67128086 -83655467 - AluSq/x SINE Alu -167 146 1 201 250 88 44 chr11 67128148 67128216 -83655337 + L2 LINE L2 3198 3268 -4 2010 130 0 0 chr11 67128276 67128553 -83655000 - AluSx SINE Alu -35 277 1 2093 128 0 3 chr11 67128706 67129002 -83654551 + AluSx SINE Alu 1 295 -17 2587 43 0 3 chr11 67129681 67129981 -83653572 + AluY SINE Alu 1 299 -12 695 157 0 0 chr11 67130123 67130244 -83653309 - L1MC2 LINE L1 -403 5941 5821 312 264 69 0 chr11 67130290 67130377 -83653176 - MLT1-int LTR MaLR -107 1264 1172 742 201 24 11 chr11 67130378 67130534 -83653019 - MSTB LTR MaLR -80 346 159 1641 168 34 3 chr11 67130541 67130833 -83652720 + AluJo SINE Alu 3 303 -9 2415 93 0 3 chr11 67131177 67131488 -83652065 - AluSg SINE Alu 0 310 1 2429 77 0 13 chr11 67131551 67131863 -83651690 - AluY SINE Alu -3 308 1 734 209 8 0 chr11 67131865 67131994 -83651559 - AluJo SINE Alu -178 134 5 25 65 0 0 chr11 67132264 67132310 -83651243 + AT_rich Low_complexity Low_complexity 1 46 0 2037 147 0 3 chr11 67132859 67133172 -83650381 - AluSx SINE Alu 0 312 1 647 195 24 73 chr11 67133259 67133464 -83650089 - L2 LINE L2 -8 3305 3111 1689 176 4 0 chr11 67133735 67134007 -83649546 + AluJb SINE Alu 1 273 -39 239 215 15 0 chr11 67134007 67134072 -83649481 + A-rich Low_complexity Low_complexity 2 67 0 1691 166 43 4 chr11 67134936 67135213 -83648340 + AluJo SINE Alu 1 288 -24 2192 114 3 0 chr11 67135434 67135733 -83647820 - AluSp SINE Alu -13 300 1 2072 117 7 10 chr11 67135762 67136062 -83647491 + AluSg SINE Alu 1 299 -11 377 237 105 0 chr11 67136121 67136235 -83647318 + MIR SINE MIR 126 251 -11 1769 156 6 52 chr11 67136551 67136684 -83646869 + AluJb SINE Alu 1 139 -173 2277 92 3 3 chr11 67136684 67136977 -83646576 + AluSp SINE Alu 1 293 -20 1769 156 6 52 chr11 67136977 67137170 -83646383 + AluJb SINE Alu 139 312 0 2012 136 0 17 chr11 67137249 67137551 -83646002 - AluSx SINE Alu -15 297 1 259 321 36 48 chr11 67137722 67137806 -83645747 + MER5A DNA MER1_type 72 154 -35 203 314 105 57 chr11 67137726 67137831 -83645722 - MER5A DNA MER1_type -64 125 16 * 905 154 0 0 chr11 67138219 67138349 -83645204 + FLAM_A SINE Alu 2 131 -2 466 239 131 23 chr11 67139435 67139626 -83643927 + MIR SINE MIR 46 254 -8 763 152 54 0 chr11 67140083 67140195 -83643358 + FLAM_C SINE Alu 1 118 -15 2279 95 3 13 chr11 67140691 67140995 -83642558 - AluSq SINE Alu -12 301 1 2089 131 13 19 chr11 67141348 67141662 -83641891 + AluSx SINE Alu 1 312 0 1572 155 9 78 chr11 67142043 67142378 -83641175 + AluJo SINE Alu 1 312 0 207 0 0 0 chr11 67142741 67142764 -83640789 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1698 153 33 4 chr11 67143065 67143340 -83640213 - AluJb SINE Alu -29 283 1 2364 101 0 0 chr11 67144243 67144539 -83639014 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr11 67144539 67144562 -83638991 + AT_rich Low_complexity Low_complexity 1 23 0 264 209 15 179 chr11 67144569 67144703 -83638850 + L1MC2 LINE L1 5574 5685 -2123 2537 50 10 0 chr11 67144705 67145004 -83638549 + AluY SINE Alu 2 303 -8 406 148 0 0 chr11 67145074 67145135 -83638418 + U6 snRNA snRNA 4 64 -43 1204 189 156 36 chr11 67145203 67145510 -83638043 + MER2 DNA MER2_type 1 344 0 2628 58 0 0 chr11 67145560 67145868 -83637685 + AluY SINE Alu 1 308 -3 2402 97 0 3 chr11 67145931 67146242 -83637311 + AluSg SINE Alu 1 310 0 1641 168 34 3 chr11 67146586 67146878 -83636675 - AluJo SINE Alu -9 303 3 742 201 24 11 chr11 67146885 67147041 -83636512 + MSTB LTR MaLR 159 346 -80 312 264 69 0 chr11 67147042 67147129 -83636424 + MLT1-int LTR MaLR 1172 1264 -107 695 157 0 0 chr11 67147175 67147296 -83636257 + L1MC2 LINE L1 5821 5941 -403 2054 114 3 7 chr11 67147438 67147735 -83635818 - AluSc SINE Alu -13 296 1 805 178 0 0 chr11 67147813 67147942 -83635611 + AluSg/x SINE Alu 173 301 -11 1968 153 0 28 chr11 67147961 67148281 -83635272 + AluJb SINE Alu 1 311 -1 304 324 242 19 chr11 67148850 67149232 -83634321 - L2 LINE L2 -443 2871 2575 2012 107 3 60 chr11 67149232 67149549 -83634004 - AluSx SINE Alu -13 299 1 304 324 242 19 chr11 67149549 67149790 -83633763 - L2 LINE L2 -739 2575 2109 1623 172 28 7 chr11 67150132 67150422 -83633131 + AluJb SINE Alu 4 299 -13 2162 125 0 0 chr11 67150779 67151084 -83632469 + AluSq SINE Alu 1 305 -8 1006 135 41 29 chr11 67151086 67151256 -83632297 + AluSg/x SINE Alu 134 305 -5 2585 71 0 0 chr11 67151371 67151681 -83631872 + AluY SINE Alu 1 310 -1 2315 100 0 7 chr11 67151708 67152009 -83631544 + AluSx SINE Alu 1 299 -13 273 246 14 14 chr11 67152209 67152278 -83631275 - L2 LINE L2 -1064 2250 2182 23 78 0 0 chr11 67153233 67153284 -83630269 + AT_rich Low_complexity Low_complexity 1 51 0 1807 163 34 3 chr11 67153640 67153934 -83629619 - AluJb SINE Alu -9 303 1 2069 147 0 10 chr11 67154660 67154967 -83628586 - AluSx SINE Alu -8 304 1 523 231 81 0 chr11 67154967 67155127 -83628426 - L1M4 LINE L1 -1010 5136 4964 853 182 44 0 chr11 67155158 67155317 -83628236 + FRAM SINE Alu 1 165 -11 533 212 0 53 chr11 67155317 67155430 -83628123 + MLT1E LTR MaLR 12 118 -536 697 226 8 0 chr11 67155456 67155589 -83627964 + MER2 DNA MER2_type 1 134 -211 2286 78 17 17 chr11 67155590 67155885 -83627668 - AluSx SINE Alu -17 295 1 436 197 26 0 chr11 67155904 67155980 -83627573 + MER2 DNA MER2_type 268 345 0 1069 214 145 33 chr11 67155984 67156315 -83627238 + MLT1E LTR MaLR 203 570 -23 280 210 168 25 chr11 67156315 67156434 -83627119 - L1M4 LINE L1 -1318 4828 4693 1166 214 0 0 chr11 67156466 67156672 -83626881 + AluJo SINE Alu 6 211 -101 480 35 0 0 chr11 67156682 67156740 -83626813 + (GA)n Simple_repeat Simple_repeat 1 58 0 2270 216 37 63 chr11 67156752 67157001 -83626552 - L1M4 LINE L1 -1538 4608 4354 1400 148 160 4 chr11 67157001 67157251 -83626302 + AluSx SINE Alu 1 289 -23 2270 216 37 63 chr11 67157251 67157506 -83626047 - L1M4 LINE L1 -1792 4354 4094 432 0 0 0 chr11 67157506 67157554 -83625999 + (TG)n Simple_repeat Simple_repeat 2 49 0 2216 96 18 0 chr11 67157554 67157834 -83625719 - AluSx SINE Alu -27 285 1 1697 134 16 4 chr11 67157835 67158089 -83625464 - AluSx SINE Alu -21 291 35 2270 216 37 63 chr11 67158089 67158279 -83625274 - L1M4 LINE L1 -2050 4096 3928 270 219 0 0 chr11 67158314 67158378 -83625175 + (TATG)n Simple_repeat Simple_repeat 4 67 0 1895 132 0 66 chr11 67158382 67158700 -83624853 - AluJo SINE Alu -15 297 1 1855 87 24 4 chr11 67158788 67159041 -83624512 - AluY SINE Alu -13 298 41 1286 133 0 25 chr11 67159059 67159255 -83624298 - AluSx SINE Alu -121 191 1 2908 226 116 64 chr11 67159256 67159824 -83623729 - L1M4 LINE L1 -2300 3846 3309 1594 156 23 76 chr11 67159824 67160126 -83623427 + AluJo SINE Alu 12 297 -15 2908 226 116 64 chr11 67160126 67160337 -83623216 - L1M4 LINE L1 -2837 3309 3110 2408 101 0 0 chr11 67160337 67160645 -83622908 + AluSc SINE Alu 1 308 -1 2908 226 116 64 chr11 67160645 67160908 -83622645 - L1M4 LINE L1 -3036 3110 2862 2120 138 3 0 chr11 67160908 67161212 -83622341 + AluSx SINE Alu 1 305 -7 2908 226 116 64 chr11 67161212 67161463 -83622090 - L1M4 LINE L1 -3284 2862 2625 1510 122 28 125 chr11 67161463 67161783 -83621770 - AluJo SINE Alu -23 289 1 2908 226 116 64 chr11 67161783 67162009 -83621544 - L1M4 LINE L1 -3521 2625 2246 2315 106 0 0 chr11 67162021 67162324 -83621229 + AluSx SINE Alu 1 303 -9 754 189 57 31 chr11 67162326 67162485 -83621068 + AluJb SINE Alu 124 286 -26 1964 149 0 31 chr11 67162529 67162850 -83620703 + AluJb SINE Alu 1 311 -1 180 234 0 0 chr11 67163504 67163551 -83620002 + A-rich Low_complexity Low_complexity 2 48 0 233 307 126 0 chr11 67163839 67163966 -83619587 - MIR SINE MIR -42 220 78 570 214 77 48 chr11 67164109 67164357 -83619196 + ORSL DNA AcHobo 1 255 -20 591 98 0 33 chr11 67164872 67164994 -83618559 + (GGA)n Simple_repeat Simple_repeat 2 119 0 256 239 0 14 chr11 67165021 67165092 -83618461 + GA-rich Low_complexity Low_complexity 2 71 0 393 164 0 0 chr11 67165119 67165192 -83618361 + GA-rich Low_complexity Low_complexity 2 74 0 2243 92 34 0 chr11 67165487 67165779 -83617774 + AluSp SINE Alu 1 302 -11 21 0 0 0 chr11 67166390 67166411 -83617142 + AT_rich Low_complexity Low_complexity 1 21 0 2287 73 38 0 chr11 67166411 67166698 -83616855 - AluSq SINE Alu -15 298 1 454 38 0 0 chr11 67166698 67166751 -83616802 - AluSg/x SINE Alu -175 134 82 1161 191 14 5 chr11 67166752 67166967 -83616586 - AluJo SINE Alu -95 217 1 2822 158 115 64 chr11 67166973 67167123 -83616430 - L1MB1 LINE L1 0 6168 6027 2176 124 0 3 chr11 67167123 67167421 -83616132 + AluSx SINE Alu 1 297 -15 2614 48 0 0 chr11 67167424 67167719 -83615834 + AluY SINE Alu 1 295 -16 2822 158 115 64 chr11 67167719 67167820 -83615733 - L1MB1 LINE L1 -142 6026 5932 1618 169 7 27 chr11 67167820 67168116 -83615437 - AluJo SINE Alu -22 290 1 2822 158 115 64 chr11 67168116 67168504 -83615049 - L1MB1 LINE L1 -236 5932 5491 2079 109 29 0 chr11 67168591 67168889 -83614664 + AluSx SINE Alu 1 306 0 747 130 0 49 chr11 67169238 67169314 -83614239 - FLAM_C SINE Alu -194 118 49 2479 107 28 6 chr11 67169314 67169670 -83613883 + THE1B LTR MaLR 1 364 0 747 130 0 49 chr11 67169670 67169716 -83613837 - FLAM_C SINE Alu -263 49 2 1689 126 17 33 chr11 67169836 67170138 -83613415 - AluSx SINE Alu -15 297 1 1354 225 56 72 chr11 67170143 67170641 -83612912 - LTR33A LTR ERVL -30 493 4 2394 67 10 7 chr11 67170762 67171059 -83612494 + AluSc SINE Alu 1 298 -11 22 0 0 0 chr11 67171668 67171690 -83611863 + AT_rich Low_complexity Low_complexity 1 22 0 1109 189 57 5 chr11 67171699 67171911 -83611642 + L1MB7 LINE L1 5923 6145 -39 532 246 106 15 chr11 67171911 67172110 -83611443 - L2 LINE L2 -1235 2079 1863 235 176 29 59 chr11 67172242 67172310 -83611243 + MIR SINE MIR 104 169 -93 2191 104 0 38 chr11 67172745 67173063 -83610490 + AluSx SINE Alu 1 306 -6 356 164 0 0 chr11 67173583 67173638 -83609915 + U6 snRNA snRNA 1 55 -52 2471 76 3 0 chr11 67174283 67174585 -83608968 + AluY SINE Alu 1 303 -8 1851 111 65 11 chr11 67175179 67175458 -83608095 - AluSg SINE Alu -16 294 1 1891 138 85 11 chr11 67175702 67176065 -83607488 - L1MC3 LINE L1 -179 7606 7217 264 261 22 33 chr11 67176099 67176191 -83607362 - MLT1F1 LTR MaLR -442 125 35 1562 166 55 0 chr11 67176835 67177106 -83606447 + AluJb SINE Alu 1 286 -26 2429 81 3 0 chr11 67177117 67177413 -83606140 + AluSp SINE Alu 1 297 -16 1732 151 31 24 chr11 67177462 67177753 -83605800 - AluJb SINE Alu -19 293 1 2414 75 3 3 chr11 67178097 67178391 -83605162 - AluSp SINE Alu -19 294 1 251 258 0 15 chr11 67178436 67178502 -83605051 - L2 LINE L2 0 3313 3249 664 182 0 33 chr11 67178518 67178639 -83604914 + AluJb SINE Alu 1 117 -195 2414 71 0 17 chr11 67178819 67179116 -83604437 - AluSc SINE Alu -17 292 1 1768 249 89 19 chr11 67179189 67179272 -83604281 - L2 LINE L2 -337 2977 2901 1935 143 0 0 chr11 67179272 67179544 -83604009 + AluSx SINE Alu 3 274 -38 1768 249 89 19 chr11 67179544 67180034 -83603519 - L2 LINE L2 -413 2901 2364 892 138 0 0 chr11 67180036 67180166 -83603387 + FLAM_C SINE Alu 1 130 -3 2391 107 0 0 chr11 67180172 67180480 -83603073 + AluSx SINE Alu 1 308 -4 530 185 11 0 chr11 67180713 67180805 -83602748 - Tigger7 DNA MER2_type -1 2486 2394 * 930 163 58 17 chr11 67180804 67180976 -83602577 - Tigger7 DNA MER2_type -472 261 83 463 152 0 0 chr11 67181249 67181315 -83602238 + AluS SINE Alu 3 68 -245 414 100 0 0 chr11 67181328 67181388 -83602165 - Alu SINE Alu -256 62 3 286 253 179 0 chr11 67181399 67181494 -83602059 - MIR SINE MIR -63 145 34 1586 88 18 18 chr11 67181618 67181844 -83601709 + AluSq SINE Alu 1 226 -87 275 153 0 146 chr11 67181858 67182002 -83601551 + FRAM SINE Alu 40 162 -4 1641 152 83 7 chr11 67182105 67182381 -83601172 - AluSx SINE Alu -15 297 1 2208 116 3 3 chr11 67182618 67182921 -83600632 - AluSg SINE Alu -7 303 1 2203 97 0 3 chr11 67182951 67183239 -83600314 - AluSx SINE Alu -14 298 12 918 192 133 107 chr11 67183258 67183680 -83599873 + L1M4 LINE L1 3726 4158 -1988 2038 124 7 0 chr11 67183682 67183812 -83599741 + AluSq SINE Alu 1 129 -182 207 0 0 0 chr11 67183812 67183835 -83599718 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2038 124 7 0 chr11 67183835 67184013 -83599540 + AluSq SINE Alu 129 311 0 1342 205 49 65 chr11 67184028 67184221 -83599332 + L1M4 LINE L1 4412 4607 -1539 2149 101 10 3 chr11 67184221 67184518 -83599035 - AluSq SINE Alu -14 299 1 1342 205 49 65 chr11 67184518 67184604 -83598949 + L1M4 LINE L1 4607 4693 -1453 2574 61 0 0 chr11 67184604 67184899 -83598654 + AluY SINE Alu 1 295 -16 1342 205 49 65 chr11 67184899 67185047 -83598506 + L1M4 LINE L1 4693 4833 -1313 2084 141 0 3 chr11 67185082 67185381 -83598172 + AluSx SINE Alu 1 298 -14 2065 120 3 0 chr11 67185382 67185706 -83597847 + AluSq SINE Alu 2 326 0 785 241 68 5 chr11 67185813 67186033 -83597520 + MIR SINE MIR 29 262 0 1081 184 19 10 chr11 67186161 67186367 -83597186 + AluJo SINE Alu 11 218 -94 408 207 7 117 chr11 67186367 67186512 -83597041 + AluSq SINE Alu 84 212 -91 2636 181 122 29 chr11 67186910 67187500 -83596053 - HERVL68 LTR ERVL -1658 1379 735 2023 146 113 125 chr11 67187506 67188171 -83595382 - MER4A LTR ERV1 -4 660 4 1062 203 137 43 chr11 67188398 67188787 -83594766 + MER66A LTR ERV1 97 425 -53 8364 55 1 0 chr11 67188797 67189762 -83593791 + LTR5 LTR ERVK 1 966 -3 470 275 131 0 chr11 67189817 67189977 -83593576 + MER58A DNA MER1_type 25 205 -19 598 172 53 156 chr11 67189985 67190287 -83593266 - L1M4 LINE L1 -2904 3242 2972 3667 49 0 4 chr11 67190310 67190760 -83592793 + LTR7 LTR ERV1 1 448 -2 2309 190 43 47 chr11 67190764 67191140 -83592413 - MER21B LTR ERV1 -11 852 477 8688 41 1 0 chr11 67191140 67192108 -83591445 + LTR5 LTR ERVK 1 969 0 2309 190 43 47 chr11 67192108 67192221 -83591332 - MER21B LTR ERV1 -386 477 365 255 118 0 0 chr11 67192259 67192293 -83591260 - Alu SINE Alu -269 34 1 1276 150 0 14 chr11 67192359 67192572 -83590981 - MER4C LTR ERV1 0 465 256 1001 120 82 0 chr11 67192577 67192735 -83590818 - AluSg/x SINE Alu -13 297 127 15756 27 2 0 chr11 67192746 67195361 -83588192 - L1PA4 LINE L1 -3 6152 3557 1138 135 16 11 chr11 67195641 67195826 -83587727 + MER61E LTR ERV1 341 526 -43 758 211 9 83 chr11 67195866 67195946 -83587607 + HAL1 LINE L1 765 849 -1658 2228 127 0 0 chr11 67195946 67196254 -83587299 + AluSx SINE Alu 1 308 -4 758 211 9 83 chr11 67196254 67196401 -83587152 + HAL1 LINE L1 849 975 -1532 1931 178 68 23 chr11 67196463 67196857 -83586696 - LTR3 LTR ERVK -16 416 5 280 169 39 26 chr11 67196858 67196935 -83586618 + HAL1 LINE L1 967 1044 -1463 1989 139 7 3 chr11 67196936 67197224 -83586329 + AluSx SINE Alu 1 289 -23 183 42 0 0 chr11 67197230 67197254 -83586299 + (TTAAA)n Simple_repeat Simple_repeat 2 25 0 681 228 97 18 chr11 67197292 67197520 -83586033 + L1MC5 LINE L1 7292 7537 -424 593 250 98 127 chr11 67197588 67198168 -83585385 + L1M4 LINE L1 3692 4246 -1900 2014 144 0 3 chr11 67198168 67198467 -83585086 - AluSx SINE Alu -12 300 3 593 250 98 127 chr11 67198467 67198651 -83584902 + L1M4 LINE L1 4246 4434 -1712 906 107 41 137 chr11 67198977 67199174 -83584379 - THE1B LTR MaLR 0 364 178 1229 94 88 0 chr11 67199659 67199829 -83583724 - THE1B LTR MaLR -179 185 1 2768 110 32 38 chr11 67200321 67200793 -83582760 - L1PA16 LINE L1 -9 6157 5689 1943 150 0 0 chr11 67200795 67201089 -83582464 + AluSc SINE Alu 1 294 -15 2212 104 0 26 chr11 67201433 67201741 -83581812 - AluSx SINE Alu -12 300 1 288 278 38 15 chr11 67201755 67201888 -83581665 + LTR37B LTR ERV1 298 433 -35 2365 97 3 0 chr11 67202306 67202605 -83580948 - AluSp SINE Alu -13 300 1 320 296 43 0 chr11 67203434 67203549 -83580004 - MIR SINE MIR -82 180 61 2137 120 7 7 chr11 67205703 67206039 -83577514 - AluSq SINE Alu 0 313 1 246 310 94 23 chr11 67206485 67206656 -83576897 - MLT1L LTR MaLR -239 376 194 1517 158 8 26 chr11 67206659 67206925 -83576628 + AluJo SINE Alu 43 303 -9 33 0 0 0 chr11 67207390 67207423 -83576130 + AT_rich Low_complexity Low_complexity 1 33 0 496 200 30 128 chr11 67207473 67207788 -83575765 + MER21B LTR ERV1 13 391 -472 2154 147 55 3 chr11 67207788 67208169 -83575384 + MER31A LTR ERV1 1 401 -84 455 336 120 12 chr11 67208283 67208542 -83575011 + MER21B LTR ERV1 466 752 -111 2472 191 123 44 chr11 67209117 67209715 -83573838 - HERVL68 LTR ERVL -1658 1379 719 1958 142 114 125 chr11 67209715 67210379 -83573174 - MER4A LTR ERV1 -4 660 4 2472 191 123 44 chr11 67210379 67210460 -83573093 - HERVL68 LTR ERVL -2318 719 646 985 210 135 41 chr11 67210606 67210995 -83572558 + MER66A LTR ERV1 97 425 -53 8484 56 1 0 chr11 67211005 67211973 -83571580 + LTR5 LTR ERVK 1 969 0 438 269 135 0 chr11 67212029 67212185 -83571368 + MER58A DNA MER1_type 29 205 -19 356 180 77 104 chr11 67212193 67212495 -83571058 - L1 LINE L1 -2904 3242 2972 3689 51 0 4 chr11 67212518 67212968 -83570585 + LTR7 LTR ERV1 1 448 -2 2157 190 43 47 chr11 67212972 67213348 -83570205 - MER21B LTR ERV1 -11 852 477 8690 47 1 0 chr11 67213348 67214316 -83569237 + LTR5 LTR ERVK 1 969 0 2157 190 43 47 chr11 67214316 67214429 -83569124 - MER21B LTR ERV1 -386 477 365 242 118 0 0 chr11 67214467 67214501 -83569052 - Alu SINE Alu -269 34 1 1230 151 0 14 chr11 67214567 67214785 -83568768 - MER4C LTR ERV1 0 465 251 997 133 78 0 chr11 67214785 67214951 -83568602 - AluSg/x SINE Alu -13 297 119 15547 27 3 0 chr11 67214951 67217567 -83565986 - L1PA4 LINE L1 0 6155 3557 1066 135 16 11 chr11 67217847 67218032 -83565521 + MER61E LTR ERV1 341 526 -43 691 211 9 83 chr11 67218072 67218152 -83565401 + HAL1 LINE L1 765 849 -1658 2257 127 0 0 chr11 67218152 67218460 -83565093 + AluSx SINE Alu 1 308 -4 691 211 9 83 chr11 67218460 67218607 -83564946 + HAL1 LINE L1 849 975 -1532 1818 178 68 23 chr11 67218669 67219063 -83564490 - LTR3 LTR ERVK -16 416 5 257 169 39 26 chr11 67219064 67219141 -83564412 + HAL1 LINE L1 967 1044 -1463 2009 139 7 3 chr11 67219142 67219430 -83564123 + AluSx SINE Alu 1 289 -23 630 228 97 18 chr11 67219497 67219725 -83563828 + L1MC5 LINE L1 7292 7537 -424 477 265 89 118 chr11 67219793 67220373 -83563180 + L1M4 LINE L1 3692 4246 -1900 2046 144 0 3 chr11 67220373 67220672 -83562881 - AluSx SINE Alu -12 300 3 477 265 89 118 chr11 67220672 67220856 -83562697 + L1M4 LINE L1 4246 4434 -1712 880 115 52 43 chr11 67221182 67221380 -83562173 - THE1B LTR MaLR 0 364 178 1164 94 88 0 chr11 67221866 67222036 -83561517 - THE1B LTR MaLR -179 185 1 376 255 51 57 chr11 67222344 67222501 -83561052 + L1M4 LINE L1 4476 4631 -1515 5340 129 47 20 chr11 67222525 67222990 -83560563 - L1PA16 LINE L1 -9 6157 5706 2468 59 3 26 chr11 67222990 67223293 -83560260 + AluY SINE Alu 1 296 -15 5340 129 47 20 chr11 67223293 67224015 -83559538 - L1PA16 LINE L1 -460 5706 4951 1000 205 10 5 chr11 67224016 67224211 -83559342 - MLT1A1 LTR MaLR -28 337 142 2214 102 0 0 chr11 67224237 67224521 -83559032 - AluSx SINE Alu -28 284 1 988 118 0 31 chr11 67224521 67224682 -83558871 - MLT1A1 LTR MaLR -209 156 1 225 153 28 42 chr11 67224683 67224755 -83558798 + (TA)n Simple_repeat Simple_repeat 1 71 0 623 179 86 14 chr11 67224928 67225068 -83558485 + MIR SINE MIR 15 164 -98 302 218 54 134 chr11 67225072 67225289 -83558264 + MLT1J LTR MaLR 6 166 -284 237 289 40 0 chr11 67226192 67226268 -83557285 + MIR SINE MIR 61 139 -69 205 224 179 15 chr11 67226290 67226357 -83557196 - MER5A DNA MER1_type -1 188 111 * 351 204 58 58 chr11 67226297 67226400 -83557153 + MER5B DNA MER1_type 20 122 -56 200 226 210 0 chr11 67226980 67227042 -83556511 + MIR SINE MIR 82 156 -106 274 276 0 0 chr11 67227052 67227110 -83556443 - MIR SINE MIR -4 258 201 923 200 98 49 chr11 67227111 67227356 -83556197 + MIR SINE MIR 6 262 0 197 309 55 45 chr11 67227371 67227481 -83556072 + MIR SINE MIR 146 256 -6 233 201 201 79 chr11 67227490 67227629 -83555924 - MIR SINE MIR -75 187 32 2283 81 0 3 chr11 67227678 67227993 -83555560 - AluSc SINE Alu 0 314 1 285 221 123 33 chr11 67228718 67228840 -83554713 + Charlie8 DNA MER1_type 38 170 -2247 485 287 21 7 chr11 67229069 67229212 -83554341 - MIR SINE MIR -91 171 27 590 231 123 15 chr11 67229392 67229478 -83554075 - MIR SINE MIR -7 255 180 2469 74 0 0 chr11 67229478 67229774 -83553779 - AluSg SINE Alu -14 296 1 590 231 123 15 chr11 67229774 67229890 -83553663 - MIR SINE MIR -82 180 31 351 231 73 0 chr11 67230242 67230349 -83553204 + MIR3 SINE MIR 42 154 -54 364 270 93 62 chr11 67230700 67230926 -83552627 + L2 LINE L2 3039 3271 -1 483 275 4 2 chr11 67231921 67232060 -83551493 + MER5A DNA MER1_type 6 156 -33 360 250 179 26 chr11 67232536 67232692 -83550861 - MIR SINE MIR -6 256 77 180 108 108 0 chr11 67232780 67232817 -83550736 - MIR SINE MIR -117 145 105 599 202 71 54 chr11 67232899 67233067 -83550486 + MIR SINE MIR 88 258 -4 2345 111 0 13 chr11 67234243 67234559 -83548994 + AluSx SINE Alu 1 312 0 2294 80 23 7 chr11 67236354 67236653 -83546900 - AluSc SINE Alu -5 304 1 373 238 21 77 chr11 67236825 67236968 -83546585 + MIR SINE MIR 16 150 -58 208 179 89 36 chr11 67237002 67237058 -83546495 + MER5A DNA MER1_type 109 167 -22 923 212 5 5 chr11 67237284 67237473 -83546080 + MER5A DNA MER1_type 1 189 0 4830 134 77 15 chr11 67237648 67238497 -83545056 - MER4D LTR ERV1 -2 901 1 210 253 87 100 chr11 67238501 67238651 -83544902 + MIR3 SINE MIR 7 154 -54 1760 170 84 14 chr11 67238655 67238673 -83544880 - MLT1B LTR MaLR -4 386 371 3800 154 74 41 chr11 67238673 67239427 -83544126 - MER4E LTR ERV1 0 779 1 1760 170 84 14 chr11 67239427 67239767 -83543786 - MLT1B LTR MaLR -19 371 3 4587 108 52 55 chr11 67240125 67240322 -83543231 - MER4E LTR ERV1 0 779 583 1564 171 3 49 chr11 67240322 67240649 -83542904 + AluSx SINE Alu 1 312 0 4587 108 52 55 chr11 67240649 67241232 -83542321 - MER4E LTR ERV1 -196 583 1 921 71 31 0 chr11 67241275 67241402 -83542151 - MER4E LTR ERV1 0 766 636 329 304 131 47 chr11 67241422 67241613 -83541940 + L2 LINE L2 3107 3313 0 2922 114 23 50 chr11 67241618 67242127 -83541426 - LTR8A LTR ERV1 0 727 149 5079 41 0 0 chr11 67242127 67242718 -83540835 - LTR10C LTR ERV1 0 591 1 2922 114 23 50 chr11 67242718 67242864 -83540689 - LTR8A LTR ERV1 -578 149 1 64 14 0 0 chr11 67243006 67243077 -83540476 + AT_rich Low_complexity Low_complexity 1 71 0 2736 209 44 17 chr11 67243531 67244124 -83539429 + L1M1 LINE L1 12 620 -6945 * 7165 133 27 3 chr11 67244116 67246246 -83537307 + L1MA2 LINE L1 4020 6204 -100 508 189 38 30 chr11 67246329 67246461 -83537092 - LTR56 LTR ERV1 -304 141 9 2187 149 72 0 chr11 67246935 67247311 -83536242 - MER57A LTR ERV1 0 403 1 909 288 71 24 chr11 67247847 67248395 -83535158 + L1M4 LINE L1 4490 5063 -1083 987 102 8 0 chr11 67248395 67248523 -83535030 + AluY SINE Alu 1 129 -182 200 297 40 20 chr11 67248539 67248640 -83534913 - L2 LINE L2 -3 3310 3208 201 83 24 71 chr11 67248961 67249045 -83534508 + (CGGG)n Simple_repeat Simple_repeat 2 81 0 388 138 12 38 chr11 67249060 67249220 -83534333 + (CCGG)n Simple_repeat Simple_repeat 4 159 0 204 135 0 0 chr11 67249879 67249916 -83533637 + (GGGGA)n Simple_repeat Simple_repeat 3 39 0 222 128 0 0 chr11 67250000 67250039 -83533514 + (GAAA)n Simple_repeat Simple_repeat 1 39 0 27 0 0 0 chr11 67251846 67251873 -83531680 + GC_rich Low_complexity Low_complexity 1 27 0 234 0 0 0 chr11 67252728 67252754 -83530799 + (A)n Simple_repeat Simple_repeat 1 26 0 1591 190 67 6 chr11 67252813 67253140 -83530413 - MER7A DNA MER2_type -1 345 1 1762 192 0 0 chr11 67253198 67253495 -83530058 + AluJb SINE Alu 2 298 -14 474 232 131 12 chr11 67253864 67254032 -83529521 - L2 LINE L2 -174 3139 2952 571 226 49 43 chr11 67254145 67254309 -83529244 + MER91B DNA MER1_type 1 165 -25 2216 108 0 0 chr11 67254310 67254598 -83528955 - AluSx SINE Alu -24 288 1 2042 205 32 103 chr11 67254724 67254995 -83528558 - L1MC4 LINE L1 -7 8035 7746 2442 85 0 0 chr11 67254995 67255301 -83528252 - AluY SINE Alu -5 306 1 2042 205 32 103 chr11 67255301 67255736 -83527817 - L1MC4 LINE L1 -296 7746 7379 388 267 158 24 chr11 67256263 67256428 -83527125 - MIR SINE MIR -56 206 20 1727 161 11 0 chr11 67256518 67256803 -83526750 + AluJo SINE Alu 1 288 -24 731 181 16 16 chr11 67257262 67257389 -83526164 + FLAM_A SINE Alu 2 128 -5 2195 98 20 3 chr11 67257972 67258268 -83525285 - AluSq SINE Alu -12 301 1 1690 134 16 4 chr11 67258269 67258523 -83525030 - AluSx SINE Alu -21 291 35 680 258 68 0 chr11 67258523 67258713 -83524840 - L1M4 LINE L1 -2016 4130 3928 270 219 0 0 chr11 67258749 67258813 -83524740 + (TATG)n Simple_repeat Simple_repeat 4 67 0 1874 132 0 66 chr11 67258817 67259135 -83524418 - AluJo SINE Alu -15 297 1 1840 87 24 4 chr11 67259223 67259476 -83524077 - AluY SINE Alu -13 298 41 1269 133 0 25 chr11 67259494 67259690 -83523863 - AluSx SINE Alu -121 191 1 3040 226 116 64 chr11 67259691 67260259 -83523294 - L1M4 LINE L1 -2300 3846 3309 1585 156 23 76 chr11 67260259 67260561 -83522992 + AluJo SINE Alu 12 297 -15 3040 226 116 64 chr11 67260561 67260772 -83522781 - L1M4 LINE L1 -2837 3309 3110 2394 101 0 0 chr11 67260772 67261080 -83522473 + AluSc SINE Alu 1 308 -1 3040 226 116 64 chr11 67261080 67261343 -83522210 - L1M4 LINE L1 -3036 3110 2862 2108 138 3 0 chr11 67261343 67261647 -83521906 + AluSx SINE Alu 1 305 -7 3040 226 116 64 chr11 67261647 67261898 -83521655 - L1M4 LINE L1 -3284 2862 2625 1489 122 28 125 chr11 67261898 67262218 -83521335 - AluJo SINE Alu -23 289 1 3040 226 116 64 chr11 67262218 67262444 -83521109 - L1M4 LINE L1 -3521 2625 2246 2299 106 0 0 chr11 67262456 67262759 -83520794 + AluSx SINE Alu 1 303 -9 846 190 57 25 chr11 67262761 67262919 -83520634 + AluJb SINE Alu 124 286 -26 1929 149 0 34 chr11 67262963 67263285 -83520268 + AluJb SINE Alu 1 311 -1 1525 176 69 7 chr11 67263394 67263700 -83519853 - MER7A DNA MER2_type -23 323 1 1762 192 0 0 chr11 67263758 67264055 -83519498 + AluJb SINE Alu 2 298 -14 474 232 131 12 chr11 67264424 67264592 -83518961 - L2 LINE L2 -174 3139 2952 571 226 49 43 chr11 67264705 67264869 -83518684 + MER91B DNA MER1_type 1 165 -25 2186 111 0 0 chr11 67264870 67265158 -83518395 - AluSx SINE Alu -24 288 1 2050 208 31 102 chr11 67265284 67265555 -83517998 - L1MC4 LINE L1 -7 8035 7746 2418 92 0 0 chr11 67265555 67265861 -83517692 - AluY SINE Alu -5 306 1 2050 208 31 102 chr11 67265861 67266296 -83517257 - L1MC4 LINE L1 -296 7746 7379 388 267 158 24 chr11 67266823 67266988 -83516565 - MIR SINE MIR -56 206 20 819 116 0 0 chr11 67267078 67267190 -83516363 + AluSq/x SINE Alu 1 112 -201 2053 118 7 7 chr11 67267401 67267698 -83515855 - AluSx SINE Alu -15 297 1 2280 92 3 3 chr11 67267710 67268003 -83515550 - AluSx SINE Alu -19 293 1 1741 165 11 0 chr11 67268035 67268320 -83515233 + AluJo SINE Alu 1 288 -24 731 181 16 16 chr11 67268779 67268906 -83514647 + FLAM_A SINE Alu 2 128 -5 2001 101 8 0 chr11 67269488 67269755 -83513798 - AluSp SINE Alu -13 300 32 2378 87 0 3 chr11 67269755 67270066 -83513487 - AluY SINE Alu -1 310 1 992 80 0 29 chr11 67270067 67270204 -83513349 - AluSg SINE Alu -176 134 2 2041 133 3 17 chr11 67270747 67271048 -83512505 + AluSq SINE Alu 4 300 -13 782 255 105 8 chr11 67271213 67271460 -83512093 - MER20B DNA MER1_type -489 294 24 1345 186 95 8 chr11 67273040 67273304 -83510249 + AluJb SINE Alu 1 287 -25 1087 136 0 0 chr11 67273304 67273451 -83510102 + AluSq/x SINE Alu 1 147 -165 2470 74 0 0 chr11 67273451 67273748 -83509805 + AluY SINE Alu 1 297 -14 226 236 0 18 chr11 67274270 67274325 -83509228 + (TATG)n Simple_repeat Simple_repeat 3 56 0 2501 69 0 3 chr11 67277006 67277309 -83506244 + AluY SINE Alu 2 303 -8 209 216 35 69 chr11 67277722 67277838 -83505715 + MER5C DNA MER1_type 189 300 -24 274 188 148 10 chr11 67278101 67278202 -83505351 + MIR SINE MIR 122 236 -26 279 180 16 16 chr11 67278218 67278279 -83505274 + L2 LINE L2 3251 3311 -2 413 263 7 66 chr11 67278390 67278542 -83505011 + MIR3 SINE MIR 27 169 -39 1842 119 0 96 chr11 67279123 67279319 -83504234 - AluSx SINE Alu -2 310 159 2500 74 3 6 chr11 67279319 67279630 -83503923 - AluY SINE Alu -1 310 1 1842 119 0 96 chr11 67279630 67279776 -83503777 - AluSx SINE Alu -153 159 1 201 250 88 44 chr11 67279838 67279906 -83503647 + L2 LINE L2 3198 3268 -4 1977 134 0 0 chr11 67279966 67280243 -83503310 - AluSx SINE Alu -35 277 1 2102 128 0 3 chr11 67280396 67280693 -83502860 + AluSx SINE Alu 1 296 -16 2643 45 0 3 chr11 67281372 67281681 -83501872 + AluY SINE Alu 1 308 -3 1780 170 6 25 chr11 67281726 67282044 -83501509 + AluJb SINE Alu 1 312 0 710 246 77 36 chr11 67282344 67282518 -83501035 + MIR SINE MIR 8 194 -68 2171 100 28 3 chr11 67282518 67282807 -83500746 + AluSx SINE Alu 1 296 -16 710 246 77 36 chr11 67282807 67282852 -83500701 + MIR SINE MIR 194 236 -26 2465 76 3 0 chr11 67283401 67283705 -83499848 - AluY SINE Alu -6 305 1 359 164 0 0 chr11 67284350 67284405 -83499148 - U6 snRNA snRNA -52 55 1 2174 102 0 43 chr11 67284917 67285242 -83498311 - AluSx SINE Alu -1 311 1 258 162 108 54 chr11 67285676 67285750 -83497803 - MIR SINE MIR -93 169 92 478 246 116 25 chr11 67285876 67286075 -83497478 + L2 LINE L2 1863 2079 -1235 1118 189 57 5 chr11 67286075 67286287 -83497266 - L1MB7 LINE L1 -39 6145 5923 213 39 0 0 chr11 67286293 67286319 -83497234 + (T)n Simple_repeat Simple_repeat 1 26 0 243 0 0 0 chr11 67286468 67286495 -83497058 + (A)n Simple_repeat Simple_repeat 1 27 0 1540 259 29 67 chr11 67286566 67287014 -83496539 - L1MEc LINE L1 -4490 1771 1308 2334 100 3 0 chr11 67287014 67287323 -83496230 - AluSg SINE Alu 0 310 1 1540 259 29 67 chr11 67287323 67287389 -83496164 - L1MEc LINE L1 -4953 1308 1241 2274 217 96 39 chr11 67287389 67287961 -83495592 + MER77 LTR ERV1 1 605 0 1540 259 29 67 chr11 67287961 67288136 -83495417 - L1MEc LINE L1 -5020 1241 1107 602 83 0 83 chr11 67288149 67288245 -83495308 - AluJ/FLAM SINE Alu -223 89 2 2367 261 95 42 chr11 67288249 67288771 -83494782 - L1MEc LINE L1 -5009 1061 568 1516 139 167 8 chr11 67288771 67289023 -83494530 - AluJb SINE Alu -10 292 1 2367 261 95 42 chr11 67289023 67289046 -83494507 - L1MEc LINE L1 -5502 568 548 2157 116 3 3 chr11 67289046 67289349 -83494204 - AluSg SINE Alu -7 303 1 2367 261 95 42 chr11 67289349 67289792 -83493761 - L1MEc LINE L1 -5522 548 20 2451 69 0 22 chr11 67290179 67290497 -83493056 + AluY SINE Alu 1 311 0 396 278 107 5 chr11 67290499 67290686 -83492867 + L1ME3A LINE L1 5691 5896 -274 393 296 119 6 chr11 67290981 67291140 -83492413 - L1MB7 LINE L1 -304 5817 5641 2348 93 0 3 chr11 67291140 67291441 -83492112 + AluSg SINE Alu 1 300 -10 1879 141 3 26 chr11 67291860 67292164 -83491389 + AluSp SINE Alu 1 297 -16 226 236 0 18 chr11 67292686 67292741 -83490812 + (TATG)n Simple_repeat Simple_repeat 3 56 0 2501 69 0 3 chr11 67295426 67295729 -83487824 + AluY SINE Alu 2 303 -8 406 148 0 0 chr11 67295799 67295860 -83487693 + U6 snRNA snRNA 4 64 -43 1204 189 156 36 chr11 67295928 67296235 -83487318 + MER2 DNA MER2_type 1 344 0 2612 62 0 0 chr11 67296285 67296593 -83486960 + AluY SINE Alu 1 308 -3 2415 93 0 3 chr11 67296656 67296967 -83486586 + AluSg SINE Alu 1 310 0 1641 168 34 3 chr11 67297311 67297603 -83485950 - AluJo SINE Alu -9 303 3 742 201 24 11 chr11 67297610 67297766 -83485787 + MSTB LTR MaLR 159 346 -80 312 264 69 0 chr11 67297767 67297854 -83485699 + MLT1-int LTR MaLR 1172 1264 -107 695 157 0 0 chr11 67297900 67298021 -83485532 + L1MC2 LINE L1 5821 5941 -403 2316 78 3 3 chr11 67298163 67298459 -83485094 - AluSc SINE Alu -13 296 1 826 184 0 0 chr11 67298534 67298659 -83484894 + AluSg/x SINE Alu 170 294 -18 1911 161 0 26 chr11 67298685 67298995 -83484558 + AluJb SINE Alu 1 302 -10 304 324 242 19 chr11 67299564 67299946 -83483607 - L2 LINE L2 -443 2871 2575 2053 101 3 60 chr11 67299946 67300263 -83483290 - AluSx SINE Alu -13 299 1 304 324 242 19 chr11 67300263 67300504 -83483049 - L2 LINE L2 -739 2575 2109 1607 176 28 7 chr11 67300846 67301136 -83482417 + AluJb SINE Alu 4 299 -13 2107 116 0 0 chr11 67301496 67301802 -83481751 + AluSq SINE Alu 1 306 0 1002 129 41 35 chr11 67301803 67301974 -83481579 + AluSg/x SINE Alu 136 307 -5 2431 95 0 0 chr11 67302089 67302395 -83481158 + AluSc SINE Alu 1 306 -3 2451 71 3 0 chr11 67302537 67302831 -83480722 - AluSp SINE Alu -18 295 1 2050 135 0 0 chr11 67302855 67303151 -83480402 - AluSq SINE Alu -17 296 1 59 0 0 0 chr11 67303217 67303276 -83480277 + AT_rich Low_complexity Low_complexity 1 59 0 1926 133 0 7 chr11 67303286 67303579 -83479974 + AluSx SINE Alu 1 291 -21 2432 66 0 0 chr11 67303705 67304007 -83479546 - AluY SINE Alu -9 302 1 1778 140 10 14 chr11 67304080 67304373 -83479180 - AluSx SINE Alu -14 298 7 1150 149 12 66 chr11 67304390 67304618 -83478935 - AluJo SINE Alu 0 311 72 189 0 0 0 chr11 67304618 67304639 -83478914 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1955 107 4 4 chr11 67304639 67304920 -83478633 - AluSq SINE Alu -32 281 1 1150 149 12 66 chr11 67304920 67304961 -83478592 - AluJo SINE Alu -237 74 54 196 262 66 0 chr11 67305119 67305180 -83478373 - MIR SINE MIR -109 153 89 332 237 151 11 chr11 67305292 67305385 -83478168 + L2 LINE L2 3138 3243 -29 461 218 184 0 chr11 67305575 67305722 -83477831 - MIR SINE MIR -68 194 21 1016 303 55 24 chr11 67307169 67307548 -83476005 - L2 LINE L2 -4 3309 2919 825 273 166 15 chr11 67307568 67307894 -83475659 - L2 LINE L2 -838 2476 2102 232 298 69 75 chr11 67307899 67308004 -83475549 - L2 LINE L2 -2 3311 3206 2152 104 7 0 chr11 67308004 67308301 -83475252 - AluSp SINE Alu -14 299 1 232 298 69 75 chr11 67308301 67308383 -83475170 - L2 LINE L2 -107 3206 3125 508 258 212 5 chr11 67308470 67308687 -83474866 - L2 LINE L2 -1208 2106 1845 1509 171 3 56 chr11 67309124 67309429 -83474124 + AluJo SINE Alu 4 292 -20 1077 141 0 27 chr11 67309431 67309615 -83473938 + AluJb SINE Alu 133 311 -1 793 190 7 0 chr11 67311341 67311483 -83472070 - AluJo SINE Alu -152 160 18 981 170 0 0 chr11 67311559 67311730 -83471823 + AluSg/x SINE Alu 136 306 -4 397 202 11 0 chr11 67311734 67311823 -83471730 + L1M4 LINE L1 2953 3042 -3104 1754 126 9 49 chr11 67311823 67311958 -83471595 + AluJb SINE Alu 1 140 -172 1968 99 38 3 chr11 67311958 67312250 -83471303 + AluSg SINE Alu 1 302 -8 1754 126 9 49 chr11 67312250 67312439 -83471114 + AluJb SINE Alu 140 312 0 261 0 0 0 chr11 67312593 67312622 -83470931 + (A)n Simple_repeat Simple_repeat 1 29 0 1767 97 0 90 chr11 67312627 67312948 -83470605 + AluSg SINE Alu 3 294 -16 2420 203 55 86 chr11 67312950 67313468 -83470085 + MER21B LTR ERV1 12 500 -363 2038 125 0 0 chr11 67313468 67313765 -83469788 - AluSx SINE Alu -15 297 1 2420 203 55 86 chr11 67313765 67314013 -83469540 + MER21B LTR ERV1 500 754 -109 423 241 71 0 chr11 67314685 67314797 -83468756 - L2 LINE L2 -7 3265 3146 521 88 0 0 chr11 67315416 67315484 -83468069 + AluS SINE Alu 2 69 -244 2357 72 0 10 chr11 67315912 67316216 -83467337 - AluY SINE Alu -10 301 1 2195 103 0 7 chr11 67316218 67316528 -83467025 - AluSq SINE Alu -5 308 1 443 235 15 15 chr11 67316562 67316694 -83466859 + L2 LINE L2 1977 2108 -1206 326 274 65 32 chr11 67316722 67316846 -83466707 + L2 LINE L2 3182 3309 -4 393 272 127 13 chr11 67316877 67317035 -83466518 + L2 LINE L2 2162 2337 -977 484 65 0 0 chr11 67317035 67317097 -83466456 + AluSc SINE Alu 233 294 -15 988 276 145 24 chr11 67317097 67317966 -83465587 + L2 LINE L2 2330 3312 -1 1870 121 24 7 chr11 67318264 67318553 -83465000 - AluSx SINE Alu -18 294 1 23 0 0 0 chr11 67320008 67320031 -83463522 + AT_rich Low_complexity Low_complexity 1 23 0 225 94 0 0 chr11 67320406 67320438 -83463115 + (T)n Simple_repeat Simple_repeat 1 32 0 1471 190 67 6 chr11 67320601 67320928 -83462625 - MER7A DNA MER2_type -1 345 1 1662 192 0 0 chr11 67320986 67321283 -83462270 + AluJb SINE Alu 2 298 -14 488 232 131 12 chr11 67321652 67321820 -83461733 - L2 LINE L2 -174 3139 2952 587 226 49 43 chr11 67321933 67322097 -83461456 + MER91B DNA MER1_type 1 165 -25 2114 108 0 0 chr11 67322098 67322386 -83461167 - AluSx SINE Alu -24 288 1 2006 206 32 103 chr11 67322512 67322783 -83460770 - L1MC4 LINE L1 -7 8035 7746 2339 85 0 0 chr11 67322783 67323089 -83460464 - AluY SINE Alu -5 306 1 2006 206 32 103 chr11 67323089 67323524 -83460029 - L1MC4 LINE L1 -296 7746 7379 403 267 158 24 chr11 67324051 67324216 -83459337 - MIR SINE MIR -56 206 20 1611 168 11 0 chr11 67324306 67324591 -83458962 + AluJo SINE Alu 1 288 -24 691 181 16 16 chr11 67325050 67325177 -83458376 + FLAM_A SINE Alu 2 128 -5 1905 101 8 0 chr11 67325759 67326026 -83457527 - AluSp SINE Alu -13 300 32 2274 87 0 3 chr11 67326026 67326337 -83457216 - AluY SINE Alu -1 310 1 941 80 0 29 chr11 67326338 67326475 -83457078 - AluSg SINE Alu -176 134 2 1930 133 3 17 chr11 67327016 67327317 -83456236 + AluSq SINE Alu 4 300 -13 758 262 49 9 chr11 67327506 67327731 -83455822 - MER20B DNA MER1_type -526 257 24 1293 182 95 8 chr11 67329311 67329575 -83453978 + AluJb SINE Alu 1 287 -25 1052 129 0 0 chr11 67329575 67329722 -83453831 + AluSq/x SINE Alu 1 147 -165 2319 81 0 0 chr11 67329722 67330017 -83453536 + AluY SINE Alu 1 295 -16 283 314 69 82 chr11 67330289 67330448 -83453105 + MER91A DNA MER1_type 5 161 -35 1660 127 3 20 chr11 67330590 67330890 -83452663 + AluSq SINE Alu 1 295 -18 2434 67 0 0 chr11 67330890 67331189 -83452364 + AluY SINE Alu 1 299 -12 872 158 0 76 chr11 67331189 67331373 -83452180 + AluSg/x SINE Alu 132 301 -9 1969 131 3 3 chr11 67331394 67331692 -83451861 - AluSx SINE Alu -14 298 1 2245 99 0 3 chr11 67331709 67332011 -83451542 - AluSx SINE Alu -11 301 1 606 186 69 7 chr11 67332011 67332156 -83451397 + HsTC2 DNA Tc2 1745 1898 0 995 166 0 18 chr11 67332449 67332618 -83450935 - FRAM SINE Alu 0 166 1 25 51 0 0 chr11 67332628 67332667 -83450886 + AT_rich Low_complexity Low_complexity 1 39 0 1115 123 0 6 chr11 67332667 67332830 -83450723 - AluSg/x SINE Alu -25 285 124 2253 69 0 13 chr11 67332830 67333133 -83450420 - AluY SINE Alu -12 299 1 59 0 0 0 chr11 67333199 67333258 -83450295 + AT_rich Low_complexity Low_complexity 1 59 0 1926 133 0 7 chr11 67333268 67333561 -83449992 + AluSx SINE Alu 1 291 -21 2289 86 0 3 chr11 67333686 67333989 -83449564 - AluY SINE Alu -9 302 1 2162 99 0 6 chr11 67334109 67334423 -83449130 + AluSx SINE Alu 1 312 0 1144 121 0 11 chr11 67334505 67334517 -83449036 + AluSq SINE Alu 124 135 -178 2024 101 3 20 chr11 67334517 67334814 -83448739 + AluSq SINE Alu 1 292 -21 1144 121 0 11 chr11 67334814 67334983 -83448570 + AluSq SINE Alu 135 303 -10 1790 154 3 16 chr11 67335829 67336135 -83447418 - AluJo SINE Alu -10 302 1 1141 94 6 0 chr11 67336381 67336541 -83447012 + AluSg/x SINE Alu 135 295 -15 1530 130 52 33 chr11 67336570 67336877 -83446676 + AluSq SINE Alu 1 313 0 300 83 0 0 chr11 67336983 67337031 -83446522 + (GA)n Simple_repeat Simple_repeat 2 49 0 1487 136 59 49 chr11 67337045 67337200 -83446353 - AluJo SINE Alu -22 290 129 2037 133 13 0 chr11 67337200 67337501 -83446052 - AluSx SINE Alu -2 310 6 1487 136 59 49 chr11 67337501 67337632 -83445921 - AluJo SINE Alu -183 129 1 1331 195 37 0 chr11 67337657 67337898 -83445655 - MER58 DNA MER1_type -2166 254 5 22 0 0 0 chr11 67337922 67337944 -83445609 + AT_rich Low_complexity Low_complexity 1 22 0 1209 227 262 31 chr11 67338132 67338645 -83444908 + L2 LINE L2 2442 2836 -477 2217 80 17 0 chr11 67338645 67338934 -83444619 - AluSp SINE Alu -19 294 1 1209 227 262 31 chr11 67338934 67339104 -83444449 + L2 LINE L2 2836 3280 -33 924 272 95 74 chr11 67339174 67339976 -83443577 + HAL1 LINE L1 56 874 -1633 2062 104 0 3 chr11 67339991 67340279 -83443274 + AluSx SINE Alu 23 309 -3 1891 144 0 23 chr11 67340279 67340584 -83442969 + AluSx SINE Alu 1 298 -14 542 210 48 0 chr11 67340610 67340734 -83442819 + MER46C DNA MER2_type 80 209 -129 1041 105 0 0 chr11 67340744 67340887 -83442666 - AluSg SINE Alu -167 143 1 487 281 126 74 chr11 67340898 67340969 -83442584 - L1M4 LINE L1 -1127 5019 4953 1600 141 0 29 chr11 67340969 67341245 -83442308 - AluSx SINE Alu -6 306 39 487 281 126 74 chr11 67341245 67341578 -83441975 - L1M4 LINE L1 -1193 4953 4594 258 288 55 0 chr11 67341612 67341685 -83441868 + MIR SINE MIR 185 261 -1 482 277 153 18 chr11 67341702 67341976 -83441577 - L1M4 LINE L1 -1624 4522 4212 341 206 27 0 chr11 67342081 67342154 -83441399 + MLT1C LTR MaLR 3 77 -390 1306 83 0 0 chr11 67342619 67342788 -83440765 + AluSg SINE Alu 1 169 -141 524 117 0 13 chr11 67342788 67342865 -83440688 + AluSc SINE Alu 219 294 -15 723 243 137 20 chr11 67342865 67343216 -83440337 + L2 LINE L2 2666 3060 -253 1001 175 18 31 chr11 67344355 67344578 -83438975 + AluJo SINE Alu 1 220 -92 352 118 0 0 chr11 67344578 67344629 -83438924 + AluSq/x SINE Alu 86 136 -166 1747 153 7 10 chr11 67344629 67344930 -83438623 + AluSx SINE Alu 1 300 -12 3274 158 72 20 chr11 67344930 67345587 -83437966 + L1MC2 LINE L1 5635 6325 -19 2256 67 20 10 chr11 67345593 67345891 -83437662 - AluY SINE Alu -10 301 1 2177 79 3 10 chr11 67346108 67346411 -83437142 - AluSp SINE Alu -12 301 1 1459 166 55 0 chr11 67346422 67346693 -83436860 - AluJb SINE Alu -26 286 1 271 261 22 33 chr11 67347337 67347429 -83436124 + MLT1C LTR MaLR 35 125 -442 1895 138 85 11 chr11 67347463 67347826 -83435727 + L1MC3 LINE L1 7217 7606 -179 2186 82 7 3 chr11 67348069 67348363 -83435190 + AluY SINE Alu 1 295 -16 1155 174 5 0 chr11 67348782 67348978 -83434575 + AluJo SINE Alu 1 197 -115 593 154 218 0 chr11 67349003 67349113 -83434440 - AluJb SINE Alu -23 289 156 2072 106 10 0 chr11 67349156 67349449 -83434104 + AluSg SINE Alu 1 296 -14 1512 156 13 39 chr11 67349729 67350036 -83433517 - AluJb SINE Alu 0 312 14 2103 97 6 35 chr11 67350100 67350419 -83433134 - AluSg SINE Alu 0 310 1 21 0 0 0 chr11 67352252 67352273 -83431280 + AT_rich Low_complexity Low_complexity 1 21 0 815 182 85 11 chr11 67353115 67353291 -83430262 - MER5A DNA MER1_type 0 189 1 491 300 79 16 chr11 67353941 67354131 -83429422 + MIR3 SINE MIR 4 205 -3 1559 146 0 25 chr11 67355256 67355496 -83428057 - AluSx SINE Alu -42 270 37 410 307 151 36 chr11 67355496 67355828 -83427725 - L1M4 LINE L1 -1183 4963 4594 241 288 55 0 chr11 67355862 67355935 -83427618 + MIR SINE MIR 185 261 -1 492 277 153 18 chr11 67355952 67356226 -83427327 - L1M4 LINE L1 -1624 4522 4212 326 206 27 0 chr11 67356331 67356404 -83427149 + MLT1C LTR MaLR 3 77 -390 1399 83 0 0 chr11 67356869 67357038 -83426515 + AluSg SINE Alu 1 169 -141 478 130 0 13 chr11 67357038 67357115 -83426438 + AluSc SINE Alu 219 294 -15 659 254 132 14 chr11 67357115 67357466 -83426087 + L2 LINE L2 2666 3060 -253 1141 170 18 31 chr11 67358605 67358828 -83424725 + AluJo SINE Alu 1 220 -92 356 98 0 0 chr11 67358828 67358879 -83424674 + AluSg/x SINE Alu 84 134 -166 2091 140 7 0 chr11 67358879 67359171 -83424382 + AluSx SINE Alu 1 294 -18 3107 161 71 20 chr11 67359175 67359834 -83423719 + L1MC2 LINE L1 5633 6325 -19 2327 76 0 0 chr11 67359840 67360117 -83423436 - AluY SINE Alu -10 301 25 2184 111 0 4 chr11 67360115 67360395 -83423158 - AluSx SINE Alu -33 279 1 * 1541 87 0 0 chr11 67360397 67360582 -83422971 - AluSp SINE Alu -15 298 114 1115 178 108 3 chr11 67360604 67360919 -83422634 - L1MEc LINE L1 -5468 928 581 1421 146 4 0 chr11 67360921 67361147 -83422406 - AluSx SINE Alu -85 227 1 2141 113 10 0 chr11 67361148 67361441 -83422112 - AluSq SINE Alu -17 296 1 387 249 41 145 chr11 67361463 67361639 -83421914 + L1MEc LINE L1 1211 1404 -4992 2573 54 0 0 chr11 67361639 67361936 -83421617 + AluY SINE Alu 1 297 -14 387 249 41 145 chr11 67361936 67362148 -83421405 + L1MEc LINE L1 1404 1524 -4872 2299 109 7 0 chr11 67362148 67362450 -83421103 + AluSx SINE Alu 1 304 -8 387 249 41 145 chr11 67362450 67362626 -83420927 + L1MEc LINE L1 1524 1717 -4679 2277 115 3 0 chr11 67362627 67362932 -83420621 + AluSg SINE Alu 1 306 -4 367 286 61 34 chr11 67363065 67363212 -83420341 + HAL1 LINE L1 496 646 -1861 306 252 84 84 chr11 67363207 67363362 -83420191 + HAL1 LINE L1 2334 2488 -19 * 2364 94 0 3 chr11 67363555 67363854 -83419699 - AluSg SINE Alu -12 298 1 1462 222 41 0 chr11 67365043 67365336 -83418217 + AluJo SINE Alu 1 305 -7 2034 126 3 7 chr11 67365351 67365636 -83417917 + AluSx SINE Alu 1 284 -28 831 29 0 0 chr11 67365636 67365740 -83417813 + L1PA3 LINE L1 6051 6154 -1 1513 227 69 26 chr11 67365790 67366322 -83417231 + L1ME LINE L1 5106 5700 -462 703 214 0 0 chr11 67366322 67366448 -83417105 + FLAM_A SINE Alu 1 126 -7 1513 227 69 26 chr11 67366448 67366513 -83417040 + L1ME LINE L1 5700 5761 -401 192 77 0 0 chr11 67366540 67366566 -83416987 + (TA)n Simple_repeat Simple_repeat 2 27 0 294 258 41 21 chr11 67366567 67366630 -83416923 - MIR SINE MIR -73 189 122 1977 135 10 32 chr11 67366630 67366942 -83416611 + AluSx SINE Alu 1 305 -7 294 258 41 21 chr11 67366942 67366975 -83416578 - MIR SINE MIR -140 122 91 603 219 16 0 chr11 67367160 67367288 -83416265 + FLAM_C SINE Alu 1 130 -3 2244 117 7 0 chr11 67367298 67367606 -83415947 + AluSp SINE Alu 3 312 -1 2232 128 3 3 chr11 67367619 67367931 -83415622 + AluSx SINE Alu 1 312 0 1702 178 21 0 chr11 67368176 67368463 -83415090 - AluJb SINE Alu -19 293 1 270 194 48 0 chr11 67368478 67368540 -83415013 - MER113 DNA MER1_type? -415 106 42 273 259 35 0 chr11 67368576 67368661 -83414892 - MER113 DNA MER1_type? -415 106 19 1740 162 4 11 chr11 67368812 67369090 -83414463 - AluJo SINE Alu -16 296 21 628 271 64 11 chr11 67369437 67369625 -83413928 + MLT1J LTR MaLR 1 198 -313 2206 109 3 3 chr11 67369946 67370239 -83413314 + AluSq SINE Alu 1 293 -20 2208 94 52 0 chr11 67370307 67370595 -83412958 - AluSg SINE Alu -7 303 1 2233 109 10 7 chr11 67370754 67371058 -83412495 + AluSx SINE Alu 1 305 -7 1454 171 68 14 chr11 67371294 67371574 -83411979 + AluSx SINE Alu 1 295 -17 711 144 8 8 chr11 67371687 67371805 -83411748 - AluJb SINE Alu -24 288 171 1828 76 18 0 chr11 67371809 67372034 -83411519 - AluSq SINE Alu -84 229 1 300 253 179 0 chr11 67372158 67372253 -83411300 + MIR SINE MIR 34 145 -63 403 100 0 0 chr11 67372264 67372324 -83411229 + Alu SINE Alu 3 62 -256 419 134 0 15 chr11 67372337 67372404 -83411149 - AluJ/FLAM SINE Alu -244 68 3 874 163 58 17 chr11 67372677 67372849 -83410704 + Tigger7 DNA MER2_type 83 261 -472 490 196 11 0 chr11 67372848 67372940 -83410613 + Tigger7 DNA MER2_type 2494 2586 -1 * 867 157 0 0 chr11 67373031 67373165 -83410388 - AluSg/x SINE Alu -17 295 162 2105 139 0 10 chr11 67373176 67373479 -83410074 + AluSx SINE Alu 1 300 -12 921 179 22 70 chr11 67373493 67373722 -83409831 - MER20 DNA MER1_type -1 218 1 207 0 0 0 chr11 67374488 67374511 -83409042 + (T)n Simple_repeat Simple_repeat 1 23 0 1999 134 0 0 chr11 67374842 67375118 -83408435 - AluSx SINE Alu -3 309 34 2448 86 0 3 chr11 67375133 67375437 -83408116 - AluSx SINE Alu -9 303 1 2445 88 3 0 chr11 67375763 67376060 -83407493 + AluSq SINE Alu 8 305 -8 365 121 15 15 chr11 67376183 67376249 -83407304 - MLT1D LTR MaLR 0 505 440 2719 26 3 0 chr11 67376251 67376553 -83407000 + AluY SINE Alu 1 303 -8 1074 119 0 0 chr11 67376565 67376708 -83406845 + FRAM SINE Alu 18 160 -16 1709 191 88 38 chr11 67376710 67377133 -83406420 - MLT1D LTR MaLR -61 444 1 292 204 176 28 chr11 67377162 67377270 -83406283 + L2 LINE L2 3149 3272 0 1753 164 25 0 chr11 67377399 67377674 -83405879 - AluJo SINE Alu -13 299 18 1489 188 12 67 chr11 67377700 67378030 -83405523 + AluJo SINE Alu 1 312 0 2519 72 0 10 chr11 67379236 67379540 -83404013 - AluY SINE Alu -10 301 1 2384 100 0 7 chr11 67379542 67379852 -83403701 - AluSq SINE Alu -5 308 1 420 235 15 15 chr11 67379886 67380018 -83403535 + L2 LINE L2 1977 2108 -1206 305 274 65 32 chr11 67380046 67380170 -83403383 + L2 LINE L2 3182 3309 -4 372 304 114 0 chr11 67380201 67380359 -83403194 + L2 LINE L2 2162 2337 -977 460 65 0 0 chr11 67380359 67380421 -83403132 + AluSc SINE Alu 233 294 -15 925 276 145 24 chr11 67380421 67381290 -83402263 + L2 LINE L2 2330 3312 -1 2034 121 24 7 chr11 67381588 67381878 -83401675 - AluSx SINE Alu -17 295 1 23 0 0 0 chr11 67383336 67383359 -83400194 + AT_rich Low_complexity Low_complexity 1 23 0 2476 84 0 22 chr11 67383742 67384062 -83399491 - AluSq SINE Alu 0 313 1 2254 79 45 7 chr11 67384561 67384852 -83398701 - AluSx SINE Alu -10 302 1 396 241 71 0 chr11 67385470 67385582 -83397971 + L2 LINE L2 3146 3265 -7 2297 209 52 83 chr11 67386254 67386502 -83397051 - MER21B LTR ERV1 -109 754 500 2140 125 7 0 chr11 67386502 67386798 -83396755 + AluSx SINE Alu 1 298 -14 2297 209 52 83 chr11 67386798 67387316 -83396237 - MER21B LTR ERV1 -363 500 12 1918 97 0 90 chr11 67387318 67387639 -83395914 - AluSg SINE Alu -16 294 3 2312 98 0 13 chr11 67387644 67387949 -83395604 - AluSq SINE Alu -12 301 1 340 210 1 49 chr11 67388835 67388927 -83394626 - MIR SINE MIR -63 145 64 2217 113 10 3 chr11 67388929 67389238 -83394315 + AluSx SINE Alu 1 311 -1 1543 139 85 19 chr11 67389263 67389522 -83394031 - AluJo SINE Alu -36 276 1 1674 154 64 24 chr11 67389522 67389819 -83393734 - AluJb SINE Alu -2 310 1 2176 108 4 0 chr11 67389843 67390158 -83393395 + AluSg SINE Alu 1 316 0 21 57 0 0 chr11 67390158 67390193 -83393360 + AT_rich Low_complexity Low_complexity 1 35 0 1083 240 213 7 chr11 67390685 67391098 -83392455 + L2 LINE L2 2428 2925 -389 357 241 14 0 chr11 67391129 67391220 -83392333 - AluJ/FLAM SINE Alu -234 68 1 641 270 79 62 chr11 67391220 67391423 -83392130 + L2 LINE L2 3005 3217 -96 2086 97 0 31 chr11 67391423 67391743 -83391810 - AluSq SINE Alu 0 312 2 641 270 79 62 chr11 67391743 67391842 -83391711 + L2 LINE L2 3217 3313 0 951 147 5 38 chr11 67392145 67392225 -83391328 - MER45A DNA AcHobo -1403 178 97 2302 102 0 3 chr11 67392225 67392519 -83391034 + AluSx SINE Alu 1 293 -19 951 147 5 38 chr11 67392519 67392622 -83390931 - MER45A DNA AcHobo -1484 97 1 331 256 12 0 chr11 67393638 67393720 -83389833 - MIR3 SINE MIR -22 186 104 275 276 31 41 chr11 67393823 67393921 -83389632 - MIR SINE MIR -77 131 35 204 260 10 29 chr11 67394860 67394964 -83388589 + (CGCGG)n Simple_repeat Simple_repeat 3 104 0 2204 100 31 0 chr11 67397837 67398128 -83385425 - AluSc SINE Alu -9 300 1 24 0 0 0 chr11 67399227 67399251 -83384302 + AT_rich Low_complexity Low_complexity 1 24 0 1848 80 8 8 chr11 67399254 67399492 -83384061 - AluSx SINE Alu -19 293 56 1819 178 0 13 chr11 67399820 67400118 -83383435 + AluJb SINE Alu 1 294 -18 2116 121 7 3 chr11 67401355 67401644 -83381909 - AluSx SINE Alu -21 291 2 1751 155 3 79 chr11 67401857 67401986 -83381567 + AluJb SINE Alu 1 138 -174 2115 112 21 3 chr11 67401986 67402271 -83381282 - AluSg SINE Alu -20 290 1 2532 54 0 3 chr11 67402279 67402577 -83380976 - AluY SINE Alu -14 297 1 1751 155 3 79 chr11 67402577 67402755 -83380798 + AluJb SINE Alu 145 293 -19 2208 96 9 53 chr11 67403996 67404171 -83379382 - AluSc SINE Alu -1 308 152 2494 58 0 35 chr11 67404171 67404482 -83379071 - AluY SINE Alu -11 300 1 2208 96 9 53 chr11 67404482 67404628 -83378925 - AluSc SINE Alu -157 152 1 830 156 7 22 chr11 67404637 67404772 -83378781 - FRAM SINE Alu -23 153 21 715 193 99 80 chr11 67405071 67405092 -83378461 + MIR SINE MIR 15 34 -228 2196 129 0 0 chr11 67405092 67405387 -83378166 + AluSx SINE Alu 1 295 -17 715 193 99 80 chr11 67405387 67405577 -83377976 + MIR SINE MIR 34 230 -32 2107 86 7 70 chr11 67405758 67406089 -83377464 - AluSq SINE Alu 0 312 1 588 205 31 0 chr11 67406446 67406573 -83376980 - FLAM_C SINE Alu 0 143 13 462 151 0 47 chr11 67406962 67407048 -83376505 + FLAM_A SINE Alu 41 122 -20 6787 174 63 33 chr11 67407604 67408739 -83374814 + Charlie1 DNA MER1_type 5 1201 -1560 2405 72 24 0 chr11 67408739 67409030 -83374523 + AluSq SINE Alu 1 298 -15 6787 174 63 33 chr11 67409030 67409453 -83374100 + Charlie1 DNA MER1_type 1201 1610 -1151 2153 113 0 0 chr11 67409454 67409795 -83373758 - AluSx SINE Alu 0 341 1 342 0 0 0 chr11 67409809 67409847 -83373706 + (TG)n Simple_repeat Simple_repeat 1 38 0 1045 184 32 60 chr11 67409852 67410134 -83373419 - AluSx SINE Alu -38 274 1 2083 122 7 7 chr11 67410506 67410802 -83372751 - AluSx SINE Alu -16 296 1 2457 84 3 0 chr11 67411128 67411425 -83372128 + AluSq SINE Alu 8 305 -8 368 121 15 15 chr11 67411548 67411614 -83371939 - MLT1D LTR MaLR 0 505 440 2685 23 0 3 chr11 67411616 67411916 -83371637 + AluY SINE Alu 1 299 -12 424 62 215 0 chr11 67411926 67411991 -83371562 + AluY SINE Alu 72 150 -161 32 0 0 0 chr11 67412116 67412148 -83371405 + AT_rich Low_complexity Low_complexity 1 32 0 427 168 84 9 chr11 67412195 67412302 -83371251 + ORSL DNA AcHobo 141 255 -20 612 90 0 33 chr11 67412818 67412940 -83370613 + (GGA)n Simple_repeat Simple_repeat 2 119 0 256 239 0 14 chr11 67412967 67413038 -83370515 + GA-rich Low_complexity Low_complexity 2 71 0 393 164 0 0 chr11 67413065 67413138 -83370415 + GA-rich Low_complexity Low_complexity 2 74 0 2231 96 34 0 chr11 67413433 67413725 -83369828 + AluSp SINE Alu 1 302 -11 21 0 0 0 chr11 67414336 67414357 -83369196 + AT_rich Low_complexity Low_complexity 1 21 0 2301 73 38 0 chr11 67414357 67414644 -83368909 - AluSq SINE Alu -15 298 1 451 38 0 0 chr11 67414644 67414697 -83368856 - AluSg/x SINE Alu -175 134 82 1182 191 14 5 chr11 67414698 67414913 -83368640 - AluJo SINE Alu -95 217 1 797 180 0 0 chr11 67414919 67415069 -83368484 - L1MB1 LINE L1 0 6168 6019 2203 124 0 3 chr11 67415069 67415368 -83368185 + AluSx SINE Alu 1 298 -14 2442 77 0 3 chr11 67415371 67415671 -83367882 + AluSg1 SINE Alu 1 299 -10 1300 112 91 0 chr11 67415756 67415953 -83367600 + AluSg/x SINE Alu 84 298 -14 1576 123 5 0 chr11 67415979 67416191 -83367362 + AluSx SINE Alu 1 213 -99 749 90 0 0 chr11 67416197 67416308 -83367245 - L1M3 LINE L1 -742 5438 5328 688 135 50 78 chr11 67416308 67416449 -83367104 - AluJo SINE Alu -174 138 2 2185 105 7 0 chr11 67416481 67416775 -83366778 - AluSq SINE Alu -17 296 1 2279 102 7 0 chr11 67416820 67417115 -83366438 - AluSx SINE Alu -15 297 1 267 31 0 0 chr11 67417117 67417149 -83366404 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1684 176 14 0 chr11 67417149 67417428 -83366125 - AluJo SINE Alu -25 287 5 501 242 0 0 chr11 67417433 67417553 -83366000 - L1MC4 LINE L1 -1035 7007 6888 447 256 67 18 chr11 67417565 67417729 -83365824 - L1MC4 LINE L1 -1414 6628 6457 22 56 0 0 chr11 67417932 67417968 -83365585 + AT_rich Low_complexity Low_complexity 1 36 0 2088 121 0 14 chr11 67417974 67418264 -83365289 + AluSx SINE Alu 1 286 -26 237 274 21 11 chr11 67418322 67418417 -83365136 - L1P LINE L1 -1169 4977 4882 366 381 16 5 chr11 67418486 67418675 -83364878 - L1M4 LINE L1 -1350 4796 4606 2159 151 0 0 chr11 67418698 67419010 -83364543 + AluSx SINE Alu 1 312 0 4710 81 5 16 chr11 67419019 67419577 -83363976 - LTR10E LTR ERV1 0 633 81 2100 118 37 0 chr11 67419577 67419874 -83363679 - AluSx SINE Alu -4 308 1 4710 81 5 16 chr11 67419874 67419955 -83363598 - LTR10E LTR ERV1 -552 81 1 1817 184 0 3 chr11 67420014 67420297 -83363256 - AluSx SINE Alu -25 287 6 1356 101 5 21 chr11 67420300 67420488 -83363065 - AluSq SINE Alu -128 185 1 1649 181 17 10 chr11 67420509 67420704 -83362849 - AluJo SINE Alu 0 312 113 2033 164 3 0 chr11 67420704 67421014 -83362539 + AluSx SINE Alu 1 311 -1 1649 181 17 10 chr11 67421014 67421117 -83362436 - AluJo SINE Alu -199 113 12 444 221 31 62 chr11 67421117 67421375 -83362178 - L1M4 LINE L1 -2869 3277 3028 204 40 0 0 chr11 67421376 67421401 -83362152 + (T)n Simple_repeat Simple_repeat 1 25 0 2092 136 3 3 chr11 67421517 67421818 -83361735 - AluSx SINE Alu -11 301 1 2417 104 0 0 chr11 67421829 67422136 -83361417 - AluSx SINE Alu -5 307 1 581 207 62 0 chr11 67422136 67422281 -83361272 + HsTC2 DNA Tc2 1745 1898 0 1020 166 0 18 chr11 67422574 67422743 -83360810 - FRAM SINE Alu 0 166 1 25 51 0 0 chr11 67422753 67422792 -83360761 + AT_rich Low_complexity Low_complexity 1 39 0 1144 130 0 0 chr11 67422792 67422946 -83360607 - AluSg/x SINE Alu -25 287 134 2252 80 36 13 chr11 67422946 67423247 -83360306 - AluY SINE Alu -3 308 1 880 263 102 75 chr11 67423645 67424203 -83359350 + MLT1K LTR MaLR 10 582 -6 2213 110 3 13 chr11 67424204 67424504 -83359049 + AluSx SINE Alu 1 297 -15 775 130 0 49 chr11 67424624 67424670 -83358883 + FLAM_C SINE Alu 2 49 -263 2493 107 28 6 chr11 67424670 67425026 -83358527 - THE1B LTR MaLR 0 364 1 775 130 0 49 chr11 67425026 67425102 -83358451 + FLAM_C SINE Alu 49 118 -194 2221 113 27 0 chr11 67425450 67425750 -83357803 - AluSx SINE Alu -4 308 1 1929 168 58 51 chr11 67425843 67426225 -83357328 + L1MB1 LINE L1 5497 5932 -236 1650 176 7 20 chr11 67426225 67426521 -83357032 + AluJo SINE Alu 1 292 -20 1929 168 58 51 chr11 67426521 67426622 -83356931 + L1MB1 LINE L1 5932 6031 -137 2479 64 0 3 chr11 67426622 67426918 -83356635 - AluY SINE Alu -16 295 1 2182 122 0 3 chr11 67426918 67427213 -83356340 - AluSq SINE Alu -18 295 2 2363 101 0 3 chr11 67427215 67427522 -83356031 - AluSq SINE Alu -7 306 1 830 138 85 0 chr11 67427524 67427654 -83355899 - AluJb SINE Alu -171 141 1 316 187 93 0 chr11 67427667 67427742 -83355811 - HsTC2 DNA Tc2 -159 1739 1658 538 291 123 13 chr11 67427742 67427969 -83355584 - MER90 LTR ERV1 0 575 324 1083 159 0 0 chr11 67427969 67428132 -83355421 - AluSg/x SINE Alu -13 297 135 657 165 130 0 chr11 67428192 67428307 -83355246 + FLAM_C SINE Alu 1 130 -3 2348 85 14 0 chr11 67428333 67428627 -83354926 + AluSp SINE Alu 1 298 -15 2116 113 3 10 chr11 67428627 67428928 -83354625 + AluSg1 SINE Alu 1 299 -10 309 270 14 0 chr11 67429163 67429237 -83354316 + MIR SINE MIR 77 151 -111 1354 216 52 92 chr11 67429284 67429322 -83354231 - LTR33A LTR ERVL 0 523 485 1935 116 7 46 chr11 67429322 67429625 -83353928 - AluSx SINE Alu -21 291 1 1354 216 52 92 chr11 67429625 67430128 -83353425 - LTR33A LTR ERVL -38 485 4 2417 74 10 0 chr11 67430249 67430546 -83353007 + AluSc SINE Alu 1 300 -9 1281 131 16 0 chr11 67431412 67431595 -83351958 - AluSx SINE Alu -126 186 1 1243 152 0 0 chr11 67431597 67431794 -83351759 - L1MCa LINE L1 -6196 230 34 904 92 0 17 chr11 67432031 67432201 -83351352 - AluSg/x SINE Alu 0 310 175 1460 226 3 10 chr11 67432203 67432500 -83351053 - AluJo SINE Alu -17 295 1 2264 117 0 0 chr11 67432840 67433139 -83350414 + AluSx SINE Alu 1 299 -13 2251 112 0 3 chr11 67433210 67433506 -83350047 + AluSg SINE Alu 1 295 -15 491 285 62 39 chr11 67433581 67433623 -83349930 - L1MEd LINE L1 -1176 1314 1274 2089 116 9 35 chr11 67433623 67433942 -83349611 - AluSx SINE Alu -1 311 1 491 285 62 39 chr11 67433942 67433958 -83349595 - L1MEd LINE L1 -1216 1274 1260 2375 100 0 7 chr11 67433958 67434259 -83349294 - AluSx SINE Alu -13 299 1 491 285 62 39 chr11 67434259 67434467 -83349086 - L1MEd LINE L1 -1230 1260 952 2178 116 7 0 chr11 67434492 67434786 -83348767 - AluSx SINE Alu -16 296 1 278 321 143 0 chr11 67434935 67435047 -83348506 + L2 LINE L2 2244 2371 -943 1203 299 43 20 chr11 67435047 67435485 -83348068 - MLT1K LTR MaLR -5 583 136 451 296 0 0 chr11 67435490 67435615 -83347938 - MLT1K LTR MaLR -262 326 202 433 111 122 11 chr11 67435643 67435733 -83347820 + MER53 DNA DNA 1 100 -89 532 278 174 38 chr11 67436146 67436491 -83347062 + MLT1L LTR MaLR 206 597 -18 301 330 118 33 chr11 67436533 67436863 -83346690 + L2 LINE L2 2366 2723 -591 354 156 0 0 chr11 67436864 67436928 -83346625 + (CA)n Simple_repeat Simple_repeat 2 65 0 2358 62 38 3 chr11 67436972 67437262 -83346291 - AluY SINE Alu -11 300 1 880 263 102 75 chr11 67437660 67438218 -83345335 + MLT1K LTR MaLR 10 582 -6 2204 110 3 13 chr11 67438219 67438518 -83345035 + AluSx SINE Alu 1 296 -16 775 130 0 49 chr11 67438639 67438685 -83344868 + FLAM_C SINE Alu 2 49 -263 2493 107 28 6 chr11 67438685 67439041 -83344512 - THE1B LTR MaLR 0 364 1 775 130 0 49 chr11 67439041 67439117 -83344436 + FLAM_C SINE Alu 49 118 -194 2221 113 27 0 chr11 67439465 67439765 -83343788 - AluSx SINE Alu -4 308 1 1724 163 76 2 chr11 67439858 67440239 -83343314 + L1MB1 LINE L1 5497 5949 -219 1607 169 10 24 chr11 67440240 67440536 -83343017 + AluJo SINE Alu 1 292 -20 2316 88 3 7 chr11 67440637 67440934 -83342619 - AluY SINE Alu -15 296 1 410 197 26 0 chr11 67440953 67441029 -83342524 + MER2 DNA MER2_type 268 345 0 965 218 145 33 chr11 67441033 67441364 -83342189 + MLT1E LTR MaLR 203 570 -23 251 252 143 0 chr11 67441364 67441483 -83342070 - L1M4 LINE L1 -1318 4828 4693 1191 214 0 0 chr11 67441515 67441721 -83341832 + AluJo SINE Alu 6 211 -101 480 35 0 0 chr11 67441731 67441789 -83341764 + (GA)n Simple_repeat Simple_repeat 1 58 0 2196 218 36 64 chr11 67441801 67442049 -83341504 - L1M4 LINE L1 -1538 4608 4354 1522 139 155 4 chr11 67442049 67442300 -83341253 + AluSx SINE Alu 1 289 -23 2196 218 36 64 chr11 67442300 67442558 -83340995 - L1M4 LINE L1 -1792 4354 4090 396 0 0 0 chr11 67442558 67442602 -83340951 + (TG)n Simple_repeat Simple_repeat 2 45 0 2229 96 18 0 chr11 67442602 67442882 -83340671 - AluSx SINE Alu -27 285 1 1721 134 16 4 chr11 67442883 67443137 -83340416 - AluSx SINE Alu -21 291 35 2196 218 36 64 chr11 67443137 67443327 -83340226 - L1M4 LINE L1 -2054 4092 3928 270 219 0 0 chr11 67443363 67443427 -83340126 + (TATG)n Simple_repeat Simple_repeat 4 67 0 1922 132 0 66 chr11 67443431 67443749 -83339804 - AluJo SINE Alu -15 297 1 2462 71 14 0 chr11 67443837 67444132 -83339421 - AluY SINE Alu -12 299 1 268 193 36 72 chr11 67444132 67444215 -83339338 - L1M4 LINE L1 -1465 4681 4602 2485 45 7 0 chr11 67444223 67444509 -83339044 + AluY SINE Alu 7 294 -17 1251 174 5 0 chr11 67444929 67445125 -83338428 + AluJo SINE Alu 1 197 -115 611 154 218 0 chr11 67445150 67445260 -83338293 - AluJb SINE Alu -23 289 156 2215 106 10 0 chr11 67445303 67445596 -83337957 + AluSg SINE Alu 1 296 -14 1675 156 13 39 chr11 67445876 67446183 -83337370 - AluJb SINE Alu 0 312 14 215 306 16 0 chr11 67446464 67446526 -83337027 - L2 LINE L2 -29 3284 3222 269 109 22 0 chr11 67447015 67447061 -83336492 + A-rich Low_complexity Low_complexity 2 48 0 298 307 126 0 chr11 67447344 67447471 -83336082 - MIR SINE MIR -42 220 78 538 234 68 40 chr11 67447614 67447862 -83335691 + ORSL DNA AcHobo 1 255 -20 647 115 0 8 chr11 67448377 67448499 -83335054 + (GGA)n Simple_repeat Simple_repeat 2 122 0 256 239 0 14 chr11 67448526 67448597 -83334956 + GA-rich Low_complexity Low_complexity 2 71 0 393 164 0 0 chr11 67448624 67448697 -83334856 + GA-rich Low_complexity Low_complexity 2 74 0 2231 96 34 0 chr11 67448992 67449284 -83334269 + AluSp SINE Alu 1 302 -11 21 0 0 0 chr11 67449895 67449916 -83333637 + AT_rich Low_complexity Low_complexity 1 21 0 2301 73 38 0 chr11 67449916 67450203 -83333350 - AluSq SINE Alu -15 298 1 451 38 0 0 chr11 67450203 67450256 -83333297 - AluSg/x SINE Alu -175 134 82 1182 191 14 5 chr11 67450257 67450472 -83333081 - AluJo SINE Alu -95 217 1 2533 157 41 70 chr11 67450473 67450628 -83332925 - L1MB1 LINE L1 0 6168 6010 2203 124 0 3 chr11 67450628 67450927 -83332626 + AluSx SINE Alu 1 298 -14 2592 51 0 0 chr11 67450930 67451225 -83332328 + AluY SINE Alu 1 295 -16 2533 157 41 70 chr11 67451225 67451326 -83332227 - L1MB1 LINE L1 -160 6008 5906 1650 176 7 20 chr11 67451326 67451622 -83331931 - AluJo SINE Alu -20 292 1 2533 157 41 70 chr11 67451622 67452004 -83331549 - L1MB1 LINE L1 -262 5906 5497 2221 113 27 0 chr11 67452097 67452397 -83331156 + AluSx SINE Alu 1 308 -4 773 137 0 48 chr11 67452744 67452821 -83330732 - FLAM_C SINE Alu -193 119 49 2493 107 28 6 chr11 67452821 67453177 -83330376 + THE1B LTR MaLR 1 364 0 773 137 0 48 chr11 67453177 67453223 -83330330 - FLAM_C SINE Alu -263 49 2 2204 110 3 13 chr11 67453344 67453643 -83329910 - AluSx SINE Alu -16 296 1 1026 263 102 75 chr11 67453644 67454202 -83329351 - MLT1K LTR MaLR -6 582 10 2220 62 38 3 chr11 67454600 67454890 -83328663 + AluY SINE Alu 1 300 -11 372 152 0 0 chr11 67454934 67455000 -83328553 + (TG)n Simple_repeat Simple_repeat 2 67 0 296 330 118 33 chr11 67455001 67455331 -83328222 - L2 LINE L2 -591 2723 2366 626 274 139 86 chr11 67455373 67455848 -83327705 - MLT1L LTR MaLR -18 597 98 251 354 15 23 chr11 67455973 67456103 -83327450 + MLT1K LTR MaLR 35 163 -425 456 111 122 11 chr11 67456131 67456221 -83327332 - MER53 DNA DNA -89 100 1 484 296 0 0 chr11 67456249 67456374 -83327179 + MLT1K LTR MaLR 202 326 -262 1316 299 43 20 chr11 67456379 67456817 -83326736 + MLT1K LTR MaLR 136 583 -5 277 321 143 0 chr11 67456817 67456929 -83326624 - L2 LINE L2 -943 2371 2244 2025 116 7 0 chr11 67457078 67457371 -83326182 + AluSx SINE Alu 1 295 -17 486 293 36 64 chr11 67457397 67457605 -83325948 + L1MEd LINE L1 952 1164 -1326 2232 99 0 7 chr11 67457605 67457907 -83325646 + AluSx SINE Alu 1 300 -12 486 293 36 64 chr11 67457907 67457922 -83325631 + L1MEd LINE L1 1164 1178 -1312 1957 111 14 0 chr11 67457922 67458210 -83325343 + AluSq SINE Alu 1 292 -21 486 293 36 64 chr11 67458210 67458256 -83325297 + L1MEd LINE L1 1178 1303 -1187 2356 58 3 0 chr11 67458355 67458650 -83324903 - AluY SINE Alu -15 296 1 2148 114 0 0 chr11 67458721 67459020 -83324533 - AluSx SINE Alu -13 299 1 1313 226 3 10 chr11 67459360 67459657 -83323896 + AluJo SINE Alu 1 295 -17 854 83 0 0 chr11 67459659 67459819 -83323734 + AluSg/x SINE Alu 177 336 0 7452 136 22 58 chr11 67460056 67460265 -83323288 + L1MCa LINE L1 26 241 -6185 1855 132 0 0 chr11 67460265 67460537 -83323016 + AluSx SINE Alu 1 272 -40 294 29 0 0 chr11 67460539 67460574 -83322979 + (GGGGA)n Simple_repeat Simple_repeat 1 35 0 7452 136 22 58 chr11 67460574 67461791 -83321762 + L1MCa LINE L1 242 1403 -5023 1868 108 10 20 chr11 67461799 67462096 -83321457 + AluSx SINE Alu 1 294 -18 831 120 0 0 chr11 67462111 67462228 -83321325 + AluSq/x SINE Alu 25 141 -171 1726 118 15 7 chr11 67462228 67462500 -83321053 + AluSx SINE Alu 21 294 -18 2303 53 7 23 chr11 67462517 67462817 -83320736 + AluY SINE Alu 1 295 -16 1155 174 5 0 chr11 67463238 67463434 -83320119 + AluJo SINE Alu 1 197 -115 593 154 218 0 chr11 67463459 67463569 -83319984 - AluJb SINE Alu -23 289 156 2072 106 10 0 chr11 67463612 67463905 -83319648 + AluSg SINE Alu 1 296 -14 1526 156 13 39 chr11 67464185 67464492 -83319061 - AluJb SINE Alu 0 312 14 2216 97 7 0 chr11 67464555 67464864 -83318689 - AluSx SINE Alu -1 311 1 1983 101 0 0 chr11 67465141 67465408 -83318145 - AluSx SINE Alu -12 300 34 2288 86 0 3 chr11 67465423 67465727 -83317826 - AluSx SINE Alu -9 303 1 1650 174 35 0 chr11 67466053 67466340 -83317213 + AluSx SINE Alu 8 304 -8 23 78 0 0 chr11 67466696 67466747 -83316806 + AT_rich Low_complexity Low_complexity 1 51 0 282 246 14 14 chr11 67467702 67467771 -83315782 + L2 LINE L2 2182 2250 -1064 1737 112 0 8 chr11 67467971 67468230 -83315323 - AluY SINE Alu -14 297 41 1204 133 0 25 chr11 67468248 67468444 -83315109 - AluSx SINE Alu -121 191 1 2798 226 116 64 chr11 67468445 67469013 -83314540 - L1M4 LINE L1 -2300 3846 3309 1482 156 23 76 chr11 67469013 67469315 -83314238 + AluJo SINE Alu 12 297 -15 2798 226 116 64 chr11 67469315 67469526 -83314027 - L1M4 LINE L1 -2837 3309 3110 2279 101 0 0 chr11 67469526 67469834 -83313719 + AluSc SINE Alu 1 308 -1 2798 226 116 64 chr11 67469834 67470097 -83313456 - L1M4 LINE L1 -3036 3110 2862 1997 138 3 0 chr11 67470097 67470401 -83313152 + AluSx SINE Alu 1 305 -7 2798 226 116 64 chr11 67470401 67470652 -83312901 - L1M4 LINE L1 -3284 2862 2625 1391 122 28 125 chr11 67470652 67470972 -83312581 - AluJo SINE Alu -23 289 1 2798 226 116 64 chr11 67470972 67471198 -83312355 - L1M4 LINE L1 -3521 2625 2246 2186 106 0 0 chr11 67471210 67471513 -83312040 + AluSx SINE Alu 1 303 -9 790 190 57 25 chr11 67471515 67471673 -83311880 + AluJb SINE Alu 124 286 -26 1782 154 0 29 chr11 67471717 67472029 -83311524 + AluJb SINE Alu 1 303 -9 2027 72 7 31 chr11 67472131 67472423 -83311130 - AluY SINE Alu -26 285 1 1726 118 15 7 chr11 67472441 67472713 -83310840 - AluSx SINE Alu -18 294 21 821 121 9 0 chr11 67472713 67472829 -83310724 - AluSq/x SINE Alu -171 141 25 2204 96 0 3 chr11 67472844 67473137 -83310416 - AluSc SINE Alu -17 292 1 180 0 0 0 chr11 67473290 67473310 -83310243 + (A)n Simple_repeat Simple_repeat 1 20 0 550 213 92 18 chr11 67473321 67473485 -83310068 + L2 LINE L2 3138 3313 0 461 218 184 0 chr11 67474008 67474155 -83309398 + MIR SINE MIR 21 194 -68 332 237 151 11 chr11 67474345 67474438 -83309115 - L2 LINE L2 -29 3243 3138 196 262 66 0 chr11 67474550 67474611 -83308942 + MIR SINE MIR 89 153 -109 1151 149 12 66 chr11 67474769 67474810 -83308743 + AluJo SINE Alu 54 96 -215 1920 106 3 7 chr11 67474810 67475092 -83308461 + AluSq SINE Alu 1 281 -32 189 0 0 0 chr11 67475092 67475113 -83308440 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1151 149 12 66 chr11 67475113 67475341 -83308212 + AluJo SINE Alu 94 311 0 1805 141 10 10 chr11 67475358 67475649 -83307904 + AluSx SINE Alu 7 297 -15 2398 44 7 0 chr11 67475723 67476016 -83307537 + AluY SINE Alu 1 295 -16 1155 174 5 0 chr11 67476437 67476633 -83306920 + AluJo SINE Alu 1 197 -115 593 154 218 0 chr11 67476658 67476768 -83306785 - AluJb SINE Alu -23 289 156 2072 106 10 0 chr11 67476811 67477104 -83306449 + AluSg SINE Alu 1 296 -14 1512 156 13 39 chr11 67477384 67477691 -83305862 - AluJb SINE Alu 0 312 14 2103 97 6 35 chr11 67477754 67478073 -83305480 - AluSg SINE Alu 0 310 1 21 0 0 0 chr11 67479906 67479927 -83303626 + AT_rich Low_complexity Low_complexity 1 21 0 815 182 85 11 chr11 67480769 67480945 -83302608 - MER5A DNA MER1_type 0 189 1 526 300 79 16 chr11 67481594 67481784 -83301769 + MIR3 SINE MIR 4 205 -3 221 227 33 120 chr11 67482781 67482931 -83300622 - MIR3 SINE MIR -7 201 65 324 70 0 0 chr11 67483030 67483073 -83300480 + (TCC)n Simple_repeat Simple_repeat 2 44 0 485 287 24 12 chr11 67484566 67484733 -83298820 + MIR3 SINE MIR 18 186 -22 358 280 31 45 chr11 67485229 67485481 -83298072 - MLT1I LTR MaLR -123 286 72 1293 184 0 5 chr11 67535589 67535801 -83247752 - AluJb SINE Alu -101 211 1 930 164 0 0 chr11 67535856 67535996 -83247557 - AluJb SINE Alu -19 293 154 2054 113 0 0 chr11 67536715 67536981 -83246572 + AluSx SINE Alu 36 301 -11 1804 180 0 3 chr11 67537638 67537938 -83245615 - AluJb SINE Alu -13 299 1 199 293 27 60 chr11 67538547 67538697 -83244856 + L2 LINE L2 3164 3308 -5 1355 159 0 0 chr11 67538720 67538927 -83244626 + AluJo SINE Alu 1 207 -105 24 32 0 0 chr11 67538934 67538965 -83244588 + AT_rich Low_complexity Low_complexity 1 31 0 370 228 22 11 chr11 67540553 67540645 -83242908 - MIR SINE MIR -62 146 54 803 147 23 0 chr11 67540854 67540983 -83242570 - AluJb SINE Alu -180 132 1 259 269 93 123 chr11 67541138 67541602 -83241951 - L2 LINE L2 -15 3257 2808 198 208 0 0 chr11 67541705 67541753 -83241800 + (TG)n Simple_repeat Simple_repeat 1 48 0 246 62 0 0 chr11 67543493 67543525 -83240028 + (CCCCCA)n Simple_repeat Simple_repeat 4 35 0 2226 129 0 3 chr11 67544248 67544557 -83238996 - AluSx SINE Alu -4 308 1 1757 172 16 16 chr11 67545558 67545728 -83237825 - AluJb SINE Alu -9 303 131 2315 109 0 3 chr11 67545728 67546030 -83237523 - AluSg SINE Alu -9 301 1 1757 172 16 16 chr11 67546030 67546162 -83237391 - AluJb SINE Alu -180 132 1 2226 126 0 3 chr11 67547711 67548021 -83235532 - AluSx SINE Alu -3 309 1 1493 110 24 5 chr11 67548105 67548314 -83235239 + AluJb SINE Alu 79 291 -21 2602 52 3 13 chr11 67548970 67549279 -83234274 - AluY SINE Alu -5 306 1 2275 98 0 16 chr11 67549633 67549938 -83233615 + AluSx SINE Alu 1 300 -12 211 259 233 60 chr11 67551563 67551632 -83231921 - L2 LINE L2 0 3272 3216 2284 85 7 10 chr11 67551632 67551925 -83231628 + AluSq SINE Alu 1 292 -21 211 259 233 60 chr11 67551925 67551971 -83231582 - L2 LINE L2 -56 3216 3137 1924 162 0 32 chr11 67552274 67552582 -83230971 + AluJo SINE Alu 1 298 -14 36 23 0 0 chr11 67552799 67552842 -83230711 + AT_rich Low_complexity Low_complexity 1 43 0 2398 82 3 3 chr11 67552912 67553205 -83230348 + AluSp SINE Alu 1 293 -20 591 84 0 32 chr11 67553205 67553290 -83230263 - U6 snRNA snRNA -8 99 16 461 328 20 25 chr11 67554123 67554187 -83229366 - MIR SINE MIR 0 262 199 1926 152 0 23 chr11 67554187 67554497 -83229056 - AluJb SINE Alu -9 303 1 461 328 20 25 chr11 67554497 67554636 -83228917 - MIR SINE MIR -63 199 60 1742 149 35 3 chr11 67555530 67555819 -83227734 + AluJb SINE Alu 1 298 -14 1510 220 0 0 chr11 67555868 67556163 -83227390 + AluJb SINE Alu 2 296 -16 2044 126 3 0 chr11 67556163 67556457 -83227096 + AluSx SINE Alu 1 295 -17 2179 106 0 7 chr11 67556457 67556758 -83226795 + AluSg SINE Alu 1 299 -11 1535 179 15 0 chr11 67556760 67557033 -83226520 - AluJo SINE Alu -35 277 1 2034 119 3 3 chr11 67557042 67557335 -83226218 - AluSx SINE Alu -19 293 1 355 264 87 3 chr11 67557867 67558017 -83225536 + MIR SINE MIR 15 175 -57 218 281 171 0 chr11 67561398 67561480 -83222073 - MIR SINE MIR -50 212 117 201 175 0 53 chr11 67561653 67561710 -83221843 + T-rich Low_complexity Low_complexity 6 59 0 516 159 23 0 chr11 67561775 67561863 -83221690 - BC200 scRNA scRNA -109 91 2 234 344 0 0 chr11 67561903 67561967 -83221586 - MIR SINE MIR -184 78 15 1888 127 3 45 chr11 67563337 67563508 -83220045 - AluJo SINE Alu -11 301 147 1989 93 0 18 chr11 67563508 67563787 -83219766 - AluSq SINE Alu -1 312 39 1888 127 3 45 chr11 67563787 67563929 -83219624 - AluJo SINE Alu -165 147 1 1127 192 70 5 chr11 67563954 67564245 -83219308 - L1MB8 LINE L1 -315 5874 5566 1986 148 68 3 chr11 67564281 67564620 -83218933 + MER46B DNA MER2_type 1 236 0 392 280 51 19 chr11 67564739 67564896 -83218657 - L2 LINE L2 -1 3312 3151 389 174 29 0 chr11 67564906 67564975 -83218578 + tRNA-Gly-GGG tRNA tRNA 1 71 -3 2308 97 3 0 chr11 67565026 67565334 -83218219 + AluSp SINE Alu 1 309 -4 2350 97 0 0 chr11 67566270 67566581 -83216972 - AluSq SINE Alu -2 311 1 261 83 0 0 chr11 67569836 67569872 -83213681 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 1427 63 0 0 chr11 67572085 67572260 -83211293 - AluSp SINE Alu -4 309 135 357 62 0 0 chr11 67572297 67572345 -83211208 + (TG)n Simple_repeat Simple_repeat 2 49 0 300 284 9 78 chr11 67572988 67573104 -83210449 + MIR SINE MIR 18 125 -83 243 140 0 0 chr11 67576651 67576701 -83206852 + (T)n Simple_repeat Simple_repeat 1 50 0 264 30 0 0 chr11 67576747 67576780 -83206773 + (TG)n Simple_repeat Simple_repeat 2 34 0 204 114 0 29 chr11 67577090 67577125 -83206428 + (CACCC)n Simple_repeat Simple_repeat 4 37 0 282 125 54 0 chr11 67579405 67579461 -83204092 + Alu SINE Alu 238 296 -6 1825 112 8 11 chr11 67580132 67580400 -83203153 + AluSx SINE Alu 1 267 -45 257 249 76 64 chr11 67580458 67580707 -83202846 + L2 LINE L2 1796 2047 -1267 2484 160 159 11 chr11 67580853 67581163 -83202390 + Charlie1 DNA MER1_type 1777 2040 -721 1655 180 10 20 chr11 67581163 67581469 -83202084 + AluJo SINE Alu 1 303 -9 2484 160 159 11 chr11 67581469 67581988 -83201565 + Charlie1 DNA MER1_type 2040 2759 -2 228 35 0 0 chr11 67582235 67582264 -83201289 + (T)n Simple_repeat Simple_repeat 1 29 0 1824 153 3 13 chr11 67582275 67582641 -83200912 - AluSx SINE Alu 0 371 9 524 226 4 109 chr11 67582701 67582931 -83200622 - AluYa5 SINE Alu 0 311 106 2044 122 0 20 chr11 67583034 67583198 -83200355 - AluSx SINE Alu -15 297 131 1458 72 10 0 chr11 67583198 67583393 -83200160 - AluSq SINE Alu -16 297 101 2015 125 7 0 chr11 67583394 67583690 -83199863 - AluSg SINE Alu -12 298 1 2044 122 0 20 chr11 67583690 67583826 -83199727 - AluSx SINE Alu -180 132 1 501 258 14 113 chr11 67583866 67584087 -83199466 - MIR SINE MIR -43 219 21 607 86 0 0 chr11 67584551 67584632 -83198921 + AluY SINE Alu 2 82 -236 885 131 8 0 chr11 67585082 67585212 -83198341 - AluSq/x SINE Alu -182 131 1 311 242 33 28 chr11 67585240 67585348 -83198205 - MIR SINE MIR -67 141 42 832 156 7 22 chr11 67586886 67587021 -83196532 + FRAM SINE Alu 21 153 -23 2083 96 9 53 chr11 67587030 67587176 -83196377 + AluSc SINE Alu 1 152 -157 2377 58 0 35 chr11 67587176 67587487 -83196066 + AluY SINE Alu 1 300 -11 2083 96 9 53 chr11 67587487 67587662 -83195891 + AluSc SINE Alu 152 308 -1 1667 119 4 16 chr11 67588488 67588732 -83194821 - AluSq SINE Alu -72 241 1 1243 236 128 32 chr11 67588732 67589126 -83194427 + L2 LINE L2 2194 2640 -674 2239 106 0 10 chr11 67589126 67589437 -83194116 - AluSx SINE Alu -4 308 1 1243 236 128 32 chr11 67589437 67589503 -83194050 + L2 LINE L2 2640 2698 -616 589 253 64 103 chr11 67589510 67589629 -83193924 + L2 LINE L2 2952 3074 -239 2142 122 3 0 chr11 67589629 67589933 -83193620 - AluSp SINE Alu -8 305 1 392 0 21 0 chr11 67589935 67589983 -83193570 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 2190 65 4 4 chr11 67589983 67590261 -83193292 - AluY SINE Alu -28 283 6 1712 159 6 35 chr11 67590265 67590579 -83192974 - AluJb SINE Alu -7 305 1 589 253 64 103 chr11 67590579 67590646 -83192907 + L2 LINE L2 3077 3145 -168 2359 34 20 7 chr11 67590646 67590938 -83192615 - AluY SINE Alu -15 296 1 589 253 64 103 chr11 67590938 67591101 -83192452 + L2 LINE L2 3145 3297 -16 273 284 190 68 chr11 67591418 67591535 -83192018 - L2 LINE L2 -490 2824 2723 2324 71 0 7 chr11 67591535 67591832 -83191721 + AluSq SINE Alu 1 295 -18 552 286 0 0 chr11 67591839 67591972 -83191581 + FLAM_C SINE Alu 1 133 0 273 284 190 68 chr11 67591972 67592199 -83191354 - L2 LINE L2 -596 2718 2520 1799 136 4 7 chr11 67592199 67592478 -83191075 + AluSx SINE Alu 21 298 -14 2221 107 3 0 chr11 67592480 67592788 -83190765 + AluSp SINE Alu 1 309 -4 273 284 190 68 chr11 67592788 67592948 -83190605 - L2 LINE L2 -794 2520 2245 362 291 139 17 chr11 67593104 67593334 -83190219 - L2 LINE L2 -1340 1974 1717 2263 88 0 3 chr11 67593672 67593969 -83189584 - AluSq SINE Alu -17 296 1 300 209 9 87 chr11 67593972 67594087 -83189466 + MLT1L LTR MaLR 510 615 0 1634 134 76 4 chr11 67594233 67594536 -83189017 - AluSg1 SINE Alu 0 309 1 1776 125 9 61 chr11 67594571 67594899 -83188654 - AluSx SINE Alu -1 311 1 236 350 167 16 chr11 67594905 67595018 -83188535 + L2 LINE L2 2986 3081 -191 1852 165 7 0 chr11 67595018 67595327 -83188226 - AluJo SINE Alu -1 311 1 236 350 167 16 chr11 67595327 67595459 -83188094 + L2 LINE L2 3081 3268 -4 387 311 184 10 chr11 67595834 67596040 -83187513 - MIR SINE MIR -3 259 18 643 269 188 44 chr11 67596060 67596469 -83187084 - MLT1L LTR MaLR -4 611 144 378 82 98 0 chr11 67596538 67596599 -83186954 - MSTB2 LTR MaLR 0 457 391 2297 83 3 0 chr11 67596600 67596900 -83186653 + AluSg SINE Alu 2 302 -8 2099 121 0 10 chr11 67596904 67597202 -83186351 + AluSx SINE Alu 1 295 -17 1644 177 101 65 chr11 67597343 67597789 -83185764 - MLT1C LTR MaLR 0 467 6 240 250 0 0 chr11 67597928 67597980 -83185573 - L2 LINE L2 -4 3268 3217 2362 45 0 72 chr11 67598184 67598519 -83185034 - AluY SINE Alu 0 311 1 1632 118 30 82 chr11 67598559 67598888 -83184665 - AluSx SINE Alu 0 312 1 741 199 30 17 chr11 67598958 67599194 -83184359 + Charlie1 DNA MER1_type 2519 2757 -4 896 202 6 6 chr11 67599244 67599417 -83184136 - AluJb SINE Alu -5 307 135 1806 155 37 0 chr11 67599428 67599724 -83183829 - AluSx SINE Alu -5 307 1 364 184 143 61 chr11 67599732 67599775 -83183778 + Charlie1 DNA MER1_type 2598 2636 -125 2024 105 21 3 chr11 67599775 67600061 -83183492 - AluSg SINE Alu -19 291 1 364 184 143 61 chr11 67600061 67600164 -83183389 + Charlie1 DNA MER1_type 2636 2756 -5 1972 129 0 7 chr11 67600720 67601015 -83182538 - AluSg SINE Alu -4 306 14 1947 155 0 0 chr11 67601035 67601339 -83182214 - AluSg SINE Alu -6 304 1 2283 82 13 3 chr11 67601682 67601988 -83181565 + AluSc SINE Alu 1 309 0 2122 120 0 3 chr11 67601988 67602295 -83181258 + AluSg SINE Alu 1 307 -3 2106 100 0 7 chr11 67602564 67602863 -83180690 + AluSg1 SINE Alu 1 297 -12 1571 153 0 4 chr11 67603025 67603273 -83180280 + AluSx SINE Alu 51 297 -15 657 219 112 21 chr11 67603274 67603461 -83180092 + MIR SINE MIR 27 230 -32 1965 90 7 67 chr11 67603642 67603972 -83179581 - AluSq SINE Alu 0 312 1 609 205 31 0 chr11 67604329 67604456 -83179097 - FLAM_C SINE Alu 0 143 13 469 151 0 47 chr11 67604845 67604931 -83178622 + FLAM_A SINE Alu 41 122 -20 6340 175 63 31 chr11 67605487 67606622 -83176931 + Charlie1 DNA MER1_type 5 1204 -1557 2293 75 24 0 chr11 67606622 67606915 -83176638 + AluSq SINE Alu 1 300 -13 6340 175 63 31 chr11 67606915 67607341 -83176212 + Charlie1 DNA MER1_type 1204 1615 -1146 23 0 0 0 chr11 67607899 67607922 -83175631 + GC_rich Low_complexity Low_complexity 1 23 0 228 130 0 0 chr11 67609277 67609323 -83174230 + (TTTTA)n Simple_repeat Simple_repeat 5 50 0 28 0 0 0 chr11 67609883 67609911 -83173642 + AT_rich Low_complexity Low_complexity 1 28 0 180 77 0 0 chr11 67610898 67610924 -83172629 + (CCTCG)n Simple_repeat Simple_repeat 2 27 0 2329 89 3 13 chr11 67611801 67611812 -83171741 - AluSp SINE Alu 0 313 303 207 0 0 0 chr11 67611812 67611835 -83171718 + (TA)n Simple_repeat Simple_repeat 2 24 0 2329 89 3 13 chr11 67611835 67612139 -83171414 - AluSp SINE Alu -10 303 1 2081 117 3 0 chr11 67612141 67612431 -83171122 - AluSx SINE Alu -21 291 1 1744 178 0 13 chr11 67614220 67614518 -83169035 - AluJb SINE Alu -18 294 1 1759 83 8 8 chr11 67614846 67615086 -83168467 + AluSx SINE Alu 56 295 -17 24 0 0 0 chr11 67615087 67615111 -83168442 + AT_rich Low_complexity Low_complexity 1 24 0 183 238 50 50 chr11 67615279 67615359 -83168194 + L2 LINE L2 385 464 -2850 2105 100 31 0 chr11 67616210 67616501 -83167052 + AluSc SINE Alu 1 300 -9 251 54 27 0 chr11 67621494 67621531 -83162022 + (CGG)n Simple_repeat Simple_repeat 1 38 0 26 30 0 0 chr11 67621790 67621823 -83161730 + GC_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr11 67622012 67622051 -83161502 + GC_rich Low_complexity Low_complexity 1 39 0 294 257 206 7 chr11 67624597 67624733 -83158820 + L2 LINE L2 3151 3313 0 544 263 63 11 chr11 67626040 67626215 -83157338 + MIR SINE MIR 35 218 -44 1977 171 76 5 chr11 67626412 67626780 -83156773 + MSTD LTR MaLR 3 396 0 1280 161 0 0 chr11 67626887 67627086 -83156467 - AluSg/x SINE Alu -21 291 93 1261 114 20 10 chr11 67627186 67627387 -83156166 + AluJo SINE Alu 97 299 -13 194 250 39 0 chr11 67627487 67627539 -83156014 - MER5B DNA MER1_type -34 144 91 213 263 18 0 chr11 67628378 67628435 -83155118 + (CCG)n Simple_repeat Simple_repeat 1 58 0 270 339 73 9 chr11 67628873 67628982 -83154571 - MIR SINE MIR -77 131 16 2273 88 7 0 chr11 67629417 67629722 -83153831 - AluSq SINE Alu 0 313 7 562 311 38 14 chr11 67629759 67629971 -83153582 + MIR SINE MIR 18 234 -28 2152 131 0 3 chr11 67630920 67631233 -83152320 - AluSq SINE Alu -1 312 1 194 344 151 0 chr11 67631451 67631544 -83152009 - L2 LINE L2 -4 3309 3203 * 314 225 126 24 chr11 67631541 67631712 -83151841 + MIR SINE MIR 20 210 -52 447 227 0 136 chr11 67631776 67631930 -83151623 - MIR SINE MIR -109 153 21 312 327 87 0 chr11 67632882 67633032 -83150521 + MIR SINE MIR 1 163 -99 1008 96 0 22 chr11 67633055 67633191 -83150362 + FLAM_C SINE Alu 1 133 0 2178 117 0 0 chr11 67634002 67634310 -83149243 + AluSx SINE Alu 3 310 -2 1726 147 30 27 chr11 67635585 67635884 -83147669 - AluJb SINE Alu -12 300 1 309 223 144 65 chr11 67636491 67636531 -83147022 + MIR SINE MIR 107 142 -120 1657 174 16 29 chr11 67636531 67636847 -83146706 + AluJo SINE Alu 1 312 0 309 223 144 65 chr11 67636847 67636945 -83146608 + MIR SINE MIR 142 256 -6 507 171 178 0 chr11 67636946 67637083 -83146470 - L1PB4 LINE L1 0 6166 6011 235 350 102 0 chr11 67637223 67637360 -83146193 + MIR SINE MIR 3 153 -109 2521 47 0 0 chr11 67637377 67637677 -83145876 - AluY SINE Alu -11 300 1 2232 112 3 0 chr11 67637747 67638052 -83145501 - AluSx SINE Alu -6 306 1 2111 90 28 3 chr11 67638105 67638395 -83145158 - AluSg SINE Alu -13 297 1 2186 96 0 7 chr11 67638976 67639269 -83144284 - AluSq SINE Alu -12 301 11 301 294 21 56 chr11 67639459 67639602 -83143951 + L1MCa LINE L1 1369 1506 -4920 2189 110 13 0 chr11 67640677 67640978 -83142575 - AluSp SINE Alu -8 305 1 1761 167 0 33 chr11 67641258 67641563 -83141990 - AluJb SINE Alu -17 295 1 510 152 11 0 chr11 67641839 67641931 -83141622 - MER41B LTR ERV1 -542 93 1 1100 184 77 8 chr11 67641973 67642207 -83141346 - AluJb SINE Alu -14 298 49 2218 68 23 16 chr11 67642244 67642552 -83141001 + AluY SINE Alu 1 310 -1 1158 105 0 0 chr11 67642552 67642714 -83140839 + AluSg/x SINE Alu 132 293 -17 818 153 0 0 chr11 67642715 67642852 -83140701 + LTR23 LTR ERV1 298 434 -3 270 267 101 62 chr11 67642852 67642944 -83140609 + MER34 LTR ERV1 156 243 -299 2083 107 10 3 chr11 67642944 67643233 -83140320 - AluSc SINE Alu -6 303 13 270 267 101 62 chr11 67643233 67643434 -83140119 + MER34 LTR ERV1 243 433 -109 3413 75 18 5 chr11 67643434 67643872 -83139681 - MLT2A1 LTR ERVL 0 444 1 270 267 101 62 chr11 67643872 67643987 -83139566 + MER34 LTR ERV1 433 542 0 2160 92 0 3 chr11 67644246 67644538 -83139015 + AluSx SINE Alu 1 291 -21 949 37 0 0 chr11 67644538 67644645 -83138908 + U6 snRNA snRNA 1 107 0 566 251 126 0 chr11 67644645 67644812 -83138741 + MLT1D LTR MaLR 272 459 -46 483 303 43 69 chr11 67645132 67645278 -83138275 + MIR SINE MIR 2 141 -121 1840 152 17 3 chr11 67645278 67645568 -83137985 + AluJb SINE Alu 1 294 -18 483 303 43 69 chr11 67645568 67645652 -83137901 + MIR SINE MIR 141 226 -36 216 229 115 0 chr11 67645738 67645799 -83137754 - L2 LINE L2 -65 3207 3140 311 340 108 0 chr11 67645891 67646094 -83137459 + L2 LINE L2 3084 3308 -5 1979 113 32 0 chr11 67646197 67646479 -83137074 + AluSx SINE Alu 2 292 -20 1404 182 3 51 chr11 67646497 67646638 -83136915 + AluJo SINE Alu 1 147 -165 2245 109 0 0 chr11 67646638 67646942 -83136611 + AluSx SINE Alu 1 304 -8 1404 182 3 51 chr11 67646942 67647113 -83136440 + AluJo SINE Alu 147 298 -14 215 218 18 18 chr11 67647304 67647359 -83136194 + GA-rich Low_complexity Low_complexity 4 58 0 1634 110 0 0 chr11 67647497 67647724 -83135829 - AluSg/x SINE Alu -10 302 76 2253 97 3 0 chr11 67647724 67648031 -83135522 - AluSq SINE Alu -4 309 1 425 103 0 0 chr11 67648031 67648089 -83135464 - AluSq/x SINE Alu -178 135 78 1265 179 0 0 chr11 67648089 67648301 -83135252 - AluSx SINE Alu -100 212 1 289 100 0 20 chr11 67648326 67648376 -83135177 - Alu SINE Alu -253 49 1 2342 50 0 0 chr11 67649224 67649539 -83134014 - AluSc SINE Alu 0 315 1 2304 70 0 19 chr11 67649630 67649942 -83133611 - AluSg SINE Alu -4 306 1 384 71 0 0 chr11 67650854 67650910 -83132643 + (TG)n Simple_repeat Simple_repeat 2 57 0 2041 86 43 23 chr11 67651048 67651349 -83132204 - AluSx SINE Alu -4 308 2 1933 128 14 3 chr11 67651358 67651647 -83131906 - AluSg SINE Alu -13 297 6 1323 133 76 126 chr11 67651657 67651823 -83131730 - AluJb SINE Alu -11 301 157 2127 86 23 26 chr11 67651823 67652127 -83131426 - AluSg SINE Alu -7 303 1 1323 133 76 126 chr11 67652127 67652277 -83131276 - AluJb SINE Alu -155 157 1 1518 93 0 9 chr11 67652283 67652497 -83131056 - AluSc SINE Alu -13 296 85 2206 103 10 3 chr11 67655150 67655450 -83128103 + AluSx SINE Alu 1 302 -10 198 0 0 0 chr11 67655649 67655671 -83127882 + (TA)n Simple_repeat Simple_repeat 2 23 0 1803 143 3 30 chr11 67657294 67657595 -83125958 + AluJo SINE Alu 7 299 -13 1380 141 133 31 chr11 67657606 67657731 -83125822 + AluSx SINE Alu 12 123 -189 2197 85 7 0 chr11 67657731 67658014 -83125539 + AluSc SINE Alu 1 285 -24 1702 103 129 4 chr11 67658017 67658280 -83125273 + AluSc SINE Alu 1 296 -3 1380 141 133 31 chr11 67658280 67658406 -83125147 + AluSx SINE Alu 124 293 -19 256 172 47 16 chr11 67658408 67658472 -83125081 - MIR SINE MIR -149 113 48 1976 139 23 0 chr11 67658868 67659170 -83124383 - AluJb SINE Alu -3 309 1 274 318 11 0 chr11 67660508 67660596 -83122957 - MIR SINE MIR -57 151 63 821 164 8 0 chr11 67661918 67662052 -83121501 + AluSq/x SINE Alu 1 135 -177 403 290 104 56 chr11 67662112 67662139 -83121414 - L1ME4a LINE L1 -3 6118 6094 1667 141 4 0 chr11 67662139 67662388 -83121165 + AluSx SINE Alu 46 295 -17 403 290 104 56 chr11 67662388 67662581 -83120972 - L1ME4a LINE L1 -27 6094 5884 2101 136 0 0 chr11 67662581 67662933 -83120620 - AluSx SINE Alu 0 312 1 2053 124 3 0 chr11 67662945 67663236 -83120317 - AluSg SINE Alu -18 292 1 2015 127 3 3 chr11 67663241 67663533 -83120020 - AluJo SINE Alu -20 292 1 858 268 131 23 chr11 67663547 67663929 -83119624 - L1ME3A LINE L1 0 6170 5747 740 164 52 0 chr11 67664224 67664358 -83119195 + MER34C LTR ERV1 1 141 -444 1970 144 0 7 chr11 67664380 67664678 -83118875 - AluSq SINE Alu -17 296 1 520 27 13 13 chr11 67664726 67664801 -83118752 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 1739 122 98 0 chr11 67664801 67665056 -83118497 - AluSg SINE Alu -30 280 1 1006 144 144 0 chr11 67665056 67665280 -83118273 + LTR56 LTR ERV1 27 283 -162 706 141 0 0 chr11 67665280 67665401 -83118152 - MER41B LTR ERV1 0 635 515 2154 98 0 0 chr11 67665401 67665678 -83117875 + AluSg SINE Alu 1 277 -33 2129 106 13 0 chr11 67665692 67665993 -83117560 + AluSx SINE Alu 1 305 -7 2169 117 0 10 chr11 67665997 67666304 -83117249 + AluSx SINE Alu 1 304 -8 193 276 17 0 chr11 67666867 67666925 -83116628 - L2 LINE L2 -57 3256 3198 283 268 70 0 chr11 67667522 67667593 -83115960 + MIR SINE MIR 46 121 -87 2261 95 0 0 chr11 67667597 67667893 -83115660 - AluSx SINE Alu -16 296 1 806 148 7 28 chr11 67667936 67668078 -83115475 - L1MB7 LINE L1 -19 6165 6027 274 311 123 8 chr11 67668078 67668200 -83115353 + MIR SINE MIR 122 257 -5 1957 125 0 16 chr11 67668601 67668905 -83114648 - AluSg SINE Alu -11 299 1 820 163 0 34 chr11 67668908 67669055 -83114498 - AluJo SINE Alu -170 142 1 2380 64 0 3 chr11 67669061 67669357 -83114196 - AluSc SINE Alu -14 295 1 2221 100 13 3 chr11 67670687 67670988 -83112565 - AluSp SINE Alu -9 304 1 2222 118 0 3 chr11 67670988 67671301 -83112252 - AluSx SINE Alu 0 312 1 2442 84 0 0 chr11 67671319 67671630 -83111923 - AluY SINE Alu 0 311 1 395 250 107 9 chr11 67672201 67672313 -83111240 + MIR SINE MIR 24 146 -62 1576 227 42 71 chr11 67672317 67672755 -83110798 + MLT1D LTR MaLR 1 423 -82 2266 95 0 0 chr11 67672755 67673049 -83110504 + AluY SINE Alu 1 294 -17 1576 227 42 71 chr11 67673049 67673130 -83110423 + MLT1D LTR MaLR 423 505 0 2173 96 20 0 chr11 67674112 67674414 -83109139 - AluSq SINE Alu -5 308 1 2268 86 0 7 chr11 67674419 67674723 -83108830 - AluSx SINE Alu -10 302 1 2050 117 13 10 chr11 67674817 67675126 -83108427 - AluSx SINE Alu -2 310 1 1786 97 20 0 chr11 67675179 67675426 -83108127 + AluSp SINE Alu 1 252 -61 844 138 69 75 chr11 67675427 67675601 -83107952 - AluJo SINE Alu -139 173 1 2290 78 0 3 chr11 67675628 67675924 -83107629 + AluY SINE Alu 1 295 -16 613 222 117 38 chr11 67675926 67675977 -83107576 - L1MD1 LINE L1 -8 6234 6188 2683 26 0 0 chr11 67675977 67676284 -83107269 + AluY SINE Alu 1 307 -4 613 222 117 38 chr11 67676284 67676498 -83107055 - L1MD1 LINE L1 -54 6188 5948 552 194 9 0 chr11 67676528 67676636 -83106917 + FLAM_A SINE Alu 8 116 -26 302 272 52 92 chr11 67678116 67678289 -83105264 - MIR3 SINE MIR -7 201 36 386 290 76 14 chr11 67678445 67678590 -83104963 + MIR SINE MIR 9 162 -100 411 193 9 70 chr11 67678754 67678868 -83104685 - MIR3 SINE MIR -19 189 83 1429 119 0 0 chr11 67678873 67679074 -83104479 + AluSx SINE Alu 11 211 -101 711 146 0 0 chr11 67679799 67679902 -83103651 + AluSp/q SINE Alu 198 300 -13 2124 102 20 0 chr11 67679908 67680203 -83103350 + AluSq SINE Alu 1 301 -12 382 253 41 68 chr11 67680207 67680315 -83103238 + MIR SINE MIR 51 160 -102 2223 100 3 0 chr11 67680315 67680614 -83102939 + AluSx SINE Alu 1 300 -12 2202 42 49 7 chr11 67680614 67680899 -83102654 + AluY SINE Alu 1 297 -14 382 253 41 68 chr11 67680899 67680935 -83102618 + MIR SINE MIR 158 192 -70 1529 159 68 0 chr11 67681189 67681495 -83102058 + AluJo SINE Alu 1 324 0 378 287 120 16 chr11 67681616 67681874 -83101679 - MER102b DNA MER1_type -29 312 28 458 277 75 8 chr11 67681934 67682122 -83101431 + MIR SINE MIR 5 199 -63 923 294 116 12 chr11 67682605 67682805 -83100748 - L2 LINE L2 -4 3309 3131 2110 102 14 3 chr11 67682805 67683098 -83100455 + AluSx SINE Alu 1 296 -16 923 294 116 12 chr11 67683098 67683302 -83100251 - L2 LINE L2 -182 3131 2863 2021 128 0 33 chr11 67683453 67683759 -83099794 - AluSx SINE Alu -16 296 1 1008 118 0 0 chr11 67683759 67683894 -83099659 - AluSq/x SINE Alu -178 135 1 317 251 287 34 chr11 67683911 67684288 -83099265 - L2 LINE L2 -630 2684 2192 2296 83 7 7 chr11 67684288 67684588 -83098965 + AluSx SINE Alu 1 300 -12 317 251 287 34 chr11 67684588 67684624 -83098929 - L2 LINE L2 -1122 2192 2166 650 179 107 0 chr11 67684631 67684743 -83098810 - FLAM_C SINE Alu -19 124 1 1754 151 4 0 chr11 67684784 67685056 -83098497 + AluJb SINE Alu 32 304 -8 2219 104 0 3 chr11 67685160 67685459 -83098094 - AluSc SINE Alu -11 298 1 712 308 156 15 chr11 67685542 67685945 -83097608 - L2 LINE L2 -1235 2079 1585 1670 159 7 33 chr11 67685945 67686114 -83097439 - AluJo SINE Alu -18 294 135 2118 107 7 0 chr11 67686114 67686404 -83097149 - AluSp SINE Alu -21 292 1 1670 159 7 33 chr11 67686404 67686536 -83097017 - AluJo SINE Alu -177 135 1 712 308 156 15 chr11 67686536 67686651 -83096902 - L2 LINE L2 -1729 1585 1488 1208 65 0 7 chr11 67686773 67686926 -83096627 + AluSq SINE Alu 142 293 -20 21 57 0 0 chr11 67689822 67689857 -83093696 + GC_rich Low_complexity Low_complexity 1 35 0 197 107 0 0 chr11 67691775 67691803 -83091750 - MIR SINE MIR -118 144 117 190 200 67 0 chr11 67692341 67692386 -83091167 - MIR SINE MIR -98 164 117 753 251 30 39 chr11 67692754 67692957 -83090596 + MIR SINE MIR 28 228 -34 1928 111 0 4 chr11 67694158 67694420 -83089133 - AluSx SINE Alu -38 274 14 298 184 145 0 chr11 67694552 67694628 -83088925 - MIR SINE MIR -104 158 72 265 216 14 54 chr11 67695582 67695656 -83087897 + MIR SINE MIR 54 124 -84 929 143 0 0 chr11 67695682 67695815 -83087738 + FLAM_C SINE Alu 1 133 0 257 263 62 0 chr11 67695856 67695936 -83087617 - MIR SINE MIR -74 134 50 2124 93 4 0 chr11 67695937 67696242 -83087311 - AluSg SINE Alu 0 306 1 252 229 24 48 chr11 67696251 67696334 -83087219 - MIR SINE MIR -61 147 73 196 118 29 0 chr11 67696584 67696618 -83086935 - MIR SINE MIR -115 147 113 183 293 78 9 chr11 67697244 67697360 -83086193 - L2 LINE L2 -3 3269 3146 321 289 47 23 chr11 67697707 67697835 -83085718 + MIR SINE MIR 111 241 -21 239 253 39 84 chr11 67698286 67698440 -83085113 - L2 LINE L2 -227 3045 2899 375 257 7 44 chr11 67699078 67699214 -83084339 + GA-rich Low_complexity Low_complexity 3 133 0 258 337 10 0 chr11 67700325 67700423 -83083130 + L2 LINE L2 2950 3048 -224 430 284 0 0 chr11 67700915 67701091 -83082462 + (TTGG)n Simple_repeat Simple_repeat 1 176 0 352 311 0 0 chr11 67701107 67701287 -83082266 + (TTGG)n Simple_repeat Simple_repeat 1 180 0 221 335 0 11 chr11 67701260 67701442 -83082111 + (TTGGGG)n Simple_repeat Simple_repeat 1 180 0 * 419 274 0 11 chr11 67701351 67701526 -83082027 + (TTGG)n Simple_repeat Simple_repeat 4 176 0 302 282 0 0 chr11 67701553 67701670 -83081883 + (TTGG)n Simple_repeat Simple_repeat 4 120 0 31 82 0 0 chr11 67701776 67701849 -83081704 + GC_rich Low_complexity Low_complexity 1 73 0 282 216 0 0 chr11 67702054 67702128 -83081425 + (TTCA)n Simple_repeat Simple_repeat 1 74 0 508 316 28 28 chr11 67702271 67702489 -83081064 + MIR SINE MIR 35 252 -10 321 303 42 17 chr11 67703120 67703239 -83080314 - L1ME4a LINE L1 -61 6060 5939 191 356 83 37 chr11 67703258 67703474 -83080079 + L2 LINE L2 3043 3268 -4 1213 224 83 7 chr11 67703532 67703646 -83079907 + AluJo SINE Alu 2 106 -196 2124 120 0 0 chr11 67703646 67703938 -83079615 - AluSq SINE Alu -20 293 2 1213 224 83 7 chr11 67703938 67704100 -83079453 + AluJo SINE Alu 106 299 -3 303 339 141 37 chr11 67704205 67704580 -83078973 - L2 LINE L2 -24 3248 2835 299 383 75 0 chr11 67705048 67705249 -83078304 + MIR SINE MIR 31 246 -16 2207 93 3 3 chr11 67705720 67706020 -83077533 + AluSx SINE Alu 1 300 -12 219 36 0 0 chr11 67706020 67706048 -83077505 + (CAGG)n Simple_repeat Simple_repeat 2 29 0 882 137 15 0 chr11 67706596 67706727 -83076826 - FLAM_A SINE Alu 0 133 1 285 247 38 101 chr11 67706972 67707130 -83076423 + L2 LINE L2 3165 3312 -1 256 299 11 11 chr11 67708989 67709076 -83074477 + CT-rich Low_complexity Low_complexity 3 89 0 786 260 150 21 chr11 67710377 67710920 -83072633 - L2 LINE L2 -5 3308 2687 443 329 48 12 chr11 67710921 67711170 -83072383 + L1ME LINE L1 5559 5816 -346 1911 129 7 30 chr11 67711175 67711298 -83072255 + AluJb SINE Alu 1 125 -187 2147 113 3 3 chr11 67711298 67711599 -83071954 - AluSg SINE Alu -9 301 1 1911 129 7 30 chr11 67711599 67711778 -83071775 + AluJb SINE Alu 125 296 -16 1743 136 71 17 chr11 67712242 67712537 -83071016 + AluSx SINE Alu 1 311 -1 220 270 81 0 chr11 67712551 67712625 -83070928 - MIR SINE MIR -63 145 66 676 309 27 14 chr11 67713011 67713234 -83070319 + MIR SINE MIR 35 260 -2 341 268 71 91 chr11 67714052 67714250 -83069303 - MIR SINE MIR -54 208 15 * 396 175 0 72 chr11 67714236 67714333 -83069220 + MIR3 SINE MIR 85 174 -34 2074 106 51 0 chr11 67714340 67714633 -83068920 + AluSx SINE Alu 1 308 -4 210 200 15 31 chr11 67715506 67715571 -83067982 + C-rich Low_complexity Low_complexity 2 65 0 254 313 12 0 chr11 67716361 67716441 -83067112 - L2 LINE L2 -6 3266 3186 1885 132 17 3 chr11 67716481 67716770 -83066783 + AluSx SINE Alu 1 293 -19 273 309 82 0 chr11 67717173 67717270 -83066283 + MIR SINE MIR 109 213 -49 1085 174 50 4 chr11 67717277 67717519 -83066034 + ORSL DNA AcHobo 23 275 0 355 323 44 50 chr11 67717583 67717880 -83065673 + L2 LINE L2 2963 3257 -15 204 137 96 96 chr11 67718725 67718798 -83064755 + MIR3 SINE MIR 110 182 -26 350 322 164 0 chr11 67720024 67720201 -83063352 + MIR SINE MIR 29 234 -28 2114 92 0 3 chr11 67720229 67720539 -83063014 + AluSx SINE Alu 3 311 0 249 293 81 0 chr11 67722513 67722612 -83060941 + MIR SINE MIR 57 163 -99 606 319 80 42 chr11 67723360 67723761 -83059792 - L2 LINE L2 -18 3254 2839 935 246 87 30 chr11 67723858 67724356 -83059197 + L2 LINE L2 2712 3222 -91 180 132 0 53 chr11 67724347 67724385 -83059168 + MIR SINE MIR 223 258 -4 * 1650 154 29 7 chr11 67724389 67724661 -83058892 + AluJb SINE Alu 21 298 -14 1123 73 0 0 chr11 67724663 67724799 -83058754 + AluSq/x SINE Alu 1 136 -176 2100 129 0 0 chr11 67724800 67725094 -83058459 + AluSg SINE Alu 1 294 -16 350 305 6 0 chr11 67726138 67726302 -83057251 + (CCAA)n Simple_repeat Simple_repeat 4 168 0 261 0 0 0 chr11 67726436 67726465 -83057088 + (A)n Simple_repeat Simple_repeat 1 29 0 492 321 16 27 chr11 67728235 67728419 -83055134 + MIR SINE MIR 9 190 -72 419 284 83 18 chr11 67728881 67729050 -83054503 - MIR SINE MIR -15 247 68 1833 101 0 25 chr11 67729050 67729336 -83054217 - AluSq SINE Alu -13 300 22 222 264 55 22 chr11 67729843 67729934 -83053619 - MIR SINE MIR -73 135 42 2045 97 0 4 chr11 67730241 67730519 -83053034 - AluSq SINE Alu -36 277 1 232 190 0 127 chr11 67730747 67730826 -83052727 + MIR3 SINE MIR 95 163 -45 560 174 9 43 chr11 67731952 67732067 -83051486 - FLAM_A SINE Alu -19 123 13 269 274 12 0 chr11 67732145 67732229 -83051324 - MER117 DNA MER1_type -16 181 97 318 333 29 1 chr11 67732276 67732393 -83051160 - MIR SINE MIR -67 141 22 210 37 0 0 chr11 67733003 67733030 -83050523 + (C)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr11 67733099 67733122 -83050431 + GC_rich Low_complexity Low_complexity 1 23 0 27 121 0 0 chr11 67733164 67733338 -83050215 + GC_rich Low_complexity Low_complexity 1 174 0 27 0 0 0 chr11 67733555 67733582 -83049971 + GC_rich Low_complexity Low_complexity 1 27 0 26 50 0 0 chr11 67733708 67733748 -83049805 + GC_rich Low_complexity Low_complexity 1 40 0 257 233 55 14 chr11 67735160 67735233 -83048320 + MIR SINE MIR 99 174 -88 234 224 20 0 chr11 67736204 67736253 -83047300 + MIR SINE MIR 115 164 -98 234 0 0 0 chr11 67737357 67737383 -83046170 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 332 295 25 8 chr11 67737386 67737508 -83046045 - L2 LINE L2 -15 3257 3134 234 0 0 0 chr11 67738532 67738558 -83044995 + (A)n Simple_repeat Simple_repeat 1 26 0 479 326 16 27 chr11 67740326 67740510 -83043043 + MIR SINE MIR 9 190 -72 419 284 83 18 chr11 67740972 67741141 -83042412 - MIR SINE MIR -15 247 68 2095 105 0 13 chr11 67741141 67741445 -83042108 - AluSq SINE Alu -13 300 1 555 237 107 17 chr11 67741517 67741581 -83041972 - MIR SINE MIR 0 262 205 1801 134 46 0 chr11 67741581 67741865 -83041688 - AluJo SINE Alu -12 300 4 555 237 107 17 chr11 67741865 67741977 -83041576 - MIR SINE MIR -57 205 70 231 159 32 79 chr11 67742007 67742070 -83041483 - MIR SINE MIR -123 139 80 187 256 0 0 chr11 67742284 67742327 -83041226 - L2 LINE L2 -213 3059 3017 867 129 0 0 chr11 67743138 67743262 -83040291 + FLAM_C SINE Alu 5 128 -5 571 247 126 24 chr11 67743279 67743494 -83040059 - MIR SINE MIR -10 252 18 306 179 0 0 chr11 67743873 67743929 -83039624 - AluSg/q SINE Alu -4 299 244 1041 145 78 0 chr11 67743939 67744105 -83039448 - AluSg SINE Alu -131 179 1 233 286 30 0 chr11 67744329 67744442 -83039111 + L2 LINE L2 2882 2996 -276 349 279 39 19 chr11 67744601 67744748 -83038805 - MIR SINE MIR -63 145 28 281 213 107 0 chr11 67744839 67744914 -83038639 - MIR SINE MIR -72 190 108 2351 103 0 0 chr11 67744921 67745231 -83038322 + AluSq SINE Alu 1 310 -3 465 321 41 20 chr11 67745937 67746133 -83037420 - MIR SINE MIR -48 214 15 253 296 23 12 chr11 67746219 67746318 -83037235 - MIR SINE MIR -63 145 95 272 240 31 62 chr11 67746511 67746607 -83036946 - MIR3 SINE MIR -28 180 88 316 244 73 0 chr11 67746711 67746793 -83036760 - MIR SINE MIR -19 243 156 194 225 42 28 chr11 67747551 67747622 -83035931 - MIR SINE MIR -73 135 64 2080 98 0 0 chr11 67747949 67748226 -83035327 - AluSq SINE Alu -36 277 1 232 190 0 127 chr11 67748454 67748533 -83035020 + MIR3 SINE MIR 95 163 -45 560 174 9 43 chr11 67749659 67749774 -83033779 - FLAM_A SINE Alu -19 123 13 269 274 12 0 chr11 67749852 67749936 -83033617 - MER117 DNA MER1_type -16 181 97 318 333 29 1 chr11 67749983 67750100 -83033453 - MIR SINE MIR -67 141 22 307 309 12 0 chr11 67751555 67751636 -83031917 + L3b LINE CR1 1321 1402 -181 248 143 127 32 chr11 67751898 67751961 -83031592 + MIR3 SINE MIR 94 162 -46 315 71 0 0 chr11 67752983 67753025 -83030528 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 188 250 0 89 chr11 67755144 67755200 -83028353 - MIR SINE MIR -116 146 96 265 297 117 39 chr11 67756956 67757084 -83026469 - MIR3 SINE MIR -52 156 19 267 56 0 0 chr11 67757613 67757649 -83025904 + MIR SINE MIR 113 148 -60 240 35 0 0 chr11 67757985 67758014 -83025539 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 36 53 0 0 chr11 67758238 67758295 -83025258 + GC_rich Low_complexity Low_complexity 1 57 0 205 278 70 26 chr11 67758818 67758933 -83024620 - MER5A DNA MER1_type -22 167 48 1409 111 8 66 chr11 67759005 67759249 -83024304 - AluJo SINE Alu -14 298 69 318 253 0 58 chr11 67759524 67759611 -83023942 + L2 LINE L2 3230 3311 -2 279 217 33 0 chr11 67759870 67759930 -83023623 - L2 LINE L2 -18 3295 3234 552 311 73 5 chr11 67760438 67760644 -83022909 + MIR SINE MIR 11 230 -32 261 0 0 0 chr11 67762146 67762175 -83021378 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 298 300 52 88 chr11 67762195 67762595 -83020958 - L2 LINE L2 -29 3243 2858 284 271 105 68 chr11 67762722 67762806 -83020747 - L2 LINE L2 -12 3260 3181 2417 63 0 3 chr11 67762806 67763109 -83020444 + AluY SINE Alu 1 302 -9 284 271 105 68 chr11 67763109 67763290 -83020263 - L2 LINE L2 -91 3181 2985 2236 98 7 3 chr11 67763310 67763615 -83019938 + AluSx SINE Alu 1 306 -6 1684 130 0 75 chr11 67763634 67763956 -83019597 + AluJo SINE Alu 11 308 -4 444 249 173 5 chr11 67764033 67764218 -83019335 - MIR SINE MIR -25 237 22 510 283 40 40 chr11 67767330 67767507 -83016046 - MIR SINE MIR -36 226 50 227 191 21 0 chr11 67768644 67768691 -83014862 + L2 LINE L2 3266 3313 0 194 290 63 0 chr11 67768910 67768988 -83014565 + MIR SINE MIR 100 182 -63 26 0 0 0 chr11 67769713 67769739 -83013814 + AT_rich Low_complexity Low_complexity 1 26 0 181 341 110 0 chr11 67769843 67769925 -83013628 + MIR SINE MIR 62 152 -110 211 196 39 0 chr11 67769977 67770028 -83013525 + MIR SINE MIR 164 216 -46 245 325 63 24 chr11 67771411 67771537 -83012016 - MIR3 SINE MIR -7 201 71 323 256 91 25 chr11 67771726 67771847 -83011706 - MIR SINE MIR -70 192 64 513 244 113 42 chr11 67772651 67772819 -83010734 - MIR SINE MIR -36 226 47 2114 108 3 7 chr11 67772972 67773267 -83010286 - AluSq SINE Alu -19 294 1 216 283 0 0 chr11 67773676 67773722 -83009831 + L2 LINE L2 3244 3289 -24 396 103 0 0 chr11 67773728 67773786 -83009767 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 540 211 24 8 chr11 67773863 67773986 -83009567 - MIR SINE MIR -68 194 70 1607 133 47 0 chr11 67775995 67776229 -83007324 - AluSx SINE Alu -67 245 1 215 315 0 65 chr11 67776514 67776622 -83006931 - L2 LINE L2 -247 3025 2925 778 156 16 0 chr11 67777127 67777249 -83006304 - AluJb SINE Alu -69 243 120 4934 46 0 3 chr11 67777304 67777887 -83005666 - SVA Other Other 0 1386 806 2181 88 7 0 chr11 67778016 67778300 -83005253 - AluSg SINE Alu -24 286 1 1032 85 0 0 chr11 67778316 67778446 -83005107 - AluSg SINE Alu -180 130 1 1626 152 40 24 chr11 67778698 67778995 -83004558 + AluJo SINE Alu 1 302 -10 2176 112 10 0 chr11 67779012 67779316 -83004237 - AluSx SINE Alu -5 307 1 437 83 56 0 chr11 67779323 67779395 -83004158 - Alu SINE Alu -9 301 226 291 173 0 0 chr11 67779531 67779583 -83003970 + MLT1B LTR MaLR 339 390 0 2085 246 87 54 chr11 67779737 67780064 -83003489 - MER21B LTR ERV1 -8 855 540 777 145 207 0 chr11 67780064 67780209 -83003344 - FAM SINE Alu 0 175 1 2085 246 87 54 chr11 67780209 67780380 -83003173 - MER21B LTR ERV1 -323 540 376 2173 112 0 13 chr11 67780380 67780683 -83002870 - AluSx SINE Alu -13 299 1 2085 246 87 54 chr11 67780683 67781011 -83002542 - MER21B LTR ERV1 -487 376 1 268 278 112 27 chr11 67781015 67781202 -83002351 - L1MC/D LINE L1 -1921 5887 5685 205 346 62 0 chr11 67781538 67781619 -83001934 - L2 LINE L2 0 3313 3228 1430 234 91 31 chr11 67781806 67782324 -83001229 - MLT1H1 LTR MaLR 0 555 7 660 203 96 10 chr11 67782471 67782668 -83000885 - MER20 DNA MER1_type -5 214 1 2221 119 0 0 chr11 67782672 67782984 -83000569 + AluSx SINE Alu 1 312 0 1111 292 83 3 chr11 67783352 67783725 -82999828 - L2 LINE L2 -793 2521 2119 471 234 124 7 chr11 67784393 67784538 -82999015 + MER69A DNA AcHobo 1 162 -15 260 312 11 43 chr11 67784557 67784650 -82998903 - MIR SINE MIR -65 197 108 1797 127 10 45 chr11 67784683 67784975 -82998578 + AluSx SINE Alu 1 282 -30 2197 95 0 3 chr11 67785004 67785298 -82998255 + AluSg1 SINE Alu 1 293 -16 1686 136 0 0 chr11 67785543 67785785 -82997768 - AluSx SINE Alu -13 299 58 576 190 29 15 chr11 67785805 67785942 -82997611 - MIR SINE MIR -45 217 79 244 320 40 60 chr11 67785946 67786046 -82997507 + L2 LINE L2 3170 3267 -46 737 227 303 6 chr11 67786278 67786668 -82996885 + L2 LINE L2 2522 3023 -290 1899 96 0 32 chr11 67786697 67786978 -82996575 + AluSx SINE Alu 2 273 -39 1192 140 4 95 chr11 67786978 67787221 -82996332 + AluJb SINE Alu 77 297 -15 406 267 1 0 chr11 67787324 67787428 -82996125 + MIR SINE MIR 55 158 -63 194 243 0 0 chr11 67787923 67787960 -82995593 + MIR SINE MIR 41 77 -185 315 340 21 7 chr11 67788919 67789063 -82994490 - MIR SINE MIR -12 250 105 2121 112 0 23 chr11 67789256 67789560 -82993993 - AluSx SINE Alu -15 297 1 251 146 12 37 chr11 67790221 67790303 -82993250 + (CA)n Simple_repeat Simple_repeat 1 80 0 184 122 20 61 chr11 67790322 67790420 -82993133 + (CA)n Simple_repeat Simple_repeat 1 94 0 1826 155 3 23 chr11 67790550 67790854 -82992699 - AluJb SINE Alu -6 306 9 807 157 0 0 chr11 67790873 67790994 -82992559 - AluJb SINE Alu -4 308 188 1635 109 0 5 chr11 67790994 67791214 -82992339 - AluSx SINE Alu -93 219 1 1848 153 14 0 chr11 67791248 67791529 -82992024 - AluJb SINE Alu -27 285 1 275 356 34 8 chr11 67792718 67792836 -82990717 - MIR SINE MIR -29 233 113 323 254 9 61 chr11 67795041 67795155 -82988398 - MIR SINE MIR -69 193 86 363 337 124 16 chr11 67795200 67795338 -82988215 + MIR SINE MIR 37 203 -59 2232 103 0 0 chr11 67795338 67795640 -82987913 + AluSq SINE Alu 1 302 -11 363 337 124 16 chr11 67795640 67795694 -82987859 + MIR SINE MIR 203 250 -12 243 291 47 87 chr11 67796041 67796213 -82987340 - MIR3 SINE MIR -31 177 13 272 247 67 45 chr11 67796472 67796561 -82986992 - MIR SINE MIR -112 150 60 222 391 29 7 chr11 67797020 67797158 -82986395 + MIR SINE MIR 83 223 -39 188 188 238 0 chr11 67797457 67797537 -82986016 + L2 LINE L2 1801 1899 -1415 277 268 98 39 chr11 67797876 67798198 -82985355 + L2 LINE L2 2559 2975 -297 2084 113 10 13 chr11 67798198 67798509 -82985044 - AluSx SINE Alu -2 310 1 277 268 98 39 chr11 67798509 67798532 -82985021 + L2 LINE L2 2975 2995 -277 307 256 111 0 chr11 67798600 67798747 -82984806 - L2 LINE L2 -195 3077 2905 1545 144 0 50 chr11 67799202 67799318 -82984235 + AluJb SINE Alu 30 150 -162 2389 86 3 0 chr11 67799318 67799622 -82983931 + AluSq SINE Alu 1 305 -8 1545 144 0 50 chr11 67799622 67799783 -82983770 + AluJb SINE Alu 150 293 -19 2336 94 0 3 chr11 67800576 67800885 -82982668 - AluSx SINE Alu -4 308 1 918 102 7 34 chr11 67801887 67802034 -82981519 - FLAM_C SINE Alu 0 143 1 291 244 77 0 chr11 67802045 67802123 -82981430 - MIR SINE MIR -70 192 109 1822 153 3 13 chr11 67802395 67802531 -82981022 + AluJb SINE Alu 1 137 -175 2321 91 3 0 chr11 67802531 67802839 -82980714 + AluSg SINE Alu 1 309 -1 1822 153 3 13 chr11 67802839 67803002 -82980551 + AluJb SINE Alu 137 297 -15 2333 80 3 6 chr11 67803004 67803317 -82980236 + AluSp SINE Alu 1 312 -1 584 225 111 70 chr11 67803953 67804014 -82979539 + L1ME3 LINE L1 5638 5695 -467 1889 135 0 35 chr11 67804014 67804326 -82979227 + AluJo SINE Alu 1 301 -11 584 225 111 70 chr11 67804326 67804382 -82979171 + L1ME3 LINE L1 5695 5747 -415 2156 113 7 0 chr11 67804382 67804691 -82978862 + AluSx SINE Alu 1 311 -1 584 225 111 70 chr11 67804691 67804816 -82978737 + L1ME3 LINE L1 5747 5891 -271 262 277 180 0 chr11 67804869 67804976 -82978577 + L1ME3 LINE L1 6007 6130 -32 804 168 0 0 chr11 67805143 67805268 -82978285 + FLAM_C SINE Alu 1 125 -8 848 108 0 31 chr11 67805291 67805421 -82978132 + AluJb SINE Alu 13 138 -174 1678 137 3 55 chr11 67805427 67805563 -82977990 + AluJo SINE Alu 13 128 -184 1782 142 21 7 chr11 67805563 67805845 -82977708 + AluJb SINE Alu 13 298 -14 1678 137 3 55 chr11 67805845 67806001 -82977552 + AluJo SINE Alu 128 290 -22 23 0 0 0 chr11 67806001 67806024 -82977529 + AT_rich Low_complexity Low_complexity 1 23 0 2267 86 0 13 chr11 67806024 67806328 -82977225 + AluY SINE Alu 1 300 -11 1866 141 0 7 chr11 67806330 67806614 -82976939 + AluSg SINE Alu 1 317 0 316 0 0 0 chr11 67806614 67806649 -82976904 + (CAAA)n Simple_repeat Simple_repeat 2 164 0 646 201 134 7 chr11 67806654 67806803 -82976750 + FAM SINE Alu 1 168 -7 1071 98 40 40 chr11 67806803 67806823 -82976730 + AluSq SINE Alu 138 305 -8 * 1418 217 135 42 chr11 67806819 67807322 -82976231 + MLT1F1 LTR MaLR 13 562 -5 413 336 140 8 chr11 67807466 67807731 -82975822 + L2 LINE L2 3013 3312 -1 274 283 35 69 chr11 67808767 67808912 -82974641 + MIR3 SINE MIR 38 177 -31 21 0 0 0 chr11 67809406 67809427 -82974126 + GC_rich Low_complexity Low_complexity 1 21 0 201 74 0 0 chr11 67810289 67810316 -82973237 + (T)n Simple_repeat Simple_repeat 1 27 0 2284 86 0 3 chr11 67810327 67810628 -82972925 + AluSg SINE Alu 1 300 -10 21 82 0 0 chr11 67810651 67810700 -82972853 + AT_rich Low_complexity Low_complexity 1 49 0 1463 172 3 40 chr11 67810759 67811055 -82972498 + AluJo SINE Alu 15 299 -13 1668 232 50 17 chr11 67811863 67812345 -82971208 - MLT1D LTR MaLR 0 505 8 2081 119 0 32 chr11 67812427 67812738 -82970815 + AluSx SINE Alu 1 301 -11 672 254 0 0 chr11 67812740 67812870 -82970683 + FLAM_A SINE Alu 3 132 -1 1926 118 41 0 chr11 67812879 67813171 -82970382 - AluSx SINE Alu 0 303 1 215 315 0 65 chr11 67813456 67813564 -82969989 - L2 LINE L2 -247 3025 2925 661 179 137 30 chr11 67814025 67814193 -82969360 - AluJ SINE Alu -7 305 120 227 252 13 53 chr11 67815848 67815999 -82967554 + G-rich Low_complexity Low_complexity 5 149 0 5118 70 101 7 chr11 67816168 67816931 -82966622 - SVA Other Other -531 855 21 885 165 0 0 chr11 67816940 67817073 -82966480 - AluJ SINE Alu -169 133 1 458 242 186 48 chr11 67817171 67817419 -82966134 - MLT1F LTR MaLR -6 536 255 2143 118 3 0 chr11 67817995 67818292 -82965261 - AluSx SINE Alu -14 298 1 1299 155 140 11 chr11 67818617 67818746 -82964807 + AluJo SINE Alu 1 112 -200 2186 100 7 0 chr11 67818746 67819046 -82964507 + AluSp SINE Alu 1 302 -11 1299 155 140 11 chr11 67819046 67819180 -82964373 + AluJo SINE Alu 112 298 -14 660 120 9 0 chr11 67819191 67819299 -82964254 + MLT1B LTR MaLR 1 109 -281 2090 109 0 3 chr11 67819299 67819582 -82963971 + AluSx SINE Alu 1 282 -30 2209 43 11 14 chr11 67820733 67821015 -82962538 + AluY SINE Alu 1 281 -30 401 20 0 0 chr11 67821016 67821067 -82962486 + AluY SINE Alu 248 298 -13 1514 170 13 22 chr11 67821074 67821385 -82962168 + AluSx SINE Alu 1 308 -4 1626 152 40 24 chr11 67821402 67821699 -82961854 - AluJo SINE Alu -10 302 1 1032 85 0 0 chr11 67821951 67822081 -82961472 + AluSg SINE Alu 1 130 -180 2230 96 3 0 chr11 67822097 67822390 -82961163 + AluSg SINE Alu 1 294 -16 183 320 269 7 chr11 67823415 67823724 -82959829 + L2 LINE L2 2469 2858 -456 310 286 31 20 chr11 67825344 67825442 -82958111 - MIR3 SINE MIR -24 184 86 2278 57 17 3 chr11 67826969 67827094 -82956459 + AluY SINE Alu 1 123 -188 189 0 0 0 chr11 67827094 67827115 -82956438 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2278 57 17 3 chr11 67827115 67827287 -82956266 + AluY SINE Alu 123 302 -9 1936 115 49 3 chr11 67827301 67827587 -82955966 + AluSq SINE Alu 5 303 -10 293 276 83 26 chr11 67829755 67829911 -82953642 + L1MC4 LINE L1 7494 7658 -384 878 148 28 50 chr11 67829947 67829965 -82953588 + AluSg/x SINE Alu 118 135 -177 1732 157 3 10 chr11 67829965 67830271 -82953282 + AluSx SINE Alu 2 305 -7 878 148 28 50 chr11 67830271 67830434 -82953119 + AluSg/x SINE Alu 135 295 -17 427 284 132 5 chr11 67830489 67830693 -82952860 + MER112 DNA MER1_type 30 259 -1 1871 136 0 34 chr11 67830895 67831067 -82952486 - AluSx SINE Alu -6 306 130 183 42 0 0 chr11 67831067 67831091 -82952462 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2200 71 11 11 chr11 67831091 67831373 -82952180 - AluSp SINE Alu -30 283 2 1871 136 0 34 chr11 67831373 67831493 -82952060 - AluSx SINE Alu -180 132 23 1298 189 57 57 chr11 67831629 67831806 -82951747 + AluJo SINE Alu 1 180 -132 2282 97 3 0 chr11 67831806 67832106 -82951447 + AluSp SINE Alu 1 301 -12 1298 189 57 57 chr11 67832106 67832224 -82951329 + AluJo SINE Alu 179 296 -16 2190 94 7 0 chr11 67832227 67832524 -82951029 + AluSg SINE Alu 1 299 -11 694 192 13 26 chr11 67832768 67832919 -82950634 - SVA Other Other -783 603 455 2329 86 0 3 chr11 67832933 67833235 -82950318 + AluSx SINE Alu 3 303 -9 1949 147 3 10 chr11 67834402 67834701 -82948852 + AluSx SINE Alu 1 297 -15 822 203 0 0 chr11 67834701 67834839 -82948714 + FLAM_C SINE Alu 1 138 -5 2094 108 0 7 chr11 67835996 67836316 -82947237 - AluSx SINE Alu 0 318 1 620 167 111 0 chr11 67836818 67836926 -82946627 - FLAM_C SINE Alu -9 124 5 2198 120 0 0 chr11 67837014 67837315 -82946238 + AluSx SINE Alu 1 301 -11 2010 141 0 3 chr11 67838963 67839262 -82944291 - AluJb SINE Alu -14 298 1 230 65 109 0 chr11 67839266 67839312 -82944241 - L1M3 LINE L1 -579 5604 5554 1206 154 8 69 chr11 67840142 67840402 -82943151 - AluSq SINE Alu -1 312 69 283 268 70 0 chr11 67841469 67841540 -82942013 + MIR SINE MIR 46 121 -87 2261 95 0 0 chr11 67841544 67841840 -82941713 - AluSx SINE Alu -16 296 1 806 148 7 28 chr11 67841883 67842025 -82941528 - L1MB7 LINE L1 -19 6165 6027 274 311 123 8 chr11 67842025 67842147 -82941406 + MIR SINE MIR 122 257 -5 2209 116 0 0 chr11 67842548 67842849 -82940704 - AluSx SINE Alu -11 301 1 412 277 50 80 chr11 67844493 67844678 -82938875 - MIR SINE MIR -17 245 67 1801 146 3 44 chr11 67844678 67844993 -82938560 + AluSx SINE Alu 1 302 -10 412 277 50 80 chr11 67844993 67845045 -82938508 - MIR SINE MIR -195 67 15 290 236 120 0 chr11 67846004 67846138 -82937415 + MIR3 SINE MIR 6 164 -60 434 222 111 8 chr11 67846530 67846656 -82936897 - MIR SINE MIR -93 169 31 227 196 36 18 chr11 67847296 67847352 -82936201 + MIR SINE MIR 103 159 -103 294 252 68 10 chr11 67847674 67847777 -82935776 + MIR SINE MIR 103 211 -51 244 271 23 70 chr11 67848187 67848316 -82935237 - L1ME3 LINE L1 -2 6160 6038 279 275 45 73 chr11 67848407 67848585 -82934968 + L2 LINE L2 2855 3027 -245 501 306 44 33 chr11 67850541 67850721 -82932832 + MIR SINE MIR 69 250 -12 273 269 97 0 chr11 67851277 67851370 -82932183 + MIR SINE MIR 87 188 -74 455 158 97 53 chr11 67851768 67851882 -82931671 + MIR3 SINE MIR 49 167 -41 221 222 9 37 chr11 67852912 67853020 -82930533 + GA-rich Low_complexity Low_complexity 3 107 0 200 200 22 0 chr11 67853031 67853076 -82930477 + G-rich Low_complexity Low_complexity 3 48 0 215 308 86 17 chr11 67853489 67853606 -82929947 - MIR SINE MIR -70 192 68 213 268 71 80 chr11 67854462 67854686 -82928867 + L2 LINE L2 3051 3272 0 438 192 10 10 chr11 67854771 67854870 -82928683 + MER103 DNA DNA 22 120 -46 305 276 99 29 chr11 67854915 67855065 -82928488 + MIR SINE MIR 5 160 -66 202 287 157 35 chr11 67855230 67855345 -82928208 - L2 LINE L2 -85 3187 3059 307 297 246 38 chr11 67855360 67855778 -82927775 - L3 LINE CR1 -87 1490 986 1025 103 0 0 chr11 67855920 67856056 -82927497 + AluSq/x SINE Alu 1 136 -177 2075 100 7 23 chr11 67856056 67856365 -82927188 + AluSg1 SINE Alu 1 304 -5 2040 108 0 14 chr11 67858323 67858619 -82924934 - AluSx SINE Alu -16 296 5 356 352 103 12 chr11 67859989 67860310 -82923243 + L2 LINE L2 2625 2974 -340 458 279 101 61 chr11 67861089 67861336 -82922217 + L2 LINE L2 3016 3272 0 308 335 98 63 chr11 67861357 67861611 -82921942 + L1MEd LINE L1 955 1217 -4902 581 190 0 5 chr11 67861612 67861832 -82921721 + (TGGA)n Simple_repeat Simple_repeat 1 218 0 269 214 0 18 chr11 67862887 67862943 -82920610 - L2 LINE L2 -19 3294 3240 186 288 17 17 chr11 67863168 67863227 -82920326 - L2 LINE L2 -506 2808 2750 2149 97 3 13 chr11 67864694 67864994 -82918559 + AluSc SINE Alu 1 297 -12 298 213 25 38 chr11 67866651 67866731 -82916822 - MIR3 SINE MIR -49 159 81 181 221 195 39 chr11 67867748 67867825 -82915728 + MIR3 SINE MIR 89 177 -31 219 275 25 38 chr11 67868353 67868433 -82915120 - MIR3 SINE MIR -49 159 81 222 247 258 21 chr11 67869450 67869547 -82914006 + MIR3 SINE MIR 89 208 0 424 206 176 37 chr11 67869997 67870133 -82913420 - L2 LINE L2 -1 3312 3158 2020 114 11 7 chr11 67870476 67870789 -82912764 - AluSx SINE Alu 0 314 1 2184 78 3 0 chr11 67871658 67871940 -82911613 + AluSp SINE Alu 19 301 -12 433 256 17 100 chr11 67873640 67873776 -82909777 - MIR SINE MIR -52 210 91 1939 141 10 3 chr11 67873776 67874080 -82909473 + AluJb SINE Alu 1 306 -6 433 256 17 100 chr11 67874080 67874123 -82909430 - MIR SINE MIR -171 91 46 231 286 14 0 chr11 67875155 67875225 -82908328 + MIR3 SINE MIR 85 155 -53 293 310 85 23 chr11 67875581 67875710 -82907843 + MIR SINE MIR 8 144 -118 697 245 215 26 chr11 67875757 67875843 -82907710 - L2 LINE L2 -64 3249 3181 2042 115 6 16 chr11 67875843 67876155 -82907398 + AluSc SINE Alu 1 309 0 697 245 215 26 chr11 67876155 67876407 -82907146 - L2 LINE L2 -132 3181 2847 442 273 133 6 chr11 67876700 67876865 -82906688 + MIR SINE MIR 39 224 -38 329 224 0 0 chr11 67876905 67876972 -82906581 + L2 LINE L2 3245 3311 -2 1100 129 0 14 chr11 67876972 67877327 -82906226 + (TGGA)n Simple_repeat Simple_repeat 1 351 0 862 148 11 0 chr11 67877346 67877522 -82906031 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 1065 123 0 0 chr11 67877547 67877726 -82905827 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 989 123 6 0 chr11 67877766 67877945 -82905608 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 942 154 4 11 chr11 67877961 67878410 -82905143 + (TGGA)n Simple_repeat Simple_repeat 1 446 0 216 338 181 0 chr11 67878430 67878634 -82904919 - L2 LINE L2 -163 3109 2869 232 301 14 0 chr11 67879911 67879984 -82903569 + (CCA)n Simple_repeat Simple_repeat 1 74 0 2138 96 14 0 chr11 67884038 67884329 -82899224 + AluSq SINE Alu 1 295 -18 192 125 0 0 chr11 67885607 67885639 -82897914 + (GGAAA)n Simple_repeat Simple_repeat 3 34 0 273 260 167 0 chr11 67887490 67887586 -82895967 + L3 LINE CR1 1426 1537 -40 2286 93 3 0 chr11 67888309 67888609 -82894944 - AluSp SINE Alu -12 301 1 207 300 17 0 chr11 67889002 67889062 -82894491 + L2 LINE L2 3189 3249 -23 186 43 0 0 chr11 67891958 67891981 -82891572 + (CAGC)n Simple_repeat Simple_repeat 1 23 0 328 325 123 6 chr11 67892873 67893036 -82890517 + MIR SINE MIR 49 230 -32 255 354 62 0 chr11 67893485 67893615 -82889938 + L3 LINE CR1 1333 1470 -107 1948 109 35 0 chr11 67894970 67895255 -82888298 - AluSx SINE Alu -17 295 1 337 248 69 10 chr11 67895337 67895438 -82888115 - L2 LINE L2 -14 3299 3193 259 294 113 12 chr11 67896430 67896598 -82886955 - MIR SINE MIR -45 217 35 381 342 42 17 chr11 67897510 67897750 -82885803 - L2 LINE L2 -216 3056 2811 395 283 37 6 chr11 67898317 67898495 -82885058 - L1M3 LINE L1 -702 5468 5265 204 97 0 0 chr11 67899879 67899910 -82883643 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 211 344 62 21 chr11 67899964 67900060 -82883493 + MIR SINE MIR 87 186 -76 391 234 28 37 chr11 67901693 67901800 -82881753 - MIR SINE MIR -109 153 48 2309 85 3 0 chr11 67902401 67902696 -82880857 - AluSx SINE Alu -16 296 1 2475 60 0 0 chr11 67903304 67903605 -82879948 + AluY SINE Alu 1 301 -10 748 308 26 22 chr11 67904234 67904461 -82879092 - MIR SINE MIR 0 262 35 1966 148 0 0 chr11 67904482 67904772 -82878781 + AluJb SINE Alu 1 290 -22 328 284 20 10 chr11 67905488 67905590 -82877963 + MIR SINE MIR 35 137 -71 193 372 44 9 chr11 67905586 67905699 -82877854 + L2 LINE L2 3138 3254 -18 * 772 185 0 22 chr11 67905877 67906012 -82877541 + AluJb SINE Alu 1 132 -180 1780 151 20 0 chr11 67906463 67906755 -82876798 + AluJo SINE Alu 1 298 -14 221 116 0 23 chr11 67906755 67906798 -82876755 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 201 305 17 0 chr11 68107128 68107187 -82676366 - MIR SINE MIR -107 155 96 262 289 86 20 chr11 68108094 68108246 -82675307 + MIR SINE MIR 89 250 -12 797 141 0 0 chr11 68108252 68108373 -82675180 + FLAM_C SINE Alu 2 122 -11 682 130 113 0 chr11 68108840 68108955 -82674598 + FLAM_A SINE Alu 1 128 -5 732 188 94 0 chr11 68109114 68109263 -82674290 - FRAM SINE Alu -2 164 2 2278 113 0 3 chr11 68109279 68109588 -82673965 - AluY SINE Alu -2 309 2 1437 151 9 0 chr11 68109648 68109866 -82673687 - AluJo SINE Alu -92 220 1 416 290 185 30 chr11 68109976 68110167 -82673386 - L2 LINE L2 -25 3288 3128 2433 63 3 0 chr11 68110167 68110453 -82673100 + AluSc SINE Alu 1 287 -22 416 290 185 30 chr11 68110453 68110747 -82672806 - L2 LINE L2 -185 3128 2727 615 192 13 45 chr11 68110751 68110907 -82672646 - L2 LINE L2 -718 2596 2446 2364 79 3 0 chr11 68110920 68111210 -82672343 + AluY SINE Alu 1 291 -20 2293 123 0 0 chr11 68111218 68111528 -82672025 + AluSx SINE Alu 1 310 -2 2188 97 3 13 chr11 68111535 68111843 -82671710 + AluY SINE Alu 1 305 -6 2219 101 6 0 chr11 68111843 68112170 -82671383 + L1PA13 LINE L1 5824 6152 -11 2122 108 0 10 chr11 68112189 68112477 -82671076 + AluSx SINE Alu 1 285 -27 1876 153 38 0 chr11 68112620 68112908 -82670645 - AluJb SINE Alu -13 299 1 496 251 51 64 chr11 68112922 68113157 -82670396 + MER102b DNA MER1_type 107 338 -3 2176 106 10 7 chr11 68113245 68113538 -82670015 + AluSx SINE Alu 1 294 -18 687 173 0 38 chr11 68113601 68113734 -82669819 + FLAM_C SINE Alu 1 128 -5 2521 65 0 0 chr11 68113977 68114270 -82669283 + AluY SINE Alu 1 293 -18 2007 92 92 11 chr11 68114370 68114654 -82668899 - AluSg SINE Alu -3 307 1 2211 127 0 13 chr11 68114850 68115166 -82668387 - AluSx SINE Alu 0 312 1 875 154 0 21 chr11 68115166 68115309 -82668244 - FLAM_C SINE Alu -3 140 1 241 235 49 29 chr11 68115312 68115414 -82668139 - MIR SINE MIR -50 212 109 249 228 152 0 chr11 68115531 68115623 -82667930 + MIR SINE MIR 92 197 -65 2128 123 13 3 chr11 68115912 68116213 -82667340 - AluSc SINE Alu -5 304 1 21 0 0 0 chr11 68116213 68116234 -82667319 + AT_rich Low_complexity Low_complexity 1 21 0 1342 175 0 4 chr11 68116258 68116487 -82667066 - AluJb SINE Alu 0 312 85 491 230 142 20 chr11 68118567 68118715 -82664838 + MIR SINE MIR 15 180 -82 799 50 0 0 chr11 68119040 68119140 -82664413 - HY3 scRNA scRNA -1 100 1 2326 81 3 14 chr11 68120052 68120349 -82663204 - AluSg SINE Alu -15 295 2 2335 110 13 0 chr11 68120360 68120669 -82662884 - AluSq SINE Alu 0 313 1 2492 73 0 13 chr11 68120669 68120835 -82662718 - AluSx SINE Alu -13 299 137 2316 108 3 3 chr11 68120835 68121142 -82662411 - AluSx SINE Alu -5 307 1 2492 73 0 13 chr11 68121142 68121278 -82662275 - AluSx SINE Alu -175 137 1 1104 62 0 0 chr11 68121281 68121410 -82662143 - AluSg SINE Alu -179 131 3 299 42 104 0 chr11 68121412 68121460 -82662093 + MER41B LTR ERV1 512 564 -71 287 234 234 7 chr11 68121740 68121894 -82661659 + MLT1H LTR MaLR 136 324 -225 340 206 84 99 chr11 68121936 68122067 -82661486 + MLT1H LTR MaLR 414 549 0 1707 161 7 20 chr11 68122174 68122466 -82661087 + AluJb SINE Alu 1 288 -24 2382 86 3 7 chr11 68123669 68123970 -82659583 + AluSx SINE Alu 1 300 -12 394 205 0 0 chr11 68123977 68124055 -82659498 + MER82 DNA MER2_type 570 647 -6 396 255 195 0 chr11 68124578 68124727 -82658826 - MER45A DNA AcHobo 0 178 1 189 371 84 7 chr11 68125067 68125210 -82658343 - L2 LINE L2 -4 3268 3115 749 120 26 0 chr11 68125306 68125423 -82658130 + MLT2B2 LTR ERVL 388 507 -8 2050 119 7 17 chr11 68125778 68126072 -82657481 + AluSq SINE Alu 1 291 -22 222 301 96 44 chr11 68126839 68127068 -82656485 - L2 LINE L2 -1473 1841 1601 3543 127 6 0 chr11 68127083 68127625 -82655928 + MER41B LTR ERV1 3 547 -88 1203 179 88 110 chr11 68127625 68128078 -82655475 + LTR7 LTR ERV1 1 443 -7 481 218 0 0 chr11 68128086 68128173 -82655380 + MER41A LTR ERV1 468 554 0 342 288 103 45 chr11 68128276 68128519 -82655034 + MER20B DNA MER1_type 38 294 -489 1940 146 13 32 chr11 68128524 68128839 -82654714 - AluJo SINE Alu -1 311 3 657 220 0 0 chr11 68128839 68128971 -82654582 - AluJo SINE Alu -176 136 5 459 290 16 0 chr11 68129115 68129239 -82654314 - MER20B DNA MER1_type -348 435 310 3130 220 59 45 chr11 68129734 68130234 -82653319 + L1ME2 LINE L1 4270 4762 -1422 2355 99 7 0 chr11 68130234 68130536 -82653017 + AluSx SINE Alu 1 304 -8 3130 220 59 45 chr11 68130536 68131191 -82652362 + L1ME2 LINE L1 4762 5406 -778 1722 181 28 0 chr11 68131191 68131479 -82652074 + AluJo SINE Alu 1 296 -16 3130 220 59 45 chr11 68131479 68132030 -82651523 + L1ME2 LINE L1 5406 6180 -4 2202 145 3 0 chr11 68132253 68132563 -82650990 + AluSp SINE Alu 1 311 -2 1407 189 7 113 chr11 68132600 68133008 -82650545 + MLT1A1 LTR MaLR 1 365 0 489 209 63 89 chr11 68133397 68133543 -82650010 + LTR16A1 LTR ERVL 272 413 -44 2196 133 0 0 chr11 68133543 68133844 -82649709 + AluSx SINE Alu 1 301 -11 489 209 63 89 chr11 68133844 68133888 -82649665 + LTR16A1 LTR ERVL 413 457 0 263 254 16 0 chr11 68134399 68134462 -82649091 - MIR SINE MIR 0 262 199 1728 126 122 4 chr11 68135340 68135611 -82647942 - AluJo SINE Alu -9 303 1 1691 110 4 13 chr11 68135702 68135938 -82647615 - AluSc SINE Alu -75 234 1 1111 237 78 82 chr11 68135971 68136435 -82647118 + MLT1C LTR MaLR 6 467 0 2433 95 0 3 chr11 68137908 68138212 -82645341 - AluSx SINE Alu -9 303 1 1022 165 15 15 chr11 68138242 68138442 -82645111 + MLT1B LTR MaLR 1 200 -190 501 202 109 80 chr11 68138471 68138951 -82644602 - MER66A LTR ERV1 0 486 97 984 181 11 0 chr11 68138952 68139129 -82644424 + MLT1B LTR MaLR 212 390 0 2356 104 13 0 chr11 68139474 68139782 -82643771 + AluSp SINE Alu 1 312 -1 481 264 102 37 chr11 68139787 68140082 -82643471 + L1ME4a LINE L1 5593 5906 -215 23 0 0 0 chr11 68140253 68140276 -82643277 + AT_rich Low_complexity Low_complexity 1 23 0 441 300 45 29 chr11 68140388 68140603 -82642950 + L1MC/D LINE L1 5467 5682 -459 201 147 0 0 chr11 68140943 68140977 -82642576 + (A)n Simple_repeat Simple_repeat 1 34 0 434 277 27 7 chr11 68141054 68141202 -82642351 + HAL1b LINE L1 1198 1348 0 1904 174 125 7 chr11 68141960 68142369 -82641184 - MLT1C LTR MaLR 0 467 11 1762 189 31 0 chr11 68142906 68143192 -82640361 + AluJb SINE Alu 1 295 -17 748 216 6 6 chr11 68143262 68143429 -82640124 + ERVL LTR ERVL 3750 3916 -1848 237 33 0 0 chr11 68143441 68143471 -82640082 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2166 107 0 0 chr11 68143475 68143747 -82639806 - AluSc SINE Alu -37 272 1 2574 238 81 39 chr11 68143768 68144244 -82639309 - MER21B LTR ERV1 -61 802 281 1908 144 48 0 chr11 68144244 68144535 -82639018 - AluSx SINE Alu -7 305 1 2574 238 81 39 chr11 68144535 68144811 -82638742 - MER21B LTR ERV1 -582 281 18 1362 130 9 43 chr11 68144886 68145116 -82638437 + AluJb SINE Alu 87 308 -4 2273 103 3 3 chr11 68145178 68145478 -82638075 + AluSp SINE Alu 1 300 -13 2235 102 3 3 chr11 68145681 68145975 -82637578 - AluSx SINE Alu -18 294 1 2727 298 28 19 chr11 68145990 68146735 -82636818 + ERVL LTR ERVL 2033 2790 -2974 1649 195 84 11 chr11 68146735 68147104 -82636449 + MSTD LTR MaLR 1 396 0 2727 298 28 19 chr11 68147104 68147308 -82636245 + ERVL LTR ERVL 2790 2991 -2773 816 171 57 17 chr11 68147358 68147534 -82636019 - MSTD LTR MaLR -58 338 156 796 286 15 45 chr11 68147549 68147808 -82635745 + ERVL LTR ERVL 3053 3302 -2352 2244 107 0 14 chr11 68147808 68148123 -82635430 + AluSp SINE Alu 1 311 0 796 286 15 45 chr11 68148123 68148198 -82635355 + ERVL LTR ERVL 3302 3378 -2276 1125 303 52 10 chr11 68148210 68148610 -82634943 - LTR16A LTR ERVL -6 444 28 3936 270 55 35 chr11 68148806 68149017 -82634536 + ERVL LTR ERVL 3667 3872 -1892 932 206 61 14 chr11 68149017 68149231 -82634322 + MER58A DNA MER1_type 1 224 0 3936 270 55 35 chr11 68149231 68150297 -82633256 + ERVL LTR ERVL 3872 4978 -786 2493 80 3 6 chr11 68150297 68150611 -82632942 + AluSp SINE Alu 1 313 0 3936 270 55 35 chr11 68150611 68150720 -82632833 + ERVL LTR ERVL 4978 5083 -681 1638 174 37 72 chr11 68150972 68151375 -82632178 + MLT1B LTR MaLR 2 390 0 1128 191 228 31 chr11 68151517 68151675 -82631878 + LTR50 LTR ERVL 3 129 -666 2260 109 0 0 chr11 68151675 68152057 -82631496 + AluSq SINE Alu 1 382 0 1128 191 228 31 chr11 68152057 68152488 -82631065 + LTR50 LTR ERVL 129 795 0 2552 81 0 0 chr11 68153205 68153515 -82630038 - AluSx SINE Alu -2 310 1 731 253 18 85 chr11 68153697 68153803 -82629750 + MIR SINE MIR 1 113 -149 1162 187 0 138 chr11 68153803 68154150 -82629403 - AluY SINE Alu -2 299 1 731 253 18 85 chr11 68154150 68154324 -82629229 + MIR SINE MIR 113 262 0 1937 179 8 54 chr11 68154787 68155177 -82628376 + MER77 LTR ERV1 1 372 -233 2304 96 3 7 chr11 68155207 68155508 -82628045 - AluSp SINE Alu -13 300 1 783 162 0 0 chr11 68155939 68156188 -82627365 + (TG)n Simple_repeat Simple_repeat 1 249 0 1682 151 30 30 chr11 68156363 68156661 -82626892 - AluJb SINE Alu -14 298 1 1413 128 55 38 chr11 68156751 68156842 -82626711 + MER31A LTR ERV1 2 90 -395 2348 100 7 7 chr11 68156842 68157143 -82626410 + AluSx SINE Alu 1 301 -11 1413 128 55 38 chr11 68157143 68157423 -82626130 + MER31A LTR ERV1 90 485 0 240 261 85 40 chr11 68158013 68158189 -82625364 + L2 LINE L2 2910 3093 -179 574 339 0 0 chr11 68159170 68159344 -82624209 - L2 LINE L2 0 3313 3140 637 274 70 90 chr11 68159505 68159845 -82623708 - L2 LINE L2 -412 2902 2557 207 0 0 0 chr11 68159845 68159868 -82623685 + (TG)n Simple_repeat Simple_repeat 2 24 0 2091 103 19 16 chr11 68159873 68160184 -82623369 - AluSx SINE Alu 0 312 1 637 274 70 90 chr11 68160184 68160293 -82623260 - L2 LINE L2 -761 2553 2456 3587 173 77 28 chr11 68160306 68160750 -82622803 - L1MB5 LINE L1 -8 6166 5667 1523 195 3 30 chr11 68160750 68160871 -82622682 - AluJb SINE Alu 0 312 189 2160 81 27 3 chr11 68160871 68161168 -82622385 - AluSp SINE Alu -9 304 1 1523 195 3 30 chr11 68161168 68161371 -82622182 - AluJb SINE Alu -123 189 1 3587 173 77 28 chr11 68161371 68161691 -82621862 - L1MB5 LINE L1 -507 5667 5364 241 205 295 25 chr11 68161695 68161817 -82621736 - L2 LINE L2 -859 2455 2301 3269 78 2 0 chr11 68161821 68162256 -82621297 + MER41A LTR ERV1 1 436 -118 2331 73 0 13 chr11 68162262 68162426 -82621127 - AluSx SINE Alu -15 297 137 2181 108 3 3 chr11 68162426 68162733 -82620820 - AluSx SINE Alu -5 307 1 2331 73 0 13 chr11 68162733 68162869 -82620684 - AluSx SINE Alu -175 137 1 1060 61 0 0 chr11 68162872 68163003 -82620550 - AluSg SINE Alu -179 131 1 840 67 42 0 chr11 68163003 68163122 -82620431 + MER41B LTR ERV1 512 635 0 182 258 45 0 chr11 68163127 68163193 -82620360 - L2 LINE L2 -1020 2294 2226 532 291 132 25 chr11 68163249 68163575 -82619978 - L2 LINE L2 -1242 2072 1712 217 194 312 11 chr11 68163644 68163830 -82619723 - L2 LINE L2 -1853 1461 1220 2294 187 101 2 chr11 68164874 68164889 -82618664 + L1M3 LINE L1 4878 4890 -1293 2022 119 30 7 chr11 68164889 68165184 -82618369 + AluSx SINE Alu 1 302 -10 2294 187 101 2 chr11 68165184 68165471 -82618082 + L1M3 LINE L1 4890 5147 -1036 1864 119 61 0 chr11 68165471 68165748 -82617805 - AluSx SINE Alu -18 294 1 2294 187 101 2 chr11 68165748 68166239 -82617314 + L1M3 LINE L1 5147 5759 -424 292 153 0 0 chr11 68166239 68166294 -82617259 - THE1A LTR MaLR 0 355 308 189 0 0 0 chr11 68166294 68166315 -82617238 + (T)n Simple_repeat Simple_repeat 1 21 0 1962 141 7 0 chr11 68166518 68166822 -82616731 - AluSx SINE Alu -6 306 1 1497 155 148 4 chr11 68166845 68167109 -82616444 - AluJo SINE Alu 0 302 1 823 273 52 50 chr11 68167187 68167527 -82616026 - L1MC4a LINE L1 -298 5823 5533 299 315 0 0 chr11 68168410 68168518 -82615035 + (TG)n Simple_repeat Simple_repeat 1 108 0 359 265 9 11 chr11 68168561 68169036 -82614517 + (TG)n Simple_repeat Simple_repeat 1 473 0 435 237 0 0 chr11 68169049 68169226 -82614327 + (TG)n Simple_repeat Simple_repeat 1 177 0 2214 107 0 0 chr11 68169924 68170215 -82613338 - AluSx SINE Alu -13 299 9 213 60 20 40 chr11 68170677 68170727 -82612826 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 1969 96 4 4 chr11 68170735 68171005 -82612548 - AluSc SINE Alu -38 271 2 228 196 78 0 chr11 68171429 68171480 -82612073 - MLT1J2 LTR MaLR -290 160 106 641 318 95 53 chr11 68171577 68172074 -82611479 + L2 LINE L2 2586 3126 -146 1745 132 92 0 chr11 68172074 68172347 -82611206 - AluSg SINE Alu -12 298 1 641 318 95 53 chr11 68172347 68172501 -82611052 + L2 LINE L2 3126 3272 0 303 254 0 0 chr11 68172689 68172760 -82610793 + MIR SINE MIR 63 133 -75 591 318 23 0 chr11 68173011 68173184 -82610369 + MIR SINE MIR 50 226 -36 312 285 57 0 chr11 68173684 68173781 -82609772 + MER5A DNA MER1_type 67 159 -19 869 149 7 7 chr11 68173790 68173931 -82609622 + FRAM SINE Alu 21 161 -15 239 305 49 0 chr11 68173994 68174076 -82609477 - MIR SINE MIR -121 141 56 197 158 26 0 chr11 68174741 68174779 -82608774 - MIR SINE MIR -12 250 212 343 301 49 24 chr11 68174930 68175053 -82608500 - MIR3 SINE MIR -45 163 38 1271 190 40 0 chr11 68175424 68175671 -82607882 - Tigger3(Golem) DNA MER2_type -1 3028 2772 376 171 0 53 chr11 68175675 68175751 -82607802 - Tigger3(Golem) DNA MER2_type -2893 136 65 425 157 0 12 chr11 68175771 68175854 -82607699 + CT-rich Low_complexity Low_complexity 3 84 0 413 213 0 0 chr11 68175870 68175950 -82607603 - FLAM SINE Alu -25 118 39 662 176 0 0 chr11 68175956 68176058 -82607495 - AluSq/x SINE Alu -210 103 2 361 237 0 0 chr11 68176058 68176134 -82607419 - Tigger3(Golem) DNA MER2_type -2950 79 4 2160 124 3 0 chr11 68176464 68176770 -82606783 + AluSx SINE Alu 1 307 -5 1318 218 11 84 chr11 68176894 68177275 -82606278 + MLT1J LTR MaLR 157 509 -2 309 324 36 53 chr11 68178742 68178989 -82604564 + MLT1K LTR MaLR 251 493 -95 2687 108 8 0 chr11 68179176 68179548 -82604005 - THE1C LTR MaLR 0 375 1 2011 123 19 7 chr11 68179979 68180287 -82603266 + AluSx SINE Alu 1 312 0 270 232 0 0 chr11 68180750 68180806 -82602747 - MER103 DNA DNA -47 119 64 2275 85 0 13 chr11 68181092 68181398 -82602155 - AluSx SINE Alu -10 302 1 248 311 133 31 chr11 68181710 68181935 -82601618 - L2 LINE L2 0 3272 3025 2315 92 0 0 chr11 68182143 68182448 -82601105 - AluSx SINE Alu -7 305 1 846 186 48 0 chr11 68182448 68182615 -82600938 - AluSg/x SINE Alu -15 297 123 1955 131 13 7 chr11 68182630 68182936 -82600617 - AluSq SINE Alu -5 308 1 512 217 31 43 chr11 68182937 68183098 -82600455 - L1 LINE L1 -814 5332 5174 1406 157 16 69 chr11 68183101 68183419 -82600134 - AluJo SINE Alu -11 301 1 318 232 29 0 chr11 68183574 68183643 -82599910 + MLT1J LTR MaLR 111 181 -330 1822 112 0 19 chr11 68184233 68184492 -82599061 - AluSx SINE Alu -58 254 1 390 223 147 64 chr11 68185454 68185611 -82597942 - MER5B DNA MER1_type -4 174 5 1642 168 37 7 chr11 68185637 68185934 -82597619 - AluJb SINE Alu -6 306 1 2181 89 0 0 chr11 68185969 68186298 -82597255 + AluSg SINE Alu 1 329 0 254 133 111 0 chr11 68186495 68186540 -82597013 - L1M4 LINE L1 -2074 4072 4023 1201 178 0 0 chr11 68186542 68186744 -82596809 + AluJb SINE Alu 94 295 -17 2416 66 3 0 chr11 68186746 68187047 -82596506 + AluSp SINE Alu 1 302 -11 2313 231 35 19 chr11 68187054 68187302 -82596251 - L1M4 LINE L1 -2113 4033 3790 1972 135 7 7 chr11 68187302 68187606 -82595947 - AluJo SINE Alu -8 304 1 2313 231 35 19 chr11 68187606 68187977 -82595576 - L1M4 LINE L1 -2356 3790 3404 1156 89 42 0 chr11 68187977 68188145 -82595408 + MER30 DNA MER1_type 1 175 -55 805 254 51 0 chr11 68188517 68188714 -82594839 + MER20 DNA MER1_type 1 207 -12 331 237 23 130 chr11 68188733 68188864 -82594689 - L1ME4a LINE L1 -26 6095 5979 702 283 62 82 chr11 68190559 68190964 -82592589 - L1MC5 LINE L1 -32 7929 7542 1694 156 3 19 chr11 68190964 68191271 -82592282 - AluJo SINE Alu -10 302 1 702 283 62 82 chr11 68191271 68191548 -82592005 - L1MC5 LINE L1 -419 7542 7261 623 237 49 94 chr11 68191663 68192248 -82591305 + MLT1G LTR MaLR 3 568 -22 225 193 165 28 chr11 68192263 68192372 -82591181 - L1MC4 LINE L1 -793 7249 7126 2104 123 3 0 chr11 68193090 68193399 -82590154 - AluSx SINE Alu -2 310 1 319 358 17 39 chr11 68193402 68193581 -82589972 - MIR SINE MIR -6 256 82 326 302 56 40 chr11 68194351 68194477 -82589076 - MIR SINE MIR -78 184 57 226 278 65 19 chr11 68194563 68194671 -82588882 - L1ME4a LINE L1 -2 6119 6007 559 266 28 7 chr11 68194691 68194834 -82588719 - MER5A DNA MER1_type -1 188 43 991 211 14 24 chr11 68194862 68195070 -82588483 - MER20 DNA MER1_type -1 218 13 2347 96 0 0 chr11 68195087 68195399 -82588154 - AluSx SINE Alu 0 312 1 229 271 0 0 chr11 68195453 68195501 -82588052 + (CA)n Simple_repeat Simple_repeat 1 48 0 325 298 32 11 chr11 68195503 68195597 -82587956 - L1ME4a LINE L1 -162 5959 5864 496 169 114 133 chr11 68196530 68196587 -82586966 - MER63 DNA MER1_type -273 789 732 1926 120 14 3 chr11 68196587 68196879 -82586674 + AluSq SINE Alu 1 295 -18 496 169 114 133 chr11 68196879 68196987 -82586566 - MER63 DNA MER1_type -330 732 1 2325 90 3 0 chr11 68197571 68197882 -82585671 - AluSx SINE Alu 0 312 1 2295 95 3 0 chr11 68197882 68198187 -82585366 - AluSx SINE Alu -2 310 5 1890 133 0 20 chr11 68199397 68199691 -82583862 - AluJb SINE Alu -24 288 1 344 206 84 99 chr11 68199798 68199929 -82583624 - MLT1H LTR MaLR 0 549 414 398 246 201 10 chr11 68199959 68200158 -82583395 - MLT1H LTR MaLR -209 340 104 1955 228 75 30 chr11 68200792 68201367 -82582186 - L1ME3 LINE L1 -4 6158 5558 378 159 0 0 chr11 68201386 68201455 -82582098 + CT-rich Low_complexity Low_complexity 4 72 0 326 297 0 0 chr11 68201496 68201587 -82581966 - L1MDa LINE L1 -3969 2571 2481 2238 105 0 0 chr11 68202182 68202486 -82581067 - AluSx SINE Alu -8 304 1 448 320 170 25 chr11 68202721 68203080 -82580473 - HAL1 LINE L1 -940 1567 1157 1118 85 0 12 chr11 68203708 68203873 -82579680 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 588 111 0 0 chr11 68203874 68203964 -82579589 + (TTCC)n Simple_repeat Simple_repeat 4 93 0 800 159 0 0 chr11 68203964 68204096 -82579457 - AluJ SINE Alu 0 312 181 1032 179 0 31 chr11 68204276 68204472 -82579081 - AluJ SINE Alu -122 190 1 530 230 95 67 chr11 68204472 68204832 -82578721 + MLT1J1 LTR MaLR 29 409 0 286 255 21 20 chr11 68205009 68205137 -82578416 - L1ME3 LINE L1 -743 5408 5288 474 329 43 0 chr11 68205143 68205307 -82578246 + LTR67 LTR ERVL 97 267 -290 701 233 87 6 chr11 68205342 68205514 -82578039 + LTR67 LTR ERVL 359 544 -13 261 0 0 0 chr11 68205584 68205597 -82577956 + (TG)n Simple_repeat Simple_repeat 1 42 0 261 0 0 0 chr11 68205597 68205626 -82577927 + (TG)n Simple_repeat Simple_repeat 2 30 0 1473 139 41 16 chr11 68205744 68206021 -82577532 - AluSx SINE Alu 0 316 34 24 96 0 0 chr11 68206063 68206136 -82577417 + AT_rich Low_complexity Low_complexity 1 73 0 440 271 14 106 chr11 68206138 68206284 -82577269 - HAL1 LINE L1 -17 2490 2369 2280 115 0 0 chr11 68206284 68206597 -82576956 - AluSp SINE Alu 0 313 1 440 271 14 106 chr11 68206597 68206668 -82576885 - HAL1 LINE L1 -138 2369 2293 255 31 0 0 chr11 68206787 68206819 -82576734 + (TTTTC)n Simple_repeat Simple_repeat 1 32 0 1712 100 0 0 chr11 68206831 68207061 -82576492 - AluSx SINE Alu -82 230 1 1216 213 63 22 chr11 68207068 68207383 -82576170 - L1MA4 LINE L1 0 6300 5973 400 258 40 8 chr11 68207395 68207519 -82576034 - L1MC5 LINE L1 -491 7470 7343 770 215 0 7 chr11 68207519 68207668 -82575885 - MER58B DNA MER1_type -5 336 189 406 264 197 41 chr11 68209145 68209440 -82574113 + LTR16A1 LTR ERVL 99 439 -18 1206 345 72 18 chr11 68209550 68210426 -82573127 + HERV16 LTR ERVL 121 1057 -3939 1973 124 7 27 chr11 68210426 68210725 -82572828 - AluSx SINE Alu -18 294 2 1206 345 72 18 chr11 68210725 68210818 -82572735 + HERV16 LTR ERVL 1057 1143 -3853 848 180 79 0 chr11 68211108 68211286 -82572267 + LTR47A LTR ERVL 261 452 0 552 358 26 10 chr11 68211334 68211833 -82571720 + HERV16 LTR ERVL 1251 1820 -3176 1977 161 55 104 chr11 68211851 68211926 -82571627 - MLT1C LTR MaLR 0 467 390 2175 70 13 30 chr11 68211926 68212228 -82571325 + AluY SINE Alu 1 297 -14 1977 161 55 104 chr11 68212228 68212464 -82571089 - MLT1C LTR MaLR -77 390 186 1503 133 12 16 chr11 68212464 68212712 -82570841 - AluJo SINE Alu -17 295 49 1977 161 55 104 chr11 68212712 68212890 -82570663 - MLT1C LTR MaLR -281 186 1 959 261 62 23 chr11 68212942 68213295 -82570258 - LTR16B LTR ERVL -6 458 92 1070 296 39 60 chr11 68213378 68213800 -82569753 + HERV16 LTR ERVL 1920 2332 -2664 2311 61 27 3 chr11 68213800 68214093 -82569460 + AluY SINE Alu 1 300 -11 1070 296 39 60 chr11 68214093 68214156 -82569397 + HERV16 LTR ERVL 2332 2395 -2601 659 271 0 18 chr11 68214411 68214480 -82569073 - MIR SINE MIR -29 233 164 1926 157 3 0 chr11 68214480 68214786 -82568767 - AluSq SINE Alu -6 307 1 659 271 0 18 chr11 68214786 68214886 -82568667 - MIR SINE MIR -98 164 67 231 371 0 0 chr11 68215055 68215125 -82568428 + MIR3 SINE MIR 85 154 -54 204 342 9 45 chr11 68215220 68215331 -82568222 + L2 LINE L2 2696 2802 -512 333 250 22 22 chr11 68215358 68215450 -82568103 + L2 LINE L2 3222 3313 0 2074 73 25 7 chr11 68215461 68215761 -82567792 + AluSc SINE Alu 1 305 0 1484 120 0 14 chr11 68215761 68215816 -82567737 + AluSg/x SINE Alu 81 135 -177 2410 69 0 0 chr11 68215816 68216120 -82567433 + AluY SINE Alu 1 304 -7 1484 120 0 14 chr11 68216120 68216281 -82567272 + AluSg/x SINE Alu 135 294 -18 2093 110 14 0 chr11 68216541 68216831 -82566722 - AluSx SINE Alu -18 294 1 244 208 0 0 chr11 68221798 68221846 -82561707 + CT-rich Low_complexity Low_complexity 2 49 0 198 167 42 21 chr11 68222478 68222526 -82561027 + MIR SINE MIR 104 152 -56 300 282 92 25 chr11 68222821 68222984 -82560569 - L2 LINE L2 -189 3083 2910 1664 188 3 13 chr11 68223050 68223358 -82560195 - AluJo SINE Alu -7 305 1 1640 215 91 56 chr11 68223448 68223589 -82559964 + HsTC2 DNA Tc2 1274 1409 -489 2230 99 0 16 chr11 68223589 68223902 -82559651 - AluSx SINE Alu -4 308 1 1640 215 91 56 chr11 68223902 68224337 -82559216 + HsTC2 DNA Tc2 1409 1874 -24 1847 164 17 0 chr11 68224337 68224635 -82558918 - AluJb SINE Alu -9 303 1 1640 215 91 56 chr11 68224635 68224661 -82558892 + HsTC2 DNA Tc2 1874 1898 0 694 223 66 6 chr11 68224689 68224855 -82558698 - MIR SINE MIR -24 238 63 1905 153 0 10 chr11 68225086 68225398 -82558155 - AluSx SINE Alu 0 309 1 2271 90 3 3 chr11 68225437 68225748 -82557805 + AluSp SINE Alu 1 311 -2 2387 99 6 0 chr11 68225748 68226071 -82557482 + L1PA13 LINE L1 5828 6152 -11 962 176 28 63 chr11 68226098 68226382 -82557171 + AluSq SINE Alu 6 279 -34 342 0 0 0 chr11 68226399 68226437 -82557116 + (TG)n Simple_repeat Simple_repeat 1 38 0 392 334 0 0 chr11 68226437 68226556 -82556997 - L1MC4 LINE L1 -1339 6703 6614 * 414 246 5 14 chr11 68226512 68226627 -82556926 + L1MC4 LINE L1 1995 6977 -1345 1487 129 54 58 chr11 68226659 68226954 -82556599 - AluSq SINE Alu -8 305 12 39 22 0 0 chr11 68226974 68227020 -82556533 + AT_rich Low_complexity Low_complexity 1 46 0 1893 155 3 7 chr11 68227512 68227808 -82555745 + AluJb SINE Alu 1 295 -17 2389 88 0 0 chr11 68227812 68228119 -82555434 + AluSp SINE Alu 1 307 -6 1929 130 14 3 chr11 68228142 68228435 -82555118 + AluSx SINE Alu 3 298 -14 366 346 75 0 chr11 68228560 68228788 -82554765 - L1MC4 LINE L1 -1886 5922 5678 1088 89 0 0 chr11 68228821 68228956 -82554597 + AluSq/x SINE Alu 1 135 -177 2119 132 0 0 chr11 68228956 68229251 -82554302 + AluSx SINE Alu 1 295 -17 2244 93 6 10 chr11 68229447 68229760 -82553793 - AluSq SINE Alu -1 312 1 255 263 237 0 chr11 68230543 68230733 -82552820 + L2 LINE L2 2732 2966 -348 426 204 0 0 chr11 68230768 68230876 -82552677 + (CA)n Simple_repeat Simple_repeat 2 109 0 1949 155 0 3 chr11 68230936 68231240 -82552313 + AluJo SINE Alu 1 303 -9 660 275 22 54 chr11 68231417 68231517 -82552036 - MIR SINE MIR -7 255 153 2119 61 48 30 chr11 68231517 68231812 -82551741 + AluY SINE Alu 1 300 -11 660 275 22 54 chr11 68231812 68231933 -82551620 - MIR SINE MIR -109 153 41 227 225 14 28 chr11 68232069 68232140 -82551413 + C-rich Low_complexity Low_complexity 3 72 0 186 43 0 0 chr11 68232296 68232319 -82551234 + (A)n Simple_repeat Simple_repeat 1 23 0 2455 66 0 0 chr11 68232406 68232708 -82550845 - AluY SINE Alu -9 302 1 751 165 0 38 chr11 68232951 68233084 -82550469 - FLAM_C SINE Alu -5 128 1 2167 99 10 0 chr11 68233148 68233440 -82550113 - AluSx SINE Alu -17 295 1 466 251 51 64 chr11 68233528 68233763 -82549790 - MER102a DNA MER1_type -3 327 96 1783 153 38 0 chr11 68233777 68234064 -82549489 + AluJb SINE Alu 1 298 -14 2021 111 0 10 chr11 68234207 68234495 -82549058 - AluSx SINE Alu -27 285 1 2160 100 3 0 chr11 68234536 68234836 -82548717 + AluSp SINE Alu 1 301 -12 188 235 0 39 chr11 68235218 68235269 -82548284 - MIR SINE MIR -194 68 20 858 111 0 0 chr11 68235343 68235460 -82548093 + FRAM SINE Alu 35 151 -25 2282 71 3 3 chr11 68235469 68235764 -82547789 + AluSx SINE Alu 1 295 -17 27 29 0 0 chr11 68235768 68235802 -82547751 + AT_rich Low_complexity Low_complexity 1 34 0 239 259 117 32 chr11 68236088 68236198 -82547355 - MIR SINE MIR -45 163 42 435 297 136 37 chr11 68236720 68237175 -82546378 + MLT1K LTR MaLR 65 564 -24 420 204 0 0 chr11 68237266 68237354 -82546199 - Tigger5 DNA MER2_type -2235 88 1 374 235 0 0 chr11 68237367 68237452 -82546101 + Tigger5 DNA MER2_type 2239 2323 0 2457 50 7 0 chr11 68238774 68239077 -82544476 - AluSg SINE Alu -5 305 1 2239 90 10 6 chr11 68240580 68240891 -82542662 - AluSx SINE Alu 0 312 1 195 42 0 0 chr11 68241615 68241639 -82541914 + (CAGCC)n Simple_repeat Simple_repeat 4 27 0 2348 82 0 0 chr11 68242289 68242583 -82540970 + AluSp SINE Alu 1 294 -19 943 179 0 0 chr11 68242585 68242741 -82540812 + AluJo/FRAM SINE Alu 132 287 -25 39 0 0 0 chr11 68242742 68242781 -82540772 + AT_rich Low_complexity Low_complexity 1 39 0 197 243 0 100 chr11 68242808 68242878 -82540675 + L2 LINE L2 3251 3313 0 328 350 100 23 chr11 68243163 68243394 -82540159 - L2 LINE L2 -296 3017 2772 2259 97 0 0 chr11 68243431 68243730 -82539823 + AluSc SINE Alu 1 299 -10 2260 110 0 0 chr11 68243841 68244142 -82539411 - AluSx SINE Alu -11 301 1 317 258 52 0 chr11 68244715 68244812 -82538741 + MLT1K LTR MaLR 2 103 -485 * 413 231 183 86 chr11 68244808 68244846 -82538707 + MLT1K LTR MaLR 246 279 -309 2097 107 0 44 chr11 68244846 68245164 -82538389 + AluSq SINE Alu 1 304 -9 413 231 183 86 chr11 68245164 68245392 -82538161 + MLT1K LTR MaLR 279 538 -50 465 295 30 98 chr11 68245392 68245860 -82537693 + MLT1J LTR MaLR 1 436 -75 2046 125 16 7 chr11 68246107 68246412 -82537141 + AluSg SINE Alu 1 308 -2 212 361 41 0 chr11 68246647 68246744 -82536809 + MIR SINE MIR 162 262 0 505 285 91 27 chr11 68246798 68246928 -82536625 + MIR SINE MIR 23 170 -92 2107 119 0 0 chr11 68246928 68247221 -82536332 + AluSx SINE Alu 1 293 -19 505 285 91 27 chr11 68247221 68247276 -82536277 + MIR SINE MIR 170 220 -42 278 349 123 0 chr11 68247558 68247704 -82535849 + MIR3 SINE MIR 45 208 0 22 80 0 0 chr11 68250665 68250715 -82532838 + GC_rich Low_complexity Low_complexity 1 50 0 265 304 39 49 chr11 68253007 68253211 -82530342 + L2 LINE L2 2945 3146 -167 1819 128 7 0 chr11 68253303 68253577 -82529976 - AluSx SINE Alu -3 309 34 756 201 36 71 chr11 68253577 68253612 -82529941 + Charlie5 DNA MER1_type 2370 2405 -219 1731 74 114 52 chr11 68253612 68253883 -82529670 + AluSx SINE Alu 11 298 -14 756 201 36 71 chr11 68253883 68254071 -82529482 + Charlie5 DNA MER1_type 2405 2624 0 240 243 157 0 chr11 68254130 68254200 -82529353 + L2 LINE L2 3233 3313 0 259 351 6 11 chr11 68255043 68255217 -82528336 + G-rich Low_complexity Low_complexity 3 175 0 375 333 55 16 chr11 68255305 68255488 -82528065 + MIR3 SINE MIR 4 193 -15 22 80 0 0 chr11 68255809 68255859 -82527694 + GC_rich Low_complexity Low_complexity 1 50 0 2057 105 0 43 chr11 68259015 68259190 -82524363 - AluSx SINE Alu -13 299 118 2061 102 0 55 chr11 68259190 68259515 -82524038 - AluY SINE Alu -4 307 1 989 74 0 0 chr11 68259515 68259637 -82523916 - AluSq/x SINE Alu -176 136 15 217 228 0 18 chr11 68260370 68260427 -82523126 + (CACCC)n Simple_repeat Simple_repeat 1 56 0 236 307 168 0 chr11 68260627 68260728 -82522825 + MIR SINE MIR 30 147 -61 223 262 33 0 chr11 68260831 68260892 -82522661 + MIR3 SINE MIR 92 154 -54 22 0 0 0 chr11 68261954 68261976 -82521577 + GC_rich Low_complexity Low_complexity 1 22 0 226 186 0 70 chr11 68262045 68262131 -82521422 + (CGGG)n Simple_repeat Simple_repeat 2 81 0 1824 126 4 0 chr11 68264194 68264457 -82519096 - AluSx SINE Alu -11 301 38 2138 98 0 26 chr11 68264535 68264841 -82518712 + AluSx SINE Alu 1 298 -14 2375 54 14 0 chr11 68264841 68265135 -82518418 + AluY SINE Alu 1 298 -13 2175 113 13 0 chr11 68265135 68265444 -82518109 + AluSq SINE Alu 1 313 0 2197 84 3 13 chr11 68265455 68265754 -82517799 + AluSg SINE Alu 2 297 -13 24 0 0 0 chr11 68265931 68265955 -82517598 + AT_rich Low_complexity Low_complexity 1 24 0 2085 122 0 3 chr11 68265955 68266258 -82517295 + AluSg SINE Alu 1 302 -8 594 221 197 29 chr11 68266260 68266468 -82517085 - MIR SINE MIR -18 244 2 2291 74 7 0 chr11 68266541 68266837 -82516716 - AluY SINE Alu -13 298 1 2192 102 0 7 chr11 68266840 68267145 -82516408 - AluSq SINE Alu -10 303 1 416 248 155 37 chr11 68267328 68267489 -82516064 - MIR SINE MIR -16 246 67 257 344 11 0 chr11 68267524 68267617 -82515936 - L2 LINE L2 -38 3275 3182 2140 72 0 0 chr11 68267709 68267986 -82515567 - AluSg SINE Alu -9 301 25 2034 99 32 0 chr11 68267996 68268279 -82515274 - AluSg SINE Alu -18 292 1 1321 91 0 0 chr11 68268279 68268454 -82515099 - AluSp SINE Alu -5 308 134 2347 78 0 0 chr11 68268454 68268748 -82514805 - AluSx SINE Alu -18 294 1 1388 254 230 28 chr11 68268885 68269991 -82513562 - L2 LINE L2 -27 3286 1888 256 281 12 12 chr11 68270847 68270929 -82512624 + L3 LINE CR1 1371 1452 -125 285 342 18 9 chr11 68271654 68271768 -82511785 - MIR SINE MIR -62 146 32 2003 102 13 38 chr11 68274904 68275217 -82508336 - AluSx SINE Alu -7 305 1 2199 97 0 7 chr11 68276306 68276615 -82506938 + AluSg1 SINE Alu 1 307 -2 247 269 90 0 chr11 68276694 68276772 -82506781 - L2 LINE L2 -31 3241 3157 2169 93 10 3 chr11 68278276 68278577 -82504976 - AluSx SINE Alu -9 303 1 2127 120 0 13 chr11 68280820 68281136 -82502417 + AluSx SINE Alu 1 312 0 1153 131 45 0 chr11 68281326 68281524 -82502029 - LTR23 LTR ERV1 0 437 231 1212 195 78 28 chr11 68281528 68281645 -82501908 + AluJo SINE Alu 1 111 -201 288 53 0 0 chr11 68281645 68281683 -82501870 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1212 195 78 28 chr11 68281683 68281847 -82501706 + AluJo SINE Alu 111 296 -16 2310 84 3 10 chr11 68281849 68282160 -82501393 + AluSp SINE Alu 1 309 -4 1218 169 0 10 chr11 68282176 68282383 -82501170 + AluJo SINE Alu 100 304 -8 2065 98 4 4 chr11 68282418 68282694 -82500859 + AluSx SINE Alu 1 276 -36 1542 163 62 10 chr11 68282843 68283132 -82500421 - AluJo SINE Alu -8 304 1 1145 359 49 4 chr11 68283206 68283956 -82499597 + HERV16 LTR ERVL 2605 3470 -2091 1701 346 62 23 chr11 68284148 68284349 -82499204 + HERV16 LTR ERVL 3680 3872 -1782 2171 104 3 0 chr11 68284349 68284648 -82498905 + AluSx SINE Alu 1 300 -12 1701 346 62 23 chr11 68284648 68285287 -82498266 + HERV16 LTR ERVL 3872 4553 -1101 612 319 60 25 chr11 68285423 68285708 -82497845 + HERV16 LTR ERVL 4774 5068 -696 256 262 10 58 chr11 68285750 68285853 -82497700 + HERV16 LTR ERVL 5182 5279 -485 868 268 54 44 chr11 68286060 68286470 -82497083 + LTR16A1 LTR ERVL 1 414 -43 945 196 41 5 chr11 68286471 68286691 -82496862 + L1MB5 LINE L1 5947 6174 0 249 375 16 8 chr11 68287451 68287579 -82495974 + L2 LINE L2 3141 3269 -3 2226 154 15 12 chr11 68287631 68287859 -82495694 - L1MB3 LINE L1 -7 6176 5949 625 284 59 78 chr11 68287859 68288075 -82495478 - L1ME2 LINE L1 -218 5946 5728 1905 147 0 3 chr11 68288075 68288404 -82495149 - AluJb SINE Alu 0 328 1 625 284 59 78 chr11 68288404 68289144 -82494409 - L1ME2 LINE L1 -436 5728 5008 252 269 54 35 chr11 68289185 68289352 -82494201 - LTR16C LTR ERVL -10 481 227 2054 303 52 33 chr11 68289664 68290313 -82493240 - L1ME2 LINE L1 -1317 4829 4194 2437 177 24 56 chr11 68290313 68290523 -82493030 - MER66B LTR ERV1 0 486 271 261 0 0 0 chr11 68290523 68290552 -82493001 + (CAGGG)n Simple_repeat Simple_repeat 1 29 0 2437 177 24 56 chr11 68290552 68290575 -82492978 - MER66B LTR ERV1 -215 271 249 1993 109 50 0 chr11 68290575 68290858 -82492695 - AluSx SINE Alu -15 297 1 2437 177 24 56 chr11 68290858 68291125 -82492428 - MER66B LTR ERV1 -237 249 1 2054 303 52 33 chr11 68291125 68291359 -82492194 - L1ME2 LINE L1 -1952 4194 3966 1876 148 13 3 chr11 68291359 68291664 -82491889 - AluJb SINE Alu -4 308 1 2054 303 52 33 chr11 68291664 68292210 -82491343 - L1ME2 LINE L1 -2180 3966 3183 2275 97 7 0 chr11 68292771 68293079 -82490474 - AluSx SINE Alu -2 310 1 376 329 56 50 chr11 68293080 68293476 -82490077 - L1ME2 LINE L1 -3004 3142 2750 2118 128 0 3 chr11 68293476 68293789 -82489764 - AluSx SINE Alu 0 312 1 376 329 56 50 chr11 68293789 68294219 -82489334 - L1ME2 LINE L1 -3396 2750 2311 564 278 134 17 chr11 68294226 68294517 -82489036 + MLT1J LTR MaLR 10 334 -177 2144 106 3 3 chr11 68294614 68294916 -82488637 - AluSp SINE Alu -11 302 1 1274 134 9 43 chr11 68294976 68295208 -82488345 - AluJb SINE Alu -2 310 87 2612 236 81 40 chr11 68295283 68295559 -82487994 + MER21B LTR ERV1 18 281 -582 1773 148 48 0 chr11 68295559 68295850 -82487703 + AluSx SINE Alu 1 305 -7 2612 236 81 40 chr11 68295850 68296327 -82487226 + MER21B LTR ERV1 281 802 -61 2048 107 0 0 chr11 68296348 68296620 -82486933 + AluSc SINE Alu 1 272 -37 291 28 0 0 chr11 68296624 68296660 -82486893 + (CAA)n Simple_repeat Simple_repeat 2 37 0 769 216 6 6 chr11 68296672 68296839 -82486714 - ERVL LTR ERVL -1848 3916 3750 1659 185 31 0 chr11 68296909 68297195 -82486358 - AluJb SINE Alu -17 295 1 2033 177 124 7 chr11 68297723 68298141 -82485412 + MLT1C LTR MaLR 1 467 0 436 277 27 7 chr11 68298899 68299047 -82484506 - HAL1b LINE L1 0 1348 1198 207 214 0 0 chr11 68299116 68299158 -82484395 + T-rich Low_complexity Low_complexity 1 42 0 451 290 47 31 chr11 68299513 68299706 -82483847 - L1ME LINE L1 -459 5662 5467 23 0 0 0 chr11 68299818 68299841 -82483712 + AT_rich Low_complexity Low_complexity 1 23 0 485 264 102 37 chr11 68300012 68300307 -82483246 - L1ME4a LINE L1 -215 5906 5593 2231 104 13 0 chr11 68300312 68300621 -82482932 - AluSp SINE Alu 0 313 1 988 181 11 0 chr11 68300966 68301143 -82482410 - MLT1B LTR MaLR 0 390 212 511 196 113 84 chr11 68301144 68301624 -82481929 + MER66B LTR ERV1 97 478 0 1030 165 15 15 chr11 68301653 68301853 -82481700 - MLT1B LTR MaLR -190 200 1 2272 99 0 3 chr11 68301883 68302187 -82481366 + AluSx SINE Alu 1 303 -9 1153 237 78 82 chr11 68303660 68304124 -82479429 - MLT1C LTR MaLR 0 467 6 1575 114 4 13 chr11 68304157 68304393 -82479160 + AluSc SINE Alu 1 234 -75 1594 129 122 4 chr11 68304484 68304755 -82478798 + AluJo SINE Alu 1 303 -9 269 254 16 0 chr11 68305633 68305696 -82477857 + MIR SINE MIR 199 262 0 515 209 63 89 chr11 68306207 68306251 -82477302 - LTR16A1 LTR ERVL 0 457 413 2053 134 0 0 chr11 68306251 68306550 -82477003 - AluSx SINE Alu -13 299 1 515 209 63 89 chr11 68306550 68306696 -82476857 - LTR16A1 LTR ERVL -44 413 272 1581 189 7 113 chr11 68307086 68307494 -82476059 - MLT1A1 LTR MaLR 0 365 1 2064 145 3 0 chr11 68307531 68307841 -82475712 - AluSp SINE Alu -2 311 1 3180 220 53 48 chr11 68308064 68308615 -82474938 - L1ME2 LINE L1 -4 6180 5633 1616 180 28 0 chr11 68308615 68308904 -82474649 - AluJo SINE Alu -15 297 1 3180 220 53 48 chr11 68308904 68309559 -82473994 - L1ME2 LINE L1 -551 5633 4983 2236 96 7 0 chr11 68309559 68309861 -82473692 - AluSx SINE Alu -8 304 1 3180 220 53 48 chr11 68309861 68310363 -82473190 - L1ME2 LINE L1 -1201 4983 4270 478 297 16 0 chr11 68310858 68310986 -82472567 + MER20B DNA MER1_type 310 439 -344 720 212 0 0 chr11 68311126 68311258 -82472295 + AluJo SINE Alu 5 136 -176 2114 142 3 10 chr11 68311267 68311570 -82471983 + AluJo SINE Alu 12 312 0 297 288 103 45 chr11 68311575 68311818 -82471735 - MER20B DNA MER1_type -489 294 38 469 230 0 0 chr11 68311921 68312008 -82471545 - MER41A LTR ERV1 0 554 468 1157 174 90 114 chr11 68312016 68312470 -82471083 - LTR7 LTR ERV1 -7 443 1 * 3508 136 6 0 chr11 68312470 68313012 -82470541 - MER41B LTR ERV1 -88 547 3 243 301 96 44 chr11 68313027 68313256 -82470297 + L2 LINE L2 1601 1841 -1473 2000 122 7 17 chr11 68314023 68314317 -82469236 - AluSq SINE Alu -22 291 1 744 120 26 0 chr11 68314673 68314790 -82468763 - MLT2B2 LTR ERVL -8 507 388 205 369 94 7 chr11 68314881 68315030 -82468523 + L2 LINE L2 3107 3268 -4 445 255 195 0 chr11 68315370 68315519 -82468034 + MER45A DNA AcHobo 1 178 0 1810 244 81 55 chr11 68316042 68316127 -82467426 - MER82 DNA MER2_type -6 647 566 2274 102 0 13 chr11 68316127 68316430 -82467123 - AluY SINE Alu -12 299 1 1810 244 81 55 chr11 68316430 68316842 -82466711 - MER82 DNA MER2_type -87 566 128 2383 108 0 0 chr11 68316842 68317147 -82466406 + AluSx SINE Alu 1 305 -7 1810 244 81 55 chr11 68317147 68317279 -82466274 - MER82 DNA MER2_type -525 128 1 243 189 38 0 chr11 68317394 68317447 -82466106 + MLT1A2 LTR MaLR 1 55 -319 513 294 88 100 chr11 68319214 68319424 -82464129 - L1MEc LINE L1 -3003 3212 3001 216 0 0 0 chr11 68319424 68319448 -82464105 + (TTA)n Simple_repeat Simple_repeat 1 24 0 513 294 88 100 chr11 68319448 68319625 -82463928 - L1MEc LINE L1 -3214 3001 2823 2225 117 3 25 chr11 68319625 68319942 -82463611 + AluSx SINE Alu 1 310 -2 513 294 88 100 chr11 68319942 68320189 -82463364 - L1MEc LINE L1 -3392 2823 2575 2058 143 3 0 chr11 68320189 68320483 -82463070 - AluSx SINE Alu -17 295 1 513 294 88 100 chr11 68320483 68320522 -82463031 - L1MEc LINE L1 -3640 2575 2537 1553 114 26 9 chr11 68320522 68320750 -82462803 - AluSg/x SINE Alu 0 312 81 513 294 88 100 chr11 68320750 68321254 -82462299 - L1MEc LINE L1 -3678 2537 1858 834 174 0 0 chr11 68321357 68321489 -82462064 + FLAM_C SINE Alu 1 132 -1 5549 208 68 21 chr11 68321536 68322909 -82460644 - L1MC4 LINE L1 -147 7895 6458 4246 151 59 44 chr11 68323105 68323649 -82459904 - MER21B LTR ERV1 -3 860 297 2476 103 0 8 chr11 68323649 68324007 -82459546 - L1PB1 LINE L1 -1 6150 5796 4246 151 59 44 chr11 68324007 68324309 -82459244 - MER21B LTR ERV1 -566 297 1 2036 129 10 19 chr11 68324448 68324757 -82458796 + AluJb SINE Alu 1 306 -6 2042 118 3 17 chr11 68324871 68325032 -82458521 - AluSc SINE Alu -17 292 135 2463 74 0 3 chr11 68325032 68325331 -82458222 - AluY SINE Alu -13 298 1 2042 118 3 17 chr11 68325331 68325465 -82458088 - AluSc SINE Alu -174 135 1 2015 142 0 0 chr11 68325494 68325813 -82457740 + AluSx SINE Alu 1 319 0 256 259 82 78 chr11 68325977 68326354 -82457199 + L1MDb LINE L1 1108 1488 -4908 604 210 151 0 chr11 68326907 68327112 -82456441 - MER20B DNA MER1_type -6 777 542 325 249 47 67 chr11 68327104 68327297 -82456256 - MER20B DNA MER1_type -363 420 232 * 386 303 61 36 chr11 68327388 68327553 -82456000 - MER20B DNA MER1_type -572 211 43 197 234 0 78 chr11 68327960 68328024 -82455529 - L2 LINE L2 -96 3217 3159 2580 149 94 16 chr11 68328633 68329123 -82454430 - MER1A DNA MER1_type -1 528 1 1881 164 0 7 chr11 68329299 68329598 -82453955 - AluJo SINE Alu -15 297 1 903 285 46 80 chr11 68329705 68330203 -82453350 + L2 LINE L2 2832 3312 -1 1033 218 97 0 chr11 68330218 68330434 -82453119 - MIR SINE MIR -8 254 18 481 234 6 27 chr11 68330783 68331196 -82452357 + (TCTCTG)n Simple_repeat Simple_repeat 1 404 0 344 121 17 0 chr11 68331201 68331259 -82452294 - MLT2B1 LTR ERVL 0 520 462 2551 185 17 30 chr11 68331299 68331840 -82451713 - MLT2B3 LTR ERVL -20 534 1 541 230 16 37 chr11 68331897 68332108 -82451445 - MLT2B1 LTR ERVL -60 460 253 1763 198 71 7 chr11 68332116 68332529 -82451024 - MLT2B1 LTR ERVL -118 436 1 518 306 58 0 chr11 68332850 68333023 -82450530 - L2 LINE L2 -646 2668 2486 1734 228 44 9 chr11 68333117 68333547 -82450006 + MER70B LTR ERVL 1 445 -133 350 296 63 7 chr11 68333562 68333704 -82449849 - LTR16A1 LTR ERVL -99 358 209 466 316 96 33 chr11 68333777 68334049 -82449504 - L2 LINE L2 -831 2483 2195 311 321 38 0 chr11 68334057 68334188 -82449365 + L2 LINE L2 2930 3065 -207 285 148 0 74 chr11 68334602 68334656 -82448897 - 5S rRNA rRNA -71 50 1 352 241 0 0 chr11 68335111 68335194 -82448359 - Charlie2a DNA MER1_type -2018 844 762 1929 180 52 0 chr11 68335258 68335642 -82447911 - L1MB3 LINE L1 0 6183 5780 1616 241 55 34 chr11 68335644 68335779 -82447774 + MER74A LTR ERVL 1 132 -426 2313 39 0 3 chr11 68335779 68336061 -82447492 - L1PA4 LINE L1 -1 6154 5874 1616 241 55 34 chr11 68336061 68336455 -82447098 + MER74A LTR ERVL 132 541 -17 359 169 0 0 chr11 68336472 68336537 -82447016 - L1MB3 LINE L1 -403 5780 5716 2412 88 0 25 chr11 68336594 68336912 -82446641 + AluY SINE Alu 1 310 -1 1190 129 0 0 chr11 68336912 68337075 -82446478 + AluSg/x SINE Alu 128 290 -22 242 56 28 0 chr11 68337075 68337111 -82446442 + (GGA)n Simple_repeat Simple_repeat 1 37 0 3746 143 64 48 chr11 68337261 68337604 -82445949 - LTR39 LTR ERV1 0 783 447 2334 76 7 0 chr11 68337604 68337918 -82445635 + AluSp SINE Alu 1 316 0 3746 143 64 48 chr11 68337918 68338334 -82445219 - LTR39 LTR ERV1 -336 447 9 511 318 120 10 chr11 68338399 68338792 -82444761 - L1ME3A LINE L1 -214 5956 5521 273 310 11 0 chr11 68340608 68340695 -82442858 + MIR3 SINE MIR 98 185 -23 1953 159 10 0 chr11 68340728 68341029 -82442524 + AluJo SINE Alu 1 304 -8 522 233 33 44 chr11 68341086 68341266 -82442287 - L1M4 LINE L1 -3109 3037 2860 234 228 18 0 chr11 68341443 68341500 -82442053 + (TA)n Simple_repeat Simple_repeat 2 59 0 1058 275 66 27 chr11 68341555 68342039 -82441514 - L1MC4a LINE L1 -1934 5874 5372 2067 211 79 131 chr11 68342047 68342664 -82440889 + L1MD3 LINE L1 6736 7383 -612 195 100 0 0 chr11 68342664 68342694 -82440859 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2067 211 79 131 chr11 68342694 68342764 -82440789 + L1MD3 LINE L1 7383 7455 -540 455 132 26 0 chr11 68342764 68342840 -82440713 + MLT1F1 LTR MaLR 54 131 -436 2067 211 79 131 chr11 68342840 68343405 -82440148 + L1MD3 LINE L1 7455 7995 0 557 269 109 55 chr11 68343405 68343588 -82439965 - L1MC4a LINE L1 -774 5372 5161 1695 171 45 11 chr11 68343588 68343874 -82439679 - AluJb SINE Alu -16 296 1 557 269 109 55 chr11 68343874 68344015 -82439538 - L1MC4a LINE L1 -985 5161 5029 1708 186 284 8 chr11 68344088 68344711 -82438842 - LTR50 LTR ERVL 0 795 1 336 307 24 8 chr11 68344927 68345054 -82438499 + LTR16C LTR ERVL 363 491 0 310 260 33 95 chr11 68345071 68345313 -82438240 + L1MEd LINE L1 792 1018 -5101 516 242 117 52 chr11 68345336 68345567 -82437986 - LTR16C LTR ERVL -113 378 133 1945 151 0 20 chr11 68345776 68346081 -82437472 + AluJb SINE Alu 1 299 -13 410 309 13 43 chr11 68346088 68346321 -82437232 - HERVL LTR ERVL -296 5358 5133 2069 322 112 66 chr11 68346446 68348372 -82435181 - HERVL LTR ERVL -815 4949 3114 1725 178 20 3 chr11 68348372 68348665 -82434888 - AluJo SINE Alu -14 298 1 258 143 122 0 chr11 68348675 68348724 -82434829 - FLAM_A SINE Alu -9 124 70 2069 322 112 66 chr11 68348724 68349278 -82434275 - HERVL LTR ERVL -2658 3106 2292 854 351 49 33 chr11 68349279 68349799 -82433754 - HERVL LTR ERVL -3425 1571 1523 2428 93 0 0 chr11 68349799 68350101 -82433452 - AluSc SINE Alu -7 302 1 854 351 49 33 chr11 68350101 68350670 -82432883 - HERVL LTR ERVL -3473 1523 965 547 282 112 24 chr11 68350890 68351184 -82432369 - L1MEd LINE L1 -5734 385 66 24 32 0 0 chr11 68351547 68351578 -82431975 + AT_rich Low_complexity Low_complexity 1 31 0 3747 186 66 4 chr11 68352602 68353362 -82430191 + MER21B LTR ERV1 12 818 -45 805 175 44 0 chr11 68353435 68353595 -82429958 - MLT1D LTR MaLR 0 505 339 505 210 101 0 chr11 68353678 68353816 -82429737 - MLT1D LTR MaLR -315 190 39 339 275 75 0 chr11 68354352 68354512 -82429041 + L2 LINE L2 2891 3062 -210 293 221 15 0 chr11 68354942 68355010 -82428543 + L1MC4a LINE L1 5567 5635 -535 1290 205 100 44 chr11 68355029 68355370 -82428183 + MER93b LTR ERV1 7 366 -7 983 239 62 67 chr11 68355507 68355897 -82427656 + MER21B LTR ERV1 326 713 -150 820 208 36 0 chr11 68356600 68356768 -82426785 + L1MB1 LINE L1 5990 6163 -5 2086 116 3 3 chr11 68356831 68357138 -82426415 - AluJb SINE Alu 0 307 1 215 170 0 19 chr11 68357619 68357672 -82425881 + CT-rich Low_complexity Low_complexity 3 54 0 1071 151 28 19 chr11 68358496 68358708 -82424845 + MLT1D LTR MaLR 1 214 -291 587 254 42 10 chr11 68358744 68358937 -82424616 + MLT1D LTR MaLR 307 505 0 398 236 9 0 chr11 68359403 68359509 -82424044 - LTR33 LTR ERVL -413 108 2 534 276 0 0 chr11 68359583 68359699 -82423854 + MIR SINE MIR 7 122 -140 1842 208 31 13 chr11 68360487 68360876 -82422677 - MSTD LTR MaLR 0 396 1 262 250 17 0 chr11 68361272 68361332 -82422221 + Charlie7 DNA MER1_type 41 101 -2511 216 277 0 36 chr11 68361490 68361562 -82421991 - L2 LINE L2 0 3293 3203 343 320 16 0 chr11 68361911 68362033 -82421520 + L1MC4a LINE L1 5768 5891 -1917 248 313 148 17 chr11 68362330 68362506 -82421047 - MIR3 SINE MIR -32 176 29 205 139 0 0 chr11 68363567 68363603 -82419950 - L2 LINE L2 0 3313 3278 553 163 10 0 chr11 68363687 68363785 -82419768 + MER51A LTR ERV1 455 553 -81 373 200 87 0 chr11 68364061 68364176 -82419377 - LTR16A LTR ERVL -93 357 233 308 318 164 21 chr11 68364264 68364369 -82419184 + L2 LINE L2 2983 3072 -241 1602 97 4 9 chr11 68364369 68364595 -82418958 - AluSg/x SINE Alu 0 310 86 308 318 164 21 chr11 68364595 68364769 -82418784 + L2 LINE L2 3072 3302 -11 183 42 0 0 chr11 68364770 68364794 -82418759 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 903 233 82 31 chr11 68364885 68365237 -82418316 + L1M4 LINE L1 4196 4565 -1581 542 205 36 96 chr11 68365496 68365576 -82417977 + MIR SINE MIR 18 84 -178 1531 142 58 44 chr11 68365576 68365871 -82417682 - AluJo SINE Alu -11 301 3 542 205 36 96 chr11 68365871 68365956 -82417597 + MIR SINE MIR 84 173 -89 1305 239 42 32 chr11 68366043 68366300 -82417253 - MER89 LTR ERV1 -2 557 293 2189 126 0 3 chr11 68366300 68366610 -82416943 - AluSc SINE Alu 0 309 1 1305 239 42 32 chr11 68366610 68366732 -82416821 - MER89 LTR ERV1 -266 293 174 224 288 0 17 chr11 68367095 68367154 -82416399 + MIR SINE MIR 21 78 -184 924 135 0 0 chr11 68367766 68367899 -82415654 - FLAM_C SINE Alu 0 133 1 868 267 51 10 chr11 68367975 68368271 -82415282 - MER113 DNA MER1_type? -213 308 1 678 260 58 10 chr11 68368405 68368613 -82414940 - MIR SINE MIR -22 240 23 2916 157 19 60 chr11 68369717 68369835 -82413718 - MER41D LTR ERV1 -10 547 426 2186 106 3 6 chr11 68369835 68370147 -82413406 + AluSx SINE Alu 1 311 -1 2916 157 19 60 chr11 68370147 68370596 -82412957 - MER41D LTR ERV1 -131 426 3 663 204 97 38 chr11 68371304 68371490 -82412063 - MIR SINE MIR -5 257 61 215 331 113 14 chr11 68371516 68371658 -82411895 + L2 LINE L2 3117 3272 0 1717 160 22 22 chr11 68371664 68371976 -82411577 + AluJo SINE Alu 1 312 0 323 320 113 11 chr11 68371978 68372287 -82411266 + L1MC4a LINE L1 880 3200 -1206 507 306 60 104 chr11 68372471 68372856 -82410697 - HAL1 LINE L1 -1321 1186 819 200 373 119 15 chr11 68373991 68374125 -82409428 - L2 LINE L2 -2 3270 3123 574 213 161 7 chr11 68374208 68374363 -82409190 - MER5A DNA MER1_type -7 182 4 1830 104 12 0 chr11 68375258 68375508 -82408045 - AluSx SINE Alu -56 256 4 195 259 19 0 chr11 68375701 68375755 -82407798 + L2 LINE L2 2921 2975 -338 223 314 14 0 chr11 68375928 68375998 -82407555 + L2 LINE L2 3233 3303 -10 181 261 22 0 chr11 68376090 68376136 -82407417 + MIR SINE MIR 77 123 -85 775 261 46 15 chr11 68376285 68376587 -82406966 - LTR16C LTR ERVL -4 487 107 28 48 0 0 chr11 68376970 68377012 -82406541 + AT_rich Low_complexity Low_complexity 1 42 0 251 288 0 0 chr11 68377074 68377154 -82406399 - L1M4 LINE L1 -2263 3883 3804 511 106 0 0 chr11 68377243 68377309 -82406244 + AluS SINE Alu 2 67 -246 364 284 7 14 chr11 68377344 68377485 -82406068 + L1MC4a LINE L1 3816 3955 -2191 1319 134 0 0 chr11 68377648 68377835 -82405718 + AluJo SINE Alu 1 187 -125 263 139 0 4 chr11 68377838 68377882 -82405671 - FRAM/FAM SINE Alu -129 46 10 779 145 16 0 chr11 68377894 68378018 -82405535 + FRAM SINE Alu 1 40 0 859 301 106 10 chr11 68378019 68378435 -82405118 + L1MC4a LINE L1 5254 5709 -2099 22 0 0 0 chr11 68378435 68378457 -82405096 + AT_rich Low_complexity Low_complexity 1 22 0 4801 123 8 13 chr11 68378457 68378829 -82404724 - L1PA14 LINE L1 -3 6158 5786 2507 46 0 3 chr11 68378829 68379135 -82404418 - AluY SINE Alu -6 305 1 4801 123 8 13 chr11 68379135 68379543 -82404010 - L1PA14 LINE L1 -375 5786 5382 256 319 0 59 chr11 68379551 68379579 -82403974 + L1MC4a LINE L1 5706 5734 -387 1958 132 23 0 chr11 68379579 68379883 -82403670 + AluSx SINE Alu 1 311 -1 256 319 0 59 chr11 68379883 68379973 -82403580 + L1MC4a LINE L1 5734 5817 -304 232 275 92 15 chr11 68380034 68380165 -82403388 + L1MC4a LINE L1 5913 6053 -1755 957 168 0 0 chr11 68381270 68381449 -82402104 + (TGG)n Simple_repeat Simple_repeat 1 179 0 659 182 20 0 chr11 68381422 68381570 -82401983 + (ATGGTG)n Simple_repeat Simple_repeat 3 153 0 * 184 350 0 0 chr11 68381631 68381691 -82401862 - MIR SINE MIR -62 146 87 209 292 143 36 chr11 68382244 68382412 -82401141 + MER5A DNA MER1_type 1 186 -3 315 336 54 7 chr11 68383083 68383232 -82400321 + MIR SINE MIR 85 240 -22 1512 131 56 8 chr11 68385009 68385276 -82398277 - MER31A LTR ERV1 -205 280 1 492 301 20 0 chr11 68385484 68385637 -82397916 - MIR SINE MIR -80 182 27 197 321 182 6 chr11 68385704 68385869 -82397684 - L2 LINE L2 -245 3068 2875 1682 194 0 16 chr11 68385926 68386105 -82397448 - AluJo SINE Alu 0 312 139 2241 100 0 0 chr11 68386105 68386404 -82397149 - AluSx SINE Alu -13 299 1 1682 194 0 16 chr11 68386404 68386539 -82397014 - AluJo SINE Alu -173 139 3 313 277 146 0 chr11 68386581 68386711 -82396842 - L2 LINE L2 -565 2749 2601 229 241 37 28 chr11 68388218 68388326 -82395227 + L2 LINE L2 1990 2098 -1216 241 247 62 118 chr11 68389153 68389331 -82394222 + MIR SINE MIR 26 193 -69 598 266 38 6 chr11 68389594 68389752 -82393801 - MIR SINE MIR -75 187 25 1549 144 93 4 chr11 68389752 68389909 -82393644 - AluJo SINE Alu -9 303 162 441 0 0 0 chr11 68389909 68389958 -82393595 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 1549 144 93 4 chr11 68389958 68390078 -82393475 - AluJo SINE Alu -150 162 1 379 257 0 73 chr11 68390980 68391116 -82392437 + Charlie8 DNA MER1_type 46 171 -2246 315 283 11 11 chr11 68391388 68391480 -82392073 - L2 LINE L2 -51 3262 3171 556 286 148 10 chr11 68391536 68391739 -82391814 - MIR SINE MIR -30 232 2 234 0 0 0 chr11 68391917 68391943 -82391610 + (A)n Simple_repeat Simple_repeat 1 26 0 2052 98 17 10 chr11 68391943 68392238 -82391315 + AluSc SINE Alu 1 297 -12 479 232 3 16 chr11 68392824 68393141 -82390412 + (CCA)n Simple_repeat Simple_repeat 1 312 0 190 200 46 31 chr11 68394074 68394139 -82389414 - MIR SINE MIR -117 145 80 658 135 12 14 chr11 68394315 68394566 -82388987 + AluJo SINE Alu 1 300 -12 25 0 0 0 chr11 68394781 68394806 -82388747 + AT_rich Low_complexity Low_complexity 1 25 0 320 249 194 30 chr11 68397450 68397615 -82385938 - MIR3 SINE MIR -10 198 7 339 298 88 0 chr11 68398276 68398390 -82385163 - MIR SINE MIR -68 194 71 273 258 215 0 chr11 68398403 68398496 -82385057 + MIR SINE MIR 2 114 -148 299 322 55 33 chr11 68398545 68398699 -82384854 + L1M4 LINE L1 3499 3657 -2489 320 302 13 82 chr11 68398699 68398858 -82384695 + MIR SINE MIR 114 261 -1 379 289 102 13 chr11 68398932 68399083 -82384470 - MIR SINE MIR -45 217 58 269 235 137 10 chr11 68399090 68399192 -82384361 - L2 LINE L2 -1 3312 3198 219 323 0 0 chr11 68399720 68399785 -82383768 + MIR SINE MIR 127 191 -71 451 317 7 7 chr11 68399820 68399965 -82383588 + MER91A DNA MER1_type 2 146 -50 1550 277 50 20 chr11 68399965 68400467 -82383086 - LTR53 LTR ERVL 0 519 3 184 291 265 0 chr11 68400803 68401033 -82382520 + L2 LINE L2 2462 2752 -562 6490 223 84 68 chr11 68401100 68401586 -82381967 + L1ME LINE L1 2748 3225 -2941 2231 119 0 0 chr11 68401586 68401897 -82381656 + AluSx SINE Alu 1 311 -1 6490 223 84 68 chr11 68401897 68402442 -82381111 + L1ME LINE L1 3225 3760 -2406 216 0 0 0 chr11 68402442 68402466 -82381087 + (GA)n Simple_repeat Simple_repeat 2 25 0 6490 223 84 68 chr11 68402466 68404073 -82379480 + L1ME LINE L1 3760 5433 -733 1918 110 9 35 chr11 68404077 68404394 -82379159 + AluSx SINE Alu 1 309 -3 437 280 47 20 chr11 68404746 68404896 -82378657 - L2 LINE L2 -2031 1283 1130 395 196 124 78 chr11 68404935 68405088 -82378465 + L1MD3 LINE L1 7432 7591 -404 1056 155 0 3 chr11 68405527 68405923 -82377630 + (TGGA)n Simple_repeat Simple_repeat 1 394 0 405 269 0 0 chr11 68405983 68406102 -82377451 + L1M4 LINE L1 3497 3615 -2531 2066 89 58 3 chr11 68407155 68407448 -82376105 + AluY SINE Alu 1 309 -2 316 319 0 9 chr11 68407600 68407713 -82375840 + (TG)n Simple_repeat Simple_repeat 2 113 0 2200 74 3 10 chr11 68408088 68408384 -82375169 - AluSp SINE Alu 0 313 20 935 273 40 8 chr11 68408534 68408787 -82374766 - MIR SINE MIR 0 262 2 348 208 0 0 chr11 68410187 68410283 -82373270 + (CACCAT)n Simple_repeat Simple_repeat 3 98 0 616 194 6 6 chr11 68410314 68410494 -82373059 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 375 239 0 0 chr11 68410520 68410650 -82372903 + (CACCAT)n Simple_repeat Simple_repeat 4 133 0 600 210 0 0 chr11 68410655 68410822 -82372731 + (CCA)n Simple_repeat Simple_repeat 1 167 0 433 243 6 6 chr11 68410852 68411029 -82372524 + (CACCAT)n Simple_repeat Simple_repeat 1 177 0 185 231 0 0 chr11 68411377 68411416 -82372137 - MIR SINE MIR -112 150 112 268 306 320 16 chr11 68412393 68413152 -82370401 + L2 LINE L2 723 1712 -1602 2007 117 48 0 chr11 68413374 68413664 -82369889 + AluSx SINE Alu 1 304 -8 561 272 66 33 chr11 68413684 68413927 -82369626 + MLT1J1 LTR MaLR 195 445 -1 1736 302 142 22 chr11 68413928 68414163 -82369390 + L2 LINE L2 1737 1943 -1370 2292 99 0 3 chr11 68414163 68414467 -82369086 - AluSq SINE Alu -10 303 1 1736 302 142 22 chr11 68414467 68415615 -82367938 + L2 LINE L2 1943 3303 -10 363 317 6 67 chr11 68415620 68415633 -82367920 + HAL1 LINE L1 945 957 -1550 2214 112 0 3 chr11 68415633 68415945 -82367608 - AluSx SINE Alu -1 311 1 363 317 6 67 chr11 68415945 68416095 -82367458 + HAL1 LINE L1 957 1098 -1409 2007 137 0 10 chr11 68416109 68416408 -82367145 + AluSx SINE Alu 1 296 -16 1825 250 253 17 chr11 68416409 68417290 -82366263 - L2 LINE L2 -911 2403 1315 238 261 0 0 chr11 68417457 68417526 -82366027 + L1M4 LINE L1 2120 2188 -3958 456 275 88 35 chr11 68417581 68417752 -82365801 + L1ME4a LINE L1 5942 6121 0 416 107 0 0 chr11 68417930 68417986 -82365567 + AluS SINE Alu 29 84 -228 371 316 0 0 chr11 68418399 68418494 -82365059 + (CA)n Simple_repeat Simple_repeat 1 95 0 2145 123 0 13 chr11 68418500 68418816 -82364737 - AluSx SINE Alu 0 312 1 230 280 11 21 chr11 68422608 68422701 -82360852 + CT-rich Low_complexity Low_complexity 1 92 0 338 98 0 0 chr11 68423011 68423062 -82360491 + L2 LINE L2 3263 3313 0 339 85 0 0 chr11 68423079 68423126 -82360427 + (TAGG)n Simple_repeat Simple_repeat 1 47 0 1199 93 0 19 chr11 68423162 68423634 -82359919 + (TGGA)n Simple_repeat Simple_repeat 1 462 0 1296 70 0 31 chr11 68424140 68424554 -82358999 + (TGGA)n Simple_repeat Simple_repeat 1 401 0 236 98 0 24 chr11 68424567 68424608 -82358945 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 204 67 0 0 chr11 68425052 68425082 -82358471 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 324 239 141 0 chr11 68425082 68425174 -82358379 - L2 LINE L2 -13 3259 3155 225 222 50 30 chr11 68425254 68425353 -82358200 + L2 LINE L2 1806 1906 -1408 278 318 169 29 chr11 68425394 68425743 -82357810 + L2 LINE L2 2164 2561 -753 609 251 93 42 chr11 68427344 68427688 -82355865 - LTR33A LTR ERVL -146 377 44 267 175 10 82 chr11 68427713 68427810 -82355743 + C-rich Low_complexity Low_complexity 3 92 0 317 293 41 8 chr11 68429141 68429264 -82354289 - MIR3 SINE MIR -50 158 32 567 332 78 0 chr11 68430630 68430835 -82352718 - MIR SINE MIR -21 241 21 28 0 0 0 chr11 68436054 68436082 -82347471 + GC_rich Low_complexity Low_complexity 1 28 0 226 127 0 55 chr11 68436470 68436525 -82347028 + (GAAAA)n Simple_repeat Simple_repeat 4 55 0 231 152 0 0 chr11 68436613 68436659 -82346894 + T-rich Low_complexity Low_complexity 1 46 0 200 193 0 84 chr11 68436832 68436915 -82346638 + CT-rich Low_complexity Low_complexity 3 78 0 202 226 19 0 chr11 68437432 68437485 -82346068 + A-rich Low_complexity Low_complexity 2 55 0 182 280 75 21 chr11 68438402 68438495 -82345058 - MIR SINE MIR -94 168 71 427 242 0 0 chr11 68438635 68438730 -82344823 + MIR3 SINE MIR 62 156 -52 431 298 94 47 chr11 68440977 68441148 -82342405 - MER91A DNA MER1_type -17 179 1 293 276 61 0 chr11 68441504 68441602 -82341951 + MLT1J2 LTR MaLR 23 126 -324 429 271 69 29 chr11 68441659 68441861 -82341692 + MLT1J2 LTR MaLR 243 450 0 910 275 126 15 chr11 68443114 68443503 -82340050 + MLT1J2 LTR MaLR 11 442 -8 393 22 0 0 chr11 68443930 68443976 -82339577 + (TG)n Simple_repeat Simple_repeat 2 47 0 216 355 0 0 chr11 68444007 68444100 -82339453 + (TG)n Simple_repeat Simple_repeat 2 94 0 222 37 0 0 chr11 68445262 68445289 -82338264 + (TG)n Simple_repeat Simple_repeat 1 27 0 212 239 0 0 chr11 68450896 68450942 -82332611 + (TGG)n Simple_repeat Simple_repeat 3 48 0 303 306 14 34 chr11 68451184 68451331 -82332222 + GA-rich Low_complexity Low_complexity 3 146 0 475 240 39 7 chr11 68452702 68452856 -82330697 + MER103 DNA DNA 8 166 0 264 152 22 0 chr11 68452917 68452963 -82330590 - L2 LINE L2 -4 3309 3263 325 266 65 58 chr11 68452991 68453145 -82330408 - MIR SINE MIR -36 226 72 198 0 0 0 chr11 68454529 68454551 -82329002 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 200 245 0 19 chr11 68454869 68454922 -82328631 + A-rich Low_complexity Low_complexity 2 53 0 622 278 128 4 chr11 68456234 68456461 -82327092 - MIR SINE MIR 0 262 8 21 82 0 0 chr11 68458453 68458502 -82325051 + GC_rich Low_complexity Low_complexity 1 49 0 194 188 21 42 chr11 68458941 68458989 -82324564 - L2 LINE L2 -8 3264 3218 500 333 56 5 chr11 68459600 68459798 -82323755 - MIR SINE MIR -34 228 21 276 219 0 31 chr11 68460355 68460419 -82323134 + (CATG)n Simple_repeat Simple_repeat 3 64 0 491 269 63 0 chr11 68461451 68461626 -82321927 - MIR SINE MIR -48 214 26 232 366 0 0 chr11 68464203 68464296 -82319257 + G-rich Low_complexity Low_complexity 1 93 0 212 296 0 0 chr11 68464338 68464392 -82319161 + C-rich Low_complexity Low_complexity 3 56 0 216 0 0 0 chr11 68464497 68464521 -82319032 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 340 339 95 51 chr11 68468712 68469143 -82314410 + L1M4c LINE L1 853 1302 -5082 270 81 0 0 chr11 68469325 68469362 -82314191 + (GGATG)n Simple_repeat Simple_repeat 5 41 0 246 128 0 0 chr11 68470769 68470808 -82312745 + (CAG)n Simple_repeat Simple_repeat 1 39 0 222 254 0 0 chr11 68470809 68470872 -82312681 + G-rich Low_complexity Low_complexity 2 64 0 200 308 0 22 chr11 68471195 68471286 -82312267 + G-rich Low_complexity Low_complexity 6 94 0 288 313 0 47 chr11 68471425 68471575 -82311978 + G-rich Low_complexity Low_complexity 5 147 0 425 127 13 0 chr11 68471628 68471707 -82311846 + GA-rich Low_complexity Low_complexity 3 82 0 325 288 17 40 chr11 68472571 68472748 -82310805 + G-rich Low_complexity Low_complexity 5 177 0 358 256 56 32 chr11 68474431 68474556 -82308997 + MIR3 SINE MIR 14 141 -67 396 88 0 0 chr11 68475138 68475195 -82308358 + (TG)n Simple_repeat Simple_repeat 2 58 0 185 228 53 35 chr11 68477594 68477651 -82305902 + MIR3 SINE MIR 140 197 -11 264 250 75 0 chr11 68480346 68480426 -82303127 + MER91C DNA MER1_type 36 121 -19 186 321 55 37 chr11 68482356 68482465 -82301088 - MIR SINE MIR -69 139 29 468 279 20 41 chr11 68482710 68482857 -82300696 + MIR3 SINE MIR 7 150 -58 200 313 15 30 chr11 68483206 68483337 -82300216 + GA-rich Low_complexity Low_complexity 6 134 0 180 281 203 55 chr11 68484268 68484524 -82299029 + L3 LINE CR1 1279 1572 -5 294 313 82 67 chr11 68485438 68485633 -82297920 - MIR SINE MIR -45 217 20 2247 82 0 0 chr11 68486675 68486969 -82296584 + AluSg1 SINE Alu 1 294 -15 320 262 126 0 chr11 68487192 68487295 -82296258 + L2 LINE L2 3197 3312 -1 299 297 89 99 chr11 68487502 68487704 -82295849 + MIR SINE MIR 20 219 -43 259 267 23 35 chr11 68487817 68487903 -82295650 + L2 LINE L2 3187 3271 -1 581 298 51 17 chr11 68489526 68489761 -82293792 - MIR SINE MIR -7 255 13 2137 126 0 16 chr11 68489901 68490218 -82293335 + AluSx SINE Alu 1 312 0 242 114 0 23 chr11 68490221 68490265 -82293288 + (GGA)n Simple_repeat Simple_repeat 2 44 0 2434 71 0 3 chr11 68490430 68490740 -82292813 + AluY SINE Alu 1 309 -2 245 114 45 0 chr11 68490752 68490796 -82292757 + MER31A LTR ERV1 353 398 -87 2148 95 10 26 chr11 68491018 68491322 -82292231 + AluSq SINE Alu 1 299 -14 2274 156 11 47 chr11 68491713 68492125 -82291428 + L1MB3 LINE L1 5735 6131 -52 2101 116 3 7 chr11 68492125 68492426 -82291127 + AluSq SINE Alu 1 300 -13 2274 156 11 47 chr11 68492426 68492462 -82291091 + L1MB3 LINE L1 6131 6167 -16 2360 69 0 0 chr11 68492640 68492931 -82290622 + AluSg SINE Alu 1 291 -19 2460 69 0 0 chr11 68492931 68493235 -82290318 + AluSc SINE Alu 1 304 -5 330 343 39 58 chr11 68493928 68494135 -82289418 + L2 LINE L2 3110 3312 -1 2254 88 14 0 chr11 68494135 68494432 -82289121 - AluSx SINE Alu -11 301 1 2288 88 0 0 chr11 68494499 68494793 -82288760 - AluY SINE Alu -17 294 1 258 311 246 11 chr11 68494816 68494999 -82288554 - MIR SINE MIR -17 245 20 466 307 69 0 chr11 68495949 68496138 -82287415 - MIR SINE MIR -56 206 5 225 314 64 50 chr11 68498497 68498637 -82284916 + L2 LINE L2 3111 3252 -20 307 211 56 14 chr11 68501016 68501087 -82282466 + MIR SINE MIR 77 150 -112 189 0 0 0 chr11 68501651 68501672 -82281881 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1949 129 7 3 chr11 68501691 68501986 -82281567 + AluSx SINE Alu 5 300 -12 520 209 22 0 chr11 68501998 68502089 -82281464 - FLAM_A SINE Alu -32 110 18 2120 120 0 3 chr11 68502108 68502409 -82281144 - AluSq SINE Alu 0 313 14 259 259 0 130 chr11 68502761 68502869 -82280684 - MIR SINE MIR -50 212 119 204 267 13 0 chr11 68503836 68503911 -82279642 + (CA)n Simple_repeat Simple_repeat 2 77 0 226 190 17 17 chr11 68505010 68505068 -82278485 + A-rich Low_complexity Low_complexity 2 59 0 233 258 0 15 chr11 68505228 68505294 -82278259 + C-rich Low_complexity Low_complexity 1 65 0 216 0 0 0 chr11 68506024 68506048 -82277505 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 2449 61 0 0 chr11 68507286 68507581 -82275972 + AluY SINE Alu 1 295 -16 568 281 34 0 chr11 68508458 68508604 -82274949 + MIR SINE MIR 56 206 -56 2272 103 0 6 chr11 68508748 68509059 -82274494 + AluSx SINE Alu 4 312 0 243 228 63 38 chr11 68509380 68509459 -82274094 - L2 LINE L2 -188 3084 3004 512 264 162 0 chr11 68509481 68509648 -82273905 - MIR SINE MIR -33 229 36 2231 122 0 0 chr11 68511268 68511580 -82271973 + AluSx SINE Alu 1 312 0 200 279 88 0 chr11 68511970 68512038 -82271515 + L2 LINE L2 3138 3211 -61 216 171 0 0 chr11 68514702 68514737 -82268816 + (TG)n Simple_repeat Simple_repeat 2 36 0 323 286 69 28 chr11 68516884 68517041 -82266512 + MIR SINE MIR 20 181 -62 873 111 32 0 chr11 68517174 68517300 -82266253 - FLAM_C SINE Alu -3 130 1 430 305 43 30 chr11 68517413 68517577 -82265976 - L2 LINE L2 0 3272 3107 321 301 0 21 chr11 68520059 68520152 -82263401 + MIR SINE MIR 56 146 -62 329 159 0 14 chr11 68520818 68520887 -82262666 + GA-rich Low_complexity Low_complexity 1 68 0 210 143 0 0 chr11 68521225 68521260 -82262293 + (T)n Simple_repeat Simple_repeat 1 35 0 185 279 0 87 chr11 68521351 68521455 -82262098 - L2 LINE L2 -2802 512 418 201 74 0 0 chr11 68523650 68523677 -82259876 + (CA)n Simple_repeat Simple_repeat 2 28 0 352 257 9 28 chr11 68523970 68524079 -82259474 + CT-rich Low_complexity Low_complexity 4 110 0 420 97 0 0 chr11 68524433 68524495 -82259058 + (CA)n Simple_repeat Simple_repeat 2 63 0 349 323 24 0 chr11 68525959 68526083 -82257470 - MIR3 SINE MIR -47 161 35 498 237 44 15 chr11 68526347 68526482 -82257071 + MIR3 SINE MIR 67 205 -3 2160 82 62 0 chr11 68527351 68527642 -82255911 - AluSp SINE Alu -3 310 2 215 324 57 0 chr11 68528388 68528493 -82255060 - MIR SINE MIR -29 233 123 199 256 38 113 chr11 68528488 68528621 -82254932 + L2 LINE L2 2530 2652 -662 * 397 310 186 50 chr11 68528662 68529340 -82254213 + L2 LINE L2 2207 2976 -338 1721 160 7 3 chr11 68529399 68529686 -82253867 + AluJb SINE Alu 13 300 -12 950 97 14 29 chr11 68529724 68529931 -82253622 + SVA Other Other 591 794 -592 6615 32 5 11 chr11 68529952 68530752 -82252801 + SVA Other Other 592 1386 0 920 169 85 0 chr11 68530758 68530935 -82252618 + AluJo SINE Alu 121 312 0 284 345 58 22 chr11 68531071 68531210 -82252343 + L2 LINE L2 3127 3270 -2 578 264 60 34 chr11 68531214 68531436 -82252117 - MIR SINE MIR 0 262 32 245 284 17 60 chr11 68531584 68531700 -82251853 + L2 LINE L2 2944 3054 -218 592 251 170 27 chr11 68531709 68531932 -82251621 - MIR SINE MIR -2 260 6 230 239 22 0 chr11 68532314 68532360 -82251193 + MER66A LTR ERV1 287 333 -145 234 0 0 0 chr11 68532529 68532555 -82250998 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 441 0 0 0 chr11 68532554 68532603 -82250950 + (GA)n Simple_repeat Simple_repeat 2 50 0 292 299 84 0 chr11 68533244 68533351 -82250202 + MIR SINE MIR 107 222 -40 323 316 182 14 chr11 68533511 68533868 -82249685 + L2 LINE L2 2177 2593 -721 559 24 81 8 chr11 68533995 68534118 -82249435 + (TA)n Simple_repeat Simple_repeat 1 132 0 2845 25 0 3 chr11 68534120 68534444 -82249109 - L1PA5 LINE L1 -13 6141 5819 191 163 82 20 chr11 68534839 68534888 -82248665 - MIR SINE MIR -70 192 141 762 107 0 0 chr11 68534888 68534991 -82248562 - AluSg/x SINE Alu -13 299 197 314 271 62 42 chr11 68535001 68535030 -82248523 - MIR SINE MIR -114 148 121 2146 64 22 51 chr11 68535030 68535341 -82248212 + AluY SINE Alu 1 302 -9 314 271 62 42 chr11 68535341 68535455 -82248098 - MIR SINE MIR -141 121 2 821 183 7 0 chr11 68535499 68535652 -82247901 - MIR SINE MIR -8 254 101 2245 86 3 17 chr11 68535747 68536049 -82247504 + AluSp SINE Alu 1 298 -15 190 278 31 52 chr11 68536058 68536155 -82247398 + L2 LINE L2 3173 3267 -5 2312 89 3 0 chr11 68536845 68537149 -82246404 + AluSx SINE Alu 1 305 -7 395 270 30 0 chr11 68537617 68537717 -82245836 - L2 LINE L2 -1 3312 3210 2264 116 0 0 chr11 68537832 68538143 -82245410 - AluSx SINE Alu -1 311 1 219 36 0 0 chr11 68538173 68538201 -82245352 + (CA)n Simple_repeat Simple_repeat 1 28 0 189 107 0 0 chr11 68541575 68541603 -82241950 + (CAG)n Simple_repeat Simple_repeat 1 28 0 36 0 0 0 chr11 68541640 68541676 -82241877 + GC_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr11 68541818 68541853 -82241700 + GC_rich Low_complexity Low_complexity 1 35 0 324 223 8 74 chr11 68542887 68543008 -82240545 + GA-rich Low_complexity Low_complexity 1 113 0 376 302 106 26 chr11 68543113 68543302 -82240251 - MIR SINE MIR -31 231 28 1221 110 0 0 chr11 68546561 68546734 -82236819 - AluSg/x SINE Alu -8 302 130 1971 110 15 37 chr11 68546735 68547061 -82236492 - THE1B LTR MaLR -41 323 5 2353 160 57 0 chr11 68547061 68547467 -82236086 + L1MB3 LINE L1 5751 6179 -4 381 217 122 0 chr11 68548397 68548512 -82235041 + MIR SINE MIR 53 181 -81 234 349 79 0 chr11 68548902 68549028 -82234525 + L3 LINE CR1 1041 1176 -401 807 285 73 42 chr11 68549054 68549437 -82234116 - MLT1I LTR MaLR 0 409 15 209 294 0 0 chr11 68549486 68549537 -82234016 + L3 LINE CR1 1432 1482 -95 807 155 0 49 chr11 68549579 68549721 -82233832 + AluJo SINE Alu 3 137 -175 2299 220 20 20 chr11 68549721 68550217 -82233336 - MLT1F LTR MaLR -46 496 1 527 236 61 132 chr11 68550220 68550530 -82233023 - MLT1F-int LTR MaLR -3 1368 1081 778 172 0 0 chr11 68550543 68550665 -82232888 + FLAM_A SINE Alu 8 129 -13 362 310 114 16 chr11 68550901 68551085 -82232468 - MLT1F-int LTR MaLR -478 893 692 946 309 9 3 chr11 68551269 68551589 -82231964 - MLT1F-int LTR MaLR -770 601 280 846 146 0 15 chr11 68551627 68551757 -82231796 + AluJ SINE Alu 1 128 -174 697 187 0 16 chr11 68551757 68551880 -82231673 + AluJ SINE Alu 183 303 -9 1058 298 49 8 chr11 68551947 68552105 -82231448 + L2 LINE L2 2912 3062 -251 2158 88 7 3 chr11 68552105 68552401 -82231152 + AluSx SINE Alu 1 297 -15 1058 298 49 8 chr11 68552401 68552628 -82230925 + L2 LINE L2 3062 3313 0 2256 80 7 3 chr11 68552900 68553201 -82230352 - AluSp SINE Alu -10 303 2 2294 76 16 3 chr11 68553389 68553692 -82229861 - AluSg SINE Alu -3 307 1 1124 209 8 13 chr11 68553829 68554063 -82229490 + MER46C DNA MER2_type 93 325 -13 236 326 41 0 chr11 68554074 68554172 -82229381 + MIR SINE MIR 149 250 -12 1321 173 24 144 chr11 68554226 68554307 -82229246 - L1M4 LINE L1 -1691 4455 4366 1836 132 22 44 chr11 68554307 68554626 -82228927 - AluSx SINE Alu 0 312 1 1321 173 24 144 chr11 68554626 68554689 -82228864 - L1M4 LINE L1 -1780 4366 4297 698 134 39 31 chr11 68554689 68554816 -82228737 - FLAM_A SINE Alu -5 128 1 1321 173 24 144 chr11 68554816 68554894 -82228659 - L1M4 LINE L1 -1849 4297 4211 1991 125 10 0 chr11 68554894 68555189 -82228364 - AluSq SINE Alu -15 298 1 1321 173 24 144 chr11 68555189 68555456 -82228097 - L1M4 LINE L1 -1935 4211 4023 1201 178 0 0 chr11 68555458 68555660 -82227893 + AluJb SINE Alu 94 295 -17 2416 66 3 0 chr11 68555662 68555963 -82227590 + AluSp SINE Alu 1 302 -11 2314 231 35 19 chr11 68555970 68556218 -82227335 - L1M4 LINE L1 -2113 4033 3790 1972 135 7 7 chr11 68556218 68556522 -82227031 - AluJo SINE Alu -8 304 1 2314 231 35 19 chr11 68556522 68556893 -82226660 - L1M4 LINE L1 -2356 3790 3404 1156 89 42 0 chr11 68556893 68557061 -82226492 + MER30 DNA MER1_type 1 175 -55 805 254 51 0 chr11 68557433 68557630 -82225923 + MER20 DNA MER1_type 1 207 -12 331 237 23 130 chr11 68557649 68557780 -82225773 - L1ME4a LINE L1 -26 6095 5979 702 283 62 82 chr11 68559474 68559879 -82223674 - L1MC5 LINE L1 -32 7929 7542 1694 156 3 19 chr11 68559879 68560186 -82223367 - AluJo SINE Alu -10 302 1 702 283 62 82 chr11 68560186 68560463 -82223090 - L1MC5 LINE L1 -419 7542 7261 623 237 49 94 chr11 68560578 68561163 -82222390 + MLT1G LTR MaLR 3 568 -22 225 193 165 28 chr11 68561178 68561287 -82222266 - L1MC4 LINE L1 -793 7249 7126 2104 123 3 0 chr11 68562005 68562314 -82221239 - AluSx SINE Alu -2 310 1 319 358 17 39 chr11 68562317 68562496 -82221057 - MIR SINE MIR -6 256 82 326 302 56 40 chr11 68563266 68563392 -82220161 - MIR SINE MIR -78 184 57 226 278 65 19 chr11 68563478 68563586 -82219967 - L1ME4a LINE L1 -2 6119 6007 559 266 28 7 chr11 68563606 68563749 -82219804 - MER5A DNA MER1_type -1 188 43 991 211 14 24 chr11 68563777 68563985 -82219568 - MER20 DNA MER1_type -1 218 13 2347 96 0 0 chr11 68564002 68564314 -82219239 - AluSx SINE Alu 0 312 1 229 271 0 0 chr11 68564368 68564416 -82219137 + (CA)n Simple_repeat Simple_repeat 1 48 0 343 298 32 11 chr11 68564418 68564512 -82219041 - L1ME4a LINE L1 -162 5959 5864 443 173 113 131 chr11 68565443 68565502 -82218051 - MER63A DNA MER1_type -1523 165 106 1989 120 14 0 chr11 68565502 68565793 -82217760 + AluSq SINE Alu 1 295 -18 443 173 113 131 chr11 68565793 68565901 -82217652 - MER63A DNA MER1_type -1582 106 1 2329 87 3 3 chr11 68566485 68566797 -82216756 - AluSx SINE Alu 0 312 1 2173 99 30 0 chr11 68567260 68567564 -82215989 + AluSp SINE Alu 1 313 0 1272 231 14 41 chr11 68567628 68567991 -82215562 - MLT1J LTR MaLR -158 353 1 234 140 0 0 chr11 68568418 68568468 -82215085 - L1MB7 LINE L1 -19 6165 6116 697 205 0 0 chr11 68568469 68568586 -82214967 + FLAM_C SINE Alu 1 117 -26 413 95 0 0 chr11 68568593 68568656 -82214897 - L1MB7 LINE L1 -54 6130 6068 1860 151 3 13 chr11 68568670 68568975 -82214578 - AluJb SINE Alu -10 302 1 334 333 0 0 chr11 68569126 68569225 -82214328 - L2 LINE L2 -2 3270 3172 192 246 18 0 chr11 68569243 68569300 -82214253 - L2 LINE L2 -299 2973 2916 317 182 0 0 chr11 68569550 68569605 -82213948 + L1MB7 LINE L1 6111 6165 -19 308 279 16 70 chr11 68569723 68569852 -82213701 - L1MB7 LINE L1 -2286 5522 5401 2165 94 3 3 chr11 68569960 68570258 -82213295 + AluSx SINE Alu 1 298 -14 788 251 29 10 chr11 68570278 68570485 -82213068 + L2 LINE L2 3103 3313 0 2279 80 7 3 chr11 68570757 68571058 -82212495 - AluSp SINE Alu -10 303 2 2321 76 16 3 chr11 68571246 68571549 -82212004 - AluSg SINE Alu -3 307 1 1050 209 8 13 chr11 68571686 68571920 -82211633 + MER46C DNA MER2_type 93 325 -13 254 355 36 0 chr11 68571931 68572041 -82211512 + MIR SINE MIR 149 262 0 234 245 0 0 chr11 68572083 68572181 -82211372 - L1MB7 LINE L1 -1691 4455 4358 493 287 90 19 chr11 68572880 68573148 -82210405 + L1MC4a LINE L1 5600 5886 -1922 1796 145 7 14 chr11 68573187 68573497 -82210056 + AluJb SINE Alu 3 310 0 1061 165 0 0 chr11 68573497 68573661 -82209892 + AluJb SINE Alu 134 297 -15 21 36 0 0 chr11 68574292 68574320 -82209233 + GC_rich Low_complexity Low_complexity 1 28 0 379 273 46 124 chr11 68576391 68576546 -82207007 + MIR SINE MIR 2 168 -94 2266 89 0 10 chr11 68576546 68576859 -82206694 + AluSg SINE Alu 1 310 0 379 273 46 124 chr11 68576859 68576880 -82206673 + MIR SINE MIR 168 189 -73 2037 114 0 0 chr11 68576880 68577161 -82206392 + AluSg SINE Alu 9 289 -21 2358 77 0 3 chr11 68577162 68577474 -82206079 + AluY SINE Alu 1 311 0 379 273 46 124 chr11 68577474 68577576 -82205977 + MIR SINE MIR 188 261 -1 184 222 0 0 chr11 68577625 68577661 -82205892 + L2 LINE L2 3220 3255 -17 1576 169 20 34 chr11 68577773 68578069 -82205484 + AluJo SINE Alu 2 293 -19 1969 59 114 7 chr11 68578069 68578342 -82205211 + AluSg1 SINE Alu 1 302 -7 552 79 169 45 chr11 68578346 68578435 -82205118 + FRAM SINE Alu 48 147 -29 236 30 30 0 chr11 68578435 68578468 -82205085 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr11 68580045 68580066 -82203487 + GC_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr11 68580307 68580332 -82203221 + GC_rich Low_complexity Low_complexity 1 25 0 527 176 52 7 chr11 68580578 68580672 -82202881 - MER53 DNA DNA -12 177 74 2214 107 3 0 chr11 68580672 68580981 -82202572 - AluSg SINE Alu 0 310 1 527 176 52 7 chr11 68580981 68581022 -82202531 - MER53 DNA DNA -115 74 36 1306 164 0 13 chr11 68581027 68581258 -82202295 - AluJb SINE Alu 0 312 85 528 262 128 18 chr11 68583133 68583297 -82200256 + MIR SINE MIR 15 196 -66 843 50 0 0 chr11 68583606 68583706 -82199847 - HY3 scRNA scRNA -1 100 1 209 301 59 108 chr11 68584302 68584674 -82198879 + L2 LINE L2 2896 3249 -23 213 39 0 0 chr11 68584823 68584849 -82198704 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 2014 108 36 33 chr11 68585202 68585509 -82198044 - AluSx SINE Alu -4 308 1 2135 117 0 0 chr11 68585844 68586135 -82197418 + AluSx SINE Alu 1 291 -21 216 0 0 0 chr11 68586249 68586273 -82197280 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 383 332 56 42 chr11 68588871 68589085 -82194468 + MIR SINE MIR 46 262 0 1992 147 0 10 chr11 68589567 68589874 -82193679 + AluJb SINE Alu 2 305 -7 289 316 23 58 chr11 68589901 68590075 -82193478 - L2 LINE L2 -174 3098 2931 259 169 0 135 chr11 68592125 68592214 -82191339 - MIR3 SINE MIR -43 165 89 * 311 290 164 4 chr11 68592208 68592363 -82191190 + MIR SINE MIR 10 146 -62 25 0 0 0 chr11 68594273 68594298 -82189255 + GC_rich Low_complexity Low_complexity 1 25 0 36 23 0 0 chr11 68594319 68594362 -82189191 + GC_rich Low_complexity Low_complexity 1 43 0 281 325 32 48 chr11 68594663 68594789 -82188764 - MIR SINE MIR -43 219 96 27 0 0 0 chr11 68594937 68594964 -82188589 + GC_rich Low_complexity Low_complexity 1 27 0 288 314 60 9 chr11 68595630 68595814 -82187739 + MIR SINE MIR 60 253 -9 854 141 0 0 chr11 68595816 68595937 -82187616 + FLAM_C SINE Alu 2 122 -11 733 130 113 0 chr11 68596404 68596519 -82187034 + FLAM_A SINE Alu 1 128 -5 799 188 94 0 chr11 68596678 68596827 -82186726 - FRAM SINE Alu -2 164 2 2199 110 0 3 chr11 68596843 68597152 -82186401 - AluY SINE Alu -2 309 2 1376 151 9 0 chr11 68597212 68597430 -82186123 - AluJo SINE Alu -92 220 1 560 304 187 24 chr11 68597521 68597731 -82185822 - L2 LINE L2 0 3313 3139 2315 66 3 0 chr11 68597731 68598019 -82185534 + AluSc SINE Alu 1 289 -20 560 304 187 24 chr11 68598019 68598311 -82185242 - L2 LINE L2 -174 3139 2727 628 206 13 32 chr11 68598315 68598470 -82185083 - L2 LINE L2 -718 2596 2445 2250 79 3 0 chr11 68598484 68598774 -82184779 + AluY SINE Alu 1 291 -20 2192 123 0 0 chr11 68598782 68599092 -82184461 + AluSx SINE Alu 1 310 -2 2528 34 0 0 chr11 68599099 68599390 -82184163 + AluY SINE Alu 1 291 -20 2226 66 0 11 chr11 68599390 68599714 -82183839 - AluY SINE Alu 0 321 1 874 153 0 0 chr11 68599717 68599848 -82183705 - AluJo/FLAM SINE Alu -171 131 1 248 247 0 59 chr11 68599849 68599934 -82183619 - L2 LINE L2 -856 2458 2379 2257 87 10 3 chr11 68599965 68600264 -82183289 - AluSg SINE Alu -9 301 1 405 258 289 14 chr11 68600304 68600657 -82182896 - L2 LINE L2 -2153 1161 712 882 200 49 18 chr11 68601087 68601312 -82182241 + MIR SINE MIR 31 262 0 258 95 0 0 chr11 68601332 68601374 -82182179 + (TA)n Simple_repeat Simple_repeat 1 42 0 744 156 0 0 chr11 68601375 68601484 -82182069 - AluSg/x SINE Alu -19 293 185 1406 145 0 26 chr11 68601516 68601743 -82181810 - AluJo SINE Alu -91 221 1 639 242 114 22 chr11 68601743 68601970 -82181583 + MER58B DNA MER1_type 83 330 -11 1591 141 17 48 chr11 68602026 68602317 -82181236 + AluJo SINE Alu 17 298 -14 211 327 27 27 chr11 68602634 68602744 -82180809 + MIR SINE MIR 76 185 -77 2096 126 0 0 chr11 68603122 68603416 -82180137 + AluSx SINE Alu 1 294 -18 339 113 0 0 chr11 68603416 68603433 -82180120 + (CA)n Simple_repeat Simple_repeat 1 70 0 339 113 0 0 chr11 68603433 68603486 -82180067 + (CA)n Simple_repeat Simple_repeat 2 54 0 881 250 20 0 chr11 68603706 68603906 -82179647 + MIR SINE MIR 9 212 -50 300 207 76 2 chr11 68604119 68604192 -82179361 + MIR SINE MIR 77 154 -54 242 331 99 13 chr11 68604257 68604408 -82179145 - MIR SINE MIR -70 192 29 319 169 0 4 chr11 68604499 68604568 -82178985 - Alu SINE Alu -256 52 2 1977 119 0 39 chr11 68604747 68604926 -82178627 - AluSx SINE Alu -8 304 141 2343 85 0 0 chr11 68604926 68605221 -82178332 - AluSg SINE Alu -15 295 1 1977 119 0 39 chr11 68605221 68605352 -82178201 - AluSx SINE Alu -171 141 6 2185 86 17 0 chr11 68605359 68605651 -82177902 - AluY SINE Alu -14 297 1 1897 94 91 11 chr11 68605879 68606165 -82177388 - AluSg SINE Alu -1 309 1 2114 127 0 13 chr11 68606361 68606677 -82176876 - AluSx SINE Alu 0 312 1 835 154 0 21 chr11 68606677 68606820 -82176733 - FLAM_C SINE Alu -3 140 1 255 235 49 29 chr11 68606823 68606925 -82176628 - MIR SINE MIR -50 212 109 265 228 152 0 chr11 68607042 68607134 -82176419 + MIR SINE MIR 92 197 -65 1643 116 16 4 chr11 68607424 68607666 -82175887 - AluSc SINE Alu -5 304 60 197 350 0 0 chr11 68607695 68607755 -82175798 + L2 LINE L2 3252 3311 -2 225 0 0 0 chr11 68608357 68608382 -82175171 + (TG)n Simple_repeat Simple_repeat 1 25 0 351 0 0 0 chr11 68608428 68608467 -82175086 + (TG)n Simple_repeat Simple_repeat 1 39 0 405 0 0 0 chr11 68608513 68608558 -82174995 + (TG)n Simple_repeat Simple_repeat 1 45 0 207 0 0 0 chr11 68608604 68608627 -82174926 + (TG)n Simple_repeat Simple_repeat 1 23 0 378 0 0 0 chr11 68608677 68608719 -82174834 + (TG)n Simple_repeat Simple_repeat 2 43 0 270 0 0 0 chr11 68608766 68608796 -82174757 + (TG)n Simple_repeat Simple_repeat 2 31 0 252 0 0 0 chr11 68608839 68608867 -82174686 + (TG)n Simple_repeat Simple_repeat 2 29 0 871 134 0 0 chr11 68608985 68609119 -82174434 - FRAM SINE Alu -42 134 1 21 36 0 0 chr11 68610244 68610272 -82173281 + GC_rich Low_complexity Low_complexity 1 28 0 200 288 30 0 chr11 68610369 68610435 -82173118 - L2 LINE L2 -5 3308 3241 270 190 103 0 chr11 68611242 68611300 -82172253 + MIR SINE MIR 111 174 -88 207 193 123 18 chr11 68611779 68611836 -82171717 - MIR SINE MIR -65 143 81 28 61 0 0 chr11 68612090 68612139 -82171414 + AT_rich Low_complexity Low_complexity 1 49 0 2245 80 21 0 chr11 68612674 68612962 -82170591 + AluSx SINE Alu 1 294 -18 1560 87 0 5 chr11 68618541 68618747 -82164806 - AluSq SINE Alu -108 205 1 659 211 96 5 chr11 68618768 68618967 -82164586 - L1MC4 LINE L1 -139 7903 7687 1152 133 0 0 chr11 68618972 68619145 -82164408 - AluSg/x SINE Alu -4 308 136 180 125 0 0 chr11 68619570 68619602 -82163951 + (TCC)n Simple_repeat Simple_repeat 2 33 0 231 303 150 38 chr11 68621505 68621597 -82161956 + L2 LINE L2 2550 2630 -684 2327 93 0 0 chr11 68621597 68621899 -82161654 - AluSx SINE Alu -10 302 1 231 303 150 38 chr11 68621899 68622120 -82161433 + L2 LINE L2 2630 2898 -416 1642 189 3 19 chr11 68622121 68622438 -82161115 - AluJb SINE Alu 0 312 1 2464 68 3 0 chr11 68622467 68622776 -82160777 + AluSp SINE Alu 1 310 -3 263 294 98 0 chr11 68623476 68623568 -82159985 + MIR SINE MIR 35 135 -73 613 313 76 0 chr11 68626324 68626522 -82157031 - MIR SINE MIR -22 240 28 273 292 99 3 chr11 68626552 68626674 -82156879 + MIR3 SINE MIR 44 158 -50 21 36 0 0 chr11 68628192 68628220 -82155333 + GC_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 68628268 68628290 -82155263 + GC_rich Low_complexity Low_complexity 1 22 0 1887 82 123 4 chr11 68629045 68629313 -82154240 - AluSg SINE Alu 0 300 1 24 0 0 0 chr11 68629313 68629337 -82154216 + AT_rich Low_complexity Low_complexity 1 24 0 2210 84 3 13 chr11 68629514 68629812 -82153741 - AluSg SINE Alu -14 296 2 2227 110 13 0 chr11 68629823 68630132 -82153421 - AluSq SINE Alu 0 313 1 2313 90 0 0 chr11 68630132 68630431 -82153122 - AluSx SINE Alu -13 299 1 244 314 109 41 chr11 68630432 68630652 -82152901 + L2 LINE L2 2664 2898 -416 1642 189 3 19 chr11 68630653 68630970 -82152583 - AluJb SINE Alu 0 312 1 2341 68 3 0 chr11 68630999 68631291 -82152262 + AluSp SINE Alu 1 293 -20 938 159 35 0 chr11 68631613 68631783 -82151770 - LTR62 LTR ERVK -4 715 540 333 165 215 8 chr11 68632990 68633103 -82150450 - MIR SINE MIR -85 123 33 181 225 126 72 chr11 68633145 68633256 -82150297 + MIR SINE MIR 22 138 -124 285 337 31 0 chr11 68633934 68634032 -82149521 - MIR SINE MIR -141 121 21 187 299 91 13 chr11 68634742 68634819 -82148734 + MIR SINE MIR 35 117 -145 207 169 169 42 chr11 68635038 68635109 -82148444 + MIR SINE MIR 36 115 -147 196 226 24 119 chr11 68635191 68635275 -82148278 - L2 LINE L2 0 3313 3238 187 53 26 26 chr11 68639003 68639041 -82144512 + (TTTTTG)n Simple_repeat Simple_repeat 1 38 0 1943 112 31 0 chr11 68640043 68640329 -82143224 - AluSq SINE Alu -18 295 1 225 279 56 0 chr11 68640432 68640512 -82143041 - MIR SINE MIR -79 129 41 327 283 47 0 chr11 68642782 68642890 -82140663 + MIR SINE MIR 100 211 -51 2207 105 7 0 chr11 68643387 68643691 -82139862 + AluSx SINE Alu 1 306 -6 211 246 71 50 chr11 68643943 68644069 -82139484 - MIR SINE MIR -61 147 20 189 258 45 30 chr11 68645159 68645225 -82138328 + L2 LINE L2 3014 3080 -192 270 0 0 0 chr11 68645996 68646026 -82137527 + (TC)n Simple_repeat Simple_repeat 2 31 0 2080 93 0 14 chr11 68646026 68646315 -82137238 - AluSq SINE Alu -28 285 1 2393 66 0 7 chr11 68646365 68646667 -82136886 - AluY SINE Alu -11 300 1 263 256 24 80 chr11 68647392 68647517 -82136036 + MIR SINE MIR 59 176 -86 1839 127 14 20 chr11 68648933 68649225 -82134328 + AluJb SINE Alu 2 291 -21 2202 120 0 0 chr11 68649232 68649540 -82134013 + AluSg SINE Alu 1 308 -2 2024 109 0 7 chr11 68649542 68649869 -82133684 + AluSx SINE Alu 1 325 0 2240 90 3 0 chr11 68649876 68650175 -82133378 + AluSg SINE Alu 7 306 -4 401 242 44 0 chr11 68650449 68650540 -82133013 - MIR SINE MIR -109 153 59 30 27 0 0 chr11 68651432 68651469 -82132084 + AT_rich Low_complexity Low_complexity 1 37 0 255 217 68 33 chr11 68652673 68652764 -82130789 + MIR SINE MIR 81 146 -62 325 335 34 34 chr11 68653524 68653703 -82129850 - MIR3 SINE MIR -1 207 29 2348 89 0 6 chr11 68655446 68655759 -82127794 - AluY SINE Alu 0 311 1 664 212 15 0 chr11 68655762 68655899 -82127654 - AluSg/x SINE Alu -1 311 173 2401 64 0 0 chr11 68655971 68656266 -82127287 + AluY SINE Alu 1 295 -16 2367 79 0 3 chr11 68656277 68656581 -82126972 + AluSx SINE Alu 1 303 -9 196 241 93 0 chr11 68656620 68656674 -82126879 + MIR SINE MIR 82 140 -122 21 0 0 0 chr11 68658535 68658556 -82124997 + GC_rich Low_complexity Low_complexity 1 21 0 216 218 51 39 chr11 68658660 68658738 -82124815 - MIR SINE MIR -84 124 46 193 342 0 25 chr11 68658840 68658919 -82124634 + MER5A DNA MER1_type 63 139 -50 2402 65 13 0 chr11 68658919 68659228 -82124325 - AluSp SINE Alu 0 313 1 2217 104 0 22 chr11 68660818 68661134 -82122419 - AluSx SINE Alu -3 309 1 2101 136 0 0 chr11 68662177 68662472 -82121081 - AluSx SINE Alu -17 295 1 1088 89 0 0 chr11 68662472 68662607 -82120946 - AluSq/x SINE Alu -177 135 1 366 346 75 0 chr11 68662640 68662868 -82120685 + L1MC4 LINE L1 5678 5922 -1886 1976 119 17 3 chr11 68662993 68663287 -82120266 - AluSx SINE Alu -14 298 1 1893 155 3 7 chr11 68663291 68663587 -82119966 - AluJb SINE Alu -17 295 1 38 22 0 0 chr11 68664080 68664125 -82119428 + AT_rich Low_complexity Low_complexity 1 45 0 1479 129 54 58 chr11 68664145 68664439 -82119114 + AluSq SINE Alu 12 304 -9 329 221 44 0 chr11 68664471 68664539 -82119014 - L1MCa LINE L1 -4350 2076 2006 * 398 276 23 0 chr11 68664526 68664613 -82118940 - L1MC4 LINE L1 -1339 6703 6615 392 322 0 0 chr11 68664534 68664624 -82118929 + L1MC4 LINE L1 6614 6703 -1339 * 314 266 0 0 chr11 68664640 68664704 -82118849 - L1MC4 LINE L1 -1339 6703 6640 2139 112 0 0 chr11 68715641 68715936 -82067617 + AluSx SINE Alu 6 300 -12 2258 92 0 13 chr11 68715937 68716242 -82067311 + AluY SINE Alu 1 301 -10 1451 197 14 7 chr11 68716250 68716534 -82067019 + AluJb SINE Alu 11 296 -16 1950 155 0 3 chr11 68716534 68716843 -82066710 + AluSx SINE Alu 1 308 -4 2115 90 35 3 chr11 68716846 68717135 -82066418 + AluSx SINE Alu 1 298 -14 2035 220 30 23 chr11 68717135 68717698 -82065855 + L1ME1 LINE L1 5596 6162 -4 2050 147 0 0 chr11 68717887 68718193 -82065360 - AluJo SINE Alu -2 310 5 621 294 18 55 chr11 68718955 68719269 -82064284 + L1ME LINE L1 5566 5868 -253 2372 69 0 3 chr11 68719334 68719639 -82063914 - AluSg SINE Alu -6 304 1 21 36 0 0 chr11 68719868 68719896 -82063657 + AT_rich Low_complexity Low_complexity 1 28 0 345 258 83 17 chr11 68720539 68720659 -82062894 - MIR SINE MIR -87 175 48 659 304 21 0 chr11 68720699 68720893 -82062660 + MIR SINE MIR 46 243 -19 2257 104 3 0 chr11 68720994 68721301 -82062252 + AluSp SINE Alu 2 309 -4 194 239 43 0 chr11 68721376 68721422 -82062131 - MIR SINE MIR -63 145 98 602 242 181 29 chr11 68722091 68722405 -82061148 + L2 LINE L2 2189 2550 -764 2272 87 7 0 chr11 68722407 68722716 -82060837 - AluSx SINE Alu -1 311 1 820 161 0 40 chr11 68722943 68723092 -82060461 - AluJb SINE Alu -10 302 160 2229 94 0 13 chr11 68723133 68723442 -82060111 - AluSx SINE Alu -6 306 2 1992 94 0 4 chr11 68725468 68725735 -82057818 - AluSx SINE Alu -12 300 35 907 132 14 0 chr11 68726037 68726181 -82057372 - AluSg/x SINE Alu -10 302 157 2024 125 27 0 chr11 68726816 68727111 -82056442 + AluSx SINE Alu 1 303 -9 2344 53 0 13 chr11 68727634 68727933 -82055620 - AluY SINE Alu -16 295 1 1348 158 0 0 chr11 68728334 68728543 -82055010 - AluJb SINE Alu -14 298 90 294 158 146 73 chr11 68728544 68728626 -82054927 - L2 LINE L2 -4 3309 3222 1705 81 5 5 chr11 68730501 68730724 -82052829 + L1PB1 LINE L1 5928 6150 -1 303 285 20 93 chr11 68731104 68731255 -82052298 + L2 LINE L2 2916 3055 -217 2040 112 23 7 chr11 68731331 68731634 -82051919 - AluSx SINE Alu -4 308 1 2427 71 3 0 chr11 68731870 68732180 -82051373 + AluY SINE Alu 1 311 0 1410 274 160 19 chr11 68732358 68732997 -82050556 - L2 LINE L2 -862 2452 1698 2084 119 0 3 chr11 68732997 68733307 -82050246 - AluSx SINE Alu -3 309 1 1410 274 160 19 chr11 68733307 68733393 -82050160 - L2 LINE L2 -1616 1698 1625 638 277 144 17 chr11 68733689 68733981 -82049572 + L2 LINE L2 2966 3294 -19 208 313 50 0 chr11 68734746 68734826 -82048727 + MIR SINE MIR 101 184 -78 1129 111 0 23 chr11 68734899 68735071 -82048482 + AluJb SINE Alu 134 301 -11 2243 75 0 3 chr11 68735073 68735366 -82048187 + AluY SINE Alu 1 292 -19 2343 60 0 10 chr11 68736958 68737257 -82046296 - AluY SINE Alu -15 296 1 2108 105 3 3 chr11 68737293 68737588 -82045965 - AluSx SINE Alu -17 295 1 584 253 72 79 chr11 68737650 68737783 -82045770 - L2 LINE L2 -123 3190 3058 2073 104 0 0 chr11 68737783 68738160 -82045393 + AluSx SINE Alu 3 379 0 584 253 72 79 chr11 68738160 68738197 -82045356 - L2 LINE L2 -255 3058 3022 1592 124 22 96 chr11 68738197 68738348 -82045205 + AluSx SINE Alu 1 117 -195 2162 109 10 10 chr11 68738348 68738660 -82044893 + AluSx SINE Alu 1 312 0 1592 124 22 96 chr11 68738660 68738831 -82044722 + AluSx SINE Alu 117 299 -13 584 253 72 79 chr11 68738831 68739082 -82044471 - L2 LINE L2 -291 3022 2771 409 74 0 4 chr11 68739172 68739257 -82044296 + L1MA2 LINE L1 5240 5323 -823 6075 94 31 29 chr11 68739267 68739316 -82044237 + L1MA2 LINE L1 5286 5333 -971 1454 157 23 102 chr11 68739316 68739659 -82043894 + AluYb8 SINE Alu 3 318 0 6075 94 31 29 chr11 68739659 68740625 -82042928 + L1MA2 LINE L1 5333 6304 0 942 241 129 21 chr11 68740636 68740976 -82042577 - L2 LINE L2 -757 2557 2181 183 329 60 60 chr11 68740980 68741077 -82042476 + L2 LINE L2 2912 3011 -261 2254 63 3 7 chr11 68741077 68741376 -82042177 - AluY SINE Alu -13 298 1 183 329 60 60 chr11 68741376 68741445 -82042108 + L2 LINE L2 3010 3078 -194 2273 96 3 0 chr11 68741448 68741749 -82041804 + AluSp SINE Alu 1 302 -11 1198 179 35 107 chr11 68741875 68742194 -82041359 - AluJo SINE Alu -6 296 1 2294 53 3 20 chr11 68742221 68742525 -82041028 + AluY SINE Alu 1 299 -12 885 185 0 0 chr11 68742534 68742691 -82040862 + FRAM SINE Alu 1 157 -19 1007 235 75 77 chr11 68747036 68747299 -82036254 + LTR37B LTR ERV1 41 303 -165 2072 134 20 7 chr11 68747299 68747605 -82035948 - AluSx SINE Alu -2 310 1 1007 235 75 77 chr11 68747605 68747696 -82035857 + LTR37B LTR ERV1 303 396 -72 1427 155 38 73 chr11 68747696 68748013 -82035540 - AluJb SINE Alu -6 306 1 1007 235 75 77 chr11 68748013 68748086 -82035467 + LTR37B LTR ERV1 396 468 0 318 356 75 56 chr11 68748257 68748345 -82035208 + L1MC4 LINE L1 1978 2063 -6259 2245 94 0 10 chr11 68748345 68748516 -82035037 - AluSp SINE Alu -9 304 136 2251 98 3 0 chr11 68748516 68748821 -82034732 - AluSg SINE Alu -4 306 1 2245 94 0 10 chr11 68748821 68748956 -82034597 - AluSp SINE Alu -177 136 1 318 356 75 56 chr11 68748956 68749008 -82034545 + L1MC4 LINE L1 2063 2113 -6209 2009 134 0 0 chr11 68749008 68749300 -82034253 + AluSx SINE Alu 6 297 -15 318 356 75 56 chr11 68749300 68749342 -82034211 + L1MC4 LINE L1 2113 6984 -1338 1386 167 49 52 chr11 68749722 68749916 -82033637 - AluJo SINE Alu -7 305 111 1983 105 17 10 chr11 68749916 68750211 -82033342 + AluSp SINE Alu 1 297 -16 1386 167 49 52 chr11 68750211 68750322 -82033231 - AluJo SINE Alu -201 111 1 184 333 65 0 chr11 68750419 68750512 -82033041 + MIR SINE MIR 52 150 -112 237 323 21 0 chr11 68750804 68750897 -82032656 + MIR SINE MIR 49 143 -65 187 312 0 65 chr11 68752416 68752509 -82031044 + MIR SINE MIR 110 196 -66 207 340 31 10 chr11 68752556 68752653 -82030900 - MIR3 SINE MIR 0 208 110 258 103 0 0 chr11 68753372 68753411 -82030142 + tRNA-Cys-TGC tRNA tRNA 6 44 -31 241 404 9 0 chr11 68754827 68754936 -82028617 - MIR SINE MIR -62 146 37 615 242 0 0 chr11 68755254 68755378 -82028175 - L2 LINE L2 -1 3312 3189 24 0 0 0 chr11 68756231 68756255 -82027298 + GC_rich Low_complexity Low_complexity 1 24 0 320 354 101 24 chr11 68757327 68757500 -82026053 - L2 LINE L2 -108 3164 3006 2207 110 3 3 chr11 68757500 68757808 -82025745 + AluSx SINE Alu 1 308 -4 320 354 101 24 chr11 68757808 68758107 -82025446 - L2 LINE L2 -266 3006 2655 191 236 167 86 chr11 68758229 68758307 -82025246 + L2 LINE L2 3040 3110 -203 1486 140 85 52 chr11 68758307 68758579 -82024974 - AluJb SINE Alu -31 281 1 191 236 167 86 chr11 68758579 68758674 -82024879 + L2 LINE L2 3110 3227 -86 2201 98 0 10 chr11 68758823 68759120 -82024433 - AluSx SINE Alu -18 294 1 893 295 182 0 chr11 68759121 68759538 -82024015 + L2 LINE L2 2820 3312 -1 183 271 17 0 chr11 68759559 68759618 -82023935 - L2 LINE L2 -631 2683 2624 1028 156 9 49 chr11 68759625 68759850 -82023703 + AluJo SINE Alu 83 298 -14 2540 34 0 0 chr11 68760073 68760371 -82023182 + AluY SINE Alu 1 298 -13 2192 95 3 0 chr11 68762962 68763257 -82020296 - AluSx SINE Alu -16 296 1 1721 167 10 10 chr11 68763848 68764154 -82019399 + AluJb SINE Alu 1 306 -6 199 318 135 0 chr11 68764392 68764540 -82019013 + L2 LINE L2 2129 2296 -1018 1949 143 3 3 chr11 68764847 68765147 -82018406 - AluSq SINE Alu -12 301 2 2303 89 3 3 chr11 68765180 68765483 -82018070 - AluSp SINE Alu -10 303 1 1057 163 0 0 chr11 68765498 68765670 -82017883 - AluJb SINE Alu -4 308 137 842 159 40 35 chr11 68765688 68765889 -82017664 + L1MB4 LINE L1 5627 5828 -352 1902 102 0 0 chr11 68765890 68766146 -82017407 + AluSq SINE Alu 1 256 -57 387 214 48 10 chr11 68766493 68766596 -82016957 + LTR67 LTR ERVL 448 554 -3 764 217 91 54 chr11 68766846 68767018 -82016535 + MIR SINE MIR 20 203 -59 2345 81 3 3 chr11 68767018 68767327 -82016226 + AluSq SINE Alu 1 309 -4 764 217 91 54 chr11 68767327 68767375 -82016178 + MIR SINE MIR 203 248 -14 180 316 0 38 chr11 68768228 68768307 -82015246 + L2 LINE L2 3234 3309 -4 258 191 22 90 chr11 68768579 68768668 -82014885 - MER53 DNA DNA 0 189 107 865 100 8 1 chr11 68768670 68768921 -82014632 + AluSg SINE Alu 21 307 -5 276 246 0 0 chr11 68768933 68768998 -82014555 - MER53 DNA DNA -43 146 82 525 180 246 12 chr11 68769007 68769021 -82014532 + MER46A DNA MER2_type 31 40 -2691 2505 62 0 3 chr11 68769021 68769328 -82014225 + AluY SINE Alu 1 306 -5 525 180 246 12 chr11 68769328 68769480 -82014073 + MER46A DNA MER2_type 40 236 0 1880 140 7 23 chr11 68769481 68769788 -82013765 + AluJb SINE Alu 3 304 -8 321 169 0 0 chr11 68769788 68769847 -82013706 + MER53 DNA DNA 131 189 0 2038 75 26 0 chr11 68771122 68771388 -82012165 - AluSp SINE Alu -40 273 1 977 106 0 0 chr11 68771391 68771523 -82012030 - AluSp SINE Alu -181 132 1 1108 183 78 81 chr11 68771679 68771798 -82011755 - MER58B DNA MER1_type -2079 341 223 2327 92 0 3 chr11 68771798 68772101 -82011452 - AluSq SINE Alu -11 302 1 1108 183 78 81 chr11 68772101 68772303 -82011250 - MER58B DNA MER1_type -2197 223 21 546 174 124 8 chr11 68772530 68772651 -82010902 + AluJb SINE Alu 168 302 -10 787 188 0 0 chr11 68772734 68772867 -82010686 - FLAM_C SINE Alu 0 133 1 197 289 19 0 chr11 68772869 68772921 -82010632 - MER5A DNA MER1_type -1 188 136 1309 127 148 4 chr11 68772949 68773077 -82010476 - AluJo SINE Alu -16 296 188 2193 72 3 26 chr11 68773077 68773383 -82010170 - AluSg SINE Alu -11 299 1 1309 127 148 4 chr11 68773383 68773498 -82010055 - AluJo SINE Alu -124 188 18 248 221 132 15 chr11 68773626 68773694 -82009859 - MIR SINE MIR -72 190 115 747 224 26 0 chr11 68775199 68775355 -82008198 - AluJb SINE Alu -16 296 137 1837 170 0 20 chr11 68775403 68775703 -82007850 + AluJb SINE Alu 1 294 -18 2210 118 3 0 chr11 68775734 68776040 -82007513 + AluSx SINE Alu 1 307 -5 183 156 0 0 chr11 68776132 68776164 -82007389 + CT-rich Low_complexity Low_complexity 3 34 0 220 272 12 37 chr11 68776676 68776741 -82006812 - L2 LINE L2 -1242 2072 2008 1576 123 9 0 chr11 68776741 68776968 -82006585 + AluSx SINE Alu 1 229 -83 220 272 12 37 chr11 68776968 68776983 -82006570 - L2 LINE L2 -1306 2008 1994 326 315 108 23 chr11 68777042 68777343 -82006210 - L2 LINE L2 -449 2865 1451 1717 165 13 23 chr11 68777346 68777655 -82005898 + AluJo SINE Alu 1 306 -6 2191 105 0 0 chr11 68777655 68777967 -82005586 + AluSx SINE Alu 1 312 0 888 192 13 3 chr11 68777967 68778365 -82005188 + L1M4 LINE L1 5198 5714 -470 2026 111 45 0 chr11 68778542 68778831 -82004722 - AluSx SINE Alu -10 302 1 1562 156 0 44 chr11 68779385 68779655 -82003898 + AluJo SINE Alu 2 259 -53 600 176 0 0 chr11 68779655 68779746 -82003807 - AluSg/x SINE Alu -83 229 139 256 235 356 0 chr11 68780273 68780388 -82003165 - L1MC/D LINE L1 -2217 5591 5436 922 339 143 60 chr11 68780388 68780427 -82003126 - L1MC/D LINE L1 -1870 4276 4242 2003 126 3 43 chr11 68780427 68780753 -82002800 - AluSq SINE Alu 0 313 1 922 339 143 60 chr11 68780753 68781642 -82001911 - L1MC/D LINE L1 -1904 4242 3265 2191 70 38 0 chr11 68781642 68781929 -82001624 + AluSx SINE Alu 1 298 -14 922 339 143 60 chr11 68781929 68781947 -82001606 - L1MC/D LINE L1 -2881 3265 3250 2180 152 32 94 chr11 68781987 68782488 -82001065 - MER21A LTR ERV1 0 931 462 536 129 24 0 chr11 68782489 68782574 -82000979 + AluY SINE Alu 214 300 -11 1187 145 4 26 chr11 68782767 68782995 -82000558 - THE1C LTR MaLR 0 375 153 2339 91 0 0 chr11 68782995 68783293 -82000260 + AluY SINE Alu 2 299 -12 260 274 218 53 chr11 68783309 68783685 -81999868 - L2 LINE L2 -2568 746 309 470 192 0 0 chr11 68785280 68785353 -81998200 - AluJ/FLAM SINE Alu -234 78 6 1018 95 57 13 chr11 68787295 68787532 -81996021 + AluSq SINE Alu 149 392 0 1551 103 4 34 chr11 68789061 68789324 -81994229 - AluSq SINE Alu -58 255 1 705 171 94 0 chr11 68789336 68789506 -81994047 - L1MB3 LINE L1 -7 6176 5991 2231 67 0 3 chr11 68789528 68789839 -81993714 - AluY SINE Alu 0 310 1 1537 199 12 12 chr11 68789839 68790155 -81993398 - MLT1F LTR MaLR -7 535 216 362 363 29 35 chr11 68790175 68790486 -81993067 - L2 LINE L2 -2130 1184 876 318 106 0 0 chr11 68791161 68791208 -81992345 + (CA)n Simple_repeat Simple_repeat 1 47 0 262 300 0 0 chr11 68791644 68791714 -81991839 + (TGGA)n Simple_repeat Simple_repeat 1 70 0 2057 112 3 3 chr11 68792025 68792320 -81991233 + AluSx SINE Alu 6 300 -12 244 250 50 38 chr11 68792321 68792401 -81991152 - MIR SINE MIR -142 120 40 284 281 39 39 chr11 68792456 68792584 -81990969 + MIR3 SINE MIR 3 130 -78 181 298 289 19 chr11 68794117 68794221 -81989332 + MIR3 SINE MIR 71 202 -6 1940 125 10 10 chr11 68794315 68794612 -81988941 + AluSx SINE Alu 1 297 -15 2007 115 0 24 chr11 68794622 68794936 -81988617 + AluSx SINE Alu 5 311 0 705 171 94 0 chr11 68794958 68795128 -81988425 + L1MB3 LINE L1 5991 6176 -7 2216 104 3 0 chr11 68795140 68795439 -81988114 + AluSq SINE Alu 1 300 -13 219 197 13 26 chr11 68795461 68795537 -81988016 + GA-rich Low_complexity Low_complexity 3 77 0 1808 142 55 50 chr11 68795554 68795855 -81987698 - L1MB4 LINE L1 -77 6103 5798 1978 100 0 112 chr11 68795855 68796204 -81987349 - AluSx SINE Alu -2 310 1 1808 142 55 50 chr11 68796204 68796319 -81987234 - L1MB4 LINE L1 -382 5798 5685 377 252 39 39 chr11 68796324 68796479 -81987074 - L1MC/D LINE L1 -1988 5820 5666 180 323 61 10 chr11 68798307 68798406 -81985147 - L2 LINE L2 -24 3248 3145 248 288 122 35 chr11 68798532 68798713 -81984840 - L2 LINE L2 -438 2876 2659 2213 97 0 0 chr11 68798713 68799003 -81984550 + AluSg SINE Alu 1 290 -20 248 288 122 35 chr11 68799003 68799109 -81984444 - L2 LINE L2 -655 2659 2564 482 174 0 0 chr11 68799284 68799370 -81984183 - FLAM_A SINE Alu 0 142 57 665 150 36 36 chr11 68799409 68799549 -81984004 - L1MB3 LINE L1 -3 6180 6041 263 306 16 8 chr11 68799549 68799673 -81983880 - L1M4c LINE L1 -4206 2178 2054 1555 178 34 20 chr11 68799695 68799987 -81983566 + AluJb SINE Alu 3 298 -14 1821 126 11 11 chr11 68799989 68800275 -81983278 - AluJo SINE Alu -24 288 3 556 248 157 0 chr11 68800275 68800485 -81983068 - L1MC4 LINE L1 -338 7704 7462 1742 171 0 0 chr11 68800546 68800827 -81982726 + AluJb SINE Alu 2 282 -30 563 103 13 0 chr11 68800828 68800906 -81982647 - AluSc SINE Alu -53 256 178 688 222 56 0 chr11 68800963 68801107 -81982446 + MIR SINE MIR 34 185 -77 183 100 0 0 chr11 68802525 68802555 -81980998 + (CA)n Simple_repeat Simple_repeat 2 31 0 799 148 8 0 chr11 68802556 68802678 -81980875 - FLAM_C SINE Alu -20 123 1 415 262 7 54 chr11 68802725 68802874 -81980679 - MER104 DNA Tc2 -3 177 36 205 356 56 11 chr11 68803027 68803117 -81980436 - MIR SINE MIR -167 95 2 * 376 239 111 7 chr11 68803117 68803258 -81980295 + MIR SINE MIR 44 199 -63 215 244 158 12 chr11 68804161 68804243 -81979310 - MIR SINE MIR -73 135 42 201 320 39 39 chr11 68805885 68805988 -81977565 - MIR SINE MIR -68 140 38 1218 133 31 15 chr11 68806224 68806420 -81977133 - AluSg/x SINE Alu -4 306 108 792 158 0 8 chr11 68806443 68806570 -81976983 + FLAM_C SINE Alu 5 130 -3 294 293 15 90 chr11 68806594 68806727 -81976826 + MIR SINE MIR 57 179 -83 1444 181 72 14 chr11 68806746 68807022 -81976531 + AluJo SINE Alu 3 294 -8 1932 145 3 3 chr11 68807024 68807335 -81976218 + AluSx SINE Alu 1 311 -1 2288 39 28 3 chr11 68807471 68807756 -81975797 + AluSg SINE Alu 1 292 -18 22 35 0 0 chr11 68808038 68808067 -81975486 + GC_rich Low_complexity Low_complexity 1 29 0 1289 160 61 73 chr11 68809151 68809494 -81974059 - MER58B DNA MER1_type 0 341 3 2135 107 0 3 chr11 68809564 68809854 -81973699 + AluSx SINE Alu 1 289 -23 184 237 0 0 chr11 68810306 68810344 -81973209 - MIR3 SINE MIR -54 154 117 2438 78 0 0 chr11 68810346 68810655 -81972898 + AluSg SINE Alu 2 310 0 1292 91 43 0 chr11 68810662 68810848 -81972705 + AluSq SINE Alu 120 313 0 205 88 29 0 chr11 68810869 68810903 -81972650 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1886 160 6 16 chr11 68812350 68812663 -81970890 + AluJo SINE Alu 1 310 -2 1991 118 0 10 chr11 68812893 68813189 -81970364 + AluSx SINE Alu 1 293 -19 1912 130 27 0 chr11 68813191 68813484 -81970069 + AluSx SINE Alu 1 301 -11 750 181 0 0 chr11 68813485 68813601 -81969952 - AluJo/FLAM SINE Alu -195 117 2 336 120 0 0 chr11 68814337 68814387 -81969166 - Alu SINE Alu -250 50 1 923 174 51 0 chr11 68814416 68814594 -81968959 - MER53 DNA DNA 0 189 3 207 0 0 0 chr11 68815330 68815353 -81968200 + (GA)n Simple_repeat Simple_repeat 1 23 0 213 240 20 0 chr11 68817405 68817455 -81966098 + MIR SINE MIR 70 120 -88 287 167 0 0 chr11 68817672 68817732 -81965821 - LTR37B LTR ERV1 -166 302 243 1998 138 0 0 chr11 68817757 68818048 -81965505 + AluSx SINE Alu 1 291 -21 30 0 0 0 chr11 68818048 68818078 -81965475 + AT_rich Low_complexity Low_complexity 1 30 0 809 154 0 54 chr11 68818455 68818604 -81964949 - FLAM_C SINE Alu 0 143 3 2277 93 0 0 chr11 68818908 68819208 -81964345 - AluY SINE Alu -11 300 1 206 313 125 9 chr11 68819746 68819858 -81963695 + MIR SINE MIR 48 172 -90 610 320 91 0 chr11 68820336 68820555 -81962998 - L2 LINE L2 -5 3308 3070 844 171 0 0 chr11 68820555 68820695 -81962858 - FLAM_C SINE Alu -3 140 1 928 265 86 2 chr11 68820696 68821125 -81962428 - L2 LINE L2 -235 3078 2616 2414 75 3 0 chr11 68821125 68821430 -81962123 + AluSp SINE Alu 1 306 -7 2180 212 31 42 chr11 68822537 68822669 -81960884 - L1M4 LINE L1 -1122 5024 4892 2227 114 0 3 chr11 68822669 68822977 -81960576 + AluSx SINE Alu 1 307 -5 2180 212 31 42 chr11 68822977 68823029 -81960524 - L1M4 LINE L1 -1254 4892 4841 2116 121 3 0 chr11 68823029 68823326 -81960227 + AluY SINE Alu 2 299 -12 2180 212 31 42 chr11 68823326 68823434 -81960119 - L1M4 LINE L1 -1305 4841 4733 1996 121 0 62 chr11 68823434 68823757 -81959796 - AluSx SINE Alu -9 303 1 2180 212 31 42 chr11 68823757 68824080 -81959473 - L1M4 LINE L1 -1413 4733 4414 725 167 0 0 chr11 68824083 68824197 -81959356 - AluSg/x SINE Alu -15 297 184 1364 123 0 0 chr11 68824297 68824484 -81959069 - AluSq SINE Alu -126 187 1 837 59 0 0 chr11 68824510 68824612 -81958941 + AluY SINE Alu 6 107 -204 233 235 132 15 chr11 68825487 68825555 -81957998 + MIR SINE MIR 115 190 -72 716 179 62 12 chr11 68825683 68825845 -81957708 + AluJb SINE Alu 18 187 -125 212 280 254 30 chr11 68826271 68826535 -81957018 - L2 LINE L2 -11 3261 2939 402 346 120 4 chr11 68826542 68826776 -81956777 - MIR SINE MIR -1 261 1 1057 227 0 5 chr11 68829630 68829828 -81953725 - AluSc SINE Alu -111 198 2 1205 178 0 30 chr11 68829828 68830058 -81953495 + THE1C LTR MaLR 153 375 0 1890 105 0 0 chr11 68830355 68830612 -81952941 - AluSc SINE Alu -52 257 1 201 147 0 0 chr11 68830623 68830657 -81952896 + (A)n Simple_repeat Simple_repeat 1 34 0 914 113 15 0 chr11 68830960 68831093 -81952460 + AluSq/x SINE Alu 1 135 -177 1772 145 9 28 chr11 68831093 68831411 -81952142 + AluSx SINE Alu 1 312 0 714 139 70 6 chr11 68831449 68831534 -81952019 - Charlie5 DNA MER1_type 0 2624 2546 2182 116 0 3 chr11 68831534 68831837 -81951716 - AluSg SINE Alu -8 302 1 714 139 70 6 chr11 68831837 68831923 -81951630 - Charlie5 DNA MER1_type -78 2546 2442 2026 132 7 3 chr11 68831924 68832234 -81951319 + AluSx SINE Alu 1 311 -1 376 77 19 0 chr11 68832280 68832332 -81951221 - Alu SINE Alu -248 53 1 296 141 203 0 chr11 68832377 68832441 -81951112 + MIR3 SINE MIR 112 188 -20 1973 95 26 0 chr11 68833191 68833464 -81950089 - AluSx SINE Alu -18 294 15 1645 172 10 13 chr11 68833777 68834085 -81949468 + AluJb SINE Alu 2 308 -4 290 303 56 42 chr11 68834085 68834227 -81949326 - MIR SINE MIR -72 190 47 1883 135 10 7 chr11 68834297 68834593 -81948960 + AluSx SINE Alu 1 297 -15 2067 61 11 7 chr11 68834666 68834946 -81948607 - AluY SINE Alu -30 281 1 1028 156 9 49 chr11 68835169 68835394 -81948159 - AluJo SINE Alu -14 298 83 183 271 17 0 chr11 68835401 68835460 -81948093 + L2 LINE L2 2624 2683 -631 893 295 182 0 chr11 68835481 68835898 -81947655 - L2 LINE L2 -1 3312 2820 2194 91 0 13 chr11 68835899 68836197 -81947356 + AluSx SINE Alu 1 294 -18 204 229 0 108 chr11 68836346 68836429 -81947124 - L2 LINE L2 -86 3227 3154 1400 136 89 54 chr11 68836441 68836699 -81946854 + AluJb SINE Alu 1 267 -45 572 158 12 0 chr11 68836800 68836882 -81946671 - AluY SINE Alu -226 84 2 180 0 0 0 chr11 68836987 68837007 -81946546 + (T)n Simple_repeat Simple_repeat 1 20 0 789 137 8 15 chr11 68837022 68837153 -81946400 - FLAM_C SINE Alu -12 131 2 290 197 160 49 chr11 68838615 68838756 -81944797 + MIR SINE MIR 16 160 -57 1931 130 3 0 chr11 68838849 68839133 -81944420 + AluSx SINE Alu 6 290 -22 2202 88 0 23 chr11 68839610 68839917 -81943636 + AluSg1 SINE Alu 1 300 -9 836 166 22 0 chr11 68840428 68840567 -81942986 + AluJb SINE Alu 1 142 -170 1636 116 0 0 chr11 68840567 68840791 -81942762 + AluSq SINE Alu 1 224 -89 649 225 39 0 chr11 68841168 68841297 -81942256 + LTR5 LTR ERVK 1 134 -835 2541 47 0 0 chr11 68841368 68841668 -81941885 - AluY SINE Alu -11 300 1 3039 198 32 58 chr11 68841674 68842494 -81941059 + LTR5 LTR ERVK 172 969 0 2383 45 7 3 chr11 68842748 68843039 -81940514 - AluY SINE Alu -19 292 1 467 257 136 7 chr11 68843094 68843234 -81940319 + MER91A DNA MER1_type 8 165 -31 222 244 70 23 chr11 68843253 68843339 -81940214 + L2 LINE L2 2957 3046 -226 561 312 13 7 chr11 68844218 68844422 -81939131 - MIR SINE MIR -19 243 38 694 210 140 0 chr11 68844437 68844623 -81938930 + MIR SINE MIR 7 218 -44 269 248 177 35 chr11 68844673 68844786 -81938767 + L2 LINE L2 3129 3257 -15 2228 112 0 3 chr11 68844798 68845111 -81938442 - AluSx SINE Alu 0 312 1 842 175 76 33 chr11 68845924 68846135 -81937418 + L1MD3 LINE L1 7727 7946 -49 2454 57 0 0 chr11 68846141 68846437 -81937116 - AluY SINE Alu -15 296 1 1164 111 0 18 chr11 68846439 68846610 -81936943 - AluJb SINE Alu -11 301 134 208 313 50 0 chr11 68846683 68846763 -81936790 - MIR SINE MIR -78 184 101 638 277 144 17 chr11 68847528 68847820 -81935733 - L2 LINE L2 -19 3294 2966 1446 273 160 18 chr11 68848116 68848202 -81935351 + L2 LINE L2 1625 1697 -1617 2122 113 0 3 chr11 68848202 68848512 -81935041 + AluSx SINE Alu 1 309 -3 1446 273 160 18 chr11 68848512 68849150 -81934403 + L2 LINE L2 1697 2452 -862 355 169 52 0 chr11 68849151 68849228 -81934325 + L2 LINE L2 2558 2638 -676 476 241 210 11 chr11 68849238 68849479 -81934074 + L2 LINE L2 2740 3046 -267 2019 128 7 3 chr11 68849479 68849776 -81933777 - AluSq SINE Alu -15 298 1 476 241 210 11 chr11 68849776 68849821 -81933732 + L2 LINE L2 3046 3081 -232 857 119 0 0 chr11 68849943 68850061 -81933492 - FLAM_C SINE Alu -15 118 1 298 247 165 0 chr11 68850148 68850245 -81933308 + L2 LINE L2 3200 3312 -1 2167 92 0 13 chr11 68850283 68850588 -81932965 + AluSq SINE Alu 1 301 -12 885 185 0 0 chr11 68850597 68850754 -81932799 + FRAM SINE Alu 1 157 -19 198 176 0 0 chr11 68852145 68852179 -81931374 - MIR SINE MIR -62 146 113 358 131 16 0 chr11 68852181 68852242 -81931311 + L2 LINE L2 3252 3313 0 215 299 116 48 chr11 68852450 68852597 -81930956 - MIR SINE MIR -42 220 64 2381 62 7 3 chr11 68852832 68853138 -81930415 + AluSg SINE Alu 1 307 -3 355 290 104 4 chr11 68853151 68853332 -81930221 + L1MC/D LINE L1 5617 5818 -303 921 131 14 7 chr11 68853342 68853487 -81930066 + AluJo SINE Alu 1 146 -166 387 146 0 0 chr11 68853488 68853543 -81930010 + AluSc SINE Alu 194 248 -51 830 216 116 0 chr11 68853543 68853733 -81929820 + AluJb SINE Alu 85 296 -16 491 253 140 44 chr11 68853861 68853926 -81929627 - MER112 DNA MER1_type -6 254 197 370 137 68 0 chr11 68853926 68853999 -81929554 + MER116 DNA Mariner 2 79 -1 491 253 140 44 chr11 68853999 68854162 -81929391 - MER112 DNA MER1_type -63 197 4 2061 125 3 0 chr11 68854213 68854510 -81929043 - AluSx SINE Alu -14 298 1 27 0 0 0 chr11 68854624 68854651 -81928902 + AT_rich Low_complexity Low_complexity 1 27 0 2421 57 0 3 chr11 68854704 68855004 -81928549 - AluY SINE Alu -12 299 1 1703 138 51 7 chr11 68855029 68855304 -81928249 - AluJo SINE Alu -25 287 1 2142 112 16 0 chr11 68855423 68855727 -81927826 - AluSq SINE Alu -4 309 1 23 0 0 0 chr11 68855864 68855887 -81927666 + AT_rich Low_complexity Low_complexity 1 23 0 1697 178 0 3 chr11 68856085 68856407 -81927146 - AluJb SINE Alu 0 321 1 372 59 0 0 chr11 68856610 68856661 -81926892 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 207 0 0 0 chr11 68856688 68856711 -81926842 + (TG)n Simple_repeat Simple_repeat 2 24 0 1130 145 0 6 chr11 68856711 68856890 -81926663 - AluJb SINE Alu -14 298 121 1910 116 6 50 chr11 68856917 68857235 -81926318 + AluSx SINE Alu 1 304 -8 909 250 128 12 chr11 68857547 68857867 -81925686 - MLT1K LTR MaLR -94 494 138 674 183 0 35 chr11 68857869 68857984 -81925569 - AluJb SINE Alu -200 112 2 2167 105 7 0 chr11 68858275 68858570 -81924983 - AluSx SINE Alu -15 297 1 187 212 0 0 chr11 68858799 68858832 -81924721 - L3 LINE CR1 -1480 97 65 477 230 58 107 chr11 68859077 68859166 -81924387 + L2 LINE L2 2602 2694 -620 2139 119 0 0 chr11 68859166 68859461 -81924092 - AluSx SINE Alu -17 295 1 477 230 58 107 chr11 68859461 68859478 -81924075 + L2 LINE L2 2694 2710 -604 2131 124 0 6 chr11 68859478 68859792 -81923761 - AluSx SINE Alu 0 312 1 1453 142 138 8 chr11 68859794 68860054 -81923499 - AluSx SINE Alu -18 294 1 477 230 58 107 chr11 68860054 68860204 -81923349 + L2 LINE L2 2711 2849 -465 597 322 48 34 chr11 68860332 68860627 -81922926 + L2 LINE L2 3014 3312 -1 2086 102 0 40 chr11 68860814 68861118 -81922435 + AluSx SINE Alu 1 292 -20 1861 136 0 20 chr11 68861348 68861534 -81922019 - AluJb SINE Alu -12 300 121 225 0 0 0 chr11 68861534 68861559 -81921994 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 1861 136 0 20 chr11 68861559 68861667 -81921886 - AluJb SINE Alu -191 121 12 272 299 60 17 chr11 68861671 68861788 -81921765 - MIR3 SINE MIR -47 161 40 279 276 179 21 chr11 68861992 68862137 -81921416 + MIR3 SINE MIR 21 188 -20 431 279 76 19 chr11 68862430 68862588 -81920965 - MIR SINE MIR -49 213 47 1898 127 31 0 chr11 68862950 68863241 -81920312 - AluSg SINE Alu -10 300 1 1394 259 102 18 chr11 68863613 68864054 -81919499 + MLT1K LTR MaLR 30 507 -81 2116 112 0 3 chr11 68864155 68864451 -81919102 + AluSg SINE Alu 1 295 -15 2023 141 3 3 chr11 68864451 68864763 -81918790 + AluSx SINE Alu 1 312 0 203 146 24 0 chr11 68864763 68864804 -81918749 + GA-rich Low_complexity Low_complexity 1 42 0 207 154 330 22 chr11 68864869 68864960 -81918593 - MIR SINE MIR -5 257 139 2196 82 27 0 chr11 68864960 68865252 -81918301 + AluSx SINE Alu 1 300 -12 2139 110 0 7 chr11 68865254 68865555 -81917998 + AluSx SINE Alu 1 299 -13 210 286 13 26 chr11 68865762 68865839 -81917714 - L2 LINE L2 -5 3308 3233 228 243 118 105 chr11 68865942 68866061 -81917492 + MIR3 SINE MIR 13 136 -72 1579 237 69 9 chr11 68866061 68866411 -81917142 + MLT1A2 LTR MaLR 4 374 0 228 243 118 105 chr11 68866411 68866443 -81917110 + MIR3 SINE MIR 136 166 -42 207 179 0 0 chr11 68866489 68866528 -81917025 + CT-rich Low_complexity Low_complexity 1 39 0 225 65 0 0 chr11 68866709 68866740 -81916813 + (CA)n Simple_repeat Simple_repeat 1 31 0 336 260 150 16 chr11 68867358 68867485 -81916068 - MER117 DNA MER1_type -53 144 1 1864 165 0 13 chr11 68867701 68868017 -81915536 - AluJo SINE Alu 0 312 1 285 228 63 0 chr11 68868024 68868103 -81915450 - MIR SINE MIR -106 156 73 329 311 69 23 chr11 68868252 68868427 -81915126 - MIR SINE MIR -62 200 15 297 242 185 13 chr11 68868885 68869042 -81914511 + MIR3 SINE MIR 8 191 -17 1888 142 0 0 chr11 68869161 68869442 -81914111 + AluSx SINE Alu 14 294 -18 2105 76 14 17 chr11 68869444 68869725 -81913828 + AluSx SINE Alu 1 305 -7 295 29 0 0 chr11 68869725 68869760 -81913793 + (TAAAA)n Simple_repeat Simple_repeat 4 145 0 456 291 54 7 chr11 68870168 68870316 -81913237 + L2 LINE L2 3159 3313 0 2028 108 0 44 chr11 68870545 68870861 -81912692 + AluSx SINE Alu 1 302 -10 2006 128 3 7 chr11 68871607 68871903 -81911650 + AluJo SINE Alu 1 295 -17 887 168 26 7 chr11 68872111 68872266 -81911287 - MLT1A2 LTR MaLR -28 346 189 2145 122 3 0 chr11 68872323 68872627 -81910926 - AluSx SINE Alu -7 305 1 224 146 0 55 chr11 68872633 68872688 -81910865 + (TTTTTA)n Simple_repeat Simple_repeat 2 53 0 853 111 7 15 chr11 68872692 68872827 -81910726 - AluJo SINE Alu -178 134 1 1892 141 10 3 chr11 68872827 68873125 -81910428 - AluJb SINE Alu -12 300 1 678 178 71 53 chr11 68873131 68873300 -81910253 - MLT1A2 LTR MaLR -218 172 1 1688 115 0 109 chr11 68873338 68873682 -81909871 + AluSx SINE Alu 2 302 0 649 281 8 51 chr11 68873860 68874095 -81909458 - L2 LINE L2 0 3313 3089 2318 93 0 0 chr11 68874249 68874550 -81909003 + AluSg SINE Alu 1 301 -9 2347 62 0 0 chr11 68874614 68874906 -81908647 + AluY SINE Alu 1 292 -19 358 287 37 9 chr11 68876757 68876865 -81906688 - MIR SINE MIR -67 195 85 922 141 0 0 chr11 68877100 68877228 -81906325 - FLAM_C SINE Alu -5 128 1 204 229 0 108 chr11 68877240 68877323 -81906230 + L2 LINE L2 3154 3227 -86 2201 98 0 10 chr11 68877472 68877769 -81905784 - AluSx SINE Alu -18 294 1 893 295 182 0 chr11 68877770 68878187 -81905366 + L2 LINE L2 2820 3312 -1 183 271 17 0 chr11 68878208 68878267 -81905286 - L2 LINE L2 -631 2683 2624 1028 156 9 49 chr11 68878274 68878499 -81905054 + AluJo SINE Alu 83 298 -14 2522 34 0 0 chr11 68878722 68879018 -81904535 + AluY SINE Alu 1 296 -15 2192 95 3 0 chr11 68881610 68881905 -81901648 - AluSx SINE Alu -16 296 1 1797 162 3 10 chr11 68882496 68882804 -81900749 + AluJb SINE Alu 1 306 -6 199 318 135 0 chr11 68883042 68883190 -81900363 + L2 LINE L2 2129 2296 -1018 2158 110 0 3 chr11 68883497 68883798 -81899755 - AluSq SINE Alu -12 301 2 1632 227 72 14 chr11 68883803 68883850 -81899703 + L1ME1 LINE L1 4851 4894 -1272 2314 94 0 3 chr11 68883850 68884158 -81899395 - AluSx SINE Alu -5 307 1 1632 227 72 14 chr11 68884158 68884897 -81898656 + L1ME1 LINE L1 4894 5677 -489 548 272 46 26 chr11 68884898 68885093 -81898460 + L1ME1 LINE L1 5948 6146 -20 321 327 25 31 chr11 68885168 68885327 -81898226 + L1ME LINE L1 5612 5769 -352 533 122 0 0 chr11 68885365 68885439 -81898114 - FLAM SINE Alu -14 129 56 1190 142 50 36 chr11 68885440 68885659 -81897894 + AluJo SINE Alu 86 307 -5 3679 169 49 23 chr11 68885659 68886386 -81897167 + L1MB7 LINE L1 5369 6119 -65 1742 167 3 3 chr11 68886386 68886680 -81896873 - AluJo SINE Alu -18 294 1 3679 169 49 23 chr11 68886680 68886732 -81896821 + L1MB7 LINE L1 6119 6168 -16 438 296 53 24 chr11 68886729 68886778 -81896775 + L1M4 LINE L1 3112 3158 -2988 * 2095 122 0 6 chr11 68886778 68887090 -81896463 + AluSg SINE Alu 1 310 0 438 296 53 24 chr11 68887090 68887378 -81896175 + L1M4 LINE L1 3158 3459 -2687 1488 130 0 5 chr11 68887395 68887611 -81895942 - AluSg/x SINE Alu -15 297 83 274 264 144 54 chr11 68888587 68888754 -81894799 - L2 LINE L2 0 3313 3132 308 269 143 8 chr11 68888778 68888897 -81894656 - L2 LINE L2 -1295 2019 1885 211 292 80 26 chr11 68889058 68889171 -81894382 + MIR SINE MIR 125 243 -19 21 0 0 0 chr11 68892278 68892299 -81891254 + GC_rich Low_complexity Low_complexity 1 21 0 1907 104 7 29 chr11 68893066 68893373 -81890180 + AluSq SINE Alu 1 300 -13 245 282 65 57 chr11 68893449 68893573 -81889980 - L2 LINE L2 -6 3307 3183 463 307 110 15 chr11 68893615 68893879 -81889674 + L2 LINE L2 2569 2857 -457 1729 134 38 10 chr11 68893970 68894261 -81889292 + AluJo SINE Alu 1 299 -13 2215 98 3 0 chr11 68894261 68894568 -81888985 + AluSc SINE Alu 1 308 -1 2449 50 0 0 chr11 68897625 68897924 -81885629 - AluY SINE Alu -9 302 4 2337 112 87 69 chr11 68898249 68898361 -81885192 - MER65A LTR ERV1 0 445 337 2176 117 3 0 chr11 68898361 68898670 -81884883 + AluSx SINE Alu 1 310 -2 2337 112 87 69 chr11 68898670 68898791 -81884762 - MER65A LTR ERV1 -108 337 220 198 0 0 0 chr11 68898791 68898813 -81884740 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 2337 112 87 69 chr11 68898813 68898825 -81884728 - MER65A LTR ERV1 -225 220 210 1993 104 4 0 chr11 68898825 68899095 -81884458 - AluSx SINE Alu -41 271 1 2337 112 87 69 chr11 68899095 68899284 -81884269 - MER65A LTR ERV1 -235 210 1 270 274 97 14 chr11 68899859 68900038 -81883515 + MIR SINE MIR 14 245 -17 245 258 16 0 chr11 68900163 68900225 -81883328 - L2 LINE L2 -20 3252 3190 2013 119 10 0 chr11 68901046 68901340 -81882213 - AluSx SINE Alu -15 297 1 751 197 15 7 chr11 68904006 68904143 -81879410 - FRAM SINE Alu -22 154 17 965 221 47 24 chr11 68905761 68905962 -81877591 - L1M4 LINE L1 -1528 4618 4423 2068 98 0 57 chr11 68905962 68906131 -81877422 - AluSx SINE Alu -15 297 120 279 0 0 0 chr11 68906131 68906162 -81877391 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2193 81 0 7 chr11 68906162 68906447 -81877106 - AluY SINE Alu -28 283 1 2068 98 0 57 chr11 68906447 68906591 -81876962 - AluSx SINE Alu -190 122 1 965 221 47 24 chr11 68906591 68906687 -81876866 - L1M4 LINE L1 -1723 4423 4314 822 167 26 51 chr11 68906690 68906846 -81876707 + AluJ SINE Alu 6 157 -155 493 340 86 5 chr11 68907017 68907226 -81876327 - L2 LINE L2 -584 2730 2505 * 886 241 131 42 chr11 68907222 68907328 -81876225 + L2 LINE L2 2596 2691 -622 2234 84 3 3 chr11 68907328 68907637 -81875916 - AluY SINE Alu -2 309 1 886 241 131 42 chr11 68907637 68908188 -81875365 + L2 LINE L2 2691 3313 0 1030 138 0 11 chr11 68908570 68908744 -81874809 + AluJ SINE Alu 141 312 0 21 0 0 0 chr11 68909978 68909999 -81873554 + GC_rich Low_complexity Low_complexity 1 21 0 212 280 254 30 chr11 68912422 68912686 -81870867 - L2 LINE L2 -11 3261 2939 513 298 115 4 chr11 68912693 68912928 -81870625 - MIR SINE MIR -1 261 1 357 133 33 0 chr11 68913728 68913788 -81869765 - MLT1H LTR MaLR -193 349 288 378 0 0 0 chr11 68913793 68913835 -81869718 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1259 108 0 21 chr11 68913917 68914103 -81869450 - U2 snRNA snRNA -1 187 6 743 259 112 39 chr11 68914107 68914366 -81869187 - MLT1H LTR MaLR -240 309 11 3038 157 34 4 chr11 68914627 68915099 -81868454 + MER66B LTR ERV1 1 486 0 2292 97 0 0 chr11 68915388 68915697 -81867856 - AluSg SINE Alu -1 309 1 2029 122 7 3 chr11 68916738 68917034 -81866519 - AluSc SINE Alu -12 297 1 518 260 39 0 chr11 68917425 68917552 -81866001 + L2 LINE L2 3141 3272 0 1818 160 0 13 chr11 68917809 68918116 -81865437 + AluJo SINE Alu 1 303 -9 824 59 0 0 chr11 68918118 68918219 -81865334 + AluSc SINE Alu 3 103 -206 1673 157 47 7 chr11 68918393 68918693 -81864860 - AluJo SINE Alu 0 312 1 2425 67 0 0 chr11 68918730 68919028 -81864525 - AluY SINE Alu -13 298 1 1662 163 31 0 chr11 68919817 68920105 -81863448 + AluSx SINE Alu 1 297 -15 2166 107 14 14 chr11 68920459 68920749 -81862804 + AluSx SINE Alu 1 290 -22 649 38 0 0 chr11 68920860 68920939 -81862614 - AluSg/x SINE Alu -26 284 206 2364 50 7 4 chr11 68920862 68921143 -81862410 - AluSg SINE Alu -28 282 1 2041 136 3 3 chr11 68921281 68921590 -81861963 - AluSx SINE Alu -3 309 1 1331 173 79 25 chr11 68921592 68921869 -81861684 - AluJo SINE Alu -8 294 3 252 274 16 97 chr11 68921897 68922021 -81861532 - MIR SINE MIR -92 170 57 741 144 0 16 chr11 68922047 68922172 -81861381 - FLAM_C SINE Alu -16 127 5 1286 160 0 15 chr11 68922195 68922401 -81861152 + AluSg/x SINE Alu 110 312 0 505 262 193 5 chr11 68922973 68923160 -81860393 + MIR SINE MIR 7 228 -34 22 0 0 0 chr11 68923373 68923395 -81860158 + AT_rich Low_complexity Low_complexity 1 22 0 746 162 0 22 chr11 68924446 68924582 -81858971 - FLAM_C SINE Alu 0 133 1 1956 103 92 0 chr11 68924631 68924893 -81858660 + AluSx SINE Alu 1 286 -26 1506 169 86 24 chr11 68924929 68925219 -81858334 - AluJo SINE Alu 0 312 5 281 172 104 104 chr11 68925220 68925306 -81858247 - Charlie1a DNA MER1_type -1339 1422 1334 2035 106 10 33 chr11 68925306 68925608 -81857945 + AluSq SINE Alu 1 295 -18 281 172 104 104 chr11 68925608 68925655 -81857898 - Charlie1a DNA MER1_type -1426 1335 1289 887 119 0 0 chr11 68925694 68925812 -81857741 + AluSg/x SINE Alu 136 253 -59 2046 139 13 0 chr11 68925852 68926154 -81857399 + AluSx SINE Alu 1 306 -6 1047 156 6 6 chr11 68926176 68926336 -81857217 + AluJo SINE Alu 1 160 -152 198 0 0 0 chr11 68927516 68927538 -81856015 + (T)n Simple_repeat Simple_repeat 1 22 0 2138 119 27 3 chr11 68928509 68928803 -81854750 + AluSx SINE Alu 1 301 -11 352 352 48 72 chr11 68928933 68929033 -81854520 + L2 LINE L2 2829 2930 -342 186 43 0 0 chr11 68929033 68929056 -81854497 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1882 154 0 0 chr11 68929056 68929336 -81854217 - AluJb SINE Alu -32 280 1 352 352 48 72 chr11 68929336 68929689 -81853864 + L2 LINE L2 2928 3272 0 1978 162 0 7 chr11 68929943 68930245 -81853308 + AluJo SINE Alu 7 306 -6 189 0 0 0 chr11 68930411 68930432 -81853121 + (A)n Simple_repeat Simple_repeat 1 21 0 834 166 22 0 chr11 68930943 68931082 -81852471 + AluJb SINE Alu 1 142 -170 1739 116 0 0 chr11 68931082 68931306 -81852247 + AluSq SINE Alu 1 224 -89 582 225 39 0 chr11 68931683 68931812 -81851741 + LTR5 LTR ERVK 1 134 -835 2682 47 0 0 chr11 68931883 68932182 -81851371 - AluY SINE Alu -12 299 1 3212 190 34 62 chr11 68932188 68933009 -81850544 + LTR5 LTR ERVK 172 969 0 2529 45 7 3 chr11 68933263 68933554 -81849999 - AluY SINE Alu -19 292 1 459 257 136 7 chr11 68933609 68933749 -81849804 + MER91A DNA MER1_type 8 165 -31 217 244 70 23 chr11 68933768 68933854 -81849699 + L2 LINE L2 2957 3046 -226 540 307 15 10 chr11 68934733 68934937 -81848616 - MIR SINE MIR -19 243 38 691 210 140 0 chr11 68934952 68935138 -81848415 + MIR SINE MIR 7 218 -44 257 248 177 35 chr11 68935188 68935301 -81848252 + L2 LINE L2 3129 3257 -15 2354 112 0 3 chr11 68935313 68935625 -81847928 - AluSx SINE Alu -1 311 1 181 294 0 44 chr11 68936034 68936102 -81847451 + MIR3 SINE MIR 111 175 -33 850 175 76 33 chr11 68936438 68936649 -81846904 + L1MD3 LINE L1 7727 7946 -49 2599 57 0 0 chr11 68936655 68936951 -81846602 - AluY SINE Alu -15 296 1 1229 98 0 18 chr11 68936957 68937121 -81846432 - AluJb SINE Alu -16 296 136 201 313 50 0 chr11 68937196 68937276 -81846277 - MIR SINE MIR -78 184 101 604 277 144 17 chr11 68938041 68938333 -81845220 - L2 LINE L2 -19 3294 2966 1363 270 163 21 chr11 68938629 68938715 -81844838 + L2 LINE L2 1625 1697 -1617 2315 110 0 0 chr11 68938715 68939024 -81844529 + AluSx SINE Alu 1 309 -3 1363 270 163 21 chr11 68939024 68939662 -81843891 + L2 LINE L2 1697 2452 -862 348 169 52 0 chr11 68939663 68939740 -81843813 + L2 LINE L2 2558 2638 -676 436 241 209 13 chr11 68939750 68939992 -81843561 + L2 LINE L2 2740 3046 -267 2161 125 7 3 chr11 68939992 68940289 -81843264 - AluSq SINE Alu -15 298 1 436 241 209 13 chr11 68940289 68940334 -81843219 + L2 LINE L2 3046 3081 -232 813 119 0 0 chr11 68940456 68940574 -81842979 - FLAM_C SINE Alu -15 118 1 307 247 165 0 chr11 68940661 68940758 -81842795 + L2 LINE L2 3200 3312 -1 2219 107 0 3 chr11 68940796 68941086 -81842467 + AluSx SINE Alu 1 289 -23 202 211 0 0 chr11 68941538 68941576 -81841977 - MIR3 SINE MIR -54 154 117 2533 81 0 0 chr11 68941578 68941887 -81841666 + AluSg SINE Alu 2 310 0 1367 69 42 21 chr11 68941894 68942083 -81841470 + AluSq SINE Alu 120 312 -1 205 88 29 0 chr11 68942102 68942136 -81841417 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1995 147 10 19 chr11 68943580 68943893 -81839660 + AluJo SINE Alu 1 310 -2 2117 104 0 14 chr11 68944123 68944420 -81839133 + AluSx SINE Alu 1 293 -19 1999 130 27 0 chr11 68944422 68944715 -81838838 + AluSx SINE Alu 1 301 -11 730 172 0 0 chr11 68944716 68944832 -81838721 - AluJo/FLAM SINE Alu -195 117 2 434 229 14 83 chr11 68945648 68945792 -81837761 - MIR SINE MIR -70 192 59 30 0 0 88 chr11 68947144 68947201 -81836352 + GC_rich Low_complexity Low_complexity 1 52 0 234 0 0 0 chr11 68947218 68947244 -81836309 + (A)n Simple_repeat Simple_repeat 1 26 0 304 268 183 42 chr11 68947267 68947409 -81836144 + MIR SINE MIR 3 164 -98 2657 74 8 0 chr11 68947475 68947826 -81835727 + THE1A LTR MaLR 1 354 -1 809 153 8 0 chr11 68947855 68947986 -81835567 + FLAM_C SINE Alu 2 133 0 2433 53 0 0 chr11 68948021 68948328 -81835225 - AluY SINE Alu 0 307 1 244 227 0 0 chr11 68948396 68948440 -81835113 + MIR SINE MIR 216 259 -3 2326 98 7 0 chr11 68949974 68950269 -81833284 + AluSx SINE Alu 1 297 -15 2103 129 0 22 chr11 68950273 68950590 -81832963 + AluSq SINE Alu 3 312 -1 749 178 89 24 chr11 68950803 68950972 -81832581 + MER5A DNA MER1_type 7 186 -3 180 279 16 33 chr11 68951035 68951096 -81832457 - L2 LINE L2 0 3272 3213 2431 92 0 0 chr11 68951115 68951419 -81832134 + AluY SINE Alu 1 304 -7 309 302 9 28 chr11 68951491 68951597 -81831956 - L2 LINE L2 -189 3083 2980 1616 180 28 3 chr11 68951640 68951924 -81831629 - AluJo SINE Alu -21 291 1 2099 117 6 43 chr11 68952098 68952423 -81831130 - AluSq SINE Alu 0 313 1 981 184 55 20 chr11 68952689 68952890 -81830663 + L1ME LINE L1 5376 5583 -583 2298 100 0 13 chr11 68952890 68953199 -81830354 - AluSg SINE Alu -5 305 1 2144 117 0 26 chr11 68953213 68953381 -81830172 - AluSq SINE Alu -14 299 141 2297 69 0 44 chr11 68953381 68953698 -81829855 - AluY SINE Alu -8 303 1 2144 117 0 26 chr11 68953698 68953836 -81829717 - AluSq SINE Alu -172 141 1 210 71 0 0 chr11 68953880 68953908 -81829645 + (TG)n Simple_repeat Simple_repeat 2 29 0 571 83 0 0 chr11 68953912 68953996 -81829557 - AluJb SINE Alu -37 275 192 2281 93 3 3 chr11 68954923 68955224 -81828329 - AluSx SINE Alu -11 301 1 972 113 15 0 chr11 68955224 68955357 -81828196 - AluSq/x SINE Alu -178 135 1 201 147 0 0 chr11 68955660 68955694 -81827859 + (T)n Simple_repeat Simple_repeat 1 34 0 2434 92 0 3 chr11 68955705 68956010 -81827543 + AluSc SINE Alu 1 304 -5 2115 119 0 0 chr11 68956014 68956292 -81827261 - AluSq SINE Alu -35 278 1 285 297 51 40 chr11 68956354 68956529 -81827024 + L2 LINE L2 2286 2462 -852 960 62 0 0 chr11 68956564 68956677 -81826876 + AluSg/x SINE Alu 182 294 -18 406 351 30 52 chr11 68956716 68956987 -81826566 + L2 LINE L2 2538 2802 -512 1265 281 114 52 chr11 68956989 68957522 -81826031 + L2 LINE L2 2145 2644 -669 2335 84 10 3 chr11 68957522 68957821 -81825732 - AluY SINE Alu -10 301 1 1829 154 33 0 chr11 68957822 68958095 -81825458 + AluJb SINE Alu 11 292 -20 1265 281 114 52 chr11 68958095 68958660 -81824893 + L2 LINE L2 2643 3307 -6 239 342 67 40 chr11 68958665 68958890 -81824663 + L2 LINE L2 2824 3054 -218 2278 119 6 0 chr11 68958937 68959248 -81824305 - AluSq SINE Alu 0 313 1 685 136 45 45 chr11 68959248 68959380 -81824173 - AluJo/FLAM SINE Alu -170 132 1 2253 110 13 10 chr11 68959416 68959725 -81823828 - AluSx SINE Alu -2 310 1 2243 128 0 3 chr11 68959808 68960121 -81823432 - AluSq SINE Alu -1 312 1 252 59 0 0 chr11 68960208 68960242 -81823311 + (T)n Simple_repeat Simple_repeat 1 34 0 2584 67 0 0 chr11 68960406 68960706 -81822847 - AluY SINE Alu -11 300 1 1810 156 31 0 chr11 68961495 68961783 -81821770 + AluSx SINE Alu 1 297 -15 2125 114 14 14 chr11 68962137 68962427 -81821126 + AluSx SINE Alu 1 290 -22 2191 116 0 3 chr11 68962540 68962825 -81820728 - AluSx SINE Alu -28 284 1 2177 137 0 0 chr11 68963229 68963536 -81820017 - AluSx SINE Alu -5 307 1 463 323 85 5 chr11 68963635 68963824 -81819729 - MIR SINE MIR -57 205 2 2004 156 10 0 chr11 68964298 68964599 -81818954 + AluJo SINE Alu 9 312 0 2699 39 0 3 chr11 68964600 68964909 -81818644 + AluY SINE Alu 1 308 -3 2296 119 3 0 chr11 68964911 68965221 -81818332 + AluSx SINE Alu 2 312 0 505 262 193 5 chr11 68965793 68965980 -81817573 + MIR SINE MIR 7 228 -34 22 0 0 0 chr11 68966193 68966215 -81817338 + AT_rich Low_complexity Low_complexity 1 22 0 746 162 0 22 chr11 68967267 68967403 -81816150 - FLAM_C SINE Alu 0 133 1 1956 103 92 0 chr11 68967452 68967714 -81815839 + AluSx SINE Alu 1 286 -26 1512 164 86 31 chr11 68967750 68968042 -81815511 - AluJo SINE Alu 0 312 5 281 172 104 104 chr11 68968043 68968129 -81815424 - Charlie1a DNA MER1_type -1339 1422 1334 2029 106 10 36 chr11 68968129 68968432 -81815121 + AluSq SINE Alu 1 295 -18 281 172 104 104 chr11 68968432 68968479 -81815074 - Charlie1a DNA MER1_type -1426 1335 1289 887 119 0 0 chr11 68968518 68968636 -81814917 + AluSg/x SINE Alu 136 253 -59 2046 139 13 0 chr11 68968676 68968978 -81814575 + AluSx SINE Alu 1 306 -6 1852 171 0 19 chr11 68969000 68969310 -81814243 + AluJo SINE Alu 1 304 -8 2568 69 0 0 chr11 68969313 68969617 -81813936 + AluSq SINE Alu 1 304 -9 4296 191 23 54 chr11 68969620 68969870 -81813683 - Charlie1a DNA MER1_type -1693 1068 812 2286 111 0 10 chr11 68969870 68970041 -81813512 - AluSq SINE Alu -9 304 136 2296 107 7 0 chr11 68970041 68970362 -81813191 - AluSp SINE Alu 0 313 1 2286 111 0 10 chr11 68970362 68970497 -81813056 - AluSq SINE Alu -177 136 1 4296 191 23 54 chr11 68970497 68971304 -81812249 - Charlie1a DNA MER1_type -1949 812 44 454 328 74 1 chr11 68972170 68972353 -81811200 + MIR3 SINE MIR 13 207 -1 2222 92 0 0 chr11 68972567 68972872 -81810681 - AluSc SINE Alu 0 305 1 444 235 198 6 chr11 68973082 68973244 -81810309 + MIR SINE MIR 64 256 -6 190 280 8 144 chr11 68973351 68973378 -81810175 - L2 LINE L2 -1 3271 3242 2353 87 0 0 chr11 68973378 68973678 -81809875 + AluSx SINE Alu 1 300 -12 190 280 8 144 chr11 68973678 68973692 -81809861 - L2 LINE L2 -30 3242 3228 876 255 48 12 chr11 68973692 68973895 -81809658 + MIR SINE MIR 2 196 -66 2149 94 0 23 chr11 68973895 68974194 -81809359 + AluSq SINE Alu 1 292 -21 1974 142 3 3 chr11 68974194 68974490 -81809063 + AluSx SINE Alu 1 296 -16 876 255 48 12 chr11 68974490 68974536 -81809017 + MIR SINE MIR 195 261 -1 190 280 8 144 chr11 68974536 68974594 -81808959 - L2 LINE L2 -44 3228 3190 1941 164 0 0 chr11 68974594 68974893 -81808660 - AluJo SINE Alu -7 305 7 190 280 8 144 chr11 68974893 68974923 -81808630 - L2 LINE L2 -82 3190 3158 363 377 38 47 chr11 68975147 68975500 -81808053 - L2 LINE L2 0 3272 2922 1909 154 7 0 chr11 68975500 68975805 -81807748 + AluJb SINE Alu 1 307 -5 363 377 38 47 chr11 68975805 68975899 -81807654 - L2 LINE L2 -350 2922 2829 2355 89 0 0 chr11 68976029 68976332 -81807221 - AluSx SINE Alu -9 303 1 558 255 123 30 chr11 68976735 68976970 -81806583 + MIR SINE MIR 5 261 -1 1878 142 0 23 chr11 68977037 68977339 -81806214 - AluJo SINE Alu -17 295 1 2220 117 10 0 chr11 68977426 68977735 -81805818 + AluSx SINE Alu 1 312 0 450 0 0 0 chr11 68977735 68977785 -81805768 + (TA)n Simple_repeat Simple_repeat 2 51 0 1030 146 6 0 chr11 68977805 68977963 -81805590 + AluSg/x SINE Alu 142 300 -10 1997 97 0 4 chr11 68978265 68978533 -81805020 + AluSx SINE Alu 35 301 -11 188 272 44 79 chr11 68979046 68979160 -81804393 + MIR3 SINE MIR 48 157 -51 2208 99 0 3 chr11 68980556 68980850 -81802703 + AluSx SINE Alu 2 294 -18 2362 42 0 3 chr11 68981006 68981316 -81802237 - AluY SINE Alu 0 309 1 1372 158 0 0 chr11 68981717 68981926 -81801627 - AluJb SINE Alu -14 298 90 294 158 146 73 chr11 68981927 68982009 -81801544 - L2 LINE L2 -4 3309 3222 1720 85 0 5 chr11 68983884 68984108 -81799445 + L1PB1 LINE L1 5928 6150 -1 312 285 20 93 chr11 68984488 68984639 -81798914 + L2 LINE L2 2916 3055 -217 2070 112 23 7 chr11 68984715 68985018 -81798535 - AluSx SINE Alu -4 308 1 2488 71 0 0 chr11 68985254 68985565 -81797988 + AluY SINE Alu 1 311 0 1519 104 9 18 chr11 68986993 68987215 -81796338 + AluSx SINE Alu 1 220 -92 454 108 0 0 chr11 68987215 68987274 -81796279 + AluSg/x SINE Alu 178 236 -76 180 0 0 0 chr11 68987278 68987298 -81796255 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1110 142 6 0 chr11 68987298 68987467 -81796086 + AluSg/x SINE Alu 133 302 -8 192 40 0 0 chr11 68987587 68987612 -81795941 + (TC)n Simple_repeat Simple_repeat 2 26 0 531 319 118 4 chr11 68988500 68988738 -81794815 + L3 LINE CR1 1220 1484 -93 509 331 46 0 chr11 68989026 68989201 -81794352 + MIR3 SINE MIR 17 199 -9 367 267 98 11 chr11 68989355 68989503 -81794050 + MIR3 SINE MIR 8 167 -41 1592 173 16 29 chr11 68989809 68990122 -81793431 + AluJb SINE Alu 1 309 -3 237 83 0 0 chr11 68990745 68990781 -81792772 + (CA)n Simple_repeat Simple_repeat 1 36 0 563 249 25 68 chr11 68993778 68994015 -81789538 + MIR SINE MIR 11 237 -25 439 302 15 28 chr11 68994229 68994417 -81789136 - MIR SINE MIR -56 206 16 239 307 0 27 chr11 68995076 68995151 -81788402 - L2 LINE L2 -6 3307 3235 1594 163 14 37 chr11 68995222 68995516 -81788037 + AluJo SINE Alu 7 293 -19 466 339 60 40 chr11 68996536 68996655 -81786898 - MIR SINE MIR 0 262 147 2165 124 0 0 chr11 68996655 68996953 -81786600 - AluSx SINE Alu -14 298 1 466 339 60 40 chr11 68996953 68997084 -81786469 - MIR SINE MIR -115 147 7 273 255 71 68 chr11 68997170 68997347 -81786206 + MIR SINE MIR 34 216 -46 718 127 18 0 chr11 68997401 68997511 -81786042 - AluY SINE Alu 0 311 200 1654 99 107 0 chr11 68997514 68997767 -81785786 - AluYb8 SINE Alu -38 280 1 1050 89 0 0 chr11 68997767 68997902 -81785651 - AluSq/x SINE Alu -177 135 1 1644 155 37 14 chr11 68998668 68998965 -81784588 - AluJb SINE Alu -8 304 1 399 338 187 0 chr11 68999015 68999320 -81784233 - L2 LINE L2 -1 3271 2910 342 297 30 0 chr11 69003070 69003171 -81780382 - MIR SINE MIR -72 136 33 852 189 31 6 chr11 69003274 69003433 -81780120 + FRAM SINE Alu 1 163 -13 2409 57 0 3 chr11 69003509 69003805 -81779748 - AluY SINE Alu -16 295 1 1989 134 3 10 chr11 69003889 69004194 -81779359 - AluJb SINE Alu -9 303 1 25 0 0 0 chr11 69004194 69004219 -81779334 + AT_rich Low_complexity Low_complexity 1 25 0 1514 131 33 20 chr11 69004219 69004464 -81779089 - AluJb SINE Alu -64 248 1 1880 148 7 3 chr11 69005146 69005437 -81778116 + AluJb SINE Alu 1 292 -20 213 39 0 0 chr11 69005438 69005464 -81778089 + (TA)n Simple_repeat Simple_repeat 1 26 0 2264 97 0 0 chr11 69005480 69005779 -81777774 + AluSg SINE Alu 1 299 -11 890 148 7 19 chr11 69006268 69006423 -81777130 - AluSg/x SINE Alu 0 309 157 407 318 0 40 chr11 69006518 69006669 -81776884 + MIR SINE MIR 117 261 -1 1369 126 118 48 chr11 69006681 69006951 -81776602 - AluJo SINE Alu -21 291 3 2266 96 0 10 chr11 69007047 69007350 -81776203 - AluY SINE Alu -11 300 1 852 184 95 0 chr11 69007606 69007774 -81775779 + AluSg/x SINE Alu 122 305 -7 1728 121 110 4 chr11 69007778 69008050 -81775503 + AluSx SINE Alu 1 301 -11 1339 183 28 10 chr11 69008121 69008410 -81775143 - MER58B DNA MER1_type 0 341 48 217 362 80 12 chr11 69008591 69008754 -81774799 + MIR SINE MIR 49 222 -40 821 159 40 0 chr11 69010587 69010713 -81772840 - FLAM_C SINE Alu -2 131 1 189 273 100 73 chr11 69010933 69011043 -81772510 + MIR3 SINE MIR 44 156 -52 199 291 164 57 chr11 69011372 69011671 -81771882 + L2 LINE L2 2937 3267 -5 235 288 32 88 chr11 69013479 69013515 -81770038 - MIR SINE MIR -58 150 114 2274 93 7 0 chr11 69013515 69013816 -81769737 + AluSq SINE Alu 1 303 -10 235 288 32 88 chr11 69013816 69013904 -81769649 - MIR SINE MIR -94 114 33 269 264 14 14 chr11 69014758 69014830 -81768723 + MIR3 SINE MIR 87 158 -50 241 229 10 125 chr11 69017717 69017813 -81765740 + MIR SINE MIR 60 144 -118 1073 95 7 0 chr11 69017813 69017825 -81765728 - AluSq/x SINE Alu -163 149 139 2319 106 3 0 chr11 69017825 69018136 -81765417 - AluSx SINE Alu 0 312 1 1073 95 7 0 chr11 69018136 69018271 -81765282 - AluSq/x SINE Alu -173 139 1 310 257 27 0 chr11 69018271 69018345 -81765208 + MIR SINE MIR 147 222 -40 423 331 89 53 chr11 69021165 69021257 -81762296 + L1ME4a LINE L1 5764 5851 -270 2253 94 0 0 chr11 69021257 69021535 -81762018 + AluSg SINE Alu 5 285 -25 441 36 0 0 chr11 69021535 69021590 -81761963 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2253 94 0 0 chr11 69021590 69021610 -81761943 + AluSg SINE Alu 284 303 -7 423 331 89 53 chr11 69021610 69021798 -81761755 + L1ME4a LINE L1 5851 6054 -67 2229 103 3 0 chr11 69021845 69022147 -81761406 - AluSg SINE Alu -7 303 1 2139 112 0 0 chr11 69022148 69022443 -81761110 - AluSx SINE Alu -12 300 6 180 325 12 24 chr11 69023515 69023598 -81759955 + MIR3 SINE MIR 83 164 -44 1731 172 0 25 chr11 69024925 69025239 -81758314 + AluJo SINE Alu 1 306 -6 193 240 67 13 chr11 69025577 69025652 -81757901 + MIR SINE MIR 56 134 -74 392 279 209 40 chr11 69025965 69026246 -81757307 - L2 LINE L2 -43 3270 2925 1866 165 0 20 chr11 69026246 69026549 -81757004 + AluSx SINE Alu 1 297 -15 392 279 209 40 chr11 69026549 69026593 -81756960 - L2 LINE L2 -388 2925 2890 256 342 70 0 chr11 69026993 69027151 -81756402 - L2 LINE L2 -254 3018 2850 2121 103 31 0 chr11 69027206 69027496 -81756057 + AluSx SINE Alu 1 299 -13 356 220 20 30 chr11 69029049 69029149 -81754404 + MIR3 SINE MIR 65 163 -45 1607 93 13 13 chr11 69029160 69029386 -81754167 + AluSg/x SINE Alu 69 294 -16 233 254 95 0 chr11 69030065 69030128 -81753425 - MIR SINE MIR -117 145 77 240 211 70 0 chr11 69033832 69033889 -81749664 - MIR SINE MIR -123 139 79 1841 157 7 0 chr11 69034091 69034385 -81749168 - AluJb SINE Alu -16 296 1 257 377 25 37 chr11 69035359 69035680 -81747873 + L2 LINE L2 2848 3164 -108 1909 111 0 102 chr11 69036062 69036405 -81747148 - AluSg1 SINE Alu -1 308 1 1962 137 10 16 chr11 69036440 69036747 -81746806 - AluJb SINE Alu -3 309 5 185 323 110 24 chr11 69037265 69037392 -81746161 + L2 LINE L2 3169 3306 -7 2155 104 16 7 chr11 69039099 69039407 -81744146 - AluSx SINE Alu -1 311 1 442 299 14 35 chr11 69039417 69039561 -81743992 - L1MC4 LINE L1 0 8042 7902 1092 119 0 0 chr11 69039570 69039747 -81743806 + (TA)n Simple_repeat Simple_repeat 2 178 0 2247 61 32 0 chr11 69039747 69040026 -81743527 - AluSp SINE Alu -25 288 1 1123 234 111 39 chr11 69040031 69040463 -81743090 - L1MC4 LINE L1 -92 7950 7488 309 288 167 2 chr11 69040590 69040746 -81742807 - MIR SINE MIR -44 218 2 846 203 151 10 chr11 69040793 69040985 -81742568 - MER20 DNA MER1_type 0 219 1 213 39 0 0 chr11 69040991 69041017 -81742536 + (TG)n Simple_repeat Simple_repeat 2 27 0 1393 190 24 22 chr11 69041175 69041505 -81742048 - MLT1E3 LTR MaLR 0 614 297 1652 152 4 4 chr11 69041505 69041761 -81741792 - AluJb SINE Alu -47 265 10 270 229 16 0 chr11 69041891 69041952 -81741601 - MLT1E1 LTR MaLR -587 67 6 187 293 57 57 chr11 69043272 69043318 -81740235 + MIR3 SINE MIR 8 53 -155 2174 84 0 17 chr11 69043318 69043614 -81739939 + AluSc SINE Alu 1 291 -18 187 293 57 57 chr11 69043614 69043707 -81739846 + MIR3 SINE MIR 52 147 -61 1993 107 23 33 chr11 69044110 69044410 -81739143 + AluSq SINE Alu 1 297 -16 2050 125 27 0 chr11 69044931 69045226 -81738327 - AluSx SINE Alu -9 303 1 189 0 0 0 chr11 69046196 69046217 -81737336 + (A)n Simple_repeat Simple_repeat 1 21 0 241 195 24 49 chr11 69047849 69047931 -81735622 + (CCCCG)n Simple_repeat Simple_repeat 1 80 0 374 304 77 11 chr11 69049679 69049860 -81733693 - MIR3 SINE MIR 0 208 16 2200 106 0 7 chr11 69050836 69051138 -81732415 - AluSx SINE Alu -12 300 1 2350 88 7 0 chr11 69052078 69052384 -81731169 - AluSg SINE Alu -2 308 1 2360 57 7 3 chr11 69052431 69052727 -81730826 + AluY SINE Alu 1 297 -14 1937 108 0 0 chr11 69053932 69054192 -81729361 - AluSx SINE Alu -16 296 37 631 200 9 0 chr11 69054194 69054304 -81729249 - AluJo SINE Alu -84 228 118 436 342 43 27 chr11 69055884 69056071 -81727482 - MIR SINE MIR -29 233 44 260 286 143 34 chr11 69056711 69056886 -81726667 + MIR SINE MIR 51 244 -18 364 263 65 89 chr11 69057402 69057591 -81725962 - MIR SINE MIR -62 146 6 767 278 105 3 chr11 69057685 69057991 -81725562 - L1ME1 LINE L1 -100 6066 5730 2144 91 3 14 chr11 69058684 69058970 -81724583 - AluSq SINE Alu -30 283 1 2202 120 0 0 chr11 69058970 69059270 -81724283 - AluSx SINE Alu -12 300 1 837 201 31 42 chr11 69059313 69059572 -81723981 - L1MB3 LINE L1 -42 6141 5886 4525 114 16 39 chr11 69059587 69059702 -81723851 - L1PA15 LINE L1 -21 6144 6028 1705 148 62 7 chr11 69059702 69059993 -81723560 - AluJo SINE Alu -5 307 1 4525 114 16 39 chr11 69059993 69060695 -81722858 - L1PA15 LINE L1 -137 6028 5346 202 318 73 20 chr11 69062549 69062681 -81720872 - MIR SINE MIR -66 142 18 1228 119 119 0 chr11 69063515 69063708 -81719845 - AluJb SINE Alu -11 301 86 1741 138 24 20 chr11 69064203 69064501 -81719052 + AluJo SINE Alu 3 301 -11 215 330 102 0 chr11 69064512 69064600 -81718953 - MIR3 SINE MIR -15 193 97 1166 208 37 0 chr11 69064626 69064842 -81718711 - MER58A DNA MER1_type 0 224 1 1175 117 0 0 chr11 69065209 69065372 -81718181 - AluSg/x SINE Alu -15 297 135 2226 107 0 3 chr11 69065372 69065671 -81717882 - AluSg SINE Alu -12 298 1 1772 132 66 0 chr11 69065671 69065958 -81717595 - AluSq SINE Alu -7 306 1 2090 113 0 0 chr11 69066867 69067149 -81716404 - AluSx SINE Alu -6 306 25 251 293 106 16 chr11 69067159 69067282 -81716271 - L2 LINE L2 -20 3252 3119 391 277 7 71 chr11 69068021 69068162 -81715391 + L2 LINE L2 2921 3052 -261 898 145 0 0 chr11 69068166 69068304 -81715249 - AluJb SINE Alu -7 305 168 2147 86 4 0 chr11 69068318 69068596 -81714957 - AluSg SINE Alu -31 279 1 268 303 16 41 chr11 69068764 69068886 -81714667 + MIR SINE MIR 16 134 -128 292 253 95 0 chr11 69068915 69069010 -81714543 + MIR SINE MIR 121 224 -38 339 257 7 92 chr11 69069197 69069236 -81714317 + MIR3 SINE MIR 63 104 -104 2059 221 5 19 chr11 69069236 69069598 -81713955 + MLT2D LTR ERVL 5 371 -43 2229 95 0 46 chr11 69069598 69069745 -81713808 + AluSq SINE Alu 1 153 -160 2133 69 30 53 chr11 69069745 69070048 -81713505 + AluY SINE Alu 1 296 -15 2229 95 0 46 chr11 69070048 69070225 -81713328 + AluSq SINE Alu 153 310 -3 2059 221 5 19 chr11 69070225 69070237 -81713316 + MLT2D LTR ERVL 371 382 -32 279 0 0 0 chr11 69070237 69070268 -81713285 + (CA)n Simple_repeat Simple_repeat 1 31 0 2059 221 5 19 chr11 69070268 69070308 -81713245 + MLT2D LTR ERVL 382 414 0 339 257 7 92 chr11 69070308 69070420 -81713133 + MIR3 SINE MIR 104 201 -7 376 331 22 7 chr11 69071362 69071501 -81712052 + MIR SINE MIR 81 221 -41 2377 58 0 0 chr11 69073326 69073618 -81709935 - AluY SINE Alu -19 292 1 1871 157 13 0 chr11 69073619 69073919 -81709634 - AluJo SINE Alu 0 312 9 484 328 79 0 chr11 69074398 69074587 -81708966 + MIR SINE MIR 2 205 -57 2069 140 0 0 chr11 69074686 69074993 -81708560 + AluSx SINE Alu 1 307 -5 2148 104 10 7 chr11 69075397 69075695 -81707858 + AluSq SINE Alu 1 299 -14 1937 108 0 0 chr11 69076901 69077161 -81706392 - AluSx SINE Alu -16 296 37 631 200 9 0 chr11 69077163 69077273 -81706280 - AluJo SINE Alu -84 228 118 436 342 43 27 chr11 69078853 69079040 -81704513 - MIR SINE MIR -29 233 44 260 286 143 34 chr11 69079680 69079855 -81703698 + MIR SINE MIR 51 244 -18 364 263 65 89 chr11 69080371 69080560 -81702993 - MIR SINE MIR -62 146 6 767 278 105 3 chr11 69080654 69080960 -81702593 - L1ME1 LINE L1 -100 6066 5730 2043 105 3 14 chr11 69081653 69081939 -81701614 - AluSq SINE Alu -30 283 1 2178 120 0 0 chr11 69081940 69082239 -81701314 - AluSx SINE Alu -13 299 1 832 205 34 41 chr11 69082282 69082550 -81701003 - L1MB3 LINE L1 -42 6141 5876 4480 114 16 40 chr11 69082558 69082674 -81700879 - L1PA15 LINE L1 -21 6144 6027 1762 138 62 7 chr11 69082674 69082965 -81700588 - AluJo SINE Alu -5 307 1 4480 114 16 40 chr11 69082965 69083667 -81699886 - L1PA15 LINE L1 -138 6027 5346 202 318 73 20 chr11 69085521 69085653 -81697900 - MIR SINE MIR -66 142 18 1228 119 119 0 chr11 69086486 69086679 -81696874 - AluJb SINE Alu -11 301 86 1741 138 24 20 chr11 69087174 69087472 -81696081 + AluJo SINE Alu 3 301 -11 215 330 102 0 chr11 69087483 69087571 -81695982 - MIR3 SINE MIR -15 193 97 1166 208 37 0 chr11 69087597 69087813 -81695740 - MER58A DNA MER1_type 0 224 1 1071 146 0 6 chr11 69088177 69088342 -81695211 - AluSg/x SINE Alu -14 296 133 2014 124 7 10 chr11 69088342 69088641 -81694912 - AluSg SINE Alu -12 298 1 1782 129 63 0 chr11 69088642 69088928 -81694625 - AluSq SINE Alu -9 304 1 2090 113 0 0 chr11 69089837 69090119 -81693434 - AluSx SINE Alu -6 306 25 251 293 106 16 chr11 69090129 69090252 -81693301 - L2 LINE L2 -20 3252 3119 2027 97 7 32 chr11 69090893 69091201 -81692352 + AluSx SINE Alu 1 300 -12 831 97 0 76 chr11 69091209 69091353 -81692200 + FLAM_C SINE Alu 1 133 0 2335 87 7 0 chr11 69091932 69092242 -81691311 - AluSq SINE Alu -1 312 1 203 206 82 82 chr11 69093178 69093251 -81690302 + MIR3 SINE MIR 1 73 -135 2521 64 0 0 chr11 69098437 69098748 -81684805 - AluY SINE Alu 0 311 1 2070 112 23 7 chr11 69098984 69099287 -81684266 + AluSx SINE Alu 1 308 -4 312 285 20 93 chr11 69099363 69099514 -81684039 - L2 LINE L2 -217 3055 2916 1738 80 0 5 chr11 69099894 69100118 -81683435 - L1PB1 LINE L1 -1 6150 5928 294 158 146 73 chr11 69101993 69102075 -81681478 + L2 LINE L2 3222 3309 -4 1372 158 0 0 chr11 69102076 69102285 -81681268 + AluJb SINE Alu 90 298 -14 2484 61 0 3 chr11 69102686 69102998 -81680555 + AluY SINE Alu 1 311 0 713 259 197 60 chr11 69103139 69103475 -81680078 - LTR33 LTR ERVL -20 501 212 616 177 81 8 chr11 69103475 69103599 -81679954 + FLAM_C SINE Alu 1 133 0 2318 78 0 3 chr11 69103606 69103900 -81679653 + AluSq SINE Alu 6 298 -15 713 259 197 60 chr11 69103900 69103992 -81679561 - LTR33 LTR ERVL -314 207 5 348 240 256 0 chr11 69104289 69104410 -81679143 + MIR SINE MIR 15 166 -96 2093 93 40 0 chr11 69104415 69104693 -81678860 + AluSg SINE Alu 6 294 -16 949 181 0 0 chr11 69104713 69104879 -81678674 + FRAM SINE Alu 1 40 0 2357 74 0 0 chr11 69105171 69105469 -81678084 - AluY SINE Alu -13 298 1 1988 125 7 0 chr11 69105516 69105816 -81677737 + AluSx SINE Alu 1 302 0 1965 114 3 30 chr11 69105826 69106124 -81677429 + AluSx SINE Alu 1 290 -22 1271 122 0 6 chr11 69106125 69106305 -81677248 - AluSq SINE Alu -134 179 1 2141 108 0 13 chr11 69106314 69106619 -81676934 - AluSx SINE Alu -11 301 1 311 253 61 30 chr11 69106683 69106782 -81676771 - L2 LINE L2 -2 3311 3210 1145 169 18 59 chr11 69106791 69106924 -81676629 + L1MD3 LINE L1 7538 7656 -339 1691 164 17 0 chr11 69106924 69107216 -81676337 + AluJo SINE Alu 14 310 -2 1145 169 18 59 chr11 69107216 69107355 -81676198 + L1MD3 LINE L1 7656 7799 -196 1916 114 7 4 chr11 69107432 69107740 -81675813 - AluSx SINE Alu 0 320 12 384 250 12 89 chr11 69108035 69108203 -81675350 + MIR SINE MIR 108 262 0 326 269 7 103 chr11 69109043 69109188 -81674365 + MIR SINE MIR 35 165 -97 196 286 0 0 chr11 69110217 69110259 -81673294 - MIR SINE MIR -110 152 111 2089 102 3 16 chr11 69110441 69110745 -81672808 + AluSx SINE Alu 1 300 -12 952 243 84 9 chr11 69111119 69111440 -81672113 + L1ME3 LINE L1 5532 5876 -245 2149 105 10 0 chr11 69111453 69111749 -81671804 + AluSx SINE Alu 1 299 -13 2093 108 3 0 chr11 69111751 69112046 -81671507 + AluSx SINE Alu 1 296 -16 2387 69 0 7 chr11 69112046 69112352 -81671201 + AluY SINE Alu 1 304 -7 568 292 15 49 chr11 69112466 69112730 -81670823 - L1MC/D LINE L1 -1988 5820 5566 300 308 59 77 chr11 69113260 69113481 -81670072 + L1ME3 LINE L1 5944 6160 -2 2108 141 0 0 chr11 69113490 69113796 -81669757 + AluJo SINE Alu 5 310 -2 1887 227 28 21 chr11 69113985 69114548 -81669005 - L1ME1 LINE L1 -4 6162 5596 2138 87 35 3 chr11 69114548 69114837 -81668716 - AluSx SINE Alu -14 298 1 1950 155 0 3 chr11 69114840 69115149 -81668404 - AluSx SINE Alu -4 308 1 1433 201 14 7 chr11 69115149 69115433 -81668120 - AluJb SINE Alu -16 296 11 2310 74 0 14 chr11 69115441 69115738 -81667815 - AluY SINE Alu -10 301 9 2231 72 0 33 chr11 69115757 69116063 -81667490 - AluY SINE Alu -15 296 1 333 291 60 8 chr11 69116112 69116246 -81667307 + MER117 DNA MER1_type 1 141 -56 312 274 46 50 chr11 69117179 69117378 -81666175 + MIR SINE MIR 9 215 -47 514 266 63 0 chr11 69122380 69122555 -81660998 + MIR SINE MIR 26 214 -48 276 219 0 31 chr11 69123587 69123651 -81659902 + (CATG)n Simple_repeat Simple_repeat 1 62 0 500 333 56 5 chr11 69124208 69124406 -81659147 + MIR SINE MIR 21 228 -34 589 275 127 13 chr11 69126488 69126717 -81656836 + MIR SINE MIR 8 262 0 475 240 39 7 chr11 69128574 69128728 -81654825 + MER103 DNA DNA 8 166 0 264 152 22 0 chr11 69128789 69128835 -81654718 - L2 LINE L2 -4 3309 3263 325 266 65 58 chr11 69128863 69129017 -81654536 - MIR SINE MIR -36 226 72 198 0 0 0 chr11 69130401 69130423 -81653130 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 200 245 0 19 chr11 69130742 69130795 -81652758 + A-rich Low_complexity Low_complexity 2 53 0 232 313 88 14 chr11 69135182 69135329 -81648224 - MIR SINE MIR -72 190 33 * 376 297 25 52 chr11 69135288 69135473 -81648080 + MIR SINE MIR 15 194 -68 2249 112 0 0 chr11 69135473 69135785 -81647768 + AluSx SINE Alu 1 312 0 376 297 25 52 chr11 69135785 69135821 -81647732 + MIR SINE MIR 194 229 -33 1698 171 37 0 chr11 69135990 69136289 -81647264 - AluJo SINE Alu -2 310 1 378 264 129 16 chr11 69137102 69137229 -81646324 - MIR SINE MIR -61 147 37 687 305 21 0 chr11 69137263 69137453 -81646100 + MIR SINE MIR 50 243 -19 2289 104 3 0 chr11 69137554 69137861 -81645692 + AluSp SINE Alu 2 309 -4 188 279 66 0 chr11 69137936 69137997 -81645556 - MIR SINE MIR -63 145 81 621 259 146 46 chr11 69138651 69138967 -81644586 + L2 LINE L2 2189 2549 -765 2297 87 7 0 chr11 69138967 69139276 -81644277 - AluSx SINE Alu -1 311 1 621 259 146 46 chr11 69139276 69139329 -81644224 + L2 LINE L2 2549 2595 -719 880 191 0 36 chr11 69139503 69139671 -81643882 - AluJb SINE Alu -10 302 141 1814 156 0 3 chr11 69139700 69140001 -81643552 - AluSg SINE Alu -10 300 1 1876 122 10 3 chr11 69140030 69140318 -81643235 - AluSg SINE Alu -20 290 1 424 85 0 0 chr11 69140318 69140377 -81643176 - AluSq/x SINE Alu -177 136 78 1329 156 5 5 chr11 69140377 69140589 -81642964 - AluSx SINE Alu -100 212 1 180 0 0 0 chr11 69140775 69140795 -81642758 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 358 275 96 72 chr11 69141584 69141751 -81641802 - MIR SINE MIR -34 228 58 248 294 59 29 chr11 69143284 69143386 -81640167 - MIR SINE MIR -58 150 60 2514 61 0 0 chr11 69143854 69144164 -81639389 - AluY SINE Alu -1 310 1 1932 133 7 0 chr11 69144211 69144511 -81639042 + AluSx SINE Alu 1 302 0 2082 101 14 3 chr11 69144522 69144819 -81638734 + AluSg SINE Alu 1 300 -10 1873 110 4 4 chr11 69144919 69145191 -81638362 + AluSx SINE Alu 40 311 -1 347 244 71 10 chr11 69145442 69145639 -81637914 + L1 LINE L1 5191 5399 -747 1177 221 79 38 chr11 69145734 69145982 -81637571 + LTR24B LTR ERV1 81 318 -258 2041 141 3 0 chr11 69145982 69146288 -81637265 - AluSx SINE Alu -5 307 1 1177 221 79 38 chr11 69146288 69146510 -81637043 + LTR24B LTR ERV1 318 570 -6 364 62 0 0 chr11 69146509 69146557 -81636996 + MSTD LTR MaLR 7 54 -342 * 628 47 153 0 chr11 69146558 69146643 -81636910 + AluS SINE Alu 3 100 -213 1425 99 5 0 chr11 69146643 69146834 -81636719 - AluSq SINE Alu -116 197 6 616 177 81 8 chr11 69146841 69146965 -81636588 - FLAM_C SINE Alu 0 133 1 584 269 250 16 chr11 69146985 69147301 -81636252 + LTR33 LTR ERVL 112 501 -20 2604 45 0 0 chr11 69147441 69147750 -81635803 - AluY SINE Alu -1 310 2 370 249 5 69 chr11 69148178 69148367 -81635186 + CT-rich Low_complexity Low_complexity 2 178 0 1088 145 0 17 chr11 69149109 69149281 -81634272 - AluSg/x SINE Alu -10 302 134 2170 113 17 0 chr11 69149281 69149583 -81633970 - AluSx SINE Alu -5 307 1 306 336 83 22 chr11 69149758 69150035 -81633518 - L2 LINE L2 -159 3113 2820 1999 144 3 7 chr11 69150149 69150454 -81633099 + AluSx SINE Alu 1 304 -8 470 287 153 25 chr11 69150476 69150678 -81632875 - MIR SINE MIR -22 240 13 301 262 47 36 chr11 69151182 69151309 -81632244 - MIR SINE MIR -78 130 49 205 100 0 50 chr11 69152128 69152168 -81631385 + (TCCCC)n Simple_repeat Simple_repeat 4 41 0 250 261 29 14 chr11 69153173 69153242 -81630311 + MIR SINE MIR 58 127 -81 290 311 176 0 chr11 69153357 69153476 -81630077 - MIR SINE MIR -96 166 27 312 274 46 50 chr11 69158158 69158357 -81625196 - MIR SINE MIR -47 215 9 333 291 60 8 chr11 69159273 69159407 -81624146 - MER117 DNA MER1_type -56 141 1 2204 74 0 33 chr11 69159456 69159755 -81623798 + AluY SINE Alu 1 289 -22 1271 122 0 6 chr11 69159756 69159936 -81623617 - AluSq SINE Alu -134 179 1 2141 108 0 13 chr11 69159945 69160250 -81623303 - AluSx SINE Alu -11 301 1 311 253 61 30 chr11 69160314 69160413 -81623140 - L2 LINE L2 -2 3311 3210 1145 169 18 59 chr11 69160422 69160555 -81622998 + L1MD3 LINE L1 7538 7656 -339 1699 164 17 0 chr11 69160555 69160848 -81622705 + AluJo SINE Alu 14 311 -1 1145 169 18 59 chr11 69160848 69160987 -81622566 + L1MD3 LINE L1 7656 7799 -196 1916 114 7 4 chr11 69161064 69161372 -81622181 - AluSx SINE Alu 0 320 12 674 213 0 0 chr11 69161394 69161516 -81622037 + FLAM_C SINE Alu 1 122 -21 2300 102 0 0 chr11 69161628 69161932 -81621621 + AluSx SINE Alu 1 304 -8 337 299 71 25 chr11 69162158 69162355 -81621198 - L1MC/D LINE L1 -1992 5816 5611 680 156 156 0 chr11 69162356 69162484 -81621069 - AluJb SINE Alu -11 301 154 280 81 0 129 chr11 69162708 69162742 -81620811 - MSTB2 LTR MaLR -16 441 417 1579 153 52 35 chr11 69162742 69163030 -81620523 - AluJo SINE Alu -19 293 1 280 81 0 129 chr11 69163030 69163057 -81620496 - MSTB2 LTR MaLR -40 417 388 2174 77 3 17 chr11 69163059 69163346 -81620207 + AluSq SINE Alu 1 283 -30 767 278 105 3 chr11 69164039 69164345 -81619208 + L1ME1 LINE L1 5730 6066 -100 364 263 65 89 chr11 69164439 69164628 -81618925 + MIR SINE MIR 6 192 -62 260 286 143 34 chr11 69165144 69165319 -81618234 - MIR SINE MIR -18 244 51 436 342 43 27 chr11 69165959 69166146 -81617407 + MIR SINE MIR 44 233 -29 631 200 9 0 chr11 69167726 69167836 -81615717 + AluJo SINE Alu 118 228 -84 1937 108 0 0 chr11 69167838 69168098 -81615455 + AluSx SINE Alu 37 296 -16 2346 61 7 3 chr11 69169304 69169600 -81613953 - AluY SINE Alu -14 297 1 2313 84 0 3 chr11 69169647 69169943 -81613610 + AluSg SINE Alu 1 295 -15 256 342 70 0 chr11 69170387 69170545 -81613008 - L2 LINE L2 -254 3018 2850 2121 103 31 0 chr11 69170600 69170890 -81612663 + AluSx SINE Alu 1 299 -13 363 210 20 30 chr11 69172443 69172543 -81611010 + MIR3 SINE MIR 65 163 -45 1607 93 13 13 chr11 69172554 69172780 -81610773 + AluSg/x SINE Alu 71 296 -16 233 254 95 0 chr11 69173459 69173522 -81610031 - MIR SINE MIR -117 145 77 240 211 70 0 chr11 69177222 69177279 -81606274 - MIR SINE MIR -123 139 79 1841 157 7 0 chr11 69177481 69177775 -81605778 - AluJb SINE Alu -16 296 1 257 377 25 37 chr11 69178749 69179070 -81604483 + L2 LINE L2 2848 3164 -108 1909 111 0 102 chr11 69179452 69179795 -81603758 - AluSg1 SINE Alu -1 308 1 1946 138 10 16 chr11 69179830 69180135 -81603418 - AluJb SINE Alu -5 307 5 185 323 110 24 chr11 69180653 69180780 -81602773 + L2 LINE L2 3169 3306 -7 457 296 50 25 chr11 69183138 69183337 -81600216 - MIR SINE MIR -20 242 39 210 118 0 0 chr11 69183468 69183502 -81600051 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 1714 154 7 23 chr11 69183822 69183959 -81599594 + AluSx SINE Alu 1 139 -173 2187 93 3 10 chr11 69183959 69184260 -81599293 + AluSg SINE Alu 1 299 -11 1714 154 7 23 chr11 69184260 69184421 -81599132 + AluSx SINE Alu 139 294 -18 2350 46 0 3 chr11 69184577 69184887 -81598666 - AluY SINE Alu 0 309 1 1372 158 0 0 chr11 69185288 69185497 -81598056 - AluJb SINE Alu -14 298 90 294 158 146 73 chr11 69185498 69185580 -81597973 - L2 LINE L2 -4 3309 3222 1692 84 0 9 chr11 69187507 69187732 -81595821 + L1PB1 LINE L1 5928 6150 -1 312 285 20 93 chr11 69188112 69188263 -81595290 + L2 LINE L2 2916 3055 -217 2070 112 23 7 chr11 69188339 69188642 -81594911 - AluSx SINE Alu -4 308 1 2413 68 13 0 chr11 69188878 69189185 -81594368 + AluY SINE Alu 1 311 0 358 256 56 32 chr11 69191140 69191265 -81592288 + MIR3 SINE MIR 14 141 -67 378 91 0 0 chr11 69191848 69191903 -81591650 + (TG)n Simple_repeat Simple_repeat 2 56 0 185 228 53 35 chr11 69194302 69194359 -81589194 + MIR3 SINE MIR 140 197 -11 264 250 75 0 chr11 69197054 69197134 -81586419 - MER91C DNA MER1_type -35 105 20 186 321 55 37 chr11 69199064 69199173 -81584380 - MIR SINE MIR -69 139 29 468 279 20 41 chr11 69199418 69199565 -81583988 + MIR3 SINE MIR 7 150 -58 200 313 15 30 chr11 69199914 69200045 -81583508 + GA-rich Low_complexity Low_complexity 6 134 0 294 313 82 67 chr11 69202146 69202341 -81581212 - MIR SINE MIR -45 217 20 2247 82 0 0 chr11 69203383 69203677 -81579876 + AluSg1 SINE Alu 1 294 -15 320 262 126 0 chr11 69203900 69204003 -81579550 + L2 LINE L2 3197 3312 -1 299 297 89 99 chr11 69204210 69204412 -81579141 + MIR SINE MIR 20 219 -43 259 267 23 35 chr11 69204525 69204611 -81578942 + L2 LINE L2 3187 3271 -1 581 298 51 17 chr11 69206234 69206469 -81577084 - MIR SINE MIR -7 255 13 2131 126 0 19 chr11 69206609 69206927 -81576626 + AluSx SINE Alu 1 312 0 242 114 0 23 chr11 69206930 69206974 -81576579 + (GGA)n Simple_repeat Simple_repeat 2 44 0 2434 71 0 3 chr11 69207139 69207449 -81576104 + AluY SINE Alu 1 309 -2 245 114 45 0 chr11 69207461 69207505 -81576048 + MER31A LTR ERV1 353 398 -87 2148 95 10 26 chr11 69207727 69208031 -81575522 + AluSq SINE Alu 1 299 -14 2274 156 11 47 chr11 69208422 69208834 -81574719 + L1MB3 LINE L1 5735 6131 -52 2101 116 3 7 chr11 69208834 69209135 -81574418 + AluSq SINE Alu 1 300 -13 2274 156 11 47 chr11 69209135 69209171 -81574382 + L1MB3 LINE L1 6131 6167 -16 2360 69 0 0 chr11 69209349 69209640 -81573913 + AluSg SINE Alu 1 291 -19 2460 69 0 0 chr11 69209640 69209944 -81573609 + AluSc SINE Alu 1 304 -5 330 343 39 58 chr11 69210637 69210844 -81572709 + L2 LINE L2 3110 3312 -1 2254 88 14 0 chr11 69210844 69211141 -81572412 - AluSx SINE Alu -11 301 1 2288 88 0 0 chr11 69211208 69211502 -81572051 - AluY SINE Alu -17 294 1 258 311 246 11 chr11 69211525 69211708 -81571845 - MIR SINE MIR -17 245 20 466 307 69 0 chr11 69212658 69212847 -81570706 - MIR SINE MIR -56 206 5 225 314 64 50 chr11 69215206 69215346 -81568207 + L2 LINE L2 3111 3252 -20 307 211 56 14 chr11 69217725 69217796 -81565757 + MIR SINE MIR 77 150 -112 189 0 0 0 chr11 69218362 69218383 -81565170 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1933 129 7 3 chr11 69218402 69218697 -81564856 + AluSx SINE Alu 5 300 -12 520 209 22 0 chr11 69218709 69218800 -81564753 - FLAM_A SINE Alu -32 110 18 2149 116 0 3 chr11 69218819 69219120 -81564433 - AluSq SINE Alu 0 313 14 245 269 0 130 chr11 69219472 69219580 -81563973 - MIR SINE MIR -50 212 119 204 267 13 0 chr11 69220547 69220622 -81562931 + (CA)n Simple_repeat Simple_repeat 2 77 0 228 190 17 17 chr11 69221721 69221779 -81561774 + A-rich Low_complexity Low_complexity 2 59 0 233 258 0 15 chr11 69221939 69222005 -81561548 + C-rich Low_complexity Low_complexity 1 65 0 216 0 0 0 chr11 69222735 69222759 -81560794 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 2449 61 0 0 chr11 69223997 69224292 -81559261 + AluY SINE Alu 1 295 -16 568 281 34 0 chr11 69225169 69225315 -81558238 + MIR SINE MIR 56 206 -56 2272 103 0 6 chr11 69225459 69225770 -81557783 + AluSx SINE Alu 4 312 0 243 228 63 38 chr11 69226091 69226170 -81557383 - L2 LINE L2 -188 3084 3004 512 264 162 0 chr11 69226192 69226359 -81557194 - MIR SINE MIR -33 229 36 2247 119 0 0 chr11 69227984 69228296 -81555257 + AluSx SINE Alu 1 312 0 200 279 88 0 chr11 69228686 69228754 -81554799 + L2 LINE L2 3138 3211 -61 216 171 0 0 chr11 69231418 69231453 -81552100 + (TG)n Simple_repeat Simple_repeat 2 36 0 343 294 52 24 chr11 69233600 69233757 -81549796 + MIR SINE MIR 20 181 -62 874 111 32 0 chr11 69233890 69234016 -81549537 - FLAM_C SINE Alu -3 130 1 439 305 43 30 chr11 69234129 69234293 -81549260 - L2 LINE L2 0 3272 3107 327 301 0 21 chr11 69236775 69236868 -81546685 + MIR SINE MIR 56 146 -62 329 159 0 14 chr11 69237534 69237603 -81545950 + GA-rich Low_complexity Low_complexity 1 68 0 210 143 0 0 chr11 69237941 69237976 -81545577 + (T)n Simple_repeat Simple_repeat 1 35 0 199 279 0 87 chr11 69238067 69238171 -81545382 - L2 LINE L2 -2802 512 418 201 74 0 0 chr11 69240366 69240393 -81543160 + (CA)n Simple_repeat Simple_repeat 2 28 0 352 257 9 28 chr11 69240686 69240795 -81542758 + CT-rich Low_complexity Low_complexity 4 110 0 456 91 0 0 chr11 69241149 69241215 -81542338 + (CA)n Simple_repeat Simple_repeat 2 67 0 370 323 24 0 chr11 69242679 69242803 -81540750 - MIR3 SINE MIR -47 161 35 510 241 42 15 chr11 69243058 69243202 -81540351 + MIR3 SINE MIR 57 205 -3 2202 82 61 0 chr11 69244071 69244365 -81539188 - AluSp SINE Alu 0 313 2 237 324 57 0 chr11 69245111 69245216 -81538337 - MIR SINE MIR -29 233 123 209 269 20 128 chr11 69245211 69245360 -81538193 + L2 LINE L2 2530 2662 -652 * 455 310 186 50 chr11 69245385 69246063 -81537490 + L2 LINE L2 2207 2976 -338 1760 160 7 3 chr11 69246122 69246409 -81537144 + AluJb SINE Alu 13 300 -12 6648 45 4 25 chr11 69246409 69247475 -81536078 + SVA Other Other 549 1386 0 930 169 85 0 chr11 69247481 69247658 -81535895 + AluJo SINE Alu 121 312 0 287 345 58 22 chr11 69247794 69247933 -81535620 + L2 LINE L2 3127 3270 -2 600 278 45 34 chr11 69247937 69248159 -81535394 - MIR SINE MIR 0 262 32 255 284 17 60 chr11 69248307 69248423 -81535130 + L2 LINE L2 2944 3054 -218 597 251 170 27 chr11 69248432 69248655 -81534898 - MIR SINE MIR -2 260 6 234 0 0 0 chr11 69249252 69249278 -81534275 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 531 0 0 0 chr11 69249277 69249336 -81534217 + (GA)n Simple_repeat Simple_repeat 2 60 0 304 299 84 0 chr11 69249977 69250084 -81533469 + MIR SINE MIR 107 222 -40 370 318 171 18 chr11 69250208 69250601 -81532952 + L2 LINE L2 2141 2593 -721 559 24 81 8 chr11 69250728 69250851 -81532702 + (TA)n Simple_repeat Simple_repeat 1 132 0 2361 141 5 10 chr11 69250853 69251243 -81532310 - L1PA7 LINE L1 -13 6141 5754 185 163 82 20 chr11 69251572 69251621 -81531932 - MIR SINE MIR -70 192 141 755 108 0 0 chr11 69251621 69251723 -81531830 - AluSg/x SINE Alu -14 296 195 315 271 62 42 chr11 69251733 69251762 -81531791 - MIR SINE MIR -114 148 121 2166 64 22 51 chr11 69251762 69252073 -81531480 + AluY SINE Alu 1 302 -9 315 271 62 42 chr11 69252073 69252187 -81531366 - MIR SINE MIR -141 121 2 807 183 7 0 chr11 69252231 69252384 -81531169 - MIR SINE MIR -8 254 101 2266 86 3 17 chr11 69252479 69252781 -81530772 + AluSp SINE Alu 1 298 -15 198 278 31 52 chr11 69252790 69252887 -81530666 + L2 LINE L2 3173 3267 -5 2307 92 3 0 chr11 69253577 69253881 -81529672 + AluSx SINE Alu 1 305 -7 400 270 30 0 chr11 69254349 69254449 -81529104 - L2 LINE L2 -1 3312 3210 2307 113 0 0 chr11 69254564 69254875 -81528678 - AluSx SINE Alu -1 311 1 219 36 0 0 chr11 69254905 69254933 -81528620 + (CA)n Simple_repeat Simple_repeat 1 28 0 189 107 0 0 chr11 69258307 69258335 -81525218 + (CAG)n Simple_repeat Simple_repeat 1 28 0 38 0 0 0 chr11 69258372 69258410 -81525143 + GC_rich Low_complexity Low_complexity 1 38 0 28 29 0 0 chr11 69258552 69258587 -81524966 + GC_rich Low_complexity Low_complexity 1 35 0 324 286 3 63 chr11 69259622 69259788 -81523765 + GA-rich Low_complexity Low_complexity 1 270 0 407 302 106 26 chr11 69259849 69260038 -81523515 - MIR SINE MIR -31 231 28 276 301 78 16 chr11 69262362 69262521 -81521032 - MIR3 SINE MIR -32 230 64 404 275 87 22 chr11 69262645 69262783 -81520770 - MIR3 SINE MIR -32 176 30 766 271 10 71 chr11 69263097 69263392 -81520161 + L3 LINE CR1 1277 1553 -24 883 226 119 13 chr11 69263563 69263798 -81519755 + MIR SINE MIR 1 260 -2 480 315 0 66 chr11 69263861 69264058 -81519495 - MIR SINE MIR -71 191 8 224 307 0 93 chr11 69264560 69264700 -81518853 + MIR SINE MIR 136 262 0 308 225 62 0 chr11 69264720 69264800 -81518753 - MIR SINE MIR -70 192 108 234 196 0 22 chr11 69266292 69266338 -81517215 + CT-rich Low_complexity Low_complexity 2 46 0 251 228 18 0 chr11 69267171 69267228 -81516325 + CT-rich Low_complexity Low_complexity 2 59 0 251 268 9 36 chr11 69267521 69267633 -81515920 + C-rich Low_complexity Low_complexity 2 110 0 32 26 0 0 chr11 69267757 69267796 -81515757 + GC_rich Low_complexity Low_complexity 1 39 0 300 27 0 0 chr11 69269644 69269681 -81513872 + (CA)n Simple_repeat Simple_repeat 1 37 0 318 148 0 0 chr11 69270210 69270264 -81513289 + (CA)n Simple_repeat Simple_repeat 2 55 0 268 300 89 11 chr11 69271207 69271297 -81512256 + L3 LINE CR1 1428 1524 -53 2232 97 0 13 chr11 69272167 69272475 -81511078 - AluSx SINE Alu -8 304 1 2562 41 0 19 chr11 69273076 69273391 -81510162 - AluY SINE Alu -2 309 1 2253 92 3 0 chr11 69273992 69274296 -81509257 - AluSx SINE Alu -7 305 1 183 42 0 0 chr11 69274360 69274384 -81509169 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 242 223 170 21 chr11 69274972 69275066 -81508487 + MIR3 SINE MIR 4 111 -97 664 246 63 19 chr11 69275380 69275587 -81507966 + MIR SINE MIR 22 237 -25 1555 268 61 16 chr11 69275721 69275734 -81507819 + L1MC4a LINE L1 5041 5052 -1094 2155 114 0 10 chr11 69275734 69276042 -81507511 + AluSg SINE Alu 1 305 -5 1555 268 61 16 chr11 69276042 69276850 -81506703 + L1MC4a LINE L1 5052 5399 -747 2144 93 0 59 chr11 69276893 69277036 -81506517 + AluSx SINE Alu 1 151 -151 2351 71 0 13 chr11 69277036 69277171 -81506382 + AluSq SINE Alu 1 136 -177 2154 87 42 0 chr11 69277171 69277460 -81506093 + AluY SINE Alu 1 301 -10 2351 71 0 13 chr11 69277460 69277635 -81505918 + AluSq SINE Alu 136 307 -6 2144 93 0 59 chr11 69277635 69277812 -81505741 + AluSx SINE Alu 151 302 0 723 276 57 54 chr11 69277831 69278055 -81505498 + L1MEd LINE L1 50 277 -5842 423 0 0 0 chr11 69278055 69278102 -81505451 + (CA)n Simple_repeat Simple_repeat 2 48 0 723 276 57 54 chr11 69278102 69278283 -81505270 + L1MEd LINE L1 277 456 -5663 1819 158 0 16 chr11 69278497 69278689 -81504864 - AluJb SINE Alu 0 312 125 2092 144 0 0 chr11 69278689 69278988 -81504565 + AluSx SINE Alu 1 299 -13 1819 158 0 16 chr11 69278988 69279112 -81504441 - AluJb SINE Alu -187 125 1 278 250 14 28 chr11 69279666 69279738 -81503815 - MIR3 SINE MIR -43 165 95 196 308 92 0 chr11 69280454 69280519 -81503034 + L3 LINE CR1 1504 1574 -3 2170 100 0 34 chr11 69282047 69282367 -81501186 + AluSc SINE Alu 1 309 0 409 247 41 132 chr11 69282374 69282429 -81501124 + L1ME3A LINE L1 5725 5783 -387 1786 148 34 0 chr11 69282429 69282720 -81500833 + AluSx SINE Alu 1 301 -11 409 247 41 132 chr11 69282720 69283088 -81500465 + L1ME3A LINE L1 5783 6105 -65 2032 130 3 10 chr11 69283088 69283396 -81500157 - AluSx SINE Alu -6 306 1 409 247 41 132 chr11 69283396 69283457 -81500096 + L1ME3A LINE L1 6105 6170 0 1719 127 16 73 chr11 69283499 69283815 -81499738 + AluJo SINE Alu 1 298 -14 392 352 56 11 chr11 69283815 69283994 -81499559 + MIR SINE MIR 24 210 -52 189 267 0 0 chr11 69284901 69284946 -81498607 - L2 LINE L2 -17 3255 3211 762 209 31 6 chr11 69284992 69285155 -81498398 - L2 LINE L2 -2 3270 3104 202 328 0 16 chr11 69285464 69285525 -81498028 - L2 LINE L2 -548 2766 2707 201 229 0 0 chr11 69286286 69286334 -81497219 + G-rich Low_complexity Low_complexity 1 48 0 383 214 60 0 chr11 69289073 69289157 -81494396 + MIR SINE MIR 60 148 -114 27 49 0 0 chr11 69289301 69289342 -81494211 + GC_rich Low_complexity Low_complexity 1 41 0 377 219 13 52 chr11 69289422 69289577 -81493976 + C-rich Low_complexity Low_complexity 6 154 0 25 51 0 0 chr11 69289670 69289709 -81493844 + GC_rich Low_complexity Low_complexity 1 39 0 212 250 132 13 chr11 69290513 69290589 -81492964 + MIR3 SINE MIR 108 192 -16 196 286 0 0 chr11 69292191 69292233 -81491320 - MIR SINE MIR -110 152 111 2263 89 3 10 chr11 69292415 69292719 -81490834 + AluSx SINE Alu 1 302 -10 864 238 64 11 chr11 69293093 69293374 -81490179 + L1ME4a LINE L1 5532 5827 -294 2135 105 10 0 chr11 69293426 69293722 -81489831 + AluSx SINE Alu 1 299 -13 2093 108 3 0 chr11 69293724 69294019 -81489534 + AluSx SINE Alu 1 296 -16 2339 60 0 0 chr11 69294019 69294337 -81489216 + AluY SINE Alu 1 318 0 2425 67 0 0 chr11 69294452 69294750 -81488803 - AluY SINE Alu -12 299 2 2426 86 0 6 chr11 69295536 69295851 -81487702 - AluSq SINE Alu 0 313 1 264 175 16 48 chr11 69296406 69296469 -81487084 + MIR SINE MIR 90 150 -112 455 231 96 6 chr11 69296838 69296994 -81486559 - MER117 DNA MER1_type -27 170 1 397 293 207 12 chr11 69297524 69297688 -81485865 - MER91A DNA MER1_type 0 196 1 245 349 12 0 chr11 69300307 69300390 -81483163 + MIR SINE MIR 40 123 -85 218 315 63 9 chr11 69300816 69300927 -81482626 - MIR SINE MIR -61 147 31 2136 130 0 7 chr11 69301104 69301412 -81482141 - AluSx SINE Alu -6 306 1 855 181 24 24 chr11 69301456 69301622 -81481931 - AluJo SINE Alu 0 302 137 255 128 0 0 chr11 69301625 69301672 -81481881 - AluJo SINE Alu -1 301 255 1381 137 10 0 chr11 69301672 69301877 -81481676 - AluJo SINE Alu -100 212 6 840 168 0 0 chr11 69301884 69302015 -81481538 - AluJo SINE Alu -169 133 3 409 240 13 50 chr11 69302234 69302389 -81481164 + MIR SINE MIR 27 178 -30 290 311 176 0 chr11 69303505 69303624 -81479929 + MIR SINE MIR 27 166 -96 250 261 29 14 chr11 69303739 69303808 -81479745 - MIR SINE MIR -81 127 58 205 100 0 50 chr11 69304813 69304853 -81478700 + (GGGGA)n Simple_repeat Simple_repeat 4 41 0 301 279 0 90 chr11 69305677 69305799 -81477754 + MIR SINE MIR 59 169 -93 2265 90 10 3 chr11 69306033 69306332 -81477221 - AluSq SINE Alu -12 301 1 2331 80 7 0 chr11 69306638 69306938 -81476615 + AluSx SINE Alu 1 302 -10 21 36 0 0 chr11 69310519 69310547 -81473006 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 69317051 69317073 -81466480 + AT_rich Low_complexity Low_complexity 1 22 0 2257 89 0 10 chr11 69319412 69319715 -81463838 + AluSc SINE Alu 1 300 -9 38 98 0 0 chr11 69322569 69322691 -81460862 + GC_rich Low_complexity Low_complexity 1 122 0 21 0 0 0 chr11 69322727 69322748 -81460805 + GC_rich Low_complexity Low_complexity 1 21 0 422 191 12 12 chr11 69322761 69322929 -81460624 + (CGG)n Simple_repeat Simple_repeat 3 170 0 25 0 0 0 chr11 69322971 69322996 -81460557 + GC_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr11 69323248 69323270 -81460283 + GC_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr11 69323299 69323335 -81460218 + GC_rich Low_complexity Low_complexity 1 36 0 225 0 0 0 chr11 69323979 69324004 -81459549 + (A)n Simple_repeat Simple_repeat 1 25 0 2107 101 14 0 chr11 69324202 69324498 -81459055 + AluSg SINE Alu 1 300 -10 1873 110 4 4 chr11 69324598 69324870 -81458683 + AluSx SINE Alu 40 311 -1 347 244 71 10 chr11 69325121 69325318 -81458235 + L1 LINE L1 5191 5399 -747 1124 222 83 38 chr11 69325413 69325661 -81457892 + LTR24B LTR ERV1 81 316 -260 2041 141 3 0 chr11 69325661 69325967 -81457586 - AluSx SINE Alu -5 307 1 1124 222 83 38 chr11 69325967 69326187 -81457366 + LTR24B LTR ERV1 316 570 -6 364 62 0 0 chr11 69326186 69326234 -81457319 + MSTD LTR MaLR 7 54 -342 * 628 47 153 0 chr11 69326235 69326320 -81457233 + AluS SINE Alu 3 100 -213 1495 81 5 5 chr11 69326320 69326517 -81457036 - AluSq SINE Alu -116 197 1 280 81 0 129 chr11 69326519 69326546 -81457007 + MSTB2 LTR MaLR 388 404 -53 1594 153 52 35 chr11 69326546 69326834 -81456719 + AluJo SINE Alu 1 293 -19 280 81 0 129 chr11 69326834 69326868 -81456685 + MSTB2 LTR MaLR 404 441 -16 680 156 156 0 chr11 69327092 69327220 -81456333 + AluJb SINE Alu 154 301 -11 337 299 71 25 chr11 69327221 69327418 -81456135 + L1MC/D LINE L1 5611 5816 -1992 2300 102 0 0 chr11 69327644 69327948 -81455605 - AluSx SINE Alu -8 304 1 1887 132 16 22 chr11 69328055 69328366 -81455187 + AluJo SINE Alu 1 309 -3 2384 72 0 13 chr11 69328366 69328671 -81454882 + AluY SINE Alu 1 301 -10 1451 197 14 7 chr11 69328679 69328963 -81454590 + AluJb SINE Alu 11 296 -16 1950 155 0 3 chr11 69328963 69329272 -81454281 + AluSx SINE Alu 1 308 -4 2146 86 35 3 chr11 69329275 69329565 -81453988 + AluSx SINE Alu 1 299 -13 1887 227 28 21 chr11 69329565 69330128 -81453425 + L1ME1 LINE L1 5596 6162 -4 2117 141 0 0 chr11 69330317 69330623 -81452930 - AluJo SINE Alu -2 310 5 300 308 59 77 chr11 69330632 69330853 -81452700 - L1ME3 LINE L1 -2 6160 5944 568 292 15 49 chr11 69331383 69331647 -81451906 + L1MC4a LINE L1 5566 5820 -1988 2429 65 0 3 chr11 69331761 69332067 -81451486 - AluSg SINE Alu -5 305 1 322 316 126 6 chr11 69332067 69332241 -81451312 + L1MC4a LINE L1 5855 6049 -1759 21 36 0 0 chr11 69332297 69332325 -81451228 + AT_rich Low_complexity Low_complexity 1 28 0 232 313 88 14 chr11 69335301 69335448 -81448105 - MIR SINE MIR -72 190 33 * 376 297 25 52 chr11 69335407 69335592 -81447961 + MIR SINE MIR 15 194 -68 2249 112 0 0 chr11 69335592 69335904 -81447649 + AluSx SINE Alu 1 312 0 376 297 25 52 chr11 69335904 69335940 -81447613 + MIR SINE MIR 194 229 -33 1813 153 37 0 chr11 69336109 69336409 -81447144 - AluJo SINE Alu -1 311 1 378 264 129 16 chr11 69337222 69337349 -81446204 - MIR SINE MIR -61 147 37 687 305 21 0 chr11 69337383 69337573 -81445980 + MIR SINE MIR 50 243 -19 2297 104 3 0 chr11 69337674 69337982 -81445571 + AluSp SINE Alu 2 310 -3 188 279 66 0 chr11 69338057 69338118 -81445435 - MIR SINE MIR -63 145 81 621 259 146 46 chr11 69338772 69339088 -81444465 + L2 LINE L2 2189 2549 -765 2288 90 7 0 chr11 69339088 69339398 -81444155 - AluSx SINE Alu 0 312 1 621 259 146 46 chr11 69339398 69339451 -81444102 + L2 LINE L2 2549 2595 -719 1282 186 12 105 chr11 69339625 69339822 -81443731 - AluJo SINE Alu -10 302 88 2234 110 0 0 chr11 69339822 69340122 -81443431 - AluSg SINE Alu -10 300 1 2152 82 6 32 chr11 69340125 69340440 -81443113 - AluSc SINE Alu 0 309 3 1282 186 12 105 chr11 69340440 69340571 -81442982 - AluJo SINE Alu -226 86 1 207 313 60 0 chr11 69340689 69340756 -81442797 + L2 LINE L2 3193 3263 -9 229 293 67 73 chr11 69340801 69340965 -81442588 - MIR SINE MIR -50 212 50 2365 71 0 0 chr11 69342439 69342735 -81440818 - AluY SINE Alu -4 307 12 1965 109 34 17 chr11 69342743 69342901 -81440652 - AluSq SINE Alu -14 299 132 2171 102 3 3 chr11 69342901 69343205 -81440348 - AluSg SINE Alu -6 304 1 1965 109 34 17 chr11 69343205 69343340 -81440213 - AluSq SINE Alu -181 132 1 1052 103 0 0 chr11 69343340 69343476 -81440077 - AluSq/x SINE Alu -177 136 1 180 0 0 0 chr11 69343662 69343682 -81439871 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 358 275 96 72 chr11 69344471 69344638 -81438915 - MIR SINE MIR -34 228 58 248 294 59 29 chr11 69346171 69346273 -81437280 - MIR SINE MIR -58 150 60 265 318 45 0 chr11 69346980 69347090 -81436463 - MIR SINE MIR -59 149 35 186 217 87 0 chr11 69347440 69347486 -81436067 + MIR SINE MIR 116 165 -97 201 227 0 0 chr11 69347686 69347730 -81435823 + G-rich Low_complexity Low_complexity 6 49 0 180 77 0 0 chr11 69347901 69347927 -81435626 + (CGGG)n Simple_repeat Simple_repeat 1 26 0 195 69 0 0 chr11 69347940 69347969 -81435584 + (CGGGG)n Simple_repeat Simple_repeat 2 30 0 25 0 0 0 chr11 69348005 69348030 -81435523 + GC_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr11 69348055 69348090 -81435463 + GC_rich Low_complexity Low_complexity 1 35 0 312 274 46 50 chr11 69352105 69352304 -81431249 - MIR SINE MIR -47 215 9 333 291 60 8 chr11 69353220 69353354 -81430199 - MER117 DNA MER1_type -56 141 1 2222 72 0 33 chr11 69353403 69353708 -81429845 + AluY SINE Alu 1 295 -16 1852 125 10 14 chr11 69353727 69354023 -81429530 + AluJb SINE Alu 9 303 -9 386 204 95 18 chr11 69354182 69354319 -81429234 + MIR SINE MIR 31 173 -62 1093 118 0 17 chr11 69355838 69356016 -81427537 - AluJb SINE Alu -13 299 125 348 232 14 3 chr11 69356021 69356109 -81427444 - L1MC4 LINE L1 -1337 6985 1977 872 125 0 8 chr11 69356132 69356260 -81427293 + AluSg/x SINE Alu 162 288 -22 1271 122 0 6 chr11 69356261 69356441 -81427112 - AluSq SINE Alu -134 179 1 2141 108 0 13 chr11 69356450 69356755 -81426798 - AluSx SINE Alu -11 301 1 311 253 61 30 chr11 69356819 69356918 -81426635 - L2 LINE L2 -2 3311 3210 1145 169 18 59 chr11 69356927 69357060 -81426493 + L1MD3 LINE L1 7538 7656 -339 1699 164 17 0 chr11 69357060 69357353 -81426200 + AluJo SINE Alu 14 311 -1 1145 169 18 59 chr11 69357353 69357492 -81426061 + L1MD3 LINE L1 7656 7799 -196 1916 114 7 4 chr11 69357569 69357877 -81425676 - AluSx SINE Alu 0 320 12 1410 180 63 37 chr11 69357899 69358199 -81425354 + AluJo SINE Alu 1 308 -4 2479 80 0 0 chr11 69358203 69358515 -81425038 + AluSx SINE Alu 1 312 0 492 253 306 22 chr11 69358522 69358842 -81424711 - L2 LINE L2 -1450 1864 1454 192 252 95 75 chr11 69358877 69359024 -81424529 + L2 LINE L2 2968 3117 -196 1983 136 13 3 chr11 69359025 69359333 -81424220 - AluSx SINE Alu -1 311 1 180 0 0 0 chr11 69359348 69359368 -81424185 + (TTG)n Simple_repeat Simple_repeat 2 21 0 928 173 35 15 chr11 69359419 69359616 -81423937 - MER20 DNA MER1_type -17 202 2 894 188 11 11 chr11 69359639 69359820 -81423733 - AluJb SINE Alu -14 298 118 623 206 16 8 chr11 69359820 69359946 -81423607 + L2 LINE L2 3183 3309 -4 2239 113 0 0 chr11 69359999 69360309 -81423244 - AluSx SINE Alu -2 310 1 711 234 30 5 chr11 69360309 69360506 -81423047 - L2 LINE L2 -2259 1055 854 273 151 94 0 chr11 69360506 69360559 -81422994 + AluS SINE Alu 1 58 -245 1395 78 0 0 chr11 69360559 69360738 -81422815 + AluSg/x SINE Alu 127 305 -5 271 182 0 45 chr11 69360738 69360804 -81422749 - L2 LINE L2 -2450 864 802 226 242 32 0 chr11 69360804 69360866 -81422687 - MER33 DNA MER1_type 0 363 300 1207 98 18 0 chr11 69360866 69361029 -81422524 - AluSg/x SINE Alu -16 296 131 790 204 64 49 chr11 69361030 69361055 -81422498 - MER33 DNA MER1_type -2316 269 246 1650 164 25 41 chr11 69361055 69361372 -81422181 + AluJo SINE Alu 1 312 0 790 204 64 49 chr11 69361372 69361463 -81422090 - MER33 DNA MER1_type -2339 246 158 2262 89 0 0 chr11 69361463 69361755 -81421798 + AluY SINE Alu 1 292 -19 2211 109 0 6 chr11 69361760 69362073 -81421480 + AluSx SINE Alu 2 312 0 790 204 64 49 chr11 69362073 69362214 -81421339 - MER33 DNA MER1_type -2430 155 1 1257 253 125 80 chr11 69362217 69362971 -81420582 - L2 LINE L2 -2506 808 21 23 0 0 0 chr11 69363147 69363170 -81420383 + AT_rich Low_complexity Low_complexity 1 23 0 2342 90 0 3 chr11 69363190 69363500 -81420053 - AluSc SINE Alu 0 309 1 1418 153 29 62 chr11 69363580 69363855 -81419698 + AluJo SINE Alu 4 269 -43 697 185 0 0 chr11 69363866 69363974 -81419579 - FLAM_C SINE Alu -30 113 6 237 119 0 0 chr11 69364001 69364043 -81419510 - MLT1C LTR MaLR -31 436 395 920 131 15 0 chr11 69364045 69364182 -81419371 - AluJo SINE Alu -173 139 1 364 251 81 62 chr11 69364186 69364343 -81419210 + L1MC4 LINE L1 7813 7966 -76 2573 58 0 0 chr11 69364343 69364654 -81418899 - AluY SINE Alu 0 311 1 2141 108 3 20 chr11 69364654 69364959 -81418594 - AluSx SINE Alu -12 300 1 1987 125 7 0 chr11 69364969 69365269 -81418284 - AluSx SINE Alu 0 302 1 364 251 81 62 chr11 69365269 69365309 -81418244 + L1MC4 LINE L1 7974 8027 -15 2371 70 0 0 chr11 69365316 69365614 -81417939 + AluY SINE Alu 1 298 -13 962 199 0 0 chr11 69365916 69366082 -81417471 - AluJo SINE Alu 0 302 137 2093 93 40 0 chr11 69366092 69366370 -81417183 - AluSg SINE Alu -16 294 6 348 240 256 0 chr11 69366375 69366496 -81417057 - MIR SINE MIR -96 166 15 713 259 197 60 chr11 69366793 69366885 -81416668 + LTR33 LTR ERVL 5 83 -438 2318 78 0 3 chr11 69366885 69367179 -81416374 - AluSq SINE Alu -15 298 6 601 186 81 8 chr11 69367186 69367310 -81416243 - AluJo SINE Alu -169 133 1 713 259 197 60 chr11 69367310 69367646 -81415907 + LTR33 LTR ERVL 88 501 -20 2635 42 0 0 chr11 69367788 69368098 -81415455 - AluY SINE Alu 0 311 2 370 249 5 69 chr11 69368526 69368715 -81414838 + CT-rich Low_complexity Low_complexity 2 178 0 1088 145 0 17 chr11 69369459 69369631 -81413922 - AluSg/x SINE Alu -10 302 134 2170 113 17 0 chr11 69369631 69369933 -81413620 - AluSx SINE Alu -5 307 1 306 336 83 22 chr11 69370108 69370385 -81413168 - L2 LINE L2 -159 3113 2820 2039 137 3 7 chr11 69370500 69370806 -81412747 + AluSx SINE Alu 1 305 -7 470 287 153 25 chr11 69370828 69371030 -81412523 - MIR SINE MIR -22 240 13 457 296 50 25 chr11 69372666 69372865 -81410688 - MIR SINE MIR -20 242 39 201 171 0 0 chr11 69372996 69373031 -81410522 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 1740 143 10 23 chr11 69373346 69373483 -81410070 + AluJb SINE Alu 1 138 -174 2187 93 3 10 chr11 69373483 69373784 -81409769 + AluSg SINE Alu 1 299 -11 1740 143 10 23 chr11 69373784 69373946 -81409607 + AluJb SINE Alu 138 296 -16 468 318 27 0 chr11 69375170 69375318 -81408235 + MIR SINE MIR 79 230 -32 2291 107 0 0 chr11 69375649 69375957 -81407596 + AluSx SINE Alu 1 308 -4 215 280 19 141 chr11 69376548 69376916 -81406637 - L2 LINE L2 -120 3152 2830 222 311 54 0 chr11 69379398 69379472 -81404081 + MIR SINE MIR 58 135 -73 237 85 34 51 chr11 69381084 69381143 -81402410 + (CCCA)n Simple_repeat Simple_repeat 2 59 0 248 274 27 14 chr11 69381335 69381408 -81402145 - MIR SINE MIR -88 120 47 201 129 0 0 chr11 69381421 69381452 -81402101 + (G)n Simple_repeat Simple_repeat 1 31 0 325 333 111 18 chr11 69381893 69382064 -81401489 + MIR SINE MIR 12 198 -64 2223 70 7 3 chr11 69382194 69382479 -81401074 - AluSx SINE Alu -26 286 1 437 412 20 12 chr11 69384518 69384768 -81398785 + MIR SINE MIR 7 258 -4 213 364 0 42 chr11 69385451 69385569 -81397984 + MIR SINE MIR 33 145 -63 2008 109 0 7 chr11 69385603 69385877 -81397676 + AluSx SINE Alu 21 292 -20 2143 111 3 16 chr11 69385887 69386202 -81397351 + AluSx SINE Alu 1 311 -1 180 286 0 20 chr11 69386572 69386621 -81396932 + MIR SINE MIR 106 153 -55 258 289 31 0 chr11 69389318 69389415 -81394138 + (CCCG)n Simple_repeat Simple_repeat 2 101 0 233 255 10 29 chr11 69389374 69389476 -81394077 + C-rich Low_complexity Low_complexity 2 101 0 * 21 36 0 0 chr11 69389531 69389559 -81393994 + GC_rich Low_complexity Low_complexity 1 28 0 1655 158 45 14 chr11 69390306 69390597 -81392956 - AluJo SINE Alu -12 300 1 1863 154 0 14 chr11 69390607 69390773 -81392780 - AluJb SINE Alu -15 297 135 2138 119 0 0 chr11 69390773 69391066 -81392487 - AluSx SINE Alu -19 293 1 1863 154 0 14 chr11 69391066 69391191 -81392362 - AluJb SINE Alu -177 135 10 213 39 0 0 chr11 69391352 69391378 -81392175 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 709 138 26 17 chr11 69391381 69391497 -81392056 - AluSq/x SINE Alu -195 117 1 1314 157 0 9 chr11 69391497 69391714 -81391839 - AluJo SINE Alu -23 289 75 252 182 36 0 chr11 69392146 69392201 -81391352 + MIR SINE MIR 59 115 -147 232 256 171 31 chr11 69392230 69392359 -81391194 - MIR3 SINE MIR -47 161 15 213 235 59 0 chr11 69392373 69392424 -81391129 + MIR SINE MIR 100 153 -55 908 142 0 8 chr11 69392426 69392560 -81390993 + AluJo SINE Alu 3 135 -177 1796 188 0 0 chr11 69392560 69392869 -81390684 + AluSx SINE Alu 1 309 -3 202 331 106 21 chr11 69393952 69394094 -81389459 + MIR SINE MIR 41 194 -68 189 125 50 25 chr11 69394785 69394825 -81388728 - MIR SINE MIR -181 81 41 1971 148 0 0 chr11 69394960 69395264 -81388289 - AluSx SINE Alu -8 304 1 1416 139 9 126 chr11 69395383 69395700 -81387853 - AluJo SINE Alu -20 292 13 203 206 82 82 chr11 69400870 69400943 -81382610 - MIR3 SINE MIR -135 73 1 2300 91 7 0 chr11 69401883 69402191 -81381362 + AluSq SINE Alu 3 312 -1 870 135 0 57 chr11 69402770 69402911 -81380642 - FLAM_C SINE Alu 0 133 1 356 290 257 11 chr11 69402920 69403192 -81380361 + L2 LINE L2 2932 3270 -43 193 240 67 13 chr11 69403505 69403580 -81379973 - MIR SINE MIR -74 134 56 1701 175 0 25 chr11 69403920 69404234 -81379319 - AluJo SINE Alu -6 306 1 363 304 20 0 chr11 69405591 69405693 -81377860 - MIR SINE MIR -72 136 33 852 189 31 6 chr11 69405796 69405955 -81377598 + FRAM SINE Alu 1 163 -13 2185 66 0 30 chr11 69406032 69406336 -81377217 - AluY SINE Alu -16 295 1 1989 134 3 10 chr11 69406420 69406725 -81376828 - AluJb SINE Alu -9 303 1 25 0 0 0 chr11 69406725 69406750 -81376803 + AT_rich Low_complexity Low_complexity 1 25 0 1514 131 33 20 chr11 69406750 69406995 -81376558 - AluJb SINE Alu -64 248 1 1880 148 7 3 chr11 69407676 69407967 -81375586 + AluJb SINE Alu 1 292 -20 231 36 0 0 chr11 69407968 69407996 -81375557 + (TA)n Simple_repeat Simple_repeat 1 28 0 2185 97 3 3 chr11 69408012 69408311 -81375242 + AluSg SINE Alu 1 299 -11 890 148 7 19 chr11 69408800 69408955 -81374598 - AluSg/x SINE Alu 0 309 157 407 318 0 40 chr11 69409050 69409201 -81374352 + MIR SINE MIR 117 261 -1 1388 126 119 45 chr11 69409213 69409482 -81374071 - AluJo SINE Alu -21 291 3 1937 106 10 20 chr11 69409578 69409880 -81373673 - AluY SINE Alu -12 299 1 852 184 95 0 chr11 69410136 69410304 -81373249 + AluSg/x SINE Alu 122 305 -7 1088 130 155 5 chr11 69410308 69410508 -81373045 + AluSx SINE Alu 1 230 -82 245 349 12 0 chr11 69412399 69412482 -81371071 + MIR SINE MIR 40 123 -85 218 315 63 9 chr11 69412908 69413019 -81370534 - MIR SINE MIR -61 147 31 2154 123 0 7 chr11 69413196 69413504 -81370049 - AluSx SINE Alu -6 306 1 280 81 0 129 chr11 69413506 69413533 -81370020 + MSTB2 LTR MaLR 388 404 -53 1579 156 52 35 chr11 69413533 69413821 -81369732 + AluJo SINE Alu 1 293 -19 280 81 0 129 chr11 69413821 69413855 -81369698 + MSTB2 LTR MaLR 404 441 -16 680 156 156 0 chr11 69414079 69414207 -81369346 + AluJb SINE Alu 154 301 -11 337 299 71 25 chr11 69414208 69414405 -81369148 + L1MC/D LINE L1 5611 5816 -1992 2309 102 0 0 chr11 69414632 69414937 -81368616 - AluSx SINE Alu -7 305 1 1293 145 26 30 chr11 69415044 69415278 -81368275 + AluJo SINE Alu 1 233 -79 1940 130 7 7 chr11 69467037 69467329 -81316224 - AluJb SINE Alu -20 292 1 182 111 0 0 chr11 69467865 69467892 -81315661 + MIR SINE MIR 97 123 -85 2295 78 0 3 chr11 69467893 69468189 -81315364 - AluSg SINE Alu -15 295 1 1367 150 35 0 chr11 69468189 69468415 -81315138 - AluJb SINE Alu -16 296 63 1722 205 71 25 chr11 69468434 69468873 -81314680 + LTR2B LTR ERV1 32 490 0 465 92 15 0 chr11 69468873 69468938 -81314615 - AluS SINE Alu -247 66 1 342 188 94 24 chr11 69468939 69469024 -81314529 - L1ME LINE L1 -506 5615 5525 298 231 58 39 chr11 69469139 69469243 -81314310 + L2 LINE L2 2286 2391 -923 189 0 0 0 chr11 69471176 69471197 -81312356 + (A)n Simple_repeat Simple_repeat 1 21 0 2055 127 7 0 chr11 69471232 69471531 -81312022 - AluSp SINE Alu -12 301 1 730 277 45 32 chr11 69471962 69472272 -81311281 - AluYb8 SINE Alu 0 318 5 41 23 0 0 chr11 69472568 69472611 -81310942 + AT_rich Low_complexity Low_complexity 1 43 0 1742 171 0 0 chr11 69472860 69473141 -81310412 + AluJb SINE Alu 2 282 -30 563 103 13 0 chr11 69473142 69473220 -81310333 - AluSg/x SINE Alu -54 258 180 688 222 56 0 chr11 69473276 69473420 -81310133 + MIR SINE MIR 34 185 -77 183 100 0 0 chr11 69474833 69474863 -81308690 + (CA)n Simple_repeat Simple_repeat 2 31 0 799 148 8 0 chr11 69474864 69474986 -81308567 - FLAM_C SINE Alu -20 123 1 387 269 7 54 chr11 69475033 69475182 -81308371 - MER104 DNA Tc2 -3 177 36 205 356 56 11 chr11 69475334 69475424 -81308129 - MIR SINE MIR -167 95 2 * 376 239 111 7 chr11 69475424 69475565 -81307988 + MIR SINE MIR 44 199 -63 215 244 158 12 chr11 69476466 69476548 -81307005 - MIR SINE MIR -73 135 42 316 152 31 2 chr11 69477249 69477318 -81306235 - MLT1F LTR MaLR -264 312 216 353 361 32 35 chr11 69477329 69477639 -81305914 - L2 LINE L2 -2130 1184 876 318 106 0 0 chr11 69478314 69478361 -81305192 + (CA)n Simple_repeat Simple_repeat 1 47 0 262 300 0 0 chr11 69478797 69478867 -81304686 + (TGGA)n Simple_repeat Simple_repeat 1 70 0 2092 112 3 0 chr11 69479178 69479472 -81304081 + AluSx SINE Alu 6 300 -12 244 250 50 38 chr11 69479473 69479553 -81304000 - MIR SINE MIR -142 120 40 295 286 40 32 chr11 69479608 69479734 -81303819 + MIR3 SINE MIR 3 129 -79 180 0 0 0 chr11 69479971 69479991 -81303562 + (CTGGGG)n Simple_repeat Simple_repeat 4 23 0 1981 125 10 7 chr11 69481454 69481758 -81301795 + AluSx SINE Alu 1 305 -7 1929 115 3 24 chr11 69481768 69482081 -81301472 + AluSx SINE Alu 5 311 0 756 171 94 0 chr11 69482103 69482273 -81301280 + L1MB3 LINE L1 5991 6176 -7 2191 104 3 0 chr11 69482285 69482584 -81300969 + AluSq SINE Alu 1 300 -13 219 197 13 26 chr11 69482606 69482682 -81300871 + GA-rich Low_complexity Low_complexity 3 77 0 1438 133 73 36 chr11 69482699 69483001 -81300552 - L1MB4 LINE L1 -77 6103 5791 1378 151 37 16 chr11 69483001 69483246 -81300307 - AluSx SINE Alu -2 310 61 356 285 10 21 chr11 69483356 69483558 -81299995 + G-rich Low_complexity Low_complexity 1 199 0 1217 131 30 15 chr11 69484209 69484407 -81299146 - AluSg/x SINE Alu -2 308 108 789 158 0 8 chr11 69484430 69484557 -81298996 + FLAM_C SINE Alu 5 130 -3 270 293 15 90 chr11 69484581 69484714 -81298839 + MIR SINE MIR 57 179 -83 1427 163 83 25 chr11 69484733 69485009 -81298544 + AluJo SINE Alu 3 294 -8 1892 145 3 3 chr11 69485011 69485322 -81298231 + AluSx SINE Alu 1 311 -1 232 331 75 15 chr11 69485325 69485458 -81298095 - MER112 DNA MER1_type -115 145 5 2244 42 28 3 chr11 69485458 69485743 -81297810 + AluSg SINE Alu 1 292 -18 21 36 0 0 chr11 69486025 69486053 -81297500 + GC_rich Low_complexity Low_complexity 1 28 0 1298 160 61 73 chr11 69487132 69487475 -81296078 - MER58B DNA MER1_type 0 341 3 2100 107 0 3 chr11 69487545 69487835 -81295718 + AluSx SINE Alu 1 289 -23 295 95 0 0 chr11 69488013 69488055 -81295498 - Alu SINE Alu -258 42 1 649 181 0 12 chr11 69488055 69488185 -81295368 - L1ME LINE L1 -366 5798 5674 414 252 39 39 chr11 69488175 69488330 -81295223 - L1MC/D LINE L1 -1988 5820 5666 * 209 292 118 31 chr11 69490380 69490561 -81292992 - L2 LINE L2 -438 2876 2659 2183 97 0 0 chr11 69490561 69490851 -81292702 + AluSg SINE Alu 1 290 -20 209 292 118 31 chr11 69490851 69490957 -81292596 - L2 LINE L2 -655 2659 2564 481 174 0 0 chr11 69491132 69491218 -81292335 - FLAM_C SINE Alu 0 143 58 672 150 36 36 chr11 69491257 69491397 -81292156 - L1MB3 LINE L1 -3 6180 6041 291 323 8 0 chr11 69491397 69491521 -81292032 - L1M4c LINE L1 -4206 2178 2054 1743 157 33 16 chr11 69491543 69491848 -81291705 + AluJb SINE Alu 3 312 0 413 200 125 0 chr11 69492059 69492179 -81291374 - L1MC4 LINE L1 -1 8041 7907 720 117 0 66 chr11 69492182 69492319 -81291234 + FLAM_C SINE Alu 2 129 -14 1561 120 4 12 chr11 69492472 69492713 -81290840 - AluSx SINE Alu -73 239 1 904 143 56 5 chr11 69492726 69492922 -81290631 - AluJb SINE Alu -13 299 94 1900 107 14 10 chr11 69493026 69493316 -81290237 - AluSx SINE Alu -21 291 1 650 181 37 48 chr11 69493328 69493516 -81290037 + L1M4b LINE L1 1369 1554 -5305 1259 164 75 36 chr11 69493520 69493825 -81289728 - L1M4 LINE L1 -1100 5046 4730 1829 141 37 0 chr11 69493829 69494127 -81289426 + AluSx SINE Alu 1 309 -3 1081 222 37 47 chr11 69494140 69494232 -81289321 - MLT2D LTR ERVL -118 296 205 2298 83 0 16 chr11 69494232 69494546 -81289007 - AluSc SINE Alu 0 309 1 1081 222 37 47 chr11 69494546 69494750 -81288803 - MLT2D LTR ERVL -209 205 3 2045 183 7 70 chr11 69494763 69495266 -81288287 - L1MC/D LINE L1 -667 5630 5345 450 161 0 0 chr11 69495313 69495394 -81288159 + MLT1F1 LTR MaLR 325 405 -162 2107 120 0 10 chr11 69495768 69496077 -81287476 + AluSp SINE Alu 1 306 -7 1213 111 0 0 chr11 69496077 69496239 -81287314 + AluSg/x SINE Alu 132 293 -17 2392 168 55 16 chr11 69496241 69496747 -81286806 + L1MC4a LINE L1 6709 7234 -574 413 125 11 91 chr11 69496747 69496835 -81286718 + MLT1A2 LTR MaLR 1 81 -347 1057 155 0 0 chr11 69496835 69497009 -81286544 - AluJb SINE Alu -6 306 133 741 216 39 73 chr11 69497097 69497233 -81286320 + MLT1A2 LTR MaLR 178 306 -68 2321 79 7 7 chr11 69497233 69497538 -81286015 + AluSq SINE Alu 2 306 -7 741 216 39 73 chr11 69497538 69497605 -81285948 + MLT1A2 LTR MaLR 306 374 0 1490 209 28 54 chr11 69497605 69497886 -81285667 + L1MC4a LINE L1 7230 7517 -291 1863 138 0 29 chr11 69497886 69498197 -81285356 + AluJo SINE Alu 1 302 -10 1490 209 28 54 chr11 69498197 69498247 -81285306 + L1MC4a LINE L1 7517 7567 -241 1819 201 137 27 chr11 69498247 69498512 -81285041 + MLT1F LTR MaLR 5 240 -302 1902 145 13 3 chr11 69498512 69498815 -81284738 - AluSx SINE Alu -6 306 1 1819 201 137 27 chr11 69498815 69499032 -81284521 + MLT1F LTR MaLR 240 540 -2 1490 209 28 54 chr11 69499032 69499124 -81284429 + L1MC4a LINE L1 7567 7643 -165 1262 153 14 14 chr11 69499124 69499347 -81284206 + AluSx SINE Alu 1 223 -89 341 271 80 45 chr11 69499724 69500060 -81283493 + L1M4 LINE L1 3130 3477 -2669 2025 82 0 73 chr11 69500061 69500376 -81283177 - AluSc SINE Alu -15 294 3 1810 160 0 13 chr11 69500378 69500684 -81282869 - AluJo SINE Alu -10 302 1 518 260 39 0 chr11 69500941 69501068 -81282485 - L2 LINE L2 0 3272 3141 2029 122 7 3 chr11 69501458 69501754 -81281799 + AluSc SINE Alu 1 297 -12 2284 97 0 0 chr11 69502795 69503103 -81280450 + AluSg SINE Alu 1 308 -2 3038 157 34 4 chr11 69503392 69503864 -81279689 - MER66B LTR ERV1 0 486 1 762 246 65 33 chr11 69504120 69504387 -81279166 + MLT1G1 LTR MaLR 5 324 -271 1259 108 0 21 chr11 69504388 69504574 -81278979 + U2 snRNA snRNA 6 187 -1 378 0 0 0 chr11 69504656 69504698 -81278855 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 497 204 66 30 chr11 69504703 69504901 -81278652 + MLT1G1 LTR MaLR 288 578 -6 2217 105 3 13 chr11 69504988 69505303 -81278250 + AluSx SINE Alu 1 312 0 204 171 14 29 chr11 69505689 69505759 -81277794 + G-rich Low_complexity Low_complexity 1 69 0 327 306 153 0 chr11 69508664 69508788 -81274765 - MIR SINE MIR -48 214 72 243 234 57 40 chr11 69508820 69508881 -81274672 + (TATG)n Simple_repeat Simple_repeat 2 60 -119 3839 111 42 12 chr11 69508881 69509459 -81274094 - LTR49 LTR ERV1 0 595 1 243 234 57 40 chr11 69509459 69509572 -81273981 + (TATG)n Simple_repeat Simple_repeat 60 179 0 240 347 7 20 chr11 69510510 69510660 -81272893 + C-rich Low_complexity Low_complexity 1 148 0 2259 98 0 16 chr11 69511434 69511741 -81271812 + AluSx SINE Alu 1 302 -10 216 359 111 0 chr11 69512590 69512707 -81270846 + MIR SINE MIR 59 188 -74 2012 117 14 0 chr11 69512857 69513147 -81270406 - AluSx SINE Alu -18 294 1 929 89 0 8 chr11 69513484 69513608 -81269945 - AluY SINE Alu -187 124 2 1093 118 72 30 chr11 69513661 69513911 -81269642 + Tigger4(Zombi) DNA MER2_type 1 2731 0 976 108 36 90 chr11 69513915 69513967 -81269586 - HSMAR2 DNA Mariner -9 1293 1240 1955 141 3 10 chr11 69513967 69514279 -81269274 + AluSg SINE Alu 1 310 0 976 108 36 90 chr11 69514279 69514448 -81269105 - HSMAR2 DNA Mariner -62 1240 1084 2034 135 0 6 chr11 69514449 69514761 -81268792 + AluSx SINE Alu 1 310 -2 809 135 0 47 chr11 69514778 69514794 -81268759 - FLAM_C SINE Alu -171 141 126 2389 73 0 0 chr11 69514794 69515094 -81268459 + AluY SINE Alu 1 300 -11 809 135 0 47 chr11 69515094 69515225 -81268328 - FLAM_C SINE Alu -186 126 1 744 90 0 0 chr11 69515226 69515337 -81268216 - HSMAR2 DNA Mariner -1189 113 3 1185 297 44 17 chr11 69515342 69515870 -81267683 + L1M4 LINE L1 3383 3924 -2222 2180 183 87 8 chr11 69516051 69516521 -81267032 - MLT1F1 LTR MaLR -27 540 34 2354 97 0 0 chr11 69516521 69516868 -81266685 + AluSg SINE Alu 1 347 0 318 235 100 145 chr11 69516901 69517174 -81266379 + L2 LINE L2 1099 1360 -1954 1746 148 36 7 chr11 69517174 69517477 -81266076 - AluJb SINE Alu 0 312 1 318 235 100 145 chr11 69517477 69517492 -81266061 + L2 LINE L2 1360 1374 -1940 904 161 0 0 chr11 69517578 69517721 -81265832 - FLAM_C SINE Alu 0 143 1 373 304 70 40 chr11 69517747 69517974 -81265579 + L2 LINE L2 3080 3313 0 296 250 91 0 chr11 69518074 69518162 -81265391 + L2 LINE L2 3141 3236 -36 611 254 16 78 chr11 69518751 69518801 -81264752 + MIR SINE MIR 8 60 -202 2095 115 0 7 chr11 69518801 69519105 -81264448 - AluSx SINE Alu -10 302 1 611 254 16 78 chr11 69519105 69519247 -81264306 + MIR SINE MIR 60 188 -74 2075 123 7 0 chr11 69519580 69519881 -81263672 + AluSq SINE Alu 1 303 -10 351 0 0 0 chr11 69520053 69520092 -81263461 + (A)n Simple_repeat Simple_repeat 1 39 0 381 332 10 20 chr11 69520128 69520429 -81263124 - AluSp SINE Alu -5 298 1 1529 156 0 44 chr11 69521261 69521531 -81262022 + AluJo SINE Alu 2 259 -53 598 176 0 0 chr11 69521531 69521622 -81261931 - AluSg/x SINE Alu -83 227 137 293 235 356 0 chr11 69522149 69522264 -81261289 - L1MC/D LINE L1 -2217 6402 6247 744 325 131 57 chr11 69522264 69522303 -81261250 - L1MC/D LINE L1 -1870 5087 5052 1978 126 3 43 chr11 69522303 69522629 -81260924 - AluSq SINE Alu 0 313 1 744 325 131 57 chr11 69522629 69523518 -81260035 - L1MC/D LINE L1 -1905 5052 4080 2146 73 38 0 chr11 69523518 69523805 -81259748 + AluSx SINE Alu 1 298 -14 744 325 131 57 chr11 69523805 69523858 -81259695 - L1MC/D LINE L1 -2877 4080 4032 2375 152 32 94 chr11 69523863 69524364 -81259189 - MER21A LTR ERV1 0 931 462 532 129 24 0 chr11 69524365 69524450 -81259103 + AluY SINE Alu 214 300 -11 1243 144 4 31 chr11 69524643 69524872 -81258681 - THE1C LTR MaLR 0 375 153 2316 91 0 0 chr11 69524872 69525170 -81258383 + AluY SINE Alu 2 299 -12 246 256 233 19 chr11 69525186 69525401 -81258152 - L2 LINE L2 -2568 746 486 626 136 2 2 chr11 69531802 69531912 -81251641 - L1P4 LINE L1 -400 5774 5665 2027 105 10 13 chr11 69531937 69532242 -81251311 - AluSx SINE Alu -8 304 1 463 261 6 55 chr11 69532242 69532407 -81251146 - L1MC/D LINE L1 -5488 1371 1215 878 191 29 0 chr11 69532431 69532604 -81250949 + AluJo SINE Alu 120 297 -15 507 218 62 67 chr11 69532775 69532882 -81250671 - L1MC/D LINE L1 -6671 188 81 2105 99 3 13 chr11 69532882 69533186 -81250367 + AluSg SINE Alu 1 301 -9 507 218 62 67 chr11 69533186 69533257 -81250296 - L1MC/D LINE L1 -6778 81 11 21 0 0 0 chr11 69533265 69533286 -81250267 + AT_rich Low_complexity Low_complexity 1 21 0 1288 166 166 30 chr11 69533374 69533507 -81250046 - AluJo SINE Alu 0 302 188 450 0 0 0 chr11 69533507 69533557 -81249996 + (TG)n Simple_repeat Simple_repeat 2 51 0 1288 166 166 30 chr11 69533557 69533688 -81249865 - AluJo SINE Alu -114 188 2 2088 99 3 3 chr11 69533721 69534015 -81249538 + AluSc SINE Alu 3 296 -13 454 341 45 29 chr11 69534015 69534261 -81249292 - L1M4 LINE L1 -3325 2821 2572 263 329 43 7 chr11 69534976 69535116 -81248437 - L1M4 LINE L1 -3069 3077 2933 2066 95 23 0 chr11 69535136 69535440 -81248113 - AluSq SINE Alu 0 313 3 228 35 0 0 chr11 69535648 69535677 -81247876 + (CA)n Simple_repeat Simple_repeat 2 30 0 241 266 28 0 chr11 69535775 69535884 -81247669 + CT-rich Low_complexity Low_complexity 1 112 0 399 265 85 99 chr11 69535972 69536029 -81247524 - L1M4 LINE L1 -3738 2408 2352 2104 137 0 3 chr11 69536029 69536342 -81247211 - AluSx SINE Alu 0 312 1 399 265 85 99 chr11 69536342 69536436 -81247117 - L1M4 LINE L1 -3794 2352 2258 1640 186 16 3 chr11 69536436 69536743 -81246810 - AluJo SINE Alu -1 311 1 399 265 85 99 chr11 69536743 69536873 -81246680 - L1M4 LINE L1 -3888 2258 2130 749 209 37 32 chr11 69536931 69537037 -81246516 + MLT1D LTR MaLR 1 110 -395 1959 138 0 0 chr11 69537037 69537328 -81246225 - AluSx SINE Alu -21 291 1 749 209 37 32 chr11 69537328 69537408 -81246145 + MLT1D LTR MaLR 110 188 -317 1601 115 146 0 chr11 69537413 69537674 -81245879 + AluSg SINE Alu 1 299 -1 237 295 63 132 chr11 69537953 69538143 -81245410 + MIR SINE MIR 21 197 -65 1856 71 75 34 chr11 69539352 69539646 -81243907 + AluSg SINE Alu 1 306 -4 181 259 204 28 chr11 69539701 69539809 -81243744 + MIR SINE MIR 117 243 -19 721 203 0 0 chr11 69540407 69540525 -81243028 + FLAM_C SINE Alu 1 118 -15 282 160 0 0 chr11 69540534 69540584 -81242969 + GA-rich Low_complexity Low_complexity 2 51 0 203 274 62 44 chr11 69542234 69542347 -81241206 + MIR SINE MIR 112 226 -36 2072 133 0 0 chr11 69542348 69542648 -81240905 + AluSx SINE Alu 1 300 -12 207 100 0 0 chr11 69542838 69542868 -81240685 + (T)n Simple_repeat Simple_repeat 1 30 0 1691 75 0 22 chr11 69544226 69544452 -81239101 - AluSg SINE Alu -89 221 1 434 235 59 0 chr11 69544452 69544571 -81238982 - L1MC/D LINE L1 -2317 5491 5366 552 135 0 42 chr11 69544571 69544667 -81238886 - AluJo SINE Alu 0 312 221 953 142 39 7 chr11 69544667 69544822 -81238731 - AluJo SINE Alu -124 188 29 1679 187 3 0 chr11 69544822 69545122 -81238431 - AluJo SINE Alu -9 303 3 2122 114 0 19 chr11 69545336 69545644 -81237909 - AluSq SINE Alu -11 302 1 2392 71 0 6 chr11 69545706 69546017 -81237536 - AluY SINE Alu -2 309 1 708 204 66 0 chr11 69546019 69546156 -81237397 - FRAM SINE Alu -12 164 19 1965 111 3 66 chr11 69546189 69546523 -81237030 - AluSq SINE Alu 0 313 1 635 310 91 52 chr11 69546584 69547023 -81236530 - L1MC/D LINE L1 -1159 4987 4532 2139 111 0 10 chr11 69547309 69547616 -81235937 - AluSq SINE Alu -9 304 1 2134 195 40 44 chr11 69547616 69548297 -81235256 - L1MC2 LINE L1 -140 6204 5521 2190 108 3 0 chr11 69548297 69548604 -81234949 + AluSx SINE Alu 4 311 -1 2134 195 40 44 chr11 69548604 69548831 -81234722 - L1MC2 LINE L1 -823 5521 5294 1741 186 0 3 chr11 69548831 69549132 -81234421 + AluJo SINE Alu 1 300 -12 2134 195 40 44 chr11 69549132 69549246 -81234307 - L1MC2 LINE L1 -1050 5294 4969 296 264 40 80 chr11 69549330 69549455 -81234098 + MIR3 SINE MIR 41 160 -48 217 294 63 48 chr11 69549854 69549980 -81233573 - MIR3 SINE MIR -3 205 78 288 287 108 18 chr11 69550695 69550862 -81232691 - L2 LINE L2 0 3313 3132 302 283 133 8 chr11 69550886 69551006 -81232547 - L2 LINE L2 -1295 2019 1885 232 283 80 26 chr11 69551168 69551281 -81232272 + MIR SINE MIR 125 243 -19 231 286 122 61 chr11 69551306 69551453 -81232100 - MIR SINE MIR -17 245 90 1907 104 7 29 chr11 69555132 69555439 -81228114 + AluSq SINE Alu 1 300 -13 245 282 65 57 chr11 69555515 69555639 -81227914 - L2 LINE L2 -6 3307 3183 463 307 110 15 chr11 69555681 69555945 -81227608 + L2 LINE L2 2569 2857 -457 1729 134 38 10 chr11 69556036 69556327 -81227226 + AluJo SINE Alu 1 299 -13 2215 98 3 0 chr11 69556327 69556634 -81226919 + AluSc SINE Alu 1 308 -1 2278 64 7 0 chr11 69559692 69559988 -81223565 - AluY SINE Alu -10 301 4 2399 120 90 40 chr11 69560313 69560425 -81223128 - MER65A LTR ERV1 0 445 340 2148 120 3 0 chr11 69560425 69560734 -81222819 + AluSx SINE Alu 1 310 -2 2399 120 90 40 chr11 69560734 69560855 -81222698 - MER65A LTR ERV1 -105 340 226 2101 105 10 10 chr11 69560855 69561159 -81222394 - AluSx SINE Alu -8 304 1 2399 120 90 40 chr11 69561159 69561348 -81222205 - MER65A LTR ERV1 -219 226 1 270 274 97 14 chr11 69561923 69562102 -81221451 + MIR SINE MIR 14 245 -17 245 258 16 0 chr11 69562227 69562289 -81221264 - L2 LINE L2 -20 3252 3190 2040 122 7 0 chr11 69563110 69563406 -81220147 - AluSx SINE Alu -14 298 1 751 197 15 7 chr11 69566072 69566209 -81217344 - AluJ SINE Alu -22 290 153 513 298 115 4 chr11 69568648 69568883 -81214670 + MIR SINE MIR 1 261 -1 212 280 254 30 chr11 69568890 69569154 -81214399 + L2 LINE L2 2939 3261 -11 1030 138 0 11 chr11 69572788 69572962 -81210591 - AluJ SINE Alu 0 312 141 886 241 131 42 chr11 69573344 69573895 -81209658 - L2 LINE L2 0 3313 2691 2234 84 3 3 chr11 69573895 69574204 -81209349 + AluY SINE Alu 1 309 -2 886 241 131 42 chr11 69574204 69574310 -81209243 - L2 LINE L2 -622 2691 2596 493 340 86 5 chr11 69574306 69574515 -81209038 + L2 LINE L2 2505 2730 -584 * 822 167 26 51 chr11 69574686 69574842 -81208711 - AluJ SINE Alu -155 157 6 3318 220 60 26 chr11 69574845 69574941 -81208612 + L1ME1 LINE L1 4314 4405 -1761 1960 89 6 95 chr11 69574941 69575097 -81208456 + AluSq SINE Alu 1 116 -197 2066 81 4 7 chr11 69575097 69575405 -81208148 + AluY SINE Alu 13 319 0 1960 89 6 95 chr11 69575405 69575574 -81207979 + AluSq SINE Alu 116 298 -15 3318 220 60 26 chr11 69575574 69575899 -81207654 + L1ME1 LINE L1 4405 4717 -1449 2012 118 0 62 chr11 69575899 69576222 -81207331 + AluSx SINE Alu 1 303 -9 3318 220 60 26 chr11 69576222 69576330 -81207223 + L1ME1 LINE L1 4717 4820 -1346 2315 74 0 0 chr11 69576330 69576627 -81206926 - AluY SINE Alu -13 298 2 3318 220 60 26 chr11 69576627 69576679 -81206874 + L1ME1 LINE L1 4820 4869 -1297 2313 97 0 3 chr11 69576679 69576989 -81206564 - AluSx SINE Alu -3 309 1 3318 220 60 26 chr11 69576989 69577728 -81205825 + L1ME1 LINE L1 4869 5677 -489 548 272 46 26 chr11 69577729 69577924 -81205629 + L1ME1 LINE L1 5948 6146 -20 321 327 25 31 chr11 69577999 69578158 -81205395 + L1ME LINE L1 5612 5769 -352 533 122 0 0 chr11 69578196 69578270 -81205283 - FLAM SINE Alu -14 129 56 1190 142 50 36 chr11 69578271 69578490 -81205063 + AluJo SINE Alu 86 307 -5 3679 169 49 23 chr11 69578490 69579217 -81204336 + L1MB7 LINE L1 5369 6119 -65 1759 171 3 0 chr11 69579217 69579510 -81204043 - AluJo SINE Alu -18 294 1 3679 169 49 23 chr11 69579510 69579562 -81203991 + L1MB7 LINE L1 6119 6168 -16 2036 123 7 7 chr11 69579608 69579918 -81203635 + AluSg SINE Alu 1 310 0 936 185 12 8 chr11 69580034 69580362 -81203191 - L1M4 LINE L1 -532 5642 5198 2093 109 3 0 chr11 69580362 69580673 -81202880 - AluSx SINE Alu 0 312 1 1717 165 13 23 chr11 69580673 69580982 -81202571 - AluJo SINE Alu -6 306 1 326 315 108 23 chr11 69580985 69581286 -81202267 + L2 LINE L2 1451 2865 -449 220 272 12 37 chr11 69581345 69581360 -81202193 + L2 LINE L2 1994 2008 -1306 1576 123 9 0 chr11 69581360 69581587 -81201966 - AluSx SINE Alu -83 229 1 220 272 12 37 chr11 69581587 69581652 -81201901 + L2 LINE L2 2008 2072 -1242 183 156 0 0 chr11 69582163 69582195 -81201358 + GA-rich Low_complexity Low_complexity 3 34 0 2210 118 3 0 chr11 69582287 69582593 -81200960 - AluSx SINE Alu -5 307 1 1837 170 0 20 chr11 69582624 69582924 -81200629 - AluJb SINE Alu -18 294 1 747 224 26 0 chr11 69582972 69583128 -81200425 + AluJb SINE Alu 137 296 -16 248 221 132 15 chr11 69584628 69584696 -81198857 + MIR SINE MIR 115 190 -72 1309 127 148 4 chr11 69584824 69584939 -81198614 + AluJo SINE Alu 18 115 -197 2193 72 3 26 chr11 69584939 69585245 -81198308 + AluSg SINE Alu 1 299 -11 1309 127 148 4 chr11 69585245 69585373 -81198180 + AluJo SINE Alu 115 296 -16 210 269 19 0 chr11 69585401 69585453 -81198100 + MER5A DNA MER1_type 136 188 -1 787 188 0 0 chr11 69585455 69585588 -81197965 + FLAM_C SINE Alu 1 133 0 546 174 124 8 chr11 69585671 69585792 -81197761 - AluJb SINE Alu -10 302 168 1108 183 78 81 chr11 69586019 69586221 -81197332 + MER58B DNA MER1_type 21 223 -2197 2327 92 0 3 chr11 69586221 69586524 -81197029 + AluSq SINE Alu 1 302 -11 1108 183 78 81 chr11 69586524 69586643 -81196910 + MER58B DNA MER1_type 223 341 0 870 126 0 0 chr11 69586799 69586918 -81196635 + AluSp SINE Alu 1 119 -194 1136 220 84 80 chr11 69586918 69586934 -81196619 + LTR37B LTR ERV1 4 18 -450 2478 67 3 3 chr11 69586934 69587247 -81196306 + AluSp SINE Alu 1 313 0 1136 220 84 80 chr11 69587247 69587527 -81196026 + LTR37B LTR ERV1 18 295 -173 2192 108 20 7 chr11 69587527 69587833 -81195720 - AluSx SINE Alu -2 310 1 1136 220 84 80 chr11 69587833 69587924 -81195629 + LTR37B LTR ERV1 295 397 -71 1579 139 38 69 chr11 69587924 69588241 -81195312 - AluJb SINE Alu -5 307 1 1136 220 84 80 chr11 69588241 69588314 -81195239 + LTR37B LTR ERV1 397 468 0 335 324 91 72 chr11 69588485 69588573 -81194980 + L1MC4 LINE L1 1978 2063 -6259 2274 94 0 10 chr11 69588573 69588745 -81194808 - AluSp SINE Alu -8 305 136 2276 98 3 0 chr11 69588745 69589050 -81194503 - AluSg SINE Alu -4 306 1 2274 94 0 10 chr11 69589050 69589185 -81194368 - AluSp SINE Alu -177 136 1 335 324 91 72 chr11 69589185 69589237 -81194316 + L1MC4 LINE L1 2063 2113 -6209 1912 147 0 3 chr11 69589237 69589530 -81194023 + AluSx SINE Alu 6 297 -15 335 324 91 72 chr11 69589530 69589572 -81193981 + L1MC4 LINE L1 2113 6984 -1338 1472 164 49 49 chr11 69589952 69590146 -81193407 - AluJo SINE Alu -7 305 109 2221 86 17 0 chr11 69590146 69590438 -81193115 + AluSp SINE Alu 1 297 -16 1472 164 49 49 chr11 69590438 69590548 -81193005 - AluJo SINE Alu -202 110 1 191 330 50 42 chr11 69590616 69590770 -81192783 + MIR SINE MIR 25 176 -63 248 323 21 0 chr11 69591030 69591123 -81192430 + MIR SINE MIR 49 143 -65 211 312 0 65 chr11 69592642 69592735 -81190818 + MIR SINE MIR 110 196 -66 225 340 31 10 chr11 69592782 69592879 -81190674 - MIR3 SINE MIR 0 208 110 244 103 0 0 chr11 69593598 69593637 -81189916 + tRNA-Cys-TGC tRNA tRNA 6 44 -31 250 404 9 0 chr11 69595052 69595161 -81188392 - MIR SINE MIR -62 146 37 615 242 0 0 chr11 69595479 69595603 -81187950 - L2 LINE L2 -1 3312 3189 24 0 0 0 chr11 69596454 69596478 -81187075 + GC_rich Low_complexity Low_complexity 1 24 0 370 356 98 23 chr11 69597549 69597722 -81185831 - L2 LINE L2 -108 3164 3005 2287 108 3 0 chr11 69597722 69598029 -81185524 + AluSx SINE Alu 1 308 -4 370 356 98 23 chr11 69598029 69598351 -81185202 - L2 LINE L2 -267 3005 2631 224 267 149 77 chr11 69598429 69598528 -81185025 + L2 LINE L2 3019 3109 -204 1521 140 85 52 chr11 69598528 69598800 -81184753 - AluJb SINE Alu -31 281 1 224 267 149 77 chr11 69598800 69598895 -81184658 + L2 LINE L2 3109 3227 -86 2228 98 0 10 chr11 69599044 69599341 -81184212 - AluSx SINE Alu -18 294 1 924 295 182 0 chr11 69599342 69599759 -81183794 + L2 LINE L2 2820 3312 -1 217 295 39 0 chr11 69599761 69599839 -81183714 - L2 LINE L2 -610 2704 2624 1056 159 9 48 chr11 69599844 69600071 -81183482 + AluJo SINE Alu 81 298 -14 2559 34 0 0 chr11 69600294 69600592 -81182961 + AluY SINE Alu 1 298 -13 2214 95 3 0 chr11 69603181 69603476 -81180077 - AluSx SINE Alu -16 296 1 187 250 221 15 chr11 69603724 69603792 -81179761 - MER5B DNA MER1_type -35 143 62 1766 167 10 10 chr11 69604067 69604373 -81179180 + AluJb SINE Alu 1 306 -6 210 337 142 21 chr11 69604569 69604759 -81178794 + L2 LINE L2 2084 2296 -1018 2144 127 0 0 chr11 69605066 69605366 -81178187 - AluSq SINE Alu -12 301 2 2343 82 3 3 chr11 69605399 69605702 -81177851 - AluSp SINE Alu -10 303 1 1084 162 0 0 chr11 69605716 69605889 -81177664 - AluJb SINE Alu -3 309 137 783 159 40 35 chr11 69605907 69606108 -81177445 + L1MB4 LINE L1 5627 5828 -352 1929 102 0 0 chr11 69606109 69606365 -81177188 + AluSq SINE Alu 1 256 -57 358 214 48 10 chr11 69606712 69606815 -81176738 + LTR67 LTR ERVL 448 554 -3 776 213 91 54 chr11 69607065 69607237 -81176316 + MIR SINE MIR 20 203 -59 2362 81 3 3 chr11 69607237 69607546 -81176007 + AluSq SINE Alu 1 309 -4 776 213 91 54 chr11 69607546 69607594 -81175959 + MIR SINE MIR 203 248 -14 180 316 0 38 chr11 69608447 69608526 -81175027 + L2 LINE L2 3234 3309 -4 258 191 22 90 chr11 69608798 69608887 -81174666 - MER53 DNA DNA 0 189 107 865 100 8 1 chr11 69608889 69609140 -81174413 + AluSg SINE Alu 21 307 -5 276 246 0 0 chr11 69609152 69609217 -81174336 - MER53 DNA DNA -43 146 82 525 180 246 12 chr11 69609226 69609240 -81174313 + MER46A DNA MER2_type 31 40 -2691 2505 62 0 3 chr11 69609240 69609547 -81174006 + AluY SINE Alu 1 306 -5 525 180 246 12 chr11 69609547 69609699 -81173854 + MER46A DNA MER2_type 40 236 0 1880 140 7 23 chr11 69609700 69610007 -81173546 + AluJb SINE Alu 3 304 -8 321 169 0 0 chr11 69610007 69610066 -81173487 + MER53 DNA DNA 131 189 0 1918 151 13 0 chr11 69611221 69611520 -81172033 - AluJo SINE Alu -9 303 1 923 174 51 0 chr11 69611549 69611727 -81171826 - MER53 DNA DNA 0 189 3 207 0 0 0 chr11 69612463 69612486 -81171067 + (GA)n Simple_repeat Simple_repeat 1 23 0 213 240 20 0 chr11 69614535 69614585 -81168968 + MIR SINE MIR 70 120 -88 287 167 0 0 chr11 69614802 69614862 -81168691 - LTR37B LTR ERV1 -166 302 243 1998 138 0 0 chr11 69614887 69615178 -81168375 + AluSx SINE Alu 1 291 -21 30 0 0 0 chr11 69615178 69615208 -81168345 + AT_rich Low_complexity Low_complexity 1 30 0 807 154 0 54 chr11 69615588 69615737 -81167816 - FLAM_C SINE Alu 0 143 3 2294 90 0 0 chr11 69616041 69616341 -81167212 - AluY SINE Alu -11 300 1 220 307 100 50 chr11 69616879 69617019 -81166534 + MIR SINE MIR 48 194 -68 644 320 91 0 chr11 69617468 69617687 -81165866 - L2 LINE L2 -5 3308 3070 858 171 0 0 chr11 69617687 69617827 -81165726 - FLAM_C SINE Alu -3 140 1 974 265 86 2 chr11 69617828 69618257 -81165296 - L2 LINE L2 -235 3078 2616 2367 72 10 3 chr11 69618257 69618561 -81164992 + AluSp SINE Alu 1 306 -7 197 274 83 12 chr11 69618562 69618646 -81164907 - L2 LINE L2 -1017 2297 2208 2348 65 10 3 chr11 69618671 69618980 -81164573 - AluY SINE Alu 0 311 1 1155 217 0 8 chr11 69618996 69619240 -81164313 - MLT1F LTR MaLR -28 514 273 5026 103 28 11 chr11 69619348 69620129 -81163424 - SVA Other Other -520 866 72 747 31 0 54 chr11 69620129 69620258 -81163295 + (GGGAGA)n Simple_repeat Simple_repeat 3 124 0 21 0 0 0 chr11 69620273 69620294 -81163259 + AT_rich Low_complexity Low_complexity 1 21 0 2086 114 0 3 chr11 69620294 69620607 -81162946 + AluSx SINE Alu 1 312 0 2260 92 0 0 chr11 69620610 69620904 -81162649 + AluY SINE Alu 1 294 -17 246 306 58 16 chr11 69621141 69621262 -81162291 + L2 LINE L2 2941 3066 -206 1783 177 0 3 chr11 69621275 69621580 -81161973 + AluJo SINE Alu 1 304 -8 970 113 0 8 chr11 69621653 69621786 -81161767 + FLAM_C SINE Alu 1 132 -1 2365 80 0 10 chr11 69621793 69622104 -81161449 + AluSq SINE Alu 1 308 -5 1324 84 11 0 chr11 69622221 69622399 -81161154 + AluSg/x SINE Alu 111 290 -20 284 326 181 16 chr11 69623065 69623258 -81160295 + L2 LINE L2 3015 3239 -74 1106 100 10 5 chr11 69623365 69623565 -81159988 + L1P LINE L1 3776 3976 -2170 5152 135 7 1 chr11 69623584 69624426 -81159127 + L1P3 LINE L1 10 856 -5605 254 292 195 41 chr11 69624812 69625007 -81158546 + L2 LINE L2 3015 3239 -74 201 39 0 0 chr11 69625014 69625040 -81158513 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 2157 116 0 0 chr11 69626269 69626563 -81156990 - AluSx SINE Alu -18 294 1 512 305 68 5 chr11 69626566 69626756 -81156797 + MER102a DNA MER1_type 126 327 -3 289 336 100 7 chr11 69627018 69627158 -81156395 - MIR3 SINE MIR -11 197 45 949 106 0 0 chr11 69628719 69628851 -81154702 - AluY SINE Alu -179 132 1 233 322 152 29 chr11 69628973 69629182 -81154371 - L2 LINE L2 -3 3310 3128 2137 126 0 0 chr11 69629182 69629492 -81154061 - AluSx SINE Alu -2 310 1 233 322 152 29 chr11 69629492 69629805 -81153748 - L2 LINE L2 -185 3128 2583 1726 134 30 34 chr11 69629848 69630146 -81153407 + AluSx SINE Alu 1 297 -15 851 164 15 104 chr11 69630150 69630351 -81153202 + AluJb SINE Alu 121 303 -9 399 336 60 0 chr11 69630432 69630700 -81152853 + LTR33 LTR ERVL 1 284 -237 483 289 191 48 chr11 69630906 69631431 -81152122 + L2 LINE L2 1940 2539 -775 26 50 0 0 chr11 69631917 69631957 -81151596 + AT_rich Low_complexity Low_complexity 1 40 0 180 289 0 0 chr11 69631989 69632034 -81151519 - MIR SINE MIR -115 147 103 994 65 8 8 chr11 69633283 69633407 -81150146 - AluSq/x SINE Alu -189 124 1 521 122 0 0 chr11 69633436 69633510 -81150043 + AluJ/FRAM SINE Alu 225 298 -14 673 262 92 31 chr11 69633515 69633638 -81149915 + L1P LINE L1 3752 3866 -2280 2379 57 14 0 chr11 69633638 69633948 -81149605 + AluSp SINE Alu 1 314 0 673 262 92 31 chr11 69633948 69634292 -81149261 + L1P LINE L1 3866 4258 -1888 1904 156 0 3 chr11 69634292 69634580 -81148973 + AluJo SINE Alu 11 297 -15 673 262 92 31 chr11 69634580 69634618 -81148935 + L1P LINE L1 4258 4292 -1854 334 211 68 135 chr11 69634623 69634692 -81148861 + L1M4 LINE L1 4255 4327 -1819 2073 111 47 3 chr11 69634692 69634990 -81148563 - AluSq SINE Alu 0 313 3 1933 144 0 30 chr11 69634992 69635297 -81148256 - AluJb SINE Alu -16 296 1 334 211 68 135 chr11 69635297 69635357 -81148196 + L1M4 LINE L1 4328 4378 -1768 1203 112 0 0 chr11 69635362 69635523 -81148030 + AluSq SINE Alu 152 312 -1 1709 214 63 41 chr11 69635541 69636126 -81147427 + L1M4 LINE L1 4399 4996 -1150 2136 112 0 14 chr11 69636128 69636424 -81147129 + AluSx SINE Alu 3 294 -18 1940 105 51 44 chr11 69636427 69636721 -81146832 + AluSq SINE Alu 1 296 -17 1191 243 117 0 chr11 69636737 69637054 -81146499 + MER66A LTR ERV1 85 438 -40 3008 179 26 50 chr11 69637063 69637312 -81146241 - L1 LINE L1 -1482 4664 4410 2409 74 0 0 chr11 69637312 69637650 -81145903 - AluSq SINE Alu 0 338 1 3008 179 26 50 chr11 69637650 69637850 -81145703 - L1 LINE L1 -1736 4410 4207 760 253 0 0 chr11 69637850 69638004 -81145549 + FRAM SINE Alu 2 155 -11 3008 179 26 50 chr11 69638004 69638325 -81145228 - L1 LINE L1 -1939 4207 3911 4572 139 29 35 chr11 69638327 69638386 -81145167 + L1MA8 LINE L1 4433 4491 -1800 2226 130 0 0 chr11 69638386 69638687 -81144866 + AluSg SINE Alu 1 301 -9 4572 139 29 35 chr11 69638687 69639658 -81143895 + L1MA8 LINE L1 4491 5466 -825 2098 135 0 25 chr11 69639658 69639976 -81143577 + AluSx SINE Alu 1 310 -2 4572 139 29 35 chr11 69639976 69640353 -81143200 + L1MA8 LINE L1 5466 5828 -463 2230 122 10 0 chr11 69640353 69640657 -81142896 + AluSx SINE Alu 1 307 -5 4572 139 29 35 chr11 69640657 69640782 -81142771 + L1MA8 LINE L1 5828 5952 -339 1580 157 27 55 chr11 69640782 69640840 -81142713 + AluJo SINE Alu 1 59 -253 2481 96 0 0 chr11 69640840 69641143 -81142410 - AluSc SINE Alu -6 303 1 1580 157 27 55 chr11 69641143 69641377 -81142176 + AluJo SINE Alu 59 285 -27 1838 155 33 36 chr11 69641400 69641902 -81141651 + MLT2A2 LTR ERVL 36 546 -8 407 100 0 88 chr11 69641906 69641986 -81141567 - L1MA7 LINE L1 -245 6046 5974 699 158 98 0 chr11 69641986 69642119 -81141434 - MER66A-int LTR ERV1 -133 6543 6398 * 1379 186 49 30 chr11 69642117 69642494 -81141059 - MER66A-int LTR ERV1 -1585 6171 4607 373 236 36 45 chr11 69642526 69642636 -81140917 - MER4D LTR ERV1 -712 160 52 10133 180 118 114 chr11 69642636 69644434 -81139119 - MER66A-int LTR ERV1 -2224 4452 2664 1232 177 5 14 chr11 69644434 69644649 -81138904 - AluJb SINE Alu -15 297 85 10133 180 118 114 chr11 69644649 69645750 -81137803 - MER66A-int LTR ERV1 -4012 2664 1569 2404 105 0 3 chr11 69645750 69646063 -81137490 - AluSq SINE Alu -1 312 1 10133 180 118 114 chr11 69646063 69646605 -81136948 - MER66A-int LTR ERV1 -5107 1569 1031 2047 148 3 19 chr11 69646605 69646922 -81136631 + AluJb SINE Alu 1 312 0 10133 180 118 114 chr11 69646922 69647560 -81135993 - MER66A-int LTR ERV1 -5645 1031 2 1119 209 59 126 chr11 69647725 69647911 -81135642 - MER66A LTR ERV1 0 478 281 2063 121 4 0 chr11 69647911 69648216 -81135337 + AluSx SINE Alu 1 306 0 2186 129 10 0 chr11 69648219 69648521 -81135032 + AluSg SINE Alu 2 306 -4 1119 209 59 126 chr11 69648521 69648829 -81134724 - MER66A LTR ERV1 -199 279 97 664 241 6 6 chr11 69648895 69649057 -81134496 - MER74B LTR ERVL -250 372 211 233 192 19 0 chr11 69649092 69649144 -81134409 - MER74B LTR ERVL -569 53 1 351 307 18 0 chr11 69649152 69649266 -81134287 + ERVL LTR ERVL 4724 4839 -925 1034 216 18 0 chr11 69649269 69649487 -81134066 - MLT1A1 LTR MaLR 0 365 144 264 269 72 66 chr11 69650859 69651026 -81132527 - L2 LINE L2 -215 3057 2890 2294 92 3 3 chr11 69651500 69651795 -81131758 + AluSc SINE Alu 1 295 -14 328 180 45 56 chr11 69652088 69652177 -81131376 - MIR SINE MIR -61 147 60 638 259 41 0 chr11 69652233 69652380 -81131173 + MIR SINE MIR 110 262 0 2121 87 47 0 chr11 69653530 69653806 -81129747 + AluSx SINE Alu 1 289 -23 209 254 127 0 chr11 69654726 69654789 -81128764 - MIR SINE MIR -56 152 82 2170 121 17 0 chr11 69655165 69655462 -81128091 + AluSx SINE Alu 4 305 -7 1770 101 12 19 chr11 69655508 69655765 -81127788 + AluSq SINE Alu 3 257 -56 5052 20 37 0 chr11 69656151 69656691 -81126862 + SVA Other Other 819 1378 -8 781 161 0 0 chr11 69656691 69656809 -81126744 - FLAM_C SINE Alu -15 118 1 1842 157 35 15 chr11 69656809 69657152 -81126401 - L1PA16 LINE L1 0 6166 5817 224 200 296 24 chr11 69657538 69657663 -81125890 - MIR SINE MIR -9 253 95 289 340 43 0 chr11 69657693 69657787 -81125766 - MIR SINE MIR -148 114 17 2409 94 3 0 chr11 69657809 69658107 -81125446 + AluSx SINE Alu 5 303 -9 1531 193 0 22 chr11 69658116 69658391 -81125162 + AluJb SINE Alu 1 269 -43 2024 104 0 45 chr11 69658399 69658687 -81124866 + AluSg SINE Alu 1 275 -35 270 316 11 46 chr11 69659824 69659998 -81123555 + Charlie8 DNA MER1_type 1 168 -2249 2518 71 0 7 chr11 69659998 69660308 -81123245 + AluSg SINE Alu 1 308 -2 675 134 0 0 chr11 69660784 69660881 -81122672 + FRAM SINE Alu 59 155 -21 4680 119 23 8 chr11 69661465 69662194 -81121359 - MER66-int LTR ERV1 -1329 5347 4608 2469 75 0 0 chr11 69662197 69662505 -81121048 + AluY SINE Alu 1 308 -3 1276 69 5 69 chr11 69662507 69662696 -81120857 + AluSg/x SINE Alu 134 310 0 2299 185 73 96 chr11 69662703 69663164 -81120389 + L1MC5 LINE L1 6625 7095 -866 2380 86 0 3 chr11 69663164 69663455 -81120098 - AluSx SINE Alu -22 290 1 2299 185 73 96 chr11 69663455 69663587 -81119966 + L1MC5 LINE L1 7095 7228 -733 1956 125 0 27 chr11 69663587 69663882 -81119671 + AluSx SINE Alu 1 287 -25 183 80 0 0 chr11 69663884 69663909 -81119644 + (TG)n Simple_repeat Simple_repeat 2 26 0 2299 185 73 96 chr11 69663909 69664149 -81119404 + L1MC5 LINE L1 7229 7443 -518 230 318 36 36 chr11 69664224 69664419 -81119134 + L1M4 LINE L1 4003 4197 -1949 1345 187 18 0 chr11 69664589 69664808 -81118745 + MER58A DNA MER1_type 2 224 0 1528 189 10 52 chr11 69664865 69665172 -81118381 - AluJo SINE Alu -18 294 1 2160 199 71 2 chr11 69665356 69665834 -81117719 - MER90 LTR ERV1 -6 608 98 1742 164 27 7 chr11 69666053 69666352 -81117201 + AluJb SINE Alu 3 307 -5 2216 109 0 0 chr11 69666563 69666857 -81116696 + AluSq SINE Alu 1 294 -19 1468 140 18 68 chr11 69666884 69667162 -81116391 - AluJb SINE Alu -26 286 23 912 203 6 16 chr11 69667172 69667354 -81116199 + AluJb SINE Alu 120 299 -13 467 162 17 51 chr11 69667362 69667479 -81116074 + L1ME3 LINE L1 6050 6162 0 2165 125 7 0 chr11 69667488 69667783 -81115770 + AluSx SINE Alu 1 297 -15 1893 117 11 4 chr11 69668179 69668444 -81115109 + AluJo SINE Alu 29 295 -17 476 230 63 64 chr11 69668672 69668723 -81114830 + MIR SINE MIR 3 53 -209 2272 102 10 3 chr11 69668723 69669026 -81114527 + AluSx SINE Alu 2 306 -6 476 230 63 64 chr11 69669026 69669194 -81114359 + MIR SINE MIR 53 224 -38 218 282 14 14 chr11 69672115 69672186 -81111367 + L2 LINE L2 2986 3056 -216 502 313 198 14 chr11 69672511 69673093 -81110460 + L2 LINE L2 1327 2015 -1299 1302 273 62 48 chr11 69673093 69673369 -81110184 - L1MEd LINE L1 -1181 4948 4677 2194 114 27 0 chr11 69673369 69673667 -81109886 - AluSx SINE Alu -3 309 4 1302 273 62 48 chr11 69673667 69674101 -81109452 - L1MEd LINE L1 -1452 4677 4223 1872 100 12 0 chr11 69674101 69674341 -81109212 - AluSx SINE Alu -69 243 1 1302 273 62 48 chr11 69674341 69674456 -81109097 - L1MEd LINE L1 -1906 4223 4111 312 260 62 49 chr11 69674526 69674686 -81108867 - L1M4 LINE L1 -2070 4076 3860 1364 181 0 4 chr11 69674686 69674912 -81108641 + AluJb SINE Alu 70 294 -18 251 254 0 0 chr11 69674912 69674971 -81108582 - L1M4 LINE L1 -2283 3863 3805 769 262 53 105 chr11 69674977 69675287 -81108266 - L1M4 LINE L1 -2424 3722 3397 1550 133 119 25 chr11 69675287 69675572 -81107981 - AluJo SINE Alu 0 312 1 769 262 53 105 chr11 69675572 69675650 -81107903 - L1M4 LINE L1 -2749 3397 3316 2226 65 41 37 chr11 69675650 69675944 -81107609 - AluY SINE Alu -16 295 1 769 262 53 105 chr11 69675944 69676097 -81107456 - L1M4 LINE L1 -2830 3316 3157 1981 73 0 0 chr11 69676097 69676331 -81107222 + AluY SINE Alu 69 302 -9 769 262 53 105 chr11 69676331 69676381 -81107172 - L1M4 LINE L1 -2989 3157 3106 812 169 11 90 chr11 69676381 69676558 -81106995 - FRAM SINE Alu -2 164 2 769 262 53 105 chr11 69676558 69676630 -81106923 - L1M4 LINE L1 -3040 3106 3032 2035 115 30 23 chr11 69676630 69676934 -81106619 - AluSx SINE Alu -6 306 1 769 262 53 105 chr11 69676934 69677084 -81106469 - L1M4 LINE L1 -3114 3032 2948 873 219 71 18 chr11 69677097 69677246 -81106307 - L1MB7 LINE L1 -21 6163 6015 2369 162 46 6 chr11 69677246 69677760 -81105793 - L1MB7 LINE L1 -294 5890 5428 2145 108 0 55 chr11 69677766 69678091 -81105462 - AluSg SINE Alu -3 307 1 2565 251 84 35 chr11 69678099 69679018 -81104535 - L1MEd LINE L1 -2188 3941 2946 1463 116 32 8 chr11 69679018 69679269 -81104284 - L1MA4 LINE L1 -5 6295 6039 2565 251 84 35 chr11 69679269 69679564 -81103989 - L1MEd LINE L1 -3183 2946 2667 876 268 22 17 chr11 69679578 69679809 -81103744 - MIR SINE MIR -28 234 3 410 283 25 88 chr11 69679858 69680286 -81103267 - L1MEd LINE L1 -3556 2573 2178 2165 106 3 3 chr11 69680286 69680579 -81102974 + AluSq SINE Alu 18 310 -3 410 283 25 88 chr11 69680579 69680637 -81102916 - L1MEd LINE L1 -3951 2178 2118 1947 133 7 20 chr11 69680806 69681108 -81102445 - AluJo SINE Alu -14 298 1 550 211 0 0 chr11 69681399 69681494 -81102059 - FRAM/FAM SINE Alu -89 87 1 2103 125 0 0 chr11 69681517 69681797 -81101756 - AluSx SINE Alu -32 280 1 830 282 106 16 chr11 69681818 69682601 -81100952 - L1MEd LINE L1 -4550 1620 714 1590 186 61 0 chr11 69682710 69682990 -81100563 - AluJb SINE Alu -2 310 14 2171 108 0 3 chr11 69683008 69683305 -81100248 - AluSg1 SINE Alu -13 296 1 1429 177 49 24 chr11 69683308 69683596 -81099957 - AluJo SINE Alu -17 295 1 * 2426 80 0 0 chr11 69683595 69683906 -81099647 - AluY SINE Alu 0 311 1 833 162 0 7 chr11 69683906 69684048 -81099505 - AluJo SINE Alu -169 143 3 2601 32 0 3 chr11 69684170 69684480 -81099073 - AluY SINE Alu -2 309 1 2177 107 0 7 chr11 69684480 69684787 -81098766 - AluSx SINE Alu -7 305 1 325 111 14 42 chr11 69684966 69685038 -81098515 - L1MB8 LINE L1 0 6178 6109 2019 117 0 0 chr11 69685085 69685405 -81098148 - AluSx SINE Alu 0 320 1 1932 197 56 0 chr11 69685408 69685854 -81097699 - L1MB7 LINE L1 -18 6166 5696 1146 124 6 0 chr11 69685854 69686023 -81097530 - AluSg/x SINE Alu -13 299 130 2116 108 0 3 chr11 69686028 69686323 -81097230 - AluSx SINE Alu -18 294 1 1001 184 21 0 chr11 69686329 69686519 -81097034 - L1MB7 LINE L1 -484 5694 5501 213 94 0 0 chr11 69686523 69686555 -81096998 + (TTA)n Simple_repeat Simple_repeat 2 33 0 224 316 95 6 chr11 69686672 69686830 -81096723 + L2 LINE L2 2559 2730 -584 245 145 97 32 chr11 69687194 69687256 -81096297 + L2 LINE L2 3207 3272 0 197 277 15 15 chr11 69688555 69688620 -81094933 - MIR SINE MIR -115 93 29 225 267 67 0 chr11 69688721 69688796 -81094757 + MIR SINE MIR 79 158 -104 320 235 153 0 chr11 69688901 69688999 -81094554 - MIR SINE MIR -79 183 71 430 299 58 0 chr11 69689683 69689837 -81093716 - MIR SINE MIR -19 243 81 2273 97 7 0 chr11 69689857 69690157 -81093396 - AluSx SINE Alu -10 302 1 2019 87 0 4 chr11 69690307 69690592 -81092961 + AluSx SINE Alu 20 303 0 181 111 0 0 chr11 69690592 69690619 -81092934 - MIR SINE MIR -85 123 97 1904 130 7 7 chr11 69691154 69691446 -81092107 + AluJb SINE Alu 1 292 -20 2226 113 0 0 chr11 69695661 69695972 -81087581 - AluSq SINE Alu -2 311 1 622 206 0 0 chr11 69697431 69697538 -81086015 - FLAM_A SINE Alu -16 126 20 248 339 78 44 chr11 69697549 69697706 -81085847 - L1MC4a LINE L1 -1878 5930 5765 1565 122 16 96 chr11 69697706 69698018 -81085535 - AluJo SINE Alu -20 292 6 248 339 78 44 chr11 69698018 69698040 -81085513 - L1MC4a LINE L1 -2043 5765 5745 281 244 13 26 chr11 69698081 69698159 -81085394 + CT-rich Low_complexity Low_complexity 3 79 0 237 132 0 0 chr11 69698379 69698417 -81085136 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 1068 171 0 6 chr11 69698422 69699356 -81084197 + (TGAG)n Simple_repeat Simple_repeat 1 1107 -27 1188 111 0 0 chr11 69699356 69699536 -81084017 + (TGGG)n Simple_repeat Simple_repeat 1 180 0 1068 171 0 6 chr11 69699536 69699564 -81083989 + (TGAG)n Simple_repeat Simple_repeat 1107 1134 0 217 204 0 0 chr11 69700589 69700633 -81082920 + MIR3 SINE MIR 113 156 -52 181 299 134 0 chr11 69700656 69700723 -81082830 - L2 LINE L2 -11 3261 3186 204 297 0 16 chr11 69700726 69700790 -81082763 + MIR3 SINE MIR 143 205 -3 261 151 0 0 chr11 69701269 69701322 -81082231 + (CA)n Simple_repeat Simple_repeat 2 54 0 1148 237 116 45 chr11 69701588 69701776 -81081777 - L2 LINE L2 -23 3290 3117 2136 100 13 3 chr11 69701776 69702077 -81081476 + AluSx SINE Alu 1 304 -8 1148 237 116 45 chr11 69702077 69702646 -81080907 - L2 LINE L2 -196 3117 2492 385 178 122 19 chr11 69702674 69702781 -81080772 - L1MC4a LINE L1 -1980 5828 5711 326 283 39 80 chr11 69702816 69702901 -81080652 - L1MC4a LINE L1 -814 5332 5245 2040 117 3 19 chr11 69702901 69703217 -81080336 - AluSx SINE Alu -1 311 1 326 283 39 80 chr11 69703217 69703520 -81080033 - L1MC4a LINE L1 -901 5245 4960 197 250 83 52 chr11 69704135 69704231 -81079322 - MIR SINE MIR -125 137 39 2036 105 3 51 chr11 69704235 69704549 -81079004 + AluSx SINE Alu 6 304 -8 2218 82 6 25 chr11 69704587 69704905 -81078648 - AluSx SINE Alu 0 312 1 278 342 76 32 chr11 69705416 69705574 -81077979 + MIR SINE MIR 72 236 -26 352 253 133 33 chr11 69705647 69705830 -81077723 - MIR SINE MIR -3 259 37 2460 60 7 0 chr11 69706735 69707037 -81076516 + AluY SINE Alu 1 304 -7 318 50 0 0 chr11 69707287 69707339 -81076214 + (TCCCC)n Simple_repeat Simple_repeat 1 92 0 318 50 0 0 chr11 69707339 69707379 -81076174 + (TCCCC)n Simple_repeat Simple_repeat 5 44 0 1259 112 0 0 chr11 69707387 69707557 -81075996 - AluSc SINE Alu -33 276 107 202 179 30 119 chr11 69707678 69707723 -81075830 + MIR SINE MIR 158 197 -65 1551 165 70 14 chr11 69707723 69708008 -81075545 + AluJo SINE Alu 1 301 -1 202 179 30 119 chr11 69708008 69708029 -81075524 + MIR SINE MIR 197 218 -44 1478 174 20 20 chr11 69708818 69709117 -81074436 - AluJo SINE Alu -3 309 11 994 171 71 5 chr11 69709197 69709407 -81074146 + MIR SINE MIR 2 225 -37 198 118 0 0 chr11 69709546 69709580 -81073973 + (CA)n Simple_repeat Simple_repeat 2 35 0 2139 107 3 7 chr11 69709606 69709906 -81073647 + AluSx SINE Alu 1 299 -13 210 118 0 0 chr11 69710027 69710061 -81073492 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 285 358 55 12 chr11 69710074 69710239 -81073314 - L3 LINE CR1 -4 1573 1402 2018 205 126 25 chr11 69710355 69710917 -81072636 - MLT1E3 LTR MaLR -5 619 1 2064 144 0 0 chr11 69710934 69711246 -81072307 - AluSx SINE Alu 0 312 1 1165 213 126 14 chr11 69711253 69711601 -81071952 - L1ME3A LINE L1 -6 6164 5778 343 169 0 0 chr11 69711639 69711698 -81071855 + L1MD3 LINE L1 7937 7995 0 2454 169 65 0 chr11 69711822 69712266 -81071287 + MLT1D LTR MaLR 33 505 0 1896 80 76 11 chr11 69712279 69712555 -81070998 - AluY SINE Alu -17 294 1 434 219 21 0 chr11 69712555 69712651 -81070902 - L1ME3A LINE L1 -401 5769 5672 912 82 7 14 chr11 69712667 69712813 -81070740 + (TTCC)n Simple_repeat Simple_repeat 3 147 0 827 168 0 0 chr11 69712816 69712935 -81070618 - FLAM_C SINE Alu -23 120 2 1236 267 22 11 chr11 69712943 69713310 -81070243 - L1ME3A LINE L1 -508 5662 5292 2055 118 3 0 chr11 69713336 69713623 -81069930 + AluSq SINE Alu 1 288 -25 355 257 54 24 chr11 69713624 69713817 -81069736 - L1MC4 LINE L1 -1339 6983 1912 2395 158 90 47 chr11 69713822 69714184 -81069369 - L1MD3 LINE L1 0 7995 7650 1894 120 4 0 chr11 69714184 69714451 -81069102 - AluSx SINE Alu -44 268 1 2395 158 90 47 chr11 69714451 69714541 -81069012 - L1MD3 LINE L1 -345 7650 7565 198 0 0 0 chr11 69714541 69714563 -81068990 + (CATAT)n Simple_repeat Simple_repeat 4 25 0 2395 158 90 47 chr11 69714563 69714685 -81068868 - L1MD3 LINE L1 -430 7565 7395 875 145 0 0 chr11 69714739 69714870 -81068683 - AluJb SINE Alu -171 141 11 386 187 107 0 chr11 69714885 69714960 -81068593 - MLT1F1 LTR MaLR -442 125 43 2061 87 42 7 chr11 69714964 69715278 -81068275 - AluSg1 SINE Alu 0 309 1 762 140 111 133 chr11 69715291 69715570 -81067983 - L1MD3 LINE L1 -877 7118 6846 2219 89 20 7 chr11 69716178 69716481 -81067072 + AluSx SINE Alu 1 307 -5 438 313 37 0 chr11 69716740 69716903 -81066650 + MER5B DNA MER1_type 1 169 -9 311 180 49 0 chr11 69716957 69717018 -81066535 + MIR SINE MIR 86 149 -113 401 288 1 29 chr11 69717094 69717207 -81066346 + L1MC4 LINE L1 1969 6983 -1339 1952 118 35 0 chr11 69717277 69717566 -81065987 - AluSx SINE Alu -13 299 1 483 145 0 0 chr11 69717596 69717679 -81065874 + (TCCC)n Simple_repeat Simple_repeat 2 84 0 2014 147 0 10 chr11 69717692 69718006 -81065547 - AluJb SINE Alu -1 311 1 559 305 6 12 chr11 69718031 69718195 -81065358 - MER5B DNA MER1_type -5 173 11 2141 99 7 0 chr11 69718316 69718625 -81064928 + AluSx SINE Alu 1 311 0 563 245 53 7 chr11 69718681 69718832 -81064721 - MIR SINE MIR -81 181 24 2323 90 0 0 chr11 69720440 69720750 -81062803 - AluSg SINE Alu 0 310 1 327 340 31 19 chr11 69720750 69720912 -81062641 + L2 LINE L2 2507 2670 -644 1040 96 7 0 chr11 69721000 69721136 -81062417 + AluSx SINE Alu 1 137 -175 280 306 0 0 chr11 69721146 69721218 -81062335 + MLT1J LTR MaLR 239 310 -201 246 62 0 0 chr11 69721239 69721271 -81062282 + (TCTCCC)n Simple_repeat Simple_repeat 5 36 0 8489 29 6 260 chr11 69721272 69723127 -81060426 + SVA Other Other 3 1386 0 377 234 153 8 chr11 69723140 69723264 -81060289 + MLT1J LTR MaLR 311 452 -59 1254 80 6 0 chr11 69723271 69723433 -81060120 + AluSx SINE Alu 121 283 -29 2330 81 7 7 chr11 69723627 69723935 -81059618 + AluSg SINE Alu 3 310 0 833 128 0 71 chr11 69724054 69724195 -81059358 + FLAM_C SINE Alu 2 132 -11 2452 126 83 8 chr11 69725172 69725570 -81057983 - MSTA LTR MaLR 0 428 1 254 287 110 37 chr11 69725753 69725889 -81057664 + L2 LINE L2 3166 3311 -2 676 237 14 0 chr11 69725993 69726132 -81057421 - AluJo SINE Alu -149 163 23 201 200 22 0 chr11 69726926 69726971 -81056582 + L2 LINE L2 3225 3270 -2 2163 114 0 0 chr11 69726972 69727270 -81056283 - AluSx SINE Alu -14 298 1 1632 174 37 7 chr11 69727281 69727575 -81055978 - AluJb SINE Alu -9 303 1 2171 102 0 10 chr11 69727657 69727960 -81055593 + AluSc SINE Alu 1 300 -9 2385 87 3 0 chr11 69728129 69728441 -81055112 - AluSp SINE Alu 0 313 1 1590 153 51 4 chr11 69728782 69729057 -81054496 + AluJo SINE Alu 6 293 -19 606 51 0 0 chr11 69729057 69729135 -81054418 + (TA)n Simple_repeat Simple_repeat 2 79 0 2144 116 0 0 chr11 69729905 69730207 -81053346 + AluSx SINE Alu 1 302 -10 281 44 67 0 chr11 69730226 69730271 -81053282 + A-rich Low_complexity Low_complexity 2 49 0 1594 152 62 4 chr11 69730586 69730862 -81052691 + AluJb SINE Alu 2 293 -19 2099 111 0 3 chr11 69730864 69731195 -81052358 + AluSx SINE Alu 1 312 0 276 337 0 0 chr11 69731355 69731441 -81052112 + MER89-int LTR ERV1 6293 6378 -423 2154 91 0 3 chr11 69731578 69731924 -81051629 + AluSx SINE Alu 1 345 0 1068 202 119 32 chr11 69731931 69732208 -81051345 + AluJo SINE Alu 1 301 -11 2066 130 0 0 chr11 69732236 69732528 -81051025 + AluSx SINE Alu 2 293 -19 513 152 25 0 chr11 69732546 69732625 -81050928 + AluJb SINE Alu 144 224 -88 2187 129 0 0 chr11 69732698 69733073 -81050480 + AluSx SINE Alu 1 375 0 2252 207 36 16 chr11 69733096 69733599 -81049954 + REP3 LTR ERV 50 562 0 332 230 23 94 chr11 69733819 69733963 -81049590 + L1MC4 LINE L1 1912 6982 -1340 * 350 145 0 72 chr11 69733920 69733972 -81049581 - L1MC4 LINE L1 -1339 6703 6649 183 42 0 0 chr11 69733972 69733996 -81049557 + (GA)n Simple_repeat Simple_repeat 2 25 0 2097 120 0 0 chr11 69733996 69734270 -81049283 - AluSq SINE Alu -39 274 1 350 145 0 72 chr11 69734270 69734285 -81049268 - L1MC4 LINE L1 -1391 6651 6640 2588 66 3 0 chr11 69734915 69735218 -81048335 + AluSp SINE Alu 1 304 -9 249 228 0 0 chr11 69735275 69735332 -81048221 - L1ME3 LINE L1 -211 5951 5895 267 122 0 0 chr11 69735348 69735389 -81048164 + Alu SINE Alu 256 296 -6 2359 97 0 0 chr11 69735393 69735691 -81047862 - AluSx SINE Alu -14 298 1 3240 159 9 83 chr11 69735776 69735832 -81047721 + L1PB4 LINE L1 5477 5536 -620 2353 95 3 0 chr11 69735832 69736128 -81047425 - AluSx SINE Alu -15 297 1 3240 159 9 83 chr11 69736128 69736805 -81046748 + L1PB4 LINE L1 5536 6156 0 483 99 72 54 chr11 69736935 69737046 -81046507 + L1MB2 LINE L1 6056 6168 -3 2185 111 4 0 chr11 69737053 69737333 -81046220 + AluSq SINE Alu 1 281 -32 197 83 28 0 chr11 69737334 69737370 -81046183 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 1694 128 0 119 chr11 69737415 69737532 -81046021 + AluJb SINE Alu 1 130 -172 198 0 0 0 chr11 69737532 69737554 -81045999 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1694 128 0 119 chr11 69737554 69737771 -81045782 + AluJb SINE Alu 130 295 -7 25 75 0 0 chr11 69737824 69737877 -81045676 + AT_rich Low_complexity Low_complexity 1 53 0 2603 56 0 0 chr11 69738372 69738676 -81044877 - AluY SINE Alu -5 306 3 710 163 0 0 chr11 69738678 69738813 -81044740 - L1M4 LINE L1 -857 5289 5155 2351 113 0 7 chr11 69738863 69739205 -81044348 - AluSg SINE Alu 0 340 1 2342 101 3 0 chr11 69739350 69739647 -81043906 - AluSq SINE Alu -3 310 13 2063 81 15 11 chr11 69739647 69739920 -81043633 - AluSq SINE Alu -14 299 26 265 306 82 42 chr11 69739992 69740219 -81043334 + L1M4 LINE L1 4073 4289 -1857 1547 173 96 0 chr11 69740219 69740490 -81043063 + AluJb SINE Alu 1 297 -15 265 306 82 42 chr11 69740490 69740713 -81042840 + L1M4 LINE L1 4289 4541 -1605 21 0 0 0 chr11 69740728 69740749 -81042804 + AT_rich Low_complexity Low_complexity 1 21 0 1756 142 6 84 chr11 69740830 69740976 -81042577 + AluJo SINE Alu 1 110 -202 2141 108 30 0 chr11 69740976 69741272 -81042281 + AluSx SINE Alu 7 311 -1 1756 142 6 84 chr11 69741272 69741448 -81042105 + AluJo SINE Alu 110 298 -14 222 304 0 0 chr11 69741732 69741801 -81041752 + T-rich Low_complexity Low_complexity 1 69 0 718 215 45 69 chr11 69741815 69742061 -81041492 + MLT1J LTR MaLR 231 470 -41 329 320 65 23 chr11 69742104 69742413 -81041140 + L1M4 LINE L1 4756 5077 -1069 295 111 0 0 chr11 69742580 69742625 -81040928 - MER58 DNA MER1_type -9 2411 2367 595 97 78 10 chr11 69742630 69742733 -81040820 + MER101 LTR ERV1 11 120 -354 2301 79 0 41 chr11 69742737 69743055 -81040498 - AluY SINE Alu -6 305 1 1410 137 40 4 chr11 69743055 69743281 -81040272 - AluJb SINE Alu -16 296 63 1783 205 71 25 chr11 69743300 69743739 -81039814 + LTR2B LTR ERV1 32 490 0 470 94 16 0 chr11 69743739 69743803 -81039750 - AluS SINE Alu -246 66 2 365 188 94 24 chr11 69743805 69743890 -81039663 - L1ME LINE L1 -506 5615 5525 301 212 80 35 chr11 69744005 69744118 -81039435 + L2 LINE L2 2286 2403 -911 2210 106 13 13 chr11 69745938 69746241 -81037312 - AluSx SINE Alu -9 303 1 2342 105 3 0 chr11 69746263 69746559 -81036994 + AluSp SINE Alu 1 297 -16 200 263 35 0 chr11 69746718 69746775 -81036778 + L2 LINE L2 1224 1282 -2032 2301 98 13 3 chr11 69746776 69747083 -81036470 - AluSq SINE Alu 0 313 4 951 79 0 0 chr11 69747085 69747199 -81036354 - AluSq/x SINE Alu -175 137 24 4188 260 78 25 chr11 69747210 69747666 -81035887 + L2 LINE L2 1279 1709 -1605 2293 93 0 0 chr11 69747666 69747956 -81035597 + AluSc SINE Alu 1 290 -19 4188 260 78 25 chr11 69747956 69748196 -81035357 + L2 LINE L2 1709 1935 -1379 1839 164 17 3 chr11 69748196 69748494 -81035059 - AluJb SINE Alu -10 302 1 4188 260 78 25 chr11 69748494 69749123 -81034430 + L2 LINE L2 1935 2676 -638 321 273 191 9 chr11 69749110 69749220 -81034333 + L2 LINE L2 3179 3308 -5 * 575 262 154 19 chr11 69749502 69749643 -81033910 + MIR SINE MIR 20 141 -121 2279 96 7 0 chr11 69749643 69749935 -81033618 + AluSg SINE Alu 1 294 -16 575 262 154 19 chr11 69749935 69750007 -81033546 + MIR SINE MIR 141 262 0 1564 172 6 80 chr11 69750380 69750511 -81033042 + AluSx SINE Alu 1 140 -172 2250 94 7 10 chr11 69750511 69750810 -81032743 - AluSq SINE Alu -15 298 1 1564 172 6 80 chr11 69750810 69751004 -81032549 + AluSx SINE Alu 140 302 -10 2283 80 40 10 chr11 69751057 69751359 -81032194 - AluY SINE Alu 0 311 1 258 286 32 0 chr11 69751821 69751884 -81031669 + MIR SINE MIR 82 146 -62 416 256 66 33 chr11 69751884 69751918 -81031635 - L2 LINE L2 0 3272 3241 2550 67 0 16 chr11 69751918 69752233 -81031320 + AluY SINE Alu 1 310 -1 416 256 66 33 chr11 69752233 69752319 -81031234 - L2 LINE L2 -31 3241 3148 2181 99 14 0 chr11 69752537 69752848 -81030705 - AluSq SINE Alu 0 313 1 544 204 204 8 chr11 69752953 69753085 -81030468 + AluJb SINE Alu 137 294 -18 1084 268 107 47 chr11 69753227 69753952 -81029601 + L2 LINE L2 2356 3256 -57 1981 114 75 0 chr11 69754295 69754576 -81028977 + AluSx SINE Alu 1 302 -10 242 298 0 0 chr11 69754648 69754705 -81028848 + MIR SINE MIR 198 254 -8 2153 129 3 0 chr11 69754745 69755040 -81028513 + AluSx SINE Alu 1 296 -16 2453 67 10 7 chr11 69755455 69755753 -81027800 + AluSq SINE Alu 9 307 -6 2166 115 26 7 chr11 69755755 69756060 -81027493 + AluSx SINE Alu 1 311 -1 33 25 0 0 chr11 69756353 69756393 -81027160 + AT_rich Low_complexity Low_complexity 1 40 0 831 161 0 0 chr11 69756393 69756511 -81027042 - AluJb SINE Alu -194 118 1 312 294 22 81 chr11 69756511 69756647 -81026906 + L1ME4a LINE L1 5593 5720 -401 296 299 58 23 chr11 69756687 69756808 -81026745 + L1ME4a LINE L1 5705 5820 -301 1936 96 7 70 chr11 69756808 69757110 -81026443 + AluSp SINE Alu 22 304 -9 2033 149 13 0 chr11 69757115 69757416 -81026137 + AluSx SINE Alu 1 305 -7 296 299 58 23 chr11 69757416 69757462 -81026091 + L1ME4a LINE L1 5823 5884 -237 821 160 15 0 chr11 69757579 69757710 -81025843 - FLAM_C SINE Alu 0 133 1 180 0 0 0 chr11 69758084 69758104 -81025449 + (A)n Simple_repeat Simple_repeat 1 20 0 2156 107 10 0 chr11 69759508 69759806 -81023747 - AluSx SINE Alu -11 301 1 2126 167 0 0 chr11 69759883 69760194 -81023359 - AluJb SINE Alu 0 312 2 410 269 152 86 chr11 69762895 69763108 -81020445 + L3 LINE CR1 1136 1334 -243 920 204 67 51 chr11 69763108 69763363 -81020190 + MIR SINE MIR 4 262 0 410 269 152 86 chr11 69763363 69763558 -81019995 + L3 LINE CR1 1334 1571 -6 610 285 30 6 chr11 69764042 69764207 -81019346 + MIR SINE MIR 27 195 -67 1061 217 18 5 chr11 69764596 69764817 -81018736 - MER58A DNA MER1_type 0 224 1 1805 157 7 20 chr11 69765564 69765864 -81017689 + AluJo SINE Alu 1 296 -16 737 193 29 167 chr11 69765880 69766186 -81017367 + L1MD3 LINE L1 7732 7995 0 2193 91 10 30 chr11 69766194 69766491 -81017062 - AluSg SINE Alu -19 291 1 1587 175 0 8 chr11 69766592 69766843 -81016710 + AluJb SINE Alu 26 274 -38 432 0 0 0 chr11 69766845 69766893 -81016660 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 1589 169 17 37 chr11 69766911 69767206 -81016347 + AluJo SINE Alu 1 289 -23 2359 97 10 3 chr11 69767236 69767544 -81016009 - AluSp SINE Alu -3 310 1 1548 151 82 56 chr11 69767730 69767841 -81015712 + AluJo SINE Alu 1 108 -204 2101 114 7 3 chr11 69767841 69768130 -81015423 + AluSc SINE Alu 1 290 -19 1548 151 82 56 chr11 69768130 69768322 -81015231 + AluJo SINE Alu 108 312 0 185 282 136 55 chr11 69768447 69768557 -81014996 - L2 LINE L2 -9 3263 3145 1958 144 45 106 chr11 69768696 69769119 -81014434 + MLT1D LTR MaLR 44 434 -71 1768 125 83 38 chr11 69769119 69769408 -81014145 - AluJb SINE Alu -10 302 1 1958 144 45 106 chr11 69769408 69769476 -81014077 + MLT1D LTR MaLR 434 505 0 280 243 65 37 chr11 69769514 69769621 -81013932 - LTR67 LTR ERVL -20 537 428 2269 113 0 7 chr11 69770741 69771042 -81012511 + AluSx SINE Alu 1 299 -13 1968 144 0 26 chr11 69771219 69771524 -81012029 - AluJb SINE Alu -2 310 14 219 301 89 16 chr11 69772344 69772467 -81011086 + L2 LINE L2 3182 3313 0 2362 99 3 0 chr11 69772684 69772986 -81010567 + AluSq SINE Alu 1 303 -10 1990 118 50 0 chr11 69772986 69773264 -81010289 + AluSq SINE Alu 1 293 -20 2156 124 14 0 chr11 69774675 69774966 -81008587 + AluSx SINE Alu 1 295 -17 2118 143 3 0 chr11 69776045 69776345 -81007208 + AluSx SINE Alu 1 301 -11 2331 99 0 7 chr11 69779382 69779685 -81003868 + AluSx SINE Alu 1 301 -11 2529 75 0 0 chr11 69780359 69780667 -81002886 - AluY SINE Alu -3 308 1 1140 167 77 13 chr11 69782405 69782429 -81001124 - L1MB7 LINE L1 -31 6153 6132 2254 87 0 0 chr11 69782429 69782705 -81000848 - AluSx SINE Alu -32 280 5 1140 167 77 13 chr11 69782705 69782914 -81000639 - L1MB7 LINE L1 -52 6132 5905 1881 129 42 0 chr11 69782921 69783185 -81000368 - AluSq SINE Alu -21 292 18 649 96 0 0 chr11 69783185 69783268 -81000285 - AluS SINE Alu -229 84 2 2172 106 3 0 chr11 69783289 69783599 -80999954 - AluSx SINE Alu 0 311 1 922 196 111 0 chr11 69783599 69783834 -80999719 - L1MB7 LINE L1 -292 5892 5632 261 325 0 12 chr11 69783854 69783937 -80999616 + GA-rich Low_complexity Low_complexity 5 86 0 1622 158 63 0 chr11 69785444 69785728 -80997825 - AluJb SINE Alu -10 302 1 2398 70 0 0 chr11 69785778 69786079 -80997474 + AluY SINE Alu 1 301 -10 914 188 0 0 chr11 69786096 69786250 -80997303 + AluSg/x SINE Alu 140 293 -19 379 213 75 0 chr11 69786367 69786461 -80997092 + L2 LINE L2 3193 3293 -20 198 357 70 42 chr11 69786610 69786753 -80996800 - L2 LINE L2 -64 3249 3103 849 182 0 0 chr11 69786872 69787188 -80996365 + (TCCA)n Simple_repeat Simple_repeat 1 316 0 1220 310 24 63 chr11 69787970 69788245 -80995308 + L1MC4a LINE L1 5343 5584 -2224 965 163 0 41 chr11 69788245 69788417 -80995136 + FRAM SINE Alu 1 165 -1 1220 310 24 63 chr11 69788417 69788731 -80994822 + L1MC4a LINE L1 5584 5909 -1899 1994 136 0 34 chr11 69789002 69789325 -80994228 - AluSx SINE Alu 0 312 1 1605 153 89 0 chr11 69789362 69789643 -80993910 + AluJb SINE Alu 1 306 -6 2183 84 0 0 chr11 69789664 69789980 -80993573 - AluSx SINE Alu 0 316 1 977 230 117 8 chr11 69790123 69790371 -80993182 - MLT1K LTR MaLR -17 571 297 222 336 131 5 chr11 69790582 69790796 -80992757 + L2 LINE L2 2820 3060 -212 2323 76 0 13 chr11 69792120 69792435 -80991118 - AluY SINE Alu 0 311 1 2209 107 3 0 chr11 69792435 69792733 -80990820 - AluSx SINE Alu -13 299 1 188 382 67 0 chr11 69793824 69793913 -80989640 - MIR3 SINE MIR -48 160 66 211 225 39 20 chr11 69794080 69794138 -80989415 + MIR SINE MIR 95 146 -62 1665 178 34 131 chr11 69794429 69794535 -80989018 - MLT1D LTR MaLR 0 505 390 2270 103 0 0 chr11 69794535 69794836 -80988717 + AluSx SINE Alu 1 301 -11 1665 178 34 131 chr11 69794836 69795040 -80988513 - MLT1D LTR MaLR -115 390 168 2080 114 0 26 chr11 69795040 69795346 -80988207 - AluSg SINE Alu -12 298 1 1665 178 34 131 chr11 69795346 69795474 -80988079 - MLT1D LTR MaLR -337 168 29 2296 56 0 94 chr11 69795474 69795815 -80987738 - AluY SINE Alu -2 309 1 1665 178 34 131 chr11 69795815 69795889 -80987664 - MLT1D LTR MaLR -476 29 45 1842 152 13 19 chr11 69795889 69796198 -80987355 - AluJb SINE Alu -5 307 1 1665 178 34 131 chr11 69796198 69796239 -80987314 - MLT1D LTR MaLR -459 46 3 284 278 0 0 chr11 69796567 69796639 -80986914 + L2 LINE L2 3240 3311 -2 2050 73 80 0 chr11 69796707 69796981 -80986572 + AluSp SINE Alu 1 296 -17 352 283 28 9 chr11 69798793 69798899 -80984654 - MIR SINE MIR -63 145 38 310 308 10 0 chr11 69799264 69799368 -80984185 + MIR SINE MIR 35 139 -123 241 214 77 75 chr11 69800197 69800338 -80983215 + MIR SINE MIR 10 138 -70 312 306 58 16 chr11 69800497 69800618 -80982935 - L1ME4a LINE L1 -14 6107 5982 1353 171 21 93 chr11 69800802 69801136 -80982417 - AluSx SINE Alu -1 311 2 2505 47 0 0 chr11 69801139 69801440 -80982113 - AluY SINE Alu -10 301 1 1079 103 0 0 chr11 69801442 69801587 -80981966 - AluSq/x SINE Alu -167 145 1 351 0 0 0 chr11 69801587 69801626 -80981927 + (T)n Simple_repeat Simple_repeat 1 39 0 2011 115 7 7 chr11 69801851 69802146 -80981407 - AluSc SINE Alu -14 295 1 248 260 42 42 chr11 69802691 69802787 -80980766 + MIR3 SINE MIR 77 172 -36 2167 110 0 13 chr11 69802903 69803203 -80980350 + AluSx SINE Alu 1 296 -16 531 303 76 16 chr11 69805234 69805419 -80978134 - L2 LINE L2 0 3313 3118 284 278 33 11 chr11 69805613 69805648 -80977905 + MIR SINE MIR 113 146 -116 2277 102 0 0 chr11 69805648 69805952 -80977601 + AluSg SINE Alu 1 304 -6 284 278 33 11 chr11 69805952 69806006 -80977547 + MIR SINE MIR 146 204 -58 986 151 12 12 chr11 69806023 69806224 -80977329 - AluSg/x SINE Alu 0 312 129 2075 131 0 3 chr11 69806227 69806540 -80977013 - AluSx SINE Alu 0 312 1 297 0 0 0 chr11 69806956 69806989 -80976564 + (TG)n Simple_repeat Simple_repeat 1 33 0 1850 87 28 105 chr11 69806997 69807192 -80976361 - AluSx SINE Alu 0 312 160 1854 98 76 4 chr11 69807192 69807468 -80976085 - AluSc SINE Alu -11 298 3 1850 87 28 105 chr11 69807468 69807617 -80975936 - AluSx SINE Alu -152 160 1 1910 116 34 0 chr11 69807617 69807911 -80975642 - AluSg SINE Alu -6 304 1 920 130 0 0 chr11 69807916 69808047 -80975506 - AluJb SINE Alu -181 131 1 1476 121 48 4 chr11 69808054 69808302 -80975251 - L1MB3 LINE L1 0 6183 5925 1939 136 33 12 chr11 69808304 69808635 -80974918 - L1MB3 LINE L1 -308 5875 5538 2172 119 0 3 chr11 69808643 69808955 -80974598 - AluSq SINE Alu -2 311 1 2332 83 0 3 chr11 69809497 69809797 -80973756 + AluSx SINE Alu 1 299 -13 2259 88 0 16 chr11 69810094 69810400 -80973153 + AluSx SINE Alu 1 301 -11 1981 106 33 0 chr11 69810634 69810907 -80972646 + AluSq SINE Alu 13 294 -19 1383 175 39 32 chr11 69810926 69811211 -80972342 + AluJo SINE Alu 3 289 -23 793 201 7 7 chr11 69811228 69811372 -80972181 + AluJb SINE Alu 132 275 -37 2296 99 0 0 chr11 69811408 69811720 -80971833 + AluSx SINE Alu 1 312 0 2175 89 17 3 chr11 69811834 69812136 -80971417 + AluSg SINE Alu 1 306 -4 528 338 64 19 chr11 69812597 69812863 -80970690 - ERVL LTR ERVL -615 5149 4872 2149 114 3 0 chr11 69812981 69813289 -80970264 - AluSx SINE Alu -3 309 1 479 236 64 56 chr11 69813289 69813408 -80970145 + L1ME3A LINE L1 5700 5817 -353 638 183 122 0 chr11 69813408 69813523 -80970030 + FLAM_C SINE Alu 2 130 -3 1231 199 39 62 chr11 69813533 69813639 -80969914 + AluJo SINE Alu 2 109 -193 2255 93 0 40 chr11 69813639 69813962 -80969591 - AluSg SINE Alu 0 310 1 1231 199 39 62 chr11 69813962 69814162 -80969391 + AluJo SINE Alu 109 301 -1 479 236 64 56 chr11 69814162 69814404 -80969149 + L1ME3A LINE L1 5825 6109 -61 549 106 12 0 chr11 69814407 69814492 -80969061 + L1MA3 LINE L1 6220 6305 0 834 39 0 0 chr11 69814515 69814617 -80968936 + AluSp/q SINE Alu 201 302 -11 471 208 10 0 chr11 69814700 69814796 -80968757 + HsTC2 DNA Tc2 1443 1539 -359 1734 97 39 87 chr11 69814799 69815128 -80968425 + AluSq SINE Alu 1 313 0 406 165 61 35 chr11 69815128 69815154 -80968399 - L1ME LINE L1 -461 5709 5685 2252 83 0 13 chr11 69815154 69815456 -80968097 - AluY SINE Alu -13 298 1 871 173 0 0 chr11 69815464 69815597 -80967956 - FLAM_A SINE Alu 0 133 1 406 165 61 35 chr11 69815597 69815676 -80967877 - L1ME LINE L1 -491 5679 5592 804 107 0 0 chr11 69815679 69815800 -80967753 + (TA)n Simple_repeat Simple_repeat 1 121 0 1124 143 0 16 chr11 69815801 69815983 -80967570 - AluJo/FRAM SINE Alu 0 312 134 2550 29 0 10 chr11 69815983 69816310 -80967243 - AluY SINE Alu 0 311 1 2216 98 3 3 chr11 69818515 69818821 -80964732 - AluSq SINE Alu -7 306 1 1839 158 10 14 chr11 69818918 69819215 -80964338 + AluSx SINE Alu 1 296 -16 2148 101 10 0 chr11 69819222 69819518 -80964035 + AluSc SINE Alu 5 303 -6 1934 88 77 0 chr11 69819518 69819791 -80963762 + AluSg SINE Alu 1 295 -15 1928 99 43 53 chr11 69819878 69820182 -80963371 + AluSg SINE Alu 1 301 -9 333 0 0 0 chr11 69820182 69820219 -80963334 + (TA)n Simple_repeat Simple_repeat 2 38 0 * 441 0 0 0 chr11 69820218 69820267 -80963286 + (GA)n Simple_repeat Simple_repeat 2 50 0 1457 185 0 100 chr11 69820326 69820509 -80963044 - AluJb SINE Alu -5 297 160 2282 80 13 6 chr11 69820509 69820820 -80962733 - AluSp SINE Alu 0 313 1 1457 185 0 100 chr11 69820820 69820966 -80962587 - AluJb SINE Alu -142 160 1 218 259 19 0 chr11 69821636 69821690 -80961863 - MIR3 SINE MIR -39 169 115 807 176 8 0 chr11 69821846 69821977 -80961576 + FLAM_A SINE Alu 1 132 -1 281 204 20 30 chr11 69822431 69822611 -80960942 - L1MC4a LINE L1 -339 5835 5762 377 209 81 0 chr11 69822639 69822725 -80960828 - LTR16C LTR ERVL -14 477 385 212 381 75 22 chr11 69823854 69823988 -80959565 - L2 LINE L2 -32 3240 3100 29 21 0 21 chr11 69824516 69824547 -80959006 + AT_rich Low_complexity Low_complexity 1 32 -14 1671 149 0 33 chr11 69824547 69824823 -80958730 + AluJo SINE Alu 1 267 -45 29 21 0 21 chr11 69824823 69824838 -80958715 + AT_rich Low_complexity Low_complexity 32 46 0 404 215 21 0 chr11 69824840 69824933 -80958620 - L1MC4 LINE L1 -31 8011 7917 1145 152 20 25 chr11 69824967 69825164 -80958389 + AluJo SINE Alu 86 281 -31 317 244 110 8 chr11 69825321 69825448 -80958105 - MIR SINE MIR -31 231 92 2066 72 72 7 chr11 69825450 69825729 -80957824 + AluY SINE Alu 1 297 -14 2315 88 3 0 chr11 69825737 69826043 -80957510 + AluSp SINE Alu 1 307 -6 630 297 128 32 chr11 69829241 69829718 -80953835 - L2 LINE L2 -14 3299 2869 2155 89 4 0 chr11 69829718 69830033 -80953520 - AluSx SINE Alu 0 317 2 230 56 28 0 chr11 69830033 69830069 -80953484 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1516 168 14 25 chr11 69830069 69830355 -80953198 - AluJo SINE Alu -29 283 1 2070 125 26 0 chr11 69830365 69830668 -80952885 - AluSq SINE Alu -2 311 1 630 297 128 32 chr11 69830668 69830737 -80952816 - L2 LINE L2 -452 2861 2646 1801 141 7 4 chr11 69830737 69831014 -80952539 + AluJo SINE Alu 14 291 -21 1782 157 7 3 chr11 69831020 69831306 -80952247 + AluJo SINE Alu 3 289 -23 189 0 0 0 chr11 69831332 69831353 -80952200 + (A)n Simple_repeat Simple_repeat 1 21 0 2460 43 0 3 chr11 69832235 69832535 -80951018 + AluY SINE Alu 1 299 -12 194 0 0 37 chr11 69832797 69832824 -80950729 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1931 135 6 28 chr11 69833084 69833403 -80950150 - AluJb SINE Alu 0 312 1 1581 165 53 30 chr11 69833434 69833737 -80949816 + AluSx SINE Alu 1 310 -2 362 157 14 14 chr11 69833742 69833812 -80949741 + MER58 DNA MER1_type 2347 2416 -4 322 270 35 61 chr11 69834073 69834188 -80949365 - MER5B DNA MER1_type -36 142 31 22 0 0 0 chr11 69836100 69836122 -80947431 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 69837521 69837543 -80946010 + GC_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr11 69837696 69837731 -80945822 + GC_rich Low_complexity Low_complexity 1 35 0 196 353 60 0 chr11 69840891 69841041 -80942512 - L2 LINE L2 -301 2971 2813 2261 96 6 6 chr11 69841259 69841572 -80941981 + AluSq SINE Alu 1 313 0 2296 101 0 0 chr11 69841642 69841948 -80941605 + AluSx SINE Alu 1 306 -6 2274 95 3 0 chr11 69841954 69842258 -80941295 + AluSx SINE Alu 3 307 -5 1077 230 81 113 chr11 69842263 69842928 -80940625 + MER76 LTR ERV 12 655 -33 323 309 66 13 chr11 69842932 69843084 -80940469 - L3b LINE CR1 -310 1273 1114 2216 90 0 7 chr11 69843088 69843420 -80940133 - AluSx SINE Alu 0 330 1 2126 119 3 3 chr11 69843422 69843724 -80939829 - AluSp SINE Alu -11 302 1 2303 84 10 0 chr11 69843732 69844042 -80939511 - AluSp SINE Alu 0 313 1 2316 77 3 3 chr11 69844078 69844375 -80939178 + AluSp SINE Alu 1 297 -16 255 380 16 16 chr11 69844587 69844708 -80938845 - L2 LINE L2 0 3313 3193 2156 108 3 16 chr11 69844721 69845037 -80938516 - AluSp SINE Alu -1 312 1 242 286 111 19 chr11 69845201 69845385 -80938168 - L2 LINE L2 -309 2963 2751 243 0 0 0 chr11 69845395 69845422 -80938131 + (T)n Simple_repeat Simple_repeat 1 27 0 2041 115 3 35 chr11 69845472 69845785 -80937768 - AluSg SINE Alu -7 303 1 1563 175 22 45 chr11 69845808 69846122 -80937431 - AluJo SINE Alu -5 307 1 2167 78 3 3 chr11 69846127 69846439 -80937114 - AluSx SINE Alu 0 312 1 285 252 0 90 chr11 69846441 69846552 -80937001 - L2 LINE L2 -600 2714 2614 206 219 0 0 chr11 69846923 69846964 -80936589 - MIR SINE MIR -6 256 216 237 65 0 0 chr11 69846964 69846995 -80936558 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1865 128 35 3 chr11 69846997 69847286 -80936267 - AluSq SINE Alu -15 298 1 920 179 6 0 chr11 69847286 69847454 -80936099 - L1M2 LINE L1 -651 5661 5493 2514 58 0 0 chr11 69847454 69847762 -80935791 - AluY SINE Alu -3 308 1 2537 12 0 73 chr11 69847767 69848095 -80935458 - AluY SINE Alu -7 304 1 1066 68 0 0 chr11 69848097 69848229 -80935324 - AluY SINE Alu -179 132 1 724 182 52 18 chr11 69848229 69848366 -80935187 - L1MC/D LINE L1 -827 5464 5332 2155 109 7 3 chr11 69848366 69848668 -80934885 - AluSq SINE Alu 0 313 11 724 182 52 18 chr11 69848668 69848734 -80934819 - L1MC/D LINE L1 -959 5332 5270 2321 100 0 3 chr11 69848806 69849116 -80934437 + AluSx SINE Alu 2 310 -2 380 280 111 42 chr11 69849255 69849587 -80933966 - L1MEd LINE L1 -5667 452 98 779 150 0 0 chr11 69849592 69849712 -80933841 - FRAM SINE Alu -12 164 45 2241 101 35 3 chr11 69849715 69850082 -80933471 - LTR15 LTR ERV1 -6 487 109 2350 59 0 16 chr11 69850082 69850386 -80933167 - AluY SINE Alu -12 299 1 258 207 100 107 chr11 69850577 69850597 -80932956 - L2 LINE L2 0 3272 3253 1635 166 6 56 chr11 69850597 69850779 -80932774 - AluJb SINE Alu -9 303 142 2248 112 3 6 chr11 69850779 69851092 -80932461 - AluSx SINE Alu 0 312 1 1635 166 6 56 chr11 69851092 69851228 -80932325 - AluJb SINE Alu -170 142 1 258 207 100 107 chr11 69851228 69851266 -80932287 - L2 LINE L2 -19 3253 3216 2427 49 0 0 chr11 69851266 69851580 -80931973 - AluY SINE Alu 0 314 1 258 207 100 107 chr11 69851580 69851659 -80931894 - L2 LINE L2 -56 3216 3134 546 246 49 49 chr11 69851730 69851754 -80931799 + MER5A DNA MER1_type 1 24 -165 180 0 0 0 chr11 69851754 69851774 -80931779 + (CAG)n Simple_repeat Simple_repeat 1 20 0 546 246 49 49 chr11 69851774 69851932 -80931621 + MER5A DNA MER1_type 23 183 -6 259 287 175 42 chr11 69851940 69852020 -80931533 - L2 LINE L2 -225 3047 2979 1644 149 9 81 chr11 69852020 69852164 -80931389 + AluJb SINE Alu 1 154 -158 1917 103 18 4 chr11 69852164 69852437 -80931116 + AluSq SINE Alu 1 277 -36 207 0 0 0 chr11 69852441 69852464 -80931089 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2127 103 7 0 chr11 69852468 69852788 -80930765 + AluSp SINE Alu 1 322 0 1644 149 9 81 chr11 69852788 69852952 -80930601 + AluJb SINE Alu 160 298 -14 259 287 175 42 chr11 69852952 69853014 -80930539 - L2 LINE L2 -293 2979 2886 2260 85 0 3 chr11 69853137 69853430 -80930123 + AluSg1 SINE Alu 1 292 -17 906 121 0 8 chr11 69853500 69853624 -80929929 + FLAM_C SINE Alu 1 123 -10 183 343 98 10 chr11 69853758 69853860 -80929693 - L2 LINE L2 -976 2338 2228 2156 110 0 0 chr11 69854332 69854631 -80928922 - AluY SINE Alu -12 299 1 2062 132 0 0 chr11 69854634 69854929 -80928624 - AluSx SINE Alu -17 295 1 323 139 0 76 chr11 69855341 69855420 -80928133 - LTR19C LTR ERV1 -87 692 620 1860 110 60 11 chr11 69855686 69855968 -80927585 + AluSx SINE Alu 1 296 -16 744 206 5 75 chr11 69856167 69856310 -80927243 - MER5A DNA MER1_type -4 185 58 1729 186 0 3 chr11 69856310 69856605 -80926948 - AluJb SINE Alu -18 294 1 744 206 5 75 chr11 69856605 69856660 -80926893 - MER5A DNA MER1_type -131 58 1 963 102 0 0 chr11 69856756 69856883 -80926670 + AluSq/x SINE Alu 11 137 -175 308 333 33 27 chr11 69857061 69857211 -80926342 + MIR SINE MIR 4 154 -108 1804 185 3 0 chr11 69857412 69857714 -80925839 + AluJo SINE Alu 10 312 0 311 257 156 9 chr11 69857923 69858032 -80925521 - L2 LINE L2 -6 3266 3142 201 182 91 15 chr11 69858339 69858405 -80925148 - L2 LINE L2 -525 2789 2719 2303 80 0 26 chr11 69858510 69858823 -80924730 + AluY SINE Alu 1 305 -6 1939 134 7 3 chr11 69863864 69864156 -80919397 - AluJb SINE Alu -19 293 1 854 139 0 0 chr11 69864160 69864282 -80919271 - FLAM_C SINE Alu -17 126 5 1681 100 52 12 chr11 69864285 69864536 -80919017 - AluJo SINE Alu -1 311 51 545 283 172 6 chr11 69865349 69865785 -80917768 + L2 LINE L2 2742 3271 -1 2381 90 0 0 chr11 69866204 69866516 -80917037 + AluSx SINE Alu 1 312 0 729 151 0 0 chr11 69866524 69866643 -80916910 + LTR8 LTR ERV1 573 691 0 212 229 55 73 chr11 69867006 69867115 -80916438 + L2 LINE L2 2890 2996 -276 1509 175 14 28 chr11 69867437 69867723 -80915830 - AluJo SINE Alu -13 299 18 2329 44 7 7 chr11 69868530 69868825 -80914728 - AluY SINE Alu -16 295 1 476 205 22 16 chr11 69868832 69868950 -80914603 - MIR3 SINE MIR -23 185 88 23 0 0 0 chr11 69869267 69869290 -80914263 + GC_rich Low_complexity Low_complexity 1 23 0 644 132 0 0 chr11 69870123 69870214 -80913339 + AluJ/FLAM SINE Alu 12 102 -210 2418 80 0 0 chr11 69870256 69870567 -80912986 - AluY SINE Alu 0 311 1 2186 97 7 7 chr11 69870611 69870909 -80912644 + AluSp SINE Alu 1 298 -15 231 237 32 4 chr11 69870909 69870970 -80912583 - MIR SINE MIR -38 170 102 271 327 141 19 chr11 69871163 69871319 -80912234 - MIR SINE MIR -79 183 9 2304 105 0 0 chr11 69874235 69874540 -80909013 - AluSx SINE Alu -7 305 1 240 366 119 0 chr11 69874575 69874709 -80908844 + MIR3 SINE MIR 35 184 -24 543 291 109 20 chr11 69875473 69875802 -80907751 - L2 LINE L2 -164 3149 2794 303 279 32 0 chr11 69876053 69876156 -80907397 + MIR SINE MIR 44 157 -51 2087 138 0 0 chr11 69877694 69877990 -80905563 + AluSx SINE Alu 1 296 -16 2250 82 14 0 chr11 69877991 69878284 -80905269 + AluSp SINE Alu 2 298 -15 285 313 61 15 chr11 69880042 69880173 -80903380 - L2 LINE L2 -6 3307 3171 766 266 195 30 chr11 69880174 69880442 -80903111 - L2 LINE L2 -636 2678 2455 1727 128 52 14 chr11 69880442 69880595 -80902958 - AluJb SINE Alu -13 299 153 2109 101 44 0 chr11 69880595 69880892 -80902661 - AluSq SINE Alu -3 310 1 1727 128 52 14 chr11 69880892 69881026 -80902527 - AluJb SINE Alu -159 153 1 766 266 195 30 chr11 69881026 69881219 -80902334 - L2 LINE L2 -859 2455 2141 263 248 59 59 chr11 69881449 69881550 -80902003 - L2 LINE L2 -1879 1435 1335 2377 73 0 7 chr11 69881723 69882024 -80901529 - AluY SINE Alu -12 299 1 192 330 49 22 chr11 69882138 69882323 -80901230 + L2 LINE L2 2871 3060 -212 197 139 10 59 chr11 69884033 69884134 -80899419 + CT-rich Low_complexity Low_complexity 3 98 0 195 42 0 0 chr11 69884545 69884569 -80898984 + (T)n Simple_repeat Simple_repeat 1 24 0 1641 227 112 40 chr11 69884582 69884792 -80898761 - L1M4 LINE L1 -1029 5117 4923 1982 134 0 16 chr11 69884792 69885099 -80898454 + AluSx SINE Alu 1 302 -10 1641 227 112 40 chr11 69885099 69885628 -80897925 - L1M4 LINE L1 -1223 4923 4325 1577 140 103 15 chr11 69885628 69885900 -80897653 - AluJo SINE Alu -13 299 4 2547 82 0 0 chr11 69885902 69886208 -80897345 - AluSx SINE Alu -6 306 1 524 305 88 3 chr11 69886213 69886498 -80897055 - L1M4 LINE L1 -1903 4243 3935 226 247 32 43 chr11 69886887 69886980 -80896573 + L2 LINE L2 3168 3259 -13 2140 92 4 7 chr11 69888069 69888373 -80895180 + AluSx SINE Alu 5 307 0 1669 161 3 25 chr11 69888443 69888728 -80894825 + AluJo SINE Alu 1 279 -33 30 0 0 0 chr11 69888728 69888758 -80894795 + AT_rich Low_complexity Low_complexity 1 30 0 2115 104 7 17 chr11 69888766 69888920 -80894633 - AluY SINE Alu -25 286 135 2532 67 0 3 chr11 69888920 69889219 -80894334 - AluY SINE Alu -13 298 1 2115 104 7 17 chr11 69889219 69889353 -80894200 - AluY SINE Alu -176 135 1 2196 97 3 10 chr11 69889383 69889698 -80893855 + AluSp SINE Alu 1 313 0 724 214 157 9 chr11 69889706 69889935 -80893618 + L1MD3 LINE L1 7730 7992 -3 2183 103 4 0 chr11 69889954 69890268 -80893285 - AluSx SINE Alu 0 315 1 2359 50 47 27 chr11 69890326 69890623 -80892930 + AluY SINE Alu 1 303 -8 2550 65 3 0 chr11 69890785 69891092 -80892461 - AluSp SINE Alu -5 308 1 416 314 81 44 chr11 69891125 69891339 -80892214 - L1ME4a LINE L1 -286 5835 5602 1725 180 14 3 chr11 69891339 69891628 -80891925 - AluJb SINE Alu -20 292 1 416 314 81 44 chr11 69891628 69891757 -80891796 - L1ME4a LINE L1 -519 5602 5479 2277 102 7 3 chr11 69891811 69892105 -80891448 - AluSx SINE Alu -17 295 1 1730 170 44 0 chr11 69892215 69892509 -80891044 + AluJo SINE Alu 1 307 -5 1504 176 52 8 chr11 69892528 69892795 -80890758 + AluJb SINE Alu 14 292 -20 1014 114 8 0 chr11 69892802 69892934 -80890619 + AluSg SINE Alu 1 133 -177 2285 96 3 3 chr11 69892934 69893227 -80890326 + AluSc SINE Alu 1 293 -16 2639 54 0 10 chr11 69893227 69893541 -80890012 + AluY SINE Alu 1 311 0 1015 208 65 23 chr11 69893547 69893807 -80889746 - L1MC3 LINE L1 -105 7680 7410 2306 90 30 0 chr11 69895705 69896006 -80887547 - AluSg SINE Alu 0 310 1 1760 143 47 27 chr11 69896875 69897176 -80886377 + AluJb SINE Alu 1 307 -5 2376 86 7 0 chr11 69897184 69897485 -80886068 + AluSp SINE Alu 1 303 -10 1540 215 33 23 chr11 69897488 69897884 -80885669 - MLT1C LTR MaLR -67 400 1 217 271 52 0 chr11 69901642 69901738 -80881815 - L2 LINE L2 -255 3058 2958 2036 113 19 35 chr11 69902380 69902691 -80880862 + AluSx SINE Alu 1 306 -6 1410 141 12 55 chr11 69903332 69903588 -80879965 - AluJo SINE Alu -31 281 37 194 0 39 0 chr11 69904521 69904547 -80879006 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 418 281 73 69 chr11 69911747 69912035 -80871518 - L1ME4a LINE L1 -295 5826 5538 616 301 120 21 chr11 69912134 69912200 -80871353 - L1ME4a LINE L1 -744 5402 5344 345 47 0 0 chr11 69912200 69912243 -80871310 + (TG)n Simple_repeat Simple_repeat 1 43 0 616 301 120 21 chr11 69912243 69912536 -80871017 - L1ME4a LINE L1 -802 5344 5003 311 284 87 2 chr11 69912778 69912882 -80870671 + MIR SINE MIR 51 161 -47 328 326 185 34 chr11 69913281 69913606 -80869947 - L1ME LINE L1 -293 5828 5455 4349 167 34 41 chr11 69913609 69914947 -80868606 - L1MB2 LINE L1 -9 6162 4984 3065 123 41 30 chr11 69915414 69915950 -80867603 - L1PB3 LINE L1 0 6154 5613 455 184 0 0 chr11 69916467 69916554 -80866999 - L1PB3 LINE L1 -3 6151 6065 231 300 12 0 chr11 69916820 69916900 -80866653 - L1ME LINE L1 -335 5829 5749 596 286 92 25 chr11 69917128 69917535 -80866018 - L1MC4a LINE L1 -350 5771 5492 311 321 36 42 chr11 69917950 69918143 -80865410 - L1ME4a LINE L1 -34 6087 5896 612 321 136 13 chr11 69919332 69919781 -80863772 - L1MC4a LINE L1 -1896 5912 5409 528 59 0 0 chr11 69919904 69919972 -80863581 + (TA)n Simple_repeat Simple_repeat 1 68 0 4074 192 19 17 chr11 69921111 69922111 -80861442 - L1MB7 LINE L1 -41 6143 5144 1769 158 49 11 chr11 69922121 69922405 -80861148 + AluSx SINE Alu 1 295 -17 784 167 0 0 chr11 69922699 69922825 -80860728 + AluJo SINE Alu 5 130 -172 1090 122 50 44 chr11 69923034 69923215 -80860338 + AluJo SINE Alu 131 312 0 2079 87 8 8 chr11 69923321 69923585 -80859968 + AluSg SINE Alu 39 302 -8 398 289 39 33 chr11 69923691 69923871 -80859682 + MIR SINE MIR 13 193 -69 740 153 0 29 chr11 69924048 69924185 -80859368 - FLAM_C SINE Alu 0 133 1 468 327 206 3 chr11 69924196 69924535 -80859018 - L1M4 LINE L1 -2660 3486 3079 2309 100 3 0 chr11 69925324 69925613 -80857940 + AluSg SINE Alu 4 293 -17 513 0 0 0 chr11 69926984 69927041 -80856512 + (TG)n Simple_repeat Simple_repeat 2 58 0 188 180 48 21 chr11 69927109 69927185 -80856368 + MIR SINE MIR 61 136 -72 207 188 0 21 chr11 69928104 69928152 -80855401 + GA-rich Low_complexity Low_complexity 4 50 0 263 221 0 116 chr11 69929777 69929824 -80853729 + MIR SINE MIR 102 134 -128 1044 158 0 0 chr11 69929824 69929989 -80853564 + FRAM SINE Alu 1 165 -1 263 221 0 116 chr11 69929989 69930036 -80853517 + MIR SINE MIR 134 185 -77 2216 84 35 11 chr11 69930087 69930374 -80853179 + AluSx SINE Alu 5 298 -14 839 198 145 64 chr11 69930382 69930513 -80853040 - MLT1A1 LTR MaLR -59 306 187 2134 120 3 17 chr11 69930513 69930813 -80852740 - AluSc SINE Alu -13 296 1 839 198 145 64 chr11 69930813 69930964 -80852589 - MLT1A1 LTR MaLR -178 187 1 2379 92 0 0 chr11 69932386 69932681 -80850872 - AluY SINE Alu -16 295 1 2184 114 0 3 chr11 69932684 69932993 -80850560 - AluSx SINE Alu 0 312 1 21 0 0 0 chr11 69932993 69933014 -80850539 + AT_rich Low_complexity Low_complexity 1 21 0 747 31 0 54 chr11 69933029 69933158 -80850395 + (TCTCCC)n Simple_repeat Simple_repeat 3 124 0 269 254 29 43 chr11 69933268 69933406 -80850147 - L1M4 LINE L1 -838 5308 5173 1959 157 25 0 chr11 69933408 69933765 -80849788 + L1 LINE L1 4672 5037 -1109 951 103 0 0 chr11 69933767 69933884 -80849669 - AluSg SINE Alu -192 118 2 2738 7 0 0 chr11 69933904 69934192 -80849361 - AluYa5 SINE Alu -23 288 1 2657 208 19 36 chr11 69934198 69934423 -80849130 - L1M4 LINE L1 -1447 4699 4472 2600 56 0 7 chr11 69934423 69934729 -80848824 - AluY SINE Alu -7 304 1 2657 208 19 36 chr11 69934729 69935440 -80848113 - L1M4 LINE L1 -1674 4472 2490 857 119 0 8 chr11 69935441 69935559 -80847994 + AluJo SINE Alu 1 117 -195 702 100 0 6 chr11 69935559 69935820 -80847733 - AluY SINE Alu -2 309 3 639 158 0 86 chr11 69935825 69935964 -80847589 + AluJo SINE Alu 105 231 -81 250 125 0 0 chr11 69935974 69936014 -80847539 - Alu SINE Alu -9 293 254 890 234 39 13 chr11 69936015 69936097 -80847456 - L1M4 LINE L1 -2035 4111 4033 2531 60 0 3 chr11 69936097 69936398 -80847155 - AluY SINE Alu -11 300 1 890 234 39 13 chr11 69936398 69936546 -80847007 - L1M4 LINE L1 -2113 4033 3875 3026 154 82 5 chr11 69936614 69937198 -80846355 - L1MD1 LINE L1 -37 6205 5577 1994 158 3 0 chr11 69937199 69937497 -80846056 + AluJb SINE Alu 1 299 -13 746 257 64 31 chr11 69937498 69937825 -80845728 - L1M4 LINE L1 -1566 4580 4243 1896 171 0 0 chr11 69937906 69938198 -80845355 - AluJb SINE Alu -15 297 6 1655 205 0 13 chr11 69938205 69938503 -80845050 - AluJo SINE Alu -18 294 1 868 296 108 8 chr11 69938578 69939200 -80844353 - L1M4 LINE L1 -1440 4706 4023 11020 31 6 99 chr11 69939542 69941069 -80842484 - SVA Other Other 0 1386 2 2030 122 42 0 chr11 69941199 69941485 -80842068 - AluSg SINE Alu -12 298 1 2945 204 99 11 chr11 69941806 69942515 -80841038 + MER21B LTR ERV1 82 852 -11 1716 183 153 58 chr11 69942549 69942900 -80840653 + Tigger6b DNA MER2_type 3 320 -1277 2325 103 3 13 chr11 69942900 69943210 -80840343 + AluSx SINE Alu 1 307 -5 1716 183 153 58 chr11 69943210 69943345 -80840208 + Tigger6b DNA MER2_type 320 441 -1156 2437 153 44 7 chr11 69943345 69943756 -80839797 + MSTB LTR MaLR 1 426 0 1716 183 153 58 chr11 69943756 69943799 -80839754 + Tigger6b DNA MER2_type 441 583 -1014 809 118 110 0 chr11 69943799 69943926 -80839627 - FLAM_C SINE Alu 0 143 3 1718 157 50 13 chr11 69943929 69944247 -80839306 + Tigger6b DNA MER2_type 561 890 -707 945 186 13 0 chr11 69944247 69944403 -80839150 - AluJo SINE Alu -8 294 137 1306 123 5 5 chr11 69944425 69944612 -80838941 + AluSx SINE Alu 1 187 -125 615 77 0 0 chr11 69944613 69944691 -80838862 + AluSg SINE Alu 54 131 -179 840 181 0 8 chr11 69944696 69944823 -80838730 - AluJo SINE Alu -175 127 2 903 142 68 0 chr11 69944886 69945048 -80838505 + Tigger6b DNA MER2_type 1081 1253 -344 2412 100 0 0 chr11 69945052 69945352 -80838201 - AluSq SINE Alu -13 300 1 1908 142 0 65 chr11 69945352 69945676 -80837877 - AluJo SINE Alu -9 303 1 445 277 37 112 chr11 69945699 69945922 -80837631 - HAL1b LINE L1 -747 601 436 2388 61 3 14 chr11 69945922 69946217 -80837336 + AluY SINE Alu 1 292 -19 445 277 37 112 chr11 69946217 69946299 -80837254 - HAL1b LINE L1 -912 436 349 2135 113 0 3 chr11 69946314 69946597 -80836956 + AluSx SINE Alu 1 282 -30 1485 133 48 88 chr11 69946673 69947027 -80836526 - MER49 LTR ERV1 -583 340 1 343 275 13 54 chr11 69947128 69947204 -80836349 - MLT1I LTR MaLR -195 214 145 2310 95 10 0 chr11 69947204 69947500 -80836053 - AluSx SINE Alu -13 299 1 343 275 13 54 chr11 69947500 69947572 -80835981 - MLT1I LTR MaLR -264 145 72 359 276 58 18 chr11 69947871 69948051 -80835502 + L1ME LINE L1 5596 5778 -400 2323 91 0 22 chr11 69948773 69949092 -80834461 + AluSx SINE Alu 1 312 0 2175 118 68 21 chr11 69949108 69949491 -80834062 - MER84 LTR ERVI -106 401 1 282 246 105 44 chr11 69950109 69950223 -80833330 - L2 LINE L2 0 3313 3193 386 305 238 0 chr11 69950705 69951007 -80832546 + L2 LINE L2 2939 3312 -1 2210 118 3 6 chr11 69951111 69951424 -80832129 - AluSx SINE Alu 0 312 1 2405 98 0 9 chr11 69951524 69951839 -80831714 + AluSx SINE Alu 1 312 0 2445 77 0 10 chr11 69951839 69952162 -80831391 + AluY SINE Alu 1 311 0 24 32 0 0 chr11 69952693 69952724 -80830829 + AT_rich Low_complexity Low_complexity 1 31 0 2292 95 0 3 chr11 69952724 69953018 -80830535 + AluSp SINE Alu 21 313 0 1325 139 5 49 chr11 69953021 69953244 -80830309 + AluJb SINE Alu 86 298 -14 761 249 28 38 chr11 69953248 69953537 -80830016 + L1MC5 LINE L1 7311 7596 -365 246 150 25 0 chr11 69953602 69953642 -80829911 - MER57A LTR ERV1 -68 335 295 2257 71 0 46 chr11 69953728 69954051 -80829502 + AluY SINE Alu 1 308 -3 344 232 27 18 chr11 69954142 69954254 -80829299 - MER34B LTR ERV1 -183 382 270 2323 69 45 0 chr11 69954327 69954499 -80829054 - AluY SINE Alu -8 303 111 288 0 0 0 chr11 69954499 69954531 -80829022 + (TG)n Simple_repeat Simple_repeat 1 32 0 2323 69 45 0 chr11 69954531 69954648 -80828905 - AluY SINE Alu -200 111 1 286 234 0 13 chr11 69954776 69954853 -80828700 - MER34C LTR ERV1 -473 112 37 291 198 25 83 chr11 69954861 69954941 -80828612 + L1MC5 LINE L1 7800 7883 -78 2452 85 3 0 chr11 69954941 69955247 -80828306 - AluSp SINE Alu -6 307 1 291 198 25 83 chr11 69955247 69955259 -80828294 + L1MC5 LINE L1 7883 7894 -67 2260 115 3 16 chr11 69955259 69955573 -80827980 - AluSg SINE Alu 0 310 1 291 198 25 83 chr11 69955573 69955600 -80827953 + L1MC5 LINE L1 7894 7913 -48 652 56 0 122 chr11 69955747 69955803 -80827750 - MER4A LTR ERV1 0 664 625 2273 109 0 3 chr11 69955803 69956106 -80827447 + AluSg SINE Alu 1 302 -8 652 56 0 122 chr11 69956106 69956156 -80827397 - MER4A LTR ERV1 -39 625 571 * 1538 111 170 96 chr11 69956152 69956547 -80827006 - MER4A LTR ERV1 -240 424 1 2464 103 0 0 chr11 69956853 69957165 -80826388 - AluSx SINE Alu 0 312 1 448 306 0 38 chr11 69957165 69957313 -80826240 - MIR3 SINE MIR -53 155 12 636 261 101 40 chr11 69957369 69957586 -80825967 + MIR SINE MIR 19 245 -17 392 281 44 31 chr11 69957666 69957826 -80825727 - MIR3 SINE MIR -6 202 41 2248 87 10 13 chr11 69961537 69961837 -80821716 - AluSx SINE Alu -13 299 1 194 268 0 0 chr11 69962083 69962124 -80821429 + MIR SINE MIR 108 148 -60 305 339 90 34 chr11 69962129 69962306 -80821247 - L3 LINE CR1 -2 1575 1389 225 0 0 0 chr11 69962485 69962510 -80821043 + (TG)n Simple_repeat Simple_repeat 1 25 0 243 0 0 0 chr11 69963052 69963079 -80820474 + (TG)n Simple_repeat Simple_repeat 2 28 0 186 271 21 0 chr11 69963121 69963169 -80820384 - L2 LINE L2 -2 3311 3263 369 229 92 0 chr11 69963170 69963279 -80820274 + MIR SINE MIR 85 203 -59 2175 147 0 0 chr11 69964165 69964471 -80819082 + AluSq SINE Alu 1 306 -7 2319 87 7 3 chr11 69964888 69965186 -80818367 - AluSc SINE Alu -10 299 1 1928 111 0 15 chr11 69965732 69966003 -80817550 - AluSx SINE Alu -1 311 45 1015 194 156 28 chr11 69966009 69966062 -80817491 - MER2 DNA MER2_type -20 325 280 2441 79 0 10 chr11 69966062 69966367 -80817186 + AluSq SINE Alu 1 302 -11 1015 194 156 28 chr11 69966367 69966601 -80816952 - MER2 DNA MER2_type -65 280 1 2370 87 0 0 chr11 69966615 69966915 -80816638 + AluY SINE Alu 1 300 -11 316 363 20 20 chr11 69967089 69967235 -80816318 + MIR3 SINE MIR 1 146 -62 388 264 77 96 chr11 69970343 69970698 -80812855 + L1M4c LINE L1 949 1447 -1296 1903 143 10 3 chr11 69977463 69977757 -80805796 - AluSx SINE Alu -16 296 1 2441 85 10 0 chr11 69978595 69978901 -80804652 + AluSp SINE Alu 1 309 -4 2196 83 0 23 chr11 69978906 69979207 -80804346 + AluY SINE Alu 5 298 -13 648 144 0 0 chr11 69979677 69979774 -80803779 - FRAM SINE Alu -21 155 59 2177 132 3 0 chr11 69980250 69980560 -80802993 - AluSx SINE Alu -1 311 1 859 173 11 56 chr11 69980702 69980871 -80802682 - AluSg/x SINE Alu -15 295 133 1699 109 0 28 chr11 69980871 69981118 -80802435 - AluSg SINE Alu -15 295 56 2318 92 3 0 chr11 69981139 69981434 -80802119 - AluSp SINE Alu -17 296 1 2103 130 0 7 chr11 69981437 69981770 -80801783 - AluSx SINE Alu 0 312 1 2410 85 0 0 chr11 69982109 69982403 -80801150 - AluSx SINE Alu -15 297 4 261 137 0 20 chr11 69982415 69982466 -80801087 - L1ME LINE L1 -351 5815 5766 2188 112 7 13 chr11 69982484 69982619 -80800934 + AluSx SINE Alu 1 135 -177 308 89 89 0 chr11 69982619 69982675 -80800878 + L1PA8 LINE L1 6108 6168 -4 2188 112 7 13 chr11 69982675 69982844 -80800709 + AluSx SINE Alu 135 303 -9 1808 160 57 7 chr11 69982848 69983130 -80800423 + AluSx SINE Alu 1 296 -16 1693 163 59 7 chr11 69983138 69983427 -80800126 + AluSx SINE Alu 1 304 -8 728 152 27 0 chr11 69983427 69983539 -80800014 - AluJo/FLAM SINE Alu -186 116 2 1741 158 0 42 chr11 69983546 69983719 -80799834 - AluJb SINE Alu -14 298 142 1882 144 7 3 chr11 69983719 69984010 -80799543 - AluSp SINE Alu -21 292 1 1741 158 0 42 chr11 69984010 69984147 -80799406 - AluJb SINE Alu -170 142 1 236 174 19 181 chr11 69984148 69984202 -80799351 - L1ME LINE L1 -776 5370 5309 2117 111 47 0 chr11 69984202 69984500 -80799053 - AluSx SINE Alu 0 312 1 236 174 19 181 chr11 69984500 69984600 -80798953 - L1ME LINE L1 -837 5309 5241 2303 118 0 0 chr11 69984629 69984935 -80798618 - AluSx SINE Alu -6 306 1 387 149 21 21 chr11 69984945 69985039 -80798514 - L1ME LINE L1 -900 5246 5153 2478 58 3 10 chr11 69985110 69985418 -80798135 + AluY SINE Alu 1 306 -5 362 273 0 0 chr11 69985681 69985769 -80797784 - MIR SINE MIR -85 123 36 358 239 158 103 chr11 69985866 69985948 -80797605 + MIR SINE MIR 58 134 -128 550 223 15 31 chr11 69985948 69986078 -80797475 - FLAM_A SINE Alu -5 128 1 358 239 158 103 chr11 69986078 69986104 -80797449 + MIR SINE MIR 134 157 -105 2210 130 3 3 chr11 69986104 69986412 -80797141 + AluSx SINE Alu 1 308 -4 358 239 158 103 chr11 69986412 69986486 -80797067 + MIR SINE MIR 157 251 -11 2125 114 7 10 chr11 69986724 69987022 -80796531 - AluSx SINE Alu -15 297 1 632 292 16 39 chr11 69987282 69987539 -80796014 + MIR SINE MIR 12 262 0 195 42 0 0 chr11 69987613 69987637 -80795916 + (A)n Simple_repeat Simple_repeat 1 24 0 207 100 0 0 chr11 69987904 69987934 -80795619 + (CCCCCT)n Simple_repeat Simple_repeat 5 34 0 1791 120 11 4 chr11 69987954 69988221 -80795332 - AluSx SINE Alu -43 269 1 1681 199 62 11 chr11 69988350 69988707 -80794846 - LTR40b LTR ERVL 0 462 88 1646 139 27 36 chr11 69988710 69988847 -80794706 + AluSx SINE Alu 6 143 -169 2283 84 0 7 chr11 69988847 69989145 -80794408 + AluY SINE Alu 1 296 -15 1646 139 27 36 chr11 69989145 69989308 -80794245 + AluSx SINE Alu 143 303 -9 1334 180 64 32 chr11 69989326 69989609 -80793944 - AluJo SINE Alu -10 292 1 358 266 86 8 chr11 69989609 69989737 -80793816 - MIR SINE MIR -111 151 14 259 256 62 128 chr11 69989881 69989961 -80793592 - L2 LINE L2 -494 2820 2736 2081 96 3 0 chr11 69989961 69990243 -80793310 - AluSx SINE Alu -18 294 12 259 256 62 128 chr11 69990243 69990373 -80793180 - L2 LINE L2 -578 2736 2624 915 122 0 0 chr11 69990567 69990698 -80792855 + AluJb SINE Alu 1 131 -181 252 92 31 92 chr11 69994077 69994142 -80789411 + Alu SINE Alu 240 300 0 2294 77 0 3 chr11 69996156 69996454 -80787099 + AluSx SINE Alu 1 297 -15 465 151 92 56 chr11 69996454 69996580 -80786973 - MLT1A1 LTR MaLR -225 149 1 6351 212 59 21 chr11 69996580 69997533 -80786020 + L1MA2 LINE L1 3486 4534 -1612 1689 188 0 23 chr11 69997533 69997842 -80785711 + AluJb SINE Alu 1 302 -10 6351 212 59 21 chr11 69997842 69998583 -80784970 + L1MA2 LINE L1 4534 5245 -901 2594 75 67 5 chr11 69998608 69998982 -80784571 - MLT2A1 LTR ERVL -47 397 1 6567 115 6 8 chr11 69998990 70000035 -80783518 + L1MA2 LINE L1 5262 6304 0 1769 155 21 0 chr11 70000056 70000340 -80783213 + AluJo SINE Alu 1 290 -22 5777 171 29 35 chr11 70000351 70001299 -80782254 + L1MC1 LINE L1 4372 5323 -1010 1984 131 7 10 chr11 70001299 70001605 -80781948 + AluSx SINE Alu 7 311 -1 5777 171 29 35 chr11 70001605 70002513 -80781040 + L1MC1 LINE L1 5323 6234 -99 1822 210 134 11 chr11 70002513 70002952 -80780601 + LTR42 LTR ERVL 1 493 -2 5777 171 29 35 chr11 70002952 70004023 -80779530 + L1MC1 LINE L1 6234 6226 -107 1684 182 54 56 chr11 70004023 70004414 -80779139 + MLT1B LTR MaLR 1 390 0 5777 171 29 35 chr11 70004414 70004523 -80779030 + L1MC1 LINE L1 6225 6333 0 854 223 3 9 chr11 70004523 70004819 -80778734 - MLT1A1 LTR MaLR 0 365 1 1707 164 15 89 chr11 70004819 70005118 -80778435 + L1MB7 LINE L1 5737 6057 -127 180 0 0 0 chr11 70005118 70005138 -80778415 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1707 164 15 89 chr11 70005138 70005263 -80778290 + L1MB7 LINE L1 6057 6123 -61 773 203 0 0 chr11 70005263 70005386 -80778167 - FLAM_A SINE Alu -10 123 1 1707 164 15 89 chr11 70005386 70005441 -80778112 + L1MB7 LINE L1 6123 6181 -3 577 186 9 54 chr11 70005440 70005540 -80778013 + L1MD3 LINE L1 6845 6948 -873 * 1897 155 0 3 chr11 70005540 70005837 -80777716 - AluJb SINE Alu -16 296 1 577 186 9 54 chr11 70005837 70005953 -80777600 + L1MD3 LINE L1 6948 7075 -746 1212 193 0 9 chr11 70005954 70006167 -80777386 + AluJo SINE Alu 87 297 -15 2657 211 77 20 chr11 70006167 70006789 -80776764 + L1MC4a LINE L1 7059 7727 -81 7812 166 122 38 chr11 70006789 70008409 -80775144 - MER52A LTR ERV1 0 1755 1 2657 211 77 20 chr11 70008409 70008488 -80775065 + L1MC4a LINE L1 7727 7800 -8 672 210 19 13 chr11 70008515 70008672 -80774881 + MLT1A1 LTR MaLR 1 158 -207 2460 53 0 3 chr11 70008672 70008976 -80774577 + AluY SINE Alu 5 307 -4 687 262 63 67 chr11 70008993 70009016 -80774537 + L1ME LINE L1 4981 5003 -1167 2120 117 7 0 chr11 70009016 70009323 -80774230 + AluSx SINE Alu 1 309 -3 687 262 63 67 chr11 70009323 70009792 -80773761 + L1ME LINE L1 5003 5490 -680 725 251 142 5 chr11 70009816 70010035 -80773518 + L1ME LINE L1 4564 4812 -1334 426 158 37 12 chr11 70010106 70010188 -80773365 + FLAM_C SINE Alu 56 139 -4 669 194 76 81 chr11 70010204 70010415 -80773138 + L1ME LINE L1 5475 5684 -478 2143 103 3 0 chr11 70010415 70010706 -80772847 + AluSx SINE Alu 1 292 -20 1114 88 0 0 chr11 70016017 70016164 -80767389 - AluSg/x SINE Alu -16 294 148 195 129 0 0 chr11 70016782 70016813 -80766740 + (AGGGGG)n Simple_repeat Simple_repeat 2 32 0 216 186 29 57 chr11 70016838 70016908 -80766645 + CT-rich Low_complexity Low_complexity 1 68 0 212 167 71 0 chr11 70017656 70017698 -80765855 - L2 LINE L2 -213 3059 3015 1797 137 20 16 chr11 70019646 70019952 -80763601 - AluSx SINE Alu -5 307 1 2187 108 0 0 chr11 70020054 70020350 -80763203 + AluSx SINE Alu 3 298 -14 588 195 6 44 chr11 70020351 70020510 -80763043 - L1M4 LINE L1 -2208 3938 3786 2353 85 3 3 chr11 70020514 70020821 -80762732 - AluSp SINE Alu -6 307 1 1564 159 23 58 chr11 70020821 70021130 -80762423 - AluJo SINE Alu -9 303 6 1162 82 48 106 chr11 70021137 70021344 -80762209 - AluY SINE Alu -116 195 1 857 102 46 96 chr11 70021344 70021541 -80762012 - L1M4 LINE L1 -2441 3705 3519 446 153 24 24 chr11 70021541 70021559 -80761994 - MLT1D LTR MaLR -420 85 68 2082 121 3 0 chr11 70021559 70021856 -80761697 - AluSx SINE Alu -14 298 1 446 153 24 24 chr11 70021856 70021922 -80761631 - MLT1D LTR MaLR -436 69 1 255 185 31 0 chr11 70021969 70022034 -80761519 + A-rich Low_complexity Low_complexity 2 68 0 2305 78 7 0 chr11 70022094 70022401 -80761152 - AluSg SINE Alu 0 310 2 2183 78 9 44 chr11 70022748 70022925 -80760628 - AluSx SINE Alu 0 312 149 2467 47 0 7 chr11 70022925 70023226 -80760327 - AluY SINE Alu -12 299 1 2183 78 9 44 chr11 70023226 70023367 -80760186 - AluSx SINE Alu -163 149 5 1537 82 0 0 chr11 70023381 70023576 -80759977 - AluSx SINE Alu -21 289 95 4286 178 37 50 chr11 70023577 70024543 -80759010 - LTR13 LTR ERVK 0 954 1 3622 193 46 54 chr11 70024547 70025524 -80758029 + LTR5 LTR ERVK 1 969 0 729 120 0 0 chr11 70025526 70025626 -80757927 - AluSx SINE Alu -212 101 2 305 325 49 8 chr11 70025631 70025754 -80757799 - MIR SINE MIR -117 145 18 180 279 16 16 chr11 70026723 70026784 -80756769 + MIR SINE MIR 86 146 -62 246 291 48 19 chr11 70027970 70028073 -80755480 + MIR SINE MIR 72 177 -85 249 296 12 25 chr11 70028611 70028692 -80754861 + MIR SINE MIR 13 92 -116 1287 149 21 45 chr11 70028724 70028865 -80754688 + MER46A DNA MER2_type 1 135 -2596 2134 95 27 3 chr11 70028865 70029161 -80754392 + AluSx SINE Alu 1 303 -9 1287 149 21 45 chr11 70029161 70029261 -80754292 + MER46A DNA MER2_type 135 236 0 2120 105 6 16 chr11 70029568 70029883 -80753670 + AluSp SINE Alu 1 312 -1 2175 94 0 7 chr11 70029890 70030189 -80753364 + AluSp SINE Alu 7 303 -10 447 239 21 21 chr11 70030217 70030359 -80753194 - L2 LINE L2 -253 3060 2919 184 338 0 14 chr11 70030371 70030445 -80753108 + MIR SINE MIR 111 183 -79 212 217 67 0 chr11 70030867 70030927 -80752626 + MIR SINE MIR 61 124 -84 184 270 235 17 chr11 70031072 70031187 -80752366 + MIR SINE MIR 21 160 -102 683 260 93 5 chr11 70031210 70031414 -80752139 + MIR SINE MIR 35 256 -6 193 191 0 0 chr11 70031592 70031634 -80751919 + MIR SINE MIR 96 137 -71 317 278 0 33 chr11 70031864 70031954 -80751599 - MIR SINE MIR -164 98 12 2309 99 0 3 chr11 70033549 70033861 -80749692 + AluSx SINE Alu 1 311 -1 2028 120 3 3 chr11 70034547 70034846 -80748707 + AluSp SINE Alu 1 299 -14 1905 132 0 3 chr11 70034904 70035191 -80748362 + AluJb SINE Alu 1 286 -26 1991 99 0 51 chr11 70035208 70035356 -80748197 + AluSx SINE Alu 1 126 -186 2233 82 3 16 chr11 70035356 70035671 -80747882 + AluY SINE Alu 1 311 0 1991 99 0 51 chr11 70035671 70035834 -80747719 + AluSx SINE Alu 126 296 -16 1503 250 157 16 chr11 70035837 70036474 -80747079 - L2 LINE L2 -843 2471 1745 234 265 71 31 chr11 70036934 70037032 -80746521 - MIR SINE MIR -95 113 12 271 306 181 5 chr11 70037032 70037231 -80746322 - MER102b DNA MER1_type 0 341 108 296 293 207 40 chr11 70041969 70042317 -80741236 + L2 LINE L2 2847 3252 -20 2515 79 3 0 chr11 70042318 70042623 -80740930 - AluSg SINE Alu -4 306 1 293 222 14 14 chr11 70042676 70042748 -80740805 + MIR SINE MIR 169 240 -22 980 87 7 0 chr11 70042818 70042967 -80740586 + (TGGA)n Simple_repeat Simple_repeat 3 152 0 216 340 173 21 chr11 70045321 70045788 -80737765 + L2 LINE L2 2301 2838 -476 226 289 50 16 chr11 70045814 70045935 -80737618 + L2 LINE L2 2888 3012 -260 220 273 0 0 chr11 70046652 70046707 -80736846 + GA-rich Low_complexity Low_complexity 2 56 0 284 280 140 0 chr11 70049111 70049211 -80734342 + MIR SINE MIR 18 131 -131 886 122 0 38 chr11 70051600 70051853 -80731700 - AluJb SINE Alu -12 300 2 2406 80 7 3 chr11 70051863 70052164 -80731389 - AluY SINE Alu -9 302 1 211 276 265 0 chr11 70052529 70052627 -80730926 + L2 LINE L2 3129 3252 -20 272 311 68 8 chr11 70053201 70053333 -80730220 - MIR SINE MIR -41 221 82 2080 108 14 14 chr11 70053342 70053629 -80729924 - AluSx SINE Alu -25 287 1 1672 108 112 7 chr11 70055871 70056148 -80727405 - AluSc SINE Alu -3 306 1 1178 136 19 34 chr11 70056157 70056363 -80727190 - AluJb SINE Alu -5 307 105 249 143 0 0 chr11 70056366 70056401 -80727152 + AluSx SINE Alu 1 35 -268 604 109 0 0 chr11 70056404 70056496 -80727057 + L1MC3 LINE L1 7362 7453 -332 2048 95 78 28 chr11 70056496 70056550 -80727003 - MER51B LTR ERV1 0 377 327 2470 53 27 13 chr11 70056550 70056851 -80726702 + AluY SINE Alu 1 305 -6 2048 95 78 28 chr11 70056851 70057155 -80726398 - MER51B LTR ERV1 -50 327 1 1092 145 66 0 chr11 70057160 70057194 -80726359 + AluSx SINE Alu 1 31 -281 3168 86 117 16 chr11 70057194 70057272 -80726281 - MER41A LTR ERV1 0 554 485 2188 71 8 0 chr11 70057272 70057540 -80726013 + AluSx SINE Alu 31 300 -12 3168 86 117 16 chr11 70057540 70057964 -80725589 - MER41A LTR ERV1 -69 485 1 1092 145 66 0 chr11 70057964 70058095 -80725458 + AluSx SINE Alu 31 177 -135 434 153 0 24 chr11 70058097 70058168 -80725385 + AluS SINE Alu 226 296 -14 2047 120 58 0 chr11 70058168 70058459 -80725094 + AluSg SINE Alu 1 308 -2 434 153 0 24 chr11 70058459 70058472 -80725081 + AluS SINE Alu 296 308 -2 370 140 186 5 chr11 70058472 70058569 -80724984 - AluSg SINE Alu -203 97 1 1537 139 39 25 chr11 70058590 70058871 -80724682 + AluJo SINE Alu 10 294 -18 592 278 77 0 chr11 70059438 70059607 -80723946 + LTR16C LTR ERVL 88 269 -222 1077 201 67 71 chr11 70059682 70060118 -80723435 + MLT2B1 LTR ERVL 3 414 0 1456 160 0 13 chr11 70060133 70060364 -80723189 - AluJb SINE Alu -21 291 64 4794 65 12 5 chr11 70060365 70061007 -80722546 - LTR13 LTR ERVK 0 1007 361 3835 70 18 0 chr11 70061005 70061507 -80722046 - LTR13 LTR ERVK -496 511 1 * 452 149 0 0 chr11 70061507 70061574 -80721979 - AluS SINE Alu -245 67 1 313 320 184 55 chr11 70061642 70062130 -80721423 - L1ME4a LINE L1 -87 6034 5484 210 133 50 0 chr11 70062136 70062187 -80721366 + (TA)n Simple_repeat Simple_repeat 1 57 -6 1893 101 98 29 chr11 70062187 70062535 -80721018 - THE1C LTR MaLR -1 374 3 210 133 50 0 chr11 70062535 70062543 -80721010 + (TA)n Simple_repeat Simple_repeat 57 63 0 340 213 53 43 chr11 70062543 70062637 -80720916 - L1MC4 LINE L1 -1333 6709 6615 249 136 0 23 chr11 70062663 70062707 -80720846 - MER4D LTR ERV1 -70 802 760 418 208 13 0 chr11 70062707 70062784 -80720769 - AluJb SINE Alu -233 79 2 254 303 95 33 chr11 70062792 70063003 -80720550 - L1ME4a LINE L1 -2330 5478 5255 2327 75 3 3 chr11 70063112 70063418 -80720135 + AluY SINE Alu 1 306 0 22 0 0 0 chr11 70063506 70063528 -80720025 + AT_rich Low_complexity Low_complexity 1 22 0 2256 133 3 0 chr11 70063665 70063974 -80719579 + AluSx SINE Alu 1 310 -2 447 267 55 0 chr11 70064300 70064446 -80719107 + L1M4 LINE L1 2363 2516 -3630 3184 205 11 9 chr11 70064492 70065462 -80718091 - L1MB4 LINE L1 -51 6129 5474 2204 93 7 0 chr11 70064960 70065277 -80718276 - AluSg SINE Alu 0 319 1 748 317 15 33 chr11 70065277 70065506 -80718047 - L1PA6 LINE L1 -497 5657 5435 312 191 11 43 chr11 70065605 70065699 -80717854 + L1M4 LINE L1 4574 4664 -1482 1220 168 5 15 chr11 70065699 70065901 -80717652 + AluJo SINE Alu 13 212 -100 430 155 0 70 chr11 70065906 70066022 -80717531 + L1 LINE L1 3880 3988 -2158 2293 67 0 3 chr11 70066022 70066304 -80717249 + AluY SINE Alu 1 281 -30 430 155 0 70 chr11 70066304 70066316 -80717237 + L1 LINE L1 3988 3999 -2147 834 217 32 0 chr11 70066319 70066476 -80717077 + AluJo SINE Alu 127 288 -24 463 16 31 0 chr11 70066476 70066540 -80717013 + (CA)n Simple_repeat Simple_repeat 2 67 0 2072 147 0 0 chr11 70066547 70066854 -80716699 + AluSx SINE Alu 1 307 -5 654 233 15 68 chr11 70066999 70067158 -80716395 - L1M4 LINE L1 -1850 4296 4148 2213 106 0 7 chr11 70067158 70067481 -80716072 + AluSg SINE Alu 1 321 0 654 233 15 68 chr11 70067481 70067526 -80716027 - L1M4 LINE L1 -1998 4148 4102 1393 194 16 25 chr11 70067526 70067840 -80715713 + AluSp SINE Alu 1 311 -2 1126 103 6 46 chr11 70067840 70068014 -80715539 + AluSg/x SINE Alu 126 292 -18 784 188 27 0 chr11 70068014 70068163 -80715390 + MLT1A1 LTR MaLR 201 353 -12 511 158 0 12 chr11 70068239 70068321 -80715232 + AluJ/FLAM SINE Alu 2 82 -230 241 57 29 0 chr11 70068371 70068406 -80715147 - Alu SINE Alu -73 226 191 641 164 66 0 chr11 70068418 70068540 -80715013 + MLT2B2 LTR ERVL 386 515 0 2337 111 0 13 chr11 70068708 70069015 -80714538 + AluSx SINE Alu 1 303 -9 2605 74 0 0 chr11 70069053 70069364 -80714189 + AluY SINE Alu 1 311 0 1389 164 6 117 chr11 70069398 70069545 -80714008 + AluJo SINE Alu 7 101 -211 2279 74 0 51 chr11 70069545 70069901 -80713652 + AluY SINE Alu 1 341 0 1389 164 6 117 chr11 70069901 70070076 -80713477 + AluJo SINE Alu 101 294 -18 257 221 199 15 chr11 70070076 70070212 -80713341 + L1MC4a LINE L1 6014 6174 -1634 781 135 0 64 chr11 70070531 70070672 -80712881 + FLAM_C SINE Alu 1 132 -1 3485 155 23 54 chr11 70070689 70071100 -80712453 - L1MB3 LINE L1 0 6183 5761 180 0 0 0 chr11 70071100 70071120 -80712433 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2120 94 3 50 chr11 70071120 70071417 -80712136 - AluSx SINE Alu -29 283 1 3485 155 23 54 chr11 70071417 70071434 -80712119 - L1MB3 LINE L1 -421 5762 5746 2651 164 57 2 chr11 70071434 70071922 -80711631 - MLT2B2 LTR ERVL 0 515 1 3485 155 23 54 chr11 70071922 70072266 -80711287 - L1MB3 LINE L1 -437 5746 5433 2454 42 0 11 chr11 70072266 70072587 -80710966 - AluY SINE Alu 0 318 1 666 217 42 0 chr11 70072594 70072806 -80710747 - L1MB3 LINE L1 -867 5279 5059 238 172 47 0 chr11 70072880 70072944 -80710609 - L1MB3 LINE L1 -1093 5053 4987 2342 75 3 10 chr11 70072945 70073253 -80710300 - AluY SINE Alu -5 306 1 372 273 78 8 chr11 70073257 70073385 -80710168 + L1M4 LINE L1 4848 4984 -1162 2186 117 0 61 chr11 70073706 70073881 -80709672 - AluSx SINE Alu -6 306 122 247 25 50 0 chr11 70073881 70073921 -80709632 + (TTG)n Simple_repeat Simple_repeat 1 42 0 1650 97 101 35 chr11 70073921 70074178 -80709375 - AluSg SINE Alu -31 279 6 2186 117 0 61 chr11 70074178 70074327 -80709226 - AluSx SINE Alu -188 124 1 365 131 48 36 chr11 70074521 70074605 -80708948 - AluY SINE Alu -216 85 1 2438 66 10 0 chr11 70074630 70074931 -80708622 + AluY SINE Alu 1 304 -7 2399 83 0 3 chr11 70074942 70075243 -80708310 + AluY SINE Alu 1 300 -11 2163 120 0 63 chr11 70075247 70075397 -80708156 + AluSx SINE Alu 1 121 -191 1558 98 106 39 chr11 70075397 70075692 -80707861 + AluSg SINE Alu 8 319 0 2163 120 0 63 chr11 70075692 70075873 -80707680 + AluSx SINE Alu 121 312 0 372 273 78 8 chr11 70076187 70076315 -80707238 - L1MB3 LINE L1 -1162 4984 4848 2591 53 0 3 chr11 70076319 70076619 -80706934 + AluY SINE Alu 1 299 -12 735 230 0 68 chr11 70076781 70077003 -80706550 - AluSc SINE Alu -101 208 2 2241 122 0 3 chr11 70077079 70077375 -80706178 + AluSx SINE Alu 1 295 -17 1532 77 5 5 chr11 70077375 70077569 -80705984 + AluSp SINE Alu 108 301 -12 2177 108 7 13 chr11 70077570 70077877 -80705676 + AluY SINE Alu 1 305 -6 2184 125 0 0 chr11 70077997 70078294 -80705259 + AluSx SINE Alu 1 297 -15 604 186 18 0 chr11 70078299 70078412 -80705141 - FLAM_C SINE Alu -27 116 2 2250 75 14 3 chr11 70078623 70078948 -80704605 + AluSp SINE Alu 1 328 0 1269 223 43 37 chr11 70078949 70079165 -80704388 + L1M4 LINE L1 3919 4139 -2007 2222 105 0 17 chr11 70079165 70079488 -80704065 - AluSg SINE Alu 0 310 1 1269 223 43 37 chr11 70079488 70079647 -80703906 + L1M4 LINE L1 4139 4296 -1850 2072 147 0 0 chr11 70079792 70080099 -80703454 - AluSx SINE Alu -5 307 1 360 0 0 0 chr11 70080106 70080146 -80703407 + (TG)n Simple_repeat Simple_repeat 2 41 0 219 36 0 0 chr11 70080151 70080179 -80703374 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 416 117 0 0 chr11 70080179 70080239 -80703314 - AluS SINE Alu -248 61 2 360 0 0 0 chr11 70080247 70080287 -80703266 + (TG)n Simple_repeat Simple_repeat 2 41 0 897 183 35 0 chr11 70080292 70080466 -80703087 - FRAM SINE Alu 0 177 1 189 0 0 0 chr11 70080466 70080487 -80703066 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2104 117 7 0 chr11 70080487 70080770 -80702783 - AluSp SINE Alu -28 285 1 472 165 278 8 chr11 70080832 70080965 -80702588 + MLT1A1 LTR MaLR 40 208 -157 2236 123 7 0 chr11 70080968 70081277 -80702276 + AluSp SINE Alu 1 311 -2 1126 103 6 46 chr11 70081277 70081451 -80702102 + AluSg/x SINE Alu 126 292 -18 784 188 27 0 chr11 70081451 70081600 -80701953 + MLT1A1 LTR MaLR 201 353 -12 511 158 0 12 chr11 70081676 70081758 -80701795 + AluJ/FLAM SINE Alu 2 82 -230 241 57 29 0 chr11 70081808 70081843 -80701710 - Alu SINE Alu -73 226 191 641 164 66 0 chr11 70081855 70081977 -80701576 + MLT2B2 LTR ERVL 386 515 0 2337 111 0 13 chr11 70082145 70082452 -80701101 + AluSx SINE Alu 1 303 -9 2586 77 0 0 chr11 70082490 70082801 -80700752 + AluY SINE Alu 1 311 0 1389 164 6 117 chr11 70082836 70082983 -80700570 + AluJo SINE Alu 7 101 -211 2281 68 3 51 chr11 70082983 70083334 -80700219 + AluY SINE Alu 1 337 0 1389 164 6 117 chr11 70083334 70083509 -80700044 + AluJo SINE Alu 101 294 -18 316 217 181 14 chr11 70083509 70083647 -80699906 + L1MC4a LINE L1 6014 6174 -1634 781 135 0 64 chr11 70083966 70084107 -80699446 + FLAM_C SINE Alu 1 132 -1 3479 155 23 55 chr11 70084124 70084535 -80699018 - L1MB3 LINE L1 0 6183 5760 180 0 0 0 chr11 70084535 70084555 -80698998 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2120 94 3 50 chr11 70084555 70084852 -80698701 - AluSx SINE Alu -29 283 1 3479 155 23 55 chr11 70084852 70084870 -80698683 - L1MB3 LINE L1 -422 5761 5744 2651 164 57 2 chr11 70084870 70085358 -80698195 - MLT2B2 LTR ERVL 0 515 1 3479 155 23 55 chr11 70085358 70085702 -80697851 - L1MB3 LINE L1 -439 5744 5433 2344 50 7 11 chr11 70085702 70086021 -80697532 - AluY SINE Alu 0 318 1 1757 181 18 117 chr11 70086023 70086379 -80697174 - L1MB3 LINE L1 -860 5286 4896 2542 62 0 10 chr11 70086379 70086687 -80696866 - AluY SINE Alu -6 305 1 1770 139 33 53 chr11 70086691 70086993 -80696560 - AluJo SINE Alu -16 296 1 1757 181 18 117 chr11 70086993 70087215 -80696338 - L1MB3 LINE L1 -1253 4893 4818 2078 94 72 0 chr11 70087215 70087491 -80696062 - AluSp SINE Alu -17 296 1 1757 181 18 117 chr11 70087491 70087691 -80695862 - L1MB3 LINE L1 -1328 4818 4600 1761 130 95 11 chr11 70087746 70088031 -80695522 + AluSg1 SINE Alu 1 309 0 908 224 22 76 chr11 70088038 70088113 -80695440 + L1MC5 LINE L1 6542 6620 -1207 2190 95 0 20 chr11 70088113 70088409 -80695144 + AluSc SINE Alu 1 290 -19 1754 167 3 24 chr11 70088419 70088713 -80694840 + AluJo SINE Alu 1 288 -24 2534 79 3 0 chr11 70088718 70089023 -80694530 + AluSp SINE Alu 1 306 -7 908 224 22 76 chr11 70089023 70089206 -80694347 + L1MC5 LINE L1 6633 6798 -1029 2440 97 7 0 chr11 70089206 70089515 -80694038 + AluSp SINE Alu 1 311 -2 908 224 22 76 chr11 70089515 70089558 -80693995 + L1MC5 LINE L1 6798 6842 -985 676 170 0 52 chr11 70089562 70089697 -80693856 - FLAM_C SINE Alu -5 138 11 435 184 7 151 chr11 70089707 70089859 -80693694 + L1MC5 LINE L1 6839 6968 -993 1626 166 17 24 chr11 70089859 70090149 -80693404 + AluJo SINE Alu 1 288 -24 358 197 0 0 chr11 70090162 70090228 -80693325 + FRAM/FAM SINE Alu 1 61 -105 1020 199 42 12 chr11 70090272 70090513 -80693040 - MER87 LTR ERV1 -83 458 211 330 275 90 28 chr11 70090591 70090627 -80692926 + L1ME3 LINE L1 5714 5746 -416 2050 113 13 7 chr11 70090627 70090758 -80692795 + AluSq SINE Alu 1 130 -183 2041 112 37 3 chr11 70090758 70091053 -80692500 + AluSq SINE Alu 1 305 -8 2050 113 13 7 chr11 70091053 70091221 -80692332 + AluSq SINE Alu 130 302 -11 330 275 90 28 chr11 70091221 70091395 -80692158 + L1ME3 LINE L1 5746 5937 -225 2158 88 17 7 chr11 70091397 70091694 -80691859 + AluSx SINE Alu 1 300 -12 827 90 38 45 chr11 70091776 70091894 -80691659 + FLAM_C SINE Alu 1 119 -193 183 42 0 0 chr11 70091894 70091918 -80691635 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 827 90 38 45 chr11 70091918 70091932 -80691621 + FLAM_C SINE Alu 119 132 -180 1837 143 3 3 chr11 70091936 70092236 -80691317 + AluJb SINE Alu 1 300 -12 324 0 0 0 chr11 70092238 70092274 -80691279 + (CAATA)n Simple_repeat Simple_repeat 2 37 0 448 293 115 59 chr11 70095194 70095248 -80688305 - L2 LINE L2 -100 3213 3163 1540 173 46 33 chr11 70095248 70095509 -80688044 + AluJo SINE Alu 1 268 -44 2354 84 3 3 chr11 70095509 70095819 -80687734 - AluY SINE Alu -1 310 1 1540 173 46 33 chr11 70095819 70095864 -80687689 + AluJo SINE Alu 268 311 -1 448 293 115 59 chr11 70095864 70096266 -80687287 - L2 LINE L2 -150 3163 2714 276 257 129 0 chr11 70096541 70096642 -80686911 - MIR3 SINE MIR -23 185 72 318 299 103 0 chr11 70097474 70097581 -80685972 + L2 LINE L2 3188 3305 -8 318 313 192 5 chr11 70098438 70098636 -80684917 - MIR SINE MIR 0 262 28 460 310 54 46 chr11 70098696 70098957 -80684596 - L2 LINE L2 -25 3247 2985 270 319 116 0 chr11 70099080 70099218 -80684335 - L2 LINE L2 -567 2747 2594 600 340 133 16 chr11 70099252 70099511 -80684042 + L2 LINE L2 2834 3061 -252 2280 70 0 16 chr11 70099511 70099824 -80683729 - AluSc SINE Alu -1 308 1 600 340 133 16 chr11 70099824 70099991 -80683562 + L2 LINE L2 3061 3310 -3 453 274 73 37 chr11 70100896 70101060 -80682493 + MER5A DNA MER1_type 20 189 0 202 208 129 40 chr11 70101223 70101324 -80682229 + MIR3 SINE MIR 70 179 -29 186 330 78 0 chr11 70101349 70101452 -80682101 - L2 LINE L2 -208 3064 2954 262 230 9 9 chr11 70101670 70101783 -80681770 + (CCCCAG)n Simple_repeat Simple_repeat 6 118 0 196 299 78 0 chr11 70101843 70101920 -80681633 + L3 LINE CR1 871 953 -624 378 310 153 43 chr11 70104175 70104639 -80678914 + L2 LINE L2 2174 2688 -626 334 297 137 6 chr11 70104766 70104948 -80678605 + L2 LINE L2 2856 3061 -211 461 235 188 0 chr11 70107442 70107591 -80675962 + MIR SINE MIR 39 215 -47 907 172 180 19 chr11 70107658 70107689 -80675864 + MER58B DNA MER1_type 45 70 -2350 2202 95 7 10 chr11 70107689 70107993 -80675560 - AluSq SINE Alu -10 303 1 907 172 180 19 chr11 70107993 70108217 -80675336 + MER58B DNA MER1_type 70 341 0 2146 103 0 3 chr11 70108376 70108676 -80674877 + AluSq SINE Alu 5 303 -10 209 182 18 0 chr11 70108677 70108732 -80674821 + GA-rich Low_complexity Low_complexity 1 56 0 21 36 0 0 chr11 70109704 70109732 -80673821 + GC_rich Low_complexity Low_complexity 1 28 0 263 285 131 23 chr11 70112496 70112626 -80670927 + L2 LINE L2 2561 2704 -610 381 334 130 23 chr11 70112678 70113070 -80670483 + L2 LINE L2 2837 3270 -2 190 192 167 26 chr11 70113277 70113298 -80670255 + MER5A DNA MER1_type 55 72 -117 2114 103 0 3 chr11 70113298 70113611 -80669942 + AluSg SINE Alu 1 312 0 190 192 167 26 chr11 70113611 70113666 -80669887 + MER5A DNA MER1_type 72 143 -46 * 401 139 139 0 chr11 70113619 70113705 -80669848 - MER5A DNA MER1_type -84 105 8 239 305 124 9 chr11 70116490 70116595 -80666958 - MIR SINE MIR -62 146 30 209 232 30 131 chr11 70117026 70117070 -80666483 + MIR SINE MIR 105 135 -127 2225 93 7 0 chr11 70117070 70117370 -80666183 + AluSx SINE Alu 1 302 -10 209 232 30 131 chr11 70117370 70117424 -80666129 + MIR SINE MIR 135 193 -69 201 243 27 14 chr11 70118301 70118375 -80665178 + (CCG)n Simple_repeat Simple_repeat 1 75 0 258 335 146 5 chr11 70118620 70118805 -80664748 - MIR SINE MIR -14 248 38 213 94 0 0 chr11 70119074 70119106 -80664447 + (A)n Simple_repeat Simple_repeat 1 32 0 201 147 0 0 chr11 70119646 70119680 -80663873 + (CTGGGG)n Simple_repeat Simple_repeat 1 34 0 192 328 0 0 chr11 70121534 70121595 -80661958 + MIR SINE MIR 86 146 -62 2025 141 3 0 chr11 70123385 70123689 -80659864 + AluJb SINE Alu 1 305 -7 2134 114 7 7 chr11 70124753 70125051 -80658502 - AluSx SINE Alu -14 298 1 222 266 168 35 chr11 70125251 70125364 -80658189 + MIR SINE MIR 16 143 -119 325 250 30 0 chr11 70126506 70126606 -80656947 - MIR SINE MIR -55 153 51 292 321 22 15 chr11 70127156 70127290 -80656263 - MIR3 SINE MIR -47 161 27 378 282 7 87 chr11 70128037 70128186 -80655367 - MIR SINE MIR -72 190 54 371 312 64 7 chr11 70128570 70128711 -80654842 + MIR SINE MIR 34 182 -80 266 346 118 0 chr11 70129222 70129349 -80654204 + MIR3 SINE MIR 30 171 -37 249 319 133 15 chr11 70132514 70132649 -80650904 + MIR3 SINE MIR 27 177 -31 189 365 70 26 chr11 70133286 70133442 -80650111 + MIR3 SINE MIR 19 181 -27 2210 61 7 27 chr11 70133499 70133793 -80649760 + AluY SINE Alu 1 288 -23 185 343 10 30 chr11 70134426 70134525 -80649028 + L2 LINE L2 2945 3041 -231 215 301 58 0 chr11 70134654 70134757 -80648796 - L2 LINE L2 -2 3270 3162 254 337 22 0 chr11 70134960 70135052 -80648501 + MER94 DNA DNA 15 108 -26 190 319 28 28 chr11 70136262 70136334 -80647219 + MIR SINE MIR 113 184 -78 2313 78 3 0 chr11 70141382 70141690 -80641863 + AluSg SINE Alu 1 309 -1 276 324 21 49 chr11 70143755 70143897 -80639656 + MIR3 SINE MIR 18 155 -53 290 275 0 0 chr11 70145524 70145593 -80637960 + MIR SINE MIR 85 153 -55 224 398 31 0 chr11 70145906 70146034 -80637519 - MIR SINE MIR -4 258 127 300 169 0 67 chr11 70146512 70146601 -80636952 + L2 LINE L2 3025 3107 -165 355 337 126 0 chr11 70147264 70147437 -80636116 + MIR SINE MIR 21 224 -38 2208 95 26 0 chr11 70147437 70147742 -80635811 + AluSp SINE Alu 1 313 0 355 337 126 0 chr11 70147742 70147767 -80635786 + MIR SINE MIR 224 244 -18 425 253 162 20 chr11 70149848 70150046 -80633507 - MIR SINE MIR -28 234 9 428 208 176 0 chr11 70151166 70151291 -80632262 - MIR SINE MIR -95 167 21 402 273 73 33 chr11 70151686 70151836 -80631717 - MIR SINE MIR -86 176 21 1650 179 41 0 chr11 70153206 70153497 -80630056 - AluJb SINE Alu -9 303 1 1890 124 17 13 chr11 70153508 70153671 -80629882 - AluSx SINE Alu -13 299 133 2122 125 0 0 chr11 70153671 70153966 -80629587 - AluSx SINE Alu -17 295 1 1890 124 17 13 chr11 70153966 70154100 -80629453 - AluSx SINE Alu -179 133 1 2376 63 0 7 chr11 70154108 70154408 -80629145 - AluSc SINE Alu -11 298 1 199 280 75 32 chr11 70154445 70154538 -80629015 + MIR SINE MIR 101 197 -65 2325 80 0 0 chr11 70154555 70154855 -80628698 - AluY SINE Alu -11 300 1 265 312 48 24 chr11 70154994 70155119 -80628434 - L2 LINE L2 -213 3059 2932 249 340 48 0 chr11 70155791 70155894 -80627659 + MIR SINE MIR 13 120 -142 327 240 73 0 chr11 70155951 70156047 -80627506 + MIR SINE MIR 46 148 -114 631 174 94 29 chr11 70156971 70157109 -80626444 + AluJb SINE Alu 123 269 -43 714 246 60 9 chr11 70157145 70157360 -80626193 - MIR SINE MIR -25 237 12 220 229 0 0 chr11 70157415 70157463 -80626090 - MIR SINE MIR -64 144 97 2203 97 3 0 chr11 70158556 70158854 -80624699 + AluSx SINE Alu 4 302 -10 377 156 0 0 chr11 70158860 70158924 -80624629 + AluS SINE Alu 1 64 -237 2314 70 0 3 chr11 70159038 70159340 -80624213 - AluY SINE Alu -10 301 1 2387 66 3 0 chr11 70159351 70159654 -80623899 - AluY SINE Alu -7 304 1 2270 81 13 10 chr11 70159679 70159989 -80623564 + AluY SINE Alu 1 311 0 180 111 0 0 chr11 70159994 70160021 -80623532 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2669 119 2 53 chr11 70160061 70160497 -80623056 - LTR36 LTR ERV1 0 611 198 1637 122 7 56 chr11 70160477 70160780 -80622773 - LTR36 LTR ERV1 -323 288 1 * 568 360 32 62 chr11 70160826 70161262 -80622291 - LTR36-int LTR ERV1 -79 7043 6621 357 184 40 0 chr11 70161281 70161357 -80622196 - MER49 LTR ERV1 -163 760 682 762 116 67 79 chr11 70161369 70161487 -80622066 - LTR36-int LTR ERV1 -181 6150 6033 2065 103 0 33 chr11 70161487 70161787 -80621766 + AluSg SINE Alu 1 290 -20 762 116 67 79 chr11 70161787 70161832 -80621721 - LTR36-int LTR ERV1 -298 6033 5989 260 171 77 120 chr11 70161856 70161973 -80621580 - LTR36-int LTR ERV1 -306 6025 5914 1308 169 14 21 chr11 70161986 70162166 -80621387 - LTR36-int LTR ERV1 -562 5769 5590 2008 131 0 3 chr11 70162166 70162464 -80621089 - AluSx SINE Alu -15 297 1 1308 169 14 21 chr11 70162464 70162573 -80620980 - LTR36-int LTR ERV1 -741 5590 5482 12126 108 52 71 chr11 70162579 70162886 -80620667 + MER66A-int LTR ERV1 4548 4859 -1817 2156 123 0 0 chr11 70162886 70163187 -80620366 - AluSx SINE Alu -11 301 1 12126 108 52 71 chr11 70163187 70163219 -80620334 + MER66A-int LTR ERV1 4859 4890 -1786 408 134 0 85 chr11 70163219 70163301 -80620252 + AluS SINE Alu 226 300 -10 12126 108 52 71 chr11 70163301 70164013 -80619540 + MER66A-int LTR ERV1 4890 5614 -1062 2160 82 7 26 chr11 70164013 70164318 -80619235 + AluSg SINE Alu 1 299 -11 12126 108 52 71 chr11 70164318 70164759 -80618794 + MER66A-int LTR ERV1 5614 6062 -614 2445 56 0 3 chr11 70164759 70165062 -80618491 + AluY SINE Alu 1 302 -9 12126 108 52 71 chr11 70165062 70165716 -80617837 + MER66A-int LTR ERV1 6062 6676 0 2536 181 51 0 chr11 70165716 70166168 -80617385 + MER66A LTR ERV1 1 475 -3 1402 185 32 32 chr11 70166177 70166518 -80617035 - LTR36-int LTR ERV1 -1912 4351 4011 1174 170 42 0 chr11 70166523 70166735 -80616818 - AluJb SINE Alu -7 305 85 701 103 17 75 chr11 70166736 70166834 -80616719 - LTR36-int LTR ERV1 -1518 3362 3277 2320 88 0 3 chr11 70166834 70167139 -80616414 - AluSq SINE Alu -9 304 1 701 103 17 75 chr11 70167139 70167214 -80616339 - LTR36-int LTR ERV1 -1603 3277 3199 2092 136 0 0 chr11 70167216 70167526 -80616027 + AluSx SINE Alu 1 310 -2 3459 166 13 40 chr11 70167548 70167878 -80615675 - LTR36-int LTR ERV1 -2594 2286 1982 2537 52 3 0 chr11 70167878 70168187 -80615366 - AluY SINE Alu -1 310 1 3459 166 13 40 chr11 70168187 70168526 -80615027 - LTR36-int LTR ERV1 -2898 1982 1635 575 140 11 0 chr11 70168516 70168609 -80614944 - LTR38-int LTR ERV1 -2530 4068 3975 * 1601 180 0 17 chr11 70168634 70168790 -80614763 - AluJo SINE Alu -23 289 139 2132 111 0 3 chr11 70168790 70169088 -80614465 - AluSx SINE Alu -15 297 1 1601 180 0 17 chr11 70169088 70169225 -80614328 - AluJo SINE Alu -173 139 1 25 31 0 0 chr11 70169389 70169421 -80614132 + AT_rich Low_complexity Low_complexity 1 32 0 2434 78 0 0 chr11 70169421 70169730 -80613823 - AluSc SINE Alu 0 309 1 2209 158 31 12 chr11 70169730 70170200 -80613353 - LTR38-int LTR ERV1 -2985 3691 1196 1310 171 146 48 chr11 70170194 70170339 -80613214 - LTR38-int LTR ERV1 -467 1319 1190 * 2167 109 3 0 chr11 70170339 70170643 -80612910 + AluSg SINE Alu 1 305 -5 1310 171 146 48 chr11 70170643 70170853 -80612700 - LTR38-int LTR ERV1 -596 1190 929 2399 87 3 0 chr11 70171334 70171644 -80611909 + AluSx SINE Alu 1 311 -1 3103 115 61 130 chr11 70172363 70173017 -80610536 - LTR36 LTR ERV1 0 611 3 928 181 12 0 chr11 70173044 70173210 -80610343 + AluJb SINE Alu 136 303 -9 2261 100 0 0 chr11 70173328 70173638 -80609915 - AluSx SINE Alu -2 310 1 1734 163 14 0 chr11 70173914 70174209 -80609344 + 7SLRNA srpRNA srpRNA 10 308 -12 489 269 30 113 chr11 70174360 70174448 -80609105 - MIR SINE MIR 0 262 168 1424 181 41 24 chr11 70174448 70174740 -80608813 + AluJo SINE Alu 1 297 -15 489 269 30 113 chr11 70174740 70174919 -80608634 - MIR SINE MIR -94 168 19 216 0 0 0 chr11 70174927 70174951 -80608602 + (A)n Simple_repeat Simple_repeat 1 24 0 1431 134 0 9 chr11 70174988 70175205 -80608348 - AluJo SINE Alu -97 215 1 242 369 14 14 chr11 70175391 70175532 -80608021 - L3 LINE CR1 -179 1398 1258 243 254 237 9 chr11 70175538 70175652 -80607901 - L2 LINE L2 -2 3311 3172 2337 66 10 0 chr11 70176090 70176395 -80607158 - AluY SINE Alu -3 308 1 606 68 0 0 chr11 70176613 70176701 -80606852 + (CA)n Simple_repeat Simple_repeat 1 88 0 1738 179 3 0 chr11 70176806 70177108 -80606445 + AluJb SINE Alu 1 303 -9 2659 254 58 44 chr11 70177301 70177935 -80605618 - MER66A-int LTR ERV1 -5741 935 247 2112 122 0 0 chr11 70177935 70178230 -80605323 - AluSx SINE Alu -17 295 1 2659 254 58 44 chr11 70178230 70178479 -80605074 - MER66A-int LTR ERV1 -6429 247 3 1311 189 62 92 chr11 70178597 70179032 -80604521 - MER66A LTR ERV1 0 478 97 704 186 0 0 chr11 70179072 70179228 -80604325 - L1 LINE L1 -1593 4553 4398 243 0 0 0 chr11 70179228 70179255 -80604298 + (T)n Simple_repeat Simple_repeat 1 27 0 2161 111 0 0 chr11 70179749 70180047 -80603506 - AluSx SINE Alu -14 298 1 738 108 29 0 chr11 70180093 70180195 -80603358 - AluSq/x SINE Alu -207 106 2 571 162 19 0 chr11 70180296 70180401 -80603152 - L1MD1 LINE L1 -247 5995 5889 667 120 0 0 chr11 70180408 70180508 -80603045 - AluY SINE Alu 0 311 212 2065 196 35 35 chr11 70180516 70180794 -80602759 - L1MD1 LINE L1 -348 5894 5614 1850 124 34 10 chr11 70180794 70181085 -80602468 + AluSx SINE Alu 1 298 -14 2065 196 35 35 chr11 70181085 70181265 -80602288 - L1MD1 LINE L1 -627 5615 5436 5579 68 35 21 chr11 70181402 70182246 -80601307 - SVA Other Other -530 856 1 1869 132 42 0 chr11 70182353 70182641 -80600912 - AluSx SINE Alu -12 300 1 4125 161 40 10 chr11 70182641 70183336 -80600217 - MER66-int LTR ERV1 -356 6320 5605 189 0 0 0 chr11 70183407 70183428 -80600125 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6353 111 15 46 chr11 70184960 70185999 -80597554 - MER66-int LTR ERV1 -1062 5614 4608 2335 78 0 0 chr11 70186002 70186310 -80597243 + AluY SINE Alu 1 308 -3 1211 86 5 48 chr11 70186310 70186496 -80597057 + AluSg/x SINE Alu 132 309 -1 1903 127 3 39 chr11 70186496 70186826 -80596727 + MER83B-int LTR ERV1 1969 2286 -2594 2099 126 3 0 chr11 70186848 70187157 -80596396 - AluSx SINE Alu -2 310 1 647 186 18 0 chr11 70187368 70187481 -80596072 + FLAM_C SINE Alu 2 116 -27 2060 125 0 0 chr11 70187486 70187783 -80595770 - AluSx SINE Alu -15 297 1 2034 111 7 13 chr11 70187903 70188210 -80595343 - AluY SINE Alu -6 305 1 1445 77 5 5 chr11 70188211 70188405 -80595148 - AluSp SINE Alu -12 301 108 2123 118 0 3 chr11 70188405 70188701 -80594852 - AluSx SINE Alu -17 295 1 838 225 0 68 chr11 70188777 70188999 -80594554 + AluSc SINE Alu 2 208 -101 227 107 18 54 chr11 70189233 70189289 -80594264 + (GA)n Simple_repeat Simple_repeat 2 55 0 724 75 40 23 chr11 70189289 70189462 -80594091 + GA-rich Low_complexity Low_complexity 1 176 0 2027 102 0 3 chr11 70189787 70190091 -80593462 - AluSx SINE Alu 0 303 1 1464 182 3 75 chr11 70190093 70190412 -80593141 - AluJo SINE Alu -16 296 1 497 222 148 0 chr11 70190505 70190640 -80592913 + L1 LINE L1 4207 4361 -1785 1549 154 19 32 chr11 70190642 70190953 -80592600 - AluSp SINE Alu -6 307 1 2239 104 0 0 chr11 70191055 70191353 -80592200 + AluSx SINE Alu 3 300 -12 191 265 112 88 chr11 70192655 70192825 -80590728 + L2 LINE L2 2812 2985 -287 656 265 88 19 chr11 70192954 70193169 -80590384 + MIR SINE MIR 32 261 -1 1638 152 47 44 chr11 70193406 70193702 -80589851 - AluJb SINE Alu -15 297 1 1622 191 10 45 chr11 70193705 70193922 -80589631 - L1M4 LINE L1 -1144 5002 4806 1968 97 72 0 chr11 70193922 70194200 -80589353 - AluSp SINE Alu -15 298 1 1622 191 10 45 chr11 70194200 70194400 -80589153 - L1M4 LINE L1 -1340 4806 4600 1774 130 88 0 chr11 70194455 70194739 -80588814 + AluSg1 SINE Alu 1 309 0 2151 84 0 20 chr11 70194821 70195117 -80588436 + AluSc SINE Alu 1 290 -19 1669 167 3 24 chr11 70195127 70195421 -80588132 + AluJo SINE Alu 1 288 -24 2303 82 3 0 chr11 70195426 70195718 -80587835 + AluSp SINE Alu 1 293 -20 1027 84 0 0 chr11 70195820 70195951 -80587602 - AluSc SINE Alu -178 131 1 207 0 0 0 chr11 70195991 70196014 -80587539 + (A)n Simple_repeat Simple_repeat 1 23 0 2421 63 0 22 chr11 70196416 70196734 -80586819 + AluY SINE Alu 1 311 0 2344 81 3 0 chr11 70196832 70197140 -80586413 + AluSc SINE Alu 1 309 0 266 136 0 0 chr11 70197140 70197184 -80586369 - U7 snRNA snRNA -18 45 2 2104 98 3 10 chr11 70199466 70199762 -80583791 - AluSp SINE Alu -19 294 1 607 194 76 81 chr11 70199762 70199973 -80583580 - L1ME LINE L1 -478 5684 5475 312 171 40 26 chr11 70199996 70200072 -80583481 - FLAM_A SINE Alu -2 131 55 625 265 142 5 chr11 70200142 70200361 -80583192 - L1ME LINE L1 -1334 4812 4564 351 267 27 40 chr11 70200386 70200536 -80583017 - L1ME LINE L1 -673 5489 5342 190 111 0 44 chr11 70205665 70205710 -80577843 + (TG)n Simple_repeat Simple_repeat 1 43 0 183 146 0 49 chr11 70207113 70207154 -80576399 - MIR SINE MIR -88 120 82 370 357 117 9 chr11 70207787 70208000 -80575553 - MIR SINE MIR -21 241 6 2026 102 0 17 chr11 70209228 70209522 -80574031 - AluSq SINE Alu -24 289 1 21 57 0 0 chr11 70209528 70209563 -80573990 + AT_rich Low_complexity Low_complexity 1 35 0 1556 198 0 19 chr11 70209667 70209804 -80573749 + AluJo SINE Alu 1 139 -173 2158 114 0 0 chr11 70209804 70210101 -80573452 + AluSx SINE Alu 1 297 -15 1556 198 0 19 chr11 70210101 70210271 -80573282 + AluJo SINE Alu 139 302 -10 359 231 173 29 chr11 70210350 70210523 -80573030 + MIR3 SINE MIR 8 205 -3 2170 97 3 13 chr11 70210527 70210827 -80572726 - AluSq SINE Alu -16 297 1 1683 104 37 24 chr11 70210984 70211281 -80572272 - AluY SINE Alu -2 309 9 180 0 0 0 chr11 70211281 70211301 -80572252 + (CCTG)n Simple_repeat Simple_repeat 2 21 0 249 108 0 0 chr11 70211301 70211338 -80572215 + (TTCC)n Simple_repeat Simple_repeat 2 38 0 2289 112 0 3 chr11 70211343 70211657 -80571896 - AluSp SINE Alu 0 313 1 398 313 90 30 chr11 70212679 70212880 -80570673 + MIR SINE MIR 31 243 -19 284 353 53 37 chr11 70213010 70213197 -80570356 + L2 LINE L2 3082 3271 -1 738 296 71 5 chr11 70213229 70213471 -80570082 + MIR SINE MIR 7 262 0 2266 92 7 0 chr11 70213535 70213841 -80569712 - AluSx SINE Alu -4 308 1 2062 107 0 17 chr11 70213865 70214205 -80569348 - AluY SINE Alu 0 311 1 753 100 42 0 chr11 70214759 70214879 -80568674 + AluSg/x SINE Alu 180 304 -6 323 246 50 19 chr11 70215024 70215149 -80568404 + MIR SINE MIR 55 182 -61 195 260 82 0 chr11 70215557 70215630 -80567923 - MIR SINE MIR -72 136 58 231 111 0 0 chr11 70216009 70216045 -80567508 + MIR SINE MIR 113 148 -114 1184 129 73 13 chr11 70216109 70216341 -80567212 + L1MB7 LINE L1 5938 6183 -1 2240 71 10 7 chr11 70216405 70216714 -80566839 + AluY SINE Alu 1 310 -1 493 300 138 16 chr11 70216730 70217190 -80566363 - L2 LINE L2 -100 3213 2693 405 307 78 0 chr11 70217195 70217387 -80566166 + L2 LINE L2 2814 3020 -293 818 150 100 56 chr11 70217791 70217951 -80565602 + FRAM SINE Alu 1 163 -13 396 286 0 0 chr11 70217955 70218060 -80565493 + Charlie8 DNA MER1_type 85 189 -2228 466 198 0 0 chr11 70218242 70218328 -80565225 - L2 LINE L2 0 3313 3228 257 188 116 0 chr11 70218521 70218590 -80564963 + L2 LINE L2 3236 3312 -1 180 200 0 0 chr11 70218658 70218693 -80564860 + L2 LINE L2 3229 3263 -9 723 258 102 9 chr11 70220749 70220974 -80562579 + MIR SINE MIR 1 246 -16 212 250 191 0 chr11 70221859 70221927 -80561626 - MIR SINE MIR -93 115 35 275 219 0 2 chr11 70221993 70222053 -80561500 + MIR SINE MIR 93 145 -63 210 351 13 0 chr11 70222103 70222180 -80561373 + MIR SINE MIR 58 135 -73 418 248 53 0 chr11 70222286 70222399 -80561154 + L2 LINE L2 3195 3313 0 206 279 70 23 chr11 70222539 70222625 -80560928 + MIR3 SINE MIR 88 177 -31 1277 222 84 58 chr11 70222630 70223172 -80560381 - MLT1F1 LTR MaLR -8 559 11 259 324 29 9 chr11 70224221 70224326 -80559227 - L2 LINE L2 -172 3100 2994 2159 103 0 29 chr11 70224327 70224637 -80558916 + AluSx SINE Alu 3 303 -9 259 265 72 0 chr11 70224637 70224720 -80558833 - MLT1K LTR MaLR -409 179 91 319 288 53 30 chr11 70224721 70224853 -80558700 - MLT1K LTR MaLR -441 147 13 283 248 16 24 chr11 70228115 70228240 -80555313 + (TG)n Simple_repeat Simple_repeat 1 124 0 2282 99 0 6 chr11 70228283 70228596 -80554957 - AluY SINE Alu 0 311 1 2013 117 10 32 chr11 70229282 70229624 -80553929 - AluSx SINE Alu 0 312 3 376 281 58 14 chr11 70230180 70230319 -80553234 + MIR SINE MIR 4 148 -114 755 200 22 76 chr11 70230319 70230504 -80553049 + FRAM SINE Alu 1 173 -3 1464 175 0 29 chr11 70230546 70230855 -80552698 + AluSx SINE Alu 1 300 -12 1380 133 29 17 chr11 70230928 70231169 -80552384 + MER1B DNA MER1_type 96 339 0 1775 120 15 0 chr11 70231275 70231534 -80552019 - AluJo SINE Alu -21 291 29 2059 137 7 0 chr11 70231919 70232225 -80551328 - AluSx SINE Alu -4 308 1 458 199 15 17 chr11 70232234 70232359 -80551194 - L1ME3 LINE L1 0 6320 6055 927 197 0 16 chr11 70232360 70232543 -80551010 - AluJo SINE Alu -13 299 120 1529 140 17 63 chr11 70232553 70232853 -80550700 + AluJb SINE Alu 23 308 -4 2263 79 3 0 chr11 70232859 70233151 -80550402 - AluSp SINE Alu -19 294 2 985 199 79 87 chr11 70233153 70233269 -80550284 - L1ME3 LINE L1 -114 6048 5933 2232 81 17 0 chr11 70233269 70233565 -80549988 - AluSp SINE Alu -12 301 1 2097 120 3 0 chr11 70233572 70233864 -80549689 - AluSx SINE Alu -19 293 1 985 199 79 87 chr11 70233864 70234095 -80549458 - L1ME3 LINE L1 -235 5927 5696 2082 123 3 3 chr11 70234096 70234397 -80549156 - AluSq SINE Alu -10 303 3 2672 10 0 0 chr11 70234401 70234697 -80548856 - AluY SINE Alu -15 296 1 1239 166 2 30 chr11 70234711 70234993 -80548560 - MER66A-int LTR ERV1 -1585 6171 4607 359 236 36 45 chr11 70235025 70235135 -80548418 - MER4D LTR ERV1 -712 160 52 9034 191 114 109 chr11 70235135 70236923 -80546630 - MER66A-int LTR ERV1 -2224 4452 2674 1178 187 4 13 chr11 70236923 70237148 -80546405 - AluJb SINE Alu -5 307 85 9034 191 114 109 chr11 70237148 70238248 -80545305 - MER66A-int LTR ERV1 -4002 2674 1581 2293 105 0 3 chr11 70238248 70238561 -80544992 - AluSq SINE Alu -1 312 1 9034 191 114 109 chr11 70238561 70239103 -80544450 - MER66A-int LTR ERV1 -5095 1581 1043 1967 151 3 19 chr11 70239103 70239420 -80544133 + AluSx SINE Alu 1 312 0 9034 191 114 109 chr11 70239420 70240058 -80543495 - MER66A-int LTR ERV1 -5633 1043 2 1054 207 59 126 chr11 70240223 70240409 -80543144 - MER66A LTR ERV1 0 478 281 1975 121 4 0 chr11 70240409 70240714 -80542839 + AluSx SINE Alu 1 306 0 2090 129 10 0 chr11 70240717 70241019 -80542534 + AluSg SINE Alu 2 306 -4 1054 207 59 126 chr11 70241019 70241327 -80542226 - MER66A LTR ERV1 -199 279 97 729 242 6 0 chr11 70241393 70241554 -80541999 - MER74B LTR ERVL -250 372 211 271 189 0 0 chr11 70241589 70241642 -80541911 - MER74B LTR ERVL -569 53 1 377 307 18 0 chr11 70241650 70241764 -80541789 + ERVL LTR ERVL 4724 4839 -925 1431 149 5 0 chr11 70241767 70241988 -80541565 - MLT1A1 LTR MaLR 0 365 144 683 159 28 0 chr11 70242113 70242220 -80541333 - AluSp SINE Alu -67 246 137 2233 89 0 16 chr11 70242233 70242557 -80540996 - AluY SINE Alu 0 319 1 737 327 88 8 chr11 70242605 70242969 -80540584 - HERVL LTR ERVL -1529 4125 3733 1221 190 0 35 chr11 70242969 70243201 -80540352 - AluJo SINE Alu -87 225 2 237 65 0 0 chr11 70243223 70243254 -80540299 + (TTCC)n Simple_repeat Simple_repeat 4 34 0 2163 92 6 52 chr11 70243254 70243582 -80539971 - AluSq SINE Alu 0 313 1 615 214 32 80 chr11 70243583 70243609 -80539944 + MER63 DNA MER1_type 632 658 -403 993 227 77 0 chr11 70243609 70243816 -80539737 - MER58A DNA MER1_type -1 223 1 615 214 32 80 chr11 70243816 70243967 -80539586 + MER63 DNA MER1_type 658 802 -259 1267 189 80 7 chr11 70243967 70244253 -80539300 + AluJo SINE Alu 1 307 -5 566 104 0 130 chr11 70244254 70244298 -80539255 + MER63 DNA MER1_type 868 916 -144 * 2229 104 0 0 chr11 70244298 70244605 -80538948 - AluSg SINE Alu -3 307 1 566 104 0 130 chr11 70244605 70244658 -80538895 + MER63 DNA MER1_type 916 940 -120 2171 109 0 0 chr11 70244658 70244951 -80538602 - AluSx SINE Alu -15 297 5 566 104 0 130 chr11 70244951 70245006 -80538547 + MER63 DNA MER1_type 940 1001 -59 357 24 0 0 chr11 70245009 70245051 -80538502 + (T)n Simple_repeat Simple_repeat 1 42 0 28 0 0 0 chr11 70245073 70245101 -80538452 + GC_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr11 70245217 70245239 -80538314 + (A)n Simple_repeat Simple_repeat 1 22 0 283 291 105 31 chr11 70245242 70245500 -80538053 - HAL1b LINE L1 -1005 343 67 2214 97 3 0 chr11 70246174 70246463 -80537090 - AluSx SINE Alu -22 290 1 1865 168 26 0 chr11 70246720 70247024 -80536529 - AluJb SINE Alu 0 312 1 709 276 148 8 chr11 70247355 70247619 -80535934 + ERVL LTR ERVL 5041 5341 -423 483 149 99 159 chr11 70247624 70247654 -80535899 - MER53 DNA DNA 0 189 159 2459 154 20 2 chr11 70247654 70248050 -80535503 - MER57A LTR ERV1 0 403 1 483 149 99 159 chr11 70248050 70248061 -80535492 - MER53 DNA DNA -30 159 149 1996 143 7 0 chr11 70248061 70248369 -80535184 + AluSx SINE Alu 3 312 0 483 149 99 159 chr11 70248369 70248527 -80535026 - MER53 DNA DNA -40 149 1 4554 115 51 104 chr11 70248666 70248723 -80534830 - MER49 LTR ERV1 -8 915 856 1674 167 0 4 chr11 70248723 70248999 -80534554 + AluJo SINE Alu 1 275 -37 4554 115 51 104 chr11 70248999 70249479 -80534074 - MER49 LTR ERV1 -67 856 450 2183 72 0 14 chr11 70249479 70249769 -80533784 + AluSx SINE Alu 1 286 -26 4554 115 51 104 chr11 70249769 70250197 -80533356 - MER49 LTR ERV1 -473 450 1 391 275 13 54 chr11 70250298 70250374 -80533179 - MLT1I LTR MaLR -195 214 145 2184 95 10 0 chr11 70250374 70250670 -80532883 - AluSx SINE Alu -13 299 1 391 275 13 54 chr11 70250670 70250742 -80532811 - MLT1I LTR MaLR -264 145 72 404 296 34 25 chr11 70251031 70251234 -80532319 + L1ME LINE L1 5587 5791 -379 244 244 89 24 chr11 70251624 70251747 -80531806 + LTR67 LTR ERVL 424 554 -3 243 257 29 0 chr11 70251750 70251820 -80531733 - MIR SINE MIR -101 107 36 2279 96 0 0 chr11 70251850 70252152 -80531401 - AluSx SINE Alu -10 302 1 317 235 185 34 chr11 70252351 70252470 -80531083 + MIR SINE MIR 67 203 -59 1288 169 75 48 chr11 70252808 70253103 -80530450 + AluJb SINE Alu 1 303 -9 201 238 63 48 chr11 70253130 70253193 -80530360 + MIR SINE MIR 55 118 -90 743 258 68 7 chr11 70253326 70253662 -80529891 + MSTD LTR MaLR 1 396 0 720 314 106 34 chr11 70256798 70257266 -80526287 - L1M4 LINE L1 -2243 3903 3356 2158 95 0 0 chr11 70257266 70257572 -80525981 - AluSx SINE Alu 0 306 1 720 314 106 34 chr11 70257572 70257870 -80525683 - L1M4 LINE L1 -2790 3356 3081 2188 99 3 10 chr11 70257918 70258248 -80525305 - AluSx SINE Alu 0 312 1 721 211 0 23 chr11 70258265 70258398 -80525155 + FLAM_A SINE Alu 1 130 -3 24 0 0 0 chr11 70258610 70258634 -80524919 + AT_rich Low_complexity Low_complexity 1 24 0 2107 107 0 16 chr11 70258634 70258951 -80524602 - AluSx SINE Alu 0 312 1 1947 108 10 26 chr11 70259294 70259601 -80523952 + AluSx SINE Alu 1 302 -10 2208 91 3 0 chr11 70260231 70260529 -80523024 - AluSp SINE Alu -14 299 1 1806 83 0 4 chr11 70260992 70261233 -80522320 - AluSq SINE Alu -73 240 1 2025 120 7 3 chr11 70261987 70262279 -80521274 - AluSx SINE Alu -14 298 6 2320 84 0 3 chr11 70262555 70262864 -80520689 - AluSx SINE Alu -4 308 1 1497 186 24 10 chr11 70262867 70263157 -80520396 - AluJo SINE Alu -18 294 1 264 342 161 16 chr11 70263188 70263431 -80520122 - L2 LINE L2 -2 3270 2993 1960 118 51 3 chr11 70263440 70263736 -80519817 + AluSx SINE Alu 1 310 -2 220 322 35 0 chr11 70264063 70264150 -80519403 - MIR3 SINE MIR -37 171 82 266 269 8 85 chr11 70264378 70264396 -80519157 - MIR3 SINE MIR -49 159 141 2112 112 3 0 chr11 70264396 70264691 -80518862 - AluSq SINE Alu -17 296 1 266 269 8 85 chr11 70264691 70264802 -80518751 - MIR3 SINE MIR -67 141 40 1505 150 90 11 chr11 70265864 70266130 -80517423 - AluJb SINE Alu -25 287 1 592 354 10 0 chr11 70268151 70268357 -80515196 - MIR SINE MIR -21 241 34 208 246 31 0 chr11 70269354 70269419 -80514134 - MIR SINE MIR -71 137 71 230 280 108 0 chr11 70269818 70269911 -80513642 + MIR SINE MIR 49 151 -57 262 286 14 0 chr11 70269954 70270024 -80513529 - MIR SINE MIR -2 260 190 186 226 38 19 chr11 70270033 70270086 -80513467 - MIR SINE MIR -179 83 30 1153 102 24 0 chr11 70270094 70270261 -80513292 + AluSp SINE Alu 136 306 -7 207 318 72 87 chr11 70271002 70271235 -80512318 - L2 LINE L2 -434 2880 2652 2154 107 3 0 chr11 70271235 70271535 -80512018 + AluSx SINE Alu 1 301 -11 207 318 72 87 chr11 70271535 70271647 -80511906 - L2 LINE L2 -662 2652 2540 213 261 59 78 chr11 70271829 70271982 -80511571 + MIR3 SINE MIR 18 167 -41 231 273 61 20 chr11 70272302 70272401 -80511152 - MIR SINE MIR -57 151 49 2132 121 0 0 chr11 70272706 70273011 -80510542 - AluSx SINE Alu -7 305 1 1932 141 3 16 chr11 70273126 70273438 -80510115 - AluSx SINE Alu -4 308 1 300 305 48 9 chr11 70273439 70273544 -80510009 - MIR SINE MIR -59 203 95 197 380 83 0 chr11 70273706 70273827 -80509726 - L2 LINE L2 -21 3251 3121 1902 114 49 29 chr11 70273834 70274141 -80509412 + AluSq SINE Alu 1 313 0 1689 164 0 53 chr11 70274413 70274731 -80508822 - AluSx SINE Alu -6 306 6 253 173 19 0 chr11 70274753 70274805 -80508748 + AluSg/x SINE Alu 118 170 -132 2017 87 0 0 chr11 70274807 70275072 -80508481 - AluSq SINE Alu -48 265 1 2440 61 0 10 chr11 70275084 70275395 -80508158 - AluY SINE Alu -3 308 1 1499 197 61 70 chr11 70275403 70275844 -80507709 - Charlie6 DNA MER1_type -1793 1707 1271 2377 68 3 3 chr11 70275844 70276155 -80507398 + AluY SINE Alu 1 311 0 193 174 65 0 chr11 70276331 70276377 -80507176 + L2 LINE L2 3265 3313 0 958 296 174 34 chr11 70276434 70277351 -80506202 - L2 LINE L2 -456 2858 1813 2173 117 0 3 chr11 70277380 70277689 -80505864 - AluSg SINE Alu -2 308 1 228 299 158 0 chr11 70278136 70278263 -80505290 - MIR3 SINE MIR -21 187 41 313 295 86 14 chr11 70280646 70280785 -80502768 + MIR SINE MIR 36 184 -78 651 205 195 24 chr11 70280892 70281097 -80502456 + MIR SINE MIR 13 252 -10 2172 112 0 13 chr11 70281845 70282159 -80501394 - AluSg SINE Alu 0 310 1 320 304 104 77 chr11 70282246 70282716 -80500837 - L2 LINE L2 -17 3296 2814 283 265 41 31 chr11 70282765 70282863 -80500690 - MIR SINE MIR -32 230 132 569 221 39 28 chr11 70283055 70283236 -80500317 - MER58A DNA MER1_type -17 207 25 217 186 23 0 chr11 70283317 70283360 -80500193 + MER5B DNA MER1_type 3 46 -132 1604 141 133 0 chr11 70283361 70283624 -80499929 - AluJo SINE Alu -2 300 3 2054 115 3 3 chr11 70283638 70283933 -80499620 - AluSg SINE Alu -15 295 1 270 314 162 0 chr11 70283983 70284174 -80499379 - L1MC4 LINE L1 -28 8014 7793 439 277 127 9 chr11 70284921 70285141 -80498412 - L2 LINE L2 -2224 1090 845 479 198 0 0 chr11 70285144 70285230 -80498323 - AluSg/x SINE Alu -18 292 207 284 192 164 0 chr11 70285230 70285303 -80498250 - MLT1B LTR MaLR -294 96 12 300 234 37 19 chr11 70285317 70285424 -80498129 + L1M4 LINE L1 4541 4649 -1497 986 182 0 122 chr11 70285727 70286023 -80497530 + AluJo SINE Alu 46 305 -7 2280 54 3 17 chr11 70286104 70286402 -80497151 + AluY SINE Alu 1 294 -17 373 284 115 38 chr11 70286424 70286607 -80496946 + L1M4 LINE L1 5164 5360 -786 776 211 10 72 chr11 70287299 70287508 -80496045 + AluSc SINE Alu 3 198 -111 914 91 14 21 chr11 70287614 70287757 -80495796 - LTR3 LTR ERVK -289 143 2 1288 132 0 5 chr11 70287757 70287946 -80495607 + AluSg/x SINE Alu 107 294 -18 1550 146 14 21 chr11 70287994 70288282 -80495271 + AluJb SINE Alu 8 293 -19 1333 141 23 100 chr11 70288342 70288641 -80494912 - AluJo SINE Alu -16 296 21 467 214 137 0 chr11 70289410 70289541 -80494012 - MIR SINE MIR -46 216 68 244 373 79 8 chr11 70289579 70289705 -80493848 - MIR SINE MIR -20 242 108 211 289 234 8 chr11 70290223 70290351 -80493202 - MIR SINE MIR -46 216 60 631 284 114 13 chr11 70292053 70292359 -80491194 - L1ME LINE L1 -511 5659 5323 2110 114 13 7 chr11 70292359 70292665 -80490888 - AluSx SINE Alu -4 308 1 329 230 124 26 chr11 70292751 70292864 -80490689 - MIR SINE MIR -56 152 29 * 343 318 159 6 chr11 70292847 70293023 -80490530 + MIR SINE MIR 52 254 -8 333 264 56 19 chr11 70292987 70293027 -80490526 + AluJo SINE Alu 119 141 -161 455 183 167 58 chr11 70293027 70293147 -80490406 + FLAM_C SINE Alu 1 133 0 198 0 0 0 chr11 70296300 70296322 -80487231 + (T)n Simple_repeat Simple_repeat 1 22 0 180 286 63 0 chr11 70296681 70296744 -80486809 + MIR SINE MIR 40 106 -102 190 111 0 44 chr11 70302133 70302178 -80481375 + (TG)n Simple_repeat Simple_repeat 1 43 0 321 346 124 10 chr11 70304266 70304468 -80479085 - MIR SINE MIR -32 230 6 2088 92 0 17 chr11 70305697 70305991 -80477562 - AluSq SINE Alu -24 289 1 22 56 0 0 chr11 70305996 70306032 -80477521 + AT_rich Low_complexity Low_complexity 1 36 0 1570 195 0 16 chr11 70306139 70306276 -80477277 + AluJo SINE Alu 1 139 -173 2130 114 0 0 chr11 70306276 70306573 -80476980 + AluSx SINE Alu 1 297 -15 1570 195 0 16 chr11 70306573 70306742 -80476811 + AluJo SINE Alu 139 302 -10 333 211 171 16 chr11 70306821 70306944 -80476609 + MIR3 SINE MIR 8 149 -59 2181 90 3 13 chr11 70306998 70307298 -80476255 - AluSq SINE Alu -16 297 1 2028 107 0 20 chr11 70308252 70308593 -80474960 + AluY SINE Alu 1 311 0 2240 92 7 0 chr11 70308617 70308923 -80474630 + AluSx SINE Alu 1 308 -4 707 295 75 4 chr11 70308987 70309214 -80474339 - MIR SINE MIR 0 262 20 249 353 53 37 chr11 70309261 70309448 -80474105 - L2 LINE L2 -1 3271 3082 353 309 85 0 chr11 70309608 70309775 -80473778 - MIR SINE MIR -57 205 19 2256 112 0 3 chr11 70310800 70311114 -80472439 + AluSp SINE Alu 1 313 0 249 108 0 0 chr11 70311119 70311156 -80472397 + (GGAA)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chr11 70311156 70311176 -80472377 + (CAGG)n Simple_repeat Simple_repeat 2 21 0 1803 108 48 30 chr11 70311176 70311471 -80472082 + AluSx SINE Alu 9 308 -4 331 297 72 0 chr11 70311479 70311590 -80471963 + L1ME4a LINE L1 5313 5431 -2377 951 119 0 8 chr11 70311621 70311755 -80471798 + FLAM_C SINE Alu 1 133 0 2212 116 0 0 chr11 70311765 70312066 -80471487 + AluSg SINE Alu 1 301 -9 1951 133 0 20 chr11 70312152 70312453 -80471100 + AluSx SINE Alu 1 295 -17 317 281 173 4 chr11 70312454 70312732 -80470821 + L1ME4a LINE L1 5790 6114 -7 2352 72 0 7 chr11 70312834 70313140 -80470413 + AluSx SINE Alu 1 304 -8 1503 184 36 4 chr11 70313636 70313913 -80469640 + AluJo SINE Alu 1 286 -26 2263 90 6 10 chr11 70313913 70314224 -80469329 - AluSg SINE Alu 0 310 1 35 24 0 0 chr11 70314224 70314266 -80469287 + AT_rich Low_complexity Low_complexity 1 42 0 183 222 0 0 chr11 70315322 70315358 -80468195 - L3 LINE CR1 -486 1091 1056 448 232 0 32 chr11 70316588 70316773 -80466780 + (CA)n Simple_repeat Simple_repeat 1 179 0 213 196 0 0 chr11 70316840 70316896 -80466657 + (CA)n Simple_repeat Simple_repeat 1 56 0 2348 96 0 0 chr11 70317715 70318027 -80465526 + AluSx SINE Alu 1 312 0 2145 121 0 3 chr11 70318853 70319160 -80464393 + AluSx SINE Alu 1 306 -6 2365 75 7 3 chr11 70319728 70320036 -80463517 - AluSq SINE Alu -4 309 1 1967 113 55 0 chr11 70322050 70322341 -80461212 - AluSg SINE Alu -3 307 1 2080 104 0 7 chr11 70322431 70322746 -80460807 + AluSc SINE Alu 1 313 0 1843 136 19 16 chr11 70323508 70323816 -80459737 + AluJo SINE Alu 1 309 -3 209 196 20 43 chr11 70324680 70324749 -80458804 + MIR SINE MIR 95 163 -55 480 312 13 26 chr11 70325028 70325182 -80458371 + L2 LINE L2 3121 3272 0 2450 36 0 10 chr11 70325292 70325641 -80457912 + AluY SINE Alu 2 347 0 1828 147 13 7 chr11 70325659 70325958 -80457595 + AluSx SINE Alu 1 301 -11 1710 191 0 0 chr11 70325958 70326280 -80457273 + AluJb SINE Alu 1 322 0 747 190 0 29 chr11 70326287 70326424 -80457129 + FLAM_A SINE Alu 1 133 0 751 164 0 0 chr11 70326431 70326565 -80456988 + L1MB5 LINE L1 6041 6174 0 940 255 122 19 chr11 70326770 70327147 -80456406 + L2 LINE L2 2898 3313 0 194 279 0 0 chr11 70327346 70327389 -80456164 + L2 LINE L2 3238 3280 -33 2297 100 0 0 chr11 70327911 70328222 -80455331 + AluSx SINE Alu 1 311 -1 1576 127 0 0 chr11 70328512 70328732 -80454821 - AluSq SINE Alu -16 297 78 189 107 0 0 chr11 70328757 70328785 -80454768 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 1666 184 16 0 chr11 70328785 70329090 -80454463 - AluJb SINE Alu 0 312 3 216 0 0 0 chr11 70329177 70329201 -80454352 + (CA)n Simple_repeat Simple_repeat 1 24 0 731 250 78 9 chr11 70329658 70329922 -80453631 - Charlie8 DNA MER1_type -2229 188 2 278 273 188 23 chr11 70330089 70330217 -80453336 + MIR SINE MIR 71 219 -43 1687 174 0 7 chr11 70330394 70330405 -80453148 - AluJb SINE Alu -16 296 286 354 61 0 0 chr11 70330405 70330454 -80453099 + (TG)n Simple_repeat Simple_repeat 2 50 0 1687 174 0 7 chr11 70330454 70330740 -80452813 - AluJb SINE Alu -26 286 1 2100 129 0 7 chr11 70330983 70331285 -80452268 + AluSx SINE Alu 1 300 -12 1973 136 0 0 chr11 70331414 70331736 -80451817 - AluSx SINE Alu 0 312 1 26 0 0 0 chr11 70331796 70331822 -80451731 + AT_rich Low_complexity Low_complexity 1 26 0 2387 67 0 3 chr11 70331833 70332133 -80451420 + AluY SINE Alu 1 299 -12 433 71 0 18 chr11 70332141 70332197 -80451356 + FLAM_A SINE Alu 62 116 -26 334 269 0 0 chr11 70332204 70332271 -80451282 + L1MC4 LINE L1 6636 6702 -1340 325 289 11 22 chr11 70332282 70332372 -80451181 + L1MC4 LINE L1 6614 6702 -1340 441 103 0 0 chr11 70332374 70332442 -80451111 + (TA)n Simple_repeat Simple_repeat 1 68 0 2175 108 0 0 chr11 70332897 70333193 -80450360 - AluSx SINE Alu -12 300 5 304 247 36 127 chr11 70333425 70333591 -80449962 + MIR SINE MIR 111 261 -1 333 273 180 0 chr11 70333841 70333980 -80449573 + HAL1 LINE L1 1501 1664 -843 334 304 70 45 chr11 70334073 70334274 -80449279 - L2 LINE L2 -1 3312 3107 2151 94 0 3 chr11 70334346 70334644 -80448909 + AluSg SINE Alu 1 297 -13 1203 236 151 19 chr11 70334644 70335060 -80448493 - MLT1D LTR MaLR -31 474 4 233 202 12 71 chr11 70335064 70335148 -80448405 - L2 LINE L2 -1553 1761 1683 1722 166 23 10 chr11 70335149 70335457 -80448096 + AluJo SINE Alu 1 312 0 1530 297 77 45 chr11 70335464 70336314 -80447239 + HAL1 LINE L1 168 990 -1517 2058 95 0 57 chr11 70336314 70336630 -80446923 + AluSx SINE Alu 1 298 -14 1530 297 77 45 chr11 70336630 70336699 -80446854 + HAL1 LINE L1 990 1055 -1452 1925 159 38 3 chr11 70336699 70337038 -80446515 + L1MA4 LINE L1 5939 6289 -11 1530 297 77 45 chr11 70337038 70337109 -80446444 + HAL1 LINE L1 1055 1190 -1317 1254 100 11 11 chr11 70337295 70337475 -80446078 + AluSg/x SINE Alu 130 309 -1 231 36 0 0 chr11 70337484 70337512 -80446041 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 266 283 0 44 chr11 70338511 70338691 -80444862 + (CACTT)n Simple_repeat Simple_repeat 3 174 0 230 305 0 42 chr11 70338616 70338783 -80444770 + (CACTC)n Simple_repeat Simple_repeat 3 162 0 * 302 248 0 55 chr11 70339708 70339817 -80443736 + C-rich Low_complexity Low_complexity 6 108 0 331 170 9 9 chr11 70340406 70340512 -80443041 + (TG)n Simple_repeat Simple_repeat 2 107 0 614 175 6 0 chr11 70340527 70340704 -80442849 + (TG)n Simple_repeat Simple_repeat 1 178 0 623 194 7 6 chr11 70340728 70341344 -80442209 + (TG)n Simple_repeat Simple_repeat 1 616 0 223 299 0 15 chr11 70342188 70342255 -80441298 + MIR SINE MIR 196 261 -1 2037 130 0 3 chr11 70342490 70342790 -80440763 + AluSx SINE Alu 1 299 -13 4032 63 10 8 chr11 70342790 70343313 -80440240 + L1PA8 LINE L1 5649 6172 0 547 236 46 43 chr11 70343278 70343592 -80439961 + L1ME LINE L1 2080 2394 -4002 946 198 0 12 chr11 70343594 70343766 -80439787 + FRAM SINE Alu 1 169 -7 2104 136 7 0 chr11 70343767 70344077 -80439476 + AluSx SINE Alu 1 312 0 2262 116 6 0 chr11 70344103 70344414 -80439139 + AluSq SINE Alu 1 313 0 336 48 0 0 chr11 70344414 70344456 -80439097 + (GGAA)n Simple_repeat Simple_repeat 1 42 0 1830 235 35 24 chr11 70344456 70344622 -80438931 + L1ME LINE L1 2449 2612 -3603 836 177 0 0 chr11 70344622 70344752 -80438801 - FLAM_C SINE Alu -1 132 3 1830 235 35 24 chr11 70344752 70345240 -80438313 + L1ME LINE L1 2612 3110 -3105 2009 107 3 17 chr11 70345272 70345447 -80438106 - AluSx SINE Alu 0 306 135 2610 14 0 0 chr11 70345447 70345740 -80437813 - AluYa5 SINE Alu 0 311 19 2009 107 3 17 chr11 70345740 70345874 -80437679 - AluSx SINE Alu -171 135 1 522 120 0 0 chr11 70345904 70345979 -80437574 + AluJ/FRAM SINE Alu 225 299 -13 1605 209 66 170 chr11 70345980 70346106 -80437447 + L1ME LINE L1 3818 3955 -2284 2278 57 14 0 chr11 70346106 70346416 -80437137 + AluSp SINE Alu 1 314 0 1605 209 66 170 chr11 70346416 70346760 -80436793 + L1ME LINE L1 3955 4333 -1906 1834 156 0 3 chr11 70346760 70347049 -80436504 + AluJo SINE Alu 11 298 -14 1605 209 66 170 chr11 70347049 70347162 -80436391 + L1ME LINE L1 4333 4456 -1783 1988 111 47 3 chr11 70347162 70347460 -80436093 - AluSq SINE Alu 0 313 3 1849 144 0 30 chr11 70347462 70347767 -80435786 - AluJb SINE Alu -16 296 1 1605 209 66 170 chr11 70347767 70347832 -80435721 + L1ME LINE L1 4457 4527 -1712 1152 112 0 0 chr11 70347832 70347993 -80435560 + AluSq SINE Alu 152 312 -1 1605 209 66 170 chr11 70347993 70348598 -80434955 + L1ME LINE L1 4527 5193 -1046 2043 112 0 14 chr11 70348598 70348894 -80434659 + AluSx SINE Alu 3 294 -18 2358 74 7 3 chr11 70348897 70349206 -80434347 + AluSq SINE Alu 1 310 -3 2143 62 11 0 chr11 70349204 70349476 -80434077 + AluY SINE Alu 33 307 -4 * 1605 209 66 170 chr11 70349206 70349516 -80434037 + L1ME LINE L1 5195 5044 -1195 2146 117 7 0 chr11 70349516 70349823 -80433730 + AluSx SINE Alu 1 309 -3 1605 209 66 170 chr11 70349823 70350292 -80433261 + L1ME LINE L1 5043 5559 -680 671 251 142 5 chr11 70350316 70350535 -80433018 + L1ME3 LINE L1 4564 4812 -1334 427 158 37 12 chr11 70350605 70350687 -80432866 + FLAM_C SINE Alu 56 139 -4 1398 185 71 140 chr11 70350703 70350914 -80432639 + L1ME3 LINE L1 5475 5699 -463 2227 101 3 0 chr11 70350914 70351211 -80432342 + AluSx SINE Alu 1 298 -14 1398 185 71 140 chr11 70351211 70351246 -80432307 + L1ME3 LINE L1 5699 5735 -427 793 153 7 36 chr11 70351246 70351383 -80432170 + FLAM_A SINE Alu 1 133 0 2267 85 3 0 chr11 70351388 70351683 -80431870 + AluY SINE Alu 1 296 -15 2082 123 3 3 chr11 70351687 70351988 -80431565 + AluSq SINE Alu 3 303 -10 1398 185 71 140 chr11 70351988 70352220 -80431333 + L1ME3 LINE L1 5742 5988 -174 2084 123 3 0 chr11 70352220 70352512 -80431041 + AluSx SINE Alu 1 293 -19 2232 81 17 0 chr11 70352519 70352815 -80430738 + AluSp SINE Alu 1 301 -12 1398 185 71 140 chr11 70352815 70352931 -80430622 + L1ME3 LINE L1 5994 6048 -114 2263 79 3 0 chr11 70352933 70353225 -80430328 + AluSp SINE Alu 2 294 -19 1525 136 17 65 chr11 70353236 70353530 -80430023 - AluJb SINE Alu -10 302 23 927 197 0 16 chr11 70353540 70353723 -80429830 + AluJo SINE Alu 120 299 -13 449 169 8 51 chr11 70353731 70353849 -80429704 + L1ME3 LINE L1 6050 6162 0 2059 137 7 0 chr11 70353858 70354164 -80429389 + AluSx SINE Alu 1 308 -4 1830 121 11 0 chr11 70354549 70354813 -80428740 + AluJo SINE Alu 29 295 -17 491 279 41 47 chr11 70355041 70355092 -80428461 + MIR SINE MIR 3 53 -209 2184 102 10 3 chr11 70355092 70355395 -80428158 + AluSx SINE Alu 2 306 -6 491 279 41 47 chr11 70355395 70355563 -80427990 + MIR SINE MIR 53 224 -38 232 338 0 0 chr11 70358486 70358557 -80424996 + L2 LINE L2 2986 3056 -216 211 294 0 0 chr11 70359262 70359313 -80424240 + (TG)n Simple_repeat Simple_repeat 1 51 0 248 337 115 0 chr11 70367730 70367846 -80415707 + MIR SINE MIR 35 161 -68 295 258 67 0 chr11 70368032 70368121 -80415432 - MIR3 SINE MIR -44 164 70 266 271 116 52 chr11 70372622 70372793 -80410760 - MIR3 SINE MIR -1 207 30 221 268 0 0 chr11 70375141 70375197 -80408356 + MIR3 SINE MIR 116 171 -37 324 348 9 9 chr11 70375355 70375467 -80408086 + MIR SINE MIR 3 114 -148 207 313 62 21 chr11 70375482 70375578 -80407975 - MIR SINE MIR -38 224 125 251 186 71 43 chr11 70375724 70375794 -80407759 - MIR3 SINE MIR -46 162 91 28 29 0 0 chr11 70378771 70378806 -80404747 + GC_rich Low_complexity Low_complexity 1 35 0 37 52 0 0 chr11 70379028 70379086 -80404467 + GC_rich Low_complexity Low_complexity 1 58 0 2106 111 10 0 chr11 70380196 70380494 -80403059 + AluSx SINE Alu 1 301 -11 2000 109 7 7 chr11 70380496 70380781 -80402772 + AluSg SINE Alu 1 285 -25 2550 163 85 53 chr11 70380795 70381144 -80402409 + L1MB7 LINE L1 5464 5800 -384 2528 55 0 0 chr11 70381144 70381452 -80402101 - AluY SINE Alu -3 308 1 2550 163 85 53 chr11 70381452 70381521 -80402032 + L1MB7 LINE L1 5800 5865 -319 2154 113 3 0 chr11 70381521 70381821 -80401732 - AluSp SINE Alu -12 301 1 2550 163 85 53 chr11 70381821 70382047 -80401506 + L1MB7 LINE L1 5865 6135 -49 1912 76 28 0 chr11 70382047 70382296 -80401257 + AluY SINE Alu 37 292 -19 2550 163 85 53 chr11 70382296 70382330 -80401223 + L1MB7 LINE L1 6135 6166 -18 2094 135 0 0 chr11 70382330 70382634 -80400919 + AluSx SINE Alu 1 304 -8 206 250 23 0 chr11 70382645 70382689 -80400864 - MIR SINE MIR -103 159 115 231 288 200 9 chr11 70382789 70382970 -80400583 - MIR SINE MIR -21 241 29 331 239 6 132 chr11 70383238 70383265 -80400288 - L2 LINE L2 0 3313 3284 2089 112 0 7 chr11 70383265 70383575 -80399978 + AluSx SINE Alu 1 308 0 331 239 6 132 chr11 70383575 70383705 -80399848 - L2 LINE L2 -29 3284 3175 2497 52 0 3 chr11 70384041 70384347 -80399206 + AluY SINE Alu 1 305 -6 2313 94 0 3 chr11 70384716 70385023 -80398530 - AluSq SINE Alu -7 306 1 1534 186 24 10 chr11 70385026 70385316 -80398237 - AluJo SINE Alu -18 294 1 308 350 161 16 chr11 70385347 70385590 -80397963 - L2 LINE L2 -2 3270 2993 1991 118 51 3 chr11 70385599 70385895 -80397658 + AluSx SINE Alu 1 310 -2 240 322 35 0 chr11 70386222 70386309 -80397244 - MIR3 SINE MIR -37 171 82 299 259 6 108 chr11 70386509 70386555 -80396998 - MIR3 SINE MIR -27 181 132 2175 105 3 0 chr11 70386555 70386850 -80396703 - AluSq SINE Alu -17 296 1 299 259 6 108 chr11 70386850 70386961 -80396592 - MIR3 SINE MIR -76 132 40 1543 150 90 11 chr11 70388024 70388290 -80395263 - AluJb SINE Alu -25 287 1 624 354 10 0 chr11 70390309 70390515 -80393038 - MIR SINE MIR -21 241 34 219 255 24 3 chr11 70391495 70391577 -80391976 - MIR SINE MIR -71 137 71 241 280 108 0 chr11 70391976 70392069 -80391484 + MIR SINE MIR 49 151 -57 274 286 14 0 chr11 70392112 70392182 -80391371 - MIR SINE MIR -2 260 190 190 226 38 19 chr11 70392191 70392244 -80391309 - MIR SINE MIR -179 83 30 1163 102 24 0 chr11 70392252 70392419 -80391134 + AluSp SINE Alu 136 306 -7 240 335 67 81 chr11 70393160 70393393 -80390160 - L2 LINE L2 -434 2880 2652 2182 107 3 0 chr11 70393393 70393693 -80389860 + AluSx SINE Alu 1 301 -11 240 335 67 81 chr11 70393693 70393805 -80389748 - L2 LINE L2 -662 2652 2540 233 261 59 78 chr11 70393987 70394140 -80389413 + MIR3 SINE MIR 18 167 -41 502 338 87 58 chr11 70395219 70395661 -80387892 + L2 LINE L2 2223 2710 -562 1682 54 0 0 chr11 70395661 70395864 -80387689 - AluSg/x SINE Alu -19 290 88 502 338 87 58 chr11 70395864 70396212 -80387341 + L2 LINE L2 2710 3046 -226 31 0 0 0 chr11 70396830 70396861 -80386692 + GC_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr11 70396968 70396990 -80386563 + GC_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr11 70397455 70397489 -80386064 + GC_rich Low_complexity Low_complexity 1 34 0 307 309 64 36 chr11 70398309 70398419 -80385134 - MIR SINE MIR -62 146 34 1847 138 0 24 chr11 70399747 70400038 -80383515 + AluSx SINE Alu 9 292 -20 313 328 97 17 chr11 70400539 70400777 -80382776 + L2 LINE L2 2916 3172 -100 230 0 33 0 chr11 70400879 70400909 -80382644 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 2055 108 7 0 chr11 70400909 70401187 -80382366 - AluSx SINE Alu -32 280 1 747 196 0 0 chr11 70401197 70401330 -80382223 - FLAM_C SINE Alu 0 133 1 2310 82 0 3 chr11 70401351 70401655 -80381898 - AluY SINE Alu -8 303 1 190 254 104 0 chr11 70401664 70401731 -80381822 - MIR SINE MIR -109 153 80 885 155 0 0 chr11 70402255 70402397 -80381156 - FLAM_C SINE Alu -1 142 1 557 265 33 33 chr11 70402403 70402584 -80380969 + MIR SINE MIR 12 192 -70 372 342 50 40 chr11 70402685 70402986 -80380567 + L2 LINE L2 2884 3187 -85 408 217 70 35 chr11 70403347 70403462 -80380091 + MIR3 SINE MIR 15 133 -75 293 264 74 54 chr11 70403460 70403559 -80379994 - MIR SINE MIR -1 261 157 * 2319 106 0 0 chr11 70403559 70403871 -80379682 - AluSx SINE Alu 0 312 1 293 264 74 54 chr11 70403871 70403919 -80379634 - MIR SINE MIR -105 157 111 203 327 129 0 chr11 70403962 70404063 -80379490 + MIR SINE MIR 132 245 -17 1426 135 99 67 chr11 70404119 70404266 -80379287 - AluJo SINE Alu -11 301 160 2247 105 0 9 chr11 70404266 70404581 -80378972 - AluSx SINE Alu 0 312 1 1426 135 99 67 chr11 70404581 70404715 -80378838 - AluJo SINE Alu -152 160 11 527 183 0 19 chr11 70404723 70404827 -80378726 + MIR SINE MIR 40 141 -121 1486 170 59 39 chr11 70404925 70405231 -80378322 + AluJb SINE Alu 1 312 0 200 213 21 0 chr11 70405951 70405998 -80377555 + (CGGA)n Simple_repeat Simple_repeat 3 50 0 207 286 12 12 chr11 70406200 70406284 -80377269 + G-rich Low_complexity Low_complexity 3 86 0 1219 159 18 18 chr11 70407158 70407378 -80376175 - AluJb SINE Alu -8 304 85 424 269 49 35 chr11 70407584 70407750 -80375803 - MIR SINE MIR -15 193 22 281 352 56 0 chr11 70407802 70407927 -80375626 - MIR3 SINE MIR -15 193 62 1169 169 152 16 chr11 70407927 70408170 -80375383 + AluJb SINE Alu 1 276 -36 324 240 226 34 chr11 70408319 70408465 -80375088 + MIR SINE MIR 39 212 -50 270 0 0 0 chr11 70408571 70408601 -80374952 + (TG)n Simple_repeat Simple_repeat 1 30 0 292 43 43 0 chr11 70408601 70408647 -80374906 + (GA)n Simple_repeat Simple_repeat 2 49 0 586 262 96 38 chr11 70408656 70408890 -80374663 + MIR SINE MIR 3 249 -13 2119 101 0 0 chr11 70408891 70409169 -80374384 + AluSg SINE Alu 1 278 -32 288 0 0 0 chr11 70409171 70409203 -80374350 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1032 131 0 37 chr11 70409916 70410180 -80373373 - AluJb SINE Alu 0 310 1 1544 180 29 13 chr11 70410193 70410504 -80373049 - L1MB5 LINE L1 0 6174 5859 916 184 8 96 chr11 70410517 70410767 -80372786 - AluJb SINE Alu 0 312 85 352 143 0 0 chr11 70410767 70410823 -80372730 - AluY SINE Alu -52 249 194 334 183 0 14 chr11 70410823 70410894 -80372659 - L1MB5 LINE L1 -310 5868 5799 2349 71 0 0 chr11 70410899 70411196 -80372357 - AluY SINE Alu -13 298 2 758 194 32 124 chr11 70411197 70411232 -80372321 - L1MB5 LINE L1 -788 5358 5321 663 248 0 0 chr11 70411232 70411365 -80372188 - FLAM_C SINE Alu 0 133 1 1841 134 0 0 chr11 70411366 70411628 -80371925 - AluSx SINE Alu -49 263 2 758 194 32 124 chr11 70411628 70411645 -80371908 - L1MB5 LINE L1 -825 5321 5304 2271 94 3 0 chr11 70411645 70411943 -80371610 - AluSp SINE Alu -14 299 1 758 194 32 124 chr11 70411943 70412299 -80371254 - L1MB5 LINE L1 -842 5304 4985 * 1910 224 47 71 chr11 70412287 70412360 -80371193 - L1ME3 LINE L1 -6 6156 6083 2130 125 0 0 chr11 70412360 70412665 -80370888 - AluSx SINE Alu -7 305 1 1337 190 95 0 chr11 70412665 70412825 -80370728 - AluJo SINE Alu -12 300 157 189 0 0 0 chr11 70412825 70412846 -80370707 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1337 190 95 0 chr11 70412846 70412959 -80370594 - AluJo SINE Alu -155 157 1 1910 224 47 71 chr11 70412959 70413550 -80370003 - L1ME3 LINE L1 -77 6085 5507 2052 134 7 0 chr11 70413560 70413858 -80369695 - AluSx SINE Alu -12 300 1 611 264 98 10 chr11 70414183 70414376 -80369177 - MIR SINE MIR -15 247 38 230 389 50 0 chr11 70414457 70414596 -80368957 + L2 LINE L2 2933 3078 -194 1775 164 3 3 chr11 70414780 70415099 -80368454 - AluSx SINE Alu 0 319 1 305 322 33 25 chr11 70415264 70415385 -80368168 - L1MC4a LINE L1 -1868 5940 5819 984 185 0 6 chr11 70415391 70415564 -80367989 + FRAM SINE Alu 1 164 -12 902 223 52 3 chr11 70415577 70415879 -80367674 - L1ME2 LINE L1 -14 6150 5756 1258 82 0 0 chr11 70415952 70416111 -80367442 + AluY SINE Alu 141 299 -12 2187 118 0 0 chr11 70416121 70416426 -80367127 + AluSx SINE Alu 1 305 -7 240 273 61 20 chr11 70416731 70416830 -80366723 + MIR SINE MIR 49 151 -57 718 316 39 23 chr11 70416917 70417058 -80366495 + MIR SINE MIR 3 151 -111 2317 90 3 0 chr11 70417058 70417357 -80366196 + AluSp SINE Alu 1 300 -13 718 316 39 23 chr11 70417357 70417471 -80366082 + MIR SINE MIR 151 262 0 182 339 24 48 chr11 70418313 70418437 -80365116 + L3 LINE CR1 1306 1426 -151 437 188 222 8 chr11 70418513 70418630 -80364923 + MIR SINE MIR 96 237 -25 1414 180 41 20 chr11 70418642 70418937 -80364616 - AluJb SINE Alu -11 301 1 255 196 20 0 chr11 70419753 70419804 -80363749 + MIR SINE MIR 100 151 -57 685 120 10 5 chr11 70419806 70420001 -80363552 + AluSx SINE Alu 1 294 -18 722 249 88 0 chr11 70420166 70420347 -80363206 + MIR SINE MIR 31 227 -35 197 88 59 0 chr11 70420363 70420397 -80363156 - MIR SINE MIR -75 133 98 833 234 0 0 chr11 70420430 70420584 -80362969 + FRAM SINE Alu 1 154 -22 2257 68 3 3 chr11 70420584 70420877 -80362676 + AluY SINE Alu 1 293 -18 251 321 57 61 chr11 70420969 70421265 -80362288 - L2 LINE L2 -160 3112 2818 359 237 114 0 chr11 70421285 70421399 -80362154 - L2 LINE L2 0 3272 3146 413 293 120 12 chr11 70422416 70422583 -80360970 + MIR SINE MIR 42 226 -36 613 250 106 28 chr11 70422638 70422818 -80360735 + MER91A DNA MER1_type 1 194 -2 390 279 29 0 chr11 70424533 70424637 -80358916 + MIR SINE MIR 84 190 -72 443 274 47 12 chr11 70424645 70424821 -80358732 - MIR SINE MIR -20 188 10 187 327 144 0 chr11 70424931 70425035 -80358518 - MIR SINE MIR -98 164 46 247 113 38 0 chr11 70425224 70425277 -80358276 + (CCG)n Simple_repeat Simple_repeat 2 56 0 201 196 19 65 chr11 70425369 70425476 -80358077 + (CGGGG)n Simple_repeat Simple_repeat 5 106 0 27 0 0 0 chr11 70427762 70427789 -80355764 + AT_rich Low_complexity Low_complexity 1 27 0 2409 80 0 0 chr11 70427883 70428184 -80355369 + AluSx SINE Alu 1 301 -11 732 170 141 7 chr11 70428752 70428887 -80354666 + FRAM SINE Alu 5 157 -9 1567 228 150 21 chr11 70428889 70429267 -80354286 + L1ME3 LINE L1 5483 5962 -200 1933 161 0 3 chr11 70429267 70429578 -80353975 + AluJo SINE Alu 1 310 -2 1567 228 150 21 chr11 70429578 70429773 -80353780 + L1ME3 LINE L1 5962 6130 -32 517 270 152 66 chr11 70429794 70429928 -80353625 - L2 LINE L2 -1 3312 3191 2256 91 0 3 chr11 70429928 70430224 -80353329 + AluSq SINE Alu 2 296 -17 517 270 152 66 chr11 70430224 70430313 -80353240 - L2 LINE L2 -122 3191 3111 2291 87 0 3 chr11 70430313 70430612 -80352941 - AluSg SINE Alu -12 298 1 517 270 152 66 chr11 70430612 70430735 -80352818 - L2 LINE L2 -202 3111 2935 220 326 55 0 chr11 70431259 70431354 -80352199 - MIR SINE MIR -61 147 73 238 327 103 0 chr11 70431760 70431925 -80351628 + L1MC/D LINE L1 5407 5588 -2197 206 206 55 41 chr11 70432153 70432209 -80351344 + MIR SINE MIR 66 125 -137 2261 115 0 0 chr11 70432209 70432521 -80351032 - AluSx SINE Alu 0 312 1 206 206 55 41 chr11 70432521 70432537 -80351016 + MIR SINE MIR 125 139 -123 354 333 0 0 chr11 70432769 70432859 -80350694 - L1MC4 LINE L1 -1339 6703 6614 334 243 0 59 chr11 70432778 70432888 -80350665 + L1MC4 LINE L1 1995 6983 -1339 * 824 158 8 0 chr11 70432913 70433046 -80350507 - AluJo SINE Alu -178 134 1 2225 93 3 10 chr11 70433056 70433358 -80350195 - AluSp SINE Alu -13 300 1 631 240 20 7 chr11 70433358 70433502 -80350051 + MIR SINE MIR 117 262 0 2183 98 3 0 chr11 70433644 70433962 -80349591 + AluSp SINE Alu 1 313 0 465 215 70 82 chr11 70434154 70434312 -80349241 - L2 LINE L2 0 3313 3158 340 219 61 114 chr11 70434578 70434621 -80348932 + MER5B DNA MER1_type 2 46 -132 2120 105 13 16 chr11 70434621 70434934 -80348619 - AluSx SINE Alu 0 312 1 340 219 61 114 chr11 70434934 70435004 -80348549 + MER5B DNA MER1_type 46 109 -69 417 324 6 6 chr11 70435087 70435263 -80348290 - L1MEc LINE L1 -6185 211 36 257 351 52 26 chr11 70435331 70435485 -80348068 + L2 LINE L2 3111 3268 -4 1961 144 0 0 chr11 70435650 70435941 -80347612 + AluSx SINE Alu 1 291 -21 318 137 0 0 chr11 70435941 70435992 -80347561 + MSTC LTR MaLR 378 428 0 814 179 132 73 chr11 70436231 70436343 -80347210 + AluJo SINE Alu 24 128 -184 2330 93 0 0 chr11 70436343 70436644 -80346909 + AluSc SINE Alu 1 301 -8 814 179 132 73 chr11 70436644 70436804 -80346749 + AluJo SINE Alu 128 312 0 420 266 65 57 chr11 70437156 70437250 -80346303 + L2 LINE L2 1950 2042 -1272 2319 64 3 0 chr11 70437250 70437545 -80346008 - AluY SINE Alu -15 296 1 420 266 65 57 chr11 70437545 70437679 -80345874 + L2 LINE L2 2042 2180 -1134 196 196 59 0 chr11 70437712 70437763 -80345790 + L2 LINE L2 2641 2694 -620 799 150 57 7 chr11 70437902 70438073 -80345480 + FRAM SINE Alu 1 178 0 2044 134 0 13 chr11 70438963 70439268 -80344285 - AluSx SINE Alu -11 301 1 563 217 113 0 chr11 70439301 70439416 -80344137 + FLAM_A SINE Alu 2 129 -4 590 204 0 92 chr11 70439569 70439595 -80343958 + FLAM_C SINE Alu 12 39 -273 2171 109 0 7 chr11 70439595 70439899 -80343654 - AluSq SINE Alu -11 302 1 590 204 0 92 chr11 70439899 70440014 -80343539 + FLAM_C SINE Alu 39 140 -172 2379 96 0 6 chr11 70440024 70440338 -80343215 + AluSx SINE Alu 1 312 0 351 383 101 9 chr11 70440341 70440568 -80342985 + L1ME3 LINE L1 3484 3731 -2415 500 360 76 70 chr11 70440572 70440730 -80342823 + L1ME3 LINE L1 5291 5447 -715 1920 111 30 30 chr11 70440730 70441027 -80342526 + AluSx SINE Alu 1 297 -15 500 360 76 70 chr11 70441027 70441413 -80342140 + L1ME3 LINE L1 5447 5838 -324 2280 101 0 16 chr11 70441419 70441735 -80341818 + AluSx SINE Alu 1 311 -1 745 149 26 0 chr11 70441767 70441881 -80341672 + FLAM_A SINE Alu 10 126 -16 2449 60 0 0 chr11 70441917 70442216 -80341337 - AluY SINE Alu -12 299 1 1941 128 11 4 chr11 70442227 70442532 -80341021 - AluSx SINE Alu 0 307 1 1401 171 3 49 chr11 70442532 70442818 -80340735 + AluJo SINE Alu 26 298 -14 1995 141 0 10 chr11 70442933 70443238 -80340315 - AluJb SINE Alu -8 304 3 2143 123 13 0 chr11 70443313 70443670 -80339883 - AluSx SINE Alu 0 361 1 286 325 149 33 chr11 70443825 70443921 -80339632 + L1MC/D LINE L1 5315 5398 -2410 1575 244 53 28 chr11 70443921 70444351 -80339202 + LTR47B LTR ERVL 1 441 -2 286 325 149 33 chr11 70444351 70444737 -80338816 + L1MC/D LINE L1 5398 5853 -1955 414 0 0 0 chr11 70444809 70444855 -80338698 + (CA)n Simple_repeat Simple_repeat 2 47 0 631 51 0 0 chr11 70444997 70445075 -80338478 - AluS SINE Alu -235 78 1 2120 95 0 10 chr11 70445368 70445662 -80337891 - AluSq SINE Alu -22 291 1 1733 148 7 7 chr11 70445747 70446083 -80337470 - AluJb SINE Alu 0 336 1 2374 54 0 7 chr11 70446129 70446426 -80337127 + AluY SINE Alu 1 295 -16 955 262 282 29 chr11 70446514 70446852 -80336701 - L2 LINE L2 -752 2562 2311 1853 135 0 26 chr11 70446852 70447156 -80336397 + AluJo SINE Alu 17 312 0 955 262 282 29 chr11 70447156 70447199 -80336354 - L2 LINE L2 -1003 2311 2280 2005 94 4 0 chr11 70447199 70447464 -80336089 + AluSg SINE Alu 1 266 -44 955 262 282 29 chr11 70447464 70447868 -80335685 - L2 LINE L2 -1034 2280 1577 583 242 130 24 chr11 70447890 70448250 -80335303 - L2 LINE L2 -197 3116 2702 1717 159 26 10 chr11 70448250 70448552 -80335001 - AluJb SINE Alu -5 307 1 583 242 130 24 chr11 70448552 70448626 -80334927 - L2 LINE L2 -611 2702 2637 835 175 0 0 chr11 70448626 70448763 -80334790 + AluJo SINE Alu 2 138 -174 876 239 184 52 chr11 70448781 70449125 -80334428 - L2 LINE L2 -690 2624 2212 1842 120 51 4 chr11 70449125 70449399 -80334154 + AluJb SINE Alu 1 287 -25 876 239 184 52 chr11 70449399 70449477 -80334076 - L2 LINE L2 -1102 2212 2146 2239 112 0 3 chr11 70449905 70450218 -80333335 + AluSx SINE Alu 1 312 0 399 232 208 48 chr11 70450233 70450440 -80333113 - MIR SINE MIR -21 241 2 232 284 291 7 chr11 70450504 70450652 -80332901 - MIR SINE MIR -71 191 2 23 0 0 0 chr11 70450744 70450767 -80332786 + AT_rich Low_complexity Low_complexity 1 23 0 1712 77 10 117 chr11 70450767 70451066 -80332487 - AluSx SINE Alu -23 289 23 1946 130 10 10 chr11 70451228 70451535 -80332018 - AluSx SINE Alu -5 307 1 188 310 0 60 chr11 70451644 70451744 -80331809 - MIR SINE MIR -71 137 44 638 277 96 5 chr11 70452447 70452635 -80330918 + MIR SINE MIR 55 259 -3 2147 107 3 10 chr11 70452675 70452983 -80330570 - AluSq SINE Alu -7 306 1 518 139 0 10 chr11 70454525 70454626 -80328927 + (TCCA)n Simple_repeat Simple_repeat 3 102 0 1021 150 6 0 chr11 70454777 70454937 -80328616 + FRAM SINE Alu 1 156 -20 2012 146 0 3 chr11 70454944 70455253 -80328300 + AluSx SINE Alu 1 308 -4 1090 175 0 19 chr11 70455254 70455465 -80328088 + AluJo SINE Alu 85 291 -21 2285 88 0 0 chr11 70455673 70455968 -80327585 - AluSg SINE Alu -15 295 1 938 171 5 78 chr11 70455972 70455990 -80327563 - AluJb SINE Alu -17 295 277 1926 133 14 28 chr11 70455990 70456104 -80327449 - L1MA8 LINE L1 -2 6289 6175 2111 117 3 0 chr11 70456104 70456404 -80327149 - AluSg SINE Alu -9 301 1 1926 133 14 28 chr11 70456404 70456642 -80326911 - L1MA8 LINE L1 -116 6175 5942 216 0 0 0 chr11 70456642 70456666 -80326887 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 938 171 5 78 chr11 70456666 70456814 -80326739 - AluJb SINE Alu -34 278 145 2342 70 0 10 chr11 70456814 70457116 -80326437 - AluY SINE Alu -12 299 1 938 171 5 78 chr11 70457116 70457164 -80326389 - AluJb SINE Alu -167 145 95 3551 131 43 43 chr11 70457164 70457768 -80325785 - L1MA8 LINE L1 -342 5949 5346 1633 156 3 31 chr11 70457768 70458108 -80325445 - AluJo SINE Alu 0 336 5 3551 131 43 43 chr11 70458108 70458120 -80325433 - L1MA8 LINE L1 -945 5346 5335 1943 137 0 13 chr11 70458120 70458420 -80325133 - AluSx SINE Alu -16 296 1 3551 131 43 43 chr11 70458420 70458679 -80324874 - L1MA8 LINE L1 -956 5335 5058 383 38 19 0 chr11 70458683 70458736 -80324817 + (TG)n Simple_repeat Simple_repeat 1 54 0 1003 183 0 6 chr11 70458737 70458912 -80324641 - AluJb SINE Alu -34 278 105 689 130 20 0 chr11 70458991 70459091 -80324462 - AluJb SINE Alu -209 103 2 950 116 12 0 chr11 70459094 70459267 -80324286 - L1MA8 LINE L1 -1443 4703 4529 2191 131 0 0 chr11 70459284 70459597 -80323956 - AluSq SINE Alu 0 313 1 234 279 59 0 chr11 70460131 70460199 -80323354 - MIR SINE MIR -123 139 68 2474 40 3 3 chr11 70460429 70460731 -80322822 - AluY SINE Alu -9 302 1 1718 215 42 44 chr11 70460774 70461184 -80322369 - LTR2 LTR ERV1 0 449 41 285 320 0 13 chr11 70461317 70461395 -80322158 - MIR SINE MIR -171 91 15 1465 169 86 0 chr11 70461875 70462142 -80321411 + AluJo SINE Alu 14 303 -9 476 287 148 14 chr11 70462698 70462921 -80320632 + MIR SINE MIR 4 256 -6 183 259 0 19 chr11 70463645 70463699 -80319854 - MIR SINE MIR -15 247 195 415 321 22 0 chr11 70463957 70464094 -80319459 + L2 LINE L2 298 437 -2877 358 314 180 20 chr11 70464127 70464372 -80319181 + L2 LINE L2 989 1272 -2042 198 0 0 0 chr11 70464572 70464594 -80318959 + (T)n Simple_repeat Simple_repeat 1 22 0 877 101 36 89 chr11 70464771 70464865 -80318688 + MSTA LTR MaLR 268 365 -63 185 0 0 39 chr11 70464865 70464891 -80318662 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 2089 71 4 4 chr11 70464891 70465160 -80318393 - AluY SINE Alu -42 269 1 877 101 36 89 chr11 70465160 70465232 -80318321 + MSTA LTR MaLR 363 426 -2 1930 121 10 3 chr11 70465302 70465592 -80317961 - AluSx SINE Alu -20 292 1 1924 122 27 10 chr11 70466177 70466471 -80317082 + AluJo SINE Alu 1 299 -13 451 349 7 13 chr11 70466472 70466621 -80316932 - MER91B DNA MER1_type 0 190 43 344 259 214 0 chr11 70466691 70466803 -80316750 - MIR SINE MIR -118 144 9 191 279 64 79 chr11 70466835 70466975 -80316578 + L2 LINE L2 3174 3311 -2 1978 164 113 8 chr11 70467254 70467645 -80315908 + MSTB1 LTR MaLR 1 432 0 2133 103 7 0 chr11 70467662 70467954 -80315599 + AluSx SINE Alu 1 294 -18 541 262 220 5 chr11 70468447 70468661 -80314892 + MIR SINE MIR 2 261 -1 219 220 60 0 chr11 70469002 70469052 -80314501 + L2 LINE L2 3199 3251 -62 535 237 58 39 chr11 70469707 70469863 -80313690 + MIR SINE MIR 40 198 -64 1843 134 10 7 chr11 70469903 70470194 -80313359 - AluSq SINE Alu -21 292 1 1785 134 18 0 chr11 70470225 70470502 -80313051 - AluSx SINE Alu -20 292 11 366 286 40 40 chr11 70470607 70470627 -80312926 - MIR SINE MIR -42 220 201 2016 141 3 10 chr11 70470627 70470939 -80312614 - AluSx SINE Alu -2 310 1 366 286 40 40 chr11 70470939 70471044 -80312509 - MIR SINE MIR -60 202 95 197 380 83 0 chr11 70471206 70471327 -80312226 - L2 LINE L2 -21 3251 3121 1958 104 49 29 chr11 70471334 70471641 -80311912 + AluSq SINE Alu 1 313 0 263 242 0 125 chr11 70471641 70471761 -80311792 + Charlie6 DNA MER1_type 1180 1284 -2216 234 279 59 0 chr11 70472048 70472116 -80311437 - MIR SINE MIR -123 139 68 2426 48 0 32 chr11 70472346 70472658 -80310895 - AluY SINE Alu -9 302 1 1542 115 0 5 chr11 70472800 70473018 -80310535 + AluSg/x SINE Alu 80 296 -14 496 262 79 26 chr11 70473029 70473258 -80310295 - LTR43 LTR ERV1 -173 429 189 2110 108 0 23 chr11 70473506 70473812 -80309741 + AluSx SINE Alu 1 299 -13 275 275 75 0 chr11 70473950 70474030 -80309523 - MIR SINE MIR -126 136 51 2446 62 3 0 chr11 70474317 70474622 -80308931 - AluSp SINE Alu -7 306 1 234 193 0 35 chr11 70474629 70474686 -80308867 - MIR SINE MIR -52 156 102 1810 134 4 7 chr11 70474738 70475014 -80308539 - AluSx SINE Alu -37 275 1 1801 106 0 0 chr11 70475345 70475590 -80307963 - AluSc SINE Alu -20 289 45 223 196 0 20 chr11 70475919 70475970 -80307583 + CT-rich Low_complexity Low_complexity 1 50 0 1820 140 32 0 chr11 70476151 70476430 -80307123 - AluJb SINE Alu -24 288 1 232 322 33 11 chr11 70477632 70477722 -80305831 - MIR SINE MIR -110 152 61 298 264 76 49 chr11 70477803 70477947 -80305606 - MIR SINE MIR -80 182 35 2398 74 0 0 chr11 70478594 70478890 -80304663 - AluSc SINE Alu -13 296 1 1665 131 0 76 chr11 70479077 70479417 -80304136 + AluJb SINE Alu 1 316 0 1594 139 62 7 chr11 70480027 70480300 -80303253 + AluJb SINE Alu 11 298 -14 2134 129 0 0 chr11 70480304 70480614 -80302939 + AluSx SINE Alu 3 312 0 392 344 81 0 chr11 70480626 70480812 -80302741 + L1M4 LINE L1 3336 3536 -2610 408 334 127 27 chr11 70481100 70481432 -80302121 + L1M4 LINE L1 3884 4248 -1898 1598 140 13 68 chr11 70481713 70482020 -80301533 + AluJo SINE Alu 5 294 -18 1399 94 16 0 chr11 70482022 70482214 -80301339 + AluSg/x SINE Alu 101 295 -15 271 333 20 7 chr11 70482217 70482306 -80301247 + L1M4 LINE L1 4784 4877 -1269 2438 57 0 3 chr11 70482306 70482606 -80300947 + AluY SINE Alu 1 299 -12 271 333 20 7 chr11 70482606 70482666 -80300887 + L1M4 LINE L1 4877 4935 -1211 187 191 32 0 chr11 70482768 70482831 -80300722 + (TA)n Simple_repeat Simple_repeat 2 66 0 226 307 30 50 chr11 70482856 70482957 -80300596 - L2 LINE L2 -1546 1768 1670 1019 111 0 0 chr11 70483103 70483238 -80300315 + AluSq/x SINE Alu 1 135 -178 1961 125 3 7 chr11 70483238 70483541 -80300012 + AluSx SINE Alu 1 302 -10 198 0 0 0 chr11 70483649 70483671 -80299882 + (A)n Simple_repeat Simple_repeat 1 22 0 1717 164 14 0 chr11 70483677 70483964 -80299589 + AluSx SINE Alu 1 291 -21 2272 79 0 22 chr11 70484032 70484349 -80299204 + AluY SINE Alu 1 310 -1 1547 153 7 18 chr11 70484381 70484663 -80298890 - AluJb SINE Alu -10 302 24 1166 193 40 8 chr11 70484696 70484945 -80298608 - AluJo SINE Alu -9 303 47 251 328 16 41 chr11 70485120 70485242 -80298311 - L2 LINE L2 -1810 1504 1386 221 290 75 21 chr11 70486632 70486725 -80296828 + MIR SINE MIR 47 144 -118 248 51 0 26 chr11 70487591 70487630 -80295923 + (CCCCAG)n Simple_repeat Simple_repeat 3 40 0 195 114 0 0 chr11 70488218 70488253 -80295300 + (GGGTG)n Simple_repeat Simple_repeat 5 39 0 1802 166 7 0 chr11 70489115 70489411 -80294142 + AluJb SINE Alu 1 298 -14 1521 160 44 38 chr11 70489771 70489919 -80293634 + AluSx SINE Alu 1 146 -166 2498 53 0 0 chr11 70489919 70490219 -80293334 + AluY SINE Alu 1 300 -11 1521 160 44 38 chr11 70490219 70490363 -80293190 + AluSx SINE Alu 146 295 -17 286 330 119 5 chr11 70492187 70492381 -80291172 - L1MC4 LINE L1 -133 7909 7694 1511 169 34 4 chr11 70493670 70493936 -80289617 - AluJo SINE Alu -16 296 23 22 0 0 0 chr11 70494095 70494117 -80289436 + AT_rich Low_complexity Low_complexity 1 22 0 1679 144 57 13 chr11 70494177 70494476 -80289077 + AluJo SINE Alu 1 312 0 268 178 14 41 chr11 70494477 70494550 -80289003 + L1MC5 LINE L1 7843 7913 -48 684 178 282 23 chr11 70494598 70494720 -80288833 + L1ME3A LINE L1 5651 5740 -430 1327 149 43 70 chr11 70494720 70495021 -80288532 + AluJo SINE Alu 1 293 -19 684 178 282 23 chr11 70495021 70495157 -80288396 + L1ME3A LINE L1 5740 5976 -194 1607 185 7 7 chr11 70495159 70495451 -80288102 + AluJb SINE Alu 1 292 -20 2464 59 0 0 chr11 70495495 70495801 -80287752 + AluY SINE Alu 1 306 -5 2025 120 7 3 chr11 70496078 70496370 -80287183 + AluSx SINE Alu 6 298 -14 1806 83 0 4 chr11 70497123 70497364 -80286189 + AluSq SINE Alu 1 240 -73 2208 91 3 0 chr11 70497827 70498125 -80285428 + AluSp SINE Alu 1 299 -14 2110 85 13 23 chr11 70498749 70499054 -80284499 - AluSx SINE Alu -10 302 1 2107 107 0 16 chr11 70499397 70499714 -80283839 + AluSx SINE Alu 1 312 0 24 0 0 0 chr11 70499714 70499738 -80283815 + AT_rich Low_complexity Low_complexity 1 24 0 721 211 0 23 chr11 70499950 70500083 -80283470 - FLAM_A SINE Alu -3 130 1 2188 99 3 10 chr11 70500100 70500430 -80283123 + AluSx SINE Alu 1 312 0 720 314 106 34 chr11 70500478 70500776 -80282777 + L1M4 LINE L1 3081 3356 -2790 2159 95 0 0 chr11 70500776 70501082 -80282471 + AluSx SINE Alu 1 306 0 720 314 106 34 chr11 70501082 70501550 -80282003 + L1M4 LINE L1 3356 3903 -2243 331 326 140 25 chr11 70502015 70502251 -80281302 + L1 LINE L1 2865 3127 -3019 2168 96 0 3 chr11 70502517 70502808 -80280745 - AluSg SINE Alu -20 290 1 193 156 0 0 chr11 70502886 70502931 -80280622 - L2 LINE L2 -334 2979 2935 209 238 42 16 chr11 70503455 70503535 -80280018 - MIR SINE MIR -61 147 88 273 327 103 0 chr11 70503956 70504121 -80279432 + L1MC4 LINE L1 5407 5588 -2197 209 206 55 41 chr11 70504349 70504405 -80279148 + MIR SINE MIR 66 125 -137 2230 115 0 0 chr11 70504405 70504717 -80278836 - AluSx SINE Alu 0 312 1 209 206 55 41 chr11 70504717 70504733 -80278820 + MIR SINE MIR 125 139 -123 216 241 0 0 chr11 70504964 70505043 -80278510 + (TA)n Simple_repeat Simple_repeat 2 80 0 226 196 0 0 chr11 70505046 70505097 -80278456 + L1MC4 LINE L1 6653 6703 -1339 809 141 8 0 chr11 70505112 70505240 -80278313 - FLAM_C SINE Alu -14 129 1 2182 96 3 10 chr11 70505250 70505552 -80278001 - AluSp SINE Alu -13 300 1 618 240 20 7 chr11 70505552 70505696 -80277857 + MIR SINE MIR 117 262 0 2154 98 3 0 chr11 70505838 70506156 -80277397 + AluSp SINE Alu 1 313 0 442 206 71 84 chr11 70506348 70506503 -80277050 - L2 LINE L2 0 3313 3161 334 219 61 114 chr11 70506770 70506813 -80276740 + MER5B DNA MER1_type 2 46 -132 2095 105 13 16 chr11 70506813 70507126 -80276427 - AluSx SINE Alu 0 312 1 334 219 61 114 chr11 70507126 70507196 -80276357 + MER5B DNA MER1_type 46 109 -69 461 324 6 6 chr11 70507279 70507455 -80276098 - L1MEc LINE L1 -6185 211 36 232 344 53 26 chr11 70507523 70507674 -80275879 + L2 LINE L2 3111 3265 -7 1921 135 0 0 chr11 70507842 70508123 -80275430 + AluSx SINE Alu 1 281 -31 369 125 0 0 chr11 70508128 70508184 -80275369 + MSTC LTR MaLR 373 428 0 617 168 0 9 chr11 70508423 70508530 -80275023 + FLAM_A SINE Alu 23 128 -14 2293 94 0 0 chr11 70508535 70508834 -80274719 + AluSc SINE Alu 1 299 -10 805 119 8 16 chr11 70508848 70508974 -80274579 + AluJo SINE Alu 11 135 -177 31 0 0 0 chr11 70508974 70509005 -80274548 + AT_rich Low_complexity Low_complexity 1 31 0 372 198 33 11 chr11 70509345 70509436 -80274117 + L2 LINE L2 1950 2042 -1272 2411 54 0 0 chr11 70509439 70509735 -80273818 - AluY SINE Alu -15 296 1 1734 148 7 7 chr11 70509781 70510117 -80273436 + AluJb SINE Alu 1 336 0 2120 95 0 10 chr11 70510202 70510496 -80273057 + AluSq SINE Alu 1 291 -22 628 52 0 0 chr11 70510790 70510867 -80272686 + AluS SINE Alu 2 78 -235 396 0 0 0 chr11 70511009 70511053 -80272500 + (TG)n Simple_repeat Simple_repeat 2 45 0 377 317 151 35 chr11 70511125 70511511 -80272042 - L1MC4a LINE L1 -1955 5853 5398 1553 242 53 28 chr11 70511511 70511941 -80271612 - LTR47B LTR ERVL -2 441 1 377 317 151 35 chr11 70511941 70512037 -80271516 - L1MC4a LINE L1 -2410 5398 5315 2129 120 13 0 chr11 70512192 70512549 -80271004 + AluSx SINE Alu 1 361 0 1957 141 0 10 chr11 70512624 70512929 -80270624 + AluJb SINE Alu 3 304 -8 1364 171 3 49 chr11 70513044 70513330 -80270223 - AluJo SINE Alu -14 298 26 1911 128 11 4 chr11 70513330 70513635 -80269918 + AluSx SINE Alu 1 307 0 744 82 10 0 chr11 70513647 70513744 -80269809 + AluY SINE Alu 2 99 -212 805 195 32 37 chr11 70513872 70514062 -80269491 + AluSq SINE Alu 121 309 -4 2233 97 0 0 chr11 70514066 70514393 -80269160 + AluY SINE Alu 1 327 0 542 208 123 0 chr11 70514419 70514549 -80269004 - MIR SINE MIR -57 205 60 347 295 29 0 chr11 70514676 70514781 -80268772 + MIR3 SINE MIR 62 169 -39 292 328 0 0 chr11 70515781 70515915 -80267638 + (CCA)n Simple_repeat Simple_repeat 3 136 0 2230 103 0 6 chr11 70516797 70517109 -80266444 + AluSx SINE Alu 1 310 -2 1967 151 0 6 chr11 70517111 70517422 -80266131 + AluSx SINE Alu 1 309 -3 692 133 0 0 chr11 70517715 70517813 -80265740 - AluS SINE Alu -214 99 2 201 268 90 0 chr11 70517817 70517916 -80265637 - MIR SINE MIR -63 145 38 1149 98 0 0 chr11 70518053 70518206 -80265347 + AluSq SINE Alu 67 219 -94 279 262 60 0 chr11 70518939 70519023 -80264530 - MIR SINE MIR -32 230 142 189 0 0 0 chr11 70519023 70519044 -80264509 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 1972 87 22 4 chr11 70519044 70519319 -80264234 - AluSx SINE Alu -32 280 1 2087 110 0 16 chr11 70519671 70519988 -80263565 + AluSx SINE Alu 1 312 0 24 0 0 0 chr11 70519988 70520012 -80263541 + AT_rich Low_complexity Low_complexity 1 24 0 721 211 0 23 chr11 70520224 70520357 -80263196 - FLAM_A SINE Alu -3 130 1 2188 99 3 10 chr11 70520374 70520704 -80262849 + AluSx SINE Alu 1 312 0 720 314 106 34 chr11 70520752 70521050 -80262503 + L1M4 LINE L1 3081 3356 -2790 2159 95 0 0 chr11 70521050 70521356 -80262197 + AluSx SINE Alu 1 306 0 720 314 106 34 chr11 70521356 70521824 -80261729 + L1M4 LINE L1 3356 3903 -2243 468 269 120 44 chr11 70522289 70522584 -80260969 + L1M4 LINE L1 2865 3174 -2972 1672 139 0 89 chr11 70522781 70523118 -80260435 - AluSx SINE Alu -5 307 1 2327 92 0 0 chr11 70523149 70523452 -80260101 + AluSx SINE Alu 1 303 -9 311 279 47 12 chr11 70523452 70523538 -80260015 - MLT1K LTR MaLR -409 179 91 397 290 53 23 chr11 70523539 70523670 -80259883 - MLT1K LTR MaLR -441 147 13 1636 90 4 37 chr11 70524487 70524732 -80258821 - AluSg/x SINE Alu 0 312 76 283 248 16 24 chr11 70527112 70527237 -80256316 + (TG)n Simple_repeat Simple_repeat 1 124 0 1602 109 0 9 chr11 70527280 70527510 -80256043 - AluSg/x SINE Alu 0 312 85 2529 36 0 0 chr11 70527510 70527813 -80255740 - AluY SINE Alu -4 307 5 1586 147 59 7 chr11 70527820 70528093 -80255460 - AluJb SINE Alu -15 297 11 2196 79 7 10 chr11 70528337 70528640 -80254913 - AluY SINE Alu -9 302 1 189 254 104 0 chr11 70528649 70528716 -80254837 - MIR SINE MIR -109 153 80 872 155 0 0 chr11 70529240 70529382 -80254171 - FLAM_C SINE Alu -1 142 1 535 275 28 33 chr11 70529388 70529570 -80253983 + MIR SINE MIR 12 192 -70 323 342 50 40 chr11 70529671 70529972 -80253581 + L2 LINE L2 2884 3187 -85 606 103 0 0 chr11 70531390 70531468 -80252085 + AluS SINE Alu 16 93 -220 2392 43 0 13 chr11 70531469 70531772 -80251781 + AluY SINE Alu 1 299 -12 187 191 32 0 chr11 70531934 70531997 -80251556 + (TA)n Simple_repeat Simple_repeat 2 66 0 226 307 30 50 chr11 70532022 70532123 -80251430 - L2 LINE L2 -1546 1768 1670 1006 118 0 0 chr11 70532269 70532404 -80251149 + AluSq/x SINE Alu 1 135 -178 2045 127 0 3 chr11 70532404 70532711 -80250842 + AluSx SINE Alu 1 306 -6 4796 19 37 0 chr11 70532850 70533388 -80250165 + SVA Other Other 821 1378 -8 774 161 0 0 chr11 70533388 70533506 -80250047 - FLAM_C SINE Alu -15 118 1 1950 154 32 14 chr11 70533506 70533850 -80249703 - L1PA16 LINE L1 0 6166 5817 184 200 296 24 chr11 70534236 70534361 -80249192 - MIR SINE MIR -9 253 95 261 351 43 0 chr11 70534391 70534485 -80249068 - MIR SINE MIR -148 114 17 2283 93 3 0 chr11 70534507 70534807 -80248746 + AluSq SINE Alu 5 305 -8 630 297 128 34 chr11 70538005 70538482 -80245071 - L2 LINE L2 -14 3299 2868 2155 89 4 0 chr11 70538482 70538797 -80244756 - AluSx SINE Alu 0 317 2 188 86 29 0 chr11 70538797 70538832 -80244721 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 1531 168 14 25 chr11 70538833 70539119 -80244434 - AluJo SINE Alu -29 283 1 2070 125 26 0 chr11 70539129 70539432 -80244121 - AluSq SINE Alu -2 311 1 630 297 128 34 chr11 70539432 70539501 -80244052 - L2 LINE L2 -453 2860 2646 1801 141 7 4 chr11 70539501 70539778 -80243775 + AluJo SINE Alu 14 291 -21 1782 157 7 3 chr11 70539784 70540070 -80243483 + AluJo SINE Alu 3 289 -23 2480 34 0 3 chr11 70540997 70541295 -80242258 + AluY SINE Alu 1 297 -14 636 235 114 33 chr11 70541352 70541684 -80241869 + LTR37B LTR ERV1 110 468 0 2028 121 0 10 chr11 70541839 70542144 -80241409 + AluSx SINE Alu 1 302 -10 1895 148 3 6 chr11 70542245 70542556 -80240997 + AluSx SINE Alu 1 310 -2 359 231 0 0 chr11 70542564 70542629 -80240924 - Tigger3(Golem) DNA MER2_type -2964 65 1 306 270 9 18 chr11 70542629 70542740 -80240813 + (TA)n Simple_repeat Simple_repeat 1 110 0 971 217 0 49 chr11 70542762 70542824 -80240729 + AluJo SINE Alu 77 141 -171 2380 77 0 0 chr11 70542824 70543124 -80240429 + AluSx SINE Alu 1 300 -12 971 217 0 49 chr11 70543124 70543305 -80240248 + AluJo SINE Alu 141 308 -4 1168 164 0 10 chr11 70543398 70543593 -80239960 - AluJo SINE Alu -31 281 89 2094 107 10 10 chr11 70543606 70543915 -80239638 - AluSc SINE Alu 0 309 1 2346 81 0 3 chr11 70544005 70544303 -80239250 - AluSq SINE Alu -16 297 1 261 0 0 0 chr11 70544392 70544421 -80239132 + (CA)n Simple_repeat Simple_repeat 1 29 0 2182 120 3 0 chr11 70545552 70545861 -80237692 + AluSx SINE Alu 1 310 -2 779 122 0 72 chr11 70546397 70546523 -80237030 + FLAM_C SINE Alu 2 135 -167 195 42 0 0 chr11 70546523 70546547 -80237006 + (TA)n Simple_repeat Simple_repeat 2 25 0 2052 78 10 34 chr11 70546547 70546841 -80236712 - AluSq SINE Alu -26 287 1 779 122 0 72 chr11 70546841 70546852 -80236701 + FLAM_C SINE Alu 120 130 -172 2229 91 0 0 chr11 70546858 70547144 -80236409 - AluSc SINE Alu -23 286 1 24 0 0 0 chr11 70547146 70547170 -80236383 + AT_rich Low_complexity Low_complexity 1 24 0 2140 98 0 7 chr11 70547173 70547468 -80236085 + AluSq SINE Alu 1 293 -20 804 181 50 6 chr11 70547476 70547670 -80235883 + AluJb SINE Alu 134 312 0 527 212 73 0 chr11 70547922 70548073 -80235480 - L1MD2 LINE L1 -25 6334 6173 180 0 0 0 chr11 70548073 70548093 -80235460 + (T)n Simple_repeat Simple_repeat 1 20 0 1961 90 4 11 chr11 70548201 70548468 -80235085 - AluSg SINE Alu -45 265 1 605 134 8 60 chr11 70548512 70548604 -80234949 - L1M4 LINE L1 -857 5289 5205 2142 111 3 0 chr11 70548604 70548901 -80234652 - AluSg SINE Alu -12 298 1 605 134 8 60 chr11 70548901 70548942 -80234611 - L1M4 LINE L1 -941 5205 5163 1044 157 44 10 chr11 70548942 70549146 -80234407 - AluJo SINE Alu -8 304 94 1856 88 0 4 chr11 70549146 70549396 -80234157 + AluSp SINE Alu 47 295 -18 435 241 9 0 chr11 70549397 70549513 -80234040 - L1M4 LINE L1 -1247 4899 4783 189 0 0 0 chr11 70549516 70549537 -80234016 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1641 143 11 29 chr11 70549537 70549810 -80233743 - AluJo SINE Alu -36 276 9 22 35 0 0 chr11 70549831 70549860 -80233693 + AT_rich Low_complexity Low_complexity 1 29 0 1568 98 71 24 chr11 70549999 70550254 -80233299 - AluSg SINE Alu 0 310 44 230 174 22 0 chr11 70550255 70550301 -80233252 - L1M4 LINE L1 -1353 4793 4747 944 128 0 0 chr11 70550302 70550435 -80233118 - FLAM_C SINE Alu 0 133 1 1827 123 0 58 chr11 70550446 70550618 -80232935 - AluSx SINE Alu -17 295 147 2226 96 0 13 chr11 70550618 70550931 -80232622 - AluSc SINE Alu 0 309 1 1827 123 0 58 chr11 70550931 70551067 -80232486 - AluSx SINE Alu -165 147 5 1178 128 0 17 chr11 70551083 70551246 -80232307 - AluSq SINE Alu -17 296 135 2398 73 0 0 chr11 70551246 70551546 -80232007 - AluSq SINE Alu -13 300 1 1178 128 0 17 chr11 70551546 70551562 -80231991 - AluSq SINE Alu -178 135 120 844 209 94 51 chr11 70551562 70551912 -80231641 - L1M4 LINE L1 -1401 4745 4381 929 143 0 50 chr11 70551931 70552113 -80231440 - FRAM SINE Alu -9 167 1 724 200 7 21 chr11 70552153 70552298 -80231255 - FLAM_C SINE Alu 0 143 1 260 226 29 29 chr11 70552298 70552400 -80231153 - L1M4 LINE L1 -1765 4381 4280 1418 148 141 0 chr11 70552402 70552658 -80230895 - AluSx SINE Alu -18 294 3 1101 66 0 0 chr11 70552659 70552795 -80230758 - AluSq/x SINE Alu -176 136 1 360 219 83 21 chr11 70552890 70552986 -80230567 + MLT1F LTR MaLR 1 102 -440 1845 139 0 20 chr11 70553036 70553330 -80230223 + AluSx SINE Alu 11 298 -14 1899 180 63 63 chr11 70553363 70553509 -80230044 - MER74A LTR ERVL -37 521 376 2235 82 3 7 chr11 70553509 70553813 -80229740 - AluSc SINE Alu 0 309 7 1899 180 63 63 chr11 70553813 70554187 -80229366 - MER74A LTR ERVL -181 377 1 998 209 140 104 chr11 70554187 70554481 -80229072 + MLT1F LTR MaLR 99 414 -128 2158 109 3 6 chr11 70554481 70554794 -80228759 + AluSq SINE Alu 1 312 -1 998 209 140 104 chr11 70554794 70554920 -80228633 + MLT1F LTR MaLR 414 534 -8 224 325 50 0 chr11 70554935 70555015 -80228538 - MIR SINE MIR -62 146 63 182 225 0 0 chr11 70555033 70555073 -80228480 + L2 LINE L2 3266 3305 -8 2099 112 0 13 chr11 70555142 70555455 -80228098 + AluSc SINE Alu 1 309 0 336 305 238 0 chr11 70555559 70555861 -80227692 - L2 LINE L2 -1 3312 2939 752 200 154 69 chr11 70556417 70556807 -80226746 - L1M4 LINE L1 -1399 4747 4325 1464 140 103 15 chr11 70556807 70557079 -80226474 - AluJo SINE Alu -13 299 4 2356 91 0 0 chr11 70557081 70557388 -80226165 - AluSp SINE Alu -6 307 1 590 134 0 0 chr11 70557389 70557471 -80226082 - AluS SINE Alu -231 82 1 1997 76 4 0 chr11 70558339 70558601 -80224952 + AluSp SINE Alu 3 265 -48 884 186 37 11 chr11 70558726 70558914 -80224639 + AluJb SINE Alu 120 312 0 550 207 148 18 chr11 70558921 70559090 -80224463 - L2 LINE L2 -14 3299 3109 2301 56 0 11 chr11 70559090 70559376 -80224177 + AluY SINE Alu 1 283 -28 2215 75 0 29 chr11 70559510 70559818 -80223735 + AluY SINE Alu 3 301 -10 2336 84 0 0 chr11 70559927 70560236 -80223317 + AluSc SINE Alu 1 309 0 231 143 48 0 chr11 70560236 70560278 -80223275 - U7 snRNA snRNA -18 45 2 444 302 188 5 chr11 70563003 70563195 -80220358 + MIR SINE MIR 28 254 -8 2174 116 0 0 chr11 70564698 70565000 -80218553 + AluSq SINE Alu 1 302 -11 673 123 0 38 chr11 70566565 70566671 -80216882 - FRAM SINE Alu -16 160 59 2340 71 10 3 chr11 70567145 70567453 -80216100 - AluSg SINE Alu 0 310 1 369 138 0 103 chr11 70567483 70567599 -80215954 + AluY SINE Alu 2 105 -196 452 239 17 8 chr11 70567802 70567919 -80215634 - LTR37B LTR ERV1 -151 317 200 186 263 35 0 chr11 70568190 70568247 -80215306 + L2 LINE L2 1224 1282 -2032 2183 98 13 3 chr11 70568248 70568555 -80214998 - AluSq SINE Alu 0 313 4 905 79 0 0 chr11 70568557 70568671 -80214882 - AluSq/x SINE Alu -175 137 24 3918 261 78 25 chr11 70568682 70569138 -80214415 + L2 LINE L2 1279 1709 -1605 2176 93 0 0 chr11 70569138 70569428 -80214125 + AluSc SINE Alu 1 290 -19 3918 261 78 25 chr11 70569428 70569668 -80213885 + L2 LINE L2 1709 1935 -1379 1722 174 13 0 chr11 70569668 70569966 -80213587 - AluJb SINE Alu -10 302 1 3918 261 78 25 chr11 70569966 70570595 -80212958 + L2 LINE L2 1935 2676 -638 291 281 184 9 chr11 70570578 70570692 -80212861 + L2 LINE L2 3175 3308 -5 * 513 303 138 9 chr11 70570957 70571115 -80212438 + MIR SINE MIR 2 201 -61 2159 96 7 0 chr11 70571115 70571407 -80212146 + AluSg SINE Alu 1 294 -16 513 303 138 9 chr11 70571407 70571479 -80212074 + MIR SINE MIR 201 262 0 1907 127 7 7 chr11 70571852 70572152 -80211401 + AluSx SINE Alu 1 300 -12 194 0 0 37 chr11 70572414 70572441 -80211112 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1931 135 6 28 chr11 70572701 70573020 -80210533 - AluJb SINE Alu 0 312 1 1453 166 63 36 chr11 70573051 70573353 -80210200 + AluSx SINE Alu 1 310 -2 362 157 14 14 chr11 70573358 70573428 -80210125 + MER58 DNA MER1_type 2347 2416 -4 322 270 35 61 chr11 70573689 70573804 -80209749 - MER5B DNA MER1_type -36 142 31 22 0 0 0 chr11 70575716 70575738 -80207815 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr11 70576966 70576993 -80206560 + (A)n Simple_repeat Simple_repeat 1 27 0 226 280 111 19 chr11 70577003 70577187 -80206366 + L2 LINE L2 2751 2963 -309 2114 110 3 16 chr11 70577351 70577668 -80205885 + AluSp SINE Alu 1 313 0 234 380 16 16 chr11 70577681 70577802 -80205751 + L2 LINE L2 3193 3313 0 2284 78 3 3 chr11 70578014 70578310 -80205243 - AluSp SINE Alu -17 296 1 2281 84 10 0 chr11 70578346 70578656 -80204897 + AluSp SINE Alu 1 313 0 1841 128 7 10 chr11 70578664 70578962 -80204591 + AluSq SINE Alu 1 297 -16 5810 179 29 7 chr11 70578966 70579854 -80203699 + Charlie8 DNA MER1_type 151 1069 -1348 2155 83 23 20 chr11 70579854 70580156 -80203397 + AluY SINE Alu 1 303 -8 5810 179 29 7 chr11 70580156 70580350 -80203203 + Charlie8 DNA MER1_type 1069 1257 -1160 2110 105 0 7 chr11 70580352 70580658 -80202895 + AluSx SINE Alu 1 304 -8 1263 124 5 0 chr11 70580658 70580843 -80202710 + AluSp SINE Alu 108 293 -20 2031 126 14 0 chr11 70582254 70582547 -80201006 + AluSx SINE Alu 1 297 -15 1963 143 3 3 chr11 70583624 70583925 -80199628 + AluSx SINE Alu 1 301 -11 2208 99 0 7 chr11 70586962 70587265 -80196288 + AluSx SINE Alu 1 301 -11 2400 75 0 0 chr11 70587939 70588247 -80195306 - AluY SINE Alu -3 308 1 1153 167 77 13 chr11 70589985 70590009 -80193544 - L1MB7 LINE L1 -31 6153 6132 2141 87 0 0 chr11 70590009 70590285 -80193268 - AluSx SINE Alu -32 280 5 1153 167 77 13 chr11 70590285 70590494 -80193059 - L1MB7 LINE L1 -52 6132 5905 1773 132 41 0 chr11 70590499 70590765 -80192788 - AluSq SINE Alu -19 294 18 639 96 0 0 chr11 70590765 70590848 -80192705 - AluS SINE Alu -228 84 2 2056 106 3 0 chr11 70590869 70591179 -80192374 - AluSx SINE Alu 0 311 1 952 196 111 0 chr11 70591179 70591414 -80192139 - L1MB7 LINE L1 -292 5892 5632 261 325 0 12 chr11 70591434 70591517 -80192036 + GA-rich Low_complexity Low_complexity 5 86 0 1598 162 63 0 chr11 70593024 70593308 -80190245 - AluJb SINE Alu -10 302 1 2405 42 0 75 chr11 70593358 70593692 -80189861 + AluY SINE Alu 1 309 -2 1022 177 76 72 chr11 70593692 70593820 -80189733 + MLT1D LTR MaLR 88 214 -291 2080 114 0 26 chr11 70593820 70594126 -80189427 + AluSg SINE Alu 1 298 -12 1022 177 76 72 chr11 70594126 70594320 -80189233 + MLT1D LTR MaLR 214 402 -103 1512 148 31 82 chr11 70594330 70594498 -80189055 - AluSq SINE Alu -11 302 156 1854 98 76 4 chr11 70594498 70594774 -80188779 - AluSc SINE Alu -11 298 3 1512 148 31 82 chr11 70594774 70594923 -80188630 - AluSq SINE Alu -157 156 1 1910 116 34 0 chr11 70594923 70595217 -80188336 - AluSg SINE Alu -6 304 1 920 130 0 0 chr11 70595222 70595353 -80188200 - AluJb SINE Alu -181 131 1 1476 121 48 4 chr11 70595360 70595608 -80187945 - L1MB3 LINE L1 0 6183 5925 1939 136 33 12 chr11 70595610 70595941 -80187612 - L1MB3 LINE L1 -308 5875 5538 2172 119 0 3 chr11 70595949 70596261 -80187292 - AluSq SINE Alu -2 311 1 2289 83 0 7 chr11 70596803 70597103 -80186450 + AluSx SINE Alu 2 299 -13 2215 88 0 20 chr11 70597400 70597706 -80185847 + AluSx SINE Alu 1 300 -12 1946 106 33 4 chr11 70597943 70598217 -80185336 + AluSq SINE Alu 13 294 -19 1316 177 42 35 chr11 70598236 70598519 -80185034 + AluJo SINE Alu 3 287 -25 763 200 7 14 chr11 70598536 70598681 -80184872 + AluJb SINE Alu 132 275 -37 2296 99 0 0 chr11 70598717 70599029 -80184524 + AluSx SINE Alu 1 312 0 2175 89 17 3 chr11 70599142 70599444 -80184109 + AluSg SINE Alu 1 306 -4 528 338 64 19 chr11 70599905 70600171 -80183382 - ERVL LTR ERVL -615 5149 4872 2114 113 3 3 chr11 70600289 70600598 -80182955 - AluSx SINE Alu -3 309 1 412 171 24 49 chr11 70600598 70600680 -80182873 + L1ME LINE L1 5700 5771 -399 1113 183 92 18 chr11 70600716 70600945 -80182608 + AluJb SINE Alu 1 246 -66 468 188 21 10 chr11 70601209 70601305 -80182248 + MIR3 SINE MIR 89 185 -23 2434 36 0 29 chr11 70601334 70601641 -80181912 + AluY SINE Alu 1 298 -13 1178 91 0 0 chr11 70601641 70601795 -80181758 + AluSg/x SINE Alu 134 287 -25 30 0 0 0 chr11 70601803 70601833 -80181720 + AT_rich Low_complexity Low_complexity 1 30 0 1548 161 3 25 chr11 70601833 70602118 -80181435 - AluJo SINE Alu -33 279 1 1969 117 3 0 chr11 70602188 70602494 -80181059 - AluSx SINE Alu 0 307 1 1643 143 47 27 chr11 70602502 70602803 -80180750 - AluJb SINE Alu -5 307 1 2171 90 30 0 chr11 70603672 70603973 -80179580 + AluSg SINE Alu 1 310 0 2191 108 3 0 chr11 70605554 70605850 -80177703 - AluSx SINE Alu -15 297 1 188 382 67 0 chr11 70606941 70607030 -80176523 - MIR3 SINE MIR -48 160 66 211 225 39 20 chr11 70607197 70607255 -80176298 + MIR SINE MIR 95 146 -62 498 236 0 0 chr11 70607546 70607652 -80175901 - MLT1D LTR MaLR 0 505 400 2062 116 0 0 chr11 70607652 70607944 -80175609 + AluSx SINE Alu 1 292 -20 1202 129 0 0 chr11 70607944 70608122 -80175431 + AluSg/x SINE Alu 134 311 -1 312 306 58 16 chr11 70608306 70608427 -80175126 + L1ME4a LINE L1 5982 6107 -14 241 214 77 75 chr11 70608586 70608727 -80174826 - MIR SINE MIR -70 138 10 208 312 13 0 chr11 70608778 70608855 -80174698 + G-rich Low_complexity Low_complexity 3 80 0 310 308 10 0 chr11 70609556 70609660 -80173893 - MIR SINE MIR -123 139 35 352 283 28 9 chr11 70610025 70610131 -80173422 + MIR SINE MIR 38 145 -63 216 0 0 0 chr11 70611363 70611387 -80172166 + (A)n Simple_repeat Simple_repeat 1 24 0 932 189 5 11 chr11 70611391 70611576 -80171977 + AluJb SINE Alu 120 303 -9 2339 59 0 16 chr11 70611787 70612092 -80171461 + AluY SINE Alu 1 300 -11 2388 101 35 3 chr11 70612092 70612459 -80171094 + LTR15 LTR ERV1 109 487 -6 772 150 0 0 chr11 70612462 70612582 -80170971 + FRAM SINE Alu 45 164 -12 483 280 111 42 chr11 70612587 70612919 -80170634 + L1MEd LINE L1 98 452 -5667 2235 103 0 6 chr11 70613058 70613369 -80170184 - AluSx SINE Alu -2 310 2 2207 70 0 20 chr11 70613509 70613810 -80169743 + AluY SINE Alu 11 305 -6 602 97 78 10 chr11 70613814 70613917 -80169636 - MER101 LTR ERV1 -354 120 11 294 111 0 0 chr11 70613922 70613967 -80169586 + MER58 DNA MER1_type 2367 2411 -9 498 404 55 13 chr11 70614136 70614443 -80169110 - L1 LINE L1 -1071 5075 4756 765 215 45 69 chr11 70614486 70614732 -80168821 - MLT1J LTR MaLR -41 470 231 222 304 0 0 chr11 70614746 70614815 -80168738 + A-rich Low_complexity Low_complexity 1 69 0 227 219 232 24 chr11 70614851 70614933 -80168620 - MLT1J LTR MaLR -303 208 110 1587 139 6 108 chr11 70615099 70615275 -80168278 - AluJo SINE Alu -14 298 170 2025 108 3 0 chr11 70615275 70615562 -80167991 - AluSx SINE Alu -1 311 24 1587 139 6 108 chr11 70615562 70615717 -80167836 - AluJo SINE Alu -142 170 1 21 0 0 0 chr11 70615798 70615819 -80167734 + AT_rich Low_complexity Low_complexity 1 21 0 348 321 75 38 chr11 70615834 70616057 -80167496 - L1 LINE L1 -1605 4541 4328 1373 180 96 4 chr11 70616057 70616329 -80167224 - AluJb SINE Alu -15 297 1 348 321 75 38 chr11 70616329 70616600 -80166953 - L1 LINE L1 -1818 4328 4029 1956 77 15 11 chr11 70616628 70616900 -80166653 + AluSq SINE Alu 26 298 -15 1498 117 11 50 chr11 70616902 70617203 -80166350 + AluSx SINE Alu 14 303 0 181 111 0 0 chr11 70617203 70617230 -80166323 - MIR SINE MIR -85 123 97 1933 131 7 3 chr11 70617766 70618057 -80165496 + AluJo SINE Alu 1 292 -20 1478 174 20 20 chr11 70622138 70622437 -80161116 - AluJo SINE Alu -3 309 11 994 171 71 5 chr11 70622517 70622727 -80160826 + MIR SINE MIR 2 225 -37 223 163 0 23 chr11 70622857 70622900 -80160653 + (CA)n Simple_repeat Simple_repeat 2 43 0 2079 110 3 10 chr11 70622926 70623227 -80160326 + AluSx SINE Alu 1 299 -13 210 118 0 0 chr11 70623348 70623382 -80160171 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 285 358 55 12 chr11 70623395 70623560 -80159993 - L3 LINE CR1 -4 1573 1402 2018 205 126 25 chr11 70623676 70624238 -80159315 - MLT1E3 LTR MaLR -5 619 1 2064 144 0 0 chr11 70624255 70624567 -80158986 - AluSx SINE Alu 0 312 1 1165 213 126 14 chr11 70624574 70624922 -80158631 - L1ME3A LINE L1 -6 6164 5778 343 169 0 0 chr11 70624960 70625019 -80158534 + L1MD3 LINE L1 7937 7995 0 2424 171 65 0 chr11 70625143 70625587 -80157966 + MLT1D LTR MaLR 33 505 0 2237 92 0 0 chr11 70625600 70625895 -80157658 - AluSx SINE Alu -17 295 1 3267 160 10 81 chr11 70625980 70626034 -80157519 + L1PB4 LINE L1 5477 5533 -623 2187 97 3 3 chr11 70626034 70626333 -80157220 - AluSx SINE Alu -13 299 1 3267 160 10 81 chr11 70626333 70627010 -80156543 + L1PB4 LINE L1 5533 6156 0 508 99 72 54 chr11 70627140 70627251 -80156302 + L1MB2 LINE L1 6056 6168 -3 2165 123 0 0 chr11 70627263 70627571 -80155982 + AluSq SINE Alu 6 313 0 1684 132 0 118 chr11 70627621 70627738 -80155815 + AluJb SINE Alu 1 130 -172 198 0 0 0 chr11 70627738 70627760 -80155793 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1684 132 0 118 chr11 70627760 70627982 -80155571 + AluJb SINE Alu 130 300 -2 25 75 0 0 chr11 70628030 70628083 -80155470 + AT_rich Low_complexity Low_complexity 1 53 0 2478 56 0 0 chr11 70628578 70628882 -80154671 - AluY SINE Alu -5 306 3 700 163 0 0 chr11 70628884 70629019 -80154534 - L1M4 LINE L1 -857 5289 5155 291 175 0 0 chr11 70629069 70629126 -80154427 + T-rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr11 70629298 70629319 -80154234 + AT_rich Low_complexity Low_complexity 1 21 0 826 160 15 0 chr11 70629693 70629824 -80153729 + FLAM_C SINE Alu 1 133 0 1645 140 4 0 chr11 70630023 70630273 -80153280 - AluSq SINE Alu -48 265 15 913 95 8 0 chr11 70630405 70630531 -80153022 - AluSg SINE Alu -183 127 1 1834 92 81 0 chr11 70630618 70630878 -80152675 - AluSg SINE Alu -15 295 15 239 232 0 131 chr11 70630906 70630962 -80152591 - MLT1D LTR MaLR -417 88 49 1456 188 13 26 chr11 70630962 70631271 -80152282 - AluJb SINE Alu -7 305 1 239 232 0 131 chr11 70631271 70631313 -80152240 - MLT1D LTR MaLR -456 49 3 257 274 0 14 chr11 70631649 70631722 -80151831 + L2 LINE L2 3240 3311 -2 531 303 76 16 chr11 70633802 70633987 -80149566 - L2 LINE L2 0 3313 3118 195 216 0 39 chr11 70634182 70634217 -80149336 + MIR SINE MIR 113 147 -115 2016 114 10 0 chr11 70634217 70634507 -80149046 + AluSq SINE Alu 1 293 -20 195 216 0 39 chr11 70634507 70634522 -80149031 + MIR SINE MIR 147 161 -101 2031 126 14 0 chr11 70635918 70636211 -80147342 + AluSx SINE Alu 1 297 -15 1968 149 3 0 chr11 70637288 70637589 -80145964 + AluSx SINE Alu 1 302 -10 365 370 46 34 chr11 70687794 70688056 -80095497 - L2 LINE L2 -641 2673 2409 273 302 59 39 chr11 70688198 70688543 -80095010 + L1MEd LINE L1 996 1387 -4869 230 0 0 32 chr11 70688569 70688600 -80094953 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2050 125 0 36 chr11 70688636 70688941 -80094612 - AluSx SINE Alu -11 301 8 2194 117 3 0 chr11 70689656 70689954 -80093599 - AluSp SINE Alu -14 299 1 423 252 108 7 chr11 70690146 70690285 -80093268 - L2 LINE L2 -2 3311 3159 1140 203 0 47 chr11 70690480 70690712 -80092841 - MER58A DNA MER1_type 0 224 4 959 240 19 50 chr11 70690965 70691282 -80092271 + L1MC5 LINE L1 7607 7913 -48 2247 111 0 10 chr11 70691282 70691580 -80091973 + AluSg SINE Alu 1 295 -15 544 284 74 5 chr11 70692827 70693014 -80090539 + MER58C DNA MER1_type 1 215 0 2201 126 7 0 chr11 70693207 70693509 -80090044 + AluJb SINE Alu 1 304 -8 500 271 8 17 chr11 70694092 70694257 -80089296 - L1ME3A LINE L1 -1 6163 6006 2467 62 14 0 chr11 70694783 70695075 -80088478 + AluSp SINE Alu 1 296 -17 1872 152 81 8 chr11 70695179 70695560 -80087993 + L1MB7 LINE L1 5608 6016 -168 1781 181 7 7 chr11 70695636 70695935 -80087618 + AluJb SINE Alu 1 299 -13 2146 117 7 3 chr11 70695935 70696244 -80087309 + AluY SINE Alu 1 310 -1 219 279 70 23 chr11 70696558 70696644 -80086909 - MIR3 SINE MIR -31 177 88 455 248 53 0 chr11 70696784 70696897 -80086656 - L2 LINE L2 0 3313 3195 208 351 13 0 chr11 70697003 70697080 -80086473 - MIR SINE MIR -73 135 58 278 219 0 2 chr11 70697130 70697190 -80086363 - MIR SINE MIR -63 145 93 232 235 191 0 chr11 70697256 70697324 -80086229 + MIR SINE MIR 35 115 -93 769 244 107 13 chr11 70698211 70698436 -80085117 - MIR SINE MIR -16 246 1 708 240 46 104 chr11 70699757 70700103 -80083450 - L3 LINE CR1 -60 1517 1192 25 0 0 0 chr11 70701387 70701412 -80082141 + GC_rich Low_complexity Low_complexity 1 25 0 234 292 11 22 chr11 70701422 70701511 -80082042 + G-rich Low_complexity Low_complexity 2 89 0 183 218 202 73 chr11 70702353 70702477 -80081076 + MIR3 SINE MIR 10 149 -59 2245 53 14 14 chr11 70702532 70702859 -80080694 + AluY SINE Alu 1 327 0 240 208 169 13 chr11 70705070 70705147 -80078406 + L2 LINE L2 3180 3268 -4 503 96 0 0 chr11 70705331 70705404 -80078149 + U13 snRNA snRNA 1 73 -31 1508 158 34 47 chr11 70705584 70705881 -80077672 + AluJo SINE Alu 1 293 -19 1115 128 0 56 chr11 70705881 70706070 -80077483 + L1PA10 LINE L1 5989 6168 0 2181 113 14 0 chr11 70706089 70706381 -80077172 + AluSx SINE Alu 1 296 -16 2377 94 3 3 chr11 70706383 70706682 -80076871 + AluSx SINE Alu 1 299 -13 553 284 74 5 chr11 70707928 70708115 -80075438 + MER58C DNA MER1_type 1 215 0 2201 126 7 0 chr11 70708308 70708610 -80074943 + AluJb SINE Alu 1 304 -8 500 271 8 17 chr11 70709191 70709356 -80074197 - L1ME3A LINE L1 -1 6163 6006 2586 65 13 0 chr11 70709882 70710191 -80073362 + AluSp SINE Alu 1 313 0 484 314 132 10 chr11 70710683 70710887 -80072666 - MIR SINE MIR -21 241 13 1839 163 16 16 chr11 70712978 70713284 -80070269 - AluSx SINE Alu -6 306 1 307 308 113 8 chr11 70713571 70713704 -80069849 - MIR3 SINE MIR -2 206 60 594 292 71 50 chr11 70714365 70714543 -80069010 - HAL1b LINE L1 -1 1347 1174 829 146 0 36 chr11 70714543 70714680 -80068873 + FLAM_C SINE Alu 2 133 0 594 292 71 50 chr11 70714680 70715121 -80068432 - HAL1b LINE L1 -174 1174 715 473 219 62 31 chr11 70715445 70715573 -80067980 + L2 LINE L2 3176 3307 -6 243 250 33 0 chr11 70716013 70716073 -80067480 - L2 LINE L2 -15 3298 3237 382 238 74 90 chr11 70716115 70716304 -80067249 - L2 LINE L2 -213 3100 2915 274 221 63 21 chr11 70716306 70716401 -80067152 - L1MEc LINE L1 -3665 2550 2452 * 4400 223 80 105 chr11 70716391 70716883 -80066670 - L1MEc LINE L1 -4192 2204 1701 741 142 0 85 chr11 70716883 70717024 -80066529 + FLAM_C SINE Alu 5 133 -10 4400 223 80 105 chr11 70717024 70717148 -80066405 - L1MEc LINE L1 -4695 1701 1575 2040 143 0 19 chr11 70717148 70717455 -80066098 - AluSx SINE Alu -3 309 9 4400 223 80 105 chr11 70717455 70718050 -80065503 - L1MEc LINE L1 -4821 1575 967 224 29 0 29 chr11 70718050 70718084 -80065469 + (TTTTA)n Simple_repeat Simple_repeat 5 37 0 2098 117 0 7 chr11 70718084 70718366 -80065187 - AluSx SINE Alu -32 280 1 4400 223 80 105 chr11 70718366 70718502 -80065051 - L1MEc LINE L1 -5428 968 830 850 165 0 0 chr11 70718502 70718635 -80064918 - FLAM_C SINE Alu 0 133 1 4400 223 80 105 chr11 70718635 70719368 -80064185 - L1MEc LINE L1 -5566 830 35 567 261 146 22 chr11 70719371 70719597 -80063956 - L2 LINE L2 -397 2917 2664 22 35 0 0 chr11 70722234 70722263 -80061290 + GC_rich Low_complexity Low_complexity 1 29 0 34 72 0 0 chr11 70722380 70722449 -80061104 + GC_rich Low_complexity Low_complexity 1 69 0 30 0 0 0 chr11 70722590 70722620 -80060933 + GC_rich Low_complexity Low_complexity 1 30 0 249 109 0 0 chr11 70722765 70722811 -80060742 + (CAG)n Simple_repeat Simple_repeat 1 46 0 27 73 0 0 chr11 70723051 70723106 -80060447 + GC_rich Low_complexity Low_complexity 1 55 0 387 224 101 78 chr11 70724297 70724516 -80059037 - L1ME3A LINE L1 -214 5950 5727 1814 167 3 23 chr11 70725946 70726252 -80057301 - AluJo SINE Alu -12 300 1 248 291 0 73 chr11 70726285 70726395 -80057158 - HAL1b LINE L1 -11 1337 1236 2480 70 0 16 chr11 70727120 70727435 -80056118 - AluY SINE Alu -1 310 1 1905 168 3 3 chr11 70727435 70727733 -80055820 - AluJb SINE Alu -14 298 1 2441 74 7 0 chr11 70727931 70728229 -80055324 - AluY SINE Alu -11 300 1 2129 109 28 0 chr11 70728598 70728883 -80054670 - AluSx SINE Alu -17 295 3 2036 125 10 3 chr11 70729473 70729762 -80053791 + AluJb SINE Alu 1 291 -21 2250 119 3 0 chr11 70729892 70730195 -80053358 - AluSq SINE Alu -9 304 1 1826 175 0 13 chr11 70730742 70731045 -80052508 - AluJo SINE Alu -11 301 3 1944 108 78 20 chr11 70731083 70731378 -80052175 - AluSx SINE Alu 0 312 1 189 0 0 0 chr11 70731497 70731518 -80052035 + (T)n Simple_repeat Simple_repeat 1 21 0 241 212 129 12 chr11 70731781 70731866 -80051687 + L2 LINE L2 2682 2776 -538 * 260 243 0 28 chr11 70731846 70731947 -80051606 - L2 LINE L2 -1 3271 3173 * 364 317 194 17 chr11 70731946 70732221 -80051332 + L2 LINE L2 2739 3060 -253 699 266 101 29 chr11 70732397 70732675 -80050878 - L2 LINE L2 0 3313 3016 315 308 46 15 chr11 70732719 70732862 -80050691 - MIR SINE MIR -61 147 33 606 216 130 110 chr11 70733006 70733144 -80050409 + MIR SINE MIR 4 151 -111 2088 147 0 13 chr11 70733144 70733458 -80050095 + AluJo SINE Alu 2 311 -1 606 216 130 110 chr11 70733458 70733573 -80049980 + MIR SINE MIR 151 262 0 208 0 62 0 chr11 70733626 70733658 -80049895 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 1527 188 106 0 chr11 70734411 70734693 -80048860 - AluJo SINE Alu 0 312 1 2291 82 31 7 chr11 70734776 70735070 -80048483 + AluSq SINE Alu 1 301 -12 1472 264 141 28 chr11 70736132 70736908 -80046645 - L2 LINE L2 -2 3311 2440 1453 231 86 34 chr11 70737902 70738327 -80045226 - MER20B DNA MER1_type -59 724 268 2749 23 0 3 chr11 70738327 70738634 -80044919 - AluY SINE Alu -5 306 1 1453 231 86 34 chr11 70738634 70738707 -80044846 - MER20B DNA MER1_type -515 268 200 369 225 0 25 chr11 70738707 70738787 -80044766 + MER69 DNA AcHobo 1 78 -2448 1906 153 0 3 chr11 70738814 70739096 -80044457 - AluSx SINE Alu -14 298 18 271 118 39 39 chr11 70739104 70739155 -80044398 + MER4D LTR ERV1 779 829 -74 1952 267 77 33 chr11 70739171 70739428 -80044125 - L1ME3 LINE L1 -2 6160 5916 2171 110 0 7 chr11 70739428 70739727 -80043826 - AluSx SINE Alu -3 309 13 1952 267 77 33 chr11 70739727 70740363 -80043190 - L1ME3 LINE L1 -246 5916 5309 225 0 0 0 chr11 70740363 70740388 -80043165 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1952 267 77 33 chr11 70740388 70741176 -80042377 - L1ME3 LINE L1 -853 5309 4398 413 210 60 0 chr11 70741176 70741276 -80042277 + MER69 DNA AcHobo 2421 2526 0 378 229 108 83 chr11 70741285 70741442 -80042111 - MER20B DNA MER1_type -555 228 68 234 310 102 56 chr11 70741691 70741888 -80041665 + MIR SINE MIR 7 212 -50 2622 68 0 0 chr11 70741921 70742229 -80041324 + AluY SINE Alu 1 308 -3 372 43 0 0 chr11 70742376 70742422 -80041131 + (GCTTG)n Simple_repeat Simple_repeat 2 47 0 248 77 26 0 chr11 70742423 70742462 -80041091 + (TTCTC)n Simple_repeat Simple_repeat 3 42 0 1980 147 16 3 chr11 70742462 70742768 -80040785 - AluJb SINE Alu -2 310 1 1949 158 10 0 chr11 70743337 70743640 -80039913 - AluSx SINE Alu -6 306 1 8303 26 7 0 chr11 70743720 70745459 -80038094 - L1PA3 LINE L1 0 6155 4410 18116 19 1 0 chr11 70745459 70747662 -80035891 + L1PA3 LINE L1 2202 4405 -1741 2153 136 0 0 chr11 70747662 70747957 -80035596 - AluSx SINE Alu -17 295 1 231 176 81 14 chr11 70747967 70748041 -80035512 - HAL1 LINE L1 0 2507 2429 1588 162 8 12 chr11 70748125 70748378 -80035175 - AluSx SINE Alu -6 306 55 904 187 47 12 chr11 70748391 70748562 -80034991 - AluJ SINE Alu -1 311 135 1877 173 57 93 chr11 70748562 70748689 -80034864 - L1ME2 LINE L1 -334 5830 5700 2341 74 10 7 chr11 70748689 70748988 -80034565 - AluSp SINE Alu -13 300 1 1877 173 57 93 chr11 70748988 70749052 -80034501 - L1ME2 LINE L1 -464 5700 5635 709 172 15 30 chr11 70749052 70749186 -80034367 - AluJ SINE Alu -170 132 1 1877 173 57 93 chr11 70749186 70749316 -80034237 - L1ME2 LINE L1 -529 5635 5502 2109 234 89 30 chr11 70749316 70749875 -80033678 + MLT1E LTR MaLR 1 592 -1 1877 173 57 93 chr11 70749875 70750083 -80033470 - L1ME2 LINE L1 -662 5502 5318 1924 162 10 3 chr11 70750083 70750392 -80033161 + AluSx SINE Alu 1 311 -1 1877 173 57 93 chr11 70750392 70750473 -80033080 - L1ME2 LINE L1 -846 5318 5236 209 204 20 0 chr11 70750473 70750522 -80033031 + (TG)n Simple_repeat Simple_repeat 1 50 0 1152 316 63 33 chr11 70750551 70751212 -80032341 - L1MC4 LINE L1 -52 7990 7310 1013 184 6 0 chr11 70751219 70751398 -80032155 - AluSg/x SINE Alu 0 310 131 201 39 0 0 chr11 70751400 70751426 -80032127 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2218 88 0 3 chr11 70751426 70751710 -80031843 - AluY SINE Alu -28 283 1 639 229 0 45 chr11 70751710 70751727 -80031826 - L1MC4a LINE L1 -1203 6605 6589 1864 157 0 26 chr11 70751727 70752032 -80031521 - AluJb SINE Alu -15 297 1 2102 77 3 99 chr11 70752040 70752363 -80031190 - AluSq SINE Alu -18 295 4 639 229 0 45 chr11 70752363 70752539 -80031014 - L1MC4a LINE L1 -1226 6582 6447 1206 264 65 50 chr11 70752749 70753294 -80030259 - MLT1G1 LTR MaLR 0 595 1 2040 134 3 0 chr11 70754487 70754811 -80028742 - AluSx SINE Alu 0 325 1 2154 129 3 0 chr11 70755007 70755317 -80028236 - AluSx SINE Alu -1 311 1 2033 118 39 23 chr11 70755686 70755991 -80027562 - AluSx SINE Alu -2 310 1 1021 237 19 50 chr11 70755991 70756308 -80027245 - L1MC5 LINE L1 -48 7913 7607 1122 203 0 47 chr11 70756561 70756793 -80026760 + MER58A DNA MER1_type 4 224 0 378 280 21 35 chr11 70756984 70757127 -80026426 + L2 LINE L2 3171 3311 -2 2173 117 3 0 chr11 70757319 70757617 -80025936 + AluSp SINE Alu 1 299 -14 1615 121 21 105 chr11 70758325 70758467 -80025086 + AluJo SINE Alu 1 101 -211 2322 106 16 0 chr11 70758467 70758770 -80024783 + AluSx SINE Alu 1 308 -4 1615 121 21 105 chr11 70758770 70758959 -80024594 + AluJo SINE Alu 101 304 -8 925 241 138 43 chr11 70759258 70759770 -80023783 + L2 LINE L2 2752 3312 -1 1516 202 48 31 chr11 70760259 70760616 -80022937 - MLT1B LTR MaLR 0 390 28 1478 169 0 122 chr11 70760618 70760961 -80022592 + AluJo SINE Alu 1 301 -1 180 152 0 0 chr11 70760964 70760997 -80022556 + GA-rich Low_complexity Low_complexity 3 35 0 974 158 24 18 chr11 70761001 70761165 -80022388 + FRAM SINE Alu 1 162 -14 199 314 0 14 chr11 70761277 70761347 -80022206 - L2 LINE L2 -1 3271 3203 854 133 28 28 chr11 70761457 70761600 -80021953 + FLAM_C SINE Alu 1 143 0 841 160 6 45 chr11 70762480 70762636 -80020917 - FAM SINE Alu -18 167 18 1842 142 23 13 chr11 70762744 70763046 -80020507 - AluSx SINE Alu -7 305 1 1404 128 152 100 chr11 70763190 70763519 -80020034 - MER7A DNA MER2_type -2 344 1 1074 293 134 35 chr11 70763601 70763822 -80019731 + L2 LINE L2 2256 2454 -859 2088 113 36 0 chr11 70763822 70764123 -80019430 - AluSx SINE Alu 0 312 1 1074 293 134 35 chr11 70764123 70764844 -80018709 + L2 LINE L2 2454 3311 -2 435 273 148 22 chr11 70764923 70765234 -80018319 + L1MA8 LINE L1 5655 6004 -287 * 1552 193 117 24 chr11 70764960 70765380 -80018173 + L1ME2 LINE L1 5696 6154 -10 2489 67 0 0 chr11 70766315 70766613 -80016940 + AluY SINE Alu 1 298 -13 308 279 50 43 chr11 70766614 70766754 -80016799 - L1MC4a LINE L1 -1944 5864 5724 2117 137 0 13 chr11 70767107 70767414 -80016139 + AluJb SINE Alu 1 303 -9 442 219 16 122 chr11 70768673 70768795 -80014758 - L2 LINE L2 0 3313 3228 1892 159 14 3 chr11 70768795 70769090 -80014463 + AluJb SINE Alu 1 298 -14 442 219 16 122 chr11 70769090 70769213 -80014340 - L2 LINE L2 -85 3228 3094 496 188 68 0 chr11 70769245 70769362 -80014191 + Charlie4 DNA MER1_type 1831 1955 -6 2232 129 3 0 chr11 70769362 70769672 -80013881 + AluSq SINE Alu 1 311 -2 2463 76 7 0 chr11 70769749 70770050 -80013503 + AluSp SINE Alu 1 303 -10 1855 181 0 0 chr11 70770514 70770817 -80012736 + AluJo SINE Alu 1 303 -9 930 128 0 40 chr11 70770829 70770977 -80012576 + FLAM_C SINE Alu 1 142 -1 1317 194 95 18 chr11 70771371 70771654 -80011899 + MER58B DNA MER1_type 37 341 0 182 338 70 38 chr11 70771941 70772098 -80011455 + MIR3 SINE MIR 23 184 -24 * 303 308 46 8 chr11 70772094 70772250 -80011303 + MIR SINE MIR 12 170 -42 746 64 0 0 chr11 70772333 70772427 -80011126 - AluSx SINE Alu -10 300 207 1145 122 0 6 chr11 70772428 70772584 -80010969 - AluSx SINE Alu -157 155 1 436 202 234 58 chr11 70772764 70772952 -80010601 + MIR SINE MIR 4 224 -38 15287 117 32 28 chr11 70773170 70775377 -80008176 + Tigger1 DNA MER2_type 9 2206 -212 2309 112 0 7 chr11 70775377 70775680 -80007873 - AluSx SINE Alu -11 301 1 15287 117 32 28 chr11 70775680 70775692 -80007861 + Tigger1 DNA MER2_type 2206 2216 -202 2262 89 0 0 chr11 70775692 70776009 -80007544 - AluY SINE Alu 0 317 1 15287 117 32 28 chr11 70776009 70776180 -80007373 + Tigger1 DNA MER2_type 2216 2410 -8 273 315 55 24 chr11 70776403 70776530 -80007023 - L2 LINE L2 -261 3052 2922 * 394 139 30 79 chr11 70776515 70776616 -80006937 + MIR SINE MIR 85 180 -82 761 293 53 3 chr11 70776911 70777194 -80006359 - MLT1L LTR MaLR -4 611 315 503 127 10 4 chr11 70777197 70777304 -80006249 - L1P4 LINE L1 -386 5775 5677 1119 103 0 0 chr11 70777318 70777474 -80006079 + L1PB1 LINE L1 5928 6083 -68 2361 113 0 0 chr11 70777946 70778246 -80005307 + AluSx SINE Alu 1 300 -12 846 254 107 17 chr11 70780065 70780419 -80003134 + L1MC5 LINE L1 7268 7653 -308 683 224 80 43 chr11 70780473 70780772 -80002781 + L1MC5 LINE L1 7615 7924 -37 2343 101 0 0 chr11 70780789 70781086 -80002467 + AluSx SINE Alu 1 297 -15 670 250 45 10 chr11 70781103 70781303 -80002250 + L1ME1 LINE L1 5952 6158 -8 2178 129 0 0 chr11 70781338 70781632 -80001921 + AluSx SINE Alu 1 294 -18 315 0 0 0 chr11 70781644 70781679 -80001874 + (TTA)n Simple_repeat Simple_repeat 1 35 0 737 132 35 0 chr11 70781682 70781796 -80001757 - FLAM_C SINE Alu -15 118 1 221 219 0 0 chr11 70782200 70782241 -80001312 + (CAGC)n Simple_repeat Simple_repeat 4 44 0 237 294 117 58 chr11 70782757 70782979 -80000574 - L1ME3A LINE L1 -230 5940 5732 1641 189 7 17 chr11 70782979 70783276 -80000277 + AluJb SINE Alu 5 298 -14 237 294 117 58 chr11 70783276 70783834 -79999719 - L1ME3A LINE L1 -438 5732 5061 936 99 0 23 chr11 70783834 70783965 -79999588 + FLAM_C SINE Alu 1 128 -5 237 294 117 58 chr11 70783965 70784021 -79999532 - L1ME3A LINE L1 -1109 5061 5010 371 300 18 59 chr11 70784021 70784191 -79999362 + L2 LINE L2 2248 2410 -904 1704 144 27 90 chr11 70784192 70784252 -79999301 + MER2 DNA MER2_type 1 63 -282 1926 173 32 22 chr11 70784252 70784623 -79998930 + THE1C LTR MaLR 1 375 0 1704 144 27 90 chr11 70784623 70784870 -79998683 + MER2 DNA MER2_type 63 284 -61 2073 126 3 0 chr11 70784870 70785156 -79998397 - AluSx SINE Alu -25 287 1 1704 144 27 90 chr11 70785156 70785215 -79998338 + MER2 DNA MER2_type 284 345 0 380 318 50 28 chr11 70785217 70785396 -79998157 + L2 LINE L2 2412 2594 -720 1242 184 73 8 chr11 70785748 70785993 -79997560 - AluJo SINE Alu -51 261 1 24 0 0 0 chr11 70786050 70786074 -79997479 + AT_rich Low_complexity Low_complexity 1 24 0 1258 94 0 28 chr11 70786444 70786625 -79996928 - AluSx SINE Alu -2 308 133 2050 113 39 0 chr11 70787121 70787403 -79996150 + AluSx SINE Alu 1 293 -19 2381 101 0 0 chr11 70787852 70788149 -79995404 - AluSx SINE Alu -15 297 1 216 0 0 0 chr11 70788455 70788479 -79995074 + (CA)n Simple_repeat Simple_repeat 2 25 0 243 0 0 0 chr11 70788516 70788543 -79995010 + (CA)n Simple_repeat Simple_repeat 1 27 0 575 343 46 25 chr11 70788758 70789082 -79994471 - L3 LINE CR1 -1 1576 1246 318 260 98 81 chr11 70789115 70789427 -79994126 - L1M4 LINE L1 -817 5329 5007 270 73 0 0 chr11 70789427 70789468 -79994085 + (TG)n Simple_repeat Simple_repeat 2 42 0 318 260 98 81 chr11 70789468 70789604 -79993949 - L1M4 LINE L1 -1139 5007 4875 224 254 136 9 chr11 70789751 70789861 -79993692 - L3 LINE CR1 -802 775 652 220 306 0 0 chr11 70790024 70790086 -79993467 - MER5A DNA MER1_type 0 189 128 993 121 0 0 chr11 70790087 70790219 -79993334 - AluSx SINE Alu -180 133 2 222 105 53 0 chr11 70790231 70790269 -79993284 - MER5A DNA MER1_type -83 106 67 234 0 0 0 chr11 70790273 70790299 -79993254 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1094 201 87 34 chr11 70790300 70790564 -79992989 - AluJo SINE Alu -32 280 3 317 190 0 0 chr11 70790570 70790628 -79992925 - MER5A DNA MER1_type -118 71 14 616 216 157 13 chr11 70790636 70790789 -79992764 - MER96 DNA MER1_type 0 175 1 2449 67 0 14 chr11 70790875 70791172 -79992381 - AluSc SINE Alu -16 293 1 288 210 0 32 chr11 70791176 70791238 -79992315 + MER5A DNA MER1_type 130 189 0 4437 112 23 27 chr11 70791388 70792138 -79991415 - L1MA2 LINE L1 0 6304 5558 419 271 173 0 chr11 70792308 70792441 -79991112 - MER5A DNA MER1_type 0 189 34 492 235 45 137 chr11 70792740 70793289 -79990264 - L1MC4a LINE L1 -1643 6165 5667 1108 165 24 108 chr11 70793481 70793563 -79989990 - AluJo SINE Alu -15 297 210 2083 144 0 0 chr11 70793563 70793861 -79989692 + AluSx SINE Alu 1 298 -14 1108 165 24 108 chr11 70793861 70793989 -79989564 - AluJo SINE Alu -102 210 117 2220 109 3 13 chr11 70793989 70794301 -79989252 - AluSx SINE Alu -3 309 1 1108 165 24 108 chr11 70794301 70794386 -79989167 - AluJo SINE Alu -195 117 26 1695 136 43 30 chr11 70794497 70794799 -79988754 - AluJb SINE Alu -6 306 1 27 0 0 0 chr11 70794806 70794833 -79988720 + AT_rich Low_complexity Low_complexity 1 27 0 2070 151 0 0 chr11 70795832 70796131 -79987422 - AluSx SINE Alu -13 299 1 2218 111 3 3 chr11 70796829 70797126 -79986427 - AluSx SINE Alu -15 297 1 437 262 60 18 chr11 70797260 70797428 -79986125 + L1M4b LINE L1 29 203 -6656 311 244 87 122 chr11 70797661 70798030 -79985523 + L1M4b LINE L1 832 1187 -5668 343 264 194 13 chr11 70798104 70798259 -79985294 + L1M4b LINE L1 1206 1388 -5471 2426 260 75 38 chr11 70798317 70798956 -79984597 + L1M4b LINE L1 1373 2065 -4894 2042 120 0 43 chr11 70798956 70799281 -79984272 + AluSx SINE Alu 1 311 -1 2426 260 75 38 chr11 70799281 70799647 -79983906 + L1M4b LINE L1 2065 2416 -4543 498 279 36 44 chr11 70799673 70799860 -79983693 + L1M4b LINE L1 2454 2640 -4498 1703 130 93 9 chr11 70799860 70800182 -79983371 + L1MA3 LINE L1 5957 6305 0 498 279 36 44 chr11 70800182 70800245 -79983308 + L1M4b LINE L1 2640 2702 -4436 26 0 0 0 chr11 70800332 70800358 -79983195 + AT_rich Low_complexity Low_complexity 1 26 0 1720 158 36 4 chr11 70800358 70800637 -79982916 - AluJo SINE Alu -24 288 1 230 282 55 18 chr11 70800721 70800831 -79982722 + L1ME LINE L1 5713 5826 -338 2195 107 0 0 chr11 70800835 70801116 -79982437 + AluSx SINE Alu 1 281 -31 181 0 0 0 chr11 70801116 70801136 -79982417 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2208 117 10 0 chr11 70801282 70801582 -79981971 - AluSx SINE Alu 0 312 1 261 0 0 0 chr11 70801871 70801900 -79981653 + (TG)n Simple_repeat Simple_repeat 2 30 0 2308 93 3 0 chr11 70801951 70802241 -79981312 - AluSp SINE Alu -22 291 1 667 274 81 49 chr11 70802942 70803388 -79980165 + L1ME LINE L1 46 505 -5565 2240 259 66 62 chr11 70803503 70804143 -79979410 + L1ME2 LINE L1 253 889 -5372 1844 152 28 3 chr11 70804143 70804432 -79979121 + AluJo SINE Alu 1 296 -16 2240 259 66 62 chr11 70804432 70804813 -79978740 + L1ME2 LINE L1 889 1267 -4994 603 126 19 29 chr11 70804813 70804916 -79978637 + U13 snRNA snRNA 1 102 -2 2240 259 66 62 chr11 70804916 70805312 -79978241 + L1ME2 LINE L1 1267 1722 -4539 1043 176 12 6 chr11 70805320 70805485 -79978068 - FAM SINE Alu -7 168 3 862 157 0 15 chr11 70805555 70805689 -79977864 + AluJo/FLAM SINE Alu 1 132 -180 2314 83 7 0 chr11 70805692 70805992 -79977561 + AluY SINE Alu 1 302 -9 300 260 21 21 chr11 70806002 70806098 -79977455 + L1ME2 LINE L1 1768 1863 -4398 * 1138 201 31 4 chr11 70806095 70806349 -79977204 + L1ME2 LINE L1 2160 2420 -3660 1904 163 0 7 chr11 70806349 70806644 -79976909 + AluJo SINE Alu 3 295 -17 2480 254 111 26 chr11 70806652 70808332 -79975221 + L1ME2 LINE L1 4195 6017 -81 414 0 0 0 chr11 70808397 70808443 -79975110 + (TA)n Simple_repeat Simple_repeat 1 46 0 2051 114 28 7 chr11 70808444 70808733 -79974820 - AluSx SINE Alu -17 295 1 2451 68 3 0 chr11 70808761 70809057 -79974496 + AluY SINE Alu 1 297 -14 768 266 45 80 chr11 70809341 70809739 -79973814 + HAL1 LINE L1 12 395 -2112 334 329 100 24 chr11 70809946 70810156 -79973397 + HAL1 LINE L1 594 819 -1688 1941 143 0 27 chr11 70810156 70810457 -79973096 - AluJb SINE Alu -19 293 1 339 196 182 28 chr11 70810461 70810604 -79972949 + HAL1 LINE L1 957 1121 -1386 1365 218 0 11 chr11 70810604 70810879 -79972674 + AluJo SINE Alu 1 272 -40 1236 244 132 19 chr11 70810880 70811344 -79972209 + HAL1 LINE L1 1142 1657 -850 2389 81 3 0 chr11 70811344 70811642 -79971911 + AluSp SINE Alu 1 299 -14 585 247 34 2 chr11 70811642 70811796 -79971757 - L1ME LINE L1 -534 5628 5468 475 231 211 7 chr11 70812424 70812571 -79970982 + MIR SINE MIR 58 234 -28 251 223 62 62 chr11 70812635 70812700 -79970853 - L1ME4a LINE L1 -3 6101 6037 1544 168 20 59 chr11 70812700 70813003 -79970550 - AluJo SINE Alu -21 291 1 251 223 62 62 chr11 70813003 70813067 -79970486 - L1ME4a LINE L1 -66 6038 5972 657 222 191 0 chr11 70813092 70813286 -79970267 + MIR SINE MIR 9 239 -23 859 206 0 26 chr11 70813479 70813668 -79969885 + AluJb SINE Alu 129 312 0 993 224 87 99 chr11 70814171 70814294 -79969259 + MLT1C LTR MaLR 48 171 -296 2356 91 13 0 chr11 70814294 70814602 -79968951 - AluSx SINE Alu 0 312 1 993 224 87 99 chr11 70814602 70814903 -79968650 + MLT1C LTR MaLR 171 467 0 2061 141 0 7 chr11 70815247 70815553 -79968000 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr11 70816615 70816636 -79966917 + AT_rich Low_complexity Low_complexity 1 21 0 686 126 0 11 chr11 70816646 70816741 -79966812 + FLAM_A SINE Alu 23 116 -26 236 88 70 0 chr11 70816743 70816800 -79966753 + (TA)n Simple_repeat Simple_repeat 1 61 0 1012 124 0 0 chr11 70816800 70816929 -79966624 - FLAM_C SINE Alu -4 129 1 1404 286 85 28 chr11 70817277 70817890 -79965663 + L2 LINE L2 1842 2489 -825 490 153 0 14 chr11 70817941 70818013 -79965540 - FLAM_A SINE Alu -26 116 46 536 345 112 10 chr11 70818018 70818318 -79965235 + L2 LINE L2 2501 2850 -464 2236 113 3 0 chr11 70818318 70818627 -79964926 - AluSx SINE Alu -2 310 1 536 345 112 10 chr11 70818627 70818709 -79964844 + L2 LINE L2 2850 2922 -392 237 291 70 0 chr11 70818841 70818927 -79964626 - L1ME4a LINE L1 -335 5812 5721 511 222 82 7 chr11 70818967 70819102 -79964451 - MIR SINE MIR -25 237 93 1200 238 91 18 chr11 70819117 70819458 -79964095 - L1ME4a LINE L1 -525 5620 5255 862 127 57 44 chr11 70819514 70819672 -79963881 - FRAM SINE Alu -9 167 8 695 295 158 11 chr11 70819676 70820133 -79963420 - L1ME4a LINE L1 -932 5197 4674 1337 169 40 28 chr11 70820133 70820382 -79963171 - AluJb SINE Alu -60 252 1 381 231 77 21 chr11 70820388 70820531 -79963022 - L1ME4a LINE L1 -1489 4640 4490 325 239 54 22 chr11 70820618 70820710 -79962843 + MIR SINE MIR 1 95 -167 458 181 103 26 chr11 70820717 70820833 -79962720 + MIR SINE MIR 47 171 -91 1627 265 67 82 chr11 70820872 70820933 -79962620 - L1ME4a LINE L1 -1710 4419 4359 243 0 0 0 chr11 70820933 70820960 -79962593 + (TG)n Simple_repeat Simple_repeat 2 28 0 1627 265 67 82 chr11 70820960 70821586 -79961967 - L1ME4a LINE L1 -1770 4359 3753 2152 90 0 61 chr11 70821586 70821897 -79961656 - AluSg SINE Alu -18 292 1 1627 265 67 82 chr11 70821897 70822336 -79961217 - L1ME4a LINE L1 -2376 3753 3309 912 250 164 64 chr11 70822405 70822842 -79960711 - L1MEd LINE L1 -2980 3149 2757 1399 166 122 19 chr11 70822842 70823113 -79960440 + AluJb SINE Alu 5 303 -9 912 250 164 64 chr11 70823113 70823667 -79959886 - L1MEd LINE L1 -3372 2757 2061 2482 39 0 0 chr11 70823753 70824061 -79959492 - AluY SINE Alu 0 308 1 1909 214 65 7 chr11 70824425 70824884 -79958669 + MLT1F LTR MaLR 1 486 -56 2360 69 24 0 chr11 70824885 70825175 -79958378 + AluSc SINE Alu 1 297 -12 917 163 0 0 chr11 70825274 70825415 -79958138 - FLAM_C SINE Alu -2 141 1 429 220 53 27 chr11 70825415 70825565 -79957988 - L1MEd LINE L1 -4597 1532 1379 2987 172 88 86 chr11 70825574 70825608 -79957945 + L1MB8 LINE L1 5254 5286 -892 2295 94 0 7 chr11 70825608 70825906 -79957647 + AluSx SINE Alu 1 296 -16 2987 172 88 86 chr11 70825906 70825953 -79957600 + L1MB8 LINE L1 5286 5331 -847 2243 100 7 0 chr11 70825953 70826244 -79957309 + AluSx SINE Alu 1 293 -19 2987 172 88 86 chr11 70826244 70827050 -79956503 + L1MB8 LINE L1 5331 6146 -32 2105 119 0 35 chr11 70827050 70827362 -79956191 + AluSx SINE Alu 1 301 -11 2987 172 88 86 chr11 70827362 70827375 -79956178 + L1MB8 LINE L1 6146 6157 -21 230 0 0 32 chr11 70827398 70827429 -79956124 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 300 283 65 44 chr11 70827455 70827800 -79955753 - L1MEd LINE L1 -4869 1250 996 407 378 41 31 chr11 70827942 70828236 -79955317 + L2 LINE L2 2409 2705 -609 1268 174 41 12 chr11 70828267 70828509 -79955044 - L1PA16 LINE L1 -9 6157 5909 2172 130 0 0 chr11 70828597 70828896 -79954657 - AluSq SINE Alu -14 299 1 317 291 146 75 chr11 70828942 70829210 -79954343 + L2 LINE L2 2922 3208 -64 1659 95 9 0 chr11 70829452 70829673 -79953880 - AluSp SINE Alu -90 223 1 1116 188 5 14 chr11 70829788 70830011 -79953542 - AluJo SINE Alu -6 306 86 310 230 119 55 chr11 70830325 70830711 -79952842 - L1ME3 LINE L1 -81 6081 5683 1507 183 76 42 chr11 70830711 70831143 -79952410 - Charlie1b DNA MER1_type -76 447 1 574 298 46 7 chr11 70831227 70831489 -79952064 - L1P3 LINE L1 -609 5545 5272 421 145 29 0 chr11 70831589 70831658 -79951895 - AluS SINE Alu -241 72 2 207 209 47 0 chr11 70831809 70831852 -79951701 + MIR SINE MIR 107 151 -111 2090 123 33 0 chr11 70832022 70832323 -79951230 - AluSx SINE Alu 0 312 2 400 164 14 0 chr11 70832358 70832431 -79951122 + AluS SINE Alu 225 298 -13 300 258 36 174 chr11 70832448 70832534 -79951019 - L1 LINE L1 -1883 4263 4167 2245 116 0 0 chr11 70832534 70832835 -79950718 - AluSc SINE Alu -8 301 1 300 258 36 174 chr11 70832835 70832855 -79950698 - L1 LINE L1 -1979 4167 4146 1899 161 0 0 chr11 70832855 70833141 -79950412 - AluJb SINE Alu -26 286 1 300 258 36 174 chr11 70833141 70833390 -79950163 - L1 LINE L1 -2000 4146 3987 2235 111 0 7 chr11 70833390 70833696 -79949857 - AluSx SINE Alu -8 304 1 300 258 36 174 chr11 70833696 70833814 -79949739 - L1 LINE L1 -2159 3987 3854 185 260 143 26 chr11 70834119 70834196 -79949357 - MIR SINE MIR -11 251 166 1452 159 12 90 chr11 70834652 70834973 -79948580 - AluJo SINE Alu -16 296 1 1878 153 7 0 chr11 70835032 70835340 -79948213 + AluJb SINE Alu 1 310 0 299 297 54 21 chr11 70835612 70835763 -79947790 - MIR3 SINE MIR -60 148 9 2292 158 51 9 chr11 70835774 70836205 -79947348 - MER66A LTR ERV1 -3 475 27 1350 97 0 6 chr11 70836344 70836520 -79947033 + AluSg/x SINE Alu 133 307 -5 303 326 68 48 chr11 70836895 70837042 -79946511 + L2 LINE L2 3103 3252 -20 1726 157 13 49 chr11 70838166 70838472 -79945081 + AluJo SINE Alu 1 295 -17 568 246 60 86 chr11 70838518 70838851 -79944702 + L2 LINE L2 2879 3269 -44 641 254 94 8 chr11 70839060 70839377 -79944176 - L1ME3 LINE L1 -131 6031 5673 * 6168 125 26 22 chr11 70839365 70840491 -79943062 - L1MA5A LINE L1 0 6297 5159 615 233 62 79 chr11 70840486 70840726 -79942827 - L1ME3 LINE L1 -459 5705 5470 * 418 290 121 34 chr11 70841132 70841339 -79942214 + MIR SINE MIR 28 252 -10 2556 160 38 16 chr11 70842003 70842454 -79941099 + MER65C LTR ERV1 1 461 0 1096 169 165 4 chr11 70842603 70842862 -79940691 - AluSx SINE Alu 0 308 12 2331 175 41 30 chr11 70843153 70843644 -79939909 - MLT1D LTR MaLR -9 496 1 260 169 16 37 chr11 70843653 70843715 -79939838 + MIR SINE MIR 52 113 -95 2208 110 3 0 chr11 70843927 70844226 -79939327 + AluSx SINE Alu 1 300 -12 332 309 231 12 chr11 70844374 70844707 -79938846 - L2 LINE L2 -5 3267 2862 639 149 70 9 chr11 70845383 70845497 -79938056 + FLAM_A SINE Alu 1 121 -12 2514 57 0 3 chr11 70846148 70846449 -79937104 - AluY SINE Alu -11 300 1 2074 114 38 0 chr11 70847128 70847418 -79936135 + AluSx SINE Alu 1 301 -11 669 177 0 9 chr11 70847900 70848013 -79935540 - L2 LINE L2 0 3313 3202 3558 201 63 47 chr11 70848019 70848268 -79935285 + Charlie1a DNA MER1_type 1 245 -2516 815 197 34 0 chr11 70848268 70848415 -79935138 + FRAM SINE Alu 1 152 -14 3558 201 63 47 chr11 70848415 70848800 -79934753 + Charlie1a DNA MER1_type 245 655 -2106 2042 120 42 0 chr11 70848800 70849083 -79934470 - AluSx SINE Alu -17 295 1 3558 201 63 47 chr11 70849083 70849325 -79934228 + Charlie1a DNA MER1_type 655 892 -563 1077 179 42 0 chr11 70849333 70849545 -79934008 - L1MD3 LINE L1 -10 7985 7765 2049 151 28 90 chr11 70849548 70849697 -79933856 + Charlie1a DNA MER1_type 887 1044 -1717 1934 177 7 0 chr11 70849697 70850007 -79933546 + AluJo SINE Alu 1 312 0 2049 151 28 90 chr11 70850007 70850208 -79933345 + Charlie1a DNA MER1_type 1044 1195 -1566 3294 163 51 25 chr11 70850208 70850268 -79933285 + L1MB7 LINE L1 5525 5582 -602 862 141 16 0 chr11 70850268 70850396 -79933157 - FLAM_C SINE Alu -1 132 3 3294 163 51 25 chr11 70850396 70850978 -79932575 + L1MB7 LINE L1 5582 6184 0 2049 151 28 90 chr11 70850978 70851157 -79932396 + Charlie1a DNA MER1_type 1195 1384 -71 305 154 123 0 chr11 70851154 70851219 -79932334 + Charlie1 DNA MER1_type 2658 2730 -31 * 2540 67 0 0 chr11 70851219 70851516 -79932037 + AluY SINE Alu 1 297 -14 13392 140 38 50 chr11 70851522 70851923 -79931630 + L1MA3 LINE L1 3245 3649 -4075 2311 113 0 3 chr11 70851923 70852233 -79931320 + AluSg SINE Alu 1 309 -1 13392 140 38 50 chr11 70852233 70852254 -79931299 + L1MA3 LINE L1 3649 3669 -4055 1799 192 0 3 chr11 70852254 70852556 -79930997 + AluJo SINE Alu 1 301 -11 13392 140 38 50 chr11 70852556 70853126 -79930427 + L1MA3 LINE L1 3669 4244 -3480 2129 119 0 3 chr11 70853126 70853419 -79930134 + AluSc SINE Alu 1 292 -17 13392 140 38 50 chr11 70853419 70853844 -79929709 + L1MA3 LINE L1 4244 4672 -3052 2151 127 13 0 chr11 70853844 70854143 -79929410 - AluSq SINE Alu -10 303 1 13392 140 38 50 chr11 70854143 70854794 -79928759 + L1MA3 LINE L1 4672 5329 -2395 895 165 0 0 chr11 70854794 70854927 -79928626 + FLAM_C SINE Alu 1 133 0 180 0 0 0 chr11 70854937 70854957 -79928596 + (TA)n Simple_repeat Simple_repeat 2 21 0 13392 140 38 50 chr11 70854957 70856245 -79927308 + L1MA3 LINE L1 5338 6656 -1068 409 127 48 0 chr11 70856245 70856308 -79927245 + AluJ/FLAM SINE Alu 2 67 -245 13392 140 38 50 chr11 70856308 70856672 -79926881 + L1MA3 LINE L1 6656 7023 -701 2068 106 86 0 chr11 70856680 70857028 -79926525 + L1MA3 LINE L1 7122 7499 -225 852 153 0 0 chr11 70857028 70857146 -79926407 + AluJb SINE Alu 1 118 -194 2368 98 0 0 chr11 70857158 70857453 -79926100 - AluSq SINE Alu -18 295 1 30 0 0 0 chr11 70857458 70857488 -79926065 + AT_rich Low_complexity Low_complexity 1 30 0 1386 122 26 0 chr11 70857494 70857723 -79925830 + L1MA3 LINE L1 7486 7720 -4 819 158 0 8 chr11 70857828 70857961 -79925592 - FLAM_C SINE Alu 0 133 2 2075 133 3 3 chr11 70858034 70858334 -79925219 + AluSx SINE Alu 1 300 -12 25 0 0 0 chr11 70858345 70858370 -79925183 + AT_rich Low_complexity Low_complexity 1 25 0 260 160 40 0 chr11 70858495 70858545 -79925008 + L1MEd LINE L1 562 613 -5506 180 77 0 0 chr11 70858616 70858642 -79924911 + (GGCTG)n Simple_repeat Simple_repeat 1 26 0 505 255 123 20 chr11 70858819 70859023 -79924530 - L2 LINE L2 -164 3149 2925 824 264 89 3 chr11 70859090 70859353 -79924200 - L1MC5 LINE L1 -30 7931 7637 2152 136 0 0 chr11 70859353 70859647 -79923906 + AluSx SINE Alu 1 294 -18 824 264 89 3 chr11 70859647 70859686 -79923867 - L1MC5 LINE L1 -324 7637 7603 439 182 0 0 chr11 70859855 70859932 -79923621 - AluS SINE Alu -7 302 226 192 40 0 0 chr11 70859932 70859957 -79923596 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1789 161 18 0 chr11 70859957 70860231 -79923322 - AluSx SINE Alu -31 281 3 788 169 8 0 chr11 70860512 70860642 -79922911 + FLAM_C SINE Alu 5 135 -8 773 132 44 66 chr11 70860710 70860890 -79922663 + FLAM_C SINE Alu 1 177 0 230 293 17 17 chr11 70861004 70861120 -79922433 - L1ME LINE L1 -575 5587 5472 282 295 50 22 chr11 70861295 70861434 -79922119 - L2 LINE L2 -213 3059 2917 324 119 51 0 chr11 70861442 70861501 -79922052 + AluS SINE Alu 41 102 -200 2100 104 28 7 chr11 70861800 70862089 -79921464 + AluSx SINE Alu 1 295 -17 1970 141 0 25 chr11 70862189 70862509 -79921044 - AluJo SINE Alu 0 312 1 4189 239 66 50 chr11 70863665 70864291 -79919262 - L1MC4 LINE L1 -15 8027 7412 2157 112 0 16 chr11 70864291 70864603 -79918950 - AluSc SINE Alu -2 307 1 929 119 0 8 chr11 70864609 70864743 -79918810 - FLAM_C SINE Alu 0 133 1 4189 239 66 50 chr11 70864743 70865018 -79918535 - L1MC4 LINE L1 -634 7408 7139 2081 131 3 10 chr11 70865018 70865323 -79918230 - AluSx SINE Alu -9 303 1 4189 239 66 50 chr11 70865323 70865920 -79917633 - L1MC4 LINE L1 -903 7139 6497 2483 56 0 0 chr11 70865923 70866208 -79917345 + AluY SINE Alu 1 285 -26 2355 101 3 0 chr11 70866738 70867034 -79916519 - AluSx SINE Alu -15 297 1 216 0 0 0 chr11 70867340 70867364 -79916189 + (CA)n Simple_repeat Simple_repeat 2 25 0 279 0 0 0 chr11 70867401 70867432 -79916121 + (CA)n Simple_repeat Simple_repeat 1 31 0 709 341 65 24 chr11 70867647 70868019 -79915534 - L3 LINE CR1 -1 1576 1190 239 71 24 0 chr11 70868316 70868358 -79915195 + (TG)n Simple_repeat Simple_repeat 2 44 0 291 301 29 7 chr11 70868358 70868494 -79915059 - L1ME LINE L1 -1133 5013 4875 336 305 174 32 chr11 70868527 70868809 -79914744 - L3 LINE CR1 -661 916 595 196 339 0 0 chr11 70868919 70868981 -79914572 - MER5A DNA MER1_type 0 189 128 924 68 60 0 chr11 70868991 70869108 -79914445 - AluSc SINE Alu -185 124 1 1861 209 32 5 chr11 70869109 70869511 -79914042 - MLT1F LTR MaLR -56 486 74 2523 36 0 0 chr11 70869932 70870240 -79913313 + AluY SINE Alu 1 308 0 227 282 251 10 chr11 70870358 70870880 -79912673 + L1M4 LINE L1 2110 2757 -3389 640 170 0 0 chr11 70870880 70870980 -79912573 - AluSg/x SINE Alu -9 300 201 225 0 0 0 chr11 70871130 70871155 -79912398 + (A)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chr11 70871155 70871177 -79912376 + (TA)n Simple_repeat Simple_repeat 2 23 0 6661 133 48 59 chr11 70871180 70872470 -79911083 + L1MA3 LINE L1 3913 5237 -1068 409 127 48 0 chr11 70872470 70872533 -79911020 + AluJ/FLAM SINE Alu 2 67 -245 6661 133 48 59 chr11 70872533 70872897 -79910656 + L1MA3 LINE L1 5237 5604 -701 2068 106 86 0 chr11 70872905 70873253 -79910300 + L1MA3 LINE L1 5703 6080 -225 852 153 0 0 chr11 70873253 70873371 -79910182 + AluJb SINE Alu 1 118 -194 2355 105 0 0 chr11 70873383 70873678 -79909875 - AluSq SINE Alu -18 295 1 2344 89 0 0 chr11 70873716 70874007 -79909546 - AluY SINE Alu -20 291 1 823 123 112 24 chr11 70874008 70874178 -79909375 + Tigger1 DNA MER2_type 2226 2410 -8 355 313 74 54 chr11 70874206 70874503 -79909050 - L2 LINE L2 -23 3249 2947 425 140 30 80 chr11 70874514 70874614 -79908939 + MIR SINE MIR 86 180 -82 737 274 60 4 chr11 70874909 70875157 -79908396 - MLT1L LTR MaLR -4 611 350 475 128 11 5 chr11 70875195 70875304 -79908249 - L1P4 LINE L1 -386 5775 5673 1065 103 0 0 chr11 70875316 70875472 -79908081 + L1PB1 LINE L1 5928 6083 -68 1850 181 0 7 chr11 70875944 70876247 -79907306 + AluSx SINE Alu 1 301 -11 299 293 57 0 chr11 70878066 70878172 -79905381 + L1MC5 LINE L1 7268 7379 -582 243 0 0 0 chr11 70878287 70878314 -79905239 + (A)n Simple_repeat Simple_repeat 1 27 0 2261 105 0 3 chr11 70878325 70878629 -79904924 - AluSp SINE Alu -10 303 1 342 113 0 0 chr11 70878631 70878684 -79904869 - Alu SINE Alu -8 294 242 199 175 25 0 chr11 70879062 70879102 -79904451 + MIR SINE MIR 97 137 -125 2234 112 7 0 chr11 70879150 70879446 -79904107 + AluSx SINE Alu 1 298 -14 356 289 128 27 chr11 70879501 70879650 -79903903 + MIR SINE MIR 20 183 -79 732 105 57 0 chr11 70880745 70880869 -79902684 + L1MA9 LINE L1 6179 6309 -3 2090 129 3 14 chr11 70881116 70881411 -79902142 + AluSx SINE Alu 1 292 -20 1258 145 18 27 chr11 70881585 70881806 -79901747 + MER20 DNA MER1_type 1 219 0 239 139 23 0 chr11 70883297 70883340 -79900213 - L2 LINE L2 -8 3264 3221 201 280 13 27 chr11 70883385 70883460 -79900093 - L2 LINE L2 -207 3065 2992 356 297 9 18 chr11 70883714 70883825 -79899728 + L2 LINE L2 2640 2749 -565 788 283 67 17 chr11 70883827 70884124 -79899429 + L1ME3 LINE L1 5848 6159 -3 805 173 8 8 chr11 70884323 70884456 -79899097 + AluJo SINE Alu 1 133 -169 180 0 0 0 chr11 70884601 70884621 -79898932 + (A)n Simple_repeat Simple_repeat 1 20 0 879 171 63 13 chr11 70884625 70884783 -79898770 + AluJo SINE Alu 124 289 -23 2159 42 76 0 chr11 70884805 70885109 -79898444 + AluY SINE Alu 1 324 0 1565 110 4 65 chr11 70885113 70885358 -79898195 + AluSp SINE Alu 67 296 -17 270 0 0 0 chr11 70885521 70885551 -79898002 + (A)n Simple_repeat Simple_repeat 1 30 0 293 283 75 19 chr11 70887794 70887900 -79895653 + MIR SINE MIR 30 141 -67 1675 147 23 8 chr11 70890020 70890285 -79893268 + AluJo SINE Alu 43 311 -1 764 206 106 5 chr11 70891416 70891615 -79891938 + MER20 DNA MER1_type 1 219 0 1981 136 0 44 chr11 70892139 70892313 -79891240 - AluSx SINE Alu -5 307 152 2432 70 0 0 chr11 70892313 70892600 -79890953 - AluSc SINE Alu -21 288 2 1981 136 0 44 chr11 70892600 70892742 -79890811 - AluSx SINE Alu -160 152 5 1097 116 0 0 chr11 70893861 70894049 -79889504 - AluSg/x SINE Alu 0 322 135 1059 124 33 0 chr11 70894760 70894913 -79888640 + FRAM SINE Alu 1 157 -19 224 310 133 38 chr11 70895100 70895258 -79888295 + MIR SINE MIR 20 192 -70 519 153 0 12 chr11 70895279 70895364 -79888189 + FLAM_A SINE Alu 21 104 -38 251 114 23 0 chr11 70896457 70896501 -79887052 + (TG)n Simple_repeat Simple_repeat 1 45 0 461 298 30 24 chr11 70898000 70898168 -79885385 - MIR3 SINE MIR -14 194 26 234 192 0 68 chr11 70898822 70898895 -79884658 + C-rich Low_complexity Low_complexity 5 72 0 2076 123 0 27 chr11 70900683 70900820 -79882733 + AluSx SINE Alu 1 140 -172 2447 81 0 3 chr11 70900820 70901115 -79882438 + AluSc SINE Alu 1 294 -15 2076 123 0 27 chr11 70901115 70901278 -79882275 + AluSx SINE Alu 140 293 -19 1085 285 321 6 chr11 70901790 70903189 -79880364 + L2 LINE L2 1463 3312 -1 2078 206 83 50 chr11 70903542 70903724 -79879829 - L1MC3 LINE L1 -2 7783 7608 2096 116 10 0 chr11 70903724 70904018 -79879535 + AluSx SINE Alu 1 297 -15 2078 206 83 50 chr11 70904018 70904115 -79879438 - L1MC3 LINE L1 -177 7608 7516 1255 196 143 8 chr11 70904115 70904285 -79879268 - AluJo SINE Alu 0 302 156 203 61 30 0 chr11 70904285 70904318 -79879235 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1255 196 143 8 chr11 70904318 70904413 -79879140 - AluJo SINE Alu -146 156 1 2078 206 83 50 chr11 70904413 70904768 -79878785 - L1MC3 LINE L1 -269 7516 7127 337 354 20 34 chr11 70904893 70905040 -79878513 - MIR SINE MIR -7 255 111 * 398 286 202 8 chr11 70905031 70905269 -79878284 + L2 LINE L2 2250 2533 -781 413 384 98 16 chr11 70905490 70905745 -79877808 + L2 LINE L2 2997 3272 0 267 376 108 41 chr11 70905863 70906583 -79876970 - L2 LINE L2 -3 3269 2494 1042 58 0 0 chr11 70906611 70906748 -79876805 + AluY SINE Alu 172 308 -3 245 277 0 48 chr11 70907067 70907150 -79876403 + L2 LINE L2 2217 2295 -1019 2135 99 10 0 chr11 70907239 70907532 -79876021 - AluSq SINE Alu -17 296 1 313 337 68 25 chr11 70907545 70907708 -79875845 - MIR SINE MIR -71 191 22 214 347 53 35 chr11 70907745 70907915 -79875638 + L3 LINE CR1 1265 1437 -140 310 43 0 0 chr11 70907976 70908023 -79875530 - AluSx SINE Alu 0 301 255 1636 98 0 5 chr11 70908023 70908238 -79875315 - AluSx SINE Alu -98 214 1 198 336 8 61 chr11 70908529 70908660 -79874893 - L2 LINE L2 0 3272 3149 1801 112 105 0 chr11 70908938 70909214 -79874339 + AluSx SINE Alu 1 305 -7 244 237 0 34 chr11 70909240 70909299 -79874254 + MIR SINE MIR 104 160 -102 1948 119 13 10 chr11 70909353 70909655 -79873898 + AluJo SINE Alu 1 303 -9 1532 124 48 12 chr11 70909658 70909907 -79873646 + AluSg SINE Alu 35 292 -18 1743 152 7 17 chr11 70910170 70910459 -79873094 - AluJb SINE Alu -26 286 1 2310 104 0 0 chr11 70910728 70911036 -79872517 - AluSx SINE Alu -4 308 1 1233 165 52 120 chr11 70911096 70911320 -79872233 + AluJo SINE Alu 3 202 -100 1646 110 32 4 chr11 70911320 70911566 -79871987 + AluSx SINE Alu 43 295 -17 1233 165 52 120 chr11 70911566 70911650 -79871903 + AluJo SINE Alu 202 290 -12 799 326 129 23 chr11 70911792 70912234 -79871319 + L3 LINE CR1 1032 1520 -57 228 350 93 0 chr11 70912272 70912369 -79871184 + MIR SINE MIR 145 250 -12 26 50 0 0 chr11 70912969 70913009 -79870544 + GC_rich Low_complexity Low_complexity 1 40 0 1199 292 179 15 chr11 70914110 70914996 -79868557 - L2 LINE L2 0 3313 2269 194 299 126 11 chr11 70915014 70915101 -79868452 + MIR SINE MIR 54 150 -112 1375 191 69 43 chr11 70915463 70915570 -79867983 + AluJb SINE Alu 1 104 -208 2228 102 7 0 chr11 70915570 70915865 -79867688 - AluSg SINE Alu -13 297 1 1375 191 69 43 chr11 70915865 70916061 -79867492 + AluJb SINE Alu 104 312 0 226 259 65 28 chr11 70917332 70917440 -79866113 + MIR3 SINE MIR 9 120 -88 248 308 55 0 chr11 70917520 70917611 -79865942 - MIR SINE MIR -117 145 50 298 241 103 52 chr11 70917617 70917733 -79865820 - MIR SINE MIR -93 169 48 202 268 18 0 chr11 70919211 70919267 -79864286 + GA-rich Low_complexity Low_complexity 2 58 0 240 340 179 9 chr11 70919623 70919835 -79863718 + L2 LINE L2 2956 3203 -69 201 200 44 0 chr11 70920206 70920251 -79863302 + (CGGGG)n Simple_repeat Simple_repeat 2 48 0 209 289 62 41 chr11 70920290 70920387 -79863166 + L2 LINE L2 2994 3092 -180 224 197 28 42 chr11 70922619 70922690 -79860863 + GA-rich Low_complexity Low_complexity 1 70 0 468 162 8 94 chr11 70922881 70922998 -79860555 + MER81 DNA DNA 7 113 -1 324 188 0 0 chr11 70923357 70923421 -79860132 + (CA)n Simple_repeat Simple_repeat 1 64 0 212 149 21 0 chr11 70925768 70925815 -79857738 + MIR SINE MIR 82 129 -79 444 190 0 0 chr11 70928075 70928154 -79855399 + AluSp/q SINE Alu 225 303 -10 727 205 8 0 chr11 70928197 70928319 -79855234 - FLAM_C SINE Alu -10 123 1 2159 106 3 3 chr11 70928327 70928638 -79854915 - AluY SINE Alu 0 311 1 1187 188 29 81 chr11 70928673 70928981 -79854572 - AluJb SINE Alu -12 300 9 320 218 97 8 chr11 70929063 70929187 -79854366 + MER119 DNA MER1_type 448 582 -1 376 316 66 0 chr11 70929395 70929531 -79854022 - MIR SINE MIR -111 151 7 1842 113 63 3 chr11 70929810 70930094 -79853459 - AluSq SINE Alu -9 304 4 599 255 51 41 chr11 70930174 70930370 -79853183 + MIR SINE MIR 44 241 -21 2330 102 0 0 chr11 70930374 70930687 -79852866 + AluSq SINE Alu 1 313 0 541 251 55 44 chr11 70931688 70931871 -79851682 - MIR SINE MIR -34 228 44 1915 111 59 3 chr11 70931950 70932238 -79851315 + AluSq SINE Alu 1 304 -9 376 316 66 0 chr11 70932517 70932653 -79850900 + MIR SINE MIR 7 151 -111 320 218 97 8 chr11 70932861 70932985 -79850568 - MER119 DNA MER1_type -1 582 448 1492 161 30 79 chr11 70933067 70933372 -79850181 + AluJb SINE Alu 9 298 -14 2238 100 3 0 chr11 70933407 70933717 -79849836 + AluY SINE Alu 1 311 0 727 205 8 0 chr11 70933725 70933847 -79849706 + FLAM_C SINE Alu 1 123 -10 1911 104 3 94 chr11 70933895 70934223 -79849330 - AluSq SINE Alu -15 298 1 244 321 12 0 chr11 70934526 70934610 -79848943 - L2 LINE L2 -3 3310 3226 379 349 41 20 chr11 70934794 70934989 -79848564 - L2 LINE L2 -896 2418 2220 1772 138 17 21 chr11 70935213 70935502 -79848051 + AluJb SINE Alu 1 288 -24 625 214 0 36 chr11 70935504 70935644 -79847909 - FLAM_C SINE Alu -7 136 2 2204 110 10 0 chr11 70935690 70935999 -79847554 - AluSx SINE Alu 0 312 1 1732 142 93 0 chr11 70936053 70936321 -79847232 - AluJb SINE Alu -19 293 1 2170 125 0 0 chr11 70936434 70936745 -79846808 + AluY SINE Alu 1 311 0 281 265 0 29 chr11 70937414 70937482 -79846071 - L2 LINE L2 -2 3270 3205 202 284 54 0 chr11 70937541 70937615 -79845938 - MIR SINE MIR -1 261 184 2112 137 0 0 chr11 70937628 70937934 -79845619 + AluSx SINE Alu 1 306 -6 36 0 0 0 chr11 70937969 70938005 -79845548 + AT_rich Low_complexity Low_complexity 1 36 0 2085 131 0 0 chr11 70938005 70938303 -79845250 + AluSx SINE Alu 1 298 -14 1379 144 0 5 chr11 70938315 70938530 -79845023 + AluJo SINE Alu 8 221 -91 533 15 15 0 chr11 70938584 70938650 -79844903 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 2104 109 0 3 chr11 70938650 70938935 -79844618 - AluSc SINE Alu -25 284 1 442 285 62 7 chr11 70938941 70939085 -79844468 - MIR SINE MIR -98 164 13 216 0 0 0 chr11 70939106 70939130 -79844423 + (T)n Simple_repeat Simple_repeat 1 24 0 753 149 0 0 chr11 70939661 70939836 -79843717 + (TG)n Simple_repeat Simple_repeat 2 176 0 261 336 117 29 chr11 70940721 70940858 -79842695 - L2 LINE L2 -2 3311 3163 209 335 62 0 chr11 70940926 70941020 -79842533 + MIR SINE MIR 34 139 -69 1849 123 19 38 chr11 70941179 70941495 -79842058 - AluSx SINE Alu -2 310 1 234 324 0 0 chr11 70941577 70941651 -79841902 + MIR SINE MIR 79 152 -110 2335 89 0 6 chr11 70941761 70942075 -79841478 - AluSx SINE Alu 0 312 1 235 221 23 105 chr11 70942395 70942481 -79841072 - L2 LINE L2 -1 3271 3193 2037 107 3 10 chr11 70942644 70942957 -79840596 + AluSx SINE Alu 1 312 0 214 233 0 0 chr11 70943862 70943905 -79839648 - MIR SINE MIR -103 159 117 962 180 52 0 chr11 70945155 70945349 -79838204 - MIR SINE MIR -44 218 15 285 98 0 0 chr11 70947451 70947492 -79836061 + (GGAGA)n Simple_repeat Simple_repeat 1 41 0 386 309 175 18 chr11 70948354 70948691 -79834862 - L2 LINE L2 -14 3258 2869 486 281 110 6 chr11 70948999 70949163 -79834390 + MIR SINE MIR 20 200 -62 944 184 0 12 chr11 70949356 70949524 -79834029 + FRAM SINE Alu 4 169 -7 266 290 91 44 chr11 70949585 70949785 -79833768 + MIR3 SINE MIR 4 210 -52 281 256 25 13 chr11 70950343 70950432 -79833121 + MIR SINE MIR 59 145 -63 1674 163 0 53 chr11 70951800 70951977 -79831576 - AluJb SINE Alu -9 303 149 2468 74 0 0 chr11 70951977 70952286 -79831267 - AluSq SINE Alu -4 309 1 1674 163 0 53 chr11 70952286 70952428 -79831125 - AluJb SINE Alu -163 149 1 524 237 0 26 chr11 70952778 70952892 -79830661 + FLAM_A SINE Alu 1 111 -31 2203 106 0 0 chr11 70952892 70953194 -79830359 - AluSc SINE Alu -7 302 1 309 26 0 0 chr11 70953212 70953250 -79830303 + (CAA)n Simple_repeat Simple_repeat 3 40 0 1854 173 0 0 chr11 70953305 70953612 -79829941 + AluJo SINE Alu 1 307 -5 520 323 77 9 chr11 70953615 70953835 -79829718 - MIR SINE MIR 0 262 28 204 195 12 85 chr11 70954724 70954806 -79828747 + C-rich Low_complexity Low_complexity 4 79 0 210 393 57 8 chr11 70955684 70955806 -79827747 - L2 LINE L2 -5 3267 3140 211 178 111 0 chr11 70955826 70955871 -79827682 - L2 LINE L2 -1 3312 3263 182 343 118 20 chr11 70956528 70956773 -79826780 + L2 LINE L2 2370 2638 -676 736 194 118 32 chr11 70956779 70956965 -79826588 + MIR SINE MIR 3 204 -58 261 313 145 43 chr11 70957053 70957551 -79826002 + L2 LINE L2 2698 3241 -31 230 294 128 9 chr11 70957602 70957711 -79825842 + MIR SINE MIR 24 145 -63 2032 119 0 32 chr11 70960376 70960688 -79822865 + AluJb SINE Alu 1 302 -10 262 341 104 11 chr11 70960716 70960898 -79822655 + MIR SINE MIR 32 230 -32 281 375 40 23 chr11 70961001 70961177 -79822376 - L2 LINE L2 -96 3176 2998 390 328 152 25 chr11 70961186 70961384 -79822169 - MIR SINE MIR -1 261 39 225 337 60 0 chr11 70962587 70962670 -79820883 - L2 LINE L2 -224 3048 2961 36 0 0 0 chr11 70962954 70962990 -79820563 + GC_rich Low_complexity Low_complexity 1 36 0 394 358 90 30 chr11 70964387 70964753 -79818800 + L2 LINE L2 2872 3259 -13 251 169 31 0 chr11 70965114 70965179 -79818374 + CT-rich Low_complexity Low_complexity 3 69 0 1515 193 10 17 chr11 70965192 70965492 -79818061 - AluJb SINE Alu -3 309 12 230 175 0 15 chr11 70965494 70965546 -79818007 - MIR SINE MIR -52 156 108 186 213 150 62 chr11 70965773 70965853 -79817700 - MIR3 SINE MIR -36 172 86 217 232 0 36 chr11 70968815 70968871 -79814682 - L2 LINE L2 -252 3061 3008 1619 149 4 22 chr11 70968989 70969257 -79814296 - AluJb SINE Alu -49 263 1 198 333 49 20 chr11 70969717 70969819 -79813734 + MIR SINE MIR 59 163 -99 267 286 120 8 chr11 70969940 70970073 -79813480 - MIR SINE MIR -7 255 108 245 250 0 26 chr11 70971034 70971190 -79812363 + (TG)n Simple_repeat Simple_repeat 1 152 0 466 193 0 37 chr11 70971259 70971446 -79812107 + (TG)n Simple_repeat Simple_repeat 1 180 0 1072 110 18 0 chr11 70971923 70972086 -79811467 - AluSc SINE Alu -6 303 138 503 339 114 22 chr11 70972186 70972693 -79810860 + L2 LINE L2 1441 1994 -1320 330 316 149 43 chr11 70972691 70973014 -79810539 - L2 LINE L2 -1 3271 2915 * 268 310 222 17 chr11 70973015 70973312 -79810241 - L2 LINE L2 -1018 2296 1939 269 317 14 19 chr11 70973383 70973534 -79810019 + L2 LINE L2 2986 3198 -74 225 94 0 0 chr11 70975037 70975069 -79808484 + (TAA)n Simple_repeat Simple_repeat 1 32 0 711 272 21 11 chr11 70975117 70975308 -79808245 - MIR SINE MIR -56 206 14 266 300 15 52 chr11 70977564 70977695 -79805858 + MIR SINE MIR 41 168 -40 1531 248 164 5 chr11 70977997 70978639 -79804914 + L2 LINE L2 2421 3167 -146 1059 106 38 12 chr11 70978640 70978800 -79804753 + AluSg/x SINE Alu 129 292 -18 270 81 0 0 chr11 70978800 70978837 -79804716 + (GGGGA)n Simple_repeat Simple_repeat 3 39 0 212 234 0 0 chr11 70978845 70978869 -79804684 + GA-rich Low_complexity Low_complexity 4 27 -23 3985 91 0 6 chr11 70978869 70979383 -79804170 + MER9 LTR ERVK 1 511 0 212 234 0 0 chr11 70979383 70979405 -79804148 + GA-rich Low_complexity Low_complexity 26 50 0 7460 38 2 6 chr11 70979405 70980572 -79802981 + L1PA4 LINE L1 4992 6155 0 640 138 11 58 chr11 70980592 70980780 -79802773 + GA-rich Low_complexity Low_complexity 2 180 0 324 150 53 158 chr11 70980785 70980833 -79802720 + L2 LINE L2 3158 3209 -104 886 231 52 19 chr11 70980833 70981045 -79802508 - MER20 DNA MER1_type 0 219 1 324 150 53 158 chr11 70981045 70981129 -79802424 + L2 LINE L2 3209 3276 -37 343 256 171 8 chr11 70981287 70981404 -79802149 - MIR3 SINE MIR -67 141 6 1962 119 24 0 chr11 70981462 70981756 -79801797 + AluSq SINE Alu 1 301 -12 227 332 183 11 chr11 70981758 70982107 -79801446 - L2 LINE L2 -337 2977 2569 481 191 7 7 chr11 70982732 70982873 -79800680 + (TGGA)n Simple_repeat Simple_repeat 2 142 0 542 225 6 0 chr11 70982892 70983065 -79800488 + (TGGA)n Simple_repeat Simple_repeat 1 174 0 189 237 0 0 chr11 70983079 70983138 -79800415 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 546 195 6 17 chr11 70983178 70983352 -79800201 + (TGGA)n Simple_repeat Simple_repeat 3 174 0 195 284 0 0 chr11 70983364 70983452 -79800101 + (TGGA)n Simple_repeat Simple_repeat 4 91 0 243 155 28 14 chr11 70984557 70984628 -79798925 + (TG)n Simple_repeat Simple_repeat 2 73 0 601 262 103 9 chr11 70985274 70985496 -79798057 - MIR SINE MIR 0 262 2 245 314 25 8 chr11 70985496 70985600 -79797953 - MIR3 SINE MIR -53 155 50 415 267 47 52 chr11 70985676 70985848 -79797705 + MIR SINE MIR 3 173 -89 2109 67 7 3 chr11 70986004 70986286 -79797267 - AluY SINE Alu -28 283 1 273 291 12 23 chr11 70986636 70986722 -79796831 - L2 LINE L2 -15 3257 3173 2038 119 3 17 chr11 70986854 70987175 -79796378 - AluSq SINE Alu 0 313 1 2170 103 7 0 chr11 70987178 70987478 -79796075 - AluSp SINE Alu -11 302 1 610 159 31 106 chr11 70987482 70987631 -79795922 - L1 LINE L1 -1679 4467 4308 1997 134 0 0 chr11 70987631 70987935 -79795618 - AluSx SINE Alu 0 304 1 610 159 31 106 chr11 70987935 70987953 -79795600 - L1 LINE L1 -1838 4308 4290 2146 124 0 0 chr11 70987953 70988252 -79795301 - AluSx SINE Alu -13 299 1 610 159 31 106 chr11 70988252 70988309 -79795244 - L1 LINE L1 -1856 4290 4258 294 132 0 0 chr11 70988309 70988362 -79795191 + (TG)n Simple_repeat Simple_repeat 1 53 0 1084 191 8 120 chr11 70988364 70988746 -79794807 - L1 LINE L1 -1894 4252 3914 440 205 0 0 chr11 70988778 70988890 -79794663 - L1 LINE L1 -2191 3955 3844 1681 159 7 13 chr11 70988890 70989192 -79794361 - AluSx SINE Alu -12 300 1 2163 99 10 10 chr11 70989192 70989496 -79794057 - AluSx SINE Alu -8 304 1 198 103 0 0 chr11 70989714 70989743 -79793810 + (TGGGGG)n Simple_repeat Simple_repeat 3 31 0 577 309 57 0 chr11 70991192 70991367 -79792186 + MER91A DNA MER1_type 10 194 -2 320 266 21 0 chr11 70991660 70991788 -79791765 - MERVL LTR ERVL -937 4548 4452 1828 102 71 34 chr11 70991817 70992111 -79791442 + AluSq SINE Alu 1 305 -8 990 258 24 93 chr11 70992207 70992542 -79791011 + MLT1J LTR MaLR 11 301 -210 2521 56 0 0 chr11 70992542 70992846 -79790707 + AluY SINE Alu 1 304 -7 990 258 24 93 chr11 70992846 70993017 -79790536 + MLT1J LTR MaLR 301 482 -29 1777 230 72 41 chr11 70993034 70993600 -79789953 - MLT1G1 LTR MaLR -4 591 8 1066 261 30 62 chr11 70993808 70993841 -79789712 + MLT1H LTR MaLR 72 105 -444 2358 103 0 0 chr11 70993841 70994153 -79789400 + AluSx SINE Alu 1 312 0 1066 261 30 62 chr11 70994153 70994590 -79788963 + MLT1H LTR MaLR 105 527 -22 258 264 72 40 chr11 70994888 70995013 -79788540 + L2 LINE L2 2323 2451 -863 2010 87 10 32 chr11 70995026 70995337 -79788216 - AluY SINE Alu -7 304 1 1570 147 15 11 chr11 70995444 70995717 -79787836 + MER1B DNA MER1_type 66 339 0 1844 211 41 8 chr11 70995717 70996201 -79787352 - L1MB3 LINE L1 -302 5819 5354 1622 156 38 7 chr11 70996208 70996497 -79787056 - L1MC1 LINE L1 -6 6327 6030 359 89 0 0 chr11 70996599 70996655 -79786898 - pTR5 LTR ERV1 -1637 801 746 1743 131 35 0 chr11 70996655 70996969 -79786584 + MER84 LTR ERVI 89 413 -94 1592 86 0 14 chr11 70996970 70997180 -79786373 + AluSg SINE Alu 1 207 -103 198 0 0 0 chr11 70997208 70997230 -79786323 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 281 330 54 0 chr11 70997241 70997353 -79786200 - MER41B-int LTR ERV1 -5563 1086 969 3702 106 8 6 chr11 70997353 70997863 -79785690 - MER9 LTR ERVK 0 511 1 254 323 10 0 chr11 70998525 70998624 -79784929 - MER41B-int LTR ERV1 -6282 367 268 1072 170 17 17 chr11 70999288 70999550 -79784003 + MER4D LTR ERV1 506 903 0 528 272 20 12 chr11 70999719 70999820 -79783733 + MIR SINE MIR 63 169 -93 2123 115 0 7 chr11 70999820 71000116 -79783437 + AluSc SINE Alu 1 294 -15 528 272 20 12 chr11 71000116 71000187 -79783366 + MIR SINE MIR 169 238 -24 807 149 4 114 chr11 71000258 71000369 -79783184 - MER41B LTR ERV1 -12 597 565 1986 126 18 0 chr11 71000369 71000692 -79782861 - AluSx SINE Alu 0 328 1 807 149 4 114 chr11 71000692 71000841 -79782712 - MER41B LTR ERV1 -44 565 401 2727 70 0 63 chr11 71000844 71001286 -79782267 + MER4B LTR ERV1 1 414 -196 1216 105 16 93 chr11 71001296 71001363 -79782190 + MER4B LTR ERV1 382 453 -157 2208 117 0 0 chr11 71001363 71001662 -79781891 - AluSx SINE Alu -13 299 1 1216 105 16 93 chr11 71001662 71001842 -79781711 + MER4B LTR ERV1 453 610 0 1859 181 5 34 chr11 71001845 71002255 -79781298 - MER41B LTR ERV1 -237 398 1 536 311 94 8 chr11 71002463 71002717 -79780836 - L2 LINE L2 -461 2853 2578 1173 136 0 0 chr11 71002813 71002982 -79780571 - AluSg/x SINE Alu -20 292 124 352 156 0 89 chr11 71002990 71003035 -79780518 - MIR SINE MIR -67 195 160 1833 153 7 3 chr11 71003035 71003330 -79780223 - AluSx SINE Alu -16 296 1 352 156 0 89 chr11 71003330 71003374 -79780179 - MIR SINE MIR -102 160 114 1869 131 45 58 chr11 71003463 71003676 -79779877 - MSTC LTR MaLR -5 423 209 1778 143 109 0 chr11 71003676 71003944 -79779609 - AluSx SINE Alu -17 295 1 1869 131 45 58 chr11 71003944 71004099 -79779454 - MSTC LTR MaLR -219 209 53 4258 141 83 50 chr11 71004099 71004595 -79778958 + MER4D LTR ERV1 1 540 -363 2442 73 3 3 chr11 71004595 71004896 -79778657 + AluY SINE Alu 3 303 -8 4258 141 83 50 chr11 71004896 71005273 -79778280 + MER4D LTR ERV1 540 903 0 1869 131 45 58 chr11 71005273 71005326 -79778227 - MSTC LTR MaLR -375 53 1 2432 118 24 73 chr11 71005349 71005463 -79778090 - MSTA LTR MaLR 0 428 310 2339 115 3 0 chr11 71005463 71005775 -79777778 + AluSp SINE Alu 1 313 0 2432 118 24 73 chr11 71005775 71006110 -79777443 - MSTA LTR MaLR -118 310 1 888 257 84 14 chr11 71006151 71006631 -79776922 - L2 LINE L2 -243 3070 2553 249 402 0 0 chr11 71006655 71006752 -79776801 - L2 LINE L2 -3 3269 3173 549 291 90 29 chr11 71006770 71006920 -79776633 + MER112 DNA MER1_type 1 173 -87 588 29 0 0 chr11 71006920 71006990 -79776563 + (CTATT)n Simple_repeat Simple_repeat 4 73 0 549 291 90 29 chr11 71006990 71007083 -79776470 + MER112 DNA MER1_type 173 259 -1 2022 156 7 42 chr11 71007187 71007591 -79775962 - MLT1B LTR MaLR 0 390 1 226 305 67 19 chr11 71007989 71008094 -79775459 - L2 LINE L2 -639 2675 2566 * 284 301 8 75 chr11 71008086 71008219 -79775334 - MIR SINE MIR 0 262 139 2003 139 11 3 chr11 71008220 71008507 -79775046 - AluJb SINE Alu -23 289 1 2073 86 71 0 chr11 71008513 71008805 -79774748 - AluSc SINE Alu 0 311 1 369 0 0 0 chr11 71008805 71008846 -79774707 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2295 103 0 0 chr11 71008846 71009128 -79774425 - AluSg SINE Alu -28 282 1 2226 98 0 10 chr11 71009133 71009428 -79774125 - AluSx SINE Alu -20 292 1 1768 154 0 28 chr11 71009466 71009751 -79773802 + AluJb SINE Alu 21 297 -15 1313 139 0 0 chr11 71009756 71009943 -79773610 - AluSg/x SINE Alu 0 312 126 275 312 16 58 chr11 71009944 71010133 -79773420 - L1MC5 LINE L1 -41 7920 7740 2443 73 3 22 chr11 71010480 71010793 -79772760 + AluY SINE Alu 1 307 -4 429 227 23 61 chr11 71010823 71010955 -79772598 + MIR SINE MIR 38 164 -98 2205 109 0 3 chr11 71010961 71011246 -79772307 + AluSc SINE Alu 1 284 -25 533 15 15 0 chr11 71011246 71011312 -79772241 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 1444 144 0 5 chr11 71011366 71011581 -79771972 - AluJo SINE Alu -91 221 8 2183 127 0 3 chr11 71011593 71011893 -79771660 - AluSx SINE Alu -13 299 1 36 0 0 0 chr11 71011893 71011929 -79771624 + AT_rich Low_complexity Low_complexity 1 36 0 2203 133 0 0 chr11 71011968 71012270 -79771283 - AluSx SINE Alu -10 302 1 196 284 54 0 chr11 71012283 71012357 -79771196 + MIR SINE MIR 184 261 -1 273 265 0 29 chr11 71012416 71012484 -79771069 + L2 LINE L2 3205 3270 -2 2280 120 0 0 chr11 71013156 71013465 -79770088 - AluY SINE Alu -2 309 1 1813 142 93 0 chr11 71013578 71013846 -79769707 + AluJb SINE Alu 1 293 -19 2301 110 10 0 chr11 71013900 71014209 -79769344 + AluSx SINE Alu 1 312 0 544 220 0 8 chr11 71014255 71014373 -79769180 + FLAM_C SINE Alu 2 118 -25 1864 138 17 21 chr11 71014397 71014686 -79768867 - AluJb SINE Alu -24 288 1 327 348 33 22 chr11 71014921 71015105 -79768448 + L2 LINE L2 2233 2418 -896 239 289 60 0 chr11 71015289 71015372 -79768181 + L2 LINE L2 3226 3313 0 2489 61 0 7 chr11 71015675 71015971 -79767582 + AluY SINE Alu 1 294 -17 2138 250 25 21 chr11 71015971 71016062 -79767491 + L1MD1 LINE L1 4290 4379 -1767 1838 170 0 34 chr11 71016062 71016385 -79767168 - AluSx SINE Alu 0 312 1 2138 250 25 21 chr11 71016385 71017008 -79766545 + L1MD1 LINE L1 4379 5007 -1139 1648 169 44 27 chr11 71017005 71017106 -79766447 + L1MD1 LINE L1 5485 5583 -659 * 2269 120 3 0 chr11 71017106 71017414 -79766139 - AluSg SINE Alu -1 309 1 1648 169 44 27 chr11 71017414 71017650 -79765903 + L1MD1 LINE L1 5583 5828 -414 2270 92 7 26 chr11 71017651 71017787 -79765766 + AluSx SINE Alu 1 138 -174 2276 92 3 0 chr11 71017787 71018107 -79765446 + AluSp SINE Alu 1 321 0 2270 92 7 26 chr11 71018107 71018273 -79765280 + AluSx SINE Alu 138 298 -14 2564 67 0 0 chr11 71018402 71018743 -79764810 + L1PA6 LINE L1 5814 6154 0 2545 56 0 7 chr11 71018855 71019158 -79764395 - AluY SINE Alu -10 301 1 2667 51 0 6 chr11 71019239 71019550 -79764003 + AluSp SINE Alu 1 309 -4 412 76 45 0 chr11 71019662 71019728 -79763825 - AluS SINE Alu -234 69 1 1921 173 3 10 chr11 71019854 71020166 -79763387 + AluJo SINE Alu 1 310 -2 2082 106 26 0 chr11 71020400 71020707 -79762846 + AluSx SINE Alu 2 315 0 2480 68 0 0 chr11 71020823 71021116 -79762437 - AluY SINE Alu -18 293 1 454 229 17 8 chr11 71021116 71021234 -79762319 - L1M4 LINE L1 -1896 4250 4132 424 169 0 13 chr11 71021602 71021679 -79761874 + MER81 DNA DNA 38 113 -1 324 188 0 0 chr11 71022040 71022104 -79761449 + (CA)n Simple_repeat Simple_repeat 1 64 0 849 121 0 9 chr11 71022649 71022817 -79760736 + AluSg/x SINE Alu 182 348 0 1574 118 0 0 chr11 71023439 71023650 -79759903 - AluSp SINE Alu -102 211 1 406 233 15 118 chr11 71024138 71024267 -79759286 + LTR41 LTR ERVL 530 618 -155 1978 166 3 6 chr11 71024267 71024580 -79758973 - AluJb SINE Alu 0 312 1 406 233 15 118 chr11 71024580 71024721 -79758832 + LTR41 LTR ERVL 618 772 -1 1850 174 6 37 chr11 71024735 71025056 -79758497 - AluJo SINE Alu -1 311 1 2385 99 0 0 chr11 71025082 71025376 -79758177 + AluSx SINE Alu 1 294 -18 1956 142 7 10 chr11 71025530 71025825 -79757728 - AluJb SINE Alu -18 294 1 1657 191 52 9 chr11 71025999 71026345 -79757208 - MLT1A1 LTR MaLR 0 365 5 449 259 66 42 chr11 71026499 71026665 -79756888 - L1MEd LINE L1 -5711 408 239 808 119 0 0 chr11 71026743 71026852 -79756701 - AluSg/x SINE Alu -15 294 186 261 118 0 0 chr11 71026982 71027033 -79756520 + (TA)n Simple_repeat Simple_repeat 1 51 0 1682 146 3 37 chr11 71027080 71027403 -79756150 + AluSx SINE Alu 1 312 0 1106 265 41 46 chr11 71027403 71027841 -79755712 + MLT1H LTR MaLR 92 527 -22 207 238 50 50 chr11 71028165 71028266 -79755287 + L2 LINE L2 2351 2451 -863 2192 105 17 7 chr11 71028281 71028576 -79754977 - AluSg SINE Alu -10 300 3 458 300 113 17 chr11 71028577 71028817 -79754736 + L2 LINE L2 2392 2654 -660 2389 81 3 7 chr11 71028939 71029247 -79754306 - AluY SINE Alu -4 307 1 1113 29 7 0 chr11 71029247 71029386 -79754167 - L1PA6 LINE L1 -325 5829 5690 2913 225 12 57 chr11 71029391 71029537 -79754016 + L1MC2 LINE L1 4375 4526 -1620 1652 193 7 0 chr11 71029537 71029861 -79753692 + AluJb SINE Alu 10 335 0 2913 225 12 57 chr11 71029861 71030105 -79753448 + L1MC2 LINE L1 4526 4780 -1366 2275 110 0 0 chr11 71030105 71030397 -79753156 + AluSg SINE Alu 1 292 -18 2913 225 12 57 chr11 71030397 71030949 -79752604 + L1MC2 LINE L1 4780 5277 -869 2300 102 3 10 chr11 71030950 71031263 -79752290 + AluSx SINE Alu 1 311 -1 2228 172 24 22 chr11 71031264 71031658 -79751895 + L1MC2 LINE L1 5429 5826 -518 2335 116 0 10 chr11 71031658 71031969 -79751584 + AluSq SINE Alu 3 310 -3 2228 172 24 22 chr11 71031969 71032033 -79751520 + L1MC2 LINE L1 5826 5888 -456 2399 100 0 0 chr11 71032033 71032334 -79751219 + AluSq SINE Alu 1 301 -12 360 0 0 0 chr11 71032336 71032376 -79751177 + (CAT)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chr11 71032426 71032454 -79751099 + AT_rich Low_complexity Low_complexity 1 28 0 685 237 5 11 chr11 71032454 71032644 -79750909 + MER20B DNA MER1_type 226 414 -369 637 207 0 0 chr11 71032645 71032790 -79750763 + L1MA4 LINE L1 6156 6300 0 2162 117 7 7 chr11 71032794 71033127 -79750426 + AluSq SINE Alu 1 333 0 2230 103 0 7 chr11 71033161 71033453 -79750100 + AluSg SINE Alu 1 290 -20 302 93 0 19 chr11 71033467 71033477 -79750076 + (GAAAA)n Simple_repeat Simple_repeat 3 12 -43 2296 127 0 0 chr11 71033477 71033785 -79749768 + AluSx SINE Alu 1 308 -4 302 93 0 19 chr11 71033785 71033828 -79749725 + (GAAAA)n Simple_repeat Simple_repeat 12 55 0 550 255 137 29 chr11 71033844 71034122 -79749431 + MER20B DNA MER1_type 439 746 -37 205 307 55 16 chr11 71034231 71034358 -79749195 + L2 LINE L2 2852 2983 -289 653 236 188 12 chr11 71034449 71034779 -79748774 + MER113 DNA MER1_type? 90 477 -44 219 361 12 0 chr11 71034811 71034894 -79748659 - L2 LINE L2 -48 3224 3141 1929 84 0 132 chr11 71034950 71035283 -79748270 + AluSx SINE Alu 1 289 -23 248 179 103 13 chr11 71035702 71035780 -79747773 - L1M4 LINE L1 -2501 3881 3797 212 0 0 35 chr11 71035819 71035848 -79747705 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2201 90 7 0 chr11 71035850 71036128 -79747425 - AluSx SINE Alu -32 280 1 1032 194 51 0 chr11 71036128 71036381 -79747172 - L1M4 LINE L1 -2563 3819 3554 2323 97 0 3 chr11 71036395 71036693 -79746860 - AluY SINE Alu -14 297 1 333 143 0 104 chr11 71036693 71036770 -79746783 + Tigger1 DNA MER2_type 2 70 -2348 1335 53 0 0 chr11 71036770 71036922 -79746631 + AluY SINE Alu 145 296 -15 2133 127 47 0 chr11 71036922 71037260 -79746293 + Tigger1 DNA MER2_type 296 649 -1769 1648 143 4 8 chr11 71037260 71037511 -79746042 + AluJb SINE Alu 1 250 -62 4489 106 35 57 chr11 71037530 71038112 -79745441 + Tigger1 DNA MER2_type 1658 2251 -167 2379 93 0 22 chr11 71038112 71038425 -79745128 - AluSx SINE Alu -6 306 1 4489 106 35 57 chr11 71038425 71038517 -79745036 + Tigger1 DNA MER2_type 2251 2315 -103 2154 76 58 0 chr11 71038517 71038794 -79744759 - AluSq SINE Alu -20 293 1 4489 106 35 57 chr11 71038794 71038895 -79744658 + Tigger1 DNA MER2_type 2315 2417 -1 2266 218 26 38 chr11 71038898 71039151 -79744402 - L1M4 LINE L1 -2828 3554 3300 2201 101 0 18 chr11 71039151 71039459 -79744094 - AluSc SINE Alu 0 303 1 2266 218 26 38 chr11 71039459 71039891 -79743662 - L1M4 LINE L1 -3082 3300 2876 322 155 0 28 chr11 71039889 71039960 -79743593 - L1M4 LINE L1 -3885 2499 2431 * 1764 179 0 7 chr11 71039962 71040241 -79743312 - AluJb SINE Alu -26 286 10 2160 96 4 0 chr11 71040258 71040528 -79743025 - AluSp SINE Alu -16 297 27 2521 55 3 13 chr11 71040528 71040837 -79742716 + AluY SINE Alu 1 306 -5 296 51 0 0 chr11 71040839 71040878 -79742675 - AluSp SINE Alu -264 39 1 762 139 41 8 chr11 71040910 71041032 -79742521 + FLAM_C SINE Alu 2 127 -6 688 134 29 70 chr11 71041034 71041107 -79742446 - L1M4 LINE L1 -3940 2444 2370 2199 135 0 0 chr11 71041107 71041403 -79742150 + AluSx SINE Alu 1 296 -16 688 134 29 70 chr11 71041403 71041500 -79742053 - L1M4 LINE L1 -4014 2370 2281 1644 189 47 0 chr11 71041501 71041657 -79741896 - AluJo SINE Alu -22 290 114 194 0 0 37 chr11 71041657 71041684 -79741869 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1644 189 47 0 chr11 71041684 71041802 -79741751 - AluJo SINE Alu -198 114 3 1039 312 79 39 chr11 71041803 71042447 -79741106 - L1M4 LINE L1 -5869 673 4 184 238 0 0 chr11 71042454 71042503 -79741050 + MIR SINE MIR 101 150 -58 2116 117 20 10 chr11 71042555 71042853 -79740700 + AluSx SINE Alu 1 301 -11 2241 109 7 7 chr11 71043390 71043694 -79739859 - AluSx SINE Alu -8 304 1 2396 78 20 0 chr11 71044223 71044519 -79739034 - AluSp SINE Alu -11 302 1 200 314 35 0 chr11 71044728 71044814 -79738739 - MIR SINE MIR -167 95 7 189 333 11 0 chr11 71044877 71044964 -79738589 + L2 LINE L2 2583 2670 -644 * 362 358 120 7 chr11 71044943 71045217 -79738336 + L2 LINE L2 2968 3272 0 235 257 225 23 chr11 71045947 71046078 -79737475 + MIR3 SINE MIR 12 164 -61 323 264 76 7 chr11 71046933 71047077 -79736476 + MIR3 SINE MIR 55 208 0 315 244 23 12 chr11 71047216 71047302 -79736251 - MIR3 SINE MIR -15 193 107 2215 106 3 13 chr11 71047813 71048116 -79735437 - AluSx SINE Alu -12 300 1 648 120 0 169 chr11 71048154 71048253 -79735300 - FLAM_C SINE Alu -184 118 48 1803 92 149 0 chr11 71048253 71048514 -79735039 - AluSg1 SINE Alu -9 300 1 648 120 0 169 chr11 71048514 71048556 -79734997 - FLAM_C SINE Alu -254 48 1 225 308 62 0 chr11 71049013 71049078 -79734475 - L2 LINE L2 -53 3219 3151 184 157 86 86 chr11 71049613 71049683 -79733870 + MIR SINE MIR 34 103 -105 1774 136 29 4 chr11 71049991 71050263 -79733290 + AluJb SINE Alu 17 295 -17 311 322 14 68 chr11 71050399 71050545 -79733008 - MIR SINE MIR -98 164 27 225 162 0 0 chr11 71050565 71050602 -79732951 - MIR SINE MIR -59 149 113 364 306 176 5 chr11 71051377 71051576 -79731977 - MIR SINE MIR -14 248 16 201 201 0 70 chr11 71052203 71052279 -79731274 + MIR SINE MIR 93 145 -63 209 256 171 0 chr11 71052925 71053007 -79730546 + L2 LINE L2 3213 3308 -5 336 188 0 0 chr11 71053137 71053201 -79730352 - L2 LINE L2 0 3313 3250 198 291 161 62 chr11 71053321 71053744 -79729809 + L2 LINE L2 2804 3268 -4 240 239 42 14 chr11 71053808 71053879 -79729674 + L2 LINE L2 3235 3307 -6 2605 36 0 7 chr11 71053879 71054183 -79729370 + AluY SINE Alu 1 302 -9 195 42 0 0 chr11 71054189 71054213 -79729340 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 535 202 26 9 chr11 71055470 71055584 -79727969 - L1ME LINE L1 -619 5547 5432 2320 116 0 0 chr11 71055615 71055926 -79727627 + AluY SINE Alu 1 311 0 1360 83 6 11 chr11 71055927 71056107 -79727446 + AluSg/x SINE Alu 118 296 -14 1487 149 6 62 chr11 71056108 71056208 -79727345 + L1MD1 LINE L1 5819 5923 -319 2163 132 0 22 chr11 71056208 71056519 -79727034 - AluSx SINE Alu -8 304 1 1487 149 6 62 chr11 71056519 71056739 -79726814 + L1MD1 LINE L1 5923 6121 -121 2234 88 3 13 chr11 71056739 71057044 -79726509 - AluSg SINE Alu -8 302 1 305 62 42 0 chr11 71057044 71057092 -79726461 - Alu SINE Alu -252 50 1 * 404 103 19 50 chr11 71057092 71057190 -79726363 - AluS SINE Alu -228 75 1 730 93 76 0 chr11 71057191 71057309 -79726244 + L1MD1 LINE L1 6108 6234 -8 2326 94 6 25 chr11 71057310 71057628 -79725925 + AluSx SINE Alu 1 312 0 1914 181 3 0 chr11 71057643 71057952 -79725601 + AluJo SINE Alu 3 312 0 2305 117 10 0 chr11 71057955 71058264 -79725289 + AluSx SINE Alu 1 312 0 272 29 0 0 chr11 71058487 71058521 -79725032 - MLT1D LTR MaLR -20 485 452 797 156 11 22 chr11 71058895 71058946 -79724607 + CT-rich Low_complexity Low_complexity 4 54 -126 2195 101 31 3 chr11 71058946 71059232 -79724321 - AluSg SINE Alu -16 294 1 797 156 11 22 chr11 71059232 71059359 -79724194 + CT-rich Low_complexity Low_complexity 54 180 0 2281 109 30 0 chr11 71059376 71059678 -79723875 - AluSx SINE Alu -1 311 1 1921 173 3 10 chr11 71059804 71060116 -79723437 + AluJo SINE Alu 1 310 -2 2316 109 0 0 chr11 71060350 71060652 -79722901 + AluSx SINE Alu 2 303 -9 2491 195 32 116 chr11 71060652 71060825 -79722728 + L1ME1 LINE L1 5163 5349 -817 2273 119 3 3 chr11 71060825 71061137 -79722416 + AluSx SINE Alu 1 312 0 2491 195 32 116 chr11 71061137 71061250 -79722303 + L1ME1 LINE L1 5349 5470 -696 1069 142 0 0 chr11 71061250 71061412 -79722141 + U1 snRNA snRNA 3 164 -1 2491 195 32 116 chr11 71061412 71061424 -79722129 + L1ME1 LINE L1 5470 5481 -685 2334 104 0 19 chr11 71061424 71061740 -79721813 - AluSg SINE Alu 0 310 1 2491 195 32 116 chr11 71061740 71062140 -79721413 + L1ME1 LINE L1 5481 5913 -253 1986 152 7 0 chr11 71062140 71062437 -79721116 + AluSx SINE Alu 2 300 -12 2491 195 32 116 chr11 71062437 71062660 -79720893 + L1ME1 LINE L1 5913 6153 -13 1824 181 7 0 chr11 71062660 71062958 -79720595 + AluJo SINE Alu 1 300 -12 2491 195 32 116 chr11 71062958 71063058 -79720495 + L1ME1 LINE L1 6153 6102 -64 2247 75 0 41 chr11 71063058 71063392 -79720161 - AluSx SINE Alu 0 322 1 2491 195 32 116 chr11 71063392 71063438 -79720115 + L1ME1 LINE L1 6101 6149 -17 2285 86 7 26 chr11 71063783 71064086 -79719467 - AluSc SINE Alu -12 297 1 516 211 0 18 chr11 71064137 71064246 -79719307 + L1MC4a LINE L1 7203 7309 -499 1006 168 0 7 chr11 71064253 71064408 -79719145 + AluJb SINE Alu 138 291 -21 1446 225 40 0 chr11 71064560 71064907 -79718646 - L1M4 LINE L1 -1812 4334 3974 1747 117 0 26 chr11 71065036 71065326 -79718227 + AluSc SINE Alu 52 309 0 2210 69 0 28 chr11 71065698 71065989 -79717564 - AluY SINE Alu 0 311 29 2362 83 7 0 chr11 71066018 71066307 -79717246 - AluSp SINE Alu -22 291 1 1519 187 60 0 chr11 71066443 71066577 -79716976 + AluSq SINE Alu 1 126 -187 2535 61 3 7 chr11 71066577 71066887 -79716666 + AluY SINE Alu 1 309 -2 1519 187 60 0 chr11 71066887 71067036 -79716517 + AluSq SINE Alu 126 301 -12 194 61 0 30 chr11 71067116 71067149 -79716404 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 762 225 139 90 chr11 71067149 71067394 -79716159 - L1MC/D LINE L1 -2067 5741 5509 2211 98 0 84 chr11 71067394 71067729 -79715824 - AluSp SINE Alu -5 308 2 2396 91 3 3 chr11 71067731 71068040 -79715513 - AluSq SINE Alu -4 309 1 762 225 139 90 chr11 71068040 71068137 -79715416 - L1MC/D LINE L1 -2299 5509 5379 302 162 54 27 chr11 71068137 71068211 -79715342 - MER116 DNA Mariner -4 76 1 2566 62 0 7 chr11 71068317 71068622 -79714931 - AluY SINE Alu -8 303 1 348 41 0 20 chr11 71068632 71068681 -79714872 - AluY SINE Alu -254 48 1 2212 133 0 3 chr11 71068790 71069098 -79714455 - AluJb SINE Alu -5 307 1 338 200 14 0 chr11 71069112 71069182 -79714371 - L1MC4a LINE L1 -504 7304 7234 2027 88 42 18 chr11 71069182 71069466 -79714087 + AluSc SINE Alu 1 291 -18 410 239 0 11 chr11 71069483 71069575 -79713978 - MLT1F1 LTR MaLR -442 125 35 987 170 9 31 chr11 71069584 71069807 -79713746 - L1MC3 LINE L1 -688 7097 6880 2479 66 0 13 chr11 71069816 71070119 -79713434 - AluY SINE Alu -12 299 1 1039 183 6 11 chr11 71070119 71070294 -79713259 - FRAM SINE Alu -6 170 1 2434 80 0 0 chr11 71070298 71070598 -79712955 - AluSx SINE Alu -12 300 1 261 118 0 0 chr11 71070644 71070695 -79712858 + (TA)n Simple_repeat Simple_repeat 2 52 0 808 119 0 0 chr11 71070825 71070934 -79712619 + AluSg/x SINE Alu 186 294 -15 449 259 66 42 chr11 71071012 71071178 -79712375 + L1MEd LINE L1 239 408 -5711 1657 191 52 9 chr11 71071332 71071678 -79711875 + MLT1A1 LTR MaLR 5 365 0 856 125 0 22 chr11 71071944 71072102 -79711451 - FLAM_C SINE Alu 0 155 1 569 230 64 27 chr11 71072103 71072148 -79711405 - L1M4 LINE L1 -1843 4303 4261 2234 71 4 4 chr11 71072148 71072490 -79711063 - AluY SINE Alu 0 342 1 569 230 64 27 chr11 71072490 71072630 -79710923 - L1M4 LINE L1 -1885 4261 4110 1071 158 0 0 chr11 71072635 71072787 -79710766 + AluJb SINE Alu 145 296 -16 616 218 42 0 chr11 71072790 71072932 -79710621 - L1M4 LINE L1 -2031 4115 3968 2248 109 3 10 chr11 71072932 71073234 -79710319 - AluSx SINE Alu -12 300 1 1084 110 0 14 chr11 71073234 71073379 -79710174 - AluJb SINE Alu -167 145 3 1741 130 98 46 chr11 71073438 71073784 -79709769 + MLT1B LTR MaLR 1 364 -26 543 319 18 13 chr11 71073811 71074040 -79709513 + ERVL LTR ERVL 3412 3641 -2123 796 244 53 31 chr11 71074278 71074503 -79709050 + MIR SINE MIR 12 241 -21 620 319 32 5 chr11 71074594 71074810 -79708743 + ERVL LTR ERVL 5193 5414 -350 974 208 9 33 chr11 71074870 71074905 -79708648 + MER20 DNA MER1_type 7 41 -178 1781 124 92 14 chr11 71074905 71075253 -79708300 + THE1C LTR MaLR 1 375 0 974 208 9 33 chr11 71075253 71075429 -79708124 + MER20 DNA MER1_type 41 213 -6 2077 133 99 8 chr11 71075575 71075967 -79707586 + MSTA LTR MaLR 1 428 0 242 283 115 0 chr11 71076557 71076670 -79706883 + LTR67 LTR ERVL 432 557 0 286 230 158 12 chr11 71076673 71076851 -79706702 + L1M4 LINE L1 5270 5463 -701 2251 128 3 0 chr11 71076952 71077257 -79706296 + AluSx SINE Alu 1 306 -6 1853 121 51 18 chr11 71077519 71077812 -79705741 + AluSq SINE Alu 2 303 0 253 289 126 28 chr11 71078035 71078164 -79705389 + MIR SINE MIR 21 162 -70 557 263 53 32 chr11 71078268 71078351 -79705202 + MIR SINE MIR 64 144 -118 2118 146 0 0 chr11 71078351 71078653 -79704900 + AluJo SINE Alu 1 302 -10 557 263 53 32 chr11 71078653 71078759 -79704794 + MIR SINE MIR 144 257 -5 29 47 0 0 chr11 71079500 71079543 -79704010 + GC_rich Low_complexity Low_complexity 1 43 0 356 287 35 21 chr11 71079888 71080031 -79703522 - MIR3 SINE MIR -29 179 35 205 268 106 41 chr11 71080756 71080879 -79702674 - MIR SINE MIR -61 147 17 470 285 18 42 chr11 71081582 71081747 -79701806 - MIR3 SINE MIR -17 191 31 205 300 0 0 chr11 71082213 71082273 -79701280 + MIR SINE MIR 141 200 -62 207 368 68 8 chr11 71082752 71082869 -79700684 - L3 LINE CR1 -99 1478 1355 604 255 23 54 chr11 71082892 71083142 -79700411 - MIR SINE MIR -10 252 9 192 307 40 10 chr11 71083180 71083281 -79700272 - L3 LINE CR1 -291 1286 1183 572 273 67 72 chr11 71083316 71083705 -79699848 - L2 LINE L2 -59 3213 2827 329 329 75 54 chr11 71084008 71084288 -79699265 + L2 LINE L2 2985 3270 -2 212 269 227 21 chr11 71084297 71084438 -79699115 - L2 LINE L2 -24 3248 3079 316 257 15 12 chr11 71085159 71085257 -79698296 + MIR SINE MIR 19 118 -90 1048 186 0 78 chr11 71085750 71085981 -79697572 - MER58A DNA MER1_type -8 216 4 423 296 38 0 chr11 71085993 71086125 -79697428 + MIR3 SINE MIR 9 145 -63 1336 190 91 8 chr11 71086143 71086396 -79697157 + AluJo SINE Alu 1 274 -38 237 159 0 0 chr11 71087559 71087603 -79695950 + (TG)n Simple_repeat Simple_repeat 1 44 0 249 57 0 0 chr11 71088288 71088323 -79695230 + (CA)n Simple_repeat Simple_repeat 2 36 0 217 217 0 0 chr11 71090035 71090081 -79693472 + GA-rich Low_complexity Low_complexity 1 46 0 34 0 0 0 chr11 71090358 71090392 -79693161 + GC_rich Low_complexity Low_complexity 1 34 0 207 367 0 31 chr11 71095572 71095670 -79687883 + MIR SINE MIR 38 132 -76 317 254 80 51 chr11 71095826 71095964 -79687589 - MIR3 SINE MIR -32 176 35 294 73 0 0 chr11 71097134 71097175 -79686378 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 183 340 43 21 chr11 71097191 71097285 -79686268 - L2 LINE L2 -36 3236 3141 244 303 59 38 chr11 71097535 71097714 -79685839 - MIR SINE MIR -63 145 16 1858 146 15 0 chr11 71097981 71098255 -79685298 + AluJb SINE Alu 1 278 -34 186 343 0 43 chr11 71098302 71098372 -79685181 + MIR SINE MIR 119 185 -77 181 190 52 52 chr11 71098730 71098788 -79684765 + L2 LINE L2 3206 3263 -9 306 73 0 0 chr11 71098793 71098834 -79684719 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 496 136 74 0 chr11 71098844 71098925 -79684628 - AluJb SINE Alu -206 106 20 1111 184 97 22 chr11 71099096 71099125 -79684428 + L1MC3 LINE L1 7459 7484 -301 1846 168 17 0 chr11 71099125 71099416 -79684137 + AluJo SINE Alu 9 304 -8 1111 184 97 22 chr11 71099416 71099664 -79683889 + L1MC3 LINE L1 7484 7757 -28 2477 93 0 0 chr11 71099668 71099980 -79683573 + AluSx SINE Alu 1 312 0 2194 112 0 7 chr11 71099990 71100293 -79683260 - AluSg SINE Alu -9 301 1 239 192 0 0 chr11 71100560 71100612 -79682941 - MIR SINE MIR -71 137 86 499 283 90 33 chr11 71100756 71101056 -79682497 - L2 LINE L2 -1 3312 2996 1920 133 0 83 chr11 71101062 71101399 -79682154 + AluJb SINE Alu 1 309 -3 2155 98 29 23 chr11 71101401 71101824 -79681729 + AluY SINE Alu 3 427 0 935 332 132 8 chr11 71101824 71102345 -79681208 - L2 LINE L2 -337 2977 2392 2032 112 56 0 chr11 71102346 71102632 -79680921 + AluSg SINE Alu 3 304 -6 2318 120 0 0 chr11 71102654 71102963 -79680590 - AluSq SINE Alu -4 309 1 1802 178 3 22 chr11 71103225 71103575 -79679978 + AluJo SINE Alu 3 346 0 1478 143 34 115 chr11 71103585 71103710 -79679843 + AluJo SINE Alu 6 140 -172 2001 162 13 0 chr11 71103710 71104018 -79679535 + AluSq SINE Alu 1 312 -1 1478 143 34 115 chr11 71104018 71104213 -79679340 + AluJo SINE Alu 140 300 -12 2182 114 3 28 chr11 71104213 71104530 -79679023 + AluSg SINE Alu 1 309 -1 2331 90 3 7 chr11 71104552 71104851 -79678702 + AluSx SINE Alu 1 298 -14 2493 72 3 7 chr11 71104896 71105200 -79678353 + AluY SINE Alu 1 303 -8 414 266 36 21 chr11 71105253 71105445 -79678108 + L1ME4a LINE L1 5901 6095 -26 198 182 0 0 chr11 71105446 71105479 -79678074 + L2 LINE L2 3222 3254 -18 246 262 71 36 chr11 71105860 71105944 -79677609 + MIR3 SINE MIR 13 99 -109 232 231 19 0 chr11 71105979 71106031 -79677522 + MIR SINE MIR 88 140 -68 2329 87 0 3 chr11 71107882 71108191 -79675362 + AluSq SINE Alu 1 308 -5 263 319 9 9 chr11 71108745 71108858 -79674695 - MIR SINE MIR -129 133 21 930 94 0 0 chr11 71109558 71109675 -79673878 + AluJo SINE Alu 2 118 -184 365 175 0 0 chr11 71109678 71109741 -79673812 + AluJo SINE Alu 186 248 -54 428 211 204 26 chr11 71109741 71109893 -79673660 + MIR SINE MIR 84 262 0 229 36 0 0 chr11 71109996 71110024 -79673529 + MER84 LTR ERVI 1 28 -479 461 63 203 13 chr11 71110033 71110112 -79673441 + MER84 LTR ERVI 1 94 -413 2136 93 13 3 chr11 71110113 71110424 -79673129 - pTR5 LTR ERV1 -2046 392 79 346 237 44 53 chr11 71110427 71110541 -79673012 - LTR30 LTR ERV1 -73 721 544 4352 146 118 55 chr11 71110543 71111584 -79671969 - pTR5 LTR ERV1 -445 1794 118 1865 131 35 0 chr11 71111584 71111898 -79671655 + MER84 LTR ERVI 89 413 -94 1574 86 0 14 chr11 71111899 71112109 -79671444 + AluSg SINE Alu 1 207 -103 198 0 0 0 chr11 71112137 71112159 -79671394 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 316 330 54 0 chr11 71112170 71112282 -79671271 - BaEV-int LTR ERV1 -5563 1086 969 3701 106 8 6 chr11 71112282 71112792 -79670761 - MER9 LTR ERVK 0 511 1 1145 170 17 17 chr11 71114217 71114479 -79669074 + MER4D LTR ERV1 506 903 0 602 244 20 12 chr11 71114649 71114750 -79668803 + MIR SINE MIR 63 169 -93 2099 115 0 7 chr11 71114750 71115046 -79668507 + AluSc SINE Alu 1 294 -15 602 244 20 12 chr11 71115046 71115117 -79668436 + MIR SINE MIR 169 238 -24 870 149 4 114 chr11 71115188 71115300 -79668253 - MER41B LTR ERV1 -11 597 559 1954 126 18 0 chr11 71115300 71115623 -79667930 - AluSx SINE Alu 0 328 1 870 149 4 114 chr11 71115623 71115772 -79667781 - MER41B LTR ERV1 -49 559 395 2904 70 0 63 chr11 71115775 71116217 -79667336 + MER4B LTR ERV1 1 414 -196 1311 105 16 93 chr11 71116227 71116294 -79667259 + MER4B LTR ERV1 382 453 -157 2178 117 0 0 chr11 71116294 71116593 -79666960 - AluSx SINE Alu -13 299 1 1311 105 16 93 chr11 71116593 71116773 -79666780 + MER4B LTR ERV1 453 610 0 2001 181 5 34 chr11 71116776 71117186 -79666367 - MER41B LTR ERV1 -237 398 1 518 311 94 8 chr11 71117394 71117648 -79665905 - L2 LINE L2 -461 2853 2578 1152 136 0 0 chr11 71117744 71117913 -79665640 - AluSg/x SINE Alu -20 290 122 358 156 0 89 chr11 71117921 71117966 -79665587 - MIR SINE MIR -67 195 160 1795 153 7 3 chr11 71117966 71118261 -79665292 - AluSx SINE Alu -16 296 1 358 156 0 89 chr11 71118261 71118305 -79665248 - MIR SINE MIR -102 160 114 2285 135 43 43 chr11 71118394 71118607 -79664946 - MSTC LTR MaLR -5 423 211 1657 146 108 0 chr11 71118607 71118875 -79664678 - AluSx SINE Alu -15 297 1 2285 135 43 43 chr11 71118875 71119030 -79664523 - MSTC LTR MaLR -217 211 52 4648 140 83 52 chr11 71119030 71119526 -79664027 + MER4D LTR ERV1 1 537 -366 2299 73 3 3 chr11 71119526 71119827 -79663726 + AluY SINE Alu 3 303 -8 4648 140 83 52 chr11 71119827 71120206 -79663347 + MER4D LTR ERV1 537 903 0 2285 135 43 43 chr11 71120206 71120259 -79663294 - MSTC LTR MaLR -375 53 1 2621 118 24 73 chr11 71120282 71120396 -79663157 - MSTA LTR MaLR 0 428 310 2205 115 3 0 chr11 71120396 71120708 -79662845 + AluSp SINE Alu 1 313 0 2621 118 24 73 chr11 71120708 71121043 -79662510 - MSTA LTR MaLR -118 310 1 937 271 81 11 chr11 71121084 71121564 -79661989 - L2 LINE L2 -243 3070 2553 258 402 0 0 chr11 71121588 71121685 -79661868 - L2 LINE L2 -3 3269 3173 554 291 90 29 chr11 71121703 71121853 -79661700 + MER112 DNA MER1_type 1 173 -87 588 29 0 0 chr11 71121853 71121923 -79661630 + (CTATT)n Simple_repeat Simple_repeat 4 73 0 554 291 90 29 chr11 71121923 71122016 -79661537 + MER112 DNA MER1_type 173 259 -1 2224 156 7 42 chr11 71122120 71122524 -79661029 - MLT1B LTR MaLR 0 390 1 236 320 57 16 chr11 71122905 71123027 -79660526 - L2 LINE L2 -622 2692 2566 * 416 237 13 165 chr11 71123019 71123153 -79660400 - MIR SINE MIR 0 262 109 1873 139 11 3 chr11 71123153 71123440 -79660113 - AluJb SINE Alu -23 289 1 1943 86 71 0 chr11 71123446 71123738 -79659815 - AluSc SINE Alu 0 311 1 369 0 0 0 chr11 71123738 71123779 -79659774 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2186 88 0 3 chr11 71123779 71124062 -79659491 - AluSg SINE Alu -28 282 1 416 237 13 165 chr11 71124062 71124140 -79659413 - MIR SINE MIR -155 107 73 3309 246 75 53 chr11 71125166 71125746 -79657807 - L1M4b LINE L1 -5542 1317 703 1848 130 33 13 chr11 71125746 71126046 -79657507 - AluSx SINE Alu -6 306 1 3309 246 75 53 chr11 71126046 71126471 -79657082 - L1M4b LINE L1 -6156 703 289 1387 138 9 5 chr11 71126472 71126690 -79656863 - AluJb SINE Alu -9 303 85 2173 80 0 23 chr11 71126860 71127161 -79656392 + AluY SINE Alu 1 294 -17 689 109 0 10 chr11 71127170 71127429 -79656124 + AluSx SINE Alu 1 310 0 1278 203 112 8 chr11 71127466 71127739 -79655814 + LTR43 LTR ERV1 176 498 -104 2055 120 0 7 chr11 71127739 71128056 -79655497 - AluSg SINE Alu 0 310 1 1278 203 112 8 chr11 71128056 71128147 -79655406 + LTR43 LTR ERV1 498 578 -24 450 218 40 0 chr11 71128168 71128269 -79655284 + MLT1F LTR MaLR 39 143 -447 1433 163 35 42 chr11 71128277 71128458 -79655095 - AluJo SINE Alu -18 294 114 2666 118 46 22 chr11 71128458 71128496 -79655057 - MSTA LTR MaLR -4 424 388 2147 110 3 3 chr11 71128496 71128797 -79654756 + AluSx SINE Alu 1 301 -11 2666 118 46 22 chr11 71128797 71129172 -79654381 - MSTA LTR MaLR -40 388 1 1433 163 35 42 chr11 71129172 71129278 -79654275 - AluJo SINE Alu -198 114 9 1167 218 27 23 chr11 71129285 71129547 -79654006 + MLT1F LTR MaLR 160 422 -120 972 97 103 0 chr11 71129807 71129972 -79653581 + LTR47A LTR ERVL 261 442 -10 472 252 9 0 chr11 71129975 71130086 -79653467 + MLT1F LTR MaLR 448 559 -8 24 77 0 0 chr11 71130276 71130328 -79653225 + AT_rich Low_complexity Low_complexity 1 52 0 702 109 8 17 chr11 71130490 71130609 -79652944 + L1MB4 LINE L1 6063 6180 0 239 346 46 0 chr11 71130622 71130752 -79652801 + L1P LINE L1 4032 4167 -1979 2160 123 0 0 chr11 71133344 71133654 -79649899 - AluSx SINE Alu -2 310 1 1140 199 38 123 chr11 71133659 71134056 -79649497 - MLT1E LTR MaLR -214 379 17 258 282 22 0 chr11 71134085 71134193 -79649360 + MLT1F-int LTR MaLR 272 384 -987 1105 206 55 41 chr11 71134205 71134496 -79649057 + AluJo SINE Alu 11 305 -7 827 134 19 19 chr11 71134514 71134732 -79648821 + G-rich Low_complexity Low_complexity 1 218 0 621 269 0 36 chr11 71134750 71134943 -79648610 + MLT1F-int LTR MaLR 402 587 -784 1952 141 7 0 chr11 71134944 71135264 -79648289 + AluSq SINE Alu 1 313 0 351 319 89 0 chr11 71135460 71135629 -79647924 + MLT1F-int LTR MaLR 701 884 -487 1809 159 33 0 chr11 71135982 71136283 -79647270 - AluJo SINE Alu -1 311 1 2440 60 3 0 chr11 71136397 71136697 -79646856 + AluY SINE Alu 1 301 -10 4779 36 0 2 chr11 71136699 71137259 -79646294 + L1PA4 LINE L1 5594 6152 -3 395 290 7 41 chr11 71137393 71137538 -79646015 - MIR SINE MIR -102 160 21 353 247 11 0 chr11 71137753 71137846 -79645707 + MIR SINE MIR 62 155 -107 251 336 19 19 chr11 71137848 71137955 -79645598 - L2 LINE L2 -8 3264 3158 262 253 103 11 chr11 71138638 71138725 -79644828 + MIR SINE MIR 95 189 -73 233 252 26 26 chr11 71139539 71139709 -79643844 + (CGGGG)n Simple_repeat Simple_repeat 1 170 0 717 259 132 5 chr11 71141372 71141584 -79641969 + MIR SINE MIR 4 242 -20 716 213 133 22 chr11 71141564 71141789 -79641764 - MIR SINE MIR -8 254 5 * 185 274 0 0 chr11 71141794 71141845 -79641708 - MIR SINE MIR -61 147 97 475 270 5 37 chr11 71142078 71142285 -79641268 - MIR SINE MIR 0 262 17 325 271 10 66 chr11 71142493 71142604 -79640949 + MER5A DNA MER1_type 10 125 -64 2298 107 0 0 chr11 71142604 71142912 -79640641 - AluSx SINE Alu -4 308 1 325 271 10 66 chr11 71142912 71142953 -79640600 + MER5A DNA MER1_type 125 167 -22 402 261 70 9 chr11 71143177 71143292 -79640261 + MIR SINE MIR 28 149 -113 274 331 79 58 chr11 71143559 71143837 -79639716 + L2 LINE L2 2988 3271 -1 389 305 50 45 chr11 71144527 71144676 -79638877 + MIR SINE MIR 1 153 -109 2161 93 0 45 chr11 71144676 71144986 -79638567 - AluSx SINE Alu -16 296 1 389 305 50 45 chr11 71144986 71145036 -79638517 + MIR SINE MIR 153 201 -61 197 291 39 39 chr11 71145386 71145489 -79638064 - MIR SINE MIR -68 140 38 791 239 54 11 chr11 71145533 71145717 -79637836 + MIR SINE MIR 45 236 -26 186 219 178 0 chr11 71146366 71146439 -79637114 - MIR SINE MIR -110 152 67 702 236 66 74 chr11 71147468 71147530 -79636023 - MIR SINE MIR -6 256 195 2103 95 0 3 chr11 71147530 71147842 -79635711 - AluSx SINE Alu 0 311 1 702 236 66 74 chr11 71147842 71148020 -79635533 - MIR SINE MIR -67 195 17 188 244 0 0 chr11 71148174 71148215 -79635338 - MIR3 SINE MIR -53 155 115 469 319 53 69 chr11 71149503 71149954 -79633599 - L2 LINE L2 -16 3256 2813 459 267 194 6 chr11 71150111 71150291 -79633262 - MIR SINE MIR 0 262 49 238 222 79 0 chr11 71151446 71151509 -79632044 + MIR SINE MIR 117 184 -78 372 318 93 0 chr11 71151676 71151827 -79631726 + MIR SINE MIR 79 243 -19 225 217 0 58 chr11 71151980 71152049 -79631504 - MIR SINE MIR -113 149 85 289 234 16 0 chr11 71153584 71153648 -79629905 + MIR SINE MIR 80 144 -118 250 310 58 0 chr11 71153805 71153892 -79629661 - MIR SINE MIR -71 191 100 2085 116 0 3 chr11 71154010 71154303 -79629250 + AluSx SINE Alu 1 292 -20 378 263 95 36 chr11 71154316 71154453 -79629100 + MIR3 SINE MIR 16 160 -48 2136 119 0 0 chr11 71154456 71154751 -79628802 - AluSx SINE Alu -17 295 1 416 236 8 27 chr11 71154796 71154927 -79628626 + MIR SINE MIR 71 198 -63 236 215 0 17 chr11 71155393 71155477 -79628076 + MIR SINE MIR 98 142 -66 278 348 18 18 chr11 71155564 71155676 -79627877 + MIR SINE MIR 16 127 -81 655 251 111 107 chr11 71155691 71155817 -79627736 - L1MC4a LINE L1 -18 6103 5979 1995 150 0 3 chr11 71155817 71156130 -79627423 - AluSx SINE Alu 0 312 1 655 251 111 107 chr11 71156130 71156600 -79626953 - L1MC4a LINE L1 -142 5979 5505 2205 97 0 3 chr11 71156781 71157080 -79626473 - AluSc SINE Alu -11 298 1 586 258 45 28 chr11 71157088 71157266 -79626287 - MLT1K LTR MaLR -11 577 397 383 233 173 27 chr11 71157323 71157473 -79626080 - MLT1K LTR MaLR -303 285 114 196 339 40 32 chr11 71158129 71158253 -79625300 + MIR SINE MIR 16 140 -68 292 255 20 59 chr11 71158518 71158558 -79624995 - MER5A DNA MER1_type -83 106 66 1652 164 3 24 chr11 71158558 71158717 -79624836 - AluJo SINE Alu -20 292 131 312 27 0 0 chr11 71158717 71158754 -79624799 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 1568 180 14 18 chr11 71158754 71159037 -79624516 - AluJo SINE Alu -30 282 1 1652 164 3 24 chr11 71159037 71159168 -79624385 - AluJo SINE Alu -179 133 7 292 255 20 59 chr11 71159168 71159229 -79624324 - MER5A DNA MER1_type -123 66 9 345 223 108 40 chr11 71159567 71159692 -79623861 + MIR3 SINE MIR 63 195 -13 213 159 0 72 chr11 71159711 71159780 -79623773 + GA-rich Low_complexity Low_complexity 3 66 0 566 291 22 94 chr11 71160858 71161073 -79622480 - MLT1K LTR MaLR -258 330 144 2229 114 0 0 chr11 71161073 71161380 -79622173 + AluSx SINE Alu 1 307 -5 566 291 22 94 chr11 71161380 71161484 -79622069 - MLT1K LTR MaLR -444 144 34 1884 114 6 51 chr11 71161642 71161958 -79621595 - AluSx SINE Alu -10 302 1 240 284 40 0 chr11 71162146 71162220 -79621333 + L2 LINE L2 3186 3262 -51 803 249 224 32 chr11 71162386 71162825 -79620728 - MLT1G1 LTR MaLR -10 585 43 751 180 23 0 chr11 71162825 71162953 -79620600 + FLAM_A SINE Alu 1 131 -2 803 249 224 32 chr11 71162953 71162988 -79620565 - MLT1G1 LTR MaLR -552 43 16 903 165 269 7 chr11 71163058 71163337 -79620216 - MLT1D LTR MaLR 0 505 154 458 213 169 7 chr11 71163351 71163487 -79620066 + MIR SINE MIR 53 210 -52 2007 116 3 13 chr11 71163506 71163848 -79619705 - AluSx SINE Alu 0 312 1 343 267 112 17 chr11 71164674 71164790 -79618763 - MIR SINE MIR -23 239 113 238 232 74 42 chr11 71164849 71164944 -79618609 + MIR SINE MIR 15 112 -150 216 250 14 42 chr11 71165359 71165431 -79618122 + L2 LINE L2 3198 3267 -5 288 270 119 19 chr11 71166014 71166184 -79617369 + MIR SINE MIR 15 194 -59 344 253 139 38 chr11 71167239 71167397 -79616156 + MIR SINE MIR 82 255 -7 396 225 27 27 chr11 71167455 71167566 -79615987 + MIR SINE MIR 111 221 -41 192 347 53 0 chr11 71167699 71167794 -79615759 + MIR3 SINE MIR 88 187 -21 247 194 175 19 chr11 71168616 71168719 -79614834 + MIR3 SINE MIR 38 156 -52 621 212 212 0 chr11 71168786 71168956 -79614597 - MIR SINE MIR -28 234 29 1222 82 29 0 chr11 71169012 71169183 -79614370 - AluSc SINE Alu -2 307 132 2309 93 0 0 chr11 71169183 71169484 -79614069 - AluY SINE Alu -6 305 5 506 215 32 0 chr11 71169548 71169678 -79613875 + MIR SINE MIR 32 164 -62 2032 133 0 0 chr11 71170392 71170685 -79612868 + AluJb SINE Alu 11 303 -9 2119 81 11 14 chr11 71170693 71170873 -79612680 - AluSq SINE Alu 0 316 136 2351 61 0 0 chr11 71170873 71171166 -79612387 - AluY SINE Alu -18 293 1 2119 81 11 14 chr11 71171166 71171302 -79612251 - AluSq SINE Alu -180 136 1 1636 176 38 0 chr11 71171515 71171805 -79611748 + AluJb SINE Alu 3 303 -9 2149 85 7 7 chr11 71171855 71172148 -79611405 + AluSq SINE Alu 2 294 -19 1407 167 104 44 chr11 71172187 71172261 -79611292 + MER44D DNA MER2_type 4 72 -2419 2109 124 0 0 chr11 71172261 71172560 -79610993 + AluSx SINE Alu 1 299 -13 1407 167 104 44 chr11 71172560 71172802 -79610751 + MER44D DNA MER2_type 72 609 0 431 290 164 35 chr11 71172819 71172845 -79610708 + L1ME3A LINE L1 5258 5279 -891 1918 148 3 3 chr11 71172845 71173148 -79610405 + AluSx SINE Alu 1 303 -9 431 290 164 35 chr11 71173148 71173547 -79610006 + L1ME3A LINE L1 5279 5625 -545 1955 122 3 10 chr11 71173547 71173680 -79609873 + AluSq SINE Alu 1 133 -180 2185 109 7 0 chr11 71173680 71173984 -79609569 + AluSx SINE Alu 1 306 -6 1955 122 3 10 chr11 71173984 71174146 -79609407 + AluSq SINE Alu 133 294 -19 431 290 164 35 chr11 71174146 71174316 -79609237 + L1ME3A LINE L1 5625 5772 -398 1971 124 3 3 chr11 71174316 71174614 -79608939 + AluSx SINE Alu 1 298 -14 431 290 164 35 chr11 71174614 71174636 -79608917 + L1ME3A LINE L1 5772 5957 -213 2060 94 21 3 chr11 71174689 71174975 -79608578 + AluSc SINE Alu 1 291 -18 1967 110 7 17 chr11 71175085 71175249 -79608304 - AluSg SINE Alu -14 296 135 2184 66 28 10 chr11 71175249 71175538 -79608015 - AluY SINE Alu -17 294 1 1967 110 7 17 chr11 71175538 71175672 -79607881 - AluSg SINE Alu -175 135 1 2057 133 7 0 chr11 71175733 71176041 -79607512 - AluSx SINE Alu -2 310 1 445 225 181 12 chr11 71176129 71176289 -79607264 - MIR SINE MIR -13 249 63 671 187 0 107 chr11 71176304 71176379 -79607174 - MLT1A1 LTR MaLR 0 365 284 2092 95 7 10 chr11 71176379 71176673 -79606880 + AluSc SINE Alu 1 293 -16 671 187 0 107 chr11 71176673 71176784 -79606769 - MLT1A1 LTR MaLR -81 284 199 327 113 0 81 chr11 71176901 71176963 -79606590 - FLAM_A SINE Alu 0 133 77 879 221 30 5 chr11 71176963 71177162 -79606391 - AluJo SINE Alu -108 204 1 265 125 0 0 chr11 71177162 71177202 -79606351 - MSTC LTR MaLR -209 156 117 301 42 42 42 chr11 71177236 71177284 -79606269 - MSTC LTR MaLR -380 48 1 224 275 58 14 chr11 71178193 71178262 -79605291 + MIR3 SINE MIR 85 156 -52 681 247 43 0 chr11 71178303 71178465 -79605088 - MIR SINE MIR -46 216 48 638 184 80 16 chr11 71178474 71178599 -79604954 + FLAM_A SINE Alu 1 133 0 2268 96 3 10 chr11 71178710 71179024 -79604529 - AluSx SINE Alu 0 312 1 2332 80 0 0 chr11 71179025 71179327 -79604226 - AluSq SINE Alu -11 302 1 452 345 64 11 chr11 71179415 71179696 -79603857 + L2 LINE L2 2844 3139 -174 2342 82 0 0 chr11 71179957 71180260 -79603293 + AluY SINE Alu 1 303 -8 1954 114 35 0 chr11 71180460 71180749 -79602804 - AluSx SINE Alu -13 299 1 533 254 185 0 chr11 71180758 71180931 -79602622 - MIR SINE MIR -49 213 9 271 207 17 0 chr11 71181142 71181200 -79602353 - MIR SINE MIR -123 139 81 203 222 89 0 chr11 71181219 71181264 -79602289 + L2 LINE L2 3150 3198 -74 1882 124 7 7 chr11 71181288 71181597 -79601956 - AluSx SINE Alu 0 309 1 208 287 0 64 chr11 71181657 71181751 -79601802 + MIR SINE MIR 150 237 -25 203 361 63 38 chr11 71182196 71182354 -79601199 - MIR SINE MIR -48 214 53 2244 83 10 0 chr11 71182660 71182960 -79600593 + AluSg SINE Alu 1 303 -7 266 313 10 10 chr11 71183591 71183687 -79599866 - MIR SINE MIR -72 136 41 436 205 9 27 chr11 71184370 71184482 -79599071 + L1MC5 LINE L1 7817 7926 -35 27 19 0 57 chr11 71184487 71184507 -79599046 + AT_rich Low_complexity Low_complexity 1 21 -29 1791 127 11 0 chr11 71184507 71184774 -79598779 + AluSx SINE Alu 21 290 -22 483 100 0 0 chr11 71184774 71184844 -79598709 + (TA)n Simple_repeat Simple_repeat 2 71 0 27 19 0 57 chr11 71184844 71184875 -79598678 + AT_rich Low_complexity Low_complexity 19 50 0 239 224 0 0 chr11 71185235 71185284 -79598269 - L2 LINE L2 0 3313 3265 2206 87 0 10 chr11 71185449 71185747 -79597806 + AluSg SINE Alu 1 295 -15 334 280 11 32 chr11 71185779 71185872 -79597681 + L2 LINE L2 3223 3313 0 263 333 19 58 chr11 71185940 71186096 -79597457 - L2 LINE L2 -232 3040 2891 609 205 139 0 chr11 71186139 71186290 -79597263 + MIR SINE MIR 6 177 -85 963 173 0 12 chr11 71186292 71186454 -79597099 + FRAM SINE Alu 1 159 -17 196 361 28 0 chr11 71186455 71186527 -79597026 + MIR SINE MIR 173 246 -16 359 267 112 43 chr11 71186871 71187058 -79596495 - MIR SINE MIR 0 262 63 2001 131 0 7 chr11 71187579 71187877 -79595676 - AluSq SINE Alu -17 296 1 2224 104 7 0 chr11 71188882 71189181 -79594372 - AluSx SINE Alu -6 306 6 1649 174 0 21 chr11 71189335 71189617 -79593936 - AluJo SINE Alu -36 276 1 2455 67 0 6 chr11 71189678 71189990 -79593563 + AluY SINE Alu 1 310 -1 183 80 0 0 chr11 71190368 71190393 -79593160 + (C)n Simple_repeat Simple_repeat 1 25 0 541 142 22 30 chr11 71190420 71190448 -79593105 + GA-rich Low_complexity Low_complexity 2 29 -105 2033 98 29 23 chr11 71190448 71190754 -79592799 + AluY SINE Alu 3 310 -1 541 142 22 30 chr11 71190754 71190859 -79592694 + GA-rich Low_complexity Low_complexity 29 134 0 940 331 130 11 chr11 71190859 71191381 -79592172 - L2 LINE L2 -337 2977 2390 1965 114 48 0 chr11 71191381 71191671 -79591882 + AluSg SINE Alu 3 306 -4 2161 123 0 0 chr11 71191691 71192000 -79591553 - AluSq SINE Alu -4 309 1 1692 180 3 22 chr11 71192262 71192612 -79590941 + AluJo SINE Alu 3 346 0 1363 143 34 115 chr11 71192622 71192747 -79590806 + AluJo SINE Alu 6 140 -172 1907 159 13 0 chr11 71192747 71193055 -79590498 + AluSq SINE Alu 1 312 -1 1363 143 34 115 chr11 71193055 71193250 -79590303 + AluJo SINE Alu 140 300 -12 2046 114 3 28 chr11 71193250 71193567 -79589986 + AluSg SINE Alu 1 309 -1 427 143 8 25 chr11 71193589 71193851 -79589702 + AluSx SINE Alu 1 309 0 1278 203 112 8 chr11 71193888 71194161 -79589392 + LTR43 LTR ERV1 176 498 -104 2055 120 0 7 chr11 71194161 71194478 -79589075 - AluSg SINE Alu 0 310 1 1278 203 112 8 chr11 71194478 71194569 -79588984 + LTR43 LTR ERV1 498 578 -24 450 218 40 0 chr11 71194590 71194691 -79588862 + MLT1F LTR MaLR 39 143 -447 1391 170 35 42 chr11 71194699 71194880 -79588673 - AluJo SINE Alu -18 294 114 2635 121 46 22 chr11 71194880 71194918 -79588635 - MSTA LTR MaLR -4 424 388 2027 119 3 7 chr11 71194918 71195220 -79588333 + AluSx SINE Alu 1 301 -11 2635 121 46 22 chr11 71195220 71195595 -79587958 - MSTA LTR MaLR -40 388 1 1391 170 35 42 chr11 71195595 71195701 -79587852 - AluJo SINE Alu -198 114 9 1167 218 27 23 chr11 71195708 71195970 -79587583 + MLT1F LTR MaLR 160 422 -120 972 97 103 0 chr11 71196230 71196395 -79587158 + LTR47A LTR ERVL 261 442 -10 456 244 43 0 chr11 71196398 71196513 -79587040 + MLT1F LTR MaLR 448 567 0 1711 161 0 14 chr11 71196524 71196803 -79586750 + AluJo SINE Alu 1 275 -37 1875 159 7 3 chr11 71198675 71198977 -79584576 - AluJb SINE Alu -9 303 1 2651 13 3 0 chr11 71199966 71200268 -79583285 + AluYa5 SINE Alu 1 303 -8 1930 140 31 0 chr11 71200278 71200564 -79582989 + AluJb SINE Alu 1 295 -17 796 223 134 3 chr11 71200632 71200915 -79582638 + MER33 DNA MER1_type 5 324 0 686 268 78 78 chr11 71200919 71200965 -79582588 + L1M4 LINE L1 4993 5038 -1108 2132 81 10 29 chr11 71200965 71201272 -79582281 + AluSq SINE Alu 1 301 -12 686 268 78 78 chr11 71201272 71201358 -79582195 + L1M4 LINE L1 5038 5123 -1023 1818 134 38 10 chr11 71201358 71201648 -79581905 + AluJb SINE Alu 1 298 -14 686 268 78 78 chr11 71201648 71201887 -79581666 + L1M4 LINE L1 5122 5365 -781 1387 160 75 85 chr11 71201901 71202195 -79581358 + AluJo SINE Alu 1 291 -11 561 138 21 11 chr11 71202197 71202291 -79581262 + AluS SINE Alu 3 97 -215 348 312 122 11 chr11 71203018 71203207 -79580346 - L2 LINE L2 0 3313 3104 2019 105 16 20 chr11 71203242 71203548 -79580005 + AluSx SINE Alu 1 305 -7 537 186 64 0 chr11 71203555 71203695 -79579858 + L1MA7 LINE L1 6139 6287 -4 582 189 0 0 chr11 71203762 71203852 -79579701 + FAM SINE Alu 74 163 -22 30 0 0 0 chr11 71203852 71203882 -79579671 + AT_rich Low_complexity Low_complexity 1 30 0 1085 228 153 14 chr11 71203884 71204352 -79579201 - L2 LINE L2 -247 3066 2535 211 326 81 0 chr11 71204414 71204500 -79579053 - MIR3 SINE MIR -17 191 99 2344 80 0 3 chr11 71207154 71207454 -79576099 - AluSp SINE Alu -14 299 1 1493 158 26 11 chr11 71207458 71207730 -79575823 - L1MB7 LINE L1 -47 6137 5862 2144 85 32 0 chr11 71207843 71208126 -79575427 - AluSg SINE Alu -18 292 1 2090 99 0 32 chr11 71208126 71208438 -79575115 - AluSx SINE Alu -10 302 1 191 287 245 0 chr11 71208458 71208552 -79575001 + L2 LINE L2 3155 3271 -1 324 361 98 0 chr11 71209860 71209993 -79573560 + HAL1 LINE L1 1 146 -2361 1359 118 74 63 chr11 71210016 71210145 -79573408 - AluSq SINE Alu -39 274 148 2310 73 7 3 chr11 71210145 71210447 -79573106 - AluSq SINE Alu -10 303 1 1359 118 74 63 chr11 71210447 71210588 -79572965 - AluSq SINE Alu -165 148 1 2166 82 4 0 chr11 71210592 71210926 -79572627 - AluY SINE Alu 0 335 1 711 77 0 0 chr11 71210927 71211018 -79572535 - AluY SINE Alu -219 92 2 376 347 61 47 chr11 71211094 71211437 -79572116 + HAL1 LINE L1 235 582 -1925 2282 95 3 9 chr11 71211668 71211983 -79571570 - AluSp SINE Alu 0 313 1 1893 123 51 0 chr11 71212003 71212296 -79571257 - AluSx SINE Alu -2 310 3 530 246 62 6 chr11 71212497 71212676 -79570877 - L1ME3A LINE L1 -219 5951 5763 550 300 78 8 chr11 71212743 71212986 -79570567 - L1ME3A LINE L1 -1479 4667 4408 316 156 63 21 chr11 71212988 71213082 -79570471 + AluJo SINE Alu 87 142 -160 1336 175 21 7 chr11 71213090 71213370 -79570183 + AluJb SINE Alu 23 306 -6 1861 118 0 0 chr11 71213380 71213635 -79569918 + AluSx SINE Alu 1 255 -57 1774 84 0 24 chr11 71213636 71213877 -79569676 + AluY SINE Alu 58 294 -17 198 0 0 0 chr11 71213877 71213899 -79569654 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 775 189 0 8 chr11 71213929 71214061 -79569492 - FLAM_C SINE Alu -2 131 1 2190 88 16 10 chr11 71214107 71214413 -79569140 - AluSq SINE Alu -5 308 1 2186 76 0 0 chr11 71214413 71214689 -79568864 - AluSq SINE Alu -37 276 1 455 228 44 0 chr11 71214701 71214815 -79568738 + HAL1 LINE L1 1681 1799 -708 434 218 62 28 chr11 71214894 71215073 -79568480 + HAL1 LINE L1 1987 2171 -336 399 256 168 20 chr11 71215081 71215284 -79568269 + HAL1 LINE L1 2222 2454 -53 271 207 17 0 chr11 71219244 71219302 -79564251 - MIR SINE MIR -123 139 81 203 222 89 0 chr11 71219321 71219366 -79564187 + L2 LINE L2 3150 3198 -74 1882 124 7 7 chr11 71219390 71219699 -79563854 - AluSx SINE Alu 0 309 1 208 287 0 64 chr11 71219759 71219853 -79563700 + MIR SINE MIR 150 237 -25 217 354 63 38 chr11 71220299 71220457 -79563096 - MIR SINE MIR -48 214 53 1743 146 10 3 chr11 71220763 71221057 -79562496 + AluSg SINE Alu 1 296 -14 2095 95 21 0 chr11 71221167 71221452 -79562101 - AluSc SINE Alu -18 291 1 426 248 176 62 chr11 71221486 71221527 -79562026 - L1ME3A LINE L1 -198 5972 5937 1947 128 3 3 chr11 71221527 71221824 -79561729 - AluSx SINE Alu -15 297 1 426 248 176 62 chr11 71221824 71221992 -79561561 - L1ME3A LINE L1 -233 5937 5739 1013 130 6 12 chr11 71221994 71222156 -79561397 - AluSq SINE Alu -19 294 134 1377 164 10 32 chr11 71222157 71222467 -79561086 - AluSg SINE Alu -7 303 1 2186 76 0 0 chr11 71222467 71222743 -79560810 - AluSq SINE Alu -37 276 1 455 228 44 0 chr11 71222755 71222869 -79560684 + HAL1 LINE L1 1681 1799 -708 434 218 62 28 chr11 71222948 71223127 -79560426 + HAL1 LINE L1 1987 2171 -336 407 233 17 25 chr11 71223135 71223255 -79560298 + HAL1 LINE L1 2222 2340 -167 1992 123 3 3 chr11 71229489 71229789 -79553764 - AluSp SINE Alu -13 300 1 312 377 83 25 chr11 71229791 71230067 -79553486 - L1M4 LINE L1 -1183 4963 4672 1898 106 53 3 chr11 71230246 71230528 -79553025 - AluSx SINE Alu -16 296 1 232 303 103 36 chr11 71230530 71230695 -79552858 + L2 LINE L2 2917 3092 -180 2345 97 0 0 chr11 71230778 71231088 -79552465 - AluSg SINE Alu 0 310 1 242 116 23 0 chr11 71231149 71231192 -79552361 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 750 172 39 0 chr11 71231254 71231382 -79552171 - FLAM_C SINE Alu 0 133 1 284 316 21 0 chr11 71232004 71232099 -79551454 - L2 LINE L2 0 3272 3176 201 349 80 42 chr11 71232477 71232789 -79550764 + L2 LINE L2 2522 2845 -469 1021 153 18 6 chr11 71232904 71233074 -79550479 - AluSg/x SINE Alu -21 291 120 1879 117 32 29 chr11 71233088 71233262 -79550291 - AluSg SINE Alu 0 310 133 2473 54 0 0 chr11 71233262 71233558 -79549995 - AluY SINE Alu -15 296 1 1879 117 32 29 chr11 71233558 71233692 -79549861 - AluSg SINE Alu -177 133 1 266 218 246 27 chr11 71233695 71233805 -79549748 + MER112 DNA MER1_type 126 259 -1 344 332 116 44 chr11 71233851 71234183 -79549370 + L2 LINE L2 2927 3288 -25 2110 125 0 0 chr11 71234183 71234479 -79549074 - AluSx SINE Alu -16 296 1 344 332 116 44 chr11 71234479 71234507 -79549046 + L2 LINE L2 3288 3313 0 196 304 25 25 chr11 71235116 71235195 -79548358 + MIR SINE MIR 20 98 -164 466 295 217 10 chr11 71235526 71235821 -79547732 + L2 LINE L2 2957 3312 -1 2237 96 0 0 chr11 71235831 71236124 -79547429 + AluSg SINE Alu 1 293 -17 1169 143 111 0 chr11 71236154 71236398 -79547155 - L1MB8 LINE L1 -212 5966 5696 264 314 76 0 chr11 71236485 71236590 -79546963 - MIR SINE MIR -81 181 69 501 282 56 42 chr11 71237254 71237433 -79546120 - MIR SINE MIR -36 226 42 1867 127 3 54 chr11 71237433 71237747 -79545806 + AluSx SINE Alu 1 298 -14 501 282 56 42 chr11 71237747 71237783 -79545770 - MIR SINE MIR -220 42 8 201 400 17 17 chr11 71237845 71237965 -79545588 + L2 LINE L2 3104 3223 -49 252 0 0 0 chr11 71237980 71238008 -79545545 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 218 237 206 0 chr11 71238288 71238385 -79545168 - L2 LINE L2 -15 3257 3141 266 253 0 11 chr11 71238600 71238687 -79544866 + MER113 DNA MER1_type? 6 91 -430 2158 116 3 0 chr11 71238689 71238990 -79544563 - AluSq SINE Alu -11 302 1 1426 201 22 32 chr11 71239130 71239154 -79544399 - AluJo SINE Alu -1 311 288 222 37 0 0 chr11 71239154 71239181 -79544372 + (TCCCC)n Simple_repeat Simple_repeat 5 31 0 1426 201 22 32 chr11 71239181 71239470 -79544083 - AluJo SINE Alu -24 288 1 957 128 0 0 chr11 71239499 71239632 -79543921 - AluSq/x SINE Alu -180 133 1 1389 210 188 6 chr11 71239738 71240174 -79543379 - MLT1F1 LTR MaLR -3 564 54 224 263 44 94 chr11 71240562 71240722 -79542831 + L2 LINE L2 2625 2776 -538 2102 133 0 13 chr11 71240892 71241027 -79542526 + AluSx SINE Alu 2 137 -165 1935 127 3 33 chr11 71241027 71241163 -79542390 + AluSx SINE Alu 1 139 -173 2336 57 0 0 chr11 71241163 71241476 -79542077 + AluY SINE Alu 1 313 0 1935 127 3 33 chr11 71241476 71241679 -79541874 + AluSx SINE Alu 139 312 0 2102 133 0 13 chr11 71241679 71241845 -79541708 + AluSx SINE Alu 137 299 -3 1923 155 0 13 chr11 71244181 71244497 -79539056 + AluJb SINE Alu 1 312 0 623 125 0 0 chr11 71245250 71245338 -79538215 - AluJ/FRAM SINE Alu -5 307 220 1949 129 0 17 chr11 71245341 71245635 -79537918 + AluSx SINE Alu 5 293 -19 1821 86 0 4 chr11 71245642 71245885 -79537668 + AluY SINE Alu 1 242 -69 2232 78 10 0 chr11 71245995 71246291 -79537262 - AluY SINE Alu -11 300 2 2424 69 3 0 chr11 71246301 71246605 -79536948 - AluSx SINE Alu -7 305 1 828 281 28 47 chr11 71247075 71247208 -79536345 + L1ME4a LINE L1 5543 5677 -444 1424 199 60 0 chr11 71247208 71247489 -79536064 + AluSx SINE Alu 1 298 -14 828 281 28 47 chr11 71247489 71247642 -79535911 + L1ME4a LINE L1 5677 5823 -298 1984 157 0 0 chr11 71247642 71247954 -79535599 + AluSx SINE Alu 1 312 0 828 281 28 47 chr11 71247954 71248025 -79535528 + L1ME4a LINE L1 5823 5894 -227 1057 184 20 0 chr11 71248037 71248233 -79535320 - AluJo SINE Alu 0 312 113 419 333 58 0 chr11 71248240 71248396 -79535157 + L1ME4a LINE L1 5934 6098 -23 321 186 180 60 chr11 71248713 71248840 -79534713 + L1ME LINE L1 5654 5807 -314 1905 113 42 0 chr11 71248840 71249123 -79534430 - AluSg SINE Alu -15 295 1 321 186 180 60 chr11 71249123 71249162 -79534391 + L1ME LINE L1 5807 5840 -281 1808 161 0 16 chr11 71249163 71249473 -79534080 + AluJo SINE Alu 1 305 -7 1965 125 44 3 chr11 71249474 71249771 -79533782 + AluSg SINE Alu 1 309 -1 1254 141 5 5 chr11 71249771 71249969 -79533584 + AluSg/x SINE Alu 102 299 -11 2408 77 3 0 chr11 71249969 71250279 -79533274 + AluSp SINE Alu 1 311 -2 853 121 0 0 chr11 71250331 71250455 -79533098 + AluJb SINE Alu 11 134 -178 2267 86 0 7 chr11 71250464 71250767 -79532786 + AluSc SINE Alu 5 305 -4 189 0 0 0 chr11 71250900 71250921 -79532632 + (A)n Simple_repeat Simple_repeat 1 21 0 301 300 177 8 chr11 71250977 71251107 -79532446 - L3 LINE CR1 -3 1574 1423 413 279 42 48 chr11 71251275 71251440 -79532113 - MIR3 SINE MIR -8 200 37 788 140 0 0 chr11 71251640 71251747 -79531806 + AluJo/FLAM SINE Alu 3 109 -203 539 136 0 23 chr11 71251742 71251830 -79531723 + FLAM SINE Alu 44 129 -14 * 406 187 27 0 chr11 71251965 71252040 -79531513 - MER46C DNA MER2_type -7 331 255 293 212 12 59 chr11 71252218 71252303 -79531250 - MIR SINE MIR -79 129 49 226 271 35 50 chr11 71252874 71252959 -79530594 + MIR SINE MIR 106 191 -71 2007 137 0 7 chr11 71252959 71253259 -79530294 + AluSx SINE Alu 1 298 -14 2021 116 27 0 chr11 71253263 71253556 -79529997 + AluSg SINE Alu 1 301 -9 226 271 35 50 chr11 71253556 71253612 -79529941 + MIR SINE MIR 194 248 -14 679 199 35 35 chr11 71253630 71253740 -79529813 + FLAM_A SINE Alu 1 110 -201 1859 125 3 30 chr11 71253740 71254012 -79529541 + AluSq SINE Alu 1 279 -34 282 29 0 0 chr11 71254012 71254047 -79529506 + (TC)n Simple_repeat Simple_repeat 1 35 0 * 288 0 0 0 chr11 71254046 71254078 -79529475 + (CA)n Simple_repeat Simple_repeat 1 32 0 1859 125 3 30 chr11 71254047 71254102 -79529451 + AluSq SINE Alu 279 289 -24 679 199 35 35 chr11 71254102 71254132 -79529421 + FLAM_A SINE Alu 109 141 -170 1939 128 3 17 chr11 71254140 71254430 -79529123 + AluSg SINE Alu 1 286 -24 1947 121 6 19 chr11 71254437 71254752 -79528801 + AluSx SINE Alu 1 311 -1 2154 109 0 0 chr11 71254754 71255047 -79528506 + AluY SINE Alu 1 293 -18 638 177 48 32 chr11 71255050 71255174 -79528379 + FLAM_A SINE Alu 1 126 -16 366 218 0 79 chr11 71255181 71255282 -79528271 + MIR SINE MIR 13 105 -157 1141 275 19 3 chr11 71255338 71255654 -79527899 + MER20B DNA MER1_type 97 417 -366 695 202 0 0 chr11 71255706 71255835 -79527718 + FLAM_C SINE Alu 14 142 -1 1969 137 0 10 chr11 71255947 71256254 -79527299 - AluSx SINE Alu -8 304 1 223 27 27 27 chr11 71256264 71256301 -79527252 + (TTA)n Simple_repeat Simple_repeat 2 38 0 823 99 8 0 chr11 71256301 71256422 -79527131 - AluJb SINE Alu -190 122 1 442 314 165 16 chr11 71256819 71257188 -79526365 + L2 LINE L2 2290 2713 -601 1987 125 3 0 chr11 71257188 71257477 -79526076 + AluSx SINE Alu 1 290 -22 2109 95 0 3 chr11 71257482 71257777 -79525776 + AluSg SINE Alu 2 295 -15 232 176 29 15 chr11 71257922 71257990 -79525563 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 2005 89 0 0 chr11 71258000 71258259 -79525294 - AluY SINE Alu -52 259 1 842 130 0 36 chr11 71258912 71259041 -79524512 + AluJo/FLAM SINE Alu 1 126 -186 1881 144 0 33 chr11 71259041 71259205 -79524348 - AluSx SINE Alu -16 296 145 2173 112 0 3 chr11 71259205 71259508 -79524045 - AluSx SINE Alu -6 306 5 1881 144 0 33 chr11 71259508 71259649 -79523904 - AluSx SINE Alu -167 145 1 2234 74 3 27 chr11 71259662 71259960 -79523593 - AluY SINE Alu -20 291 1 1793 110 125 15 chr11 71260026 71260039 -79523514 + MER83C LTR ERV1 1 11 -362 4698 65 8 3 chr11 71260039 71260627 -79522926 - LTR10C LTR ERV1 0 591 1 1793 110 125 15 chr11 71260627 71260949 -79522604 + MER83C LTR ERV1 11 373 0 2303 72 27 0 chr11 71261014 71261307 -79522246 - AluY SINE Alu -10 301 1 243 214 32 135 chr11 71261498 71261624 -79521929 - MIR SINE MIR -103 159 47 220 350 50 7 chr11 71262004 71262144 -79521409 - MIR3 SINE MIR -59 149 4 194 250 17 0 chr11 71262474 71262534 -79521019 - MIR SINE MIR -63 145 85 303 404 40 31 chr11 71263320 71263545 -79520008 - L1MC4a LINE L1 -1897 5911 5685 344 217 96 0 chr11 71263666 71263749 -79519804 - L2 LINE L2 -31 3282 3192 318 368 97 32 chr11 71263798 71264342 -79519211 + L2 LINE L2 2593 3186 -86 2167 110 7 0 chr11 71264360 71264668 -79518885 + AluSp SINE Alu 1 310 -3 314 300 177 8 chr11 71264722 71264852 -79518701 - L3 LINE CR1 -3 1574 1423 434 279 42 48 chr11 71265020 71265185 -79518368 - MIR3 SINE MIR -8 200 37 790 140 0 0 chr11 71265385 71265492 -79518061 + AluJo/FLAM SINE Alu 3 109 -203 538 136 0 23 chr11 71265487 71265575 -79517978 + FLAM SINE Alu 44 129 -14 * 383 187 27 0 chr11 71265710 71265785 -79517768 - MER46C DNA MER2_type -7 331 255 336 267 82 44 chr11 71265913 71266048 -79517505 - MIR3 SINE MIR -20 188 49 238 264 83 14 chr11 71266620 71266692 -79516861 + MIR SINE MIR 107 183 -79 1872 142 14 3 chr11 71266703 71266998 -79516555 + AluSx SINE Alu 1 298 -14 1970 112 29 0 chr11 71267015 71267293 -79516260 + AluSg SINE Alu 15 300 -10 675 184 46 0 chr11 71267367 71267476 -79516077 + FLAM_A SINE Alu 1 114 -19 1843 132 3 49 chr11 71267477 71267749 -79515804 + AluSq SINE Alu 1 284 -29 336 24 0 0 chr11 71267749 71267790 -79515763 + (TC)n Simple_repeat Simple_repeat 1 41 0 198 0 0 0 chr11 71267789 71267811 -79515742 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 1843 132 3 49 chr11 71267790 71267865 -79515688 + AluSq SINE Alu 284 312 -1 1976 128 3 17 chr11 71267873 71268163 -79515390 + AluSg SINE Alu 1 286 -24 1973 121 6 19 chr11 71268170 71268485 -79515068 + AluSx SINE Alu 1 311 -1 2260 75 54 0 chr11 71268487 71268782 -79514771 + AluY SINE Alu 1 311 0 188 339 62 0 chr11 71268783 71268848 -79514705 - L2 LINE L2 -15 3257 3189 1869 125 3 59 chr11 71269054 71269374 -79514179 + AluJb SINE Alu 1 302 -10 228 327 115 0 chr11 71270614 71270727 -79512826 - L2 LINE L2 -11 3261 3136 1939 126 45 0 chr11 71271349 71271635 -79511918 - AluJb SINE Alu -13 299 1 2214 67 0 3 chr11 71271643 71271963 -79511590 - AluY SINE Alu 0 320 2 220 232 18 0 chr11 71272307 71272363 -79511190 + (TTCA)n Simple_repeat Simple_repeat 3 59 0 1713 146 39 0 chr11 71273284 71273564 -79509989 - AluJb SINE Alu -15 297 7 216 294 33 0 chr11 71275324 71275416 -79508137 + MIR SINE MIR 22 116 -92 191 348 116 22 chr11 71275750 71275888 -79507665 + MIR SINE MIR 53 203 -59 332 239 14 0 chr11 71275926 71275997 -79507556 - MIR SINE MIR -101 161 90 262 291 35 0 chr11 71276796 71276882 -79506671 - MIR SINE MIR -72 136 48 277 314 119 70 chr11 71277457 71277642 -79505911 + L3 LINE CR1 1300 1493 -84 224 339 45 9 chr11 71280042 71280154 -79503399 - MIR SINE MIR -57 151 36 1694 160 0 4 chr11 71280177 71280445 -79503108 - AluJo SINE Alu -45 267 1 2084 95 7 23 chr11 71281629 71281933 -79501620 - AluSx SINE Alu -13 299 1 22 35 0 0 chr11 71283142 71283171 -79500382 + GC_rich Low_complexity Low_complexity 1 29 0 433 318 118 36 chr11 71283609 71283750 -79499803 - MIR SINE MIR -2 260 93 2102 129 0 0 chr11 71283750 71284053 -79499500 + AluSq SINE Alu 1 303 -10 433 318 118 36 chr11 71284053 71284131 -79499422 - MIR SINE MIR -169 93 23 191 327 69 0 chr11 71284300 71284401 -79499152 - L2 LINE L2 -29 3243 3136 1012 71 0 0 chr11 71284406 71284533 -79499020 + AluSq/x SINE Alu 1 127 -185 2221 88 0 7 chr11 71284539 71284834 -79498719 + AluSc SINE Alu 1 293 -16 3514 171 51 42 chr11 71284835 71285555 -79497998 + LTR8A LTR ERV1 1 727 0 218 325 117 0 chr11 71285555 71285675 -79497878 - MIR3 SINE MIR -43 165 32 1672 136 62 98 chr11 71285753 71285957 -79497596 + MER4D LTR ERV1 1 211 -692 1787 191 3 0 chr11 71285957 71286256 -79497297 + AluJb SINE Alu 1 300 -12 2452 60 3 0 chr11 71286257 71286559 -79496994 + AluY SINE Alu 1 303 -8 1672 136 62 98 chr11 71286559 71286621 -79496932 + MER4D LTR ERV1 211 274 -629 2296 87 0 3 chr11 71286621 71286919 -79496634 + AluSx SINE Alu 1 297 -15 1250 166 66 106 chr11 71286925 71287070 -79496483 + AluSx SINE Alu 5 133 -169 201 39 0 0 chr11 71287070 71287096 -79496457 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 1250 166 66 106 chr11 71287096 71287252 -79496301 + AluSx SINE Alu 133 294 -8 1672 136 62 98 chr11 71287252 71287425 -79496128 + MER4D LTR ERV1 279 434 -469 1979 106 10 32 chr11 71289275 71289587 -79493966 + AluSx SINE Alu 1 305 -7 509 186 64 0 chr11 71289594 71289734 -79493819 + L1MA7 LINE L1 6139 6287 -4 587 189 0 0 chr11 71289801 71289891 -79493662 + FAM SINE Alu 74 163 -22 26 0 0 0 chr11 71289895 71289921 -79493632 + AT_rich Low_complexity Low_complexity 1 26 0 941 238 159 23 chr11 71289923 71290391 -79493162 - L2 LINE L2 -247 3066 2535 218 326 81 0 chr11 71290453 71290539 -79493014 - MIR3 SINE MIR -17 191 99 232 362 141 7 chr11 71291837 71292284 -79491269 + L2 LINE L2 602 1108 -2206 180 293 132 48 chr11 71292665 71292832 -79490721 + L2 LINE L2 1707 1887 -1427 2356 80 0 3 chr11 71293200 71293499 -79490054 - AluSp SINE Alu -15 298 1 1442 151 26 11 chr11 71293503 71293775 -79489778 - L1MB7 LINE L1 -47 6137 5862 1001 144 60 0 chr11 71293888 71294055 -79489498 - AluSg/x SINE Alu -18 292 116 327 48 0 0 chr11 71294055 71294097 -79489456 - U4 snRNA snRNA -85 60 19 1135 97 0 7 chr11 71294097 71294251 -79489302 - AluSq SINE Alu -160 153 1 398 247 151 27 chr11 71294251 71294529 -79489024 + L2 LINE L2 2879 3308 -5 2196 75 11 0 chr11 71294630 71294912 -79488641 - AluSx SINE Alu -25 287 3 2496 55 0 3 chr11 71298581 71298890 -79484663 - AluY SINE Alu -3 308 1 2142 112 20 0 chr11 71299321 71299626 -79483927 - AluSx SINE Alu -1 311 1 781 181 5 109 chr11 71300001 71300194 -79483359 - AluJb SINE Alu -3 309 137 2024 123 7 3 chr11 71300399 71300701 -79482852 - AluSq SINE Alu -10 303 1 2002 106 17 20 chr11 71300938 71301240 -79482313 - AluSq SINE Alu -12 301 1 1928 139 0 7 chr11 71301244 71301531 -79482022 - AluSx SINE Alu 0 312 28 271 274 85 73 chr11 71302490 71302654 -79480899 + MIR SINE MIR 51 216 -46 1587 206 0 16 chr11 71308825 71309131 -79474422 + AluJo SINE Alu 1 301 -11 1476 187 17 3 chr11 71309342 71309636 -79473917 + AluJb SINE Alu 13 310 -2 646 139 37 0 chr11 71309690 71309798 -79473755 - FLAM_A SINE Alu -10 132 21 371 263 168 0 chr11 71309798 71309935 -79473618 + MIR SINE MIR 41 200 -62 2282 102 0 0 chr11 71310005 71310308 -79473245 - AluSq SINE Alu -10 303 1 2295 64 3 10 chr11 71310319 71310617 -79472936 - AluY SINE Alu -15 296 1 228 340 33 39 chr11 71310625 71310681 -79472872 - MIR SINE MIR -107 155 100 1851 116 53 0 chr11 71310681 71310965 -79472588 - AluSx SINE Alu -13 299 1 228 340 33 39 chr11 71310965 71311061 -79472492 - MIR SINE MIR -162 100 4 2197 103 0 3 chr11 71311641 71311943 -79471610 + AluSx SINE Alu 1 301 -11 197 280 68 90 chr11 71312086 71312223 -79471330 + MIR SINE MIR 31 163 -63 1450 170 68 20 chr11 71312241 71312535 -79471018 - AluSp SINE Alu -5 308 1 1847 143 7 3 chr11 71312563 71312864 -79470689 + AluSp SINE Alu 2 303 -10 2142 107 0 10 chr11 71312939 71313248 -79470305 - AluY SINE Alu -5 306 1 766 254 57 5 chr11 71313313 71313506 -79470047 + MIR SINE MIR 14 216 -46 324 345 48 19 chr11 71313622 71313828 -79469725 + L2 LINE L2 3098 3309 -4 250 340 196 16 chr11 71313841 71314153 -79469400 - L2 LINE L2 -1492 1822 1455 812 251 141 0 chr11 71314437 71314664 -79468889 - MIR SINE MIR -1 261 3 304 275 107 21 chr11 71314668 71314832 -79468721 + MIR SINE MIR 4 145 -63 2239 84 14 0 chr11 71315015 71315312 -79468241 - AluSq SINE Alu -12 301 1 2100 123 0 0 chr11 71315512 71315814 -79467739 + AluSx SINE Alu 1 302 -10 362 297 161 42 chr11 71316988 71317028 -79466525 - L1MEc LINE L1 -5183 1357 1323 2178 92 16 10 chr11 71317028 71317332 -79466221 - AluSx SINE Alu -6 306 1 362 297 161 42 chr11 71317332 71317603 -79465950 - L1MEc LINE L1 -5217 1323 1033 1667 147 3 25 chr11 71318090 71318225 -79465328 + AluJb SINE Alu 1 137 -175 2205 84 3 0 chr11 71318225 71318511 -79465042 + AluSp SINE Alu 9 295 -18 1667 147 3 25 chr11 71318511 71318661 -79464892 + AluJb SINE Alu 137 280 -32 2029 128 14 0 chr11 71318724 71319020 -79464533 - AluSq SINE Alu -13 300 1 665 212 35 106 chr11 71319102 71319179 -79464374 - MIR SINE MIR 0 262 181 728 96 165 17 chr11 71319179 71319294 -79464259 - FLAM_C SINE Alu 0 133 2 665 212 35 106 chr11 71319294 71319442 -79464111 - MIR SINE MIR -81 181 53 1495 161 0 8 chr11 71319443 71319698 -79463855 - AluJo SINE Alu -53 259 7 230 0 33 0 chr11 71320834 71320864 -79462689 + (TG)n Simple_repeat Simple_repeat 2 32 0 588 138 19 183 chr11 71321360 71321721 -79461832 - AluJb SINE Alu -9 303 2 2026 123 3 3 chr11 71322110 71322411 -79461142 + AluSx SINE Alu 1 301 -11 2303 230 109 46 chr11 71322434 71322532 -79461021 - HAL1 LINE L1 -78 2429 2339 1701 185 0 37 chr11 71322532 71322711 -79460842 - AluJo SINE Alu 0 312 149 2191 110 0 10 chr11 71322711 71323021 -79460532 - AluSc SINE Alu -2 307 1 1701 185 0 37 chr11 71323021 71323165 -79460388 - AluJo SINE Alu -163 149 1 2303 230 109 46 chr11 71323165 71323980 -79459573 - HAL1 LINE L1 -168 2339 1453 2111 123 0 3 chr11 71323980 71324281 -79459272 - AluSx SINE Alu -12 300 1 2303 230 109 46 chr11 71324281 71324314 -79459239 - HAL1 LINE L1 -1054 1453 1423 1971 127 3 3 chr11 71324375 71324667 -79458886 + AluSx SINE Alu 1 292 -20 474 274 174 35 chr11 71324674 71324933 -79458620 - MLT1J2 LTR MaLR -46 404 110 1358 151 3 39 chr11 71324933 71325245 -79458308 - AluY SINE Alu -10 301 1 2041 123 0 3 chr11 71325253 71325545 -79458008 - AluSx SINE Alu -21 291 1 266 318 127 0 chr11 71325573 71325699 -79457854 + MIR SINE MIR 111 252 -10 290 317 133 0 chr11 71326504 71326624 -79456929 - MIR SINE MIR -32 230 95 251 336 19 19 chr11 71327307 71327414 -79456139 + L2 LINE L2 3158 3264 -8 353 247 11 0 chr11 71327416 71327509 -79456044 - MIR SINE MIR -107 155 62 395 290 7 41 chr11 71327724 71327869 -79455684 + MIR SINE MIR 21 160 -102 4765 36 2 2 chr11 71328003 71328562 -79454991 - L1PA4 LINE L1 -3 6152 5594 2291 72 27 0 chr11 71328564 71328856 -79454697 - AluY SINE Alu -11 300 1 37 0 0 0 chr11 71328865 71328902 -79454651 + AT_rich Low_complexity Low_complexity 1 37 0 1713 180 16 16 chr11 71328908 71329219 -79454334 + AluSx SINE Alu 1 311 -1 2121 102 0 3 chr11 71329224 71329533 -79454020 + AluSp SINE Alu 3 310 0 2339 52 0 10 chr11 71329610 71329901 -79453652 - AluY SINE Alu -23 288 1 426 143 44 0 chr11 71330470 71330561 -79452992 + MER53 DNA DNA 1 95 -94 * 453 100 38 0 chr11 71330491 71330571 -79452982 - MER53 DNA DNA -12 177 95 1969 121 10 3 chr11 71330870 71331167 -79452386 - AluSx SINE Alu -12 300 2 1917 120 20 23 chr11 71331454 71331755 -79451798 + AluSx SINE Alu 1 300 -12 769 126 14 84 chr11 71331783 71331926 -79451627 + FLAM_C SINE Alu 1 133 0 210 225 0 0 chr11 71334100 71334140 -79449413 + CT-rich Low_complexity Low_complexity 2 41 0 2037 64 3 96 chr11 71335103 71335439 -79448114 - AluSq SINE Alu 0 307 1 204 363 142 15 chr11 71336452 71336656 -79446897 + L3 LINE CR1 1261 1490 -87 2312 74 3 0 chr11 71336656 71336952 -79446601 - AluSp SINE Alu -16 297 1 1307 151 98 42 chr11 71337945 71338210 -79445343 - AluJb SINE Alu -32 280 1 826 154 40 0 chr11 71340379 71340528 -79443025 + L1PA16 LINE L1 6011 6165 -1 611 257 20 0 chr11 71340547 71340695 -79442858 + LTR41 LTR ERVL 1 151 -622 285 283 118 26 chr11 71340874 71341026 -79442527 + LTR41 LTR ERVL 496 661 -112 663 218 24 99 chr11 71341036 71341104 -79442449 + MER58A DNA MER1_type 30 102 -2318 1810 133 3 24 chr11 71341104 71341398 -79442155 - AluJb SINE Alu -24 288 1 663 218 24 99 chr11 71341398 71341540 -79442013 + MER58A DNA MER1_type 102 224 0 1985 108 27 24 chr11 71341578 71341875 -79441678 - AluSx SINE Alu -14 298 1 201 282 14 14 chr11 71342558 71342629 -79440924 + L2 LINE L2 2977 3047 -225 606 267 25 77 chr11 71342776 71343154 -79440399 + LTR16C LTR ERVL 87 491 0 400 342 70 63 chr11 71343298 71343739 -79439814 + L2 LINE L2 2828 3271 -1 1106 210 4 44 chr11 71343959 71344188 -79439365 + MER58A DNA MER1_type 2 221 -3 1822 159 13 3 chr11 71345784 71346093 -79437460 - AluJo SINE Alu 0 312 1 758 175 0 8 chr11 71346137 71346257 -79437296 - FLAM_C SINE Alu -18 125 7 2035 109 7 3 chr11 71348005 71348299 -79435254 - AluSg1 SINE Alu -13 296 2 1987 125 3 0 chr11 71348304 71348593 -79434960 - AluSx SINE Alu -22 290 1 442 314 165 16 chr11 71348593 71348962 -79434591 - L2 LINE L2 -601 2713 2290 823 99 8 0 chr11 71349359 71349480 -79434073 + AluJb SINE Alu 1 122 -190 223 27 27 27 chr11 71349480 71349517 -79434036 + (TAA)n Simple_repeat Simple_repeat 2 38 0 1882 104 17 17 chr11 71349527 71349826 -79433727 + AluSg SINE Alu 1 299 -11 2568 35 3 0 chr11 71349930 71350240 -79433313 - AluY SINE Alu 0 311 1 1019 159 0 11 chr11 71350327 71350509 -79433044 - AluSg/x SINE Alu -9 301 122 379 43 0 0 chr11 71350509 71350555 -79432998 - U4 snRNA snRNA -81 64 19 1083 103 0 13 chr11 71350555 71350710 -79432843 - AluSq SINE Alu -160 153 1 184 327 69 0 chr11 71350715 71350816 -79432737 + L2 LINE L2 3136 3243 -29 408 318 118 36 chr11 71350986 71351064 -79432489 + MIR SINE MIR 23 93 -169 2068 129 0 0 chr11 71351064 71351367 -79432186 - AluSq SINE Alu -10 303 1 408 318 118 36 chr11 71351367 71351508 -79432045 + MIR SINE MIR 93 260 -2 210 225 0 0 chr11 71354062 71354102 -79429451 + CT-rich Low_complexity Low_complexity 2 41 0 2018 62 3 97 chr11 71355058 71355390 -79428163 - AluSq SINE Alu 0 307 5 2312 74 3 0 chr11 71356616 71356912 -79426641 - AluSp SINE Alu -16 297 1 1307 151 98 42 chr11 71357905 71358170 -79425383 - AluJb SINE Alu -32 280 1 753 154 40 0 chr11 71360339 71360488 -79423065 + L1PA16 LINE L1 6011 6165 -1 586 257 20 0 chr11 71360507 71360655 -79422898 + LTR41 LTR ERVL 1 151 -622 251 283 118 26 chr11 71360834 71360986 -79422567 + LTR41 LTR ERVL 496 661 -112 652 218 24 99 chr11 71360996 71361064 -79422489 + MER58A DNA MER1_type 30 102 -2318 2033 131 3 14 chr11 71361064 71361355 -79422198 - AluJb SINE Alu -24 288 1 652 218 24 99 chr11 71361355 71361497 -79422056 + MER58A DNA MER1_type 102 224 0 2116 108 27 24 chr11 71361535 71361832 -79421721 - AluSx SINE Alu -14 298 1 195 282 14 14 chr11 71362515 71362586 -79420967 + L2 LINE L2 2977 3047 -225 554 276 26 77 chr11 71362733 71363005 -79420548 + LTR16C LTR ERVL 87 344 -147 300 160 0 0 chr11 71363061 71363111 -79420442 + LTR16C LTR ERVL 442 491 0 364 326 75 68 chr11 71363255 71363696 -79419857 + L2 LINE L2 2828 3271 -1 1007 210 4 44 chr11 71363916 71364145 -79419408 + MER58A DNA MER1_type 2 221 -3 1943 159 13 3 chr11 71365778 71366087 -79417466 - AluJo SINE Alu 0 312 1 712 175 0 8 chr11 71366129 71366249 -79417304 - FLAM_C SINE Alu -18 125 7 2276 101 0 3 chr11 71368002 71368299 -79415254 - AluSg1 SINE Alu -13 296 1 882 226 0 0 chr11 71368323 71368491 -79415062 - MER58B DNA MER1_type -3 338 171 2588 64 0 0 chr11 71368491 71368788 -79414765 + AluY SINE Alu 1 297 -14 249 250 110 66 chr11 71369089 71369225 -79414328 + MIR SINE MIR 51 192 -70 1609 207 3 16 chr11 71375417 71375722 -79407831 + AluJo SINE Alu 1 301 -11 1571 188 17 3 chr11 71375933 71376226 -79407327 + AluJb SINE Alu 13 309 -3 597 139 37 0 chr11 71376279 71376387 -79407166 - FLAM_A SINE Alu -10 132 21 374 263 168 0 chr11 71376387 71376524 -79407029 + MIR SINE MIR 41 200 -62 2403 87 0 23 chr11 71376595 71376905 -79406648 - AluSq SINE Alu -10 303 1 704 240 13 0 chr11 71376925 71377079 -79406474 + FRAM SINE Alu 1 154 -22 601 167 33 25 chr11 71377085 71377205 -79406348 - FLAM_A SINE Alu -12 121 1 310 167 0 0 chr11 71377250 71377304 -79406249 + Alu SINE Alu 248 301 0 1020 196 172 24 chr11 71377318 71377454 -79406099 - Tigger2a DNA MER2_type -2328 380 265 2269 124 0 0 chr11 71377454 71377753 -79405800 + AluSx SINE Alu 1 299 -13 1020 196 172 24 chr11 71377753 71377947 -79405606 - Tigger2a DNA MER2_type -2443 265 1 476 176 49 10 chr11 71378301 71378403 -79405150 - FLAM_A SINE Alu -34 108 3 427 257 318 10 chr11 71378568 71378737 -79404816 - HAL1 LINE L1 -15 2492 2376 2183 69 61 4 chr11 71378737 71379014 -79404539 + AluY SINE Alu 1 293 -18 427 257 318 10 chr11 71379014 71379140 -79404413 - HAL1 LINE L1 -131 2376 2106 1271 189 122 15 chr11 71379141 71379469 -79404084 + MLT1A1 LTR MaLR 1 363 -2 2456 67 0 3 chr11 71379482 71379780 -79403773 + AluY SINE Alu 1 297 -14 453 242 10 0 chr11 71379785 71379884 -79403669 - HAL1 LINE L1 -623 1884 1785 560 191 26 0 chr11 71380106 71380221 -79403332 - AluSg/x SINE Alu -26 286 169 2431 91 0 0 chr11 71380241 71380548 -79403005 - AluY SINE Alu -4 307 1 1986 127 3 7 chr11 71380550 71380842 -79402711 - AluSq SINE Alu -22 291 1 695 207 30 24 chr11 71381252 71381416 -79402137 + FRAM SINE Alu 2 166 0 886 238 22 0 chr11 71381595 71381780 -79401773 - AluJo SINE Alu -38 274 86 2004 120 45 0 chr11 71381831 71382123 -79401430 + AluSx SINE Alu 1 305 -7 1956 135 10 0 chr11 71382305 71382594 -79400959 - AluSq SINE Alu -20 293 2 1690 183 3 14 chr11 71382600 71382890 -79400663 - AluJb SINE Alu -25 287 1 24 0 0 0 chr11 71382896 71382920 -79400633 + AT_rich Low_complexity Low_complexity 1 24 0 2131 98 14 11 chr11 71382920 71383205 -79400348 - AluSg SINE Alu -24 286 1 219 299 180 16 chr11 71383244 71383438 -79400115 + L2 LINE L2 3088 3313 0 243 122 98 0 chr11 71383863 71383904 -79399649 + L2 LINE L2 3222 3266 -6 207 100 0 0 chr11 71384924 71384954 -79398599 + (GGAAA)n Simple_repeat Simple_repeat 5 34 0 216 185 0 0 chr11 71387193 71387247 -79396306 + (CAG)n Simple_repeat Simple_repeat 2 55 0 23 0 0 0 chr11 71389950 71389973 -79393580 + AT_rich Low_complexity Low_complexity 1 23 0 697 199 0 0 chr11 71390108 71390239 -79393314 - MER46A DNA MER2_type -62 174 44 21 0 0 0 chr11 71390691 71390712 -79392841 + AT_rich Low_complexity Low_complexity 1 21 0 1940 100 54 0 chr11 71393748 71394027 -79389526 + AluSq SINE Alu 1 294 -19 898 185 133 14 chr11 71394604 71394815 -79388738 - AluJo SINE Alu -23 289 54 2364 81 0 10 chr11 71394815 71395110 -79388443 + AluSx SINE Alu 1 292 -20 1504 171 18 18 chr11 71395222 71395496 -79388057 - AluJo SINE Alu -23 289 16 243 0 0 0 chr11 71395516 71395543 -79388010 + (T)n Simple_repeat Simple_repeat 1 27 0 210 225 0 0 chr11 71398464 71398504 -79385049 + CT-rich Low_complexity Low_complexity 2 41 0 1947 118 44 0 chr11 71399465 71399760 -79383793 - AluSq SINE Alu 0 307 1 2802 13 3 0 chr11 71399770 71400072 -79383481 - AluYa5 SINE Alu -8 303 1 1994 159 7 3 chr11 71401060 71401362 -79382191 + AluJb SINE Alu 1 303 -9 2140 123 6 22 chr11 71402089 71402406 -79381147 - AluSx SINE Alu 0 312 1 2110 111 3 32 chr11 71402484 71402799 -79380754 + AluSg1 SINE Alu 1 306 -3 917 130 0 0 chr11 71403700 71403831 -79379722 - AluSg/x SINE Alu -7 303 173 2420 90 3 0 chr11 71404785 71405086 -79378467 + AluSp SINE Alu 1 302 -11 450 308 31 8 chr11 71406270 71406400 -79377153 - MIR SINE MIR -108 154 22 1842 117 17 47 chr11 71406535 71406833 -79376720 + AluJo SINE Alu 9 297 -15 732 170 85 20 chr11 71407468 71407621 -79375932 + FRAM SINE Alu 1 163 -3 1677 159 19 62 chr11 71409636 71409778 -79373775 + AluJb SINE Alu 3 149 -163 2307 97 20 0 chr11 71409778 71410077 -79373476 + AluSq SINE Alu 1 305 -8 2064 94 94 0 chr11 71410083 71410360 -79373193 + AluSq SINE Alu 1 303 -10 850 186 32 0 chr11 71410362 71410518 -79373035 + AluJo/FRAM SINE Alu 137 297 -5 357 82 0 0 chr11 71410793 71410842 -79372711 + (CA)n Simple_repeat Simple_repeat 2 50 0 1546 114 134 15 chr11 71410904 71411166 -79372387 + AluSg1 SINE Alu 1 293 -16 2225 118 3 3 chr11 71411834 71412138 -79371415 + AluSx SINE Alu 3 306 -6 725 193 165 0 chr11 71412199 71412375 -79371178 + MER3 DNA MER1_type 1 205 -4 2274 112 0 0 chr11 71412492 71412786 -79370767 - AluSx SINE Alu -18 294 1 2500 76 0 7 chr11 71413579 71413883 -79369670 + AluY SINE Alu 1 302 -9 1808 131 52 17 chr11 71413888 71414179 -79369374 + AluSx SINE Alu 1 301 -11 875 330 124 29 chr11 71414261 71414952 -79368601 - L2 LINE L2 -192 3080 2302 2203 110 3 31 chr11 71414952 71415269 -79368284 + AluSg SINE Alu 1 308 -2 875 330 124 29 chr11 71415269 71415373 -79368180 - L2 LINE L2 -970 2302 2209 24 0 0 29 chr11 71415563 71415579 -79367974 + AT_rich Low_complexity Low_complexity 1 16 -18 2196 122 0 0 chr11 71415579 71415875 -79367678 - AluSx SINE Alu -16 296 1 24 0 0 29 chr11 71415875 71415893 -79367660 + AT_rich Low_complexity Low_complexity 16 34 0 270 81 0 0 chr11 71416045 71416082 -79367471 - MER20 DNA MER1_type -65 154 118 237 83 0 0 chr11 71416156 71416192 -79367361 + (A)n Simple_repeat Simple_repeat 1 36 0 2234 92 7 23 chr11 71416202 71416508 -79367045 + AluSp SINE Alu 1 301 -12 1488 146 88 11 chr11 71416519 71416779 -79366774 + AluJb SINE Alu 11 290 -22 1502 199 3 49 chr11 71416790 71416818 -79366735 + AluJo SINE Alu 1 29 -283 2383 94 3 3 chr11 71416818 71417126 -79366427 - AluSx SINE Alu -4 308 1 1502 199 3 49 chr11 71417126 71417423 -79366130 + AluJo SINE Alu 29 311 -1 412 250 62 23 chr11 71417430 71417558 -79365995 + L1ME1 LINE L1 5991 6123 -43 2041 138 3 30 chr11 71417558 71417862 -79365691 + AluSx SINE Alu 3 298 -14 2005 137 3 17 chr11 71417945 71418082 -79365471 + AluSp SINE Alu 1 138 -175 2342 96 0 13 chr11 71418082 71418385 -79365168 + AluY SINE Alu 1 299 -12 2005 137 3 17 chr11 71418385 71418547 -79365006 + AluSp SINE Alu 138 296 -17 491 257 183 8 chr11 71418633 71418940 -79364613 + L2 LINE L2 2692 3046 -267 1776 164 34 0 chr11 71418942 71419234 -79364319 + AluJb SINE Alu 1 302 -10 2213 107 7 0 chr11 71419236 71419526 -79364027 + AluSq SINE Alu 2 293 -20 1189 127 0 0 chr11 71419527 71419692 -79363861 + AluSg/x SINE Alu 132 296 -14 1696 157 3 58 chr11 71419701 71420014 -79363539 + AluJb SINE Alu 1 296 -16 2396 68 3 17 chr11 71420014 71420309 -79363244 - AluY SINE Alu -20 291 1 706 240 13 0 chr11 71420328 71420482 -79363071 + FRAM SINE Alu 1 154 -22 601 167 33 25 chr11 71420488 71420608 -79362945 - FLAM_A SINE Alu -12 121 1 321 148 0 0 chr11 71420653 71420707 -79362846 + Alu SINE Alu 248 301 0 677 103 169 0 chr11 71420721 71420857 -79362696 - Tigger2a DNA MER2_type -54 380 222 2278 123 0 0 chr11 71420857 71421157 -79362396 + AluSx SINE Alu 1 300 -12 1063 122 0 39 chr11 71421157 71421337 -79362216 - Tigger2a DNA MER2_type -261 173 1 476 176 49 10 chr11 71421691 71421793 -79361760 - FLAM_A SINE Alu -34 108 3 423 251 322 10 chr11 71421958 71422127 -79361426 - HAL1 LINE L1 -15 2492 2377 2192 68 61 4 chr11 71422127 71422405 -79361148 + AluY SINE Alu 1 294 -17 423 251 322 10 chr11 71422405 71422530 -79361023 - HAL1 LINE L1 -130 2377 2106 1271 189 122 15 chr11 71422531 71422859 -79360694 + MLT1A1 LTR MaLR 1 363 -2 2456 67 0 3 chr11 71422872 71423170 -79360383 + AluY SINE Alu 1 297 -14 453 242 10 0 chr11 71423175 71423274 -79360279 - HAL1 LINE L1 -623 1884 1785 560 191 26 0 chr11 71423496 71423611 -79359942 - AluSg/x SINE Alu -26 284 167 2431 91 0 0 chr11 71423631 71423938 -79359615 - AluY SINE Alu -4 307 1 2116 116 0 7 chr11 71423940 71424233 -79359320 - AluSq SINE Alu -22 291 1 695 207 30 24 chr11 71424643 71424807 -79358746 + FRAM SINE Alu 2 166 0 886 238 22 0 chr11 71424986 71425171 -79358382 - AluJo SINE Alu -38 274 86 2049 119 41 0 chr11 71425222 71425515 -79358038 + AluSx SINE Alu 1 305 -7 1956 135 10 0 chr11 71425697 71425986 -79357567 - AluSq SINE Alu -20 293 2 1690 183 3 14 chr11 71425992 71426282 -79357271 - AluJb SINE Alu -25 287 1 24 0 0 0 chr11 71426288 71426312 -79357241 + AT_rich Low_complexity Low_complexity 1 24 0 2096 98 14 14 chr11 71426312 71426598 -79356955 - AluSg SINE Alu -24 286 1 219 299 180 16 chr11 71426637 71426831 -79356722 + L2 LINE L2 3088 3313 0 243 122 98 0 chr11 71427256 71427297 -79356256 + L2 LINE L2 3222 3266 -6 202 170 38 38 chr11 71428291 71428344 -79355209 + GA-rich Low_complexity Low_complexity 4 56 0 216 185 0 0 chr11 71430581 71430635 -79352918 + (CAG)n Simple_repeat Simple_repeat 2 55 0 23 0 0 0 chr11 71433338 71433361 -79350192 + AT_rich Low_complexity Low_complexity 1 23 0 697 199 0 0 chr11 71433496 71433627 -79349926 - MER46A DNA MER2_type -62 174 44 21 0 0 0 chr11 71434079 71434100 -79349453 + AT_rich Low_complexity Low_complexity 1 21 0 1896 101 58 0 chr11 71437129 71437407 -79346146 + AluSq SINE Alu 1 294 -19 898 185 133 14 chr11 71437985 71438196 -79345357 - AluJo SINE Alu -23 289 54 2364 81 0 10 chr11 71438196 71438491 -79345062 + AluSx SINE Alu 1 292 -20 1504 171 18 18 chr11 71438603 71438877 -79344676 - AluJo SINE Alu -23 289 16 540 62 12 0 chr11 71438897 71438977 -79344576 - Alu SINE Alu -3 306 226 2218 100 0 32 chr11 71439086 71439397 -79344156 - AluSx SINE Alu -11 301 1 240 333 100 8 chr11 71440841 71440961 -79342592 + HAL1 LINE L1 16 146 -2361 869 108 78 0 chr11 71440984 71441113 -79342440 - AluSq SINE Alu -39 274 136 2453 82 0 0 chr11 71441115 71441418 -79342135 - AluSq SINE Alu -10 303 1 697 105 0 0 chr11 71441731 71441826 -79341727 - AluJ/FLAM SINE Alu -216 96 2 1210 152 5 9 chr11 71441826 71442037 -79341516 - L1MB7 LINE L1 -109 6075 5866 2230 126 10 0 chr11 71442037 71442346 -79341207 - AluSx SINE Alu 0 312 1 972 177 59 12 chr11 71442350 71442676 -79340877 - L1MB7 LINE L1 -683 5491 5149 694 236 0 0 chr11 71442707 71442851 -79340702 + FRAM SINE Alu 1 144 -32 200 297 125 31 chr11 71442856 71442984 -79340569 + MIR SINE MIR 87 226 -36 374 290 51 7 chr11 71443108 71443246 -79340307 + L2 LINE L2 3169 3312 -1 293 114 0 0 chr11 71443272 71443316 -79340237 + Alu SINE Alu 244 287 -15 2191 73 0 67 chr11 71443337 71443448 -79340105 + AluY SINE Alu 1 118 -193 225 0 0 0 chr11 71443448 71443473 -79340080 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 8664 26 10 274 chr11 71443478 71445311 -79338242 + SVA Other Other 38 1386 0 2191 73 0 67 chr11 71445311 71445506 -79338047 + AluY SINE Alu 122 292 -19 308 337 0 31 chr11 71445506 71445593 -79337960 + L1MC4 LINE L1 6623 6708 -1334 1211 119 6 17 chr11 71445607 71445783 -79337770 + FRAM SINE Alu 1 166 -10 2229 133 0 0 chr11 71445784 71446092 -79337461 + AluSx SINE Alu 3 310 -2 316 292 44 29 chr11 71449953 71450090 -79333463 - MIR3 SINE MIR -27 181 43 2488 75 0 3 chr11 71450275 71450580 -79332973 + AluY SINE Alu 3 306 -5 1993 158 3 0 chr11 71450690 71450994 -79332559 + AluJb SINE Alu 1 305 -7 663 291 90 8 chr11 71451211 71451445 -79332108 + MIR SINE MIR 9 261 -1 192 279 57 57 chr11 71452165 71452287 -79331266 + L2 LINE L2 2571 2692 -622 1824 153 4 0 chr11 71452295 71452563 -79330990 - AluSx SINE Alu -43 269 1 2644 47 0 3 chr11 71452577 71452876 -79330677 - AluY SINE Alu -13 298 1 216 357 16 50 chr11 71452912 71453069 -79330484 - L2 LINE L2 -88 3184 3034 817 274 54 0 chr11 71453069 71453310 -79330243 + MIR SINE MIR 3 256 -6 1480 152 132 48 chr11 71453348 71453373 -79330180 - L1MB8 LINE L1 -5 6173 6152 2396 92 0 0 chr11 71453373 71453667 -79329886 + AluY SINE Alu 1 294 -17 2550 61 0 0 chr11 71453667 71453962 -79329591 + AluY SINE Alu 1 295 -16 1480 152 132 48 chr11 71453962 71453984 -79329569 - L1MB8 LINE L1 -26 6152 6133 851 155 104 155 chr11 71453984 71454301 -79329252 + AluJo SINE Alu 2 302 0 1480 152 132 48 chr11 71454301 71454417 -79329136 - L1MB8 LINE L1 -45 6133 6028 2178 101 0 39 chr11 71454417 71454724 -79328829 + AluSx SINE Alu 1 295 -17 1480 152 132 48 chr11 71454724 71454998 -79328555 - L1MB8 LINE L1 -150 6028 5696 255 314 76 0 chr11 71455085 71455190 -79328363 - MIR SINE MIR -81 181 69 482 272 58 44 chr11 71455863 71456032 -79327521 - MIR SINE MIR -46 216 42 1999 127 3 54 chr11 71456032 71456346 -79327207 + AluSx SINE Alu 1 298 -14 482 272 58 44 chr11 71456346 71456382 -79327171 - MIR SINE MIR -220 42 8 189 400 17 17 chr11 71456444 71456564 -79326989 + L2 LINE L2 3104 3223 -49 252 0 0 0 chr11 71456579 71456607 -79326946 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 210 237 206 0 chr11 71456887 71456984 -79326569 - L2 LINE L2 -15 3257 3141 267 253 0 11 chr11 71457199 71457286 -79326267 + MER113 DNA MER1_type? 6 91 -430 2293 116 3 0 chr11 71457288 71457589 -79325964 - AluSq SINE Alu -11 302 1 1527 191 22 47 chr11 71457724 71457753 -79325800 - AluJo SINE Alu -1 311 283 222 37 0 0 chr11 71457753 71457780 -79325773 + (TCCCC)n Simple_repeat Simple_repeat 5 31 0 1527 191 22 47 chr11 71457780 71458069 -79325484 - AluJo SINE Alu -29 283 1 1017 128 0 0 chr11 71458098 71458231 -79325322 - AluSq/x SINE Alu -179 133 1 1340 215 189 4 chr11 71458337 71458772 -79324781 - MLT1F1 LTR MaLR -3 564 54 213 256 44 94 chr11 71459160 71459320 -79324233 + L2 LINE L2 2625 2776 -538 1982 133 0 13 chr11 71459490 71459625 -79323928 + AluSx SINE Alu 2 137 -165 1921 124 10 39 chr11 71459625 71459761 -79323792 + AluSx SINE Alu 1 139 -173 2480 57 0 0 chr11 71459761 71460074 -79323479 + AluY SINE Alu 1 313 0 1921 124 10 39 chr11 71460074 71460277 -79323276 + AluSx SINE Alu 139 312 0 1982 133 0 13 chr11 71460277 71460443 -79323110 + AluSx SINE Alu 137 299 -3 2087 156 0 9 chr11 71462775 71463090 -79320463 + AluJb SINE Alu 1 312 0 586 125 0 0 chr11 71463842 71463930 -79319623 - AluJ/FRAM SINE Alu -5 307 220 2055 133 0 17 chr11 71463933 71464227 -79319326 + AluSx SINE Alu 5 293 -19 2480 67 7 0 chr11 71464234 71464533 -79319020 + AluY SINE Alu 1 301 -10 1544 201 9 38 chr11 71464679 71464811 -79318742 + AluJo SINE Alu 1 135 -177 2487 53 0 0 chr11 71464811 71465147 -79318406 + AluY SINE Alu 1 336 0 1544 201 9 38 chr11 71465147 71465332 -79318221 + AluJo SINE Alu 135 310 -2 940 186 0 0 chr11 71465335 71465491 -79318062 + AluJb SINE Alu 156 311 -1 489 155 0 12 chr11 71465495 71465579 -79317974 + AluJo/FLAM SINE Alu 44 126 -186 2084 80 48 21 chr11 71465579 71465868 -79317685 - AluSq SINE Alu -16 297 1 263 230 40 0 chr11 71465870 71465944 -79317609 - HAL1 LINE L1 -159 2348 2272 1857 197 42 36 chr11 71466347 71466846 -79316707 - MLT1D LTR MaLR -13 488 1 449 213 103 65 chr11 71467066 71467221 -79316332 + MER20B DNA MER1_type 1 161 -622 829 202 18 30 chr11 71467272 71467422 -79316131 - AluJo SINE Alu -27 285 136 2079 125 3 58 chr11 71467422 71467750 -79315803 - AluSx SINE Alu -2 310 1 829 202 18 30 chr11 71467750 71467767 -79315786 - AluJo SINE Alu -176 136 120 1604 159 15 67 chr11 71467777 71467961 -79315592 - AluJo SINE Alu -2 310 149 2216 117 7 3 chr11 71467961 71468259 -79315294 - AluSx SINE Alu -7 305 7 1604 159 15 67 chr11 71468259 71468401 -79315152 - AluJo SINE Alu -163 149 1 1845 160 11 11 chr11 71468489 71468776 -79314777 - AluJb SINE Alu -21 291 5 1327 166 12 95 chr11 71468878 71469192 -79314361 + AluJb SINE Alu 1 287 -25 183 42 0 0 chr11 71469192 71469216 -79314337 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 1327 166 12 95 chr11 71469216 71469239 -79314314 + AluJb SINE Alu 287 310 -2 215 284 0 37 chr11 71469252 71469333 -79314220 - MIR3 SINE MIR -38 170 93 732 211 14 7 chr11 71469485 71469627 -79313926 - FRAM SINE Alu -26 150 8 261 0 0 0 chr11 71469638 71469667 -79313886 + (TG)n Simple_repeat Simple_repeat 2 30 0 205 200 22 0 chr11 71469667 71469706 -79313847 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 2252 87 0 7 chr11 71469709 71469998 -79313555 - AluY SINE Alu -24 287 1 732 211 14 7 chr11 71470192 71470334 -79313219 + FRAM SINE Alu 8 150 -26 215 284 0 37 chr11 71470486 71470567 -79312986 + MIR3 SINE MIR 93 170 -38 642 167 16 102 chr11 71470580 71470603 -79312950 - AluJb SINE Alu -3 309 286 183 42 0 0 chr11 71470603 71470627 -79312926 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 642 167 16 102 chr11 71470627 71470789 -79312764 - AluJb SINE Alu -26 286 140 2279 93 0 7 chr11 71470877 71471167 -79312386 - AluSx SINE Alu -24 288 1 2612 57 0 0 chr11 71471313 71471614 -79311939 - AluY SINE Alu -10 301 1 2417 88 0 0 chr11 71471614 71471908 -79311645 - AluY SINE Alu -17 294 1 817 274 54 0 chr11 71471971 71472212 -79311341 - MIR SINE MIR -6 256 3 216 357 16 50 chr11 71472212 71472369 -79311184 + L2 LINE L2 3034 3184 -88 2568 53 0 7 chr11 71472405 71472707 -79310846 + AluY SINE Alu 1 300 -11 450 308 31 8 chr11 71473890 71474020 -79309533 - MIR SINE MIR -108 154 22 1842 117 17 47 chr11 71474155 71474453 -79309100 + AluJo SINE Alu 9 297 -15 732 170 85 20 chr11 71475088 71475241 -79308312 + FRAM SINE Alu 1 163 -3 1620 151 24 65 chr11 71477253 71477395 -79306158 + AluJb SINE Alu 3 149 -163 2307 97 20 0 chr11 71477395 71477694 -79305859 + AluSq SINE Alu 1 305 -8 2072 93 93 0 chr11 71477700 71477978 -79305575 + AluSq SINE Alu 1 304 -9 1620 151 24 65 chr11 71477978 71478120 -79305433 + AluJb SINE Alu 154 282 -30 896 123 0 0 chr11 71478220 71478342 -79305211 - AluSq/x SINE Alu -191 122 1 2110 111 3 32 chr11 71478421 71478736 -79304817 + AluSg1 SINE Alu 1 306 -3 824 160 0 0 chr11 71479637 71479768 -79303785 - AluSg/x SINE Alu -7 303 173 2211 115 3 3 chr11 71480719 71481024 -79302529 + AluSp SINE Alu 1 305 -8 2013 142 3 3 chr11 71481098 71481400 -79302153 - AluSp SINE Alu -10 303 2 1556 163 61 24 chr11 71481428 71481722 -79301831 + AluSg SINE Alu 1 305 -5 193 280 68 90 chr11 71481740 71481877 -79301676 - MIR SINE MIR -63 145 31 2370 96 0 3 chr11 71482020 71482322 -79301231 - AluSx SINE Alu -11 301 1 228 340 33 39 chr11 71482902 71482998 -79300555 + MIR SINE MIR 4 100 -162 1996 113 53 0 chr11 71482998 71483282 -79300271 + AluSx SINE Alu 1 299 -13 228 340 33 39 chr11 71483282 71483338 -79300215 + MIR SINE MIR 100 155 -107 2328 80 3 10 chr11 71483346 71483645 -79299908 + AluY SINE Alu 1 297 -14 2263 125 0 0 chr11 71483656 71483960 -79299593 + AluSx SINE Alu 1 304 -8 2414 62 7 0 chr11 71484060 71484350 -79299203 - AluY SINE Alu -19 292 1 622 246 76 48 chr11 71486221 71486406 -79297147 + L2 LINE L2 2553 2731 -582 2146 121 0 10 chr11 71486406 71486711 -79296842 - AluSx SINE Alu -10 302 1 2247 100 10 10 chr11 71486713 71487012 -79296541 - AluSx SINE Alu -13 299 1 622 246 76 48 chr11 71487012 71487320 -79296233 + L2 LINE L2 2731 3060 -253 2341 105 0 0 chr11 71489263 71489559 -79293994 - AluSx SINE Alu -16 296 1 229 239 80 34 chr11 71489569 71489657 -79293896 - L1ME LINE L1 -224 5897 5806 1828 90 0 8 chr11 71490128 71490362 -79293191 - AluSg/x SINE Alu -16 296 65 710 59 128 0 chr11 71490362 71490464 -79293089 - AluSg SINE Alu -194 116 2 593 281 122 0 chr11 71492149 71492345 -79291208 + MIR SINE MIR 26 245 -17 2393 85 0 0 chr11 71492348 71492642 -79290911 + AluSg SINE Alu 1 294 -16 1811 158 28 37 chr11 71492769 71493091 -79290462 - 7SLRNA srpRNA srpRNA -1 319 1 352 214 127 55 chr11 71493092 71493262 -79290291 - MIR3 SINE MIR -6 202 18 340 179 0 0 chr11 71493317 71493384 -79290169 - L1MB7 LINE L1 -21 6163 6097 627 135 77 0 chr11 71493413 71493517 -79290036 - FLAM_C SINE Alu -24 119 8 713 201 13 13 chr11 71493517 71493676 -79289877 - L1MB7 LINE L1 -74 6110 5952 182 100 33 0 chr11 71494967 71494997 -79288556 - MER5C DNA MER1_type -6 318 288 233 367 64 0 chr11 71495179 71495288 -79288265 - MER5C DNA MER1_type -208 116 1 2272 78 11 3 chr11 71496279 71496590 -79286963 + AluY SINE Alu 1 313 0 435 305 33 0 chr11 71496676 71496827 -79286726 + MIR SINE MIR 79 234 -28 188 282 46 12 chr11 71499543 71499653 -79283900 - L2 LINE L2 -1 3312 3136 436 219 92 49 chr11 71500123 71500287 -79283266 - MER5B DNA MER1_type -3 175 5 192 77 0 0 chr11 71500377 71500403 -79283150 + (GGCTG)n Simple_repeat Simple_repeat 3 28 0 1698 82 0 5 chr11 71501888 71502095 -79281458 + AluSq SINE Alu 5 210 -103 295 200 38 50 chr11 71502332 71502412 -79281141 - MIR SINE MIR -82 180 102 2668 48 0 7 chr11 71502413 71502722 -79280831 + AluY SINE Alu 1 307 -4 2636 41 0 16 chr11 71503590 71503906 -79279647 - AluY SINE Alu 0 311 1 999 181 11 11 chr11 71504173 71504355 -79279198 - AluJb SINE Alu -11 301 120 290 293 40 20 chr11 71504498 71504597 -79278956 - MIR SINE MIR -148 114 14 24 0 0 0 chr11 71505326 71505350 -79278203 + AT_rich Low_complexity Low_complexity 1 24 0 2138 115 3 7 chr11 71505727 71506023 -79277530 + AluSx SINE Alu 1 295 -17 257 224 52 0 chr11 71506062 71506120 -79277433 + Charlie8 DNA MER1_type 1357 1417 -1000 186 271 212 7 chr11 71507580 71507731 -79275822 + L2 LINE L2 3126 3307 -6 783 203 34 0 chr11 71507881 71508058 -79275495 - MER5A DNA MER1_type -4 185 3 318 106 0 0 chr11 71509703 71509750 -79273803 + (CA)n Simple_repeat Simple_repeat 2 48 0 1677 108 135 8 chr11 71509812 71510072 -79273481 + AluSg1 SINE Alu 1 293 -16 2225 118 3 3 chr11 71510741 71511045 -79272508 + AluSx SINE Alu 3 306 -6 725 193 165 0 chr11 71511106 71511282 -79272271 + MER3 DNA MER1_type 1 205 -4 2274 112 0 0 chr11 71511399 71511693 -79271860 - AluSx SINE Alu -18 294 1 2146 125 0 31 chr11 71512487 71512808 -79270745 + AluY SINE Alu 1 311 0 1274 289 80 42 chr11 71512814 71513505 -79270048 - L2 LINE L2 -411 2903 2187 378 274 104 63 chr11 71513543 71513589 -79269964 + L2 LINE L2 1865 1908 -1406 2061 22 0 0 chr11 71513589 71513814 -79269739 + AluYb8 SINE Alu 87 311 -7 378 274 104 63 chr11 71513814 71514084 -79269469 + L2 LINE L2 1908 2194 -1120 602 324 149 7 chr11 71514088 71514552 -79269001 + L2 LINE L2 2682 3212 -60 243 88 0 0 chr11 71514711 71514745 -79268808 + (CAG)n Simple_repeat Simple_repeat 2 35 0 2331 115 0 0 chr11 71514857 71515162 -79268391 + AluSx SINE Alu 1 305 -7 1845 181 0 7 chr11 71515234 71515538 -79268015 + AluJb SINE Alu 1 302 -10 531 282 104 0 chr11 71516726 71516928 -79266625 + MIR SINE MIR 40 262 0 735 260 24 48 chr11 71517273 71517523 -79266030 + L3 LINE CR1 1280 1523 -54 210 304 0 29 chr11 71517668 71517737 -79265816 + L3 LINE CR1 1490 1556 -21 2439 98 0 0 chr11 71517739 71518046 -79265507 + AluSq SINE Alu 1 307 -6 2215 106 0 0 chr11 71518330 71518614 -79264939 - AluSc SINE Alu -25 284 1 1724 173 18 0 chr11 71518624 71518907 -79264646 - AluSx SINE Alu -24 288 1 901 137 0 0 chr11 71518917 71519041 -79264512 - FLAM_C SINE Alu -19 124 1 2094 114 7 10 chr11 71519549 71519839 -79263714 + AluSq SINE Alu 3 291 -22 2416 108 32 16 chr11 71520920 71521289 -79262264 + THE1C LTR MaLR 1 375 0 335 204 88 62 chr11 71521477 71521590 -79261963 + MIR3 SINE MIR 86 201 -7 1724 177 10 7 chr11 71521631 71521919 -79261634 - AluJo SINE Alu -20 292 4 2304 108 0 0 chr11 71522414 71522710 -79260843 - AluSx SINE Alu -16 296 1 233 318 127 0 chr11 71522738 71522864 -79260689 + MIR SINE MIR 111 252 -10 2559 57 0 0 chr11 71523671 71523968 -79259585 - AluSq SINE Alu -16 297 1 307 130 157 70 chr11 71523979 71524094 -79259459 - MER53 DNA DNA -35 154 30 204 40 0 0 chr11 71524199 71524224 -79259329 + (A)n Simple_repeat Simple_repeat 1 25 0 2206 172 57 31 chr11 71524334 71524715 -79258838 + L1MB7 LINE L1 5680 6077 -107 1489 155 29 97 chr11 71524715 71524844 -79258709 + AluJb SINE Alu 1 137 -175 2468 80 0 10 chr11 71524844 71525158 -79258395 + AluY SINE Alu 1 311 0 1489 155 29 97 chr11 71525158 71525337 -79258216 + AluJb SINE Alu 137 288 -24 2206 172 57 31 chr11 71525337 71525432 -79258121 + L1MB7 LINE L1 6077 6168 -16 242 116 23 0 chr11 71525771 71525814 -79257739 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 1331 141 60 114 chr11 71525814 71526113 -79257440 - AluJo SINE Alu -29 283 1 1680 276 61 103 chr11 71526392 71527352 -79256201 + L1MEc LINE L1 36 1035 -5361 1788 143 11 14 chr11 71527352 71527639 -79255914 + AluJo SINE Alu 14 299 -13 1680 276 61 103 chr11 71527639 71528301 -79255252 + L1MEc LINE L1 1035 1567 -4829 2073 143 0 7 chr11 71528301 71528609 -79254944 + AluSx SINE Alu 7 312 0 1680 276 61 103 chr11 71528609 71528913 -79254640 + L1MEc LINE L1 1567 1882 -4514 547 216 86 0 chr11 71528978 71529013 -79254540 - L1M4 LINE L1 -1348 4798 4767 7516 27 5 2 chr11 71529013 71530592 -79252961 - L1PA4 LINE L1 0 6155 4563 547 216 86 0 chr11 71530592 71530695 -79252858 - L1M4 LINE L1 -1379 4767 4648 629 172 123 0 chr11 71530695 71530817 -79252736 - AluJb SINE Alu -12 300 164 609 119 0 0 chr11 71530976 71531060 -79252493 + AluJ/FLAM SINE Alu 2 85 -227 207 100 0 0 chr11 71531068 71531098 -79252455 + (A)n Simple_repeat Simple_repeat 1 30 0 1855 117 70 11 chr11 71531295 71531568 -79251985 - AluSx SINE Alu -23 289 1 364 227 36 55 chr11 71531704 71531814 -79251739 - MIR SINE MIR -1 261 154 292 225 123 38 chr11 71531879 71532115 -79251438 + L1ME4a LINE L1 5711 5966 -155 1277 204 0 12 chr11 71532164 71532409 -79251144 - AluJb SINE Alu -70 242 1 600 273 22 93 chr11 71532410 71532540 -79251013 + L1M4 LINE L1 3912 4050 -2096 876 145 0 0 chr11 71532540 71532671 -79250882 - FLAM_C SINE Alu -2 131 1 600 273 22 93 chr11 71532671 71532819 -79250734 + L1M4 LINE L1 4050 4154 -1992 2233 118 0 3 chr11 71532819 71533115 -79250438 + AluSx SINE Alu 2 296 -16 600 273 22 93 chr11 71533115 71533245 -79250308 + L1M4 LINE L1 4154 4292 -1854 302 317 17 17 chr11 71533247 71533367 -79250186 + L1M4 LINE L1 4369 4488 -1658 559 244 30 36 chr11 71533371 71533539 -79250014 + L1M4 LINE L1 1 167 -5724 697 251 82 22 chr11 71533539 71533770 -79249783 - MLT1I LTR MaLR -146 263 19 328 267 133 7 chr11 71533890 71534040 -79249513 + L1M4 LINE L1 4281 4449 -1521 274 298 19 10 chr11 71534044 71534148 -79249405 - AluSp/q SINE Alu 0 303 199 2351 82 0 3 chr11 71534402 71534705 -79248848 - AluSg SINE Alu -8 302 1 1661 172 28 7 chr11 71534859 71535150 -79248403 + AluJo SINE Alu 1 297 -15 198 0 0 0 chr11 71535408 71535430 -79248123 + (TTA)n Simple_repeat Simple_repeat 1 22 0 870 129 0 0 chr11 71535430 71535546 -79248007 - FLAM_C SINE Alu -27 116 1 1507 205 10 14 chr11 71535554 71535842 -79247711 - AluJo SINE Alu -25 287 1 260 284 23 57 chr11 71535921 71536009 -79247544 - L2 LINE L2 -19 3253 3169 1699 86 23 55 chr11 71536308 71536565 -79246988 + AluSg SINE Alu 1 249 -61 1940 107 17 17 chr11 71536726 71537024 -79246529 + AluSg SINE Alu 2 299 -11 2450 79 0 0 chr11 71537125 71537429 -79246124 - AluY SINE Alu -2 309 6 567 139 0 0 chr11 71537443 71537529 -79246024 - MER4D LTR ERV1 -377 526 441 2021 97 0 100 chr11 71537529 71537848 -79245705 + AluSq SINE Alu 1 287 -26 225 65 0 0 chr11 71537848 71537879 -79245674 + (CATA)n Simple_repeat Simple_repeat 2 32 0 2253 119 0 3 chr11 71537896 71538199 -79245354 + AluSg SINE Alu 1 302 -8 298 226 57 19 chr11 71538199 71538305 -79245248 - L1MB7 LINE L1 -47 6137 6028 1809 106 3 68 chr11 71538314 71538636 -79244917 + AluSp SINE Alu 1 301 -12 1507 145 80 11 chr11 71538647 71538909 -79244644 + AluJb SINE Alu 11 290 -22 22 0 0 0 chr11 71538943 71538965 -79244588 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr11 71539115 71539144 -79244409 + AT_rich Low_complexity Low_complexity 1 29 0 230 0 33 0 chr11 71539396 71539426 -79244127 + (TG)n Simple_repeat Simple_repeat 2 32 0 1430 151 36 56 chr11 71539919 71540223 -79243330 - AluSx SINE Alu -14 298 1 2129 123 3 3 chr11 71540608 71540909 -79242644 + AluSx SINE Alu 1 301 -11 2260 209 108 96 chr11 71540932 71541046 -79242507 - HAL1 LINE L1 -78 2429 2318 1879 159 3 20 chr11 71541046 71541347 -79242206 - AluJo SINE Alu -16 296 1 2260 209 108 96 chr11 71541347 71541372 -79242181 - HAL1 LINE L1 -189 2318 2295 1773 161 0 40 chr11 71541372 71541525 -79242028 - AluJo SINE Alu -26 286 149 2287 110 0 10 chr11 71541525 71541835 -79241718 - AluSc SINE Alu -2 307 1 1773 161 0 40 chr11 71541835 71541979 -79241574 - AluJo SINE Alu -163 149 1 2260 209 108 96 chr11 71541979 71542799 -79240754 - HAL1 LINE L1 -212 2295 1454 2215 118 0 3 chr11 71542799 71543095 -79240458 - AluSx SINE Alu -17 295 1 2260 209 108 96 chr11 71543095 71543128 -79240425 - HAL1 LINE L1 -1053 1454 1423 228 167 50 67 chr11 71543129 71543189 -79240364 - MLT1J2 LTR MaLR 0 450 392 2057 127 3 3 chr11 71543189 71543481 -79240072 + AluSx SINE Alu 1 292 -20 510 265 165 37 chr11 71543488 71543750 -79239803 - MLT1J2 LTR MaLR -46 404 104 2449 64 0 10 chr11 71543750 71544046 -79239507 - AluY SINE Alu -12 299 7 886 227 62 39 chr11 71544415 71544675 -79238878 - MLT1C LTR MaLR 0 467 202 207 0 0 0 chr11 71544693 71544716 -79238837 + (T)n Simple_repeat Simple_repeat 1 23 0 1543 122 34 4 chr11 71544816 71545054 -79238499 - AluSx SINE Alu -66 246 2 223 150 0 150 chr11 71545067 71545088 -79238465 + (A)n Simple_repeat Simple_repeat 1 24 -44 1460 89 9 56 chr11 71545088 71545301 -79238252 + AluY SINE Alu 1 203 -108 223 150 0 150 chr11 71545301 71545359 -79238194 + (A)n Simple_repeat Simple_repeat 23 68 0 275 81 0 0 chr11 71545377 71545414 -79238139 - tRNA-Lys-AAG tRNA tRNA -39 37 1 1673 70 9 9 chr11 71545447 71545675 -79237878 - LTR7 LTR ERV1 -2 448 221 18724 81 31 22 chr11 71545676 71548350 -79235203 - HERVH LTR ERV1 -5013 2700 1 3494 58 5 7 chr11 71548352 71548801 -79234752 - LTR7 LTR ERV1 -2 448 1 2473 65 0 0 chr11 71548807 71549099 -79234454 - AluY SINE Alu -19 292 1 2300 112 0 0 chr11 71549102 71549398 -79234155 - AluSx SINE Alu -16 296 1 410 221 16 66 chr11 71549400 71549522 -79234031 - MLT1J2 LTR MaLR -330 120 5 793 208 165 21 chr11 71549536 71549772 -79233781 - HAL1 LINE L1 -1101 1406 1137 1946 256 147 46 chr11 71549774 71550515 -79233038 - HAL1 LINE L1 -1516 991 142 2245 114 0 3 chr11 71550515 71550814 -79232739 - AluSx SINE Alu -14 298 1 1946 256 147 46 chr11 71550814 71550971 -79232582 - HAL1 LINE L1 -2365 142 2 1945 176 102 7 chr11 71551008 71551428 -79232125 - MLT1C LTR MaLR -7 460 1 257 296 102 0 chr11 71551585 71551683 -79231870 + MER103 DNA DNA 1 108 -58 1173 140 0 0 chr11 71551731 71551895 -79231658 - AluSg/x SINE Alu -17 295 132 1740 184 3 7 chr11 71552109 71552402 -79231151 - AluJb SINE Alu -20 292 1 2038 131 20 13 chr11 71552457 71552763 -79230790 + AluSx SINE Alu 4 311 -1 882 191 40 35 chr11 71552864 71552988 -79230565 + MER3 DNA MER1_type 6 133 -76 2427 85 0 3 chr11 71552988 71553282 -79230271 - AluSq SINE Alu -20 293 1 882 191 40 35 chr11 71553282 71553356 -79230197 + MER3 DNA MER1_type 133 205 -4 2845 216 63 10 chr11 71553542 71554268 -79229285 + L1ME1 LINE L1 5355 6119 -47 1844 128 0 33 chr11 71554269 71554575 -79228978 + AluSg SINE Alu 1 296 -14 416 181 29 38 chr11 71555227 71555332 -79228221 - MER5B DNA MER1_type 0 178 75 1189 185 5 0 chr11 71555341 71555541 -79228012 - MLT1B LTR MaLR -2 388 188 915 165 0 57 chr11 71555587 71555763 -79227790 - FAM SINE Alu -9 166 1 730 194 29 63 chr11 71555763 71555938 -79227615 - MLT1B LTR MaLR -205 169 1 272 200 53 53 chr11 71555938 71556013 -79227540 - MER5B DNA MER1_type -103 75 1 478 280 48 30 chr11 71556542 71556710 -79226843 - MIR SINE MIR -56 206 36 2325 79 10 0 chr11 71556831 71557121 -79226432 + AluY SINE Alu 1 293 -18 340 277 101 32 chr11 71557518 71557706 -79225847 - L2 LINE L2 -2447 867 667 280 244 24 0 chr11 71558262 71558344 -79225209 - L1MC4 LINE L1 -1344 6698 6615 2293 83 24 0 chr11 71558661 71558951 -79224602 - AluY SINE Alu -14 297 1 540 214 41 28 chr11 71559382 71559527 -79224026 + MIR SINE MIR 2 148 -114 2024 120 7 23 chr11 71559935 71560234 -79223319 - AluSx SINE Alu -18 294 1 1058 246 198 52 chr11 71560376 71560936 -79222617 + HAL1 LINE L1 350 991 -1516 793 208 165 21 chr11 71560938 71561174 -79222379 + HAL1 LINE L1 1137 1406 -1101 757 229 123 95 chr11 71561188 71561312 -79222241 + MLT1J2 LTR MaLR 5 124 -326 2300 112 0 0 chr11 71561312 71561608 -79221945 + AluSx SINE Alu 1 296 -16 2553 60 0 0 chr11 71561611 71561910 -79221643 + AluY SINE Alu 1 299 -12 757 229 123 95 chr11 71561910 71562170 -79221383 + MLT1J2 LTR MaLR 125 404 -46 1988 134 3 7 chr11 71562177 71562469 -79221084 - AluSx SINE Alu -20 292 2 512 325 0 60 chr11 71562700 71562802 -79220751 - MIR3 SINE MIR -5 203 96 1613 71 5 0 chr11 71562802 71562998 -79220555 + AluSp SINE Alu 1 197 -116 1504 58 0 0 chr11 71562997 71563170 -79220383 + AluSp SINE Alu 128 300 -13 512 325 0 60 chr11 71562998 71563169 -79220384 - MIR3 SINE MIR -112 96 116 2465 83 3 3 chr11 71563169 71563482 -79220071 + AluSp SINE Alu 1 313 0 512 325 0 60 chr11 71563482 71563579 -79219974 - MIR3 SINE MIR -91 117 16 378 208 182 37 chr11 71563633 71563902 -79219651 + L1ME4a LINE L1 5598 5905 -216 28 29 0 0 chr11 71563927 71563962 -79219591 + AT_rich Low_complexity Low_complexity 1 35 0 2476 57 0 10 chr11 71564008 71564309 -79219244 + AluY SINE Alu 1 298 -13 2222 108 3 3 chr11 71564409 71564716 -79218837 - AluSx SINE Alu -5 307 1 1906 174 6 19 chr11 71564796 71565112 -79218441 + AluJo SINE Alu 1 312 0 185 211 173 0 chr11 71565411 71565463 -79218090 + MIR SINE MIR 81 141 -121 257 254 0 15 chr11 71565532 71565599 -79217954 + MIR SINE MIR 160 225 -37 494 268 57 96 chr11 71565720 71565821 -79217732 + MIR SINE MIR 45 148 -114 2296 85 0 3 chr11 71565821 71566114 -79217439 + AluSq SINE Alu 1 292 -21 494 268 57 96 chr11 71566114 71566240 -79217313 + MIR SINE MIR 148 262 0 2466 69 3 7 chr11 71566387 71566692 -79216861 - AluSg SINE Alu -6 304 1 189 337 11 34 chr11 71566851 71566940 -79216613 + L2 LINE L2 2688 2774 -540 813 171 136 0 chr11 71566950 71567090 -79216463 + FRAM SINE Alu 1 159 -7 236 286 174 73 chr11 71567112 71567207 -79216346 + L2 LINE L2 2932 3016 -256 1507 141 67 32 chr11 71567207 71567491 -79216062 + AluJb SINE Alu 1 294 -18 236 286 174 73 chr11 71567491 71567654 -79215899 + L2 LINE L2 3016 3216 -56 185 263 0 0 chr11 71568274 71568312 -79215241 - MIR SINE MIR -7 255 218 950 201 34 10 chr11 71568319 71568528 -79215025 - MLT1A1 LTR MaLR 0 365 152 2065 137 0 3 chr11 71568531 71568830 -79214723 - AluSq SINE Alu -15 298 1 274 292 29 85 chr11 71568849 71569028 -79214525 - MIR3 SINE MIR -62 146 12 2005 149 0 10 chr11 71569730 71570031 -79213522 + AluJb SINE Alu 5 302 -10 750 203 0 23 chr11 71570092 71570225 -79213328 - FLAM_C SINE Alu -3 130 1 2291 111 0 0 chr11 71570234 71570531 -79213022 - AluSx SINE Alu -15 297 1 1968 158 0 10 chr11 71570741 71571039 -79212514 - AluSx SINE Alu -17 295 1 708 241 161 20 chr11 71571175 71571374 -79212179 - MIR SINE MIR -32 230 4 2092 145 7 0 chr11 71571549 71571852 -79211701 + AluJb SINE Alu 1 305 -7 222 368 60 0 chr11 71572300 71572417 -79211136 - MIR SINE MIR -102 160 37 2305 110 0 3 chr11 71572550 71572859 -79210694 - AluSq SINE Alu -5 308 1 268 290 29 90 chr11 71572878 71573058 -79210495 - MIR3 SINE MIR -62 146 12 237 209 88 66 chr11 71573347 71573438 -79210115 - Charlie6 DNA MER1_type -1430 2070 1978 1918 154 0 10 chr11 71573760 71574052 -79209501 + AluJb SINE Alu 5 293 -19 195 42 0 0 chr11 71574157 71574181 -79209372 + (A)n Simple_repeat Simple_repeat 1 24 0 2225 168 61 36 chr11 71574291 71574672 -79208881 + L1MB7 LINE L1 5680 6077 -107 1470 155 29 97 chr11 71574672 71574801 -79208752 + AluJb SINE Alu 1 137 -175 2446 80 0 10 chr11 71574801 71575115 -79208438 + AluY SINE Alu 1 311 0 1470 155 29 97 chr11 71575115 71575294 -79208259 + AluJb SINE Alu 137 288 -24 2225 168 61 36 chr11 71575294 71575389 -79208164 + L1MB7 LINE L1 6077 6168 -16 242 116 23 0 chr11 71575728 71575771 -79207782 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 1319 141 60 114 chr11 71575771 71576070 -79207483 - AluJo SINE Alu -29 283 1 866 336 24 12 chr11 71576349 71576768 -79206785 + L1MEc LINE L1 778 1201 -5937 267 217 113 66 chr11 71577138 71577308 -79206245 + L1MEc LINE L1 1362 1585 -5362 1639 163 61 4 chr11 71577309 71577586 -79205967 + AluJb SINE Alu 14 306 -6 240 29 57 0 chr11 71577592 71577627 -79205926 - L1M2 LINE L1 -498 5802 5766 2395 114 28 23 chr11 71577628 71578024 -79205529 + L1MA7 LINE L1 5892 6289 -2 2170 123 19 10 chr11 71579050 71579358 -79204195 + AluSx SINE Alu 1 311 -1 1234 156 78 104 chr11 71579498 71579660 -79203893 - AluJo SINE Alu -12 300 148 2198 83 24 10 chr11 71579660 71579949 -79203604 - AluSc SINE Alu -16 293 1 1234 156 78 104 chr11 71579949 71580094 -79203459 - AluJo SINE Alu -164 148 1 843 186 0 0 chr11 71580796 71580925 -79202628 + FLAM_C SINE Alu 1 129 -4 2146 120 14 0 chr11 71580937 71581221 -79202332 - AluSx SINE Alu -24 288 1 244 378 45 13 chr11 71581900 71582056 -79201497 - L2 LINE L2 -427 2887 2727 1986 132 0 0 chr11 71582152 71582432 -79201121 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr11 71582438 71582458 -79201095 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 372 315 72 27 chr11 71582464 71582756 -79200797 + L1M4 LINE L1 4679 4983 -1163 23 0 0 0 chr11 71582827 71582850 -79200703 + AT_rich Low_complexity Low_complexity 1 23 0 2278 89 27 0 chr11 71582877 71583170 -79200383 + AluSx SINE Alu 1 301 -11 1767 228 106 49 chr11 71583207 71583552 -79200001 + L1M4 LINE L1 3043 3367 -2779 1629 147 75 0 chr11 71583552 71583817 -79199736 + AluJb SINE Alu 1 285 -27 1767 228 106 49 chr11 71583817 71584160 -79199393 + L1M4 LINE L1 3367 3770 -2376 1863 124 0 4 chr11 71584160 71584419 -79199134 - AluSx SINE Alu -54 258 1 1187 191 0 9 chr11 71584423 71584638 -79198915 - AluJo SINE Alu -18 294 82 321 141 51 26 chr11 71584651 71584729 -79198824 + L1M4 LINE L1 4309 4388 -1758 1959 107 74 3 chr11 71584737 71585035 -79198518 - Tigger1 DNA MER2_type -709 1709 1391 1014 68 0 0 chr11 71585454 71585572 -79197981 - AluY SINE Alu -193 118 1 1048 120 0 0 chr11 71585605 71585738 -79197815 + FLAM_C SINE Alu 1 133 0 196 362 0 0 chr11 71585754 71585823 -79197730 - L2 LINE L2 -1880 1434 1366 558 124 4 59 chr11 71586177 71586193 -79197360 - L1P4 LINE L1 -706 5459 5444 2101 124 0 0 chr11 71586193 71586483 -79197070 - AluSx SINE Alu -22 290 1 558 124 4 59 chr11 71586483 71586587 -79196966 - L1P4 LINE L1 -721 5444 5343 1164 210 38 116 chr11 71586587 71586860 -79196693 - MLT1B LTR MaLR 0 390 97 2379 65 0 17 chr11 71586860 71587152 -79196401 + AluY SINE Alu 1 287 -24 300 70 0 0 chr11 71587155 71587198 -79196355 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1164 210 38 116 chr11 71587198 71587316 -79196237 - MLT1B LTR MaLR -295 95 26 1044 176 59 5 chr11 71587468 71587690 -79195863 - L1M4 LINE L1 -944 5202 4969 219 36 0 0 chr11 71588221 71588249 -79195304 + (A)n Simple_repeat Simple_repeat 1 28 0 229 302 0 0 chr11 71588434 71588487 -79195066 + MIR SINE MIR 113 165 -97 1816 196 0 3 chr11 71588813 71589125 -79194428 + AluJb SINE Alu 1 311 -1 209 288 0 0 chr11 71589586 71589652 -79193901 + (TAAA)n Simple_repeat Simple_repeat 1 66 0 23 33 0 0 chr11 71589850 71589880 -79193673 + AT_rich Low_complexity Low_complexity 1 30 0 191 338 33 33 chr11 71590080 71590231 -79193322 - L2 LINE L2 -1000 2314 2164 2352 110 0 0 chr11 71591088 71591397 -79192156 + AluSq SINE Alu 1 309 -4 1386 167 78 35 chr11 71591924 71592206 -79191347 - AluJb SINE Alu -18 294 1 2185 110 0 13 chr11 71592216 71592526 -79191027 - AluY SINE Alu -5 306 1 811 246 54 20 chr11 71592591 71592794 -79190759 + MIR SINE MIR 14 223 -39 335 275 136 97 chr11 71592822 71593080 -79190473 + L2 LINE L2 2969 3236 -36 215 324 205 26 chr11 71593119 71593431 -79190122 - L2 LINE L2 -1492 1822 1455 821 256 141 0 chr11 71593714 71593941 -79189612 - MIR SINE MIR -1 261 3 339 275 107 21 chr11 71593945 71594109 -79189444 + MIR SINE MIR 4 145 -63 2255 84 13 10 chr11 71594292 71594590 -79188963 - AluSq SINE Alu -14 299 1 2190 108 0 0 chr11 71594790 71595076 -79188477 + AluSx SINE Alu 1 286 -26 209 164 60 172 chr11 71595151 71595267 -79188286 - MIR3 SINE MIR -6 202 100 859 200 5 67 chr11 71596315 71596525 -79187028 - AluSx SINE Alu -115 197 1 2215 92 0 3 chr11 71596720 71597013 -79186540 + AluY SINE Alu 1 292 -19 1063 136 0 7 chr11 71597021 71597176 -79186377 + AluSc SINE Alu 134 287 -22 1820 163 24 0 chr11 71597396 71597690 -79185863 - AluJb SINE Alu -11 301 1 913 150 0 7 chr11 71597694 71597847 -79185706 + L1MB8 LINE L1 6027 6178 0 293 319 98 34 chr11 71597855 71598059 -79185494 - L2 LINE L2 -874 2440 2224 410 305 51 0 chr11 71598110 71598228 -79185325 + MIR SINE MIR 50 173 -89 2100 117 41 0 chr11 71598417 71598708 -79184845 + AluSx SINE Alu 1 303 -9 287 260 226 0 chr11 71598976 71599122 -79184431 - L2 LINE L2 -159 3154 2976 2438 88 3 0 chr11 71599220 71599528 -79184025 + AluSp SINE Alu 1 309 -4 386 285 109 58 chr11 71600043 71600183 -79183370 + L1MEd LINE L1 683 814 -5317 1555 179 45 7 chr11 71600183 71600474 -79183079 + AluJo SINE Alu 1 302 -10 386 285 109 58 chr11 71600474 71600872 -79182681 + L1MEd LINE L1 814 1190 -4941 195 42 0 0 chr11 71600872 71600896 -79182657 + (TG)n Simple_repeat Simple_repeat 1 24 0 1712 31 5 0 chr11 71600896 71601091 -79182462 - AluY SINE Alu -33 278 83 386 285 109 58 chr11 71601091 71601330 -79182223 + L1MEd LINE L1 1189 1391 -4740 1196 128 15 46 chr11 71601645 71601840 -79181713 - AluJo SINE Alu -22 290 102 1250 259 148 5 chr11 71601847 71602287 -79181266 + L1MEc LINE L1 1641 2143 -4578 3109 109 62 2 chr11 71602329 71602768 -79180785 - MER4C LTR ERV1 0 465 1 335 188 59 47 chr11 71602815 71602900 -79180653 - L1MEc LINE L1 -5126 1270 1185 927 179 13 0 chr11 71602903 71603054 -79180499 - FRAM SINE Alu -30 146 1 1991 110 0 75 chr11 71603103 71603421 -79180132 - AluSx SINE Alu -18 294 1 1083 177 79 12 chr11 71603468 71603722 -79179831 + L1MEc LINE L1 2197 2467 -4254 882 170 0 20 chr11 71603725 71603872 -79179681 + FRAM SINE Alu 3 146 -30 343 230 100 19 chr11 71603896 71604064 -79179489 + L1MEc LINE L1 2385 2617 -3963 2512 52 0 0 chr11 71604115 71604405 -79179148 - AluY SINE Alu -21 290 1 1291 149 31 45 chr11 71604670 71604892 -79178661 + MER20 DNA MER1_type 1 219 0 2234 115 0 3 chr11 71605382 71605677 -79177876 + AluSc SINE Alu 1 294 -15 2044 118 0 34 chr11 71606171 71606494 -79177059 - AluSx SINE Alu 0 312 1 735 285 45 14 chr11 71607431 71607652 -79175901 + MIR SINE MIR 5 232 -30 403 189 131 49 chr11 71608411 71608533 -79175020 - MER5B DNA MER1_type 0 178 47 1250 161 40 70 chr11 71608533 71608806 -79174747 - AluJo SINE Alu -15 297 33 211 119 15 194 chr11 71608808 71608832 -79174721 + MER5B DNA MER1_type 119 146 -32 1935 156 3 0 chr11 71608832 71609145 -79174408 + AluSx SINE Alu 1 314 0 211 119 15 194 chr11 71609145 71609185 -79174368 + MER5B DNA MER1_type 146 173 -5 270 0 0 0 chr11 71609379 71609409 -79174144 + (ATG)n Simple_repeat Simple_repeat 2 31 0 2296 95 0 0 chr11 71609409 71609693 -79173860 - AluSg SINE Alu -26 284 1 650 63 13 0 chr11 71609718 71609797 -79173756 - AluJ/FLAM SINE Alu -226 86 7 440 306 19 13 chr11 71610512 71610669 -79172884 + MIR3 SINE MIR 36 193 -15 1479 164 18 36 chr11 71611444 71611578 -79171975 + AluJo SINE Alu 1 129 -183 2215 98 0 13 chr11 71611578 71611885 -79171668 + AluSq SINE Alu 3 305 -8 1479 164 18 36 chr11 71611885 71612024 -79171529 + AluJo SINE Alu 129 269 -43 218 271 29 31 chr11 71612029 71612178 -79171375 - MIR SINE MIR -50 212 36 2246 45 45 0 chr11 71613244 71613511 -79170042 - AluY SINE Alu -12 299 21 22 0 0 0 chr11 71614331 71614353 -79169200 + AT_rich Low_complexity Low_complexity 1 22 0 1865 161 21 0 chr11 71614679 71614970 -79168583 + AluJb SINE Alu 1 297 -15 2233 105 7 0 chr11 71614977 71615272 -79168281 + AluSx SINE Alu 5 301 -11 1007 94 0 0 chr11 71615275 71615402 -79168151 - AluJo/FLAM SINE Alu -185 127 1 3858 159 64 23 chr11 71615407 71615463 -79168090 + L1MB7 LINE L1 5271 5323 -861 2193 87 28 7 chr11 71615463 71615752 -79167801 + AluY SINE Alu 1 295 -16 3858 159 64 23 chr11 71615752 71616550 -79167003 + L1MB7 LINE L1 5323 6160 -24 1146 177 0 0 chr11 71617127 71617302 -79166251 + FAM SINE Alu 1 175 0 185 225 84 42 chr11 71617425 71617496 -79166057 - MIR3 SINE MIR -41 167 94 455 309 48 24 chr11 71617670 71617838 -79165715 + MIR SINE MIR 17 188 -74 2001 149 0 3 chr11 71618012 71618308 -79165245 - AluSx SINE Alu -17 295 1 406 202 54 55 chr11 71618484 71618635 -79164918 + MLT1C LTR MaLR 1 150 -250 2248 86 0 4 chr11 71618645 71618925 -79164628 + AluSx SINE Alu 21 299 -13 208 181 60 172 chr11 71619993 71620109 -79163444 + MIR3 SINE MIR 100 202 -6 2249 119 0 0 chr11 71620168 71620470 -79163083 - AluSx SINE Alu -10 302 1 2345 84 14 0 chr11 71620669 71620966 -79162587 + AluSq SINE Alu 1 301 -12 340 275 107 21 chr11 71621149 71621313 -79162240 - MIR SINE MIR -63 145 4 768 251 141 0 chr11 71621317 71621544 -79162009 + MIR SINE MIR 3 261 -1 267 324 205 26 chr11 71621828 71622140 -79161413 + L2 LINE L2 1455 1822 -1492 363 254 127 21 chr11 71622153 71622295 -79161258 - L2 LINE L2 -4 3268 3112 188 264 94 0 chr11 71622384 71622437 -79161116 - L2 LINE L2 -246 3026 2969 826 246 54 20 chr11 71622465 71622668 -79160885 - MIR SINE MIR -39 223 14 2314 98 0 22 chr11 71622733 71623051 -79160502 + AluY SINE Alu 1 311 0 1378 184 13 35 chr11 71623057 71623373 -79160180 + AluSx SINE Alu 3 311 -1 1514 289 80 42 chr11 71623382 71624073 -79159480 - L2 LINE L2 -411 2903 2187 1546 130 0 5 chr11 71624157 71624365 -79159188 + AluSg/x SINE Alu 89 295 -17 783 223 134 3 chr11 71624433 71624716 -79158837 + MER33 DNA MER1_type 5 324 0 2250 81 10 29 chr11 71624766 71625073 -79158480 + AluSq SINE Alu 1 301 -12 1939 134 38 10 chr11 71625159 71625449 -79158104 + AluJb SINE Alu 1 298 -14 959 280 52 47 chr11 71625580 71625702 -79157851 + L1ME LINE L1 5260 5380 -790 1393 160 75 85 chr11 71625702 71625996 -79157557 + AluJo SINE Alu 1 291 -11 2223 113 10 0 chr11 71625998 71626290 -79157263 + AluSx SINE Alu 3 297 -15 2264 107 0 10 chr11 71626296 71626596 -79156957 + AluSg SINE Alu 7 303 -7 959 280 52 47 chr11 71626596 71626999 -79156554 + L1ME LINE L1 5384 5737 -433 338 223 126 80 chr11 71627046 71627221 -79156332 + L1MC5 LINE L1 7481 7663 -298 1644 178 10 17 chr11 71627239 71627531 -79156022 + AluJb SINE Alu 1 290 -22 2245 113 7 0 chr11 71627548 71627858 -79155695 + AluSx SINE Alu 1 312 0 2388 71 3 0 chr11 71628123 71628420 -79155133 - AluSg SINE Alu -11 299 2 746 208 45 11 chr11 71631240 71631418 -79152135 - MER3 DNA MER1_type -25 184 1 451 212 6 103 chr11 71631735 71631900 -79151653 + MIR SINE MIR 67 215 -47 2319 100 7 7 chr11 71632260 71632561 -79150992 + AluSx SINE Alu 1 301 -11 2278 92 6 16 chr11 71632603 71632917 -79150636 + AluY SINE Alu 1 311 0 21 0 0 0 chr11 71632930 71632951 -79150602 + AT_rich Low_complexity Low_complexity 1 21 0 2151 126 3 7 chr11 71633373 71633674 -79149879 + AluSx SINE Alu 3 302 -10 2223 91 3 26 chr11 71634335 71634643 -79148910 + AluSq SINE Alu 1 301 -12 621 91 23 0 chr11 71634654 71634742 -79148811 + AluJ/FLAM SINE Alu 11 100 -212 2298 84 0 3 chr11 71634871 71635157 -79148396 - AluSx SINE Alu -7 305 21 406 202 54 55 chr11 71635167 71635318 -79148235 - MLT1C LTR MaLR -250 140 1 2121 139 0 0 chr11 71635494 71635789 -79147764 + AluSx SINE Alu 1 295 -17 455 309 48 24 chr11 71635963 71636131 -79147422 - MIR SINE MIR -74 188 17 185 225 84 42 chr11 71636305 71636376 -79147177 + MIR3 SINE MIR 94 167 -41 1146 177 0 0 chr11 71636498 71636673 -79146880 - FAM SINE Alu 0 175 1 3855 159 67 28 chr11 71637249 71638048 -79145505 - L1MB7 LINE L1 -24 6160 5324 2228 87 28 3 chr11 71638048 71638336 -79145217 - AluY SINE Alu -16 295 1 3855 159 67 28 chr11 71638336 71638393 -79145160 - L1MB7 LINE L1 -860 5324 5271 972 94 0 8 chr11 71638398 71638526 -79145027 + AluJo/FLAM SINE Alu 1 127 -185 2177 130 0 0 chr11 71638529 71638830 -79144723 - AluSg SINE Alu -9 301 1 280 152 108 120 chr11 71638847 71638953 -79144600 - L1MB7 LINE L1 -864 5282 5176 2359 98 0 3 chr11 71638953 71639258 -79144295 - AluY SINE Alu -7 304 1 280 152 108 120 chr11 71639258 71639270 -79144283 - L1MB7 LINE L1 -970 5176 5165 2381 101 3 0 chr11 71639270 71639576 -79143977 - AluSx SINE Alu -5 307 1 280 152 108 120 chr11 71639576 71639614 -79143939 - L1MB7 LINE L1 -981 5165 5127 2638 43 0 3 chr11 71640557 71640862 -79142691 - AluY SINE Alu -7 304 1 947 224 0 15 chr11 71641033 71641229 -79142324 - MIR SINE MIR -34 228 36 193 295 285 15 chr11 71642243 71642847 -79140706 + L2 LINE L2 1568 2334 -980 207 0 0 0 chr11 71642943 71642966 -79140587 + (T)n Simple_repeat Simple_repeat 1 23 0 311 241 71 71 chr11 71643776 71643888 -79139665 + MIR3 SINE MIR 83 171 -37 1762 123 12 0 chr11 71646545 71646789 -79136764 + AluSx SINE Alu 58 304 -8 290 286 218 0 chr11 71646913 71647046 -79136507 + MIR SINE MIR 35 196 -66 791 103 44 29 chr11 71647051 71647187 -79136366 + MLT1A1 LTR MaLR 1 138 -227 1423 92 5 0 chr11 71647187 71647372 -79136181 - AluSp SINE Alu -3 310 125 284 0 0 27 chr11 71647373 71647410 -79136143 + (TTA)n Simple_repeat Simple_repeat 3 38 0 7468 30 5 2 chr11 71647410 71648980 -79134573 - L1PA4 LINE L1 -18 6137 4563 414 204 117 0 chr11 71648980 71649083 -79134470 - L1MB7 LINE L1 -1384 4762 4648 649 172 123 0 chr11 71649083 71649205 -79134348 - AluJb SINE Alu -12 300 164 578 115 0 23 chr11 71649361 71649448 -79134105 + AluJ/FLAM SINE Alu 1 85 -227 357 311 108 58 chr11 71649575 71649680 -79133873 + L1ME4a LINE L1 5456 5554 -567 1876 117 70 11 chr11 71649680 71649953 -79133600 - AluSx SINE Alu -23 289 1 357 311 108 58 chr11 71649953 71650088 -79133465 + L1ME4a LINE L1 5554 5708 -413 403 227 36 55 chr11 71650089 71650199 -79133354 - MIR SINE MIR -1 261 154 225 229 123 38 chr11 71650263 71650499 -79133054 + L1ME4a LINE L1 5711 5966 -155 1306 204 0 12 chr11 71650548 71650793 -79132760 - AluJb SINE Alu -70 242 1 540 278 22 93 chr11 71650794 71650924 -79132629 + L1 LINE L1 3912 4050 -2096 898 145 0 0 chr11 71650924 71651055 -79132498 - FLAM_C SINE Alu -2 131 1 540 278 22 93 chr11 71651055 71651203 -79132350 + L1 LINE L1 4050 4154 -1992 2293 119 0 0 chr11 71651203 71651498 -79132055 + AluSx SINE Alu 2 296 -16 540 278 22 93 chr11 71651498 71651628 -79131925 + L1 LINE L1 4154 4292 -1854 316 313 17 35 chr11 71651630 71651745 -79131808 + L1 LINE L1 4369 4481 -1665 529 244 30 36 chr11 71651754 71651922 -79131631 + L1M4 LINE L1 1 167 -5724 640 255 82 22 chr11 71651922 71652153 -79131400 - MLT1I LTR MaLR -146 263 19 427 267 133 7 chr11 71652273 71652423 -79131130 + L1M4 LINE L1 4281 4449 -1521 198 0 0 0 chr11 71652425 71652447 -79131106 + (T)n Simple_repeat Simple_repeat 1 22 0 337 303 240 0 chr11 71653205 71653380 -79130173 + MIR SINE MIR 3 219 -43 250 203 214 12 chr11 71656549 71656657 -79126896 + MIR3 SINE MIR 2 123 -106 210 250 0 29 chr11 71658232 71658300 -79125253 + G-rich Low_complexity Low_complexity 1 66 0 344 275 70 28 chr11 71660265 71660407 -79123146 + L2 LINE L2 3165 3312 -1 1743 127 82 0 chr11 71660410 71660677 -79122876 - AluSx SINE Alu -21 291 3 224 175 0 88 chr11 71660763 71660820 -79122733 - MIR SINE MIR -59 149 98 197 328 31 0 chr11 71660932 71660996 -79122557 - MIR SINE MIR -150 112 47 2326 92 13 10 chr11 71661414 71661717 -79121836 - AluSx SINE Alu -8 304 1 313 332 114 15 chr11 71661786 71661988 -79121565 - L1MEc LINE L1 -5422 974 753 2093 145 3 0 chr11 71662475 71662771 -79120782 + AluSx SINE Alu 1 297 -15 25 51 0 0 chr11 71662804 71662843 -79120710 + AT_rich Low_complexity Low_complexity 1 39 0 227 368 60 0 chr11 71663135 71663252 -79120301 - MIR SINE MIR -102 160 37 2483 94 0 0 chr11 71663385 71663692 -79119861 - AluSq SINE Alu -6 307 1 1111 90 0 0 chr11 71663881 71664014 -79119539 + AluSq/x SINE Alu 1 133 -180 1872 142 0 43 chr11 71664191 71664328 -79119225 + AluSp SINE Alu 1 142 -171 4847 37 0 0 chr11 71664328 71664894 -79118659 + L1PA4 LINE L1 5572 6180 0 388 0 0 0 chr11 71664894 71664937 -79118616 + (TAA)n Simple_repeat Simple_repeat 3 180 0 1872 142 0 43 chr11 71664937 71665122 -79118431 + AluSp SINE Alu 142 310 -3 791 103 44 29 chr11 71665122 71665258 -79118295 - MLT1A1 LTR MaLR -227 138 1 251 293 218 0 chr11 71665263 71665396 -79118157 - MIR SINE MIR -66 196 35 202 288 54 36 chr11 71665486 71665518 -79118035 + MIR SINE MIR 31 61 -147 2170 113 13 0 chr11 71665518 71665819 -79117734 - AluSx SINE Alu -7 305 1 202 288 54 36 chr11 71665819 71665897 -79117656 + MIR SINE MIR 61 143 -65 1333 65 0 6 chr11 71666160 71666328 -79117225 - AluSp SINE Alu -18 295 129 1557 71 5 0 chr11 71666328 71666524 -79117029 - AluSp SINE Alu -116 197 1 2376 103 0 0 chr11 71666857 71667169 -79116384 + AluSx SINE Alu 1 312 0 24 77 0 0 chr11 71667355 71667407 -79116146 + GC_rich Low_complexity Low_complexity 1 52 0 25 31 0 0 chr11 71667514 71667546 -79116007 + GC_rich Low_complexity Low_complexity 1 32 0 2010 110 20 0 chr11 71672038 71672330 -79111223 + AluSq SINE Alu 1 298 -15 345 342 44 9 chr11 71672330 71672444 -79111109 + MER5A DNA MER1_type 44 161 -28 204 40 0 0 chr11 71673504 71673529 -79110024 + (TTTCC)n Simple_repeat Simple_repeat 4 28 0 2098 117 0 7 chr11 71676075 71676365 -79107188 + AluSg SINE Alu 1 288 -22 212 317 100 17 chr11 71676559 71676679 -79106874 - MIR SINE MIR -111 151 22 358 403 65 10 chr11 71677096 71677406 -79106147 + L1MC4a LINE L1 5602 5928 -1880 252 305 62 22 chr11 71677414 71677550 -79106003 + MIR SINE MIR 1 147 -61 607 195 124 0 chr11 71681344 71681457 -79102096 - FLAM_A SINE Alu -6 127 1 1686 59 0 32 chr11 71681495 71681714 -79101839 + AluY SINE Alu 83 294 -17 2034 119 10 3 chr11 71681720 71682014 -79101539 + AluSx SINE Alu 1 296 -16 1708 173 18 0 chr11 71682027 71682311 -79101242 + AluSx SINE Alu 1 289 -23 28 0 0 0 chr11 71682311 71682339 -79101214 + AT_rich Low_complexity Low_complexity 1 28 0 408 254 50 72 chr11 71682339 71682551 -79101002 + L1MC5 LINE L1 5767 7751 -158 2072 118 0 30 chr11 71682739 71682914 -79100639 - AluSq SINE Alu -18 295 131 2398 93 0 0 chr11 71682914 71683226 -79100327 - AluSx SINE Alu 0 312 1 2072 118 0 30 chr11 71683226 71683354 -79100199 - AluSq SINE Alu -182 131 1 282 239 23 23 chr11 71683490 71683578 -79099975 + GA-rich Low_complexity Low_complexity 2 89 0 622 321 71 22 chr11 71683621 71683985 -79099568 - L2 LINE L2 -34 3279 2898 2004 228 145 10 chr11 71684792 71685420 -79098133 + L1MC4 LINE L1 7330 8042 0 2191 121 0 0 chr11 71686070 71686375 -79097178 + AluSx SINE Alu 1 305 -7 1117 84 0 13 chr11 71686375 71686529 -79097024 + AluY SINE Alu 2 153 -158 585 287 143 0 chr11 71686529 71686801 -79096752 + L1ME4a LINE L1 5609 5919 -202 253 287 50 20 chr11 71687890 71687991 -79095562 + MIR SINE MIR 107 210 -52 182 315 27 0 chr11 71690550 71690623 -79092930 - L2 LINE L2 -7 3265 3191 199 284 184 28 chr11 71690635 71690776 -79092777 - MIR SINE MIR -20 242 80 684 178 11 92 chr11 71691968 71692022 -79091531 - AluJo SINE Alu -125 187 130 1920 109 77 0 chr11 71692022 71692296 -79091257 - AluSq SINE Alu -18 295 1 2301 79 3 7 chr11 71692298 71692602 -79090951 - AluSg SINE Alu -7 303 1 684 178 11 92 chr11 71692602 71692718 -79090835 - AluJo SINE Alu -183 129 28 2716 13 3 0 chr11 71692983 71693289 -79090264 + AluYb8 SINE Alu 1 307 -11 225 0 0 0 chr11 71693297 71693322 -79090231 + (T)n Simple_repeat Simple_repeat 1 25 0 2349 92 0 0 chr11 71693803 71694106 -79089447 + AluSq SINE Alu 1 303 -10 193 364 53 8 chr11 71694393 71694525 -79089028 + L2 LINE L2 3167 3304 -9 1856 118 7 10 chr11 71694852 71695141 -79088412 + AluJb SINE Alu 18 305 -7 189 359 60 43 chr11 71695200 71695317 -79088236 + MIR SINE MIR 32 150 -58 22 94 0 0 chr11 71695571 71695635 -79087918 + GC_rich Low_complexity Low_complexity 1 64 0 346 221 52 0 chr11 71696499 71696576 -79086977 + MIR SINE MIR 81 161 -101 3747 131 73 34 chr11 71696649 71697321 -79086232 - LTR34 LTR ERV1 0 699 2 198 0 0 0 chr11 71697412 71697434 -79086119 + (TA)n Simple_repeat Simple_repeat 2 23 0 231 333 0 14 chr11 71697434 71697572 -79085981 - AluYb8 SINE Alu -1 307 172 309 200 14 0 chr11 71697672 71697742 -79085811 - L1MB3 LINE L1 -179 6004 5934 2120 93 7 3 chr11 71697777 71698067 -79085486 - AluSx SINE Alu -21 291 1 508 125 0 42 chr11 71698210 71698330 -79085223 + (GGGGA)n Simple_repeat Simple_repeat 3 117 0 273 323 154 31 chr11 71698986 71699181 -79084372 - L2 LINE L2 -468 2846 2628 236 273 0 19 chr11 71700050 71700146 -79083407 - MIR SINE MIR -59 149 97 406 281 75 27 chr11 71701206 71701230 -79082323 + L2 LINE L2 3159 3180 -133 2060 101 0 77 chr11 71701230 71701568 -79081985 - AluSx SINE Alu 0 312 1 406 281 75 27 chr11 71701568 71701689 -79081864 + L2 LINE L2 3180 3311 -2 245 286 0 0 chr11 71701688 71701744 -79081809 - MIR SINE MIR -103 105 50 * 1460 70 0 11 chr11 71701954 71702170 -79081383 + AluSq SINE Alu 109 313 0 254 234 10 62 chr11 71702171 71702251 -79081302 - MER5A DNA MER1_type -56 133 43 2147 130 0 3 chr11 71702556 71702857 -79080696 + AluSq SINE Alu 1 300 -13 299 180 0 0 chr11 71702863 71702913 -79080640 + Alu SINE Alu 1 50 -252 625 189 9 9 chr11 71703074 71703185 -79080368 + AluJo/FLAM SINE Alu 1 111 -201 2152 120 0 10 chr11 71703186 71703495 -79080058 - AluSx SINE Alu -6 306 1 1597 181 95 9 chr11 71703857 71704193 -79079360 + MLT1A1 LTR MaLR 1 365 0 405 224 0 0 chr11 71704205 71704290 -79079263 - AluSp/q SINE Alu -3 310 226 2126 111 3 16 chr11 71704315 71704622 -79078931 - AluSx SINE Alu -6 306 4 285 198 42 31 chr11 71704675 71704771 -79078782 + L1MC5 LINE L1 7830 7926 -35 665 277 33 69 chr11 71704802 71704874 -79078679 - L1ME LINE L1 -496 5674 5601 2187 92 13 10 chr11 71704874 71705177 -79078376 - AluSx SINE Alu -4 308 5 665 277 33 69 chr11 71705177 71705191 -79078362 - L1ME LINE L1 -569 5601 5588 2229 84 6 34 chr11 71705191 71705513 -79078040 - AluSp SINE Alu 0 313 1 665 277 33 69 chr11 71705513 71705878 -79077675 - L1ME LINE L1 -582 5588 5238 2222 73 0 33 chr11 71706387 71706689 -79076864 + AluSg SINE Alu 2 293 -17 483 227 34 17 chr11 71707003 71707122 -79076431 - MER63 DNA MER1_type -60 776 30 1921 246 135 38 chr11 71708372 71708694 -79074859 + HAL1 LINE L1 32 322 -2185 2207 112 0 3 chr11 71708694 71708998 -79074555 + AluSq SINE Alu 1 303 -10 1921 246 135 38 chr11 71708998 71710032 -79073521 + HAL1 LINE L1 322 1647 -860 2042 136 10 0 chr11 71710032 71710333 -79073220 - AluSx SINE Alu -8 304 1 1921 246 135 38 chr11 71710333 71710511 -79073042 + HAL1 LINE L1 1647 1806 -701 1962 84 0 11 chr11 71710870 71711163 -79072390 - AluSx SINE Alu 0 315 26 1071 178 10 10 chr11 71711269 71711477 -79072076 + AluSg/x SINE Alu 105 312 0 210 279 127 67 chr11 71711496 71711661 -79071892 + L2 LINE L2 3001 3175 -97 325 333 194 0 chr11 71711728 71711914 -79071639 - MIR SINE MIR -21 241 20 493 158 0 103 chr11 71712204 71712273 -79071280 - L1MB8 LINE L1 0 6178 6130 2176 122 0 0 chr11 71712273 71712569 -79070984 + AluSx SINE Alu 1 296 -16 493 158 0 103 chr11 71712569 71712645 -79070908 - L1MB8 LINE L1 -48 6130 6048 823 150 6 67 chr11 71712793 71712815 -79070738 - L1MB8 LINE L1 -232 5952 5930 2305 86 3 3 chr11 71712815 71713118 -79070435 - AluSp SINE Alu -10 303 1 823 150 6 67 chr11 71713118 71713275 -79070278 - L1MB8 LINE L1 -254 5930 5784 341 188 43 0 chr11 71713275 71713344 -79070209 + Tigger3(Golem) DNA MER2_type 1 72 -2957 1042 155 121 24 chr11 71713355 71713562 -79069991 - AluJo SINE Alu -32 280 54 4361 183 73 9 chr11 71713584 71714124 -79069429 - L1MB8 LINE L1 -864 5282 4778 2144 66 66 3 chr11 71714124 71714410 -79069143 - AluY SINE Alu -7 304 1 4361 183 73 9 chr11 71714410 71714945 -79068608 - L1MB8 LINE L1 -1368 4778 4138 336 276 62 92 chr11 71715138 71715417 -79068136 + LTR33 LTR ERVL 54 321 -200 2256 109 0 10 chr11 71715417 71715720 -79067833 - AluSx SINE Alu -12 300 1 336 276 62 92 chr11 71715720 71715810 -79067743 + LTR33 LTR ERVL 321 412 -109 210 275 218 7 chr11 71716305 71716447 -79067106 - MIR SINE MIR -12 250 79 34 0 0 0 chr11 71717368 71717402 -79066151 + AT_rich Low_complexity Low_complexity 1 34 0 1479 80 10 40 chr11 71717402 71717603 -79065950 + AluSq SINE Alu 1 195 -118 311 329 66 26 chr11 71718253 71718405 -79065148 + L2 LINE L2 3115 3272 0 1607 169 0 89 chr11 71718473 71718628 -79064925 + AluJb SINE Alu 6 120 -192 2413 87 7 0 chr11 71718628 71718927 -79064626 + AluSp SINE Alu 1 301 -12 1607 169 0 89 chr11 71718927 71719085 -79064468 + AluJb SINE Alu 120 291 -21 646 145 12 0 chr11 71719325 71719446 -79064107 + MLT1A1 LTR MaLR 256 364 -1 1609 188 71 65 chr11 71719784 71719871 -79063682 + MLT1C LTR MaLR 1 86 -381 2187 96 13 10 chr11 71719871 71720172 -79063381 + AluSq SINE Alu 1 302 -11 1609 188 71 65 chr11 71720172 71720548 -79063005 + MLT1C LTR MaLR 86 467 0 225 313 195 40 chr11 71720864 71721515 -79062038 - L2 LINE L2 -337 2977 2226 1067 275 129 31 chr11 71721722 71722403 -79061150 + HAL1 LINE L1 595 1342 -1165 909 236 166 5 chr11 71722483 71722856 -79060697 - MLT1D LTR MaLR -72 433 1 935 278 57 23 chr11 71722889 71723331 -79060222 + HAL1 LINE L1 1508 1964 -543 2344 85 3 0 chr11 71723456 71723750 -79059803 + AluSg SINE Alu 1 295 -15 2172 108 0 39 chr11 71724364 71724671 -79058882 - AluSx SINE Alu -17 295 1 1692 217 121 2 chr11 71724825 71725296 -79058257 - L1M4c LINE L1 -4813 1833 1307 2031 95 0 8 chr11 71725299 71725563 -79057990 - AluSc SINE Alu -7 302 41 780 150 222 0 chr11 71725563 71725743 -79057810 - L1M4c LINE L1 -5273 1269 1050 691 195 7 13 chr11 71725756 71725910 -79057643 - L1M4c LINE L1 -6374 168 16 1447 191 61 24 chr11 71726625 71726955 -79056598 - MER2 DNA MER2_type -2 342 1 2521 90 3 0 chr11 71727050 71727361 -79056192 + AluSp SINE Alu 1 312 -1 1065 224 88 18 chr11 71727397 71727727 -79055826 + L1M3 LINE L1 4935 5287 -859 941 163 0 0 chr11 71727727 71727868 -79055685 - AluJb SINE Alu -13 299 159 1534 189 7 24 chr11 71727934 71728252 -79055301 + AluJb SINE Alu 2 312 0 1733 133 53 50 chr11 71728252 71728333 -79055220 + L1M3 LINE L1 5325 5404 -779 2052 115 41 14 chr11 71728333 71728628 -79054925 + AluSx SINE Alu 1 303 -9 1733 133 53 50 chr11 71728628 71728883 -79054670 + L1M3 LINE L1 5404 5662 -521 242 170 0 75 chr11 71729020 71729073 -79054480 + MIR SINE MIR 29 77 -131 288 268 273 29 chr11 71729081 71729286 -79054267 + MIR SINE MIR 2 256 -6 2341 113 75 43 chr11 71729292 71729333 -79054220 - MSTA LTR MaLR 0 428 390 2239 117 0 22 chr11 71729333 71729469 -79054084 + AluSx SINE Alu 1 138 -174 2275 78 0 11 chr11 71729469 71729776 -79053777 + AluSg SINE Alu 1 304 0 2239 117 0 22 chr11 71729776 71729955 -79053598 + AluSx SINE Alu 138 310 -2 2341 113 75 43 chr11 71729955 71730155 -79053398 - MSTA LTR MaLR -38 390 198 1963 151 0 3 chr11 71730155 71730446 -79053107 - AluSx SINE Alu -22 290 1 2341 113 75 43 chr11 71730446 71730618 -79052935 - MSTA LTR MaLR -230 198 1 2284 100 10 10 chr11 71730669 71730970 -79052583 - AluSg SINE Alu -9 301 1 1815 160 0 0 chr11 71731113 71731375 -79052178 - AluJb SINE Alu -16 296 35 186 245 75 0 chr11 71731394 71731447 -79052106 - L3 LINE CR1 -3 1574 1518 768 197 0 0 chr11 71731471 71731603 -79051950 - FLAM_A SINE Alu -1 132 1 613 264 71 42 chr11 71731610 71731822 -79051731 - MIR SINE MIR -32 230 13 286 304 42 79 chr11 71732480 71732502 -79051051 + L2 LINE L2 2968 2989 -283 1138 207 223 15 chr11 71732502 71732830 -79050723 - MSTD LTR MaLR 0 396 1 286 304 42 79 chr11 71732830 71733021 -79050532 + L2 LINE L2 2989 3173 -99 1592 211 133 41 chr11 71733086 71733483 -79050070 - MLT1E LTR MaLR -2 591 129 1741 150 138 46 chr11 71733483 71733798 -79049755 + LTR47A LTR ERVL 1 364 -88 2318 109 0 0 chr11 71733798 71734102 -79049451 + AluSx SINE Alu 3 306 -6 1741 150 138 46 chr11 71734102 71734200 -79049353 + LTR47A LTR ERVL 364 452 0 1592 211 133 41 chr11 71734200 71734343 -79049210 - MLT1E LTR MaLR -464 129 1 374 283 28 9 chr11 71734369 71734475 -79049078 + MIR SINE MIR 43 150 -112 296 241 26 99 chr11 71734479 71734552 -79049001 - MER104 DNA Tc2 -1721 177 100 2007 132 10 19 chr11 71734552 71734862 -79048691 + AluJo SINE Alu 1 307 -5 296 241 26 99 chr11 71734862 71734979 -79048574 - MER104 DNA Tc2 -1798 100 1 1026 122 0 0 chr11 71735635 71735774 -79047779 + AluSq/x SINE Alu 1 139 -173 1979 142 6 25 chr11 71735778 71736096 -79047457 + AluSx SINE Alu 1 312 0 883 146 0 15 chr11 71736164 71736301 -79047252 + AluJo SINE Alu 1 135 -177 2201 110 3 20 chr11 71736301 71736601 -79046952 + AluSg1 SINE Alu 1 295 -14 2347 103 0 7 chr11 71737367 71737669 -79045884 + AluSx SINE Alu 1 300 -12 1221 139 0 0 chr11 71737669 71737842 -79045711 + AluSg/x SINE Alu 132 304 -6 189 0 0 0 chr11 71738565 71738586 -79044967 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 872 173 6 32 chr11 71738590 71738746 -79044807 - AluJb SINE Alu -31 281 130 1134 98 12 35 chr11 71738746 71738919 -79044634 - AluSg/x SINE Alu 0 310 142 971 171 6 0 chr11 71739067 71739231 -79044322 - AluJo/FRAM SINE Alu -12 300 136 2108 130 34 0 chr11 71739233 71739525 -79044028 - AluJb SINE Alu -10 302 1 210 301 8 73 chr11 71739582 71739705 -79043848 - MIR SINE MIR -69 139 25 1923 103 103 4 chr11 71740427 71740698 -79042855 + AluSx SINE Alu 1 298 -14 442 264 155 0 chr11 71740724 71740853 -79042700 + MIR SINE MIR 4 152 -110 217 180 80 13 chr11 71740835 71740903 -79042650 - MIR SINE MIR -13 195 109 * 226 304 0 0 chr11 71741297 71741353 -79042200 + L2 LINE L2 3166 3221 -51 2573 64 0 6 chr11 71743285 71743596 -79039957 - AluY SINE Alu -2 309 1 229 302 0 0 chr11 71743632 71743695 -79039858 - L1MC/D LINE L1 -1910 5898 5836 2351 110 0 10 chr11 71743925 71744234 -79039319 - AluSx SINE Alu -5 307 2 591 248 81 68 chr11 71744323 71744566 -79038987 - L1ME3A LINE L1 -221 5949 5700 2379 118 0 0 chr11 71744566 71744871 -79038682 - AluSx SINE Alu -6 306 2 591 248 81 68 chr11 71744871 71744950 -79038603 - L1ME3A LINE L1 -470 5700 5623 254 301 57 94 chr11 71745044 71745502 -79038051 - L1MEd LINE L1 -5581 538 98 879 127 0 60 chr11 71745515 71745665 -79037888 + FLAM_C SINE Alu 1 141 -2 2302 118 0 0 chr11 71745665 71745969 -79037584 + AluSx SINE Alu 1 304 -8 2125 123 3 0 chr11 71746507 71746813 -79036740 + AluSp SINE Alu 1 307 0 2219 109 7 3 chr11 71746923 71747226 -79036327 - AluY SINE Alu -7 304 1 2400 94 0 3 chr11 71747585 71747892 -79035661 - AluSq SINE Alu -7 306 1 1246 117 0 28 chr11 71748158 71748338 -79035215 + AluSp SINE Alu 123 297 -16 2298 137 39 0 chr11 71748339 71748726 -79034827 + L1MB7 LINE L1 5721 6122 -62 327 326 0 0 chr11 71748803 71748889 -79034664 - L1MC/D LINE L1 -327 5794 5709 183 244 0 0 chr11 71748947 71748988 -79034565 + L2 LINE L2 3265 3305 -8 7682 92 8 15 chr11 71749420 71750498 -79033055 + MER11C LTR ERVK 1 1071 0 1289 188 0 51 chr11 71750568 71750824 -79032729 + AluSx SINE Alu 1 243 -69 189 107 0 0 chr11 71750881 71750909 -79032644 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 890 173 0 0 chr11 71750942 71751081 -79032472 - FLAM_C SINE Alu -3 140 2 1435 118 0 24 chr11 71751097 71751308 -79032245 - AluSg/x SINE Alu 0 310 105 2101 133 49 65 chr11 71751408 71751514 -79032039 + L1MB3 LINE L1 5699 5805 -378 2457 71 0 3 chr11 71751514 71751810 -79031743 - AluY SINE Alu -16 295 1 2101 133 49 65 chr11 71751810 71751839 -79031714 + L1MB3 LINE L1 5805 5833 -350 2395 91 3 0 chr11 71751839 71752135 -79031418 + AluSp SINE Alu 1 297 -16 2599 50 0 7 chr11 71752136 71752437 -79031116 + AluY SINE Alu 2 300 -11 2101 133 49 65 chr11 71752437 71752749 -79030804 + L1MB3 LINE L1 5833 6143 -40 2375 77 3 13 chr11 71752749 71753048 -79030505 + AluSp SINE Alu 1 296 -17 2101 133 49 65 chr11 71753048 71753069 -79030484 + L1MB3 LINE L1 6143 6163 -20 562 198 58 0 chr11 71753093 71753214 -79030339 + MLT1A2 LTR MaLR 23 150 -215 434 171 24 0 chr11 71753218 71753300 -79030253 + AluSq SINE Alu 136 219 -94 682 186 35 28 chr11 71753329 71753474 -79030079 + MLT1A2 LTR MaLR 170 315 -59 2332 67 0 55 chr11 71753475 71753804 -79029749 + AluY SINE Alu 1 311 0 1305 107 68 5 chr11 71753813 71754018 -79029535 + AluSq SINE Alu 95 312 -1 2387 82 0 0 chr11 71754018 71754310 -79029243 + AluY SINE Alu 1 292 -19 2164 103 11 0 chr11 71754315 71754630 -79028923 + AluSx SINE Alu 1 318 0 310 182 0 15 chr11 71754630 71754696 -79028857 + MLT1A2 LTR MaLR 301 365 0 2873 16 3 0 chr11 71755823 71756136 -79027417 + AluYb8 SINE Alu 1 314 -4 1444 181 16 53 chr11 71756232 71756366 -79027187 + AluJb SINE Alu 1 138 -174 2134 103 32 3 chr11 71756366 71756648 -79026905 + AluSg SINE Alu 1 290 -20 1444 181 16 53 chr11 71756648 71756817 -79026736 + AluJb SINE Alu 138 293 -19 2841 200 77 17 chr11 71756889 71757319 -79026234 + L1ME1 LINE L1 5362 5765 -401 2103 69 94 14 chr11 71757319 71757594 -79025959 + AluY SINE Alu 1 297 -14 1537 162 70 63 chr11 71757596 71757698 -79025855 + AluJo SINE Alu 1 101 -211 2275 91 7 3 chr11 71757698 71757994 -79025559 + AluSx SINE Alu 1 297 -15 1537 162 70 63 chr11 71757994 71758029 -79025524 + AluJo SINE Alu 101 134 -178 477 0 0 0 chr11 71758029 71758082 -79025471 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 1537 162 70 63 chr11 71758082 71758245 -79025308 + AluJo SINE Alu 134 304 -8 2841 200 77 17 chr11 71758245 71758566 -79024987 + L1ME1 LINE L1 5765 6161 -5 1726 186 7 0 chr11 71758589 71758880 -79024673 + AluJb SINE Alu 17 309 -3 2354 69 0 17 chr11 71758991 71759311 -79024242 - AluSc SINE Alu 0 315 1 1968 65 102 0 chr11 71759430 71759705 -79023848 + AluSx SINE Alu 1 303 -9 26 50 0 0 chr11 71760043 71760083 -79023470 + AT_rich Low_complexity Low_complexity 1 40 0 205 234 0 43 chr11 71760806 71760853 -79022700 + MIR SINE MIR 109 153 -55 1231 101 0 30 chr11 71761489 71761625 -79021928 + AluSx SINE Alu 1 133 -179 2473 96 0 0 chr11 71761625 71761928 -79021625 + AluSc SINE Alu 1 303 -6 1231 101 0 30 chr11 71761928 71761959 -79021594 + AluSx SINE Alu 133 163 -149 2180 80 4 7 chr11 71762583 71762858 -79020695 - AluSp SINE Alu -39 274 1 429 306 22 0 chr11 71762972 71763106 -79020447 + MIR SINE MIR 105 241 -21 182 227 0 23 chr11 71763674 71763718 -79019835 - L2 LINE L2 -10 3303 3261 426 206 75 86 chr11 71763826 71764000 -79019553 + MIR SINE MIR 61 235 -27 2194 112 10 0 chr11 71764678 71764981 -79018572 + AluSq SINE Alu 1 306 -7 250 272 111 0 chr11 71765168 71765249 -79018304 - L2 LINE L2 -4 3268 3179 2351 81 7 0 chr11 71765784 71766080 -79017473 - AluSq SINE Alu -10 303 6 633 217 0 0 chr11 71766233 71766353 -79017200 + FRAM SINE Alu 40 159 -17 886 292 85 40 chr11 71766353 71766544 -79017009 + MLT1H1 LTR MaLR 53 234 -321 2082 88 71 14 chr11 71766544 71766839 -79016714 + AluSq SINE Alu 2 313 0 886 292 85 40 chr11 71766839 71767096 -79016457 + MLT1H1 LTR MaLR 234 521 -34 1359 186 29 7 chr11 71767096 71767375 -79016178 - MLT1C LTR MaLR 0 467 183 837 216 0 17 chr11 71767375 71767551 -79016002 - AluJo/FRAM SINE Alu -6 306 134 2376 70 3 0 chr11 71767551 71767852 -79015701 - AluY SINE Alu -9 302 1 2016 110 3 52 chr11 71767862 71768188 -79015365 - AluSx SINE Alu -1 311 2 1769 152 53 0 chr11 71768189 71768472 -79015081 - AluJb SINE Alu -14 298 1 2228 107 0 0 chr11 71768476 71768776 -79014777 - AluSc SINE Alu -9 300 1 725 183 98 6 chr11 71768776 71768940 -79014613 - MLT1C LTR MaLR -283 184 6 2205 97 0 7 chr11 71769179 71769489 -79014064 + AluSx SINE Alu 1 308 -4 721 259 76 0 chr11 71769892 71770077 -79013476 + MIR SINE MIR 39 237 -25 213 353 44 0 chr11 71770095 71770163 -79013390 - MIR SINE MIR -78 184 114 2023 91 0 0 chr11 71770163 71770426 -79013127 - AluSx SINE Alu -6 306 44 289 288 79 36 chr11 71770438 71770577 -79012976 + L2 LINE L2 2936 3080 -192 1488 247 98 13 chr11 71770645 71771094 -79012459 + MLT1D LTR MaLR 13 499 -6 329 258 108 8 chr11 71771117 71771237 -79012316 + MLT1J2 LTR MaLR 275 447 -3 308 286 101 8 chr11 71771254 71771373 -79012180 + L2 LINE L2 3139 3268 -4 * 319 237 25 68 chr11 71771370 71771488 -79012065 - L2 LINE L2 -246 3026 2914 189 243 27 54 chr11 71771752 71771826 -79011727 + MIR SINE MIR 111 182 -80 2181 39 0 0 chr11 71771904 71772163 -79011390 - AluY SINE Alu -51 260 2 339 250 207 14 chr11 71772762 71772902 -79010651 - MIR3 SINE MIR -21 187 21 278 323 113 5 chr11 71772997 71773163 -79010390 + MIR SINE MIR 43 222 -40 616 231 220 0 chr11 71773218 71773391 -79010162 + MIR SINE MIR 10 220 -42 300 272 53 47 chr11 71773431 71773600 -79009953 + MIR SINE MIR 81 250 -12 209 319 126 28 chr11 71774023 71774277 -79009276 - L2 LINE L2 -178 3094 2816 2064 105 17 3 chr11 71774298 71774592 -79008961 + AluSx SINE Alu 1 298 -14 909 182 47 0 chr11 71774593 71774763 -79008790 + AluSg/x SINE Alu 134 311 -1 899 272 120 12 chr11 71775639 71776158 -79007395 + L2 LINE L2 2475 3055 -258 225 216 39 0 chr11 71776158 71776209 -79007344 + AluSp SINE Alu 114 166 -137 6466 120 197 82 chr11 71776209 71777730 -79005823 + pTR5 LTR ERV1 743 2437 -1 1610 138 37 0 chr11 71777730 71777998 -79005555 + AluSx SINE Alu 24 301 -11 484 229 93 29 chr11 71778041 71778181 -79005372 + L2 LINE L2 3159 3307 -6 2177 111 3 0 chr11 71778181 71778478 -79005075 + AluSp SINE Alu 1 298 -15 1073 156 0 0 chr11 71778712 71778879 -79004674 - AluSg/x SINE Alu -11 299 133 1989 130 3 0 chr11 71779242 71779527 -79004026 + AluJb SINE Alu 1 286 -26 309 307 70 9 chr11 71779685 71779799 -79003754 + MIR SINE MIR 21 141 -67 211 222 0 37 chr11 71780577 71780631 -79002922 - L2 LINE L2 -1067 2247 2196 370 304 40 27 chr11 71781095 71781243 -79002310 - L2 LINE L2 0 3313 3164 2110 100 23 0 chr11 71782131 71782432 -79001121 + AluSx SINE Alu 1 308 -4 247 256 81 0 chr11 71784481 71784567 -78998986 - L2 LINE L2 -58 3255 3163 394 311 46 20 chr11 71785794 71785990 -78997563 + MIR SINE MIR 48 248 -14 262 319 33 27 chr11 71786122 71786282 -78997271 + MIR3 SINE MIR 1 164 -77 814 172 121 13 chr11 71786329 71786486 -78997067 + FAM SINE Alu 2 175 0 511 231 115 45 chr11 71786545 71786633 -78996920 + L1M4 LINE L1 4349 4429 -1717 2043 116 26 7 chr11 71786633 71786935 -78996618 + AluSg SINE Alu 1 308 -2 511 231 115 45 chr11 71786935 71787089 -78996464 + L1M4 LINE L1 4429 4608 -1538 793 226 6 6 chr11 71787095 71787263 -78996290 - Charlie1a DNA MER1_type -1285 170 3 1958 86 86 7 chr11 71788283 71788573 -78994980 + AluSq SINE Alu 1 313 0 2403 71 3 0 chr11 71789110 71789418 -78994135 + AluSq SINE Alu 1 309 -4 1856 157 16 7 chr11 71789633 71789939 -78993614 + AluJo SINE Alu 1 309 -3 180 0 0 0 chr11 71790021 71790041 -78993512 + (GGGA)n Simple_repeat Simple_repeat 4 23 0 202 356 14 0 chr11 71790328 71790401 -78993152 + L2 LINE L2 3235 3308 -5 799 150 0 8 chr11 71791137 71791264 -78992289 - FLAM_C SINE Alu -16 127 2 2277 74 0 0 chr11 71791552 71791857 -78991696 + AluY SINE Alu 1 305 0 1942 142 0 7 chr11 71791950 71792253 -78991300 - AluSx SINE Alu -11 301 1 840 132 0 8 chr11 71793136 71793265 -78990288 + FLAM_C SINE Alu 5 132 -11 1965 99 60 3 chr11 71793270 71793552 -78990001 - AluSx SINE Alu -14 298 1 2037 129 0 0 chr11 71794013 71794308 -78989245 + AluSx SINE Alu 1 295 -17 427 100 17 0 chr11 71794642 71794702 -78988851 + U7 snRNA snRNA 2 62 -1 1950 108 66 0 chr11 71795642 71795929 -78987624 + AluSx SINE Alu 1 306 -6 340 282 69 8 chr11 71796475 71796652 -78986901 + MIR SINE MIR 24 219 -43 1720 95 4 17 chr11 71797171 71797412 -78986141 + AluSx SINE Alu 1 238 -74 225 0 0 0 chr11 71797432 71797457 -78986096 + (A)n Simple_repeat Simple_repeat 1 25 0 2137 64 13 60 chr11 71797965 71798279 -78985274 + AluY SINE Alu 3 301 -10 2014 127 0 29 chr11 71798383 71798698 -78984855 - AluSx SINE Alu -6 306 1 243 88 0 0 chr11 71798763 71798797 -78984756 + (A)n Simple_repeat Simple_repeat 1 34 0 1999 137 3 0 chr11 71798810 71799109 -78984444 + AluSx SINE Alu 12 311 -1 835 171 0 0 chr11 71799128 71799268 -78984285 + FLAM_C SINE Alu 1 140 -3 183 129 0 0 chr11 71799305 71799336 -78984217 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1874 128 11 0 chr11 71799709 71800027 -78983526 + AluSx SINE Alu 1 321 0 282 278 45 28 chr11 71800076 71800114 -78983439 - L1ME LINE L1 -252 5869 5833 1334 192 41 17 chr11 71800114 71800264 -78983289 - AluJo SINE Alu -14 298 153 2083 113 10 3 chr11 71800264 71800566 -78982987 - AluSx SINE Alu -3 309 6 1334 192 41 17 chr11 71800566 71800584 -78982969 - AluJo SINE Alu -159 153 137 351 0 0 0 chr11 71800584 71800623 -78982930 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1334 192 41 17 chr11 71800623 71800744 -78982809 - AluJo SINE Alu -175 137 1 282 278 45 28 chr11 71800744 71800881 -78982672 - L1ME LINE L1 -288 5833 5691 1741 113 65 34 chr11 71800919 71801070 -78982483 - AluSx SINE Alu -12 300 155 231 36 0 0 chr11 71801070 71801098 -78982455 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2051 109 3 3 chr11 71801098 71801381 -78982172 - AluSp SINE Alu -30 283 1 1741 113 65 34 chr11 71801381 71801519 -78982034 - AluSx SINE Alu -156 156 1 256 325 17 0 chr11 71801836 71801956 -78981597 + L1ME LINE L1 5767 5888 -233 1856 157 3 10 chr11 71801956 71802269 -78981284 + AluJb SINE Alu 1 311 -1 763 167 0 12 chr11 71802290 71802416 -78981137 + GA-rich Low_complexity Low_complexity 1 126 -34 2627 45 0 0 chr11 71802416 71802727 -78980826 + AluY SINE Alu 1 311 0 763 167 0 12 chr11 71802727 71802762 -78980791 + GA-rich Low_complexity Low_complexity 126 160 0 326 143 0 0 chr11 71802771 71802820 -78980733 + MER66A LTR ERV1 287 335 -143 198 103 0 0 chr11 71802825 71802854 -78980699 + (A)n Simple_repeat Simple_repeat 1 29 0 2015 112 35 0 chr11 71802873 71803158 -78980395 + AluSq SINE Alu 1 295 -18 2244 92 0 3 chr11 71803165 71803460 -78980093 + AluSq SINE Alu 1 294 -19 406 113 0 16 chr11 71803477 71803539 -78980014 + MER66B LTR ERV1 288 348 -138 888 229 0 0 chr11 71803547 71803726 -78979827 + AluJo SINE Alu 120 298 -14 2388 74 0 3 chr11 71803726 71804035 -78979518 + AluY SINE Alu 1 308 -3 2196 128 38 46 chr11 71804168 71804377 -78979176 - THE1B LTR MaLR 0 364 158 2312 84 3 0 chr11 71804377 71804673 -78978880 + AluSp SINE Alu 2 298 -15 2196 128 38 46 chr11 71804673 71804830 -78978723 - THE1B LTR MaLR -206 158 1 1759 115 7 7 chr11 71804830 71805099 -78978454 + AluJb SINE Alu 31 299 -13 388 311 95 11 chr11 71805318 71805613 -78977940 - L2 LINE L2 -252 3061 2742 1367 235 86 49 chr11 71805632 71805927 -78977626 - L1ME3A LINE L1 -9 6161 5839 2007 84 18 4 chr11 71805927 71806200 -78977353 - AluSx SINE Alu -22 290 14 1367 235 86 49 chr11 71806200 71806393 -78977160 - L1ME3A LINE L1 -331 5839 5655 1535 111 172 4 chr11 71806502 71806764 -78976789 - AluSx SINE Alu -6 306 1 1326 42 178 5 chr11 71807119 71807310 -78976243 - AluY SINE Alu 0 311 88 474 259 155 5 chr11 71807798 71807991 -78975562 + MIR SINE MIR 12 233 -29 278 222 176 19 chr11 71808102 71808210 -78975343 - MIR SINE MIR -67 141 17 25 51 0 0 chr11 71808460 71808499 -78975054 + GC_rich Low_complexity Low_complexity 1 39 0 361 309 0 40 chr11 71809458 71809607 -78973946 - MIR3 SINE MIR -62 146 4 248 209 154 134 chr11 71809623 71809824 -78973729 + MIR SINE MIR 46 250 -12 278 308 197 0 chr11 71810238 71810355 -78973198 + MIR SINE MIR 8 147 -115 188 294 20 0 chr11 71810384 71810435 -78973118 - MIR SINE MIR -17 245 194 287 283 34 17 chr11 71810860 71811008 -78972545 + MIR SINE MIR 23 170 -58 388 271 37 0 chr11 71811048 71811155 -78972398 + MIR3 SINE MIR 12 122 -86 437 152 0 0 chr11 71811177 71811256 -78972297 + AluS SINE Alu 229 307 -2 302 197 78 213 chr11 71811355 71811431 -78972122 - Charlie8 DNA MER1_type -107 234 149 2330 86 3 3 chr11 71811431 71811744 -78971809 - AluSp SINE Alu 0 313 1 302 197 78 213 chr11 71811744 71811827 -78971726 - Charlie8 DNA MER1_type -192 149 117 772 177 0 0 chr11 71811827 71811951 -78971602 - FLAM_A SINE Alu -9 124 1 302 197 78 213 chr11 71811951 71812034 -78971519 - Charlie8 DNA MER1_type -224 117 24 374 261 17 25 chr11 71812162 71812281 -78971272 - MIR SINE MIR -123 139 22 2274 103 3 0 chr11 71812390 71812700 -78970853 + AluSx SINE Alu 1 311 -1 778 248 143 9 chr11 71813209 71813439 -78970114 + MIR SINE MIR 2 262 0 460 296 137 22 chr11 71813836 71814113 -78969440 + Charlie8 DNA MER1_type 2 310 -2107 766 223 27 21 chr11 71814604 71814742 -78968811 + MER53 DNA DNA 1 143 -46 1970 110 7 0 chr11 71814742 71815048 -78968505 + AluSx SINE Alu 1 308 0 766 223 27 21 chr11 71815048 71815096 -78968457 + MER53 DNA DNA 143 189 0 199 209 15 60 chr11 71815477 71815544 -78968009 - MIR SINE MIR -103 105 42 554 124 0 82 chr11 71815771 71815868 -78967685 + AluSg/x SINE Alu 207 295 -14 220 278 0 15 chr11 71816073 71816140 -78967413 - MIR SINE MIR -133 75 13 369 331 80 0 chr11 71816287 71816438 -78967115 + MIR SINE MIR 60 222 -40 631 194 21 49 chr11 71816589 71816733 -78966820 + MIR SINE MIR 108 247 -15 283 336 82 8 chr11 71817479 71817601 -78965952 - L1MC/D LINE L1 -2060 5748 5618 203 328 31 0 chr11 71817605 71817669 -78965884 - MIR SINE MIR -103 159 94 2571 80 0 3 chr11 71817790 71818104 -78965449 + AluSq SINE Alu 1 313 0 223 266 35 91 chr11 71818493 71818636 -78964917 + L2 LINE L2 3162 3296 -17 486 289 28 0 chr11 71818726 71818868 -78964685 + MIR SINE MIR 13 158 -104 772 148 140 89 chr11 71819198 71819446 -78964107 - L1MB8 LINE L1 0 6180 5929 1090 161 60 0 chr11 71819453 71819652 -78963901 + MER46A DNA MER2_type 1 211 -25 321 238 163 0 chr11 71819655 71819735 -78963818 + L2 LINE L2 3173 3265 -7 2135 120 27 3 chr11 71820169 71820469 -78963084 - AluSq SINE Alu -6 307 1 252 0 0 0 chr11 71820488 71820516 -78963037 + (T)n Simple_repeat Simple_repeat 1 28 0 285 143 0 0 chr11 71820522 71820571 -78962982 - MER66A LTR ERV1 -143 335 287 915 233 0 5 chr11 71820592 71820604 -78962949 - AluJb SINE Alu -1 311 300 2379 77 6 6 chr11 71820604 71820915 -78962638 - AluY SINE Alu 0 311 1 915 233 0 5 chr11 71820915 71821095 -78962458 - AluJb SINE Alu -12 300 120 389 113 0 16 chr11 71821103 71821165 -78962388 - MER66B LTR ERV1 -138 348 288 2375 92 0 3 chr11 71821182 71821477 -78962076 - AluSq SINE Alu -19 294 1 1138 148 0 0 chr11 71821484 71821646 -78961907 - AluSq SINE Alu -18 295 134 1636 169 20 46 chr11 71821863 71821940 -78961613 + AluJo SINE Alu 1 79 -233 2258 85 0 4 chr11 71821940 71822221 -78961332 - AluSg SINE Alu -13 297 18 1636 169 20 46 chr11 71822221 71822445 -78961108 + AluJo SINE Alu 79 294 -18 837 199 88 85 chr11 71822453 71822784 -78960769 + L1MC4 LINE L1 7708 8039 -3 2278 123 0 0 chr11 71822786 71823094 -78960459 + AluSx SINE Alu 3 310 -2 1201 216 37 75 chr11 71823117 71823352 -78960201 + L1MC5 LINE L1 7223 7466 -495 2188 111 0 33 chr11 71823352 71823658 -78959895 - AluSx SINE Alu -16 296 1 1201 216 37 75 chr11 71823658 71823905 -78959648 + L1MC5 LINE L1 7466 7688 -273 1885 145 10 30 chr11 71823905 71824072 -78959481 - AluSx SINE Alu -15 297 137 2326 96 10 0 chr11 71824072 71824365 -78959188 - AluSg SINE Alu -14 296 1 1885 145 10 30 chr11 71824365 71824500 -78959053 - AluSx SINE Alu -175 137 1 445 132 0 0 chr11 71824525 71824593 -78958960 - U3 snRNA snRNA -149 68 1 1746 170 24 0 chr11 71824642 71824930 -78958623 + AluSg SINE Alu 1 295 -15 1105 169 0 0 chr11 71824931 71825108 -78958445 + AluJb SINE Alu 135 311 -1 246 178 0 0 chr11 71825112 71825206 -78958347 + Alu SINE Alu 241 334 0 304 289 70 48 chr11 71825708 71825895 -78957658 + MIR SINE MIR 36 226 -36 913 166 139 62 chr11 71826038 71826070 -78957483 + L1MC3 LINE L1 7194 7222 -563 2343 95 0 0 chr11 71826070 71826365 -78957188 + AluSx SINE Alu 3 297 -15 913 166 139 62 chr11 71826365 71826591 -78956962 + L1MC3 LINE L1 7222 7472 -313 725 171 0 0 chr11 71826594 71826705 -78956848 + FLAM_A SINE Alu 21 131 -11 2127 122 0 0 chr11 71826726 71827014 -78956539 + AluSx SINE Alu 6 293 -19 2250 126 0 0 chr11 71827019 71827329 -78956224 + AluSx SINE Alu 1 310 -2 578 159 9 0 chr11 71827363 71827470 -78956083 + L1MC3 LINE L1 7461 7568 -217 1747 168 130 50 chr11 71827470 71827795 -78955758 + LTR32 LTR ERVL 15 312 -159 1710 150 3 65 chr11 71827795 71828102 -78955451 + AluJb SINE Alu 1 288 -24 423 0 0 0 chr11 71828106 71828153 -78955400 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1747 168 130 50 chr11 71828153 71828245 -78955308 + LTR32 LTR ERVL 314 471 0 1038 130 67 0 chr11 71828245 71828453 -78955100 + L1MC3 LINE L1 7564 7785 0 796 176 27 20 chr11 71828465 71828613 -78954940 + AluJb SINE Alu 81 229 -83 2316 87 3 0 chr11 71828652 71828940 -78954613 - AluSc SINE Alu -20 289 1 480 303 84 15 chr11 71828960 71829234 -78954319 + L1MC4a LINE L1 5293 5585 -2223 1203 134 0 0 chr11 71829247 71829418 -78954135 - AluSg SINE Alu 0 310 140 1124 116 0 0 chr11 71829469 71829616 -78953937 - AluSg SINE Alu -163 147 1 394 216 142 7 chr11 71829620 71829768 -78953785 + L1MC4a LINE L1 5658 5825 -1983 784 213 26 7 chr11 71829841 71829996 -78953557 - MIR SINE MIR -73 189 32 859 134 22 15 chr11 71830004 71830138 -78953415 + AluJb SINE Alu 1 135 -177 1823 175 0 7 chr11 71830148 71830451 -78953102 + AluJo SINE Alu 1 301 -11 408 97 0 0 chr11 71830477 71830539 -78953014 + (CA)n Simple_repeat Simple_repeat 1 62 0 235 280 28 19 chr11 71831663 71831770 -78951783 - MER112 DNA MER1_type -145 115 8 1874 125 18 11 chr11 71831972 71832274 -78951279 + AluSx SINE Alu 10 313 0 1383 168 63 84 chr11 71832753 71832899 -78950654 + MLT1B LTR MaLR 16 164 -226 2604 68 0 0 chr11 71832899 71833207 -78950346 + AluSc SINE Alu 1 308 -1 1383 168 63 84 chr11 71833207 71833441 -78950112 + MLT1B LTR MaLR 164 388 -2 521 157 0 0 chr11 71833486 71833569 -78949984 - MER45A DNA AcHobo 0 178 96 1839 144 0 21 chr11 71833569 71833762 -78949791 + AluJo SINE Alu 34 221 -91 3913 107 13 9 chr11 71833762 71834132 -78949421 + MER41A LTR ERV1 1 375 -179 2125 115 3 3 chr11 71834132 71834419 -78949134 + AluSx SINE Alu 16 302 -10 3913 107 13 9 chr11 71834419 71834600 -78948953 + MER41A LTR ERV1 375 554 0 1839 144 0 21 chr11 71834600 71834691 -78948862 + AluJo SINE Alu 221 312 0 310 218 207 0 chr11 71834708 71834795 -78948758 - MER45A DNA AcHobo -72 106 2 2039 117 4 0 chr11 71835915 71836237 -78947316 - AluSq SINE Alu 0 325 3 2354 94 0 0 chr11 71836331 71836629 -78946924 - AluSx SINE Alu -14 298 1 839 185 7 0 chr11 71836766 71836912 -78946641 - FRAM SINE Alu -13 163 17 2057 122 35 3 chr11 71836929 71837217 -78946336 - AluSx SINE Alu -15 297 1 532 281 18 12 chr11 71837217 71837384 -78946169 + MIR SINE MIR 92 259 -3 1846 156 17 0 chr11 71837389 71837677 -78945876 - AluJb SINE Alu -15 297 5 1726 149 8 0 chr11 71837712 71837967 -78945586 - AluSx SINE Alu -55 257 1 209 322 178 17 chr11 71837981 71838099 -78945454 - L2 LINE L2 -15 3257 3121 589 62 0 0 chr11 71838202 71838283 -78945270 - Alu SINE Alu -5 306 226 369 253 19 74 chr11 71838340 71838502 -78945051 - L2 LINE L2 -303 2969 2817 678 226 8 8 chr11 71839453 71839586 -78943967 + FLAM_A SINE Alu 1 133 0 2295 116 3 0 chr11 71839615 71839917 -78943636 - AluSq SINE Alu -10 303 1 231 286 66 22 chr11 71840028 71840119 -78943434 + L2 LINE L2 2926 3020 -252 2117 125 0 41 chr11 71840129 71840307 -78943246 - AluSx SINE Alu 0 312 151 2714 52 0 0 chr11 71840307 71840617 -78942936 - AluY SINE Alu -1 310 1 2117 125 0 41 chr11 71840617 71840758 -78942795 - AluSx SINE Alu -161 151 6 926 211 0 0 chr11 71840971 71841132 -78942421 - FRAM SINE Alu -14 162 2 504 260 47 0 chr11 71841216 71841343 -78942210 - L2 LINE L2 -10 3303 3171 1583 163 39 49 chr11 71841754 71842060 -78941493 + AluJb SINE Alu 3 305 -7 2065 110 7 23 chr11 71842060 71842387 -78941166 + AluSp SINE Alu 1 313 0 1351 169 30 100 chr11 71842651 71842982 -78940571 + AluJo SINE Alu 3 310 -2 2269 113 3 3 chr11 71843343 71843644 -78939909 - AluSx SINE Alu -11 301 1 1116 65 0 22 chr11 71843644 71843782 -78939771 - AluSq/x SINE Alu -178 135 1 237 319 18 0 chr11 71844106 71844219 -78939334 + L1ME LINE L1 5774 5888 -233 1973 143 3 10 chr11 71844219 71844520 -78939033 + AluJb SINE Alu 1 299 -13 846 132 19 6 chr11 71844520 71844679 -78938874 + GA-rich Low_complexity Low_complexity 1 161 0 2712 40 0 0 chr11 71844679 71844979 -78938574 + AluY SINE Alu 1 300 -11 2648 46 3 0 chr11 71844979 71845286 -78938267 + AluY SINE Alu 1 308 -3 220 286 181 0 chr11 71845417 71845522 -78938031 + L2 LINE L2 3145 3268 -4 911 174 25 0 chr11 71845626 71845787 -78937766 + FAM SINE Alu 9 173 -12 439 294 43 54 chr11 71845827 71845932 -78937621 - MIR SINE MIR 0 262 157 2321 92 3 3 chr11 71845932 71846227 -78937326 - AluSg SINE Alu -15 295 1 1770 128 66 0 chr11 71846227 71846515 -78937038 - AluSx SINE Alu -5 307 1 439 294 43 54 chr11 71846515 71846592 -78936961 - MIR SINE MIR -103 159 81 419 251 95 39 chr11 71847777 71847956 -78935597 - MIR3 SINE MIR -16 192 4 551 237 216 16 chr11 71848250 71848440 -78935113 - MIR SINE MIR 0 262 35 493 244 221 68 chr11 71848503 71848644 -78934909 - L2 LINE L2 -704 2610 2492 2495 53 0 0 chr11 71848644 71848952 -78934601 - AluY SINE Alu 0 308 1 493 244 221 68 chr11 71848952 71849383 -78934170 - L2 LINE L2 -822 2492 1923 2163 78 28 7 chr11 71849383 71849665 -78933888 + AluSx SINE Alu 1 288 -24 493 244 221 68 chr11 71849665 71849741 -78933812 - L2 LINE L2 -1391 1923 1860 1149 106 0 0 chr11 71849812 71849990 -78933563 - AluSg/x SINE Alu 0 310 133 2441 69 0 7 chr11 71850209 71850515 -78933038 - AluSx SINE Alu -8 304 1 2222 105 6 19 chr11 71850531 71850846 -78932707 - AluSx SINE Alu -1 311 1 380 282 71 36 chr11 71850927 71851164 -78932389 + MIR SINE MIR 20 256 -6 1940 115 10 14 chr11 71851807 71852103 -78931450 + AluSx SINE Alu 1 295 -17 2871 19 3 0 chr11 71852215 71852532 -78931021 - AluYb8 SINE Alu 0 318 1 2086 136 13 10 chr11 71852554 71852864 -78930689 - AluSx SINE Alu -1 311 1 848 141 0 70 chr11 71852870 71853012 -78930541 - FLAM_C SINE Alu 0 133 2 1297 222 62 22 chr11 71853111 71853512 -78930041 + HAL1 LINE L1 2055 2471 -36 2232 122 0 0 chr11 71853599 71853894 -78929659 + AluSq SINE Alu 1 295 -18 261 0 0 0 chr11 71853894 71853923 -78929630 + (CAAAT)n Simple_repeat Simple_repeat 2 30 0 1636 169 20 46 chr11 71854036 71854113 -78929440 + AluJo SINE Alu 1 79 -233 2233 89 0 4 chr11 71854113 71854394 -78929159 - AluSg SINE Alu -13 297 18 1636 169 20 46 chr11 71854394 71854618 -78928935 + AluJo SINE Alu 79 294 -18 837 199 88 85 chr11 71854626 71854957 -78928596 + L1MC4 LINE L1 7708 8039 -3 2278 123 0 0 chr11 71854959 71855267 -78928286 + AluSx SINE Alu 3 310 -2 1200 213 38 77 chr11 71855290 71855525 -78928028 + L1MC5 LINE L1 7223 7431 -530 2188 111 0 33 chr11 71855525 71855831 -78927722 - AluSx SINE Alu -16 296 1 1200 213 38 77 chr11 71855831 71856073 -78927480 + L1MC5 LINE L1 7431 7681 -280 1248 167 9 19 chr11 71856077 71856292 -78927261 - AluSg/x SINE Alu -15 295 83 718 96 0 0 chr11 71856292 71856386 -78927167 - AluSc SINE Alu -61 248 155 1337 143 20 99 chr11 71856514 71856807 -78926746 + AluJb SINE Alu 42 311 -1 246 178 0 0 chr11 71856811 71856905 -78926648 + Alu SINE Alu 241 334 0 304 289 70 48 chr11 71857407 71857594 -78925959 + MIR SINE MIR 36 226 -36 913 166 139 62 chr11 71857737 71857769 -78925784 + L1MC3 LINE L1 7194 7222 -563 2343 95 0 0 chr11 71857769 71858064 -78925489 + AluSx SINE Alu 3 297 -15 913 166 139 62 chr11 71858064 71858290 -78925263 + L1MC3 LINE L1 7222 7472 -313 725 171 0 0 chr11 71858293 71858404 -78925149 + FLAM_A SINE Alu 21 131 -11 2100 114 3 3 chr11 71858425 71858714 -78924839 + AluSx SINE Alu 6 294 -18 2346 118 0 0 chr11 71858718 71859031 -78924522 + AluSq SINE Alu 1 313 0 475 235 128 37 chr11 71859422 71859609 -78923944 + MIR SINE MIR 59 262 0 337 206 118 123 chr11 71859667 71859895 -78923658 - L1ME4a LINE L1 -4 6117 5891 2063 110 10 10 chr11 71859922 71860221 -78923332 - AluSx SINE Alu -13 299 1 463 155 60 0 chr11 71860932 71861016 -78922537 + AluJo SINE Alu 48 136 -176 537 176 44 132 chr11 71861442 71861562 -78921991 + MER33 DNA MER1_type 2 98 -2487 1570 132 111 31 chr11 71861562 71861851 -78921702 - AluSx SINE Alu 0 312 1 537 176 44 132 chr11 71861851 71861934 -78921619 + MER33 DNA MER1_type 98 187 -137 1059 212 18 9 chr11 71861934 71862156 -78921397 - AluJo SINE Alu -1 311 88 272 49 213 0 chr11 71862168 71862229 -78921324 + MER33 DNA MER1_type 161 234 -90 1895 160 7 0 chr11 71862231 71862519 -78921034 + AluSx SINE Alu 2 291 -21 1465 181 53 19 chr11 71862531 71862797 -78920756 + AluJo SINE Alu 1 275 -37 478 164 100 36 chr11 71862986 71863096 -78920457 - L2 LINE L2 -8 3305 3189 1876 117 4 0 chr11 71863277 71863525 -78920028 - AluSx SINE Alu -52 260 12 2217 114 0 10 chr11 71864105 71864411 -78919142 - AluSx SINE Alu -9 303 1 1104 146 26 42 chr11 71864548 71864740 -78918813 + MER5A DNA MER1_type 1 189 0 2039 140 0 6 chr11 71864912 71865226 -78918327 - AluSq SINE Alu -1 312 1 2282 107 0 0 chr11 71865228 71865527 -78918026 - AluSx SINE Alu -13 299 1 1990 108 43 0 chr11 71865538 71865815 -78917738 - AluSg SINE Alu -20 290 2 1020 183 69 5 chr11 71866038 71866240 -78917313 + MER20 DNA MER1_type 5 219 0 23 0 0 0 chr11 71866300 71866323 -78917230 + AT_rich Low_complexity Low_complexity 1 23 0 2103 148 13 0 chr11 71866324 71866629 -78916924 - AluSx SINE Alu -3 309 1 2150 120 17 0 chr11 71866887 71867187 -78916366 - AluSp SINE Alu -7 306 2 253 282 65 65 chr11 71867588 71867712 -78915841 - MER91C DNA MER1_type -2 138 15 619 267 134 13 chr11 71867949 71868181 -78915372 - MIR SINE MIR -1 261 2 371 272 60 56 chr11 71868271 71868579 -78914974 - L2 LINE L2 0 3313 2918 429 319 116 55 chr11 71868582 71868961 -78914592 - L2 LINE L2 -15 3298 2897 530 275 130 89 chr11 71868993 71869608 -78913945 - L2 LINE L2 -414 2900 2261 2104 86 3 10 chr11 71869630 71869920 -78913633 - AluSc SINE Alu -21 288 1 303 224 118 0 chr11 71869920 71869996 -78913557 - MER7A DNA MER2_type -263 83 1 958 169 60 27 chr11 71870257 71870323 -78913230 + MER5A DNA MER1_type 1 63 -126 1690 147 0 0 chr11 71870323 71870574 -78912979 + AluSx SINE Alu 1 251 -61 958 169 60 27 chr11 71870574 71870690 -78912863 + MER5A DNA MER1_type 63 189 0 2197 108 0 9 chr11 71871054 71871369 -78912184 - AluSx SINE Alu 0 312 1 801 149 8 30 chr11 71871369 71871503 -78912050 - AluJo/FLAM SINE Alu -171 131 1 1630 161 27 7 chr11 71871529 71871828 -78911725 - AluSx SINE Alu -7 305 1 1833 150 0 17 chr11 71871907 71872200 -78911353 + AluJb SINE Alu 5 292 -20 2151 99 3 3 chr11 71872294 71872588 -78910965 + AluSq SINE Alu 1 294 -19 721 181 82 16 chr11 71873027 71873209 -78910344 - L1MA4A LINE L1 -4 6299 6106 1728 122 48 14 chr11 71873209 71873503 -78910050 + AluY SINE Alu 1 304 -7 822 138 0 0 chr11 71873503 71873633 -78909920 + AluSg/x SINE Alu 180 309 -3 1438 116 22 127 chr11 71873639 71873685 -78909868 - L1MC3 LINE L1 -138 7647 7598 2204 68 26 39 chr11 71873685 71873852 -78909701 + L1PA8 LINE L1 5866 6029 -143 2211 101 3 0 chr11 71873852 71874150 -78909403 - AluSp SINE Alu -14 299 1 2204 68 26 39 chr11 71874150 71874293 -78909260 + L1PA8 LINE L1 6029 6172 0 1438 116 22 127 chr11 71874293 71874318 -78909235 - L1MC3 LINE L1 -187 7598 7572 2154 106 7 0 chr11 71874318 71874620 -78908933 - AluSp SINE Alu -9 304 1 1438 116 22 127 chr11 71874620 71874632 -78908921 - L1MC3 LINE L1 -213 7572 7560 2203 88 0 7 chr11 71874632 71874938 -78908615 - AluY SINE Alu -7 304 1 1438 116 22 127 chr11 71874938 71875069 -78908484 - L1MC3 LINE L1 -225 7560 7482 1204 185 100 11 chr11 71875069 71875339 -78908214 - AluJb SINE Alu -18 294 1 1438 116 22 127 chr11 71875339 71875484 -78908069 - L1MC3 LINE L1 -303 7482 7323 274 60 120 0 chr11 71875497 71875547 -78908006 - Alu SINE Alu -1 301 246 1535 111 172 4 chr11 71875991 71876253 -78907300 + AluSx SINE Alu 1 306 -6 1425 236 82 49 chr11 71876362 71876556 -78906997 + L1ME3A LINE L1 5655 5841 -329 2007 84 18 4 chr11 71876556 71876829 -78906724 + AluSx SINE Alu 14 290 -22 1425 236 82 49 chr11 71876829 71877125 -78906428 + L1ME3A LINE L1 5841 6161 -9 388 311 95 11 chr11 71877144 71877439 -78906114 + L2 LINE L2 2742 3061 -252 2216 95 10 0 chr11 71877657 71877952 -78905601 - AluSg SINE Alu -12 298 1 830 156 7 0 chr11 71877952 71878087 -78905466 - AluSq/x SINE Alu -177 136 1 435 132 0 0 chr11 71878112 71878180 -78905373 - U3 snRNA snRNA -149 68 1 1746 131 3 21 chr11 71878232 71878523 -78905030 + AluSg SINE Alu 1 286 -24 324 122 0 0 chr11 71878542 71878591 -78904962 + MER53 DNA DNA 141 189 0 199 209 15 60 chr11 71878973 71879040 -78904513 - MIR SINE MIR -103 105 42 554 124 0 82 chr11 71879267 71879364 -78904189 + AluSg/x SINE Alu 207 295 -14 220 278 0 15 chr11 71879569 71879636 -78903917 - MIR SINE MIR -133 75 13 369 331 80 0 chr11 71879783 71879934 -78903619 + MIR SINE MIR 60 222 -40 631 194 21 49 chr11 71880085 71880229 -78903324 + MIR SINE MIR 108 247 -15 283 336 82 8 chr11 71880976 71881098 -78902455 - L1MC/D LINE L1 -2060 5748 5618 203 328 31 0 chr11 71881102 71881166 -78902387 - MIR SINE MIR -103 159 94 2294 75 7 3 chr11 71881287 71881616 -78901937 + AluSx SINE Alu 1 312 0 2004 111 0 3 chr11 71881624 71881921 -78901632 + AluY SINE Alu 1 296 -15 232 369 65 6 chr11 71881937 71882105 -78901448 + L2 LINE L2 2795 2972 -342 1901 145 20 0 chr11 71882166 71882462 -78901091 - AluSx SINE Alu -10 302 1 1738 104 4 0 chr11 71882474 71882715 -78900838 - AluSx SINE Alu -10 302 61 225 0 0 0 chr11 71882823 71882848 -78900705 + (T)n Simple_repeat Simple_repeat 1 25 0 2035 130 0 0 chr11 71883228 71883521 -78900032 - AluSq SINE Alu -18 295 3 2056 99 10 7 chr11 71883530 71883847 -78899706 - AluSx SINE Alu 0 312 1 2129 102 0 0 chr11 71884090 71884402 -78899151 + AluSg SINE Alu 1 312 0 2042 97 14 0 chr11 71884405 71884695 -78898858 + AluSx SINE Alu 1 294 -18 2226 75 3 14 chr11 71884712 71885005 -78898548 + AluSp SINE Alu 1 290 -23 253 269 0 15 chr11 71885872 71885939 -78897614 - LTR33 LTR ERVL -11 510 445 2383 72 3 0 chr11 71885941 71886248 -78897305 + AluY SINE Alu 1 308 -3 1615 160 42 28 chr11 71886257 71886379 -78897174 + AluJb SINE Alu 3 122 -190 210 37 0 0 chr11 71886379 71886406 -78897147 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 1615 160 42 28 chr11 71886406 71886571 -78896982 + AluJb SINE Alu 122 294 -18 465 127 28 0 chr11 71886575 71886646 -78896907 + AluS SINE Alu 2 74 -238 906 281 121 18 chr11 71886746 71887144 -78896409 - LTR33 LTR ERVL -78 443 5 717 240 125 0 chr11 71887294 71887494 -78896059 + MIR SINE MIR 2 226 -36 328 268 52 10 chr11 71887707 71887804 -78895749 - MIR SINE MIR -65 143 43 284 194 311 10 chr11 71890727 71890830 -78892723 + MIR SINE MIR 21 154 -108 202 398 8 0 chr11 71891610 71891728 -78891825 - L3 LINE CR1 -112 1465 1347 189 315 120 11 chr11 71892096 71892188 -78891365 - MIR SINE MIR 0 262 161 2371 67 0 13 chr11 71892431 71892743 -78890810 - AluY SINE Alu -3 308 1 1551 173 11 0 chr11 71892754 71893025 -78890528 - AluJo SINE Alu 0 312 39 2215 88 0 23 chr11 71893072 71893377 -78890176 + AluSx SINE Alu 1 298 -14 1161 98 12 0 chr11 71893377 71893540 -78890013 + AluSg/x SINE Alu 132 296 -14 283 253 42 21 chr11 71893609 71893704 -78889849 + MIR SINE MIR 17 113 -95 703 246 62 44 chr11 71895167 71895439 -78888114 - LTR16A1 LTR ERVL -2 455 179 2062 116 0 23 chr11 71896232 71896534 -78887019 + AluSx SINE Alu 2 296 -16 293 267 63 48 chr11 71896611 71896817 -78886736 - L2 LINE L2 -212 3060 2852 659 247 12 12 chr11 71896890 71897052 -78886501 - MIR SINE MIR -88 174 13 431 246 95 0 chr11 71898374 71898500 -78885053 + MIR3 SINE MIR 67 204 -4 745 234 129 0 chr11 71898501 71898702 -78884851 + MIR SINE MIR 24 250 -12 2023 100 31 3 chr11 71898787 71899077 -78884476 + AluSq SINE Alu 4 301 -12 221 288 0 0 chr11 71899522 71899581 -78883972 + CT-rich Low_complexity Low_complexity 3 61 0 241 304 160 0 chr11 71900005 71900130 -78883423 + MIR3 SINE MIR 4 148 -60 566 224 55 7 chr11 71900189 71900355 -78883198 + MIR SINE MIR 4 171 -62 243 0 0 0 chr11 71901785 71901812 -78881741 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 898 134 8 0 chr11 71901982 71902116 -78881437 - FLAM_C SINE Alu -2 141 7 21 0 0 0 chr11 71902121 71902142 -78881411 + AT_rich Low_complexity Low_complexity 1 21 0 2139 108 0 0 chr11 71902149 71902445 -78881108 + AluSx SINE Alu 3 298 -14 1993 86 52 0 chr11 71902445 71902752 -78880801 + AluSx SINE Alu 1 322 0 1961 128 10 0 chr11 71902752 71903041 -78880512 + AluSq SINE Alu 1 292 -21 591 251 18 41 chr11 71903081 71903252 -78880301 - MIR SINE MIR -64 198 32 1494 198 3 23 chr11 71903475 71903778 -78879775 + AluJo SINE Alu 1 297 -15 2197 69 7 3 chr11 71903778 71904067 -78879486 + AluSg SINE Alu 1 290 -20 800 169 27 20 chr11 71904106 71904254 -78879299 - AluJo SINE Alu -83 229 81 1010 135 67 0 chr11 71904266 71904474 -78879079 - L1MC3 LINE L1 0 7785 7564 1824 168 130 50 chr11 71904474 71904566 -78878987 - LTR32 LTR ERVL 0 471 388 351 0 0 0 chr11 71904566 71904605 -78878948 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1599 150 3 65 chr11 71904609 71904916 -78878637 - AluJb SINE Alu -24 288 1 1824 168 130 50 chr11 71904916 71905241 -78878312 - LTR32 LTR ERVL -85 386 15 591 159 9 0 chr11 71905241 71905348 -78878205 - L1MC3 LINE L1 -217 7568 7461 2145 119 0 0 chr11 71905382 71905692 -78877861 - AluSx SINE Alu -2 310 1 1350 104 55 5 chr11 71905779 71905981 -78877572 - AluSp SINE Alu -99 214 3 2140 107 0 0 chr11 71905983 71906274 -78877279 - AluSx SINE Alu -18 294 4 2126 124 0 0 chr11 71906278 71906576 -78876977 - AluSx SINE Alu -12 300 3 1896 137 0 49 chr11 71907105 71907433 -78876120 - AluSx SINE Alu 0 312 1 810 171 0 34 chr11 71907434 71907580 -78875973 - AluJo SINE Alu -170 142 2 36 23 0 0 chr11 71907803 71907846 -78875707 + AT_rich Low_complexity Low_complexity 1 43 0 2428 67 0 6 chr11 71907854 71908167 -78875386 + AluY SINE Alu 1 311 0 1687 150 51 0 chr11 71908200 71908473 -78875080 - AluSx SINE Alu -25 287 1 210 37 0 0 chr11 71908474 71908501 -78875052 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1243 112 0 0 chr11 71908512 71908681 -78874872 - AluSx SINE Alu -143 169 1 668 168 80 16 chr11 71908701 71908713 -78874840 - FLAM_C SINE Alu -169 133 123 1811 141 21 7 chr11 71908713 71909003 -78874550 + AluSx SINE Alu 1 294 -18 668 168 80 16 chr11 71909003 71909115 -78874438 - FLAM_C SINE Alu -179 123 1 2067 118 0 19 chr11 71909151 71909466 -78874087 - AluSx SINE Alu -1 311 3 26 30 0 0 chr11 71909466 71909499 -78874054 + AT_rich Low_complexity Low_complexity 1 33 0 1872 138 17 0 chr11 71909499 71909788 -78873765 - AluSx SINE Alu -16 296 3 728 151 0 0 chr11 71909911 71910030 -78873523 + AluSp/q SINE Alu 189 307 -6 1513 130 169 0 chr11 71910059 71910313 -78873240 - AluSg SINE Alu 0 300 4 2103 115 0 0 chr11 71910325 71910620 -78872933 - AluSg SINE Alu -15 295 1 2091 117 3 25 chr11 71910653 71910970 -78872583 + AluSx SINE Alu 1 310 -2 2243 81 0 3 chr11 71910981 71911279 -78872274 + AluY SINE Alu 6 302 -9 1983 128 0 7 chr11 71911300 71911606 -78871947 + AluY SINE Alu 2 305 -6 2189 88 0 7 chr11 71912035 71912404 -78871149 + AluSq SINE Alu 1 367 0 1976 153 0 0 chr11 71912624 71912919 -78870634 + AluSx SINE Alu 1 295 -17 1241 84 18 0 chr11 71913250 71913417 -78870136 - FRAM SINE Alu -10 166 1 2106 125 3 0 chr11 71913518 71913829 -78869724 + AluSx SINE Alu 1 312 0 527 307 13 50 chr11 71913847 71914011 -78869542 - MIR SINE MIR -30 232 78 2013 132 3 3 chr11 71914011 71914315 -78869238 + AluSg SINE Alu 1 304 -6 527 307 13 50 chr11 71914315 71914388 -78869165 - MIR SINE MIR -184 78 4 223 352 76 0 chr11 71914694 71914799 -78868754 - MIR SINE MIR -102 160 48 336 316 22 37 chr11 71915109 71915174 -78868379 + L2 LINE L2 3180 3244 -69 2247 75 0 3 chr11 71915174 71915466 -78868087 + AluSx SINE Alu 1 291 -21 720 64 0 0 chr11 71915466 71915560 -78867993 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 336 316 22 37 chr11 71915560 71915629 -78867924 + L2 LINE L2 3242 3313 0 205 302 106 50 chr11 71915660 71916087 -78867466 + L2 LINE L2 2584 3046 -226 2395 74 0 10 chr11 71916459 71916769 -78866784 - AluY SINE Alu -4 307 1 261 125 36 36 chr11 71916774 71916830 -78866723 - AluJo SINE Alu -161 141 86 2276 95 0 22 chr11 71916855 71917172 -78866381 + AluSg SINE Alu 1 310 0 186 246 43 14 chr11 71917183 71917252 -78866301 - MIR SINE MIR -114 94 24 223 267 55 0 chr11 71917452 71917550 -78866003 - MIR SINE MIR -65 143 37 935 172 0 6 chr11 71918175 71918338 -78865215 - AluJo/FRAM SINE Alu -17 295 134 2317 77 7 0 chr11 71918338 71918637 -78864916 - AluSq SINE Alu -12 301 1 2325 68 0 3 chr11 71918642 71918935 -78864618 - AluY SINE Alu -11 300 9 202 304 102 27 chr11 71919269 71919443 -78864110 - L2 LINE L2 -896 2418 2221 2058 112 10 0 chr11 71919495 71919789 -78863764 + AluSx SINE Alu 1 297 -15 2308 80 0 3 chr11 71919792 71920093 -78863460 + AluY SINE Alu 1 300 -11 181 278 0 19 chr11 71920112 71920166 -78863387 + L2 LINE L2 3217 3269 -3 2110 87 14 3 chr11 71920421 71920710 -78862843 - AluSc SINE Alu -17 292 1 820 201 166 35 chr11 71921078 71921228 -78862325 + MLT1A1 LTR MaLR 1 130 -235 2078 118 0 7 chr11 71921228 71921532 -78862021 + AluSx SINE Alu 1 302 -10 820 201 166 35 chr11 71921532 71921640 -78861913 + MLT1A1 LTR MaLR 130 293 -72 682 155 10 0 chr11 71921642 71921745 -78861808 - FLAM_A SINE Alu -38 104 1 315 111 12 123 chr11 71921746 71921780 -78861773 + MLT1A1 LTR MaLR 325 346 -50 2378 76 0 0 chr11 71921780 71922082 -78861471 + AluY SINE Alu 2 303 -8 315 111 12 123 chr11 71922082 71922128 -78861425 + MLT1A1 LTR MaLR 346 396 0 901 142 0 0 chr11 71922189 71922323 -78861230 - AluJo/FRAM SINE Alu -23 289 156 1969 115 7 7 chr11 71922325 71922620 -78860933 + AluSx SINE Alu 1 295 -17 245 162 0 0 chr11 71922620 71922657 -78860896 - Alu SINE Alu -265 37 1 186 133 0 0 chr11 71922657 71922687 -78860866 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 2232 90 3 0 chr11 71923334 71923624 -78859929 - AluSx SINE Alu -21 291 1 2358 68 3 0 chr11 71924696 71924992 -78858561 - AluY SINE Alu -14 297 1 2056 101 0 4 chr11 71924994 71925270 -78858283 - AluSq SINE Alu -38 275 1 260 143 0 0 chr11 71925330 71925372 -78858181 - Alu SINE Alu -260 42 1 2041 118 7 3 chr11 71925424 71925729 -78857824 - AluSx SINE Alu -1 311 6 1028 249 39 1 chr11 71925729 71926077 -78857476 - LTR16C LTR ERVL -4 487 97 369 0 0 0 chr11 71926523 71926564 -78856989 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1987 114 0 4 chr11 71926564 71926845 -78856708 - AluSx SINE Alu -32 280 1 2081 113 13 16 chr11 71926854 71927164 -78856389 - AluSp SINE Alu -2 311 3 924 146 14 0 chr11 71927166 71927310 -78856243 - FRAM SINE Alu -15 161 16 2372 64 0 0 chr11 71928264 71928559 -78854994 - AluY SINE Alu -14 297 3 2365 79 0 16 chr11 71928588 71928905 -78854648 + AluSx SINE Alu 1 312 0 313 284 111 56 chr11 71928905 71929067 -78854486 + L2 LINE L2 3026 3196 -76 511 211 4 14 chr11 71929185 71929331 -78854222 - MIR SINE MIR -48 214 72 232 355 65 8 chr11 71929731 71929855 -78853698 - L3 LINE CR1 -111 1466 1336 1595 252 13 43 chr11 71930277 71930742 -78852811 - MLT1C LTR MaLR -8 459 9 22 0 0 0 chr11 71931427 71931449 -78852104 + AT_rich Low_complexity Low_complexity 1 22 0 387 229 101 17 chr11 71931477 71931621 -78851932 + LTR61 LTR ERV1 343 595 0 2160 122 0 3 chr11 71932499 71932811 -78850742 + AluSx SINE Alu 1 311 -1 205 242 121 87 chr11 71933345 71933494 -78850059 + MIR SINE MIR 106 259 -3 255 306 37 9 chr11 71933558 71933666 -78849887 - MIR SINE MIR -60 202 92 795 179 8 8 chr11 71933741 71933861 -78849692 + AluJo SINE Alu 2 124 -188 2168 94 0 7 chr11 71933861 71934160 -78849393 - AluSg SINE Alu -13 297 1 795 179 8 8 chr11 71934160 71934173 -78849380 + AluJo SINE Alu 123 135 -177 298 193 140 79 chr11 71934850 71934964 -78848589 + MIR3 SINE MIR 3 123 -85 1277 131 42 17 chr11 71935263 71935499 -78848054 - THE1C LTR MaLR 0 375 134 881 128 23 0 chr11 71935500 71935633 -78847920 + AluSx SINE Alu 1 136 -177 2384 74 3 0 chr11 71935633 71935932 -78847621 + AluSp SINE Alu 1 300 -13 639 48 19 77 chr11 71935935 71936039 -78847514 + AluY SINE Alu 202 299 -12 408 155 0 0 chr11 71936058 71936129 -78847424 + (TG)n Simple_repeat Simple_repeat 2 72 0 899 125 105 0 chr11 71936129 71936281 -78847272 + AluSx SINE Alu 123 290 -20 911 96 66 0 chr11 71936282 71936418 -78847135 - THE1C LTR MaLR -230 145 1 273 355 9 9 chr11 71936576 71936683 -78846870 - MIR SINE MIR -154 108 2 1191 119 12 107 chr11 71937394 71937528 -78846025 + AluJo SINE Alu 1 103 -209 1585 149 0 8 chr11 71937528 71937776 -78845777 + AluSx SINE Alu 36 281 -31 1191 119 12 107 chr11 71937776 71937884 -78845669 + AluJo SINE Alu 103 220 -92 207 0 0 0 chr11 71938076 71938099 -78845454 + (A)n Simple_repeat Simple_repeat 1 23 0 1616 159 13 23 chr11 71938099 71938401 -78845152 + AluJo SINE Alu 1 299 -13 2212 81 0 0 chr11 71938401 71938747 -78844806 + AluY SINE Alu 1 346 0 1967 125 10 10 chr11 71938753 71939058 -78844495 + AluSc SINE Alu 1 305 -4 21 0 0 0 chr11 71939823 71939844 -78843709 + AT_rich Low_complexity Low_complexity 1 21 0 278 222 176 19 chr11 71940761 71940869 -78842684 + MIR SINE MIR 17 141 -67 474 259 155 5 chr11 71940980 71941173 -78842380 - MIR SINE MIR -29 233 12 1102 8 0 8 chr11 71941661 71941787 -78841766 + AluY SINE Alu 88 212 -99 1498 155 8 8 chr11 71941787 71942038 -78841515 - AluSx SINE Alu -59 253 3 764 149 0 0 chr11 71942161 71942282 -78841271 + AluSg/x SINE Alu 189 309 -3 2212 101 3 0 chr11 71942294 71942592 -78840961 + AluSp SINE Alu 6 304 -9 852 130 0 8 chr11 71942636 71942767 -78840786 - FLAM_C SINE Alu -13 130 1 414 125 3 0 chr11 71942786 71942861 -78840692 - L1MB1 LINE L1 -1 6167 6101 449 186 93 34 chr11 71943106 71943224 -78840329 + L2 LINE L2 3189 3313 0 1312 154 33 37 chr11 71943586 71943859 -78839694 - AluJb SINE Alu -8 304 33 583 117 0 0 chr11 71943960 71944037 -78839516 - AluJ/FLAM SINE Alu -233 79 3 1342 175 3 28 chr11 71944060 71944351 -78839202 - AluY SINE Alu -27 284 1 1431 215 26 3 chr11 71944555 71944857 -78838696 - AluSx SINE Alu -1 311 3 2410 64 0 0 chr11 71945317 71945614 -78837939 + AluY SINE Alu 1 297 -14 2013 129 0 3 chr11 71945738 71946033 -78837520 - AluSg SINE Alu -16 294 1 1481 216 7 7 chr11 71946194 71946499 -78837054 + AluJb SINE Alu 1 305 -7 236 264 25 83 chr11 71946909 71947030 -78836523 - MIR SINE MIR -58 204 91 2047 94 3 18 chr11 71947650 71947936 -78835617 + AluSx SINE Alu 1 282 -30 1210 114 6 0 chr11 71948492 71948668 -78834885 - AluSq SINE Alu 0 313 137 423 50 33 0 chr11 71948866 71948926 -78834627 + Alu SINE Alu 2 63 -250 1971 110 20 10 chr11 71949553 71949845 -78833708 + AluSq SINE Alu 2 296 -17 529 275 27 7 chr11 71949873 71950022 -78833531 + MIR SINE MIR 47 198 -64 979 111 0 63 chr11 71950422 71950447 -78833106 - AluJb SINE Alu 0 312 287 2297 86 16 0 chr11 71950447 71950751 -78832802 - AluSq SINE Alu -4 309 1 979 111 0 63 chr11 71950751 71950914 -78832639 - AluJb SINE Alu -25 287 136 812 138 0 0 chr11 71951146 71951262 -78832291 + FLAM_C SINE Alu 1 116 -27 339 25 0 0 chr11 71951262 71951302 -78832251 + (CA)n Simple_repeat Simple_repeat 1 40 0 944 152 0 0 chr11 71951306 71951457 -78832096 - AluJb SINE Alu -18 294 144 2128 118 7 0 chr11 71951464 71951770 -78831783 - AluSx SINE Alu -4 308 1 2279 90 0 0 chr11 71952185 71952486 -78831067 - AluSg SINE Alu -9 301 1 273 119 0 0 chr11 71952491 71952533 -78831020 + (T)n Simple_repeat Simple_repeat 1 42 0 1737 103 4 16 chr11 71953240 71953492 -78830061 + AluSx SINE Alu 1 249 -63 628 287 56 5 chr11 71953736 71953952 -78829601 + MIR SINE MIR 28 254 -8 226 277 45 9 chr11 71954031 71954143 -78829410 + MIR SINE MIR 16 131 -131 188 94 62 0 chr11 71954130 71954162 -78829391 - MIR SINE MIR -70 192 159 * 2046 112 3 43 chr11 71954382 71954569 -78828984 - AluSx SINE Alu -1 311 118 198 0 0 0 chr11 71954569 71954591 -78828962 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2149 89 0 7 chr11 71954591 71954873 -78828680 - AluSc SINE Alu -29 280 1 2046 112 3 43 chr11 71954873 71955007 -78828546 - AluSx SINE Alu -192 120 2 302 302 57 0 chr11 71955395 71955501 -78828052 - HsTC2 DNA Tc2 -1785 113 2 2029 103 0 17 chr11 71955655 71955945 -78827608 + AluSx SINE Alu 1 285 -27 207 69 0 0 chr11 71955945 71955974 -78827579 + (TA)n Simple_repeat Simple_repeat 2 30 0 361 302 54 0 chr11 71956023 71956152 -78827401 - MIR3 SINE MIR -62 146 11 1474 167 31 22 chr11 71956348 71956672 -78826881 - L1MA4A LINE L1 -178 6125 5799 201 39 0 0 chr11 71956672 71956698 -78826855 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1754 130 56 0 chr11 71956698 71956968 -78826585 - AluSx SINE Alu -27 285 1 245 313 60 20 chr11 71957081 71957231 -78826322 - L1ME3A LINE L1 -28 6142 5987 1890 157 3 0 chr11 71957258 71957593 -78825960 - AluSx SINE Alu 0 312 1 1748 129 24 14 chr11 71957606 71957900 -78825653 - AluSx SINE Alu -15 297 1 22 0 0 0 chr11 71957907 71957929 -78825624 + AT_rich Low_complexity Low_complexity 1 22 0 966 180 24 0 chr11 71958046 71958213 -78825340 + AluJb SINE Alu 118 288 -24 2008 110 0 20 chr11 71958241 71958541 -78825012 - AluSq SINE Alu -18 295 2 1826 198 92 9 chr11 71958541 71958890 -78824663 - Tigger7 DNA MER2_type -250 483 90 2181 107 3 0 chr11 71958890 71959189 -78824364 + AluSx SINE Alu 1 300 -12 1826 198 92 9 chr11 71959189 71959273 -78824280 - Tigger7 DNA MER2_type -643 90 14 324 0 0 0 chr11 71959764 71959800 -78823753 + (TG)n Simple_repeat Simple_repeat 2 37 0 1095 142 11 0 chr11 71959920 71960103 -78823450 - AluSq SINE Alu -8 305 121 1070 96 0 14 chr11 71960260 71960406 -78823147 - AluSq SINE Alu -168 144 1 635 310 8 35 chr11 71960708 71960964 -78822589 - MIR SINE MIR -10 252 14 2089 116 3 3 chr11 71961003 71961304 -78822249 + AluSx SINE Alu 1 301 -11 1157 98 11 35 chr11 71961479 71961653 -78821900 - AluSx SINE Alu -135 177 8 1869 140 3 10 chr11 71961691 71961998 -78821555 + AluSx SINE Alu 1 305 -7 1547 150 16 52 chr11 71961999 71962305 -78821248 + AluJb SINE Alu 3 297 -15 2136 112 3 0 chr11 71962311 71962607 -78820946 + AluSp SINE Alu 1 297 -16 1849 118 15 0 chr11 71962711 71962982 -78820571 - AluSx SINE Alu -26 286 12 606 301 5 11 chr11 71963404 71963590 -78819963 - MIR3 SINE MIR -8 200 16 275 278 31 10 chr11 71963732 71963829 -78819724 + MER94 DNA DNA 4 102 -32 860 169 164 26 chr11 71963875 71964070 -78819483 + AluJo SINE Alu 85 306 -6 2293 81 0 16 chr11 71964079 71964387 -78819166 + AluSq SINE Alu 5 307 -6 2228 85 3 13 chr11 71964878 71965185 -78818368 - AluSg SINE Alu -6 304 1 348 181 36 12 chr11 71965185 71965268 -78818285 + MIR SINE MIR 70 154 -108 2272 104 0 0 chr11 71965276 71965575 -78817978 + AluSx SINE Alu 1 299 -13 2227 105 0 3 chr11 71965583 71965889 -78817664 + AluSx SINE Alu 5 309 -3 474 185 87 0 chr11 71965889 71965981 -78817572 + AluJo/FRAM SINE Alu 182 281 -31 823 80 24 24 chr11 71966082 71966207 -78817346 - AluSq/x SINE Alu -188 125 1 226 141 172 0 chr11 71966214 71966278 -78817275 - AluJ/FRAM SINE Alu 0 302 228 1910 92 73 4 chr11 71966310 71966583 -78816970 - AluSg SINE Alu -18 292 1 488 251 128 44 chr11 71966590 71966793 -78816760 - MIR SINE MIR -10 252 33 2511 45 0 13 chr11 71966863 71967177 -78816376 + AluY SINE Alu 1 310 -1 1992 85 44 4 chr11 71967544 71967856 -78815697 - AluY SINE Alu 0 323 1 1358 106 5 5 chr11 71967856 71968045 -78815508 - AluSx SINE Alu -123 189 1 391 248 95 22 chr11 71968050 71968187 -78815366 + L1MC3 LINE L1 7637 7783 -2 2002 109 3 10 chr11 71968190 71968484 -78815069 + AluSc SINE Alu 1 292 -17 2189 82 21 0 chr11 71968851 71969142 -78814411 + AluSx SINE Alu 1 297 -15 2255 104 3 3 chr11 72169834 72170131 -78613422 + AluSp SINE Alu 1 297 -16 1842 126 85 0 chr11 72170358 72170629 -78612924 + AluSx SINE Alu 1 294 -18 651 238 7 7 chr11 72170639 72170782 -78612771 + FLAM_C SINE Alu 1 143 0 296 289 174 26 chr11 72171011 72171201 -78612352 + MIR SINE MIR 20 237 -25 285 237 415 0 chr11 72171206 72171358 -78612195 + MIR SINE MIR 4 218 -44 2330 97 0 13 chr11 72171384 72171684 -78611869 - AluSc SINE Alu -13 296 1 1412 217 20 7 chr11 72172246 72172545 -78611008 + AluJo SINE Alu 1 303 -9 2383 95 0 16 chr11 72172550 72172866 -78610687 + AluSx SINE Alu 1 311 -1 1293 192 69 51 chr11 72173212 72173587 -78609966 - Charlie1 DNA MER1_type -2378 383 2 232 257 171 48 chr11 72173618 72173805 -78609748 - MER112 DNA MER1_type -50 210 1 679 234 8 0 chr11 72174052 72174176 -78609377 - FLAM_C SINE Alu -17 126 2 684 200 15 0 chr11 72174300 72174430 -78609123 - FLAM_A SINE Alu -1 132 1 2261 119 7 0 chr11 72174463 72174766 -78608787 - AluSq SINE Alu -8 305 1 699 169 61 14 chr11 72175225 72175373 -78608180 - L1MB3 LINE L1 -10 6173 6019 269 250 111 0 chr11 72175493 72175565 -78607988 + L2 LINE L2 3157 3236 -36 500 239 66 33 chr11 72175593 72175806 -78607747 + L1MC4 LINE L1 7275 7494 -548 4003 161 87 45 chr11 72175938 72176468 -78607085 + L1MC2 LINE L1 4855 5361 -983 638 180 62 31 chr11 72176468 72176596 -78606957 + FLAM_C SINE Alu 1 132 -1 4003 161 87 45 chr11 72176596 72177317 -78606236 + L1MC2 LINE L1 5361 6050 -294 508 200 139 0 chr11 72177317 72177432 -78606121 - FLAM_A SINE Alu -2 131 1 4003 161 87 45 chr11 72177432 72177492 -78606061 + L1MC2 LINE L1 6050 6106 -238 2340 92 0 3 chr11 72177492 72177795 -78605758 - AluSx SINE Alu -10 302 1 4003 161 87 45 chr11 72177795 72177817 -78605736 + L1MC2 LINE L1 6106 6234 -110 2525 65 0 13 chr11 72177919 72178225 -78605328 - AluY SINE Alu -9 302 1 290 136 17 34 chr11 72178230 72178289 -78605264 - AluJo SINE Alu -161 141 84 2406 95 0 22 chr11 72178314 72178631 -78604922 + AluSg SINE Alu 1 310 0 194 246 43 14 chr11 72178641 72178710 -78604843 - MIR SINE MIR -114 94 24 234 242 60 5 chr11 72178910 72179008 -78604545 - MIR SINE MIR -65 143 37 1291 164 3 122 chr11 72179633 72179796 -78603757 - AluJo SINE Alu -17 295 191 2445 77 7 0 chr11 72179796 72180095 -78603458 - AluSq SINE Alu -12 301 1 1291 164 3 122 chr11 72180095 72180266 -78603287 - AluJo SINE Alu -121 191 1 219 255 0 0 chr11 72180475 72180522 -78603031 + CT-rich Low_complexity Low_complexity 3 49 0 1869 194 88 5 chr11 72180546 72180630 -78602923 + Tigger7 DNA MER2_type 14 90 -643 2251 110 3 3 chr11 72180630 72180930 -78602623 - AluSx SINE Alu -12 300 1 1869 194 88 5 chr11 72180930 72181279 -78602274 + Tigger7 DNA MER2_type 90 483 -250 1997 116 3 20 chr11 72181279 72181572 -78601981 + AluSq SINE Alu 2 289 -24 1317 101 45 0 chr11 72181672 72181851 -78601702 - AluSg1 SINE Alu -121 188 2 1020 183 69 5 chr11 72182074 72182276 -78601277 + MER20 DNA MER1_type 5 219 0 23 0 0 0 chr11 72182336 72182359 -78601194 + AT_rich Low_complexity Low_complexity 1 23 0 2103 148 13 0 chr11 72182360 72182665 -78600888 - AluSx SINE Alu -3 309 1 2129 123 17 0 chr11 72182923 72183223 -78600330 - AluSp SINE Alu -7 306 2 253 282 65 65 chr11 72183624 72183748 -78599805 + MER91C DNA MER1_type 3 126 -14 619 267 134 13 chr11 72183985 72184217 -78599336 - MIR SINE MIR -1 261 2 219 231 0 19 chr11 72184307 72184359 -78599194 - L2 LINE L2 0 3313 3263 408 260 83 70 chr11 72184373 72184615 -78598938 - L2 LINE L2 -151 3162 2918 511 317 113 53 chr11 72184618 72184997 -78598556 - L2 LINE L2 -15 3298 2897 662 262 132 91 chr11 72185029 72185644 -78597909 - L2 LINE L2 -414 2900 2261 2229 83 3 10 chr11 72185668 72185956 -78597597 - AluSc SINE Alu -23 286 1 294 224 118 0 chr11 72185956 72186032 -78597521 - MER7A DNA MER2_type -263 83 1 929 168 60 38 chr11 72186315 72186383 -78597170 + MER5A DNA MER1_type 1 66 -123 1784 148 0 0 chr11 72186383 72186633 -78596920 + AluSx SINE Alu 2 251 -61 929 168 60 38 chr11 72186633 72186749 -78596804 + MER5A DNA MER1_type 66 189 0 2318 108 0 9 chr11 72187113 72187428 -78596125 - AluSx SINE Alu 0 312 1 809 149 8 30 chr11 72187428 72187562 -78595991 - AluJo/FLAM SINE Alu -171 131 1 1739 161 27 7 chr11 72187588 72187887 -78595666 - AluSx SINE Alu -7 305 1 1954 150 0 17 chr11 72187966 72188259 -78595294 + AluJb SINE Alu 5 292 -20 2234 111 0 13 chr11 72188353 72188660 -78594893 + AluSq SINE Alu 1 303 -10 1596 198 3 23 chr11 72188866 72189169 -78594384 + AluJo SINE Alu 1 297 -15 2053 119 21 0 chr11 72189169 72189455 -78594098 + AluSg SINE Alu 1 292 -18 679 154 91 0 chr11 72189455 72189565 -78593988 - AluJo/FLAM SINE Alu -190 122 3 2174 120 0 19 chr11 72189603 72189919 -78593634 - AluSx SINE Alu 0 312 3 26 30 0 0 chr11 72189919 72189952 -78593601 + AT_rich Low_complexity Low_complexity 1 33 0 1975 138 17 0 chr11 72189952 72190241 -78593312 - AluSx SINE Alu -16 296 3 716 151 0 0 chr11 72190364 72190483 -78593070 + AluSp/q SINE Alu 189 307 -6 1541 122 169 0 chr11 72190512 72190766 -78592787 - AluSg SINE Alu 0 300 4 2245 109 0 0 chr11 72190778 72191071 -78592482 - AluSg SINE Alu -15 295 3 2223 117 3 25 chr11 72191107 72191424 -78592129 + AluSx SINE Alu 1 310 -2 2397 82 0 13 chr11 72191427 72191742 -78591811 + AluY SINE Alu 1 311 0 1660 133 7 80 chr11 72191754 72192054 -78591499 + AluY SINE Alu 2 279 -32 261 232 10 101 chr11 72192398 72192497 -78591056 - MIR SINE MIR -82 180 91 2154 94 3 18 chr11 72193117 72193403 -78590150 + AluSx SINE Alu 1 282 -30 2300 125 0 0 chr11 72193959 72194272 -78589281 - AluSq SINE Alu 0 313 1 2385 88 0 0 chr11 72194688 72194985 -78588568 - AluSg SINE Alu -9 301 5 2260 102 10 3 chr11 72195030 72195325 -78588228 - AluSp SINE Alu -16 297 1 2088 93 0 38 chr11 72195610 72195901 -78587652 - AluSx SINE Alu -9 303 24 378 0 0 0 chr11 72195931 72195973 -78587580 + (T)n Simple_repeat Simple_repeat 1 42 0 2253 107 0 3 chr11 72196680 72196980 -78586573 + AluSx SINE Alu 1 299 -13 2039 140 0 6 chr11 72196982 72197296 -78586257 + AluSq SINE Alu 1 312 -1 1104 146 26 42 chr11 72197468 72197660 -78585893 - MER5A DNA MER1_type 0 189 1 2217 114 0 10 chr11 72197797 72198103 -78585450 + AluSx SINE Alu 1 303 -9 1949 112 0 0 chr11 72198683 72198932 -78584621 + AluSx SINE Alu 12 260 -52 2519 74 3 0 chr11 72199032 72199331 -78584222 - AluSp SINE Alu -13 300 1 936 128 23 0 chr11 72199331 72199464 -78584089 - AluSq/x SINE Alu -176 136 1 1263 131 42 17 chr11 72199465 72199701 -78583852 + THE1C LTR MaLR 134 375 0 327 184 140 79 chr11 72200000 72200114 -78583439 - MIR3 SINE MIR -85 123 3 367 302 54 0 chr11 72200927 72201056 -78582497 + MIR3 SINE MIR 11 146 -62 207 69 0 0 chr11 72201105 72201134 -78582419 + (TA)n Simple_repeat Simple_repeat 2 30 0 1606 93 0 23 chr11 72201134 72201350 -78582203 - AluSg/x SINE Alu -27 283 73 2361 90 3 0 chr11 72202523 72202813 -78580740 + AluSx SINE Alu 1 291 -21 186 133 0 0 chr11 72203461 72203491 -78580062 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 235 162 0 0 chr11 72203491 72203528 -78580025 + Alu SINE Alu 1 37 -264 2079 115 7 7 chr11 72203528 72203823 -78579730 - AluSx SINE Alu -17 295 1 884 156 0 7 chr11 72203825 72203960 -78579593 + AluJo/FRAM SINE Alu 156 289 -23 1277 81 19 0 chr11 72204087 72204248 -78579305 - FRAM SINE Alu -16 160 1 2140 144 0 0 chr11 72204349 72204655 -78578898 + AluSx SINE Alu 1 306 -6 289 246 0 43 chr11 72204655 72204724 -78578829 - MIR SINE MIR -189 73 8 232 343 76 0 chr11 72205034 72205139 -78578414 - MIR SINE MIR -102 160 48 354 314 7 50 chr11 72205449 72205514 -78578039 + L2 LINE L2 3180 3246 -67 2366 75 0 3 chr11 72205514 72205806 -78577747 + AluSx SINE Alu 1 291 -21 705 56 0 0 chr11 72205806 72205896 -78577657 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 354 314 7 50 chr11 72205896 72205969 -78577584 + L2 LINE L2 3244 3313 0 206 269 172 48 chr11 72206000 72206268 -78577285 + L2 LINE L2 2584 2884 -430 21 0 0 0 chr11 72208344 72208365 -78575188 + AT_rich Low_complexity Low_complexity 1 21 0 2089 125 10 10 chr11 72209130 72209435 -78574118 - AluSc SINE Alu -4 305 1 2328 81 0 0 chr11 72209441 72209783 -78573770 - AluY SINE Alu 0 342 1 1687 159 17 26 chr11 72209783 72210085 -78573468 - AluJo SINE Alu -13 299 1 338 142 0 18 chr11 72210188 72210254 -78573299 - Alu SINE Alu -257 51 1 425 125 3 0 chr11 72210259 72210334 -78573219 - L1MB1 LINE L1 -1 6167 6101 478 164 100 36 chr11 72210579 72210689 -78572864 + L2 LINE L2 3189 3305 -8 1719 156 19 32 chr11 72211059 72211367 -78572186 - AluJb SINE Alu -8 304 1 1954 121 43 3 chr11 72211373 72211655 -78571898 - AluSp SINE Alu -18 295 3 2257 107 0 0 chr11 72211657 72211948 -78571605 - AluSx SINE Alu -18 294 4 2253 124 0 0 chr11 72211952 72212250 -78571303 - AluSx SINE Alu -12 300 3 2013 137 0 49 chr11 72212778 72213106 -78570447 - AluSx SINE Alu 0 312 1 811 170 0 34 chr11 72213107 72213254 -78570299 - AluJo SINE Alu -170 142 1 615 116 18 54 chr11 72213346 72213458 -78570095 - AluJo/FRAM SINE Alu -6 306 199 450 172 0 103 chr11 72213458 72213574 -78569979 - AluSq/x SINE Alu -208 105 2 1561 167 109 7 chr11 72213585 72213762 -78569791 - AluSg SINE Alu -2 308 92 2217 112 3 20 chr11 72213762 72214067 -78569486 - AluSx SINE Alu -12 300 1 1561 167 109 7 chr11 72214067 72214165 -78569388 - AluSg SINE Alu -218 92 5 1231 213 3 52 chr11 72214368 72214696 -78568857 - AluSq SINE Alu -1 312 1 2057 121 14 0 chr11 72214808 72214828 -78568725 - AluSq SINE Alu -12 301 283 303 28 0 0 chr11 72214828 72214864 -78568689 + (TG)n Simple_repeat Simple_repeat 1 36 0 2057 121 14 0 chr11 72214864 72215140 -78568413 - AluSq SINE Alu -30 283 1 2091 116 4 0 chr11 72215144 72215419 -78568134 - AluSx SINE Alu -25 287 12 185 317 0 0 chr11 72215582 72215623 -78567930 - L2 LINE L2 -96 3176 3136 637 301 5 11 chr11 72215841 72216027 -78567526 - MIR3 SINE MIR -8 200 16 252 278 31 10 chr11 72216169 72216266 -78567287 + MER94 DNA DNA 4 102 -32 838 160 170 27 chr11 72216319 72216507 -78567046 + AluJo SINE Alu 92 306 -6 2357 81 3 3 chr11 72216516 72216811 -78566742 + AluSp SINE Alu 5 299 -14 733 159 26 0 chr11 72216842 72216955 -78566598 + AluJb SINE Alu 2 117 -195 2415 97 0 0 chr11 72216974 72217274 -78566279 + AluSx SINE Alu 1 300 -12 1351 169 30 100 chr11 72217635 72217966 -78565587 - AluJo SINE Alu -2 310 3 2065 110 7 23 chr11 72218230 72218557 -78564996 - AluSp SINE Alu 0 313 1 207 0 0 0 chr11 72218557 72218580 -78564973 + (T)n Simple_repeat Simple_repeat 1 23 0 419 251 95 39 chr11 72219544 72219723 -78563830 - MIR3 SINE MIR -16 192 4 551 237 216 16 chr11 72220017 72220207 -78563346 - MIR SINE MIR 0 262 35 488 246 229 41 chr11 72220270 72220411 -78563142 - L2 LINE L2 -704 2610 2497 184 42 0 0 chr11 72220411 72220435 -78563118 + (TTTG)n Simple_repeat Simple_repeat 2 180 0 2495 53 0 0 chr11 72220435 72220719 -78562834 - AluY SINE Alu -27 284 1 488 246 229 41 chr11 72220719 72221140 -78562413 - L2 LINE L2 -816 2498 1930 1996 98 3 14 chr11 72221150 72221462 -78562091 + AluSx SINE Alu 1 309 0 2015 130 0 0 chr11 72221482 72221775 -78561778 + AluSq SINE Alu 3 295 -18 216 0 0 0 chr11 72222153 72222177 -78561376 + (A)n Simple_repeat Simple_repeat 1 24 0 528 75 38 0 chr11 72222277 72222357 -78561196 - AluY SINE Alu -227 84 2 343 250 0 13 chr11 72222360 72222436 -78561117 - MER58B DNA MER1_type -6 335 261 1934 92 14 24 chr11 72222491 72222651 -78560902 - AluSg SINE Alu -20 290 133 1809 104 3 23 chr11 72222651 72222958 -78560595 - AluY SINE Alu -10 301 1 1934 92 14 24 chr11 72222958 72223090 -78560463 - AluSg SINE Alu -177 133 1 24 0 0 0 chr11 72223090 72223114 -78560439 + AT_rich Low_complexity Low_complexity 1 24 0 1556 149 0 8 chr11 72223114 72223362 -78560191 - AluSx SINE Alu -31 281 36 960 92 15 0 chr11 72223365 72223496 -78560057 - AluJo/FLAM SINE Alu -179 133 1 274 343 10 10 chr11 72224207 72224306 -78559247 + MIR SINE MIR 2 100 -162 712 115 65 36 chr11 72224481 72224620 -78558933 + THE1C LTR MaLR 3 145 -230 870 123 34 14 chr11 72224631 72224777 -78558776 - AluSg/x SINE Alu -39 273 125 390 159 0 0 chr11 72224777 72224846 -78558707 + (CA)n Simple_repeat Simple_repeat 2 70 0 1849 117 24 10 chr11 72225793 72226083 -78557470 + AluSq SINE Alu 2 295 -18 550 275 27 7 chr11 72226111 72226260 -78557293 + MIR SINE MIR 47 198 -64 29 0 0 0 chr11 72226654 72226683 -78556870 + AT_rich Low_complexity Low_complexity 1 29 0 2277 86 16 0 chr11 72226685 72226989 -78556564 - AluSq SINE Alu -4 309 1 963 120 0 19 chr11 72226994 72227152 -78556401 - AluJb SINE Alu -22 290 136 807 138 0 0 chr11 72227384 72227500 -78556053 + FLAM_C SINE Alu 1 116 -27 330 26 0 0 chr11 72227500 72227539 -78556014 + (CA)n Simple_repeat Simple_repeat 1 39 0 924 152 0 0 chr11 72227545 72227696 -78555857 - AluJb SINE Alu -18 294 144 180 0 0 0 chr11 72227814 72227834 -78555719 + (C)n Simple_repeat Simple_repeat 1 20 0 252 0 0 0 chr11 72227859 72227887 -78555666 + (A)n Simple_repeat Simple_repeat 1 28 0 2175 88 0 7 chr11 72228172 72228541 -78555012 + AluSq SINE Alu 1 367 0 1961 149 0 0 chr11 72228760 72229055 -78554498 + AluSx SINE Alu 1 295 -17 242 345 71 30 chr11 72229511 72229679 -78553874 - L2 LINE L2 -221 3051 2877 261 333 44 33 chr11 72229714 72229897 -78553656 + MIR SINE MIR 3 150 -58 1819 122 20 24 chr11 72229897 72230191 -78553362 - AluSx SINE Alu -12 300 8 1833 140 3 10 chr11 72230229 72230536 -78553017 + AluSx SINE Alu 1 305 -7 1526 159 17 28 chr11 72230537 72230827 -78552726 + AluJb SINE Alu 3 289 -23 2144 110 3 0 chr11 72230849 72231149 -78552404 + AluSp SINE Alu 1 301 -12 1161 113 0 0 chr11 72231264 72231432 -78552121 - AluSg/x SINE Alu -12 300 133 2322 69 0 3 chr11 72231651 72231956 -78551597 - AluSx SINE Alu -8 304 1 2068 105 6 19 chr11 72231972 72232287 -78551266 - AluSx SINE Alu -1 311 1 362 282 71 36 chr11 72232368 72232605 -78550948 + MIR SINE MIR 20 256 -6 1347 65 0 0 chr11 72232727 72232896 -78550657 + L1PA8 LINE L1 5866 6034 -138 1939 96 7 30 chr11 72232896 72233197 -78550356 - AluSg SINE Alu -16 294 1 503 245 128 49 chr11 72233267 72233471 -78550082 + MIR SINE MIR 33 252 -10 1793 94 73 11 chr11 72233479 72233754 -78549799 + AluSg SINE Alu 1 292 -18 280 154 154 0 chr11 72233786 72233851 -78549702 + AluJ/FRAM SINE Alu 228 302 0 892 160 0 84 chr11 72233936 72234186 -78549367 + AluSg/x SINE Alu 67 295 -15 1978 86 52 0 chr11 72234186 72234494 -78549059 + AluSx SINE Alu 1 322 0 1936 128 10 0 chr11 72234494 72234783 -78548770 + AluSq SINE Alu 1 292 -21 623 251 18 41 chr11 72234823 72234994 -78548559 - MIR SINE MIR -64 198 32 1446 198 3 23 chr11 72235217 72235520 -78548033 + AluJo SINE Alu 1 297 -15 1803 58 5 0 chr11 72235520 72235744 -78547809 + AluSg SINE Alu 1 225 -85 810 153 8 0 chr11 72235744 72235875 -78547678 - AluSc SINE Alu -70 239 108 189 0 0 0 chr11 72235975 72235996 -78547557 + (T)n Simple_repeat Simple_repeat 1 21 0 2352 67 0 13 chr11 72236206 72236518 -78547035 - AluY SINE Alu -3 308 1 1509 173 11 0 chr11 72236529 72236800 -78546753 - AluJo SINE Alu 0 312 39 2194 89 0 23 chr11 72236847 72237151 -78546402 + AluSx SINE Alu 1 297 -15 751 171 13 19 chr11 72237263 72237421 -78546132 - L1MA5 LINE L1 -345 5955 5799 201 39 0 0 chr11 72237421 72237447 -78546106 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1714 133 56 0 chr11 72237447 72237717 -78545836 - AluSx SINE Alu -27 285 1 255 319 69 14 chr11 72237830 72237974 -78545579 - L1ME3A LINE L1 -28 6142 5991 26 30 0 0 chr11 72238038 72238071 -78545482 + AT_rich Low_complexity Low_complexity 1 33 0 560 137 36 93 chr11 72238287 72238426 -78545127 - AluSq/x SINE Alu -180 132 2 1525 101 4 17 chr11 72238440 72238678 -78544875 - AluSx SINE Alu -15 297 63 259 0 0 0 chr11 72238778 72238806 -78544747 - AluY SINE Alu -208 93 66 1072 161 0 54 chr11 72238807 72239012 -78544541 - AluSx SINE Alu -113 199 6 847 203 0 0 chr11 72239233 72239386 -78544167 - FRAM SINE Alu -22 154 2 507 260 47 0 chr11 72239470 72239597 -78543956 - L2 LINE L2 -10 3303 3171 1294 170 43 53 chr11 72240008 72240290 -78543263 + AluJb SINE Alu 3 281 -31 1896 121 6 13 chr11 72240858 72241172 -78542381 + AluSx SINE Alu 1 312 0 430 294 43 54 chr11 72242197 72242274 -78541279 + MIR SINE MIR 81 157 -105 1628 128 66 0 chr11 72242274 72242562 -78540991 + AluSx SINE Alu 1 307 -5 2241 95 0 0 chr11 72242562 72242857 -78540696 + AluSg SINE Alu 1 295 -15 430 294 43 54 chr11 72242857 72242962 -78540591 + MIR SINE MIR 155 262 0 836 174 25 0 chr11 72243003 72243164 -78540389 - FAM SINE Alu -12 173 9 212 286 181 0 chr11 72243268 72243373 -78540180 - L2 LINE L2 -4 3268 3145 198 167 0 0 chr11 72243494 72243530 -78540023 + T-rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr11 72243641 72243661 -78539892 + (C)n Simple_repeat Simple_repeat 1 20 0 2339 70 7 0 chr11 72243661 72243959 -78539594 - AluY SINE Alu -11 300 1 3384 106 10 14 chr11 72243962 72244472 -78539081 - Tigger1 DNA MER2_type -334 2084 1577 804 200 71 0 chr11 72244486 72244641 -78538912 - FAM SINE Alu -9 166 1 261 0 0 0 chr11 72244644 72244673 -78538880 + (T)n Simple_repeat Simple_repeat 1 29 0 2176 105 0 0 chr11 72245100 72245396 -78538157 + AluSg SINE Alu 1 296 -14 357 24 0 0 chr11 72245397 72245439 -78538114 + (GA)n Simple_repeat Simple_repeat 1 42 0 2110 117 13 0 chr11 72245479 72245788 -78537765 + AluSq SINE Alu 1 313 0 1059 191 33 42 chr11 72245939 72246180 -78537373 - AluJo SINE Alu -68 244 6 1879 125 0 0 chr11 72246180 72246444 -78537109 + AluSx SINE Alu 35 298 -14 851 171 25 44 chr11 72247453 72247611 -78535942 + AluJb SINE Alu 137 291 -21 317 295 81 13 chr11 72247934 72248083 -78535470 + MARNA DNA Mariner 33 191 -395 5572 151 75 49 chr11 72248699 72249146 -78534407 - Tigger3b DNA MER2_type -1800 1228 794 1977 77 14 40 chr11 72249146 72249443 -78534110 + AluSx SINE Alu 1 289 -23 5572 151 75 49 chr11 72249443 72250192 -78533361 - Tigger3b DNA MER2_type -2234 794 1 4252 174 15 34 chr11 72250224 72250294 -78533259 - L1MB7 LINE L1 0 6184 6114 1524 181 10 7 chr11 72250294 72250597 -78532956 + AluJb SINE Alu 1 304 -8 4252 174 15 34 chr11 72250597 72251397 -78532156 - L1MB7 LINE L1 -70 6114 5331 2116 82 3 24 chr11 72251429 72251750 -78531803 - AluSp SINE Alu 0 315 1 180 274 14 41 chr11 72251858 72251931 -78531622 - L3b LINE CR1 -184 1399 1329 2053 82 45 7 chr11 72252820 72253111 -78530442 - AluY SINE Alu -9 302 1 1392 105 0 5 chr11 72253111 72253301 -78530252 - AluSx SINE Alu -123 189 1 557 188 120 8 chr11 72253306 72253439 -78530114 + L1MC3 LINE L1 7637 7784 -1 2057 109 0 7 chr11 72253442 72253736 -78529817 + AluSc SINE Alu 1 292 -17 2138 102 7 3 chr11 72254104 72254408 -78529145 + AluSq SINE Alu 1 305 -8 1001 84 56 0 chr11 72254433 72254576 -78528977 - L1PA8 LINE L1 0 6172 6022 2067 106 7 0 chr11 72254576 72254869 -78528684 + AluSx SINE Alu 1 295 -17 1604 181 7 10 chr11 72255119 72255418 -78528135 - AluJb SINE Alu -14 298 1 2437 61 0 13 chr11 72255419 72255731 -78527822 - AluY SINE Alu -3 308 1 1247 162 95 67 chr11 72255731 72256015 -78527538 - AluJo SINE Alu -10 292 1 1960 138 3 3 chr11 72256053 72256364 -78527189 + AluSp SINE Alu 1 311 -2 1281 206 17 21 chr11 72256372 72256663 -78526890 + AluJo SINE Alu 7 296 -16 1501 156 92 3 chr11 72256682 72256965 -78526588 + AluSx SINE Alu 5 312 0 1769 123 24 53 chr11 72256965 72257231 -78526322 + L1MB5 LINE L1 5666 6023 -151 1870 125 3 24 chr11 72257231 72257546 -78526007 + AluSq SINE Alu 1 309 0 1769 123 24 53 chr11 72257546 72257692 -78525861 + L1MB5 LINE L1 6023 6172 -2 392 287 0 0 chr11 72257701 72257788 -78525765 - MER58 DNA MER1_type -246 95 9 398 246 180 25 chr11 72257811 72258055 -78525498 + L1MC4 LINE L1 7619 7900 -142 1181 179 124 7 chr11 72258127 72258401 -78525152 - AluJo SINE Alu -1 311 6 254 130 56 0 chr11 72258412 72258466 -78525087 + L1MC4 LINE L1 7986 8042 0 1864 133 3 10 chr11 72258686 72258980 -78524573 + AluSq SINE Alu 1 292 -21 324 0 0 0 chr11 72259016 72259052 -78524501 + (CA)n Simple_repeat Simple_repeat 2 37 0 446 184 105 26 chr11 72259261 72259336 -78524217 - MER33 DNA MER1_type -2261 363 295 1472 175 49 21 chr11 72259336 72259621 -78523932 - AluJo SINE Alu -19 293 1 446 184 105 26 chr11 72259621 72259633 -78523920 - MER33 DNA MER1_type -2329 295 285 1757 160 7 0 chr11 72259633 72259921 -78523632 - AluSx SINE Alu -21 291 2 446 184 105 26 chr11 72259921 72259984 -78523569 - MER33 DNA MER1_type -2339 285 200 971 206 14 14 chr11 72259996 72260214 -78523339 + AluJo SINE Alu 88 305 -7 487 152 40 201 chr11 72260218 72260303 -78523250 - MER33 DNA MER1_type -2396 189 161 1437 137 118 15 chr11 72260303 72260574 -78522979 + AluSx SINE Alu 1 299 -13 487 152 40 201 chr11 72260574 72260712 -78522841 - MER33 DNA MER1_type -2424 161 2 457 141 51 0 chr11 72261138 72261216 -78522337 - AluJo SINE Alu -176 136 55 1936 110 10 10 chr11 72261933 72262234 -78521319 + AluSx SINE Alu 1 301 -11 559 211 39 23 chr11 72262353 72262481 -78521072 + AluJo/FLAM SINE Alu 1 130 -172 1188 178 155 11 chr11 72262483 72262618 -78520935 + AluJb SINE Alu 1 115 -187 1965 109 18 0 chr11 72262618 72262926 -78520627 + AluSp SINE Alu 1 313 0 1188 178 155 11 chr11 72262926 72263053 -78520500 + AluJb SINE Alu 115 302 0 1311 211 51 42 chr11 72263154 72263388 -78520165 + L1M4 LINE L1 4032 4262 -1884 270 0 0 0 chr11 72263388 72263418 -78520135 + (CA)n Simple_repeat Simple_repeat 1 30 0 1311 211 51 42 chr11 72263418 72263807 -78519746 + L1M4 LINE L1 4262 4703 -1443 1076 188 85 0 chr11 72263817 72264040 -78519513 + AluJb SINE Alu 55 296 -16 615 247 0 13 chr11 72264068 72264218 -78519335 + L1M4 LINE L1 4728 4875 -1271 563 131 0 0 chr11 72264219 72264303 -78519250 + AluJ/FLAM SINE Alu 3 86 -226 186 284 164 0 chr11 72264371 72264438 -78519115 - MIR SINE MIR -64 144 67 777 249 109 14 chr11 72264930 72265151 -78518402 - MIR SINE MIR -18 244 3 2395 74 0 3 chr11 72265320 72265632 -78517921 + AluY SINE Alu 1 311 0 385 288 78 42 chr11 72266265 72266456 -78517097 - L1ME4a LINE L1 -1 6120 5923 22 35 0 0 chr11 72267077 72267106 -78516447 + AT_rich Low_complexity Low_complexity 1 29 0 2179 103 0 0 chr11 72267412 72267713 -78515840 - AluSx SINE Alu -11 301 1 389 157 72 12 chr11 72268014 72268097 -78515456 + L2 LINE L2 3184 3271 -1 270 264 0 28 chr11 72268244 72268316 -78515237 + MER5A DNA MER1_type 7 76 -113 2416 167 5 47 chr11 72268317 72268707 -78514846 + L1M4c LINE L1 18 388 -5996 1812 146 38 0 chr11 72268707 72268994 -78514559 + AluJo SINE Alu 1 298 -14 2416 167 5 47 chr11 72268994 72269051 -78514502 + L1M4c LINE L1 388 446 -5938 1027 103 0 0 chr11 72269173 72269309 -78514244 + AluSq/x SINE Alu 1 136 -176 2199 70 7 0 chr11 72269309 72269594 -78513959 + AluSg SINE Alu 1 287 -23 3556 122 109 13 chr11 72269615 72270287 -78513266 + L1M4c LINE L1 481 1216 -5168 1117 189 56 60 chr11 72270288 72270312 -78513241 + MSTD LTR MaLR 1 24 -372 1813 123 17 33 chr11 72270312 72270613 -78512940 + AluSq SINE Alu 2 297 -16 1117 189 56 60 chr11 72270613 72270952 -78512601 + MSTD LTR MaLR 24 394 -2 6643 135 32 63 chr11 72270952 72271754 -78511799 + L1M4c LINE L1 1215 1953 -4429 713 204 0 0 chr11 72271754 72271867 -78511686 + FLAM_A SINE Alu 4 116 -17 6643 135 32 63 chr11 72271867 72272490 -78511063 + L1M4c LINE L1 1953 2594 -3788 1898 138 3 3 chr11 72272490 72272839 -78510714 - AluSx SINE Alu 0 349 1 1204 163 96 67 chr11 72272877 72273159 -78510394 + AluJo SINE Alu 1 290 -22 2563 56 0 13 chr11 72273161 72273467 -78510086 + AluY SINE Alu 1 302 -9 1104 106 12 25 chr11 72273467 72273627 -78509926 + AluSc SINE Alu 132 289 -20 373 253 0 0 chr11 72273682 72273757 -78509796 + MER58B DNA MER1_type 261 335 -6 2508 52 0 16 chr11 72273759 72274066 -78509487 + AluY SINE Alu 1 302 -9 4329 160 87 45 chr11 72274168 72274190 -78509363 - L1MC2 LINE L1 -110 6234 6214 2301 93 0 3 chr11 72274190 72274491 -78509062 + AluSx SINE Alu 1 300 -12 4329 160 87 45 chr11 72274491 72274551 -78509002 - L1MC2 LINE L1 -130 6214 6158 480 200 139 0 chr11 72274551 72274666 -78508887 + FLAM_A SINE Alu 1 131 -2 4329 160 87 45 chr11 72274666 72275387 -78508166 - L1MC2 LINE L1 -186 6158 5361 622 180 62 31 chr11 72275387 72275515 -78508038 - FLAM_C SINE Alu -1 132 1 4329 160 87 45 chr11 72275515 72276045 -78507508 - L1MC2 LINE L1 -983 5361 4855 550 239 66 33 chr11 72276177 72276390 -78507163 - L1MC4 LINE L1 -548 7494 7275 246 250 111 0 chr11 72276418 72276490 -78507063 - L2 LINE L2 -36 3236 3157 709 169 61 14 chr11 72276610 72276758 -78506795 + L1MB3 LINE L1 6019 6173 -10 2234 119 7 0 chr11 72277217 72277520 -78506033 + AluSq SINE Alu 1 305 -8 656 197 16 0 chr11 72277553 72277680 -78505873 + FLAM_A SINE Alu 1 129 -4 652 234 8 0 chr11 72277807 72277931 -78505622 + FLAM_C SINE Alu 2 126 -17 279 246 171 48 chr11 72278178 72278365 -78505188 + MER112 DNA MER1_type 1 210 -50 1420 189 69 51 chr11 72278396 72278771 -78504782 + Charlie1 DNA MER1_type 2 383 -2378 2388 92 0 19 chr11 72279117 72279432 -78504121 - AluSx SINE Alu -3 309 1 1509 207 17 3 chr11 72279437 72279736 -78503817 - AluJo SINE Alu -9 303 1 2311 97 0 13 chr11 72280298 72280598 -78502955 + AluSc SINE Alu 1 296 -13 222 246 127 3 chr11 72280624 72280776 -78502777 - MIR SINE MIR -44 218 4 226 289 174 26 chr11 72280781 72280971 -78502582 - MIR SINE MIR -25 237 20 634 238 7 7 chr11 72281200 72281343 -78502210 - FLAM_C SINE Alu 0 143 1 1819 126 85 0 chr11 72281353 72281624 -78501929 - AluSx SINE Alu -18 294 1 2259 101 3 3 chr11 72281851 72282148 -78501405 - AluSp SINE Alu -16 297 1 2153 131 7 3 chr11 72282906 72283212 -78500341 - AluSx SINE Alu -5 307 1 1160 184 55 9 chr11 72283304 72283521 -78500032 + 7SLRNA srpRNA srpRNA 1 227 -93 2214 117 0 10 chr11 72283521 72283820 -78499733 + AluSx SINE Alu 1 296 -16 352 154 11 11 chr11 72285272 72285363 -78498190 + (CA)n Simple_repeat Simple_repeat 2 92 0 2029 130 3 22 chr11 72285482 72285798 -78497755 - AluSg SINE Alu 0 310 1 561 231 25 0 chr11 72285806 72285927 -78497626 - FLAM_A SINE Alu -9 124 1 8349 123 57 76 chr11 72285927 72286082 -78497471 - Tigger1 DNA MER2_type -822 1596 1440 2382 61 3 7 chr11 72286082 72286375 -78497178 - AluY SINE Alu -19 292 1 8349 123 57 76 chr11 72286375 72286480 -78497073 - Tigger1 DNA MER2_type -978 1440 1335 1640 191 21 3 chr11 72286480 72286763 -78496790 + AluJb SINE Alu 1 288 -24 2427 74 0 7 chr11 72286770 72287069 -78496484 + AluY SINE Alu 1 297 -14 8349 123 57 76 chr11 72287069 72288207 -78495346 - Tigger1 DNA MER2_type -1089 1329 171 2090 129 0 4 chr11 72288207 72288487 -78495066 + AluSx SINE Alu 2 280 -32 342 0 0 0 chr11 72288488 72288526 -78495027 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 8349 123 57 76 chr11 72288526 72288561 -78494992 - Tigger1 DNA MER2_type -2247 171 137 2332 60 43 0 chr11 72288561 72288843 -78494710 - AluYa5 SINE Alu -16 295 2 8349 123 57 76 chr11 72288843 72289002 -78494551 - Tigger1 DNA MER2_type -2281 137 21 353 200 73 36 chr11 72289054 72289086 -78494467 - MIR SINE MIR 0 262 233 1880 169 94 15 chr11 72289086 72289488 -78494065 + Tigger2a DNA MER2_type 1 434 0 353 200 73 36 chr11 72289488 72289603 -78493950 - MIR SINE MIR -29 233 15 1623 176 3 17 chr11 72289807 72290109 -78493444 + AluJb SINE Alu 1 298 -14 2035 182 52 5 chr11 72290393 72290837 -78492716 - L1MB3 LINE L1 -7 6176 5712 674 231 0 0 chr11 72290846 72290967 -78492586 + FLAM_A SINE Alu 1 121 -12 207 0 0 0 chr11 72291890 72291913 -78491640 + (T)n Simple_repeat Simple_repeat 1 23 0 2145 114 10 7 chr11 72292420 72292717 -78490836 + AluSp SINE Alu 1 298 -15 1032 96 0 7 chr11 72292756 72292891 -78490662 + AluSc SINE Alu 1 134 -175 2124 113 0 10 chr11 72292891 72293193 -78490360 + AluY SINE Alu 1 299 -12 1369 211 58 0 chr11 72294109 72294384 -78489169 + AluJb SINE Alu 1 291 -21 2373 88 0 0 chr11 72294387 72294695 -78488858 + AluY SINE Alu 1 308 -3 2015 117 13 7 chr11 72294826 72295126 -78488427 - AluSp SINE Alu -11 302 1 2183 93 7 0 chr11 72295130 72295443 -78488110 - AluSg SINE Alu 0 315 1 22 0 0 0 chr11 72298015 72298037 -78485516 + AT_rich Low_complexity Low_complexity 1 22 0 421 235 141 24 chr11 72298330 72298500 -78485053 - MIR SINE MIR -14 248 59 2334 115 0 0 chr11 72298891 72299204 -78484349 - AluSq SINE Alu 0 313 1 1542 215 7 7 chr11 72299283 72299585 -78483968 - AluJb SINE Alu -10 302 1 2088 130 0 3 chr11 72299746 72300039 -78483514 + AluSg SINE Alu 1 292 -18 2516 60 0 3 chr11 72300163 72300461 -78483092 - AluY SINE Alu -14 297 1 2339 64 24 10 chr11 72300921 72301218 -78482335 + AluY SINE Alu 3 303 -8 1475 193 45 3 chr11 72301242 72301532 -78482021 + AluSx SINE Alu 1 302 -10 2117 122 0 7 chr11 72301571 72301859 -78481694 - AluSx SINE Alu -26 286 1 259 185 0 0 chr11 72301895 72301949 -78481604 - L1MB2 LINE L1 0 6171 6118 3502 184 34 16 chr11 72301988 72302242 -78481311 - L1MB5 LINE L1 -37 6137 5889 2448 92 0 0 chr11 72302242 72302548 -78481005 - AluY SINE Alu -5 306 1 3502 184 34 16 chr11 72302548 72303000 -78480553 - L1MB5 LINE L1 -285 5889 5418 663 142 0 35 chr11 72303260 72303373 -78480180 - AluJ SINE Alu -87 225 117 810 181 0 0 chr11 72303406 72303539 -78480014 - AluJ SINE Alu -179 133 1 234 268 294 0 chr11 72303749 72303902 -78479651 - MIR SINE MIR -18 244 47 1961 133 7 13 chr11 72303909 72304210 -78479343 + AluSx SINE Alu 4 302 -10 2050 116 7 7 chr11 72304212 72304513 -78479040 + AluSx SINE Alu 1 301 -11 313 280 220 0 chr11 72304866 72305080 -78478473 + MIR SINE MIR 2 262 0 1820 157 0 33 chr11 72305499 72305805 -78477748 + AluJb SINE Alu 1 296 -16 43 0 0 0 chr11 72305958 72306001 -78477552 + AT_rich Low_complexity Low_complexity 1 43 0 900 134 0 0 chr11 72306001 72306128 -78477425 - FLAM_C SINE Alu -4 129 3 2245 100 10 7 chr11 72306246 72306547 -78477006 + AluSx SINE Alu 1 302 -10 408 222 0 0 chr11 72306556 72306619 -78476934 + AluJ/FLAM SINE Alu 1 63 -239 275 186 0 0 chr11 72306719 72306762 -78476791 + FLAM SINE Alu 75 117 -16 6233 190 38 89 chr11 72306825 72307385 -78476168 + L1M4c LINE L1 2025 2612 -3770 1898 138 3 3 chr11 72307385 72307734 -78475819 - AluSx SINE Alu 0 349 1 6233 190 38 89 chr11 72307734 72307772 -78475781 + L1M4c LINE L1 2612 2650 -3732 1204 163 96 67 chr11 72307772 72308054 -78475499 + AluJo SINE Alu 1 290 -22 2561 61 0 13 chr11 72308056 72308367 -78475186 + AluY SINE Alu 1 307 -4 1324 220 10 20 chr11 72308374 72308674 -78474879 + AluJb SINE Alu 5 301 -1 6233 190 38 89 chr11 72308674 72309313 -78474240 + L1M4c LINE L1 2657 3327 -3055 729 176 0 0 chr11 72309313 72309421 -78474132 + FLAM_A SINE Alu 8 115 -27 2211 102 7 0 chr11 72309421 72309716 -78473837 + AluSq SINE Alu 1 297 -16 6233 190 38 89 chr11 72309716 72309991 -78473562 + L1M4c LINE L1 3326 3613 -2769 2186 122 0 0 chr11 72309991 72310285 -78473268 + AluSq SINE Alu 1 294 -19 6233 190 38 89 chr11 72310285 72310347 -78473206 + L1M4c LINE L1 3613 3677 -2705 1877 151 11 3 chr11 72310347 72310632 -78472921 + AluSx SINE Alu 7 293 -19 6233 190 38 89 chr11 72310632 72310907 -78472646 + L1M4c LINE L1 3677 3964 -2418 2093 68 68 7 chr11 72310907 72311188 -78472365 - AluSc SINE Alu -11 298 1 6233 190 38 89 chr11 72311188 72311790 -78471763 + L1M4c LINE L1 3964 4466 -1916 355 258 146 28 chr11 72312050 72312299 -78471254 - L1ME3A LINE L1 -158 6012 5725 216 0 0 0 chr11 72312299 72312323 -78471230 + (T)n Simple_repeat Simple_repeat 1 24 0 2219 88 3 7 chr11 72312689 72312984 -78470569 - AluY SINE Alu -17 294 1 1507 118 29 71 chr11 72312985 72313121 -78470432 - L1MC3 LINE L1 -195 7590 7471 1233 183 107 11 chr11 72313121 72313384 -78470169 - AluJb SINE Alu -24 288 1 1507 118 29 71 chr11 72313384 72313527 -78470026 - L1MC3 LINE L1 -314 7471 7323 2143 88 17 17 chr11 72313542 72313838 -78469715 - AluY SINE Alu -14 297 2 2231 102 10 3 chr11 72313842 72314137 -78469416 - AluSx SINE Alu -15 297 1 422 272 136 45 chr11 72314137 72314368 -78469185 - L1ME3A LINE L1 -391 5730 5521 2189 105 0 29 chr11 72314368 72314682 -78468871 - AluSx SINE Alu -7 305 1 422 272 136 45 chr11 72314682 72314845 -78468708 - L1ME3A LINE L1 -600 5521 5311 1977 138 3 0 chr11 72314971 72315254 -78468299 + AluSp SINE Alu 1 284 -29 186 43 0 0 chr11 72315254 72315277 -78468276 + (CATA)n Simple_repeat Simple_repeat 2 24 0 563 207 0 16 chr11 72315277 72315398 -78468155 - FLAM_C SINE Alu -21 122 4 1336 107 0 0 chr11 72316609 72316786 -78466767 + AluSg/x SINE Alu 131 307 -5 207 0 0 0 chr11 72316903 72316926 -78466627 + (A)n Simple_repeat Simple_repeat 1 23 0 674 231 0 0 chr11 72317849 72317970 -78465583 - FLAM_A SINE Alu -12 121 1 1938 203 47 5 chr11 72317976 72318425 -78465128 + L1MB3 LINE L1 5709 6176 -7 2002 133 0 13 chr11 72318709 72319009 -78464544 - AluJb SINE Alu -16 296 1 353 200 73 36 chr11 72319213 72319328 -78464225 + MIR SINE MIR 15 124 -138 1866 168 92 17 chr11 72319328 72319732 -78463821 - Tigger2a DNA MER2_type 0 434 1 353 200 73 36 chr11 72319732 72319764 -78463789 + MIR SINE MIR 124 262 0 781 126 28 70 chr11 72319816 72319959 -78463594 + Tigger1 DNA MER2_type 21 157 -2261 2342 66 42 0 chr11 72319975 72320263 -78463290 + AluYa5 SINE Alu 2 301 -10 971 136 14 0 chr11 72321213 72321353 -78462200 + FRAM SINE Alu 16 157 -19 2175 113 13 16 chr11 72321359 72321669 -78461884 + AluSp SINE Alu 3 311 -2 2085 114 0 4 chr11 72321678 72321959 -78461594 + AluSx SINE Alu 1 280 -32 369 0 0 0 chr11 72321959 72322000 -78461553 + (TAA)n Simple_repeat Simple_repeat 2 42 0 950 249 39 1 chr11 72322446 72322794 -78460759 + LTR16C LTR ERVL 97 487 -4 2065 118 7 3 chr11 72322794 72323099 -78460454 + AluSx SINE Alu 6 311 -1 241 143 0 0 chr11 72323151 72323193 -78460360 + Alu SINE Alu 1 42 -258 2087 101 0 4 chr11 72323253 72323529 -78460024 + AluSq SINE Alu 1 275 -38 2002 112 0 10 chr11 72323531 72323826 -78459727 + AluY SINE Alu 1 292 -19 676 181 82 16 chr11 72324266 72324448 -78459105 - L1MA4A LINE L1 -4 6299 6106 2233 78 0 7 chr11 72324448 72324741 -78458812 + AluY SINE Alu 1 291 -20 280 237 102 0 chr11 72324857 72324975 -78458578 - L1MC5 LINE L1 -46 7915 7786 225 0 0 0 chr11 72325142 72325167 -78458386 + (A)n Simple_repeat Simple_repeat 1 25 0 2382 83 0 0 chr11 72325352 72325652 -78457901 + AluSg SINE Alu 1 300 -10 21 57 0 0 chr11 72325945 72325980 -78457573 + AT_rich Low_complexity Low_complexity 1 35 0 185 205 26 0 chr11 72326499 72326538 -78457015 + MIR3 SINE MIR 122 161 -47 353 241 69 35 chr11 72329548 72329664 -78453889 - MIR SINE MIR -56 152 33 226 314 96 74 chr11 72330213 72330442 -78453111 + MIR SINE MIR 5 238 -24 26 0 0 0 chr11 72330460 72330486 -78453067 + GC_rich Low_complexity Low_complexity 1 26 0 321 284 28 50 chr11 72331464 72331605 -78451948 - MIR3 SINE MIR -21 187 50 347 278 40 23 chr11 72331713 72331866 -78451687 + MIR3 SINE MIR 5 163 -71 361 212 127 25 chr11 72332867 72332985 -78450568 + MER5A DNA MER1_type 59 188 -1 2422 65 0 7 chr11 72333439 72333748 -78449805 - AluY SINE Alu -4 307 1 392 318 31 0 chr11 72333804 72333933 -78449620 + L3 LINE CR1 1278 1410 -167 2511 57 0 0 chr11 72334268 72334569 -78448984 + AluY SINE Alu 1 301 -10 1703 179 0 7 chr11 72334579 72334881 -78448672 + AluJo SINE Alu 2 301 -11 245 289 39 29 chr11 72335475 72335579 -78447974 + MIR SINE MIR 44 148 -60 1076 113 0 6 chr11 72337049 72337209 -78446344 + AluJb SINE Alu 154 312 0 199 239 134 0 chr11 72337456 72337523 -78446030 - MIR SINE MIR -72 136 61 203 229 0 0 chr11 72340033 72340068 -78443485 + G-rich Low_complexity Low_complexity 85 119 0 948 173 0 0 chr11 72341452 72341602 -78441951 - FRAM SINE Alu -11 165 16 1905 149 3 17 chr11 72341629 72341930 -78441623 - AluJb SINE Alu -15 297 1 316 274 171 27 chr11 72342170 72342316 -78441237 + MIR3 SINE MIR 41 207 -1 760 119 63 16 chr11 72342327 72342453 -78441100 - AluSc SINE Alu -60 249 118 1005 83 0 8 chr11 72342908 72343040 -78440513 + AluJb SINE Alu 2 132 -180 2181 134 0 0 chr11 72343064 72343371 -78440182 + AluSx SINE Alu 1 307 -5 2457 153 61 43 chr11 72343653 72344365 -78439188 + MER21A LTR ERV1 2 841 -90 2125 108 0 20 chr11 72344365 72344670 -78438883 - AluSq SINE Alu -14 299 1 2457 153 61 43 chr11 72344670 72344757 -78438796 + MER21A LTR ERV1 841 925 -6 306 248 92 18 chr11 72344758 72344867 -78438686 - L1MC/D LINE L1 -1960 5848 5732 2219 43 46 4 chr11 72344919 72345200 -78438353 + AluY SINE Alu 1 293 -18 960 112 13 7 chr11 72345220 72345372 -78438181 - AluSx SINE Alu -159 153 1 284 269 202 19 chr11 72345372 72345476 -78438077 - MIR SINE MIR -56 152 30 231 88 0 0 chr11 72346569 72346603 -78436950 + (T)n Simple_repeat Simple_repeat 1 34 0 1099 218 186 9 chr11 72348652 72349001 -78434552 - L1MB5 LINE L1 -6 6168 5758 230 236 0 0 chr11 72349026 72349081 -78434472 - MIR SINE MIR -104 104 50 326 257 97 26 chr11 72350079 72350222 -78433331 + MIR SINE MIR 39 192 -63 481 265 195 5 chr11 72352345 72352545 -78431008 + L3 LINE CR1 1302 1539 -38 483 301 108 5 chr11 72355548 72355734 -78427819 - MIR SINE MIR -11 251 47 271 233 33 0 chr11 72356512 72356572 -78426981 - MIR SINE MIR -155 107 46 2119 100 0 17 chr11 72356575 72356876 -78426677 + AluSx SINE Alu 1 296 -16 334 244 12 12 chr11 72357846 72357928 -78425625 + L2 LINE L2 3226 3307 -6 896 280 142 49 chr11 72358472 72359124 -78424429 - L2 LINE L2 -265 3007 2296 220 346 13 0 chr11 72359170 72359248 -78424305 + L2 LINE L2 3234 3312 -1 236 240 120 0 chr11 72359758 72359833 -78423720 - L2 LINE L2 0 3272 3189 366 238 119 24 chr11 72360023 72360191 -78423362 - L2 LINE L2 -192 3080 2897 191 332 24 73 chr11 72360437 72360642 -78422911 - L2 LINE L2 -723 2591 2397 2245 122 0 0 chr11 72361928 72362239 -78421314 - AluSx SINE Alu -1 311 1 423 231 1 27 chr11 72362240 72362377 -78421176 + L1ME1 LINE L1 6045 6334 0 846 163 0 0 chr11 72362492 72362627 -78420926 - AluSg/x SINE Alu -8 302 168 546 155 0 0 chr11 72362627 72362711 -78420842 - AluJ/FLAM SINE Alu -228 84 1 22 35 0 0 chr11 72363004 72363033 -78420520 + AT_rich Low_complexity Low_complexity 1 29 0 1276 158 33 9 chr11 72363271 72363486 -78420067 - AluJo SINE Alu -92 220 1 1586 196 37 0 chr11 72363496 72363792 -78419761 - AluJo SINE Alu -5 307 1 2097 128 0 13 chr11 72363827 72364170 -78419383 + AluSx SINE Alu 1 312 0 2166 90 20 10 chr11 72364338 72364637 -78418916 + AluSx SINE Alu 1 302 -10 818 159 97 7 chr11 72364637 72364782 -78418771 + AluJb SINE Alu 134 291 -21 180 0 0 0 chr11 72365265 72365285 -78418268 + (C)n Simple_repeat Simple_repeat 1 20 0 231 36 0 0 chr11 72365312 72365340 -78418213 + (A)n Simple_repeat Simple_repeat 1 28 0 275 333 124 30 chr11 72365558 72365711 -78417842 - L2 LINE L2 -19 3294 3157 727 209 8 0 chr11 72365711 72365840 -78417713 + FLAM_A SINE Alu 1 130 -3 275 333 124 30 chr11 72365840 72366016 -78417537 - L2 LINE L2 -156 3157 2934 2014 117 13 3 chr11 72367166 72367464 -78416089 + AluSx SINE Alu 1 301 -11 277 319 44 11 chr11 72367478 72367547 -78416006 - MIR SINE MIR -41 221 156 1671 164 19 51 chr11 72367547 72367717 -78415836 - AluJo SINE Alu 0 302 145 2204 91 0 13 chr11 72367717 72367896 -78415657 - AluSp SINE Alu -1 312 137 2493 54 0 0 chr11 72367896 72368192 -78415361 - AluY SINE Alu -15 296 1 2204 91 0 13 chr11 72368192 72368319 -78415234 - AluSp SINE Alu -176 137 10 1671 164 19 51 chr11 72368319 72368460 -78415093 - AluJo SINE Alu -157 145 1 277 319 44 11 chr11 72368460 72368481 -78415072 - MIR SINE MIR -106 156 128 2298 103 3 0 chr11 72370327 72370639 -78412914 + AluSp SINE Alu 1 313 0 2159 91 10 7 chr11 72370653 72370951 -78412602 + AluSc SINE Alu 3 301 -8 198 0 0 0 chr11 72371124 72371146 -78412407 + (A)n Simple_repeat Simple_repeat 1 22 0 183 376 46 18 chr11 72371947 72372056 -78411497 + MER5B DNA MER1_type 1 112 -66 1398 116 39 52 chr11 72372322 72372474 -78411079 - MER30 DNA MER1_type 0 230 81 208 0 0 0 chr11 72372480 72372503 -78411050 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2126 88 0 24 chr11 72372503 72372791 -78410762 - AluSg SINE Alu -5 305 1 1398 116 39 52 chr11 72372791 72372871 -78410682 - MER30 DNA MER1_type -149 81 1 194 234 0 21 chr11 72372884 72372931 -78410622 + L2 LINE L2 3215 3260 -12 * 485 250 179 5 chr11 72372919 72373108 -78410445 - MIR SINE MIR -19 243 30 21 0 0 31 chr11 72373425 72373441 -78410112 + AT_rich Low_complexity Low_complexity 1 16 -15 1646 168 17 3 chr11 72373441 72373732 -78409821 - AluJb SINE Alu -17 295 1 21 0 0 31 chr11 72373732 72373747 -78409806 + AT_rich Low_complexity Low_complexity 16 31 0 225 0 0 0 chr11 72373831 72373856 -78409697 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1726 158 7 10 chr11 72373891 72374189 -78409364 - AluJb SINE Alu -11 301 5 662 190 38 38 chr11 72374391 72374547 -78409006 - MER105 DNA DNA -3 201 46 1087 181 109 16 chr11 72374547 72374795 -78408758 - MER58B DNA MER1_type 0 341 71 470 176 28 74 chr11 72374789 72374897 -78408656 + U13 snRNA snRNA 1 103 -1 * 298 237 121 71 chr11 72375094 72375292 -78408261 + L1MC4 LINE L1 7835 8042 0 1220 193 132 19 chr11 72375572 72375837 -78407716 + AluJo SINE Alu 4 298 -4 3064 108 11 86 chr11 72376056 72376111 -78407442 + MER75 DNA T2_type 1 59 -455 2022 111 47 0 chr11 72376111 72376408 -78407145 - AluSq SINE Alu -1 312 2 3064 108 11 86 chr11 72376408 72376635 -78406918 + MER75 DNA T2_type 59 302 -212 1901 108 0 76 chr11 72376635 72376770 -78406783 + AluSx SINE Alu 1 145 -167 1948 126 7 0 chr11 72376770 72377063 -78406490 + AluSp SINE Alu 1 295 -18 2141 94 7 0 chr11 72377064 72377351 -78406202 + AluSq SINE Alu 1 289 -24 180 0 0 0 chr11 72377357 72377377 -78406176 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1901 108 0 76 chr11 72377377 72377548 -78406005 + AluSx SINE Alu 150 292 -20 3064 108 11 86 chr11 72377548 72377722 -78405831 + MER75 DNA T2_type 302 411 -103 2425 54 0 0 chr11 72377722 72378019 -78405534 + AluY SINE Alu 1 297 -14 3064 108 11 86 chr11 72378019 72378116 -78405437 + MER75 DNA T2_type 411 514 0 411 200 200 27 chr11 72378127 72378237 -78405316 + FLAM_A SINE Alu 1 129 -13 1789 117 0 4 chr11 72378850 72379114 -78404439 - AluSx SINE Alu -11 301 39 1742 148 26 7 chr11 72379691 72379996 -78403557 + AluJb SINE Alu 1 311 -1 1525 183 53 0 chr11 72380019 72380303 -78403250 - AluJo SINE Alu -13 299 1 539 321 62 16 chr11 72380379 72380572 -78402981 - MIR SINE MIR -25 237 36 2274 77 0 3 chr11 72380870 72381168 -78402385 + AluSg SINE Alu 1 297 -13 2360 74 0 0 chr11 72381176 72381472 -78402081 + AluY SINE Alu 1 296 -15 718 201 0 8 chr11 72381485 72381619 -78401934 + FLAM_A SINE Alu 1 133 0 1491 211 6 13 chr11 72381627 72381940 -78401613 + AluJb SINE Alu 1 311 -1 1160 186 19 0 chr11 72382232 72382447 -78401106 - AluJb SINE Alu -7 305 87 1189 84 0 0 chr11 72383768 72383923 -78399630 - L1PA6 LINE L1 -2 6152 5998 2105 107 0 49 chr11 72383963 72384290 -78399263 - AluSx SINE Alu -1 311 1 1778 131 13 30 chr11 72384517 72384658 -78398895 + AluSq SINE Alu 1 143 -170 1724 102 114 8 chr11 72384658 72384922 -78398631 + AluSg SINE Alu 7 298 -12 1778 131 13 30 chr11 72384922 72385085 -78398468 + AluSq SINE Alu 143 300 -13 2119 102 17 0 chr11 72385688 72385981 -78397572 - AluSq SINE Alu -15 298 1 808 183 0 0 chr11 72386333 72386475 -78397078 + FLAM_C SINE Alu 1 142 -1 189 0 0 0 chr11 72386493 72386514 -78397039 + (T)n Simple_repeat Simple_repeat 1 21 0 938 157 0 0 chr11 72386532 72386685 -78396868 + AluSp SINE Alu 149 301 -12 1323 214 58 4 chr11 72387601 72387877 -78395676 + AluJb SINE Alu 1 291 -11 2311 71 0 16 chr11 72387880 72388191 -78395362 + AluY SINE Alu 1 306 -5 6916 200 45 75 chr11 72388191 72388215 -78395338 + L1MB7 LINE L1 2967 2990 -3156 1670 129 57 7 chr11 72388215 72388495 -78395058 + AluSx SINE Alu 1 294 -18 6916 200 45 75 chr11 72388495 72388790 -78394763 + L1MB7 LINE L1 2990 3292 -2854 1624 167 29 0 chr11 72388790 72389104 -78394449 + AluJo SINE Alu 1 322 0 6916 200 45 75 chr11 72389104 72389337 -78394216 + L1MB7 LINE L1 3292 3530 -2616 303 28 0 0 chr11 72389337 72389373 -78394180 + (CA)n Simple_repeat Simple_repeat 2 37 0 6916 200 45 75 chr11 72389373 72389942 -78393611 + L1MB7 LINE L1 3530 4114 -2032 1863 141 0 46 chr11 72389942 72390269 -78393284 - AluSx SINE Alu 0 312 1 6916 200 45 75 chr11 72390269 72390286 -78393267 + L1MB7 LINE L1 4114 4130 -2016 2287 76 0 0 chr11 72390286 72390576 -78392977 - AluY SINE Alu -21 290 1 6916 200 45 75 chr11 72390576 72390902 -78392651 + L1MB7 LINE L1 4130 4464 -1682 1779 104 107 4 chr11 72390902 72391182 -78392371 + AluSg SINE Alu 1 309 -1 6916 200 45 75 chr11 72391182 72391849 -78391704 + L1MB7 LINE L1 4464 5040 -1106 946 157 97 147 chr11 72391899 72392199 -78391354 + AluJb SINE Alu 6 290 -22 4057 158 43 40 chr11 72392200 72393077 -78390476 + L1MB7 LINE L1 5299 6178 -6 1904 123 23 3 chr11 72394339 72394640 -78388913 - AluJb SINE Alu -5 307 1 1998 109 48 3 chr11 72395897 72396191 -78387362 - AluSx SINE Alu -4 308 2 3054 98 8 68 chr11 72396191 72396418 -78387135 + MER75 DNA T2_type 45 284 -230 1901 108 0 76 chr11 72396418 72396553 -78387000 + AluSx SINE Alu 1 145 -167 1948 126 7 0 chr11 72396553 72396846 -78386707 + AluSp SINE Alu 1 295 -18 2141 94 7 0 chr11 72396847 72397134 -78386419 + AluSq SINE Alu 1 289 -24 180 0 0 0 chr11 72397140 72397160 -78386393 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1901 108 0 76 chr11 72397160 72397331 -78386222 + AluSx SINE Alu 150 292 -20 3054 98 8 68 chr11 72397331 72397505 -78386048 + MER75 DNA T2_type 284 413 -101 2425 54 0 0 chr11 72397505 72397802 -78385751 + AluY SINE Alu 1 297 -14 3054 98 8 68 chr11 72397802 72397899 -78385654 + MER75 DNA T2_type 413 514 0 411 200 200 27 chr11 72397910 72398020 -78385533 + FLAM_A SINE Alu 1 129 -13 1789 117 0 4 chr11 72398633 72398897 -78384656 - AluSx SINE Alu -11 301 39 1722 151 26 7 chr11 72399474 72399779 -78383774 + AluJb SINE Alu 1 311 -1 1525 183 53 0 chr11 72399802 72400086 -78383467 - AluJo SINE Alu -13 299 1 539 321 62 16 chr11 72400162 72400355 -78383198 - MIR SINE MIR -25 237 36 2274 77 0 3 chr11 72400653 72400951 -78382602 + AluSg SINE Alu 1 297 -13 2327 70 3 3 chr11 72400959 72401257 -78382296 + AluY SINE Alu 1 298 -13 640 215 0 15 chr11 72401270 72401405 -78382148 + FLAM_A SINE Alu 1 133 0 1368 217 10 16 chr11 72401413 72401726 -78381827 + AluJb SINE Alu 1 311 -1 228 264 75 19 chr11 72401753 72401859 -78381694 + L1ME4a LINE L1 5968 6079 -42 1203 165 18 13 chr11 72402012 72402236 -78381317 - AluJb SINE Alu -1 311 87 1189 84 0 0 chr11 72403557 72403712 -78379841 - L1PA6 LINE L1 -2 6152 5998 36 0 0 0 chr11 72403752 72403788 -78379765 + AT_rich Low_complexity Low_complexity 1 36 0 2049 117 0 7 chr11 72403788 72404079 -78379474 - AluSx SINE Alu -23 289 1 2115 93 3 3 chr11 72404306 72404595 -78378958 + AluSg SINE Alu 1 289 -21 972 172 0 11 chr11 72404603 72404777 -78378776 + FRAM SINE Alu 1 169 -7 2998 140 68 9 chr11 72404777 72405354 -78378199 - L1MB4 LINE L1 -8 6172 5562 1496 231 51 78 chr11 72405354 72405771 -78377782 - L1MC4 LINE L1 -266 7776 7378 2243 110 0 0 chr11 72405771 72406081 -78377472 - AluSx SINE Alu -2 310 1 1496 231 51 78 chr11 72406081 72406266 -78377287 - L1MC4 LINE L1 -664 7378 7190 180 0 0 0 chr11 72406283 72406303 -78377250 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 728 156 0 0 chr11 72406304 72406413 -78377140 - FAM SINE Alu -23 162 54 2254 68 0 3 chr11 72406441 72406736 -78376817 - AluY SINE Alu -17 294 1 2086 92 7 10 chr11 72406742 72407035 -78376518 - AluSg SINE Alu -18 292 1 2060 93 7 0 chr11 72407039 72407352 -78376201 - AluSg SINE Alu 0 315 1 309 321 85 36 chr11 72407363 72407528 -78376025 + L1ME4a LINE L1 5834 6006 -115 2093 119 3 0 chr11 72407569 72407864 -78375689 - AluSx SINE Alu -16 296 1 198 279 233 23 chr11 72408062 72408191 -78375362 + MIR SINE MIR 67 222 -40 233 385 52 22 chr11 72408234 72408369 -78375184 - L2 LINE L2 0 3272 3134 625 172 15 52 chr11 72408861 72408876 -78374677 - FLAM_C SINE Alu -179 133 119 276 30 0 0 chr11 72408876 72408909 -78374644 + (TTA)n Simple_repeat Simple_repeat 1 33 0 625 172 15 52 chr11 72408909 72409027 -78374526 - FLAM_C SINE Alu -193 119 5 1455 169 105 0 chr11 72409100 72409367 -78374186 + AluJb SINE Alu 1 295 -17 22 0 0 0 chr11 72409521 72409543 -78374010 + AT_rich Low_complexity Low_complexity 1 22 0 2264 81 0 16 chr11 72413222 72413530 -78370023 + AluSx SINE Alu 1 303 -9 306 50 0 0 chr11 72413700 72413740 -78369813 + (TG)n Simple_repeat Simple_repeat 1 40 0 516 125 229 0 chr11 72414122 72414218 -78369335 - FLAM_C SINE Alu -24 119 2 2161 101 7 3 chr11 72414967 72415275 -78368278 + AluSq SINE Alu 1 309 -4 195 307 79 40 chr11 72415756 72415857 -78367696 - L2 LINE L2 -15 3257 3153 668 206 67 81 chr11 72416023 72416139 -78367414 - MER58A DNA MER1_type -2196 224 111 2312 77 0 3 chr11 72416139 72416438 -78367115 + AluY SINE Alu 1 298 -13 668 206 67 81 chr11 72416438 72416530 -78367023 - MER58A DNA MER1_type -2309 111 19 491 222 0 0 chr11 72417713 72417803 -78365750 - L2 LINE L2 -33 3280 3191 298 277 179 9 chr11 72418024 72418136 -78365417 - MER5B DNA MER1_type -47 131 1 391 253 53 0 chr11 72418170 72418265 -78365288 - HsTC2 DNA Tc2 -1781 117 18 386 194 0 0 chr11 72418371 72418443 -78365110 - AluJ/FRAM SINE Alu 0 302 231 1952 142 10 0 chr11 72418617 72418919 -78364634 - AluSx SINE Alu -7 305 1 265 293 123 0 chr11 72419049 72419155 -78364398 - MIR SINE MIR -1 261 143 215 192 0 19 chr11 72419205 72419257 -78364296 - MIR SINE MIR -102 160 110 701 106 0 0 chr11 72421045 72421139 -78362414 + AluJ/FLAM SINE Alu 2 95 -217 288 158 0 0 chr11 72421768 72421825 -78361728 + GA-rich Low_complexity Low_complexity 1 57 0 182 311 14 27 chr11 72422338 72422412 -78361141 - MIR SINE MIR -11 251 179 681 209 68 18 chr11 72422743 72422906 -78360647 + MER5A DNA MER1_type 14 184 -5 181 292 94 10 chr11 72425718 72425814 -78357739 - MIR SINE MIR -65 197 94 27 0 0 0 chr11 72428778 72428805 -78354748 + AT_rich Low_complexity Low_complexity 1 27 0 2335 83 7 3 chr11 72429474 72429774 -78353779 - AluY SINE Alu -8 303 3 731 226 77 0 chr11 72429774 72429982 -78353571 - L1M4 LINE L1 -3388 2758 2535 495 273 95 33 chr11 72430001 72430305 -78353248 - L1MC5 LINE L1 -30 7931 7609 285 295 82 0 chr11 72431633 72431755 -78351798 + L2 LINE L2 3138 3269 -3 266 210 0 32 chr11 72433993 72434055 -78349498 + MIR SINE MIR 89 148 -60 1808 144 12 0 chr11 72434873 72435129 -78348424 - AluSx SINE Alu -53 259 1 230 293 123 0 chr11 72435259 72435365 -78348188 - MIR SINE MIR -1 261 143 202 192 0 19 chr11 72435415 72435467 -78348086 - MIR SINE MIR -102 160 110 672 106 0 0 chr11 72437255 72437349 -78346204 + AluJ/FLAM SINE Alu 2 95 -217 288 158 0 0 chr11 72437978 72438035 -78345518 + GA-rich Low_complexity Low_complexity 1 57 0 638 215 68 18 chr11 72438953 72439116 -78344437 + MER5A DNA MER1_type 14 184 -5 181 292 94 10 chr11 72441928 72442024 -78341529 - MIR SINE MIR -65 197 94 27 0 0 0 chr11 72444988 72445015 -78338538 + AT_rich Low_complexity Low_complexity 1 27 0 2209 114 17 0 chr11 72445684 72445857 -78337696 - AluSx SINE Alu -8 304 122 207 0 0 0 chr11 72445857 72445880 -78337673 + (TG)n Simple_repeat Simple_repeat 2 24 0 2209 114 17 0 chr11 72445880 72446005 -78337548 - AluSx SINE Alu -190 122 1 236 326 173 33 chr11 72446598 72446777 -78336776 + L2 LINE L2 2514 2667 -647 2456 78 0 3 chr11 72446777 72447070 -78336483 + AluSx SINE Alu 1 292 -20 236 326 173 33 chr11 72447070 72447289 -78336264 + L2 LINE L2 2667 2968 -346 1286 221 13 17 chr11 72447353 72447482 -78336071 + AluSx SINE Alu 1 129 -183 2402 93 0 0 chr11 72447482 72447783 -78335770 + AluSx SINE Alu 1 301 -11 1286 221 13 17 chr11 72447783 72447951 -78335602 + AluSx SINE Alu 129 297 -15 354 45 0 0 chr11 72447951 72447995 -78335558 + (GA)n Simple_repeat Simple_repeat 1 44 0 2155 126 13 3 chr11 72448036 72448346 -78335207 + AluSq SINE Alu 1 313 0 2368 103 0 0 chr11 72448459 72448760 -78334793 + AluSg SINE Alu 1 301 -9 1851 132 46 12 chr11 72448883 72449209 -78334344 - Tigger1 DNA MER2_type -4 2414 2078 1056 180 5 52 chr11 72449233 72449444 -78334109 - AluJo SINE Alu -11 301 101 2526 72 0 13 chr11 72449461 72449767 -78333786 - AluY SINE Alu -9 302 1 1498 118 16 4 chr11 72449770 72450015 -78333538 - Tigger1 DNA MER2_type -334 2084 1837 218 153 85 17 chr11 72450155 72450214 -78333339 + MIR3 SINE MIR 115 177 -31 238 179 36 18 chr11 72450257 72450313 -78333240 + MIR3 SINE MIR 123 179 -29 477 219 60 13 chr11 72450447 72450598 -78332955 + MIR SINE MIR 84 241 -21 2133 125 6 3 chr11 72450720 72451031 -78332522 - AluSx SINE Alu 0 312 1 2350 99 0 16 chr11 72451484 72451788 -78331765 - AluSx SINE Alu -13 299 1 382 287 92 35 chr11 72451788 72451962 -78331591 - L2 LINE L2 -9 3304 3121 2069 103 0 0 chr11 72455667 72455919 -78327634 - AluSg SINE Alu -58 252 1 883 51 17 8 chr11 72455930 72456048 -78327505 - AluY SINE Alu -3 308 190 267 333 42 24 chr11 72456083 72456248 -78327305 + L2 LINE L2 2811 2978 -294 757 215 110 4 chr11 72456279 72456507 -78327046 - L1MC4 LINE L1 0 8042 7791 2343 84 0 42 chr11 72456509 72456676 -78326877 - AluSc SINE Alu -11 298 148 270 0 0 0 chr11 72456676 72456706 -78326847 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2343 84 0 42 chr11 72456706 72456849 -78326704 - AluSc SINE Alu -161 148 1 1468 157 54 29 chr11 72456887 72457167 -78326386 + AluJo SINE Alu 5 291 -21 245 276 33 46 chr11 72457184 72457406 -78326147 + L1MEd LINE L1 1130 1387 -4918 850 179 62 80 chr11 72457447 72457721 -78325832 - MER58B DNA MER1_type -1 340 72 2279 115 0 10 chr11 72458852 72459164 -78324389 - AluSg1 SINE Alu 0 309 1 1050 132 29 5 chr11 72459165 72459369 -78324184 + Tigger2 DNA MER2_type 54 262 -2456 361 191 0 0 chr11 72459369 72459437 -78324116 + AluJ/FLAM SINE Alu 1 68 -234 666 157 0 0 chr11 72459437 72459539 -78324014 + AluJo/FRAM SINE Alu 149 250 -62 1386 135 19 28 chr11 72459539 72459754 -78323799 + AluJo SINE Alu 85 297 -15 12230 123 43 24 chr11 72459758 72460473 -78323080 + Tigger2 DNA MER2_type 339 1039 -1679 1883 183 0 7 chr11 72460473 72460774 -78322779 + AluJb SINE Alu 1 299 -13 12230 123 43 24 chr11 72460774 72460855 -78322698 + Tigger2 DNA MER2_type 1039 1117 -1601 1915 154 0 56 chr11 72460855 72461179 -78322374 + AluJb SINE Alu 1 306 -6 12230 123 43 24 chr11 72461179 72461522 -78322031 + Tigger2 DNA MER2_type 1117 1452 -1266 2214 137 0 0 chr11 72461522 72461821 -78321732 - AluSx SINE Alu -13 299 1 12230 123 43 24 chr11 72461821 72462530 -78321023 + Tigger2 DNA MER2_type 1452 2236 -482 2702 141 103 14 chr11 72462530 72463014 -78320539 + MER1A DNA MER1_type 1 527 0 12230 123 43 24 chr11 72463014 72463257 -78320296 + Tigger2 DNA MER2_type 2236 2473 -245 192 40 0 0 chr11 72463263 72463288 -78320265 + (TCCCC)n Simple_repeat Simple_repeat 1 25 0 477 182 18 64 chr11 72463288 72463398 -78320155 - AluJb SINE Alu -18 294 190 2265 109 3 0 chr11 72463415 72463700 -78319853 + AluSx SINE Alu 1 286 -26 180 0 0 0 chr11 72463700 72463720 -78319833 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1768 136 45 11 chr11 72463758 72463886 -78319667 + AluJb SINE Alu 1 123 -189 2276 108 0 7 chr11 72463886 72464181 -78319372 + AluSx SINE Alu 1 293 -19 1768 136 45 11 chr11 72464181 72464338 -78319215 + AluJb SINE Alu 123 296 -16 2321 86 0 0 chr11 72464340 72464643 -78318910 + AluSg SINE Alu 1 303 0 305 238 46 53 chr11 72464646 72464683 -78318870 + L1M4 LINE L1 2519 2555 -3591 2201 118 0 3 chr11 72464683 72464980 -78318573 + AluSq SINE Alu 1 296 -17 305 238 46 53 chr11 72464980 72465093 -78318460 + L1M4 LINE L1 2555 2668 -3478 276 163 20 0 chr11 72465093 72465142 -78318411 - AluS SINE Alu -229 73 24 449 182 11 0 chr11 72465143 72465231 -78318322 + L1M4 LINE L1 2686 2774 -3372 1320 161 24 43 chr11 72465232 72465487 -78318066 + AluJo SINE Alu 60 309 -3 338 208 0 59 chr11 72465520 72465621 -78317932 + L1M4 LINE L1 2791 2885 -3261 1930 148 11 3 chr11 72465631 72465915 -78317638 + AluJo SINE Alu 1 286 -26 1095 231 51 10 chr11 72466044 72466356 -78317197 + L1MC4 LINE L1 7452 7776 -266 2820 146 66 7 chr11 72466356 72466933 -78316620 + L1MB4 LINE L1 5562 6172 -8 1061 172 0 11 chr11 72466933 72467107 -78316446 - FRAM SINE Alu -7 169 1 2354 94 0 0 chr11 72467115 72467403 -78316150 - AluSg SINE Alu -21 289 2 900 209 0 11 chr11 72467435 72467617 -78315936 - AluJo SINE Alu 0 312 133 247 119 0 0 chr11 72467652 72467694 -78315859 - Alu SINE Alu -2 300 259 569 165 15 45 chr11 72467696 72467829 -78315724 - AluJo SINE Alu -173 139 11 930 179 19 0 chr11 72468142 72468304 -78315249 - MER20 DNA MER1_type 0 219 55 1059 96 0 7 chr11 72468305 72468441 -78315112 + AluSq/x SINE Alu 2 136 -177 2286 113 0 0 chr11 72468441 72468742 -78314811 + AluSx SINE Alu 1 301 -11 305 238 46 53 chr11 72468749 72468786 -78314767 + L1M4 LINE L1 2519 2555 -3591 2201 118 0 3 chr11 72468786 72469083 -78314470 + AluSq SINE Alu 1 296 -17 305 238 46 53 chr11 72469083 72469196 -78314357 + L1M4 LINE L1 2555 2668 -3478 276 163 20 0 chr11 72469196 72469245 -78314308 - AluS SINE Alu -229 73 24 449 182 11 0 chr11 72469246 72469334 -78314219 + L1M4 LINE L1 2686 2774 -3372 1156 174 32 47 chr11 72469335 72469588 -78313965 + AluJo SINE Alu 60 308 -4 636 204 28 109 chr11 72469621 72469732 -78313821 + L1M4 LINE L1 2791 2909 -3237 2017 143 10 3 chr11 72469732 72470026 -78313527 + AluJo SINE Alu 1 296 -16 636 204 28 109 chr11 72470026 72470198 -78313355 + L1M4 LINE L1 2909 3051 -3095 489 78 0 0 chr11 72470232 72470296 -78313257 - AluSc SINE Alu -47 252 189 544 157 0 0 chr11 72470298 72470381 -78313172 - AluS SINE Alu -227 85 3 2596 157 65 28 chr11 72470424 72470761 -78312792 + L1MB7 LINE L1 5565 5888 -295 1414 155 136 15 chr11 72470761 72471025 -78312528 + AluJo SINE Alu 1 296 -16 2596 157 65 28 chr11 72471025 72471242 -78312311 + L1MB7 LINE L1 5888 6131 -52 2033 154 0 0 chr11 72471242 72471534 -78312019 + AluJb SINE Alu 1 292 -20 2596 157 65 28 chr11 72471534 72471590 -78311963 + L1MB7 LINE L1 6131 6183 0 552 178 85 23 chr11 72471614 72471729 -78311824 + FLAM_A SINE Alu 6 132 -179 2302 85 7 0 chr11 72471729 72472033 -78311520 - AluSp SINE Alu 0 306 1 552 178 85 23 chr11 72472033 72472045 -78311508 + FLAM_A SINE Alu 132 142 -169 340 158 237 0 chr11 72472050 72472126 -78311427 + L1M4 LINE L1 3073 3166 -2980 1758 160 20 20 chr11 72472132 72472426 -78311127 + AluJo SINE Alu 1 294 -18 885 122 0 0 chr11 72472562 72472677 -78310876 - AluSq/x SINE Alu -198 115 1 496 292 49 0 chr11 72472677 72472862 -78310691 - L1MC4 LINE L1 -659 7383 7190 180 0 0 0 chr11 72472879 72472899 -78310654 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 697 156 0 0 chr11 72472900 72473009 -78310544 - FAM SINE Alu -23 162 54 2446 64 0 3 chr11 72473037 72473332 -78310221 - AluY SINE Alu -17 294 1 2177 95 3 14 chr11 72473338 72473623 -78309930 - AluSg SINE Alu -18 292 11 2193 133 3 0 chr11 72473653 72473955 -78309598 - AluSx SINE Alu -9 303 1 1346 125 58 121 chr11 72473955 72474249 -78309304 + MLT1B LTR MaLR 95 369 -21 1186 201 145 83 chr11 72474249 72474543 -78309010 - MSTD LTR MaLR 0 396 73 2312 119 0 0 chr11 72474543 72474839 -78308714 + AluSx SINE Alu 1 294 -18 1186 201 145 83 chr11 72474839 72474917 -78308636 - MSTD LTR MaLR -323 73 1 1346 125 58 121 chr11 72474917 72474935 -78308618 + MLT1B LTR MaLR 369 387 -3 247 200 0 53 chr11 72474936 72475011 -78308542 + L1MEc LINE L1 2223 2293 -4103 186 71 0 0 chr11 72475858 72475886 -78307667 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 359 173 93 13 chr11 72475896 72475971 -78307582 + L1MEc LINE L1 3290 3370 -2845 521 159 77 72 chr11 72475974 72476139 -78307414 + L1M4 LINE L1 4987 5150 -996 1989 128 0 4 chr11 72476139 72476420 -78307133 + AluSq SINE Alu 1 280 -33 252 59 0 0 chr11 72476420 72476454 -78307099 + (CA)n Simple_repeat Simple_repeat 1 34 0 521 159 77 72 chr11 72476454 72476494 -78307059 + L1M4 LINE L1 5149 5194 -952 1905 107 59 17 chr11 72476501 72476791 -78306762 + AluSx SINE Alu 1 302 -10 1494 152 7 29 chr11 72476843 72477119 -78306434 + AluJo SINE Alu 35 304 -8 200 330 30 10 chr11 72477248 72477348 -78306205 + L2 LINE L2 2923 3024 -248 2598 37 0 0 chr11 72478889 72479187 -78304366 + AluSg SINE Alu 1 298 -12 210 171 14 86 chr11 72479861 72479931 -78303622 + L2 LINE L2 445 509 -2805 2209 78 31 3 chr11 72480512 72480805 -78302748 - AluSp SINE Alu -12 301 1 2220 99 3 0 chr11 72480826 72481119 -78302434 - AluSx SINE Alu -9 303 10 391 127 42 0 chr11 72481130 72481201 -78302352 - U6 snRNA snRNA -33 74 1 2305 84 0 3 chr11 72485743 72486042 -78297511 + AluSp SINE Alu 1 298 -15 694 164 0 0 chr11 72486042 72486146 -78297407 - FRAM SINE Alu -34 142 39 24 0 0 0 chr11 72487530 72487554 -78295999 + GC_rich Low_complexity Low_complexity 1 24 0 205 248 0 89 chr11 72487751 72487852 -78295701 + C-rich Low_complexity Low_complexity 1 92 0 710 310 61 66 chr11 72488011 72488594 -78294959 + HAL1b LINE L1 240 385 -1199 233 161 13 11 chr11 72488595 72488818 -78294735 + AluSq SINE Alu 43 302 0 1746 137 50 0 chr11 72488903 72489181 -78294372 + AluJb SINE Alu 1 292 -20 2012 121 35 0 chr11 72489189 72489479 -78294074 + AluSx SINE Alu 3 302 -10 308 308 46 8 chr11 72490437 72490567 -78292986 - MIR3 SINE MIR -62 146 12 216 208 0 38 chr11 72492304 72492357 -78291196 + C-rich Low_complexity Low_complexity 3 53 0 327 280 36 77 chr11 72494036 72494204 -78289349 - MIR3 SINE MIR 0 208 48 196 297 44 22 chr11 72496722 72496813 -78286740 - MIR SINE MIR -113 149 57 462 271 159 12 chr11 72497656 72497826 -78285727 - MER91A DNA MER1_type 0 196 2 222 224 40 53 chr11 72498120 72498196 -78285357 + MIR SINE MIR 92 166 -96 390 212 0 54 chr11 72498526 72498634 -78284919 + MIR SINE MIR 58 161 -47 287 102 0 20 chr11 72499533 72499582 -78283971 + (TTTTC)n Simple_repeat Simple_repeat 2 49 0 685 214 15 0 chr11 72499596 72499727 -78283826 + FLAM_C SINE Alu 1 133 0 247 88 9 3 chr11 72499738 72499973 -78283580 + AluSp SINE Alu 1 313 0 1273 101 0 0 chr11 72499974 72500143 -78283410 + AluSc SINE Alu 133 301 -8 180 0 0 0 chr11 72500154 72500174 -78283379 + (A)n Simple_repeat Simple_repeat 1 20 0 2136 123 0 3 chr11 72500193 72500501 -78283052 + AluSx SINE Alu 1 307 -5 1639 167 11 14 chr11 72500516 72500797 -78282756 - AluJo SINE Alu -30 282 3 28 29 0 0 chr11 72501312 72501347 -78282206 + GC_rich Low_complexity Low_complexity 1 35 0 215 228 13 25 chr11 72501454 72501533 -78282020 + (CCG)n Simple_repeat Simple_repeat 2 79 0 398 299 9 9 chr11 72502781 72502888 -78280665 - L2 LINE L2 -5 3308 3202 409 292 67 0 chr11 72503882 72504002 -78279551 - MIR SINE MIR -63 145 18 23 0 0 0 chr11 72506621 72506644 -78276909 + GC_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr11 72506816 72506846 -78276707 + GC_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 72506994 72507023 -78276530 + GC_rich Low_complexity Low_complexity 1 29 0 2024 113 0 44 chr11 72507496 72507667 -78275886 - AluJo SINE Alu -8 304 127 2198 40 58 0 chr11 72507667 72507944 -78275609 - AluY SINE Alu -18 293 1 2289 93 7 0 chr11 72507944 72508254 -78275299 - AluSx SINE Alu 0 312 1 2024 113 0 44 chr11 72508254 72508399 -78275154 - AluJo SINE Alu -183 129 1 222 135 0 0 chr11 72508407 72508444 -78275109 - MIR SINE MIR -109 153 117 303 306 66 25 chr11 72508817 72509013 -78274540 + L2 LINE L2 2908 3111 -161 279 0 0 0 chr11 72510634 72510665 -78272888 + (CA)n Simple_repeat Simple_repeat 1 31 0 182 279 93 35 chr11 72510967 72511053 -78272500 - MIR SINE MIR -56 152 62 2218 104 7 0 chr11 72511803 72512101 -78271452 - AluSq SINE Alu -13 300 1 2149 138 0 0 chr11 72512170 72512481 -78271072 - AluSx SINE Alu -1 311 1 1241 231 3 43 chr11 72512515 72512839 -78270714 + AluJo SINE Alu 2 312 0 2401 83 3 3 chr11 72512855 72513168 -78270385 - AluSp SINE Alu 0 313 1 1965 136 0 3 chr11 72513179 72513474 -78270079 - AluSx SINE Alu -18 294 1 921 204 0 0 chr11 72513476 72513633 -78269920 - FRAM SINE Alu -9 157 1 25 31 0 0 chr11 72514287 72514319 -78269234 + GC_rich Low_complexity Low_complexity 1 32 0 278 336 26 18 chr11 72515374 72515487 -78268066 - L2 LINE L2 -2 3311 3198 1205 165 17 65 chr11 72515521 72515586 -78267967 + MER20 DNA MER1_type 1 68 -151 1820 117 33 27 chr11 72515586 72515885 -78267668 - AluSx SINE Alu -11 301 1 1940 124 3 42 chr11 72515885 72516054 -78267499 - AluSx SINE Alu -17 295 142 2012 130 0 25 chr11 72516054 72516370 -78267183 - AluSx SINE Alu -4 308 1 1940 124 3 42 chr11 72516370 72516506 -78267047 - AluSx SINE Alu -170 142 2 1205 165 17 65 chr11 72516506 72516669 -78266884 + MER20 DNA MER1_type 66 219 0 2241 97 13 0 chr11 72516803 72517103 -78266450 - AluSx SINE Alu -8 304 1 195 100 0 0 chr11 72517421 72517451 -78266102 + (TCCA)n Simple_repeat Simple_repeat 2 31 0 233 319 53 21 chr11 72517455 72517549 -78266004 - L2 LINE L2 0 3272 3176 458 226 115 55 chr11 72518025 72518242 -78265311 + L2 LINE L2 3043 3272 0 218 288 0 15 chr11 72520829 72520895 -78262658 + C-rich Low_complexity Low_complexity 2 66 0 189 74 0 0 chr11 72521989 72522016 -78261537 + (CAG)n Simple_repeat Simple_repeat 1 27 0 269 270 174 54 chr11 72522248 72522656 -78260897 + L2 LINE L2 2768 3223 -90 184 275 113 12 chr11 72528323 72528403 -78255150 + MIR SINE MIR 58 145 -63 221 226 0 48 chr11 72530055 72530139 -78253414 + C-rich Low_complexity Low_complexity 5 84 0 296 217 25 50 chr11 72530252 72530372 -78253181 + G-rich Low_complexity Low_complexity 3 119 0 23 54 0 0 chr11 72530428 72530465 -78253088 + GC_rich Low_complexity Low_complexity 1 37 0 2043 86 58 3 chr11 72530702 72530994 -78252559 - AluY SINE Alu -3 308 1 1298 124 28 32 chr11 72531051 72531268 -78252285 - AluJo SINE Alu -13 299 84 1891 138 0 7 chr11 72531271 72531567 -78251986 - AluSx SINE Alu -14 298 5 266 261 174 43 chr11 72532065 72532180 -78251373 - MIR SINE MIR -113 149 20 839 332 84 14 chr11 72532238 72532416 -78251137 + L2 LINE L2 2921 3085 -228 1728 146 35 3 chr11 72532416 72532704 -78250849 - AluJo SINE Alu -15 297 1 839 332 84 14 chr11 72532704 72532892 -78250661 + L2 LINE L2 3085 3313 0 571 122 0 0 chr11 72533152 72533234 -78250319 - AluSx SINE Alu -12 300 219 4541 73 78 43 chr11 72533235 72533306 -78250247 + LTR8 LTR ERV1 2 69 -622 2302 93 0 7 chr11 72533306 72533616 -78249937 - AluY SINE Alu -3 308 1 4541 73 78 43 chr11 72533616 72533802 -78249751 + LTR8 LTR ERV1 69 247 -444 2315 86 3 6 chr11 72533802 72534116 -78249437 + AluSp SINE Alu 1 313 0 4541 73 78 43 chr11 72534116 72534524 -78249029 + LTR8 LTR ERV1 247 691 0 1570 104 14 5 chr11 72534524 72534744 -78248809 - AluSx SINE Alu -90 222 1 615 245 25 44 chr11 72535378 72535537 -78248016 - MIR SINE MIR -87 175 20 2381 69 3 25 chr11 72535538 72535856 -78247697 - AluY SINE Alu 0 311 1 223 305 51 34 chr11 72536048 72536166 -78247387 - MIR SINE MIR -41 221 102 2456 64 0 0 chr11 72536553 72536849 -78246704 - AluSc SINE Alu -13 296 1 342 315 23 0 chr11 72537297 72537416 -78246137 - MIR SINE MIR -37 171 46 1546 164 59 7 chr11 72539748 72540035 -78243518 - AluJb SINE Alu -1 311 10 2075 65 98 0 chr11 72540152 72540429 -78243124 + AluSp SINE Alu 1 304 -9 358 273 73 18 chr11 72541812 72541922 -78241631 - MIR SINE MIR -105 157 42 292 296 156 15 chr11 72543970 72544105 -78239448 - MIR SINE MIR -89 173 20 2129 113 3 0 chr11 72544727 72545058 -78238495 + AluSx SINE Alu 1 312 0 218 200 0 0 chr11 72545681 72545721 -78237832 + L3 LINE CR1 1419 1458 -119 24 0 0 0 chr11 72545783 72545807 -78237746 + AT_rich Low_complexity Low_complexity 1 24 0 721 177 8 8 chr11 72545815 72545945 -78237608 + FLAM_C SINE Alu 2 131 -2 320 273 68 0 chr11 72545996 72546084 -78237469 + L1MEd LINE L1 113 206 -5913 2165 111 7 0 chr11 72546419 72546717 -78236836 + AluSx SINE Alu 1 300 -12 1908 141 10 7 chr11 72546929 72547227 -78236326 + AluSx SINE Alu 1 299 -13 382 232 96 20 chr11 72547236 72547267 -78236286 + L1MEd LINE L1 890 917 -5202 243 0 0 0 chr11 72547267 72547294 -78236259 + (CA)n Simple_repeat Simple_repeat 2 28 0 382 232 96 20 chr11 72547294 72547451 -78236102 + L1MEd LINE L1 917 1096 -5023 2250 91 0 10 chr11 72547451 72547749 -78235804 + AluY SINE Alu 1 295 -16 972 206 7 65 chr11 72547749 72547996 -78235557 + L1ME1 LINE L1 5552 5781 -385 2237 102 0 10 chr11 72547996 72548299 -78235254 - AluSg SINE Alu -10 300 1 972 206 7 65 chr11 72548299 72548342 -78235211 + L1ME1 LINE L1 5781 5825 -341 788 122 0 0 chr11 72548343 72548450 -78235103 + FLAM_C SINE Alu 1 107 -36 708 167 0 58 chr11 72548459 72548597 -78234956 - FLAM_C SINE Alu -3 130 1 1530 212 3 10 chr11 72548598 72548895 -78234658 - AluJb SINE Alu -17 295 1 538 259 66 14 chr11 72548895 72549107 -78234446 - L1MC/D LINE L1 -2045 5763 5541 2125 113 3 0 chr11 72549475 72549766 -78233787 + AluSx SINE Alu 1 292 -20 1601 171 23 29 chr11 72549800 72550110 -78233443 - AluJb SINE Alu -4 308 1 516 311 120 22 chr11 72551183 72551642 -78231911 + L2 LINE L2 2015 2518 -796 2285 85 3 22 chr11 72551668 72551984 -78231569 - AluSp SINE Alu -3 310 1 1683 185 10 32 chr11 72552127 72552440 -78231113 + AluJo SINE Alu 1 306 -6 198 0 0 0 chr11 72552440 72552462 -78231091 + (TA)n Simple_repeat Simple_repeat 2 23 0 24 0 0 0 chr11 72552576 72552600 -78230953 + AT_rich Low_complexity Low_complexity 1 24 0 2010 141 0 0 chr11 72552631 72552922 -78230631 + AluSx SINE Alu 1 291 -21 506 299 114 5 chr11 72553323 72553524 -78230029 + MIR SINE MIR 32 254 -8 385 318 82 0 chr11 72553570 72553765 -78229788 + L2 LINE L2 1438 1648 -1666 2209 271 74 19 chr11 72553765 72554773 -78228780 + L2 LINE L2 2144 3214 -99 413 257 158 18 chr11 72554802 72555013 -78228540 + MIR SINE MIR 8 243 -19 2489 61 0 6 chr11 72555241 72555554 -78227999 - AluY SINE Alu 0 311 1 2018 72 61 4 chr11 72555565 72555844 -78227709 - AluY SINE Alu -16 295 1 2414 58 0 3 chr11 72557010 72557304 -78226249 + AluY SINE Alu 1 293 -18 268 288 27 27 chr11 72559104 72559215 -78224338 - MIR SINE MIR 0 262 152 2012 115 30 3 chr11 72563542 72563838 -78219715 - AluSx SINE Alu -8 304 1 249 281 56 50 chr11 72563946 72564048 -78219505 + L2 LINE L2 1890 1995 -1319 1720 126 7 33 chr11 72564048 72564182 -78219371 - AluJb SINE Alu -49 263 138 2280 87 3 10 chr11 72564182 72564493 -78219060 - AluSc SINE Alu 0 309 1 1720 126 7 33 chr11 72564493 72564628 -78218925 - AluJb SINE Alu -174 138 1 249 281 56 50 chr11 72564628 72564685 -78218868 + L2 LINE L2 1995 2050 -1264 1847 127 10 33 chr11 72564755 72565062 -78218491 + AluSx SINE Alu 1 300 -12 2056 152 0 0 chr11 72565107 72565417 -78218136 + AluSx SINE Alu 1 310 -2 2451 77 0 0 chr11 72565492 72565802 -78217751 + AluY SINE Alu 2 311 0 2257 69 10 0 chr11 72565828 72566116 -78217437 - AluSp SINE Alu -22 291 1 237 272 96 88 chr11 72566199 72566324 -78217229 - L2 LINE L2 0 3313 3188 205 352 65 0 chr11 72566454 72566562 -78216991 - L2 LINE L2 0 3272 3158 954 133 0 172 chr11 72567197 72567430 -78216123 + 7SK RNA RNA 1 193 0 230 344 44 0 chr11 72567565 72567655 -78215898 - MIR SINE MIR -48 214 121 2102 108 10 0 chr11 72568077 72568365 -78215188 + AluSx SINE Alu 1 291 -21 2527 59 0 0 chr11 72568369 72568674 -78214879 + AluY SINE Alu 1 305 -6 552 305 72 63 chr11 72570571 72571129 -78212424 - L2 LINE L2 -1074 2240 1678 252 86 0 0 chr11 72573681 72573716 -78209837 + (T)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr11 72575397 72575417 -78208136 + (CA)n Simple_repeat Simple_repeat 2 21 0 184 268 197 14 chr11 72576063 72576134 -78207419 + MIR3 SINE MIR 14 97 -111 204 146 42 42 chr11 72577352 72577400 -78206153 + C-rich Low_complexity Low_complexity 3 50 0 285 51 0 0 chr11 72577402 72577441 -78206112 + (CGGGGG)n Simple_repeat Simple_repeat 5 43 0 22 0 0 0 chr11 72577627 72577649 -78205904 + GC_rich Low_complexity Low_complexity 1 22 0 197 139 23 0 chr11 72577730 72577773 -78205780 + (CCCGG)n Simple_repeat Simple_repeat 5 48 0 211 204 20 0 chr11 72577781 72577830 -78205723 + (CCCG)n Simple_repeat Simple_repeat 2 51 0 215 278 10 21 chr11 72577879 72577976 -78205577 + C-rich Low_complexity Low_complexity 6 101 0 23 33 0 0 chr11 72578204 72578234 -78205319 + GC_rich Low_complexity Low_complexity 1 30 0 222 229 0 21 chr11 72580052 72580100 -78203453 + CT-rich Low_complexity Low_complexity 4 50 0 210 224 0 20 chr11 72580226 72580275 -78203278 + C-rich Low_complexity Low_complexity 5 52 0 201 95 24 71 chr11 72580419 72580461 -78203092 + (GGGAGA)n Simple_repeat Simple_repeat 4 43 0 360 348 0 22 chr11 72580593 72580774 -78202779 + G-rich Low_complexity Low_complexity 1 177 0 1516 137 54 43 chr11 72581629 72581907 -78201646 + AluJo SINE Alu 14 294 -18 194 179 269 15 chr11 72582134 72582201 -78201352 + MIR SINE MIR 33 116 -92 2452 48 0 23 chr11 72582930 72583239 -78200314 - AluY SINE Alu -9 302 1 563 303 21 27 chr11 72583239 72583427 -78200126 - MIR SINE MIR -67 195 9 294 73 0 0 chr11 72584031 72584072 -78199481 + (TG)n Simple_repeat Simple_repeat 1 41 0 215 264 33 44 chr11 72584780 72584871 -78198682 + MIR SINE MIR 58 147 -61 1521 154 70 26 chr11 72584925 72585081 -78198472 - AluJb SINE Alu 0 307 159 2176 86 43 10 chr11 72585081 72585383 -78198170 - AluSx SINE Alu 0 312 1 1521 154 70 26 chr11 72585383 72585521 -78198032 - AluJb SINE Alu -148 159 1 1148 117 6 0 chr11 72585979 72586150 -78197403 - AluSg/x SINE Alu -10 300 129 1323 127 45 18 chr11 72586739 72586959 -78196594 + AluJo SINE Alu 83 308 -4 427 265 88 16 chr11 72587099 72587320 -78196233 - MIR SINE MIR -12 250 15 2474 34 0 3 chr11 72588061 72588354 -78195199 + AluY SINE Alu 1 292 -19 682 173 0 0 chr11 72588633 72588743 -78194810 - AluSx SINE Alu -14 298 189 2426 64 0 0 chr11 72588743 72589040 -78194513 + AluY SINE Alu 1 297 -14 1498 102 0 19 chr11 72589040 72589243 -78194310 - AluSx SINE Alu -111 201 1 289 251 223 74 chr11 72589465 72589640 -78193913 - MIR SINE MIR -46 216 16 278 341 0 11 chr11 72589692 72589783 -78193770 - L2 LINE L2 -1 3312 3223 181 305 37 12 chr11 72590151 72590233 -78193320 + L2 LINE L2 2985 3068 -204 626 334 39 6 chr11 72590325 72590636 -78192917 + L2 LINE L2 2832 3152 -161 1753 148 37 4 chr11 72590636 72590906 -78192647 - AluJb SINE Alu -33 279 1 862 164 0 0 chr11 72591124 72591264 -78192289 - FLAM_C SINE Alu -3 140 1 1247 124 6 0 chr11 72591295 72591473 -78192080 + AluJb SINE Alu 129 307 -5 246 306 182 8 chr11 72591495 72591616 -78191937 - MIR3 SINE MIR -34 174 33 342 251 87 87 chr11 72591898 72592093 -78191460 - MIR3 SINE MIR -7 201 7 227 343 0 0 chr11 72592212 72592279 -78191274 - L2 LINE L2 -73 3199 3133 2265 90 0 0 chr11 72592751 72593039 -78190514 - AluSx SINE Alu -24 288 1 943 185 16 5 chr11 72593042 72593226 -78190327 - AluSg/x SINE Alu -7 303 118 750 323 101 44 chr11 72593227 72593310 -78190243 - L2 LINE L2 -8 3264 3187 1745 173 0 3 chr11 72593310 72593626 -78189927 + AluJo SINE Alu 2 316 0 2202 115 0 0 chr11 72593631 72593936 -78189617 + AluSx SINE Alu 1 305 -7 750 323 101 44 chr11 72593936 72594627 -78188926 - L2 LINE L2 -88 3184 2438 1338 93 6 0 chr11 72595087 72595269 -78188284 - AluSc SINE Alu -19 290 108 26 30 0 0 chr11 72595535 72595568 -78187985 + AT_rich Low_complexity Low_complexity 1 33 0 246 306 182 8 chr11 72595740 72595861 -78187692 - MIR3 SINE MIR -34 174 33 342 251 87 87 chr11 72596143 72596338 -78187215 - MIR3 SINE MIR -7 201 7 227 343 0 0 chr11 72596457 72596524 -78187029 - L2 LINE L2 -73 3199 3133 2123 104 3 0 chr11 72596996 72597283 -78186270 - AluSx SINE Alu -24 288 1 249 281 56 50 chr11 72597353 72597410 -78186143 - L2 LINE L2 -1264 2050 1995 1720 126 7 33 chr11 72597410 72597545 -78186008 + AluJb SINE Alu 1 127 -185 2257 90 3 10 chr11 72597545 72597856 -78185697 + AluSc SINE Alu 1 309 0 1720 126 7 33 chr11 72597856 72597990 -78185563 + AluJb SINE Alu 127 263 -49 249 281 56 50 chr11 72597990 72598092 -78185461 - L2 LINE L2 -1319 1995 1890 2012 115 30 3 chr11 72598200 72598496 -78185057 + AluSx SINE Alu 1 304 -8 268 288 27 27 chr11 72602826 72602937 -78180616 + MIR SINE MIR 152 262 0 226 243 68 0 chr11 72603631 72603705 -78179848 - L2 LINE L2 -211 3061 2983 2283 89 0 0 chr11 72604537 72604828 -78178725 + AluSx SINE Alu 1 291 -21 1007 170 0 22 chr11 72604836 72605010 -78178543 + FRAM SINE Alu 1 169 -143 3085 151 64 5 chr11 72605010 72605587 -78177966 - L1MB4 LINE L1 -8 6172 5562 1256 248 41 75 chr11 72605599 72606004 -78177549 - L1MC4 LINE L1 -282 7760 7380 2298 110 0 0 chr11 72606004 72606314 -78177239 - AluSx SINE Alu -2 310 1 1256 248 41 75 chr11 72606314 72606493 -78177060 - L1MC4 LINE L1 -662 7380 7196 736 187 0 15 chr11 72606493 72606646 -78176907 - FAM SINE Alu 0 49 1 5644 154 51 74 chr11 72606712 72608046 -78175507 + SVA Other Other 83 1385 -1 2748 134 77 42 chr11 72608236 72609030 -78174523 - pTR5 LTR ERV1 -128 2220 119 615 245 25 44 chr11 72609132 72609291 -78174262 + MIR SINE MIR 20 175 -87 1570 104 14 5 chr11 72609925 72610145 -78173408 + AluSx SINE Alu 1 222 -90 2606 76 98 5 chr11 72610145 72610553 -78173000 - LTR8 LTR ERV1 0 691 246 2315 86 3 6 chr11 72610553 72610867 -78172686 - AluSp SINE Alu 0 313 1 1164 134 42 46 chr11 72610925 72611142 -78172411 - AluJo SINE Alu -13 299 84 1835 141 0 10 chr11 72611145 72611442 -78172111 - AluSx SINE Alu -14 298 5 266 261 174 43 chr11 72611940 72612055 -78171498 - MIR SINE MIR -113 149 20 826 335 84 14 chr11 72612113 72612291 -78171262 + L2 LINE L2 2921 3085 -228 1687 153 35 3 chr11 72612291 72612579 -78170974 - AluJo SINE Alu -15 297 1 826 335 84 14 chr11 72612579 72612767 -78170786 + L2 LINE L2 3085 3313 0 2453 60 0 3 chr11 72613028 72613329 -78170224 - AluY SINE Alu -11 300 1 2173 72 55 0 chr11 72614495 72614785 -78168768 + AluY SINE Alu 1 306 -5 1914 99 64 3 chr11 72614785 72615068 -78168485 + AluSg SINE Alu 1 300 -10 22 0 0 0 chr11 72618372 72618394 -78165159 + AT_rich Low_complexity Low_complexity 1 22 0 373 299 117 7 chr11 72619157 72619311 -78164242 - L3 LINE CR1 -112 1465 1295 346 316 136 24 chr11 72619349 72619555 -78163998 - MIR SINE MIR -11 251 23 330 130 0 0 chr11 72620807 72620861 -78162692 - AluY SINE Alu -121 180 127 5328 117 11 18 chr11 72620886 72621595 -78161958 + MER66B-int LTR ERV1 5829 6532 -144 1837 111 23 99 chr11 72621595 72621937 -78161616 - AluYb8 SINE Alu -2 316 1 5328 117 11 18 chr11 72621937 72622081 -78161472 + MER66B-int LTR ERV1 6532 6676 0 2766 147 2 95 chr11 72622081 72622160 -78161393 + MER66B LTR ERV1 1 86 -400 2076 120 3 0 chr11 72622160 72622452 -78161101 + AluSx SINE Alu 2 294 -18 2766 147 2 95 chr11 72622452 72622796 -78160757 + MER66B LTR ERV1 86 366 -120 2146 108 0 13 chr11 72622796 72623102 -78160451 + AluSx SINE Alu 1 302 -10 2766 147 2 95 chr11 72623102 72623213 -78160340 + MER66B LTR ERV1 366 486 0 650 160 28 9 chr11 72623213 72623319 -78160234 - FLAM_C SINE Alu -35 108 1 314 346 97 16 chr11 72623448 72623769 -78159784 + L1ME LINE L1 5296 5642 -520 1143 158 77 106 chr11 72624314 72624464 -78159089 + AluJo SINE Alu 1 139 -163 261 0 0 0 chr11 72624464 72624493 -78159060 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1143 158 77 106 chr11 72624493 72624653 -78158900 + AluJo SINE Alu 139 302 0 543 301 31 16 chr11 72624655 72624944 -78158609 + L2 LINE L2 2779 3070 -243 207 245 75 66 chr11 72625064 72625170 -78158383 - MIR3 SINE MIR -95 113 7 1890 102 66 0 chr11 72625193 72625467 -78158086 - AluSx SINE Alu -20 292 1 244 233 14 164 chr11 72625467 72625513 -78158040 - L2 LINE L2 -529 2785 2734 2334 87 3 0 chr11 72625513 72625822 -78157731 - AluSx SINE Alu -2 310 1 244 233 14 164 chr11 72625822 72625921 -78157632 - L2 LINE L2 -580 2734 2662 * 281 265 92 10 chr11 72625911 72626009 -78157544 + MIR SINE MIR 76 181 -81 270 236 9 47 chr11 72626279 72626385 -78157168 + G-rich Low_complexity Low_complexity 4 105 0 260 267 122 61 chr11 72628382 72628513 -78155040 - MIR SINE MIR -76 186 48 1923 94 80 11 chr11 72629235 72629521 -78154032 - AluSx SINE Alu -6 306 1 1721 150 27 31 chr11 72629522 72629816 -78153737 - AluJo SINE Alu -17 295 3 816 168 0 28 chr11 72629820 72629963 -78153590 - AluJo SINE Alu -173 139 1 420 264 242 11 chr11 72630012 72630289 -78153264 + L2 LINE L2 2972 3312 -1 183 184 0 0 chr11 72630450 72630488 -78153065 + C-rich Low_complexity Low_complexity 6 43 0 222 222 0 62 chr11 72630801 72630882 -78152671 + G-rich Low_complexity Low_complexity 2 77 0 212 231 0 0 chr11 72631387 72631439 -78152114 - MIR SINE MIR -106 102 51 837 120 0 30 chr11 72631916 72632049 -78151504 + FLAM_C SINE Alu 1 129 -4 214 256 384 2 chr11 72632060 72632206 -78151347 - MIR SINE MIR -31 231 42 407 193 187 32 chr11 72632534 72632616 -78150937 - MER5C DNA MER1_type 0 324 256 1692 146 33 7 chr11 72632616 72632918 -78150635 + AluJb SINE Alu 1 310 -2 407 193 187 32 chr11 72632918 72632956 -78150597 - MER5C DNA MER1_type -68 256 225 2303 78 3 7 chr11 72632956 72633252 -78150301 + AluSg SINE Alu 1 295 -15 407 193 187 32 chr11 72633252 72633317 -78150236 - MER5C DNA MER1_type -99 225 109 881 132 0 0 chr11 72633414 72633550 -78150003 - AluSg/x SINE Alu -2 308 173 508 132 0 0 chr11 72633551 72633619 -78149934 - AluS SINE Alu -243 70 3 2395 158 64 27 chr11 72633662 72633999 -78149554 + L1MB7 LINE L1 5565 5888 -295 1330 155 136 15 chr11 72633999 72634263 -78149290 + AluJo SINE Alu 1 296 -16 2395 158 64 27 chr11 72634263 72634480 -78149073 + L1MB7 LINE L1 5888 6131 -52 1954 154 0 0 chr11 72634480 72634772 -78148781 + AluJb SINE Alu 1 292 -20 2395 158 64 27 chr11 72634772 72634828 -78148725 + L1MB7 LINE L1 6131 6183 0 595 186 85 23 chr11 72634853 72634968 -78148585 + FLAM_A SINE Alu 6 132 -179 2190 85 7 0 chr11 72634968 72635272 -78148281 - AluSp SINE Alu 0 306 1 595 186 85 23 chr11 72635272 72635284 -78148269 + FLAM_A SINE Alu 132 142 -169 549 211 114 24 chr11 72635289 72635371 -78148182 + L1 LINE L1 3073 3146 -3000 1744 160 20 17 chr11 72635371 72635671 -78147882 + AluJo SINE Alu 1 301 -11 462 36 0 0 chr11 72635672 72635728 -78147825 + (CA)n Simple_repeat Simple_repeat 2 57 0 549 211 114 24 chr11 72635728 72635817 -78147736 + L1 LINE L1 3146 3226 -2920 2017 130 14 3 chr11 72635817 72636109 -78147444 + AluSx SINE Alu 1 295 -17 549 211 114 24 chr11 72636109 72636232 -78147321 + L1 LINE L1 3226 3397 -2749 1590 178 31 7 chr11 72636256 72636543 -78147010 - AluJb SINE Alu -18 294 1 567 197 69 20 chr11 72636553 72636750 -78146803 + L1 LINE L1 4256 4463 -1678 751 187 0 50 chr11 72636750 72636889 -78146664 + FLAM_C SINE Alu 1 132 -1 434 216 106 92 chr11 72636916 72637047 -78146506 + L1M4 LINE L1 4716 4853 -1293 2341 74 0 7 chr11 72637047 72637346 -78146207 - AluY SINE Alu -14 297 1 434 216 106 92 chr11 72637346 72637432 -78146121 + L1M4 LINE L1 4853 4936 -1210 443 173 64 82 chr11 72637432 72637470 -78146083 + L1ME LINE L1 3194 3231 -2915 2070 108 4 0 chr11 72637470 72637796 -78145757 + AluSg SINE Alu 1 327 0 443 173 64 82 chr11 72637796 72637864 -78145689 + L1ME LINE L1 3231 3301 -2845 529 155 77 72 chr11 72637867 72638032 -78145521 + L1ME LINE L1 4987 5150 -996 1989 128 0 4 chr11 72638032 72638313 -78145240 + AluSq SINE Alu 1 280 -33 252 59 0 0 chr11 72638313 72638347 -78145206 + (CA)n Simple_repeat Simple_repeat 1 34 0 529 155 77 72 chr11 72638347 72638387 -78145166 + L1ME LINE L1 5149 5194 -952 * 2712 124 72 8 chr11 72638380 72638394 -78145159 + L1 LINE L1 4627 4639 -1507 2132 103 0 17 chr11 72638394 72638695 -78144858 + AluSx SINE Alu 1 296 -16 2712 124 72 8 chr11 72638695 72639206 -78144347 + L1 LINE L1 4639 5186 -960 976 196 0 0 chr11 72639214 72639372 -78144181 + FRAM SINE Alu 1 158 -8 959 224 8 16 chr11 72639372 72639618 -78143935 + L1ME LINE L1 5552 5795 -371 198 0 0 0 chr11 72639618 72639640 -78143913 + (T)n Simple_repeat Simple_repeat 1 22 0 212 231 0 0 chr11 72639948 72640000 -78143553 - MIR SINE MIR -106 102 51 968 96 0 22 chr11 72640477 72640613 -78142940 + FLAM_C SINE Alu 1 133 0 225 252 338 9 chr11 72640619 72640765 -78142788 - MIR SINE MIR -31 231 42 346 174 215 41 chr11 72641093 72641175 -78142378 - MER5C DNA MER1_type 0 324 258 1692 146 33 7 chr11 72641175 72641477 -78142076 + AluJb SINE Alu 1 310 -2 346 174 215 41 chr11 72641477 72641515 -78142038 - MER5C DNA MER1_type -66 258 183 2161 88 10 20 chr11 72641515 72641820 -78141733 + AluSg SINE Alu 1 302 -8 324 368 92 28 chr11 72641967 72642320 -78141233 - L2 LINE L2 -10 3262 2933 1020 209 9 24 chr11 72642320 72642530 -78141023 - MER6B DNA MER2_type -3 207 1 324 368 92 28 chr11 72642530 72642695 -78140858 - L2 LINE L2 -339 2933 2600 2339 84 0 0 chr11 72642701 72642998 -78140555 + AluSx SINE Alu 1 297 -15 323 326 83 0 chr11 72643403 72643535 -78140018 - MIR3 SINE MIR -35 173 31 * 680 251 218 33 chr11 72643533 72643863 -78139690 - L2 LINE L2 -2 3311 2921 1113 143 83 145 chr11 72643924 72644310 -78139243 + LTR1 LTR ERV1 12 373 -412 1974 98 0 0 chr11 72644310 72644566 -78138987 + AluSx SINE Alu 47 302 -10 1376 124 23 0 chr11 72644672 72644889 -78138664 - AluSg/x SINE Alu -20 292 71 729 179 62 80 chr11 72644995 72645269 -78138284 + MER58B DNA MER1_type 72 340 -1 240 300 21 59 chr11 72645310 72645535 -78138018 - L1MEd LINE L1 -4862 1257 1127 1666 143 45 21 chr11 72645547 72645833 -78137720 - AluJo SINE Alu -19 293 1 390 342 87 0 chr11 72646966 72647115 -78136438 - MIR SINE MIR -55 207 46 306 301 103 7 chr11 72647578 72647724 -78135829 - MIR SINE MIR -24 238 79 338 350 140 23 chr11 72647932 72648324 -78135229 + L2 LINE L2 2422 2859 -455 3556 134 52 17 chr11 72648436 72648469 -78135084 + LTR26 LTR ERV1 4 34 -569 8062 51 9 0 chr11 72648469 72649429 -78134124 + LTR5 LTR ERVK 1 969 0 3556 134 52 17 chr11 72649429 72649975 -78133578 + LTR26 LTR ERV1 34 603 0 2075 120 7 0 chr11 72650230 72650530 -78133023 - AluSg SINE Alu -8 302 1 339 225 101 19 chr11 72650585 72650711 -78132842 - L1MCa LINE L1 -1339 6983 1994 804 164 121 0 chr11 72650712 72650852 -78132701 - FRAM SINE Alu -25 151 1 823 138 0 0 chr11 72650866 72650982 -78132571 + AluJb SINE Alu 1 116 -196 205 246 82 0 chr11 72651353 72651414 -78132139 - MIR SINE MIR -112 96 31 3234 150 19 88 chr11 72651512 72651554 -78131999 - L1MB3 LINE L1 -6 6177 6134 350 0 44 0 chr11 72651554 72651599 -78131954 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1958 123 3 3 chr11 72651599 72651884 -78131669 - AluSx SINE Alu -27 285 1 3234 150 19 88 chr11 72651884 72651936 -78131617 - L1MB3 LINE L1 -48 6135 6081 4748 51 5 5 chr11 72651936 72652527 -78131026 + LTR10C LTR ERV1 1 591 0 3234 150 19 88 chr11 72652527 72653010 -78130543 - L1MB3 LINE L1 -102 6081 5566 1915 104 37 0 chr11 72653010 72653278 -78130275 + AluSx SINE Alu 1 278 -34 237 33 0 0 chr11 72653279 72653309 -78130244 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 3234 150 19 88 chr11 72653309 72653425 -78130128 - L1MB3 LINE L1 -617 5566 5540 1891 143 3 13 chr11 72653425 72653733 -78129820 + AluJo SINE Alu 1 305 -7 3234 150 19 88 chr11 72653733 72653844 -78129709 - L1MB3 LINE L1 -643 5540 5423 451 287 26 0 chr11 72654190 72654305 -78129248 - MIR SINE MIR -76 186 69 349 304 157 11 chr11 72654317 72654508 -78129045 - L2 LINE L2 -73 3199 2981 425 295 192 19 chr11 72655870 72656491 -78127062 - L2 LINE L2 -22 3291 2550 348 308 77 13 chr11 72657642 72657876 -78125677 - L2 LINE L2 -182 3090 2842 217 298 15 84 chr11 72658392 72658523 -78125030 - MIR3 SINE MIR -54 154 33 228 194 28 56 chr11 72658804 72658876 -78124677 - MIR SINE MIR -72 136 67 210 128 0 0 chr11 72659609 72659648 -78123905 + (CCCCG)n Simple_repeat Simple_repeat 5 43 0 195 42 0 0 chr11 72659923 72659947 -78123606 + (CCCCG)n Simple_repeat Simple_repeat 4 27 0 21 57 0 0 chr11 72660064 72660099 -78123454 + GC_rich Low_complexity Low_complexity 1 35 0 246 259 0 0 chr11 72660254 72660312 -78123241 + MIR SINE MIR 87 144 -118 222 364 23 0 chr11 72660659 72660747 -78122806 - MIR SINE MIR -113 149 60 193 241 0 96 chr11 72661274 72661357 -78122196 - L2 LINE L2 -328 2985 2911 237 315 87 24 chr11 72662059 72662186 -78121367 - MIR SINE MIR -39 223 89 226 293 90 45 chr11 72662372 72662505 -78121048 - L2 LINE L2 -16 3256 3118 1392 118 5 5 chr11 72662852 72663073 -78120480 - pTR5 LTR ERV1 -2046 392 172 328 255 10 0 chr11 72663076 72663174 -78120379 - LTR30 LTR ERV1 -80 642 544 1489 141 110 40 chr11 72663174 72663500 -78120053 - pTR5 LTR ERV1 -413 2025 1677 * 4293 71 10 5 chr11 72663499 72664207 -78119346 - HERV17 LTR ERV1 -12 8387 504 304 208 14 0 chr11 72664192 72664264 -78119289 - HERV17 LTR ERV1 -824 7575 7503 * 449 157 280 0 chr11 72664262 72664498 -78119055 - HERV17 LTR ERV1 -5755 1141 703 34161 93 28 28 chr11 72664499 72671043 -78112510 - HERV17 LTR ERV1 0 2438 17 1705 161 26 13 chr11 72671197 72671501 -78112052 + AluSx SINE Alu 1 308 -4 231 200 12 71 chr11 72675914 72675999 -78107554 + G-rich Low_complexity Low_complexity 2 81 0 181 330 107 0 chr11 72676176 72676279 -78107274 + L2 LINE L2 2943 3056 -216 3620 191 102 13 chr11 72676323 72677523 -78106030 - L1MA7 LINE L1 0 6291 5016 285 267 124 0 chr11 72677984 72678089 -78105464 - MIR3 SINE MIR -7 201 84 208 245 0 0 chr11 72680139 72680192 -78103361 + (CA)n Simple_repeat Simple_repeat 1 53 0 205 277 20 30 chr11 72680290 72680391 -78103162 + (CCCG)n Simple_repeat Simple_repeat 2 101 0 560 237 180 14 chr11 72682030 72682241 -78101312 + MIR SINE MIR 15 260 -2 2194 93 0 0 chr11 72682251 72682551 -78101002 + AluSg SINE Alu 1 300 0 1949 142 0 31 chr11 72682558 72682876 -78100677 + AluSx SINE Alu 3 310 -2 207 0 0 0 chr11 72683584 72683607 -78099946 + (CA)n Simple_repeat Simple_repeat 1 23 0 523 328 91 18 chr11 72685017 72685346 -78098207 + L2 LINE L2 2920 3272 0 233 301 119 17 chr11 72685391 72685567 -78097986 - L2 LINE L2 -154 3118 2925 203 211 0 0 chr11 72686195 72686233 -78097320 - MIR SINE MIR -117 145 108 183 248 88 48 chr11 72686200 72686325 -78097228 - MIR3 SINE MIR -67 141 12 * 228 160 0 80 chr11 72687002 72687052 -78096501 - MIR SINE MIR -56 152 107 385 278 6 11 chr11 72688357 72688537 -78095016 + (TG)n Simple_repeat Simple_repeat 1 179 0 251 104 0 42 chr11 72688538 72688586 -78094967 + LTR15-int LTR ERV1 1111 1156 -5442 511 244 6 6 chr11 72688611 72688791 -78094762 + (TG)n Simple_repeat Simple_repeat 1 180 0 230 273 68 0 chr11 72688800 72688888 -78094665 + MIR SINE MIR 46 139 -69 232 245 38 0 chr11 72689005 72689058 -78094495 - MIR3 SINE MIR -45 163 109 873 161 11 23 chr11 72689063 72689237 -78094316 + LTR45B LTR ERV1 222 393 -96 2477 44 0 0 chr11 72689773 72690066 -78093487 - AluY SINE Alu -17 294 2 1374 162 6 89 chr11 72690449 72690592 -78092961 + AluJo SINE Alu 1 154 -177 1949 100 68 0 chr11 72690592 72690871 -78092682 + AluSq SINE Alu 5 302 -11 1374 162 6 89 chr11 72690871 72691084 -78092469 + AluJo SINE Alu 154 331 0 1676 164 52 0 chr11 72691800 72692087 -78091466 - AluJo SINE Alu -10 302 1 31 0 0 0 chr11 72692249 72692280 -78091273 + AT_rich Low_complexity Low_complexity 1 31 0 600 100 0 0 chr11 72692280 72692360 -78091193 + MADE1 DNA Mariner 1 80 0 816 153 0 0 chr11 72692362 72692480 -78091073 - AluJb SINE Alu -191 121 4 2033 127 13 3 chr11 72692834 72693142 -78090411 + AluSq SINE Alu 1 311 -2 357 254 0 45 chr11 72693207 72693317 -78090236 + LTR15-int LTR ERV1 2776 2880 -3796 1262 215 63 30 chr11 72693471 72693845 -78089708 + LTR15-int LTR ERV1 1197 1557 -4774 2431 50 0 35 chr11 72693845 72694162 -78089391 - AluY SINE Alu -5 306 1 1262 215 63 30 chr11 72694162 72694415 -78089138 + LTR15-int LTR ERV1 1557 3120 -3211 1034 223 105 98 chr11 72694462 72694646 -78088907 + LTR15-int LTR ERV1 1488 1669 -4929 1732 149 3 44 chr11 72694646 72694967 -78088586 + AluJb SINE Alu 5 312 0 1034 223 105 98 chr11 72694967 72695443 -78088110 + LTR15-int LTR ERV1 1669 2140 -4458 1857 118 27 24 chr11 72695443 72695739 -78087814 - AluSq SINE Alu -16 297 1 1034 223 105 98 chr11 72695739 72695833 -78087720 + LTR15-int LTR ERV1 2140 2232 -4366 2137 109 0 3 chr11 72695833 72696135 -78087418 + AluY SINE Alu 1 301 -10 1034 223 105 98 chr11 72696135 72696402 -78087151 + LTR15-int LTR ERV1 2232 3730 -2868 1265 239 112 48 chr11 72696452 72696956 -78086597 + LTR15-int LTR ERV1 2608 3078 -1858 2410 85 0 0 chr11 72696956 72697263 -78086290 + AluY SINE Alu 1 307 -4 1265 239 112 48 chr11 72697263 72697341 -78086212 + LTR15-int LTR ERV1 3078 3150 -1786 1765 154 14 10 chr11 72697341 72697633 -78085920 - AluJb SINE Alu -19 293 1 1265 239 112 48 chr11 72697633 72697692 -78085861 + LTR15-int LTR ERV1 3150 3270 -1666 6207 126 26 23 chr11 72697742 72698736 -78084817 - LTR13 LTR ERVK 0 1007 11 1927 133 0 7 chr11 72698736 72699030 -78084523 + AluSx SINE Alu 12 303 -9 1973 132 19 46 chr11 72699167 72699538 -78084015 + MER4E LTR ERV1 1 361 -405 1807 115 12 2 chr11 72700059 72700379 -78083174 + L1P LINE L1 4945 5265 -881 666 72 0 21 chr11 72700899 72700996 -78082557 - AluY SINE Alu -2 309 215 848 113 0 0 chr11 72700997 72701112 -78082441 - AluSq/x SINE Alu -198 115 1 7561 29 2 5 chr11 72702345 72703416 -78080137 + L1PA3 LINE L1 5105 6155 0 2945 135 9 2 chr11 72703829 72704296 -78079257 + LTR15-int LTR ERV1 8266 8735 0 3001 94 58 13 chr11 72704297 72704763 -78078790 + LTR15 LTR ERV1 1 487 -6 1488 114 0 0 chr11 72704767 72704968 -78078585 + AluSg/x SINE Alu 93 293 -17 1124 153 11 0 chr11 72704968 72705144 -78078409 + AluSg/x SINE Alu 134 311 -1 1964 135 0 0 chr11 72705167 72705448 -78078105 + AluSq SINE Alu 15 295 -18 19666 78 9 5 chr11 72705548 72707698 -78075855 - HERVK11 LTR ERVK -676 7277 5115 2427 72 0 0 chr11 72707698 72708002 -78075551 - AluY SINE Alu -7 304 1 19666 78 9 5 chr11 72708002 72708523 -78075030 - HERVK11 LTR ERVK -2838 5115 4597 1976 95 37 0 chr11 72708624 72708897 -78074656 + AluSg SINE Alu 9 291 -19 1119 144 0 11 chr11 72708972 72708996 -78074557 - AluSg/x SINE Alu -3 309 286 240 86 0 0 chr11 72708996 72709031 -78074522 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1119 144 0 11 chr11 72709031 72709186 -78074367 - AluSg/x SINE Alu -26 286 132 1761 126 7 18 chr11 72709197 72709474 -78074079 - AluSq SINE Alu -11 302 29 250 215 31 0 chr11 72709525 72709590 -78073963 + L1MA9 LINE L1 6221 6287 -25 226 275 42 33 chr11 72709695 72709815 -78073738 + L1P LINE L1 3343 3463 -2683 1451 182 8 0 chr11 72709842 72710095 -78073458 + AluJo SINE Alu 1 255 -57 1634 112 75 0 chr11 72710095 72710362 -78073191 - MER4B LTR ERV1 -321 289 3 1300 128 38 9 chr11 72710365 72710576 -78072977 - MER4B-int LTR ERV1 -1 6757 6541 1040 191 0 0 chr11 72710578 72710761 -78072792 - AluSg/x SINE Alu -5 307 125 233 0 62 0 chr11 72711139 72711171 -78072382 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 5669 98 9 98 chr11 72711171 72711201 -78072352 - MER4B-int LTR ERV1 -262 6496 6465 7411 53 26 0 chr11 72711201 72712075 -78071478 + MER11D LTR ERVK 1 897 0 5669 98 9 98 chr11 72712075 72712431 -78071122 - MER4B-int LTR ERV1 -293 6465 6079 2773 91 11 16 chr11 72712431 72712805 -78070748 + THE1C LTR MaLR 4 375 0 5669 98 9 98 chr11 72712805 72713145 -78070408 - MER4B-int LTR ERV1 -679 6079 5710 1812 139 14 0 chr11 72713145 72713425 -78070128 + AluJb SINE Alu 1 284 -28 5669 98 9 98 chr11 72713425 72713537 -78070016 - MER4B-int LTR ERV1 -1048 5710 5778 2165 110 0 0 chr11 72713537 72713828 -78069725 - AluSg SINE Alu -19 291 1 5669 98 9 98 chr11 72713828 72714113 -78069440 - MER4B-int LTR ERV1 -979 5779 5470 1483 113 0 0 chr11 72714162 72714365 -78069188 - AluY SINE Alu -108 203 1 1006 122 0 30 chr11 72714365 72714522 -78069031 - AluSg/x SINE Alu -5 307 154 2136 123 37 0 chr11 72714639 72715013 -78068540 + MER4E LTR ERV1 379 766 0 606 251 35 40 chr11 72715014 72715134 -78068419 + MER31-int LTR ERV1 3572 3691 -1245 206 0 69 0 chr11 72715134 72715163 -78068390 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 606 251 35 40 chr11 72715163 72715177 -78068376 + MER31-int LTR ERV1 3691 3704 -1232 2076 120 3 3 chr11 72715177 72715486 -78068067 + AluSx SINE Alu 1 309 -3 606 251 35 40 chr11 72715486 72715577 -78067976 + MER31-int LTR ERV1 3704 3797 -1139 636 134 41 0 chr11 72715583 72715680 -78067873 + AluJ/FLAM SINE Alu 2 102 -210 499 208 67 8 chr11 72716060 72716180 -78067373 - MER65A LTR ERV1 -318 127 1 266 267 70 12 chr11 72716180 72716266 -78067287 - MIR SINE MIR -131 131 41 306 288 8 25 chr11 72717084 72717202 -78066351 - MIR3 SINE MIR -22 186 71 569 237 14 7 chr11 72720777 72720916 -78062637 + MIR SINE MIR 57 196 -66 447 219 0 0 chr11 72722123 72722301 -78061252 + (TG)n Simple_repeat Simple_repeat 1 178 0 630 164 0 16 chr11 72722316 72722499 -78061054 + (TG)n Simple_repeat Simple_repeat 1 180 0 584 216 2 2 chr11 72722534 72723134 -78060419 + (TG)n Simple_repeat Simple_repeat 1 600 0 690 201 2 2 chr11 72723408 72723952 -78059601 + (TG)n Simple_repeat Simple_repeat 1 544 0 734 163 0 17 chr11 72723996 72724295 -78059258 + (TG)n Simple_repeat Simple_repeat 1 293 0 457 114 34 23 chr11 72725366 72725454 -78058099 + MER4A LTR ERV1 1 89 -575 2191 87 14 0 chr11 72725458 72725746 -78057807 - AluSp SINE Alu -15 298 7 354 149 70 14 chr11 72725772 72725886 -78057667 + MER4A LTR ERV1 263 441 -223 291 212 0 17 chr11 72725903 72725972 -78057581 + MER4B LTR ERV1 382 439 -171 309 277 84 0 chr11 72725972 72726055 -78057498 + L1MC4 LINE L1 6614 6703 -1339 2094 89 13 26 chr11 72726060 72726363 -78057190 - AluSq SINE Alu -14 299 1 893 123 7 14 chr11 72726363 72726503 -78057050 + MER4B LTR ERV1 427 565 -45 2091 121 0 7 chr11 72726503 72726801 -78056752 - AluSx SINE Alu -16 296 1 2389 55 0 0 chr11 72726829 72727120 -78056433 - AluY SINE Alu 0 311 21 323 132 0 0 chr11 72727120 72727173 -78056380 + MER4A LTR ERV1 612 664 0 187 328 15 0 chr11 72727626 72727693 -78055860 - MIR SINE MIR -102 160 93 224 351 9 26 chr11 72727948 72728062 -78055491 + L2 LINE L2 3078 3189 -83 359 264 132 42 chr11 72729115 72729282 -78054271 + MIR SINE MIR 72 253 -9 200 211 0 0 chr11 72729293 72729331 -78054222 - L2 LINE L2 -9 3263 3226 447 101 14 0 chr11 72729703 72729772 -78053781 + L1MB8 LINE L1 6103 6172 -6 2011 98 0 4 chr11 72729871 72730146 -78053407 + AluSq SINE Alu 1 274 -39 10276 212 8 12 chr11 72730146 72732477 -78051076 + L1MB1 LINE L1 2769 5090 -1056 293 147 0 87 chr11 72732525 72732709 -78050844 + (TA)n Simple_repeat Simple_repeat 1 168 0 1825 130 4 0 chr11 72732715 72732991 -78050562 + L1PB1 LINE L1 5779 6055 -96 950 150 7 0 chr11 72733091 72733238 -78050315 - AluSq/x SINE Alu -164 148 1 271 299 119 18 chr11 72733238 72733516 -78050037 - L1M4 LINE L1 -3384 2762 2457 972 208 64 134 chr11 72733518 72733683 -78049870 + MLT1A2 LTR MaLR 1 176 -198 2268 109 0 0 chr11 72733683 72733995 -78049558 + AluSx SINE Alu 1 312 0 972 208 64 134 chr11 72733995 72734248 -78049305 + MLT1A2 LTR MaLR 176 374 0 1436 198 50 8 chr11 72734274 72734598 -78048955 + L1MB1 LINE L1 5493 5784 -400 2235 101 0 0 chr11 72734598 72734894 -78048659 + AluSx SINE Alu 5 300 -12 1436 198 50 8 chr11 72734894 72735186 -78048367 + L1MB1 LINE L1 5784 6062 -122 2066 234 2 28 chr11 72735187 72735622 -78047931 + LTR23-int LTR ERV1 3664 4087 -2809 16567 256 51 65 chr11 72735646 72735871 -78047682 - HERVI LTR ERV1 -2293 5492 5266 185 281 49 49 chr11 72735871 72735953 -78047600 + L2 LINE L2 3191 3272 0 16567 256 51 65 chr11 72735953 72738994 -78044559 - HERVI LTR ERV1 -2519 5266 2246 2132 66 35 0 chr11 72738994 72739281 -78044272 + AluY SINE Alu 1 297 -14 16567 256 51 65 chr11 72739281 72741495 -78042058 - HERVI LTR ERV1 -5539 2246 4 2138 184 66 81 chr11 72741500 72742104 -78041449 - LTR10E LTR ERV1 -21 612 18 466 196 178 0 chr11 72742106 72742213 -78041340 - FLAM_C SINE Alu -16 127 2 631 252 13 0 chr11 72742305 72742460 -78041093 - MLT1F LTR MaLR -6 536 380 609 259 62 72 chr11 72742574 72742948 -78040605 + LTR52 LTR ERVL 16 385 -36 1232 219 94 2 chr11 72743722 72744048 -78039505 + MSTD LTR MaLR 39 365 0 1232 200 75 4 chr11 72744191 72744456 -78039097 + REP3 LTR ERV 1 284 -278 4563 65 13 6 chr11 72744456 72745479 -78038074 + MER11A LTR ERVK 1 1266 0 5192 92 4 4 chr11 72745479 72746177 -78037376 + HERVK11 LTR ERVK 1 698 -7255 837 115 0 8 chr11 72746277 72746407 -78037146 - AluSg SINE Alu -181 129 1 743 209 10 39 chr11 72746415 72746613 -78036940 + LTR23-int LTR ERV1 1417 1610 -3513 1378 212 0 20 chr11 72746613 72746906 -78036647 + AluJo SINE Alu 1 287 -25 261 125 0 0 chr11 72747034 72747074 -78036479 + LTR23-int LTR ERV1 1614 1653 -3470 489 133 0 0 chr11 72747074 72747149 -78036404 + AluS SINE Alu 225 299 -13 1248 176 17 82 chr11 72747230 72747588 -78035965 + LTR23-int LTR ERV1 1695 2075 -4256 2217 92 3 7 chr11 72747588 72747894 -78035659 + AluSx SINE Alu 1 305 -7 1248 176 17 82 chr11 72747894 72747959 -78035594 + LTR23-int LTR ERV1 2075 2143 -4188 2036 93 10 17 chr11 72747959 72748250 -78035303 + AluSc SINE Alu 1 289 -20 1248 176 17 82 chr11 72748250 72748348 -78035205 + LTR23-int LTR ERV1 2143 3607 -2724 839 118 0 0 chr11 72748349 72748468 -78035085 + FRAM SINE Alu 38 156 -20 2102 187 41 39 chr11 72748468 72748559 -78034994 + LTR23-int LTR ERV1 2179 2268 -2855 2091 120 0 0 chr11 72748559 72748859 -78034694 + AluSx SINE Alu 1 300 -12 2102 187 41 39 chr11 72748859 72749333 -78034220 + LTR23-int LTR ERV1 2268 2745 -2378 2157 94 7 7 chr11 72749336 72749635 -78033918 + AluSx SINE Alu 1 299 -13 651 296 12 21 chr11 72750725 72750965 -78032588 + L1M4 LINE L1 4530 4767 -1379 360 295 82 33 chr11 72750985 72751168 -78032385 - L1M4 LINE L1 -3185 2961 2770 1910 119 0 11 chr11 72751433 72751719 -78031834 - AluSx SINE Alu -1 311 29 497 183 20 86 chr11 72751887 72751986 -78031567 + L1MA6 LINE L1 6115 6199 -106 1589 197 3 0 chr11 72751986 72752280 -78031273 - AluJo SINE Alu -17 295 1 497 183 20 86 chr11 72752280 72752381 -78031172 + L1MA6 LINE L1 6199 6305 0 6134 78 20 16 chr11 72752451 72753661 -78029892 + SVA Other Other 204 1378 -8 387 234 29 88 chr11 72753668 72753805 -78029748 + L1MC4 LINE L1 7914 8042 0 198 103 0 0 chr11 72753817 72753846 -78029707 + (A)n Simple_repeat Simple_repeat 1 29 0 239 158 0 0 chr11 72753941 72753979 -78029574 - MER20 DNA MER1_type 0 219 182 775 185 179 0 chr11 72753987 72754171 -78029382 - MER20 DNA MER1_type -2 217 1 344 287 96 37 chr11 72754171 72754359 -78029194 - L1 LINE L1 -1146 5000 4802 351 191 76 3 chr11 72754388 72754511 -78029042 + MLT1J2 LTR MaLR 1 166 -284 198 0 0 0 chr11 72754542 72754564 -78028989 + (TC)n Simple_repeat Simple_repeat 1 22 0 549 226 109 78 chr11 72754647 72754930 -78028623 - MER31-int LTR ERV1 -242 5823 4419 1379 149 0 0 chr11 72754930 72755138 -78028415 - AluJb SINE Alu -104 208 1 825 164 121 0 chr11 72755152 72755292 -78028261 + FRAM SINE Alu 1 151 -25 248 133 33 33 chr11 72755313 72755373 -78028180 + L1MC4 LINE L1 6644 6703 -1339 1710 145 11 7 chr11 72755474 72755757 -78027796 + AluJb SINE Alu 1 284 -28 1071 72 0 0 chr11 72755787 72755925 -78027628 - AluSg/x SINE Alu -16 296 159 574 318 111 42 chr11 72756028 72756157 -78027396 + L1M4 LINE L1 2402 2521 -3625 480 35 0 0 chr11 72756157 72756215 -78027338 + (TG)n Simple_repeat Simple_repeat 1 58 0 574 318 111 42 chr11 72756215 72756491 -78027062 + L1M4 LINE L1 2521 2835 -3311 2176 121 0 0 chr11 72756514 72756820 -78026733 - AluSg SINE Alu -4 306 1 2171 95 0 7 chr11 72756878 72757174 -78026379 - AluY SINE Alu -9 302 9 1608 178 0 4 chr11 72757192 72757461 -78026092 - AluJb SINE Alu -44 268 1 939 250 9 31 chr11 72757466 72757725 -78025828 - L1M4 LINE L1 -985 5161 4898 1844 151 51 38 chr11 72757725 72758095 -78025458 - THE1C LTR MaLR 0 375 1 8710 109 95 61 chr11 72758095 72759623 -78023930 - THE1C-int LTR MaLR 0 1580 1 1875 167 44 25 chr11 72759623 72759789 -78023764 - THE1C LTR MaLR 0 375 214 198 0 0 0 chr11 72759789 72759811 -78023742 + (GA)n Simple_repeat Simple_repeat 2 23 0 1875 167 44 25 chr11 72759811 72759832 -78023721 - THE1C LTR MaLR -161 214 195 1986 118 47 0 chr11 72759832 72760128 -78023425 - AluSx SINE Alu 0 312 3 1875 167 44 25 chr11 72760128 72760305 -78023248 - THE1C LTR MaLR -180 195 3 939 250 9 31 chr11 72760305 72760363 -78023190 - L1M4 LINE L1 -1245 4901 4849 * 1956 122 29 6 chr11 72760362 72760673 -78022880 + L1MB3 LINE L1 5819 6136 -47 1862 101 0 15 chr11 72760674 72760941 -78022612 + AluSx SINE Alu 5 267 -45 1426 122 112 49 chr11 72760944 72761231 -78022322 - THE1C LTR MaLR -70 305 1 508 116 0 0 chr11 72761807 72761876 -78021677 + MER41-int LTR ERV1 1235 1303 -3568 266 238 63 0 chr11 72761856 72761919 -78021634 + MER41-int LTR ERV1 2654 2720 -3226 * 2311 72 0 3 chr11 72762053 72762345 -78021208 + AluY SINE Alu 1 291 -20 457 179 228 0 chr11 72762400 72762523 -78021030 - LTR23 LTR ERV1 -286 151 1 2134 59 40 0 chr11 72762741 72763014 -78020539 + AluSx SINE Alu 2 285 -27 1111 140 0 11 chr11 72763097 72763309 -78020244 - AluSg/x SINE Alu 0 312 134 2116 118 0 0 chr11 72763309 72763624 -78019929 - AluSq SINE Alu 0 313 1 906 161 6 46 chr11 72763803 72763958 -78019595 - LTR23-int LTR ERV1 -4811 1520 1371 4168 68 47 0 chr11 72763958 72764487 -78019066 - MER41A LTR ERV1 0 554 1 906 161 6 46 chr11 72764487 72764505 -78019048 - LTR23-int LTR ERV1 -4960 1371 1354 361 212 53 53 chr11 72764578 72764710 -78018843 - LTR23-int LTR ERV1 -4917 1414 1283 333 209 0 0 chr11 72764710 72764777 -78018776 - tRNA-Glu-GAG tRNA tRNA 0 75 9 348 213 13 13 chr11 72764785 72764860 -78018693 - LTR23-int LTR ERV1 -5136 1195 1121 2056 92 46 0 chr11 72765414 72765696 -78017857 - AluSq SINE Alu -18 295 1 1228 245 23 39 chr11 72765925 72766392 -78017161 - LTR23-int LTR ERV1 -4508 615 15 2019 109 7 0 chr11 72766435 72766746 -78016807 + AluSg SINE Alu 7 319 0 827 131 92 51 chr11 72766746 72766905 -78016648 - LTR23 LTR ERV1 -19 448 258 1768 160 7 0 chr11 72766905 72767198 -78016355 - AluJb SINE Alu -17 295 1 827 131 92 51 chr11 72767198 72767238 -78016315 - LTR23 LTR ERV1 -209 258 221 607 96 0 53 chr11 72767240 72767334 -78016219 + FLAM_A SINE Alu 32 120 -22 1235 119 83 5 chr11 72767334 72767552 -78016001 - LTR23 LTR ERV1 -202 235 1 2352 77 0 6 chr11 72767632 72767945 -78015608 - AluY SINE Alu 0 311 1 585 204 97 0 chr11 72768393 72768506 -78015047 - FLAM_C SINE Alu -16 127 4 234 304 25 13 chr11 72768623 72768702 -78014851 + MLT1K LTR MaLR 4 83 -505 312 223 305 51 chr11 72768755 72768941 -78014612 + MLT1K LTR MaLR 184 424 -164 2031 101 42 0 chr11 72768941 72769228 -78014325 + AluSx SINE Alu 1 299 -13 252 219 191 19 chr11 72769295 72769400 -78014153 + MLT1K LTR MaLR 449 571 -17 232 248 122 30 chr11 72769915 72770094 -78013459 + MLT1J LTR MaLR 267 450 0 2170 109 0 6 chr11 72770273 72770585 -78012968 + AluSx SINE Alu 1 310 -2 2151 145 71 0 chr11 72770595 72770988 -78012565 + L1MB7 LINE L1 5754 6174 -10 1775 154 0 13 chr11 72770990 72771289 -78012264 + AluJo SINE Alu 1 295 -17 298 255 51 10 chr11 72771624 72771722 -78011831 + MIR SINE MIR 111 212 -50 515 217 83 15 chr11 72772180 72772470 -78011083 - MER34B LTR ERV1 0 565 230 341 122 0 0 chr11 72772749 72772798 -78010755 + MER41D LTR ERV1 14 62 -495 2047 107 10 0 chr11 72772802 72773092 -78010461 - AluSx SINE Alu -13 299 7 628 143 10 0 chr11 72773098 72773196 -78010357 - FLAM_C SINE Alu -10 133 35 334 136 0 0 chr11 72773218 72773262 -78010291 + Alu SINE Alu 1 44 -259 * 1940 162 37 9 chr11 72773261 72773402 -78010151 + MER41D LTR ERV1 222 358 -199 333 0 0 0 chr11 72773402 72773439 -78010114 + (TA)n Simple_repeat Simple_repeat 2 38 0 1940 162 37 9 chr11 72773439 72773624 -78009929 + MER41D LTR ERV1 358 557 0 2856 87 3 3 chr11 72773650 72774018 -78009535 + THE1C LTR MaLR 1 368 -7 1242 147 128 12 chr11 72774367 72774618 -78008935 + MER83B-int LTR ERV1 939 1218 -568 785 189 14 7 chr11 72774601 72774749 -78008804 + MER83B-int LTR ERV1 1500 1648 -6472 * 1781 142 77 38 chr11 72775269 72775841 -78007712 + MER83B-int LTR ERV1 1729 2506 -4252 843 125 21 11 chr11 72775948 72776109 -78007444 + MER83B-int LTR ERV1 3734 4533 -347 1922 144 3 16 chr11 72776109 72776422 -78007131 + AluSg SINE Alu 1 309 -1 22 0 0 0 chr11 72776816 72776838 -78006715 + GC_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr11 72776877 72776903 -78006650 + GC_rich Low_complexity Low_complexity 1 26 0 969 256 105 48 chr11 72777892 72778329 -78005224 + L2 LINE L2 2851 3312 -1 207 208 42 21 chr11 72779568 72779616 -78003937 + MIR3 SINE MIR 144 192 -16 258 344 24 16 chr11 72779931 72780056 -78003497 + MIR3 SINE MIR 35 160 -48 341 282 19 0 chr11 72780101 72780204 -78003349 - MIR SINE MIR -48 214 110 981 209 0 0 chr11 72781655 72782036 -78001517 + (TGGA)n Simple_repeat Simple_repeat 1 381 0 192 333 0 0 chr11 72785154 72785220 -77998333 - MIR SINE MIR -118 144 79 685 212 103 0 chr11 72786232 72786416 -77997137 + MIR SINE MIR 10 212 -50 258 32 0 0 chr11 72786634 72786665 -77996888 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 2123 60 36 36 chr11 72786678 72786979 -77996574 + AluSg SINE Alu 1 301 -9 381 358 95 49 chr11 72786980 72787326 -77996227 - L2 LINE L2 -18 3254 2893 4153 84 30 0 chr11 72787797 72788335 -77995218 - MER41A LTR ERV1 0 554 1 496 171 0 0 chr11 72788391 72788467 -77995086 - AluJ/FLAM SINE Alu -227 85 10 1456 192 39 86 chr11 72788482 72788714 -77994839 - MLT1B LTR MaLR -22 368 127 606 240 8 0 chr11 72788714 72788843 -77994710 + FLAM_A SINE Alu 1 130 -3 2028 125 30 0 chr11 72788844 72789147 -77994406 + AluJb SINE Alu 1 312 0 1456 192 39 86 chr11 72789147 72789298 -77994255 - MLT1B LTR MaLR -262 128 1 925 176 0 0 chr11 72789362 72789521 -77994032 - AluJb SINE Alu -7 305 147 2154 100 0 3 chr11 72789866 72790156 -77993397 + AluY SINE Alu 7 295 -16 3581 169 80 105 chr11 72790166 72790495 -77993058 + L1MC3 LINE L1 5433 5769 -2016 2062 122 0 0 chr11 72790495 72790790 -77992763 + AluSx SINE Alu 1 295 -17 3581 169 80 105 chr11 72790790 72791082 -77992471 + L1MC3 LINE L1 5769 6067 -1718 2082 127 0 7 chr11 72791082 72791390 -77992163 - AluSx SINE Alu -6 306 1 788 182 59 6 chr11 72791393 72791563 -77991990 - FRAM SINE Alu 0 176 1 3581 169 80 105 chr11 72791563 72792159 -77991394 + L1MC3 LINE L1 6069 6679 -1106 1906 132 0 43 chr11 72792159 72792485 -77991068 - AluSx SINE Alu 0 312 1 3581 169 80 105 chr11 72792485 72792496 -77991057 + L1MC3 LINE L1 6679 6689 -1096 1622 176 0 36 chr11 72792496 72792803 -77990750 - AluJo SINE Alu -16 296 1 3581 169 80 105 chr11 72792803 72793001 -77990552 + L1MC3 LINE L1 6689 6922 -863 351 78 0 0 chr11 72793001 72793052 -77990501 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 315 58 19 39 chr11 72793060 72793112 -77990441 + MLT2C1 LTR ERVL 347 397 0 401 176 0 0 chr11 72793112 72793180 -77990373 + L1MC3 LINE L1 7683 7750 -35 1764 125 0 66 chr11 72793187 72793517 -77990036 - AluSx SINE Alu 0 310 1 360 237 104 22 chr11 72793518 72793653 -77989900 + Charlie8 DNA MER1_type 145 290 -2127 238 220 20 0 chr11 72793648 72793698 -77989855 - AluJb SINE Alu -70 232 182 * 219 385 31 0 chr11 72794517 72794647 -77988906 - L2 LINE L2 -526 2788 2655 1537 142 97 15 chr11 72794720 72794987 -77988566 - AluJo SINE Alu -23 289 1 1336 193 22 121 chr11 72794991 72795396 -77988157 + MLT1A1 LTR MaLR 1 365 0 472 321 97 19 chr11 72795507 72795828 -77987725 - LTR16B LTR ERVL -93 357 12 185 258 82 62 chr11 72795990 72796087 -77987466 - L2 LINE L2 -20 3252 3154 372 349 84 5 chr11 72796780 72796995 -77986558 + MIR SINE MIR 3 234 -28 2153 104 13 3 chr11 72797654 72797963 -77985590 + AluSx SINE Alu 1 312 0 411 225 78 54 chr11 72798019 72798148 -77985405 + MIR SINE MIR 49 180 -82 478 175 0 0 chr11 72798588 72798668 -77984885 - L2 LINE L2 0 3313 3234 387 332 134 0 chr11 72798733 72798980 -77984573 + L2 LINE L2 2993 3272 0 244 218 23 46 chr11 72799729 72799816 -77983737 + (CGGG)n Simple_repeat Simple_repeat 2 86 0 195 42 0 0 chr11 72799930 72799954 -77983599 + (CTGGGG)n Simple_repeat Simple_repeat 6 29 0 339 299 26 0 chr11 72800168 72800285 -77983268 - MIR SINE MIR -56 152 33 351 225 0 45 chr11 72802368 72802479 -77981074 + CT-rich Low_complexity Low_complexity 1 106 0 180 128 51 0 chr11 72803003 72803042 -77980511 - L2 LINE L2 -205 3067 3027 2160 116 3 3 chr11 72803436 72803747 -77979806 + AluSx SINE Alu 1 311 -1 450 267 117 0 chr11 72804040 72804228 -77979325 + MIR SINE MIR 23 237 -25 345 280 0 0 chr11 72804535 72804770 -77978783 + (TGGA)n Simple_repeat Simple_repeat 1 235 0 297 248 7 20 chr11 72804809 72804962 -77978591 + (TGGA)n Simple_repeat Simple_repeat 4 154 0 191 227 0 23 chr11 72804989 72805077 -77978476 + (TGGA)n Simple_repeat Simple_repeat 3 88 0 267 31 0 0 chr11 72805092 72805124 -77978429 + (TG)n Simple_repeat Simple_repeat 2 33 0 1543 182 7 25 chr11 72805124 72805410 -77978143 - AluJo SINE Alu -27 285 5 1140 195 64 0 chr11 72805661 72805897 -77977656 + L1MB7 LINE L1 5422 5672 -512 302 169 0 3 chr11 72805920 72806145 -77977408 + AluJo SINE Alu 13 300 -2 2613 128 55 59 chr11 72806158 72806264 -77977289 + L1MB7 LINE L1 5667 5772 -412 2170 108 10 0 chr11 72806264 72806569 -77976984 + AluSx SINE Alu 3 310 -2 2613 128 55 59 chr11 72806569 72806972 -77976581 + L1MB7 LINE L1 5772 6174 -10 1815 154 0 13 chr11 72806974 72807273 -77976280 + AluJo SINE Alu 1 295 -17 294 255 51 10 chr11 72807608 72807706 -77975847 + MIR SINE MIR 111 212 -50 674 240 177 10 chr11 72808164 72808452 -77975101 - MER34B LTR ERV1 0 565 230 328 122 0 0 chr11 72808734 72808783 -77974770 + MER41D LTR ERV1 14 62 -495 2067 107 10 0 chr11 72808787 72809077 -77974476 - AluSx SINE Alu -13 299 7 611 141 10 10 chr11 72809083 72809182 -77974371 - FLAM_C SINE Alu -10 133 35 322 136 0 0 chr11 72809204 72809248 -77974305 + Alu SINE Alu 1 44 -258 * 627 146 0 24 chr11 72809247 72809370 -77974183 + MER41D LTR ERV1 222 341 -216 2000 136 0 16 chr11 72809478 72809788 -77973765 + AluJo SINE Alu 1 305 -7 288 346 6 13 chr11 72809788 72809947 -77973606 + L1M4 LINE L1 2190 2347 -3799 2128 120 7 0 chr11 72809958 72810267 -77973286 - AluSx SINE Alu -1 311 1 198 0 0 0 chr11 72810292 72810314 -77973239 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 758 186 29 0 chr11 72810337 72810477 -77973076 + FAM SINE Alu 1 41 -8 238 328 105 34 chr11 72810489 72810632 -77972921 + L1M4 LINE L1 2388 2519 -3627 462 36 0 0 chr11 72810632 72810688 -77972865 + (TG)n Simple_repeat Simple_repeat 1 56 0 238 328 105 34 chr11 72810688 72810962 -77972591 + L1M4 LINE L1 2519 2835 -3311 2181 125 0 0 chr11 72810985 72811290 -77972263 - AluSg SINE Alu -5 305 1 2230 92 3 0 chr11 72811347 72811640 -77971913 - AluY SINE Alu -9 302 9 1634 178 0 4 chr11 72811658 72811927 -77971626 - AluJb SINE Alu -44 268 1 891 250 9 31 chr11 72811932 72812191 -77971362 - L1M4 LINE L1 -985 5161 4898 1904 159 49 35 chr11 72812191 72812561 -77970992 - THE1C LTR MaLR 0 375 1 8836 110 95 61 chr11 72812561 72814089 -77969464 - THE1C-int LTR MaLR 0 1580 1 1960 164 44 25 chr11 72814089 72814255 -77969298 - THE1C LTR MaLR 0 375 214 198 0 0 0 chr11 72814255 72814277 -77969276 + (GA)n Simple_repeat Simple_repeat 2 23 0 1960 164 44 25 chr11 72814277 72814298 -77969255 - THE1C LTR MaLR -161 214 195 2008 118 47 0 chr11 72814298 72814594 -77968959 - AluSx SINE Alu 0 312 3 1960 164 44 25 chr11 72814594 72814771 -77968782 - THE1C LTR MaLR -180 195 3 891 250 9 31 chr11 72814771 72814829 -77968724 - L1M4 LINE L1 -1245 4901 4849 * 1830 122 29 6 chr11 72814828 72815139 -77968414 + L1MB3 LINE L1 5819 6136 -47 2212 84 0 33 chr11 72815140 72815439 -77968114 + AluSx SINE Alu 5 293 -19 803 129 8 0 chr11 72815441 72815565 -77967988 - FRAM SINE Alu -20 156 32 279 152 0 0 chr11 72815571 72815617 -77967936 + FLAM SINE Alu 84 129 -4 806 172 7 41 chr11 72815635 72815780 -77967773 - AluJo SINE Alu -171 141 2 352 99 7 121 chr11 72815780 72815846 -77967707 + LTR23-int LTR ERV1 2902 2945 -2178 2375 70 0 6 chr11 72815846 72816159 -77967394 - AluY SINE Alu 0 311 1 352 99 7 121 chr11 72816159 72816233 -77967320 + LTR23-int LTR ERV1 2945 3026 -2097 1928 139 3 3 chr11 72816234 72816528 -77967025 - AluSx SINE Alu -16 296 3 2309 119 77 46 chr11 72816558 72816719 -77966834 + LTR23-int LTR ERV1 4127 4282 -2049 2158 107 3 0 chr11 72816719 72817010 -77966543 - AluSg SINE Alu -18 292 1 2309 119 77 46 chr11 72817010 72817345 -77966208 + LTR23-int LTR ERV1 4282 4638 -1693 1512 178 22 0 chr11 72817361 72817631 -77965922 - AluJo SINE Alu -6 306 31 817 187 136 108 chr11 72817765 72818087 -77965466 + MER51C LTR ERV1 328 640 0 6350 144 17 19 chr11 72818120 72818710 -77964843 + LTR23-int LTR ERV1 4434 5023 -100 5939 119 28 46 chr11 72818710 72819682 -77963871 + LTR13 LTR ERVK 1 954 0 6350 144 17 19 chr11 72819682 72820265 -77963288 + LTR23-int LTR ERV1 5023 5605 482 2076 119 0 16 chr11 72820265 72820568 -77962985 - AluSx SINE Alu -14 298 1 6350 144 17 19 chr11 72820568 72820596 -77962957 + LTR23-int LTR ERV1 5605 4808 -315 1891 154 0 3 chr11 72820596 72820895 -77962658 - AluJb SINE Alu -14 298 1 6350 144 17 19 chr11 72820895 72820947 -77962606 + LTR23-int LTR ERV1 4807 4858 -265 1379 176 30 17 chr11 72821193 72821488 -77962065 + LTR23 LTR ERV1 1 299 -138 265 146 0 0 chr11 72821496 72821537 -77962016 + AluJ SINE Alu 85 125 -177 1496 89 5 14 chr11 72821569 72821782 -77961771 - AluSq SINE Alu -100 213 3 1011 190 0 5 chr11 72821782 72821966 -77961587 + AluJ SINE Alu 118 300 -12 1855 126 43 17 chr11 72821968 72822269 -77961284 + AluSx SINE Alu 1 309 -3 327 289 32 32 chr11 72822600 72822756 -77960797 + LTR16C LTR ERVL 336 491 0 452 227 55 0 chr11 72822871 72822981 -77960572 + L2 LINE L2 3192 3307 -6 259 248 94 26 chr11 72823675 72823792 -77959761 - MIR SINE MIR -113 149 25 807 251 49 45 chr11 72824921 72824972 -77958581 - MER58A DNA MER1_type -2196 224 175 2532 52 0 0 chr11 72824972 72825278 -77958275 + AluY SINE Alu 1 306 -5 807 251 49 45 chr11 72825278 72825449 -77958104 - MER58A DNA MER1_type -2245 175 1 373 282 54 106 chr11 72826212 72826430 -77957123 + L1MEc LINE L1 976 1204 -1303 2089 109 7 0 chr11 72826430 72826723 -77956830 + AluSq SINE Alu 1 295 -18 373 282 54 106 chr11 72826723 72827017 -77956536 + L1MEc LINE L1 1204 1450 -1057 198 0 0 0 chr11 72827046 72827068 -77956485 + (A)n Simple_repeat Simple_repeat 1 22 0 910 122 0 29 chr11 72827071 72827210 -77956343 + AluJb SINE Alu 86 220 -92 4050 153 67 41 chr11 72827228 72828187 -77955366 + MER11C LTR ERVK 1 1071 0 2491 96 6 0 chr11 72828224 72828580 -77954973 - L1PA14 LINE L1 0 6161 5804 367 368 45 20 chr11 72828630 72828831 -77954722 + L1M4 LINE L1 5127 5332 -814 2419 110 17 6 chr11 72828833 72829187 -77954366 + L1PA11 LINE L1 5807 6164 -10 1871 86 22 14 chr11 72829188 72829466 -77954087 + AluSx SINE Alu 1 280 -32 863 19 19 0 chr11 72829466 72829574 -77953979 + (TAAAA)n Simple_repeat Simple_repeat 5 114 0 264 156 0 0 chr11 72831029 72831074 -77952479 - MIR SINE MIR -132 130 86 252 143 0 0 chr11 72831817 72831859 -77951694 + (TG)n Simple_repeat Simple_repeat 2 43 0 576 121 111 0 chr11 72833341 72833440 -77950113 - MER34 LTR ERV1 0 542 433 1515 105 0 0 chr11 72833440 72833640 -77949913 + AluSq SINE Alu 1 200 -113 995 129 135 16 chr11 72833640 72833833 -77949720 + MSTA LTR MaLR 213 428 0 1955 138 0 0 chr11 72833837 72834149 -77949404 - AluSx SINE Alu 0 312 1 493 239 77 33 chr11 72834155 72834378 -77949175 + MER93b LTR ERV1 167 373 0 1672 160 111 57 chr11 72834566 72834680 -77948873 - MSTA LTR MaLR 0 428 322 2006 125 10 10 chr11 72834680 72834992 -77948561 - AluSx SINE Alu 0 312 1 1745 102 0 12 chr11 72834992 72835236 -77948317 + AluSx SINE Alu 27 267 -45 1672 160 111 57 chr11 72835236 72835526 -77948027 - MSTA LTR MaLR -105 323 1 484 137 0 0 chr11 72836102 72836175 -77947378 + MER41-int LTR ERV1 1235 1307 -3564 256 238 63 0 chr11 72836151 72836214 -77947339 + MER41-int LTR ERV1 2654 2720 -3226 * 2322 72 0 3 chr11 72836348 72836640 -77946913 + AluY SINE Alu 1 291 -20 448 194 218 0 chr11 72836695 72836819 -77946734 - LTR23 LTR ERV1 -286 151 1 2227 78 3 13 chr11 72837037 72837346 -77946207 + AluSq SINE Alu 2 307 -6 2029 89 10 43 chr11 72837546 72837849 -77945704 + AluSq SINE Alu 1 293 -20 23 0 0 0 chr11 72838325 72838348 -77945205 + AT_rich Low_complexity Low_complexity 1 23 0 286 317 25 80 chr11 72838499 72838551 -77945002 - LTR49-int LTR ERV1 -2169 2478 2425 2205 78 10 3 chr11 72838551 72838845 -77944708 + AluSq SINE Alu 1 296 -17 286 317 25 80 chr11 72838845 72838991 -77944562 - LTR49-int LTR ERV1 -2222 2425 2291 3369 141 47 62 chr11 72839112 72839665 -77943888 - LTR1 LTR ERV1 0 785 289 3023 88 41 56 chr11 72839665 72840130 -77943423 + LTR22A LTR ERVK 1 458 0 3369 141 47 62 chr11 72840130 72840415 -77943138 - LTR1 LTR ERV1 -496 289 1 1288 156 16 67 chr11 72840417 72840852 -77942701 - LTR49-int LTR ERV1 -1910 4421 4031 922 119 0 0 chr11 72840852 72840978 -77942575 + AluSq/x SINE Alu 1 126 -186 1059 147 0 3 chr11 72841110 72841415 -77942138 + (TGGA)n Simple_repeat Simple_repeat 2 305 0 805 214 123 5 chr11 72841528 72841715 -77941838 + MER3 DNA MER1_type 1 209 0 259 219 27 27 chr11 72841660 72841733 -77941820 - MER3 DNA MER1_type -105 104 32 * 188 170 64 0 chr11 72843859 72843906 -77939647 - MIR SINE MIR -70 138 89 1867 115 24 20 chr11 72844017 72844313 -77939240 - AluSx SINE Alu -15 297 1 956 126 0 0 chr11 72844313 72844448 -77939105 - AluSq/x SINE Alu -177 135 1 299 242 188 24 chr11 72846746 72846952 -77936601 + MIR SINE MIR 20 262 0 255 139 0 0 chr11 72846967 72847010 -77936543 - MIR SINE MIR -62 146 104 216 167 0 0 chr11 72847985 72848021 -77935532 + (CAGCC)n Simple_repeat Simple_repeat 1 36 0 193 355 0 0 chr11 72848258 72848320 -77935233 - MIR SINE MIR -113 95 34 479 363 103 10 chr11 72849601 72849893 -77933660 - L2 LINE L2 -7 3306 2988 1985 116 14 0 chr11 72850728 72851020 -77932533 + AluSx SINE Alu 1 296 -16 288 357 119 15 chr11 72851180 72851449 -77932104 - L2 LINE L2 -10 3262 2966 1023 209 9 24 chr11 72851533 72851743 -77931810 - MER6B DNA MER2_type -3 207 1 2313 84 0 0 chr11 72851914 72852211 -77931342 + AluSx SINE Alu 1 297 -15 301 294 36 0 chr11 72852616 72852748 -77930805 - MIR SINE MIR -35 173 31 * 643 251 218 33 chr11 72852746 72853076 -77930477 - L2 LINE L2 -2 3311 2921 1250 146 83 143 chr11 72853137 72853522 -77930031 + LTR1 LTR ERV1 12 373 -412 1940 98 0 0 chr11 72853522 72853776 -77929777 + AluSx SINE Alu 47 300 -12 1321 132 70 18 chr11 72853776 72854004 -77929549 + AluSq SINE Alu 74 313 0 2173 88 65 24 chr11 72854004 72854345 -77929208 + LTR1 LTR ERV1 431 785 0 1125 268 218 18 chr11 72854347 72855004 -77928549 - L2 LINE L2 -396 2918 2131 373 256 157 0 chr11 72855066 72855187 -77928366 + MIR SINE MIR 120 259 -3 201 307 27 0 chr11 72855813 72855888 -77927665 + MIR3 SINE MIR 107 183 -25 1013 118 37 6 chr11 72856997 72857158 -77926395 + FRAM SINE Alu 1 166 0 2449 57 0 0 chr11 72857207 72857506 -77926047 - AluY SINE Alu -12 299 1 1695 160 3 36 chr11 72857578 72857885 -77925668 + AluJb SINE Alu 1 297 -15 1743 131 3 76 chr11 72857889 72857997 -77925556 + L1MB2 LINE L1 5865 5979 -192 2347 77 0 0 chr11 72857997 72858294 -77925259 + AluSx SINE Alu 1 297 -15 1743 131 3 76 chr11 72858294 72858514 -77925039 + L1MB2 LINE L1 5979 6169 -2 2336 87 0 0 chr11 72858524 72858824 -77924729 + AluSq SINE Alu 2 301 -12 2252 69 7 3 chr11 72858840 72859130 -77924423 + AluSc SINE Alu 6 296 -13 822 268 86 89 chr11 72859140 72859474 -77924079 + L1M4 LINE L1 3777 4111 -2035 1606 138 18 28 chr11 72859474 72859756 -77923797 + AluJo SINE Alu 21 299 -13 822 268 86 89 chr11 72859756 72859895 -77923658 + L1M4 LINE L1 4111 4249 -1897 1661 172 20 7 chr11 72859895 72860191 -77923362 + AluJo SINE Alu 1 300 -12 822 268 86 89 chr11 72860191 72860240 -77923313 + L1M4 LINE L1 4249 4297 -1849 2243 91 0 7 chr11 72860240 72860549 -77923004 + AluSq SINE Alu 1 307 -6 822 268 86 89 chr11 72860549 72860606 -77922947 + L1M4 LINE L1 4297 4353 -1793 2025 123 14 0 chr11 72860606 72860898 -77922655 + AluSx SINE Alu 1 296 -16 822 268 86 89 chr11 72860898 72860988 -77922565 + L1M4 LINE L1 4353 4442 -1704 2268 95 3 0 chr11 72860988 72861292 -77922261 - AluSx SINE Alu -7 305 1 822 268 86 89 chr11 72861292 72861446 -77922107 + L1M4 LINE L1 4442 4603 -1543 5563 26 2 0 chr11 72861446 72862070 -77921483 + SVA Other Other 762 1386 0 822 268 86 89 chr11 72862070 72862176 -77921377 + L1M4 LINE L1 4603 4708 -1438 4304 141 81 42 chr11 72862260 72863599 -77919954 - pTR5 LTR ERV1 -128 2220 119 916 113 15 0 chr11 72863711 72863844 -77919709 + AluSq/x SINE Alu 1 135 -177 2382 49 0 0 chr11 72863844 72864132 -77919421 + AluY SINE Alu 1 288 -23 269 88 44 15 chr11 72864132 72864200 -77919353 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 206 234 0 0 chr11 72864388 72864418 -77919135 + A-rich Low_complexity Low_complexity 1 33 -14 380 70 0 0 chr11 72864418 72864475 -77919078 + L1MB2 LINE L1 6115 6171 0 206 234 0 0 chr11 72864475 72864491 -77919062 + A-rich Low_complexity Low_complexity 32 47 0 1677 156 11 7 chr11 72864498 72864781 -77918772 + AluJb SINE Alu 1 284 -28 2151 104 3 0 chr11 72864809 72865106 -77918447 - AluSx SINE Alu -14 298 1 288 197 50 117 chr11 72865144 72865294 -77918259 + MLT1E LTR MaLR 400 593 0 460 230 29 43 chr11 72865356 72865495 -77918058 + L1ME3 LINE L1 6025 6161 -1 1860 134 0 11 chr11 72865586 72865894 -77917659 - AluSx SINE Alu 0 305 1 2230 105 0 6 chr11 72865972 72866285 -77917268 + AluSx SINE Alu 1 311 -1 2272 109 0 0 chr11 72866590 72866902 -77916651 - AluSx SINE Alu 0 312 1 350 185 0 0 chr11 72866934 72866999 -77916554 - MIR SINE MIR -12 250 186 2173 198 137 14 chr11 72867356 72867795 -77915758 - MLT1F1 LTR MaLR 0 567 57 1713 144 0 51 chr11 72867795 72868107 -77915446 - AluJb SINE Alu -13 299 4 2173 198 137 14 chr11 72868107 72868172 -77915381 - MLT1F1 LTR MaLR -510 57 1 330 26 0 0 chr11 72868295 72868334 -77915219 + (TC)n Simple_repeat Simple_repeat 1 39 0 * 387 0 0 0 chr11 72868333 72868376 -77915177 + (CA)n Simple_repeat Simple_repeat 1 43 0 332 289 70 23 chr11 72868509 72868637 -77914916 - MLT1K LTR MaLR -331 257 124 2074 99 3 26 chr11 72869480 72869782 -77913771 - AluSx SINE Alu -17 295 1 195 156 37 0 chr11 72869857 72869900 -77913653 + MIR SINE MIR 103 147 -61 1632 182 0 24 chr11 72870007 72870303 -77913250 + AluJb SINE Alu 16 304 -8 238 193 58 24 chr11 72870304 72870389 -77913164 - MIR SINE MIR -87 121 28 810 224 13 56 chr11 72871104 72871249 -77912304 + MIR SINE MIR 5 138 -124 2064 124 10 0 chr11 72871249 72871555 -77911998 + AluSx SINE Alu 1 309 -3 810 224 13 56 chr11 72871555 72871641 -77911912 + MIR SINE MIR 138 226 -36 2087 117 7 0 chr11 72871982 72872273 -77911280 + AluSx SINE Alu 8 300 -12 926 185 7 0 chr11 72872275 72872426 -77911127 - FRAM SINE Alu -14 152 1 314 277 77 15 chr11 72873085 72873217 -77910336 + MIR3 SINE MIR 60 200 -8 3075 117 47 125 chr11 72873686 72873782 -77909771 - MER51A LTR ERV1 -9 625 523 2134 99 0 59 chr11 72873782 72874105 -77909448 - AluSx SINE Alu -8 304 1 3075 117 47 125 chr11 72874105 72874686 -77908867 - MER51A LTR ERV1 -111 523 1 1462 53 5 5 chr11 72875215 72875402 -77908151 + AluY SINE Alu 117 303 -8 3122 159 2 0 chr11 72875593 72876083 -77907470 - MER41D LTR ERV1 0 557 67 2274 87 0 13 chr11 72876084 72876423 -77907130 - AluY SINE Alu 0 311 1 308 206 55 0 chr11 72876433 72876506 -77907047 - MER4D LTR ERV1 -785 87 11 1601 203 55 33 chr11 72876524 72876571 -77906982 - MER4D-int LTR ERV1 -3 6755 6711 2190 119 0 0 chr11 72876571 72876881 -77906672 - AluSx SINE Alu -2 310 1 1601 203 55 33 chr11 72876881 72877197 -77906356 - MER4D-int LTR ERV1 -47 6711 6384 1096 133 0 0 chr11 72877235 72877401 -77906152 + AluSp SINE Alu 146 311 -2 409 75 0 0 chr11 72877402 72877455 -77906098 - MER66-int LTR ERV1 -1913 4763 4711 459 156 56 0 chr11 72877504 72877594 -77905959 + AluSp/q SINE Alu 219 313 0 329 143 0 0 chr11 72877595 72877644 -77905909 - MER4-int LTR ERV1 -1915 4761 4713 508 168 178 0 chr11 72877646 72877753 -77905800 - MER4-int LTR ERV1 -4045 4075 3950 862 118 0 22 chr11 72877815 72877951 -77905602 - FLAM_C SINE Alu -10 133 1 706 177 28 99 chr11 72878099 72878280 -77905273 - MER4-int LTR ERV1 -4167 3953 3786 456 162 66 29 chr11 72878413 72878549 -77905004 - MER4-int LTR ERV1 -1862 4736 4596 2309 105 0 3 chr11 72878561 72878875 -77904678 + AluSp SINE Alu 1 313 0 2445 161 16 118 chr11 72878886 72879242 -77904311 + MER110-int LTR ERV1 4167 4401 -3719 1698 159 3 20 chr11 72879242 72879543 -77904010 - AluSq SINE Alu -17 296 1 2445 161 16 118 chr11 72879543 72879976 -77903577 + MER110-int LTR ERV1 4401 4876 -3244 3388 142 48 63 chr11 72879978 72880263 -77903290 + LTR1 LTR ERV1 1 289 -496 3023 88 41 56 chr11 72880263 72880728 -77902825 - LTR22A LTR ERVK 0 458 1 3388 142 48 63 chr11 72880728 72881281 -77902272 + LTR1 LTR ERV1 289 785 0 286 317 25 80 chr11 72881402 72881548 -77902005 + MER110-int LTR ERV1 2291 2425 -2222 2205 78 10 3 chr11 72881548 72881842 -77901711 - AluSq SINE Alu -17 296 1 286 317 25 80 chr11 72881842 72881894 -77901659 + MER110-int LTR ERV1 2425 2478 -2169 23 0 0 0 chr11 72882045 72882068 -77901485 + AT_rich Low_complexity Low_complexity 1 23 0 2029 89 10 43 chr11 72882544 72882847 -77900706 - AluSq SINE Alu -20 293 1 1657 182 0 3 chr11 72883047 72883354 -77900199 - AluSp SINE Alu -7 306 1 1622 176 0 36 chr11 72883365 72883672 -77899881 - AluJo SINE Alu -16 296 1 1036 101 81 35 chr11 72883672 72883870 -77899683 + L1MC3 LINE L1 6716 6922 -863 351 78 0 0 chr11 72883870 72883921 -77899632 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 315 58 19 39 chr11 72883929 72883981 -77899572 + MLT2C1 LTR ERVL 347 397 0 401 176 0 0 chr11 72883981 72884049 -77899504 + L1MC3 LINE L1 7683 7750 -35 1474 142 7 73 chr11 72884056 72884386 -77899167 - AluSx SINE Alu 0 310 1 360 237 104 22 chr11 72884387 72884522 -77899031 + Charlie8 DNA MER1_type 145 290 -2127 234 220 20 0 chr11 72884517 72884567 -77898986 - AluJb SINE Alu -70 232 182 * 219 385 31 0 chr11 72885386 72885516 -77898037 - L2 LINE L2 -526 2788 2655 1429 142 101 19 chr11 72885589 72885856 -77897697 - AluJo SINE Alu -23 289 1 1273 184 22 122 chr11 72885864 72886266 -77897287 + MLT1A1 LTR MaLR 4 365 0 472 321 97 19 chr11 72886377 72886698 -77896855 - LTR16B LTR ERVL -93 357 12 185 258 82 62 chr11 72886860 72886957 -77896596 - L2 LINE L2 -20 3252 3154 372 349 84 5 chr11 72887643 72887858 -77895695 + MIR SINE MIR 3 234 -28 2153 104 13 3 chr11 72888517 72888826 -77894727 + AluSx SINE Alu 1 312 0 411 225 78 54 chr11 72888883 72889012 -77894541 + MIR SINE MIR 49 180 -82 196 275 122 23 chr11 72889329 72889460 -77894093 + L2 LINE L2 2817 2960 -312 * 451 173 0 12 chr11 72889455 72889536 -77894017 - L2 LINE L2 0 3313 3234 364 329 138 0 chr11 72889602 72889848 -77893705 + L2 LINE L2 2993 3272 0 269 250 164 3 chr11 72990040 72990154 -77793399 + MIR SINE MIR 31 161 -47 1785 157 20 13 chr11 72990597 72990902 -77792651 - AluJb SINE Alu -5 307 1 304 272 98 54 chr11 72990911 72991279 -77792274 - L1MC5 LINE L1 -30 7931 7548 1983 127 0 20 chr11 72991360 72991660 -77791893 + AluSc SINE Alu 1 294 -15 1774 128 4 4 chr11 72992248 72992513 -77791040 + AluSx SINE Alu 1 265 -47 675 204 168 27 chr11 72992584 72992918 -77790635 - HAL1b LINE L1 -28 1320 940 838 271 119 9 chr11 72993421 72993868 -77789685 - HAL1b LINE L1 -415 933 438 2301 72 0 3 chr11 72993871 72994176 -77789377 - AluY SINE Alu -7 304 1 519 331 66 11 chr11 72994207 72994494 -77789059 - L2 LINE L2 -554 2760 2458 2157 108 0 3 chr11 72995250 72995555 -77787998 - AluSc SINE Alu -5 304 1 1297 168 5 0 chr11 72995682 72995890 -77787663 + AluSx SINE Alu 12 220 -92 303 68 0 0 chr11 72996087 72996131 -77787422 - MER5B DNA MER1_type 0 178 135 498 224 179 19 chr11 72996146 72996302 -77787251 - L1MB5 LINE L1 -287 5887 5707 261 143 0 0 chr11 72996293 72996335 -77787218 + L1MB8 LINE L1 5902 5943 -235 * 597 84 12 12 chr11 72999617 72999700 -77783853 + AluS SINE Alu 2 84 -228 1559 191 11 0 chr11 73000552 73000835 -77782718 - AluJb SINE Alu -26 286 1 1280 123 5 20 chr11 73001067 73001270 -77782283 - AluSg/x SINE Alu -1 309 110 2246 86 7 3 chr11 73001347 73001651 -77781902 + AluSc SINE Alu 1 305 -4 2324 58 3 0 chr11 73002020 73002311 -77781242 + AluY SINE Alu 1 292 -19 1915 155 0 7 chr11 73002509 73002812 -77780741 + AluSx SINE Alu 1 301 -11 1514 121 0 0 chr11 73003144 73003350 -77780203 + AluSp SINE Alu 3 208 -105 291 232 0 0 chr11 73003865 73003934 -77779619 - MIR SINE MIR -118 144 76 274 301 58 38 chr11 73004690 73004849 -77778704 + MIR SINE MIR 3 163 -61 347 280 136 0 chr11 73007393 73007518 -77776035 + MIR SINE MIR 6 147 -115 347 300 81 60 chr11 73007523 73007920 -77775633 - L2 LINE L2 -18 3254 2850 189 303 45 0 chr11 73007906 73007972 -77775581 + MIR SINE MIR 137 205 -57 * 2212 101 13 7 chr11 73008199 73008505 -77775048 + AluSq SINE Alu 1 308 -5 883 214 16 0 chr11 73009202 73009384 -77774169 + MER53 DNA DNA 5 189 0 325 260 0 52 chr11 73009978 73010074 -77773479 - MIR SINE MIR -70 192 102 370 364 70 15 chr11 73010395 73010728 -77772825 + L1ME3A LINE L1 5611 5963 -158 2185 78 3 0 chr11 73010759 73011043 -77772510 + L1PA8 LINE L1 5886 6170 -2 1429 134 26 146 chr11 73011164 73011514 -77772039 - AluSg SINE Alu -2 308 1 2108 114 13 0 chr11 73012130 73012429 -77771124 - AluSx SINE Alu -9 303 1 1066 190 14 36 chr11 73013294 73013515 -77770038 - MER58A DNA MER1_type 0 224 9 2745 132 56 30 chr11 73013922 73014098 -77769455 + L1MA8 LINE L1 5775 5945 -346 1665 186 6 6 chr11 73014098 73014410 -77769143 + AluJo SINE Alu 1 312 0 2745 132 56 30 chr11 73014410 73014733 -77768820 + L1MA8 LINE L1 5945 6287 -4 25 0 0 0 chr11 73014760 73014785 -77768768 + AT_rich Low_complexity Low_complexity 1 25 0 2069 123 7 13 chr11 73014790 73015099 -77768454 - AluSx SINE Alu -3 309 3 25 31 0 0 chr11 73015299 73015331 -77768222 + AT_rich Low_complexity Low_complexity 1 32 0 1172 158 55 0 chr11 73015334 73015536 -77768017 + AluSx SINE Alu 4 216 -96 265 359 26 6 chr11 73015536 73015692 -77767861 + L2 LINE L2 2124 2282 -1032 2187 112 0 0 chr11 73016876 73017179 -77766374 + AluSx SINE Alu 1 303 -9 408 310 54 22 chr11 73017182 73017366 -77766187 - MIR SINE MIR -32 230 41 657 246 34 34 chr11 73017447 73017626 -77765927 + MER20 DNA MER1_type 39 217 -2 291 232 0 0 chr11 73018707 73018776 -77764777 + MIR SINE MIR 76 144 -118 228 244 360 0 chr11 73019495 73019581 -77763972 + MIR SINE MIR 28 144 -118 270 275 64 18 chr11 73021360 73021469 -77762084 + MER103 DNA DNA 53 166 0 240 229 66 0 chr11 73021586 73021647 -77761906 + MIR SINE MIR 82 146 -62 2286 95 0 3 chr11 73022929 73023233 -77760320 - AluSc SINE Alu -6 303 1 569 252 15 7 chr11 73023369 73023504 -77760049 + Tigger1 DNA MER2_type 22 157 -2261 554 137 155 169 chr11 73023493 73023516 -77760037 + Tigger1 DNA MER2_type 2202 2224 -194 * 1764 131 57 30 chr11 73023516 73023814 -77759739 - AluJb SINE Alu -6 306 1 554 137 155 169 chr11 73023814 73023887 -77759666 + Tigger1 DNA MER2_type 2224 2296 -122 1922 138 0 7 chr11 73023887 73024184 -77759369 - AluSx SINE Alu -17 295 1 554 137 155 169 chr11 73024184 73024204 -77759349 + Tigger1 DNA MER2_type 2296 2315 -103 1573 126 4 8 chr11 73024204 73024443 -77759110 - AluSq SINE Alu -75 238 1 554 137 155 169 chr11 73024443 73024543 -77759010 + Tigger1 DNA MER2_type 2315 2417 -1 344 321 41 1 chr11 73024556 73024698 -77758855 - MIR3 SINE MIR -52 156 27 189 238 48 0 chr11 73026546 73026588 -77756965 - MIR SINE MIR -135 73 30 1986 117 3 3 chr11 73027327 73027610 -77755943 + AluSx SINE Alu 1 283 -29 392 284 135 7 chr11 73030282 73030430 -77753123 + MIR SINE MIR 20 186 -76 1841 98 4 0 chr11 73030497 73030742 -77752811 - AluSx SINE Alu -15 297 52 1175 201 54 117 chr11 73031059 73031165 -77752388 - MLT1B LTR MaLR -7 383 272 791 156 0 22 chr11 73031165 73031300 -77752253 + FLAM_C SINE Alu 1 132 -1 1175 201 54 117 chr11 73031300 73031602 -77751951 - MLT1B LTR MaLR -118 272 1 182 318 47 12 chr11 73031644 73031729 -77751824 - MIR SINE MIR -63 145 58 461 206 20 0 chr11 73031841 73031943 -77751610 - MIR SINE MIR -92 170 67 2084 101 0 35 chr11 73031944 73032262 -77751291 - AluSx SINE Alu -5 307 1 383 258 84 54 chr11 73033092 73033137 -77750416 - MIR SINE MIR -24 238 196 2325 105 0 0 chr11 73033137 73033446 -77750107 - AluSx SINE Alu -18 294 1 383 258 84 54 chr11 73033446 73033567 -77749986 - MIR SINE MIR -66 196 67 228 172 112 7 chr11 73035130 73035218 -77748335 + MIR SINE MIR 56 145 -63 1445 269 104 44 chr11 73039519 73039963 -77743590 - L1ME2 LINE L1 0 6164 5748 2163 107 10 10 chr11 73039963 73040262 -77743291 + AluSx SINE Alu 1 299 -13 1445 269 104 44 chr11 73040262 73040615 -77742938 - L1ME2 LINE L1 -416 5748 5293 2232 110 0 10 chr11 73040615 73040914 -77742639 + AluSp SINE Alu 1 296 -17 1445 269 104 44 chr11 73040914 73041078 -77742475 - L1ME2 LINE L1 -871 5293 5140 3484 178 104 54 chr11 73041079 73041580 -77741973 + MER21A LTR ERV1 6 569 -362 787 148 8 8 chr11 73041580 73041708 -77741845 + FLAM_A SINE Alu 1 128 -5 3484 178 104 54 chr11 73041708 73042070 -77741483 + MER21A LTR ERV1 569 912 -19 3631 248 81 36 chr11 73042095 73042171 -77741382 - L1ME2 LINE L1 -1004 5142 5071 2483 83 0 0 chr11 73042171 73042471 -77741082 - AluY SINE Alu -11 300 1 3631 248 81 36 chr11 73042471 73042741 -77740812 - L1ME2 LINE L1 -1075 5071 4815 1724 163 30 10 chr11 73042741 73043041 -77740512 - AluJo SINE Alu -4 308 3 3631 248 81 36 chr11 73043041 73043748 -77739805 - L1ME2 LINE L1 -1331 4815 4011 2355 94 7 0 chr11 73043748 73044047 -77739506 - AluSp SINE Alu -12 301 1 3631 248 81 36 chr11 73044047 73044343 -77739210 - L1ME2 LINE L1 -2135 4011 3730 1542 227 67 101 chr11 73044348 73044885 -77738668 - L1ME2 LINE L1 -3103 3043 2489 2426 47 0 27 chr11 73044885 73045184 -77738369 - AluY SINE Alu -20 291 1 2150 114 0 4 chr11 73045184 73045463 -77738090 - AluSq SINE Alu -34 279 1 1542 227 67 101 chr11 73045463 73045646 -77737907 - L1ME2 LINE L1 -3655 2491 2347 2432 100 3 0 chr11 73045997 73046307 -77737246 - AluSx SINE Alu -1 311 1 1896 159 24 3 chr11 73048118 73048408 -77735145 + AluJo SINE Alu 1 296 -16 1794 141 39 62 chr11 73048522 73048906 -77734647 + THE1C LTR MaLR 1 375 0 2247 113 7 3 chr11 73049032 73049333 -77734220 + AluSx SINE Alu 3 304 -8 2179 127 0 3 chr11 73050320 73050619 -77732934 + AluJb SINE Alu 1 298 -14 1512 196 45 0 chr11 73052236 73052502 -77731051 + AluJb SINE Alu 13 290 -22 2079 149 7 0 chr11 73053325 73053621 -77729932 - AluJo SINE Alu -14 298 1 308 253 95 68 chr11 73054016 73054237 -77729316 + L2 LINE L2 2951 3177 -136 2296 105 3 0 chr11 73054308 73054604 -77728949 + AluSc SINE Alu 1 297 -12 290 318 93 40 chr11 73055820 73056187 -77727366 - L3 LINE CR1 -6 1571 1119 236 355 57 0 chr11 73056355 73056479 -77727074 - L3 LINE CR1 -561 1016 886 346 392 37 25 chr11 73056521 73056766 -77726787 + MIR SINE MIR 3 250 -12 2045 134 0 22 chr11 73057167 73057481 -77726072 + AluJo SINE Alu 1 307 -5 392 200 0 12 chr11 73057501 73057581 -77725972 - MER116 DNA Mariner 0 80 2 1624 178 14 27 chr11 73057615 73057907 -77725646 + AluJo SINE Alu 1 288 -24 312 309 72 10 chr11 73058135 73058232 -77725321 - L1ME3A LINE L1 -240 5930 5828 1099 57 0 0 chr11 73058277 73058401 -77725152 + AluSp SINE Alu 1 124 -189 253 217 0 0 chr11 73058648 73058708 -77724845 - MER91A DNA MER1_type -136 60 1 182 116 0 116 chr11 73059465 73059508 -77724045 - L2 LINE L2 -11 3261 3224 * 378 261 30 52 chr11 73059479 73059613 -77723940 - MIR SINE MIR -14 248 118 809 86 19 0 chr11 73060277 73060382 -77723171 + FLAM_C SINE Alu 1 107 -36 2287 110 0 7 chr11 73061577 73061885 -77721668 + AluSx SINE Alu 1 306 -6 404 313 8 8 chr11 73062176 73062307 -77721246 - L2 LINE L2 0 3272 3142 253 286 151 5 chr11 73062734 73062926 -77720627 + MER112 DNA MER1_type 31 250 -10 307 263 30 45 chr11 73063022 73063155 -77720398 - L2 LINE L2 -1376 1938 1808 1254 229 50 73 chr11 73063237 73063542 -77720011 + L1MC4a LINE L1 7339 7649 -159 1730 136 41 37 chr11 73063542 73063836 -77719717 - AluSq SINE Alu 0 313 19 1254 229 50 73 chr11 73063836 73063953 -77719600 + L1MC4a LINE L1 7649 7751 -57 2462 64 3 7 chr11 73063953 73064250 -77719303 - AluY SINE Alu -15 296 1 1254 229 50 73 chr11 73064250 73064306 -77719247 + L1MC4a LINE L1 7751 7807 -1 419 229 76 23 chr11 73064583 73064714 -77718839 - L2 LINE L2 -1285 2029 1892 2128 119 20 13 chr11 73064964 73065266 -77718287 - AluSg SINE Alu -6 304 1 22 35 0 0 chr11 73066697 73066726 -77716827 + AT_rich Low_complexity Low_complexity 1 29 0 2259 110 0 7 chr11 73068582 73068882 -77714671 + AluSq SINE Alu 1 298 -15 228 292 0 0 chr11 73068931 73069020 -77714533 + L1MC4 LINE L1 6614 6702 -1340 313 232 0 0 chr11 73069023 73069079 -77714474 - L1MC4 LINE L1 -1339 6703 6648 450 209 126 0 chr11 73069238 73069429 -77714124 + L1MC5 LINE L1 7606 7820 -141 667 217 146 7 chr11 73070742 73071023 -77712530 - L1MC5 LINE L1 -36 7925 7606 336 175 0 0 chr11 73071180 73071243 -77712310 + (TA)n Simple_repeat Simple_repeat 1 63 0 2023 122 0 4 chr11 73071343 73071614 -77711939 + AluSx SINE Alu 30 299 -13 205 310 136 7 chr11 73071741 73071904 -77711649 + MIR SINE MIR 59 243 -19 246 296 97 45 chr11 73072628 73072804 -77710749 - MIR SINE MIR -70 192 8 2235 105 6 10 chr11 73072820 73073133 -77710420 - AluJb SINE Alu 0 312 1 763 204 10 46 chr11 73073609 73073805 -77709748 - LOR1a LTR ERV1 0 497 309 291 287 19 59 chr11 73074235 73074265 -77709288 - MIR SINE MIR -57 151 121 2397 103 0 0 chr11 73074265 73074567 -77708986 - AluSx SINE Alu -10 302 1 291 287 19 59 chr11 73074567 73074704 -77708849 - MIR SINE MIR -87 121 30 251 275 11 22 chr11 73075250 73075341 -77708212 + MIR SINE MIR 63 152 -110 489 255 150 0 chr11 73075428 73075581 -77707972 + MIR SINE MIR 12 187 -75 180 0 0 0 chr11 73076018 73076038 -77707515 + (CTGGGG)n Simple_repeat Simple_repeat 1 20 0 273 196 0 18 chr11 73076644 73076700 -77706853 - FLAM_A SINE Alu -10 123 69 743 240 229 0 chr11 73077927 73078206 -77705347 + L1MD3 LINE L1 6776 7118 -877 1206 194 93 19 chr11 73078211 73078535 -77705018 + L1M2 LINE L1 2471 2818 -4031 238 238 0 32 chr11 73078545 73078608 -77704945 + MLT1F1 LTR MaLR 59 119 -448 667 276 56 4 chr11 73078614 73078846 -77704707 + L1MD3 LINE L1 7410 7653 -342 564 230 8 0 chr11 73078861 73078987 -77704566 + L1MD3 LINE L1 7733 7859 -136 1248 176 5 14 chr11 73078991 73079201 -77704352 - AluJo SINE Alu -104 208 1 620 152 0 0 chr11 73079243 73079348 -77704205 + L1MC3 LINE L1 7681 7785 0 2385 100 0 3 chr11 73079356 73079657 -77703896 + AluSx SINE Alu 1 300 -12 1906 160 0 19 chr11 73082425 73082732 -77700821 + AluSx SINE Alu 1 301 -11 241 311 22 11 chr11 73083536 73083626 -77699927 - MIR SINE MIR -79 129 39 240 247 46 11 chr11 73083845 73083936 -77699617 - MIR SINE MIR -56 152 80 221 100 50 0 chr11 73084523 73084563 -77698990 + (TTCA)n Simple_repeat Simple_repeat 2 43 0 442 333 64 10 chr11 73084803 73085007 -77698546 - L2 LINE L2 -236 3077 2863 551 174 51 0 chr11 73085098 73085196 -77698357 - FLAM_C SINE Alu -11 132 30 241 315 14 0 chr11 73085549 73085622 -77697931 - MIR SINE MIR -86 122 49 282 250 28 0 chr11 73085802 73085874 -77697679 + MIR SINE MIR 48 121 -141 1406 235 75 31 chr11 73086499 73086870 -77696683 + L2 LINE L2 2762 3163 -150 2186 121 0 0 chr11 73086870 73087175 -77696378 - AluSx SINE Alu -7 305 1 1406 235 75 31 chr11 73087175 73087329 -77696224 + L2 LINE L2 3163 3309 -4 212 232 71 0 chr11 73088244 73088300 -77695253 + MIR SINE MIR 92 151 -111 768 286 79 4 chr11 73089171 73089398 -77694155 + MIR SINE MIR 13 256 -6 255 296 65 9 chr11 73089993 73090101 -77693452 - MIR SINE MIR -70 192 79 382 350 31 0 chr11 73090924 73091084 -77692469 + MIR SINE MIR 24 188 -74 1452 188 136 59 chr11 73091398 73091855 -77691698 + LTR54B LTR ERV1 3 494 -4 22 56 0 0 chr11 73092972 73093008 -77690545 + AT_rich Low_complexity Low_complexity 1 36 0 1646 194 47 42 chr11 73093155 73093562 -77689991 + LTR2 LTR ERV1 41 449 0 194 385 0 0 chr11 73093563 73093628 -77689925 + MIR3 SINE MIR 109 173 -35 218 226 19 0 chr11 73094508 73094561 -77688992 - MIR SINE MIR -85 123 70 205 254 100 5 chr11 73095011 73095127 -77688426 + MIR SINE MIR 28 146 -62 496 245 151 10 chr11 73095181 73095356 -77688197 + MIR SINE MIR 26 221 -41 203 61 30 0 chr11 73095457 73095490 -77688063 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 457 321 31 0 chr11 73095577 73095739 -77687814 + MIR SINE MIR 85 251 -11 266 180 20 0 chr11 73095955 73096005 -77687548 - L2 LINE L2 0 3272 3222 272 241 206 57 chr11 73096819 73096850 -77686703 - LTR33A LTR ERVL 0 523 498 207 24 49 24 chr11 73096850 73096891 -77686662 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 1623 130 25 56 chr11 73096894 73097178 -77686375 - AluJb SINE Alu -37 275 1 272 241 206 57 chr11 73097178 73097370 -77686183 - LTR33A LTR ERVL -26 497 262 1174 123 6 6 chr11 73097375 73097546 -77686007 + AluSx SINE Alu 29 199 -113 480 246 69 51 chr11 73098534 73098709 -77684844 - MIR SINE MIR -36 226 49 198 209 0 0 chr11 73098741 73098784 -77684769 + (CA)n Simple_repeat Simple_repeat 1 43 0 40 21 0 0 chr11 73099062 73099109 -77684444 + GC_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr11 73099320 73099357 -77684196 + GC_rich Low_complexity Low_complexity 1 37 0 330 26 0 0 chr11 73100737 73100776 -77682777 + (TG)n Simple_repeat Simple_repeat 1 39 0 2007 139 17 0 chr11 73100794 73101095 -77682458 - AluSx SINE Alu -4 308 3 1509 185 57 20 chr11 73101276 73101574 -77681979 - AluJo SINE Alu -2 310 2 341 327 122 19 chr11 73101705 73101734 -77681819 - MIR SINE MIR -24 238 213 2274 103 3 3 chr11 73101734 73102046 -77681507 - AluSx SINE Alu 0 312 1 341 327 122 19 chr11 73102046 73102221 -77681332 - MIR SINE MIR -49 213 13 2090 108 18 0 chr11 73102290 73102576 -77680977 - AluSx SINE Alu -21 291 1 282 229 148 0 chr11 73103069 73103167 -77680386 - MIR SINE MIR -63 145 35 301 303 25 25 chr11 73103441 73103560 -77679993 + MIR3 SINE MIR 14 132 -76 719 203 8 0 chr11 73103884 73104012 -77679541 - FLAM_A SINE Alu -2 131 3 1338 158 4 34 chr11 73104024 73104258 -77679295 - AluJo SINE Alu 0 312 86 242 222 0 97 chr11 73104752 73104824 -77678729 - L2 LINE L2 -194 3078 3014 282 192 39 0 chr11 73106374 73106452 -77677101 - MER53 DNA DNA 0 189 109 196 357 70 23 chr11 73108577 73108706 -77674847 - MIR3 SINE MIR -63 145 11 2179 92 6 16 chr11 73109669 73109983 -77673570 + AluSq SINE Alu 1 311 -2 1953 131 13 13 chr11 73109995 73110307 -77673246 + AluSx SINE Alu 1 312 0 1649 130 32 0 chr11 73110320 73110567 -77672986 + AluJo SINE Alu 1 255 -57 255 284 15 0 chr11 73110652 73110719 -77672834 - MER112 DNA MER1_type -175 85 18 2237 104 3 16 chr11 73113877 73114194 -77669359 - AluSq SINE Alu 0 313 1 625 240 29 59 chr11 73114261 73114351 -77669202 + L1MEd LINE L1 23 114 -6005 2214 107 10 0 chr11 73114351 73114659 -77668894 + AluSq SINE Alu 1 311 -2 625 240 29 59 chr11 73114659 73114772 -77668781 + L1MEd LINE L1 114 220 -5899 524 270 207 36 chr11 73114800 73115070 -77668483 + L1MEd LINE L1 298 521 -5598 2158 83 17 3 chr11 73115070 73115359 -77668194 + AluSq SINE Alu 1 293 -20 524 270 207 36 chr11 73115359 73115499 -77668054 + L1MEd LINE L1 521 778 -5341 336 276 0 24 chr11 73115546 73115669 -77667884 + MLT1E LTR MaLR 1 120 -473 628 231 0 8 chr11 73115671 73115862 -77667691 - FLAM_C SINE Alu 0 191 2 2149 93 21 0 chr11 73115872 73116161 -77667392 - AluSx SINE Alu -17 295 1 251 237 13 40 chr11 73116169 73116245 -77667308 + MLT1E3 LTR MaLR 12 85 -569 293 291 37 9 chr11 73116260 73116475 -77667078 + MLT1E3 LTR MaLR 193 397 -227 1726 206 108 16 chr11 73116479 73117487 -77666066 - SATR1 Satellite Satellite -1 1101 1 324 213 12 53 chr11 73117578 73117747 -77665806 + (TTA)n Simple_repeat Simple_repeat 3 164 0 22 88 0 0 chr11 73117798 73117855 -77665698 + AT_rich Low_complexity Low_complexity 1 57 0 1957 198 112 8 chr11 73117862 73120059 -77663494 - SATR1 Satellite Satellite -1 2425 1 26324 99 14 12 chr11 73120405 73124461 -77659092 + HERVE LTR ERV1 1108 5171 -2642 1973 182 116 31 chr11 73124461 73126864 -77656689 - SATR1 Satellite Satellite -144 2606 1 1397 119 27 14 chr11 73126894 73127113 -77656440 - AluSq SINE Alu -91 222 1 748 228 46 0 chr11 73129000 73129197 -77654356 + MER6B DNA MER2_type 5 210 0 381 280 20 33 chr11 73129302 73129452 -77654101 - MER5B DNA MER1_type -6 172 25 2008 133 0 31 chr11 73129595 73129918 -77653635 - AluSp SINE Alu 0 313 1 241 266 105 35 chr11 73129923 73130066 -77653487 - HsTC2 DNA Tc2 -113 1785 1633 1134 256 2 60 chr11 73130104 73130287 -77653266 + L1MA4 LINE L1 5767 5959 -341 1692 173 0 3 chr11 73130287 73130571 -77652982 + AluSx SINE Alu 1 283 -29 1134 256 2 60 chr11 73130571 73130805 -77652748 + L1MA4 LINE L1 5959 6160 -140 2071 107 3 3 chr11 73130854 73131154 -77652399 - AluSp SINE Alu -13 300 1 2902 243 20 27 chr11 73131199 73132196 -77651357 + L1MB3 LINE L1 4818 5821 -362 1867 138 3 7 chr11 73132196 73132545 -77651008 + AluSx SINE Alu 1 348 0 2902 243 20 27 chr11 73132545 73132636 -77650917 + L1MB3 LINE L1 5821 5911 -272 1880 134 35 0 chr11 73132636 73132919 -77650634 + AluSx SINE Alu 3 295 -17 2902 243 20 27 chr11 73132919 73133171 -77650382 + L1MB3 LINE L1 5911 6153 -30 24 32 0 0 chr11 73133191 73133222 -77650331 + AT_rich Low_complexity Low_complexity 1 31 0 3416 213 15 74 chr11 73133680 73134710 -77648843 + LTR5 LTR ERVK 1 969 0 346 377 45 14 chr11 73135029 73135249 -77648304 - MIR SINE MIR -4 258 32 2120 125 0 31 chr11 73135643 73135963 -77647590 + AluSg SINE Alu 1 310 0 279 235 31 10 chr11 73137087 73137185 -77646368 + L1M4 LINE L1 4623 4722 -1424 492 62 0 0 chr11 73137193 73137257 -77646296 + (TA)n Simple_repeat Simple_repeat 2 65 0 316 269 99 40 chr11 73137262 73137485 -77646068 - L1M4 LINE L1 -3189 2957 2722 186 156 0 0 chr11 73137491 73137536 -77646017 + T-rich Low_complexity Low_complexity 1 45 0 432 172 33 32 chr11 73137934 73138061 -77645492 - MLT1J1 LTR MaLR -312 134 1 326 300 46 23 chr11 73138069 73138199 -77645354 - L1M4 LINE L1 -3594 2552 2420 237 295 133 9 chr11 73138269 73138374 -77645179 - MIR3 SINE MIR -54 154 43 3781 123 172 88 chr11 73138475 73139871 -77643682 - pTR5 LTR ERV1 0 2438 743 531 301 218 35 chr11 73141165 73141852 -77641701 + L2 LINE L2 2243 3122 -191 2151 125 7 7 chr11 73141852 73142148 -77641405 - AluSq SINE Alu -17 296 1 531 301 218 35 chr11 73142148 73142331 -77641222 + L2 LINE L2 3122 3270 -43 347 224 12 35 chr11 73142461 73142546 -77641007 - MER5A DNA MER1_type 0 189 107 434 273 170 12 chr11 73142552 73142717 -77640836 + L2 LINE L2 2515 2705 -609 1433 175 38 4 chr11 73142727 73142967 -77640586 - AluJb SINE Alu -23 289 42 273 140 0 0 chr11 73143036 73143093 -77640460 + (TC)n Simple_repeat Simple_repeat 2 58 0 2457 68 0 0 chr11 73143738 73144030 -77639523 + AluY SINE Alu 1 292 -19 197 56 0 56 chr11 73144260 73144296 -77639257 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2052 125 4 0 chr11 73144298 73144577 -77638976 - AluSc SINE Alu -29 280 1 193 333 17 0 chr11 73144828 73144888 -77638665 + MIR SINE MIR 15 75 -187 2749 217 55 7 chr11 73144893 73145496 -77638057 - ERVL LTR ERVL -3615 2149 1518 520 260 16 0 chr11 73145512 73145635 -77637918 + MIR SINE MIR 99 223 -39 294 283 97 9 chr11 73145725 73145838 -77637715 - L2 LINE L2 -13 3300 3178 491 282 106 72 chr11 73146310 73146753 -77636800 + L2 LINE L2 2804 3261 -11 636 298 16 36 chr11 73148875 73149123 -77634430 + MIR SINE MIR 8 250 -12 1663 177 25 0 chr11 73149206 73149489 -77634064 + AluJb SINE Alu 1 290 -22 603 246 34 34 chr11 73150788 73150967 -77632586 - MER20 DNA MER1_type -2 217 39 443 310 54 22 chr11 73151048 73151232 -77632321 + MIR SINE MIR 41 230 -32 2313 112 0 0 chr11 73151235 73151538 -77632015 - AluSx SINE Alu -9 303 1 276 361 26 0 chr11 73152722 73152877 -77630676 - L2 LINE L2 -1032 2282 2124 1393 137 54 0 chr11 73152877 73153082 -77630471 - AluSx SINE Alu -96 216 1 25 31 0 0 chr11 73153082 73153114 -77630439 + AT_rich Low_complexity Low_complexity 1 32 0 2213 120 7 13 chr11 73153314 73153623 -77629930 + AluSx SINE Alu 3 309 -3 25 0 0 0 chr11 73153628 73153653 -77629900 + AT_rich Low_complexity Low_complexity 1 25 0 2597 134 56 30 chr11 73153680 73154003 -77629550 - L1MA8 LINE L1 -4 6287 5945 1833 183 6 3 chr11 73154003 73154314 -77629239 - AluJo SINE Alu 0 312 1 2597 134 56 30 chr11 73154314 73154490 -77629063 - L1MA8 LINE L1 -346 5945 5775 1024 190 14 36 chr11 73154897 73155118 -77628435 + MER58A DNA MER1_type 9 224 0 2238 111 14 0 chr11 73155984 73156281 -77627272 + AluSx SINE Alu 1 301 -11 1548 134 26 146 chr11 73156899 73157249 -77626304 + AluSg SINE Alu 1 308 -2 2167 78 3 0 chr11 73157370 73157654 -77625899 - L1PA8 LINE L1 -2 6170 5886 287 389 22 0 chr11 73157833 73158018 -77625535 - L1MC/D LINE L1 -2009 5799 5611 334 260 0 52 chr11 73158339 73158435 -77625118 + MIR SINE MIR 102 192 -70 813 214 16 0 chr11 73159029 73159211 -77624342 - MER53 DNA DNA 0 189 5 2340 101 13 7 chr11 73159908 73160214 -77623339 - AluSq SINE Alu -5 308 1 191 303 45 0 chr11 73160441 73160507 -77623046 - MIR SINE MIR -57 205 137 * 401 315 78 58 chr11 73160493 73160890 -77622663 + L2 LINE L2 2850 3254 -18 374 232 168 32 chr11 73160895 73161020 -77622533 - MIR SINE MIR -115 147 6 654 181 0 0 chr11 73162055 73162199 -77621354 + (TCCA)n Simple_repeat Simple_repeat 1 144 0 507 248 0 0 chr11 73162248 73162483 -77621070 + (TCCA)n Simple_repeat Simple_repeat 1 235 0 187 283 0 0 chr11 73162498 73162544 -77621009 - L2 LINE L2 -1 3312 3267 488 270 167 9 chr11 73162557 73162772 -77620781 + MIR SINE MIR 12 260 -2 240 348 34 17 chr11 73162869 73162987 -77620566 - L2 LINE L2 -163 3109 2990 222 346 9 37 chr11 73163184 73163291 -77620262 + MIR SINE MIR 113 216 -46 2296 122 3 0 chr11 73163405 73163716 -77619837 + AluSx SINE Alu 1 312 0 212 167 0 0 chr11 73163906 73163948 -77619605 + A-rich Low_complexity Low_complexity 1 42 0 291 242 164 3 chr11 73164070 73164184 -77619369 + MIR SINE MIR 31 161 -47 185 216 20 59 chr11 73164285 73164336 -77619217 + MER5A DNA MER1_type 119 167 -22 1926 158 20 10 chr11 73164627 73164931 -77618622 - AluJb SINE Alu -5 307 1 371 244 98 73 chr11 73164933 73165249 -77618304 - L1MC5 LINE L1 -28 7933 7610 2169 120 0 20 chr11 73165387 73165686 -77617867 + AluSc SINE Alu 1 293 -16 1865 132 4 4 chr11 73166274 73166539 -77617014 + AluSx SINE Alu 1 265 -47 697 201 168 27 chr11 73166610 73166944 -77616609 - HAL1b LINE L1 -28 1320 940 816 271 119 9 chr11 73167447 73167894 -77615659 - HAL1b LINE L1 -415 933 438 2201 110 0 16 chr11 73167897 73168206 -77615347 - AluY SINE Alu -7 304 1 282 256 49 0 chr11 73168479 73168561 -77614992 - L2 LINE L2 -220 3052 2967 1269 196 33 135 chr11 73168576 73169035 -77614518 + MLT2B1 LTR ERVL 3 414 0 423 0 0 0 chr11 73169424 73169471 -77614082 + (TGG)n Simple_repeat Simple_repeat 2 48 0 591 76 0 0 chr11 73169639 73169718 -77613835 + MADE1 DNA Mariner 2 80 0 543 348 21 17 chr11 73171085 73171375 -77612178 + MLT1I LTR MaLR 116 406 -3 429 20 0 0 chr11 73171389 73171439 -77612114 + (TG)n Simple_repeat Simple_repeat 1 50 0 348 223 113 93 chr11 73172536 73172591 -77610962 + L1ME3A LINE L1 5874 5926 -244 778 231 27 36 chr11 73172591 73172812 -77610741 - MER20 DNA MER1_type 0 219 1 348 223 113 93 chr11 73172812 73172960 -77610593 + L1ME3A LINE L1 5926 6087 -83 1782 155 7 32 chr11 73172960 73173270 -77610283 - AluJo SINE Alu -10 302 1 348 223 113 93 chr11 73173270 73173356 -77610197 + L1ME3A LINE L1 6087 6170 0 1929 163 10 0 chr11 73173709 73173998 -77609555 - AluSx SINE Alu -18 294 3 2072 125 11 0 chr11 73174204 73174491 -77609062 + AluSx SINE Alu 1 290 -22 1272 201 15 4 chr11 73175148 73175261 -77608292 - L1M4 LINE L1 -565 5609 5499 2138 136 3 3 chr11 73175261 73175570 -77607983 - AluSx SINE Alu -3 309 1 1272 201 15 4 chr11 73175570 73175725 -77607828 - L1M4 LINE L1 -675 5499 5338 1097 265 129 14 chr11 73175728 73176154 -77607399 + L1MB5 LINE L1 5646 6120 -54 1172 172 0 29 chr11 73176227 73176436 -77607117 + AluJo SINE Alu 1 203 -109 473 94 0 0 chr11 73176440 73176504 -77607049 + AluSg/x SINE Alu 74 137 -173 809 158 8 0 chr11 73177381 73177501 -77606052 + AluSg/x SINE Alu 128 248 -62 1145 134 25 40 chr11 73177501 73177702 -77605851 + AluJo SINE Alu 85 282 -30 467 81 0 27 chr11 73177704 73177778 -77605775 + (CATA)n Simple_repeat Simple_repeat 2 73 0 259 244 181 39 chr11 73177950 73178077 -77605476 - MIR SINE MIR -25 237 93 2506 153 16 18 chr11 73178077 73178523 -77605030 - L1MA7 LINE L1 -232 6059 5615 1000 146 90 0 chr11 73178523 73178734 -77604819 + L1MA7 LINE L1 6055 6285 -6 208 233 58 105 chr11 73178752 73178838 -77604715 - MIR SINE MIR -156 106 25 243 0 0 0 chr11 73179606 73179633 -77603920 + (T)n Simple_repeat Simple_repeat 1 27 0 280 217 19 142 chr11 73179697 73179803 -77603750 - L2 LINE L2 -7 3265 3173 3462 201 25 76 chr11 73180677 73181698 -77601855 - LTR5 LTR ERVK 0 969 1 1074 169 0 0 chr11 73181700 73181878 -77601675 - HERVK LTR ERVK -2 7241 7064 382 240 8 31 chr11 73181996 73182125 -77601428 + CT-rich Low_complexity Low_complexity 1 126 0 2566 96 8 0 chr11 73182227 73182592 -77600961 - HERVK LTR ERVK -1720 5523 5156 1018 136 28 0 chr11 73182990 73183167 -77600386 - L1MA4 LINE L1 -9 6291 6110 4975 152 34 37 chr11 73183175 73184326 -77599227 + L1PB1 LINE L1 4295 5433 -718 2385 99 0 6 chr11 73184326 73184638 -77598915 + AluSg SINE Alu 1 310 0 4975 152 34 37 chr11 73184638 73185354 -77598199 + L1PB1 LINE L1 5433 6150 -1 706 164 113 9 chr11 73185359 73185566 -77597987 - L1MA4 LINE L1 -178 6824 6601 3742 138 10 0 chr11 73185625 73186220 -77597333 - L1MA4 LINE L1 -373 6629 6029 1270 199 4 0 chr11 73186188 73186449 -77597104 - L1P LINE L1 -927 5921 5660 * 14193 186 36 24 chr11 73186449 73186881 -77596672 - L1MA4 LINE L1 -940 5908 5483 465 19 0 0 chr11 73186881 73186935 -77596618 + (TG)n Simple_repeat Simple_repeat 2 55 0 14193 186 36 24 chr11 73186935 73186950 -77596603 - L1MA4 LINE L1 -1365 5483 5470 1680 98 137 32 chr11 73186950 73187227 -77596326 - AluSc SINE Alu -3 306 1 14193 186 36 24 chr11 73187227 73187710 -77595843 - L1MA4 LINE L1 -1378 5470 4994 2238 110 13 13 chr11 73187710 73188020 -77595533 - AluSx SINE Alu -2 310 1 14193 186 36 24 chr11 73188020 73189035 -77594518 - L1MA4 LINE L1 -1854 4994 3993 195 42 0 0 chr11 73189035 73189059 -77594494 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 14193 186 36 24 chr11 73189059 73190210 -77593343 - L1MA4 LINE L1 -2855 3993 2858 2008 159 48 14 chr11 73190210 73190562 -77592991 + THE1B LTR MaLR 1 364 0 10917 105 29 11 chr11 73190562 73192114 -77591439 + THE1B-int LTR MaLR 1 1580 0 2193 126 48 31 chr11 73192114 73192472 -77591081 + THE1B LTR MaLR 1 364 0 14193 186 36 24 chr11 73192472 73192707 -77590846 - L1MA4 LINE L1 -3990 2858 2627 986 176 0 13 chr11 73192707 73192866 -77590687 - FRAM SINE Alu -5 161 5 14193 186 36 24 chr11 73192866 73193912 -77589641 - L1MA4 LINE L1 -4221 2627 1460 2271 112 3 0 chr11 73193912 73194217 -77589336 - AluSg SINE Alu -4 306 1 14193 186 36 24 chr11 73194217 73194628 -77588925 - L1MA4 LINE L1 -5388 1460 1056 850 272 14 0 chr11 73194845 73195062 -77588491 - MER58A DNA MER1_type -1 223 4 1631 204 7 3 chr11 73195179 73195473 -77588080 + AluJo SINE Alu 1 295 -17 431 167 39 98 chr11 73195656 73195758 -77587795 - MLT1H LTR MaLR 0 549 454 653 256 96 48 chr11 73195759 73196052 -77587501 - MLT1H LTR MaLR -202 347 41 2184 102 3 3 chr11 73197004 73197299 -77586254 + AluSc SINE Alu 1 295 -14 734 216 56 26 chr11 73197583 73197814 -77585739 + Charlie5 DNA MER1_type 2333 2570 -42 2111 176 24 0 chr11 73197984 73198360 -77585193 + L1MB8 LINE L1 5575 5959 -219 1170 110 75 0 chr11 73198360 73198533 -77585020 + AluSg/x SINE Alu 102 287 -23 918 212 15 5 chr11 73198536 73198739 -77584814 + L1MB8 LINE L1 5974 6178 0 289 309 44 71 chr11 73198742 73198891 -77584662 - L2 LINE L2 -265 3048 2907 2031 124 3 3 chr11 73198891 73199182 -77584371 - AluSq SINE Alu -22 291 1 289 309 44 71 chr11 73199182 73199284 -77584269 - L2 LINE L2 -406 2907 2804 2380 70 0 3 chr11 73199443 73199744 -77583809 - AluY SINE Alu -11 300 1 413 330 42 8 chr11 73199793 73200054 -77583499 - L2 LINE L2 -587 2727 2458 2246 105 0 3 chr11 73200819 73201115 -77582438 - AluSc SINE Alu -14 295 1 1383 164 5 0 chr11 73201242 73201450 -77582103 + AluSx SINE Alu 12 220 -92 290 68 0 0 chr11 73201647 73201691 -77581862 - MER5B DNA MER1_type 0 178 135 555 222 182 23 chr11 73201706 73201882 -77581671 - L1MB5 LINE L1 -287 5887 5684 * 1229 183 18 56 chr11 73201852 73202136 -77581417 + L1MB5 LINE L1 5902 6174 0 925 159 0 0 chr11 73202141 73202279 -77581274 + AluSq/x SINE Alu 2 139 -173 198 355 16 16 chr11 73202296 73202420 -77581133 + MER5A DNA MER1_type 3 126 -63 1872 163 24 0 chr11 73202568 73202863 -77580690 + AluSx SINE Alu 1 302 -10 2074 189 129 7 chr11 73203142 73203592 -77579961 - MLT1E LTR MaLR 0 593 89 7873 44 4 0 chr11 73203592 73204560 -77578993 - L1P LINE L1 -896 5250 4279 693 158 8 16 chr11 73204588 73204715 -77578838 + LTR2B LTR ERV1 272 397 -93 1209 88 6 25 chr11 73204716 73204876 -77578677 - AluSc SINE Alu -152 157 1 1669 224 183 53 chr11 73205006 73205585 -77577968 + MLT1E1 LTR MaLR 1 654 0 2180 125 0 3 chr11 73205596 73205893 -77577660 + AluSc SINE Alu 1 296 -13 187 349 38 9 chr11 73205980 73206086 -77577467 - MIR3 SINE MIR -54 154 46 2244 105 0 0 chr11 73206259 73206544 -77577009 + AluSc SINE Alu 1 285 -24 30 0 0 0 chr11 73206628 73206658 -77576895 + AT_rich Low_complexity Low_complexity 1 30 0 5076 27 0 0 chr11 73206663 73207246 -77576307 - L1PA2 LINE L1 0 6155 5573 934 47 0 0 chr11 73207246 73207353 -77576200 - U6 snRNA snRNA 0 107 1 285 344 7 40 chr11 73207358 73207509 -77576044 - MIR SINE MIR -116 146 1 1948 159 0 0 chr11 73207564 73207860 -77575693 + AluSx SINE Alu 5 300 -12 853 238 42 75 chr11 73207948 73208204 -77575349 + MLT1I LTR MaLR 87 331 -78 1935 151 24 3 chr11 73208204 73208502 -77575051 + AluSx SINE Alu 1 304 -8 853 238 42 75 chr11 73208502 73208577 -77574976 + MLT1I LTR MaLR 331 407 -2 462 268 7 22 chr11 73208909 73209047 -77574506 - L2 LINE L2 0 3272 3137 6220 64 151 66 chr11 73209071 73210151 -77573402 - MER11A LTR ERVK 0 1266 1 805 299 99 28 chr11 73210204 73210834 -77572719 - L2 LINE L2 -218 3054 2346 1457 183 0 59 chr11 73210834 73211156 -77572397 - AluJo SINE Alu -9 303 1 805 299 99 28 chr11 73211156 73211362 -77572191 - L2 LINE L2 -926 2346 2156 1050 111 0 0 chr11 73212190 73212325 -77571228 + AluSq/x SINE Alu 1 135 -178 1578 134 0 5 chr11 73212325 73212549 -77571004 + AluSq SINE Alu 1 223 -90 1074 204 4 48 chr11 73212568 73212685 -77570868 + MER58A DNA MER1_type 1 105 -2315 2352 132 109 0 chr11 73212685 73213071 -77570482 - MSTA LTR MaLR 0 428 1 1074 204 4 48 chr11 73213071 73213184 -77570369 + MER58A DNA MER1_type 105 221 -3 204 102 41 61 chr11 73213194 73213243 -77570310 + GA-rich Low_complexity Low_complexity 3 50 0 212 317 89 8 chr11 73213251 73213374 -77570179 + L3 LINE CR1 1245 1377 -200 4152 106 2 0 chr11 73213381 73213938 -77569615 + LTR6B LTR ERV1 1 558 0 22544 129 22 2 chr11 73213941 73217108 -77566445 + HERVS71 LTR ERV1 5 3236 -5742 14504 130 10 8 chr11 73217117 73219964 -77563589 + HERVS71 LTR ERV1 4870 7786 -1192 2243 108 3 3 chr11 73219961 73220277 -77563276 + HERVS71 LTR ERV1 8594 8909 -69 * 4552 42 14 0 chr11 73220277 73220827 -77562726 + LTR6B LTR ERV1 1 558 0 2334 91 3 0 chr11 73221084 73221381 -77562172 - AluSp SINE Alu -15 298 1 271 276 195 14 chr11 73221999 73222209 -77561344 - MLT1H LTR MaLR 0 595 348 1872 107 186 57 chr11 73222360 73222714 -77560839 - MER4A LTR ERV1 -2 662 263 580 108 0 126 chr11 73222714 73222781 -77560772 - MER4A LTR ERV1 -566 98 49 2197 94 0 27 chr11 73222781 73223079 -77560474 - AluSx SINE Alu -22 290 1 580 108 0 126 chr11 73223079 73223122 -77560431 - MER4A LTR ERV1 -615 49 2 433 239 123 18 chr11 73223122 73223285 -77560268 - MLT1H LTR MaLR -356 193 14 252 86 0 0 chr11 73223290 73223325 -77560228 + (CA)n Simple_repeat Simple_repeat 1 35 0 1777 85 153 0 chr11 73223608 73223856 -77559697 - AluSx SINE Alu -17 295 10 367 260 53 94 chr11 73224051 73224316 -77559237 + MLT1K LTR MaLR 173 426 -162 2095 127 10 0 chr11 73224439 73224746 -77558807 + AluSg SINE Alu 1 310 0 1167 289 23 0 chr11 73224748 73225052 -77558501 + LTR16C LTR ERVL 164 474 -17 279 183 84 14 chr11 73225079 73225150 -77558403 + MLT1K LTR MaLR 512 587 -1 648 109 30 4 chr11 73225572 73225776 -77557777 + AluSx SINE Alu 2 294 -16 658 302 54 48 chr11 73226529 73226860 -77556693 - MLT1I LTR MaLR -8 401 69 214 259 125 27 chr11 73226947 73227059 -77556494 - MIR SINE MIR -137 125 3 338 215 8 74 chr11 73227440 73227561 -77555992 - MER58C DNA MER1_type 0 215 103 1412 203 37 31 chr11 73227572 73227922 -77555631 + L1MB7 LINE L1 5813 6164 -20 1454 212 20 0 chr11 73227922 73228215 -77555338 - AluJo SINE Alu -12 300 2 1860 136 3 52 chr11 73228377 73228686 -77554867 - AluJb SINE Alu -14 298 5 2372 113 0 0 chr11 73228848 73229157 -77554396 - AluSx SINE Alu -3 309 1 601 200 39 0 chr11 73229164 73229294 -77554259 - L1MB4 LINE L1 0 6180 6046 1227 199 25 39 chr11 73229806 73230088 -77553465 - AluJo SINE Alu -34 278 1 1977 167 0 0 chr11 73230113 73230424 -77553129 + AluSx SINE Alu 1 311 -1 22 35 0 0 chr11 73230443 73230472 -77553081 + AT_rich Low_complexity Low_complexity 1 29 0 253 322 59 38 chr11 73230492 73230731 -77552822 + L2 LINE L2 2710 2953 -361 247 274 94 0 chr11 73230884 73231013 -77552540 - L2 LINE L2 -247 3066 2916 42855 53 7 3 chr11 73231120 73233984 -77549569 + L1PA4 LINE L1 1 2852 -3303 8383 48 9 0 chr11 73233984 73234941 -77548612 + LTR5 LTR ERVK 1 966 -3 42855 53 7 3 chr11 73234941 73238199 -77545354 + L1PA4 LINE L1 2852 6155 0 2281 128 3 0 chr11 73238619 73238925 -77544628 + AluSx SINE Alu 1 307 -5 1071 215 24 12 chr11 73238968 73239215 -77544338 - MLT1E1 LTR MaLR 0 654 405 2140 94 33 0 chr11 73239239 73239540 -77544013 + AluSx SINE Alu 1 310 0 986 191 98 8 chr11 73239563 73239809 -77543744 - MLT1E1 LTR MaLR -384 270 3 2525 85 0 0 chr11 73240094 73240401 -77543152 + AluY SINE Alu 1 307 -4 1566 204 45 81 chr11 73240406 73240794 -77542759 - MLT1C LTR MaLR 0 467 98 2429 103 3 0 chr11 73240794 73241105 -77542448 - AluSp SINE Alu -1 312 1 1566 204 45 81 chr11 73241105 73241200 -77542353 - MLT1C LTR MaLR -369 98 1 338 236 42 0 chr11 73241210 73241282 -77542271 + AluJ/FLAM SINE Alu 1 75 -227 1705 173 31 10 chr11 73241323 73241612 -77541941 + AluJo SINE Alu 6 300 -12 246 228 0 0 chr11 73241692 73241746 -77541807 + Alu SINE Alu 78 122 -11 270 269 85 35 chr11 73241892 73242033 -77541520 - MLT1K LTR MaLR -325 263 116 434 276 86 9 chr11 73242880 73242996 -77540557 + MER91C DNA MER1_type 1 125 -15 1239 162 5 18 chr11 73243143 73243365 -77540188 - MER20 DNA MER1_type 0 219 1 1778 168 19 29 chr11 73243755 73244064 -77539489 + AluJo SINE Alu 1 306 -6 2194 126 0 0 chr11 73244068 73244370 -77539183 + AluY SINE Alu 1 302 -9 1723 188 14 3 chr11 73244370 73244657 -77538896 - AluSx SINE Alu -22 290 1 280 255 53 85 chr11 73244668 73244856 -77538697 - L1MC5 LINE L1 -44 7917 7736 461 276 145 0 chr11 73245010 73245162 -77538391 - MER5A DNA MER1_type -1 188 15 546 250 165 18 chr11 73245359 73245424 -77538129 - MLT1D LTR MaLR 0 484 430 2152 133 3 7 chr11 73245424 73245732 -77537821 + AluSq SINE Alu 1 307 -6 546 250 165 18 chr11 73245732 73245907 -77537646 - MLT1D LTR MaLR -54 430 206 1929 92 34 8 chr11 73245941 73246291 -77537262 + LTR7 LTR ERV1 1 448 -2 15365 95 28 16 chr11 73246293 73249126 -77534427 + HERVH LTR ERV1 1 2992 -4721 2054 103 3 12 chr11 73249112 73249417 -77534136 + HERVH LTR ERV1 3140 3441 -4272 60071 67 4 7 chr11 73249417 73257248 -77526305 + HERVE LTR ERV1 3 7812 -1 1546 221 47 44 chr11 73257337 73257745 -77525808 + LTR2 LTR ERV1 41 449 0 3856 86 6 0 chr11 73257745 73258294 -77525259 + HERVH LTR ERV1 3442 3993 -3720 4012 126 2 2 chr11 73258296 73258898 -77524655 + HERVH LTR ERV1 4488 5089 -2624 5608 41 1 3 chr11 73258898 73259581 -77523972 + MER11C LTR ERVK 1 682 -389 1446 158 11 7 chr11 73309627 73309665 -77473888 + MER7A DNA MER2_type 56 92 -2946 2258 95 0 7 chr11 73309665 73309969 -77473584 - AluSx SINE Alu -10 302 1 1446 158 11 7 chr11 73309969 73310208 -77473345 + MER7A DNA MER2_type 92 332 -14 377 136 210 0 chr11 73310211 73310292 -77473261 - MER2 DNA MER2_type -247 98 1 268 152 0 0 chr11 73311126 73311172 -77472381 - L2 LINE L2 -215 3057 3012 228 234 0 0 chr11 73311178 73311225 -77472328 - L2 LINE L2 -547 2767 2721 313 93 0 0 chr11 73311378 73311421 -77472132 + L1MA2 LINE L1 6260 6302 -2 2033 128 10 0 chr11 73311564 73311869 -77471684 - AluSp SINE Alu -5 308 1 216 0 0 0 chr11 73311870 73311894 -77471659 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1857 158 3 0 chr11 73311894 73312179 -77471374 - AluJb SINE Alu -26 286 1 586 163 82 27 chr11 73312534 73312681 -77470872 - L1MB8 LINE L1 0 6178 6024 435 263 72 26 chr11 73312919 73313071 -77470482 - L1MD2 LINE L1 -27 6332 6174 1701 184 10 3 chr11 73313081 73313375 -77470178 - AluJo SINE Alu -14 298 3 293 353 41 8 chr11 73313532 73313654 -77469899 - MIR SINE MIR -88 174 49 24 67 0 0 chr11 73314005 73314050 -77469503 + GC_rich Low_complexity Low_complexity 1 45 0 205 119 45 60 chr11 73314050 73314117 -77469436 + (CGCGG)n Simple_repeat Simple_repeat 5 70 0 23 92 0 0 chr11 73314161 73314226 -77469327 + GC_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr11 73314241 73314269 -77469284 + GC_rich Low_complexity Low_complexity 1 28 0 24 71 0 14 chr11 73314283 73314303 -77469250 + GC_rich Low_complexity Low_complexity 1 20 -49 266 87 22 0 chr11 73314303 73314349 -77469204 + (CTG)n Simple_repeat Simple_repeat 3 49 0 24 71 0 14 chr11 73314349 73314398 -77469155 + GC_rich Low_complexity Low_complexity 20 69 0 22 70 0 0 chr11 73314411 73314454 -77469099 + GC_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr11 73314777 73314799 -77468754 + GC_rich Low_complexity Low_complexity 1 22 0 394 285 33 33 chr11 73316973 73317124 -77466429 + MIR SINE MIR 13 163 -99 1534 225 38 31 chr11 73317496 73317834 -77465719 - L1MB5 LINE L1 0 6174 5831 2238 101 0 0 chr11 73317834 73318131 -77465422 - AluSx SINE Alu -15 297 1 1534 225 38 31 chr11 73318131 73318236 -77465317 - L1MB5 LINE L1 -343 5831 5728 237 182 59 0 chr11 73318775 73318826 -77464727 + MIR SINE MIR 112 164 -55 27 0 0 0 chr11 73319550 73319577 -77463976 + AT_rich Low_complexity Low_complexity 1 27 0 2213 70 30 13 chr11 73319602 73319904 -77463649 - AluY SINE Alu -4 307 1 1841 148 24 0 chr11 73319907 73320198 -77463355 - AluJb SINE Alu -14 298 1 295 294 40 16 chr11 73320392 73320518 -77463035 + MIR3 SINE MIR 64 192 -16 2077 101 37 3 chr11 73320629 73320926 -77462627 - AluSx SINE Alu -5 307 1 861 151 0 20 chr11 73320927 73321073 -77462480 - AluJo SINE Alu -169 143 1 35 0 0 0 chr11 73321073 73321108 -77462445 + AT_rich Low_complexity Low_complexity 1 35 0 607 136 78 0 chr11 73321121 73321224 -77462329 - AluJo SINE Alu -81 231 121 1048 314 128 49 chr11 73321233 73321434 -77462119 - L1MC4a LINE L1 -755 5391 5207 1663 165 0 24 chr11 73321434 73321725 -77461828 + AluJb SINE Alu 1 284 -28 225 65 0 0 chr11 73321725 73321756 -77461797 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1048 314 128 49 chr11 73321756 73322002 -77461551 - L1MC4a LINE L1 -939 5207 4982 2182 109 0 19 chr11 73322002 73322315 -77461238 - AluSx SINE Alu 0 312 6 1048 314 128 49 chr11 73322315 73322976 -77460577 - L1MC4a LINE L1 -1164 4982 4621 2047 125 3 0 chr11 73324671 73324966 -77458587 - AluSx SINE Alu -16 296 1 1768 144 3 39 chr11 73324972 73325278 -77458275 - AluJb SINE Alu -17 295 1 349 369 34 0 chr11 73327311 73327460 -77456093 + MIR SINE MIR 77 230 -32 366 271 105 15 chr11 73329091 73329224 -77454329 + MIR SINE MIR 47 191 -71 661 290 109 0 chr11 73330805 73331026 -77452527 - MIR SINE MIR 0 262 18 227 259 19 0 chr11 73331132 73331186 -77452367 - MIR SINE MIR -56 152 98 202 216 0 0 chr11 73331674 73331711 -77451842 + (TG)n Simple_repeat Simple_repeat 1 37 0 393 263 0 0 chr11 73332586 73332681 -77450872 + MER103 DNA DNA 2 96 -70 273 109 0 0 chr11 73333301 73333347 -77450206 + (TG)n Simple_repeat Simple_repeat 1 46 0 195 100 0 0 chr11 73334336 73334366 -77449187 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 274 317 114 0 chr11 73335261 73335428 -77448125 + L1M4 LINE L1 4405 4590 -1556 2222 106 13 0 chr11 73335509 73335812 -77447741 + AluSx SINE Alu 1 307 -5 308 241 13 0 chr11 73335961 73336040 -77447513 + L1MC4 LINE L1 6460 6539 -1503 1905 127 33 0 chr11 73336146 73336445 -77447108 + AluSx SINE Alu 1 308 0 856 193 25 59 chr11 73336468 73336628 -77446925 + MER82 DNA MER2_type 1 154 -499 1766 174 10 3 chr11 73336628 73336926 -77446627 - AluJb SINE Alu -12 300 1 856 193 25 59 chr11 73336926 73336967 -77446586 + MER82 DNA MER2_type 154 195 -458 859 188 0 13 chr11 73336968 73337122 -77446431 + FRAM SINE Alu 1 152 -24 1582 264 42 9 chr11 73337123 73337573 -77445980 + MER82 DNA MER2_type 185 649 -4 1304 214 23 3 chr11 73337573 73337876 -77445677 + L1MC4 LINE L1 6695 7003 -1039 2131 134 0 0 chr11 73338015 73338321 -77445232 - AluSq SINE Alu -7 306 1 685 155 52 0 chr11 73338333 73338449 -77445104 - L1MB3 LINE L1 -2 6181 6060 219 69 0 0 chr11 73339567 73339596 -77443957 + (TG)n Simple_repeat Simple_repeat 2 30 0 2265 114 0 0 chr11 73340420 73340727 -77442826 - AluSx SINE Alu -5 307 1 1083 124 0 48 chr11 73340727 73340902 -77442651 - AluSg/x SINE Alu -11 301 134 2165 111 0 0 chr11 73340902 73341199 -77442354 - AluSg SINE Alu -13 297 1 964 180 22 27 chr11 73341219 73341486 -77442067 - L1MB5 LINE L1 -349 5825 5562 2290 98 3 0 chr11 73341514 73341821 -77441732 + AluSp SINE Alu 3 310 -3 353 311 30 44 chr11 73341824 73341959 -77441594 - MIR SINE MIR -109 153 21 378 259 50 43 chr11 73342035 73342174 -77441379 - MIR SINE MIR -46 216 77 25 31 0 0 chr11 73342318 73342350 -77441203 + AT_rich Low_complexity Low_complexity 1 32 0 361 339 63 17 chr11 73342629 73342803 -77440750 - L1ME LINE L1 -382 5739 5558 683 150 53 0 chr11 73343668 73343781 -77439772 - FLAM_C SINE Alu -19 124 6 285 278 35 70 chr11 73344711 73344826 -77438727 - L3 LINE CR1 -91 1486 1376 264 77 0 0 chr11 73344926 73344965 -77438588 + (TG)n Simple_repeat Simple_repeat 2 40 0 2238 122 0 0 chr11 73345875 73346186 -77437367 - AluSx SINE Alu -1 311 1 3620 180 17 39 chr11 73346186 73346416 -77437137 - L1MB3 LINE L1 -123 6060 5827 2193 119 0 3 chr11 73346416 73346728 -77436825 - AluSx SINE Alu -1 311 1 3620 180 17 39 chr11 73346728 73346843 -77436710 - L1MB3 LINE L1 -356 5827 5711 2333 91 3 0 chr11 73346843 73347152 -77436401 - AluSx SINE Alu -2 310 1 3620 180 17 39 chr11 73347152 73347777 -77435776 - L1MB3 LINE L1 -472 5711 5107 1933 146 0 10 chr11 73350231 73350526 -77433027 + AluJb SINE Alu 5 296 -16 2360 90 6 0 chr11 73350589 73350900 -77432653 - AluSq SINE Alu 0 313 1 1819 121 0 0 chr11 73351655 73351904 -77431649 - AluSx SINE Alu -63 249 1 212 253 80 0 chr11 73352052 73352127 -77431426 + MIR SINE MIR 30 110 -98 390 267 0 0 chr11 73352452 73352602 -77430951 + (TG)n Simple_repeat Simple_repeat 1 150 0 496 276 102 4 chr11 73353303 73353549 -77430004 - L2 LINE L2 -151 3162 2893 508 341 55 7 chr11 73353576 73353869 -77429684 - L2 LINE L2 -551 2763 2457 225 0 0 0 chr11 73355002 73355027 -77428526 + (GGGAGA)n Simple_repeat Simple_repeat 2 26 0 273 316 66 0 chr11 73356272 73356381 -77427172 + MIR SINE MIR 40 153 -63 2269 66 7 20 chr11 73357408 73357711 -77425842 - AluY SINE Alu -12 299 1 1706 139 51 34 chr11 73357711 73358005 -77425548 - AluJb SINE Alu -13 299 1 2160 173 72 25 chr11 73358016 73358494 -77425059 - L1MC1 LINE L1 0 6333 5826 2239 110 0 0 chr11 73358494 73358803 -77424750 - AluY SINE Alu -2 309 1 2160 173 72 25 chr11 73358803 73358850 -77424703 - L1MC1 LINE L1 -507 5826 5783 391 275 208 6 chr11 73358867 73359045 -77424508 + L1MC4a LINE L1 5690 5903 -1905 394 237 102 73 chr11 73359596 73359674 -77423879 - MER46C DNA MER2_type -154 184 110 2154 105 10 0 chr11 73359674 73359980 -77423573 - AluJb SINE Alu -3 309 1 394 237 102 73 chr11 73359980 73360078 -77423475 - MER46C DNA MER2_type -228 110 3 217 348 36 18 chr11 73360141 73360253 -77423300 + L2 LINE L2 3200 3313 0 262 301 106 0 chr11 73360374 73360487 -77423066 - L2 LINE L2 -5 3267 3143 856 223 83 8 chr11 73360625 73360867 -77422686 - MLT1F1 LTR MaLR 0 567 308 425 243 92 60 chr11 73361179 73361235 -77422318 - MIR SINE MIR -59 203 150 1803 153 0 63 chr11 73361235 73361338 -77422215 - AluJb SINE Alu 0 312 204 180 97 0 0 chr11 73361338 73361369 -77422184 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1990 118 0 7 chr11 73361369 73361656 -77421897 - AluSx SINE Alu -27 285 1 1803 153 0 63 chr11 73361656 73361884 -77421669 - AluJb SINE Alu -106 206 1 425 243 92 60 chr11 73361884 73362012 -77421541 - MIR SINE MIR -112 150 13 2527 62 0 0 chr11 73362284 73362591 -77420962 + AluY SINE Alu 1 307 -4 2487 71 0 0 chr11 73362591 73362902 -77420651 + AluY SINE Alu 1 311 0 2361 81 0 3 chr11 73362922 73363232 -77420321 + AluY SINE Alu 1 309 -2 1116 160 0 0 chr11 73363236 73363411 -77420142 + FRAM SINE Alu 1 168 -8 2198 215 53 22 chr11 73363411 73363968 -77419585 + L1MB5 LINE L1 5564 6141 -33 2016 131 0 26 chr11 73363968 73364280 -77419273 + AluSx SINE Alu 1 304 -8 2198 215 53 22 chr11 73364280 73364307 -77419246 + L1MB5 LINE L1 6141 6166 -8 2219 107 0 0 chr11 73364942 73365241 -77418312 + AluSx SINE Alu 1 299 -13 229 153 36 36 chr11 73365525 73365636 -77417917 + G-rich Low_complexity Low_complexity 2 112 0 343 293 73 0 chr11 73365844 73365926 -77417627 - L1MC4 LINE L1 -1340 6702 6615 384 22 0 0 chr11 73365926 73365971 -77417582 + (TG)n Simple_repeat Simple_repeat 2 46 0 765 188 0 16 chr11 73365971 73366099 -77417454 - AluJb SINE Alu -186 126 1 187 114 45 0 chr11 73367290 73367334 -77416219 + (CGGGG)n Simple_repeat Simple_repeat 2 47 0 477 200 0 0 chr11 73367403 73367488 -77416065 + FRAM/FAM SINE Alu 3 87 -98 213 244 0 0 chr11 73368415 73368456 -77415097 + (TTCA)n Simple_repeat Simple_repeat 2 42 0 348 304 78 9 chr11 73368456 73368571 -77414982 - L2 LINE L2 0 3313 3191 2212 113 0 3 chr11 73369362 73369663 -77413890 + AluSx SINE Alu 1 300 -12 255 172 17 29 chr11 73369950 73370029 -77413524 - L2 LINE L2 -330 2983 2908 336 200 6 26 chr11 73370080 73370170 -77413383 + MER45 DNA AcHobo 86 1579 -2 2020 130 38 0 chr11 73370425 73370717 -77412836 - AluSx SINE Alu -9 303 1 1039 80 15 7 chr11 73371127 73371264 -77412289 + AluSx SINE Alu 58 195 -117 389 267 0 0 chr11 73374375 73374465 -77409088 + MIR SINE MIR 84 173 -89 222 279 16 85 chr11 73374735 73374864 -77408689 + MER5A DNA MER1_type 26 145 -44 905 253 25 7 chr11 73376337 73376614 -77406939 - L1ME2 LINE L1 0 6164 5883 2206 105 0 10 chr11 73377988 73378302 -77405251 - AluY SINE Alu 0 311 1 741 87 106 0 chr11 73378822 73378926 -77404627 + AluSq/x SINE Alu 6 120 -192 621 315 67 65 chr11 73380380 73380549 -77403004 - L1ME4a LINE L1 0 6121 5954 2098 109 6 31 chr11 73380549 73380869 -77402684 + AluSx SINE Alu 1 312 0 621 315 67 65 chr11 73380869 73381102 -77402451 - L1ME4a LINE L1 -167 5954 5718 436 184 0 95 chr11 73381472 73381619 -77401934 - L1MC2 LINE L1 0 6344 6212 2283 75 0 3 chr11 73381643 73381936 -77401617 + AluSq SINE Alu 1 292 -21 939 274 66 0 chr11 73381967 73382270 -77401283 + MER58B DNA MER1_type 19 341 0 232 245 0 0 chr11 73382297 73382350 -77401203 - L1ME4a LINE L1 -101 6020 5968 974 274 41 32 chr11 73382691 73383132 -77400421 + MLT1C LTR MaLR 9 453 -14 255 374 7 20 chr11 73384305 73384452 -77399101 + L2 LINE L2 3168 3312 -1 288 261 78 17 chr11 73384537 73384652 -77398901 + MIR SINE MIR 64 185 -77 2222 102 0 0 chr11 73384675 73384970 -77398583 - AluSx SINE Alu -17 295 1 301 324 29 0 chr11 73385279 73385384 -77398169 - MIR3 SINE MIR -20 188 81 490 264 69 36 chr11 73387760 73387952 -77395601 + MIR SINE MIR 6 204 -58 591 248 38 0 chr11 73388600 73388757 -77394796 - MER5A DNA MER1_type -22 167 5 284 325 24 0 chr11 73388762 73388845 -77394708 + MIR3 SINE MIR 88 172 -36 2268 112 0 0 chr11 73388902 73389207 -77394346 - AluSx SINE Alu -7 305 1 444 269 168 0 chr11 73389209 73389376 -77394177 - MIR SINE MIR -35 227 33 208 182 34 0 chr11 73389648 73389707 -77393846 - MIR SINE MIR -79 129 68 369 246 45 9 chr11 73390076 73390186 -77393367 + MIR3 SINE MIR 88 201 -7 185 332 84 21 chr11 73390331 73390521 -77393032 - L3 LINE CR1 -220 1357 1156 450 154 13 0 chr11 73392110 73392188 -77391365 + FLAM_A SINE Alu 18 96 -46 281 260 14 0 chr11 73392188 73392271 -77391282 + L1MC4a LINE L1 7738 7808 0 2077 100 26 19 chr11 73392796 73393106 -77390447 - AluSq SINE Alu -1 312 1 1761 152 3 27 chr11 73393689 73393985 -77389568 - AluJb SINE Alu -23 289 1 2791 200 30 82 chr11 73393995 73394058 -77389495 - L1MB5 LINE L1 -8 6166 6101 2365 115 0 0 chr11 73394058 73394363 -77389190 + AluSx SINE Alu 1 305 -7 2791 200 30 82 chr11 73394363 73394681 -77388872 - L1MB5 LINE L1 -73 6101 5768 1806 157 10 20 chr11 73394681 73394987 -77388566 + AluJo SINE Alu 1 303 -9 2791 200 30 82 chr11 73394987 73395335 -77388218 - L1MB5 LINE L1 -406 5768 5481 2476 89 0 0 chr11 73395335 73395648 -77387905 + AluSq SINE Alu 1 313 0 2791 200 30 82 chr11 73395648 73395741 -77387812 - L1MB5 LINE L1 -693 5481 5385 194 243 43 71 chr11 73395917 73395987 -77387566 - MIR3 SINE MIR -48 160 93 2477 64 3 0 chr11 73396305 73396600 -77386953 - AluY SINE Alu -15 296 1 2445 107 0 0 chr11 73396855 73397163 -77386390 + AluSx SINE Alu 1 308 -4 226 264 58 11 chr11 73397369 73397456 -77386097 + MER103 DNA DNA 53 143 -23 254 236 0 0 chr11 73399060 73399115 -77384438 + (CCCTG)n Simple_repeat Simple_repeat 1 55 0 192 152 0 0 chr11 73399478 73399511 -77384042 + (CAT)n Simple_repeat Simple_repeat 1 33 0 525 44 0 0 chr11 73399797 73399865 -77383688 + (TG)n Simple_repeat Simple_repeat 1 68 0 632 175 37 10 chr11 73400397 73400596 -77382957 + MER58B DNA MER1_type 1 179 -162 1605 141 78 7 chr11 73400596 73400865 -77382688 - AluJb SINE Alu -24 288 1 479 172 45 119 chr11 73400884 73401018 -77382535 + AluJo SINE Alu 127 250 -62 1146 179 5 36 chr11 73401018 73401242 -77382311 + AluJo SINE Alu 85 301 -11 441 153 274 8 chr11 73401246 73401370 -77382183 + MER58B DNA MER1_type 185 341 0 2149 95 57 3 chr11 73402286 73402409 -77381144 + AluSp SINE Alu 1 116 -197 261 0 0 0 chr11 73402409 73402438 -77381115 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2149 95 57 3 chr11 73402438 73402610 -77380943 + AluSp SINE Alu 116 312 -1 726 158 7 43 chr11 73402622 73402761 -77380792 + AluSq/x SINE Alu 2 135 -177 226 295 9 38 chr11 73403250 73403355 -77380198 - MER5B DNA MER1_type -19 159 58 320 265 23 45 chr11 73403396 73403528 -77380025 - MIR3 SINE MIR -50 158 30 2012 134 0 20 chr11 73403549 73403847 -77379706 - AluSx SINE Alu -20 292 1 2290 84 3 0 chr11 73404816 73405101 -77378452 + AluSx SINE Alu 1 286 -26 275 0 29 0 chr11 73405104 73405139 -77378414 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 215 233 0 0 chr11 73405775 73405818 -77377735 - MIR SINE MIR -3 259 217 2809 25 0 25 chr11 73406537 73406862 -77376691 + AluYb8 SINE Alu 1 317 -1 1080 142 18 6 chr11 73406862 73407031 -77376522 + AluSg/x SINE Alu 132 302 -8 1753 181 3 13 chr11 73407038 73407342 -77376211 + AluJb SINE Alu 2 302 -10 354 345 78 24 chr11 73407806 73408012 -77375541 + MIR SINE MIR 21 237 -25 2214 96 4 11 chr11 73409023 73409304 -77374249 - AluSx SINE Alu -14 298 20 2517 85 0 0 chr11 73409489 73409796 -77373757 - AluSq SINE Alu -6 307 1 1277 138 5 0 chr11 73409809 73409998 -77373555 + AluSc SINE Alu 119 308 -1 1850 114 0 0 chr11 73410150 73410387 -77373166 - AluSq SINE Alu -76 237 1 376 219 29 0 chr11 73410451 73410556 -77372997 - MIR SINE MIR -122 140 33 208 154 26 0 chr11 73410828 73410867 -77372686 - MIR SINE MIR -79 129 90 369 246 45 9 chr11 73411256 73411366 -77372187 + MIR3 SINE MIR 88 201 -7 185 332 84 21 chr11 73411511 73411701 -77371852 - L3 LINE CR1 -220 1357 1156 285 133 11 72 chr11 73413319 73413407 -77370146 + AluJ/FLAM SINE Alu 36 97 -205 281 260 14 0 chr11 73413407 73413490 -77370063 + L1MC4a LINE L1 7738 7808 0 2077 100 26 19 chr11 73413963 73414273 -77369280 - AluSq SINE Alu -1 312 1 1761 152 3 27 chr11 73414856 73415152 -77368401 - AluJb SINE Alu -23 289 1 2234 224 18 70 chr11 73415162 73415225 -77368328 - L1MB5 LINE L1 -8 6166 6101 2365 115 0 0 chr11 73415225 73415530 -77368023 + AluSx SINE Alu 1 305 -7 2234 224 18 70 chr11 73415530 73415848 -77367705 - L1MB5 LINE L1 -73 6101 5837 1811 157 10 20 chr11 73415848 73416154 -77367399 + AluJo SINE Alu 1 303 -9 2234 224 18 70 chr11 73416154 73416484 -77367069 - L1MB5 LINE L1 -337 5837 5491 2312 89 0 22 chr11 73416504 73416818 -77366735 + AluY SINE Alu 1 307 -4 27 0 0 0 chr11 73416844 73416871 -77366682 + AT_rich Low_complexity Low_complexity 1 27 0 229 182 59 0 chr11 73417595 73417646 -77365907 - MIR SINE MIR -55 153 112 1610 225 38 31 chr11 73418185 73418290 -77365263 + L1MB5 LINE L1 5728 5831 -343 2348 101 0 0 chr11 73418290 73418587 -77364966 + AluSx SINE Alu 1 297 -15 1610 225 38 31 chr11 73418587 73418925 -77364628 + L1MB5 LINE L1 5831 6174 0 347 274 26 17 chr11 73419297 73419414 -77364139 - MIR SINE MIR -99 163 46 21 36 0 0 chr11 73421971 73421999 -77361554 + AT_rich Low_complexity Low_complexity 1 28 0 2391 87 3 3 chr11 73422213 73422513 -77361040 + AluSx SINE Alu 1 300 -12 622 149 19 9 chr11 73422519 73422626 -77360927 - FLAM_A SINE Alu -34 108 1 30 45 0 0 chr11 73424335 73424379 -77359174 + AT_rich Low_complexity Low_complexity 1 44 0 1874 175 0 10 chr11 73424441 73424750 -77358803 - AluJo SINE Alu -6 306 1 386 267 23 43 chr11 73424751 73424882 -77358671 - L1MC/D LINE L1 -527 5594 5475 1840 109 54 22 chr11 73424882 73425158 -77358395 + AluSc SINE Alu 1 285 -24 386 267 23 43 chr11 73425158 73425219 -77358334 - L1MC/D LINE L1 -646 5475 5414 2350 102 0 16 chr11 73425315 73425629 -77357924 - AluSx SINE Alu -3 309 1 246 322 161 0 chr11 73425834 73425952 -77357601 + L2 LINE L2 3136 3272 0 330 319 44 9 chr11 73426120 73426233 -77357320 - MIR SINE MIR -57 205 89 646 220 33 13 chr11 73426358 73426508 -77357045 - L2 LINE L2 0 3313 3161 906 248 61 16 chr11 73426511 73426757 -77356796 - MIR SINE MIR -5 257 1 233 304 123 14 chr11 73428893 73429031 -77354522 + L2 LINE L2 3160 3312 -1 891 191 156 25 chr11 73429128 73429221 -77354332 - MER33 DNA MER1_type -2274 311 231 2023 103 18 28 chr11 73429221 73429525 -77354028 - AluSc SINE Alu 0 301 1 891 191 156 25 chr11 73429525 73429714 -77353839 - MER33 DNA MER1_type -2354 231 1 2265 106 0 0 chr11 73430047 73430329 -77353224 - AluSx SINE Alu -26 286 5 189 147 0 0 chr11 73430360 73430394 -77353159 + (TA)n Simple_repeat Simple_repeat 2 35 0 1254 169 36 5 chr11 73431013 73431232 -77352321 + AluJo SINE Alu 85 310 -2 832 212 76 0 chr11 73431267 73431451 -77352102 - MER46A DNA MER2_type -38 198 1 1715 168 0 50 chr11 73431515 73431836 -77351717 - AluJo SINE Alu -7 305 1 21 0 0 0 chr11 73432446 73432467 -77351086 + AT_rich Low_complexity Low_complexity 1 21 0 2301 92 34 0 chr11 73432904 73433197 -77350356 - AluSx SINE Alu -9 303 1 27 49 0 0 chr11 73433429 73433470 -77350083 + AT_rich Low_complexity Low_complexity 1 41 0 1978 128 16 32 chr11 73433496 73433808 -77349745 + AluSc SINE Alu 1 307 -2 337 336 23 8 chr11 73435914 73436042 -77347511 - MIR3 SINE MIR -43 165 36 204 359 0 0 chr11 73436611 73436675 -77346878 + GA-rich Low_complexity Low_complexity 2 65 0 215 132 0 26 chr11 73437107 73437145 -77346408 + MIR SINE MIR 147 183 -79 2420 101 0 0 chr11 73438057 73438363 -77345190 - AluSg SINE Alu -2 308 3 416 188 214 0 chr11 73439304 73439421 -77344132 + MER5A DNA MER1_type 48 189 0 872 207 0 0 chr11 73439458 73439608 -77343945 - FRAM SINE Alu -19 157 8 2569 63 3 0 chr11 73439728 73440029 -77343524 - AluSp SINE Alu -11 302 1 195 42 0 0 chr11 73440310 73440334 -77343219 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2233 105 0 3 chr11 73440358 73440652 -77342901 - AluSx SINE Alu -19 293 1 517 149 23 0 chr11 73440657 73440744 -77342809 - AluSg/x SINE Alu -14 295 207 2094 119 7 0 chr11 73440659 73440953 -77342600 - AluSx SINE Alu -16 296 1 2119 129 0 3 chr11 73441082 73441385 -77342168 + AluSx SINE Alu 1 302 -10 2232 81 3 10 chr11 73442205 73442500 -77341053 - AluSq SINE Alu -19 294 2 316 260 87 19 chr11 73443396 73443500 -77340053 - MIR SINE MIR -93 169 59 271 122 0 6 chr11 73443950 73443994 -77339559 - L1MB8 LINE L1 -5 6173 6133 1950 141 0 3 chr11 73443994 73444291 -77339262 - AluJo SINE Alu -16 296 1 2120 201 108 2 chr11 73444295 73444816 -77338737 - L1M4 LINE L1 -3113 3033 2458 2443 74 0 0 chr11 73445008 73445317 -77338236 - AluY SINE Alu -2 309 1 1427 183 0 51 chr11 73445339 73445650 -77337903 - AluJb SINE Alu -15 297 3 21 0 0 0 chr11 73446611 73446632 -77336921 + AT_rich Low_complexity Low_complexity 1 21 0 551 157 0 113 chr11 73447248 73447363 -77336190 + Tigger3b DNA MER2_type 1 102 -1129 * 4713 134 58 42 chr11 73447361 73447695 -77335858 + Tigger3b DNA MER2_type 274 601 -2427 1467 158 79 11 chr11 73447695 73447974 -77335579 + AluJo SINE Alu 1 298 -14 1664 169 23 0 chr11 73447984 73448167 -77335386 - AluJo SINE Alu -4 308 114 315 0 0 0 chr11 73448167 73448202 -77335351 + (TG)n Simple_repeat Simple_repeat 2 36 0 1664 169 23 0 chr11 73448202 73448319 -77335234 - AluJo SINE Alu -198 114 1 4713 134 58 42 chr11 73448319 73448338 -77335215 + Tigger3b DNA MER2_type 609 626 -2402 1971 125 0 0 chr11 73448338 73448618 -77334935 - AluSx SINE Alu -23 289 10 4713 134 58 42 chr11 73448618 73449172 -77334381 + Tigger3b DNA MER2_type 626 1207 -24 469 206 0 52 chr11 73449183 73449280 -77334273 + Tigger3b DNA MER2_type 1149 1240 -1 405 235 102 0 chr11 73449375 73449473 -77334080 + L2 LINE L2 3191 3298 -15 288 279 157 7 chr11 73450113 73450253 -77333300 - MIR3 SINE MIR -7 201 41 890 191 6 0 chr11 73450794 73450956 -77332597 - FRAM SINE Alu -12 164 2 2047 119 0 7 chr11 73451183 73451486 -77332067 - AluSx SINE Alu -11 301 1 1202 205 60 21 chr11 73451888 73452171 -77331382 + AluJo SINE Alu 1 294 -18 21 36 0 0 chr11 73452182 73452210 -77331343 + AT_rich Low_complexity Low_complexity 1 28 0 503 236 19 70 chr11 73452265 73452422 -77331131 + MIR SINE MIR 58 206 -56 1872 139 0 0 chr11 73452868 73453148 -77330405 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr11 73453148 73453169 -77330384 + (TAAAA)n Simple_repeat Simple_repeat 1 21 0 232 235 118 96 chr11 73453202 73453338 -77330215 + L2 LINE L2 2937 3075 -197 2138 99 0 13 chr11 73453964 73454266 -77329287 - AluSc SINE Alu -11 298 1 436 211 49 73 chr11 73454266 73454389 -77329164 + MER5A DNA MER1_type 65 184 -5 1804 116 14 14 chr11 73455122 73455406 -77328147 + AluSx SINE Alu 28 311 -1 504 0 0 0 chr11 73455431 73455487 -77328066 + (CAAGA)n Simple_repeat Simple_repeat 2 57 0 2212 92 0 0 chr11 73455723 73456017 -77327536 - AluY SINE Alu -17 294 1 468 256 29 58 chr11 73456136 73456273 -77327280 - L2 LINE L2 -23 3290 3158 1241 232 115 124 chr11 73456442 73457287 -77326266 - L2 LINE L2 -423 2891 2055 1583 133 77 35 chr11 73458786 73459072 -77324481 + AluJb SINE Alu 1 298 -14 2294 93 0 0 chr11 73459536 73459837 -77323716 - AluSg SINE Alu -9 301 1 747 161 44 7 chr11 73459837 73459974 -77323579 - L1M3 LINE L1 -441 5739 5598 2220 86 0 0 chr11 73459974 73460264 -77323289 - AluSg SINE Alu -20 290 1 1265 182 133 62 chr11 73461217 73461602 -77321951 + MLT1D LTR MaLR 1 303 -62 2155 102 10 3 chr11 73461602 73461907 -77321646 - AluSq SINE Alu -6 307 1 1265 182 133 62 chr11 73461907 73461967 -77321586 + MLT1D LTR MaLR 303 357 -8 970 179 0 48 chr11 73462101 73462330 -77321223 + AluJo SINE Alu 87 304 -8 2235 90 0 0 chr11 73462611 73462910 -77320643 - AluY SINE Alu -12 299 1 262 309 64 27 chr11 73463492 73463602 -77319951 + MIR SINE MIR 9 122 -140 2067 48 104 0 chr11 73463951 73464220 -77319333 + AluY SINE Alu 1 297 -14 192 191 71 0 chr11 73464385 73464427 -77319126 - MIR SINE MIR -108 154 110 2172 110 0 0 chr11 73464501 73464801 -77318752 + AluSg SINE Alu 1 300 -10 1231 168 3 44 chr11 73466704 73467025 -77316528 + AluSg SINE Alu 1 308 -2 2007 116 3 0 chr11 73467051 73467343 -77316210 - AluSg SINE Alu -17 293 1 2206 85 0 20 chr11 73467373 73467679 -77315874 + AluSg SINE Alu 1 300 -10 214 269 174 36 chr11 73467713 73467880 -77315673 - L2 LINE L2 -77 3236 3047 757 247 17 6 chr11 73467897 73468075 -77315478 + AluJb SINE Alu 123 302 -10 230 213 67 40 chr11 73468451 73468526 -77315027 - L2 LINE L2 0 3272 3196 241 325 86 0 chr11 73468844 73468961 -77314592 - MIR SINE MIR -85 177 51 1995 83 72 0 chr11 73469061 73469351 -77314202 - AluY SINE Alu 0 311 1 26 0 0 0 chr11 73473350 73473376 -77310177 + GC_rich Low_complexity Low_complexity 1 26 0 214 315 81 0 chr11 73473623 73473734 -77309819 - MIR SINE MIR -82 180 61 2026 120 20 0 chr11 73476036 73476337 -77307216 + AluSx SINE Alu 1 307 -5 370 314 8 17 chr11 73476409 73476527 -77307026 + MIR SINE MIR 26 142 -120 328 263 179 51 chr11 73476531 73476805 -77306748 + L2 LINE L2 2175 2483 -831 2238 109 0 0 chr11 73476808 73477121 -77306432 - AluSq SINE Alu 0 313 1 371 315 24 36 chr11 73477159 73477324 -77306229 + L2 LINE L2 3117 3279 -34 27 29 0 0 chr11 73477750 73477784 -77305769 + AT_rich Low_complexity Low_complexity 1 34 0 2206 118 0 6 chr11 73477786 73478100 -77305453 + AluSx SINE Alu 1 312 0 447 259 36 42 chr11 73478124 73478290 -77305263 - L1MC4 LINE L1 -638 7404 7240 1004 156 0 15 chr11 73478290 73478596 -77304957 + (TA)n Simple_repeat Simple_repeat 1 301 0 215 225 14 0 chr11 73478670 73478741 -77304812 + CT-rich Low_complexity Low_complexity 2 73 0 1378 246 44 35 chr11 73478746 73479156 -77304397 + L1ME2 LINE L1 5696 6112 -52 1611 142 3 62 chr11 73479156 73479326 -77304227 - AluJb SINE Alu -9 303 157 2138 115 0 0 chr11 73479326 73479622 -77303931 - AluSx SINE Alu -15 297 2 1611 142 3 62 chr11 73479622 73479760 -77303793 - AluJb SINE Alu -155 157 13 1378 246 44 35 chr11 73479760 73479804 -77303749 + L1ME2 LINE L1 6112 6154 -10 1811 133 11 0 chr11 73480058 73480185 -77303368 + AluSx SINE Alu 1 125 -179 441 0 0 0 chr11 73480185 73480234 -77303319 + (CA)n Simple_repeat Simple_repeat 2 50 0 1811 133 11 0 chr11 73480234 73480407 -77303146 + AluSx SINE Alu 125 304 0 1044 153 25 20 chr11 73480881 73481077 -77302476 + MLT2B2 LTR ERVL 1 197 -318 348 129 0 71 chr11 73481065 73481135 -77302418 - MLT1A2 LTR MaLR -309 65 1 * 2012 85 29 39 chr11 73481316 73481623 -77301930 + AluY SINE Alu 1 304 -7 2330 88 0 0 chr11 73481910 73482215 -77301338 + AluSp SINE Alu 1 305 -8 2168 196 27 19 chr11 73482229 73482668 -77300885 + L1MB3 LINE L1 5689 6134 -49 2115 119 0 7 chr11 73482668 73482971 -77300582 + AluSx SINE Alu 1 301 -11 2168 196 27 19 chr11 73482971 73483015 -77300538 + L1MB3 LINE L1 6134 6176 -7 369 166 139 0 chr11 73483089 73483181 -77300372 - MIR SINE MIR -68 140 61 628 146 0 27 chr11 73483349 73483459 -77300094 - AluSx SINE Alu -8 301 195 973 111 0 0 chr11 73483459 73483594 -77299959 - AluSx SINE Alu -177 135 1 941 271 72 7 chr11 73483954 73484246 -77299307 - LTR16C LTR ERVL 0 491 181 546 206 56 8 chr11 73484392 73484518 -77299035 - HsTC2 DNA Tc2 -248 1650 1519 705 235 122 17 chr11 73484522 73484864 -77298689 - LTR16A LTR ERVL 0 450 18 502 262 163 21 chr11 73485017 73485250 -77298303 + LTR16C LTR ERVL 224 489 -2 268 255 176 13 chr11 73485428 73485581 -77297972 - L2 LINE L2 -1866 1448 1271 617 318 90 42 chr11 73485896 73486032 -77297521 - L2 LINE L2 -33 3280 3152 2269 107 0 0 chr11 73486032 73486340 -77297213 + AluSx SINE Alu 1 308 -4 617 318 90 42 chr11 73486340 73486722 -77296831 - L2 LINE L2 -161 3152 2742 308 263 40 0 chr11 73486749 73486848 -77296705 - L1MC4 LINE L1 -1 8041 7939 2392 189 22 91 chr11 73486873 73487013 -77296540 + MER82 DNA MER2_type 62 210 -443 2488 33 0 3 chr11 73487013 73487312 -77296241 + AluY SINE Alu 1 298 -13 2019 132 3 0 chr11 73487321 73487625 -77295928 - AluSx SINE Alu -7 305 1 2392 189 22 91 chr11 73487625 73488103 -77295450 + MER82 DNA MER2_type 218 647 -6 422 280 40 13 chr11 73488105 73488255 -77295298 - L1MC4 LINE L1 -148 7894 7741 608 203 292 0 chr11 73488272 73488464 -77295089 - L1MC4 LINE L1 -369 7673 7426 * 3242 143 8 93 chr11 73488462 73488669 -77294884 - L1M4c LINE L1 -4014 2370 2147 2845 87 0 13 chr11 73488669 73489049 -77294504 - THE1C LTR MaLR 0 375 1 3242 143 8 93 chr11 73489049 73489350 -77294203 - L1M4c LINE L1 -4237 2147 1943 2077 104 0 14 chr11 73489350 73489667 -77293886 - AluSq SINE Alu 0 313 1 3242 143 8 93 chr11 73489667 73489910 -77293643 - L1M4c LINE L1 -4441 1943 1681 1667 183 26 7 chr11 73489920 73490226 -77293327 - AluJb SINE Alu 0 312 1 1547 167 14 31 chr11 73490278 73490571 -77292982 + AluJb SINE Alu 1 288 -24 7934 128 23 102 chr11 73490992 73491058 -77292495 - L1M4c LINE L1 -4730 1654 1584 2242 115 7 0 chr11 73491058 73491363 -77292190 - AluSc SINE Alu -2 307 1 7934 128 23 102 chr11 73491363 73491397 -77292156 - L1M4c LINE L1 -4800 1584 1549 2153 96 0 0 chr11 73491397 73491668 -77291885 + AluY SINE Alu 39 309 -2 7934 128 23 102 chr11 73491668 73491804 -77291749 - L1M4c LINE L1 -4835 1549 1404 2240 106 3 0 chr11 73491804 73492119 -77291434 - AluSp SINE Alu 0 316 1 7934 128 23 102 chr11 73492119 73492188 -77291365 - L1M4c LINE L1 -4980 1404 1331 2127 123 0 0 chr11 73492188 73492495 -77291058 - AluSx SINE Alu 0 307 1 7934 128 23 102 chr11 73492495 73492507 -77291046 - L1M4c LINE L1 -5053 1331 1320 1667 165 0 16 chr11 73492507 73492762 -77290791 - AluJo SINE Alu -25 287 37 7934 128 23 102 chr11 73492762 73492777 -77290776 - L1M4c LINE L1 -5064 1320 1305 189 0 0 0 chr11 73492777 73492798 -77290755 + (TC)n Simple_repeat Simple_repeat 2 22 0 1592 169 56 15 chr11 73492798 73492954 -77290599 - AluJo SINE Alu -27 285 112 360 43 0 0 chr11 73492954 73493000 -77290553 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 1592 169 56 15 chr11 73493000 73493109 -77290444 - AluJo SINE Alu -200 112 9 7934 128 23 102 chr11 73493109 73493976 -77289577 - L1M4c LINE L1 -5078 1306 372 2367 84 0 16 chr11 73493976 73494284 -77289269 + AluSc SINE Alu 1 303 -6 7934 128 23 102 chr11 73494284 73494478 -77289075 - L1M4c LINE L1 -6012 372 418 2358 98 0 0 chr11 73494478 73494774 -77288779 + AluSx SINE Alu 1 296 -16 7934 128 23 102 chr11 73494774 73495147 -77288406 - L1M4c LINE L1 -5965 419 18 827 229 74 63 chr11 73495150 73495324 -77288229 - L1M4 LINE L1 -904 5242 5071 1659 115 5 0 chr11 73495324 73495542 -77288011 - AluSx SINE Alu -93 219 1 827 229 74 63 chr11 73495542 73495705 -77287848 - L1M4 LINE L1 -1075 5071 4898 2137 77 21 98 chr11 73495705 73496043 -77287510 - AluYb8 SINE Alu -4 314 3 827 229 74 63 chr11 73496043 73496070 -77287483 - L1M4 LINE L1 -1248 4898 4873 1104 208 21 45 chr11 73496080 73496262 -77287291 - L1M4 LINE L1 -1408 4738 4553 2505 58 14 0 chr11 73496262 73496555 -77286998 - AluY SINE Alu -14 297 1 1104 208 21 45 chr11 73496555 73496575 -77286978 - L1M4 LINE L1 -1593 4553 4534 387 0 0 0 chr11 73496575 73496618 -77286935 + (TG)n Simple_repeat Simple_repeat 2 44 0 1104 208 21 45 chr11 73496618 73496750 -77286803 - L1M4 LINE L1 -1612 4534 4411 2936 224 43 54 chr11 73496801 73497579 -77285974 + L1MEc LINE L1 164 930 -5466 2463 76 7 0 chr11 73497579 73497870 -77285683 + AluSc SINE Alu 1 293 -16 2936 224 43 54 chr11 73497870 73498048 -77285505 + L1MEc LINE L1 930 1109 -5287 2513 72 0 13 chr11 73498048 73498353 -77285200 + AluY SINE Alu 1 301 -10 779 218 39 70 chr11 73498383 73498549 -77285004 + L1MEc LINE L1 1706 1861 -4535 3233 159 38 23 chr11 73498549 73499083 -77284470 - L1MA7 LINE L1 -10 6281 5734 2150 142 3 3 chr11 73499083 73499394 -77284159 - AluSx SINE Alu -1 311 1 3233 159 38 23 chr11 73499394 73499512 -77284041 - L1MA7 LINE L1 -557 5734 5619 779 218 39 70 chr11 73499512 73499629 -77283924 + L1MEc LINE L1 1861 1980 -4416 1838 150 11 0 chr11 73499629 73499902 -77283651 - AluJo SINE Alu -16 296 21 1929 149 162 11 chr11 73499905 73500275 -77283278 - MSTA LTR MaLR -2 426 1 1307 186 30 48 chr11 73500299 73500479 -77283074 + L1MEc LINE L1 1972 2154 -4242 1911 164 30 0 chr11 73500479 73500777 -77282776 + AluJb SINE Alu 1 307 -5 1307 186 30 48 chr11 73500777 73500989 -77282564 + L1MEc LINE L1 2154 2357 -4039 2203 136 0 0 chr11 73500991 73501292 -77282261 - AluSx SINE Alu -11 301 1 721 200 0 36 chr11 73501297 73501437 -77282116 - FLAM_C SINE Alu -7 136 2 1181 249 14 0 chr11 73501439 73501792 -77281761 + L1MEc LINE L1 2305 2662 -3553 220 167 95 12 chr11 73501795 73501879 -77281674 + (TTAA)n Simple_repeat Simple_repeat 1 91 0 2043 129 20 14 chr11 73501885 73502179 -77281374 + AluSx SINE Alu 1 296 -16 1936 249 92 13 chr11 73502191 73502886 -77280667 + L1MEc LINE L1 3283 4032 -2183 816 106 0 92 chr11 73502886 73503028 -77280525 + FLAM_C SINE Alu 1 129 -4 256 135 81 0 chr11 73503030 73503104 -77280449 + (TTAA)n Simple_repeat Simple_repeat 4 83 0 2252 99 0 24 chr11 73503112 73503406 -77280147 - AluSx SINE Alu -25 287 1 1396 214 10 51 chr11 73503409 73503722 -77279831 - AluJo SINE Alu -12 300 1 1864 107 17 114 chr11 73503729 73503966 -77279587 - Tigger3b DNA MER2_type -2454 574 316 2165 144 24 27 chr11 73503966 73504342 -77279211 + THE1C LTR MaLR 1 375 0 294 29 0 0 chr11 73504346 73504381 -77279172 + (TA)n Simple_repeat Simple_repeat 1 35 0 1864 107 17 114 chr11 73504381 73504421 -77279132 - Tigger3b DNA MER2_type -2715 313 271 261 0 0 0 chr11 73504421 73504450 -77279103 + (CA)n Simple_repeat Simple_repeat 2 30 0 1864 107 17 114 chr11 73504450 73504579 -77278974 - Tigger3b DNA MER2_type -2757 271 202 1096 178 25 83 chr11 73504579 73504821 -77278732 - AluJo SINE Alu -17 295 68 2119 311 61 17 chr11 73504833 73505105 -77278448 + L1M4c LINE L1 1603 1862 -4522 1494 96 0 0 chr11 73505105 73505292 -77278261 - AluSg/x SINE Alu 0 312 126 2119 311 61 17 chr11 73505292 73505392 -77278161 + L1M4c LINE L1 1862 1956 -4428 2404 97 0 0 chr11 73505392 73505691 -77277862 + AluY SINE Alu 13 311 0 2119 311 61 17 chr11 73505691 73506139 -77277414 + L1M4c LINE L1 1956 2460 -3924 1644 86 41 0 chr11 73506139 73506360 -77277193 + MER30 DNA MER1_type 1 230 0 1884 144 52 0 chr11 73506373 73506664 -77276889 - AluSx SINE Alu -6 306 1 1865 228 43 44 chr11 73506733 73507093 -77276460 + L1M4c LINE L1 2470 2829 -3553 2245 124 0 0 chr11 73507093 73507384 -77276169 + AluSx SINE Alu 1 291 -21 2223 102 41 0 chr11 73507384 73507676 -77275877 + AluSg SINE Alu 1 305 -5 1865 228 43 44 chr11 73507676 73507943 -77275610 + L1M4c LINE L1 2828 3100 -3282 1937 134 22 7 chr11 73507943 73508243 -77275310 - AluSq SINE Alu 0 308 5 1865 228 43 44 chr11 73508243 73508291 -77275262 + L1M4c LINE L1 3100 3147 -3235 2007 129 36 22 chr11 73508305 73508661 -77274892 + THE1C LTR MaLR 10 370 -5 850 228 17 4 chr11 73508663 73508938 -77274615 + L1M4c LINE L1 3139 3423 -2959 518 140 0 40 chr11 73508948 73509006 -77274547 + HY3 scRNA scRNA 1 55 -46 2527 87 3 0 chr11 73509006 73509317 -77274236 - AluSp SINE Alu -1 312 1 518 140 0 40 chr11 73509317 73509358 -77274195 + HY3 scRNA scRNA 55 96 -5 318 160 8 34 chr11 73509417 73509536 -77274017 + (TAGA)n Simple_repeat Simple_repeat 2 117 0 2435 194 40 17 chr11 73509536 73509893 -77273660 - MLT2B3 LTR ERVL -20 534 160 2647 91 13 13 chr11 73509893 73510268 -77273285 + THE1C LTR MaLR 1 375 0 2435 194 40 17 chr11 73510268 73510430 -77273123 - MLT2B3 LTR ERVL -394 160 3 312 180 0 0 chr11 73510452 73510502 -77273051 + L1M4c LINE L1 3448 3497 -2885 1326 155 58 25 chr11 73510527 73510804 -77272749 + L1MB4 LINE L1 5894 6179 -1 1785 180 45 56 chr11 73510807 73511168 -77272385 + MLT1E LTR MaLR 153 531 -62 2186 113 0 7 chr11 73511168 73511469 -77272084 - AluY SINE Alu -12 299 1 1785 180 45 56 chr11 73511469 73511532 -77272021 + MLT1E LTR MaLR 531 593 0 2262 109 0 0 chr11 73511604 73511898 -77271655 - AluSx SINE Alu -18 294 1 2231 116 0 10 chr11 73512101 73512411 -77271142 - AluSx SINE Alu -5 307 1 237 267 128 0 chr11 73512522 73512608 -77270945 + L2 LINE L2 3138 3234 -38 1896 120 25 0 chr11 73512654 73512937 -77270616 - AluJo SINE Alu -22 290 1 213 209 0 0 chr11 73513127 73513170 -77270383 + GA-rich Low_complexity Low_complexity 2 44 0 353 279 114 7 chr11 73513688 73513828 -77269725 + MIR SINE MIR 28 182 -80 184 292 202 0 chr11 73513851 73513940 -77269613 + L2 LINE L2 2261 2367 -947 2206 128 0 0 chr11 73513994 73514292 -77269261 + AluSx SINE Alu 1 298 -14 453 264 155 31 chr11 73514296 73514489 -77269064 + MIR SINE MIR 2 218 -44 216 347 58 22 chr11 73514525 73514750 -77268803 + L2 LINE L2 2420 2652 -662 2243 103 0 32 chr11 73514818 73515130 -77268423 - AluSx SINE Alu -10 302 1 364 291 85 7 chr11 73515576 73515717 -77267836 - L2 LINE L2 -530 2784 2633 2034 90 59 7 chr11 73516203 73516491 -77267062 + AluSq SINE Alu 1 303 -10 333 296 20 0 chr11 73516786 73516884 -77266669 + MIR SINE MIR 40 139 -123 2017 131 28 0 chr11 73517892 73518175 -77265378 + AluSx SINE Alu 1 291 -21 195 284 15 15 chr11 73519196 73519263 -77264290 - MIR SINE MIR -116 146 80 229 277 263 1 chr11 73519385 73519530 -77264023 + MIR SINE MIR 2 174 -42 1077 173 0 6 chr11 73523269 73523609 -77259944 + (TCCA)n Simple_repeat Simple_repeat 3 513 0 1104 157 6 0 chr11 73523709 73523875 -77259678 - AluSc SINE Alu -24 285 119 2502 85 0 0 chr11 73523888 73524195 -77259358 + AluSq SINE Alu 1 307 -6 2095 97 15 0 chr11 73524380 73524649 -77258904 + AluSg SINE Alu 20 292 -18 2161 203 57 38 chr11 73525419 73525459 -77258094 - L1MB5 LINE L1 0 6174 6136 1817 151 22 26 chr11 73525459 73525770 -77257783 - AluJo SINE Alu -2 310 1 2076 134 0 26 chr11 73525771 73526084 -77257469 - AluSx SINE Alu -7 305 1 2161 203 57 38 chr11 73526084 73526641 -77256912 - L1MB5 LINE L1 -37 6137 5564 1155 166 0 0 chr11 73526641 73526816 -77256737 - AluJb SINE Alu -8 304 130 2421 81 3 3 chr11 73526820 73527129 -77256424 - AluY SINE Alu -2 309 1 2560 71 3 0 chr11 73527149 73527459 -77256094 - AluY SINE Alu 0 311 1 705 118 0 0 chr11 73527567 73527677 -77255876 + (TCCA)n Simple_repeat Simple_repeat 1 110 0 327 231 145 8 chr11 73527679 73527796 -77255757 - L2 LINE L2 -3 3269 3137 243 242 149 77 chr11 73527937 73528131 -77255422 - L2 LINE L2 -157 3115 2908 1510 181 53 4 chr11 73528460 73528741 -77254812 - AluJo SINE Alu -17 295 1 922 265 42 0 chr11 73529928 73530143 -77253410 - MER58A DNA MER1_type 0 224 1 1690 203 0 0 chr11 73530528 73530828 -77252725 + AluSx SINE Alu 4 303 -9 2327 94 7 7 chr11 73531364 73531672 -77251881 + AluSq SINE Alu 1 308 -5 331 312 144 21 chr11 73531684 73531969 -77251584 + L1ME4a LINE L1 5624 5943 -178 248 279 90 8 chr11 73531977 73532099 -77251454 + L1ME4a LINE L1 5974 6105 -16 374 350 12 0 chr11 73532462 73532625 -77250928 + (CA)n Simple_repeat Simple_repeat 2 166 0 845 161 15 0 chr11 73533427 73533557 -77249996 + FLAM_A SINE Alu 2 133 0 220 274 9 35 chr11 73534643 73534756 -77248797 + C-rich Low_complexity Low_complexity 4 113 0 210 238 143 38 chr11 73535414 73535519 -77248034 - MIR SINE MIR -33 229 114 2433 78 3 3 chr11 73535620 73535927 -77247626 + AluSx SINE Alu 1 307 -5 2505 84 3 0 chr11 73536431 73536741 -77246812 + AluSx SINE Alu 1 311 -1 2551 57 0 0 chr11 73536876 73537175 -77246378 - AluY SINE Alu -12 299 1 556 219 125 6 chr11 73537175 73537335 -77246218 + MER58A DNA MER1_type 44 222 -2 266 340 85 0 chr11 73537728 73537834 -77245719 + MIR SINE MIR 18 132 -130 885 141 4 133 chr11 73537846 73538040 -77245513 + MER82 DNA MER2_type 15 174 -479 2202 142 0 0 chr11 73538040 73538351 -77245202 + AluSx SINE Alu 1 311 -1 885 141 4 133 chr11 73538351 73538397 -77245156 + MER82 DNA MER2_type 174 224 -429 2925 135 39 0 chr11 73538480 73538946 -77244607 + MER41E LTR ERV1 29 512 0 1295 216 36 76 chr11 73538946 73539395 -77244158 + MER82 DNA MER2_type 223 653 0 299 300 10 30 chr11 73539400 73539500 -77244053 + MIR SINE MIR 136 233 -29 2389 104 0 0 chr11 73539531 73539839 -77243714 - AluSx SINE Alu -2 310 3 449 160 50 20 chr11 73540431 73540531 -77243022 - L1ME3A LINE L1 -8 6162 6060 1159 169 72 4 chr11 73540588 73540824 -77242729 + L1ME1 LINE L1 5482 5733 -433 1511 185 11 28 chr11 73540871 73541183 -77242370 - AluJo SINE Alu 0 307 1 2776 199 76 58 chr11 73541184 73541635 -77241918 - MER21B LTR ERV1 -73 790 318 2330 110 0 0 chr11 73541635 73541935 -77241618 - AluSp SINE Alu -13 300 1 2776 199 76 58 chr11 73541935 73542248 -77241305 - MER21B LTR ERV1 -545 318 12 1080 175 32 111 chr11 73542260 73542366 -77241187 + L1ME1 LINE L1 5725 5838 -496 2149 115 10 0 chr11 73542366 73542662 -77240891 + AluSx SINE Alu 1 299 -13 1080 175 32 111 chr11 73542662 73543069 -77240484 + L1ME1 LINE L1 5838 6332 -2 242 217 4 30 chr11 73543120 73543231 -77240322 + L1MB7 LINE L1 6059 6172 -5 2236 98 0 47 chr11 73543232 73543402 -77240151 - AluSq SINE Alu -11 302 152 2492 56 0 23 chr11 73543402 73543708 -77239845 - AluY SINE Alu -12 299 1 2236 98 0 47 chr11 73543708 73543854 -77239699 - AluSq SINE Alu -161 152 1 653 114 9 9 chr11 73544012 73544054 -77239499 + L1M1 LINE L1 3562 3603 -3962 1998 139 0 7 chr11 73544054 73544349 -77239204 + AluSx SINE Alu 1 293 -19 653 114 9 9 chr11 73544349 73544420 -77239133 + L1M1 LINE L1 3602 3675 -3890 1781 153 9 56 chr11 73544429 73544773 -77238780 + AluSx SINE Alu 1 312 0 1155 181 8 59 chr11 73544845 73545082 -77238471 + AluJb SINE Alu 69 293 -19 1139 53 0 8 chr11 73545419 73545552 -77238001 + AluY SINE Alu 1 132 -179 2229 111 0 25 chr11 73545565 73545880 -77237673 + AluSc SINE Alu 1 307 -2 258 197 0 61 chr11 73545880 73545946 -77237607 + L1M1 LINE L1 3808 3869 -3696 2294 108 0 3 chr11 73546130 73546435 -77237118 - AluSg SINE Alu -6 304 1 2185 77 11 7 chr11 73548155 73548428 -77235125 - AluY SINE Alu -7 304 31 2317 93 10 10 chr11 73548615 73548916 -77234637 - AluSc SINE Alu -8 301 1 1879 171 3 7 chr11 73548944 73549253 -77234300 + AluJo SINE Alu 1 308 -4 1157 292 104 26 chr11 73549434 73549664 -77233889 - L1ME2 LINE L1 -237 5927 5716 2856 86 0 0 chr11 73549664 73550023 -77233530 + THE1B LTR MaLR 3 361 -3 1157 292 104 26 chr11 73550023 73550488 -77233065 - L1ME2 LINE L1 -448 5716 5175 291 175 0 62 chr11 73550553 73550633 -77232920 + L1MC4 LINE L1 7003 7077 -965 1939 167 0 0 chr11 73550634 73550927 -77232626 + AluSq SINE Alu 1 293 -20 724 133 0 96 chr11 73550937 73551072 -77232481 + AluJ SINE Alu 14 135 -177 1692 173 35 3 chr11 73551119 73551403 -77232150 + AluJb SINE Alu 1 293 -19 1061 183 0 0 chr11 73551403 73551572 -77231981 + AluJ SINE Alu 134 302 -10 261 255 0 92 chr11 73551600 73551698 -77231855 - MIR SINE MIR -70 192 104 2529 55 0 26 chr11 73552479 73552790 -77230763 - AluY SINE Alu -8 303 1 3718 219 63 32 chr11 73552793 73552952 -77230601 + L1MC4a LINE L1 6689 6842 -966 2293 97 0 7 chr11 73552952 73553251 -77230302 + AluSx SINE Alu 1 297 -15 3718 219 63 32 chr11 73553251 73554178 -77229375 + L1MC4a LINE L1 6842 7808 0 506 335 52 24 chr11 73554216 73554467 -77229086 + L1 LINE L1 4305 4562 -1584 988 159 0 6 chr11 73554473 73554636 -77228917 - AluSg/x SINE Alu -17 295 134 2104 132 0 3 chr11 73554636 73554947 -77228606 - AluY SINE Alu -1 310 1 2227 113 0 7 chr11 73554947 73555247 -77228306 - AluSg SINE Alu -12 298 1 22 0 0 0 chr11 73555295 73555317 -77228236 + AT_rich Low_complexity Low_complexity 1 22 0 272 287 55 67 chr11 73555506 73555670 -77227883 + L2 LINE L2 2575 2736 -578 * 818 244 113 67 chr11 73555661 73556005 -77227548 - L2 LINE L2 0 3313 2954 2187 115 0 0 chr11 73556065 73556351 -77227202 + AluSx SINE Alu 14 299 -13 1068 104 0 45 chr11 73556352 73556506 -77227047 + FRAM SINE Alu 1 40 0 186 314 0 0 chr11 73556506 73556557 -77226996 - L2 LINE L2 -366 2947 2897 2299 102 10 3 chr11 73556683 73556987 -77226566 - AluSq SINE Alu -7 306 1 286 68 23 0 chr11 73556988 73557032 -77226521 + MLT1E2 LTR MaLR 561 605 -21 1078 179 0 48 chr11 73557181 73557410 -77226143 + AluJo SINE Alu 87 304 -8 2418 76 0 13 chr11 73557691 73557994 -77225559 - AluY SINE Alu -12 299 1 611 84 63 32 chr11 73557994 73558089 -77225464 - FLAM_A SINE Alu -11 131 34 1410 169 0 17 chr11 73558216 73558453 -77225100 + AluJb SINE Alu 78 310 -2 212 247 13 65 chr11 73559129 73559206 -77224347 + L2 LINE L2 3239 3311 -2 * 234 221 154 29 chr11 73559201 73559305 -77224248 + L2 LINE L2 1264 1380 -1934 755 219 77 44 chr11 73559741 73560081 -77223472 + MSTD LTR MaLR 1 396 0 2235 112 0 0 chr11 73560647 73560933 -77222620 + AluSx SINE Alu 1 286 -26 21 0 0 0 chr11 73567224 73567245 -77216308 + AT_rich Low_complexity Low_complexity 1 21 0 1805 124 0 0 chr11 73567859 73568101 -77215452 + AluSq SINE Alu 62 303 -10 21 71 0 0 chr11 73568328 73568370 -77215183 + AT_rich Low_complexity Low_complexity 1 42 0 386 331 234 14 chr11 73568689 73569450 -77214103 + L2 LINE L2 1861 2788 -526 270 294 18 55 chr11 73569529 73569638 -77213915 + L2 LINE L2 2954 3058 -214 264 276 92 11 chr11 73570430 73570517 -77213036 - MIR SINE MIR -75 133 40 183 200 25 0 chr11 73570767 73570807 -77212746 + L2 LINE L2 2906 2946 -368 1401 199 32 15 chr11 73570816 73571227 -77212326 + L1M4c LINE L1 2043 2460 -3924 1644 86 41 0 chr11 73571227 73571448 -77212105 + MER30 DNA MER1_type 1 230 0 1884 144 52 0 chr11 73571461 73571752 -77211801 - AluSx SINE Alu -6 306 1 1020 242 58 8 chr11 73571821 73572181 -77211372 + L1M4c LINE L1 2470 2847 -3535 2245 124 0 0 chr11 73572181 73572472 -77211081 + AluSx SINE Alu 1 291 -21 2304 101 3 0 chr11 73572472 73572768 -77210785 + AluSg SINE Alu 1 298 -12 864 207 0 0 chr11 73572888 73573038 -77210515 + FRAM SINE Alu 8 157 -19 452 188 214 0 chr11 73573075 73573192 -77210361 - MER5A DNA MER1_type 0 189 48 2403 102 0 0 chr11 73574133 73574438 -77209115 + AluSg SINE Alu 3 307 -3 225 132 0 26 chr11 73575350 73575388 -77208165 - MIR SINE MIR -79 183 147 204 359 0 0 chr11 73575820 73575884 -77207669 + CT-rich Low_complexity Low_complexity 2 65 0 450 95 0 0 chr11 73576304 73576367 -77207186 - AluSx SINE Alu -15 297 235 1478 86 5 5 chr11 73576367 73576553 -77207000 - AluSx SINE Alu -125 187 2 2571 68 0 0 chr11 73576738 73577049 -77206504 + AluY SINE Alu 1 311 0 2438 243 36 29 chr11 73577112 73577434 -77206119 + MER66-int LTR ERV1 5922 6240 -436 1203 420 33 0 chr11 73577434 73577736 -77205817 + AluSx SINE Alu 1 312 0 2438 243 36 29 chr11 73577736 73578142 -77205411 + MER66-int LTR ERV1 6240 6655 -21 1685 97 105 12 chr11 73578142 73578400 -77205153 + AluSx SINE Alu 16 297 -15 2256 72 0 7 chr11 73578400 73578677 -77204876 + AluY SINE Alu 1 275 -36 216 0 0 0 chr11 73578682 73578706 -77204847 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1364 229 8 122 chr11 73578811 73579020 -77204533 + MER41B LTR ERV1 157 388 -247 2295 81 20 3 chr11 73579020 73579317 -77204236 + AluSc SINE Alu 1 302 -7 1978 88 70 7 chr11 73579317 73579600 -77203953 + AluSq SINE Alu 1 302 -11 1364 229 8 122 chr11 73579600 73579891 -77203662 + MER41B LTR ERV1 386 601 -34 2064 126 44 6 chr11 73579892 73580234 -77203319 - MER4C LTR ERV1 -110 355 1 814 276 35 28 chr11 73580234 73580553 -77203000 + L1ME3 LINE L1 5787 6107 -55 2165 115 0 16 chr11 73580553 73580858 -77202695 + AluSx SINE Alu 1 300 -12 2382 89 10 0 chr11 73580858 73581162 -77202391 + AluSp SINE Alu 1 307 -6 2101 124 31 0 chr11 73581180 73581470 -77202083 + AluSq SINE Alu 1 299 -14 530 140 0 11 chr11 73581482 73581575 -77201978 + L1MB2 LINE L1 6080 6171 0 1044 129 0 31 chr11 73581670 73581833 -77201720 - FRAM SINE Alu -6 160 3 2169 117 27 3 chr11 73581877 73582175 -77201378 + AluSx SINE Alu 1 305 -7 717 281 25 10 chr11 73582746 73582949 -77200604 - MIR SINE MIR 0 262 57 1223 136 0 0 chr11 73583298 73583467 -77200086 - AluJb SINE Alu -9 303 135 202 268 18 18 chr11 73583789 73583845 -77199708 - MIR SINE MIR -1 261 206 423 226 10 27 chr11 73584114 73584232 -77199321 - MIR SINE MIR -72 136 19 527 303 67 14 chr11 73584663 73584947 -77198606 - MLT1K LTR MaLR -200 388 90 358 327 143 37 chr11 73585241 73585458 -77198095 - MIR SINE MIR -2 260 21 2124 95 24 3 chr11 73585489 73585785 -77197768 - AluSc SINE Alu -2 307 6 1259 188 0 0 chr11 73585812 73586014 -77197539 + AluJb SINE Alu 82 283 -29 2456 65 0 3 chr11 73586045 73586362 -77197191 + AluY SINE Alu 1 316 0 253 363 86 41 chr11 73586566 73586680 -77196873 + L2 LINE L2 2968 3075 -197 243 0 0 0 chr11 73586680 73586707 -77196846 + (CA)n Simple_repeat Simple_repeat 2 28 0 253 363 86 41 chr11 73586707 73586760 -77196793 + L2 LINE L2 3075 3124 -148 396 68 41 0 chr11 73586760 73586833 -77196720 + (TG)n Simple_repeat Simple_repeat 2 77 0 253 363 86 41 chr11 73586833 73586956 -77196597 + L2 LINE L2 3124 3272 0 185 235 165 24 chr11 73587530 73587615 -77195938 + MIR SINE MIR 42 138 -70 2022 87 0 4 chr11 73587676 73587929 -77195624 - AluSx SINE Alu -14 298 47 208 185 142 19 chr11 73588505 73588608 -77194945 - L2 LINE L2 -253 3060 2930 195 229 38 97 chr11 73589113 73589212 -77194341 + MIR SINE MIR 43 154 -54 413 286 105 0 chr11 73589376 73589509 -77194044 - MIR SINE MIR -8 254 108 2114 83 69 0 chr11 73589629 73589906 -77193647 - AluY SINE Alu -15 296 1 302 312 123 67 chr11 73589906 73590257 -77193296 + L2 LINE L2 2843 3216 -56 2411 95 0 0 chr11 73590911 73591206 -77192347 + AluSx SINE Alu 1 295 -17 216 97 0 0 chr11 73591306 73591337 -77192216 + (A)n Simple_repeat Simple_repeat 1 31 0 1936 143 0 50 chr11 73591749 73592071 -77191482 + AluJb SINE Alu 1 306 -6 195 42 0 0 chr11 73592449 73592473 -77191080 + (T)n Simple_repeat Simple_repeat 1 24 0 2128 118 10 0 chr11 73592602 73592898 -77190655 - AluSx SINE Alu -13 299 1 444 171 19 38 chr11 73592899 73593004 -77190549 - L1ME1 LINE L1 -339 5827 5725 2915 208 67 48 chr11 73593016 73593329 -77190224 + MER21B LTR ERV1 12 318 -545 2195 113 0 0 chr11 73593329 73593629 -77189924 + AluSp SINE Alu 1 300 -13 2915 208 67 48 chr11 73593629 73594080 -77189473 + MER21B LTR ERV1 318 790 -73 1414 185 11 28 chr11 73594081 73594393 -77189160 + AluJo SINE Alu 1 307 0 1174 169 72 4 chr11 73594440 73594676 -77188877 - L1ME1 LINE L1 -433 5733 5482 450 205 62 20 chr11 73594685 73594833 -77188720 + L1ME3A LINE L1 6003 6162 -2 2265 104 0 0 chr11 73595425 73595733 -77187820 + AluSx SINE Alu 3 310 -2 287 300 10 30 chr11 73595764 73595864 -77187689 - MIR SINE MIR -29 233 136 1366 216 36 76 chr11 73595869 73596318 -77187235 - MER82 DNA MER2_type 0 653 223 2968 135 39 0 chr11 73596318 73596784 -77186769 - MER41E LTR ERV1 0 512 29 876 154 8 127 chr11 73596867 73596913 -77186640 - MER82 DNA MER2_type -429 224 174 2088 142 0 0 chr11 73596913 73597224 -77186329 - AluSx SINE Alu -1 311 1 876 154 8 127 chr11 73597224 73597430 -77186123 - MER82 DNA MER2_type -479 174 2 254 340 85 0 chr11 73597430 73597536 -77186017 - MIR SINE MIR -130 132 18 578 217 124 6 chr11 73597929 73598090 -77185463 - MER58A DNA MER1_type -2 222 43 636 137 0 46 chr11 73598090 73598221 -77185332 + AluYb8 SINE Alu 2 126 -192 1416 52 0 6 chr11 73598229 73598402 -77185151 - AluY SINE Alu -139 172 1 1486 113 121 4 chr11 73598402 73598641 -77184912 - AluSx SINE Alu -6 306 40 1427 277 49 5 chr11 73598641 73599194 -77184359 - L1M4 LINE L1 -3093 3053 2477 1511 207 42 39 chr11 73599195 73599299 -77184254 + MER89 LTR ERV1 99 201 -358 1462 157 96 43 chr11 73599299 73599579 -77183974 - AluSg SINE Alu -5 295 1 1511 207 42 39 chr11 73599579 73599831 -77183722 + MER89 LTR ERV1 201 456 -103 679 221 0 0 chr11 73599831 73599962 -77183591 - FRAM SINE Alu -1 175 45 1507 173 36 4 chr11 73600022 73600300 -77183253 + AluJb SINE Alu 6 292 -20 2099 197 67 9 chr11 73601295 73601577 -77181976 + Charlie1 DNA MER1_type 2193 2457 -304 2310 95 0 0 chr11 73601577 73601882 -77181671 + AluY SINE Alu 1 305 -6 2099 197 67 9 chr11 73601882 73602137 -77181416 + Charlie1 DNA MER1_type 2457 2761 0 465 245 123 12 chr11 73602273 73602436 -77181117 + MLT1A1 LTR MaLR 185 365 0 1660 160 61 26 chr11 73602436 73602614 -77180939 + L1MC3 LINE L1 7429 7599 -186 2200 91 3 0 chr11 73602614 73602912 -77180641 + AluY SINE Alu 2 300 -11 1660 160 61 26 chr11 73602912 73603076 -77180477 + L1MC3 LINE L1 7599 7783 -2 330 316 26 35 chr11 73603077 73603191 -77180362 + L1M4 LINE L1 4141 4253 -1893 2627 20 0 0 chr11 73603195 73603491 -77180062 + AluY SINE Alu 1 296 -15 3522 215 54 25 chr11 73603491 73604418 -77179135 + L1MC4a LINE L1 6855 7808 0 424 266 42 70 chr11 73604462 73604713 -77178840 + L1M4 LINE L1 4316 4553 -1593 2032 117 10 10 chr11 73604713 73604875 -77178678 - AluSx SINE Alu -14 298 134 2340 78 7 0 chr11 73604875 73605182 -77178371 - AluY SINE Alu -1 310 2 2032 117 10 10 chr11 73605182 73605317 -77178236 - AluSx SINE Alu -177 135 1 424 266 42 70 chr11 73605317 73605467 -77178086 + L1M4 LINE L1 4553 4706 -1440 1697 139 36 7 chr11 73605605 73605964 -77177589 + AluJo SINE Alu 1 367 0 463 239 74 0 chr11 73605968 73606131 -77177422 + L1ME4a LINE L1 5947 6121 0 1714 161 0 20 chr11 73606140 73606432 -77177121 + AluJo SINE Alu 1 286 -26 348 43 0 0 chr11 73606433 73606479 -77177074 + (CATA)n Simple_repeat Simple_repeat 2 47 0 235 267 105 19 chr11 73606966 73607071 -77176482 + MIR SINE MIR 59 127 -81 291 333 68 68 chr11 73607721 73607803 -77175750 - MIR SINE MIR -66 196 115 1772 151 20 3 chr11 73607803 73608095 -77175458 + AluJb SINE Alu 2 298 -14 291 333 68 68 chr11 73608095 73608189 -77175364 - MIR SINE MIR -146 116 20 319 323 77 0 chr11 73608481 73608611 -77174942 + MIR SINE MIR 59 198 -64 2184 104 20 0 chr11 73610034 73610333 -77173220 - AluSq SINE Alu -8 305 1 225 65 0 0 chr11 73610333 73610364 -77173189 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1767 104 54 40 chr11 73610364 73610642 -77172911 - AluSc SINE Alu -27 282 1 257 236 4 0 chr11 73610773 73610847 -77172706 + MIR SINE MIR 46 121 -87 266 284 57 0 chr11 73610994 73611082 -77172471 + MER115 DNA AcHobo 112 204 -489 318 321 74 6 chr11 73611155 73611317 -77172236 + MER115 DNA AcHobo 445 617 -76 26 0 0 0 chr11 73611340 73611366 -77172187 + AT_rich Low_complexity Low_complexity 1 26 0 2005 120 0 17 chr11 73611372 73611672 -77171881 - AluSq SINE Alu -8 305 11 1146 131 0 6 chr11 73611778 73611953 -77171600 + AluJb SINE Alu 137 310 -2 2349 67 0 19 chr11 73612063 73612378 -77171175 - AluY SINE Alu -2 309 1 1177 23 0 0 chr11 73612378 73612511 -77171042 - AluY SINE Alu -178 133 1 1960 120 41 3 chr11 73612658 73612950 -77170603 + AluSx SINE Alu 1 303 -9 406 222 152 10 chr11 73613060 73613159 -77170394 - MER81 DNA DNA -1 113 1 833 128 0 0 chr11 73613701 73613847 -77169706 - AluJb SINE Alu 0 311 166 8120 165 23 34 chr11 73613847 73614077 -77169476 + MSTA-int LTR MaLR 156 387 -1264 1913 142 3 7 chr11 73614077 73614373 -77169180 - AluSc SINE Alu -14 295 1 8120 165 23 34 chr11 73614373 73615654 -77167899 + MSTA-int LTR MaLR 387 1651 0 2170 161 82 25 chr11 73615654 73616017 -77167536 + MSTA LTR MaLR 1 391 -37 2137 124 0 0 chr11 73616017 73616323 -77167230 - AluSq SINE Alu -7 306 1 2170 161 82 25 chr11 73616323 73616364 -77167189 + MSTA LTR MaLR 391 428 0 231 180 60 0 chr11 73616365 73616415 -77167138 + MIR SINE MIR 92 144 -118 1772 213 82 34 chr11 73616433 73616717 -77166836 - MLT1D LTR MaLR 0 505 187 2147 114 0 0 chr11 73616717 73617016 -77166537 - AluSq SINE Alu -14 299 1 1772 213 82 34 chr11 73617016 73617209 -77166344 - MLT1D LTR MaLR -318 187 5 1458 97 5 0 chr11 73617577 73617773 -77165780 + AluSp SINE Alu 97 293 -20 726 133 0 96 chr11 73617783 73617918 -77165635 + AluJ SINE Alu 14 135 -177 1565 176 35 3 chr11 73617965 73618249 -77165304 + AluJb SINE Alu 1 293 -19 994 183 0 0 chr11 73618249 73618418 -77165135 + AluJ SINE Alu 134 302 -10 243 276 0 92 chr11 73618446 73618544 -77165009 - MIR SINE MIR -70 192 104 1295 93 0 0 chr11 73619325 73619497 -77164056 - AluSg/x SINE Alu -8 304 133 2462 55 0 13 chr11 73619504 73619811 -77163742 - AluY SINE Alu -8 303 1 2100 113 0 7 chr11 73619811 73620111 -77163442 - AluSg SINE Alu -12 298 1 21 0 0 0 chr11 73620159 73620180 -77163373 + AT_rich Low_complexity Low_complexity 1 21 0 260 305 43 55 chr11 73620369 73620533 -77163020 + L2 LINE L2 2575 2736 -578 * 788 244 113 68 chr11 73620524 73620860 -77162693 - L2 LINE L2 0 3313 2963 2072 115 0 0 chr11 73620928 73621214 -77162339 + AluSx SINE Alu 14 299 -13 1003 122 0 0 chr11 73621215 73621354 -77162199 + AluJo/FRAM SINE Alu 166 304 -8 528 257 257 32 chr11 73621355 73621760 -77161793 - L2 LINE L2 -350 2964 2469 199 276 185 55 chr11 73621864 73622194 -77161359 + L2 LINE L2 2851 3223 -90 363 235 47 54 chr11 73622291 73622440 -77161113 - MIR SINE MIR -92 170 23 211 286 26 0 chr11 73622812 73622889 -77160664 + MIR SINE MIR 62 140 -68 24 0 0 0 chr11 73622926 73622950 -77160603 + GC_rich Low_complexity Low_complexity 1 24 0 36 82 0 0 chr11 73622989 73623074 -77160479 + GC_rich Low_complexity Low_complexity 1 85 0 1976 110 16 10 chr11 73623835 73624145 -77159408 - AluSq SINE Alu -1 312 1 2314 109 0 0 chr11 73624400 73624711 -77158842 + AluSx SINE Alu 1 311 -1 238 287 58 11 chr11 73624915 73625002 -77158551 + MER103 DNA DNA 53 143 -23 254 236 0 0 chr11 73626605 73626660 -77156893 + (CCCTG)n Simple_repeat Simple_repeat 1 55 0 198 167 0 0 chr11 73627023 73627059 -77156494 + (CAT)n Simple_repeat Simple_repeat 1 36 0 489 47 0 0 chr11 73627345 73627409 -77156144 + (TG)n Simple_repeat Simple_repeat 1 64 0 624 184 15 117 chr11 73627942 73628141 -77155412 + MER58B DNA MER1_type 1 180 -2240 1498 141 78 7 chr11 73628141 73628410 -77155143 - AluJb SINE Alu -24 288 1 519 172 45 119 chr11 73628429 73628563 -77154990 + AluJo SINE Alu 127 250 -62 1069 179 5 36 chr11 73628563 73628787 -77154766 + AluJo SINE Alu 85 301 -11 443 153 274 8 chr11 73628791 73628915 -77154638 + MER58B DNA MER1_type 185 341 0 2015 95 57 3 chr11 73629831 73629954 -77153599 + AluSp SINE Alu 1 116 -197 261 0 0 0 chr11 73629954 73629983 -77153570 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2015 95 57 3 chr11 73629983 73630155 -77153398 + AluSp SINE Alu 116 312 -1 782 158 7 43 chr11 73630167 73630306 -77153247 + AluSq/x SINE Alu 2 135 -177 229 299 26 34 chr11 73630783 73630900 -77152653 - MER5B DNA MER1_type -5 173 58 341 268 25 44 chr11 73630941 73631089 -77152464 - MIR3 SINE MIR -50 158 7 1886 134 0 20 chr11 73631094 73631392 -77152161 - AluSx SINE Alu -20 292 1 2156 84 3 0 chr11 73632361 73632646 -77150907 + AluSx SINE Alu 1 286 -26 275 0 29 0 chr11 73632649 73632684 -77150869 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 219 233 0 0 chr11 73633320 73633363 -77150190 - MIR SINE MIR -3 259 217 2073 77 0 18 chr11 73634082 73634368 -77149185 + AluY SINE Alu 1 281 -30 383 0 21 0 chr11 73634370 73634417 -77149136 + (TA)n Simple_repeat Simple_repeat 1 48 0 393 22 0 0 chr11 73634424 73634470 -77149083 + (CA)n Simple_repeat Simple_repeat 2 47 0 316 317 29 0 chr11 73634848 73634952 -77148601 - L2 LINE L2 -183 3089 2983 191 290 87 0 chr11 73634950 73635019 -77148534 - MIR SINE MIR -70 192 118 * 1999 96 41 0 chr11 73636072 73636363 -77147190 - AluSq SINE Alu -10 303 1 2131 121 3 0 chr11 73636506 73636812 -77146741 + AluSx SINE Alu 1 307 -5 225 271 0 29 chr11 73636853 73636923 -77146630 + L1MC5 LINE L1 7846 7913 -48 315 93 0 0 chr11 73636955 73636998 -77146555 - L1MA2 LINE L1 -2 6302 6260 223 234 0 0 chr11 73637151 73637198 -77146355 + L2 LINE L2 2721 2767 -547 264 152 0 0 chr11 73637204 73637250 -77146303 + L2 LINE L2 3012 3057 -215 415 136 210 0 chr11 73638084 73638165 -77145388 + MER2 DNA MER2_type 1 98 -247 1535 158 11 7 chr11 73638168 73638407 -77145146 - MER7A DNA MER2_type -2706 332 92 2252 92 0 7 chr11 73638407 73638710 -77144843 + AluSx SINE Alu 1 301 -11 1535 158 11 7 chr11 73638710 73638748 -77144805 - MER7A DNA MER2_type -2946 92 56 1716 151 22 26 chr11 73639661 73639972 -77143581 - AluJo SINE Alu -2 310 1 2240 91 0 13 chr11 73639973 73640280 -77143273 - AluSg SINE Alu -7 303 1 645 155 0 0 chr11 73640280 73640377 -77143176 - AluSg/x SINE Alu -17 295 199 271 250 33 43 chr11 73640379 73640471 -77143082 - AluJb SINE Alu -147 155 65 1079 154 101 4 chr11 73640693 73640920 -77142633 - L1MB3 LINE L1 -145 6038 5790 2112 98 3 10 chr11 73640922 73641218 -77142335 + AluSx SINE Alu 1 294 -18 775 66 0 66 chr11 73641219 73641341 -77142212 - L1MA3 LINE L1 -367 5938 5825 2360 77 3 3 chr11 73641342 73641653 -77141900 + AluY SINE Alu 1 311 0 2341 81 0 3 chr11 73641673 73641983 -77141570 + AluY SINE Alu 1 309 -2 1094 160 0 0 chr11 73641987 73642162 -77141391 + FRAM SINE Alu 1 168 -8 2273 212 57 24 chr11 73642162 73642718 -77140835 + L1MB5 LINE L1 5564 6141 -33 1910 131 0 32 chr11 73642718 73643032 -77140521 + AluSx SINE Alu 1 304 -8 2273 212 57 24 chr11 73643032 73643059 -77140494 + L1MB5 LINE L1 6141 6166 -8 2009 140 0 0 chr11 73643694 73643994 -77139559 + AluSq SINE Alu 1 300 -13 455 276 92 41 chr11 73644587 73644783 -77138770 + MIR SINE MIR 23 228 -34 2334 111 14 27 chr11 73644839 73645207 -77138346 + THE1B LTR MaLR 2 364 0 264 275 83 26 chr11 73647063 73647256 -77136297 + MLT2E LTR ERVL 418 621 -7 207 322 85 0 chr11 73647298 73647416 -77136137 - MER91B DNA MER1_type -40 150 23 332 246 54 46 chr11 73647656 73647786 -77135767 + MIR SINE MIR 14 144 -118 1576 126 4 18 chr11 73647791 73648068 -77135485 + AluSq SINE Alu 30 302 -11 309 93 0 0 chr11 73648217 73648260 -77135293 - L1MA2 LINE L1 -2 6302 6260 230 234 0 0 chr11 73648412 73648459 -77135094 + L2 LINE L2 2721 2767 -547 269 125 21 0 chr11 73648463 73648511 -77135042 + L2 LINE L2 3009 3057 -215 439 136 210 0 chr11 73649345 73649426 -77134127 + MER2 DNA MER2_type 1 98 -247 1602 134 43 36 chr11 73649429 73649668 -77133885 - MER7A DNA MER2_type -2706 332 91 2237 92 0 7 chr11 73649668 73649971 -77133582 + AluSx SINE Alu 1 301 -11 1602 134 43 36 chr11 73649971 73650008 -77133545 - MER7A DNA MER2_type -2947 91 56 2119 101 0 22 chr11 73651037 73651354 -77132199 + AluSg SINE Alu 1 310 0 25 0 0 0 chr11 73651401 73651426 -77132127 + AT_rich Low_complexity Low_complexity 1 25 0 1289 93 16 5 chr11 73651526 73651719 -77131834 + AluSp SINE Alu 113 307 -6 1961 97 15 0 chr11 73651904 73652173 -77131380 + AluSg SINE Alu 20 292 -18 282 43 22 0 chr11 73652942 73652988 -77130565 - L1MB4 LINE L1 0 6180 6134 * 1947 84 5 97 chr11 73652950 73652988 -77130565 + L1MA3 LINE L1 5777 5817 -488 1666 148 23 26 chr11 73652988 73653293 -77130260 - AluJo SINE Alu -8 304 1 2004 113 3 13 chr11 73653300 73653601 -77129952 - AluY SINE Alu -13 298 1 1947 84 5 97 chr11 73653601 73653725 -77129828 + L1MA3 LINE L1 5823 5957 -348 2202 99 0 0 chr11 73653725 73654017 -77129536 - AluSg SINE Alu -18 292 1 1947 84 5 97 chr11 73654017 73654229 -77129324 + L1MA3 LINE L1 5957 6130 -175 1134 129 14 38 chr11 73654374 73654583 -77128970 + AluSg/x SINE Alu 101 304 -8 1599 181 3 13 chr11 73654590 73654894 -77128659 + AluJb SINE Alu 2 302 -10 1074 198 69 38 chr11 73656208 73656496 -77127057 + L1MA7 LINE L1 5985 6281 -10 279 0 0 0 chr11 73656508 73656539 -77127014 + (T)n Simple_repeat Simple_repeat 1 31 0 1030 282 230 15 chr11 73656741 73657529 -77126024 - L2 LINE L2 -1289 2025 1069 530 274 135 4 chr11 73657743 73657980 -77125573 - L1ME LINE L1 -503 5941 5674 * 1292 142 81 28 chr11 73657972 73658339 -77125214 - L1MB8 LINE L1 -6 6160 5739 4239 172 90 14 chr11 73658346 73659136 -77124417 + MER21B LTR ERV1 11 860 -3 688 180 72 4 chr11 73659153 73659360 -77124193 - L1MB8 LINE L1 -448 5736 5360 1881 152 0 10 chr11 73659375 73659677 -77123876 - AluJo SINE Alu -13 299 1 246 205 12 36 chr11 73659677 73659760 -77123793 - L1ME LINE L1 -777 5677 5597 520 318 75 15 chr11 73659814 73660216 -77123337 - L1M4 LINE L1 -2411 3735 3310 4011 52 4 0 chr11 73660246 73660731 -77122822 - SVA Other Other 0 1386 900 225 0 0 0 chr11 73660831 73660856 -77122697 + (A)n Simple_repeat Simple_repeat 1 25 0 3981 232 57 14 chr11 73660870 73661498 -77122055 - L1ME LINE L1 -2537 3889 3290 1971 129 7 3 chr11 73661498 73661793 -77121760 + AluSx SINE Alu 1 296 -16 3981 232 57 14 chr11 73661793 73662438 -77121115 - L1ME LINE L1 -3136 3290 2561 414 155 0 14 chr11 73662439 73662510 -77121043 - AluJo SINE Alu -17 295 226 814 141 20 54 chr11 73662521 73662670 -77120883 - AluJo SINE Alu -155 157 14 263 156 0 0 chr11 73662677 73662722 -77120831 - L1ME LINE L1 -3860 2566 2522 1381 171 60 17 chr11 73663076 73663237 -77120316 - L1MCa LINE L1 -3948 2478 2325 1929 86 0 4 chr11 73663237 73663494 -77120059 - AluY SINE Alu -18 293 38 1381 171 60 17 chr11 73663494 73663705 -77119848 - L1MCa LINE L1 -4101 2325 2134 559 211 30 23 chr11 73663712 73663757 -77119796 + Tigger1 DNA MER2_type 6 49 -2369 297 0 0 0 chr11 73663757 73663790 -77119763 + (TG)n Simple_repeat Simple_repeat 2 34 0 559 211 30 23 chr11 73663790 73663877 -77119676 + Tigger1 DNA MER2_type 49 139 -2279 * 930 170 78 19 chr11 73663873 73664079 -77119474 + Tigger1 DNA MER2_type 2200 2417 -1 3150 171 103 35 chr11 73664086 73665125 -77118428 - L1MCa LINE L1 -4297 2129 918 1752 137 42 11 chr11 73665125 73665410 -77118143 + AluJb SINE Alu 1 294 -18 3150 171 103 35 chr11 73665410 73665480 -77118073 - L1MCa LINE L1 -5508 918 854 369 0 0 0 chr11 73665541 73665582 -77117971 + (TG)n Simple_repeat Simple_repeat 2 42 0 1345 170 78 26 chr11 73665582 73665852 -77117701 - AluJo SINE Alu -28 284 1 705 123 8 31 chr11 73665852 73665982 -77117571 - L1MB3 LINE L1 -41 6142 6016 1159 105 147 0 chr11 73665984 73666174 -77117379 + MER30 DNA MER1_type 13 230 0 2625 164 67 12 chr11 73666174 73666351 -77117202 - L1MB3 LINE L1 -161 6022 5856 1502 163 60 23 chr11 73666351 73666651 -77116902 - AluJo SINE Alu -1 311 1 2625 164 67 12 chr11 73666651 73666980 -77116573 - L1MB3 LINE L1 -327 5856 5488 215 300 291 5 chr11 73667095 73667318 -77116235 + L2 LINE L2 2028 2314 -1000 265 226 217 19 chr11 73667401 73667507 -77116046 + MIR SINE MIR 94 220 -42 755 185 12 37 chr11 73667632 73667794 -77115759 - FRAM SINE Alu -13 163 6 351 113 352 0 chr11 73667888 73667959 -77115594 - AluJ/FLAM SINE Alu -206 96 1 2155 102 0 6 chr11 73668023 73668336 -77115217 + AluY SINE Alu 1 311 0 683 126 0 18 chr11 73668336 73668447 -77115106 + L1MA3 LINE L1 6145 6253 -52 1252 90 0 0 chr11 73668449 73668615 -77114938 + AluSc SINE Alu 1 166 -143 207 0 0 0 chr11 73668615 73668638 -77114915 + (A)n Simple_repeat Simple_repeat 1 23 0 1671 115 0 31 chr11 73668740 73669027 -77114526 - AluSc SINE Alu -31 278 1 1890 150 35 0 chr11 73669027 73669341 -77114212 - Tigger4(Zombi) DNA MER2_type -165 2566 2242 1066 139 80 0 chr11 73669338 73669525 -77114028 - Tigger4(Zombi) DNA MER2_type -2528 203 2 * 481 293 110 70 chr11 73669525 73669811 -77113742 - L1MEc LINE L1 -4745 1651 1345 1743 154 24 0 chr11 73669811 73670103 -77113450 - AluJo SINE Alu -13 299 1 481 293 110 70 chr11 73670103 73670188 -77113365 - L1MEc LINE L1 -5051 1345 1265 390 281 41 16 chr11 73670436 73670557 -77112996 - L2 LINE L2 -9 3304 3181 308 347 33 8 chr11 73670583 73670704 -77112849 - L1MEc LINE L1 -5976 229 106 553 273 23 24 chr11 73672005 73672169 -77111384 + MIR SINE MIR 1 168 -40 1938 94 0 105 chr11 73672169 73672511 -77111042 + AluSq SINE Alu 1 306 -7 553 273 23 24 chr11 73672511 73672523 -77111030 + MIR SINE MIR 168 179 -29 4119 180 50 10 chr11 73672637 73673537 -77110016 - L1MB3 LINE L1 -62 6121 5186 803 156 0 15 chr11 73673546 73673681 -77109872 - FLAM_C SINE Alu -10 133 1 3482 208 44 55 chr11 73673718 73674009 -77109544 - L1 LINE L1 -992 5154 4861 1825 117 46 11 chr11 73674009 73674292 -77109261 + AluSx SINE Alu 1 293 -19 3482 208 44 55 chr11 73674292 73674833 -77108720 - L1 LINE L1 -1285 4861 4316 844 215 12 0 chr11 73674833 73674996 -77108557 - AluJ SINE Alu -26 286 122 3482 208 44 55 chr11 73674996 73675046 -77108507 - L1 LINE L1 -1830 4316 4267 270 0 0 0 chr11 73675046 73675076 -77108477 + (TG)n Simple_repeat Simple_repeat 1 30 0 3482 208 44 55 chr11 73675076 73675357 -77108196 - L1 LINE L1 -1879 4267 3961 1413 131 20 33 chr11 73675367 73675612 -77107941 - AluJb SINE Alu -12 300 59 893 128 0 0 chr11 73676084 73676217 -77107336 - AluJ SINE Alu -179 133 1 1798 262 129 43 chr11 73677007 73677283 -77106270 - L1ME2 LINE L1 -6 6158 5907 1828 144 0 13 chr11 73677283 73677582 -77105971 - AluSx SINE Alu -17 295 1 1798 262 129 43 chr11 73677582 73678041 -77105512 - L1ME2 LINE L1 -257 5907 5360 764 248 38 33 chr11 73678046 73678256 -77105297 + Tigger5 DNA MER2_type 6 216 -2107 562 286 127 23 chr11 73678288 73678683 -77104870 - L1ME2 LINE L1 -787 5359 4924 239 336 149 0 chr11 73678919 73679053 -77104500 - MIR SINE MIR -88 174 21 219 133 0 0 chr11 73681034 73681079 -77102474 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 199 276 92 26 chr11 73682238 73682314 -77101239 + L2 LINE L2 3005 3085 -187 359 283 34 90 chr11 73682667 73682900 -77100653 + MIR SINE MIR 29 248 -14 414 271 154 49 chr11 73686314 73686673 -77096880 - L1M4 LINE L1 -529 5645 5246 1132 171 53 33 chr11 73686839 73687084 -77096469 + AluJo SINE Alu 46 295 -17 296 120 27 27 chr11 73687096 73687171 -77096382 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 582 227 37 37 chr11 73687255 73687418 -77096135 + MIR SINE MIR 100 262 0 263 317 88 44 chr11 73687526 73687753 -77095800 - L1ME2 LINE L1 -1328 4818 4582 574 323 144 25 chr11 73687833 73688236 -77095317 - L1ME2 LINE L1 -1711 4435 3985 1433 138 0 71 chr11 73688248 73688517 -77095036 + AluJb SINE Alu 2 251 -61 258 164 27 41 chr11 73688522 73688595 -77094958 + GA-rich Low_complexity Low_complexity 1 72 0 558 287 45 23 chr11 73688692 73688980 -77094573 - L1ME2 LINE L1 -2280 3866 3575 528 251 182 39 chr11 73689354 73689529 -77094024 - L1M4 LINE L1 -1177 4969 4820 1481 164 98 0 chr11 73689529 73689804 -77093749 - AluJb SINE Alu -10 302 1 528 251 182 39 chr11 73689804 73690062 -77093491 - L1M4 LINE L1 -1326 4820 4474 303 322 191 6 chr11 73690164 73690521 -77093032 - L1M4 LINE L1 -1809 4337 3915 379 310 130 20 chr11 73690795 73690995 -77092558 - L1M4 LINE L1 -3148 2998 2777 429 296 92 25 chr11 73691974 73692170 -77091383 + MIR SINE MIR 8 216 -46 216 277 96 24 chr11 73692597 73692680 -77090873 + MIR SINE MIR 55 143 -65 2496 69 3 0 chr11 73694717 73695020 -77088533 - AluY SINE Alu -7 304 1 644 156 92 0 chr11 73695095 73695236 -77088317 + L1MD3 LINE L1 7837 7990 -5 203 209 0 0 chr11 73695488 73695531 -77088022 + L2 LINE L2 3010 3052 -261 1553 169 61 0 chr11 73696573 73696869 -77086684 + L1MB2 LINE L1 5797 6110 -61 1350 173 10 56 chr11 73696869 73697175 -77086378 - AluSx SINE Alu -16 296 5 221 304 144 16 chr11 73697687 73697812 -77085741 + L2 LINE L2 3132 3272 0 221 191 48 32 chr11 73697898 73697961 -77085592 + MIR3 SINE MIR 124 187 -21 3212 208 78 29 chr11 73699041 73699371 -77084182 - L1ME LINE L1 -706 5394 5081 2371 93 0 0 chr11 73699371 73699662 -77083891 + AluSq SINE Alu 5 295 -18 3212 208 78 29 chr11 73699662 73700346 -77083207 - L1ME LINE L1 -1019 5081 4342 793 137 0 50 chr11 73700349 73700488 -77083065 - FLAM_C SINE Alu -1 132 1 387 83 0 0 chr11 73700496 73700556 -77082997 + (TC)n Simple_repeat Simple_repeat 2 61 0 2362 104 0 3 chr11 73701051 73701350 -77082203 + AluSg SINE Alu 1 298 -12 2082 153 0 3 chr11 73701360 73701668 -77081885 + AluSx SINE Alu 1 307 -5 2071 281 51 30 chr11 73701699 73702969 -77080584 - L1ME LINE L1 -4647 1435 271 301 324 32 32 chr11 73703072 73703299 -77080254 - L1ME LINE L1 -5580 490 264 396 276 16 8 chr11 73703385 73703508 -77080045 - LTR16A1 LTR ERVL -318 139 16 2137 148 0 0 chr11 73703645 73703948 -77079605 - AluSx SINE Alu -9 303 1 2209 102 14 0 chr11 73704334 73704629 -77078924 - AluSx SINE Alu -13 299 1 207 189 0 57 chr11 73706008 73706061 -77077492 - L2 LINE L2 -93 3220 3171 2278 90 10 13 chr11 73706143 73706444 -77077109 + AluSx SINE Alu 5 304 -8 227 31 31 0 chr11 73707335 73707367 -77076186 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 564 264 42 21 chr11 73708152 73708345 -77075208 + MER20 DNA MER1_type 23 219 0 234 315 148 0 chr11 73709073 73709181 -77074372 - MLT1L LTR MaLR -182 433 310 489 199 29 37 chr11 73710192 73710260 -77073293 - MER69 DNA AcHobo -3 2523 2456 2168 136 7 3 chr11 73710260 73710569 -77072984 + AluSx SINE Alu 1 310 -2 489 199 29 37 chr11 73710569 73710636 -77072917 - MER69 DNA AcHobo -70 2456 2389 23 0 0 0 chr11 73710840 73710863 -77072690 + AT_rich Low_complexity Low_complexity 1 23 0 353 127 32 0 chr11 73710869 73710932 -77072621 - Alu SINE Alu -3 298 234 865 189 0 0 chr11 73710932 73711085 -77072468 + AluSg/x SINE Alu 158 310 -2 6001 187 75 24 chr11 73711086 73712426 -77071127 - L1MDa LINE L1 -5129 1411 3 5325 93 34 50 chr11 73712508 73713394 -77070159 - MER4D LTR ERV1 0 872 1 314 155 2 20 chr11 73713570 73713668 -77069885 - AluJb SINE Alu -178 124 2 209 294 131 25 chr11 73714495 73714655 -77068898 - L2 LINE L2 -111 3161 2985 280 297 39 32 chr11 73714944 73715099 -77068454 + MER5A DNA MER1_type 31 186 -3 2170 69 0 11 chr11 73715123 73715403 -77068150 + AluY SINE Alu 24 300 0 2248 108 27 0 chr11 73715807 73716102 -77067451 - AluSx SINE Alu -2 310 8 306 191 16 0 chr11 73716381 73716444 -77067109 + L2 LINE L2 3172 3235 -78 200 235 39 0 chr11 73717407 73717458 -77066095 + C-rich Low_complexity Low_complexity 3 55 0 1824 165 0 0 chr11 73718160 73718433 -77065120 + AluSx SINE Alu 1 273 -39 365 205 0 33 chr11 73718435 73718557 -77064996 + GA-rich Low_complexity Low_complexity 3 120 0 2173 143 0 0 chr11 73719202 73719510 -77064043 - AluSx SINE Alu -4 308 1 219 290 159 0 chr11 73720249 73720356 -77063197 - L2 LINE L2 -556 2758 2635 2134 93 43 0 chr11 73720731 73721009 -77062544 + AluY SINE Alu 1 290 -21 1576 107 136 12 chr11 73721017 73721259 -77062294 - AluSg SINE Alu -38 272 1 594 197 8 61 chr11 73723361 73723493 -77060060 - FLAM_A SINE Alu -8 125 1 315 307 23 11 chr11 73723613 73723701 -77059852 - L1MC4 LINE L1 -1337 6705 6617 246 263 53 32 chr11 73728144 73728239 -77055314 - MIR SINE MIR -6 256 160 2787 45 0 0 chr11 73728404 73728715 -77054838 + AluY SINE Alu 1 311 0 692 43 43 0 chr11 73728849 73728941 -77054612 - AluY SINE Alu -214 97 2 1371 241 142 25 chr11 73728946 73729913 -77053640 + L2 LINE L2 2229 3313 0 1490 170 73 38 chr11 73730264 73730553 -77053000 + AluJo SINE Alu 1 299 -13 234 190 190 0 chr11 73730591 73730649 -77052904 + AluSc SINE Alu 231 299 0 1089 211 14 0 chr11 73730661 73730879 -77052674 + MER58A DNA MER1_type 1 221 -3 2343 108 3 0 chr11 73731872 73732178 -77051375 + AluSx SINE Alu 2 308 -4 2279 73 26 7 chr11 73732903 73733031 -77050522 + AluY SINE Alu 1 125 -186 2469 62 3 7 chr11 73733031 73733337 -77050216 + AluY SINE Alu 1 305 -6 2279 73 26 7 chr11 73733337 73733511 -77050042 + AluY SINE Alu 125 309 -2 239 262 214 16 chr11 73734200 73734326 -77049227 + L2 LINE L2 3163 3313 0 198 0 0 0 chr11 73734738 73734760 -77048793 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 2377 88 7 0 chr11 73734761 73735056 -77048497 + AluSx SINE Alu 4 300 -12 226 304 41 29 chr11 73735442 73735511 -77048042 + MER5B DNA MER1_type 1 68 -121 2151 98 7 0 chr11 73735511 73735796 -77047757 + AluSg1 SINE Alu 1 287 -22 226 304 41 29 chr11 73735796 73735885 -77047668 + MER5B DNA MER1_type 68 173 -16 849 214 22 67 chr11 73735920 73736144 -77047409 - MER20 DNA MER1_type 0 219 6 192 40 0 0 chr11 73736394 73736419 -77047134 + (CA)n Simple_repeat Simple_repeat 2 26 0 2184 80 70 0 chr11 73736562 73736848 -77046705 - AluSx SINE Alu -6 306 1 586 191 86 13 chr11 73737802 73737954 -77045599 - MIR SINE MIR -30 232 70 216 292 31 0 chr11 73738703 73738799 -77044754 + G-rich Low_complexity Low_complexity 6 104 0 243 253 63 0 chr11 73739390 73739469 -77044084 - L1ME LINE L1 -448 5673 5590 791 207 38 33 chr11 73739637 73739850 -77043703 + L1MB3 LINE L1 5692 5905 -278 2157 95 7 36 chr11 73739853 73740158 -77043395 + AluSx SINE Alu 1 296 -16 607 248 169 43 chr11 73740969 73741365 -77042188 + LTR16A1 LTR ERVL 12 457 0 2176 112 0 3 chr11 73741868 73742154 -77041399 - AluSx SINE Alu -17 295 11 218 264 0 14 chr11 73742333 73742405 -77041148 + (TG)n Simple_repeat Simple_repeat 1 71 0 2904 166 56 62 chr11 73742762 73743491 -77040062 + LTR8A LTR ERV1 3 727 0 928 199 70 0 chr11 73744929 73745130 -77038423 + MER20 DNA MER1_type 1 215 -4 906 189 39 114 chr11 73745491 73745848 -77037705 - MLT1A2 LTR MaLR -16 358 31 1897 160 7 13 chr11 73745848 73746148 -77037405 + AluJb SINE Alu 4 301 -11 906 189 39 114 chr11 73746148 73746177 -77037376 - MLT1A2 LTR MaLR -343 31 1 227 250 0 0 chr11 73747362 73747410 -77036143 - MER58 DNA MER1_type 0 2420 2373 664 255 56 88 chr11 73748006 73748379 -77035174 - MER69 DNA AcHobo -794 432 72 204 40 0 0 chr11 73749144 73749169 -77034384 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 629 249 91 21 chr11 73749213 73749454 -77034099 - MLT1J LTR MaLR -24 487 230 1737 176 3 70 chr11 73749619 73749758 -77033795 + MER2 DNA MER2_type 1 148 -196 2043 111 0 44 chr11 73749758 73750073 -77033480 - AluSx SINE Alu -4 308 8 1737 176 3 70 chr11 73750073 73750302 -77033251 + MER2 DNA MER2_type 148 344 0 216 267 17 0 chr11 73750324 73750384 -77033169 + L2 LINE L2 3160 3220 -52 2596 71 0 0 chr11 73751088 73751399 -77032154 - AluY SINE Alu 0 311 1 378 184 10 19 chr11 73751444 73751547 -77032006 + CT-rich Low_complexity Low_complexity 4 105 0 1611 151 13 82 chr11 73751552 73751869 -77031684 - AluJo SINE Alu -17 295 1 23485 68 17 0 chr11 73753607 73756779 -77026774 + HERVH LTR ERV1 4488 7713 0 3596 58 5 2 chr11 73756779 73757226 -77026327 + LTR7 LTR ERV1 1 448 -2 557 289 67 10 chr11 73757282 73757490 -77026063 + HERV16 LTR ERVL 2290 2509 -2487 770 203 12 31 chr11 73757543 73757609 -77025944 - MLT1E LTR MaLR -433 160 94 1653 227 22 0 chr11 73757609 73757966 -77025587 - MLT1A1 LTR MaLR 0 365 1 770 203 12 31 chr11 73757966 73758062 -77025491 - MLT1E LTR MaLR -499 94 1 694 144 184 8 chr11 73758082 73758207 -77025346 + AluJo SINE Alu 2 148 -164 2823 61 140 0 chr11 73758207 73758600 -77024953 + LTR7 LTR ERV1 1 448 -2 8988 146 14 47 chr11 73758602 73760449 -77023104 + HERVH LTR ERV1 1 1439 -5546 4933 41 6 3 chr11 73760501 73761131 -77022422 + L1PA4 LINE L1 5300 5931 -224 2320 116 0 0 chr11 73761673 73761984 -77021569 - AluSx SINE Alu 0 312 2 8693 90 144 0 chr11 73763885 73765285 -77018268 - L1P LINE L1 -1274 4872 3272 2190 107 7 13 chr11 73765479 73765787 -77017766 - AluY SINE Alu -5 306 1 998 261 198 22 chr11 73766205 73766272 -77017281 + MLT1G1 LTR MaLR 73 127 -468 2311 139 37 6 chr11 73766272 73766625 -77016928 - THE1B LTR MaLR 0 364 1 998 261 198 22 chr11 73766625 73767002 -77016551 + MLT1G1 LTR MaLR 127 595 0 465 253 58 29 chr11 73767679 73767853 -77015700 - MER53 DNA DNA 0 189 11 265 257 93 0 chr11 73768167 73768307 -77015246 - L1MEc LINE L1 -3959 2437 2285 1266 158 98 0 chr11 73768315 73768530 -77015023 - AluJb SINE Alu -76 236 1 848 216 125 11 chr11 73768530 73768794 -77014759 - L1MEc LINE L1 -4098 2298 2005 * 1204 245 40 41 chr11 73768787 73769255 -77014298 + L1ME1 LINE L1 5712 6334 0 180 132 0 79 chr11 73769288 73769326 -77014227 + L2 LINE L2 3020 3054 -218 292 264 48 40 chr11 73769548 73769673 -77013880 + MLT1J LTR MaLR 277 402 -109 1862 155 0 7 chr11 73773025 73773341 -77010212 - AluSx SINE Alu 0 314 1 26 0 0 0 chr11 73773490 73773516 -77010037 + GC_rich Low_complexity Low_complexity 1 26 0 369 0 0 0 chr11 73773537 73773578 -77009975 + (A)n Simple_repeat Simple_repeat 1 41 0 1109 295 159 32 chr11 73773635 73774339 -77009214 + L2 LINE L2 2341 3182 -131 1478 188 126 0 chr11 73774339 73774648 -77008905 - MER7A DNA MER2_type 0 346 1 1109 295 159 32 chr11 73774648 73774799 -77008754 + L2 LINE L2 3182 3313 0 376 222 20 40 chr11 73775090 73775189 -77008364 + MER5A DNA MER1_type 4 100 -89 23 0 0 0 chr11 73777731 73777754 -77005799 + AT_rich Low_complexity Low_complexity 1 23 0 2117 144 0 0 chr11 73780872 73781164 -77002389 + AluSx SINE Alu 1 292 -20 363 248 25 33 chr11 73782129 73782250 -77001303 - L1M4 LINE L1 -2964 3182 3063 1111 164 0 0 chr11 73782489 73782666 -77000887 - FRAM SINE Alu 0 176 1 244 200 0 20 chr11 73782702 73782752 -77000801 + MLT1D LTR MaLR 2 50 -455 578 311 42 17 chr11 73782754 73783111 -77000442 - L1M4 LINE L1 -3634 2512 2147 2167 95 11 7 chr11 73783111 73783396 -77000157 - AluSx SINE Alu -26 286 1 1042 351 67 12 chr11 73784430 73785181 -76998372 - ERVL LTR ERVL -825 4939 4148 1433 107 0 0 chr11 73785576 73785782 -76997771 + LTR43 LTR ERV1 389 594 -8 1055 128 51 0 chr11 73785809 73785965 -76997588 - AluSg/x SINE Alu -28 282 119 183 42 0 0 chr11 73788056 73788080 -76995473 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2126 117 0 0 chr11 73788082 73788365 -76995188 - AluSx SINE Alu -29 283 1 1132 172 41 48 chr11 73788926 73789216 -76994337 - MER58D DNA MER1_type 0 386 99 9312 143 4 33 chr11 73789216 73790889 -76992664 - HERVH LTR ERV1 -4042 2634 1523 1654 100 0 5 chr11 73791051 73791261 -76992292 - AluSc SINE Alu -100 209 1 299 239 177 0 chr11 73791262 73791375 -76992178 - MER69 DNA AcHobo -2389 137 5 830 228 56 0 chr11 73792461 73792641 -76990912 + MER58A DNA MER1_type 2 191 -33 2294 86 40 3 chr11 73792641 73792942 -76990611 + AluSx SINE Alu 1 312 0 1005 120 0 0 chr11 73793110 73793243 -76990310 - AluSq/x SINE Alu -180 133 1 850 174 19 7 chr11 73793254 73793409 -76990144 - FRAM SINE Alu -12 164 8 3448 70 7 2 chr11 73793411 73793857 -76989696 - LTR7 LTR ERV1 -2 448 1 2481 84 40 8 chr11 73793857 73794237 -76989316 - HERVH LTR ERV1 0 7713 7322 1346 129 18 5 chr11 73794235 73794452 -76989101 - HERVH LTR ERV1 -1894 5819 5600 * 4222 137 9 1 chr11 73794453 73795110 -76988443 - HERVH LTR ERV1 -2564 5149 4488 2563 96 5 5 chr11 73795112 73795497 -76988056 - HERVH LTR ERV1 -3720 3993 3609 18968 94 30 14 chr11 73795597 73798490 -76985063 + HERVH LTR ERV1 58 2995 -4718 700 139 39 0 chr11 73798469 73798598 -76984955 + HERVH LTR ERV1 3140 3273 -4440 * 2203 105 13 22 chr11 73800694 73801009 -76982544 - AluSx SINE Alu 0 312 1 389 241 17 69 chr11 73801061 73801177 -76982376 - MER81 DNA DNA -4 110 1 703 182 19 13 chr11 73801316 73801470 -76982083 + MER96B DNA MER1_type? 15 169 -248 1471 167 49 49 chr11 73801476 73801653 -76981900 + L1MB7 LINE L1 5599 5778 -406 2157 110 43 3 chr11 73801653 73801954 -76981599 + AluSp SINE Alu 1 313 0 1471 167 49 49 chr11 73801954 73802124 -76981429 + L1MB7 LINE L1 5777 5946 -238 895 172 2 1 chr11 73802124 73802283 -76981270 + MLT1C LTR MaLR 246 365 0 238 319 92 8 chr11 73802284 73802403 -76981150 + L1MC/D LINE L1 5447 5575 -2233 1633 112 103 4 chr11 73802439 73802672 -76980881 + AluSq SINE Alu 1 256 -57 576 321 74 15 chr11 73802817 73803141 -76980412 - MER69 DNA AcHobo -1724 802 460 262 294 11 33 chr11 73803189 73803281 -76980272 - MER69 DNA AcHobo -838 388 299 644 271 14 34 chr11 73803320 73803527 -76980026 + MLT1E2 LTR MaLR 373 575 -51 626 202 144 103 chr11 73803545 73803886 -76979667 + MLT1C LTR MaLR 42 396 -71 6765 83 6 9 chr11 73803988 73805392 -76978161 - HERVH LTR ERV1 -3171 4548 3053 216 0 0 0 chr11 73805514 73805538 -76978015 + (A)n Simple_repeat Simple_repeat 1 24 0 21 71 0 0 chr11 73805681 73805723 -76977830 + AT_rich Low_complexity Low_complexity 1 42 0 247 200 146 69 chr11 73806231 73806361 -76977192 + MIR SINE MIR 69 208 -54 2937 181 53 15 chr11 73806437 73807095 -76976458 - L1MB8 LINE L1 0 6178 5496 1674 131 0 125 chr11 73807095 73807430 -76976123 - AluJb SINE Alu -19 293 1 562 246 0 0 chr11 73807454 73807576 -76975977 - FLAM_A SINE Alu -9 124 3 1827 147 15 0 chr11 73807586 73807851 -76975702 - AluSx SINE Alu -20 292 24 283 191 29 0 chr11 73807877 73807945 -76975608 - L1MB8 LINE L1 -841 5333 5264 600 94 10 10 chr11 73808076 73808172 -76975381 - AluY SINE Alu -83 228 133 2412 64 0 49 chr11 73808173 73808500 -76975053 - AluY SINE Alu 0 311 1 1989 143 3 7 chr11 73808514 73808801 -76974752 - AluJb SINE Alu -26 286 1 757 204 63 9 chr11 73808802 73809023 -76974530 - L1MB8 LINE L1 -883 5263 5031 235 236 85 38 chr11 73809428 73809534 -76974019 - L1MC5 LINE L1 -77 7884 7774 1395 260 158 20 chr11 73809645 73810279 -76973274 - L1ME3A LINE L1 -153 6017 5297 1305 213 98 40 chr11 73810279 73810715 -76972838 - MLT1F1 LTR MaLR -2 558 97 1690 158 7 25 chr11 73810736 73811021 -76972532 - AluJb SINE Alu -32 280 1 357 311 158 11 chr11 73811041 73811224 -76972329 - L1ME3A LINE L1 -858 5288 5079 * 556 279 108 64 chr11 73811193 73811537 -76972016 - L1MC5 LINE L1 -184 7777 7419 2275 116 0 0 chr11 73811629 73811923 -76971630 - AluSg SINE Alu -16 294 1 2103 132 3 0 chr11 73812486 73812774 -76970779 - AluSx SINE Alu -23 289 1 922 192 76 15 chr11 73813011 73813209 -76970344 - MER6B DNA MER2_type 0 210 1 1068 189 91 9 chr11 73813277 73813580 -76969973 - MER33 DNA MER1_type -15 309 1 402 282 91 63 chr11 73813776 73814063 -76969490 - L2 LINE L2 -786 2528 2234 2366 87 3 3 chr11 73814089 73814388 -76969165 - AluSg SINE Alu -11 299 1 209 238 125 25 chr11 73814423 73814503 -76969050 - L2 LINE L2 -1 3312 3225 515 257 65 43 chr11 73814612 73814888 -76968665 - L2 LINE L2 -1209 2105 1824 422 222 58 25 chr11 73814918 73815062 -76968491 + L1MC/D LINE L1 5272 5423 -698 258 263 35 146 chr11 73815063 73815234 -76968319 + L1MC/D LINE L1 5491 5642 -2166 402 234 35 17 chr11 73816226 73816345 -76967208 - MIR3 SINE MIR -8 200 79 196 385 0 11 chr11 73816490 73816581 -76966972 - MIR3 SINE MIR -34 174 85 23 54 0 0 chr11 73816608 73816645 -76966908 + AT_rich Low_complexity Low_complexity 1 37 0 462 90 26 0 chr11 73816720 73816798 -76966755 - MADE1 DNA Mariner 0 80 1 292 293 78 0 chr11 73816849 73816953 -76966600 - MER3 DNA MER1_type -76 133 33 198 0 0 0 chr11 73817351 73817373 -76966180 + (A)n Simple_repeat Simple_repeat 1 22 0 300 316 6 23 chr11 73817401 73817572 -76965981 + L1M4 LINE L1 2193 2360 -3786 466 113 12 25 chr11 73817692 73817772 -76965781 + AluJ/FLAM SINE Alu 14 92 -220 2399 75 3 0 chr11 73817772 73818065 -76965488 + AluSc SINE Alu 1 294 -15 27 62 0 0 chr11 73818307 73818355 -76965198 + AT_rich Low_complexity Low_complexity 1 48 0 310 295 105 37 chr11 73818410 73818600 -76964953 - L1ME4a LINE L1 -119 6002 5800 246 87 61 0 chr11 73818914 73818969 -76964584 - L1MB4 LINE L1 -1 6182 6124 * 4834 158 80 25 chr11 73818938 73819162 -76964391 - L1MC3 LINE L1 -6 7779 7569 1914 129 4 0 chr11 73819162 73819418 -76964135 - AluSq SINE Alu -56 257 1 4834 158 80 25 chr11 73819418 73820237 -76963316 - L1MC3 LINE L1 -216 7569 6796 2260 101 3 0 chr11 73820237 73820523 -76963030 - AluSq SINE Alu -26 287 1 4834 158 80 25 chr11 73820523 73820538 -76963015 - L1MC3 LINE L1 -989 6796 5221 2599 233 31 22 chr11 73820570 73821333 -76962220 - L1MC3 LINE L1 -1541 4605 3836 1006 171 0 24 chr11 73821336 73821506 -76962047 - AluJb SINE Alu -19 293 128 824 187 0 8 chr11 73821523 73821657 -76961896 + AluSq/x SINE Alu 1 133 -179 22 0 0 0 chr11 73821756 73821778 -76961775 + AT_rich Low_complexity Low_complexity 1 22 0 676 221 55 0 chr11 73821786 73821949 -76961604 - L1MC3 LINE L1 -2358 3788 3617 2592 60 3 0 chr11 73821960 73822259 -76961294 + AluY SINE Alu 2 301 -10 354 345 78 24 chr11 73822723 73822929 -76960624 + MIR SINE MIR 21 237 -25 2375 86 0 13 chr11 73823940 73824242 -76959311 - AluSg SINE Alu -12 298 1 552 167 10 0 chr11 73824242 73824338 -76959215 - AluSg/x SINE Alu -17 292 196 1941 84 0 20 chr11 73824447 73824696 -76958857 + AluSp SINE Alu 52 295 -18 561 220 80 7 chr11 73824696 73824846 -76958707 + MER58B DNA MER1_type 181 341 0 1821 149 17 33 chr11 73824895 73825217 -76958336 - AluJb SINE Alu 0 312 1 527 293 132 23 chr11 73825251 73825555 -76957998 - L1ME4a LINE L1 -2 6119 5783 1747 181 3 7 chr11 73825601 73825900 -76957653 + AluJb SINE Alu 1 298 -14 354 264 116 66 chr11 73825912 73826249 -76957304 + L1MC5 LINE L1 2322 8135 -220 2298 97 0 7 chr11 73826401 73826701 -76956852 + AluSq SINE Alu 1 298 -15 432 220 100 45 chr11 73827175 73827396 -76956157 - MIR3 SINE MIR -32 230 2 224 250 78 0 chr11 73828767 73828831 -76954722 - MIR SINE MIR -122 140 72 312 247 82 31 chr11 73828949 73829046 -76954507 - MIR SINE MIR -113 149 48 1979 163 6 13 chr11 73829194 73829507 -76954046 + AluJb SINE Alu 1 311 -1 317 213 100 10 chr11 73829734 73829838 -76953715 - MIR SINE MIR -63 145 38 379 274 11 0 chr11 73830253 73830348 -76953205 + MIR SINE MIR 19 114 -148 540 272 65 18 chr11 73831122 73831339 -76952214 - MIR SINE MIR -20 242 16 2243 119 3 0 chr11 73832299 73832609 -76950944 + AluSx SINE Alu 1 311 -1 1284 137 5 0 chr11 73833977 73834167 -76949386 - AluSc SINE Alu 0 309 119 2517 85 0 0 chr11 73834180 73834487 -76949066 + AluSq SINE Alu 1 307 -6 2107 97 15 0 chr11 73834672 73834941 -76948612 + AluSg SINE Alu 20 292 -18 1834 151 22 26 chr11 73835750 73836061 -76947492 - AluJo SINE Alu -2 310 1 2379 91 0 13 chr11 73836062 73836369 -76947184 - AluSg SINE Alu -7 303 1 479 147 0 0 chr11 73836369 73836444 -76947109 - Alu SINE Alu -17 293 219 876 174 93 0 chr11 73836444 73836616 -76946937 - AluJb SINE Alu -124 188 1 1532 187 83 51 chr11 73836616 73836949 -76946604 - L1MB3 LINE L1 -41 6142 5790 2255 101 3 10 chr11 73836949 73837247 -76946306 + AluSx SINE Alu 1 296 -16 1532 187 83 51 chr11 73837247 73837347 -76946206 - L1MB3 LINE L1 -393 5790 5695 2392 60 0 3 chr11 73837472 73837755 -76945798 + AluY SINE Alu 1 282 -29 609 104 31 37 chr11 73838214 73838377 -76945176 + (TG)n Simple_repeat Simple_repeat 1 162 0 1622 184 0 63 chr11 73838451 73838767 -76944786 - AluJo SINE Alu -8 304 9 387 274 34 23 chr11 73839271 73839446 -76944107 + C-rich Low_complexity Low_complexity 2 178 0 400 298 9 0 chr11 73840829 73840943 -76942610 + MIR SINE MIR 23 137 -125 923 256 153 17 chr11 73841099 73841459 -76942094 - MLT1C LTR MaLR -7 460 52 188 379 49 16 chr11 73841889 73842132 -76941421 - MIR SINE MIR -11 251 1 1332 213 94 70 chr11 73842893 73842951 -76940602 - MLT1E3 LTR MaLR -7 617 562 1818 148 24 14 chr11 73842951 73843248 -76940305 - AluJb SINE Alu -11 301 2 1332 213 94 70 chr11 73843248 73843768 -76939785 - MLT1E3 LTR MaLR -62 562 2 371 108 4 13 chr11 73843843 73843918 -76939635 + AluJb SINE Alu 79 131 -171 2277 119 0 0 chr11 73843925 73844219 -76939334 + AluSx SINE Alu 1 294 -18 315 0 0 0 chr11 73844471 73844506 -76939047 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 2167 109 0 7 chr11 73844507 73844817 -76938736 - AluSq SINE Alu 0 309 2 1084 259 59 46 chr11 73844842 73845297 -76938256 - MLT1C LTR MaLR 0 467 7 746 178 7 22 chr11 73845322 73845457 -76938096 + FLAM_C SINE Alu 1 133 0 1443 112 0 10 chr11 73845470 73845667 -76937886 + AluY SINE Alu 1 195 -116 388 80 0 0 chr11 73845668 73845718 -76937835 + AluY SINE Alu 63 112 -189 2197 35 0 19 chr11 73845720 73845976 -76937577 + AluY SINE Alu 59 309 -2 1283 163 36 105 chr11 73845983 73846289 -76937264 + AluJo SINE Alu 1 285 -27 938 245 39 0 chr11 73846876 73847158 -76936395 - L1M4 LINE L1 -3105 3041 2749 2446 89 0 19 chr11 73847190 73847505 -76936048 - AluSg SINE Alu -1 309 1 1037 185 35 27 chr11 73847508 73847768 -76935785 - L1M4 LINE L1 -3396 2750 2489 546 284 59 6 chr11 73847834 73848003 -76935550 + MIR SINE MIR 14 191 -71 2440 95 0 0 chr11 73848265 73848571 -76934982 - AluSq SINE Alu -5 308 3 354 23 0 0 chr11 73851381 73851424 -76932129 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 2406 67 0 0 chr11 73851424 73851706 -76931847 - AluSx SINE Alu -30 282 1 839 234 13 26 chr11 73852003 73852229 -76931324 + MER58A DNA MER1_type 2 224 0 1611 194 47 85 chr11 73852301 73852703 -76930850 - MSTB LTR MaLR 0 426 40 312 91 0 0 chr11 73852710 73852754 -76930799 + (CTATG)n Simple_repeat Simple_repeat 2 45 0 2277 117 0 0 chr11 73852759 73853050 -76930503 - AluSx SINE Alu -19 293 3 180 0 0 0 chr11 73853475 73853495 -76930058 + (TCCCC)n Simple_repeat Simple_repeat 4 23 0 400 204 21 43 chr11 73855800 73855893 -76927660 - MER117 DNA MER1_type -39 158 68 200 83 0 28 chr11 73856947 73856983 -76926570 + (CGGGG)n Simple_repeat Simple_repeat 5 39 0 2415 90 3 6 chr11 73857783 73858094 -76925459 - AluSp SINE Alu -3 310 1 216 0 0 0 chr11 73858095 73858119 -76925434 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1932 158 3 0 chr11 73858119 73858404 -76925149 - AluJb SINE Alu -26 286 1 629 163 82 27 chr11 73858759 73858906 -76924647 - L1MB8 LINE L1 0 6178 6024 462 257 72 26 chr11 73859144 73859296 -76924257 - L1MD2 LINE L1 -27 6332 6174 1771 184 10 3 chr11 73859306 73859600 -76923953 - AluJo SINE Alu -14 298 3 253 319 53 18 chr11 73859766 73859879 -76923674 - MIR SINE MIR -97 165 49 347 301 21 0 chr11 73860154 73860247 -76923306 - L1MD2 LINE L1 -2352 5456 5362 2147 118 44 0 chr11 73860247 73860544 -76923009 + AluSx SINE Alu 1 310 -2 342 0 0 0 chr11 73860571 73860609 -76922944 + (TA)n Simple_repeat Simple_repeat 2 39 0 2307 96 3 3 chr11 73860684 73860977 -76922576 - AluSp SINE Alu -20 293 1 531 279 55 71 chr11 73861115 73861251 -76922302 - LTR41 LTR ERVL -6 767 630 2227 105 7 7 chr11 73861251 73861547 -76922006 + AluSq SINE Alu 1 296 -17 531 279 55 71 chr11 73861547 73861718 -76921835 - LTR41 LTR ERVL -143 630 465 2167 94 0 17 chr11 73862104 73862392 -76921161 - AluSx SINE Alu 0 312 30 310 246 54 46 chr11 73862397 73862527 -76921026 - MIR SINE MIR -118 144 14 212 322 85 0 chr11 73862767 73862885 -76920668 + MER91B DNA MER1_type 23 150 -40 271 280 83 26 chr11 73862927 73863120 -76920433 - MLT2E LTR ERVL -7 621 418 2212 111 14 27 chr11 73864977 73865345 -76918208 - THE1B LTR MaLR 0 364 2 436 271 84 26 chr11 73865401 73865556 -76917997 - MIR SINE MIR -34 228 65 32 26 0 0 chr11 73866153 73866192 -76917361 + AT_rich Low_complexity Low_complexity 1 39 0 338 293 73 30 chr11 73866483 73866575 -76916978 + MER45A DNA AcHobo 3 106 -1475 2465 75 0 16 chr11 73866575 73866882 -76916671 - AluSc SINE Alu -7 302 1 338 293 73 30 chr11 73866882 73866953 -76916600 + MER45A DNA AcHobo 106 173 -5 184 236 14 83 chr11 73867181 73867253 -76916300 - L2 LINE L2 -68 3204 3138 2369 104 10 0 chr11 73867453 73867762 -76915791 + AluSx SINE Alu 1 312 0 1061 101 32 5 chr11 73867782 73867899 -76915654 + L1M1 LINE L1 3482 3607 -3958 2009 139 0 7 chr11 73867899 73868194 -76915359 + AluSx SINE Alu 1 293 -19 1061 101 32 5 chr11 73868194 73868265 -76915288 + L1M1 LINE L1 3607 3675 -3890 1792 156 9 53 chr11 73868274 73868617 -76914936 + AluSx SINE Alu 1 312 0 1193 178 8 55 chr11 73868689 73868925 -76914628 + AluJb SINE Alu 69 293 -19 1838 160 36 24 chr11 73868926 73869238 -76914315 + L1M1 LINE L1 4555 4875 -2690 2096 97 59 7 chr11 73869238 73869527 -76914026 + AluSx SINE Alu 1 304 -8 1838 160 36 24 chr11 73869527 73869632 -76913921 + L1M1 LINE L1 4875 4977 -2588 2523 71 0 0 chr11 73869632 73869926 -76913627 - AluY SINE Alu -17 294 1 2579 84 11 86 chr11 73869927 73870050 -76913503 + L1MA3 LINE L1 5825 5956 -349 2357 99 0 0 chr11 73870050 73870342 -76913211 - AluSg SINE Alu -18 292 1 2579 84 11 86 chr11 73870342 73870560 -76912993 + L1MA3 LINE L1 5956 6189 -116 2354 74 0 56 chr11 73870560 73870883 -76912670 + AluY SINE Alu 1 305 -6 2579 84 11 86 chr11 73870883 73871001 -76912552 + L1MA3 LINE L1 6189 6251 -54 2412 78 3 0 chr11 73871001 73871297 -76912256 + AluSc SINE Alu 1 297 -12 2579 84 11 86 chr11 73871297 73871311 -76912242 + L1MA3 LINE L1 6251 6264 -41 1997 112 7 10 chr11 73871317 73871650 -76911903 + AluSx SINE Alu 1 312 0 306 0 0 0 chr11 73871652 73871686 -76911867 + (CA)n Simple_repeat Simple_repeat 2 35 0 305 317 29 0 chr11 73872064 73872168 -76911385 - L2 LINE L2 -183 3089 2983 184 290 87 0 chr11 73872166 73872235 -76911318 - MIR SINE MIR -70 192 118 * 2147 96 41 0 chr11 73873287 73873580 -76909973 - AluSq SINE Alu -8 305 1 2265 121 3 0 chr11 73873723 73874029 -76909524 + AluSx SINE Alu 1 307 -5 295 93 0 0 chr11 73874172 73874215 -76909338 - L1MA2 LINE L1 -2 6302 6260 219 234 0 0 chr11 73874368 73874415 -76909138 + L2 LINE L2 2721 2767 -547 260 152 0 0 chr11 73874421 73874467 -76909086 + L2 LINE L2 3012 3057 -215 413 136 210 0 chr11 73875301 73875382 -76908171 + MER2 DNA MER2_type 1 98 -247 1537 158 11 7 chr11 73875385 73875624 -76907929 - MER7A DNA MER2_type -2706 332 92 2369 96 0 7 chr11 73875624 73875927 -76907626 + AluSx SINE Alu 1 301 -11 1537 158 11 7 chr11 73875927 73875965 -76907588 - MER7A DNA MER2_type -2946 92 56 2344 68 13 29 chr11 73875969 73876280 -76907273 - AluY SINE Alu 0 311 6 1257 143 16 0 chr11 73876503 73876685 -76906868 + AluJb SINE Alu 104 288 -24 2207 90 10 3 chr11 73876692 73876981 -76906572 + AluSq SINE Alu 1 291 -22 420 178 0 0 chr11 73877158 73877231 -76906322 - tRNA-Ala-GCA tRNA tRNA -2 74 2 27 0 0 0 chr11 73877288 73877315 -76906238 + GC_rich Low_complexity Low_complexity 1 27 0 684 158 0 66 chr11 73878013 73878165 -76905388 - FLAM_C SINE Alu 0 143 2 1781 168 11 3 chr11 73878295 73878580 -76904973 - AluJb SINE Alu -12 300 14 880 271 162 76 chr11 73878609 73879028 -76904525 - HAL1 LINE L1 0 2507 2125 2533 61 3 0 chr11 73879028 73879323 -76904230 - AluSg SINE Alu -14 296 1 880 271 162 76 chr11 73879323 73879422 -76904131 - HAL1 LINE L1 -382 2125 2036 342 0 0 0 chr11 73879422 73879460 -76904093 + (TG)n Simple_repeat Simple_repeat 2 39 0 2246 109 0 0 chr11 73879460 73879745 -76903808 - AluSx SINE Alu -27 285 1 270 0 0 0 chr11 73879745 73879775 -76903778 + (TG)n Simple_repeat Simple_repeat 2 31 0 880 271 162 76 chr11 73879775 73880125 -76903428 - HAL1 LINE L1 -470 2037 1561 755 182 29 24 chr11 73880125 73880295 -76903258 - MLT1B LTR MaLR 0 390 220 7474 154 59 70 chr11 73880308 73882024 -76901529 + Ricksha_c DNA DNA 9 1704 -342 1375 189 25 36 chr11 73882047 73882327 -76901226 - AluJo SINE Alu -29 283 7 1456 148 3 74 chr11 73882332 73882552 -76901001 + Ricksha_c DNA DNA 1689 1874 -1377 2408 97 0 0 chr11 73882552 73882851 -76900702 - AluSx SINE Alu -13 299 1 1456 148 3 74 chr11 73882851 73882995 -76900558 + Ricksha_c DNA DNA 1874 2027 -16 410 123 0 0 chr11 73883559 73883616 -76899937 + Ricksha DNA DNA 2796 2852 -2 474 196 163 45 chr11 73883618 73883805 -76899748 - MLT1B LTR MaLR -223 167 8 449 175 79 0 chr11 73883849 73883963 -76899590 - L1MB3 LINE L1 -1 6182 6060 706 137 44 127 chr11 73883965 73884170 -76899383 - L1MB3 LINE L1 -214 5969 5782 1622 148 53 59 chr11 73884170 73884527 -76899026 + MER46B DNA MER2_type 1 230 -6 1772 179 13 37 chr11 73884528 73884903 -76898650 - L1MB3 LINE L1 -383 5788 5423 307 305 48 38 chr11 73885011 73885116 -76898437 - HAL1 LINE L1 -1185 1322 1217 422 194 62 62 chr11 73885141 73885301 -76898252 - HAL1 LINE L1 -1551 956 797 2205 249 89 12 chr11 73885321 73885623 -76897930 + L1MC4 LINE L1 6704 6981 -1061 2204 127 0 0 chr11 73885623 73885922 -76897631 + AluSx SINE Alu 1 299 -13 2205 249 89 12 chr11 73885922 73886452 -76897101 + L1MC4 LINE L1 6981 7666 -376 30 0 0 0 chr11 73886593 73886623 -76896930 + AT_rich Low_complexity Low_complexity 1 30 0 183 42 0 0 chr11 73888731 73888755 -76894798 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2143 117 0 0 chr11 73888757 73889040 -76894513 - AluSx SINE Alu -29 283 1 4917 201 128 18 chr11 73889601 73890847 -76892706 - Cheshire DNA MER1_type 0 2420 1038 231 290 165 30 chr11 73890847 73891047 -76892506 - HAL1 LINE L1 -38 2469 2243 455 286 160 18 chr11 73891100 73891432 -76892121 - HAL1 LINE L1 -495 2012 1634 316 226 65 0 chr11 73891739 73891801 -76891752 - HAL1 LINE L1 -1261 1246 1181 475 304 221 48 chr11 73892037 73892767 -76890786 - L3 LINE CR1 -42 1535 680 366 309 109 52 chr11 73893032 73893262 -76890291 + MIR SINE MIR 20 262 0 1607 161 55 31 chr11 73894222 73894514 -76889039 - AluJb SINE Alu -13 299 1 2212 112 0 0 chr11 73897198 73897484 -76886069 - AluSg SINE Alu -24 286 1 685 206 258 11 chr11 73897901 73898110 -76885443 + MER33 DNA MER1_type 5 306 -57 207 0 0 0 chr11 73898243 73898266 -76885287 + (A)n Simple_repeat Simple_repeat 1 23 0 623 208 100 0 chr11 73898825 73898955 -76884598 - MER58C DNA MER1_type -16 199 57 21 0 0 0 chr11 73899288 73899309 -76884244 + AT_rich Low_complexity Low_complexity 1 21 0 1862 131 20 36 chr11 73900218 73900524 -76883029 + AluSx SINE Alu 1 301 -11 1197 175 113 45 chr11 73900815 73901106 -76882447 - AluJo SINE Alu -1 311 1 1700 84 0 0 chr11 73903375 73903589 -76879964 + AluSq SINE Alu 1 214 -99 288 274 79 44 chr11 73903708 73903859 -76879694 + MIR SINE MIR 2 153 -62 1166 277 214 38 chr11 73904313 73904727 -76878826 - L2 LINE L2 -176 3137 2797 8808 64 14 4 chr11 73904727 73905784 -76877769 - MER11C LTR ERVK -2 1069 2 1166 277 214 38 chr11 73905784 73906901 -76876652 - L2 LINE L2 -516 2797 1333 189 0 0 0 chr11 73906929 73906950 -76876603 + (T)n Simple_repeat Simple_repeat 1 21 0 2077 150 0 0 chr11 73907076 73907382 -76876171 - AluSx SINE Alu -6 306 1 738 252 110 18 chr11 73907747 73907965 -76875588 - MIR SINE MIR -12 250 13 756 197 51 0 chr11 73908858 73908995 -76874558 - FRAM SINE Alu -10 166 23 1206 181 0 11 chr11 73910355 73910543 -76873010 + MER5A DNA MER1_type 4 189 0 291 323 49 30 chr11 73911385 73911549 -76872004 - MLT1L LTR MaLR -1 614 448 208 281 174 8 chr11 73911864 73911985 -76871568 + MIR SINE MIR 5 145 -117 2310 85 0 3 chr11 73913660 73913953 -76869600 - AluSx SINE Alu -20 292 1 308 262 167 0 chr11 73914816 73914900 -76868653 + MER5A DNA MER1_type 9 106 -83 2235 96 3 3 chr11 73916247 73916549 -76867004 - AluSg1 SINE Alu -7 302 1 300 254 14 0 chr11 73916883 73916954 -76866599 + MER116 DNA Mariner 9 80 0 2419 82 3 0 chr11 73918051 73918356 -76865197 - AluSp SINE Alu -7 306 1 1022 134 204 30 chr11 73918430 73918631 -76864922 - MER46A DNA MER2_type 0 236 1 21 0 0 0 chr11 73918843 73918864 -76864689 + AT_rich Low_complexity Low_complexity 1 21 0 442 151 14 0 chr11 73920064 73920137 -76863416 - MER116 DNA Mariner 0 80 7 240 208 38 0 chr11 73920140 73920193 -76863360 - MER33 DNA MER1_type 0 324 270 * 531 210 35 16 chr11 73920189 73920313 -76863240 - MER33 DNA MER1_type -197 166 1 189 74 0 0 chr11 73921299 73921326 -76862227 + (A)n Simple_repeat Simple_repeat 1 27 0 2293 104 0 3 chr11 73922271 73922580 -76860973 - AluSg SINE Alu -1 309 2 260 216 34 57 chr11 73923691 73923779 -76859774 - MLT1J1 LTR MaLR -5 441 356 1730 280 61 20 chr11 73924634 73925323 -76858230 + L1ME LINE L1 2975 3691 -2455 989 162 22 38 chr11 73925329 73925482 -76858071 + MER2 DNA MER2_type 4 155 -190 2294 55 45 10 chr11 73925482 73925774 -76857779 - AluY SINE Alu -9 302 1 989 162 22 38 chr11 73925774 73925805 -76857748 + MER2 DNA MER2_type 155 185 -160 707 168 30 38 chr11 73925851 73925982 -76857571 - FLAM_A SINE Alu -3 130 1 386 270 0 0 chr11 73925982 73926056 -76857497 + MER2 DNA MER2_type 272 345 0 507 272 107 21 chr11 73926082 73926325 -76857228 + L1ME LINE L1 3723 3986 -2160 862 224 31 16 chr11 73926353 73926545 -76857008 - AluJo SINE Alu -13 299 105 3314 248 71 19 chr11 73926554 73927607 -76855946 + L1ME LINE L1 4170 5277 -869 641 143 60 14 chr11 73927613 73927782 -76855771 + AluJo SINE Alu 1 211 -101 885 252 195 33 chr11 73927789 73928178 -76855375 - MLT1D LTR MaLR -52 453 2 628 239 67 9 chr11 73928179 73928361 -76855192 + L1ME LINE L1 5465 5649 -517 261 83 0 0 chr11 73930825 73930861 -76852692 + (CTG)n Simple_repeat Simple_repeat 2 37 0 265 44 0 44 chr11 73930890 73930935 -76852618 + (TCC)n Simple_repeat Simple_repeat 3 45 0 2009 161 6 3 chr11 73930937 73931248 -76852305 - AluJb SINE Alu 0 312 1 197 319 42 42 chr11 73932584 73932656 -76850897 - MIR SINE MIR -177 85 14 232 319 53 44 chr11 73933237 73933350 -76850203 + L2 LINE L2 3158 3271 -1 2258 66 31 0 chr11 73933360 73933647 -76849906 - AluY SINE Alu -15 296 1 1779 173 40 3 chr11 73933868 73934192 -76849361 - MER44D DNA MER2_type -3 606 1 593 229 105 0 chr11 73936369 73936522 -76847031 - L1ME1 LINE L1 -5 6161 5993 1623 179 33 0 chr11 73937155 73937428 -76846125 + AluJo SINE Alu 1 282 -30 1830 191 90 96 chr11 73937633 73937826 -76845727 + L1MD1 LINE L1 4472 4665 -1481 2320 88 3 0 chr11 73937826 73938121 -76845432 - AluY SINE Alu -15 296 1 1830 191 90 96 chr11 73938121 73938440 -76845113 + L1MD1 LINE L1 4665 4982 -1164 717 147 0 133 chr11 73938440 73938590 -76844963 - FLAM_A SINE Alu -3 130 1 1830 191 90 96 chr11 73938590 73938734 -76844819 + L1MD1 LINE L1 4982 5125 -1021 1331 140 0 0 chr11 73938758 73938958 -76844595 + AluSg/x SINE Alu 111 310 0 2921 171 16 97 chr11 73938959 73939311 -76844242 + L1MD1 LINE L1 5272 5651 -591 1644 127 31 0 chr11 73939311 73939571 -76843982 + L1MA1 LINE L1 6031 6298 -4 2921 171 16 97 chr11 73939571 73939856 -76843697 + L1MD1 LINE L1 5651 5957 -285 387 228 297 0 chr11 73939856 73939957 -76843596 - FLAM_C SINE Alu -2 131 1 2921 171 16 97 chr11 73939957 73940043 -76843510 + L1MD1 LINE L1 5957 6048 -194 1771 162 0 36 chr11 73940043 73940346 -76843207 + AluJo SINE Alu 1 292 -20 2921 171 16 97 chr11 73940346 73940644 -76842909 + L1MD1 LINE L1 6048 6189 -53 306 73 0 0 chr11 73940644 73940685 -76842868 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 2307 93 10 13 chr11 73940685 73940997 -76842556 - AluY SINE Alu 0 311 1 311 92 0 172 chr11 73940997 73941027 -76842526 + L1MD2 LINE L1 6288 6321 -38 2235 81 0 0 chr11 73941027 73941349 -76842204 + AluY SINE Alu 1 322 0 311 92 0 172 chr11 73941349 73941404 -76842149 + L1MD2 LINE L1 6321 6359 0 6893 197 43 28 chr11 73941423 73942497 -76841056 + L1MC1 LINE L1 3522 4579 -1754 1904 155 0 10 chr11 73942497 73942818 -76840735 + AluJo SINE Alu 1 318 0 6893 197 43 28 chr11 73942818 73943208 -76840345 + L1MC1 LINE L1 4579 4962 -1371 2077 108 0 17 chr11 73943208 73943521 -76840032 + AluSx SINE Alu 1 308 0 6893 197 43 28 chr11 73943521 73944819 -76838734 + L1MC1 LINE L1 4962 6333 0 1428 176 62 26 chr11 73944833 73945105 -76838448 + AluJo SINE Alu 1 282 -30 2592 59 0 0 chr11 73946333 73946636 -76836917 + AluSx SINE Alu 1 303 -9 1069 233 41 0 chr11 73947007 73947277 -76836276 + MER33 DNA MER1_type 44 324 0 1742 165 30 3 chr11 73947666 73947963 -76835590 - AluJo SINE Alu -7 305 1 1370 140 17 13 chr11 73948407 73948643 -76834910 - Tigger3(Golem) DNA MER2_type -1 3028 2792 441 154 0 0 chr11 73948757 73948822 -76834731 - Tigger3(Golem) DNA MER2_type -2924 105 41 363 305 94 8 chr11 73949500 73949628 -76833925 + MIR3 SINE MIR 32 170 -38 883 164 9 2 chr11 73949803 73950086 -76833467 + AluJb SINE Alu 2 332 0 340 207 110 0 chr11 73950089 73950171 -76833382 - MER5A DNA MER1_type -71 118 28 385 191 136 45 chr11 73950656 73950766 -76832787 - MER45 DNA AcHobo -58 120 1 641 191 228 39 chr11 73951197 73951460 -76832093 - MER33 DNA MER1_type -5 358 5 2221 121 3 0 chr11 73951877 73952184 -76831369 + AluSg SINE Alu 1 308 -2 210 238 143 38 chr11 73953992 73954097 -76829456 - MIR SINE MIR -33 229 114 2410 81 3 3 chr11 73954198 73954505 -76829048 + AluSx SINE Alu 1 307 -5 2209 106 3 3 chr11 73955009 73955301 -76828252 + AluSx SINE Alu 1 292 -20 1016 154 0 0 chr11 73955301 73955450 -76828103 + AluJb SINE Alu 137 285 -27 922 248 39 0 chr11 73956037 73956319 -76827234 - L1M4 LINE L1 -3105 3041 2749 2332 82 13 20 chr11 73956351 73956657 -76826896 - AluSg SINE Alu -1 309 6 1262 137 16 0 chr11 73956880 73957062 -76826491 + AluJb SINE Alu 104 288 -24 2188 90 10 3 chr11 73957069 73957358 -76826195 + AluSq SINE Alu 1 291 -22 449 178 0 0 chr11 73957535 73957608 -76825945 - tRNA-Ala-GCA tRNA tRNA -2 74 2 27 0 0 0 chr11 73957665 73957692 -76825861 + GC_rich Low_complexity Low_complexity 1 27 0 1716 155 24 17 chr11 73958166 73958463 -76825090 - AluJb SINE Alu -12 300 2 1086 220 101 55 chr11 73958463 73958983 -76824570 - MLT1E3 LTR MaLR -56 568 2 369 108 4 13 chr11 73959058 73959133 -76824420 + AluJb SINE Alu 79 131 -171 2270 119 0 0 chr11 73959140 73959434 -76824119 + AluSx SINE Alu 1 294 -18 311 0 26 0 chr11 73959686 73959725 -76823828 + (TTTTA)n Simple_repeat Simple_repeat 3 42 0 2156 109 0 7 chr11 73959726 73960036 -76823517 - AluSq SINE Alu 0 309 2 1012 257 59 46 chr11 73960061 73960516 -76823037 - MLT1C LTR MaLR 0 467 7 1440 188 7 62 chr11 73960541 73960850 -76822703 + AluJb SINE Alu 1 292 -20 1016 154 0 0 chr11 73960850 73960999 -76822554 + AluJb SINE Alu 137 285 -27 922 248 39 0 chr11 73961586 73961868 -76821685 - L1M4 LINE L1 -3105 3041 2749 2433 89 0 19 chr11 73961900 73962215 -76821338 - AluSg SINE Alu -1 309 1 1024 189 35 27 chr11 73962218 73962478 -76821075 - L1M4 LINE L1 -3396 2750 2489 582 284 59 6 chr11 73962544 73962713 -76820840 + MIR SINE MIR 14 191 -71 1360 130 10 5 chr11 73963087 73963294 -76820259 + AluSg/x SINE Alu 86 293 -19 465 84 0 0 chr11 73963294 73963365 -76820188 + L1M1 LINE L1 3605 3675 -3890 1781 153 9 56 chr11 73963374 73963718 -76819835 + AluSx SINE Alu 1 312 0 1155 181 8 59 chr11 73963790 73964027 -76819526 + AluJb SINE Alu 69 293 -19 1594 168 35 62 chr11 73964028 73964340 -76819213 + L1 LINE L1 4555 4853 -2712 2045 88 62 7 chr11 73964340 73964614 -76818939 + AluSx SINE Alu 1 289 -23 1594 168 35 62 chr11 73964614 73964735 -76818818 + L1 LINE L1 4853 4976 -2589 2179 82 17 10 chr11 73964737 73964899 -76818654 - AluY SINE Alu -18 293 127 2462 62 3 7 chr11 73964899 73965206 -76818347 - AluY SINE Alu -5 306 1 2179 82 17 10 chr11 73965206 73965334 -76818219 - AluY SINE Alu -184 127 1 2337 108 3 0 chr11 73966060 73966366 -76817187 - AluSx SINE Alu -4 308 2 1162 211 14 0 chr11 73967359 73967577 -76815976 - MER58A DNA MER1_type -3 221 1 229 190 190 0 chr11 73967589 73967647 -76815906 - AluSc SINE Alu 0 299 231 1494 170 73 35 chr11 73967685 73967973 -76815580 - AluJo SINE Alu -13 299 1 1530 234 144 27 chr11 73968323 73969290 -76814263 - L2 LINE L2 0 3313 2229 2303 72 7 14 chr11 73969294 73969587 -76813966 + AluY SINE Alu 1 291 -20 1016 154 0 0 chr11 73969587 73969736 -76813817 + AluJb SINE Alu 137 285 -27 1649 203 38 78 chr11 73970323 73970636 -76812917 - L1M4 LINE L1 -3105 3041 2760 2433 89 0 19 chr11 73970636 73970951 -76812602 - AluSg SINE Alu -1 309 1 1649 203 38 78 chr11 73970951 73971213 -76812340 - L1M4 LINE L1 -3386 2760 2489 582 284 59 6 chr11 73971279 73971448 -76812105 + MIR SINE MIR 14 191 -71 192 163 0 0 chr11 73971813 73971856 -76811697 + A-rich Low_complexity Low_complexity 1 43 0 2267 98 0 25 chr11 73972853 73973170 -76810383 + AluSg SINE Alu 1 309 -1 25 31 0 0 chr11 74023322 74023354 -76760199 + AT_rich Low_complexity Low_complexity 1 32 0 1548 150 77 47 chr11 74023532 74023832 -76759721 + AluJo SINE Alu 1 309 -3 2226 135 3 0 chr11 74023895 74024206 -76759347 + AluSx SINE Alu 1 312 0 1554 167 7 23 chr11 74024350 74024649 -76758904 + Tigger1 DNA MER2_type 2 295 -2123 269 245 0 0 chr11 74024650 74024703 -76758850 + Tigger1 DNA MER2_type 243 295 -2123 1711 200 90 83 chr11 74024803 74025038 -76758515 + L1MD1 LINE L1 4421 4653 -1493 2348 88 3 0 chr11 74025038 74025332 -76758221 - AluY SINE Alu -16 295 1 1711 200 90 83 chr11 74025332 74025651 -76757902 + L1MD1 LINE L1 4653 4984 -1162 693 160 0 120 chr11 74025651 74025801 -76757752 - FLAM_A SINE Alu -1 132 1 1711 200 90 83 chr11 74025801 74025945 -76757608 + L1MD1 LINE L1 4984 5125 -1021 1366 140 0 0 chr11 74025969 74026169 -76757384 + AluSg/x SINE Alu 111 310 0 2361 180 17 102 chr11 74026170 74026521 -76757032 + L1MD1 LINE L1 5272 5651 -591 1557 127 31 0 chr11 74026521 74026781 -76756772 + L1MA1 LINE L1 6031 6298 -4 2361 180 17 102 chr11 74026781 74027066 -76756487 + L1MD1 LINE L1 5651 5959 -283 370 228 297 0 chr11 74027066 74027167 -76756386 - FLAM_C SINE Alu -2 131 1 2361 180 17 102 chr11 74027167 74027253 -76756300 + L1MD1 LINE L1 5959 5871 -371 1807 162 0 36 chr11 74027253 74027556 -76755997 + AluJo SINE Alu 1 292 -20 2361 180 17 102 chr11 74027556 74027806 -76755747 + L1MD1 LINE L1 5870 6140 -102 244 290 159 0 chr11 74030008 74030115 -76753438 + L2 LINE L2 2635 2758 -556 2163 143 0 0 chr11 74030850 74031158 -76752395 + AluSx SINE Alu 1 308 -4 365 205 0 33 chr11 74031803 74031925 -76751628 + CT-rich Low_complexity Low_complexity 3 120 0 1812 165 0 0 chr11 74031927 74032200 -76751353 - AluSx SINE Alu -39 273 1 283 146 16 4 chr11 74032889 74032960 -76750593 + L1MB4 LINE L1 6112 6182 -1 1033 284 88 72 chr11 74033145 74034915 -76748638 + L1ME LINE L1 2210 4006 -2140 662 339 49 13 chr11 74034916 74035303 -76748250 + MLT1J LTR MaLR 2 402 -109 312 301 75 50 chr11 74035354 74035633 -76747920 + L1ME LINE L1 4000 4285 -1861 377 264 28 7 chr11 74035733 74035877 -76747676 + L1ME LINE L1 4901 5047 -1099 889 167 0 0 chr11 74036145 74036283 -76747270 - FLAM_C SINE Alu -5 138 1 309 274 159 10 chr11 74036341 74036542 -76747011 + L1MEd LINE L1 54 284 -5835 191 262 0 0 chr11 74036592 74036634 -76746919 - MIR SINE MIR -31 231 190 271 264 25 50 chr11 74036834 74036955 -76746598 + L1MEd LINE L1 550 667 -5452 2072 156 50 15 chr11 74037055 74037458 -76746095 - LTR8A LTR ERV1 -308 419 3 218 264 0 14 chr11 74037815 74037887 -76745666 + (CA)n Simple_repeat Simple_repeat 1 71 0 2166 112 0 3 chr11 74038066 74038352 -76745201 + AluSx SINE Alu 11 295 -17 182 263 101 61 chr11 74038756 74038855 -76744698 - MIR SINE MIR -70 138 36 508 259 181 24 chr11 74038855 74039230 -76744323 - LTR16A1 LTR ERVL 0 457 24 2171 92 7 36 chr11 74040061 74040366 -76743187 - AluSx SINE Alu -16 296 1 770 207 38 33 chr11 74040369 74040582 -76742971 - L1MB3 LINE L1 -278 5905 5692 240 203 76 13 chr11 74040751 74040830 -76742723 + L1ME LINE L1 5590 5673 -448 281 324 6 23 chr11 74041054 74041227 -76742326 + GA-rich Low_complexity Low_complexity 3 172 0 * 451 263 29 0 chr11 74041143 74041314 -76742239 + G-rich Low_complexity Low_complexity 2 177 0 271 251 0 68 chr11 74041428 74041673 -76741880 + GA-rich Low_complexity Low_complexity 1 228 0 2336 79 0 3 chr11 74142281 74142585 -76640968 - AluY SINE Alu -6 305 3 2288 91 7 0 chr11 74142609 74142907 -76640646 - AluSx SINE Alu -12 300 1 381 22 0 0 chr11 74142978 74143024 -76640529 + (TG)n Simple_repeat Simple_repeat 2 47 0 236 377 57 0 chr11 74144343 74144465 -76639088 + MIR3 SINE MIR 15 143 -65 209 350 146 0 chr11 74145084 74145187 -76638366 + L2 LINE L2 3193 3310 -3 320 226 183 9 chr11 74145217 74145287 -76638266 + MLT1K LTR MaLR 451 508 -80 351 0 0 0 chr11 74145287 74145326 -76638227 + (TG)n Simple_repeat Simple_repeat 2 40 0 320 226 183 9 chr11 74145326 74145370 -76638183 + MLT1K LTR MaLR 508 585 -3 954 293 130 11 chr11 74145577 74145953 -76637600 - MLT1E LTR MaLR -172 421 1 2130 158 18 38 chr11 74146158 74146556 -76636997 + MLT1B LTR MaLR 1 390 0 2102 120 0 0 chr11 74146823 74147136 -76636417 - AluSx SINE Alu 0 313 1 522 343 56 26 chr11 74147242 74147545 -76636008 + MLT1K LTR MaLR 212 523 -65 401 305 9 77 chr11 74147661 74147894 -76635659 + L1ME1 LINE L1 5942 6158 -8 182 278 233 0 chr11 74149090 74149180 -76634373 - MIR SINE MIR -85 177 67 207 0 0 0 chr11 74152510 74152533 -76631020 + (A)n Simple_repeat Simple_repeat 1 23 0 271 284 9 26 chr11 74152645 74152761 -76630792 + L1ME4a LINE L1 6007 6120 -1 788 246 218 25 chr11 74153501 74153895 -76629658 - MLT1D LTR MaLR -35 470 1 195 273 30 45 chr11 74153929 74153995 -76629558 - L2 LINE L2 0 3313 3249 1907 100 0 71 chr11 74153995 74154329 -76629224 - AluSg SINE Alu 0 312 1 1357 134 41 24 chr11 74154332 74154701 -76628852 - LTR46 LTR ERV1 0 460 1 221 276 17 0 chr11 74154865 74154923 -76628630 - L2 LINE L2 -13 3300 3242 300 274 74 47 chr11 74155232 74155422 -76628131 + L2 LINE L2 1488 1682 -1632 2286 84 3 0 chr11 74155645 74155942 -76627611 + AluSx SINE Alu 1 298 -14 201 353 52 9 chr11 74156016 74156132 -76627421 + L2 LINE L2 3138 3258 -14 266 204 22 44 chr11 74156788 74156969 -76626584 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 320 352 104 64 chr11 74157092 74157640 -76625913 + L1MEd LINE L1 48 617 -5502 2032 122 3 3 chr11 74157748 74158044 -76625509 + AluSx SINE Alu 1 296 -16 1146 298 104 49 chr11 74158247 74159543 -76624010 + L1M4 LINE L1 2692 4074 -2072 2216 113 0 0 chr11 74159543 74159853 -76623700 + AluSg SINE Alu 1 310 0 1146 298 104 49 chr11 74159853 74159965 -76623588 + L1M4 LINE L1 4074 4178 -1968 2464 288 83 33 chr11 74160082 74161340 -76622213 + L1MEc LINE L1 10 1348 -5048 1971 117 4 0 chr11 74161340 74161658 -76621895 + AluY SINE Alu 1 319 0 2464 288 83 33 chr11 74161658 74161787 -76621766 + L1MEc LINE L1 1348 1469 -4927 2035 148 0 0 chr11 74161788 74162098 -76621455 + AluJb SINE Alu 1 310 -2 858 207 37 1 chr11 74162311 74162532 -76621021 - L1M3 LINE L1 -376 5807 5581 212 394 8 8 chr11 74162550 74162682 -76620871 - MIR SINE MIR -35 227 96 1754 88 4 0 chr11 74162688 74162916 -76620637 - AluSx SINE Alu -83 229 1 542 55 14 14 chr11 74162916 74162982 -76620571 - AluSq/x SINE Alu -175 137 69 1332 135 5 0 chr11 74162982 74163182 -76620371 - AluSx SINE Alu -109 203 3 2249 103 0 0 chr11 74163189 74163489 -76620064 - AluSc SINE Alu -9 300 1 367 296 11 57 chr11 74163500 74163676 -76619877 - HAL1 LINE L1 -1677 830 663 1341 192 30 59 chr11 74163676 74163810 -76619743 + MLT1D LTR MaLR 1 137 -368 1528 157 80 3 chr11 74163810 74164096 -76619457 + AluJo SINE Alu 1 308 -4 1341 192 30 59 chr11 74164096 74164300 -76619253 + MLT1D LTR MaLR 137 329 -176 2370 93 0 0 chr11 74164302 74164614 -76618939 + AluSx SINE Alu 1 312 0 975 225 126 30 chr11 74164739 74165041 -76618512 + MLT1A1 LTR MaLR 32 362 -3 331 356 57 10 chr11 74165970 74166164 -76617389 - MIR SINE MIR -35 227 25 716 186 155 0 chr11 74166492 74166653 -76616900 - MLT1D LTR MaLR -12 493 308 228 67 0 0 chr11 74166654 74166684 -76616869 + (T)n Simple_repeat Simple_repeat 1 30 0 2519 58 3 0 chr11 74167966 74168276 -76615277 - AluY SINE Alu 0 311 1 454 280 28 64 chr11 74168280 74168364 -76615189 - L2 LINE L2 -237 3076 2991 2012 121 10 3 chr11 74168364 74168661 -76614892 + AluSx SINE Alu 1 299 -13 454 280 28 64 chr11 74168661 74168826 -76614727 - L2 LINE L2 -322 2991 2836 189 333 15 0 chr11 74169029 74169095 -76614458 - L2 LINE L2 -9 3263 3197 236 267 267 4 chr11 74170435 74170693 -76612860 + L2 LINE L2 293 618 -2696 2255 93 0 7 chr11 74170816 74171117 -76612436 - AluSx SINE Alu -13 299 1 237 235 0 15 chr11 74171118 74171186 -76612367 + MLT1D LTR MaLR 401 467 0 956 224 83 33 chr11 74171204 74171524 -76612029 + MLT1D LTR MaLR 70 445 -60 2276 90 13 0 chr11 74171524 74171825 -76611728 + AluSx SINE Alu 1 305 -7 956 224 83 33 chr11 74171825 74171888 -76611665 + MLT1D LTR MaLR 445 503 -2 2145 138 103 30 chr11 74172089 74172444 -76611109 + MSTA LTR MaLR 1 390 -38 1660 166 0 44 chr11 74172444 74172763 -76610790 - AluJb SINE Alu -3 309 5 2145 138 103 30 chr11 74172763 74172806 -76610747 + MSTA LTR MaLR 390 428 0 555 279 70 78 chr11 74172934 74173278 -76610275 + MLT1K LTR MaLR 137 477 -111 1626 159 17 27 chr11 74173784 74174014 -76609539 - MLT1B LTR MaLR -8 382 154 2050 122 99 12 chr11 74174014 74174359 -76609194 + THE1C LTR MaLR 1 375 0 1626 159 17 27 chr11 74174359 74174423 -76609130 - MLT1B LTR MaLR -236 154 91 1443 174 83 72 chr11 74174547 74174627 -76608926 - MLT1A1 LTR MaLR 0 365 287 1716 138 8 0 chr11 74174627 74174888 -76608665 + AluJo SINE Alu 50 312 0 1443 174 83 72 chr11 74174888 74175168 -76608385 - MLT1A1 LTR MaLR -78 287 1 1176 285 24 71 chr11 74175972 74176480 -76607073 + MLT1K LTR MaLR 105 588 0 1669 219 40 8 chr11 74176751 74177152 -76606401 - MLT1C LTR MaLR 0 467 54 242 292 22 22 chr11 74178129 74178218 -76605335 + L2 LINE L2 3182 3270 -2 2046 115 0 10 chr11 74178374 74178678 -76604875 + AluSg SINE Alu 1 301 -9 382 271 20 69 chr11 74179121 74179204 -76604349 + L1MC5 LINE L1 7661 7746 -215 2074 117 3 3 chr11 74179204 74179503 -76604050 + AluSx SINE Alu 1 299 -13 382 271 20 69 chr11 74179503 74179666 -76603887 + L1MC5 LINE L1 7746 7895 -66 834 201 0 6 chr11 74179686 74179845 -76603708 + AluJb SINE Alu 128 285 -27 228 67 0 0 chr11 74179845 74179875 -76603678 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 394 277 136 61 chr11 74180782 74181158 -76602395 + L1ME LINE L1 5408 5811 -310 806 78 60 0 chr11 74181995 74182111 -76601442 - FLAM_A SINE Alu -7 126 4 272 233 17 0 chr11 74182312 74182372 -76601181 - MIR SINE MIR -63 145 85 33 56 0 0 chr11 74182431 74182485 -76601068 + GC_rich Low_complexity Low_complexity 1 54 0 192 77 0 0 chr11 74182613 74182639 -76600914 + (CCG)n Simple_repeat Simple_repeat 1 26 0 28 61 0 0 chr11 74182699 74182748 -76600805 + GC_rich Low_complexity Low_complexity 1 49 0 3290 163 110 32 chr11 74183109 74183169 -76600384 - MER69 DNA AcHobo -16 2510 2456 2069 114 0 10 chr11 74183169 74183467 -76600086 + AluJb SINE Alu 1 295 -17 3290 163 110 32 chr11 74183467 74184300 -76599253 - MER69 DNA AcHobo -70 2456 1548 187 339 76 23 chr11 74184764 74184935 -76598618 + L2 LINE L2 2930 3109 -163 895 194 0 11 chr11 74184952 74185132 -76598421 - AluJo SINE Alu -14 298 121 1022 85 0 0 chr11 74185253 74185382 -76598171 + AluSq/x SINE Alu 1 129 -184 23 0 0 0 chr11 74185400 74185423 -76598130 + AT_rich Low_complexity Low_complexity 1 23 0 2143 123 3 0 chr11 74185527 74185837 -76597716 + AluSx SINE Alu 1 311 -1 3382 159 19 88 chr11 74185983 74186723 -76596830 - LTR8 LTR ERV1 -2 689 1 217 333 0 0 chr11 74186975 74187041 -76596512 + L2 LINE L2 3248 3313 0 2387 89 3 0 chr11 74187305 74187631 -76595922 - pTR5 LTR ERV1 -2046 392 66 302 286 10 0 chr11 74187631 74187729 -76595824 - LTR30 LTR ERV1 -80 642 544 615 123 246 0 chr11 74187729 74187851 -76595702 - pTR5 LTR ERV1 -413 2025 1874 * 1959 168 38 28 chr11 74187840 74188238 -76595315 - pTR5 LTR ERV1 -1292 1146 745 777 258 213 22 chr11 74188238 74188417 -76595136 + MLT1J2 LTR MaLR 59 202 -248 2454 147 35 97 chr11 74188417 74188694 -76594859 + MER66B LTR ERV1 1 294 -192 1656 187 7 0 chr11 74188694 74188983 -76594570 + AluJb SINE Alu 1 291 -21 2454 147 35 97 chr11 74188983 74189133 -76594420 + MER66B LTR ERV1 294 393 -93 2311 63 3 17 chr11 74189133 74189434 -76594119 - AluSp SINE Alu -15 298 2 2454 147 35 97 chr11 74189434 74189523 -76594030 + MER66B LTR ERV1 393 486 0 777 258 213 22 chr11 74189523 74189657 -76593896 + MLT1J2 LTR MaLR 202 432 -18 3376 233 113 23 chr11 74190536 74191617 -76591936 - MER69B DNA AcHobo -8 1218 41 342 226 40 32 chr11 74194617 74194741 -76588812 - L1M4 LINE L1 -2119 4027 3903 1434 189 53 3 chr11 74194866 74195151 -76588402 + AluJo SINE Alu 1 299 -13 1017 332 60 46 chr11 74195416 74196799 -76586754 - L1ME3 LINE L1 -279 5883 4470 2062 108 0 20 chr11 74196799 74197105 -76586448 - AluSq SINE Alu -13 300 1 1017 332 60 46 chr11 74197105 74197201 -76586352 - L1ME3 LINE L1 -1692 4470 4377 1854 128 31 3 chr11 74197218 74197506 -76586047 - AluSc SINE Alu -9 300 5 353 313 75 26 chr11 74197674 74197901 -76585652 - L2 LINE L2 -590 2724 2487 231 211 0 0 chr11 74197905 74197957 -76585596 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 1547 187 31 43 chr11 74198012 74198283 -76585270 - L1MCa LINE L1 -631 5823 5550 2122 105 14 0 chr11 74198283 74198577 -76584976 - AluSx SINE Alu -14 298 1 1547 187 31 43 chr11 74198577 74199062 -76584491 - L1MCa LINE L1 -904 5550 1509 1427 151 4 17 chr11 74199245 74199484 -76584069 + AluJb SINE Alu 1 236 -76 1272 227 17 77 chr11 74199516 74199921 -76583632 - LTR49-int LTR ERV1 -3689 2642 2262 448 218 0 35 chr11 74199958 74200128 -76583425 + CT-rich Low_complexity Low_complexity 1 164 0 2056 142 0 3 chr11 74200128 74200439 -76583114 - AluSx SINE Alu -2 310 1 2239 174 12 17 chr11 74200439 74200928 -76582625 - LTR49-int LTR ERV1 -4048 2283 1760 2296 82 3 10 chr11 74200928 74201234 -76582319 + AluSx SINE Alu 9 312 0 2354 87 3 0 chr11 74201276 74201588 -76581965 - AluSp SINE Alu 0 313 1 2296 165 5 37 chr11 74201591 74201963 -76581590 - L1MB3 LINE L1 -153 6030 5678 2148 102 3 3 chr11 74201963 74202258 -76581295 + AluSq SINE Alu 1 295 -18 2296 165 5 37 chr11 74202258 74202346 -76581207 - L1MB3 LINE L1 -505 5678 5589 211 105 0 0 chr11 74202381 74202419 -76581134 + (TTTA)n Simple_repeat Simple_repeat 3 168 0 2088 106 0 0 chr11 74202419 74202701 -76580852 - AluSx SINE Alu -1 319 1 446 244 199 20 chr11 74202770 74202971 -76580582 - MIR SINE MIR -3 259 23 304 360 0 0 chr11 74205222 74205394 -76578159 + G-rich Low_complexity Low_complexity 3 174 0 518 95 4 9 chr11 74206560 74206824 -76576729 + AluY SINE Alu 1 310 0 2033 107 10 13 chr11 74207050 74207350 -76576203 - AluSx SINE Alu -13 299 1 2233 105 3 0 chr11 74207751 74208056 -76575497 + AluSp SINE Alu 1 306 -7 2099 121 0 3 chr11 74208136 74208442 -76575111 + AluSx SINE Alu 1 305 -7 1616 155 10 34 chr11 74208450 74208747 -76574806 - AluJb SINE Alu -22 290 1 185 260 52 26 chr11 74211348 74211425 -76572128 + MIR SINE MIR 112 190 -72 2176 106 0 0 chr11 74211565 74211857 -76571696 - AluSx SINE Alu -20 292 1 494 240 16 16 chr11 74212589 74212714 -76570839 - MIR SINE MIR -6 256 132 804 181 0 0 chr11 74213087 74213214 -76570339 + FLAM_A SINE Alu 8 134 -8 1406 224 144 45 chr11 74213675 74214167 -76569386 + MLT1F LTR MaLR 2 542 0 1057 287 101 0 chr11 74214336 74214751 -76568802 + L2 LINE L2 2057 2513 -801 468 197 43 17 chr11 74215100 74215217 -76568336 - L1MC5 LINE L1 -37 7924 7805 3703 122 40 8 chr11 74215250 74215850 -76567703 - L1MC1 LINE L1 0 6333 5715 513 301 42 0 chr11 74216140 74216306 -76567247 + MIR SINE MIR 13 185 -77 434 248 73 82 chr11 74217493 74217556 -76565997 - MIR SINE MIR -49 213 151 2212 87 6 6 chr11 74217556 74217867 -76565686 - AluY SINE Alu 0 311 1 434 248 73 82 chr11 74217867 74218009 -76565544 - MIR SINE MIR -111 151 10 507 288 79 0 chr11 74218077 74218254 -76565299 + MIR SINE MIR 53 243 -19 426 349 101 12 chr11 74218317 74218732 -76564821 - L2 LINE L2 -527 2787 2336 1070 174 65 78 chr11 74219179 74219403 -76564150 + MER33 DNA MER1_type 3 228 -2357 2218 91 13 3 chr11 74219403 74219711 -76563842 - AluSp SINE Alu -2 311 1 1070 174 65 78 chr11 74219711 74219767 -76563786 + MER33 DNA MER1_type 228 281 -2304 1845 143 3 3 chr11 74219767 74220054 -76563499 + AluJb SINE Alu 21 307 -5 1070 174 65 78 chr11 74220054 74220094 -76563459 + MER33 DNA MER1_type 281 320 -4 560 108 0 0 chr11 74220497 74220571 -76562982 - AluSg/x SINE Alu -18 292 219 1535 59 0 0 chr11 74220571 74220758 -76562795 - AluY SINE Alu -124 187 1 2157 89 20 7 chr11 74221612 74221905 -76561648 - AluSx SINE Alu -15 297 1 810 252 46 101 chr11 74221905 74222191 -76561362 + L1MC4 LINE L1 7598 7852 -190 2137 115 13 0 chr11 74222191 74222496 -76561057 - AluSx SINE Alu -3 309 1 810 252 46 101 chr11 74222496 74222677 -76560876 + L1MC4 LINE L1 7852 8041 -1 487 272 74 81 chr11 74222935 74223258 -76560295 - MER102b DNA MER1_type -19 322 2 245 325 73 16 chr11 74224138 74224261 -76559292 + MIR3 SINE MIR 49 178 -30 980 161 45 25 chr11 74225714 74225913 -76557640 + LTR49-int LTR ERV1 3911 4113 -2218 207 0 0 0 chr11 74225923 74225946 -76557607 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 2424 44 0 7 chr11 74225946 74226232 -76557321 - AluY SINE Alu -25 286 1 2630 166 115 10 chr11 74226275 74226496 -76557057 + LTR64 LTR ERVK 1 197 -361 2200 89 7 0 chr11 74226496 74226798 -76556755 + AluSp SINE Alu 1 304 -9 2630 166 115 10 chr11 74226798 74227081 -76556472 + LTR64 LTR ERVK 197 558 0 1304 131 14 36 chr11 74227142 74227364 -76556189 - AluJb SINE Alu -10 302 86 325 272 126 42 chr11 74227433 74227592 -76555961 - L2 LINE L2 0 3313 3134 2131 112 0 6 chr11 74227592 74227904 -76555649 + AluSg SINE Alu 1 310 0 325 272 126 42 chr11 74227904 74227935 -76555618 - L2 LINE L2 -179 3134 3107 417 248 25 131 chr11 74228281 74228357 -76555196 - MER45A DNA AcHobo -1403 178 96 1485 114 33 48 chr11 74228357 74228629 -76554924 + AluJo SINE Alu 44 311 -1 417 248 25 131 chr11 74228629 74228750 -76554803 - MER45A DNA AcHobo -1485 96 2 197 282 20 41 chr11 74228820 74228932 -76554621 + L2 LINE L2 2875 2982 -290 1992 97 7 39 chr11 74229141 74229314 -76554239 - AluSx SINE Alu -13 299 122 307 0 23 23 chr11 74229314 74229358 -76554195 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2068 105 3 3 chr11 74229358 74229643 -76553910 - AluSp SINE Alu -28 285 1 1992 97 7 39 chr11 74229643 74229777 -76553776 - AluSx SINE Alu -188 124 1 1722 204 32 25 chr11 74229800 74230207 -76553346 - L1MB7 LINE L1 -16 6168 5759 285 98 0 0 chr11 74231028 74231069 -76552484 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 2017 68 0 0 chr11 74231069 74231320 -76552233 - AluSg SINE Alu -32 278 28 23 33 0 0 chr11 74231782 74231812 -76551741 + GC_rich Low_complexity Low_complexity 1 30 0 338 313 42 98 chr11 74232212 74232430 -76551123 - L1ME4a LINE L1 -87 6034 5840 2279 88 16 0 chr11 74232430 74232735 -76550818 - AluSp SINE Alu -1 312 3 338 313 42 98 chr11 74232735 74232851 -76550702 - L1ME4a LINE L1 -281 5840 5719 254 216 45 45 chr11 74232869 74232957 -76550596 - L2 LINE L2 -25 3247 3160 1578 177 13 29 chr11 74233088 74233398 -76550155 + AluSx SINE Alu 1 305 -7 438 354 44 19 chr11 74233444 74233873 -76549680 - L1MC4a LINE L1 -1801 6007 5568 999 216 29 111 chr11 74233873 74233929 -76549624 - MLT2D LTR ERVL 0 520 461 282 29 0 0 chr11 74233929 74233964 -76549589 + (CA)n Simple_repeat Simple_repeat 1 35 0 999 216 29 111 chr11 74233964 74234363 -76549190 - MLT2D LTR ERVL -59 461 1 1926 135 30 0 chr11 74234534 74234830 -76548723 + AluJb SINE Alu 1 305 -7 423 119 0 0 chr11 74234838 74234905 -76548648 - AluSc SINE Alu -11 298 232 329 229 40 19 chr11 74234907 74235023 -76548530 - L1MC4a LINE L1 -749 5397 5279 3183 183 92 24 chr11 74235062 74235797 -76547756 - L1MB8 LINE L1 -37 6141 5344 1985 130 3 7 chr11 74235797 74236090 -76547463 - AluSx SINE Alu -20 292 1 3183 183 92 24 chr11 74236090 74236163 -76547390 - L1MB8 LINE L1 -834 5344 5277 1021 69 15 0 chr11 74236264 74236394 -76547159 + AluSp SINE Alu 1 132 -181 2421 44 27 0 chr11 74236397 74236695 -76546858 + AluY SINE Alu 1 306 -5 1802 56 9 9 chr11 74236809 74237042 -76546511 + AluY SINE Alu 61 293 -18 2101 111 6 29 chr11 74237074 74237433 -76546120 - AluSx SINE Alu 0 356 5 180 77 0 0 chr11 74237456 74237482 -76546071 + (CA)n Simple_repeat Simple_repeat 2 27 0 966 170 0 0 chr11 74237717 74237876 -76545677 + AluSg/x SINE Alu 149 307 -5 841 175 116 95 chr11 74237876 74238161 -76545392 - LTR37B LTR ERV1 -172 296 6 525 191 0 0 chr11 74238223 74238328 -76545225 + (TG)n Simple_repeat Simple_repeat 2 106 0 2147 119 0 0 chr11 74238392 74238685 -76544868 - AluSq SINE Alu -20 293 1 828 270 87 4 chr11 74239503 74239744 -76543809 - MIR SINE MIR 0 262 2 1977 117 7 23 chr11 74239832 74240131 -76543422 - AluSx SINE Alu -18 294 1 2296 102 0 0 chr11 74240430 74240743 -76542810 - AluSq SINE Alu 0 313 1 552 179 82 30 chr11 74240744 74240878 -76542675 + LTR49-int LTR ERV1 3229 3369 -2962 1288 186 65 158 chr11 74240907 74241110 -76542443 + LTR49-int LTR ERV1 3131 3351 -2732 1766 163 7 3 chr11 74241110 74241398 -76542155 + AluJb SINE Alu 1 289 -23 1288 186 65 158 chr11 74241398 74241711 -76541842 + LTR49-int LTR ERV1 3351 3691 -2392 1958 134 0 3 chr11 74241711 74242017 -76541536 - AluSx SINE Alu 0 305 1 1288 186 65 158 chr11 74242017 74242058 -76541495 + LTR49-int LTR ERV1 3691 3734 -2349 318 48 0 0 chr11 74242058 74242100 -76541453 + FLAM_A SINE Alu 1 42 -92 1288 186 65 158 chr11 74242100 74242126 -76541427 + LTR49-int LTR ERV1 3734 3761 -2322 216 67 0 0 chr11 74242126 74242156 -76541397 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 1288 186 65 158 chr11 74242156 74242464 -76541089 + LTR49-int LTR ERV1 3761 4051 -2032 2293 53 0 0 chr11 74242464 74242783 -76540770 - AluY SINE Alu 0 319 1 1288 186 65 158 chr11 74242783 74242932 -76540621 + LTR49-int LTR ERV1 4051 4212 -1871 1011 246 65 30 chr11 74242937 74243013 -76540540 + LTR48B LTR ERV1 191 263 -381 2167 104 3 3 chr11 74243013 74243312 -76540241 + AluSg SINE Alu 1 299 -11 1011 246 65 30 chr11 74243312 74243638 -76539915 + LTR48B LTR ERV1 263 634 -10 671 172 0 9 chr11 74243686 74243802 -76539751 + FLAM_A SINE Alu 21 135 -7 1802 128 40 37 chr11 74243812 74244109 -76539444 + AluSx SINE Alu 1 298 -14 1936 115 35 0 chr11 74244153 74244439 -76539114 - AluSx SINE Alu -16 296 1 249 368 86 0 chr11 74244602 74244719 -76538834 + L2 LINE L2 3142 3268 -4 2232 95 3 3 chr11 74245142 74245446 -76538107 + AluSq SINE Alu 1 304 -9 1808 151 0 16 chr11 74245821 74246125 -76537428 + AluJb SINE Alu 1 299 -13 1678 155 36 13 chr11 74246127 74246431 -76537122 + AluJo SINE Alu 1 311 -1 350 283 28 55 chr11 74246536 74246681 -76536872 - MIR SINE MIR -11 251 111 1819 155 0 13 chr11 74246710 74247020 -76536533 - AluJo SINE Alu -6 306 1 439 216 41 0 chr11 74247169 74247266 -76536287 + MER21B LTR ERV1 1 101 -762 466 254 35 42 chr11 74247299 74247441 -76536112 + MER21B LTR ERV1 98 238 -625 1726 100 63 15 chr11 74247473 74247743 -76535810 + AluSx SINE Alu 1 283 -29 21 0 0 0 chr11 74247743 74247764 -76535789 + AT_rich Low_complexity Low_complexity 1 21 0 824 192 0 13 chr11 74247773 74247929 -76535624 - AluJo SINE Alu -157 155 2 1452 238 86 32 chr11 74247933 74248408 -76535145 + MER21B LTR ERV1 303 803 -60 529 186 16 23 chr11 74248448 74248577 -76534976 + MER4C LTR ERV1 1 128 -337 274 214 43 0 chr11 74248594 74248664 -76534889 + LTR59 LTR ERV1 208 280 -317 1847 76 8 0 chr11 74248668 74248904 -76534649 + AluSp SINE Alu 1 238 -75 337 125 0 42 chr11 74248925 74248997 -76534556 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 464 130 29 167 chr11 74249043 74249181 -76534372 + MER4C LTR ERV1 168 286 -179 1842 140 14 0 chr11 74249181 74249504 -76534049 - AluSx SINE Alu 0 327 1 904 145 0 14 chr11 74249516 74249661 -76533892 - FLAM_C SINE Alu 0 143 1 1606 220 12 0 chr11 74249662 74249985 -76533568 + LTR51 LTR ERV1 345 671 0 2275 288 7 10 chr11 74250006 74250603 -76532950 + MER21-int LTR ERV1 3396 3993 -2765 1908 145 0 0 chr11 74250603 74250922 -76532631 - AluSx SINE Alu 0 319 1 1356 159 45 102 chr11 74250925 74251259 -76532294 + MER21-int LTR ERV1 1990 2304 -1887 * 858 74 0 89 chr11 74251260 74251348 -76532205 - L1PA14 LINE L1 -1 6160 6087 2074 131 0 0 chr11 74251348 74251645 -76531908 - AluSx SINE Alu -15 297 1 858 74 0 89 chr11 74251645 74251691 -76531862 - L1PA14 LINE L1 -74 6087 6038 2481 95 0 45 chr11 74251695 74251731 -76531822 - THE1C LTR MaLR -13 362 326 1985 141 0 0 chr11 74251731 74252028 -76531525 - AluSx SINE Alu -11 301 5 2481 95 0 45 chr11 74252028 74252370 -76531183 - THE1C LTR MaLR -49 326 1 661 59 17 59 chr11 74252370 74252489 -76531064 - L1PA14 LINE L1 -119 6042 5929 1666 188 155 52 chr11 74252489 74252684 -76530869 + MER21-int LTR ERV1 2301 2474 -1717 1950 121 0 10 chr11 74252684 74252973 -76530580 + AluSx SINE Alu 1 288 -24 254 50 25 0 chr11 74252973 74253013 -76530540 + (CATAA)n Simple_repeat Simple_repeat 2 42 0 1666 188 155 52 chr11 74253021 74253289 -76530264 + MER21-int LTR ERV1 2474 2812 -1379 868 186 77 16 chr11 74253294 74253488 -76530065 - MER21-int LTR ERV1 -1939 2252 2047 3751 92 43 53 chr11 74253493 74254094 -76529459 - LTR61 LTR ERV1 0 595 1 10457 218 33 19 chr11 74254096 74257280 -76526273 - HERV3 LTR ERV1 0 8426 5136 651 207 25 0 chr11 74257256 74257377 -76526176 - HERV3 LTR ERV1 -4602 3824 3701 * 1317 196 8 0 chr11 74257369 74257614 -76525939 - HERV3 LTR ERV1 -5950 2476 2230 1282 61 0 0 chr11 74257614 74257778 -76525775 - AluY SINE Alu 0 311 148 201 313 21 21 chr11 74258007 74258103 -76525450 + CT-rich Low_complexity Low_complexity 4 99 0 1860 224 53 0 chr11 74258206 74258564 -76524989 - HERV3 LTR ERV1 -6341 2085 1709 * 4132 220 90 46 chr11 74258560 74260041 -76523512 - HERV3 LTR ERV1 -7017 1409 1 3592 94 61 48 chr11 74260041 74260612 -76522941 - LTR61 LTR ERV1 0 595 14 189 0 0 0 chr11 74260612 74260633 -76522920 + (TTA)n Simple_repeat Simple_repeat 2 22 0 3592 94 61 48 chr11 74260633 74260648 -76522905 - LTR61 LTR ERV1 -581 14 1 1822 187 75 123 chr11 74260671 74261080 -76522473 + MER21-int LTR ERV1 2814 3186 -1005 2266 84 0 34 chr11 74261080 74261402 -76522151 + AluY SINE Alu 1 311 0 1822 187 75 123 chr11 74261402 74261602 -76521951 + MER21-int LTR ERV1 3186 3394 -797 297 0 0 0 chr11 74261614 74261647 -76521906 + (TA)n Simple_repeat Simple_repeat 1 33 0 2323 76 3 0 chr11 74261647 74261948 -76521605 - AluSp SINE Alu -11 302 1 671 110 6 55 chr11 74262064 74262227 -76521326 + (GGAGA)n Simple_repeat Simple_repeat 5 159 0 1829 128 38 3 chr11 74262969 74263137 -76520416 - AluSx SINE Alu 0 312 128 2064 105 20 3 chr11 74263137 74263431 -76520122 - AluSc SINE Alu -10 299 1 1829 128 38 3 chr11 74263431 74263551 -76520002 - AluSx SINE Alu -184 128 14 318 327 9 9 chr11 74263779 74263886 -76519667 + MIR SINE MIR 42 148 -60 415 335 57 9 chr11 74264320 74264550 -76519003 + L1ME LINE L1 5575 5815 -306 797 205 6 19 chr11 74264611 74264772 -76518781 + L1MA10 LINE L1 6175 6333 -1 2166 105 3 0 chr11 74264903 74265198 -76518355 - AluSx SINE Alu -16 296 1 417 276 103 21 chr11 74265327 74265586 -76517967 + L2 LINE L2 2773 3057 -256 7320 52 5 11 chr11 74265697 74267268 -76516285 - SVA Other Other -799 1386 2 1208 128 0 0 chr11 74267280 74267460 -76516093 - AluSp SINE Alu -13 300 121 573 226 55 12 chr11 74267460 74267624 -76515929 - AluY SINE Alu -11 300 130 1565 139 36 7 chr11 74270608 74270882 -76512671 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr11 74271385 74271405 -76512148 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr11 74271565 74271586 -76511967 + AT_rich Low_complexity Low_complexity 1 21 0 441 0 0 0 chr11 74271721 74271770 -76511783 + (T)n Simple_repeat Simple_repeat 1 49 0 778 192 86 0 chr11 74272499 74272650 -76510903 - FRAM SINE Alu -2 164 1 2039 132 3 3 chr11 74272995 74273305 -76510248 + AluSg SINE Alu 1 310 0 291 28 0 0 chr11 74273456 74273492 -76510061 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 2026 137 10 0 chr11 74273543 74273850 -76509703 - AluSx SINE Alu 0 312 3 1441 199 10 24 chr11 74273852 74274149 -76509404 - AluJo SINE Alu -19 293 1 301 148 0 19 chr11 74274491 74274545 -76509008 - MIR SINE MIR -162 100 48 225 325 11 73 chr11 74274595 74274786 -76508767 + MIR SINE MIR 37 215 -47 1802 99 4 0 chr11 74275331 74275573 -76507980 - AluSx SINE Alu -16 296 54 1621 162 48 7 chr11 74275602 74275874 -76507679 - AluJo SINE Alu -29 283 1 2221 110 3 0 chr11 74275879 74276189 -76507364 - AluSx SINE Alu -1 311 1 603 198 56 8 chr11 74276360 74276486 -76507067 + FLAM_A SINE Alu 1 132 -1 1971 92 85 3 chr11 74276587 74276869 -76506684 - AluSq SINE Alu -8 305 1 560 280 26 58 chr11 74277826 74277861 -76505692 + MIR SINE MIR 17 52 -210 2006 119 0 3 chr11 74277861 74278177 -76505376 - AluSx SINE Alu 0 315 1 560 280 26 58 chr11 74278177 74278329 -76505224 + MIR SINE MIR 52 199 -63 1547 152 47 0 chr11 74278498 74278754 -76504799 - AluSx SINE Alu -44 268 1 2061 100 14 0 chr11 74279831 74280120 -76503433 + AluSx SINE Alu 1 293 -19 2129 77 13 13 chr11 74280120 74280419 -76503134 + AluY SINE Alu 1 299 -12 1597 152 4 0 chr11 74280754 74281004 -76502549 + AluJb SINE Alu 36 286 -26 769 163 0 0 chr11 74281277 74281400 -76502153 - FLAM_C SINE Alu -1 142 20 1776 177 0 3 chr11 74283729 74284029 -76499524 + AluJb SINE Alu 1 299 -13 2110 127 3 0 chr11 74285368 74285667 -76497886 - AluSx SINE Alu -12 300 1 180 158 0 0 chr11 74285852 74285890 -76497663 + T-rich Low_complexity Low_complexity 1 38 0 2313 86 7 0 chr11 74285972 74286274 -76497279 + AluSq SINE Alu 1 304 -9 1760 131 58 7 chr11 74288144 74288440 -76495113 + AluJb SINE Alu 3 312 0 2204 114 3 0 chr11 74288752 74289058 -76494495 - AluSx SINE Alu -5 307 1 713 179 16 0 chr11 74289109 74289232 -76494321 + FLAM_C SINE Alu 2 126 -17 23 0 0 29 chr11 74289232 74289252 -76494301 + AT_rich Low_complexity Low_complexity 1 21 -12 2204 88 3 7 chr11 74289252 74289549 -76494004 + AluSx SINE Alu 1 296 -16 23 0 0 29 chr11 74289549 74289562 -76493991 + AT_rich Low_complexity Low_complexity 21 33 0 1748 151 0 42 chr11 74289886 74290198 -76493355 + AluJb SINE Alu 1 299 -13 698 215 8 116 chr11 74290781 74290872 -76492681 - MER63 DNA MER1_type -18 1044 945 1971 102 3 31 chr11 74290872 74291195 -76492358 + AluSx SINE Alu 2 316 0 698 215 8 116 chr11 74291195 74291212 -76492341 - MER63 DNA MER1_type -117 945 928 579 231 74 0 chr11 74291212 74291333 -76492220 + FLAM_A SINE Alu 1 130 -3 698 215 8 116 chr11 74291333 74291464 -76492089 - MER63 DNA MER1_type -134 928 829 1024 103 0 26 chr11 74291896 74292051 -76491502 - AluSq/x SINE Alu -162 151 1 231 342 37 41 chr11 74292145 74292361 -76491192 + MIR3 SINE MIR 11 229 -33 979 139 102 23 chr11 74293011 74293226 -76490327 - AluJb SINE Alu -23 289 58 287 330 210 16 chr11 74293649 74294073 -76489480 - L2 LINE L2 -1858 1456 951 229 203 158 75 chr11 74295714 74295847 -76487706 - L2 LINE L2 -3 3310 3167 1855 116 11 0 chr11 74295931 74296199 -76487354 - AluSx SINE Alu -16 296 26 333 197 0 0 chr11 74296305 74296371 -76487182 + Charlie4 DNA MER1_type 1890 1955 -6 2126 114 0 7 chr11 74296532 74296840 -76486713 - AluSx SINE Alu -5 307 2 260 200 0 0 chr11 74296840 74296895 -76486658 + Alu SINE Alu 248 302 0 812 254 95 52 chr11 74296973 74297300 -76486253 - MER58B DNA MER1_type 0 341 1 1747 140 32 4 chr11 74297367 74297646 -76485907 + AluJb SINE Alu 1 287 -25 1693 161 177 11 chr11 74297745 74298117 -76485436 + MER4C LTR ERV1 32 465 0 2531 55 0 0 chr11 74298118 74298428 -76485125 - AluY SINE Alu -1 310 1 2043 123 10 10 chr11 74298449 74298759 -76484794 - AluSq SINE Alu -3 310 1 1618 137 7 51 chr11 74299302 74299594 -76483959 - AluJb SINE Alu -22 290 12 2112 104 0 36 chr11 74299820 74300128 -76483425 + AluSx SINE Alu 1 297 -15 469 339 71 28 chr11 74300498 74300893 -76482660 - L1M4 LINE L1 -2052 4094 3683 313 274 29 10 chr11 74300904 74301006 -76482547 + MIR SINE MIR 8 111 -151 22 56 0 0 chr11 74301395 74301431 -76482122 + AT_rich Low_complexity Low_complexity 1 36 0 356 250 144 31 chr11 74301822 74301982 -76481571 + MIR SINE MIR 21 198 -64 2193 99 0 3 chr11 74302125 74302418 -76481135 + AluSq SINE Alu 1 292 -21 204 352 14 0 chr11 74302670 74302741 -76480812 - MIR SINE MIR -116 146 75 914 165 107 62 chr11 74302801 74303043 -76480510 + MER4C LTR ERV1 32 284 -181 3545 142 51 9 chr11 74303677 74304320 -76479233 + MER50 LTR ERV1 1 670 -64 477 132 0 0 chr11 74304432 74304500 -76479053 - AluSc SINE Alu -142 167 100 1279 112 0 0 chr11 74304500 74304669 -76478884 + AluSg/x SINE Alu 143 311 -1 222 153 8 252 chr11 74305548 74305679 -76477874 - L2 LINE L2 -4 3309 3211 2143 167 69 32 chr11 74305679 74305978 -76477575 + L1MB7 LINE L1 5587 5910 -274 1853 165 3 22 chr11 74305978 74306293 -76477260 + AluJo SINE Alu 4 312 0 2143 167 69 32 chr11 74306293 74306455 -76477098 + L1MB7 LINE L1 5910 6065 -119 1321 131 0 0 chr11 74306455 74306638 -76476915 + AluSx SINE Alu 1 183 -129 575 97 8 81 chr11 74306639 74306763 -76476790 + L1MB7 LINE L1 6069 6183 -1 260 211 18 0 chr11 74306767 74306824 -76476729 - L2 LINE L2 -92 3221 3164 2110 160 0 0 chr11 74307006 74307318 -76476235 + AluJo SINE Alu 1 312 0 219 257 35 62 chr11 74308089 74308233 -76475320 - L2 LINE L2 -245 3068 2929 1494 119 163 12 chr11 74308313 74308564 -76474989 + AluSg1 SINE Alu 1 289 -20 267 54 0 0 chr11 74308721 74308758 -76474795 + (A)n Simple_repeat Simple_repeat 1 37 0 183 155 225 14 chr11 74308760 74308831 -76474722 - MIR SINE MIR -130 132 47 688 127 18 0 chr11 74309132 74309242 -76474311 - LTR64 LTR ERVK -220 338 227 2330 102 3 0 chr11 74309244 74309547 -76474006 - AluSp SINE Alu -9 304 1 260 126 0 200 chr11 74309549 74309603 -76473950 + Charlie5 DNA MER1_type 2545 2574 -50 1962 143 3 3 chr11 74309603 74309890 -76473663 + AluJb SINE Alu 21 307 -5 260 126 0 200 chr11 74309890 74309930 -76473623 + Charlie5 DNA MER1_type 2574 2620 -4 530 108 0 0 chr11 74310333 74310407 -76473146 - AluSg/x SINE Alu -18 291 218 1627 59 0 0 chr11 74310407 74310594 -76472959 - AluY SINE Alu -124 187 1 2425 91 0 7 chr11 74311449 74311747 -76471806 - AluSg SINE Alu -14 296 1 2101 139 0 0 chr11 74311804 74312084 -76471469 - AluSx SINE Alu -32 280 1 2303 96 0 13 chr11 74312234 74312536 -76471017 - AluSx SINE Alu -14 298 1 2250 100 3 7 chr11 74313206 74313506 -76470047 + AluSc SINE Alu 1 299 -10 527 247 201 0 chr11 74313687 74313861 -76469692 - MER58A DNA MER1_type -15 209 1 2197 110 7 23 chr11 74314724 74315033 -76468520 - AluSx SINE Alu -8 304 1 38 0 0 0 chr11 74315118 74315156 -76468397 + AT_rich Low_complexity Low_complexity 1 38 0 388 282 123 56 chr11 74315249 74315360 -76468193 - MIR SINE MIR -11 251 149 2556 86 0 6 chr11 74315360 74315675 -76467878 + AluSq SINE Alu 1 313 0 388 282 123 56 chr11 74315675 74315758 -76467795 - MIR SINE MIR -113 149 44 710 156 90 0 chr11 74316093 74316215 -76467338 - FLAM_C SINE Alu 0 133 1 1430 156 0 5 chr11 74316243 74316455 -76467098 + AluJo SINE Alu 1 211 -101 1267 134 40 13 chr11 74316460 74316684 -76466869 - LOR1b LTR ERV1 -6 455 226 450 203 147 12 chr11 74316686 74316849 -76466704 - LOR1a LTR ERV1 -311 186 2 401 151 41 0 chr11 74316854 74316927 -76466626 + Alu SINE Alu 232 307 -3 2357 96 55 0 chr11 74316970 74317313 -76466240 - LTR1 LTR ERV1 0 785 424 2341 108 0 0 chr11 74317775 74318080 -76465473 - AluSq SINE Alu -8 305 1 2024 136 10 3 chr11 74318080 74318381 -76465172 - AluSx SINE Alu -9 303 1 2176 116 0 0 chr11 74318490 74318782 -76464771 + AluSx SINE Alu 1 292 -20 2375 82 20 3 chr11 74319574 74319877 -76463676 - AluSg SINE Alu -2 308 1 1701 222 97 91 chr11 74320512 74320961 -76462592 - L1MEc LINE L1 -2500 4144 3699 2341 111 0 13 chr11 74320961 74321276 -76462277 + AluSx SINE Alu 2 312 0 1701 222 97 91 chr11 74321276 74321289 -76462264 - L1MEc LINE L1 -2945 3699 3688 813 95 9 0 chr11 74321289 74321405 -76462148 - FLAM_C SINE Alu -16 117 1 1701 222 97 91 chr11 74321405 74321769 -76461784 - L1MEc LINE L1 -2956 3688 3312 184 56 0 56 chr11 74321769 74321805 -76461748 + (TCCCC)n Simple_repeat Simple_repeat 1 34 0 282 56 0 0 chr11 74321831 74321867 -76461686 + (TCTCC)n Simple_repeat Simple_repeat 4 39 0 618 196 0 0 chr11 74321917 74322029 -76461524 - FLAM_A SINE Alu -30 112 1 1433 225 123 53 chr11 74322032 74322494 -76461059 - L1MEc LINE L1 -3314 3330 2902 1451 214 25 0 chr11 74322494 74322816 -76460737 - L1MB2 LINE L1 0 6171 5842 656 199 18 64 chr11 74322821 74322992 -76460561 - FRAM SINE Alu -3 163 1 1433 225 123 53 chr11 74322992 74323084 -76460469 - L1MEc LINE L1 -3745 2899 2731 1668 191 0 10 chr11 74323091 74323379 -76460174 - AluJb SINE Alu -27 285 1 1406 179 11 55 chr11 74323381 74323655 -76459898 - AluJo SINE Alu -16 296 35 1663 265 67 35 chr11 74323658 74323873 -76459680 - L1MEc LINE L1 -4048 2777 2570 676 182 8 0 chr11 74323873 74323994 -76459559 - FLAM_C SINE Alu -11 122 1 1663 265 67 35 chr11 74323994 74324644 -76458909 - L1MEc LINE L1 -4255 2570 1879 1895 114 76 10 chr11 74324644 74324934 -76458619 + AluSx SINE Alu 1 309 -3 1663 265 67 35 chr11 74324934 74324999 -76458554 - L1MEc LINE L1 -4946 1879 1817 2230 101 7 0 chr11 74325002 74325289 -76458264 - AluSg SINE Alu -21 289 1 720 115 65 22 chr11 74325295 74325434 -76458119 - L1MB1 LINE L1 0 6168 6024 3166 238 70 43 chr11 74325447 74325786 -76457767 - L1MEc LINE L1 -5273 1552 1224 2325 113 10 0 chr11 74325786 74326095 -76457458 - AluSx SINE Alu 0 312 1 3166 238 70 43 chr11 74326095 74326812 -76456741 - L1MEc LINE L1 -5601 1224 467 1926 215 125 17 chr11 74326937 74327446 -76456107 - MLT1E LTR MaLR -11 582 18 1411 150 13 0 chr11 74327446 74327673 -76455880 - MER30 DNA MER1_type 0 230 1 2201 126 0 10 chr11 74327735 74328044 -76455509 - AluSx SINE Alu -6 306 1 6411 205 69 33 chr11 74328083 74328862 -76454691 - L1M4 LINE L1 -4488 2158 1408 2331 104 0 0 chr11 74328862 74329159 -76454394 - AluSc SINE Alu -7 302 6 6411 205 69 33 chr11 74329159 74329351 -76454202 - L1M4 LINE L1 -5238 1408 1224 2105 119 11 0 chr11 74329351 74329658 -76453895 - AluSx SINE Alu 0 310 1 6411 205 69 33 chr11 74329658 74330699 -76452854 - L1M4 LINE L1 -5422 1224 33 217 339 45 9 chr11 74332125 74332237 -76451316 + L2 LINE L2 3153 3268 -4 5847 120 169 18 chr11 74333182 74334292 -76449261 - MER52C LTR ERV1 0 1278 1 597 305 58 9 chr11 74334993 74335216 -76448337 + MIR SINE MIR 10 243 -19 1631 220 78 23 chr11 74335277 74335749 -76447804 - MLT1D LTR MaLR 0 505 8 359 332 35 64 chr11 74337199 74337545 -76446008 - MLT1K LTR MaLR -38 550 215 253 333 162 0 chr11 74340427 74340544 -76443009 - L2 LINE L2 -4 3268 3133 811 141 0 81 chr11 74340550 74340699 -76442854 - FLAM_C SINE Alu -6 137 1 271 224 56 32 chr11 74341493 74341618 -76441935 - L2 LINE L2 -173 3099 2972 24 0 0 0 chr11 74343156 74343180 -76440373 + AT_rich Low_complexity Low_complexity 1 24 0 643 209 63 44 chr11 74344005 74344211 -76439342 + MLT1K LTR MaLR 369 578 -10 243 248 48 48 chr11 74344443 74344548 -76439005 + MIR SINE MIR 36 140 -68 441 236 32 0 chr11 74345143 74345267 -76438286 + MIR SINE MIR 112 239 -23 2477 239 77 26 chr11 74345910 74346139 -76437414 - L1MB7 LINE L1 -12 6172 5956 1500 175 101 18 chr11 74346139 74346476 -76437077 + MER47A DNA MER2_type 2 366 0 2477 239 77 26 chr11 74346476 74347028 -76436525 - L1MB7 LINE L1 -228 5956 5351 1975 122 12 61 chr11 74347032 74347359 -76436194 - AluJb SINE Alu -1 311 1 613 195 0 0 chr11 74347359 74347477 -76436076 - FLAM_C SINE Alu -3 140 23 2027 209 43 26 chr11 74347633 74347717 -76435836 - L1MB7 LINE L1 -790 5356 5275 2175 93 0 7 chr11 74347717 74348022 -76435531 + AluSc SINE Alu 1 303 0 2027 209 43 26 chr11 74348022 74348347 -76435206 - L1MB7 LINE L1 -871 5275 4931 185 0 0 39 chr11 74348347 74348373 -76435180 + (TTGG)n Simple_repeat Simple_repeat 1 25 0 2027 209 43 26 chr11 74348373 74348539 -76435014 - L1MB7 LINE L1 -1215 4931 4769 2602 68 3 3 chr11 74348722 74349032 -76434521 + AluSx SINE Alu 1 310 -2 363 181 207 19 chr11 74349231 74349339 -76434214 - MLT1G3 LTR MaLR 0 555 425 226 267 83 8 chr11 74349353 74349473 -76434080 + LTR16A1 LTR ERVL 222 350 -107 244 322 215 0 chr11 74349543 74349692 -76433861 + L2 LINE L2 2192 2372 -942 670 205 167 59 chr11 74349714 74349984 -76433569 + MLT1D LTR MaLR 20 317 -150 2215 98 3 44 chr11 74350032 74350350 -76433203 - AluSq SINE Alu -8 305 1 867 212 12 0 chr11 74350358 74350523 -76433030 - AluJo SINE Alu -26 286 120 411 295 83 62 chr11 74350524 74350765 -76432788 - HAL1 LINE L1 -1329 1178 933 288 286 30 45 chr11 74350992 74351125 -76432428 - HAL1 LINE L1 -1959 548 418 899 180 92 23 chr11 74351187 74351404 -76432149 - L1MB3 LINE L1 -14 6169 5938 330 233 50 8 chr11 74351395 74351515 -76432038 - HAL1 LINE L1 -2133 374 250 * 3458 112 4 20 chr11 74351595 74352102 -76431451 + MER1A DNA MER1_type 31 529 0 1808 147 39 18 chr11 74352135 74352421 -76431132 - AluJb SINE Alu -20 292 1 788 147 0 22 chr11 74352583 74352719 -76430834 + FLAM_A SINE Alu 1 133 0 2025 142 7 3 chr11 74354019 74354308 -76429245 - AluJb SINE Alu -15 297 8 1834 137 0 55 chr11 74354322 74354615 -76428938 - AluJb SINE Alu -35 277 1 254 122 0 24 chr11 74354580 74354621 -76428932 - AluSp SINE Alu -133 170 131 * 476 248 55 0 chr11 74354615 74354760 -76428793 - L1MB3 LINE L1 -207 5971 5819 2397 84 7 7 chr11 74354760 74355058 -76428495 - AluSx SINE Alu -14 298 1 302 261 162 27 chr11 74355058 74355169 -76428384 + MIR SINE MIR 126 251 -11 32 26 0 0 chr11 74355262 74355301 -76428252 + AT_rich Low_complexity Low_complexity 1 39 0 2197 110 7 23 chr11 74355386 74355695 -76427858 + AluSx SINE Alu 1 304 -8 541 241 201 0 chr11 74356558 74356732 -76426821 + MER58A DNA MER1_type 1 209 -15 2259 100 3 7 chr11 74356913 74357214 -76426339 - AluSc SINE Alu -9 300 1 2327 93 0 13 chr11 74357884 74358186 -76425367 + AluSx SINE Alu 1 298 -14 453 153 0 71 chr11 74358337 74358435 -76425118 + AluS SINE Alu 2 92 -221 640 118 0 85 chr11 74358525 74358678 -76424875 + AluSg/x SINE Alu 141 280 -32 594 35 23 23 chr11 74358738 74358825 -76424728 + AluSg SINE Alu 2 88 -222 2497 45 3 0 chr11 74358925 74359212 -76424341 - AluY SINE Alu -23 288 1 198 0 0 0 chr11 74359620 74359642 -76423911 + (A)n Simple_repeat Simple_repeat 1 22 0 2170 146 0 0 chr11 74359642 74359944 -76423609 + AluJb SINE Alu 1 302 -10 2486 81 0 3 chr11 74360405 74360712 -76422841 - AluSx SINE Alu -6 306 1 2408 106 0 0 chr11 74361466 74361769 -76421784 + AluSx SINE Alu 1 303 -9 411 275 258 0 chr11 74362479 74362646 -76420907 - MIR SINE MIR -20 242 33 614 253 79 0 chr11 74363745 74363947 -76419606 + MER20 DNA MER1_type 1 218 -1 1910 161 24 0 chr11 74363999 74364291 -76419262 - AluJb SINE Alu -13 299 1 1848 113 106 0 chr11 74364408 74364673 -76418880 + AluSx SINE Alu 1 293 -19 200 361 14 0 chr11 74365318 74365390 -76418163 + MIR SINE MIR 31 103 -159 2202 121 14 0 chr11 74365411 74365708 -76417845 + AluSx SINE Alu 1 301 -11 212 250 160 20 chr11 74365753 74365853 -76417700 + MIR SINE MIR 95 208 -54 1987 160 7 0 chr11 74366213 74366513 -76417040 + AluJb SINE Alu 3 304 -8 2416 73 7 0 chr11 74366670 74366959 -76416594 - AluSq SINE Alu -22 291 1 302 337 59 0 chr11 74367061 74367248 -76416305 + L1ME2 LINE L1 4055 4252 -1894 2215 105 14 0 chr11 74367285 74367581 -76415972 + AluY SINE Alu 1 300 -11 1836 140 92 22 chr11 74367641 74367790 -76415763 + MLT1B LTR MaLR 8 145 -245 2283 109 3 7 chr11 74367790 74368093 -76415460 + AluSx SINE Alu 1 302 -10 1836 140 92 22 chr11 74368093 74368300 -76415253 + MLT1B LTR MaLR 145 389 -1 2253 131 0 0 chr11 74368447 74368783 -76414770 + AluSx SINE Alu 1 336 0 264 307 59 13 chr11 74368789 74369163 -76414390 + L1ME2 LINE L1 5258 5395 -767 2184 112 7 16 chr11 74369524 74369827 -76413726 - AluSx SINE Alu -10 302 3 317 344 119 7 chr11 74369827 74369978 -76413575 - L1M4 LINE L1 -742 5432 5265 1439 177 91 64 chr11 74370103 74370196 -76413357 + MLT1C LTR MaLR 1 90 -377 2112 133 3 17 chr11 74370196 74370498 -76413055 - AluJb SINE Alu -14 298 1 1439 177 91 64 chr11 74370498 74370855 -76412698 + MLT1C LTR MaLR 90 463 -4 2235 123 0 25 chr11 74370934 74371251 -76412302 - AluSx SINE Alu -3 309 1 2176 107 20 20 chr11 74371664 74371964 -76411589 - AluSq SINE Alu -13 300 1 2463 76 3 0 chr11 74372184 74372485 -76411068 + AluY SINE Alu 1 302 -9 244 268 0 0 chr11 74372696 74372752 -76410801 - MER94 DNA DNA -77 57 2 1840 148 4 0 chr11 74372905 74373168 -76410385 + AluJb SINE Alu 12 275 -37 180 0 0 0 chr11 74373176 74373196 -76410357 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2561 71 0 3 chr11 74373587 74373896 -76409657 + AluY SINE Alu 1 308 -3 577 219 37 119 chr11 74374255 74374528 -76409025 + L1ME2 LINE L1 5855 6265 -69 2187 137 0 0 chr11 74374528 74374834 -76408719 - AluSq SINE Alu -7 306 1 577 219 37 119 chr11 74374834 74374897 -76408656 + L1ME2 LINE L1 6265 6332 -2 281 258 20 46 chr11 74375685 74375766 -76407787 + A-rich Low_complexity Low_complexity 1 78 -69 2186 109 7 0 chr11 74375766 74376059 -76407494 + AluSx SINE Alu 15 309 -3 281 258 20 46 chr11 74376059 74376128 -76407425 + A-rich Low_complexity Low_complexity 78 147 0 2258 89 4 0 chr11 74376398 74376699 -76406854 + AluSq SINE Alu 1 302 0 451 178 0 22 chr11 74377324 74377414 -76406139 + FLAM SINE Alu 44 131 -12 27 0 0 0 chr11 74377414 74377441 -76406112 + AT_rich Low_complexity Low_complexity 1 27 0 1980 169 0 7 chr11 74377512 74377819 -76405734 + AluJo SINE Alu 1 305 -7 2309 105 3 6 chr11 74377819 74378132 -76405421 + AluSx SINE Alu 1 312 0 1035 104 0 8 chr11 74379002 74379136 -76404417 + FLAM_C SINE Alu 1 133 -10 2090 143 0 23 chr11 74379590 74379897 -76403656 + AluJb SINE Alu 1 300 -12 21 36 0 0 chr11 74380058 74380086 -76403467 + AT_rich Low_complexity Low_complexity 1 28 0 1592 153 0 87 chr11 74380482 74380770 -76402783 + AluJo SINE Alu 1 263 -49 1859 161 21 0 chr11 74380956 74381241 -76402312 + AluJo SINE Alu 1 291 -21 2205 145 0 0 chr11 74381471 74381767 -76401786 + AluSx SINE Alu 1 296 -16 1672 195 76 22 chr11 74381883 74382419 -76401134 + L1MB5 LINE L1 5505 6168 -6 1615 176 0 18 chr11 74382478 74382571 -76400982 + AluJb SINE Alu 44 137 -175 2296 84 10 20 chr11 74382571 74382868 -76400685 + AluY SINE Alu 1 294 -17 1615 176 0 18 chr11 74382868 74383047 -76400506 + AluJb SINE Alu 137 311 -1 1389 174 19 1 chr11 74383236 74383525 -76400028 + L1MB4 LINE L1 5749 6040 -128 2316 88 0 0 chr11 74383550 74383882 -76399671 + AluSx SINE Alu 1 332 0 605 101 0 11 chr11 74384250 74384339 -76399214 + 5S rRNA rRNA 3 90 -31 1325 164 36 9 chr11 74384521 74384741 -76398812 + AluJb SINE Alu 87 312 0 2136 121 3 7 chr11 74385289 74385587 -76397966 + AluSx SINE Alu 1 297 -15 1868 148 13 42 chr11 74386140 74386450 -76397103 - AluJb SINE Alu -11 301 1 1797 184 18 0 chr11 74386472 74386750 -76396803 + AluJb SINE Alu 1 283 -29 207 139 0 0 chr11 74386948 74386971 -76396582 + (A)n Simple_repeat Simple_repeat 1 26 -17 2086 136 13 3 chr11 74386971 74387279 -76396274 + AluSq SINE Alu 1 311 -2 207 139 0 0 chr11 74387279 74387298 -76396255 + (A)n Simple_repeat Simple_repeat 25 43 0 2121 132 10 3 chr11 74388694 74388989 -76394564 - AluSx SINE Alu -15 297 1 849 153 0 0 chr11 74389144 74389268 -76394285 + AluJb SINE Alu 1 124 -188 185 130 43 0 chr11 74389275 74389321 -76394232 + A-rich Low_complexity Low_complexity 1 48 0 867 110 47 0 chr11 74389820 74389947 -76393606 - FLAM_C SINE Alu 0 133 1 2250 120 0 3 chr11 74390215 74390515 -76393038 + AluSx SINE Alu 1 299 -13 2268 99 3 3 chr11 74391023 74391316 -76392237 + AluSq SINE Alu 1 293 -20 468 130 0 0 chr11 74391549 74391618 -76391935 - AluS SINE Alu -239 73 5 245 322 51 25 chr11 74391896 74392014 -76391539 + MIR SINE MIR 21 141 -67 345 261 140 25 chr11 74393343 74393500 -76390053 + L1MC5 LINE L1 7754 7928 -33 1605 146 4 17 chr11 74393567 74393806 -76389747 + AluSx SINE Alu 1 236 -76 872 195 0 23 chr11 74393838 74394012 -76389541 - LTR49-int LTR ERV1 -3689 2642 2473 1199 167 24 19 chr11 74394118 74394328 -76389225 + AluJb SINE Alu 85 295 -17 2604 49 0 7 chr11 74394918 74395225 -76388328 - AluY SINE Alu -4 307 3 2028 165 0 0 chr11 74395309 74395606 -76387947 - AluJb SINE Alu -15 297 1 840 91 41 9 chr11 74397375 74397804 -76385749 + (TG)n Simple_repeat Simple_repeat 1 442 0 189 274 157 29 chr11 74397986 74398088 -76385465 - L2 LINE L2 0 3313 3199 283 220 156 9 chr11 74398649 74398758 -76384795 - L2 LINE L2 -609 2705 2581 200 281 34 22 chr11 74398921 74399010 -76384543 - L2 LINE L2 -924 2390 2301 2050 132 4 0 chr11 74399183 74399491 -76384062 + AluJb SINE Alu 1 309 0 2170 106 0 3 chr11 74399698 74399990 -76383563 - AluSx SINE Alu -21 291 1 1955 144 0 4 chr11 74400626 74400932 -76382621 - AluJb SINE Alu 0 310 6 886 227 61 0 chr11 74400934 74401006 -76382547 + Tigger7 DNA MER2_type 20 86 -647 2269 115 3 0 chr11 74401006 74401302 -76382251 + AluSx SINE Alu 1 297 -15 886 227 61 0 chr11 74401302 74401427 -76382126 + Tigger7 DNA MER2_type 86 229 -504 1088 218 81 50 chr11 74401483 74401611 -76381942 + MER2 DNA MER2_type 6 129 -216 1729 121 88 29 chr11 74401611 74401745 -76381808 - AluSx SINE Alu -23 289 164 2494 89 0 0 chr11 74401745 74402058 -76381495 - AluSq SINE Alu 0 313 1 1729 121 88 29 chr11 74402058 74402196 -76381357 - AluSx SINE Alu -148 164 1 1088 218 81 50 chr11 74402196 74402388 -76381165 + MER2 DNA MER2_type 129 336 -9 477 155 12 12 chr11 74402394 74402478 -76381075 + Tigger7 DNA MER2_type 2404 2487 0 980 204 45 0 chr11 74402499 74402700 -76380853 + L1MB7 LINE L1 5405 5614 -570 807 172 0 14 chr11 74402701 74402846 -76380707 + FLAM_C SINE Alu 1 143 0 1892 167 3 3 chr11 74402855 74403154 -76380399 + AluJo SINE Alu 1 299 -13 2609 168 40 35 chr11 74403160 74403659 -76379894 + L1MB7 LINE L1 5601 6105 -79 1520 132 0 0 chr11 74403659 74403863 -76379690 + AluJb SINE Alu 87 290 -22 2609 168 40 35 chr11 74403863 74403935 -76379618 + L1MB7 LINE L1 6105 6175 -9 1550 148 10 89 chr11 74404088 74404112 -76379441 + L1PA16 LINE L1 5806 5830 -336 2260 88 3 3 chr11 74404112 74404423 -76379130 + AluSp SINE Alu 1 311 0 1550 148 10 89 chr11 74404423 74404570 -76378983 + L1PA16 LINE L1 5830 5987 -179 2599 68 0 3 chr11 74404570 74404881 -76378672 + AluSq SINE Alu 1 310 -3 1550 148 10 89 chr11 74404881 74405098 -76378455 + L1PA16 LINE L1 5987 6165 -1 832 170 59 0 chr11 74405181 74405316 -76378237 - AluJo/FRAM SINE Alu -22 290 148 1486 210 64 17 chr11 74605631 74605988 -76177565 - THE1C LTR MaLR -1 374 1 416 277 18 0 chr11 74605988 74606100 -76177453 + L1MD3 LINE L1 7826 7939 -56 1368 188 3 36 chr11 74606118 74606422 -76177131 + AluSx SINE Alu 1 294 -18 24 0 0 0 chr11 74606564 74606588 -76176965 + GC_rich Low_complexity Low_complexity 1 24 0 512 192 6 0 chr11 74606606 74606734 -76176819 + L1ME4a LINE L1 5267 5400 -768 2504 73 3 0 chr11 74607366 74607668 -76175885 - AluSx SINE Alu -9 303 1 293 297 83 88 chr11 74607862 74608054 -76175499 - MIR3 SINE MIR -3 205 15 582 193 15 37 chr11 74608055 74608190 -76175363 - MER45A DNA AcHobo -10 168 37 331 306 50 8 chr11 74608258 74608379 -76175174 + MIR SINE MIR 58 183 -79 2130 128 20 0 chr11 74608410 74608715 -76174838 + AluSx SINE Alu 1 311 -1 1868 162 77 13 chr11 74608833 74609209 -76174344 - MSTB LTR MaLR -8 418 19 2182 125 0 0 chr11 74609564 74609867 -76173686 - AluSx SINE Alu -5 307 5 624 294 6 6 chr11 74609978 74610155 -76173398 + MIR SINE MIR 86 262 0 599 239 72 0 chr11 74611478 74611645 -76171908 - L1MB7 LINE L1 -110 6074 5896 10616 129 23 31 chr11 74611645 74611656 -76171897 - Tigger1 DNA MER2_type -153 2265 2255 2117 138 3 0 chr11 74611656 74611960 -76171593 - AluSx SINE Alu -7 305 1 10616 129 23 31 chr11 74611960 74613447 -76170106 - Tigger1 DNA MER2_type -163 2255 781 1707 163 19 44 chr11 74613447 74613766 -76169787 + AluJb SINE Alu 1 311 -1 10616 129 23 31 chr11 74613766 74614130 -76169423 - Tigger1 DNA MER2_type -1637 781 416 984 178 17 0 chr11 74614124 74614304 -76169249 - Tigger1 DNA MER2_type -2235 183 1 * 1175 192 8 4 chr11 74614304 74614538 -76169015 - L1MB7 LINE L1 -339 5835 5601 618 299 17 0 chr11 74615469 74615643 -76167910 - MIR SINE MIR -5 257 81 194 306 74 28 chr11 74615983 74616091 -76167462 + MIR SINE MIR 39 151 -111 1214 259 68 25 chr11 74616095 74616535 -76167018 + MLT1C LTR MaLR 3 461 -6 541 284 66 39 chr11 74616605 74616916 -76166637 + L1ME4a LINE L1 5538 5839 -282 471 35 0 0 chr11 74616916 74616973 -76166580 + (TA)n Simple_repeat Simple_repeat 2 58 0 2092 125 0 33 chr11 74616973 74617277 -76166276 - AluSq SINE Alu -19 294 1 541 284 66 39 chr11 74617277 74617298 -76166255 + L1ME4a LINE L1 5838 5880 -241 1754 199 27 29 chr11 74617301 74617709 -76165844 + L1MC2 LINE L1 5911 6317 -27 5010 160 21 32 chr11 74617714 74618382 -76165171 + L1MA7 LINE L1 5274 5929 -362 2128 123 0 26 chr11 74618382 74618690 -76164863 + AluSg SINE Alu 1 300 -10 5010 160 21 32 chr11 74618690 74619050 -76164503 + L1MA7 LINE L1 5929 6291 0 22 0 0 0 chr11 74619082 74619104 -76164449 + AT_rich Low_complexity Low_complexity 1 22 0 2317 104 3 7 chr11 74619329 74619628 -76163925 - AluSq SINE Alu -15 298 1 245 326 0 30 chr11 74620305 74620440 -76163113 + (TG)n Simple_repeat Simple_repeat 1 131 0 341 311 0 38 chr11 74620457 74620640 -76162913 + (TG)n Simple_repeat Simple_repeat 1 176 0 231 315 0 31 chr11 74620662 74620789 -76162764 + (TG)n Simple_repeat Simple_repeat 2 124 0 239 158 0 18 chr11 74620809 74620866 -76162687 + (TG)n Simple_repeat Simple_repeat 1 56 0 192 40 0 0 chr11 74620976 74621001 -76162552 + (TG)n Simple_repeat Simple_repeat 2 26 0 621 262 18 36 chr11 74621176 74621397 -76162156 + MER20 DNA MER1_type 1 217 -2 368 324 57 28 chr11 74623143 74623304 -76160249 - MER5A DNA MER1_type -19 159 7 1266 282 13 24 chr11 74623638 74624092 -76159461 - L1MB8 LINE L1 -6 6172 5724 394 281 117 45 chr11 74624374 74624708 -76158845 - LTR16A1 LTR ERVL -99 358 1 181 263 103 61 chr11 74625190 74625403 -76158150 - L2 LINE L2 -224 3048 2827 273 75 0 0 chr11 74626300 74626340 -76157213 + (CAGCC)n Simple_repeat Simple_repeat 4 43 0 255 192 0 0 chr11 74627104 74627177 -76156376 + CT-rich Low_complexity Low_complexity 2 74 0 460 228 3 9 chr11 74627194 74627528 -76156025 + CT-rich Low_complexity Low_complexity 1 331 0 2683 187 88 102 chr11 74628767 74628993 -76154560 - L1MC4 LINE L1 -11 6333 6105 2170 128 3 6 chr11 74628993 74629306 -76154247 - AluSx SINE Alu 0 312 1 2683 187 88 102 chr11 74629306 74629370 -76154183 - L1MC4 LINE L1 -239 6105 6042 312 250 0 0 chr11 74629370 74629434 -76154119 - MER2 DNA MER2_type 0 345 282 2683 187 88 102 chr11 74629434 74629657 -76153896 - L1MC4 LINE L1 -302 6042 5817 2249 110 3 0 chr11 74629657 74629949 -76153604 - AluSp SINE Alu -15 298 6 2683 187 88 102 chr11 74629949 74630359 -76153194 - L1MC4 LINE L1 -527 5817 5359 1229 117 0 0 chr11 74630359 74630522 -76153031 - AluSg/x SINE Alu -18 294 132 321 219 0 0 chr11 74630688 74630752 -76152801 + L1MC2 LINE L1 6138 6201 -143 1005 256 32 63 chr11 74630932 74631343 -76152210 + MLT1J LTR MaLR 110 507 -4 795 178 0 8 chr11 74631499 74631628 -76151925 - FLAM_A SINE Alu -5 128 1 190 245 20 20 chr11 74632713 74632762 -76150791 - MIR3 SINE MIR -3 205 157 1493 194 96 18 chr11 74632889 74633285 -76150268 + MLT1C LTR MaLR 1 427 -40 * 1742 173 8 75 chr11 74633283 74633670 -76149883 - MLT2B3 LTR ERVL -193 361 1 379 328 109 46 chr11 74633670 74634369 -76149184 - L1M4 LINE L1 -1714 4432 3690 306 270 355 15 chr11 74634715 74634915 -76148638 - L1M4 LINE L1 -3105 3041 2774 894 263 74 3 chr11 74635104 74635389 -76148164 - MER46C DNA MER2_type 0 338 34 555 135 87 39 chr11 74635564 74635690 -76147863 + FLAM_A SINE Alu 18 142 0 1913 168 0 7 chr11 74635758 74636056 -76147497 - AluSx SINE Alu -16 296 1 1844 131 73 28 chr11 74636307 74636665 -76146888 - THE1C LTR MaLR 0 375 2 394 213 0 0 chr11 74636681 74636761 -76146792 + MER116 DNA Mariner 1 80 0 253 164 27 0 chr11 74636879 74636952 -76146601 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 1575 193 33 4 chr11 74637346 74637646 -76145907 + AluJo SINE Alu 1 308 0 2252 110 0 3 chr11 74638277 74638586 -76144967 + AluSc SINE Alu 1 308 -1 183 240 144 62 chr11 74638595 74638741 -76144812 + L2 LINE L2 2702 2859 -455 2011 125 4 7 chr11 74638758 74639067 -76144486 - AluSx SINE Alu 0 311 4 311 312 37 0 chr11 74639428 74639537 -76144016 + MIR SINE MIR 55 167 -95 258 264 28 42 chr11 74640522 74640666 -76142887 + L1MC/D LINE L1 5259 5400 -2408 307 327 50 70 chr11 74640780 74640979 -76142574 + L1MC/D LINE L1 5530 5724 -2084 915 308 187 13 chr11 74640995 74641692 -76141861 + L1M4 LINE L1 3505 4331 -1815 230 81 27 0 chr11 74641692 74641729 -76141824 + (CA)n Simple_repeat Simple_repeat 1 38 0 751 311 130 63 chr11 74641760 74642083 -76141470 + L1M4 LINE L1 4400 4700 -1446 3286 56 0 7 chr11 74642083 74642494 -76141059 + L1PA5 LINE L1 5747 6154 0 751 311 130 63 chr11 74642494 74642909 -76140644 + L1M4 LINE L1 4700 5206 -940 412 181 0 0 chr11 74642912 74642984 -76140569 + MLT1B LTR MaLR 114 185 -205 333 98 59 0 chr11 74643089 74643140 -76140413 + MLT1K LTR MaLR 133 186 -204 1530 190 24 67 chr11 74643253 74643627 -76139926 + MLT1A2 LTR MaLR 1 358 -16 1263 164 21 59 chr11 74643922 74644209 -76139344 + MLT1B LTR MaLR 1 276 -114 312 247 200 13 chr11 74645160 74645310 -76138243 - MER5B DNA MER1_type 0 178 1 719 243 86 69 chr11 74645805 74646224 -76137329 + MLT1K LTR MaLR 143 568 -20 246 238 59 30 chr11 74646854 74646955 -76136598 + MIR SINE MIR 33 136 -72 2007 137 29 0 chr11 74647035 74647379 -76136174 + MLT1B LTR MaLR 1 354 -36 184 250 74 81 chr11 74647396 74647544 -76136009 + L2 LINE L2 2902 3048 -224 485 235 6 0 chr11 74647559 74647738 -76135815 + (CA)n Simple_repeat Simple_repeat 1 180 0 543 237 3 0 chr11 74647782 74648085 -76135468 + (CA)n Simple_repeat Simple_repeat 1 304 0 1003 185 63 125 chr11 74649246 74649629 -76133924 - MLT1B LTR MaLR -10 380 18 22 35 0 0 chr11 74649881 74649910 -76133643 + AT_rich Low_complexity Low_complexity 1 29 0 900 223 22 62 chr11 74650323 74650597 -76132956 + MLT1A2 LTR MaLR 112 374 0 1646 153 8 8 chr11 74650667 74650922 -76132631 + AluJo SINE Alu 1 255 -57 579 127 0 0 chr11 74650923 74651002 -76132551 + AluJ/FLAM SINE Alu 10 88 -224 654 284 109 47 chr11 74653551 74653956 -76129597 + LTR16A1 LTR ERVL 27 456 -1 1796 220 18 8 chr11 74654027 74654409 -76129144 + MLT1B LTR MaLR 5 390 0 240 342 75 0 chr11 74656155 74656275 -76127278 + MIR SINE MIR 87 215 -47 2135 92 0 0 chr11 74656544 74656848 -76126705 + AluSx SINE Alu 1 284 -28 243 0 0 0 chr11 74656892 74656919 -76126634 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 349 322 122 36 chr11 74657434 74657769 -76125784 + L2 LINE L2 2947 3310 -3 566 383 63 20 chr11 74658114 74658605 -76124948 - ERVL LTR ERVL -912 4742 4231 327 78 0 0 chr11 74658607 74658658 -76124895 + (TG)n Simple_repeat Simple_repeat 2 52 0 1858 156 3 0 chr11 74658658 74658941 -76124612 - AluJb SINE Alu -28 284 1 256 339 88 16 chr11 74658968 74659160 -76124393 - ERVL LTR ERVL -3005 2759 2554 440 323 40 36 chr11 74659188 74659411 -76124142 + L1MEc LINE L1 79 302 -6094 1688 283 43 30 chr11 74659874 74660966 -76122587 + L1MEc LINE L1 666 1813 -4583 1848 312 41 33 chr11 74660970 74661702 -76121851 - ERVL LTR ERVL -3205 2559 1819 255 61 0 0 chr11 74661702 74661735 -76121818 + (TTAA)n Simple_repeat Simple_repeat 1 33 0 1848 312 41 33 chr11 74661735 74661756 -76121797 - ERVL LTR ERVL -3945 1819 1800 384 381 0 0 chr11 74662043 74662177 -76121376 - ERVL LTR ERVL -4362 634 501 288 309 36 0 chr11 74662501 74662585 -76120968 - ERVL LTR ERVL -4887 109 23 229 321 9 9 chr11 74662628 74662737 -76120816 - LTR16C LTR ERVL -24 467 359 999 265 42 117 chr11 74664510 74664702 -76118851 - Charlie4a DNA MER1_type -1453 508 303 1950 108 0 0 chr11 74664702 74664987 -76118566 + AluSx SINE Alu 25 309 0 2016 120 0 23 chr11 74664987 74665295 -76118258 + AluSx SINE Alu 2 302 -10 999 265 42 117 chr11 74665295 74665606 -76117947 - Charlie4a DNA MER1_type -1656 305 41 196 305 34 0 chr11 74668545 74668604 -76114949 + MIR SINE MIR 195 255 -7 703 314 25 46 chr11 74668665 74668782 -76114771 - L2 LINE L2 -85 3228 3110 2176 85 0 0 chr11 74668782 74669098 -76114455 + AluSg SINE Alu 1 316 0 703 314 25 46 chr11 74669098 74669480 -76114073 - L2 LINE L2 -203 3110 2741 389 265 66 7 chr11 74669566 74669793 -76113760 + MLT1I LTR MaLR 117 401 -8 1099 270 111 36 chr11 74669798 74670294 -76113259 - L2 LINE L2 -662 2652 2120 2170 90 0 0 chr11 74670722 74671024 -76112529 - AluSc SINE Alu 0 302 1 713 219 60 42 chr11 74671414 74671467 -76112086 + L1MD3 LINE L1 7777 7828 -167 1997 154 64 14 chr11 74671467 74671824 -76111729 - THE1C LTR MaLR 0 375 1 713 219 60 42 chr11 74671824 74671954 -76111599 + L1MD3 LINE L1 7828 7967 -28 2048 113 3 23 chr11 74671954 74672255 -76111298 + AluSx SINE Alu 1 295 -17 713 219 60 42 chr11 74672255 74672285 -76111268 + L1MD3 LINE L1 7967 7995 0 480 335 82 77 chr11 74672314 74672540 -76111013 + L1ME LINE L1 3762 3985 -2161 1766 165 0 10 chr11 74672540 74672843 -76110710 - AluJb SINE Alu -12 300 1 480 335 82 77 chr11 74672843 74672871 -76110682 + L1ME LINE L1 3985 4011 -2135 941 215 0 17 chr11 74672871 74673048 -76110505 + FAM SINE Alu 2 175 0 480 335 82 77 chr11 74673048 74673543 -76110010 + L1ME LINE L1 4011 4554 -1592 253 241 0 0 chr11 74673556 74673614 -76109939 - MER63 DNA MER1_type -24 1036 979 2089 83 4 0 chr11 74673643 74673919 -76109634 + AluSc SINE Alu 1 277 -32 901 62 8 8 chr11 74673922 74674052 -76109501 + (GGAA)n Simple_repeat Simple_repeat 3 132 0 908 57 8 0 chr11 74674428 74674551 -76109002 + (GGAA)n Simple_repeat Simple_repeat 1 124 0 285 211 189 0 chr11 74674554 74674644 -76108909 - MER63 DNA MER1_type -328 734 2 1796 142 40 13 chr11 74674719 74675022 -76108531 - AluJb SINE Alu -1 311 1 844 154 19 6 chr11 74675082 74675244 -76108309 - L1MA9 LINE L1 -106 6206 6043 362 291 134 15 chr11 74675263 74675344 -76108209 + HAL1b LINE L1 1191 1261 -87 1977 124 3 10 chr11 74675344 74675690 -76107863 - AluSq SINE Alu 0 313 3 362 291 134 15 chr11 74675690 74675742 -76107811 + HAL1b LINE L1 1261 1340 -8 25 0 0 0 chr11 74675761 74675786 -76107767 + AT_rich Low_complexity Low_complexity 1 25 0 2075 120 0 7 chr11 74675923 74676232 -76107321 + AluSx SINE Alu 1 307 -5 303 363 66 41 chr11 74676325 74676642 -76106911 + L1ME LINE L1 5258 5582 -539 363 212 111 0 chr11 74676810 74676909 -76106644 + MER103 DNA DNA 55 164 -2 2123 88 3 36 chr11 74676992 74677299 -76106254 - AluSc SINE Alu -12 297 1 352 307 159 16 chr11 74677423 74677612 -76105941 - L3 LINE CR1 -865 712 497 255 239 28 14 chr11 74678115 74678187 -76105366 + (CACCC)n Simple_repeat Simple_repeat 1 73 0 282 95 0 0 chr11 74678218 74678260 -76105293 + (CA)n Simple_repeat Simple_repeat 1 42 0 1488 111 60 0 chr11 74678578 74678795 -76104758 - MER30 DNA MER1_type 0 230 1 2254 107 0 0 chr11 74678876 74679176 -76104377 + AluSx SINE Alu 1 300 -12 523 297 131 9 chr11 74680439 74680661 -76102892 - MIR SINE MIR 0 262 14 1430 234 100 34 chr11 74680787 74681295 -76102258 - MLT1F LTR MaLR 0 542 1 505 319 81 12 chr11 74681564 74681884 -76101669 + L2 LINE L2 1436 1777 -1537 927 241 40 20 chr11 74682458 74682707 -76100846 - MLT1J LTR MaLR -256 255 2 352 258 82 82 chr11 74683402 74683489 -76100064 - L1ME4a LINE L1 0 6121 6035 2155 73 3 93 chr11 74683489 74683832 -76099721 + AluSx SINE Alu 1 312 0 352 258 82 82 chr11 74683832 74683938 -76099615 - L1ME4a LINE L1 -85 6036 5928 326 146 0 0 chr11 74684127 74684182 -76099371 - LTR67 LTR ERVL -13 544 490 924 286 99 9 chr11 74684486 74684575 -76098978 + L1MB7 LINE L1 4358 4438 -1708 237 33 0 0 chr11 74684575 74684605 -76098948 + (CA)n Simple_repeat Simple_repeat 2 31 0 924 286 99 9 chr11 74684605 74684949 -76098604 + L1MB7 LINE L1 4438 4830 -1316 481 212 44 22 chr11 74684950 74685087 -76098466 + L1MA9 LINE L1 6115 6254 -58 1843 156 3 0 chr11 74685235 74685530 -76098023 + AluJo SINE Alu 1 296 -16 2177 207 63 12 chr11 74685545 74686052 -76097501 + L1MB7 LINE L1 5652 6184 0 319 294 67 8 chr11 74686167 74686286 -76097267 + MIR SINE MIR 114 239 -23 392 255 157 0 chr11 74687672 74687814 -76095739 - MIR SINE MIR -36 226 58 241 286 0 0 chr11 74688005 74688061 -76095492 + MIR SINE MIR 84 139 -123 23 33 0 0 chr11 74692515 74692545 -76091008 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr11 74692761 74692782 -76090771 + AT_rich Low_complexity Low_complexity 1 21 0 211 102 20 20 chr11 74693355 74693404 -76090149 + (CCCCCG)n Simple_repeat Simple_repeat 2 50 0 21 57 0 0 chr11 74694365 74694400 -76089153 + GC_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr11 74694894 74694924 -76088629 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr11 74695086 74695125 -76088428 + GC_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr11 74695600 74695624 -76087929 + GC_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr11 74695707 74695728 -76087825 + GC_rich Low_complexity Low_complexity 1 21 0 192 156 26 0 chr11 74702215 74702259 -76081294 + MIR SINE MIR 101 144 -118 234 62 0 0 chr11 74703548 74703580 -76079973 + (GGA)n Simple_repeat Simple_repeat 2 33 0 279 54 0 0 chr11 74705110 74705147 -76078406 + (CA)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chr11 74706111 74706131 -76077422 + (TTA)n Simple_repeat Simple_repeat 3 22 0 500 164 68 75 chr11 74706913 74707059 -76076494 - MER20 DNA MER1_type -53 166 22 2325 111 42 28 chr11 74708858 74709217 -76074336 - THE1B LTR MaLR 0 364 1 183 250 18 0 chr11 74711109 74711165 -76072388 - L2 LINE L2 -63 3209 3153 737 231 126 0 chr11 74711195 74711394 -76072159 - MER58A DNA MER1_type 0 224 1 355 256 0 0 chr11 74711394 74711472 -76072081 - MIR SINE MIR -124 138 61 372 297 125 8 chr11 74711738 74711866 -76071687 + MIR SINE MIR 4 146 -116 184 342 0 40 chr11 74711986 74712062 -76071491 + MIR SINE MIR 178 250 -12 329 228 89 10 chr11 74712237 74712338 -76071215 + MLT1K LTR MaLR 36 144 -444 2358 54 10 0 chr11 74712773 74713068 -76070485 - AluY SINE Alu -13 298 1 774 236 129 102 chr11 74713691 74714014 -76069539 - MLT1C LTR MaLR -5 462 122 1815 123 3 62 chr11 74714014 74714323 -76069230 - AluSg SINE Alu -19 291 1 774 236 129 102 chr11 74714323 74714449 -76069104 - MLT1C LTR MaLR -345 122 1 2273 141 0 18 chr11 74715349 74715690 -76067863 + MER1B DNA MER1_type 3 337 0 1464 172 92 3 chr11 74716314 74716662 -76066891 + MLT1B LTR MaLR 1 379 -11 285 337 112 0 chr11 74716931 74717100 -76066453 - MLT1L LTR MaLR -104 511 324 295 219 37 24 chr11 74717542 74717624 -76065929 + GA-rich Low_complexity Low_complexity 3 85 0 392 268 45 18 chr11 74717929 74718041 -76065512 - L1ME4a LINE L1 -1 6120 6006 1996 149 0 0 chr11 74718214 74718522 -76065031 + AluSx SINE Alu 1 308 -4 375 326 138 11 chr11 74719246 74719427 -76064126 + MIR SINE MIR 43 246 -16 24 0 0 0 chr11 74719492 74719516 -76064037 + AT_rich Low_complexity Low_complexity 1 24 0 227 122 24 0 chr11 74720973 74721014 -76062539 + MLT1A1 LTR MaLR 266 307 -58 290 209 118 55 chr11 74721027 74721084 -76062469 + MIR SINE MIR 139 191 -71 2334 92 0 0 chr11 74721084 74721387 -76062166 + AluSx SINE Alu 1 303 -9 290 209 118 55 chr11 74721387 74721439 -76062114 + MIR SINE MIR 191 255 -7 186 71 0 0 chr11 74722341 74722369 -76061184 + (A)n Simple_repeat Simple_repeat 1 28 0 2228 109 0 0 chr11 74723235 74723538 -76060015 - AluSg SINE Alu -7 303 1 384 268 218 3 chr11 74723869 74724056 -76059497 - MIR SINE MIR 0 262 42 875 237 116 14 chr11 74724332 74724784 -76058769 + MLT1F1 LTR MaLR 1 567 0 2011 134 3 3 chr11 74725140 74725438 -76058115 - AluSx SINE Alu -10 302 5 383 318 93 0 chr11 74725761 74725900 -76057653 + MIR3 SINE MIR 5 157 -51 295 369 49 0 chr11 74725900 74726022 -76057531 - MER5A DNA MER1_type -1 188 61 951 153 31 12 chr11 74726030 74726193 -76057360 - FRAM SINE Alu 0 166 1 2336 65 10 0 chr11 74726204 74726494 -76057059 - AluY SINE Alu -18 293 1 193 321 0 19 chr11 74726502 74726555 -76056998 - MER5B DNA MER1_type -123 55 4 380 293 165 0 chr11 74726807 74726971 -76056582 + MIR SINE MIR 64 254 -8 184 200 25 0 chr11 74727002 74727042 -76056511 - MIR SINE MIR -5 257 217 2292 70 10 0 chr11 74727986 74728287 -76055266 + AluSx SINE Alu 6 309 -3 189 0 0 0 chr11 74728585 74728606 -76054947 + (A)n Simple_repeat Simple_repeat 1 21 0 269 248 14 6 chr11 74729070 74729157 -76054396 + MIR SINE MIR 61 146 -62 330 260 146 38 chr11 74730237 74730525 -76053028 - L1ME4a LINE L1 -206 5915 5597 697 174 0 49 chr11 74730533 74730589 -76052964 + L1MA4A LINE L1 6102 6159 -144 2440 82 0 0 chr11 74730589 74730894 -76052659 - AluSq SINE Alu -8 305 1 697 174 0 49 chr11 74730894 74730981 -76052572 + L1MA4A LINE L1 6159 6238 -65 1732 157 18 0 chr11 74730984 74731265 -76052288 + AluJo SINE Alu 1 286 -26 423 56 28 0 chr11 74731315 74731387 -76052166 + L1MA4A LINE L1 6225 6298 -5 636 186 55 43 chr11 74731538 74731570 -76051983 - L1MC2 LINE L1 0 7768 7738 2133 100 0 0 chr11 74731570 74731875 -76051678 + AluSg SINE Alu 1 305 0 636 186 55 43 chr11 74731875 74732187 -76051366 - L1MC2 LINE L1 -30 7738 6135 1103 77 7 0 chr11 74732189 74732344 -76051209 + (TTTC)n Simple_repeat Simple_repeat 2 157 0 1166 156 0 35 chr11 74732353 74732552 -76051001 - AluJo SINE Alu -36 276 85 2122 147 0 0 chr11 74732561 74732873 -76050680 - AluSx SINE Alu 0 312 1 2493 55 0 0 chr11 74733769 74734080 -76049473 - AluY SINE Alu 0 311 1 443 298 27 58 chr11 74734726 74734914 -76048639 + MIR SINE MIR 19 200 -62 2197 118 0 3 chr11 74735674 74735980 -76047573 - AluSq SINE Alu -8 305 1 1267 286 76 0 chr11 74736456 74736875 -76046678 + MLT1J LTR MaLR 27 477 -34 2251 80 17 0 chr11 74736998 74737297 -76046256 - AluY SINE Alu -7 304 1 204 40 0 0 chr11 74737299 74737324 -76046229 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 2123 92 0 0 chr11 74737324 74737607 -76045946 - AluY SINE Alu -28 283 1 913 344 44 50 chr11 74737664 74738188 -76045365 - L1M4 LINE L1 -2682 3464 2944 1958 110 7 0 chr11 74738203 74738485 -76045068 - AluY SINE Alu -27 284 1 418 351 45 8 chr11 74738587 74738855 -76044698 + MER113 DNA MER1_type? 242 519 -2 1906 133 4 0 chr11 74738855 74739134 -76044419 + AluSx SINE Alu 29 308 -4 1734 238 56 44 chr11 74740417 74740967 -76042586 - MLT1G LTR MaLR -3 587 31 1235 243 74 21 chr11 74741382 74741801 -76041752 - MER113 DNA MER1_type? -34 487 47 302 291 34 81 chr11 74741875 74742023 -76041530 - MIR SINE MIR -80 182 42 863 128 13 13 chr11 74742774 74742930 -76040623 + MLT1A1 LTR MaLR 1 156 -209 1015 98 201 11 chr11 74742931 74743115 -76040438 + AluSg1 SINE Alu 1 219 -90 1948 105 0 0 chr11 74743115 74743382 -76040171 + AluSg SINE Alu 32 298 -12 1040 152 0 0 chr11 74743383 74743541 -76040012 + AluSg/x SINE Alu 133 290 -19 291 118 20 0 chr11 74743542 74743593 -76039960 + MLT1A1 LTR MaLR 150 201 -164 430 106 0 0 chr11 74743620 74743686 -76039867 + MSTA LTR MaLR 1 66 -362 231 122 0 0 chr11 74743684 74743725 -76039828 + Alu SINE Alu 257 297 -4 * 204 333 18 45 chr11 74743908 74744019 -76039534 - L2 LINE L2 -23 3249 3142 780 258 68 11 chr11 74744210 74744489 -76039064 + LTR16A1 LTR ERVL 161 455 -2 1315 216 50 30 chr11 74744697 74745130 -76038423 + MLT1C LTR MaLR 4 459 -8 210 279 66 44 chr11 74745153 74745289 -76038264 - L2 LINE L2 -336 2977 2839 1052 264 185 9 chr11 74745333 74745798 -76037755 + MLT1H1 LTR MaLR 8 554 -1 1509 167 0 4 chr11 74746451 74746690 -76036863 - AluJo SINE Alu -74 238 1 2277 82 6 13 chr11 74746733 74747048 -76036505 + AluSp SINE Alu 1 313 0 742 182 53 5 chr11 74747262 74747568 -76035985 + MER44D DNA MER2_type 103 527 -78 1876 117 47 3 chr11 74747620 74747920 -76035633 + AluSq SINE Alu 1 313 0 368 317 86 0 chr11 74747920 74748061 -76035492 + L1M4 LINE L1 1042 3234 -1312 194 268 0 54 chr11 74749577 74749633 -76033920 + MIR3 SINE MIR 104 156 -52 210 327 56 19 chr11 74749980 74750087 -76033466 + MIR SINE MIR 48 158 -104 334 233 124 47 chr11 74750414 74750543 -76033010 + L2 LINE L2 3172 3310 -3 1688 146 56 17 chr11 74750792 74751079 -76032474 - AluJo SINE Alu -14 298 1 325 278 52 10 chr11 74751208 74751305 -76032248 + MIR SINE MIR 49 149 -113 2243 95 13 0 chr11 74752030 74752334 -76031219 + AluSx SINE Alu 5 312 0 225 362 123 18 chr11 74752338 74752687 -76030866 - L2 LINE L2 -208 3105 2714 187 329 26 0 chr11 74752748 74752824 -76030729 + L2 LINE L2 3173 3250 -22 297 285 90 74 chr11 74753514 74753738 -76029815 - L1ME4a LINE L1 -3 6118 5886 1951 106 0 0 chr11 74753738 74754003 -76029550 - AluSc SINE Alu -7 302 38 297 285 90 74 chr11 74754003 74754101 -76029452 - L1ME4a LINE L1 -235 5886 5791 2300 104 7 0 chr11 74754145 74754454 -76029099 - AluSx SINE Alu -1 311 1 1285 256 122 24 chr11 74754465 74754988 -76028565 - L1MB2 LINE L1 0 6171 5604 2207 104 13 0 chr11 74754988 74755297 -76028256 - AluSp SINE Alu 0 313 1 1285 256 122 24 chr11 74755297 74755323 -76028230 - L1MB2 LINE L1 -567 5604 5582 200 135 27 0 chr11 74755428 74755465 -76028088 + (CTTTG)n Simple_repeat Simple_repeat 5 42 0 198 273 0 36 chr11 74756819 74756874 -76026679 - MIR SINE MIR -140 122 70 331 300 84 16 chr11 74757490 74757680 -76025873 + L2 LINE L2 2549 2751 -563 1773 78 4 0 chr11 74757680 74757912 -76025641 + AluSg SINE Alu 1 233 -77 204 125 0 0 chr11 74758100 74758132 -76025421 + (A)n Simple_repeat Simple_repeat 1 32 0 2345 69 0 0 chr11 74758350 74758640 -76024913 - AluY SINE Alu -21 290 1 2165 115 0 6 chr11 74758712 74759026 -76024527 - AluSx SINE Alu 0 312 1 259 278 155 32 chr11 74759027 74759214 -76024339 - L1ME LINE L1 -331 5831 5622 953 221 48 63 chr11 74759222 74759339 -76024214 + MLT1H1 LTR MaLR 168 285 -270 261 0 0 0 chr11 74759339 74759368 -76024185 + (GA)n Simple_repeat Simple_repeat 2 30 0 189 0 0 0 chr11 74759369 74759390 -76024163 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 953 221 48 63 chr11 74759390 74759664 -76023889 + MLT1H1 LTR MaLR 284 555 0 1256 39 17 17 chr11 74760277 74760457 -76023096 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 562 212 11 17 chr11 74760461 74760640 -76022913 + CT-rich Low_complexity Low_complexity 2 179 0 436 227 31 23 chr11 74761214 74761342 -76022211 + MIR SINE MIR 66 194 -68 897 152 0 0 chr11 74762178 74762329 -76021224 + AluJb SINE Alu 162 312 0 235 284 0 0 chr11 74763206 74763273 -76020280 + MIR SINE MIR 46 112 -150 2550 109 27 8 chr11 74763766 74764134 -76019419 + THE1C LTR MaLR 1 375 0 348 284 42 37 chr11 74764155 74764370 -76019183 + L2 LINE L2 2236 2451 -863 273 200 33 0 chr11 74764509 74764569 -76018984 + L2 LINE L2 2755 2816 -498 245 250 94 0 chr11 74764722 74764818 -76018735 + MLT1G LTR MaLR 451 555 -35 338 323 0 24 chr11 74765743 74765867 -76017686 + MIR SINE MIR 70 190 -72 270 0 0 0 chr11 74766124 74766154 -76017399 + (CA)n Simple_repeat Simple_repeat 1 30 0 218 321 131 15 chr11 74768021 74768158 -76015395 + MIR SINE MIR 110 262 0 2069 124 0 0 chr11 74768306 74768615 -76014938 - AluSx SINE Alu 0 309 1 467 277 78 86 chr11 74768635 74768959 -76014594 - L1ME3A LINE L1 -70 6100 5778 650 75 0 0 chr11 74768959 74769039 -76014514 + MADE1 DNA Mariner 1 80 0 467 277 78 86 chr11 74769039 74769122 -76014431 - L1ME3A LINE L1 -392 5778 5696 780 171 0 0 chr11 74769196 74769313 -76014240 + AluJb SINE Alu 135 251 -61 1300 108 5 0 chr11 74769373 74769559 -76013994 + AluSq SINE Alu 123 309 -4 198 0 0 0 chr11 74769636 74769658 -76013895 + (T)n Simple_repeat Simple_repeat 1 22 0 2342 78 0 0 chr11 74769818 74770112 -76013441 - AluY SINE Alu -14 297 4 2293 110 0 0 chr11 74770513 74770823 -76012730 + AluSx SINE Alu 1 310 -2 2051 204 110 30 chr11 74772436 74772937 -76010616 + MLT1F LTR MaLR 2 542 0 2137 109 0 0 chr11 74772937 74773252 -76010301 + AluSx SINE Alu 1 315 0 312 271 141 26 chr11 74773271 74773463 -76010090 - MIR SINE MIR -12 250 37 2131 103 0 7 chr11 74773580 74773880 -76009673 - AluSq SINE Alu -15 298 1 1370 248 65 36 chr11 74773929 74774210 -76009343 - MLT1C LTR MaLR -1 466 166 2206 118 0 6 chr11 74774210 74774524 -76009029 - AluSq SINE Alu -1 312 1 1370 248 65 36 chr11 74774524 74774690 -76008863 - MLT1C LTR MaLR -301 166 6 413 288 29 22 chr11 74774736 74774875 -76008678 - MIR SINE MIR -80 182 43 384 280 115 28 chr11 74775605 74775787 -76007766 - L2 LINE L2 -3 3310 3113 723 88 0 0 chr11 74775803 74775894 -76007659 + AluS SINE Alu 11 101 -212 1872 183 69 32 chr11 74776286 74776723 -76006830 - MLT1C LTR MaLR -14 453 1 804 157 0 0 chr11 74776784 74776905 -76006648 + AluJb SINE Alu 1 121 -191 225 239 0 64 chr11 74777133 74777242 -76006311 + MER112 DNA MER1_type 80 181 -79 2127 106 24 0 chr11 74777253 74777545 -76006008 + AluSq SINE Alu 1 299 -14 23 0 0 0 chr11 74780145 74780168 -76003385 + AT_rich Low_complexity Low_complexity 1 23 0 2030 102 65 0 chr11 74781086 74781418 -76002135 - AluSx SINE Alu 0 351 1 990 152 86 10 chr11 74781443 74781641 -76001912 - L1MB5 LINE L1 0 6174 5962 2318 70 0 3 chr11 74781712 74782013 -76001540 + AluY SINE Alu 1 300 -11 205 309 65 58 chr11 74782092 74782189 -76001364 + MIR3 SINE MIR 54 154 -54 1612 189 10 7 chr11 74782189 74782491 -76001062 - AluJb SINE Alu -9 303 1 205 309 65 58 chr11 74782491 74782532 -76001021 + MIR3 SINE MIR 154 193 -15 2004 136 0 22 chr11 74783482 74783661 -75999892 - AluSx SINE Alu -2 310 140 2039 121 3 7 chr11 74783661 74783958 -75999595 - AluSc SINE Alu -13 296 1 2004 136 0 22 chr11 74783958 74784095 -75999458 - AluSx SINE Alu -172 140 1 2373 82 0 0 chr11 74784274 74784579 -75998974 - AluSx SINE Alu -7 305 1 192 77 0 0 chr11 74784975 74785001 -75998552 + (T)n Simple_repeat Simple_repeat 1 26 0 1096 72 0 0 chr11 74785104 74785242 -75998311 - AluSq/x SINE Alu -175 138 1 235 182 0 0 chr11 74785520 74785564 -75997989 - L1ME LINE L1 -368 5753 5710 2180 110 0 7 chr11 74785635 74785944 -75997609 - AluSx SINE Alu -5 307 1 270 274 12 95 chr11 74786341 74786509 -75997044 - L2 LINE L2 -1 3312 3159 2089 106 0 0 chr11 74786520 74786802 -75996751 + AluSq SINE Alu 30 311 -2 269 98 0 39 chr11 74786802 74786853 -75996700 + (GGAGAA)n Simple_repeat Simple_repeat 1 49 0 1658 153 35 14 chr11 74786856 74787138 -75996415 + AluJb SINE Alu 1 288 -24 226 227 0 0 chr11 74787266 74787310 -75996243 - MER91 DNA MER1_type -146 44 1 273 269 115 0 chr11 74787576 74787654 -75995899 - MIR SINE MIR -117 145 59 291 54 0 0 chr11 74788527 74788564 -75994989 + (T)n Simple_repeat Simple_repeat 1 37 0 743 109 0 0 chr11 74788706 74788807 -75994746 - AluS SINE Alu -210 102 2 857 209 23 0 chr11 74788809 74788981 -75994572 + MER58B DNA MER1_type 157 332 -9 2258 84 0 7 chr11 74789037 74789333 -75994220 - AluSg SINE Alu -16 294 1 257 226 0 0 chr11 74789340 74789402 -75994151 - L1ME LINE L1 -462 5659 5598 700 183 11 17 chr11 74789724 74789904 -75993649 + CT-rich Low_complexity Low_complexity 1 179 0 1792 152 4 0 chr11 74789912 74790189 -75993364 - AluSx SINE Alu -2 310 33 2253 78 3 19 chr11 74790189 74790495 -75993058 - AluY SINE Alu -8 303 1 602 289 98 18 chr11 74790495 74790772 -75992781 - Charlie2a DNA MER1_type -603 2259 1961 1207 177 4 9 chr11 74790783 74791009 -75992544 - AluJb SINE Alu -5 307 83 832 276 78 51 chr11 74791047 74791098 -75992455 - Charlie2a DNA MER1_type -978 1884 1836 1938 121 4 0 chr11 74791098 74791409 -75992144 - AluSg SINE Alu 0 312 1 832 276 78 51 chr11 74791409 74791765 -75991788 - Charlie2a DNA MER1_type -1026 1836 1465 1329 124 18 14 chr11 74791916 74792134 -75991419 - MER30 DNA MER1_type -8 222 4 2064 106 20 3 chr11 74792134 74792426 -75991127 + AluSq SINE Alu 1 297 -16 1939 105 3 14 chr11 74792428 74792744 -75990809 + AluSp SINE Alu 14 313 0 249 294 120 84 chr11 74793553 74793910 -75989643 + L2 LINE L2 2897 3266 -6 1890 155 0 3 chr11 74794381 74794678 -75988875 - AluSx SINE Alu -16 296 1 2180 104 0 3 chr11 74794709 74795008 -75988545 + AluSq SINE Alu 1 298 -15 217 139 25 38 chr11 74795546 74795625 -75987928 + CT-rich Low_complexity Low_complexity 3 80 0 412 273 47 0 chr11 74796435 74796563 -75986990 - MLT1B LTR MaLR -3 387 254 386 290 77 32 chr11 74796613 74796834 -75986719 - MLT1B LTR MaLR -270 235 5 260 237 240 9 chr11 74797177 74797400 -75986153 - L2 LINE L2 -278 3035 2759 328 245 85 11 chr11 74797821 74797915 -75985638 + Tigger7 DNA MER2_type 8 108 -625 2154 102 3 19 chr11 74797917 74798232 -75985321 - AluSx SINE Alu -2 310 1 550 131 12 0 chr11 74798454 74798536 -75985017 - Tigger7 DNA MER2_type 0 2487 2405 1484 136 13 0 chr11 74798536 74798772 -75984781 + MER2 DNA MER2_type 1 239 -106 182 239 239 0 chr11 74799158 74799246 -75984307 - MIR SINE MIR -94 168 60 278 275 58 33 chr11 74799657 74799777 -75983776 + MIR SINE MIR 70 192 -70 227 217 0 72 chr11 74800318 74800387 -75983166 + GA-rich Low_complexity Low_complexity 3 66 0 185 179 77 0 chr11 74800431 74800470 -75983083 + MIR3 SINE MIR 119 160 -48 181 226 0 81 chr11 74800908 74800970 -75982583 - L2 LINE L2 -371 2943 2887 235 274 0 0 chr11 74800975 74801026 -75982527 + CT-rich Low_complexity Low_complexity 3 53 0 288 298 12 54 chr11 74801048 74801216 -75982337 - L2 LINE L2 -35 3278 3118 394 379 0 6 chr11 74801310 74801484 -75982069 + (CA)n Simple_repeat Simple_repeat 2 174 0 300 91 0 0 chr11 74801544 74801588 -75981965 + (CA)n Simple_repeat Simple_repeat 1 44 0 2095 87 3 17 chr11 74802424 74802722 -75980831 - AluSx SINE Alu -18 294 1 810 117 0 0 chr11 74802898 74803009 -75980544 - AluSq/x SINE Alu -200 112 2 307 220 0 0 chr11 74803264 74803323 -75980230 - L2 LINE L2 0 3272 3214 323 181 241 17 chr11 74803654 74803770 -75979783 + MLT1J1 LTR MaLR 1 142 -304 442 205 152 60 chr11 74803835 74803986 -75979567 + MLT1I LTR MaLR 278 409 0 1887 130 0 33 chr11 74804591 74804891 -75978662 - AluJb SINE Alu -21 291 2 295 235 43 17 chr11 74804926 74805041 -75978512 - L1ME4a LINE L1 -49 6072 5955 189 0 0 0 chr11 74805173 74805194 -75978359 + (GTTTG)n Simple_repeat Simple_repeat 1 21 0 30 0 0 0 chr11 74805304 74805334 -75978219 + AT_rich Low_complexity Low_complexity 1 30 0 2125 123 7 0 chr11 74805451 74805759 -75977794 - AluSq SINE Alu -3 310 1 716 126 36 0 chr11 74805772 74805883 -75977670 - L1MC1 LINE L1 0 6333 6219 3046 163 15 21 chr11 74805883 74806457 -75977096 - L1MB3 LINE L1 -43 6140 5568 194 140 35 0 chr11 74806457 74806514 -75977039 + T-rich Low_complexity Low_complexity 3 61 0 435 287 16 0 chr11 74806791 74806913 -75976640 + MIR SINE MIR 113 236 -26 385 376 15 10 chr11 74807214 74807416 -75976137 - MIR SINE MIR -54 208 6 213 299 58 46 chr11 74807825 74807912 -75975641 - L2 LINE L2 -213 3059 2972 1723 159 13 7 chr11 74809072 74809373 -75974180 - AluJo SINE Alu -9 303 1 1838 148 0 3 chr11 74809413 74809696 -75973857 - AluSx SINE Alu -30 282 1 344 254 9 26 chr11 74809703 74809817 -75973736 - Charlie2 DNA MER1_type -178 2684 2573 2296 103 0 0 chr11 74809877 74810188 -75973365 - AluSx SINE Alu -1 311 1 2187 106 0 0 chr11 74810245 74810538 -75973015 + AluSc SINE Alu 1 293 -16 2306 244 70 55 chr11 74810552 74811227 -75972326 + L1MDa LINE L1 1327 1990 -4550 1759 124 0 8 chr11 74811227 74811485 -75972068 + AluSg SINE Alu 1 256 -54 1691 184 26 3 chr11 74811488 74811793 -75971760 + AluJo SINE Alu 1 312 0 2306 244 70 55 chr11 74811793 74812099 -75971454 + L1MDa LINE L1 1991 2327 -4213 2139 175 6 6 chr11 74812117 74812465 -75971088 - MER7A DNA MER2_type 0 346 1 778 282 195 21 chr11 74812801 74813237 -75970316 + MLT1K LTR MaLR 69 580 -8 192 321 36 0 chr11 74813348 74813404 -75970149 - MIR SINE MIR -63 145 88 747 186 18 30 chr11 74813548 74813715 -75969838 + MER53 DNA DNA 23 187 -2 389 215 61 86 chr11 74814099 74814124 -75969429 + MER5B DNA MER1_type 20 44 -134 2306 84 0 0 chr11 74814124 74814420 -75969133 - AluY SINE Alu -15 296 1 389 215 61 86 chr11 74814420 74814485 -75969068 + MER5B DNA MER1_type 44 109 -69 1498 152 39 21 chr11 74814485 74814848 -75968705 + AluJo SINE Alu 1 312 0 389 215 61 86 chr11 74814848 74814919 -75968634 + MER5B DNA MER1_type 109 178 0 293 344 42 47 chr11 74814980 74815172 -75968381 - MIR SINE MIR -39 223 33 388 285 54 15 chr11 74815974 74816104 -75967449 + MER20 DNA MER1_type 1 135 -84 234 154 0 0 chr11 74817180 74817219 -75966334 + L3 LINE CR1 1426 1464 -113 1735 170 0 10 chr11 74818043 74818349 -75965204 + AluJb SINE Alu 1 303 -9 277 261 46 7 chr11 74818357 74818510 -75965043 + (TA)n Simple_repeat Simple_repeat 1 159 0 1860 99 0 40 chr11 74819368 74819483 -75964070 + AluSq SINE Alu 21 139 -174 2145 118 0 9 chr11 74819483 74819798 -75963755 + AluSq SINE Alu 1 312 -1 1860 99 0 40 chr11 74819798 74819954 -75963599 + AluSq SINE Alu 139 281 -32 890 204 44 6 chr11 74820055 74820236 -75963317 + MER53 DNA DNA 1 188 -1 475 295 51 11 chr11 74820441 74820621 -75962932 - MIR3 SINE MIR -6 202 15 365 297 27 54 chr11 74821248 74821396 -75962157 - L2 LINE L2 0 3313 3170 868 256 97 51 chr11 74821927 74822299 -75961254 + MLT1C LTR MaLR 8 404 -63 2088 126 0 3 chr11 74822299 74822608 -75960945 - AluSg SINE Alu -2 308 1 868 256 97 51 chr11 74822608 74822668 -75960885 + MLT1C LTR MaLR 404 460 -7 2282 107 0 0 chr11 74822823 74823131 -75960422 + AluSx SINE Alu 1 308 -4 263 267 37 29 chr11 74823135 74823264 -75960289 + MIR SINE MIR 50 181 -27 256 164 18 18 chr11 74823850 74823905 -75959648 + MIR SINE MIR 63 117 -145 1349 190 85 45 chr11 74824012 74824173 -75959380 + MLT1B LTR MaLR 8 161 -229 1983 120 0 0 chr11 74824173 74824477 -75959076 + AluJb SINE Alu 1 304 0 1349 190 85 45 chr11 74824477 74824667 -75958886 + MLT1B LTR MaLR 161 374 -16 2176 82 3 10 chr11 74825022 74825359 -75958194 - AluSp SINE Alu 0 313 1 1920 118 38 3 chr11 74825361 74825649 -75957904 - AluSx SINE Alu -14 298 1 198 0 0 0 chr11 74825854 74825876 -75957677 + (T)n Simple_repeat Simple_repeat 1 22 0 180 0 0 0 chr11 74826080 74826100 -75957453 + (T)n Simple_repeat Simple_repeat 1 20 0 1593 151 4 0 chr11 74826100 74826345 -75957208 - AluJb SINE Alu -66 246 1 312 275 216 30 chr11 74826411 74826578 -75956975 + MIR SINE MIR 37 234 -28 338 291 69 53 chr11 74827290 74827479 -75956074 + MIR SINE MIR 23 214 -48 258 211 70 28 chr11 74827638 74827709 -75955844 + L1MB3 LINE L1 5688 5761 -2047 2018 127 23 0 chr11 74827844 74828143 -75955410 - AluSx SINE Alu -6 306 1 728 175 13 13 chr11 74828143 74828297 -75955256 + L1MB3 LINE L1 6029 6182 -1 375 235 0 20 chr11 74828378 74828480 -75955073 - L1ME2 LINE L1 -34 6113 6014 270 0 0 0 chr11 74828495 74828525 -75955028 + (T)n Simple_repeat Simple_repeat 1 30 0 28 48 0 0 chr11 74828556 74828598 -75954955 + GC_rich Low_complexity Low_complexity 1 42 0 2399 71 0 0 chr11 74828783 74829093 -75954460 - AluY SINE Alu -1 310 1 299 244 219 8 chr11 74830285 74830408 -75953145 - L2 LINE L2 0 3313 3165 339 321 99 19 chr11 74831302 74831464 -75952089 - L1ME2 LINE L1 -211 5893 5719 525 281 91 90 chr11 74831747 74831837 -75951716 - L1ME2 LINE L1 -1543 4586 4498 2123 108 7 0 chr11 74831837 74832125 -75951428 + AluSc SINE Alu 3 292 -17 525 281 91 90 chr11 74832125 74832802 -75950751 - L1ME2 LINE L1 -1631 4498 3818 1962 128 0 0 chr11 74832988 74833284 -75950269 + AluSx SINE Alu 13 308 0 2070 125 14 0 chr11 74833288 74833583 -75949970 + AluSg SINE Alu 1 299 -11 4673 220 65 89 chr11 74833592 74835182 -75948371 - L1M4 LINE L1 -1793 4353 2727 816 180 93 0 chr11 74835182 74835332 -75948221 - FRAM SINE Alu -13 163 1 4673 220 65 89 chr11 74835332 74835575 -75947978 - L1M4 LINE L1 -3419 2727 2420 2117 108 3 3 chr11 74835575 74835880 -75947673 - AluSg SINE Alu -5 305 1 4673 220 65 89 chr11 74835880 74835972 -75947581 - L1M4 LINE L1 -3726 2420 2327 324 265 96 58 chr11 74835982 74836295 -75947258 - L1ME2 LINE L1 -5165 954 630 387 218 58 0 chr11 74836306 74836393 -75947160 - MIR SINE MIR -81 181 90 727 211 48 0 chr11 74836850 74837016 -75946537 - L1MB5 LINE L1 -13 6161 5988 236 273 0 0 chr11 74837373 74837428 -75946125 - MER5A DNA MER1_type -126 63 9 1293 241 118 24 chr11 74837564 74837988 -75945565 - MLT1C LTR MaLR 0 467 4 191 340 21 0 chr11 74838188 74838282 -75945271 + L2 LINE L2 2941 3036 -236 2352 69 0 13 chr11 74838336 74838639 -75944914 - AluY SINE Alu -12 299 1 324 336 146 33 chr11 74838671 74839403 -75944150 + L2 LINE L2 2396 3221 -92 1059 233 91 64 chr11 74839431 74839756 -75943797 + MLT1C LTR MaLR 1 343 -124 1730 177 73 44 chr11 74839756 74840169 -75943384 - MSTC LTR MaLR 0 428 4 1059 233 91 64 chr11 74840169 74840281 -75943272 + MLT1C LTR MaLR 343 450 -17 396 56 0 42 chr11 74844103 74844174 -75939379 + (TTCCC)n Simple_repeat Simple_repeat 5 72 0 378 129 0 0 chr11 74844785 74844847 -75938706 + (TCCC)n Simple_repeat Simple_repeat 4 65 0 193 326 42 42 chr11 74846377 74846521 -75937032 + L2 LINE L2 3122 3265 -7 255 296 62 45 chr11 74846533 74846712 -75936841 - L1ME4a LINE L1 -1 6120 5939 971 220 33 67 chr11 74846997 74847297 -75936256 - MLT1A2 LTR MaLR -80 294 5 1546 150 11 31 chr11 74847775 74848062 -75935491 + AluJo SINE Alu 2 282 -30 804 151 0 0 chr11 74848125 74848251 -75935302 - FLAM_C SINE Alu -17 126 1 1070 214 21 54 chr11 74848466 74848615 -75934938 - L1MB3 LINE L1 -82 6101 5964 2053 107 3 7 chr11 74848615 74848928 -75934625 - AluSp SINE Alu 0 313 1 1070 214 21 54 chr11 74848928 74849058 -75934495 - L1MB3 LINE L1 -219 5964 5831 566 111 0 0 chr11 74849968 74850049 -75933504 - L1MC2 LINE L1 -11 6333 6253 1868 138 0 13 chr11 74850076 74850374 -75933179 + AluJb SINE Alu 1 294 -18 381 73 18 0 chr11 74850376 74850431 -75933122 - MSTA LTR MaLR -372 56 1 3169 161 44 32 chr11 74850431 74850578 -75932975 - L1MC2 LINE L1 -89 6255 6111 2050 121 23 3 chr11 74850578 74850884 -75932669 - AluSx SINE Alu 0 312 1 3169 161 44 32 chr11 74850884 74851396 -75932157 - L1MC2 LINE L1 -233 6111 5588 298 283 211 12 chr11 74851777 74851943 -75931610 - LTR16C LTR ERVL -3 488 290 565 281 172 3 chr11 74852208 74852493 -75931060 + L2 LINE L2 420 752 -2562 311 267 114 15 chr11 74852891 74853022 -75930531 + L2 LINE L2 1637 1780 -1534 183 313 66 30 chr11 74853180 74853378 -75930175 + L2 LINE L2 2093 2297 -1017 283 288 110 56 chr11 74853559 74853984 -75929569 + L2 LINE L2 2657 3110 -203 785 299 84 13 chr11 74853988 74854296 -75929257 - MLT1J2 LTR MaLR -3 447 118 272 279 58 0 chr11 74854442 74854528 -75929025 + L2 LINE L2 3185 3275 -38 180 0 0 0 chr11 74854673 74854693 -75928860 + (TA)n Simple_repeat Simple_repeat 2 21 0 429 20 0 0 chr11 74854694 74854744 -75928809 + (GA)n Simple_repeat Simple_repeat 1 50 0 2049 116 0 0 chr11 74854745 74855022 -75928531 - AluSx SINE Alu -35 277 1 1214 170 0 5 chr11 74855462 74855662 -75927891 - AluJo SINE Alu -27 285 87 325 198 115 0 chr11 74855690 74855786 -75927767 - L1ME4a LINE L1 -41 6080 5974 234 329 0 12 chr11 74855792 74855877 -75927676 + (TG)n Simple_repeat Simple_repeat 2 85 0 218 302 0 57 chr11 74855827 74855917 -75927636 + (CATATA)n Simple_repeat Simple_repeat 3 88 -14 * 1610 138 86 0 chr11 74855917 74856185 -75927368 - AluSg SINE Alu -19 291 1 218 302 0 57 chr11 74856185 74856200 -75927353 + (CATATA)n Simple_repeat Simple_repeat 88 102 0 2053 115 0 0 chr11 74856391 74856679 -75926874 + AluY SINE Alu 14 301 -10 1453 197 42 0 chr11 74856820 74857104 -75926449 - AluJo SINE Alu -16 296 1 356 329 114 20 chr11 74857644 74858045 -75925508 - L2 LINE L2 -38 3275 2820 204 255 0 0 chr11 74859031 74859078 -75924475 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 345 313 15 17 chr11 74859413 74859552 -75924001 + MIR SINE MIR 1 138 -70 229 226 0 32 chr11 74860091 74860153 -75923400 - MLT1L LTR MaLR -414 201 142 208 323 174 6 chr11 74860403 74860564 -75922989 - MIR SINE MIR -19 243 56 1667 156 141 87 chr11 74860815 74861150 -75922403 + MSTA LTR MaLR 1 363 -65 2483 74 0 0 chr11 74861150 74861461 -75922092 + AluY SINE Alu 1 311 0 1667 156 141 87 chr11 74861461 74861528 -75922025 + MSTA LTR MaLR 363 425 -3 5825 179 43 7 chr11 74861533 74862914 -75920639 + MSTA-int LTR MaLR 3 1625 -26 1957 156 57 13 chr11 74863003 74863387 -75920166 + MSTA LTR MaLR 1 401 -27 1805 147 0 63 chr11 74863387 74863774 -75919779 - AluJb SINE Alu 0 366 1 461 353 98 60 chr11 74864514 74864903 -75918650 + HAL1 LINE L1 882 1292 -1215 2512 109 94 10 chr11 74864903 74865298 -75918255 - MSTA LTR MaLR 0 428 1 461 353 98 60 chr11 74865298 74865358 -75918195 + HAL1 LINE L1 1292 1348 -1159 1026 203 20 44 chr11 74865437 74865733 -75917820 - L1MA9 LINE L1 -33 6279 5991 423 259 61 0 chr11 74865766 74865913 -75917640 + HAL1 LINE L1 1403 1558 -949 270 0 0 0 chr11 74866133 74866163 -75917390 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 186 360 0 0 chr11 74866163 74866213 -75917340 - L2 LINE L2 -82 3231 3182 180 354 122 0 chr11 74866505 74866686 -75916867 - L2 LINE L2 -639 2675 2473 352 227 47 0 chr11 74866715 74866817 -75916736 - L1MB8 LINE L1 -228 5950 5837 1043 161 5 16 chr11 74867088 74867278 -75916275 - MSTC LTR MaLR 0 428 241 2100 161 48 0 chr11 74867278 74867684 -75915869 + MSTB LTR MaLR 1 364 0 1270 161 8 35 chr11 74867684 74867936 -75915617 - MSTC LTR MaLR -183 245 1 1012 111 74 16 chr11 74868271 74868460 -75915093 - MSTA LTR MaLR -224 204 5 396 321 19 26 chr11 74868573 74868727 -75914826 + MIR SINE MIR 36 187 -60 25 0 0 0 chr11 74868895 74868920 -75914633 + AT_rich Low_complexity Low_complexity 1 25 0 2263 116 0 0 chr11 74868961 74869264 -75914289 - AluSx SINE Alu -9 303 1 234 242 0 45 chr11 74869742 74869808 -75913745 + L3 LINE CR1 1406 1468 -109 268 273 7 14 chr11 74869891 74870030 -75913523 + GA-rich Low_complexity Low_complexity 1 138 0 191 300 0 0 chr11 74873030 74873080 -75910473 + MIR SINE MIR 104 153 -55 186 306 24 59 chr11 74873490 74873575 -75909978 + L2 LINE L2 3191 3272 0 255 181 23 192 chr11 74874167 74874344 -75909209 + MER53 DNA DNA 5 151 -38 826 182 0 0 chr11 74874634 74874782 -75908771 - L1MA9 LINE L1 0 6312 6165 192 40 0 0 chr11 74874782 74874807 -75908746 + (TG)n Simple_repeat Simple_repeat 2 26 0 882 292 103 0 chr11 74874859 74875198 -75908355 + L1ME2 LINE L1 5585 5958 -206 358 194 18 115 chr11 74875208 74875373 -75908180 + MER53 DNA DNA 24 172 -17 1190 226 45 52 chr11 74875437 74875509 -75908044 + L1ME3 LINE L1 3933 4004 -2158 189 0 0 0 chr11 74875509 74875530 -75908023 + (CA)n Simple_repeat Simple_repeat 2 22 0 1190 226 45 52 chr11 74875530 74876004 -75907549 + L1ME3 LINE L1 4004 6162 0 924 188 64 81 chr11 74875983 74876340 -75907213 + L1MB7 LINE L1 4812 5162 -984 * 3559 176 71 17 chr11 74876401 74876448 -75907105 + L1MB7 LINE L1 5127 5170 -1014 1980 137 0 0 chr11 74876448 74876740 -75906813 + AluSx SINE Alu 11 302 -10 3559 176 71 17 chr11 74876740 74877689 -75905864 + L1MB7 LINE L1 5170 6184 0 2448 136 86 10 chr11 74878049 74878446 -75905107 + MSTA LTR MaLR 2 428 0 540 245 130 50 chr11 74879047 74879247 -75904306 + MER20 DNA MER1_type 1 216 -3 353 214 14 14 chr11 74879413 74879483 -75904070 - HAL1b LINE L1 -7 1341 1272 2212 155 43 55 chr11 74879563 74880002 -75903551 - Tigger2a DNA MER2_type 0 434 1 288 280 0 0 chr11 74880349 74880424 -75903129 - MER2 DNA MER2_type -2 343 269 359 136 0 15 chr11 74880569 74880635 -75902918 + Tigger2a DNA MER2_type 37 101 -333 * 843 176 33 22 chr11 74880634 74880816 -75902737 - MER2 DNA MER2_type -161 184 1 209 253 0 20 chr11 74882065 74882164 -75901389 + CT-rich Low_complexity Low_complexity 3 99 0 274 274 21 0 chr11 74882165 74882260 -75901293 + (TCCA)n Simple_repeat Simple_repeat 4 100 0 230 217 14 0 chr11 74882266 74882335 -75901218 + CT-rich Low_complexity Low_complexity 1 70 0 278 250 38 0 chr11 74882383 74882463 -75901090 + CT-rich Low_complexity Low_complexity 1 83 0 214 308 260 0 chr11 74883257 74883361 -75900192 + MIR SINE MIR 15 145 -117 1446 276 86 6 chr11 74884013 74884480 -75899073 - L1MC3 LINE L1 -13 7772 7269 239 331 11 43 chr11 74884731 74884915 -75898638 + C-rich Low_complexity Low_complexity 3 180 0 282 302 22 44 chr11 74884973 74885155 -75898398 + C-rich Low_complexity Low_complexity 3 180 0 517 182 58 0 chr11 74886439 74886560 -75896993 - MER20 DNA MER1_type -35 184 57 442 206 172 39 chr11 74886776 74886956 -75896597 + MLT1K LTR MaLR 368 571 -17 225 94 0 0 chr11 74887640 74887672 -75895881 + (TG)n Simple_repeat Simple_repeat 1 32 0 3254 188 38 5 chr11 74889162 74889791 -75893762 + L1MC2 LINE L1 5695 6344 0 1625 224 57 2 chr11 74890370 74890843 -75892710 - MLT1D LTR MaLR -6 499 1 558 270 273 0 chr11 74890877 74891221 -75892332 + L2 LINE L2 2538 2975 -339 187 358 133 12 chr11 74891259 74891432 -75892121 + L2 LINE L2 3107 3300 -13 245 321 158 12 chr11 74891874 74892114 -75891439 + L2 LINE L2 2981 3255 -17 265 182 182 34 chr11 74895130 74895218 -75888335 + MIR SINE MIR 87 188 -20 193 188 21 21 chr11 74895679 74895727 -75887826 - MIR SINE MIR -112 150 103 204 245 0 19 chr11 74895866 74895919 -75887634 + CT-rich Low_complexity Low_complexity 3 54 0 211 334 133 19 chr11 74897822 74898001 -75885552 + MIR SINE MIR 11 212 -50 191 359 51 0 chr11 74899054 74899132 -75884421 - MIR3 SINE MIR -50 158 77 797 256 29 25 chr11 74899609 74899851 -75883702 - MIR SINE MIR -5 257 15 1688 215 32 5 chr11 74900057 74900434 -75883119 + MLT1B LTR MaLR 1 387 -3 959 139 4 0 chr11 74900465 74900730 -75882823 + (TCCA)n Simple_repeat Simple_repeat 1 266 0 2537 115 22 0 chr11 74900734 74901090 -75882463 + THE1B LTR MaLR 1 364 0 1017 150 0 0 chr11 74901105 74901285 -75882268 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 190 366 35 17 chr11 74903239 74903411 -75880142 - L2 LINE L2 -176 3096 2922 2278 109 0 0 chr11 74903843 74904155 -75879398 - AluSx SINE Alu 0 312 1 1636 111 35 108 chr11 74904251 74904567 -75878986 - AluSx SINE Alu -19 293 1 313 208 128 48 chr11 74905169 74905294 -75878259 + MER45A DNA AcHobo 38 172 -6 1379 220 101 20 chr11 74907220 74907565 -75875988 + MLT1A2 LTR MaLR 2 374 0 222 306 14 0 chr11 74908665 74908737 -75874816 + (CAATT)n Simple_repeat Simple_repeat 3 75 0 185 309 0 0 chr11 74909007 74909062 -75874491 + L2 LINE L2 3122 3176 -96 1285 266 102 21 chr11 74909335 74909805 -75873748 - MLT1H LTR MaLR -5 544 37 344 232 0 0 chr11 74910361 74910430 -75873123 + MIR3 SINE MIR 112 180 -28 269 203 31 0 chr11 74910748 74910812 -75872741 + MER45 DNA AcHobo 29 94 -946 202 62 62 0 chr11 74911009 74911041 -75872512 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 237 33 0 0 chr11 74911162 74911192 -75872361 + (CTGGGG)n Simple_repeat Simple_repeat 4 33 0 456 258 127 60 chr11 74912674 74912926 -75870627 - MER46C DNA MER2_type -58 280 12 232 351 14 0 chr11 74913030 74913104 -75870449 + MIR SINE MIR 117 191 -71 1684 183 3 3 chr11 74913104 74913394 -75870159 + AluJb SINE Alu 1 290 -22 196 305 50 35 chr11 74913692 74913833 -75869720 + L2 LINE L2 2927 3069 -203 191 268 18 0 chr11 74913914 74913970 -75869583 + MER5A DNA MER1_type 77 133 -56 604 299 39 10 chr11 74914300 74914504 -75869049 + MIR SINE MIR 32 241 -21 404 284 46 0 chr11 74914576 74914685 -75868868 + L2 LINE L2 3180 3293 -20 198 103 0 0 chr11 74914691 74914720 -75868833 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 180 304 87 0 chr11 74914725 74914794 -75868759 + L2 LINE L2 3196 3270 -2 736 297 66 32 chr11 74915958 74916305 -75867248 + MLT1I LTR MaLR 40 398 -11 23 33 0 0 chr11 74916712 74916742 -75866811 + AT_rich Low_complexity Low_complexity 1 30 0 787 200 35 6 chr11 74917324 74917494 -75866059 + MER5B DNA MER1_type 1 175 -3 387 305 90 12 chr11 74918735 74918902 -75864651 + MIR SINE MIR 43 222 -40 284 272 39 0 chr11 74919885 74919972 -75863581 + MIR SINE MIR 58 140 -68 353 316 47 11 chr11 74920522 74920712 -75862841 - MER117 DNA MER1_type 0 197 1 257 333 29 10 chr11 74920938 74921040 -75862513 - MER5A DNA MER1_type -80 109 6 1345 164 88 73 chr11 74921516 74922013 -75861540 - MLT1G1 LTR MaLR 0 590 9 371 249 5 137 chr11 74922201 74922406 -75861147 - MLT1G1-int LTR MaLR -233 1138 961 290 320 49 0 chr11 74922930 74923052 -75860501 - MLT1G1-int LTR MaLR -793 578 451 1548 275 52 38 chr11 74923059 74924211 -75859342 + L1ME LINE L1 10 1144 -4936 2171 123 0 0 chr11 74924211 74924512 -75859041 + AluSx SINE Alu 1 301 -11 1548 275 52 38 chr11 74924512 74925538 -75858015 + L1ME LINE L1 1144 3434 -2646 1786 192 132 11 chr11 74925540 74925974 -75857579 - MLT1D LTR MaLR -8 585 1 1239 247 119 45 chr11 74925974 74926484 -75857069 - MLT1G1 LTR MaLR -45 550 3 181 267 107 13 chr11 74927033 74927108 -75856445 - MIR3 SINE MIR -21 187 106 533 252 159 0 chr11 74927115 74927266 -75856287 - MER5A DNA MER1_type -5 184 10 2210 96 7 0 chr11 74927666 74927959 -75855594 + AluSx SINE Alu 1 295 -17 263 232 20 49 chr11 74928137 74928270 -75855283 - MIR SINE MIR -62 146 38 335 193 12 0 chr11 74928949 74929032 -75854521 + (TG)n Simple_repeat Simple_repeat 2 85 0 1507 191 12 7 chr11 74929253 74929567 -75853986 + MLT2D LTR ERVL 1 376 -38 354 98 0 0 chr11 74929567 74929618 -75853935 + (CA)n Simple_repeat Simple_repeat 1 51 0 1507 191 12 7 chr11 74929618 74929656 -75853897 + MLT2D LTR ERVL 376 412 -2 942 238 105 72 chr11 74930216 74930607 -75852946 - MLT1J LTR MaLR -107 404 1 200 290 178 9 chr11 74930820 74930927 -75852626 + MIR SINE MIR 18 142 -120 233 218 13 0 chr11 74931386 74931464 -75852089 + CT-rich Low_complexity Low_complexity 1 79 0 671 176 0 12 chr11 74931494 74931659 -75851894 + (TCCA)n Simple_repeat Simple_repeat 4 166 0 869 140 0 11 chr11 74931674 74931853 -75851700 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 736 121 52 35 chr11 74934884 74935000 -75848553 - FLAM_C SINE Alu -15 118 1 742 297 88 32 chr11 74935238 74935646 -75847907 - L2 LINE L2 0 3313 2883 2136 108 7 0 chr11 74935926 74936223 -75847330 + AluSx SINE Alu 1 299 -13 257 305 9 19 chr11 74936419 74936524 -75847029 - MIR SINE MIR -67 141 38 742 283 117 10 chr11 74936545 74936845 -75846708 + MLT1I LTR MaLR 18 349 -60 606 198 48 0 chr11 74936882 74937008 -75846545 + MER58B DNA MER1_type 175 306 -35 485 103 0 0 chr11 74937013 74937081 -75846472 + AluJ/FLAM SINE Alu 1 68 -244 807 115 25 16 chr11 74937181 74937303 -75846250 - AluSq/x SINE Alu -189 124 2 1800 201 27 29 chr11 74937328 74937736 -75845817 + L1MC2 LINE L1 5911 6317 -27 5030 160 21 32 chr11 74937741 74938409 -75845144 + L1MA7 LINE L1 5274 5929 -362 2013 123 0 26 chr11 74938409 74938717 -75844836 + AluSg SINE Alu 1 300 -10 5030 160 21 32 chr11 74938717 74939077 -75844476 + L1MA7 LINE L1 5929 6291 0 22 0 0 0 chr11 74939109 74939131 -75844422 + AT_rich Low_complexity Low_complexity 1 22 0 2186 104 3 7 chr11 74939356 74939655 -75843898 - AluSq SINE Alu -15 298 1 245 326 0 30 chr11 74940332 74940467 -75843086 + (TG)n Simple_repeat Simple_repeat 1 131 0 341 311 0 38 chr11 74940484 74940667 -75842886 + (TG)n Simple_repeat Simple_repeat 1 176 0 231 315 0 31 chr11 74940689 74940816 -75842737 + (TG)n Simple_repeat Simple_repeat 2 124 0 239 158 0 18 chr11 74940836 74940893 -75842660 + (TG)n Simple_repeat Simple_repeat 1 56 0 192 40 0 0 chr11 74941003 74941028 -75842525 + (TG)n Simple_repeat Simple_repeat 2 26 0 668 262 18 36 chr11 74941203 74941424 -75842129 + MER20 DNA MER1_type 1 217 -2 346 332 34 15 chr11 74943170 74943331 -75840222 - MER5A DNA MER1_type -19 159 7 1382 289 11 22 chr11 74943665 74944119 -75839434 - L1MB8 LINE L1 -6 6172 5724 541 284 114 42 chr11 74944401 74944735 -75838818 - LTR16A1 LTR ERVL -99 358 1 273 75 0 0 chr11 74946327 74946367 -75837186 + (CAGCC)n Simple_repeat Simple_repeat 4 43 0 255 192 0 0 chr11 74947131 74947204 -75836349 + CT-rich Low_complexity Low_complexity 2 74 0 460 228 3 9 chr11 74947221 74947555 -75835998 + CT-rich Low_complexity Low_complexity 1 331 0 1050 139 0 12 chr11 74947788 74947953 -75835600 - AluSg1 SINE Alu -146 163 1 2384 211 56 83 chr11 74947954 74948642 -75834911 - L1MDa LINE L1 -4539 2001 1296 2153 113 0 0 chr11 74948642 74948935 -75834618 - AluSc SINE Alu -16 293 1 2384 211 56 83 chr11 74948935 74948995 -75834558 - L1MDa LINE L1 -5244 1296 1236 2701 186 9 2 chr11 74948995 74949453 -75834100 - MER65C LTR ERV1 0 461 1 2040 118 3 20 chr11 74949460 74949765 -75833788 - AluJb SINE Alu -12 300 1 2384 211 56 83 chr11 74949765 74949965 -75833588 - L1MDa LINE L1 -5310 1230 1070 238 319 0 32 chr11 74949974 74950068 -75833485 + CT-rich Low_complexity Low_complexity 1 91 0 186 103 0 0 chr11 74950375 74950404 -75833149 + (TG)n Simple_repeat Simple_repeat 2 30 0 562 191 24 16 chr11 74950420 74950459 -75833094 + MLT1B LTR MaLR 8 45 -345 2051 131 0 0 chr11 74950459 74950756 -75832797 + AluSq SINE Alu 1 297 -16 562 191 24 16 chr11 74950756 74950842 -75832711 + MLT1B LTR MaLR 45 134 -256 331 264 123 19 chr11 74950853 74951008 -75832545 + L1MC5 LINE L1 7580 7750 -211 339 264 35 101 chr11 74951170 74951397 -75832156 + MLT1I LTR MaLR 170 381 -28 312 361 134 0 chr11 74951398 74951476 -75832077 + L1MC4a LINE L1 5863 5929 -1879 1692 162 4 0 chr11 74951476 74951742 -75831811 + AluJo SINE Alu 35 301 -11 312 361 134 0 chr11 74951742 74951901 -75831652 + L1MC4a LINE L1 5929 6132 -1676 288 0 0 0 chr11 74951916 74951948 -75831605 + (TG)n Simple_repeat Simple_repeat 2 33 0 451 246 24 16 chr11 74951958 74952084 -75831469 + MLT1B LTR MaLR 8 134 -256 243 198 50 40 chr11 74952155 74952256 -75831297 + L1MC5 LINE L1 7648 7749 -212 414 256 31 97 chr11 74952410 74952637 -75830916 + MLT1I LTR MaLR 170 381 -28 316 315 30 75 chr11 74952638 74952716 -75830837 + L1ME4a LINE L1 5863 5943 -178 1520 171 4 15 chr11 74952716 74952985 -75830568 + AluJo SINE Alu 35 300 -12 316 315 30 75 chr11 74952985 74953106 -75830447 + L1ME4a LINE L1 5943 6032 -89 234 227 0 0 chr11 74953159 74953203 -75830350 + (TG)n Simple_repeat Simple_repeat 2 45 0 555 204 15 23 chr11 74953212 74953344 -75830209 + MLT1B LTR MaLR 4 134 -256 1418 126 0 22 chr11 74953358 74953580 -75829973 - AluSg/x SINE Alu -8 304 88 2301 86 3 6 chr11 74954412 74954726 -75828827 + AluSq SINE Alu 1 313 0 322 309 0 0 chr11 74955340 74955424 -75828129 - MIR SINE MIR -75 187 104 1706 144 81 3 chr11 74955458 74955743 -75827810 + AluJb SINE Alu 1 307 -5 407 308 61 42 chr11 74957405 74957619 -75825934 - MIR SINE MIR -22 240 23 32 26 0 0 chr11 74958375 74958414 -75825139 + AT_rich Low_complexity Low_complexity 1 39 0 218 288 0 93 chr11 74958781 74958899 -75824654 - MIR SINE MIR -85 123 17 192 314 24 101 chr11 74959042 74959211 -75824342 + MIR SINE MIR 107 262 0 1231 114 0 0 chr11 74959345 74959521 -75824032 + AluSg/x SINE Alu 137 312 0 26 0 0 0 chr11 74959542 74959568 -75823985 + AT_rich Low_complexity Low_complexity 1 26 0 2109 91 14 7 chr11 74959669 74959955 -75823598 - AluSx SINE Alu -24 288 1 810 117 0 0 chr11 74960131 74960242 -75823311 - AluSq/x SINE Alu -201 112 2 307 220 0 0 chr11 74960497 74960556 -75822997 - L2 LINE L2 0 3272 3214 323 181 241 17 chr11 74960887 74961003 -75822550 + MLT1J1 LTR MaLR 1 142 -304 442 205 152 60 chr11 74961068 74961219 -75822334 + MLT1I LTR MaLR 278 409 0 1896 130 0 33 chr11 74961824 74962125 -75821428 - AluJb SINE Alu -20 292 2 279 244 43 17 chr11 74962160 74962275 -75821278 - L1ME4a LINE L1 -49 6072 5955 189 0 0 0 chr11 74962408 74962429 -75821124 + (GTTTG)n Simple_repeat Simple_repeat 1 21 0 30 0 0 0 chr11 74962539 74962569 -75820984 + AT_rich Low_complexity Low_complexity 1 30 0 2275 107 0 0 chr11 74962686 74962996 -75820557 - AluSq SINE Alu -3 310 1 835 136 0 12 chr11 74963287 74963542 -75820011 + (TG)n Simple_repeat Simple_repeat 1 251 0 1253 192 126 4 chr11 74963542 74963797 -75819756 - AluJb SINE Alu -26 286 1 2215 115 3 0 chr11 74963900 74964212 -75819341 - AluSq SINE Alu 0 313 1 22 0 0 0 chr11 74964511 74964533 -75819020 + AT_rich Low_complexity Low_complexity 1 22 0 410 273 27 33 chr11 74964883 74965033 -75818520 - L1ME4a LINE L1 -1 6120 5972 1648 182 6 13 chr11 74965033 74965378 -75818175 - AluJo SINE Alu 0 312 1 471 178 0 50 chr11 74965446 74965547 -75818006 - AluJ/FRAM SINE Alu -1 311 216 431 350 28 4 chr11 74965578 74965832 -75817721 - L1ME4a LINE L1 -254 5867 5608 2009 125 10 0 chr11 74965837 74966133 -75817420 - AluSx SINE Alu -13 299 1 351 0 0 0 chr11 74966138 74966177 -75817376 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 226 288 91 15 chr11 74966300 74966432 -75817121 - L1M2 LINE L1 -843 5469 5328 528 328 93 66 chr11 74966505 74966734 -75816819 - L1ME4a LINE L1 -893 5253 5032 2107 88 0 24 chr11 74966734 74967030 -75816523 - AluY SINE Alu -2 309 21 1964 106 34 0 chr11 74967039 74967332 -75816221 - AluSp SINE Alu -10 303 1 528 328 93 66 chr11 74967332 74968056 -75815497 - L1ME4a LINE L1 -1121 5025 4182 22 0 0 0 chr11 74969583 74969605 -75813948 + AT_rich Low_complexity Low_complexity 1 22 0 215 278 32 71 chr11 74970337 74970417 -75813136 + MIR SINE MIR 80 155 -107 2235 95 0 0 chr11 74970417 74970713 -75812840 + AluSx SINE Alu 1 296 -16 215 278 32 71 chr11 74970713 74970758 -75812795 + MIR SINE MIR 155 200 -62 383 277 69 0 chr11 74970797 74970927 -75812626 + MER113 DNA MER1_type? 56 194 -327 904 77 32 13 chr11 74971142 74971298 -75812255 + (TTTC)n Simple_repeat Simple_repeat 3 161 0 1663 129 3 28 chr11 74971299 74971586 -75811967 - AluSx SINE Alu -32 280 1 670 306 97 42 chr11 74972021 74972455 -75811098 + L2 LINE L2 2856 3313 0 355 175 0 56 chr11 74973403 74973529 -75810024 + (TTA)n Simple_repeat Simple_repeat 2 120 0 435 161 20 4 chr11 74973680 74973772 -75809781 + L1MA7 LINE L1 6166 6252 -39 1586 236 107 11 chr11 74974008 74974466 -75809087 + L1ME1 LINE L1 5662 6163 -3 302 329 70 13 chr11 74974546 74974704 -75808849 - MLT1K LTR MaLR -17 571 405 354 197 0 0 chr11 74974789 74974850 -75808703 - MLT1K LTR MaLR -327 261 201 2144 186 37 75 chr11 74974857 74975427 -75808126 + L1MC2 LINE L1 5797 6344 0 253 284 0 0 chr11 74975483 74975550 -75808003 + (TG)n Simple_repeat Simple_repeat 1 67 0 2220 101 0 0 chr11 74975709 74976005 -75807548 - AluSx SINE Alu -16 296 1 1662 171 19 118 chr11 74977051 74977484 -75806069 + MLT1B LTR MaLR 1 390 0 496 257 171 0 chr11 74977608 74977748 -75805805 + MIR SINE MIR 33 196 -66 180 125 0 0 chr11 74978239 74978271 -75805282 + (CTCA)n Simple_repeat Simple_repeat 2 33 0 1064 243 87 49 chr11 74978343 74978883 -75804670 + MLT1E1 LTR MaLR 2 504 -1 948 300 58 9 chr11 74979933 74980263 -75803290 - L1ME LINE L1 -394 5841 5496 494 241 26 36 chr11 74980270 74980465 -75803088 - L1ME LINE L1 -5142 1254 1062 421 328 0 11 chr11 74980846 74981023 -75802530 + (CA)n Simple_repeat Simple_repeat 2 176 0 223 250 29 29 chr11 74981001 74981069 -75802484 + (CATG)n Simple_repeat Simple_repeat 1 68 0 * 184 218 0 141 chr11 74981128 74981206 -75802347 + L2 LINE L2 3152 3218 -95 264 30 0 0 chr11 74981230 74981263 -75802290 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 196 325 167 9 chr11 74981456 74981570 -75801983 + L2 LINE L2 3138 3269 -3 902 258 64 19 chr11 74982681 74983042 -75800511 - L2 LINE L2 -798 2516 2140 266 262 65 10 chr11 74983465 74983585 -75799968 - MIR SINE MIR -66 142 16 1101 193 31 103 chr11 74985724 74986045 -75797508 + MLT1B LTR MaLR 4 301 -89 231 222 0 19 chr11 74986154 74986208 -75797345 - MIR SINE MIR -111 151 99 663 116 0 0 chr11 74986723 74986835 -75796718 + (GA)n Simple_repeat Simple_repeat 1 112 0 274 325 87 0 chr11 74987496 74987622 -75795931 - MIR SINE MIR -70 192 56 465 188 54 74 chr11 74988793 74988942 -75794611 + MLT1C LTR MaLR 65 210 -257 870 244 19 48 chr11 74989065 74989335 -75794218 + MLT1C LTR MaLR 191 452 -15 238 341 56 8 chr11 74989589 74989715 -75793838 - MLT1J LTR MaLR 0 511 380 2172 109 3 3 chr11 74989718 74990030 -75793523 + AluSq SINE Alu 1 312 -1 255 239 56 14 chr11 74990257 74990328 -75793225 - MLT1J LTR MaLR -337 174 101 735 241 10 55 chr11 74990387 74990586 -75792967 + Charlie1 DNA MER1_type 51 240 -2521 700 186 7 0 chr11 74990570 74990710 -75792843 + Charlie1 DNA MER1_type 2621 2761 0 * 2112 106 0 0 chr11 74990766 74991050 -75792503 + AluSx SINE Alu 1 284 -28 1909 91 4 0 chr11 74991050 74991302 -75792251 + AluSp SINE Alu 51 303 -10 331 298 77 10 chr11 74991567 74991671 -75791882 + MIR SINE MIR 36 146 -62 252 226 0 19 chr11 74993595 74993648 -75789905 + MLT1I LTR MaLR 358 409 0 284 0 28 0 chr11 74994517 74994553 -75789000 + (TG)n Simple_repeat Simple_repeat 2 38 0 2185 104 0 3 chr11 75044902 75045199 -75738354 - AluSq SINE Alu -17 296 1 1928 155 0 3 chr11 75045230 75045527 -75738026 + AluSx SINE Alu 1 296 -16 289 303 118 81 chr11 75045999 75046356 -75737197 - L2 LINE L2 -6 3266 2897 269 248 14 6 chr11 75047180 75047267 -75736286 + MIR SINE MIR 61 146 -62 330 260 146 38 chr11 75048347 75048635 -75734918 - L1ME4a LINE L1 -206 5915 5597 697 174 0 49 chr11 75048643 75048699 -75734854 + L1MA4A LINE L1 6102 6159 -144 2440 82 0 0 chr11 75048699 75049004 -75734549 - AluSq SINE Alu -8 305 1 697 174 0 49 chr11 75049004 75049091 -75734462 + L1MA4A LINE L1 6159 6238 -65 1732 157 18 0 chr11 75049094 75049375 -75734178 + AluJo SINE Alu 1 286 -26 423 56 28 0 chr11 75049425 75049497 -75734056 + L1MA4A LINE L1 6225 6298 -5 636 186 55 43 chr11 75049648 75049680 -75733873 - L1MC2 LINE L1 0 7768 7738 2133 100 0 0 chr11 75049680 75049985 -75733568 + AluSg SINE Alu 1 305 0 636 186 55 43 chr11 75049985 75050297 -75733256 - L1MC2 LINE L1 -30 7738 6135 1103 77 7 0 chr11 75050299 75050454 -75733099 + (TTTC)n Simple_repeat Simple_repeat 2 157 0 1166 156 0 35 chr11 75050463 75050662 -75732891 - AluJo SINE Alu -36 276 85 2122 147 0 0 chr11 75050671 75050983 -75732570 - AluSx SINE Alu 0 312 1 2499 48 0 6 chr11 75051877 75052190 -75731363 - AluY SINE Alu 0 311 1 443 298 27 58 chr11 75052836 75053024 -75730529 + MIR SINE MIR 19 200 -62 2197 118 0 3 chr11 75053784 75054090 -75729463 - AluSq SINE Alu -8 305 1 1267 286 76 0 chr11 75054566 75054985 -75728568 + MLT1J LTR MaLR 27 477 -34 381 296 128 15 chr11 75055383 75055579 -75727974 + MIR SINE MIR 28 245 -17 505 244 41 0 chr11 75055614 75055737 -75727816 - MER5A DNA MER1_type 0 189 62 1503 89 132 8 chr11 75055772 75056007 -75727546 + AluSg SINE Alu 1 264 -46 357 43 0 0 chr11 75056022 75056069 -75727484 + (CA)n Simple_repeat Simple_repeat 1 47 0 330 279 120 32 chr11 75056108 75056266 -75727287 + MIR SINE MIR 17 188 -74 201 74 0 0 chr11 75056328 75056355 -75727198 + (CAT)n Simple_repeat Simple_repeat 1 27 0 2202 164 32 84 chr11 75056897 75057524 -75726029 - L1MB7 LINE L1 -21 6163 5570 440 309 14 14 chr11 75057579 75057718 -75725835 + MIR SINE MIR 23 161 -101 336 235 20 20 chr11 75057823 75057921 -75725632 + LTR16C LTR ERVL 149 246 -245 443 314 129 16 chr11 75057934 75058189 -75725364 - L2 LINE L2 -119 3194 2911 953 130 10 26 chr11 75058549 75058850 -75724703 + (TGGA)n Simple_repeat Simple_repeat 1 297 0 830 148 23 0 chr11 75058868 75059044 -75724509 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 639 153 36 0 chr11 75059062 75059255 -75724298 + (TGGA)n Simple_repeat Simple_repeat 1 199 0 1144 195 101 0 chr11 75060529 75060806 -75722747 - L1MB3 LINE L1 -48 6135 5831 1192 141 6 0 chr11 75060812 75060989 -75722564 - AluSg/x SINE Alu -8 304 127 2244 106 3 0 chr11 75060999 75061311 -75722242 - AluSq SINE Alu 0 313 1 1817 96 3 73 chr11 75061316 75061639 -75721914 - AluSx SINE Alu 0 302 1 356 261 0 0 chr11 75061639 75061727 -75721826 - L1MB3 LINE L1 -343 5828 5741 2558 82 31 8 chr11 75061727 75062118 -75721435 + MLT2A1 LTR ERVL 1 400 -44 314 111 25 25 chr11 75062120 75062201 -75721352 + (TA)n Simple_repeat Simple_repeat 1 81 0 347 112 0 3 chr11 75062201 75062268 -75721285 + MLT2A2 LTR ERVL 399 453 0 850 231 15 5 chr11 75062268 75062471 -75721082 - L1MB3 LINE L1 -426 5745 5541 1832 226 24 13 chr11 75062982 75063433 -75720120 - MLT1C LTR MaLR -10 457 2 198 297 59 59 chr11 75063621 75063722 -75719831 + MIR SINE MIR 67 167 -95 494 92 0 11 chr11 75064517 75064604 -75718949 + (CA)n Simple_repeat Simple_repeat 1 86 0 2337 92 0 6 chr11 75066144 75066459 -75717094 + AluSq SINE Alu 1 313 0 223 203 68 17 chr11 75067483 75067542 -75716011 - MIR SINE MIR -62 146 85 1302 73 0 0 chr11 75068517 75068525 -75715028 + (TGGA)n Simple_repeat Simple_repeat 1 187 0 1302 73 0 0 chr11 75068525 75068704 -75714849 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 483 203 8 78 chr11 75069331 75069459 -75714094 - MLT1A2 LTR MaLR -41 324 215 1007 111 17 17 chr11 75069462 75069642 -75713911 + THE1C LTR MaLR 1 180 -195 829 121 58 35 chr11 75069830 75070004 -75713549 + THE1C LTR MaLR 187 364 0 494 154 34 11 chr11 75070039 75070214 -75713339 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 784 138 72 7 chr11 75070239 75070391 -75713162 - MLT1A2 LTR MaLR -212 162 1 273 133 112 28 chr11 75070409 75070552 -75713001 + (TTAA)n Simple_repeat Simple_repeat 1 155 0 220 149 0 60 chr11 75070664 75070731 -75712822 + (TAA)n Simple_repeat Simple_repeat 3 65 0 374 350 32 0 chr11 75070873 75070996 -75712557 + MER91B DNA MER1_type 45 171 -19 265 330 21 10 chr11 75071426 75071523 -75712030 - MER5B DNA MER1_type -72 106 9 186 365 123 8 chr11 75071790 75072104 -75711449 + L3 LINE CR1 1085 1475 -102 261 231 33 0 chr11 75072104 75072195 -75711358 - LTR33 LTR ERVL -29 492 399 336 246 117 23 chr11 75072340 75072511 -75711042 - LTR33 LTR ERVL -305 216 30 233 247 14 27 chr11 75074117 75074190 -75709363 + GA-rich Low_complexity Low_complexity 1 72 0 258 330 45 34 chr11 75075441 75075529 -75708024 + MIR SINE MIR 92 181 -27 301 354 85 22 chr11 75076050 75076273 -75707280 + L1MEd LINE L1 955 1191 -4928 1418 215 45 47 chr11 75076952 75077274 -75706279 - MER45B DNA AcHobo -546 1035 714 2277 84 7 0 chr11 75077274 75077572 -75705981 - AluSp SINE Alu -13 300 1 1955 144 3 10 chr11 75077574 75077879 -75705674 - AluSx SINE Alu -9 303 1 1418 215 45 47 chr11 75077879 75077957 -75705596 - MER45B DNA AcHobo -868 713 633 1228 241 108 18 chr11 75078004 75078440 -75705113 - MER45B DNA AcHobo -565 475 1 2069 89 41 0 chr11 75078815 75079207 -75704346 + AluSx SINE Alu 1 403 0 338 300 33 47 chr11 75079928 75080107 -75703446 - MIR SINE MIR -56 206 30 200 278 69 0 chr11 75080118 75080190 -75703363 - MIR SINE MIR -166 96 20 1976 198 8 60 chr11 75080399 75080885 -75702668 - L1MB5 LINE L1 -171 6003 5543 471 305 39 46 chr11 75080996 75081215 -75702338 + MIR SINE MIR 6 256 -6 250 333 69 14 chr11 75081292 75081436 -75702117 - MIR3 SINE MIR -49 159 8 254 285 19 89 chr11 75082057 75082206 -75701347 + MIR SINE MIR 25 161 -47 204 380 0 0 chr11 75082287 75082366 -75701187 - MIR3 SINE MIR -45 163 85 405 335 62 16 chr11 75082445 75082639 -75700914 - MIR SINE MIR -43 219 17 443 284 98 24 chr11 75082925 75083215 -75700338 + L2 LINE L2 2681 3009 -263 1114 252 103 33 chr11 75083255 75083680 -75699873 + MLT1C LTR MaLR 13 467 0 377 250 27 9 chr11 75083694 75083806 -75699747 + MER81 DNA DNA 1 114 0 271 305 110 8 chr11 75083951 75084069 -75699484 + L2 LINE L2 3184 3313 0 * 334 371 91 18 chr11 75084060 75084335 -75699218 + L3 LINE CR1 1276 1570 -7 2180 107 3 0 chr11 75084706 75085004 -75698549 + AluSx SINE Alu 1 299 -13 437 276 16 8 chr11 75085110 75085233 -75698320 - MLT1J LTR MaLR -202 309 186 274 318 68 38 chr11 75085339 75085471 -75698082 - MIR SINE MIR -40 222 87 1709 180 7 3 chr11 75086235 75086540 -75697013 + AluJo SINE Alu 1 306 -6 185 156 0 22 chr11 75086540 75086585 -75696968 + GA-rich Low_complexity Low_complexity 1 44 0 202 290 170 10 chr11 75087548 75087648 -75695905 - MIR SINE MIR -87 175 60 301 275 58 33 chr11 75088059 75088179 -75695374 + MIR SINE MIR 70 192 -70 270 284 14 0 chr11 75088656 75088730 -75694823 - L2 LINE L2 -204 3068 2994 266 111 37 19 chr11 75088843 75088897 -75694656 + Charlie2 DNA MER1_type 169 223 -2559 1961 105 3 14 chr11 75089167 75089483 -75694070 - AluSp SINE Alu 0 313 14 2089 106 20 3 chr11 75089485 75089777 -75693776 - AluSq SINE Alu -16 297 1 1243 124 18 14 chr11 75089777 75089995 -75693558 + MER30 DNA MER1_type 4 222 -8 745 279 78 51 chr11 75090146 75090502 -75693051 + Charlie2a DNA MER1_type 1465 1836 -1026 1969 121 4 0 chr11 75090502 75090813 -75692740 + AluSg SINE Alu 1 312 0 745 279 78 51 chr11 75090813 75090864 -75692689 + Charlie2a DNA MER1_type 1836 1884 -978 1205 178 9 9 chr11 75090902 75091127 -75692426 + AluJb SINE Alu 83 307 -5 775 246 154 60 chr11 75091138 75091415 -75692138 + Charlie2a DNA MER1_type 1961 2211 -651 2340 68 10 0 chr11 75091415 75091710 -75691843 + AluY SINE Alu 1 298 -13 775 246 154 60 chr11 75091710 75091861 -75691692 + Charlie2a DNA MER1_type 2211 2346 -516 2278 96 3 0 chr11 75091861 75092162 -75691391 - AluSx SINE Alu -10 302 1 775 246 154 60 chr11 75092162 75092219 -75691334 + Charlie2a DNA MER1_type 2346 2396 -466 2318 103 0 0 chr11 75092219 75092530 -75691023 + AluSx SINE Alu 1 311 -1 775 246 154 60 chr11 75092530 75092704 -75690849 + Charlie2a DNA MER1_type 2396 2684 -178 1879 148 0 3 chr11 75092711 75092994 -75690559 + AluSx SINE Alu 1 282 -30 1858 155 10 7 chr11 75093034 75093343 -75690210 + AluJo SINE Alu 1 310 -2 223 299 58 46 chr11 75094496 75094583 -75688970 + L2 LINE L2 2972 3059 -213 187 289 12 72 chr11 75094913 75094996 -75688557 - MIR SINE MIR -74 188 111 * 430 376 15 10 chr11 75094992 75095194 -75688359 + MIR SINE MIR 6 208 -54 459 287 16 0 chr11 75095495 75095617 -75687936 - MIR SINE MIR -26 236 113 194 140 35 0 chr11 75095894 75095951 -75687602 + A-rich Low_complexity Low_complexity 3 61 0 2895 159 16 21 chr11 75095951 75096529 -75687024 + L1MB3 LINE L1 5568 6142 -41 632 126 36 0 chr11 75096525 75096636 -75686917 + L1MC1 LINE L1 6219 6333 0 * 2315 63 0 33 chr11 75096649 75096950 -75686603 + AluY SINE Alu 1 291 -20 2322 68 3 7 chr11 75096996 75097291 -75686262 - AluSx SINE Alu -14 298 5 325 278 52 10 chr11 75098016 75098113 -75685440 - MIR SINE MIR -113 149 49 1688 146 56 17 chr11 75098242 75098529 -75685024 + AluJo SINE Alu 1 298 -14 334 233 124 47 chr11 75098778 75098907 -75684646 - L2 LINE L2 -3 3310 3172 210 327 56 19 chr11 75099234 75099341 -75684212 - MIR SINE MIR -104 158 48 194 268 0 54 chr11 75099688 75099744 -75683809 - MIR3 SINE MIR -52 156 104 1917 124 35 0 chr11 75102901 75103191 -75680362 - AluSq SINE Alu -13 300 1 543 339 0 6 chr11 75103380 75103551 -75680002 - MIR SINE MIR 0 262 93 914 193 42 28 chr11 75104577 75104790 -75678763 - MER20 DNA MER1_type -1 218 3 528 333 14 28 chr11 75105090 75105306 -75678247 + MIR SINE MIR 29 241 -21 322 298 38 23 chr11 75105298 75105421 -75678132 - MIR SINE MIR -101 161 37 315 292 49 49 chr11 75105421 75105565 -75677988 + MIR3 SINE MIR 4 147 -61 212 261 15 31 chr11 75107004 75107069 -75676484 + MIR SINE MIR 86 149 -113 2239 104 7 0 chr11 75107314 75107622 -75675931 + AluSg SINE Alu 1 310 0 251 203 29 43 chr11 75108206 75108275 -75675278 + MIR SINE MIR 82 149 -59 739 248 29 41 chr11 75108355 75108777 -75674776 - MLT1J LTR MaLR -57 454 1 2288 176 8 0 chr11 75310367 75310753 -75472800 - MLT1B LTR MaLR -1 389 1 1996 135 3 0 chr11 75311072 75311368 -75472185 + AluSx SINE Alu 1 297 -15 201 161 0 0 chr11 75311442 75311473 -75472080 + (TG)n Simple_repeat Simple_repeat 1 31 0 236 279 15 0 chr11 75311686 75311754 -75471799 - L1ME3 LINE L1 -2 6160 6092 777 112 0 0 chr11 75311817 75311924 -75471629 + AluSg/x SINE Alu 196 302 -8 433 120 13 13 chr11 75312726 75312801 -75470752 - L1MC2 LINE L1 -8 6336 6262 2119 125 3 3 chr11 75313855 75314166 -75469387 - AluSx SINE Alu -1 311 1 213 281 35 61 chr11 75314464 75314578 -75468975 - MER5B DNA MER1_type -62 116 6 433 293 19 25 chr11 75315076 75315233 -75468320 + Zaphod DNA AcHobo 275 430 -3601 1886 127 21 0 chr11 75316022 75316305 -75467248 - AluSx SINE Alu -10 302 14 1790 164 26 78 chr11 75317986 75318045 -75465508 - MLT1A1 LTR MaLR 0 365 304 2155 87 0 3 chr11 75318045 75318333 -75465220 + AluSq SINE Alu 22 308 -5 1790 164 26 78 chr11 75318333 75318658 -75464895 - MLT1A1 LTR MaLR -61 304 1 1204 114 59 25 chr11 75319126 75319328 -75464225 - THE1B LTR MaLR 0 364 156 2125 118 7 0 chr11 75319329 75319626 -75463927 + AluSx SINE Alu 1 299 -13 562 80 68 23 chr11 75319634 75319722 -75463831 - THE1B LTR MaLR -272 92 1 2028 117 0 0 chr11 75320680 75321042 -75462511 - AluSx SINE Alu 0 362 1 226 250 16 0 chr11 75322144 75322208 -75461345 - MLT1C-int LTR MaLR -488 883 819 2012 190 5 24 chr11 75322217 75322627 -75460926 - MLT1C-int LTR MaLR -710 661 260 476 84 12 36 chr11 75322618 75322701 -75460852 - MLT1C-int LTR MaLR -1620 115 35 * 222 118 0 0 chr11 75322730 75322764 -75460789 + (TA)n Simple_repeat Simple_repeat 2 35 0 * 366 23 0 0 chr11 75322763 75322806 -75460747 + (TG)n Simple_repeat Simple_repeat 2 44 0 1730 151 26 30 chr11 75322814 75323118 -75460435 + AluSx SINE Alu 1 303 -9 192 77 0 0 chr11 75323118 75323144 -75460409 + (TG)n Simple_repeat Simple_repeat 2 27 0 232 196 22 0 chr11 75323453 75323499 -75460054 - MLT1C-int LTR MaLR -1324 47 1 869 206 67 0 chr11 75323513 75323693 -75459860 - MLT2C1 LTR ERVL -56 341 150 1258 181 66 4 chr11 75324983 75325242 -75458311 + L1MC1 LINE L1 6059 6333 0 200 342 117 8 chr11 75325982 75326102 -75457451 + MIR SINE MIR 84 216 -46 2251 79 30 0 chr11 75326593 75326897 -75456656 + AluSq SINE Alu 1 313 0 585 280 28 14 chr11 75328024 75328235 -75455318 - LTR16C LTR ERVL -11 480 267 517 141 174 83 chr11 75329463 75329552 -75454001 + MLT1C LTR MaLR 336 407 -60 2212 68 41 0 chr11 75329552 75329847 -75453706 - AluY SINE Alu -4 307 1 517 141 174 83 chr11 75329847 75329878 -75453675 + MLT1C LTR MaLR 407 434 -33 305 323 10 0 chr11 75330212 75330308 -75453245 + (TGGG)n Simple_repeat Simple_repeat 2 98 0 660 236 0 0 chr11 75330316 75330494 -75453059 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 596 240 9 0 chr11 75330536 75330771 -75452782 + (TGGA)n Simple_repeat Simple_repeat 1 237 0 272 324 104 28 chr11 75330856 75331038 -75452515 - MIR SINE MIR -45 217 22 303 308 142 0 chr11 75331415 75331535 -75452018 + MIR SINE MIR 117 253 -9 1553 106 0 103 chr11 75331661 75331783 -75451770 - AluSc SINE Alu -56 253 175 2106 108 10 0 chr11 75331783 75332080 -75451473 - AluSp SINE Alu -13 300 1 1553 106 0 103 chr11 75332080 75332239 -75451314 - AluSc SINE Alu -134 175 1 1034 90 0 0 chr11 75332243 75332376 -75451177 - AluSq/x SINE Alu -180 133 1 304 302 67 13 chr11 75332897 75333046 -75450507 - MER5A DNA MER1_type -15 174 18 1379 222 106 39 chr11 75333132 75333565 -75449988 - MLT1C LTR MaLR 0 467 6 187 303 220 0 chr11 75333594 75333703 -75449850 + L2 LINE L2 3137 3269 -3 2219 108 0 6 chr11 75333751 75334065 -75449488 - AluSx SINE Alu 0 312 1 23 0 0 0 chr11 75335217 75335240 -75448313 + AT_rich Low_complexity Low_complexity 1 23 0 273 89 0 0 chr11 75335875 75335920 -75447633 + (TG)n Simple_repeat Simple_repeat 1 45 0 355 264 32 16 chr11 75337449 75337574 -75445979 - MER20B DNA MER1_type -3 780 654 2383 85 0 0 chr11 75337577 75337883 -75445670 + AluSq SINE Alu 1 306 -7 781 253 181 14 chr11 75338102 75338394 -75445159 - MER20B DNA MER1_type -375 408 68 232 156 31 62 chr11 75339083 75339147 -75444406 - MER76 LTR ERV -153 535 474 196 278 124 53 chr11 75339400 75339569 -75443984 - MIR SINE MIR -75 187 7 263 282 13 13 chr11 75340356 75340434 -75443119 + CT-rich Low_complexity Low_complexity 2 79 0 1287 161 107 43 chr11 75340586 75340866 -75442687 + AluJo SINE Alu 1 298 -14 417 54 0 0 chr11 75340993 75341049 -75442504 + (TTA)n Simple_repeat Simple_repeat 2 57 0 607 234 0 0 chr11 75341049 75341156 -75442397 - FLAM_C SINE Alu -27 116 10 1584 194 0 29 chr11 75341251 75341560 -75441993 + AluJo SINE Alu 1 300 -12 226 245 0 0 chr11 75343060 75343109 -75440444 + MIR SINE MIR 76 124 -84 249 386 47 8 chr11 75344581 75344708 -75438845 + L2 LINE L2 3137 3268 -4 228 385 18 0 chr11 75344846 75344955 -75438598 - MLT1K LTR MaLR -290 298 188 321 89 0 0 chr11 75345964 75346009 -75437544 + (TG)n Simple_repeat Simple_repeat 2 46 0 2334 79 7 0 chr11 75346013 75346318 -75437235 - AluY SINE Alu -4 307 1 424 192 19 0 chr11 75346320 75346424 -75437129 + (TG)n Simple_repeat Simple_repeat 2 107 0 2263 86 3 0 chr11 75346432 75346723 -75436830 - AluSp SINE Alu -21 292 1 1676 166 24 7 chr11 75346723 75347019 -75436534 - AluJb SINE Alu -11 301 1 1426 48 5 21 chr11 75347035 75347260 -75436293 - AluY SINE Alu 0 320 99 2473 234 89 43 chr11 75347308 75348103 -75435450 + MER97a DNA MER1_type? 9 840 -54 762 182 30 0 chr11 75348103 75348235 -75435318 + FRAM SINE Alu 13 148 -28 241 67 22 22 chr11 75348235 75348280 -75435273 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 412 18 35 0 chr11 75348290 75348347 -75435206 + (ATTAG)n Simple_repeat Simple_repeat 5 63 0 591 137 0 63 chr11 75348369 75348559 -75434994 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 669 313 62 0 chr11 75350302 75350542 -75433011 + MER46C DNA MER2_type 7 261 -77 1895 215 45 22 chr11 75351353 75351520 -75432033 + MLT1C LTR MaLR 10 172 -295 2136 92 0 3 chr11 75351520 75351804 -75431749 + AluSx SINE Alu 1 283 -29 228 67 0 0 chr11 75351804 75351834 -75431719 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1895 215 45 22 chr11 75351834 75352112 -75431441 + MLT1C LTR MaLR 171 466 -1 528 157 101 82 chr11 75352476 75352635 -75430918 - MLT1C LTR MaLR -289 178 17 1803 197 29 18 chr11 75353308 75353694 -75429859 - MLT1B LTR MaLR 0 390 1 636 207 7 7 chr11 75353997 75354132 -75429421 + MIR SINE MIR 22 156 -106 272 238 12 38 chr11 75354195 75354275 -75429278 - MIR SINE MIR -105 157 80 22 0 0 0 chr11 75355470 75355492 -75428061 + AT_rich Low_complexity Low_complexity 1 22 0 219 146 0 0 chr11 75356778 75356819 -75426734 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 514 281 9 0 chr11 75357438 75357552 -75426001 - MLT1A1 LTR MaLR -1 364 250 1791 138 8 0 chr11 75357570 75357838 -75425715 - AluJo SINE Alu -21 291 22 831 196 0 19 chr11 75357863 75358021 -75425532 - MLT1A1 LTR MaLR -210 155 1 259 286 24 0 chr11 75358066 75358150 -75425403 + MIR3 SINE MIR 71 156 -52 1029 231 88 14 chr11 75358598 75358893 -75424660 - MLT1B LTR MaLR -1 389 73 280 302 139 50 chr11 75359720 75360058 -75423495 + L2 LINE L2 2231 2598 -716 * 380 68 123 31 chr11 75359966 75360129 -75423424 + (CAGTC)n Simple_repeat Simple_repeat 1 178 0 300 313 84 62 chr11 75360102 75360329 -75423224 + L2 LINE L2 2494 2725 -589 * 835 138 0 59 chr11 75361718 75361870 -75421683 - FLAM_C SINE Alu 0 143 1 530 221 6 22 chr11 75363033 75363214 -75420339 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 379 273 6 12 chr11 75363248 75363413 -75420140 + (TCCA)n Simple_repeat Simple_repeat 1 164 0 188 289 0 10 chr11 75363453 75363550 -75420003 + (TCCA)n Simple_repeat Simple_repeat 1 96 0 361 318 79 44 chr11 75363723 75364063 -75419490 - L2 LINE L2 -360 2954 2603 318 298 191 0 chr11 75365253 75365394 -75418159 - MIR SINE MIR -9 253 86 22 0 0 0 chr11 75366081 75366103 -75417450 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr11 75366353 75366381 -75417172 + AT_rich Low_complexity Low_complexity 1 28 0 1542 197 37 24 chr11 75370780 75370840 -75412713 - MLT1B LTR MaLR 0 390 332 2036 112 4 0 chr11 75370840 75371148 -75412405 + AluSg SINE Alu 1 309 0 1542 197 37 24 chr11 75371148 75371466 -75412087 - MLT1B LTR MaLR -58 332 6 237 180 0 0 chr11 75374227 75374277 -75409276 + (TG)n Simple_repeat Simple_repeat 1 50 0 229 355 54 54 chr11 75374447 75374536 -75409017 + MIR SINE MIR 59 147 -115 1972 138 0 0 chr11 75374536 75374818 -75408735 + AluSx SINE Alu 7 288 -24 229 355 54 54 chr11 75374818 75374931 -75408622 + MIR SINE MIR 146 261 -1 407 301 55 7 chr11 75376229 75376375 -75407178 + MIR SINE MIR 42 194 -68 342 0 0 0 chr11 75377327 75377365 -75406188 + (TG)n Simple_repeat Simple_repeat 2 39 0 2067 130 0 3 chr11 75378205 75378505 -75405048 - AluSx SINE Alu -13 299 1 219 345 67 0 chr11 75379398 75379517 -75404036 + L2 LINE L2 3146 3272 0 200 247 44 57 chr11 75380044 75380173 -75403380 + MIR SINE MIR 73 198 -64 230 265 82 10 chr11 75380525 75380623 -75402930 - MIR SINE MIR -102 160 56 964 115 37 3 chr11 75380692 75381039 -75402514 + (TGGA)n Simple_repeat Simple_repeat 1 360 0 443 262 50 109 chr11 75381763 75381965 -75401588 - MIR SINE MIR -48 214 25 1225 181 0 43 chr11 75383796 75384028 -75399525 - AluJb SINE Alu -9 303 82 2010 146 0 0 chr11 75384050 75384358 -75399195 + AluSx SINE Alu 1 308 -4 1921 221 54 27 chr11 75384360 75384705 -75398848 - L1MB3 LINE L1 -11 6172 5805 1951 143 0 3 chr11 75384705 75385005 -75398548 - AluSx SINE Alu -13 299 1 1921 221 54 27 chr11 75385005 75385197 -75398356 - L1MB3 LINE L1 -378 5805 5620 433 283 47 70 chr11 75386595 75386938 -75396615 - L1ME LINE L1 -5000 1070 736 209 237 40 53 chr11 75387234 75387310 -75396243 - MIR3 SINE MIR -22 186 112 346 335 85 24 chr11 75388889 75389053 -75394500 + MER5A DNA MER1_type 7 180 -9 204 342 60 34 chr11 75389055 75389172 -75394381 + L2 LINE L2 3194 3313 0 696 205 0 0 chr11 75389205 75389366 -75394187 + (TGGA)n Simple_repeat Simple_repeat 3 163 0 260 328 106 28 chr11 75389683 75389863 -75393690 + MIR SINE MIR 24 217 -45 596 240 9 0 chr11 75389948 75390183 -75393370 + (TCCA)n Simple_repeat Simple_repeat 1 237 0 219 302 0 0 chr11 75390195 75390291 -75393262 + (CCCA)n Simple_repeat Simple_repeat 1 96 0 * 758 198 6 0 chr11 75390269 75390446 -75393107 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 202 263 0 0 chr11 75390446 75390484 -75393069 + (CCCA)n Simple_repeat Simple_repeat 1 38 0 672 210 0 0 chr11 75390488 75390655 -75392898 + (TCCA)n Simple_repeat Simple_repeat 4 170 0 267 190 0 0 chr11 75390677 75390735 -75392818 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 213 196 0 0 chr11 75390764 75390810 -75392743 + CT-rich Low_complexity Low_complexity 2 47 0 189 225 0 0 chr11 75390820 75390860 -75392693 - MIR SINE MIR -11 251 212 304 345 7 41 chr11 75392323 75392468 -75391085 - L1ME4a LINE L1 -1 6120 5981 771 252 181 33 chr11 75392468 75392865 -75390688 + MLT1C LTR MaLR 3 458 -9 2211 99 0 0 chr11 75393689 75393971 -75389582 - AluSg SINE Alu -28 282 1 1012 302 80 41 chr11 75394797 75395287 -75388266 - MLT1J LTR MaLR -2 509 1 262 279 240 8 chr11 75396212 75396341 -75387212 + MIR SINE MIR 34 192 -70 1891 190 23 3 chr11 75396347 75396700 -75386853 + L1MB3 LINE L1 5822 6181 -2 584 241 27 0 chr11 75397248 75397360 -75386193 - FLAM_A SINE Alu -18 115 1 250 311 19 0 chr11 75397876 75397979 -75385574 - MER103 DNA DNA 0 166 62 * 337 276 51 0 chr11 75397975 75398073 -75385480 - MER103 DNA DNA -62 104 2 372 192 88 64 chr11 75398209 75398334 -75385219 + Charlie8 DNA MER1_type 14 141 -2276 196 239 128 46 chr11 75399618 75399727 -75383826 - MIR SINE MIR -18 244 127 1668 152 48 21 chr11 75399973 75400262 -75383291 + AluJo SINE Alu 1 297 -15 2384 97 0 0 chr11 75401300 75401610 -75381943 - AluSg SINE Alu 0 310 1 378 286 88 33 chr11 75401656 75401838 -75381715 + L1ME LINE L1 5545 5736 -385 1160 209 62 3 chr11 75402793 75403099 -75380454 - MLT1B LTR MaLR -39 351 28 220 161 0 54 chr11 75403200 75403312 -75380241 + (CAGCC)n Simple_repeat Simple_repeat 2 107 0 243 267 0 0 chr11 75404039 75404099 -75379454 - MIR SINE MIR -123 139 80 272 325 0 0 chr11 75405051 75405134 -75378419 + MIR SINE MIR 77 159 -103 2011 131 0 27 chr11 75405251 75405549 -75378004 - AluSx SINE Alu -22 290 1 200 309 74 12 chr11 75406072 75406153 -75377400 - MIR3 SINE MIR -16 192 107 410 270 11 63 chr11 75407421 75407595 -75375958 + L1ME LINE L1 3 167 -5903 227 268 73 39 chr11 75408056 75408261 -75375292 + L1ME LINE L1 532 743 -5327 2171 112 6 10 chr11 75408524 75408837 -75374716 - AluSx SINE Alu 0 312 1 334 299 87 59 chr11 75408855 75409274 -75374279 - L2 LINE L2 -44 3269 2824 1550 204 18 71 chr11 75409339 75409732 -75373821 - MLT1A2 LTR MaLR 0 374 3 208 328 48 24 chr11 75410089 75410214 -75373339 - MIR SINE MIR -75 187 60 219 279 38 25 chr11 75410685 75410764 -75372789 - MIR3 SINE MIR -16 192 113 237 371 175 0 chr11 75412817 75413011 -75370542 - MIR SINE MIR -3 259 32 277 310 35 28 chr11 75413107 75413249 -75370304 - LTR67 LTR ERVL -2 555 413 190 239 28 28 chr11 75414094 75414165 -75369388 - L2 LINE L2 -177 3095 3025 531 255 7 34 chr11 75414303 75414452 -75369101 - MIR SINE MIR -39 223 79 335 294 72 33 chr11 75414538 75414691 -75368862 - MIR SINE MIR -90 172 14 209 241 86 0 chr11 75416554 75416612 -75366941 + L3 LINE CR1 1426 1488 -89 1819 134 17 17 chr11 75418234 75418533 -75365020 - AluJo SINE Alu -13 299 1 576 171 0 0 chr11 75418853 75418964 -75364589 + (TTGG)n Simple_repeat Simple_repeat 3 113 0 650 304 77 16 chr11 75419887 75420134 -75363419 - MLT1J2 LTR MaLR 0 450 189 1952 176 12 76 chr11 75420266 75420687 -75362866 - MLT2C1 LTR ERVL 0 397 4 209 306 35 0 chr11 75420787 75420872 -75362681 + MIR3 SINE MIR 107 194 -14 207 275 29 14 chr11 75421767 75421836 -75361717 - MIR SINE MIR -70 192 123 382 226 0 12 chr11 75422365 75422449 -75361104 - Tigger7 DNA MER2_type 0 2487 2405 1290 219 43 0 chr11 75422476 75422732 -75360821 - Tigger7 DNA MER2_type -2220 267 1 195 306 165 41 chr11 75423055 75423225 -75360328 - MIR SINE MIR -56 206 16 747 213 0 5 chr11 75423301 75423705 -75359848 + (TGG)n Simple_repeat Simple_repeat 1 402 0 315 233 0 0 chr11 75423708 75423811 -75359742 + (ATGGTG)n Simple_repeat Simple_repeat 4 106 0 * 747 183 0 0 chr11 75423800 75423980 -75359573 + (TGG)n Simple_repeat Simple_repeat 1 180 0 211 129 32 75 chr11 75424013 75424106 -75359447 + (ATGGTG)n Simple_repeat Simple_repeat 1 89 0 242 285 36 73 chr11 75424328 75424465 -75359088 + MIR SINE MIR 85 216 -46 779 69 0 20 chr11 75426349 75426451 -75357102 + AluS SINE Alu 2 101 -211 1390 126 3 107 chr11 75426451 75426761 -75356792 + AluSx SINE Alu 19 296 -16 757 263 133 33 chr11 75427707 75428038 -75355515 - MLT1A2 LTR MaLR -7 367 4 299 317 27 30 chr11 75428103 75428370 -75355183 - L1M2 LINE L1 -743 5403 5189 1780 122 42 7 chr11 75428586 75428874 -75354679 + AluSq SINE Alu 1 298 -15 2442 39 0 3 chr11 75428874 75429175 -75354378 - L1PA5 LINE L1 -205 5950 5649 1533 43 11 0 chr11 75429175 75429357 -75354196 + L1PA5 LINE L1 5966 6151 -3 198 0 0 0 chr11 75429364 75429386 -75354167 + (TA)n Simple_repeat Simple_repeat 1 22 0 2022 98 4 4 chr11 75430091 75430368 -75353185 + AluSx SINE Alu 21 297 -15 953 256 88 40 chr11 75430740 75431092 -75352461 - MLT1K LTR MaLR -65 523 155 1580 220 45 21 chr11 75432156 75432533 -75351020 - MLT1B LTR MaLR 0 390 5 359 264 141 0 chr11 75432806 75432927 -75350626 + MIR SINE MIR 81 218 -44 285 227 92 99 chr11 75433027 75433168 -75350385 - MER5B DNA MER1_type -34 144 5 287 314 0 59 chr11 75433291 75433409 -75350144 + L2 LINE L2 3203 3313 0 753 229 8 12 chr11 75433409 75433933 -75349620 + (TGGA)n Simple_repeat Simple_repeat 1 521 0 488 235 0 17 chr11 75433993 75434172 -75349381 + (TGGA)n Simple_repeat Simple_repeat 4 179 0 282 318 0 55 chr11 75434173 75434283 -75349270 + (TGGG)n Simple_repeat Simple_repeat 1 104 0 748 158 6 6 chr11 75434854 75435012 -75348541 + (TGGA)n Simple_repeat Simple_repeat 1 158 0 295 250 16 0 chr11 75435025 75435111 -75348442 + (TGGG)n Simple_repeat Simple_repeat 1 87 0 382 250 54 18 chr11 75437213 75437325 -75346228 - MIR SINE MIR -83 179 64 1455 176 44 17 chr11 75437978 75438274 -75345279 + AluJo SINE Alu 6 309 -3 219 262 98 0 chr11 75438454 75438515 -75345038 - L2 LINE L2 -1 3312 3246 2146 110 0 16 chr11 75438872 75439181 -75344372 - AluSx SINE Alu -6 306 3 402 21 0 0 chr11 75440428 75440475 -75343078 + (TG)n Simple_repeat Simple_repeat 1 47 0 487 238 16 50 chr11 75441267 75441514 -75342039 - MER41B LTR ERV1 -204 431 54 1007 184 97 123 chr11 75442378 75442599 -75340954 - MLT1D LTR MaLR -103 402 196 2238 122 0 0 chr11 75442599 75442911 -75340642 + AluSx SINE Alu 1 312 0 1007 184 97 123 chr11 75442911 75443102 -75340451 - MLT1D LTR MaLR -309 196 1 2430 230 58 66 chr11 75443324 75443449 -75340104 - L1ME2 LINE L1 -9 6155 6030 1990 141 7 0 chr11 75443449 75443748 -75339805 + AluSq SINE Alu 1 301 -12 2430 230 58 66 chr11 75443748 75444008 -75339545 - L1ME2 LINE L1 -134 6030 5769 1946 135 17 0 chr11 75444008 75444304 -75339249 - AluSq SINE Alu -10 303 3 2430 230 58 66 chr11 75444304 75444910 -75338643 - L1ME2 LINE L1 -395 5769 5189 1221 183 42 46 chr11 75444910 75445150 -75338403 + MER8 DNA MER2_type 1 239 0 2430 230 58 66 chr11 75445150 75445217 -75338336 - L1ME2 LINE L1 -975 5189 5123 1001 254 118 7 chr11 75445230 75445502 -75338051 - AluSx SINE Alu 0 302 1 1176 98 0 0 chr11 75445858 75446031 -75337522 + (TTGG)n Simple_repeat Simple_repeat 4 176 0 840 200 0 0 chr11 75446046 75446226 -75337327 + (TTGG)n Simple_repeat Simple_repeat 1 180 0 650 304 77 16 chr11 75447163 75447410 -75336143 - MLT1J2 LTR MaLR 0 450 189 1021 254 10 85 chr11 75447544 75447934 -75335619 - MLT2C1 LTR ERVL 0 397 37 520 254 11 0 chr11 75448223 75448400 -75335153 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 221 323 0 0 chr11 75448400 75448462 -75335091 + (TGGG)n Simple_repeat Simple_repeat 4 65 0 575 218 0 17 chr11 75448468 75448647 -75334906 + (TGGA)n Simple_repeat Simple_repeat 4 179 0 206 275 0 0 chr11 75448648 75448688 -75334865 + (TGGG)n Simple_repeat Simple_repeat 1 40 0 180 217 0 0 chr11 75448712 75448758 -75334795 + (TGGG)n Simple_repeat Simple_repeat 1 46 0 2041 131 0 0 chr11 75449948 75450245 -75333308 - AluSg SINE Alu -13 297 1 1401 195 27 24 chr11 75450247 75450544 -75333009 - AluJo SINE Alu -14 298 1 3570 191 37 22 chr11 75450646 75450808 -75332745 - L1MB7 LINE L1 -19 6165 6007 2100 113 17 0 chr11 75450808 75451099 -75332454 + AluSx SINE Alu 3 298 -14 3570 191 37 22 chr11 75451099 75451744 -75331809 - L1MB7 LINE L1 -177 6007 5346 281 193 55 46 chr11 75451769 75451878 -75331675 - L1ME4a LINE L1 -11 6110 6001 744 306 49 79 chr11 75452417 75452946 -75330607 - MER34 LTR ERV1 -29 513 1 2071 95 3 10 chr11 75452965 75453260 -75330293 - AluSx SINE Alu -14 298 6 412 294 40 0 chr11 75453290 75453416 -75330137 + MER45A DNA AcHobo 46 176 -2 1908 147 6 10 chr11 75454196 75454508 -75329045 + AluSx SINE Alu 1 311 -1 367 335 12 12 chr11 75455658 75455819 -75327734 + (CA)n Simple_repeat Simple_repeat 2 162 0 280 246 0 0 chr11 75456147 75456204 -75327349 + MER94 DNA DNA 2 58 -76 210 216 0 0 chr11 75456333 75456370 -75327183 + (CCCA)n Simple_repeat Simple_repeat 3 39 0 218 289 31 41 chr11 75457377 75457474 -75326079 - MIR SINE MIR -114 148 53 2076 238 55 22 chr11 75457652 75458231 -75325322 - L1MB5 LINE L1 -8 6166 5569 849 302 114 14 chr11 75459117 75459485 -75324068 - MLT1J LTR MaLR -20 491 87 216 268 18 0 chr11 75459699 75459755 -75323798 - MIR SINE MIR -63 145 89 928 328 115 11 chr11 75459879 75460321 -75323232 - MLT1K LTR MaLR -2 586 99 187 284 78 69 chr11 75460521 75460637 -75322916 + L2 LINE L2 3142 3258 -14 357 93 0 0 chr11 75460643 75460697 -75322856 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 435 278 19 0 chr11 75461541 75461649 -75321904 - MIR SINE MIR -81 181 72 198 0 0 0 chr11 75462803 75462825 -75320728 + (CAG)n Simple_repeat Simple_repeat 1 22 0 237 184 382 0 chr11 75462826 75462902 -75320651 + MER5A DNA MER1_type 50 154 -35 349 200 61 52 chr11 75462971 75463086 -75320467 + MER5A DNA MER1_type 9 124 -65 1171 211 126 32 chr11 75463291 75463633 -75319920 - MLT1A2 LTR MaLR 0 374 1 417 237 90 57 chr11 75464136 75464313 -75319240 + MLT1C LTR MaLR 7 189 -316 3321 172 64 129 chr11 75464340 75465237 -75318316 - MER49 LTR ERV1 0 923 -31 1994 108 41 0 chr11 75465237 75465532 -75318021 - AluSx SINE Alu -5 307 1 3321 172 64 129 chr11 75465532 75465545 -75318008 - MER49 LTR ERV1 -954 4294967265 -43 231 61 0 0 chr11 75465545 75465578 -75317975 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 2035 89 3 27 chr11 75465578 75465865 -75317688 - AluSc SINE Alu -29 280 1 3321 172 64 129 chr11 75465865 75465940 -75317613 - MER49 LTR ERV1 -840 83 5 534 231 17 0 chr11 75465944 75466061 -75317492 + MLT1C LTR MaLR 215 333 -134 4072 81 33 11 chr11 75466063 75466766 -75316787 - LTR17 LTR ERV1 0 780 13 623 253 20 0 chr11 75466766 75466912 -75316641 + MLT1C LTR MaLR 319 467 0 837 265 195 45 chr11 75466926 75467413 -75316140 - MER68 LTR ERV1 0 562 3 600 224 37 25 chr11 75467415 75467576 -75315977 - MIR SINE MIR -99 163 1 279 362 123 13 chr11 75467644 75467879 -75315674 - MIR SINE MIR 0 262 2 2232 107 0 0 chr11 75469373 75469672 -75313881 + AluSx SINE Alu 2 300 -12 2253 257 60 11 chr11 75470189 75470633 -75312920 - L1MDa LINE L1 -2207 4333 3912 1977 131 0 0 chr11 75470633 75470916 -75312637 + AluSx SINE Alu 2 284 -28 459 0 0 0 chr11 75470916 75470967 -75312586 + (CA)n Simple_repeat Simple_repeat 2 52 0 2253 257 60 11 chr11 75470967 75471349 -75312204 - L1MDa LINE L1 -2627 3913 3465 339 275 62 37 chr11 75471341 75471614 -75311939 - L1MDa LINE L1 -3403 3137 2858 * 2065 145 3 0 chr11 75471633 75471944 -75311609 - AluSx SINE Alu 0 312 1 189 0 0 0 chr11 75472054 75472075 -75311478 + (T)n Simple_repeat Simple_repeat 1 21 0 882 230 30 9 chr11 75472175 75472405 -75311148 + L1MB3 LINE L1 5947 6181 -2 383 316 26 0 chr11 75472951 75473065 -75310488 - FLAM_A SINE Alu -16 117 1 1143 148 0 41 chr11 75474456 75474699 -75308854 - AluSx SINE Alu -77 235 3 198 208 0 0 chr11 75474958 75475006 -75308547 + (CA)n Simple_repeat Simple_repeat 1 48 0 1055 260 56 21 chr11 75476182 75476467 -75307086 - AluJo SINE Alu -3 299 5 927 156 7 7 chr11 75477035 75477189 -75306364 - AluSq SINE Alu -159 154 1 538 249 56 31 chr11 75477265 75477299 -75306254 - L1MDa LINE L1 -3697 2843 2811 2263 52 41 0 chr11 75477299 75477589 -75305964 - AluY SINE Alu -7 304 3 538 249 56 31 chr11 75477589 75477816 -75305737 - L1MDa LINE L1 -3729 2811 2585 484 165 0 22 chr11 75477816 75477907 -75305646 + FLAM SINE Alu 39 127 -16 24 0 0 0 chr11 75477918 75477942 -75305611 + AT_rich Low_complexity Low_complexity 1 24 0 423 257 70 63 chr11 75477943 75478376 -75305177 - L1MDa LINE L1 -3967 2573 2146 449 246 65 35 chr11 75479676 75479875 -75303678 + L1M4 LINE L1 2539 2743 -3403 * 1631 276 73 15 chr11 75479867 75480249 -75303304 + L1M4 LINE L1 3071 3429 -2717 459 0 0 0 chr11 75480249 75480300 -75303253 + (TG)n Simple_repeat Simple_repeat 2 52 0 1897 141 0 0 chr11 75480300 75480583 -75302970 - AluSx SINE Alu -28 284 2 1631 276 73 15 chr11 75480583 75480924 -75302629 + L1M4 LINE L1 3428 3837 -2309 428 247 6 0 chr11 75482521 75482691 -75300862 + (TCCA)n Simple_repeat Simple_repeat 4 174 0 207 0 0 0 chr11 75482717 75482740 -75300813 + (TCCA)n Simple_repeat Simple_repeat 2 24 0 201 274 67 96 chr11 75482740 75482875 -75300678 - L2 LINE L2 0 3272 3142 464 378 60 16 chr11 75483074 75483323 -75300230 + MLT1K LTR MaLR 92 351 -237 1326 166 0 34 chr11 75483603 75483838 -75299715 - AluSq SINE Alu -86 227 1 193 278 83 14 chr11 75484372 75484444 -75299109 - MIR3 SINE MIR -25 183 107 556 284 103 19 chr11 75484819 75485090 -75298463 - MLT1K LTR MaLR -108 480 187 1290 241 37 26 chr11 75486114 75486432 -75297121 + MLT1B LTR MaLR 6 332 -58 1692 156 3 0 chr11 75486432 75486740 -75296813 - AluSg SINE Alu 0 309 1 1290 241 37 26 chr11 75486740 75486800 -75296753 + MLT1B LTR MaLR 332 390 0 1209 239 55 25 chr11 75487468 75487832 -75295721 + MLT1B LTR MaLR 16 390 0 1047 155 0 0 chr11 75488516 75488684 -75294869 - AluSx SINE Alu -144 168 1 2020 124 0 0 chr11 75490553 75490835 -75292718 - AluSg SINE Alu -28 282 1 291 307 72 33 chr11 75492390 75492543 -75291010 + MIR SINE MIR 14 172 -90 400 309 8 0 chr11 75492629 75492755 -75290798 + MIR SINE MIR 79 205 -57 1545 201 18 71 chr11 75493885 75494278 -75289275 + MLT1A2 LTR MaLR 3 374 0 215 376 175 0 chr11 75496089 75496283 -75287270 - MIR SINE MIR -3 259 32 270 324 28 21 chr11 75496379 75496521 -75287032 - LTR67 LTR ERVL -2 555 413 531 343 51 74 chr11 75497025 75497375 -75286178 - L1ME LINE L1 -4993 1537 1196 1180 211 44 17 chr11 75499233 75499527 -75284026 + AluJo SINE Alu 6 307 -5 235 316 17 69 chr11 75500121 75500295 -75283258 - L1ME LINE L1 -5903 627 463 184 296 74 12 chr11 75501568 75501649 -75281904 + MIR3 SINE MIR 107 192 -16 1663 197 37 24 chr11 75504141 75504201 -75279352 - MLT1B LTR MaLR 0 390 332 1999 112 4 0 chr11 75504201 75504509 -75279044 + AluSg SINE Alu 1 309 0 1663 197 37 24 chr11 75504509 75504827 -75278726 - MLT1B LTR MaLR -58 332 6 1131 150 6 0 chr11 75505169 75505342 -75278211 - AluSq SINE Alu -139 174 1 2309 48 41 0 chr11 75505451 75505743 -75277810 - AluY SINE Alu -7 304 1 486 235 68 27 chr11 75505745 75505966 -75277587 - L1MDa LINE L1 -3726 2680 2451 511 182 0 10 chr11 75505966 75506065 -75277488 + FLAM_C SINE Alu 39 136 -7 21 0 0 0 chr11 75506071 75506092 -75277461 + AT_rich Low_complexity Low_complexity 1 21 0 2089 244 74 28 chr11 75506093 75507257 -75276296 - L1MDa LINE L1 -3944 2462 896 1172 303 101 17 chr11 75507907 75509120 -75274433 - L1ME LINE L1 -4899 1641 19 298 291 50 40 chr11 75509411 75509610 -75273943 + MER20B DNA MER1_type 565 765 -18 283 315 247 0 chr11 75510017 75510163 -75273390 + MIR3 SINE MIR 14 195 -13 204 341 34 11 chr11 75510226 75510314 -75273239 + (CATG)n Simple_repeat Simple_repeat 3 92 0 * 366 303 5 58 chr11 75510308 75510496 -75273057 + (CA)n Simple_repeat Simple_repeat 1 178 0 321 186 0 90 chr11 75511097 75511242 -75272311 + G-rich Low_complexity Low_complexity 5 136 0 566 233 25 29 chr11 75512823 75513146 -75270407 - MER89 LTR ERV1 -2 557 182 645 214 53 18 chr11 75514635 75514943 -75268610 - MLT1A2 LTR MaLR -3 371 10 269 317 20 0 chr11 75515872 75515973 -75267580 - L2 LINE L2 -227 3045 2943 1041 128 0 0 chr11 75516777 75517002 -75266551 + (TGGA)n Simple_repeat Simple_repeat 4 226 0 180 152 0 0 chr11 75517092 75517125 -75266428 + (TGGA)n Simple_repeat Simple_repeat 3 35 0 246 247 0 101 chr11 75517933 75518022 -75265531 - L2 LINE L2 -2 3311 3232 * 292 215 38 51 chr11 75518016 75518095 -75265458 - L2 LINE L2 -25 3288 3211 977 155 22 62 chr11 75518234 75518460 -75265093 - MLT1B LTR MaLR -173 217 1 890 265 140 28 chr11 75521403 75521825 -75261728 - MLT1D LTR MaLR -33 472 4 1989 138 0 3 chr11 75522394 75522692 -75260861 - AluSg SINE Alu -13 297 1 783 212 22 0 chr11 75524430 75524614 -75258939 - MER58A DNA MER1_type 0 224 37 420 300 36 7 chr11 75524614 75524754 -75258799 + MIR SINE MIR 49 192 -70 464 293 7 7 chr11 75524792 75524942 -75258611 + L2 LINE L2 2887 3036 -236 740 319 166 18 chr11 75525141 75526356 -75257197 - L2 LINE L2 0 3272 1831 2600 210 15 21 chr11 75526356 75526715 -75256838 + L1MB5 LINE L1 5649 6006 -168 1620 219 38 46 chr11 75526715 75527108 -75256445 - MLT1B LTR MaLR 0 390 1 2600 210 15 21 chr11 75527108 75527277 -75256276 + L1MB5 LINE L1 6006 6174 0 740 319 166 18 chr11 75527277 75527363 -75256190 - L2 LINE L2 -1441 1831 1759 319 362 110 0 chr11 75528024 75528187 -75255366 - MIR SINE MIR -46 216 36 1805 123 0 36 chr11 75528285 75528593 -75254960 + AluY SINE Alu 1 297 -14 401 489 6 54 chr11 75528598 75528913 -75254640 - L1MB5 LINE L1 -47 6127 5827 2012 117 26 16 chr11 75528913 75529222 -75254331 - AluSx SINE Alu 0 312 1 401 489 6 54 chr11 75529222 75529237 -75254316 - L1MB5 LINE L1 -347 5827 5813 297 342 33 8 chr11 75530905 75531025 -75252528 - MIR SINE MIR -56 206 84 601 250 55 0 chr11 75531026 75531190 -75252363 - MLT1H LTR MaLR 0 549 377 944 243 70 11 chr11 75531231 75531503 -75252050 - MLT1H LTR MaLR -261 288 1 196 182 0 0 chr11 75533119 75533152 -75250401 + MIR SINE MIR 224 256 -6 2171 117 0 0 chr11 75533810 75534109 -75249444 + AluSx SINE Alu 1 299 -13 1834 265 71 28 chr11 75534461 75534816 -75248737 - MLT1E LTR MaLR -3 590 201 273 29 0 0 chr11 75534816 75534850 -75248703 + (GA)n Simple_repeat Simple_repeat 1 34 0 1834 265 71 28 chr11 75534850 75535060 -75248493 - MLT1E LTR MaLR -392 201 1 326 266 7 21 chr11 75535467 75535610 -75247943 - MER20B DNA MER1_type -2 781 641 450 272 44 19 chr11 75535623 75535829 -75247724 - LTR33A LTR ERVL -16 507 297 645 327 103 2 chr11 75536165 75536563 -75246990 - MER20B DNA MER1_type -340 443 6 203 247 0 24 chr11 75537258 75537343 -75246210 + (TATG)n Simple_repeat Simple_repeat 4 86 0 208 301 27 0 chr11 75537969 75538042 -75245511 - L2 LINE L2 -51 3262 3188 249 296 21 0 chr11 75538072 75538171 -75245382 - MIR SINE MIR -42 166 63 356 302 33 21 chr11 75538762 75538915 -75244638 + MIR3 SINE MIR 7 164 -65 331 295 166 16 chr11 75539084 75539277 -75244276 - MIR SINE MIR 0 262 41 1805 153 14 11 chr11 75544766 75545047 -75238506 + AluJo SINE Alu 1 282 -30 264 261 0 28 chr11 75545157 75545244 -75238309 + MIR SINE MIR 29 113 -95 410 298 48 30 chr11 75545317 75545485 -75238068 + MIR SINE MIR 57 227 -35 223 333 32 48 chr11 75545974 75546100 -75237453 + MIR SINE MIR 114 237 -25 189 253 13 80 chr11 75546396 75546471 -75237082 - L2 LINE L2 -2852 462 393 950 282 64 39 chr11 75547447 75547930 -75235623 + MLT1D LTR MaLR 1 495 -10 225 175 0 0 chr11 75548851 75548891 -75234662 + CT-rich Low_complexity Low_complexity 2 41 0 546 289 21 0 chr11 75549027 75549214 -75234339 - MLT1E2 LTR MaLR -79 547 357 310 143 124 86 chr11 75549211 75549316 -75234237 - MLT1E2 LTR MaLR -382 244 136 * 1501 94 17 21 chr11 75549877 75550111 -75233442 + AluY SINE Alu 65 297 -14 249 108 0 0 chr11 75550331 75550368 -75233185 + (CA)n Simple_repeat Simple_repeat 2 38 0 322 343 0 9 chr11 75551169 75551277 -75232276 + MIR SINE MIR 155 261 -1 431 214 53 24 chr11 75551515 75551688 -75231865 - MLT1J LTR MaLR -204 242 63 1158 227 104 0 chr11 75553881 75554198 -75229355 - L1MB5 LINE L1 -8 6166 5817 2021 225 14 21 chr11 75554211 75554722 -75228831 - L1MB3 LINE L1 0 6183 5677 486 302 179 9 chr11 75555236 75555448 -75228105 + L3 LINE CR1 1321 1568 -9 550 216 0 0 chr11 75556041 75556152 -75227401 - L1MB5 LINE L1 -247 5927 5817 1389 199 14 14 chr11 75556166 75556447 -75227106 - L1MB3 LINE L1 0 6183 5903 515 261 11 0 chr11 75557509 75557770 -75225783 + (TCCA)n Simple_repeat Simple_repeat 1 263 0 484 299 178 32 chr11 75557787 75558125 -75225428 - L2 LINE L2 -1 3312 2926 227 315 210 10 chr11 75558164 75558478 -75225075 - L2 LINE L2 -470 2844 2468 266 365 37 44 chr11 75558989 75559205 -75224348 + MIR SINE MIR 36 249 -13 2206 107 0 19 chr11 75559587 75559905 -75223648 - AluSx SINE Alu 0 312 1 268 154 0 0 chr11 75560791 75560843 -75222710 + (TATATG)n Simple_repeat Simple_repeat 4 55 0 589 175 103 0 chr11 75560898 75561024 -75222529 + FLAM_C SINE Alu 5 143 0 204 330 46 28 chr11 75561801 75561910 -75221643 - MIR3 SINE MIR -41 167 57 1581 141 40 22 chr11 75562140 75562417 -75221136 - AluJo SINE Alu -30 282 1 2258 103 0 0 chr11 75562616 75562916 -75220637 + AluSx SINE Alu 1 300 -12 757 243 45 90 chr11 75562937 75563205 -75220348 + MLT1D LTR MaLR 206 499 -6 700 153 89 0 chr11 75563433 75563557 -75219996 + FLAM_C SINE Alu 1 135 -8 184 257 54 14 chr11 75563705 75563779 -75219774 + MIR SINE MIR 59 135 -73 215 220 20 0 chr11 75564012 75564062 -75219491 + CT-rich Low_complexity Low_complexity 3 53 0 519 156 0 21 chr11 75564197 75564293 -75219260 - AluSq/x SINE Alu -168 144 51 1019 254 113 34 chr11 75566000 75566441 -75217112 + MLT1D LTR MaLR 24 499 -6 183 267 17 17 chr11 75566561 75566621 -75216932 - MIR SINE MIR -117 145 86 211 354 48 14 chr11 75566772 75566919 -75216634 + MER91B DNA MER1_type 34 185 -5 205 287 69 11 chr11 75566982 75567069 -75216484 - L2 LINE L2 -37 3235 3144 604 267 22 17 chr11 75567330 75567510 -75216043 + MIR SINE MIR 12 192 -70 2284 98 0 16 chr11 75567859 75568166 -75215387 + AluSg SINE Alu 1 302 -8 444 230 6 11 chr11 75568354 75568528 -75215025 + (CAT)n Simple_repeat Simple_repeat 1 173 0 553 280 184 14 chr11 75568696 75568914 -75214639 + MIR SINE MIR 3 257 -5 185 284 37 25 chr11 75568958 75569039 -75214514 - MIR SINE MIR -102 106 25 271 298 106 0 chr11 75569117 75569211 -75214342 - MIR SINE MIR -96 166 63 651 336 57 35 chr11 75570705 75571071 -75212482 + MLT1I LTR MaLR 1 374 -35 749 79 0 10 chr11 75571083 75571184 -75212369 - HY3 scRNA scRNA -1 100 1 874 275 25 104 chr11 75571710 75572153 -75211400 + L2 LINE L2 2570 2977 -337 226 359 0 0 chr11 75572169 75572247 -75211306 + L2 LINE L2 3236 3313 0 258 379 55 7 chr11 75572357 75572502 -75211051 + MIR3 SINE MIR 25 176 -32 496 280 103 54 chr11 75574157 75574604 -75208949 + HAL1 LINE L1 1053 1521 -986 474 221 20 13 chr11 75574707 75574856 -75208697 + L1M4 LINE L1 2423 2572 -3574 226 260 104 0 chr11 75575083 75575160 -75208393 + HAL1 LINE L1 1812 1896 -611 279 0 0 0 chr11 75575473 75575504 -75208049 + (T)n Simple_repeat Simple_repeat 1 31 0 207 0 0 0 chr11 75575641 75575664 -75207889 + (A)n Simple_repeat Simple_repeat 1 23 0 238 414 38 16 chr11 75575845 75576031 -75207522 + MIR SINE MIR 73 262 0 1854 160 0 0 chr11 75577195 75577498 -75206055 + AluJo SINE Alu 1 303 0 219 275 50 12 chr11 75577850 75577930 -75205623 - MIR SINE MIR -77 185 103 1574 28 0 0 chr11 75578250 75578432 -75205121 + AluY SINE Alu 115 296 -15 399 274 64 26 chr11 75578521 75578543 -75205010 + L1M4 LINE L1 2468 2488 -3658 1743 147 6 52 chr11 75578543 75578824 -75204729 + AluSx SINE Alu 1 266 -46 202 0 29 57 chr11 75578824 75578859 -75204694 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 1743 147 6 52 chr11 75578859 75578904 -75204649 + AluSx SINE Alu 266 312 0 399 274 64 26 chr11 75578904 75579147 -75204406 + L1M4 LINE L1 2488 2743 -3403 * 884 261 82 5 chr11 75579139 75579530 -75204023 + L1M4 LINE L1 3071 3491 -2655 848 144 0 0 chr11 75579539 75579664 -75203889 - AluSg/x SINE Alu -27 285 161 371 337 117 6 chr11 75580392 75580555 -75202998 - MIR SINE MIR -46 216 36 860 87 7 51 chr11 75580654 75580792 -75202761 + AluYb8 SINE Alu 1 132 -186 359 264 36 0 chr11 75580897 75581007 -75202546 + MER63A DNA MER1_type 97 210 0 266 278 194 49 chr11 75581129 75581273 -75202280 + MIR3 SINE MIR 30 194 -14 246 305 52 96 chr11 75581619 75581868 -75201685 + L2 LINE L2 3030 3267 -5 257 184 10 29 chr11 75581882 75581985 -75201568 + (TGGA)n Simple_repeat Simple_repeat 3 103 0 273 110 58 69 chr11 75581989 75582162 -75201391 + (GACTG)n Simple_repeat Simple_repeat 5 175 0 381 43 0 0 chr11 75582167 75582214 -75201339 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 189 0 0 0 chr11 75582328 75582349 -75201204 + (A)n Simple_repeat Simple_repeat 1 21 0 1812 148 44 0 chr11 75582448 75582746 -75200807 + AluJo SINE Alu 1 311 -1 263 269 0 0 chr11 75584241 75584308 -75199245 - MLT1L LTR MaLR 0 615 549 284 225 50 0 chr11 75584382 75584462 -75199091 - MLT1L LTR MaLR -223 392 309 227 355 33 14 chr11 75584673 75584888 -75198665 - L2 LINE L2 -39 3233 2928 659 293 43 11 chr11 75585409 75585597 -75197956 + MIR SINE MIR 51 244 -18 926 172 16 21 chr11 75585998 75586190 -75197363 + MER58A DNA MER1_type 12 202 -22 1804 129 35 11 chr11 75586233 75586520 -75197033 + AluSq SINE Alu 1 294 -19 2419 161 49 2 chr11 75586564 75586974 -75196579 - MSTB1 LTR MaLR 0 432 4 344 296 19 0 chr11 75587707 75587815 -75195738 - MER81 DNA DNA -2 112 3 395 321 0 0 chr11 75587907 75588013 -75195540 - MIR SINE MIR -61 147 42 334 305 129 50 chr11 75588056 75588518 -75195035 - L2 LINE L2 -39 3274 2757 2459 83 0 0 chr11 75588518 75588830 -75194723 + AluSx SINE Alu 1 312 0 334 305 129 50 chr11 75588830 75588891 -75194662 - L2 LINE L2 -556 2757 2702 210 299 65 0 chr11 75588953 75589030 -75194523 - L2 LINE L2 -803 2511 2430 214 361 39 8 chr11 75589471 75589601 -75193952 - MIR3 SINE MIR -72 136 3 183 282 153 35 chr11 75589659 75589744 -75193809 + L2 LINE L2 3165 3259 -13 875 238 40 92 chr11 75592645 75593108 -75190445 - MLT1C LTR MaLR -19 434 9 231 412 42 0 chr11 75593111 75593230 -75190323 + L2 LINE L2 3145 3268 -4 676 259 32 26 chr11 75594035 75594224 -75189329 - MER91B DNA MER1_type 0 190 1 191 329 14 14 chr11 75595005 75595078 -75188475 + L2 LINE L2 3045 3117 -155 204 308 218 15 chr11 75595449 75595582 -75187971 - MIR SINE MIR -63 199 40 1655 177 3 14 chr11 75595793 75596087 -75187466 + AluJo SINE Alu 1 291 -21 246 285 175 15 chr11 75596308 75596445 -75187108 - MIR SINE MIR -102 160 2 221 318 36 45 chr11 75597256 75597366 -75186187 - MIR SINE MIR -70 192 84 243 222 0 0 chr11 75597780 75597825 -75185728 + MIR SINE MIR 108 152 -56 216 143 0 0 chr11 75599152 75599194 -75184359 + (CCG)n Simple_repeat Simple_repeat 1 42 0 498 17 0 0 chr11 75599673 75599732 -75183821 + (TG)n Simple_repeat Simple_repeat 2 60 0 876 36 0 0 chr11 75602912 75603024 -75180529 + (TG)n Simple_repeat Simple_repeat 2 113 0 276 276 128 58 chr11 75605251 75605407 -75178146 + MER5B DNA MER1_type 12 178 0 500 301 58 0 chr11 75605723 75605879 -75177674 - MIR SINE MIR -62 200 36 779 339 128 41 chr11 75605888 75606180 -75177373 + L1ME4a LINE L1 5365 5630 -491 2362 64 0 3 chr11 75606180 75606475 -75177078 + AluSx SINE Alu 17 310 -2 779 339 128 41 chr11 75606475 75606866 -75176687 + L1ME4a LINE L1 5630 6117 -4 1313 99 0 6 chr11 75607299 75607471 -75176082 + AluSx SINE Alu 1 171 -141 219 69 0 0 chr11 75607634 75607663 -75175890 + (T)n Simple_repeat Simple_repeat 1 29 0 890 94 0 0 chr11 75607663 75607780 -75175773 + AluSx SINE Alu 174 290 -22 2418 69 3 3 chr11 75607960 75608266 -75175287 + AluY SINE Alu 1 306 -5 1648 171 14 10 chr11 75608411 75608703 -75174850 - AluJo SINE Alu -19 293 1 288 287 228 0 chr11 75609196 75609297 -75174256 - L3 LINE CR1 -1014 563 440 507 233 50 0 chr11 75610097 75610217 -75173336 + MIR SINE MIR 14 139 -123 209 261 234 9 chr11 75610305 75610416 -75173137 - L2 LINE L2 0 3272 3137 235 226 48 0 chr11 75611054 75611116 -75172437 + L2 LINE L2 2997 3061 -252 265 135 0 0 chr11 75612915 75612967 -75170586 - L1MB4 LINE L1 0 6180 6129 * 1558 222 91 0 chr11 75612960 75613365 -75170188 - L1MB7 LINE L1 -160 6024 5583 378 335 81 12 chr11 75613603 75613776 -75169777 - MIR SINE MIR -18 244 60 2020 93 3 17 chr11 75614066 75614411 -75169142 + AluSq SINE Alu 1 341 0 319 326 165 26 chr11 75615170 75615400 -75168153 - MIR SINE MIR 0 262 1 182 61 0 30 chr11 75615795 75615828 -75167725 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 1999 107 47 3 chr11 75615994 75616292 -75167261 - AluSx SINE Alu -1 311 1 1409 132 57 34 chr11 75616803 75617068 -75166485 + L1MB3 LINE L1 5906 6176 -7 282 318 103 15 chr11 75617303 75617498 -75166055 + L2 LINE L2 3078 3289 -24 2464 54 0 10 chr11 75617637 75617950 -75165603 - AluY SINE Alu -1 310 1 1008 190 28 36 chr11 75618145 75618398 -75165155 - L1MA4 LINE L1 -4 6296 6046 331 300 18 9 chr11 75619643 75619753 -75163800 - MLT1J1 LTR MaLR -296 150 40 2241 94 10 3 chr11 75619841 75620148 -75163405 + AluY SINE Alu 3 311 0 256 325 13 0 chr11 75620411 75620488 -75163065 - MIR3 SINE MIR -50 158 81 1400 228 117 43 chr11 75620664 75621134 -75162419 - MLT1D LTR MaLR 0 505 1 1452 200 108 9 chr11 75621642 75621967 -75161586 + MLT1A1 LTR MaLR 1 357 -8 2208 85 33 7 chr11 75622202 75622507 -75161046 - AluSq SINE Alu 0 313 1 267 247 0 0 chr11 75624065 75624154 -75159399 + (CA)n Simple_repeat Simple_repeat 2 90 0 502 223 49 8 chr11 75624175 75624302 -75159251 + MLT1B LTR MaLR 272 383 -7 474 343 0 0 chr11 75624305 75624480 -75159073 + (CA)n Simple_repeat Simple_repeat 2 176 0 249 267 0 0 chr11 75624567 75624683 -75158870 + (CA)n Simple_repeat Simple_repeat 1 116 0 304 289 0 15 chr11 75624709 75624984 -75158569 + (CA)n Simple_repeat Simple_repeat 1 271 0 181 306 124 16 chr11 75625069 75625262 -75158291 - L2 LINE L2 -244 3069 2856 4494 191 24 30 chr11 75625469 75626320 -75157233 - L1MB3 LINE L1 -7 6176 5321 2099 123 0 0 chr11 75626320 75626621 -75156932 - AluSx SINE Alu -11 301 1 4494 191 24 30 chr11 75626621 75626901 -75156652 - L1MB3 LINE L1 -862 5321 5041 319 307 22 53 chr11 75627562 75627787 -75155766 - L1MC5 LINE L1 -789 7172 6955 314 266 83 9 chr11 75627869 75627978 -75155575 + L1MC4 LINE L1 6589 6705 -1337 192 184 61 0 chr11 75627985 75628083 -75155470 + (TA)n Simple_repeat Simple_repeat 2 105 0 2103 38 8 15 chr11 75628813 75629075 -75154478 + AluY SINE Alu 39 298 -13 372 22 0 0 chr11 75629783 75629828 -75153725 + (TG)n Simple_repeat Simple_repeat 2 46 0 1452 223 107 17 chr11 75630318 75630740 -75152813 - MLT1C LTR MaLR 0 467 8 225 186 0 0 chr11 75631378 75631421 -75152132 - MIR SINE MIR -55 153 111 184 329 55 14 chr11 75632621 75632694 -75150859 + MIR SINE MIR 117 192 -70 1972 95 0 0 chr11 75632983 75633245 -75150308 + AluSx SINE Alu 40 301 -11 1666 140 56 59 chr11 75633302 75633658 -75149895 + MER46B DNA MER2_type 1 230 -6 815 324 71 21 chr11 75633676 75634056 -75149497 - MLT1I LTR MaLR 0 409 11 234 62 0 0 chr11 75635363 75635395 -75148158 + (T)n Simple_repeat Simple_repeat 1 32 0 195 118 59 0 chr11 75635564 75635598 -75147955 + MIR SINE MIR 113 148 -60 1744 257 55 69 chr11 75635602 75636234 -75147319 + MER77 LTR ERV1 25 693 -6 535 236 68 6 chr11 75636400 75636561 -75146992 - MER20 DNA MER1_type -16 203 33 754 218 96 21 chr11 75637379 75637567 -75145986 + MER3 DNA MER1_type 1 202 -7 2502 48 0 10 chr11 75638452 75638765 -75144788 - AluY SINE Alu -1 310 1 1008 190 28 36 chr11 75638960 75639213 -75144340 - L1MA4 LINE L1 -4 6296 6046 331 300 18 9 chr11 75640458 75640568 -75142985 - MLT1J1 LTR MaLR -296 150 40 2258 84 10 7 chr11 75640656 75640964 -75142589 + AluY SINE Alu 3 311 0 37 0 0 0 chr11 75640973 75641010 -75142543 + AT_rich Low_complexity Low_complexity 1 37 0 431 337 130 32 chr11 75641477 75641601 -75141952 + L1ME4a LINE L1 5547 5658 -463 1471 197 0 3 chr11 75641601 75641896 -75141657 + AluSx SINE Alu 17 310 -2 431 337 130 32 chr11 75641896 75642172 -75141381 + L1ME4a LINE L1 5658 5986 -135 1283 105 0 6 chr11 75642720 75642892 -75140661 + AluSx SINE Alu 1 171 -141 360 328 74 0 chr11 75643171 75643293 -75140260 - L1M4 LINE L1 -1278 4868 4738 1234 214 24 7 chr11 75643294 75643588 -75139965 + AluSx SINE Alu 1 299 -13 754 218 96 21 chr11 75644030 75644218 -75139335 - MER3 DNA MER1_type -7 202 1 180 0 0 0 chr11 75644928 75644948 -75138605 + (A)n Simple_repeat Simple_repeat 1 20 0 387 0 0 0 chr11 75645336 75645379 -75138174 + (G)n Simple_repeat Simple_repeat 1 43 0 423 0 0 0 chr11 75645411 75645458 -75138095 + (A)n Simple_repeat Simple_repeat 1 47 0 441 0 0 0 chr11 75645485 75645534 -75138019 + (T)n Simple_repeat Simple_repeat 1 49 0 225 0 0 0 chr11 75645564 75645589 -75137964 + (T)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr11 75645713 75645733 -75137820 + (C)n Simple_repeat Simple_repeat 1 20 0 2544 35 7 3 chr11 75645740 75646050 -75137503 - AluY SINE Alu 0 311 1 352 266 46 44 chr11 75646108 75646419 -75137134 - L1M4 LINE L1 -1713 4433 4045 22 0 0 0 chr11 75646677 75646699 -75136854 + AT_rich Low_complexity Low_complexity 1 22 0 1564 101 5 0 chr11 75647571 75647780 -75135773 - AluSp SINE Alu -40 273 64 526 282 34 54 chr11 75647780 75648251 -75135302 - L1MCa LINE L1 -4654 1953 1301 441 323 62 24 chr11 75648251 75648309 -75135244 - AluSq SINE Alu 0 313 259 180 0 0 0 chr11 75648309 75648329 -75135224 + (G)n Simple_repeat Simple_repeat 1 20 0 441 323 62 24 chr11 75648329 75648561 -75134992 - AluSq SINE Alu -54 259 12 1519 158 100 51 chr11 75649234 75649486 -75134067 - MLT1B LTR MaLR -7 358 108 2047 99 14 10 chr11 75649486 75649780 -75133773 - AluSx SINE Alu -17 295 1 1519 158 100 51 chr11 75649780 75649886 -75133667 - MLT1B LTR MaLR -257 108 9 191 286 71 31 chr11 75649988 75650086 -75133467 + MIR SINE MIR 17 118 -90 1326 208 68 22 chr11 75650846 75651257 -75132296 - L1MC2 LINE L1 -1 6343 5915 24 53 0 0 chr11 75651273 75651311 -75132242 + AT_rich Low_complexity Low_complexity 1 38 0 995 311 64 23 chr11 75651567 75652143 -75131410 - L1M4 LINE L1 -2129 4017 3418 180 0 0 0 chr11 75652603 75652623 -75130930 + (TTGG)n Simple_repeat Simple_repeat 1 20 0 2132 108 0 0 chr11 75652623 75652909 -75130644 - AluSx SINE Alu -26 286 1 1118 254 78 24 chr11 75654309 75654683 -75128870 - MLT1C LTR MaLR -15 452 59 23 0 0 0 chr11 75655100 75655123 -75128430 + AT_rich Low_complexity Low_complexity 1 23 0 693 245 30 15 chr11 75655768 75655968 -75127585 - L1MB5 LINE L1 -50 6124 5922 921 223 5 35 chr11 75655989 75656191 -75127362 - MER8 DNA MER2_type -36 203 8 390 295 22 14 chr11 75656219 75656358 -75127195 - L1MB5 LINE L1 -301 5883 5744 465 200 0 0 chr11 75656360 75656450 -75127103 - MER93a LTR ERV1 -2 400 311 258 247 82 0 chr11 75656587 75656660 -75126893 + L2 LINE L2 3194 3272 0 1851 128 3 52 chr11 75658440 75658768 -75124785 - AluSx SINE Alu 0 312 1 180 77 0 0 chr11 75658924 75658950 -75124603 + (T)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr11 75659171 75659193 -75124360 + AT_rich Low_complexity Low_complexity 1 22 0 947 235 163 0 chr11 75659225 75659489 -75124064 - AluSx SINE Alu -2 310 4 347 274 9 44 chr11 75660927 75661040 -75122513 + MIR SINE MIR 103 211 -51 302 235 15 0 chr11 75662130 75662198 -75121355 + MIR SINE MIR 59 127 -135 381 356 36 37 chr11 75662631 75662893 -75120660 - L1ME3A LINE L1 -134 6028 5764 257 222 83 0 chr11 75663053 75663125 -75120428 - MER46C DNA MER2_type -139 199 122 2124 187 81 0 chr11 75663430 75663826 -75119727 - MSTA LTR MaLR 0 428 1 555 276 58 65 chr11 75663905 75664113 -75119440 - L1ME3A LINE L1 -698 5472 5264 1979 118 3 11 chr11 75664113 75664248 -75119305 + AluSx SINE Alu 1 135 -177 2173 117 3 0 chr11 75664248 75664546 -75119007 + AluSc SINE Alu 1 299 -10 1979 118 3 11 chr11 75664546 75664697 -75118856 + AluSx SINE Alu 135 285 -27 555 276 58 65 chr11 75664697 75665082 -75118471 - L1ME3A LINE L1 -906 5264 4885 381 131 0 0 chr11 75665284 75665345 -75118208 + (T)n Simple_repeat Simple_repeat 1 61 0 2151 236 56 0 chr11 75666067 75666643 -75116910 + L1MB5 LINE L1 5539 6146 -28 878 142 0 0 chr11 75666670 75666797 -75116756 - FLAM_C SINE Alu -4 129 3 1224 229 118 0 chr11 75667043 75667392 -75116161 - L1MB5 LINE L1 0 6174 5785 223 291 150 14 chr11 75667477 75667507 -75116046 - MIR3 SINE MIR -30 232 207 2993 82 0 3 chr11 75667507 75667883 -75115670 - THE1C LTR MaLR 0 375 1 223 291 150 14 chr11 75667883 75668043 -75115510 - MIR3 SINE MIR -55 207 2 393 161 52 7 chr11 75668639 75668794 -75114759 + (TCCA)n Simple_repeat Simple_repeat 3 164 0 706 160 30 0 chr11 75668805 75668974 -75114579 + (TCCA)n Simple_repeat Simple_repeat 3 176 0 549 289 6 0 chr11 75670096 75670252 -75113301 - L1MB7 LINE L1 -243 5941 5785 773 285 135 5 chr11 75670685 75671092 -75112461 + MLT1D LTR MaLR 20 479 -26 205 195 0 81 chr11 75672892 75672979 -75110574 + (CTCA)n Simple_repeat Simple_repeat 1 80 0 1566 232 53 2 chr11 75673175 75673611 -75109942 - MLT1C LTR MaLR -8 459 2 1174 75 176 5 chr11 75674083 75674271 -75109282 + AluSq SINE Alu 85 304 -9 1056 232 26 46 chr11 75674333 75674678 -75108875 - L1MB3 LINE L1 -118 6065 5728 980 230 38 9 chr11 75675052 75675265 -75108288 + MER20 DNA MER1_type 1 219 0 967 237 164 18 chr11 75675535 75675932 -75107621 + MLT1D LTR MaLR 3 457 -48 3704 189 59 15 chr11 75676612 75677431 -75106122 + MER21B LTR ERV1 8 862 -1 333 186 35 47 chr11 75677661 75677747 -75105806 + MIR SINE MIR 108 192 -70 1468 273 111 31 chr11 75679089 75679510 -75104043 - MER21B LTR ERV1 -107 756 259 884 144 0 8 chr11 75679510 75679642 -75103911 - FLAM_C SINE Alu 0 133 3 1468 273 111 31 chr11 75679642 75679898 -75103655 - MER21B LTR ERV1 -604 259 25 1090 205 179 29 chr11 75680282 75680662 -75102891 + MER31A LTR ERV1 1 437 -48 2016 134 0 0 chr11 75680677 75680967 -75102586 - AluSx SINE Alu -22 290 1 1261 238 63 34 chr11 75682076 75682522 -75101031 + MLT1C LTR MaLR 1 459 -8 1226 322 60 12 chr11 75684953 75685515 -75098038 - L1ME1 LINE L1 -232 5934 5346 272 281 25 33 chr11 75685549 75685604 -75097949 + CT-rich Low_complexity Low_complexity 4 58 -65 1216 243 52 57 chr11 75685604 75685671 -75097882 - MLT1A1 LTR MaLR 0 365 299 2158 101 0 0 chr11 75685671 75685957 -75097596 + AluSx SINE Alu 1 286 -26 1216 243 52 57 chr11 75685957 75686256 -75097297 - MLT1A1 LTR MaLR -66 299 1 272 281 25 33 chr11 75686256 75686321 -75097232 + CT-rich Low_complexity Low_complexity 58 123 0 234 313 12 12 chr11 75688093 75688173 -75095380 - MER116 DNA Mariner 0 80 1 204 120 13 53 chr11 75688253 75688328 -75095225 + (TCTCTG)n Simple_repeat Simple_repeat 4 75 0 467 253 70 21 chr11 75688420 75688606 -75094947 - MLT1K LTR MaLR -253 335 141 1807 196 47 29 chr11 75690374 75690579 -75092974 - MLT1B LTR MaLR 0 390 173 1872 130 13 7 chr11 75690579 75690879 -75092674 - AluSg1 SINE Alu -7 302 1 1807 196 47 29 chr11 75690879 75691056 -75092497 - MLT1B LTR MaLR -217 173 1 2326 133 30 25 chr11 75691954 75692316 -75091237 + THE1B LTR MaLR 1 364 0 27 0 0 0 chr11 75692371 75692398 -75091155 + AT_rich Low_complexity Low_complexity 1 27 0 781 280 25 8 chr11 75692414 75692653 -75090900 + L1MEc LINE L1 466 708 -6117 2170 98 0 10 chr11 75692679 75692974 -75090579 + AluSg SINE Alu 1 292 -18 315 0 0 0 chr11 75692974 75693009 -75090544 + (TGGA)n Simple_repeat Simple_repeat 4 38 0 2657 263 55 65 chr11 75693009 75693665 -75089888 + L1MEc LINE L1 1036 1697 -4947 2286 105 0 6 chr11 75693665 75693979 -75089574 + AluSx SINE Alu 1 312 0 2657 263 55 65 chr11 75693979 75694511 -75089042 + L1MEc LINE L1 1697 2232 -4412 1787 94 4 0 chr11 75694511 75694746 -75088807 + AluSp SINE Alu 64 299 -14 2657 263 55 65 chr11 75694746 75695117 -75088436 + L1MEc LINE L1 2232 2605 -4039 2175 107 3 0 chr11 75695117 75695415 -75088138 + AluSc SINE Alu 1 299 -10 2657 263 55 65 chr11 75695415 75696451 -75087102 + L1MEc LINE L1 2605 3618 -3026 1518 195 3 32 chr11 75696451 75696759 -75086794 + AluJo SINE Alu 1 299 -13 2657 263 55 65 chr11 75696759 75696851 -75086702 + L1MEc LINE L1 3618 3709 -2935 1408 155 5 0 chr11 75696907 75697126 -75086427 + AluJb SINE Alu 76 295 -17 810 189 60 17 chr11 75697208 75697358 -75086195 - L1M4 LINE L1 -1250 4896 4731 2119 103 20 3 chr11 75697358 75697659 -75085894 + AluSx SINE Alu 1 306 -6 810 189 60 17 chr11 75697659 75697741 -75085812 - L1M4 LINE L1 -1415 4731 4654 203 175 0 0 chr11 75697850 75697890 -75085663 + A-rich Low_complexity Low_complexity 1 40 0 25 31 0 0 chr11 75697921 75697953 -75085600 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr11 75698074 75698102 -75085451 + AT_rich Low_complexity Low_complexity 1 28 0 5428 143 24 13 chr11 75698102 75698703 -75084850 + Tigger1 DNA MER2_type 1 617 -1801 1447 168 84 14 chr11 75698703 75698988 -75084565 + AluJo SINE Alu 1 305 -7 5428 143 24 13 chr11 75698988 75699359 -75084194 + Tigger1 DNA MER2_type 617 983 -1435 777 173 39 109 chr11 75699359 75699618 -75083935 - L1MC1 LINE L1 -434 5899 5655 324 70 0 0 chr11 75699619 75699662 -75083891 + (TC)n Simple_repeat Simple_repeat 2 44 0 789 172 60 0 chr11 75699665 75699799 -75083754 - FRAM SINE Alu -14 162 21 2249 211 68 13 chr11 75700643 75701170 -75082383 - MER74A LTR ERVL 0 558 3 347 300 80 20 chr11 75701485 75701735 -75081818 - L2 LINE L2 -394 2920 2656 312 298 77 61 chr11 75702533 75702714 -75080839 + MER5B DNA MER1_type 1 173 -5 242 362 14 71 chr11 75703562 75703703 -75079850 - MIR3 SINE MIR -62 146 14 252 0 0 0 chr11 75703760 75703788 -75079765 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 2060 115 0 0 chr11 75703788 75704066 -75079487 - AluSx SINE Alu -34 278 1 1578 202 113 5 chr11 75705370 75705805 -75077748 - MLT1D LTR MaLR -23 482 1 1426 208 40 0 chr11 75707363 75707710 -75075843 - MLT1B LTR MaLR 0 390 30 194 428 103 0 chr11 75708536 75708681 -75074872 - MIR SINE MIR -7 255 96 225 273 83 91 chr11 75708726 75708813 -75074740 - MIR SINE MIR -67 141 54 2266 68 0 10 chr11 75708813 75709107 -75074446 - AluY SINE Alu -5 306 16 225 273 83 91 chr11 75709107 75709140 -75074413 - MIR SINE MIR -154 54 22 184 257 43 14 chr11 75709506 75709576 -75073977 - L2 LINE L2 -11 3261 3190 1680 141 3 58 chr11 75709942 75710255 -75073298 - AluSx SINE Alu -16 296 1 228 86 0 0 chr11 75710980 75711015 -75072538 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 2059 98 3 52 chr11 75712627 75712955 -75070598 - AluSx SINE Alu 0 312 1 189 107 0 0 chr11 75713124 75713152 -75070401 + (T)n Simple_repeat Simple_repeat 1 28 0 2093 124 0 31 chr11 75713257 75713630 -75069923 - AluSx SINE Alu 0 363 1 13498 122 16 50 chr11 75713825 75714508 -75069045 - Tigger1 DNA MER2_type 0 2418 1713 2200 59 0 31 chr11 75714508 75714820 -75068733 - AluY SINE Alu 0 303 1 13498 122 16 50 chr11 75714820 75715575 -75067978 - Tigger1 DNA MER2_type -705 1713 934 2227 68 3 7 chr11 75715575 75715867 -75067686 + AluY SINE Alu 1 291 -20 13498 122 16 50 chr11 75715867 75716824 -75066729 - Tigger1 DNA MER2_type -1484 934 107 1025 149 6 18 chr11 75716824 75716992 -75066561 + FRAM SINE Alu 1 166 0 13498 122 16 50 chr11 75716992 75717095 -75066458 - Tigger1 DNA MER2_type -2311 107 2 212 328 179 22 chr11 75718428 75718696 -75064857 + L2 LINE L2 2942 3251 -62 180 152 0 0 chr11 75718835 75718868 -75064685 + T-rich Low_complexity Low_complexity 1 33 0 525 231 129 15 chr11 75718937 75719201 -75064352 - L1M4 LINE L1 -1526 4620 4327 2081 117 0 0 chr11 75719257 75719563 -75063990 + AluSx SINE Alu 1 306 0 309 301 25 25 chr11 75719856 75720019 -75063534 + L1MC2 LINE L1 5770 5932 -1876 247 183 0 85 chr11 75720026 75720108 -75063445 + L1MC2 LINE L1 6256 6330 -14 2157 105 0 3 chr11 75720109 75720403 -75063150 + AluSx SINE Alu 1 293 -19 577 272 31 6 chr11 75720818 75720980 -75062573 - MIR SINE MIR -86 176 11 288 288 200 0 chr11 75722112 75722237 -75061316 + L2 LINE L2 3155 3304 -9 351 0 0 0 chr11 75722241 75722280 -75061273 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 832 150 0 8 chr11 75722408 75722535 -75061018 + FLAM_C SINE Alu 3 128 -5 1916 128 0 0 chr11 75722572 75722846 -75060707 + AluSx SINE Alu 35 308 -4 1569 119 99 65 chr11 75722969 75723262 -75060291 - AluSx SINE Alu -7 305 3 2777 166 39 22 chr11 75723267 75723582 -75059971 - L1MB3 LINE L1 -42 6141 5810 1625 167 3 64 chr11 75723582 75723911 -75059642 - AluJo SINE Alu -3 309 1 2777 166 39 22 chr11 75723911 75724186 -75059367 - L1MB3 LINE L1 -373 5810 5541 1658 214 72 2 chr11 75724192 75724593 -75058960 + L1MB5 LINE L1 5738 6166 -8 470 303 46 11 chr11 75724722 75724897 -75058656 + MIR SINE MIR 12 192 -70 3184 206 52 4 chr11 75727392 75728138 -75055415 - MER49 LTR ERV1 0 923 142 1875 337 35 25 chr11 75728882 75729952 -75053601 - ERVL LTR ERVL -2402 3362 2282 390 329 20 7 chr11 75729974 75730120 -75053433 + MIR SINE MIR 113 260 -2 268 376 61 3 chr11 75732111 75732422 -75051131 + L1MC3 LINE L1 5610 5938 -1870 312 217 0 0 chr11 75732431 75732523 -75051030 + (CA)n Simple_repeat Simple_repeat 1 92 0 729 216 93 13 chr11 75733192 75733428 -75050125 + L1MC3 LINE L1 6814 7068 -717 306 247 0 0 chr11 75733442 75733515 -75050038 + MLT1F1 LTR MaLR 35 107 -460 2387 206 70 7 chr11 75733518 75734091 -75049462 + L1MC3 LINE L1 7175 7783 -2 977 135 0 0 chr11 75734100 75734233 -75049320 + FLAM_C SINE Alu 1 133 0 225 0 0 0 chr11 75734392 75734417 -75049136 + (A)n Simple_repeat Simple_repeat 1 25 0 197 294 15 66 chr11 75735081 75735217 -75048336 + L2 LINE L2 2921 3049 -223 189 0 0 0 chr11 75735887 75735908 -75047645 + (T)n Simple_repeat Simple_repeat 1 21 0 204 188 0 0 chr11 75736028 75736060 -75047493 + C-rich Low_complexity Low_complexity 1 32 0 243 0 0 0 chr11 75736338 75736365 -75047188 + (A)n Simple_repeat Simple_repeat 1 27 0 247 213 147 13 chr11 75737789 75737864 -75045689 - MIR SINE MIR -118 144 60 595 200 117 8 chr11 75737984 75738104 -75045449 - FLAM_C SINE Alu 0 133 1 340 238 31 28 chr11 75738260 75738371 -75045182 + MIR SINE MIR 31 146 -62 479 277 138 24 chr11 75739237 75739490 -75044063 + L1MB5 LINE L1 5571 5852 -322 198 153 53 38 chr11 75739522 75739653 -75043900 + (TATATG)n Simple_repeat Simple_repeat 2 134 0 1405 218 50 28 chr11 75739656 75740055 -75043498 + L1MB5 LINE L1 5767 6174 0 248 260 0 0 chr11 75742156 75742206 -75041347 + (CATA)n Simple_repeat Simple_repeat 3 52 0 499 364 23 18 chr11 75742516 75742909 -75040644 - L1ME3A LINE L1 -218 5952 5558 2387 80 0 13 chr11 75742920 75743234 -75040319 - AluY SINE Alu -1 310 1 1765 193 52 71 chr11 75743306 75743493 -75040060 + MLT1C LTR MaLR 1 190 -277 2203 125 0 0 chr11 75743493 75743797 -75039756 - AluSx SINE Alu -8 304 1 1765 193 52 71 chr11 75743797 75744045 -75039508 + MLT1C LTR MaLR 190 429 -38 1951 133 3 10 chr11 75744045 75744345 -75039208 - AluSx SINE Alu -14 298 1 1765 193 52 71 chr11 75744345 75744384 -75039169 + MLT1C LTR MaLR 429 467 0 2465 202 47 0 chr11 75745020 75745471 -75038082 + MER70A LTR ERVL 1 472 0 241 257 0 14 chr11 75745868 75745938 -75037615 - MER116 DNA Mariner -11 69 1 356 224 6 0 chr11 75746681 75746851 -75036702 + (TG)n Simple_repeat Simple_repeat 1 171 0 317 210 11 11 chr11 75746888 75747064 -75036489 + (TG)n Simple_repeat Simple_repeat 2 177 0 1837 32 0 0 chr11 75747519 75747736 -75035817 + L1PA4 LINE L1 5939 6155 0 2110 119 13 0 chr11 75747750 75748052 -75035501 + AluSq SINE Alu 1 306 -7 1530 270 56 17 chr11 75748899 75749380 -75034173 - MLT1D LTR MaLR -4 501 2 657 213 19 6 chr11 75749791 75749951 -75033602 - MLT1A2 LTR MaLR -212 162 1 1163 187 134 89 chr11 75750348 75750706 -75032847 + MLT1A2 LTR MaLR 1 374 0 286 162 81 68 chr11 75750748 75750822 -75032731 + MIR SINE MIR 117 191 -71 270 267 24 78 chr11 75750985 75751136 -75032417 - MIR SINE MIR -31 177 37 441 250 142 19 chr11 75752157 75752369 -75031184 - MLT1C LTR MaLR 0 467 230 2316 80 3 0 chr11 75752632 75752931 -75030622 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr11 75753286 75753306 -75030247 + (GGAA)n Simple_repeat Simple_repeat 1 20 0 195 167 0 0 chr11 75753607 75753649 -75029904 + (CCG)n Simple_repeat Simple_repeat 1 42 0 210 37 0 0 chr11 75754127 75754154 -75029399 + (TG)n Simple_repeat Simple_repeat 2 28 0 528 30 0 0 chr11 75757335 75757401 -75026152 + (TG)n Simple_repeat Simple_repeat 2 67 0 269 282 128 58 chr11 75759631 75759787 -75023766 + MER5B DNA MER1_type 12 178 0 500 301 58 0 chr11 75760103 75760259 -75023294 - MIR SINE MIR -62 200 36 788 341 134 41 chr11 75760268 75760560 -75022993 + L1ME4a LINE L1 5365 5628 -493 2336 63 0 10 chr11 75760560 75760859 -75022694 + AluSx SINE Alu 17 312 0 788 341 134 41 chr11 75760859 75761247 -75022306 + L1ME4a LINE L1 5628 6117 -4 332 125 34 11 chr11 75761519 75761607 -75021946 + (TGGA)n Simple_repeat Simple_repeat 3 92 0 223 291 150 14 chr11 75762203 75762363 -75021190 + MIR3 SINE MIR 2 207 -55 2993 82 0 3 chr11 75762363 75762739 -75020814 + THE1C LTR MaLR 1 375 0 223 291 150 14 chr11 75762739 75762769 -75020784 + MIR3 SINE MIR 207 232 -30 1168 228 124 0 chr11 75762854 75763201 -75020352 + L1MB5 LINE L1 5785 6174 0 878 142 0 0 chr11 75763447 75763574 -75019979 + FLAM_C SINE Alu 3 129 -4 2143 237 54 0 chr11 75763601 75764178 -75019375 - L1MB5 LINE L1 -28 6146 5539 430 283 104 0 chr11 75764393 75764566 -75018987 - MER91A DNA MER1_type -5 191 1 2162 93 24 0 chr11 75765853 75766144 -75017409 - AluSp SINE Alu -15 298 1 526 289 23 52 chr11 75766177 75766310 -75017243 + L1MC5 LINE L1 6995 7117 -869 1866 149 17 3 chr11 75766310 75766606 -75016947 + AluJo SINE Alu 1 300 -12 526 289 23 52 chr11 75766606 75766748 -75016805 + L1MC5 LINE L1 7117 7262 -724 249 317 41 24 chr11 75766919 75767042 -75016511 + L1MC5 LINE L1 7452 7576 -385 619 190 52 0 chr11 75767134 75767250 -75016303 - AluJb SINE Alu -9 303 182 4734 177 59 17 chr11 75767481 75768447 -75015106 - L1MC2 LINE L1 -9 6335 5268 1992 105 0 14 chr11 75768447 75768724 -75014829 - AluSx SINE Alu -39 273 1 4734 177 59 17 chr11 75768724 75769408 -75014145 - L1MC2 LINE L1 -1076 5268 4614 470 248 125 56 chr11 75769424 75769693 -75013860 + HAL1 LINE L1 802 1116 -1391 1407 168 34 64 chr11 75769693 75769991 -75013562 - AluJo SINE Alu -23 289 1 470 248 125 56 chr11 75769991 75770168 -75013385 + HAL1 LINE L1 1116 1279 -1228 1883 147 14 7 chr11 75770172 75770457 -75013096 + AluJb SINE Alu 1 287 -25 1720 291 113 36 chr11 75770457 75772556 -75010997 - L1ME LINE L1 -3789 2291 22 1469 252 86 36 chr11 75772563 75773196 -75010357 + HAL1 LINE L1 1576 2255 -252 989 249 43 0 chr11 75773196 75773405 -75010148 + MER20 DNA MER1_type 2 219 0 1469 252 86 36 chr11 75773405 75773540 -75010013 + HAL1 LINE L1 2255 2382 -125 1345 220 130 6 chr11 75775549 75775872 -75007681 - MLT1A1 LTR MaLR -2 363 1 1395 201 118 47 chr11 75776349 75776608 -75006945 - MLT1C LTR MaLR -14 453 151 1781 176 14 0 chr11 75776608 75776898 -75006655 - AluJo SINE Alu -18 294 1 1395 201 118 47 chr11 75776898 75777061 -75006492 - MLT1C LTR MaLR -316 151 1 239 314 9 19 chr11 75778428 75778533 -75005020 - Charlie8 DNA MER1_type -2264 153 50 213 39 0 0 chr11 75780563 75780589 -75002964 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 497 190 73 14 chr11 75786354 75786614 -74996939 + MLT1C LTR MaLR 65 382 -8 296 250 42 10 chr11 75790591 75790687 -74992866 - MER58C DNA MER1_type 0 215 117 1872 81 0 0 chr11 75790718 75790952 -74992601 + AluSx SINE Alu 1 234 -78 22 80 0 0 chr11 75791829 75791879 -74991674 + AT_rich Low_complexity Low_complexity 1 50 0 216 0 0 0 chr11 75791915 75791939 -74991614 + (T)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr11 75792101 75792124 -74991429 + GC_rich Low_complexity Low_complexity 1 23 0 308 330 9 33 chr11 75792405 75792620 -74990933 + AluSq SINE Alu 94 303 0 207 361 76 17 chr11 75794559 75794678 -74988875 - MIR SINE MIR -63 145 20 24 32 0 0 chr11 75799914 75799945 -74983608 + GC_rich Low_complexity Low_complexity 1 31 0 2138 142 119 13 chr11 75800886 75801273 -74982280 - MSTA LTR MaLR 0 428 1 903 162 0 67 chr11 75801750 75801929 -74981624 - AluJ SINE Alu -26 286 120 895 141 0 15 chr11 75802116 75802251 -74981302 - AluJ SINE Alu -169 133 1 302 328 115 9 chr11 75802328 75802525 -74981028 - MIR SINE MIR -6 256 30 309 363 45 0 chr11 75803039 75803196 -74980357 - MIR SINE MIR -83 179 16 358 250 65 71 chr11 75804983 75805151 -74978402 - L2 LINE L2 -2 3270 3104 200 342 94 8 chr11 75805579 75805696 -74977857 - L2 LINE L2 -563 2751 2625 186 256 0 0 chr11 75806880 75806923 -74976630 - L2 LINE L2 -5 3308 3266 413 133 326 0 chr11 75807390 75807488 -74976065 + FRAM SINE Alu 30 159 -17 2262 108 3 22 chr11 75809412 75809728 -74973825 - AluSx SINE Alu -2 310 1 275 385 39 6 chr11 75810327 75810509 -74973044 - MER5A DNA MER1_type -1 188 1 214 191 0 0 chr11 75817481 75817523 -74966030 + A-rich Low_complexity Low_complexity 1 42 0 214 169 270 11 chr11 75819153 75819242 -74964311 - MIR SINE MIR -86 176 65 251 240 52 73 chr11 75819586 75819682 -74963871 - MIR SINE MIR -59 203 110 333 235 12 0 chr11 75821488 75821573 -74961980 + MER67A LTR ERV1 2 87 -456 242 102 119 51 chr11 75822128 75822187 -74961366 - MLT1L LTR MaLR -403 212 150 255 250 31 31 chr11 75822980 75823076 -74960477 - MLT1L LTR MaLR 0 615 520 319 143 111 0 chr11 75823076 75823139 -74960414 + L2 LINE L2 3195 3264 -49 2566 215 26 28 chr11 75823585 75824199 -74959354 - L1MB5 LINE L1 -48 6126 5514 208 346 84 0 chr11 75824392 75824499 -74959054 - MER5A DNA MER1_type -38 151 36 641 212 49 49 chr11 75824704 75824794 -74958759 + MER5A DNA MER1_type 1 90 -99 198 0 0 0 chr11 75824794 75824816 -74958737 + (CA)n Simple_repeat Simple_repeat 2 23 0 641 212 49 49 chr11 75824816 75824909 -74958644 + MER5A DNA MER1_type 89 184 -5 191 301 162 0 chr11 75825240 75825376 -74958177 + MIR SINE MIR 35 192 -70 2161 121 0 0 chr11 75825447 75825748 -74957805 - AluSx SINE Alu 0 301 1 718 177 16 0 chr11 75825750 75825874 -74957679 - FLAM_A SINE Alu -7 126 1 434 296 59 5 chr11 75826534 75826720 -74956833 - L1ME3 LINE L1 -264 5898 5703 1616 147 60 10 chr11 75826722 75827036 -74956517 + L1MC1 LINE L1 5991 6320 -13 2031 139 7 10 chr11 75827051 75827353 -74956200 + AluSx SINE Alu 7 307 -5 1524 160 28 19 chr11 75827373 75827691 -74955862 + L1MB7 LINE L1 5864 6184 0 1338 182 15 8 chr11 75827716 75827980 -74955573 + L1MD3 LINE L1 7730 7995 0 1077 145 85 55 chr11 75828243 75828608 -74954945 + SVA Other Other 473 848 -538 5328 97 68 41 chr11 75828772 75829651 -74953902 + SVA Other Other 483 1385 -1 1986 144 162 8 chr11 75829930 75830332 -74953221 + MER4C LTR ERV1 2 465 0 244 307 0 11 chr11 75830604 75830692 -74952861 + MER34 LTR ERV1 262 348 -194 2204 108 3 19 chr11 75830757 75831073 -74952480 + AluSx SINE Alu 1 311 -1 255 378 55 8 chr11 75831106 75831233 -74952320 + MER34 LTR ERV1 375 507 -35 909 186 61 148 chr11 75831288 75831665 -74951888 - MLT1F LTR MaLR -27 515 172 2066 151 0 3 chr11 75831665 75831964 -74951589 + AluJb SINE Alu 1 298 -14 3314 115 24 19 chr11 75831966 75832547 -74951006 + L1P LINE L1 4006 4589 -1557 1819 162 3 37 chr11 75832655 75832779 -74950774 + AluJo SINE Alu 1 128 -184 2182 138 0 22 chr11 75832779 75833097 -74950456 - AluSx SINE Alu -1 311 1 1819 162 3 37 chr11 75833097 75833293 -74950260 + AluJo SINE Alu 128 310 -2 2490 75 7 0 chr11 75833662 75833968 -74949585 + AluY SINE Alu 1 308 -3 1278 129 22 0 chr11 75834091 75834269 -74949284 + AluSq SINE Alu 6 187 -126 2261 83 0 21 chr11 75834270 75834598 -74948955 + AluY SINE Alu 1 322 0 22 0 0 0 chr11 75834612 75834634 -74948919 + AT_rich Low_complexity Low_complexity 1 22 0 1266 181 0 5 chr11 75834646 75834851 -74948702 - AluJo SINE Alu -108 204 1 1034 283 79 12 chr11 75835141 75835544 -74948009 + MLT1K LTR MaLR 131 560 -28 388 276 0 0 chr11 75835930 75836035 -74947518 + L1M4 LINE L1 4264 4368 -1778 587 191 50 37 chr11 75836036 75836233 -74947320 - MER6 DNA MER2_type 0 865 -65 363 324 85 17 chr11 75836334 75836510 -74947043 + L2 LINE L2 2653 2840 -474 273 29 0 0 chr11 75836550 75836584 -74946969 + (CA)n Simple_repeat Simple_repeat 1 34 0 1071 125 15 30 chr11 75836815 75837015 -74946538 - L1MB5 LINE L1 -32 6142 5946 501 322 53 40 chr11 75837382 75837832 -74945721 - L1MEd LINE L1 -5662 457 2 1740 183 3 30 chr11 75838008 75838309 -74945244 - AluJb SINE Alu -19 293 1 447 251 132 109 chr11 75838413 75838526 -74945027 - MLT1J LTR MaLR 0 511 402 1401 160 131 26 chr11 75838526 75838794 -74944759 + AluJo SINE Alu 1 296 -16 447 251 132 109 chr11 75838794 75839083 -74944470 - MLT1J LTR MaLR -109 402 100 379 319 137 23 chr11 75839168 75839366 -74944187 + L1MC4a LINE L1 5623 5797 -2011 2425 94 10 3 chr11 75839366 75839675 -74943878 + AluSq SINE Alu 1 311 -2 379 319 137 23 chr11 75839675 75839862 -74943691 + L1MC4a LINE L1 5797 6052 -1756 349 275 89 74 chr11 75840145 75840403 -74943150 - L2 LINE L2 -337 2977 2716 698 146 0 0 chr11 75840412 75840522 -74943031 + FLAM_C SINE Alu 2 111 -32 272 295 205 5 chr11 75840557 75840767 -74942786 - L2 LINE L2 -591 2723 2472 401 162 67 0 chr11 75840790 75840895 -74942658 - LTR37A LTR ERV1 -21 405 294 1182 148 5 79 chr11 75840898 75841114 -74942439 + AluJo SINE Alu 1 200 -112 1468 163 93 19 chr11 75841257 75841401 -74942152 - AluJo SINE Alu -11 301 169 2013 60 9 73 chr11 75841401 75841716 -74941837 - AluY SINE Alu -16 295 1 1468 163 93 19 chr11 75841716 75841841 -74941712 - AluJo SINE Alu -143 169 12 2202 120 3 0 chr11 75841884 75842184 -74941369 + AluSq SINE Alu 1 301 -12 262 178 0 0 chr11 75842191 75842236 -74941317 + Alu SINE Alu 1 45 -255 261 186 214 0 chr11 75842226 75842296 -74941257 - Charlie1 DNA MER1_type -238 2523 2439 * 2330 77 3 27 chr11 75842451 75842749 -74940804 + AluY SINE Alu 1 291 -20 923 152 0 7 chr11 75842762 75842900 -74940653 + AluSq/x SINE Alu 1 137 -176 1815 100 3 51 chr11 75842903 75843214 -74940339 + AluSx SINE Alu 5 300 -12 25 51 0 0 chr11 75843214 75843253 -74940300 + AT_rich Low_complexity Low_complexity 1 39 0 198 339 45 9 chr11 75844574 75844686 -74938867 - MIR SINE MIR -57 151 36 1102 146 0 6 chr11 75844709 75844873 -74938680 - AluJo SINE Alu -45 267 105 2179 83 4 4 chr11 75844973 75845251 -74938302 - AluSg SINE Alu -31 279 2 2093 125 3 0 chr11 75845256 75845545 -74938008 - AluSx SINE Alu -22 290 1 391 343 14 28 chr11 75845617 75845833 -74937720 - L2 LINE L2 -705 2609 2397 2666 92 0 16 chr11 75846198 75846580 -74936973 + MER41A LTR ERV1 179 554 0 870 249 46 83 chr11 75846831 75846999 -74936554 - MLT1H1 LTR MaLR -188 367 194 2125 72 0 4 chr11 75846999 75847263 -74936290 - AluY SINE Alu -48 263 1 870 249 46 83 chr11 75847263 75847467 -74936086 - MLT1H1 LTR MaLR -361 194 9 1369 173 31 11 chr11 75847509 75847670 -74935883 - LTR29 LTR ERV1 0 622 466 1171 94 88 0 chr11 75847670 75847851 -74935702 - MER107 DNA MER1_type 0 197 1 1369 173 31 11 chr11 75847851 75848163 -74935390 - LTR29 LTR ERV1 -156 466 19 1761 159 0 0 chr11 75848165 75848429 -74935124 - AluJb SINE Alu -16 296 33 274 288 25 0 chr11 75848433 75848513 -74935040 - HsTC2 DNA Tc2 -1816 82 1 1675 174 31 14 chr11 75848686 75848980 -74934573 - AluJb SINE Alu -12 300 2 427 251 73 52 chr11 75848985 75849116 -74934437 - L1MC5 LINE L1 -37 7924 7797 189 0 0 0 chr11 75849116 75849137 -74934416 + (ATG)n Simple_repeat Simple_repeat 2 22 0 2358 77 11 0 chr11 75849138 75849425 -74934128 - AluSg SINE Alu -20 290 1 427 251 73 52 chr11 75849425 75849482 -74934071 - L1MC5 LINE L1 -163 7798 7730 301 209 54 62 chr11 75849518 75849647 -74933906 + HAL1 LINE L1 2087 2214 -293 2256 123 0 9 chr11 75849826 75850142 -74933411 - AluSq SINE Alu 0 313 1 2360 73 13 7 chr11 75850450 75850751 -74932802 + AluY SINE Alu 1 303 -8 2198 113 0 7 chr11 75850758 75851051 -74932502 + AluSq SINE Alu 3 293 -20 230 218 26 77 chr11 75851349 75851427 -74932126 + L2 LINE L2 3191 3264 -8 797 126 0 30 chr11 75851565 75851700 -74931853 - FLAM_C SINE Alu -2 131 1 234 0 0 0 chr11 75851702 75851728 -74931825 + (T)n Simple_repeat Simple_repeat 1 26 0 2195 86 55 0 chr11 75851832 75852124 -74931429 - AluSc SINE Alu -1 308 1 1297 172 134 8 chr11 75856465 75856727 -74926826 + AluSx SINE Alu 2 296 -16 1163 191 18 97 chr11 75856809 75857139 -74926414 - AluSq SINE Alu -9 304 1 340 280 93 0 chr11 75857248 75857366 -74926187 + MIR SINE MIR 128 256 -6 2370 95 0 0 chr11 75857429 75857723 -74925830 + AluY SINE Alu 1 294 -17 2375 94 0 3 chr11 75857723 75858020 -74925533 + AluSx SINE Alu 1 296 -16 1275 124 0 0 chr11 75858021 75858199 -74925354 + AluY SINE Alu 133 310 -1 1802 153 4 0 chr11 75858214 75858482 -74925071 + AluJo SINE Alu 1 269 -43 1649 194 42 26 chr11 75858486 75858872 -74924681 + L1MB3 LINE L1 5434 5825 -346 717 143 56 16 chr11 75858873 75858999 -74924554 + FRAM SINE Alu 26 156 -20 1140 143 38 14 chr11 75859004 75859213 -74924340 + L1MB3 LINE L1 5835 6048 -135 1789 149 86 35 chr11 75859215 75859262 -74924291 - MSTB1 LTR MaLR -3 429 386 2398 101 0 7 chr11 75859262 75859569 -74923984 - AluSq SINE Alu -8 305 1 1789 149 86 35 chr11 75859569 75859916 -74923637 - MSTB1 LTR MaLR -46 386 15 439 296 0 0 chr11 75859935 75860070 -74923483 + L1MB3 LINE L1 6042 6176 -7 547 273 56 5 chr11 75860142 75860358 -74923195 + MLT1D LTR MaLR 269 495 -10 196 258 91 0 chr11 75860720 75860786 -74922767 + MIR SINE MIR 35 106 -156 2215 76 9 67 chr11 75860914 75861243 -74922310 + AluY SINE Alu 2 311 0 275 256 89 30 chr11 75861245 75861413 -74922140 - L1MC/D LINE L1 -2340 5468 5291 1331 294 184 10 chr11 75861602 75862425 -74921128 - L2 LINE L2 -530 2784 1819 2203 89 14 0 chr11 75862671 75862976 -74920577 + AluSp SINE Alu 1 309 0 396 57 0 19 chr11 75863361 75863414 -74920139 - AluY SINE Alu -185 116 65 1278 98 0 112 chr11 75863414 75863638 -74919915 - AluSx SINE Alu -113 199 1 746 173 15 15 chr11 75864136 75864269 -74919284 - FLAM_C SINE Alu 0 133 1 1629 140 0 17 chr11 75864292 75864528 -74919025 - AluSx SINE Alu -17 295 64 702 251 18 0 chr11 75864676 75864843 -74918710 - MIR SINE MIR -72 190 21 996 192 0 6 chr11 75866070 75866247 -74917306 - FRAM SINE Alu -1 175 1 2210 106 0 3 chr11 75866681 75866973 -74916580 - AluSx SINE Alu -21 291 1 1064 109 0 0 chr11 75867336 75867473 -74916080 + AluSq/x SINE Alu 1 137 -176 2240 122 0 3 chr11 75867473 75867776 -74915777 + AluSq SINE Alu 1 302 -11 1958 160 3 13 chr11 75867948 75868260 -74915293 - AluJb SINE Alu -2 310 2 41 0 0 0 chr11 75868567 75868608 -74914945 + AT_rich Low_complexity Low_complexity 1 41 0 198 0 0 0 chr11 75868738 75868760 -74914793 + (T)n Simple_repeat Simple_repeat 1 22 0 1732 168 34 10 chr11 75869551 75869849 -74913704 - AluJo SINE Alu -7 305 1 309 320 33 25 chr11 75870164 75870286 -74913267 + MIR SINE MIR 110 232 -30 1947 125 7 28 chr11 75870412 75870742 -74912811 + AluJo SINE Alu 1 324 0 211 320 93 0 chr11 75870833 75870908 -74912645 + L2 LINE L2 2945 3026 -246 380 238 43 48 chr11 75872190 75872400 -74911153 + L1M4 LINE L1 2475 2683 -3463 2430 88 3 0 chr11 75873110 75873405 -74910148 - AluSx SINE Alu -16 296 1 817 212 48 9 chr11 75873405 75873636 -74909917 - L1M4 LINE L1 -1004 5142 4903 545 189 0 88 chr11 75873636 75873784 -74909769 - MLT1D LTR MaLR -368 137 3 1009 183 42 54 chr11 75873847 75873935 -74909618 - MER8 DNA MER2_type 0 239 151 1650 164 16 40 chr11 75873935 75874239 -74909314 + AluJo SINE Alu 1 297 -15 1009 183 42 54 chr11 75874239 75874391 -74909162 - MER8 DNA MER2_type -88 151 2 2196 123 0 13 chr11 75874739 75875040 -74908513 + AluSx SINE Alu 1 297 -15 2255 94 16 23 chr11 75875464 75875773 -74907780 + AluSx SINE Alu 1 307 -5 1996 151 3 0 chr11 75876276 75876575 -74906978 + AluSx SINE Alu 2 301 -11 216 0 0 0 chr11 75878938 75878962 -74904591 + (A)n Simple_repeat Simple_repeat 1 24 0 257 219 152 19 chr11 75879452 75879557 -74903996 - LTR37A LTR ERV1 -168 258 140 626 110 50 0 chr11 75879567 75879667 -74903886 + FLAM_C SINE Alu 24 128 -15 1379 139 116 58 chr11 75879689 75879856 -74903697 - AluJo SINE Alu -1 311 118 2468 68 3 0 chr11 75879856 75880151 -74903402 - AluSp SINE Alu -17 296 1 1379 139 116 58 chr11 75880151 75880277 -74903276 - AluJo SINE Alu -194 118 1 406 222 194 14 chr11 75880365 75880509 -74903044 - MLT1D LTR MaLR -318 187 18 394 163 50 0 chr11 75880492 75880572 -74902981 - ORSL DNA AcHobo -51 224 141 * 1178 69 0 14 chr11 75880604 75880749 -74902804 + AluSq/x SINE Alu 1 143 -170 953 142 0 0 chr11 75881017 75881151 -74902402 + AluSq/x SINE Alu 1 134 -178 198 0 0 0 chr11 75881151 75881173 -74902380 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2138 111 0 0 chr11 75881178 75881458 -74902095 + AluSx SINE Alu 1 280 -32 216 0 0 0 chr11 75881461 75881485 -74902068 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 624 172 0 16 chr11 75881597 75881725 -74901828 + FLAM_A SINE Alu 13 138 -4 473 289 0 0 chr11 75881929 75882050 -74901503 + MLT1J1 LTR MaLR 50 170 -276 865 210 83 21 chr11 75882084 75882512 -74901041 - MLT1D LTR MaLR -6 499 1 421 211 21 11 chr11 75882517 75882612 -74900941 + MLT1J1 LTR MaLR 239 334 -112 1856 163 3 10 chr11 75882889 75883195 -74900358 + AluJo SINE Alu 1 304 -8 749 174 13 47 chr11 75883293 75883442 -74900111 + FRAM SINE Alu 11 154 -22 2204 106 7 7 chr11 75883451 75883753 -74899800 + AluSq SINE Alu 1 302 -11 1484 149 48 11 chr11 75883940 75884195 -74899358 - MER4D LTR ERV1 0 903 636 2375 112 0 0 chr11 75884195 75884500 -74899053 - AluSg1 SINE Alu -4 305 1 484 132 11 22 chr11 75884500 75884591 -74898962 - MER4D LTR ERV1 -813 90 1 1401 79 0 0 chr11 75884614 75884804 -74898749 + MER41A LTR ERV1 1 190 -364 2086 75 26 8 chr11 75884805 75885072 -74898481 + AluSg SINE Alu 1 272 -38 483 225 176 27 chr11 75886363 75886583 -74896970 + L1MC4 LINE L1 7687 7784 -1 512 250 54 7 chr11 75889582 75889730 -74893823 + MLT1D-int LTR MaLR 1217 1371 0 452 219 39 8 chr11 75889789 75889917 -74893636 + MLT1D LTR MaLR 84 215 -290 335 181 345 9 chr11 75889965 75890081 -74893472 + MLT1D LTR MaLR 345 499 -6 297 162 17 191 chr11 75891608 75891781 -74891772 + Charlie1 DNA MER1_type 1531 1673 -1088 689 133 31 39 chr11 75891786 75891914 -74891639 + AluJo SINE Alu 9 135 -177 2420 82 0 3 chr11 75891935 75892229 -74891324 + AluSc SINE Alu 1 293 -16 746 173 15 15 chr11 75892252 75892385 -74891168 + FLAM_C SINE Alu 1 133 0 2454 109 0 0 chr11 75892883 75893195 -74890358 + AluSx SINE Alu 1 312 0 1530 117 170 96 chr11 75893501 75893896 -74889657 + MER4A LTR ERV1 1 424 -240 240 100 0 50 chr11 75893892 75893932 -74889621 + MER4A LTR ERV1 571 608 -56 * 1967 104 52 0 chr11 75894032 75894302 -74889251 - AluSx SINE Alu -28 284 1 280 179 90 0 chr11 75894324 75894402 -74889151 - L1M4 LINE L1 -821 5325 5241 1243 133 0 0 chr11 75894431 75894604 -74888949 - AluSg/x SINE Alu -6 304 132 2296 73 7 33 chr11 75894604 75894904 -74888649 - AluY SINE Alu -19 292 1 270 274 123 0 chr11 75894911 75895017 -74888536 + Charlie1 DNA MER1_type 2640 2758 -3 641 172 9 0 chr11 75901463 75901579 -74881974 + FLAM_A SINE Alu 2 118 -15 1566 132 6 49 chr11 75901618 75901943 -74881610 + AluSq SINE Alu 1 311 -2 2379 102 0 0 chr11 75901968 75902271 -74881282 + AluSc SINE Alu 1 303 -6 180 0 0 0 chr11 75902779 75902799 -74880754 + (CAGGC)n Simple_repeat Simple_repeat 2 21 0 240 203 94 0 chr11 75902937 75903001 -74880552 - Charlie8 DNA MER1_type -2308 109 40 396 242 68 8 chr11 75903107 75903239 -74880314 + L1MC/D LINE L1 5569 5708 -413 2282 110 0 0 chr11 75903247 75903547 -74880006 + AluSx SINE Alu 1 300 -12 559 174 0 28 chr11 75903555 75903664 -74879889 + FLAM_C SINE Alu 17 122 -21 234 0 0 0 chr11 75903664 75903690 -74879863 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 238 293 64 29 chr11 75903690 75903830 -74879723 + L1MC/D LINE L1 5738 5882 -1926 2058 108 4 4 chr11 75904341 75904619 -74878934 + AluSx SINE Alu 31 308 -4 2574 48 0 0 chr11 75906682 75906975 -74876578 - AluY SINE Alu -18 293 1 300 329 31 12 chr11 75907448 75907609 -74875944 + MER58A DNA MER1_type 29 192 -32 1676 178 21 3 chr11 75908606 75908893 -74874660 - AluJo SINE Alu -20 292 1 1858 163 0 23 chr11 75912339 75912672 -74870881 + AluJo SINE Alu 1 312 0 23 78 0 0 chr11 75914482 75914533 -74869020 + AT_rich Low_complexity Low_complexity 1 51 0 207 286 44 22 chr11 75914984 75915075 -74868478 - MIR3 SINE MIR -14 194 102 2421 90 3 0 chr11 75916008 75916318 -74867235 - AluSp SINE Alu -2 311 1 1049 161 0 0 chr11 75916990 75917145 -74866408 + FRAM SINE Alu 1 147 -29 3708 188 108 27 chr11 75917315 75917556 -74865997 + L1MB7 LINE L1 4955 5175 -1009 2341 84 0 29 chr11 75917556 75917864 -74865689 + AluSc SINE Alu 1 299 -10 3708 188 108 27 chr11 75917864 75918740 -74864813 + L1MB7 LINE L1 5175 6175 -9 2134 120 7 7 chr11 75918884 75919176 -74864377 - AluSx SINE Alu -15 297 6 1096 171 0 11 chr11 75919195 75919371 -74864182 - AluSc SINE Alu -9 300 127 2077 138 0 16 chr11 75919378 75919552 -74864001 - AluSx SINE Alu -5 307 139 2150 126 0 19 chr11 75919552 75919862 -74863691 - AluY SINE Alu -7 304 1 2077 138 0 16 chr11 75919862 75919998 -74863555 - AluSx SINE Alu -173 139 2 761 130 9 0 chr11 75920474 75920589 -74862964 + FAM SINE Alu 20 135 -50 1652 138 30 4 chr11 75920590 75920859 -74862694 - AluJo SINE Alu -32 280 5 316 363 20 20 chr11 75922446 75922592 -74860961 - MIR3 SINE MIR -62 146 1 2328 90 10 3 chr11 75922766 75923065 -74860488 - AluSx SINE Alu -11 301 1 388 251 132 109 chr11 75923348 75923637 -74859916 + MLT1J LTR MaLR 100 402 -109 1397 160 131 26 chr11 75923637 75923905 -74859648 - AluJo SINE Alu -16 296 1 388 251 132 109 chr11 75923905 75924018 -74859535 + MLT1J LTR MaLR 402 511 0 1735 183 3 30 chr11 75924122 75924423 -74859130 + AluJb SINE Alu 1 293 -19 457 309 17 6 chr11 75924599 75924777 -74858776 + L1MEd LINE L1 2 181 -5938 335 324 41 21 chr11 75924904 75925049 -74858504 + L1MEd LINE L1 310 457 -5662 1164 132 24 10 chr11 75925298 75925511 -74858042 + L1MB5 LINE L1 5935 6142 -32 273 29 0 0 chr11 75925742 75925776 -74857777 + (TG)n Simple_repeat Simple_repeat 1 34 0 402 295 84 42 chr11 75925816 75926006 -74857547 - L2 LINE L2 -474 2840 2643 584 191 50 37 chr11 75926093 75926290 -74857263 + MER6 DNA MER2_type -65 865 0 385 248 9 9 chr11 75926291 75926396 -74857157 - L1M4 LINE L1 -1778 4368 4264 952 263 89 22 chr11 75926782 75927185 -74856368 - MLT1K LTR MaLR -28 560 131 1259 181 0 5 chr11 75927475 75927680 -74855873 + AluJo SINE Alu 1 204 -108 23 0 0 0 chr11 75927692 75927715 -74855838 + AT_rich Low_complexity Low_complexity 1 23 0 2243 83 0 21 chr11 75927729 75928057 -74855496 - AluY SINE Alu 0 322 1 1274 129 22 0 chr11 75928058 75928236 -74855317 - AluSq SINE Alu -126 187 6 2480 75 7 0 chr11 75928359 75928665 -74854888 - AluY SINE Alu -3 308 1 904 132 0 15 chr11 75928665 75928801 -74854752 - AluJb SINE Alu -177 135 2 761 130 9 0 chr11 75929278 75929393 -74854160 + FAM SINE Alu 20 135 -50 1728 138 26 0 chr11 75929394 75929663 -74853890 - AluJo SINE Alu -32 280 5 1565 242 159 17 chr11 75930666 75931303 -74852250 + L2 LINE L2 1745 2471 -843 2041 129 0 14 chr11 75931308 75931469 -74852084 - AluSx SINE Alu -18 294 137 2380 61 0 49 chr11 75931469 75931796 -74851757 - AluY SINE Alu 0 311 1 2041 129 0 14 chr11 75931796 75931921 -74851632 - AluSx SINE Alu -175 137 12 2135 120 7 3 chr11 75931964 75932263 -74851290 + AluSx SINE Alu 1 300 -12 253 178 0 0 chr11 75932270 75932315 -74851238 + Alu SINE Alu 1 45 -255 * 552 230 171 22 chr11 75932305 75932527 -74851026 - Charlie1 DNA MER1_type -238 2523 2269 1361 244 50 10 chr11 75932565 75932963 -74850590 - Charlie1 DNA MER1_type -600 2161 1748 243 0 0 0 chr11 75933049 75933076 -74850477 + (T)n Simple_repeat Simple_repeat 1 27 0 2142 121 0 10 chr11 75933231 75933536 -74850017 + AluSx SINE Alu 1 302 -10 2071 149 3 0 chr11 75933637 75933946 -74849607 + AluSx SINE Alu 1 310 -2 351 231 0 0 chr11 75933954 75934019 -74849534 - Tigger3(Golem) DNA MER2_type -2964 65 1 306 270 9 18 chr11 75934019 75934130 -74849423 + (TA)n Simple_repeat Simple_repeat 1 110 0 217 230 200 30 chr11 75934322 75934457 -74849096 - MIR SINE MIR -70 192 35 2480 75 7 0 chr11 75934529 75934835 -74848718 - AluY SINE Alu -3 308 1 1062 181 6 0 chr11 75935208 75935385 -74848168 - AluJb SINE Alu -3 309 132 1407 172 0 4 chr11 75935403 75935636 -74847917 + AluSx SINE Alu 1 232 -80 312 325 49 8 chr11 75935912 75936035 -74847518 + MIR SINE MIR 18 145 -117 738 120 0 0 chr11 75936040 75936140 -74847413 + AluS SINE Alu 2 101 -211 3858 192 46 54 chr11 75936142 75937119 -74846434 - LTR5 LTR ERVK 0 969 1 1557 189 43 60 chr11 75937123 75937864 -74845689 + LTR13 LTR ERVK 1 781 -226 2387 104 0 3 chr11 75938611 75938920 -74844633 + AluSx SINE Alu 1 308 -4 2319 87 7 3 chr11 75939585 75939883 -74843670 - AluSc SINE Alu -10 299 1 2175 147 0 0 chr11 75942245 75942551 -74841002 + AluSq SINE Alu 1 306 -7 324 332 142 43 chr11 75942742 75943067 -74840486 + L1M4 LINE L1 2353 2709 -3437 2892 218 95 117 chr11 75943805 75944039 -74839514 + L1M4 LINE L1 2650 2888 -3258 1893 107 4 15 chr11 75944039 75944310 -74839243 - AluSx SINE Alu -40 272 5 2892 218 95 117 chr11 75944310 75944473 -74839080 + L1M4 LINE L1 2888 3053 -3093 2186 125 0 3 chr11 75944473 75944776 -74838777 + AluSx SINE Alu 1 302 -10 2892 218 95 117 chr11 75944776 75944993 -74838560 + L1M4 LINE L1 3053 3273 -2873 1626 119 9 0 chr11 75944993 75945220 -74838333 + AluSg/x SINE Alu 81 309 -1 741 200 8 0 chr11 75945227 75945357 -74838196 + FLAM_A SINE Alu 1 131 -2 2892 218 95 117 chr11 75945357 75945610 -74837943 + L1M4 LINE L1 3279 3536 -2610 180 0 0 0 chr11 75945610 75945630 -74837923 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 2892 218 95 117 chr11 75945630 75946072 -74837481 + L1M4 LINE L1 3536 3986 -2160 885 145 0 7 chr11 75946072 75946210 -74837343 + FLAM_C SINE Alu 1 137 -6 2892 218 95 117 chr11 75946210 75946603 -74836950 + L1M4 LINE L1 3986 4460 -1686 1955 150 0 7 chr11 75947009 75947309 -74836244 - AluJb SINE Alu -14 298 1 188 33 0 33 chr11 75948293 75948323 -74835230 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 798 163 8 0 chr11 75951140 75951269 -74832284 + FLAM_A SINE Alu 2 131 -2 1892 175 0 10 chr11 75951348 75951662 -74831891 + AluJo SINE Alu 1 311 -1 846 278 64 34 chr11 75951734 75952061 -74831492 + L1ME3A LINE L1 5834 6170 0 835 113 0 16 chr11 75952235 75952359 -74831194 + FLAM_C SINE Alu 1 122 -21 912 144 0 7 chr11 75953101 75953240 -74830313 + AluJo SINE Alu 1 138 -174 1522 205 3 36 chr11 75953242 75953545 -74830008 + AluJo SINE Alu 6 298 -14 1137 198 0 9 chr11 75953644 75953939 -74829614 - MER2 DNA MER2_type 0 345 2 895 141 0 8 chr11 75955849 75955977 -74827576 + AluSq/x SINE Alu 1 127 -186 433 168 9 84 chr11 75955978 75956085 -74827468 + AluJb SINE Alu 211 309 -3 2117 108 3 14 chr11 75956640 75956927 -74826626 + AluSx SINE Alu 1 284 -28 2600 53 0 3 chr11 75957276 75957575 -74825978 + AluY SINE Alu 1 298 -13 742 281 27 9 chr11 75958453 75958674 -74824879 - MIR SINE MIR -24 238 14 1520 87 0 0 chr11 75959959 75960144 -74823409 + AluSg SINE Alu 1 185 -125 563 141 0 12 chr11 75960144 75960224 -74823329 + AluSg SINE Alu 219 297 -13 804 220 19 0 chr11 75961770 75961929 -74821624 - FAM SINE Alu -12 163 2 256 257 66 0 chr11 75962304 75962440 -74821113 + (CACCC)n Simple_repeat Simple_repeat 4 148 0 356 303 119 0 chr11 75962874 75962983 -74820570 - MIR SINE MIR -104 158 37 233 338 59 29 chr11 75963044 75963180 -74820373 + L3 LINE CR1 1241 1380 -197 659 200 26 32 chr11 75963402 75963483 -74820070 + MIR SINE MIR 108 189 -73 1377 185 13 0 chr11 75963483 75963715 -74819838 + MER46A DNA MER2_type 1 235 -1 659 200 26 32 chr11 75963715 75963788 -74819765 + MIR SINE MIR 189 261 -1 792 114 8 45 chr11 75965675 75965807 -74817746 - FLAM_C SINE Alu -6 127 1 201 74 0 0 chr11 75965990 75966017 -74817536 + (T)n Simple_repeat Simple_repeat 1 27 0 240 86 0 0 chr11 75966301 75966336 -74817217 + (A)n Simple_repeat Simple_repeat 1 35 0 25 0 0 0 chr11 75966691 75966716 -74816837 + AT_rich Low_complexity Low_complexity 1 25 0 1900 126 58 36 chr11 75966843 75967208 -74816345 + THE1C LTR MaLR 3 375 0 378 273 23 83 chr11 75967297 75967513 -74816040 + L1ME4a LINE L1 5868 6070 -51 1705 160 30 0 chr11 75967976 75968239 -74815314 - AluJb SINE Alu -21 291 21 403 298 150 33 chr11 75968266 75968686 -74814867 + L2 LINE L2 2344 2812 -502 284 266 51 0 chr11 75968712 75968791 -74814762 - MIR SINE MIR -28 234 152 311 284 83 9 chr11 75969391 75969500 -74814053 + MER5B DNA MER1_type 17 133 -45 1672 170 0 83 chr11 75969512 75969848 -74813705 + AluJb SINE Alu 1 308 -4 1944 148 13 10 chr11 75969859 75970164 -74813389 + AluJb SINE Alu 1 306 -6 216 0 0 0 chr11 75970289 75970313 -74813240 + (A)n Simple_repeat Simple_repeat 1 24 0 1987 109 4 0 chr11 75970821 75971087 -74812466 - AluSp SINE Alu -10 303 37 2408 87 0 0 chr11 75971467 75971765 -74811788 + AluSc SINE Alu 1 298 -11 1795 169 38 27 chr11 75972115 75972483 -74811070 - L1MB7 LINE L1 -1 6183 5812 2233 99 7 3 chr11 75972682 75972975 -74810578 + AluSx SINE Alu 1 294 -18 1411 166 123 11 chr11 75973202 75973365 -74810188 - AluJo SINE Alu -4 308 165 216 0 0 0 chr11 75973365 75973389 -74810164 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1411 166 123 11 chr11 75973389 75973502 -74810051 - AluJo SINE Alu -147 165 1 21 57 0 0 chr11 75973670 75973705 -74809848 + AT_rich Low_complexity Low_complexity 1 35 0 2296 104 3 0 chr11 75973804 75974101 -74809452 + AluSp SINE Alu 1 298 -15 1491 200 27 30 chr11 75974209 75974509 -74809044 - AluJo SINE Alu -13 299 1 765 255 175 11 chr11 75974701 75975066 -74808487 - L1MC4a LINE L1 -1909 5899 5475 638 196 74 0 chr11 75975548 75975711 -74807842 + MER20B DNA MER1_type 540 714 -69 21 36 0 0 chr11 75975711 75975739 -74807814 + AT_rich Low_complexity Low_complexity 1 28 0 644 192 72 16 chr11 75975803 75975996 -74807557 + Tigger6 DNA MER2_type 1348 1551 -46 252 190 63 101 chr11 75976025 75976104 -74807449 + Tigger6 DNA MER2_type 1521 1596 -1 1766 171 20 0 chr11 75976482 75976780 -74806773 + AluJb SINE Alu 1 304 -8 1427 163 14 25 chr11 75977407 75977684 -74805869 - MER21B LTR ERV1 -129 734 461 827 168 0 0 chr11 75977684 75977803 -74805750 + FLAM_C SINE Alu 1 119 -24 1903 201 54 58 chr11 75977808 75978116 -74805437 - MER21B LTR ERV1 -382 481 174 2433 87 6 6 chr11 75978116 75978428 -74805125 - AluSx SINE Alu 0 312 1 1903 201 54 58 chr11 75978428 75978602 -74804951 - MER21B LTR ERV1 -689 174 1 784 155 16 16 chr11 75979250 75979379 -74804174 + FLAM_A SINE Alu 5 133 0 396 254 140 21 chr11 75980567 75980760 -74802793 - MIR SINE MIR -3 259 44 230 330 91 41 chr11 75980880 75981077 -74802476 - MIR SINE MIR -11 251 45 2314 69 3 23 chr11 75981318 75981621 -74801932 + AluY SINE Alu 1 297 -14 1008 149 6 17 chr11 75981628 75981802 -74801751 + AluSc SINE Alu 138 309 0 2248 127 0 0 chr11 75982902 75983201 -74800352 - AluJb SINE Alu -13 299 1 339 219 7 82 chr11 75984221 75984367 -74799186 + LTR67 LTR ERVL 1 135 -422 274 225 62 12 chr11 75984440 75984520 -74799033 + LTR67 LTR ERVL 426 509 -48 1889 174 10 3 chr11 75984721 75985031 -74798522 - AluJo SINE Alu 0 312 1 404 235 82 0 chr11 75985137 75985235 -74798318 - MIR SINE MIR 0 262 157 26 0 0 0 chr11 75985422 75985448 -74798105 + GC_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr11 75985466 75985492 -74798061 + (A)n Simple_repeat Simple_repeat 1 26 0 782 188 59 0 chr11 75985496 75985666 -74797887 + L1MA4 LINE L1 6117 6296 -4 1238 278 176 48 chr11 75986017 75987207 -74796346 + L2 LINE L2 1309 2650 -664 707 255 49 39 chr11 75987266 75987552 -74796001 + MLT1F1 LTR MaLR 8 296 -271 386 284 60 2 chr11 75987569 75987706 -74795847 + MLT1F1 LTR MaLR 437 560 -7 452 207 56 9 chr11 75989113 75989268 -74794285 + L1MA4 LINE L1 5953 6109 -191 2150 117 3 3 chr11 75989281 75989572 -74793981 + AluSx SINE Alu 2 292 -20 180 0 0 0 chr11 75989821 75989841 -74793712 + (T)n Simple_repeat Simple_repeat 1 20 0 1920 142 33 16 chr11 75990076 75990379 -74793174 - AluJb SINE Alu -4 308 1 2422 83 0 13 chr11 75990942 75991255 -74792298 - AluSg SINE Alu -1 309 1 1831 152 0 24 chr11 75991258 75991554 -74791999 - AluJo SINE Alu -17 295 7 22 35 0 0 chr11 75992520 75992549 -74791004 + AT_rich Low_complexity Low_complexity 1 29 0 1287 160 13 34 chr11 75993137 75993374 -74790179 - AluJo SINE Alu -16 296 65 552 251 36 62 chr11 75993382 75993657 -74789896 + L2 LINE L2 2383 2650 -664 707 255 49 39 chr11 75993716 75994002 -74789551 + MLT1F1 LTR MaLR 8 296 -271 386 284 60 2 chr11 75994019 75994156 -74789397 + MLT1F1 LTR MaLR 437 560 -7 452 207 56 9 chr11 75995562 75995717 -74787836 + L1MA4 LINE L1 5953 6109 -191 1806 119 4 8 chr11 75995730 75995982 -74787571 + AluSx SINE Alu 2 252 -60 21 0 0 0 chr11 75996309 75996330 -74787223 + GC_rich Low_complexity Low_complexity 1 21 0 2264 101 3 0 chr11 75996655 75996951 -74786602 - AluSp SINE Alu -16 297 1 296 299 13 13 chr11 75996951 75997028 -74786525 - L2 LINE L2 -10 3262 3186 207 139 0 0 chr11 75997335 75997371 -74786182 - L2 LINE L2 0 3313 3278 2293 109 7 0 chr11 75997442 75997744 -74785809 + AluSx SINE Alu 1 304 -8 1603 167 72 4 chr11 75997748 75998024 -74785529 + AluJo SINE Alu 1 295 -17 2678 46 0 0 chr11 75998231 75998535 -74785018 + AluY SINE Alu 1 304 -7 370 288 102 70 chr11 75998574 75998859 -74784694 - L2 LINE L2 -1 3271 2978 566 39 0 13 chr11 75998934 75999012 -74784541 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 2170 140 0 0 chr11 75999843 76000150 -74783403 - AluSx SINE Alu -5 307 1 2072 141 0 0 chr11 76000401 76000699 -74782854 + AluJo SINE Alu 1 298 -14 2404 107 0 0 chr11 76000896 76001204 -74782349 + AluSx SINE Alu 1 308 -4 1372 133 15 0 chr11 76001361 76001564 -74781989 - AluSq SINE Alu -10 303 98 2166 132 0 6 chr11 76001676 76001987 -74781566 - AluSx SINE Alu -3 309 1 2514 79 3 0 chr11 76001998 76002302 -74781251 - AluY SINE Alu -6 305 1 1610 162 67 35 chr11 76002506 76002852 -74780701 + MLT1B LTR MaLR 1 357 -33 347 240 0 77 chr11 76003180 76003284 -74780269 + L2 LINE L2 3177 3272 0 1815 155 9 40 chr11 76003370 76003692 -74779861 + AluJo SINE Alu 1 312 0 2067 110 0 52 chr11 76003698 76004008 -74779545 + AluSq SINE Alu 4 297 -16 21 0 0 0 chr11 76004333 76004354 -74779199 + GC_rich Low_complexity Low_complexity 1 21 0 2407 78 0 10 chr11 76004493 76004789 -74778764 - AluSg SINE Alu -17 293 1 1625 168 73 0 chr11 76004792 76005066 -74778487 - AluJo SINE Alu -18 294 1 1423 139 78 61 chr11 76005694 76005797 -74777756 + AluJo SINE Alu 1 101 -211 1447 196 3 29 chr11 76005797 76006103 -74777450 - AluJb SINE Alu -14 298 1 1423 139 78 61 chr11 76006103 76006293 -74777260 + AluJo SINE Alu 101 299 -13 21 0 0 0 chr11 76006460 76006481 -74777072 + AT_rich Low_complexity Low_complexity 1 21 0 5193 89 35 11 chr11 76006898 76007658 -74775895 + L1PA13 LINE L1 5385 6163 0 2378 50 0 7 chr11 76007948 76008250 -74775303 - AluY SINE Alu -10 301 2 2080 135 0 6 chr11 76009781 76010092 -74773461 - AluSx SINE Alu -3 309 1 1953 135 0 0 chr11 76010095 76010413 -74773140 - AluSx SINE Alu 0 312 1 1814 138 11 65 chr11 76010490 76010629 -74772924 - L1MB3 LINE L1 -1 6182 6037 2193 100 10 0 chr11 76010629 76010938 -74772615 - AluSp SINE Alu 0 313 2 1814 138 11 65 chr11 76010938 76011153 -74772400 - L1MB3 LINE L1 -146 6037 5847 2022 127 0 13 chr11 76011161 76011476 -74772077 - AluJb SINE Alu -1 311 1 1678 197 96 32 chr11 76011519 76011926 -74771627 + MER99 DNA DNA 201 633 -195 349 206 0 0 chr11 76011923 76011986 -74771567 - AluJ/FRAM SINE Alu -7 295 233 * 396 0 0 0 chr11 76011995 76012039 -74771514 + (T)n Simple_repeat Simple_repeat 1 44 0 2145 93 0 3 chr11 76012261 76012552 -74771001 + AluSg SINE Alu 1 290 -20 1958 139 20 0 chr11 76012561 76012855 -74770698 + AluSx SINE Alu 1 300 -12 2153 125 0 0 chr11 76012969 76013280 -74770273 + AluSx SINE Alu 1 311 -1 35 95 0 0 chr11 76013952 76014057 -74769496 + AT_rich Low_complexity Low_complexity 1 105 0 761 241 55 50 chr11 76017406 76017626 -74765927 - MER58A DNA MER1_type -3 221 1 1931 136 3 13 chr11 76017692 76017993 -74765560 + AluSx SINE Alu 1 298 -14 982 188 209 0 chr11 76019156 76019430 -74764123 - MER33 DNA MER1_type 0 324 1 762 145 30 15 chr11 76020959 76021090 -74762463 - FLAM_C SINE Alu 0 133 1 1996 114 13 7 chr11 76021202 76021500 -74762053 + AluSq SINE Alu 1 300 -13 673 124 107 25 chr11 76021500 76021621 -74761932 + FLAM_C SINE Alu 2 132 -1 1296 218 10 14 chr11 76021634 76021928 -74761625 + AluJo SINE Alu 5 297 -15 455 243 82 37 chr11 76022194 76022331 -74761222 - MLT1F1 LTR MaLR -7 642 437 768 255 49 39 chr11 76022348 76022634 -74760919 - MLT1F1 LTR MaLR -271 296 8 544 257 80 45 chr11 76022693 76022981 -74760572 - L2 LINE L2 -664 2650 2353 1176 167 9 18 chr11 76022991 76023213 -74760340 + AluJo SINE Alu 77 296 -16 22 35 0 0 chr11 76023801 76023830 -74759723 + AT_rich Low_complexity Low_complexity 1 29 0 1686 152 0 24 chr11 76024796 76025092 -74758461 + AluJo SINE Alu 7 295 -17 2276 85 0 3 chr11 76025095 76025400 -74758153 + AluSg SINE Alu 1 304 -6 1772 142 33 16 chr11 76025971 76026274 -74757279 + AluJb SINE Alu 1 308 -4 253 638 0 31 chr11 76026509 76026669 -74756884 + A-rich Low_complexity Low_complexity 1 155 0 787 188 59 0 chr11 76026673 76026843 -74756710 + L1MA4 LINE L1 6117 6296 -4 1171 278 176 47 chr11 76027194 76028383 -74755170 + L2 LINE L2 1309 2650 -664 768 255 49 39 chr11 76028442 76028728 -74754825 + MLT1F1 LTR MaLR 8 296 -271 455 243 82 37 chr11 76028745 76028882 -74754671 + MLT1F1 LTR MaLR 437 560 -7 1296 218 10 14 chr11 76029148 76029442 -74754111 - AluJo SINE Alu -15 297 5 673 124 107 25 chr11 76029455 76029576 -74753977 - FLAM_C SINE Alu -1 132 2 2022 111 13 7 chr11 76029576 76029874 -74753679 - AluSq SINE Alu -13 300 1 762 145 30 15 chr11 76029986 76030117 -74753436 + FLAM_C SINE Alu 1 133 0 982 188 209 0 chr11 76031646 76031920 -74751633 + MER33 DNA MER1_type 1 324 0 1940 136 3 13 chr11 76033083 76033385 -74750168 - AluSx SINE Alu -13 299 1 761 241 55 50 chr11 76033451 76033671 -74749882 + MER58A DNA MER1_type 1 221 -3 35 95 0 0 chr11 76037021 76037126 -74746427 + AT_rich Low_complexity Low_complexity 1 105 0 2153 125 0 0 chr11 76037798 76038109 -74745444 - AluSx SINE Alu -1 311 1 381 153 0 0 chr11 76038223 76038282 -74745271 - Alu SINE Alu -2 300 242 2273 77 0 10 chr11 76038358 76038655 -74744898 - AluSg SINE Alu -16 294 1 1491 168 73 0 chr11 76038658 76038932 -74744621 - AluJo SINE Alu -18 294 1 1423 139 78 61 chr11 76039560 76039663 -74743890 + AluJo SINE Alu 1 101 -211 1350 218 7 23 chr11 76039663 76039966 -74743587 - AluJb SINE Alu -14 298 1 1423 139 78 61 chr11 76039966 76040156 -74743397 + AluJo SINE Alu 101 299 -13 21 0 0 0 chr11 76040323 76040344 -74743209 + AT_rich Low_complexity Low_complexity 1 21 0 5193 89 35 11 chr11 76040761 76041521 -74742032 + L1PA13 LINE L1 5385 6163 0 2378 50 0 7 chr11 76041811 76042113 -74741440 - AluY SINE Alu -10 301 2 2114 126 0 3 chr11 76043644 76043954 -74739599 - AluSx SINE Alu -3 309 1 301 102 356 0 chr11 76044314 76044373 -74739180 + MADE1 DNA Mariner 1 80 0 826 203 85 0 chr11 76045617 76045770 -74737783 - AluJb SINE Alu -10 302 137 1030 275 235 21 chr11 76045822 76046342 -74737211 + L1M4b LINE L1 11 641 -6218 258 319 149 25 chr11 76046416 76046692 -74736861 + L1M4b LINE L1 800 1109 -5750 313 222 0 14 chr11 76046694 76046766 -74736787 + L1M4b LINE L1 1171 1241 -5618 2060 91 3 34 chr11 76047419 76047717 -74735836 + AluSp SINE Alu 1 289 -24 381 265 66 103 chr11 76047771 76048111 -74735442 - L1M4c LINE L1 -1277 1466 889 1419 198 90 29 chr11 76048252 76048596 -74734957 - MLT1A1 LTR MaLR 0 365 1 1559 120 67 60 chr11 76048861 76049161 -74734392 + AluJb SINE Alu 1 302 -10 2091 291 219 9 chr11 76050199 76051670 -74731883 - L2 LINE L2 -608 2706 928 2116 145 10 49 chr11 76053187 76053226 -74730327 + L1MB3 LINE L1 5792 5831 -381 2016 130 0 10 chr11 76053226 76053534 -74730019 + AluSq SINE Alu 1 305 -8 2116 145 10 49 chr11 76053534 76053931 -74729622 + L1MB3 LINE L1 5831 6212 0 1272 219 43 64 chr11 76055018 76055109 -74728444 + MLT1C LTR MaLR 2 93 -374 1116 88 0 14 chr11 76055109 76055418 -74728135 + AluSx SINE Alu 1 307 0 1272 219 43 64 chr11 76055418 76055534 -74728019 + MLT1C LTR MaLR 93 210 -257 2225 145 0 0 chr11 76055534 76055844 -74727709 + AluSx SINE Alu 1 310 -2 1272 219 43 64 chr11 76055844 76056125 -74727428 + MLT1C LTR MaLR 210 467 0 1963 141 3 3 chr11 76056126 76056439 -74727114 - AluJb SINE Alu 0 313 1 190 242 0 110 chr11 76056800 76056891 -74726662 + MIR SINE MIR 51 131 -131 402 331 38 11 chr11 76057460 76057644 -74725909 + L2 LINE L2 2862 3050 -263 267 278 218 20 chr11 76057844 76058092 -74725461 - L2 LINE L2 -52 3220 2924 1980 160 126 8 chr11 76058120 76058501 -74725052 + MSTA LTR MaLR 3 428 0 2112 136 7 3 chr11 76058516 76058825 -74724728 - AluSx SINE Alu -1 311 2 366 250 192 0 chr11 76059718 76059838 -74723715 + MIR SINE MIR 31 173 -89 2187 139 0 0 chr11 76060200 76060503 -74723050 + AluSx SINE Alu 1 303 -9 1364 219 103 26 chr11 76060843 76061272 -74722281 + MLT1C LTR MaLR 6 467 0 275 306 90 0 chr11 76061661 76061772 -74721781 + L1MC4 LINE L1 7782 7902 -140 2307 89 14 3 chr11 76061916 76062207 -74721346 + AluSg SINE Alu 1 294 -16 199 277 59 109 chr11 76062786 76062870 -74720683 + L2 LINE L2 3200 3278 -35 1670 140 95 110 chr11 76062870 76063205 -74720348 + MSTD LTR MaLR 1 331 -65 2133 134 0 13 chr11 76063205 76063512 -74720041 + AluSx SINE Alu 10 312 0 1670 140 95 110 chr11 76063512 76063575 -74719978 + MSTD LTR MaLR 331 393 -3 199 277 59 109 chr11 76063575 76063609 -74719944 + L2 LINE L2 3278 3312 -1 188 214 18 0 chr11 76063620 76063676 -74719877 + (TGGG)n Simple_repeat Simple_repeat 4 60 0 31 26 0 0 chr11 76063916 76063954 -74719599 + AT_rich Low_complexity Low_complexity 1 38 0 227 197 152 0 chr11 76064014 76064080 -74719473 + L2 LINE L2 3230 3305 -8 2527 64 0 0 chr11 76064122 76064417 -74719136 + AluY SINE Alu 1 295 -16 1522 180 32 44 chr11 76064701 76064874 -74718679 - AluJo SINE Alu 0 312 143 1950 152 7 10 chr11 76064874 76065183 -74718370 - AluSx SINE Alu -4 308 1 1522 180 32 44 chr11 76065183 76065325 -74718228 - AluJo SINE Alu -169 143 1 1929 151 0 26 chr11 76066175 76066479 -74717074 - AluJb SINE Alu -16 296 1 1797 186 93 2 chr11 76066633 76067052 -74716501 + MLT1D LTR MaLR 32 488 -17 199 152 196 0 chr11 76067069 76067115 -74716438 - L2 LINE L2 -1017 2297 2243 2264 108 0 10 chr11 76067757 76068063 -74715490 + AluSx SINE Alu 1 303 -9 25 31 0 0 chr11 76068409 76068441 -74715112 + AT_rich Low_complexity Low_complexity 1 32 0 354 222 0 0 chr11 76068450 76068513 -74715040 + AluJ/FRAM SINE Alu 233 295 -7 * 1637 196 91 32 chr11 76068510 76068919 -74714634 - MER99 DNA DNA -195 633 201 2179 127 0 13 chr11 76068962 76069277 -74714276 + AluJb SINE Alu 1 311 -1 1827 138 11 62 chr11 76069285 76069499 -74714054 + L1MB3 LINE L1 5847 6037 -146 2293 110 10 0 chr11 76069499 76069809 -74713744 + AluSp SINE Alu 1 313 0 1827 138 11 62 chr11 76069809 76069948 -74713605 + L1MB3 LINE L1 6037 6182 -1 1144 171 5 48 chr11 76069979 76070025 -74713528 + AluJo SINE Alu 92 138 -174 2101 135 0 0 chr11 76070025 76070343 -74713210 + AluSx SINE Alu 1 312 0 2266 125 0 7 chr11 76070346 76070651 -74712902 + AluSx SINE Alu 1 303 -9 1144 171 5 48 chr11 76070651 76070810 -74712743 + AluJo SINE Alu 140 292 -20 22 94 0 0 chr11 76070967 76071031 -74712522 + AT_rich Low_complexity Low_complexity 1 64 0 1967 142 38 0 chr11 76071083 76071372 -74712181 + AluSx SINE Alu 1 300 -12 2260 95 3 0 chr11 76071652 76071983 -74711570 + AluSx SINE Alu 1 332 0 2022 112 43 20 chr11 76072005 76072310 -74711243 - AluSx SINE Alu 0 312 1 332 224 35 0 chr11 76072310 76072395 -74711158 + MER99 DNA DNA 739 826 -2 556 266 91 25 chr11 76072676 76072875 -74710678 - MIR SINE MIR -42 220 9 364 144 140 12 chr11 76072996 76073100 -74710453 - MIR SINE MIR -62 146 40 342 318 56 46 chr11 76073485 76073680 -74709873 + MIR SINE MIR 20 216 -46 2136 121 3 13 chr11 76073789 76074096 -74709457 - AluSx SINE Alu -8 304 1 217 131 0 0 chr11 76074196 76074233 -74709320 + MIR SINE MIR 116 151 -111 740 75 0 0 chr11 76074257 76074350 -74709203 - AluSg/x SINE Alu -14 295 203 2374 109 0 0 chr11 76074381 76074683 -74708870 + AluSx SINE Alu 1 302 -10 307 271 8 98 chr11 76074822 76074944 -74708609 + MIR SINE MIR 30 140 -68 333 287 42 14 chr11 76075565 76075708 -74707845 - L1ME4a LINE L1 0 6121 5975 289 150 117 0 chr11 76076063 76076123 -74707430 - L1ME1 LINE L1 -49 6117 6051 2111 96 36 4 chr11 76076148 76076429 -74707124 + AluSx SINE Alu 1 290 -22 1806 181 3 16 chr11 76076580 76076894 -74706659 + AluJb SINE Alu 1 310 -2 626 201 8 37 chr11 76077109 76077243 -74706310 - AluJo SINE Alu -176 136 7 331 241 42 120 chr11 76077323 76077413 -74706140 - L1MEc LINE L1 -4573 1823 1728 2310 125 3 0 chr11 76077413 76077724 -74705829 - AluSx SINE Alu 0 312 1 331 241 42 120 chr11 76077724 76077842 -74705711 - L1MEc LINE L1 -4668 1728 1602 2244 110 0 0 chr11 76077842 76078142 -74705411 - AluSc SINE Alu -9 300 1 675 195 8 0 chr11 76078142 76078265 -74705288 - AluJo/FLAM SINE Alu -174 128 5 331 241 42 120 chr11 76078265 76078478 -74705075 - L1MEc LINE L1 -4792 1604 1433 809 191 168 16 chr11 76079511 76079640 -74703913 - AluJo SINE Alu -7 295 187 315 85 0 0 chr11 76079640 76079687 -74703866 + (TG)n Simple_repeat Simple_repeat 2 48 0 809 191 168 16 chr11 76079687 76079813 -74703740 - AluJo SINE Alu -115 187 1 1814 161 4 0 chr11 76079846 76080120 -74703433 - AluJb SINE Alu -25 287 13 310 236 69 0 chr11 76080122 76080194 -74703359 + L1ME3A LINE L1 1995 2071 -4355 2346 107 0 0 chr11 76080211 76080509 -74703044 + AluSq SINE Alu 1 298 -15 1603 185 0 15 chr11 76080523 76080788 -74702765 - AluJo SINE Alu -47 265 5 355 273 80 0 chr11 76080809 76080985 -74702568 - L1MEc LINE L1 -5099 1106 917 670 219 0 0 chr11 76082268 76082387 -74701166 - FLAM_A SINE Alu -14 119 1 243 0 0 0 chr11 76082443 76082470 -74701083 + (T)n Simple_repeat Simple_repeat 1 27 0 1192 282 62 86 chr11 76082575 76083313 -74700240 + L1ME3A LINE L1 3421 4135 -2291 1015 185 0 0 chr11 76083313 76083475 -74700078 + FRAM SINE Alu 5 166 0 1192 282 62 86 chr11 76083475 76083630 -74699923 + L1ME3A LINE L1 4135 4292 -2134 686 198 0 0 chr11 76083631 76083752 -74699801 + FLAM_C SINE Alu 1 121 -12 2080 243 102 35 chr11 76083752 76084646 -74698907 + L1ME3A LINE L1 5003 6022 -428 1592 114 0 0 chr11 76084646 76084856 -74698697 + AluJb SINE Alu 85 294 -18 2080 243 102 35 chr11 76084856 76085298 -74698255 + L1ME3A LINE L1 6022 6433 -17 2043 95 77 0 chr11 76086314 76086587 -74696966 - AluSx SINE Alu -18 294 1 4869 28 0 6 chr11 76087751 76088281 -74695272 + SVA Other Other 860 1386 0 1981 130 17 17 chr11 76088591 76088891 -74694662 + AluJb SINE Alu 1 300 -12 197 344 33 0 chr11 76089716 76089777 -74693776 - L2 LINE L2 -25 3247 3185 563 264 103 23 chr11 76090010 76090184 -74693369 + MIR SINE MIR 28 215 -47 202 254 85 0 chr11 76090227 76090286 -74693267 + L2 LINE L2 3241 3304 -9 275 221 177 9 chr11 76090299 76090412 -74693141 - MIR SINE MIR -109 153 22 1825 144 3 53 chr11 76090550 76090697 -74692856 + AluJb SINE Alu 1 125 -187 2425 67 7 7 chr11 76090697 76090997 -74692556 + AluSc SINE Alu 1 300 -9 1825 144 3 53 chr11 76090997 76091168 -74692385 + AluJb SINE Alu 125 303 -9 2150 107 10 3 chr11 76091649 76091938 -74691615 + AluSp SINE Alu 1 291 -22 443 235 10 0 chr11 76092383 76092481 -74691072 + MER94 DNA DNA 36 134 0 299 262 47 9 chr11 76092487 76092594 -74690959 + L1MC4a LINE L1 6063 6173 -1635 1947 148 3 3 chr11 76092595 76092886 -74690667 - AluJb SINE Alu -21 291 1 815 157 0 0 chr11 76092916 76093037 -74690516 - FLAM_A SINE Alu -11 122 2 295 215 17 11 chr11 76093053 76093148 -74690405 + AluSp SINE Alu 140 183 -120 1070 235 82 45 chr11 76093482 76093563 -74689990 + L1MC4 LINE L1 6573 6650 -1392 2120 123 3 16 chr11 76093563 76093872 -74689681 + AluSx SINE Alu 1 305 -7 1070 235 82 45 chr11 76093872 76094313 -74689240 + L1MC4 LINE L1 6650 7232 -810 2347 87 7 0 chr11 76094467 76094767 -74688786 + AluSg1 SINE Alu 1 302 -7 1513 191 7 34 chr11 76094914 76095208 -74688345 + AluJb SINE Alu 24 309 -3 783 152 22 14 chr11 76095209 76095347 -74688206 + AluJ SINE Alu 2 140 -172 935 133 7 0 chr11 76095684 76095819 -74687734 + AluJ SINE Alu 1 136 -176 437 189 11 0 chr11 76095820 76095915 -74687638 + (TATATG)n Simple_repeat Simple_repeat 6 101 0 907 134 189 0 chr11 76095927 76096091 -74687462 + AluJ SINE Alu 118 312 0 183 80 0 0 chr11 76096219 76096244 -74687309 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 2185 113 3 0 chr11 76096434 76096727 -74686826 + AluSx SINE Alu 1 294 -18 199 266 47 16 chr11 76097096 76097160 -74686393 + L2 LINE L2 3193 3258 -14 2325 70 39 0 chr11 76097289 76097573 -74685980 - AluSg SINE Alu -14 296 2 183 300 77 94 chr11 76097643 76097723 -74685830 + L2 LINE L2 2628 2708 -606 1687 102 34 4 chr11 76097723 76098000 -74685553 + AluSx SINE Alu 39 322 0 183 300 77 94 chr11 76098000 76098268 -74685285 + L2 LINE L2 2708 2971 -343 559 76 13 0 chr11 76098932 76099011 -74684542 - MADE1 DNA Mariner 0 80 1 403 182 91 0 chr11 76099047 76099135 -74684418 - MER20 DNA MER1_type -8 211 116 183 375 58 0 chr11 76099319 76099423 -74684130 + L2 LINE L2 2572 2681 -633 2333 116 0 0 chr11 76099850 76100152 -74683401 + AluSq SINE Alu 4 305 -8 2018 107 0 33 chr11 76100152 76100450 -74683103 + AluY SINE Alu 1 289 -22 1773 187 3 16 chr11 76100599 76100914 -74682639 + AluJb SINE Alu 1 311 -1 191 114 29 0 chr11 76100930 76100965 -74682588 + GA-rich Low_complexity Low_complexity 6 41 0 * 629 76 11 0 chr11 76100959 76101051 -74682502 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 370 288 102 70 chr11 76101106 76101391 -74682162 + L2 LINE L2 2978 3271 -1 2678 46 0 0 chr11 76101430 76101734 -74681819 - AluY SINE Alu -7 304 1 1603 167 72 4 chr11 76101941 76102217 -74681336 - AluJo SINE Alu -17 295 1 2293 109 7 0 chr11 76102221 76102523 -74681030 - AluSx SINE Alu -8 304 1 207 139 0 0 chr11 76102594 76102630 -74680923 + L2 LINE L2 3278 3313 0 271 280 40 13 chr11 76102937 76103012 -74680541 + L2 LINE L2 3186 3262 -10 2108 118 7 13 chr11 76103012 76103318 -74680235 + AluSx SINE Alu 1 304 -8 342 318 56 46 chr11 76103427 76103622 -74679931 - MIR SINE MIR -46 216 20 364 144 140 12 chr11 76104007 76104111 -74679442 + MIR SINE MIR 40 154 -62 556 266 91 25 chr11 76104231 76104430 -74679123 + MIR SINE MIR 9 220 -42 338 224 35 0 chr11 76104711 76104796 -74678757 - MER99 DNA DNA -2 826 739 2156 100 47 7 chr11 76104796 76105096 -74678457 + AluSq SINE Alu 1 312 -1 24 0 0 0 chr11 76105098 76105122 -74678431 + GC_rich Low_complexity Low_complexity 1 24 0 2046 156 0 0 chr11 76106183 76106490 -74677063 - AluSx SINE Alu -5 307 1 2093 141 0 0 chr11 76106741 76107039 -74676514 + AluJo SINE Alu 1 298 -14 2261 94 3 3 chr11 76107236 76107535 -74676018 + AluSx SINE Alu 1 299 -13 1029 156 6 17 chr11 76107535 76107715 -74675838 + AluSc SINE Alu 132 309 0 2259 127 0 0 chr11 76108814 76109113 -74674440 - AluJb SINE Alu -13 299 1 2269 124 20 0 chr11 76110005 76110311 -74673242 - AluSx SINE Alu 0 312 1 2298 93 0 3 chr11 76110320 76110611 -74672942 - AluSg SINE Alu -20 290 1 246 308 75 0 chr11 76110611 76110731 -74672822 + MER99 DNA DNA 621 749 -79 2398 49 0 23 chr11 76110731 76111037 -74672516 - AluY SINE Alu -10 301 3 455 180 86 8 chr11 76111150 76111278 -74672275 + L1PA15-16 LINE L1 2701 2838 -4011 1245 137 0 0 chr11 76111278 76111446 -74672107 + AluSc SINE Alu 133 300 -9 366 119 0 30 chr11 76111446 76111513 -74672040 + L1PA15-16 LINE L1 2829 2893 -3956 2398 98 0 3 chr11 76111513 76111820 -74671733 + AluY SINE Alu 1 306 -5 443 189 99 0 chr11 76111820 76111931 -74671622 + L1P4 LINE L1 2717 2838 -4011 1243 121 0 0 chr11 76111931 76112096 -74671457 + AluSc SINE Alu 133 297 -12 668 155 0 88 chr11 76112096 76112162 -74671391 + L1P4 LINE L1 2829 2899 -3950 2581 78 0 0 chr11 76112162 76112470 -74671083 + AluY SINE Alu 1 308 -3 668 155 0 88 chr11 76112470 76112582 -74670971 + L1P4 LINE L1 2899 2993 -3856 * 2466 165 26 4 chr11 76112568 76113189 -74670364 + L1P4 LINE L1 5510 6142 -727 861 176 14 0 chr11 76113190 76113338 -74670215 + AluJb SINE Alu 153 302 -10 2378 93 0 33 chr11 76113339 76113703 -74669850 + L1P4 LINE L1 6135 6486 -383 1281 131 237 13 chr11 76113704 76113940 -74669613 + AluSg1 SINE Alu 2 290 -19 1703 115 52 73 chr11 76113940 76114227 -74669326 + AluSx SINE Alu 1 281 -31 270 0 0 0 chr11 76114231 76114261 -74669292 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 503 117 0 3 chr11 76114582 76114816 -74668737 + AluSq SINE Alu 1 297 -16 322 225 225 27 chr11 76114911 76115022 -74668531 - L2 LINE L2 -1 3312 3180 1699 120 116 8 chr11 76116733 76117000 -74666553 + AluSg SINE Alu 1 296 -14 946 171 64 0 chr11 76117016 76117203 -74666350 + L1PB4 LINE L1 5787 5985 -171 2586 104 60 100 chr11 76117207 76117288 -74666265 + MER4B LTR ERV1 112 195 -415 1928 139 17 10 chr11 76117288 76117582 -74665971 + AluSx SINE Alu 1 296 -16 2586 104 60 100 chr11 76117582 76117599 -74665954 + MER4B LTR ERV1 195 211 -399 213 39 0 0 chr11 76117599 76117625 -74665928 + (GGAA)n Simple_repeat Simple_repeat 4 29 0 1215 108 72 54 chr11 76117635 76117758 -74665795 + MER30 DNA MER1_type 4 134 -96 2194 100 10 7 chr11 76117758 76118058 -74665495 + AluSg SINE Alu 1 301 -9 1215 108 72 54 chr11 76118058 76118156 -74665397 + MER30 DNA MER1_type 134 229 -1 2586 104 60 100 chr11 76118156 76118221 -74665332 + MER4B LTR ERV1 220 286 -324 1957 78 51 4 chr11 76118221 76118508 -74665045 + AluSp SINE Alu 17 315 0 2586 104 60 100 chr11 76118508 76118850 -74664703 + MER4B LTR ERV1 286 610 0 267 218 161 0 chr11 76119019 76119106 -74664447 - MIR SINE MIR -78 130 30 232 263 119 25 chr11 76119133 76119251 -74664302 - L2 LINE L2 -229 3043 2915 1806 138 48 0 chr11 76119372 76119641 -74663912 + AluJb SINE Alu 1 282 -30 198 0 0 0 chr11 76119905 76119927 -74663626 + (TAAAAA)n Simple_repeat Simple_repeat 1 22 0 1734 161 48 14 chr11 76121453 76121744 -74661809 - AluJb SINE Alu -10 302 2 2343 96 0 7 chr11 76121924 76122227 -74661326 - AluSx SINE Alu -11 301 1 35 0 0 0 chr11 76122310 76122345 -74661208 + AT_rich Low_complexity Low_complexity 1 35 0 1521 241 111 19 chr11 76122373 76122841 -74660712 + MLT1J LTR MaLR 1 511 0 354 268 74 15 chr11 76122841 76123089 -74660464 + MER113 DNA MER1_type? 172 456 -65 607 197 48 14 chr11 76123518 76123665 -74659888 + MIR SINE MIR 67 218 -44 261 0 0 0 chr11 76123921 76123950 -74659603 + (T)n Simple_repeat Simple_repeat 1 29 0 1510 143 95 110 chr11 76124730 76125065 -74658488 + MSTD LTR MaLR 1 331 -65 2120 137 0 13 chr11 76125065 76125372 -74658181 + AluSx SINE Alu 10 312 0 1510 143 95 110 chr11 76125372 76125435 -74658118 + MSTD LTR MaLR 331 393 -3 200 214 18 0 chr11 76125480 76125536 -74658017 + (TGGG)n Simple_repeat Simple_repeat 4 60 0 31 26 0 0 chr11 76125776 76125814 -74657739 + AT_rich Low_complexity Low_complexity 1 38 0 209 197 152 0 chr11 76125874 76125940 -74657613 + L2 LINE L2 3230 3305 -8 210 224 0 140 chr11 76125947 76125982 -74657571 - MIR SINE MIR -120 142 104 2138 113 10 16 chr11 76125982 76126293 -74657260 + AluSx SINE Alu 1 309 -3 210 224 0 140 chr11 76126293 76126364 -74657189 - MIR SINE MIR -158 104 51 2349 107 0 0 chr11 76127133 76127432 -74656121 - AluSx SINE Alu -13 299 1 187 200 50 50 chr11 76127544 76127604 -74655949 + MIR3 SINE MIR 104 163 -45 259 200 0 106 chr11 76127946 76127980 -74655573 + MER20B DNA MER1_type 692 728 -55 1916 161 0 16 chr11 76127980 76128291 -74655262 + AluJb SINE Alu 3 308 -4 259 200 0 106 chr11 76128291 76128341 -74655212 + MER20B DNA MER1_type 728 767 -16 446 125 0 0 chr11 76128341 76128413 -74655140 + L1MB3 LINE L1 5836 5907 -264 1027 243 44 50 chr11 76128415 76128682 -74654871 + MER2 DNA MER2_type 10 276 -69 1059 198 194 0 chr11 76128682 76128835 -74654718 - AluJb SINE Alu 0 302 180 1970 133 4 4 chr11 76128835 76129114 -74654439 + AluSx SINE Alu 21 299 -13 1059 198 194 0 chr11 76129114 76129213 -74654340 - AluJb SINE Alu -122 180 1 1027 243 44 50 chr11 76129213 76129283 -74654270 + MER2 DNA MER2_type 276 345 0 953 188 5 10 chr11 76129283 76129480 -74654073 + L1MB3 LINE L1 5905 6100 -83 2433 109 0 0 chr11 76129513 76129825 -74653728 - AluSx SINE Alu 0 312 1 321 167 13 26 chr11 76129825 76129903 -74653650 + L1MB2 LINE L1 6081 6157 -14 1395 168 6 107 chr11 76130236 76130600 -74652953 - AluJo SINE Alu 0 312 1 1067 161 0 0 chr11 76131099 76131260 -74652293 + AluJb SINE Alu 138 298 -14 285 242 0 16 chr11 76131316 76131378 -74652175 + MLT1G1 LTR MaLR 1 61 -534 382 113 26 16 chr11 76131421 76131498 -74652055 + AluJb SINE Alu 86 146 -156 527 152 0 0 chr11 76131498 76131590 -74651963 + AluSg/x SINE Alu 205 296 -13 238 291 0 0 chr11 76131643 76131698 -74651855 + MLT1H1 LTR MaLR 217 271 -319 * 603 231 0 13 chr11 76131687 76131842 -74651711 + MLT1H1 LTR MaLR 401 555 0 328 294 16 48 chr11 76131847 76131973 -74651580 - MIR SINE MIR -119 143 22 2388 95 0 40 chr11 76132263 76132398 -74651155 + AluSx SINE Alu 1 140 -172 2384 96 7 0 chr11 76132398 76132701 -74650852 + AluSx SINE Alu 1 305 -7 2388 95 0 40 chr11 76132701 76132890 -74650663 + AluSx SINE Alu 140 312 0 186 43 0 0 chr11 76132974 76132997 -74650556 + (C)n Simple_repeat Simple_repeat 1 23 0 2319 113 0 0 chr11 76133110 76133411 -74650142 - AluY SINE Alu -10 301 1 1842 144 12 46 chr11 76133413 76133454 -74650099 - L1PA15-16 LINE L1 -4129 2253 2212 1576 163 57 14 chr11 76133454 76133736 -74649817 - AluJo SINE Alu -18 294 1 1842 144 12 46 chr11 76133736 76134086 -74649467 - L1PA15-16 LINE L1 -4170 2212 1435 2066 115 28 3 chr11 76134096 76134384 -74649169 - AluSx SINE Alu -17 295 1 246 243 68 0 chr11 76134614 76134688 -74648865 - MIR SINE MIR -56 206 128 2410 100 122 5 chr11 76134719 76135120 -74648433 + LTR7 LTR ERV1 1 448 -2 18987 94 15 55 chr11 76135122 76138242 -74645311 + HERVH LTR ERV1 1 2995 -4718 4079 89 38 0 chr11 76138221 76138806 -74644747 + HERVH LTR ERV1 3140 3746 -3967 * 1041 69 0 0 chr11 76138801 76138945 -74644608 + HERVH LTR ERV1 3850 3993 -3720 * 4069 160 3 1 chr11 76138947 76139608 -74643945 + HERVH LTR ERV1 4488 5149 -2564 1319 124 23 9 chr11 76139609 76139826 -74643727 + HERVH LTR ERV1 5600 5819 -1894 * 2251 106 45 13 chr11 76139824 76140201 -74643352 + HERVH LTR ERV1 7322 7710 -3 2645 43 0 0 chr11 76140202 76140503 -74643050 + AluY SINE Alu 1 301 -10 2698 87 92 5 chr11 76140511 76140923 -74642630 + LTR7 LTR ERV1 1 448 -2 24 0 0 0 chr11 76141064 76141088 -74642465 + AT_rich Low_complexity Low_complexity 1 24 0 2235 135 0 0 chr11 76141109 76141420 -74642133 - AluSx SINE Alu -1 311 1 2088 142 0 3 chr11 76141420 76141715 -74641838 - AluSx SINE Alu -18 294 1 2506 65 0 0 chr11 76142821 76143114 -74640439 + AluY SINE Alu 1 293 -18 1526 180 32 44 chr11 76143401 76143574 -74639979 - AluJo SINE Alu 0 312 143 1947 152 7 10 chr11 76143574 76143883 -74639670 - AluSx SINE Alu -4 308 1 1526 180 32 44 chr11 76143883 76144025 -74639528 - AluJo SINE Alu -169 143 1 1934 151 0 26 chr11 76144875 76145179 -74638374 - AluJb SINE Alu -16 296 1 1844 186 93 2 chr11 76145333 76145752 -74637801 + MLT1D LTR MaLR 32 488 -17 182 152 196 0 chr11 76145769 76145815 -74637738 - L2 LINE L2 -1017 2297 2243 2256 111 0 10 chr11 76146457 76146763 -74636790 + AluSx SINE Alu 1 303 -9 215 353 41 16 chr11 76146993 76147115 -74636438 + L2 LINE L2 3134 3258 -14 229 238 48 0 chr11 76147952 76148015 -74635538 + MIR SINE MIR 10 75 -187 522 263 164 23 chr11 76149106 76149504 -74634049 + MLT1D LTR MaLR 5 503 -2 555 292 23 12 chr11 76149738 76149909 -74633644 - MIR SINE MIR -87 175 3 448 317 28 39 chr11 76150510 76150690 -74632863 + MIR SINE MIR 8 185 -77 705 126 42 8 chr11 76151110 76151229 -74632324 - AluSq/x SINE Alu -188 125 3 1974 132 7 45 chr11 76151234 76151544 -74632009 - AluJo SINE Alu -14 298 1 315 49 0 0 chr11 76152290 76152331 -74631222 + (CA)n Simple_repeat Simple_repeat 2 42 0 393 271 0 0 chr11 76152390 76152567 -74630986 + (CA)n Simple_repeat Simple_repeat 1 177 0 510 226 0 20 chr11 76152590 76152894 -74630659 + (CA)n Simple_repeat Simple_repeat 1 297 0 1602 151 138 46 chr11 76152936 76153285 -74630268 + MSTA LTR MaLR 1 391 -37 1846 167 0 26 chr11 76153285 76153596 -74629957 - AluSx SINE Alu -7 305 3 1602 151 138 46 chr11 76153596 76153638 -74629915 + MSTA LTR MaLR 391 428 0 185 295 0 16 chr11 76153695 76153817 -74629736 + (CATA)n Simple_repeat Simple_repeat 2 121 0 222 378 8 8 chr11 76153824 76153951 -74629602 + (CA)n Simple_repeat Simple_repeat 2 128 0 245 224 65 0 chr11 76156623 76156730 -74626823 + LTR16A1 LTR ERVL 217 330 -127 205 290 196 0 chr11 76156794 76156896 -74626657 - MIR SINE MIR -71 137 16 630 39 0 0 chr11 76157242 76157319 -74626234 + (TTCC)n Simple_repeat Simple_repeat 1 77 0 192 40 0 0 chr11 76157319 76157344 -74626209 + (TCC)n Simple_repeat Simple_repeat 2 26 0 2309 112 0 3 chr11 76157347 76157661 -74625892 - AluSq SINE Alu 0 313 1 1553 171 75 7 chr11 76158638 76158930 -74624623 + AluJb SINE Alu 1 312 0 274 176 77 44 chr11 76159643 76159734 -74623819 + MIR SINE MIR 33 127 -81 330 341 15 59 chr11 76159746 76159881 -74623672 - L2 LINE L2 0 3313 3185 1067 264 81 0 chr11 76160173 76160521 -74623032 + MLT1K LTR MaLR 149 524 -64 1907 150 0 0 chr11 76160540 76160833 -74622720 - AluJo SINE Alu -14 298 6 447 244 19 96 chr11 76161431 76161587 -74621966 + MIR SINE MIR 69 212 -50 620 252 15 13 chr11 76161666 76161859 -74621694 + MIR SINE MIR 58 252 -10 837 87 0 114 chr11 76161871 76162020 -74621533 - FLAM_C SINE Alu -1 132 1 258 258 0 0 chr11 76162934 76163023 -74620530 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 2025 126 3 0 chr11 76163092 76163386 -74620167 + AluSq SINE Alu 1 295 -18 1998 149 0 0 chr11 76164801 76165103 -74618450 + AluSx SINE Alu 1 302 -10 298 260 65 41 chr11 76165472 76165595 -74617958 + L2 LINE L2 3144 3269 -3 2245 77 3 10 chr11 76165765 76166063 -74617490 + AluSx SINE Alu 1 296 -16 293 44 67 0 chr11 76166556 76166601 -74616952 + A-rich Low_complexity Low_complexity 4 51 0 2918 125 28 60 chr11 76167580 76167807 -74615746 - MER4B LTR ERV1 -29 581 348 1929 118 42 3 chr11 76167807 76168095 -74615458 - AluSq SINE Alu -14 299 1 2918 125 28 60 chr11 76168095 76168467 -74615086 - MER4B LTR ERV1 -262 348 1 187 287 174 17 chr11 76168480 76168595 -74614958 - MER5A DNA MER1_type 0 189 57 247 309 0 0 chr11 76168968 76169036 -74614517 - Charlie8 DNA MER1_type -1945 472 405 324 70 0 0 chr11 76169221 76169264 -74614289 + (T)n Simple_repeat Simple_repeat 1 43 0 358 274 80 0 chr11 76169518 76169631 -74613922 - L2 LINE L2 -2 3311 3190 817 141 30 0 chr11 76169667 76169802 -74613751 + FLAM_C SINE Alu 4 142 -1 2310 159 42 46 chr11 76170141 76170336 -74613217 - L1MB7 LINE L1 -14 6170 5976 2143 95 29 10 chr11 76170336 76170642 -74612911 - AluSx SINE Alu 0 312 1 2310 159 42 46 chr11 76170642 76170786 -74612767 - L1MB7 LINE L1 -208 5976 5831 1918 148 0 23 chr11 76170786 76171091 -74612462 - AluSx SINE Alu -14 298 1 2310 159 42 46 chr11 76171091 76171229 -74612324 - L1MB7 LINE L1 -353 5831 5694 1696 165 23 32 chr11 76171238 76171547 -74612006 - AluJo SINE Alu -6 306 1 1919 139 0 10 chr11 76171557 76171719 -74611834 - AluSx SINE Alu -20 292 133 2240 176 88 19 chr11 76171719 76172195 -74611358 - LTR22 LTR ERVK 0 509 1 1919 139 0 10 chr11 76172195 76172327 -74611226 - AluSx SINE Alu -179 133 1 932 101 0 0 chr11 76172331 76172460 -74611093 - AluSg/x SINE Alu 0 312 184 192 294 290 20 chr11 76172499 76172744 -74610809 - L2 LINE L2 -681 2633 2323 657 203 198 55 chr11 76172766 76172960 -74610593 + MSTC LTR MaLR 142 367 -61 1788 143 26 16 chr11 76172960 76173268 -74610285 + AluJb SINE Alu 1 311 -1 381 108 0 0 chr11 76173423 76173488 -74610065 + MSTC LTR MaLR 351 415 -13 380 289 104 40 chr11 76173496 76173664 -74609889 - L2 LINE L2 -982 2332 2141 1972 158 0 3 chr11 76173664 76173968 -74609585 + AluJb SINE Alu 3 305 -7 380 289 104 40 chr11 76173968 76174048 -74609505 - L2 LINE L2 -1173 2141 2068 349 321 0 0 chr11 76174052 76174186 -74609367 - L1M4 LINE L1 -1370 4776 4643 31 0 0 0 chr11 76174186 76174217 -74609336 + AT_rich Low_complexity Low_complexity 1 31 0 2369 82 3 0 chr11 76174217 76174522 -74609031 - AluSx SINE Alu -6 306 1 2079 79 0 31 chr11 76174525 76174839 -74608714 - AluY SINE Alu 0 305 1 872 212 174 82 chr11 76175006 76175120 -74608433 + MLT1D LTR MaLR 1 103 -402 1818 100 115 4 chr11 76175120 76175389 -74608164 + AluSx SINE Alu 1 299 -13 872 212 174 82 chr11 76175389 76175723 -74607830 + MLT1D LTR MaLR 103 490 -15 2230 84 0 0 chr11 76175780 76176065 -74607488 + AluSg SINE Alu 1 285 -25 657 25 0 0 chr11 76176065 76176144 -74607409 + (CACAA)n Simple_repeat Simple_repeat 4 82 0 360 276 109 68 chr11 76176234 76176373 -74607180 + L1ME3A LINE L1 5933 6086 -84 1658 144 12 98 chr11 76176373 76176700 -74606853 - AluJb SINE Alu -13 299 1 360 276 109 68 chr11 76176700 76176781 -74606772 + L1ME3A LINE L1 6086 6162 -8 1161 111 9 13 chr11 76177184 76178132 -74605421 + (TCCA)n Simple_repeat Simple_repeat 1 1123 0 1161 77 6 11 chr11 76178132 76178313 -74605240 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 215 170 94 0 chr11 76178492 76178545 -74605008 - L2 LINE L2 0 3272 3215 288 301 218 0 chr11 76179416 76179655 -74603898 + L2 LINE L2 2661 2951 -363 333 68 0 0 chr11 76179968 76180012 -74603541 + (A)n Simple_repeat Simple_repeat 1 44 0 247 309 0 0 chr11 76180197 76180265 -74603288 + Charlie8 DNA MER1_type 405 472 -1945 187 287 174 17 chr11 76180638 76180753 -74602800 + MER5A DNA MER1_type 57 189 0 2918 125 28 60 chr11 76180766 76181138 -74602415 + MER4B LTR ERV1 1 348 -262 1946 117 41 3 chr11 76181138 76181428 -74602125 + AluSq SINE Alu 1 301 -12 2918 125 28 60 chr11 76181428 76181655 -74601898 + MER4B LTR ERV1 348 581 -29 293 44 67 0 chr11 76182634 76182679 -74600874 + T-rich Low_complexity Low_complexity 4 51 0 1081 90 0 19 chr11 76183172 76183327 -74600226 - AluSx SINE Alu -16 296 145 2332 64 0 13 chr11 76183347 76183645 -74599908 + AluY SINE Alu 1 294 -17 1093 69 0 14 chr11 76183676 76183821 -74599732 - AluSx SINE Alu -169 143 1 225 139 23 0 chr11 76183869 76183912 -74599641 + Cheshire DNA MER1_type 851 894 -1526 * 290 268 0 0 chr11 76183909 76183980 -74599573 + Cheshire DNA MER1_type 2350 2420 0 2164 97 14 0 chr11 76184711 76185001 -74598552 - AluSx SINE Alu -18 294 1 491 270 24 0 chr11 76185313 76185439 -74598114 - L3 LINE CR1 -84 1493 1365 1173 145 0 0 chr11 76185439 76185618 -74597935 - AluJb SINE Alu 0 312 134 1542 158 56 11 chr11 76185619 76185904 -74597649 - AluJb SINE Alu -14 298 1 1541 167 60 0 chr11 76186992 76187261 -74596292 - AluJb SINE Alu -22 290 6 258 269 99 1 chr11 76190961 76191068 -74592485 + MIR SINE MIR 8 125 -83 370 330 97 22 chr11 76191125 76191310 -74592243 - MIR SINE MIR -48 214 16 2025 91 0 25 chr11 76191876 76192162 -74591391 - AluSq SINE Alu 0 313 35 191 256 0 0 chr11 76192565 76192608 -74590945 + L2 LINE L2 3229 3271 -1 543 284 14 14 chr11 76192653 76192801 -74590752 - MIR SINE MIR -8 254 107 577 258 148 15 chr11 76192827 76193230 -74590323 - MLT1C LTR MaLR -10 495 7 311 273 99 5 chr11 76193554 76193695 -74589858 + MIR SINE MIR 3 152 -63 263 350 40 0 chr11 76195579 76195679 -74587874 + L2 LINE L2 3208 3311 -2 211 263 116 32 chr11 76196244 76196339 -74587214 + L2 LINE L2 3170 3272 0 1621 130 21 76 chr11 76196476 76196581 -74586972 - MER1B DNA MER1_type -2373 339 230 2125 108 0 0 chr11 76196581 76196891 -74586662 - AluSx SINE Alu 0 310 1 1621 130 21 76 chr11 76196891 76197114 -74586439 - MER1B DNA MER1_type -2482 230 28 201 147 29 0 chr11 76197123 76197157 -74586396 + GA-rich Low_complexity Low_complexity 2 36 0 414 288 68 110 chr11 76197264 76197665 -74585888 + L1MEd LINE L1 612 1027 -5154 461 181 21 0 chr11 76197720 76197814 -74585739 + MER63 DNA MER1_type 31 752 -310 1191 76 0 22 chr11 76198017 76198201 -74585352 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 236 100 25 0 chr11 76198201 76198241 -74585312 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 1966 147 10 0 chr11 76198241 76198548 -74585005 - AluSx SINE Alu -2 310 1 574 261 30 18 chr11 76199412 76199577 -74583976 - MIR SINE MIR -65 197 31 581 169 26 3 chr11 76200127 76200409 -74583144 + GA-rich Low_complexity Low_complexity 1 288 0 228 184 0 0 chr11 76200440 76200489 -74583064 + GA-rich Low_complexity Low_complexity 2 50 0 1218 234 86 10 chr11 76201114 76201511 -74582042 + MLT1C LTR MaLR 6 432 -35 620 148 59 30 chr11 76201917 76202052 -74581501 + MER20 DNA MER1_type 1 139 -80 21 36 0 0 chr11 76202781 76202809 -74580744 + AT_rich Low_complexity Low_complexity 1 28 0 392 301 72 44 chr11 76202877 76203093 -74580460 - MIR SINE MIR 0 262 41 2102 61 54 0 chr11 76203162 76203430 -74580123 + AluY SINE Alu 1 282 -29 433 0 0 0 chr11 76203430 76203478 -74580075 + (CAAA)n Simple_repeat Simple_repeat 2 168 0 264 298 32 0 chr11 76204591 76204685 -74578868 - MIR3 SINE MIR -3 205 109 183 313 78 0 chr11 76206734 76206798 -74576755 - L2 LINE L2 -1 3312 3244 187 306 13 57 chr11 76206905 76207062 -74576491 - L2 LINE L2 -333 2980 2831 470 285 8 9 chr11 76207158 76207306 -74576247 - MIR3 SINE MIR -50 158 12 340 234 9 37 chr11 76209604 76209711 -74573842 - L2 LINE L2 -336 2977 2874 2271 105 0 0 chr11 76209729 76210034 -74573519 - AluY SINE Alu -6 305 1 350 264 40 67 chr11 76211935 76212089 -74571464 + MIR SINE MIR 16 165 -71 2275 101 0 22 chr11 76212090 76212408 -74571145 - AluSx SINE Alu -1 311 1 326 301 16 16 chr11 76213351 76213476 -74570077 - MIR SINE MIR -62 146 29 255 346 50 0 chr11 76213717 76213818 -74569735 - MIR SINE MIR -114 148 43 189 0 0 0 chr11 76214128 76214149 -74569404 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 1633 111 0 0 chr11 76214166 76214383 -74569170 + AluSx SINE Alu 1 217 -95 2274 112 3 0 chr11 76214880 76215192 -74568361 + AluSq SINE Alu 1 313 0 340 323 16 8 chr11 76215426 76215550 -74568003 + MIR3 SINE MIR 39 163 -45 264 130 0 0 chr11 76216624 76216670 -74566883 + (T)n Simple_repeat Simple_repeat 1 46 0 782 344 82 4 chr11 76217674 76218125 -74565428 - L2 LINE L2 0 3313 2828 1976 141 0 3 chr11 76219114 76219413 -74564140 - AluSq SINE Alu -15 298 1 2281 91 0 3 chr11 76219934 76220242 -74563311 - AluSx SINE Alu -5 307 1 1842 150 7 3 chr11 76220245 76220538 -74563015 - AluJo SINE Alu -18 294 1 1193 279 91 25 chr11 76220886 76221324 -74562229 + MLT1C LTR MaLR 1 467 0 2123 119 0 3 chr11 76222319 76222621 -74560932 - AluSx SINE Alu -11 301 1 215 253 169 0 chr11 76224798 76224881 -74558672 - MIR SINE MIR -133 129 33 379 295 224 6 chr11 76225227 76225410 -74558143 - MIR SINE MIR 0 262 40 180 0 0 0 chr11 76225870 76225890 -74557663 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 186 43 0 0 chr11 76225900 76225923 -74557630 + (CCCTG)n Simple_repeat Simple_repeat 3 25 0 248 297 11 33 chr11 76226642 76226733 -74556820 + L2 LINE L2 3183 3271 -1 640 236 46 49 chr11 76226897 76227202 -74556351 + MLT1J LTR MaLR 108 411 -100 33 66 0 0 chr11 76228151 76228212 -74555341 + AT_rich Low_complexity Low_complexity 1 61 0 207 0 0 0 chr11 76228270 76228293 -74555260 + (T)n Simple_repeat Simple_repeat 1 23 0 1951 130 41 0 chr11 76228433 76228725 -74554828 - AluJb SINE Alu -8 304 1 2305 83 3 3 chr11 76229050 76229350 -74554203 - AluSx SINE Alu -12 300 1 2488 65 0 7 chr11 76231667 76231976 -74551577 + AluY SINE Alu 1 307 -4 2011 113 3 3 chr11 76232583 76232898 -74550655 + AluSx SINE Alu 2 316 0 767 183 42 58 chr11 76233252 76233443 -74550110 + MER58A DNA MER1_type 7 194 -30 1643 164 7 7 chr11 76234290 76234594 -74548959 - AluY SINE Alu -7 304 1 636 265 167 5 chr11 76235426 76235641 -74547912 - MIR SINE MIR -12 250 1 21 0 0 0 chr11 76235776 76235797 -74547756 + AT_rich Low_complexity Low_complexity 1 21 0 1119 185 0 10 chr11 76235898 76236103 -74547450 + AluJo SINE Alu 87 289 -23 2263 91 3 0 chr11 76236983 76237280 -74546273 - AluSq SINE Alu -15 298 1 622 285 102 0 chr11 76237326 76237512 -74546041 - MIR SINE MIR -43 219 15 192 346 78 48 chr11 76237668 76237899 -74545654 + L2 LINE L2 3009 3246 -26 501 191 71 32 chr11 76238152 76238278 -74545275 + MIR SINE MIR 23 153 -109 465 254 0 35 chr11 76238302 76238416 -74545137 - MIR SINE MIR -63 199 90 863 314 54 27 chr11 76238646 76239127 -74544426 - LTR33A LTR ERVL 0 523 30 1747 192 30 31 chr11 76239574 76240134 -74543419 + MLT2A2 LTR ERVL 1 554 0 403 327 18 60 chr11 76240288 76240505 -74543048 - MIR SINE MIR -51 211 4 444 160 96 0 chr11 76240582 76240676 -74542877 - MIR SINE MIR -119 143 41 231 88 0 0 chr11 76240676 76240710 -74542843 + (T)n Simple_repeat Simple_repeat 1 34 0 2195 129 0 0 chr11 76240899 76241210 -74542343 - AluSx SINE Alu 0 312 2 254 253 173 43 chr11 76241392 76241554 -74541999 + Charlie8 DNA MER1_type 89 271 -2146 209 280 226 0 chr11 76241965 76242058 -74541495 - MIR SINE MIR -62 146 33 279 377 14 7 chr11 76242373 76242519 -74541034 + MIR SINE MIR 85 231 -31 31 0 0 0 chr11 76242714 76242745 -74540808 + AT_rich Low_complexity Low_complexity 1 31 0 1377 126 41 29 chr11 76242795 76243041 -74540512 + L1MB5 LINE L1 5926 6174 0 220 273 195 39 chr11 76243191 76243319 -74540234 + MER5A DNA MER1_type 7 154 -35 1576 213 58 25 chr11 76243845 76244207 -74539346 + MLT1A2 LTR MaLR 1 374 0 439 302 0 265 chr11 76245746 76245877 -74537676 + MIR SINE MIR 3 87 -175 3323 131 29 22 chr11 76245877 76246303 -74537250 + MER41C LTR ERV1 1 433 -121 2226 121 0 3 chr11 76246303 76246617 -74536936 - AluSq SINE Alu 0 313 1 3323 131 29 22 chr11 76246617 76246740 -74536813 + MER41C LTR ERV1 433 554 0 439 302 0 265 chr11 76246740 76246849 -74536704 + MIR SINE MIR 87 243 -19 1060 172 10 0 chr11 76247038 76247241 -74536312 + L1PA15 LINE L1 5581 5785 -381 2263 97 0 0 chr11 76247241 76247541 -74536012 + AluSq SINE Alu 1 300 -13 1130 99 28 39 chr11 76247541 76247701 -74535852 + AluSq SINE Alu 134 293 -20 2551 115 31 15 chr11 76247701 76248092 -74535461 + L1PA15 LINE L1 5769 6165 0 1130 99 28 39 chr11 76248092 76248112 -74535441 + AluSq SINE Alu 293 312 -1 444 288 179 5 chr11 76248130 76248314 -74535239 + MIR SINE MIR 28 243 -19 993 112 47 18 chr11 76248331 76248500 -74535053 - AluSp SINE Alu -3 310 137 2354 89 0 0 chr11 76248501 76248805 -74534748 - AluSq SINE Alu -9 304 1 216 22 130 0 chr11 76249292 76249338 -74534215 + (CAGG)n Simple_repeat Simple_repeat 1 52 0 205 125 0 0 chr11 76249393 76249425 -74534128 + MIR SINE MIR 117 148 -114 284 319 0 0 chr11 76249640 76249731 -74533822 - L3 LINE CR1 -80 1497 1407 181 368 26 0 chr11 76249856 76249932 -74533621 + L2 LINE L2 3109 3186 -86 257 204 0 9 chr11 76252190 76252244 -74531309 - MIR SINE MIR -62 146 95 199 320 39 0 chr11 76254071 76254149 -74529404 + MIR SINE MIR 68 148 -114 762 239 17 28 chr11 76254933 76255042 -74528511 + MER45A DNA AcHobo 1 110 -1471 2241 78 0 0 chr11 76255042 76255325 -74528228 + AluSx SINE Alu 1 283 -29 294 73 0 0 chr11 76255325 76255366 -74528187 + (CA)n Simple_repeat Simple_repeat 2 42 0 762 239 17 28 chr11 76255366 76255435 -74528118 + MER45A DNA AcHobo 108 178 0 259 202 174 10 chr11 76256177 76256266 -74527287 - MIR SINE MIR -89 119 21 352 340 93 0 chr11 76256309 76256459 -74527094 + MIR3 SINE MIR 34 197 -11 2164 96 10 0 chr11 76256749 76257041 -74526512 + AluSx SINE Alu 1 295 -17 357 284 139 82 chr11 76257186 76257394 -74526159 + MIR SINE MIR 10 229 -33 834 176 6 30 chr11 76258959 76259124 -74524429 - AluJb SINE Alu -18 294 134 2453 65 0 0 chr11 76260801 76261108 -74522445 - AluY SINE Alu -4 307 1 1279 110 0 0 chr11 76261125 76261298 -74522255 - AluSq SINE Alu -1 312 140 2203 85 0 0 chr11 76261303 76261610 -74521943 - AluSx SINE Alu 0 307 1 187 262 0 0 chr11 76262416 76262458 -74521095 - L2 LINE L2 0 3272 3231 483 206 18 0 chr11 76263864 76264034 -74519519 + GA-rich Low_complexity Low_complexity 2 174 0 476 250 47 0 chr11 76264594 76264722 -74518831 - L2 LINE L2 0 3313 3180 1797 103 26 4 chr11 76264847 76265120 -74518433 + L1MA2 LINE L1 6026 6304 0 546 306 99 9 chr11 76265342 76265665 -74517888 - LTR16C LTR ERVL 0 491 140 200 357 51 0 chr11 76267081 76267179 -74516374 - MIR SINE MIR -55 153 51 298 271 12 24 chr11 76267252 76267337 -74516216 - MIR SINE MIR -62 200 117 235 333 48 0 chr11 76267635 76267740 -74515813 + MIR SINE MIR 37 146 -116 648 303 28 23 chr11 76268850 76269068 -74514485 + MIR SINE MIR 44 262 0 276 333 0 13 chr11 76269247 76269325 -74514228 + MIR SINE MIR 51 127 -81 1921 161 0 3 chr11 76269672 76269977 -74513576 - AluSx SINE Alu -8 304 1 208 139 0 0 chr11 76270021 76270057 -74513496 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 301 292 8 42 chr11 76270170 76270290 -74513263 + MIR SINE MIR 117 232 -30 410 249 102 46 chr11 76271940 76272112 -74511441 + MIR SINE MIR 48 229 -33 197 312 52 0 chr11 76272152 76272229 -74511324 + L2 LINE L2 3198 3278 -35 215 291 139 0 chr11 76273733 76273819 -74509734 - MIR SINE MIR -62 200 103 184 341 24 12 chr11 76274086 76274168 -74509385 + L2 LINE L2 2977 3059 -213 184 229 0 0 chr11 76274288 76274323 -74509230 + L2 LINE L2 3231 3265 -7 228 256 18 80 chr11 76274441 76274572 -74508981 + MIR SINE MIR 36 160 -84 898 57 0 0 chr11 76276025 76276130 -74507423 - U6 snRNA snRNA -2 105 1 205 283 255 9 chr11 76276430 76276536 -74507017 + MIR SINE MIR 56 187 -75 796 227 5 56 chr11 76276626 76276842 -74506711 - MER20 DNA MER1_type -14 205 1 257 294 105 9 chr11 76276900 76277008 -74506545 - MIR SINE MIR -62 146 34 237 163 59 33 chr11 76277139 76277292 -74506261 + (TGGA)n Simple_repeat Simple_repeat 4 160 0 216 97 0 0 chr11 76277937 76277968 -74505585 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 191 402 77 0 chr11 76277990 76278107 -74505446 - L2 LINE L2 -43 3270 3145 192 182 0 0 chr11 76278534 76278578 -74504975 + CT-rich Low_complexity Low_complexity 1 44 0 516 176 6 39 chr11 76278597 76278779 -74504774 + (TCTCTG)n Simple_repeat Simple_repeat 5 180 0 573 156 17 22 chr11 76278814 76278994 -74504559 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 384 167 38 8 chr11 76279012 76279144 -74504409 + (TCTCTG)n Simple_repeat Simple_repeat 3 138 0 525 141 0 0 chr11 76279254 76279332 -74504221 - AluS SINE Alu -234 78 1 204 139 0 28 chr11 76280149 76280185 -74503368 + (TCC)n Simple_repeat Simple_repeat 1 35 0 225 234 21 0 chr11 76280263 76280310 -74503243 - L2 LINE L2 0 3313 3266 482 92 67 17 chr11 76280451 76280571 -74502982 + (TGGA)n Simple_repeat Simple_repeat 1 126 0 1987 119 29 7 chr11 76331903 76332181 -74451372 - AluSq SINE Alu -29 284 1 1709 261 113 45 chr11 76332182 76333418 -74450135 - L1M4 LINE L1 -1574 4572 3250 267 119 0 0 chr11 76333421 76333463 -74450090 + MER115 DNA AcHobo 1 42 -651 664 163 15 0 chr11 76333768 76333903 -74449650 - L1MA8 LINE L1 0 6291 6155 2075 203 10 25 chr11 76333903 76334376 -74449177 - L1M4 LINE L1 -1778 4368 3901 662 335 49 42 chr11 76334389 76334945 -74448608 - L1M4 LINE L1 -2391 3755 3206 441 294 14 0 chr11 76334946 76335089 -74448464 + LTR16B LTR ERVL 230 374 -90 234 256 26 0 chr11 76335983 76336061 -74447492 + (CA)n Simple_repeat Simple_repeat 2 81 0 1801 259 104 27 chr11 76338103 76339659 -74443894 + L1MEc LINE L1 1676 3317 -2898 950 203 100 8 chr11 76339678 76339919 -74443634 - MER115 DNA AcHobo -43 650 388 785 180 0 16 chr11 76340182 76340365 -74443188 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 345 334 128 0 chr11 76341187 76341561 -74441992 - L2 LINE L2 -801 2513 2092 227 178 22 0 chr11 76342030 76342075 -74441478 + MIR SINE MIR 2 47 -215 698 235 95 46 chr11 76342078 76342462 -74441091 - MLT1C LTR MaLR -12 378 1 643 278 86 48 chr11 76343727 76344228 -74439325 + L2 LINE L2 2695 3202 -70 285 273 13 0 chr11 76344246 76344323 -74439230 + (TGAA)n Simple_repeat Simple_repeat 1 78 0 762 189 0 0 chr11 76344324 76344499 -74439054 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 750 173 0 0 chr11 76344544 76344706 -74438847 + (TGGA)n Simple_repeat Simple_repeat 3 164 0 376 234 84 39 chr11 76345282 76345532 -74438021 + L2 LINE L2 2791 3049 -223 374 282 256 10 chr11 76345628 76345940 -74437613 - L2 LINE L2 -44 3269 2881 1644 182 71 42 chr11 76346079 76346257 -74437296 + MSTB1 LTR MaLR 14 185 -247 3390 89 6 46 chr11 76346257 76346442 -74437111 + L1PB1 LINE L1 5632 5823 -328 372 43 0 0 chr11 76346442 76346488 -74437065 + (CA)n Simple_repeat Simple_repeat 2 47 0 3390 89 6 46 chr11 76346488 76346842 -74436711 + L1PB1 LINE L1 5823 6149 -2 1644 182 71 42 chr11 76346842 76347070 -74436483 + MSTB1 LTR MaLR 185 432 0 2608 208 36 22 chr11 76347938 76349041 -74434512 + L1MB2 LINE L1 4704 5825 -346 2255 58 0 15 chr11 76349044 76349318 -74434235 + AluY SINE Alu 1 270 -41 1158 162 67 0 chr11 76349426 76349636 -74433917 + Tigger3(Golem) DNA MER2_type 2805 3028 -1 521 276 151 40 chr11 76349838 76350252 -74433301 + L1MC/D LINE L1 5009 5469 -818 746 97 0 9 chr11 76350524 76350638 -74432915 + (TGGA)n Simple_repeat Simple_repeat 1 113 0 237 341 52 22 chr11 76351298 76351433 -74432120 - MIR SINE MIR -1 261 123 2316 101 0 0 chr11 76351787 76352085 -74431468 + AluSx SINE Alu 1 298 -14 417 271 21 36 chr11 76352154 76352294 -74431259 - MIR SINE MIR -45 217 80 1959 138 0 0 chr11 76353493 76353926 -74429627 - AluSx SINE Alu 0 433 1 594 245 69 0 chr11 76353928 76354116 -74429437 - L1MB1 LINE L1 -39 6129 5929 350 330 53 21 chr11 76354309 76354497 -74429056 - L2 LINE L2 -3 3269 3076 321 318 83 3 chr11 76354634 76354772 -74428781 + MIR SINE MIR 42 191 -61 226 222 12 12 chr11 76355026 76355107 -74428446 + CT-rich Low_complexity Low_complexity 2 82 0 204 269 0 39 chr11 76355398 76355476 -74428077 + C-rich Low_complexity Low_complexity 2 76 0 204 176 14 68 chr11 76355590 76355664 -74427889 + L2 LINE L2 2866 2935 -337 324 376 58 10 chr11 76355753 76355958 -74427595 + L2 LINE L2 3094 3308 -5 1074 240 15 39 chr11 76356360 76356698 -74426855 + L1MA7 LINE L1 5916 6245 -46 1701 187 0 3 chr11 76356708 76357007 -74426546 + AluSx SINE Alu 10 307 -5 695 207 62 48 chr11 76357127 76357335 -74426218 + MLT1D LTR MaLR 8 218 -287 633 223 25 0 chr11 76357407 76357564 -74425989 + MLT1D LTR MaLR 345 505 0 850 239 65 32 chr11 76357995 76358304 -74425249 + MLT1C LTR MaLR 142 460 -7 2105 126 3 0 chr11 76358863 76359156 -74424397 + AluSq SINE Alu 1 294 -19 228 289 222 0 chr11 76360296 76360386 -74423167 - L2 LINE L2 -5 3308 3199 939 162 25 40 chr11 76360423 76360621 -74422932 + MER47A DNA MER2_type 1 195 -171 372 246 30 72 chr11 76361255 76361422 -74422131 + MIR SINE MIR 2 161 -101 258 310 14 0 chr11 76361399 76361470 -74422083 + MIR SINE MIR 28 99 -163 * 298 317 0 0 chr11 76361503 76361585 -74421968 + MIR SINE MIR 176 257 -5 628 254 128 6 chr11 76361612 76361957 -74421596 - MLT1J2 LTR MaLR -23 427 21 23 33 0 0 chr11 76362278 76362308 -74421245 + AT_rich Low_complexity Low_complexity 1 30 0 1914 155 0 10 chr11 76362312 76362608 -74420945 + AluJb SINE Alu 1 293 -19 313 287 6 83 chr11 76362871 76363028 -74420525 + MER5A DNA MER1_type 19 163 -26 241 302 135 8 chr11 76363253 76363379 -74420174 - MIR SINE MIR -119 143 2 1158 197 12 20 chr11 76363535 76363779 -74419774 - L1MB5 LINE L1 0 6174 5933 2236 110 0 10 chr11 76363780 76364090 -74419463 - AluSg SINE Alu -3 307 1 1347 120 0 5 chr11 76364090 76364282 -74419271 - AluSg/x SINE Alu -11 301 111 380 226 49 0 chr11 76364283 76364385 -74419168 - L1MB5 LINE L1 -268 5916 5810 230 298 37 69 chr11 76366056 76366244 -74417309 + L2 LINE L2 2576 2757 -557 195 284 137 20 chr11 76366329 76366431 -74417122 + L2 LINE L2 2919 3032 -240 1493 221 18 30 chr11 76366643 76366973 -74416580 + MLT2C1 LTR ERVL 8 334 -63 201 39 0 0 chr11 76366973 76366999 -74416554 + (TC)n Simple_repeat Simple_repeat 1 26 0 1493 221 18 30 chr11 76366999 76367061 -74416492 + MLT2C1 LTR ERVL 334 395 -2 213 276 53 13 chr11 76367219 76367295 -74416258 - L2 LINE L2 -49 3223 3145 180 184 0 61 chr11 76367371 76367420 -74416133 + L2 LINE L2 3262 3307 -6 2458 70 0 0 chr11 76367811 76368110 -74415443 + AluSp SINE Alu 1 299 -14 3031 228 36 35 chr11 76368153 76369189 -74414364 - L1ME1 LINE L1 -5 6161 5127 2168 175 28 10 chr11 76369189 76369578 -74413975 - MSTD LTR MaLR 0 396 1 3031 228 36 35 chr11 76369578 76370275 -74413278 - L1ME1 LINE L1 -1039 5127 2771 327 25 0 0 chr11 76370529 76370569 -74412984 + (CA)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chr11 76370646 76370680 -74412873 + (TA)n Simple_repeat Simple_repeat 2 35 0 2082 120 3 29 chr11 76370680 76370996 -74412557 - AluSx SINE Alu -4 308 1 543 258 60 6 chr11 76371070 76371252 -74412301 - L1MD3 LINE L1 0 7995 7804 426 275 17 0 chr11 76371542 76371662 -74411891 + MER33 DNA MER1_type 9 130 -194 1950 158 3 3 chr11 76371662 76371973 -74411580 + AluSx SINE Alu 1 311 -1 734 216 6 0 chr11 76371973 76372149 -74411404 + GA-rich Low_complexity Low_complexity 1 177 0 186 43 0 0 chr11 76372259 76372282 -74411271 + (CAT)n Simple_repeat Simple_repeat 1 23 0 891 183 0 0 chr11 76372307 76372487 -74411066 + (CAT)n Simple_repeat Simple_repeat 1 180 0 744 216 0 0 chr11 76372505 76372742 -74410811 + (CAT)n Simple_repeat Simple_repeat 1 237 0 609 292 55 14 chr11 76372758 76372977 -74410576 - MIR SINE MIR -21 241 14 331 344 0 24 chr11 76373426 76373551 -74410002 + MIR SINE MIR 110 231 -31 724 335 75 9 chr11 76373660 76374087 -74409466 + MLT1K LTR MaLR 23 477 -111 312 299 73 7 chr11 76374584 76374721 -74408832 - MER103 DNA DNA -1 165 20 193 179 26 0 chr11 76374723 76374762 -74408791 + L2 LINE L2 3157 3196 -76 1834 204 45 34 chr11 76374882 76375376 -74408177 - MLT1D LTR MaLR -6 499 1 2133 109 0 23 chr11 76375462 76375766 -74407787 - AluSx SINE Alu -15 297 1 426 314 41 35 chr11 76375766 76375938 -74407615 - L2 LINE L2 -5 3308 3136 194 322 22 33 chr11 76376926 76377016 -74406537 + MIR SINE MIR 16 104 -158 212 86 29 0 chr11 76377389 76377424 -74406129 + (GA)n Simple_repeat Simple_repeat 2 37 0 684 213 13 58 chr11 76377424 76377649 -74405904 + MLT1D LTR MaLR 181 395 -110 2145 119 3 3 chr11 76377658 76377968 -74405585 - AluSg SINE Alu 0 310 1 808 138 0 0 chr11 76377968 76378084 -74405469 - AluSq/x SINE Alu -196 116 1 357 265 0 10 chr11 76378094 76378192 -74405361 + MLT1D LTR MaLR 409 505 0 181 279 81 35 chr11 76379915 76380001 -74403552 + MIR SINE MIR 103 192 -70 182 343 14 0 chr11 76380555 76380628 -74402925 - MER5B DNA MER1_type -37 141 68 259 163 0 0 chr11 76381995 76382038 -74401515 - L2 LINE L2 -6 3266 3224 1008 243 46 66 chr11 76384285 76384651 -74398902 - MLT1B LTR MaLR -28 362 4 1097 325 43 22 chr11 76384653 76385280 -74398273 - L1ME3A LINE L1 -61 6109 5470 326 164 30 0 chr11 76385296 76385363 -74398190 - Alu SINE Alu 0 302 234 270 313 102 7 chr11 76385368 76385515 -74398038 - L2 LINE L2 -610 2704 2544 2236 123 0 0 chr11 76386475 76386784 -74396769 - AluSg SINE Alu -1 309 1 435 301 71 53 chr11 76387316 76387582 -74395971 + L2 LINE L2 3042 3312 -1 277 77 0 0 chr11 76387840 76387879 -74395674 + AluJ/FLAM SINE Alu 61 99 -203 512 129 0 11 chr11 76387881 76387974 -74395579 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 1709 168 30 16 chr11 76387974 76388278 -74395275 - AluJo SINE Alu -4 308 1 412 171 37 0 chr11 76388459 76388531 -74395022 - MER45A DNA AcHobo -1403 178 101 1852 168 0 7 chr11 76388531 76388835 -74394718 + AluJo SINE Alu 1 302 -10 373 354 73 12 chr11 76388844 76389186 -74394367 + MLT1I LTR MaLR 46 408 -1 382 268 49 118 chr11 76389300 76389546 -74394007 - L2 LINE L2 -16 3256 3028 192 77 0 0 chr11 76389549 76389575 -74393978 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chr11 76389702 76389722 -74393831 + (CA)n Simple_repeat Simple_repeat 1 20 0 233 196 18 0 chr11 76389757 76389813 -74393740 + (CA)n Simple_repeat Simple_repeat 2 58 0 571 226 107 18 chr11 76390004 76390172 -74393381 - MER63A DNA MER1_type -27 183 1 201 176 0 0 chr11 76391464 76391498 -74392055 + A-rich Low_complexity Low_complexity 1 34 0 187 299 34 60 chr11 76391502 76391619 -74391934 - L2 LINE L2 -248 3065 2952 1377 148 126 11 chr11 76392173 76392444 -74391109 - AluSg1 SINE Alu -7 302 1 220 323 0 0 chr11 76392777 76392842 -74390711 + GA-rich Low_complexity Low_complexity 2 66 0 311 252 159 9 chr11 76392950 76393057 -74390496 - L2 LINE L2 0 3313 3191 557 238 42 36 chr11 76393081 76393249 -74390304 - MIR3 SINE MIR 0 208 40 739 248 29 41 chr11 76393252 76393674 -74389879 + MLT1J LTR MaLR 1 454 -57 251 203 29 43 chr11 76393754 76393823 -74389730 - MIR SINE MIR -59 149 82 2282 104 3 0 chr11 76394407 76394716 -74388837 - AluSg SINE Alu 0 310 1 212 261 15 31 chr11 76394961 76395026 -74388527 - MIR SINE MIR -113 149 86 315 292 49 49 chr11 76396465 76396609 -74386944 - MIR3 SINE MIR -61 147 4 * 322 298 38 23 chr11 76396609 76396732 -74386821 + MIR SINE MIR 37 161 -101 528 333 14 28 chr11 76396724 76396940 -74386613 - MIR SINE MIR -21 241 29 914 193 42 28 chr11 76397240 76397453 -74386100 + MER20 DNA MER1_type 3 218 -1 397 204 39 0 chr11 76398062 76398165 -74385388 + MIR SINE MIR 59 165 -97 225 316 0 0 chr11 76398445 76398502 -74385051 - MIR SINE MIR -62 146 90 180 279 29 29 chr11 76398567 76398635 -74384918 + MIR SINE MIR 73 140 -122 859 251 117 38 chr11 76398701 76399128 -74384425 - MLT1C LTR MaLR -1 466 6 349 274 120 8 chr11 76399464 76399581 -74383972 + MIR SINE MIR 97 226 -36 697 272 98 111 chr11 76399606 76399845 -74383708 + L2 LINE L2 2469 2710 -603 1678 164 3 14 chr11 76399845 76400138 -74383415 + AluJb SINE Alu 6 295 -17 697 272 98 111 chr11 76400138 76400560 -74382993 + L2 LINE L2 2710 3158 -155 338 82 0 0 chr11 76400560 76400609 -74382944 - MADE1 DNA Mariner 0 80 32 697 272 98 111 chr11 76400609 76400763 -74382790 + L2 LINE L2 3158 3313 0 451 278 40 0 chr11 76400791 76400917 -74382636 - MIR SINE MIR -60 148 18 189 0 0 0 chr11 76401126 76401147 -74382406 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 242 236 0 0 chr11 76401267 76401322 -74382231 - MIR SINE MIR -97 165 111 273 280 49 28 chr11 76402160 76402303 -74381250 - MLT1K LTR MaLR -191 397 252 307 219 187 0 chr11 76403427 76403537 -74380016 - MIR SINE MIR -62 146 42 2183 80 3 14 chr11 76403570 76403909 -74379644 - AluY SINE Alu 0 336 1 1964 154 7 3 chr11 76404420 76404719 -74378834 - AluSx SINE Alu -12 300 1 318 374 137 4 chr11 76405062 76405332 -74378221 - L1MC4a LINE L1 -1951 5857 5552 1913 144 3 14 chr11 76405467 76405924 -74377629 + AluSx SINE Alu 1 454 0 186 43 0 0 chr11 76406244 76406267 -74377286 + (TCCC)n Simple_repeat Simple_repeat 1 23 0 1936 169 0 3 chr11 76406267 76406568 -74376985 - AluSx SINE Alu -12 300 1 300 189 14 0 chr11 76407086 76407160 -74376393 - Charlie5 DNA MER1_type -17 2595 2521 423 162 0 51 chr11 76407377 76407494 -74376059 + GA-rich Low_complexity Low_complexity 2 112 0 302 159 14 0 chr11 76407503 76407572 -74375981 + (TGGA)n Simple_repeat Simple_repeat 4 73 0 751 178 12 0 chr11 76407583 76407752 -74375801 + (TGGA)n Simple_repeat Simple_repeat 1 171 0 509 203 8 78 chr11 76408343 76408471 -74375082 - MLT1A2 LTR MaLR -41 324 215 1079 111 17 17 chr11 76408474 76408654 -74374899 + THE1C LTR MaLR 1 180 -195 900 121 58 35 chr11 76408842 76409016 -74374537 + THE1C LTR MaLR 187 364 0 494 154 34 11 chr11 76409051 76409226 -74374327 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 837 138 72 7 chr11 76409251 76409403 -74374150 - MLT1A2 LTR MaLR -212 162 1 30 69 0 0 chr11 76409421 76409479 -74374074 + AT_rich Low_complexity Low_complexity 1 58 0 330 292 58 75 chr11 76409482 76409722 -74373831 + L1MC5 LINE L1 7606 7841 -120 345 350 32 0 chr11 76409837 76409960 -74373593 + MER91B DNA MER1_type 45 171 -19 242 330 21 10 chr11 76410390 76410487 -74373066 - MER5B DNA MER1_type -72 106 9 275 206 37 81 chr11 76411068 76411204 -74372349 - LTR33 LTR ERVL -29 492 363 366 239 111 33 chr11 76411295 76411475 -74372078 - LTR33 LTR ERVL -298 223 30 233 247 14 27 chr11 76413081 76413154 -74370399 + GA-rich Low_complexity Low_complexity 1 72 0 232 313 0 0 chr11 76414411 76414478 -74369075 + MIR SINE MIR 98 164 -98 468 164 41 12 chr11 76415082 76415253 -74368300 + (CAGAGA)n Simple_repeat Simple_repeat 4 179 0 257 211 54 122 chr11 76416015 76416085 -74367468 + L1MB7 LINE L1 4591 4647 -1499 2482 100 0 0 chr11 76416085 76416395 -74367158 - AluSx SINE Alu -2 310 1 257 211 54 122 chr11 76416395 76416471 -74367082 + L1MB7 LINE L1 4647 4727 -1419 513 235 73 0 chr11 76416641 76416777 -74366776 + L1MB7 LINE L1 4737 4882 -1264 3728 195 59 46 chr11 76417283 76417429 -74366124 + L1MB7 LINE L1 4883 5026 -1158 2137 110 47 7 chr11 76417429 76417906 -74365647 + AluSx SINE Alu 1 312 0 3728 195 59 46 chr11 76417906 76419034 -74364519 + L1MB7 LINE L1 5026 6170 -14 189 0 0 0 chr11 76419069 76419090 -74364463 + (TA)n Simple_repeat Simple_repeat 1 21 0 378 226 51 29 chr11 76419278 76419415 -74364138 - MLT1I LTR MaLR -14 395 256 2299 116 7 0 chr11 76419600 76419903 -74363650 - AluSx SINE Alu -7 305 1 319 293 66 71 chr11 76420318 76420478 -74363075 - L1ME LINE L1 -697 5473 5313 2589 69 0 0 chr11 76420478 76420781 -74362772 - AluSg SINE Alu -7 303 1 319 293 66 71 chr11 76420781 76420818 -74362735 - L1ME LINE L1 -857 5313 5277 186 128 103 0 chr11 76421157 76421196 -74362357 - L2 LINE L2 -5 3267 3225 249 226 95 12 chr11 76422470 76422554 -74360999 - L1MC/D LINE L1 -2019 5789 5699 4203 87 0 0 chr11 76422788 76423374 -74360179 - L1PB1 LINE L1 0 6151 5566 494 202 44 2 chr11 76423505 76423684 -74359869 - MER20 DNA MER1_type -2 217 1 241 323 39 39 chr11 76424586 76424741 -74358812 + L2 LINE L2 3159 3313 0 1248 239 71 109 chr11 76426720 76426807 -74356746 + L1ME3A LINE L1 4487 4576 -1594 1489 215 26 7 chr11 76426807 76427114 -74356439 + AluSq SINE Alu 1 313 0 1248 239 71 109 chr11 76427114 76428406 -74355147 + L1ME3A LINE L1 4576 5882 -288 596 252 114 0 chr11 76428420 76428630 -74354923 + L1ME3A LINE L1 5929 6162 -8 547 179 42 9 chr11 76428793 76428925 -74354628 - MIR SINE MIR -62 146 21 2208 97 7 0 chr11 76429635 76429967 -74353586 + AluSx SINE Alu 1 334 0 254 279 13 13 chr11 76430071 76430150 -74353403 + L2 LINE L2 3193 3271 -1 637 277 58 5 chr11 76430152 76430361 -74353192 - MIR SINE MIR -6 256 38 220 324 0 0 chr11 76430932 76431006 -74352547 + G-rich Low_complexity Low_complexity 1 74 0 291 163 11 22 chr11 76431007 76431099 -74352454 + GA-rich Low_complexity Low_complexity 2 92 0 846 171 11 118 chr11 76432293 76432543 -74351010 - L1MC3 LINE L1 -7 7778 7561 2272 119 3 22 chr11 76432543 76432862 -74350691 - AluSq SINE Alu 0 313 1 846 171 11 118 chr11 76432862 76432898 -74350655 - L1MC3 LINE L1 -224 7561 7523 624 269 25 5 chr11 76432892 76433089 -74350464 - L1MC4 LINE L1 -1024 7018 6818 * 782 265 48 82 chr11 76434405 76434930 -74348623 - L1MC4 LINE L1 0 8042 7536 428 214 65 19 chr11 76434917 76435239 -74348314 - L1MC4a LINE L1 -561 7247 6933 * 4974 251 69 64 chr11 76435246 76437525 -74346028 - L1MEc LINE L1 -4060 2336 45 684 232 82 10 chr11 76437548 76437742 -74345811 - L1MC4a LINE L1 -944 6864 6657 403 272 0 18 chr11 76437920 76438034 -74345519 - L2 LINE L2 -5 3308 3197 209 350 21 42 chr11 76438698 76438841 -74344712 - L3 LINE CR1 -180 1397 1258 1475 146 9 0 chr11 76438962 76439188 -74344365 - AluSg/x SINE Alu -12 300 73 788 247 5 0 chr11 76439189 76439375 -74344178 - LTR10C-int LTR ERV1 -5009 1640 1454 1735 297 45 61 chr11 76439527 76440456 -74343097 - LTR10C-int LTR ERV1 -6215 1570 657 573 297 46 39 chr11 76440753 76441012 -74342541 - LTR10C-int LTR ERV1 -7523 262 2 1313 251 56 28 chr11 76441012 76441407 -74342146 - LTR10C LTR ERV1 0 591 186 414 162 0 0 chr11 76441506 76441574 -74341979 - AluJ/FLAM SINE Alu -243 69 2 488 279 84 11 chr11 76441646 76441836 -74341717 + MIR SINE MIR 44 247 -15 2492 78 0 0 chr11 76442673 76442992 -74340561 + AluY SINE Alu 1 311 0 953 270 83 33 chr11 76443098 76443537 -74340016 + MLT1C LTR MaLR 5 467 0 3878 57 26 0 chr11 76443538 76444043 -74339510 + L1PA8 LINE L1 5638 6155 -17 353 203 0 0 chr11 76445370 76445439 -74338114 - MER58 DNA MER1_type -1 2419 2351 490 333 0 6 chr11 76446888 76447053 -74336500 + MIR SINE MIR 93 256 -6 2010 124 35 0 chr11 76447248 76447538 -74336015 + AluSq SINE Alu 1 300 -13 189 0 0 0 chr11 76449270 76449291 -74334262 + (T)n Simple_repeat Simple_repeat 1 21 0 521 188 0 27 chr11 76449325 76449474 -74334079 + CT-rich Low_complexity Low_complexity 2 146 0 1775 165 7 3 chr11 76449474 76449765 -74333788 - AluJo SINE Alu -20 292 1 230 274 71 0 chr11 76450536 76450620 -74332933 + MIR SINE MIR 94 183 -79 472 228 49 41 chr11 76450767 76450890 -74332663 + MLT1J LTR MaLR 186 309 -202 2288 107 3 0 chr11 76450996 76451294 -74332259 - AluSx SINE Alu -13 299 1 276 342 102 29 chr11 76451665 76451940 -74331613 - L3 LINE CR1 -7 1570 1276 249 299 103 8 chr11 76451931 76452048 -74331505 - L2 LINE L2 0 3272 3145 * 417 250 27 9 chr11 76452194 76452306 -74331247 - MER81 DNA DNA 0 114 1 1239 252 103 33 chr11 76452320 76452745 -74330808 - MLT1C LTR MaLR 0 467 13 390 276 103 24 chr11 76452785 76453075 -74330478 - L2 LINE L2 -263 3009 2681 370 337 71 6 chr11 76453361 76453530 -74330023 + MIR SINE MIR 17 196 -66 188 380 0 0 chr11 76453634 76453713 -74329840 + MIR3 SINE MIR 85 163 -45 243 279 21 86 chr11 76453794 76453925 -74329628 - MIR SINE MIR -47 161 41 222 333 69 14 chr11 76454564 76454708 -74328845 + MIR3 SINE MIR 8 159 -49 433 305 39 46 chr11 76454785 76455004 -74328549 - MIR3 SINE MIR -6 256 6 2116 198 8 60 chr11 76455115 76455601 -74327952 + L1MB5 LINE L1 5543 6003 -171 184 278 69 0 chr11 76455810 76455882 -74327671 + MIR SINE MIR 20 96 -166 314 273 0 23 chr11 76455970 76456072 -74327481 + MIR SINE MIR 109 206 -56 2041 89 41 0 chr11 76456793 76457185 -74326368 - AluSx SINE Alu 0 403 1 1377 241 108 18 chr11 76457560 76457996 -74325557 + MER45B DNA AcHobo 1 475 -565 1288 221 48 51 chr11 76458043 76458121 -74325432 + MER45B DNA AcHobo 633 710 -871 1917 144 3 10 chr11 76458121 76458426 -74325127 + AluSx SINE Alu 1 303 -9 2253 84 7 0 chr11 76458428 76458726 -74324827 + AluSp SINE Alu 1 300 -13 1288 221 48 51 chr11 76458726 76459019 -74324534 + MER45B DNA AcHobo 711 1006 -34 320 324 159 14 chr11 76459696 76459986 -74323567 + LTR33 LTR ERVL 3 334 -187 301 296 0 23 chr11 76460249 76460337 -74323216 - MIR SINE MIR -70 192 107 322 321 60 18 chr11 76461469 76461637 -74321916 + MIR SINE MIR 88 262 0 223 319 124 0 chr11 76462230 76462343 -74321210 - MIR SINE MIR -61 147 21 538 266 131 10 chr11 76462982 76463181 -74320372 - MIR SINE MIR -21 241 19 429 343 11 0 chr11 76464160 76464335 -74319218 + (TG)n Simple_repeat Simple_repeat 2 178 0 336 323 5 38 chr11 76464290 76464476 -74319077 + (TATG)n Simple_repeat Simple_repeat 1 180 0 * 385 343 12 0 chr11 76464440 76464606 -74318947 + (TG)n Simple_repeat Simple_repeat 1 168 0 225 282 82 27 chr11 76464785 76464895 -74318658 + L2 LINE L2 3126 3241 -31 530 271 28 0 chr11 76464963 76465107 -74318446 - MIR SINE MIR -68 194 47 199 146 24 0 chr11 76465250 76465291 -74318262 + L2 LINE L2 3018 3059 -213 2324 54 7 3 chr11 76465653 76465950 -74317603 - AluYa5 SINE Alu -8 303 6 258 81 0 48 chr11 76466279 76466341 -74317212 + (TTAA)n Simple_repeat Simple_repeat 4 62 0 191 237 0 0 chr11 76466528 76466566 -74316987 + MIR SINE MIR 111 148 -60 468 256 65 0 chr11 76466995 76467163 -74316390 + (CCCTG)n Simple_repeat Simple_repeat 2 180 0 849 266 65 60 chr11 76469458 76469861 -74313692 + MLT1C LTR MaLR 46 450 -17 183 343 49 10 chr11 76469927 76470029 -74313524 + MIR SINE MIR 83 188 -74 237 326 43 0 chr11 76470329 76470421 -74313132 + L2 LINE L2 3195 3290 -23 192 325 24 12 chr11 76471888 76471971 -74311582 - L2 LINE L2 0 3272 3189 1938 112 7 49 chr11 76472398 76472703 -74310850 - AluSg SINE Alu -18 292 1 411 83 139 0 chr11 76472703 76472775 -74310778 - MER7A DNA MER2_type -213 133 54 333 172 31 47 chr11 76472824 76472888 -74310665 - MER7A DNA MER2_type -285 63 1 1046 149 0 0 chr11 76472912 76473073 -74310480 + AluSq SINE Alu 141 301 -12 225 0 0 0 chr11 76473073 76473098 -74310455 + (CA)n Simple_repeat Simple_repeat 2 26 0 259 232 84 42 chr11 76473098 76473193 -74310360 - L1ME3A LINE L1 -9 6161 6063 729 309 56 21 chr11 76473202 76473539 -74310014 - L1ME3A LINE L1 -171 5999 5651 428 295 79 0 chr11 76473810 76473949 -74309604 - L1ME3A LINE L1 -532 5638 5489 1394 290 55 20 chr11 76473952 76474501 -74309052 - L1ME3A LINE L1 -265 5905 5338 423 276 49 0 chr11 76475132 76475255 -74308298 - L2 LINE L2 -2 3311 3183 280 286 12 0 chr11 76475302 76475404 -74308149 + L1ME2 LINE L1 5526 5628 -536 2439 137 20 0 chr11 76475407 76475800 -74307753 + MSTA LTR MaLR 1 401 -27 518 112 41 61 chr11 76475805 76475903 -74307650 - AluY SINE Alu -1 310 215 2031 128 3 0 chr11 76475908 76476205 -74307348 - AluSq SINE Alu -15 298 1 239 128 0 0 chr11 76476205 76476244 -74307309 + MSTA LTR MaLR 390 428 0 387 297 103 0 chr11 76476244 76476409 -74307144 + L1ME2 LINE L1 5622 5803 -361 613 214 60 18 chr11 76476537 76476705 -74306848 + L1ME2 LINE L1 5987 6161 -3 218 236 187 32 chr11 76476774 76476865 -74306688 - L2 LINE L2 -247 3066 2950 2394 128 50 35 chr11 76476865 76477287 -74306266 - MSTA LTR MaLR 0 428 1 218 236 187 32 chr11 76477287 76477318 -74306235 - L2 LINE L2 -363 2950 2925 373 302 82 38 chr11 76478123 76478282 -74305271 + MIR3 SINE MIR 1 166 -42 1847 142 13 19 chr11 76478734 76479045 -74304508 - AluSx SINE Alu -3 309 1 2741 178 52 16 chr11 76479076 76479473 -74304080 + L1MC3 LINE L1 7205 7629 -156 2250 106 3 0 chr11 76479473 76479776 -74303777 + AluSg SINE Alu 1 304 -6 2741 178 52 16 chr11 76479776 76479939 -74303614 + L1MC3 LINE L1 7629 7785 0 609 164 0 0 chr11 76480405 76480521 -74303032 + (TCCA)n Simple_repeat Simple_repeat 1 116 0 332 351 67 6 chr11 76482392 76482557 -74300996 + MIR SINE MIR 83 257 -5 1004 101 17 17 chr11 76482557 76482736 -74300817 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 250 283 125 0 chr11 76482736 76482856 -74300697 - L2 LINE L2 -5 3267 3133 3941 181 46 17 chr11 76483647 76484895 -74298658 + L1MB4 LINE L1 4892 6174 -6 800 290 102 38 chr11 76484965 76485493 -74298060 + L2 LINE L2 2421 2983 -289 650 281 88 13 chr11 76485600 76485838 -74297715 + MIR SINE MIR 6 261 -1 532 176 15 0 chr11 76485840 76485971 -74297582 + CT-rich Low_complexity Low_complexity 2 134 0 394 251 95 1 chr11 76486448 76486576 -74296977 - MIR SINE MIR -55 153 16 861 103 97 14 chr11 76487235 76487380 -74296173 - AluJb SINE Alu 0 312 156 329 284 99 14 chr11 76487388 76487529 -74296024 + MIR SINE MIR 86 238 -24 23 86 0 0 chr11 76488398 76488456 -74295097 + GC_rich Low_complexity Low_complexity 1 58 0 2214 193 41 0 chr11 76492481 76492900 -74290653 - L1MB5 LINE L1 -8 6166 5731 1112 238 8 0 chr11 76493219 76493454 -74290099 - MIR SINE MIR -5 257 21 743 308 62 33 chr11 76493474 76493594 -74289959 + MER113 DNA MER1_type? 1 116 -405 2307 94 0 3 chr11 76493594 76493903 -74289650 - AluSc SINE Alu -1 308 1 1990 171 8 34 chr11 76493912 76494039 -74289514 - L1MB3 LINE L1 -1 6182 6053 2252 75 17 3 chr11 76494039 76494333 -74289220 - AluY SINE Alu -13 298 1 1990 171 8 34 chr11 76494333 76494590 -74288963 - L1MB3 LINE L1 -130 6053 5808 743 308 62 33 chr11 76494590 76494913 -74288640 + MER113 DNA MER1_type? 123 467 -54 252 240 67 29 chr11 76495047 76495151 -74288402 - MER113 DNA MER1_type? -196 325 218 476 263 45 8 chr11 76495168 76495301 -74288252 - MIR SINE MIR -94 168 31 1717 171 3 13 chr11 76496024 76496339 -74287214 + AluJo SINE Alu 1 312 0 983 185 39 19 chr11 76497910 76498115 -74285438 - MLT1B LTR MaLR -17 373 165 1448 172 7 0 chr11 76498138 76498411 -74285142 - AluY SINE Alu 0 311 37 2006 65 8 0 chr11 76498512 76498774 -74284779 - AluY SINE Alu -34 277 14 471 215 244 0 chr11 76498774 76498909 -74284644 - MLT1B LTR MaLR -222 168 1 411 135 54 0 chr11 76500038 76500112 -74283441 - MLT1B LTR MaLR -149 241 164 471 301 45 11 chr11 76500488 76500664 -74282889 + MIR SINE MIR 76 257 -5 1991 129 0 19 chr11 76500668 76500978 -74282575 - AluSx SINE Alu -8 304 1 1785 244 45 21 chr11 76701358 76701915 -74081638 - HAL1 LINE L1 -741 1766 1197 1778 142 4 11 chr11 76701917 76702192 -74081361 - AluSx SINE Alu -8 304 32 242 253 68 27 chr11 76703006 76703127 -74080426 - MIR SINE MIR -84 124 4 1649 180 0 7 chr11 76703255 76703567 -74079986 - AluJb SINE Alu 0 311 2 1357 215 114 5 chr11 76703622 76704026 -74079527 - MLT1C LTR MaLR 0 467 20 1670 172 17 40 chr11 76704026 76704374 -74079179 - L1MA5 LINE L1 0 6300 5961 2338 149 2 52 chr11 76704375 76704800 -74078753 - L1MA5 LINE L1 -458 5842 5446 1910 141 43 0 chr11 76704800 76705099 -74078454 - AluSx SINE Alu 0 312 1 2338 149 2 52 chr11 76705099 76705189 -74078364 - L1MA5 LINE L1 -854 5446 5353 1881 66 0 8 chr11 76705289 76705533 -74078020 - AluY SINE Alu -69 242 1 21 36 0 0 chr11 76705539 76705567 -74077986 + AT_rich Low_complexity Low_complexity 1 28 0 310 301 8 16 chr11 76705570 76705693 -74077860 - MLT2E LTR ERVL -2 626 505 427 320 21 70 chr11 76705819 76706150 -74077403 + ERVL LTR ERVL 318 632 -5132 544 312 69 27 chr11 76706165 76706498 -74077055 + ERVL LTR ERVL 860 1206 -4558 2178 109 3 0 chr11 76706511 76706814 -74076739 - AluSq SINE Alu -9 304 1 2145 130 3 0 chr11 76706814 76707121 -74076432 - AluSx SINE Alu -4 308 1 778 263 91 0 chr11 76707181 76707379 -74076174 - MER20 DNA MER1_type 0 219 4 871 238 115 76 chr11 76708188 76708545 -74075008 - MLT1A2 LTR MaLR -3 371 1 289 283 71 18 chr11 76708632 76708745 -74074808 + MIR SINE MIR 65 183 -79 415 243 117 0 chr11 76709218 76709329 -74074224 - L2 LINE L2 -13 3259 3136 1907 134 0 14 chr11 76709392 76709682 -74073871 + AluSx SINE Alu 6 291 -21 539 224 0 6 chr11 76709861 76710026 -74073527 + (TCCA)n Simple_repeat Simple_repeat 1 164 0 1135 220 65 82 chr11 76710306 76710681 -74072872 - MLT1E2 LTR MaLR 0 626 257 2061 71 11 4 chr11 76710681 76710949 -74072604 + AluSc SINE Alu 19 288 -21 1135 220 65 82 chr11 76710949 76711001 -74072552 - MLT1E2 LTR MaLR -369 257 206 22 0 0 0 chr11 76711036 76711058 -74072495 + AT_rich Low_complexity Low_complexity 1 22 0 1919 83 68 122 chr11 76711068 76711512 -74072041 + MER4A LTR ERV1 1 420 -244 663 117 0 19 chr11 76711557 76711660 -74071893 - AluSx SINE Alu 0 312 212 629 110 213 7 chr11 76711675 76711811 -74071742 + MER4C LTR ERV1 302 465 0 2436 151 35 2 chr11 76711811 76712274 -74071279 - L1MB3 LINE L1 -46 6137 5660 1873 86 0 0 chr11 76712274 76712508 -74071045 + AluSq SINE Alu 1 234 -79 465 111 0 25 chr11 76712522 76712603 -74070950 + MER41C LTR ERV1 1 79 -475 255 220 0 17 chr11 76712593 76712652 -74070901 + MER41A LTR ERV1 23 80 -474 * 319 82 0 20 chr11 76712642 76712691 -74070862 + MER41C LTR ERV1 23 70 -484 2061 141 80 13 chr11 76712691 76713089 -74070464 + MER41C LTR ERV1 23 447 -107 182 278 233 0 chr11 76713761 76713851 -74069702 - MIR SINE MIR -85 177 67 1683 120 0 0 chr11 76717329 76717563 -74065990 - AluSx SINE Alu -78 234 1 456 314 24 5 chr11 76717612 76717822 -74065731 + L1M4 LINE L1 4110 4323 -1823 385 287 17 0 chr11 76717901 76718016 -74065537 - MLT1I LTR MaLR -203 206 90 * 1635 236 55 15 chr11 76718012 76718466 -74065087 + MLT1E LTR MaLR 122 593 0 297 326 38 11 chr11 76718551 76718735 -74064818 + L1M4 LINE L1 4955 5143 -1003 2462 91 30 21 chr11 76718972 76719344 -74064209 - THE1C LTR MaLR 0 375 1 242 327 20 0 chr11 76720242 76720343 -74063210 - AluSq/x SINE Alu -200 103 1 2821 157 34 5 chr11 76720343 76721066 -74062487 - L1M2 LINE L1 -859 5441 4557 515 155 17 26 chr11 76721075 76721191 -74062362 + ORSL DNA AcHobo 137 251 -24 254 281 10 52 chr11 76721945 76722041 -74061512 - MIR3 SINE MIR -12 196 105 503 260 51 28 chr11 76722077 76722254 -74061299 + MIR SINE MIR 3 183 -66 331 305 11 51 chr11 76722935 76723017 -74060536 + Charlie5 DNA MER1_type 10 94 -2530 987 163 41 10 chr11 76723017 76723213 -74060340 + L1MA1 LINE L1 6097 6298 -4 331 305 11 51 chr11 76723213 76723248 -74060305 + Charlie5 DNA MER1_type 94 129 -2495 2285 100 0 0 chr11 76723248 76723547 -74060006 + AluSg SINE Alu 1 299 -11 331 305 11 51 chr11 76723547 76723605 -74059948 + Charlie5 DNA MER1_type 129 179 -2445 815 185 92 0 chr11 76723609 76723836 -74059717 + Charlie5 DNA MER1_type 2354 2601 -11 950 179 115 0 chr11 76723838 76724056 -74059497 - Tigger5 DNA MER2_type 0 2323 2081 352 213 38 12 chr11 76724046 76724126 -74059427 - Tigger5 DNA MER2_type -2241 82 1 * 385 179 123 9 chr11 76724130 76724236 -74059317 + Tigger2a DNA MER2_type 1 118 -316 187 234 32 53 chr11 76724257 76724351 -74059202 + (GGGTG)n Simple_repeat Simple_repeat 3 94 0 282 249 5 58 chr11 76724377 76724566 -74058987 + (TGGG)n Simple_repeat Simple_repeat 1 179 0 * 290 203 28 39 chr11 76724543 76724725 -74058828 + (TGG)n Simple_repeat Simple_repeat 1 180 0 * 345 141 74 30 chr11 76724595 76724730 -74058823 + (GTGTG)n Simple_repeat Simple_repeat 1 141 0 413 232 72 29 chr11 76725207 76725345 -74058208 - MIR SINE MIR -98 164 21 377 182 0 0 chr11 76725578 76725644 -74057909 - MIR SINE MIR -113 149 84 419 297 86 19 chr11 76725988 76726084 -74057469 + MIR SINE MIR 5 93 -169 2150 110 0 7 chr11 76726084 76726384 -74057169 - AluSx SINE Alu -14 298 1 419 297 86 19 chr11 76726384 76726496 -74057057 + MIR SINE MIR 93 227 -35 273 326 170 0 chr11 76727058 76727199 -74056354 - MIR SINE MIR -17 245 81 259 205 96 48 chr11 76728039 76728122 -74055431 - L2 LINE L2 -1 3312 3226 2226 81 3 0 chr11 76730360 76730645 -74052908 - AluSx SINE Alu -26 286 1 722 134 0 0 chr11 76730647 76730766 -74052787 + MER41A LTR ERV1 436 554 0 466 216 42 72 chr11 76730766 76730933 -74052620 - MLT1E2 LTR MaLR -464 162 1 433 265 66 33 chr11 76730951 76731132 -74052421 + L1ME LINE L1 5302 5488 -676 205 0 83 28 chr11 76731190 76731226 -74052327 + T-rich Low_complexity Low_complexity 4 41 0 2191 81 3 13 chr11 76731794 76732092 -74051461 + AluSx SINE Alu 1 295 -17 266 275 0 0 chr11 76732115 76732184 -74051369 + MIR SINE MIR 82 150 -58 321 282 0 0 chr11 76732334 76732412 -74051141 - L2 LINE L2 -11 3261 3184 * 435 271 48 28 chr11 76732386 76732586 -74050967 + MIR SINE MIR 9 209 -53 294 284 35 71 chr11 76732776 76732945 -74050608 - MIR3 SINE MIR -37 171 9 2174 113 0 3 chr11 76733154 76733456 -74050097 + AluSx SINE Alu 1 301 -11 225 303 28 0 chr11 76733795 76733904 -74049649 + MER113 DNA MER1_type? 1 112 -409 794 224 45 0 chr11 76734004 76734183 -74049370 - MLT1E LTR MaLR 0 542 356 2525 223 55 53 chr11 76734203 76735007 -74048546 - MER21B LTR ERV1 -58 805 1 1140 289 35 23 chr11 76735026 76735421 -74048132 - MLT1E LTR MaLR -193 400 1 664 241 138 32 chr11 76736057 76736473 -74047080 + MLT1C LTR MaLR 1 459 -8 259 284 57 0 chr11 76737402 76737490 -74046063 + MIR SINE MIR 56 148 -114 353 233 97 10 chr11 76738603 76738706 -74044847 - MIR SINE MIR -130 132 21 2061 92 11 0 chr11 76739797 76740070 -74043483 - AluY SINE Alu -35 276 1 214 349 221 10 chr11 76741290 76741674 -74041879 + L2 LINE L2 2816 3280 -33 1227 100 0 0 chr11 76741722 76742043 -74041510 + (TGGA)n Simple_repeat Simple_repeat 1 321 0 1571 257 46 19 chr11 76742560 76742992 -74040561 + MLT1J2 LTR MaLR 5 448 -2 382 340 116 22 chr11 76743659 76743891 -74039662 + MIR SINE MIR 1 254 -8 258 240 40 13 chr11 76744206 76744281 -74039272 + L3 LINE CR1 1161 1237 -340 * 285 319 80 32 chr11 76744280 76744468 -74039085 - L2 LINE L2 0 3313 3117 390 296 12 72 chr11 76744468 76744718 -74038835 - L2 LINE L2 -105 3208 2974 480 258 31 0 chr11 76744757 76744885 -74038668 + LTR33A LTR ERVL 57 188 -335 1141 247 56 50 chr11 76745415 76745444 -74038109 + MLT2C2 LTR ERVL 1 28 -436 2501 118 16 16 chr11 76745444 76745808 -74037745 + THE1B LTR MaLR 1 364 0 1141 247 56 50 chr11 76745808 76746239 -74037314 + MLT2C2 LTR ERVL 28 464 0 3456 60 30 5 chr11 76746814 76747247 -74036306 - MLT2A1 LTR ERVL 0 444 1 452 192 125 0 chr11 76748384 76748488 -74035065 - Tigger7 DNA MER2_type 0 2487 2371 2146 107 7 0 chr11 76750651 76750959 -74032594 - AluY SINE Alu -1 310 1 2190 107 0 0 chr11 76750960 76751258 -74032295 - AluSx SINE Alu -6 306 9 283 343 50 9 chr11 76751384 76751574 -74031979 - MIR SINE MIR -43 219 24 190 387 25 8 chr11 76751998 76752117 -74031436 - MIR SINE MIR -67 141 21 298 230 22 79 chr11 76752502 76752641 -74030912 - LTR50 LTR ERVL -212 583 453 401 339 41 0 chr11 76753169 76753364 -74030189 - ERVL LTR ERVL -370 5284 5082 350 296 78 53 chr11 76754017 76754301 -74029252 - ERVL LTR ERVL -1568 4196 3906 316 255 83 11 chr11 76754322 76754515 -74029038 - ERVL LTR ERVL -1859 3835 3597 213 65 0 0 chr11 76756053 76756084 -74027469 + (TG)n Simple_repeat Simple_repeat 1 31 0 1515 204 108 3 chr11 76756084 76756462 -74027091 - MSTB LTR MaLR -6 420 3 21 0 0 0 chr11 76758800 76758821 -74024732 + GC_rich Low_complexity Low_complexity 1 21 0 769 256 54 95 chr11 76759642 76759677 -74023876 + L1MC4 LINE L1 7560 7595 -447 2209 92 23 7 chr11 76759677 76759981 -74023572 - AluSx SINE Alu -3 309 1 769 256 54 95 chr11 76759981 76760266 -74023287 + L1MC4 LINE L1 7595 7854 -188 2170 115 13 0 chr11 76760266 76760571 -74022982 - AluSx SINE Alu -3 309 1 769 256 54 95 chr11 76760571 76760752 -74022801 + L1MC4 LINE L1 7854 8041 -1 404 283 125 34 chr11 76761036 76761333 -74022220 - MER102b DNA MER1_type -16 325 2 263 331 71 16 chr11 76762208 76762335 -74021218 + MIR3 SINE MIR 45 178 -30 247 327 80 0 chr11 76763597 76763710 -74019843 - MIR SINE MIR -58 204 83 182 61 0 61 chr11 76766344 76766377 -74017176 + (AGGGGG)n Simple_repeat Simple_repeat 5 35 0 878 130 0 0 chr11 76768115 76768273 -74015280 - AluJb SINE Alu 0 317 160 1048 178 0 0 chr11 76768304 76768473 -74015080 - AluJb SINE Alu -143 169 1 1338 163 0 120 chr11 76768480 76768806 -74014747 - AluJo SINE Alu -20 292 6 604 236 74 69 chr11 76768900 76769375 -74014178 - MLT1H LTR MaLR 0 549 2 918 206 96 22 chr11 76769381 76769653 -74013900 + MLT1J LTR MaLR 143 434 -77 411 303 33 0 chr11 76770136 76770258 -74013295 - L2 LINE L2 0 3313 3188 311 278 116 16 chr11 76770340 76770489 -74013064 + MIR SINE MIR 25 183 -52 423 350 11 0 chr11 76771049 76771226 -74012327 + (CA)n Simple_repeat Simple_repeat 1 179 0 254 348 9 9 chr11 76771210 76771322 -74012231 + (CACG)n Simple_repeat Simple_repeat 4 115 0 * 212 359 199 0 chr11 76772319 76772475 -74011078 + MIR SINE MIR 55 241 -21 180 327 27 27 chr11 76772746 76772856 -74010697 + MIR SINE MIR 19 128 -80 200 379 93 31 chr11 76773660 76773821 -74009732 + L2 LINE L2 3100 3270 -2 248 236 72 107 chr11 76774089 76774318 -74009235 + MIR3 SINE MIR 3 226 -36 1688 156 77 37 chr11 76774420 76774825 -74008728 - Tigger2 DNA MER2_type 0 2718 2298 339 186 29 0 chr11 76774826 76774928 -74008625 + GA-rich Low_complexity Low_complexity 1 105 0 777 141 126 0 chr11 76775452 76775587 -74007966 + AluJb SINE Alu 160 311 -1 2286 98 0 3 chr11 76775656 76775963 -74007590 - AluSx SINE Alu -6 306 1 277 366 14 0 chr11 76776008 76776150 -74007403 + HERV16 LTR ERVL 1252 1395 -3601 201 121 0 0 chr11 76776352 76776385 -74007168 + (T)n Simple_repeat Simple_repeat 1 33 0 2304 96 0 10 chr11 76776387 76776700 -74006853 - AluSg SINE Alu 0 310 1 1307 310 76 13 chr11 76776757 76777361 -74006192 + HERV16 LTR ERVL 1675 2316 -3448 2126 135 3 0 chr11 76777493 76777804 -74005749 + AluSx SINE Alu 1 312 0 3701 281 116 19 chr11 76777812 76778513 -74005040 + HERV16 LTR ERVL 2624 3255 -2509 2196 111 3 9 chr11 76778513 76778828 -74004725 + AluSq SINE Alu 1 313 0 2362 94 0 0 chr11 76778832 76779140 -74004413 + AluSg SINE Alu 3 310 0 3701 281 116 19 chr11 76779140 76780058 -74003495 + HERV16 LTR ERVL 3257 4407 -1357 216 0 0 0 chr11 76780062 76780086 -74003467 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1297 86 0 17 chr11 76780118 76780292 -74003261 - AluSg SINE Alu -139 171 1 800 249 33 12 chr11 76780295 76780536 -74003017 + HERV16 LTR ERVL 4403 4648 -1116 314 346 10 55 chr11 76780683 76780819 -74002734 + HERV16 LTR ERVL 5068 5194 -460 1519 120 5 0 chr11 76780819 76781036 -74002517 + AluY SINE Alu 84 301 -10 314 346 10 55 chr11 76781036 76781101 -74002452 + HERV16 LTR ERVL 5194 5260 -394 1977 96 0 7 chr11 76781394 76781664 -74001889 + AluSx SINE Alu 25 292 -20 241 329 43 21 chr11 76782544 76782684 -74000869 + MLT2E LTR ERVL 34 176 -452 221 211 0 39 chr11 76782923 76782975 -74000578 + GA-rich Low_complexity Low_complexity 5 54 0 1839 120 29 0 chr11 76783011 76783285 -74000268 + AluSx SINE Alu 1 282 -30 260 164 0 30 chr11 76783369 76783436 -74000117 + L1MC5 LINE L1 7618 7682 -279 342 337 126 34 chr11 76783892 76784169 -73999384 + L2 LINE L2 2784 3034 -279 2120 175 148 7 chr11 76784169 76784609 -73998944 - MLT1D LTR MaLR 0 505 4 342 337 126 34 chr11 76784609 76784808 -73998745 + L2 LINE L2 3034 3308 -5 231 114 0 0 chr11 76784820 76784855 -73998698 + (TGGG)n Simple_repeat Simple_repeat 2 36 0 1251 79 0 0 chr11 76784858 76785035 -73998518 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 205 152 0 0 chr11 76785038 76785071 -73998482 + (TGGG)n Simple_repeat Simple_repeat 2 34 0 1449 154 15 27 chr11 76785171 76785431 -73998122 - AluJb SINE Alu -55 257 1 1641 145 3 68 chr11 76785440 76785750 -73997803 - AluJo SINE Alu -22 290 1 2220 90 0 35 chr11 76785778 76786089 -73997464 + AluSc SINE Alu 1 300 -9 596 354 56 43 chr11 76786204 76786642 -73996911 - HAL1b LINE L1 -1080 268 25 204 158 0 0 chr11 76786642 76786680 -73996873 + CT-rich Low_complexity Low_complexity 1 38 0 556 234 40 0 chr11 76786680 76786804 -73996749 - FLAM_A SINE Alu -1 141 13 333 366 71 43 chr11 76786816 76787097 -73996456 - HAL1 LINE L1 -1245 1262 974 2324 106 0 0 chr11 76787146 76787457 -73996096 - AluSp SINE Alu -2 311 1 426 233 42 0 chr11 76788458 76788578 -73994975 + MER91A DNA MER1_type 1 125 -71 2505 47 3 0 chr11 76788816 76789116 -73994437 + AluY SINE Alu 1 301 -10 391 276 105 61 chr11 76789358 76789539 -73994014 + L2 LINE L2 2911 3099 -173 274 271 84 47 chr11 76789560 76789667 -73993886 - L2 LINE L2 0 3272 3162 198 313 16 16 chr11 76789708 76789772 -73993781 + L2 LINE L2 3239 3302 -11 252 324 72 29 chr11 76790483 76790858 -73992695 + L2 LINE L2 2624 3077 -236 1635 241 0 3 chr11 76790877 76791250 -73992303 - L1MB7 LINE L1 -19 6165 5794 273 29 0 0 chr11 76791318 76791352 -73992201 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 963 151 0 0 chr11 76791383 76791529 -73992024 + AluJb SINE Alu 165 310 -2 294 188 47 24 chr11 76791580 76791665 -73991888 - FRAM SINE Alu -14 152 66 407 245 109 5 chr11 76791894 76792078 -73991475 + LTR16C LTR ERVL 257 459 -32 301 327 91 0 chr11 76792671 76792781 -73990772 + MIR SINE MIR 31 150 -112 1776 152 0 3 chr11 76792849 76793132 -73990421 - AluJo SINE Alu 0 312 31 294 280 9 56 chr11 76793267 76793374 -73990179 - MIR SINE MIR -106 156 55 213 281 0 18 chr11 76793463 76793520 -73990033 + L2 LINE L2 3203 3258 -14 231 36 0 0 chr11 76793522 76793550 -73990003 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 214 302 48 63 chr11 76793811 76793937 -73989616 + MIR3 SINE MIR 40 163 -45 1123 217 84 131 chr11 76794443 76794565 -73988988 - MER41C LTR ERV1 0 554 428 2430 78 0 0 chr11 76794565 76794873 -73988680 + AluY SINE Alu 1 308 -3 2320 97 7 0 chr11 76794881 76795189 -73988364 + AluSx SINE Alu 1 310 -2 1123 217 84 131 chr11 76795189 76795406 -73988147 - MER41C LTR ERV1 -133 421 195 1933 128 38 0 chr11 76795406 76795695 -73987858 + AluSg SINE Alu 1 300 -10 1537 186 53 0 chr11 76795699 76795984 -73987569 - AluJb SINE Alu -11 301 2 1123 217 84 131 chr11 76795984 76796210 -73987343 - MER41C LTR ERV1 -362 192 1 2833 77 16 16 chr11 76796239 76796614 -73986939 - THE1C LTR MaLR 0 375 1 1893 223 21 23 chr11 76796844 76797314 -73986239 - MER74A LTR ERVL -89 469 1 324 237 232 24 chr11 76797314 76797511 -73986042 + L1ME LINE L1 5270 5515 -647 2887 150 31 0 chr11 76797511 76797964 -73985589 - LTR24 LTR ERV1 0 467 1 324 237 232 24 chr11 76797964 76797977 -73985576 + L1ME LINE L1 5515 5524 -638 326 212 93 8 chr11 76798086 76798204 -73985349 - L1MEd LINE L1 -4757 1553 1426 759 202 56 0 chr11 76798521 76798719 -73984834 + MER74B LTR ERVL 414 622 0 751 289 92 17 chr11 76798723 76799254 -73984299 - L1MEd LINE L1 -4873 1246 743 304 243 14 14 chr11 76799317 76799391 -73984162 - L1MDa LINE L1 -4014 2526 2453 237 292 0 0 chr11 76799421 76799486 -73984067 - HsTC2 DNA Tc2 -1344 554 490 235 231 0 0 chr11 76799491 76799543 -73984010 - HsTC2 DNA Tc2 -1606 292 241 207 69 0 0 chr11 76799543 76799572 -73983981 + (TTTAA)n Simple_repeat Simple_repeat 3 31 0 833 148 0 0 chr11 76799575 76799697 -73983856 - AluSg/x SINE Alu -30 280 159 385 274 98 6 chr11 76800128 76800292 -73983261 - MLT1I LTR MaLR -3 406 228 2041 106 0 11 chr11 76800337 76800657 -73982896 - AluSg SINE Alu 0 319 3 5842 66 96 0 chr11 76801550 76802304 -73981249 - LTR12 LTR ERV1 0 826 1 5292 89 14 20 chr11 76802561 76803425 -73980128 - L1PA13 LINE L1 0 6163 5305 3105 160 5 0 chr11 76803424 76804017 -73979536 + L1PA13 LINE L1 4688 5283 -863 * 21 0 0 0 chr11 76804348 76804369 -73979184 + AT_rich Low_complexity Low_complexity 1 21 0 186 239 0 0 chr11 76806167 76806213 -73977340 - L2 LINE L2 -21 3251 3206 194 232 58 136 chr11 76806457 76806487 -73977066 - MIR3 SINE MIR -25 183 152 1533 151 62 29 chr11 76806487 76806759 -73976794 - AluJb SINE Alu -6 306 26 194 232 58 136 chr11 76806759 76806883 -73976670 - MIR3 SINE MIR -56 152 41 237 132 0 0 chr11 76809126 76809164 -73974389 + (TG)n Simple_repeat Simple_repeat 1 38 0 353 316 99 6 chr11 76809254 76809425 -73974128 - MIR SINE MIR -29 233 47 297 248 18 28 chr11 76810311 76810420 -73973133 + C-rich Low_complexity Low_complexity 3 110 0 541 199 15 15 chr11 76810886 76811281 -73972272 + (TG)n Simple_repeat Simple_repeat 1 395 0 361 296 41 63 chr11 76812728 76812998 -73970555 + MER68 LTR ERV1 49 312 -250 184 253 0 30 chr11 76813853 76813952 -73969601 + T-rich Low_complexity Low_complexity 3 98 0 223 189 19 19 chr11 76815984 76816037 -73967516 + L3 LINE CR1 1419 1471 -106 2272 112 0 3 chr11 76816109 76816421 -73967132 - AluSx SINE Alu 0 312 2 190 352 88 11 chr11 76819159 76819250 -73964303 - MER5B DNA MER1_type -31 147 50 567 222 41 52 chr11 76819679 76819873 -73963680 - MLT1B LTR MaLR -7 383 192 277 115 19 0 chr11 76819855 76819907 -73963646 - MLT1B LTR MaLR -129 261 209 * 297 157 14 14 chr11 76819907 76819977 -73963576 - MLT1B LTR MaLR -129 261 192 * 1303 153 52 4 chr11 76819959 76820208 -73963345 - MLT1B LTR MaLR -129 261 1 1376 219 133 3 chr11 76821357 76821658 -73961895 + MER2 DNA MER2_type 3 342 -2 345 88 82 71 chr11 76822632 76822802 -73960751 + (CCCTG)n Simple_repeat Simple_repeat 3 174 0 210 342 0 37 chr11 76822857 76823044 -73960509 + (CCTG)n Simple_repeat Simple_repeat 1 180 0 378 312 0 32 chr11 76823816 76824002 -73959551 + (CCTG)n Simple_repeat Simple_repeat 1 180 0 536 226 36 0 chr11 76824387 76824524 -73959029 + MER3 DNA MER1_type 65 206 -3 21 0 0 0 chr11 76824772 76824793 -73958760 + AT_rich Low_complexity Low_complexity 1 21 0 237 323 53 23 chr11 76824838 76824971 -73958582 - L1ME LINE L1 -341 5780 5644 208 272 62 25 chr11 76826895 76826976 -73956577 + MIR SINE MIR 70 153 -55 203 264 0 57 chr11 76827595 76827701 -73955852 + (CTGGGG)n Simple_repeat Simple_repeat 1 100 0 412 343 0 6 chr11 76828872 76829101 -73954452 + (CA)n Simple_repeat Simple_repeat 1 227 0 423 240 40 0 chr11 76829823 76829923 -73953630 + MER6B DNA MER2_type 1 104 -172 232 208 0 19 chr11 76829889 76829942 -73953611 - MER6B DNA MER2_type -199 77 26 * 1074 133 0 2 chr11 76830436 76830963 -73952590 + (TGGA)n Simple_repeat Simple_repeat 1 526 0 391 299 120 16 chr11 76831305 76831489 -73952064 + MIR SINE MIR 46 248 -14 183 139 0 0 chr11 76831499 76831535 -73952018 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 391 283 196 34 chr11 76831872 76832250 -73951303 + L2 LINE L2 2834 3272 0 1072 254 78 21 chr11 76832577 76833014 -73950539 - MLT1C LTR MaLR 0 467 6 285 376 30 0 chr11 76836648 76836781 -73946772 - MIR SINE MIR -17 245 109 406 239 44 18 chr11 76836933 76837046 -73946507 - MIR SINE MIR -118 144 29 1444 238 89 7 chr11 76837217 76837642 -73945911 + MLT1C LTR MaLR 8 467 0 1019 231 105 36 chr11 76840879 76841299 -73942254 - MLT1C LTR MaLR -18 449 1 627 254 57 0 chr11 76841318 76841495 -73942058 + MER5A DNA MER1_type 3 189 0 241 314 42 0 chr11 76842089 76842207 -73941346 + Charlie4 DNA MER1_type 1772 1894 -67 1839 134 0 14 chr11 76842225 76842509 -73941044 + AluSq SINE Alu 34 313 0 1973 125 6 28 chr11 76842753 76843072 -73940481 + AluSq SINE Alu 1 312 -1 256 284 12 12 chr11 76844965 76845046 -73938507 - MIR3 SINE MIR -37 171 91 341 333 23 35 chr11 76846416 76846590 -73936963 + MIR SINE MIR 1 172 -90 286 273 45 11 chr11 76848790 76848878 -73934675 + MER91A DNA MER1_type 105 195 -1 195 129 0 0 chr11 76849417 76849448 -73934105 + (TAA)n Simple_repeat Simple_repeat 2 32 0 439 315 153 12 chr11 76849618 76849945 -73933608 - L1MC4 LINE L1 -428 7614 7242 936 292 39 42 chr11 76849948 76850507 -73933046 - L1MC4 LINE L1 -798 7063 6460 2553 11 0 0 chr11 76850857 76851143 -73932410 + AluYb8 SINE Alu 30 315 -3 1795 159 17 0 chr11 76851199 76851488 -73932065 - AluJo SINE Alu -18 294 1 456 287 19 93 chr11 76851500 76851716 -73931837 + L1ME3A LINE L1 4310 4509 -1637 1867 214 121 18 chr11 76851721 76852282 -73931271 - MLT1E3 LTR MaLR -5 619 1 432 313 59 23 chr11 76852288 76852544 -73931009 + L1ME3A LINE L1 4516 4780 -1366 329 344 39 7 chr11 76852728 76852882 -73930671 + L1ME3A LINE L1 4887 5045 -1101 870 305 114 15 chr11 76852894 76853617 -73929936 + L1ME3A LINE L1 5149 5948 -222 234 310 219 5 chr11 76854061 76854248 -73929305 - L2 LINE L2 -1477 1837 1611 180 135 0 0 chr11 76854328 76854365 -73929188 + (GGCTG)n Simple_repeat Simple_repeat 5 41 0 422 292 111 6 chr11 76855228 76855399 -73928154 - MER5A DNA MER1_type 0 189 1 266 305 24 0 chr11 76856616 76856698 -73926855 - MIR SINE MIR -117 145 62 300 231 130 19 chr11 76857139 76857247 -73926306 - MIR SINE MIR -110 152 33 297 295 108 8 chr11 76857950 76858079 -73925474 - MIR SINE MIR -29 233 92 301 333 57 7 chr11 76858943 76859084 -73924469 + MIR SINE MIR 2 149 -113 3292 210 50 43 chr11 76859240 76860416 -73923137 - L1ME1 LINE L1 -6 6160 4970 2118 115 110 86 chr11 76860621 76860959 -73922594 - MSTA LTR MaLR 0 428 77 1744 127 0 37 chr11 76860959 76861281 -73922272 - AluY SINE Alu -1 310 1 2118 115 110 86 chr11 76861281 76861360 -73922193 - MSTA LTR MaLR -351 77 1 196 290 32 0 chr11 76861632 76861694 -73921859 - MIR SINE MIR -149 113 50 203 291 0 18 chr11 76862014 76862069 -73921484 + L2 LINE L2 3219 3272 0 2379 127 25 6 chr11 76862469 76862823 -73920730 + THE1B LTR MaLR 1 361 -3 1133 135 56 47 chr11 76863446 76863661 -73919892 - MER20 DNA MER1_type -2 217 1 197 254 79 61 chr11 76863671 76863785 -73919768 - MIR SINE MIR -60 148 33 * 307 260 125 10 chr11 76863775 76863871 -73919682 + L2 LINE L2 3182 3288 -25 207 235 44 0 chr11 76864259 76864327 -73919226 + MIR SINE MIR 28 98 -164 2614 169 92 14 chr11 76864799 76865302 -73918251 - MLT1F LTR MaLR 0 542 1 1943 266 64 17 chr11 76865348 76865879 -73917674 + MER82 DNA MER2_type 98 653 0 221 333 9 0 chr11 76865912 76866017 -73917536 - L2 LINE L2 -189 3083 2978 2268 93 3 3 chr11 76866163 76866473 -73917080 - AluSg SINE Alu 0 310 1 1749 177 0 0 chr11 76866717 76867016 -73916537 - AluJb SINE Alu -12 300 2 605 127 66 30 chr11 76867072 76867228 -73916325 - LTR45B LTR ERV1 -8 517 318 478 237 10 0 chr11 76870469 76870566 -73912987 - MER81 DNA DNA 0 114 17 2198 109 0 3 chr11 76870743 76871046 -73912507 - AluSx SINE Alu -10 302 1 225 300 0 14 chr11 76871323 76871393 -73912160 + L2 LINE L2 3202 3270 -2 791 303 66 54 chr11 76871431 76871916 -73911637 - MLT1J LTR MaLR -19 492 2 1618 169 72 6 chr11 76872319 76872650 -73910903 + MLT1B LTR MaLR 1 353 -37 299 245 122 93 chr11 76872654 76872793 -73910760 - L2 LINE L2 -7 3265 3123 845 147 38 131 chr11 76872802 76873043 -73910510 + MER33 DNA MER1_type 23 266 -2358 2741 100 58 7 chr11 76873043 76873453 -73910100 - L1PA13 LINE L1 0 6163 5733 845 147 38 131 chr11 76873453 76873543 -73910010 + MER33 DNA MER1_type 266 363 0 995 46 77 15 chr11 76873637 76873767 -73909786 + MER85 DNA T2_type 2 139 0 740 336 73 24 chr11 76873769 76874151 -73909402 + L1 LINE L1 2936 3349 -2797 317 328 55 51 chr11 76874197 76874612 -73908941 + L1 LINE L1 3414 3830 -2316 455 313 130 20 chr11 76874622 76874868 -73908685 + L1 LINE L1 4138 4410 -1736 321 315 11 0 chr11 76875323 76875412 -73908141 + MER81 DNA DNA 24 113 -1 1453 221 174 35 chr11 76875455 76875881 -73907672 + MER77 LTR ERV1 54 538 -67 201 244 0 0 chr11 76875985 76876026 -73907527 + CT-rich Low_complexity Low_complexity 3 43 0 1622 170 18 4 chr11 76876406 76876683 -73906870 - AluJo SINE Alu -26 286 6 1808 138 3 7 chr11 76877488 76877798 -73905755 + AluJb SINE Alu 1 309 0 329 266 86 13 chr11 76877899 76878052 -73905501 - L2 LINE L2 -210 3062 2900 295 313 104 8 chr11 76878077 76878211 -73905342 + MER5A DNA MER1_type 43 189 0 185 161 48 48 chr11 76878919 76878981 -73904572 + MIR SINE MIR 36 97 -165 1354 219 7 20 chr11 76878994 76879286 -73904267 + MER44D DNA MER2_type 62 349 -356 1956 118 0 0 chr11 76879287 76879567 -73903986 + AluSx SINE Alu 1 280 -32 563 161 57 0 chr11 76879581 76879705 -73903848 + MER44D DNA MER2_type 323 508 -97 233 250 49 83 chr11 76880410 76880554 -73902999 - L1ME2 LINE L1 -8 6156 6018 235 200 60 0 chr11 76880670 76880720 -73902833 - LTR67 LTR ERVL -2 555 503 595 346 56 26 chr11 76880760 76881063 -73902490 - MLT1K LTR MaLR -65 523 212 2067 120 0 0 chr11 76881169 76881482 -73902071 + AluSx SINE Alu 1 313 0 2109 158 18 38 chr11 76881749 76882147 -73901406 - MLT1B LTR MaLR 0 390 1 1078 277 136 16 chr11 76882352 76882728 -73900825 + MLT1E LTR MaLR 1 421 -172 358 226 183 9 chr11 76882935 76882979 -73900574 - MLT1K LTR MaLR -3 585 550 297 0 0 0 chr11 76882979 76883012 -73900541 + (CA)n Simple_repeat Simple_repeat 2 34 0 358 226 183 9 chr11 76883012 76883082 -73900471 - MLT1K LTR MaLR -38 550 451 211 270 95 0 chr11 76883112 76883175 -73900378 - L2 LINE L2 -3 3310 3242 239 302 31 0 chr11 76883209 76883305 -73900248 - MLT1K LTR MaLR -160 428 330 217 377 57 0 chr11 76883834 76883956 -73899597 - MIR3 SINE MIR -65 143 15 399 21 0 0 chr11 76885297 76885345 -73898208 + (CA)n Simple_repeat Simple_repeat 2 49 0 2241 94 7 0 chr11 76885416 76885714 -73897839 + AluSx SINE Alu 1 300 -12 2306 82 0 3 chr11 76885738 76886044 -73897509 + AluY SINE Alu 3 307 -4 271 284 9 26 chr11 76886156 76886272 -73897281 + L1ME4a LINE L1 6007 6120 -1 764 246 218 25 chr11 76887012 76887406 -73896147 - MLT1D LTR MaLR -35 470 1 195 273 30 45 chr11 76887440 76887506 -73896047 - L2 LINE L2 0 3313 3249 1913 100 0 71 chr11 76887506 76887840 -73895713 - AluSg SINE Alu 0 312 1 1348 137 41 24 chr11 76887843 76888212 -73895341 - LTR46 LTR ERV1 0 460 1 221 276 17 0 chr11 76888375 76888433 -73895120 - L2 LINE L2 -13 3300 3242 253 291 117 51 chr11 76888599 76888932 -73894621 + L2 LINE L2 1328 1682 -1632 2252 88 3 0 chr11 76889155 76889451 -73894102 + AluSx SINE Alu 1 297 -15 244 362 43 0 chr11 76889525 76889641 -73893912 + L2 LINE L2 3138 3258 -14 242 203 23 38 chr11 76890358 76890491 -73893062 + (TATG)n Simple_repeat Simple_repeat 2 132 0 334 355 100 64 chr11 76890601 76891151 -73892402 + L1MEd LINE L1 48 617 -5502 2032 122 3 3 chr11 76891259 76891555 -73891998 + AluSx SINE Alu 1 296 -16 1144 296 106 50 chr11 76891782 76893053 -73890500 + L1M4 LINE L1 2717 4074 -2072 2255 107 0 0 chr11 76893053 76893363 -73890190 + AluSg SINE Alu 1 310 0 1144 296 106 50 chr11 76893363 76893475 -73890078 + L1M4 LINE L1 4074 4178 -1968 2625 281 104 43 chr11 76893592 76894850 -73888703 + L1MEc LINE L1 10 1190 -5027 1971 117 4 0 chr11 76894850 76895168 -73888385 + AluY SINE Alu 1 319 0 2625 281 104 43 chr11 76895168 76895298 -73888255 + L1MEc LINE L1 1190 1311 -4906 2044 148 0 0 chr11 76895298 76895609 -73887944 + AluJb SINE Alu 1 311 -1 2625 281 104 43 chr11 76895609 76895712 -73887841 + L1MEc LINE L1 1311 1444 -4773 286 218 101 56 chr11 77096406 77096561 -73686992 + MIR SINE MIR 3 154 -54 377 141 14 0 chr11 77097958 77098029 -73685524 + AluS SINE Alu 229 300 0 321 172 0 0 chr11 77098112 77098176 -73685377 + CT-rich Low_complexity Low_complexity 5 68 0 2124 118 7 7 chr11 77098193 77098490 -73685063 - AluSx SINE Alu -13 299 3 2245 110 0 13 chr11 77098643 77098977 -73684576 - AluSx SINE Alu 0 312 1 1204 214 4 0 chr11 77098997 77099226 -73684327 + Tigger7 DNA MER2_type 2 231 -502 430 149 23 23 chr11 77099241 77099328 -73684225 + Tigger7 DNA MER2_type 2395 2481 -10 264 242 16 0 chr11 77100400 77100462 -73683091 + MIR SINE MIR 90 152 -56 716 135 43 0 chr11 77101164 77101305 -73682248 - L1MA5 LINE L1 -3 6297 6151 201 39 0 0 chr11 77102325 77102351 -73681202 + (CA)n Simple_repeat Simple_repeat 2 27 0 249 197 0 16 chr11 77103136 77103197 -73680356 + G-rich Low_complexity Low_complexity 1 60 0 1103 59 7 7 chr11 77104158 77104294 -73679259 - AluY SINE Alu -175 136 1 465 345 109 34 chr11 77104471 77104966 -73678587 + L1ME3 LINE L1 3980 4511 -1635 458 318 41 64 chr11 77104971 77105097 -73678456 + MIR SINE MIR 3 123 -139 2380 107 3 0 chr11 77105097 77105406 -73678147 - AluSg SINE Alu 0 310 1 458 318 41 64 chr11 77105406 77105499 -73678054 + MIR SINE MIR 123 217 -45 2257 122 0 0 chr11 77105520 77105816 -73677737 - AluSx SINE Alu -16 296 1 1475 290 131 27 chr11 77105974 77106379 -73677174 + L1ME3 LINE L1 5240 5601 -561 2390 99 3 0 chr11 77106379 77106683 -73676870 + AluSp SINE Alu 1 305 -8 1475 290 131 27 chr11 77106683 77106694 -73676859 + L1ME3 LINE L1 5601 5609 -553 1601 188 13 13 chr11 77106694 77106997 -73676556 + AluJo SINE Alu 1 303 -9 1475 290 131 27 chr11 77106997 77107037 -73676516 + L1ME3 LINE L1 5609 5643 -519 1884 195 8 8 chr11 77107037 77107411 -73676142 + MLT1A2 LTR MaLR 1 374 0 1475 290 131 27 chr11 77107411 77107789 -73675764 + L1ME3 LINE L1 5643 6159 -3 2618 68 0 0 chr11 77107816 77108125 -73675428 + AluY SINE Alu 1 309 -2 196 338 12 0 chr11 77108279 77108359 -73675194 + L2 LINE L2 2850 2930 -342 1574 193 17 10 chr11 77108496 77108618 -73674935 + AluJb SINE Alu 1 121 -191 198 0 0 0 chr11 77108618 77108640 -73674913 + (TAA)n Simple_repeat Simple_repeat 2 23 0 1574 193 17 10 chr11 77108640 77108817 -73674736 + AluJb SINE Alu 121 302 -10 211 312 39 0 chr11 77108830 77108907 -73674646 + L2 LINE L2 3188 3267 -5 1684 190 0 32 chr11 77109101 77109411 -73674142 + AluJo SINE Alu 1 300 -12 1362 214 132 42 chr11 77109412 77109889 -73673664 + L1ME1 LINE L1 5575 6094 -72 2288 134 0 0 chr11 77110040 77110353 -73673200 + AluSq SINE Alu 1 313 0 2105 181 18 88 chr11 77110536 77111038 -73672515 + MLT2B2 LTR ERVL 1 462 -53 246 32 0 0 chr11 77111038 77111069 -73672484 + (TG)n Simple_repeat Simple_repeat 2 32 0 2105 181 18 88 chr11 77111069 77111120 -73672433 + MLT2B2 LTR ERVL 462 515 0 245 257 200 0 chr11 77111122 77111227 -73672326 + L1ME LINE L1 5739 5864 -306 1646 93 0 0 chr11 77113013 77113217 -73670336 + AluSx SINE Alu 4 207 -105 844 95 0 0 chr11 77113225 77113330 -73670223 + AluSp SINE Alu 113 217 -96 347 31 0 62 chr11 77114871 77114936 -73668617 + (GGA)n Simple_repeat Simple_repeat 1 61 0 305 265 92 105 chr11 77115236 77115348 -73668205 + MIR SINE MIR 25 137 -125 2333 122 0 0 chr11 77115348 77115659 -73667894 + AluSx SINE Alu 1 311 -1 305 265 92 105 chr11 77115659 77115784 -73667769 + MIR SINE MIR 137 259 -3 300 333 62 21 chr11 77115789 77115981 -73667572 + L3 LINE CR1 1176 1375 -202 2430 92 3 6 chr11 77117029 77117343 -73666210 - AluSq SINE Alu 0 313 1 2073 132 31 0 chr11 77117419 77117706 -73665847 - AluSx SINE Alu -16 296 1 326 232 46 12 chr11 77118459 77118567 -73664986 - MLT1I LTR MaLR 0 426 317 362 286 43 38 chr11 77118612 77118797 -73664756 - MLT1I LTR MaLR -190 219 34 384 22 0 0 chr11 77118996 77119041 -73664512 + (CA)n Simple_repeat Simple_repeat 1 45 0 642 296 30 0 chr11 77119066 77119269 -73664284 + MIR SINE MIR 11 219 -43 230 235 12 59 chr11 77119559 77119644 -73663909 + MLT1H LTR MaLR 84 164 -385 4091 82 13 20 chr11 77119791 77120397 -73663156 - LTR10E LTR ERV1 -31 602 1 291 220 55 37 chr11 77120444 77120553 -73663000 + MLT1H LTR MaLR 438 548 -1 12424 113 31 123 chr11 77120631 77121295 -73662258 + Tigger1 DNA MER2_type 2 725 -1693 1830 54 0 0 chr11 77121295 77121533 -73662020 + L1PA4 LINE L1 5917 6155 0 12424 113 31 123 chr11 77121533 77122302 -73661251 + Tigger1 DNA MER2_type 725 1563 -855 1832 155 28 10 chr11 77122302 77122593 -73660960 - AluJb SINE Alu -16 296 1 12424 113 31 123 chr11 77122593 77122810 -73660743 + Tigger1 DNA MER2_type 1563 1798 -620 2321 104 7 3 chr11 77122810 77123118 -73660435 - AluSc SINE Alu 0 309 1 12424 113 31 123 chr11 77123118 77123747 -73659806 + Tigger1 DNA MER2_type 1798 2483 65 2186 106 23 0 chr11 77123747 77124049 -73659504 + AluSc SINE Alu 1 309 0 12424 113 31 123 chr11 77124049 77124305 -73659248 + Tigger1 DNA MER2_type 2483 2290 -128 1955 124 39 0 chr11 77124305 77124588 -73658965 - AluSx SINE Alu -18 294 1 12424 113 31 123 chr11 77124588 77124708 -73658845 + Tigger1 DNA MER2_type 2289 2418 0 326 293 0 57 chr11 77124790 77124913 -73658640 + L1ME4a LINE L1 5922 6037 -84 2279 128 0 0 chr11 77125111 77125423 -73658130 - AluSx SINE Alu 0 312 1 1135 307 34 30 chr11 77126491 77126877 -73656676 + L1ME2 LINE L1 5561 5951 -213 2157 117 3 0 chr11 77126877 77127197 -73656356 + AluSq SINE Alu 1 313 0 1135 307 34 30 chr11 77127197 77127334 -73656219 + L1ME2 LINE L1 5951 6086 -78 517 178 34 25 chr11 77127384 77127502 -73656051 + MER20 DNA MER1_type 98 216 -3 243 265 84 0 chr11 77127544 77127567 -73655986 + L1ME3 LINE L1 6070 6090 -72 2094 125 7 0 chr11 77127567 77127855 -73655698 - AluSx SINE Alu -22 290 1 243 265 84 0 chr11 77127855 77127914 -73655639 + L1ME3 LINE L1 6090 6159 -3 362 267 52 44 chr11 77127929 77128064 -73655489 + MIR SINE MIR 57 192 -70 191 311 0 33 chr11 77129612 77129673 -73653880 + L2 LINE L2 3235 3293 -20 2324 125 0 0 chr11 77129714 77130019 -73653534 - AluSq SINE Alu -8 305 1 893 242 42 34 chr11 77130527 77130791 -73652762 + MLT2B1 LTR ERVL 2 267 -253 478 329 34 44 chr11 77130796 77131094 -73652459 - MLT1K LTR MaLR -284 304 10 3614 205 4 4 chr11 77131634 77131669 -73651884 - L1MB3 LINE L1 -7 6176 6142 2463 96 0 0 chr11 77131669 77131971 -73651582 - AluSx SINE Alu -10 302 1 3614 205 4 4 chr11 77131971 77132668 -73650885 - L1MB3 LINE L1 -40 6143 5444 255 235 0 0 chr11 77132674 77132725 -73650828 - L1M3 LINE L1 -677 5494 5444 255 235 0 0 chr11 77132731 77132782 -73650771 - L1M3 LINE L1 -677 5494 5444 253 235 0 0 chr11 77132788 77132839 -73650714 - L1M3 LINE L1 -677 5494 5444 368 297 33 20 chr11 77133147 77133377 -73650176 - L1M1 LINE L1 -645 5517 5316 9246 131 6 11 chr11 77133844 77136344 -73647209 - L1MA3 LINE L1 -105 6200 3707 2319 84 0 7 chr11 77136446 77136732 -73646821 - AluY SINE Alu -27 284 1 734 207 13 113 chr11 77137390 77137466 -73646087 - L1MB8 LINE L1 0 6184 6102 1728 180 3 0 chr11 77137466 77137749 -73645804 + AluJb SINE Alu 29 312 0 734 207 13 113 chr11 77137749 77138002 -73645551 - L1MB8 LINE L1 -82 6102 5875 326 242 0 81 chr11 77139032 77139218 -73644335 + GA-rich Low_complexity Low_complexity 6 176 0 1030 217 138 32 chr11 77139971 77140413 -73643140 + MER74B LTR ERVL 59 547 -75 1833 229 40 76 chr11 77142069 77142769 -73640784 + L1MB8 LINE L1 5422 6096 -82 3768 158 53 23 chr11 77142769 77143090 -73640463 + Tigger3b DNA MER2_type 1 311 -2717 2140 132 3 3 chr11 77143090 77143394 -73640159 + AluSq SINE Alu 1 304 -9 2105 121 10 3 chr11 77143399 77143696 -73639857 + AluSx SINE Alu 1 299 -13 3768 158 53 23 chr11 77143696 77144027 -73639526 + Tigger3b DNA MER2_type 314 686 -2342 2254 91 0 32 chr11 77144027 77144335 -73639218 - AluY SINE Alu -13 298 1 3768 158 53 23 chr11 77144335 77144417 -73639136 + Tigger3b DNA MER2_type 686 764 -467 2299 104 7 0 chr11 77144427 77144736 -73638817 - AluSp SINE Alu 0 313 3 495 243 162 0 chr11 77145372 77145508 -73638045 - MER58A DNA MER1_type -16 208 51 3887 184 48 51 chr11 77145515 77145784 -73637769 + L1MB3 LINE L1 5210 5478 -705 2028 124 0 55 chr11 77145784 77146114 -73637439 + AluSx SINE Alu 1 312 0 1728 165 3 40 chr11 77146117 77146414 -73637139 + AluJb SINE Alu 1 286 -26 243 0 0 0 chr11 77146417 77146444 -73637109 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3887 184 48 51 chr11 77146444 77147094 -73636459 + L1MB3 LINE L1 5482 6131 -52 2502 70 0 10 chr11 77147094 77147396 -73636157 + AluSq SINE Alu 1 299 -14 3887 184 48 51 chr11 77147396 77147447 -73636106 + L1MB3 LINE L1 6131 6181 -2 266 324 0 0 chr11 77147451 77147522 -73636031 - MER58A DNA MER1_type -36 71 1 1748 170 42 12 chr11 77149516 77149846 -73633707 - MER2 DNA MER2_type -4 340 1 249 265 60 0 chr11 77150213 77150296 -73633257 + MIR SINE MIR 63 150 -112 3248 240 85 24 chr11 77151062 77152015 -73631538 + L1MD1 LINE L1 2 895 -5645 2184 120 10 0 chr11 77152015 77152314 -73631239 + AluSq SINE Alu 1 302 -11 3248 240 85 24 chr11 77152314 77153958 -73629595 + L1MD1 LINE L1 895 3101 -3439 * 6416 227 52 43 chr11 77153954 77154649 -73628904 + L1MD1 LINE L1 3394 4082 -2554 2175 132 0 0 chr11 77154649 77154937 -73628616 + AluSq SINE Alu 1 288 -25 6416 227 52 43 chr11 77154937 77155661 -73627892 + L1MD1 LINE L1 4082 4799 -1837 2226 103 30 3 chr11 77155661 77155962 -73627591 + AluSc SINE Alu 1 309 0 6416 227 52 43 chr11 77155962 77156210 -73627343 + L1MD1 LINE L1 4799 5043 -1593 1781 117 11 34 chr11 77156210 77156474 -73627079 + AluSx SINE Alu 32 289 -23 2232 91 42 0 chr11 77156474 77156759 -73626794 + AluY SINE Alu 1 298 -13 6416 227 52 43 chr11 77156759 77157779 -73625774 + L1MD1 LINE L1 5043 6053 -583 1778 179 10 3 chr11 77157779 77158086 -73625467 + AluJo SINE Alu 1 309 -3 6416 227 52 43 chr11 77158086 77158596 -73624957 + L1MD1 LINE L1 6053 6613 -23 1976 165 26 97 chr11 77158596 77159062 -73624491 + Tigger2a DNA MER2_type 2 434 0 6416 227 52 43 chr11 77159062 77159086 -73624467 + L1MD1 LINE L1 6613 6635 -1 982 298 37 26 chr11 77159089 77159646 -73623907 + L1MD1 LINE L1 5564 5997 -245 2099 228 14 29 chr11 77159138 77159203 -73624350 + L1MB7 LINE L1 5624 5688 -496 721 163 23 8 chr11 77159203 77159332 -73624221 + FLAM_C SINE Alu 1 131 -2 2099 228 14 29 chr11 77159332 77159819 -73623734 + L1MB7 LINE L1 5688 6168 -16 2102 131 7 0 chr11 77159939 77160236 -73623317 + AluSx SINE Alu 1 299 -13 1977 114 3 59 chr11 77160239 77160586 -73622967 + AluSg SINE Alu 1 310 0 460 269 23 0 chr11 77161045 77161220 -73622333 + L1MB5 LINE L1 5681 5859 -315 522 241 59 86 chr11 77161230 77161450 -73622103 + MER21B LTR ERV1 12 225 -638 2339 100 3 0 chr11 77161485 77161784 -73621769 + AluSq SINE Alu 1 300 -13 1746 127 0 12 chr11 77162500 77162744 -73620809 + AluSx SINE Alu 1 241 -71 524 246 9 0 chr11 77162800 77162914 -73620639 + MER58A DNA MER1_type 4 118 0 266 114 0 23 chr11 77162954 77162998 -73620555 + AluSx SINE Alu 247 289 -12 267 200 0 0 chr11 77163001 77163056 -73620497 + AluSx SINE Alu 248 302 0 580 208 167 6 chr11 77163459 77163627 -73619926 + MER58A DNA MER1_type 4 198 -26 251 272 45 114 chr11 77163681 77163883 -73619670 - MIR SINE MIR -66 196 9 571 235 81 0 chr11 77164548 77164684 -73618869 - MIR SINE MIR -54 208 62 1002 57 0 0 chr11 77165073 77165195 -73618358 - LTR5 LTR ERVK 0 969 848 236 266 107 0 chr11 77165393 77165520 -73618033 + MIR SINE MIR 99 244 -18 1595 162 10 58 chr11 77165640 77165948 -73617605 - AluJb SINE Alu -19 293 1 185 315 110 0 chr11 77166313 77166386 -73617167 + MER5A DNA MER1_type 46 126 -63 370 147 13 0 chr11 77166743 77166818 -73616735 - Charlie5 DNA MER1_type 0 2620 2545 1131 135 40 72 chr11 77166820 77167042 -73616511 + AluJo SINE Alu 1 215 -97 421 272 115 31 chr11 77167102 77167466 -73616087 + L1ME LINE L1 5410 5800 -370 2552 188 27 2 chr11 77168080 77168591 -73614962 + L1MB3 LINE L1 5660 6183 0 502 291 113 29 chr11 77168630 77168905 -73614648 + L2 LINE L2 2967 3264 -49 3132 250 48 14 chr11 77168905 77169586 -73613967 + L1M4 LINE L1 2637 3368 -2778 2360 94 0 3 chr11 77169586 77169893 -73613660 + AluY SINE Alu 1 306 -5 3132 250 48 14 chr11 77169893 77170242 -73613311 + L1M4 LINE L1 3368 3703 -2443 1328 218 70 62 chr11 77170655 77170877 -73612676 + Charlie1b DNA MER1_type 52 271 -2490 2074 130 0 3 chr11 77170877 77171170 -73612383 - AluSx SINE Alu -14 298 7 1328 218 70 62 chr11 77171170 77171181 -73612372 + Charlie1b DNA MER1_type 271 280 -2481 1940 140 4 0 chr11 77171181 77171452 -73612101 - AluJb SINE Alu -40 272 1 1328 218 70 62 chr11 77171452 77171685 -73611868 + Charlie1b DNA MER1_type 280 523 0 1337 243 109 8 chr11 77173016 77173530 -73610023 + Charlie2 DNA MER1_type 2236 2801 -61 416 338 35 20 chr11 77174729 77174930 -73608623 + MIR SINE MIR 39 242 -20 20651 138 32 54 chr11 77178101 77181069 -73602484 - L1 LINE L1 -2621 4944 1983 2241 156 86 8 chr11 77181069 77181466 -73602087 - MSTA LTR MaLR 0 428 1 20651 138 32 54 chr11 77181466 77183393 -73600160 - L1 LINE L1 -5582 1983 15 236 139 0 0 chr11 77183912 77183948 -73599605 + MER53 DNA DNA 1 36 -153 4762 138 19 62 chr11 77183949 77184009 -73599544 + L1MC1 LINE L1 5386 5447 -886 2249 102 0 10 chr11 77184009 77184302 -73599251 + AluY SINE Alu 1 290 -21 4762 138 19 62 chr11 77184302 77184922 -73598631 + L1MC1 LINE L1 5447 6014 -319 1921 138 10 22 chr11 77184922 77185233 -73598320 - AluJo SINE Alu -5 307 1 4762 138 19 62 chr11 77185233 77185523 -73598030 + L1MC1 LINE L1 6014 6315 -18 443 198 10 10 chr11 77185551 77185652 -73597901 - MER53 DNA DNA -13 176 76 607 206 103 7 chr11 77186300 77186446 -73597107 - L2 LINE L2 -1 3312 3153 1496 196 73 60 chr11 77186480 77186960 -73596593 + MLT1D LTR MaLR 1 486 -19 205 288 0 0 chr11 77187001 77187060 -73596493 - L2 LINE L2 -239 3074 3016 1068 231 75 55 chr11 77187342 77187697 -73595856 + MLT1C LTR MaLR 2 373 -94 2170 110 35 0 chr11 77187697 77187987 -73595566 + AluSx SINE Alu 1 300 -12 1068 231 75 55 chr11 77187987 77188084 -73595469 + MLT1C LTR MaLR 373 467 0 1066 113 0 0 chr11 77188855 77188996 -73594557 - AluSq/x SINE Alu -172 141 1 396 179 60 0 chr11 77188996 77189127 -73594426 - MLT1D LTR MaLR -83 386 248 226 140 70 18 chr11 77189541 77189598 -73593955 - LTR50 LTR ERVL -18 777 718 246 116 0 0 chr11 77189914 77189957 -73593596 + (CAG)n Simple_repeat Simple_repeat 2 44 0 1618 187 28 3 chr11 77190347 77190636 -73592917 - AluJo SINE Alu -16 296 1 1897 230 39 18 chr11 77190667 77191159 -73592394 - MLT1D LTR MaLR -3 502 1 944 322 79 21 chr11 77191369 77191835 -73591718 - ERVL LTR ERVL -438 5326 4834 1481 188 44 13 chr11 77192301 77192599 -73590954 + AluJb SINE Alu 3 309 -3 1480 234 42 35 chr11 77192638 77193095 -73590458 + MLT1C LTR MaLR 7 466 -1 191 232 54 0 chr11 77193739 77193795 -73589758 + L3 LINE CR1 1105 1163 -414 2301 108 0 9 chr11 77193818 77194133 -73589420 - AluSq SINE Alu -1 312 1 2634 55 3 0 chr11 77194387 77194697 -73588856 - AluY SINE Alu 0 311 1 335 191 119 0 chr11 77195112 77195196 -73588357 - MLT1G3 LTR MaLR -203 327 234 972 222 8 26 chr11 77195198 77195432 -73588121 - MER49 LTR ERV1 0 923 694 848 173 20 0 chr11 77195423 77195573 -73587980 - MER49 LTR ERV1 -675 248 96 * 2185 120 3 3 chr11 77196487 77196795 -73586758 + AluSc SINE Alu 1 308 -1 1265 120 53 14 chr11 77196916 77197124 -73586429 - MER4B LTR ERV1 0 610 395 228 135 0 0 chr11 77197891 77197928 -73585625 + (A)n Simple_repeat Simple_repeat 1 37 0 1292 115 53 14 chr11 77198040 77198248 -73585305 - MER4B LTR ERV1 0 610 395 1446 214 188 6 chr11 77198780 77199265 -73584288 - MER45B DNA AcHobo -10 1030 458 2132 135 3 0 chr11 77199267 77199563 -73583990 + AluJb SINE Alu 1 297 -15 1859 174 43 11 chr11 77199568 77199936 -73583617 + MLT1B LTR MaLR 11 390 0 673 174 26 0 chr11 77200003 77200118 -73583435 - FLAM_C SINE Alu -15 118 1 375 278 90 0 chr11 77200125 77200258 -73583295 - MER45B DNA AcHobo -604 436 292 666 226 20 0 chr11 77200316 77200462 -73583091 - MER45B DNA AcHobo -862 178 30 2215 206 165 40 chr11 77200823 77201556 -73581997 - LTR1B LTR ERV1 -1 825 1 2211 113 3 26 chr11 77201579 77201889 -73581664 + AluSx SINE Alu 1 303 -9 445 207 157 25 chr11 77202183 77202304 -73581249 - MLT1C LTR MaLR -1 466 330 840 174 35 6 chr11 77202357 77202529 -73581024 - L1MC/D LINE L1 -791 5622 5446 1467 225 39 49 chr11 77202529 77202915 -73580638 + MLT1B LTR MaLR 1 382 -8 792 128 0 0 chr11 77202957 77203074 -73580479 - FLAM_C SINE Alu -16 117 1 10098 247 62 30 chr11 77203074 77205873 -73577680 - L1MEc LINE L1 -780 5435 2726 2236 131 0 3 chr11 77205873 77206187 -73577366 - AluSq SINE Alu 0 313 1 10098 247 62 30 chr11 77206187 77207127 -73576426 - L1MEc LINE L1 -3489 2726 1817 1553 189 0 18 chr11 77207127 77207408 -73576145 - AluJo SINE Alu -5 307 32 10098 247 62 30 chr11 77207408 77207423 -73576130 - L1MEc LINE L1 -4398 1817 1804 228 35 0 0 chr11 77207423 77207452 -73576101 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 10098 247 62 30 chr11 77207452 77207801 -73575752 - L1MEc LINE L1 -4411 1804 1468 1842 184 0 3 chr11 77207801 77208100 -73575453 - AluJo SINE Alu -11 301 4 10098 247 62 30 chr11 77208100 77208502 -73575051 - L1MEc LINE L1 -4747 1468 830 2539 132 31 2 chr11 77210008 77210424 -73573129 + MSTA LTR MaLR 1 428 0 264 238 50 0 chr11 77210588 77210668 -73572885 + MIR SINE MIR 68 151 -111 323 253 55 0 chr11 77212555 77212646 -73570907 + L2 LINE L2 3204 3299 -14 183 280 127 8 chr11 77213036 77213154 -73570399 - L2 LINE L2 -220 3052 2921 339 319 135 37 chr11 77213217 77213329 -73570224 - L2 LINE L2 -510 2804 2704 2146 102 14 17 chr11 77213329 77213622 -73569931 + AluSx SINE Alu 3 294 -18 339 319 135 37 chr11 77213622 77214020 -73569533 - L2 LINE L2 -610 2704 2244 765 247 65 59 chr11 77214115 77214549 -73569004 + MLT1C LTR MaLR 8 358 -16 1151 192 55 0 chr11 77214652 77214907 -73568646 + MLT1B LTR MaLR 122 390 0 254 296 51 0 chr11 77216527 77216625 -73566928 + MIR SINE MIR 110 212 -50 223 293 136 21 chr11 77216610 77216750 -73566803 + L2 LINE L2 1870 2025 -1289 * 1098 205 27 109 chr11 77216750 77217043 -73566510 - AluJo SINE Alu -43 269 1 2069 116 0 53 chr11 77217063 77217381 -73566172 - AluSc SINE Alu -8 301 1 188 302 230 21 chr11 77217389 77217720 -73565833 + L2 LINE L2 2109 2508 -806 1178 130 6 0 chr11 77217720 77217889 -73565664 + AluJb SINE Alu 136 305 -7 395 325 27 11 chr11 77217893 77218081 -73565472 + L2 LINE L2 2510 2700 -614 2548 108 15 22 chr11 77218085 77218547 -73565006 - MER1A DNA MER1_type 0 529 31 647 287 71 56 chr11 77218552 77219146 -73564407 + L2 LINE L2 2699 3308 -5 235 250 67 0 chr11 77221830 77221890 -73561663 + MIR SINE MIR 87 150 -112 398 344 33 53 chr11 77222547 77222791 -73560762 + MIR SINE MIR 10 248 -14 267 270 0 0 chr11 77224125 77224188 -73559365 - L3 LINE CR1 -530 1047 985 390 258 65 8 chr11 77225064 77225188 -73558365 + MER94 DNA DNA 1 131 -3 274 250 29 0 chr11 77225632 77225700 -73557853 + LTR67 LTR ERVL 114 183 -374 270 217 33 58 chr11 77225948 77226068 -73557485 + LTR67 LTR ERVL 438 554 -3 840 126 0 14 chr11 77226262 77226405 -73557148 + MSTB LTR MaLR 6 146 -280 2379 105 0 0 chr11 77226808 77227113 -73556440 - AluSx SINE Alu -7 305 1 1385 175 75 11 chr11 77227296 77227576 -73555977 + MSTB LTR MaLR 127 424 -2 317 242 51 57 chr11 77227749 77227906 -73555647 + MER53 DNA DNA 27 182 -7 * 459 200 14 50 chr11 77227774 77227914 -73555639 - MER53 DNA DNA -46 143 9 779 340 94 18 chr11 77229532 77229782 -73553771 + L2 LINE L2 2435 2664 -649 2223 117 0 13 chr11 77229782 77230089 -73553464 - AluSx SINE Alu -9 303 1 779 340 94 18 chr11 77230089 77230414 -73553139 + L2 LINE L2 2664 3059 -254 205 376 32 6 chr11 77230590 77230747 -73552806 - L2 LINE L2 -235 3037 2877 265 340 120 21 chr11 77230790 77231031 -73552522 - L2 LINE L2 -492 2822 2558 507 114 13 0 chr11 77231216 77231295 -73552258 + MLT1B LTR MaLR 6 85 -305 1740 192 10 3 chr11 77231302 77231609 -73551944 - AluJb SINE Alu -3 309 1 899 132 0 0 chr11 77231627 77231748 -73551805 - FLAM_C SINE Alu -20 123 3 1029 173 100 0 chr11 77231748 77231979 -73551574 + MLT1B LTR MaLR 80 333 -57 436 301 72 0 chr11 77232650 77232803 -73550750 + MIR SINE MIR 16 179 -83 189 178 0 55 chr11 77232869 77232942 -73550611 + CT-rich Low_complexity Low_complexity 3 71 0 344 261 99 0 chr11 77233997 77234108 -73549445 + MER5A DNA MER1_type 36 157 -32 2372 95 0 0 chr11 77234108 77234414 -73549139 - AluSq SINE Alu -7 306 1 254 375 7 0 chr11 77234642 77234778 -73548775 + MLT1I LTR MaLR 4 140 -269 524 237 0 0 chr11 77234936 77235050 -73548503 + MLT1I LTR MaLR 296 409 0 21 36 0 0 chr11 77235066 77235094 -73548459 + AT_rich Low_complexity Low_complexity 1 28 0 189 330 103 77 chr11 77235113 77235386 -73548167 + L2 LINE L2 2992 3271 -1 21 36 0 0 chr11 77235504 77235532 -73548021 + AT_rich Low_complexity Low_complexity 1 28 0 1114 292 208 15 chr11 77235572 77236639 -73546914 - L2 LINE L2 -6 3307 2030 832 256 88 14 chr11 77236642 77236993 -73546560 - LTR37A LTR ERV1 -20 406 30 675 284 87 0 chr11 77237052 77237306 -73546247 - L2 LINE L2 -1275 2039 1764 201 222 48 16 chr11 77237739 77237802 -73545751 - MIR SINE MIR -178 84 20 2264 105 0 26 chr11 77239225 77239530 -73544023 - AluSx SINE Alu -15 297 1 195 114 0 0 chr11 77239634 77239669 -73543884 + (TG)n Simple_repeat Simple_repeat 1 35 0 340 249 218 42 chr11 77239672 77239865 -73543688 - HAL1 LINE L1 -41 2466 2240 939 141 0 0 chr11 77239886 77240021 -73543532 + FLAM_C SINE Alu 9 143 0 1382 180 77 0 chr11 77240045 77240278 -73543275 - AluJb SINE Alu -61 251 1 226 314 83 39 chr11 77241547 77241703 -73541850 + L3 LINE CR1 1396 1558 -19 745 167 0 0 chr11 77242392 77242643 -73540910 + FLAM_C SINE Alu 1 251 0 433 245 27 0 chr11 77242651 77242798 -73540755 + GA-rich Low_complexity Low_complexity 1 151 0 491 216 162 0 chr11 77242798 77242946 -73540607 + L1M4 LINE L1 5188 5359 -787 647 309 68 10 chr11 77243119 77243414 -73540139 + MLT1K LTR MaLR 167 478 -110 280 212 212 20 chr11 77243416 77243562 -73539991 + MLT1H LTR MaLR 1 174 -375 191 188 25 25 chr11 77244048 77244128 -73539425 + (CATA)n Simple_repeat Simple_repeat 3 82 0 2169 144 27 62 chr11 77244152 77244277 -73539276 + Tigger2a DNA MER2_type 1 129 -2579 2693 89 44 25 chr11 77244277 77244319 -73539234 - MLT2A1 LTR ERVL 0 444 404 315 0 0 0 chr11 77244319 77244354 -73539199 + (CA)n Simple_repeat Simple_repeat 2 36 0 2693 89 44 25 chr11 77244354 77244747 -73538806 - MLT2A1 LTR ERVL -40 404 1 2169 144 27 62 chr11 77244747 77245071 -73538482 + Tigger2a DNA MER2_type 129 434 0 237 344 92 32 chr11 77246781 77246999 -73536554 + MIR SINE MIR 20 250 -12 207 139 0 0 chr11 77247030 77247066 -73536487 + (CAT)n Simple_repeat Simple_repeat 3 38 0 235 191 63 32 chr11 77247244 77247307 -73536246 - MIR SINE MIR -84 124 60 729 129 22 22 chr11 77247652 77247830 -73535723 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 405 180 54 0 chr11 77247890 77248057 -73535496 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 441 207 29 6 chr11 77248093 77248267 -73535286 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 219 36 0 0 chr11 77248271 77248299 -73535254 + (TC)n Simple_repeat Simple_repeat 2 29 0 680 215 37 56 chr11 77249260 77249474 -73534079 + MIR SINE MIR 51 260 -2 747 245 76 21 chr11 77249504 77249741 -73533812 - MLT1J LTR MaLR -33 478 229 848 206 138 8 chr11 77249796 77250043 -73533510 - L1MB8 LINE L1 -57 6121 5843 518 270 53 37 chr11 77250064 77250253 -73533300 - MLT1J LTR MaLR -311 200 9 352 295 66 8 chr11 77250371 77250493 -73533060 - MIR SINE MIR -74 188 60 588 138 184 26 chr11 77250510 77250662 -73532891 - MER20 DNA MER1_type 0 219 44 417 285 0 0 chr11 77250683 77250998 -73532555 + (TGAG)n Simple_repeat Simple_repeat 1 315 0 436 270 3 10 chr11 77251074 77251447 -73532106 + (TGAG)n Simple_repeat Simple_repeat 1 370 0 396 285 0 0 chr11 77251461 77251640 -73531913 + (TGGG)n Simple_repeat Simple_repeat 2 180 0 259 281 0 0 chr11 77251641 77251705 -73531848 + (TGGA)n Simple_repeat Simple_repeat 1 64 0 426 276 0 0 chr11 77251705 77251879 -73531674 + (TGAG)n Simple_repeat Simple_repeat 1 174 0 222 255 0 0 chr11 77251889 77251936 -73531617 + (TGGG)n Simple_repeat Simple_repeat 2 48 0 536 240 6 0 chr11 77251937 77252116 -73531437 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 290 254 0 0 chr11 77252120 77252187 -73531366 + (TGAA)n Simple_repeat Simple_repeat 1 67 0 261 83 0 0 chr11 77254239 77254275 -73529278 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 35 0 0 0 chr11 77254376 77254411 -73529142 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr11 77254446 77254473 -73529080 + AT_rich Low_complexity Low_complexity 1 27 0 959 122 7 7 chr11 77254473 77254620 -73528933 - AluJb SINE Alu -30 282 136 197 238 139 82 chr11 77254707 77254829 -73528724 - MIR SINE MIR -114 148 20 2133 108 0 3 chr11 77255356 77255653 -73527900 + AluSq SINE Alu 1 296 -17 3208 32 0 0 chr11 77255931 77256302 -73527251 - L1PA4 LINE L1 -1 6154 5784 317 287 90 0 chr11 77257189 77257311 -73526242 - MER5A DNA MER1_type -34 155 23 187 237 0 0 chr11 77258301 77258339 -73525214 - MIR SINE MIR -59 149 112 294 225 42 0 chr11 77258748 77258819 -73524734 + MLT1H LTR MaLR 463 536 -13 240 170 0 38 chr11 77258957 77259010 -73524543 + (CAGGG)n Simple_repeat Simple_repeat 4 54 0 277 337 83 12 chr11 77261351 77261520 -73522033 - MIR SINE MIR -44 218 38 796 263 83 63 chr11 77261911 77262374 -73521179 - MLT1H LTR MaLR -32 517 1 266 307 99 0 chr11 77262519 77262620 -73520933 + L2 LINE L2 3158 3268 -4 2562 153 51 10 chr11 77263554 77263700 -73519853 - L1MA8 LINE L1 -110 6181 6036 552 313 47 42 chr11 77263700 77264084 -73519469 - L1MC1 LINE L1 -309 6024 5639 592 179 179 7 chr11 77264812 77264963 -73518590 + MER5A DNA MER1_type 13 189 0 341 341 40 6 chr11 77265085 77265211 -73518342 + (CAGAGA)n Simple_repeat Simple_repeat 2 137 -43 1634 207 59 46 chr11 77265211 77265602 -73517951 - MSTD LTR MaLR 0 396 1 341 341 40 6 chr11 77265602 77265648 -73517905 + (CAGAGA)n Simple_repeat Simple_repeat 137 180 0 198 236 0 0 chr11 77265659 77265714 -73517839 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 418 307 54 12 chr11 77266808 77266974 -73516579 - MIR SINE MIR 0 262 90 1983 138 95 6 chr11 77267311 77267658 -73515895 + MSTA LTR MaLR 1 378 -50 185 352 0 28 chr11 77267672 77267743 -73515810 - MIR SINE MIR -157 105 37 550 156 11 43 chr11 77267818 77268004 -73515549 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 367 273 145 17 chr11 77268828 77269000 -73514553 + MIR SINE MIR 44 237 -25 540 206 0 0 chr11 77269144 77269280 -73514273 + (TGGA)n Simple_repeat Simple_repeat 1 136 0 246 187 140 56 chr11 77269491 77269598 -73513955 - LTR16A LTR ERVL -32 418 303 304 278 188 0 chr11 77269623 77269756 -73513797 - LTR16A LTR ERVL -290 160 3 491 282 118 45 chr11 77269789 77270119 -73513434 - L1MC4 LINE L1 0 8042 7689 989 170 52 0 chr11 77270122 77270316 -73513237 - AluJo SINE Alu 0 312 109 422 216 8 0 chr11 77270497 77270622 -73512931 + (TGGA)n Simple_repeat Simple_repeat 4 129 0 380 339 69 11 chr11 77270899 77271073 -73512480 - HAL1 LINE L1 -826 1681 1498 300 203 51 13 chr11 77271140 77271219 -73512334 - MER53 DNA DNA -86 103 22 317 351 26 0 chr11 77271470 77271621 -73511932 + MIR SINE MIR 67 221 -41 1018 291 49 6 chr11 77271696 77272040 -73511513 + MLT1I LTR MaLR 51 409 0 282 246 0 14 chr11 77272470 77272539 -73511014 + G-rich Low_complexity Low_complexity 3 70 0 1911 153 0 7 chr11 77272687 77272995 -73510558 - AluJo SINE Alu -6 306 1 959 179 0 0 chr11 77273457 77273619 -73509934 + AluJb SINE Alu 137 298 -14 2164 121 0 3 chr11 77273619 77273933 -73509620 + AluSq SINE Alu 1 313 0 2081 126 3 3 chr11 77274502 77274811 -73508742 + AluSx SINE Alu 1 309 -3 314 307 101 67 chr11 77274838 77275196 -73508357 + L1ME LINE L1 5357 5726 -395 1242 143 211 12 chr11 77275607 77275858 -73507695 + AluJb SINE Alu 2 302 0 598 268 182 40 chr11 77278391 77279005 -73504548 + L2 LINE L2 2618 3309 -4 218 329 95 0 chr11 77280461 77280598 -73502955 + MIR SINE MIR 107 256 -6 558 29 0 0 chr11 77280672 77280740 -73502813 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 2135 109 0 3 chr11 77280747 77281040 -73502513 - AluSx SINE Alu -20 292 1 315 182 0 104 chr11 77281656 77281733 -73501820 + LTR16A1 LTR ERVL 91 159 -298 186 350 106 32 chr11 77281869 77282086 -73501467 + L2 LINE L2 1824 2056 -1258 384 309 67 20 chr11 77282097 77282246 -73501307 + MIR SINE MIR 28 183 -79 347 263 53 111 chr11 77282517 77282621 -73500932 + MIR SINE MIR 33 141 -121 1561 185 0 24 chr11 77282621 77282918 -73500635 - AluJo SINE Alu -22 290 1 347 263 53 111 chr11 77282918 77283056 -73500497 + MIR SINE MIR 141 261 -1 207 194 0 0 chr11 77283070 77283106 -73500447 + (CAT)n Simple_repeat Simple_repeat 3 38 0 775 177 0 17 chr11 77283107 77283288 -73500265 + (CACCAT)n Simple_repeat Simple_repeat 1 178 0 297 228 0 0 chr11 77283289 77283346 -73500207 + (CAT)n Simple_repeat Simple_repeat 3 59 0 845 307 77 34 chr11 77283987 77284021 -73499532 + L1ME1 LINE L1 5665 5696 -470 2413 84 0 0 chr11 77284021 77284332 -73499221 - AluY SINE Alu 0 311 1 845 307 77 34 chr11 77284332 77284769 -73498784 + L1ME1 LINE L1 5696 6161 -5 210 316 0 26 chr11 77285256 77285332 -73498221 + MIR SINE MIR 119 192 -70 450 195 11 0 chr11 77285352 77285439 -73498114 - MER74C LTR ERVL -257 203 116 613 229 81 31 chr11 77285473 77285696 -73497857 + MIR SINE MIR 17 250 -12 247 238 24 71 chr11 77285712 77285796 -73497757 + MIR3 SINE MIR 114 193 -15 536 275 57 53 chr11 77286113 77286360 -73497193 + LTR33 LTR ERVL 266 513 -8 724 301 94 15 chr11 77286532 77286937 -73496616 + MLT2B2 LTR ERVL 70 506 -9 351 312 70 27 chr11 77287626 77287812 -73495741 + MIR SINE MIR 11 204 -58 192 97 0 0 chr11 77288217 77288248 -73495305 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 2093 123 0 16 chr11 77288264 77288581 -73494972 - AluSx SINE Alu 0 312 1 218 340 85 0 chr11 77288907 77289001 -73494552 + MIR SINE MIR 89 190 -72 1716 215 29 8 chr11 77289023 77289405 -73494148 - MLT1B LTR MaLR 0 390 1 1096 277 113 13 chr11 77289996 77290465 -73493088 + MLT1F LTR MaLR 16 531 -11 1617 207 137 0 chr11 77290469 77290850 -73492703 + MLT1C LTR MaLR 1 433 -34 1587 204 0 0 chr11 77291006 77291314 -73492239 - AluJo SINE Alu -4 308 1 740 314 41 49 chr11 77292171 77292540 -73491013 - LTR16B LTR ERVL 0 464 99 231 300 0 0 chr11 77293152 77293212 -73490341 + MIR SINE MIR 77 136 -72 352 230 0 92 chr11 77293254 77293789 -73489764 + CT-rich Low_complexity Low_complexity 1 485 0 250 215 0 89 chr11 77293814 77293949 -73489604 + CT-rich Low_complexity Low_complexity 2 124 0 783 90 17 10 chr11 77294720 77294901 -73488652 - Charlie3 DNA MER1_type -8 2702 2445 724 227 152 59 chr11 77295056 77295430 -73488123 + MLT1C LTR MaLR 1 409 -58 2315 76 3 13 chr11 77295430 77295744 -73487809 - AluSx SINE Alu -1 311 1 378 366 47 13 chr11 77295813 77296045 -73487508 - MIR SINE MIR -15 247 8 636 172 223 0 chr11 77296595 77296752 -73486801 + L1MB3 LINE L1 5989 6180 -3 265 213 107 0 chr11 77297140 77297215 -73486338 + MER5A DNA MER1_type 81 163 -26 1993 131 0 3 chr11 77298124 77298414 -73485139 - AluSx SINE Alu -23 289 1 394 342 68 73 chr11 77298565 77299141 -73484412 - L1ME4a LINE L1 -1 6120 5548 1174 177 125 2 chr11 77299451 77299967 -73483586 - L1 LINE L1 -1380 4766 4174 747 240 0 0 chr11 77300077 77300591 -73482962 + (ATG)n Simple_repeat Simple_repeat 1 514 0 1934 159 0 28 chr11 77301123 77301443 -73482110 + AluJo SINE Alu 1 311 -1 943 175 59 31 chr11 77301883 77302301 -73481252 + MLT1D LTR MaLR 5 485 -20 629 289 97 26 chr11 77302345 77302656 -73480897 + MLT1K LTR MaLR 253 585 -3 292 277 59 20 chr11 77302829 77302930 -73480623 - L2 LINE L2 -4 3309 3205 2184 124 0 0 chr11 77302968 77303271 -73480282 - AluSq SINE Alu 0 303 1 21 0 0 0 chr11 77303274 77303295 -73480258 + AT_rich Low_complexity Low_complexity 1 21 0 609 206 71 0 chr11 77303521 77303676 -73479877 - MER20 DNA MER1_type -17 202 37 330 129 0 0 chr11 77304223 77304285 -73479268 + (GA)n Simple_repeat Simple_repeat 1 62 0 1022 165 6 6 chr11 77304378 77304691 -73478862 + (TGGA)n Simple_repeat Simple_repeat 2 314 0 709 133 15 0 chr11 77304793 77304928 -73478625 + (TGGA)n Simple_repeat Simple_repeat 1 137 0 191 322 178 11 chr11 77305850 77306024 -73477529 - MIR SINE MIR -25 237 35 766 286 68 68 chr11 77306072 77306530 -73477023 + MLT1H LTR MaLR 72 529 -20 702 239 63 0 chr11 77306681 77306840 -73476713 + MER58A DNA MER1_type 1 169 -55 546 70 0 0 chr11 77306840 77306911 -73476642 - MSTA LTR MaLR 0 428 358 2208 114 14 0 chr11 77306913 77307203 -73476350 + AluY SINE Alu 1 294 -17 1502 153 3 2 chr11 77307313 77307587 -73475966 + L1PA15 LINE L1 5884 6158 -10 2906 82 2 0 chr11 77307660 77308061 -73475492 + L1PA10 LINE L1 5763 6164 -4 189 316 0 0 chr11 77308250 77308307 -73475246 + L2 LINE L2 3256 3312 -1 24 0 0 0 chr11 77308630 77308654 -73474899 + AT_rich Low_complexity Low_complexity 1 24 0 612 193 0 0 chr11 77309590 77309704 -73473849 - FLAM_A SINE Alu -19 114 1 1762 185 0 20 chr11 77309946 77310248 -73473305 + AluJo SINE Alu 1 296 -16 2156 119 0 41 chr11 77310252 77310570 -73472983 + AluSx SINE Alu 1 305 -7 1562 282 85 51 chr11 77311085 77311938 -73471615 - L1ME3 LINE L1 -11 6151 5244 407 171 53 0 chr11 77311938 77312014 -73471539 - MADE1 DNA Mariner 0 80 1 1562 282 85 51 chr11 77312014 77312344 -73471209 - L1ME3 LINE L1 -918 5244 4927 725 248 51 17 chr11 77312472 77312767 -73470786 - L1ME3 LINE L1 -1614 4532 4228 2400 204 67 14 chr11 77312784 77313303 -73470250 - MER68 LTR ERV1 -15 547 1 552 248 227 14 chr11 77313322 77313608 -73469945 - L1 LINE L1 -1946 4200 3854 423 244 76 56 chr11 77313619 77313816 -73469737 - L1MC4a LINE L1 -1982 5826 5626 815 274 208 8 chr11 77314470 77314970 -73468583 - L2 LINE L2 -518 2796 2197 4572 155 150 23 chr11 77315424 77316074 -73467479 - LTR28 LTR ERV1 0 1020 221 2474 80 0 0 chr11 77316074 77316374 -73467179 + AluSx SINE Alu 1 300 -12 4572 155 150 23 chr11 77316374 77316628 -73466925 - LTR28 LTR ERV1 -799 221 1 2042 138 0 14 chr11 77317029 77317326 -73466227 - AluJb SINE Alu -18 294 2 235 306 8 3 chr11 77317505 77317618 -73465935 - L1MC4a LINE L1 -856 5435 5354 1354 154 44 27 chr11 77317623 77317921 -73465632 - L1MA7 LINE L1 -3 6288 5986 231 276 40 26 chr11 77317921 77317997 -73465556 + MIR SINE MIR 52 128 -134 445 258 73 0 chr11 77318747 77318898 -73464655 - MIR SINE MIR -79 183 22 308 164 0 55 chr11 77319579 77319652 -73463901 - LTR41 LTR ERVL -11 762 694 242 298 170 0 chr11 77320017 77320158 -73463395 - LTR41 LTR ERVL -607 166 2 223 72 0 0 chr11 77320442 77320473 -73463080 - MIR SINE MIR -60 148 104 264 264 293 0 chr11 77321072 77321212 -73462341 + MIR SINE MIR 13 193 -69 1470 191 78 60 chr11 77321338 77321571 -73461982 + MLT2D LTR ERVL 1 245 -169 2439 88 0 0 chr11 77321571 77321865 -73461688 + AluSg SINE Alu 1 294 -16 1470 191 78 60 chr11 77321865 77322030 -73461523 + MLT2D LTR ERVL 245 406 -8 210 208 0 0 chr11 77325205 77325258 -73458295 + (TGGA)n Simple_repeat Simple_repeat 3 55 0 314 231 11 0 chr11 77325497 77325588 -73457965 + (TGGG)n Simple_repeat Simple_repeat 2 93 0 479 228 18 6 chr11 77325619 77325790 -73457763 + (TGGG)n Simple_repeat Simple_repeat 3 175 0 183 156 0 0 chr11 77325897 77325929 -73457624 + (TGGG)n Simple_repeat Simple_repeat 2 33 0 502 212 11 22 chr11 77325966 77326145 -73457408 + (TGGG)n Simple_repeat Simple_repeat 3 179 0 349 231 8 8 chr11 77326177 77326294 -73457259 + (TGGG)n Simple_repeat Simple_repeat 2 118 0 21 0 0 0 chr11 77328173 77328194 -73455359 + AT_rich Low_complexity Low_complexity 1 21 0 1038 171 0 0 chr11 77328199 77328351 -73455202 - FRAM SINE Alu -27 149 1 1349 261 42 14 chr11 77328351 77328776 -73454777 - L1MB5 LINE L1 -34 6140 5704 585 299 121 36 chr11 77330660 77331191 -73452362 + L2 LINE L2 2599 3292 -21 475 285 77 26 chr11 77331304 77331792 -73451761 + HAL1 LINE L1 1396 2032 -475 180 0 0 0 chr11 77332042 77332062 -73451491 + (A)n Simple_repeat Simple_repeat 1 20 0 1837 127 130 3 chr11 77332068 77332398 -73451155 - MSTA LTR MaLR -56 372 1 295 225 0 14 chr11 77332398 77332458 -73451095 + MER58 DNA MER1_type 2361 2419 -1 664 219 67 2 chr11 77332487 77332661 -73450892 + MER5A DNA MER1_type 1 171 -7 377 267 56 0 chr11 77333012 77333102 -73450451 - MER81 DNA DNA -5 109 15 1609 180 68 4 chr11 77333733 77334011 -73449542 - AluJb SINE Alu -16 296 1 1632 174 3 39 chr11 77334011 77334316 -73449237 - AluJo SINE Alu -18 294 1 330 273 67 20 chr11 77334490 77334640 -73448913 - L1ME3A LINE L1 -218 5952 5796 985 216 27 18 chr11 77335482 77335704 -73447849 + MER58A DNA MER1_type 1 224 0 194 333 0 0 chr11 77335783 77335840 -73447713 - L2 LINE L2 -1 3312 3256 402 232 0 85 chr11 77336041 77336205 -73447348 + HAL1 LINE L1 2014 2163 -344 301 306 53 29 chr11 77336227 77336433 -73447120 + HAL1 LINE L1 2293 2503 -4 1000 81 0 22 chr11 77338262 77338398 -73445155 + AluSq/x SINE Alu 19 151 -161 2001 124 4 0 chr11 77338629 77338928 -73444625 - AluSq SINE Alu 0 308 9 25 0 0 0 chr11 77338937 77338962 -73444591 + AT_rich Low_complexity Low_complexity 1 25 0 1917 147 54 23 chr11 77339875 77340229 -73443324 + MLT1A1 LTR MaLR 1 365 0 219 69 0 0 chr11 77340352 77340381 -73443172 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 1061 207 96 63 chr11 77341957 77342353 -73441200 - MLT1C LTR MaLR 0 467 59 318 227 62 31 chr11 77342687 77342784 -73440769 - MER5B DNA MER1_type 0 178 79 650 260 125 12 chr11 77344293 77344712 -73438841 - MLT1D LTR MaLR -4 501 1 1373 167 0 17 chr11 77344762 77344995 -73438558 - AluJo SINE Alu 0 312 84 1012 149 87 62 chr11 77345782 77345840 -73437713 - MSTA LTR MaLR -180 248 193 2439 107 0 0 chr11 77345840 77346150 -73437403 - AluSg SINE Alu 0 310 1 1012 149 87 62 chr11 77346150 77346332 -73437221 - MSTA LTR MaLR -235 193 2 3435 131 21 35 chr11 77346462 77347081 -73436472 + MER4B LTR ERV1 1 610 0 1826 143 28 35 chr11 77348646 77348988 -73434565 - MER51B LTR ERV1 0 377 50 2708 49 0 3 chr11 77349009 77349317 -73434236 + AluY SINE Alu 1 307 -4 634 126 0 0 chr11 77349454 77349549 -73434004 - FLAM_C SINE Alu -32 111 17 1499 161 66 9 chr11 77349676 77350158 -73433395 - LTR24B LTR ERV1 -6 570 36 188 0 74 0 chr11 77350158 77350185 -73433368 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1172 240 123 13 chr11 77350299 77350761 -73432792 - L1MC4 LINE L1 -699 7343 6831 5298 142 29 30 chr11 77350947 77351869 -73431684 + MER49 LTR ERV1 3 923 0 239 308 67 10 chr11 77351996 77352100 -73431453 + L1MC/D LINE L1 5534 5643 -2165 376 105 211 13 chr11 77352638 77352714 -73430839 - MER51A LTR ERV1 -543 91 1 1962 147 82 14 chr11 77352718 77353072 -73430481 - MER83B LTR ERV1 0 378 1 713 194 150 6 chr11 77353260 77353440 -73430113 - MER20 DNA MER1_type -7 212 7 836 308 129 34 chr11 77353454 77353951 -73429602 - L1M4 LINE L1 -1712 4434 3891 474 317 116 29 chr11 77355035 77355987 -73427566 + L1MEd LINE L1 845 1916 -4647 386 325 59 42 chr11 77356212 77356449 -73427104 + L1MEd LINE L1 2177 2417 -3967 515 344 72 20 chr11 77356449 77356908 -73426645 + L1M4 LINE L1 4211 4693 -1453 719 151 0 89 chr11 77356921 77357067 -73426486 + FLAM_C SINE Alu 1 133 0 2438 145 86 5 chr11 77357105 77357547 -73426006 - MER9 LTR ERVK 0 511 34 793 210 0 0 chr11 77357554 77357692 -73425861 + AluJb SINE Alu 166 303 -9 2130 134 53 34 chr11 77357694 77358051 -73425502 - THE1B LTR MaLR 0 364 1 270 86 0 0 chr11 77358063 77358098 -73425455 + MER9 LTR ERVK 205 239 -272 341 347 53 29 chr11 77358308 77358688 -73424865 - HAL1b LINE L1 -925 423 35 984 264 47 20 chr11 77362541 77362882 -73420671 - LTR53 LTR ERVL 0 519 170 1840 131 17 14 chr11 77363462 77363759 -73419794 - AluSx SINE Alu -14 298 1 419 265 111 47 chr11 77365551 77365785 -73417768 - MLT1L LTR MaLR -157 458 210 1717 150 0 53 chr11 77366841 77367141 -73416412 - AluJo SINE Alu -28 284 1 1046 205 129 23 chr11 77367142 77367444 -73416109 - L1MB8 LINE L1 0 6178 5845 527 290 35 18 chr11 77367460 77367629 -73415924 + MER8 DNA MER2_type 8 179 -60 228 333 0 0 chr11 77367604 77367661 -73415892 + MER2 DNA MER2_type 282 338 -7 * 1320 256 30 30 chr11 77367666 77367897 -73415656 - L1MB8 LINE L1 -354 5830 5597 1984 133 0 31 chr11 77367897 77368220 -73415333 - AluSq SINE Alu 0 313 1 1320 256 30 30 chr11 77368220 77368417 -73415136 - L1MB8 LINE L1 -586 5598 5402 575 327 5 28 chr11 77368765 77368982 -73414571 + MIR SINE MIR 16 227 -35 451 212 91 23 chr11 77370922 77371054 -73412499 - L1MB5 LINE L1 -278 5896 5756 1537 254 17 67 chr11 77371471 77372036 -73411517 + L1MB7 LINE L1 5597 6134 -50 366 363 0 0 chr11 77372532 77372858 -73410695 + (TG)n Simple_repeat Simple_repeat 1 326 0 798 221 0 2 chr11 77374105 77374523 -73409030 + (TCCA)n Simple_repeat Simple_repeat 1 417 0 663 75 0 0 chr11 77374648 77374742 -73408811 - AluJ/FRAM SINE Alu 0 312 219 456 291 154 4 chr11 77374760 77374994 -73408559 - L1ME2 LINE L1 -37 6127 5859 1067 135 5 21 chr11 77375014 77375207 -73408346 - AluJb SINE Alu -1 311 122 1135 280 84 24 chr11 77375216 77375727 -73407826 - L1ME2 LINE L1 -359 5805 5264 221 182 18 0 chr11 77375760 77375815 -73407738 + (TA)n Simple_repeat Simple_repeat 2 57 0 3887 203 24 49 chr11 77375830 77376810 -73406743 - LTR5 LTR ERVK -14 955 1 180 111 67 0 chr11 77376810 77376855 -73406698 + (TA)n Simple_repeat Simple_repeat 1 48 0 875 280 80 54 chr11 77376892 77377148 -73406405 - L1ME2 LINE L1 -968 5178 4930 2092 116 0 0 chr11 77377148 77377450 -73406103 + AluSx SINE Alu 1 302 -10 1939 125 11 0 chr11 77377450 77377737 -73405816 + AluSp SINE Alu 11 300 -13 875 280 80 54 chr11 77377737 77378032 -73405521 - L1ME2 LINE L1 -1215 4931 4612 387 237 0 52 chr11 77378071 77378168 -73405385 - MLT2B1 LTR ERVL -46 474 383 832 185 0 0 chr11 77378361 77378496 -73405057 + FLAM_A SINE Alu 8 142 0 919 174 24 12 chr11 77378556 77378747 -73404806 - AluJb SINE Alu 0 305 113 810 181 0 7 chr11 77378783 77378927 -73404626 - AluJo SINE Alu -169 143 1 2027 119 0 0 chr11 77379541 77379861 -73403692 - AluSc SINE Alu 0 309 1 2558 58 0 0 chr11 77380496 77380807 -73402746 - AluY SINE Alu 0 311 1 2053 65 0 4 chr11 77381287 77381549 -73402004 + AluY SINE Alu 37 297 -14 533 184 82 53 chr11 77381847 77381978 -73401575 - MER21B LTR ERV1 -99 832 623 1436 109 9 23 chr11 77381978 77382199 -73401354 + THE1B LTR MaLR 1 218 -146 416 193 0 0 chr11 77382299 77382382 -73401171 + AluS SINE Alu 228 310 0 1102 147 102 0 chr11 77383173 77383370 -73400183 - AluJb SINE Alu -15 297 81 194 279 35 12 chr11 77383676 77383762 -73399791 - L2 LINE L2 -1631 1683 1596 317 192 41 0 chr11 77384216 77384289 -73399264 - Charlie2 DNA MER1_type -2557 305 230 1623 234 45 11 chr11 77384514 77384983 -73398570 - MLT1D LTR MaLR -20 485 1 21 0 0 0 chr11 77385008 77385029 -73398524 + GC_rich Low_complexity Low_complexity 1 21 0 440 257 59 33 chr11 77385913 77386065 -73397488 + MER20 DNA MER1_type 17 172 -47 2546 237 90 33 chr11 77386827 77387408 -73396145 - L1M4 LINE L1 -1026 5120 4471 1917 131 0 23 chr11 77387408 77387714 -73395839 - AluSx SINE Alu -13 299 1 2546 237 90 33 chr11 77387714 77388008 -73395545 - L1M4 LINE L1 -1675 4471 4195 621 139 76 35 chr11 77388018 77388162 -73395391 + Tigger3(Golem) DNA MER2_type 2286 2435 -594 516 183 10 0 chr11 77388186 77388290 -73395263 - L1M4 LINE L1 -1070 5076 4972 252 125 88 12 chr11 77388290 77388370 -73395183 + Tigger3(Golem) DNA MER2_type 2436 2521 -508 933 83 8 23 chr11 77388370 77388503 -73395050 + AluSq/x SINE Alu 1 131 -181 2730 178 33 4 chr11 77388516 77389034 -73394519 + Tigger3(Golem) DNA MER2_type 2497 3029 0 2077 72 3 31 chr11 77389055 77389375 -73394178 - AluSp SINE Alu 0 312 1 2805 234 41 8 chr11 77389381 77390168 -73393385 - L1M4 LINE L1 -2814 3332 2520 196 349 12 0 chr11 77390245 77390328 -73393225 - L2 LINE L2 -53 3219 3136 829 221 66 114 chr11 77390663 77390792 -73392761 - MLT1C LTR MaLR -9 458 324 2192 145 3 6 chr11 77390792 77391130 -73392423 - MER1B DNA MER1_type 0 337 1 829 221 66 114 chr11 77391130 77391384 -73392169 - MLT1C LTR MaLR -143 324 90 1800 172 3 10 chr11 77391384 77391698 -73391855 - AluJb SINE Alu 0 312 1 829 221 66 114 chr11 77391698 77391771 -73391782 - MLT1C LTR MaLR -377 90 15 3239 202 66 7 chr11 77393214 77393911 -73389642 - L1MA8 LINE L1 -2 6289 5552 1727 153 40 10 chr11 77394286 77394587 -73388966 + AluJb SINE Alu 1 310 -2 725 237 13 69 chr11 77394876 77395108 -73388445 + MER20 DNA MER1_type 1 219 0 294 243 29 0 chr11 77399246 77399316 -73384237 - MER58 DNA MER1_type -89 252 181 985 156 138 39 chr11 77399413 77399695 -73383858 - Charlie1 DNA MER1_type 0 2761 2452 982 217 103 15 chr11 77399691 77399954 -73383599 - Charlie1 DNA MER1_type -1397 1364 1079 * 2797 88 98 5 chr11 77400029 77400439 -73383114 + LTR7 LTR ERV1 1 448 -2 2930 143 7 7 chr11 77401096 77401544 -73382009 + MER83 LTR ERV1 1 448 0 339 282 74 108 chr11 77401618 77402008 -73381545 + L1MEc LINE L1 36 412 -5984 3058 255 61 28 chr11 77402421 77403681 -73379872 + L1M4 LINE L1 3033 4334 -1812 * 4341 149 24 23 chr11 77403675 77404543 -73379010 + L1MA7 LINE L1 5226 6092 -199 343 320 35 25 chr11 77404782 77404982 -73378571 - L1MEd LINE L1 -5604 515 314 43166 34 3 3 chr11 77405573 77411724 -73371829 + L1PA4 LINE L1 9 6155 0 1062 236 25 36 chr11 77411715 77412075 -73371478 + L1MA9 LINE L1 5473 5828 -484 * 2425 89 7 0 chr11 77412076 77412369 -73371184 + AluSx SINE Alu 1 295 -17 276 149 0 0 chr11 77412440 77412487 -73371066 + (CATA)n Simple_repeat Simple_repeat 2 48 0 228 67 0 0 chr11 77413273 77413303 -73370250 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 655 291 27 19 chr11 77413969 77414289 -73369264 - MLT1I LTR MaLR -4 405 53 440 161 55 47 chr11 77414419 77414579 -73368974 - L1MC5 LINE L1 -758 7203 2896 1823 137 4 0 chr11 77414864 77415120 -73368433 - AluSq SINE Alu -11 302 46 1178 105 7 0 chr11 77415126 77415278 -73368275 - AluSx SINE Alu -159 153 1 508 278 98 36 chr11 77415278 77415584 -73367969 - L1MC4a LINE L1 -942 6866 6542 2154 120 7 0 chr11 77415826 77416118 -73367435 - AluSx SINE Alu -18 294 1 222 350 0 17 chr11 77417064 77417244 -73366309 + (CAG)n Simple_repeat Simple_repeat 2 178 0 2014 159 78 3 chr11 77417992 77418376 -73365177 - MSTB LTR MaLR -13 413 1 8349 189 23 9 chr11 77418380 77420003 -73363550 - MSTB-int LTR MaLR -5 1646 1 1864 145 119 49 chr11 77420008 77420236 -73363317 - MSTB LTR MaLR -12 414 147 2291 110 3 0 chr11 77420236 77420528 -73363025 - AluSp SINE Alu -20 293 1 1864 145 119 49 chr11 77420528 77420686 -73362867 - MSTB LTR MaLR -279 147 1 1709 213 0 0 chr11 77420697 77420988 -73362565 - AluJo SINE Alu -19 293 3 1319 194 153 53 chr11 77421216 77421576 -73361977 + MSTD LTR MaLR 1 396 0 203 192 0 19 chr11 77423781 77423833 -73359720 + A-rich Low_complexity Low_complexity 2 52 0 1082 201 8 64 chr11 77423885 77424134 -73359419 + AluJb SINE Alu 1 235 -77 401 310 310 3 chr11 77424403 77424706 -73358847 + L2 LINE L2 605 1000 -2314 748 206 37 16 chr11 77424712 77424901 -73358652 - L1MB8 LINE L1 0 6178 5986 205 161 113 97 chr11 77425010 77425072 -73358481 + MIR SINE MIR 58 120 -142 30 27 0 0 chr11 77425563 77425600 -73357953 + GC_rich Low_complexity Low_complexity 1 37 0 306 0 0 0 chr11 77425621 77425655 -73357898 + (A)n Simple_repeat Simple_repeat 1 34 0 2288 107 0 0 chr11 77425661 77425950 -73357603 + AluSx SINE Alu 3 291 -21 24 0 0 0 chr11 77426384 77426408 -73357145 + AT_rich Low_complexity Low_complexity 1 24 0 1281 206 86 19 chr11 77428102 77428461 -73355092 - MLT1B LTR MaLR 0 390 8 324 241 36 44 chr11 77428666 77428803 -73354750 - MLT1A2 LTR MaLR 0 374 239 1449 114 5 0 chr11 77429057 77429258 -73354295 + AluSg/x SINE Alu 95 296 -14 1188 209 85 36 chr11 77429569 77429687 -73353866 - MER21B LTR ERV1 -109 754 643 2508 117 28 14 chr11 77429687 77430046 -73353507 + THE1B LTR MaLR 1 364 0 1188 209 85 36 chr11 77430046 77430110 -73353443 - MER21B LTR ERV1 -220 643 584 2929 189 65 41 chr11 77430110 77430792 -73352761 - LTR34 LTR ERV1 0 699 2 1188 209 85 36 chr11 77430792 77430938 -73352615 - MER21B LTR ERV1 -279 584 409 316 230 80 0 chr11 77431076 77431176 -73352377 - MER21B LTR ERV1 -658 205 98 243 266 0 16 chr11 77431260 77431324 -73352229 - MER21B LTR ERV1 -778 85 23 2213 123 3 0 chr11 77431476 77431769 -73351784 + AluSg SINE Alu 1 294 -16 4608 85 93 8 chr11 77432169 77432806 -73350747 - LTR8 LTR ERV1 0 691 1 314 110 0 110 chr11 77432873 77432946 -73350607 + MER72 LTR ERV1 1 65 -657 2516 127 30 36 chr11 77432947 77433135 -73350418 - MER4E LTR ERV1 0 766 578 4604 119 47 39 chr11 77433135 77433908 -73349645 + MER4E LTR ERV1 1 779 0 2516 127 30 36 chr11 77433908 77434315 -73349238 - MER4E LTR ERV1 -188 578 2 899 268 43 1 chr11 77434316 77434679 -73348874 + MER72 LTR ERV1 72 486 -236 726 145 21 69 chr11 77434681 77434826 -73348727 - LTR12 LTR ERV1 -236 478 341 287 237 26 0 chr11 77434832 77434908 -73348645 - LTR30 LTR ERV1 -121 601 524 616 196 162 35 chr11 77434908 77435137 -73348416 - LTR12 LTR ERV1 -456 258 1 1151 192 12 4 chr11 77435137 77435377 -73348176 + MER72 LTR ERV1 481 722 0 370 203 268 34 chr11 77435759 77435993 -73347560 + MLT1H1 LTR MaLR 1 288 -297 195 270 32 16 chr11 77436341 77436404 -73347149 - L2 LINE L2 -519 2795 2732 233 366 35 7 chr11 77436995 77437137 -73346416 - MIR SINE MIR -58 204 59 184 89 22 44 chr11 77438568 77438613 -73344940 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 4187 231 64 23 chr11 77439005 77439274 -73344279 + L1M4 LINE L1 3969 4226 -1952 315 0 0 0 chr11 77439274 77439309 -73344244 + (CA)n Simple_repeat Simple_repeat 2 36 0 4187 231 64 23 chr11 77439309 77440484 -73343069 + L1M4 LINE L1 4226 5466 -712 911 189 23 11 chr11 77442410 77442623 -73340930 + FRAM SINE Alu 1 214 0 959 246 50 27 chr11 77442988 77443248 -73340305 + AluJo SINE Alu 1 266 -46 731 208 101 140 chr11 77444234 77444749 -73338804 + LTR42 LTR ERVL 1 495 0 480 324 0 0 chr11 77445078 77445254 -73338299 + (TG)n Simple_repeat Simple_repeat 1 176 0 330 244 0 0 chr11 77445313 77445485 -73338068 + (TG)n Simple_repeat Simple_repeat 2 173 0 485 180 11 0 chr11 77446219 77446308 -73337245 + L1MC1 LINE L1 6243 6332 -1 420 320 11 34 chr11 77446391 77446569 -73336984 - L3 LINE CR1 -609 968 795 373 289 16 8 chr11 77447459 77447580 -73335973 - MER58B DNA MER1_type 0 341 220 254 182 0 65 chr11 77447608 77447685 -73335868 + L1MA10 LINE L1 6263 6334 0 433 366 81 34 chr11 77448245 77448663 -73334890 + ERVL LTR ERVL 1737 2174 -2822 399 21 0 0 chr11 77448691 77448739 -73334814 + (CA)n Simple_repeat Simple_repeat 2 49 0 843 323 50 22 chr11 77448808 77449374 -73334179 + ERVL LTR ERVL 2341 2929 -2725 936 302 83 18 chr11 77449462 77449909 -73333644 + ERVL LTR ERVL 3052 3527 -2127 626 244 72 16 chr11 77450581 77450774 -73332779 + MER69 DNA AcHobo 371 574 -652 416 246 71 27 chr11 77450754 77450937 -73332616 + MER69 DNA AcHobo 1999 2189 -337 * 379 246 4 4 chr11 77452039 77452307 -73331246 + (CA)n Simple_repeat Simple_repeat 1 268 0 213 230 0 0 chr11 77452370 77452444 -73331109 + (CA)n Simple_repeat Simple_repeat 1 74 0 693 231 91 132 chr11 77452795 77453311 -73330242 - LTR42 LTR ERVL 0 495 1 280 325 0 0 chr11 77454195 77454352 -73329201 + (CAG)n Simple_repeat Simple_repeat 1 157 0 1226 216 51 12 chr11 77454420 77454675 -73328878 - AluJb SINE Alu -47 265 1 869 198 0 12 chr11 77455031 77455193 -73328360 - FRAM SINE Alu -16 160 1 266 345 0 0 chr11 77456907 77457078 -73326475 + (CAG)n Simple_repeat Simple_repeat 1 171 0 1937 147 147 11 chr11 77457952 77458327 -73325226 - MSTB LTR MaLR 0 426 1 2014 171 0 0 chr11 77458337 77458646 -73324907 - AluJo SINE Alu -3 309 1 509 185 19 23 chr11 77458874 77459010 -73324543 + MSTD LTR MaLR 1 131 -243 2282 155 70 5 chr11 77460997 77461397 -73322156 - MSTB LTR MaLR 0 426 1 2905 172 49 5 chr11 77461402 77461953 -73321600 - MSTB-int LTR MaLR -5 1646 1072 233 318 159 5 chr11 77461972 77462173 -73321380 + L2 LINE L2 769 1000 -2314 692 152 14 7 chr11 77462180 77462318 -73321235 - L1MB8 LINE L1 0 6178 6040 368 253 11 0 chr11 77462350 77462437 -73321116 + MER70A LTR ERVL 3 90 -382 2855 163 45 32 chr11 77462441 77463042 -73320511 + L1MA5 LINE L1 5342 5950 -350 263 157 0 0 chr11 77463037 77463088 -73320465 + L1MA5 LINE L1 6244 6294 -6 * 1706 199 64 0 chr11 77463106 77463463 -73320090 + MER70A LTR ERVL 68 447 -25 3037 203 41 27 chr11 77463472 77463959 -73319594 - L1MB8 LINE L1 -191 5987 5508 1459 222 10 3 chr11 77463959 77464265 -73319288 - AluJo SINE Alu 0 312 5 3037 203 41 27 chr11 77464265 77464482 -73319071 - L1MB8 LINE L1 -670 5508 5295 5449 130 48 3 chr11 77464482 77465032 -73318521 + L1PA16 LINE L1 4934 5458 -708 198 118 0 0 chr11 77465032 77465066 -73318487 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5449 130 48 3 chr11 77465066 77465708 -73317845 + L1PA16 LINE L1 5458 6162 -4 3037 203 41 27 chr11 77465708 77466269 -73317284 - L1MB8 LINE L1 -883 5295 4699 2408 97 3 0 chr11 77466269 77466579 -73316974 - AluY SINE Alu 0 311 1 3037 203 41 27 chr11 77466579 77466762 -73316791 - L1MB8 LINE L1 -1479 4699 4520 1030 206 5 0 chr11 77466762 77466961 -73316592 - MLT1B LTR MaLR -3 387 188 339 136 0 0 chr11 77466961 77467020 -73316533 + (GA)n Simple_repeat Simple_repeat 1 59 0 463 295 54 12 chr11 77467026 77467192 -73316361 - MLT1B LTR MaLR -201 173 1 453 191 64 0 chr11 77467240 77467334 -73316219 - L1MB8 LINE L1 -1782 4364 4265 1828 162 21 10 chr11 77467350 77467640 -73315913 + AluSx SINE Alu 1 293 -19 2714 119 46 23 chr11 77467795 77468233 -73315320 + MER83 LTR ERV1 1 448 0 279 326 69 0 chr11 77468233 77468377 -73315176 + L1MC/D LINE L1 5445 5598 -2210 1867 254 9 21 chr11 77469049 77469569 -73313984 - L1MA9 LINE L1 -38 6274 5758 455 316 71 0 chr11 77469571 77469783 -73313770 + L1MA9 LINE L1 5933 6159 -153 427 179 0 58 chr11 77469786 77469976 -73313577 + (CA)n Simple_repeat Simple_repeat 2 180 0 348 223 83 25 chr11 77469976 77470097 -73313456 + L1MA9 LINE L1 6147 6274 -38 296 252 85 73 chr11 77470777 77471023 -73312530 + SN5 Other centromeric 1 249 -206 354 91 0 0 chr11 77471320 77471375 -73312178 + L1MC1 LINE L1 6276 6330 -3 375 343 25 45 chr11 77471393 77471638 -73311915 - L3 LINE CR1 -535 1042 803 2800 3 0 0 chr11 77471674 77471968 -73311585 + AluYa5 SINE Alu 1 294 -17 21 57 0 0 chr11 77472518 77472553 -73311000 + AT_rich Low_complexity Low_complexity 1 35 0 1916 126 4 4 chr11 77472562 77472824 -73310729 + AluSx SINE Alu 3 264 -48 301 230 109 23 chr11 77473053 77473227 -73310326 - HAL1b LINE L1 -415 933 745 458 307 48 12 chr11 77473228 77473479 -73310074 - HAL1b LINE L1 -651 697 438 976 113 0 0 chr11 77473599 77473732 -73309821 - AluSp SINE Alu -180 133 1 317 245 105 35 chr11 77473737 77473880 -73309673 - HsTC2 DNA Tc2 -118 1780 1628 1185 220 2 83 chr11 77473918 77474101 -73309452 + L1MA4 LINE L1 5767 5902 -398 1601 182 0 4 chr11 77474101 77474381 -73309172 + AluSx SINE Alu 1 279 -33 1185 220 2 83 chr11 77474381 77474593 -73308960 + L1MA4 LINE L1 5902 6130 -170 2143 118 16 3 chr11 77474672 77474976 -73308577 - AluSp SINE Alu -5 308 1 1847 252 28 8 chr11 77475021 77476016 -73307537 + L1MB3 LINE L1 4818 5832 -351 798 142 0 64 chr11 77476017 77476158 -73307395 + AluSq/x SINE Alu 4 135 -178 219 125 0 0 chr11 77476390 77476430 -73307123 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 926 211 32 50 chr11 77476518 77476546 -73307007 + L1MB3 LINE L1 5879 5906 -277 2030 143 0 0 chr11 77476546 77476839 -73306714 + AluSx SINE Alu 3 295 -17 926 211 32 50 chr11 77476839 77477090 -73306463 + L1MB3 LINE L1 5906 6153 -30 24 0 0 0 chr11 77477117 77477141 -73306412 + AT_rich Low_complexity Low_complexity 1 24 0 2998 218 19 78 chr11 77477600 77478629 -73304924 + LTR5 LTR ERVK 1 969 0 373 322 70 37 chr11 77478953 77479167 -73304386 - MIR SINE MIR -10 252 32 2119 106 6 47 chr11 77479561 77479882 -73303671 + AluSg SINE Alu 1 308 -2 284 255 20 10 chr11 77481003 77481101 -73302452 + L1M4 LINE L1 4624 4722 -1424 288 77 0 0 chr11 77481106 77481145 -73302408 + (TA)n Simple_repeat Simple_repeat 2 40 0 348 257 73 59 chr11 77481147 77481450 -73302103 - L1M4 LINE L1 -3189 2957 2651 246 269 214 66 chr11 77481528 77481710 -73301843 - MLT1J2 LTR MaLR -2 448 240 444 150 102 47 chr11 77481783 77481910 -73301643 - MLT1J1 LTR MaLR -312 134 1 350 315 31 8 chr11 77481918 77482048 -73301505 - L1M4 LINE L1 -3594 2552 2420 238 324 83 41 chr11 77482124 77482269 -73301284 - MIR3 SINE MIR -54 154 4 4724 128 298 81 chr11 77482321 77483715 -73299838 - pTR5 LTR ERV1 0 2438 743 180 0 0 0 chr11 77484739 77484759 -73298794 + (TTG)n Simple_repeat Simple_repeat 2 21 0 257 287 287 14 chr11 77485009 77485298 -73298255 + L2 LINE L2 2243 2610 -704 644 180 8 16 chr11 77485399 77485527 -73298026 - SATR1 Satellite Satellite -153 317 191 21 36 0 0 chr11 77485610 77485638 -73297915 + AT_rich Low_complexity Low_complexity 1 28 0 27281 98 15 13 chr11 77485874 77489924 -73293629 + HERVE LTR ERV1 1108 5165 -2648 1975 180 117 10 chr11 77489924 77491394 -73292159 - SATR1 Satellite Satellite 0 1626 1 1794 215 74 73 chr11 77491424 77492293 -73291260 - SATR1 Satellite Satellite 0 869 1 1119 193 218 44 chr11 77492331 77493120 -73290433 - SATR1 Satellite Satellite -1 926 1 852 221 278 3 chr11 77493148 77493479 -73290074 - SATR1 Satellite Satellite -1 469 48 1437 108 42 5 chr11 77493483 77493697 -73289856 - AluSq SINE Alu -91 222 1 713 228 46 0 chr11 77495598 77495795 -73287758 + MER6B DNA MER2_type 5 210 0 382 216 34 0 chr11 77495900 77495988 -73287565 - MER5B DNA MER1_type -6 172 82 1326 226 123 35 chr11 77496430 77497209 -73286344 - SATR1 Satellite Satellite -4 847 1 21 100 0 0 chr11 77497255 77497325 -73286228 + AT_rich Low_complexity Low_complexity 1 70 0 213 189 11 53 chr11 77497407 77497502 -73286051 + (TTA)n Simple_repeat Simple_repeat 1 91 0 25621 98 12 12 chr11 77497554 77501333 -73282220 + HERVE LTR ERV1 1108 4886 -2927 664 221 30 91 chr11 77501571 77501802 -73281751 - MER20 DNA MER1_type -2 217 1 440 310 54 22 chr11 77501831 77502015 -73281538 + MIR SINE MIR 41 230 -32 2292 118 0 0 chr11 77502018 77502323 -73281230 - AluSx SINE Alu -7 305 1 251 373 25 0 chr11 77503502 77503663 -73279890 - L2 LINE L2 -1026 2288 2124 1467 126 43 0 chr11 77503663 77503870 -73279683 - AluSx SINE Alu -96 216 1 25 31 0 0 chr11 77503870 77503902 -73279651 + AT_rich Low_complexity Low_complexity 1 32 0 2071 129 7 14 chr11 77504100 77504395 -73279158 + AluSx SINE Alu 3 295 -17 30 59 0 0 chr11 77504395 77504446 -73279107 + AT_rich Low_complexity Low_complexity 1 51 0 2678 120 60 34 chr11 77504470 77504794 -73278759 - L1MA8 LINE L1 -3 6288 5945 1831 183 6 3 chr11 77504794 77505105 -73278448 - AluJo SINE Alu 0 312 1 2678 120 60 34 chr11 77505105 77505281 -73278272 - L1MA8 LINE L1 -346 5945 5775 877 196 52 10 chr11 77505688 77505882 -73277671 + MER58A DNA MER1_type 9 210 -14 1898 152 24 0 chr11 77506843 77507133 -73276420 + AluSx SINE Alu 3 299 -13 1463 137 39 113 chr11 77507746 77508081 -73275472 + AluSg SINE Alu 1 310 0 2072 72 25 0 chr11 77508177 77508456 -73275097 - L1PA8 LINE L1 -1 6171 5886 380 375 65 26 chr11 77508487 77508826 -73274727 - L1ME4a LINE L1 -156 5965 5614 308 302 75 50 chr11 77509079 77509238 -73274315 + MIR SINE MIR 30 192 -70 262 178 0 0 chr11 77509832 77509877 -73273676 - MER53 DNA DNA 0 189 145 180 0 0 0 chr11 77509886 77509906 -73273647 + (T)n Simple_repeat Simple_repeat 1 20 0 211 244 35 81 chr11 77510294 77510380 -73273173 + MIR SINE MIR 25 106 -156 918 163 88 0 chr11 77510398 77510613 -73272940 - L1MA7 LINE L1 -6 6285 6052 * 2525 154 13 18 chr11 77510609 77511056 -73272497 + L1MA7 LINE L1 5615 6059 -232 231 263 168 36 chr11 77511056 77511193 -73272360 + MIR SINE MIR 93 247 -15 483 100 0 0 chr11 77511354 77511424 -73272129 + (TATG)n Simple_repeat Simple_repeat 4 73 0 881 150 0 21 chr11 77511424 77511564 -73271989 - FRAM SINE Alu -30 146 10 1190 149 11 0 chr11 77511576 77511750 -73271803 - AluSx SINE Alu -7 305 130 473 94 0 0 chr11 77512625 77512689 -73270864 - AluSx SINE Alu -174 139 76 1129 187 0 29 chr11 77512693 77512902 -73270651 - AluJo SINE Alu -109 203 1 1019 262 127 28 chr11 77512975 77513407 -73270146 - L1MB5 LINE L1 -54 6120 5646 1493 201 13 3 chr11 77513410 77513565 -73269988 + L1M4 LINE L1 5338 5490 -684 2125 142 0 7 chr11 77513565 77513875 -73269678 + AluSx SINE Alu 1 308 -4 1493 201 13 3 chr11 77513875 77514032 -73269521 + L1M4 LINE L1 5490 5653 -521 269 119 0 0 chr11 77514680 77514722 -73268831 - Alu SINE Alu -11 290 249 1312 118 10 0 chr11 77514822 77515026 -73268527 + HERVE LTR ERV1 4960 5165 -2648 2029 180 102 32 chr11 77515026 77517165 -73266388 - SATR1 Satellite Satellite -1 2288 1 709 230 284 9 chr11 77517193 77517524 -73266029 - SATR1 Satellite Satellite -1 469 48 1308 139 27 36 chr11 77517528 77517751 -73265802 - AluSq SINE Alu -91 222 2 701 219 51 0 chr11 77519646 77519842 -73263711 + MER6B DNA MER2_type 5 210 0 381 212 73 93 chr11 77519947 77520098 -73263455 - MER5B DNA MER1_type -6 172 25 1155 324 9 89 chr11 77520248 77520572 -73262981 - AluSq SINE Alu -1 302 5 1945 163 10 0 chr11 77520784 77521073 -73262480 + AluSx SINE Alu 3 294 -18 378 220 113 93 chr11 77521425 77521511 -73262042 - L1ME3A LINE L1 0 6170 6087 1791 145 7 42 chr11 77521511 77521821 -73261732 + AluJo SINE Alu 1 299 -13 378 220 113 93 chr11 77521821 77521969 -73261584 - L1ME3A LINE L1 -83 6087 5926 775 226 23 32 chr11 77521969 77522190 -73261363 + MER20 DNA MER1_type 1 219 0 378 220 113 93 chr11 77522190 77522245 -73261308 - L1ME3A LINE L1 -244 5926 5874 414 0 0 0 chr11 77523345 77523391 -73260162 + (CA)n Simple_repeat Simple_repeat 1 46 0 589 346 20 16 chr11 77523405 77523708 -73259845 - MLT1I LTR MaLR -3 406 103 584 130 110 0 chr11 77524105 77524205 -73259348 - AluJo SINE Alu -160 152 42 210 128 0 0 chr11 77524274 77524313 -73259240 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 2460 81 0 28 chr11 77524977 77525297 -73258256 + AluY SINE Alu 1 311 0 2156 110 7 7 chr11 77525535 77525843 -73257710 - AluSc SINE Alu -1 308 1 188 378 0 0 chr11 77526080 77526154 -73257399 + MIR3 SINE MIR 2 75 -133 1059 241 88 7 chr11 77526160 77526454 -73257099 - ERVL LTR ERVL -3615 2149 1832 2064 128 0 46 chr11 77526589 77526916 -73256637 - AluSp SINE Alu -1 312 1 1181 216 8 70 chr11 77527102 77527285 -73256268 + L1MA4 LINE L1 5767 5915 -385 1661 176 0 3 chr11 77527285 77527569 -73255984 + AluSx SINE Alu 1 283 -29 1181 216 8 70 chr11 77527569 77527773 -73255780 + L1MA4 LINE L1 5915 6130 -170 2162 112 3 3 chr11 77527853 77528156 -73255397 - AluSp SINE Alu -10 303 1 1832 255 29 7 chr11 77528201 77529196 -73254357 + L1MB3 LINE L1 4818 5834 -349 1906 142 0 31 chr11 77529197 77529514 -73254039 + AluSx SINE Alu 6 312 0 189 0 0 0 chr11 77529662 77529683 -73253870 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1244 211 15 41 chr11 77529688 77529776 -73253777 + L1MB3 LINE L1 5822 5911 -272 1902 138 35 0 chr11 77529776 77530059 -73253494 + AluSx SINE Alu 3 295 -17 1244 211 15 41 chr11 77530059 77530311 -73253242 + L1MB3 LINE L1 5911 6153 -30 24 32 0 0 chr11 77530331 77530362 -73253191 + AT_rich Low_complexity Low_complexity 1 31 0 3263 223 17 62 chr11 77530824 77531839 -73251714 + LTR5 LTR ERVK 1 969 0 1698 204 110 23 chr11 77532112 77533109 -73250444 - SATR1 Satellite Satellite -20 1083 1 369 254 11 28 chr11 77533221 77533402 -73250151 + (TTA)n Simple_repeat Simple_repeat 1 178 0 28 48 0 0 chr11 77533454 77533496 -73250057 + AT_rich Low_complexity Low_complexity 1 42 0 2109 227 76 12 chr11 77533496 77534465 -73249088 - SATR1 Satellite Satellite -131 1030 1 608 170 7 0 chr11 77535586 77535721 -73247832 + (TCCA)n Simple_repeat Simple_repeat 1 136 0 495 257 0 0 chr11 77535770 77535941 -73247612 + (TCCA)n Simple_repeat Simple_repeat 1 171 0 232 283 0 0 chr11 77535941 77535994 -73247559 + (CCCA)n Simple_repeat Simple_repeat 1 53 0 215 299 0 65 chr11 77536008 77536085 -73247468 - L2 LINE L2 -1 3312 3241 * 507 283 92 11 chr11 77536067 77536251 -73247302 + MIR SINE MIR 12 210 -52 199 407 25 8 chr11 77536379 77536497 -73247056 - L2 LINE L2 -163 3109 2990 211 348 18 36 chr11 77536694 77536806 -73246747 + MIR SINE MIR 113 222 -40 2314 110 7 0 chr11 77536916 77537225 -73246328 + AluSx SINE Alu 1 311 -1 225 0 0 0 chr11 77537358 77537383 -73246170 + (A)n Simple_repeat Simple_repeat 1 25 0 295 230 174 3 chr11 77537726 77537838 -73245715 + MIR SINE MIR 31 159 -49 195 148 70 0 chr11 77537956 77538002 -73245551 - MER5B DNA MER1_type -119 70 17 1901 137 22 11 chr11 77538285 77538587 -73244966 - AluJb SINE Alu 0 305 1 259 253 118 63 chr11 77538598 77538962 -73244591 - L1MC5 LINE L1 -30 7931 7548 2142 110 14 7 chr11 77539041 77539332 -73244221 + AluSc SINE Alu 1 293 -16 211 349 70 23 chr11 77540566 77540695 -73242858 - MIR3 SINE MIR -63 145 11 2155 118 3 13 chr11 77541659 77541973 -73241580 + AluSq SINE Alu 1 311 -2 1585 145 8 15 chr11 77541985 77542247 -73241306 + AluSx SINE Alu 1 260 -52 1240 198 33 135 chr11 77542399 77542858 -73240695 + MLT2B1 LTR ERVL 3 414 0 180 0 0 0 chr11 77543247 77543267 -73240286 + (TGG)n Simple_repeat Simple_repeat 2 21 0 573 89 0 0 chr11 77543435 77543514 -73240039 + MADE1 DNA Mariner 2 80 0 1897 191 116 2 chr11 77544389 77545104 -73238449 - SATR1 Satellite Satellite 0 796 1 43 47 0 0 chr11 77545104 77545168 -73238385 + AT_rich Low_complexity Low_complexity 1 64 0 2039 201 107 2 chr11 77545193 77546307 -73237246 - SATR1 Satellite Satellite -1 1231 1 278 272 5 9 chr11 77546419 77546507 -73237046 + MIR SINE MIR 62 147 -63 317 309 63 78 chr11 77546512 77546923 -73236630 - L2 LINE L2 -18 3254 2850 2215 115 13 7 chr11 77547202 77547507 -73236046 + AluSq SINE Alu 1 307 -6 268 281 97 18 chr11 77547964 77548078 -73235475 - L2 LINE L2 -13 3300 3178 317 295 111 73 chr11 77548553 77548994 -73234559 + L2 LINE L2 2804 3261 -11 333 254 67 79 chr11 77549510 77549675 -73233878 - MER5A DNA MER1_type -3 186 24 1530 144 5 0 chr11 77550216 77550431 -73233122 + AluSx SINE Alu 1 216 -96 2161 122 7 7 chr11 77550649 77550945 -73232608 - AluSq SINE Alu -17 296 1 204 311 96 15 chr11 77550994 77551129 -73232424 + L2 LINE L2 3125 3270 -43 288 259 12 35 chr11 77551259 77551344 -73232209 - MER5A DNA MER1_type 0 189 107 415 296 176 0 chr11 77551350 77551509 -73232044 + L2 LINE L2 2515 2701 -613 645 149 0 37 chr11 77551515 77551622 -73231931 - AluSg/x SINE Alu -17 295 193 424 276 8 31 chr11 77552601 77552728 -73230825 + MIR SINE MIR 8 131 -131 1054 47 62 0 chr11 77602786 77602914 -73180639 - LTR5 LTR ERVK -833 136 1 1921 145 0 4 chr11 77603257 77603533 -73180020 + AluSg SINE Alu 1 275 -35 231 36 0 0 chr11 77603541 77603569 -73179984 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 439 226 50 75 chr11 77603622 77603781 -73179772 - L2 LINE L2 0 3313 3159 935 212 69 0 chr11 77603940 77604157 -73179396 - LTR16A1 LTR ERVL 0 457 226 465 228 176 0 chr11 77604785 77604921 -73178632 - MIR SINE MIR -72 190 31 1568 159 67 25 chr11 77604926 77605209 -73178344 - AluJo SINE Alu -17 295 1 588 81 0 0 chr11 77605219 77605293 -73178260 - Alu SINE Alu -13 298 225 413 306 16 36 chr11 77605475 77605668 -73177885 - MLT1K LTR MaLR -302 286 98 1133 104 0 0 chr11 77605861 77606005 -73177548 + AluSp/q SINE Alu 159 302 -11 750 150 23 30 chr11 77606101 77606234 -73177319 + AluJo/FLAM SINE Alu 2 133 -169 1442 167 12 43 chr11 77606234 77606245 -73177308 + AluJo SINE Alu 3 13 -299 2001 164 0 0 chr11 77606245 77606543 -73177010 + AluSx SINE Alu 1 298 -14 1442 167 12 43 chr11 77606543 77606654 -73176899 + AluJo SINE Alu 13 249 -63 344 349 0 9 chr11 77606657 77606766 -73176787 - L1MC4 LINE L1 -1340 6702 6595 584 269 38 0 chr11 77606802 77606962 -73176591 + MER104 DNA Tc2 11 176 -4 2284 112 0 0 chr11 77607840 77608127 -73175426 + AluSx SINE Alu 1 287 -25 746 11 0 11 chr11 77608127 77608219 -73175334 + (TATAA)n Simple_repeat Simple_repeat 4 94 0 207 100 0 0 chr11 77608220 77608250 -73175303 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 1810 180 3 22 chr11 77608388 77608705 -73174848 + AluJo SINE Alu 1 311 -1 300 318 54 8 chr11 77608731 77608860 -73174693 - MIR SINE MIR -32 230 96 1660 152 0 16 chr11 77608880 77609130 -73174423 + AluJo SINE Alu 1 246 -66 2348 140 55 18 chr11 77609130 77609566 -73173987 + MER66B LTR ERV1 1 452 -34 4177 124 98 94 chr11 77609566 77610932 -73172621 + pTR5 LTR ERV1 742 2437 -1 1230 196 34 71 chr11 77611133 77611666 -73171887 + L1MB7 LINE L1 5643 6113 -71 1893 157 3 7 chr11 77611666 77611965 -73171588 - AluJb SINE Alu -14 298 1 1230 196 34 71 chr11 77611965 77612035 -73171518 + L1MB7 LINE L1 6113 6184 0 1742 180 3 41 chr11 77612046 77612186 -73171367 + AluJb SINE Alu 1 145 -167 1889 118 66 28 chr11 77612186 77612473 -73171080 + AluSx SINE Alu 6 303 -9 1742 180 3 41 chr11 77612473 77612649 -73170904 + AluJb SINE Alu 145 305 -7 2249 93 0 7 chr11 77612763 77613053 -73170500 + AluSx SINE Alu 1 288 -24 2099 124 7 10 chr11 77613694 77613992 -73169561 - AluSx SINE Alu -15 297 1 1572 169 45 77 chr11 77614189 77614502 -73169051 + AluJo SINE Alu 1 303 -9 575 239 96 23 chr11 77614664 77614882 -73168671 + MIR SINE MIR 29 262 0 1270 188 128 0 chr11 77615983 77616249 -73167304 + AluJo SINE Alu 1 300 -2 563 162 86 8 chr11 77617037 77617154 -73166399 + MER45A DNA AcHobo 1 126 -52 1560 170 58 7 chr11 77617155 77617432 -73166121 + AluJo SINE Alu 1 291 -21 2084 153 0 0 chr11 77617438 77617746 -73165807 + AluSq SINE Alu 1 308 -5 1359 191 38 80 chr11 77617773 77618018 -73165535 - MLT1C LTR MaLR -45 422 199 2082 126 3 7 chr11 77618018 77618311 -73165242 - AluSx SINE Alu -20 292 1 1359 191 38 80 chr11 77618311 77618464 -73165089 - MLT1C LTR MaLR -268 199 41 1473 204 28 11 chr11 77618484 77618769 -73164784 - AluJo SINE Alu -22 290 1 2209 95 11 0 chr11 77619425 77619708 -73163845 + AluSc SINE Alu 1 286 -23 2395 78 3 7 chr11 77619802 77620108 -73163445 + AluSq SINE Alu 1 305 -8 389 291 71 33 chr11 77621154 77621336 -73162217 + L2 LINE L2 3122 3310 -3 202 261 54 22 chr11 77622323 77622415 -73161138 + (CCCTAG)n Simple_repeat Simple_repeat 2 96 0 * 229 294 26 33 chr11 77622361 77622514 -73161039 + (CCCCAG)n Simple_repeat Simple_repeat 2 153 0 189 114 45 68 chr11 77623524 77623568 -73159985 - MIR SINE MIR -85 177 135 788 251 68 4 chr11 77623593 77623828 -73159725 + MIR SINE MIR 13 262 0 840 269 89 28 chr11 77623828 77624311 -73159242 - L2 LINE L2 -1 3312 2777 2134 135 0 0 chr11 77625748 77626045 -73157508 + AluSx SINE Alu 1 297 -15 448 242 186 25 chr11 77626990 77627308 -73156245 + LTR33A LTR ERVL 139 507 -16 2034 159 3 0 chr11 77627320 77627628 -73155925 - AluSx SINE Alu -3 309 1 666 165 50 8 chr11 77628126 77628247 -73155306 - FLAM_A SINE Alu -7 126 1 283 303 75 64 chr11 77628537 77628689 -73154864 + MIR SINE MIR 26 175 -68 1995 112 45 14 chr11 77628770 77628901 -73154652 + AluSg SINE Alu 3 128 -182 2254 112 14 0 chr11 77628901 77629197 -73154356 + AluSq SINE Alu 1 300 -13 1995 112 45 14 chr11 77629197 77629352 -73154201 + AluSg SINE Alu 128 298 -12 525 328 45 0 chr11 77629409 77629607 -73153946 - L1MD2 LINE L1 -351 6008 5802 254 254 15 15 chr11 77631407 77631474 -73152079 + MIR SINE MIR 81 147 -115 248 275 153 8 chr11 77631632 77631763 -73151790 - MIR SINE MIR -32 230 81 1907 159 3 13 chr11 77632039 77632375 -73151178 + AluJb SINE Alu 1 333 0 1964 147 3 10 chr11 77632477 77632776 -73150777 - AluSx SINE Alu -15 297 1 616 214 8 0 chr11 77632812 77632929 -73150624 + FLAM_A SINE Alu 7 124 -18 1099 108 24 0 chr11 77633007 77633174 -73150379 - MER30 DNA MER1_type -55 175 5 1949 117 16 55 chr11 77633310 77633618 -73149935 + AluSx SINE Alu 3 298 -14 1044 174 155 0 chr11 77633618 77633837 -73149716 + AluJb SINE Alu 43 295 -17 477 0 0 0 chr11 77634049 77634102 -73149451 + (TG)n Simple_repeat Simple_repeat 2 54 0 2157 109 3 3 chr11 77634102 77634387 -73149166 - AluSx SINE Alu -27 285 1 814 250 40 0 chr11 77636320 77636520 -73147033 + MER58A DNA MER1_type 1 208 -16 386 90 194 0 chr11 77637748 77637815 -73145738 + MADE1 DNA Mariner 1 80 0 570 123 0 0 chr11 77638350 77638491 -73145062 - AluSg/x SINE Alu 0 338 198 2066 91 4 18 chr11 77638492 77638789 -73144764 + AluSq SINE Alu 16 308 0 1832 125 32 11 chr11 77638868 77639147 -73144406 + AluSx SINE Alu 1 285 -27 1416 73 34 0 chr11 77639944 77640149 -73143404 + L1PA10 LINE L1 5957 6168 0 306 136 0 0 chr11 77640177 77640221 -73143332 - Alu SINE Alu -259 44 1 * 6082 171 38 3 chr11 77640221 77641386 -73142167 + HSMAR2 DNA Mariner 97 1301 -1 181 282 59 47 chr11 77644059 77644144 -73139409 + L2 LINE L2 3117 3202 -70 221 274 14 0 chr11 77645482 77645555 -73137998 + (TTA)n Simple_repeat Simple_repeat 3 76 0 2315 118 0 0 chr11 77646089 77646441 -73137112 - AluSg SINE Alu 0 310 1 213 183 0 0 chr11 77647860 77647920 -73135633 + CT-rich Low_complexity Low_complexity 1 60 0 255 31 0 0 chr11 77649114 77649146 -73134407 + (TG)n Simple_repeat Simple_repeat 1 32 0 3473 65 0 0 chr11 77649409 77649809 -73133744 - LTR5 LTR ERVK -290 679 280 6863 77 12 10 chr11 77649909 77651250 -73132303 + SVA Other Other 120 1384 -2 23 0 0 0 chr11 77651269 77651292 -73132261 + AT_rich Low_complexity Low_complexity 1 23 0 181 320 0 0 chr11 77653044 77653094 -73130459 - MIR SINE MIR -67 141 92 305 352 22 56 chr11 77653710 77653889 -73129664 + MIR3 SINE MIR 19 191 -17 2960 182 21 0 chr11 77654075 77654635 -73128918 - L1PA16 LINE L1 -9 6157 5586 239 311 41 49 chr11 77654767 77654889 -73128664 - L2 LINE L2 -2 3270 3150 356 256 93 8 chr11 77655763 77655892 -73127661 - Charlie8 DNA MER1_type -1910 507 368 234 98 0 24 chr11 77655915 77655956 -73127597 + (TG)n Simple_repeat Simple_repeat 2 41 0 385 220 126 55 chr11 77656087 77656249 -73127304 - Charlie8 DNA MER1_type -80 261 83 237 83 0 0 chr11 77656249 77656285 -73127268 + (CA)n Simple_repeat Simple_repeat 1 36 0 385 220 126 55 chr11 77656285 77656304 -73127249 - Charlie8 DNA MER1_type -258 83 67 225 159 0 0 chr11 77656582 77656626 -73126927 + CT-rich Low_complexity Low_complexity 1 44 0 2141 128 10 3 chr11 77656716 77657022 -73126531 + AluSg SINE Alu 1 308 -2 1400 220 47 62 chr11 77657492 77658005 -73125548 - MLT1D LTR MaLR 0 505 1 4537 256 47 67 chr11 77658496 77659812 -73123741 + L1M2 LINE L1 1 1271 -5578 2076 96 3 55 chr11 77659812 77660124 -73123429 + AluSp SINE Alu 13 308 -5 4537 256 47 67 chr11 77660124 77660621 -73122932 + L1M2 LINE L1 1271 1777 -5072 424 184 39 10 chr11 77660624 77660727 -73122826 + L1M2 LINE L1 1917 2022 -4827 1941 156 10 5 chr11 77660740 77661137 -73122416 + L1P LINE L1 4993 5391 -755 957 304 47 17 chr11 77661160 77661690 -73121863 + L1PBa LINE L1 6 551 -6312 1679 196 59 5 chr11 77661742 77662129 -73121424 + L1PBa LINE L1 638 1045 -5818 3013 116 19 113 chr11 77662144 77662782 -73120771 - LTR12 LTR ERV1 -134 580 3 687 230 11 48 chr11 77662865 77663135 -73120418 - pTR5 LTR ERV1 -1410 1028 769 303 217 0 0 chr11 77663146 77663215 -73120338 + L1PBa LINE L1 1095 1163 -5700 2116 202 76 25 chr11 77663235 77663829 -73119724 + L1MB7 LINE L1 5551 6174 -10 24 0 0 0 chr11 77663887 77663911 -73119642 + AT_rich Low_complexity Low_complexity 1 24 0 282 196 0 0 chr11 77664191 77664242 -73119311 - 5S rRNA rRNA -70 51 1 24 53 0 0 chr11 77664320 77664358 -73119195 + AT_rich Low_complexity Low_complexity 1 38 0 492 332 61 39 chr11 77664403 77664764 -73118789 - L1M4 LINE L1 -3328 3316 2948 889 174 26 0 chr11 77664769 77664964 -73118589 - L1 LINE L1 -1350 4796 4597 5299 96 52 18 chr11 77665006 77666247 -73117306 - L1PA8 LINE L1 0 6172 4894 1044 115 6 0 chr11 77666243 77666399 -73117154 - L1PA8 LINE L1 -1922 4224 4068 * 7290 125 9 1 chr11 77666400 77667635 -73115918 - L1PA8 LINE L1 -2587 3559 2315 1154 108 18 0 chr11 77667635 77667802 -73115751 - AluSp SINE Alu -143 170 1 1796 208 64 29 chr11 77667887 77668435 -73115118 - L1MA9 LINE L1 -46 6266 5700 1709 206 31 0 chr11 77668673 77668998 -73114555 + Tigger7 DNA MER2_type 7 341 -2146 25 31 0 0 chr11 77669005 77669037 -73114516 + AT_rich Low_complexity Low_complexity 1 32 0 503 252 84 0 chr11 77669042 77669161 -73114392 + Tigger7 DNA MER2_type 2458 2586 -1 4401 209 80 69 chr11 77669166 77670907 -73112646 - L1M4 LINE L1 -4833 1709 2 661 229 10 89 chr11 77671103 77671343 -73112210 + MLT1G1 LTR MaLR 2 206 -389 4627 182 26 24 chr11 77671380 77673194 -73110359 + L1PA15 LINE L1 4124 5932 -233 1892 112 0 8 chr11 77673194 77673453 -73110100 + AluSc SINE Alu 39 295 -14 4627 182 26 24 chr11 77673453 77673660 -73109893 + L1PA15 LINE L1 5932 6137 -28 491 251 54 0 chr11 77673766 77673933 -73109620 - L1M4 LINE L1 -1297 4849 4674 2383 55 0 26 chr11 77674500 77674809 -73108744 + AluY SINE Alu 1 301 -10 5061 175 30 11 chr11 77676132 77678190 -73105363 - L1PA16 LINE L1 -9 6808 4716 21 36 0 0 chr11 77678387 77678415 -73105138 + AT_rich Low_complexity Low_complexity 1 28 0 220 402 55 0 chr11 77678428 77678555 -73104998 - MIR3 SINE MIR -64 144 11 1822 133 65 9 chr11 77678653 77678975 -73104578 + L1MB1 LINE L1 5828 6167 -1 483 87 0 0 chr11 77681813 77681882 -73101671 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 2442 58 0 0 chr11 77684124 77684418 -73099135 - AluY SINE Alu -15 296 3 421 116 0 0 chr11 77684519 77684588 -73098965 - MER41A LTR ERV1 -88 466 398 407 236 0 28 chr11 77684712 77684818 -73098735 - MER20 DNA MER1_type -4 215 113 216 97 0 0 chr11 77684844 77684875 -73098678 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1253 291 47 49 chr11 77685054 77685481 -73098072 - MER110-int LTR ERV1 -1760 2887 2461 2117 96 57 0 chr11 77685481 77685763 -73097790 + AluSg SINE Alu 1 298 -12 1253 291 47 49 chr11 77685763 77686023 -73097530 - MER110-int LTR ERV1 -2186 2461 2202 324 226 126 16 chr11 77686031 77686221 -73097332 + L1MEc LINE L1 1974 2184 -4212 800 283 8 19 chr11 77686227 77686492 -73097061 + L1M3a LINE L1 7 268 -5687 5378 223 32 21 chr11 77686530 77688035 -73095518 - L1PA16 LINE L1 -3253 3544 2057 3687 62 2 2 chr11 77688035 77688505 -73095048 - L1PA5 LINE L1 0 6154 5685 5378 223 32 21 chr11 77688505 77688881 -73094672 - L1PA16 LINE L1 -4740 2057 1627 1688 129 118 21 chr11 77688881 77689213 -73094340 - THE1B LTR MaLR 0 364 1 5378 223 32 21 chr11 77689213 77689436 -73094117 - L1PA16 LINE L1 -5170 1627 1408 4911 168 21 5 chr11 77689480 77690644 -73092909 + L1MA7 LINE L1 5099 6281 -10 1173 267 6 3 chr11 77690674 77691004 -73092549 + L1MB7 LINE L1 5321 5651 -527 475 230 8 0 chr11 77691017 77691143 -73092410 + L1MB7 LINE L1 5763 5889 -295 665 161 109 23 chr11 77691175 77691349 -73092204 + MLT1F1 LTR MaLR 379 567 0 2062 70 0 15 chr11 77691459 77691729 -73091824 + AluY SINE Alu 35 300 -11 698 304 54 39 chr11 77691934 77692493 -73091060 - L1M4 LINE L1 -2828 3318 2752 1128 329 55 59 chr11 77692496 77693016 -73090537 - L2 LINE L2 -256 3057 2543 1894 140 3 32 chr11 77693016 77693330 -73090223 + AluSq SINE Alu 1 305 -8 1128 329 55 59 chr11 77693330 77693630 -73089923 - L2 LINE L2 -770 2543 2243 306 227 23 62 chr11 77694087 77694215 -73089338 + L1ME4a LINE L1 5744 5866 -255 2024 153 7 0 chr11 77694727 77695035 -73088518 + AluSx SINE Alu 2 311 -1 577 89 0 0 chr11 77695536 77695615 -73087938 - MADE1 DNA Mariner 0 80 2 1973 135 0 0 chr11 77696336 77696645 -73086908 + AluSx SINE Alu 1 309 0 1618 169 29 45 chr11 77697693 77698006 -73085547 + AluJb SINE Alu 1 308 -4 26 0 0 0 chr11 77698528 77698554 -73084999 + AT_rich Low_complexity Low_complexity 1 26 0 1370 182 107 3 chr11 77698591 77698910 -73084643 - L1MB7 LINE L1 -16 6168 5817 262 231 51 0 chr11 77698935 77699013 -73084540 + L1MB7 LINE L1 6087 6168 -16 3802 225 17 9 chr11 77699272 77700308 -73083245 - L1 LINE L1 -2769 3377 2333 1380 253 19 24 chr11 77700335 77700714 -73082839 - MLT1B LTR MaLR -13 377 1 1794 224 57 17 chr11 77700714 77701245 -73082308 + L1MCa LINE L1 1087 1839 -4768 1607 132 98 4 chr11 77701245 77701511 -73082042 - AluSx SINE Alu -21 291 1 1794 224 57 17 chr11 77701511 77701616 -73081937 + L1MCa LINE L1 1839 1938 -4669 4450 207 15 10 chr11 77701617 77702673 -73080880 + L1 LINE L1 4031 5091 -1055 750 299 153 14 chr11 77702837 77703262 -73080291 + L2 LINE L2 1348 1831 -1483 1295 228 116 31 chr11 77703786 77704662 -73078891 - SATR1 Satellite Satellite 0 950 1 21 36 0 0 chr11 77704708 77704736 -73078817 + AT_rich Low_complexity Low_complexity 1 28 0 291 225 6 55 chr11 77704753 77704935 -73078618 + (TTA)n Simple_repeat Simple_repeat 3 175 0 21343 107 12 13 chr11 77705014 77709063 -73074490 + HERVE LTR ERV1 1108 5165 -2648 2157 190 119 11 chr11 77709063 77710304 -73073249 - SATR1 Satellite Satellite 0 1375 1 1996 182 109 27 chr11 77710332 77711214 -73072339 - SATR1 Satellite Satellite 0 954 1 832 205 224 11 chr11 77711242 77711510 -73072043 - SATR1 Satellite Satellite -1 469 145 1282 109 29 29 chr11 77711577 77711787 -73071766 - AluSq SINE Alu -91 222 13 721 208 51 5 chr11 77713687 77713884 -73069669 + MER6B DNA MER2_type 5 210 0 371 286 27 27 chr11 77713989 77714136 -73069417 - MER5B DNA MER1_type -6 172 26 1744 139 0 46 chr11 77714280 77714604 -73068949 - AluSp SINE Alu -4 309 1 282 266 105 35 chr11 77714609 77714752 -73068801 - HsTC2 DNA Tc2 -118 1780 1628 1257 228 3 72 chr11 77714790 77714973 -73068580 + L1MA4 LINE L1 5767 5910 -390 1469 189 0 4 chr11 77714973 77715254 -73068299 + AluSx SINE Alu 1 280 -32 1257 228 3 72 chr11 77715254 77715461 -73068092 + L1MA4 LINE L1 5910 6130 -170 2020 106 3 3 chr11 77715540 77715841 -73067712 - AluSp SINE Alu -12 301 1 3067 236 25 40 chr11 77715886 77716879 -73066674 + L1MB3 LINE L1 4818 5825 -358 1795 127 3 37 chr11 77716879 77717202 -73066351 + AluSx SINE Alu 1 312 0 3067 236 25 40 chr11 77717202 77717311 -73066242 + L1MB3 LINE L1 5825 5934 -249 1909 133 0 0 chr11 77717311 77717597 -73065956 + AluSx SINE Alu 10 295 -17 3067 236 25 40 chr11 77717597 77717849 -73065704 + L1MB3 LINE L1 5934 6153 -30 32 0 0 0 chr11 77717869 77717901 -73065652 + AT_rich Low_complexity Low_complexity 1 32 0 2941 215 17 61 chr11 77718346 77719360 -73064193 + LTR5 LTR ERVK 1 969 0 252 360 61 28 chr11 77719685 77719899 -73063654 - MIR SINE MIR -10 252 32 1879 135 0 6 chr11 77720293 77720605 -73062948 + AluSg SINE Alu 1 310 0 287 279 57 36 chr11 77720965 77721105 -73062448 + L2 LINE L2 3171 3313 0 1974 122 0 3 chr11 77721163 77721467 -73062086 - AluY SINE Alu -8 303 1 195 42 0 0 chr11 77722616 77722640 -73060913 + (T)n Simple_repeat Simple_repeat 1 24 0 1124 225 206 44 chr11 77723165 77724590 -73058963 - SATR1 Satellite Satellite -1 1655 1 1437 236 201 20 chr11 77724627 77727118 -73056435 - SATR1 Satellite Satellite -3 2940 1 21 36 0 0 chr11 77727164 77727192 -73056361 + AT_rich Low_complexity Low_complexity 1 28 0 228 232 11 51 chr11 77727211 77727388 -73056165 + (TTA)n Simple_repeat Simple_repeat 3 172 0 27008 103 13 11 chr11 77727467 77731299 -73052254 + HERVE LTR ERV1 1108 4944 -2869 2041 189 84 22 chr11 77731306 77732373 -73051180 - SATR1 Satellite Satellite 0 1133 1 2023 113 0 0 chr11 77732381 77732665 -73050888 + AluSg SINE Alu 27 310 0 7705 111 28 28 chr11 77732674 77733381 -73050172 + Tigger1 DNA MER2_type 1004 1710 -708 2047 122 3 7 chr11 77733381 77733684 -73049869 + AluSx SINE Alu 1 302 -10 7705 111 28 28 chr11 77733684 77734143 -73049410 + Tigger1 DNA MER2_type 1710 2173 -245 2374 69 0 0 chr11 77734143 77734447 -73049106 + AluY SINE Alu 1 304 -7 7705 111 28 28 chr11 77734447 77734483 -73049070 + Tigger1 DNA MER2_type 2172 2207 -211 503 156 189 0 chr11 77734483 77734573 -73048980 + Tigger1 DNA MER2_type 2312 2418 0 237 65 0 0 chr11 77734932 77734963 -73048590 + (TG)n Simple_repeat Simple_repeat 2 32 0 2038 123 0 0 chr11 77735978 77736290 -73047263 - AluSq SINE Alu 0 312 1 212 379 74 0 chr11 77736828 77736923 -73046630 - MIR SINE MIR -58 150 49 1982 134 7 0 chr11 77737260 77737558 -73045995 - AluJb SINE Alu -12 300 1 267 207 134 12 chr11 77737621 77737703 -73045850 + MER91C DNA MER1_type 27 118 -22 400 239 84 21 chr11 77738206 77738348 -73045205 - MIR SINE MIR -65 197 47 1623 83 0 9 chr11 77738366 77738582 -73044971 - AluSg/x SINE Alu -13 296 83 2421 74 0 0 chr11 77738582 77738893 -73044660 - AluY SINE Alu 0 311 1 2429 47 3 25 chr11 77738916 77739234 -73044319 - AluY SINE Alu 0 311 1 2235 84 13 0 chr11 77739282 77739581 -73043972 - AluSp SINE Alu -10 303 1 233 378 0 0 chr11 77739729 77739811 -73043742 + MIR SINE MIR 49 130 -78 842 136 0 0 chr11 77739816 77739968 -73043585 + AluSg/x SINE Alu 158 309 0 1347 168 30 82 chr11 77739968 77740150 -73043403 - AluJo SINE Alu -11 301 140 1551 167 44 0 chr11 77740150 77740420 -73043133 - AluJb SINE Alu -30 282 1 1347 168 30 82 chr11 77740420 77740541 -73043012 - AluJo SINE Alu -172 140 14 1987 128 0 3 chr11 77740859 77741149 -73042404 + AluSg SINE Alu 5 293 -17 1638 170 7 3 chr11 77741264 77741578 -73041975 - AluJo SINE Alu 0 315 1 267 254 217 15 chr11 77741591 77741731 -73041822 + MER20B DNA MER1_type 47 214 -5 2347 85 0 0 chr11 77742526 77742831 -73040722 - AluY SINE Alu -6 305 1 273 276 105 19 chr11 77742993 77743098 -73040455 + L2 LINE L2 3157 3270 -2 1039 145 0 0 chr11 77743208 77743367 -73040186 + FRAM SINE Alu 1 158 -18 2346 65 0 19 chr11 77743373 77743681 -73039872 + AluY SINE Alu 1 302 -9 253 173 27 27 chr11 77743727 77743802 -73039751 - L1MC5 LINE L1 -50 7911 7837 323 348 109 42 chr11 77743935 77744312 -73039241 + L2 LINE L2 2869 3270 -2 21 0 0 0 chr11 77744589 77744610 -73038943 + AT_rich Low_complexity Low_complexity 1 21 0 1426 58 0 2 chr11 77744623 77744880 -73038673 + AluY SINE Alu 1 305 -6 1660 154 14 0 chr11 77744966 77745273 -73038280 + AluJb SINE Alu 1 311 0 293 266 0 0 chr11 77745506 77745585 -73037968 + L1 LINE L1 4906 4984 -1162 2081 116 0 0 chr11 77745595 77745923 -73037630 + AluSx SINE Alu 1 328 0 1562 161 25 14 chr11 77745944 77746224 -73037329 + AluJb SINE Alu 1 283 -29 1691 141 46 0 chr11 77746228 77746512 -73037041 + AluSx SINE Alu 1 297 -15 412 297 227 4 chr11 77748692 77748921 -73034632 - L2 LINE L2 0 3272 2993 217 204 0 23 chr11 77749571 77749615 -73033938 + MIR3 SINE MIR 157 199 -9 2109 110 0 7 chr11 77749810 77750111 -73033442 - AluSp SINE Alu -14 299 1 278 308 81 95 chr11 77750551 77750762 -73032791 - L2 LINE L2 -50 3222 3015 643 286 70 21 chr11 77751169 77751410 -73032143 - MIR SINE MIR -8 254 2 336 335 59 13 chr11 77751544 77751696 -73031857 - MIR SINE MIR -74 188 30 230 262 37 93 chr11 77752340 77752447 -73031106 + MIR3 SINE MIR 60 160 -48 531 289 8 16 chr11 77752673 77752801 -73030752 + L2 LINE L2 3136 3262 -10 202 347 53 11 chr11 77752822 77752917 -73030636 - MIR SINE MIR -1 261 163 186 304 96 35 chr11 77753187 77753302 -73030251 - L2 LINE L2 -14 3258 3137 388 213 130 19 chr11 77753745 77753853 -73029700 + MER117 DNA MER1_type 2 121 -76 941 229 45 25 chr11 77753860 77753915 -73029638 - MIR SINE MIR 0 262 210 1829 150 37 0 chr11 77753915 77754209 -73029344 - AluJb SINE Alu -7 305 1 941 229 45 25 chr11 77754209 77754397 -73029156 - MIR SINE MIR -52 210 14 257 349 151 0 chr11 77754506 77754612 -73028941 + L2 LINE L2 3137 3258 -14 * 439 243 29 10 chr11 77754606 77754709 -73028844 + MIR3 SINE MIR 83 187 -21 183 42 0 0 chr11 77754781 77754805 -73028748 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 1976 112 7 0 chr11 77754814 77755108 -73028445 - AluY SINE Alu 0 311 16 2335 57 0 17 chr11 77755372 77755670 -73027883 - AluY SINE Alu -18 293 1 308 247 97 32 chr11 77755810 77755903 -73027650 + L2 LINE L2 3172 3270 -2 398 252 37 59 chr11 77756159 77756294 -73027259 + L2 LINE L2 3177 3308 -5 1105 105 52 6 chr11 77756294 77756466 -73027087 - AluSg/x SINE Alu -10 302 123 337 337 63 17 chr11 77756504 77756679 -73026874 - L3 LINE CR1 -85 1492 1310 244 285 32 24 chr11 77757219 77757291 -73026262 - MIR SINE MIR -3 259 184 2274 82 7 0 chr11 77757291 77757595 -73025958 - AluSp SINE Alu -7 306 1 244 285 32 24 chr11 77757595 77757645 -73025908 - MIR SINE MIR -78 184 136 2162 102 3 0 chr11 77757885 77758180 -73025373 - AluSx SINE Alu -16 296 1 468 199 87 34 chr11 77758519 77758669 -73024884 - MIR SINE MIR -3 205 52 344 354 74 77 chr11 77758762 77759098 -73024455 - L2 LINE L2 -19 3253 2919 257 316 86 34 chr11 77759136 77759253 -73024300 - L2 LINE L2 -17 3255 3133 213 296 0 0 chr11 77759364 77759418 -73024135 - L2 LINE L2 -218 3054 3001 684 341 37 44 chr11 77759589 77760259 -73023294 - L2 LINE L2 0 3272 2546 1074 306 66 23 chr11 77760415 77760907 -73022646 - L2 LINE L2 -39 3274 2742 2411 83 0 3 chr11 77760907 77761208 -73022345 - AluY SINE Alu -10 301 2 1074 306 66 23 chr11 77761208 77761387 -73022166 - L2 LINE L2 -571 2742 2572 440 145 0 0 chr11 77761388 77761457 -73022096 - MLT1A1 LTR MaLR 0 365 297 1974 96 57 7 chr11 77761457 77761737 -73021816 + AluSq SINE Alu 1 294 -19 239 130 0 0 chr11 77761742 77761788 -73021765 - LTR66 LTR ERVL -171 439 394 1569 199 17 23 chr11 77761810 77762112 -73021441 - MLT1A1 LTR MaLR -65 300 1 460 257 9 0 chr11 77762114 77762227 -73021326 - L2 LINE L2 -738 2576 2463 272 204 19 0 chr11 77762300 77762354 -73021199 - L2 LINE L2 -1009 2305 2251 229 242 91 15 chr11 77762360 77762426 -73021127 + MIR SINE MIR 33 103 -105 599 318 97 66 chr11 77762512 77763026 -73020527 - L2 LINE L2 -19 3253 2710 2266 103 0 3 chr11 77763026 77763318 -73020235 + AluSx SINE Alu 1 291 -21 599 318 97 66 chr11 77763318 77763431 -73020122 - L2 LINE L2 -562 2710 2602 2051 133 10 3 chr11 77763964 77764265 -73019288 - AluJo SINE Alu -9 303 1 29 28 0 0 chr11 77764274 77764310 -73019243 + AT_rich Low_complexity Low_complexity 1 36 0 507 193 18 0 chr11 77764692 77764806 -73018747 + L1MB8 LINE L1 5215 5330 -816 1770 170 7 0 chr11 77764807 77765118 -73018435 + AluJo SINE Alu 1 313 0 1605 186 38 71 chr11 77765119 77765371 -73018182 + L1MB8 LINE L1 5672 5906 -272 503 271 8 15 chr11 77765371 77765504 -73018049 - FLAM_A SINE Alu -1 132 1 1605 186 38 71 chr11 77765504 77765676 -73017877 + L1MB8 LINE L1 5906 6082 -96 989 155 0 0 chr11 77765681 77765836 -73017717 - AluSg/x SINE Alu -4 308 154 2036 112 20 0 chr11 77765844 77766140 -73017413 - AluSx SINE Alu -10 302 1 1616 148 93 4 chr11 77766202 77766472 -73017081 + AluJo SINE Alu 1 294 -18 517 297 84 66 chr11 77766568 77766888 -73016665 - L2 LINE L2 -424 2890 2565 2214 115 10 0 chr11 77767210 77767514 -73016039 + AluSx SINE Alu 1 307 -5 247 293 0 12 chr11 77768611 77768693 -73014860 + (TAA)n Simple_repeat Simple_repeat 1 81 0 21 0 0 0 chr11 77768993 77769014 -73014539 + GC_rich Low_complexity Low_complexity 1 21 0 423 204 10 39 chr11 77769597 77769700 -73013853 + L1MC3 LINE L1 6040 6139 -1646 25 65 0 0 chr11 77769739 77769785 -73013768 + AT_rich Low_complexity Low_complexity 1 46 0 187 178 0 89 chr11 77769875 77769920 -73013633 + MER5B DNA MER1_type 12 52 -126 184 151 94 38 chr11 77770237 77770290 -73013263 - L3b LINE CR1 -263 1320 1265 1424 137 128 50 chr11 77772667 77772988 -73010565 + MER4A LTR ERV1 1 346 -318 694 131 196 75 chr11 77772993 77773243 -73010310 + MER4C LTR ERV1 157 445 -20 21 57 0 0 chr11 77774896 77774931 -73008622 + AT_rich Low_complexity Low_complexity 1 35 0 2161 125 0 0 chr11 77777510 77777805 -73005748 + AluSx SINE Alu 1 295 -17 211 329 0 0 chr11 77778133 77778203 -73005350 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 31 0 0 0 chr11 77778242 77778273 -73005280 + AT_rich Low_complexity Low_complexity 1 31 0 2222 100 10 0 chr11 77779353 77779654 -73003899 - AluSp SINE Alu -9 304 1 25 0 0 0 chr11 77780445 77780470 -73003083 + AT_rich Low_complexity Low_complexity 1 25 0 606 268 24 53 chr11 77780805 77781014 -73002539 + MER3 DNA MER1_type 7 209 0 311 200 0 0 chr11 77780972 77781022 -73002531 - MER3 DNA MER1_type -120 89 40 * 1757 256 110 32 chr11 77781212 77781869 -73001684 + MER50 LTR ERV1 27 734 0 192 315 45 22 chr11 77782293 77782382 -73001171 - L2 LINE L2 -5 3308 3218 1405 222 102 32 chr11 77782559 77782901 -73000652 + MST-int LTR MaLR 551 916 -735 1736 126 84 45 chr11 77782901 77783235 -73000318 - THE1B LTR MaLR -17 347 1 1658 161 34 0 chr11 77783235 77783527 -73000026 + THE1-int LTR MaLR 861 1162 -418 3120 152 36 2 chr11 77783529 77784022 -72999531 + L1PA16 LINE L1 5647 6156 -10 1690 60 0 82 chr11 77784045 77784278 -72999275 + AluY SINE Alu 88 301 -10 1506 181 13 13 chr11 77784278 77784569 -72998984 + L1MA10 LINE L1 5322 5615 -676 4078 93 11 0 chr11 77784569 77785108 -72998445 + L1PA10 LINE L1 5497 6041 -127 2383 210 25 29 chr11 77785100 77785658 -72997895 + L1MA10 LINE L1 5779 6334 0 * 548 279 69 53 chr11 77785681 77785928 -72997625 + MLT1J LTR MaLR 207 457 -54 234 91 0 0 chr11 77786235 77786268 -72997285 + (CCCCCT)n Simple_repeat Simple_repeat 1 33 0 303 28 0 0 chr11 77786391 77786427 -72997126 + (A)n Simple_repeat Simple_repeat 1 36 0 7678 111 31 16 chr11 77786430 77787136 -72996417 + Tigger1 DNA MER2_type 1004 1735 -683 2153 122 3 7 chr11 77787136 77787439 -72996114 + AluSx SINE Alu 1 302 -10 7678 111 31 16 chr11 77787439 77787897 -72995656 + Tigger1 DNA MER2_type 1735 2185 -233 2449 72 0 0 chr11 77787897 77788201 -72995352 + AluY SINE Alu 1 304 -7 510 156 189 0 chr11 77788237 77788327 -72995226 + Tigger1 DNA MER2_type 2312 2418 0 237 65 0 0 chr11 77788686 77788717 -72994836 + (TG)n Simple_repeat Simple_repeat 2 32 0 2140 123 0 0 chr11 77789732 77790044 -72993509 - AluSq SINE Alu 0 312 1 185 366 78 21 chr11 77790582 77790724 -72992829 - MIR3 SINE MIR -58 150 1 2068 137 7 0 chr11 77791015 77791314 -72992239 - AluJb SINE Alu -11 301 1 262 207 134 12 chr11 77791377 77791459 -72992094 - MER91C DNA MER1_type -26 114 23 383 234 88 22 chr11 77791967 77792104 -72991449 - MIR SINE MIR -70 192 47 2246 51 41 20 chr11 77792122 77792414 -72991139 - AluY SINE Alu -13 298 1 390 255 25 119 chr11 77792427 77792705 -72990848 + L1ME3A LINE L1 5698 5949 -221 1598 177 10 23 chr11 77792794 77793094 -72990459 - AluJo SINE Alu -16 296 1 1384 162 112 23 chr11 77793278 77793581 -72989972 + L1MB2 LINE L1 5813 6142 -29 1671 188 7 10 chr11 77793611 77793903 -72989650 + AluJo SINE Alu 6 296 -16 847 280 122 29 chr11 77794072 77794329 -72989224 + L1MD2 LINE L1 4780 5012 -1347 1806 176 3 0 chr11 77794329 77794618 -72988935 + AluJb SINE Alu 1 290 -22 847 280 122 29 chr11 77794618 77795344 -72988209 + L1MD2 LINE L1 5012 5884 -475 1160 189 38 5 chr11 77795769 77795981 -72987572 - MER20 DNA MER1_type 0 219 1 2259 105 3 0 chr11 77796132 77796427 -72987126 + AluSp SINE Alu 1 296 -17 1888 168 7 0 chr11 77796439 77796731 -72986822 + AluJb SINE Alu 1 294 -18 2345 107 0 0 chr11 77796733 77797043 -72986510 + AluSq SINE Alu 1 310 -3 21 57 0 0 chr11 77797085 77797120 -72986433 + AT_rich Low_complexity Low_complexity 1 35 0 2325 74 0 0 chr11 77797159 77797469 -72986084 - AluY SINE Alu 0 310 1 327 347 36 31 chr11 77797655 77797848 -72985705 - MIR SINE MIR -49 213 20 221 289 22 33 chr11 77798221 77798311 -72985242 - L3b LINE CR1 -103 1480 1392 435 295 98 70 chr11 77798622 77798937 -72984616 + L2 LINE L2 2946 3269 -3 386 344 59 18 chr11 77798949 77799170 -72984383 + L3 LINE CR1 1205 1434 -143 524 312 60 69 chr11 77799264 77799581 -72983972 - L3 LINE CR1 -268 1309 996 486 67 0 0 chr11 77799699 77799759 -72983794 - Alu SINE Alu -257 61 2 359 349 11 48 chr11 77799833 77800022 -72983531 + L2 LINE L2 2932 3113 -159 180 291 216 38 chr11 77800024 77800316 -72983237 + L2 LINE L2 2424 2767 -547 1975 144 7 3 chr11 77800475 77800773 -72982780 + AluJb SINE Alu 1 299 -13 186 325 0 65 chr11 77801233 77801310 -72982243 + L2 LINE L2 3117 3188 -84 1858 176 0 0 chr11 77801344 77801639 -72981914 + AluJb SINE Alu 1 295 -17 1854 133 59 4 chr11 77801641 77801912 -72981641 + AluSx SINE Alu 1 286 -26 2179 95 0 24 chr11 77801923 77802218 -72981335 + AluSg1 SINE Alu 1 288 -21 2159 110 3 17 chr11 77802510 77802809 -72980744 + AluSx SINE Alu 1 295 -17 1072 79 0 0 chr11 77802866 77803006 -72980547 - AluY SINE Alu -17 294 155 2110 100 57 0 chr11 77803151 77803431 -72980122 + AluSp SINE Alu 1 296 -17 370 265 36 0 chr11 77803445 77803528 -72980025 - MIR3 SINE MIR -46 162 77 282 30 0 0 chr11 77803661 77803694 -72979859 + AluYa8 SINE Alu 156 188 -112 916 173 0 13 chr11 77803712 77803868 -72979685 + FAM SINE Alu 1 41 -8 4357 159 32 9 chr11 77803870 77804654 -72978899 + L1MB8 LINE L1 5322 6123 -55 993 154 32 86 chr11 77804665 77804738 -72978815 - L1MA7 LINE L1 -4 6287 6212 2179 113 7 0 chr11 77804738 77805029 -72978524 + AluSx SINE Alu 1 293 -19 993 154 32 86 chr11 77805029 77805234 -72978319 - L1MA7 LINE L1 -79 6212 6024 2063 134 3 0 chr11 77805245 77805543 -72978010 - AluJo SINE Alu -13 299 1 391 138 0 0 chr11 77805546 77805611 -72977942 + L1MB8 LINE L1 6111 6175 -3 469 281 163 7 chr11 77805682 77805835 -72977718 - MER5A DNA MER1_type 0 189 13 225 261 14 43 chr11 77806787 77806856 -72976697 - MIR SINE MIR -87 175 109 236 336 30 37 chr11 77807144 77807278 -72976275 - L2 LINE L2 -8 3305 3173 824 208 69 0 chr11 77807282 77807441 -72976112 + MER96 DNA MER1_type? 1 170 -5 699 217 153 0 chr11 77807508 77807665 -72975888 - MER5A DNA MER1_type 0 189 9 247 375 42 6 chr11 77807803 77807971 -72975582 - L2 LINE L2 -292 2980 2807 331 229 14 0 chr11 77808633 77808703 -72974850 + MER20 DNA MER1_type 143 213 -6 239 293 202 85 chr11 77808869 77809221 -72974332 + L2 LINE L2 2831 3223 -49 891 209 60 20 chr11 77809677 77809878 -72973675 + MIR SINE MIR 44 252 -10 890 331 86 59 chr11 77810072 77810748 -72972805 + L3 LINE CR1 757 1450 -127 710 155 142 47 chr11 77810774 77810922 -72972631 + FRAM SINE Alu 1 153 -23 440 298 206 0 chr11 77810967 77811108 -72972445 + L3 LINE CR1 1407 1576 -1 311 259 138 19 chr11 77811224 77811390 -72972163 - MIR SINE MIR -63 145 2 324 279 81 0 chr11 77811489 77811600 -72971953 - L1MC4 LINE L1 -1 8041 7922 22 0 0 0 chr11 77811758 77811780 -72971773 + AT_rich Low_complexity Low_complexity 1 22 0 2288 108 0 0 chr11 77811842 77812147 -72971406 - AluSx SINE Alu -7 305 1 1965 156 3 7 chr11 77813492 77813793 -72969760 + AluJb SINE Alu 4 303 -9 930 208 27 27 chr11 77813793 77814003 -72969550 + L1M4c LINE L1 2286 2498 -3886 449 200 0 0 chr11 77814003 77814078 -72969475 + AluSp SINE Alu 136 210 -103 24 0 0 0 chr11 77814137 77814161 -72969392 + AT_rich Low_complexity Low_complexity 1 24 0 2406 58 14 3 chr11 77814177 77814472 -72969081 - AluY SINE Alu -12 299 2 5088 191 33 31 chr11 77814916 77815550 -72968003 - L1M3 LINE L1 -533 5647 5016 2187 97 7 0 chr11 77815550 77815838 -72967715 + AluSg SINE Alu 1 290 -20 5088 191 33 31 chr11 77815838 77816683 -72966870 - L1M3 LINE L1 -1164 5016 4168 1517 181 0 36 chr11 77816683 77816986 -72966567 - AluJb SINE Alu -18 294 3 1913 138 31 0 chr11 77817463 77817754 -72965799 - AluJb SINE Alu -12 300 1 493 251 107 51 chr11 77817914 77818227 -72965326 - L1MC/D LINE L1 -740 5434 5312 2309 93 3 0 chr11 77818232 77818522 -72965031 - AluSp SINE Alu -22 291 1 529 223 62 62 chr11 77818528 77818690 -72964863 - HAL1 LINE L1 0 2507 2343 1672 159 10 40 chr11 77818690 77818992 -72964561 - AluJo SINE Alu -19 293 1 529 223 62 62 chr11 77818992 77819022 -72964531 - HAL1 LINE L1 -163 2344 2315 25 0 0 0 chr11 77819038 77819063 -72964490 + AT_rich Low_complexity Low_complexity 1 25 0 2728 29 0 0 chr11 77819068 77819375 -72964178 - AluYb8 SINE Alu -11 307 1 39 38 0 0 chr11 77819410 77819463 -72964090 + AT_rich Low_complexity Low_complexity 1 53 0 1478 104 0 0 chr11 77819545 77819737 -72963816 - AluSg/x SINE Alu -4 306 115 974 94 31 0 chr11 77819796 77819923 -72963630 - AluSc SINE Alu -177 132 2 261 121 43 172 chr11 77819987 77820103 -72963450 - HAL1 LINE L1 -333 2174 2074 1991 124 10 3 chr11 77820272 77820563 -72962990 - AluSx SINE Alu -19 293 1 268 241 126 0 chr11 77820961 77821048 -72962505 + L1ME LINE L1 5561 5658 -504 2275 119 0 0 chr11 77821077 77821388 -72962165 - AluSx SINE Alu -1 311 1 1742 164 46 0 chr11 77821390 77821670 -72961883 - AluJo SINE Alu -19 293 1 240 226 0 48 chr11 77821700 77821762 -72961791 - MIR SINE MIR -3 259 201 1130 150 0 6 chr11 77821770 77821937 -72961616 - AluSg/x SINE Alu -13 299 134 2169 96 3 10 chr11 77821937 77822230 -72961323 - AluSq SINE Alu -22 291 1 564 298 29 23 chr11 77822248 77822419 -72961134 - MIR SINE MIR -89 173 2 514 294 95 27 chr11 77822419 77822780 -72960773 - L3 LINE CR1 -195 1382 922 2047 139 3 10 chr11 77822815 77823118 -72960435 - AluJb SINE Alu -11 301 1 2038 101 14 7 chr11 77823130 77823408 -72960145 - AluSp SINE Alu -15 298 19 2324 86 0 7 chr11 77823485 77823786 -72959767 - AluSx SINE Alu -13 299 1 183 100 0 0 chr11 77824261 77824291 -72959262 + (GTGTG)n Simple_repeat Simple_repeat 1 30 0 2158 142 10 0 chr11 77824428 77824737 -72958816 + AluJb SINE Alu 1 312 0 207 0 0 0 chr11 77824887 77824910 -72958643 + (A)n Simple_repeat Simple_repeat 1 23 0 186 325 0 65 chr11 77825394 77825471 -72958082 + L2 LINE L2 3117 3188 -84 1858 176 0 0 chr11 77825505 77825800 -72957753 + AluJb SINE Alu 1 295 -17 1854 133 59 4 chr11 77825802 77826073 -72957480 + AluSx SINE Alu 1 286 -26 2189 95 0 24 chr11 77826084 77826380 -72957173 + AluSg1 SINE Alu 1 289 -20 2214 104 3 17 chr11 77826672 77826970 -72956583 + AluSx SINE Alu 1 294 -18 1072 79 0 0 chr11 77827027 77827167 -72956386 - AluY SINE Alu -17 294 155 2110 100 57 0 chr11 77827312 77827592 -72955961 + AluSp SINE Alu 1 296 -17 370 265 36 0 chr11 77827606 77827689 -72955864 - MIR3 SINE MIR -46 162 77 282 30 0 0 chr11 77827822 77827855 -72955698 + AluYa8 SINE Alu 156 188 -112 1107 136 0 0 chr11 77827872 77828026 -72955527 + FAM SINE Alu 1 41 -8 4357 159 32 9 chr11 77828028 77828812 -72954741 + L1MB8 LINE L1 5322 6123 -55 1012 151 32 86 chr11 77828823 77828896 -72954657 - L1MA7 LINE L1 -4 6287 6212 2141 123 3 0 chr11 77828896 77829188 -72954365 + AluSx SINE Alu 1 293 -19 1012 151 32 86 chr11 77829188 77829393 -72954160 - L1MA7 LINE L1 -79 6212 6024 2063 134 3 0 chr11 77829404 77829702 -72953851 - AluJo SINE Alu -13 299 1 391 127 0 0 chr11 77829705 77829768 -72953785 + L1MB7 LINE L1 6113 6175 -9 469 281 163 7 chr11 77829841 77829994 -72953559 - MER5A DNA MER1_type 0 189 13 225 261 14 43 chr11 77830946 77831015 -72952538 - MIR SINE MIR -87 175 109 236 336 30 37 chr11 77831303 77831437 -72952116 - L2 LINE L2 -8 3305 3173 824 208 69 0 chr11 77831441 77831600 -72951953 + MER96 DNA MER1_type? 1 170 -5 699 217 153 0 chr11 77831667 77831824 -72951729 - MER5A DNA MER1_type 0 189 9 247 375 42 6 chr11 77831962 77832130 -72951423 - L2 LINE L2 -292 2980 2807 331 229 14 0 chr11 77832792 77832862 -72950691 + MER20 DNA MER1_type 143 213 -6 239 293 202 85 chr11 77833028 77833380 -72950173 + L2 LINE L2 2831 3223 -49 891 209 60 20 chr11 77833836 77834037 -72949516 + MIR SINE MIR 44 252 -10 884 331 86 59 chr11 77834231 77834907 -72948646 + L3 LINE CR1 757 1450 -127 710 155 142 47 chr11 77834933 77835081 -72948472 + FRAM SINE Alu 1 153 -23 440 298 206 0 chr11 77835126 77835267 -72948286 + L3 LINE CR1 1407 1576 -1 311 259 138 19 chr11 77835383 77835549 -72948004 - MIR SINE MIR -63 145 2 324 279 81 0 chr11 77835648 77835759 -72947794 - L1MC4 LINE L1 -1 8041 7922 22 0 0 0 chr11 77835917 77835939 -72947614 + AT_rich Low_complexity Low_complexity 1 22 0 2279 109 0 0 chr11 77836001 77836305 -72947248 - AluSx SINE Alu -8 304 1 1965 156 3 7 chr11 77837651 77837952 -72945601 + AluJb SINE Alu 4 303 -9 930 208 27 27 chr11 77837952 77838162 -72945391 + L1M4c LINE L1 2286 2498 -3886 449 200 0 0 chr11 77838162 77838237 -72945316 + AluSp SINE Alu 136 210 -103 24 0 0 0 chr11 77838296 77838320 -72945233 + AT_rich Low_complexity Low_complexity 1 24 0 2415 57 14 3 chr11 77838336 77838632 -72944921 - AluY SINE Alu -11 300 2 5088 191 33 31 chr11 77839076 77839710 -72943843 - L1M3 LINE L1 -533 5647 5016 2187 97 7 0 chr11 77839710 77839998 -72943555 + AluSg SINE Alu 1 290 -20 5088 191 33 31 chr11 77839998 77840843 -72942710 - L1M3 LINE L1 -1164 5016 4168 1640 168 0 36 chr11 77840843 77841146 -72942407 - AluJb SINE Alu -18 294 3 211 267 78 69 chr11 77841157 77841273 -72942280 + L3 LINE CR1 1452 1568 -9 662 286 90 63 chr11 77841533 77841624 -72941929 - L1MC4a LINE L1 -1913 5895 5808 1913 138 31 0 chr11 77841624 77841915 -72941638 - AluJb SINE Alu -12 300 1 662 286 90 63 chr11 77841915 77842376 -72941177 - L1MC4a LINE L1 -2000 5808 5328 2309 93 3 0 chr11 77842398 77842688 -72940865 - AluSp SINE Alu -22 291 1 529 223 62 62 chr11 77842694 77842856 -72940697 - HAL1 LINE L1 0 2507 2343 1732 156 10 36 chr11 77842856 77843157 -72940396 - AluJo SINE Alu -19 293 1 529 223 62 62 chr11 77843157 77843187 -72940366 - HAL1 LINE L1 -163 2344 2315 25 0 0 0 chr11 77843203 77843228 -72940325 + AT_rich Low_complexity Low_complexity 1 25 0 2793 23 0 0 chr11 77843233 77843540 -72940013 - AluYb8 SINE Alu -11 307 1 27 0 0 0 chr11 77843589 77843616 -72939937 + AT_rich Low_complexity Low_complexity 1 27 0 286 224 35 0 chr11 77843618 77843703 -72939850 - HAL1 LINE L1 -169 2338 2251 1478 104 0 0 chr11 77843710 77843902 -72939651 - AluSg/x SINE Alu -4 308 117 974 94 31 0 chr11 77843961 77844088 -72939465 - AluSc SINE Alu -177 132 2 261 121 43 172 chr11 77844152 77844268 -72939285 - HAL1 LINE L1 -333 2174 2074 1991 124 10 3 chr11 77844437 77844728 -72938825 - AluSx SINE Alu -19 293 1 482 264 41 108 chr11 77845126 77845242 -72938311 + L1ME3A LINE L1 5561 5683 -487 2395 96 0 3 chr11 77845242 77845555 -72937998 - AluSx SINE Alu 0 312 1 482 264 41 108 chr11 77845555 77845846 -72937707 + L1ME3A LINE L1 5683 5949 -221 1598 177 10 23 chr11 77845935 77846235 -72937318 - AluJo SINE Alu -16 296 1 1384 162 112 23 chr11 77846419 77846722 -72936831 + L1MB2 LINE L1 5813 6142 -29 1671 188 7 10 chr11 77846752 77847044 -72936509 + AluJo SINE Alu 6 296 -16 847 280 122 29 chr11 77847213 77847470 -72936083 + L1MD2 LINE L1 4780 5012 -1347 1806 176 3 0 chr11 77847470 77847759 -72935794 + AluJb SINE Alu 1 290 -22 847 280 122 29 chr11 77847759 77848485 -72935068 + L1MD2 LINE L1 5012 5884 -475 1160 189 38 5 chr11 77848910 77849122 -72934431 - MER20 DNA MER1_type 0 219 1 2249 105 3 0 chr11 77849273 77849567 -72933986 + AluSp SINE Alu 1 295 -18 1888 168 7 0 chr11 77849579 77849871 -72933682 + AluJb SINE Alu 1 294 -18 2345 107 0 0 chr11 77849873 77850183 -72933370 + AluSq SINE Alu 1 310 -3 21 57 0 0 chr11 77850224 77850259 -72933294 + AT_rich Low_complexity Low_complexity 1 35 0 2325 74 0 0 chr11 77850298 77850608 -72932945 - AluY SINE Alu 0 310 1 327 347 36 31 chr11 77850794 77850987 -72932566 - MIR SINE MIR -49 213 20 221 289 22 33 chr11 77851360 77851450 -72932103 - L3b LINE CR1 -103 1480 1392 435 295 98 70 chr11 77851761 77852076 -72931477 + L2 LINE L2 2946 3269 -3 386 344 59 18 chr11 77852088 77852309 -72931244 + L3 LINE CR1 1205 1434 -143 524 312 60 69 chr11 77852403 77852720 -72930833 - L3 LINE CR1 -268 1309 996 2455 67 0 16 chr11 77852913 77853227 -72930326 - AluSc SINE Alu 0 309 1 686 290 116 72 chr11 77853230 77853747 -72929806 - L3 LINE CR1 -561 1016 477 185 80 0 0 chr11 77854139 77854164 -72929389 + L2 LINE L2 3244 3268 -4 228 211 53 13 chr11 77854242 77854318 -72929235 + L2 LINE L2 2976 3054 -218 868 158 0 0 chr11 77854630 77854769 -72928784 - FLAM_C SINE Alu -4 139 1 195 312 39 13 chr11 77855149 77855226 -72928327 - MIR SINE MIR 0 262 184 570 268 70 38 chr11 77855277 77855490 -72928063 - MIR SINE MIR -21 241 22 241 303 22 22 chr11 77855821 77855910 -72927643 - MIR SINE MIR -90 118 30 299 266 13 0 chr11 77855953 77856032 -72927521 + CT-rich Low_complexity Low_complexity 1 80 0 2273 105 0 7 chr11 77856919 77857215 -72926338 - AluSx SINE Alu -18 294 1 1238 205 94 7 chr11 77857295 77857593 -72925960 + MER33 DNA MER1_type 1 324 0 2374 90 0 7 chr11 77857619 77857918 -72925635 - AluY SINE Alu -14 297 1 215 297 109 10 chr11 77858347 77858448 -72925105 - L2 LINE L2 -19 3294 3184 1416 136 14 5 chr11 77858709 77858923 -72924630 + AluSg/x SINE Alu 86 301 -11 207 321 282 3 chr11 77858954 77859241 -72924312 - L2 LINE L2 -571 2743 2377 527 258 38 8 chr11 77859890 77860022 -72923531 + L2 LINE L2 3137 3272 0 182 303 76 0 chr11 77860121 77860187 -72923366 - MIR SINE MIR -70 192 122 556 223 116 0 chr11 77860190 77860311 -72923242 - L2 LINE L2 -2 3270 3136 400 221 160 40 chr11 77860572 77860753 -72922800 + MIR SINE MIR 14 221 -41 2398 65 3 17 chr11 77860853 77861147 -72922406 - AluY SINE Alu -21 290 1 1273 174 84 45 chr11 77861162 77861449 -72922104 - AluJb SINE Alu -14 298 1 601 214 0 8 chr11 77861460 77861586 -72921967 - LTR44 LTR ERV1 -183 336 212 630 176 112 0 chr11 77861604 77861729 -72921824 + AluSg/x SINE Alu 162 300 -12 730 241 31 5 chr11 77861764 77861955 -72921598 - MIR SINE MIR -1 261 66 203 250 100 38 chr11 77861958 77862038 -72921515 + MIR SINE MIR 65 149 -113 280 319 22 0 chr11 77862161 77862252 -72921301 + L3 LINE CR1 1435 1527 -50 21 36 0 0 chr11 77862317 77862345 -72921208 + AT_rich Low_complexity Low_complexity 1 28 0 2159 127 7 0 chr11 77862445 77862745 -72920808 - AluSg SINE Alu -8 302 1 2127 128 7 13 chr11 77863257 77863563 -72919990 - AluJb SINE Alu -8 304 1 2537 84 3 0 chr11 77864044 77864355 -72919198 + AluSp SINE Alu 1 312 -1 224 209 0 30 chr11 77864371 77864438 -72919115 + GA-rich Low_complexity Low_complexity 4 68 0 2057 162 3 0 chr11 77864460 77864763 -72918790 + AluSx SINE Alu 1 304 -8 28 0 0 0 chr11 77864763 77864791 -72918762 + AT_rich Low_complexity Low_complexity 1 28 0 402 188 0 0 chr11 77864857 77864926 -72918627 - FRAM/FAM SINE Alu -115 70 2 2046 132 3 55 chr11 77864969 77865296 -72918257 + AluJo SINE Alu 1 310 -2 26 30 0 0 chr11 77865621 77865654 -72917899 + AT_rich Low_complexity Low_complexity 1 33 0 588 83 25 133 chr11 77865654 77865774 -72917779 - U6 snRNA snRNA 0 107 1 187 264 28 56 chr11 77865781 77865853 -72917700 - MIR SINE MIR -122 140 71 1092 164 0 0 chr11 77865870 77866041 -72917512 - AluSg/x SINE Alu -5 307 137 2235 98 3 3 chr11 77866156 77866453 -72917100 - AluSx SINE Alu -15 297 1 184 229 0 0 chr11 77867114 77867149 -72916404 + MIR SINE MIR 69 103 -159 774 155 16 0 chr11 77867207 77867336 -72916217 + AluJo SINE Alu 1 131 -171 236 151 0 19 chr11 77867341 77867394 -72916159 + (TA)n Simple_repeat Simple_repeat 2 53 0 1107 169 17 6 chr11 77867442 77867620 -72915933 + AluJo SINE Alu 120 299 -13 334 268 101 34 chr11 77868352 77868532 -72915021 - MIR SINE MIR -66 142 9 180 0 0 0 chr11 77868834 77868854 -72914699 + (T)n Simple_repeat Simple_repeat 1 20 0 887 74 116 16 chr11 77868854 77868975 -72914578 - AluSq/x SINE Alu -179 133 1 1097 221 29 21 chr11 77869028 77869308 -72914245 - AluJo SINE Alu -30 282 1 859 117 0 29 chr11 77869891 77870028 -72913525 + FLAM_C SINE Alu 1 133 0 2332 106 0 10 chr11 77870567 77870879 -72912674 + AluY SINE Alu 1 309 -2 1209 201 5 5 chr11 77871586 77871810 -72911743 + MER58A DNA MER1_type 1 224 0 1689 170 0 59 chr11 77872602 77872925 -72910628 + AluJo SINE Alu 1 304 -8 1977 111 39 29 chr11 77873151 77873462 -72910091 - AluSx SINE Alu 0 314 1 24 53 0 0 chr11 77873903 77873941 -72909612 + AT_rich Low_complexity Low_complexity 1 38 0 652 147 0 0 chr11 77873954 77874063 -72909490 - MER58 DNA MER1_type -6 2414 2306 249 245 151 0 chr11 77874503 77874556 -72908997 - MER58 DNA MER1_type -272 69 9 2171 124 19 16 chr11 77874955 77875326 -72908227 + L1PA16 LINE L1 5795 6166 0 451 341 95 38 chr11 77875410 77875885 -72907668 - L2 LINE L2 -3 3310 2809 1397 148 115 50 chr11 77875920 77876198 -72907355 + AluJo SINE Alu 1 296 -16 2102 142 50 76 chr11 77876198 77876683 -72906870 + MER6 DNA MER2_type 394 865 0 221 371 63 6 chr11 77876684 77876843 -72906710 - L2 LINE L2 -769 2545 2378 2541 166 61 2 chr11 77877315 77877856 -72905697 - L1MB4 LINE L1 -35 6145 5573 357 258 92 60 chr11 77877848 77877922 -72905631 - L1ME LINE L1 -390 5731 5661 * 2530 60 0 0 chr11 77877922 77878220 -72905333 - AluY SINE Alu -13 298 1 357 258 92 60 chr11 77878220 77878362 -72905191 - L1ME LINE L1 -460 5661 5508 489 272 59 35 chr11 77879318 77879487 -72904066 - MIR SINE MIR -60 202 30 246 128 0 0 chr11 77881274 77881313 -72902240 + (TG)n Simple_repeat Simple_repeat 1 39 0 384 169 26 13 chr11 77882706 77882783 -72900770 + MER96 DNA MER1_type? 97 174 -1 248 247 43 65 chr11 77883721 77883814 -72899739 + MIR3 SINE MIR 72 162 -46 211 195 0 24 chr11 77888599 77888640 -72894913 + GA-rich Low_complexity Low_complexity 2 41 0 408 232 133 20 chr11 77890535 77890739 -72892814 - MIR3 SINE MIR -34 228 4 277 268 122 43 chr11 77891029 77891193 -72892360 + MIR3 SINE MIR 12 188 -20 589 219 148 14 chr11 77892023 77892257 -72891296 + MIR SINE MIR 1 260 -2 308 273 140 7 chr11 77893929 77894079 -72889474 - MIR SINE MIR -68 194 25 846 157 130 32 chr11 77894549 77894734 -72888819 + MER3 DNA MER1_type 4 206 -3 1257 124 0 11 chr11 77901132 77901309 -72882244 - AluSg/x SINE Alu -5 307 133 270 248 89 40 chr11 77901313 77901414 -72882139 - MIR SINE MIR -97 165 60 446 297 79 40 chr11 77901422 77901624 -72881929 - MIR SINE MIR 0 262 53 192 330 47 19 chr11 77903245 77903351 -72880202 + MIR SINE MIR 33 141 -67 352 290 214 10 chr11 77904213 77904503 -72879050 + L2 LINE L2 1987 2335 -979 2418 97 3 0 chr11 77904749 77905057 -72878496 + AluSx SINE Alu 1 309 -3 1837 159 13 32 chr11 77905763 77906072 -72877481 - AluJo SINE Alu -9 303 1 256 293 90 15 chr11 77906241 77906374 -72877179 + L1ME4a LINE L1 5949 6091 -30 23 0 0 0 chr11 77906739 77906762 -72876791 + AT_rich Low_complexity Low_complexity 1 23 0 311 262 122 0 chr11 77907874 77907981 -72875572 - MIR SINE MIR -38 224 105 2145 99 22 0 chr11 77909052 77909348 -72874205 - AluSg SINE Alu 0 302 1 850 153 0 0 chr11 77909462 77909586 -72873967 + AluSg/x SINE Alu 173 296 -14 193 297 93 17 chr11 77910316 77910434 -72873119 + L2 LINE L2 2985 3111 -161 28 29 0 0 chr11 77910798 77910833 -72872720 + AT_rich Low_complexity Low_complexity 1 35 0 288 208 14 14 chr11 77911445 77911517 -72872036 - L1MC5 LINE L1 -728 7233 7162 462 259 86 0 chr11 77911549 77911711 -72871842 + L1MC5 LINE L1 7264 7439 -522 214 324 67 19 chr11 77912328 77912433 -72871120 - L2 LINE L2 -5 3267 3158 273 29 0 0 chr11 77912609 77912643 -72870910 + (A)n Simple_repeat Simple_repeat 1 34 0 243 0 0 0 chr11 77912829 77912856 -72870697 + (A)n Simple_repeat Simple_repeat 1 27 0 2191 116 3 25 chr11 77914430 77914749 -72868804 + AluJb SINE Alu 1 312 0 225 322 32 40 chr11 77915184 77915374 -72868179 + MIR SINE MIR 30 216 -46 1425 189 22 42 chr11 77915385 77915697 -72867856 + AluJo SINE Alu 1 306 -6 1699 136 0 63 chr11 77915890 77916216 -72867337 + AluJo SINE Alu 1 307 0 1487 145 6 101 chr11 77916225 77916542 -72867011 + AluJo SINE Alu 1 287 -25 24 0 0 0 chr11 77916635 77916659 -72866894 + AT_rich Low_complexity Low_complexity 1 24 0 239 290 65 0 chr11 77917256 77917363 -72866190 - L1ME4a LINE L1 -49 6072 5959 926 210 12 0 chr11 77917539 77917701 -72865852 - FAM SINE Alu -11 164 1 198 71 0 0 chr11 77917734 77917762 -72865791 + (T)n Simple_repeat Simple_repeat 1 28 0 2113 144 3 3 chr11 77917865 77918177 -72865376 - AluJb SINE Alu 0 312 1 895 152 0 0 chr11 77918244 77918376 -72865177 + AluJb SINE Alu 1 132 -180 1140 196 25 43 chr11 77918406 77918641 -72864912 + AluJo SINE Alu 65 295 -17 2392 69 3 7 chr11 77918932 77919223 -72864330 + AluSc SINE Alu 1 290 -19 23 0 0 0 chr11 77919352 77919375 -72864178 + AT_rich Low_complexity Low_complexity 1 23 0 2014 146 0 0 chr11 77919375 77919662 -72863891 - AluJb SINE Alu -25 287 1 2273 82 3 16 chr11 77919912 77920215 -72863338 - AluSx SINE Alu -13 299 1 426 262 126 26 chr11 77920811 77921002 -72862551 + MIR SINE MIR 40 249 -13 183 302 0 0 chr11 77921553 77921616 -72861937 - L2 LINE L2 -73 3199 3137 2569 59 0 3 chr11 77921730 77922033 -72861520 + AluY SINE Alu 2 303 -8 627 14 0 0 chr11 77924945 77925017 -72858536 + (CA)n Simple_repeat Simple_repeat 2 73 0 249 178 0 0 chr11 77926758 77926803 -72856750 - L2 LINE L2 -6 3307 3263 1173 143 74 37 chr11 77927355 77927571 -72855982 + AluJo SINE Alu 6 229 -83 523 54 413 11 chr11 77927727 77927819 -72855734 + AluJb SINE Alu 5 133 -179 195 42 0 0 chr11 77927860 77927884 -72855669 + (T)n Simple_repeat Simple_repeat 1 24 0 949 88 0 51 chr11 77927984 77928121 -72855432 + AluSg/x SINE Alu 162 291 -19 652 250 6 12 chr11 77928300 77928460 -72855093 + MIR SINE MIR 2 160 -102 889 198 0 12 chr11 77928463 77928625 -72854928 - AluJo SINE Alu -152 160 1 361 316 73 0 chr11 77928653 77928789 -72854764 + L2 LINE L2 3167 3312 -1 1864 143 58 12 chr11 77929082 77929411 -72854142 - MER2 DNA MER2_type 0 344 1 2145 121 0 7 chr11 77929523 77929821 -72853732 + AluSq SINE Alu 1 296 -17 278 301 40 75 chr11 77929846 77930045 -72853508 - MIR SINE MIR -69 193 2 466 304 25 12 chr11 77930612 77930773 -72852780 - MIR SINE MIR -80 182 20 731 150 122 0 chr11 77930873 77931020 -72852533 + L1ME3A LINE L1 5993 6157 -13 1519 179 9 61 chr11 77931036 77931172 -72852381 + AluJo SINE Alu 1 142 -170 1995 157 16 0 chr11 77931172 77931298 -72852255 + AluSx SINE Alu 1 123 -189 330 26 0 0 chr11 77931298 77931337 -72852216 + (CA)n Simple_repeat Simple_repeat 2 40 0 1995 157 16 0 chr11 77931337 77931515 -72852038 + AluSx SINE Alu 123 310 -2 1519 179 9 61 chr11 77931515 77931664 -72851889 + AluJo SINE Alu 142 269 -43 2142 122 7 0 chr11 77931664 77931958 -72851595 - AluSq SINE Alu -17 296 1 1519 179 9 61 chr11 77931958 77932000 -72851553 + AluJo SINE Alu 269 312 0 350 210 62 12 chr11 77932332 77932413 -72851140 - HsTC2 DNA Tc2 -67 1831 29 2284 115 0 3 chr11 77932801 77933114 -72850439 + AluSx SINE Alu 1 312 0 2145 110 3 3 chr11 77933127 77933419 -72850134 + AluSq SINE Alu 1 292 -21 431 288 68 9 chr11 77933688 77933907 -72849646 - L1MC4a LINE L1 -1900 5908 5677 632 299 79 50 chr11 77934524 77934625 -72848928 - L1MC4a LINE L1 -1897 5911 5814 1847 157 29 0 chr11 77934625 77934906 -72848647 - AluJb SINE Alu -22 290 2 632 299 79 50 chr11 77934906 77935346 -72848207 - L1MC4a LINE L1 -1994 5814 5354 915 211 78 20 chr11 77935492 77935696 -72847857 + MER58A DNA MER1_type 1 216 -8 1557 201 3 24 chr11 77935699 77935993 -72847560 + AluJb SINE Alu 7 294 -18 1327 142 5 31 chr11 77936024 77936127 -72847426 + AluJo SINE Alu 3 107 -205 2174 87 10 20 chr11 77936127 77936426 -72847127 + AluSc SINE Alu 1 296 -13 1327 142 5 31 chr11 77936426 77936594 -72846959 + AluJo SINE Alu 107 299 -13 243 88 0 0 chr11 77936815 77936849 -72846704 + (T)n Simple_repeat Simple_repeat 1 34 0 478 232 112 77 chr11 77937045 77937258 -72846295 + L1ME4a LINE L1 5601 5805 -316 1831 139 7 55 chr11 77937258 77937567 -72845986 + AluJo SINE Alu 1 294 -18 478 232 112 77 chr11 77937567 77937633 -72845920 + L1ME4a LINE L1 5805 5867 -254 2179 135 0 0 chr11 77937633 77937937 -72845616 + AluJb SINE Alu 1 304 -8 478 232 112 77 chr11 77937937 77937996 -72845557 + L1ME4a LINE L1 5867 5952 -169 273 244 143 34 chr11 77938053 77938172 -72845381 + L1ME4a LINE L1 5947 6078 -43 313 290 11 0 chr11 77938205 77938298 -72845255 + L1ME4a LINE L1 5608 5701 -420 644 236 119 39 chr11 77938455 77938765 -72844788 + L1ME4a LINE L1 5785 6119 -2 2430 64 27 0 chr11 77939107 77939403 -72844150 + AluSp SINE Alu 1 304 -9 289 346 86 10 chr11 77939419 77939741 -72843812 + L2 LINE L2 2704 3051 -221 2266 109 0 3 chr11 77941421 77941724 -72841829 + AluSx SINE Alu 1 302 -10 798 261 145 31 chr11 77941778 77942130 -72841423 + MARNA DNA Mariner 19 410 -176 455 318 17 12 chr11 77942290 77942463 -72841090 - MIR3 SINE MIR -2 206 33 273 254 9 41 chr11 77943549 77943609 -72839944 - Charlie8 DNA MER1_type 0 2417 2357 1282 159 156 4 chr11 77943609 77943866 -72839687 + AluJb SINE Alu 1 296 -6 273 254 9 41 chr11 77943866 77943922 -72839631 - Charlie8 DNA MER1_type -60 2357 232 203 276 102 10 chr11 77943949 77944047 -72839506 - MIR SINE MIR -61 201 95 1050 225 177 40 chr11 77944440 77944964 -72838589 + L1MC4 LINE L1 7327 8041 -1 2386 43 40 23 chr11 77945856 77946160 -72837393 + AluY SINE Alu 1 309 -2 288 0 0 0 chr11 77946287 77946319 -72837234 + (TG)n Simple_repeat Simple_repeat 2 33 0 1020 201 201 74 chr11 77947071 77947515 -72836038 - MLT1H LTR MaLR -6 543 44 223 250 36 0 chr11 77947940 77947996 -72835557 - L2 LINE L2 0 3272 3215 26 30 0 0 chr11 77948753 77948786 -72834767 + GC_rich Low_complexity Low_complexity 1 33 0 1805 114 15 7 chr11 77949441 77949714 -72833839 + AluJb SINE Alu 1 275 -37 326 23 0 23 chr11 77949721 77949765 -72833788 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 573 204 51 12 chr11 77950145 77950337 -72833216 - MIR3 SINE MIR -51 211 11 504 310 76 49 chr11 77950627 77951037 -72832516 + L2 LINE L2 2116 2536 -778 2486 77 3 0 chr11 77951165 77951465 -72832088 - AluSp SINE Alu -12 301 1 270 300 50 79 chr11 77951488 77951765 -72831788 + L2 LINE L2 2811 3079 -193 316 362 164 22 chr11 77951826 77952094 -72831459 - L2 LINE L2 -20 3252 2947 1160 133 12 0 chr11 77952298 77952464 -72831089 - FRAM SINE Alu -11 165 1 1973 164 0 0 chr11 77952855 77953153 -72830400 + AluJb SINE Alu 1 298 -14 1109 141 0 0 chr11 77953259 77953415 -72830138 + AluSg/x SINE Alu 144 299 -13 222 226 0 48 chr11 77953423 77953485 -72830068 + MIR SINE MIR 201 259 -3 1758 164 46 0 chr11 77953515 77953795 -72829758 + AluJo SINE Alu 1 293 -19 2247 107 0 0 chr11 77953797 77954122 -72829431 + AluSx SINE Alu 1 312 0 388 195 13 0 chr11 77954142 77954219 -72829334 + L1MEd LINE L1 27 104 -6015 903 252 147 17 chr11 77954220 77954831 -72828722 + LTR50 LTR ERVL 1 523 0 430 283 251 12 chr11 77954837 77955084 -72828469 + L1MEd LINE L1 110 415 -5704 1859 149 0 14 chr11 77955141 77955454 -72828099 + AluJb SINE Alu 1 309 0 416 187 37 134 chr11 77955454 77955553 -72828000 + L1ME1 LINE L1 5932 6009 -157 2156 116 7 0 chr11 77955553 77955846 -72827707 + AluSp SINE Alu 1 295 -18 416 187 37 134 chr11 77955846 77955933 -72827620 + L1ME1 LINE L1 6009 6103 -63 611 260 109 56 chr11 77955968 77956582 -72826971 + L1MEd LINE L1 855 1602 -888 2479 82 0 0 chr11 77956582 77956886 -72826667 + AluY SINE Alu 1 304 -7 611 260 109 56 chr11 77956886 77956910 -72826643 + L1MEd LINE L1 1602 1623 -867 519 148 8 107 chr11 77957100 77957222 -72826331 - FLAM_A SINE Alu -32 110 1 595 100 0 0 chr11 77957383 77957463 -72826090 + MADE1 DNA Mariner 1 80 0 2360 79 0 0 chr11 77958309 77958601 -72824952 + AluSg1 SINE Alu 1 292 -17 1020 86 0 60 chr11 77959456 77959607 -72823946 - FRAM SINE Alu 0 176 35 741 119 106 38 chr11 77959823 77960089 -72823464 + MER33 DNA MER1_type 1 323 -1 347 271 107 16 chr11 77960829 77960951 -72822602 + MIR3 SINE MIR 4 136 -72 263 100 25 0 chr11 77961523 77961563 -72821990 - MER4E LTR ERV1 -72 707 667 187 290 32 16 chr11 77962843 77962905 -72820648 - L3 LINE CR1 -1 1576 1514 188 348 70 17 chr11 77963051 77963166 -72820387 - L3 LINE CR1 -299 1278 1158 855 110 0 0 chr11 77963928 77964037 -72819516 - AluJb SINE Alu -187 125 17 416 288 323 25 chr11 77964043 77964830 -72818723 + L2 LINE L2 1820 2840 -474 312 324 80 6 chr11 77964873 77965049 -72818504 + L2 LINE L2 2899 3087 -185 208 240 0 20 chr11 77965174 77965224 -72818329 + L2 LINE L2 3177 3225 -47 652 251 40 40 chr11 77965970 77966169 -72817384 + MIR SINE MIR 8 206 -56 2528 62 0 10 chr11 77966172 77966476 -72817077 + AluSc SINE Alu 3 303 -6 1348 143 50 99 chr11 77967833 77968008 -72815545 - AluSx SINE Alu -6 306 153 180 0 0 0 chr11 77968008 77968028 -72815525 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1348 143 50 99 chr11 77968028 77968174 -72815379 - AluSx SINE Alu -159 153 1 2164 71 0 0 chr11 77968176 77968428 -72815125 - AluY SINE Alu -19 292 41 422 78 16 16 chr11 77968428 77968492 -72815061 - AluSq/x SINE Alu -172 141 78 1357 171 5 0 chr11 77968492 77968703 -72814850 - AluSx SINE Alu -100 212 1 255 332 17 20 chr11 77970099 77970311 -72813242 + GA-rich Low_complexity Low_complexity 1 211 0 1610 197 14 7 chr11 77972147 77972441 -72811112 + AluJo SINE Alu 1 296 -16 276 352 33 22 chr11 77972595 77972777 -72810776 - L3 LINE CR1 -788 789 606 195 224 35 17 chr11 77973252 77973310 -72810243 + L3 LINE CR1 1427 1485 -92 10552 92 9 21 chr11 77975421 77976962 -72806591 + HERVE LTR ERV1 3423 4944 -2869 1953 191 83 22 chr11 77976969 77978034 -72805519 - SATR1 Satellite Satellite 0 1129 1 2171 100 0 4 chr11 77978044 77978323 -72805230 + AluSc SINE Alu 27 304 -5 1339 143 50 100 chr11 77979683 77979857 -72803696 - AluSx SINE Alu -7 305 153 180 0 0 0 chr11 77979857 77979877 -72803676 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1339 143 50 100 chr11 77979877 77980023 -72803530 - AluSx SINE Alu -159 153 1 2169 68 0 0 chr11 77980025 77980276 -72803277 - AluY SINE Alu -20 291 41 422 78 16 16 chr11 77980276 77980340 -72803213 - AluSq/x SINE Alu -171 141 78 1357 171 5 0 chr11 77980340 77980551 -72803002 - AluSx SINE Alu -100 212 1 255 332 17 20 chr11 77981947 77982159 -72801394 + GA-rich Low_complexity Low_complexity 1 211 0 314 241 0 0 chr11 77983996 77984054 -72799499 + AluJ/FLAM SINE Alu 2 59 -243 1250 179 53 20 chr11 77984189 77984435 -72799118 - AluJb SINE Alu -7 305 52 484 259 6 64 chr11 77984627 77984765 -72798788 + MER72-int LTR ERV1 4321 4465 -2211 1981 164 13 0 chr11 77984765 77985064 -72798489 + AluJb SINE Alu 1 303 -9 484 259 6 64 chr11 77985064 77985137 -72798416 + MER72-int LTR ERV1 4465 6296 -380 1677 121 67 3 chr11 77985186 77985468 -72798085 + AluSx SINE Alu 1 300 -12 2121 129 20 0 chr11 77985546 77985848 -72797705 + AluSx SINE Alu 1 308 -4 827 218 70 0 chr11 77985951 77986180 -72797373 + MER72-int LTR ERV1 6533 6757 -1 1353 223 17 81 chr11 77986180 77986625 -72796928 + MER72 LTR ERV1 1 402 -269 833 151 0 8 chr11 77986625 77986744 -72796809 + FLAM_C SINE Alu 1 118 -25 27 49 0 0 chr11 77986744 77986785 -72796768 + AT_rich Low_complexity Low_complexity 1 41 0 1266 208 76 0 chr11 77986786 77987074 -72796479 + MER49 LTR ERV1 614 923 0 301 205 36 24 chr11 77987169 77987252 -72796301 + MER46C DNA MER2_type 253 336 -2 507 139 7 6 chr11 77987271 77987410 -72796143 + MER30 DNA MER1_type 2 229 -1 2469 46 0 3 chr11 77987451 77987761 -72795792 - AluY SINE Alu 0 309 1 3270 93 45 33 chr11 77987761 77987959 -72795594 - MER41-int LTR ERV1 -605 5341 5147 2074 106 11 7 chr11 77987959 77988266 -72795287 + AluSg SINE Alu 1 308 0 3270 93 45 33 chr11 77988266 77988581 -72794972 - MER41-int LTR ERV1 -799 5147 4821 1089 108 7 0 chr11 77988581 77988720 -72794833 + AluSq/x SINE Alu 1 140 -173 2796 136 26 32 chr11 77988732 77989154 -72794399 + MER72-int LTR ERV1 2017 2500 -3446 2257 121 3 0 chr11 77989154 77989459 -72794094 - AluSx SINE Alu -6 306 1 2796 136 26 32 chr11 77989459 77989612 -72793941 + MER72-int LTR ERV1 2500 2652 -3294 1090 128 0 0 chr11 77989627 77989776 -72793777 + AluSg/x SINE Alu 164 312 0 469 235 8 25 chr11 77989931 77990050 -72793503 - L1MC/D LINE L1 -2282 5526 5410 1246 194 107 9 chr11 77990164 77990483 -72793070 - L1MC4 LINE L1 -460 7582 7233 375 263 15 51 chr11 77990903 77991040 -72792513 + L2 LINE L2 3163 3294 -19 1309 251 80 69 chr11 77992248 77992642 -72790911 + MER72 LTR ERV1 1 404 -318 2439 87 0 0 chr11 77992642 77992940 -72790613 - AluSx SINE Alu -12 300 3 1309 251 80 69 chr11 77992940 77993107 -72790446 + MER72 LTR ERV1 404 568 -154 2173 128 16 0 chr11 77993159 77993464 -72790089 + AluSx SINE Alu 1 310 -2 189 107 0 0 chr11 77993467 77993495 -72790058 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 324 0 0 0 chr11 77994152 77994188 -72789365 + (TG)n Simple_repeat Simple_repeat 1 36 0 1284 169 0 46 chr11 77994188 77994425 -72789128 - AluJb SINE Alu -33 279 54 2060 161 0 0 chr11 77994756 77995067 -72788486 + AluJb SINE Alu 1 311 -1 878 169 18 42 chr11 77995067 77995233 -72788320 + AluSg/x SINE Alu 137 298 -14 2338 86 10 19 chr11 77995253 77995566 -72787987 + AluSx SINE Alu 1 310 -2 863 233 127 5 chr11 77995709 77996052 -72787501 + MER72-int LTR ERV1 6369 6757 -1 752 221 36 68 chr11 77996052 77996073 -72787480 + MER72 LTR ERV1 1 21 -701 2428 103 0 0 chr11 77996073 77996384 -72787169 + AluSx SINE Alu 2 312 0 752 221 36 68 chr11 77996384 77996611 -72786942 + MER72 LTR ERV1 21 241 -481 191 86 0 29 chr11 77996639 77996674 -72786879 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1978 149 20 3 chr11 77996688 77996984 -72786569 - AluJb SINE Alu -11 301 1 569 250 6 51 chr11 77996994 77997147 -72786406 + LTR51 LTR ERV1 230 376 -295 2543 52 0 23 chr11 77997147 77997453 -72786100 - AluY SINE Alu -12 299 1 569 250 6 51 chr11 77997453 77997475 -72786078 + LTR51 LTR ERV1 376 397 -274 916 120 0 0 chr11 77997480 77997597 -72785956 + FLAM_C SINE Alu 1 117 -26 2179 97 11 4 chr11 77997619 77997897 -72785656 - AluSx SINE Alu -32 280 1 24 0 0 0 chr11 77997906 77997930 -72785623 + AT_rich Low_complexity Low_complexity 1 24 0 2160 129 0 16 chr11 77997930 77998240 -72785313 + AluSx SINE Alu 1 305 -7 2198 109 0 3 chr11 77998242 77998563 -72784990 + AluSx SINE Alu 1 320 0 1280 199 77 0 chr11 77998563 77998850 -72784703 + MER49 LTR ERV1 615 923 0 226 176 11 121 chr11 77999591 77999682 -72783871 + MIR3 SINE MIR 104 184 -24 255 271 31 62 chr11 78000116 78000245 -72783308 - MIR3 SINE MIR -79 129 5 2330 108 3 0 chr11 78001600 78001895 -72781658 - AluSx SINE Alu -16 296 1 299 214 10 39 chr11 78001897 78002000 -72781553 + MER46C DNA MER2_type 61 160 -178 741 150 8 0 chr11 78002996 78003116 -72780437 - FLAM_C SINE Alu -9 134 14 1773 164 36 13 chr11 78003286 78003591 -72779962 + AluJb SINE Alu 1 312 0 227 137 0 68 chr11 78003591 78003664 -72779889 + (GGGA)n Simple_repeat Simple_repeat 1 68 0 2121 97 49 3 chr11 78003679 78003838 -72779715 - AluSq SINE Alu -12 301 122 194 0 0 37 chr11 78003838 78003865 -72779688 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2121 97 49 3 chr11 78003865 78003993 -72779560 - AluSq SINE Alu -191 122 1 2009 126 7 18 chr11 78004005 78004320 -72779233 - AluSx SINE Alu 0 312 1 959 155 121 9 chr11 78004348 78004580 -72778973 - LTR23 LTR ERV1 -38 399 142 1388 113 0 22 chr11 78004582 78004630 -72778923 - AluSq SINE Alu -132 181 133 2546 73 0 0 chr11 78004630 78004932 -72778621 - AluY SINE Alu -9 302 1 1388 113 0 22 chr11 78004932 78005068 -72778485 - AluSq SINE Alu -180 133 1 227 264 46 46 chr11 78005199 78005286 -72778267 + L2 LINE L2 3227 3313 0 1343 212 13 50 chr11 78006790 78006949 -72776604 - AluJo SINE Alu -17 295 151 2418 84 7 0 chr11 78006949 78007246 -72776307 - AluSp SINE Alu -14 299 1 1343 212 13 50 chr11 78007246 78007388 -72776165 - AluJo SINE Alu -161 151 5 1702 134 13 0 chr11 78007389 78007627 -72775926 - AluSx SINE Alu -71 241 1 2378 108 0 0 chr11 78007919 78008226 -72775327 + AluSx SINE Alu 1 307 -5 234 91 0 0 chr11 78008345 78008378 -72775175 + (A)n Simple_repeat Simple_repeat 1 33 0 2343 105 0 19 chr11 78008395 78008709 -72774844 - AluSq SINE Alu -5 308 1 5815 120 27 64 chr11 78008712 78008855 -72774698 - MER41B-int LTR ERV1 -998 4017 3870 2903 10 0 0 chr11 78008855 78009163 -72774390 - AluYb8 SINE Alu -10 308 1 5815 120 27 64 chr11 78009163 78009543 -72774010 - MER41B-int LTR ERV1 -1145 3870 3477 2246 121 3 0 chr11 78009543 78009848 -72773705 + AluSx SINE Alu 5 310 -2 5815 120 27 64 chr11 78009848 78010522 -72773031 - MER41B-int LTR ERV1 -1538 3477 2864 4514 136 21 29 chr11 78010518 78010722 -72772831 - MER41B-int LTR ERV1 -3000 2946 2742 * 2386 92 0 0 chr11 78010722 78011026 -72772527 - AluY SINE Alu -7 304 1 4514 136 21 29 chr11 78011026 78011761 -72771792 - MER41B-int LTR ERV1 -3204 2742 1951 3552 123 71 20 chr11 78011746 78012221 -72771332 - MER41B-int LTR ERV1 -4171 1775 1261 * 5834 62 30 3 chr11 78012221 78012980 -72770573 + LTR17 LTR ERV1 1 780 0 3552 123 71 20 chr11 78012980 78013106 -72770447 - MER41B-int LTR ERV1 -4685 1261 1143 * 3782 131 41 3 chr11 78013099 78013686 -72769867 - MER41B-int LTR ERV1 -5337 609 1 4217 117 19 13 chr11 78013686 78014317 -72769236 - MER41B LTR ERV1 0 635 1 928 116 23 0 chr11 78014657 78014786 -72768767 - FLAM_C SINE Alu -1 132 1 31 0 0 60 chr11 78015134 78015164 -72768389 + AT_rich Low_complexity Low_complexity 1 28 -19 753 209 8 0 chr11 78015164 78015293 -72768260 - FLAM_C SINE Alu -1 132 3 31 0 0 60 chr11 78015293 78015312 -72768241 + AT_rich Low_complexity Low_complexity 28 47 0 2007 129 56 3 chr11 78015361 78015718 -72767835 - LTR23 LTR ERV1 -61 376 1 212 254 55 0 chr11 78015748 78015803 -72767750 - L2 LINE L2 -1 3312 3255 3705 113 34 40 chr11 78015851 78016439 -72767114 + MER4E LTR ERV1 2 587 -192 2266 104 0 3 chr11 78016439 78016736 -72766817 - AluSg SINE Alu -14 296 1 3705 113 34 40 chr11 78016736 78016794 -72766759 + MER4E LTR ERV1 587 644 -135 202 219 61 61 chr11 78016838 78016920 -72766633 + L2 LINE L2 3232 3313 0 1708 203 0 0 chr11 78018370 78018665 -72764888 - AluJo SINE Alu -17 295 1 616 171 124 0 chr11 78018703 78018808 -72764745 - FLAM_C SINE Alu -24 119 2 236 140 180 0 chr11 78018907 78018957 -72764596 - MLT1J1 LTR MaLR -123 323 265 392 200 110 10 chr11 78019009 78019109 -72764444 - MLT1I LTR MaLR -261 148 39 1838 162 0 23 chr11 78019353 78019661 -72763892 - AluJb SINE Alu -1 311 11 2030 233 18 25 chr11 78019671 78020651 -72762902 + L1MD3 LINE L1 5082 5717 -461 1968 148 3 13 chr11 78020811 78021116 -72762437 + AluJb SINE Alu 1 302 -10 1916 158 52 12 chr11 78021136 78021466 -72762087 - MER61A LTR ERV1 0 343 1 6305 101 53 26 chr11 78021466 78022287 -72761266 - MER61A-int LTR ERV1 0 5217 4420 2164 130 0 3 chr11 78022287 78022588 -72760965 + AluSg SINE Alu 1 300 -10 6305 101 53 26 chr11 78022588 78022667 -72760886 - MER61A-int LTR ERV1 -797 4420 4345 8467 57 1 0 chr11 78022667 78023635 -72759918 + LTR5 LTR ERVK 1 969 0 6305 101 53 26 chr11 78023635 78023733 -72759820 - MER61A-int LTR ERV1 -872 4345 4191 216 0 0 0 chr11 78023733 78023757 -72759796 + (T)n Simple_repeat Simple_repeat 1 24 0 183 317 67 43 chr11 78024419 78024583 -72758970 + L2 LINE L2 2622 2789 -525 543 134 72 0 chr11 78024596 78024693 -72758860 + U13 snRNA snRNA 1 104 0 559 183 58 17 chr11 78024951 78025071 -72758482 - L2 LINE L2 0 3313 3189 202 337 50 10 chr11 78025073 78025174 -72758379 + L2 LINE L2 3107 3211 -61 434 237 156 22 chr11 78026250 78026385 -72757168 + MIR SINE MIR 1 153 -109 272 248 30 50 chr11 78026796 78026897 -72756656 + MIR3 SINE MIR 67 165 -43 * 293 234 31 0 chr11 78026891 78026955 -72756598 - L2 LINE L2 -2 3270 3205 2205 138 0 0 chr11 78027187 78027491 -72756062 + AluJb SINE Alu 7 310 -2 1995 159 0 3 chr11 78027506 78027807 -72755746 + AluJb SINE Alu 1 300 -12 272 380 57 26 chr11 78027925 78028154 -72755399 - L2 LINE L2 -227 3045 2810 482 287 74 46 chr11 78028838 78029054 -72754499 + MIR SINE MIR 17 238 -24 485 285 42 24 chr11 78029661 78029826 -72753727 + MIR3 SINE MIR 18 185 -23 252 239 0 0 chr11 78030673 78030744 -72752809 + (CAT)n Simple_repeat Simple_repeat 2 72 0 182 289 19 0 chr11 78031423 78031475 -72752078 + MIR3 SINE MIR 9 61 -147 813 203 11 28 chr11 78031920 78032097 -72751456 + MIR SINE MIR 35 208 -54 203 267 0 0 chr11 78032396 78032441 -72751112 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 201 280 0 0 chr11 78032529 78032579 -72750974 - MIR SINE MIR -82 126 77 274 264 132 9 chr11 78033703 78033809 -72749744 - L2 LINE L2 -33 3239 3121 231 254 65 94 chr11 78034130 78034268 -72749285 + MIR SINE MIR 59 192 -70 1155 263 66 32 chr11 78034385 78034792 -72748761 - L2 LINE L2 -1 3312 2892 2140 233 146 25 chr11 78034803 78035510 -72748043 - L2 LINE L2 -548 2766 1975 296 216 149 0 chr11 78035540 78035614 -72747939 + L2 LINE L2 3136 3220 -52 344 297 127 84 chr11 78035825 78036252 -72747301 - L2 LINE L2 -17 3255 2811 310 277 0 12 chr11 78036846 78036933 -72746620 - MIR SINE MIR -61 147 63 369 219 83 21 chr11 78037066 78037162 -72746391 + L2 LINE L2 3199 3300 -13 247 299 0 24 chr11 78037327 78037418 -72746135 - L2 LINE L2 -292 2980 2894 182 276 73 73 chr11 78037416 78037539 -72746014 - L2 LINE L2 -18 3254 3132 * 1723 185 78 37 chr11 78038172 78038530 -72745023 + MLT1D LTR MaLR 2 383 -122 2294 84 37 0 chr11 78038530 78038827 -72744726 - AluSx SINE Alu -4 308 1 1723 185 78 37 chr11 78038827 78038901 -72744652 + MLT1D LTR MaLR 383 452 -53 337 164 0 0 chr11 78038901 78038956 -72744597 + FRAM/FAM SINE Alu 1 55 -120 3284 106 163 5 chr11 78038958 78039120 -72744433 - MER51D LTR ERV1 0 657 522 477 0 0 0 chr11 78039120 78039173 -72744380 + (TG)n Simple_repeat Simple_repeat 2 54 0 3284 106 163 5 chr11 78039173 78039574 -72743979 - MER51D LTR ERV1 -135 522 5 471 145 0 0 chr11 78039598 78039667 -72743886 + FLAM SINE Alu 53 121 -22 418 153 0 0 chr11 78039676 78039748 -72743805 + MLT1D LTR MaLR 434 505 0 873 145 69 0 chr11 78040038 78040197 -72743356 + L1MB3 LINE L1 5845 6014 -169 2271 57 46 0 chr11 78040264 78040545 -72743008 + AluY SINE Alu 1 294 -17 817 194 236 0 chr11 78040557 78040748 -72742805 - MER8 DNA MER2_type -3 236 1 641 156 35 52 chr11 78040748 78040801 -72742752 + L1MB3 LINE L1 6014 6066 -117 2061 158 0 0 chr11 78040801 78041099 -72742454 + AluJb SINE Alu 3 300 -12 641 156 35 52 chr11 78041099 78041218 -72742335 + L1MB3 LINE L1 6066 6183 0 324 277 307 13 chr11 78041352 78041652 -72741901 + L2 LINE L2 2550 2937 -377 2293 81 3 20 chr11 78041754 78042050 -72741503 - AluSp SINE Alu -22 291 1 2416 129 42 18 chr11 78042051 78042502 -72741051 - L1MB3 LINE L1 -42 6141 5680 398 205 51 0 chr11 78042581 78042659 -72740894 + L2 LINE L2 3191 3272 0 388 338 63 39 chr11 78042713 78042792 -72740761 + MIR SINE MIR 36 112 -150 2516 117 139 121 chr11 78042792 78043381 -72740172 - MER4A LTR ERV1 0 600 1 388 338 63 39 chr11 78043381 78043508 -72740045 + MIR SINE MIR 112 247 -15 1774 186 120 5 chr11 78043629 78044054 -72739499 - MLT1D LTR MaLR 0 505 32 5233 152 66 72 chr11 78044329 78045355 -72738198 - LTR28 LTR ERV1 0 1020 1 10990 149 24 32 chr11 78045356 78047084 -72736469 - LTR28-int LTR ERV1 -1 6995 5254 2218 105 3 0 chr11 78047084 78047369 -72736184 + AluSc SINE Alu 1 286 -23 10990 149 24 32 chr11 78047369 78048798 -72734755 - LTR28-int LTR ERV1 -1742 5254 2214 439 167 12 12 chr11 78048788 78048872 -72734681 - LTR28-int LTR ERV1 -5791 1746 1663 * 1165 252 140 46 chr11 78048873 78049737 -72733816 + L2 LINE L2 2341 3298 -15 340 295 16 8 chr11 78049758 78049880 -72733673 + L2 LINE L2 2562 2684 -630 1211 158 78 7 chr11 78049910 78050165 -72733388 - L1M2 LINE L1 -394 5789 5543 325 305 92 23 chr11 78050173 78050304 -72733249 + L1MC/D LINE L1 5652 5791 -2017 982 199 0 0 chr11 78050358 78050524 -72733029 + FRAM SINE Alu 1 166 0 866 217 9 18 chr11 78050587 78050808 -72732745 + L1MD3 LINE L1 7767 7985 -10 1972 136 4 0 chr11 78050851 78051151 -72732402 + AluSx SINE Alu 1 301 0 1409 166 115 11 chr11 78051261 78051539 -72732014 + AluSg1 SINE Alu 1 307 -2 246 224 0 0 chr11 78052511 78052560 -72730993 - MLT1H1 LTR MaLR -4 586 538 2449 209 76 20 chr11 78052572 78053205 -72730348 + L1MC4a LINE L1 7141 7808 0 482 206 0 0 chr11 78053222 78053314 -72730239 - MLT1H1 LTR MaLR -40 515 424 1597 191 41 3 chr11 78053785 78054207 -72729346 - AluJb SINE Alu 0 312 1 2202 116 10 3 chr11 78054847 78055141 -72728412 - AluSx SINE Alu -16 296 1 506 263 38 42 chr11 78055150 78055363 -72728190 - L1MC4a LINE L1 -1867 5941 5730 194 270 32 16 chr11 78055928 78055991 -72727562 - MIR SINE MIR -86 122 59 773 136 7 41 chr11 78056791 78056938 -72726615 - L1MB3 LINE L1 -21 6162 6021 1924 106 0 8 chr11 78057745 78058001 -72725552 - AluSp SINE Alu -11 302 49 231 255 0 0 chr11 78058105 78058152 -72725401 + L2 LINE L2 2925 2971 -342 544 269 0 31 chr11 78058181 78058311 -72725242 + L2 LINE L2 3188 3313 0 2406 76 3 0 chr11 78058340 78058630 -72724923 + AluSq SINE Alu 1 291 -22 1699 162 53 3 chr11 78058762 78059046 -72724507 + AluJo SINE Alu 4 301 -11 360 0 0 0 chr11 78060514 78060554 -72722999 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 676 209 0 0 chr11 78060560 78060670 -72722883 - FLAM_C SINE Alu -32 111 2 504 205 84 137 chr11 78060739 78060858 -72722695 - L1MC4a LINE L1 -2163 5645 5544 1923 171 0 3 chr11 78060858 78061157 -72722396 + AluJb SINE Alu 3 300 -12 504 205 84 137 chr11 78061157 78061286 -72722267 - L1MC4a LINE L1 -2264 5544 5410 1201 233 96 3 chr11 78061400 78061765 -72721788 - L1MC4 LINE L1 -460 7582 7184 396 301 55 22 chr11 78062072 78062255 -72721298 + L2 LINE L2 3106 3294 -19 223 324 128 25 chr11 78062493 78062696 -72720857 - L2 LINE L2 -270 3002 2789 1398 267 47 51 chr11 78063462 78064035 -72719518 + MER72 LTR ERV1 1 571 -151 339 164 0 15 chr11 78064045 78064112 -72719441 + MER49 LTR ERV1 848 913 -10 1248 177 53 21 chr11 78064719 78064962 -72718591 - AluJb SINE Alu -10 302 52 500 260 6 63 chr11 78065154 78065292 -72718261 + MER84-int LTR ERV1 4321 4465 -2211 1831 166 13 0 chr11 78065292 78065593 -72717960 + AluJb SINE Alu 1 305 -7 500 260 6 63 chr11 78065593 78065669 -72717884 + MER84-int LTR ERV1 4465 6299 -377 2174 87 10 7 chr11 78065715 78066014 -72717539 + AluSx SINE Alu 1 300 -12 1145 225 91 70 chr11 78066014 78066408 -72717145 - MER72 LTR ERV1 -283 388 1 215 286 120 45 chr11 78067174 78067378 -72716175 + L2 LINE L2 2789 2998 -274 397 263 15 51 chr11 78067614 78067751 -72715802 - L2 LINE L2 -19 3294 3163 1300 194 107 9 chr11 78068171 78068490 -72715063 + L1MC4 LINE L1 7233 7582 -460 481 235 8 25 chr11 78068604 78068723 -72714830 + L1MC/D LINE L1 5410 5526 -2282 1807 142 3 7 chr11 78068731 78069019 -72714534 - AluJb SINE Alu -11 301 15 378 233 167 8 chr11 78069032 78069152 -72714401 + L1MC/D LINE L1 5507 5645 -2163 2002 124 0 3 chr11 78069177 78069476 -72714077 - AluSq SINE Alu -11 302 5 2392 78 0 0 chr11 78069561 78069867 -72713686 + AluSx SINE Alu 1 306 -6 1408 81 0 0 chr11 78070034 78070219 -72713334 - AluSc SINE Alu -1 308 124 2090 104 3 0 chr11 78070220 78070509 -72713044 - AluSg SINE Alu -20 290 1 6532 76 16 12 chr11 78070510 78071383 -72712170 - MER61-int LTR ERV1 -1012 4205 3327 2196 96 3 3 chr11 78071383 78071684 -72711869 + AluSx SINE Alu 1 301 -11 2744 72 11 6 chr11 78071684 78072046 -72711507 - MER61-int LTR ERV1 -2126 3091 2728 1963 132 0 26 chr11 78072048 78072351 -72711202 - AluSx SINE Alu -17 295 1 1778 168 0 3 chr11 78072400 78072703 -72710850 - AluJo SINE Alu 0 312 11 2307 124 30 25 chr11 78072805 78073167 -72710386 + THE1B LTR MaLR 1 364 0 11938 81 8 11 chr11 78073167 78073539 -72710014 + THE1B-int LTR MaLR 1 373 -1207 1647 172 18 0 chr11 78073539 78073856 -72709697 - AluSx SINE Alu 0 322 1 11938 81 8 11 chr11 78073856 78075068 -72708485 + THE1B-int LTR MaLR 373 1580 0 2214 125 33 19 chr11 78075068 78075427 -72708126 + THE1B LTR MaLR 1 364 0 556 276 118 7 chr11 78075912 78076184 -72707369 - L1MC4a LINE L1 -1777 6031 5730 306 286 130 6 chr11 78077710 78077871 -72705682 - L2 LINE L2 -222 3050 2870 685 120 6 143 chr11 78078170 78078272 -72705281 - L1MB3 LINE L1 -1 6173 6119 2321 59 3 30 chr11 78078272 78078576 -72704977 + AluSp SINE Alu 2 297 -16 685 120 6 143 chr11 78078576 78078664 -72704889 - L1MB3 LINE L1 -55 6119 6021 200 239 22 0 chr11 78079560 78079606 -72703947 + L2 LINE L2 2926 2972 -342 522 277 0 31 chr11 78079635 78079765 -72703788 + L2 LINE L2 3188 3313 0 1570 180 10 3 chr11 78079883 78079995 -72703558 + AluJo SINE Alu 1 111 -201 7275 49 0 4 chr11 78079995 78081011 -72702542 - L1PA5 LINE L1 0 6154 5134 1570 180 10 3 chr11 78081011 78081204 -72702349 + AluJo SINE Alu 111 308 -4 2154 117 3 0 chr11 78081587 78081896 -72701657 + AluSx SINE Alu 1 310 -2 654 203 0 8 chr11 78083013 78083146 -72700407 - FLAM_C SINE Alu -1 132 1 216 0 0 0 chr11 78083149 78083173 -72700380 + (T)n Simple_repeat Simple_repeat 1 24 0 27 0 0 0 chr11 78083192 78083219 -72700334 + GC_rich Low_complexity Low_complexity 1 27 0 195 42 0 0 chr11 78083332 78083356 -72700197 + (A)n Simple_repeat Simple_repeat 1 24 0 525 236 95 125 chr11 78083565 78083632 -72699921 - MLT1I LTR MaLR -14 395 328 1290 156 53 90 chr11 78083632 78083953 -72699600 - AluJo SINE Alu -3 309 1 525 236 95 125 chr11 78083953 78084253 -72699300 - MLT1I LTR MaLR -81 328 39 2050 112 0 31 chr11 78084400 78084722 -72698831 + AluSx SINE Alu 1 312 0 1832 152 7 3 chr11 78084930 78085227 -72698326 - AluSx SINE Alu -14 298 1 1767 141 36 13 chr11 78085229 78085249 -72698304 - AluSx SINE Alu 0 312 294 423 0 0 0 chr11 78085249 78085296 -72698257 + (TG)n Simple_repeat Simple_repeat 2 48 0 1767 141 36 13 chr11 78085296 78085580 -72697973 - AluSx SINE Alu -18 294 1 1985 201 37 33 chr11 78085594 78085849 -72697704 + L1MB7 LINE L1 5103 5356 -822 1988 141 3 0 chr11 78085849 78086148 -72697405 + AluSx SINE Alu 1 300 -12 1985 201 37 33 chr11 78086148 78086528 -72697025 + L1MB7 LINE L1 5356 5748 -430 524 333 0 9 chr11 78086528 78087000 -72696553 + (CATATA)n Simple_repeat Simple_repeat 1 467 0 308 372 0 0 chr11 78087001 78087095 -72696458 + (CATA)n Simple_repeat Simple_repeat 3 96 0 310 330 0 22 chr11 78087098 78087189 -72696364 + L1MC4 LINE L1 6614 6702 -1340 2020 121 0 3 chr11 78087189 78087478 -72696075 - AluSp SINE Alu -24 289 2 1205 224 85 0 chr11 78087478 78087772 -72695781 + L1MB7 LINE L1 5735 6053 -131 1848 138 3 13 chr11 78087905 78088216 -72695337 + AluJb SINE Alu 1 308 -4 2245 110 0 0 chr11 78088811 78089121 -72694432 - AluSx SINE Alu -2 310 1 917 147 6 45 chr11 78089121 78089277 -72694276 + MER41-int LTR ERV1 2504 2653 -3293 963 139 0 0 chr11 78089292 78089436 -72694117 + AluSg/x SINE Alu 164 307 -5 189 0 0 0 chr11 78090941 78090962 -72692591 + (A)n Simple_repeat Simple_repeat 1 21 0 1067 149 0 6 chr11 78091486 78091660 -72691893 + AluJb SINE Alu 136 308 -4 1887 145 7 7 chr11 78091880 78092177 -72691376 - AluSx SINE Alu -15 297 1 1316 129 15 5 chr11 78092493 78092695 -72690858 + AluJb SINE Alu 86 289 -23 183 80 0 0 chr11 78093171 78093196 -72690357 + (A)n Simple_repeat Simple_repeat 1 25 0 614 194 7 56 chr11 78093419 78093506 -72690047 + L1MB2 LINE L1 102 181 -6449 2172 113 3 0 chr11 78093506 78093815 -72689738 + AluSx SINE Alu 1 310 -2 614 194 7 56 chr11 78093815 78093871 -72689682 + L1MB2 LINE L1 181 238 -6392 2855 211 65 34 chr11 78094054 78094269 -72689284 + L1M4 LINE L1 2 209 -6444 2178 71 3 51 chr11 78094269 78094580 -72688973 - AluSg SINE Alu -14 296 1 2855 211 65 34 chr11 78094580 78095059 -72688494 + L1M4 LINE L1 209 1187 -5466 1638 165 60 0 chr11 78095059 78095344 -72688209 + AluJb SINE Alu 1 302 -10 509 108 0 12 chr11 78095347 78095430 -72688123 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 21 0 0 0 chr11 78095445 78095466 -72688087 + AT_rich Low_complexity Low_complexity 1 21 0 1872 124 3 10 chr11 78095476 78095766 -72687787 + AluSx SINE Alu 13 300 -12 787 155 0 0 chr11 78095766 78095882 -72687671 + FLAM_C SINE Alu 2 117 -16 8402 220 19 14 chr11 78095894 78096029 -72687524 + L1MB2 LINE L1 568 701 -5984 1947 122 0 48 chr11 78096029 78096340 -72687213 - AluSx SINE Alu -16 296 1 8402 220 19 14 chr11 78096340 78097183 -72686370 + L1MB2 LINE L1 701 1149 -5536 2253 129 13 24 chr11 78097183 78097562 -72685991 + THE1C LTR MaLR 1 375 0 8402 220 19 14 chr11 78097562 78098589 -72684964 + L1MB2 LINE L1 1149 2169 -4516 1997 118 28 0 chr11 78098594 78098882 -72684671 + AluSx SINE Alu 1 296 -16 1034 73 0 27 chr11 78098966 78099116 -72684437 + AluSp/q SINE Alu 163 308 -5 617 143 0 0 chr11 78099168 78099252 -72684301 + FLAM_C SINE Alu 36 119 -24 10277 195 54 33 chr11 78099284 78099975 -72683578 + L1MB2 LINE L1 2920 3595 -3162 2083 125 0 0 chr11 78099975 78100279 -72683274 + AluJb SINE Alu 1 304 -8 10277 195 54 33 chr11 78100279 78100735 -72682818 + L1MB2 LINE L1 3595 4040 -2717 1779 168 0 3 chr11 78100735 78101039 -72682514 - AluJb SINE Alu -9 303 1 10277 195 54 33 chr11 78101039 78101868 -72681685 + L1MB2 LINE L1 4040 4850 -1907 2157 62 0 7 chr11 78101868 78102143 -72681410 + AluY SINE Alu 26 298 -13 10277 195 54 33 chr11 78102143 78103916 -72679637 + L1MB2 LINE L1 4850 6750 -7 216 0 0 0 chr11 78104039 78104063 -72679490 + (T)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr11 78104090 78104110 -72679443 + (G)n Simple_repeat Simple_repeat 1 20 0 407 78 0 0 chr11 78104273 78104324 -72679229 - Alu SINE Alu -249 51 1 378 210 0 0 chr11 78104328 78104409 -72679144 + L1MB3 LINE L1 6096 6176 -7 1118 183 50 52 chr11 78104517 78104578 -72678975 + L1MCc LINE L1 1074 1134 -5807 2150 57 50 7 chr11 78104578 78104860 -72678693 + AluY SINE Alu 1 294 -17 1118 183 50 52 chr11 78104860 78105224 -72678329 + L1MCc LINE L1 1134 5848 -1093 3975 171 23 36 chr11 78105229 78106064 -72677489 + L1MB5 LINE L1 5345 6168 -6 4400 159 61 10 chr11 78106071 78106157 -72677396 + L1MB7 LINE L1 5869 5949 -1030 2058 101 10 29 chr11 78106157 78106465 -72677088 + AluSq SINE Alu 1 302 -11 4400 159 61 10 chr11 78106465 78107374 -72676179 + L1MB7 LINE L1 5949 6932 -47 2274 77 3 0 chr11 78107374 78107673 -72675880 - AluY SINE Alu -11 300 1 3695 187 30 47 chr11 78107842 78107927 -72675626 - L1MB3 LINE L1 -7 6412 6327 2265 84 3 0 chr11 78107927 78108223 -72675330 + AluSp SINE Alu 1 297 -16 3695 187 30 47 chr11 78108223 78108456 -72675097 - L1MB3 LINE L1 -92 6327 6091 1450 218 0 7 chr11 78108456 78108741 -72674812 - AluJo SINE Alu -29 283 1 3695 187 30 47 chr11 78108741 78109354 -72674199 - L1MB3 LINE L1 -328 6091 5469 1353 216 0 11 chr11 78109354 78109641 -72673912 - AluJb SINE Alu -28 284 1 2107 119 0 7 chr11 78109649 78109952 -72673601 - AluSx SINE Alu -11 301 1 3695 187 30 47 chr11 78109952 78111737 -72671816 - L1MB3 LINE L1 -957 5462 2992 2348 50 0 0 chr11 78112044 78112350 -72671203 - AluY SINE Alu 0 306 1 2138 207 22 49 chr11 78112981 78113336 -72670217 - L1MB3 LINE L1 -3389 2993 2661 1519 189 14 3 chr11 78113336 78113621 -72669932 + AluJo SINE Alu 1 288 -24 2138 207 22 49 chr11 78113621 78113897 -72669656 - L1MB3 LINE L1 -3721 2661 2379 940 117 0 0 chr11 78113906 78114034 -72669519 + AluSq/x SINE Alu 9 136 -177 3501 157 38 8 chr11 78114034 78114621 -72668932 - L1MB3 LINE L1 -5762 622 19 825 309 162 49 chr11 78115039 78115800 -72667753 - L2 LINE L2 -2246 1068 222 2294 110 7 0 chr11 78116294 78116593 -72666960 - AluSx SINE Alu -11 301 1 183 217 67 33 chr11 78116738 78116798 -72666755 + L2 LINE L2 2670 2731 -583 256 198 28 47 chr11 78117459 78117565 -72665988 - L1M4 LINE L1 -1746 4400 4297 1137 175 43 9 chr11 78117623 78117834 -72665719 - AluJb SINE Alu -55 257 40 274 358 42 0 chr11 78118113 78118233 -72665320 - L2 LINE L2 0 3272 3148 1717 252 78 16 chr11 78118296 78118573 -72664980 + HAL1 LINE L1 1160 1418 -1089 1958 130 41 24 chr11 78118573 78118942 -72664611 - THE1C LTR MaLR 0 375 1 1717 252 78 16 chr11 78118942 78119329 -72664224 + HAL1 LINE L1 1418 1891 -616 1769 117 97 31 chr11 78119340 78119690 -72663863 - THE1C LTR MaLR -2 373 1 248 263 33 4 chr11 78119708 78119807 -72663746 - MLT1I LTR MaLR -29 563 316 414 239 15 39 chr11 78119978 78120108 -72663445 - MLT1H LTR MaLR -376 173 47 487 211 61 88 chr11 78120167 78120395 -72663158 + HAL1 LINE L1 1885 2106 -401 1169 263 76 39 chr11 78120460 78120865 -72662688 + HsTC2a DNA Tc2 4 429 -1471 2349 115 0 6 chr11 78120865 78121177 -72662376 + AluSx SINE Alu 1 310 -2 1169 263 76 39 chr11 78121177 78121232 -72662321 + HsTC2a DNA Tc2 429 481 -263 784 126 0 8 chr11 78121232 78121351 -72662202 + FLAM_C SINE Alu 1 118 -15 87 28 0 0 chr11 78121351 78121459 -72662094 + AT_rich Low_complexity Low_complexity 1 108 0 1201 39 0 0 chr11 78121465 78121595 -72661958 + AluSp SINE Alu 3 132 -181 2163 126 10 0 chr11 78121597 78121891 -72661662 + AluSc SINE Alu 1 297 -12 365 181 0 0 chr11 78121899 78121971 -72661582 + L1MC/D LINE L1 5023 5094 -1052 1232 185 28 3 chr11 78122037 78122432 -72661121 + L1MC/D LINE L1 5088 5495 -743 1876 327 33 12 chr11 78122432 78123161 -72660392 - ERVL LTR ERVL -2860 2807 2047 1854 149 3 39 chr11 78123161 78123470 -72660083 + AluJo SINE Alu 1 298 -14 1876 327 33 12 chr11 78123470 78123581 -72659972 - ERVL LTR ERVL -3620 2047 1940 335 156 94 23 chr11 78123595 78123720 -72659833 - MLT1C LTR MaLR 0 390 165 207 100 0 0 chr11 78123722 78123752 -72659801 + (GAAAA)n Simple_repeat Simple_repeat 5 34 0 592 153 110 31 chr11 78123753 78123916 -72659637 - MLT1C LTR MaLR -291 176 1 2331 113 10 0 chr11 78123975 78124324 -72659229 + AluSx SINE Alu 1 352 0 560 341 45 77 chr11 78124374 78124732 -72658821 - ERVL LTR ERVL -3936 1828 1460 1848 168 0 17 chr11 78124732 78125029 -72658524 + AluJo SINE Alu 9 300 -12 2526 83 0 3 chr11 78125029 78125341 -72658212 + AluY SINE Alu 1 311 0 560 341 45 77 chr11 78125341 78125489 -72658064 - ERVL LTR ERVL -4302 1462 1337 607 246 40 3 chr11 78125644 78125855 -72657698 + L1ME LINE L1 5424 5596 -568 284 129 43 57 chr11 78125836 78125906 -72657647 + L1MC4 LINE L1 7829 7897 -145 * 2053 121 0 28 chr11 78126012 78126342 -72657211 + AluSx SINE Alu 1 322 0 1641 165 11 4 chr11 78126405 78126665 -72656888 - AluJo SINE Alu -50 262 1 1377 279 104 16 chr11 78126666 78127117 -72656436 + MLT1E LTR MaLR 96 586 -7 1207 286 30 68 chr11 78127124 78127628 -72655925 + MLT1J LTR MaLR 25 509 -2 855 276 120 48 chr11 78128028 78128543 -72655010 - LTR67 LTR ERVL 0 557 6 305 253 92 0 chr11 78129105 78129192 -72654361 - MLT1K LTR MaLR -6 582 488 1512 198 32 35 chr11 78129420 78129733 -72653820 + AluJb SINE Alu 1 312 0 2537 98 0 32 chr11 78129989 78130059 -72653494 - THE1B LTR MaLR 0 364 293 2276 103 0 7 chr11 78130059 78130361 -72653192 - AluSx SINE Alu -12 300 1 2537 98 0 32 chr11 78130361 78130666 -72652887 - THE1B LTR MaLR -71 293 1 2441 72 0 3 chr11 78130872 78131165 -72652388 + AluSx SINE Alu 7 298 -14 200 275 14 29 chr11 78131718 78131787 -72651766 + MIR3 SINE MIR 109 176 -32 23 0 0 0 chr11 78133802 78133825 -72649728 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr11 78133845 78133875 -72649678 + AT_rich Low_complexity Low_complexity 1 30 0 249 161 18 36 chr11 78133919 78133975 -72649578 - MIR SINE MIR -26 236 182 1043 134 45 0 chr11 78133993 78134150 -72649403 + FRAM SINE Alu 1 163 -13 589 231 8 0 chr11 78134150 78134267 -72649286 - MIR SINE MIR -119 143 26 393 188 50 0 chr11 78134855 78134935 -72648618 - MLT1K LTR MaLR 0 588 505 2350 113 3 0 chr11 78134965 78135276 -72648277 + AluSx SINE Alu 1 312 0 418 337 44 58 chr11 78135642 78135936 -72647617 - L2 LINE L2 0 3272 2983 219 338 78 14 chr11 78136089 78136231 -72647322 - L2 LINE L2 -508 2806 2656 1658 164 6 22 chr11 78136324 78136641 -72646912 + L1M3 LINE L1 5476 5787 -396 876 178 18 12 chr11 78136655 78136824 -72646729 + AluJo SINE Alu 121 290 -22 313 86 0 77 chr11 78136830 78136882 -72646671 + L1MB2 LINE L1 5894 5941 -227 1283 171 23 5 chr11 78136885 78137101 -72646452 + AluJo SINE Alu 81 300 -12 751 181 60 37 chr11 78137101 78137316 -72646237 + L1MB2 LINE L1 5949 6168 -3 405 247 40 27 chr11 78138301 78138639 -72644914 + (TCTCTG)n Simple_repeat Simple_repeat 1 342 0 212 253 193 72 chr11 78141840 78142006 -72641547 + MIR3 SINE MIR 16 201 -7 494 253 25 19 chr11 78142371 78142529 -72641024 + MER103 DNA DNA 1 159 -7 232 343 0 0 chr11 78143998 78144065 -72639488 + L2 LINE L2 3205 3271 -1 294 29 0 0 chr11 78144133 78144168 -72639385 + (CA)n Simple_repeat Simple_repeat 1 35 0 218 363 6 6 chr11 78144895 78145074 -72638479 + (CA)n Simple_repeat Simple_repeat 2 180 0 619 208 15 8 chr11 78146962 78147092 -72636461 + MIR SINE MIR 20 150 -58 199 240 253 0 chr11 78148188 78148263 -72635290 + L2 LINE L2 3163 3256 -16 454 247 75 14 chr11 78151568 78151714 -72631839 - MIR SINE MIR -64 198 44 958 171 32 0 chr11 78152262 78152420 -72631133 - MER20 DNA MER1_type -1 218 56 2265 95 3 10 chr11 78152422 78152727 -72630826 + AluSx SINE Alu 1 303 -9 2551 79 0 0 chr11 78153907 78154212 -72629341 - AluSc SINE Alu -4 305 1 1049 321 66 29 chr11 78154295 78154320 -72629233 - HAL1 LINE L1 -1447 1060 1037 2231 109 7 3 chr11 78154320 78154613 -72628940 + AluSx SINE Alu 1 294 -18 1049 321 66 29 chr11 78154613 78155260 -72628293 - HAL1 LINE L1 -1470 1037 345 2040 133 41 0 chr11 78155260 78155554 -72627999 + AluSx SINE Alu 1 306 -6 1049 321 66 29 chr11 78155554 78155758 -72627795 - HAL1 LINE L1 -2162 345 150 1959 156 0 10 chr11 78155974 78156288 -72627265 - AluJb SINE Alu -1 311 1 1890 150 18 7 chr11 78156397 78156683 -72626870 - AluJb SINE Alu -23 289 1 656 177 8 15 chr11 78157215 78157345 -72626208 - L1MC/D LINE L1 -636 5708 5580 298 255 20 10 chr11 78158186 78158284 -72625269 + MIR SINE MIR 20 118 -90 381 256 131 23 chr11 78158855 78159031 -72624522 - MIR SINE MIR -31 231 37 727 228 90 39 chr11 78160482 78160793 -72622760 - L2 LINE L2 -1 3312 2986 298 224 15 0 chr11 78160841 78160908 -72622645 + L2 LINE L2 3241 3308 -5 2060 126 23 7 chr11 78160922 78161224 -72622329 + AluSx SINE Alu 1 307 -5 1634 235 55 33 chr11 78161241 78161755 -72621798 + MER20B DNA MER1_type 259 783 0 877 118 96 21 chr11 78163181 78163368 -72620185 + L1PB2 LINE L1 5950 6150 -1 190 339 25 8 chr11 78163661 78163739 -72619814 + L2 LINE L2 2635 2717 -597 2409 78 7 0 chr11 78163739 78164023 -72619530 + AluSx SINE Alu 1 289 -23 234 0 0 0 chr11 78164023 78164049 -72619504 + (CAATA)n Simple_repeat Simple_repeat 2 27 0 190 339 25 8 chr11 78164057 78164099 -72619454 + L2 LINE L2 2717 2757 -557 254 336 74 8 chr11 78164539 78164661 -72618892 + MIR SINE MIR 12 141 -121 2267 109 3 10 chr11 78164771 78165073 -72618480 + AluSx SINE Alu 1 300 -12 312 125 0 0 chr11 78165073 78165121 -72618432 + L1MC4 LINE L1 7566 7613 -429 1324 174 128 53 chr11 78165163 78165576 -72617977 + L1MC4 LINE L1 7598 8041 -1 428 202 173 39 chr11 78165556 78165764 -72617789 + L1ME3A LINE L1 5934 6169 -1 * 2281 110 10 0 chr11 78165775 78166084 -72617469 + AluSx SINE Alu 1 312 0 190 250 31 16 chr11 78166131 78166195 -72617358 + L2 LINE L2 3178 3242 -30 235 359 68 44 chr11 78167482 78167688 -72615865 + MIR SINE MIR 52 262 0 311 276 331 0 chr11 78167748 78167929 -72615624 + L2 LINE L2 3015 3255 -17 485 303 226 3 chr11 78168615 78168982 -72614571 - L3 LINE CR1 -142 1435 987 1185 268 20 35 chr11 78169489 78169889 -72613664 + MLT1I LTR MaLR 16 409 0 529 295 43 0 chr11 78169910 78170049 -72613504 - MIR3 SINE MIR -34 174 30 23 0 0 0 chr11 78170265 78170288 -72613265 + AT_rich Low_complexity Low_complexity 1 23 0 2303 106 6 10 chr11 78170772 78171084 -72612469 + AluSx SINE Alu 1 311 -1 913 258 104 8 chr11 78171290 78171654 -72611899 - L1MEc LINE L1 -4600 1796 1398 566 202 70 101 chr11 78171654 78171732 -72611821 + MLT1F1 LTR MaLR 1 80 -487 2242 110 10 0 chr11 78171732 78172033 -72611520 + AluSp SINE Alu 1 304 -9 566 202 70 101 chr11 78172033 78172212 -72611341 + MLT1F1 LTR MaLR 80 250 -317 21 36 0 0 chr11 78172233 78172261 -72611292 + AT_rich Low_complexity Low_complexity 1 28 0 5206 169 51 18 chr11 78172564 78173722 -72609831 - L1MC2 LINE L1 -2 6342 5150 4261 158 64 22 chr11 78173759 78173813 -72609740 - L1MB7 LINE L1 0 6979 6929 2400 99 0 0 chr11 78173813 78174115 -72609438 + AluSx SINE Alu 1 302 -10 2387 76 0 10 chr11 78174115 78174418 -72609135 + AluY SINE Alu 1 300 -11 4261 158 64 22 chr11 78174418 78175320 -72608233 - L1MB7 LINE L1 -50 6929 5950 2063 117 9 35 chr11 78175320 78175637 -72607916 - AluSq SINE Alu -4 309 1 4261 158 64 22 chr11 78175637 78175723 -72607830 - L1MB7 LINE L1 -1029 5950 5869 3741 171 23 36 chr11 78175730 78176565 -72606988 - L1MB5 LINE L1 -6 6168 5345 971 188 53 54 chr11 78176570 78176935 -72606618 - L1MB7 LINE L1 -1093 5848 5484 2284 57 50 7 chr11 78176935 78177217 -72606336 - AluY SINE Alu -17 294 1 971 188 53 54 chr11 78177217 78177276 -72606277 - L1MB7 LINE L1 -1457 5484 1074 3315 154 14 20 chr11 78177381 78177466 -72606087 - L1MB3 LINE L1 -7 6176 6092 2410 84 3 0 chr11 78177466 78177762 -72605791 + AluSp SINE Alu 1 297 -16 3315 154 14 20 chr11 78177762 78177995 -72605558 - L1MB3 LINE L1 -91 6092 5859 1593 218 0 7 chr11 78177995 78178280 -72605273 - AluJo SINE Alu -29 283 1 3315 154 14 20 chr11 78178280 78178886 -72604667 - L1MB3 LINE L1 -324 5859 5298 1461 213 3 11 chr11 78178893 78179179 -72604374 - AluJb SINE Alu -28 284 1 180 0 0 0 chr11 78179187 78179207 -72604346 + (T)n Simple_repeat Simple_repeat 1 20 0 1032 167 18 0 chr11 78179321 78179489 -72604064 - FRAM SINE Alu -5 171 1 614 198 156 45 chr11 78179490 78179576 -72603977 - L1MC4 LINE L1 -9 8033 7958 1934 139 20 0 chr11 78179576 78179870 -72603683 - AluSx SINE Alu -12 300 1 614 198 156 45 chr11 78179870 78179898 -72603655 - L1MC4 LINE L1 -84 7958 7934 288 0 0 0 chr11 78179898 78179930 -72603623 + (TG)n Simple_repeat Simple_repeat 2 33 0 614 198 156 45 chr11 78179930 78180057 -72603496 - L1MC4 LINE L1 -108 7934 7764 296 270 226 0 chr11 78180131 78180268 -72603285 - L1M4 LINE L1 -2320 3826 3659 337 276 60 9 chr11 78180287 78180403 -72603150 + L1ME3A LINE L1 6047 6168 -2 1809 164 0 17 chr11 78180413 78180712 -72602841 - AluJb SINE Alu -18 294 1 310 275 142 10 chr11 78180847 78181149 -72602404 - L1M4 LINE L1 -2732 3414 3073 2074 146 7 10 chr11 78181302 78181610 -72601943 + AluSx SINE Alu 1 307 -5 338 301 75 20 chr11 78181752 78181898 -72601655 - L2 LINE L2 0 3313 3160 2322 82 10 10 chr11 78181982 78182285 -72601268 - AluSc SINE Alu -6 303 1 2573 192 59 66 chr11 78182621 78182662 -72600891 + L1MC4a LINE L1 6559 6599 -1209 1765 164 7 39 chr11 78182662 78182972 -72600581 - AluJo SINE Alu -12 300 1 2573 192 59 66 chr11 78182972 78183756 -72599797 + L1MC4a LINE L1 6599 7306 -502 2362 88 0 3 chr11 78183763 78184057 -72599496 + AluSx SINE Alu 6 298 -14 212 275 14 29 chr11 78184608 78184677 -72598876 + MIR3 SINE MIR 109 176 -32 23 0 0 0 chr11 78186691 78186714 -72596839 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr11 78186734 78186764 -72596789 + AT_rich Low_complexity Low_complexity 1 30 0 263 161 18 36 chr11 78186808 78186864 -72596689 - MIR SINE MIR -26 236 182 1036 134 45 0 chr11 78186882 78187039 -72596514 + FRAM SINE Alu 1 163 -13 627 231 8 0 chr11 78187039 78187156 -72596397 - MIR SINE MIR -119 143 26 390 188 50 0 chr11 78187744 78187824 -72595729 - MLT1K LTR MaLR 0 588 505 2344 113 3 0 chr11 78187854 78188165 -72595388 + AluSx SINE Alu 1 312 0 207 262 208 40 chr11 78188328 78188477 -72595076 + L3 LINE CR1 1351 1524 -53 477 333 51 65 chr11 78188531 78188825 -72594728 - L2 LINE L2 0 3272 2983 242 338 78 14 chr11 78188978 78189120 -72594433 - L2 LINE L2 -508 2806 2656 1648 164 6 22 chr11 78189213 78189530 -72594023 + L1M3 LINE L1 5476 5787 -396 871 178 18 12 chr11 78189544 78189713 -72593840 + AluJo SINE Alu 121 290 -22 313 86 0 77 chr11 78189719 78189771 -72593782 + L1MB2 LINE L1 5894 5941 -227 1278 171 23 5 chr11 78189774 78189990 -72593563 + AluJo SINE Alu 81 300 -12 751 181 60 37 chr11 78189990 78190205 -72593348 + L1MB2 LINE L1 5949 6168 -3 1049 165 18 0 chr11 78191063 78191233 -72592320 - FRAM SINE Alu -3 173 1 609 217 143 37 chr11 78191234 78191320 -72592233 - L1MC4 LINE L1 -9 8033 7958 1934 139 20 0 chr11 78191320 78191614 -72591939 - AluSx SINE Alu -12 300 1 609 217 143 37 chr11 78191614 78191642 -72591911 - L1MC4 LINE L1 -84 7958 7934 216 0 0 0 chr11 78191642 78191666 -72591887 + (TG)n Simple_repeat Simple_repeat 2 25 0 609 217 143 37 chr11 78191666 78191794 -72591759 - L1MC4 LINE L1 -108 7934 7764 296 270 226 0 chr11 78191868 78192005 -72591548 - L1M4 LINE L1 -2320 3826 3659 331 276 60 9 chr11 78192024 78192140 -72591413 + L1ME3A LINE L1 6047 6168 -2 1809 164 0 17 chr11 78192150 78192449 -72591104 - AluJb SINE Alu -18 294 1 310 275 142 10 chr11 78192584 78192886 -72590667 - L1M4 LINE L1 -2732 3414 3073 2074 146 7 10 chr11 78193039 78193347 -72590206 + AluSx SINE Alu 1 307 -5 322 308 75 20 chr11 78193489 78193635 -72589918 - L2 LINE L2 0 3313 3160 2322 82 10 10 chr11 78193719 78194022 -72589531 - AluSc SINE Alu -6 303 1 1765 164 7 39 chr11 78194399 78194709 -72588844 - AluJo SINE Alu -12 300 1 4348 198 61 52 chr11 78194766 78195500 -72588053 + L1MC4a LINE L1 6586 7312 -496 2422 92 0 3 chr11 78195500 78195806 -72587747 + AluSx SINE Alu 6 310 -2 4348 198 61 52 chr11 78195806 78196147 -72587406 + L1MC4a LINE L1 7312 7676 -132 2402 89 0 0 chr11 78196147 78196440 -72587113 - AluSx SINE Alu -18 294 2 4348 198 61 52 chr11 78196440 78196575 -72586978 + L1MC4a LINE L1 7676 7808 0 2569 69 0 0 chr11 78196595 78196898 -72586655 + AluY SINE Alu 1 303 -8 265 339 58 0 chr11 78198489 78198610 -72584943 + MIR SINE MIR 47 174 -88 211 257 0 43 chr11 78200797 78200867 -72582686 - L2 LINE L2 0 3272 3206 315 354 102 8 chr11 78201524 78201651 -72581902 + L2 LINE L2 3125 3263 -9 568 253 107 0 chr11 78201657 78201807 -72581746 - MIR SINE MIR -77 185 20 800 10 0 29 chr11 78202478 78202580 -72580973 + (TG)n Simple_repeat Simple_repeat 1 99 0 385 300 67 71 chr11 78202699 78202939 -72580614 - L2 LINE L2 -63 3209 2971 247 277 30 50 chr11 78202986 78203087 -72580466 + L3 LINE CR1 1404 1502 -75 204 318 0 15 chr11 78204366 78204432 -72579121 + CT-rich Low_complexity Low_complexity 2 66 0 260 342 158 15 chr11 78204848 78205050 -72578503 - L2 LINE L2 -1172 2142 1912 385 233 101 79 chr11 78205256 78205473 -72578080 + MIR3 SINE MIR 9 262 0 1731 166 112 15 chr11 78205484 78205876 -72577677 + L1MB7 LINE L1 5634 6063 -121 999 196 0 16 chr11 78205933 78206117 -72577436 - AluSg/x SINE Alu 0 310 130 1985 167 0 0 chr11 78206953 78207247 -72576306 - AluJb SINE Alu -18 294 1 693 302 164 28 chr11 78207297 78208054 -72575499 + L2 LINE L2 2126 3008 -264 744 290 65 9 chr11 78208568 78208785 -72574768 + MIR SINE MIR 32 260 -2 739 171 0 39 chr11 78208842 78208971 -72574582 - FRAM SINE Alu -12 164 41 749 288 55 9 chr11 78209238 78209457 -72574096 + MIR SINE MIR 32 260 -2 521 271 38 71 chr11 78210076 78210316 -72573237 + MIR SINE MIR 28 259 -3 550 288 7 7 chr11 78210498 78210644 -72572909 - MIR3 SINE MIR -19 189 44 258 314 153 0 chr11 78211773 78211897 -72571656 - L2 LINE L2 0 3313 3171 379 303 76 0 chr11 78212547 78212679 -72570874 + MIR3 SINE MIR 5 146 -62 769 207 207 14 chr11 78212863 78213071 -72570482 - MIR SINE MIR -13 249 2 269 305 122 0 chr11 78213201 78213283 -72570270 + MIR SINE MIR 39 130 -78 619 291 78 8 chr11 78213337 78213581 -72569972 - MIR SINE MIR 0 262 2 312 299 79 43 chr11 78214284 78214514 -72569039 + MIR3 SINE MIR 6 249 -13 221 347 88 12 chr11 78214587 78214757 -72568796 - MIR SINE MIR -71 191 9 320 328 80 0 chr11 78215910 78216035 -72567518 + L2 LINE L2 3122 3256 -16 488 289 31 0 chr11 78216082 78216210 -72567343 - MIR SINE MIR -109 153 22 412 307 0 26 chr11 78216469 78216583 -72566970 - MIR SINE MIR -66 142 32 392 269 71 33 chr11 78218576 78218758 -72564795 - MIR SINE MIR -12 250 62 189 325 137 21 chr11 78218790 78219024 -72564529 + L3 LINE CR1 946 1206 -371 336 274 80 69 chr11 78220523 78220698 -72562855 - MIR SINE MIR -76 186 10 425 341 67 0 chr11 78221147 78221326 -72562227 + MIR SINE MIR 7 197 -65 276 218 161 0 chr11 78221426 78221513 -72562040 - MIR SINE MIR -52 210 110 1013 109 6 0 chr11 78222810 78222966 -72560587 - L1MA3 LINE L1 -34 6271 6115 274 358 42 0 chr11 78223679 78223799 -72559754 - L2 LINE L2 0 3272 3148 301 369 169 3 chr11 78224044 78224394 -72559159 - L2 LINE L2 -571 2743 2336 792 184 98 11 chr11 78225285 78225459 -72558094 - MER5A DNA MER1_type 0 189 1 284 243 47 65 chr11 78225822 78225929 -72557624 + MIR3 SINE MIR 58 162 -46 686 276 12 0 chr11 78225963 78226133 -72557420 + MIR SINE MIR 89 260 -2 423 244 129 72 chr11 78226543 78226771 -72556782 + MIR SINE MIR 1 256 -6 218 318 146 9 chr11 78227226 78227336 -72556217 + L2 LINE L2 3134 3258 -14 336 308 62 8 chr11 78228370 78228500 -72555053 + L2 LINE L2 3136 3272 0 264 326 0 33 chr11 78228493 78228585 -72554968 - MIR SINE MIR 0 262 174 * 465 218 37 125 chr11 78228657 78228873 -72554680 + MIR SINE MIR 39 235 -27 218 299 92 97 chr11 78229239 78229456 -72554097 - L3 LINE CR1 -197 1380 1165 2283 117 3 0 chr11 78229822 78230131 -72553422 - AluSx SINE Alu -1 311 2 237 295 21 11 chr11 78231332 78231427 -72552126 + L2 LINE L2 2638 2733 -581 609 75 0 54 chr11 78231509 78231602 -72551951 - AluS SINE Alu -223 89 2 1172 154 43 0 chr11 78231777 78231985 -72551568 - L1MC4a LINE L1 -459 7349 7133 330 300 186 7 chr11 78231999 78232139 -72551414 - MIR SINE MIR -74 188 24 257 170 21 0 chr11 78232289 78232336 -72551217 + L1MC4 LINE L1 7458 7505 -537 243 125 83 0 chr11 78232633 78232681 -72550872 + L3 LINE CR1 1524 1575 -2 184 243 0 0 chr11 78234348 78234385 -72549168 + L2 LINE L2 3224 3260 -12 51 31 0 0 chr11 78234647 78234712 -72548841 + AT_rich Low_complexity Low_complexity 1 65 0 2362 85 3 3 chr11 78234720 78235014 -72548539 + AluY SINE Alu 1 294 -17 603 179 0 30 chr11 78235014 78235139 -72548414 - FLAM_C SINE Alu -179 123 1 210 150 0 0 chr11 78235151 78235191 -72548362 + (T)n Simple_repeat Simple_repeat 1 40 0 2269 119 0 31 chr11 78235876 78236196 -72547357 - AluSx SINE Alu -2 310 1 474 267 82 60 chr11 78287377 78287609 -72495944 + L2 LINE L2 3077 3313 0 255 295 219 25 chr11 78287929 78288088 -72495465 - L3 LINE CR1 -7 1570 1443 2037 95 51 7 chr11 78288088 78288384 -72495169 - AluSp SINE Alu -3 310 2 255 295 219 25 chr11 78288384 78288543 -72495010 - L3 LINE CR1 -134 1443 1190 4028 116 60 53 chr11 78289117 78289759 -72493794 + L1PA16 LINE L1 5263 5899 -264 1992 106 0 0 chr11 78289759 78290033 -72493520 - AluSx SINE Alu -24 288 15 372 125 18 0 chr11 78290041 78290097 -72493456 - AluS SINE Alu -246 57 1 4028 116 60 53 chr11 78290097 78290359 -72493194 + L1PA16 LINE L1 5905 6162 -1 252 158 0 0 chr11 78290509 78290566 -72492987 + L1MB7 LINE L1 6128 6184 0 245 267 0 0 chr11 78290566 78290626 -72492927 + MIR SINE MIR 196 255 -7 634 270 82 16 chr11 78290852 78291054 -72492499 - MIR SINE MIR -12 250 37 194 234 344 0 chr11 78293282 78293346 -72490207 + MIR SINE MIR 108 193 -69 445 316 133 45 chr11 78293829 78294206 -72489347 + L2 LINE L2 2862 3271 -1 837 138 22 22 chr11 78294308 78294446 -72489107 + FLAM_C SINE Alu 1 138 -5 2140 96 17 0 chr11 78294463 78294756 -72488797 + AluSg SINE Alu 1 298 -12 269 256 64 13 chr11 78294799 78294877 -72488676 - L2 LINE L2 -69 3203 3122 1025 93 99 17 chr11 78294950 78295122 -72488431 + LTR9B LTR ERV1 1 186 -458 1315 84 6 0 chr11 78295122 78295300 -72488253 + AluSp SINE Alu 1 179 -134 2369 148 8 8 chr11 78295300 78295665 -72487888 + LTR9B LTR ERV1 280 644 0 223 203 149 0 chr11 78295665 78295739 -72487814 - L2 LINE L2 -211 3061 2977 2492 56 3 0 chr11 78296230 78296536 -72487017 + AluY SINE Alu 1 307 -4 263 342 18 35 chr11 78296587 78296701 -72486852 - MIR SINE MIR -79 129 18 1226 282 43 98 chr11 78297441 78298185 -72485368 + L2 LINE L2 2275 2977 -337 611 193 18 0 chr11 78298230 78298339 -72485214 + MLT1A1 LTR MaLR 255 365 0 607 177 57 0 chr11 78298339 78298463 -72485090 - L1MB8 LINE L1 -275 5903 5773 1974 118 18 98 chr11 78298463 78298723 -72484830 + LTR23 LTR ERV1 45 264 -173 1795 131 0 49 chr11 78298723 78298860 -72484693 + AluSx SINE Alu 7 149 -163 2010 74 34 0 chr11 78298860 78299168 -72484385 + AluY SINE Alu 3 319 0 1795 131 0 49 chr11 78299168 78299335 -72484218 + AluSx SINE Alu 149 297 -15 1974 118 18 98 chr11 78299335 78299473 -72484080 + LTR23 LTR ERV1 264 411 -26 444 290 46 8 chr11 78299490 78299621 -72483932 + L2 LINE L2 3137 3272 0 256 346 33 26 chr11 78299708 78299861 -72483692 + L2 LINE L2 3101 3254 -18 501 306 129 56 chr11 78299923 78300319 -72483234 + L2 LINE L2 2848 3272 0 261 57 0 0 chr11 78300784 78300819 -72482734 + (GGGA)n Simple_repeat Simple_repeat 4 38 0 189 87 43 22 chr11 78301387 78301433 -72482120 + (CACCC)n Simple_repeat Simple_repeat 5 51 0 255 252 216 9 chr11 78301765 78301876 -72481677 - L2 LINE L2 -9 3304 3171 400 249 207 21 chr11 78302181 78302374 -72481179 - L1ME4a LINE L1 -41 6080 5852 2115 83 17 0 chr11 78303020 78303310 -72480243 - AluSx SINE Alu -17 295 1 508 231 224 0 chr11 78303324 78303471 -72480082 - MIR SINE MIR -12 250 71 371 310 127 7 chr11 78304326 78304468 -72479085 - L2 LINE L2 -2 3270 3112 571 281 81 83 chr11 78304661 78305021 -72478532 + L2 LINE L2 2914 3272 0 1092 209 26 9 chr11 78305110 78305340 -72478213 + MIR SINE MIR 28 261 -1 2048 119 0 0 chr11 78305451 78305754 -72477799 + AluJb SINE Alu 5 307 -5 221 77 51 0 chr11 78305758 78305797 -72477756 + GA-rich Low_complexity Low_complexity 2 42 0 484 253 52 67 chr11 78306173 78306367 -72477186 - MIR SINE MIR -71 191 1 1986 114 3 44 chr11 78306763 78307080 -72476473 - AluSq SINE Alu -9 304 1 33 0 0 0 chr11 78307080 78307113 -72476440 + AT_rich Low_complexity Low_complexity 1 33 0 753 149 0 33 chr11 78307116 78307237 -72476316 - FLAM_C SINE Alu -16 117 1 235 253 203 0 chr11 78307386 78307465 -72476088 + MIR SINE MIR 76 170 -92 847 119 0 8 chr11 78307476 78307610 -72475943 + L1MB8 LINE L1 5308 5440 -740 * 1166 161 8 39 chr11 78307597 78307610 -72475943 + L1MB8 LINE L1 5896 5908 -270 1555 176 7 14 chr11 78307610 78307905 -72475648 + AluJb SINE Alu 1 293 -19 1166 161 8 39 chr11 78307905 78308145 -72475408 + L1MB8 LINE L1 5908 6141 -37 * 3514 163 14 44 chr11 78308135 78308781 -72474772 + L1 LINE L1 4643 5265 -881 1798 143 0 44 chr11 78308781 78309100 -72474453 - AluSx SINE Alu 0 306 1 3514 163 14 44 chr11 78309100 78309217 -72474336 + L1 LINE L1 5265 5384 -762 958 165 23 11 chr11 78309403 78309579 -72473974 - AluJb SINE Alu -16 296 119 416 253 86 48 chr11 78309844 78310030 -72473523 - MIR SINE MIR -34 228 36 231 313 0 0 chr11 78310202 78310282 -72473271 - MIR SINE MIR -112 150 71 689 165 0 0 chr11 78310464 78310573 -72472980 + MER5A DNA MER1_type 56 164 -25 2105 94 3 47 chr11 78311515 78311833 -72471720 + AluSq SINE Alu 5 308 -5 321 331 56 7 chr11 78311877 78312019 -72471534 - L3 LINE CR1 -13 1564 1416 603 258 56 28 chr11 78312082 78312260 -72471293 - MIR SINE MIR -52 210 28 276 352 47 43 chr11 78312602 78312835 -72470718 + L2 LINE L2 2069 2302 -1012 564 297 103 70 chr11 78313067 78313669 -72469884 + L2 LINE L2 2658 3271 -1 227 281 0 0 chr11 78314109 78314166 -72469387 + L2 LINE L2 3250 3306 -7 546 291 147 78 chr11 78314340 78314502 -72469051 + L3 LINE CR1 122 272 -1305 1988 127 6 16 chr11 78314502 78314816 -72468737 - AluSx SINE Alu 0 312 2 546 291 147 78 chr11 78314816 78315151 -72468402 + L3 LINE CR1 272 653 -924 352 245 122 20 chr11 78315161 78315259 -72468294 + L2 LINE L2 3206 3313 0 207 321 48 0 chr11 78315238 78315322 -72468231 + L3 LINE CR1 642 729 -848 * 186 103 35 0 chr11 78315341 78315370 -72468183 + L3 LINE CR1 1232 1261 -316 333 99 11 55 chr11 78315477 78315568 -72467985 + (GGGAA)n Simple_repeat Simple_repeat 4 90 0 1070 239 14 0 chr11 78315631 78315849 -72467704 + MER58A DNA MER1_type 4 224 0 2677 99 3 3 chr11 78316119 78316474 -72467079 - THE1A LTR MaLR 0 355 1 309 256 26 34 chr11 78318385 78318418 -72465135 + MIR SINE MIR 18 50 -158 653 179 116 0 chr11 78318418 78318530 -72465023 + FLAM_C SINE Alu 2 126 -7 309 256 26 34 chr11 78318530 78318618 -72464935 + MIR SINE MIR 50 142 -66 288 313 207 39 chr11 78318626 78318805 -72464748 - L2 LINE L2 -5 3308 3100 6185 225 65 81 chr11 78318826 78321193 -72462360 + L1M3e LINE L1 1 2534 -4573 2381 49 3 26 chr11 78321193 78321499 -72462054 + AluY SINE Alu 1 299 -12 6185 225 65 81 chr11 78321499 78321891 -72461662 + L1M3e LINE L1 2534 2931 -4176 958 184 4 70 chr11 78321892 78322120 -72461433 + AluJb SINE Alu 87 299 -13 2325 227 135 10 chr11 78322128 78323070 -72460483 + L1M1 LINE L1 3052 4130 -3435 2202 99 3 0 chr11 78323491 78323793 -72459760 + AluSx SINE Alu 1 303 -9 817 267 31 52 chr11 78323796 78324274 -72459279 - L1ME LINE L1 -296 5825 5310 849 137 40 124 chr11 78324996 78325245 -72458308 + L1MC4 LINE L1 6969 7196 -846 437 148 198 20 chr11 78325246 78325347 -72458206 + MIR SINE MIR 144 262 0 394 267 50 0 chr11 78325450 78325551 -72458002 + MIR SINE MIR 44 149 -59 2321 73 0 3 chr11 78326201 78326501 -72457052 - AluY SINE Alu -12 299 1 1532 136 58 4 chr11 78327599 78327842 -72455711 + AluJb SINE Alu 6 261 -51 2086 123 7 0 chr11 78328107 78328416 -72455137 + AluSx SINE Alu 2 312 0 869 308 58 36 chr11 78328424 78328973 -72454580 + L1ME3 LINE L1 5296 5856 -306 298 284 96 106 chr11 78329195 78329498 -72454055 + L2 LINE L2 2973 3272 0 466 340 57 11 chr11 78330598 78330808 -72452745 - MIR SINE MIR -40 222 5 506 242 247 22 chr11 78331359 78331537 -72452016 - MIR SINE MIR -41 221 4 244 214 214 10 chr11 78331542 78331640 -72451913 + L2 LINE L2 3151 3268 -4 621 350 147 19 chr11 78331674 78332211 -72451342 - L3 LINE CR1 -636 941 336 739 279 97 4 chr11 78333329 78333555 -72449998 + MIR SINE MIR 2 248 -14 3396 207 104 12 chr11 78334866 78335718 -72447835 - L1ME1 LINE L1 -5 6161 5232 242 267 76 48 chr11 78336882 78336987 -72446566 + L2 LINE L2 3157 3264 -8 200 170 38 0 chr11 78337000 78337053 -72446500 + (TA)n Simple_repeat Simple_repeat 1 55 0 25 0 0 0 chr11 78337413 78337438 -72446115 + AT_rich Low_complexity Low_complexity 1 25 0 362 241 89 136 chr11 78337880 78338204 -72445349 + L2 LINE L2 3005 3313 0 241 315 225 0 chr11 78338871 78338982 -72444571 + L2 LINE L2 3137 3272 0 2214 89 0 25 chr11 78339109 78339425 -72444128 + AluSc SINE Alu 2 309 0 1516 188 0 10 chr11 78339926 78340218 -72443335 + AluJb SINE Alu 1 289 -23 388 314 145 6 chr11 78340229 78340388 -72443165 + MIR SINE MIR 20 200 -62 246 320 0 13 chr11 78340675 78340750 -72442803 - MIR SINE MIR -102 106 33 208 191 85 0 chr11 78341693 78341740 -72441813 + L2 LINE L2 3262 3312 -1 490 253 112 19 chr11 78341822 78342070 -72441483 - MIR SINE MIR 0 262 3 267 300 158 63 chr11 78342469 78342772 -72440781 - L2 LINE L2 -112 3160 2829 383 318 5 60 chr11 78343476 78343596 -72439957 - MER117 DNA MER1_type -6 191 85 2296 84 0 0 chr11 78343596 78343893 -72439660 + AluY SINE Alu 1 297 -14 383 318 5 60 chr11 78343893 78343973 -72439580 - MER117 DNA MER1_type -112 85 2 237 303 15 0 chr11 78344672 78344738 -72438815 - L2 LINE L2 -1 3271 3205 664 326 40 30 chr11 78344799 78345446 -72438107 - L1ME3A LINE L1 -137 5984 5319 355 254 18 110 chr11 78345535 78345595 -72437958 + MIR SINE MIR 20 84 -160 2415 57 0 3 chr11 78345595 78345892 -72437661 - AluY SINE Alu -15 296 1 355 254 18 110 chr11 78345892 78346008 -72437545 + MIR SINE MIR 84 182 -62 359 255 57 19 chr11 78346155 78346261 -72437292 + MIR SINE MIR 9 118 -144 2301 103 0 0 chr11 78346331 78346642 -72436911 + AluY SINE Alu 1 311 0 1907 141 0 0 chr11 78347247 78347544 -72436009 + AluSx SINE Alu 1 297 -15 2029 110 10 0 chr11 78347641 78347931 -72435622 + AluSx SINE Alu 1 293 -19 1693 129 0 4 chr11 78347942 78348197 -72435356 + AluSq SINE Alu 51 304 -9 213 290 0 86 chr11 78348197 78348290 -72435263 + MIR SINE MIR 59 143 -119 187 221 18 150 chr11 78348296 78348409 -72435144 + MIR SINE MIR 109 206 -56 211 341 148 22 chr11 78348914 78349137 -72434416 + L2 LINE L2 3022 3272 0 429 345 48 0 chr11 78349310 78349475 -72434078 + MIR3 SINE MIR 30 202 -6 220 307 10 50 chr11 78350389 78350490 -72433063 - MIR3 SINE MIR -2 206 110 286 324 63 21 chr11 78350534 78350676 -72432877 + MIR SINE MIR 66 213 -49 1159 195 67 131 chr11 78350869 78350953 -72432600 - L1MC4 LINE L1 0 8042 7954 2320 77 3 3 chr11 78350953 78351265 -72432288 + AluSp SINE Alu 2 313 0 1159 195 67 131 chr11 78351265 78351745 -72431808 - L1MC4 LINE L1 -88 7954 7514 246 329 13 0 chr11 78351774 78351853 -72431700 - L2 LINE L2 0 3272 3193 327 299 49 43 chr11 78352512 78352696 -72430857 - L2 LINE L2 -1 3312 3128 219 254 290 24 chr11 78352756 78352881 -72430672 - MIR SINE MIR -3 259 169 2173 104 3 0 chr11 78352881 78353179 -72430374 + AluSg SINE Alu 1 299 -11 219 254 290 24 chr11 78353179 78353222 -72430331 - MIR SINE MIR -93 169 46 561 321 203 22 chr11 78353577 78354026 -72429527 + L3 LINE CR1 821 1350 -227 187 319 0 0 chr11 78354028 78354075 -72429478 - L2 LINE L2 -16 3256 3210 4724 136 22 46 chr11 78354378 78354399 -72429154 + L1MB7 LINE L1 5313 5333 -851 2424 83 0 0 chr11 78354399 78354711 -72428842 + AluSx SINE Alu 1 312 0 4724 136 22 46 chr11 78354711 78355562 -72427991 + L1MB7 LINE L1 5333 6164 -20 204 279 147 37 chr11 78355605 78355741 -72427812 + L3 LINE CR1 1419 1569 -8 592 270 13 13 chr11 78356328 78356480 -72427073 - MIR SINE MIR -83 179 28 2268 97 3 0 chr11 78356520 78356828 -72426725 + AluSg SINE Alu 1 309 -1 1651 134 31 132 chr11 78357549 78357936 -72425617 + MER7A DNA MER2_type 1 346 0 261 320 94 47 chr11 78358332 78358566 -72424987 + L2 LINE L2 2579 2823 -491 201 281 91 25 chr11 78360963 78361084 -72422469 + MIR3 SINE MIR 13 141 -67 501 209 31 39 chr11 78361501 78361630 -72421923 + MIR3 SINE MIR 15 142 -66 274 174 0 0 chr11 78362364 78362410 -72421143 - L2 LINE L2 -14 3258 3213 474 310 35 25 chr11 78362757 78362954 -72420599 - MIR3 SINE MIR -1 207 9 1951 76 69 0 chr11 78363397 78363712 -72419841 + AluSc SINE Alu 1 333 0 300 261 11 45 chr11 78363925 78364013 -72419540 - MIR3 SINE MIR -43 165 81 2352 73 0 0 chr11 78364927 78365230 -72418323 - AluSx SINE Alu -9 303 1 2199 95 0 10 chr11 78365411 78365716 -72417837 - AluSx SINE Alu -10 302 1 236 315 24 55 chr11 78365730 78365857 -72417696 - MIR SINE MIR -46 216 94 776 208 181 57 chr11 78366026 78366256 -72417297 + L2 LINE L2 3016 3285 -28 2267 90 0 3 chr11 78366256 78366568 -72416985 - AluY SINE Alu 0 311 1 776 208 181 57 chr11 78366568 78366602 -72416951 + L2 LINE L2 3285 3313 0 555 292 58 25 chr11 78366616 78366859 -72416694 + MIR SINE MIR 12 262 0 1510 131 75 18 chr11 78366955 78367115 -72416438 - AluJo SINE Alu -14 298 114 213 39 0 0 chr11 78367115 78367141 -72416412 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1510 131 75 18 chr11 78367141 78367262 -72416291 - AluJo SINE Alu -198 114 1 2251 84 3 10 chr11 78367270 78367569 -72415984 - AluSp SINE Alu -16 297 1 1106 147 277 13 chr11 78368019 78368257 -72415296 + AluJo SINE Alu 1 301 -1 2122 101 7 7 chr11 78368343 78368650 -72414903 + AluSx SINE Alu 1 307 -5 739 193 71 0 chr11 78368992 78369132 -72414421 + L1MC4a LINE L1 6445 6594 -1214 1543 114 13 0 chr11 78369134 78369362 -72414191 - AluSg/x SINE Alu -5 307 77 716 165 0 0 chr11 78369397 78369506 -72414047 - AluSq/x SINE Alu -204 109 1 1611 193 87 81 chr11 78369510 78369924 -72413629 + L1MC4a LINE L1 6599 7009 -799 204 97 0 0 chr11 78369924 78369955 -72413598 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 1611 193 87 81 chr11 78369955 78369980 -72413573 + L1MC4a LINE L1 7009 7032 -776 2306 52 16 26 chr11 78369980 78370285 -72413268 - AluY SINE Alu -9 302 1 1611 193 87 81 chr11 78370285 78370411 -72413142 + L1MC4a LINE L1 7032 7156 -652 1641 153 7 30 chr11 78370411 78370711 -72412842 + AluJo SINE Alu 12 304 -8 1611 193 87 81 chr11 78370711 78370801 -72412752 + L1MC4a LINE L1 7156 7244 -564 2386 79 0 0 chr11 78370801 78371091 -72412462 + AluSg SINE Alu 1 290 -20 1611 193 87 81 chr11 78371091 78371358 -72412195 + L1MC4a LINE L1 7244 7474 -334 1285 223 106 61 chr11 78371365 78371554 -72411999 - MLT1E3 LTR MaLR 0 624 445 2255 114 0 7 chr11 78371554 78371853 -72411700 - AluSq SINE Alu -12 301 5 1285 223 106 61 chr11 78371853 78372125 -72411428 - MLT1E3 LTR MaLR -179 445 142 2339 84 3 3 chr11 78372266 78372565 -72410988 + AluY SINE Alu 1 299 -12 186 218 0 36 chr11 78372668 78372723 -72410830 - MIR SINE MIR 0 262 210 258 255 71 31 chr11 78372916 78373014 -72410539 - MIR SINE MIR -16 246 145 258 32 0 0 chr11 78373080 78373111 -72410442 + (TG)n Simple_repeat Simple_repeat 2 32 0 377 279 105 36 chr11 78373435 78373855 -72409698 + L1MC4a LINE L1 4883 5331 -815 263 367 31 46 chr11 78373856 78374052 -72409501 - MER91A DNA MER1_type 0 196 4 1692 213 58 19 chr11 78374052 78374910 -72408643 + L1ME1 LINE L1 4957 5733 -433 270 118 0 0 chr11 78374910 78374944 -72408609 - LOR1a LTR ERV1 0 497 464 1884 154 71 6 chr11 78375048 78375385 -72408168 - LOR1b LTR ERV1 -102 359 1 1618 156 39 104 chr11 78375386 78375847 -72407706 + L1ME1 LINE L1 5731 6161 -5 422 234 196 35 chr11 78375853 78375920 -72407633 + L1MC4a LINE L1 5426 5481 -823 243 88 0 0 chr11 78375920 78375954 -72407599 + (TA)n Simple_repeat Simple_repeat 1 34 0 422 234 196 35 chr11 78375954 78376292 -72407261 + L1MC4a LINE L1 5481 5573 -731 2611 50 0 31 chr11 78376325 78376645 -72406908 + AluY SINE Alu 1 310 -1 237 65 0 0 chr11 78377026 78377057 -72406496 + (CATTC)n Simple_repeat Simple_repeat 5 35 0 372 260 20 0 chr11 78377286 78377386 -72406167 - L2 LINE L2 -193 3079 2978 213 39 0 0 chr11 78377482 78377508 -72406045 + (T)n Simple_repeat Simple_repeat 1 26 0 239 298 36 0 chr11 78377576 78377660 -72405893 - MIR SINE MIR -129 133 47 297 223 146 0 chr11 78378114 78378217 -72405336 - MIR SINE MIR -14 248 131 204 40 0 0 chr11 78378288 78378313 -72405240 + (TA)n Simple_repeat Simple_repeat 2 26 0 359 269 65 0 chr11 78378314 78378407 -72405146 - MIR SINE MIR -152 110 12 509 237 92 7 chr11 78379017 78379169 -72404384 - LTR16A LTR ERVL 0 450 286 2432 91 26 50 chr11 78379176 78379227 -72404326 - THE1C LTR MaLR 0 375 324 2379 59 20 26 chr11 78379227 78379530 -72404023 - AluY SINE Alu -10 301 1 2432 91 26 50 chr11 78379530 78379862 -72403691 - THE1C LTR MaLR -51 324 1 257 367 33 0 chr11 78379987 78380107 -72403446 - LTR16A LTR ERVL -324 126 3 2543 54 0 3 chr11 78380382 78380676 -72402877 + AluY SINE Alu 1 293 -18 32 26 0 0 chr11 78380693 78380732 -72402821 + AT_rich Low_complexity Low_complexity 1 39 0 350 143 0 0 chr11 78380815 78380864 -72402689 + Alu SINE Alu 2 50 -250 2213 96 0 0 chr11 78381233 78381594 -72401959 - AluY SINE Alu 0 361 1 1508 236 115 55 chr11 78381680 78382167 -72401386 + MLT1G1 LTR MaLR 73 588 -7 523 202 187 50 chr11 78382205 78382257 -72401296 + L1ME LINE L1 5216 5259 -905 1585 208 61 35 chr11 78382257 78382632 -72400921 - MLT1B LTR MaLR -4 386 2 523 202 187 50 chr11 78382632 78382833 -72400720 + L1ME LINE L1 5259 5503 -661 1561 322 39 56 chr11 78382834 78383283 -72400270 + ERVL LTR ERVL 2487 2921 -2843 2358 110 0 0 chr11 78383283 78383591 -72399962 - AluSg1 SINE Alu -1 308 1 1561 322 39 56 chr11 78383591 78383839 -72399714 + ERVL LTR ERVL 2921 3172 -2592 563 269 69 61 chr11 78383844 78384089 -72399464 + ERVL LTR ERVL 3498 3744 -2020 790 311 50 33 chr11 78384328 78385153 -72398400 + ERVL LTR ERVL 4353 5218 -436 2133 304 20 22 chr11 78385599 78385880 -72397673 - ERVL LTR ERVL -2395 3369 3089 2048 134 0 29 chr11 78385880 78386193 -72397360 + AluSx SINE Alu 5 308 -4 2133 304 20 22 chr11 78386193 78386914 -72396639 - ERVL LTR ERVL -2675 3089 2292 2459 88 3 0 chr11 78386923 78387228 -72396325 - AluSq SINE Alu -7 306 1 528 278 174 30 chr11 78387252 78387551 -72396002 + ERVL LTR ERVL 4764 5105 -659 1087 195 10 19 chr11 78387554 78387759 -72395794 + AluJo SINE Alu 85 287 -25 970 111 11 17 chr11 78387773 78387954 -72395599 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 636 169 13 29 chr11 78387968 78388292 -72395261 + GA-rich Low_complexity Low_complexity 1 318 0 382 289 79 63 chr11 78388292 78388607 -72394946 + ERVL LTR ERVL 5049 5368 -286 1862 275 161 1 chr11 78389395 78390132 -72393421 - L2 LINE L2 -2431 883 29 2202 83 0 28 chr11 78390914 78391232 -72392321 + AluSx SINE Alu 1 310 0 2153 112 0 3 chr11 78391239 78391525 -72392028 + AluSc SINE Alu 7 291 -18 2096 108 0 4 chr11 78391525 78391839 -72391714 + AluSc SINE Alu 1 313 0 781 195 119 0 chr11 78392006 78392165 -72391388 - AluJb SINE Alu 0 312 135 276 292 50 68 chr11 78392299 78392460 -72391093 - L1MC4a LINE L1 -971 6837 6680 24 0 0 0 chr11 78393437 78393461 -72390092 + AT_rich Low_complexity Low_complexity 1 24 0 652 301 73 47 chr11 78393540 78394032 -72389521 - MLT1K LTR MaLR 0 588 84 697 150 29 0 chr11 78394197 78394337 -72389216 + CT-rich Low_complexity Low_complexity 1 144 0 2018 150 0 3 chr11 78394337 78394637 -72388916 - AluJb SINE Alu -11 301 3 226 205 320 0 chr11 78394882 78394960 -72388593 - HAL1 LINE L1 -604 1903 1801 2327 92 0 0 chr11 78394997 78395289 -72388264 - AluSx SINE Alu -20 292 1 21 0 0 0 chr11 78395661 78395682 -72387871 + AT_rich Low_complexity Low_complexity 1 21 0 2184 108 37 0 chr11 78395792 78396088 -72387465 + AluSx SINE Alu 1 307 -5 315 297 81 7 chr11 78396493 78396641 -72386912 + HAL1 LINE L1 739 897 -1610 1842 150 3 32 chr11 78396667 78396808 -72386745 + AluJo SINE Alu 5 149 -163 2582 63 0 0 chr11 78396808 78397109 -72386444 + AluY SINE Alu 1 301 -10 1842 150 3 32 chr11 78397109 78397281 -72386272 + AluJo SINE Alu 149 309 -3 1731 112 119 8 chr11 78397338 78397598 -72385955 + AluSg1 SINE Alu 1 289 -20 1302 299 48 13 chr11 78397637 78398173 -72385380 + HAL1 LINE L1 1174 1728 -779 2064 130 3 3 chr11 78398173 78398466 -72385087 + AluSg SINE Alu 1 293 -17 2473 63 3 7 chr11 78398466 78398767 -72384786 + AluY SINE Alu 1 300 -11 450 315 73 6 chr11 78400521 78400686 -72382867 + MER91A DNA MER1_type 1 176 -20 216 263 79 26 chr11 78400685 78400761 -72382792 + MER91A DNA MER1_type 90 169 -27 * 927 269 98 40 chr11 78401006 78401385 -72382168 + LTR16C LTR ERVL 91 491 0 2128 116 33 0 chr11 78401639 78401940 -72381613 + AluSx SINE Alu 1 311 -1 1576 153 17 42 chr11 78403054 78403341 -72380212 - AluJo SINE Alu -15 297 18 216 0 0 0 chr11 78403578 78403602 -72379951 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2251 92 3 0 chr11 78403616 78403900 -72379653 - AluSg SINE Alu -25 285 1 1301 360 56 13 chr11 78404600 78405223 -72378330 + ERVL LTR ERVL 1574 2223 -3541 1463 306 29 6 chr11 78405292 78405779 -72377774 + ERVL LTR ERVL 3961 4458 -1306 1345 157 4 38 chr11 78405784 78406020 -72377533 - AluJo SINE Alu -12 300 73 383 188 0 0 chr11 78406098 78406167 -72377386 - AluJo SINE Alu -233 69 1 1489 285 53 54 chr11 78406168 78406775 -72376778 + ERVL LTR ERVL 4475 5080 -684 1467 188 0 56 chr11 78407257 78407577 -72375976 + AluJo SINE Alu 1 302 -10 1991 136 13 7 chr11 78408205 78408514 -72375039 + AluJb SINE Alu 1 311 -1 825 144 0 36 chr11 78410224 78410363 -72373190 - AluJb SINE Alu -178 134 1 2445 72 3 7 chr11 78410726 78411032 -72372521 - AluY SINE Alu -6 305 1 1655 162 24 24 chr11 78411039 78411336 -72372217 - AluJo SINE Alu -15 297 1 1139 169 4 84 chr11 78411656 78411708 -72371845 - MER20 DNA MER1_type 0 219 164 827 144 0 8 chr11 78411708 78411840 -72371713 - FLAM_C SINE Alu 0 133 3 1139 169 4 84 chr11 78411840 78412024 -72371529 - MER20 DNA MER1_type -55 164 2 434 194 21 156 chr11 78412456 78412570 -72370983 - MIR SINE MIR -4 258 177 2464 63 0 7 chr11 78412570 78412870 -72370683 + AluY SINE Alu 2 299 -12 434 194 21 156 chr11 78412870 78412941 -72370612 - MIR SINE MIR -85 177 98 2348 82 3 3 chr11 78413039 78413343 -72370210 - AluSc SINE Alu -5 304 1 207 298 100 119 chr11 78413575 78414004 -72369549 - L2 LINE L2 -28 3244 2824 1076 216 22 0 chr11 78414044 78414266 -72369287 + MIR SINE MIR 15 241 -21 586 234 109 46 chr11 78414544 78414812 -72368741 + L1ME3 LINE L1 4780 5060 -1086 680 168 12 60 chr11 78414823 78414907 -72368646 + L1ME3 LINE L1 5119 5193 -953 2079 133 17 0 chr11 78414907 78415201 -72368352 + AluSx SINE Alu 1 299 -13 680 168 12 60 chr11 78415201 78415283 -72368270 + L1ME3 LINE L1 5193 5277 -869 1161 219 53 104 chr11 78415315 78415625 -72367928 + L1ME3 LINE L1 5750 6033 -129 1838 97 97 0 chr11 78415625 78415872 -72367681 - AluSq SINE Alu -32 281 11 1161 219 53 104 chr11 78415872 78415994 -72367559 + L1ME3 LINE L1 6033 6160 -2 2284 89 0 7 chr11 78415997 78416290 -72367263 - AluY SINE Alu -20 291 1 6397 190 74 105 chr11 78416624 78417427 -72366126 + L1MDa LINE L1 19 845 -5865 1570 187 34 73 chr11 78417427 78417812 -72365741 - MLT1A2 LTR MaLR -4 370 1 6397 190 74 105 chr11 78417812 78418444 -72365109 + L1MDa LINE L1 845 1495 -5215 815 128 0 32 chr11 78418444 78418569 -72364984 + FLAM_C SINE Alu 6 126 -17 6397 190 74 105 chr11 78418569 78419428 -72364125 + L1MDa LINE L1 1495 2543 -4167 573 51 0 0 chr11 78419428 78419506 -72364047 + L1PB1 LINE L1 6074 6151 0 6397 190 74 105 chr11 78419506 78419776 -72363777 + L1MDa LINE L1 2543 2820 -3890 982 191 0 6 chr11 78419786 78419964 -72363589 + L1MC3 LINE L1 7406 7582 -203 940 169 56 24 chr11 78419965 78420162 -72363391 + L1MC2 LINE L1 6125 6331 -13 2126 127 7 3 chr11 78420162 78420470 -72363083 + AluSx SINE Alu 1 309 -3 940 169 56 24 chr11 78420470 78420485 -72363068 + L1MC2 LINE L1 6331 6344 0 295 123 233 0 chr11 78420637 78420710 -72362843 + L1ME LINE L1 5684 5773 -391 1414 206 155 65 chr11 78420716 78421193 -72362360 + MLT2B1 LTR ERVL 1 520 0 860 266 62 46 chr11 78421197 78421553 -72362000 + L1M4 LINE L1 3654 4022 -2124 396 0 0 0 chr11 78421553 78421597 -72361956 + (CA)n Simple_repeat Simple_repeat 2 45 0 860 266 62 46 chr11 78421597 78421739 -72361814 + L1M4 LINE L1 4022 4160 -1986 803 216 34 49 chr11 78421749 78421852 -72361701 + AluJo SINE Alu 1 101 -211 2215 115 3 3 chr11 78421852 78422164 -72361389 - AluSx SINE Alu 0 312 1 803 216 34 49 chr11 78422164 78422264 -72361289 + AluJo SINE Alu 101 201 -111 2511 52 0 0 chr11 78422535 78422840 -72360713 + AluY SINE Alu 1 305 -6 2331 68 0 19 chr11 78423912 78424222 -72359331 - AluY SINE Alu -7 304 1 2316 76 7 0 chr11 78424568 78424869 -72358684 - AluSp SINE Alu -10 303 1 572 208 78 26 chr11 78425048 78425202 -72358351 + MIR SINE MIR 98 259 -3 22 70 0 0 chr11 78425206 78425249 -72358304 + AT_rich Low_complexity Low_complexity 1 43 0 547 221 107 14 chr11 78425305 78425445 -72358108 + MLT1I LTR MaLR 26 178 -231 1701 138 11 7 chr11 78425602 78425885 -72357668 - AluSg SINE Alu -4 306 23 2276 67 3 22 chr11 78426206 78426518 -72357035 - AluY SINE Alu -5 306 1 9044 215 20 10 chr11 78426518 78427177 -72356376 - L1 LINE L1 -1317 4829 4178 2379 76 0 0 chr11 78427177 78427478 -72356075 - AluY SINE Alu -10 301 1 9044 215 20 10 chr11 78427478 78428997 -72354556 - L1 LINE L1 -1968 4178 2630 2413 84 0 0 chr11 78429036 78429347 -72354206 + AluY SINE Alu 1 311 0 1399 199 29 7 chr11 78430866 78431142 -72352411 + AluJo SINE Alu 1 282 -30 537 199 0 0 chr11 78431158 78431289 -72352264 + GA-rich Low_complexity Low_complexity 4 134 0 535 316 181 26 chr11 78431546 78432011 -72351542 - L2 LINE L2 -425 2889 2353 222 215 154 31 chr11 78432061 78432126 -72351427 - L2 LINE L2 0 3272 3200 438 265 126 7 chr11 78432197 78432348 -72351205 + MER21B LTR ERV1 333 501 -362 1645 145 25 7 chr11 78432496 78432647 -72350906 - AluSx SINE Alu -24 288 128 207 0 0 0 chr11 78432647 78432670 -72350883 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1645 145 25 7 chr11 78432670 78432801 -72350752 - AluSx SINE Alu -184 128 1 1885 149 3 7 chr11 78432949 78433245 -72350308 - AluJb SINE Alu -15 297 3 1413 140 0 5 chr11 78433804 78434026 -72349527 + AluJb SINE Alu 71 291 -21 621 197 55 52 chr11 78434103 78434308 -72349245 - MER33 DNA MER1_type -235 89 1 696 229 60 6 chr11 78434309 78434475 -72349078 + MIR SINE MIR 67 241 -21 1927 159 0 3 chr11 78434594 78434890 -72348663 + AluJo SINE Alu 1 295 -17 1926 148 0 22 chr11 78434890 78435208 -72348345 + AluSx SINE Alu 1 311 -1 222 200 0 22 chr11 78435960 78436005 -72347548 + CT-rich Low_complexity Low_complexity 2 45 0 1818 142 30 7 chr11 78436006 78436308 -72347245 - AluJo SINE Alu -3 309 1 197 116 0 47 chr11 78436318 78436361 -72347192 + (TCTCCC)n Simple_repeat Simple_repeat 3 43 0 439 268 99 59 chr11 78436869 78437122 -72346431 - L1MC4a LINE L1 -44 6077 5827 319 282 77 17 chr11 78437098 78437215 -72346338 - L1MC4a LINE L1 -1485 4661 4538 * 433 231 154 8 chr11 78437236 78437366 -72346187 + MER69 DNA AcHobo 1 149 -2377 2608 143 52 2 chr11 78437372 78437778 -72345775 - MSTB LTR MaLR 0 426 1 1449 311 63 49 chr11 78437980 78438333 -72345220 - L1MC4a LINE L1 -744 5402 5056 1548 108 104 12 chr11 78438333 78438574 -72344979 - AluSg SINE Alu -47 263 1 1449 311 63 49 chr11 78438574 78439074 -72344479 - L1MC4a LINE L1 -1090 5056 4565 1663 141 33 49 chr11 78439074 78439380 -72344173 - AluJo SINE Alu -11 301 1 1449 311 63 49 chr11 78439380 78439401 -72344152 - L1MC4a LINE L1 -1581 4565 4546 1919 134 26 3 chr11 78439401 78439706 -72343847 - AluSx SINE Alu 0 312 1 1449 311 63 49 chr11 78439706 78440405 -72343148 - L1MC4a LINE L1 -1600 4546 4236 1910 139 3 3 chr11 78440405 78440700 -72342853 - AluSx SINE Alu 0 312 18 1449 311 63 49 chr11 78440700 78441078 -72342475 - L1MC4a LINE L1 -1910 4236 3865 220 286 181 0 chr11 78441568 78441701 -72341852 - L2 LINE L2 -207 3065 2909 240 311 67 15 chr11 78442615 78442750 -72340803 - L2 LINE L2 -846 2468 2327 327 49 0 0 chr11 78443679 78443720 -72339833 + (GA)n Simple_repeat Simple_repeat 1 41 0 182 219 232 0 chr11 78443877 78443959 -72339594 + MIR SINE MIR 34 134 -74 243 259 71 12 chr11 78444574 78444659 -72338894 - L3 LINE CR1 -67 1510 1421 439 295 0 23 chr11 78445148 78445277 -72338276 + L2 LINE L2 3188 3313 0 246 62 0 0 chr11 78445673 78445705 -72337848 + (TTA)n Simple_repeat Simple_repeat 1 32 0 1875 146 0 0 chr11 78445708 78445989 -72337564 - AluJo SINE Alu -30 282 2 199 296 74 28 chr11 78446026 78446134 -72337419 - MIR3 SINE MIR -84 124 12 279 130 0 0 chr11 78446765 78446819 -72336734 + (CA)n Simple_repeat Simple_repeat 2 55 0 * 339 65 0 0 chr11 78446818 78446864 -72336689 + (TC)n Simple_repeat Simple_repeat 2 47 0 228 305 8 46 chr11 78447261 78447392 -72336161 + CT-rich Low_complexity Low_complexity 5 130 0 252 293 0 0 chr11 78448256 78448314 -72335239 + MIR SINE MIR 204 261 -1 331 315 56 52 chr11 78448966 78449179 -72334374 - L2 LINE L2 -128 3144 2931 339 198 89 10 chr11 78449512 78449613 -72333940 - MIR SINE MIR -79 129 21 573 258 0 8 chr11 78449621 78449749 -72333804 - MER94 DNA DNA -2 132 6 527 261 117 32 chr11 78449881 78450069 -72333484 + MIR SINE MIR 29 232 -30 461 262 157 17 chr11 78451136 78451308 -72332245 + MIR SINE MIR 31 226 -36 2408 68 0 3 chr11 78452818 78453125 -72330428 - AluY SINE Alu -5 306 1 852 136 8 14 chr11 78453217 78453457 -72330096 + AluJo SINE Alu 37 311 -1 437 316 22 6 chr11 78453772 78453949 -72329604 - MIR SINE MIR -52 210 30 288 399 0 0 chr11 78454527 78454695 -72328858 + G-rich Low_complexity Low_complexity 1 168 0 23 33 0 0 chr11 78454741 78454771 -72328782 + GC_rich Low_complexity Low_complexity 1 30 0 242 220 34 0 chr11 78455240 78455299 -72328254 + MIR SINE MIR 85 145 -117 204 293 193 32 chr11 78455649 78455929 -72327624 - L2 LINE L2 -82 3190 2866 323 336 25 17 chr11 78456405 78456524 -72327029 + MIR SINE MIR 34 153 -55 327 250 129 29 chr11 78457127 78457267 -72326286 - MIR3 SINE MIR -34 174 21 2130 74 42 0 chr11 78457296 78457580 -72325973 - AluY SINE Alu -15 296 1 535 269 76 23 chr11 78457769 78457975 -72325578 - MIR SINE MIR -40 222 6 2347 75 0 0 chr11 78458648 78458942 -72324611 - AluSg SINE Alu -16 294 1 793 241 75 14 chr11 78458978 78459193 -72324360 - MIR SINE MIR -3 259 32 268 313 61 8 chr11 78459498 78459629 -72323924 - MIR SINE MIR -117 145 8 190 267 93 12 chr11 78460302 78460388 -72323165 + MIR SINE MIR 37 129 -79 2471 43 0 49 chr11 78461678 78462005 -72321548 + AluY SINE Alu 1 311 0 209 306 180 0 chr11 78462772 78462883 -72320670 + MIR SINE MIR 20 150 -58 586 261 176 25 chr11 78463919 78464237 -72319316 - L2 LINE L2 0 3313 2948 310 232 105 11 chr11 78464283 78464378 -72319175 - L2 LINE L2 -510 2804 2701 343 217 43 0 chr11 78464388 78464480 -72319073 - MIR SINE MIR -87 175 80 505 270 57 0 chr11 78464726 78464885 -72318668 + MIR SINE MIR 81 248 -14 567 265 34 78 chr11 78466953 78467157 -72316396 + MER91A DNA MER1_type 1 195 -1 300 218 71 22 chr11 78467527 78467641 -72315912 - MIR SINE MIR -66 142 51 540 239 107 15 chr11 78468947 78469152 -72314401 + L2 LINE L2 2867 3090 -182 1948 133 10 7 chr11 78469258 78469560 -72313993 + AluJb SINE Alu 1 303 -9 241 196 0 36 chr11 78470315 78470371 -72313182 + MIR SINE MIR 87 140 -68 328 222 0 0 chr11 78470694 78470757 -72312796 + MER96B DNA MER1_type? 2 64 -353 1046 157 0 22 chr11 78470757 78470942 -72312611 + AluJb SINE Alu 119 299 -13 718 168 31 41 chr11 78470978 78471174 -72312379 + MER96B DNA MER1_type? 66 259 -158 236 266 25 51 chr11 78471489 78471568 -72311985 + MIR SINE MIR 167 243 -19 1940 109 56 3 chr11 78471569 78471853 -72311700 - AluSx SINE Alu -13 299 1 443 52 0 17 chr11 78471910 78471968 -72311585 + Alu SINE Alu 11 67 -251 304 264 44 0 chr11 78472106 78472197 -72311356 + L2 LINE L2 2966 3060 -212 266 304 51 0 chr11 78472766 78472869 -72310684 + MIR SINE MIR 54 165 -62 2487 68 0 0 chr11 78472951 78473260 -72310293 - AluY SINE Alu 0 311 1 237 247 51 51 chr11 78473938 78474096 -72309457 + (TCTCTG)n Simple_repeat Simple_repeat 6 163 0 1686 204 3 3 chr11 78474831 78475135 -72308418 + AluJo SINE Alu 2 305 -7 209 224 207 0 chr11 78476029 78476087 -72307466 - MIR SINE MIR -87 121 52 492 192 26 64 chr11 78477454 78477618 -72305935 + MIR SINE MIR 45 202 -6 180 316 53 0 chr11 78477620 78477696 -72305857 + L2 LINE L2 2234 2313 -1001 2262 96 3 10 chr11 78477757 78478071 -72305482 - AluSx SINE Alu 0 312 1 417 325 75 15 chr11 78479024 78479327 -72304226 + L2 LINE L2 2845 3160 -112 395 308 107 12 chr11 78479789 78479958 -72303595 - MIR SINE MIR -59 203 19 223 309 231 11 chr11 78479963 78480313 -72303240 - L2 LINE L2 -457 2857 2431 292 289 70 7 chr11 78480405 78480547 -72303006 - L2 LINE L2 -213 3100 2950 442 239 102 51 chr11 78480564 78480761 -72302792 - L2 LINE L2 -526 2788 2582 194 239 0 22 chr11 78481109 78481155 -72302398 - L3 LINE CR1 -6 1571 1527 569 176 65 39 chr11 78481200 78481353 -72302200 + MER58C DNA MER1_type 59 215 0 191 384 0 23 chr11 78481353 78481439 -72302114 - MIR3 SINE MIR -48 160 77 315 323 82 19 chr11 78481736 78481894 -72301659 - MIR SINE MIR -28 234 67 298 265 10 69 chr11 78481892 78481994 -72301559 + L2 LINE L2 3212 3307 -6 * 191 350 78 0 chr11 78482781 78482884 -72300669 - MIR SINE MIR -68 140 30 221 257 14 27 chr11 78483544 78483618 -72299935 + CT-rich Low_complexity Low_complexity 5 77 0 1067 241 215 17 chr11 78485508 78485823 -72297730 + L2 LINE L2 2729 2980 -333 2216 75 21 0 chr11 78485823 78486104 -72297449 - AluSp SINE Alu -26 287 1 1067 241 215 17 chr11 78486104 78486287 -72297266 + L2 LINE L2 2980 3311 -2 215 346 53 8 chr11 78487449 78487582 -72295971 - MIR3 SINE MIR -53 155 17 376 332 48 11 chr11 78488083 78488270 -72295283 + L3 LINE CR1 1384 1577 0 220 229 100 0 chr11 78488471 78488541 -72295012 - L2 LINE L2 -177 3095 3019 1819 127 117 19 chr11 78490426 78490733 -72292820 + MER1B DNA MER1_type 1 337 0 283 230 230 48 chr11 78492139 78492304 -72291249 - L2 LINE L2 -1 3312 3118 285 348 72 27 chr11 78494511 78494732 -72288821 - L3 LINE CR1 -56 1521 1291 905 256 0 5 chr11 78494754 78494977 -72288576 + MER1B DNA MER1_type 47 268 -71 492 168 89 0 chr11 78495854 78495955 -72287598 + MER1B DNA MER1_type 230 339 0 182 404 21 0 chr11 78496108 78496202 -72287351 - L3 LINE CR1 -522 1055 960 333 259 180 0 chr11 78496477 78496616 -72286937 - MIR SINE MIR -52 210 47 1595 154 40 0 chr11 78497062 78497315 -72286238 + AluJb SINE Alu 1 263 -49 418 223 66 58 chr11 78499389 78499458 -72284095 + MER5A DNA MER1_type 1 73 -116 1758 155 54 3 chr11 78499458 78499754 -72283799 + AluJo SINE Alu 2 312 0 418 223 66 58 chr11 78499754 78499805 -72283748 + MER5A DNA MER1_type 73 122 -67 340 310 129 74 chr11 78500441 78501131 -72282422 - L2 LINE L2 -5 3267 2514 223 229 43 29 chr11 78504157 78504227 -72279326 - MIR SINE MIR -77 131 61 531 306 17 0 chr11 78505087 78505260 -72278293 + MIR SINE MIR 52 227 -35 200 345 35 0 chr11 78505333 78505391 -72278162 - L2 LINE L2 -7 3306 3247 223 234 0 16 chr11 78506389 78506473 -72277080 + C-rich Low_complexity Low_complexity 1 82 0 264 167 274 0 chr11 78506942 78507026 -72276527 - MIR SINE MIR -82 126 20 193 286 143 11 chr11 78507160 78507251 -72276302 - MIR SINE MIR -10 252 150 343 294 132 0 chr11 78508077 78508213 -72275340 + MIR3 SINE MIR 48 201 -7 307 349 165 9 chr11 78509543 78509917 -72273636 - L2 LINE L2 -468 2846 2532 1920 68 3 75 chr11 78509917 78510211 -72273342 + AluSg SINE Alu 37 309 -1 307 349 165 9 chr11 78510211 78510532 -72273021 - L2 LINE L2 -782 2532 2042 406 249 127 56 chr11 78511091 78511288 -72272265 - MIR SINE MIR -42 220 10 182 322 60 86 chr11 78512115 78512348 -72271205 + L2 LINE L2 2976 3202 -70 213 346 22 0 chr11 78512976 78513112 -72270441 + CT-rich Low_complexity Low_complexity 2 140 0 * 282 254 16 74 chr11 78513032 78513250 -72270303 + (TCTCTG)n Simple_repeat Simple_repeat 1 205 0 225 159 0 0 chr11 78513257 78513301 -72270252 + CT-rich Low_complexity Low_complexity 2 45 0 195 42 0 0 chr11 78514372 78514396 -72269157 + (TG)n Simple_repeat Simple_repeat 2 25 0 333 302 11 22 chr11 78514664 78514846 -72268707 + (TG)n Simple_repeat Simple_repeat 1 180 0 275 296 11 11 chr11 78515211 78515299 -72268254 - L2 LINE L2 -529 2785 2698 1948 142 0 37 chr11 78515309 78515633 -72267920 + AluSx SINE Alu 1 312 0 186 43 0 0 chr11 78516287 78516310 -72267243 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 531 281 211 20 chr11 78516468 78516767 -72266786 - L2 LINE L2 0 3272 2917 270 333 38 31 chr11 78516795 78516954 -72266599 - L3 LINE CR1 -13 1564 1405 181 336 52 47 chr11 78517559 78517791 -72265762 - L2 LINE L2 -223 3049 2817 295 296 88 16 chr11 78518408 78518533 -72265020 + L3b LINE CR1 1317 1450 -133 354 305 71 64 chr11 78518547 78518797 -72264756 + MIR SINE MIR 4 261 -1 445 322 161 0 chr11 78519370 78519575 -72263978 - MIR SINE MIR -24 238 1 841 193 58 0 chr11 78519910 78520081 -72263472 - AluJo SINE Alu -11 301 121 258 337 12 0 chr11 78520259 78520345 -72263208 + L3b LINE CR1 1277 1363 -220 2149 123 0 0 chr11 78520670 78520971 -72262582 - AluSx SINE Alu -11 301 1 296 249 35 19 chr11 78521402 78521515 -72262038 - MIR SINE MIR -62 146 80 200 128 0 26 chr11 78521856 78521895 -72261658 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 304 308 106 45 chr11 78521987 78522185 -72261368 + L3 LINE CR1 1347 1556 -21 2127 129 3 0 chr11 78522689 78522991 -72260562 + AluSp SINE Alu 1 303 -10 2573 52 0 0 chr11 78523122 78523430 -72260123 + AluY SINE Alu 1 308 -3 622 269 121 44 chr11 78523462 78523916 -72259637 - LTR33 LTR ERVL -22 499 11 346 233 33 0 chr11 78523917 78524007 -72259546 - MIR SINE MIR -79 129 37 2318 94 7 0 chr11 78524039 78524348 -72259205 - AluSx SINE Alu -1 311 1 320 340 5 75 chr11 78524634 78524846 -72258707 - L2 LINE L2 -172 3100 2904 331 257 47 74 chr11 78526088 78526236 -72257317 + L2 LINE L2 2918 3061 -211 2097 106 0 0 chr11 78526462 78526772 -72256781 - AluSx SINE Alu 0 310 1 569 314 75 5 chr11 78527094 78527282 -72256271 + MIR SINE MIR 14 214 -48 626 174 77 0 chr11 78527563 78527718 -72255835 - L1ME1 LINE L1 -4 6162 5996 235 306 66 41 chr11 78528410 78528531 -72255022 + L3b LINE CR1 1291 1414 -169 233 171 0 0 chr11 78528534 78528575 -72254978 + L2 LINE L2 3189 3229 -84 493 309 34 22 chr11 78528610 78528788 -72254765 + MIR SINE MIR 29 208 -54 793 147 31 8 chr11 78528803 78528932 -72254621 + FLAM_C SINE Alu 2 133 0 372 273 23 47 chr11 78528951 78529079 -72254474 + L2 LINE L2 3186 3310 -3 871 117 0 36 chr11 78529161 78529298 -72254255 + FLAM_C SINE Alu 1 132 -11 288 226 86 21 chr11 78529685 78529778 -72253775 + MIR SINE MIR 130 228 -34 248 300 0 0 chr11 78530407 78530467 -72253086 + CT-rich Low_complexity Low_complexity 1 60 0 303 198 86 0 chr11 78530935 78531016 -72252537 - MIR SINE MIR -64 144 57 192 358 42 0 chr11 78531247 78531342 -72252211 - MIR SINE MIR -87 121 23 357 280 40 10 chr11 78531512 78531612 -72251941 - MIR SINE MIR -62 146 44 446 290 39 7 chr11 78532087 78532242 -72251311 - MIR3 SINE MIR -45 163 4 282 160 0 0 chr11 78532255 78532305 -72251248 + (CA)n Simple_repeat Simple_repeat 1 50 0 279 282 74 74 chr11 78533379 78533528 -72250025 + MIR3 SINE MIR 40 188 -20 183 350 25 0 chr11 78533835 78533915 -72249638 + MIR SINE MIR 30 111 -97 477 264 132 11 chr11 78535002 78535176 -72248377 + MIR SINE MIR 20 214 -48 841 167 0 0 chr11 78535384 78535516 -72248037 + FLAM_A SINE Alu 1 132 -1 406 333 84 13 chr11 78536091 78536316 -72247237 - MIR SINE MIR -1 261 21 492 18 0 0 chr11 78536861 78536918 -72246635 + (TG)n Simple_repeat Simple_repeat 2 58 0 2235 88 0 7 chr11 78537479 78537775 -72245778 + AluSx SINE Alu 8 301 -11 302 306 0 45 chr11 78538018 78538129 -72245424 + L3 LINE CR1 1372 1477 -100 286 312 73 0 chr11 78538315 78538424 -72245129 - L2 LINE L2 -33 3239 3123 205 312 0 43 chr11 78538482 78538575 -72244978 - L2 LINE L2 0 3313 3225 185 359 120 18 chr11 78538642 78538859 -72244694 - L2 LINE L2 -429 2885 2647 278 307 23 0 chr11 78540430 78540518 -72243035 - MIR SINE MIR -76 132 43 190 308 0 0 chr11 78540897 78540949 -72242604 + L2 LINE L2 3262 3313 0 215 328 136 17 chr11 78540986 78541221 -72242332 - L2 LINE L2 -340 2974 2712 434 313 75 0 chr11 78541282 78541429 -72242124 + MIR SINE MIR 20 177 -85 606 222 99 6 chr11 78541820 78541982 -72241571 + MIR SINE MIR 14 190 -72 206 245 0 0 chr11 78542118 78542167 -72241386 - MER5B DNA MER1_type -4 174 126 * 258 217 60 36 chr11 78542160 78542243 -72241310 + MER5B DNA MER1_type 90 174 -4 460 247 0 0 chr11 78542510 78542603 -72240950 - MIR SINE MIR -65 143 51 2259 85 0 0 chr11 78542740 78543078 -72240475 + AluSc SINE Alu 1 338 0 193 216 162 27 chr11 78543329 78543403 -72240150 - MIR SINE MIR -69 193 110 207 332 87 31 chr11 78543579 78543775 -72239778 - L2 LINE L2 -179 3093 2887 247 291 52 82 chr11 78544322 78544456 -72239097 - MIR3 SINE MIR -73 135 6 204 132 26 0 chr11 78544949 78544987 -72238566 + C-rich Low_complexity Low_complexity 1 39 0 236 51 0 68 chr11 78545273 78545332 -72238221 + (CGGGG)n Simple_repeat Simple_repeat 3 57 0 186 71 0 0 chr11 78545382 78545410 -72238143 + (CGGG)n Simple_repeat Simple_repeat 4 31 0 215 229 37 28 chr11 78546718 78546827 -72236726 + (TG)n Simple_repeat Simple_repeat 2 111 0 213 132 0 0 chr11 78547354 78547392 -72236161 + (TG)n Simple_repeat Simple_repeat 2 39 0 278 259 134 54 chr11 78549115 78549227 -72234326 - L2 LINE L2 0 3313 3193 225 327 77 0 chr11 78549326 78549430 -72234123 + L2 LINE L2 3136 3247 -25 265 345 58 0 chr11 78549527 78549666 -72233887 - MIR3 SINE MIR -39 169 23 257 307 80 31 chr11 78550845 78551008 -72232545 - L2 LINE L2 -497 2817 2647 249 313 70 9 chr11 78552053 78552168 -72231385 + MIR3 SINE MIR 86 207 -1 202 213 16 66 chr11 78553310 78553371 -72230182 - MIR3 SINE MIR -137 71 14 467 266 32 0 chr11 78553724 78553848 -72229705 - MIR3 SINE MIR -16 192 65 261 284 40 0 chr11 78556256 78556330 -72227223 - MIR SINE MIR -85 177 101 345 322 161 8 chr11 78556946 78557213 -72226340 + L2 LINE L2 2454 2761 -553 494 265 185 32 chr11 78557880 78558069 -72225484 - MIR SINE MIR -25 237 20 400 299 8 8 chr11 78559039 78559156 -72224397 + MIR SINE MIR 36 152 -110 2368 74 3 0 chr11 78559167 78559464 -72224089 + AluY SINE Alu 2 299 -12 184 355 13 13 chr11 78559503 78559579 -72223974 + MIR SINE MIR 160 235 -27 640 268 57 107 chr11 78560224 78560646 -72222907 + L2 LINE L2 2870 3270 -2 185 315 46 19 chr11 78563442 78563512 -72220041 - L2 LINE L2 -556 2758 2682 2018 126 38 0 chr11 78563512 78563805 -72219748 + AluSq SINE Alu 1 304 -9 185 315 46 19 chr11 78563805 78563842 -72219711 - L2 LINE L2 -632 2682 2648 1164 320 103 35 chr11 78563867 78564754 -72218799 - L2 LINE L2 -643 2671 1725 4704 155 24 25 chr11 78564923 78565893 -72217660 - L1MB2 LINE L1 0 6171 5203 341 158 18 0 chr11 78565968 78566025 -72217528 - U7 snRNA snRNA -1 62 5 316 270 328 0 chr11 78566618 78566792 -72216761 + MIR SINE MIR 15 245 -17 294 267 43 43 chr11 78567311 78567427 -72216126 + MIR3 SINE MIR 79 194 -14 416 250 69 14 chr11 78567684 78567828 -72215725 + MER91A DNA MER1_type 21 172 -24 286 276 158 8 chr11 78567869 78567996 -72215557 - MIR SINE MIR -67 195 50 222 37 0 0 chr11 78568715 78568742 -72214811 + (TG)n Simple_repeat Simple_repeat 1 27 0 253 295 0 95 chr11 78569024 78569119 -72214434 + MIR3 SINE MIR 82 167 -41 182 309 29 15 chr11 78569710 78569778 -72213775 - L2 LINE L2 -560 2754 2686 189 307 57 34 chr11 78570781 78570869 -72212684 + MIR3 SINE MIR 85 174 -34 270 331 113 24 chr11 78571293 78571417 -72212136 - L2 LINE L2 -2 3270 3136 197 159 23 0 chr11 78571569 78571613 -72211940 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 281 253 11 32 chr11 78572751 78572846 -72210707 + GA-rich Low_complexity Low_complexity 2 94 0 1087 203 11 0 chr11 78573119 78573306 -72210247 + MER5A DNA MER1_type 1 189 0 206 294 76 0 chr11 78574330 78574422 -72209131 - MIR3 SINE MIR 0 208 110 182 267 89 67 chr11 78574775 78574865 -72208688 - MIR3 SINE MIR -3 205 114 486 197 22 0 chr11 78575041 78575178 -72208375 + (TCCA)n Simple_repeat Simple_repeat 1 140 0 229 182 303 30 chr11 78575192 78575291 -72208262 - MIR3 SINE MIR -1 207 82 393 22 0 0 chr11 78575473 78575519 -72208034 + (TG)n Simple_repeat Simple_repeat 1 46 0 201 250 19 0 chr11 78575928 78575980 -72207573 - L2 LINE L2 -215 3057 3005 446 329 7 7 chr11 78576419 78576559 -72206994 + MIR3 SINE MIR 12 151 -57 664 356 78 48 chr11 78577379 78578031 -72205522 - L3 LINE CR1 -89 1488 817 215 291 0 18 chr11 78578432 78578487 -72205066 - L2 LINE L2 -9 3263 3210 250 368 81 15 chr11 78578529 78578665 -72204888 - MIR SINE MIR -71 191 47 497 300 17 28 chr11 78578736 78578916 -72204637 + MIR3 SINE MIR 31 208 0 191 217 0 22 chr11 78579337 78579383 -72204170 - MIR3 SINE MIR -4 204 160 231 311 0 0 chr11 78579467 78579541 -72204012 + L3b LINE CR1 1342 1415 -168 280 317 12 0 chr11 78579886 78579968 -72203585 - L2 LINE L2 -182 3090 3008 250 256 157 16 chr11 78580090 78580211 -72203342 - MIR3 SINE MIR -68 140 3 283 248 76 86 chr11 78581869 78582079 -72201474 + L2 LINE L2 2886 3093 -179 264 224 47 59 chr11 78582384 78582469 -72201084 - MER5B DNA MER1_type -2 176 93 971 202 54 0 chr11 78583098 78583301 -72200252 + MIR SINE MIR 28 241 -21 365 270 119 8 chr11 78583383 78583509 -72200044 - MIR3 SINE MIR -36 172 33 185 340 153 21 chr11 78583518 78583897 -72199656 + L3 LINE CR1 1147 1575 -2 186 270 40 27 chr11 78584939 78585013 -72198540 + MIR3 SINE MIR 10 84 -124 245 240 0 0 chr11 78585060 78585110 -72198443 + L2 LINE L2 3207 3256 -16 213 223 132 66 chr11 78585123 78585244 -72198309 + MIR3 SINE MIR 58 186 -22 240 296 59 0 chr11 78586648 78586817 -72196736 + (TGGG)n Simple_repeat Simple_repeat 1 179 0 * 343 267 0 44 chr11 78586721 78586901 -72196652 + G-rich Low_complexity Low_complexity 2 173 0 336 271 0 44 chr11 78586984 78587165 -72196388 + G-rich Low_complexity Low_complexity 2 174 0 240 302 6 39 chr11 78587249 78587428 -72196125 + G-rich Low_complexity Low_complexity 2 174 0 224 318 0 34 chr11 78587716 78587895 -72195658 + G-rich Low_complexity Low_complexity 2 174 0 215 298 12 35 chr11 78588039 78588210 -72195343 + G-rich Low_complexity Low_complexity 2 168 0 213 289 50 13 chr11 78588179 78588338 -72195215 + (TGGG)n Simple_repeat Simple_repeat 2 166 0 * 428 249 93 52 chr11 78589394 78589587 -72193966 + L2 LINE L2 2857 3057 -215 198 277 0 0 chr11 78590726 78590773 -72192780 + MIR SINE MIR 80 126 -136 837 247 81 0 chr11 78591201 78591436 -72192117 + MIR SINE MIR 8 261 -1 182 265 88 0 chr11 78591540 78591608 -72191945 - MIR SINE MIR -147 115 42 354 212 136 38 chr11 78592156 78592288 -72191265 + MIR SINE MIR 101 245 -17 249 254 18 35 chr11 78592356 78592470 -72191083 + (TCTCTG)n Simple_repeat Simple_repeat 3 114 0 510 149 234 9 chr11 78592473 78592580 -72190973 + MIR SINE MIR 17 147 -61 315 0 0 0 chr11 78592987 78593022 -72190531 + (TG)n Simple_repeat Simple_repeat 1 35 0 2120 61 8 11 chr11 78593170 78593434 -72190119 + AluY SINE Alu 48 310 -1 347 231 122 41 chr11 78593434 78593581 -72189972 + HAL1 LINE L1 884 1042 -1465 1446 156 0 37 chr11 78593581 78593825 -72189728 + AluJo SINE Alu 78 312 0 323 288 64 16 chr11 78593826 78593951 -72189602 + L1ME2 LINE L1 900 1030 -5089 337 319 53 42 chr11 78593969 78594330 -72189223 + HAL1 LINE L1 1152 1516 -991 2452 285 74 40 chr11 78594396 78594456 -72189097 + L1ME2 LINE L1 2652 2709 -3420 3857 98 0 8 chr11 78594456 78594987 -72188566 + MER1A DNA MER1_type 1 527 0 2452 285 74 40 chr11 78594987 78595614 -72187939 + L1ME2 LINE L1 2709 3313 -2816 2676 44 0 0 chr11 78595614 78595911 -72187642 + AluY SINE Alu 1 297 -14 2452 285 74 40 chr11 78595911 78597055 -72186498 + L1ME2 LINE L1 3313 4546 -1583 1873 187 85 35 chr11 78597059 78597520 -72186033 - LTR2B LTR ERV1 0 490 7 327 326 36 14 chr11 78597524 78597662 -72185891 + L1ME2 LINE L1 4550 4690 -1439 837 121 17 0 chr11 78597702 78597818 -72185735 - AluJb SINE Alu -194 118 1 418 373 80 29 chr11 78597823 78598137 -72185416 + L1ME2 LINE L1 4711 5040 -1089 578 284 85 27 chr11 78598296 78598649 -72184904 + L1ME2 LINE L1 5237 5643 -492 369 341 54 6 chr11 78598707 78598874 -72184679 + L1ME2 LINE L1 5749 5923 -224 238 241 12 18 chr11 78599326 78599496 -72184057 + (TGAA)n Simple_repeat Simple_repeat 3 171 0 209 300 14 0 chr11 78600033 78600103 -72183450 + (GGGTG)n Simple_repeat Simple_repeat 3 73 0 291 221 147 42 chr11 78600301 78600396 -72183157 - MIR SINE MIR -108 154 50 201 146 49 24 chr11 78600651 78600692 -72182861 - MIR SINE MIR -109 153 112 184 262 178 0 chr11 78600714 78600821 -72182732 - MIR3 SINE MIR -21 187 62 1094 76 0 0 chr11 78600975 78601107 -72182446 + AluY SINE Alu 1 132 -179 2455 76 0 0 chr11 78601110 78601412 -72182141 + AluY SINE Alu 1 302 -9 1496 88 0 5 chr11 78601422 78601616 -72181937 + AluY SINE Alu 119 311 0 252 325 48 8 chr11 78601940 78602066 -72181487 + L2 LINE L2 3141 3271 -1 1259 239 32 50 chr11 78602105 78602506 -72181047 - L1MEc LINE L1 -5968 428 35 238 194 0 16 chr11 78602623 78602685 -72180868 - L1ME LINE L1 -367 5803 5743 * 273 236 35 69 chr11 78602657 78602801 -72180752 - L1MEc LINE L1 -4614 1782 1644 30 0 0 0 chr11 78602900 78602930 -72180623 + AT_rich Low_complexity Low_complexity 1 30 0 594 256 20 71 chr11 78602930 78603045 -72180508 - L1MEc LINE L1 -4752 1644 1525 2441 72 3 10 chr11 78603045 78603349 -72180204 - AluY SINE Alu -9 302 1 594 256 20 71 chr11 78603349 78603530 -72180023 - L1MEc LINE L1 -4871 1525 1363 346 329 34 40 chr11 78605155 78605304 -72178249 + L2 LINE L2 3164 3311 -2 381 354 0 0 chr11 78605927 78606054 -72177499 + MIR SINE MIR 1 127 -135 5270 103 6 29 chr11 78606054 78606085 -72177468 + L1PB1 LINE L1 5311 5341 -810 2395 86 3 3 chr11 78606085 78606386 -72177167 - AluSg SINE Alu -9 301 1 5270 103 6 29 chr11 78606386 78607191 -72176362 + L1PB1 LINE L1 5341 6128 -23 1279 204 110 43 chr11 78607488 78607925 -72175628 + MLT1C LTR MaLR 1 466 -1 492 254 32 48 chr11 78608079 78608268 -72175285 + LTR16A1 LTR ERVL 206 391 -66 196 303 22 45 chr11 78608426 78608515 -72175038 - L2 LINE L2 -4 3268 3182 324 244 92 42 chr11 78608773 78608892 -72174661 - MER21A LTR ERV1 -336 595 471 489 319 179 26 chr11 78608895 78609347 -72174206 - L2 LINE L2 -441 2873 2353 228 215 154 31 chr11 78609397 78609462 -72174091 - L2 LINE L2 0 3272 3200 457 262 55 28 chr11 78609533 78609678 -72173875 + MER21B LTR ERV1 333 481 -382 1943 134 24 3 chr11 78609822 78609981 -72173572 - AluSx SINE Alu -15 297 128 207 0 0 0 chr11 78609981 78610004 -72173549 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1943 134 24 3 chr11 78610004 78610135 -72173418 - AluSx SINE Alu -184 128 1 1969 149 3 10 chr11 78610283 78610579 -72172974 - AluJb SINE Alu -16 296 3 2548 71 3 0 chr11 78611425 78611733 -72171820 + AluY SINE Alu 1 309 -2 550 262 40 84 chr11 78611781 78612006 -72171547 + MIR SINE MIR 34 248 -14 550 138 0 0 chr11 78612008 78612095 -72171458 + AluJ/FRAM SINE Alu 216 302 -10 638 257 129 91 chr11 78612194 78612384 -72171169 + MLT1L LTR MaLR 12 193 -422 457 248 9 0 chr11 78612384 78612489 -72171064 - MER81 DNA DNA -4 110 5 638 257 129 91 chr11 78612489 78612532 -72171021 + MLT1L LTR MaLR 193 233 -382 393 81 0 0 chr11 78612532 78612594 -72170959 + (TG)n Simple_repeat Simple_repeat 1 62 0 638 257 129 91 chr11 78612594 78612776 -72170777 + MLT1L LTR MaLR 233 448 -167 2400 94 0 0 chr11 78612776 78613083 -72170470 + AluY SINE Alu 1 307 -4 638 257 129 91 chr11 78613083 78613105 -72170448 + MLT1L LTR MaLR 448 468 -147 423 225 181 0 chr11 78613868 78614006 -72169547 - MER103 DNA DNA -3 163 1 333 181 48 12 chr11 78614151 78614234 -72169319 - MER94 DNA DNA -34 100 15 496 279 0 37 chr11 78614544 78614705 -72168848 + L2 LINE L2 3159 3313 0 338 195 28 45 chr11 78615416 78615575 -72167978 - MLT1J LTR MaLR -305 180 36 1960 112 48 34 chr11 78615930 78616225 -72167328 + AluSg SINE Alu 1 299 -11 251 314 52 44 chr11 78616233 78616462 -72167091 - L2 LINE L2 -191 3081 2851 309 196 82 21 chr11 78616737 78616834 -72166719 - MLT1H LTR MaLR -10 539 437 3309 335 77 17 chr11 78616835 78618705 -72164848 + ERVL LTR ERVL 2299 4279 -1206 266 0 29 0 chr11 78618849 78618883 -72164670 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2249 86 0 4 chr11 78618883 78619162 -72164391 - AluSx SINE Alu -34 278 1 1339 338 45 28 chr11 78619506 78620382 -72163171 + ERVL LTR ERVL 4368 5322 -208 934 262 114 7 chr11 78620386 78620676 -72162877 + L1MC/D LINE L1 5412 5732 -2076 24 0 0 0 chr11 78620946 78620970 -72162583 + AT_rich Low_complexity Low_complexity 1 24 0 266 258 39 110 chr11 78620970 78621125 -72162428 - HAL1 LINE L1 -6 2501 2358 2014 184 51 29 chr11 78621218 78621669 -72161884 - LOR1b LTR ERV1 0 461 1 360 296 68 66 chr11 78621857 78622324 -72161229 + MLT1J LTR MaLR 40 507 -4 319 232 116 21 chr11 78622329 78622424 -72161129 + L1MC5 LINE L1 7810 7913 -48 189 0 0 0 chr11 78622642 78622663 -72160890 + (T)n Simple_repeat Simple_repeat 1 21 0 352 247 0 107 chr11 78623267 78623312 -72160241 + LTR16C LTR ERVL 358 406 -85 520 254 0 0 chr11 78623312 78623422 -72160131 - MER81 DNA DNA -4 110 1 352 247 0 107 chr11 78623422 78623526 -72160027 + LTR16C LTR ERVL 406 491 0 1528 156 21 104 chr11 78623854 78624180 -72159373 + AluJo SINE Alu 1 299 -13 2503 69 0 7 chr11 78625403 78625708 -72157845 - AluY SINE Alu -8 303 1 201 211 0 0 chr11 78626057 78626114 -72157439 + CT-rich Low_complexity Low_complexity 3 59 0 216 227 0 45 chr11 78626938 78627004 -72156549 + G-rich Low_complexity Low_complexity 2 64 0 261 0 0 0 chr11 78627443 78627472 -72156081 + (TG)n Simple_repeat Simple_repeat 2 30 0 475 280 0 38 chr11 78628322 78628454 -72155099 - L2 LINE L2 0 3272 3146 364 250 135 0 chr11 78628482 78628578 -72154975 + FLAM_A SINE Alu 25 133 0 252 0 0 0 chr11 78629308 78629336 -72154217 + (TG)n Simple_repeat Simple_repeat 2 29 0 254 310 9 43 chr11 78630474 78630590 -72152963 + MIR3 SINE MIR 6 117 -91 636 209 14 13 chr11 78631279 78631440 -72152113 + MIR SINE MIR 21 180 -62 337 172 23 69 chr11 78631463 78631550 -72152003 + Tigger5 DNA MER2_type 2241 2323 0 22 0 0 0 chr11 78632173 78632195 -72151358 + GC_rich Low_complexity Low_complexity 1 22 0 206 343 14 0 chr11 78635263 78635333 -72148220 - L2 LINE L2 -7 3265 3195 246 350 0 24 chr11 78635376 78635499 -72148054 - L2 LINE L2 -290 2982 2863 439 204 97 0 chr11 78637281 78637384 -72146169 + L2 LINE L2 3133 3245 -27 30 45 0 0 chr11 78637973 78638017 -72145536 + GC_rich Low_complexity Low_complexity 1 44 0 204 310 35 11 chr11 78641318 78641405 -72142148 - MIR SINE MIR -101 107 19 197 277 0 0 chr11 78642286 78642333 -72141220 + L2 LINE L2 3236 3282 -31 490 323 5 21 chr11 78642611 78642803 -72140750 - MIR3 SINE MIR -4 204 16 204 229 33 0 chr11 78642982 78643043 -72140510 + G-rich Low_complexity Low_complexity 2 64 0 2236 115 3 0 chr11 78644531 78644826 -72138727 - AluSx SINE Alu -16 296 1 351 208 127 0 chr11 78645209 78645337 -72138216 + MIR SINE MIR 37 180 -65 211 259 28 37 chr11 78645768 78645876 -72137677 + MIR3 SINE MIR 14 120 -88 361 291 66 35 chr11 78647855 78648164 -72135389 - L2 LINE L2 -255 3017 2638 259 282 126 10 chr11 78648583 78648686 -72134867 - MIR SINE MIR -62 200 86 231 88 0 0 chr11 78648879 78648913 -72134640 + (TG)n Simple_repeat Simple_repeat 1 34 0 1818 109 103 9 chr11 78649118 78649439 -72134114 - MER46B DNA MER2_type 0 236 11 5285 66 16 27 chr11 78649439 78650179 -72133374 + MER4E LTR ERV1 1 733 -33 2240 98 0 10 chr11 78650179 78650476 -72133077 + AluSx SINE Alu 1 294 -18 5285 66 16 27 chr11 78650476 78650510 -72133043 + MER4E LTR ERV1 733 766 0 1948 220 33 107 chr11 78652106 78652664 -72130889 - LTR8 LTR ERV1 -8 683 189 2403 75 0 0 chr11 78652664 78652969 -72130584 - AluY SINE Alu 0 305 1 1948 220 33 107 chr11 78652969 78653141 -72130412 - LTR8 LTR ERV1 -502 189 6 2450 71 0 10 chr11 78653591 78653885 -72129668 + AluY SINE Alu 1 291 -20 242 0 0 2829 chr11 78653907 78653975 -72129578 - L1P LINE L1 -1107 5039 5765 1536 206 124 24 chr11 78653975 78654020 -72129533 - LTR54B LTR ERV1 -1 497 458 2299 124 0 0 chr11 78654020 78654319 -72129234 + AluSx SINE Alu 1 299 -13 1536 206 124 24 chr11 78654319 78654725 -72128828 - LTR54B LTR ERV1 -40 458 1 242 0 0 2829 chr11 78654725 78654957 -72128596 - L1P LINE L1 -380 5766 4742 208 0 62 0 chr11 78655958 78655990 -72127563 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1947 167 0 10 chr11 78655992 78656298 -72127255 + AluJo SINE Alu 1 303 -9 643 286 61 5 chr11 78657181 78657394 -72126159 - MIR SINE MIR -6 256 32 204 313 0 15 chr11 78657429 78657496 -72126057 - L2 LINE L2 -209 3063 2998 3572 121 43 146 chr11 78658343 78658522 -72125031 + LTR1 LTR ERV1 1 197 -588 2282 121 0 0 chr11 78658522 78658828 -72124725 + AluSg SINE Alu 1 306 -4 3572 121 43 146 chr11 78658828 78659523 -72124030 + LTR1 LTR ERV1 197 785 0 2350 99 0 17 chr11 78660481 78660783 -72122770 + AluSx SINE Alu 1 297 -15 1472 135 154 12 chr11 78660982 78661241 -72122312 - AluSg1 SINE Alu -13 296 1 227 266 46 64 chr11 78661975 78662084 -72121469 + MER41E LTR ERV1 342 448 -64 2261 103 0 3 chr11 78662340 78662631 -72120922 - AluSx SINE Alu -22 290 1 2027 154 3 0 chr11 78663428 78663721 -72119832 - AluJb SINE Alu -18 294 1 253 194 15 30 chr11 78663886 78663953 -72119600 - MER5A DNA MER1_type 0 189 124 414 0 0 0 chr11 78664298 78664344 -72119209 + (TG)n Simple_repeat Simple_repeat 1 46 0 4738 138 14 5 chr11 78664491 78666078 -72117475 - L1PA15 LINE L1 -1 6164 4529 1197 225 0 0 chr11 78666078 78666349 -72117204 - L1 LINE L1 -1750 4396 4126 567 295 33 11 chr11 78666459 78666642 -72116911 + MER110A-int LTR ERV1 4461 4647 0 1638 199 71 36 chr11 78666725 78667173 -72116380 + MER110A LTR ERV1 1 464 -4 1910 148 18 6 chr11 78667315 78667647 -72115906 - MER44D DNA MER2_type 0 609 4 271 329 26 46 chr11 78667651 78667803 -72115750 + L1M4b LINE L1 133 281 -6578 * 497 289 25 80 chr11 78667772 78668080 -72115473 + L1M4b LINE L1 674 1199 -5660 2322 247 42 53 chr11 78668132 78668500 -72115053 + L1M4b LINE L1 1038 1409 -5550 2387 75 0 0 chr11 78668500 78668779 -72114774 + AluY SINE Alu 1 279 -32 225 0 0 0 chr11 78668780 78668805 -72114748 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 2322 247 42 53 chr11 78668805 78669041 -72114512 + L1M4b LINE L1 1409 1646 -5313 2303 86 0 38 chr11 78669041 78669354 -72114199 + AluY SINE Alu 1 301 -10 2322 247 42 53 chr11 78669354 78669871 -72113682 + L1M4b LINE L1 1646 2130 -4829 5559 228 25 24 chr11 78669881 78672144 -72111409 + L1PA13 LINE L1 1 2481 -4316 2356 105 3 0 chr11 78672144 78672450 -72111103 - AluY SINE Alu -4 307 1 5559 228 25 24 chr11 78672450 78672502 -72111051 + L1PA13 LINE L1 2481 2531 -4266 2042 180 70 2 chr11 78672502 78672903 -72110650 + MSTA LTR MaLR 1 428 0 9502 174 7 13 chr11 78672903 78673087 -72110466 + MSTB-int LTR MaLR 1 185 -1466 1831 148 51 18 chr11 78673087 78673419 -72110134 + MER61A LTR ERV1 1 343 0 9502 174 7 13 chr11 78673419 78673592 -72109961 + MSTB-int LTR MaLR 185 358 -1293 1459 104 40 5 chr11 78673592 78673814 -72109739 + MER30 DNA MER1_type 1 230 0 9502 174 7 13 chr11 78673814 78675115 -72108438 + MSTB-int LTR MaLR 358 1650 -1 2103 167 38 35 chr11 78675116 78675391 -72108162 + MSTB LTR MaLR 1 279 -147 2466 92 3 0 chr11 78675391 78675695 -72107858 + AluSc SINE Alu 1 305 -4 2103 167 38 35 chr11 78675695 78675844 -72107709 + MSTB LTR MaLR 279 426 0 11349 190 5 87 chr11 78675846 78677788 -72105765 + L1PA13 LINE L1 2529 4630 -2167 327 49 0 0 chr11 78677788 78677829 -72105724 + (TCTCCC)n Simple_repeat Simple_repeat 1 41 0 5345 74 37 60 chr11 78677834 78678900 -72104653 + SVA Other Other 2 868 -555 11349 190 5 87 chr11 78678900 78678913 -72104640 + L1PA13 LINE L1 4634 4646 -2151 6741 62 7 40 chr11 78678913 78679899 -72103654 + SVA Other Other 433 1386 0 11349 190 5 87 chr11 78679899 78680684 -72102869 + L1PA13 LINE L1 4646 5192 -1605 2087 120 30 0 chr11 78680684 78680984 -72102569 + AluSq SINE Alu 1 309 -4 11349 190 5 87 chr11 78680984 78681176 -72102377 + L1PA13 LINE L1 5192 5398 -1399 5051 152 33 31 chr11 78681173 78681213 -72102340 + L1MC1 LINE L1 1548 1586 -4816 * 2049 116 0 20 chr11 78681213 78681583 -72101970 + AluSx SINE Alu 1 312 0 5051 152 33 31 chr11 78681583 78682643 -72100910 + L1MC1 LINE L1 1586 6373 -29 402 287 32 57 chr11 78682704 78682755 -72100798 + L1MEc LINE L1 1812 1863 -4533 2087 122 0 22 chr11 78682755 78683074 -72100479 + AluSx SINE Alu 1 312 0 402 287 32 57 chr11 78683074 78683179 -72100374 + L1MEc LINE L1 1863 1964 -4432 409 281 17 34 chr11 78683189 78683367 -72100186 + L1MEc LINE L1 1731 1905 -4491 828 267 55 27 chr11 78683571 78683789 -72099764 - HAL1 LINE L1 -1042 1465 1254 2324 98 0 0 chr11 78683789 78684095 -72099458 + AluSx SINE Alu 1 306 -6 828 267 55 27 chr11 78684095 78684314 -72099239 - HAL1 LINE L1 -1253 1254 1016 2525 58 0 0 chr11 78684332 78684641 -72098912 - AluY SINE Alu -2 309 1 641 190 16 0 chr11 78684642 78684763 -72098790 - L1MC1 LINE L1 -9 6324 6202 3426 126 10 29 chr11 78684820 78685153 -72098400 - L1MA4 LINE L1 0 6300 5981 2250 101 0 0 chr11 78685153 78685450 -72098103 - AluSc SINE Alu -12 297 1 3426 126 10 29 chr11 78685450 78685697 -72097856 - L1MA4 LINE L1 -319 5981 5731 2250 54 4 0 chr11 78685754 78686032 -72097521 + AluY SINE Alu 29 307 -4 882 161 0 0 chr11 78686034 78686164 -72097389 + FLAM_A SINE Alu 4 133 0 180 229 167 10 chr11 78686369 78686465 -72097088 - L2 LINE L2 -2413 901 791 360 245 139 60 chr11 78686970 78687186 -72096367 + L1ME4a LINE L1 5621 5853 -268 911 177 0 6 chr11 78687679 78687843 -72095710 - FRAM SINE Alu -20 156 1 426 291 12 24 chr11 78687864 78688029 -72095524 - L1M4 LINE L1 -1445 4701 4539 393 295 177 51 chr11 78688032 78688111 -72095442 - L1M4 LINE L1 -1694 4452 4384 2186 107 0 0 chr11 78688111 78688409 -72095144 - AluSc SINE Alu -11 298 1 393 295 177 51 chr11 78688409 78688583 -72094970 - L1M4 LINE L1 -1762 4384 4167 1880 127 35 0 chr11 78688587 78688870 -72094683 - AluSx SINE Alu -19 293 1 730 263 39 15 chr11 78688878 78689083 -72094470 - AluJb SINE Alu -19 293 84 407 308 50 10 chr11 78689875 78690083 -72093470 - MIR SINE MIR -12 250 33 1879 130 58 36 chr11 78690794 78691124 -72092429 + MER1B DNA MER1_type 1 337 0 2319 101 0 0 chr11 78691982 78692289 -72091264 - AluSx SINE Alu -5 307 1 249 33 0 0 chr11 78693055 78693085 -72090468 + (CTCA)n Simple_repeat Simple_repeat 2 31 0 312 330 9 0 chr11 78693346 78693452 -72090101 - L2 LINE L2 -529 2785 2679 300 315 98 46 chr11 78693465 78693542 -72090011 - L2 LINE L2 -741 2573 2501 2296 86 7 3 chr11 78693542 78693846 -72089707 + AluSq SINE Alu 1 305 -8 300 315 98 46 chr11 78693846 78694073 -72089480 - L2 LINE L2 -813 2501 2253 214 259 62 25 chr11 78695064 78695145 -72088408 - MIR SINE MIR -112 150 67 314 329 7 7 chr11 78695600 78695743 -72087810 + (TG)n Simple_repeat Simple_repeat 1 143 0 2144 86 28 7 chr11 78696588 78696879 -72086674 - AluSc SINE Alu -12 297 1 2128 91 7 3 chr11 78696883 78696896 -72086657 - AluSq SINE Alu -16 297 286 213 39 0 0 chr11 78696896 78696922 -72086631 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 2128 91 7 3 chr11 78696922 78697204 -72086349 - AluSq SINE Alu -27 286 1 520 169 138 22 chr11 78697281 78697420 -72086133 - MIR SINE MIR -71 191 38 286 292 81 15 chr11 78697786 78698079 -72085474 + L1MC4 LINE L1 7316 7735 -307 344 283 94 80 chr11 78698079 78698153 -72085400 + L1ME4a LINE L1 5832 5903 -218 1850 142 45 0 chr11 78698153 78698442 -72085111 + AluSx SINE Alu 1 302 -10 344 283 94 80 chr11 78698442 78698591 -72084962 + L1ME4a LINE L1 5903 6062 -59 2444 83 0 0 chr11 78698591 78698904 -72084649 - AluSq SINE Alu 0 313 1 344 283 94 80 chr11 78698904 78698965 -72084588 + L1ME4a LINE L1 6062 6121 0 308 336 129 0 chr11 78698997 78699113 -72084440 - MIR SINE MIR -22 240 110 187 323 228 24 chr11 78699213 78699507 -72084046 - L2 LINE L2 -14 3258 2905 1539 227 35 34 chr11 78699580 78699739 -72083814 + L1MC4 LINE L1 6814 6971 -1071 654 200 0 0 chr11 78699739 78699849 -72083704 - MER81 DNA DNA -4 110 1 1539 227 35 34 chr11 78699849 78700375 -72083178 + L1MC4 LINE L1 6971 7654 -388 459 332 114 0 chr11 78700490 78700683 -72082870 - MIR SINE MIR -36 226 12 2263 97 7 0 chr11 78701664 78701972 -72081581 + AluSp SINE Alu 1 310 -3 546 277 168 5 chr11 78702175 78702367 -72081186 + MIR SINE MIR 25 253 -9 1981 118 7 33 chr11 78702367 78702673 -72080880 + AluSx SINE Alu 1 298 -14 879 71 0 0 chr11 78702682 78702794 -72080759 + HY1 scRNA scRNA 1 112 0 260 301 194 30 chr11 78702933 78703232 -72080321 - L2 LINE L2 -1 3271 2924 344 268 124 21 chr11 78704021 78704192 -72079361 - MIR SINE MIR -55 207 16 343 298 95 13 chr11 78704441 78704599 -72078954 + MIR SINE MIR 55 225 -37 270 302 10 31 chr11 78705469 78705565 -72077988 + L2 LINE L2 3179 3272 0 424 317 21 103 chr11 78705844 78706087 -72077466 + L1ME LINE L1 5385 5607 -514 1285 109 6 0 chr11 78706144 78706318 -72077235 - AluJo SINE Alu -133 179 5 2065 123 3 0 chr11 78706904 78707196 -72076357 - AluSx SINE Alu -19 293 1 188 314 98 52 chr11 78707395 78707589 -72075964 - L2 LINE L2 -213 3059 2857 225 246 115 33 chr11 78707678 78707800 -72075753 - MIR SINE MIR -29 233 102 189 132 0 0 chr11 78709323 78709361 -72074192 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 212 323 187 13 chr11 78709617 78709772 -72073781 + L2 LINE L2 3090 3271 -1 423 289 53 29 chr11 78710430 78710638 -72072915 + L2 LINE L2 3101 3313 0 556 321 137 15 chr11 78712074 78712482 -72071071 + L2 LINE L2 2815 3272 0 227 167 93 0 chr11 78712509 78712563 -72070990 - MIR SINE MIR -72 136 78 241 189 75 0 chr11 78713073 78713126 -72070427 - MIR SINE MIR -74 134 78 332 259 33 23 chr11 78713229 78713364 -72070189 + MIR3 SINE MIR 15 149 -72 286 231 26 13 chr11 78714707 78714785 -72068768 + MIR SINE MIR 67 145 -63 449 247 88 41 chr11 78714876 78715046 -72068507 + MIR SINE MIR 14 191 -71 422 268 20 65 chr11 78715365 78715518 -72068035 + MIR3 SINE MIR 45 190 -18 1592 138 36 8 chr11 78716027 78716280 -72067273 + AluSx SINE Alu 40 299 -13 188 270 32 0 chr11 78717440 78717503 -72066050 + MIR3 SINE MIR 94 158 -50 24 32 0 0 chr11 78718279 78718310 -72065243 + GC_rich Low_complexity Low_complexity 1 31 0 39 106 0 0 chr11 78718346 78718497 -72065056 + GC_rich Low_complexity Low_complexity 1 151 0 222 118 0 0 chr11 78719240 78719274 -72064279 + (CA)n Simple_repeat Simple_repeat 2 35 0 255 250 0 14 chr11 78719422 78719494 -72064059 + MIR SINE MIR 48 118 -90 280 340 30 0 chr11 78719652 78719752 -72063801 + MIR3 SINE MIR 104 206 -2 201 253 66 55 chr11 78720116 78720207 -72063346 + MIR SINE MIR 33 124 -84 470 254 106 7 chr11 78720992 78721134 -72062419 + MIR SINE MIR 48 203 -59 2280 86 13 0 chr11 78721962 78722266 -72061287 + AluSx SINE Alu 1 308 -4 1793 175 0 0 chr11 78722748 78723056 -72060497 + AluJb SINE Alu 1 308 -4 1795 151 0 49 chr11 78723464 78723789 -72059764 + AluJo SINE Alu 1 309 -3 327 233 105 12 chr11 78723789 78723875 -72059678 - MIR SINE MIR -131 131 38 270 125 54 0 chr11 78725194 78725250 -72058303 + MER53 DNA DNA 94 152 -37 2095 101 21 0 chr11 78725253 78725539 -72058014 - AluSg SINE Alu -18 292 1 1672 166 35 3 chr11 78725541 78725825 -72057728 - AluJo SINE Alu -19 293 1 435 268 65 0 chr11 78725825 78725948 -72057605 + MIR SINE MIR 120 250 -12 384 324 41 0 chr11 78726949 78727094 -72056459 + MIR3 SINE MIR 9 159 -49 404 238 28 171 chr11 78727672 78727924 -72055629 - MIR SINE MIR 0 262 47 2202 95 10 3 chr11 78728101 78728397 -72055156 + AluSq SINE Alu 1 298 -15 1116 103 0 6 chr11 78728532 78728720 -72054833 - AluSp SINE Alu 0 313 134 2114 103 3 19 chr11 78728720 78729031 -72054522 - AluSx SINE Alu -6 306 1 282 309 64 9 chr11 78729803 78729913 -72053640 + MIR SINE MIR 38 153 -55 288 289 104 17 chr11 78729940 78730162 -72053391 - MIR3 SINE MIR 0 262 15 3318 164 19 53 chr11 78731049 78731086 -72052467 + LTR51 LTR ERV1 1 38 -633 533 168 267 0 chr11 78731086 78731217 -72052336 - AluJ SINE Alu 0 302 137 3318 164 19 53 chr11 78731217 78731758 -72051795 + LTR51 LTR ERV1 38 554 -117 2413 62 0 3 chr11 78731758 78732062 -72051491 + AluY SINE Alu 1 303 -8 3318 164 19 53 chr11 78732062 78732177 -72051376 + LTR51 LTR ERV1 554 671 0 1169 91 5 16 chr11 78732323 78732509 -72051044 - AluY SINE Alu -1 310 127 183 42 0 0 chr11 78732645 78732669 -72050884 + (A)n Simple_repeat Simple_repeat 1 24 0 930 120 8 0 chr11 78732751 78732884 -72050669 - AluJb SINE Alu -178 134 1 1242 213 40 7 chr11 78733236 78733356 -72050197 + AluJb SINE Alu 1 116 -206 194 0 39 0 chr11 78733356 78733382 -72050171 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1242 213 40 7 chr11 78733382 78733574 -72049979 + AluJb SINE Alu 116 322 0 867 205 0 0 chr11 78733575 78733741 -72049812 + AluJb SINE Alu 136 301 -11 2307 76 0 16 chr11 78733741 78734056 -72049497 + AluSg SINE Alu 1 310 0 490 299 56 39 chr11 78734130 78734374 -72049179 - L1MC/D LINE L1 -483 5638 5492 1999 153 45 6 chr11 78734374 78734707 -72048846 - MER7A DNA MER2_type -1 345 2 490 299 56 39 chr11 78734707 78734905 -72048648 - L1MC/D LINE L1 -629 5492 5299 2266 89 3 10 chr11 78734944 78735257 -72048296 - AluSx SINE Alu -1 311 1 2223 119 0 0 chr11 78735265 78735577 -72047976 - AluSx SINE Alu 0 312 1 1727 159 38 45 chr11 78735621 78735674 -72047879 - L1MB4 LINE L1 -7 6164 6112 1739 182 0 3 chr11 78735674 78735971 -72047582 - AluJb SINE Alu -16 296 1 1727 159 38 45 chr11 78735971 78736118 -72047435 - L1MB4 LINE L1 -59 6112 5965 2336 83 0 13 chr11 78736118 78736431 -72047122 - AluSg SINE Alu -1 309 1 1905 157 3 0 chr11 78736431 78736743 -72046810 - AluSq SINE Alu 0 313 1 1727 159 38 45 chr11 78736743 78736985 -72046568 - L1MB4 LINE L1 -204 5967 5688 2382 107 30 37 chr11 78736997 78737205 -72046348 - MSTB1 LTR MaLR -32 400 195 2115 92 0 54 chr11 78737205 78737521 -72046032 - AluSx SINE Alu -13 299 1 2382 107 30 37 chr11 78737521 78737715 -72045838 - MSTB1 LTR MaLR -237 195 1 1757 172 14 25 chr11 78737718 78738072 -72045481 - L1MB4 LINE L1 -491 5689 5340 2001 125 0 3 chr11 78738072 78738368 -72045185 - AluSx SINE Alu -17 295 1 897 202 48 0 chr11 78738396 78738564 -72044989 + FRAM SINE Alu 1 173 -3 1878 148 3 0 chr11 78738606 78738896 -72044657 - AluJb SINE Alu -18 294 4 271 194 223 0 chr11 78739028 78739131 -72044422 + MLT1J2 LTR MaLR 32 157 -293 341 121 0 0 chr11 78739276 78739334 -72044219 + MLT1I LTR MaLR 310 367 -42 972 231 116 72 chr11 78739349 78739374 -72044179 + MLT1H1 LTR MaLR 1 23 -532 2257 97 6 13 chr11 78739374 78739685 -72043868 - AluSx SINE Alu -3 309 1 972 231 116 72 chr11 78739685 78740092 -72043461 + MLT1H1 LTR MaLR 23 452 -103 2050 104 3 35 chr11 78740126 78740442 -72043111 + AluSx SINE Alu 2 307 -5 2034 119 3 0 chr11 78740574 78740867 -72042686 - AluSx SINE Alu -18 294 1 634 304 118 34 chr11 78740958 78741501 -72042052 - L2 LINE L2 -18 3295 2711 2110 104 7 3 chr11 78741501 78741799 -72041754 - AluSx SINE Alu -13 299 1 634 304 118 34 chr11 78741799 78741834 -72041719 - L2 LINE L2 -602 2711 2680 2184 97 7 7 chr11 78741857 78742165 -72041388 - AluSg SINE Alu -2 308 1 1755 167 3 22 chr11 78742205 78742347 -72041206 + AluJo SINE Alu 1 144 -168 1940 117 14 4 chr11 78742347 78742659 -72040894 + AluSx SINE Alu 1 315 0 1755 167 3 22 chr11 78742659 78742826 -72040727 + AluJo SINE Alu 144 305 -7 261 98 0 0 chr11 78742965 78743006 -72040547 + (A)n Simple_repeat Simple_repeat 1 41 0 2225 52 0 24 chr11 78743024 78743340 -72040213 - AluY SINE Alu 0 309 1 275 194 242 16 chr11 78743370 78743449 -72040104 - MIR SINE MIR -10 252 192 1897 154 17 56 chr11 78743449 78743806 -72039747 - MER2 DNA MER2_type -1 343 1 275 194 242 16 chr11 78743806 78743850 -72039703 - MIR SINE MIR -70 192 101 21 36 0 0 chr11 78744432 78744460 -72039093 + AT_rich Low_complexity Low_complexity 1 28 0 213 204 0 61 chr11 78744867 78744916 -72038637 + MIR SINE MIR 53 98 -164 2109 106 6 10 chr11 78744926 78745237 -72038316 - AluSg SINE Alu 0 310 1 1472 187 10 26 chr11 78745280 78745421 -72038132 + AluJo SINE Alu 1 143 -169 1919 113 14 7 chr11 78745421 78745734 -72037819 + AluSx SINE Alu 1 315 0 1472 187 10 26 chr11 78745734 78745901 -72037652 + AluJo SINE Alu 143 305 -7 281 304 93 12 chr11 78747364 78747525 -72036028 + L2 LINE L2 2871 3044 -228 199 288 106 0 chr11 78749198 78749287 -72034266 + MIR SINE MIR 77 145 -63 2068 74 0 11 chr11 78749585 78749891 -72033662 - AluY SINE Alu 0 303 1 205 261 14 43 chr11 78749896 78749965 -72033588 - MIR SINE MIR -64 144 78 216 86 0 0 chr11 78750557 78750592 -72032961 + (TGG)n Simple_repeat Simple_repeat 2 36 0 1999 85 53 3 chr11 78750848 78751130 -72032423 - AluSc SINE Alu -13 296 1 208 343 47 52 chr11 78751867 78752080 -72031473 + L2 LINE L2 1966 2177 -1137 222 315 222 0 chr11 78752337 78752445 -72031108 - L2 LINE L2 -1 3312 3181 2414 75 0 0 chr11 78753348 78753656 -72029897 - AluY SINE Alu -3 308 1 645 200 55 0 chr11 78753719 78753864 -72029689 - L1MD3 LINE L1 -7 7988 7836 671 232 104 27 chr11 78753868 78754088 -72029465 - L1MD2 LINE L1 -215 6144 5908 383 246 127 8 chr11 78754751 78754877 -72028676 + MIR SINE MIR 78 218 -44 1611 144 65 4 chr11 78755987 78756264 -72027289 - AluJb SINE Alu -18 294 1 235 330 66 0 chr11 78758140 78758231 -72025322 - MIR SINE MIR -72 136 40 182 138 0 0 chr11 78760796 78760825 -72022728 + MIR SINE MIR 33 61 -147 2042 95 29 13 chr11 78761398 78761704 -72021849 + AluSx SINE Alu 1 311 -1 190 225 232 36 chr11 78762865 78763003 -72020550 - MIR SINE MIR -50 212 48 200 194 0 0 chr11 78763199 78763235 -72020318 + (TTGGGG)n Simple_repeat Simple_repeat 5 40 0 474 245 11 0 chr11 78764281 78764375 -72019178 - FRAM SINE Alu -81 95 1 805 151 0 0 chr11 78764551 78764670 -72018883 - FLAM_A SINE Alu -14 119 1 186 234 21 0 chr11 78764908 78764955 -72018598 + L2 LINE L2 3225 3272 0 1982 129 7 0 chr11 78764966 78765260 -72018293 + AluSq SINE Alu 1 296 -17 292 299 119 0 chr11 78765455 78765589 -72017964 - MIR SINE MIR -5 257 108 244 221 195 0 chr11 78766438 78766515 -72017038 - MIR SINE MIR -81 127 36 226 271 85 25 chr11 78766544 78766662 -72016891 + MIR SINE MIR 17 141 -67 316 324 103 22 chr11 78767079 78767269 -72016284 - MIR3 SINE MIR -34 174 15 2198 88 3 7 chr11 78767380 78767674 -72015879 + AluSx SINE Alu 1 293 -19 2190 106 0 7 chr11 78768323 78768626 -72014927 - AluSx SINE Alu -11 301 1 246 187 22 44 chr11 78769108 78769199 -72014354 + (AGGTG)n Simple_repeat Simple_repeat 4 92 0 264 221 274 0 chr11 78769253 78769348 -72014205 - MIR SINE MIR -113 149 29 459 286 29 7 chr11 78769348 78769488 -72014065 + L1MC/D LINE L1 5526 5668 -2140 2249 97 3 0 chr11 78769489 78769789 -72013764 - AluSp SINE Alu -12 301 1 893 343 102 46 chr11 78772957 78773745 -72009808 - L2 LINE L2 -454 2860 2029 440 349 38 0 chr11 78773753 78773988 -72009565 + L2 LINE L2 2544 2787 -527 223 111 0 0 chr11 78773988 78774024 -72009529 + L2 LINE L2 3277 3312 -1 1458 144 12 121 chr11 78774767 78775107 -72008446 + AluJb SINE Alu 6 308 -4 1248 138 52 5 chr11 78777532 78777567 -72005986 + AluJo SINE Alu 87 119 -193 285 29 0 0 chr11 78777567 78777601 -72005952 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 1248 138 52 5 chr11 78777601 78777775 -72005778 + AluJo SINE Alu 119 306 -6 1969 125 0 52 chr11 78778882 78779211 -72004342 + AluSx SINE Alu 1 312 0 613 171 21 50 chr11 78779603 78779743 -72003810 + L2 LINE L2 3175 3310 -3 186 250 0 0 chr11 78779739 78779787 -72003766 + MIR SINE MIR 139 186 -76 * 405 58 0 0 chr11 78779790 78779842 -72003711 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 2232 95 0 3 chr11 78779916 78780222 -72003331 - AluSg SINE Alu -5 305 1 286 102 82 0 chr11 78780495 78780544 -72003009 - L1ME4a LINE L1 -2 6119 6067 401 273 80 62 chr11 78780546 78780722 -72002831 - L1ME4a LINE L1 -196 5925 5747 1708 174 0 16 chr11 78780735 78781040 -72002513 - AluJb SINE Alu -12 300 1 468 239 85 40 chr11 78781125 78781301 -72002252 - L2 LINE L2 -4 3309 3126 309 197 123 49 chr11 78781303 78781425 -72002128 - L1ME4a LINE L1 -401 5720 5590 2165 110 3 0 chr11 78781433 78781734 -72001819 - AluSx SINE Alu -10 302 1 289 354 125 15 chr11 78781926 78782392 -72001161 + L2 LINE L2 2751 3270 -2 802 269 84 42 chr11 78782968 78783347 -72000206 - L2 LINE L2 0 3313 2919 2150 108 3 7 chr11 78783800 78784106 -71999447 - AluSq SINE Alu -8 305 1 2035 69 87 0 chr11 78784117 78784394 -71999159 - AluY SINE Alu -10 301 1 1676 131 3 55 chr11 78784547 78784859 -71998694 + AluSx SINE Alu 1 296 -16 188 138 0 0 chr11 78785465 78785494 -71998059 + MIR SINE MIR 33 61 -147 1589 132 7 30 chr11 78786067 78786370 -71997183 + AluSq SINE Alu 1 296 -17 2244 76 0 3 chr11 78786507 78786828 -71996725 - AluSq SINE Alu 0 313 1 321 336 129 0 chr11 78786921 78787037 -71996516 - MIR SINE MIR -22 240 110 1579 217 37 35 chr11 78787504 78787663 -71995890 + L1MC4 LINE L1 6814 6971 -1071 633 200 0 0 chr11 78787663 78787773 -71995780 - MER81 DNA DNA -4 110 1 1579 217 37 35 chr11 78787773 78788299 -71995254 + L1MC4 LINE L1 6971 7654 -388 467 316 119 5 chr11 78788414 78788607 -71994946 - MIR SINE MIR -36 226 12 2228 101 7 0 chr11 78789588 78789896 -71993657 + AluSp SINE Alu 1 310 -3 586 256 183 5 chr11 78790099 78790290 -71993263 + MIR SINE MIR 25 249 -13 1961 115 7 33 chr11 78790291 78790595 -71992958 + AluSx SINE Alu 1 296 -16 871 71 0 0 chr11 78790606 78790718 -71992835 + HY1 scRNA scRNA 1 112 0 256 310 192 17 chr11 78790860 78791157 -71992396 - L2 LINE L2 0 3272 2924 354 262 129 21 chr11 78791947 78792118 -71991435 - MIR SINE MIR -55 207 16 317 259 127 44 chr11 78792367 78792525 -71991028 + MIR SINE MIR 55 225 -37 260 302 10 31 chr11 78793395 78793491 -71990062 + L2 LINE L2 3179 3272 0 394 313 21 103 chr11 78793770 78794013 -71989540 + L1ME LINE L1 5385 5607 -514 1276 109 6 0 chr11 78794070 78794244 -71989309 - AluJo SINE Alu -133 179 5 2041 121 3 0 chr11 78794833 78795122 -71988431 - AluSx SINE Alu -22 290 1 241 238 115 33 chr11 78795604 78795726 -71987827 - MIR SINE MIR -29 233 102 189 132 0 0 chr11 78797248 78797286 -71986267 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 218 316 126 72 chr11 78797434 78797697 -71985856 + L2 LINE L2 2995 3271 -1 449 279 58 34 chr11 78798355 78798563 -71984990 + L2 LINE L2 3101 3313 0 546 319 140 17 chr11 78799999 78800407 -71983146 + L2 LINE L2 2815 3272 0 234 167 93 0 chr11 78800434 78800488 -71983065 - MIR SINE MIR -72 136 78 262 189 75 0 chr11 78800998 78801051 -71982502 - MIR SINE MIR -74 134 78 338 254 34 24 chr11 78801154 78801289 -71982264 + MIR3 SINE MIR 13 149 -72 252 227 200 13 chr11 78801955 78802030 -71981523 - MIR SINE MIR -71 137 49 284 218 23 46 chr11 78802623 78802710 -71980843 + MIR SINE MIR 61 145 -63 451 239 82 30 chr11 78802801 78802935 -71980618 + MIR SINE MIR 14 154 -108 422 261 20 65 chr11 78803290 78803443 -71980110 + MIR3 SINE MIR 45 190 -18 1570 138 36 8 chr11 78803952 78804205 -71979348 + AluSx SINE Alu 40 299 -13 732 176 0 0 chr11 78805603 78805728 -71977825 - AluSp SINE Alu -57 256 132 1234 263 54 22 chr11 78805744 78806338 -71977215 - L1MEc LINE L1 -5124 1272 660 1964 100 0 14 chr11 78806432 78806743 -71976810 - AluSx SINE Alu 0 315 9 855 265 78 19 chr11 78806877 78807251 -71976302 - L1MC4 LINE L1 -922 6886 6563 950 227 0 0 chr11 78807271 78807443 -71976110 - FAM SINE Alu -3 172 1 1534 178 51 0 chr11 78807575 78807851 -71975702 - AluJb SINE Alu -22 290 1 23 33 0 0 chr11 78808068 78808098 -71975455 + AT_rich Low_complexity Low_complexity 1 30 0 1104 118 0 75 chr11 78808388 78808600 -71974953 + AluJb SINE Alu 100 295 -17 1726 239 52 8 chr11 78808600 78809118 -71974435 + L1MB8 LINE L1 2325 2865 -3281 1428 174 29 35 chr11 78809227 78809538 -71974015 - AluJo SINE Alu -3 309 1 403 272 115 45 chr11 78809588 78809831 -71973722 - MLT1H LTR MaLR -193 356 97 1123 199 138 31 chr11 78809938 78810199 -71973354 + AluJo SINE Alu 1 289 -13 1746 162 7 10 chr11 78811085 78811382 -71972171 + AluJo SINE Alu 1 296 -16 3793 187 42 23 chr11 78811391 78811443 -71972110 + L1MB8 LINE L1 4910 4960 -1218 2153 165 16 5 chr11 78811443 78811812 -71971741 - MER93b LTR ERV1 0 373 1 3793 187 42 23 chr11 78811812 78812231 -71971322 + L1MB8 LINE L1 4960 5369 -809 2166 101 0 3 chr11 78812231 78812527 -71971026 - AluSg SINE Alu -15 295 1 3793 187 42 23 chr11 78812527 78813267 -71970286 + L1MB8 LINE L1 5369 6144 -34 255 61 0 0 chr11 78813270 78813303 -71970250 + (A)n Simple_repeat Simple_repeat 1 33 0 292 203 54 0 chr11 78813463 78813537 -71970016 + L1MB2 LINE L1 6087 6164 -7 21 0 0 0 chr11 78813565 78813586 -71969967 + AT_rich Low_complexity Low_complexity 1 21 0 731 185 0 8 chr11 78813687 78813817 -71969736 + FLAM_C SINE Alu 5 133 0 757 155 0 31 chr11 78813844 78813973 -71969580 - FAM SINE Alu -56 129 5 2475 59 0 0 chr11 78814650 78814955 -71968598 - AluY SINE Alu -6 305 1 28 0 0 0 chr11 78815014 78815042 -71968511 + AT_rich Low_complexity Low_complexity 1 28 0 271 334 148 40 chr11 78815379 78815781 -71967772 - L2 LINE L2 -212 3060 2618 820 103 0 0 chr11 78815923 78816030 -71967523 + U6 snRNA snRNA 1 107 0 213 159 0 0 chr11 78816093 78816137 -71967416 + CT-rich Low_complexity Low_complexity 1 44 0 1809 119 7 13 chr11 78816380 78816682 -71966871 + AluSx SINE Alu 11 310 -2 5009 109 17 35 chr11 78816709 78816790 -71966763 + L1PA13 LINE L1 5381 5462 -701 1768 151 0 45 chr11 78816790 78817102 -71966451 - AluJb SINE Alu -14 298 1 5009 109 17 35 chr11 78817102 78817329 -71966224 + L1PA13 LINE L1 5462 5692 -471 1365 151 143 0 chr11 78817329 78817587 -71965966 + AluSp SINE Alu 1 295 -18 5009 109 17 35 chr11 78817587 78818055 -71965498 + L1PA13 LINE L1 5692 6144 -19 2867 179 32 17 chr11 78818077 78818338 -71965215 + L1MB3 LINE L1 4810 5066 -1117 1707 103 4 4 chr11 78818338 78818580 -71964973 - AluSx SINE Alu -22 290 49 2867 179 32 17 chr11 78818580 78819281 -71964272 + L1MB3 LINE L1 5066 5788 -395 243 27 0 54 chr11 78819294 78819331 -71964222 + L1MB3 LINE L1 5773 5807 -361 973 159 0 0 chr11 78819363 78819514 -71964039 - FRAM SINE Alu -30 146 1 1785 116 83 69 chr11 78819514 78819769 -71963784 + L1MB3 LINE L1 5807 6070 -113 2256 81 0 14 chr11 78819769 78819905 -71963648 + AluSx SINE Alu 1 137 -175 2156 90 3 13 chr11 78819905 78820240 -71963313 + AluSp SINE Alu 1 313 0 2256 81 0 14 chr11 78820240 78820399 -71963154 + AluSx SINE Alu 137 292 -20 1785 116 83 69 chr11 78820399 78820505 -71963048 + L1MB3 LINE L1 6070 6173 -10 445 130 0 0 chr11 78821353 78821430 -71962123 + L1MA5 LINE L1 6224 6300 0 21 0 0 0 chr11 78821465 78821486 -71962067 + AT_rich Low_complexity Low_complexity 1 21 0 2148 89 0 38 chr11 78822349 78822664 -71960889 - AluSq SINE Alu -10 303 1 720 319 55 4 chr11 78822785 78823020 -71960533 + MIR SINE MIR 16 262 0 3895 70 8 0 chr11 78823186 78823698 -71959855 + L1PA13 LINE L1 5647 6162 -1 2081 251 40 15 chr11 78823723 78824030 -71959523 + L1ME4a LINE L1 36 365 -6031 3155 165 15 4 chr11 78824030 78824569 -71958984 + MER44D DNA MER2_type 2 601 -4 2081 251 40 15 chr11 78824569 78824807 -71958746 + L1ME4a LINE L1 365 595 -5801 2075 132 0 35 chr11 78824828 78825146 -71958407 - MER1B DNA MER1_type 0 339 33 9099 208 80 21 chr11 78825163 78825477 -71958076 + L1ME4a LINE L1 2672 2966 -3269 1450 160 101 0 chr11 78825477 78825745 -71957808 + AluSx SINE Alu 1 295 -17 9099 208 80 21 chr11 78825745 78826562 -71956991 + L1ME4a LINE L1 2966 3733 -2502 2180 106 0 3 chr11 78826562 78826864 -71956689 + AluSp SINE Alu 1 301 -12 9099 208 80 21 chr11 78826864 78827846 -71955707 + L1ME4a LINE L1 3733 4656 -1579 1288 194 27 31 chr11 78827846 78828139 -71955414 - AluJo SINE Alu -20 292 1 9099 208 80 21 chr11 78828139 78828879 -71954674 + L1ME4a LINE L1 4656 5693 -542 1688 143 65 4 chr11 78829191 78829470 -71954083 + AluJb SINE Alu 1 296 -16 313 74 56 0 chr11 78829473 78829527 -71954026 + L1MA8 LINE L1 6235 6291 0 303 229 160 15 chr11 78829528 78829659 -71953894 + L1ME4a LINE L1 6035 6184 -6 213 388 92 0 chr11 78830782 78830880 -71952673 + L2 LINE L2 3092 3198 -74 2202 116 0 0 chr11 78831169 78831482 -71952071 - AluSq SINE Alu 0 313 1 385 241 184 29 chr11 78831878 78832085 -71951468 - L2 LINE L2 0 3313 3075 195 352 22 22 chr11 78832121 78832212 -71951341 + MIR3 SINE MIR 72 162 -46 209 293 17 17 chr11 78832217 78832275 -71951278 + MIR3 SINE MIR 15 72 -136 3042 82 17 46 chr11 78832977 78833454 -71950099 + L1PA11 LINE L1 5709 6171 -3 867 192 0 0 chr11 78833454 78833600 -71949953 + AluSg/x SINE Alu 134 279 -33 294 50 0 0 chr11 78833603 78833643 -71949910 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2376 100 0 10 chr11 78833810 78834119 -71949434 - AluSx SINE Alu -6 306 1 203 303 0 15 chr11 78834286 78834352 -71949201 + GA-rich Low_complexity Low_complexity 6 70 0 195 114 0 0 chr11 78834355 78834390 -71949163 + (GA)n Simple_repeat Simple_repeat 2 36 0 809 103 0 0 chr11 78834456 78834563 -71948990 - U6 snRNA snRNA 0 107 1 261 340 140 35 chr11 78834705 78835119 -71948434 + L2 LINE L2 2618 3072 -200 28 0 0 0 chr11 78835444 78835472 -71948081 + AT_rich Low_complexity Low_complexity 1 28 0 2584 59 0 0 chr11 78835531 78835837 -71947716 + AluY SINE Alu 1 306 -5 753 155 0 31 chr11 78836514 78836643 -71946910 + FAM SINE Alu 5 129 -56 734 196 0 8 chr11 78836670 78836803 -71946750 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chr11 78836901 78836922 -71946631 + AT_rich Low_complexity Low_complexity 1 21 0 264 169 62 0 chr11 78836950 78837015 -71946538 - L1MB2 LINE L1 -7 6164 6096 255 61 0 0 chr11 78837184 78837217 -71946336 + (T)n Simple_repeat Simple_repeat 1 33 0 3515 186 42 23 chr11 78837220 78837960 -71945593 - L1MB8 LINE L1 -34 6144 5420 2240 105 0 3 chr11 78837960 78838256 -71945297 + AluSg SINE Alu 1 295 -15 3515 186 42 23 chr11 78838256 78838675 -71944878 - L1MB8 LINE L1 -758 5420 4960 2116 165 16 5 chr11 78838675 78839044 -71944509 + MER93b LTR ERV1 1 373 0 3515 186 42 23 chr11 78839044 78839096 -71944457 - L1MB8 LINE L1 -1218 4960 4910 1863 155 7 17 chr11 78839105 78839402 -71944151 - AluJo SINE Alu -18 294 1 972 216 134 31 chr11 78840295 78840549 -71943004 - AluJo SINE Alu -32 280 1 320 264 119 47 chr11 78840656 78840891 -71942662 + MLT1H LTR MaLR 97 348 -201 1547 174 29 35 chr11 78840950 78841261 -71942292 + AluJo SINE Alu 1 309 -3 1590 239 52 8 chr11 78841370 78841888 -71941665 - L1MB8 LINE L1 -3281 2865 2325 1193 113 0 75 chr11 78841888 78842100 -71941453 - AluJb SINE Alu -17 295 100 23 33 0 0 chr11 78842390 78842420 -71941133 + AT_rich Low_complexity Low_complexity 1 30 0 1646 178 51 0 chr11 78842637 78842913 -71940640 + AluJb SINE Alu 1 290 -22 953 227 0 0 chr11 78843045 78843217 -71940336 + FAM SINE Alu 1 172 -3 793 262 29 37 chr11 78843237 78843611 -71939942 + L1MC4a LINE L1 6563 6884 -924 2066 100 0 14 chr11 78843745 78844056 -71939497 + AluSx SINE Alu 9 315 0 1090 263 54 22 chr11 78844150 78844744 -71938809 + L1MEc LINE L1 660 1272 -5124 1160 136 0 0 chr11 78844765 78844934 -71938619 + AluSp SINE Alu 137 305 -8 193 89 44 0 chr11 78844981 78845026 -71938527 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2290 129 214 2 chr11 78845036 78845546 -71938007 + L1MA4 LINE L1 4413 5030 -1116 760 121 4 6 chr11 78845546 78845817 -71937736 + AluJ SINE Alu 1 319 0 4320 130 23 16 chr11 78845820 78846766 -71936787 + L1MA4 LINE L1 5016 5968 -335 2284 65 7 14 chr11 78846772 78847064 -71936489 + AluY SINE Alu 1 290 -21 407 97 0 9 chr11 78847073 78847280 -71936273 + AluSg SINE Alu 1 291 -20 1546 151 79 3 chr11 78847280 78847597 -71935956 + L1MA4 LINE L1 5955 6295 -5 2177 210 106 44 chr11 78847625 78848562 -71934991 + L1ME LINE L1 4494 5485 -681 1785 123 3 35 chr11 78848562 78848872 -71934681 + AluJb SINE Alu 1 300 -12 438 289 75 5 chr11 78848944 78849131 -71934422 + L1MC4 LINE L1 7296 7495 -547 300 134 25 51 chr11 78849397 78849554 -71933999 + (TA)n Simple_repeat Simple_repeat 2 154 0 1371 201 49 8 chr11 78849554 78849817 -71933736 - AluJb SINE Alu -38 274 1 681 323 49 41 chr11 78850993 78851337 -71932216 - L3 LINE CR1 -10 1567 1221 240 209 0 0 chr11 78851999 78852085 -71931468 + (TA)n Simple_repeat Simple_repeat 2 87 0 181 216 0 59 chr11 78852225 78852276 -71931277 + L2 LINE L2 3224 3271 -1 21 36 0 0 chr11 78852602 78852630 -71930923 + AT_rich Low_complexity Low_complexity 1 28 0 283 214 33 14 chr11 78852705 78852865 -71930688 + MLT1G LTR MaLR 375 590 0 823 352 61 17 chr11 78852866 78853440 -71930113 - L2 LINE L2 -974 2340 1742 1779 173 3 10 chr11 78853530 78853843 -71929710 - AluJb SINE Alu -1 311 1 2441 56 7 23 chr11 78853877 78854182 -71929371 - AluY SINE Alu -11 300 1 1378 177 0 17 chr11 78854411 78854648 -71928905 + AluJo SINE Alu 63 295 -17 353 307 66 15 chr11 78855369 78855506 -71928047 + MIR3 SINE MIR 64 207 -1 394 318 154 0 chr11 78855559 78855754 -71927799 - MIR SINE MIR -32 230 6 23 0 0 0 chr11 78855814 78855837 -71927716 + AT_rich Low_complexity Low_complexity 1 23 0 1209 191 4 60 chr11 78855901 78856152 -71927401 - AluJb SINE Alu -75 237 1 21 0 0 0 chr11 78856217 78856238 -71927315 + AT_rich Low_complexity Low_complexity 1 21 0 354 227 93 70 chr11 78856593 78856765 -71926788 + MIR SINE MIR 23 198 -64 2327 94 0 7 chr11 78857514 78857823 -71925730 - AluSc SINE Alu -2 307 1 2030 133 0 19 chr11 78857913 78858222 -71925331 - AluSx SINE Alu -9 303 1 1756 162 10 24 chr11 78858240 78858537 -71925016 - AluJb SINE Alu -19 293 1 595 112 0 0 chr11 78858596 78858685 -71924868 + AluSg/x SINE Alu 207 295 -15 1278 179 143 0 chr11 78859185 78859437 -71924116 + AluJo SINE Alu 1 288 -24 1112 208 54 39 chr11 78859600 78859932 -71923621 + MER46C DNA MER2_type 1 337 -1 264 59 0 0 chr11 78861687 78861721 -71921832 + (A)n Simple_repeat Simple_repeat 1 34 0 2227 52 0 28 chr11 78861739 78862057 -71921496 - AluY SINE Alu 0 310 1 225 0 0 0 chr11 78862190 78862215 -71921338 + (A)n Simple_repeat Simple_repeat 1 25 0 1978 150 3 0 chr11 78862260 78862553 -71921000 + AluJb SINE Alu 1 294 -18 24 0 0 0 chr11 78862559 78862583 -71920970 + AT_rich Low_complexity Low_complexity 1 24 0 1671 156 35 93 chr11 78862634 78862715 -71920838 + MER65A LTR ERV1 40 124 -321 2000 126 50 30 chr11 78862715 78863017 -71920536 + AluSq SINE Alu 1 308 -5 2333 109 0 0 chr11 78863025 78863337 -71920216 + AluSx SINE Alu 1 312 0 1671 156 35 93 chr11 78863337 78863677 -71919876 + MER65A LTR ERV1 131 445 0 2138 120 3 10 chr11 78863803 78864104 -71919449 + AluSx SINE Alu 2 300 -12 243 309 266 10 chr11 78864793 78865000 -71918553 - L2 LINE L2 -940 2374 2115 1799 181 83 12 chr11 78865006 78865405 -71918148 - LTR65 LTR ERV1 0 669 237 2291 116 6 3 chr11 78865405 78865716 -71917837 - AluSx SINE Alu 0 312 1 1799 181 83 12 chr11 78865716 78865737 -71917816 - LTR65 LTR ERV1 -432 237 219 2101 113 0 27 chr11 78865748 78866049 -71917504 - AluSx SINE Alu -19 293 1 596 189 30 15 chr11 78866063 78866195 -71917358 - MER4C LTR ERV1 0 465 332 1254 160 24 136 chr11 78866201 78866341 -71917212 + AluJb SINE Alu 1 84 -218 1974 105 3 54 chr11 78866341 78866479 -71917074 + AluSx SINE Alu 3 147 -165 2113 103 7 20 chr11 78866479 78866779 -71916774 + AluSg SINE Alu 1 296 -14 1974 105 3 54 chr11 78866779 78866953 -71916600 + AluSx SINE Alu 147 299 -13 1254 160 24 136 chr11 78866953 78867144 -71916409 + AluJb SINE Alu 84 295 -7 1755 66 0 33 chr11 78867147 78867389 -71916164 + AluY SINE Alu 1 234 -77 863 241 103 30 chr11 78867937 78868402 -71915151 - L1MC5 LINE L1 -48 7913 7415 469 208 20 30 chr11 78868565 78868666 -71914887 + MLT1D LTR MaLR 1 100 -405 * 472 246 37 8 chr11 78868659 78868793 -71914760 - MLT1B LTR MaLR -89 301 164 1072 100 0 0 chr11 78868807 78868967 -71914586 - L1MA3 LINE L1 -1 6304 6145 8931 53 12 0 chr11 78868967 78870876 -71912677 - L1PA6 LINE L1 -1 6153 4223 2187 114 3 3 chr11 78871720 78872026 -71911527 - AluSx SINE Alu -6 306 1 1424 123 5 19 chr11 78872130 78872342 -71911211 - AluSc SINE Alu -100 209 1 350 325 60 24 chr11 78872390 78872556 -71910997 - L2 LINE L2 0 3272 3101 202 341 147 45 chr11 78873535 78874156 -71909397 - L2 LINE L2 -816 2498 1815 1342 166 15 19 chr11 78875789 78876054 -71907499 + MLT2C1 LTR ERVL 134 397 0 203 277 21 99 chr11 78876240 78876381 -71907172 + L2 LINE L2 2302 2431 -883 21 0 0 0 chr11 78877217 78877238 -71906315 + AT_rich Low_complexity Low_complexity 1 21 0 2114 122 0 20 chr11 78877695 78878022 -71905531 - AluSx SINE Alu 0 312 1 4131 122 91 75 chr11 78878508 78879409 -71904144 + pTR5 LTR ERV1 1524 2438 0 2151 136 0 0 chr11 78879535 78879829 -71903724 + AluSx SINE Alu 1 294 -18 22 35 0 0 chr11 78880544 78880573 -71902980 + AT_rich Low_complexity Low_complexity 1 29 0 1527 187 8 0 chr11 78881003 78881254 -71902299 - AluJo SINE Alu -59 253 1 1740 130 40 87 chr11 78881352 78881674 -71901879 - AluSx SINE Alu -5 307 1 945 63 0 0 chr11 78881866 78881977 -71901576 - AluY SINE Alu -196 115 5 22 0 0 0 chr11 78882078 78882100 -71901453 + AT_rich Low_complexity Low_complexity 1 22 0 991 168 0 13 chr11 78882768 78882923 -71900630 + FRAM SINE Alu 1 145 -31 186 43 0 0 chr11 78882926 78882949 -71900604 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5228 125 221 29 chr11 78883117 78884189 -71899364 + MER52C LTR ERV1 1 1278 0 712 180 116 47 chr11 78884610 78884656 -71898897 - MER5A DNA MER1_type -5 184 143 2031 134 29 10 chr11 78884656 78884970 -71898583 + L1MC1 LINE L1 6014 6333 0 712 180 116 47 chr11 78884970 78885095 -71898458 - MER5A DNA MER1_type -46 143 1 402 164 43 78 chr11 78885501 78885617 -71897936 + L1MC5 LINE L1 7820 7931 -30 223 322 106 76 chr11 78885652 78885888 -71897665 + L2 LINE L2 2735 2977 -337 5203 25 0 0 chr11 78886123 78886690 -71896863 - L1PA4 LINE L1 -3 6152 5586 2129 137 191 3 chr11 78887472 78887860 -71895693 + MER65C LTR ERV1 1 461 0 1870 147 31 0 chr11 78887868 78888161 -71895392 + AluSx SINE Alu 1 302 -10 59 0 0 27 chr11 78888183 78888198 -71895355 + AT_rich Low_complexity Low_complexity 1 15 -57 2136 61 57 34 chr11 78888198 78888495 -71895058 + L1MA1 LINE L1 5998 6301 -1 1851 152 3 39 chr11 78888495 78888805 -71894748 - AluSx SINE Alu -13 299 1 59 0 0 27 chr11 78888805 78888862 -71894691 + AT_rich Low_complexity Low_complexity 13 72 0 2210 119 0 0 chr11 78888883 78889177 -71894376 + AluSg SINE Alu 1 294 -16 634 345 88 28 chr11 78889491 78889989 -71893564 + L2 LINE L2 2444 2971 -343 395 299 64 21 chr11 78890072 78890259 -71893294 + L2 LINE L2 3117 3311 -2 444 209 0 11 chr11 78890869 78890960 -71892593 + MLT1K LTR MaLR 495 584 -4 2073 163 0 0 chr11 78891227 78891534 -71892019 + AluJb SINE Alu 2 308 -4 2174 120 0 10 chr11 78891711 78892012 -71891541 - AluSx SINE Alu -14 298 1 233 313 12 12 chr11 78893438 78893521 -71890032 + MIR SINE MIR 53 135 -127 210 294 198 16 chr11 78893636 78893762 -71889791 + MIR SINE MIR 28 176 -86 856 152 0 36 chr11 78893871 78894009 -71889544 + FLAM_C SINE Alu 1 133 0 1853 196 25 2 chr11 78894018 78894411 -71889142 - L1M4 LINE L1 -5106 1436 1035 636 98 0 0 chr11 78894938 78895020 -71888533 - AluY SINE Alu -227 83 2 200 271 0 0 chr11 78895022 78895070 -71888483 - L2 LINE L2 -15 3298 3251 937 69 0 0 chr11 78895555 78895671 -71887882 - AluSp/q SINE Alu -6 307 192 2309 110 3 0 chr11 78896988 78897296 -71886257 - AluSx SINE Alu -3 309 1 24 53 0 0 chr11 78898537 78898575 -71884978 + AT_rich Low_complexity Low_complexity 1 38 0 240 231 187 22 chr11 78898581 78898672 -71884881 + L2 LINE L2 3167 3272 0 49 43 0 0 chr11 78898744 78898814 -71884739 + AT_rich Low_complexity Low_complexity 1 70 0 505 252 141 78 chr11 78898960 78899399 -71884154 + L1ME4a LINE L1 5378 5851 -270 2506 167 34 5 chr11 78899399 78899813 -71883740 + MSTB LTR MaLR 1 426 0 505 252 141 78 chr11 78899813 78899850 -71883703 + L1ME4a LINE L1 5851 5884 -237 237 237 167 39 chr11 78899883 78900039 -71883514 + L1ME4a LINE L1 5946 6121 0 250 200 0 0 chr11 78900122 78900167 -71883386 - L1M4 LINE L1 -705 5479 5435 809 176 29 0 chr11 78900167 78900303 -71883250 - AluJo/FRAM SINE Alu -19 293 154 336 133 0 0 chr11 78900306 78900351 -71883202 - Alu SINE Alu -255 46 2 2112 122 0 3 chr11 78900377 78900671 -71882882 - AluSq SINE Alu -20 293 1 22 0 0 0 chr11 78901037 78901059 -71882494 + AT_rich Low_complexity Low_complexity 1 22 0 252 299 117 0 chr11 78901059 78901136 -71882417 + L2 LINE L2 3222 3307 -6 16072 31 6 0 chr11 78901364 78903935 -71879618 + L1PA4 LINE L1 3576 6153 -2 180 0 0 0 chr11 78904082 78904102 -71879451 + (A)n Simple_repeat Simple_repeat 1 20 0 346 236 101 11 chr11 78904104 78904193 -71879360 - MIR SINE MIR -128 134 38 304 125 54 0 chr11 78905512 78905568 -71877985 + MER53 DNA DNA 94 152 -37 2182 101 21 0 chr11 78905571 78905857 -71877696 - AluSg SINE Alu -18 292 1 1752 155 35 11 chr11 78905859 78906143 -71877410 - AluJo SINE Alu -21 291 1 419 268 65 0 chr11 78906143 78906266 -71877287 + MIR SINE MIR 120 250 -12 364 310 48 7 chr11 78907267 78907412 -71876141 + MIR3 SINE MIR 9 159 -49 375 226 32 175 chr11 78907991 78908243 -71875310 - MIR SINE MIR 0 262 47 2289 95 9 16 chr11 78908420 78908735 -71874818 + AluSq SINE Alu 1 313 0 591 234 21 0 chr11 78908735 78908880 -71874673 + L1MB4 LINE L1 5924 6071 -109 1798 175 0 10 chr11 78908880 78909177 -71874376 + AluJb SINE Alu 1 294 -18 256 151 0 19 chr11 78909177 78909230 -71874323 + L1MB3 LINE L1 6125 6176 -7 2299 119 0 0 chr11 78909274 78909586 -71873967 + AluSx SINE Alu 1 312 0 2352 89 3 10 chr11 78909594 78909907 -71873646 + AluSx SINE Alu 1 311 -1 547 266 54 45 chr11 78910068 78910144 -71873409 + L1ME LINE L1 5415 5489 -632 2059 150 45 6 chr11 78910144 78910477 -71873076 + MER7A DNA MER2_type 2 345 -1 547 266 54 45 chr11 78910477 78910622 -71872931 + L1ME LINE L1 5489 5638 -483 2427 76 0 13 chr11 78910797 78911111 -71872442 - AluSg SINE Alu 0 310 1 878 193 0 12 chr11 78911111 78911277 -71872276 - AluJb SINE Alu -13 299 136 396 0 0 0 chr11 78911278 78911322 -71872231 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1297 217 40 4 chr11 78911322 78911473 -71872080 - AluJb SINE Alu -30 282 115 194 0 39 0 chr11 78911473 78911499 -71872054 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1297 217 40 4 chr11 78911499 78911619 -71871934 - AluJb SINE Alu -197 115 1 965 120 8 0 chr11 78911971 78912104 -71871449 + AluJb SINE Alu 1 134 -178 192 40 0 0 chr11 78912186 78912211 -71871342 + (T)n Simple_repeat Simple_repeat 1 25 0 1666 167 0 20 chr11 78912496 78912789 -71870764 + AluJo SINE Alu 1 287 -25 1605 153 30 33 chr11 78913679 78913811 -71869742 + AluJo SINE Alu 1 132 -180 2799 23 0 0 chr11 78913811 78914119 -71869434 + AluYa5 SINE Alu 1 308 -3 1605 153 30 33 chr11 78914119 78914287 -71869266 + AluJo SINE Alu 132 300 -12 22 35 0 0 chr11 78914360 78914389 -71869164 + AT_rich Low_complexity Low_complexity 1 29 0 34 89 0 0 chr11 78915915 78916005 -71867548 + AT_rich Low_complexity Low_complexity 1 90 0 2467 73 0 0 chr11 78917004 78917306 -71866247 - AluY SINE Alu -9 302 1 354 324 46 50 chr11 78917728 78917947 -71865606 + L2 LINE L2 2186 2403 -911 182 167 0 71 chr11 78920908 78920950 -71862603 - MIR SINE MIR -3 259 221 9570 41 1 7 chr11 78921153 78922360 -71861193 + L1PA4 LINE L1 2641 3840 -2306 14296 27 2 0 chr11 78922360 78924728 -71858825 + L1PA4 LINE L1 3792 6165 0 360 268 127 14 chr11 78925111 78925182 -71858371 - MIR SINE MIR -34 228 166 291 114 0 0 chr11 78925182 78925226 -71858327 + (TAG)n Simple_repeat Simple_repeat 3 46 0 360 268 127 14 chr11 78925226 78925296 -71858257 - MIR SINE MIR -96 166 71 1711 63 0 5 chr11 78925376 78925583 -71857970 + AluY SINE Alu 96 301 -10 1787 173 62 19 chr11 78925622 78925993 -71857560 - L1MB7 LINE L1 -9 6175 5789 1925 147 0 22 chr11 78926217 78926529 -71857024 + AluJb SINE Alu 1 305 -7 21 0 0 0 chr11 78926783 78926804 -71856749 + AT_rich Low_complexity Low_complexity 1 21 0 235 245 191 28 chr11 78926978 78927123 -71856430 + MIR SINE MIR 30 190 -64 366 439 7 39 chr11 78927506 78927916 -71855637 + L1MEc LINE L1 42 438 -5958 252 236 0 14 chr11 78928406 78928478 -71855075 + L1M3f LINE L1 1022 1092 -4236 1856 161 27 0 chr11 78928497 78928789 -71854764 - AluJb SINE Alu -12 300 1 319 279 0 27 chr11 78928939 78929050 -71854503 + L1MEc LINE L1 1933 2040 -4356 2109 119 3 7 chr11 78929054 78929348 -71854205 + AluSx SINE Alu 1 293 -19 309 275 58 17 chr11 78929389 78929509 -71854044 + L1MEc LINE L1 2016 2140 -4256 1011 196 28 23 chr11 78929515 78929729 -71853824 + L1M3 LINE L1 5392 5606 -577 832 259 92 15 chr11 78929729 78929991 -71853562 + MLT1K LTR MaLR 300 581 -7 2461 98 0 0 chr11 78930109 78930416 -71853137 - AluSx SINE Alu -5 307 1 327 25 0 0 chr11 78930663 78930703 -71852850 + (CA)n Simple_repeat Simple_repeat 2 41 0 280 300 20 30 chr11 78932286 78932386 -71851167 - MIR SINE MIR -110 152 54 30 45 0 0 chr11 78933359 78933403 -71850150 + AT_rich Low_complexity Low_complexity 1 44 0 485 313 58 116 chr11 78933455 78933816 -71849737 + L2 LINE L2 2933 3272 0 270 308 87 93 chr11 78933943 78934115 -71849438 + MIR SINE MIR 20 190 -72 2613 11 0 0 chr11 78934285 78934566 -71848987 - AluYa5 SINE Alu -14 297 17 2119 112 3 10 chr11 78934627 78934932 -71848621 + AluSx SINE Alu 7 309 -3 459 331 50 0 chr11 78934969 78935129 -71848424 - MIR SINE MIR -27 235 68 * 942 295 13 13 chr11 78935127 78935439 -71848114 + L2 LINE L2 786 1097 -2217 339 255 181 13 chr11 78935644 78935793 -71847760 - MIR SINE MIR 0 262 89 2205 141 0 0 chr11 78936948 78937260 -71846293 - AluSx SINE Alu 0 312 1 331 294 14 14 chr11 78937412 78937555 -71845998 - L1ME LINE L1 -458 5663 5521 2094 115 0 10 chr11 78937614 78937919 -71845634 - AluY SINE Alu -8 303 2 3528 172 78 53 chr11 78937978 78938122 -71845431 - L1MB5 LINE L1 0 6174 6035 2347 98 0 6 chr11 78938122 78938437 -71845116 + AluSq SINE Alu 1 313 0 3528 172 78 53 chr11 78938437 78939595 -71843958 - L1MB5 LINE L1 -139 6035 4839 473 244 58 49 chr11 78939769 78939974 -71843579 + MLT1J2 LTR MaLR 21 227 -223 223 200 120 0 chr11 78940408 78940458 -71843095 + MIR SINE MIR 197 252 -10 2259 119 0 0 chr11 78941282 78941577 -71841976 - AluSx SINE Alu -17 295 1 235 179 0 0 chr11 78941687 78941726 -71841827 - L2 LINE L2 -12 3301 3263 1263 299 175 16 chr11 78942505 78943149 -71840404 - L2 LINE L2 -6 3307 2500 2020 133 13 13 chr11 78943149 78943458 -71840095 - AluJo SINE Alu -3 309 1 1263 299 175 16 chr11 78943458 78943635 -71839918 - L2 LINE L2 -813 2500 2352 450 274 15 49 chr11 78943678 78943882 -71839671 + L1MC4 LINE L1 6471 6667 -1375 3275 195 96 11 chr11 78943903 78944645 -71838908 - MER21B LTR ERV1 -16 847 43 387 227 0 0 chr11 78944645 78944720 -71838833 - MER21B LTR ERV1 -771 92 18 345 149 0 81 chr11 78944753 78944827 -71838726 - MER21B LTR ERV1 -795 68 1 2178 205 112 7 chr11 78944827 78945382 -71838171 + L1MC4 LINE L1 6686 7298 -744 1364 158 132 3 chr11 78945385 78945741 -71837812 - MLT1A1 LTR MaLR 0 365 1 1619 227 99 87 chr11 78945743 78945986 -71837567 + L1MC4 LINE L1 7304 7542 -500 3729 16 0 0 chr11 78945986 78946412 -71837141 - L1PA2 LINE L1 -1 6154 5729 1619 227 99 87 chr11 78946412 78946896 -71836657 + L1MC4 LINE L1 7542 8040 -2 1935 151 3 0 chr11 78947188 78947502 -71836051 + AluSx SINE Alu 1 315 0 297 0 0 0 chr11 78947946 78947979 -71835574 + (TG)n Simple_repeat Simple_repeat 2 34 0 2565 48 0 19 chr11 78948173 78948486 -71835067 - AluY SINE Alu -4 307 1 330 26 0 0 chr11 78948805 78948844 -71834709 + (TG)n Simple_repeat Simple_repeat 1 39 0 1874 187 133 0 chr11 78948964 78949339 -71834214 - MSTB LTR MaLR -1 425 1 390 344 75 0 chr11 78949433 78949593 -71833960 - MER117 DNA MER1_type -23 174 3 1805 157 27 14 chr11 78950185 78950357 -71833196 - AluJo SINE Alu -14 298 119 261 0 0 0 chr11 78950357 78950386 -71833167 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1805 157 27 14 chr11 78950386 78950507 -71833046 - AluJo SINE Alu -193 119 1 1041 202 34 17 chr11 78951066 78951304 -71832249 + Charlie1 DNA MER1_type 1 242 -2519 768 127 8 0 chr11 78951292 78951426 -71832127 + Charlie1 DNA MER1_type 2627 2761 0 * 326 314 50 63 chr11 78951589 78951828 -71831725 + L3 LINE CR1 215 450 -1127 918 204 88 22 chr11 78951853 78952079 -71831474 + MIR SINE MIR 1 241 -21 327 227 40 13 chr11 78952102 78952177 -71831376 + L2 LINE L2 3222 3298 -15 646 307 33 29 chr11 78952228 78952472 -71831081 - MIR SINE MIR -12 250 6 570 296 81 56 chr11 78952482 78952512 -71831041 + L3 LINE CR1 479 507 -1070 2164 135 6 3 chr11 78952512 78952845 -71830708 - MER1B DNA MER1_type 0 337 4 570 296 81 56 chr11 78952845 78953209 -71830344 + L3 LINE CR1 507 883 -694 447 361 115 21 chr11 78953255 78953543 -71830010 + L2 LINE L2 2932 3246 -26 279 321 134 53 chr11 78953642 78953740 -71829813 + L2 LINE L2 2612 2701 -613 2459 70 0 0 chr11 78953740 78954038 -71829515 - AluY SINE Alu -13 298 1 279 321 134 53 chr11 78954038 78954201 -71829352 + L2 LINE L2 2701 2894 -420 220 315 79 11 chr11 78954300 78954389 -71829164 - L2 LINE L2 -40 3273 3179 851 242 129 7 chr11 78954527 78954821 -71828732 - L1ME3 LINE L1 -5 6165 5834 301 315 0 11 chr11 78954822 78954911 -71828642 + L1ME1 LINE L1 5782 5869 -301 2123 117 7 0 chr11 78955117 78955407 -71828146 - AluSx SINE Alu -18 294 3 348 348 51 60 chr11 78955589 78955866 -71827687 - L2 LINE L2 -36 3277 2999 2567 43 0 7 chr11 78955866 78956166 -71827387 + AluY SINE Alu 1 298 -13 348 348 51 60 chr11 78956166 78956279 -71827274 - L2 LINE L2 -314 2999 2887 2219 159 30 24 chr11 78956279 78956744 -71826809 + L1MB7 LINE L1 5717 6184 0 348 348 51 60 chr11 78956744 78956758 -71826795 - L2 LINE L2 -426 2887 2874 2452 70 0 3 chr11 78956758 78957058 -71826495 + AluY SINE Alu 1 299 -12 348 348 51 60 chr11 78957058 78957158 -71826395 - L2 LINE L2 -439 2874 2728 505 289 112 29 chr11 78959804 78960119 -71823434 + MLT1G1 LTR MaLR 167 595 0 309 217 84 7 chr11 78960119 78960262 -71823291 + L1ME3A LINE L1 4305 4458 -1688 296 179 179 24 chr11 78960296 78960380 -71823173 + MLT1E2 LTR MaLR 55 151 -503 * 1985 207 95 4 chr11 78960375 78960838 -71822715 + MLT1E2 LTR MaLR 122 626 0 283 259 37 62 chr11 78960838 78961000 -71822553 + L1ME1 LINE L1 6005 6162 -4 490 239 46 73 chr11 78961914 78962053 -71821500 + L1ME3A LINE L1 5632 5762 -408 2433 84 7 0 chr11 78962053 78962363 -71821190 + AluSp SINE Alu 1 312 -1 490 239 46 73 chr11 78962363 78962483 -71821070 + L1ME3A LINE L1 5762 5884 -286 641 207 251 0 chr11 78962730 78962909 -71820644 + MER58A DNA MER1_type 1 224 0 2114 203 8 5 chr11 78963063 78963457 -71820096 - MSTD LTR MaLR -1 395 1 814 194 0 0 chr11 78963486 78963641 -71819912 + MER3 DNA MER1_type 5 159 -50 1611 109 62 0 chr11 78964036 78964292 -71819261 - L1MA6 LINE L1 -397 5903 5632 1813 144 15 15 chr11 78964307 78964621 -71818932 + L1MA4 LINE L1 5957 6289 -11 1765 164 44 10 chr11 78965253 78965546 -71818007 - AluJo SINE Alu -9 303 1 3038 152 19 61 chr11 78965578 78965895 -71817658 + L1M1 LINE L1 4700 5029 -1250 2215 109 7 0 chr11 78965895 78966188 -71817365 - AluSg SINE Alu -15 295 1 3038 152 19 61 chr11 78966188 78966496 -71817057 + L1M1 LINE L1 5029 5348 -931 5608 45 19 62 chr11 78966496 78967289 -71816264 + L1PA5 LINE L1 5396 6154 0 3038 152 19 61 chr11 78967289 78967484 -71816069 + L1M1 LINE L1 5348 5480 -799 1728 144 53 53 chr11 78967484 78967817 -71815736 + THE1C LTR MaLR 1 336 -39 2254 111 3 7 chr11 78967817 78968124 -71815429 - AluSx SINE Alu -6 306 1 1728 144 53 53 chr11 78968124 78968165 -71815388 + THE1C LTR MaLR 335 375 0 3038 152 19 61 chr11 78968165 78968220 -71815333 + L1M1 LINE L1 5480 5536 -743 449 204 127 18 chr11 78968197 78968418 -71815135 + HAL1 LINE L1 1046 1290 -1217 * 861 270 112 27 chr11 78968431 78968842 -71814711 + HAL1 LINE L1 1430 1875 -632 507 354 159 32 chr11 78968954 78969483 -71814070 - L2 LINE L2 -1723 1591 996 213 175 0 0 chr11 78969610 78969650 -71813903 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 324 276 0 11 chr11 78969650 78969737 -71813816 + L1MC4 LINE L1 6614 6699 -1343 246 336 80 26 chr11 78969742 78969855 -71813698 + L2 LINE L2 3141 3259 -13 762 198 35 6 chr11 78970685 78970857 -71812696 + L2 LINE L2 2005 2181 -1133 946 206 6 0 chr11 78970872 78971047 -71812506 - FRAM SINE Alu 0 176 1 187 244 22 0 chr11 78971047 78971092 -71812461 + L2 LINE L2 2165 2210 -1104 1448 243 61 51 chr11 78971094 78971145 -71812408 + L2 LINE L2 2189 2238 -1076 1539 201 16 20 chr11 78971145 78971449 -71812104 - AluJo SINE Alu -9 303 1 1448 243 61 51 chr11 78971449 78971890 -71811663 + L2 LINE L2 2238 2686 -628 538 253 74 50 chr11 78971907 78972109 -71811444 + L2 LINE L2 3101 3307 -6 180 327 18 18 chr11 78972120 78972175 -71811378 - MIR SINE MIR -188 74 20 266 229 124 7 chr11 78972274 78972427 -71811126 + MER113 DNA MER1_type? 19 189 -332 1457 201 76 7 chr11 78972581 78972870 -71810683 + AluJo SINE Alu 1 309 -3 203 132 0 53 chr11 78972876 78972914 -71810639 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 1141 209 11 36 chr11 78972925 78973203 -71810350 + L1MD2 LINE L1 6075 6345 -14 1969 137 27 0 chr11 78973305 78973597 -71809956 + AluSx SINE Alu 1 300 -12 192 389 56 12 chr11 78973831 78973993 -71809560 - L2 LINE L2 -452 2862 2694 23 0 0 0 chr11 78974138 78974161 -71809392 + AT_rich Low_complexity Low_complexity 1 23 0 2101 127 3 3 chr11 78974456 78974748 -71808805 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr11 78974758 78974779 -71808774 + AT_rich Low_complexity Low_complexity 1 21 0 10996 188 87 10 chr11 78974790 78977211 -71806342 - L1M2 LINE L1 -4261 2588 2 559 259 72 32 chr11 78977217 78977495 -71806058 + L1MC4a LINE L1 5588 5876 -1932 325 289 56 35 chr11 78977848 78977990 -71805563 + L2 LINE L2 2367 2511 -803 216 298 0 0 chr11 78977971 78978028 -71805525 - L2 LINE L2 0 3313 3257 * 451 265 111 6 chr11 78978806 78978968 -71804585 + MIR SINE MIR 78 256 -6 487 177 0 0 chr11 78979076 78979155 -71804398 - AluJ/FLAM SINE Alu -233 79 1 1991 134 14 3 chr11 78979363 78979655 -71803898 - AluJo SINE Alu -1 311 17 2259 112 0 0 chr11 78980090 78980386 -71803167 - AluSx SINE Alu -16 296 1 25 0 0 0 chr11 78980796 78980821 -71802732 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr11 78981132 78981168 -71802385 + AT_rich Low_complexity Low_complexity 1 36 0 2172 139 0 0 chr11 78981264 78981566 -71801987 + AluSx SINE Alu 1 302 -10 216 111 0 0 chr11 78981567 78981603 -71801950 + (CCAA)n Simple_repeat Simple_repeat 4 39 0 249 68 0 45 chr11 78982201 78982245 -71801308 + (TTTG)n Simple_repeat Simple_repeat 1 180 0 1567 177 18 4 chr11 78982245 78982522 -71801031 - AluJb SINE Alu -31 281 1 777 211 223 53 chr11 78983146 78983451 -71800102 - L1MC5 LINE L1 -808 7153 6765 219 69 0 0 chr11 78983451 78983480 -71800073 + (TTG)n Simple_repeat Simple_repeat 2 30 0 777 211 223 53 chr11 78983480 78983568 -71799985 - L1MC5 LINE L1 -1196 6765 6693 222 273 122 81 chr11 78983684 78983856 -71799697 + L2 LINE L2 3135 3313 0 195 257 200 50 chr11 78984508 78984648 -71798905 - MIR SINE MIR -49 213 53 24 32 0 0 chr11 78985146 78985177 -71798376 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr11 78985925 78985953 -71797600 + AT_rich Low_complexity Low_complexity 1 28 0 32 43 0 0 chr11 78986058 78986104 -71797449 + AT_rich Low_complexity Low_complexity 1 46 0 1816 147 3 11 chr11 78986134 78986420 -71797133 - AluJo SINE Alu -28 284 1 3289 109 4 2 chr11 78986485 78986969 -71796584 + L1PA13 LINE L1 5677 6161 -2 4418 230 69 47 chr11 78986974 78987050 -71796503 + L1MC3 LINE L1 3943 4016 -2130 1351 171 60 76 chr11 78987050 78987365 -71796188 + AluJo SINE Alu 1 310 -2 4418 230 69 47 chr11 78987365 78989833 -71793720 + L1MC3 LINE L1 4016 5403 -743 2406 121 7 0 chr11 78989853 78990356 -71793197 + L1P4 LINE L1 5110 5616 -547 240 86 0 0 chr11 78990456 78990491 -71793062 + (A)n Simple_repeat Simple_repeat 1 35 0 2378 104 0 0 chr11 78991387 78991696 -71791857 + AluSc SINE Alu 1 309 0 1089 261 4 0 chr11 78992004 78992249 -71791304 + MIR SINE MIR 17 262 0 424 216 99 64 chr11 78992476 78992502 -71791051 + MER104 DNA MER2_type 4 28 -1870 1786 184 0 10 chr11 78992502 78992812 -71790741 - AluJo SINE Alu -5 307 1 424 216 99 64 chr11 78992812 78992956 -71790597 + MER104 DNA MER2_type 28 180 0 650 155 39 0 chr11 78993389 78993518 -71790035 + L1M4 LINE L1 8 141 -6243 * 2252 182 41 107 chr11 78993513 78994189 -71789364 + L1M4 LINE L1 387 1018 -5366 1054 218 33 57 chr11 78994185 78994244 -71789309 + L1M4 LINE L1 3219 3278 -3104 * 1928 134 3 3 chr11 78994244 78994553 -71789000 + AluSx SINE Alu 1 309 0 1054 218 33 57 chr11 78994553 78994914 -71788639 + L1M4 LINE L1 3278 3630 -2752 1025 131 40 15 chr11 78994917 78995116 -71788437 + L1MB4 LINE L1 5732 5935 -245 3317 115 44 41 chr11 78995117 78995544 -71788009 + Tigger3b DNA MER2_type 340 771 -2257 2328 91 7 0 chr11 78995544 78995840 -71787713 + AluSx SINE Alu 1 298 -14 3317 115 44 41 chr11 78995840 78996027 -71787526 + Tigger3b DNA MER2_type 771 956 -275 1219 220 35 4 chr11 78996031 78996290 -71787263 - AluJo SINE Alu -45 267 1 1889 118 43 4 chr11 78996290 78996569 -71786984 + Tigger3b DNA MER2_type 943 1232 0 198 71 0 0 chr11 78996578 78996606 -71786947 + (TG)n Simple_repeat Simple_repeat 2 29 0 2953 170 15 0 chr11 78997378 78997901 -71785652 + L1MB7 LINE L1 5462 5992 -192 243 290 81 28 chr11 78997987 78998235 -71785318 + L1M4 LINE L1 4908 5168 -1214 2764 23 0 0 chr11 78998336 78998644 -71784909 - AluYa5 SINE Alu -3 308 1 2467 185 28 4 chr11 78998882 78999375 -71784178 - L1MB5 LINE L1 -8 6166 5662 2379 80 0 32 chr11 78999378 78999692 -71783861 + AluSx SINE Alu 3 306 -6 457 337 67 64 chr11 78999758 78999878 -71783675 + L2 LINE L2 2896 3014 -258 2138 107 21 3 chr11 78999878 79000168 -71783385 + AluSx SINE Alu 2 296 -16 457 337 67 64 chr11 79000168 79000255 -71783298 + L2 LINE L2 3014 3099 -173 1676 174 3 43 chr11 79000255 79000559 -71782994 - AluJo SINE Alu -20 292 1 457 337 67 64 chr11 79000559 79000724 -71782829 + L2 LINE L2 3099 3270 -2 2302 197 65 54 chr11 79000944 79001582 -71781971 + MER77 LTR ERV1 41 728 -4 1445 71 0 16 chr11 79001724 79001908 -71781645 - AluSp SINE Alu -16 297 117 379 308 241 17 chr11 79002271 79002619 -71780934 - L3 LINE CR1 -69 1508 1083 2208 101 0 36 chr11 79002619 79002926 -71780627 + AluSc SINE Alu 3 298 -11 539 206 50 35 chr11 79002980 79003121 -71780432 + MIR SINE MIR 110 252 -10 586 249 140 24 chr11 79005081 79005374 -71778179 + L1M4 LINE L1 4530 4856 -1290 462 264 50 67 chr11 79005601 79005961 -71777592 + L1M4 LINE L1 4923 5276 -870 261 128 27 0 chr11 79005967 79006014 -71777539 + Alu SINE Alu 1 42 -257 2263 90 3 7 chr11 79006114 79006415 -71777138 - AluSc SINE Alu -9 300 1 1088 69 0 0 chr11 79006416 79006547 -71777006 - AluSq/x SINE Alu -178 134 4 388 279 82 0 chr11 79006588 79006710 -71776843 - MIR SINE MIR 0 262 131 971 189 0 0 chr11 79006777 79006946 -71776607 + AluSp SINE Alu 134 302 -11 23 54 0 0 chr11 79006959 79006996 -71776557 + AT_rich Low_complexity Low_complexity 1 37 0 1988 125 0 4 chr11 79007035 79007315 -71776238 - AluSc SINE Alu -28 281 3 311 272 110 93 chr11 79007326 79007482 -71776071 - HAL1 LINE L1 -5 2502 2350 252 0 0 0 chr11 79007482 79007510 -71776043 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2052 129 0 17 chr11 79007515 79007809 -71775744 - AluSx SINE Alu -23 289 1 311 272 110 93 chr11 79007809 79007892 -71775661 - HAL1 LINE L1 -160 2347 2253 1990 158 6 3 chr11 79008144 79008455 -71775098 - AluJo SINE Alu 0 312 1 2134 101 7 10 chr11 79008973 79009270 -71774283 + AluSg SINE Alu 1 296 -14 1819 231 79 68 chr11 79009332 79009453 -71774100 - L1ME3 LINE L1 -6 6156 6038 1529 198 7 10 chr11 79009453 79009746 -71773807 + AluJo SINE Alu 1 292 -20 1819 231 79 68 chr11 79009746 79010348 -71773205 - L1ME3 LINE L1 -124 6038 5425 2343 184 96 59 chr11 79010367 79011263 -71772290 - L1ME1 LINE L1 -24 6146 5293 2296 84 40 0 chr11 79011345 79011644 -71771909 - AluY SINE Alu 0 311 1 315 234 36 18 chr11 79011644 79011755 -71771798 - L1MC5 LINE L1 -80 7881 7769 1767 236 31 102 chr11 79011776 79012335 -71771218 - L1MB7 LINE L1 -28 6156 5559 1908 156 0 7 chr11 79012335 79012636 -71770917 - AluJb SINE Alu -13 299 1 1767 236 31 102 chr11 79012636 79012650 -71770903 - L1MB7 LINE L1 -625 5559 5546 1496 120 96 8 chr11 79012650 79012900 -71770653 - AluSx SINE Alu -1 311 40 1767 236 31 102 chr11 79012900 79013086 -71770467 - L1MB7 LINE L1 -638 5546 5450 1391 265 5 2 chr11 79013092 79013485 -71770068 - L1ME LINE L1 -450 5720 5327 1041 136 0 0 chr11 79013559 79013706 -71769847 - FRAM SINE Alu -28 148 2 379 308 241 17 chr11 79013706 79014054 -71769499 + L3 LINE CR1 1083 1508 -69 2330 94 0 7 chr11 79014392 79014700 -71768853 + AluSx SINE Alu 1 306 -6 185 365 0 0 chr11 79014705 79014757 -71768796 - L2 LINE L2 -17 3255 3204 427 253 67 67 chr11 79015342 79015649 -71767904 - L1MEd LINE L1 -4908 1211 902 225 94 0 0 chr11 79015649 79015681 -71767872 + (TATG)n Simple_repeat Simple_repeat 4 35 0 427 253 67 67 chr11 79015681 79015733 -71767820 - L1MEd LINE L1 -5216 903 852 2245 118 0 0 chr11 79015785 79016089 -71767464 - AluSx SINE Alu -8 304 1 1046 169 17 0 chr11 79016089 79016266 -71767287 - AluJb SINE Alu -13 299 120 999 117 0 14 chr11 79016285 79016430 -71767123 - FLAM_C SINE Alu 0 143 1 1390 78 57 114 chr11 79016589 79016870 -71766683 - L1PA11 LINE L1 -1 6173 5909 2207 127 33 28 chr11 79016923 79017285 -71766268 + THE1B LTR MaLR 1 364 0 32096 100 14 63 chr11 79017626 79024098 -71759455 - L1PA7 LINE L1 0 6154 12 216 233 0 0 chr11 79024544 79024587 -71758966 + MIR3 SINE MIR 156 198 -10 1915 100 103 0 chr11 79026255 79026526 -71757027 + AluSx SINE Alu 6 304 -8 2562 53 0 0 chr11 79026939 79027240 -71756313 + AluY SINE Alu 1 301 -10 181 253 30 81 chr11 79027273 79027372 -71756181 - L3 LINE CR1 -107 1470 1377 * 333 307 27 20 chr11 79027366 79027516 -71756037 - L2 LINE L2 -3075 239 89 195 129 0 0 chr11 79027557 79027588 -71755965 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 2440 73 0 10 chr11 79028004 79028317 -71755236 - AluY SINE Alu -1 310 1 196 337 67 0 chr11 79028421 79028510 -71755043 + L2 LINE L2 3178 3272 0 1507 110 95 0 chr11 79029082 79029346 -71754207 - L1MB4 LINE L1 0 6180 5892 273 195 292 7 chr11 79029406 79029560 -71753993 - Charlie7 DNA MER1_type -1 2611 2414 391 186 200 7 chr11 79029608 79029753 -71753800 - Charlie7 DNA MER1_type -2027 585 413 937 152 0 37 chr11 79029760 79029829 -71753724 - FRAM SINE Alu -151 161 91 2090 119 22 35 chr11 79029829 79030198 -71753355 + THE1B LTR MaLR 1 364 0 937 152 0 37 chr11 79030198 79030292 -71753261 - FRAM SINE Alu -221 91 4 871 174 0 14 chr11 79030292 79030435 -71753118 + AluJb SINE Alu 152 292 -20 200 313 0 16 chr11 79030452 79030516 -71753037 + CT-rich Low_complexity Low_complexity 4 66 0 1038 184 5 44 chr11 79030866 79031072 -71752481 - MER58A DNA MER1_type 0 224 27 346 252 78 0 chr11 79031082 79031185 -71752368 - MER5C DNA MER1_type -8 316 206 189 0 0 0 chr11 79031951 79031972 -71751581 + (A)n Simple_repeat Simple_repeat 1 21 0 2179 126 3 0 chr11 79031972 79032273 -71751280 + AluSx SINE Alu 1 302 -10 1214 210 107 62 chr11 79032746 79033074 -71750479 + L1 LINE L1 3495 3852 -2294 1942 132 3 30 chr11 79033074 79033377 -71750176 + AluJb SINE Alu 18 312 0 1214 210 107 62 chr11 79033377 79033515 -71750038 + L1 LINE L1 3852 3982 -2164 388 208 0 0 chr11 79033521 79033593 -71749960 - AluJ/FRAM SINE Alu -3 299 228 550 233 10 0 chr11 79033604 79033756 -71749797 + L1 LINE L1 3980 4134 -2012 255 109 0 0 chr11 79033791 79033825 -71749728 + (TTTCC)n Simple_repeat Simple_repeat 3 39 -9 1773 132 0 36 chr11 79033825 79034106 -71749447 - AluSx SINE Alu -41 271 1 255 109 0 0 chr11 79034106 79034117 -71749436 + (TTTCC)n Simple_repeat Simple_repeat 38 48 0 642 270 25 0 chr11 79035059 79035222 -71748331 - MIR SINE MIR -23 239 73 1035 222 99 15 chr11 79035775 79036118 -71747435 - L1ME2 LINE L1 -337 5827 5456 2104 126 0 28 chr11 79036119 79036436 -71747117 - AluSx SINE Alu -4 308 1 1775 97 11 30 chr11 79036460 79036729 -71746824 + AluSp SINE Alu 1 264 -49 314 193 270 14 chr11 79036829 79036951 -71746602 - FAM SINE Alu -55 120 1 2260 113 3 0 chr11 79037627 79037928 -71745625 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr11 79038350 79038372 -71745181 + AT_rich Low_complexity Low_complexity 1 22 0 254 337 25 30 chr11 79038379 79038578 -71744975 - Charlie3 DNA MER1_type -1146 1564 1367 458 17 17 0 chr11 79038845 79038904 -71744649 + (TG)n Simple_repeat Simple_repeat 2 61 0 25 0 0 0 chr11 79039343 79039368 -71744185 + AT_rich Low_complexity Low_complexity 1 25 0 1399 238 7 3 chr11 79039436 79039738 -71743815 - AluJo SINE Alu -8 304 2 485 185 82 22 chr11 79039753 79039888 -71743665 - MER5C DNA MER1_type -164 160 18 1018 213 52 0 chr11 79040516 79040727 -71742826 + MER58A DNA MER1_type 2 223 -1 205 269 19 0 chr11 79040744 79040796 -71742757 - L3 LINE CR1 -108 1469 1417 13296 27 4 1 chr11 79041075 79043432 -71740121 - L1PA4 LINE L1 0 6155 3792 8917 41 1 7 chr11 79043432 79044639 -71738914 - L1PA4 LINE L1 -2306 3840 2641 187 167 0 71 chr11 79044842 79044884 -71738669 + MIR SINE MIR 221 259 -3 281 347 144 0 chr11 79045907 79046080 -71737473 + MIR SINE MIR 1 198 -64 657 184 0 9 chr11 79047063 79047177 -71736376 + AluJb SINE Alu 3 115 -197 356 328 99 14 chr11 79047329 79047591 -71735962 - L1ME LINE L1 -506 5615 5327 1744 195 0 3 chr11 79047652 79047955 -71735598 + AluJo SINE Alu 1 302 -10 6904 20 1 0 chr11 79048013 79048850 -71734703 - L1PA3 LINE L1 0 6155 5318 2336 100 0 0 chr11 79048856 79049155 -71734398 - AluY SINE Alu -12 299 1 1769 169 10 17 chr11 79049358 79049648 -71733905 - AluJo SINE Alu -24 288 1 880 253 58 98 chr11 79049895 79050345 -71733208 - MLT1J2 LTR MaLR -18 432 1 6919 149 11 25 chr11 79050673 79051719 -71731834 + L1MA4A LINE L1 3935 4994 -1309 2071 129 10 0 chr11 79051719 79052013 -71731540 + AluSx SINE Alu 1 297 -15 6919 149 11 25 chr11 79052013 79053350 -71730203 + L1MA4A LINE L1 4994 6295 -8 1996 140 7 0 chr11 79054398 79054706 -71728847 - AluSx SINE Alu -1 311 2 2247 135 26 3 chr11 79055084 79055461 -71728092 - L1PA16 LINE L1 -4 6162 5777 192 250 0 0 chr11 79055512 79055552 -71728001 + MIR3 SINE MIR 142 181 -27 1640 148 11 15 chr11 79055571 79055835 -71727718 - AluJo SINE Alu -2 310 48 2060 137 30 33 chr11 79056445 79056839 -71726714 + L1MC1 LINE L1 5941 6333 0 1402 127 209 0 chr11 79056846 79057138 -71726415 + Cheshire DNA MER1_type 1950 2302 -118 447 283 14 36 chr11 79057421 79057559 -71725994 - MIR SINE MIR -101 161 27 344 339 35 0 chr11 79057764 79057879 -71725674 + MIR SINE MIR 34 152 -56 2277 93 0 0 chr11 79057925 79058247 -71725306 + AluSc SINE Alu 1 322 0 244 308 51 39 chr11 79058257 79058335 -71725218 + L2 LINE L2 3234 3312 -1 458 292 51 7 chr11 79058337 79058474 -71725079 - MIR SINE MIR -16 246 104 1419 127 112 19 chr11 79058475 79058734 -71724819 + AluJb SINE Alu 1 283 -29 276 186 0 0 chr11 79058734 79058793 -71724760 + (TACG)n Simple_repeat Simple_repeat 4 62 0 340 313 21 0 chr11 79058882 79058978 -71724575 - MER5B DNA MER1_type -1 177 80 1253 62 0 0 chr11 79059699 79059859 -71723694 + L1PA8 LINE L1 6005 6164 -8 341 324 127 60 chr11 79060551 79060641 -71722912 + L2 LINE L2 2561 2644 -670 2479 68 0 0 chr11 79060641 79060937 -71722616 - AluY SINE Alu -15 296 1 341 324 127 60 chr11 79060937 79061145 -71722408 + L2 LINE L2 2644 2879 -435 1603 205 17 14 chr11 79061418 79061711 -71721842 + AluJo SINE Alu 1 294 -18 23 0 0 0 chr11 79061856 79061879 -71721674 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 79061966 79061987 -71721566 + AT_rich Low_complexity Low_complexity 1 21 0 303 355 9 0 chr11 79061994 79062104 -71721449 + L2 LINE L2 3193 3303 -10 650 136 17 153 chr11 79062412 79062462 -71721091 - L1MA9 LINE L1 -293 5998 5943 1874 140 28 3 chr11 79062462 79062748 -71720805 - AluJb SINE Alu -19 293 1 650 136 17 153 chr11 79062748 79062932 -71720621 - L1MA9 LINE L1 -348 5943 5796 202 194 0 0 chr11 79062937 79062973 -71720580 + (TG)n Simple_repeat Simple_repeat 2 37 0 943 204 23 26 chr11 79062987 79063252 -71720301 + L1MA9 LINE L1 6015 6278 -34 3620 208 45 12 chr11 79063869 79063900 -71719653 - L1M4c LINE L1 -5547 837 808 207 0 0 0 chr11 79063900 79063923 -71719630 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3620 208 45 12 chr11 79063923 79064697 -71718856 - L1M4c LINE L1 -5576 808 6 1660 173 50 36 chr11 79064925 79065284 -71718269 - THE1B LTR MaLR 0 364 1 9706 122 15 42 chr11 79065284 79066907 -71716646 - THE1C-int LTR MaLR 0 1580 3 1858 148 58 30 chr11 79066909 79067274 -71716279 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr11 79067439 79067460 -71716093 + AT_rich Low_complexity Low_complexity 1 21 0 313 293 94 11 chr11 79067460 79067651 -71715902 - L1MA9 LINE L1 -38 6274 6068 1154 191 5 23 chr11 79067666 79067881 -71715672 + AluJb SINE Alu 1 211 -101 423 0 0 0 chr11 79067904 79067951 -71715602 + (CATA)n Simple_repeat Simple_repeat 2 48 0 26 30 0 0 chr11 79068254 79068287 -71715266 + AT_rich Low_complexity Low_complexity 1 33 0 6337 89 3 0 chr11 79068287 79069332 -71714221 - L1PA13 LINE L1 -5 6158 5110 4038 229 67 43 chr11 79069352 79071820 -71711733 - L1MC3 LINE L1 -743 5403 4016 1385 171 60 76 chr11 79071820 79072135 -71711418 - AluJo SINE Alu -2 310 1 4038 229 67 43 chr11 79072135 79072213 -71711340 - L1MC3 LINE L1 -2130 4016 3941 3272 109 4 2 chr11 79072216 79072700 -71710853 - L1PA13 LINE L1 -2 6161 5677 1828 147 3 11 chr11 79072765 79073051 -71710502 + AluJo SINE Alu 1 284 -28 32 43 0 0 chr11 79073081 79073127 -71710426 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr11 79073232 79073260 -71710293 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr11 79074008 79074039 -71709514 + AT_rich Low_complexity Low_complexity 1 31 0 189 257 200 50 chr11 79074537 79074677 -71708876 + MIR SINE MIR 53 213 -49 184 270 121 92 chr11 79075329 79075503 -71708050 - L2 LINE L2 0 3313 3135 664 211 223 53 chr11 79075619 79075707 -71707846 + L1MC5 LINE L1 6693 6765 -1196 219 69 0 0 chr11 79075707 79075736 -71707817 + (CAA)n Simple_repeat Simple_repeat 2 30 0 664 211 223 53 chr11 79075736 79076041 -71707512 + L1MC5 LINE L1 6765 7153 -808 1533 176 18 7 chr11 79076665 79076987 -71706566 + AluJb SINE Alu 1 325 0 216 111 0 0 chr11 79077585 79077621 -71705932 + (TTGG)n Simple_repeat Simple_repeat 4 39 0 2720 20 0 0 chr11 79077622 79077923 -71705630 - AluYa5 SINE Alu -10 301 1 2433 185 28 4 chr11 79078161 79078654 -71704899 - L1MB5 LINE L1 -8 6166 5662 2391 82 0 32 chr11 79078655 79078971 -71704582 + AluSx SINE Alu 1 306 -6 459 337 67 64 chr11 79079037 79079157 -71704396 + L2 LINE L2 2896 3014 -258 2152 107 21 3 chr11 79079157 79079447 -71704106 + AluSx SINE Alu 2 296 -16 459 337 67 64 chr11 79079447 79079534 -71704019 + L2 LINE L2 3014 3099 -173 1670 181 0 40 chr11 79079534 79079838 -71703715 - AluJo SINE Alu -20 292 1 459 337 67 64 chr11 79079838 79080003 -71703550 + L2 LINE L2 3099 3270 -2 2115 196 65 54 chr11 79080223 79080861 -71702692 + MER77 LTR ERV1 41 728 -8 284 67 0 0 chr11 79081003 79081048 -71702505 - AluSp/q SINE Alu -6 297 253 1613 150 8 26 chr11 79081148 79081414 -71702139 - AluJb SINE Alu -34 278 18 2407 249 66 44 chr11 79081415 79081976 -71701577 - L1M4 LINE L1 -2340 3806 3259 561 207 25 33 chr11 79081976 79082097 -71701456 - FLAM_A SINE Alu -13 120 1 2407 249 66 44 chr11 79082097 79082702 -71700851 - L1M4 LINE L1 -2887 3259 2614 1287 220 29 6 chr11 79082705 79083055 -71700498 + L1ME1 LINE L1 4804 5161 -985 1568 206 3 10 chr11 79083056 79083348 -71700205 + AluJo SINE Alu 3 292 -20 1867 161 49 15 chr11 79083350 79083389 -71700164 + L1MB7 LINE L1 5433 5469 -715 183 42 0 0 chr11 79083389 79083413 -71700140 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1867 161 49 15 chr11 79083413 79083764 -71699789 + L1MB7 LINE L1 5469 5836 -348 311 233 273 76 chr11 79084429 79084458 -71699095 - MIR SINE MIR -38 224 202 397 0 0 0 chr11 79084458 79084502 -71699051 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2279 84 3 0 chr11 79084502 79084786 -71698767 - AluSp SINE Alu -28 285 1 311 233 273 76 chr11 79084786 79084927 -71698626 - MIR SINE MIR -59 203 19 180 338 56 0 chr11 79085386 79085457 -71698096 + MIR3 SINE MIR 86 160 -48 246 62 0 0 chr11 79085546 79085578 -71697975 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1939 138 11 0 chr11 79085581 79085856 -71697697 - AluJo SINE Alu -30 282 5 384 198 4 2 chr11 79085886 79085980 -71697573 + L1MB7 LINE L1 5808 5902 -276 768 213 27 16 chr11 79085981 79086169 -71697384 - MLT2D LTR ERVL 0 414 225 1717 227 21 36 chr11 79086181 79086653 -71696900 + L1ME1 LINE L1 5315 5779 -387 1147 150 141 23 chr11 79086660 79087006 -71696547 + MSTD LTR MaLR 1 396 0 946 230 80 71 chr11 79087018 79087383 -71696170 + L1ME1 LINE L1 5793 6160 -6 215 357 0 48 chr11 79087548 79087632 -71695921 + L2 LINE L2 3012 3091 -181 2021 115 31 11 chr11 79088399 79088685 -71694868 - AluSx SINE Alu -20 292 1 1999 96 39 0 chr11 79088702 79088982 -71694571 - AluSx SINE Alu -21 291 1 228 380 49 7 chr11 79089163 79089305 -71694248 - MIR SINE MIR -46 216 69 256 277 196 14 chr11 79089656 79089804 -71693749 + MIR SINE MIR 86 260 -2 255 306 10 20 chr11 79090132 79090230 -71693323 - MIR3 SINE MIR 0 208 112 1547 168 8 0 chr11 79090304 79090560 -71692993 + AluJo SINE Alu 55 312 0 1470 193 63 0 chr11 79090752 79091068 -71692485 + MER7A DNA MER2_type 13 346 0 1853 115 17 61 chr11 79091176 79091472 -71692081 - AluSc SINE Alu -26 283 1 18294 152 66 18 chr11 79091482 79092676 -71690877 - L1MA3 LINE L1 0 7724 6589 2782 19 0 9 chr11 79092676 79092995 -71690558 - AluYb8 SINE Alu -2 316 1 18294 152 66 18 chr11 79092995 79096789 -71686764 - L1MA3 LINE L1 -1135 6589 2980 2007 120 0 57 chr11 79096789 79097090 -71686463 - AluSx SINE Alu -28 284 1 18294 152 66 18 chr11 79097090 79097481 -71686072 - L1MA3 LINE L1 -4744 2980 2609 1537 157 0 4 chr11 79097481 79097716 -71685837 - AluJb SINE Alu 0 312 79 18294 152 66 18 chr11 79097716 79099477 -71684076 - L1MA3 LINE L1 -5115 2609 177 570 80 270 0 chr11 79099477 79099577 -71683976 - AluY SINE Alu -181 130 4 1996 159 9 6 chr11 79099761 79100107 -71683446 - MLT2C1 LTR ERVL -50 347 1 508 289 120 21 chr11 79100156 79100540 -71683013 - L1M4 LINE L1 -2100 4046 3625 1695 169 19 16 chr11 79100653 79100961 -71682592 - AluJo SINE Alu -3 309 1 745 280 54 17 chr11 79101254 79101493 -71682060 - MIR SINE MIR -13 249 2 462 277 138 28 chr11 79101498 79101751 -71681802 - L1M4 LINE L1 -3006 3140 2860 1121 181 17 98 chr11 79102073 79102160 -71681393 - L1ME2 LINE L1 -36 6128 6036 1998 150 0 7 chr11 79102160 79102467 -71681086 + AluSx SINE Alu 1 305 -7 1121 181 17 98 chr11 79102467 79102738 -71680815 - L1ME2 LINE L1 -128 6036 5799 534 239 284 0 chr11 79102843 79103044 -71680509 - MIR SINE MIR -1 261 4 23 0 0 0 chr11 79103095 79103118 -71680435 + AT_rich Low_complexity Low_complexity 1 23 0 1864 183 0 3 chr11 79103145 79103445 -71680108 + AluJb SINE Alu 1 299 -13 1571 166 72 22 chr11 79103594 79103872 -71679681 - AluJb SINE Alu -20 292 1 226 111 0 0 chr11 79103900 79103936 -71679617 + L1ME LINE L1 5617 5652 -469 2051 121 19 47 chr11 79103989 79104353 -71679200 - THE1A LTR MaLR 0 355 2 2100 140 3 0 chr11 79104573 79104881 -71678672 + AluSq SINE Alu 1 309 -4 324 120 0 0 chr11 79105288 79105338 -71678215 + (CA)n Simple_repeat Simple_repeat 2 51 0 25 51 0 0 chr11 79105550 79105589 -71677964 + AT_rich Low_complexity Low_complexity 1 39 0 406 248 101 0 chr11 79105591 79105700 -71677853 + MIR SINE MIR 84 203 -59 833 253 11 5 chr11 79105873 79106059 -71677494 - MER5A DNA MER1_type 0 189 3 358 300 64 7 chr11 79107524 79107664 -71675889 + MER5B DNA MER1_type 2 149 -29 405 73 0 0 chr11 79108083 79108138 -71675415 - L1P LINE L1 -1165 4981 4927 3311 58 0 0 chr11 79108138 79108541 -71675012 + L1PA5 LINE L1 5737 6146 -8 1405 246 169 33 chr11 79108548 79108600 -71674953 + L1MEc LINE L1 1257 1301 -5095 2367 97 0 0 chr11 79108600 79108900 -71674653 + AluSx SINE Alu 1 300 -12 1405 246 169 33 chr11 79108900 79109549 -71674004 + L1MEc LINE L1 1301 2054 -4342 1514 211 21 7 chr11 79109552 79109841 -71673712 + AluJo SINE Alu 4 296 -16 2333 101 0 0 chr11 79110186 79110482 -71673071 + AluSg SINE Alu 1 296 -14 937 140 27 32 chr11 79110483 79110669 -71672884 + Tigger3(Golem) DNA MER2_type 2569 2753 -276 1257 220 35 4 chr11 79110673 79110932 -71672621 - AluJo SINE Alu -45 267 1 1790 118 43 4 chr11 79110932 79111211 -71672342 + Tigger3(Golem) DNA MER2_type 2740 3029 0 198 71 0 0 chr11 79111220 79111248 -71672305 + (TG)n Simple_repeat Simple_repeat 2 29 0 2792 170 15 0 chr11 79112020 79112543 -71671010 + L1MB7 LINE L1 5462 5992 -192 2308 103 3 0 chr11 79115467 79115769 -71667784 + AluSx SINE Alu 1 303 -9 436 300 111 11 chr11 79116036 79116216 -71667337 + MIR SINE MIR 8 205 -57 2052 114 14 7 chr11 79117329 79117626 -71665927 - AluSx SINE Alu -13 299 1 1208 167 67 13 chr11 79117806 79118045 -71665508 - AluJb SINE Alu -10 302 51 1755 153 13 10 chr11 79118182 79118482 -71665071 - AluJo SINE Alu 0 312 12 238 219 0 68 chr11 79118994 79119067 -71664486 - MIR SINE MIR -98 164 97 2271 104 0 28 chr11 79119221 79119539 -71664014 + AluSx SINE Alu 1 309 -3 2046 140 3 0 chr11 79119894 79120180 -71663373 - AluJb SINE Alu -19 293 7 738 195 89 0 chr11 79120349 79120518 -71663035 - L1MB8 LINE L1 -47 6131 5948 198 0 0 0 chr11 79120559 79120581 -71662972 + (T)n Simple_repeat Simple_repeat 1 22 0 344 339 35 0 chr11 79120823 79120938 -71662615 + MIR SINE MIR 34 152 -56 2277 93 0 0 chr11 79120984 79121306 -71662247 + AluSc SINE Alu 1 322 0 244 308 51 39 chr11 79121316 79121394 -71662159 + L2 LINE L2 3234 3312 -1 537 297 137 5 chr11 79121396 79121534 -71662019 - MIR SINE MIR -16 246 128 1474 137 104 18 chr11 79121534 79121794 -71661759 + AluJb SINE Alu 1 288 -24 501 17 0 0 chr11 79121794 79121852 -71661701 + (CATA)n Simple_repeat Simple_repeat 3 60 0 1474 137 104 18 chr11 79121852 79121869 -71661684 + AluJb SINE Alu 288 302 -10 537 297 137 5 chr11 79121869 79121941 -71661612 - MIR SINE MIR -134 128 8 340 313 21 0 chr11 79121941 79122037 -71661516 - MER5B DNA MER1_type -1 177 80 1253 62 0 0 chr11 79122758 79122918 -71660635 + L1PA8 LINE L1 6005 6164 -8 2479 68 0 0 chr11 79123701 79123997 -71659556 - AluY SINE Alu -15 296 1 1655 160 63 19 chr11 79124230 79124592 -71658961 + L1MB7 LINE L1 5798 6175 -9 1676 68 0 5 chr11 79124631 79124838 -71658715 - AluY SINE Alu -10 301 96 366 268 127 14 chr11 79124918 79124988 -71658565 + MIR SINE MIR 71 132 -130 291 114 0 0 chr11 79124988 79125032 -71658521 + (CTA)n Simple_repeat Simple_repeat 3 46 0 366 268 127 14 chr11 79125032 79125103 -71658450 + MIR SINE MIR 132 228 -34 183 192 48 115 chr11 79125292 79125396 -71658157 + L3 LINE CR1 1293 1389 -188 1076 169 52 29 chr11 79125558 79125830 -71657723 + L1MA8 LINE L1 6009 6286 -5 421 258 24 42 chr11 79125898 79126065 -71657488 + ERVL LTR ERVL 2291 2454 -3310 673 356 61 8 chr11 79126352 79126714 -71656839 - L2 LINE L2 0 3313 2933 270 0 0 0 chr11 79126833 79126863 -71656690 + (A)n Simple_repeat Simple_repeat 1 30 0 1871 178 7 0 chr11 79127248 79127546 -71656007 + AluSx SINE Alu 1 300 -12 574 164 32 90 chr11 79128298 79128487 -71655066 + AluSx SINE Alu 1 178 -134 243 323 42 0 chr11 79128962 79129058 -71654495 + MLT1L LTR MaLR 204 303 -312 300 274 49 29 chr11 79129107 79129209 -71654344 + MLT1L LTR MaLR 291 394 -221 2328 98 0 7 chr11 79129358 79129665 -71653888 - AluSc SINE Alu -4 305 1 3510 111 8 19 chr11 79129770 79130303 -71653250 + MER1A DNA MER1_type 1 527 0 2355 57 20 20 chr11 79130367 79130667 -71652886 - AluY SINE Alu -11 300 1 630 190 183 7 chr11 79130748 79130890 -71652663 - FAM SINE Alu -8 167 1 1790 146 6 70 chr11 79131593 79131729 -71651824 + AluSx SINE Alu 1 144 -168 2262 75 0 39 chr11 79131729 79132036 -71651517 + AluY SINE Alu 1 295 -16 1790 146 6 70 chr11 79132036 79132229 -71651324 + AluSx SINE Alu 144 309 -3 1071 177 174 17 chr11 79132237 79132599 -71650954 - HsTC2 DNA Tc2 -22 1876 1282 379 195 228 8 chr11 79132587 79132710 -71650843 - HsTC2 DNA Tc2 -1747 151 2 * 504 324 76 5 chr11 79132799 79132984 -71650569 - MIR SINE MIR -42 220 23 1841 167 7 7 chr11 79133037 79133337 -71650216 + AluJb SINE Alu 4 303 -9 3098 136 89 21 chr11 79133352 79133984 -71649569 + L1MB8 LINE L1 5207 5872 -306 1680 134 12 69 chr11 79133986 79134306 -71649247 + AluSx SINE Alu 1 302 -10 1192 113 0 0 chr11 79134431 79134590 -71648963 - AluSq SINE Alu -154 159 1 234 296 0 45 chr11 79135028 79135116 -71648437 + MIR3 SINE MIR 112 195 -13 727 200 63 11 chr11 79135215 79135390 -71648163 + MER53 DNA DNA 1 184 -5 239 284 27 0 chr11 79135936 79136010 -71647543 - L2 LINE L2 -75 3197 3122 224 245 75 53 chr11 79137318 79137412 -71646141 + L2 LINE L2 3139 3234 -38 * 245 250 19 0 chr11 79137382 79137434 -71646119 - L2 LINE L2 -21 3251 3199 253 297 0 0 chr11 79138356 79138430 -71645123 + MIR SINE MIR 189 262 0 2348 105 3 0 chr11 79139157 79139461 -71644092 - AluSx SINE Alu -7 305 1 180 0 0 0 chr11 79142607 79142627 -71640926 + (A)n Simple_repeat Simple_repeat 1 20 0 760 195 89 0 chr11 79142668 79142837 -71640716 + L1MB8 LINE L1 5948 6131 -47 2183 126 3 0 chr11 79143006 79143292 -71640261 + AluJb SINE Alu 7 293 -19 2327 104 0 28 chr11 79143647 79143965 -71639588 - AluSx SINE Alu -3 309 1 226 219 0 68 chr11 79144119 79144192 -71639361 + MIR SINE MIR 97 164 -98 1789 153 13 10 chr11 79144704 79145004 -71638549 + AluJo SINE Alu 12 312 0 1229 167 67 13 chr11 79145140 79145379 -71638174 + AluJb SINE Alu 51 302 -10 2117 114 14 7 chr11 79145559 79145856 -71637697 + AluSx SINE Alu 1 299 -13 396 300 111 11 chr11 79146969 79147149 -71636404 - MIR SINE MIR -57 205 8 1859 176 10 0 chr11 79147416 79147717 -71635836 - AluSx SINE Alu -8 304 1 267 227 9 36 chr11 79147717 79147827 -71635726 + L1M4 LINE L1 3059 3165 -2981 257 271 52 85 chr11 79147869 79148161 -71635392 + L2 LINE L2 2768 3047 -225 301 331 41 37 chr11 79148281 79148526 -71635027 - L2 LINE L2 -223 3049 2804 306 321 22 58 chr11 79149035 79149172 -71634381 + MIR3 SINE MIR 10 141 -67 433 201 109 10 chr11 79149391 79149587 -71633966 + MER45A DNA AcHobo 1 178 0 235 271 0 14 chr11 79149671 79149741 -71633812 - MST-int LTR MaLR -865 786 718 320 275 114 0 chr11 79149984 79150115 -71633438 + MIR SINE MIR 103 248 -14 2315 116 0 0 chr11 79150170 79150471 -71633082 + AluSx SINE Alu 1 301 -11 285 302 39 23 chr11 79150476 79150605 -71632948 - L2 LINE L2 -43 3229 3099 1761 180 0 0 chr11 79151574 79151858 -71631695 + AluJo SINE Alu 5 288 -24 233 211 19 0 chr11 79151879 79151931 -71631622 - MIR SINE MIR -102 160 108 259 314 35 12 chr11 79152019 79152105 -71631448 + MIR3 SINE MIR 72 159 -49 199 318 93 0 chr11 79152654 79152761 -71630792 - MIR SINE MIR -62 146 30 240 289 102 16 chr11 79152785 79152913 -71630640 - L2 LINE L2 -2 3270 3132 405 0 0 0 chr11 79153755 79153800 -71629753 + (TG)n Simple_repeat Simple_repeat 2 46 0 260 303 30 0 chr11 79154086 79154185 -71629368 - MIR3 SINE MIR -26 182 81 473 281 135 5 chr11 79154976 79155161 -71628392 + MIR SINE MIR 48 256 -6 2548 74 0 0 chr11 79155163 79155472 -71628081 + AluY SINE Alu 1 309 -2 420 280 17 0 chr11 79155490 79155608 -71627945 - L2 LINE L2 -2 3270 3151 210 250 0 0 chr11 79155669 79155713 -71627840 + L2 LINE L2 3262 3305 -8 236 272 139 29 chr11 79156112 79156298 -71627255 - MIR SINE MIR -10 252 43 251 285 183 22 chr11 79156596 79156733 -71626820 + L3 LINE CR1 1348 1506 -71 389 300 162 9 chr11 79156749 79156959 -71626594 - MIR SINE MIR 0 262 21 374 279 37 48 chr11 79158072 79158244 -71625309 + MIR SINE MIR 38 206 -56 359 290 93 52 chr11 79158420 79158613 -71624940 + MIR SINE MIR 32 232 -30 281 343 19 0 chr11 79158734 79158842 -71624711 + MIR3 SINE MIR 58 167 -41 754 254 108 4 chr11 79159616 79159848 -71623705 - MIR SINE MIR 0 262 7 187 244 0 100 chr11 79159962 79160052 -71623501 - MER5A DNA MER1_type -28 161 81 247 250 0 0 chr11 79160060 79160112 -71623441 + L2 LINE L2 3221 3272 0 516 271 208 0 chr11 79160287 79160494 -71623059 - MIR SINE MIR 0 262 13 473 83 0 14 chr11 79160963 79161035 -71622518 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 1716 189 0 23 chr11 79161043 79161350 -71622203 - AluJb SINE Alu -12 300 1 220 346 10 0 chr11 79162100 79162201 -71621352 + L2 LINE L2 2894 2995 -277 197 309 12 49 chr11 79162209 79162290 -71621263 + MIR SINE MIR 15 92 -170 351 241 0 0 chr11 79162759 79162846 -71620707 + LTR33 LTR ERVL 52 138 -383 420 251 35 35 chr11 79162851 79163022 -71620531 + LTR33 LTR ERVL 335 505 -16 1085 192 5 10 chr11 79163139 79163337 -71620216 + AluJo SINE Alu 116 312 0 219 167 24 0 chr11 79164366 79164408 -71619145 + (CA)n Simple_repeat Simple_repeat 2 44 0 370 345 10 20 chr11 79164409 79164609 -71618944 + L2 LINE L2 2894 3091 -181 273 198 0 18 chr11 79164710 79164782 -71618771 + MIR SINE MIR 52 122 -86 304 250 28 0 chr11 79164990 79165062 -71618491 - MIR3 SINE MIR -48 160 87 298 230 108 0 chr11 79165609 79165683 -71617870 - MIR3 SINE MIR -37 171 90 1396 170 9 94 chr11 79165770 79166111 -71617442 - AluSx SINE Alu 0 312 1 2473 91 0 3 chr11 79166430 79166738 -71616815 + AluSq SINE Alu 1 307 -6 348 341 11 51 chr11 79167382 79167558 -71615995 - L2 LINE L2 -96 3176 3008 425 282 36 0 chr11 79167575 79167685 -71615868 - MIR SINE MIR -78 184 71 192 353 24 12 chr11 79168343 79168428 -71615125 + MIR3 SINE MIR 111 196 -12 522 278 20 61 chr11 79170002 79170200 -71613353 + MIR3 SINE MIR 13 202 -6 183 309 24 24 chr11 79171507 79171591 -71611962 + MIR3 SINE MIR 112 195 -13 3376 147 34 52 chr11 79171751 79171875 -71611678 - L1MB4 LINE L1 -8 6172 6047 2101 107 17 7 chr11 79171875 79172164 -71611389 - AluSx SINE Alu -20 292 1 3376 147 34 52 chr11 79172164 79172795 -71610758 - L1MB4 LINE L1 -133 6047 5430 1475 166 59 62 chr11 79172827 79173146 -71610407 + AluJo SINE Alu 1 318 0 207 239 30 0 chr11 79175239 79175306 -71608247 + (CAAT)n Simple_repeat Simple_repeat 1 69 0 452 300 165 21 chr11 79175434 79175671 -71607882 - L3 LINE CR1 -13 1564 1294 863 122 0 19 chr11 79176466 79176622 -71606931 + L1MA9 LINE L1 6160 6312 0 232 214 57 14 chr11 79176670 79176810 -71606743 + (TTATA)n Simple_repeat Simple_repeat 1 146 0 2231 116 0 25 chr11 79177381 79177699 -71605854 - AluSx SINE Alu -2 310 1 772 299 47 28 chr11 79178007 79178402 -71605151 - MLT1K LTR MaLR -62 526 47 821 273 55 49 chr11 79179198 79179366 -71604187 + LTR33 LTR ERVL 33 199 -322 2091 89 4 0 chr11 79179366 79179624 -71603929 - AluSq SINE Alu -15 298 40 821 273 55 49 chr11 79179624 79179799 -71603754 + LTR33 LTR ERVL 199 378 -143 2073 121 10 26 chr11 79181572 79181879 -71601674 + AluJo SINE Alu 4 305 -7 22 0 0 0 chr11 79181969 79181991 -71601562 + GC_rich Low_complexity Low_complexity 1 22 0 331 241 139 36 chr11 79182941 79183107 -71600446 + MIR SINE MIR 28 210 -52 534 261 60 88 chr11 79183343 79183661 -71599892 + L2 LINE L2 2918 3226 -46 332 319 7 14 chr11 79183832 79183976 -71599577 - L2 LINE L2 -505 2809 2667 231 360 24 32 chr11 79184514 79184639 -71598914 + MIR SINE MIR 64 187 -75 386 271 132 0 chr11 79184835 79184979 -71598574 - MIR SINE MIR -51 211 49 309 303 34 87 chr11 79186147 79186504 -71597049 + L2 LINE L2 2836 3173 -99 229 354 9 18 chr11 79187160 79187273 -71596280 - MIR SINE MIR -60 148 37 193 308 0 0 chr11 79187473 79187525 -71596028 + MIR SINE MIR 88 139 -69 321 299 124 41 chr11 79187836 79188150 -71595403 + L2 LINE L2 2831 3170 -102 242 272 144 32 chr11 79188469 79188594 -71594959 - MIR SINE MIR -67 195 57 281 301 39 48 chr11 79188919 79189062 -71594491 + MIR SINE MIR 23 164 -63 373 235 108 10 chr11 79189200 79189302 -71594251 + MIR SINE MIR 12 123 -139 186 341 103 32 chr11 79189443 79189909 -71593644 - L2 LINE L2 -431 2883 2385 326 242 170 73 chr11 79190433 79190559 -71592994 + MIR3 SINE MIR 14 161 -47 2661 74 5 5 chr11 79190559 79190937 -71592616 - L1PA7 LINE L1 0 6154 5777 326 242 170 73 chr11 79190937 79190975 -71592578 + MIR3 SINE MIR 161 194 -14 180 0 0 0 chr11 79190978 79190998 -71592555 + (TG)n Simple_repeat Simple_repeat 1 20 0 295 330 0 10 chr11 79191953 79192053 -71591500 + MIR SINE MIR 17 115 -147 224 260 52 13 chr11 79192492 79192569 -71590984 + L3 LINE CR1 1390 1469 -108 297 51 0 0 chr11 79192626 79192665 -71590888 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 214 287 58 0 chr11 79193606 79193693 -71589860 - MIR SINE MIR -84 124 33 411 288 42 0 chr11 79194101 79194219 -71589334 - MIR SINE MIR -24 238 116 182 309 75 0 chr11 79194318 79194412 -71589141 - L2 LINE L2 -350 2963 2863 906 149 0 8 chr11 79194890 79195024 -71588529 + AluSx SINE Alu 1 133 -180 1014 197 0 5 chr11 79195145 79195338 -71588215 + AluSx SINE Alu 119 310 0 2252 125 0 6 chr11 79195521 79195832 -71587721 + AluSx SINE Alu 3 311 -1 211 374 63 29 chr11 79196052 79196169 -71587384 + MIR SINE MIR 77 203 -59 2003 120 34 24 chr11 79196169 79196460 -71587093 - AluSx SINE Alu -18 294 1 211 374 63 29 chr11 79196460 79196516 -71587037 + MIR SINE MIR 203 256 -6 208 317 20 40 chr11 79197173 79197274 -71586279 + L3 LINE CR1 1466 1564 -13 735 217 72 12 chr11 79197370 79197536 -71586017 - AluJo SINE Alu -136 176 1 469 205 58 2 chr11 79197539 79197712 -71585841 - MER58B DNA MER1_type -9 332 1 240 250 68 11 chr11 79199361 79199449 -71584104 - MIR3 SINE MIR -52 156 64 429 215 96 91 chr11 79199956 79200165 -71583388 + MER63A DNA MER1_type 1 210 0 254 253 51 13 chr11 79200906 79200985 -71582568 - L3 LINE CR1 -509 1068 987 2356 100 0 7 chr11 79200999 79201299 -71582254 - AluSx SINE Alu -14 298 1 283 304 70 38 chr11 79202387 79202545 -71581008 - MIR SINE MIR -80 182 20 474 368 48 0 chr11 79202626 79202857 -71580696 + MIR SINE MIR 2 243 -19 250 221 29 0 chr11 79203772 79203840 -71579713 + MIR SINE MIR 66 135 -73 215 252 224 21 chr11 79204295 79204438 -71579115 - MIR3 SINE MIR -27 181 10 1677 197 8 24 chr11 79204648 79205018 -71578535 + MLT1A1 LTR MaLR 1 364 -1 181 182 0 68 chr11 79205139 79205183 -71578370 + MIR SINE MIR 120 160 -102 396 216 0 31 chr11 79205582 79205679 -71577874 + LTR33 LTR ERVL 427 520 -1 226 156 0 22 chr11 79206089 79206134 -71577419 + (TG)n Simple_repeat Simple_repeat 2 45 0 287 210 0 49 chr11 79206351 79206432 -71577121 + CT-rich Low_complexity Low_complexity 1 77 0 321 291 0 13 chr11 79207389 79207468 -71576085 + MIR SINE MIR 20 97 -165 2282 95 3 23 chr11 79207501 79207806 -71575747 + AluSx SINE Alu 1 299 -13 401 194 68 29 chr11 79207839 79207942 -71575611 + L2 LINE L2 3170 3276 -37 383 227 0 31 chr11 79208032 79208129 -71575424 - L2 LINE L2 0 3313 3220 2269 107 3 19 chr11 79208131 79208448 -71575105 + AluSx SINE Alu 1 312 0 201 93 56 19 chr11 79208678 79208732 -71574821 + (TATAA)n Simple_repeat Simple_repeat 2 57 0 24 32 0 0 chr11 79208911 79208942 -71574611 + AT_rich Low_complexity Low_complexity 1 31 0 767 155 11 22 chr11 79209103 79209284 -71574269 + CT-rich Low_complexity Low_complexity 2 180 0 1687 170 87 3 chr11 79209296 79209584 -71573969 - AluJb SINE Alu 0 312 1 353 333 89 39 chr11 79209647 79209905 -71573648 - L1M4 LINE L1 -3623 2523 2253 2196 237 76 43 chr11 79209909 79210123 -71573430 - L1MC4a LINE L1 -1634 6243 6038 1762 135 0 35 chr11 79210123 79210405 -71573148 - AluSx SINE Alu 0 312 41 2196 237 76 43 chr11 79210405 79211002 -71572551 - L1MC4a LINE L1 -1839 6038 5397 1987 138 64 0 chr11 79211002 79211329 -71572224 - MER7A DNA MER2_type 0 346 1 2196 237 76 43 chr11 79211329 79211406 -71572147 - L1MC4a LINE L1 -2480 5397 5324 1144 258 92 16 chr11 79211480 79211848 -71571705 - MSTD LTR MaLR 0 396 1 382 271 75 71 chr11 79211863 79211912 -71571641 - L1MEc LINE L1 -966 5249 5202 1947 159 13 7 chr11 79211912 79212221 -71571332 - AluJb SINE Alu -1 311 1 382 271 75 71 chr11 79212221 79212575 -71570978 - L1MEc LINE L1 -1013 5202 2157 2122 143 0 0 chr11 79212627 79212921 -71570632 - AluSx SINE Alu -18 294 1 355 230 0 0 chr11 79213035 79213109 -71570444 - MIR SINE MIR -107 155 82 2419 88 0 0 chr11 79213113 79213408 -71570145 - AluSx SINE Alu -17 295 1 817 169 25 12 chr11 79213572 79213732 -71569821 - L1MC/D LINE L1 -2328 5480 5319 613 281 30 0 chr11 79214272 79214436 -71569117 - MIR SINE MIR -84 178 10 432 309 32 0 chr11 79214599 79214725 -71568828 - L2 LINE L2 -4 3309 3180 294 327 124 0 chr11 79215013 79215166 -71568387 - L2 LINE L2 -542 2772 2601 515 248 64 0 chr11 79215252 79215377 -71568176 - L2 LINE L2 -4 3268 3136 1669 189 3 19 chr11 79216214 79216527 -71567026 - AluJb SINE Alu -4 308 1 1072 194 52 20 chr11 79216860 79217112 -71566441 + LTR48B LTR ERV1 383 642 -2 216 97 0 0 chr11 79217253 79217284 -71566269 + (TG)n Simple_repeat Simple_repeat 2 32 0 246 258 45 0 chr11 79217344 79217433 -71566120 + L1MC4 LINE L1 6614 6706 -1336 2343 107 3 3 chr11 79217433 79217742 -71565811 - AluSg SINE Alu -1 309 1 223 288 23 0 chr11 79217807 79217939 -71565614 + (TA)n Simple_repeat Simple_repeat 1 135 0 239 325 0 12 chr11 79218186 79218266 -71565287 - 5S rRNA rRNA 0 121 43 304 273 182 0 chr11 79218788 79218909 -71564644 + MIR SINE MIR 65 207 -55 370 292 22 0 chr11 79219396 79219533 -71564020 - L1ME4a LINE L1 0 6121 5982 721 301 94 20 chr11 79220069 79220557 -71562996 - L3 LINE CR1 -376 1201 618 418 321 91 25 chr11 79220610 79221015 -71562538 + L1PA13 LINE L1 5587 6018 -145 * 2099 144 68 8 chr11 79220666 79221062 -71562491 + L1MB5 LINE L1 5643 6062 -112 641 148 0 0 chr11 79221063 79221164 -71562389 + FLAM_C SINE Alu 5 105 -38 763 85 0 0 chr11 79221275 79221381 -71562172 + L1MB5 LINE L1 6061 6166 -8 2566 206 42 2 chr11 79221653 79222206 -71561347 + L1MC3 LINE L1 7204 7778 -7 24 0 0 0 chr11 79222214 79222238 -71561315 + AT_rich Low_complexity Low_complexity 1 24 0 2180 119 7 0 chr11 79222530 79222823 -71560730 + AluSx SINE Alu 1 295 -17 330 262 159 8 chr11 79223155 79223281 -71560272 + MIR SINE MIR 8 152 -110 2326 113 0 0 chr11 79223394 79223695 -71559858 + AluSx SINE Alu 7 307 -5 253 297 0 0 chr11 79224422 79224496 -71559057 - MIR SINE MIR 0 262 189 244 229 21 0 chr11 79225418 79225466 -71558087 + L2 LINE L2 3199 3247 -25 232 234 75 53 chr11 79225440 79225534 -71558019 - L2 LINE L2 -38 3234 3139 * 239 284 27 0 chr11 79226842 79226916 -71556637 + L2 LINE L2 3122 3197 -75 747 194 63 11 chr11 79227462 79227637 -71555916 - MER53 DNA DNA -5 184 1 234 296 0 45 chr11 79227736 79227824 -71555729 - MIR3 SINE MIR -13 195 112 2396 101 0 3 chr11 79228264 79228571 -71554982 + AluSx SINE Alu 1 306 -6 219 220 17 136 chr11 79228681 79228799 -71554754 + MIR3 SINE MIR 103 206 -2 1071 192 50 29 chr11 79228816 79229056 -71554497 - MIR SINE MIR 0 262 18 461 200 80 0 chr11 79229100 79229200 -71554353 - MIR SINE MIR -79 183 76 186 311 0 0 chr11 79229253 79229298 -71554255 + MIR SINE MIR 211 255 -7 760 275 63 39 chr11 79229454 79229818 -71553735 - L2 LINE L2 -20 3293 2921 602 256 29 33 chr11 79230206 79230618 -71552935 + L1ME3A LINE L1 5074 5486 -747 451 186 157 0 chr11 79230635 79230737 -71552816 - MER3 DNA MER1_type -78 131 14 302 299 131 0 chr11 79230959 79231096 -71552457 + L1ME3A LINE L1 5559 5713 -457 2280 94 3 0 chr11 79231099 79231413 -71552140 - AluSx SINE Alu 0 312 6 691 198 119 11 chr11 79231699 79231876 -71551677 + MER3 DNA MER1_type 14 209 0 2283 86 7 0 chr11 79232044 79232323 -71551230 - AluSc SINE Alu -12 297 17 270 243 62 7 chr11 79232349 79232493 -71551060 + L1ME3A LINE L1 5781 5932 -238 321 286 91 57 chr11 79233144 79233591 -71549962 - L2 LINE L2 -264 3008 2537 1781 138 0 67 chr11 79233591 79233903 -71549650 - AluJb SINE Alu -21 291 1 321 286 91 57 chr11 79233903 79233976 -71549577 - L2 LINE L2 -735 2537 2468 663 242 139 4 chr11 79233978 79234291 -71549262 - LTR16C LTR ERVL -2 489 97 2228 124 0 3 chr11 79235655 79235961 -71547592 - AluSg SINE Alu -5 305 1 250 327 37 9 chr11 79235963 79236070 -71547483 + L3 LINE CR1 968 1077 -500 2193 94 0 27 chr11 79236157 79236478 -71547075 + AluSq SINE Alu 1 313 0 260 167 74 0 chr11 79236687 79236741 -71546812 + L1ME LINE L1 5725 5782 -339 1543 128 82 64 chr11 79236796 79236929 -71546624 + AluJo SINE Alu 1 130 -182 2068 123 3 22 chr11 79236929 79237245 -71546308 + AluSg SINE Alu 1 310 0 1543 128 82 64 chr11 79237245 79237392 -71546161 + AluJo SINE Alu 130 286 -26 2144 146 0 3 chr11 79237804 79238106 -71545447 - AluSx SINE Alu -11 301 1 2210 118 0 13 chr11 79238261 79238566 -71544987 - AluSx SINE Alu -8 304 4 1493 181 65 4 chr11 79238567 79238844 -71544709 - AluJo SINE Alu -12 300 7 403 338 69 28 chr11 79239098 79239388 -71544165 + L2 LINE L2 2970 3271 -1 180 0 0 0 chr11 79240989 79241009 -71542544 + (T)n Simple_repeat Simple_repeat 1 20 0 2363 110 10 0 chr11 79241017 79241327 -71542226 - AluSq SINE Alu 0 313 1 293 207 0 0 chr11 79241468 79241526 -71542027 - MIR SINE MIR -66 142 85 284 239 15 15 chr11 79241802 79241869 -71541684 + L2 LINE L2 3246 3312 -1 229 254 0 15 chr11 79242635 79242702 -71540851 - MLT1J LTR MaLR -13 498 433 380 194 42 160 chr11 79242720 79242761 -71540792 - MIR SINE MIR -130 132 88 2236 115 3 3 chr11 79242761 79243066 -71540487 + AluSq SINE Alu 1 305 -8 2270 109 3 10 chr11 79243068 79243379 -71540174 + AluSc SINE Alu 1 309 0 380 194 42 160 chr11 79243379 79243478 -71540075 - MIR SINE MIR -175 87 6 315 146 0 0 chr11 79244290 79244345 -71539208 + (T)n Simple_repeat Simple_repeat 1 55 0 257 319 32 43 chr11 79244675 79244863 -71538690 + L3 LINE CR1 1278 1463 -114 1147 128 43 0 chr11 79246156 79246344 -71537209 - AluSg/x SINE Alu -32 278 83 626 260 125 0 chr11 79246440 79246640 -71536913 + L1ME3A LINE L1 5941 6165 -5 418 187 215 0 chr11 79246645 79246752 -71536801 - MER5B DNA MER1_type -48 130 1 521 278 15 8 chr11 79247282 79247415 -71536138 - MIR SINE MIR -109 153 20 227 234 62 0 chr11 79247993 79248057 -71535496 + MER5A DNA MER1_type 44 111 -78 286 192 154 0 chr11 79248152 79248230 -71535323 - MIR3 SINE MIR -50 158 69 194 61 0 30 chr11 79248482 79248515 -71535038 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 2316 92 0 7 chr11 79250400 79250695 -71532858 - AluSq SINE Alu -20 293 1 2041 127 0 23 chr11 79250698 79251005 -71532548 - AluJb SINE Alu -11 301 2 198 0 0 0 chr11 79251311 79251333 -71532220 + (CA)n Simple_repeat Simple_repeat 1 22 0 420 272 129 0 chr11 79252280 79252427 -71531126 - MIR3 SINE MIR -7 201 36 223 338 0 0 chr11 79253074 79253145 -71530408 - MIR SINE MIR -108 154 84 343 293 55 18 chr11 79253348 79253512 -71530041 - MIR3 SINE MIR -8 200 31 440 200 12 0 chr11 79254983 79255063 -71528490 - AluJ/FLAM SINE Alu -226 86 6 406 213 0 0 chr11 79257800 79257880 -71525673 + MLT1A1 LTR MaLR 1 80 -285 2047 114 3 39 chr11 79257888 79258196 -71525357 + AluSc SINE Alu 6 302 -7 983 219 102 4 chr11 79258334 79258599 -71524954 + MLT1A1 LTR MaLR 72 362 -3 192 254 45 36 chr11 79259813 79259923 -71523630 - MIR SINE MIR -55 153 43 231 36 0 0 chr11 79260395 79260423 -71523130 + (GGGTG)n Simple_repeat Simple_repeat 3 30 0 268 286 84 51 chr11 79261589 79261767 -71521786 + L2 LINE L2 2872 3055 -217 242 352 0 33 chr11 79261961 79262052 -71521501 + MIR SINE MIR 33 120 -88 2425 84 0 7 chr11 79262057 79262355 -71521198 - AluSg SINE Alu -14 296 1 475 313 154 0 chr11 79263096 79263297 -71520256 + MIR SINE MIR 2 233 -29 243 229 76 76 chr11 79264086 79264217 -71519336 + L2 LINE L2 3141 3271 -1 529 249 48 18 chr11 79264272 79264437 -71519116 - L2 LINE L2 -3 3310 3141 2227 116 0 3 chr11 79264457 79264749 -71518804 - AluSx SINE Alu -21 291 1 659 120 9 3 chr11 79266147 79266370 -71517183 + AluJb SINE Alu 1 284 -28 255 331 81 27 chr11 79266398 79266546 -71517007 + MIR3 SINE MIR 22 177 -31 249 215 54 43 chr11 79266914 79267007 -71516546 - MIR3 SINE MIR -4 204 111 2322 94 0 26 chr11 79267322 79267630 -71515923 + AluSx SINE Alu 1 300 -12 348 224 0 0 chr11 79268245 79268343 -71515210 + MIR SINE MIR 20 118 -90 2510 85 0 0 chr11 79269328 79269633 -71513920 - AluSq SINE Alu -8 305 1 333 260 133 46 chr11 79269694 79269811 -71513742 + L1M4 LINE L1 4903 5008 -1138 1657 167 68 10 chr11 79269811 79270105 -71513448 + AluJo SINE Alu 1 311 -1 333 260 133 46 chr11 79270105 79270444 -71513109 + L1M4 LINE L1 5008 5399 -747 2306 99 3 3 chr11 79270510 79270803 -71512750 - AluSc SINE Alu -16 293 1 3275 229 72 17 chr11 79270864 79271566 -71511987 - L1M4 LINE L1 -2393 3753 2963 2647 61 0 3 chr11 79271566 79271876 -71511677 - AluY SINE Alu -2 309 1 3275 229 72 17 chr11 79271876 79272306 -71511247 - L1M4 LINE L1 -3183 2963 2558 189 0 0 0 chr11 79272456 79272477 -71511076 + (A)n Simple_repeat Simple_repeat 1 21 0 430 375 69 22 chr11 79273507 79274023 -71509530 + L2 LINE L2 2507 3055 -217 426 39 0 0 chr11 79274207 79274259 -71509294 + (ATG)n Simple_repeat Simple_repeat 3 54 0 385 302 79 0 chr11 79274449 79274588 -71508965 + L3 LINE CR1 1177 1326 -251 527 131 0 24 chr11 79274588 79274672 -71508881 - AluSp/q SINE Alu -54 259 178 208 366 42 7 chr11 79274676 79274818 -71508735 + L3 LINE CR1 1306 1452 -125 945 124 0 0 chr11 79274827 79274956 -71508597 + AluSg/x SINE Alu 173 301 -9 2229 102 7 3 chr11 79274960 79275254 -71508299 + AluSg SINE Alu 1 295 -15 367 288 25 25 chr11 79275254 79275372 -71508181 + L3 LINE CR1 1452 1569 -8 250 289 233 0 chr11 79275613 79275772 -71507781 + MIR SINE MIR 49 244 -18 304 296 98 23 chr11 79276377 79276509 -71507044 + MIR SINE MIR 50 147 -61 467 200 0 0 chr11 79276613 79276688 -71506865 - AluJ/FLAM SINE Alu -236 76 2 180 77 0 0 chr11 79276748 79276774 -71506779 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 * 271 149 0 30 chr11 79276772 79276839 -71506714 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 256 282 51 0 chr11 79277355 79277433 -71506120 + L1ME LINE L1 5502 5583 -538 1531 265 59 23 chr11 79277457 79278191 -71505362 + L2 LINE L2 2551 3312 -1 2319 113 0 0 chr11 79278211 79278512 -71505041 + AluSc SINE Alu 1 301 -8 480 35 0 0 chr11 79278732 79278790 -71504763 + (TG)n Simple_repeat Simple_repeat 1 58 0 3892 178 27 57 chr11 79278793 79278804 -71504749 - L1MB3 LINE L1 -16 6167 6157 2579 53 0 25 chr11 79278804 79279123 -71504430 + AluY SINE Alu 1 311 0 3892 178 27 57 chr11 79279123 79279241 -71504312 - L1MB3 LINE L1 -26 6157 6037 531 104 13 0 chr11 79279241 79279318 -71504235 - MADE1 DNA Mariner -2 78 1 3892 178 27 57 chr11 79279318 79280080 -71503473 - L1MB3 LINE L1 -146 6037 5302 404 20 0 20 chr11 79280113 79280164 -71503389 - L1P3 LINE L1 -4734 1141 1092 1600 55 0 0 chr11 79280306 79280512 -71503041 - AluY SINE Alu 0 310 105 2046 109 10 20 chr11 79280635 79280929 -71502624 - AluSx SINE Alu -5 307 17 511 308 88 0 chr11 79281339 79281498 -71502055 + MIR3 SINE MIR 31 203 -5 211 221 29 29 chr11 79281508 79281576 -71501977 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 211 286 124 19 chr11 79281581 79281686 -71501867 - L2 LINE L2 -38 3234 3119 1906 150 3 16 chr11 79281947 79282253 -71501300 + AluJb SINE Alu 1 302 -10 1904 140 30 30 chr11 79282475 79282847 -71500706 - L1PA16 LINE L1 -1 6165 5794 1713 131 47 18 chr11 79283004 79283299 -71500254 - AluJb SINE Alu 0 303 1 200 346 0 37 chr11 79284049 79284156 -71499397 + MIR SINE MIR 47 149 -113 212 252 207 18 chr11 79284170 79284281 -71499272 - L2 LINE L2 0 3272 3141 5498 247 133 71 chr11 79284725 79285855 -71497698 - L2 LINE L2 -37 3276 2217 1573 178 30 34 chr11 79285855 79286153 -71497400 + AluJb SINE Alu 2 298 -14 5498 247 133 71 chr11 79286153 79286483 -71497070 - L2 LINE L2 -1096 2217 1909 2085 122 27 7 chr11 79286483 79286779 -71496774 + AluSg SINE Alu 1 302 -8 5498 247 133 71 chr11 79286779 79287233 -71496320 - L2 LINE L2 -1404 1909 1484 2214 137 0 0 chr11 79287233 79287532 -71496021 + AluSx SINE Alu 1 299 -13 5498 247 133 71 chr11 79287532 79288540 -71495013 - L2 LINE L2 -1829 1484 166 1791 134 32 23 chr11 79289137 79289481 -71494072 + L1MB3 LINE L1 5836 6182 -1 2787 109 43 0 chr11 79290530 79290925 -71492628 + MLT2A2 LTR ERVL 2 413 -40 632 123 0 43 chr11 79290931 79291118 -71492435 + (TA)n Simple_repeat Simple_repeat 1 179 0 263 220 0 0 chr11 79291140 79291199 -71492354 + LTR66 LTR ERVL 399 457 -153 * 286 81 0 129 chr11 79291171 79291233 -71492320 + MLT2A2 LTR ERVL 391 453 0 187 343 15 0 chr11 79291531 79291598 -71491955 + L2 LINE L2 3200 3267 -5 338 241 187 24 chr11 79292480 79292646 -71490907 - MIR SINE MIR -1 261 69 2227 94 0 3 chr11 79292678 79292966 -71490587 + AluSx SINE Alu 26 312 0 245 270 0 63 chr11 79293379 79293490 -71490063 + MIR SINE MIR 38 141 -67 189 0 0 0 chr11 79293490 79293511 -71490042 + (A)n Simple_repeat Simple_repeat 1 21 0 1319 162 35 125 chr11 79293524 79293925 -71489628 - MLT1A1 LTR MaLR 0 365 1 252 213 117 21 chr11 79294296 79294390 -71489163 - L2 LINE L2 -33 3280 3178 762 188 0 15 chr11 79294475 79294608 -71488945 + FLAM_A SINE Alu 1 131 -2 209 235 39 0 chr11 79294696 79294747 -71488806 - L2 LINE L2 -363 2950 2898 301 257 56 21 chr11 79294844 79294951 -71488602 + MIR SINE MIR 1 113 -95 234 0 0 0 chr11 79294967 79294993 -71488560 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 180 111 0 0 chr11 79295830 79295857 -71487696 + (TCCA)n Simple_repeat Simple_repeat 3 29 0 292 284 75 15 chr11 79295860 79295994 -71487559 - L2 LINE L2 -10 3303 3162 963 239 76 69 chr11 79296328 79296734 -71486819 - MLT1J LTR MaLR -3 508 100 230 276 104 75 chr11 79296866 79297000 -71486553 + L2 LINE L2 3133 3270 -2 1542 203 75 12 chr11 79297054 79297454 -71486099 - L1MB8 LINE L1 -1 6177 5753 * 2016 248 85 57 chr11 79297435 79297716 -71485837 - L1M4c LINE L1 -4313 2825 2553 450 0 0 0 chr11 79297716 79297766 -71485787 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2016 248 85 57 chr11 79297766 79298298 -71485255 - L1M4c LINE L1 -4585 2553 2037 1973 155 30 47 chr11 79298298 79298705 -71484848 - L1PA15 LINE L1 0 6165 5766 2016 248 85 57 chr11 79298705 79299337 -71484216 - L1M4c LINE L1 -5101 2037 1195 25 31 0 0 chr11 79299340 79299372 -71484181 + AT_rich Low_complexity Low_complexity 1 32 0 307 278 157 30 chr11 79299804 79300114 -71483439 - L1M4c LINE L1 -6196 659 11 490 248 189 0 chr11 79300896 79301049 -71482504 - L2 LINE L2 -5 3308 3127 668 205 0 8 chr11 79301052 79301179 -71482374 + MSTD LTR MaLR 6 131 -297 905 177 0 0 chr11 79301217 79301358 -71482195 + FAM SINE Alu 32 172 -13 1063 129 71 0 chr11 79301389 79301559 -71481994 + MSTD LTR MaLR 215 396 0 2338 100 13 0 chr11 79301578 79301877 -71481676 + AluSx SINE Alu 1 303 -9 1064 245 7 22 chr11 79301913 79302186 -71481367 - L2 LINE L2 -241 3072 2804 557 304 62 21 chr11 79302384 79302624 -71480929 + MIR SINE MIR 7 256 -6 1850 282 77 9 chr11 79302773 79303498 -71480055 + L2 LINE L2 2324 3096 -217 1414 153 176 30 chr11 79303527 79303822 -71479731 - MER1B DNA MER1_type -1 338 1 197 303 66 13 chr11 79303994 79304070 -71479483 + MER5A DNA MER1_type 12 91 -98 691 210 25 12 chr11 79304144 79304306 -71479247 + L1ME1 LINE L1 5998 6161 -5 320 279 39 31 chr11 79304349 79304478 -71479075 - MIR SINE MIR -113 149 20 2076 168 18 25 chr11 79304892 79305291 -71478262 - MSTD LTR MaLR 0 396 1 2322 91 3 3 chr11 79305481 79305788 -71477765 + AluSg SINE Alu 1 307 -3 180 229 12 108 chr11 79305875 79305958 -71477595 - L3 LINE CR1 -170 1407 1333 408 273 66 0 chr11 79306795 79306916 -71476637 - MIR3 SINE MIR -17 191 63 261 258 0 0 chr11 79306966 79307032 -71476521 + MIR SINE MIR 86 151 -111 344 246 79 18 chr11 79308270 79308384 -71475169 + MIR SINE MIR 48 168 -94 199 259 19 0 chr11 79308402 79308456 -71475097 + MIR SINE MIR 143 197 -65 1188 295 68 36 chr11 79308463 79309069 -71474484 - L1MEd LINE L1 -5490 629 5 219 69 0 0 chr11 79309700 79309729 -71473824 + (TC)n Simple_repeat Simple_repeat 2 30 0 926 173 73 8 chr11 79309917 79310226 -71473327 + MLT1A2 LTR MaLR 1 374 0 440 304 85 18 chr11 79310442 79310666 -71472887 + MIR SINE MIR 23 261 -1 288 288 22 92 chr11 79310696 79310880 -71472673 + MIR SINE MIR 20 190 -72 290 286 165 62 chr11 79311862 79312358 -71471195 + L2 LINE L2 1932 2478 -836 1937 150 7 0 chr11 79312428 79312722 -71470831 + AluSx SINE Alu 1 296 -16 431 62 46 0 chr11 79312750 79312815 -71470738 + CT-rich Low_complexity Low_complexity 1 68 0 1742 150 52 0 chr11 79312815 79313101 -71470452 - AluSx SINE Alu -11 301 1 3493 170 43 21 chr11 79313101 79313782 -71469771 - L1MB3 LINE L1 -42 6141 5446 309 319 76 50 chr11 79313821 79314059 -71469494 + L2 LINE L2 2544 2787 -527 215 250 88 15 chr11 79314173 79314241 -71469312 - MIR3 SINE MIR -21 187 115 1834 163 0 10 chr11 79314277 79314572 -71468981 + AluJo SINE Alu 1 292 -20 216 233 17 17 chr11 79314683 79314743 -71468810 - MIR3 SINE MIR -135 73 14 2417 102 0 3 chr11 79314891 79315196 -71468357 + AluSx SINE Alu 1 304 -8 353 183 15 2 chr11 79315207 79315287 -71468266 + L2 LINE L2 3194 3258 -14 2509 60 13 3 chr11 79315516 79315818 -71467735 + AluY SINE Alu 1 305 -6 226 171 0 0 chr11 79316140 79316175 -71467378 + AluJb SINE Alu 82 116 -17 1675 83 9 13 chr11 79316180 79316410 -71467143 - AluY SINE Alu 0 311 83 1314 157 0 14 chr11 79316410 79316620 -71466933 + AluJb SINE Alu 102 308 -4 250 106 0 188 chr11 79316737 79316786 -71466767 - MIR SINE MIR -70 192 164 2238 85 0 23 chr11 79316786 79317093 -71466460 + AluSg SINE Alu 1 300 -10 250 106 0 188 chr11 79317093 79317128 -71466425 - MIR SINE MIR -98 164 124 239 125 0 0 chr11 79317317 79317357 -71466196 - tRNA-Ala-GCG tRNA tRNA -35 40 1 220 271 129 0 chr11 79317513 79317583 -71465970 + L2 LINE L2 3122 3200 -72 24 77 0 0 chr11 79317604 79317656 -71465897 + AT_rich Low_complexity Low_complexity 1 52 0 356 271 93 14 chr11 79317702 79317842 -71465711 - MIR SINE MIR -45 217 67 255 173 0 0 chr11 79317874 79317926 -71465627 - L1MB4 LINE L1 -3 6177 6126 866 184 89 6 chr11 79317943 79318111 -71465442 - FRAM SINE Alu -1 175 1 1242 112 61 51 chr11 79318111 79318279 -71465274 - L1MB4 LINE L1 -45 6135 5963 1316 217 35 54 chr11 79318279 79318593 -71464960 - AluJo SINE Alu -4 308 1 1242 112 61 51 chr11 79318593 79318678 -71464875 - L1MB4 LINE L1 -217 5963 5880 760 239 203 17 chr11 79318717 79319018 -71464535 - L1M4c LINE L1 -5973 411 55 335 278 87 0 chr11 79319558 79319673 -71463880 - MIR SINE MIR -54 208 84 1955 183 93 143 chr11 79320281 79321198 -71462355 - LTR28 LTR ERV1 -5 1015 1 242 338 52 26 chr11 79321256 79321410 -71462143 + MIR3 SINE MIR 36 193 -15 326 282 88 33 chr11 79321935 79322116 -71461437 + MIR SINE MIR 7 197 -65 25 31 0 0 chr11 79322863 79322895 -71460658 + AT_rich Low_complexity Low_complexity 1 32 0 230 319 80 14 chr11 79323698 79323836 -71459717 - MIR SINE MIR -111 151 5 1787 129 92 6 chr11 79323847 79324156 -71459397 - MER7A DNA MER2_type 0 346 1 257 260 14 27 chr11 79324216 79324289 -71459264 + L2 LINE L2 3242 3313 0 589 235 118 20 chr11 79325205 79325358 -71458195 + MER5A DNA MER1_type 1 168 -21 1814 135 40 20 chr11 79326431 79326727 -71456826 + AluJo SINE Alu 1 302 -10 474 247 117 92 chr11 79326755 79327124 -71456429 - MLT1J LTR MaLR -35 476 99 440 254 60 15 chr11 79327221 79327355 -71456198 + MIR SINE MIR 94 233 -29 2186 108 0 0 chr11 79327355 79327657 -71455896 + AluSc SINE Alu 1 302 0 291 325 57 0 chr11 79327727 79327850 -71455703 - MIR SINE MIR -109 153 24 1931 151 0 29 chr11 79328122 79328433 -71455120 - AluJo SINE Alu -9 303 2 247 302 151 19 chr11 79328740 79328998 -71454555 - L2 LINE L2 -510 2804 2513 203 185 74 37 chr11 79328991 79329045 -71454508 + L2 LINE L2 3258 3313 0 * 277 241 7 68 chr11 79329310 79329398 -71454155 - MIR SINE MIR -68 140 60 306 233 144 0 chr11 79329712 79329802 -71453751 + MIR SINE MIR 38 140 -122 188 228 15 117 chr11 79329831 79329926 -71453627 - MIR SINE MIR -66 142 67 773 123 39 15 chr11 79330135 79330265 -71453288 + FLAM_C SINE Alu 1 133 0 1253 113 0 0 chr11 79330402 79330570 -71452983 - AluY SINE Alu -143 168 1 1571 174 3 59 chr11 79330574 79330895 -71452658 - AluJo SINE Alu -9 303 1 1879 104 32 81 chr11 79331842 79332151 -71451402 - AluSx SINE Alu -18 294 1 390 338 73 10 chr11 79333300 79333779 -71449774 - L2 LINE L2 -469 2845 2337 2413 99 0 0 chr11 79334931 79335235 -71448318 - AluSx SINE Alu -8 304 1 205 296 0 45 chr11 79335674 79335762 -71447791 + MIR3 SINE MIR 112 195 -13 768 200 63 11 chr11 79335861 79336036 -71447517 + MER53 DNA DNA 1 184 -5 221 206 79 0 chr11 79336579 79336642 -71446911 - L2 LINE L2 -69 3203 3136 212 245 75 53 chr11 79337965 79338059 -71445494 + L2 LINE L2 3139 3234 -38 * 244 229 21 0 chr11 79338033 79338081 -71445472 - L2 LINE L2 -25 3247 3199 252 297 0 0 chr11 79339003 79339077 -71444476 + MIR SINE MIR 189 262 0 2337 88 0 7 chr11 79339803 79340108 -71443445 - AluSg SINE Alu -7 303 1 513 313 154 0 chr11 79340849 79341050 -71442503 + MIR SINE MIR 2 233 -29 275 237 76 76 chr11 79341838 79341969 -71441584 + L2 LINE L2 3141 3271 -1 509 268 16 68 chr11 79342024 79342184 -71441369 - L2 LINE L2 -3 3310 3143 423 204 191 13 chr11 79342184 79342209 -71441344 - MER104 DNA MER2_type -1719 179 160 2125 116 0 3 chr11 79342209 79342501 -71441052 - AluSx SINE Alu -21 291 1 423 204 191 13 chr11 79342501 79342627 -71440926 - MER104 DNA MER2_type -1738 160 1 509 268 16 68 chr11 79342627 79342659 -71440894 - L2 LINE L2 -170 3143 3111 1786 107 4 8 chr11 79342659 79342920 -71440633 + AluSx SINE Alu 1 260 -52 509 268 16 68 chr11 79342920 79342976 -71440577 - L2 LINE L2 -202 3111 3074 481 218 73 73 chr11 79343986 79344053 -71439500 + MIR SINE MIR 12 78 -184 807 253 110 17 chr11 79344053 79344290 -71439263 + MIR SINE MIR 2 260 -2 481 218 73 73 chr11 79344290 79344401 -71439152 + MIR SINE MIR 77 190 -72 645 265 77 5 chr11 79344428 79344624 -71438929 - MIR SINE MIR -37 225 16 2088 102 0 3 chr11 79344896 79345209 -71438344 - AluSx SINE Alu 0 312 1 240 275 125 25 chr11 79345231 79345351 -71438202 - MIR SINE MIR -97 165 34 466 293 49 5 chr11 79345500 79345705 -71437848 + L2 LINE L2 2871 3084 -188 1533 141 95 43 chr11 79345756 79346126 -71437427 - L1MB3 LINE L1 -9 6174 5786 315 288 124 20 chr11 79346159 79346312 -71437241 + L2 LINE L2 3104 3272 0 207 364 13 0 chr11 79346759 79346836 -71436717 + L2 LINE L2 2680 2757 -557 420 258 204 5 chr11 79347037 79347223 -71436330 + L2 LINE L2 3028 3250 -22 343 307 73 7 chr11 79348109 79348259 -71435294 - MIR SINE MIR -85 177 18 431 252 76 0 chr11 79348260 79348391 -71435162 - MIR SINE MIR -10 252 112 471 277 40 37 chr11 79349479 79349684 -71433869 - MIR SINE MIR -25 237 33 288 285 77 2 chr11 79349712 79349828 -71433725 + MIR SINE MIR 28 152 -62 441 297 105 18 chr11 79352157 79352307 -71431246 + L2 LINE L2 2838 3014 -258 2182 63 3 70 chr11 79352307 79352623 -71430930 + AluSp SINE Alu 1 295 -18 441 297 105 18 chr11 79352623 79352691 -71430862 + L2 LINE L2 3014 3075 -197 180 190 20 50 chr11 79354469 79354569 -71428984 + (TGAA)n Simple_repeat Simple_repeat 1 97 0 349 306 119 12 chr11 79354627 79354787 -71428766 - L2 LINE L2 -1 3312 3136 501 279 130 23 chr11 79354938 79355153 -71428400 - MIR SINE MIR -7 255 18 527 305 0 0 chr11 79355562 79355690 -71427863 + MIR SINE MIR 9 136 -126 201 291 18 0 chr11 79355708 79355763 -71427790 + C-rich Low_complexity Low_complexity 5 60 0 1580 141 0 4 chr11 79356199 79356433 -71427120 + AluJb SINE Alu 1 233 -79 1524 229 59 5 chr11 79356453 79356494 -71427059 + MLT1G1 LTR MaLR 4 41 -554 1776 125 78 0 chr11 79356494 79356775 -71426778 - AluJo SINE Alu -9 303 1 1524 229 59 5 chr11 79356775 79357122 -71426431 + MLT1G1 LTR MaLR 41 413 -182 304 205 60 0 chr11 79357166 79357249 -71426304 - MIR SINE MIR -128 134 47 771 243 57 0 chr11 79357590 79357767 -71425786 - MIR SINE MIR -38 224 38 322 259 9 69 chr11 79358007 79358123 -71425430 + MIR3 SINE MIR 73 181 -27 215 375 102 0 chr11 79359480 79359656 -71423897 + L2 LINE L2 2866 3059 -213 290 267 42 67 chr11 79359819 79359939 -71423614 + L2 LINE L2 3155 3271 -1 207 232 80 98 chr11 79360037 79360149 -71423404 - MIR SINE MIR -65 143 34 295 308 0 0 chr11 79360897 79360975 -71422578 + MIR SINE MIR 46 123 -139 477 229 63 86 chr11 79361010 79361185 -71422368 - MIR SINE MIR -10 252 82 513 0 0 0 chr11 79361510 79361567 -71421986 + (CA)n Simple_repeat Simple_repeat 2 58 0 306 301 158 14 chr11 79361694 79361840 -71421713 + L1MC4a LINE L1 5825 5991 -1817 35 0 0 0 chr11 79361956 79361991 -71421562 + AT_rich Low_complexity Low_complexity 1 35 0 183 306 153 0 chr11 79362566 79362651 -71420902 + MIR3 SINE MIR 76 173 -35 375 272 24 24 chr11 79362976 79363101 -71420452 - MIR SINE MIR -59 203 79 181 269 97 21 chr11 79363108 79363201 -71420352 - MIR SINE MIR -156 106 7 276 332 85 30 chr11 79363209 79363439 -71420114 + L2 LINE L2 2767 3010 -262 2014 92 3 54 chr11 79364263 79364578 -71418975 - AluSq SINE Alu 0 313 15 265 330 126 0 chr11 79364669 79364860 -71418693 + L2 LINE L2 2885 3099 -173 230 200 0 0 chr11 79366156 79366201 -71417352 - L2 LINE L2 -7 3306 3262 235 267 0 0 chr11 79366330 79366375 -71417178 + MIR SINE MIR 23 67 -195 204 301 21 21 chr11 79366375 79366468 -71417085 + MIR SINE MIR 37 129 -133 208 307 0 45 chr11 79366996 79367084 -71416469 + GA-rich Low_complexity Low_complexity 3 86 0 213 267 225 0 chr11 79367697 79367817 -71415736 - MIR3 SINE MIR -61 147 1 343 198 76 102 chr11 79368516 79368675 -71414878 + MIR3 SINE MIR 45 199 -9 403 274 108 52 chr11 79369367 79369579 -71413974 - MIR SINE MIR -11 251 28 220 158 0 0 chr11 79369986 79370024 -71413529 - MIR SINE MIR -10 252 215 1675 164 14 7 chr11 79370052 79370339 -71413214 + AluJb SINE Alu 1 289 -23 205 150 0 0 chr11 79370446 79370471 -71413082 + (A)n Simple_repeat Simple_repeat 1 28 -12 1870 80 53 40 chr11 79370471 79370770 -71412783 - AluSg SINE Alu -7 303 1 205 150 0 0 chr11 79370770 79370784 -71412769 + (A)n Simple_repeat Simple_repeat 27 40 0 226 247 227 21 chr11 79371343 79371440 -71412113 + L2 LINE L2 3156 3272 0 1859 206 82 21 chr11 79371570 79371763 -71411790 + MLT1D LTR MaLR 1 181 -324 2401 70 0 3 chr11 79371763 79372063 -71411490 + AluSc SINE Alu 1 299 -10 1859 206 82 21 chr11 79372063 79372345 -71411208 + MLT1D LTR MaLR 181 505 0 1872 151 23 0 chr11 79372466 79372771 -71410782 - AluJo SINE Alu 0 312 1 204 321 107 0 chr11 79373105 79373189 -71410364 - MIR SINE MIR -84 124 32 261 291 147 0 chr11 79373652 79373797 -71409756 + MIR SINE MIR 24 192 -70 261 250 39 87 chr11 79373799 79373903 -71409650 + L3 LINE CR1 1408 1506 -71 1176 245 146 8 chr11 79374167 79374850 -71408703 + L2 LINE L2 2556 3313 0 224 348 167 7 chr11 79374904 79375042 -71408511 + L2 LINE L2 2904 3063 -209 263 260 7 103 chr11 79375694 79375840 -71407713 + MIR3 SINE MIR 3 134 -74 274 191 0 0 chr11 79376084 79376131 -71407422 + MIR SINE MIR 216 262 0 343 290 92 8 chr11 79376589 79376720 -71406833 - MIR3 SINE MIR -34 174 33 273 330 45 0 chr11 79377280 79377392 -71406161 - MIR3 SINE MIR -52 156 40 236 328 156 0 chr11 79378613 79378735 -71404818 - MIR3 SINE MIR -25 183 43 971 196 0 0 chr11 79381904 79382086 -71401467 + AluJo SINE Alu 120 304 -8 1684 118 115 11 chr11 79382086 79382365 -71401188 - AluSc SINE Alu -1 308 1 4114 154 45 10 chr11 79382381 79382532 -71401021 + L1MB4 LINE L1 5320 5464 -716 225 0 0 0 chr11 79382532 79382557 -71400996 + (TAA)n Simple_repeat Simple_repeat 3 27 0 4114 154 45 10 chr11 79382557 79383237 -71400316 + L1MB4 LINE L1 5464 6180 0 859 257 40 10 chr11 79383274 79383476 -71400077 - MER63A DNA MER1_type -2 208 1 2083 108 0 0 chr11 79383656 79383934 -71399619 - AluSg SINE Alu -32 278 1 266 0 29 0 chr11 79384156 79384190 -71399363 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 361 24 0 141 chr11 79384664 79384749 -71398804 + (CA)n Simple_repeat Simple_repeat 2 74 0 426 279 0 10 chr11 79384966 79385070 -71398483 + MIR SINE MIR 20 122 -140 200 272 92 65 chr11 79385273 79385490 -71398063 - L2 LINE L2 -190 3082 2860 480 307 68 34 chr11 79385586 79385762 -71397791 - MIR3 SINE MIR -10 198 17 318 330 62 0 chr11 79385817 79385929 -71397624 + MIR SINE MIR 21 139 -69 432 366 115 39 chr11 79386450 79387147 -71396406 - L2 LINE L2 -1347 1967 1218 616 284 12 0 chr11 79387262 79387431 -71396122 - MIR SINE MIR -3 259 89 2253 89 0 3 chr11 79387706 79388009 -71395544 + AluY SINE Alu 1 302 -9 279 370 11 0 chr11 79388161 79388253 -71395300 + MIR SINE MIR 21 113 -95 316 91 0 78 chr11 79388262 79388339 -71395214 + (CA)n Simple_repeat Simple_repeat 2 72 0 223 327 53 18 chr11 79388879 79388992 -71394561 - MIR SINE MIR -50 212 96 359 281 107 71 chr11 79389008 79389148 -71394405 - MIR SINE MIR -40 222 72 1471 163 4 23 chr11 79389148 79389405 -71394148 + AluJo SINE Alu 38 289 -23 359 281 107 71 chr11 79389405 79389460 -71394093 - MIR SINE MIR -190 72 20 249 260 149 52 chr11 79390788 79390942 -71392611 + MIR3 SINE MIR 39 207 -1 400 351 69 47 chr11 79391134 79391784 -71391769 - L2 LINE L2 -38 3234 2571 609 258 0 38 chr11 79391855 79392014 -71391539 - MIR SINE MIR -74 188 36 448 231 0 54 chr11 79392210 79392340 -71391213 - L1ME3 LINE L1 -3 6159 6037 185 386 16 8 chr11 79392854 79392981 -71390572 + L2 LINE L2 3143 3270 -2 1312 137 42 9 chr11 79395472 79395684 -71387869 - MER20 DNA MER1_type 0 219 1 341 251 59 79 chr11 79395836 79395886 -71387667 + L3 LINE CR1 1302 1351 -226 2480 52 0 7 chr11 79395886 79396191 -71387362 + AluY SINE Alu 1 303 -8 341 251 59 79 chr11 79396191 79396343 -71387210 + L3 LINE CR1 1351 1500 -77 2406 136 100 10 chr11 79396433 79396824 -71386729 - MSTB LTR MaLR 0 426 1 265 230 98 65 chr11 79396933 79397076 -71386477 - MIR SINE MIR -71 191 47 2400 81 0 0 chr11 79397137 79397444 -71386109 + AluY SINE Alu 1 307 -4 363 327 120 7 chr11 79397597 79397747 -71385806 + MIR3 SINE MIR 16 182 -26 248 344 123 0 chr11 79397791 79397945 -71385608 - L3 LINE CR1 -56 1521 1349 1416 170 0 4 chr11 79398042 79398283 -71385270 - AluJb SINE Alu -22 290 51 369 297 65 49 chr11 79398962 79399147 -71384406 + MIR3 SINE MIR 18 205 -3 189 258 225 34 chr11 79399426 79399515 -71384038 - MIR3 SINE MIR -7 201 96 221 231 77 0 chr11 79399663 79399741 -71383812 + MIR3 SINE MIR 120 203 -5 561 217 204 62 chr11 79400278 79400504 -71383049 - MIR SINE MIR 0 262 5 690 171 116 24 chr11 79400618 79400782 -71382771 - MER58A DNA MER1_type -1 223 45 250 232 0 14 chr11 79400845 79400914 -71382639 - MER103 DNA DNA -2 164 97 1542 185 14 3 chr11 79400923 79401210 -71382343 - AluJo SINE Alu -22 290 1 333 337 120 6 chr11 79401929 79402104 -71381449 - MIR3 SINE MIR -6 202 8 259 290 134 42 chr11 79402117 79402297 -71381256 - MIR3 SINE MIR -2 206 11 243 301 10 39 chr11 79402346 79402449 -71381104 + MIR3 SINE MIR 103 202 -6 216 213 0 0 chr11 79402956 79403017 -71380536 + GA-rich Low_complexity Low_complexity 2 62 0 359 267 114 0 chr11 79403144 79403249 -71380304 - MIR3 SINE MIR -9 199 83 574 265 20 7 chr11 79403823 79403970 -71379583 - MIR3 SINE MIR -15 193 45 215 207 17 17 chr11 79404044 79404102 -71379451 + MIR SINE MIR 63 120 -142 2161 104 3 10 chr11 79404559 79404866 -71378687 - AluSx SINE Alu -7 305 1 223 314 67 48 chr11 79405101 79405274 -71378279 - MIR SINE MIR -62 146 19 253 323 102 0 chr11 79405910 79406077 -71377476 - L2 LINE L2 -565 2749 2566 1842 163 3 7 chr11 79406195 79406496 -71377057 - AluJb SINE Alu -12 300 1 214 339 37 98 chr11 79406635 79406825 -71376728 - L2 LINE L2 -14 3258 3097 2178 99 3 0 chr11 79406825 79407119 -71376434 + AluSx SINE Alu 4 298 -14 214 339 37 98 chr11 79407119 79407276 -71376277 - L2 LINE L2 -175 3097 2932 187 343 193 0 chr11 79407708 79407874 -71375679 - MIR SINE MIR -55 207 10 219 288 0 0 chr11 79408865 79408924 -71374629 + G-rich Low_complexity Low_complexity 1 59 0 514 211 77 9 chr11 79409383 79409530 -71374023 - MIR3 SINE MIR -3 205 48 204 40 0 0 chr11 79410531 79410556 -71372997 + (TAA)n Simple_repeat Simple_repeat 2 26 0 349 254 184 9 chr11 79410901 79411015 -71372538 - MIR SINE MIR -89 173 40 334 216 36 18 chr11 79411883 79411989 -71371564 - MIR SINE MIR -28 180 71 288 0 0 0 chr11 79413880 79413912 -71369641 + (TAA)n Simple_repeat Simple_repeat 2 33 0 221 64 43 64 chr11 79414036 79414083 -71369470 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 498 297 134 17 chr11 79414482 79414714 -71368839 - MIR SINE MIR 0 262 4 1936 129 30 3 chr11 79414745 79415048 -71368505 - AluJb SINE Alu 0 312 2 1320 95 105 9 chr11 79417402 79417612 -71365941 + MER30 DNA MER1_type 1 230 0 1195 173 148 3 chr11 79417869 79418152 -71365401 + MER33 DNA MER1_type 1 324 0 212 221 26 26 chr11 79419390 79419467 -71364086 + L2 LINE L2 2986 3062 -210 198 291 68 19 chr11 79419904 79420007 -71363546 - MIR SINE MIR -92 170 63 1487 115 127 19 chr11 79423207 79423467 -71360086 - AluJo SINE Alu -24 288 1 370 308 142 0 chr11 79426642 79426811 -71356742 - L2 LINE L2 -19 3294 3102 2275 87 3 0 chr11 79427751 79428049 -71355504 + AluSg SINE Alu 4 302 -8 284 222 167 11 chr11 79428820 79428910 -71354643 + MIR SINE MIR 48 151 -57 1769 153 20 17 chr11 79428948 79429248 -71354305 - AluJo SINE Alu -11 301 1 275 267 105 29 chr11 79429351 79429456 -71354097 + L2 LINE L2 3158 3270 -43 221 256 153 29 chr11 79429993 79430130 -71353423 + L2 LINE L2 2906 3059 -213 288 250 24 12 chr11 79430431 79430515 -71353038 + MIR SINE MIR 158 242 -20 199 323 0 0 chr11 79430520 79430582 -71352971 + MIR SINE MIR 107 168 -94 287 299 94 0 chr11 79431258 79431385 -71352168 - MIR3 SINE MIR -67 141 3 192 140 23 45 chr11 79432276 79432320 -71351233 - MIR SINE MIR -68 140 102 463 302 30 7 chr11 79432836 79433004 -71350549 + MIR SINE MIR 8 172 -68 268 248 154 17 chr11 79433818 79433935 -71349618 + MIR3 SINE MIR 5 137 -71 214 273 18 0 chr11 79435422 79435477 -71348076 + MIR SINE MIR 90 145 -63 2045 129 40 6 chr11 79436514 79436862 -71346691 - MER47A DNA MER2_type 0 366 7 195 221 0 0 chr11 79437599 79437685 -71345868 + (CACCC)n Simple_repeat Simple_repeat 3 88 0 181 268 39 102 chr11 79437746 79437873 -71345680 - MIR3 SINE MIR -12 196 78 383 246 57 16 chr11 79438056 79438178 -71345375 - MIR SINE MIR -75 187 61 508 284 82 5 chr11 79438257 79438465 -71345088 + MIR SINE MIR 7 230 -32 584 105 0 0 chr11 79438518 79438618 -71344935 - AluSg/x SINE Alu 0 305 206 237 132 0 0 chr11 79439277 79439315 -71344238 + L1MA7 LINE L1 6208 6245 -46 588 148 9 28 chr11 79439315 79439423 -71344130 + FLAM_C SINE Alu 1 106 -37 251 256 51 0 chr11 79439598 79439676 -71343877 + MIR3 SINE MIR 106 187 -21 262 250 0 0 chr11 79440224 79440284 -71343269 - MIR SINE MIR -67 141 82 1113 257 152 19 chr11 79440481 79441258 -71342295 + L1MC/D LINE L1 4943 5821 -743 2312 114 3 0 chr11 79441262 79441570 -71341983 + AluSx SINE Alu 1 309 -3 439 64 0 51 chr11 79441671 79441749 -71341804 + Alu SINE Alu 236 309 0 272 191 157 56 chr11 79441754 79441843 -71341710 - MER5A DNA MER1_type -86 103 6 537 206 128 3 chr11 79442143 79442317 -71341236 - MIR SINE MIR 0 262 54 332 324 29 37 chr11 79442567 79442703 -71340850 + MIR SINE MIR 117 251 -11 238 250 36 24 chr11 79444044 79444128 -71339425 + L1MC5 LINE L1 7832 7916 -45 392 225 154 96 chr11 79444131 79444254 -71339299 + L1ME4a LINE L1 5724 5838 -283 3641 162 28 14 chr11 79444254 79444970 -71338583 - L1MB7 LINE L1 -8 6176 5451 392 225 154 96 chr11 79444970 79445202 -71338351 + L1ME4a LINE L1 5838 6100 -21 23 0 0 0 chr11 79445279 79445302 -71338251 + AT_rich Low_complexity Low_complexity 1 23 0 250 265 138 66 chr11 79445618 79445799 -71337754 + MIR SINE MIR 31 224 -38 251 328 33 0 chr11 79446505 79446627 -71336926 + L1MC4 LINE L1 7912 8037 -5 2876 161 12 48 chr11 79446699 79447502 -71336051 + L1ME1 LINE L1 5046 5825 -341 1371 183 0 115 chr11 79447510 79447859 -71335694 + L1M4 LINE L1 11 319 -6540 975 178 14 50 chr11 79447871 79448048 -71335505 + L1M4 LINE L1 5723 5977 -980 2259 126 0 0 chr11 79448048 79448349 -71335204 - AluSx SINE Alu -11 301 1 975 178 14 50 chr11 79448349 79448456 -71335097 + L1M4 LINE L1 5977 6086 -871 728 184 33 13 chr11 79448467 79448646 -71334907 + AluJb SINE Alu 137 312 0 276 248 142 66 chr11 79448729 79448920 -71334633 + L1MC4 LINE L1 7689 7913 -129 1833 137 53 11 chr11 79448920 79449205 -71334348 - AluJb SINE Alu -15 297 1 276 248 142 66 chr11 79449205 79449315 -71334238 + L1MC4 LINE L1 7913 8013 -29 2155 133 3 0 chr11 79449357 79449650 -71333903 + AluSx SINE Alu 1 294 -18 467 164 86 9 chr11 79449871 79449987 -71333566 - MIR SINE MIR -49 213 89 193 322 106 10 chr11 79450276 79450484 -71333069 + L2 LINE L2 2823 3050 -222 192 308 26 39 chr11 79452446 79452524 -71331029 + L3 LINE CR1 771 847 -730 301 113 65 0 chr11 79453138 79453200 -71330353 + GA-rich Low_complexity Low_complexity 3 68 0 478 344 78 14 chr11 79453380 79453598 -71329955 + MIR SINE MIR 20 251 -11 2248 115 3 10 chr11 79453629 79453943 -71329610 - AluSx SINE Alu 0 312 1 343 233 51 68 chr11 79453980 79454156 -71329397 + MIR3 SINE MIR 17 189 -19 218 365 51 7 chr11 79454236 79454373 -71329180 + MIR3 SINE MIR 66 208 0 325 236 42 0 chr11 79456010 79456082 -71327471 + MIR SINE MIR 117 191 -71 2234 109 0 10 chr11 79456616 79456954 -71326599 - AluSx SINE Alu 0 312 1 883 162 152 0 chr11 79457123 79457320 -71326233 - L1MD3 LINE L1 -76 7919 7693 556 255 21 0 chr11 79457831 79457972 -71325581 + MLT1K LTR MaLR 134 277 -311 207 0 0 0 chr11 79458099 79458122 -71325431 + (T)n Simple_repeat Simple_repeat 1 23 0 2353 87 3 7 chr11 79458254 79458552 -71325001 - AluSp SINE Alu -16 297 1 229 341 143 22 chr11 79459280 79459503 -71324050 - MIR SINE MIR -7 255 6 340 297 18 6 chr11 79459721 79459852 -71323701 - MIR SINE MIR -67 141 32 243 301 121 45 chr11 79460049 79460248 -71323305 + L2 LINE L2 3095 3308 -5 1021 182 66 0 chr11 79460658 79460856 -71322697 - MLT2B1 LTR ERVL -309 211 1 1793 154 6 44 chr11 79461449 79461767 -71321786 + AluJo SINE Alu 1 306 -6 599 189 76 105 chr11 79462260 79462565 -71320988 - L1MC5 LINE L1 -466 7495 7216 1019 174 97 17 chr11 79462607 79462895 -71320658 - MER33 DNA MER1_type -13 311 1 1581 249 51 68 chr11 79462895 79463706 -71319847 - L1MC5 LINE L1 -755 7206 6403 2751 129 5 21 chr11 79463718 79464152 -71319401 - Tigger2a DNA MER2_type -1 433 7 475 238 111 17 chr11 79464238 79464410 -71319143 + HAL1 LINE L1 2025 2212 -295 205 246 108 15 chr11 79465335 79465400 -71318153 + MIR SINE MIR 71 141 -67 * 944 208 184 27 chr11 79465396 79466079 -71317474 + L2 LINE L2 2446 3235 -78 190 348 22 0 chr11 79466713 79466802 -71316751 - MIR SINE MIR -68 140 50 260 261 180 9 chr11 79466852 79466963 -71316590 + MIR SINE MIR 12 141 -121 282 224 37 93 chr11 79467180 79467286 -71316267 - MIR3 SINE MIR -31 177 78 681 243 37 0 chr11 79467286 79467465 -71316088 + MIR SINE MIR 2 186 -63 191 247 71 47 chr11 79469744 79469829 -71313724 + MIR3 SINE MIR 106 192 -16 204 344 10 0 chr11 79469843 79469939 -71313614 + (TCCA)n Simple_repeat Simple_repeat 4 100 0 246 310 80 9 chr11 79470352 79470465 -71313088 + MIR3 SINE MIR 2 122 -86 245 267 30 40 chr11 79470559 79470660 -71312893 - MIR3 SINE MIR 0 208 109 182 329 45 50 chr11 79471549 79471771 -71311782 - L2 LINE L2 -225 3047 2827 409 169 0 0 chr11 79471814 79471879 -71311674 - AluJ/FLAM SINE Alu -237 65 1 904 90 12 24 chr11 79471889 79472055 -71311498 + (TTTC)n Simple_repeat Simple_repeat 2 165 0 2214 92 4 4 chr11 79472055 79472336 -71311217 - AluSp SINE Alu -32 281 1 282 289 36 0 chr11 79472409 79472492 -71311061 - MIR SINE MIR -109 153 68 311 236 203 32 chr11 79473440 79473563 -71309990 + MIR SINE MIR 35 178 -84 414 260 179 0 chr11 79474083 79474206 -71309347 - MIR SINE MIR -13 249 105 734 275 92 75 chr11 79474740 79475303 -71308250 + MLT1K LTR MaLR 10 582 -6 241 93 47 0 chr11 79475347 79475390 -71308163 - MIR SINE MIR -130 132 88 194 289 67 19 chr11 79475528 79475632 -71307921 + L2 LINE L2 3160 3268 -4 21 0 0 0 chr11 79475684 79475705 -71307848 + AT_rich Low_complexity Low_complexity 1 21 0 401 281 44 67 chr11 79476101 79476371 -71307182 - L3 LINE CR1 -16 1561 1298 2080 127 0 10 chr11 79476902 79477193 -71306360 + AluJb SINE Alu 1 288 -24 915 243 35 60 chr11 79477208 79477525 -71306028 + L2 LINE L2 3004 3312 -1 305 301 171 13 chr11 79479210 79479400 -71304153 + MIR SINE MIR 26 241 -21 195 42 0 0 chr11 79479484 79479508 -71304045 + (TCCC)n Simple_repeat Simple_repeat 2 25 0 234 335 140 17 chr11 79479574 79479753 -71303800 - L2 LINE L2 -95 3177 2977 612 238 150 48 chr11 79481893 79482120 -71301433 - MIR SINE MIR -1 261 12 403 258 149 10 chr11 79482646 79482840 -71300713 + MLT1K LTR MaLR 363 583 -5 4584 152 23 38 chr11 79482846 79483811 -71299742 + L1MB4 LINE L1 5103 6046 -173 2020 106 44 15 chr11 79483811 79484124 -71299429 + AluSx SINE Alu 1 321 0 4584 152 23 38 chr11 79484124 79484296 -71299257 + L1MB4 LINE L1 6046 6219 0 2122 209 50 32 chr11 79484323 79484826 -71298727 + LTR40a LTR ERVL 1 512 -7 2049 103 89 0 chr11 79484883 79485154 -71298399 + AluSg SINE Alu 1 295 -15 3921 160 25 4 chr11 79485391 79486135 -71297418 - L1MB7 LINE L1 -19 6165 5406 586 292 58 9 chr11 79486218 79486444 -71297109 + MIR SINE MIR 13 249 -13 185 220 0 85 chr11 79486909 79486968 -71296585 - L3 LINE CR1 -182 1395 1342 220 276 0 17 chr11 79487603 79487661 -71295892 + MIR SINE MIR 89 145 -63 958 118 15 0 chr11 79487703 79487839 -71295714 - AluSp/q SINE Alu -2 311 174 321 358 37 18 chr11 79488014 79488194 -71295359 + MIR SINE MIR 10 145 -63 1407 176 4 24 chr11 79488195 79488445 -71295108 + AluJo SINE Alu 62 306 -6 267 191 0 17 chr11 79489401 79489473 -71294080 - MIR SINE MIR -61 147 94 297 179 38 66 chr11 79489943 79490049 -71293504 - MIR SINE MIR -127 135 33 199 320 127 13 chr11 79490090 79490240 -71293313 + MIR SINE MIR 95 261 -1 2146 162 39 73 chr11 79490462 79490969 -71292584 + LTR2B LTR ERV1 1 490 0 395 303 85 32 chr11 79491162 79491350 -71292203 - L2 LINE L2 -13 3300 3103 314 206 43 81 chr11 79492003 79492149 -71291404 + MIR SINE MIR 51 192 -58 1684 161 17 17 chr11 79493642 79493933 -71289620 - AluJo SINE Alu -21 291 1 516 274 61 0 chr11 79496269 79496433 -71287120 - MIR SINE MIR -26 236 63 24 32 0 0 chr11 79497528 79497559 -71285994 + AT_rich Low_complexity Low_complexity 1 31 0 2319 97 0 13 chr11 79497638 79497937 -71285616 - AluSg SINE Alu -15 295 1 215 241 241 8 chr11 79497948 79498081 -71285472 + MIR SINE MIR 72 235 -27 2051 145 3 0 chr11 79498241 79498538 -71285015 + AluSx SINE Alu 1 298 -14 186 288 54 36 chr11 79499027 79499138 -71284415 + MIR SINE MIR 150 262 0 206 333 15 0 chr11 79499147 79499213 -71284340 - L2 LINE L2 -12 3301 3235 321 200 0 59 chr11 79499370 79499455 -71284098 - MIR SINE MIR -81 181 102 973 285 130 24 chr11 79499528 79499988 -71283565 - MLT1K LTR MaLR -3 585 77 2317 68 0 68 chr11 79500153 79500477 -71283076 + AluY SINE Alu 1 302 -9 2291 78 0 14 chr11 79502447 79502730 -71280823 + AluSc SINE Alu 1 279 -30 188 35 35 0 chr11 79502733 79502762 -71280791 + (TAA)n Simple_repeat Simple_repeat 2 31 0 775 139 0 0 chr11 79502854 79502962 -71280591 + FLAM_A SINE Alu 21 128 -14 255 103 0 0 chr11 79502981 79503020 -71280533 + (CA)n Simple_repeat Simple_repeat 2 40 0 611 300 45 89 chr11 79503022 79503485 -71280068 + L2 LINE L2 2830 3272 0 524 169 54 43 chr11 79503553 79503694 -71279859 - MLT1G1 LTR MaLR -441 147 1 * 2099 133 73 52 chr11 79503676 79503892 -71279661 - MSTB1 LTR MaLR 0 432 203 2328 77 7 3 chr11 79503892 79504179 -71279374 - AluSg SINE Alu -22 288 1 2099 133 73 52 chr11 79504179 79504346 -71279207 - MSTB1 LTR MaLR -229 203 41 71 33 0 0 chr11 79504346 79504438 -71279115 + AT_rich Low_complexity Low_complexity 1 92 0 367 94 19 0 chr11 79504449 79504502 -71279051 - MSTB1 LTR MaLR -378 54 1 294 163 0 0 chr11 79504502 79504545 -71279008 - MLT1K LTR MaLR -552 43 1 252 297 50 40 chr11 79504736 79504837 -71278716 - L2 LINE L2 0 3272 3171 1320 188 83 0 chr11 79505464 79505693 -71277860 + AluJo SINE Alu 1 248 -64 21 0 0 0 chr11 79505792 79505813 -71277740 + AT_rich Low_complexity Low_complexity 1 21 0 469 248 71 7 chr11 79505825 79505966 -71277587 + L2 LINE L2 3164 3313 0 557 279 32 0 chr11 79506414 79506568 -71276985 - MIR SINE MIR -70 192 34 2323 91 0 0 chr11 79506673 79506960 -71276593 - AluSc SINE Alu -9 300 14 24 67 0 0 chr11 79507124 79507169 -71276384 + AT_rich Low_complexity Low_complexity 1 45 0 2128 134 7 0 chr11 79507259 79507566 -71275987 - AluSq SINE Alu -4 309 1 477 0 0 0 chr11 79507912 79507965 -71275588 + (TGGA)n Simple_repeat Simple_repeat 3 55 0 1736 161 7 7 chr11 79507965 79508238 -71275315 - AluJb SINE Alu -34 278 6 456 132 0 0 chr11 79508537 79508613 -71274940 - AluJ/FRAM SINE Alu -5 307 232 1374 186 116 11 chr11 79508617 79508892 -71274661 - AluSg SINE Alu -6 304 1 285 287 109 0 chr11 79508892 79508993 -71274560 - MIR SINE MIR -112 150 39 307 252 37 68 chr11 79509013 79509197 -71274356 - MLT1J2 LTR MaLR -12 410 266 2258 69 3 24 chr11 79509282 79509571 -71273982 + AluY SINE Alu 5 287 -24 766 131 0 15 chr11 79509602 79509721 -71273832 - L1MB2 LINE L1 -25 6146 6028 561 104 13 0 chr11 79509721 79509798 -71273755 - MADE1 DNA Mariner -2 78 1 458 127 13 25 chr11 79510094 79510173 -71273380 - MADE1 DNA Mariner -2 78 1 2973 207 20 66 chr11 79510179 79510936 -71272617 - L1MB5 LINE L1 -151 6023 5302 421 20 0 20 chr11 79510969 79511020 -71272533 - L1P3 LINE L1 -4734 1141 1092 2430 56 3 0 chr11 79511162 79511471 -71272082 - AluY SINE Alu 0 310 1 480 35 0 0 chr11 79511485 79511543 -71272010 + (CA)n Simple_repeat Simple_repeat 1 58 0 2143 67 57 25 chr11 79511796 79512078 -71271475 + AluSc SINE Alu 1 291 -18 647 171 0 27 chr11 79512084 79512195 -71271358 + MER3 DNA MER1_type 6 113 -96 2062 79 0 0 chr11 79512260 79512526 -71271027 + L1PA6 LINE L1 5889 6154 0 561 223 58 0 chr11 79512574 79512695 -71270858 - L2 LINE L2 0 3313 3186 27290 124 6 19 chr11 79512729 79514868 -71268685 + L1PA8A LINE L1 8 2172 -4274 2280 113 0 3 chr11 79514868 79515169 -71268384 - AluSg SINE Alu -10 300 1 27290 124 6 19 chr11 79515169 79516431 -71267122 + L1PA8A LINE L1 2172 3448 -2998 2439 84 0 0 chr11 79516431 79516730 -71266823 + AluY SINE Alu 1 299 -12 27290 124 6 19 chr11 79516730 79519747 -71263806 + L1PA8A LINE L1 3448 6434 -12 855 237 19 9 chr11 79519865 79520076 -71263477 + MIR SINE MIR 20 232 -30 317 341 24 6 chr11 79520166 79520336 -71263217 - L2 LINE L2 -177 3136 2964 267 286 125 9 chr11 79520364 79520476 -71263077 - MIR SINE MIR -116 146 22 347 262 121 20 chr11 79521157 79521306 -71262247 + MIR3 SINE MIR 41 204 -4 1077 156 50 14 chr11 79522028 79522246 -71261307 + L1PA13 LINE L1 5935 6160 -3 894 240 47 21 chr11 79522330 79522563 -71260990 - MER8 DNA MER2_type 0 239 1 640 227 81 16 chr11 79522610 79522795 -71260758 + MIR SINE MIR 52 248 -14 22 0 0 0 chr11 79522817 79522839 -71260714 + AT_rich Low_complexity Low_complexity 1 22 0 234 128 0 0 chr11 79523148 79523187 -71260366 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 1622 97 0 0 chr11 79523541 79523747 -71259806 + THE1B LTR MaLR 159 364 0 342 274 9 26 chr11 79523747 79523860 -71259693 - MIR3 SINE MIR -50 158 48 181 262 33 0 chr11 79524454 79524515 -71259038 + L2 LINE L2 2991 3053 -219 218 295 51 0 chr11 79525003 79525081 -71258472 + MIR SINE MIR 20 101 -107 263 107 429 0 chr11 79525082 79525138 -71258415 - MADE1 DNA Mariner 0 80 1 248 203 177 13 chr11 79525142 79525221 -71258332 + MIR3 SINE MIR 105 196 -12 2393 76 7 3 chr11 79525843 79526147 -71257406 - AluY SINE Alu -6 305 1 476 286 48 32 chr11 79526271 79526460 -71257093 + MIR SINE MIR 19 210 -52 570 199 98 120 chr11 79526792 79526954 -71256599 - MIR SINE MIR -1 261 106 1372 164 0 34 chr11 79526954 79527216 -71256337 + L1MB7 LINE L1 5932 6184 0 570 199 98 120 chr11 79527216 79527319 -71256234 - MIR SINE MIR -156 106 2 400 251 108 98 chr11 79527717 79527807 -71255746 + MLT1J2 LTR MaLR 81 169 -240 2428 57 6 35 chr11 79527807 79528123 -71255430 - AluY SINE Alu 0 311 5 400 251 108 98 chr11 79528123 79528392 -71255161 + MLT1J2 LTR MaLR 169 397 -12 311 294 98 0 chr11 79528412 79528514 -71255039 + MIR SINE MIR 39 150 -112 1374 186 116 11 chr11 79528514 79528789 -71254764 + AluSg SINE Alu 1 304 -6 456 132 0 0 chr11 79528793 79528869 -71254684 + AluJ/FRAM SINE Alu 232 307 -5 1736 161 7 7 chr11 79529168 79529441 -71254112 + AluJb SINE Alu 6 278 -34 477 0 0 0 chr11 79529441 79529494 -71254059 + (TCCA)n Simple_repeat Simple_repeat 3 55 0 1978 134 16 3 chr11 79529840 79530145 -71253408 + AluSq SINE Alu 1 309 -4 24 67 0 0 chr11 79530235 79530280 -71253273 + AT_rich Low_complexity Low_complexity 1 45 0 2323 91 0 0 chr11 79530444 79530731 -71252822 + AluSc SINE Alu 14 300 -9 557 279 32 0 chr11 79530836 79530990 -71252563 + MIR SINE MIR 34 192 -70 469 248 71 7 chr11 79531439 79531580 -71251973 - L2 LINE L2 0 3313 3164 21 0 0 0 chr11 79531592 79531613 -71251940 + AT_rich Low_complexity Low_complexity 1 21 0 1320 188 83 0 chr11 79531712 79531941 -71251612 - AluJo SINE Alu -64 248 1 252 297 50 40 chr11 79532568 79532669 -71250884 + L2 LINE L2 3171 3272 0 294 163 0 0 chr11 79532860 79532903 -71250650 + MLT1G1 LTR MaLR 1 43 -552 367 94 19 0 chr11 79532903 79532956 -71250597 + MSTB1 LTR MaLR 1 54 -378 71 33 0 0 chr11 79532967 79533059 -71250494 + AT_rich Low_complexity Low_complexity 1 92 0 2099 133 73 52 chr11 79533059 79533226 -71250327 + MSTB1 LTR MaLR 41 203 -229 2328 77 7 3 chr11 79533226 79533513 -71250040 + AluSg SINE Alu 1 288 -22 2099 133 73 52 chr11 79533513 79533729 -71249824 + MSTB1 LTR MaLR 203 432 0 524 169 54 43 chr11 79533711 79533852 -71249701 + MLT1G1 LTR MaLR 1 89 -441 * 611 300 45 89 chr11 79533920 79534383 -71249170 - L2 LINE L2 0 3272 2830 255 103 0 0 chr11 79534385 79534424 -71249129 + (TG)n Simple_repeat Simple_repeat 2 40 0 775 139 0 0 chr11 79534443 79534551 -71249002 - FLAM_A SINE Alu -14 128 21 188 35 35 0 chr11 79534643 79534672 -71248881 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2291 78 0 14 chr11 79534675 79534958 -71248595 - AluSc SINE Alu -30 279 1 2321 82 0 53 chr11 79536929 79537248 -71246305 - AluY SINE Alu -9 302 1 2157 116 0 0 chr11 79537343 79537628 -71245925 + AluSx SINE Alu 1 285 -27 189 0 0 0 chr11 79537631 79537652 -71245901 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 691 179 15 8 chr11 79537932 79538066 -71245487 - FLAM_A SINE Alu 0 142 8 296 226 58 51 chr11 79538071 79538208 -71245345 - HAL1 LINE L1 0 2507 2370 959 139 7 20 chr11 79538210 79538361 -71245192 - AluJo SINE Alu -163 149 1 1235 211 116 41 chr11 79538361 79538477 -71245076 - HAL1 LINE L1 -764 1743 1637 765 211 19 25 chr11 79538477 79538638 -71244915 - FRAM SINE Alu -6 160 1 1235 211 116 41 chr11 79538638 79538961 -71244592 - HAL1 LINE L1 -870 1637 1271 40 37 0 0 chr11 79539051 79539105 -71244448 + AT_rich Low_complexity Low_complexity 1 54 0 358 271 113 98 chr11 79539105 79539229 -71244324 - HAL1 LINE L1 -1293 1214 1093 1942 144 0 7 chr11 79539229 79539514 -71244039 - AluSx SINE Alu -29 283 1 358 271 113 98 chr11 79539514 79540436 -71243117 - HAL1 LINE L1 -1414 1093 107 377 270 117 0 chr11 79540752 79540974 -71242579 + L1ME LINE L1 5265 5512 -652 369 249 17 62 chr11 79541033 79541196 -71242357 + MIR SINE MIR 45 141 -67 505 67 0 0 chr11 79541434 79541509 -71242044 + AluSc SINE Alu 231 305 -4 185 248 59 98 chr11 79542045 79542198 -71241355 - MIR SINE MIR -12 250 104 341 248 158 23 chr11 79542231 79542364 -71241189 - MIR SINE MIR -105 157 7 3637 116 65 8 chr11 79542805 79543329 -71240224 + MER41C LTR ERV1 1 554 0 487 231 29 0 chr11 79543899 79544003 -71239550 + MIR SINE MIR 37 143 -119 241 301 54 72 chr11 79544385 79544404 -71239149 - L2 LINE L2 0 3272 3254 2021 131 34 0 chr11 79544404 79544702 -71238851 - AluSx SINE Alu -4 308 1 241 301 54 72 chr11 79544702 79544848 -71238705 - L2 LINE L2 -18 3254 3110 524 265 53 20 chr11 79544850 79545001 -71238552 + LTR50 LTR ERVL 12 167 -628 638 233 208 4 chr11 79545164 79545404 -71238149 + LTR50 LTR ERVL 503 791 -4 416 225 125 17 chr11 79545426 79545546 -71238007 - MIR3 SINE MIR -44 164 32 352 323 82 45 chr11 79545549 79545769 -71237784 - L2 LINE L2 -11 3261 3034 363 368 29 12 chr11 79546247 79546418 -71237135 + L2 LINE L2 2857 3030 -242 1970 148 0 26 chr11 79546418 79546728 -71236825 - AluJb SINE Alu -10 302 1 359 287 60 30 chr11 79547419 79547586 -71235967 + MIR SINE MIR 21 192 -70 461 255 52 68 chr11 79547655 79547871 -71235682 + MIR SINE MIR 11 212 -50 189 200 107 67 chr11 79548562 79548637 -71234916 - MIR SINE MIR -165 97 20 2114 233 88 61 chr11 79548776 79549009 -71234544 + HAL1 LINE L1 87 312 -2195 2343 104 0 0 chr11 79549009 79549317 -71234236 - AluSx SINE Alu -3 309 2 2114 233 88 61 chr11 79549317 79549775 -71233778 + HAL1 LINE L1 312 797 -1710 1442 167 8 34 chr11 79549898 79550021 -71233532 - AluJb SINE Alu -55 257 132 2370 84 0 13 chr11 79550021 79550332 -71233221 - AluY SINE Alu 0 311 5 1442 167 8 34 chr11 79550332 79550472 -71233081 - AluJb SINE Alu -180 132 1 1505 173 92 7 chr11 79550485 79550757 -71232796 - AluJb SINE Alu -17 295 1 493 233 19 0 chr11 79550758 79550861 -71232692 + HAL1 LINE L1 785 889 -1618 2259 94 3 0 chr11 79551017 79551305 -71232248 + AluSp SINE Alu 1 289 -24 1592 129 0 0 chr11 79551890 79552115 -71231438 + AluSx SINE Alu 1 225 -87 394 244 34 17 chr11 79552602 79552721 -71230832 - MIR SINE MIR -55 207 87 2215 112 7 0 chr11 79553870 79554175 -71229378 - AluY SINE Alu -2 309 3 327 341 89 0 chr11 79554909 79555032 -71228521 - MIR SINE MIR -47 215 82 1276 257 116 15 chr11 79555121 79555525 -71228028 + L2 LINE L2 2867 3311 -2 1871 157 0 0 chr11 79555535 79555837 -71227716 + AluSx SINE Alu 3 304 0 345 292 83 30 chr11 79555895 79555980 -71227573 + MIR SINE MIR 20 99 -163 2389 80 7 0 chr11 79555980 79556280 -71227273 - AluY SINE Alu -9 302 1 345 292 83 30 chr11 79556280 79556362 -71227191 + MIR SINE MIR 99 196 -66 2409 252 124 18 chr11 79556586 79557359 -71226194 + L2 LINE L2 2012 2866 -448 679 308 17 21 chr11 79557495 79557732 -71225821 + L2 LINE L2 2888 3123 -190 1794 130 19 26 chr11 79557847 79558155 -71225398 - AluSq SINE Alu -7 306 1 1907 138 0 17 chr11 79558452 79558743 -71224810 + AluJo SINE Alu 12 297 -15 2393 166 43 19 chr11 79558754 79559241 -71224312 + L1MB8 LINE L1 5369 5867 -311 201 181 32 0 chr11 79559250 79559344 -71224209 + (TA)n Simple_repeat Simple_repeat 2 98 0 502 81 58 23 chr11 79559356 79559528 -71224025 + (TA)n Simple_repeat Simple_repeat 1 178 0 1980 140 11 0 chr11 79559528 79559814 -71223739 - AluSx SINE Alu -23 289 1 1437 176 105 10 chr11 79559814 79560109 -71223444 + L1MB8 LINE L1 5853 6175 -3 639 244 36 24 chr11 79560172 79560340 -71223213 - FRAM SINE Alu -9 167 1 206 355 57 43 chr11 79560348 79560489 -71223064 - MIR SINE MIR -66 196 54 2070 117 7 10 chr11 79560939 79561239 -71222314 + AluSq SINE Alu 1 299 -14 345 169 56 54 chr11 79561257 79561386 -71222167 + L1MD2 LINE L1 6029 6162 -4 498 91 45 2 chr11 79561401 79561495 -71222058 + L1MB2 LINE L1 5268 5371 -798 557 161 25 0 chr11 79561495 79561576 -71221977 + AluJ/FLAM SINE Alu 2 84 -228 240 184 0 0 chr11 79561576 79561625 -71221928 + A-rich Low_complexity Low_complexity 1 49 0 * 248 158 18 0 chr11 79561624 79561681 -71221872 + GA-rich Low_complexity Low_complexity 3 60 0 885 155 114 68 chr11 79561714 79561933 -71221620 + L1MB2 LINE L1 5353 5581 -590 3452 166 15 20 chr11 79561967 79562005 -71221548 + L1MB2 LINE L1 5571 5608 -577 1056 192 0 6 chr11 79562005 79562177 -71221376 + FAM SINE Alu 1 171 -4 3452 166 15 20 chr11 79562177 79562756 -71220797 + L1MB2 LINE L1 5608 6185 0 379 279 214 7 chr11 79562808 79562962 -71220591 - MIR SINE MIR 0 262 77 1705 175 16 7 chr11 79563116 79563425 -71220128 - AluJo SINE Alu 0 312 1 2342 104 0 0 chr11 79563434 79563731 -71219822 - AluSx SINE Alu -15 297 1 1159 159 34 29 chr11 79563821 79564028 -71219525 - MER3 DNA MER1_type 0 209 2 1976 152 0 3 chr11 79564861 79565157 -71218396 + AluJb SINE Alu 1 295 -17 25 0 0 0 chr11 79565164 79565189 -71218364 + AT_rich Low_complexity Low_complexity 1 25 0 338 362 65 36 chr11 79565193 79565316 -71218237 - L2 LINE L2 -337 2977 2859 2264 93 3 13 chr11 79565316 79565616 -71217937 + AluY SINE Alu 1 297 -14 338 362 65 36 chr11 79565616 79565848 -71217705 - L2 LINE L2 -455 2859 2612 540 290 88 18 chr11 79566630 79566847 -71216706 + MIR SINE MIR 19 250 -12 372 245 57 0 chr11 79566897 79567003 -71216550 + MIR SINE MIR 147 258 -4 251 298 43 43 chr11 79567061 79567155 -71216398 + L2 LINE L2 3220 3313 0 2064 129 0 0 chr11 79567164 79567444 -71216109 + AluSx SINE Alu 1 280 -32 225 0 0 0 chr11 79567444 79567469 -71216084 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 275 219 153 41 chr11 79567548 79567695 -71215858 - MIR SINE MIR -61 147 33 1529 140 31 84 chr11 79568189 79568511 -71215042 + AluJb SINE Alu 1 305 -7 1863 119 17 17 chr11 79568579 79568873 -71214680 + AluJo SINE Alu 1 294 -18 22 35 0 0 chr11 79568931 79568960 -71214593 + AT_rich Low_complexity Low_complexity 1 29 0 281 340 92 26 chr11 79569556 79569709 -71213844 - L2 LINE L2 -295 2977 2815 1908 130 0 11 chr11 79569937 79570214 -71213339 + AluSx SINE Alu 29 302 -10 355 294 101 0 chr11 79570329 79570448 -71213105 + L2 LINE L2 3182 3312 -1 1613 174 17 37 chr11 79570550 79570849 -71212704 + AluJo SINE Alu 1 293 -19 40 0 0 0 chr11 79570886 79570926 -71212627 + AT_rich Low_complexity Low_complexity 1 40 0 1369 198 14 17 chr11 79570926 79571219 -71212334 + L1MB3 LINE L1 5892 6183 0 1876 154 0 32 chr11 79571225 79571537 -71212016 + AluSg SINE Alu 1 302 -8 1846 139 23 0 chr11 79571547 79571849 -71211704 + L1MB3 LINE L1 5712 6020 -163 973 144 0 44 chr11 79571856 79572016 -71211537 - AluJo SINE Alu -159 153 1 3267 191 63 33 chr11 79572039 79572685 -71210868 + L1MB5 LINE L1 4513 5138 -1036 1566 174 68 27 chr11 79572685 79572979 -71210574 + AluJo SINE Alu 1 306 -6 3267 191 63 33 chr11 79572979 79573610 -71209943 + L1MB5 LINE L1 5138 5831 -343 2002 91 8 0 chr11 79573610 79573873 -71209680 + AluSq SINE Alu 1 265 -48 457 121 30 0 chr11 79573876 79573942 -71209611 + AluSp/q SINE Alu 222 289 -24 2113 163 20 11 chr11 79573942 79574292 -71209261 + L1MB5 LINE L1 5814 6166 -8 1682 174 23 20 chr11 79574543 79574847 -71208706 - AluJb SINE Alu -7 305 1 981 163 12 0 chr11 79575105 79575265 -71208288 + L1MC/D LINE L1 5447 5608 -751 1994 141 7 3 chr11 79575265 79575571 -71207982 + AluSx SINE Alu 1 307 -5 2273 76 3 30 chr11 79575571 79575874 -71207679 + AluSp SINE Alu 1 295 -18 24 32 0 0 chr11 79576315 79576346 -71207207 + AT_rich Low_complexity Low_complexity 1 31 0 2315 107 0 0 chr11 79576426 79576725 -71206828 - AluSg SINE Alu -11 299 1 254 241 241 8 chr11 79576736 79576869 -71206684 + MIR SINE MIR 72 235 -27 2039 145 3 0 chr11 79577029 79577326 -71206227 + AluSx SINE Alu 1 298 -14 213 288 54 36 chr11 79577815 79577926 -71205627 + MIR SINE MIR 150 262 0 224 402 31 8 chr11 79577930 79578057 -71205496 - L2 LINE L2 -6 3266 3137 346 200 0 59 chr11 79578158 79578243 -71205310 - MIR SINE MIR -81 181 102 970 299 131 25 chr11 79578316 79578844 -71204709 - MLT1K LTR MaLR -3 585 2 2415 80 0 16 chr11 79578941 79579255 -71204298 + AluY SINE Alu 1 309 -2 245 311 67 8 chr11 79579453 79579572 -71203981 + MIR SINE MIR 61 186 -76 363 311 55 30 chr11 79579716 79579880 -71203673 + L1M4 LINE L1 4151 4318 -1828 2347 96 0 34 chr11 79579890 79580027 -71203526 + AluSq SINE Alu 1 141 -172 2083 135 0 3 chr11 79580027 79580324 -71203229 + AluY SINE Alu 1 296 -15 2347 96 0 34 chr11 79580324 79580510 -71203043 + AluSq SINE Alu 141 313 0 219 36 0 0 chr11 79580514 79580542 -71203011 + (T)n Simple_repeat Simple_repeat 1 28 0 1068 181 5 3 chr11 79580760 79582266 -71201287 - ALR/Alpha Satellite centromeric 0 1508 1 1130 178 1 1 chr11 79582384 79583025 -71200528 - ALR/Alpha Satellite centromeric 0 641 1 527 141 18 82 chr11 79583219 79583389 -71200164 - ALR/Alpha Satellite centromeric -13 159 1 * 1092 172 8 6 chr11 79583267 79584350 -71199203 - ALR/Alpha Satellite centromeric 0 1085 1 4879 53 8 12 chr11 79584519 79585157 -71198396 - SVA Other Other -751 635 1 1731 184 26 19 chr11 79585600 79585910 -71197643 - AluJb SINE Alu 0 312 1 603 266 21 7 chr11 79586093 79586236 -71197317 - MIR SINE MIR -110 152 8 269 335 70 43 chr11 79586290 79586475 -71197078 - MIR SINE MIR -70 192 3 2213 99 0 7 chr11 79586505 79586828 -71196725 - AluSg SINE Alu 0 321 1 182 250 135 0 chr11 79587268 79587320 -71196233 + L3 LINE CR1 1237 1295 -282 1874 141 55 0 chr11 79587464 79587755 -71195798 - AluSg SINE Alu -3 307 1 450 212 59 71 chr11 79588358 79588528 -71195025 - MLT1J LTR MaLR -6 505 338 196 263 105 61 chr11 79588888 79589002 -71194551 - MIR SINE MIR -60 202 84 402 359 92 16 chr11 79589008 79589323 -71194230 + L2 LINE L2 2345 2683 -631 21 0 0 0 chr11 79590068 79590089 -71193464 + AT_rich Low_complexity Low_complexity 1 21 0 631 229 128 16 chr11 79590727 79590915 -71192638 - MIR SINE MIR -4 258 50 2375 81 0 16 chr11 79591605 79591914 -71191639 - AluY SINE Alu -7 304 1 970 299 131 25 chr11 79592011 79592539 -71191014 + MLT1K LTR MaLR 2 585 -3 346 200 0 59 chr11 79592612 79592697 -71190856 + MIR SINE MIR 102 181 -81 224 402 31 8 chr11 79592798 79592925 -71190628 + L2 LINE L2 3137 3266 -6 213 288 54 36 chr11 79592929 79593040 -71190513 - MIR SINE MIR 0 262 150 4271 96 15 22 chr11 79593400 79594683 -71188870 + SVA Other Other 397 1398 0 1533 155 14 64 chr11 79595439 79595736 -71187817 + AluJo SINE Alu 5 286 -26 945 149 13 0 chr11 79595757 79595911 -71187642 + AluJb SINE Alu 137 292 -20 251 296 91 55 chr11 79595964 79596184 -71187369 - MIR SINE MIR -26 236 9 1789 139 31 31 chr11 79596350 79596638 -71186915 - AluSq SINE Alu -21 292 5 240 195 88 157 chr11 79596780 79596939 -71186614 - MIR SINE MIR -75 187 40 274 291 82 51 chr11 79597252 79597367 -71186186 + MIR SINE MIR 66 189 -73 2216 109 10 0 chr11 79597367 79597660 -71185893 + AluSq SINE Alu 1 296 -17 274 291 82 51 chr11 79597660 79597702 -71185851 + MIR SINE MIR 189 228 -34 25 0 0 0 chr11 79598726 79598751 -71184802 + AT_rich Low_complexity Low_complexity 1 25 0 461 227 133 0 chr11 79598947 79599097 -71184456 - MIR SINE MIR -15 247 78 350 259 132 40 chr11 79599370 79599544 -71184009 - MIR SINE MIR -70 192 3 288 314 64 7 chr11 79599850 79599990 -71183563 - MIR SINE MIR -17 245 98 716 225 30 58 chr11 79600017 79600258 -71183295 + L1MA10 LINE L1 5942 6334 0 221 318 103 8 chr11 79600543 79600669 -71182884 + MIR SINE MIR 20 157 -105 1503 162 121 53 chr11 79600679 79601019 -71182534 - MLT1A1 LTR MaLR -2 363 1 352 293 121 0 chr11 79601019 79601159 -71182394 - MIR SINE MIR -8 254 98 340 311 25 0 chr11 79601155 79601277 -71182276 - MIR SINE MIR -89 173 49 * 220 341 73 0 chr11 79601494 79601617 -71181936 - MIR SINE MIR -93 169 38 505 244 7 37 chr11 79603215 79603350 -71180203 - MIR SINE MIR -98 164 34 2392 88 0 0 chr11 79603501 79603797 -71179756 - AluSg SINE Alu -14 296 1 1987 92 0 11 chr11 79604020 79604282 -71179271 + AluY SINE Alu 1 259 -52 2251 123 0 0 chr11 79604804 79605112 -71178441 + AluSg SINE Alu 1 308 -2 525 336 127 15 chr11 79605187 79605526 -71178027 - L2 LINE L2 -4 3268 2892 1781 134 50 11 chr11 79605959 79606242 -71177311 - AluJb SINE Alu -18 294 1 2512 65 0 13 chr11 79606249 79606556 -71176997 - AluY SINE Alu -8 303 1 610 171 0 18 chr11 79606658 79606769 -71176784 + FLAM_C SINE Alu 27 135 -8 624 243 19 29 chr11 79607024 79607230 -71176323 - MIR SINE MIR 0 262 59 2130 134 0 0 chr11 79607365 79607672 -71175881 + AluSx SINE Alu 1 307 -5 264 320 31 55 chr11 79607936 79608064 -71175489 + MIR SINE MIR 20 144 -64 787 185 0 0 chr11 79608078 79608208 -71175345 + FLAM_A SINE Alu 1 130 -3 406 158 7 158 chr11 79608873 79608988 -71174565 + Charlie1 DNA MER1_type 1488 1576 -1185 2203 114 0 3 chr11 79608988 79609285 -71174268 + AluSx SINE Alu 2 297 -15 406 158 7 158 chr11 79609285 79609321 -71174232 + Charlie1 DNA MER1_type 1576 1616 -1145 661 213 0 0 chr11 79609322 79609444 -71174109 + FLAM_A SINE Alu 2 123 -10 752 144 17 0 chr11 79609577 79609695 -71173858 - Tigger3(Golem) DNA MER2_type -2886 143 24 214 272 12 25 chr11 79609717 79609798 -71173755 - MIR SINE MIR -10 252 173 218 349 64 44 chr11 79609853 79610102 -71173451 + L2 LINE L2 2946 3199 -73 186 204 45 0 chr11 79610157 79610201 -71173352 - MIR3 SINE MIR -54 154 109 2259 114 0 3 chr11 79610388 79610687 -71172866 - AluSq SINE Alu -15 298 1 1724 171 0 24 chr11 79610795 79611093 -71172460 - AluJo SINE Alu -21 291 1 2066 201 62 46 chr11 79611198 79611361 -71172192 + L1ME1 LINE L1 5423 5582 -584 2187 124 0 3 chr11 79611361 79611659 -71171894 - AluSx SINE Alu -15 297 1 2066 201 62 46 chr11 79611659 79612155 -71171398 + L1ME1 LINE L1 5582 6069 -97 315 0 0 0 chr11 79612155 79612190 -71171363 + (CA)n Simple_repeat Simple_repeat 2 36 0 2066 201 62 46 chr11 79612190 79612256 -71171297 + L1ME1 LINE L1 6069 6013 -153 1925 166 0 3 chr11 79612256 79612552 -71171001 + AluJo SINE Alu 1 295 -17 2066 201 62 46 chr11 79612552 79612673 -71170880 + L1ME1 LINE L1 6012 6130 -36 506 274 110 59 chr11 79612974 79613414 -71170139 + L1ME4a LINE L1 5568 6033 -88 2260 98 0 3 chr11 79613414 79613709 -71169844 - AluSc SINE Alu -15 294 1 506 274 110 59 chr11 79613709 79613724 -71169829 + L1ME4a LINE L1 6033 6046 -75 775 157 0 15 chr11 79613770 79613904 -71169649 - FLAM_C SINE Alu 0 143 12 2303 82 0 14 chr11 79614266 79614589 -71168964 - AluSx SINE Alu 0 312 1 1933 135 13 35 chr11 79614845 79615157 -71168396 - AluJb SINE Alu -6 306 2 247 300 4 89 chr11 79615704 79615902 -71167651 + MIR SINE MIR 30 212 -50 2534 54 0 3 chr11 79616170 79616466 -71167087 - AluY SINE Alu -16 295 1 1736 146 0 67 chr11 79616486 79616632 -71166921 + AluJo SINE Alu 7 122 -190 1974 138 0 20 chr11 79616632 79616936 -71166617 + AluSx SINE Alu 13 310 -2 1736 146 0 67 chr11 79616936 79617104 -71166449 + AluJo SINE Alu 122 300 -12 2264 86 28 0 chr11 79617651 79617942 -71165611 + AluSq SINE Alu 1 299 -14 389 307 185 17 chr11 79618550 79618788 -71164765 + L2 LINE L2 2995 3272 0 292 206 43 11 chr11 79618960 79619052 -71164501 + MIR SINE MIR 48 142 -120 1883 174 0 0 chr11 79619060 79619353 -71164200 + AluJo SINE Alu 1 293 -19 393 169 60 36 chr11 79619577 79619660 -71163893 + MLT1C LTR MaLR 8 92 -375 1432 220 46 35 chr11 79619702 79620070 -71163483 + MLT1C LTR MaLR 96 467 0 2302 86 0 19 chr11 79620196 79620509 -71163044 + AluSx SINE Alu 1 307 -5 289 286 123 18 chr11 79620693 79620864 -71162689 + MIR SINE MIR 20 208 -54 1690 163 32 21 chr11 79621385 79621667 -71161886 + AluJb SINE Alu 9 293 -19 1227 192 35 73 chr11 79621667 79621980 -71161573 - Charlie4a DNA MER1_type -206 302 2 228 250 8 137 chr11 79622083 79622207 -71161346 + MIR3 SINE MIR 9 116 -92 183 146 0 0 chr11 79622311 79622352 -71161201 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2240 108 0 16 chr11 79622635 79622951 -71160602 + AluSx SINE Alu 1 311 -1 1379 180 77 168 chr11 79623048 79623107 -71160446 - L1MC5 LINE L1 -583 7378 7315 235 35 0 0 chr11 79623107 79623136 -71160417 + AluYa5 SINE Alu 1 29 -271 2387 36 43 0 chr11 79623136 79623412 -71160141 + AluYa5 SINE Alu 8 295 -16 1379 180 77 168 chr11 79623412 79624167 -71159386 - L1MC5 LINE L1 -644 7317 6612 2549 63 0 13 chr11 79624168 79624483 -71159070 + AluY SINE Alu 1 311 0 522 169 30 72 chr11 79624546 79624712 -71158841 - L1MC5 LINE L1 -2334 5474 5316 2424 88 3 25 chr11 79624712 79625031 -71158522 - AluSq SINE Alu -1 312 1 249 33 0 0 chr11 79625043 79625073 -71158480 + (TGGGGG)n Simple_repeat Simple_repeat 4 33 0 2048 142 0 0 chr11 79625073 79625354 -71158199 - AluSx SINE Alu -28 284 1 2722 208 75 39 chr11 79625471 79625579 -71157974 - L1MD2 LINE L1 -54 6112 6009 1934 165 0 3 chr11 79625579 79625876 -71157677 - AluJo SINE Alu -16 296 1 2722 208 75 39 chr11 79625876 79625942 -71157611 - L1MD2 LINE L1 -157 6009 5947 297 0 0 0 chr11 79625942 79625975 -71157578 + (TG)n Simple_repeat Simple_repeat 2 34 0 2722 208 75 39 chr11 79625975 79626470 -71157083 - L1MD2 LINE L1 -219 5947 5578 2187 124 0 3 chr11 79626470 79626768 -71156785 + AluSx SINE Alu 1 297 -15 2722 208 75 39 chr11 79626768 79626930 -71156623 - L1MD2 LINE L1 -588 5578 5423 1765 172 0 17 chr11 79627036 79627332 -71156221 + AluJo SINE Alu 1 291 -21 2292 112 0 3 chr11 79627440 79627743 -71155810 + AluSq SINE Alu 1 302 -11 1936 148 14 20 chr11 79627818 79628115 -71155438 + AluJb SINE Alu 1 295 -17 1731 159 37 4 chr11 79628520 79628844 -71154709 - AluJb SINE Alu 0 336 4 223 213 0 0 chr11 79629034 79629081 -71154472 - L2 LINE L2 -5 3308 3262 545 284 85 7 chr11 79629097 79629135 -71154418 - L1M4 LINE L1 -1921 4225 4191 228 67 0 0 chr11 79629135 79629165 -71154388 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 1533 192 7 7 chr11 79629168 79629444 -71154109 - AluJo SINE Alu -36 276 1 545 284 85 7 chr11 79629444 79629672 -71153881 - L1M4 LINE L1 -1956 4190 3934 672 161 116 0 chr11 79629672 79629784 -71153769 + FLAM_C SINE Alu 2 126 -17 2431 88 0 0 chr11 79629808 79630103 -71153450 - AluSc SINE Alu -14 295 1 3261 255 70 36 chr11 79630105 79630751 -71152802 - L1M4 LINE L1 -2208 3938 3315 2014 104 76 0 chr11 79630751 79631039 -71152514 - AluSx SINE Alu -2 310 1 3261 255 70 36 chr11 79631039 79631441 -71152112 - L1M4 LINE L1 -2831 3315 2928 2390 101 3 0 chr11 79631441 79631749 -71151804 - AluSg SINE Alu -1 309 1 3261 255 70 36 chr11 79631749 79632084 -71151469 - L1M4 LINE L1 -3218 2928 2507 2244 116 0 0 chr11 79632278 79632571 -71150982 + AluSx SINE Alu 2 294 -18 1304 226 127 20 chr11 79632575 79632977 -71150576 + MLT2B1 LTR ERVL 1 445 -75 459 0 0 0 chr11 79632978 79633029 -71150524 + (TG)n Simple_repeat Simple_repeat 1 51 0 12345 161 20 35 chr11 79633030 79635066 -71148487 + ERVL LTR ERVL 1559 3564 -2200 2222 116 0 0 chr11 79635066 79635359 -71148194 + AluSq SINE Alu 5 297 -16 12345 161 20 35 chr11 79635359 79635481 -71148072 + ERVL LTR ERVL 3564 3686 -2078 1332 103 6 6 chr11 79635546 79635721 -71147832 + AluSx SINE Alu 1 175 -137 225 94 0 0 chr11 79635743 79635775 -71147778 + (A)n Simple_repeat Simple_repeat 1 32 0 2174 115 0 16 chr11 79635867 79636171 -71147382 - AluSx SINE Alu -9 303 5 800 169 0 0 chr11 79636404 79636528 -71147025 - FRAM SINE Alu -15 161 38 2231 96 10 3 chr11 79636590 79636883 -71146670 + AluSx SINE Alu 3 297 -15 427 267 35 0 chr11 79637014 79637130 -71146423 + L1ME4a LINE L1 6000 6119 -2 788 277 98 75 chr11 79637203 79637673 -71145880 + MLT1L LTR MaLR 135 615 0 1080 152 29 0 chr11 79638416 79638587 -71144966 + FRAM SINE Alu 1 176 0 918 94 6 19 chr11 79638601 79638760 -71144793 + (GGAGA)n Simple_repeat Simple_repeat 2 158 0 2096 115 3 10 chr11 79638904 79639199 -71144354 - AluSc SINE Alu -16 293 1 2275 118 0 0 chr11 79639555 79639861 -71143692 + AluSg SINE Alu 1 306 -4 1432 160 93 4 chr11 79640126 79640395 -71143158 + AluJo SINE Alu 1 293 -19 461 127 13 63 chr11 79640538 79640617 -71142936 + MER2 DNA MER2_type 20 94 -251 2070 98 41 14 chr11 79640618 79640913 -71142640 + AluSx SINE Alu 1 303 -9 1698 181 3 7 chr11 79641081 79641380 -71142173 + AluJo SINE Alu 1 298 -14 1293 210 40 118 chr11 79641438 79641516 -71142037 - MLT1H LTR MaLR -6 543 460 2249 108 3 0 chr11 79641516 79641812 -71141741 - AluSx SINE Alu -15 297 1 1293 210 40 118 chr11 79641812 79642310 -71141243 - MLT1H LTR MaLR -89 460 12 864 268 92 3 chr11 79642395 79642690 -71140863 + L2 LINE L2 2438 2758 -556 2051 80 8 8 chr11 79642750 79643012 -71140541 - AluSc SINE Alu -21 288 27 2195 199 68 11 chr11 79643012 79643480 -71140073 + LTR22 LTR ERVK 11 505 -4 323 71 0 0 chr11 79643485 79643527 -71140026 - AluSc SINE Alu -258 44 3 395 325 142 24 chr11 79643528 79643943 -71139610 + L2 LINE L2 2849 3312 -1 2186 135 0 0 chr11 79643962 79644265 -71139288 + AluSx SINE Alu 1 303 -9 1017 143 0 79 chr11 79644543 79644732 -71138821 + FRAM SINE Alu 1 174 -2 935 165 0 80 chr11 79645118 79645306 -71138247 + FRAM SINE Alu 1 173 -3 1329 170 24 77 chr11 79645348 79645424 -71138129 + Charlie4a DNA MER1_type 39 117 -1844 2430 84 58 103 chr11 79645424 79645806 -71137747 - LTR56 LTR ERV1 0 445 86 2475 93 3 0 chr11 79645806 79646117 -71137436 - AluSx SINE Alu 0 312 1 2430 84 58 103 chr11 79646117 79646200 -71137353 - LTR56 LTR ERV1 -359 86 1 1329 170 24 77 chr11 79646200 79646499 -71137054 + Charlie4a DNA MER1_type 117 394 -114 687 198 26 0 chr11 79646531 79646647 -71136906 + FLAM_C SINE Alu 3 121 -22 206 61 0 30 chr11 79646647 79646680 -71136873 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2439 177 11 2 chr11 79646684 79647119 -71136434 - MER65C LTR ERV1 -20 441 3 1767 149 0 68 chr11 79647164 79647487 -71136066 + AluJo SINE Alu 1 301 -11 997 116 9 10 chr11 79647506 79647676 -71135877 - L1M3 LINE L1 -424 5759 5592 2238 136 0 0 chr11 79648433 79648742 -71134811 + AluSx SINE Alu 1 309 -3 1907 159 0 53 chr11 79649165 79649486 -71134067 + AluJb SINE Alu 5 308 -4 197 310 35 0 chr11 79649857 79649915 -71133638 + L2 LINE L2 3193 3252 -20 2293 101 20 0 chr11 79650647 79650945 -71132608 - AluSq SINE Alu -9 304 1 869 220 150 55 chr11 79651022 79651496 -71132057 + MLT1H LTR MaLR 1 549 0 1951 238 67 8 chr11 79651653 79652132 -71131421 - MLT1J LTR MaLR 0 511 5 532 361 36 32 chr11 79652229 79652389 -71131164 - L1M4 LINE L1 -1519 4627 4464 2406 69 7 3 chr11 79652389 79652692 -71130861 - AluY SINE Alu -7 304 1 532 361 36 32 chr11 79652692 79652780 -71130773 - L1M4 LINE L1 -1682 4464 4378 207 0 0 0 chr11 79653084 79653107 -71130446 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2301 99 0 35 chr11 79653112 79653288 -71130265 - AluSq SINE Alu -10 303 141 2224 125 0 0 chr11 79653288 79653584 -71129969 - AluY SINE Alu -15 296 1 2301 99 0 35 chr11 79653584 79653721 -71129832 - AluSq SINE Alu -172 141 1 369 339 55 12 chr11 79653731 79653896 -71129657 - L1M4 LINE L1 -1828 4318 4147 272 311 67 8 chr11 79654041 79654160 -71129393 - MIR SINE MIR -76 186 61 720 91 0 0 chr11 79654358 79654457 -71129096 - Alu SINE Alu -2 308 210 2207 106 6 50 chr11 79654501 79654823 -71128730 - AluSx SINE Alu -4 308 1 986 180 23 0 chr11 79654960 79655132 -71128421 - FRAM SINE Alu 0 176 1 2236 135 0 0 chr11 79655734 79656046 -71127507 + AluSx SINE Alu 1 312 0 1987 160 30 38 chr11 79656293 79656693 -71126860 - MLT2C1 LTR ERVL 0 397 1 508 157 176 0 chr11 79656696 79656798 -71126755 - FRAM SINE Alu -53 123 4 22 35 0 0 chr11 79656803 79656832 -71126721 + AT_rich Low_complexity Low_complexity 1 29 0 2820 156 73 38 chr11 79656836 79656967 -71126586 + L1MB7 LINE L1 5271 5396 -782 2500 66 0 10 chr11 79656967 79657272 -71126281 + AluY SINE Alu 2 303 -8 2820 156 73 38 chr11 79657272 79657661 -71125892 + L1MB7 LINE L1 5396 5819 -359 1971 157 16 0 chr11 79657661 79657967 -71125586 + AluJo SINE Alu 1 311 -1 2820 156 73 38 chr11 79657967 79658072 -71125481 + L1MB7 LINE L1 5819 5919 -259 790 233 0 34 chr11 79658072 79658248 -71125305 - FRAM SINE Alu -6 170 1 745 140 13 51 chr11 79658250 79658370 -71125183 + L1MB7 LINE L1 5911 6025 -159 2434 100 3 0 chr11 79658370 79658681 -71124872 - AluSx SINE Alu 0 312 1 745 140 13 51 chr11 79658681 79658717 -71124836 + L1MB7 LINE L1 6025 6061 -123 2221 105 0 3 chr11 79658717 79659012 -71124541 + AluSg SINE Alu 1 294 -16 659 211 0 8 chr11 79659049 79659172 -71124381 + FLAM_A SINE Alu 2 123 -10 2734 151 124 112 chr11 79659173 79659263 -71124290 + Charlie1 DNA MER1_type 1606 1693 -1068 2369 96 0 0 chr11 79659263 79659556 -71123997 - AluSx SINE Alu -19 293 1 2734 151 124 112 chr11 79659556 79659915 -71123638 + Charlie1 DNA MER1_type 1693 2046 -715 1561 168 42 32 chr11 79659915 79660200 -71123353 + AluJb SINE Alu 1 288 -24 2734 151 124 112 chr11 79660200 79660223 -71123330 + Charlie1 DNA MER1_type 2046 2067 -694 1453 179 9 144 chr11 79660223 79660652 -71122901 + MLT1A2 LTR MaLR 4 374 0 2734 151 124 112 chr11 79660652 79660901 -71122652 + Charlie1 DNA MER1_type 2067 2312 -449 1061 110 30 80 chr11 79660901 79661101 -71122452 + MER30B DNA MER1_type 1 190 0 2734 151 124 112 chr11 79661101 79661154 -71122399 + Charlie1 DNA MER1_type 2312 2363 -398 2281 91 0 10 chr11 79661154 79661452 -71122101 + AluSg SINE Alu 1 295 -15 2734 151 124 112 chr11 79661452 79661625 -71121928 + Charlie1 DNA MER1_type 2363 2568 -193 1590 149 8 12 chr11 79661637 79661878 -71121675 + AluJo SINE Alu 9 248 -64 328 228 222 12 chr11 79661944 79662111 -71121442 + L1ME3A LINE L1 5800 6001 -169 28 0 0 0 chr11 79662179 79662207 -71121346 + AT_rich Low_complexity Low_complexity 1 28 0 238 311 19 57 chr11 79662228 79662334 -71121219 - MER5B DNA MER1_type -60 118 17 2133 122 7 3 chr11 79662372 79662667 -71120886 + AluSx SINE Alu 1 296 -16 410 259 108 88 chr11 79662708 79662959 -71120594 + MIR SINE MIR 2 257 -5 202 260 0 140 chr11 79662971 79663025 -71120528 + MIR SINE MIR 65 100 -162 1726 191 27 0 chr11 79663025 79663319 -71120234 - AluJo SINE Alu -10 302 1 202 260 0 140 chr11 79663319 79663364 -71120189 + MIR SINE MIR 100 150 -112 265 146 271 0 chr11 79664022 79664091 -71119462 + MER58 DNA MER1_type 1 70 -145 183 156 0 0 chr11 79664101 79664133 -71119420 + GA-rich Low_complexity Low_complexity 3 34 0 239 319 11 32 chr11 79664137 79664231 -71119322 + G-rich Low_complexity Low_complexity 4 95 0 546 132 175 26 chr11 79664282 79664396 -71119157 + FLAM_C SINE Alu 2 132 -1 278 280 50 40 chr11 79664909 79665009 -71118544 + MIR SINE MIR 51 151 -57 493 235 175 22 chr11 79665207 79665390 -71118163 - MIR SINE MIR -3 259 49 1640 169 14 7 chr11 79665623 79665907 -71117646 - AluJo SINE Alu -26 286 1 439 152 0 0 chr11 79665945 79666024 -71117529 - L1MB4 LINE L1 -34 6146 6068 1998 110 40 0 chr11 79666038 79666337 -71117216 - AluSq SINE Alu 0 310 1 246 271 57 29 chr11 79666352 79666422 -71117131 - MIR SINE MIR -103 105 34 2260 95 10 3 chr11 79669246 79669550 -71114003 - AluSp SINE Alu -7 306 1 23 33 0 0 chr11 79669614 79669644 -71113909 + AT_rich Low_complexity Low_complexity 1 30 0 213 214 22 11 chr11 79670471 79670560 -71112993 + CT-rich Low_complexity Low_complexity 1 90 0 296 364 105 0 chr11 79671771 79671933 -71111620 + L2 LINE L2 2985 3163 -109 264 297 135 0 chr11 79672600 79672726 -71110827 + MIR SINE MIR 47 192 -70 633 270 7 0 chr11 79672739 79672876 -71110677 - MER5B DNA MER1_type 0 178 41 547 265 122 16 chr11 79672886 79673075 -71110478 + MIR SINE MIR 26 234 -28 298 79 0 0 chr11 79673230 79673268 -71110285 - tRNA-Lys-AAG tRNA tRNA -38 38 1 226 210 170 90 chr11 79673325 79673425 -71110128 - MIR SINE MIR -67 141 34 334 293 30 150 chr11 79673794 79674194 -71109359 + L2 LINE L2 2897 3248 -24 1765 166 10 51 chr11 79674553 79674866 -71108687 + AluJb SINE Alu 1 300 -12 275 250 143 0 chr11 79674965 79675049 -71108504 - L2 LINE L2 -9 3263 3168 1133 186 65 0 chr11 79675515 79675730 -71107823 + AluJo SINE Alu 1 229 -83 1695 147 35 25 chr11 79675730 79676015 -71107538 + AluJb SINE Alu 23 310 -2 252 323 11 11 chr11 79677306 79677399 -71106154 - MIR3 SINE MIR -15 193 101 371 283 125 0 chr11 79677901 79678021 -71105532 - MIR SINE MIR -14 248 114 * 822 261 91 70 chr11 79678020 79678602 -71104951 - L2 LINE L2 0 3272 2673 355 288 85 33 chr11 79678667 79678879 -71104674 - L2 LINE L2 -613 2701 2479 585 229 10 80 chr11 79679053 79679254 -71104299 - MIR SINE MIR -33 229 43 220 306 141 28 chr11 79679385 79679633 -71103920 - L2 LINE L2 -433 2881 2606 457 323 47 77 chr11 79680665 79681067 -71102486 + L2 LINE L2 2873 3262 -10 238 228 109 33 chr11 79681195 79681287 -71102266 + L2 LINE L2 3134 3232 -40 232 259 77 141 chr11 79681360 79681502 -71102051 - MER5B DNA MER1_type 0 178 47 1927 127 39 11 chr11 79681502 79681785 -71101768 + AluSg SINE Alu 1 291 -19 232 259 77 141 chr11 79681785 79681812 -71101741 - MER5B DNA MER1_type -131 47 20 272 281 0 0 chr11 79681878 79681942 -71101611 - MIR SINE MIR -143 119 56 328 275 225 68 chr11 79682624 79682904 -71100649 - L2 LINE L2 -8 3264 2941 443 298 22 17 chr11 79682936 79683114 -71100439 + L2 LINE L2 1758 1936 -1378 2093 161 0 0 chr11 79683237 79683548 -71100005 - AluJo SINE Alu -1 311 1 2121 90 0 8 chr11 79683606 79683872 -71099681 + AluSq SINE Alu 34 297 -16 371 349 116 33 chr11 79684106 79684407 -71099146 - L2 LINE L2 -1 3271 2946 268 273 141 23 chr11 79684415 79684543 -71099010 + MIR SINE MIR 110 252 -10 1268 113 48 151 chr11 79684559 79684930 -71098623 + MER7A DNA MER2_type 16 346 0 273 318 104 7 chr11 79687526 79687674 -71095879 + MIR3 SINE MIR 12 175 -33 544 290 153 23 chr11 79687866 79688218 -71095335 - MLT1K LTR MaLR -8 580 183 474 265 78 90 chr11 79688368 79688689 -71094864 - L2 LINE L2 -125 3147 2831 655 138 7 33 chr11 79688990 79689142 -71094411 + CT-rich Low_complexity Low_complexity 2 149 0 618 86 54 0 chr11 79689144 79689237 -71094316 - HY1 scRNA scRNA -14 98 1 453 320 79 6 chr11 79689528 79689706 -71093847 - MIR SINE MIR -34 228 38 180 179 0 0 chr11 79689922 79689961 -71093592 + (TG)n Simple_repeat Simple_repeat 2 40 0 184 353 81 37 chr11 79690212 79690348 -71093205 - L2 LINE L2 -464 2850 2709 180 316 101 38 chr11 79690699 79690857 -71092696 - L3 LINE CR1 -75 1502 1335 2329 101 0 0 chr11 79691177 79691474 -71092079 + AluSx SINE Alu 1 297 -15 339 250 13 0 chr11 79692097 79692173 -71091380 + Charlie8 DNA MER1_type 16 92 -2325 570 261 158 33 chr11 79692178 79692516 -71091037 + L1ME2 LINE L1 5466 5864 -300 276 247 48 90 chr11 79692504 79692670 -71090883 + L1MEc LINE L1 1910 2068 -4328 * 1405 138 26 0 chr11 79692670 79692902 -71090651 + L1MC3 LINE L1 6448 6685 -1100 2248 101 3 3 chr11 79692911 79693207 -71090346 + AluSx SINE Alu 1 296 -16 1150 124 0 19 chr11 79693207 79693368 -71090185 + AluSg/x SINE Alu 135 292 -20 2369 82 7 0 chr11 79693658 79693961 -71089592 + AluY SINE Alu 1 305 -6 1017 164 0 6 chr11 79693961 79694127 -71089426 + AluSg/x SINE Alu 132 296 -14 640 107 58 189 chr11 79694128 79694182 -71089371 - Tigger2 DNA MER2_type -1542 1176 1117 2093 125 0 0 chr11 79694182 79694462 -71089091 - AluSg SINE Alu -30 280 1 640 107 58 189 chr11 79694462 79694613 -71088940 - Tigger2 DNA MER2_type -1601 1117 998 2109 112 3 11 chr11 79694618 79694940 -71088613 + AluSx SINE Alu 1 320 0 2212 84 11 3 chr11 79695261 79695547 -71088006 - AluSx SINE Alu -9 303 16 2264 101 0 10 chr11 79696085 79696392 -71087161 - AluY SINE Alu -7 304 1 598 202 17 8 chr11 79696573 79696692 -71086861 + FRAM SINE Alu 48 167 -9 764 113 32 24 chr11 79696696 79696820 -71086733 + AluJb SINE Alu 2 126 -186 682 238 162 36 chr11 79696957 79697317 -71086236 + L1ME3 LINE L1 5757 6161 -9 289 165 165 33 chr11 79697384 79697475 -71086078 + L1MD3 LINE L1 7493 7595 -400 2266 108 0 0 chr11 79697494 79697791 -71085762 - AluSx SINE Alu -15 297 1 1888 113 56 25 chr11 79697855 79698139 -71085414 - MER1B DNA MER1_type -1 338 46 742 156 170 0 chr11 79698215 79698356 -71085197 - MER46A DNA MER2_type 0 236 72 230 111 0 0 chr11 79699320 79699356 -71084197 - L1MB8 LINE L1 -18 6160 6125 464 227 21 21 chr11 79699373 79699470 -71084083 - AluJb SINE Alu -61 251 155 2191 129 0 0 chr11 79699512 79699815 -71083738 + AluSx SINE Alu 1 303 -9 2219 131 0 6 chr11 79699873 79700187 -71083366 + AluSx SINE Alu 1 312 0 1104 172 6 0 chr11 79700193 79700373 -71083180 + AluJb SINE Alu 132 312 0 719 254 17 30 chr11 79700383 79700572 -71082981 + L1M4 LINE L1 2729 2916 -3230 1719 160 25 4 chr11 79700572 79700853 -71082700 + AluJo SINE Alu 1 287 -25 719 254 17 30 chr11 79700853 79700899 -71082654 + L1M4 LINE L1 2916 2961 -3185 696 189 177 6 chr11 79700903 79701078 -71082475 + L1MB7 LINE L1 5706 5910 -268 2448 57 7 13 chr11 79701079 79701378 -71082175 + AluSg SINE Alu 2 298 -12 349 198 35 0 chr11 79701395 79701481 -71082072 + L1MB7 LINE L1 6096 6184 0 223 28 56 0 chr11 79701515 79701551 -71082002 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 723 188 0 0 chr11 79701555 79701672 -71081881 - FLAM_C SINE Alu -25 118 2 419 102 0 0 chr11 79701674 79701733 -71081820 + L1MB3 LINE L1 6083 6141 -42 1239 226 23 20 chr11 79701733 79702034 -71081519 + AluJo SINE Alu 1 302 -10 1698 143 4 4 chr11 79702061 79702313 -71081240 + AluSx SINE Alu 34 285 -27 255 31 0 0 chr11 79702313 79702345 -71081208 + (CTAAA)n Simple_repeat Simple_repeat 3 34 0 1676 135 97 21 chr11 79702351 79702640 -71080913 + AluSx SINE Alu 1 311 -1 1646 100 17 8 chr11 79702751 79702992 -71080561 - AluSx SINE Alu -69 243 1 1732 144 40 67 chr11 79702994 79703369 -71080184 + L1MC1 LINE L1 5601 5965 -368 490 144 33 0 chr11 79703392 79703482 -71080071 - L1MC1 LINE L1 0 6333 6241 21 71 0 0 chr11 79703512 79703554 -71079999 + AT_rich Low_complexity Low_complexity 1 42 0 2266 115 0 7 chr11 79703554 79703879 -71079674 + AluSx SINE Alu 1 312 0 666 149 0 9 chr11 79703879 79703986 -71079567 - AluJo/FLAM SINE Alu -200 112 7 2182 113 10 0 chr11 79704084 79704384 -71079169 + AluSp SINE Alu 1 303 -10 2058 112 29 29 chr11 79704576 79704889 -71078664 + AluSq SINE Alu 1 313 0 782 207 61 0 chr11 79705034 79705198 -71078355 + AluJb SINE Alu 136 309 -3 1801 160 26 26 chr11 79705485 79705611 -71077942 + AluJb SINE Alu 1 126 -186 2488 74 0 0 chr11 79705611 79705910 -71077643 + AluY SINE Alu 1 299 -12 1801 160 26 26 chr11 79705910 79706095 -71077458 + AluJb SINE Alu 125 312 0 2494 70 3 0 chr11 79706249 79706547 -71077006 + AluSc SINE Alu 1 299 -10 200 197 66 66 chr11 79706783 79706844 -71076709 + L2 LINE L2 3173 3233 -39 2093 130 7 16 chr11 79707016 79707150 -71076403 + AluSx SINE Alu 1 135 -177 1830 123 0 4 chr11 79707150 79707401 -71076152 + AluSx SINE Alu 49 298 -14 2093 130 7 16 chr11 79707401 79707574 -71075979 + AluSx SINE Alu 135 305 -7 606 102 42 59 chr11 79707614 79707732 -71075821 + FLAM_A SINE Alu 17 132 -10 948 190 11 17 chr11 79707892 79708071 -71075482 + AluJo SINE Alu 113 290 -22 1252 190 48 22 chr11 79708071 79708340 -71075213 + AluJo SINE Alu 31 306 -6 572 203 36 14 chr11 79708348 79708486 -71075067 + MIR SINE MIR 34 174 -88 901 165 57 0 chr11 79708486 79708644 -71074909 - AluSg/x SINE Alu -9 303 137 3342 208 64 29 chr11 79708662 79708762 -71074791 - L1MC4a LINE L1 -1 7807 7712 1902 81 47 51 chr11 79708762 79709058 -71074495 - AluSg SINE Alu -15 295 1 3342 208 64 29 chr11 79709058 79709783 -71073770 - L1MC4a LINE L1 -96 7712 7013 539 191 0 0 chr11 79709987 79710076 -71073477 + FRAM SINE Alu 69 157 -19 296 295 9 18 chr11 79710122 79710234 -71073319 + L1MC5 LINE L1 7805 7915 -46 2073 148 0 0 chr11 79710396 79710699 -71072854 + AluSx SINE Alu 1 303 -9 2350 91 32 32 chr11 79710699 79711071 -71072482 + L1PB1 LINE L1 5777 6148 -3 1590 175 3 60 chr11 79711115 79711429 -71072124 + AluJo SINE Alu 1 296 -16 764 186 0 0 chr11 79711432 79711550 -71072003 + FLAM_A SINE Alu 1 118 -15 27 0 0 0 chr11 79711568 79711595 -71071958 + AT_rich Low_complexity Low_complexity 1 27 0 1357 108 33 58 chr11 79711803 79711901 -71071652 - L1MB3 LINE L1 -267 5916 5817 1924 149 0 23 chr11 79711901 79712209 -71071344 - AluSx SINE Alu -11 301 1 1357 108 33 58 chr11 79712209 79712351 -71071202 - L1MB3 LINE L1 -366 5817 5682 1752 153 47 4 chr11 79712378 79712653 -71070900 - AluJo SINE Alu -21 291 5 932 165 30 0 chr11 79712686 79712850 -71070703 + FAM SINE Alu 1 169 -6 1913 260 94 50 chr11 79712912 79713729 -71069824 + HAL1 LINE L1 152 932 -1575 1950 154 10 0 chr11 79713729 79714021 -71069532 + AluSx SINE Alu 1 295 -17 1913 260 94 50 chr11 79714021 79714092 -71069461 + HAL1 LINE L1 932 998 -1509 1783 172 3 3 chr11 79714092 79714388 -71069165 + AluSx SINE Alu 6 301 -11 1913 260 94 50 chr11 79714388 79714522 -71069031 + HAL1 LINE L1 998 1220 -1287 1110 201 41 30 chr11 79714522 79714791 -71068762 + AluJo SINE Alu 1 272 -40 1569 88 17 55 chr11 79714822 79714982 -71068571 - AluSx SINE Alu -83 229 79 2580 59 0 0 chr11 79714982 79715287 -71068266 + AluY SINE Alu 2 306 -5 1569 88 17 55 chr11 79715287 79715364 -71068189 - AluSx SINE Alu -233 79 1 567 247 67 59 chr11 79715517 79715756 -71067797 - MIR SINE MIR -10 252 12 1483 168 69 39 chr11 79715852 79716186 -71067367 + Charlie1b DNA MER1_type 1 344 -179 1424 150 9 5 chr11 79716188 79716401 -71067152 + AluSx SINE Alu 1 214 -98 24 0 0 51 chr11 79716466 79716485 -71067068 + AT_rich Low_complexity Low_complexity 1 19 -18 2356 87 0 0 chr11 79716485 79716772 -71066781 - AluSg SINE Alu -23 287 1 24 0 0 51 chr11 79716772 79716791 -71066762 + AT_rich Low_complexity Low_complexity 19 37 0 892 135 0 0 chr11 79716791 79716917 -71066636 - AluJb SINE Alu -186 126 1 1393 86 11 16 chr11 79716984 79717171 -71066382 + AluSq SINE Alu 1 186 -127 1936 110 0 0 chr11 79717272 79717527 -71066026 + AluSq SINE Alu 49 303 -10 2461 81 7 0 chr11 79718059 79718368 -71065185 + AluY SINE Alu 1 311 0 3266 93 5 2 chr11 79718415 79718846 -71064707 + MSTB1 LTR MaLR 1 432 0 1533 147 21 36 chr11 79719341 79719417 -71064136 - Charlie5 DNA MER1_type -20 2604 2528 2277 106 0 0 chr11 79719417 79719709 -71063844 - AluSg SINE Alu -14 296 5 1533 147 21 36 chr11 79719709 79719966 -71063587 - Charlie5 DNA MER1_type -96 2528 2276 457 224 81 8 chr11 79720411 79720569 -71062984 + MIR SINE MIR 34 203 -59 265 250 141 51 chr11 79720615 79720753 -71062800 - MIR SINE MIR -65 143 32 1839 154 48 0 chr11 79723159 79723452 -71060101 + AluJo SINE Alu 1 307 -5 2203 121 3 13 chr11 79723706 79724021 -71059532 + AluJb SINE Alu 1 312 0 231 200 57 14 chr11 79724185 79724255 -71059298 - MIR SINE MIR -11 251 179 2309 71 4 7 chr11 79724319 79724626 -71058927 - AluY SINE Alu 0 306 1 443 281 104 18 chr11 79724626 79724904 -71058649 - L1ME4a LINE L1 -227 5894 5593 29 28 0 0 chr11 79725022 79725058 -71058495 + AT_rich Low_complexity Low_complexity 1 36 0 2460 93 0 0 chr11 79725121 79725432 -71058121 + AluSq SINE Alu 1 311 -2 1096 186 0 0 chr11 79725447 79725619 -71057934 + AluJo SINE Alu 5 176 -136 727 214 0 0 chr11 79725638 79725769 -71057784 - FLAM_C SINE Alu -2 131 1 1211 191 9 9 chr11 79725889 79726109 -71057444 + AluJo SINE Alu 1 220 -92 362 82 0 0 chr11 79726109 79726158 -71057395 + AluSq/x SINE Alu 86 134 -169 1162 56 0 0 chr11 79726160 79726302 -71057251 + L1PA4 LINE L1 6005 6146 -9 27 0 0 0 chr11 79726315 79726342 -71057211 + AT_rich Low_complexity Low_complexity 1 27 0 1361 161 22 101 chr11 79726343 79726659 -71056894 + AluJo SINE Alu 1 291 -21 267 218 195 0 chr11 79726726 79726813 -71056740 - L2 LINE L2 -19 3294 3191 414 214 79 45 chr11 79726831 79727009 -71056544 - L2 LINE L2 -802 2512 2329 1712 183 7 13 chr11 79727491 79727792 -71055761 + AluJo SINE Alu 1 299 -13 216 204 0 0 chr11 79727919 79727963 -71055590 + T-rich Low_complexity Low_complexity 1 44 0 7062 52 9 38 chr11 79727963 79728937 -71054616 - SVA Other Other 0 1386 441 5388 69 36 94 chr11 79728962 79729859 -71053694 - SVA Other Other -520 866 22 245 246 16 0 chr11 79730110 79730171 -71053382 + G-rich Low_complexity Low_complexity 4 65 0 283 222 0 0 chr11 79730405 79730459 -71053094 - MIR SINE MIR -59 149 96 2498 55 0 0 chr11 79730474 79730766 -71052787 + AluSc SINE Alu 1 292 -17 926 220 12 0 chr11 79731665 79731838 -71051715 + FAM SINE Alu 1 175 0 2210 122 0 0 chr11 79731920 79732215 -71051338 - AluSg SINE Alu -15 295 1 183 42 0 0 chr11 79732947 79732971 -71050582 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1882 126 11 0 chr11 79732974 79733244 -71050309 - AluSq SINE Alu -40 273 1 232 253 30 71 chr11 79734023 79734122 -71049431 - L1MDa LINE L1 -5545 995 901 954 305 60 10 chr11 79734431 79734560 -71048993 - L1MDa LINE L1 -6120 420 299 180 0 0 0 chr11 79734560 79734580 -71048973 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 954 305 60 10 chr11 79734580 79734834 -71048719 - L1MDa LINE L1 -6241 299 18 1011 159 0 0 chr11 79734898 79735121 -71048432 + (TA)n Simple_repeat Simple_repeat 1 223 0 1674 170 22 0 chr11 79735122 79735392 -71048161 - AluJo SINE Alu -36 276 1 2057 107 18 0 chr11 79735474 79735780 -71047773 - AluSx SINE Alu 0 311 1 1178 69 223 0 chr11 79736538 79736726 -71046827 + MER30 DNA MER1_type 1 230 0 734 197 0 0 chr11 79736783 79736915 -71046638 - FLAM_A SINE Alu -1 132 1 1809 165 15 36 chr11 79737339 79737402 -71046151 - L1MC1 LINE L1 -5 6328 6265 2263 112 0 7 chr11 79737402 79737707 -71045846 + AluSg SINE Alu 1 303 -7 1809 165 15 36 chr11 79737707 79737976 -71045577 - L1MC1 LINE L1 -68 6265 6003 1189 183 0 10 chr11 79737976 79738178 -71045375 - AluJo SINE Alu -112 200 1 1345 281 111 64 chr11 79738207 79738317 -71045236 + L2 LINE L2 1798 1901 -1412 2068 119 0 32 chr11 79738317 79738628 -71044925 - AluSx SINE Alu -11 301 1 1345 281 111 64 chr11 79738628 79739575 -71043978 + L2 LINE L2 1901 2935 -378 2029 128 7 10 chr11 79739575 79739871 -71043682 - AluSx SINE Alu -17 295 1 1345 281 111 64 chr11 79739871 79739991 -71043562 + L2 LINE L2 2935 3048 -265 927 150 0 0 chr11 79740007 79740134 -71043419 + FLAM_C SINE Alu 1 127 -16 325 272 148 35 chr11 79740213 79740382 -71043171 + L2 LINE L2 3097 3284 -29 192 77 0 0 chr11 79740387 79740413 -71043140 + (A)n Simple_repeat Simple_repeat 1 26 0 293 179 0 0 chr11 79740413 79740469 -71043084 + L2 LINE L2 3258 3313 0 204 264 97 0 chr11 79740483 79740555 -71042998 + L2 LINE L2 3191 3269 -44 921 184 25 0 chr11 79740599 79740762 -71042791 + FAM SINE Alu 1 167 -8 238 167 0 0 chr11 79740802 79740844 -71042709 - L1ME1 LINE L1 -5 6161 6120 368 231 22 0 chr11 79740888 79740979 -71042574 - L1ME1 LINE L1 -29 6137 6045 2162 107 10 29 chr11 79741389 79741698 -71041855 - AluSx SINE Alu -9 303 1 325 200 158 42 chr11 79741748 79741868 -71041685 + MIR SINE MIR 57 190 -72 331 267 19 0 chr11 79741875 79741980 -71041573 + MIR3 SINE MIR 81 187 -21 1635 159 21 31 chr11 79742019 79742308 -71041245 + AluJb SINE Alu 3 288 -24 21 36 0 0 chr11 79742742 79742770 -71040783 + AT_rich Low_complexity Low_complexity 1 28 0 2374 102 0 0 chr11 79743708 79744012 -71039541 - AluSg SINE Alu -6 304 1 205 354 13 76 chr11 79744187 79744283 -71039270 - L2 LINE L2 -1 3271 3187 2365 97 3 0 chr11 79744283 79744581 -71038972 + AluSx SINE Alu 1 299 -13 205 354 13 76 chr11 79744581 79744642 -71038911 - L2 LINE L2 -85 3187 3124 198 0 0 0 chr11 79745046 79745068 -71038485 + (T)n Simple_repeat Simple_repeat 1 22 0 1047 61 0 0 chr11 79745153 79745284 -71038269 - AluY SINE Alu -4 307 177 231 330 161 0 chr11 79745855 79745967 -71037586 + L2 LINE L2 3104 3233 -39 190 329 35 88 chr11 79745971 79746141 -71037412 - L2 LINE L2 -97 3175 3015 202 260 0 0 chr11 79746244 79746294 -71037259 - L2 LINE L2 -13 3259 3210 486 289 35 0 chr11 79746495 79746637 -71036916 - MLT1L LTR MaLR 0 615 469 945 188 123 31 chr11 79746647 79746908 -71036645 + L1MD3 LINE L1 7707 7991 -4 27 51 0 17 chr11 79746908 79746936 -71036617 + AT_rich Low_complexity Low_complexity 1 28 -30 1982 138 14 0 chr11 79746936 79747219 -71036334 + AluJo SINE Alu 1 287 -25 27 51 0 17 chr11 79747219 79747249 -71036304 + AT_rich Low_complexity Low_complexity 28 58 0 * 330 187 0 67 chr11 79747235 79747255 -71036298 + AluSg/x SINE Alu 119 133 -167 2131 132 3 13 chr11 79747255 79747566 -71035987 + AluSx SINE Alu 1 308 -4 502 118 0 0 chr11 79747573 79747641 -71035912 + AluS SINE Alu 5 72 -241 2155 132 0 0 chr11 79747702 79747998 -71035555 + AluSx SINE Alu 1 296 -16 566 271 78 63 chr11 79748979 79749218 -71034335 + L3 LINE CR1 1277 1522 -55 2674 49 0 0 chr11 79749218 79749522 -71034031 + AluY SINE Alu 1 304 -7 566 271 78 63 chr11 79749522 79749566 -71033987 + L3 LINE CR1 1522 1564 -13 567 259 38 24 chr11 79749626 79749838 -71033715 - L1MC5 LINE L1 -51 7910 7696 371 246 102 8 chr11 79750091 79750209 -71033344 + L1ME4a LINE L1 5978 6106 -15 1328 113 0 16 chr11 79750209 79750403 -71033150 - AluSg/x SINE Alu -2 310 120 270 0 0 0 chr11 79750688 79750718 -71032835 + (CA)n Simple_repeat Simple_repeat 2 31 0 417 215 18 98 chr11 79750733 79750862 -71032691 - MER117 DNA MER1_type -44 153 38 2248 100 31 0 chr11 79750862 79751152 -71032401 + AluSq SINE Alu 1 299 -14 417 215 18 98 chr11 79751152 79751185 -71032368 - MER117 DNA MER1_type -159 38 4 2386 95 0 13 chr11 79751560 79751865 -71031688 + AluSx SINE Alu 1 301 -11 1896 138 0 30 chr11 79751876 79752173 -71031380 + AluJb SINE Alu 13 300 -12 184 256 122 12 chr11 79752175 79752257 -71031296 + MIR SINE MIR 63 153 -109 252 281 34 22 chr11 79752377 79752466 -71031087 - MIR SINE MIR -36 226 137 2225 62 33 0 chr11 79752786 79753088 -71030465 - AluSp SINE Alu 0 311 1 2185 85 27 3 chr11 79753125 79753418 -71030135 + AluY SINE Alu 1 300 -11 388 252 153 0 chr11 79753452 79753563 -71029990 - MIR SINE MIR -115 147 20 502 229 57 0 chr11 79754579 79754684 -71028869 + MER81 DNA DNA 4 114 0 1034 183 21 5 chr11 79754723 79754909 -71028644 + MER5A DNA MER1_type 1 189 0 276 299 30 22 chr11 79754983 79755117 -71028436 - L2 LINE L2 -465 2849 2715 280 200 173 40 chr11 79755121 79755271 -71028282 - L1MC4a LINE L1 -1873 5935 5766 180 296 0 0 chr11 79755290 79755334 -71028219 - L2 LINE L2 -223 3049 3006 715 213 85 0 chr11 79755402 79755566 -71027987 - AluSg/x SINE Alu -10 302 125 293 352 11 11 chr11 79755772 79755951 -71027602 + CT-rich Low_complexity Low_complexity 2 180 0 321 271 159 0 chr11 79756142 79756249 -71027304 + MIR SINE MIR 24 147 -115 2313 102 0 13 chr11 79756284 79756587 -71026966 - AluSx SINE Alu -13 299 1 417 215 18 98 chr11 79756962 79756995 -71026558 + MER117 DNA MER1_type 4 38 -159 2248 100 31 0 chr11 79756995 79757285 -71026268 - AluSq SINE Alu -14 299 1 417 215 18 98 chr11 79757285 79757414 -71026139 + MER117 DNA MER1_type 38 153 -44 216 0 0 0 chr11 79757429 79757453 -71026100 + (TG)n Simple_repeat Simple_repeat 2 25 0 1328 113 0 16 chr11 79757738 79757932 -71025621 + AluSg/x SINE Alu 118 308 -2 371 246 102 8 chr11 79757932 79758050 -71025503 - L1ME4a LINE L1 -15 6106 5978 567 259 38 24 chr11 79758303 79758515 -71025038 + L1MC5 LINE L1 7696 7910 -51 2835 10 0 0 chr11 79758619 79758922 -71024631 - AluYa5 SINE Alu -8 303 1 257 139 0 0 chr11 79758938 79758974 -71024579 - AluSp SINE Alu -132 171 136 2310 107 7 0 chr11 79759911 79760221 -71023332 + AluSx SINE Alu 1 312 0 432 134 15 0 chr11 79760355 79760422 -71023131 - AluS SINE Alu -242 70 3 2193 111 0 17 chr11 79760542 79760839 -71022714 + AluSg SINE Alu 1 292 -18 2682 24 0 0 chr11 79760841 79761133 -71022420 + AluYa5 SINE Alu 17 308 -3 1685 134 41 35 chr11 79761476 79761766 -71021787 - AluJo SINE Alu -20 292 1 198 337 31 20 chr11 79761841 79761939 -71021614 + L2 LINE L2 1128 1226 -2088 1599 157 69 19 chr11 79762035 79762184 -71021369 + L1MB7 LINE L1 5713 5853 -331 1891 125 14 24 chr11 79762184 79762471 -71021082 + AluSx SINE Alu 21 304 -8 1599 157 69 19 chr11 79762471 79762640 -71020913 + L1MB7 LINE L1 5853 6047 -137 1498 170 20 20 chr11 79762736 79762855 -71020698 + AluSq SINE Alu 11 129 -184 1465 160 0 4 chr11 79762855 79763080 -71020473 + AluJo SINE Alu 72 295 -17 2331 80 0 3 chr11 79763082 79763371 -71020182 + AluY SINE Alu 1 288 -23 1498 170 20 20 chr11 79763371 79763583 -71019970 + AluSq SINE Alu 129 313 0 2077 96 7 11 chr11 79763676 79763805 -71019748 + AluY SINE Alu 4 132 -179 2277 98 3 23 chr11 79763805 79764111 -71019442 + AluSp SINE Alu 2 301 -12 2077 96 7 11 chr11 79764111 79764290 -71019263 + AluY SINE Alu 132 311 0 225 0 0 0 chr11 79764323 79764348 -71019205 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2012 132 3 7 chr11 79764400 79764688 -71018865 + AluSx SINE Alu 1 287 -25 2160 116 0 3 chr11 79764960 79765271 -71018282 - AluSq SINE Alu 0 313 1 1434 98 0 20 chr11 79765271 79765474 -71018079 - AluY SINE Alu -1 310 112 471 117 0 39 chr11 79765488 79765565 -71017988 - AluJ/FRAM SINE Alu -13 299 226 204 200 0 0 chr11 79765654 79765699 -71017854 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 231 221 15 29 chr11 79765710 79765778 -71017775 - AluJ/FRAM SINE Alu -8 294 228 1138 200 78 4 chr11 79765782 79766027 -71017526 - AluJo SINE Alu -49 263 1 1941 146 0 27 chr11 79766100 79766401 -71017152 - AluJb SINE Alu -19 293 1 223 343 60 57 chr11 79766616 79766864 -71016689 - L2 LINE L2 -844 2470 2222 203 260 83 0 chr11 79767488 79767584 -71015969 - MIR SINE MIR -13 249 146 181 267 27 40 chr11 79767978 79768053 -71015500 + L2 LINE L2 3236 3309 -4 2258 108 3 0 chr11 79768086 79768381 -71015172 - AluSx SINE Alu -16 296 1 912 148 35 12 chr11 79769831 79770000 -71013553 - AluJb SINE Alu -4 308 136 217 294 109 33 chr11 79770014 79770106 -71013447 - MIR SINE MIR -91 117 19 243 261 0 45 chr11 79770151 79770239 -71013314 + L2 LINE L2 2731 2814 -500 700 296 79 35 chr11 79770344 79770662 -71012891 + L2 LINE L2 2939 3270 -2 2098 129 0 3 chr11 79770976 79771278 -71012275 - AluSg SINE Alu -9 301 1 1712 167 7 40 chr11 79771345 79771510 -71012043 - AluJo SINE Alu -23 289 137 2194 114 7 7 chr11 79771510 79771818 -71011735 - AluSp SINE Alu -5 308 1 1712 167 7 40 chr11 79771818 79771951 -71011602 - AluJo SINE Alu -175 137 1 243 250 113 24 chr11 79772082 79772164 -71011389 - L2 LINE L2 -2 3270 3172 1414 143 101 39 chr11 79772164 79772450 -71011103 + AluJb SINE Alu 1 304 -8 243 250 113 24 chr11 79772450 79772491 -71011062 - L2 LINE L2 -100 3172 3136 22 0 0 0 chr11 79773181 79773203 -71010350 + AT_rich Low_complexity Low_complexity 1 22 0 882 167 56 12 chr11 79773321 79773483 -71010070 - AluJb SINE Alu -12 300 132 349 265 90 18 chr11 79773576 79773742 -71009811 + Charlie8 DNA MER1_type 81 258 -2159 2293 107 0 3 chr11 79773790 79774088 -71009465 - AluSx SINE Alu -13 299 3 1549 139 12 24 chr11 79774398 79774650 -71008903 + AluSx SINE Alu 44 292 -20 2036 113 28 17 chr11 79774778 79775069 -71008484 + AluSx SINE Alu 4 297 -15 909 137 15 0 chr11 79775142 79775273 -71008280 - FLAM_C SINE Alu -10 133 1 278 226 36 24 chr11 79775291 79775375 -71008178 + L1ME2 LINE L1 5678 5762 -2046 190 260 40 0 chr11 79775736 79775786 -71007767 - MIR SINE MIR -208 54 3 473 183 57 148 chr11 79775789 79776018 -71007535 + MIR SINE MIR 53 260 -2 2460 74 14 0 chr11 79777400 79777696 -71005857 + AluSq SINE Alu 1 300 -13 385 269 39 0 chr11 79777779 79777883 -71005670 + MIR3 SINE MIR 65 172 -36 227 254 136 0 chr11 79777875 79777934 -71005619 - MIR SINE MIR -112 96 30 * 1202 172 44 93 chr11 79778035 79778217 -71005336 + L1ME2 LINE L1 5817 5974 -190 2078 77 0 103 chr11 79778217 79778529 -71005024 + AluSg SINE Alu 1 280 -30 1202 172 44 93 chr11 79778529 79778712 -71004841 + L1ME2 LINE L1 5974 6164 0 187 259 0 19 chr11 79778824 79778878 -71004675 - MIR SINE MIR -112 150 98 324 318 78 42 chr11 79779307 79779499 -71004054 + MIR3 SINE MIR 7 205 -3 423 228 0 0 chr11 79779627 79779706 -71003847 - MER58 DNA MER1_type -77 264 186 481 148 0 45 chr11 79779717 79779805 -71003748 + L1MB5 LINE L1 6055 6138 -36 2452 83 0 0 chr11 79779805 79780107 -71003446 + AluSq SINE Alu 1 302 -11 1256 86 0 6 chr11 79780107 79780269 -71003284 + AluSg/x SINE Alu 137 297 -15 266 268 0 0 chr11 79780317 79780373 -71003180 - MER58 DNA MER1_type -330 56 1 325 325 45 32 chr11 79780419 79780573 -71002980 - L3 LINE CR1 -91 1486 1331 1646 139 37 44 chr11 79780720 79780895 -71002658 - AluJo SINE Alu -20 292 118 2494 77 0 0 chr11 79780895 79781193 -71002360 + AluY SINE Alu 1 298 -13 1646 139 37 44 chr11 79781193 79781311 -71002242 - AluJo SINE Alu -194 118 1 269 353 66 22 chr11 79781794 79781930 -71001623 - L2 LINE L2 -2 3270 3129 1658 159 11 22 chr11 79783071 79783348 -71000205 - AluJo SINE Alu -34 278 5 2192 110 0 16 chr11 79783361 79783536 -71000017 - AluSx SINE Alu -6 306 137 2473 84 3 0 chr11 79783536 79783845 -70999708 - AluSp SINE Alu -3 310 1 2192 110 0 16 chr11 79783845 79783978 -70999575 - AluSx SINE Alu -175 137 3 190 331 35 70 chr11 79784093 79784265 -70999288 - L2 LINE L2 -165 3107 2942 2185 103 3 0 chr11 79784317 79784599 -70998954 + AluSp SINE Alu 1 283 -30 190 0 67 0 chr11 79784602 79784632 -70998921 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr11 79784765 79784786 -70998767 + AT_rich Low_complexity Low_complexity 1 21 0 1939 165 53 8 chr11 79784893 79785287 -70998266 + L1MB8 LINE L1 5762 6173 -5 210 234 43 0 chr11 79785419 79785466 -70998087 - L2 LINE L2 -559 2755 2707 378 323 67 28 chr11 79785659 79785941 -70997612 - L2 LINE L2 -987 2327 2035 1904 167 3 3 chr11 79786405 79786717 -70996836 + AluJo SINE Alu 1 312 0 703 232 116 0 chr11 79786821 79787002 -70996551 - MER20 DNA MER1_type 0 219 18 322 296 20 0 chr11 79787066 79787164 -70996389 + MIR SINE MIR 41 140 -68 592 79 0 0 chr11 79787413 79787489 -70996064 + Alu SINE Alu 2 77 -232 405 282 67 0 chr11 79787529 79787678 -70995875 + MIR SINE MIR 47 205 -57 276 217 0 0 chr11 79788026 79788086 -70995467 - L2 LINE L2 0 3272 3213 2349 91 7 0 chr11 79788102 79788399 -70995154 + AluSx SINE Alu 9 307 -5 831 149 0 22 chr11 79788407 79788541 -70995012 + FLAM_C SINE Alu 1 131 -2 2257 105 0 3 chr11 79788555 79788849 -70994704 + AluSx SINE Alu 1 293 -19 255 179 51 39 chr11 79789074 79789152 -70994401 + L1ME4a LINE L1 6036 6114 -7 383 293 7 21 chr11 79789895 79790035 -70993518 - L2 LINE L2 0 3313 3176 21 0 0 0 chr11 79790178 79790199 -70993354 + AT_rich Low_complexity Low_complexity 1 21 0 2337 89 0 0 chr11 79790201 79790492 -70993061 + AluSg SINE Alu 1 291 -19 443 300 144 11 chr11 79790530 79790793 -70992760 - L2 LINE L2 -357 2957 2660 255 61 0 0 chr11 79790870 79790903 -70992650 + (TAA)n Simple_repeat Simple_repeat 3 35 0 710 268 32 5 chr11 79790915 79791105 -70992448 - MIR SINE MIR -34 228 34 2114 114 7 10 chr11 79791397 79791696 -70991857 + AluSx SINE Alu 1 298 -14 2562 49 7 3 chr11 79791994 79792301 -70991252 + AluY SINE Alu 1 308 -3 630 304 77 0 chr11 79792367 79792574 -70990979 - MIR SINE MIR -20 242 20 7131 87 28 25 chr11 79792584 79793675 -70989878 - L1MA3 LINE L1 -2 6303 5206 238 288 14 14 chr11 79793698 79793771 -70989782 + MER5C DNA MER1_type 4 76 -248 225 0 0 0 chr11 79794035 79794060 -70989493 + (TG)n Simple_repeat Simple_repeat 2 26 0 194 262 0 83 chr11 79794080 79794164 -70989389 + L2 LINE L2 3192 3268 -4 232 338 115 20 chr11 79794239 79794387 -70989166 - L2 LINE L2 -2 3270 3109 264 224 200 9 chr11 79794631 79794737 -70988816 + MIR SINE MIR 39 161 -63 2524 61 0 0 chr11 79795003 79795299 -70988254 + AluY SINE Alu 1 296 -15 26 30 0 0 chr11 79795723 79795756 -70987797 + AT_rich Low_complexity Low_complexity 1 33 0 1877 159 0 10 chr11 79795857 79796158 -70987395 - AluJb SINE Alu -10 302 5 1552 194 72 24 chr11 79796167 79796543 -70987010 + L1ME1 LINE L1 5584 5977 -189 2138 126 0 7 chr11 79796545 79796854 -70986699 + AluSx SINE Alu 5 311 -1 2017 125 3 16 chr11 79796856 79797159 -70986394 + AluSx SINE Alu 1 299 -13 2997 167 79 35 chr11 79797354 79798091 -70985462 + L1MB3 LINE L1 4485 5253 -893 1195 167 0 5 chr11 79798097 79798233 -70985320 + AluSx SINE Alu 1 135 -177 2336 64 0 14 chr11 79798233 79798530 -70985023 + AluY SINE Alu 1 293 -18 1730 215 25 3 chr11 79798534 79798901 -70984652 + L1MB3 LINE L1 5254 5628 -538 551 125 83 0 chr11 79798923 79799019 -70984534 + AluSg/x SINE Alu 208 311 -1 375 155 0 0 chr11 79799019 79799077 -70984476 + AluJo SINE Alu 88 145 -157 824 174 32 0 chr11 79799100 79799255 -70984298 + AluJo SINE Alu 122 281 -31 1759 131 50 79 chr11 79799307 79799322 -70984231 + L1MB3 LINE L1 5814 5828 -355 1791 109 3 121 chr11 79799322 79799670 -70983883 + AluSx SINE Alu 5 311 -1 1759 131 50 79 chr11 79799670 79799887 -70983666 + L1MB3 LINE L1 5828 6050 -133 2194 121 0 0 chr11 79799887 79800194 -70983359 - AluSx SINE Alu -5 307 1 1879 128 10 10 chr11 79800194 79800489 -70983064 - AluJo SINE Alu -17 295 1 1759 131 50 79 chr11 79800489 79800636 -70982917 + L1MB3 LINE L1 6345 6183 0 1120 223 130 14 chr11 79800638 79800930 -70982623 + L1ME1 LINE L1 5832 6157 -9 1831 132 10 7 chr11 79801535 79801831 -70981722 - AluSx SINE Alu -15 297 1 2053 115 3 3 chr11 79801888 79802183 -70981370 - AluSq SINE Alu -18 295 1 2140 106 3 3 chr11 79802456 79802757 -70980796 + AluSg SINE Alu 1 301 -9 1423 191 20 24 chr11 79802866 79803160 -70980393 + AluJb SINE Alu 1 293 -19 292 291 34 45 chr11 79803181 79803208 -70980345 + L1MC4a LINE L1 5799 5825 -1983 2129 93 0 0 chr11 79803208 79803511 -70980042 + AluSg SINE Alu 1 303 0 292 291 34 45 chr11 79803511 79803661 -70979892 + L1MC4a LINE L1 5825 5975 -1833 1814 172 0 0 chr11 79803728 79804031 -70979522 + AluJb SINE Alu 1 303 -9 3260 224 64 27 chr11 79804206 79805129 -70978424 - L1ME3A LINE L1 -4 6166 5204 200 33 0 33 chr11 79805133 79805163 -70978390 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2242 103 0 0 chr11 79805179 79805489 -70978064 + AluSx SINE Alu 1 310 -2 1676 179 0 4 chr11 79805488 79805768 -70977785 - AluJb SINE Alu -33 279 1 * 23 0 0 0 chr11 79805806 79805829 -70977724 + AT_rich Low_complexity Low_complexity 1 23 0 1676 174 3 7 chr11 79805865 79806163 -70977390 - AluJo SINE Alu -15 297 1 1010 267 79 12 chr11 79806176 79806581 -70976972 - L1ME3A LINE L1 -981 5165 4734 300 287 35 26 chr11 79806826 79806941 -70976612 + MIR SINE MIR 147 262 0 454 305 40 23 chr11 79806997 79807171 -70976382 - MIR3 SINE MIR 0 208 32 1966 98 0 21 chr11 79807827 79808134 -70975419 + AluSg SINE Alu 1 301 0 334 221 15 0 chr11 79808409 79808477 -70975076 - MIR SINE MIR -109 153 85 534 251 5 126 chr11 79808512 79808727 -70974826 - MIR3 SINE MIR 0 208 20 304 282 209 43 chr11 79809062 79809225 -70974328 + MIR SINE MIR 20 209 -53 219 252 77 126 chr11 79809244 79809466 -70974087 + MIR SINE MIR 26 236 -26 1505 102 0 18 chr11 79809484 79809709 -70973844 + AluSq SINE Alu 5 225 -88 1021 133 0 0 chr11 79809713 79809864 -70973689 + AluSg/x SINE Alu 154 304 -8 1075 162 11 0 chr11 79809864 79810055 -70973498 + AluSg/x SINE Alu 118 310 0 1873 144 3 0 chr11 79810077 79810362 -70973191 - AluSx SINE Alu -26 286 1 2228 86 0 0 chr11 79810543 79810833 -70972720 + AluSc SINE Alu 5 294 -15 867 173 0 40 chr11 79810833 79811006 -70972547 + AluJb SINE Alu 134 299 -13 3878 90 22 67 chr11 79811101 79811733 -70971820 - LTR14B LTR ERVK 0 608 5 19810 177 31 13 chr11 79811742 79815479 -70968074 - HERVK14C LTR ERVK -40 7377 3708 2514 59 0 0 chr11 79815479 79815786 -70967767 - AluY SINE Alu -4 307 1 19810 177 31 13 chr11 79815786 79819061 -70964492 - HERVK14C LTR ERVK -3709 3708 1 3713 117 10 58 chr11 79819061 79819684 -70963869 - LTR14B LTR ERVK 0 608 16 741 248 134 33 chr11 79819696 79820120 -70963433 + L1ME LINE L1 4795 5175 -995 2279 92 3 0 chr11 79820120 79820425 -70963128 - AluSp SINE Alu -7 306 1 741 248 134 33 chr11 79820425 79820627 -70962926 + L1ME LINE L1 5175 5355 -815 1782 164 0 17 chr11 79820627 79820926 -70962627 + AluJb SINE Alu 1 294 -18 741 248 134 33 chr11 79820926 79821011 -70962542 + L1ME LINE L1 5355 5585 -585 247 305 114 21 chr11 79821425 79821661 -70961892 - L2 LINE L2 -337 2977 2720 257 231 64 0 chr11 79821849 79821927 -70961626 + MLT1F1 LTR MaLR 51 133 -434 2193 98 7 3 chr11 79821940 79822246 -70961307 + AluSx SINE Alu 6 312 0 1156 158 11 0 chr11 79822246 79822436 -70961117 + L1MC3 LINE L1 7383 7574 -211 932 123 70 53 chr11 79822437 79822560 -70960993 + L1MC2 LINE L1 6114 6246 -98 1704 124 53 4 chr11 79822560 79822852 -70960701 + AluJb SINE Alu 9 313 0 932 123 70 53 chr11 79822852 79822953 -70960600 + L1MC2 LINE L1 6246 6344 0 215 342 38 0 chr11 79823638 79823717 -70959836 - L2 LINE L2 -534 2780 2699 2156 104 3 0 chr11 79823854 79824153 -70959400 - AluSp SINE Alu -13 300 1 205 212 23 174 chr11 79824162 79824294 -70959259 - L2 LINE L2 -1 3271 3160 224 229 62 21 chr11 79824385 79824481 -70959072 - L2 LINE L2 -665 2649 2550 334 222 86 0 chr11 79824563 79824644 -70958909 - MIR SINE MIR -32 230 143 519 241 67 57 chr11 79824902 79825100 -70958453 + MIR SINE MIR 8 203 -59 1833 145 3 7 chr11 79825149 79825445 -70958108 + AluJo SINE Alu 1 295 -17 657 61 0 0 chr11 79825452 79825534 -70958019 + AluY SINE Alu 2 83 -228 3929 34 43 0 chr11 79825534 79826001 -70957552 - LTR2B LTR ERV1 0 490 4 1513 41 66 5 chr11 79826001 79826250 -70957303 + AluY SINE Alu 77 337 0 2190 109 0 3 chr11 79826250 79826553 -70957000 + AluSx SINE Alu 1 302 -10 2210 60 3 3 chr11 79826556 79826881 -70956672 + AluY SINE Alu 1 325 0 2032 125 16 0 chr11 79826881 79827185 -70956368 + AluSq SINE Alu 1 309 -4 510 115 0 42 chr11 79827515 79827611 -70955942 - AluSg/x SINE Alu -12 297 206 9759 49 1 112 chr11 79828218 79829775 -70953778 - SVA Other Other -2 1384 1 278 353 57 0 chr11 79829811 79829933 -70953620 + L2 LINE L2 1783 1911 -1403 1860 147 0 7 chr11 79829946 79830239 -70953314 + AluJb SINE Alu 1 291 -21 2192 98 0 7 chr11 79830240 79830536 -70953017 + AluSq SINE Alu 1 294 -19 548 238 7 7 chr11 79830538 79830681 -70952872 - L1MB7 LINE L1 -7 6177 6035 2227 87 0 10 chr11 79830691 79830991 -70952562 + AluSq SINE Alu 3 299 -14 682 278 84 30 chr11 79831047 79831201 -70952352 + L2 LINE L2 1932 2076 -1238 2086 116 3 3 chr11 79831201 79831502 -70952051 - AluSx SINE Alu -11 301 1 682 278 84 30 chr11 79831502 79831682 -70951871 + L2 LINE L2 2076 2284 -1030 2226 99 3 3 chr11 79831812 79832116 -70951437 + AluSp SINE Alu 1 304 -9 1748 161 0 7 chr11 79832247 79832539 -70951014 + AluJb SINE Alu 1 290 -22 760 195 0 0 chr11 79832614 79832742 -70950811 + AluJo/FLAM SINE Alu 1 128 -174 2085 86 65 0 chr11 79832745 79833035 -70950518 + AluSg SINE Alu 2 310 0 1948 143 0 7 chr11 79833101 79833401 -70950152 + AluSx SINE Alu 1 298 -14 217 256 64 39 chr11 79833416 79833494 -70950059 + L2 LINE L2 3234 3313 0 979 243 78 51 chr11 79833653 79834023 -70949530 + MLT1L LTR MaLR 143 522 -93 1482 116 116 11 chr11 79834025 79834228 -70949325 - AluSg SINE Alu -6 304 63 1928 65 6 102 chr11 79834228 79834551 -70949002 - AluY SINE Alu -19 292 1 1482 116 116 11 chr11 79834551 79834622 -70948931 - AluSg SINE Alu -247 63 1 974 88 7 7 chr11 79834622 79834759 -70948794 - AluSg SINE Alu -173 137 1 2002 111 0 7 chr11 79834795 79835093 -70948460 - AluSx SINE Alu -16 296 1 279 104 0 0 chr11 79835192 79835240 -70948313 + (T)n Simple_repeat Simple_repeat 1 48 0 1470 132 0 29 chr11 79835497 79835739 -70947814 - AluSg/x SINE Alu 0 312 78 1843 94 11 31 chr11 79835748 79836035 -70947518 + AluY SINE Alu 1 281 -30 1944 97 24 7 chr11 79836173 79836461 -70947092 - AluSx SINE Alu -19 293 1 237 323 55 38 chr11 79836502 79836737 -70946816 - HAL1 LINE L1 -2129 378 140 287 321 124 30 chr11 79838097 79838275 -70945278 - MLT1L LTR MaLR -27 588 428 1783 59 0 5 chr11 79838275 79838496 -70945057 + AluY SINE Alu 1 220 -91 287 321 124 30 chr11 79838496 79838616 -70944937 - MLT1L LTR MaLR -187 428 262 2145 104 14 0 chr11 79838834 79839131 -70944422 + AluSx SINE Alu 1 301 -11 2172 112 3 0 chr11 79839135 79839439 -70944114 + AluSp SINE Alu 1 305 -8 405 292 139 0 chr11 79839819 79839963 -70943590 - L2 LINE L2 -1 3271 3108 2287 134 14 12 chr11 79840028 79840392 -70943161 + MLT1A1 LTR MaLR 1 365 0 1751 142 40 0 chr11 79841485 79841781 -70941772 - AluJo SINE Alu -4 308 1 2138 94 0 7 chr11 79841791 79842088 -70941465 - AluSq SINE Alu -18 295 1 2520 52 0 0 chr11 79842094 79842403 -70941150 - AluSc SINE Alu 0 309 1 299 235 29 15 chr11 79842404 79842472 -70941081 + MIR SINE MIR 81 149 -59 245 246 16 0 chr11 79842706 79842767 -70940786 + C-rich Low_complexity Low_complexity 4 65 0 228 67 0 0 chr11 79843066 79843096 -70940457 + (CACG)n Simple_repeat Simple_repeat 4 33 0 26 64 0 0 chr11 79843098 79843145 -70940408 + GC_rich Low_complexity Low_complexity 1 47 0 1073 121 74 5 chr11 79845728 79845918 -70937635 - L1MC2 LINE L1 -11 6333 6131 292 154 0 0 chr11 79845919 79845971 -70937582 - L1MC3 LINE L1 -199 7586 7535 643 250 52 5 chr11 79846201 79846393 -70937160 + L2 LINE L2 3111 3311 -2 1522 112 3 112 chr11 79846761 79847064 -70936489 + AluSx SINE Alu 1 270 -42 2090 110 13 3 chr11 79847287 79847588 -70935965 - AluSc SINE Alu -5 304 1 21 0 0 0 chr11 79848144 79848165 -70935388 + AT_rich Low_complexity Low_complexity 1 21 0 967 207 146 0 chr11 79848424 79848704 -70934849 + L1M4 LINE L1 2805 3125 -3021 2420 166 51 7 chr11 79848827 79849280 -70934273 - MER74A LTR ERVL -85 473 1 1831 212 70 133 chr11 79849285 79849486 -70934067 + L1M4 LINE L1 3128 3340 -2806 2220 125 0 0 chr11 79849486 79849783 -70933770 + AluSx SINE Alu 1 297 -15 1831 212 70 133 chr11 79849783 79850219 -70933334 + L1M4 LINE L1 3340 3802 -2344 352 36 18 18 chr11 79850219 79850274 -70933279 + (TTA)n Simple_repeat Simple_repeat 2 56 0 778 175 18 0 chr11 79850279 79850393 -70933160 - FLAM_C SINE Alu -26 117 2 1831 212 70 133 chr11 79850393 79850681 -70932872 + L1M4 LINE L1 3806 4107 -2039 262 387 0 2 chr11 79851273 79851396 -70932157 + MIR SINE MIR 33 153 -63 1528 170 33 40 chr11 79851439 79851739 -70931814 - AluJo SINE Alu -14 298 1 198 355 41 47 chr11 79851907 79852076 -70931477 + L2 LINE L2 803 970 -2344 27 29 0 0 chr11 79852076 79852110 -70931443 + AT_rich Low_complexity Low_complexity 1 34 0 1789 167 7 10 chr11 79852110 79852278 -70931275 - AluJb SINE Alu -7 305 138 2518 76 0 0 chr11 79852278 79852582 -70930971 - AluY SINE Alu -5 306 3 2356 98 0 0 chr11 79852584 79852880 -70930673 - AluSg SINE Alu -14 296 1 1789 167 7 10 chr11 79852880 79853014 -70930539 - AluJb SINE Alu -175 137 1 2387 116 39 33 chr11 79853115 79853477 -70930076 + THE1B LTR MaLR 1 364 0 384 331 58 43 chr11 79853604 79853882 -70929671 + L2 LINE L2 1299 1580 -1734 404 263 74 63 chr11 79853913 79854088 -70929465 - L2 LINE L2 -18 3295 3119 2445 63 0 3 chr11 79854099 79854400 -70929153 + AluY SINE Alu 1 300 -11 393 280 124 55 chr11 79854997 79855254 -70928299 + L2 LINE L2 3027 3301 -12 2145 105 0 11 chr11 79855256 79855583 -70927970 + AluSx SINE Alu 1 324 0 280 206 108 98 chr11 79855689 79855776 -70927777 + L2 LINE L2 3170 3261 -11 1957 130 0 7 chr11 79855776 79856083 -70927470 + AluSx SINE Alu 1 305 0 280 206 108 98 chr11 79856083 79856096 -70927457 + L2 LINE L2 3261 3272 0 1539 186 55 3 chr11 79856250 79856540 -70927013 + AluJb SINE Alu 1 305 -7 399 89 0 0 chr11 79856540 79856596 -70926957 + (TA)n Simple_repeat Simple_repeat 2 57 0 372 173 144 10 chr11 79856599 79856703 -70926850 + L1M4 LINE L1 4377 4494 -1652 1751 86 16 12 chr11 79856706 79856950 -70926603 - THE1C LTR MaLR 0 375 131 316 277 47 61 chr11 79857678 79857826 -70925727 + MIR SINE MIR 116 261 -1 2450 83 0 3 chr11 79858403 79858704 -70924849 + AluSq SINE Alu 1 300 -13 2245 101 7 0 chr11 79858969 79859266 -70924287 + AluSq SINE Alu 1 299 -14 222 214 0 0 chr11 79859924 79859980 -70923573 + T-rich Low_complexity Low_complexity 1 56 0 466 123 46 0 chr11 79861074 79861139 -70922414 - AluJ/FLAM SINE Alu -219 93 26 2025 134 3 0 chr11 79861139 79861423 -70922130 + AluSq SINE Alu 1 285 -28 269 214 0 0 chr11 79861444 79861486 -70922067 - AluJ/monomer SINE Alu -260 42 1 2205 103 3 0 chr11 79863459 79863751 -70919802 + AluSg SINE Alu 1 293 -17 2148 99 28 0 chr11 79863905 79864189 -70919364 - AluSg SINE Alu -18 292 1 2207 110 0 7 chr11 79864195 79864503 -70919050 - AluSg SINE Alu -4 306 1 216 97 0 0 chr11 79864642 79864673 -70918880 + (TA)n Simple_repeat Simple_repeat 1 31 0 2161 125 0 3 chr11 79864673 79864970 -70918583 - AluSq SINE Alu -13 300 5 23 0 0 0 chr11 79864976 79864999 -70918554 + AT_rich Low_complexity Low_complexity 1 23 0 2411 64 13 0 chr11 79865296 79865594 -70917959 - AluY SINE Alu -9 302 1 857 248 15 5 chr11 79865594 79865792 -70917761 - L2 LINE L2 -1290 2024 1825 1775 145 42 0 chr11 79865871 79866154 -70917399 + AluSx SINE Alu 1 295 -17 2237 108 7 0 chr11 79866235 79866530 -70917023 + AluSx SINE Alu 4 300 -12 225 291 55 8 chr11 79866583 79866710 -70916843 + L1P LINE L1 4879 5011 -1135 1771 248 51 54 chr11 79866869 79867551 -70916002 + L1MC5 LINE L1 5254 5933 -1875 863 219 50 0 chr11 79867970 79868130 -70915423 + FRAM SINE Alu 1 161 -15 2127 133 3 0 chr11 79868135 79868428 -70915125 - AluSx SINE Alu -18 294 1 22 35 0 0 chr11 79868582 79868611 -70914942 + AT_rich Low_complexity Low_complexity 1 29 0 2370 56 7 26 chr11 79868618 79868920 -70914633 + AluY SINE Alu 1 296 -15 291 215 0 0 chr11 79868920 79868985 -70914568 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 928 211 130 72 chr11 79868985 79869405 -70914148 + L1MC5 LINE L1 6614 6958 -1003 330 26 0 0 chr11 79869405 79869444 -70914109 + (TAA)n Simple_repeat Simple_repeat 3 41 0 928 211 130 72 chr11 79869444 79869497 -70914056 + L1MC5 LINE L1 6958 7007 -954 188 103 51 0 chr11 79869507 79869546 -70914007 + CT-rich Low_complexity Low_complexity 2 42 0 275 176 78 0 chr11 79869555 79869606 -70913947 + L1MC5 LINE L1 7075 7129 -832 1066 173 36 69 chr11 79869641 79869918 -70913635 + L1MC4 LINE L1 7693 7960 -82 227 176 59 0 chr11 79869902 79869953 -70913600 + L1MC4 LINE L1 7777 7830 -212 * 610 255 160 19 chr11 79869953 79870165 -70913388 - L2 LINE L2 -1703 1611 1370 2294 99 7 0 chr11 79870413 79870707 -70912846 + AluSq SINE Alu 1 296 -17 474 282 50 12 chr11 79870713 79870954 -70912599 + L1ME4a LINE L1 5643 5892 -229 523 136 56 96 chr11 79870968 79871093 -70912460 - FRAM SINE Alu -2 174 55 228 295 21 32 chr11 79871191 79871286 -70912267 - L1ME3A LINE L1 -26 6144 6051 2287 97 13 3 chr11 79871734 79872043 -70911510 - AluSp SINE Alu -1 312 1 2484 64 3 0 chr11 79872353 79872648 -70910905 - AluY SINE Alu -15 296 1 25 31 0 0 chr11 79872733 79872765 -70910788 + AT_rich Low_complexity Low_complexity 1 32 0 245 296 72 48 chr11 79872856 79872981 -70910572 + L2 LINE L2 2933 3060 -212 324 0 0 0 chr11 79873078 79873114 -70910439 + (TC)n Simple_repeat Simple_repeat 1 36 0 190 315 0 0 chr11 79873124 79873178 -70910375 + L2 LINE L2 3201 3254 -18 1939 150 3 0 chr11 79873316 79873616 -70909937 - AluSx SINE Alu -11 301 1 192 45 23 45 chr11 79873840 79873884 -70909669 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2324 68 0 0 chr11 79873886 79874165 -70909388 - AluY SINE Alu -30 281 3 2347 97 0 7 chr11 79874169 79874479 -70909074 - AluSc SINE Alu -1 308 1 1649 203 3 3 chr11 79874480 79874781 -70908772 - AluJb SINE Alu -11 301 1 1666 109 156 0 chr11 79874837 79875093 -70908460 - AluSg SINE Alu -4 296 1 1916 151 10 10 chr11 79875116 79875421 -70908132 - AluSx SINE Alu -7 305 1 1763 119 142 8 chr11 79875759 79876020 -70907533 + AluSx SINE Alu 1 296 -6 462 224 0 9 chr11 79876032 79876148 -70907405 - L1ME2 LINE L1 -5 6159 6045 * 1277 260 39 27 chr11 79876140 79876409 -70907144 - L1ME LINE L1 -3263 2817 2538 1776 155 10 36 chr11 79876409 79876713 -70906840 + AluJo SINE Alu 1 296 -16 1277 260 39 27 chr11 79876713 79876932 -70906621 - L1ME LINE L1 -3542 2538 2323 1501 157 49 29 chr11 79876935 79877241 -70906312 + AluJb SINE Alu 1 312 0 248 284 25 25 chr11 79877253 79877334 -70906219 - L1ME LINE L1 -5989 81 1 1681 149 71 11 chr11 79878281 79878562 -70904991 - AluJo SINE Alu -14 298 1 233 314 71 0 chr11 79878996 79879066 -70904487 + L2 LINE L2 3171 3245 -27 1238 156 58 104 chr11 79879311 79879619 -70903934 + AluJo SINE Alu 1 294 -8 2290 99 0 16 chr11 79879728 79880042 -70903511 + AluSx SINE Alu 1 309 -3 425 307 134 5 chr11 79880361 79880563 -70902990 - MIR SINE MIR -27 235 8 2230 111 13 3 chr11 79880636 79880943 -70902610 - AluSx SINE Alu -2 310 1 1062 294 75 56 chr11 79881032 79881234 -70902319 - L2 LINE L2 0 3313 3116 1857 138 10 55 chr11 79881234 79881568 -70901985 + AluSx SINE Alu 1 312 0 1062 294 75 56 chr11 79881568 79881976 -70901577 - L2 LINE L2 -197 3116 2691 1354 184 60 7 chr11 79881976 79882258 -70901295 + AluJo SINE Alu 1 297 -15 1062 294 75 56 chr11 79882258 79882287 -70901266 - L2 LINE L2 -622 2691 2664 2021 134 13 3 chr11 79882386 79882684 -70900869 + AluSq SINE Alu 1 301 -12 2407 94 0 7 chr11 79883201 79883509 -70900044 + AluSg SINE Alu 1 306 -4 299 221 29 39 chr11 79883726 79883830 -70899723 + Charlie2a DNA MER1_type 746 848 -2014 1914 151 3 13 chr11 79883837 79884149 -70899404 - AluSx SINE Alu -3 309 1 822 146 24 0 chr11 79884167 79884290 -70899263 - FLAM_C SINE Alu -17 126 1 238 244 260 8 chr11 79884481 79884604 -70898949 + MIR SINE MIR 53 206 -56 722 200 22 65 chr11 79884687 79884872 -70898681 + MER5B DNA MER1_type 1 177 -1 1583 151 81 0 chr11 79885005 79885277 -70898276 - AluJo SINE Alu -18 294 1 22 0 0 0 chr11 79885299 79885321 -70898232 + AT_rich Low_complexity Low_complexity 1 22 0 849 136 0 8 chr11 79885321 79885439 -70898114 - FLAM_C SINE Alu -16 117 1 1773 112 0 0 chr11 79885558 79885821 -70897732 - AluSx SINE Alu 0 317 55 2166 38 28 59 chr11 79885882 79886211 -70897342 - AluY SINE Alu 0 321 2 2590 52 7 3 chr11 79886348 79886658 -70896895 - AluY SINE Alu 0 311 1 2187 98 0 41 chr11 79886884 79887202 -70896351 - AluSq SINE Alu -8 305 1 183 317 98 24 chr11 79887271 79887353 -70896200 - L2 LINE L2 -48 3224 3137 593 148 252 9 chr11 79887435 79887550 -70896003 + AluJo SINE Alu 2 144 -168 180 0 0 0 chr11 79888164 79888184 -70895369 + (T)n Simple_repeat Simple_repeat 1 20 0 868 185 6 19 chr11 79888315 79888472 -70895081 + AluJo SINE Alu 120 274 -38 520 71 29 0 chr11 79888882 79888952 -70894601 - MER4D LTR ERV1 0 903 832 657 188 42 28 chr11 79888964 79889108 -70894445 - AluSg/x SINE Alu -8 301 156 2390 173 18 73 chr11 79889108 79889365 -70894188 - MER4E LTR ERV1 -131 648 378 2251 156 6 12 chr11 79889365 79889704 -70893849 + MER1B DNA MER1_type 1 337 0 2390 173 18 73 chr11 79889704 79889744 -70893809 - MER4E LTR ERV1 -401 378 337 1822 146 32 0 chr11 79889744 79890025 -70893528 - AluJo SINE Alu -14 298 9 2390 173 18 73 chr11 79890025 79890275 -70893278 - MER4E LTR ERV1 -442 337 130 1395 227 18 48 chr11 79890633 79891008 -70892545 + L1MC4 LINE L1 7183 7547 -495 2229 103 0 13 chr11 79891008 79891310 -70892243 - AluSq SINE Alu -15 298 1 1395 227 18 48 chr11 79891310 79891330 -70892223 + L1MC4 LINE L1 7547 7566 -476 574 173 0 0 chr11 79891524 79891605 -70891948 + AluJ/FLAM SINE Alu 1 81 -231 2581 164 27 16 chr11 79891672 79892161 -70891392 - L1MB3 LINE L1 -79 6104 5611 2155 116 7 3 chr11 79892433 79892734 -70890819 - AluSx SINE Alu -10 302 1 2331 96 0 19 chr11 79893099 79893411 -70890142 - AluSq SINE Alu -7 306 1 2248 77 10 7 chr11 79893423 79893721 -70889832 + AluY SINE Alu 3 301 -10 346 298 106 29 chr11 79893723 79893931 -70889622 - MIR SINE MIR -25 237 14 2548 138 27 62 chr11 79894368 79894538 -70889015 - Tigger1 DNA MER2_type 0 2418 2244 2042 143 0 3 chr11 79894538 79894838 -70888715 + AluSq SINE Alu 1 299 -14 2548 138 27 62 chr11 79894838 79895147 -70888406 - Tigger1 DNA MER2_type -174 2244 1956 1979 150 0 0 chr11 79895156 79895443 -70888110 + AluSx SINE Alu 3 289 -23 2058 145 0 7 chr11 79895451 79895755 -70887798 + AluJb SINE Alu 3 304 -8 815 168 8 0 chr11 79896200 79896331 -70887222 + FRAM SINE Alu 22 153 -23 2064 121 7 0 chr11 79896333 79896623 -70886930 - AluY SINE Alu -19 292 1 631 203 30 30 chr11 79896695 79896828 -70886725 - FLAM_A SINE Alu 0 133 1 2163 114 7 0 chr11 79897175 79897473 -70886080 - AluSg SINE Alu -10 300 1 252 346 46 88 chr11 79897630 79897870 -70885683 + L2 LINE L2 3005 3234 -38 2122 98 11 0 chr11 79898353 79898629 -70884924 - AluSg SINE Alu -31 279 1 1801 143 0 21 chr11 79898874 79899193 -70884360 - AluJb SINE Alu 0 314 2 2351 104 0 19 chr11 79899978 79900296 -70883257 + AluSp SINE Alu 1 312 -1 2204 121 3 0 chr11 79900378 79900668 -70882885 - AluSx SINE Alu -21 291 1 243 310 32 38 chr11 79900669 79900827 -70882726 - L1ME LINE L1 -334 5787 5631 606 193 188 21 chr11 79903663 79903855 -70879698 + MER58A DNA MER1_type 1 224 0 1799 191 0 3 chr11 79904352 79904650 -70878903 + AluJo SINE Alu 1 297 -15 2125 114 0 4 chr11 79904766 79905047 -70878506 + AluSc SINE Alu 20 299 -10 633 142 49 136 chr11 79905050 79905212 -70878341 + MSTB LTR MaLR 211 358 -68 406 89 0 0 chr11 79905324 79905380 -70878173 - Alu SINE Alu -256 57 2 2291 126 0 0 chr11 79905381 79905691 -70877862 - AluSx SINE Alu -2 310 1 386 104 45 0 chr11 79905691 79905758 -70877795 + MSTB LTR MaLR 355 424 -2 7589 158 62 52 chr11 79905758 79906111 -70877442 + MSTB-int LTR MaLR 1 349 -1302 2371 92 0 20 chr11 79906111 79906414 -70877139 + AluSx SINE Alu 1 297 -15 7589 158 62 52 chr11 79906414 79907501 -70876052 + MSTB-int LTR MaLR 349 1461 -190 1654 169 15 4 chr11 79907501 79907773 -70875780 - AluJo SINE Alu -25 287 13 7589 158 62 52 chr11 79907773 79907896 -70875657 + MSTB-int LTR MaLR 1461 1581 -70 447 86 0 29 chr11 79907899 79907969 -70875584 - AluJ/FRAM SINE Alu -13 299 232 1807 83 13 0 chr11 79907971 79908199 -70875354 + AluSg/x SINE Alu 66 296 -16 654 192 51 62 chr11 79908216 79908313 -70875240 + L1ME LINE L1 5592 5688 -478 1801 159 74 0 chr11 79908313 79908596 -70874957 + AluJb SINE Alu 1 304 -8 654 192 51 62 chr11 79908596 79908675 -70874878 + L1ME LINE L1 5688 5766 -400 817 107 0 0 chr11 79908675 79908778 -70874775 + AluSc SINE Alu 1 103 -206 2231 90 0 48 chr11 79909017 79909196 -70874357 - AluSx SINE Alu 0 312 153 2124 125 0 16 chr11 79909196 79909500 -70874053 - AluSx SINE Alu -13 299 1 2231 90 0 48 chr11 79909500 79909630 -70873923 - AluSx SINE Alu -159 153 18 1160 187 15 37 chr11 79909734 79909800 -70873753 - L1MB7 LINE L1 -23 6161 6095 2318 69 14 3 chr11 79909800 79910089 -70873464 - AluY SINE Alu -19 292 1 1160 187 15 37 chr11 79910089 79910311 -70873242 - L1MB7 LINE L1 -89 6095 5913 2701 203 74 6 chr11 79910311 79911066 -70872487 + MER52A LTR ERV1 12 886 -869 2140 119 10 7 chr11 79911068 79911363 -70872190 + AluSx SINE Alu 3 298 -14 2093 132 0 3 chr11 79911675 79911971 -70871582 - AluJb SINE Alu -17 295 1 382 209 11 22 chr11 79911999 79912090 -70871463 - Charlie1 DNA MER1_type 0 2761 2672 642 215 11 6 chr11 79912096 79912273 -70871280 + CT-rich Low_complexity Low_complexity 3 180 0 556 186 85 0 chr11 79912301 79912419 -70871134 - FAM SINE Alu -57 128 1 2313 101 3 0 chr11 79912449 79912746 -70870807 + AluSx SINE Alu 1 298 -14 22 56 0 0 chr11 79912774 79912810 -70870743 + AT_rich Low_complexity Low_complexity 1 36 0 2136 99 7 27 chr11 79912811 79913125 -70870428 + AluSq SINE Alu 1 308 0 976 166 12 18 chr11 79913191 79913360 -70870193 - AluSg SINE Alu -98 212 45 10112 109 17 1 chr11 79913460 79915857 -70867696 + HERVK14 LTR ERVK 882 3366 -2579 2361 93 3 13 chr11 79915857 79916170 -70867383 + AluSg SINE Alu 1 310 0 1565 191 20 24 chr11 79916268 79916562 -70866991 + AluJb SINE Alu 1 293 -19 286 291 34 45 chr11 79916583 79916610 -70866943 + L1MC4a LINE L1 5799 5825 -1983 2302 89 0 0 chr11 79916610 79916913 -70866640 + AluSg SINE Alu 1 303 0 286 291 34 45 chr11 79916913 79917063 -70866490 + L1MC4a LINE L1 5825 5975 -1833 1974 172 0 0 chr11 79917130 79917433 -70866120 + AluJb SINE Alu 1 303 -9 3090 228 63 36 chr11 79917608 79918535 -70865018 - L1ME3A LINE L1 -4 6166 5266 200 33 0 33 chr11 79918535 79918565 -70864988 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 3090 228 63 36 chr11 79918565 79918581 -70864972 - L1ME3A LINE L1 -904 5266 5252 2410 103 0 0 chr11 79918581 79918891 -70864662 + AluSx SINE Alu 1 310 -2 1841 175 0 4 chr11 79918891 79919170 -70864383 - AluJb SINE Alu -33 279 1 3090 228 63 36 chr11 79919170 79919244 -70864309 - L1ME3A LINE L1 -917 5253 5122 1815 178 3 7 chr11 79919267 79919565 -70863988 - AluJo SINE Alu -15 297 1 985 274 77 10 chr11 79919578 79919983 -70863570 - L1ME3A LINE L1 -981 5165 4734 274 287 35 26 chr11 79920228 79920343 -70863210 + MIR SINE MIR 147 262 0 414 307 30 24 chr11 79920407 79920573 -70862980 - MIR3 SINE MIR -10 198 32 2113 98 0 21 chr11 79921229 79921536 -70862017 + AluSg SINE Alu 1 301 0 316 221 15 0 chr11 79921811 79921879 -70861674 - MIR SINE MIR -109 153 85 488 258 0 53 chr11 79921914 79922065 -70861488 - MIR3 SINE MIR 0 208 66 280 282 209 43 chr11 79922464 79922627 -70860926 + MIR SINE MIR 20 209 -53 1616 102 0 18 chr11 79922886 79923111 -70860442 + AluSq SINE Alu 5 225 -88 976 133 0 0 chr11 79923115 79923266 -70860287 + AluSg/x SINE Alu 154 304 -8 1101 168 16 0 chr11 79923266 79923456 -70860097 + AluSg/x SINE Alu 118 310 0 21 0 0 0 chr11 79923460 79923481 -70860072 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr11 79923634 79923654 -70859899 + (A)n Simple_repeat Simple_repeat 1 20 0 215 257 29 48 chr11 79923679 79923784 -70859769 - L2 LINE L2 -989 2325 2223 258 279 72 12 chr11 79923906 79924180 -70859373 + LTR33 LTR ERVL 1 318 -203 653 294 153 27 chr11 79924613 79925025 -70858528 - LTR16B LTR ERVL 0 464 1 2135 136 0 16 chr11 79926556 79926898 -70856655 - AluSx SINE Alu 0 337 1 2214 114 0 13 chr11 79926996 79927312 -70856241 - AluSx SINE Alu 0 312 1 1128 64 0 36 chr11 79927312 79927452 -70856101 - AluSq/x SINE Alu -178 135 1 302 169 23 208 chr11 79927609 79927739 -70855814 - L1MC4a LINE L1 -1922 5886 5781 1868 172 23 0 chr11 79927835 79928138 -70855415 + AluJo SINE Alu 1 310 -2 25 23 0 23 chr11 79928622 79928644 -70854909 + AT_rich Low_complexity Low_complexity 1 23 -19 2008 112 0 11 chr11 79928644 79928922 -70854631 - AluSx SINE Alu -37 275 1 25 23 0 23 chr11 79928922 79928942 -70854611 + AT_rich Low_complexity Low_complexity 23 42 0 407 270 6 0 chr11 79929152 79929326 -70854227 + (TGGA)n Simple_repeat Simple_repeat 1 175 0 315 295 73 18 chr11 79929673 79929857 -70853696 + MIR SINE MIR 11 206 -56 2120 118 0 58 chr11 79929873 79930203 -70853350 + AluSp SINE Alu 1 311 -2 414 307 5 14 chr11 79930715 79930907 -70852646 + MIR SINE MIR 2 259 -3 432 0 0 0 chr11 79931594 79931642 -70851911 + (TG)n Simple_repeat Simple_repeat 1 48 0 275 333 21 0 chr11 79932001 79932094 -70851459 - L3 LINE CR1 -2 1575 1481 280 305 23 31 chr11 79933303 79933431 -70850122 - MIR SINE MIR -62 146 20 1945 121 10 40 chr11 79933483 79933672 -70849881 - AluSx SINE Alu 0 324 147 2555 81 0 0 chr11 79933672 79933979 -70849574 - AluSx SINE Alu -5 307 1 1945 121 10 40 chr11 79933979 79934122 -70849431 - AluSx SINE Alu -177 147 1 39 38 0 0 chr11 79934122 79934175 -70849378 + AT_rich Low_complexity Low_complexity 1 53 0 2012 171 0 0 chr11 79934289 79934599 -70848954 + AluJo SINE Alu 1 310 -2 335 312 18 0 chr11 79935032 79935141 -70848412 - MIR3 SINE MIR -25 183 73 452 319 112 0 chr11 79936213 79936382 -70847171 + MER91A DNA MER1_type 1 188 -8 1995 113 55 0 chr11 79937449 79937724 -70845829 + AluSq SINE Alu 1 290 -23 2440 93 0 0 chr11 79937731 79938032 -70845521 + AluSx SINE Alu 1 301 -11 280 250 191 0 chr11 79938178 79938328 -70845225 + MIR SINE MIR 33 214 -48 2319 102 3 0 chr11 79938689 79938984 -70844569 + AluSg SINE Alu 1 296 -14 475 213 33 33 chr11 79939054 79939176 -70844377 + MIR SINE MIR 8 129 -133 235 277 85 54 chr11 79940209 79940339 -70843214 + MIR3 SINE MIR 42 175 -33 2181 120 17 7 chr11 79940570 79940869 -70842684 + AluSx SINE Alu 1 302 -10 205 140 0 40 chr11 79941715 79941765 -70841788 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 1896 131 14 20 chr11 79942599 79942896 -70840657 + AluJb SINE Alu 1 295 -17 1843 118 65 0 chr11 79942903 79943199 -70840354 + AluSx SINE Alu 5 317 0 232 235 129 12 chr11 79944092 79944177 -70839376 - MIR SINE MIR -71 191 97 342 233 58 25 chr11 79944182 79944302 -70839251 + MIR SINE MIR 30 153 -55 219 266 37 73 chr11 79944389 79944498 -70839055 + MIR SINE MIR 81 185 -77 2314 120 3 0 chr11 79946081 79946390 -70837163 + AluSx SINE Alu 1 310 -2 1651 125 62 44 chr11 79946390 79946662 -70836891 + AluJo SINE Alu 30 306 -6 220 227 160 0 chr11 79947408 79947483 -70836070 - MIR SINE MIR -62 200 114 347 294 28 9 chr11 79947979 79948088 -70835465 + MIR SINE MIR 36 146 -62 227 284 14 0 chr11 79949039 79949113 -70834440 + GA-rich Low_complexity Low_complexity 1 75 0 1978 124 40 0 chr11 79949121 79949420 -70834133 + AluSx SINE Alu 1 311 -1 30 45 0 0 chr11 79949695 79949739 -70833814 + GC_rich Low_complexity Low_complexity 1 44 0 271 241 35 23 chr11 79950584 79950671 -70832882 - MIR SINE MIR -97 165 78 442 97 19 39 chr11 79950869 79950972 -70832581 + (GAAA)n Simple_repeat Simple_repeat 4 104 0 220 241 147 134 chr11 79951149 79951316 -70832237 + L3 LINE CR1 190 364 -1213 1402 184 16 13 chr11 79951316 79951626 -70831927 - AluJo SINE Alu -1 311 1 220 241 147 134 chr11 79951626 79951765 -70831788 + L3 LINE CR1 364 500 -1077 2284 89 0 0 chr11 79951793 79952095 -70831458 + AluSx SINE Alu 1 302 -10 1911 124 14 3 chr11 79952571 79952861 -70830692 + AluJb SINE Alu 5 297 -15 2028 87 4 0 chr11 79952863 79953129 -70830424 + AluSc SINE Alu 22 288 -21 2252 101 0 0 chr11 79953344 79953651 -70829902 - AluSc SINE Alu -2 307 1 1851 145 13 3 chr11 79954281 79954585 -70828968 - AluSx SINE Alu -1 311 5 2369 96 0 0 chr11 79954597 79954910 -70828643 - AluSq SINE Alu 0 313 1 970 157 25 0 chr11 79955132 79955291 -70828262 - FRAM SINE Alu -1 165 3 1360 197 46 30 chr11 79955649 79955954 -70827599 - AluJo SINE Alu -2 310 1 387 246 70 42 chr11 79956176 79956318 -70827235 - L1MC4 LINE L1 -754 7288 7143 2285 98 0 0 chr11 79956338 79956644 -70826909 - AluSx SINE Alu -6 306 1 293 226 0 0 chr11 79956816 79956878 -70826675 + L1MA10 LINE L1 6266 6327 -7 1724 151 43 0 chr11 79956895 79957194 -70826359 + AluSx SINE Alu 1 312 0 796 161 0 16 chr11 79959089 79959213 -70824340 + FLAM_A SINE Alu 1 122 -11 2215 141 58 38 chr11 79959292 79959388 -70824165 + L1MB8 LINE L1 5722 5815 -363 2528 61 0 3 chr11 79959388 79959700 -70823853 + AluY SINE Alu 1 311 0 2215 141 58 38 chr11 79959700 79960051 -70823502 + L1MB8 LINE L1 5815 6178 0 1427 177 0 70 chr11 79960065 79960381 -70823172 + AluJb SINE Alu 1 294 -18 330 197 28 14 chr11 79960431 79960502 -70823051 - AluSc SINE Alu 0 299 228 4613 64 23 24 chr11 79960602 79961302 -70822251 - SVA Other Other -687 699 1 312 27 0 0 chr11 79961302 79961339 -70822214 + (GGGAGA)n Simple_repeat Simple_repeat 2 38 0 21 36 0 0 chr11 79961424 79961452 -70822101 + AT_rich Low_complexity Low_complexity 1 28 0 859 133 0 16 chr11 79961459 79961587 -70821966 - FLAM_C SINE Alu -17 126 1 1565 151 37 7 chr11 79961610 79961881 -70821672 + AluJb SINE Alu 1 279 -33 246 62 0 0 chr11 79961881 79961913 -70821640 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2144 113 7 0 chr11 79962471 79962781 -70820772 - AluSx SINE Alu 0 312 1 261 139 0 0 chr11 79963718 79963754 -70819799 + AluSp SINE Alu 136 171 -132 2692 7 0 0 chr11 79963770 79964070 -70819483 + AluYa5 SINE Alu 1 300 -11 1538 128 121 11 chr11 79964657 79964922 -70818631 - AluSg1 SINE Alu -15 294 1 1709 148 38 3 chr11 79964922 79965213 -70818340 - AluSx SINE Alu -11 301 1 1959 102 16 13 chr11 79965740 79966045 -70817508 - AluSg SINE Alu -4 306 1 2166 99 7 0 chr11 79966484 79966778 -70816775 + AluSq SINE Alu 3 298 -15 2177 105 0 0 chr11 79966849 79967144 -70816409 + AluSx SINE Alu 1 295 -17 928 220 12 0 chr11 79968019 79968192 -70815361 + FAM SINE Alu 1 175 0 2083 122 0 0 chr11 79968274 79968569 -70814984 - AluSg SINE Alu -15 295 1 183 42 0 0 chr11 79969301 79969325 -70814228 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1765 126 11 0 chr11 79969328 79969598 -70813955 - AluSq SINE Alu -40 273 1 193 164 33 172 chr11 79969906 79970028 -70813525 + MIR SINE MIR 70 174 -88 232 255 65 111 chr11 79970348 79970501 -70813052 - L1MDa LINE L1 -5545 995 486 965 305 60 10 chr11 79970786 79970915 -70812638 - L1MDa LINE L1 -6120 420 299 180 0 0 0 chr11 79970915 79970935 -70812618 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 965 305 60 10 chr11 79970935 79971189 -70812364 - L1MDa LINE L1 -6241 299 18 1032 155 0 0 chr11 79971253 79971476 -70812077 + (TA)n Simple_repeat Simple_repeat 1 223 0 1565 170 22 0 chr11 79971477 79971747 -70811806 - AluJo SINE Alu -36 276 1 1933 107 18 0 chr11 79971829 79972135 -70811418 - AluSx SINE Alu 0 311 1 205 314 145 24 chr11 79972240 79972364 -70811189 + L2 LINE L2 3133 3271 -1 1176 69 223 0 chr11 79972893 79973081 -70810472 + MER30 DNA MER1_type 1 230 0 742 197 0 0 chr11 79973138 79973270 -70810283 - FLAM_A SINE Alu -1 132 1 1800 165 15 36 chr11 79973694 79973757 -70809796 - L1MC1 LINE L1 -5 6328 6265 2151 113 0 3 chr11 79973757 79974059 -70809494 + AluSg SINE Alu 1 301 -9 1800 165 15 36 chr11 79974059 79974328 -70809225 - L1MC1 LINE L1 -68 6265 6003 1108 183 0 10 chr11 79974328 79974530 -70809023 - AluJo SINE Alu -112 200 1 1734 285 107 62 chr11 79974540 79974670 -70808883 + L2 LINE L2 1780 1903 -1410 1945 119 0 32 chr11 79974670 79974981 -70808572 - AluSx SINE Alu -11 301 1 1734 285 107 62 chr11 79974981 79975928 -70807625 + L2 LINE L2 1903 2935 -378 1906 128 7 10 chr11 79975928 79976224 -70807329 - AluSx SINE Alu -17 295 1 1734 285 107 62 chr11 79976224 79976344 -70807209 + L2 LINE L2 2935 3048 -265 872 150 0 0 chr11 79976360 79976487 -70807066 + FLAM_C SINE Alu 1 127 -16 388 264 124 57 chr11 79976542 79976735 -70806818 + L2 LINE L2 3079 3284 -29 201 74 0 0 chr11 79976740 79976767 -70806786 + (A)n Simple_repeat Simple_repeat 1 27 0 314 179 0 0 chr11 79976767 79976823 -70806730 + L2 LINE L2 3258 3313 0 234 282 97 10 chr11 79976833 79976936 -70806617 + L2 LINE L2 3187 3298 -15 931 184 25 0 chr11 79976953 79977116 -70806437 + FAM SINE Alu 1 167 -8 359 231 22 0 chr11 79977242 79977333 -70806220 - L1ME1 LINE L1 -29 6137 6045 2051 106 10 29 chr11 79977743 79978054 -70805499 - AluSx SINE Alu -7 305 1 377 192 158 42 chr11 79978104 79978224 -70805329 + MIR SINE MIR 57 190 -72 371 267 19 0 chr11 79978231 79978336 -70805217 + MIR3 SINE MIR 81 187 -21 1521 159 21 31 chr11 79978375 79978664 -70804889 + AluJb SINE Alu 3 288 -24 21 36 0 0 chr11 79979098 79979126 -70804427 + AT_rich Low_complexity Low_complexity 1 28 0 2243 102 0 0 chr11 79980064 79980368 -70803185 - AluSg SINE Alu -6 304 1 194 305 12 49 chr11 79980543 79980625 -70802928 - L2 LINE L2 -1 3312 3234 2156 113 0 0 chr11 79980639 79980941 -70802612 + AluSx SINE Alu 1 302 -10 1649 171 10 3 chr11 79982839 79983131 -70800422 + AluJo SINE Alu 1 294 -18 431 171 0 0 chr11 79983141 79983211 -70800342 - AluJ/FLAM SINE Alu -241 71 2 1141 227 82 6 chr11 79983217 79983548 -70800005 - L1ME3A LINE L1 -4 6166 5811 * 1834 137 51 34 chr11 79983545 79983895 -70799658 + L1M3 LINE L1 5314 5669 -514 800 96 7 59 chr11 79983895 79984030 -70799523 - AluSg/x SINE Alu -15 295 168 483 278 86 125 chr11 79984039 79984446 -70799107 + L2 LINE L2 2867 3257 -15 203 304 71 0 chr11 79984881 79984937 -70798616 - L3b LINE CR1 -7 1576 1517 1912 124 37 7 chr11 79984952 79985251 -70798302 + AluSx SINE Alu 1 308 -4 1031 176 0 0 chr11 79985564 79985740 -70797813 - AluSg/x SINE Alu -3 309 134 210 71 0 0 chr11 79985751 79985779 -70797774 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 1710 98 83 47 chr11 79985779 79986055 -70797498 - AluSq SINE Alu -22 291 6 779 199 77 0 chr11 79986296 79986452 -70797101 - FAM SINE Alu -7 42 1 278 323 118 16 chr11 79986478 79986605 -70796948 - MIR SINE MIR -75 187 48 242 361 12 12 chr11 79986715 79986798 -70796755 - MIR3 SINE MIR -44 164 82 22 0 0 0 chr11 79987813 79987835 -70795718 + AT_rich Low_complexity Low_complexity 1 22 0 359 267 93 19 chr11 79988382 79988574 -70794979 - MIR SINE MIR -45 217 9 263 323 36 32 chr11 79988751 79988999 -70794554 + L2 LINE L2 2807 3055 -217 1008 276 25 4 chr11 79989011 79989250 -70794303 + MIR SINE MIR 6 249 -13 522 311 109 0 chr11 79989590 79989773 -70793780 + MIR SINE MIR 34 236 -26 272 261 179 0 chr11 79990019 79990153 -70793400 - L2 LINE L2 -235 3037 2880 385 254 49 33 chr11 79990855 79990977 -70792576 - MIR3 SINE MIR -76 132 9 197 349 35 0 chr11 79991595 79991681 -70791872 - MIR3 SINE MIR -13 195 107 213 191 243 9 chr11 79993207 79993294 -70790259 - MIR SINE MIR -74 188 76 220 248 18 101 chr11 79993331 79993440 -70790113 - L2 LINE L2 -493 2821 2722 1382 148 4 13 chr11 79994074 79994311 -70789242 - AluJb SINE Alu -19 293 59 509 330 85 24 chr11 79994639 79994869 -70788684 - MIR SINE MIR -7 255 16 470 291 34 17 chr11 79994869 79995048 -70788505 - MER5A DNA MER1_type 0 189 8 188 65 0 32 chr11 79995567 79995598 -70787955 + (GGGAGA)n Simple_repeat Simple_repeat 6 35 0 274 181 219 19 chr11 79996030 79996135 -70787418 - MIR SINE MIR 0 262 137 827 134 0 8 chr11 79996162 79996289 -70787264 - FLAM_C SINE Alu -17 126 1 2051 129 10 49 chr11 79996298 79996685 -70786868 - L1MB8 LINE L1 0 6178 5807 182 268 0 0 chr11 79996702 79996743 -70786810 - MIR SINE MIR -60 148 108 297 266 21 21 chr11 79996978 79997072 -70786481 + G-rich Low_complexity Low_complexity 1 94 0 396 302 43 14 chr11 79998229 79998368 -70785185 - MIR SINE MIR -8 254 112 2035 102 10 30 chr11 79998807 79999111 -70784442 - AluSx SINE Alu -10 302 5 557 279 76 0 chr11 80000277 80000455 -70783098 - MIR SINE MIR -50 212 21 181 153 69 83 chr11 80001089 80001161 -70782392 - MIR3 SINE MIR -28 180 110 229 299 52 0 chr11 80001408 80001485 -70782068 + MIR3 SINE MIR 114 194 -14 1786 155 0 34 chr11 80002419 80002716 -70780837 + AluJo SINE Alu 5 291 -21 184 321 111 48 chr11 80002782 80003034 -70780519 - L2 LINE L2 -76 3196 2929 298 270 78 17 chr11 80004214 80004329 -70779224 + MIR3 SINE MIR 42 163 -45 1034 121 0 0 chr11 80006313 80006453 -70777100 - AluSg/x SINE Alu -19 291 152 837 197 198 180 chr11 80007451 80007757 -70775796 - L2 LINE L2 -555 2759 2460 849 86 60 0 chr11 80007757 80007906 -70775647 + FRAM SINE Alu 26 181 0 837 197 198 180 chr11 80007906 80008386 -70775167 - L2 LINE L2 -854 2460 1840 527 298 85 36 chr11 80008390 80008471 -70775082 - L2 LINE L2 -619 2695 2619 2251 114 7 0 chr11 80008471 80008769 -70774784 + AluSx SINE Alu 1 300 -12 527 298 85 36 chr11 80008769 80009217 -70774336 - L2 LINE L2 -695 2619 2140 210 284 114 0 chr11 80009595 80009683 -70773870 - MIR SINE MIR -84 178 81 745 257 93 46 chr11 80010063 80010502 -70773051 + L2 LINE L2 1353 1812 -1502 960 266 65 19 chr11 80010716 80011149 -70772404 + L1MDa LINE L1 1672 2145 -4408 271 250 42 0 chr11 80011491 80011563 -70771990 + MER81 DNA DNA 38 112 -2 1052 45 23 23 chr11 80011941 80012073 -70771480 + AluSc SINE Alu 1 132 -177 348 287 73 7 chr11 80012388 80012538 -70771015 - MIR SINE MIR -76 186 27 1384 135 19 0 chr11 80012738 80012945 -70770608 + AluJo SINE Alu 87 297 -15 325 288 36 10 chr11 80013263 80013311 -70770242 + MIR SINE MIR 9 54 -171 2304 81 24 10 chr11 80013311 80013607 -70769946 + AluSc SINE Alu 1 300 -9 325 288 36 10 chr11 80013607 80013699 -70769854 + MIR SINE MIR 54 155 -70 1851 149 0 4 chr11 80013755 80014031 -70769522 - AluSx SINE Alu -37 275 1 426 211 92 0 chr11 80014032 80014141 -70769412 + MIR SINE MIR 122 240 -22 403 294 112 12 chr11 80014184 80014354 -70769199 + L2 LINE L2 3115 3301 -12 254 315 88 46 chr11 80015149 80015454 -70768099 + L2 LINE L2 2934 3251 -21 186 293 78 60 chr11 80015690 80015806 -70767747 + L2 LINE L2 3150 3267 -5 481 276 31 0 chr11 80015940 80016067 -70767486 + L2 LINE L2 3182 3312 -1 1952 174 0 3 chr11 80016372 80016676 -70766877 - AluJb SINE Alu -9 303 1 479 197 158 25 chr11 80016770 80016926 -70766627 + MIR SINE MIR 54 224 -38 508 197 57 25 chr11 80017757 80017879 -70765674 - MIR SINE MIR -19 243 118 278 312 120 59 chr11 80017948 80018323 -70765230 + L2 LINE L2 2836 3233 -39 255 276 171 0 chr11 80018677 80018782 -70764771 - L2 LINE L2 -8 3264 3142 197 333 53 35 chr11 80018791 80018905 -70764648 - MIR SINE MIR -61 147 32 1386 215 35 10 chr11 80019209 80019497 -70764056 + AluJo SINE Alu 1 295 -17 252 231 128 34 chr11 80019497 80019614 -70763939 + MIR SINE MIR 94 221 -41 413 298 132 15 chr11 80021392 80021597 -70761956 + MIR SINE MIR 20 248 -14 333 350 99 9 chr11 80021977 80022200 -70761353 + L2 LINE L2 2996 3238 -34 2038 152 3 0 chr11 80022477 80022780 -70760773 - AluSx SINE Alu -8 304 1 313 243 36 63 chr11 80022918 80023029 -70760524 + L2 LINE L2 3192 3299 -14 268 329 51 22 chr11 80023270 80023407 -70760146 + MER5A DNA MER1_type 39 179 -10 804 198 56 0 chr11 80023428 80023590 -70759963 - MER5B DNA MER1_type -7 171 1 249 289 0 26 chr11 80023602 80023678 -70759875 + MER5A DNA MER1_type 7 80 -109 206 267 0 33 chr11 80023635 80023695 -70759858 - MER5A DNA MER1_type -27 162 105 * 250 341 91 8 chr11 80023765 80023897 -70759656 - MIR3 SINE MIR -46 162 20 260 277 128 40 chr11 80025031 80025179 -70758374 - MIR SINE MIR -56 206 46 999 204 11 0 chr11 80026042 80026228 -70757325 + MER5A DNA MER1_type 2 189 0 1224 151 39 0 chr11 80026236 80026442 -70757111 + MER20 DNA MER1_type 1 214 -5 2104 104 51 42 chr11 80026643 80026979 -70756574 + MER1B DNA MER1_type 1 339 0 2038 113 55 3 chr11 80027111 80027404 -70756149 + AluSg SINE Alu 1 308 -2 231 265 147 29 chr11 80027411 80027513 -70756040 + FLAM_C SINE Alu 2 115 -18 363 44 0 0 chr11 80027515 80027560 -70755993 + (CA)n Simple_repeat Simple_repeat 1 45 0 23 0 0 0 chr11 80027580 80027603 -70755950 + AT_rich Low_complexity Low_complexity 1 23 0 234 335 91 74 chr11 80027995 80028171 -70755382 + L2 LINE L2 3003 3181 -91 191 338 0 15 chr11 80028155 80028223 -70755330 - MIR3 SINE MIR -136 72 6 * 359 287 105 28 chr11 80028947 80029090 -70754463 + L2 LINE L2 2560 2713 -601 2076 139 0 0 chr11 80029091 80029385 -70754168 + AluSx SINE Alu 1 294 -18 249 250 11 34 chr11 80029433 80029521 -70754032 - MIR SINE MIR 0 262 177 4593 161 58 33 chr11 80029600 80030470 -70753083 - L1MB8 LINE L1 -1 6177 5330 1490 168 41 62 chr11 80030470 80030762 -70752791 - AluJb SINE Alu -26 286 1 4593 161 58 33 chr11 80030762 80030796 -70752757 - L1MB8 LINE L1 -848 5330 5298 2215 77 21 0 chr11 80030796 80031083 -70752470 + AluSc SINE Alu 1 293 -16 4593 161 58 33 chr11 80031083 80031184 -70752369 - L1MB8 LINE L1 -880 5298 5201 1923 129 72 32 chr11 80031184 80031532 -70752021 - L1PA16 LINE L1 0 6166 5805 4593 161 58 33 chr11 80031532 80032178 -70751375 - L1MB8 LINE L1 -977 5201 4367 2139 141 0 10 chr11 80032178 80032490 -70751063 - AluJb SINE Alu -3 309 1 4593 161 58 33 chr11 80032490 80032543 -70751010 - L1MB8 LINE L1 -1811 4367 4317 683 170 59 0 chr11 80032550 80032685 -70750868 + Charlie1 DNA MER1_type 2619 2761 0 1601 198 21 74 chr11 80032686 80032964 -70750589 - L1ME1 LINE L1 -5 6161 5918 1639 170 53 7 chr11 80032964 80033246 -70750307 - AluJo SINE Alu -17 295 1 1601 198 21 74 chr11 80033246 80033451 -70750102 - L1ME1 LINE L1 -248 5918 5704 574 263 63 16 chr11 80033574 80033764 -70749789 - MIR SINE MIR -50 212 14 333 240 135 0 chr11 80035055 80035159 -70748394 - MIR SINE MIR -13 249 132 299 315 28 0 chr11 80035372 80035480 -70748073 - L2 LINE L2 0 3313 3203 312 267 0 0 chr11 80035509 80035584 -70747969 + L2 LINE L2 1758 1832 -1482 280 160 27 53 chr11 80035600 80035675 -70747878 + Charlie1 DNA MER1_type 2183 2255 -506 727 161 15 0 chr11 80035691 80035821 -70747732 - L1MB7 LINE L1 -19 6165 6034 1627 206 4 0 chr11 80036416 80036697 -70746856 - AluJo SINE Alu -30 282 1 257 200 122 11 chr11 80036805 80036895 -70746658 + L1ME4a LINE L1 6021 6120 -1 1736 167 3 30 chr11 80037632 80037932 -70745621 + AluJo SINE Alu 11 302 -10 643 266 90 29 chr11 80038275 80038519 -70745034 + L2 LINE L2 3005 3263 -9 850 87 94 0 chr11 80038589 80038716 -70744837 + MER85 DNA T2_type 1 139 0 238 266 101 25 chr11 80038816 80038895 -70744658 + L2 LINE L2 3158 3242 -30 566 245 120 51 chr11 80038914 80039130 -70744423 - MIR SINE MIR -12 250 20 385 302 0 1 chr11 80039725 80039840 -70743713 + MIR SINE MIR 38 150 -63 754 204 43 27 chr11 80039947 80040133 -70743420 - MIR SINE MIR -70 192 4 1003 163 178 93 chr11 80040453 80040608 -70742945 + AluJo SINE Alu 1 141 -171 2533 66 0 0 chr11 80040608 80040910 -70742643 + AluY SINE Alu 1 302 -9 1003 163 178 93 chr11 80040910 80041024 -70742529 + AluJo SINE Alu 141 293 -19 225 0 0 0 chr11 80041124 80041149 -70742404 + (A)n Simple_repeat Simple_repeat 1 25 0 250 275 66 11 chr11 80041395 80041486 -70742067 - MIR SINE MIR -73 189 94 656 267 62 19 chr11 80041676 80041886 -70741667 - MIR SINE MIR -10 252 34 362 279 57 28 chr11 80042199 80042386 -70741167 + MIR SINE MIR 33 223 -39 282 283 0 40 chr11 80042436 80042535 -70741018 + MIR3 SINE MIR 109 203 -5 454 309 132 5 chr11 80043066 80043286 -70740267 - MIR SINE MIR -8 254 7 281 358 24 30 chr11 80043315 80043480 -70740073 + L2 LINE L2 2932 3095 -177 615 131 0 181 chr11 80043509 80043669 -70739884 - FLAM_A SINE Alu -2 131 1 1514 173 45 0 chr11 80044295 80044561 -70738992 + AluJb SINE Alu 1 278 -34 225 0 0 0 chr11 80044561 80044586 -70738967 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 353 269 113 25 chr11 80044744 80044904 -70738649 + MIR SINE MIR 20 193 -69 522 188 25 219 chr11 80044907 80045231 -70738322 - MIR SINE MIR 0 262 2 1157 169 14 5 chr11 80045391 80045598 -70737955 - MER3 DNA MER1_type 0 209 1 1963 48 0 4 chr11 80045824 80046051 -70737502 + AluY SINE Alu 86 311 0 32372 74 11 4 chr11 80046279 80050509 -70733044 + L1PA5 LINE L1 5 4263 -1883 2623 35 10 0 chr11 80050520 80050833 -70732720 - L1PA4 LINE L1 -3 6152 5837 * 8826 48 1 1 chr11 80050829 80052692 -70730861 + L1PA5 LINE L1 4273 6152 -2 431 160 75 11 chr11 80052918 80053012 -70730541 - MER67C LTR ERV1 -62 648 549 266 329 25 0 chr11 80054062 80054141 -70729412 + LTR67 LTR ERVL 114 194 -363 329 241 29 80 chr11 80054819 80054956 -70728597 + MIR SINE MIR 16 145 -63 2118 92 29 14 chr11 80055048 80055352 -70728201 - AluSx SINE Alu 0 308 1 311 256 132 10 chr11 80055820 80055943 -70727610 - MIR SINE MIR -62 146 36 219 326 35 78 chr11 80056168 80056309 -70727244 - L2 LINE L2 -123 3149 3015 257 254 0 0 chr11 80056343 80056402 -70727151 + MIR SINE MIR 96 154 -108 364 339 60 46 chr11 80056998 80057281 -70726272 + L2 LINE L2 2823 3109 -163 212 198 123 86 chr11 80057336 80057417 -70726136 + L2 LINE L2 3127 3210 -62 292 285 60 5 chr11 80057741 80057822 -70725731 + MIR SINE MIR 61 144 -64 632 185 191 0 chr11 80057881 80058043 -70725510 - MER46A DNA MER2_type 0 236 44 21 0 0 0 chr11 80058106 80058127 -70725426 + AT_rich Low_complexity Low_complexity 1 21 0 242 186 51 0 chr11 80058820 80058879 -70724674 - MIR SINE MIR -119 143 82 463 233 31 54 chr11 80058928 80059057 -70724496 + L2 LINE L2 3188 3313 0 270 327 75 75 chr11 80059067 80059293 -70724260 - L2 LINE L2 -76 3196 2971 1626 182 74 56 chr11 80059350 80059559 -70723994 - Charlie4a DNA MER1_type -1468 493 289 2304 111 0 9 chr11 80059559 80059874 -70723679 + AluSx SINE Alu 1 312 0 1626 182 74 56 chr11 80059874 80060110 -70723443 - Charlie4a DNA MER1_type -1672 289 40 1911 164 11 0 chr11 80061059 80061372 -70722181 + AluJb SINE Alu 1 316 0 246 333 108 9 chr11 80061377 80061488 -70722065 + L3 LINE CR1 1424 1545 -32 212 272 97 7 chr11 80061710 80061796 -70721757 - MIR SINE MIR -86 122 38 190 319 53 0 chr11 80062611 80062705 -70720848 + MIR SINE MIR 116 214 -48 441 371 87 52 chr11 80062868 80063294 -70720259 + L2 LINE L2 2818 3258 -14 2420 60 22 3 chr11 80063716 80064030 -70719523 + L1PA7 LINE L1 5820 6139 -15 604 262 54 18 chr11 80064113 80064281 -70719272 + MIR SINE MIR 71 244 -18 297 343 34 43 chr11 80065094 80065301 -70718252 + MIR SINE MIR 20 224 -38 1044 204 56 88 chr11 80065438 80065723 -70717830 - AluJo SINE Alu -34 278 3 558 304 54 54 chr11 80065723 80065963 -70717590 - MIR SINE MIR -1 261 22 566 191 0 0 chr11 80065973 80066083 -70717470 - MER46C DNA MER2_type -1 337 228 633 227 32 19 chr11 80066092 80066246 -70717307 - MER58A DNA MER1_type -26 198 43 314 230 180 0 chr11 80066253 80066353 -70717200 - MER46C DNA MER2_type -216 122 5 285 248 31 85 chr11 80066454 80066583 -70716970 + MIR3 SINE MIR 81 202 -6 555 287 48 5 chr11 80066964 80067152 -70716401 - MIR SINE MIR -17 245 50 411 269 114 40 chr11 80067314 80067515 -70716038 - MIR SINE MIR -6 256 41 431 293 67 34 chr11 80067571 80067747 -70715806 + MIR SINE MIR 14 192 -64 387 60 0 0 chr11 80067803 80067853 -70715700 + (CAT)n Simple_repeat Simple_repeat 3 52 0 4691 47 6 25 chr11 80067947 80068322 -70715231 - L1P LINE L1 -1760 4386 4026 2284 76 24 0 chr11 80068322 80068613 -70714940 - AluY SINE Alu -13 298 1 4691 47 6 25 chr11 80068613 80068879 -70714674 - L1P LINE L1 -2120 4026 3757 7746 53 11 0 chr11 80068896 80070644 -70712909 + L1PA6 LINE L1 4397 6154 0 954 86 0 0 chr11 80070657 80070774 -70712779 - AluSq/x SINE Alu -195 117 1 630 143 90 0 chr11 80070776 80070909 -70712644 + LTR54 LTR ERV1 341 485 -25 924 184 19 0 chr11 80071341 80071499 -70712054 - FRAM SINE Alu -5 161 1 543 218 28 91 chr11 80071503 80071748 -70711805 - L1MD3 LINE L1 0 8036 7823 2399 207 83 2 chr11 80072334 80072866 -70710687 - MER90 LTR ERV1 0 575 1 531 260 7 41 chr11 80073102 80073248 -70710305 + MIR SINE MIR 21 161 -101 2302 84 3 3 chr11 80073480 80073776 -70709777 + AluSq SINE Alu 1 296 -17 279 341 49 24 chr11 80073930 80074053 -70709500 - L2 LINE L2 0 3272 3147 418 286 85 60 chr11 80074420 80074619 -70708934 - MIR SINE MIR -55 207 4 260 342 42 17 chr11 80074934 80075054 -70708499 + L2 LINE L2 2896 3018 -254 291 256 41 41 chr11 80075172 80075344 -70708209 + Charlie7 DNA MER1_type 2441 2612 0 621 127 36 18 chr11 80075402 80075567 -70707986 + L1PA16 LINE L1 6046 6212 0 900 263 34 81 chr11 80075861 80076437 -70707116 - L2 LINE L2 -21 3292 2757 800 114 0 0 chr11 80076445 80076550 -70707003 + AluSq/x SINE Alu 1 105 -207 308 71 0 0 chr11 80076554 80076596 -70706957 + Alu SINE Alu 232 273 -27 505 250 38 49 chr11 80076636 80076820 -70706733 - L2 LINE L2 -2406 908 727 204 298 106 19 chr11 80077327 80077431 -70706122 - MIR SINE MIR -64 144 32 221 191 16 0 chr11 80078219 80078259 -70705294 + (TA)n Simple_repeat Simple_repeat 1 44 -20 2292 88 3 7 chr11 80078259 80078553 -70705000 - AluSp SINE Alu -20 293 1 221 191 16 0 chr11 80078553 80078575 -70704978 + (TA)n Simple_repeat Simple_repeat 44 64 0 81 21 0 0 chr11 80079496 80079591 -70703962 + AT_rich Low_complexity Low_complexity 1 95 0 282 333 80 7 chr11 80079595 80079745 -70703808 - L2 LINE L2 -623 2691 2531 1115 139 53 37 chr11 80080382 80080626 -70702927 - L1M3 LINE L1 -677 5503 5256 533 241 41 21 chr11 80080634 80080779 -70702774 - MER82 DNA MER2_type -58 595 448 341 332 61 30 chr11 80080829 80080997 -70702556 + MIR SINE MIR 33 205 -57 498 215 0 0 chr11 80081013 80081106 -70702447 - MER82 DNA MER2_type -559 94 2 378 231 19 0 chr11 80081148 80081256 -70702297 + L1MC4 LINE L1 7933 8042 0 440 238 82 0 chr11 80081802 80081949 -70701604 + L1M4 LINE L1 3822 3980 -2166 333 229 14 0 chr11 80082197 80082267 -70701286 + L3 LINE CR1 1384 1454 -123 354 274 34 11 chr11 80082276 80082438 -70701115 - MIR SINE MIR -3 259 4 1903 159 3 17 chr11 80083061 80083363 -70700190 + AluSx SINE Alu 1 298 -14 581 295 50 15 chr11 80083573 80083773 -70699780 + MIR SINE MIR 6 212 -50 503 309 120 4 chr11 80084837 80085065 -70698488 - MIR SINE MIR -3 259 8 * 636 315 25 5 chr11 80085046 80085249 -70698304 + MIR SINE MIR 56 262 0 417 246 8 51 chr11 80085475 80085593 -70697960 - MIR SINE MIR -60 202 90 373 232 49 0 chr11 80085603 80085685 -70697868 + MIR SINE MIR 122 207 -55 2461 90 0 0 chr11 80085813 80086124 -70697429 + AluY SINE Alu 1 311 0 662 281 76 13 chr11 80086325 80086549 -70697004 + MIR SINE MIR 1 238 -24 213 344 90 8 chr11 80086940 80087062 -70696491 - L2 LINE L2 -5 3267 3136 603 317 70 111 chr11 80087762 80088739 -70694814 - L2 LINE L2 -191 3081 2154 199 156 44 22 chr11 80089205 80089250 -70694303 + MIR3 SINE MIR 154 199 -9 1409 181 80 0 chr11 80090025 80090339 -70693214 + L1MC4 LINE L1 6866 7204 -838 1087 218 109 24 chr11 80090334 80090711 -70692842 + L1MC4 LINE L1 7506 7914 -128 * 264 194 15 0 chr11 80090760 80090827 -70692726 + L1MC4 LINE L1 7912 7979 -63 2148 124 0 0 chr11 80091471 80091769 -70691784 - AluSx SINE Alu -14 298 1 884 300 172 12 chr11 80091919 80092512 -70691041 + L2 LINE L2 2552 3256 -57 672 274 60 58 chr11 80092963 80093238 -70690315 + L1ME4a LINE L1 5385 5658 -463 2176 82 0 11 chr11 80093238 80093517 -70690036 + AluSq SINE Alu 1 276 -37 270 0 0 0 chr11 80093521 80093551 -70690002 + (CA)n Simple_repeat Simple_repeat 1 30 0 672 274 60 58 chr11 80093551 80093733 -70689820 + L1ME4a LINE L1 5660 5848 -273 264 243 87 38 chr11 80093878 80094063 -70689490 + L1ME4a LINE L1 5928 6121 0 2531 64 0 6 chr11 80094067 80094380 -70689173 + AluY SINE Alu 1 311 0 585 296 88 35 chr11 80094830 80095056 -70688497 + MIR SINE MIR 1 238 -24 363 96 0 0 chr11 80095065 80095117 -70688436 + (TAA)n Simple_repeat Simple_repeat 1 52 0 2255 91 0 29 chr11 80095990 80096321 -70687232 + AluY SINE Alu 1 322 0 249 277 10 30 chr11 80096712 80096813 -70686740 + MIR SINE MIR 123 221 -41 355 304 93 43 chr11 80097015 80097176 -70686377 - MIR3 SINE MIR -23 185 17 418 289 26 18 chr11 80097262 80097376 -70686177 + MIR SINE MIR 16 130 -132 228 258 106 0 chr11 80097404 80097470 -70686083 + L1MC4 LINE L1 5830 5902 -1906 2339 127 3 3 chr11 80097470 80097831 -70685722 + MER46B DNA MER2_type 1 236 0 1451 72 111 0 chr11 80097891 80098098 -70685455 - MER30 DNA MER1_type 0 230 1 534 70 0 0 chr11 80098118 80098189 -70685364 + (CA)n Simple_repeat Simple_repeat 2 72 0 4248 169 28 7 chr11 80098610 80099594 -70683959 + L1MB7 LINE L1 5101 6099 -85 2068 138 0 3 chr11 80099595 80099899 -70683654 + AluSx SINE Alu 1 303 -9 351 376 42 12 chr11 80100308 80100473 -70683080 + L2 LINE L2 3101 3270 -2 1993 150 0 19 chr11 80100893 80101206 -70682347 - AluJo SINE Alu -5 307 1 322 50 0 0 chr11 80101339 80101379 -70682174 + LTR23 LTR ERV1 321 360 -77 398 167 37 9 chr11 80101409 80101517 -70682036 + (CATA)n Simple_repeat Simple_repeat 2 112 0 3806 159 1 0 chr11 80101732 80102994 -70680559 + L1P5 LINE L1 4529 5791 -360 232 268 24 0 chr11 80103000 80103082 -70680471 + L1MC4 LINE L1 6619 6702 -1340 201 154 0 0 chr11 80103092 80103131 -70680422 + (TA)n Simple_repeat Simple_repeat 1 39 0 2391 88 0 0 chr11 80103308 80103605 -70679948 + AluSc SINE Alu 5 301 -8 2032 155 0 3 chr11 80103613 80103909 -70679644 + AluJo SINE Alu 1 295 -17 2537 72 0 3 chr11 80103911 80104218 -70679335 + AluSx SINE Alu 1 306 -6 229 211 0 0 chr11 80104223 80104275 -70679278 + A-rich Low_complexity Low_complexity 1 52 0 551 266 14 7 chr11 80104290 80104498 -70679055 + MLT1J LTR MaLR 234 493 -18 1782 166 36 0 chr11 80104598 80104876 -70678677 + AluJb SINE Alu 1 288 -24 1064 186 0 10 chr11 80104891 80105084 -70678469 + AluJb SINE Alu 120 310 -2 189 250 21 0 chr11 80105567 80105615 -70677938 + L2 LINE L2 3214 3262 -10 223 344 0 0 chr11 80105835 80105899 -70677654 + L2 LINE L2 3186 3249 -23 1032 98 0 182 chr11 80106057 80106293 -70677260 + 7SK RNA RNA 1 193 0 2450 93 3 0 chr11 80106776 80107088 -70676465 - AluSq SINE Alu 0 313 1 253 252 104 26 chr11 80107253 80107368 -70676185 - L2 LINE L2 -252 3020 2897 2069 121 47 0 chr11 80107607 80107905 -70675648 + AluSx SINE Alu 1 312 0 266 314 98 0 chr11 80108550 80108652 -70674901 - L2 LINE L2 -10 3262 3151 1859 171 13 3 chr11 80108685 80108990 -70674563 + AluSx SINE Alu 1 308 -4 1650 158 16 32 chr11 80109078 80109394 -70674159 + AluJo SINE Alu 1 311 -1 289 311 131 0 chr11 80109477 80109660 -70673893 - L2 LINE L2 -254 3018 2812 1867 170 7 3 chr11 80110222 80110522 -70673031 + AluJb SINE Alu 2 302 -10 181 200 0 0 chr11 80110561 80110596 -70672957 + L2 LINE L2 3263 3297 -16 312 281 9 58 chr11 80110735 80110872 -70672681 - MIR SINE MIR -65 143 12 245 200 0 0 chr11 80110882 80110927 -70672626 + LTR33 LTR ERVL 477 521 0 2099 128 7 3 chr11 80111354 80111644 -70671909 - AluSx SINE Alu -21 291 1 2490 85 3 0 chr11 80111671 80111977 -70671576 + AluSp SINE Alu 1 307 -6 1789 155 0 4 chr11 80111994 80112272 -70671281 + AluSx SINE Alu 28 304 -8 1801 154 20 26 chr11 80112427 80112732 -70670821 + AluJo SINE Alu 1 303 -9 1259 164 61 78 chr11 80113093 80113386 -70670167 - AluJo SINE Alu -24 288 1 351 0 0 0 chr11 80113423 80113462 -70670091 + (CA)n Simple_repeat Simple_repeat 2 40 0 2269 101 10 0 chr11 80114143 80114439 -70669114 - AluSg SINE Alu -11 299 1 2252 110 0 0 chr11 80114593 80114884 -70668669 + AluSg SINE Alu 1 291 -19 911 157 102 30 chr11 80114932 80115098 -70668455 + FAM SINE Alu 1 49 0 234 317 70 28 chr11 80115175 80115317 -70668236 + MIR SINE MIR 5 152 -110 201 154 51 0 chr11 80115333 80115372 -70668181 + (TATATG)n Simple_repeat Simple_repeat 1 41 0 3514 132 0 31 chr11 80115501 80116045 -70667508 - MER1A DNA MER1_type 0 527 1 296 212 15 0 chr11 80116889 80116955 -70666598 + MER91 DNA MER1_type 74 140 0 * 429 335 74 29 chr11 80116955 80117192 -70666361 - L2 LINE L2 -35 3237 2990 313 266 91 84 chr11 80117304 80117452 -70666101 - L2 LINE L2 -18 3295 3143 1729 165 14 14 chr11 80117452 80117743 -70665810 + AluJo SINE Alu 1 291 -21 313 266 91 84 chr11 80117743 80117880 -70665673 - L2 LINE L2 -170 3143 3008 613 266 117 46 chr11 80118044 80118224 -70665329 - L2 LINE L2 -263 3009 2843 2148 117 7 0 chr11 80118224 80118514 -70665039 + AluSx SINE Alu 1 292 -20 613 266 117 46 chr11 80118514 80118678 -70664875 - L2 LINE L2 -429 2843 2643 196 329 24 0 chr11 80118708 80118790 -70664763 + L2 LINE L2 2644 2727 -587 853 187 18 6 chr11 80118834 80119000 -70664553 - AluJb SINE Alu -14 298 131 459 171 0 0 chr11 80119004 80119080 -70664473 - AluJb SINE Alu -152 160 85 242 286 0 0 chr11 80119105 80119161 -70664392 - L2 LINE L2 -33 3280 3225 1762 154 6 38 chr11 80120637 80120956 -70662597 + AluJo SINE Alu 3 311 -1 1028 239 79 22 chr11 80121109 80121514 -70662039 + L1ME LINE L1 5353 5780 -341 2172 120 0 19 chr11 80121615 80121932 -70661621 + AluSx SINE Alu 1 311 -1 2277 96 7 0 chr11 80121983 80122276 -70661277 + AluSp SINE Alu 1 295 -18 239 168 40 109 chr11 80122278 80122379 -70661174 + L1 LINE L1 4735 4828 -1318 2498 36 4 0 chr11 80122387 80122710 -70660843 + AluY SINE Alu 1 324 0 1569 183 0 7 chr11 80122721 80122995 -70660558 + AluJo SINE Alu 1 272 -40 607 289 95 28 chr11 80122998 80123251 -70660302 + AluJo SINE Alu 29 298 -14 2064 137 7 0 chr11 80123320 80123613 -70659940 - AluSp SINE Alu -18 295 1 1965 124 10 10 chr11 80123716 80124035 -70659518 - AluSx SINE Alu 0 312 1 2203 100 7 3 chr11 80124039 80124330 -70659223 - AluSx SINE Alu -16 296 5 1497 199 24 20 chr11 80124340 80124636 -70658917 - AluJo SINE Alu -15 297 1 2474 77 0 0 chr11 80124687 80124987 -70658566 - AluY SINE Alu -11 300 1 665 254 144 74 chr11 80125183 80125273 -70658280 + L1MC/D LINE L1 5255 5337 -916 2241 107 0 7 chr11 80125273 80125562 -70657991 + AluSx SINE Alu 1 287 -25 665 254 144 74 chr11 80125562 80125688 -70657865 + L1MC/D LINE L1 5337 5453 -800 2213 114 0 3 chr11 80125696 80125993 -70657560 + AluSx SINE Alu 1 296 -16 225 83 0 0 chr11 80125993 80126029 -70657524 + (TA)n Simple_repeat Simple_repeat 2 37 0 687 254 0 40 chr11 80126029 80126192 -70657361 - FAM SINE Alu -150 161 1 665 254 144 74 chr11 80126192 80126450 -70657103 + L1MC/D LINE L1 5453 5761 -492 2288 83 7 3 chr11 80126561 80126850 -70656703 + AluY SINE Alu 1 290 -21 326 35 404 0 chr11 80126967 80127024 -70656529 + MADE1 DNA Mariner 1 80 0 1002 305 61 43 chr11 80127288 80127895 -70655658 + L2 LINE L2 1692 2309 -1005 1915 89 7 14 chr11 80127908 80128188 -70655365 + L1PA7 LINE L1 5877 6154 0 2387 87 3 0 chr11 80128209 80128508 -70655045 - AluSp SINE Alu -13 300 1 200 247 14 41 chr11 80128857 80128930 -70654623 + MIR SINE MIR 186 256 -6 21 0 0 0 chr11 80129179 80129200 -70654353 + AT_rich Low_complexity Low_complexity 1 21 0 2266 86 10 0 chr11 80129220 80129512 -70654041 - AluY SINE Alu -6 305 11 1057 163 42 47 chr11 80129587 80129802 -70653751 - AluJo SINE Alu -12 300 87 2544 57 0 3 chr11 80129810 80130108 -70653445 - AluSq SINE Alu -16 297 1 259 264 217 0 chr11 80130124 80130230 -70653323 - MIR SINE MIR -122 140 12 2440 82 0 3 chr11 80130809 80131115 -70652438 + AluSq SINE Alu 1 305 -8 213 270 167 8 chr11 80131159 80131285 -70652268 + MIR SINE MIR 111 256 -6 2077 137 13 0 chr11 80131579 80131879 -70651674 + AluSx SINE Alu 3 306 -6 943 248 133 88 chr11 80132061 80132801 -70650752 - L2 LINE L2 0 3313 2608 1822 152 45 7 chr11 80132801 80133090 -70650463 + AluJb SINE Alu 1 300 -12 943 248 133 88 chr11 80133090 80133150 -70650403 - L2 LINE L2 -705 2608 2552 2231 108 3 7 chr11 80133150 80133457 -70650096 + AluSx SINE Alu 1 306 -6 943 248 133 88 chr11 80133457 80133579 -70649974 - L2 LINE L2 -761 2552 2342 2191 109 18 0 chr11 80134178 80134463 -70649090 + AluSg SINE Alu 1 290 -20 2285 104 0 7 chr11 80134530 80134838 -70648715 + AluSg SINE Alu 1 306 -4 328 222 16 0 chr11 80134890 80134961 -70648592 - FRAM SINE Alu -66 100 38 1624 124 53 37 chr11 80135116 80135317 -70648236 + L1MC3 LINE L1 7458 7667 -118 2171 122 0 10 chr11 80135317 80135620 -70647933 + AluSx SINE Alu 1 300 -12 1624 124 53 37 chr11 80135620 80135741 -70647812 + L1MC3 LINE L1 7667 7785 0 1822 176 10 13 chr11 80135751 80136057 -70647496 + AluJb SINE Alu 1 305 -7 1777 174 30 3 chr11 80136107 80136440 -70647113 + L1MB8 LINE L1 5837 6178 0 358 259 146 25 chr11 80136939 80137097 -70646456 - MIR SINE MIR -82 180 4 2641 55 3 0 chr11 80137637 80137949 -70645604 + AluSp SINE Alu 1 313 0 24 0 0 0 chr11 80138401 80138425 -70645128 + AT_rich Low_complexity Low_complexity 1 24 0 334 260 116 70 chr11 80138433 80138492 -70645061 - MIR SINE MIR -7 255 200 861 132 8 0 chr11 80138492 80138621 -70644932 - FLAM_C SINE Alu -3 130 1 334 260 116 70 chr11 80138621 80138803 -70644750 - MIR SINE MIR -62 200 3 354 200 148 102 chr11 80138874 80138958 -70644595 - MIR SINE MIR -8 254 175 1157 153 5 5 chr11 80138958 80139147 -70644406 - L1PB4 LINE L1 -3 6153 5965 354 200 148 102 chr11 80139147 80139281 -70644272 - MIR SINE MIR -87 175 16 1318 166 19 0 chr11 80139383 80139588 -70643965 - AluJb SINE Alu -17 295 87 2204 129 0 3 chr11 80139726 80140037 -70643516 - AluSg SINE Alu 0 310 1 437 318 10 41 chr11 80140132 80140327 -70643226 - L3 LINE CR1 -169 1408 1220 1966 109 13 51 chr11 80140353 80140664 -70642889 + AluSx SINE Alu 1 299 -13 192 333 0 95 chr11 80140758 80140863 -70642690 + MIR SINE MIR 17 111 -151 4354 188 80 15 chr11 80140869 80141669 -70641884 - MER52A LTR ERV1 0 1755 1008 2079 116 24 7 chr11 80141669 80141962 -70641591 - AluSq SINE Alu -13 300 3 4354 188 80 15 chr11 80141962 80142719 -70640834 - MER52A LTR ERV1 -747 1008 12 1241 183 17 39 chr11 80142719 80142941 -70640612 + L1MB7 LINE L1 5913 6095 -89 2243 76 14 3 chr11 80142941 80143231 -70640322 + AluY SINE Alu 1 293 -18 1241 183 17 39 chr11 80143231 80143297 -70640256 + L1MB7 LINE L1 6095 6161 -23 2216 85 0 49 chr11 80143399 80143533 -70640020 + AluSx SINE Alu 14 153 -159 2085 125 0 16 chr11 80143533 80143837 -70639716 + AluSx SINE Alu 1 299 -13 2216 85 0 49 chr11 80143837 80144008 -70639545 + AluSx SINE Alu 153 304 -8 2237 114 3 0 chr11 80144175 80144474 -70639079 - AluSp SINE Alu -13 300 1 1637 155 0 93 chr11 80144487 80144505 -70639048 - AluJb SINE Alu -15 297 279 419 35 0 17 chr11 80144505 80144563 -70638990 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 1637 155 0 93 chr11 80144563 80144741 -70638812 - AluJb SINE Alu -33 279 140 832 101 0 36 chr11 80144741 80144879 -70638674 + FLAM_C SINE Alu 1 133 0 1637 155 0 93 chr11 80144879 80145003 -70638550 - AluJb SINE Alu -172 140 6 332 343 153 27 chr11 80145113 80145382 -70638171 + L2 LINE L2 2897 3226 -87 2286 104 3 3 chr11 80145382 80145681 -70637872 + AluSp SINE Alu 1 299 -14 332 343 153 27 chr11 80145681 80145778 -70637775 + L2 LINE L2 3226 3309 -4 332 267 35 0 chr11 80145769 80145885 -70637668 + MIR SINE MIR 92 211 -51 675 206 0 0 chr11 80146695 80146821 -70636732 + FLAM_A SINE Alu 5 130 -3 213 188 146 21 chr11 80146862 80146910 -70636643 + MIR SINE MIR 20 73 -135 2089 127 0 16 chr11 80147031 80147339 -70636214 + AluJb SINE Alu 3 305 -7 1487 163 13 33 chr11 80147563 80147870 -70635683 + AluJb SINE Alu 1 301 -11 1879 139 0 30 chr11 80147881 80148176 -70635377 + AluJb SINE Alu 13 298 -14 184 256 122 12 chr11 80148178 80148260 -70635293 + MIR SINE MIR 63 153 -109 252 281 34 22 chr11 80148380 80148469 -70635084 - MIR SINE MIR -36 226 137 2225 62 33 0 chr11 80148789 80149091 -70634462 - AluSp SINE Alu 0 311 1 2171 89 27 3 chr11 80149128 80149421 -70634132 + AluY SINE Alu 1 300 -11 388 252 153 0 chr11 80149455 80149566 -70633987 - MIR SINE MIR -115 147 20 542 226 47 0 chr11 80150592 80150698 -70632855 + MER81 DNA DNA 4 114 0 1034 183 21 5 chr11 80150737 80150923 -70632630 + MER5A DNA MER1_type 1 189 0 276 299 30 22 chr11 80150997 80151131 -70632422 - L2 LINE L2 -465 2849 2715 296 199 166 40 chr11 80151135 80151286 -70632267 - L1MC4a LINE L1 -1873 5935 5766 180 296 0 0 chr11 80151305 80151349 -70632204 - L2 LINE L2 -223 3049 3006 2211 88 34 17 chr11 80151417 80151712 -70631841 - AluSg SINE Alu -10 300 1 1803 178 14 3 chr11 80151749 80152041 -70631512 - AluJb SINE Alu -17 295 1 2480 83 3 0 chr11 80152468 80152770 -70630783 + AluSp SINE Alu 1 303 -10 2341 88 7 7 chr11 80152782 80153090 -70630463 + AluY SINE Alu 1 308 -3 1211 147 131 95 chr11 80153099 80153164 -70630389 + L1MA7 LINE L1 5911 5972 -319 2027 140 0 0 chr11 80153164 80153456 -70630097 + AluSx SINE Alu 7 298 -14 273 98 0 0 chr11 80153456 80153497 -70630056 + (TA)n Simple_repeat Simple_repeat 1 41 0 1211 147 131 95 chr11 80153497 80153797 -70629756 + L1MA7 LINE L1 5971 6290 -1 310 155 0 17 chr11 80154373 80154431 -70629122 - L1MC4 LINE L1 -1 8041 7985 23 33 0 0 chr11 80154447 80154477 -70629076 + AT_rich Low_complexity Low_complexity 1 30 0 369 217 6 161 chr11 80154477 80154532 -70629021 - L1MC4 LINE L1 -40 8002 7940 2331 98 3 0 chr11 80154532 80154827 -70628726 - AluSx SINE Alu -16 296 1 369 217 6 161 chr11 80154827 80154951 -70628602 - L1MC4 LINE L1 -102 7940 7851 536 163 39 23 chr11 80154963 80155092 -70628461 + MLT2D LTR ERVL 1 131 -333 792 191 0 0 chr11 80155112 80155253 -70628300 + AluJb SINE Alu 166 306 -6 1133 163 69 45 chr11 80155253 80155498 -70628055 + MLT2D LTR ERVL 116 366 -48 1684 175 22 43 chr11 80155588 80155891 -70627662 - L1M4 LINE L1 -382 5802 5507 2160 105 23 0 chr11 80155891 80156195 -70627358 - AluSq SINE Alu -2 311 1 1684 175 22 43 chr11 80156195 80156262 -70627291 - L1M4 LINE L1 -677 5507 5440 * 3289 197 64 39 chr11 80156230 80157054 -70626499 - L1MC4a LINE L1 -500 7308 6464 324 180 30 0 chr11 80157255 80157332 -70626221 + L1M4 LINE L1 5352 5431 -743 232 295 122 0 chr11 80157362 80157470 -70626083 - MIR SINE MIR -51 157 37 654 133 19 0 chr11 80157545 80157650 -70625903 - FLAM_C SINE Alu -18 125 19 282 323 32 24 chr11 80157689 80157813 -70625740 - MIR SINE MIR -67 195 71 261 83 0 0 chr11 80158266 80158302 -70625251 + (T)n Simple_repeat Simple_repeat 1 36 0 7997 29 13 275 chr11 80158304 80160175 -70623378 - SVA Other Other -4 1382 2 242 28 0 28 chr11 80160176 80160212 -70623341 + (GGGAGA)n Simple_repeat Simple_repeat 1 35 0 2392 69 0 3 chr11 80160267 80160573 -70622980 - AluY SINE Alu -6 305 1 230 127 0 0 chr11 80161337 80161374 -70622179 - MIR SINE MIR -113 149 114 411 26 78 0 chr11 80161776 80161853 -70621700 + CT-rich Low_complexity Low_complexity 2 84 0 1037 127 6 23 chr11 80161857 80162030 -70621523 - AluSq SINE Alu -39 274 105 2236 94 7 0 chr11 80162304 80162612 -70620941 - AluSx SINE Alu 0 312 3 456 242 81 16 chr11 80163659 80163783 -70619770 + MER94 DNA DNA 3 134 0 2289 181 35 10 chr11 80163809 80164300 -70619253 - L1MB4 LINE L1 0 6180 5678 343 147 40 0 chr11 80164317 80164392 -70619161 - L1MB4 LINE L1 -697 5473 5396 2102 93 0 14 chr11 80164397 80164525 -70619028 + AluSc SINE Alu 6 134 -175 2083 97 0 13 chr11 80164525 80164823 -70618730 + AluSc SINE Alu 3 296 -13 2102 93 0 14 chr11 80164823 80164983 -70618570 + AluSc SINE Alu 134 290 -19 2368 59 7 0 chr11 80164996 80165301 -70618252 - AluY SINE Alu -4 307 1 2099 93 0 0 chr11 80165305 80165639 -70617914 - AluSg SINE Alu 0 334 1 830 152 0 8 chr11 80165656 80165788 -70617765 - FLAM_C SINE Alu -12 131 1 2069 118 0 13 chr11 80165855 80166161 -70617392 + AluSx SINE Alu 2 303 -9 31 44 0 0 chr11 80166219 80166264 -70617289 + AT_rich Low_complexity Low_complexity 1 45 0 716 195 0 0 chr11 80166264 80166382 -70617171 - FLAM_C SINE Alu -15 118 1 3946 50 8 0 chr11 80166894 80167379 -70616174 - SVA Other Other -2 1384 896 28 29 0 0 chr11 80167482 80167517 -70616036 + GC_rich Low_complexity Low_complexity 1 35 0 246 105 0 0 chr11 80167534 80167572 -70615981 + (A)n Simple_repeat Simple_repeat 1 38 0 242 237 175 21 chr11 80167673 80167770 -70615783 - MIR3 SINE MIR -82 126 15 1966 101 35 0 chr11 80168468 80168754 -70614799 - AluSx SINE Alu -16 296 1 468 282 82 24 chr11 80169077 80169247 -70614306 - MIR SINE MIR -10 252 73 2143 104 7 0 chr11 80169379 80169676 -70613877 + AluSg SINE Alu 1 299 -11 2509 46 0 3 chr11 80169814 80170120 -70613433 + AluY SINE Alu 1 305 -6 848 221 0 0 chr11 80170120 80170283 -70613270 + AluJo/FRAM SINE Alu 134 296 -16 403 219 179 0 chr11 80170503 80170626 -70612927 - MIR SINE MIR -56 206 62 300 79 0 0 chr11 80170829 80170867 -70612686 + AluJb SINE Alu 71 108 -194 2255 84 3 0 chr11 80171412 80171720 -70611833 + AluSg SINE Alu 2 310 0 2031 127 3 0 chr11 80171950 80172257 -70611296 + AluJb SINE Alu 1 308 -4 1546 186 0 39 chr11 80172310 80172451 -70611102 + AluJo SINE Alu 3 148 -164 2378 72 0 0 chr11 80172451 80172756 -70610797 + AluY SINE Alu 1 305 -6 2480 54 0 19 chr11 80172756 80173070 -70610483 + AluY SINE Alu 1 308 -3 1546 186 0 39 chr11 80173070 80173233 -70610320 + AluJo SINE Alu 146 296 -16 403 219 179 0 chr11 80173453 80173576 -70609977 - MIR SINE MIR -56 206 62 300 79 0 0 chr11 80173779 80173817 -70609736 + AluJb SINE Alu 71 108 -194 2215 85 10 0 chr11 80174363 80174668 -70608885 + AluSg SINE Alu 2 309 -1 242 237 175 21 chr11 80174778 80174875 -70608678 - MIR3 SINE MIR -82 126 15 1966 101 35 0 chr11 80175573 80175859 -70607694 - AluSx SINE Alu -16 296 1 455 288 82 24 chr11 80176182 80176352 -70607201 - MIR SINE MIR -10 252 73 2152 104 7 0 chr11 80176484 80176782 -70606771 + AluSg SINE Alu 1 300 -10 2369 41 7 0 chr11 80176920 80177212 -70606341 + AluY SINE Alu 1 294 -17 2009 112 14 7 chr11 80177219 80177521 -70606032 - AluSq SINE Alu 0 304 1 1905 92 19 7 chr11 80177536 80177807 -70605746 - AluSx SINE Alu -19 293 20 1463 201 0 24 chr11 80177839 80178132 -70605421 - AluJb SINE Alu -26 286 1 688 211 21 47 chr11 80178136 80178326 -70605227 - AluJo SINE Alu -10 302 118 229 331 84 48 chr11 80178348 80178514 -70605039 - L2 LINE L2 -593 2721 2550 738 142 39 16 chr11 80178823 80178950 -70604603 - AluJo SINE Alu -180 132 3 248 139 0 0 chr11 80179069 80179105 -70604448 - Alu SINE Alu -265 36 1 216 0 0 0 chr11 80179628 80179652 -70603901 + (T)n Simple_repeat Simple_repeat 1 24 0 374 335 35 84 chr11 80179785 80180229 -70603324 - L2 LINE L2 0 3272 2852 1779 156 3 20 chr11 80180229 80180531 -70603022 + AluJo SINE Alu 1 297 -15 374 335 35 84 chr11 80180531 80180572 -70602981 - L2 LINE L2 -420 2852 2811 866 58 0 0 chr11 80180705 80180809 -70602744 - AluSq/x SINE Alu -186 127 24 1332 146 112 0 chr11 80180809 80181042 -70602511 + AluSx SINE Alu 42 300 -12 302 276 123 94 chr11 80181066 80181269 -70602284 + L3 LINE CR1 1215 1423 -154 200 298 179 58 chr11 80181293 80181639 -70601914 - L2 LINE L2 -19 3253 2866 2306 92 0 0 chr11 80181743 80182046 -70601507 + AluSq SINE Alu 1 303 -10 197 260 39 48 chr11 80182070 80182174 -70601379 - L2 LINE L2 -989 2325 2223 213 191 243 9 chr11 80183780 80183867 -70599686 - MIR SINE MIR -74 188 76 185 255 38 94 chr11 80183904 80184010 -70599543 - L2 LINE L2 -493 2821 2722 393 22 0 0 chr11 80184928 80184974 -70598579 + (TA)n Simple_repeat Simple_repeat 2 47 0 2440 74 6 47 chr11 80184974 80185214 -70598339 + L1PB1 LINE L1 5796 6018 -133 2240 94 3 0 chr11 80185214 80185513 -70598040 + AluSp SINE Alu 1 300 -13 2440 74 6 47 chr11 80185513 80185635 -70597918 + L1PB1 LINE L1 6018 6143 -8 417 339 127 5 chr11 80186214 80186435 -70597118 - MIR SINE MIR 0 262 15 2020 139 0 7 chr11 80186488 80186791 -70596762 - AluJb SINE Alu -11 301 1 2061 126 0 0 chr11 80187217 80187511 -70596042 - AluSx SINE Alu -13 299 6 383 198 110 0 chr11 80187597 80187688 -70595865 + MER3 DNA MER1_type 105 205 -4 5298 61 0 0 chr11 80187708 80188362 -70595191 - L1PA6 LINE L1 0 6154 5501 216 291 12 111 chr11 80188402 80188456 -70595097 - L2 LINE L2 -307 2965 2907 898 152 8 0 chr11 80188456 80188588 -70594965 + FLAM_C SINE Alu 1 133 0 216 291 12 111 chr11 80188588 80188705 -70594848 - L2 LINE L2 -365 2907 2811 351 313 120 34 chr11 80188732 80188905 -70594648 + MIR SINE MIR 1 196 -66 2084 123 0 7 chr11 80188905 80189213 -70594340 + AluSx SINE Alu 1 306 -6 351 313 120 34 chr11 80189213 80189247 -70594306 + MIR SINE MIR 196 226 -36 304 317 156 6 chr11 80189970 80190150 -70593403 + L3 LINE CR1 1206 1412 -165 583 309 69 18 chr11 80190285 80190502 -70593051 + MIR SINE MIR 1 228 -34 369 333 106 0 chr11 80190960 80191083 -70592470 - L2 LINE L2 0 3272 3137 1897 97 30 0 chr11 80191332 80191600 -70591953 - AluSq SINE Alu -13 300 25 861 164 97 53 chr11 80191983 80192190 -70591363 - MER20 DNA MER1_type 0 219 4 2264 233 124 72 chr11 80192610 80192777 -70590776 - HAL1 LINE L1 -4 2503 2346 1361 174 56 11 chr11 80192777 80193047 -70590506 - AluJo SINE Alu -30 282 1 2264 233 124 72 chr11 80193047 80193979 -70589574 - HAL1 LINE L1 -161 2346 1347 1956 210 41 90 chr11 80194000 80194056 -70589497 - L1MB3 LINE L1 -5 6178 6121 2094 113 3 3 chr11 80194056 80194357 -70589196 + AluSx SINE Alu 1 301 -11 1956 210 41 90 chr11 80194357 80194608 -70588945 - L1MB3 LINE L1 -62 6121 5859 1512 162 35 21 chr11 80194608 80194898 -70588655 - AluJb SINE Alu -18 294 1 1956 210 41 90 chr11 80194898 80195463 -70588090 - L1MB3 LINE L1 -324 5859 5384 2327 68 0 3 chr11 80195463 80195758 -70587795 - AluY SINE Alu -17 294 1 1956 210 41 90 chr11 80195758 80196130 -70587423 - L1MB3 LINE L1 -799 5384 4995 257 0 30 0 chr11 80196130 80196163 -70587390 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 4704 21 0 0 chr11 80196163 80196681 -70586872 - SVA Other Other -23 1363 846 9664 34 5 136 chr11 80197058 80198622 -70584931 - SVA Other Other -27 1359 1 222 0 0 73 chr11 80198622 80198663 -70584890 + (GGGAGA)n Simple_repeat Simple_repeat 2 39 0 1963 178 26 28 chr11 80198669 80198718 -70584835 - L1MB3 LINE L1 -1144 5002 4954 1631 170 7 26 chr11 80198718 80199024 -70584529 - AluJo SINE Alu -12 300 1 1963 178 26 28 chr11 80199024 80199396 -70584157 - L1MB3 LINE L1 -1192 4954 4582 307 169 102 0 chr11 80199398 80199457 -70584096 - L1MB3 LINE L1 -1621 4525 4461 831 169 121 6 chr11 80199457 80199623 -70583930 - AluJb SINE Alu -9 303 119 1072 143 0 0 chr11 80199668 80199829 -70583724 + AluSg/x SINE Alu 135 295 -15 512 269 8 0 chr11 80199876 80200010 -70583543 - L1MB3 LINE L1 -2282 3864 3730 1757 116 49 18 chr11 80200065 80200350 -70583203 - AluSx SINE Alu -4 308 15 1957 144 0 0 chr11 80200560 80200866 -70582687 + AluSx SINE Alu 1 306 -6 399 324 130 5 chr11 80200876 80201083 -70582470 - MIR SINE MIR -27 235 3 252 321 66 10 chr11 80201631 80201799 -70581754 - MIR SINE MIR -57 151 9 213 316 92 26 chr11 80202203 80202279 -70581274 - L2 LINE L2 -3 3310 3230 231 305 137 11 chr11 80202411 80202506 -70581047 - MIR SINE MIR -67 141 35 754 258 122 9 chr11 80202574 80202795 -70580758 - MIR SINE MIR -11 251 6 811 212 0 93 chr11 80202843 80203036 -70580517 + FAM SINE Alu 1 175 0 22 35 0 0 chr11 80203138 80203167 -70580386 + AT_rich Low_complexity Low_complexity 1 29 0 1365 177 12 4 chr11 80203232 80203481 -70580072 - AluJo SINE Alu -26 286 36 652 192 32 16 chr11 80203628 80203753 -70579800 + MLT1E3 LTR MaLR 1 127 -497 925 181 0 0 chr11 80203761 80203921 -70579632 - AluJb SINE Alu -15 297 138 526 234 171 6 chr11 80203923 80204098 -70579455 + MLT1E3 LTR MaLR 88 291 -335 282 322 141 62 chr11 80204277 80204317 -70579236 - L3 LINE CR1 -13 1564 1529 2032 114 23 0 chr11 80204317 80204625 -70578928 + L1PA16 LINE L1 5852 6166 0 282 322 141 62 chr11 80204625 80204811 -70578742 - L3 LINE CR1 -48 1529 1320 435 258 156 0 chr11 80205041 80205169 -70578384 + MIR SINE MIR 112 259 -3 1581 54 34 5 chr11 80205242 80205446 -70578107 + L1PA7 LINE L1 5944 6153 -1 763 146 0 0 chr11 80205509 80205619 -70577934 - FLAM_A SINE Alu -1 141 32 548 310 92 22 chr11 80205620 80205891 -70577662 + L2 LINE L2 3024 3313 0 240 306 141 0 chr11 80205888 80205973 -70577580 - L3 LINE CR1 -465 1112 1016 * 25 65 0 0 chr11 80206025 80206071 -70577482 + AT_rich Low_complexity Low_complexity 1 46 0 2330 105 0 3 chr11 80206071 80206375 -70577178 - AluSx SINE Alu -9 303 1 222 298 40 32 chr11 80207609 80207733 -70575820 + MIR SINE MIR 125 249 -13 373 335 62 26 chr11 80207787 80207981 -70575572 + L2 LINE L2 3107 3307 -6 199 327 71 9 chr11 80208919 80209032 -70574521 - MIR SINE MIR -4 258 139 250 241 35 35 chr11 80210128 80210215 -70573338 - L2 LINE L2 -1 3312 3226 1776 141 3 25 chr11 80210216 80210499 -70573054 + AluJo SINE Alu 14 290 -22 21 71 0 0 chr11 80210963 80211005 -70572548 + AT_rich Low_complexity Low_complexity 1 42 0 209 303 8 59 chr11 80211090 80211209 -70572344 - L2 LINE L2 -218 3054 2942 1167 127 0 18 chr11 80211847 80212013 -70571540 - FRAM SINE Alu -20 156 1 23 0 0 0 chr11 80212013 80212036 -70571517 + AT_rich Low_complexity Low_complexity 1 23 0 426 266 70 8 chr11 80212202 80212374 -70571179 + MIR SINE MIR 11 192 -58 1851 90 75 15 chr11 80212642 80212936 -70570617 + AluSq SINE Alu 1 310 0 3449 174 73 1 chr11 80212964 80213650 -70569903 - L1MB4 LINE L1 -10 6170 5436 596 86 0 12 chr11 80214204 80214285 -70569268 - MADE1 DNA Mariner 0 80 1 2603 189 50 55 chr11 80214453 80215088 -70568465 - LTR27 LTR ERV1 -2 634 3 265 282 82 9 chr11 80215203 80215313 -70568240 + L2 LINE L2 3155 3272 0 315 289 41 21 chr11 80215416 80215513 -70568040 + MIR SINE MIR 20 118 -90 235 320 120 0 chr11 80216015 80216140 -70567413 + MIR SINE MIR 13 152 -110 636 246 80 15 chr11 80217012 80217211 -70566342 + MIR SINE MIR 28 239 -23 617 110 12 0 chr11 80217366 80217448 -70566105 + AluJ/FLAM SINE Alu 2 84 -228 488 224 67 0 chr11 80218512 80218646 -70564907 + MIR SINE MIR 81 223 -39 185 375 54 30 chr11 80219112 80219280 -70564273 + L2 LINE L2 2921 3092 -180 1753 169 20 53 chr11 80219765 80220121 -70563432 + MER2 DNA MER2_type 1 344 0 374 133 17 0 chr11 80220930 80220990 -70562563 + MER96 DNA MER1_type? 112 172 -3 234 355 48 42 chr11 80222211 80222379 -70561174 - MIR SINE MIR -86 176 3 297 242 0 53 chr11 80222537 80222632 -70560921 - MIR SINE MIR -15 247 158 187 244 122 73 chr11 80222859 80222941 -70560612 - L2 LINE L2 -54 3218 3133 525 251 126 36 chr11 80223517 80223574 -70559979 + MER112 DNA MER1_type 9 59 -201 321 68 0 0 chr11 80223574 80223618 -70559935 + (CA)n Simple_repeat Simple_repeat 2 45 0 525 251 126 36 chr11 80223618 80223783 -70559770 + MER112 DNA MER1_type 59 251 -9 844 281 0 55 chr11 80224063 80224337 -70559216 - MIR SINE MIR 0 262 4 535 279 20 20 chr11 80224339 80224540 -70559013 - L1ME LINE L1 -369 5752 5552 883 141 0 16 chr11 80225055 80225183 -70558370 - FLAM_A SINE Alu -6 127 2 235 262 251 21 chr11 80225509 80225670 -70557883 - MIR SINE MIR -65 197 3 267 31 0 0 chr11 80225734 80225766 -70557787 + (CA)n Simple_repeat Simple_repeat 1 32 0 22 35 0 0 chr11 80227426 80227455 -70556098 + AT_rich Low_complexity Low_complexity 1 29 0 615 226 82 7 chr11 80227549 80227817 -70555736 - L1ME1 LINE L1 -9 6157 5720 2189 118 0 10 chr11 80227817 80228131 -70555422 - AluSx SINE Alu -1 311 1 261 276 198 8 chr11 80228205 80228389 -70555164 - MIR SINE MIR -14 248 20 461 216 34 132 chr11 80228523 80228727 -70554826 + MER5A DNA MER1_type 1 184 -5 235 250 0 0 chr11 80228732 80228784 -70554769 + MIR3 SINE MIR 154 205 -3 297 314 69 0 chr11 80228875 80228992 -70554561 + MIR SINE MIR 40 163 -91 274 234 146 76 chr11 80229452 80229610 -70553943 - L2 LINE L2 0 3272 3104 298 311 148 16 chr11 80229702 80229946 -70553607 - L2 LINE L2 -454 2860 2585 1862 253 116 4 chr11 80230218 80230701 -70552852 + MLT1H LTR MaLR 13 549 0 269 295 113 77 chr11 80231270 80231324 -70552229 + MLT1H-int LTR MaLR 1024 1075 -296 1767 124 95 3 chr11 80231324 80231607 -70551946 - AluSx SINE Alu -2 310 2 269 295 113 77 chr11 80231607 80231888 -70551665 + MLT1H-int LTR MaLR 1075 1371 0 2124 241 63 19 chr11 80231888 80232411 -70551142 + MLT1H LTR MaLR 1 546 -3 234 274 104 7 chr11 80232471 80232606 -70550947 + L1MC5 LINE L1 7782 7929 -32 860 241 55 47 chr11 80232639 80232713 -70550840 + L2 LINE L2 2118 2190 -1124 2518 60 0 3 chr11 80232713 80233012 -70550541 - AluY SINE Alu -13 298 1 860 241 55 47 chr11 80233012 80233190 -70550363 + L2 LINE L2 2190 2372 -942 1512 176 77 35 chr11 80233192 80233505 -70550048 + MLT1F LTR MaLR 1 326 -216 239 314 97 66 chr11 80233767 80233993 -70549560 - L2 LINE L2 -39 3233 3001 318 317 191 10 chr11 80234305 80234504 -70549049 + L3 LINE CR1 1334 1568 -9 248 279 116 48 chr11 80234883 80235030 -70548523 + LTR67 LTR ERVL 113 269 -288 221 0 0 33 chr11 80235420 80235450 -70548103 + (TCTCCC)n Simple_repeat Simple_repeat 1 29 0 4476 58 3 0 chr11 80235451 80236016 -70547537 + SVA Other Other 52 618 -768 200 222 0 0 chr11 80236119 80236164 -70547389 + A-rich Low_complexity Low_complexity 1 45 0 763 146 0 0 chr11 80236201 80236311 -70547242 - FLAM_A SINE Alu -1 141 32 520 310 92 22 chr11 80236312 80236583 -70546970 + L2 LINE L2 3024 3313 0 240 306 141 0 chr11 80236580 80236665 -70546888 - L3 LINE CR1 -465 1112 1016 * 202 220 0 0 chr11 80236715 80236765 -70546788 + (TA)n Simple_repeat Simple_repeat 1 50 0 2213 111 0 10 chr11 80236765 80237071 -70546482 - AluSx SINE Alu -9 303 1 222 298 40 32 chr11 80238305 80238429 -70545124 + MIR SINE MIR 125 249 -13 373 335 62 26 chr11 80238483 80238677 -70544876 + L2 LINE L2 3107 3307 -6 199 327 71 9 chr11 80239584 80239697 -70543856 - MIR SINE MIR -4 258 139 250 241 35 35 chr11 80240793 80240880 -70542673 - L2 LINE L2 -1 3312 3226 1776 141 3 25 chr11 80240881 80241164 -70542389 + AluJo SINE Alu 14 290 -22 21 71 0 0 chr11 80241628 80241670 -70541883 + AT_rich Low_complexity Low_complexity 1 42 0 209 303 8 59 chr11 80241755 80241874 -70541679 - L2 LINE L2 -218 3054 2942 1593 164 39 18 chr11 80242512 80242682 -70540871 - AluJo SINE Alu -20 292 112 208 70 47 0 chr11 80242682 80242725 -70540828 + (TA)n Simple_repeat Simple_repeat 2 46 0 1593 164 39 18 chr11 80242725 80242840 -70540713 - AluJo SINE Alu -200 112 1 751 256 74 0 chr11 80242841 80243194 -70540359 - L1M4 LINE L1 -2389 3757 3337 263 244 252 24 chr11 80243209 80243332 -70540221 + Charlie8 DNA MER1_type 311 461 -1956 845 200 15 23 chr11 80243332 80243590 -70539963 + MER65C LTR ERV1 1 301 -160 3410 129 8 13 chr11 80243594 80244121 -70539432 - L1PA13 LINE L1 0 6163 5640 243 282 14 0 chr11 80244157 80244228 -70539325 + L1M4 LINE L1 3479 3550 -2596 2683 132 36 3 chr11 80244232 80244968 -70538585 - L1P4 LINE L1 -516 5645 4886 942 160 13 0 chr11 80244971 80245127 -70538426 + MER65C LTR ERV1 304 461 0 * 3331 278 72 57 chr11 80245127 80245865 -70537688 + Charlie8 DNA MER1_type 461 1187 -1230 342 0 0 0 chr11 80245865 80245903 -70537650 + (CA)n Simple_repeat Simple_repeat 1 38 0 3331 278 72 57 chr11 80245903 80245928 -70537625 + Charlie8 DNA MER1_type 1187 1210 -1207 2220 92 7 0 chr11 80245928 80246253 -70537300 + AluSx SINE Alu 2 328 0 3331 278 72 57 chr11 80246253 80246290 -70537263 + Charlie8 DNA MER1_type 1210 1245 -1172 1713 175 3 7 chr11 80246290 80246576 -70536977 + AluJo SINE Alu 1 285 -27 3331 278 72 57 chr11 80246576 80247391 -70536162 + Charlie8 DNA MER1_type 1245 2103 -314 333 198 28 0 chr11 80247530 80247636 -70535917 + (TA)n Simple_repeat Simple_repeat 1 109 0 254 308 0 0 chr11 80247688 80247753 -70535800 + Charlie8 DNA MER1_type 2312 2376 -41 2186 229 83 130 chr11 80248084 80248523 -70535030 - HAL1 LINE L1 -10 2497 2039 781 183 0 0 chr11 80248523 80248643 -70534910 - FLAM_A SINE Alu -11 131 12 2186 229 83 130 chr11 80248643 80249313 -70534240 - HAL1 LINE L1 -468 2039 1327 2126 105 3 50 chr11 80249354 80249677 -70533876 + AluSx SINE Alu 5 312 0 878 204 79 48 chr11 80249707 80250060 -70533493 - L1MC5 LINE L1 -54 7907 7544 2260 112 0 10 chr11 80250072 80250384 -70533169 - AluSg SINE Alu -1 309 1 245 241 19 0 chr11 80250391 80250445 -70533108 - HAL1 LINE L1 -1162 1345 1291 1952 134 0 31 chr11 80250466 80250786 -70532767 - AluSx SINE Alu 0 312 2 769 252 119 26 chr11 80250832 80251252 -70532301 + L1MEc LINE L1 782 1240 -5156 2782 246 59 43 chr11 80251266 80252107 -70531446 + L1MB7 LINE L1 3191 4017 -2129 1402 184 84 8 chr11 80252107 80252368 -70531185 + AluJo SINE Alu 2 282 -30 392 0 21 0 chr11 80252371 80252419 -70531134 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2782 246 59 43 chr11 80252419 80252624 -70530929 + L1MB7 LINE L1 4018 4258 -1888 2088 185 47 116 chr11 80252629 80253482 -70530071 + L1MB7 LINE L1 4409 5202 -944 541 117 52 0 chr11 80253501 80253578 -70529975 + LTR23 LTR ERV1 320 400 -37 264 59 0 0 chr11 80253617 80253651 -70529902 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 816 199 26 41 chr11 80253652 80253749 -70529804 + L1MB7 LINE L1 5254 5351 -811 983 235 56 5 chr11 80253749 80253962 -70529591 - MER58A DNA MER1_type 0 224 1 816 199 26 41 chr11 80253962 80254114 -70529439 + L1MB7 LINE L1 5351 5507 -655 3274 158 68 15 chr11 80254470 80255019 -70528534 + L1MB7 LINE L1 5551 6134 -50 1872 159 7 13 chr11 80255019 80255154 -70528399 + AluJb SINE Alu 1 135 -177 2126 107 3 10 chr11 80255154 80255472 -70528081 + AluSc SINE Alu 1 309 0 1872 159 7 13 chr11 80255472 80255644 -70527909 + AluJb SINE Alu 135 306 -6 3274 158 68 15 chr11 80255644 80255678 -70527875 + L1MB7 LINE L1 6134 6165 -19 743 227 0 0 chr11 80255690 80255822 -70527731 + FLAM_A SINE Alu 2 133 0 1876 159 0 3 chr11 80255848 80256138 -70527415 + AluSx SINE Alu 1 289 -23 317 270 66 67 chr11 80256353 80256633 -70526920 - L1ME LINE L1 -364 5757 5477 21 0 0 0 chr11 80256748 80256769 -70526784 + AT_rich Low_complexity Low_complexity 1 21 0 5915 142 23 18 chr11 80257111 80257601 -70525952 + L1MA6 LINE L1 4901 5387 -913 2367 97 3 0 chr11 80257601 80257912 -70525641 + AluSq SINE Alu 1 312 -1 5915 142 23 18 chr11 80257912 80258167 -70525386 + L1MA6 LINE L1 5387 5639 -661 6920 97 48 55 chr11 80258167 80259405 -70524148 + Tigger3b DNA MER2_type 2 1231 0 5915 142 23 18 chr11 80259405 80260049 -70523504 + L1MA6 LINE L1 5639 6300 0 22 0 0 0 chr11 80260535 80260557 -70522996 + AT_rich Low_complexity Low_complexity 1 22 0 1889 158 14 0 chr11 80260973 80261265 -70522288 - AluJo SINE Alu -6 306 11 247 198 117 27 chr11 80261380 80261491 -70522062 + L1MC4a LINE L1 5813 5933 -1875 2553 97 21 16 chr11 80262561 80262934 -70520619 + THE1C LTR MaLR 1 375 0 288 288 115 36 chr11 80263590 80263729 -70519824 + MIR SINE MIR 2 151 -111 1527 209 7 3 chr11 80263949 80264252 -70519301 + AluJo SINE Alu 1 304 0 1618 133 12 128 chr11 80264815 80265152 -70518401 - AluJb SINE Alu -4 298 1 2453 68 0 23 chr11 80265188 80265495 -70518058 + AluY SINE Alu 1 300 -11 391 331 101 0 chr11 80265589 80265737 -70517816 - MIR3 SINE MIR -6 202 40 451 335 25 15 chr11 80265957 80266157 -70517396 - MIR SINE MIR -22 240 39 269 225 50 12 chr11 80266216 80266296 -70517257 - MIR SINE MIR -106 156 74 211 167 150 33 chr11 80266602 80266662 -70516891 + L2 LINE L2 3247 3313 0 673 262 116 18 chr11 80267125 80267350 -70516203 + MIR SINE MIR 3 249 -13 242 271 200 0 chr11 80269432 80269517 -70514036 - L2 LINE L2 -1 3271 3170 2180 131 0 6 chr11 80272681 80272993 -70510560 - AluSx SINE Alu 0 312 3 207 354 37 0 chr11 80273241 80273323 -70510230 - MIR3 SINE MIR -14 194 110 263 274 126 42 chr11 80273347 80273442 -70510111 - MIR SINE MIR -68 140 38 356 325 184 5 chr11 80273865 80274071 -70509482 - MIR SINE MIR 0 262 20 2376 72 7 0 chr11 80274374 80274667 -70508886 + AluSp SINE Alu 1 295 -18 905 246 0 0 chr11 80274700 80274875 -70508678 - FAM SINE Alu 0 175 1 354 267 79 61 chr11 80274919 80275074 -70508479 - MIR SINE MIR -64 144 19 449 270 148 15 chr11 80275098 80275304 -70508249 + MIR SINE MIR 32 260 -2 260 220 68 0 chr11 80275500 80275559 -70507994 - MIR SINE MIR -71 137 75 680 157 97 8 chr11 80275600 80275777 -70507776 - L1MB7 LINE L1 0 6178 5985 2269 101 0 14 chr11 80275875 80276172 -70507381 - AluSx SINE Alu -7 305 13 313 347 51 46 chr11 80276177 80276332 -70507221 - L1 LINE L1 -1140 5006 4853 1741 161 45 3 chr11 80276332 80276618 -70506935 + AluJb SINE Alu 1 298 -14 313 347 51 46 chr11 80276618 80276981 -70506572 - L1 LINE L1 -1293 4853 4487 1276 215 120 60 chr11 80277214 80277680 -70505873 - MLT1L LTR MaLR -103 512 19 199 259 86 0 chr11 80278333 80278391 -70505162 + MIR SINE MIR 60 122 -86 1180 171 10 15 chr11 80278450 80278655 -70504898 + AluJb SINE Alu 85 288 -24 237 298 60 36 chr11 80279416 80279500 -70504053 + L2 LINE L2 3109 3194 -78 2822 13 0 13 chr11 80280185 80280502 -70503051 - AluYb8 SINE Alu -5 313 1 213 234 65 13 chr11 80280720 80280797 -70502756 - MER5C DNA MER1_type -12 312 232 1522 191 66 6 chr11 80280912 80281231 -70502322 - MER58B DNA MER1_type 0 341 4 229 250 250 8 chr11 80281288 80281420 -70502133 + MIR SINE MIR 40 203 -59 344 223 161 23 chr11 80281464 80281520 -70502033 + HsTC2 DNA Tc2 1 48 -1850 1962 120 0 4 chr11 80281520 80281786 -70501767 - AluSx SINE Alu -19 293 29 344 223 161 23 chr11 80281786 80281859 -70501694 + HsTC2 DNA Tc2 48 148 -1750 812 239 179 72 chr11 80281866 80282029 -70501524 + HsTC2 DNA Tc2 1279 1423 -475 948 118 0 15 chr11 80282029 80282164 -70501389 + FLAM_C SINE Alu 1 133 0 1917 160 0 0 chr11 80282173 80282473 -70501080 + AluJo SINE Alu 6 305 -7 812 239 179 72 chr11 80282473 80282730 -70500823 + HsTC2 DNA Tc2 1430 1755 -143 224 196 374 0 chr11 80282929 80283036 -70500517 + L2 LINE L2 3167 3313 0 208 211 53 18 chr11 80283260 80283317 -70500236 + MIR SINE MIR 160 218 -44 207 244 77 141 chr11 80283888 80284044 -70499509 + L2 LINE L2 3123 3268 -4 2617 65 0 0 chr11 80284143 80284449 -70499104 - AluSg SINE Alu -2 308 3 528 259 67 11 chr11 80285595 80285741 -70497812 + MIR SINE MIR 39 187 -62 404 275 131 13 chr11 80285763 80285999 -70497554 + HAL1 LINE L1 51 314 -2193 3291 217 31 8 chr11 80286005 80286801 -70496752 - L1M4 LINE L1 -1097 5049 4235 1026 228 62 62 chr11 80286897 80287221 -70496332 + MLT1D LTR MaLR 1 324 -181 304 256 2 13 chr11 80287221 80287309 -70496244 - L1MC4 LINE L1 -1249 6778 6636 2275 93 7 3 chr11 80287336 80287638 -70495915 - AluSg1 SINE Alu -6 303 1 455 334 24 76 chr11 80287670 80287999 -70495554 - L1MC4a LINE L1 -1216 6592 6281 833 179 0 0 chr11 80288261 80288395 -70495158 + AluSq/x SINE Alu 1 134 -178 1771 186 3 0 chr11 80288447 80288742 -70494811 - AluJb SINE Alu -16 296 1 718 244 25 15 chr11 80288775 80288972 -70494581 - L1MC4a LINE L1 -1940 5868 5670 247 212 45 0 chr11 80289053 80289119 -70494434 - L1MEd LINE L1 -4869 1250 1182 430 146 122 0 chr11 80289119 80289201 -70494352 + Tigger4(Zombi) DNA MER2_type 1 92 -2639 * 4820 110 13 27 chr11 80289195 80289352 -70494201 + Tigger4(Zombi) DNA MER2_type 1970 2128 -603 2313 169 34 7 chr11 80289352 80289767 -70493786 + MSTB LTR MaLR 1 426 0 8533 175 24 34 chr11 80289767 80290242 -70493311 + MSTB-int LTR MaLR 1 479 -1172 1468 193 8 15 chr11 80290242 80290506 -70493047 + AluJo SINE Alu 34 295 -17 8533 175 24 34 chr11 80290506 80291697 -70491856 + MSTB-int LTR MaLR 479 1651 0 2203 138 97 8 chr11 80291697 80292088 -70491465 + MSTB LTR MaLR 1 426 0 4820 110 13 27 chr11 80292088 80292701 -70490852 + Tigger4(Zombi) DNA MER2_type 2125 2731 0 286 280 71 67 chr11 80292707 80292946 -70490607 - L1MEd LINE L1 -4942 1177 938 425 294 94 91 chr11 80293051 80293681 -70489872 - L1MEd LINE L1 -5393 726 95 26 88 0 0 chr11 80293717 80293785 -70489768 + AT_rich Low_complexity Low_complexity 1 68 0 899 268 106 25 chr11 80293875 80294233 -70489320 + HAL1 LINE L1 1588 1974 -533 651 273 111 99 chr11 80294267 80294835 -70488718 - L1ME3A LINE L1 -29 6141 5567 377 286 67 17 chr11 80294849 80295027 -70488526 - L1ME3A LINE L1 -662 5508 5322 388 252 77 21 chr11 80295035 80295178 -70488375 + HAL1 LINE L1 1984 2134 -373 415 318 79 0 chr11 80295218 80295344 -70488209 - MIR SINE MIR -124 138 3 1318 218 84 25 chr11 80295387 80295690 -70487863 - L1ME3A LINE L1 -969 5177 4843 3349 116 71 2 chr11 80295690 80296208 -70487345 - MER41C LTR ERV1 0 554 1 1318 218 84 25 chr11 80296208 80296307 -70487246 - L1ME3A LINE L1 -1303 4843 4751 21 36 0 0 chr11 80296369 80296397 -70487156 + AT_rich Low_complexity Low_complexity 1 28 0 287 253 119 88 chr11 80296444 80296638 -70486915 - L2 LINE L2 -10 3303 3104 438 219 78 16 chr11 80296669 80296797 -70486756 - MIR SINE MIR -74 188 53 1555 169 40 10 chr11 80297608 80297909 -70485644 - AluJo SINE Alu -2 310 1 723 78 0 0 chr11 80297922 80298012 -70485541 - 5S rRNA rRNA -31 90 1 236 261 0 112 chr11 80298491 80298625 -70484928 + L2 LINE L2 3195 3313 0 924 225 0 0 chr11 80298627 80298796 -70484757 - FAM SINE Alu -6 169 1 2168 117 42 31 chr11 80298823 80299183 -70484370 - THE1B LTR MaLR 0 364 1 22 35 0 0 chr11 80299267 80299296 -70484257 + AT_rich Low_complexity Low_complexity 1 29 0 360 0 0 0 chr11 80299515 80299555 -70483998 + (TG)n Simple_repeat Simple_repeat 1 40 0 2122 107 0 4 chr11 80299555 80299836 -70483717 - AluSx SINE Alu -32 280 1 612 179 8 16 chr11 80299998 80300121 -70483432 - FLAM_A SINE Alu -1 141 20 2666 42 0 0 chr11 80300122 80300428 -70483125 - AluY SINE Alu -5 306 1 530 283 116 5 chr11 80300683 80300881 -70482672 + MIR SINE MIR 5 224 -38 531 214 107 8 chr11 80301392 80301523 -70482030 + MER5B DNA MER1_type 35 178 0 229 241 0 52 chr11 80301524 80301582 -70481971 + L2 LINE L2 3214 3268 -4 368 279 93 44 chr11 80302122 80302348 -70481205 - L1MC4a LINE L1 -1945 5863 5627 2120 133 9 160 chr11 80303650 80304175 -70479378 - MER65C LTR ERV1 -15 446 1 867 137 86 90 chr11 80304982 80305260 -70478293 - MER33 DNA MER1_type 0 324 48 394 178 14 27 chr11 80305373 80305446 -70478107 - FLAM SINE Alu -6 127 56 514 271 36 7 chr11 80305575 80305715 -70477838 + L3 LINE CR1 1111 1254 -323 1773 173 3 0 chr11 80305734 80306017 -70477536 - AluJo SINE Alu -25 287 4 350 248 188 23 chr11 80306031 80306164 -70477389 - MIR SINE MIR -3 259 105 241 276 0 17 chr11 80307106 80307164 -70476389 - L2 LINE L2 -9 3263 3207 2276 101 0 0 chr11 80307185 80307482 -70476071 + AluSc SINE Alu 1 297 -12 473 290 15 30 chr11 80307504 80307635 -70475918 - L2 LINE L2 -2 3270 3142 252 303 90 0 chr11 80307759 80307848 -70475705 + MIR SINE MIR 149 245 -17 1846 172 13 0 chr11 80308253 80308556 -70474997 - AluJo SINE Alu -5 307 1 239 302 47 23 chr11 80308763 80308849 -70474704 - L2 LINE L2 -608 2706 2619 271 276 82 0 chr11 80308972 80309070 -70474483 + L1MC/D LINE L1 3629 3734 -2412 911 179 0 7 chr11 80309071 80309216 -70474337 + FRAM SINE Alu 4 147 -29 581 287 194 37 chr11 80309257 80309587 -70473966 + L1MC/D LINE L1 3732 4009 -2137 2412 178 33 7 chr11 80309587 80310008 -70473545 + MSTB1 LTR MaLR 1 432 0 581 287 194 37 chr11 80310008 80310605 -70472948 + L1MC/D LINE L1 4009 4805 -1341 387 294 111 71 chr11 80310621 80311060 -70472493 + L1MC/D LINE L1 4974 5431 -757 24261 134 36 14 chr11 80311079 80314219 -70469334 + L1MA3 LINE L1 12 3081 -4643 1602 188 35 0 chr11 80314219 80314507 -70469046 + AluJb SINE Alu 1 298 -14 24261 134 36 14 chr11 80314507 80316414 -70467139 + L1MA3 LINE L1 3081 4944 -2780 2133 152 0 0 chr11 80316414 80316724 -70466829 + AluSx SINE Alu 1 310 -2 24261 134 36 14 chr11 80316724 80319217 -70464336 + L1MA3 LINE L1 4944 7724 0 356 264 196 14 chr11 80319502 80319650 -70463903 + MER5B DNA MER1_type 2 176 -2 761 247 36 0 chr11 80319650 80319844 -70463709 + MIR SINE MIR 33 233 -29 274 318 66 40 chr11 80320072 80320223 -70463330 + L2 LINE L2 3159 3313 0 486 287 0 8 chr11 80320648 80320770 -70462783 + MIR3 SINE MIR 47 167 -41 2120 137 0 0 chr11 80321639 80321939 -70461614 - AluSx SINE Alu -12 300 1 25 65 0 0 chr11 80321997 80322043 -70461510 + AT_rich Low_complexity Low_complexity 1 46 0 11511 26 0 4 chr11 80322094 80324149 -70459404 - L1PA2 LINE L1 -4 6151 4103 22 0 0 0 chr11 80324324 80324346 -70459207 + AT_rich Low_complexity Low_complexity 1 22 0 358 274 128 73 chr11 80324889 80325068 -70458485 + MER5A DNA MER1_type 1 189 0 22 0 0 0 chr11 80325228 80325250 -70458303 + AT_rich Low_complexity Low_complexity 1 22 0 339 230 142 9 chr11 80325381 80325494 -70458059 - MIR SINE MIR -60 202 75 1433 189 143 47 chr11 80325894 80326280 -70457273 - LTR41 LTR ERVL -6 767 345 763 196 21 7 chr11 80326345 80326488 -70457065 - LTR41 LTR ERVL -627 146 2 1000 48 88 0 chr11 80327600 80327725 -70455828 + MER85 DNA T2_type 2 137 -2 22 0 0 0 chr11 80328478 80328500 -70455053 + AT_rich Low_complexity Low_complexity 1 22 0 272 269 117 28 chr11 80328768 80328913 -70454640 - MIR SINE MIR 0 262 105 236 340 52 31 chr11 80329048 80329239 -70454314 - L2 LINE L2 -609 2705 2511 397 267 92 8 chr11 80329879 80329999 -70453554 - MIR3 SINE MIR -70 138 9 426 256 74 25 chr11 80330017 80330199 -70453354 + MIR SINE MIR 7 192 -58 1851 90 75 15 chr11 80330467 80330761 -70452792 + AluSq SINE Alu 1 310 0 3432 175 73 1 chr11 80330789 80331475 -70452078 - L1MB4 LINE L1 -10 6170 5436 596 86 0 12 chr11 80332029 80332110 -70451443 - MADE1 DNA Mariner 0 80 1 2603 189 50 55 chr11 80332278 80332913 -70450640 - LTR27 LTR ERV1 -2 634 3 265 282 82 9 chr11 80333028 80333138 -70450415 + L2 LINE L2 3155 3272 0 366 283 20 20 chr11 80333241 80333340 -70450213 + MIR SINE MIR 20 118 -90 235 320 120 0 chr11 80333842 80333967 -70449586 + MIR SINE MIR 13 152 -110 636 246 80 15 chr11 80334839 80335038 -70448515 + MIR SINE MIR 28 239 -23 617 110 12 0 chr11 80335193 80335275 -70448278 + AluJ/FLAM SINE Alu 2 84 -228 488 224 67 0 chr11 80336339 80336473 -70447080 + MIR SINE MIR 81 223 -39 185 375 54 30 chr11 80336939 80337107 -70446446 + L2 LINE L2 2921 3092 -180 1753 169 20 53 chr11 80337592 80337948 -70445605 + MER2 DNA MER2_type 1 344 0 374 133 17 0 chr11 80338757 80338817 -70444736 + MER96 DNA MER1_type? 112 172 -3 234 355 48 42 chr11 80340038 80340206 -70443347 - MIR SINE MIR -86 176 3 297 242 0 53 chr11 80340364 80340459 -70443094 - MIR SINE MIR -15 247 158 187 244 122 73 chr11 80340686 80340768 -70442785 - L2 LINE L2 -54 3218 3133 525 251 126 36 chr11 80341344 80341401 -70442152 + MER112 DNA MER1_type 9 59 -201 321 68 0 0 chr11 80341401 80341445 -70442108 + (CA)n Simple_repeat Simple_repeat 2 45 0 525 251 126 36 chr11 80341445 80341610 -70441943 + MER112 DNA MER1_type 59 251 -9 844 281 0 55 chr11 80341890 80342164 -70441389 - MIR SINE MIR 0 262 4 535 279 20 20 chr11 80342166 80342367 -70441186 - L1ME LINE L1 -369 5752 5552 868 147 0 16 chr11 80342882 80343011 -70440542 - FLAM_A SINE Alu -6 127 1 235 262 251 21 chr11 80343336 80343497 -70440056 - MIR SINE MIR -65 197 3 249 33 0 0 chr11 80343561 80343591 -70439962 + (CA)n Simple_repeat Simple_repeat 1 30 0 22 35 0 0 chr11 80345250 80345279 -70438274 + AT_rich Low_complexity Low_complexity 1 29 0 4067 190 37 21 chr11 80345373 80345642 -70437911 - L1ME1 LINE L1 -9 6157 5894 2483 72 0 25 chr11 80345642 80345960 -70437593 - AluY SINE Alu -1 310 1 4067 190 37 21 chr11 80345960 80347125 -70436428 - L1ME1 LINE L1 -272 5894 4547 2676 178 7 21 chr11 80347136 80347628 -70435925 + L1PB4 LINE L1 5633 6096 -70 1635 136 70 31 chr11 80347628 80347915 -70435638 + AluJo SINE Alu 1 298 -14 2676 178 7 21 chr11 80347915 80347981 -70435572 + L1PB4 LINE L1 6096 6161 -5 203 122 0 24 chr11 80348594 80348635 -70434918 + (GGAA)n Simple_repeat Simple_repeat 2 41 0 324 265 29 59 chr11 80348853 80348989 -70434564 + MIR SINE MIR 81 212 -50 263 325 99 79 chr11 80349282 80349624 -70433929 - L2 LINE L2 -1 3271 2923 225 352 19 0 chr11 80349782 80349890 -70433663 - L2 LINE L2 -1393 1921 1812 215 278 0 19 chr11 80351021 80351075 -70432478 + L2 LINE L2 3216 3268 -4 411 296 43 9 chr11 80351109 80351224 -70432329 + L2 LINE L2 3153 3271 -1 335 321 71 9 chr11 80351220 80351332 -70432221 - L3 LINE CR1 -119 1458 1340 * 276 143 36 0 chr11 80351346 80351402 -70432151 - L1MA4 LINE L1 -11 6289 6232 29 0 0 45 chr11 80351491 80351515 -70432038 + AT_rich Low_complexity Low_complexity 1 24 -18 1856 137 10 31 chr11 80351515 80351807 -70431746 - AluJo SINE Alu -26 286 1 29 0 0 45 chr11 80351807 80351826 -70431727 + AT_rich Low_complexity Low_complexity 24 42 0 431 250 55 73 chr11 80351864 80352028 -70431525 + L2 LINE L2 3153 3313 0 8164 17 5 0 chr11 80352242 80353245 -70430308 + L1PA3 LINE L1 5155 6165 0 24 0 0 0 chr11 80353256 80353280 -70430273 + AT_rich Low_complexity Low_complexity 1 24 0 409 241 121 0 chr11 80353595 80353711 -70429842 - L2 LINE L2 -12 3301 3172 420 260 162 70 chr11 80354805 80355411 -70428142 + L2 LINE L2 2650 3311 -2 720 264 17 6 chr11 80355654 80355828 -70427725 + MLT1I LTR MaLR 97 272 -137 243 122 0 85 chr11 80355849 80355931 -70427622 + (TTTAA)n Simple_repeat Simple_repeat 3 77 0 698 140 268 11 chr11 80356388 80356567 -70426986 - MER44D DNA MER2_type -114 495 1 367 280 11 0 chr11 80356575 80356668 -70426885 + MIR SINE MIR 58 151 -57 227 302 0 0 chr11 80356786 80356803 -70426750 - L1MA10 LINE L1 -1 6333 6317 833 208 19 42 chr11 80356803 80357019 -70426534 - L1ME2 LINE L1 -10 6154 5944 219 114 0 0 chr11 80358066 80358101 -70425452 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 229 238 0 0 chr11 80358103 80358145 -70425408 - L2 LINE L2 -15 3298 3257 1959 148 3 7 chr11 80359094 80359391 -70424162 + AluSx SINE Alu 16 311 -1 2319 104 0 0 chr11 80360011 80360320 -70423233 + AluSx SINE Alu 1 309 -3 26 30 0 0 chr11 80360544 80360577 -70422976 + AT_rich Low_complexity Low_complexity 1 33 0 40700 33 3 0 chr11 80360796 80366352 -70417201 - L1PA4 LINE L1 -3 6467 893 624 63 0 0 chr11 80366319 80366417 -70417136 - L1PA4 LINE L1 -6081 380 10 * 630 266 35 4 chr11 80366935 80367164 -70416389 - L1ME2 LINE L1 -180 5941 5706 868 220 104 29 chr11 80367441 80367682 -70415871 - MIR SINE MIR 0 262 4 35 54 0 0 chr11 80367701 80367757 -70415796 + AT_rich Low_complexity Low_complexity 1 56 0 222 327 65 19 chr11 80367911 80368018 -70415535 - L2 LINE L2 -213 3059 2948 273 57 0 0 chr11 80368264 80368299 -70415254 + (T)n Simple_repeat Simple_repeat 1 35 0 486 287 0 8 chr11 80369888 80370010 -70413543 + MIR3 SINE MIR 47 167 -41 2120 137 0 0 chr11 80370879 80371179 -70412374 - AluSx SINE Alu -12 300 1 25 65 0 0 chr11 80371237 80371283 -70412270 + AT_rich Low_complexity Low_complexity 1 46 0 11523 25 0 4 chr11 80371335 80373390 -70410163 - L1PA2 LINE L1 -4 6151 4103 22 0 0 0 chr11 80373565 80373587 -70409966 + AT_rich Low_complexity Low_complexity 1 22 0 358 274 128 73 chr11 80374130 80374309 -70409244 + MER5A DNA MER1_type 1 189 0 22 0 0 0 chr11 80374469 80374491 -70409062 + AT_rich Low_complexity Low_complexity 1 22 0 339 230 142 9 chr11 80374622 80374735 -70408818 - MIR SINE MIR -60 202 75 1433 189 143 47 chr11 80375137 80375523 -70408030 - LTR41 LTR ERVL -6 767 345 763 196 21 7 chr11 80375588 80375731 -70407822 - LTR41 LTR ERVL -627 146 2 1000 48 88 0 chr11 80376842 80376967 -70406586 + MER85 DNA T2_type 2 137 -2 22 0 0 0 chr11 80377720 80377742 -70405811 + AT_rich Low_complexity Low_complexity 1 22 0 413 272 94 19 chr11 80378011 80378222 -70405331 - MIR SINE MIR 0 262 33 388 185 42 17 chr11 80378917 80379036 -70404517 - L1ME4a LINE L1 -236 5885 5764 513 221 147 7 chr11 80379043 80379179 -70404374 - MLT1F LTR MaLR -370 172 18 1449 156 3 138 chr11 80379417 80379793 -70403760 - AluJb SINE Alu 0 332 1 258 288 50 0 chr11 80380048 80380128 -70403425 + MIR3 SINE MIR 124 207 -1 217 287 170 11 chr11 80380303 80380397 -70403156 - L2 LINE L2 -6 3266 3158 1659 135 0 96 chr11 80381066 80381399 -70402154 - AluJb SINE Alu -11 301 1 207 328 82 30 chr11 80381418 80381552 -70402001 - L2 LINE L2 -4 3309 3169 1993 156 0 29 chr11 80381923 80382230 -70401323 + AluJo SINE Alu 1 298 -14 2830 271 117 20 chr11 80382286 80383498 -70400055 - L2 LINE L2 -619 2695 1366 340 292 106 53 chr11 80383660 80384089 -70399464 + L2 LINE L2 2760 3308 -5 24 0 0 0 chr11 80384468 80384492 -70399061 + AT_rich Low_complexity Low_complexity 1 24 0 251 242 30 0 chr11 80384519 80384585 -70398968 + CT-rich Low_complexity Low_complexity 3 70 0 297 220 0 0 chr11 80384933 80384992 -70398561 - MIR SINE MIR -18 244 186 2089 230 55 55 chr11 80385002 80385670 -70397883 - L1MC5 LINE L1 -42 7919 7249 2421 87 0 0 chr11 80385670 80385969 -70397584 - AluY SINE Alu -12 299 1 2089 230 55 55 chr11 80385969 80386034 -70397519 - L1MC5 LINE L1 -711 7250 7186 554 291 114 6 chr11 80386034 80386192 -70397361 - MIR SINE MIR -62 200 26 308 274 258 28 chr11 80387106 80387271 -70396282 + MIR SINE MIR 4 208 -54 2517 59 0 13 chr11 80387969 80388275 -70395278 - AluY SINE Alu -9 302 1 756 126 44 59 chr11 80388358 80388493 -70395060 - FLAM_A SINE Alu 0 133 1 288 260 45 13 chr11 80389092 80389221 -70394332 - MIR SINE MIR -61 147 58 376 270 230 0 chr11 80389248 80389400 -70394153 - MIR SINE MIR -28 234 48 4134 172 30 12 chr11 80389516 80390874 -70392679 - L1MB8 LINE L1 -152 6026 4643 328 270 57 100 chr11 80390883 80390994 -70392559 - MIR SINE MIR -30 232 135 2550 69 0 3 chr11 80390994 80391298 -70392255 + AluSc SINE Alu 1 303 -6 328 270 57 100 chr11 80391298 80391416 -70392137 - MIR SINE MIR -127 135 13 379 267 121 26 chr11 80392037 80392153 -70391400 - MIR SINE MIR -63 145 19 4402 172 95 23 chr11 80392184 80393683 -70389870 - L1MB2 LINE L1 0 6171 4547 321 254 112 96 chr11 80394180 80394377 -70389176 + MIR SINE MIR 57 256 -6 1678 169 65 60 chr11 80394621 80394989 -70388564 - MLT1A2 LTR MaLR -4 370 1 344 313 47 71 chr11 80395590 80395801 -70387752 + MIR SINE MIR 1 206 -56 1970 145 7 3 chr11 80395878 80396182 -70387371 - AluSx SINE Alu -7 305 1 349 328 71 16 chr11 80396269 80396452 -70387101 + MIR SINE MIR 1 193 -69 397 250 167 22 chr11 80396643 80396823 -70386730 + L2 LINE L2 2133 2338 -976 232 271 106 24 chr11 80397127 80397212 -70386341 - L2 LINE L2 -8 3264 3173 376 297 110 13 chr11 80397265 80397420 -70386133 + MIR SINE MIR 22 191 -71 389 273 27 91 chr11 80397662 80397882 -70385671 + MIR SINE MIR 37 242 -20 305 288 45 38 chr11 80398001 80398133 -70385420 - L2 LINE L2 -2 3311 3179 319 261 50 48 chr11 80398270 80398456 -70385097 + MIR3 SINE MIR 3 187 -73 207 338 138 0 chr11 80398514 80398594 -70384959 - MIR3 SINE MIR -7 201 111 242 172 52 35 chr11 80398735 80398793 -70384760 + MIR SINE MIR 204 262 0 258 338 0 0 chr11 80398809 80398886 -70384667 + L2 LINE L2 2780 2856 -458 263 354 12 0 chr11 80399017 80399099 -70384454 + L2 LINE L2 3104 3186 -86 180 0 0 0 chr11 80400499 80400519 -70383034 + (T)n Simple_repeat Simple_repeat 1 20 0 1350 118 11 114 chr11 80400521 80400792 -70382761 - AluSx SINE Alu -69 243 1 1150 176 10 10 chr11 80400953 80401157 -70382396 - MER20 DNA MER1_type 0 219 16 217 254 45 15 chr11 80403279 80403346 -70380207 + MIR SINE MIR 31 99 -163 422 303 100 49 chr11 80403404 80403813 -70379740 + L2 LINE L2 2236 2665 -649 607 294 62 5 chr11 80403834 80404045 -70379508 + MIR SINE MIR 27 249 -13 350 220 260 0 chr11 80404099 80404199 -70379354 + MER5A DNA MER1_type 20 145 -44 388 199 252 8 chr11 80404433 80404564 -70378989 - MIR SINE MIR -47 215 53 288 277 151 13 chr11 80404742 80404901 -70378652 - MIR SINE MIR -44 218 31 271 303 187 51 chr11 80405314 80405523 -70378030 - L2 LINE L2 0 3272 3093 2134 125 10 0 chr11 80405523 80405820 -70377733 - AluSx SINE Alu -12 300 1 271 303 187 51 chr11 80405820 80406000 -70377553 - L2 LINE L2 -179 3093 2830 397 267 92 8 chr11 80406924 80407044 -70376509 - MIR3 SINE MIR -70 138 9 426 252 74 25 chr11 80407062 80407244 -70376309 + MIR SINE MIR 7 192 -58 1851 90 75 15 chr11 80407512 80407806 -70375747 + AluSq SINE Alu 1 310 0 3449 174 73 1 chr11 80407834 80408520 -70375033 - L1MB4 LINE L1 -10 6170 5436 596 86 0 12 chr11 80409074 80409155 -70374398 - MADE1 DNA Mariner 0 80 1 2603 189 50 55 chr11 80409323 80409958 -70373595 - LTR27 LTR ERV1 -2 634 3 231 282 82 9 chr11 80410073 80410183 -70373370 + L2 LINE L2 3155 3272 0 332 283 20 20 chr11 80410286 80410385 -70373168 + MIR SINE MIR 20 118 -90 193 300 111 0 chr11 80410922 80411012 -70372541 + MIR SINE MIR 53 152 -110 573 246 80 15 chr11 80411884 80412083 -70371470 + MIR SINE MIR 28 239 -23 580 110 12 0 chr11 80412238 80412320 -70371233 + AluJ/FLAM SINE Alu 2 84 -228 446 224 67 0 chr11 80413384 80413518 -70370035 + MIR SINE MIR 81 223 -39 1637 171 20 53 chr11 80414637 80414993 -70368560 + MER2 DNA MER2_type 1 344 0 378 133 17 0 chr11 80415802 80415862 -70367691 + MER96 DNA MER1_type? 112 172 -3 190 380 102 0 chr11 80417083 80417220 -70366333 - MIR SINE MIR -86 176 26 270 242 0 53 chr11 80417409 80417504 -70366049 - MIR SINE MIR -15 247 158 491 256 126 36 chr11 80418389 80418446 -70365107 + MER112 DNA MER1_type 9 59 -201 321 68 0 0 chr11 80418446 80418490 -70365063 + (CA)n Simple_repeat Simple_repeat 2 45 0 491 256 126 36 chr11 80418490 80418655 -70364898 + MER112 DNA MER1_type 59 251 -9 729 281 0 55 chr11 80418935 80419209 -70364344 - MIR SINE MIR 0 262 4 518 279 20 20 chr11 80419211 80419412 -70364141 - L1ME LINE L1 -369 5752 5552 836 145 0 15 chr11 80419925 80420056 -70363497 - FLAM_A SINE Alu -4 129 1 191 256 271 23 chr11 80420381 80420514 -70363039 - MIR SINE MIR -65 197 32 249 33 0 0 chr11 80420606 80420636 -70362917 + (CA)n Simple_repeat Simple_repeat 1 30 0 22 35 0 0 chr11 80422295 80422324 -70361229 + AT_rich Low_complexity Low_complexity 1 29 0 4037 188 37 21 chr11 80422418 80422686 -70360867 - L1ME1 LINE L1 -9 6157 5895 2537 69 0 25 chr11 80422686 80423005 -70360548 - AluY SINE Alu 0 311 1 4037 188 37 21 chr11 80423005 80424170 -70359383 - L1ME1 LINE L1 -271 5895 4547 2615 180 9 21 chr11 80424181 80424672 -70358881 + L1PB4 LINE L1 5633 6096 -70 1648 136 70 31 chr11 80424672 80424959 -70358594 + AluJo SINE Alu 1 298 -14 2615 180 9 21 chr11 80424959 80425025 -70358528 + L1PB4 LINE L1 6096 6161 -5 203 122 0 24 chr11 80425638 80425679 -70357874 + (GGAA)n Simple_repeat Simple_repeat 2 41 0 290 265 29 59 chr11 80425897 80426033 -70357520 + MIR SINE MIR 81 212 -50 193 403 82 13 chr11 80426509 80426668 -70356885 - L2 LINE L2 -180 3092 2923 198 352 19 0 chr11 80426826 80426934 -70356619 - L2 LINE L2 -1393 1921 1812 198 278 0 19 chr11 80428065 80428119 -70355434 + L2 LINE L2 3216 3268 -4 375 296 43 9 chr11 80428153 80428268 -70355285 + L2 LINE L2 3153 3271 -1 303 321 71 9 chr11 80428264 80428376 -70355177 - L3 LINE CR1 -119 1458 1340 * 270 143 36 0 chr11 80428390 80428446 -70355107 - L1MA4 LINE L1 -11 6289 6232 29 0 0 45 chr11 80428535 80428559 -70354994 + AT_rich Low_complexity Low_complexity 1 24 -18 1871 137 10 31 chr11 80428559 80428851 -70354702 - AluJo SINE Alu -26 286 1 29 0 0 45 chr11 80428851 80428870 -70354683 + AT_rich Low_complexity Low_complexity 24 42 0 389 279 73 7 chr11 80428936 80429072 -70354481 + L2 LINE L2 3169 3313 0 7811 17 5 0 chr11 80429286 80430292 -70353261 + L1PA3 LINE L1 5155 6168 0 24 0 0 0 chr11 80430303 80430327 -70353226 + AT_rich Low_complexity Low_complexity 1 24 0 370 241 121 0 chr11 80430642 80430758 -70352795 - L2 LINE L2 -12 3301 3172 288 262 165 73 chr11 80431852 80432458 -70351095 + L2 LINE L2 2650 3311 -2 725 287 11 0 chr11 80432701 80432875 -70350678 + MLT1I LTR MaLR 97 272 -137 243 122 0 85 chr11 80432896 80432978 -70350575 + (TTTAA)n Simple_repeat Simple_repeat 3 77 0 681 140 268 11 chr11 80433435 80433614 -70349939 - MER44D DNA MER2_type -114 495 1 337 280 11 0 chr11 80433622 80433715 -70349838 + MIR SINE MIR 58 151 -57 808 208 19 42 chr11 80433850 80434066 -70349487 - L1ME2 LINE L1 -10 6154 5944 219 114 0 0 chr11 80435113 80435148 -70348405 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 217 238 0 0 chr11 80435150 80435192 -70348361 - L2 LINE L2 -15 3298 3257 1970 148 3 7 chr11 80436141 80436438 -70347115 + AluSx SINE Alu 16 311 -1 2345 103 0 0 chr11 80437058 80437368 -70346185 + AluSx SINE Alu 1 310 -2 26 30 0 0 chr11 80437589 80437622 -70345931 + AT_rich Low_complexity Low_complexity 1 33 0 40561 33 3 0 chr11 80437841 80443397 -70340156 - L1PA4 LINE L1 -3 6467 893 630 63 0 0 chr11 80443364 80443462 -70340091 - L1PA4 LINE L1 -6081 380 10 * 612 266 35 4 chr11 80443980 80444209 -70339344 - L1ME2 LINE L1 -180 5941 5706 812 232 100 25 chr11 80444486 80444727 -70338826 - MIR SINE MIR 0 262 4 35 54 0 0 chr11 80444746 80444802 -70338751 + AT_rich Low_complexity Low_complexity 1 56 0 192 327 65 19 chr11 80444956 80445063 -70338490 - L2 LINE L2 -213 3059 2948 2192 93 6 66 chr11 80445314 80445647 -70337906 - AluSp SINE Alu 0 313 1 214 310 135 92 chr11 80446870 80447263 -70336290 - L2 LINE L2 0 3272 2863 213 39 0 0 chr11 80447372 80447398 -70336155 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1189 326 52 47 chr11 80447953 80448737 -70334816 + L1MEd LINE L1 4 791 -5328 1533 152 64 57 chr11 80448742 80449038 -70334515 + AluJb SINE Alu 1 298 -14 325 176 27 14 chr11 80449058 80449132 -70334421 + L1MC5 LINE L1 7775 7849 -112 * 1444 218 10 7 chr11 80449130 80449437 -70334116 + L1ME2 LINE L1 5610 5917 -247 23 33 0 0 chr11 80449524 80449554 -70333999 + AT_rich Low_complexity Low_complexity 1 30 0 335 175 63 0 chr11 80450425 80450488 -70333065 - MER94 DNA DNA -35 99 33 387 325 62 6 chr11 80450518 80450678 -70332875 + MIR SINE MIR 20 188 -74 214 254 48 0 chr11 80451103 80451166 -70332387 + L2 LINE L2 3242 3307 -6 291 157 0 0 chr11 80451278 80451329 -70332224 + T-rich Low_complexity Low_complexity 5 55 0 1671 204 0 22 chr11 80451333 80451646 -70331907 - AluJo SINE Alu -4 308 3 1819 131 81 3 chr11 80451683 80451966 -70331587 - AluJo SINE Alu -7 305 1 2107 108 7 14 chr11 80451979 80452276 -70331277 - AluSx SINE Alu -17 295 1 2391 111 0 20 chr11 80453211 80453553 -70330000 - MER1B DNA MER1_type -1 336 2 208 250 0 0 chr11 80453632 80453680 -70329873 - L2 LINE L2 -221 3051 3004 447 251 150 53 chr11 80453704 80453931 -70329622 - MIR SINE MIR -13 249 1 184 265 82 0 chr11 80454053 80454102 -70329451 - L2 LINE L2 -33 3239 3187 235 286 63 90 chr11 80454206 80454395 -70329158 - L2 LINE L2 -48 3224 3041 303 235 0 59 chr11 80455553 80455638 -70327915 + MIR3 SINE MIR 120 199 -9 1722 154 21 14 chr11 80456624 80456741 -70326812 + AluJo SINE Alu 1 116 -196 192 97 0 0 chr11 80456741 80456772 -70326781 + (CAAAC)n Simple_repeat Simple_repeat 4 34 0 1722 154 21 14 chr11 80456772 80456939 -70326614 + AluJo SINE Alu 116 287 -25 207 0 0 0 chr11 80457152 80457175 -70326378 + (TAAAA)n Simple_repeat Simple_repeat 1 23 0 669 228 123 18 chr11 80457190 80457418 -70326135 - MIR SINE MIR -10 252 1 439 204 56 0 chr11 80458985 80459093 -70324460 + L2 LINE L2 3200 3313 0 313 183 0 87 chr11 80460056 80460171 -70323382 + (CCCCG)n Simple_repeat Simple_repeat 3 107 0 229 278 111 0 chr11 80460542 80460614 -70322939 - L2 LINE L2 -211 3061 2982 28 0 0 0 chr11 80460705 80460733 -70322820 + AT_rich Low_complexity Low_complexity 1 28 0 341 292 131 73 chr11 80460787 80461244 -70322309 - L2 LINE L2 -1 3271 2733 316 316 0 0 chr11 80461280 80461359 -70322194 - MIR SINE MIR -1 261 183 422 268 0 111 chr11 80461359 80461512 -70322041 - MIR SINE MIR -41 221 86 735 238 90 0 chr11 80461534 80461723 -70321830 + MER63A DNA MER1_type 5 210 0 729 318 94 2 chr11 80461731 80462137 -70321416 + LTR16A LTR ERVL 8 450 0 342 243 27 0 chr11 80462150 80462224 -70321329 - MIR SINE MIR -175 87 12 390 194 0 0 chr11 80462225 80462297 -70321256 + MER69 DNA AcHobo 1 72 -2454 2488 169 50 40 chr11 80462346 80462844 -70320709 + MLT1D LTR MaLR 1 503 -2 285 282 43 34 chr11 80462864 80462981 -70320572 - MLT1-int LTR MaLR -497 874 757 2052 123 14 0 chr11 80463065 80463357 -70320196 - AluJb SINE Alu -16 296 1 1701 218 63 26 chr11 80463430 80463925 -70319628 - L1MC4 LINE L1 -234 7808 7296 1224 219 50 57 chr11 80463982 80464383 -70319170 - L1MC4 LINE L1 -943 7099 6702 683 161 32 45 chr11 80464435 80464590 -70318963 - L1MB7 LINE L1 -19 6165 6013 942 108 0 0 chr11 80464590 80464719 -70318834 + AluSg/x SINE Alu 181 309 -3 469 131 202 10 chr11 80464719 80464818 -70318735 - L1MB7 LINE L1 -150 6034 5917 3325 217 40 10 chr11 80464829 80465731 -70317822 - L1M4 LINE L1 -1744 4402 3474 636 176 37 0 chr11 80465726 80465862 -70317691 - L1MDa LINE L1 -4540 2000 1860 * 243 218 0 0 chr11 80465886 80465941 -70317612 + CT-rich Low_complexity Low_complexity 3 57 0 1610 178 61 14 chr11 80465949 80466242 -70317311 - AluJo SINE Alu -5 307 1 1076 245 73 55 chr11 80466262 80466793 -70316760 - L1MDa LINE L1 -5086 1457 917 191 299 9 47 chr11 80467638 80467745 -70315808 + L2 LINE L2 2826 2928 -344 1736 170 22 0 chr11 80467904 80468208 -70315345 + AluJb SINE Alu 1 310 0 1158 169 189 0 chr11 80468338 80468581 -70314972 + AluJo SINE Alu 1 289 -13 243 0 0 0 chr11 80468589 80468616 -70314937 + (T)n Simple_repeat Simple_repeat 1 27 0 694 186 0 35 chr11 80468823 80468968 -70314585 - FLAM_C SINE Alu -3 140 1 221 328 82 30 chr11 80468987 80469121 -70314432 - L2 LINE L2 -4 3309 3169 2916 273 125 19 chr11 80469475 80469492 -70314061 - L2 LINE L2 -527 2787 2773 2021 156 0 29 chr11 80469492 80469799 -70313754 + AluJo SINE Alu 1 298 -14 2916 273 125 19 chr11 80469799 80471067 -70312486 - L2 LINE L2 -541 2773 1366 350 295 103 50 chr11 80471229 80471658 -70311895 + L2 LINE L2 2760 3308 -5 24 0 0 0 chr11 80472035 80472059 -70311494 + AT_rich Low_complexity Low_complexity 1 24 0 251 242 30 0 chr11 80472086 80472152 -70311401 + CT-rich Low_complexity Low_complexity 3 70 0 307 222 0 42 chr11 80472500 80472572 -70310981 - MIR SINE MIR -18 244 176 1763 231 55 52 chr11 80472577 80473237 -70310316 - L1MC5 LINE L1 -48 7913 7249 2409 87 0 0 chr11 80473237 80473535 -70310018 - AluY SINE Alu -13 298 1 1763 231 55 52 chr11 80473535 80473600 -70309953 - L1MC5 LINE L1 -712 7249 7186 560 298 114 6 chr11 80473600 80473758 -70309795 - MIR SINE MIR -62 200 26 314 274 258 28 chr11 80474672 80474837 -70308716 + MIR SINE MIR 4 208 -54 2505 56 0 13 chr11 80475534 80475839 -70307714 - AluY SINE Alu -10 301 1 704 126 44 59 chr11 80475921 80476056 -70307497 - FLAM_A SINE Alu 0 133 1 287 260 45 13 chr11 80476655 80476784 -70306769 - MIR SINE MIR -61 147 58 387 270 230 0 chr11 80476811 80476963 -70306590 - MIR SINE MIR -28 234 48 3905 167 30 12 chr11 80477079 80478437 -70305116 - L1MB8 LINE L1 -152 6026 4643 2533 69 0 3 chr11 80478557 80478860 -70304693 + AluSc SINE Alu 1 302 -7 354 322 43 66 chr11 80478937 80479148 -70304405 - MIR SINE MIR -56 206 1 1517 166 65 60 chr11 80479751 80480119 -70303434 + MLT1A2 LTR MaLR 1 370 -4 340 254 112 96 chr11 80480363 80480560 -70302993 - MIR SINE MIR -6 256 57 4010 170 94 23 chr11 80481057 80482587 -70300966 + L1MB2 LINE L1 4547 6202 0 353 265 120 34 chr11 80482587 80482704 -70300849 + MIR SINE MIR 19 145 -63 22 0 0 0 chr11 80482983 80483005 -70300548 + AT_rich Low_complexity Low_complexity 1 22 0 254 242 40 97 chr11 80483325 80483449 -70300104 + MIR SINE MIR 13 129 -133 24 32 0 0 chr11 80483449 80483480 -70300073 + AT_rich Low_complexity Low_complexity 1 31 0 2315 118 0 0 chr11 80483649 80483954 -70299599 - AluSx SINE Alu -6 306 2 448 168 7 4 chr11 80483961 80484057 -70299496 + MER66A LTR ERV1 397 468 -10 209 244 23 81 chr11 80485090 80485176 -70298377 - MIR SINE MIR -41 221 141 668 299 104 32 chr11 80485258 80485633 -70297920 - L2 LINE L2 -18 3254 2853 317 354 61 6 chr11 80485654 80485835 -70297718 - L2 LINE L2 -653 2661 2471 409 263 263 9 chr11 80485919 80486136 -70297417 - Charlie7 DNA MER1_type -2335 277 6 273 271 209 8 chr11 80486180 80486309 -70297244 + MIR SINE MIR 28 182 -80 1413 130 41 8 chr11 80486436 80486682 -70296871 - L1MB2 LINE L1 -2 6169 5916 3143 154 21 30 chr11 80486931 80487555 -70295998 - L1MB8 LINE L1 -9 6169 5552 600 250 67 67 chr11 80487802 80488130 -70295423 - MARNA DNA Mariner -127 459 132 2367 92 0 0 chr11 80489945 80490238 -70293315 + AluSg SINE Alu 1 293 -17 901 194 19 0 chr11 80490297 80490457 -70293096 + FRAM SINE Alu 1 163 -13 23 33 0 0 chr11 80490609 80490639 -70292914 + AT_rich Low_complexity Low_complexity 1 30 0 396 244 60 127 chr11 80491832 80492131 -70291422 + L3b LINE CR1 1108 1386 -197 21 0 0 0 chr11 80492181 80492202 -70291351 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 80493621 80493649 -70289904 + AT_rich Low_complexity Low_complexity 1 28 0 2383 87 3 0 chr11 80493803 80494101 -70289452 + AluSp SINE Alu 1 299 -14 189 329 71 0 chr11 80494244 80494314 -70289239 + L2 LINE L2 3163 3237 -35 343 253 38 0 chr11 80495651 80495730 -70287823 + L2 LINE L2 3231 3312 -1 345 24 0 0 chr11 80496098 80496140 -70287413 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 309 212 129 0 chr11 80496264 80496349 -70287204 + MER96 DNA MER1_type? 37 132 -43 230 136 0 0 chr11 80496355 80496399 -70287154 - L1MB8 LINE L1 -11 6167 6124 32 0 0 0 chr11 80496399 80496431 -70287122 + AT_rich Low_complexity Low_complexity 1 32 0 352 83 0 0 chr11 80496431 80496479 -70287074 - MER66B LTR ERV1 -140 346 299 1997 184 50 15 chr11 80496485 80496946 -70286607 - L1MB8 LINE L1 -40 6138 5662 1020 110 0 0 chr11 80496947 80497083 -70286470 + AluSq/x SINE Alu 1 136 -176 1922 119 52 14 chr11 80497084 80497370 -70286183 + AluSx SINE Alu 3 299 -13 1961 170 30 3 chr11 80497370 80497810 -70285743 - L1MB8 LINE L1 -518 5666 5222 * 3966 217 41 5 chr11 80497809 80498882 -70284671 - L1MB8 LINE L1 -1927 4219 3108 381 250 0 0 chr11 80498948 80499024 -70284529 - MER58A DNA MER1_type -30 77 2 398 178 108 157 chr11 80499034 80499219 -70284334 - MER5B DNA MER1_type -1 177 2 757 232 76 5 chr11 80499257 80499455 -70284098 - MLT1C LTR MaLR -50 417 206 482 201 90 35 chr11 80499465 80499609 -70283944 - MER21B LTR ERV1 -410 453 302 360 0 0 0 chr11 80499839 80499879 -70283674 + (TG)n Simple_repeat Simple_repeat 1 40 0 436 341 67 51 chr11 80500082 80500457 -70283096 - L1MEd LINE L1 -5727 392 12 330 294 61 43 chr11 80500475 80500706 -70282847 - L1ME LINE L1 -298 5823 5589 366 324 66 74 chr11 80500921 80501165 -70282388 - L2 LINE L2 -14 3258 3017 1222 219 34 19 chr11 80501167 80501546 -70282007 - L1ME LINE L1 -1403 4743 4359 1637 241 87 22 chr11 80501872 80502160 -70281393 + L1M4 LINE L1 4700 4968 -1178 1659 125 28 59 chr11 80502160 80502504 -70281049 + AluJo SINE Alu 3 337 0 1637 241 87 22 chr11 80502504 80502792 -70280761 + L1M4 LINE L1 4968 5314 -832 360 89 0 20 chr11 80502864 80502932 -70280621 + L1MB3 LINE L1 6083 6146 -28 253 279 158 71 chr11 80502946 80503269 -70280284 - MLT1K LTR MaLR -61 527 177 347 266 37 9 chr11 80503485 80503594 -70279959 - L2 LINE L2 0 3313 3202 2149 97 3 10 chr11 80503837 80504148 -70279405 - AluSg1 SINE Alu 0 309 1 587 260 69 29 chr11 80504786 80505063 -70278490 - MLT1J LTR MaLR 0 511 224 297 253 91 43 chr11 80505148 80505322 -70278231 - MLT1J LTR MaLR -331 180 2 246 345 26 0 chr11 80505488 80505601 -70277952 - LTR16B LTR ERVL -348 116 1 211 343 49 10 chr11 80505601 80505703 -70277850 + L2 LINE L2 2017 2122 -1192 2140 116 0 10 chr11 80505744 80506047 -70277506 - AluSx SINE Alu -12 300 1 291 268 198 8 chr11 80506121 80506305 -70277248 - MIR SINE MIR -14 248 20 467 216 34 132 chr11 80506439 80506643 -70276910 + MER5A DNA MER1_type 1 184 -5 236 250 0 0 chr11 80506648 80506700 -70276853 + MIR3 SINE MIR 154 205 -3 308 314 69 0 chr11 80506791 80506908 -70276645 + MIR SINE MIR 40 163 -91 261 247 127 57 chr11 80507368 80507526 -70276027 - L2 LINE L2 0 3272 3104 314 311 148 16 chr11 80507618 80507862 -70275691 - L2 LINE L2 -454 2860 2585 1657 255 116 4 chr11 80508134 80508617 -70274936 + MLT1H LTR MaLR 13 549 0 1761 124 96 3 chr11 80509240 80509522 -70274031 - AluSx SINE Alu -3 309 2 1912 241 63 19 chr11 80509803 80510326 -70273227 + MLT1H LTR MaLR 1 546 -3 309 276 118 7 chr11 80510386 80510538 -70273015 + L1MC5 LINE L1 7782 7950 -11 869 241 55 47 chr11 80510554 80510628 -70272925 + L2 LINE L2 2118 2190 -1124 2511 60 0 3 chr11 80510628 80510928 -70272625 - AluY SINE Alu -12 299 1 869 241 55 47 chr11 80510928 80511106 -70272447 + L2 LINE L2 2190 2372 -942 1377 179 77 35 chr11 80511108 80511421 -70272132 + MLT1F LTR MaLR 1 326 -216 237 324 93 61 chr11 80511683 80511930 -70271623 - L2 LINE L2 -39 3233 2979 319 317 191 10 chr11 80512232 80512431 -70271122 + L3 LINE CR1 1334 1568 -9 2443 87 7 0 chr11 80513288 80513588 -70269965 - AluSg SINE Alu -8 302 1 247 331 33 50 chr11 80513623 80513744 -70269809 - MIR SINE MIR -139 123 5 2186 102 3 16 chr11 80515506 80515809 -70267744 + AluSp SINE Alu 11 309 -4 1800 194 24 13 chr11 80515978 80516360 -70267193 - MER41B LTR ERV1 -87 548 163 319 228 207 7 chr11 80516483 80516628 -70266925 + MER21B LTR ERV1 329 502 -361 234 0 0 0 chr11 80518035 80518061 -70265492 + (T)n Simple_repeat Simple_repeat 1 26 0 477 63 0 158 chr11 80518888 80518983 -70264570 - MADE1 DNA Mariner 0 80 1 182 294 82 0 chr11 80519306 80519391 -70264162 + MIR SINE MIR 84 175 -87 220 327 0 0 chr11 80519703 80519758 -70263795 - L2 LINE L2 -17 3296 3242 305 319 21 0 chr11 80520002 80520096 -70263457 - MER5A DNA MER1_type -35 154 59 299 366 0 10 chr11 80520118 80520219 -70263334 + MER5A DNA MER1_type 10 109 -80 238 114 0 0 chr11 80520581 80520616 -70262937 - MER53 DNA DNA -152 37 3 2791 138 122 27 chr11 80520662 80521010 -70262543 - MER7C DNA MER2_type -2426 602 182 182 37 37 0 chr11 80521010 80521037 -70262516 + (TGAG)n Simple_repeat Simple_repeat 1 28 0 2791 138 122 27 chr11 80521037 80521238 -70262315 - MER7C DNA MER2_type -2846 182 1 224 207 35 0 chr11 80521355 80521413 -70262140 + (TA)n Simple_repeat Simple_repeat 1 60 0 2022 116 7 4 chr11 80521513 80521790 -70261763 + AluSq SINE Alu 13 290 -23 210 114 45 0 chr11 80521791 80521835 -70261718 + (TA)n Simple_repeat Simple_repeat 2 47 0 2150 133 0 0 chr11 80521938 80522224 -70261329 - AluSx SINE Alu -26 286 1 354 228 31 74 chr11 80522329 80522491 -70261062 - MLT1L LTR MaLR -7 608 454 186 43 0 0 chr11 80522937 80522960 -70260593 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2081 96 0 21 chr11 80522989 80523271 -70260282 - AluSx SINE Alu -36 276 1 1945 166 3 0 chr11 80523524 80523831 -70259722 + AluJo SINE Alu 1 308 -4 27 81 0 0 chr11 80524984 80525046 -70258507 + AT_rich Low_complexity Low_complexity 1 62 0 851 194 7 0 chr11 80526088 80526232 -70257321 - FRAM SINE Alu -31 145 1 443 217 51 58 chr11 80526442 80526580 -70256973 + L2 LINE L2 3176 3312 -1 503 301 51 33 chr11 80526704 80527050 -70256503 - L1MC/D LINE L1 -743 5403 5074 2359 107 0 3 chr11 80527050 80527358 -70256195 + AluSg1 SINE Alu 2 308 -1 503 301 51 33 chr11 80527358 80527441 -70256112 - L1MC/D LINE L1 -1072 5074 4994 1684 222 67 7 chr11 80527612 80528056 -70255497 - L1MD2 LINE L1 -215 6144 5673 1008 297 38 8 chr11 80528461 80528936 -70254617 - L1ME LINE L1 -424 5746 5258 800 284 50 11 chr11 80529014 80529292 -70254261 - L1MC/D LINE L1 -2030 5778 5490 2439 179 16 43 chr11 80529659 80530172 -70253381 + MLT1D LTR MaLR 7 505 0 2205 105 0 7 chr11 80530280 80530574 -70252979 - AluSg SINE Alu -18 292 1 232 319 30 6 chr11 80530575 80530741 -70252812 - L1ME3A LINE L1 -222 5948 5779 320 293 30 12 chr11 80530912 80531076 -70252477 + L1M4 LINE L1 13 179 -6363 1543 167 4 7 chr11 80531088 80531364 -70252189 - AluSx SINE Alu -13 299 25 1170 146 0 0 chr11 80531393 80531571 -70251982 + AluSq SINE Alu 136 313 0 1583 234 14 98 chr11 80531571 80532003 -70251550 + L1M4 LINE L1 658 1023 -5519 1887 172 0 0 chr11 80532003 80532312 -70251241 - AluSx SINE Alu 0 309 1 1583 234 14 98 chr11 80532312 80532511 -70251042 + L1M4 LINE L1 1023 1237 -5305 1661 66 0 0 chr11 80532513 80532710 -70250843 + AluSc SINE Alu 1 197 -112 381 115 0 0 chr11 80532711 80532772 -70250781 + AluSc SINE Alu 239 299 0 621 249 42 5 chr11 80532779 80532992 -70250561 + L1M4 LINE L1 1231 1451 -5195 259 281 0 12 chr11 80533007 80533089 -70250464 - L1ME3A LINE L1 -2044 5764 5684 352 250 150 10 chr11 80533121 80533221 -70250332 - MER5B DNA MER1_type 0 178 65 1014 166 0 12 chr11 80533223 80533386 -70250167 - AluJo SINE Alu -17 295 135 1122 260 42 21 chr11 80533434 80534007 -70249546 - L1ME3A LINE L1 -509 5653 5061 530 159 148 7 chr11 80534254 80534473 -70249080 + MLT1H LTR MaLR 274 549 0 231 271 68 41 chr11 80534608 80534688 -70248865 - L1ME3A LINE L1 -1191 4955 4879 1726 162 10 17 chr11 80534688 80534985 -70248568 - AluSx SINE Alu -17 295 1 231 271 68 41 chr11 80534985 80535125 -70248428 - L1ME3A LINE L1 -1267 4879 4729 1381 191 137 0 chr11 80535255 80535554 -70247999 + MER58B DNA MER1_type 2 341 0 755 40 0 10 chr11 80536089 80536189 -70247364 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 2210 97 10 0 chr11 80536189 80536477 -70247076 - AluY SINE Alu -20 291 1 621 196 0 0 chr11 80536519 80536631 -70246922 - MER58A DNA MER1_type 0 113 2 355 335 54 0 chr11 80536848 80537072 -70246481 - L1ME3A LINE L1 -1806 4340 4105 48 0 0 0 chr11 80537201 80537249 -70246304 + AT_rich Low_complexity Low_complexity 1 48 0 30 0 0 0 chr11 80537370 80537400 -70246153 + AT_rich Low_complexity Low_complexity 1 30 0 233 103 0 141 chr11 80537807 80537885 -70245668 + (T)n Simple_repeat Simple_repeat 1 67 0 911 137 0 0 chr11 80538112 80538243 -70245310 - AluJo SINE Alu -181 131 1 23 0 0 0 chr11 80538623 80538646 -70244907 + AT_rich Low_complexity Low_complexity 1 23 0 708 211 34 17 chr11 80538650 80539055 -70244498 + L1MC5 LINE L1 7459 7913 -48 29 0 0 0 chr11 80539168 80539197 -70244356 + AT_rich Low_complexity Low_complexity 1 29 0 2174 136 0 0 chr11 80539198 80539492 -70244061 - AluSx SINE Alu -18 294 1 354 228 31 74 chr11 80539597 80539759 -70243794 - MLT1L LTR MaLR -7 608 454 186 43 0 0 chr11 80540205 80540228 -70243325 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2081 96 0 21 chr11 80540257 80540539 -70243014 - AluSx SINE Alu -36 276 1 1931 169 3 0 chr11 80540792 80541099 -70242454 + AluJo SINE Alu 1 308 -4 27 81 0 0 chr11 80542252 80542314 -70241239 + AT_rich Low_complexity Low_complexity 1 62 0 2096 103 4 4 chr11 80543356 80543637 -70239916 - AluSx SINE Alu -31 281 1 314 369 0 0 chr11 80543689 80543857 -70239696 + (CCA)n Simple_repeat Simple_repeat 1 168 0 384 262 104 36 chr11 80544622 80544913 -70238640 - MLT1J LTR MaLR 0 511 229 4762 74 8 10 chr11 80545024 80545649 -70237904 + SVA Other Other 759 1382 -4 505 273 31 12 chr11 80545931 80546092 -70237461 - L1MEd LINE L1 -5659 460 297 455 301 27 6 chr11 80546147 80546330 -70237223 - L1MEd LINE L1 -5914 205 19 230 271 47 47 chr11 80546389 80546474 -70237079 + L3 LINE CR1 1486 1570 -7 1983 120 0 29 chr11 80546990 80547306 -70236247 - AluSx SINE Alu -2 310 4 368 264 92 50 chr11 80547550 80547811 -70235742 + LTR16A1 LTR ERVL 80 351 -106 * 672 233 90 63 chr11 80547807 80548130 -70235423 + LTR16A1 LTR ERVL 82 418 -39 1983 144 7 0 chr11 80548130 80548422 -70235131 + AluJo SINE Alu 1 294 -18 672 233 90 63 chr11 80548422 80548463 -70235090 + LTR16A1 LTR ERVL 418 456 -1 389 222 9 83 chr11 80548640 80548748 -70234805 + MIR SINE MIR 156 255 -7 * 392 211 9 46 chr11 80548742 80548851 -70234702 + L2 LINE L2 3207 3311 -2 214 193 70 0 chr11 80549022 80549079 -70234474 + (CAGAGA)n Simple_repeat Simple_repeat 5 65 0 234 125 0 0 chr11 80549079 80549127 -70234426 + (TA)n Simple_repeat Simple_repeat 2 49 0 2083 107 3 10 chr11 80549128 80549417 -70234136 - AluSq SINE Alu -26 287 1 1207 71 11 38 chr11 80551266 80551450 -70232103 - AluSq SINE Alu -88 225 47 1814 154 34 0 chr11 80551509 80551624 -70231929 + AluSx SINE Alu 8 118 -194 225 0 0 0 chr11 80551624 80551649 -70231904 + (TA)n Simple_repeat Simple_repeat 2 26 0 1814 154 34 0 chr11 80551649 80551826 -70231727 + AluSx SINE Alu 118 310 -2 599 252 7 7 chr11 80551934 80552081 -70231472 + MER69 DNA AcHobo 2 148 -2378 332 130 145 14 chr11 80552075 80552144 -70231409 + MER69 DNA AcHobo 2449 2526 0 * 2557 113 6 3 chr11 80553168 80553531 -70230022 + THE1B LTR MaLR 1 364 0 409 289 33 25 chr11 80553561 80553682 -70229871 + L2 LINE L2 3179 3300 -13 473 301 33 20 chr11 80553744 80553897 -70229656 - MIR3 SINE MIR -9 199 45 2136 113 3 7 chr11 80554018 80554319 -70229234 + AluSx SINE Alu 1 300 -12 22 56 0 0 chr11 80554711 80554747 -70228806 + AT_rich Low_complexity Low_complexity 1 36 0 237 128 0 0 chr11 80554853 80554900 -70228653 + (A)n Simple_repeat Simple_repeat 1 47 0 683 238 183 27 chr11 80554904 80555232 -70228321 - MLT1J2 LTR MaLR -31 419 41 265 173 227 13 chr11 80555250 80555325 -70228228 - MIR SINE MIR -67 141 51 286 350 17 34 chr11 80555418 80555535 -70228018 - MIR3 SINE MIR -79 129 15 21 100 0 0 chr11 80555749 80555819 -70227734 + AT_rich Low_complexity Low_complexity 1 70 0 2128 123 0 7 chr11 80556512 80556805 -70226748 - AluSq SINE Alu -22 291 1 2121 179 49 2 chr11 80557006 80557413 -70226140 + MSTB LTR MaLR 1 426 0 22 35 0 0 chr11 80557460 80557489 -70226064 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr11 80558072 80558101 -70225452 + AT_rich Low_complexity Low_complexity 1 29 0 2407 103 0 6 chr11 80558115 80558427 -70225126 - AluSx SINE Alu -2 310 1 2509 40 7 0 chr11 80559015 80559312 -70224241 + AluY SINE Alu 1 299 -12 229 178 0 0 chr11 80559811 80559856 -70223697 + L1MC4 LINE L1 6659 6703 -1339 422 146 15 39 chr11 80559861 80559991 -70223562 + (TA)n Simple_repeat Simple_repeat 1 127 0 248 309 81 32 chr11 80560116 80560239 -70223314 + MIR SINE MIR 29 157 -105 265 270 138 35 chr11 80560254 80560428 -70223125 - L1ME LINE L1 -411 5710 5519 681 165 29 0 chr11 80561417 80561520 -70222033 + FRAM SINE Alu 1 102 -74 2363 80 0 0 chr11 80562064 80562352 -70221201 + AluSc SINE Alu 1 288 -21 545 100 0 0 chr11 80563377 80563457 -70220096 + MADE1 DNA Mariner 1 80 0 238 247 141 24 chr11 80563627 80563712 -70219841 + L2 LINE L2 3200 3294 -19 29 78 0 0 chr11 80563904 80563968 -70219585 + AT_rich Low_complexity Low_complexity 1 64 0 23 33 0 0 chr11 80565269 80565299 -70218254 + AT_rich Low_complexity Low_complexity 1 30 0 570 262 86 39 chr11 80565941 80566109 -70217444 + L1M4 LINE L1 2746 2905 -3241 5179 171 17 30 chr11 80566109 80566399 -70217154 - Tigger6a DNA MER2_type -514 1083 791 2055 149 0 0 chr11 80566399 80566695 -70216858 + AluSx SINE Alu 1 296 -16 5179 171 17 30 chr11 80566695 80567501 -70216052 - Tigger6a DNA MER2_type -806 791 1 570 262 86 39 chr11 80567501 80567764 -70215789 + L1M4 LINE L1 2905 3197 -2949 349 154 39 0 chr11 80568372 80568450 -70215103 - LTR33 LTR ERVL -440 81 1 684 269 108 53 chr11 80568583 80568925 -70214628 - L2 LINE L2 -861 2453 2093 1353 276 104 46 chr11 80569128 80569963 -70213590 + L2 LINE L2 2250 3139 -174 584 154 60 51 chr11 80569966 80570071 -70213482 - FRAM SINE Alu -146 166 58 23127 38 12 1 chr11 80570071 80573708 -70209845 - L1PA5 LINE L1 0 6154 2487 584 154 60 51 chr11 80573708 80573719 -70209834 - FRAM SINE Alu -254 58 49 16263 82 7 0 chr11 80573719 80576004 -70207549 - L1PA5 LINE L1 -3826 2320 21 379 209 19 4 chr11 80576004 80576111 -70207442 - FLAM_A SINE Alu -57 75 11 318 98 0 0 chr11 80576120 80576171 -70207382 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 1325 166 46 0 chr11 80576186 80576403 -70207150 - AluJo SINE Alu 0 312 86 290 232 123 58 chr11 80576422 80576560 -70206993 + L2 LINE L2 3155 3301 -12 278 276 43 17 chr11 80576690 80576806 -70206747 - L1MC4a LINE L1 -1836 5972 5854 411 219 0 0 chr11 80576848 80576944 -70206609 + (TA)n Simple_repeat Simple_repeat 1 96 0 192 179 0 0 chr11 80576990 80577029 -70206524 + (TATG)n Simple_repeat Simple_repeat 2 40 0 607 124 0 0 chr11 80577083 80577172 -70206381 + AluJ/FRAM SINE Alu 216 304 -8 311 300 0 9 chr11 80577175 80577285 -70206268 + L1ME LINE L1 5685 5793 -328 225 257 0 29 chr11 80577309 80577379 -70206174 + (TATG)n Simple_repeat Simple_repeat 4 71 0 332 152 76 95 chr11 80577389 80577494 -70206059 + Charlie5 DNA MER1_type 2522 2624 0 2281 121 0 0 chr11 80577531 80577838 -70205715 - AluSx SINE Alu -4 308 2 556 278 148 4 chr11 80577839 80578102 -70205451 - L1MC4a LINE L1 -2171 5637 5337 5941 135 76 11 chr11 80578110 80579297 -70204256 - L1MC1 LINE L1 0 6316 5066 2238 91 0 48 chr11 80579297 80579606 -70203947 + AluSq SINE Alu 1 294 -19 5941 135 76 11 chr11 80579606 80579672 -70203881 - L1MC1 LINE L1 -1250 5066 5006 273 295 16 8 chr11 80579862 80579984 -70203569 - L1MC1 LINE L1 -1537 4592 4470 2441 49 10 13 chr11 80580866 80581173 -70202380 - AluY SINE Alu -5 306 1 314 369 0 0 chr11 80581225 80581393 -70202160 + (CCA)n Simple_repeat Simple_repeat 1 168 0 376 266 111 44 chr11 80582158 80582450 -70201103 - MLT1J LTR MaLR 0 511 229 4726 72 13 8 chr11 80582556 80583182 -70200371 + SVA Other Other 753 1381 -5 528 267 31 12 chr11 80583468 80583629 -70199924 - L1MC1 LINE L1 -5659 460 297 455 301 27 6 chr11 80583686 80583869 -70199684 - L1MC1 LINE L1 -5914 205 19 230 271 47 47 chr11 80583928 80584013 -70199540 + L3 LINE CR1 1486 1570 -7 2482 78 0 0 chr11 80584529 80584837 -70198716 - AluY SINE Alu -3 308 1 1732 161 9 12 chr11 80585236 80585571 -70197982 + L1MB8 LINE L1 5699 6032 -146 354 45 0 0 chr11 80585575 80585619 -70197934 + (TC)n Simple_repeat Simple_repeat 1 44 0 2263 122 0 0 chr11 80585619 80585923 -70197630 - AluSq SINE Alu -9 304 1 870 145 0 7 chr11 80585925 80586077 -70197476 + L1MB8 LINE L1 6028 6178 0 300 283 117 94 chr11 80586471 80586821 -70196732 + L1MC4a LINE L1 6217 6574 -1234 1099 202 23 122 chr11 80586870 80587485 -70196068 + L1MC5 LINE L1 6675 7228 -733 830 235 60 35 chr11 80587625 80588025 -70195528 + L1MC5 LINE L1 7289 7698 -263 28 48 0 0 chr11 80588170 80588212 -70195341 + AT_rich Low_complexity Low_complexity 1 42 0 598 308 224 21 chr11 80588299 80588834 -70194719 - L2 LINE L2 -1684 1630 987 196 284 15 30 chr11 80588839 80588906 -70194647 - L2 LINE L2 -665 2649 2584 32 26 0 0 chr11 80589370 80589409 -70194144 + AT_rich Low_complexity Low_complexity 1 39 0 226 245 69 29 chr11 80589859 80589961 -70193592 - L1ME4a LINE L1 -48 6073 5968 225 119 0 0 chr11 80590201 80590243 -70193310 + (T)n Simple_repeat Simple_repeat 1 42 0 547 234 141 16 chr11 80590395 80590579 -70192974 + MIR SINE MIR 56 262 0 529 204 204 0 chr11 80590640 80590841 -70192712 - LTR50 LTR ERVL -5 790 549 580 186 181 40 chr11 80590877 80591125 -70192428 - LTR50 LTR ERVL -497 298 16 1879 179 0 0 chr11 80591598 80591889 -70191664 - AluJb SINE Alu -18 294 4 774 213 12 0 chr11 80591894 80592054 -70191499 - MLT1G1 LTR MaLR -433 162 1 547 269 63 5 chr11 80592056 80592279 -70191274 + L1ME LINE L1 5540 5775 -346 3410 75 59 0 chr11 80592558 80592906 -70190647 - L1PA10 LINE L1 -12 6156 5771 231 61 0 0 chr11 80592906 80592939 -70190614 + (TA)n Simple_repeat Simple_repeat 1 33 0 3410 75 59 0 chr11 80592939 80593068 -70190485 - L1PA10 LINE L1 -397 5771 5651 359 277 49 55 chr11 80593079 80593429 -70190124 - L1M4 LINE L1 -4888 1746 1282 33 56 0 0 chr11 80593650 80593704 -70189849 + AT_rich Low_complexity Low_complexity 1 54 0 201 417 31 0 chr11 80594647 80594743 -70188810 + L3 LINE CR1 1478 1576 -1 357 283 79 57 chr11 80594997 80595174 -70188379 + L1ME4a LINE L1 5648 5828 -293 640 280 51 27 chr11 80595278 80595571 -70187982 + L1MB1 LINE L1 5296 5595 -2213 1955 149 0 7 chr11 80595579 80595875 -70187678 - AluJo SINE Alu -18 294 1 289 262 97 62 chr11 80596426 80596571 -70186982 + MIR SINE MIR 107 256 -6 253 246 16 0 chr11 80596751 80596812 -70186741 + L2 LINE L2 2995 3056 -216 30 27 0 0 chr11 80596857 80596894 -70186659 + AT_rich Low_complexity Low_complexity 1 37 0 1539 169 0 4 chr11 80597149 80597427 -70186126 + L1MB1 LINE L1 5891 6167 -1 875 151 65 0 chr11 80598214 80598353 -70185200 + FRAM SINE Alu 1 146 -30 189 0 0 0 chr11 80598356 80598377 -70185176 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 2262 82 7 7 chr11 80598553 80598847 -70184706 - AluSx SINE Alu -18 294 1 576 253 67 67 chr11 80600660 80600988 -70182565 + MARNA DNA Mariner 132 459 -127 3143 154 21 30 chr11 80601235 80601859 -70181694 + L1MB8 LINE L1 5552 6169 -9 1383 135 45 8 chr11 80602108 80602353 -70181200 + L1MB2 LINE L1 5916 6169 -2 287 264 209 8 chr11 80602480 80602609 -70180944 - MIR SINE MIR -80 182 28 317 354 61 6 chr11 80603028 80603209 -70180344 + L2 LINE L2 2471 2661 -653 668 299 104 32 chr11 80603230 80603605 -70179948 + L2 LINE L2 2853 3254 -18 209 244 23 81 chr11 80603687 80603773 -70179780 + MIR SINE MIR 141 221 -41 448 168 7 4 chr11 80604806 80604902 -70178651 - MER66B LTR ERV1 -10 525 405 2284 122 0 0 chr11 80604909 80605213 -70178340 + AluSx SINE Alu 2 305 -7 261 0 0 0 chr11 80605344 80605373 -70178180 + (T)n Simple_repeat Simple_repeat 1 29 0 2462 90 0 0 chr11 80605392 80605704 -70177849 - AluSx SINE Alu 0 312 1 344 261 46 64 chr11 80605800 80605968 -70177585 + L1ME3A LINE L1 4500 4670 -1494 2248 103 3 6 chr11 80605968 80606280 -70177273 + AluSx SINE Alu 1 311 -1 344 261 46 64 chr11 80606280 80606679 -70176874 + L1ME3A LINE L1 4670 5075 -1089 1920 158 37 0 chr11 80606679 80606977 -70176576 + AluJb SINE Alu 1 309 -3 344 261 46 64 chr11 80606977 80607212 -70176341 + L1ME3A LINE L1 5075 5285 -879 1836 167 0 16 chr11 80607212 80607517 -70176036 + AluJb SINE Alu 1 300 -12 344 261 46 64 chr11 80607517 80607675 -70175878 + L1ME3A LINE L1 5285 5444 -720 903 157 0 0 chr11 80607704 80607851 -70175702 - AluSg/x SINE Alu -3 307 161 1026 234 115 24 chr11 80607869 80608217 -70175336 + L1ME3A LINE L1 5477 5857 -313 2072 122 46 27 chr11 80608217 80608585 -70174968 + THE1C LTR MaLR 1 375 0 1026 234 115 24 chr11 80608585 80608599 -70174954 + L1ME3A LINE L1 5857 5868 -302 652 279 106 18 chr11 80609680 80609906 -70173647 - MIR SINE MIR -12 250 5 271 98 0 0 chr11 80610065 80610106 -70173447 - L1MB1 LINE L1 -48 6120 6080 1837 148 3 18 chr11 80610285 80610568 -70172985 + AluJb SINE Alu 1 279 -33 872 303 64 7 chr11 80610942 80611239 -70172314 + LTR16A LTR ERVL 130 443 -7 21 0 0 0 chr11 80612586 80612607 -70170946 + AT_rich Low_complexity Low_complexity 1 21 0 419 240 291 22 chr11 80612702 80612907 -70170646 - MIR SINE MIR 0 262 7 183 176 0 0 chr11 80613037 80613064 -70170489 - MIR3 SINE MIR 0 208 182 419 303 43 0 chr11 80613064 80613197 -70170356 + MIR SINE MIR 1 138 -70 567 193 9 9 chr11 80613273 80613387 -70170166 - MER45A DNA AcHobo -19 159 46 336 242 22 89 chr11 80613453 80613529 -70170024 - MIR3 SINE MIR -43 165 102 1915 134 7 0 chr11 80613529 80613806 -70169747 + AluSg SINE Alu 1 279 -31 336 242 22 89 chr11 80613806 80613892 -70169661 - MIR3 SINE MIR -106 102 12 299 273 108 0 chr11 80613946 80614085 -70169468 + MER103 DNA DNA 3 156 -10 216 304 25 51 chr11 80614508 80614587 -70168966 + MIR SINE MIR 36 112 -96 959 291 44 17 chr11 80615395 80615801 -70167752 - LTR16B LTR ERVL -14 450 34 186 291 110 31 chr11 80616568 80616695 -70166858 + MIR3 SINE MIR 64 200 -8 24 32 0 0 chr11 80616740 80616771 -70166782 + GC_rich Low_complexity Low_complexity 1 31 0 248 304 0 0 chr11 80617841 80617896 -70165657 + L2 LINE L2 2989 3043 -229 556 276 77 28 chr11 80617896 80618077 -70165476 + MER91B DNA MER1_type 1 190 0 335 305 64 80 chr11 80618077 80618317 -70165236 + L2 LINE L2 3035 3270 -2 374 293 88 33 chr11 80618393 80618574 -70164979 + MIR SINE MIR 47 237 -25 234 91 0 0 chr11 80619150 80619183 -70164370 + (A)n Simple_repeat Simple_repeat 1 33 0 24 67 0 0 chr11 80620552 80620597 -70162956 + AT_rich Low_complexity Low_complexity 1 45 0 364 288 30 8 chr11 80620887 80621019 -70162534 - MIR SINE MIR -57 205 71 282 303 167 26 chr11 80621067 80621331 -70162222 + MLT1H LTR MaLR 245 545 -4 1981 163 3 0 chr11 80621578 80621885 -70161668 - AluJb SINE Alu -4 308 1 986 109 0 7 chr11 80621885 80622022 -70161531 - AluJb SINE Alu -176 136 1 720 247 132 0 chr11 80622037 80622227 -70161326 + MIR SINE MIR 5 219 -43 241 398 155 12 chr11 80622579 80622740 -70160813 - L2 LINE L2 -2 3270 3087 2046 110 156 8 chr11 80622808 80623180 -70160373 + MSTA LTR MaLR 1 427 -1 191 339 32 16 chr11 80623238 80623300 -70160253 - L2 LINE L2 -229 3043 2981 311 364 46 46 chr11 80623590 80623741 -70159812 + MIR3 SINE MIR 6 156 -52 655 162 47 115 chr11 80624285 80624514 -70159039 - L1MC3 LINE L1 -402 5942 5726 321 313 194 0 chr11 80624551 80624695 -70158858 + HAL1 LINE L1 1 172 -2335 1444 120 37 0 chr11 80624788 80625029 -70158524 + L1MB2 LINE L1 5821 6070 -101 257 208 14 0 chr11 80625144 80625216 -70158337 + CT-rich Low_complexity Low_complexity 3 75 0 233 159 72 14 chr11 80625537 80625606 -70157947 - HAL1 LINE L1 -1429 1078 1006 381 162 0 0 chr11 80625761 80625829 -70157724 - L1MB3 LINE L1 -196 5987 5920 249 283 58 66 chr11 80626038 80626296 -70157257 + HAL1 LINE L1 2251 2506 -1 2335 48 3 7 chr11 80626548 80626843 -70156710 - AluY SINE Alu -17 294 1 582 297 31 26 chr11 80626923 80627118 -70156435 + MIR SINE MIR 3 198 -64 28 0 0 0 chr11 80629142 80629170 -70154383 + AT_rich Low_complexity Low_complexity 1 28 0 2090 114 3 13 chr11 80629384 80629691 -70153862 - AluSc SINE Alu -5 304 1 829 249 35 56 chr11 80630042 80630380 -70153173 - L1MC4a LINE L1 -1950 5858 5528 689 96 48 24 chr11 80630440 80630551 -70153002 - MER50 LTR ERV1 -121 613 497 1573 170 3 61 chr11 80630551 80630862 -70152691 - AluJo SINE Alu -1 311 19 689 96 48 24 chr11 80630862 80630875 -70152678 - MER50 LTR ERV1 -237 497 486 23 0 0 0 chr11 80630880 80630903 -70152650 + AT_rich Low_complexity Low_complexity 1 23 0 1427 218 33 67 chr11 80630917 80631077 -70152476 - L1MC5 LINE L1 -103 7858 7694 2072 142 0 3 chr11 80631077 80631373 -70152180 + AluJb SINE Alu 1 295 -17 1427 218 33 67 chr11 80631373 80631791 -70151762 - L1MC5 LINE L1 -267 7694 7300 1759 157 10 39 chr11 80631948 80632253 -70151300 - AluJb SINE Alu -16 296 1 1693 175 69 11 chr11 80632769 80633019 -70150534 - MER82 DNA MER2_type -262 391 114 2222 116 0 10 chr11 80633019 80633321 -70150232 + AluSx SINE Alu 1 299 -13 1693 175 69 11 chr11 80633321 80633419 -70150134 - MER82 DNA MER2_type -539 114 23 1455 147 46 8 chr11 80633526 80633764 -70149789 + AluSx SINE Alu 1 247 -65 187 302 104 10 chr11 80633797 80633893 -70149660 + L2 LINE L2 3134 3238 -34 * 346 289 154 0 chr11 80633888 80634044 -70149509 + L3 LINE CR1 1050 1229 -348 350 320 98 10 chr11 80634056 80634259 -70149294 - L2 LINE L2 0 3272 3052 581 200 121 24 chr11 80634271 80634436 -70149117 + L3 LINE CR1 1311 1491 -86 584 317 48 43 chr11 80634447 80634867 -70148686 - L1MEc LINE L1 -3997 2399 1978 1527 148 17 0 chr11 80634867 80635104 -70148449 + AluSg SINE Alu 1 241 -69 2002 164 0 0 chr11 80635207 80635519 -70148034 - AluJo SINE Alu 0 312 1 1782 152 0 51 chr11 80635606 80635922 -70147631 + AluJo SINE Alu 1 300 -12 375 250 95 9 chr11 80636564 80636680 -70146873 + MER96 DNA MER1_type? 7 132 -43 35 0 0 0 chr11 80636727 80636762 -70146791 + AT_rich Low_complexity Low_complexity 1 35 0 352 83 0 0 chr11 80636762 80636810 -70146743 - MER66B LTR ERV1 -140 346 299 2021 186 48 15 chr11 80636816 80637278 -70146275 - L1MB8 LINE L1 -40 6138 5662 1020 110 0 0 chr11 80637279 80637415 -70146138 + AluSq/x SINE Alu 1 136 -177 1922 119 52 14 chr11 80637416 80637702 -70145851 + AluSx SINE Alu 3 299 -13 1943 173 30 3 chr11 80637702 80638142 -70145411 - L1MB8 LINE L1 -518 5666 5222 * 3966 217 41 5 chr11 80638141 80639214 -70144339 - L1MB8 LINE L1 -1927 4219 3108 381 250 0 0 chr11 80639280 80639356 -70144197 - MER58A DNA MER1_type -30 77 2 398 178 108 157 chr11 80639366 80639551 -70144002 - MER5B DNA MER1_type -1 177 2 757 232 76 5 chr11 80639589 80639787 -70143766 - MLT1C LTR MaLR -50 417 206 482 201 90 35 chr11 80639797 80639941 -70143612 - MER21B LTR ERV1 -410 453 302 360 0 0 0 chr11 80640171 80640211 -70143342 + (TG)n Simple_repeat Simple_repeat 1 40 0 436 341 67 51 chr11 80640414 80640789 -70142764 - L1MEc LINE L1 -5727 478 98 330 294 61 43 chr11 80640807 80641038 -70142515 - L1ME LINE L1 -298 5823 5589 366 324 66 74 chr11 80641253 80641497 -70142056 - L2 LINE L2 -14 3258 3017 1222 219 34 19 chr11 80641499 80641878 -70141675 - L1ME LINE L1 -1403 4743 4359 1672 240 85 22 chr11 80642204 80642492 -70141061 + L1M4 LINE L1 4700 4969 -1177 1659 125 28 59 chr11 80642492 80642836 -70140717 + AluJo SINE Alu 3 337 0 1672 240 85 22 chr11 80642836 80643125 -70140428 + L1M4 LINE L1 4969 5314 -832 360 89 0 20 chr11 80643197 80643265 -70140288 + L1MB3 LINE L1 6083 6146 -28 253 279 158 71 chr11 80643279 80643602 -70139951 - MLT1K LTR MaLR -61 527 177 347 266 37 9 chr11 80643817 80643926 -70139627 - L2 LINE L2 0 3313 3202 2179 93 3 10 chr11 80644169 80644480 -70139073 - AluSg1 SINE Alu 0 309 1 587 260 69 29 chr11 80645118 80645395 -70138158 - MLT1J LTR MaLR 0 511 224 297 253 91 43 chr11 80645480 80645654 -70137899 - MLT1J LTR MaLR -331 180 2 246 345 26 0 chr11 80645820 80645933 -70137620 - LTR16B LTR ERVL -348 116 1 268 316 102 76 chr11 80645933 80646076 -70137477 + L2 LINE L2 2017 2155 -1159 2303 80 3 3 chr11 80646076 80646376 -70137177 - AluSx SINE Alu -12 300 1 268 316 102 76 chr11 80646376 80646536 -70137017 + L2 LINE L2 2155 2328 -986 39 22 0 0 chr11 80646551 80646597 -70136956 + AT_rich Low_complexity Low_complexity 1 46 0 911 137 0 0 chr11 80646620 80646751 -70136802 - FLAM_C SINE Alu -12 131 1 24 0 0 0 chr11 80646949 80646973 -70136580 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 80647131 80647154 -70136399 + AT_rich Low_complexity Low_complexity 1 23 0 708 211 34 17 chr11 80647158 80647563 -70135990 + L1MC5 LINE L1 7459 7913 -48 29 0 0 0 chr11 80647676 80647705 -70135848 + AT_rich Low_complexity Low_complexity 1 29 0 2174 136 0 0 chr11 80647706 80648000 -70135553 - AluSx SINE Alu -18 294 1 354 228 31 74 chr11 80648105 80648267 -70135286 - MLT1L LTR MaLR -7 608 454 186 43 0 0 chr11 80648713 80648736 -70134817 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2081 96 0 21 chr11 80648765 80649047 -70134506 - AluSx SINE Alu -36 276 1 1898 170 7 0 chr11 80649300 80649606 -70133947 + AluJo SINE Alu 1 308 -4 27 81 0 0 chr11 80650788 80650850 -70132703 + AT_rich Low_complexity Low_complexity 1 62 0 861 188 7 0 chr11 80651892 80652036 -70131517 - FRAM SINE Alu -31 145 1 443 217 51 58 chr11 80652246 80652384 -70131169 + L2 LINE L2 3176 3312 -1 466 300 45 32 chr11 80652508 80652847 -70130706 - L1MC/D LINE L1 -743 5403 5089 2311 111 0 3 chr11 80652854 80653160 -70130393 + AluSg1 SINE Alu 2 306 -3 1241 168 13 79 chr11 80653248 80653552 -70130001 - L1ME2 LINE L1 -11 6153 5870 963 188 0 0 chr11 80653566 80653726 -70129827 + AluJb SINE Alu 133 292 -20 21 0 0 0 chr11 80653737 80653758 -70129795 + AT_rich Low_complexity Low_complexity 1 21 0 236 73 0 0 chr11 80653758 80653799 -70129754 - L1MA3 LINE L1 0 6305 6265 344 192 10 0 chr11 80653811 80653915 -70129638 + (TA)n Simple_repeat Simple_repeat 1 105 0 21812 141 40 13 chr11 80653919 80657836 -70125717 - L1MA2 LINE L1 -16 7707 3898 1716 81 36 0 chr11 80657836 80658058 -70125495 - MER30 DNA MER1_type 0 230 1 21812 141 40 13 chr11 80658058 80658647 -70124906 - L1MA2 LINE L1 -3825 3898 3327 2477 63 0 3 chr11 80658647 80658949 -70124604 - AluY SINE Alu -10 301 1 21812 141 40 13 chr11 80658949 80661916 -70121637 - L1MA2 LINE L1 -4396 3327 22 885 186 67 98 chr11 80661921 80662421 -70121132 - Zaphod DNA AcHobo -181 3850 3284 * 1306 232 77 11 chr11 80662416 80662795 -70120758 - Zaphod DNA AcHobo -3372 659 256 423 186 9 35 chr11 80662807 80662920 -70120633 + L1ME2 LINE L1 6034 6143 -21 363 123 0 0 chr11 80662930 80662987 -70120566 - Zaphod DNA AcHobo -3779 252 196 186 152 30 0 chr11 80663325 80663358 -70120195 + MIR SINE MIR 219 252 -10 2128 80 0 14 chr11 80663404 80663690 -70119863 - AluY SINE Alu -10 301 20 467 323 60 40 chr11 80664721 80665123 -70118430 - L2 LINE L2 -358 2956 2547 787 161 31 12 chr11 80665299 80665439 -70118114 + L1MB2 LINE L1 6006 6151 -20 243 0 0 0 chr11 80665439 80665466 -70118087 + (TG)n Simple_repeat Simple_repeat 2 28 0 787 161 31 12 chr11 80665466 80665487 -70118066 + L1MB2 LINE L1 6151 6170 -1 1803 126 29 4 chr11 80665489 80665790 -70117763 + AluSx SINE Alu 1 308 0 285 296 0 12 chr11 80666841 80666922 -70116631 - MIR3 SINE MIR -22 186 107 * 441 188 128 38 chr11 80666900 80667033 -70116520 + MIR3 SINE MIR 30 174 -34 682 242 5 84 chr11 80667780 80667970 -70115583 - MIR3 SINE MIR -18 190 16 550 266 30 69 chr11 80668661 80668864 -70114689 - MIR3 SINE MIR -13 195 1 505 298 111 69 chr11 80668924 80669244 -70114309 + L2 LINE L2 2832 3176 -96 432 55 0 0 chr11 80669244 80669299 -70114254 + (TG)n Simple_repeat Simple_repeat 2 56 0 505 298 111 69 chr11 80669299 80669401 -70114152 + L2 LINE L2 3176 3272 0 276 287 147 40 chr11 80669807 80669957 -70113596 + MIR SINE MIR 51 216 -46 392 239 12 123 chr11 80670231 80670449 -70113104 + MIR3 SINE MIR 9 203 -59 389 261 80 43 chr11 80670628 80670766 -70112787 + MIR3 SINE MIR 9 151 -57 230 193 140 132 chr11 80670896 80671010 -70112543 - MIR SINE MIR -63 145 31 444 37 0 0 chr11 80672814 80672868 -70110685 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 1539 158 41 0 chr11 80672869 80673135 -70110418 - AluJb SINE Alu -31 281 5 582 286 6 30 chr11 80673145 80673313 -70110240 - MER5A DNA MER1_type -8 181 18 1804 137 8 0 chr11 80673618 80673881 -70109672 - AluSx SINE Alu -47 265 1 608 271 131 9 chr11 80673881 80674102 -70109451 - L3 LINE CR1 -80 1497 1250 1840 164 0 13 chr11 80674104 80674403 -70109150 + AluJb SINE Alu 1 295 -17 1928 116 23 30 chr11 80674406 80674707 -70108846 + AluSg SINE Alu 2 300 -10 208 385 0 0 chr11 80674842 80674925 -70108628 + MIR SINE MIR 180 262 0 351 274 38 45 chr11 80675136 80675293 -70108260 + L2 LINE L2 3010 3165 -148 576 263 112 12 chr11 80675322 80675581 -70107972 + LTR33 LTR ERVL 237 521 0 269 312 220 7 chr11 80675634 80675775 -70107778 + L2 LINE L2 3102 3272 0 186 276 35 0 chr11 80675821 80675879 -70107674 - L2 LINE L2 -219 3053 2994 304 279 266 19 chr11 80675888 80676042 -70107511 + L2 LINE L2 2244 2435 -879 282 292 153 14 chr11 80676025 80676169 -70107384 + L2 LINE L2 3086 3249 -64 * 285 282 29 10 chr11 80676641 80676744 -70106809 + MIR3 SINE MIR 89 193 -15 305 273 194 6 chr11 80676860 80677025 -70106528 + MIR SINE MIR 31 226 -36 2137 114 3 3 chr11 80677061 80677369 -70106184 + AluSx SINE Alu 1 308 -4 484 234 54 6 chr11 80677496 80677827 -70105726 - LTR33 LTR ERVL -9 512 90 410 224 179 8 chr11 80678060 80678194 -70105359 + L2 LINE L2 2896 3052 -220 228 277 29 32 chr11 80678625 80678757 -70104796 + MIR SINE MIR 84 216 -46 1152 249 172 8 chr11 80678950 80679323 -70104230 - LTR16C LTR ERVL -9 482 49 1908 148 0 25 chr11 80679332 80679650 -70103903 - AluJb SINE Alu -2 310 1 454 240 48 55 chr11 80679871 80680017 -70103536 + MLT1K LTR MaLR 2 146 -442 1018 230 69 25 chr11 80680092 80680366 -70103187 + MLT1K LTR MaLR 303 588 0 270 330 94 0 chr11 80680482 80680588 -70102965 + L2 LINE L2 3123 3238 -34 * 359 282 154 0 chr11 80680583 80680739 -70102814 + L3 LINE CR1 1050 1229 -348 376 304 97 29 chr11 80680747 80680954 -70102599 - L2 LINE L2 0 3272 3052 599 200 121 24 chr11 80680966 80681131 -70102422 + L3 LINE CR1 1311 1491 -86 242 241 91 86 chr11 80681142 80681562 -70101991 - L1MEc LINE L1 -3997 2399 1978 1514 143 4 31 chr11 80681562 80681820 -70101733 + AluSg SINE Alu 1 251 -59 1605 166 0 28 chr11 80681921 80682210 -70101343 - AluJb SINE Alu -31 281 1 647 325 21 17 chr11 80682212 80682446 -70101107 + L2 LINE L2 2618 2852 -462 1635 198 0 7 chr11 80682774 80683082 -70100471 - AluJo SINE Alu -6 306 1 205 360 72 58 chr11 80684062 80684201 -70099352 + L2 LINE L2 3004 3144 -128 220 194 0 0 chr11 80684280 80684316 -70099237 + (TGGA)n Simple_repeat Simple_repeat 1 36 0 291 322 0 22 chr11 80684442 80684532 -70099021 - L2 LINE L2 0 3272 3185 647 296 73 9 chr11 80684537 80684770 -70098783 + MIR SINE MIR 15 262 0 349 288 61 38 chr11 80685126 80685258 -70098295 - L2 LINE L2 -1 3271 3137 2402 59 10 0 chr11 80685469 80685776 -70097777 - AluY SINE Alu 0 311 2 604 223 38 19 chr11 80686401 80686558 -70096995 + MLT1J LTR MaLR 39 198 -313 402 267 137 14 chr11 80687217 80687363 -70096190 + MIR SINE MIR 1 164 -98 614 239 0 0 chr11 80687367 80687484 -70096069 + FLAM_C SINE Alu 2 118 -25 1622 111 0 17 chr11 80687585 80687820 -70095733 - AluSx SINE Alu -81 231 1 23 0 0 0 chr11 80687829 80687852 -70095701 + AT_rich Low_complexity Low_complexity 1 23 0 1558 260 119 72 chr11 80687861 80688542 -70095011 + MER21B LTR ERV1 6 718 -145 194 318 45 0 chr11 80688619 80688685 -70094868 + MIR SINE MIR 146 214 -48 1012 239 45 10 chr11 80688734 80689023 -70094530 - L1ME2 LINE L1 -335 5829 5531 2389 138 134 10 chr11 80689044 80689536 -70094017 - Tigger3(Golem) DNA MER2_type -200 2829 2277 673 181 0 0 chr11 80689530 80689635 -70093918 - Tigger3(Golem) DNA MER2_type -2924 105 1 * 5661 194 71 55 chr11 80689635 80690077 -70093476 + L1PA11 LINE L1 2251 2684 -3490 416 162 0 0 chr11 80690077 80690151 -70093402 + FLAM SINE Alu 60 133 -10 5661 194 71 55 chr11 80690151 80691943 -70091610 + L1PA11 LINE L1 2684 6021 -153 2041 85 42 14 chr11 80691943 80692226 -70091327 - AluY SINE Alu -20 291 1 5661 194 71 55 chr11 80692226 80692376 -70091177 + L1PA11 LINE L1 6021 6167 -7 7467 95 41 6 chr11 80692383 80693224 -70090329 - Tigger4(Zombi) DNA MER2_type 0 2731 1843 198 118 0 0 chr11 80693224 80693258 -70090295 + (CAT)n Simple_repeat Simple_repeat 1 34 0 7467 95 41 6 chr11 80693258 80693481 -70090072 - Tigger4(Zombi) DNA MER2_type -888 1843 1629 6656 102 22 1 chr11 80693478 80694382 -70089171 - Tigger4(Zombi) DNA MER2_type -1808 923 1 * 760 242 6 0 chr11 80694382 80694560 -70088993 + L1MD1 LINE L1 4774 4952 -1194 842 39 0 0 chr11 80694602 80694705 -70088848 - L1P LINE L1 -917 5229 5127 1319 39 0 0 chr11 80694706 80694861 -70088692 + L1PA3 LINE L1 6001 6155 0 4224 149 38 1 chr11 80694861 80695772 -70087781 + L1MD1 LINE L1 4982 5930 -312 1389 131 9 5 chr11 80695799 80696021 -70087532 + L1MD1 LINE L1 6018 6240 -2 758 235 6 99 chr11 80696069 80696393 -70087160 - L1M4 LINE L1 -2142 4004 3711 225 0 0 0 chr11 80696615 80696640 -70086913 + (A)n Simple_repeat Simple_repeat 1 25 0 896 203 61 74 chr11 80696641 80696937 -70086616 + LTR16A LTR ERVL 151 442 -8 565 230 43 62 chr11 80696952 80697161 -70086392 + L2 LINE L2 3104 3308 -5 22 0 0 0 chr11 80697733 80697755 -70085798 + GC_rich Low_complexity Low_complexity 1 22 0 2448 47 3 0 chr11 80698112 80698410 -70085143 - AluY SINE Alu -12 299 1 2608 190 61 4 chr11 80699601 80700106 -70083447 - MLT1F LTR MaLR -8 534 1 284 245 255 11 chr11 80700115 80700209 -70083344 + MIR3 SINE MIR 15 131 -77 1152 143 46 81 chr11 80700215 80700325 -70083228 - MER33 DNA MER1_type -2261 324 212 872 167 0 0 chr11 80700325 80700457 -70083096 - FLAM_C SINE Alu -1 132 1 1152 143 46 81 chr11 80700457 80700653 -70082900 - MER33 DNA MER1_type -2373 212 29 375 290 103 19 chr11 80700790 80700945 -70082608 - MIR3 SINE MIR -25 183 16 247 361 0 0 chr11 80701218 80701301 -70082252 - L3 LINE CR1 -58 1519 1437 344 281 192 20 chr11 80701434 80701580 -70081973 + MIR SINE MIR 92 262 0 321 333 11 0 chr11 80701634 80701727 -70081826 + L2 LINE L2 3143 3236 -36 372 335 40 0 chr11 80701767 80701919 -70081634 - L3 LINE CR1 -410 1167 1010 545 185 49 103 chr11 80701929 80702113 -70081440 + MER102a DNA MER1_type 10 183 -147 1622 90 0 5 chr11 80702192 80702403 -70081150 - AluSq SINE Alu -103 210 1 307 284 0 11 chr11 80702426 80702521 -70081032 + MER102a DNA MER1_type 236 329 -1 249 284 15 0 chr11 80702624 80702691 -70080862 + L2 LINE L2 3186 3253 -19 730 242 137 35 chr11 80702692 80702977 -70080576 + MLT1I LTR MaLR 1 314 -95 228 206 73 15 chr11 80703039 80703107 -70080446 - MLT1K LTR MaLR 0 588 517 195 100 0 0 chr11 80703320 80703350 -70080203 + (CTG)n Simple_repeat Simple_repeat 2 31 0 521 274 56 28 chr11 80703373 80703552 -70080001 - L2 LINE L2 -860 2454 2271 274 319 149 0 chr11 80703748 80703883 -70079670 - MIR SINE MIR -64 144 23 753 120 0 34 chr11 80704356 80704473 -70079080 - FLAM_C SINE Alu -19 114 2 770 143 291 0 chr11 80706276 80706486 -70077067 + L1MA6 LINE L1 6026 6296 -4 261 0 0 0 chr11 80706731 80706760 -70076793 + (TC)n Simple_repeat Simple_repeat 1 29 0 2196 86 0 20 chr11 80707873 80708175 -70075378 - AluSx SINE Alu -16 296 1 2520 58 0 0 chr11 80708862 80709173 -70074380 - AluY SINE Alu 0 311 1 1661 112 0 16 chr11 80709467 80709718 -70073835 + AluSx SINE Alu 61 307 -5 223 236 101 45 chr11 80709973 80710062 -70073491 - L2 LINE L2 -38 3234 3141 725 208 6 0 chr11 80710217 80710385 -70073168 + (CA)n Simple_repeat Simple_repeat 2 170 0 1879 135 0 11 chr11 80710928 80711209 -70072344 + AluSx SINE Alu 2 279 -33 603 133 0 0 chr11 80711210 80711315 -70072238 + (GGAA)n Simple_repeat Simple_repeat 3 107 0 313 329 12 0 chr11 80711332 80711417 -70072136 - L2 LINE L2 -541 2773 2688 2318 94 0 0 chr11 80711417 80711725 -70071828 + AluSc SINE Alu 1 308 -1 195 210 0 148 chr11 80712382 80712463 -70071090 - L2 LINE L2 0 3272 3204 209 262 48 24 chr11 80712704 80712788 -70070765 + L2 LINE L2 1785 1870 -1444 2033 115 3 23 chr11 80712822 80712990 -70070563 - AluSx SINE Alu -13 299 129 246 32 0 0 chr11 80712990 80713021 -70070532 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2033 100 4 0 chr11 80713021 80713302 -70070251 - AluSg SINE Alu -28 282 1 2033 115 3 23 chr11 80713302 80713437 -70070116 - AluSx SINE Alu -181 131 1 2129 103 0 13 chr11 80713805 80714107 -70069446 - AluSx SINE Alu -14 298 1 2117 117 0 0 chr11 80714350 80714641 -70068912 + AluSx SINE Alu 1 291 -21 823 212 43 55 chr11 80714724 80714979 -70068574 - L1MB8 LINE L1 -2 6176 5925 789 177 39 0 chr11 80714986 80715116 -70068437 + AluJo SINE Alu 2 136 -176 1624 167 17 14 chr11 80715130 80715405 -70068148 + AluJb SINE Alu 1 297 -15 181 0 0 0 chr11 80715405 80715425 -70068128 + (CAA)n Simple_repeat Simple_repeat 2 180 0 1624 167 17 14 chr11 80715425 80715442 -70068111 + AluJb SINE Alu 297 312 0 590 242 185 0 chr11 80715450 80715494 -70068059 - L1ME1 LINE L1 -243 5923 5888 2197 136 48 16 chr11 80715494 80715806 -70067747 + MLT1B LTR MaLR 1 329 -61 1841 119 3 31 chr11 80715806 80716126 -70067427 - AluSx SINE Alu 0 312 1 2197 136 48 16 chr11 80716126 80716187 -70067366 + MLT1B LTR MaLR 329 387 -3 590 242 185 0 chr11 80716187 80716369 -70067184 - L1ME1 LINE L1 -278 5888 5655 2175 88 3 16 chr11 80716391 80716699 -70066854 - AluSc SINE Alu -5 304 1 210 37 0 0 chr11 80716700 80716727 -70066826 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1845 115 3 24 chr11 80716727 80717014 -70066539 - AluSg SINE Alu -29 281 1 1709 180 0 0 chr11 80717042 80717331 -70066222 + AluJo SINE Alu 1 289 -23 316 331 184 50 chr11 80717350 80717746 -70065807 + L2 LINE L2 2824 3272 0 268 295 50 79 chr11 80717755 80717863 -70065690 - L2 LINE L2 0 3313 3208 2205 106 0 3 chr11 80717863 80718164 -70065389 + AluSg SINE Alu 1 300 -10 268 295 50 79 chr11 80718164 80718194 -70065359 - L2 LINE L2 -105 3208 3179 418 204 3 1 chr11 80718282 80718365 -70065188 + MIR SINE MIR 77 161 -47 284 185 46 15 chr11 80718537 80718602 -70064951 + MLT1H LTR MaLR 12 78 -471 2217 103 0 0 chr11 80718670 80718962 -70064591 - AluSg SINE Alu -18 292 1 759 271 84 55 chr11 80718979 80719289 -70064264 + MLT1H LTR MaLR 231 549 0 717 268 16 16 chr11 80719296 80719479 -70064074 + MIR SINE MIR 21 203 -59 230 262 1 130 chr11 80719510 80719666 -70063887 - MIR SINE MIR -62 146 34 1813 142 3 23 chr11 80720640 80720949 -70062604 - AluJo SINE Alu -9 303 1 1762 158 0 3 chr11 80721012 80721303 -70062250 + AluJo SINE Alu 3 292 -20 440 307 15 14 chr11 80721416 80721563 -70061990 - MIR3 SINE MIR -54 154 6 553 279 0 16 chr11 80721619 80721748 -70061805 + MIR SINE MIR 20 146 -62 926 115 0 7 chr11 80721883 80722022 -70061531 + AluJo SINE Alu 3 140 -172 1790 175 67 1 chr11 80722147 80722532 -70061021 + L1MB7 LINE L1 5657 5991 -193 180 77 0 0 chr11 80722463 80722489 -70061064 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 281 270 96 26 chr11 80722489 80722597 -70060956 + L1MB8 LINE L1 6007 6125 -53 302 85 0 41 chr11 80722597 80722657 -70060896 - MADE1 DNA Mariner -41 39 1 548 304 87 35 chr11 80722720 80723009 -70060544 - LTR67 LTR ERVL -151 406 103 737 159 45 23 chr11 80723209 80723341 -70060212 + AluJb SINE Alu 2 136 -176 884 164 13 7 chr11 80723720 80723872 -70059681 - AluJb SINE Alu -15 297 145 923 248 132 39 chr11 80724262 80724678 -70058875 + LTR67 LTR ERVL 101 555 -2 396 119 0 0 chr11 80724725 80724784 -70058769 + L1M1 LINE L1 2666 2724 -4841 2145 98 3 7 chr11 80724784 80725090 -70058463 - AluSq SINE Alu -8 305 1 1066 193 38 28 chr11 80725093 80725306 -70058247 - MLT1A2 LTR MaLR -159 215 1 384 279 105 29 chr11 80725309 80725481 -70058072 + MIR SINE MIR 75 259 -3 1208 123 0 6 chr11 80725542 80725721 -70057832 + AluJb SINE Alu 87 264 -48 283 83 0 0 chr11 80725864 80725900 -70057653 - MER81 DNA DNA -43 71 36 377 279 63 0 chr11 80725907 80726018 -70057535 - MIR SINE MIR -97 165 48 459 231 34 17 chr11 80726658 80726775 -70056778 + MIR3 SINE MIR 37 155 -53 274 302 0 0 chr11 80726911 80727007 -70056546 + (TG)n Simple_repeat Simple_repeat 2 97 0 2241 88 3 13 chr11 80727033 80727339 -70056214 + AluSp SINE Alu 1 303 -10 414 290 186 11 chr11 80727506 80727689 -70055864 + MIR SINE MIR 31 245 -17 853 226 0 7 chr11 80727689 80727844 -70055709 - MER45A DNA AcHobo 0 178 25 1551 106 93 0 chr11 80728217 80728454 -70055099 + MER41B LTR ERV1 290 548 -87 423 310 222 11 chr11 80728695 80729056 -70054497 - L2 LINE L2 -6 3266 2830 1289 243 157 12 chr11 80729304 80729711 -70053842 + L1ME3A LINE L1 5427 5892 -278 2073 99 3 7 chr11 80729711 80730014 -70053539 + AluY SINE Alu 8 309 -2 2175 88 3 16 chr11 80730014 80730322 -70053231 + AluSc SINE Alu 1 304 -5 550 244 119 0 chr11 80730344 80730520 -70053033 + L1ME1 LINE L1 5655 5851 -315 2197 136 48 16 chr11 80730526 80730587 -70052966 - MLT1B LTR MaLR -3 387 329 1842 119 3 31 chr11 80730587 80730907 -70052646 + AluSx SINE Alu 1 312 0 2197 136 48 16 chr11 80730907 80731219 -70052334 - MLT1B LTR MaLR -61 329 1 1624 167 17 14 chr11 80731271 80731583 -70051970 - AluJb SINE Alu 0 312 1 789 177 39 0 chr11 80731597 80731727 -70051826 - AluJo SINE Alu -176 136 2 823 212 43 55 chr11 80731734 80731989 -70051564 + L1MB8 LINE L1 5925 6176 -2 2117 117 0 0 chr11 80732072 80732363 -70051190 - AluSx SINE Alu -21 291 1 859 158 0 0 chr11 80732606 80732739 -70050814 + AluSq/x SINE Alu 1 133 -180 26 30 0 0 chr11 80732746 80732779 -70050774 + AT_rich Low_complexity Low_complexity 1 33 0 1128 133 81 33 chr11 80732784 80732848 -70050705 + L1ME3A LINE L1 5106 5165 -1019 1668 161 16 39 chr11 80732848 80733159 -70050394 + AluJb SINE Alu 1 304 -8 1128 133 81 33 chr11 80733159 80733465 -70050088 + L1ME3A LINE L1 5165 5484 -700 247 206 63 48 chr11 80733467 80733530 -70050023 + AluJo SINE Alu 127 190 -112 21 0 0 0 chr11 80733630 80733651 -70049902 + GC_rich Low_complexity Low_complexity 1 21 0 1264 210 38 0 chr11 80733684 80733951 -70049602 + L1ME3A LINE L1 5879 6155 -15 2202 88 20 0 chr11 80733952 80734257 -70049296 - AluSq SINE Alu -2 311 1 731 187 75 0 chr11 80735126 80735260 -70048293 + AluJb SINE Alu 137 280 -32 225 0 0 0 chr11 80735262 80735287 -70048266 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 371 317 17 8 chr11 80735403 80735523 -70048030 + L2 LINE L2 3193 3313 0 495 252 49 35 chr11 80735525 80735668 -70047885 - MIR3 SINE MIR -48 160 16 540 175 79 0 chr11 80736253 80736367 -70047186 + MER69A DNA AcHobo 1 123 -54 28 0 0 0 chr11 80736367 80736395 -70047158 + AT_rich Low_complexity Low_complexity 1 28 0 1383 229 65 3 chr11 80736410 80736716 -70046837 - MLT1E3 LTR MaLR -6 618 294 1784 168 18 70 chr11 80736718 80737106 -70046447 + MLT1A2 LTR MaLR 1 368 -6 474 206 319 58 chr11 80737125 80737212 -70046341 - MLT1E1 LTR MaLR -301 353 290 2261 72 3 34 chr11 80737212 80737533 -70046020 - AluY SINE Alu 0 311 1 474 206 319 58 chr11 80737533 80737721 -70045832 - MLT1E1 LTR MaLR -364 290 6 355 158 0 0 chr11 80737724 80737781 -70045772 + MER69A DNA AcHobo 118 174 -3 1909 125 0 23 chr11 80737981 80738286 -70045267 - AluSq SINE Alu -15 298 1 204 40 0 0 chr11 80738289 80738314 -70045239 + (T)n Simple_repeat Simple_repeat 1 25 0 1035 211 10 0 chr11 80738316 80738524 -70045029 - AluJo SINE Alu -101 211 2 608 197 27 48 chr11 80738527 80738715 -70044838 + MER39 LTR ERV1 433 616 -91 210 71 0 0 chr11 80738727 80738755 -70044798 + (TCTCC)n Simple_repeat Simple_repeat 5 32 0 2035 110 0 7 chr11 80738755 80739037 -70044516 - AluSx SINE Alu -32 280 1 363 250 11 0 chr11 80739037 80739125 -70044428 + MER39 LTR ERV1 603 691 -16 217 307 27 13 chr11 80739400 80739475 -70044078 + MIR3 SINE MIR 3 78 -130 386 256 36 23 chr11 80739503 80739693 -70043860 + L1MC4a LINE L1 5299 5488 -725 1242 191 42 113 chr11 80739708 80740207 -70043346 - MER39 LTR ERV1 0 707 118 674 290 51 112 chr11 80740246 80740434 -70043119 + L1MC4a LINE L1 5507 5705 -2103 1637 146 12 53 chr11 80740434 80740756 -70042797 + AluJb SINE Alu 1 309 -3 674 290 51 112 chr11 80740756 80740918 -70042635 + L1MC4a LINE L1 5705 5875 -1933 1078 232 100 69 chr11 80740918 80741069 -70042484 + LTR38 LTR ERV1 1 146 -410 1921 101 50 0 chr11 80741069 80741347 -70042206 + AluSg SINE Alu 1 292 -18 1078 232 100 69 chr11 80741347 80741734 -70041819 + LTR38 LTR ERV1 146 556 0 674 290 51 112 chr11 80741734 80741840 -70041713 + L1MC4a LINE L1 5875 5918 -1890 678 227 8 0 chr11 80741840 80741972 -70041581 + FLAM_A SINE Alu 1 133 0 674 290 51 112 chr11 80741972 80742138 -70041415 + L1MC4a LINE L1 5918 6093 -1715 2199 134 40 3 chr11 80742219 80742570 -70040983 - THE1B LTR MaLR 0 364 1 598 253 127 27 chr11 80742598 80742819 -70040734 + MIR SINE MIR 20 262 0 621 189 209 5 chr11 80742880 80743081 -70040472 - LTR50 LTR ERVL -5 790 549 707 186 181 40 chr11 80743117 80743365 -70040188 - LTR50 LTR ERVL -497 298 16 967 155 66 40 chr11 80743837 80744063 -70039490 - AluJo SINE Alu -18 294 63 396 277 10 10 chr11 80744097 80744198 -70039355 + MIR3 SINE MIR 101 201 -7 4073 93 13 4 chr11 80744227 80744776 -70038777 - MER41A LTR ERV1 0 554 1 185 327 37 37 chr11 80744952 80745059 -70038494 - L2 LINE L2 -10 3303 3197 1802 99 70 4 chr11 80745539 80745812 -70037741 - AluSx SINE Alu -21 291 1 1997 128 0 0 chr11 80746394 80746676 -70036877 + AluSx SINE Alu 1 282 -30 2269 84 0 0 chr11 80746677 80746975 -70036578 - AluY SINE Alu -13 298 1 743 185 83 13 chr11 80747134 80747291 -70036262 + MLT1D LTR MaLR 1 168 -337 359 237 0 0 chr11 80747312 80747388 -70036165 + MLT1D LTR MaLR 371 446 -59 1380 180 0 77 chr11 80747390 80747717 -70035836 - AluJo SINE Alu -10 302 1 2194 145 21 0 chr11 80747775 80748106 -70035447 + LTR32 LTR ERVL 12 349 -122 977 118 13 13 chr11 80748127 80748279 -70035274 + LTR32 LTR ERVL 320 471 0 375 247 48 55 chr11 80748279 80748425 -70035128 - HERV16 LTR ERVL -4260 736 592 1092 298 72 49 chr11 80748462 80748820 -70034733 - HERV16 LTR ERVL -4473 523 148 2078 121 0 10 chr11 80748820 80749125 -70034428 - AluSx SINE Alu -10 302 1 1092 298 72 49 chr11 80749125 80749276 -70034277 - HERV16 LTR ERVL -4848 148 2 868 320 31 9 chr11 80749283 80749605 -70033948 - LTR16A LTR ERVL -104 346 18 367 305 172 0 chr11 80749618 80749769 -70033784 - MIR SINE MIR -37 225 49 2053 93 0 64 chr11 80749938 80750250 -70033303 - AluSc SINE Alu -17 292 1 1944 153 35 75 chr11 80750266 80750638 -70032915 - LTR18A LTR ERVL 0 357 1 4642 165 13 0 chr11 80750703 80751419 -70032134 - HERVL18 LTR ERVL 0 6047 5323 * 6266 144 15 35 chr11 80751407 80752424 -70031129 - HERVL18 LTR ERVL -2111 3936 2941 2381 180 3 3 chr11 80752412 80752779 -70030774 - HERV16 LTR ERVL -2963 3084 2718 * 1206 155 64 2 chr11 80752776 80753036 -70030517 - HERV16 LTR ERVL -3595 2452 2119 * 2706 202 14 26 chr11 80753061 80753986 -70029567 - HERV16 LTR ERVL -4425 1622 13 1932 147 21 103 chr11 80754004 80754393 -70029160 - LTR18A LTR ERVL 0 357 1 709 267 89 9 chr11 80754462 80754693 -70028860 - LTR33 LTR ERVL -258 265 36 526 237 61 9 chr11 80754713 80754827 -70028726 + L1M4b LINE L1 1 120 -6739 908 110 0 0 chr11 80754827 80754945 -70028608 + FLAM_C SINE Alu 1 118 -15 4406 212 43 50 chr11 80754997 80756396 -70027157 + L1M4b LINE L1 104 1510 -5449 2363 130 65 23 chr11 80756396 80756828 -70026725 + LTR7 LTR ERV1 1 450 0 4406 212 43 50 chr11 80756828 80757118 -70026435 + L1M4b LINE L1 1510 1800 -5159 2213 106 0 0 chr11 80757118 80757419 -70026134 + AluSx SINE Alu 1 301 -11 4406 212 43 50 chr11 80757419 80757704 -70025849 + L1M4b LINE L1 1800 2085 -4874 1839 169 3 3 chr11 80757704 80758012 -70025541 + AluJb SINE Alu 1 308 -4 4406 212 43 50 chr11 80758012 80758295 -70025258 + L1M4b LINE L1 2085 2416 -4543 529 153 57 0 chr11 80758354 80758478 -70025075 + L1M4 LINE L1 5087 5217 -929 204 40 0 0 chr11 80758529 80758554 -70024999 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 1728 124 0 25 chr11 80759173 80759456 -70024097 + AluSx SINE Alu 1 276 -36 183 42 0 0 chr11 80759461 80759485 -70024068 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 2672 132 61 36 chr11 80759526 80760003 -70023550 + LTR2B LTR ERV1 1 489 -1 536 165 55 0 chr11 80760012 80760103 -70023450 + MER63 DNA MER1_type 34 755 -307 1961 78 0 78 chr11 80760434 80760600 -70022953 - AluSq SINE Alu -14 299 166 2233 85 0 3 chr11 80760600 80760895 -70022658 - AluSc SINE Alu -14 295 2 1961 78 0 78 chr11 80760895 80761035 -70022518 - AluSq SINE Alu -147 166 17 2486 151 37 5 chr11 80761035 80761445 -70022108 + MSTB LTR MaLR 4 426 0 200 327 18 0 chr11 80761458 80761513 -70022040 + MIR SINE MIR 200 255 -7 242 232 18 0 chr11 80761749 80761805 -70021748 + MIR SINE MIR 86 142 -120 2843 245 91 24 chr11 80761867 80762676 -70020877 + L1MEc LINE L1 338 1234 -5162 1994 144 0 3 chr11 80762676 80762981 -70020572 + AluSx SINE Alu 1 304 -8 2843 245 91 24 chr11 80762981 80763215 -70020338 + L1MEc LINE L1 1234 1451 -4945 711 228 22 0 chr11 80763216 80763352 -70020201 - MER7C DNA MER2_type 0 612 474 2024 190 68 32 chr11 80763352 80763795 -70019758 - LTR2B LTR ERV1 0 490 32 955 130 7 0 chr11 80763812 80763966 -70019587 - MER7C DNA MER2_type -133 470 316 772 174 8 23 chr11 80763980 80764112 -70019441 + FLAM_A SINE Alu 1 130 -12 1597 136 3 111 chr11 80764112 80764428 -70019125 - MER7C DNA MER2_type -288 314 33 1403 243 104 63 chr11 80764441 80764800 -70018753 + L1MEc LINE L1 1450 1846 -4550 1732 134 10 49 chr11 80764800 80765106 -70018447 + AluJo SINE Alu 1 294 -18 1403 243 104 63 chr11 80765106 80765364 -70018189 + L1MEc LINE L1 1846 2092 -4304 * 17202 25 0 0 chr11 80765357 80768542 -70015011 + L1PA3 LINE L1 2984 6167 0 1470 184 14 14 chr11 80768558 80768836 -70014717 - MER7A DNA MER2_type -69 277 2 188 244 39 90 chr11 80768992 80769070 -70014483 + MIR SINE MIR 69 142 -66 288 0 0 0 chr11 80769455 80769487 -70014066 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 347 162 15 0 chr11 80769491 80769559 -70013994 + L1MEc LINE L1 2092 2160 -4236 353 277 63 50 chr11 80769825 80769984 -70013569 - MIR3 SINE MIR -12 196 36 242 286 202 0 chr11 80770383 80770502 -70013051 + MIR SINE MIR 49 191 -71 1536 189 3 49 chr11 80770546 80770852 -70012701 - AluJo SINE Alu -20 292 1 419 261 0 9 chr11 80770876 80770987 -70012566 - MIR SINE MIR -63 199 90 2452 93 0 0 chr11 80771353 80771653 -70011900 - AluSp SINE Alu -13 300 1 197 326 70 0 chr11 80772615 80772701 -70010852 + L2 LINE L2 3150 3241 -31 513 84 0 0 chr11 80772710 80772781 -70010772 + (TGGA)n Simple_repeat Simple_repeat 1 71 0 192 179 0 26 chr11 80772783 80772822 -70010731 + L3 LINE CR1 1525 1562 -15 488 278 16 26 chr11 80772907 80773098 -70010455 - MIR3 SINE MIR 0 208 20 230 81 27 0 chr11 80773105 80773142 -70010411 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 207 200 0 0 chr11 80773438 80773483 -70010070 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1004 153 25 30 chr11 80773913 80774115 -70009438 - L1MB4 LINE L1 -1 6179 5979 456 302 20 7 chr11 80774122 80774271 -70009282 - MIR SINE MIR -56 206 56 235 332 114 9 chr11 80774557 80774777 -70008776 - L2 LINE L2 -85 3187 2945 370 232 21 11 chr11 80775355 80775450 -70008103 - MER115 DNA AcHobo -22 671 576 2080 100 7 7 chr11 80775456 80775736 -70007817 + AluSc SINE Alu 1 280 -29 342 246 17 91 chr11 80775827 80775852 -70007701 - L1MA10 LINE L1 0 6334 6310 1288 175 13 84 chr11 80775852 80776160 -70007393 - L1ME2 LINE L1 -9 6155 5870 658 243 0 7 chr11 80776173 80776317 -70007236 + FRAM SINE Alu 1 139 -37 265 218 23 103 chr11 80776488 80776575 -70006978 - L2 LINE L2 -41 3272 3193 2086 128 0 0 chr11 80776620 80776916 -70006637 + AluSx SINE Alu 1 296 -16 2216 106 7 0 chr11 80776917 80777219 -70006334 + AluSx SINE Alu 1 304 -8 1302 138 59 69 chr11 80777231 80777521 -70006032 + AluJb SINE Alu 2 288 -24 2272 88 0 7 chr11 80777527 80777821 -70005732 - AluSq SINE Alu -16 297 6 348 324 95 17 chr11 80777836 80778077 -70005476 - L2 LINE L2 -726 2588 2329 251 326 57 67 chr11 80778141 80778235 -70005318 - MIR SINE MIR -26 236 143 2435 93 3 0 chr11 80778235 80778546 -70005007 - AluSp SINE Alu -1 312 1 1963 147 23 0 chr11 80778548 80778847 -70004706 - AluSx SINE Alu -6 306 1 251 326 57 67 chr11 80778847 80778942 -70004611 - MIR SINE MIR -120 142 46 4364 88 27 8 chr11 80779040 80779641 -70003912 - LTR9 LTR ERV1 0 612 1 684 180 71 6 chr11 80779713 80779896 -70003657 + L1ME3A LINE L1 5974 6168 -2 204 40 0 0 chr11 80780338 80780363 -70003190 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 371 206 134 31 chr11 80780364 80780461 -70003092 + MIR SINE MIR 48 154 -108 1803 183 63 42 chr11 80780463 80780683 -70002870 + MER63B DNA MER1_type 1 215 -847 730 192 0 8 chr11 80780683 80780813 -70002740 + FLAM_C SINE Alu 1 129 -4 1803 183 63 42 chr11 80780813 80781019 -70002534 + MER63B DNA MER1_type 215 436 0 900 259 33 0 chr11 80781118 80781361 -70002192 - MIR SINE MIR -4 258 8 235 284 148 0 chr11 80781831 80781919 -70001634 - MIR SINE MIR -1 261 161 2127 112 3 0 chr11 80782173 80782458 -70001095 - AluSx SINE Alu -26 286 1 227 200 55 118 chr11 80782565 80782675 -70000878 - MIR SINE MIR -30 232 130 541 229 0 0 chr11 80782688 80782797 -70000756 - MIR SINE MIR -109 153 45 233 187 7 160 chr11 80782809 80782924 -70000629 + L1ME4a LINE L1 5994 6082 -39 2503 79 3 0 chr11 80782924 80783227 -70000326 - AluSp SINE Alu -9 304 1 233 187 7 160 chr11 80783227 80783261 -70000292 + L1ME4a LINE L1 6082 6120 -1 2275 102 3 0 chr11 80783365 80783660 -69999893 + AluSp SINE Alu 1 296 -17 1979 151 0 3 chr11 80784324 80784628 -69998925 + AluJb SINE Alu 1 303 -9 258 32 0 0 chr11 80784682 80784713 -69998840 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 1738 166 0 0 chr11 80785003 80785262 -69998291 - AluSx SINE Alu -53 259 1 2030 124 3 24 chr11 80785336 80785634 -69997919 + AluJo SINE Alu 1 292 -20 180 0 0 0 chr11 80785712 80785732 -69997821 + (CAGGC)n Simple_repeat Simple_repeat 5 24 0 2265 99 3 0 chr11 80786188 80786490 -69997063 - AluSg SINE Alu -7 303 1 2165 112 3 23 chr11 80787159 80787294 -69996259 + AluSx SINE Alu 1 137 -175 2159 100 4 0 chr11 80787294 80787606 -69995947 + AluSg SINE Alu 1 313 0 2165 112 3 23 chr11 80787606 80787773 -69995780 + AluSx SINE Alu 137 298 -14 182 262 48 24 chr11 80787807 80787891 -69995662 - L2 LINE L2 -1444 1870 1785 2432 95 0 0 chr11 80788870 80789176 -69994377 - AluSc SINE Alu -2 307 2 2216 106 7 0 chr11 80789188 80789490 -69994063 - AluSx SINE Alu -8 304 1 2086 128 0 0 chr11 80789491 80789787 -69993766 - AluSx SINE Alu -16 296 1 265 218 23 103 chr11 80789832 80789919 -69993634 + L2 LINE L2 3193 3272 -41 687 227 40 23 chr11 80789957 80790133 -69993420 - MIR SINE MIR -82 180 2 1116 128 97 4 chr11 80790501 80790728 -69992825 + MER44D DNA MER2_type 1 518 -91 200 240 240 8 chr11 80791530 80791655 -69991898 - MIR SINE MIR -17 245 92 1405 193 43 14 chr11 80792514 80792794 -69990759 - MLT1C LTR MaLR -179 288 1 624 149 32 97 chr11 80792794 80792948 -69990605 - L1M4 LINE L1 -395 5789 5646 1930 106 127 9 chr11 80792949 80793280 -69990273 - THE1C LTR MaLR 0 375 6 1444 139 51 104 chr11 80793280 80793465 -69990088 - L1M4 LINE L1 -546 5638 5445 665 150 108 0 chr11 80793465 80793585 -69989968 - FLAM_A SINE Alu 0 133 1 1444 139 51 104 chr11 80793585 80793906 -69989647 - L1M4 LINE L1 -739 5445 5173 1776 158 16 39 chr11 80793906 80794217 -69989336 - AluJb SINE Alu -8 304 1 1444 139 51 104 chr11 80794217 80794282 -69989271 - L1M4 LINE L1 -1011 5173 5106 26 30 0 0 chr11 80794287 80794320 -69989233 + AT_rich Low_complexity Low_complexity 1 33 0 930 133 0 15 chr11 80794325 80794460 -69989093 - FLAM_C SINE Alu 0 133 1 2235 113 0 10 chr11 80794468 80794779 -69988774 - AluSx SINE Alu -4 308 1 4068 146 62 10 chr11 80794783 80795559 -69987994 - L1MA8 LINE L1 -3 6288 5473 655 201 8 0 chr11 80795560 80795694 -69987859 - L1M4 LINE L1 -1025 5121 4987 1710 174 3 10 chr11 80795768 80796056 -69987497 - AluJb SINE Alu -26 286 1 1465 186 51 27 chr11 80796096 80796392 -69987161 + AluJo SINE Alu 9 311 -1 428 215 0 11 chr11 80796524 80796617 -69986936 - L1M4 LINE L1 -1140 5006 4915 258 170 0 38 chr11 80796657 80796710 -69986843 + L2 LINE L2 3176 3226 -87 1641 225 183 85 chr11 80796721 80797263 -69986290 - MLT1G LTR MaLR 0 590 1 1559 204 10 7 chr11 80797339 80797628 -69985925 - AluJo SINE Alu -22 290 1 2147 106 14 0 chr11 80797665 80797958 -69985595 - AluSg SINE Alu -13 297 1 2132 104 28 3 chr11 80798253 80798540 -69985013 - AluSg SINE Alu -16 294 1 28 48 0 0 chr11 80798551 80798593 -69984960 + AT_rich Low_complexity Low_complexity 1 42 0 596 133 0 0 chr11 80798600 80798690 -69984863 + AluS SINE Alu 2 91 -221 524 71 29 0 chr11 80798686 80798756 -69984797 - BC200 scRNA scRNA -127 73 2 * 1137 111 58 6 chr11 80798774 80798945 -69984608 + AluSc SINE Alu 115 294 -15 2332 115 3 6 chr11 80799002 80799315 -69984238 - AluSp SINE Alu -1 312 1 1509 191 25 14 chr11 80799806 80800088 -69983465 + AluJo SINE Alu 6 290 -22 255 206 92 84 chr11 80800101 80800232 -69983321 - L2 LINE L2 -208 3064 2933 972 119 14 0 chr11 80800396 80800539 -69983014 - BC200 scRNA scRNA -54 146 2 1699 247 142 8 chr11 80800579 80801489 -69982064 + L2 LINE L2 2275 3311 -2 514 223 27 9 chr11 80801770 80801882 -69981671 - MER81 DNA DNA 0 114 1 1754 162 0 4 chr11 80804098 80804364 -69979189 + AluJb SINE Alu 1 265 -47 2329 59 3 18 chr11 80805536 80805860 -69977693 - AluY SINE Alu 0 322 3 1733 169 0 53 chr11 80805867 80806194 -69977359 - AluJb SINE Alu 0 311 1 25 90 0 0 chr11 80806197 80806264 -69977289 + AT_rich Low_complexity Low_complexity 1 67 0 319 187 13 40 chr11 80806417 80806492 -69977061 - L1MC5 LINE L1 -728 7233 7161 1430 156 0 22 chr11 80806492 80806717 -69976836 - AluJo SINE Alu -92 220 1 1418 222 85 45 chr11 80807579 80807636 -69975917 - L1MC4a LINE L1 -696 5637 5584 252 0 0 0 chr11 80807642 80807670 -69975883 + (TA)n Simple_repeat Simple_repeat 2 29 0 2081 115 6 22 chr11 80807670 80807977 -69975576 - AluSg1 SINE Alu -5 304 1 1418 222 85 45 chr11 80807977 80808504 -69975049 - L1MC4a LINE L1 -749 5584 5325 2254 120 0 0 chr11 80808504 80808805 -69974748 - AluSc SINE Alu -8 301 1 1418 222 85 45 chr11 80808805 80808870 -69974683 - L1MC4a LINE L1 -1008 5325 5264 2239 117 0 0 chr11 80809073 80809371 -69974182 - AluSx SINE Alu -14 298 1 391 271 36 30 chr11 80809371 80809520 -69974033 - L1MC4a LINE L1 -1122 5024 4877 390 280 47 0 chr11 80810585 80810692 -69972861 - L2 LINE L2 0 3272 3161 212 311 75 0 chr11 80811559 80811665 -69971888 + L2 LINE L2 2943 3056 -216 334 317 21 7 chr11 80811812 80811954 -69971599 + MIR SINE MIR 51 194 -68 541 260 74 155 chr11 80812359 80812725 -69970828 - L2 LINE L2 -431 2883 2489 2396 78 0 0 chr11 80812725 80813018 -69970535 + AluY SINE Alu 1 293 -18 541 260 74 155 chr11 80813018 80813409 -69970144 - L2 LINE L2 -825 2489 2094 731 206 44 0 chr11 80813409 80813569 -69969984 + MIR SINE MIR 75 241 -21 541 260 74 155 chr11 80813569 80813909 -69969644 - L2 LINE L2 -1220 2094 1728 269 237 206 0 chr11 80814071 80814168 -69969385 + L2 LINE L2 3197 3313 0 23 0 0 0 chr11 80814226 80814249 -69969304 + AT_rich Low_complexity Low_complexity 1 23 0 206 282 24 35 chr11 80815249 80815334 -69968219 - L2 LINE L2 -2 3270 3187 2384 100 0 0 chr11 80815695 80815996 -69967557 - AluSg SINE Alu -9 301 1 1778 192 3 0 chr11 80816018 80816315 -69967238 - AluJb SINE Alu -14 298 1 214 205 0 0 chr11 80817646 80817685 -69965868 + (TTA)n Simple_repeat Simple_repeat 2 40 0 390 289 167 17 chr11 80817766 80817946 -69965607 - MIR SINE MIR -7 255 49 2038 138 17 76 chr11 80819450 80819804 -69963749 + MER1B DNA MER1_type 5 337 0 509 241 58 7 chr11 80819899 80820036 -69963517 - L2 LINE L2 -5 3308 3165 611 239 26 0 chr11 80820046 80820159 -69963394 + FLAM_A SINE Alu 1 116 -17 207 0 0 0 chr11 80820160 80820183 -69963370 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4309 24 0 0 chr11 80820185 80820653 -69962900 - L1PA3 LINE L1 -5 6150 5683 23 54 0 0 chr11 80820785 80820822 -69962731 + AT_rich Low_complexity Low_complexity 1 37 0 3442 136 88 13 chr11 80820994 80821462 -69962091 + L1MB7 LINE L1 5485 6016 -168 2351 59 0 7 chr11 80821462 80821779 -69961774 + AluY SINE Alu 1 315 0 3442 136 88 13 chr11 80821779 80821942 -69961611 + L1MB7 LINE L1 6016 6165 -19 249 224 141 35 chr11 80823042 80823127 -69960426 + MIR SINE MIR 16 109 -153 185 306 347 0 chr11 80823136 80823257 -69960296 - MIR SINE MIR -70 192 30 247 276 76 29 chr11 80823362 80823467 -69960086 + MIR SINE MIR 70 179 -83 196 256 0 0 chr11 80823613 80823656 -69959897 + L2 LINE L2 3247 3289 -24 315 0 0 0 chr11 80824182 80824217 -69959336 + (TG)n Simple_repeat Simple_repeat 2 36 0 2542 241 92 23 chr11 80824644 80825057 -69958496 - L1M4 LINE L1 -2088 4058 3675 7411 106 81 15 chr11 80825057 80826209 -69957344 + Tigger3b DNA MER2_type 4 1231 0 2542 241 92 23 chr11 80826209 80826726 -69956827 - L1M4 LINE L1 -2471 3675 3063 184 369 71 0 chr11 80826956 80827040 -69956513 + L2 LINE L2 2926 3015 -257 244 321 64 37 chr11 80827123 80827232 -69956321 + L2 LINE L2 3201 3312 -1 203 61 30 0 chr11 80827882 80827915 -69955638 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 543 310 43 11 chr11 80829549 80829766 -69953787 + MIR SINE MIR 15 234 -28 2363 83 3 16 chr11 80829776 80830090 -69953463 - AluSg SINE Alu 0 310 1 513 0 0 0 chr11 80831186 80831243 -69952310 + (CA)n Simple_repeat Simple_repeat 2 58 0 196 229 0 115 chr11 80831276 80831337 -69952216 - L2 LINE L2 -93 3179 3126 459 273 86 11 chr11 80832400 80832587 -69950966 + MIR SINE MIR 2 202 -60 25 51 0 0 chr11 80832699 80832738 -69950815 + AT_rich Low_complexity Low_complexity 1 39 0 1628 177 37 7 chr11 80833716 80834015 -69949538 + AluJo SINE Alu 1 308 -4 202 262 0 0 chr11 80834698 80834740 -69948813 - MER5A DNA MER1_type -137 52 11 249 108 0 0 chr11 80835723 80835760 -69947793 + (T)n Simple_repeat Simple_repeat 1 37 0 403 273 167 0 chr11 80837026 80837176 -69946377 - MER5A DNA MER1_type -6 183 9 1115 203 0 0 chr11 80837407 80837589 -69945964 + MER5A DNA MER1_type 1 182 -7 264 222 231 17 chr11 80841281 80841398 -69942155 + MIR SINE MIR 63 204 -58 315 311 166 57 chr11 80841654 80841937 -69941616 - L2 LINE L2 -18 3254 2941 410 296 114 23 chr11 80843782 80843966 -69939587 + MIR SINE MIR 3 202 -60 758 209 134 0 chr11 80844023 80844195 -69939358 - MIR SINE MIR -66 196 2 786 128 0 9 chr11 80844248 80844348 -69939205 - AluSg/x SINE Alu -14 296 196 1934 69 0 0 chr11 80844348 80844580 -69938973 - AluSx SINE Alu -80 232 1 323 340 0 0 chr11 80844627 80844721 -69938832 - L3 LINE CR1 -11 1566 1473 2486 108 6 20 chr11 80845206 80845548 -69938005 - MER1B DNA MER1_type 0 337 1 273 259 151 48 chr11 80845659 80845825 -69937728 - MIR SINE MIR -44 218 38 241 310 43 26 chr11 80845916 80846032 -69937521 - L2 LINE L2 -21 3292 3175 322 305 99 53 chr11 80846042 80846173 -69937380 - L2 LINE L2 0 3272 3136 28 0 0 0 chr11 80846181 80846209 -69937344 + AT_rich Low_complexity Low_complexity 1 28 0 224 235 206 0 chr11 80846279 80846347 -69937206 - MIR SINE MIR -68 140 59 418 351 123 9 chr11 80846745 80847117 -69936436 - L2 LINE L2 -172 3100 2682 350 275 246 12 chr11 80847528 80847699 -69935854 - MIR SINE MIR -8 254 44 929 117 0 0 chr11 80848033 80848153 -69935400 + AluSq/x SINE Alu 1 120 -193 186 167 152 15 chr11 80848155 80848221 -69935332 - L2 LINE L2 -576 2738 2664 570 247 113 16 chr11 80848238 80848432 -69935121 + MIR SINE MIR 17 226 -36 768 187 82 22 chr11 80849366 80849548 -69934005 + L2 LINE L2 3121 3313 0 315 252 51 7 chr11 80849559 80849694 -69933859 + MIR SINE MIR 61 205 -57 * 500 297 91 74 chr11 80849680 80850177 -69933376 - L2 LINE L2 0 3272 2743 310 278 128 15 chr11 80850248 80850381 -69933172 - MIR3 SINE MIR -19 189 42 605 178 115 13 chr11 80850585 80850742 -69932811 - L1ME LINE L1 -439 5682 5510 508 93 67 0 chr11 80851448 80851523 -69932030 - MADE1 DNA Mariner 0 80 1 1590 217 69 60 chr11 80851640 80852094 -69931459 + L1MEc LINE L1 2633 3083 -3874 2308 172 70 10 chr11 80852094 80852496 -69931057 - MSTB LTR MaLR 0 426 1 1590 217 69 60 chr11 80852496 80852760 -69930793 + L1MEc LINE L1 3083 3343 -3614 506 269 42 18 chr11 80852815 80852982 -69930571 + L1MEc LINE L1 76 246 -6613 587 211 116 170 chr11 80853221 80853809 -69929744 + L1MEc LINE L1 877 1440 -5439 415 274 0 0 chr11 80853818 80853920 -69929633 + L1MEc LINE L1 3417 3518 -3439 1403 225 88 50 chr11 80853936 80854479 -69929074 + L1MEc LINE L1 4733 5296 -1661 * 2237 208 24 22 chr11 80854478 80854614 -69928939 - L1 LINE L1 -3086 4479 4345 2306 96 0 0 chr11 80854614 80854905 -69928648 + AluSg SINE Alu 1 291 -19 2237 208 24 22 chr11 80854905 80855272 -69928281 - L1 LINE L1 -3220 4345 3975 21856 115 85 10 chr11 80855275 80856358 -69927195 - L1 LINE L1 -3684 3881 2882 2831 78 20 0 chr11 80856358 80856704 -69926849 - THE1A LTR MaLR -2 353 1 12836 88 3 0 chr11 80856704 80858279 -69925274 - THE1A-int LTR MaLR 0 1580 1 3046 73 0 0 chr11 80858279 80858634 -69924919 - THE1A LTR MaLR 0 355 1 21856 115 85 10 chr11 80858634 80858825 -69924728 - L1 LINE L1 -4683 2882 2707 2436 113 129 5 chr11 80858825 80859206 -69924347 + MSTA LTR MaLR 1 428 0 21856 115 85 10 chr11 80859206 80861518 -69922035 - L1 LINE L1 -4858 2707 17 2528 187 44 27 chr11 80861518 80862751 -69920802 + L1MEc LINE L1 5283 6630 -345 1888 191 14 5 chr11 80862753 80863124 -69920429 + L1M4 LINE L1 3543 3916 -2230 2259 126 0 0 chr11 80863125 80863434 -69920119 + AluSx SINE Alu 1 309 -3 30 0 0 0 chr11 80863434 80863464 -69920089 + AT_rich Low_complexity Low_complexity 1 30 0 1060 149 11 33 chr11 80863464 80863645 -69919908 + AluSg/x SINE Alu 120 296 -16 198 0 0 0 chr11 80863699 80863721 -69919832 + (T)n Simple_repeat Simple_repeat 1 22 0 887 292 10 10 chr11 80863901 80864199 -69919354 + AluYb8 SINE Alu 13 310 -8 199 362 104 11 chr11 80864227 80864495 -69919058 - L2 LINE L2 -338 2976 2684 446 254 91 0 chr11 80864765 80864875 -69918678 - L2 LINE L2 0 3313 3194 218 225 99 0 chr11 80864871 80864942 -69918611 + MER5B DNA MER1_type 88 165 -13 * 2579 115 37 3 chr11 80864943 80865318 -69918235 + MLT1B LTR MaLR 3 390 0 508 291 22 124 chr11 80866143 80866642 -69916911 + L2 LINE L2 2818 3265 -7 284 289 62 10 chr11 80866683 80866780 -69916773 - MIR SINE MIR -62 146 45 2012 90 4 4 chr11 80866964 80867219 -69916334 + AluSx SINE Alu 5 259 -53 258 32 0 0 chr11 80867509 80867540 -69916013 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1932 148 3 3 chr11 80867594 80867897 -69915656 - AluJb SINE Alu -9 303 1 2173 102 3 0 chr11 80868560 80868855 -69914698 - AluSp SINE Alu -17 296 1 388 209 7 137 chr11 80868958 80868992 -69914561 - L1ME4a LINE L1 -1 6120 6083 2383 79 3 0 chr11 80868992 80869295 -69914258 + AluSp SINE Alu 1 304 -9 388 209 7 137 chr11 80869295 80869399 -69914154 - L1ME4a LINE L1 -38 6083 6000 608 244 37 5 chr11 80869399 80869550 -69914003 + MIR SINE MIR 17 168 -40 228 200 55 118 chr11 80869544 80869654 -69913899 + MIR SINE MIR 130 232 -30 * 2031 120 3 19 chr11 80869761 80870077 -69913476 + AluSx SINE Alu 1 311 -1 253 271 177 0 chr11 80870292 80870388 -69913165 + MIR SINE MIR 149 261 -1 939 268 32 0 chr11 80870851 80871101 -69912452 + MIR SINE MIR 1 258 -4 1658 185 63 42 chr11 80871200 80871406 -69912147 - MER63B DNA MER1_type -626 436 236 749 192 0 8 chr11 80871406 80871536 -69912017 - FLAM_C SINE Alu -4 129 1 1658 185 63 42 chr11 80871536 80871756 -69911797 - MER63B DNA MER1_type -826 236 1 371 264 133 1 chr11 80871756 80871856 -69911697 - MIR SINE MIR -59 149 43 204 40 0 0 chr11 80871856 80871881 -69911672 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 371 264 133 1 chr11 80871881 80871893 -69911660 - MIR SINE MIR -165 43 34 640 202 66 0 chr11 80872323 80872506 -69911047 - L1ME3A LINE L1 -2 6168 5974 3732 78 30 9 chr11 80872578 80873104 -69910449 + LTR9 LTR ERV1 1 537 -75 180 0 0 0 chr11 80873224 80873244 -69910309 + (C)n Simple_repeat Simple_repeat 1 20 0 333 0 0 0 chr11 80873271 80873308 -69910245 + (A)n Simple_repeat Simple_repeat 1 37 0 1856 216 63 15 chr11 80873308 80873736 -69909817 - MLT1D LTR MaLR -25 480 27 2272 99 0 0 chr11 80873736 80874039 -69909514 - AluSx SINE Alu -9 303 1 1856 216 63 15 chr11 80874039 80874068 -69909485 - MLT1D LTR MaLR -478 27 1 423 315 55 0 chr11 80874106 80874233 -69909320 - MER94 DNA DNA 0 134 1 527 218 55 0 chr11 80874255 80874365 -69909188 - MIR3 SINE MIR -52 156 41 315 206 22 87 chr11 80874477 80874569 -69908984 - MIR SINE MIR -1 261 176 294 188 86 70 chr11 80874922 80875050 -69908503 - L1ME4a LINE L1 -28 6093 5964 212 189 0 0 chr11 80875050 80875087 -69908466 + T-rich Low_complexity Low_complexity 1 37 0 301 333 20 40 chr11 80875116 80875266 -69908287 - L1MC5 LINE L1 -32 7929 7783 337 316 27 53 chr11 80875812 80875999 -69907554 - MIR3 SINE MIR -3 205 24 207 273 61 0 chr11 80876196 80876262 -69907291 - MIR3 SINE MIR -15 193 124 389 339 85 0 chr11 80876376 80876541 -69907012 + MIR SINE MIR 54 232 -30 1775 163 3 10 chr11 80876739 80877052 -69906501 - AluJo SINE Alu -1 311 1 287 263 99 36 chr11 80877332 80877565 -69905988 + MIR SINE MIR 20 261 -1 305 303 22 0 chr11 80877917 80878006 -69905547 - MIR SINE MIR -60 148 58 270 276 149 0 chr11 80879929 80880016 -69903537 + L2 LINE L2 3168 3267 -5 400 234 27 18 chr11 80880135 80880246 -69903307 + MIR3 SINE MIR 88 199 -9 449 303 151 0 chr11 80881882 80882067 -69901486 + MIR SINE MIR 48 260 -2 334 267 100 20 chr11 80882282 80882432 -69901121 + MIR SINE MIR 31 192 -70 298 314 16 0 chr11 80882646 80882770 -69900783 - L2 LINE L2 -551 2763 2638 307 276 95 9 chr11 80882922 80883038 -69900515 + MER5A DNA MER1_type 44 169 -20 201 263 13 53 chr11 80883171 80883247 -69900306 + MIR SINE MIR 114 186 -76 948 103 9 181 chr11 80883778 80884010 -69899543 + 7SK RNA RNA 1 192 -1 281 194 48 0 chr11 80884036 80884121 -69899432 + MIR SINE MIR 45 138 -70 859 253 8 40 chr11 80884244 80884383 -69899170 + MIR SINE MIR 20 149 -113 1872 214 67 121 chr11 80884383 80885010 -69898543 + MLT1E LTR MaLR 1 593 0 859 253 8 40 chr11 80885010 80885119 -69898434 + MIR SINE MIR 149 260 -2 306 161 18 0 chr11 80885277 80885332 -69898221 - MLT1L LTR MaLR 0 615 560 852 299 48 36 chr11 80885332 80885747 -69897806 - LTR16C LTR ERVL 0 491 72 491 304 126 13 chr11 80885828 80886058 -69897495 - MLT1L LTR MaLR -50 565 310 661 244 25 45 chr11 80886274 80886516 -69897037 + L2 LINE L2 2511 2747 -567 187 256 0 0 chr11 80886781 80886820 -69896733 + L2 LINE L2 3265 3303 -10 204 200 0 0 chr11 80886853 80886898 -69896655 + (CCA)n Simple_repeat Simple_repeat 1 45 0 280 176 132 0 chr11 80886901 80886969 -69896584 - Zaphod DNA AcHobo -5 4026 3950 189 382 92 0 chr11 80887026 80887157 -69896396 + L2 LINE L2 2922 3064 -249 1423 257 32 28 chr11 80887340 80887633 -69895920 + MER115 DNA AcHobo 1 291 -402 2110 248 52 24 chr11 80887633 80887690 -69895863 - MLT1G LTR MaLR -1 589 535 2039 149 3 0 chr11 80887690 80887998 -69895555 - AluJo SINE Alu -2 310 2 2110 248 52 24 chr11 80887998 80888513 -69895040 - MLT1G LTR MaLR -55 535 1 1423 257 32 28 chr11 80888513 80888860 -69894693 + MER115 DNA AcHobo 291 693 0 240 238 0 0 chr11 80888860 80888923 -69894630 + (TGG)n Simple_repeat Simple_repeat 3 65 0 210 146 0 83 chr11 80888924 80888972 -69894581 - L2 LINE L2 -2 3311 3268 379 341 159 13 chr11 80889019 80889327 -69894226 - L2 LINE L2 -1 3271 2919 224 305 66 75 chr11 80889816 80890029 -69893524 - L2 LINE L2 -482 2832 2622 284 276 30 43 chr11 80890056 80890164 -69893389 + MIR SINE MIR 15 118 -107 632 231 12 0 chr11 80890797 80890966 -69892587 + L1MA4 LINE L1 5946 6116 -184 515 185 51 6 chr11 80890953 80891071 -69892482 + L1MA4A LINE L1 6053 6155 -1 * 322 287 87 13 chr11 80891109 80891259 -69892294 + MIR SINE MIR 52 212 -50 189 345 117 0 chr11 80891518 80891689 -69891864 + L2 LINE L2 1606 1796 -1518 190 375 28 0 chr11 80891882 80892026 -69891527 + L2 LINE L2 2125 2272 -1042 180 368 119 20 chr11 80892190 80892391 -69891162 + L2 LINE L2 2566 2786 -528 933 135 0 0 chr11 80893532 80893665 -69889888 + FLAM_C SINE Alu 1 133 0 278 274 89 0 chr11 80893824 80893948 -69889605 + MIR3 SINE MIR 13 147 -61 2049 116 0 3 chr11 80894051 80894366 -69889187 - AluSx SINE Alu 0 314 1 321 299 31 55 chr11 80894504 80894631 -69888922 + MIR SINE MIR 20 143 -65 284 327 28 7 chr11 80894795 80894943 -69888610 + MIR SINE MIR 30 181 -62 21 0 0 0 chr11 80895000 80895021 -69888532 + AT_rich Low_complexity Low_complexity 1 21 0 192 320 158 8 chr11 80895943 80896190 -69887363 + L2 LINE L2 2472 2755 -559 337 181 21 21 chr11 80896289 80896383 -69887170 + GA-rich Low_complexity Low_complexity 1 94 0 1989 99 25 48 chr11 80896612 80896926 -69886627 - AluSq SINE Alu -6 307 1 237 108 0 0 chr11 80897186 80897223 -69886330 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 447 19 0 0 chr11 80897225 80897277 -69886276 + (CA)n Simple_repeat Simple_repeat 2 53 0 382 276 119 61 chr11 80897815 80898210 -69885343 + L3 LINE CR1 1158 1575 -2 608 247 105 11 chr11 80898630 80898820 -69884733 + MIR SINE MIR 33 240 -22 2110 102 24 0 chr11 80899169 80899486 -69884067 - AluSx SINE Alu 0 312 1 394 324 186 5 chr11 80899488 80899698 -69883855 - L3 LINE CR1 -4 1573 1326 536 223 211 0 chr11 80899714 80899889 -69883664 - MIR SINE MIR -7 255 44 501 282 18 0 chr11 80899910 80900073 -69883480 - L3 LINE CR1 -244 1333 1168 919 199 106 4 chr11 80900078 80900314 -69883239 + MIR SINE MIR 3 262 0 1947 134 10 10 chr11 80900527 80900833 -69882720 + AluJb SINE Alu 2 307 -5 278 313 75 15 chr11 80902321 80902455 -69881098 + MIR3 SINE MIR 15 156 -52 252 343 0 0 chr11 80902643 80902710 -69880843 + L2 LINE L2 3116 3182 -90 324 157 18 0 chr11 80902809 80902877 -69880676 + MIR3 SINE MIR 100 170 -38 2081 117 7 16 chr11 80903011 80903318 -69880235 - AluSx SINE Alu -8 304 1 2175 187 24 24 chr11 80903318 80903858 -69879695 + L1MB7 LINE L1 3940 4479 -1667 229 227 0 0 chr11 80903858 80903902 -69879651 + AluJ/monomer SINE Alu 5 48 -254 1700 79 0 0 chr11 80903957 80904172 -69879381 + AluSq SINE Alu 1 215 -98 204 40 0 0 chr11 80904172 80904197 -69879356 + (GA)n Simple_repeat Simple_repeat 1 25 0 3235 170 45 53 chr11 80904197 80904727 -69878826 + L1MB7 LINE L1 4492 5025 -1159 960 150 32 27 chr11 80904727 80904872 -69878681 + L1MB2 LINE L1 5983 6131 -40 2240 42 28 11 chr11 80904872 80905156 -69878397 + AluY SINE Alu 1 289 -22 960 150 32 27 chr11 80905156 80905197 -69878356 + L1MB2 LINE L1 6131 6170 -1 3235 170 45 53 chr11 80905197 80906104 -69877449 + L1MB7 LINE L1 5025 5907 -277 281 342 31 19 chr11 80906442 80906603 -69876950 - L2 LINE L2 -1003 2311 2149 413 265 64 25 chr11 80906690 80906907 -69876646 + MIR SINE MIR 38 262 0 563 227 21 77 chr11 80907625 80907819 -69875734 - MIR3 SINE MIR -20 188 6 231 274 40 109 chr11 80908222 80908470 -69875083 - L2 LINE L2 -2 3270 3040 2267 104 3 0 chr11 80908486 80908794 -69874759 - AluSq SINE Alu -2 311 3 2079 20 8 8 chr11 80908816 80909062 -69874491 + AluYb8 SINE Alu 63 308 -10 309 202 160 21 chr11 80912275 80912369 -69871184 - MIR SINE MIR -82 126 20 200 200 0 0 chr11 80912422 80912462 -69871091 + L2 LINE L2 3025 3064 -208 251 282 114 30 chr11 80913959 80914090 -69869463 + MIR SINE MIR 85 226 -36 725 241 35 6 chr11 80914348 80914518 -69869035 + MIR SINE MIR 2 176 -86 317 292 80 0 chr11 80914709 80914822 -69868731 - MIR SINE MIR -58 150 29 2521 43 0 0 chr11 80914981 80915281 -69868272 + AluY SINE Alu 1 300 -11 306 339 46 0 chr11 80915557 80915687 -69867866 - L2 LINE L2 0 3272 3137 575 171 72 0 chr11 80916367 80916478 -69867075 - L2 LINE L2 -7 3306 3188 331 330 43 0 chr11 80916620 80916735 -69866818 - L2 LINE L2 0 3272 3153 733 103 0 0 chr11 80916743 80916840 -69866713 + AluJ/FLAM SINE Alu 4 100 -212 2195 117 0 7 chr11 80916848 80917157 -69866396 - AluSc SINE Alu -2 307 1 22 0 0 0 chr11 80917162 80917184 -69866369 + AT_rich Low_complexity Low_complexity 1 22 0 229 221 15 114 chr11 80917284 80917415 -69866138 - L2 LINE L2 -189 3083 2966 182 273 0 0 chr11 80917958 80918002 -69865551 - L3 LINE CR1 -1 1576 1533 463 267 87 12 chr11 80919987 80920159 -69863394 - MIR SINE MIR -4 258 74 707 298 110 61 chr11 80920222 80920375 -69863178 - L2 LINE L2 0 3313 3169 2215 92 7 3 chr11 80920375 80920680 -69862873 + AluSx SINE Alu 7 312 0 707 298 110 61 chr11 80920680 80920744 -69862809 - L2 LINE L2 -144 3169 3110 2038 106 3 0 chr11 80920744 80921058 -69862495 + AluSx SINE Alu 1 315 0 707 298 110 61 chr11 80921058 80921302 -69862251 - L2 LINE L2 -203 3110 2842 2145 111 0 19 chr11 80921302 80921617 -69861936 + AluSc SINE Alu 1 309 0 707 298 110 61 chr11 80921617 80921730 -69861823 - L2 LINE L2 -471 2842 2736 744 241 47 97 chr11 80921817 80921884 -69861669 - L2 LINE L2 -563 2751 2682 1844 137 0 4 chr11 80921884 80922190 -69861363 + AluJb SINE Alu 5 309 0 744 241 47 97 chr11 80922190 80922461 -69861092 - L2 LINE L2 -632 2682 2429 229 292 28 0 chr11 80923525 80923597 -69859956 + MIR SINE MIR 19 92 -116 334 274 48 0 chr11 80924056 80924140 -69859413 + MIR SINE MIR 35 122 -140 328 256 43 17 chr11 80924223 80924340 -69859213 - MIR3 SINE MIR -74 134 15 215 125 36 36 chr11 80924393 80924449 -69859104 + C-rich Low_complexity Low_complexity 5 60 0 378 0 0 0 chr11 80924451 80924493 -69859060 + (CA)n Simple_repeat Simple_repeat 2 43 0 187 152 43 43 chr11 80925100 80925146 -69858407 + L2 LINE L2 3225 3270 -2 360 296 163 25 chr11 80925802 80926005 -69857548 - L3 LINE CR1 -54 1523 1293 484 279 19 45 chr11 80926779 80926933 -69856620 + MIR3 SINE MIR 58 207 -1 796 277 36 9 chr11 80927400 80927620 -69855933 + MIR SINE MIR 31 256 -6 669 280 62 38 chr11 80927917 80928335 -69855218 - L2 LINE L2 -452 2862 2435 611 141 0 0 chr11 80928395 80928487 -69855066 - Tigger7 DNA MER2_type 0 2491 2400 * 3201 176 8 0 chr11 80928486 80929003 -69854550 - Tigger7 DNA MER2_type -1965 522 2 355 289 237 31 chr11 80929022 80929313 -69854240 - L2 LINE L2 -2 3270 2920 230 100 0 0 chr11 80929340 80929370 -69854183 - Tigger7 DNA MER2_type -2110 377 348 400 358 56 44 chr11 80929600 80929921 -69853632 + L2 LINE L2 2862 3186 -86 2240 89 3 0 chr11 80930058 80930360 -69853193 - AluSc SINE Alu -6 303 1 219 326 23 12 chr11 80931075 80931161 -69852392 + MIR SINE MIR 58 144 -64 291 160 200 20 chr11 80931297 80931397 -69852156 - MIR3 SINE MIR 0 208 91 233 235 47 24 chr11 80931464 80931549 -69852004 + L3b LINE CR1 1300 1386 -197 572 322 45 30 chr11 80932169 80932368 -69851185 - MIR3 SINE MIR -6 202 1 1762 167 3 0 chr11 80932481 80932774 -69850779 - AluJo SINE Alu -18 294 1 329 268 12 0 chr11 80933506 80933588 -69849965 - MIR SINE MIR -81 127 45 649 180 0 65 chr11 80933589 80933759 -69849794 - FLAM_A SINE Alu 0 133 1 383 275 14 51 chr11 80933779 80933917 -69849636 + MIR3 SINE MIR 76 208 0 690 250 49 11 chr11 80934384 80934568 -69848985 - MIR SINE MIR -23 239 49 237 262 107 24 chr11 80934754 80934838 -69848715 + MIR3 SINE MIR 15 105 -103 230 279 15 15 chr11 80934958 80935026 -69848527 - MIR SINE MIR -76 132 65 319 314 92 16 chr11 80935035 80935220 -69848333 - MIR SINE MIR -6 256 58 529 253 117 0 chr11 80935316 80935470 -69848083 + MIR SINE MIR 21 192 -70 389 322 6 29 chr11 80936120 80936291 -69847262 + GA-rich Low_complexity Low_complexity 1 167 0 229 143 41 0 chr11 80936423 80936472 -69847081 + (CGG)n Simple_repeat Simple_repeat 1 51 0 187 250 0 0 chr11 80937345 80937385 -69846168 + L2 LINE L2 3179 3218 -95 241 360 8 40 chr11 80937478 80937603 -69845950 + MIR3 SINE MIR 10 130 -78 2109 86 31 3 chr11 80938280 80938571 -69844982 - AluSq SINE Alu -14 299 1 493 333 120 38 chr11 80938806 80939199 -69844354 + L2 LINE L2 2848 3272 0 1681 114 50 39 chr11 80939297 80939602 -69843951 + AluJb SINE Alu 1 308 0 754 287 82 23 chr11 80939744 80940047 -69843506 - L3 LINE CR1 -97 1480 1160 325 329 28 42 chr11 80940039 80940182 -69843371 + L2 LINE L2 2898 3038 -234 * 472 248 34 8 chr11 80940178 80940295 -69843258 - L2 LINE L2 -1 3271 3152 252 328 112 9 chr11 80940380 80940496 -69843057 + L2 LINE L2 3139 3266 -6 215 158 26 0 chr11 80940494 80940532 -69843021 - L3 LINE CR1 -370 1207 1169 * 1989 197 58 0 chr11 80940714 80941125 -69842428 + MER63B DNA MER1_type 1 435 -1 461 156 144 11 chr11 80941187 80941277 -69842276 + FLAM_A SINE Alu 8 109 -33 324 0 0 0 chr11 80941286 80941322 -69842231 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 327 274 0 14 chr11 80941549 80941622 -69841931 + L2 LINE L2 3242 3313 0 832 242 83 91 chr11 80942126 80942160 -69841393 + L2 LINE L2 2681 2714 -599 2000 157 0 0 chr11 80942160 80942472 -69841081 + AluJb SINE Alu 1 312 0 832 242 83 91 chr11 80942472 80942545 -69841008 + L2 LINE L2 2714 2786 -527 1799 166 0 0 chr11 80942545 80942846 -69840707 + AluJb SINE Alu 5 305 -7 832 242 83 91 chr11 80942846 80943281 -69840272 + L2 LINE L2 2786 3216 -97 813 153 0 44 chr11 80943281 80943418 -69840135 - FLAM_C SINE Alu -1 132 2 832 242 83 91 chr11 80943418 80943484 -69840069 + L2 LINE L2 3216 3281 -32 282 307 79 8 chr11 80944465 80944592 -69838961 + L2 LINE L2 3169 3304 -9 534 286 27 60 chr11 80944801 80944986 -69838567 + MIR3 SINE MIR 23 201 -7 25 31 0 0 chr11 80945709 80945741 -69837812 + AT_rich Low_complexity Low_complexity 1 32 0 3469 50 0 0 chr11 80945745 80946162 -69837391 - L1PA5 LINE L1 -1 6153 5737 228 61 0 61 chr11 80946222 80946271 -69837282 + L1MA8 LINE L1 6246 6291 0 2142 115 0 3 chr11 80946272 80946577 -69836976 + AluSg SINE Alu 1 304 -6 2370 83 0 3 chr11 80946772 80947084 -69836469 + AluY SINE Alu 1 311 0 398 222 25 0 chr11 80947272 80947353 -69836200 + L2 LINE L2 3218 3300 -13 252 0 0 0 chr11 80947353 80947381 -69836172 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1855 138 3 49 chr11 80947509 80947834 -69835719 + AluSx SINE Alu 1 310 -2 215 307 40 13 chr11 80947884 80947959 -69835594 + MIR SINE MIR 180 256 -6 253 326 101 34 chr11 80947999 80948177 -69835376 + L2 LINE L2 2869 3058 -214 2483 46 20 0 chr11 80948427 80948732 -69834821 + AluY SINE Alu 1 311 0 236 221 69 99 chr11 80949834 80949965 -69833588 - LTR67 LTR ERVL -391 166 40 2015 151 3 0 chr11 80949967 80950278 -69833275 + AluJb SINE Alu 1 312 0 297 75 0 0 chr11 80950278 80950318 -69833235 + (GGAA)n Simple_repeat Simple_repeat 4 43 0 265 263 141 39 chr11 80950583 80950739 -69832814 - MER5B DNA MER1_type -1 177 6 231 36 0 0 chr11 80950746 80950774 -69832779 + (T)n Simple_repeat Simple_repeat 1 28 0 2339 61 0 0 chr11 80951301 80951594 -69831959 - AluY SINE Alu -18 293 1 494 258 39 52 chr11 80951594 80951749 -69831804 - MIR3 SINE MIR -54 154 2 1694 135 69 0 chr11 80952262 80952536 -69831017 - AluJb SINE Alu -19 293 1 843 265 188 30 chr11 80952840 80953436 -69830117 - L2 LINE L2 -634 2680 1991 21 0 0 0 chr11 80954020 80954041 -69829512 + GC_rich Low_complexity Low_complexity 1 21 0 192 158 0 0 chr11 80954111 80954149 -69829404 + (CCG)n Simple_repeat Simple_repeat 1 38 0 23 101 0 0 chr11 80954239 80954318 -69829235 + GC_rich Low_complexity Low_complexity 1 79 0 27 49 0 0 chr11 80954382 80954423 -69829130 + GC_rich Low_complexity Low_complexity 1 41 0 195 217 50 67 chr11 80954998 80955058 -69828495 + MIR SINE MIR 200 258 -4 1824 93 7 29 chr11 80955669 80955948 -69827605 - AluSg SINE Alu -2 308 36 2048 105 16 7 chr11 80955948 80956252 -69827301 - AluSx SINE Alu -4 308 1 567 128 64 0 chr11 80956264 80956358 -69827195 - MIR SINE MIR -74 188 89 25 0 0 0 chr11 80956945 80956970 -69826583 + AT_rich Low_complexity Low_complexity 1 25 0 2267 84 6 13 chr11 80957033 80957344 -69826209 + AluSc SINE Alu 1 309 0 1942 120 7 10 chr11 80957395 80957694 -69825859 + AluSx SINE Alu 1 298 -14 495 203 201 26 chr11 80957751 80957991 -69825562 - L1MC4a LINE L1 -311 5810 5665 26 0 0 0 chr11 80958034 80958060 -69825493 + AT_rich Low_complexity Low_complexity 1 26 0 2203 75 7 3 chr11 80958060 80958352 -69825201 - AluSp SINE Alu -20 293 1 249 287 81 11 chr11 80958364 80958451 -69825102 - MIR3 SINE MIR -49 159 67 387 167 0 26 chr11 80958582 80958660 -69824893 + MADE1 DNA Mariner 2 77 -3 300 272 117 10 chr11 80959173 80959276 -69824277 - L2 LINE L2 -8 3305 3192 2042 124 3 0 chr11 80959623 80959930 -69823623 + AluSx SINE Alu 1 308 -4 580 343 105 21 chr11 80960534 80961190 -69822363 - L2 LINE L2 -5 3267 2557 218 315 205 16 chr11 80961198 80961325 -69822228 - L2 LINE L2 0 3272 3122 757 248 150 13 chr11 80961400 80961626 -69821927 + MIR SINE MIR 3 259 -3 186 326 163 30 chr11 80961734 80961998 -69821555 - L2 LINE L2 -357 2957 2659 37516 30 1 2 chr11 80962081 80963590 -69819963 - L1PA2 LINE L1 0 6155 4646 2513 24 0 10 chr11 80963590 80963888 -69819665 - AluYa5 SINE Alu -16 295 1 37516 30 1 2 chr11 80963888 80967631 -69815922 - L1PA2 LINE L1 -1509 4646 908 741 12 0 0 chr11 80967631 80967713 -69815840 - L1PA2 LINE L1 -6050 96 15 318 283 0 0 chr11 80967718 80967810 -69815743 + L1MC4a LINE L1 391 482 -5934 1490 293 109 46 chr11 80967813 80968927 -69814626 + L1MC4a LINE L1 366 1549 -4867 918 210 0 0 chr11 80968932 80969094 -69814459 - FRAM SINE Alu -3 163 2 308 319 189 28 chr11 80969094 80969336 -69814217 + L1MC4a LINE L1 1380 1661 -4765 1647 128 64 20 chr11 80969337 80969635 -69813918 + AluSp SINE Alu 2 312 -1 1822 161 18 0 chr11 80970016 80970295 -69813258 + AluJb SINE Alu 1 284 -28 304 262 90 51 chr11 80970345 80970600 -69812953 + L1MC4a LINE L1 2925 3185 -3241 2294 81 16 38 chr11 80970603 80970923 -69812630 + AluSq SINE Alu 1 313 0 614 244 154 32 chr11 80970939 80971341 -69812212 + L1MC4a LINE L1 3346 3796 -2630 * 1391 176 130 59 chr11 80971339 80971845 -69811708 + L1MC5 LINE L1 7384 7925 -36 825 159 8 8 chr11 80972091 80972223 -69811330 - FLAM_C SINE Alu -10 133 2 528 259 64 34 chr11 80972223 80972459 -69811094 + L1MC4a LINE L1 3995 4237 -2189 1591 155 56 43 chr11 80972482 80972643 -69810910 - AluSx SINE Alu -4 308 140 2152 65 0 29 chr11 80972643 80972921 -69810632 - AluY SINE Alu -1 310 41 1591 155 56 43 chr11 80972921 80973063 -69810490 - AluSx SINE Alu -172 140 1 545 291 132 28 chr11 80973114 80973409 -69810144 + L1MC4a LINE L1 4952 5215 -1235 2190 128 0 0 chr11 80973409 80973707 -69809846 + AluSx SINE Alu 1 298 -14 545 291 132 28 chr11 80973707 80973847 -69809706 + L1MC4a LINE L1 5215 5339 -1111 1659 152 59 10 chr11 80973847 80974137 -69809416 + AluJo SINE Alu 1 304 -8 545 291 132 28 chr11 80974137 80974827 -69808726 + L1MC4a LINE L1 5339 6057 -393 1595 178 22 7 chr11 80974901 80975176 -69808377 - AluJb SINE Alu -33 279 1 2263 108 0 6 chr11 80975878 80976192 -69807361 - AluSx SINE Alu 0 312 1 742 166 120 83 chr11 80976355 80976518 -69807035 + MER46B DNA MER2_type 3 52 -2679 1747 162 7 7 chr11 80976518 80976802 -69806751 + AluJo SINE Alu 13 296 -16 742 166 120 83 chr11 80976802 80976855 -69806698 + MER46B DNA MER2_type 52 102 -134 685 150 0 0 chr11 80976856 80976956 -69806597 + AluJ/FLAM SINE Alu 2 101 -211 1762 216 99 7 chr11 80976956 80977410 -69806143 + L1M4 LINE L1 3667 4162 -1984 379 311 47 55 chr11 80977870 80978250 -69805303 + L2 LINE L2 2819 3195 -77 393 255 135 34 chr11 80979090 80979298 -69804255 - MIR SINE MIR -11 251 23 207 213 43 0 chr11 80980652 80980699 -69802854 + MIR SINE MIR 87 135 -73 782 113 73 0 chr11 80981203 80981327 -69802226 - FLAM_C SINE Alu 0 133 1 584 223 22 119 chr11 80981725 80981994 -69801559 - MIR SINE MIR -2 260 18 398 254 42 0 chr11 80982143 80982316 -69801237 + MIR SINE MIR 4 183 -79 482 225 158 0 chr11 80983509 80983629 -69799924 - L2 LINE L2 0 3272 3134 941 272 81 62 chr11 80983794 80984228 -69799325 + MLT1J2 LTR MaLR 1 442 -8 722 288 83 25 chr11 80984491 80984852 -69798701 - L2 LINE L2 -818 2496 2115 1569 199 42 3 chr11 80984865 80985176 -69798377 - MER58B DNA MER1_type 0 341 19 360 246 65 72 chr11 80985164 80985230 -69798323 + MER58A DNA MER1_type 19 84 -257 * 2075 95 9 95 chr11 80985230 80985567 -69797986 + AluSq SINE Alu 1 308 -5 360 246 65 72 chr11 80985567 80985638 -69797915 + MER58A DNA MER1_type 84 155 -69 2083 115 17 0 chr11 80986345 80986640 -69796913 + AluSg SINE Alu 1 300 -10 377 245 122 64 chr11 80986642 80986830 -69796723 - L2 LINE L2 0 3313 3115 888 242 75 20 chr11 80986866 80987172 -69796381 + L1MCc LINE L1 51 373 -6050 353 319 98 12 chr11 80987176 80987339 -69796214 + L1MCc LINE L1 411 587 -5836 867 208 79 53 chr11 80987441 80987706 -69795847 + L1MCc LINE L1 807 1078 -5345 3079 221 83 16 chr11 80987713 80988666 -69794887 + L1MCc LINE L1 3005 4021 -2920 996 178 69 5 chr11 80988735 80988937 -69794616 + L1 LINE L1 4836 5050 -1096 583 283 79 57 chr11 80989101 80989468 -69794085 + L2 LINE L2 2934 3308 -5 477 221 63 16 chr11 80991126 80991253 -69792300 + MLT1H LTR MaLR 1 133 -416 1338 250 114 76 chr11 80991265 80991699 -69791854 + MER21B LTR ERV1 13 480 -383 3751 122 2 4 chr11 80991699 80992225 -69791328 + MER1A DNA MER1_type 3 527 0 1338 250 114 76 chr11 80992225 80992431 -69791122 + MER21B LTR ERV1 480 677 -186 420 266 199 23 chr11 80992497 80992753 -69790800 + MLT1H LTR MaLR 131 431 -118 217 327 0 0 chr11 80993295 80993350 -69790203 + L2 LINE L2 3215 3269 -3 348 309 33 39 chr11 80993693 80993874 -69789679 + L2 LINE L2 2753 2932 -382 930 353 2 22 chr11 80994843 80995260 -69788293 + L1M3a LINE L1 15 423 -5532 2264 235 41 82 chr11 80996298 80996729 -69786824 + L1M3f LINE L1 555 946 -4521 1917 169 0 6 chr11 80996729 80997043 -69786510 - AluJo SINE Alu 0 312 1 2264 235 41 82 chr11 80997043 80997452 -69786101 + L1M3f LINE L1 946 1370 -4097 230 243 157 0 chr11 80997456 80997526 -69786027 + L1PA15 LINE L1 834 914 -5873 5722 234 61 36 chr11 80997584 80998405 -69785148 + L1PA15 LINE L1 1645 2444 -4353 2050 140 13 7 chr11 80998405 80998705 -69784848 - AluSx SINE Alu -10 302 1 5722 234 61 36 chr11 80998705 80999803 -69783750 + L1PA15 LINE L1 2444 3612 -3185 1253 227 21 86 chr11 80999803 81000221 -69783332 + LTR9 LTR ERV1 1 391 -221 740 244 98 29 chr11 81000199 81000474 -69783079 + LTR19C LTR ERV1 486 779 0 * 4591 194 49 10 chr11 81000487 81001984 -69781569 + HUERS-P3 LTR ERV1 15 1652 -7267 * 35718 115 18 11 chr11 81001981 81004444 -69779109 + HUERS-P3 LTR ERV1 1791 4237 -4682 2457 72 10 3 chr11 81004444 81004751 -69778802 + AluSc SINE Alu 1 309 0 35718 115 18 11 chr11 81004751 81006085 -69777468 + HUERS-P3 LTR ERV1 4237 5561 -3358 1834 144 36 7 chr11 81006085 81006363 -69777190 + AluSx SINE Alu 1 286 -26 35718 115 18 11 chr11 81006363 81007654 -69775899 + HUERS-P3 LTR ERV1 5561 6912 -2007 43461 32 22 9 chr11 81007955 81014023 -69769530 - L1PA2 LINE L1 -2 6153 7 1491 166 19 12 chr11 81014038 81014297 -69769256 + HUERS-P3 LTR ERV1 8659 8919 0 1534 189 31 134 chr11 81014299 81014406 -69769147 + LTR9 LTR ERV1 1 117 -495 1544 125 0 5 chr11 81014406 81014614 -69768939 + AluSx SINE Alu 1 207 -105 1534 189 31 134 chr11 81014614 81015239 -69768314 + LTR9 LTR ERV1 117 612 0 11750 189 15 12 chr11 81015239 81015482 -69768071 + L1PA15 LINE L1 3609 3850 -2947 1830 171 0 0 chr11 81015482 81015769 -69767784 + AluJb SINE Alu 11 297 -15 11750 189 15 12 chr11 81015769 81017925 -69765628 + L1PA15 LINE L1 3850 6014 -783 30070 44 3 0 chr11 81017928 81024056 -69759497 + L1PA4 LINE L1 2 6154 -1 5240 119 1 39 chr11 81024089 81024896 -69758657 + L1PA15 LINE L1 6003 6778 -38 1772 149 109 46 chr11 81024896 81025245 -69758308 - THE1C LTR MaLR -4 371 1 5240 119 1 39 chr11 81025245 81025276 -69758277 + L1PA15 LINE L1 6778 6809 -7 19566 145 45 24 chr11 81025469 81030453 -69753100 + L1MA2 LINE L1 6 4887 -2836 1665 100 0 4 chr11 81030453 81030684 -69752869 + AluSq SINE Alu 83 312 -1 19566 145 45 24 chr11 81030684 81030790 -69752763 + L1MA2 LINE L1 4887 4989 -2734 2378 91 3 0 chr11 81030790 81031087 -69752466 + AluSp SINE Alu 1 298 -15 19566 145 45 24 chr11 81031087 81033414 -69750139 + L1MA2 LINE L1 4989 7572 -151 533 108 0 0 chr11 81033414 81033485 -69750068 + L1MA1 LINE L1 6226 6299 -3 787 306 29 71 chr11 81033508 81033911 -69749642 + L1ME3 LINE L1 5440 5818 -344 2349 90 0 0 chr11 81033911 81034210 -69749343 + AluY SINE Alu 1 299 -12 787 306 29 71 chr11 81034210 81034329 -69749224 + L1ME3 LINE L1 5818 5940 -222 22 0 0 0 chr11 81034616 81034638 -69748915 + AT_rich Low_complexity Low_complexity 1 22 0 800 160 7 21 chr11 81034824 81034968 -69748585 + FRAM SINE Alu 24 165 -11 400 265 95 85 chr11 81035237 81035520 -69748033 + L1M4 LINE L1 2335 2620 -3526 742 170 126 0 chr11 81035555 81035690 -69747863 - AluJo/FRAM SINE Alu -14 288 137 804 182 94 29 chr11 81035693 81035863 -69747690 - AluJo SINE Alu -15 297 117 1652 226 106 35 chr11 81035869 81036377 -69747176 + LTR50 LTR ERVL 35 578 -217 721 272 93 4 chr11 81036378 81036657 -69746896 + L1M4 LINE L1 3504 3807 -2339 580 243 97 11 chr11 81037030 81037215 -69746338 + MIR SINE MIR 56 256 -6 372 320 0 19 chr11 81037460 81037563 -69745990 - MIR SINE MIR -75 133 33 510 289 178 5 chr11 81038644 81038852 -69744701 - MIR SINE MIR -6 256 13 222 302 27 60 chr11 81040372 81040521 -69743032 + MIR SINE MIR 4 149 -59 531 280 142 76 chr11 81040553 81040842 -69742711 + L3 LINE CR1 748 1055 -522 322 357 68 24 chr11 81041011 81041305 -69742248 - L2 LINE L2 -412 2902 2596 190 312 71 29 chr11 81041555 81041725 -69741828 - L2 LINE L2 -1122 2192 2016 913 157 0 0 chr11 81041732 81041866 -69741687 - FLAM_C SINE Alu -9 134 1 797 178 0 8 chr11 81042064 81042193 -69741360 - FLAM_A SINE Alu -2 131 4 284 313 135 53 chr11 81042306 81042661 -69740892 + L1MEd LINE L1 209 592 -5527 302 320 41 48 chr11 81042709 81042856 -69740697 + L1ME LINE L1 41 186 -5884 254 314 29 0 chr11 81043133 81043235 -69740318 + ERVL LTR ERVL 1686 1790 -3974 879 192 6 0 chr11 81043240 81043407 -69740146 - MER3 DNA MER1_type -87 122 2 2867 281 121 110 chr11 81043408 81044463 -69739090 + ERVL LTR ERVL 1965 3007 -2757 2270 114 0 3 chr11 81044463 81044771 -69738782 - AluSx SINE Alu -1 311 5 2867 281 121 110 chr11 81044771 81044992 -69738561 + ERVL LTR ERVL 3007 3224 -2540 476 250 23 8 chr11 81044992 81045124 -69738429 - MER94 DNA DNA 0 134 1 2867 281 121 110 chr11 81045124 81046175 -69737378 + ERVL LTR ERVL 3224 4450 -1314 9783 157 38 37 chr11 81046175 81048025 -69735528 - L1M4c LINE L1 -4514 1870 19 1751 296 37 22 chr11 81048126 81048767 -69734786 + ERVL LTR ERVL 4748 5398 -366 243 0 0 0 chr11 81048790 81048817 -69734736 + (TG)n Simple_repeat Simple_repeat 1 27 0 345 294 64 32 chr11 81049109 81049327 -69734226 + LTR50 LTR ERVL 2 226 -569 835 169 41 102 chr11 81049625 81049920 -69733633 + L1MC5 LINE L1 7661 7937 -24 241 237 0 0 chr11 81049972 81050031 -69733522 + LTR33A LTR ERVL 460 518 -5 21 0 0 0 chr11 81050497 81050518 -69733035 + AT_rich Low_complexity Low_complexity 1 21 0 713 219 11 22 chr11 81050601 81050779 -69732774 + MLT1K LTR MaLR 410 585 -3 1078 240 24 8 chr11 81051073 81051327 -69732226 + MIR SINE MIR 3 260 -2 184 374 114 8 chr11 81052091 81052222 -69731331 + L2 LINE L2 2922 3066 -206 185 194 28 0 chr11 81052304 81052340 -69731213 + MIR SINE MIR 198 234 -28 * 188 143 0 0 chr11 81052314 81052342 -69731211 + L2 LINE L2 3213 3240 -32 180 230 135 40 chr11 81052348 81052422 -69731131 + MIR SINE MIR 23 103 -105 * 228 329 0 0 chr11 81052402 81052472 -69731081 + L2 LINE L2 3198 3267 -5 2336 99 0 0 chr11 81052479 81052781 -69730772 + AluY SINE Alu 10 311 0 291 211 173 0 chr11 81053237 81053323 -69730230 + MIR SINE MIR 45 149 -66 418 359 37 28 chr11 81053551 81053768 -69729785 - L2 LINE L2 -183 3089 2871 426 385 45 16 chr11 81054025 81054269 -69729284 + L2 LINE L2 2644 2894 -420 1389 144 48 48 chr11 81054333 81054603 -69728950 - AluJo SINE Alu -11 301 32 2568 37 3 0 chr11 81054703 81054999 -69728554 + AluY SINE Alu 3 299 -12 885 114 34 165 chr11 81055012 81055059 -69728494 + MER58B DNA MER1_type 135 187 -2233 2024 125 14 0 chr11 81055059 81055347 -69728206 + AluSx SINE Alu 1 292 -20 885 114 34 165 chr11 81055347 81055535 -69728018 + MER58B DNA MER1_type 187 339 -2 246 293 91 0 chr11 81055657 81055756 -69727797 - MIR SINE MIR -68 140 33 550 296 75 35 chr11 81058054 81058280 -69725273 - MIR SINE MIR -2 260 26 472 262 96 14 chr11 81058354 81058638 -69724915 - L1MC4a LINE L1 -76 6045 5734 494 318 109 22 chr11 81059279 81059553 -69724000 - L1MC4a LINE L1 -2155 5653 5356 317 286 28 67 chr11 81059714 81059969 -69723584 + L2 LINE L2 2462 2706 -608 320 326 65 79 chr11 81060123 81060463 -69723090 + L2 LINE L2 2932 3266 -6 1810 173 0 10 chr11 81061303 81061615 -69721938 - AluJb SINE Alu -3 309 1 252 0 0 0 chr11 81061640 81061668 -69721885 + (TG)n Simple_repeat Simple_repeat 2 29 0 862 280 107 26 chr11 81061798 81061843 -69721710 - L1ME3 LINE L1 -296 5866 5826 2237 128 0 0 chr11 81061843 81062141 -69721412 - AluSx SINE Alu -14 298 1 862 280 107 26 chr11 81062141 81062743 -69720810 - L1ME3 LINE L1 -336 5826 5154 468 239 65 128 chr11 81062783 81063089 -69720464 + L2 LINE L2 2986 3272 0 195 42 0 0 chr11 81063768 81063792 -69719761 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2012 109 7 4 chr11 81063797 81064073 -69719480 - AluSg1 SINE Alu -32 277 1 389 20 20 0 chr11 81064505 81064555 -69718998 + (TTCA)n Simple_repeat Simple_repeat 2 52 0 407 251 52 91 chr11 81064561 81064792 -69718761 - MIR SINE MIR -30 232 11 356 351 41 63 chr11 81064881 81065149 -69718404 - L2 LINE L2 -15 3257 2996 252 306 99 16 chr11 81065229 81065350 -69718203 - L2 LINE L2 -470 2844 2714 774 308 71 28 chr11 81065538 81065960 -69717593 + MLT1L LTR MaLR 119 558 -57 533 305 78 35 chr11 81065967 81066311 -69717242 - L2 LINE L2 -684 2630 2272 533 264 22 71 chr11 81067040 81067222 -69716331 + MIR SINE MIR 11 183 -79 215 296 61 31 chr11 81067756 81067854 -69715699 - MIR SINE MIR -71 191 91 510 309 33 29 chr11 81068252 81068462 -69715091 + L2 LINE L2 3098 3308 -5 22 80 0 0 chr11 81068582 81068632 -69714921 + AT_rich Low_complexity Low_complexity 1 50 0 394 89 0 0 chr11 81068990 81069046 -69714507 - L1MC4a LINE L1 -613 7195 7140 1970 168 10 48 chr11 81069046 81069438 -69714115 + MLT2C1 LTR ERVL 1 377 -20 2373 187 80 20 chr11 81069473 81069591 -69713962 - L1MC4a LINE L1 -663 7145 7035 2247 117 0 0 chr11 81069591 81069889 -69713664 + AluSx SINE Alu 1 298 -14 2373 187 80 20 chr11 81069889 81070352 -69713201 - L1MC4a LINE L1 -773 7035 6592 393 138 0 0 chr11 81070352 81070432 -69713121 + (GA)n Simple_repeat Simple_repeat 1 80 0 670 230 170 5 chr11 81071640 81071840 -69711713 + MIR SINE MIR 20 252 -10 182 299 154 60 chr11 81071952 81072303 -69711250 - L2 LINE L2 -337 2977 2594 213 296 0 14 chr11 81072323 81072394 -69711159 + GA-rich Low_complexity Low_complexity 2 71 0 956 191 77 10 chr11 81072434 81072628 -69710925 + AluJb SINE Alu 86 292 -20 319 254 27 55 chr11 81072988 81073098 -69710455 + MER96 DNA MER1_type? 1 107 -68 759 256 105 0 chr11 81073130 81073321 -69710232 + MIR SINE MIR 23 233 -29 748 278 88 29 chr11 81073955 81074044 -69709509 - MER102b DNA MER1_type -1088 340 258 285 29 0 0 chr11 81074044 81074078 -69709475 + (TG)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr11 81074079 81074099 -69709454 + (GA)n Simple_repeat Simple_repeat 2 21 0 748 278 88 29 chr11 81074099 81074313 -69709240 - MER102b DNA MER1_type -1169 259 17 1704 162 0 22 chr11 81074314 81074592 -69708961 - AluJb SINE Alu -1 311 40 220 294 44 88 chr11 81074876 81075012 -69708541 + L2 LINE L2 3143 3272 0 212 333 0 0 chr11 81075191 81075248 -69708305 + L2 LINE L2 3172 3228 -44 336 273 67 48 chr11 81075786 81075995 -69707558 + L1M4 LINE L1 5041 5253 -893 1711 151 72 3 chr11 81076462 81076753 -69706800 - AluJb SINE Alu -1 311 1 2279 141 32 19 chr11 81076780 81077150 -69706403 + THE1C LTR MaLR 1 375 0 248 277 16 125 chr11 81077153 81077259 -69706294 + L2 LINE L2 3100 3179 -93 2428 55 0 0 chr11 81077259 81077548 -69706005 - AluY SINE Alu -9 302 14 248 277 16 125 chr11 81077548 81077625 -69705928 + L2 LINE L2 3179 3263 -9 193 333 0 0 chr11 81077695 81077752 -69705801 - L2 LINE L2 -219 3053 2997 2107 129 0 38 chr11 81077754 81078072 -69705481 + AluSx SINE Alu 1 306 -6 1727 71 53 0 chr11 81078298 81078523 -69705030 - AluSq SINE Alu -76 237 1 410 271 17 8 chr11 81078535 81078653 -69704900 + L2 LINE L2 3187 3305 -8 211 318 191 0 chr11 81078741 81078851 -69704702 + L2 LINE L2 3142 3272 0 182 307 227 0 chr11 81078921 81079009 -69704544 + L2 LINE L2 3163 3270 -2 214 301 10 48 chr11 81079158 81079261 -69704292 + MIR SINE MIR 158 256 -6 399 266 32 70 chr11 81080691 81080849 -69702704 + MIR3 SINE MIR 43 194 -14 1328 195 52 38 chr11 81081071 81081358 -69702195 - AluJo SINE Alu -21 291 1 278 310 74 17 chr11 81081640 81081812 -69701741 + MIR SINE MIR 20 206 -56 2317 83 7 0 chr11 81082039 81082339 -69701214 + AluSp SINE Alu 1 302 -11 259 301 63 15 chr11 81082708 81082735 -69700818 + MIR SINE MIR 45 69 -188 652 75 0 0 chr11 81082735 81082815 -69700738 - MADE1 DNA Mariner 0 80 1 259 301 63 15 chr11 81082815 81082925 -69700628 + MIR SINE MIR 69 189 -68 872 176 0 0 chr11 81082984 81083126 -69700427 - FLAM_C SINE Alu -1 142 1 1935 109 80 0 chr11 81083727 81084002 -69699551 - AluSx SINE Alu -15 297 1 196 269 0 19 chr11 81084621 81084673 -69698880 + MIR3 SINE MIR 151 201 -7 383 308 119 19 chr11 81084730 81084889 -69698664 - MIR3 SINE MIR -30 178 4 208 413 0 0 chr11 81084948 81085023 -69698530 + MIR SINE MIR 24 98 -110 4576 176 45 12 chr11 81085231 81086223 -69697330 + L1MB7 LINE L1 5144 6165 -19 342 0 0 0 chr11 81086361 81086399 -69697154 + (TA)n Simple_repeat Simple_repeat 2 39 0 2490 277 132 23 chr11 81086450 81087702 -69695851 + L2 LINE L2 1901 3308 -5 22 35 0 0 chr11 81087733 81087762 -69695791 + AT_rich Low_complexity Low_complexity 1 29 0 323 312 170 47 chr11 81089145 81089575 -69693978 + L2 LINE L2 2379 2861 -453 1662 173 3 39 chr11 81089903 81090215 -69693338 - AluJo SINE Alu -11 301 1 1902 117 4 4 chr11 81090593 81090850 -69692703 + AluSx SINE Alu 34 290 -22 638 284 69 5 chr11 81091188 81091392 -69692161 + MIR SINE MIR 46 262 0 186 250 280 20 chr11 81091581 81091681 -69691872 - L2 LINE L2 -50 3263 3138 633 266 31 44 chr11 81091704 81091933 -69691620 - MIR SINE MIR -3 259 34 1826 135 48 10 chr11 81092027 81092341 -69691212 - AluSx SINE Alu 0 312 1 182 250 217 0 chr11 81092514 81092574 -69690979 + MIR SINE MIR 63 135 -127 979 200 27 64 chr11 81092718 81092938 -69690615 - MER68 LTR ERV1 -350 212 1 696 194 0 16 chr11 81094045 81094214 -69689339 - FLAM_A SINE Alu 0 142 8 601 233 80 7 chr11 81094593 81094743 -69688810 - L1MC/D LINE L1 -2021 5787 5627 282 89 133 0 chr11 81095357 81095402 -69688151 - MER66B LTR ERV1 -141 345 295 736 0 0 73 chr11 81095804 81095900 -69687653 + L1PA4 LINE L1 6067 6155 0 186 250 0 0 chr11 81095950 81095990 -69687563 + L3b LINE CR1 1198 1237 -346 602 304 99 42 chr11 81097211 81097271 -69686282 + MARNA DNA Mariner 92 147 -439 1532 186 77 3 chr11 81097271 81097556 -69685997 - AluJo SINE Alu -6 306 1 602 304 99 42 chr11 81097556 81097900 -69685653 + MARNA DNA Mariner 147 519 -67 298 283 124 28 chr11 81097780 81097925 -69685628 - MARNA DNA Mariner -396 190 32 * 1843 161 7 0 chr11 81097983 81098274 -69685279 + AluSx SINE Alu 2 294 -18 1142 158 23 0 chr11 81098287 81098458 -69685095 + AluJb SINE Alu 118 292 -20 257 325 139 18 chr11 81098493 81098659 -69684894 - MIR SINE MIR -74 188 3 729 92 31 0 chr11 81098709 81098807 -69684746 - U6 snRNA snRNA -6 101 1 1729 145 3 99 chr11 81098824 81099024 -69684529 - AluSx SINE Alu 0 312 157 2171 111 3 32 chr11 81099024 81099339 -69684214 - AluSx SINE Alu -6 306 1 1729 145 3 99 chr11 81099339 81099483 -69684070 - AluSx SINE Alu -155 157 1 183 363 12 0 chr11 81099487 81099567 -69683986 + MIR SINE MIR 175 255 -7 237 358 0 0 chr11 81100695 81100776 -69682777 + MIR SINE MIR 45 125 -83 281 323 19 2 chr11 81100826 81101004 -69682549 - MIR SINE MIR 0 262 45 2941 157 78 47 chr11 81101354 81101999 -69681554 - L1MB8 LINE L1 0 6178 5514 1945 116 14 7 chr11 81102601 81102893 -69680660 - AluSq SINE Alu -19 294 1 205 283 81 30 chr11 81103156 81103255 -69680298 + L2 LINE L2 244 347 -2967 31 26 0 0 chr11 81103395 81103433 -69680120 + AT_rich Low_complexity Low_complexity 1 38 0 901 37 0 0 chr11 81103469 81103577 -69679976 + L1HS LINE L1 5866 5973 -182 2734 247 387 19 chr11 81103577 81105138 -69678415 + L2 LINE L2 335 1321 -1992 2406 92 0 0 chr11 81105138 81105442 -69678111 - AluY SINE Alu -7 304 1 2734 247 387 19 chr11 81105442 81106031 -69677522 + L2 LINE L2 1321 3312 -1 1053 187 120 8 chr11 81108417 81108661 -69674892 - MIR SINE MIR 0 262 1 1404 113 29 0 chr11 81109015 81109219 -69674334 + MER2 DNA MER2_type 1 210 -135 37 23 0 0 chr11 81109219 81109263 -69674290 + AT_rich Low_complexity Low_complexity 1 44 0 2264 97 7 3 chr11 81109553 81109852 -69673701 + AluSq SINE Alu 1 300 -13 198 337 101 11 chr11 81110117 81110206 -69673347 + MIR SINE MIR 34 130 -78 283 51 26 0 chr11 81111179 81111218 -69672335 - Charlie4 DNA MER1_type -53 1908 1869 820 280 34 13 chr11 81111224 81111460 -69672093 + HERVL40 LTR ERVL 170 410 -5120 1191 199 29 107 chr11 81111496 81111842 -69671711 + HERVL40 LTR ERVL 415 733 -4797 1054 206 71 43 chr11 81111842 81112253 -69671300 + LTR40a LTR ERVL 3 500 -2 305 263 70 26 chr11 81112256 81112370 -69671183 + HERVL40 LTR ERVL 1 119 -5411 283 219 96 0 chr11 81112700 81112773 -69670780 + HERVL40 LTR ERVL 1098 1177 -4353 313 234 80 58 chr11 81112880 81113017 -69670536 - LTR40c LTR ERVL -325 140 1 280 225 28 28 chr11 81113615 81113686 -69669867 + HERVL40 LTR ERVL 19 89 -5441 275 210 65 0 chr11 81113688 81113750 -69669803 + HERVL40 LTR ERVL 1422 1487 -4043 315 292 90 54 chr11 81114090 81114367 -69669186 + HERVL40 LTR ERVL 4387 4673 -350 * 923 254 60 34 chr11 81114344 81114683 -69668870 + HERVL40 LTR ERVL 2785 5530 0 1799 196 154 10 chr11 81114684 81115087 -69668466 + LTR40b LTR ERVL 2 462 0 223 324 95 56 chr11 81115267 81115446 -69668107 - L2 LINE L2 -100 3172 2987 * 451 204 46 9 chr11 81115443 81115551 -69668002 - MIR SINE MIR -119 143 32 223 218 18 0 chr11 81115929 81115984 -69667569 + (TA)n Simple_repeat Simple_repeat 2 57 0 22 0 0 0 chr11 81115986 81116008 -69667545 + AT_rich Low_complexity Low_complexity 1 22 0 495 263 113 30 chr11 81116045 81116082 -69667471 - L1ME3A LINE L1 -216 5948 5915 1702 222 97 40 chr11 81116082 81116610 -69666943 - MER68 LTR ERV1 -4 558 1 495 263 113 30 chr11 81116610 81116948 -69666605 - L1ME3A LINE L1 -249 5915 5526 433 304 27 5 chr11 81117203 81117427 -69666126 - L1ME3A LINE L1 -2898 3248 3020 376 278 60 0 chr11 81117427 81117560 -69665993 - LTR16C LTR ERVL -1 490 350 1091 220 144 75 chr11 81117566 81118061 -69665492 - L1MC5 LINE L1 -733 7228 6751 2525 59 0 0 chr11 81118061 81118366 -69665187 + AluY SINE Alu 2 306 -5 1091 220 144 75 chr11 81118366 81118419 -69665134 - L1MC5 LINE L1 -1210 6751 6703 180 0 0 0 chr11 81118419 81118439 -69665114 + (T)n Simple_repeat Simple_repeat 1 20 0 509 204 53 0 chr11 81118461 81118574 -69664979 - L1MC4a LINE L1 -934 6874 6756 823 199 0 0 chr11 81118704 81118855 -69664698 - FRAM SINE Alu -25 151 1 218 246 18 0 chr11 81118989 81119046 -69664507 + (TA)n Simple_repeat Simple_repeat 2 59 0 334 268 57 57 chr11 81119947 81120104 -69663449 + MIR3 SINE MIR 17 173 -35 212 151 0 94 chr11 81120101 81120154 -69663399 + L2 LINE L2 3266 3313 0 * 347 201 326 0 chr11 81120245 81120356 -69663197 - MIR SINE MIR -62 146 20 372 321 66 0 chr11 81120699 81120836 -69662717 - MIR SINE MIR -79 183 38 2150 120 0 10 chr11 81120881 81121181 -69662372 - AluSx SINE Alu -15 297 1 356 269 179 13 chr11 81121595 81121751 -69661802 - MIR SINE MIR 0 262 81 283 359 83 31 chr11 81122177 81122470 -69661083 + L2 LINE L2 2709 3022 -250 833 257 156 9 chr11 81122477 81122792 -69660761 - L2 LINE L2 0 3313 2953 485 303 69 7 chr11 81122938 81123083 -69660470 + L2 LINE L2 3115 3268 -4 516 134 80 36 chr11 81123293 81123320 -69660233 + L1MEd LINE L1 69 93 -6026 2310 92 3 3 chr11 81123320 81123623 -69659930 + AluSq SINE Alu 1 303 -10 516 134 80 36 chr11 81123623 81123707 -69659846 + L1MEd LINE L1 93 185 -5934 2422 80 0 3 chr11 81123842 81124143 -69659410 - AluY SINE Alu -11 300 1 2569 125 82 0 chr11 81124257 81124648 -69658905 - MSTC LTR MaLR 0 428 6 426 307 13 27 chr11 81124783 81124933 -69658620 + L1MEd LINE L1 520 667 -5452 589 253 25 19 chr11 81125535 81125697 -69657856 - MIR SINE MIR -72 190 28 335 298 50 14 chr11 81125730 81125871 -69657682 - MIR SINE MIR -52 210 65 349 234 72 0 chr11 81125912 81126023 -69657530 - MIR SINE MIR -94 168 50 13921 117 71 27 chr11 81126121 81126428 -69657125 - Tigger1 DNA MER2_type -1 2417 2125 252 0 0 0 chr11 81126428 81126456 -69657097 + (TTA)n Simple_repeat Simple_repeat 2 29 0 13921 117 71 27 chr11 81126456 81126508 -69657045 - Tigger1 DNA MER2_type -293 2125 2077 1731 167 4 4 chr11 81126508 81126789 -69656764 + AluJo SINE Alu 1 281 -31 13921 117 71 27 chr11 81126789 81128200 -69655353 - Tigger1 DNA MER2_type -341 2077 518 2235 80 0 64 chr11 81128200 81128514 -69655039 + AluSg SINE Alu 1 294 -16 13921 117 71 27 chr11 81128514 81129055 -69654498 - Tigger1 DNA MER2_type -1900 518 2 685 167 38 38 chr11 81129617 81129749 -69653804 - FLAM_A SINE Alu -1 132 1 213 39 0 0 chr11 81129763 81129789 -69653764 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 920 176 0 12 chr11 81129789 81129947 -69653606 - FAM SINE Alu -153 158 1 267 214 262 8 chr11 81130151 81130277 -69653276 + MIR SINE MIR 12 169 -93 876 316 51 53 chr11 81130374 81130845 -69652708 - L3 LINE CR1 -212 1365 896 2519 112 28 0 chr11 81130868 81131262 -69652291 - L1MB2 LINE L1 -5 6166 5762 1158 135 124 0 chr11 81131262 81131413 -69652140 - AluJo SINE Alu -18 294 115 423 0 0 0 chr11 81131413 81131460 -69652093 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1158 135 124 0 chr11 81131460 81131493 -69652060 - AluJo SINE Alu -197 115 87 2014 199 15 8 chr11 81131493 81131890 -69651663 - L1MB2 LINE L1 -405 5766 5367 2253 118 6 10 chr11 81131910 81132223 -69651330 - AluSx SINE Alu 0 312 1 245 359 15 0 chr11 81132277 81132408 -69651145 - L3 LINE CR1 -759 818 686 334 290 65 36 chr11 81132547 81132685 -69650868 + L3 LINE CR1 1406 1547 -30 950 196 72 60 chr11 81132698 81132933 -69650620 - AluJo SINE Alu -14 298 61 26 0 0 0 chr11 81132990 81133016 -69650537 + AT_rich Low_complexity Low_complexity 1 26 0 1473 227 116 57 chr11 81133251 81133793 -69649760 - L1ME3A LINE L1 -38 6132 5559 1444 212 142 82 chr11 81134157 81134248 -69649305 - L1MC4a LINE L1 -1870 5938 5854 2155 116 7 0 chr11 81134248 81134541 -69649012 + AluSx SINE Alu 1 295 -17 1444 212 142 82 chr11 81134541 81134927 -69648626 - L1MC4a LINE L1 -1954 5854 5409 693 129 147 0 chr11 81134927 81135043 -69648510 - FLAM_C SINE Alu 0 133 1 1444 212 142 82 chr11 81135043 81135210 -69648343 - L1MC4a LINE L1 -2399 5409 5254 417 283 84 18 chr11 81135241 81135407 -69648146 - MIR SINE MIR -63 199 23 338 141 0 16 chr11 81135525 81135589 -69647964 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 344 270 63 0 chr11 81135747 81135858 -69647695 - L2 LINE L2 -219 3053 2936 539 248 15 7 chr11 81137297 81137434 -69646119 + MIR SINE MIR 16 153 -55 184 179 26 26 chr11 81137966 81138005 -69645548 - L2 LINE L2 -89 3183 3145 2360 97 0 3 chr11 81139195 81139494 -69644059 - AluSg SINE Alu -12 298 1 345 289 61 18 chr11 81140912 81141026 -69642527 + L2 LINE L2 3154 3272 0 301 199 3 28 chr11 81142110 81142173 -69641380 + Alu SINE Alu 1 50 -252 335 243 14 50 chr11 81143726 81143866 -69639687 + MIR3 SINE MIR 11 145 -63 211 314 0 14 chr11 81144422 81144492 -69639061 - MIR SINE MIR -123 139 71 252 271 71 0 chr11 81145114 81145199 -69638354 - MIR SINE MIR -76 186 96 1943 128 47 7 chr11 81145236 81145533 -69638020 + AluJb SINE Alu 1 309 -3 1778 184 31 28 chr11 81145698 81146057 -69637496 + MLT1A1 LTR MaLR 5 364 -1 582 199 0 144 chr11 81146072 81146273 -69637280 - MER5A DNA MER1_type -9 180 9 332 278 160 7 chr11 81148040 81148184 -69635369 + MER91A DNA MER1_type 1 166 -30 271 225 78 49 chr11 81148720 81148862 -69634691 + MIR SINE MIR 67 212 -50 3271 78 23 5 chr11 81148913 81149349 -69634204 + MLT2A1 LTR ERVL 1 444 0 11583 80 10 62 chr11 81149349 81151015 -69632538 + THE1B-int LTR MaLR 1 1580 0 2271 124 48 20 chr11 81151015 81151369 -69632184 + THE1B LTR MaLR 1 364 0 401 36 0 18 chr11 81201784 81201840 -69581713 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 1405 191 137 0 chr11 81202375 81202674 -69580879 - MER58B DNA MER1_type 0 341 2 305 271 68 41 chr11 81202804 81202944 -69580609 + L1MC/D LINE L1 4729 4879 -1267 1751 154 7 17 chr11 81202944 81203242 -69580311 + AluSx SINE Alu 1 295 -17 305 271 68 41 chr11 81203242 81203322 -69580231 + L1MC/D LINE L1 4879 4955 -1191 582 174 242 14 chr11 81203457 81203676 -69579877 - MLT1F LTR MaLR 0 542 274 237 207 17 17 chr11 81203826 81203884 -69579669 - MLT1F LTR MaLR -459 83 26 1259 265 47 22 chr11 81203923 81204496 -69579057 + L1MC/D LINE L1 5061 5653 -509 990 166 0 12 chr11 81204544 81204707 -69578846 + FRAM SINE Alu 1 159 -17 274 261 171 11 chr11 81204709 81204797 -69578756 + MER5B DNA MER1_type 65 166 -12 287 296 14 16 chr11 81204797 81204923 -69578630 + L1MC/D LINE L1 5639 5766 -355 690 249 42 5 chr11 81204938 81205151 -69578402 - L1M4c LINE L1 -5195 1189 969 400 91 0 2 chr11 81205158 81205390 -69578163 - AluSc SINE Alu 0 299 28 189 0 0 0 chr11 81205601 81205622 -69577931 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 857 151 65 0 chr11 81205625 81205764 -69577789 - FRAM SINE Alu -30 146 1 21 0 0 0 chr11 81206531 81206552 -69577001 + AT_rich Low_complexity Low_complexity 1 21 0 1536 173 0 4 chr11 81206552 81206830 -69576723 - L1MB1 LINE L1 -1 6167 5891 30 27 0 0 chr11 81207085 81207122 -69576431 + AT_rich Low_complexity Low_complexity 1 37 0 249 246 16 0 chr11 81207167 81207228 -69576325 - L2 LINE L2 -216 3056 2995 293 262 97 62 chr11 81207408 81207553 -69576000 - MIR SINE MIR -6 256 107 1945 149 0 3 chr11 81208104 81208400 -69575153 + AluJo SINE Alu 1 295 -17 781 283 52 17 chr11 81208408 81208698 -69574855 - L1MB1 LINE L1 -2213 5595 5296 344 277 85 62 chr11 81208802 81208979 -69574574 - L1ME4a LINE L1 -293 5828 5648 213 417 31 0 chr11 81209233 81209329 -69574224 - L3 LINE CR1 -1 1576 1478 33 56 0 0 chr11 81210272 81210326 -69573227 + AT_rich Low_complexity Low_complexity 1 54 0 456 282 66 50 chr11 81210522 81210897 -69572656 + L1M4 LINE L1 1256 1746 -4888 3388 75 59 0 chr11 81210908 81211037 -69572516 + L1PA10 LINE L1 5651 5771 -397 213 65 0 0 chr11 81211037 81211068 -69572485 + (TA)n Simple_repeat Simple_repeat 2 32 0 3388 75 59 0 chr11 81211068 81211416 -69572137 + L1PA10 LINE L1 5771 6156 -12 624 274 63 5 chr11 81211695 81211918 -69571635 - L1ME LINE L1 -346 5775 5540 1154 242 106 63 chr11 81211920 81212085 -69571468 + MLT1G1 LTR MaLR 1 157 -398 1890 178 0 0 chr11 81212085 81212389 -69571164 + AluJb SINE Alu 4 307 -5 1154 242 106 63 chr11 81212389 81212739 -69570814 + MLT1G1 LTR MaLR 157 542 -13 959 163 6 17 chr11 81213137 81213309 -69570244 + AluJb SINE Alu 138 307 -5 775 238 183 27 chr11 81213338 81213666 -69569887 - MLT1J2 LTR MaLR -31 419 41 261 173 227 13 chr11 81213684 81213759 -69569794 - MIR SINE MIR -67 141 51 281 350 17 34 chr11 81213852 81213969 -69569584 - MIR3 SINE MIR -79 129 15 21 100 0 0 chr11 81214183 81214253 -69569300 + AT_rich Low_complexity Low_complexity 1 70 0 2073 123 0 7 chr11 81214946 81215239 -69568314 - AluSq SINE Alu -22 291 1 2089 179 49 2 chr11 81215440 81215847 -69567706 + MSTB LTR MaLR 1 426 0 22 35 0 0 chr11 81215894 81215923 -69567630 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr11 81216506 81216535 -69567018 + AT_rich Low_complexity Low_complexity 1 29 0 2348 103 0 6 chr11 81216549 81216861 -69566692 - AluSx SINE Alu -2 310 1 2471 40 7 0 chr11 81217449 81217746 -69565807 + AluY SINE Alu 1 299 -12 246 178 0 0 chr11 81218245 81218290 -69565263 + L1MC4 LINE L1 6659 6703 -1339 422 146 15 39 chr11 81218295 81218425 -69565128 + (TA)n Simple_repeat Simple_repeat 2 128 0 240 309 81 32 chr11 81218550 81218673 -69564880 + MIR SINE MIR 29 157 -105 323 274 131 34 chr11 81218688 81218863 -69564690 - L1ME LINE L1 -411 5710 5519 664 165 29 0 chr11 81219852 81219955 -69563598 + FRAM SINE Alu 1 102 -74 2325 77 0 0 chr11 81220501 81220787 -69562766 + AluSc SINE Alu 3 288 -21 180 0 0 0 chr11 81220808 81220828 -69562725 + (T)n Simple_repeat Simple_repeat 1 20 0 552 100 0 0 chr11 81221812 81221892 -69561661 + MADE1 DNA Mariner 1 80 0 235 247 141 24 chr11 81222062 81222147 -69561406 + L2 LINE L2 3200 3294 -19 29 78 0 0 chr11 81222339 81222403 -69561150 + AT_rich Low_complexity Low_complexity 1 64 0 23 33 0 0 chr11 81223704 81223734 -69559819 + AT_rich Low_complexity Low_complexity 1 30 0 5179 171 17 30 chr11 81224544 81224834 -69558719 - Tigger6a DNA MER2_type -514 1083 791 2055 149 0 0 chr11 81224834 81225130 -69558423 + AluSx SINE Alu 1 296 -16 5179 171 17 30 chr11 81225130 81225936 -69557617 - Tigger6a DNA MER2_type -806 791 1 427 228 89 39 chr11 81225940 81226199 -69557354 + L1M4 LINE L1 2926 3197 -2949 349 154 39 0 chr11 81226807 81226885 -69556668 - LTR33 LTR ERVL -440 81 1 684 269 108 53 chr11 81227018 81227360 -69556193 - L2 LINE L2 -861 2453 2093 1298 281 104 47 chr11 81227563 81228399 -69555154 + L2 LINE L2 2250 3139 -174 584 154 60 51 chr11 81228402 81228507 -69555046 - FRAM SINE Alu -146 166 58 23127 38 12 1 chr11 81228507 81232144 -69551409 - L1PA5 LINE L1 0 6154 2487 584 154 60 51 chr11 81232144 81232155 -69551398 - FRAM SINE Alu -254 58 49 16263 82 7 0 chr11 81232155 81234440 -69549113 - L1PA5 LINE L1 -3826 2320 21 379 209 19 4 chr11 81234440 81234547 -69549006 - FLAM_A SINE Alu -57 75 11 318 98 0 0 chr11 81234556 81234607 -69548946 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 1325 166 46 0 chr11 81234622 81234839 -69548714 - AluJo SINE Alu 0 312 86 290 232 123 58 chr11 81234858 81234996 -69548557 + L2 LINE L2 3155 3301 -12 278 276 43 17 chr11 81235126 81235242 -69548311 - L1MC4a LINE L1 -1836 5972 5854 411 219 0 0 chr11 81235284 81235380 -69548173 + (TA)n Simple_repeat Simple_repeat 1 96 0 192 179 0 0 chr11 81235426 81235465 -69548088 + (TATG)n Simple_repeat Simple_repeat 2 40 0 607 124 0 0 chr11 81235519 81235608 -69547945 + AluJ/FRAM SINE Alu 216 304 -8 311 300 0 9 chr11 81235611 81235721 -69547832 + L1ME LINE L1 5685 5793 -328 225 257 0 29 chr11 81235745 81235815 -69547738 + (TATG)n Simple_repeat Simple_repeat 4 71 0 332 152 76 95 chr11 81235825 81235930 -69547623 + Charlie5 DNA MER1_type 2483 2585 -27 2281 121 0 0 chr11 81235967 81236274 -69547279 - AluSx SINE Alu -4 308 2 556 278 148 4 chr11 81236275 81236538 -69547015 - L1MC4a LINE L1 -2171 5637 5337 5941 135 76 11 chr11 81236546 81237733 -69545820 - L1MC1 LINE L1 0 6316 5066 2238 91 0 48 chr11 81237733 81238042 -69545511 + AluSq SINE Alu 1 294 -19 5941 135 76 11 chr11 81238042 81238108 -69545445 - L1MC1 LINE L1 -1250 5066 5006 273 295 16 8 chr11 81238298 81238420 -69545133 - L1MC1 LINE L1 -1537 4592 4470 2450 49 10 13 chr11 81239302 81239610 -69543943 - AluY SINE Alu -4 307 1 314 369 0 0 chr11 81239662 81239830 -69543723 + (CCA)n Simple_repeat Simple_repeat 1 168 0 376 266 111 44 chr11 81240595 81240887 -69542666 - MLT1J LTR MaLR 0 511 229 4949 68 6 8 chr11 81240993 81241623 -69541930 + SVA Other Other 753 1381 -5 528 267 31 12 chr11 81241909 81242070 -69541483 - L1MC1 LINE L1 -5659 460 297 455 301 27 6 chr11 81242127 81242310 -69541243 - L1MC1 LINE L1 -5914 205 19 230 271 47 47 chr11 81242369 81242454 -69541099 + L3 LINE CR1 1486 1570 -7 2482 78 0 0 chr11 81242970 81243278 -69540275 - AluY SINE Alu -3 308 1 1732 161 9 12 chr11 81243677 81244012 -69539541 + L1MB8 LINE L1 5699 6032 -146 354 45 0 0 chr11 81244016 81244060 -69539493 + (TC)n Simple_repeat Simple_repeat 1 44 0 2236 125 0 0 chr11 81244060 81244364 -69539189 - AluSq SINE Alu -9 304 1 870 145 0 7 chr11 81244366 81244518 -69539035 + L1MB8 LINE L1 6028 6178 0 300 283 117 94 chr11 81244912 81245262 -69538291 + L1MC4a LINE L1 6217 6574 -1234 1111 201 21 122 chr11 81245311 81245927 -69537626 + L1MC5 LINE L1 6675 7228 -733 830 235 60 35 chr11 81246067 81246467 -69537086 + L1MC5 LINE L1 7289 7698 -263 28 48 0 0 chr11 81246612 81246654 -69536899 + AT_rich Low_complexity Low_complexity 1 42 0 608 306 224 21 chr11 81246741 81247276 -69536277 - L2 LINE L2 -1684 1630 987 196 284 15 30 chr11 81247281 81247348 -69536205 - L2 LINE L2 -665 2649 2584 32 26 0 0 chr11 81247812 81247851 -69535702 + AT_rich Low_complexity Low_complexity 1 39 0 382 273 26 120 chr11 81248301 81248609 -69534944 - L1ME4a LINE L1 -48 6073 5795 2194 102 3 16 chr11 81248662 81248966 -69534587 - AluSp SINE Alu -3 310 11 191 347 41 58 chr11 81250728 81250849 -69532704 + MIR SINE MIR 5 123 -139 2171 131 7 0 chr11 81250884 81251189 -69532364 + AluSg SINE Alu 1 307 -3 2473 61 0 0 chr11 81251406 81251717 -69531836 - AluY SINE Alu 0 311 1 326 229 271 0 chr11 81251733 81251829 -69531724 + MER5A DNA MER1_type 67 188 -1 374 291 35 40 chr11 81251850 81252049 -69531504 + L2 LINE L2 3116 3313 0 180 0 0 0 chr11 81253452 81253472 -69530081 + (CCG)n Simple_repeat Simple_repeat 2 21 0 206 78 0 118 chr11 81253472 81253523 -69530030 + (CCCCG)n Simple_repeat Simple_repeat 4 48 0 477 63 0 158 chr11 81254237 81254332 -69529221 - MADE1 DNA Mariner 0 80 1 182 294 82 0 chr11 81254655 81254740 -69528813 + MIR SINE MIR 84 175 -87 220 327 0 0 chr11 81255052 81255107 -69528446 - L2 LINE L2 -17 3296 3242 305 319 21 0 chr11 81255351 81255445 -69528108 - MER5A DNA MER1_type -35 154 59 299 366 0 10 chr11 81255467 81255568 -69527985 + MER5A DNA MER1_type 10 109 -80 238 114 0 0 chr11 81255930 81255965 -69527588 - MER53 DNA DNA -152 37 3 2136 122 88 26 chr11 81256011 81256359 -69527194 - Tigger3(Golem) DNA MER2_type 0 3028 2652 182 37 37 0 chr11 81256359 81256386 -69527167 + (TGAG)n Simple_repeat Simple_repeat 1 28 0 2136 122 88 26 chr11 81256386 81256422 -69527131 - Tigger3(Golem) DNA MER2_type -376 2652 2620 1531 122 4 38 chr11 81256540 81256777 -69526776 - AluJo SINE Alu -83 229 1 1898 135 3 64 chr11 81257040 81257367 -69526186 + AluSx SINE Alu 1 307 -5 28 0 0 0 chr11 81257581 81257609 -69525944 + AT_rich Low_complexity Low_complexity 1 28 0 582 297 31 26 chr11 81259632 81259827 -69523726 - MIR SINE MIR -64 198 3 2414 41 3 3 chr11 81259907 81260201 -69523352 + AluY SINE Alu 1 294 -17 249 283 58 66 chr11 81260453 81260711 -69522842 - HAL1 LINE L1 -1 2506 2251 381 162 0 0 chr11 81260920 81260988 -69522565 + L1MB2 LINE L1 5920 5987 -184 233 159 72 14 chr11 81261143 81261212 -69522341 + HAL1 LINE L1 1006 1078 -1429 257 208 14 0 chr11 81261533 81261605 -69521948 + GA-rich Low_complexity Low_complexity 3 75 0 1444 120 37 0 chr11 81261720 81261961 -69521592 - L1MB2 LINE L1 -101 6070 5821 321 313 194 0 chr11 81262054 81262198 -69521355 - HAL1 LINE L1 -2335 172 1 655 162 47 115 chr11 81262235 81262464 -69521089 + L1MC3 LINE L1 5726 5942 -402 2456 41 0 51 chr11 81262610 81262925 -69520628 - AluY SINE Alu -12 299 1 2545 75 7 0 chr11 81263161 81263466 -69520087 + AluSg SINE Alu 1 307 -3 319 228 207 7 chr11 81264873 81265018 -69518535 - MER21B LTR ERV1 -361 502 329 1933 189 22 40 chr11 81265141 81265514 -69518039 + MER41B LTR ERV1 163 528 -107 2325 122 0 0 chr11 81265514 81265825 -69517728 - AluSx SINE Alu 0 312 2 1933 189 22 40 chr11 81265825 81265896 -69517657 + MER41B LTR ERV1 528 599 -36 209 244 23 81 chr11 81266961 81267047 -69516506 - MIR SINE MIR -41 221 141 668 299 104 32 chr11 81267129 81267504 -69516049 - L2 LINE L2 -18 3254 2853 317 354 61 6 chr11 81267525 81267706 -69515847 - L2 LINE L2 -653 2661 2471 409 263 263 9 chr11 81267790 81268007 -69515546 - Charlie7 DNA MER1_type -2335 277 6 273 271 209 8 chr11 81268051 81268180 -69515373 + MIR SINE MIR 28 182 -80 1413 130 41 8 chr11 81268307 81268553 -69515000 - L1MB2 LINE L1 -2 6169 5916 3143 154 21 30 chr11 81268802 81269426 -69514127 - L1MB8 LINE L1 -9 6169 5552 600 250 67 67 chr11 81269673 81270001 -69513552 - MARNA DNA Mariner -127 459 132 2332 92 0 3 chr11 81271816 81272110 -69511443 + AluSg SINE Alu 1 293 -17 901 194 19 0 chr11 81272169 81272329 -69511224 + FRAM SINE Alu 1 163 -13 23 33 0 0 chr11 81272481 81272511 -69511042 + AT_rich Low_complexity Low_complexity 1 30 0 396 244 60 127 chr11 81273704 81274003 -69509550 + L3b LINE CR1 1108 1386 -197 21 0 0 0 chr11 81274053 81274074 -69509479 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 81275594 81275622 -69507931 + AT_rich Low_complexity Low_complexity 1 28 0 2387 87 3 0 chr11 81275776 81276074 -69507479 + AluSp SINE Alu 1 299 -14 189 329 71 0 chr11 81276217 81276287 -69507266 + L2 LINE L2 3163 3237 -35 338 253 38 0 chr11 81277624 81277703 -69505850 + L2 LINE L2 3231 3312 -1 378 0 0 0 chr11 81278073 81278115 -69505438 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 10221 69 16 6 chr11 81278187 81279509 -69504044 - SVA Other Other 0 1386 52 221 0 0 33 chr11 81279510 81279540 -69504013 + (GGGAGA)n Simple_repeat Simple_repeat 1 29 0 248 279 116 48 chr11 81279930 81280077 -69503476 - LTR67 LTR ERVL -288 269 113 318 317 191 10 chr11 81280456 81280655 -69502898 - L3 LINE CR1 -9 1568 1334 239 314 97 66 chr11 81280967 81281193 -69502360 + L2 LINE L2 3001 3233 -39 1512 176 77 35 chr11 81281455 81281768 -69501785 - MLT1F LTR MaLR -216 326 1 860 241 55 47 chr11 81281770 81281948 -69501605 - L2 LINE L2 -942 2372 2190 2518 60 0 3 chr11 81281948 81282247 -69501306 + AluY SINE Alu 1 298 -13 860 241 55 47 chr11 81282247 81282321 -69501232 - L2 LINE L2 -1124 2190 2118 234 274 104 7 chr11 81282354 81282489 -69501064 - L1MC5 LINE L1 -32 7929 7782 2124 241 63 19 chr11 81282549 81283072 -69500481 - MLT1H LTR MaLR -3 546 1 269 295 113 77 chr11 81283072 81283353 -69500200 - MLT1H-int LTR MaLR 0 1371 1075 1724 124 95 7 chr11 81283353 81283636 -69499917 + AluSx SINE Alu 2 309 -3 269 295 113 77 chr11 81283636 81283690 -69499863 - MLT1H-int LTR MaLR -296 1075 1024 1862 253 116 4 chr11 81284259 81284742 -69498811 - MLT1H LTR MaLR 0 549 13 298 311 148 16 chr11 81285014 81285258 -69498295 + L2 LINE L2 2585 2860 -454 274 234 146 76 chr11 81285350 81285508 -69498045 + L2 LINE L2 3104 3272 0 297 314 69 0 chr11 81285968 81286085 -69497468 - MIR SINE MIR -91 117 40 235 250 0 0 chr11 81286176 81286228 -69497325 - MIR3 SINE MIR -3 205 154 461 216 34 132 chr11 81286233 81286437 -69497116 - MER5A DNA MER1_type -5 184 1 261 276 198 8 chr11 81286571 81286755 -69496798 + MIR SINE MIR 20 248 -14 1939 127 3 13 chr11 81286829 81287129 -69496424 + AluSx SINE Alu 1 297 -15 409 306 52 10 chr11 81287256 81287449 -69496104 - L1M4 LINE L1 -6341 201 1 288 319 30 6 chr11 81287608 81287774 -69495779 + L1ME3A LINE L1 5779 5948 -222 2164 106 3 7 chr11 81287775 81288068 -69495485 + AluSg SINE Alu 1 292 -18 2661 179 15 42 chr11 81288176 81288695 -69494858 - MLT1D LTR MaLR 0 505 1 228 222 0 0 chr11 81289006 81289051 -69494502 + L1P1 LINE L1 5394 5438 -717 910 284 50 11 chr11 81289056 81289334 -69494219 + L1MC/D LINE L1 5490 5778 -2030 1178 276 128 7 chr11 81289369 81289931 -69493622 + L1ME LINE L1 5188 5817 -345 1868 222 67 7 chr11 81290292 81290736 -69492817 + L1MD2 LINE L1 5673 6144 -215 476 304 50 31 chr11 81290907 81290990 -69492563 + L1MC/D LINE L1 4994 5074 -1100 2351 107 0 3 chr11 81290990 81291298 -69492255 - AluSg1 SINE Alu -1 308 2 476 304 50 31 chr11 81291298 81291644 -69491909 + L1MC/D LINE L1 5074 5431 -743 431 217 51 58 chr11 81291768 81291906 -69491647 - L2 LINE L2 -1 3312 3176 841 194 7 0 chr11 81292116 81292260 -69491293 + FRAM SINE Alu 1 145 -31 27 81 0 0 chr11 81293302 81293364 -69490189 + AT_rich Low_complexity Low_complexity 1 62 0 1925 166 3 0 chr11 81294517 81294824 -69488729 - AluJo SINE Alu -4 308 1 2088 96 0 21 chr11 81295077 81295359 -69488194 + AluSx SINE Alu 1 276 -36 186 43 0 0 chr11 81295388 81295411 -69488142 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 418 228 31 74 chr11 81295857 81296019 -69487534 + MLT1L LTR MaLR 454 608 -7 2159 136 0 0 chr11 81296124 81296418 -69487135 + AluSx SINE Alu 1 294 -18 29 0 0 0 chr11 81296419 81296448 -69487105 + AT_rich Low_complexity Low_complexity 1 29 0 824 223 33 12 chr11 81296551 81296965 -69486588 - L1MC5 LINE L1 -37 7924 7459 23 0 0 0 chr11 81296969 81296992 -69486561 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr11 81297150 81297174 -69486379 + AT_rich Low_complexity Low_complexity 1 24 0 911 137 0 0 chr11 81297372 81297503 -69486050 + FLAM_C SINE Alu 1 131 -12 39 22 0 0 chr11 81297526 81297572 -69485981 + AT_rich Low_complexity Low_complexity 1 46 0 248 316 102 76 chr11 81297587 81297747 -69485806 - L2 LINE L2 -986 2328 2174 2352 82 3 3 chr11 81297747 81298052 -69485501 + AluSx SINE Alu 1 305 -7 248 316 102 76 chr11 81298052 81298195 -69485358 - L2 LINE L2 -1140 2174 2017 281 345 26 0 chr11 81298195 81298308 -69485245 + LTR16B LTR ERVL 1 116 -348 750 233 78 127 chr11 81298472 81299009 -69484544 + MLT1J LTR MaLR 1 511 0 208 213 16 16 chr11 81299081 81299142 -69484411 + (TA)n Simple_repeat Simple_repeat 1 61 0 2239 85 3 10 chr11 81299652 81299959 -69483594 + AluSg1 SINE Alu 1 305 -4 339 275 37 9 chr11 81300204 81300313 -69483240 + L2 LINE L2 3202 3313 0 343 276 161 71 chr11 81300528 81300850 -69482703 + MLT1K LTR MaLR 177 527 -61 385 89 0 20 chr11 81300864 81300932 -69482621 - L1MB3 LINE L1 -28 6146 6083 1899 242 73 20 chr11 81301000 81301293 -69482260 - L1M4 LINE L1 -826 5320 5044 180 0 114 0 chr11 81301293 81301328 -69482225 + T-rich Low_complexity Low_complexity 1 39 0 1644 113 28 60 chr11 81301335 81301617 -69481936 - AluJo SINE Alu -37 275 3 1899 242 73 20 chr11 81301617 81301905 -69481648 - L1M4 LINE L1 -1107 5039 4700 1378 210 39 24 chr11 81302231 81302612 -69480941 + L1ME LINE L1 4359 4745 -1401 330 328 66 74 chr11 81302612 81302856 -69480697 + L2 LINE L2 3017 3258 -14 302 299 61 43 chr11 81303071 81303302 -69480251 + L1ME LINE L1 5589 5823 -298 268 324 63 53 chr11 81303396 81303695 -69479858 + L1MEd LINE L1 91 392 -5727 405 0 0 0 chr11 81303898 81303943 -69479610 + (CA)n Simple_repeat Simple_repeat 1 45 0 531 201 90 35 chr11 81304172 81304316 -69479237 + MER21B LTR ERV1 302 453 -410 839 212 81 10 chr11 81304326 81304524 -69479029 + MLT1C LTR MaLR 206 417 -50 398 178 108 157 chr11 81304562 81304747 -69478806 + MER5B DNA MER1_type 2 177 -1 445 224 0 0 chr11 81304757 81304833 -69478720 + MER58A DNA MER1_type 2 77 -30 4394 214 45 6 chr11 81304899 81305969 -69477584 + L1MB8 LINE L1 3108 4219 -1927 2166 165 47 13 chr11 81305958 81306408 -69477145 + L1MB8 LINE L1 5208 5666 -518 * 1916 119 52 14 chr11 81306408 81306694 -69476859 - AluSx SINE Alu -13 299 3 990 118 0 0 chr11 81306695 81306831 -69476722 - AluSq/x SINE Alu -176 136 1 2239 186 48 15 chr11 81306832 81307294 -69476259 + L1MB8 LINE L1 5662 6138 -40 371 83 0 0 chr11 81307300 81307348 -69476205 + MER66B LTR ERV1 299 346 -140 32 0 0 0 chr11 81307348 81307380 -69476173 + AT_rich Low_complexity Low_complexity 1 32 0 248 140 20 0 chr11 81307380 81307430 -69476123 + L1MB8 LINE L1 6124 6174 -4 415 250 95 9 chr11 81307430 81307546 -69476007 - MER96 DNA MER1_type? -43 132 7 1790 156 0 48 chr11 81308190 81308505 -69475048 - AluJo SINE Alu -12 300 1 272 196 0 0 chr11 81308593 81308639 -69474914 + Alu SINE Alu 2 47 -255 502 143 333 0 chr11 81308740 81308845 -69474708 - AluJo SINE Alu -170 142 3 1720 170 22 0 chr11 81308977 81309281 -69474272 - AluJb SINE Alu 0 310 1 196 299 9 47 chr11 81309440 81309547 -69474006 - L2 LINE L2 -344 2928 2826 238 240 0 0 chr11 81310028 81310078 -69473475 + L1ME LINE L1 523 572 -5958 1291 244 78 53 chr11 81310392 81310942 -69472611 + L1ME LINE L1 917 1480 -5063 1583 178 61 14 chr11 81310943 81311236 -69472317 + AluJo SINE Alu 1 307 -5 243 218 0 0 chr11 81311244 81311299 -69472254 + GA-rich Low_complexity Low_complexity 3 57 0 477 162 50 0 chr11 81311323 81311422 -69472131 + L1ME LINE L1 1860 1963 -4577 330 242 15 0 chr11 81311523 81311589 -69471964 - AluS SINE Alu -228 74 8 1980 91 8 8 chr11 81311647 81311912 -69471641 + AluSx SINE Alu 46 310 -2 21 0 0 0 chr11 81311927 81311948 -69471605 + AT_rich Low_complexity Low_complexity 1 21 0 366 279 66 15 chr11 81311995 81312131 -69471422 + MIR3 SINE MIR 58 200 -8 306 247 12 25 chr11 81312138 81312219 -69471334 - MER116 DNA Mariner 0 80 1 228 276 0 0 chr11 81313266 81313324 -69470229 - MLT1K LTR MaLR -17 571 514 2085 107 3 10 chr11 81313529 81313818 -69469735 + AluSq SINE Alu 1 287 -26 234 125 0 0 chr11 81313819 81313867 -69469686 + (TA)n Simple_repeat Simple_repeat 2 49 0 214 193 70 0 chr11 81313867 81313924 -69469629 + (TCTCTG)n Simple_repeat Simple_repeat 5 65 0 384 211 9 46 chr11 81314095 81314204 -69469349 - L2 LINE L2 -2 3311 3207 * 388 222 9 83 chr11 81314198 81314306 -69469247 - MIR SINE MIR -7 255 156 821 230 90 63 chr11 81314483 81314524 -69469029 - LTR16A1 LTR ERVL -1 456 418 1974 144 7 0 chr11 81314524 81314816 -69468737 - AluJo SINE Alu -18 294 1 821 230 90 63 chr11 81314816 81315139 -69468414 - LTR16A1 LTR ERVL -39 418 82 449 264 92 50 chr11 81315135 81315396 -69468157 - LTR16A1 LTR ERVL -106 351 80 * 2135 110 0 27 chr11 81315640 81315941 -69467612 + AluSx SINE Alu 4 296 -16 2508 93 0 0 chr11 81316052 81316365 -69467188 + AluSq SINE Alu 1 313 0 1494 141 7 60 chr11 81316381 81316650 -69466903 + AluJb SINE Alu 1 255 -57 36 0 0 0 chr11 81316654 81316690 -69466863 + AT_rich Low_complexity Low_complexity 1 36 0 459 289 73 42 chr11 81316733 81317087 -69466466 - MLT1J1 LTR MaLR -121 335 1 180 0 0 0 chr11 81317293 81317313 -69466240 + (T)n Simple_repeat Simple_repeat 1 20 0 964 300 64 7 chr11 81317623 81317920 -69465633 + LTR16A LTR ERVL 130 443 -7 21 0 0 0 chr11 81319267 81319288 -69464265 + AT_rich Low_complexity Low_complexity 1 21 0 416 239 292 23 chr11 81319383 81319588 -69463965 - MIR SINE MIR 0 262 7 183 176 0 0 chr11 81319718 81319745 -69463808 - MIR3 SINE MIR 0 208 182 409 303 43 0 chr11 81319745 81319878 -69463675 + MIR SINE MIR 1 138 -70 618 193 9 9 chr11 81319954 81320068 -69463485 - MER45A DNA AcHobo -19 159 46 332 262 37 98 chr11 81320135 81320212 -69463341 - MIR3 SINE MIR -43 165 102 2013 133 0 0 chr11 81320212 81320491 -69463062 + AluSg SINE Alu 1 279 -31 332 262 37 98 chr11 81320491 81320577 -69462976 - MIR3 SINE MIR -106 102 12 358 273 108 0 chr11 81320631 81320770 -69462783 + MER103 DNA DNA 3 156 -10 210 304 25 51 chr11 81321194 81321273 -69462280 + MIR SINE MIR 36 112 -96 1086 291 44 17 chr11 81322081 81322487 -69461066 - LTR16B LTR ERVL -14 450 34 190 291 110 31 chr11 81323254 81323381 -69460172 + MIR3 SINE MIR 64 200 -8 21 0 0 0 chr11 81323426 81323447 -69460106 + GC_rich Low_complexity Low_complexity 1 21 0 248 304 0 0 chr11 81324429 81324484 -69459069 + L2 LINE L2 2989 3043 -229 553 276 77 28 chr11 81324484 81324665 -69458888 + MER91B DNA MER1_type 1 190 0 369 297 50 84 chr11 81324669 81324908 -69458645 + L2 LINE L2 3040 3270 -2 367 293 88 33 chr11 81324984 81325165 -69458388 + MIR SINE MIR 47 237 -25 182 31 0 62 chr11 81325441 81325473 -69458080 + (CACCC)n Simple_repeat Simple_repeat 3 32 0 298 364 46 46 chr11 81326185 81326336 -69457217 - MIR3 SINE MIR -52 156 6 188 339 32 16 chr11 81326626 81326688 -69456865 + L2 LINE L2 2981 3043 -229 2227 110 156 8 chr11 81326746 81327118 -69456435 - MSTA LTR MaLR -1 427 1 225 398 155 12 chr11 81327186 81327347 -69456206 + L2 LINE L2 3087 3270 -2 657 247 132 0 chr11 81327699 81327889 -69455664 - MIR SINE MIR -43 219 5 994 109 0 7 chr11 81327904 81328041 -69455512 + AluJb SINE Alu 1 136 -176 2004 160 3 0 chr11 81328041 81328348 -69455205 + AluJb SINE Alu 1 308 -4 361 288 178 38 chr11 81328594 81328858 -69454695 - MLT1H LTR MaLR -4 545 245 312 288 30 8 chr11 81328906 81329038 -69454515 + MIR SINE MIR 71 205 -57 26 64 0 0 chr11 81329322 81329369 -69454184 + AT_rich Low_complexity Low_complexity 1 47 0 1927 141 3 44 chr11 81330752 81331072 -69452481 - AluJb SINE Alu -5 307 1 301 114 0 0 chr11 81331248 81331292 -69452261 + L1MB1 LINE L1 6077 6120 -48 550 288 106 18 chr11 81331451 81331677 -69451876 + MIR SINE MIR 5 250 -12 1141 229 115 24 chr11 81332758 81332772 -69450781 - L1ME3A LINE L1 -302 5868 5857 2107 125 46 27 chr11 81332772 81333140 -69450413 - THE1C LTR MaLR 0 375 1 1141 229 115 24 chr11 81333140 81333491 -69450062 - L1ME3A LINE L1 -313 5857 5474 892 157 0 0 chr11 81333506 81333653 -69449900 + AluSg/x SINE Alu 161 307 -3 396 255 77 62 chr11 81333653 81333840 -69449713 - L1ME3A LINE L1 -720 5444 5261 1832 167 0 16 chr11 81333840 81334145 -69449408 - AluJb SINE Alu -12 300 1 396 255 77 62 chr11 81334145 81334380 -69449173 - L1ME3A LINE L1 -903 5261 5031 1914 158 37 0 chr11 81334380 81334678 -69448875 - AluJb SINE Alu -3 309 1 396 255 77 62 chr11 81334678 81335077 -69448476 - L1ME3A LINE L1 -1133 5031 4627 2271 103 3 6 chr11 81335077 81335389 -69448164 - AluSx SINE Alu -1 311 1 396 255 77 62 chr11 81335389 81335653 -69447900 - L1ME3A LINE L1 -1537 4627 4369 2441 96 0 0 chr11 81335653 81335965 -69447588 + AluSx SINE Alu 1 312 0 237 65 0 0 chr11 81335984 81336015 -69447538 + (A)n Simple_repeat Simple_repeat 1 31 0 30 0 0 0 chr11 81336422 81336452 -69447101 + AT_rich Low_complexity Low_complexity 1 30 0 48 0 0 0 chr11 81336573 81336621 -69446932 + AT_rich Low_complexity Low_complexity 1 48 0 425 335 54 0 chr11 81336750 81336974 -69446579 + L1M4 LINE L1 4105 4340 -1806 28 0 0 0 chr11 81337402 81337430 -69446123 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr11 81337577 81337599 -69445954 + (A)n Simple_repeat Simple_repeat 1 22 0 1070 239 21 11 chr11 81337599 81337884 -69445669 + L1M4c LINE L1 1554 1841 -4543 558 145 57 0 chr11 81337943 81338067 -69445486 + L1M4 LINE L1 5087 5217 -929 204 40 0 0 chr11 81338118 81338143 -69445410 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 1842 124 0 25 chr11 81338762 81339045 -69444508 + AluSx SINE Alu 1 276 -36 183 42 0 0 chr11 81339050 81339074 -69444479 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 2672 130 61 36 chr11 81339115 81339592 -69443961 + LTR2B LTR ERV1 1 489 -1 540 165 55 0 chr11 81339601 81339692 -69443861 + MER63 DNA MER1_type 34 755 -307 2088 78 0 78 chr11 81340023 81340191 -69443362 - AluSq SINE Alu -12 301 166 2031 133 0 3 chr11 81340191 81340485 -69443068 - AluSc SINE Alu -15 294 2 2088 78 0 78 chr11 81340485 81340625 -69442928 - AluSq SINE Alu -147 166 17 2469 154 37 5 chr11 81340625 81341035 -69442518 + MSTB LTR MaLR 4 426 0 180 327 18 0 chr11 81341048 81341103 -69442450 + MIR SINE MIR 200 255 -7 220 232 18 0 chr11 81341339 81341395 -69442158 + MIR SINE MIR 86 142 -120 2856 246 91 24 chr11 81341457 81342266 -69441287 + L1MEc LINE L1 338 1234 -5162 2114 148 0 3 chr11 81342266 81342577 -69440976 + AluSx SINE Alu 1 310 -2 2856 246 91 24 chr11 81342577 81342811 -69440742 + L1MEc LINE L1 1234 1451 -4945 714 228 22 0 chr11 81342812 81342948 -69440605 - MER7C DNA MER2_type 0 612 474 2013 190 68 32 chr11 81342948 81343391 -69440162 - LTR2B LTR ERV1 0 490 32 970 130 7 0 chr11 81343408 81343562 -69439991 - MER7C DNA MER2_type -133 470 316 759 174 8 23 chr11 81343576 81343708 -69439845 + FLAM_A SINE Alu 1 130 -12 1617 133 3 111 chr11 81343708 81344024 -69439529 - MER7C DNA MER2_type -288 314 33 1473 246 102 60 chr11 81344037 81344396 -69439157 + L1MEc LINE L1 1450 1847 -4549 1843 131 10 49 chr11 81344396 81344702 -69438851 + AluJo SINE Alu 1 294 -18 1473 246 102 60 chr11 81344702 81344959 -69438594 + L1MEc LINE L1 1847 2092 -4304 * 20608 25 0 0 chr11 81344952 81348137 -69435416 + L1PA3 LINE L1 2984 6167 0 1482 180 14 14 chr11 81348153 81348431 -69435122 - MER7A DNA MER2_type -69 277 2 188 244 39 90 chr11 81348587 81348665 -69434888 + MIR SINE MIR 69 142 -66 288 0 0 0 chr11 81349050 81349082 -69434471 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 347 162 15 0 chr11 81349086 81349154 -69434399 + L1MEc LINE L1 2092 2160 -4236 353 277 63 50 chr11 81349420 81349579 -69433974 - MIR3 SINE MIR -12 196 36 242 286 202 0 chr11 81349977 81350096 -69433457 + MIR SINE MIR 49 191 -71 1569 187 3 46 chr11 81350140 81350445 -69433108 - AluJo SINE Alu -20 292 1 419 261 0 9 chr11 81350469 81350580 -69432973 - MIR SINE MIR -63 199 90 2493 70 0 0 chr11 81350947 81351245 -69432308 - AluY SINE Alu -13 298 1 942 234 116 65 chr11 81351551 81351948 -69431605 - L1MC4a LINE L1 -1875 5933 5517 751 96 48 24 chr11 81351994 81352105 -69431448 - MER50 LTR ERV1 -121 613 497 1541 170 3 61 chr11 81352105 81352416 -69431137 - AluJo SINE Alu -1 311 19 751 96 48 24 chr11 81352416 81352429 -69431124 - MER50 LTR ERV1 -237 497 486 1659 218 81 65 chr11 81352434 81352631 -69430922 - L1MC5 LINE L1 -36 7925 7733 2077 142 0 3 chr11 81352631 81352927 -69430626 + AluJb SINE Alu 1 295 -17 1659 218 81 65 chr11 81352927 81353393 -69430160 - L1MC5 LINE L1 -228 7733 7251 1768 157 10 39 chr11 81353502 81353807 -69429746 - AluJb SINE Alu -16 296 1 1842 175 69 11 chr11 81354323 81354573 -69428980 - MER82 DNA MER2_type -262 391 114 2238 116 0 10 chr11 81354573 81354875 -69428678 + AluSx SINE Alu 1 299 -13 1842 175 69 11 chr11 81354875 81354973 -69428580 - MER82 DNA MER2_type -539 114 23 2101 124 35 0 chr11 81355080 81355370 -69428183 + AluSx SINE Alu 1 300 -12 1939 147 10 3 chr11 81355394 81355693 -69427860 - AluSg SINE Alu -9 301 1 276 241 91 86 chr11 81355693 81356113 -69427440 + L1MEc LINE L1 1978 2399 -3997 531 200 121 24 chr11 81356124 81356289 -69427264 - L3 LINE CR1 -86 1491 1311 298 320 98 10 chr11 81356301 81356504 -69427049 + L2 LINE L2 3052 3272 0 296 289 154 0 chr11 81356516 81356672 -69426881 - L3 LINE CR1 -348 1229 1050 235 321 94 0 chr11 81356667 81356773 -69426780 - L2 LINE L2 -34 3238 3123 * 1009 230 69 25 chr11 81356889 81357163 -69426390 - MLT1K LTR MaLR 0 588 303 445 240 48 55 chr11 81357238 81357384 -69426169 - MLT1K LTR MaLR -442 146 2 2000 144 0 26 chr11 81357605 81357910 -69425643 + AluJb SINE Alu 1 297 -15 1113 251 153 8 chr11 81357946 81358305 -69425248 + LTR16C LTR ERVL 72 482 -9 197 224 0 17 chr11 81358572 81358630 -69424923 - MIR SINE MIR -67 141 85 363 224 179 8 chr11 81359061 81359195 -69424358 - L2 LINE L2 -220 3052 2896 467 287 55 5 chr11 81359428 81359759 -69423794 + LTR33 LTR ERVL 90 512 -9 2262 114 3 3 chr11 81359886 81360194 -69423359 - AluSx SINE Alu -4 308 1 266 250 116 9 chr11 81360283 81360395 -69423158 - MIR SINE MIR -108 154 31 242 282 29 10 chr11 81360511 81360614 -69422939 - MIR3 SINE MIR -15 193 89 251 349 12 0 chr11 81361086 81361172 -69422381 - L2 LINE L2 -64 3208 3122 250 279 266 19 chr11 81361213 81361367 -69422186 - L2 LINE L2 -879 2435 2244 220 312 220 7 chr11 81361480 81361621 -69421932 - L2 LINE L2 0 3272 3102 554 259 112 12 chr11 81361674 81361933 -69421620 - LTR33 LTR ERVL 0 521 237 303 278 9 26 chr11 81362004 81362119 -69421434 - L2 LINE L2 -191 3122 3010 2128 114 24 20 chr11 81362548 81362846 -69420707 - AluSg SINE Alu -10 300 2 1962 164 0 13 chr11 81362849 81363148 -69420405 - AluJb SINE Alu -17 295 1 534 267 131 9 chr11 81363150 81363371 -69420182 + L3 LINE CR1 1250 1497 -80 1922 137 8 0 chr11 81363371 81363634 -69419919 + AluSx SINE Alu 1 265 -47 521 283 6 25 chr11 81363948 81364107 -69419446 + MER5A DNA MER1_type 26 181 -8 1650 158 41 0 chr11 81364117 81364383 -69419170 + AluJb SINE Alu 5 281 -31 444 37 0 0 chr11 81364384 81364438 -69419115 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 199 224 211 13 chr11 81366242 81366318 -69417235 + MIR SINE MIR 31 121 -87 339 261 80 43 chr11 81366486 81366624 -69416929 - MIR3 SINE MIR -57 151 9 339 226 13 123 chr11 81366866 81367021 -69416532 - MIR3 SINE MIR -62 146 9 216 278 144 0 chr11 81367355 81367445 -69416108 - MIR SINE MIR -109 153 51 432 55 0 0 chr11 81367953 81368008 -69415545 + (CA)n Simple_repeat Simple_repeat 2 56 0 377 287 35 58 chr11 81368070 81368328 -69415225 - L2 LINE L2 -189 3083 2832 474 266 30 69 chr11 81368388 81368591 -69414962 + MIR3 SINE MIR 1 195 -13 610 242 5 84 chr11 81369282 81369472 -69414081 + MIR3 SINE MIR 16 190 -18 382 234 62 31 chr11 81370218 81370346 -69413207 - MIR3 SINE MIR -34 174 43 251 296 0 12 chr11 81370329 81370410 -69413143 + MIR3 SINE MIR 107 186 -22 * 1916 126 29 4 chr11 81371461 81371762 -69411791 - AluSx SINE Alu 0 308 1 797 161 31 12 chr11 81371764 81371785 -69411768 - L1MB2 LINE L1 -1 6170 6151 243 0 0 0 chr11 81371785 81371812 -69411741 + (CA)n Simple_repeat Simple_repeat 2 28 0 797 161 31 12 chr11 81371812 81371952 -69411601 - L1MB2 LINE L1 -20 6151 6006 352 323 60 40 chr11 81372128 81372530 -69411023 + L2 LINE L2 2547 2956 -358 2461 46 0 3 chr11 81373562 81373846 -69409707 + AluY SINE Alu 20 302 -9 2220 103 3 7 chr11 81374254 81374555 -69408998 - AluSx SINE Alu -12 300 1 404 310 35 7 chr11 81374687 81374829 -69408724 + MIR3 SINE MIR 54 199 -9 363 289 33 25 chr11 81374891 81375012 -69408541 - L2 LINE L2 -13 3300 3179 2620 110 6 3 chr11 81375042 81375405 -69408148 - THE1B LTR MaLR 0 364 1 363 130 145 14 chr11 81376430 81376499 -69407054 - MER69 DNA AcHobo 0 2526 2449 * 655 252 7 7 chr11 81376493 81376640 -69406913 - MER69 DNA AcHobo -2378 148 2 1443 143 42 0 chr11 81376748 81376925 -69406628 - AluSx SINE Alu -2 310 119 387 0 0 0 chr11 81376925 81376968 -69406585 + (TA)n Simple_repeat Simple_repeat 1 43 0 1443 143 42 0 chr11 81376968 81377028 -69406525 - AluSx SINE Alu -193 119 63 199 224 211 13 chr11 81377517 81377593 -69405960 + MIR SINE MIR 31 121 -87 339 261 80 43 chr11 81377761 81377899 -69405654 - MIR3 SINE MIR -57 151 9 339 226 13 123 chr11 81378141 81378296 -69405257 - MIR3 SINE MIR -62 146 9 216 278 144 0 chr11 81378630 81378720 -69404833 - MIR SINE MIR -109 153 51 450 53 0 0 chr11 81379228 81379285 -69404268 + (CA)n Simple_repeat Simple_repeat 2 58 0 377 287 35 58 chr11 81379347 81379605 -69403948 - L2 LINE L2 -189 3083 2832 474 266 30 69 chr11 81379665 81379868 -69403685 + MIR3 SINE MIR 1 195 -13 610 242 5 84 chr11 81380559 81380749 -69402804 + MIR3 SINE MIR 16 190 -18 382 234 62 31 chr11 81381495 81381623 -69401930 - MIR3 SINE MIR -34 174 43 251 296 0 12 chr11 81381606 81381687 -69401866 + MIR3 SINE MIR 107 186 -22 * 1916 126 29 4 chr11 81382738 81383039 -69400514 - AluSx SINE Alu 0 308 1 797 161 31 12 chr11 81383041 81383062 -69400491 - L1MB2 LINE L1 -1 6170 6151 243 0 0 0 chr11 81383062 81383089 -69400464 + (CA)n Simple_repeat Simple_repeat 2 28 0 797 161 31 12 chr11 81383089 81383229 -69400324 - L1MB2 LINE L1 -20 6151 6006 352 323 60 40 chr11 81383405 81383807 -69399746 + L2 LINE L2 2547 2956 -358 2452 46 0 3 chr11 81384839 81385122 -69398431 + AluY SINE Alu 20 301 -10 15355 148 40 15 chr11 81385122 81385711 -69397842 + L1MA2 LINE L1 3088 3661 -4062 1744 81 36 0 chr11 81385711 81385933 -69397620 + MER30 DNA MER1_type 1 230 0 15355 148 40 15 chr11 81385933 81389846 -69393707 + L1MA2 LINE L1 3661 7707 -16 344 192 10 0 chr11 81389850 81389954 -69393599 + (TA)n Simple_repeat Simple_repeat 2 106 0 249 73 0 0 chr11 81389966 81390007 -69393546 + L1MA3 LINE L1 6265 6305 0 21 0 0 0 chr11 81390007 81390028 -69393525 + AT_rich Low_complexity Low_complexity 1 21 0 965 188 0 0 chr11 81390039 81390199 -69393354 - FRAM SINE Alu -20 156 1 1364 175 13 79 chr11 81390213 81390544 -69393009 + L1ME2 LINE L1 5870 6334 0 200 102 0 119 chr11 81390573 81390632 -69392921 + (T)n Simple_repeat Simple_repeat 1 52 0 25 0 0 0 chr11 81391082 81391107 -69392446 + GC_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr11 81391163 81391187 -69392366 + AT_rich Low_complexity Low_complexity 1 24 0 46 19 0 0 chr11 81391193 81391246 -69392307 + GC_rich Low_complexity Low_complexity 1 53 0 186 43 0 0 chr11 81391339 81391362 -69392191 + (A)n Simple_repeat Simple_repeat 1 23 0 1087 230 100 69 chr11 81391528 81391679 -69391874 + LTR38 LTR ERV1 1 146 -410 2039 101 50 0 chr11 81391679 81391957 -69391596 + AluSg SINE Alu 1 292 -18 1087 230 100 69 chr11 81391957 81392344 -69391209 + LTR38 LTR ERV1 146 556 0 690 220 8 0 chr11 81392450 81392582 -69390971 + FLAM_A SINE Alu 1 133 0 2193 134 40 3 chr11 81392829 81393180 -69390373 - THE1B LTR MaLR 0 364 1 509 253 127 27 chr11 81393208 81393429 -69390124 + MIR SINE MIR 20 262 0 620 189 209 5 chr11 81393490 81393691 -69389862 - LTR50 LTR ERVL -5 790 549 688 186 181 40 chr11 81393727 81393975 -69389578 - LTR50 LTR ERVL -497 298 16 1045 150 71 44 chr11 81394447 81394673 -69388880 - AluJo SINE Alu -18 294 63 359 277 10 10 chr11 81394707 81394808 -69388745 + MIR3 SINE MIR 101 201 -7 4076 93 13 4 chr11 81394837 81395386 -69388167 - MER41A LTR ERV1 0 554 1 1917 99 70 4 chr11 81396150 81396423 -69387130 - AluSx SINE Alu -21 291 1 2123 128 0 0 chr11 81396979 81397261 -69386292 + AluSx SINE Alu 1 282 -30 2418 81 0 0 chr11 81397262 81397560 -69385993 - AluY SINE Alu -13 298 1 744 185 83 13 chr11 81397719 81397876 -69385677 + MLT1D LTR MaLR 1 168 -337 362 237 0 0 chr11 81397897 81397973 -69385580 + MLT1D LTR MaLR 371 446 -59 1489 180 0 77 chr11 81397975 81398302 -69385251 - AluJo SINE Alu -10 302 1 2176 145 21 0 chr11 81398360 81398691 -69384862 + LTR32 LTR ERVL 12 349 -122 965 118 13 13 chr11 81398712 81398864 -69384689 + LTR32 LTR ERVL 320 471 0 1085 298 72 49 chr11 81399047 81399405 -69384148 - HERV16 LTR ERVL -4473 523 148 2201 121 0 10 chr11 81399405 81399710 -69383843 - AluSx SINE Alu -10 302 1 1085 298 72 49 chr11 81399710 81399861 -69383692 - HERV16 LTR ERVL -4848 148 2 852 320 31 9 chr11 81399868 81400190 -69383363 - LTR16A LTR ERVL -104 346 18 314 267 193 0 chr11 81400219 81400354 -69383199 - MIR SINE MIR -53 209 49 2180 93 0 64 chr11 81400523 81400835 -69382718 - AluSc SINE Alu -17 292 1 1933 153 35 75 chr11 81400851 81401223 -69382330 - LTR18A LTR ERVL 0 357 1 4595 165 13 0 chr11 81401288 81402004 -69381549 - HERVL18 LTR ERVL 0 6047 5323 2985 152 30 2 chr11 81401992 81402453 -69381100 - HERVL18 LTR ERVL -2111 3936 3463 * 22 35 0 0 chr11 81402728 81402757 -69380796 + AT_rich Low_complexity Low_complexity 1 29 0 225 0 0 0 chr11 81402904 81402929 -69380624 + (A)n Simple_repeat Simple_repeat 1 25 0 2324 86 0 20 chr11 81403615 81403917 -69379636 + AluSx SINE Alu 1 296 -16 243 0 0 0 chr11 81405028 81405055 -69378498 + (GA)n Simple_repeat Simple_repeat 1 27 0 783 143 291 0 chr11 81405300 81405510 -69378043 - L1MA6 LINE L1 -4 6296 6026 741 120 0 34 chr11 81407313 81407430 -69376123 + FLAM_C SINE Alu 2 114 -19 226 321 14 0 chr11 81407921 81408005 -69375548 + MIR SINE MIR 56 141 -67 453 274 56 28 chr11 81408234 81408413 -69375140 + L2 LINE L2 2271 2454 -860 195 100 0 0 chr11 81408436 81408466 -69375087 + (CAG)n Simple_repeat Simple_repeat 2 31 0 237 206 73 15 chr11 81408679 81408747 -69374806 + MLT1K LTR MaLR 517 588 0 720 242 140 39 chr11 81408809 81409094 -69374459 - MLT1I LTR MaLR -95 314 1 221 284 15 0 chr11 81409095 81409162 -69374391 - L2 LINE L2 -19 3253 3186 298 284 0 11 chr11 81409265 81409360 -69374193 - MER102a DNA MER1_type -1 329 236 1718 90 0 5 chr11 81409383 81409594 -69373959 + AluSq SINE Alu 1 210 -103 552 185 49 103 chr11 81409673 81409857 -69373696 - MER102a DNA MER1_type -147 183 10 330 326 41 0 chr11 81409867 81410014 -69373539 + L3 LINE CR1 1010 1162 -415 294 333 11 0 chr11 81410059 81410152 -69373401 - L2 LINE L2 -36 3236 3143 279 268 203 22 chr11 81410206 81410344 -69373209 - MIR SINE MIR 0 262 100 230 297 0 0 chr11 81410485 81410549 -69373004 + L3 LINE CR1 1437 1500 -77 321 290 103 19 chr11 81410841 81410996 -69372557 + MIR3 SINE MIR 16 183 -25 1175 150 46 78 chr11 81411133 81411328 -69372225 + MER33 DNA MER1_type 29 212 -2373 869 167 0 0 chr11 81411328 81411460 -69372093 + FLAM_C SINE Alu 1 132 -1 1175 150 46 78 chr11 81411460 81411570 -69371983 + MER33 DNA MER1_type 212 324 0 249 255 255 11 chr11 81411576 81411670 -69371883 - MIR3 SINE MIR -77 131 15 2601 190 61 4 chr11 81411679 81412184 -69371369 + MLT1F LTR MaLR 1 534 -8 1397 193 10 10 chr11 81413373 81413674 -69369879 + AluY SINE Alu 1 301 -10 22 0 0 0 chr11 81414031 81414053 -69369500 + GC_rich Low_complexity Low_complexity 1 22 0 1300 142 0 34 chr11 81414209 81414413 -69369140 - AluJo SINE Alu -115 197 1 566 325 21 17 chr11 81414415 81414649 -69368904 + L2 LINE L2 2618 2852 -462 1746 189 0 7 chr11 81414994 81415285 -69368268 - AluJo SINE Alu -23 289 1 220 194 0 0 chr11 81416483 81416519 -69367034 + (TGGA)n Simple_repeat Simple_repeat 1 36 0 257 322 0 22 chr11 81416645 81416735 -69366818 - L2 LINE L2 0 3272 3185 565 305 49 9 chr11 81416747 81416973 -69366580 + MIR SINE MIR 28 262 0 307 288 72 0 chr11 81417329 81417440 -69366113 - L2 LINE L2 -1 3271 3153 2206 110 7 3 chr11 81417672 81417981 -69365572 - AluY SINE Alu -1 310 1 19626 129 42 5 chr11 81417981 81420948 -69362605 - L1M1 LINE L1 -4468 3097 22 271 74 93 56 chr11 81420953 81421007 -69362546 - Zaphod DNA AcHobo -181 3850 3795 957 196 37 99 chr11 81421074 81421456 -69362097 - Zaphod DNA AcHobo -393 3638 3281 * 1449 232 77 11 chr11 81421448 81421827 -69361726 - Zaphod DNA AcHobo -3372 659 256 482 179 26 34 chr11 81421839 81421956 -69361597 + L1ME2 LINE L1 6034 6149 -15 406 252 72 0 chr11 81421962 81422073 -69361480 - Zaphod DNA AcHobo -3779 252 134 189 0 0 0 chr11 81422243 81422264 -69361289 + (T)n Simple_repeat Simple_repeat 1 21 0 840 237 6 90 chr11 81422486 81422807 -69360746 + L1M4 LINE L1 3711 4004 -2142 1446 127 9 0 chr11 81422855 81423076 -69360477 - L1MD1 LINE L1 -2 6240 6018 4254 149 38 1 chr11 81423103 81424014 -69359539 - L1MD1 LINE L1 -312 5930 4982 1323 39 0 0 chr11 81424014 81424169 -69359384 - L1PA3 LINE L1 0 6155 6001 848 39 0 0 chr11 81424170 81424273 -69359280 + L1P LINE L1 5127 5229 -917 766 242 6 0 chr11 81424315 81424493 -69359060 - L1MD1 LINE L1 -1194 4952 4774 6696 101 22 1 chr11 81424493 81425397 -69358156 + Tigger4(Zombi) DNA MER2_type 1 923 -1808 * 7509 96 41 6 chr11 81425394 81425617 -69357936 + Tigger4(Zombi) DNA MER2_type 1629 1843 -888 198 118 0 0 chr11 81425617 81425651 -69357902 + (ATG)n Simple_repeat Simple_repeat 1 34 0 7509 96 41 6 chr11 81425651 81426492 -69357061 + Tigger4(Zombi) DNA MER2_type 1843 2731 0 4188 204 36 52 chr11 81426499 81426649 -69356904 - L1MD1 LINE L1 -1380 4766 4615 2164 85 42 14 chr11 81426649 81426932 -69356621 + AluY SINE Alu 1 291 -20 4188 204 36 52 chr11 81426932 81427938 -69355615 - L1MD1 LINE L1 -1531 4615 3628 * 5836 84 6 6 chr11 81427936 81428713 -69354840 - L1PA11 LINE L1 -7 6167 5391 418 162 0 0 chr11 81428726 81428800 -69354753 - FLAM_A SINE Alu -10 132 59 1826 232 20 0 chr11 81428802 81429242 -69354311 - L1MD1 LINE L1 -3447 2699 2251 706 171 0 0 chr11 81429242 81429347 -69354206 + Tigger3(Golem) DNA MER2_type 1 105 -2924 * 2369 135 141 10 chr11 81429341 81429830 -69353723 + Tigger3(Golem) DNA MER2_type 2277 2829 -200 1012 239 45 10 chr11 81429851 81430140 -69353413 + L1ME2 LINE L1 5531 5829 -335 194 318 45 0 chr11 81430189 81430255 -69353298 - MIR SINE MIR -48 214 146 1558 260 119 72 chr11 81430332 81431013 -69352540 - MER21B LTR ERV1 -145 718 6 23 0 0 0 chr11 81431022 81431045 -69352508 + AT_rich Low_complexity Low_complexity 1 23 0 2187 108 0 13 chr11 81431054 81431361 -69352192 + AluSx SINE Alu 1 303 -9 624 225 0 0 chr11 81431367 81431478 -69352075 - FLAM_C SINE Alu -31 112 2 402 267 137 14 chr11 81431482 81431628 -69351925 - MIR SINE MIR -98 164 1 604 223 38 19 chr11 81432287 81432444 -69351109 - MLT1J LTR MaLR -313 198 39 2301 58 10 0 chr11 81433069 81433362 -69350191 + AluY SINE Alu 2 297 -14 2869 139 2 70 chr11 81433621 81434124 -69349429 - HERVL18 LTR ERVL -2638 3409 2941 2381 180 3 3 chr11 81434112 81434479 -69349074 - HERVL18 LTR ERVL -2963 3084 2718 * 1206 155 64 2 chr11 81434476 81434736 -69348817 - HERVL18 LTR ERVL -3595 2452 2119 * 2706 203 14 26 chr11 81434761 81435686 -69347867 - HERVL18 LTR ERVL -4425 1622 13 1932 147 21 103 chr11 81435704 81436093 -69347460 - LTR18A LTR ERVL 0 357 1 709 267 89 9 chr11 81436162 81436393 -69347160 - LTR33 LTR ERVL -258 265 36 526 237 61 9 chr11 81436413 81436527 -69347026 + L1M4b LINE L1 1 120 -6739 908 110 0 0 chr11 81436527 81436645 -69346908 + FLAM_C SINE Alu 1 118 -15 5021 209 48 41 chr11 81436697 81438070 -69345483 + L1M4b LINE L1 104 1466 -5493 2363 130 65 23 chr11 81438070 81438502 -69345051 + LTR7 LTR ERV1 1 450 0 5021 209 48 41 chr11 81438502 81438792 -69344761 + L1M4b LINE L1 1466 1752 -5207 2213 106 0 0 chr11 81438792 81439093 -69344460 + AluSx SINE Alu 1 301 -11 5021 209 48 41 chr11 81439093 81439378 -69344175 + L1M4b LINE L1 1752 2131 -4828 1831 169 3 3 chr11 81439378 81439685 -69343868 + AluJb SINE Alu 1 307 -5 5021 209 48 41 chr11 81439685 81439815 -69343738 + L1M4b LINE L1 2131 2259 -4700 23 33 0 0 chr11 81439845 81439875 -69343678 + AT_rich Low_complexity Low_complexity 1 30 0 254 253 38 0 chr11 81440056 81440135 -69343418 + L1M4 LINE L1 5118 5199 -947 22 0 0 0 chr11 81440136 81440158 -69343395 + GC_rich Low_complexity Low_complexity 1 22 0 216 328 8 34 chr11 81440310 81440429 -69343124 - L2 LINE L2 -848 2466 2351 294 337 154 9 chr11 81440818 81441162 -69342391 + L2 LINE L2 2863 3256 -16 517 278 67 33 chr11 81441364 81441544 -69342009 + MIR SINE MIR 21 206 -56 990 153 25 30 chr11 81441551 81441753 -69341800 + L1MB4 LINE L1 5979 6179 -1 207 200 0 0 chr11 81442183 81442228 -69341325 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 230 81 27 0 chr11 81442524 81442561 -69340992 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 550 283 16 26 chr11 81442568 81442759 -69340794 + MIR3 SINE MIR 20 208 0 209 179 0 26 chr11 81442844 81442883 -69340670 - L3 LINE CR1 -15 1562 1525 549 80 0 0 chr11 81442885 81442960 -69340593 + (TCCA)n Simple_repeat Simple_repeat 1 75 0 213 322 67 0 chr11 81442969 81443059 -69340494 - L2 LINE L2 -31 3282 3187 2319 93 0 0 chr11 81444017 81444317 -69339236 + AluSp SINE Alu 1 300 -13 197 301 24 36 chr11 81444684 81444767 -69338786 + MIR SINE MIR 90 171 -91 619 229 0 0 chr11 81444821 81444952 -69338601 + AluJ SINE Alu 3 133 -169 498 88 15 0 chr11 81445088 81445156 -69338397 - AluS SINE Alu -243 70 2 731 187 75 0 chr11 81446026 81446160 -69337393 + AluJ SINE Alu 137 280 -32 225 0 0 0 chr11 81446162 81446187 -69337366 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 371 317 17 8 chr11 81446303 81446423 -69337130 + L2 LINE L2 3193 3313 0 495 252 49 35 chr11 81446425 81446568 -69336985 - MIR3 SINE MIR -48 160 16 540 175 79 0 chr11 81447153 81447267 -69336286 + MER69A DNA AcHobo 1 123 -54 28 0 0 0 chr11 81447267 81447295 -69336258 + AT_rich Low_complexity Low_complexity 1 28 0 1383 229 65 3 chr11 81447310 81447616 -69335937 - MLT1E3 LTR MaLR -6 618 294 1784 168 18 70 chr11 81447618 81448006 -69335547 + MLT1A2 LTR MaLR 1 368 -6 474 206 319 58 chr11 81448025 81448112 -69335441 - MLT1E1 LTR MaLR -301 353 290 2273 72 3 28 chr11 81448112 81448431 -69335122 - AluY SINE Alu 0 311 1 474 206 319 58 chr11 81448431 81448619 -69334934 - MLT1E1 LTR MaLR -364 290 6 355 158 0 0 chr11 81448622 81448679 -69334874 + MER69A DNA AcHobo 118 174 -3 1994 122 0 16 chr11 81448879 81449182 -69334371 - AluSq SINE Alu -15 298 1 27 29 0 0 chr11 81449480 81449514 -69334039 + AT_rich Low_complexity Low_complexity 1 34 0 1666 141 12 53 chr11 81449696 81450016 -69333537 - AluJb SINE Alu -5 307 1 1218 193 42 113 chr11 81450243 81450742 -69332811 + MER39 LTR ERV1 118 707 0 392 254 34 22 chr11 81450757 81450947 -69332606 - L1MC/D LINE L1 -725 5445 5298 217 307 27 13 chr11 81450975 81451050 -69332503 - MIR3 SINE MIR -130 78 3 363 250 11 0 chr11 81451325 81451413 -69332140 - MER39 LTR ERV1 -16 691 603 2035 110 0 7 chr11 81451413 81451695 -69331858 + AluSx SINE Alu 1 280 -32 258 105 0 0 chr11 81451695 81451733 -69331820 + (GGAGA)n Simple_repeat Simple_repeat 5 42 0 608 197 27 48 chr11 81451735 81451923 -69331630 - MER39 LTR ERV1 -91 616 433 1028 215 10 0 chr11 81451926 81452135 -69331418 + AluJo SINE Alu 2 212 -100 26 0 0 0 chr11 81452320 81452346 -69331207 + AT_rich Low_complexity Low_complexity 1 26 0 916 207 60 73 chr11 81452761 81453061 -69330492 + LTR16A LTR ERVL 147 442 -8 435 236 44 71 chr11 81453076 81453258 -69330295 + L2 LINE L2 3104 3280 -33 2114 138 0 3 chr11 81553262 81553566 -69229987 - AluJo SINE Alu -6 306 4 280 239 125 11 chr11 81553572 81553660 -69229893 - MIR SINE MIR -55 153 56 238 297 75 4 chr11 81553964 81554083 -69229470 - MIR SINE MIR -50 212 78 5369 130 32 27 chr11 81554184 81555045 -69228508 + MER49 LTR ERV1 1 868 -55 1597 170 53 3 chr11 81555045 81555327 -69228226 + AluJo SINE Alu 16 311 -1 5369 130 32 27 chr11 81555327 81555380 -69228173 + MER49 LTR ERV1 868 919 -4 210 191 48 0 chr11 81555388 81555430 -69228123 - MIR SINE MIR -113 149 106 296 270 22 11 chr11 81555972 81556061 -69227492 + MIR3 SINE MIR 104 193 -15 289 330 0 10 chr11 81556087 81556190 -69227363 + MIR SINE MIR 48 149 -59 389 288 18 42 chr11 81556489 81556653 -69226900 - MIR SINE MIR -62 146 30 2184 123 0 0 chr11 81557346 81557673 -69225880 + AluSx SINE Alu 1 312 0 274 191 0 0 chr11 81558044 81558091 -69225462 - L2 LINE L2 0 3313 3267 328 276 112 30 chr11 81558363 81558497 -69225056 + MIR SINE MIR 67 211 -51 375 315 54 27 chr11 81558612 81558786 -69224767 - MIR3 SINE MIR -60 148 11 289 234 0 0 chr11 81559794 81559858 -69223695 + L2 LINE L2 3209 3272 0 200 191 24 48 chr11 81560179 81560263 -69223290 + (CAGAGA)n Simple_repeat Simple_repeat 1 82 0 250 326 68 23 chr11 81561391 81561523 -69222030 + L2 LINE L2 2945 3082 -190 300 288 45 22 chr11 81561693 81561851 -69221702 - MIR SINE MIR -26 182 17 290 370 32 16 chr11 81561898 81562144 -69221409 - L2 LINE L2 -344 2970 2721 2383 100 0 0 chr11 81562214 81562513 -69221040 - AluSg SINE Alu -11 299 1 340 303 0 76 chr11 81562549 81562566 -69220987 - MIR SINE MIR -118 144 127 1570 99 0 40 chr11 81562566 81562813 -69220740 + AluSq SINE Alu 69 306 0 340 303 0 76 chr11 81562813 81562926 -69220627 - MIR SINE MIR -135 127 23 2206 118 0 0 chr11 81563751 81564040 -69219513 - AluSq SINE Alu -17 296 8 306 331 90 24 chr11 81564050 81564216 -69219337 - L2 LINE L2 -250 3022 2846 399 281 173 0 chr11 81564309 81564494 -69219059 - MIR SINE MIR -5 257 41 3830 84 15 0 chr11 81564869 81565392 -69218161 - MER41A LTR ERV1 0 554 24 355 248 87 34 chr11 81565475 81565624 -69217929 - MER110A LTR ERV1 -276 192 36 347 183 44 9 chr11 81565980 81566084 -69217469 - MER39 LTR ERV1 0 658 457 813 150 8 8 chr11 81566113 81566240 -69217313 - AluJb SINE Alu -185 127 1 423 144 11 33 chr11 81566240 81566330 -69217223 - MER39 LTR ERV1 -97 610 523 22 25 0 25 chr11 81566335 81566361 -69217192 + AT_rich Low_complexity Low_complexity 1 27 -12 1544 134 0 5 chr11 81566361 81566584 -69216969 - AluSg/x SINE Alu -9 301 80 22 25 0 25 chr11 81566584 81566597 -69216956 + AT_rich Low_complexity Low_complexity 27 39 0 547 202 177 85 chr11 81566628 81566964 -69216589 - MER39 LTR ERV1 -174 533 1 472 272 52 15 chr11 81566964 81567100 -69216453 - MIR SINE MIR -100 162 22 191 354 139 0 chr11 81568606 81568750 -69214803 + MIR SINE MIR 45 208 -54 2010 142 29 32 chr11 81569061 81569435 -69214118 + L1MB7 LINE L1 5334 5706 -478 1756 138 30 13 chr11 81569442 81569746 -69213807 + L1MB7 LINE L1 5857 6165 -19 684 56 0 0 chr11 81570261 81570350 -69213203 + (GAAA)n Simple_repeat Simple_repeat 4 92 0 2425 96 0 0 chr11 81570381 81570683 -69212870 - AluSx SINE Alu -10 302 1 551 272 95 7 chr11 81570887 81571034 -69212519 - MIR3 SINE MIR -8 200 41 41817 43 4 7 chr11 81572277 81578446 -69205107 - L1PA4 LINE L1 -2 6153 7 2122 129 19 10 chr11 81579193 81579502 -69204051 - AluSx SINE Alu 0 312 1 1318 11 23 11 chr11 81580203 81580380 -69203173 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 318 50 0 0 chr11 81580380 81580420 -69203133 + (TTCC)n Simple_repeat Simple_repeat 2 41 0 1283 180 15 31 chr11 81580424 81580685 -69202868 - AluJb SINE Alu -1 311 55 517 260 122 62 chr11 81580746 81581107 -69202446 + L1MEd LINE L1 792 1130 -5180 2341 184 33 78 chr11 81581107 81581687 -69201866 - MLT2B3 LTR ERVL 0 554 1 517 260 122 62 chr11 81581687 81582013 -69201540 + L1MEd LINE L1 1130 1542 -4768 468 179 0 0 chr11 81582013 81582080 -69201473 - AluSp/q SINE Alu -52 261 195 1090 107 7 7 chr11 81582084 81582234 -69201319 - AluJb SINE Alu -162 150 1 22 0 0 0 chr11 81582283 81582305 -69201248 + AT_rich Low_complexity Low_complexity 1 22 0 * 2680 199 44 24 chr11 81582297 81582544 -69201009 - L1MDa LINE L1 -3221 3319 3078 2196 119 7 0 chr11 81582544 81582838 -69200715 - AluSx SINE Alu -16 296 1 2680 199 44 24 chr11 81582838 81583178 -69200375 - L1MDa LINE L1 -3462 3078 2746 1648 176 66 10 chr11 81583178 81583350 -69200203 - AluJo SINE Alu -7 305 109 252 0 0 0 chr11 81583350 81583378 -69200175 + (TG)n Simple_repeat Simple_repeat 1 28 0 1648 176 66 10 chr11 81583378 81583494 -69200059 - AluJo SINE Alu -203 109 1 2680 199 44 24 chr11 81583494 81583882 -69199671 - L1MDa LINE L1 -3794 2746 2319 180 0 0 0 chr11 81583882 81583902 -69199651 + (TA)n Simple_repeat Simple_repeat 1 20 0 2680 199 44 24 chr11 81583902 81583958 -69199595 - L1MDa LINE L1 -4221 2319 2266 2369 115 104 82 chr11 81583958 81584314 -69199239 - LTR64 LTR ERVK 0 558 184 2491 113 11 21 chr11 81584314 81584693 -69198860 + THE1C LTR MaLR 1 375 0 2369 115 104 82 chr11 81584693 81584882 -69198671 - LTR64 LTR ERVK -374 184 1 4221 181 67 16 chr11 81584882 81585848 -69197705 - L1MDa LINE L1 -4271 2269 1243 2104 141 10 0 chr11 81585848 81586138 -69197415 + AluSx SINE Alu 1 293 -19 4221 181 67 16 chr11 81586138 81586229 -69197324 - L1MDa LINE L1 -5297 1243 1158 2222 205 10 38 chr11 81586225 81586748 -69196805 - L1MDa LINE L1 -6029 511 4 * 487 312 6 0 chr11 81586828 81586998 -69196555 + HAL1 LINE L1 1433 1603 -904 404 217 231 56 chr11 81586998 81587141 -69196412 + L1ME3A LINE L1 5746 5913 -257 1246 230 63 44 chr11 81587169 81587552 -69196001 + LTR16A1 LTR ERVL 66 455 -2 465 334 64 29 chr11 81587554 81587931 -69195622 + HERV16 LTR ERVL 1 390 -4606 524 266 36 7 chr11 81588332 81588471 -69195082 - MIR SINE MIR -116 146 4 363 304 17 9 chr11 81588471 81588586 -69194967 + MIR SINE MIR 20 135 -73 363 158 206 55 chr11 81589300 81589421 -69194132 - MIR SINE MIR -57 151 12 337 261 131 45 chr11 81589559 81589735 -69193818 - MIR3 SINE MIR -11 197 7 255 279 95 34 chr11 81589690 81589837 -69193716 + MIR SINE MIR 28 183 -79 * 180 303 0 15 chr11 81590277 81590343 -69193210 + MIR3 SINE MIR 144 208 0 923 452 30 20 chr11 81590703 81591004 -69192549 - AluJb SINE Alu -8 304 1 4524 88 9 0 chr11 81591004 81591637 -69191916 - L1PA15 LINE L1 -126 6039 5401 2152 141 0 0 chr11 81592439 81592738 -69190815 - AluSx SINE Alu -12 300 2 2007 66 82 4 chr11 81592748 81593024 -69190529 - AluY SINE Alu 0 304 9 22 0 0 0 chr11 81593214 81593236 -69190317 + AT_rich Low_complexity Low_complexity 1 22 0 464 159 75 0 chr11 81593368 81593475 -69190078 - L2 LINE L2 -1597 1717 1603 1350 149 24 0 chr11 81593486 81593694 -69189859 - AluJb SINE Alu -14 298 86 780 263 153 14 chr11 81593695 81593976 -69189577 - L2 LINE L2 -1769 1545 1226 24 0 0 0 chr11 81594568 81594592 -69188961 + AT_rich Low_complexity Low_complexity 1 24 0 2211 98 3 0 chr11 81594592 81594877 -69188676 - AluSq SINE Alu -27 286 1 246 158 66 66 chr11 81594989 81595065 -69188488 - L1MC3 LINE L1 -1629 6156 6081 * 2138 206 64 20 chr11 81595045 81595435 -69188118 - L1ME1 LINE L1 -102 6458 6036 1920 194 0 0 chr11 81595435 81595745 -69187808 - AluJo SINE Alu -2 310 1 2138 206 64 20 chr11 81595745 81595902 -69187651 - L1ME1 LINE L1 -524 6036 5887 * 3881 221 31 13 chr11 81595900 81596603 -69186950 - L1ME1 LINE L1 -1231 5309 4580 1715 181 3 10 chr11 81596603 81596906 -69186647 - AluJo SINE Alu -11 301 1 3881 221 31 13 chr11 81596906 81597219 -69186334 - L1ME1 LINE L1 -1960 4580 4274 563 184 170 0 chr11 81597201 81597407 -69186146 - L1ME1 LINE L1 -3151 3389 3149 * 963 122 0 34 chr11 81597407 81597555 -69185998 + FLAM_C SINE Alu 1 143 0 3385 220 73 66 chr11 81597568 81598472 -69185081 - L1ME1 LINE L1 -3382 3158 2261 2345 113 0 0 chr11 81598472 81598783 -69184770 + AluSq SINE Alu 3 313 0 3385 220 73 66 chr11 81598783 81598899 -69184654 - L1ME1 LINE L1 -4279 2261 2147 1720 158 3 41 chr11 81598899 81599190 -69184363 + AluJo SINE Alu 1 280 -32 224 59 29 0 chr11 81599193 81599227 -69184326 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3385 220 73 66 chr11 81599227 81600236 -69183317 - L1ME1 LINE L1 -4394 2146 1114 2972 163 5 48 chr11 81600253 81600817 -69182736 + MER44D DNA MER2_type 9 603 -2 434 265 5 85 chr11 81600825 81601014 -69182539 - L1ME1 LINE L1 -5424 1106 933 266 292 13 32 chr11 81601034 81601243 -69182310 - L1ME1 LINE L1 -5876 654 3 810 282 121 28 chr11 81601468 81601890 -69181663 + LTR33A LTR ERVL 1 461 -62 451 167 0 62 chr11 81601890 81601986 -69181567 - FLAM_C SINE Alu 0 143 54 1224 187 0 87 chr11 81602012 81602333 -69181220 - AluJo SINE Alu -19 293 1 1608 121 0 0 chr11 81602584 81602799 -69180754 + AluSg/x SINE Alu 72 286 -24 201 27 0 81 chr11 81602799 81602809 -69180744 + (TA)n Simple_repeat Simple_repeat 1 10 -24 2388 70 0 0 chr11 81602809 81603135 -69180418 + AluY SINE Alu 1 326 0 201 27 0 81 chr11 81603135 81603160 -69180393 + (TA)n Simple_repeat Simple_repeat 10 34 0 197 274 12 71 chr11 81604185 81604269 -69179284 - MIR SINE MIR -70 192 114 363 44 0 0 chr11 81604792 81604837 -69178716 + (TG)n Simple_repeat Simple_repeat 2 46 0 399 236 31 39 chr11 81606244 81606371 -69177182 - MIR SINE MIR -70 192 67 619 273 30 18 chr11 81606988 81607153 -69176400 + MER91A DNA MER1_type 22 188 -8 212 320 115 0 chr11 81607202 81607280 -69176273 + L2 LINE L2 3140 3226 -46 565 238 8 0 chr11 81608330 81608452 -69175101 - MIR3 SINE MIR -20 188 66 186 103 0 0 chr11 81610999 81611028 -69172525 + (CGGA)n Simple_repeat Simple_repeat 2 30 0 440 232 45 68 chr11 81611632 81611809 -69171744 + MER104 DNA Tc2 7 179 -1 2476 92 0 6 chr11 81611840 81612154 -69171399 + AluSx SINE Alu 1 312 0 1620 175 4 0 chr11 81612344 81612613 -69170940 - AluJb SINE Alu 0 312 43 1638 186 0 17 chr11 81613006 81613297 -69170256 + AluJo SINE Alu 21 306 -6 1592 208 49 49 chr11 81613699 81614108 -69169445 - LTR2 LTR ERV1 0 449 41 2342 112 0 0 chr11 81614199 81614494 -69169059 - AluSq SINE Alu -18 295 1 185 381 38 62 chr11 81614727 81614887 -69168666 + L2 LINE L2 3065 3220 -52 2239 104 0 69 chr11 81614958 81615092 -69168461 + AluSx SINE Alu 1 143 -169 1343 55 0 0 chr11 81615092 81615256 -69168297 + L1PA3 LINE L1 5992 6155 0 2239 104 0 69 chr11 81615256 81615456 -69168097 + AluSx SINE Alu 143 312 0 845 99 0 8 chr11 81615829 81615960 -69167593 + (GAA)n Simple_repeat Simple_repeat 2 131 0 2027 148 23 0 chr11 81616710 81617015 -69166538 + AluSq SINE Alu 1 312 -1 509 163 8 31 chr11 81617026 81617155 -69166398 + A-rich Low_complexity Low_complexity 5 130 0 364 287 202 53 chr11 81617426 81617634 -69165919 + L3 LINE CR1 1144 1320 -257 2312 126 3 0 chr11 81617634 81617943 -69165610 + AluSx SINE Alu 1 310 -2 364 287 202 53 chr11 81617943 81618110 -69165443 + L3 LINE CR1 1320 1575 -2 1431 219 49 3 chr11 81618154 81618441 -69165112 + AluJo SINE Alu 1 300 -12 449 167 13 0 chr11 81619279 81619357 -69164196 - MER81 DNA DNA -4 110 32 963 145 0 0 chr11 81619471 81619602 -69163951 + AluSq/x SINE Alu 1 131 -181 259 250 33 22 chr11 81619630 81619722 -69163831 - MIR SINE MIR -94 114 22 180 361 16 0 chr11 81619786 81619847 -69163706 + L2 LINE L2 3123 3184 -88 180 333 9 46 chr11 81619997 81620105 -69163448 - MIR3 SINE MIR -40 168 65 375 242 44 13 chr11 81620612 81620759 -69162794 - MIR SINE MIR -62 146 23 2126 131 19 48 chr11 81620941 81621316 -69162237 + THE1B LTR MaLR 1 364 0 822 73 0 0 chr11 81621316 81621426 -69162127 + THE1B-int LTR MaLR 1 110 -1470 367 146 0 0 chr11 81621426 81621481 -69162072 + THE1B LTR MaLR 310 364 0 207 352 99 33 chr11 81621882 81622186 -69161367 - L2 LINE L2 -369 2945 2622 339 302 151 40 chr11 81622235 81622460 -69161093 - MIR SINE MIR -1 261 12 2030 118 43 0 chr11 81622475 81622755 -69160798 + AluSx SINE Alu 1 292 -20 594 313 198 16 chr11 81622875 81623319 -69160234 - L2 LINE L2 -1036 2278 1754 1788 191 3 0 chr11 81623340 81623660 -69159893 - MLT1A1 LTR MaLR 0 365 45 663 152 0 0 chr11 81623681 81623780 -69159773 - FLAM_A SINE Alu -16 126 28 23 0 0 0 chr11 81623799 81623822 -69159731 + AT_rich Low_complexity Low_complexity 1 23 0 1742 182 14 3 chr11 81623836 81624132 -69159421 - AluJo SINE Alu -13 299 1 281 111 22 0 chr11 81624136 81624181 -69159372 - MLT1A1 LTR MaLR -319 46 1 219 262 0 117 chr11 81624188 81624333 -69159220 - L2 LINE L2 -1597 1717 1590 227 281 50 33 chr11 81624500 81624634 -69158919 + MIR SINE MIR 8 167 -41 240 35 0 0 chr11 81624634 81624663 -69158890 + (T)n Simple_repeat Simple_repeat 1 29 0 208 284 12 37 chr11 81625611 81625692 -69157861 + MIR SINE MIR 13 91 -171 2317 95 0 0 chr11 81625708 81625992 -69157561 - AluSx SINE Alu -13 299 16 603 157 157 0 chr11 81626009 81626143 -69157410 - L1MB3 LINE L1 0 6183 6029 311 257 97 18 chr11 81627151 81627264 -69156289 + MIR SINE MIR 46 167 -95 * 971 168 152 0 chr11 81627255 81627452 -69156101 - MIR SINE MIR -21 241 15 215 311 136 19 chr11 81627529 81627632 -69155921 + MIR3 SINE MIR 41 155 -53 1758 147 35 25 chr11 81627924 81628210 -69155343 - AluJo SINE Alu -23 289 1 545 251 52 28 chr11 81628846 81629053 -69154500 - MIR SINE MIR -50 212 3 950 229 31 74 chr11 81629649 81629972 -69153581 + AluSg1 SINE Alu 1 309 0 579 273 21 71 chr11 81630536 81630774 -69152779 - MIR SINE MIR -1 261 36 481 328 105 0 chr11 81630817 81630988 -69152565 + MIR SINE MIR 74 262 0 26 0 0 0 chr11 81631226 81631252 -69152301 + AT_rich Low_complexity Low_complexity 1 26 0 1034 152 6 18 chr11 81631330 81631501 -69152052 + AluJb SINE Alu 1 169 -143 4588 115 104 77 chr11 81631501 81632967 -69150586 + pTR5 LTR ERV1 67 2429 -9 345 298 69 63 chr11 81633080 81633516 -69150037 - L1ME4a LINE L1 -86 6035 5599 1817 139 3 56 chr11 81634546 81634870 -69148683 + AluSx SINE Alu 1 307 -5 1596 213 33 6 chr11 81635172 81635661 -69147892 - L1M4 LINE L1 -2796 3350 2849 22 56 0 19 chr11 81635919 81635956 -69147597 + AT_rich Low_complexity Low_complexity 1 38 -15 2068 112 0 0 chr11 81635956 81636241 -69147312 + AluSx SINE Alu 1 285 -27 22 56 0 19 chr11 81636241 81636257 -69147296 + AT_rich Low_complexity Low_complexity 38 53 0 180 265 12 84 chr11 81636359 81636442 -69147111 + MIR3 SINE MIR 112 188 -20 328 290 226 0 chr11 81637229 81637384 -69146169 + MIR SINE MIR 63 252 -10 495 284 45 19 chr11 81637535 81637690 -69145863 - MIR SINE MIR -3 259 101 194 150 25 0 chr11 81638151 81638191 -69145362 + CT-rich Low_complexity Low_complexity 6 46 0 295 298 8 8 chr11 81638202 81638323 -69145230 + CT-rich Low_complexity Low_complexity 2 122 0 242 254 14 14 chr11 81639230 81639301 -69144252 + MIR SINE MIR 70 140 -68 2203 107 3 0 chr11 81639549 81639848 -69143705 + AluSx SINE Alu 1 300 -12 323 256 23 0 chr11 81640679 81640765 -69142788 - MIR SINE MIR 0 262 175 203 188 0 21 chr11 81640777 81640825 -69142728 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 436 214 17 0 chr11 81640954 81641071 -69142482 + (TCCA)n Simple_repeat Simple_repeat 1 119 0 213 295 122 29 chr11 81641131 81641270 -69142283 - L2 LINE L2 -91 3181 3030 255 330 27 18 chr11 81641832 81641944 -69141609 + MIR3 SINE MIR 90 202 -6 301 320 21 0 chr11 81641947 81642044 -69141509 - L2 LINE L2 0 3272 3174 347 245 88 0 chr11 81642105 81642207 -69141346 - MIR SINE MIR -69 193 83 2203 107 3 0 chr11 81642284 81642594 -69140959 - AluSx SINE Alu -1 311 1 304 278 0 0 chr11 81642600 81642688 -69140865 - MIR SINE MIR -61 147 68 332 350 53 0 chr11 81643039 81643245 -69140308 + L2 LINE L2 2819 3035 -237 768 247 134 13 chr11 81643315 81643546 -69140007 + MIR SINE MIR 4 262 0 435 244 121 7 chr11 81644232 81644388 -69139165 + MIR SINE MIR 36 206 -56 182 234 64 0 chr11 81644656 81644703 -69138850 + L3 LINE CR1 1511 1560 -17 * 185 261 0 0 chr11 81644675 81644721 -69138832 + MIR3 SINE MIR 160 205 -3 1618 184 27 3 chr11 81645665 81645959 -69137594 - AluJo SINE Alu -11 301 1 265 279 52 93 chr11 81646099 81646271 -69137282 - MER5A DNA MER1_type -9 180 16 231 88 0 0 chr11 81646318 81646352 -69137201 + (GGA)n Simple_repeat Simple_repeat 2 35 0 868 240 74 5 chr11 81646355 81646572 -69136981 - MIR SINE MIR -29 233 2 427 252 16 16 chr11 81646579 81646702 -69136851 - MIR3 SINE MIR -73 135 13 2313 81 0 0 chr11 81647049 81647344 -69136209 + AluY SINE Alu 1 295 -16 338 318 62 45 chr11 81647394 81647570 -69135983 - MIR SINE MIR -78 184 6 271 366 50 12 chr11 81647654 81647815 -69135738 - L2 LINE L2 -219 3053 2887 218 267 0 0 chr11 81647995 81648055 -69135498 - MIR SINE MIR -72 136 77 1958 117 52 0 chr11 81648212 81648503 -69135050 - AluSx SINE Alu -6 306 1 222 276 96 35 chr11 81649216 81649350 -69134203 + MIR SINE MIR 3 156 -52 216 0 0 0 chr11 81651577 81651601 -69131952 + (CA)n Simple_repeat Simple_repeat 2 25 0 2267 175 75 20 chr11 81651866 81652215 -69131338 - LTR32 LTR ERVL 0 471 92 2110 130 7 0 chr11 81652215 81652523 -69131030 + AluSx SINE Alu 1 310 -2 2267 175 75 20 chr11 81652523 81652612 -69130941 - LTR32 LTR ERVL -379 92 9 248 348 11 0 chr11 81652656 81652748 -69130805 + MIR SINE MIR 131 223 -39 21 36 0 0 chr11 81652876 81652904 -69130649 + AT_rich Low_complexity Low_complexity 1 28 0 3532 144 59 5 chr11 81652906 81653517 -69130036 - L1MA8 LINE L1 -4 6287 5644 551 168 120 74 chr11 81653569 81653620 -69129933 - L1MA3 LINE L1 0 6302 6255 2353 86 0 10 chr11 81653620 81653934 -69129619 - AluSq SINE Alu -2 311 1 551 168 120 74 chr11 81653934 81654127 -69129426 - L1MA3 LINE L1 -47 6255 6047 1508 113 188 0 chr11 81654128 81654393 -69129160 - AluSx SINE Alu 0 310 1 1762 146 4 0 chr11 81654409 81654684 -69128869 - AluSx SINE Alu -2 310 35 1260 135 27 0 chr11 81654684 81654941 -69128612 - L1MA3 LINE L1 -572 5728 5460 708 244 67 0 chr11 81655106 81655286 -69128267 - MIR SINE MIR -8 254 63 2166 115 0 13 chr11 81655488 81655802 -69127751 + AluSx SINE Alu 1 310 -2 466 194 116 64 chr11 81656663 81656858 -69126695 + MIR SINE MIR 16 210 -41 2080 110 10 0 chr11 81656863 81657155 -69126398 + AluSx SINE Alu 1 295 -17 1499 166 76 0 chr11 81657471 81657772 -69125781 - MER33 DNA MER1_type 0 324 1 1648 180 4 0 chr11 81657934 81658212 -69125341 - AluJo SINE Alu -19 293 15 298 325 60 9 chr11 81658215 81658347 -69125206 + MIR SINE MIR 17 156 -52 391 341 7 22 chr11 81658605 81658740 -69124813 - L2 LINE L2 -6 3266 3134 237 203 16 47 chr11 81659811 81659875 -69123678 - L3 LINE CR1 -109 1468 1407 1807 144 0 52 chr11 81659900 81659991 -69123562 - AluJb SINE Alu -3 309 215 3650 125 35 0 chr11 81659991 81660526 -69123027 - MER41C LTR ERV1 0 554 1 1807 144 0 52 chr11 81660526 81660615 -69122938 - AluJb SINE Alu -97 215 123 2201 105 0 0 chr11 81660615 81660911 -69122642 - AluSx SINE Alu -16 296 1 1807 144 0 52 chr11 81660911 81661055 -69122498 - AluJb SINE Alu -189 123 1 294 315 92 0 chr11 81661143 81661273 -69122280 + MIR SINE MIR 70 211 -51 578 260 13 32 chr11 81661317 81661471 -69122082 + MIR SINE MIR 17 167 -95 277 338 78 0 chr11 81661485 81661627 -69121926 + MIR SINE MIR 110 262 0 534 276 0 32 chr11 81661904 81662089 -69121464 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 203 336 26 0 chr11 81662172 81662288 -69121265 + (ATGGTG)n Simple_repeat Simple_repeat 6 124 0 1942 134 34 0 chr11 81662846 81663137 -69120416 + AluSq SINE Alu 1 301 -12 248 238 32 0 chr11 81663446 81663509 -69120044 + MIR3 SINE MIR 101 165 -43 475 293 31 47 chr11 81663648 81663839 -69119714 + MIR SINE MIR 21 208 -54 1731 148 3 50 chr11 81664067 81664384 -69119169 + AluJo SINE Alu 1 302 -10 193 271 82 47 chr11 81665577 81665662 -69117891 + MIR SINE MIR 32 119 -89 185 335 67 31 chr11 81666415 81666609 -69116944 + L2 LINE L2 2903 3103 -169 437 293 146 28 chr11 81666659 81666871 -69116682 - L2 LINE L2 -1 3312 3076 322 291 19 0 chr11 81666983 81667086 -69116467 + (GAATG)n Simple_repeat Simple_repeat 3 107 0 295 313 15 30 chr11 81667121 81667166 -69116387 + (GAATG)n Simple_repeat Simple_repeat 3 47 -87 1694 144 43 0 chr11 81667166 81667444 -69116109 + AluSx SINE Alu 1 290 -22 295 313 15 30 chr11 81667444 81667532 -69116021 + (GAATG)n Simple_repeat Simple_repeat 47 134 0 250 255 28 97 chr11 81668353 81668498 -69115055 + L3 LINE CR1 1408 1542 -35 398 266 109 1 chr11 81669445 81669576 -69113977 - MIR SINE MIR -62 146 51 237 250 200 20 chr11 81670720 81670820 -69112733 - L3 LINE CR1 -107 1470 1353 1933 109 53 3 chr11 81671250 81671535 -69112018 + AluSq SINE Alu 1 299 -14 227 336 94 13 chr11 81671703 81671852 -69111701 - L2 LINE L2 -198 3074 2914 219 326 112 23 chr11 81671889 81672104 -69111449 - L2 LINE L2 -460 2854 2621 298 214 14 0 chr11 81672120 81672190 -69111363 - L2 LINE L2 -2 3270 3200 400 276 47 23 chr11 81672598 81672782 -69110771 + MIR SINE MIR 2 195 -59 186 250 16 62 chr11 81672734 81672798 -69110755 - MIR SINE MIR -15 247 187 * 311 274 103 8 chr11 81672895 81673012 -69110541 - MIR SINE MIR -63 145 18 380 272 67 3 chr11 81674919 81675089 -69108464 - MIR SINE MIR -60 148 13 4333 168 99 10 chr11 81675408 81675419 -69108134 - MER21B LTR ERV1 -2 861 852 2198 95 13 0 chr11 81675419 81675725 -69107828 - AluSx SINE Alu -2 310 1 4333 168 99 10 chr11 81675725 81676504 -69107049 - MER21B LTR ERV1 -11 852 1 499 279 184 0 chr11 81676692 81676893 -69106660 + MIR SINE MIR 13 250 -12 183 272 111 0 chr11 81677423 81677504 -69106049 - L2 LINE L2 -50 3222 3133 401 194 82 10 chr11 81677996 81678094 -69105459 - MIR SINE MIR -59 149 45 348 238 164 0 chr11 81678151 81678273 -69105280 + MIR3 SINE MIR 7 148 -60 402 288 34 0 chr11 81679052 81679170 -69104383 + MIR SINE MIR 31 152 -56 313 303 127 14 chr11 81680717 81680859 -69102694 - HAL1b LINE L1 -596 752 595 397 255 20 0 chr11 81680898 81680996 -69102557 - MIR SINE MIR -109 153 54 575 215 185 15 chr11 81681001 81681206 -69102347 - MER69 DNA AcHobo -13 2513 2274 * 2275 198 57 69 chr11 81681198 81681790 -69101763 - MER69 DNA AcHobo -640 586 2 223 295 6 131 chr11 81682280 81682463 -69101090 + L2 LINE L2 2884 3043 -229 553 253 42 36 chr11 81682697 81682863 -69100690 + MIR SINE MIR 36 202 -60 397 296 128 59 chr11 81683276 81683715 -69099838 - L2 LINE L2 0 3272 2804 213 372 39 8 chr11 81683800 81683929 -69099624 - L2 LINE L2 -575 2739 2607 392 333 50 9 chr11 81683950 81684169 -69099384 - L2 LINE L2 -216 3056 2829 343 222 0 0 chr11 81684405 81684477 -69099076 - MIR SINE MIR -109 153 82 382 286 91 13 chr11 81684716 81684870 -69098683 + MIR SINE MIR 31 196 -66 1064 217 37 71 chr11 81684880 81684915 -69098638 - MLT1F1 LTR MaLR -5 562 527 1612 180 0 71 chr11 81684915 81685237 -69098316 + AluJb SINE Alu 6 304 -8 1064 217 37 71 chr11 81685237 81685496 -69098057 - MLT1F1 LTR MaLR -40 527 278 778 224 6 6 chr11 81685499 81685660 -69097893 - MLT1F1 LTR MaLR -381 161 1 210 308 0 0 chr11 81685660 81685712 -69097841 + L2 LINE L2 3251 3302 -11 420 301 193 26 chr11 81686014 81686402 -69097151 + MLT1L LTR MaLR 146 598 -17 431 217 43 0 chr11 81686467 81686582 -69096971 + MIR3 SINE MIR 3 122 -86 630 268 0 0 chr11 81686587 81686747 -69096806 - MIR SINE MIR -1 261 103 208 328 0 0 chr11 81686782 81686846 -69096707 + MIR3 SINE MIR 136 199 -9 588 229 100 18 chr11 81686882 81687052 -69096501 + L3 LINE CR1 1205 1388 -189 208 186 68 17 chr11 81687854 81687913 -69095640 + L2 LINE L2 2994 3055 -217 2244 99 3 10 chr11 81688302 81688606 -69094947 + AluSc SINE Alu 1 302 -7 443 325 48 32 chr11 81689304 81689492 -69094061 + MIR3 SINE MIR 9 199 -9 393 253 20 10 chr11 81689505 81689604 -69093949 - MIR SINE MIR -92 116 17 198 169 89 0 chr11 81689831 81689876 -69093677 - MIR SINE MIR -86 122 73 186 359 53 24 chr11 81690060 81690230 -69093323 + L2 LINE L2 2917 3091 -181 404 288 30 0 chr11 81690380 81690391 -69093162 + (TGGA)n Simple_repeat Simple_repeat 4 13 -126 2251 123 0 3 chr11 81690391 81690691 -69092862 + AluSq SINE Alu 1 299 -14 404 288 30 0 chr11 81690691 81690811 -69092742 + (TGGA)n Simple_repeat Simple_repeat 13 139 0 296 413 12 0 chr11 81690728 81690900 -69092653 + (TGGG)n Simple_repeat Simple_repeat 3 176 0 * 1394 110 29 5 chr11 81690980 81691189 -69092364 + L1PA10 LINE L1 5909 6122 -46 423 370 22 0 chr11 81691359 81691543 -69092010 + L3 LINE CR1 900 1087 -490 1751 168 27 94 chr11 81691588 81691994 -69091559 + MSTD LTR MaLR 16 394 -2 526 360 111 6 chr11 81692038 81692399 -69091154 + L3 LINE CR1 1174 1572 -5 343 314 73 78 chr11 81693220 81693644 -69089909 - L2 LINE L2 -41 3231 2810 917 142 0 0 chr11 81694653 81694773 -69088780 + FLAM_C SINE Alu 1 120 -23 228 35 0 0 chr11 81694773 81694802 -69088751 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 230 266 43 21 chr11 81694825 81694919 -69088634 - LTR67 LTR ERVL -22 535 440 2571 80 8 3 chr11 81695456 81695819 -69087734 - L1PA13 LINE L1 0 6163 5799 522 275 15 0 chr11 81695826 81695957 -69087596 - MIR SINE MIR -77 185 53 405 224 105 40 chr11 81696056 81696208 -69087345 + L1ME4a LINE L1 5960 6121 0 1001 140 7 7 chr11 81696220 81696403 -69087150 - FRAM SINE Alu 0 180 1 1747 168 0 75 chr11 81696410 81696605 -69086948 - AluJb SINE Alu -3 309 148 2117 125 0 3 chr11 81696605 81696894 -69086659 - AluSx SINE Alu -24 288 1 1747 168 0 75 chr11 81696894 81697032 -69086521 - AluJb SINE Alu -164 148 1 308 189 198 0 chr11 81697081 81697187 -69086366 + L1ME4a LINE L1 5956 6082 -39 23 54 0 0 chr11 81697192 81697229 -69086324 + AT_rich Low_complexity Low_complexity 1 37 0 1944 185 0 3 chr11 81697237 81697550 -69086003 + AluSx SINE Alu 1 312 0 209 259 12 47 chr11 81698213 81698298 -69085255 + CT-rich Low_complexity Low_complexity 3 84 0 196 313 0 0 chr11 81698761 81698825 -69084728 - L3 LINE CR1 -109 1468 1405 262 249 97 74 chr11 81698830 81699047 -69084506 - L2 LINE L2 -22 3250 3029 1111 293 144 19 chr11 81699086 81699710 -69083843 + L2 LINE L2 2195 2896 -418 2073 121 25 0 chr11 81700028 81700310 -69083243 - AluSx SINE Alu -19 293 5 360 282 86 26 chr11 81700828 81700948 -69082605 + MIR SINE MIR 25 166 -96 783 171 33 0 chr11 81700948 81701100 -69082453 + L1PB4 LINE L1 6000 6156 0 360 282 86 26 chr11 81701100 81701188 -69082365 + MIR SINE MIR 166 247 -15 690 311 99 62 chr11 81701215 81701574 -69081979 - L3 LINE CR1 -733 844 459 2310 99 0 0 chr11 81701574 81701867 -69081686 + AluSx SINE Alu 1 293 -19 690 311 99 62 chr11 81701867 81702022 -69081531 - L3 LINE CR1 -1118 459 311 2529 11 4 0 chr11 81702466 81702739 -69080814 + AluYa5 SINE Alu 36 309 -2 565 208 47 75 chr11 81703048 81703176 -69080377 + MIR SINE MIR 2 132 -130 1867 160 0 7 chr11 81703176 81703464 -69080089 - AluJb SINE Alu -21 291 6 565 208 47 75 chr11 81703464 81703484 -69080069 + MIR SINE MIR 132 151 -111 2260 104 10 3 chr11 81703484 81703783 -69079770 + AluSx SINE Alu 1 301 -11 565 208 47 75 chr11 81703783 81703845 -69079708 + MIR SINE MIR 151 207 -55 299 337 0 96 chr11 81704589 81704767 -69078786 + MIR SINE MIR 85 245 -17 209 205 0 0 chr11 81704772 81704811 -69078742 + CT-rich Low_complexity Low_complexity 3 41 0 1789 166 7 14 chr11 81706625 81706915 -69076638 + AluJo SINE Alu 1 288 -24 186 167 0 0 chr11 81706915 81706951 -69076602 + (CAAG)n Simple_repeat Simple_repeat 4 39 0 211 200 12 38 chr11 81707526 81707606 -69075947 + (CACCAT)n Simple_repeat Simple_repeat 4 81 0 635 269 82 45 chr11 81707788 81708119 -69075434 + MLT1J LTR MaLR 167 509 -2 861 228 95 30 chr11 81708778 81709175 -69074378 - MLT1H LTR MaLR 0 588 104 271 318 99 11 chr11 81709524 81709654 -69073899 + MIR SINE MIR 13 133 -75 315 130 0 0 chr11 81709879 81709933 -69073620 + (GGGAA)n Simple_repeat Simple_repeat 4 57 0 220 338 6 32 chr11 81710124 81710281 -69073272 - MIR3 SINE MIR -9 199 47 1451 95 5 20 chr11 81710945 81711145 -69072408 - AluY SINE Alu -114 197 1 242 312 5 48 chr11 81711840 81711979 -69071574 + MIR SINE MIR 41 174 -60 233 200 57 36 chr11 81715838 81715978 -69067575 + (CGCTG)n Simple_repeat Simple_repeat 3 145 0 226 243 29 29 chr11 81716120 81716256 -69067297 + (CCGCG)n Simple_repeat Simple_repeat 5 140 0 39 22 0 0 chr11 81716532 81716578 -69066975 + GC_rich Low_complexity Low_complexity 1 46 0 229 229 16 16 chr11 81718242 81718303 -69065250 + L3b LINE CR1 1323 1383 -200 237 326 121 21 chr11 81719259 81719400 -69064153 + L3 LINE CR1 876 1030 -547 348 352 153 7 chr11 81719689 81719970 -69063583 - L2 LINE L2 -96 3176 2855 191 315 0 0 chr11 81720151 81720205 -69063348 - L2 LINE L2 -38 3234 3181 185 313 24 36 chr11 81720710 81720793 -69062760 + MIR3 SINE MIR 11 92 -116 296 195 146 0 chr11 81720806 81720888 -69062665 - L2 LINE L2 -15 3298 3205 280 283 35 35 chr11 81721210 81721355 -69062198 - MIR3 SINE MIR -19 189 45 307 234 65 0 chr11 81721812 81721889 -69061664 + MER94 DNA DNA 20 101 -33 2168 107 44 3 chr11 81721889 81722187 -69061366 + AluSp SINE Alu 1 310 -3 202 309 24 32 chr11 81722311 81722437 -69061116 + L2 LINE L2 2849 2973 -299 783 203 18 6 chr11 81722913 81723076 -69060477 - FRAM SINE Alu -1 165 1 335 198 0 66 chr11 81723296 81723387 -69060166 - L2 LINE L2 -1 3271 3187 1992 150 0 6 chr11 81723390 81723703 -69059850 + AluJb SINE Alu 1 311 -1 931 256 43 0 chr11 81723741 81723975 -69059578 - MIR SINE MIR 0 262 19 336 267 118 27 chr11 81724001 81724188 -69059365 - L2 LINE L2 -185 3128 2925 241 344 97 47 chr11 81724291 81724464 -69059089 + L2 LINE L2 2599 2762 -510 524 203 25 34 chr11 81724464 81724614 -69058939 + FLAM_C SINE Alu 1 149 0 241 344 97 47 chr11 81724614 81724845 -69058708 + L2 LINE L2 2762 3023 -249 2231 106 33 3 chr11 81724845 81725148 -69058405 + AluSx SINE Alu 1 312 0 190 354 16 47 chr11 81725312 81725363 -69058190 + L2 LINE L2 3133 3184 -88 2425 97 0 0 chr11 81725363 81725673 -69057880 - AluSx SINE Alu -2 310 1 190 354 16 47 chr11 81725673 81725748 -69057805 + L2 LINE L2 3184 3255 -17 244 158 66 66 chr11 81725785 81725861 -69057692 - L1MC3 LINE L1 -1629 6156 6081 * 2179 215 60 16 chr11 81725841 81726231 -69057322 - L1ME1 LINE L1 -102 6458 6036 1919 194 0 0 chr11 81726231 81726541 -69057012 - AluJo SINE Alu -2 310 1 2179 215 60 16 chr11 81726541 81726698 -69056855 - L1ME1 LINE L1 -524 6036 5887 * 3910 218 31 13 chr11 81726696 81727399 -69056154 - L1ME1 LINE L1 -1231 5309 4580 1718 181 3 10 chr11 81727399 81727702 -69055851 - AluJo SINE Alu -11 301 1 3910 218 31 13 chr11 81727702 81728015 -69055538 - L1ME1 LINE L1 -1960 4580 4274 555 180 170 0 chr11 81727997 81728203 -69055350 - L1ME1 LINE L1 -3151 3389 3149 * 963 122 0 34 chr11 81728203 81728351 -69055202 + FLAM_C SINE Alu 1 143 0 3438 222 71 64 chr11 81728364 81729268 -69054285 - L1ME1 LINE L1 -3382 3158 2261 2356 113 0 0 chr11 81729268 81729579 -69053974 + AluSq SINE Alu 3 313 0 3438 222 71 64 chr11 81729579 81729695 -69053858 - L1ME1 LINE L1 -4279 2261 2147 1728 158 3 41 chr11 81729695 81729986 -69053567 + AluJo SINE Alu 1 280 -32 224 59 29 0 chr11 81729989 81730023 -69053530 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3438 222 71 64 chr11 81730023 81731036 -69052517 - L1ME1 LINE L1 -4394 2146 1114 3027 162 3 53 chr11 81731049 81731617 -69051936 + MER44D DNA MER2_type 9 603 -2 440 269 5 83 chr11 81731621 81731814 -69051739 - L1ME1 LINE L1 -5420 1110 933 280 292 13 32 chr11 81731834 81732043 -69051510 - L1ME1 LINE L1 -5876 654 3 884 280 121 28 chr11 81732268 81732690 -69050863 + LTR33A LTR ERVL 1 461 -62 459 146 0 62 chr11 81732690 81732786 -69050767 - FLAM_A SINE Alu 0 142 53 1719 153 0 64 chr11 81732810 81733124 -69050429 - AluJo SINE Alu -18 294 1 1594 126 0 0 chr11 81733375 81733590 -69049963 + AluSg/x SINE Alu 72 286 -24 201 27 0 81 chr11 81733590 81733600 -69049953 + (TA)n Simple_repeat Simple_repeat 1 10 -24 2410 70 0 0 chr11 81733600 81733922 -69049631 + AluY SINE Alu 1 322 0 201 27 0 81 chr11 81733922 81733947 -69049606 + (TA)n Simple_repeat Simple_repeat 10 34 0 195 298 0 60 chr11 81734972 81735056 -69048497 - MIR SINE MIR -70 192 114 345 47 0 0 chr11 81735579 81735622 -69047931 + (TG)n Simple_repeat Simple_repeat 2 44 0 394 244 30 38 chr11 81737025 81737156 -69046397 - MIR SINE MIR -66 196 67 575 273 30 18 chr11 81737773 81737938 -69045615 + MER91A DNA MER1_type 22 188 -8 205 329 57 0 chr11 81737995 81738065 -69045488 + L2 LINE L2 3153 3226 -46 542 238 8 0 chr11 81739115 81739237 -69044316 - MIR3 SINE MIR -20 188 66 186 103 0 0 chr11 81741782 81741811 -69041742 + (CGGA)n Simple_repeat Simple_repeat 2 30 0 451 232 45 68 chr11 81742415 81742592 -69040961 + MER104 DNA Tc2 7 179 -1 2342 92 0 6 chr11 81742623 81742937 -69040616 + AluSx SINE Alu 1 312 0 632 253 148 5 chr11 81744044 81744246 -69039307 - MIR SINE MIR -22 240 10 1684 157 0 62 chr11 81744600 81744749 -69038804 + AluSx SINE Alu 1 121 -191 2309 88 0 0 chr11 81744749 81745045 -69038508 + AluSg1 SINE Alu 1 296 -13 1684 157 0 62 chr11 81745045 81745220 -69038333 + AluSx SINE Alu 121 305 -7 215 303 61 20 chr11 81745439 81745538 -69038015 + L2 LINE L2 3169 3271 -1 199 204 23 0 chr11 81745988 81746032 -69037521 + L3 LINE CR1 1530 1574 -3 288 203 116 0 chr11 81746802 81746871 -69036682 + MIR3 SINE MIR 110 186 -22 335 331 0 16 chr11 81747049 81747173 -69036380 + GA-rich Low_complexity Low_complexity 2 123 0 2341 73 0 3 chr11 81748900 81749200 -69034353 + AluY SINE Alu 1 299 -12 1749 156 7 14 chr11 81749212 81749500 -69034053 + AluJo SINE Alu 4 289 -23 1970 122 0 0 chr11 81749500 81749831 -69033722 - AluSx SINE Alu 0 345 15 300 349 121 0 chr11 81750057 81750223 -69033330 + MIR SINE MIR 21 206 -56 449 219 95 0 chr11 81752278 81752383 -69031170 + MIR3 SINE MIR 81 195 -13 350 345 0 9 chr11 81753532 81753645 -69029908 + L2 LINE L2 3197 3308 -5 702 233 29 94 chr11 81753923 81754059 -69029494 + MIR SINE MIR 33 148 -114 2020 144 0 3 chr11 81754059 81754371 -69029182 - AluSx SINE Alu 0 312 2 702 233 29 94 chr11 81754371 81754479 -69029074 + MIR SINE MIR 148 261 -1 180 264 38 0 chr11 81755587 81755640 -69027913 - MIR3 SINE MIR -32 176 122 258 225 70 0 chr11 81755910 81755981 -69027572 - MIR SINE MIR -76 186 111 253 167 60 2 chr11 81755997 81756052 -69027501 + MIR SINE MIR 99 156 -52 1926 191 110 22 chr11 81756677 81757139 -69026414 + MLT1D LTR MaLR 1 503 -2 186 258 152 0 chr11 81758887 81758953 -69024600 + MIR SINE MIR 77 152 -110 806 277 57 38 chr11 81758959 81759025 -69024528 - MER46C DNA MER2_type -18 320 257 1873 139 4 0 chr11 81759025 81759327 -69024226 + AluSx SINE Alu 1 303 0 806 277 57 38 chr11 81759327 81759573 -69023980 - MER46C DNA MER2_type -81 257 1 236 239 18 124 chr11 81759574 81759687 -69023866 + MIR SINE MIR 154 254 -8 1877 111 39 23 chr11 81760654 81760961 -69022592 - AluSx SINE Alu 0 312 1 703 256 6 0 chr11 81760961 81761125 -69022428 + MER20 DNA MER1_type 55 219 0 464 282 35 14 chr11 81761268 81761410 -69022143 + MIR SINE MIR 21 165 -97 339 181 69 0 chr11 81761973 81762045 -69021508 - MIR SINE MIR -79 183 107 2179 106 0 19 chr11 81762247 81762559 -69020994 - AluSq SINE Alu -7 306 1 552 218 28 7 chr11 81762566 81762708 -69020845 - L1MA8 LINE L1 -3 6288 6144 1862 125 82 0 chr11 81763007 81763287 -69020266 - AluSx SINE Alu -9 303 1 503 270 29 78 chr11 81763355 81763559 -69019994 + MER117 DNA MER1_type 2 195 -2 182 333 83 48 chr11 81763720 81763948 -69019605 + L2 LINE L2 3022 3257 -15 549 277 248 17 chr11 81764754 81764982 -69018571 + L2 LINE L2 2814 2988 -325 1549 148 6 85 chr11 81764982 81765299 -69018254 - AluJb SINE Alu -20 292 1 549 277 248 17 chr11 81765299 81765464 -69018089 + L2 LINE L2 2988 3114 -199 1883 123 56 0 chr11 81765464 81765748 -69017805 + AluSg SINE Alu 1 300 -10 207 69 0 0 chr11 81765795 81765824 -69017729 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 201 276 152 19 chr11 81765824 81765929 -69017624 - MIR SINE MIR -56 152 34 2189 104 0 3 chr11 81766527 81766835 -69016718 - AluSx SINE Alu -5 307 1 508 318 18 29 chr11 81767202 81767372 -69016181 - MIR SINE MIR -75 187 20 216 216 0 39 chr11 81767680 81767731 -69015822 - MIR SINE MIR -65 143 95 318 281 59 15 chr11 81768592 81768653 -69014900 - MER112 DNA MER1_type -1 259 202 2003 100 0 53 chr11 81768653 81769003 -69014550 + AluSx SINE Alu 1 334 0 318 281 59 15 chr11 81769003 81769075 -69014478 - MER112 DNA MER1_type -58 202 119 1029 273 111 26 chr11 81769075 81769269 -69014284 + MLT1I LTR MaLR 1 177 -232 2220 181 30 79 chr11 81769269 81769336 -69014217 - MLT1D LTR MaLR 0 505 436 1986 145 7 0 chr11 81769336 81769639 -69013914 + AluJb SINE Alu 1 305 -7 2220 181 30 79 chr11 81769639 81770100 -69013453 - MLT1D LTR MaLR -69 436 3 1029 273 111 26 chr11 81770100 81770282 -69013271 + MLT1I LTR MaLR 177 409 0 2232 117 0 3 chr11 81770295 81770603 -69012950 + AluSx SINE Alu 1 307 -5 316 262 107 0 chr11 81770603 81770706 -69012847 - MER112 DNA MER1_type -146 114 1 1807 123 60 3 chr11 81771069 81771353 -69012200 - AluSg SINE Alu -10 300 1 334 289 55 8 chr11 81771354 81771482 -69012071 + L1ME4a LINE L1 5791 5924 -197 2005 208 28 19 chr11 81771506 81771973 -69011580 + L1M4 LINE L1 4524 4994 -1152 2362 84 3 0 chr11 81771976 81772284 -69011269 + AluSx SINE Alu 1 309 -3 2377 28 0 11 chr11 81772414 81772697 -69010856 - AluY SINE Alu -31 280 1 1873 152 0 23 chr11 81773920 81774230 -69009323 + AluJo SINE Alu 1 303 -9 867 288 33 87 chr11 81774436 81774978 -69008575 - MER34 LTR ERV1 -29 513 1 270 317 56 14 chr11 81774979 81775121 -69008432 + L1M4 LINE L1 5504 5651 -527 2070 132 0 0 chr11 81775216 81775519 -69008034 + AluSx SINE Alu 1 303 -9 767 179 26 103 chr11 81775541 81775608 -69007945 - Charlie2 DNA MER1_type -80 2782 2711 2254 84 7 0 chr11 81775608 81775905 -69007648 - AluY SINE Alu -12 299 1 767 179 26 103 chr11 81775905 81776110 -69007443 - Charlie2 DNA MER1_type -151 2711 2531 2290 102 0 0 chr11 81776309 81776612 -69006941 + AluSq SINE Alu 1 303 -10 2036 110 11 0 chr11 81776724 81777026 -69006527 - AluSx SINE Alu 0 305 1 21 0 0 0 chr11 81777035 81777056 -69006497 + AT_rich Low_complexity Low_complexity 1 21 0 301 264 50 57 chr11 81777069 81777209 -69006344 - MIR SINE MIR -3 259 121 1084 165 28 76 chr11 81777775 81777840 -69005713 - MER33 DNA MER1_type -2286 299 232 2152 114 3 0 chr11 81777840 81778147 -69005406 + AluSx SINE Alu 1 308 -4 2192 78 7 0 chr11 81778156 81778449 -69005104 + AluSq SINE Alu 1 295 -18 1084 165 28 76 chr11 81778449 81778664 -69004889 - MER33 DNA MER1_type -2361 224 23 811 192 5 73 chr11 81778882 81779101 -69004452 + AluJo SINE Alu 1 204 -108 237 121 0 0 chr11 81779105 81779138 -69004415 + Alu SINE Alu 88 120 -13 228 273 34 0 chr11 81779149 81779237 -69004316 + L1MC4 LINE L1 6613 6703 -1339 328 247 104 0 chr11 81779239 81779316 -69004237 - L1MC4 LINE L1 -1343 6699 6615 940 155 0 12 chr11 81779316 81779477 -69004076 + FRAM SINE Alu 18 176 0 2141 122 0 6 chr11 81779706 81780018 -69003535 + AluSx SINE Alu 3 312 0 551 218 0 24 chr11 81780061 81780185 -69003368 + MIR SINE MIR 77 197 -65 302 281 108 36 chr11 81780518 81780558 -69002995 - MIR SINE MIR -3 259 223 2214 86 0 35 chr11 81780558 81780873 -69002680 - AluY SINE Alu -7 304 1 302 281 108 36 chr11 81780873 81780971 -69002582 - MIR SINE MIR -39 223 111 236 296 23 11 chr11 81781501 81781589 -69001964 + MIR SINE MIR 35 123 -139 189 239 0 22 chr11 81781622 81781668 -69001885 + MIR SINE MIR 218 262 0 575 309 97 45 chr11 81781754 81782054 -69001499 + L1MC4a LINE L1 5564 5847 -1961 1688 153 57 23 chr11 81782054 81782354 -69001199 + AluJb SINE Alu 3 312 0 575 309 97 45 chr11 81782354 81782382 -69001171 + L1MC4a LINE L1 5847 5872 -1936 2078 115 0 22 chr11 81782382 81782694 -69000859 - AluSq SINE Alu -6 307 3 575 309 97 45 chr11 81782694 81782785 -69000768 + L1MC4a LINE L1 5872 6006 -1802 180 0 0 0 chr11 81782857 81782877 -69000676 + (T)n Simple_repeat Simple_repeat 1 20 0 2398 84 0 0 chr11 81782977 81783285 -69000268 + AluSx SINE Alu 5 312 0 3972 169 37 44 chr11 81783288 81783481 -69000072 + L1MB7 LINE L1 4993 5186 -998 1374 36 6 0 chr11 81783481 81783648 -68999905 + L1PA6 LINE L1 5987 6154 0 3972 169 37 44 chr11 81783648 81784632 -68998921 + L1MB7 LINE L1 5186 6168 -16 458 303 43 67 chr11 81784991 81785245 -68998308 + L2 LINE L2 3019 3266 -6 2284 88 7 0 chr11 81785317 81785625 -68997928 + AluSg SINE Alu 1 310 0 1015 222 23 5 chr11 81785668 81785889 -68997664 - MIR SINE MIR -36 226 2 2577 62 37 8 chr11 81785941 81786386 -68997167 + AluY SINE Alu 1 308 -3 2072 107 0 17 chr11 81786210 81786549 -68997004 + AluSc SINE Alu 2 294 -15 208 308 29 29 chr11 81787315 81787419 -68996134 - MIR3 SINE MIR -18 190 87 278 307 117 15 chr11 81787960 81788097 -68995456 + MIR SINE MIR 20 170 -92 249 33 0 0 chr11 81788379 81788409 -68995144 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2157 93 0 0 chr11 81788411 81788689 -68994864 - AluSx SINE Alu -30 282 5 226 342 52 13 chr11 81788742 81788897 -68994656 + L2 LINE L2 2943 3103 -169 214 304 0 0 chr11 81788897 81788953 -68994600 + CT-rich Low_complexity Low_complexity 3 58 0 224 136 45 0 chr11 81789312 81789356 -68994197 + L2 LINE L2 3267 3312 -1 476 202 11 0 chr11 81789868 81789957 -68993596 - MER63B DNA MER1_type -4 432 343 1075 149 56 47 chr11 81789961 81790175 -68993378 + MER20 DNA MER1_type 4 219 0 790 150 63 0 chr11 81790178 81790305 -68993248 + FLAM_C SINE Alu 6 140 -3 1154 170 61 102 chr11 81790334 81790403 -68993150 - MER63B DNA MER1_type -734 328 258 1937 114 0 66 chr11 81790403 81790737 -68992816 - AluSx SINE Alu 0 312 1 1154 170 61 102 chr11 81790737 81791009 -68992544 - MER63B DNA MER1_type -804 258 1 204 295 49 0 chr11 81791937 81791998 -68991555 - MIR3 SINE MIR -52 156 93 2142 105 0 3 chr11 81793856 81794150 -68989403 + AluSg SINE Alu 1 293 -17 696 226 0 0 chr11 81794166 81794290 -68989263 - FLAM_A SINE Alu -8 125 2 277 312 176 6 chr11 81794326 81794496 -68989057 - MIR SINE MIR -44 218 20 235 321 24 0 chr11 81795725 81795809 -68987744 - L2 LINE L2 -46 3226 3141 2184 114 3 0 chr11 81796447 81796753 -68986800 + AluSq SINE Alu 1 307 -6 242 306 74 19 chr11 81796820 81796928 -68986625 - L2 LINE L2 -222 3050 2937 339 276 67 30 chr11 81797849 81797913 -68985640 - MIR SINE MIR -32 230 170 2308 195 62 15 chr11 81797913 81798394 -68985159 + MLT1D LTR MaLR 1 504 -1 339 276 67 30 chr11 81798394 81798463 -68985090 - MIR SINE MIR -92 170 92 2079 115 7 0 chr11 81798463 81798758 -68984795 + AluSx SINE Alu 1 297 -15 310 273 76 23 chr11 81799093 81799225 -68984328 - MIR SINE MIR -66 196 58 180 313 31 0 chr11 81799271 81799335 -68984218 - MIR SINE MIR -16 246 181 181 333 29 14 chr11 81799387 81799525 -68984028 + L2 LINE L2 2798 2937 -377 1918 118 17 20 chr11 81800003 81800299 -68983254 - AluJb SINE Alu -17 295 1 180 0 0 0 chr11 81800444 81800464 -68983089 + (CCA)n Simple_repeat Simple_repeat 2 21 0 4427 149 118 1 chr11 81800494 81801298 -68982255 - MER54A LTR ERVL 0 901 4 2185 90 10 0 chr11 81801442 81801732 -68981821 + AluSx SINE Alu 5 297 -15 586 242 0 8 chr11 81802028 81802152 -68981401 + FLAM_C SINE Alu 2 124 -9 26 0 0 0 chr11 81802152 81802178 -68981375 + AT_rich Low_complexity Low_complexity 1 26 0 2092 113 0 10 chr11 81802178 81802480 -68981073 + AluSg SINE Alu 1 299 -11 240 299 31 10 chr11 81802990 81803087 -68980466 + L2 LINE L2 3180 3278 -35 319 306 31 11 chr11 81803111 81803286 -68980267 - MIR SINE MIR -32 230 52 310 149 0 0 chr11 81803287 81803334 -68980219 - MER45 DNA AcHobo -1 1580 1534 618 189 42 78 chr11 81803410 81803540 -68980013 - MER5A DNA MER1_type 0 189 67 1606 108 33 117 chr11 81803540 81803800 -68979753 - AluJo SINE Alu -3 309 81 2226 96 0 0 chr11 81803800 81804093 -68979460 + AluSx SINE Alu 1 293 -19 1606 108 33 117 chr11 81804093 81804165 -68979388 - AluJo SINE Alu -231 81 5 618 189 42 78 chr11 81804165 81804225 -68979328 - MER5A DNA MER1_type -122 67 6 386 338 71 0 chr11 81804352 81804506 -68979047 - MIR SINE MIR -50 212 48 336 194 129 6 chr11 81804829 81804943 -68978610 + L2 LINE L2 2924 3051 -221 288 261 0 0 chr11 81805008 81805077 -68978476 - L2 LINE L2 -3 3269 3201 445 258 172 0 chr11 81807016 81807167 -68976386 + MIR SINE MIR 76 252 -10 330 294 48 56 chr11 81807176 81807302 -68976251 - L2 LINE L2 -8 3305 3181 243 350 23 56 chr11 81807350 81807564 -68975989 - L2 LINE L2 -69 3203 2997 2063 120 0 0 chr11 81807634 81807925 -68975628 + AluSx SINE Alu 19 309 -3 456 262 26 52 chr11 81808002 81808193 -68975360 - L2 LINE L2 -506 2808 2623 * 795 207 114 31 chr11 81808183 81808410 -68975143 + MIR SINE MIR 17 262 0 218 303 121 30 chr11 81808411 81808510 -68975043 - L2 LINE L2 -702 2612 2505 744 156 7 38 chr11 81808521 81808704 -68974849 + MLT1F1 LTR MaLR 394 595 0 2243 98 0 3 chr11 81808729 81809035 -68974518 + AluSq SINE Alu 1 305 -8 238 298 77 0 chr11 81809206 81809310 -68974243 + L1ME4a LINE L1 5688 5799 -2009 260 313 85 11 chr11 81809349 81809525 -68974028 + L1ME4a LINE L1 5863 6051 -70 344 192 162 30 chr11 81809661 81809760 -68973793 + L2 LINE L2 3202 3313 0 195 287 96 21 chr11 81809825 81809919 -68973634 + L2 LINE L2 3171 3271 -1 2140 126 0 3 chr11 81810705 81811015 -68972538 - AluSx SINE Alu -3 309 1 204 323 16 0 chr11 81811352 81811414 -68972139 - MIR3 SINE MIR -32 176 114 241 308 87 0 chr11 81811618 81811722 -68971831 + L2 LINE L2 3159 3271 -1 532 190 144 121 chr11 81811741 81812026 -68971527 - MIR SINE MIR 0 262 2 1615 156 75 7 chr11 81812115 81812397 -68971156 - AluJb SINE Alu -9 303 3 2286 64 37 0 chr11 81812427 81812724 -68970829 + AluY SINE Alu 2 309 -2 727 157 26 0 chr11 81812734 81812849 -68970704 - FLAM_C SINE Alu -14 129 12 566 143 0 0 chr11 81812881 81812958 -68970595 + AluJ/FLAM SINE Alu 5 81 -231 2134 102 26 0 chr11 81812975 81813278 -68970275 - AluSq SINE Alu 0 313 3 417 184 0 0 chr11 81813279 81813355 -68970198 + FLAM_A SINE Alu 65 140 -2 2332 167 0 23 chr11 81813363 81813799 -68969754 - L1MB5 LINE L1 -46 6128 5703 193 286 14 14 chr11 81813808 81813878 -68969675 - MIR SINE MIR -79 183 114 198 0 0 0 chr11 81814482 81814504 -68969049 + (T)n Simple_repeat Simple_repeat 1 22 0 1354 120 29 5 chr11 81814775 81814984 -68968569 + L1PA10 LINE L1 5909 6122 -46 903 376 84 13 chr11 81815154 81815376 -68968177 + L3 LINE CR1 900 1105 -472 1862 160 46 92 chr11 81815376 81815789 -68967764 + MSTD LTR MaLR 1 394 -2 903 376 84 13 chr11 81815789 81816194 -68967359 + L3 LINE CR1 1105 1572 -5 379 323 66 71 chr11 81817011 81817435 -68966118 - L2 LINE L2 -41 3231 2810 858 142 0 0 chr11 81818444 81818564 -68964989 + FLAM_C SINE Alu 1 120 -23 228 35 0 0 chr11 81818564 81818593 -68964960 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 238 266 43 21 chr11 81818616 81818710 -68964843 - LTR67 LTR ERVL -22 535 440 2748 80 8 3 chr11 81819247 81819610 -68963943 - L1PA13 LINE L1 0 6163 5799 523 275 15 0 chr11 81819617 81819748 -68963805 - MIR SINE MIR -77 185 53 420 224 105 40 chr11 81819847 81819999 -68963554 + L1ME4a LINE L1 5960 6121 0 934 140 7 7 chr11 81820011 81820194 -68963359 - FRAM SINE Alu 0 180 1 1628 168 0 75 chr11 81820201 81820396 -68963157 - AluJb SINE Alu -3 309 148 1991 125 0 3 chr11 81820396 81820685 -68962868 - AluSx SINE Alu -24 288 1 1628 168 0 75 chr11 81820685 81820823 -68962730 - AluJb SINE Alu -164 148 1 305 189 198 0 chr11 81820872 81820978 -68962575 + L1ME4a LINE L1 5956 6082 -39 23 54 0 0 chr11 81820983 81821020 -68962533 + AT_rich Low_complexity Low_complexity 1 37 0 1832 185 0 3 chr11 81821028 81821341 -68962212 + AluSx SINE Alu 1 312 0 209 259 12 47 chr11 81822004 81822089 -68961464 + CT-rich Low_complexity Low_complexity 3 84 0 206 313 0 0 chr11 81822552 81822616 -68960937 - L3 LINE CR1 -109 1468 1405 297 263 92 69 chr11 81822621 81822838 -68960715 - L2 LINE L2 -22 3250 3029 1174 303 141 16 chr11 81822877 81823501 -68960052 + L2 LINE L2 2195 2896 -418 1945 121 25 0 chr11 81823819 81824101 -68959452 - AluSx SINE Alu -19 293 5 365 311 105 29 chr11 81824619 81824739 -68958814 + MIR SINE MIR 23 132 -130 853 171 33 0 chr11 81824739 81824891 -68958662 + L1PB4 LINE L1 6000 6156 0 365 311 105 29 chr11 81824891 81824979 -68958574 + MIR SINE MIR 132 247 -15 615 336 79 46 chr11 81825006 81825365 -68958188 - L3 LINE CR1 -733 844 467 2176 99 0 0 chr11 81825365 81825658 -68957895 + AluSx SINE Alu 1 293 -19 615 336 79 46 chr11 81825658 81825729 -68957824 - L3 LINE CR1 -1110 467 400 1546 157 0 39 chr11 81825741 81826046 -68957507 - L1MB5 LINE L1 -179 5995 5703 193 286 14 14 chr11 81826055 81826125 -68957428 - MIR SINE MIR -79 183 114 1834 134 0 33 chr11 81826729 81827035 -68956518 - AluJb SINE Alu -7 305 10 1771 161 0 26 chr11 81827351 81827655 -68955898 + AluJo SINE Alu 1 296 -16 236 314 178 0 chr11 81827811 81827929 -68955624 + MIR SINE MIR 53 191 -71 208 121 0 0 chr11 81827998 81828031 -68955522 + (CACCC)n Simple_repeat Simple_repeat 3 35 0 196 264 0 19 chr11 81828299 81828352 -68955201 - MIR3 SINE MIR 0 208 157 250 288 119 25 chr11 81828412 81828530 -68955023 - MIR SINE MIR -103 159 31 975 85 0 102 chr11 81828653 81828670 -68954883 + MER4E LTR ERV1 1 18 -761 2003 82 53 7 chr11 81828670 81828951 -68954602 - AluSx SINE Alu -18 294 1 975 85 0 102 chr11 81828951 81829034 -68954519 + MER4E LTR ERV1 18 78 -701 2653 95 125 5 chr11 81829034 81829434 -68954119 + LTR7 LTR ERV1 1 448 -2 975 85 0 102 chr11 81829434 81829508 -68954045 + MER4E LTR ERV1 78 158 -621 1865 127 55 18 chr11 81829508 81829888 -68953665 + LTR7 LTR ERV1 1 450 0 3584 108 40 55 chr11 81829888 81830255 -68953298 + MER4E LTR ERV1 154 510 -269 2321 72 0 0 chr11 81830255 81830546 -68953007 + AluSg SINE Alu 1 291 -19 3584 108 40 55 chr11 81830546 81830801 -68952752 + MER4E LTR ERV1 510 767 -12 242 271 104 35 chr11 81831049 81831193 -68952360 - L2 LINE L2 -44 3228 3075 805 262 33 32 chr11 81831193 81831451 -68952102 - MIR SINE MIR -4 258 3 1889 101 97 0 chr11 81831690 81831968 -68951585 + AluSg SINE Alu 1 305 -5 195 175 25 0 chr11 81832072 81832112 -68951441 + L2 LINE L2 3201 3241 -31 234 318 129 8 chr11 81832188 81832320 -68951233 - MIR SINE MIR -7 255 108 557 200 115 0 chr11 81832615 81832745 -68950808 - MER69 DNA AcHobo -1079 147 3 1830 153 0 20 chr11 81832944 81833245 -68950308 + AluJo SINE Alu 1 295 -17 190 305 43 78 chr11 81833426 81833567 -68949986 - MIR SINE MIR -10 252 117 314 235 157 49 chr11 81834194 81834296 -68949257 + MER81 DNA DNA 1 113 -1 233 300 100 11 chr11 81834300 81834390 -68949163 - L2 LINE L2 -33 3239 3142 334 294 137 7 chr11 81834421 81834574 -68948979 - MIR SINE MIR -38 224 52 670 143 0 4 chr11 81834810 81835035 -68948518 + AluJo SINE Alu 1 310 -2 214 257 19 67 chr11 81835093 81835198 -68948355 + L2 LINE L2 2998 3097 -175 * 270 265 90 108 chr11 81835181 81835404 -68948149 - L2 LINE L2 -38 3234 3016 734 139 31 16 chr11 81835442 81835571 -68947982 - FLAM_C SINE Alu 0 133 3 325 340 87 29 chr11 81835582 81836015 -68947538 - L2 LINE L2 -248 3024 2554 191 218 109 18 chr11 81837095 81837150 -68946403 + L2 LINE L2 3249 3308 -5 242 269 86 21 chr11 81837357 81837450 -68946103 + L2 LINE L2 3141 3239 -33 2153 143 0 0 chr11 81838779 81839079 -68944474 - AluSx SINE Alu -12 300 1 347 290 103 18 chr11 81839114 81839295 -68944258 - MIR SINE MIR -63 145 2 227 287 22 96 chr11 81839628 81839764 -68943789 - MIR3 SINE MIR -23 185 60 299 288 135 6 chr11 81840468 81840631 -68942922 - L3 LINE CR1 -158 1419 1236 206 217 67 0 chr11 81840698 81840758 -68942795 - L2 LINE L2 -12 3301 3238 206 341 24 8 chr11 81840975 81841098 -68942455 - L2 LINE L2 -10 3262 3138 550 237 149 21 chr11 81841150 81841344 -68942209 - MIR SINE MIR -37 225 7 207 306 148 0 chr11 81841344 81841452 -68942101 - L2 LINE L2 -135 3137 3014 2380 57 0 34 chr11 81841454 81841750 -68941803 - AluY SINE Alu -17 294 9 266 208 52 39 chr11 81842013 81842090 -68941463 - MIR SINE MIR -121 141 64 324 286 82 14 chr11 81843770 81843917 -68939636 + L2 LINE L2 2927 3083 -189 360 292 125 3 chr11 81845272 81845476 -68938077 + MIR SINE MIR 16 245 -17 319 296 158 63 chr11 81845837 81846172 -68937381 + L2 LINE L2 2906 3272 0 1932 154 31 0 chr11 81846238 81846530 -68937023 - AluJo SINE Alu -11 301 1 288 235 34 76 chr11 81846941 81847060 -68936493 - MIR SINE MIR -89 173 60 244 371 30 0 chr11 81847576 81847708 -68935845 + MIR SINE MIR 49 184 -78 192 158 53 0 chr11 81847748 81847786 -68935767 + MIR SINE MIR 111 150 -112 183 302 177 0 chr11 81847888 81847984 -68935569 + L2 LINE L2 3139 3251 -21 1521 141 0 0 chr11 81848933 81849146 -68934407 + AluSg/x SINE Alu 90 302 -8 2517 66 3 3 chr11 81849330 81849634 -68933919 - AluY SINE Alu -7 304 1 322 271 45 32 chr11 81849858 81850013 -68933540 + HAL1b LINE L1 747 903 -445 931 117 7 28 chr11 81850014 81850159 -68933394 + FLAM_C SINE Alu 1 142 -1 352 292 58 91 chr11 81850282 81850446 -68933107 + HAL1 LINE L1 2241 2394 -113 2253 104 0 20 chr11 81850446 81850744 -68932809 + AluY SINE Alu 1 292 -19 352 292 58 91 chr11 81850744 81850853 -68932700 + HAL1 LINE L1 2394 2505 -2 316 261 43 0 chr11 81851283 81851375 -68932178 - MER81 DNA DNA -17 97 2 2019 121 11 3 chr11 81851665 81851973 -68931580 + AluSx SINE Alu 1 310 0 248 160 40 0 chr11 81852043 81852093 -68931460 - L2 LINE L2 0 3313 3262 239 330 34 0 chr11 81852127 81852215 -68931338 - L2 LINE L2 -46 3226 3136 806 204 196 65 chr11 81852215 81852294 -68931259 - L1M4 LINE L1 -1293 4853 4786 456 19 0 0 chr11 81852294 81852347 -68931206 + (TG)n Simple_repeat Simple_repeat 2 54 0 1966 154 0 0 chr11 81852347 81852619 -68930934 - AluSx SINE Alu -40 272 1 806 204 196 65 chr11 81852619 81852921 -68930632 - L1M4 LINE L1 -1359 4787 4421 2151 119 10 10 chr11 81852921 81853231 -68930322 - AluSx SINE Alu 0 312 3 352 175 0 0 chr11 81853232 81853289 -68930264 + FLAM SINE Alu 66 122 -11 2277 169 9 24 chr11 81853290 81853752 -68929801 - L1MB5 LINE L1 -17 6157 5703 186 286 14 14 chr11 81853761 81853831 -68929722 - MIR SINE MIR -79 183 114 180 0 0 0 chr11 81854435 81854455 -68929098 + (T)n Simple_repeat Simple_repeat 1 20 0 2834 101 3 3 chr11 81854578 81854966 -68928587 - LTR3 LTR ERVK -44 388 1 585 137 0 99 chr11 81854966 81855049 -68928504 + L1MD3 LINE L1 7878 7945 -50 1749 115 119 8 chr11 81855049 81855310 -68928243 - AluSg1 SINE Alu -18 291 2 585 137 0 99 chr11 81855310 81855357 -68928196 + L1MD3 LINE L1 7945 7995 0 1901 117 13 52 chr11 81855360 81855668 -68927885 + AluSx SINE Alu 1 296 -16 1854 163 30 3 chr11 81855720 81856015 -68927538 - AluJo SINE Alu -7 305 3 2573 43 13 3 chr11 81856117 81856420 -68927133 + AluY SINE Alu 1 306 -5 2174 131 7 3 chr11 81856775 81857081 -68926472 + AluSx SINE Alu 1 307 -5 531 322 72 43 chr11 81857521 81857971 -68925582 + L1MC4a LINE L1 5477 5769 -590 1917 128 48 3 chr11 81858088 81858378 -68925175 + AluJb SINE Alu 1 303 -9 2501 78 3 0 chr11 81858614 81858920 -68924633 + AluSx SINE Alu 1 307 -5 1120 184 92 0 chr11 81858949 81859208 -68924345 + MER33 DNA MER1_type 2 285 -39 1866 85 52 113 chr11 81859208 81859571 -68923982 - Tigger1 DNA MER2_type 0 2418 2078 793 135 0 8 chr11 81859949 81860082 -68923471 + FLAM_C SINE Alu 2 133 0 587 175 8 33 chr11 81860158 81860301 -68923252 - FLAM_A SINE Alu 0 140 1 591 246 56 78 chr11 81860404 81860636 -68922917 + MIR SINE MIR 36 262 0 2177 108 27 10 chr11 81861031 81861327 -68922226 + AluSx SINE Alu 11 311 -1 651 281 46 29 chr11 81861530 81861768 -68921785 + MIR SINE MIR 21 262 0 198 0 0 0 chr11 81861770 81861792 -68921761 + (T)n Simple_repeat Simple_repeat 1 22 0 33 0 0 0 chr11 81861813 81861846 -68921707 + GC_rich Low_complexity Low_complexity 1 33 0 207 0 0 0 chr11 81861978 81862001 -68921552 + (A)n Simple_repeat Simple_repeat 1 23 0 1773 168 161 42 chr11 81862017 81862256 -68921297 + L1MD3 LINE L1 6858 7067 -928 413 200 33 33 chr11 81862256 81862346 -68921207 + MLT1F1 LTR MaLR 36 125 -442 1773 168 161 42 chr11 81862346 81862763 -68920790 + L1MD3 LINE L1 7067 7883 -112 503 143 0 76 chr11 81862763 81862824 -68920729 - LTR3 LTR ERVK 0 432 381 2568 77 0 0 chr11 81862824 81863134 -68920419 + AluY SINE Alu 1 310 -1 503 143 0 76 chr11 81863134 81863177 -68920376 - LTR3 LTR ERVK -51 381 336 206 328 0 22 chr11 81863378 81863414 -68920139 + (TG)n Simple_repeat Simple_repeat 1 36 -95 194 0 39 0 chr11 81863414 81863440 -68920113 + (TGG)n Simple_repeat Simple_repeat 3 29 0 206 328 0 22 chr11 81863440 81863537 -68920016 + (TG)n Simple_repeat Simple_repeat 36 131 0 218 337 98 38 chr11 81863960 81864144 -68919409 + MIR SINE MIR 60 254 -8 2169 129 7 0 chr11 81864793 81865095 -68918458 - AluSx SINE Alu -8 304 1 329 231 82 45 chr11 81865095 81865164 -68918389 + MIR SINE MIR 92 157 -105 2070 195 62 15 chr11 81865164 81865645 -68917908 - MLT1D LTR MaLR -1 504 1 329 231 82 45 chr11 81865645 81865709 -68917844 + MIR SINE MIR 157 230 -32 1841 116 39 25 chr11 81866453 81866611 -68916942 - AluSx SINE Alu -23 289 124 2365 104 0 0 chr11 81866611 81866910 -68916643 - AluSg SINE Alu -11 299 1 1841 116 39 25 chr11 81866910 81867036 -68916517 - AluSx SINE Alu -188 124 1 250 267 152 38 chr11 81867129 81867234 -68916319 - MIR3 SINE MIR -47 161 45 2563 59 13 0 chr11 81867798 81868105 -68915448 - AluY SINE Alu 0 311 1 375 241 132 68 chr11 81868212 81868432 -68915121 + LTR67 LTR ERVL 20 253 -304 323 250 48 10 chr11 81868515 81868619 -68914934 + LTR67 LTR ERVL 428 535 -22 2301 65 7 52 chr11 81868879 81869185 -68914368 + AluY SINE Alu 1 292 -19 200 206 0 0 chr11 81869185 81869219 -68914334 + (CATATA)n Simple_repeat Simple_repeat 5 38 0 2002 147 16 3 chr11 81869362 81869669 -68913884 + AluSx SINE Alu 1 311 -1 452 115 195 0 chr11 81870122 81870209 -68913344 - MLT1B LTR MaLR -286 104 1 2423 64 0 3 chr11 81870745 81871063 -68912490 + AluY SINE Alu 1 317 0 955 141 0 0 chr11 81871124 81871259 -68912294 + AluSq/x SINE Alu 2 136 -176 2441 75 7 0 chr11 81871259 81871554 -68911999 + AluY SINE Alu 1 297 -14 4462 74 42 8 chr11 81871556 81872174 -68911379 + SVA Other Other 154 792 -594 2755 26 0 10 chr11 81872275 81872582 -68910971 - AluY SINE Alu -7 304 1 2018 149 0 23 chr11 81873805 81874114 -68909439 + AluJo SINE Alu 1 302 -10 821 284 33 87 chr11 81874320 81874862 -68908691 - MER34 LTR ERV1 -29 513 1 247 296 63 21 chr11 81874863 81875005 -68908548 + L1M4 LINE L1 5504 5651 -527 2203 128 0 0 chr11 81875100 81875398 -68908155 + AluSx SINE Alu 1 298 -14 2418 84 3 0 chr11 81875493 81875792 -68907761 - AluSx SINE Alu -12 300 1 1885 131 48 3 chr11 81876028 81876318 -68907235 - AluSx SINE Alu -9 303 1 548 328 70 41 chr11 81876435 81876885 -68906668 - L1MC4a LINE L1 -590 5769 5477 2117 144 7 3 chr11 81877329 81877635 -68905918 - AluSx SINE Alu -5 307 1 250 344 107 19 chr11 81878337 81878607 -68904946 - L2 LINE L2 0 3272 2979 2382 95 10 0 chr11 81879263 81879557 -68903996 + AluSx SINE Alu 2 298 -14 2250 118 3 3 chr11 81879605 81879911 -68903642 - AluSx SINE Alu -2 310 5 239 301 150 18 chr11 81880018 81880244 -68903309 - MER102b DNA MER1_type -2 339 84 2275 127 0 0 chr11 81880261 81880568 -68902985 + AluSg SINE Alu 1 307 -3 256 202 57 113 chr11 81880573 81880697 -68902856 + L1MC4 LINE L1 7835 7951 -91 1684 181 3 26 chr11 81880793 81881103 -68902450 - AluJb SINE Alu -9 303 1 2057 129 0 0 chr11 81881128 81881392 -68902161 + AluSx SINE Alu 1 264 -48 244 155 17 17 chr11 81881400 81881458 -68902095 + GA-rich Low_complexity Low_complexity 2 59 0 1832 122 0 0 chr11 81881647 81881920 -68901633 - AluSx SINE Alu 0 309 37 190 349 94 0 chr11 81882020 81882126 -68901427 + MIR3 SINE MIR 78 193 -15 2490 69 0 0 chr11 81883648 81883951 -68899602 - AluY SINE Alu -7 304 2 1239 160 78 0 chr11 81884039 81884270 -68899283 + AluJb SINE Alu 44 292 -20 414 117 0 0 chr11 81884865 81884925 -68898628 + MER30B DNA MER1_type 5 64 -126 394 87 101 29 chr11 81884956 81885025 -68898528 + MER30B DNA MER1_type 157 230 0 303 287 46 0 chr11 81886013 81886100 -68897453 + MER5A DNA MER1_type 85 175 -14 195 250 125 37 chr11 81886080 81886216 -68897337 + MIR SINE MIR 80 227 -35 * 450 251 91 97 chr11 81886410 81886585 -68896968 - MER5B DNA MER1_type -2 176 3 1402 106 0 0 chr11 81887912 81888092 -68895461 - AluSq SINE Alu -78 235 56 341 149 96 32 chr11 81889413 81889459 -68894094 - L1MB2 LINE L1 -33 6138 6096 1100 178 77 95 chr11 81889459 81889808 -68893745 - MER2 DNA MER2_type -1 343 1 341 149 96 32 chr11 81889808 81889855 -68893698 - L1MB2 LINE L1 -75 6096 6039 2192 98 7 3 chr11 81889914 81890209 -68893344 - AluSq SINE Alu -17 296 1 2392 60 20 7 chr11 81890236 81890538 -68893015 - AluY SINE Alu -5 306 1 239 209 60 0 chr11 81890906 81890973 -68892580 - L1ME3A LINE L1 -32 6138 6068 1407 157 138 26 chr11 81890994 81891262 -68892291 + AluJb SINE Alu 3 300 -2 243 192 135 0 chr11 81891304 81891356 -68892197 + AluJ/FLAM SINE Alu 1 59 -243 1666 91 173 12 chr11 81891356 81891610 -68891943 - AluY SINE Alu -16 295 1 973 174 17 12 chr11 81891762 81891934 -68891619 - AluJb SINE Alu -19 293 121 26 0 0 0 chr11 81891934 81891960 -68891593 + AT_rich Low_complexity Low_complexity 1 26 0 5544 41 0 0 chr11 81891960 81892569 -68890984 - SVA Other Other -1 1385 777 289 298 31 23 chr11 81892814 81892975 -68890578 + MIR SINE MIR 37 262 0 2134 118 10 0 chr11 81893186 81893474 -68890079 - AluSx SINE Alu -3 309 19 1264 168 10 24 chr11 81893922 81894050 -68889503 + AluJo SINE Alu 1 126 -186 2233 78 7 7 chr11 81894050 81894344 -68889209 + AluY SINE Alu 1 294 -17 1264 168 10 24 chr11 81894344 81894424 -68889129 + AluJo SINE Alu 126 206 -106 24 0 0 0 chr11 81895229 81895253 -68888300 + AT_rich Low_complexity Low_complexity 1 24 0 266 180 20 0 chr11 81895853 81895903 -68887650 - Looper DNA T2_type 0 1558 1508 * 585 164 0 18 chr11 81895895 81896005 -68887548 - Looper DNA T2_type -676 882 775 2452 106 0 0 chr11 81896006 81896318 -68887235 + AluSx SINE Alu 1 312 0 579 128 198 47 chr11 81896320 81896357 -68887196 - Looper DNA T2_type -1355 203 173 1929 156 0 0 chr11 81896357 81896646 -68886907 - AluSx SINE Alu -1 311 23 579 128 198 47 chr11 81896646 81896780 -68886773 - Looper DNA T2_type -1385 173 6 380 259 80 69 chr11 81897195 81897396 -68886157 + MIR SINE MIR 1 197 -59 184 247 141 12 chr11 81897394 81897479 -68886074 - L2 LINE L2 -39 3233 3138 * 1463 219 15 30 chr11 81898747 81899080 -68884473 + MLT1A1 LTR MaLR 32 359 -6 707 304 14 19 chr11 81899633 81899847 -68883706 + MIR SINE MIR 35 247 -15 306 134 113 72 chr11 81900187 81900284 -68883269 + MIR SINE MIR 42 142 -120 395 256 102 0 chr11 81901714 81901851 -68881702 + L1ME4a LINE L1 5970 6120 -1 342 302 139 35 chr11 81901915 81902087 -68881466 + MIR SINE MIR 53 242 -20 551 307 63 21 chr11 81902922 81903160 -68880393 + L2 LINE L2 2595 2842 -472 181 239 14 70 chr11 81903185 81903256 -68880297 - L2 LINE L2 -813 2501 2435 2169 109 28 0 chr11 81903340 81903624 -68879929 - AluSx SINE Alu -20 292 1 207 371 39 9 chr11 81903722 81903831 -68879722 + MIR SINE MIR 41 151 -68 301 139 14 28 chr11 81903831 81903903 -68879650 + CT-rich Low_complexity Low_complexity 3 73 0 1800 141 32 45 chr11 81903905 81904218 -68879335 - AluJo SINE Alu -1 311 3 445 267 166 41 chr11 81904489 81904579 -68878974 + L2 LINE L2 2447 2524 -789 1693 119 116 11 chr11 81904579 81904847 -68878706 + AluSg SINE Alu 1 296 -14 445 267 166 41 chr11 81904847 81905376 -68878177 + L2 LINE L2 2524 3159 -154 2346 93 7 0 chr11 81905416 81905718 -68877835 - AluY SINE Alu -7 304 1 692 190 39 49 chr11 81905718 81905923 -68877630 - Charlie2 DNA MER1_type -129 2733 2531 2442 95 0 3 chr11 81906122 81906426 -68877127 + AluSx SINE Alu 1 303 -9 2036 125 11 0 chr11 81906538 81906840 -68876713 - AluSx SINE Alu 0 305 1 21 0 0 0 chr11 81906849 81906870 -68876683 + AT_rich Low_complexity Low_complexity 1 21 0 332 264 50 57 chr11 81906883 81907023 -68876530 - MIR SINE MIR -3 259 121 1087 165 28 76 chr11 81907589 81907654 -68875899 - MER33 DNA MER1_type -2286 299 232 2265 114 3 0 chr11 81907654 81907961 -68875592 + AluSx SINE Alu 1 308 -4 2337 75 7 0 chr11 81907970 81908263 -68875290 + AluSq SINE Alu 1 295 -18 1087 165 28 76 chr11 81908263 81908478 -68875075 - MER33 DNA MER1_type -2361 224 23 904 187 5 73 chr11 81908696 81908915 -68874638 + AluJo SINE Alu 1 204 -108 233 121 0 0 chr11 81908919 81908952 -68874601 + Alu SINE Alu 87 119 -14 236 273 34 0 chr11 81908963 81909051 -68874502 + L1MC4 LINE L1 6613 6703 -1339 338 241 76 0 chr11 81909053 81909132 -68874421 - L1MC4 LINE L1 -1343 6699 6615 1002 155 0 12 chr11 81909132 81909293 -68874260 + FRAM SINE Alu 18 176 0 2264 122 0 6 chr11 81909522 81909834 -68873719 + AluSx SINE Alu 3 312 0 583 218 0 24 chr11 81909877 81910001 -68873552 + MIR SINE MIR 77 197 -65 328 295 115 29 chr11 81910334 81910374 -68873179 - MIR SINE MIR -3 259 224 2336 89 0 35 chr11 81910374 81910689 -68872864 - AluY SINE Alu -7 304 1 328 295 115 29 chr11 81910689 81910787 -68872766 - MIR SINE MIR -38 224 109 249 296 91 0 chr11 81911317 81911405 -68872148 + MIR SINE MIR 28 123 -139 201 239 0 22 chr11 81911438 81911484 -68872069 + MIR SINE MIR 218 262 0 574 288 101 32 chr11 81911570 81911870 -68871683 + L1MC4a LINE L1 5564 5888 -1920 1795 153 57 23 chr11 81911870 81912170 -68871383 + AluJb SINE Alu 3 312 0 574 288 101 32 chr11 81912170 81912185 -68871368 + L1MC4a LINE L1 5888 5901 -1907 2218 115 0 26 chr11 81912199 81912511 -68871042 - AluSx SINE Alu -6 306 3 2002 146 3 31 chr11 81912656 81912977 -68870576 - AluJo SINE Alu 0 312 1 27 29 0 0 chr11 81913020 81913054 -68870499 + AT_rich Low_complexity Low_complexity 1 34 0 5072 64 42 9 chr11 81913054 81913693 -68869860 + SVA Other Other 727 1386 0 2255 115 3 6 chr11 81913697 81914011 -68869542 + AluSq SINE Alu 1 313 0 324 250 243 26 chr11 81914015 81914167 -68869386 + L1MC/D LINE L1 5378 5562 -604 2400 96 3 0 chr11 81914168 81914471 -68869082 - AluSg SINE Alu -6 304 1 1110 107 0 31 chr11 81914668 81914827 -68868726 - AluSx SINE Alu -158 154 1 871 158 12 29 chr11 81914929 81915100 -68868453 - MER20 DNA MER1_type -21 198 31 311 158 24 73 chr11 81915103 81915185 -68868368 + MER53 DNA DNA 1 78 -111 * 361 83 0 0 chr11 81915184 81915232 -68868321 - LTR54 LTR ERV1 -61 449 402 417 173 47 71 chr11 81915233 81915360 -68868193 + MER53 DNA DNA 65 188 -1 2353 94 7 10 chr11 81915885 81916194 -68867359 - AluSp SINE Alu -5 308 1 367 227 11 45 chr11 81916203 81916291 -68867262 - L2 LINE L2 -18 3295 3211 186 222 52 96 chr11 81916394 81916529 -68867024 - L2 LINE L2 -940 2374 2246 1857 151 27 10 chr11 81916641 81916940 -68866613 + AluJb SINE Alu 5 308 -4 699 257 109 25 chr11 81917133 81917417 -68866136 + L2 LINE L2 2851 3158 -155 665 248 14 0 chr11 81917477 81917622 -68865931 - L1MC/D LINE L1 -2068 5740 5594 496 223 12 90 chr11 81917623 81917768 -68865785 + L2 LINE L2 3161 3293 -20 2300 116 0 0 chr11 81917768 81918079 -68865474 + AluSq SINE Alu 2 312 -1 496 223 12 90 chr11 81918079 81918099 -68865454 + L2 LINE L2 3293 3313 0 2106 129 7 0 chr11 81918339 81918633 -68864920 + AluSx SINE Alu 1 296 -16 866 149 8 0 chr11 81918647 81918781 -68864772 + FLAM_C SINE Alu 6 140 -3 2228 122 6 3 chr11 81918839 81919150 -68864403 - AluSq SINE Alu -1 312 1 257 254 90 0 chr11 81919377 81919444 -68864109 + L2 LINE L2 3163 3235 -37 351 248 74 58 chr11 81919789 81919910 -68863643 + MIR SINE MIR 13 135 -127 2513 69 20 0 chr11 81920531 81920835 -68862718 + AluY SINE Alu 1 310 -1 280 265 277 43 chr11 81920837 81921165 -68862388 + HAL1 LINE L1 1280 1684 -823 1892 155 16 7 chr11 81921168 81921477 -68862076 - AluJb SINE Alu 0 312 1 694 228 96 0 chr11 81921554 81921721 -68861832 + MER5A DNA MER1_type 3 185 -4 240 261 62 0 chr11 81921735 81921800 -68861753 + LTR16A1 LTR ERVL 8 76 -381 656 202 40 12 chr11 81921829 81922002 -68861551 + LTR16A1 LTR ERVL 280 457 0 2376 90 3 0 chr11 81922138 81922438 -68861115 - AluSp SINE Alu -11 302 2 324 212 39 51 chr11 81922720 81922974 -68860579 - L1MC5 LINE L1 -32 7929 7498 1562 181 3 19 chr11 81923097 81923412 -68860141 - AluY SINE Alu -1 310 1 315 271 45 32 chr11 81923636 81923791 -68859762 + HAL1b LINE L1 747 903 -445 927 117 7 28 chr11 81923792 81923937 -68859616 + FLAM_C SINE Alu 1 142 -1 342 299 19 79 chr11 81924041 81924224 -68859329 + HAL1 LINE L1 2229 2399 -108 2296 97 0 20 chr11 81924224 81924522 -68859031 + AluY SINE Alu 1 292 -19 342 299 19 79 chr11 81924522 81924552 -68859001 + HAL1 LINE L1 2399 2429 -78 21 0 0 0 chr11 81924617 81924638 -68858915 + AT_rich Low_complexity Low_complexity 1 21 0 327 245 32 11 chr11 81925061 81925155 -68858398 - MER81 DNA DNA -17 97 2 2009 121 11 3 chr11 81925445 81925753 -68857800 + AluSx SINE Alu 1 310 0 264 160 40 0 chr11 81925823 81925873 -68857680 - L2 LINE L2 0 3313 3262 260 330 34 0 chr11 81925907 81925995 -68857558 - L2 LINE L2 -46 3226 3136 974 207 158 59 chr11 81925995 81926074 -68857479 - L1M4 LINE L1 -1293 4853 4783 456 19 0 0 chr11 81926074 81926127 -68857426 + (TG)n Simple_repeat Simple_repeat 2 54 0 1988 151 0 0 chr11 81926127 81926399 -68857154 - AluSx SINE Alu -40 272 1 974 207 158 59 chr11 81926399 81926701 -68856852 - L1M4 LINE L1 -1363 4783 4512 2217 103 3 28 chr11 81926701 81927021 -68856532 - AluSx SINE Alu 0 312 1 974 207 158 59 chr11 81927021 81927242 -68856311 - L1M4 LINE L1 -1634 4512 4159 40 0 0 0 chr11 81927242 81927282 -68856271 + AT_rich Low_complexity Low_complexity 1 40 0 2023 98 53 0 chr11 81927282 81927547 -68856006 - AluSx SINE Alu -33 279 1 891 242 169 34 chr11 81927547 81927636 -68855917 - L1MEc LINE L1 -4039 2357 2281 2310 98 3 0 chr11 81927636 81927932 -68855621 - AluSp SINE Alu -16 297 1 891 242 169 34 chr11 81927932 81928161 -68855392 - L1MEc LINE L1 -4115 2281 2084 2358 98 0 0 chr11 81928161 81928456 -68855097 + AluSx SINE Alu 1 295 -17 1565 116 5 9 chr11 81928456 81928679 -68854874 + AluSg/x SINE Alu 80 302 -8 891 242 169 34 chr11 81928679 81928886 -68854667 - L1MEc LINE L1 -4311 2085 1759 998 122 14 7 chr11 81928895 81929043 -68854510 + AluJo SINE Alu 1 149 -163 364 217 2 15 chr11 81929048 81929139 -68854414 - AluJ/FLAM SINE Alu -226 76 2 629 231 123 83 chr11 81929139 81929372 -68854181 - L1MEc LINE L1 -4699 1697 1440 2451 78 3 0 chr11 81929372 81929666 -68853887 + AluSp SINE Alu 2 296 -17 629 231 123 83 chr11 81929666 81929830 -68853723 - L1MEc LINE L1 -4956 1440 1284 * 701 299 35 43 chr11 81929827 81930112 -68853441 - L1MEc LINE L1 -5694 511 228 1872 127 3 88 chr11 81930112 81930293 -68853260 - AluJo SINE Alu -9 303 161 2046 138 7 0 chr11 81930293 81930584 -68852969 - AluSx SINE Alu -18 294 2 1872 127 3 88 chr11 81930584 81930733 -68852820 - AluJo SINE Alu -151 161 1 701 299 35 43 chr11 81930733 81930821 -68852732 - L1MEc LINE L1 -5977 228 141 629 250 106 97 chr11 81930959 81931319 -68852234 + LTR67 LTR ERVL 2 364 -193 242 209 35 58 chr11 81931316 81931402 -68852151 + LTR67 LTR ERVL 466 549 -8 * 2449 74 0 19 chr11 81931403 81931714 -68851839 + AluY SINE Alu 2 306 -5 551 307 63 21 chr11 81931991 81932229 -68851324 + L2 LINE L2 2595 2842 -472 181 239 14 70 chr11 81932254 81932325 -68851228 - L2 LINE L2 -813 2501 2435 2169 109 28 0 chr11 81932409 81932693 -68850860 - AluSx SINE Alu -20 292 1 207 371 39 9 chr11 81932791 81932900 -68850653 + MIR SINE MIR 41 151 -68 246 139 42 28 chr11 81932900 81932972 -68850581 + CT-rich Low_complexity Low_complexity 1 73 0 1785 142 39 45 chr11 81932977 81933288 -68850265 - AluJo SINE Alu -1 311 3 445 267 166 41 chr11 81933559 81933649 -68849904 + L2 LINE L2 2447 2524 -789 1684 120 116 11 chr11 81933649 81933916 -68849637 + AluSg SINE Alu 1 295 -15 445 267 166 41 chr11 81933916 81934445 -68849108 + L2 LINE L2 2524 3159 -154 2318 82 7 3 chr11 81934495 81934788 -68848765 - AluY SINE Alu -17 294 1 692 190 39 49 chr11 81934788 81934993 -68848560 - Charlie2 DNA MER1_type -129 2733 2531 2522 86 3 0 chr11 81935192 81935495 -68848058 + AluSx SINE Alu 1 304 -8 322 260 106 0 chr11 81935496 81935600 -68847953 - MER112 DNA MER1_type -145 115 1 1917 123 60 3 chr11 81935963 81936247 -68847306 - AluSg SINE Alu -10 300 1 320 289 55 8 chr11 81936248 81936376 -68847177 + L1ME4a LINE L1 5791 5924 -197 258 303 92 44 chr11 81936630 81936812 -68846741 - MIR SINE MIR -55 207 25 232 365 113 36 chr11 81937280 81937502 -68846051 + L2 LINE L2 2948 3186 -86 282 262 167 47 chr11 81937523 81937716 -68845837 + MIR SINE MIR 11 238 -24 409 262 135 14 chr11 81938443 81938584 -68844969 - MIR SINE MIR -65 197 40 295 318 54 16 chr11 81938944 81939073 -68844480 + L2 LINE L2 3132 3265 -7 183 195 0 49 chr11 81939104 81939145 -68844408 + L2 LINE L2 3137 3175 -97 2173 129 6 3 chr11 81939377 81939688 -68843865 - AluSq SINE Alu -1 312 1 236 254 90 0 chr11 81939915 81939982 -68843571 + L2 LINE L2 3163 3235 -37 323 264 66 50 chr11 81940327 81940448 -68843105 + MIR SINE MIR 13 135 -127 2649 59 0 0 chr11 81941069 81941376 -68842177 + AluY SINE Alu 1 307 -4 324 212 39 51 chr11 81941499 81941753 -68841800 + L1MC5 LINE L1 7498 7929 -32 2402 87 3 0 chr11 81942035 81942335 -68841218 + AluSp SINE Alu 2 302 -11 679 202 40 12 chr11 81942471 81942644 -68840909 - LTR16A1 LTR ERVL 0 457 280 251 246 62 0 chr11 81942673 81942738 -68840815 - LTR16A1 LTR ERVL -381 76 8 643 228 96 0 chr11 81942752 81942919 -68840634 - MER5A DNA MER1_type -4 185 3 2170 131 20 3 chr11 81942997 81943303 -68840250 + AluJb SINE Alu 1 311 -1 288 281 207 35 chr11 81943375 81943631 -68839922 - HAL1 LINE L1 -927 1580 1281 2329 106 20 0 chr11 81943631 81943933 -68839620 - AluSg SINE Alu 0 310 3 298 333 89 30 chr11 81943944 81944377 -68839176 - L2 LINE L2 -248 3024 2554 188 218 109 18 chr11 81945457 81945512 -68838041 + L2 LINE L2 3249 3308 -5 232 204 82 92 chr11 81945719 81945817 -68837736 + L2 LINE L2 3141 3237 -35 2179 140 0 0 chr11 81947141 81947441 -68836112 - AluSx SINE Alu -12 300 1 347 290 103 18 chr11 81947476 81947657 -68835896 - MIR SINE MIR -63 145 2 227 287 22 96 chr11 81947990 81948126 -68835427 - MIR3 SINE MIR -23 185 60 299 288 135 6 chr11 81948830 81948993 -68834560 - L3 LINE CR1 -158 1419 1236 206 217 67 0 chr11 81949060 81949120 -68834433 - L2 LINE L2 -12 3301 3238 200 317 49 32 chr11 81949337 81949460 -68834093 - L2 LINE L2 -10 3262 3138 550 237 149 21 chr11 81949512 81949706 -68833847 - MIR SINE MIR -37 225 7 207 306 148 0 chr11 81949706 81949814 -68833739 - L2 LINE L2 -135 3137 3014 2191 60 0 53 chr11 81949816 81950118 -68833435 - AluY SINE Alu -17 294 9 266 208 52 39 chr11 81950381 81950458 -68833095 - MIR SINE MIR -121 141 64 331 279 82 14 chr11 81952138 81952285 -68831268 + L2 LINE L2 2927 3083 -189 360 292 125 3 chr11 81953640 81953844 -68829709 + MIR SINE MIR 16 245 -17 319 296 158 63 chr11 81954205 81954540 -68829013 + L2 LINE L2 2906 3272 0 2028 147 27 0 chr11 81954606 81954899 -68828654 - AluJo SINE Alu -11 301 1 288 235 34 76 chr11 81955310 81955429 -68828124 - MIR SINE MIR -89 173 60 244 371 30 0 chr11 81955945 81956077 -68827476 + MIR SINE MIR 49 184 -78 192 158 53 0 chr11 81956117 81956155 -68827398 + MIR SINE MIR 111 150 -112 183 302 177 0 chr11 81956257 81956353 -68827200 + L2 LINE L2 3139 3251 -21 256 251 117 0 chr11 81957292 81957404 -68826149 - MER45 DNA AcHobo -130 48 1 * 917 172 6 6 chr11 81957404 81957581 -68825972 - MER96B DNA MER1_type? -239 178 2 186 203 78 78 chr11 81957615 81957679 -68825874 + L2 LINE L2 3030 3093 -179 311 275 114 0 chr11 81958700 81958832 -68824721 + MIR SINE MIR 104 256 -6 264 270 26 52 chr11 81958953 81959068 -68824485 - MIR SINE MIR -73 135 23 317 271 111 35 chr11 81960508 81960652 -68822901 - L1ME4a LINE L1 0 6121 5967 1672 152 52 7 chr11 81960725 81961015 -68822538 + AluJo SINE Alu 2 304 -8 304 287 21 35 chr11 81961269 81961412 -68822141 - L1ME4a LINE L1 -382 5739 5599 341 175 288 38 chr11 81961444 81961604 -68821949 - L1MC4a LINE L1 -1914 5894 5695 446 261 108 25 chr11 81961717 81961874 -68821679 - MIR3 SINE MIR -37 171 2 268 266 51 0 chr11 81962189 81962268 -68821285 - MIR SINE MIR -92 116 34 359 277 113 7 chr11 81963376 81963517 -68820036 + MIR SINE MIR 51 206 -56 467 224 56 28 chr11 81963675 81963818 -68819735 + MIR3 SINE MIR 19 165 -43 2250 117 0 0 chr11 81964837 81965135 -68818418 - AluSx SINE Alu -14 298 1 1787 174 3 0 chr11 81965139 81965421 -68818132 - AluSx SINE Alu 0 312 30 1164 270 125 24 chr11 81965425 81965881 -68817672 + MLT1J LTR MaLR 1 502 -9 230 306 82 10 chr11 81965892 81965990 -68817563 - MIR SINE MIR -53 209 105 275 269 19 28 chr11 81966035 81966143 -68817410 - MIR SINE MIR -84 124 18 7920 36 1 0 chr11 81966570 81967582 -68815971 + L1P LINE L1 4334 5346 -800 1958 239 45 31 chr11 81967715 81967842 -68815711 - L1M4 LINE L1 -1383 4763 4639 2095 150 22 8 chr11 81967842 81968201 -68815352 - THE1B LTR MaLR 0 364 1 1958 239 45 31 chr11 81968201 81968930 -68814623 - L1M4 LINE L1 -1507 4639 3895 218 270 52 52 chr11 81969126 81969241 -68814312 - L2 LINE L2 -223 3049 2935 865 249 87 0 chr11 81969719 81969948 -68813605 - MIR SINE MIR -2 260 12 361 247 31 0 chr11 81969980 81970077 -68813476 - L2 LINE L2 -18 3254 3155 587 265 90 25 chr11 81970189 81970389 -68813164 + MIR SINE MIR 31 243 -19 189 272 161 12 chr11 81970875 81970956 -68812597 + MIR SINE MIR 108 200 -62 446 341 40 0 chr11 81971065 81971238 -68812315 + MIR SINE MIR 39 218 -44 215 267 33 0 chr11 81971301 81971361 -68812192 + L2 LINE L2 2992 3053 -219 719 305 90 16 chr11 81971361 81971748 -68811805 - L2 LINE L2 -36 3277 2862 207 283 20 50 chr11 81972003 81972102 -68811451 - MIR SINE MIR -77 131 36 652 160 8 8 chr11 81972433 81972552 -68811001 + FLAM_A SINE Alu 20 138 -4 331 302 85 0 chr11 81973952 81974081 -68809472 - MIR SINE MIR -23 239 100 537 266 41 12 chr11 81974105 81974274 -68809279 + MER5A DNA MER1_type 16 189 0 516 234 26 32 chr11 81974322 81974476 -68809077 + L1MC5 LINE L1 7743 7895 -66 255 103 0 0 chr11 81974502 81974541 -68809012 + (CA)n Simple_repeat Simple_repeat 2 40 0 322 250 213 0 chr11 81974688 81974852 -68808701 + L2 LINE L2 2987 3185 -87 236 307 13 13 chr11 81975486 81975561 -68807992 + MIR SINE MIR 48 122 -86 671 146 31 8 chr11 81975762 81975892 -68807661 + MIR SINE MIR 74 206 -56 2071 110 0 60 chr11 81975892 81976210 -68807343 + AluSx SINE Alu 1 299 -13 805 216 11 6 chr11 81976307 81976483 -68807070 - MER5B DNA MER1_type 0 178 2 545 302 7 7 chr11 81976497 81976646 -68806907 - MER5A DNA MER1_type -6 183 35 316 241 45 18 chr11 81976678 81976790 -68806763 - L1M4 LINE L1 -1576 4570 4456 211 211 0 0 chr11 81976800 81976838 -68806715 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 344 319 52 17 chr11 81976839 81977071 -68806482 - L1M4 LINE L1 -1110 5036 4797 1516 292 86 29 chr11 81977179 81978336 -68805217 - L1M4 LINE L1 -1821 4325 3103 796 348 93 32 chr11 81978347 81979123 -68804430 - L2 LINE L2 -495 2819 1997 2215 82 0 0 chr11 81979705 81979973 -68803580 - AluSx SINE Alu -44 268 1 253 310 95 84 chr11 81980073 81980347 -68803206 - L2 LINE L2 0 3272 2996 1124 192 94 0 chr11 81980882 81981148 -68802405 + L1ME3 LINE L1 5521 5811 -359 1839 192 130 18 chr11 81981151 81981605 -68801948 + MLT1D LTR MaLR 1 505 0 739 164 10 129 chr11 81981617 81981763 -68801790 - MER20 DNA MER1_type -29 190 73 2525 67 3 3 chr11 81981763 81982063 -68801490 + AluY SINE Alu 1 300 -11 739 164 10 129 chr11 81982063 81982117 -68801436 - MER20 DNA MER1_type -146 73 14 864 209 88 20 chr11 81982121 81982370 -68801183 + L1ME3 LINE L1 5896 6161 -1 287 300 171 7 chr11 81983154 81983341 -68800212 - MIR SINE MIR -12 250 36 206 176 0 0 chr11 81983701 81983735 -68799818 + MER5B DNA MER1_type 7 40 -138 287 287 160 21 chr11 81984292 81984480 -68799073 + MIR SINE MIR 48 261 -1 199 323 101 73 chr11 81984524 81984812 -68798741 - L2 LINE L2 0 3272 2977 339 283 51 29 chr11 81984941 81985079 -68798474 + MIR SINE MIR 47 187 -75 339 293 0 40 chr11 81985100 81985199 -68798354 + L2 LINE L2 3219 3313 0 284 244 0 64 chr11 81985191 81985269 -68798284 + MIR SINE MIR 186 258 -4 * 2332 104 13 3 chr11 81986304 81986613 -68796940 - AluSx SINE Alu 0 312 1 243 310 11 23 chr11 81986635 81986722 -68796831 - L2 LINE L2 -188 3084 2999 1804 160 49 0 chr11 81986907 81987275 -68796278 - MER58D DNA MER1_type 0 386 1 288 313 0 0 chr11 81987960 81988040 -68795513 - L2 LINE L2 0 3313 3234 180 77 0 0 chr11 81988131 81988157 -68795396 + (ATG)n Simple_repeat Simple_repeat 1 26 0 435 304 30 0 chr11 81988357 81988492 -68795061 + MIR SINE MIR 34 172 -90 213 222 167 19 chr11 81988888 81988996 -68794557 + MIR3 SINE MIR 62 185 -23 2210 99 0 7 chr11 81989330 81989614 -68793939 + AluSg SINE Alu 1 282 -28 217 0 0 0 chr11 81989614 81989638 -68793915 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 1680 150 0 103 chr11 81990019 81990360 -68793193 + AluJb SINE Alu 1 306 -6 244 299 19 26 chr11 81990368 81990522 -68793031 - L1MEc LINE L1 -4064 2332 2180 2282 100 170 14 chr11 81990617 81990987 -68792566 + MSTA LTR MaLR 1 428 0 345 264 47 61 chr11 81991169 81991317 -68792236 - MLT1J LTR MaLR -35 476 331 380 264 8 24 chr11 81991497 81991622 -68791931 - MLT1J LTR MaLR -365 146 24 894 282 64 51 chr11 81991626 81992016 -68791537 - MLT1K LTR MaLR -144 444 50 723 297 39 31 chr11 81993018 81993274 -68790279 - MIR SINE MIR -2 260 3 2349 107 0 0 chr11 81993285 81993583 -68789970 - AluSq SINE Alu -15 298 1 425 163 156 37 chr11 81993583 81993718 -68789835 - MIR SINE MIR -83 179 29 216 299 96 29 chr11 81994121 81994307 -68789246 - MIR SINE MIR -21 241 37 243 318 7 14 chr11 81994518 81994666 -68788887 + (CGG)n Simple_repeat Simple_repeat 2 148 0 210 237 13 13 chr11 81995306 81995382 -68788171 + (CCG)n Simple_repeat Simple_repeat 2 77 0 34 24 0 0 chr11 81995465 81995506 -68788047 + GC_rich Low_complexity Low_complexity 1 41 0 408 285 80 0 chr11 81995984 81996121 -68787432 + L2 LINE L2 2500 2647 -667 1924 142 0 4 chr11 81996137 81996418 -68787135 - AluSx SINE Alu -32 280 1 353 250 0 0 chr11 81996435 81996511 -68787042 - L2 LINE L2 0 3313 3238 374 266 33 73 chr11 81996644 81996890 -68786663 + L2 LINE L2 2785 3020 -252 1208 124 0 0 chr11 81996890 81997071 -68786482 - AluSg/x SINE Alu 0 301 121 1666 61 0 5 chr11 81997180 81997378 -68786175 - AluY SINE Alu -44 267 71 41514 35 22 2 chr11 81997379 82003407 -68780146 - L1PA2 LINE L1 0 6155 4 686 48 0 0 chr11 82003407 82003490 -68780063 - AluSc SINE Alu -225 84 2 268 167 0 0 chr11 82003490 82003538 -68780015 - L1M4 LINE L1 -352 5832 5785 234 105 0 0 chr11 82003540 82003578 -68779975 - MADE1 DNA Mariner -42 38 1 2610 145 20 43 chr11 82003582 82003759 -68779794 - L1M4 LINE L1 -408 5776 5596 2576 64 0 10 chr11 82003759 82004073 -68779480 - AluY SINE Alu 0 311 1 2610 145 20 43 chr11 82004073 82004290 -68779263 - L1M4 LINE L1 -588 5596 5376 1685 182 7 29 chr11 82004290 82004598 -68778955 - AluJb SINE Alu -11 301 1 2610 145 20 43 chr11 82004598 82004867 -68778686 - L1M4 LINE L1 -808 5376 5126 205 233 194 19 chr11 82005051 82005154 -68778399 + L2 LINE L2 3148 3268 -4 984 170 40 20 chr11 82005345 82005545 -68778008 + L1MB3 LINE L1 5980 6183 0 599 253 25 6 chr11 82006034 82006196 -68777357 - MIR SINE MIR 0 262 98 261 327 87 29 chr11 82006401 82006505 -68777048 - MIR SINE MIR -82 126 17 189 74 0 0 chr11 82006641 82006668 -68776885 + (TC)n Simple_repeat Simple_repeat 2 28 0 569 266 92 5 chr11 82006987 82007205 -68776348 - LTR16A1 LTR ERVL 0 457 221 530 285 161 45 chr11 82008304 82008393 -68775160 - L2 LINE L2 -62 3210 3133 2364 104 0 19 chr11 82008393 82008710 -68774843 + AluSp SINE Alu 1 311 -2 530 285 161 45 chr11 82008710 82009121 -68774432 - L2 LINE L2 -139 3133 2667 1161 186 27 30 chr11 82009179 82009262 -68774291 - MER58D DNA MER1_type -2082 338 256 1975 138 0 10 chr11 82009262 82009574 -68773979 - AluSx SINE Alu 0 309 1 2210 154 3 0 chr11 82009576 82009895 -68773658 - 7SLRNA srpRNA srpRNA 0 320 1 1161 186 27 30 chr11 82009895 82010102 -68773451 - MER58D DNA MER1_type -2165 255 45 358 307 0 0 chr11 82010424 82010512 -68773041 - MIR SINE MIR -91 117 30 258 128 21 21 chr11 82010697 82010744 -68772809 - MIR SINE MIR -69 139 93 2077 193 29 60 chr11 82010749 82011268 -68772285 + MLT1D LTR MaLR 1 503 -2 8940 191 59 29 chr11 82011297 82012315 -68771238 - L1MC3 LINE L1 -7 7778 6792 2156 131 10 6 chr11 82012315 82012627 -68770926 - AluSq SINE Alu 0 313 1 8940 191 59 29 chr11 82012627 82013240 -68770313 - L1MC3 LINE L1 -993 6792 6199 2244 96 0 30 chr11 82013240 82013541 -68770012 - AluSq SINE Alu -21 292 1 8940 191 59 29 chr11 82013541 82014099 -68769454 - L1MC3 LINE L1 -1586 6199 5523 379 318 28 0 chr11 82014176 82014283 -68769270 + MIR SINE MIR 12 121 -141 529 285 21 0 chr11 82014315 82014459 -68769094 - LTR16A LTR ERVL 0 450 304 349 269 124 28 chr11 82014663 82014808 -68768745 + MIR3 SINE MIR 11 169 -39 1084 217 93 20 chr11 82014919 82015219 -68768334 + MER5C DNA MER1_type 3 324 0 2487 77 3 0 chr11 82015286 82015586 -68767967 + AluSp SINE Alu 1 301 -12 2350 79 3 7 chr11 82015681 82015971 -68767582 + AluSg SINE Alu 2 290 -20 286 254 0 0 chr11 82016251 82016314 -68767239 - MIR SINE MIR -68 140 78 243 281 0 0 chr11 82016514 82016571 -68766982 + MIR SINE MIR 194 250 -12 271 289 145 0 chr11 82016768 82016851 -68766702 + L2 LINE L2 3169 3263 -9 337 256 64 70 chr11 82017467 82017639 -68765914 - MLT1J2 LTR MaLR -3 447 277 1632 218 111 24 chr11 82017969 82018465 -68765088 + MLT1F LTR MaLR 1 539 -3 197 298 119 84 chr11 82018559 82019012 -68764541 - L2 LINE L2 0 3272 2804 270 318 106 42 chr11 82019214 82019497 -68764056 - L2 LINE L2 -161 3111 2811 531 305 45 0 chr11 82019555 82019755 -68763798 + LTR33 LTR ERVL 12 220 -301 213 395 31 0 chr11 82019965 82020094 -68763459 - L2 LINE L2 -543 2771 2639 837 213 51 20 chr11 82020223 82020476 -68763077 + MLT1H LTR MaLR 3 263 -286 2452 95 0 19 chr11 82021078 82021394 -68762159 - AluSg SINE Alu 0 310 1 567 262 87 12 chr11 82021409 82021581 -68761972 - MIR SINE MIR -31 231 47 2404 107 0 0 chr11 82021978 82022286 -68761267 + AluSx SINE Alu 1 308 -4 598 266 27 77 chr11 82022315 82022449 -68761104 + MIR SINE MIR 37 157 -105 2206 108 14 0 chr11 82022449 82022737 -68760816 + AluSq SINE Alu 1 292 -21 598 266 27 77 chr11 82022737 82022824 -68760729 + MIR SINE MIR 157 247 -15 258 289 97 0 chr11 82022857 82022971 -68760582 + L2 LINE L2 3126 3250 -63 329 276 82 29 chr11 82023335 82023505 -68760048 + MIR3 SINE MIR 15 193 -15 280 240 94 31 chr11 82024611 82024707 -68758846 + MIR SINE MIR 37 138 -70 265 258 50 82 chr11 82024758 82024902 -68758651 + MIR SINE MIR 47 180 -65 2387 72 31 0 chr11 82025035 82025328 -68758225 + AluSx SINE Alu 1 302 -10 1500 184 81 3 chr11 82025336 82025646 -68757907 - MER2 DNA MER2_type -8 337 4 1734 153 36 11 chr11 82026443 82026756 -68756797 - AluSx SINE Alu 0 320 1 845 297 43 29 chr11 82026813 82027227 -68756326 + L1MC4a LINE L1 5521 5940 -1868 1144 85 13 20 chr11 82027347 82027500 -68756053 - AluSg/x SINE Alu -12 298 147 235 319 115 7 chr11 82027903 82028047 -68755506 + MIR SINE MIR 37 196 -66 293 213 40 0 chr11 82028263 82028338 -68755215 - L1MB7 LINE L1 -24 6160 6083 834 143 256 18 chr11 82028343 82028511 -68755042 + AluJo SINE Alu 6 213 -99 1329 93 66 0 chr11 82028776 82028959 -68754594 + AluSq SINE Alu 1 195 -118 727 216 113 14 chr11 82029114 82029327 -68754226 + MER21B LTR ERV1 573 806 -57 2047 148 24 43 chr11 82029358 82029731 -68753822 + MER47A DNA MER2_type 1 366 0 2301 99 6 3 chr11 82029948 82030260 -68753293 - AluSq SINE Alu 0 313 1 235 270 87 95 chr11 82030261 82030349 -68753204 + L2 LINE L2 3146 3234 -38 853 225 39 47 chr11 82030349 82030607 -68752946 - MIR SINE MIR -3 259 4 235 270 87 95 chr11 82030607 82030644 -68752909 + L2 LINE L2 3234 3270 -2 229 259 17 0 chr11 82030701 82030759 -68752794 - MIR SINE MIR -120 142 84 2080 77 0 11 chr11 82030896 82031157 -68752396 + AluSc SINE Alu 1 258 -51 1352 173 17 21 chr11 82031551 82031788 -68751765 + AluJo SINE Alu 1 236 -76 247 81 0 0 chr11 82031790 82031827 -68751726 + L1MC3 LINE L1 7061 7097 -688 226 272 54 11 chr11 82031827 82031919 -68751634 + MLT1F1 LTR MaLR 35 130 -437 303 146 0 0 chr11 82031920 82031968 -68751585 + L1MC3 LINE L1 7195 7242 -543 2946 224 85 21 chr11 82032094 82032884 -68750669 + MER21B LTR ERV1 19 858 -5 1616 160 39 44 chr11 82032884 82032942 -68750611 + L1MC3 LINE L1 7226 7283 -502 2420 96 3 0 chr11 82032942 82033244 -68750309 + AluSq SINE Alu 1 303 -10 1616 160 39 44 chr11 82033244 82033547 -68750006 + L1MC3 LINE L1 7283 7585 -200 1554 170 47 27 chr11 82033550 82033850 -68749703 + AluJo SINE Alu 1 306 -6 2113 155 52 10 chr11 82033854 82034261 -68749292 + L1MB4 LINE L1 5749 6172 -8 672 184 0 44 chr11 82034271 82034407 -68749146 - AluJb SINE Alu -48 264 135 2068 121 16 3 chr11 82034523 82034828 -68748725 + AluSx SINE Alu 1 309 -3 687 188 265 0 chr11 82035114 82035284 -68748269 + MER20 DNA MER1_type 3 217 -2 2280 108 0 0 chr11 82035391 82035686 -68747867 + AluSg SINE Alu 1 295 -15 817 236 17 99 chr11 82035814 82036080 -68747473 + L1ME3A LINE L1 5792 6078 -92 243 0 0 0 chr11 82036080 82036107 -68747446 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2008 118 0 54 chr11 82036109 82036406 -68747147 - AluSx SINE Alu -31 281 1 817 236 17 99 chr11 82036406 82036525 -68747028 + L1ME3A LINE L1 6079 6161 -9 573 299 130 5 chr11 82037493 82037700 -68745853 + MIR SINE MIR 24 256 -6 1204 106 0 132 chr11 82039271 82039506 -68744047 - AluJo SINE Alu 0 312 109 1433 137 37 79 chr11 82039509 82039859 -68743694 - MER4A LTR ERV1 -10 654 261 418 148 114 0 chr11 82039859 82039947 -68743606 - MER4A LTR ERV1 -566 98 1 679 184 0 0 chr11 82039949 82040058 -68743495 - AluJo SINE Alu -202 110 2 280 229 48 12 chr11 82040058 82040141 -68743412 - MER117 DNA MER1_type -107 90 5 463 323 80 11 chr11 82040146 82040336 -68743217 - MIR SINE MIR -59 203 2 2110 134 3 10 chr11 82040571 82040870 -68742683 + AluSx SINE Alu 1 297 -15 1152 109 41 28 chr11 82040938 82041158 -68742395 - L1MA8 LINE L1 -186 6114 5889 21 57 0 0 chr11 82041218 82041253 -68742300 + AT_rich Low_complexity Low_complexity 1 35 0 279 79 0 0 chr11 82041712 82041750 -68741803 + (A)n Simple_repeat Simple_repeat 1 38 0 495 198 9 26 chr11 82042122 82042238 -68741315 - L1MB8 LINE L1 0 6178 6065 2097 164 151 32 chr11 82042239 82042555 -68740998 - L1MB8 LINE L1 -455 5711 5434 366 23 0 0 chr11 82042555 82042598 -68740955 + (TC)n Simple_repeat Simple_repeat 2 44 0 2097 164 151 32 chr11 82042598 82043157 -68740396 - L1MB8 LINE L1 -732 5434 4729 872 206 47 41 chr11 82043588 82043758 -68739795 + FAM SINE Alu 1 171 -4 1103 131 0 71 chr11 82043808 82043991 -68739562 + AluJo SINE Alu 1 170 -142 306 73 0 0 chr11 82044022 82044063 -68739490 + (TA)n Simple_repeat Simple_repeat 2 42 0 228 159 0 0 chr11 82044063 82044107 -68739446 - LTR66 LTR ERVL -172 438 395 232 219 82 0 chr11 82044107 82044180 -68739373 - L1MC4 LINE L1 -1346 6696 6618 925 140 0 15 chr11 82044180 82044316 -68739237 + AluJb SINE Alu 131 264 -48 850 159 0 15 chr11 82044367 82044499 -68739054 - FLAM_A SINE Alu 0 133 4 23 0 0 0 chr11 82044579 82044602 -68738951 + AT_rich Low_complexity Low_complexity 1 23 0 2285 70 7 3 chr11 82045192 82045499 -68738054 - AluSq SINE Alu 0 308 1 23 0 0 0 chr11 82046112 82046135 -68737418 + AT_rich Low_complexity Low_complexity 1 23 0 2173 97 3 3 chr11 82046388 82046676 -68736877 + AluSg SINE Alu 17 304 -6 2315 97 3 0 chr11 82046690 82046988 -68736565 + AluSq SINE Alu 1 299 -14 231 250 36 0 chr11 82047149 82047205 -68736348 + MIR SINE MIR 85 142 -66 1999 106 27 40 chr11 82047413 82047714 -68735839 + AluSq SINE Alu 1 297 -16 2430 59 3 3 chr11 82047853 82048156 -68735397 + AluY SINE Alu 1 303 -8 2023 221 55 5 chr11 82048911 82049309 -68734244 - MER21B LTR ERV1 -427 436 19 413 227 34 107 chr11 82049286 82049408 -68734145 - MER21B LTR ERV1 -731 132 3 * 230 217 26 139 chr11 82049538 82049653 -68733900 - L1MC4 LINE L1 0 8042 7941 270 221 26 106 chr11 82049654 82049767 -68733786 + MIR SINE MIR 52 155 -107 1365 239 101 88 chr11 82049769 82049952 -68733601 - L1MC4 LINE L1 -95 7947 7768 3887 102 0 12 chr11 82049952 82050469 -68733084 - MER9 LTR ERVK 0 511 1 1365 239 101 88 chr11 82050469 82050959 -68732594 - L1MC4 LINE L1 -274 7768 7265 2227 122 0 6 chr11 82050962 82051274 -68732279 + AluY SINE Alu 1 310 -1 725 165 41 0 chr11 82051281 82051402 -68732151 - FLAM_C SINE Alu -16 127 2 710 113 38 0 chr11 82051646 82051752 -68731801 - HY1 scRNA scRNA -1 111 2 445 292 119 30 chr11 82051829 82052031 -68731522 + MIR SINE MIR 2 221 -41 25 0 0 0 chr11 82052039 82052064 -68731489 + AT_rich Low_complexity Low_complexity 1 25 0 2263 79 7 30 chr11 82052241 82052546 -68731007 + AluSc SINE Alu 1 298 -11 196 327 0 0 chr11 82052560 82052612 -68730941 - L3 LINE CR1 -1 1576 1525 * 321 250 224 31 chr11 82052604 82052746 -68730807 + MER5A DNA MER1_type 8 189 0 450 300 25 50 chr11 82052746 82052906 -68730647 - MIR3 SINE MIR -48 160 5 1111 166 72 127 chr11 82053394 82053477 -68730076 + MER2 DNA MER2_type 4 90 -255 2359 86 7 0 chr11 82053477 82053778 -68729775 + AluY SINE Alu 1 303 -8 1111 166 72 127 chr11 82053778 82053976 -68729577 + MER2 DNA MER2_type 90 263 -82 731 111 0 0 chr11 82053976 82054075 -68729478 - HY3 scRNA scRNA -2 99 1 1111 166 72 127 chr11 82054075 82054154 -68729399 + MER2 DNA MER2_type 263 345 0 866 201 0 0 chr11 82054291 82054445 -68729108 + AluJb SINE Alu 129 282 -30 541 238 67 37 chr11 82054535 82054699 -68728854 - L1MC4a LINE L1 -1936 5872 5704 229 217 0 0 chr11 82054715 82054761 -68728792 - L1MC4a LINE L1 -2181 5627 5582 1891 148 0 47 chr11 82054765 82055082 -68728471 - AluJo SINE Alu -10 302 1 1618 128 94 62 chr11 82055135 82055454 -68728099 + MSTC LTR MaLR 8 325 -103 641 186 62 17 chr11 82055482 82055659 -68727894 - L1MC4a LINE L1 -2368 5440 5256 25 0 0 0 chr11 82055662 82055687 -68727866 + AT_rich Low_complexity Low_complexity 1 25 0 234 299 10 0 chr11 82056164 82056224 -68727329 + (TA)n Simple_repeat Simple_repeat 2 65 -34 201 94 0 0 chr11 82056224 82056256 -68727297 + (TG)n Simple_repeat Simple_repeat 2 33 0 234 299 10 0 chr11 82056256 82056292 -68727261 + (TA)n Simple_repeat Simple_repeat 65 99 0 204 40 0 0 chr11 82056292 82056317 -68727236 + (GA)n Simple_repeat Simple_repeat 2 26 0 573 203 14 70 chr11 82056319 82056462 -68727091 - L1MC5 LINE L1 -73 7888 7754 440 237 205 6 chr11 82057712 82057868 -68725685 + MER58C DNA MER1_type 1 187 -28 1148 217 145 36 chr11 82058259 82058752 -68724801 - MLT1G1 LTR MaLR -3 592 1 2339 101 0 0 chr11 82058863 82059169 -68724384 - AluSg SINE Alu -4 306 1 519 272 72 28 chr11 82059923 82060103 -68723450 - MLT1K LTR MaLR -113 475 288 2157 116 3 0 chr11 82060107 82060409 -68723144 + AluSx SINE Alu 1 303 -9 192 158 0 0 chr11 82060698 82060736 -68722817 + (CCG)n Simple_repeat Simple_repeat 3 40 0 284 279 49 119 chr11 82061543 82061664 -68721889 + L2 LINE L2 2997 3094 -178 1768 162 7 7 chr11 82061664 82061954 -68721599 - AluJb SINE Alu -22 290 1 284 279 49 119 chr11 82061954 82062076 -68721477 + L2 LINE L2 3094 3223 -49 21 0 0 0 chr11 82062083 82062104 -68721449 + AT_rich Low_complexity Low_complexity 1 21 0 245 182 0 0 chr11 82062110 82062154 -68721399 + L2 LINE L2 3010 3053 -219 505 232 221 21 chr11 82062283 82062473 -68721080 + MIR SINE MIR 8 235 -27 254 175 0 0 chr11 82062789 82062829 -68720724 - MLT1C LTR MaLR 0 467 428 1318 181 9 4 chr11 82062835 82063062 -68720491 + AluJb SINE Alu 64 291 -21 279 313 10 30 chr11 82063145 82063244 -68720309 - L2 LINE L2 -226 3046 2950 229 318 0 0 chr11 82063446 82063509 -68720044 + MIR SINE MIR 200 262 0 2275 106 0 10 chr11 82063540 82063842 -68719711 - AluSx SINE Alu -13 299 1 23 68 0 0 chr11 82063898 82063942 -68719611 + AT_rich Low_complexity Low_complexity 1 44 0 209 291 121 48 chr11 82064617 82064782 -68718771 - L2 LINE L2 -278 2994 2818 213 267 143 120 chr11 82065021 82065287 -68718266 + L2 LINE L2 3000 3271 -1 386 243 48 19 chr11 82065371 82065474 -68718079 - MIR3 SINE MIR -90 118 13 1522 174 63 11 chr11 82065905 82066202 -68717351 - AluJb SINE Alu 0 311 1 625 250 45 20 chr11 82066289 82066489 -68717064 - L2 LINE L2 -472 2842 2638 224 342 67 17 chr11 82066676 82066796 -68716757 + MIR3 SINE MIR 4 129 -79 323 269 64 82 chr11 82066823 82066887 -68716666 - MIR SINE MIR -48 214 150 1873 135 62 0 chr11 82066887 82067175 -68716378 - AluSx SINE Alu -6 306 1 323 269 64 82 chr11 82067175 82067281 -68716272 - MIR SINE MIR -112 150 47 1566 156 17 24 chr11 82067415 82067703 -68715850 + L1MC4 LINE L1 6773 7058 -984 1811 246 133 23 chr11 82067710 82067819 -68715734 + L1MC4 LINE L1 7238 7334 -708 2439 52 3 20 chr11 82067819 82068125 -68715428 + AluY SINE Alu 1 301 -10 1811 246 133 23 chr11 82068125 82068542 -68715011 + L1MC4 LINE L1 7334 7842 -200 1752 161 0 39 chr11 82068542 82068650 -68714903 + AluJo SINE Alu 1 112 -200 2336 66 42 0 chr11 82068650 82068938 -68714615 + AluY SINE Alu 1 300 -11 1752 161 0 39 chr11 82068938 82069139 -68714414 + AluJo SINE Alu 112 298 -14 1811 246 133 23 chr11 82069139 82069218 -68714335 + L1MC4 LINE L1 7842 7911 -131 2395 95 3 0 chr11 82069385 82069690 -68713863 + AluSp SINE Alu 1 306 -7 304 227 227 0 chr11 82069692 82069767 -68713786 - MER31A LTR ERV1 -41 444 353 264 250 148 11 chr11 82069782 82069870 -68713683 - MIR SINE MIR -2 260 161 197 218 200 0 chr11 82069904 82069959 -68713594 - MIR SINE MIR -195 67 2 714 198 85 28 chr11 82070637 82070822 -68712731 - MLT1D LTR MaLR -35 432 259 1809 135 0 103 chr11 82070822 82070931 -68712622 - AluJb SINE Alu -7 305 186 2222 82 7 16 chr11 82070931 82071237 -68712316 - AluSp SINE Alu -10 303 1 1809 135 0 103 chr11 82071237 82071467 -68712086 - AluJb SINE Alu -126 186 1 714 198 85 28 chr11 82071467 82071650 -68711903 - MLT1D LTR MaLR -208 259 1 1743 223 66 20 chr11 82071759 82072451 -68711102 + L1M4c LINE L1 2189 2899 -3483 1117 254 111 64 chr11 82073791 82074307 -68709246 + MLT1F1 LTR MaLR 3 567 0 2442 61 7 0 chr11 82075520 82075816 -68707737 - AluY SINE Alu -13 298 1 1587 191 33 10 chr11 82075954 82076257 -68707296 - AluJo SINE Alu -2 310 1 2892 111 12 63 chr11 82076686 82077165 -68706388 + L1PA15 LINE L1 5709 6163 -2 1705 222 21 14 chr11 82077671 82078094 -68705459 - L1M4 LINE L1 -981 5165 4740 2209 121 0 3 chr11 82078109 82078416 -68705137 - AluSx SINE Alu -6 306 1 2086 127 3 13 chr11 82078418 82078718 -68704835 - AluSx SINE Alu -15 297 1 905 138 0 35 chr11 82078718 82078863 -68704690 - AluJo SINE Alu -172 140 1 2296 86 3 7 chr11 82078981 82079282 -68704271 + AluSc SINE Alu 1 300 -9 1349 142 5 9 chr11 82079291 82079503 -68704050 + AluJo SINE Alu 87 297 -15 285 275 126 72 chr11 82079767 82079974 -68703579 - L3 LINE CR1 -3 1574 1357 2115 117 3 7 chr11 82080188 82080486 -68703067 + AluSx SINE Alu 1 297 -15 2288 52 42 11 chr11 82080513 82080800 -68702753 + AluY SINE Alu 1 296 -15 402 230 18 53 chr11 82080805 82080918 -68702635 + MIR SINE MIR 145 253 -9 2038 122 178 4 chr11 82081103 82081576 -68701977 - MER51A LTR ERV1 -9 625 1 232 259 35 47 chr11 82082951 82083036 -68700517 - MIR SINE MIR -71 191 108 21 82 0 0 chr11 82083584 82083633 -68699920 + AT_rich Low_complexity Low_complexity 1 49 0 273 344 31 21 chr11 82083938 82084034 -68699519 + MIR SINE MIR 57 153 -109 189 0 0 0 chr11 82084197 82084218 -68699335 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1488 211 0 7 chr11 82084220 82084495 -68699058 - AluJb SINE Alu -30 282 10 1932 101 25 18 chr11 82084664 82084942 -68698611 - AluSg SINE Alu -29 281 2 2052 118 0 14 chr11 82085034 82085367 -68698186 - AluSx SINE Alu 0 329 1 781 231 179 65 chr11 82085407 82085694 -68697859 - MLT1J2 LTR MaLR -14 436 96 2134 137 0 3 chr11 82085694 82086007 -68697546 - AluSx SINE Alu 0 312 1 781 231 179 65 chr11 82086007 82086087 -68697466 - MLT1J2 LTR MaLR -354 96 27 314 275 118 34 chr11 82086571 82086749 -68696804 + MIR3 SINE MIR 7 199 -9 2475 59 0 43 chr11 82087271 82087593 -68695960 - AluY SINE Alu -3 308 1 2178 251 86 79 chr11 82087690 82087732 -68695821 + L2 LINE L2 2159 2199 -1114 1693 176 27 7 chr11 82087732 82088033 -68695520 - AluJb SINE Alu -3 309 3 2178 251 86 79 chr11 82088033 82088788 -68694765 + L2 LINE L2 2199 2973 -340 2097 128 0 3 chr11 82088788 82089078 -68694475 - AluSc SINE Alu -20 289 1 2178 251 86 79 chr11 82089078 82089406 -68694147 + L2 LINE L2 2973 3298 -15 30 69 0 0 chr11 82089411 82089469 -68694084 + AT_rich Low_complexity Low_complexity 1 58 0 2122 226 74 24 chr11 82089492 82090128 -68693425 - L1MC4a LINE L1 -1741 6067 5400 2345 93 0 3 chr11 82090383 82090684 -68692869 + AluSx SINE Alu 1 300 -12 38 22 0 0 chr11 82090729 82090774 -68692779 + AT_rich Low_complexity Low_complexity 1 45 0 391 299 65 19 chr11 82090822 82090976 -68692577 - MIR SINE MIR -50 212 52 2229 117 13 0 chr11 82091235 82091535 -68692018 - AluSq SINE Alu -9 304 1 291 243 159 0 chr11 82091960 82092067 -68691486 + L1ME LINE L1 5508 5631 -490 1466 138 23 0 chr11 82092065 82092282 -68691271 - AluSg/x SINE Alu 0 310 89 252 320 128 13 chr11 82092415 82092571 -68690982 - MIR3 SINE MIR -3 205 32 232 207 61 61 chr11 82093209 82093262 -68690291 + L2 LINE L2 3227 3282 -31 836 103 16 0 chr11 82093262 82093388 -68690165 + L1PA4 LINE L1 6028 6155 0 232 207 61 61 chr11 82093388 82093416 -68690137 + L2 LINE L2 3281 3308 -5 261 332 98 39 chr11 82093964 82094297 -68689256 + L2 LINE L2 2695 3050 -222 2322 90 3 10 chr11 82095428 82095727 -68687826 - AluSp SINE Alu -16 297 1 300 158 0 0 chr11 82095771 82095828 -68687725 + T-rich Low_complexity Low_complexity 1 57 0 208 415 85 0 chr11 82095968 82096086 -68687467 - MIR3 SINE MIR -78 130 3 198 333 0 0 chr11 82096211 82096262 -68687291 + L2 LINE L2 3210 3260 -12 248 256 33 44 chr11 82096683 82096773 -68686780 + L3 LINE CR1 1484 1572 -5 2064 146 7 0 chr11 82097024 82097319 -68686234 - AluJb SINE Alu -15 297 1 343 175 0 0 chr11 82097604 82097661 -68685892 + L2 LINE L2 3216 3272 0 2504 90 6 0 chr11 82097969 82098280 -68685273 + AluSp SINE Alu 1 313 0 1055 137 79 5 chr11 82098363 82098553 -68685000 + MER3 DNA MER1_type 6 209 0 2186 117 7 0 chr11 82098574 82098872 -68684681 - AluSq SINE Alu -13 300 1 1378 177 161 4 chr11 82098934 82099188 -68684365 + AluJb SINE Alu 3 296 -6 1700 178 3 28 chr11 82099196 82099315 -68684238 + AluJo SINE Alu 1 121 -191 234 0 0 0 chr11 82099315 82099341 -68684212 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1700 178 3 28 chr11 82099341 82099541 -68684012 + AluJo SINE Alu 121 312 0 432 323 64 0 chr11 82099759 82099979 -68683574 - HsTC2c DNA Tc2 -11 718 485 479 152 27 62 chr11 82100019 82100131 -68683422 - HsTC2c DNA Tc2 -348 381 274 1928 243 100 5 chr11 82100144 82100715 -68682838 - L1ME3A LINE L1 -31 6139 5515 463 284 86 27 chr11 82100803 82101025 -68682528 - HsTC2c DNA Tc2 -487 242 8 568 309 99 26 chr11 82101032 82101336 -68682217 - L2 LINE L2 -163 3150 2825 272 314 34 8 chr11 82101344 82101462 -68682091 - L2 LINE L2 -2386 928 808 346 315 82 14 chr11 82101963 82102109 -68681444 - MIR SINE MIR -57 205 50 2204 110 3 16 chr11 82103814 82104131 -68679422 - AluSp SINE Alu 0 313 1 615 216 76 17 chr11 82104140 82104240 -68679313 - L1ME3A LINE L1 -160 6010 5917 2174 110 23 13 chr11 82104240 82104539 -68679014 - AluSq SINE Alu -9 304 3 615 216 76 17 chr11 82104539 82104918 -68678635 - L1ME3A LINE L1 -253 5917 5385 2344 81 3 3 chr11 82105349 82105645 -68677908 - AluSg SINE Alu -14 296 1 389 290 54 54 chr11 82105705 82105891 -68677662 + MIR SINE MIR 76 261 -1 259 271 113 38 chr11 82105876 82106009 -68677544 - L2 LINE L2 -57 3256 3114 * 192 340 75 0 chr11 82106439 82106533 -68677020 - L2 LINE L2 -222 3050 2950 236 203 95 54 chr11 82106546 82106620 -68676933 + MIR3 SINE MIR 116 192 -16 255 269 181 69 chr11 82107253 82107342 -68676211 + MIR SINE MIR 10 88 -174 300 218 282 14 chr11 82107342 82107484 -68676069 + MER104 DNA MER2_type 1 180 0 255 269 181 69 chr11 82107484 82107554 -68675999 + MIR SINE MIR 88 187 -75 183 320 160 10 chr11 82107671 82107771 -68675782 - MIR SINE MIR -38 224 110 261 323 78 5 chr11 82108135 82108352 -68675201 - L1MEc LINE L1 -4579 1817 1585 363 224 46 66 chr11 82108437 82108633 -68674920 - L1MEc LINE L1 -4906 1299 1108 802 161 0 29 chr11 82108849 82108986 -68674567 + FLAM_C SINE Alu 1 133 0 29 0 0 0 chr11 82109118 82109147 -68674406 + AT_rich Low_complexity Low_complexity 1 29 0 482 265 15 8 chr11 82109248 82109380 -68674173 - L1MEc LINE L1 -4576 1820 1688 6723 64 13 57 chr11 82109808 82110804 -68672749 - SVA Other Other -2 1384 433 1984 104 42 24 chr11 82110817 82111320 -68672233 - SVA Other Other -518 868 494 297 212 34 102 chr11 82111819 82111937 -68671616 - MIR SINE MIR -113 149 40 360 255 120 18 chr11 82111950 82112111 -68671442 + MIR SINE MIR 34 221 -11 2038 138 3 16 chr11 82112113 82112425 -68671128 + AluJb SINE Alu 1 308 -4 585 340 114 13 chr11 82112486 82112792 -68670761 + L2 LINE L2 2469 2805 -509 288 365 175 18 chr11 82113087 82113419 -68670134 + L2 LINE L2 2866 3249 -23 324 272 0 25 chr11 82113481 82113562 -68669991 + MIR SINE MIR 15 93 -169 212 339 82 46 chr11 82114092 82114287 -68669266 + L2 LINE L2 3030 3231 -41 402 290 9 0 chr11 82114968 82115075 -68668478 + MIR SINE MIR 47 154 -108 275 292 217 35 chr11 82115091 82115317 -68668236 - L2 LINE L2 0 3272 3006 283 315 49 44 chr11 82115981 82116184 -68667369 + L2 LINE L2 2636 2839 -475 1830 167 33 3 chr11 82116703 82117002 -68666551 + AluJb SINE Alu 1 308 -4 493 161 9 9 chr11 82117002 82117114 -68666439 + G-rich Low_complexity Low_complexity 3 114 0 412 306 99 4 chr11 82117419 82117651 -68665902 - L1ME LINE L1 -356 5765 5512 238 341 0 0 chr11 82118973 82119058 -68664495 - MIR3 SINE MIR -43 165 81 464 286 37 12 chr11 82119075 82119236 -68664317 + MIR3 SINE MIR 6 170 -38 215 216 135 14 chr11 82120068 82120142 -68663411 - MIR SINE MIR -117 145 63 393 333 20 27 chr11 82120366 82120528 -68663025 + MIR3 SINE MIR 2 163 -45 628 183 42 0 chr11 82122278 82122398 -68661155 - MIR SINE MIR -117 145 21 1942 149 10 10 chr11 82122566 82122867 -68660686 + AluJo SINE Alu 1 301 -11 268 267 168 17 chr11 82124604 82124759 -68658794 + MIR SINE MIR 2 189 -19 1497 236 52 5 chr11 82124766 82125211 -68658342 + Charlie4a DNA MER1_type 43 508 0 225 65 0 0 chr11 82125375 82125406 -68658147 + (CGAGG)n Simple_repeat Simple_repeat 5 35 0 315 330 32 33 chr11 82125599 82125789 -68657764 + MIR3 SINE MIR 4 190 -52 195 282 47 47 chr11 82126096 82126181 -68657372 + MIR SINE MIR 57 141 -121 567 304 62 0 chr11 82126672 82126866 -68656687 - MIR SINE MIR -12 250 45 384 218 183 42 chr11 82126920 82127062 -68656491 + MIR SINE MIR 2 163 -99 403 354 72 9 chr11 82127499 82127722 -68655831 + MIR SINE MIR 20 256 -6 198 268 179 0 chr11 82128760 82128816 -68654737 + MIR SINE MIR 36 101 -161 395 309 34 0 chr11 82129047 82129196 -68654357 - MIR3 SINE MIR -18 190 37 592 190 261 0 chr11 82129631 82129773 -68653780 + MER5A DNA MER1_type 9 187 -2 192 265 120 26 chr11 82130129 82130246 -68653307 - MIR3 SINE MIR -3 205 78 335 278 26 43 chr11 82130765 82130880 -68652673 + MLT1K LTR MaLR 278 390 -198 253 274 131 13 chr11 82130910 82131063 -68652490 + L2 LINE L2 3076 3246 -26 184 268 127 0 chr11 82131227 82131298 -68652255 - MIR3 SINE MIR -114 94 15 504 158 144 50 chr11 82131439 82131578 -68651975 + MIR3 SINE MIR 16 167 -41 345 234 80 80 chr11 82132534 82132671 -68650882 - MIR3 SINE MIR -67 141 5 523 245 103 16 chr11 82133017 82133158 -68650395 + MIR SINE MIR 33 198 -64 2522 66 0 0 chr11 82133158 82133461 -68650092 - AluY SINE Alu -8 303 1 523 245 103 16 chr11 82133461 82133529 -68650024 + MIR SINE MIR 198 259 -3 274 244 26 13 chr11 82133923 82134001 -68649552 - L2 LINE L2 -23 3290 3212 219 325 32 16 chr11 82134059 82134185 -68649368 - L2 LINE L2 -110 3203 3076 483 254 165 18 chr11 82134346 82134549 -68649004 + MIR SINE MIR 22 257 -5 303 321 18 18 chr11 82134610 82134722 -68648831 + MIR SINE MIR 19 130 -132 345 266 75 0 chr11 82135662 82135756 -68647797 + L2 LINE L2 3172 3272 0 205 274 24 24 chr11 82137311 82137395 -68646158 - MIR SINE MIR -65 143 60 361 286 24 16 chr11 82137409 82137535 -68646018 - MIR3 SINE MIR -22 186 60 338 225 54 45 chr11 82137665 82137776 -68645777 - MIR SINE MIR -63 145 34 352 311 116 54 chr11 82138052 82138293 -68645260 + L2 LINE L2 2932 3187 -85 188 271 122 47 chr11 82138527 82138634 -68644919 - MIR SINE MIR -62 146 32 792 251 145 82 chr11 82138876 82138992 -68644561 - L2 LINE L2 0 3313 3206 2187 131 0 6 chr11 82138992 82139306 -68644247 - AluSx SINE Alu 0 312 1 792 251 145 82 chr11 82139306 82139699 -68643854 - L2 LINE L2 -107 3206 2776 189 288 51 0 chr11 82139862 82139921 -68643632 - L2 LINE L2 -1 3271 3210 342 231 185 23 chr11 82139944 82140074 -68643479 + MIR3 SINE MIR 10 160 -48 202 356 68 34 chr11 82140390 82140567 -68642986 - L3 LINE CR1 -105 1472 1290 289 294 157 0 chr11 82140866 82140968 -68642585 - L3 LINE CR1 -39 1538 1421 304 315 85 24 chr11 82141730 82141895 -68641658 + L1ME4a LINE L1 5772 5946 -175 22 35 0 0 chr11 82143306 82143335 -68640218 + GC_rich Low_complexity Low_complexity 1 29 0 182 277 213 28 chr11 82143756 82143897 -68639656 - L2 LINE L2 -5 3267 3101 524 218 63 14 chr11 82144046 82144188 -68639365 + MIR SINE MIR 108 256 -6 279 261 45 68 chr11 82144953 82145129 -68638424 - L2 LINE L2 -276 2996 2825 242 250 94 88 chr11 82145313 82145473 -68638080 + MIR SINE MIR 46 206 -56 207 321 175 7 chr11 82145568 82145705 -68637848 - L2 LINE L2 -1 3271 3112 517 249 141 27 chr11 82145932 82146270 -68637283 - L2 LINE L2 -212 3060 2694 2205 81 29 26 chr11 82146277 82146584 -68636969 + AluY SINE Alu 1 308 -3 449 271 164 21 chr11 82147486 82147705 -68635848 - MIR SINE MIR -6 256 17 257 293 138 0 chr11 82148150 82148266 -68635287 - L2 LINE L2 -493 2821 2690 607 269 141 19 chr11 82148327 82148583 -68634970 - LTR33 LTR ERVL 0 521 235 244 290 51 68 chr11 82148637 82148813 -68634740 - L2 LINE L2 -706 2608 2436 2470 77 10 13 chr11 82149292 82149602 -68633951 - AluY SINE Alu -2 309 1 387 194 51 189 chr11 82150021 82150133 -68633420 + MIR SINE MIR 99 180 -82 1709 170 0 28 chr11 82150133 82150422 -68633131 + AluJo SINE Alu 5 285 -27 387 194 51 189 chr11 82150422 82150484 -68633069 + MIR SINE MIR 180 249 -13 192 355 126 17 chr11 82150776 82151007 -68632546 - L2 LINE L2 -5 3267 3012 960 147 7 7 chr11 82151067 82151217 -68632336 - MER5A DNA MER1_type -39 150 1 1141 219 9 9 chr11 82151451 82151679 -68631874 - MIR SINE MIR -14 248 21 207 0 0 0 chr11 82152929 82152952 -68630601 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1723 110 80 34 chr11 82153076 82153339 -68630214 - AluSx SINE Alu -27 285 11 270 81 0 0 chr11 82153584 82153621 -68629932 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 339 257 10 59 chr11 82153625 82153726 -68629827 - L2 LINE L2 -17 3255 3160 263 322 158 23 chr11 82153811 82153988 -68629565 - MIR SINE MIR -39 223 23 192 40 0 0 chr11 82154049 82154074 -68629479 + (GA)n Simple_repeat Simple_repeat 1 25 0 866 207 128 6 chr11 82154434 82154748 -68628805 - L1MCc LINE L1 -2751 4190 3833 2002 118 24 10 chr11 82154748 82155114 -68628439 - AluSx SINE Alu 0 312 1 866 207 128 6 chr11 82155114 82155128 -68628425 - L1MCc LINE L1 -3108 3833 3822 * 1292 254 144 31 chr11 82155125 82155744 -68627809 - L1MCc LINE L1 -4598 2524 1977 1150 126 6 33 chr11 82155744 82155927 -68627626 - L1PA8A LINE L1 -2 6129 5952 1292 254 144 31 chr11 82155927 82156159 -68627394 - L1MCc LINE L1 -5145 1977 1773 2142 86 54 0 chr11 82156159 82156438 -68627115 - AluSq SINE Alu -19 294 1 1292 254 144 31 chr11 82156438 82156719 -68626834 - L1MCc LINE L1 -5349 1773 1052 842 125 7 7 chr11 82156730 82156874 -68626679 - L1MB8 LINE L1 0 6178 6035 473 228 152 0 chr11 82156902 82157047 -68626506 + L1MB5 LINE L1 5972 6138 -36 380 175 68 0 chr11 82157044 82157147 -68626406 - L1MB8 LINE L1 -261 5923 5814 * 2365 107 7 0 chr11 82157378 82157688 -68625865 - AluSx SINE Alu 0 312 1 567 262 87 12 chr11 82158085 82158257 -68625296 + MIR SINE MIR 47 231 -31 2438 93 0 19 chr11 82158272 82158584 -68624969 + AluSg SINE Alu 1 306 -4 598 266 27 77 chr11 82158614 82158748 -68624805 + MIR SINE MIR 37 157 -105 2206 108 14 0 chr11 82158748 82159036 -68624517 + AluSq SINE Alu 1 292 -21 598 266 27 77 chr11 82159036 82159123 -68624430 + MIR SINE MIR 157 247 -15 258 289 97 0 chr11 82159156 82159270 -68624283 + L2 LINE L2 3126 3250 -63 329 276 82 29 chr11 82159634 82159804 -68623749 + MIR3 SINE MIR 15 193 -15 280 240 94 31 chr11 82160909 82161005 -68622548 + MIR SINE MIR 37 138 -70 265 258 50 82 chr11 82161056 82161200 -68622353 + MIR SINE MIR 47 180 -65 2342 76 31 0 chr11 82161333 82161624 -68621929 + AluSx SINE Alu 1 300 -12 1500 184 81 3 chr11 82161632 82161942 -68621611 - MER2 DNA MER2_type -8 337 4 1822 145 33 11 chr11 82162739 82163049 -68620504 - AluSx SINE Alu 0 316 1 825 310 29 24 chr11 82163106 82163487 -68620066 + L1MC4a LINE L1 5521 5903 -1905 608 190 29 7 chr11 82163800 82163937 -68619616 + AluSc SINE Alu 137 276 -33 737 241 76 34 chr11 82165296 82165335 -68618218 - MIR SINE MIR 0 262 226 2326 108 0 0 chr11 82165335 82165632 -68617921 + AluSx SINE Alu 1 297 -15 737 241 76 34 chr11 82165632 82165829 -68617724 - MIR SINE MIR -36 226 16 234 241 83 90 chr11 82166137 82166270 -68617283 - MIR3 SINE MIR -63 145 14 285 290 11 11 chr11 82166303 82166396 -68617157 + MIR3 SINE MIR 76 168 -40 231 36 0 0 chr11 82167933 82167961 -68615592 + (GA)n Simple_repeat Simple_repeat 1 28 0 328 274 119 50 chr11 82168282 82168483 -68615070 - MIR SINE MIR -32 230 16 207 0 0 0 chr11 82169142 82169165 -68614388 + (CAGCC)n Simple_repeat Simple_repeat 4 26 0 1836 261 119 47 chr11 82169312 82170277 -68613276 + L2 LINE L2 1489 2523 -791 1154 247 156 8 chr11 82170299 82170982 -68612571 - L1ME3A LINE L1 -3 6167 5320 468 262 134 57 chr11 82171112 82171340 -68612213 - L1ME LINE L1 -523 5639 5430 2320 96 0 0 chr11 82171340 82171633 -68611920 - AluSx SINE Alu -19 293 1 468 262 134 57 chr11 82171633 82171826 -68611727 - L1ME LINE L1 -732 5430 5253 2183 123 3 0 chr11 82171826 82172126 -68611427 - AluSx SINE Alu -11 301 1 468 262 134 57 chr11 82172126 82172516 -68611037 - L1ME LINE L1 -909 5253 4765 2433 201 56 65 chr11 82172516 82173198 -68610355 + MER54B LTR ERVL 3 678 -115 484 273 52 101 chr11 82173578 82173945 -68609608 - HERVL74 LTR ERVL -751 4934 4586 * 635 196 26 33 chr11 82173933 82174086 -68609467 - HERVL74 LTR ERVL -1612 4073 3922 825 169 12 30 chr11 82174093 82174259 -68609294 - HERVL74 LTR ERVL -2044 3641 3479 * 5160 195 43 12 chr11 82174240 82175766 -68607787 - HERVL74 LTR ERVL -2345 3340 1693 246 80 60 0 chr11 82175843 82175893 -68607660 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 755 319 94 34 chr11 82176038 82176959 -68606594 + L1M4 LINE L1 3015 3879 -2267 1835 72 5 0 chr11 82176959 82177181 -68606372 - AluSg/x SINE Alu -18 294 72 755 319 94 34 chr11 82177181 82177752 -68605801 + L1M4 LINE L1 3879 4611 -1535 2232 107 0 3 chr11 82177752 82178043 -68605510 - AluSg SINE Alu -20 290 1 755 319 94 34 chr11 82178043 82178137 -68605416 + L1M4 LINE L1 4611 4698 -1448 1004 226 104 48 chr11 82178244 82178299 -68605254 - L1ME LINE L1 -1820 4326 4275 3543 106 24 4 chr11 82178299 82178800 -68604753 + MER9 LTR ERVK 1 511 0 1004 226 104 48 chr11 82178800 82179053 -68604500 - L1ME LINE L1 -1871 4275 4001 243 114 0 0 chr11 82179092 82179136 -68604417 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 37 0 0 0 chr11 82179215 82179252 -68604301 + AT_rich Low_complexity Low_complexity 1 37 0 408 88 0 44 chr11 82179426 82179494 -68604059 - SVA Other Other -533 853 789 204 290 16 0 chr11 82179804 82179866 -68603687 + MIR SINE MIR 59 121 -87 266 376 26 8 chr11 82180187 82180304 -68603249 - MIR3 SINE MIR -87 121 3 249 250 83 12 chr11 82180793 82180877 -68602676 - MIR SINE MIR -92 170 81 886 275 53 44 chr11 82180945 82181305 -68602248 + L2 LINE L2 2135 2497 -817 982 101 31 0 chr11 82181422 82181551 -68602002 - AluSq/x SINE Alu -180 133 1 241 346 0 0 chr11 82181628 82181709 -68601844 + L2 LINE L2 3179 3259 -54 237 263 50 0 chr11 82181748 82181828 -68601725 - L3 LINE CR1 -294 1283 1200 336 164 27 14 chr11 82181944 82182017 -68601536 - MER103 DNA DNA -80 86 13 2102 106 3 7 chr11 82182116 82182408 -68601145 + AluSg SINE Alu 1 291 -19 1649 238 74 8 chr11 82182513 82182987 -68600566 + MLT1D LTR MaLR 1 505 0 267 0 0 0 chr11 82183152 82183183 -68600370 - AluS SINE Alu -206 96 66 365 360 49 21 chr11 82183493 82183882 -68599671 + L2 LINE L2 2292 2691 -623 372 325 66 7 chr11 82185004 82185155 -68598398 + MIR SINE MIR 29 146 -62 183 186 0 0 chr11 82186011 82186054 -68597499 + (CACCAT)n Simple_repeat Simple_repeat 4 46 0 521 317 31 19 chr11 82186099 82186260 -68597293 - MIR SINE MIR -80 182 20 2279 102 3 0 chr11 82186280 82186573 -68596980 + AluSg SINE Alu 1 294 -16 234 329 0 0 chr11 82186898 82186974 -68596579 + (TGGA)n Simple_repeat Simple_repeat 2 77 0 253 328 46 8 chr11 82186996 82187127 -68596426 + L2 LINE L2 2226 2361 -953 805 286 59 40 chr11 82187272 82187831 -68595722 - L2 LINE L2 -32 3281 2714 573 302 80 48 chr11 82187840 82187994 -68595559 + L1 LINE L1 3490 3638 -2508 1729 189 3 3 chr11 82187994 82188290 -68595263 + AluJb SINE Alu 1 296 -16 573 302 80 48 chr11 82188290 82188671 -68594882 + L1 LINE L1 3638 4080 -2066 760 153 0 53 chr11 82188920 82189070 -68594483 + FLAM_C SINE Alu 2 143 0 290 141 31 0 chr11 82189078 82189142 -68594411 + L1MD2 LINE L1 5373 5438 -921 9084 176 12 28 chr11 82189154 82189742 -68593811 + L1PA16 LINE L1 3207 3803 -2363 2464 90 0 0 chr11 82189742 82190041 -68593512 + AluSq SINE Alu 1 299 -14 9084 176 12 28 chr11 82190041 82192114 -68591439 + L1PA16 LINE L1 3803 5829 -337 1591 142 54 27 chr11 82192114 82192410 -68591143 + AluJb SINE Alu 1 304 -8 9084 176 12 28 chr11 82192410 82192437 -68591116 + L1PA16 LINE L1 5829 5855 -311 588 178 8 0 chr11 82192480 82192598 -68590955 + L1 LINE L1 4921 5039 -1107 2011 119 16 13 chr11 82192598 82192895 -68590658 + L1PA16 LINE L1 5855 6166 0 2735 228 45 41 chr11 82192897 82193584 -68589969 + L1MD2 LINE L1 5429 6123 -236 2355 73 35 0 chr11 82193584 82193873 -68589680 + AluSg SINE Alu 1 299 -11 2735 228 45 41 chr11 82193873 82194101 -68589452 + L1MD2 LINE L1 6123 6349 -10 291 265 53 41 chr11 82194140 82194310 -68589243 + L1ME3A LINE L1 4497 4668 -1478 305 172 31 0 chr11 82194390 82194454 -68589099 + L2 LINE L2 3248 3313 0 2132 122 3 3 chr11 82194475 82194787 -68588766 + AluSx SINE Alu 1 312 0 225 333 7 7 chr11 82194877 82195015 -68588538 + L1ME3A LINE L1 4789 4926 -1220 3557 137 12 0 chr11 82195271 82195775 -68587778 - MER41E LTR ERV1 -2 510 1 225 242 152 0 chr11 82195997 82196063 -68587490 - MLT1L LTR MaLR -344 271 196 1212 260 62 62 chr11 82196157 82197072 -68586481 + L1ME3A LINE L1 4962 5886 -284 282 133 22 0 chr11 82197307 82197352 -68586201 + L1MC4 LINE L1 6958 7003 -1039 26517 155 17 19 chr11 82197371 82203841 -68579712 + L1PA10 LINE L1 10 6483 0 924 171 184 16 chr11 82203842 82203855 -68579698 + L1MC4 LINE L1 6999 7008 -1034 2108 73 0 4 chr11 82203855 82204140 -68579413 + AluY SINE Alu 34 311 0 924 171 184 16 chr11 82204140 82204371 -68579182 + L1MC4 LINE L1 7008 7284 -758 262 230 81 46 chr11 82204404 82204491 -68579062 + L3 LINE CR1 1189 1278 -299 1758 218 24 32 chr11 82204560 82204937 -68578616 - MLT1A2 LTR MaLR 0 374 1 1052 284 85 50 chr11 82205287 82205922 -68577631 - L1M4 LINE L1 -2079 4067 3411 609 226 7 0 chr11 82205981 82206127 -68577426 + L1MC1 LINE L1 4567 4713 -1433 6760 157 183 28 chr11 82206128 82206359 -68577194 + MER52A LTR ERV1 1 195 -1560 2061 93 3 31 chr11 82206359 82206702 -68576851 + AluSx SINE Alu 1 335 0 6760 157 183 28 chr11 82206702 82207989 -68575564 + MER52A LTR ERV1 195 1755 0 479 250 39 0 chr11 82207990 82208118 -68575435 + L1MC1 LINE L1 4712 4844 -1302 1879 140 90 23 chr11 82208118 82208201 -68575352 + MER47A DNA MER2_type 1 77 -2246 1910 120 86 46 chr11 82208201 82208527 -68575026 - MER44D DNA MER2_type 0 609 1 1879 140 90 23 chr11 82208527 82208786 -68574767 + MER47A DNA MER2_type 77 366 0 1082 218 8 0 chr11 82208786 82209020 -68574533 + L1MC1 LINE L1 4843 5078 -1068 838 156 0 0 chr11 82209056 82209178 -68574375 - FLAM_C SINE Alu -13 130 9 3457 170 15 46 chr11 82209188 82209445 -68574108 + L1MC1 LINE L1 5080 5344 -989 1044 148 37 12 chr11 82209445 82209607 -68573946 + FRAM SINE Alu 1 166 0 3457 170 15 46 chr11 82209607 82210167 -68573386 + L1MC1 LINE L1 5344 5879 -454 383 216 0 0 chr11 82210177 82210251 -68573302 - MLT1F LTR MaLR -466 76 3 433 299 78 42 chr11 82210259 82210543 -68573010 - L1M4 LINE L1 -2763 3383 3090 1172 160 0 0 chr11 82210547 82210722 -68572831 - FAM SINE Alu -2 47 1 818 293 67 41 chr11 82210753 82211483 -68572070 - L1M4 LINE L1 -3094 3052 2304 1751 121 90 33 chr11 82211489 82211980 -68571573 - MER51A LTR ERV1 0 634 27 1229 282 108 40 chr11 82212019 82212699 -68570854 + L1MC4a LINE L1 4328 4646 -1500 1773 165 0 14 chr11 82212699 82213015 -68570538 + AluJb SINE Alu 1 312 0 1229 282 108 40 chr11 82213015 82213824 -68569729 + L1MC4a LINE L1 4646 5398 -748 2158 99 0 7 chr11 82214018 82214326 -68569227 - AluSg SINE Alu 0 306 1 230 222 167 19 chr11 82214660 82214768 -68568785 - MIR3 SINE MIR -23 185 62 463 304 29 0 chr11 82215164 82215305 -68568248 - MIR SINE MIR -58 150 28 180 77 0 0 chr11 82215499 82215525 -68568028 + (CAT)n Simple_repeat Simple_repeat 1 26 0 295 313 0 0 chr11 82215616 82215696 -68567857 + L2 LINE L2 3234 3313 0 2062 158 49 0 chr11 82216381 82216749 -68566804 + MER58D DNA MER1_type 1 386 0 218 276 32 128 chr11 82216865 82217021 -68566532 + L2 LINE L2 2944 3084 -188 2250 110 13 3 chr11 82217043 82217352 -68566201 + AluSx SINE Alu 1 312 0 286 200 0 71 chr11 82218395 82218465 -68565088 - MIR SINE MIR -12 250 186 * 360 281 0 42 chr11 82218457 82218553 -68565000 - L2 LINE L2 0 3313 3222 380 283 51 29 chr11 82218577 82218715 -68564838 - MIR SINE MIR -75 187 47 241 328 99 72 chr11 82218839 82219132 -68564421 + L2 LINE L2 2972 3272 0 318 276 165 24 chr11 82219194 82219364 -68564189 - MIR SINE MIR -21 241 48 212 176 0 0 chr11 82219921 82219955 -68563598 - MER5B DNA MER1_type -138 40 7 305 300 194 12 chr11 82220287 82220502 -68563051 + MIR SINE MIR 12 250 -12 1045 194 75 32 chr11 82221286 82221538 -68562015 - L1ME3 LINE L1 -1 6161 5899 785 163 10 134 chr11 82221543 82221598 -68561955 + MER20 DNA MER1_type 14 74 -145 2520 60 3 3 chr11 82221598 82221898 -68561655 - AluY SINE Alu -11 300 1 785 163 10 134 chr11 82221898 82222044 -68561509 + MER20 DNA MER1_type 74 190 -29 2110 183 132 20 chr11 82222056 82222510 -68561043 - MLT1D LTR MaLR 0 505 1 1232 192 94 0 chr11 82222513 82222779 -68560774 - L1ME3 LINE L1 -359 5811 5521 294 310 95 84 chr11 82223314 82223588 -68559965 + L2 LINE L2 2996 3272 0 2162 82 0 0 chr11 82223688 82223956 -68559597 + AluSx SINE Alu 1 268 -44 937 358 89 20 chr11 82224562 82225314 -68558239 + L2 LINE L2 2016 2819 -495 1757 271 94 37 chr11 82225325 82226482 -68557071 + L1M4 LINE L1 3103 4325 -1821 388 302 56 22 chr11 82226590 82226822 -68556731 + L1M4 LINE L1 4797 5036 -1110 211 211 0 0 chr11 82226823 82226861 -68556692 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 338 241 45 18 chr11 82226871 82226983 -68556570 + L1M4 LINE L1 4456 4570 -1576 584 302 7 7 chr11 82227015 82227164 -68556389 + MER5A DNA MER1_type 35 183 -6 907 216 11 6 chr11 82227178 82227354 -68556199 + MER5B DNA MER1_type 2 178 0 2194 85 0 60 chr11 82227451 82227767 -68555786 - AluSg SINE Alu -13 297 1 197 254 127 0 chr11 82227837 82227892 -68555661 + L2 LINE L2 3202 3263 -9 228 271 129 12 chr11 82227988 82228073 -68555480 - L2 LINE L2 -45 3227 3133 293 198 78 36 chr11 82231104 82231207 -68552346 + L2 LINE L2 3154 3305 -8 30 59 0 0 chr11 82231207 82231258 -68552295 + AT_rich Low_complexity Low_complexity 1 51 0 403 243 37 0 chr11 82231263 82231370 -68552183 - MIR SINE MIR -86 176 66 2056 107 18 0 chr11 82232034 82232315 -68551238 - AluSp SINE Alu -19 294 9 1033 104 0 14 chr11 82232322 82232466 -68551087 - FLAM_C SINE Alu -1 142 1 559 270 101 53 chr11 82232514 82233244 -68550309 - L1MEd LINE L1 -861 1629 765 304 339 113 43 chr11 82233285 82233727 -68549826 - L1MEd LINE L1 -5473 646 174 329 204 127 70 chr11 82233896 82234053 -68549500 - L1MEd LINE L1 -5935 184 19 451 250 7 7 chr11 82234056 82234192 -68549361 - L1M4 LINE L1 -1898 4248 4113 302 296 22 30 chr11 82234247 82234438 -68549115 + MIR SINE MIR 30 260 -2 244 203 0 0 chr11 82234520 82234567 -68548986 - MIR SINE MIR -87 121 74 999 204 64 18 chr11 82234956 82235176 -68548377 + MIR SINE MIR 33 262 0 245 321 79 14 chr11 82235348 82235488 -68548065 - L2 LINE L2 -17 3296 3148 601 190 101 6 chr11 82235553 82235603 -68547950 + MER63 DNA MER1_type 1 45 -885 183 42 0 0 chr11 82235603 82235627 -68547926 + (TA)n Simple_repeat Simple_repeat 1 24 0 601 190 101 6 chr11 82235627 82235734 -68547819 + MER63 DNA MER1_type 45 173 -757 333 210 16 0 chr11 82235836 82235898 -68547655 - MER63 DNA MER1_type -534 526 464 3041 202 31 20 chr11 82236282 82236936 -68546617 + MER63C DNA MER1_type 270 930 0 280 297 42 34 chr11 82236959 82237077 -68546476 - L2 LINE L2 -220 3052 2934 348 273 32 26 chr11 82237082 82237203 -68546350 + MER5A DNA MER1_type 18 134 -44 186 276 53 13 chr11 82237231 82237307 -68546246 + MER5A DNA MER1_type 7 85 -104 * 220 228 22 185 chr11 82237255 82237351 -68546202 - MER5A DNA MER1_type -22 167 114 8170 26 0 0 chr11 82237351 82238293 -68545260 - L1PA4 LINE L1 -1 6154 5212 220 228 22 185 chr11 82238293 82238380 -68545173 - MER5A DNA MER1_type -75 114 14 187 333 0 0 chr11 82238471 82238534 -68545019 + MIR SINE MIR 200 262 0 225 65 0 0 chr11 82238620 82238651 -68544902 + (TG)n Simple_repeat Simple_repeat 1 31 0 4887 124 16 3 chr11 82239541 82240252 -68543301 - L1PB4 LINE L1 -3 6153 5434 467 275 12 35 chr11 82240735 82240906 -68542647 - L1ME4a LINE L1 -266 5855 5689 814 158 6 6 chr11 82240909 82241074 -68542479 + CT-rich Low_complexity Low_complexity 3 167 0 323 312 41 59 chr11 82241127 82241297 -68542256 - MIR3 SINE MIR -27 181 15 2434 187 62 68 chr11 82241844 82242405 -68541148 - MER74A LTR ERVL 0 558 1 375 212 106 80 chr11 82242714 82242865 -68540688 + MER5A DNA MER1_type 35 189 0 188 317 79 49 chr11 82243482 82243646 -68539907 - MIR SINE MIR -63 199 31 2089 127 41 0 chr11 82244278 82244569 -68538984 + AluSx SINE Alu 1 303 -9 931 264 123 39 chr11 82244756 82245439 -68538114 + L2 LINE L2 2571 3309 -4 249 108 0 0 chr11 82245823 82245860 -68537693 + (A)n Simple_repeat Simple_repeat 1 37 0 538 331 6 17 chr11 82245882 82246060 -68537493 + MIR3 SINE MIR 30 205 -3 289 218 286 9 chr11 82246563 82246707 -68536846 + MIR SINE MIR 22 192 -70 224 224 0 41 chr11 82246708 82246757 -68536796 - MIR SINE MIR -87 121 75 497 259 106 12 chr11 82247421 82247591 -68535962 - MIR SINE MIR -56 206 21 425 207 11 11 chr11 82247846 82247933 -68535620 + MER5A DNA MER1_type 3 89 -100 724 163 28 0 chr11 82248472 82248613 -68534940 + L1M4 LINE L1 3543 3687 -2459 2147 137 3 0 chr11 82249459 82249765 -68533788 + AluSx SINE Alu 1 307 -5 585 297 41 0 chr11 82249786 82249981 -68533572 + MIR SINE MIR 49 251 -11 473 266 62 34 chr11 82251038 82251215 -68532338 + MIR SINE MIR 57 238 -24 539 280 89 12 chr11 82252048 82252216 -68531337 + MIR SINE MIR 81 261 -1 220 221 174 35 chr11 82252502 82252588 -68530965 + MIR3 SINE MIR 104 201 -7 277 307 270 19 chr11 82252599 82252869 -68530684 - L2 LINE L2 -4 3268 2931 426 307 74 34 chr11 82253178 82253354 -68530199 + MIR SINE MIR 5 187 -75 186 273 91 13 chr11 82254305 82254382 -68529171 + MIR SINE MIR 36 118 -90 853 51 0 0 chr11 82255029 82255127 -68528426 + AluSg/x SINE Alu 190 287 -22 245 338 108 38 chr11 82255145 82255385 -68528168 - L2 LINE L2 0 3272 3016 405 217 38 0 chr11 82255387 82255493 -68528060 - L1MB7 LINE L1 0 6184 6075 1054 187 112 4 chr11 82255512 82255780 -68527773 - L1ME1 LINE L1 -164 6002 5706 * 2648 194 13 173 chr11 82255765 82255798 -68527755 - L1ME1 LINE L1 -1280 4866 4829 485 210 68 110 chr11 82255798 82256017 -68527536 + MER63A DNA MER1_type 1 210 0 2648 194 13 173 chr11 82256017 82256438 -68527115 - L1ME1 LINE L1 -1317 4829 4342 907 199 0 29 chr11 82256438 82256609 -68526944 + FRAM SINE Alu 1 166 0 2648 194 13 173 chr11 82256609 82256794 -68526759 - L1ME1 LINE L1 -1804 4342 4129 2151 115 0 0 chr11 82256794 82257082 -68526471 - AluSx SINE Alu 0 312 25 2648 194 13 173 chr11 82257082 82257508 -68526045 - L1ME1 LINE L1 -2017 4129 3636 186 43 0 0 chr11 82257508 82257531 -68526022 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 764 197 0 0 chr11 82257531 82257653 -68525900 - AluSq/x SINE Alu -190 123 2 2648 194 13 173 chr11 82257653 82257698 -68525855 - L1ME1 LINE L1 -2509 3637 3586 2452 79 0 13 chr11 82257698 82258002 -68525551 - AluY SINE Alu -11 300 1 2648 194 13 173 chr11 82258002 82258346 -68525207 - L1ME1 LINE L1 -2560 3586 3189 1967 158 0 16 chr11 82258346 82258663 -68524890 - AluJb SINE Alu 0 312 1 2648 194 13 173 chr11 82258663 82258790 -68524763 - L1ME1 LINE L1 -2957 3189 3560 4653 89 93 1 chr11 82258790 82259477 -68524076 + L1PA13 LINE L1 5413 6162 -1 2648 194 13 173 chr11 82259477 82259595 -68523958 - L1ME1 LINE L1 -2585 3561 3426 249 235 37 0 chr11 82259684 82259765 -68523788 + (CA)n Simple_repeat Simple_repeat 2 85 0 2193 101 28 0 chr11 82260239 82260527 -68523026 - AluSq SINE Alu -17 296 1 285 302 10 0 chr11 82260529 82260625 -68522928 - L1ME1 LINE L1 -2710 3436 3340 2185 121 10 0 chr11 82261309 82261616 -68521937 - AluSx SINE Alu -2 310 1 308 329 86 0 chr11 82263258 82263398 -68520155 + L2 LINE L2 3160 3311 -2 286 251 182 48 chr11 82263469 82263656 -68519897 - MIR SINE MIR -31 231 20 650 215 5 32 chr11 82264063 82264238 -68519315 - MLT1F1 LTR MaLR 0 611 421 1485 181 24 3 chr11 82264257 82264544 -68519009 - MLT1F1 LTR MaLR -263 304 12 227 288 39 72 chr11 82265950 82266103 -68517450 - L2 LINE L2 -154 3118 2971 306 73 0 0 chr11 82266580 82266621 -68516932 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 263 267 99 38 chr11 82266738 82266869 -68516684 - L3 LINE CR1 -11 1566 1428 710 300 58 17 chr11 82266888 82267128 -68516425 + MIR SINE MIR 8 257 -5 205 191 0 0 chr11 82267200 82267242 -68516311 + T-rich Low_complexity Low_complexity 1 42 0 181 375 25 12 chr11 82267509 82267589 -68515964 - L2 LINE L2 -2816 498 418 287 309 64 0 chr11 82268383 82268477 -68515076 + L2 LINE L2 3214 3313 0 193 309 58 69 chr11 82268472 82268593 -68514960 - L2 LINE L2 -874 2440 2320 * 2917 122 7 19 chr11 82268593 82269026 -68514527 - MSTC LTR MaLR 0 428 1 193 309 58 69 chr11 82269026 82269092 -68514461 - L2 LINE L2 -994 2320 2255 421 279 120 32 chr11 82269217 82269375 -68514178 - MIR3 SINE MIR -21 187 16 194 111 89 89 chr11 82270149 82270194 -68513359 + L2 LINE L2 3226 3270 -2 * 248 242 162 5 chr11 82270177 82270314 -68513239 - MIR SINE MIR -63 145 33 561 219 19 0 chr11 82271640 82271745 -68511808 - MER81 DNA DNA 0 114 8 715 268 118 4 chr11 82272246 82272492 -68511061 - MLT1I LTR MaLR -26 383 110 221 238 48 32 chr11 82275057 82275120 -68508433 - L2 LINE L2 -2 3270 3207 406 282 0 0 chr11 82276779 82276864 -68506689 - L2 LINE L2 -1 3271 3187 296 262 36 0 chr11 82278566 82278650 -68504903 + MIR SINE MIR 105 191 -71 253 330 92 17 chr11 82278902 82279075 -68504478 - MIR SINE MIR -50 212 27 203 306 83 0 chr11 82279718 82279790 -68503763 + L2 LINE L2 2681 2758 -556 863 309 64 11 chr11 82279800 82280159 -68503394 + L2 LINE L2 2890 3267 -5 382 299 21 0 chr11 82280540 82280637 -68502916 + MIR SINE MIR 23 121 -141 453 285 101 22 chr11 82281712 82281891 -68501662 - MIR SINE MIR -55 207 15 391 289 34 34 chr11 82282577 82282726 -68500827 + MIR SINE MIR 59 207 -55 252 135 0 0 chr11 82282920 82282957 -68500596 + L2 LINE L2 3227 3263 -9 191 167 24 0 chr11 82282983 82283025 -68500528 + GA-rich Low_complexity Low_complexity 2 44 0 180 0 0 0 chr11 82283115 82283135 -68500418 + (TGGGGG)n Simple_repeat Simple_repeat 5 24 0 595 314 115 32 chr11 82283262 82283758 -68499795 + L3 LINE CR1 969 1505 -72 420 200 121 50 chr11 82283987 82284127 -68499426 + L2 LINE L2 3123 3272 0 237 340 143 27 chr11 82284181 82284328 -68499225 - L2 LINE L2 -5 3267 3104 202 294 73 0 chr11 82284712 82284780 -68498773 + MIR3 SINE MIR 88 160 -48 357 287 143 51 chr11 82284798 82285014 -68498539 - MIR SINE MIR -6 256 21 180 309 0 52 chr11 82285006 82285103 -68498450 + MIR SINE MIR 154 245 -17 * 800 297 64 48 chr11 82285574 82286430 -68497123 - L2 LINE L2 -1 3271 2421 284 305 70 59 chr11 82286470 82286742 -68496811 - L2 LINE L2 -30 3242 2968 357 292 11 0 chr11 82287001 82287090 -68496463 - MIR SINE MIR -108 154 65 315 280 47 0 chr11 82287208 82287315 -68496238 + MER91A DNA MER1_type 1 112 -84 201 150 0 50 chr11 82287599 82287659 -68495894 + (TTAAA)n Simple_repeat Simple_repeat 4 60 0 2076 131 0 0 chr11 82287879 82288162 -68495391 - AluSx SINE Alu -8 304 22 247 204 0 0 chr11 82289168 82289212 -68494341 - MIR SINE MIR 0 262 219 226 306 48 61 chr11 82289288 82289435 -68494118 + MIR SINE MIR 100 244 -18 262 187 132 55 chr11 82289812 82289903 -68493650 + MER97b DNA MER1_type? 2 99 -954 703 162 8 0 chr11 82289906 82290023 -68493530 + FLAM_A SINE Alu 20 137 -5 414 184 0 0 chr11 82290023 82290099 -68493454 + MER97a DNA MER1_type? 104 179 -715 2220 92 0 39 chr11 82292443 82292749 -68490804 + AluSx SINE Alu 1 294 -18 381 300 0 0 chr11 82292766 82292856 -68490697 - L1MC4 LINE L1 -1340 6702 6613 349 319 0 21 chr11 82292783 82292877 -68490676 + L1MC4 LINE L1 6614 6705 -1337 * 243 299 0 46 chr11 82292886 82292973 -68490580 - L2 LINE L2 0 3272 3190 246 32 0 0 chr11 82293740 82293771 -68489782 + (CA)n Simple_repeat Simple_repeat 2 32 0 2234 116 0 0 chr11 82293926 82294220 -68489333 + AluSx SINE Alu 1 294 -18 208 222 0 22 chr11 82295023 82295068 -68488485 + C-rich Low_complexity Low_complexity 4 47 0 273 291 85 7 chr11 82295894 82296035 -68487518 + L2 LINE L2 2430 2581 -733 586 187 103 0 chr11 82296566 82296673 -68486880 + FRAM SINE Alu 1 118 -58 582 144 10 0 chr11 82296746 82296843 -68486710 - L1M4 LINE L1 -610 5564 5467 291 298 26 89 chr11 82297004 82297306 -68486247 - L2 LINE L2 -1025 2289 2007 2143 108 7 0 chr11 82297414 82297709 -68485844 - AluSx SINE Alu -15 297 1 2315 85 0 3 chr11 82297769 82298074 -68485479 - AluSc SINE Alu -5 304 1 181 300 100 30 chr11 82298094 82298194 -68485359 - L2 LINE L2 -1397 1917 1811 3022 329 82 50 chr11 82298358 82299931 -68483622 - HERVL LTR ERVL -2330 3324 1651 1897 103 0 0 chr11 82299931 82300183 -68483370 + AluSx SINE Alu 1 252 -60 3022 329 82 50 chr11 82300183 82300939 -68482614 - HERVL LTR ERVL -4003 1651 921 581 266 46 50 chr11 82301060 82301301 -68482252 + MLT1H LTR MaLR 89 328 -221 270 243 140 37 chr11 82301281 82301388 -68482165 + MLT1H LTR MaLR 477 594 -1 * 252 0 0 0 chr11 82301511 82301539 -68482014 + (CGGGGG)n Simple_repeat Simple_repeat 3 30 0 2113 102 21 0 chr11 82301704 82301989 -68481564 + AluSc SINE Alu 1 291 -18 228 270 52 52 chr11 82302379 82302494 -68481059 - L2 LINE L2 -223 3049 2935 881 249 87 0 chr11 82302972 82303201 -68480352 - MIR SINE MIR -2 260 12 373 247 31 0 chr11 82303233 82303330 -68480223 - L2 LINE L2 -18 3254 3155 609 265 90 25 chr11 82303442 82303642 -68479911 + MIR SINE MIR 31 243 -19 191 272 161 12 chr11 82304123 82304204 -68479349 + MIR SINE MIR 108 200 -62 462 341 40 0 chr11 82304313 82304486 -68479067 + MIR SINE MIR 39 218 -44 220 267 33 0 chr11 82304549 82304609 -68478944 + L2 LINE L2 2992 3053 -219 775 320 83 8 chr11 82304609 82304996 -68478557 - L2 LINE L2 -36 3277 2862 223 260 67 80 chr11 82305225 82305375 -68478178 - MIR3 SINE MIR -56 152 5 705 160 8 8 chr11 82305681 82305800 -68477753 + FLAM_A SINE Alu 20 138 -4 337 302 85 0 chr11 82307201 82307330 -68476223 - MIR SINE MIR -23 239 100 553 266 41 12 chr11 82307354 82307523 -68476030 + MER5A DNA MER1_type 16 189 0 523 236 69 17 chr11 82307571 82307745 -68475808 + L1MC5 LINE L1 7743 7925 -36 255 103 0 0 chr11 82307751 82307790 -68475763 + (CA)n Simple_repeat Simple_repeat 2 40 0 337 250 213 0 chr11 82307937 82308101 -68475452 + L2 LINE L2 2987 3185 -87 244 307 13 13 chr11 82308735 82308810 -68474743 + MIR SINE MIR 48 122 -86 742 162 21 62 chr11 82308989 82309141 -68474412 + MIR SINE MIR 53 196 -66 2285 96 0 0 chr11 82309141 82309442 -68474111 + AluSx SINE Alu 1 301 -11 742 162 21 62 chr11 82309442 82309482 -68474071 + MIR SINE MIR 196 236 -26 1703 163 30 13 chr11 82310548 82310849 -68472704 - AluJb SINE Alu -6 306 1 256 205 241 0 chr11 82310946 82311029 -68472524 + MIR SINE MIR 45 147 -61 287 233 68 0 chr11 82311160 82311233 -68472320 + MIR SINE MIR 108 185 -77 2069 124 0 13 chr11 82311242 82311548 -68472005 + AluSx SINE Alu 1 302 -10 206 328 125 52 chr11 82312680 82312912 -68470641 + L2 LINE L2 3015 3263 -50 432 191 11 0 chr11 82314269 82314358 -68469195 + MER94 DNA DNA 2 91 -43 342 217 11 43 chr11 82317267 82317359 -68466194 + MIR SINE MIR 57 145 -117 254 192 77 0 chr11 82317551 82317603 -68465950 - L2 LINE L2 -48 3265 3210 429 316 74 21 chr11 82318189 82318379 -68465174 - L3 LINE CR1 -6 1571 1372 2145 114 0 0 chr11 82318476 82318774 -68464779 + AluSx SINE Alu 1 298 -14 183 296 142 28 chr11 82319218 82319394 -68464159 + L2 LINE L2 3056 3251 -21 480 224 56 28 chr11 82319794 82319937 -68463616 - MIR3 SINE MIR -43 165 19 365 277 113 7 chr11 82320095 82320236 -68463317 - MIR SINE MIR -56 206 51 185 360 50 25 chr11 82320290 82320451 -68463102 - MIR SINE MIR -11 251 87 278 266 51 0 chr11 82321344 82321423 -68462130 + MIR SINE MIR 34 116 -92 462 264 119 22 chr11 82321738 82321939 -68461614 + MIR3 SINE MIR 2 228 -34 347 179 292 36 chr11 82322008 82322176 -68461377 + L1MC4a LINE L1 5695 5905 -1903 300 287 21 35 chr11 82322200 82322343 -68461210 + L1ME4a LINE L1 5599 5739 -382 1624 149 52 3 chr11 82322597 82322886 -68460667 - AluJo SINE Alu -8 304 2 431 249 94 50 chr11 82322921 82323102 -68460451 + L1ME4a LINE L1 5933 6121 0 273 270 26 52 chr11 82324544 82324659 -68458894 + MIR SINE MIR 23 135 -73 323 270 58 0 chr11 82324784 82324912 -68458641 - MIR SINE MIR -21 241 104 189 203 78 78 chr11 82325933 82325997 -68457556 - L2 LINE L2 -179 3093 3030 910 172 6 6 chr11 82326031 82326208 -68457345 + MER96B DNA MER1_type? 2 178 -239 262 229 0 0 chr11 82326208 82326256 -68457297 + MER45A DNA AcHobo 1 48 -130 2424 70 0 10 chr11 82326304 82326618 -68456935 - AluY SINE Alu 0 311 1 820 107 16 0 chr11 82326620 82326741 -68456812 - AluJo SINE Alu -178 134 12 1027 60 113 13 chr11 82326757 82326908 -68456645 - AluSg/x SINE Alu -15 295 130 2049 90 0 4 chr11 82326935 82327202 -68456351 + AluSq SINE Alu 1 266 -47 992 129 129 52 chr11 82327252 82327397 -68456156 - MER96B DNA MER1_type? -167 250 79 2272 95 0 0 chr11 82327397 82327701 -68455852 + AluY SINE Alu 1 304 -7 992 129 129 52 chr11 82327701 82327787 -68455766 - MER96B DNA MER1_type? -338 79 1 2179 82 21 0 chr11 82328294 82328575 -68454978 - AluSg1 SINE Alu -21 288 2 1917 109 42 3 chr11 82328580 82328863 -68454690 - AluSx SINE Alu -18 294 1 605 311 167 6 chr11 82328863 82329110 -68454443 - L2 LINE L2 -6 3307 3101 2079 191 92 38 chr11 82329110 82329587 -68453966 - MLT1D LTR MaLR 0 505 3 605 311 167 6 chr11 82329587 82329705 -68453848 - L2 LINE L2 -212 3101 2883 277 265 43 117 chr11 82330326 82330488 -68453065 + L2 LINE L2 3164 3313 0 368 303 109 51 chr11 82330717 82331067 -68452486 + L2 LINE L2 2886 3255 -17 1042 180 27 0 chr11 82331198 82331381 -68452172 + MER5A DNA MER1_type 1 188 -1 514 212 73 17 chr11 82331454 82331633 -68451920 - MER53 DNA DNA 0 189 1 * 635 192 39 8 chr11 82331633 82331759 -68451794 + MER45A DNA AcHobo 48 177 -1 2083 117 10 0 chr11 82332079 82332386 -68451167 - AluSx SINE Alu -2 310 1 255 372 0 0 chr11 82332635 82332721 -68450832 - L2 LINE L2 -19 3253 3168 430 234 48 28 chr11 82332867 82333012 -68450541 + L1MC5 LINE L1 7762 7909 -52 1913 84 0 4 chr11 82333177 82333427 -68450126 - AluSq SINE Alu -63 250 2 747 172 0 8 chr11 82334361 82334495 -68449058 - FLAM_C SINE Alu 0 143 11 187 347 57 40 chr11 82334506 82334630 -68448923 + L2 LINE L2 3115 3240 -32 674 303 35 4 chr11 82334645 82334873 -68448680 - MIR SINE MIR 0 262 28 4216 135 46 74 chr11 82334975 82335783 -68447770 + LTR1 LTR ERV1 1 785 0 1551 183 3 27 chr11 82335954 82336255 -68447298 - AluJo SINE Alu -18 294 1 287 164 209 0 chr11 82336425 82336492 -68447061 + MER81 DNA DNA 1 81 -33 211 198 89 0 chr11 82336726 82336883 -68446670 + (CAGAG)n Simple_repeat Simple_repeat 1 171 0 290 269 19 28 chr11 82336891 82336999 -68446554 + MIR SINE MIR 18 124 -84 232 306 82 10 chr11 82337044 82337142 -68446411 + MIR SINE MIR 105 209 -53 1211 270 125 24 chr11 82337153 82337609 -68445944 - MLT1J LTR MaLR -9 502 1 1830 149 3 0 chr11 82337613 82337895 -68445658 + AluSx SINE Alu 30 312 0 2147 82 61 0 chr11 82337899 82338192 -68445361 + AluSx SINE Alu 1 311 -1 3479 247 158 34 chr11 82339146 82339650 -68443903 + L2 LINE L2 1244 1684 -1629 1773 148 7 33 chr11 82339650 82339954 -68443599 + AluJb SINE Alu 1 296 -16 3479 247 158 34 chr11 82339954 82341248 -68442305 + L2 LINE L2 1684 3312 -1 246 281 104 67 chr11 82341400 82341535 -68442018 - L2 LINE L2 -127 3145 3006 574 210 90 42 chr11 82341600 82341767 -68441786 + MIR3 SINE MIR 18 192 -16 338 309 6 74 chr11 82341772 82341934 -68441619 + LTR16B LTR ERVL 8 158 -306 960 149 0 0 chr11 82341973 82342164 -68441389 - AluSg/x SINE Alu 0 325 135 544 276 28 0 chr11 82342164 82342309 -68441244 + LTR16B LTR ERVL 196 344 -120 183 255 0 0 chr11 82342310 82342361 -68441192 - L2 LINE L2 -226 3046 2996 294 143 0 0 chr11 82342662 82342711 -68440842 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 1985 111 0 0 chr11 82342716 82342987 -68440566 - AluSx SINE Alu -41 271 1 188 121 155 0 chr11 82343070 82343128 -68440425 - L2 LINE L2 -904 2410 2344 573 86 20 5 chr11 82343154 82343243 -68440310 - pTR5 LTR ERV1 -224 490 316 277 324 47 14 chr11 82343371 82343519 -68440034 + L2 LINE L2 3116 3268 -4 297 51 0 0 chr11 82343942 82343981 -68439572 + (CA)n Simple_repeat Simple_repeat 1 39 0 1243 191 71 17 chr11 82343985 82344349 -68439204 + MER54B LTR ERVL 477 764 -29 5592 188 67 22 chr11 82344352 82345197 -68438356 + Charlie1a DNA MER1_type 45 851 -1910 2001 70 92 4 chr11 82345197 82345470 -68438083 - AluSg SINE Alu -13 297 1 5592 188 67 22 chr11 82345470 82345551 -68438002 + Charlie1a DNA MER1_type 851 927 -1834 1782 164 10 3 chr11 82345551 82345850 -68437703 + AluJo SINE Alu 1 301 -11 5592 188 67 22 chr11 82345850 82346269 -68437284 + Charlie1a DNA MER1_type 927 1451 -4 1615 135 109 4 chr11 82346693 82346960 -68436593 - AluSx SINE Alu -17 295 1 310 265 19 0 chr11 82348220 82348311 -68435242 - MIR SINE MIR -24 184 88 921 251 89 8 chr11 82348849 82349084 -68434469 - MIR SINE MIR -5 257 4 340 335 146 47 chr11 82349087 82349472 -68434081 + L2 LINE L2 2848 3270 -2 278 255 39 10 chr11 82349936 82350038 -68433515 - MER69 DNA AcHobo -22 2504 2400 189 294 59 15 chr11 82350615 82350683 -68432870 - L2 LINE L2 -177 3095 3025 544 167 0 0 chr11 82350727 82350817 -68432736 - L2 LINE L2 -2 3311 3222 364 227 57 0 chr11 82351417 82351505 -68432048 - MIR SINE MIR -91 171 79 426 156 119 37 chr11 82351545 82351654 -68431899 + MIR SINE MIR 75 192 -70 1908 156 3 0 chr11 82351821 82352129 -68431424 + AluJo SINE Alu 1 309 -3 195 42 0 0 chr11 82353407 82353431 -68430122 + (CCCCG)n Simple_repeat Simple_repeat 4 27 0 287 283 22 43 chr11 82353431 82353523 -68430030 - MIR SINE MIR -76 186 97 231 361 19 19 chr11 82353901 82354009 -68429544 - MIR3 SINE MIR -46 162 55 248 299 13 97 chr11 82354212 82354366 -68429187 - MIR3 SINE MIR -53 155 15 201 278 69 0 chr11 82354962 82355034 -68428519 - MIR SINE MIR -99 163 87 397 284 187 0 chr11 82355158 82355292 -68428261 + MIR SINE MIR 37 195 -67 332 335 60 50 chr11 82356101 82356301 -68427252 + MIR SINE MIR 56 257 -5 576 286 132 5 chr11 82356868 82357081 -68426472 - MIR SINE MIR 0 262 23 229 325 71 26 chr11 82357198 82357352 -68426201 + MIR3 SINE MIR 34 194 -14 265 298 191 7 chr11 82358030 82358171 -68425382 + MIR SINE MIR 89 255 -7 191 262 16 16 chr11 82358392 82358453 -68425100 + MIR3 SINE MIR 11 71 -137 837 220 28 0 chr11 82358730 82358907 -68424646 + MIR SINE MIR 80 261 -1 247 304 0 0 chr11 82358910 82358979 -68424574 + L2 LINE L2 3200 3268 -4 180 316 213 39 chr11 82359825 82359869 -68423684 - L3b LINE CR1 -11 1572 1502 556 178 185 7 chr11 82359869 82360004 -68423549 + MER5B DNA MER1_type 4 162 -16 188 300 44 11 chr11 82360012 82360102 -68423451 - L3 LINE CR1 -77 1500 1408 252 327 80 0 chr11 82360196 82360309 -68423244 + MIR SINE MIR 108 229 -33 2247 158 12 60 chr11 82360765 82360946 -68422607 - LTR32 LTR ERVL 0 471 283 2145 102 3 19 chr11 82360946 82361260 -68422293 - AluSp SINE Alu 0 313 5 2247 158 12 60 chr11 82361260 82361558 -68421995 - LTR32 LTR ERVL -188 283 15 487 340 67 10 chr11 82361558 82361767 -68421786 + MIR SINE MIR 35 255 -7 363 232 20 0 chr11 82362081 82362180 -68421373 - LTR33 LTR ERVL -106 415 315 357 322 117 0 chr11 82362233 82362404 -68421149 - LTR33 LTR ERVL -321 200 10 515 223 45 70 chr11 82363361 82363553 -68420000 + MIR SINE MIR 13 202 -60 284 292 53 70 chr11 82363574 82363745 -68419808 - L3b LINE CR1 -141 1442 1275 364 230 43 81 chr11 82364409 82364570 -68418983 - MIR3 SINE MIR -42 166 12 367 281 83 8 chr11 82364960 82365081 -68418472 + MIR SINE MIR 21 150 -112 243 347 0 0 chr11 82365188 82365271 -68418282 - MIR SINE MIR -63 145 75 229 264 14 28 chr11 82365391 82365463 -68418090 + L2 LINE L2 3198 3268 -4 1905 91 109 0 chr11 82365529 82365803 -68417750 - AluSq SINE Alu -9 304 1 396 0 0 0 chr11 82366111 82366155 -68417398 + (TG)n Simple_repeat Simple_repeat 2 45 0 186 143 0 0 chr11 82366304 82366339 -68417214 + (TCCA)n Simple_repeat Simple_repeat 2 36 0 363 286 102 26 chr11 82366466 82366641 -68416912 - MIR SINE MIR -55 207 20 348 286 122 27 chr11 82366913 82367060 -68416493 + MER103 DNA DNA 6 166 0 189 320 93 41 chr11 82367296 82367393 -68416160 - L2 LINE L2 0 3313 3212 2394 80 0 0 chr11 82368457 82368756 -68414797 + AluSx SINE Alu 1 299 -13 280 267 167 0 chr11 82368756 82368846 -68414707 + MIR SINE MIR 92 196 -66 350 373 49 11 chr11 82369898 82370083 -68413470 + MIR SINE MIR 47 238 -24 371 328 150 0 chr11 82370308 82370488 -68413065 + MIR SINE MIR 48 254 -8 410 261 45 9 chr11 82370961 82371072 -68412481 + MIR3 SINE MIR 52 166 -42 289 275 25 33 chr11 82371087 82371207 -68412346 + MIR SINE MIR 1 119 -143 275 270 20 70 chr11 82371645 82371745 -68411808 - L3 LINE CR1 -1 1576 1482 401 310 56 7 chr11 82372264 82372406 -68411147 - MIR SINE MIR -1 261 113 347 326 58 29 chr11 82372878 82373050 -68410503 - MIR3 SINE MIR -17 191 15 208 204 0 0 chr11 82373199 82373243 -68410310 + L2 LINE L2 3016 3059 -213 2284 93 13 0 chr11 82373290 82373591 -68409962 - AluSg SINE Alu -5 305 1 2352 157 50 18 chr11 82373602 82374042 -68409511 - L1MB2 LINE L1 -2 6169 5716 278 309 12 0 chr11 82374367 82374448 -68409105 - MIR SINE MIR -89 119 38 202 227 23 0 chr11 82374815 82374859 -68408694 - L2 LINE L2 -2 3270 3226 979 226 75 4 chr11 82374884 82375048 -68408505 + MIR SINE MIR 2 190 -72 804 291 97 48 chr11 82375048 82375116 -68408437 - MLT1G1 LTR MaLR 0 595 532 2241 93 3 3 chr11 82375116 82375417 -68408136 + AluSx SINE Alu 1 301 -11 804 291 97 48 chr11 82375417 82375915 -68407638 - MLT1G1 LTR MaLR -63 532 1 979 226 75 4 chr11 82375915 82375989 -68407564 + MIR SINE MIR 190 257 -5 204 390 11 0 chr11 82376106 82376201 -68407352 - L2 LINE L2 -262 3010 2915 191 319 11 32 chr11 82376403 82376497 -68407056 - L2 LINE L2 -781 2533 2442 218 303 156 35 chr11 82377338 82377652 -68405901 - L2 LINE L2 -46 3226 2875 210 322 0 98 chr11 82378665 82378808 -68404745 - L3 LINE CR1 -146 1431 1303 246 174 0 0 chr11 82379019 82379065 -68404488 + A-rich Low_complexity Low_complexity 1 46 0 278 317 77 0 chr11 82379206 82379310 -68404243 + MIR SINE MIR 53 164 -98 363 317 75 25 chr11 82379327 82379567 -68403986 - LTR16C LTR ERVL -18 473 222 404 185 43 11 chr11 82380366 82380458 -68403095 + MIR SINE MIR 45 139 -69 250 311 56 20 chr11 82380437 82380602 -68402951 - MIR SINE MIR -48 214 48 * 2099 143 0 6 chr11 82381353 82381667 -68401886 + AluJb SINE Alu 1 312 0 255 228 0 51 chr11 82381990 82382069 -68401484 - MIR3 SINE MIR -132 76 2 599 220 54 99 chr11 82382629 82382942 -68400611 - Zaphod DNA AcHobo 0 4031 3733 996 117 0 14 chr11 82382950 82383095 -68400458 - AluSg/x SINE Alu -11 301 159 32 26 0 0 chr11 82383098 82383137 -68400416 + AT_rich Low_complexity Low_complexity 1 39 0 1940 127 0 11 chr11 82383166 82383450 -68400103 - AluSg SINE Alu -29 281 1 1991 121 4 0 chr11 82383464 82383765 -68399788 - AluSx SINE Alu 0 302 1 391 142 98 44 chr11 82383765 82383911 -68399642 + Zaphod DNA AcHobo 935 3701 -330 1999 123 16 26 chr11 82383923 82384233 -68399320 + AluSx SINE Alu 1 307 -5 1945 212 131 41 chr11 82384235 82384872 -68398681 - Zaphod DNA AcHobo -3122 909 192 1069 126 16 60 chr11 82384872 82385054 -68398499 + FAM SINE Alu 1 174 -1 1945 212 131 41 chr11 82385054 82385171 -68398382 - Zaphod DNA AcHobo -3839 192 87 306 0 0 0 chr11 82385172 82385206 -68398347 + (TG)n Simple_repeat Simple_repeat 1 34 0 2045 124 10 0 chr11 82385411 82385701 -68397852 + AluSq SINE Alu 6 298 -15 202 322 133 0 chr11 82385751 82385841 -68397712 - MIR3 SINE MIR -40 168 67 236 278 132 28 chr11 82386393 82386537 -68397016 + MIR3 SINE MIR 3 161 -47 861 234 51 5 chr11 82386649 82386846 -68396707 - MIR SINE MIR -47 215 10 593 146 0 10 chr11 82386850 82386953 -68396600 + MER5A DNA MER1_type 4 105 -84 186 256 265 17 chr11 82386876 82386993 -68396560 - MER5B DNA MER1_type -19 159 14 * 193 294 87 0 chr11 82387953 82388045 -68395508 + L2 LINE L2 3156 3255 -17 453 280 76 0 chr11 82388412 82388530 -68395023 - MIR SINE MIR -92 170 44 1245 101 6 0 chr11 82388533 82388701 -68394852 + FRAM SINE Alu 1 169 -7 190 282 117 83 chr11 82389590 82389916 -68393637 - L2 LINE L2 -107 3165 2829 223 330 78 0 chr11 82390350 82390453 -68393100 + L3 LINE CR1 1462 1572 -5 333 202 4 0 chr11 82391142 82391208 -68392345 - MIR SINE MIR -84 124 56 227 309 72 14 chr11 82391500 82391639 -68391914 + L2 LINE L2 2899 3045 -227 288 200 111 11 chr11 82391694 82391784 -68391769 - L2 LINE L2 -217 3055 2957 333 225 9 81 chr11 82392289 82392400 -68391153 - MIR3 SINE MIR -7 201 99 374 264 12 15 chr11 82392762 82392872 -68390681 + MIR SINE MIR 11 118 -90 378 0 0 0 chr11 82392885 82392927 -68390626 + (TG)n Simple_repeat Simple_repeat 2 43 0 2808 186 47 13 chr11 82392929 82393483 -68390070 - L1MC2 LINE L1 -11 6333 5761 861 145 0 14 chr11 82393691 82393836 -68389717 - FLAM_C SINE Alu 0 143 1 318 273 58 8 chr11 82393909 82394030 -68389523 - LTR67 LTR ERVL -2 555 429 2156 86 0 4 chr11 82394253 82394533 -68389020 - AluSx SINE Alu -33 279 1 943 148 131 18 chr11 82394535 82394794 -68388759 - L1MB7 LINE L1 -123 6057 5770 330 260 20 30 chr11 82394794 82394894 -68388659 - MIR SINE MIR -62 146 48 200 320 85 51 chr11 82395561 82395920 -68387633 - L2 LINE L2 -114 3158 2550 184 315 36 36 chr11 82396013 82396124 -68387429 - L2 LINE L2 -1057 2257 2147 220 254 82 57 chr11 82396497 82396619 -68386934 - MIR SINE MIR -62 146 46 1605 171 26 0 chr11 82397400 82397705 -68385848 - MER58B DNA MER1_type -1 340 28 580 214 84 0 chr11 82397712 82397843 -68385710 + MIR SINE MIR 15 156 -106 386 82 33 0 chr11 82397850 82397911 -68385642 + L1M4 LINE L1 5542 5604 -580 725 229 92 0 chr11 82397911 82398064 -68385489 + AluJo SINE Alu 118 284 -28 2925 144 25 66 chr11 82398064 82398092 -68385461 + L1MB7 LINE L1 5601 5629 -555 1897 113 26 0 chr11 82398092 82398357 -68385196 - AluSx SINE Alu -12 300 29 2925 144 25 66 chr11 82398357 82398917 -68384636 + L1MB7 LINE L1 5629 6165 -19 218 229 148 0 chr11 82398937 82398998 -68384555 + MIR SINE MIR 158 227 -35 215 274 48 0 chr11 82399030 82399092 -68384461 + L2 LINE L2 3216 3280 -33 358 304 88 7 chr11 82399104 82399252 -68384301 + MIR SINE MIR 32 191 -71 448 321 8 17 chr11 82399506 82399712 -68383841 + MIR SINE MIR 60 261 -1 961 260 145 36 chr11 82399716 82399992 -68383561 - L2 LINE L2 -4 3309 3064 2079 113 14 0 chr11 82399992 82400285 -68383268 + AluSx SINE Alu 1 297 -15 961 260 145 36 chr11 82400285 82400574 -68382979 - L2 LINE L2 -249 3064 2700 261 289 74 0 chr11 82400888 82400984 -68382569 + MIR SINE MIR 59 160 -63 210 71 0 0 chr11 82401131 82401159 -68382394 + (CAGG)n Simple_repeat Simple_repeat 1 28 0 293 289 20 9 chr11 82401803 82401927 -68381626 - MIR SINE MIR -81 127 1 189 291 139 35 chr11 82402127 82402213 -68381340 + MIR SINE MIR 58 152 -56 200 288 17 0 chr11 82402843 82402902 -68380651 + CT-rich Low_complexity Low_complexity 2 61 0 358 308 62 20 chr11 82403305 82403451 -68380102 - MIR SINE MIR 0 262 111 182 365 71 0 chr11 82404142 82404227 -68379326 + L3b LINE CR1 1350 1440 -143 213 294 146 90 chr11 82405294 82405706 -68377847 + L2 LINE L2 2836 3270 -2 248 340 30 0 chr11 82406181 82406281 -68377272 + MIR SINE MIR 46 148 -114 190 276 76 48 chr11 82406320 82406425 -68377128 + L2 LINE L2 327 434 -2880 302 264 16 16 chr11 82407602 82407723 -68375830 + L1P LINE L1 4883 5003 -1143 21 36 0 0 chr11 82407727 82407755 -68375798 + AT_rich Low_complexity Low_complexity 1 28 0 372 371 114 15 chr11 82407914 82408186 -68375367 + L1 LINE L1 4996 5294 -852 277 298 39 0 chr11 82408566 82408670 -68374883 - L1M4 LINE L1 -1158 4988 4881 264 324 90 0 chr11 82408794 82408905 -68374648 + MIR SINE MIR 30 150 -112 321 273 8 73 chr11 82408931 82409080 -68374473 + MIR SINE MIR 20 161 -47 231 293 93 0 chr11 82409335 82409410 -68374143 + L3 LINE CR1 1192 1273 -304 285 313 32 55 chr11 82409460 82409642 -68373911 - MIR SINE MIR -57 205 24 204 235 132 0 chr11 82409672 82409740 -68373813 + L3 LINE CR1 1288 1364 -213 485 215 50 1 chr11 82409850 82409964 -68373589 - MIR SINE MIR -62 146 35 213 345 161 6 chr11 82410001 82410175 -68373378 + L3 LINE CR1 1370 1570 -7 246 274 74 0 chr11 82411007 82411102 -68372451 - L2 LINE L2 -25 3247 3146 * 370 275 109 12 chr11 82411096 82411268 -68372285 - MIR SINE MIR -3 259 64 628 313 39 11 chr11 82411607 82411786 -68371767 - MER91B DNA MER1_type -5 185 2 207 277 197 16 chr11 82413022 82413210 -68370343 - L2 LINE L2 -182 3090 2869 737 267 16 16 chr11 82414058 82414249 -68369304 - MIR SINE MIR -32 230 40 325 348 37 51 chr11 82414359 82414632 -68368921 - L2 LINE L2 -87 3185 2917 402 202 32 81 chr11 82415070 82415194 -68368359 + MIR SINE MIR 65 182 -80 292 291 46 71 chr11 82415290 82415451 -68368102 + MIR SINE MIR 16 174 -61 202 279 21 66 chr11 82415702 82415852 -68367701 + MIR SINE MIR 13 153 -55 321 235 94 0 chr11 82415942 82416027 -68367526 - L2 LINE L2 -185 3087 2995 275 245 43 21 chr11 82416559 82416653 -68366900 - MIR SINE MIR -94 114 19 320 291 110 8 chr11 82416687 82416814 -68366739 + MIR SINE MIR 92 231 -31 476 224 22 31 chr11 82417218 82417360 -68366193 - MIR3 SINE MIR -21 187 46 351 296 8 38 chr11 82417354 82417486 -68366067 - MIR SINE MIR -126 136 9 * 286 229 24 12 chr11 82417488 82417571 -68365982 + L3 LINE CR1 1426 1509 -68 1487 155 0 25 chr11 82417692 82417937 -68365616 + AluJb SINE Alu 1 239 -73 261 260 73 21 chr11 82417940 82418036 -68365517 + MIR SINE MIR 124 224 -38 423 228 99 0 chr11 82418036 82418137 -68365416 + AluJb SINE Alu 185 295 -17 229 300 29 0 chr11 82418318 82418388 -68365165 + MIR3 SINE MIR 94 165 -43 265 225 28 28 chr11 82418536 82418607 -68364946 + MIR SINE MIR 86 156 -106 2241 63 49 0 chr11 82418610 82418897 -68364656 - AluY SINE Alu -10 301 1 715 268 38 42 chr11 82418906 82418971 -68364582 + L1ME4a LINE L1 5552 5616 -505 854 167 0 0 chr11 82418971 82419103 -68364450 + FLAM_A SINE Alu 2 133 0 715 268 38 42 chr11 82419103 82419350 -68364203 + L1ME4a LINE L1 5616 5863 -258 1681 163 54 10 chr11 82419364 82419658 -68363895 + AluJb SINE Alu 1 307 -5 373 206 16 119 chr11 82419664 82419724 -68363829 - MIR SINE MIR -49 213 170 2197 78 3 0 chr11 82419724 82420046 -68363507 - AluY SINE Alu 0 323 1 373 206 16 119 chr11 82420046 82420110 -68363443 - MIR SINE MIR -92 170 101 314 209 47 0 chr11 82420112 82420198 -68363355 + HsTC2 DNA Tc2 3 92 -1806 236 260 0 104 chr11 82420216 82420312 -68363241 - MIR SINE MIR -169 93 8 308 388 53 26 chr11 82420313 82420465 -68363088 + L1ME4a LINE L1 5903 6058 -63 266 279 78 7 chr11 82420866 82421020 -68362533 + L1ME LINE L1 5629 5793 -328 841 267 5 0 chr11 82421807 82421994 -68361559 - MIR SINE MIR -19 243 56 235 386 47 30 chr11 82422802 82423038 -68360515 - L2 LINE L2 -853 2461 2222 379 297 45 0 chr11 82423545 82423656 -68359897 - L1MC4a LINE L1 -1615 6193 6078 444 321 76 36 chr11 82423665 82424306 -68359247 - L1MC4a LINE L1 -1831 5977 5254 633 368 59 38 chr11 82424323 82424798 -68358755 - L1MC4a LINE L1 -914 5232 4744 2236 82 3 7 chr11 82424798 82425103 -68358450 - AluY SINE Alu -7 304 1 633 368 59 38 chr11 82425103 82425132 -68358421 - L1MC4a LINE L1 -1402 4744 4717 231 337 0 0 chr11 82425579 82425665 -68357888 - MIR SINE MIR -81 127 42 201 150 0 50 chr11 82425818 82425858 -68357695 - L2 LINE L2 -18 3254 3217 264 234 85 53 chr11 82425867 82425961 -68357592 - MIR SINE MIR 0 262 166 513 310 102 9 chr11 82425985 82426211 -68357342 - MIR SINE MIR 0 262 16 219 247 13 26 chr11 82428317 82428394 -68355159 + CT-rich Low_complexity Low_complexity 3 78 0 217 270 90 11 chr11 82428618 82428707 -68354846 - MIR SINE MIR -81 127 32 182 372 40 34 chr11 82429570 82429718 -68353835 - L2 LINE L2 -439 2875 2727 499 344 62 5 chr11 82429933 82430155 -68353398 + MIR SINE MIR 4 237 -25 194 300 22 33 chr11 82430510 82430600 -68352953 + MIR SINE MIR 35 123 -85 933 259 36 75 chr11 82430816 82431256 -68352297 - L1MC5 LINE L1 -46 7915 7499 2242 95 3 3 chr11 82431256 82431550 -68352003 + AluSp SINE Alu 1 294 -19 933 259 36 75 chr11 82431550 82431657 -68351896 - L1MC5 LINE L1 -462 7499 7389 298 246 200 9 chr11 82432507 82432617 -68350936 - MIR SINE MIR -15 247 117 271 215 89 13 chr11 82433043 82433122 -68350431 - MIR SINE MIR -72 136 52 957 169 13 0 chr11 82433124 82433278 -68350275 + FRAM SINE Alu 1 155 -21 262 288 180 18 chr11 82433316 82433427 -68350126 - MIR SINE MIR -13 249 121 194 176 0 0 chr11 82433597 82433631 -68349922 + L2 LINE L2 3206 3239 -33 444 262 145 65 chr11 82433648 82433862 -68349691 - MIR SINE MIR -4 258 28 625 236 30 94 chr11 82434475 82434678 -68348875 + MER91B DNA MER1_type 1 190 0 466 242 81 0 chr11 82434764 82434888 -68348665 + MIR SINE MIR 51 184 -78 267 244 0 89 chr11 82434950 82435040 -68348513 - MIR3 SINE MIR -23 185 104 236 312 81 23 chr11 82436104 82436232 -68347321 + MIR SINE MIR 41 181 -62 207 295 84 21 chr11 82436520 82436615 -68346938 - MIR SINE MIR -45 217 117 234 0 0 0 chr11 82436869 82436895 -68346658 + (CA)n Simple_repeat Simple_repeat 2 27 0 1532 152 70 40 chr11 82437582 82437884 -68345669 + AluJb SINE Alu 1 311 -1 304 295 8 16 chr11 82439485 82439607 -68343946 + CT-rich Low_complexity Low_complexity 2 122 0 283 311 50 17 chr11 82440162 82440281 -68343272 - L2 LINE L2 0 3272 3150 215 245 0 20 chr11 82440330 82440379 -68343174 + (TCTG)n Simple_repeat Simple_repeat 3 50 0 212 289 0 0 chr11 82441189 82441241 -68342312 + MIR SINE MIR 21 72 -136 456 337 107 47 chr11 82442195 82442625 -68340928 - L2 LINE L2 -5 3267 2812 334 291 55 0 chr11 82443972 82444082 -68339471 - MIR SINE MIR -114 148 33 183 80 0 0 chr11 82445190 82445215 -68338338 + (TCCCC)n Simple_repeat Simple_repeat 2 26 0 277 356 96 0 chr11 82445783 82445929 -68337624 - L3 LINE CR1 -115 1462 1303 270 217 33 0 chr11 82446277 82446337 -68337216 + L3 LINE CR1 1407 1468 -109 462 250 104 42 chr11 82446605 82446817 -68336736 - MIR SINE MIR -10 252 28 271 288 235 49 chr11 82446881 82447124 -68336429 + L2 LINE L2 2977 3264 -8 549 294 66 11 chr11 82447281 82447553 -68336000 + LTR33 LTR ERVL 216 502 -19 559 141 11 11 chr11 82447947 82448039 -68335514 - AluS SINE Alu -221 92 1 617 266 92 5 chr11 82449227 82449445 -68334108 + LTR16A1 LTR ERVL 221 457 0 189 74 0 0 chr11 82449764 82449791 -68333762 + (GA)n Simple_repeat Simple_repeat 2 28 0 260 327 87 29 chr11 82449927 82450031 -68333522 + MIR SINE MIR 17 126 -82 592 253 25 6 chr11 82450236 82450398 -68333155 + MIR SINE MIR 98 262 0 981 158 43 5 chr11 82450887 82451071 -68332482 - L1MB3 LINE L1 0 6183 5993 203 233 194 19 chr11 82451278 82451381 -68332172 - L2 LINE L2 -4 3268 3148 232 176 59 0 chr11 82451528 82451579 -68331974 + L1MCc LINE L1 1013 1066 -5357 * 2752 145 20 43 chr11 82451565 82451834 -68331719 + L1M4 LINE L1 5126 5400 -784 1534 182 7 29 chr11 82451834 82452142 -68331411 + AluJb SINE Alu 1 301 -11 2752 145 20 43 chr11 82452142 82452359 -68331194 + L1M4 LINE L1 5400 5596 -588 2425 64 0 10 chr11 82452359 82452673 -68330880 + AluY SINE Alu 1 311 0 2752 145 20 43 chr11 82452673 82452850 -68330703 + L1M4 LINE L1 5596 5776 -408 245 105 0 0 chr11 82452854 82452892 -68330661 + MADE1 DNA Mariner 1 38 -42 282 167 0 0 chr11 82452894 82452942 -68330611 + L1M4 LINE L1 5785 5832 -352 674 48 0 0 chr11 82452942 82453025 -68330528 + AluSc SINE Alu 2 84 -225 27512 93 40 5 chr11 82453025 82456926 -68326627 + L1P LINE L1 4 4042 -2104 5876 50 23 19 chr11 82507239 82507971 -68275582 - SVA Other Other -2 1384 650 1116 199 0 5 chr11 82508072 82508278 -68275275 + AluSg/x SINE Alu 108 312 0 23 0 0 0 chr11 82508285 82508308 -68275245 + AT_rich Low_complexity Low_complexity 1 23 0 326 316 40 13 chr11 82508398 82508550 -68275003 + MIR SINE MIR 2 157 -105 186 156 0 0 chr11 82509699 82509731 -68273822 + MIR SINE MIR 228 259 -3 652 103 0 0 chr11 82510112 82510209 -68273344 + AluSp/q SINE Alu 210 306 -7 237 119 0 0 chr11 82510214 82510256 -68273297 + (TA)n Simple_repeat Simple_repeat 2 43 0 2120 106 51 0 chr11 82510280 82510572 -68272981 - AluSq SINE Alu -6 307 1 272 294 51 42 chr11 82510941 82511435 -68272118 + L1ME LINE L1 4398 4895 -1251 35 71 0 0 chr11 82511529 82511599 -68271954 + AT_rich Low_complexity Low_complexity 1 70 0 269 237 30 111 chr11 82511764 82512026 -68271527 + L1ME LINE L1 5263 5503 -2282 282 257 35 120 chr11 82512064 82512348 -68271205 + L1ME LINE L1 5560 5819 -302 29 28 0 0 chr11 82512412 82512448 -68271105 + AT_rich Low_complexity Low_complexity 1 36 0 194 215 0 15 chr11 82512760 82512825 -68270728 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 2364 97 0 6 chr11 82512913 82513224 -68270329 + AluSc SINE Alu 1 309 0 23 0 0 0 chr11 82513231 82513254 -68270299 + AT_rich Low_complexity Low_complexity 1 23 0 1364 64 0 70 chr11 82513410 82513597 -68269956 - AluY SINE Alu -137 174 1 186 204 102 0 chr11 82513598 82513647 -68269906 - L2 LINE L2 -602 2712 2659 590 244 52 0 chr11 82513660 82513795 -68269758 + MIR SINE MIR 15 156 -106 352 336 62 49 chr11 82513895 82514282 -68269271 - L2 LINE L2 -832 2482 2091 1973 211 64 81 chr11 82514414 82515117 -68268436 + LTR8 LTR ERV1 1 691 0 631 298 32 44 chr11 82515264 82515516 -68268037 - MIR SINE MIR -6 256 8 2221 135 0 0 chr11 82516415 82516719 -68266834 - AluSx SINE Alu -7 305 2 5697 62 19 80 chr11 82516947 82517871 -68265682 - SVA Other Other -518 868 1 279 324 98 39 chr11 82518027 82518360 -68265193 + L2 LINE L2 2695 3050 -222 2280 90 3 10 chr11 82519491 82519790 -68263763 - AluSp SINE Alu -16 297 1 1180 106 0 136 chr11 82519864 82520100 -68263453 - AluJo SINE Alu 0 312 109 1389 137 37 79 chr11 82520103 82520453 -68263100 - MER4A LTR ERV1 -10 654 261 399 148 114 0 chr11 82520453 82520541 -68263012 - MER4A LTR ERV1 -566 98 1 647 182 0 0 chr11 82520543 82520653 -68262900 - AluJo SINE Alu -202 110 1 277 222 49 12 chr11 82520654 82520735 -68262818 - MER117 DNA MER1_type -109 88 5 479 322 81 11 chr11 82520756 82520930 -68262623 - MIR SINE MIR -75 187 2 2080 134 3 10 chr11 82521165 82521464 -68262089 + AluSx SINE Alu 1 297 -15 1060 109 33 22 chr11 82521540 82521724 -68261829 - L1MA8 LINE L1 -197 6094 5909 21 57 0 0 chr11 82521812 82521847 -68261706 + AT_rich Low_complexity Low_complexity 1 35 0 279 79 0 0 chr11 82522306 82522344 -68261209 + (A)n Simple_repeat Simple_repeat 1 38 0 438 198 9 26 chr11 82522716 82522832 -68260721 - L1MB8 LINE L1 0 6178 6065 3059 169 147 28 chr11 82522833 82523149 -68260404 - L1MB8 LINE L1 -455 5711 5434 366 23 0 0 chr11 82523149 82523192 -68260361 + (TC)n Simple_repeat Simple_repeat 2 44 0 3059 169 147 28 chr11 82523192 82524186 -68259367 - L1MB8 LINE L1 -732 5434 4243 243 290 65 11 chr11 82524368 82524461 -68259092 - MIR SINE MIR -76 132 61 459 229 14 21 chr11 82525273 82525413 -68258140 - L1ME4a LINE L1 -34 6087 5949 2130 71 0 51 chr11 82525903 82526073 -68257480 - AluSx SINE Alu -13 299 122 2199 104 3 0 chr11 82526073 82526380 -68257173 - AluSx SINE Alu -3 309 2 2515 54 0 0 chr11 82526385 82526683 -68256870 - AluY SINE Alu -13 298 1 2130 71 0 51 chr11 82526683 82526800 -68256753 - AluSx SINE Alu -194 118 21 1685 175 0 32 chr11 82527071 82527380 -68256173 - AluJo SINE Alu -13 299 1 407 340 91 9 chr11 82528283 82528515 -68255038 - MIR SINE MIR -11 251 1 1936 284 93 57 chr11 82528604 82529857 -68253696 - L2 LINE L2 -1 3271 1985 267 31 0 0 chr11 82529857 82529889 -68253664 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1936 284 93 57 chr11 82529889 82529988 -68253565 - L2 LINE L2 -1287 1985 1891 288 316 75 23 chr11 82530114 82530247 -68253306 + L2 LINE L2 3132 3271 -1 322 244 56 0 chr11 82530391 82530481 -68253072 - MIR SINE MIR -2 260 166 1300 174 28 42 chr11 82530576 82530864 -68252689 + AluJo SINE Alu 21 304 -8 649 223 181 5 chr11 82531352 82531540 -68252013 - MIR SINE MIR 0 262 42 2058 109 7 0 chr11 82531834 82532118 -68251435 + AluSg SINE Alu 1 286 -24 247 264 121 50 chr11 82532421 82532561 -68250992 + HAL1 LINE L1 1405 1554 -953 987 164 89 65 chr11 82532614 82532828 -68250725 + AluJo SINE Alu 76 294 -18 472 267 25 0 chr11 82533163 82533283 -68250270 + MER5C DNA MER1_type 1 123 -201 371 204 41 41 chr11 82533294 82533392 -68250161 + MER5C DNA MER1_type 227 324 0 256 154 0 0 chr11 82533566 82533605 -68249948 + FLAM_C SINE Alu 1 39 -94 483 167 12 0 chr11 82533605 82533689 -68249864 - AluS SINE Alu -225 87 3 838 102 0 8 chr11 82533693 82533811 -68249742 + FLAM_C SINE Alu 24 140 -3 843 144 0 0 chr11 82534647 82534765 -68248788 - FLAM_C SINE Alu -15 118 1 195 313 31 16 chr11 82534885 82534949 -68248604 - L2 LINE L2 -22 3291 3227 438 310 8 31 chr11 82535547 82535676 -68247877 + L2 LINE L2 3146 3271 -1 248 274 32 0 chr11 82536278 82536340 -68247213 + MIR SINE MIR 82 145 -63 326 330 48 0 chr11 82536364 82536467 -68247086 - MIR3 SINE MIR -27 181 74 2190 114 3 0 chr11 82536504 82536802 -68246751 - AluSx SINE Alu -3 309 11 2261 71 7 7 chr11 82536860 82537157 -68246396 - AluSg1 SINE Alu -12 297 1 290 278 35 35 chr11 82537175 82537290 -68246263 - MIR SINE MIR -51 211 97 188 353 35 0 chr11 82537515 82537600 -68245953 - MIR SINE MIR -102 106 19 223 328 104 0 chr11 82537718 82537837 -68245716 - MIR SINE MIR -64 144 60 27 0 0 0 chr11 82538289 82538316 -68245237 + AT_rich Low_complexity Low_complexity 1 27 0 515 282 103 51 chr11 82538373 82538607 -68244946 - MIR SINE MIR -12 250 5 30 0 0 0 chr11 82539783 82539813 -68243740 + AT_rich Low_complexity Low_complexity 1 30 0 308 332 117 9 chr11 82540389 82540612 -68242941 + L2 LINE L2 2231 2477 -837 548 290 104 22 chr11 82540939 82541122 -68242431 + L2 LINE L2 3075 3272 0 1602 107 16 20 chr11 82541195 82541447 -68242106 - MER1B DNA MER1_type 0 339 129 335 373 90 29 chr11 82541513 82541926 -68241627 + L2 LINE L2 2301 2738 -576 246 156 0 0 chr11 82542053 82542098 -68241455 + CT-rich Low_complexity Low_complexity 2 46 0 279 328 100 76 chr11 82542129 82542419 -68241134 + L2 LINE L2 2566 2862 -452 675 212 100 0 chr11 82542995 82543165 -68240388 + MER58C DNA MER1_type 28 214 -1 203 286 0 20 chr11 82543568 82543607 -68239946 - L3 LINE CR1 -10 1567 1530 562 184 285 0 chr11 82543607 82543765 -68239788 + MIR SINE MIR 3 205 -57 331 287 98 33 chr11 82543889 82544011 -68239542 - MIR SINE MIR -63 145 16 3161 176 16 35 chr11 82544265 82544953 -68238600 - L1MB5 LINE L1 0 6410 5736 2796 231 28 70 chr11 82544962 82545328 -68238225 - L1MB5 LINE L1 -765 5617 5237 2138 113 0 3 chr11 82545328 82545636 -68237917 - AluSx SINE Alu 0 307 1 2796 231 28 70 chr11 82545636 82546511 -68237042 - L1MB5 LINE L1 -1145 5237 4327 1625 157 7 52 chr11 82546511 82546798 -68236755 - AluJo SINE Alu -19 293 20 2796 231 28 70 chr11 82546798 82546885 -68236668 - L1MB5 LINE L1 -2055 4327 4238 2824 154 33 22 chr11 82546885 82547464 -68236089 - L1MB3 LINE L1 -1 6182 5598 2796 231 28 70 chr11 82547464 82548053 -68235500 - L1MB5 LINE L1 -2144 4238 3462 861 142 0 8 chr11 82548054 82548181 -68235372 + FLAM_C SINE Alu 1 126 -17 1776 186 0 7 chr11 82548188 82548483 -68235070 + AluJb SINE Alu 1 293 -19 416 247 31 19 chr11 82548519 82548681 -68234872 - L1MB5 LINE L1 -4234 2150 1987 1075 242 76 40 chr11 82548683 82549211 -68234342 - L1M4 LINE L1 -2295 3851 3305 527 299 103 26 chr11 82549233 82549467 -68234086 - MIR SINE MIR -1 261 10 339 138 31 0 chr11 82549529 82549585 -68233968 - AluJ/FRAM SINE Alu -4 298 241 952 138 0 0 chr11 82549585 82549730 -68233823 - LTR8 LTR ERV1 0 691 547 211 324 27 27 chr11 82552129 82552240 -68231313 + MIR3 SINE MIR 93 203 -5 217 253 46 58 chr11 82552599 82552686 -68230867 - MIR SINE MIR -61 147 62 363 234 64 0 chr11 82553491 82553585 -68229968 + MIR SINE MIR 126 225 -37 328 314 81 22 chr11 82553656 82553879 -68229674 - L1 LINE L1 -2579 3567 3332 354 303 34 17 chr11 82554082 82554201 -68229352 + L2 LINE L2 3193 3313 0 31 0 0 0 chr11 82554343 82554374 -68229179 + AT_rich Low_complexity Low_complexity 1 31 0 2397 74 0 10 chr11 82554425 82554734 -68228819 - AluY SINE Alu -5 306 1 942 295 62 47 chr11 82556515 82556902 -68226651 + L3 LINE CR1 869 1261 -316 387 255 130 18 chr11 82556949 82557114 -68226439 - MIR SINE MIR -11 251 66 2141 111 3 7 chr11 82557117 82557415 -68226138 - AluSg SINE Alu -13 297 1 894 297 211 11 chr11 82557486 82557998 -68225555 - L2 LINE L2 -17 3296 2687 1077 155 0 6 chr11 82557998 82558166 -68225387 + FRAM SINE Alu 1 163 -13 646 228 88 76 chr11 82558381 82558528 -68225025 - L2 LINE L2 -1186 2128 1984 821 146 0 8 chr11 82558528 82558658 -68224895 + FLAM_C SINE Alu 1 129 -4 646 228 88 76 chr11 82558658 82558704 -68224849 - L2 LINE L2 -1330 1984 1940 2506 64 6 10 chr11 82558704 82559016 -68224537 + AluY SINE Alu 1 311 0 646 228 88 76 chr11 82559016 82559084 -68224469 - L2 LINE L2 -1374 1940 1863 189 336 77 28 chr11 82559684 82559827 -68223726 + L2 LINE L2 3141 3290 -23 335 303 151 20 chr11 82560101 82560253 -68223300 - MIR SINE MIR -9 253 82 540 0 0 0 chr11 82560976 82561036 -68222517 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 276 306 95 91 chr11 82561260 82561502 -68222051 - L2 LINE L2 -5 3267 3025 411 207 30 52 chr11 82561789 82561924 -68221629 - HAL1b LINE L1 -470 878 747 6784 125 20 17 chr11 82562263 82562314 -68221239 + L1MA3 LINE L1 4174 4223 -2082 2163 100 0 4 chr11 82562314 82562632 -68220921 - AluSc SINE Alu 0 317 1 6784 125 20 17 chr11 82562632 82564705 -68218848 + L1MA3 LINE L1 4223 6305 0 557 159 23 0 chr11 82564981 82565069 -68218484 + 5S rRNA rRNA 1 90 -31 234 106 43 21 chr11 82565496 82565543 -68218010 + LTR13 LTR ERVK 665 712 -295 228 234 0 31 chr11 82565696 82565760 -68217793 - L1MC4 LINE L1 0 8042 7981 3606 239 82 11 chr11 82565766 82566792 -68216761 - L1MC4 LINE L1 -152 7890 6792 1146 191 81 0 chr11 82566827 82567062 -68216491 - AluJo SINE Alu -17 295 42 3713 246 61 87 chr11 82567088 82567135 -68216418 - L1MEc LINE L1 -4531 1865 1818 1724 105 117 0 chr11 82567135 82567383 -68216170 + AluSg1 SINE Alu 1 277 -32 3713 246 61 87 chr11 82567383 82569210 -68214343 - L1MEc LINE L1 -4578 1818 39 216 228 0 0 chr11 82569585 82569642 -68213911 + (CA)n Simple_repeat Simple_repeat 1 57 0 447 311 83 21 chr11 82570183 82570376 -68213177 + MIR3 SINE MIR 3 207 -1 417 329 77 13 chr11 82570452 82570686 -68212867 + MARNA DNA Mariner 223 471 -115 425 287 211 5 chr11 82570719 82570928 -68212625 - MIR SINE MIR -8 254 3 242 273 34 34 chr11 82571137 82571225 -68212328 - Charlie3 DNA MER1_type -1106 1604 1517 1056 145 73 64 chr11 82571460 82571694 -68211859 - MER46A DNA MER2_type 0 236 1 21 57 0 0 chr11 82572663 82572698 -68210855 + AT_rich Low_complexity Low_complexity 1 35 0 1149 128 0 0 chr11 82572972 82573128 -68210425 + FRAM SINE Alu 11 166 -10 390 151 96 0 chr11 82573128 82573201 -68210352 - MSTC LTR MaLR -348 80 1 256 258 33 73 chr11 82573252 82573403 -68210150 - L1M4 LINE L1 -2660 3486 3342 258 389 22 26 chr11 82574091 82574317 -68209236 + L2 LINE L2 2826 3050 -222 413 335 179 0 chr11 82574384 82574563 -68208990 + L3 LINE CR1 436 646 -931 345 346 39 0 chr11 82574589 82574693 -68208860 - L2 LINE L2 -14 3258 3151 346 324 80 78 chr11 82574698 82575072 -68208481 + L3 LINE CR1 660 1034 -543 679 307 72 71 chr11 82575660 82576187 -68207366 + L2 LINE L2 2741 3268 -4 2099 196 73 80 chr11 82576462 82576887 -68206666 - MLT1E3 LTR MaLR 0 624 203 1227 183 98 64 chr11 82576887 82577264 -68206289 - MLT1B LTR MaLR 0 390 1 2099 196 73 80 chr11 82577264 82577466 -68206087 - MLT1E3 LTR MaLR -421 203 1 560 244 249 10 chr11 82577754 82577947 -68205606 + MIR SINE MIR 13 251 -11 268 253 51 13 chr11 82577949 82578028 -68205525 - L2 LINE L2 0 3272 3191 233 291 38 0 chr11 82579046 82579125 -68204428 - L2 LINE L2 -615 2699 2618 874 311 94 19 chr11 82579232 82579711 -68203842 + L2 LINE L2 1968 2482 -832 367 278 0 0 chr11 82579740 82579830 -68203723 - L1MC4 LINE L1 -1339 6703 6614 228 272 68 19 chr11 82579837 82579850 -68203703 - L1MA10 LINE L1 -47 6287 6275 3041 220 26 36 chr11 82579850 82580320 -68203233 - L1ME2 LINE L1 -55 6109 5636 1441 189 32 11 chr11 82580320 82580601 -68202952 - AluJo SINE Alu -25 287 1 3041 220 26 36 chr11 82580601 82581011 -68202542 - L1ME2 LINE L1 -528 5636 5238 369 0 0 0 chr11 82581011 82581052 -68202501 + (CA)n Simple_repeat Simple_repeat 2 42 0 3041 220 26 36 chr11 82581052 82581115 -68202438 - L1ME2 LINE L1 -926 5238 5176 3954 236 117 53 chr11 82581121 82581373 -68202180 - L1ME2 LINE L1 -1057 5089 4855 276 30 0 0 chr11 82581373 82581406 -68202147 + (TG)n Simple_repeat Simple_repeat 2 34 0 2167 107 4 0 chr11 82581414 82581727 -68201826 - AluSp SINE Alu 0 314 1 3954 236 117 53 chr11 82581727 82583171 -68200382 - L1ME2 LINE L1 -1297 4849 3273 420 425 20 12 chr11 82583219 82583464 -68200089 + L2 LINE L2 2558 2804 -510 393 370 32 36 chr11 82584889 82585167 -68198386 - L2 LINE L2 -187 3085 2809 3496 213 85 25 chr11 82585562 82585663 -68197890 - L1ME2 LINE L1 -1 6163 6070 1577 174 43 4 chr11 82585663 82585944 -68197609 + AluJo SINE Alu 1 292 -20 3496 213 85 25 chr11 82585944 82586400 -68197153 - L1ME2 LINE L1 -94 6070 5643 338 119 0 228 chr11 82586400 82586434 -68197119 - MADE1 DNA Mariner 0 80 81 1809 90 4 4 chr11 82586434 82586668 -68196885 - AluSc SINE Alu -14 295 62 338 119 0 228 chr11 82586668 82586734 -68196819 - MADE1 DNA Mariner 2 82 3 3496 213 85 25 chr11 82586734 82587884 -68195669 - L1ME2 LINE L1 -521 5643 4333 15839 113 13 22 chr11 82587884 82590325 -68193228 - Tigger1 DNA MER2_type 0 2418 2 3496 213 85 25 chr11 82590325 82590477 -68193076 - L1ME2 LINE L1 -1831 4333 4192 2044 141 0 0 chr11 82590530 82590821 -68192732 + AluJb SINE Alu 1 291 -21 342 259 19 19 chr11 82591129 82591237 -68192316 + MIR3 SINE MIR 77 184 -24 196 300 0 0 chr11 82593053 82593103 -68190450 - MIR3 SINE MIR -7 201 152 * 641 250 111 52 chr11 82593100 82593352 -68190201 + L2 LINE L2 3047 3313 0 186 392 0 0 chr11 82593350 82593424 -68190129 - MIR3 SINE MIR -48 160 87 * 654 235 0 0 chr11 82593872 82594004 -68189549 - FLAM_A SINE Alu 0 133 2 1630 235 78 10 chr11 82594016 82594530 -68189023 - L1ME2 LINE L1 -2214 3932 3384 310 233 143 0 chr11 82594532 82594665 -68188888 - L1ME LINE L1 -675 5421 5270 1105 95 0 7 chr11 82594666 82594813 -68188740 + AluSg SINE Alu 1 146 -164 3014 226 93 67 chr11 82594818 82595350 -68188203 - L1ME LINE L1 -1156 4924 4408 2283 62 0 14 chr11 82595350 82595659 -68187894 - AluY SINE Alu 0 306 2 3014 226 93 67 chr11 82595659 82596476 -68187077 - L1ME LINE L1 -1672 4408 3537 1393 269 35 22 chr11 82596497 82597006 -68186547 - L1ME LINE L1 -5217 853 338 499 270 61 16 chr11 82597026 82597236 -68186317 - L1ME LINE L1 -5775 295 58 21 0 0 0 chr11 82597312 82597333 -68186220 + AT_rich Low_complexity Low_complexity 1 21 0 275 188 0 0 chr11 82597610 82597658 -68185895 - Charlie1b DNA MER1_type -3 520 473 1025 237 36 43 chr11 82597670 82597999 -68185554 - Charlie1b DNA MER1_type -191 332 6 878 179 7 0 chr11 82598059 82598204 -68185349 - MER46A DNA MER2_type -89 147 2 183 291 94 68 chr11 82598396 82598513 -68185040 + L3 LINE CR1 222 341 -1236 2252 169 39 9 chr11 82599029 82599468 -68184085 - L1MB3 LINE L1 -9 6174 5723 5391 139 55 14 chr11 82600435 82600496 -68183057 - L1MC2 LINE L1 -3 6341 6284 2480 73 0 3 chr11 82600496 82600798 -68182755 + AluY SINE Alu 1 301 -10 5391 139 55 14 chr11 82600798 82601732 -68181821 - L1MC2 LINE L1 -60 6284 5311 2038 135 0 16 chr11 82601732 82602036 -68181517 - AluSx SINE Alu -13 299 1 5391 139 55 14 chr11 82602036 82602076 -68181477 - L1MC2 LINE L1 -1033 5311 5274 230 169 0 85 chr11 82602076 82602135 -68181418 + FLAM_A SINE Alu 64 117 -16 1882 209 42 73 chr11 82602145 82602820 -68180733 - L1MC2 LINE L1 -860 5286 4633 2398 217 29 43 chr11 82602853 82603601 -68179952 - L1MDa LINE L1 -1776 4764 3971 41010 62 6 7 chr11 82603603 82604394 -68179159 - L1PA6 LINE L1 0 6154 5364 2896 13 0 0 chr11 82604394 82604711 -68178842 - AluYb8 SINE Alu -1 317 1 41010 62 6 7 chr11 82604711 82610069 -68173484 - L1PA6 LINE L1 -790 5364 3 612 244 45 68 chr11 82610082 82610203 -68173350 - L1MDa LINE L1 -2567 3973 3851 1582 199 3 14 chr11 82610203 82610499 -68173054 - AluJo SINE Alu -7 305 13 612 244 45 68 chr11 82610499 82610728 -68172825 - L1MDa LINE L1 -2689 3851 3618 2081 120 7 0 chr11 82610728 82611012 -68172541 - AluSq SINE Alu -14 299 14 612 244 45 68 chr11 82611012 82611162 -68172391 - L1MDa LINE L1 -2922 3618 1583 2087 134 0 0 chr11 82611171 82611454 -68172099 - AluSx SINE Alu -26 286 4 838 233 6 0 chr11 82611484 82611660 -68171893 - FRAM SINE Alu 0 176 1 4426 205 75 28 chr11 82611660 82612746 -68170807 - L1MDa LINE L1 -4959 1581 445 2225 139 11 0 chr11 82612740 82613122 -68170431 - L1MB8 LINE L1 -208 5970 5585 * 1568 191 97 9 chr11 82613656 82613976 -68169577 - MER7A DNA MER2_type 0 346 1 1618 208 3 50 chr11 82614064 82614386 -68169167 + Tigger5 DNA MER2_type 1 307 -2016 1265 150 5 0 chr11 82614389 82614596 -68168957 + Tigger5 DNA MER2_type 2110 2317 -6 1759 243 72 83 chr11 82614615 82616417 -68167136 - L1ME3A LINE L1 -68 6102 4319 3352 198 37 7 chr11 82616657 82617395 -68166158 - L1MB8 LINE L1 -13 6165 5406 766 299 57 0 chr11 82617413 82617677 -68165876 - L1ME3A LINE L1 -1824 4322 4044 2163 105 3 3 chr11 82617787 82618082 -68165471 - AluSq SINE Alu -18 295 1 336 216 67 30 chr11 82618151 82618167 -68165386 - L1MA10 LINE L1 0 6334 6319 2932 210 89 30 chr11 82618167 82619057 -68164496 - L1ME1 LINE L1 -4 6231 5285 1799 148 40 13 chr11 82619091 82619394 -68164159 - AluSx SINE Alu -1 311 1 808 257 18 9 chr11 82619423 82619645 -68163908 - L1ME1 LINE L1 -6139 257 34 301 295 172 0 chr11 82620250 82620372 -68163181 + MIR SINE MIR 19 161 -101 271 217 0 0 chr11 82620390 82620451 -68163102 - MER5A DNA MER1_type -125 64 4 412 350 35 71 chr11 82620682 82620965 -68162588 + L2 LINE L2 2995 3267 -5 635 326 54 18 chr11 82621487 82621708 -68161845 - MIR SINE MIR -31 231 3 250 221 35 106 chr11 82622104 82622217 -68161336 - MIR SINE MIR -102 160 56 198 330 62 45 chr11 82623094 82623206 -68160347 + MIR SINE MIR 57 170 -92 2336 182 24 2 chr11 82623747 82624164 -68159389 - MSTB LTR MaLR 0 426 1 431 301 56 70 chr11 82624320 82624533 -68159020 - MIR SINE MIR -50 212 3 345 316 163 10 chr11 82624589 82624798 -68158755 - MIR SINE MIR -10 252 12 189 317 67 75 chr11 82624966 82625086 -68158467 + MIR3 SINE MIR 67 185 -23 22 35 0 0 chr11 82625213 82625242 -68158311 + AT_rich Low_complexity Low_complexity 1 29 0 237 349 55 9 chr11 82626562 82626671 -68156882 - L2 LINE L2 -237 3035 2922 430 268 73 8 chr11 82626743 82626866 -68156687 - MIR SINE MIR -112 150 20 280 283 110 29 chr11 82628318 82628491 -68155062 + HAL1 LINE L1 798 984 -1523 971 283 65 28 chr11 82628503 82628903 -68154650 + L1MCc LINE L1 24 438 -5985 290 252 9 19 chr11 82628902 82629009 -68154544 - L1MCa LINE L1 -4902 1524 1419 * 1902 104 0 0 chr11 82629047 82629296 -68154257 + AluSx SINE Alu 53 301 -11 312 266 92 28 chr11 82629296 82629405 -68154148 + L1MCc LINE L1 2580 2695 -4427 467 156 0 0 chr11 82629505 82629582 -68153971 + AluS SINE Alu 224 300 -11 3473 225 63 48 chr11 82629611 82629697 -68153856 + L1MCc LINE L1 2618 2701 -4240 2352 71 7 0 chr11 82629697 82630008 -68153545 - AluSg SINE Alu 0 313 1 3473 225 63 48 chr11 82630008 82630053 -68153500 + L1MCc LINE L1 2701 2744 -4197 1328 191 0 0 chr11 82630053 82630289 -68153264 + MER46A DNA MER2_type 1 236 0 3473 225 63 48 chr11 82630289 82630652 -68152901 + L1MCc LINE L1 2744 3100 -3841 1724 166 0 44 chr11 82630652 82630972 -68152581 + AluJo SINE Alu 3 308 -4 3473 225 63 48 chr11 82630972 82631979 -68151574 + L1MCc LINE L1 3100 4136 -2805 641 293 53 34 chr11 82631991 82632349 -68151204 + L1MC4 LINE L1 6914 7278 -764 352 258 11 0 chr11 82632348 82632437 -68151116 + L1MC4a LINE L1 7318 7407 -401 * 1727 184 13 7 chr11 82633123 82633422 -68150131 + AluJb SINE Alu 1 301 -11 759 134 0 0 chr11 82633587 82633706 -68149847 - AluSx SINE Alu 0 309 191 1196 71 0 0 chr11 82633707 82633848 -68149705 - AluSx SINE Alu -171 141 1 299 177 0 65 chr11 82634536 82634598 -68148955 - L2 LINE L2 0 3313 3256 369 0 0 0 chr11 82634930 82634971 -68148582 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 907 184 19 0 chr11 82634971 82635129 -68148424 - AluJo SINE Alu -31 281 121 2302 89 0 0 chr11 82635388 82635681 -68147872 + AluY SINE Alu 1 293 -18 311 264 151 0 chr11 82635701 82635807 -68147746 - MIR3 SINE MIR -36 172 51 2046 184 33 13 chr11 82635894 82636285 -68147268 - MER21B LTR ERV1 -113 750 352 807 161 59 149 chr11 82636317 82636572 -68146981 - MER21B LTR ERV1 -621 242 11 1987 159 0 3 chr11 82636707 82637016 -68146537 + AluJb SINE Alu 2 309 -3 1603 158 88 0 chr11 82637346 82637618 -68145935 - AluJb SINE Alu -16 296 1 2215 78 3 14 chr11 82638243 82638539 -68145014 - AluY SINE Alu -18 293 1 376 167 13 26 chr11 82638942 82639020 -68144533 - L1MC5 LINE L1 -50 7911 7835 25 31 0 0 chr11 82639099 82639131 -68144422 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr11 82639198 82639241 -68144312 + AT_rich Low_complexity Low_complexity 1 43 0 230 295 141 39 chr11 82640329 82640407 -68143146 - MIR SINE MIR -103 105 20 554 300 230 20 chr11 82640564 82640907 -68142646 - L2 LINE L2 -2 3311 2897 556 317 83 28 chr11 82641030 82641355 -68142198 - L2 LINE L2 -340 2974 2632 2106 138 3 3 chr11 82641671 82641976 -68141577 + AluSx SINE Alu 1 305 -7 268 326 57 28 chr11 82642004 82642145 -68141408 - L2 LINE L2 -7 3265 3121 224 227 0 0 chr11 82642141 82642185 -68141368 - L2 LINE L2 -7 3306 3263 * 913 213 0 0 chr11 82642369 82642533 -68141020 + FRAM SINE Alu 1 164 -2 241 333 49 39 chr11 82642666 82642768 -68140785 - MIR SINE MIR -78 130 28 444 19 0 0 chr11 82643123 82643176 -68140377 + (TG)n Simple_repeat Simple_repeat 2 54 0 738 181 0 0 chr11 82645548 82645664 -68137889 + FLAM_A SINE Alu 1 116 -17 23 68 0 0 chr11 82645664 82645708 -68137845 + AT_rich Low_complexity Low_complexity 1 44 0 380 205 185 55 chr11 82645711 82645911 -68137642 + MIR SINE MIR 1 226 -36 26 0 0 0 chr11 82645922 82645948 -68137605 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr11 82647045 82647083 -68136470 + AT_rich Low_complexity Low_complexity 1 38 0 1030 249 68 39 chr11 82647674 82648305 -68135248 + L1MEd LINE L1 962 1613 -4516 746 120 0 0 chr11 82648533 82648650 -68134903 - L1M1 LINE L1 -4705 2860 2744 2195 94 3 0 chr11 82648727 82649014 -68134539 - AluSc SINE Alu -1 308 21 15874 135 73 12 chr11 82649053 82651648 -68131905 - L1M1 LINE L1 -4801 2764 13 2812 219 52 16 chr11 82651646 82652098 -68131455 - L1M4 LINE L1 -2790 3854 3419 * 1915 167 0 0 chr11 82652098 82652391 -68131162 + AluJo SINE Alu 1 293 -19 2812 219 52 16 chr11 82652391 82653536 -68130017 - L1M4 LINE L1 -3225 3419 2009 906 299 87 40 chr11 82653543 82654243 -68129310 - L1M4 LINE L1 -5805 737 5 222 261 80 34 chr11 82654271 82654359 -68129194 - L2 LINE L2 -536 2778 2687 534 239 36 6 chr11 82654807 82654974 -68128579 + MER104 DNA Tc2 3 174 -6 285 288 144 8 chr11 82657318 82657436 -68126117 - MIR3 SINE MIR 0 208 75 278 212 285 30 chr11 82657832 82657997 -68125556 + MIR SINE MIR 42 248 -14 12124 131 74 30 chr11 82658267 82660519 -68123034 + Tigger1 DNA MER2_type 1 2360 -58 744 188 0 0 chr11 82660519 82660652 -68122901 - FLAM_C SINE Alu 0 133 1 12124 131 74 30 chr11 82660652 82660714 -68122839 + Tigger1 DNA MER2_type 2360 2418 0 340 320 40 59 chr11 82660861 82661114 -68122439 + L2 LINE L2 2813 3060 -212 186 295 108 23 chr11 82661236 82661365 -68122188 + L2 LINE L2 3166 3305 -8 262 294 158 7 chr11 82663527 82663673 -68119880 + MIR SINE MIR 88 255 -7 187 163 20 82 chr11 82663639 82663688 -68119865 + L2 LINE L2 3267 3312 -1 * 590 297 44 26 chr11 82663925 82664309 -68119244 + L1ME LINE L1 5259 5649 -515 1565 189 23 26 chr11 82664512 82664819 -68118734 - AluJo SINE Alu -6 306 1 23 33 0 0 chr11 82665278 82665308 -68118245 + AT_rich Low_complexity Low_complexity 1 30 0 246 255 10 71 chr11 82665908 82666006 -68117547 - L2 LINE L2 0 3313 3222 1741 153 45 17 chr11 82666585 82666873 -68116680 + AluJb SINE Alu 1 296 -16 341 275 25 50 chr11 82666931 82667051 -68116502 + L1MEd LINE L1 1073 1189 -4930 317 299 158 23 chr11 82667053 82667230 -68116323 + L1MEd LINE L1 3244 3444 -2685 322 237 69 23 chr11 82667569 82667700 -68115853 + L1MEd LINE L1 3793 3929 -2200 1674 161 7 37 chr11 82667739 82668037 -68115516 + AluJo SINE Alu 1 289 -23 503 168 20 20 chr11 82668113 82668214 -68115339 + MLT1E1 LTR MaLR 3 103 -551 238 196 0 0 chr11 82668230 82668276 -68115277 - MER2 DNA MER2_type -30 315 270 21 57 0 0 chr11 82668296 82668331 -68115222 + AT_rich Low_complexity Low_complexity 1 35 0 958 137 25 69 chr11 82668725 82668929 -68114624 - MER2 DNA MER2_type -150 195 1 1614 181 99 76 chr11 82668950 82669424 -68114129 + MLT1E1 LTR MaLR 170 654 0 517 236 115 13 chr11 82669425 82669582 -68113971 + MIR SINE MIR 82 254 -8 226 335 39 13 chr11 82669666 82669821 -68113732 + L1MEd LINE L1 3992 4150 -1979 2244 111 0 13 chr11 82669911 82670218 -68113335 + AluSq SINE Alu 1 303 -10 2032 76 8 4 chr11 82670554 82670818 -68112735 + AluY SINE Alu 45 309 -2 211 133 0 22 chr11 82670843 82670888 -68112665 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 1507 130 7 35 chr11 82671065 82671349 -68112204 - AluSc SINE Alu -33 276 1 974 267 39 22 chr11 82671641 82672097 -68111456 - MLT2E LTR ERVL 0 628 132 302 264 28 11 chr11 82672135 82672256 -68111297 - MLT2E LTR ERVL -502 126 5 240 272 191 37 chr11 82672340 82672476 -68111077 - MIR SINE MIR -22 240 84 418 291 36 10 chr11 82672566 82672813 -68110740 + L1ME3A LINE L1 5665 5917 -247 278 244 114 24 chr11 82673018 82673141 -68110412 + MLT1L LTR MaLR 120 253 -362 402 231 132 0 chr11 82673171 82673292 -68110261 + L1ME3A LINE L1 6029 6165 -5 301 288 117 0 chr11 82673372 82673483 -68110070 + MLT1L LTR MaLR 370 493 -122 22 35 0 0 chr11 82673609 82673638 -68109915 + AT_rich Low_complexity Low_complexity 1 29 0 201 286 0 0 chr11 82673867 82673916 -68109637 - L2 LINE L2 -4 3309 3261 315 204 204 21 chr11 82674310 82674403 -68109150 + MIR SINE MIR 15 124 -138 686 248 150 10 chr11 82674429 82674802 -68108751 - MLT1J LTR MaLR -25 486 1 629 266 127 66 chr11 82674907 82674984 -68108569 + HAL1 LINE L1 22 93 -2414 2121 127 3 10 chr11 82674984 82675298 -68108255 + AluSx SINE Alu 1 312 0 629 266 127 66 chr11 82675298 82675708 -68107845 + HAL1 LINE L1 93 539 -1968 2815 235 118 54 chr11 82675873 82677469 -68106084 + HAL1 LINE L1 805 2502 -5 255 294 118 0 chr11 82677665 82677767 -68105786 - L2 LINE L2 -186 3086 2973 615 232 78 42 chr11 82679392 82679737 -68103816 + LTR18B LTR ERVL 1 614 0 180 296 42 14 chr11 82680081 82680152 -68103401 + MIR SINE MIR 3 75 -187 199 268 154 16 chr11 82680197 82680320 -68103233 - L2 LINE L2 -36 3277 3138 268 322 168 0 chr11 82681269 82681418 -68102135 - MIR SINE MIR -60 202 29 22 35 0 0 chr11 82681486 82681515 -68102038 + AT_rich Low_complexity Low_complexity 1 29 0 308 286 86 63 chr11 82682410 82682585 -68100968 + L2 LINE L2 2796 2974 -340 363 275 0 11 chr11 82682661 82682752 -68100801 + L2 LINE L2 3223 3312 -1 721 324 109 66 chr11 82682956 82683517 -68100036 + L2 LINE L2 1798 2334 -980 2127 123 3 0 chr11 82683517 82683801 -68099752 + AluSx SINE Alu 1 288 -24 315 0 0 0 chr11 82683801 82683836 -68099717 + (CA)n Simple_repeat Simple_repeat 2 36 0 721 324 109 66 chr11 82683844 82684182 -68099371 + L2 LINE L2 2334 2751 -563 2280 94 3 3 chr11 82684182 82684479 -68099074 + AluSc SINE Alu 1 297 -12 721 324 109 66 chr11 82684479 82684636 -68098917 + L2 LINE L2 2751 2900 -414 1900 214 137 16 chr11 82684663 82685233 -68098320 + L2 LINE L2 2413 3052 -261 1764 172 0 0 chr11 82685572 82685833 -68097720 - AluJb SINE Alu -46 266 6 274 210 25 12 chr11 82685903 82685984 -68097569 - L1MC4 LINE L1 -1 8041 7960 238 200 0 20 chr11 82686015 82686065 -68097488 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 2438 69 0 0 chr11 82686208 82686499 -68097054 - AluY SINE Alu -20 291 1 319 255 48 41 chr11 82686500 82686645 -68096908 - L1ME2 LINE L1 -33 6131 5986 1227 173 4 20 chr11 82686745 82686993 -68096560 - L1ME2 LINE L1 -416 5748 5505 458 159 155 71 chr11 82686991 82687217 -68096336 - L1MC5 LINE L1 -442 7519 7275 * 685 332 58 23 chr11 82687355 82687728 -68095825 - L2 LINE L2 -243 3070 2684 180 77 0 0 chr11 82688398 82688424 -68095129 + (TTG)n Simple_repeat Simple_repeat 3 28 0 1903 142 16 26 chr11 82688741 82689044 -68094509 + AluJb SINE Alu 3 302 -10 260 266 29 79 chr11 82689806 82689945 -68093608 - MIR SINE MIR -78 184 53 794 177 13 38 chr11 82690123 82690281 -68093272 + MER20 DNA MER1_type 29 182 -37 4154 99 190 104 chr11 82691010 82692450 -68091103 + pTR5 LTR ERV1 738 2438 0 206 354 0 0 chr11 82692487 82692552 -68091001 - L3 LINE CR1 -3 1574 1510 568 262 177 27 chr11 82692565 82692966 -68090587 - MLT1C LTR MaLR 0 467 7 435 324 105 14 chr11 82693065 82693284 -68090269 - L3 LINE CR1 -217 1360 1122 536 289 26 36 chr11 82693529 82693723 -68089830 - L3 LINE CR1 -488 1089 898 325 304 72 16 chr11 82693744 82693869 -68089684 - L2 LINE L2 -8 3264 3133 25 35 0 52 chr11 82694222 82694280 -68089273 + AT_rich Low_complexity Low_complexity 1 55 0 2203 95 3 3 chr11 82697092 82697387 -68086166 - AluSg SINE Alu -2 308 14 2056 125 0 10 chr11 82698105 82698402 -68085151 + AluSx SINE Alu 1 294 -18 222 276 17 0 chr11 82698688 82698746 -68084807 + (CA)n Simple_repeat Simple_repeat 1 59 0 1789 184 78 26 chr11 82700720 82701183 -68082370 + L1MA9 LINE L1 5781 6267 -45 331 269 9 46 chr11 82701247 82701355 -68082198 - L2 LINE L2 0 3313 3210 926 187 68 133 chr11 82701363 82701679 -68081874 + L1MB4 LINE L1 5879 6174 -10 2289 263 78 66 chr11 82701681 82702931 -68080622 - L2 LINE L2 -74 3239 1971 201 39 0 0 chr11 82702976 82703002 -68080551 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 250 146 55 0 chr11 82703043 82703098 -68080455 - L2 LINE L2 -1607 1707 1650 6264 185 48 12 chr11 82703496 82703707 -68079846 + Charlie1a DNA MER1_type 20 222 -2539 21 0 0 0 chr11 82703707 82703728 -68079825 + AT_rich Low_complexity Low_complexity 1 21 0 6264 185 48 12 chr11 82703728 82704882 -68078671 + Charlie1a DNA MER1_type 222 1455 0 239 240 21 64 chr11 82705368 82705499 -68078054 - MIR SINE MIR -73 189 35 3850 156 42 46 chr11 82705900 82705957 -68077596 - L1MB8 LINE L1 -12 6166 6110 2050 94 24 27 chr11 82705957 82706254 -68077299 + AluSx SINE Alu 1 296 -16 3850 156 42 46 chr11 82706254 82706852 -68076701 - L1MB8 LINE L1 -68 6110 5513 2651 89 3 24 chr11 82706852 82707224 -68076329 - THE1B LTR MaLR 0 364 1 3850 156 42 46 chr11 82707224 82707431 -68076122 - L1MB8 LINE L1 -665 5513 5307 288 0 0 0 chr11 82707431 82707463 -68076090 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1016 204 0 0 chr11 82707486 82707658 -68075895 + AluJb SINE Alu 124 295 -17 252 159 72 0 chr11 82707750 82707819 -68075734 + (TA)n Simple_repeat Simple_repeat 2 75 0 21 0 0 0 chr11 82707852 82707873 -68075680 + AT_rich Low_complexity Low_complexity 1 21 0 448 305 45 11 chr11 82708200 82708377 -68075176 - MIR SINE MIR -52 210 28 24 0 0 0 chr11 82709081 82709105 -68074448 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr11 82709122 82709144 -68074409 + AT_rich Low_complexity Low_complexity 1 22 0 2209 75 0 78 chr11 82709254 82709574 -68073979 + AluY SINE Alu 1 295 -16 196 338 66 20 chr11 82709579 82709730 -68073823 + MIR3 SINE MIR 51 208 0 2078 135 7 3 chr11 82709838 82710134 -68073419 + AluJo SINE Alu 6 302 -10 1254 233 151 0 chr11 82710511 82710855 -68072698 - MSTD LTR MaLR 0 396 1 25 31 0 0 chr11 82711122 82711154 -68072399 + AT_rich Low_complexity Low_complexity 1 32 0 296 355 36 0 chr11 82711154 82711264 -68072289 - MIR SINE MIR -67 141 28 245 268 165 39 chr11 82711467 82711594 -68071959 + MIR SINE MIR 2 144 -118 2115 115 7 14 chr11 82711846 82712141 -68071412 - AluSx SINE Alu -19 293 1 214 379 58 0 chr11 82712154 82712241 -68071312 + MIR3 SINE MIR 108 199 -9 664 281 47 92 chr11 82712375 82712883 -68070670 + L1ME3A LINE L1 5680 6164 -6 2593 46 0 0 chr11 82712890 82713192 -68070361 + AluY SINE Alu 1 302 -9 1792 161 25 14 chr11 82713380 82713666 -68069887 + AluJb SINE Alu 1 289 -23 342 122 27 40 chr11 82713681 82713755 -68069798 + L1PA16 LINE L1 6092 6164 -2 332 174 87 0 chr11 82713809 82713878 -68069675 - MIR SINE MIR -76 186 112 2250 103 10 16 chr11 82715412 82715722 -68067831 + AluSx SINE Alu 1 308 -4 289 236 45 67 chr11 82716002 82716091 -68067462 + MER5C DNA MER1_type 1 87 -237 249 308 62 54 chr11 82718158 82718288 -68065265 - MIR SINE MIR -74 188 58 * 334 263 74 74 chr11 82718284 82718459 -68065094 - MIR SINE MIR -38 224 50 1275 166 73 93 chr11 82718489 82718813 -68064740 - AluJb SINE Alu 0 318 1 472 254 92 126 chr11 82719175 82719644 -68063909 + L2 LINE L2 2806 3258 -14 5090 236 143 45 chr11 82720229 82720493 -68063060 - HAL1 LINE L1 0 2507 2270 3236 204 22 24 chr11 82720493 82721215 -68062338 + MER72 LTR ERV1 1 721 -1 5090 236 143 45 chr11 82721215 82722469 -68061084 - HAL1 LINE L1 -237 2270 706 16960 45 2 11 chr11 82722469 82725394 -68058159 - L1PA5 LINE L1 -3 6151 3249 5090 236 143 45 chr11 82725394 82726059 -68057494 - HAL1 LINE L1 -1801 706 108 236 134 12 37 chr11 82726120 82726202 -68057351 + (TA)n Simple_repeat Simple_repeat 2 81 0 1928 183 0 10 chr11 82726217 82726523 -68057030 + AluJo SINE Alu 1 303 -9 677 256 116 12 chr11 82726557 82726807 -68056746 + L1ME LINE L1 26 301 -5769 513 299 86 38 chr11 82727008 82727322 -68056231 + L3 LINE CR1 1241 1569 -8 255 271 136 54 chr11 82727898 82728156 -68055397 + L2 LINE L2 2812 3090 -182 222 62 0 0 chr11 82728675 82728707 -68054846 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 404 321 121 5 chr11 82728891 82729081 -68054472 - MIR SINE MIR -4 258 47 185 452 48 0 chr11 82729823 82729907 -68053646 - L2 LINE L2 -32 3240 3153 626 280 0 7 chr11 82729936 82730086 -68053467 + MIR SINE MIR 93 241 -21 359 315 76 6 chr11 82730105 82730581 -68052972 - L1M4 LINE L1 -1495 4651 4143 212 200 25 0 chr11 82730995 82731035 -68052518 + L2 LINE L2 3264 3304 -9 298 138 46 0 chr11 82731181 82731246 -68052307 - MLT1E2 LTR MaLR 0 624 557 7191 152 25 10 chr11 82731257 82733441 -68050112 - L1PA13 LINE L1 -25 6138 3911 1986 192 48 3 chr11 82733441 82733940 -68049613 - MLT1E2 LTR MaLR -56 570 2 260 312 79 45 chr11 82734356 82734558 -68048995 + L3 LINE CR1 1056 1264 -313 463 339 64 0 chr11 82734711 82734882 -68048671 + MIR SINE MIR 49 230 -32 301 221 0 35 chr11 82735064 82735150 -68048403 + MIR SINE MIR 166 248 -14 1387 161 0 5 chr11 82735836 82736047 -68047506 + AluJb SINE Alu 86 295 -17 1941 221 37 35 chr11 82736047 82736095 -68047458 + L1ME1 LINE L1 5390 5436 -730 1938 167 6 6 chr11 82736095 82736407 -68047146 + AluJb SINE Alu 1 312 0 1941 221 37 35 chr11 82736407 82736905 -68046648 + L1ME1 LINE L1 5436 5937 -229 2322 105 0 7 chr11 82737002 82737297 -68046256 - AluSx SINE Alu -19 293 1 22 0 0 0 chr11 82738923 82738945 -68044608 + AT_rich Low_complexity Low_complexity 1 22 0 358 343 110 0 chr11 82740100 82740246 -68043307 - MIR SINE MIR -70 192 31 302 137 39 0 chr11 82740261 82740312 -68043241 + L2 LINE L2 3261 3313 0 242 93 0 23 chr11 82740822 82740865 -68042688 + (TA)n Simple_repeat Simple_repeat 2 43 0 776 290 53 14 chr11 82740869 82741076 -68042477 - MIR SINE MIR 0 262 48 1565 147 37 0 chr11 82741489 82741734 -68041819 - AluSx SINE Alu -9 303 50 337 263 83 45 chr11 82741757 82741890 -68041663 + HAL1 LINE L1 60 197 -2310 732 271 80 77 chr11 82741899 82742571 -68040982 + HAL1 LINE L1 240 913 -1594 2591 229 44 106 chr11 82742640 82743344 -68040209 + HAL1 LINE L1 1288 1876 -631 1893 138 54 7 chr11 82743344 82743641 -68039912 - AluJb SINE Alu -1 311 1 2591 229 44 106 chr11 82743641 82744235 -68039318 + HAL1 LINE L1 1876 2505 -2 602 280 6 13 chr11 82744323 82744480 -68039073 + MIR3 SINE MIR 52 207 -1 615 321 37 5 chr11 82745031 82745221 -68038332 + MIR3 SINE MIR 7 202 -6 212 308 165 0 chr11 82746015 82746106 -68037447 - L2 LINE L2 0 3272 3167 211 352 102 9 chr11 82747722 82747830 -68035723 - L2 LINE L2 -12 3260 3143 269 304 49 33 chr11 82747943 82748127 -68035426 - L1M4 LINE L1 -1208 4938 4752 319 283 85 28 chr11 82748650 82748827 -68034726 - L1M4 LINE L1 -1577 4569 4383 660 276 157 56 chr11 82748850 82749670 -68033883 - L1M4 LINE L1 -1796 4350 3441 1375 296 164 31 chr11 82749670 82750710 -68032843 + L2 LINE L2 1822 2997 -275 415 114 80 0 chr11 82750860 82750948 -68032605 - MER69 DNA AcHobo -52 2474 2380 186 322 33 56 chr11 82752844 82752934 -68030619 - L2 LINE L2 -253 3060 2973 555 307 113 9 chr11 82752939 82753181 -68030372 + MIR SINE MIR 3 261 -1 390 317 41 35 chr11 82753525 82753731 -68029822 - MIR3 SINE MIR -55 207 3 236 333 0 27 chr11 82754283 82754358 -68029195 + MIR3 SINE MIR 3 75 -133 226 0 0 0 chr11 82754388 82754413 -68029140 + (TTTTG)n Simple_repeat Simple_repeat 4 160 0 2361 79 0 0 chr11 82754413 82754693 -68028860 - AluSg SINE Alu -30 280 1 700 293 54 5 chr11 82756002 82756224 -68027329 - L3b LINE CR1 -90 1493 1261 350 290 51 36 chr11 82756354 82756492 -68027061 - L1ME4a LINE L1 -6 6115 5976 1017 142 56 95 chr11 82756516 82756580 -68026973 - MER33 DNA MER1_type -2261 324 259 2411 62 28 0 chr11 82756580 82756870 -68026683 - AluY SINE Alu -13 298 1 1017 142 56 95 chr11 82756870 82757142 -68026411 - MER33 DNA MER1_type -2326 259 1 233 293 28 9 chr11 82757152 82757258 -68026295 - L1ME4a LINE L1 -238 5883 5776 226 370 65 57 chr11 82757576 82757822 -68025731 + L2 LINE L2 2985 3232 -40 2021 82 75 14 chr11 82758001 82758282 -68025271 + AluSq SINE Alu 1 298 -15 192 40 0 0 chr11 82758282 82758307 -68025246 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 2274 112 0 0 chr11 82758307 82758601 -68024952 + AluSq SINE Alu 1 294 -19 2084 143 6 6 chr11 82758725 82759060 -68024493 + MER1B DNA MER1_type 3 337 0 969 141 0 7 chr11 82759244 82759416 -68024137 - FRAM SINE Alu 0 170 1 213 39 0 0 chr11 82759457 82759483 -68024070 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 826 217 32 44 chr11 82759614 82759863 -68023690 - MIR SINE MIR -5 257 12 369 287 8 0 chr11 82759966 82760088 -68023465 + L2 LINE L2 2035 2157 -1157 343 322 110 4 chr11 82760273 82760500 -68023053 + L2 LINE L2 2462 2712 -602 348 175 0 0 chr11 82760501 82760598 -68022955 + CT-rich Low_complexity Low_complexity 2 98 0 242 353 125 46 chr11 82760608 82761064 -68022489 + L2 LINE L2 2778 3258 -14 730 241 41 28 chr11 82763540 82763773 -68019780 + MIR SINE MIR 20 256 -6 262 291 149 14 chr11 82763781 82763922 -68019631 - MIR SINE MIR -1 261 102 2404 91 3 25 chr11 82764572 82764891 -68018662 - AluSx SINE Alu 0 312 1 854 162 18 36 chr11 82764891 82765058 -68018495 - FRAM SINE Alu -2 164 1 281 273 61 10 chr11 82765191 82765290 -68018263 + MIR SINE MIR 42 145 -63 1910 152 36 12 chr11 82765480 82765809 -68017744 + MER1B DNA MER1_type 1 337 0 210 125 0 0 chr11 82765864 82765896 -68017657 - MIR SINE MIR -132 76 45 28 29 0 0 chr11 82766869 82766904 -68016649 + AT_rich Low_complexity Low_complexity 1 35 0 389 267 53 13 chr11 82766926 82767076 -68016477 + L1ME4a LINE L1 5693 5848 -273 392 271 47 59 chr11 82767078 82767130 -68016423 + L1ME4a LINE L1 5881 5932 -189 1908 160 37 0 chr11 82767130 82767430 -68016123 - AluJo SINE Alu -1 311 1 392 271 47 59 chr11 82767430 82767547 -68016006 + L1ME4a LINE L1 5932 6048 -73 1789 161 3 30 chr11 82768249 82768547 -68015006 + AluJb SINE Alu 1 290 -22 26 0 0 0 chr11 82768547 82768573 -68014980 + AT_rich Low_complexity Low_complexity 1 26 0 184 298 122 15 chr11 82768701 82768832 -68014721 + MIR SINE MIR 97 241 -21 252 253 46 0 chr11 82770109 82770196 -68013357 + MIR SINE MIR 45 135 -127 471 78 0 0 chr11 82771029 82771093 -68012460 + (TC)n Simple_repeat Simple_repeat 1 64 0 428 365 46 18 chr11 82771278 82771560 -68011993 - L3 LINE CR1 -305 1272 983 21 0 0 0 chr11 82772677 82772698 -68010855 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 82775050 82775071 -68008482 + AT_rich Low_complexity Low_complexity 1 21 0 199 216 49 78 chr11 82775580 82775682 -68007871 - L2 LINE L2 -321 2951 2853 2376 137 30 44 chr11 82775960 82776154 -68007399 + MSTB LTR MaLR 2 197 -229 1708 105 4 0 chr11 82776154 82776383 -68007170 + AluY SINE Alu 77 306 -5 2376 137 30 44 chr11 82776383 82776619 -68006934 + MSTB LTR MaLR 197 426 0 189 282 99 0 chr11 82776729 82776800 -68006753 + MIR SINE MIR 62 139 -123 273 256 74 50 chr11 82776954 82777075 -68006478 + MIR SINE MIR 88 211 -51 2440 96 0 0 chr11 82777248 82777551 -68006002 + AluSx SINE Alu 4 306 -6 306 275 33 0 chr11 82778215 82778306 -68005247 + MIR SINE MIR 53 146 -62 2431 46 3 30 chr11 82778821 82779125 -68004428 + AluY SINE Alu 1 296 -15 341 295 18 0 chr11 82780454 82780566 -68002987 - L2 LINE L2 -21 3251 3138 305 272 169 47 chr11 82780866 82781167 -68002386 - L2 LINE L2 -1407 1907 1570 708 225 71 42 chr11 82781560 82781871 -68001682 + L1MC5 LINE L1 7015 7334 -627 1155 219 52 3 chr11 82781872 82782160 -68001393 + MER33 DNA MER1_type 1 302 -22 1191 219 108 26 chr11 82782194 82782659 -68000894 + L1MC5 LINE L1 7330 7832 -129 214 298 75 43 chr11 82782702 82782890 -68000663 + L2 LINE L2 2864 3057 -215 400 250 70 16 chr11 82783102 82783230 -68000323 - MIR3 SINE MIR -63 145 11 258 330 0 10 chr11 82785812 82785915 -67997638 - L2 LINE L2 -505 2809 2708 2329 104 0 3 chr11 82785917 82786215 -67997338 - AluSx SINE Alu -7 305 9 444 287 125 49 chr11 82786618 82787229 -67996324 + L1ME LINE L1 117 819 -5251 2288 130 0 0 chr11 82787229 82787529 -67996024 - AluSx SINE Alu -12 300 1 444 287 125 49 chr11 82787529 82787744 -67995809 + L1ME LINE L1 819 1016 -5054 2501 279 79 1 chr11 82788595 82789368 -67994185 - MER69 DNA AcHobo -1615 911 79 515 265 27 7 chr11 82789889 82790073 -67993480 + MIR SINE MIR 8 191 -68 280 360 11 1 chr11 82794314 82794459 -67989094 + MIR SINE MIR 29 150 -58 197 0 71 0 chr11 82797194 82797222 -67986331 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1694 153 4 0 chr11 82797234 82797489 -67986064 - AluSx SINE Alu -56 256 1 518 169 119 51 chr11 82798066 82798184 -67985369 - FLAM_C SINE Alu -16 127 2 189 226 48 16 chr11 82798184 82798246 -67985307 + MER5A DNA MER1_type 48 111 -78 2129 91 7 0 chr11 82798474 82798750 -67984803 - AluSp SINE Alu -4 309 32 216 270 0 16 chr11 82799311 82799374 -67984179 - MIR3 SINE MIR -22 186 125 2164 66 0 4 chr11 82799374 82799632 -67983921 - AluSg SINE Alu -53 257 1 318 281 9 35 chr11 82799946 82800060 -67983493 - MIR SINE MIR -54 208 98 275 341 7 29 chr11 82800281 82800419 -67983134 - L3 LINE CR1 -98 1479 1345 193 287 115 0 chr11 82800575 82800662 -67982891 + MIR SINE MIR 53 149 -59 2493 42 0 7 chr11 82801441 82801786 -67981767 - AluY SINE Alu 0 343 1 211 269 0 0 chr11 82802406 82802458 -67981095 - MIR SINE MIR -79 129 78 183 80 0 0 chr11 82803455 82803480 -67980073 + (GGA)n Simple_repeat Simple_repeat 1 25 0 229 344 45 19 chr11 82804347 82804501 -67979052 + MIR SINE MIR 80 237 -25 * 347 309 63 66 chr11 82804485 82804880 -67978673 + L2 LINE L2 2900 3296 -17 220 299 10 21 chr11 82805618 82805715 -67977838 - MIR SINE MIR -130 132 37 1056 133 0 0 chr11 82805853 82806033 -67977520 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 204 350 111 0 chr11 82806756 82806873 -67976680 - MIR SINE MIR -39 223 94 291 95 0 0 chr11 82807172 82807214 -67976339 - MER5A DNA MER1_type -74 115 74 346 118 0 0 chr11 82807984 82808035 -67975518 - MER5A DNA MER1_type -74 115 65 442 273 97 0 chr11 82808376 82808530 -67975023 + MIR SINE MIR 16 184 -78 328 262 40 95 chr11 82809008 82809134 -67974419 + MIR3 SINE MIR 67 185 -23 297 322 254 0 chr11 82809554 82809731 -67973822 - MIR SINE MIR -12 250 29 514 273 89 39 chr11 82811252 82811481 -67972072 - MIR SINE MIR -21 241 6 355 350 102 5 chr11 82811688 82811885 -67971668 - MIR SINE MIR -35 227 12 180 125 0 0 chr11 82813177 82813209 -67970344 + (CGGG)n Simple_repeat Simple_repeat 4 35 0 207 281 80 55 chr11 82813290 82813489 -67970064 + L2 LINE L2 2857 3060 -212 510 296 31 6 chr11 82813970 82814129 -67969424 + MIR SINE MIR 34 196 -66 272 268 107 54 chr11 82814137 82814249 -67969304 - MIR3 SINE MIR -86 122 5 383 350 123 9 chr11 82815226 82815446 -67968107 + MIR SINE MIR 17 261 -1 271 276 37 45 chr11 82815729 82815863 -67967690 - L2 LINE L2 -175 3097 2965 253 252 187 32 chr11 82816272 82816395 -67967158 + MIR3 SINE MIR 60 201 -7 1212 251 177 14 chr11 82816849 82817358 -67966195 + L2 LINE L2 1990 2581 -733 251 331 73 37 chr11 82817396 82817532 -67966021 - MIR3 SINE MIR -55 153 13 224 77 26 0 chr11 82817906 82817945 -67965608 + (TA)n Simple_repeat Simple_repeat 1 40 0 1702 153 6 72 chr11 82818897 82819217 -67964336 - AluJb SINE Alu -13 299 1 1134 113 12 0 chr11 82819322 82819482 -67964071 - AluSg/x SINE Alu -33 279 118 356 250 46 9 chr11 82820043 82820151 -67963402 - MIR3 SINE MIR -8 200 89 298 292 51 29 chr11 82820159 82820296 -67963257 - L2 LINE L2 -208 3064 2925 463 255 9 9 chr11 82820476 82820582 -67962971 + MIR SINE MIR 21 126 -136 306 203 58 0 chr11 82821073 82821142 -67962411 + L2 LINE L2 3019 3091 -181 289 291 45 0 chr11 82821210 82821320 -67962233 + MLT1I LTR MaLR 282 396 -13 524 200 230 0 chr11 82822112 82822247 -67961306 + MER103 DNA DNA 1 166 0 190 347 0 0 chr11 82822619 82822668 -67960885 - L2 LINE L2 0 3272 3224 531 308 84 26 chr11 82823523 82823750 -67959803 - MIR SINE MIR -15 247 8 218 157 0 20 chr11 82823773 82823824 -67959729 + GA-rich Low_complexity Low_complexity 1 50 0 300 372 93 11 chr11 82823878 82824061 -67959492 + MIR SINE MIR 59 256 -6 238 309 25 0 chr11 82824162 82824243 -67959310 + MIR3 SINE MIR 109 191 -17 391 239 78 7 chr11 82824312 82824454 -67959099 - MIR3 SINE MIR -23 185 34 215 343 15 0 chr11 82824938 82825005 -67958548 + MIR SINE MIR 25 92 -116 219 337 89 0 chr11 82825280 82825381 -67958172 + MIR SINE MIR 124 233 -29 585 242 20 20 chr11 82825632 82825781 -67957772 - MIR3 SINE MIR -50 158 10 1944 222 28 15 chr11 82826632 82827092 -67956461 + MLT1C LTR MaLR 1 466 -1 354 319 101 27 chr11 82827129 82827317 -67956236 + MIR SINE MIR 51 252 -10 237 198 31 0 chr11 82827747 82827843 -67955710 + (TCCA)n Simple_repeat Simple_repeat 3 101 0 237 303 27 15 chr11 82828327 82828438 -67955115 + MIR SINE MIR 70 145 -63 349 372 0 0 chr11 82828758 82828871 -67954682 + MIR SINE MIR 28 140 -68 419 215 21 0 chr11 82828921 82829014 -67954539 - MER103 DNA DNA -18 148 54 278 303 53 40 chr11 82829576 82829728 -67953825 + MIR3 SINE MIR 45 198 -10 269 302 88 24 chr11 82829809 82830000 -67953553 + L2 LINE L2 2768 2982 -290 427 274 7 72 chr11 82830208 82830284 -67953269 + MIR SINE MIR 76 155 -107 2070 98 11 14 chr11 82830284 82830613 -67952940 + AluSx SINE Alu 1 328 0 427 274 7 72 chr11 82830613 82830638 -67952915 + MIR SINE MIR 155 180 -82 1369 194 57 18 chr11 82830638 82830921 -67952632 + AluJo SINE Alu 1 294 -18 427 274 7 72 chr11 82830921 82830970 -67952583 + MIR SINE MIR 180 218 -44 1836 111 48 4 chr11 82830980 82831250 -67952303 + AluSc SINE Alu 24 305 -4 364 308 0 0 chr11 82831304 82831395 -67952158 + MIR SINE MIR 36 126 -82 434 236 9 18 chr11 82833097 82833207 -67950346 + MIR SINE MIR 30 138 -70 202 217 100 67 chr11 82834248 82834308 -67949245 - MIR3 SINE MIR -50 158 97 395 259 30 30 chr11 82834515 82834646 -67948907 - MIR SINE MIR -61 147 17 296 211 5 14 chr11 82834626 82834699 -67948854 - MIR SINE MIR -66 142 95 * 761 281 5 43 chr11 82835336 82835546 -67948007 + MIR SINE MIR 36 237 -25 299 300 0 11 chr11 82835548 82835638 -67947915 + (CATATA)n Simple_repeat Simple_repeat 1 89 0 194 361 97 34 chr11 82835841 82836079 -67947474 + L2 LINE L2 2911 3163 -109 299 207 27 126 chr11 82836327 82836438 -67947115 + MIR3 SINE MIR 90 189 -19 263 247 23 29 chr11 82837256 82837360 -67946193 - MIR SINE MIR -61 147 59 246 188 109 16 chr11 82837592 82837656 -67945897 - MIR SINE MIR -65 143 74 22 0 0 0 chr11 82837844 82837866 -67945687 + GC_rich Low_complexity Low_complexity 1 22 0 2362 68 0 3 chr11 82838515 82838822 -67944731 + AluSq SINE Alu 1 306 -7 403 240 143 39 chr11 82838839 82838993 -67944560 - MIR SINE MIR -72 190 21 221 257 27 27 chr11 82839474 82839548 -67944005 + MIR SINE MIR 73 146 -116 35 24 0 0 chr11 82841754 82841796 -67941757 + GC_rich Low_complexity Low_complexity 1 42 0 392 282 1 54 chr11 82843333 82843482 -67940071 + MIR SINE MIR 11 151 -63 256 274 95 12 chr11 82843480 82843564 -67939989 - MIR SINE MIR -64 198 108 * 424 270 86 20 chr11 82844435 82844587 -67938966 + MIR3 SINE MIR 24 185 -23 2231 120 0 0 chr11 82844883 82845191 -67938362 + AluSx SINE Alu 1 308 -4 843 318 44 58 chr11 82845243 82845812 -67937741 - MLT1K LTR MaLR -27 561 1 1456 213 53 55 chr11 82846204 82846697 -67936856 + MLT1D LTR MaLR 2 493 -12 321 355 58 6 chr11 82846774 82846946 -67936607 - MIR SINE MIR -59 203 23 235 250 60 0 chr11 82846951 82847035 -67936518 - L3 LINE CR1 -77 1500 1412 274 257 274 9 chr11 82847711 82847824 -67935729 - MIR3 SINE MIR -9 199 57 435 236 49 57 chr11 82847968 82848091 -67935462 - MIR SINE MIR -135 127 6 268 319 156 0 chr11 82848618 82848753 -67934800 - MER91B DNA MER1_type -22 168 13 262 139 0 0 chr11 82849225 82849268 -67934285 - MIR SINE MIR -142 120 78 528 247 77 35 chr11 82849753 82849923 -67933630 + MIR SINE MIR 8 184 -78 268 308 13 0 chr11 82850033 82850111 -67933442 + MIR3 SINE MIR 98 176 -32 455 257 37 7 chr11 82850450 82850586 -67932967 + MIR SINE MIR 32 171 -91 237 325 39 0 chr11 82851123 82851200 -67932353 - L3 LINE CR1 -559 1018 939 423 362 52 17 chr11 82851942 82852174 -67931379 - MIR SINE MIR 0 262 23 184 254 0 51 chr11 82852680 82852739 -67930814 + MIR SINE MIR 72 127 -135 384 187 33 11 chr11 82854120 82854211 -67929342 + MSTD LTR MaLR 304 396 0 182 226 48 0 chr11 82854654 82854716 -67928837 - MIR SINE MIR -94 114 50 198 191 0 0 chr11 82854872 82854914 -67928639 + G-rich Low_complexity Low_complexity 3 44 0 1722 156 3 24 chr11 82855082 82855377 -67928176 + AluJb SINE Alu 1 289 -23 203 311 52 16 chr11 82855397 82855509 -67928044 + MIR SINE MIR 68 143 -65 210 229 0 0 chr11 82855693 82855741 -67927812 + (CCCTG)n Simple_repeat Simple_repeat 4 51 0 259 308 26 0 chr11 82856063 82856141 -67927412 + MIR SINE MIR 67 146 -62 379 329 177 0 chr11 82856203 82856367 -67927186 + MIR SINE MIR 1 193 -69 1538 175 69 34 chr11 82856386 82856735 -67926818 + MLT1A1 LTR MaLR 5 365 0 480 290 41 63 chr11 82857209 82857478 -67926075 - L2 LINE L2 -97 3175 2913 207 206 48 16 chr11 82858022 82858085 -67925468 + L2 LINE L2 2585 2649 -665 2119 96 10 3 chr11 82858126 82858419 -67925134 + AluSq SINE Alu 6 300 -13 245 226 178 7 chr11 82858561 82858707 -67924846 + L2 LINE L2 2836 3006 -266 294 289 22 0 chr11 82860469 82860559 -67922994 - MIR SINE MIR -63 145 54 406 224 119 0 chr11 82860924 82861058 -67922495 + L1ME LINE L1 5501 5650 -514 252 189 0 0 chr11 82861058 82861111 -67922442 + MER63 DNA MER1_type 1 53 -157 1442 91 0 10 chr11 82861125 82861324 -67922229 + AluSq SINE Alu 5 201 -112 844 74 0 0 chr11 82861324 82861432 -67922121 - AluY SINE Alu -14 297 190 498 172 35 0 chr11 82861435 82861522 -67922031 + AluSg/x SINE Alu 188 277 -33 180 0 0 0 chr11 82861622 82861642 -67921911 + (A)n Simple_repeat Simple_repeat 1 20 0 2130 99 3 3 chr11 82861969 82862276 -67921277 - AluSq SINE Alu 0 307 1 324 323 0 0 chr11 82862573 82862669 -67920884 + MIR SINE MIR 46 141 -67 222 304 87 0 chr11 82862796 82862888 -67920665 - MIR SINE MIR -123 139 40 255 277 143 8 chr11 82863743 82863862 -67919691 - MIR3 SINE MIR -41 167 33 365 254 179 23 chr11 82863967 82864318 -67919235 + MLT1H LTR MaLR 57 537 -12 188 320 90 10 chr11 82864463 82864563 -67918990 + L2 LINE L2 3139 3246 -26 * 239 374 23 15 chr11 82864543 82864674 -67918879 - L3 LINE CR1 -100 1477 1346 556 303 110 9 chr11 82864856 82865074 -67918479 + MIR SINE MIR 23 262 0 220 360 142 20 chr11 82865181 82865428 -67918125 - L2 LINE L2 -338 2976 2700 505 203 10 0 chr11 82865949 82866066 -67917487 - MIR SINE MIR -73 135 34 445 230 10 10 chr11 82866397 82866497 -67917056 - MIR3 SINE MIR -45 163 64 215 310 85 23 chr11 82866490 82866619 -67916934 + L2 LINE L2 3111 3247 -25 * 221 284 57 0 chr11 82866751 82866839 -67916714 - MIR SINE MIR -83 125 33 465 317 76 18 chr11 82867046 82867270 -67916283 - MIR SINE MIR -1 261 25 469 234 154 26 chr11 82867329 82867556 -67915997 + MLT1K LTR MaLR 4 259 -329 326 248 162 8 chr11 82867922 82868039 -67915514 + MIR3 SINE MIR 13 147 -61 440 157 39 0 chr11 82868128 82868230 -67915323 + L1 LINE L1 5225 5330 -816 704 144 0 72 chr11 82868231 82868356 -67915197 + AluJb SINE Alu 1 116 -196 45 19 0 0 chr11 82868356 82868408 -67915145 + AT_rich Low_complexity Low_complexity 1 52 0 4868 139 23 2 chr11 82868412 82869275 -67914278 + L1PA15 LINE L1 5285 6165 0 1081 171 12 21 chr11 82869278 82869518 -67914035 - L1MB7 LINE L1 -21 6163 5926 2516 175 28 31 chr11 82869524 82869830 -67913723 - L1MB7 LINE L1 -310 5864 5558 2276 87 3 19 chr11 82869830 82870002 -67913551 - AluSq SINE Alu -9 304 138 2062 113 3 22 chr11 82870002 82870320 -67913233 - AluSx SINE Alu 0 312 1 2276 87 3 19 chr11 82870320 82870456 -67913097 - AluSq SINE Alu -175 138 1 2516 175 28 31 chr11 82870456 82871000 -67912553 - L1MB7 LINE L1 -616 5558 5019 298 128 8 214 chr11 82871004 82871090 -67912463 - L1MB7 LINE L1 -1227 4919 4861 1706 157 3 30 chr11 82871090 82871395 -67912158 + AluJo SINE Alu 1 297 -15 298 128 8 214 chr11 82871395 82871425 -67912128 - L1MB7 LINE L1 -1285 4861 4827 584 286 88 23 chr11 82872182 82872399 -67911154 - MIR SINE MIR -12 250 20 301 281 111 22 chr11 82873243 82873378 -67910175 + L2 LINE L2 3117 3263 -50 2324 98 0 0 chr11 82873456 82873763 -67909790 - AluSx SINE Alu -5 307 1 205 179 0 0 chr11 82873997 82874036 -67909517 - MIR3 SINE MIR -11 197 159 591 201 41 35 chr11 82874146 82874315 -67909238 - L1MB7 LINE L1 -54 6130 5961 363 237 62 10 chr11 82874317 82874414 -67909139 - MIR SINE MIR -73 135 34 436 212 35 0 chr11 82874664 82874777 -67908776 + L2 LINE L2 2957 3073 -240 852 228 0 0 chr11 82874784 82874951 -67908602 + AluJb SINE Alu 138 304 -8 489 328 6 6 chr11 82875033 82875204 -67908349 + L2 LINE L2 3125 3295 -18 183 80 0 0 chr11 82875205 82875230 -67908323 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 207 327 18 45 chr11 82875925 82876035 -67907518 - MIR SINE MIR -79 129 23 410 290 62 48 chr11 82876091 82876236 -67907317 - MIR3 SINE MIR -48 160 23 242 313 0 12 chr11 82877246 82877329 -67906224 + MIR SINE MIR 176 257 -5 255 278 79 48 chr11 82877687 82877813 -67905740 - MIR3 SINE MIR -6 202 73 485 291 55 50 chr11 82878375 82878557 -67904996 - MIR SINE MIR -58 204 22 727 188 57 32 chr11 82878843 82879033 -67904520 + MIR SINE MIR 35 230 -32 770 187 105 0 chr11 82879136 82879307 -67904246 - MER5A DNA MER1_type 0 189 1 1597 95 78 16 chr11 82880375 82880617 -67902936 - AluSx SINE Alu -10 302 46 194 225 153 27 chr11 82881556 82881667 -67901886 + L2 LINE L2 3147 3271 -1 675 13 0 0 chr11 82882882 82882957 -67900596 + tRNA-Pro-CCT tRNA tRNA 1 75 0 614 27 0 0 chr11 82883194 82883267 -67900286 - tRNA-Pro-CCA tRNA tRNA -2 73 1 614 27 0 0 chr11 82884484 82884557 -67898996 - tRNA-Pro-CCA tRNA tRNA -2 73 1 195 315 82 0 chr11 82885366 82885439 -67898114 + L2 LINE L2 3153 3231 -41 382 243 39 36 chr11 82885497 82885639 -67897914 - MIR3 SINE MIR -68 140 15 623 272 22 56 chr11 82885982 82886214 -67897339 - MIR SINE MIR -16 246 23 2117 101 28 0 chr11 82886325 82886612 -67896941 + AluSq SINE Alu 3 297 -16 320 64 21 0 chr11 82886612 82886659 -67896894 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 189 0 0 0 chr11 82886968 82886989 -67896564 + (GA)n Simple_repeat Simple_repeat 2 22 0 335 220 168 3 chr11 82887030 82887152 -67896401 + MIR SINE MIR 63 191 -22 182 250 217 11 chr11 82887192 82887284 -67896269 + MIR3 SINE MIR 76 186 -22 2253 109 0 0 chr11 82887773 82888077 -67895476 - AluSx SINE Alu -8 304 1 419 239 112 0 chr11 82888732 82888866 -67894687 + MIR SINE MIR 33 181 -81 291 308 32 49 chr11 82889362 82889547 -67894006 - L2 LINE L2 -225 3047 2866 189 331 12 104 chr11 82889609 82889772 -67893781 - L2 LINE L2 -93 3179 3032 213 326 80 0 chr11 82889923 82890061 -67893492 + L2 LINE L2 2637 2785 -529 215 254 34 0 chr11 82890830 82890889 -67892664 + MIR3 SINE MIR 104 164 -44 309 341 11 0 chr11 82890956 82891044 -67892509 + MIR SINE MIR 58 146 -62 442 265 80 20 chr11 82891325 82891476 -67892077 - MIR3 SINE MIR -32 176 17 195 238 20 0 chr11 82891515 82891580 -67891973 - MIR SINE MIR -78 130 64 317 303 30 20 chr11 82892632 82892731 -67890822 - MIR SINE MIR -13 249 150 1989 186 31 3 chr11 82893494 82893849 -67889704 + MLT1A1 LTR MaLR 1 365 0 190 222 0 0 chr11 82893946 82893982 -67889571 + MIR SINE MIR 162 197 -65 203 369 48 16 chr11 82894081 82894268 -67889285 - L2 LINE L2 -398 2916 2724 518 168 273 7 chr11 82894647 82894790 -67888763 + MER91A DNA MER1_type 16 196 0 442 329 41 12 chr11 82895591 82895761 -67887792 - MIR SINE MIR -4 258 84 2130 98 7 3 chr11 82896050 82896345 -67887208 + AluSx SINE Alu 3 298 -14 209 288 36 72 chr11 82896617 82896728 -67886825 - MIR3 SINE MIR -21 187 81 306 318 39 8 chr11 82897196 82897325 -67886228 - MIR3 SINE MIR -12 196 64 291 304 168 0 chr11 82897397 82897522 -67886031 - MIR SINE MIR -70 192 47 501 189 25 33 chr11 82897537 82897659 -67885894 + L1MB2 LINE L1 6051 6171 0 474 115 11 23 chr11 82897670 82897757 -67885796 + L1MB8 LINE L1 6093 6178 0 190 338 0 13 chr11 82897892 82897969 -67885584 + MER5B DNA MER1_type 2 77 -101 253 283 20 79 chr11 82898013 82898165 -67885388 - L2 LINE L2 -229 3043 2901 6536 207 82 65 chr11 82898451 82900178 -67883375 + MER52A LTR ERV1 1 1755 0 452 192 224 0 chr11 82900382 82900507 -67883046 + L1MB5 LINE L1 5963 6115 -59 551 295 98 18 chr11 82901719 82901943 -67881610 + MIR SINE MIR 21 262 0 201 354 0 0 chr11 82902156 82902235 -67881318 - L2 LINE L2 -550 2764 2686 1564 210 107 28 chr11 82902275 82902704 -67880849 - MLT1C LTR MaLR -1 466 4 255 280 47 9 chr11 82903191 82903298 -67880255 - MIR3 SINE MIR -86 122 12 1092 151 0 0 chr11 82904376 82904542 -67879011 + AluJb SINE Alu 137 302 -10 1509 111 4 35 chr11 82904588 82904814 -67878739 + AluSq SINE Alu 1 219 -94 1097 147 0 6 chr11 82904875 82905052 -67878501 + AluJb SINE Alu 137 312 0 324 158 0 0 chr11 82905055 82905112 -67878441 + GA-rich Low_complexity Low_complexity 3 59 0 1659 164 19 26 chr11 82906501 82906811 -67876742 + AluJo SINE Alu 5 312 0 208 119 48 0 chr11 82906779 82906821 -67876732 + (CCAA)n Simple_repeat Simple_repeat 4 47 0 181 225 25 0 chr11 82906853 82906893 -67876660 + L3 LINE CR1 1515 1555 -22 742 172 23 16 chr11 82906925 82907053 -67876500 - FLAM_C SINE Alu -4 129 1 219 206 19 19 chr11 82907247 82907301 -67876252 - MIR SINE MIR -59 149 101 225 302 31 0 chr11 82907598 82907694 -67875859 - MIR SINE MIR -77 131 33 590 163 16 38 chr11 82908227 82908411 -67875142 + GA-rich Low_complexity Low_complexity 1 180 0 254 323 8 39 chr11 82908611 82908738 -67874815 - L2 LINE L2 -457 2857 2735 195 236 209 0 chr11 82908767 82908877 -67874676 - MIR3 SINE MIR -15 193 61 1017 191 30 10 chr11 82909492 82909726 -67873827 + L1MD2 LINE L1 5792 6023 -219 725 232 29 35 chr11 82909787 82910097 -67873456 + L1MD2 LINE L1 5990 6346 -13 597 225 123 30 chr11 82910132 82910368 -67873185 - L1M4 LINE L1 -1313 4833 4576 40 0 0 0 chr11 82910388 82910428 -67873125 + AT_rich Low_complexity Low_complexity 1 40 0 5230 186 3 8 chr11 82910847 82911741 -67871812 + HERVL74 LTR ERVL 2438 3327 -2358 944 188 24 0 chr11 82911736 82911906 -67871647 + HERVL74 LTR ERVL 3479 3652 -2033 * 809 176 19 6 chr11 82911905 82912064 -67871489 + HERVL74 LTR ERVL 3913 4073 -1612 * 426 260 21 0 chr11 82912058 82912154 -67871399 + HERVL74 LTR ERVL 4592 4689 -996 * 277 318 82 0 chr11 82912159 82912244 -67871309 + HERVL74 LTR ERVL 4644 4735 -950 405 39 0 0 chr11 82912808 82912859 -67870694 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 231 192 0 0 chr11 82912955 82913028 -67870525 + (TA)n Simple_repeat Simple_repeat 2 74 0 324 274 21 11 chr11 82913028 82913123 -67870430 + L1MC4 LINE L1 6610 6705 -1337 240 180 33 0 chr11 82913124 82913185 -67870368 + (TA)n Simple_repeat Simple_repeat 2 64 0 336 48 0 0 chr11 82913185 82913227 -67870326 + (GA)n Simple_repeat Simple_repeat 2 43 0 332 179 9 0 chr11 82913275 82913387 -67870166 + (TA)n Simple_repeat Simple_repeat 2 114 0 225 94 0 0 chr11 82913386 82913418 -67870135 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 1256 153 5 42 chr11 82913515 82913731 -67869822 - AluJo SINE Alu -104 208 1 472 249 97 27 chr11 82914094 82914279 -67869274 + MIR SINE MIR 47 244 -18 206 278 48 63 chr11 82914336 82914462 -67869091 - MIR SINE MIR -65 143 20 457 271 8 8 chr11 82914830 82914952 -67868601 + MIR3 SINE MIR 38 159 -49 368 252 83 31 chr11 82915478 82915705 -67867848 + MIR3 SINE MIR 6 250 -12 1336 269 87 5 chr11 82916203 82916276 -67867277 - MER20B DNA MER1_type -55 728 662 718 215 113 36 chr11 82916276 82916471 -67867082 + MER63A DNA MER1_type 1 210 0 1336 269 87 5 chr11 82916471 82916844 -67866709 - MER20B DNA MER1_type -121 662 245 251 310 43 26 chr11 82916883 82916999 -67866554 - MER20B DNA MER1_type -665 118 1 1098 64 40 0 chr11 82917134 82917461 -67866092 + (TCCA)n Simple_repeat Simple_repeat 1 340 0 250 345 65 3 chr11 82917669 82917827 -67865726 + MIR3 SINE MIR 19 175 -33 197 259 125 25 chr11 82919615 82919775 -67863778 + MIR SINE MIR 8 180 -62 222 200 0 0 chr11 82920246 82920286 -67863267 + (ATGGTG)n Simple_repeat Simple_repeat 3 42 0 1376 91 0 91 chr11 82920366 82920576 -67862977 + AluSg/x SINE Alu 107 297 -15 265 218 59 59 chr11 82920615 82920716 -67862837 - MIR SINE MIR -69 139 39 1616 165 40 4 chr11 82920982 82921254 -67862299 - AluJo SINE Alu -30 282 1 279 292 6 77 chr11 82921543 82921641 -67861912 + MIR SINE MIR 57 140 -122 2075 117 0 60 chr11 82921641 82921958 -67861595 + AluSx SINE Alu 1 298 -14 279 292 6 77 chr11 82921958 82922027 -67861526 + MIR SINE MIR 140 212 -50 2138 114 0 56 chr11 82922045 82922369 -67861184 + AluSx SINE Alu 3 308 -4 995 299 49 63 chr11 82922421 82922990 -67860563 - MLT1K LTR MaLR -27 561 1 1587 209 57 59 chr11 82923382 82923875 -67859678 + MLT1D LTR MaLR 2 493 -12 234 293 76 19 chr11 82923967 82924124 -67859429 - MIR SINE MIR -74 188 23 199 250 60 0 chr11 82924129 82924213 -67859340 - L3 LINE CR1 -77 1500 1412 233 151 208 0 chr11 82924949 82925002 -67858551 - MIR SINE MIR -88 120 57 395 217 52 61 chr11 82925146 82925261 -67858292 - MIR SINE MIR -135 127 14 252 122 0 0 chr11 82926403 82926444 -67857109 - MIR SINE MIR -87 121 81 474 229 85 26 chr11 82926948 82927101 -67856452 + MIR SINE MIR 23 184 -78 209 308 13 0 chr11 82927211 82927289 -67856264 + MIR3 SINE MIR 98 176 -32 401 250 37 7 chr11 82927628 82927764 -67855789 + MIR SINE MIR 32 171 -91 745 141 15 52 chr11 82931577 82931712 -67851841 - FLAM_C SINE Alu -3 130 1 291 258 31 62 chr11 82931882 82931979 -67851574 - MIR SINE MIR -146 116 23 235 221 105 47 chr11 82932099 82932185 -67851368 - MIR3 SINE MIR -47 161 71 2352 92 0 7 chr11 82932254 82932548 -67851005 + AluSg SINE Alu 1 292 -18 579 175 35 49 chr11 82933435 82933578 -67849975 + MIR SINE MIR 108 248 -14 831 181 50 6 chr11 82935069 82935229 -67848324 - MER2 DNA MER2_type -25 320 154 2455 73 3 0 chr11 82935289 82935589 -67847964 + AluSp SINE Alu 2 302 -11 1409 149 66 4 chr11 82935589 82935831 -67847722 - MER2 DNA MER2_type -79 266 10 297 296 89 25 chr11 82935879 82936159 -67847394 + HAL1 LINE L1 1237 1534 -973 453 271 231 10 chr11 82936299 82936602 -67846951 + L1M4 LINE L1 2911 3280 -2866 842 299 77 8 chr11 82936654 82937050 -67846503 + L1M4 LINE L1 3530 3966 -2180 1760 179 0 10 chr11 82937050 82937352 -67846201 + AluJo SINE Alu 1 299 -13 842 299 77 8 chr11 82937352 82937436 -67846117 + L1M4 LINE L1 3966 4043 -2103 370 279 88 42 chr11 82937464 82937747 -67845806 + L1M4 LINE L1 4109 4404 -1742 420 286 93 48 chr11 82937999 82938082 -67845471 + L1M4 LINE L1 4581 4659 -1487 2067 98 11 24 chr11 82938082 82938369 -67845184 + AluSx SINE Alu 10 292 -20 420 286 93 48 chr11 82938369 82938704 -67844849 + L1M4 LINE L1 4659 5018 -1128 483 267 0 47 chr11 82940028 82940178 -67843375 + MIR3 SINE MIR 18 160 -48 1847 182 0 3 chr11 82941387 82941695 -67841858 + AluJb SINE Alu 1 307 -5 745 189 0 23 chr11 82941899 82942031 -67841522 - FLAM_A SINE Alu 0 133 5 1893 132 6 60 chr11 82942115 82942433 -67841120 - AluSx SINE Alu -11 301 1 372 234 135 27 chr11 82943127 82943238 -67840315 - MIR3 SINE MIR -7 201 79 2032 118 6 42 chr11 82943526 82943839 -67839714 + AluSx SINE Alu 1 302 -10 225 0 0 0 chr11 82943884 82943909 -67839644 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1630 169 4 11 chr11 82943921 82944194 -67839359 - AluJb SINE Alu -21 291 21 234 320 150 20 chr11 82944637 82944784 -67838769 - MIR3 SINE MIR -9 199 34 2465 57 7 0 chr11 82944929 82945225 -67838328 + AluY SINE Alu 1 298 -13 206 158 0 0 chr11 82945332 82945370 -67838183 + L2 LINE L2 3190 3227 -86 346 179 382 0 chr11 82945459 82945582 -67837971 - MIR SINE MIR -16 246 77 2536 75 3 0 chr11 82945595 82945903 -67837650 - AluSp SINE Alu -4 309 1 1996 142 0 0 chr11 82945961 82946250 -67837303 - AluSx SINE Alu -23 289 1 1611 240 111 40 chr11 82946829 82947794 -67835759 + L1ME3 LINE L1 4484 5520 -642 927 142 175 0 chr11 82947795 82947978 -67835575 + L1ME3 LINE L1 5746 5960 -210 1853 226 42 54 chr11 82947980 82948532 -67835021 + MER68 LTR ERV1 1 545 -17 336 241 12 0 chr11 82948555 82948638 -67834915 + L1ME3 LINE L1 5971 6054 -108 397 270 65 65 chr11 82948687 82948887 -67834666 + L1ME3A LINE L1 5946 6145 -25 1984 125 3 17 chr11 82948887 82949184 -67834369 - AluJb SINE Alu -13 299 7 24 0 0 0 chr11 82949214 82949238 -67834315 + AT_rich Low_complexity Low_complexity 1 24 0 1027 84 0 0 chr11 82949241 82949372 -67834181 + AluSc SINE Alu 173 303 -6 266 273 23 0 chr11 82949372 82949473 -67834080 + (TA)n Simple_repeat Simple_repeat 1 103 0 380 316 141 0 chr11 82949583 82949789 -67833764 + L2 LINE L2 2539 2773 -541 248 305 0 92 chr11 82949809 82949950 -67833603 + L2 LINE L2 2928 3055 -217 351 293 211 12 chr11 82950067 82950323 -67833230 + L2 LINE L2 1646 1952 -1362 2275 99 13 0 chr11 82950333 82950637 -67832916 - AluSq SINE Alu -5 308 1 791 144 0 50 chr11 82950641 82950780 -67832773 - FLAM_C SINE Alu -1 132 1 755 228 0 0 chr11 82950954 82951099 -67832454 - FRAM SINE Alu -30 146 2 22 0 0 0 chr11 82951112 82951134 -67832419 + AT_rich Low_complexity Low_complexity 1 22 0 1742 177 21 3 chr11 82951136 82951424 -67832129 + AluJb SINE Alu 1 293 -19 275 290 86 68 chr11 82951510 82951672 -67831881 + MIR SINE MIR 89 253 -9 1379 171 9 0 chr11 82951674 82951896 -67831657 + AluJb SINE Alu 85 308 -4 1709 167 10 20 chr11 82951960 82952259 -67831294 + AluJb SINE Alu 1 296 -16 3731 164 134 11 chr11 82952288 82953121 -67830432 - Charlie1 DNA MER1_type 0 2761 1826 844 182 122 0 chr11 82953124 82953305 -67830248 - Charlie1 DNA MER1_type -2520 241 39 1722 145 161 7 chr11 82953306 82953616 -67829937 + MLT1A1 LTR MaLR 1 358 -7 1518 146 68 31 chr11 82954437 82954758 -67828795 + L1MB4 LINE L1 5847 6179 -1 308 100 100 0 chr11 82954775 82954825 -67828728 + L1MB8 LINE L1 6112 6166 -12 414 335 65 9 chr11 82954854 82955084 -67828469 + L3 LINE CR1 1248 1490 -87 618 308 56 16 chr11 82955514 82955764 -67827789 + L2 LINE L2 2048 2307 -1007 3118 157 32 9 chr11 82955771 82956327 -67827226 - L1MB5 LINE L1 -9 6165 5597 1471 155 75 48 chr11 82956332 82956664 -67826889 - L1MB5 LINE L1 -737 5437 5099 1969 129 13 19 chr11 82956664 82956973 -67826580 + AluSx SINE Alu 1 307 -5 1471 155 75 48 chr11 82956973 82957112 -67826441 - L1MB5 LINE L1 -1075 5099 4965 2113 127 16 3 chr11 82957127 82957435 -67826118 - AluSx SINE Alu 0 312 1 325 197 311 8 chr11 82957437 82957559 -67825994 + L2 LINE L2 2301 2459 -855 566 152 30 10 chr11 82957560 82957659 -67825894 + AluJ/FLAM SINE Alu 2 102 -210 1101 240 141 30 chr11 82957665 82958405 -67825148 + L2 LINE L2 2446 3313 0 371 331 110 7 chr11 82958413 82958558 -67824995 + L2 LINE L2 3112 3271 -1 352 223 107 0 chr11 82958892 82958995 -67824558 - MIR3 SINE MIR -45 163 50 21 0 0 0 chr11 82959370 82959391 -67824162 + GC_rich Low_complexity Low_complexity 1 21 0 29 94 0 0 chr11 82959422 82959507 -67824046 + GC_rich Low_complexity Low_complexity 1 85 0 181 354 61 0 chr11 82961896 82961995 -67821558 - L2 LINE L2 -227 3045 2941 2373 108 0 0 chr11 82962029 82962334 -67821219 + AluSc SINE Alu 1 305 -4 2363 105 0 0 chr11 82962849 82963153 -67820400 - AluSx SINE Alu -8 304 1 1015 194 90 34 chr11 82965490 82965684 -67817869 - MER58B DNA MER1_type -2127 293 78 2239 91 28 0 chr11 82965684 82965969 -67817584 + AluSx SINE Alu 1 293 -19 1015 194 90 34 chr11 82965969 82966042 -67817511 - MER58B DNA MER1_type -2342 78 11 2165 123 0 7 chr11 82966169 82966469 -67817084 + AluJb SINE Alu 1 298 -14 398 247 21 0 chr11 82967092 82967189 -67816364 - L2 LINE L2 -1 3312 3214 977 236 294 4 chr11 82967429 82967882 -67815671 + L1ME4a LINE L1 5536 6119 -2 388 251 52 35 chr11 82968800 82968937 -67814616 + MIR SINE MIR 37 176 -67 333 200 109 91 chr11 82968940 82969084 -67814469 - L2 LINE L2 -1 3312 3163 2419 44 41 14 chr11 82969084 82969379 -67814174 + AluY SINE Alu 1 303 -8 333 200 109 91 chr11 82969379 82969409 -67814144 - L2 LINE L2 -150 3163 3135 243 321 0 64 chr11 82969380 82969489 -67814064 + MIR SINE MIR 147 248 -14 * 2474 96 0 0 chr11 82970202 82970505 -67813048 + AluSx SINE Alu 1 303 -9 327 295 25 49 chr11 82970960 82971082 -67812471 - MIR SINE MIR -74 134 16 22 0 0 0 chr11 82971682 82971704 -67811849 + AT_rich Low_complexity Low_complexity 1 22 0 5858 88 7 20 chr11 82972256 82972419 -67811134 - L1MA3 LINE L1 -2 6303 6139 234 0 0 0 chr11 82972419 82972445 -67811108 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2124 114 14 0 chr11 82972445 82972726 -67810827 - AluSx SINE Alu -27 285 1 5858 88 7 20 chr11 82972726 82973445 -67810108 - L1MA3 LINE L1 -164 6141 5432 267 362 87 0 chr11 82973494 82973632 -67809921 + L2 LINE L2 3122 3271 -1 1099 173 17 30 chr11 82973651 82973888 -67809665 - L1MB5 LINE L1 0 6174 5941 1449 167 21 49 chr11 82973888 82974217 -67809336 - L1MD3 LINE L1 -967 7028 6709 838 218 175 12 chr11 82974215 82974626 -67808927 - L1MEc LINE L1 -5372 1024 391 * 229 258 144 46 chr11 82974613 82974807 -67808746 - L1MEd LINE L1 -3658 2471 2259 * 1789 165 3 7 chr11 82974822 82975143 -67808410 - AluJb SINE Alu 0 322 3 2493 153 99 8 chr11 82975226 82975525 -67808028 - L1MB7 LINE L1 -16 6168 5805 2349 101 7 7 chr11 82975525 82975832 -67807721 - AluSc SINE Alu -2 307 1 2493 153 99 8 chr11 82975832 82976028 -67807525 - L1MB7 LINE L1 -379 5805 5628 1285 234 79 41 chr11 82976055 82976383 -67807170 + MER63B DNA MER1_type 1 350 -712 2189 135 3 3 chr11 82976383 82976694 -67806859 + AluSx SINE Alu 1 311 -1 1285 234 79 41 chr11 82976694 82976784 -67806769 + MER63B DNA MER1_type 350 435 -1 2138 119 6 28 chr11 82976824 82977142 -67806411 - AluSx SINE Alu -1 311 1 713 181 0 0 chr11 82977163 82977290 -67806263 - FLAM_C SINE Alu -6 127 1 339 288 98 21 chr11 82977343 82977623 -67805930 - L1MEd LINE L1 -4699 1611 1168 411 68 0 0 chr11 82977624 82977683 -67805870 + (TTTTA)n Simple_repeat Simple_repeat 3 61 0 2211 106 0 7 chr11 82977685 82977968 -67805585 - AluSx SINE Alu -28 284 4 1839 194 22 102 chr11 82978027 82978536 -67805017 + MLT2B1 LTR ERVL 3 466 -54 387 0 0 0 chr11 82978536 82978579 -67804974 + (CA)n Simple_repeat Simple_repeat 2 44 0 1839 194 22 102 chr11 82978579 82978620 -67804933 + MLT2B1 LTR ERVL 466 509 -11 2350 110 0 3 chr11 82978634 82978943 -67804610 - AluSq SINE Alu -5 308 1 2373 102 3 3 chr11 82978944 82979249 -67804304 - AluSx SINE Alu -7 305 1 463 287 65 108 chr11 82979260 82979571 -67803982 - L1MEd LINE L1 -4976 1143 820 804 168 0 0 chr11 82979571 82979702 -67803851 - FLAM_C SINE Alu -2 131 1 463 287 65 108 chr11 82979702 82980022 -67803531 - L1MEd LINE L1 -5299 820 488 2480 97 3 0 chr11 82980022 82980333 -67803220 + AluSq SINE Alu 2 313 0 463 287 65 108 chr11 82980333 82980783 -67802770 - L1MEd LINE L1 -5631 488 108 2339 117 0 0 chr11 82980800 82981108 -67802445 + AluSx SINE Alu 1 308 -4 980 308 46 60 chr11 82981160 82981729 -67801824 - MLT1K LTR MaLR -27 561 1 1570 211 51 53 chr11 82982121 82982614 -67800939 + MLT1D LTR MaLR 2 493 -12 277 299 76 19 chr11 82982706 82982863 -67800690 - MIR SINE MIR -74 188 23 214 250 60 0 chr11 82982868 82982952 -67800601 - L3 LINE CR1 -77 1500 1412 239 151 208 0 chr11 82983688 82983741 -67799812 - MIR SINE MIR -88 120 57 415 236 49 57 chr11 82983885 82984008 -67799545 - MIR SINE MIR -135 127 6 208 289 163 7 chr11 82984535 82984670 -67798883 - MER91B DNA MER1_type -22 168 13 255 122 0 0 chr11 82985142 82985183 -67798370 - MIR SINE MIR -87 121 81 507 229 85 26 chr11 82985687 82985840 -67797713 + MIR SINE MIR 23 184 -78 239 308 13 0 chr11 82985950 82986028 -67797525 + MIR3 SINE MIR 98 176 -32 429 257 37 7 chr11 82986367 82986503 -67797050 + MIR SINE MIR 32 171 -91 205 325 39 0 chr11 82987040 82987117 -67796436 - L3 LINE CR1 -559 1018 939 340 353 56 22 chr11 82987859 82988091 -67795462 - MIR SINE MIR 0 262 23 405 187 33 11 chr11 82990037 82990128 -67793425 + MSTD LTR MaLR 304 396 0 198 191 0 0 chr11 82990790 82990832 -67792721 + G-rich Low_complexity Low_complexity 3 44 0 1843 155 0 24 chr11 82991000 82991296 -67792257 + AluJb SINE Alu 1 289 -23 183 310 56 0 chr11 82991316 82991387 -67792166 + MIR SINE MIR 69 143 -65 210 229 0 0 chr11 82991612 82991660 -67791893 + (CCCTG)n Simple_repeat Simple_repeat 4 51 0 230 279 29 0 chr11 82991992 82992060 -67791493 + MIR SINE MIR 77 146 -62 322 329 177 0 chr11 82992122 82992286 -67791267 + MIR SINE MIR 1 193 -69 1338 178 69 34 chr11 82992305 82992654 -67790899 + MLT1A1 LTR MaLR 5 365 0 443 238 54 81 chr11 82993212 82993397 -67790156 - L2 LINE L2 -180 3092 2913 191 206 48 16 chr11 82993941 82994004 -67789549 + L2 LINE L2 2585 2649 -665 2266 96 10 0 chr11 82994045 82994337 -67789216 + AluSq SINE Alu 6 300 -13 211 226 178 7 chr11 82994481 82994627 -67788926 + L2 LINE L2 2836 3006 -266 256 289 22 0 chr11 82996389 82996479 -67787074 - MIR SINE MIR -63 145 54 431 214 127 0 chr11 82996844 82996970 -67786583 + L1ME3A LINE L1 5501 5642 -522 286 102 82 0 chr11 82996978 82997027 -67786526 + MER63 DNA MER1_type 1 53 -157 1610 76 0 0 chr11 82997040 82997237 -67786316 + AluSq SINE Alu 1 197 -116 913 71 0 0 chr11 82997240 82997352 -67786201 - AluY SINE Alu -13 298 187 604 169 17 0 chr11 82997353 82997471 -67786082 + AluSg/x SINE Alu 190 309 -1 734 227 0 57 chr11 82997472 82997601 -67785952 + MER63A DNA MER1_type 45 163 -1525 2246 101 0 3 chr11 82997601 82997887 -67785666 - AluSx SINE Alu -23 289 5 734 227 0 57 chr11 82997887 82997933 -67785620 + MER63A DNA MER1_type 163 210 0 863 269 4 8 chr11 82997950 82998188 -67785365 + L1ME3A LINE L1 5660 5896 -274 409 261 17 0 chr11 82998244 82998363 -67785190 + L1ME3A LINE L1 6045 6165 -5 362 206 0 0 chr11 82998569 82998637 -67784916 + MER53 DNA DNA 122 189 0 265 216 0 0 chr11 82998835 82998886 -67784667 - L2 LINE L2 0 3272 3222 344 276 71 86 chr11 82998922 82999259 -67784294 + L2 LINE L2 2934 3265 -7 180 125 0 0 chr11 83000281 83000313 -67783240 + (TCCA)n Simple_repeat Simple_repeat 3 34 0 281 359 71 18 chr11 83000377 83000547 -67783006 + MIR SINE MIR 51 229 -33 3029 208 82 80 chr11 83000549 83001127 -67782426 + MER69B DNA AcHobo 4 580 -1946 1757 150 7 53 chr11 83001127 83001427 -67782126 + AluJb SINE Alu 7 292 -20 3029 208 82 80 chr11 83001427 83001509 -67782044 + MER69B DNA AcHobo 580 660 -1866 1728 181 3 7 chr11 83001509 83001828 -67781725 + AluJb SINE Alu 1 312 0 3029 208 82 80 chr11 83001828 83001840 -67781713 + MER69B DNA AcHobo 660 670 -1856 2219 114 0 29 chr11 83001840 83002156 -67781397 + AluSx SINE Alu 6 312 0 3029 208 82 80 chr11 83002156 83002401 -67781152 + MER69B DNA AcHobo 670 924 -302 1478 99 9 50 chr11 83002406 83002627 -67780926 + AluSq SINE Alu 3 214 -99 349 145 0 0 chr11 83002627 83002689 -67780864 - MER69 DNA AcHobo -1983 543 482 2383 143 69 5 chr11 83002712 83003118 -67780435 + LTR47A LTR ERVL 21 452 0 1877 168 0 3 chr11 83003352 83003649 -67779904 + AluJo SINE Alu 5 300 -12 441 218 30 20 chr11 83003672 83003773 -67779780 - MIR SINE MIR -111 151 50 239 359 29 38 chr11 83004402 83004611 -67778942 + L3 LINE CR1 1300 1506 -71 183 239 22 0 chr11 83005140 83005186 -67778367 + MIR SINE MIR 99 145 -63 296 335 146 19 chr11 83005910 83006068 -67777485 + MIR SINE MIR 15 192 -70 2402 99 3 3 chr11 83006210 83006523 -67777030 - AluSp SINE Alu 0 313 1 724 249 29 0 chr11 83006789 83006962 -67776591 - MIR SINE MIR -57 205 28 2275 125 0 0 chr11 83007133 83007444 -67776109 - AluSp SINE Alu -2 311 1 348 303 8 33 chr11 83007674 83007796 -67775757 + MER5A DNA MER1_type 3 121 -68 222 282 136 19 chr11 83007863 83007966 -67775587 + MIR SINE MIR 89 203 -59 2297 116 0 0 chr11 83008030 83008331 -67775222 - AluSx SINE Alu -11 301 1 2346 102 7 0 chr11 83008395 83008688 -67774865 + AluSg SINE Alu 1 295 -15 249 250 88 0 chr11 83010057 83010125 -67773428 - MIR3 SINE MIR -23 185 112 276 306 0 0 chr11 83010494 83010579 -67772974 + MIR3 SINE MIR 118 202 -6 439 324 98 11 chr11 83010914 83011189 -67772364 + L3 LINE CR1 949 1247 -330 181 327 89 10 chr11 83011253 83011354 -67772199 - L3 LINE CR1 -93 1484 1376 2163 122 3 3 chr11 83011361 83011655 -67771898 + AluSx SINE Alu 1 294 -18 382 319 85 21 chr11 83011703 83011891 -67771662 - MIR SINE MIR -34 228 29 214 386 26 0 chr11 83011918 83012032 -67771521 + L2 LINE L2 2869 2985 -328 225 0 0 0 chr11 83012082 83012107 -67771446 + (CA)n Simple_repeat Simple_repeat 1 25 0 304 287 156 18 chr11 83012155 83012322 -67771231 + L3 LINE CR1 959 1148 -429 306 0 0 0 chr11 83012341 83012375 -67771178 + (CA)n Simple_repeat Simple_repeat 2 35 0 231 265 24 24 chr11 83012655 83012738 -67770815 - MIR3 SINE MIR -17 191 109 231 359 30 15 chr11 83013756 83013887 -67769666 - MIR3 SINE MIR -1 207 75 603 311 60 0 chr11 83015294 83015477 -67768076 + MIR SINE MIR 59 252 -10 1287 153 0 44 chr11 83016165 83016221 -67767332 + AluJo SINE Alu 91 148 -164 2312 87 28 0 chr11 83016221 83016509 -67767044 + AluY SINE Alu 1 296 -15 1287 153 0 44 chr11 83016509 83016680 -67766873 + AluJo SINE Alu 148 308 -4 270 379 37 12 chr11 83016883 83017044 -67766509 + MIR SINE MIR 79 243 -19 341 290 48 68 chr11 83017642 83017754 -67765799 + MIR SINE MIR 48 159 -103 2249 120 0 7 chr11 83017754 83018055 -67765498 + AluSx SINE Alu 2 300 -12 341 290 48 68 chr11 83018055 83018132 -67765421 + MIR SINE MIR 159 236 -26 894 238 111 10 chr11 83018767 83019065 -67764488 + LTR16A LTR ERVL 66 393 -57 338 298 125 10 chr11 83019176 83019280 -67764273 + L2 LINE L2 3181 3296 -17 1830 109 24 100 chr11 83019322 83019651 -67763902 - AluYb8 SINE Alu -14 304 1 352 300 207 19 chr11 83019845 83020459 -67763094 - L2 LINE L2 -373 2941 2213 428 183 29 0 chr11 83020555 83020692 -67762861 + (TGGA)n Simple_repeat Simple_repeat 1 141 0 231 327 58 0 chr11 83021028 83021132 -67762421 - MIR SINE MIR -114 148 39 354 45 0 0 chr11 83021761 83021805 -67761748 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 246 323 61 61 chr11 83021820 83022018 -67761535 - L2 LINE L2 -45 3227 3030 2195 129 3 0 chr11 83023320 83023614 -67759939 + AluSx SINE Alu 1 295 -17 2401 95 3 0 chr11 83023618 83023922 -67759631 + AluSg SINE Alu 1 305 -5 1881 158 37 0 chr11 83024387 83024684 -67758869 - AluJb SINE Alu -4 308 1 495 290 59 16 chr11 83025167 83025353 -67758200 + MIR SINE MIR 38 231 -31 323 349 30 0 chr11 83026039 83026171 -67757382 + MIR3 SINE MIR 70 205 -3 209 331 40 20 chr11 83026523 83026674 -67756879 + L2 LINE L2 2695 2848 -466 378 141 84 0 chr11 83026737 83026808 -67756745 + MADE1 DNA Mariner 1 77 -3 2410 98 0 0 chr11 83026816 83027113 -67756440 - AluSg SINE Alu -13 297 1 2045 130 10 0 chr11 83027180 83027473 -67756080 + AluSx SINE Alu 1 296 -16 185 341 24 79 chr11 83027581 83027707 -67755846 + L2 LINE L2 3076 3194 -78 336 252 98 24 chr11 83028467 83028592 -67754961 - MIR SINE MIR -56 152 21 232 300 223 28 chr11 83028995 83029242 -67754311 + L2 LINE L2 2813 3107 -165 383 252 57 16 chr11 83029862 83029985 -67753568 - MER5A DNA MER1_type -7 182 55 193 299 124 10 chr11 83030134 83030231 -67753322 + MIR SINE MIR 105 212 -50 181 222 0 0 chr11 83030538 83030574 -67752979 + MIR SINE MIR 44 79 -129 5052 74 21 0 chr11 83030583 83031260 -67752293 + LTR8 LTR ERV1 1 691 0 640 204 75 75 chr11 83031934 83032120 -67751433 + HAL1 LINE L1 209 394 -2113 585 216 270 17 chr11 83032160 83032456 -67751097 + HAL1 LINE L1 634 1004 -1503 1056 253 129 25 chr11 83032461 83032857 -67750696 + HAL1 LINE L1 1536 1972 -535 488 223 18 0 chr11 83032865 83032977 -67750576 + HAL1 LINE L1 2067 2180 -327 207 109 22 43 chr11 83033110 83033156 -67750397 + L2 LINE L2 3269 3313 0 204 0 26 53 chr11 83033955 83033993 -67749560 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 280 234 53 11 chr11 83034021 83034115 -67749438 + L1ME3A LINE L1 6068 6165 -5 1948 103 51 67 chr11 83034138 83034450 -67749103 + AluSg SINE Alu 1 307 -3 412 226 143 8 chr11 83035021 83035154 -67748399 - MIR3 SINE MIR -38 170 20 2463 81 0 3 chr11 83036013 83036310 -67747243 - AluSx SINE Alu -16 296 1 378 269 29 0 chr11 83036687 83036791 -67746762 + MIR SINE MIR 76 182 -80 617 291 66 49 chr11 83036884 83037128 -67746425 + MIR SINE MIR 1 248 -14 256 320 10 0 chr11 83038242 83038339 -67745214 + L2 LINE L2 3205 3302 -11 1968 145 3 42 chr11 83038545 83038709 -67744844 - AluJb SINE Alu -14 298 150 2416 64 20 7 chr11 83038709 83039007 -67744546 - AluY SINE Alu -9 302 1 1968 145 3 42 chr11 83039007 83039152 -67744401 - AluJb SINE Alu -162 150 1 303 276 35 110 chr11 83039215 83039249 -67744304 + L1MC/D LINE L1 5332 5367 -2441 1740 163 24 31 chr11 83039249 83039407 -67744146 - AluJb SINE Alu -20 292 134 243 0 0 0 chr11 83039407 83039434 -67744119 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2212 113 0 0 chr11 83039434 83039718 -67743835 - AluSq SINE Alu -29 284 1 1740 163 24 31 chr11 83039718 83039852 -67743701 - AluJb SINE Alu -176 136 1 303 276 35 110 chr11 83039852 83039962 -67743591 + L1MC/D LINE L1 5367 5465 -2343 375 162 29 0 chr11 83040046 83040114 -67743439 - MER58B DNA MER1_type 0 341 272 555 121 0 12 chr11 83040114 83040197 -67743356 - AluJ/FLAM SINE Alu -228 84 3 732 266 21 59 chr11 83040198 83040384 -67743169 - MER58B DNA MER1_type -60 281 89 1904 138 0 0 chr11 83040384 83040645 -67742908 + AluSx SINE Alu 9 269 -43 207 69 0 0 chr11 83040655 83040684 -67742869 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 732 266 21 59 chr11 83040684 83040775 -67742778 - MER58B DNA MER1_type -261 80 4 314 275 0 0 chr11 83040777 83040857 -67742696 + L1MC/D LINE L1 5710 5789 -2019 2030 116 54 0 chr11 83041208 83041485 -67742068 + AluSx SINE Alu 1 292 -20 232 264 28 57 chr11 83041540 83041646 -67741907 + MER103 DNA DNA 8 110 -56 7664 134 38 52 chr11 83041702 83043245 -67740308 + MSTA-int LTR MaLR 1 1580 0 2017 144 93 13 chr11 83043245 83043641 -67739912 + MSTA LTR MaLR 1 428 0 360 0 0 0 chr11 83043726 83043766 -67739787 + (CA)n Simple_repeat Simple_repeat 2 41 0 1748 160 32 42 chr11 83044699 83045011 -67738542 - AluJb SINE Alu -3 309 1 2215 91 4 0 chr11 83045658 83045934 -67737619 + AluSx SINE Alu 1 277 -35 182 176 47 129 chr11 83046100 83046185 -67737368 - L2 LINE L2 0 3313 3236 219 260 41 14 chr11 83046206 83046279 -67737274 + MIR SINE MIR 77 151 -111 858 112 0 0 chr11 83046322 83046447 -67737106 - FLAM_C SINE Alu -8 125 1 182 302 19 0 chr11 83047100 83047153 -67736400 - MIR SINE MIR -67 141 88 738 300 45 4 chr11 83047207 83047450 -67736103 - MIR SINE MIR 0 262 10 904 147 95 57 chr11 83047451 83047662 -67735891 - MER20 DNA MER1_type 0 219 1 305 267 67 58 chr11 83047800 83047920 -67735633 - MIR SINE MIR -114 148 28 286 324 52 7 chr11 83048407 83048543 -67735010 - MIR SINE MIR -62 200 59 234 313 73 10 chr11 83048717 83048813 -67734740 - MIR SINE MIR -89 119 18 1918 179 3 0 chr11 83049088 83049396 -67734157 + AluJb SINE Alu 1 309 -3 229 135 0 0 chr11 83049682 83049719 -67733834 + L2 LINE L2 3261 3297 -16 2345 101 13 3 chr11 83050333 83050641 -67732912 - AluSq SINE Alu -2 311 1 184 348 57 7 chr11 83050739 83050880 -67732673 + L2 LINE L2 2767 2914 -400 * 422 292 314 28 chr11 83050878 83051443 -67732110 - L2 LINE L2 -3 3310 2551 186 200 0 67 chr11 83051474 83051519 -67732034 - L2 LINE L2 -244 3028 2987 307 248 86 8 chr11 83051691 83051808 -67731745 - L1ME4a LINE L1 -27 6094 5969 454 284 216 5 chr11 83051863 83052053 -67731500 + MIR SINE MIR 33 262 0 275 269 170 18 chr11 83052427 83052598 -67730955 + MIR3 SINE MIR 9 205 -3 488 246 31 0 chr11 83053413 83053543 -67730010 - MER94 DNA DNA 0 134 1 460 255 174 0 chr11 83053803 83053964 -67729589 + MIR SINE MIR 52 240 -22 286 274 96 22 chr11 83055201 83055336 -67728217 + MIR SINE MIR 48 192 -70 280 239 14 14 chr11 83055946 83056017 -67727536 + L2 LINE L2 3236 3306 -7 814 223 276 16 chr11 83056250 83056649 -67726904 + MLT1H LTR MaLR 1 546 -3 275 151 280 21 chr11 83056651 83056744 -67726809 - MIR SINE MIR -67 195 79 743 126 22 59 chr11 83060443 83060578 -67722975 - FLAM_C SINE Alu -3 130 1 291 258 31 62 chr11 83060748 83060845 -67722708 - MIR SINE MIR -146 116 23 235 221 105 47 chr11 83060965 83061051 -67722502 - MIR3 SINE MIR -47 161 71 2103 99 22 19 chr11 83061120 83061432 -67722121 + AluSq SINE Alu 1 313 0 282 288 96 24 chr11 83061472 83061597 -67721956 + L2 LINE L2 3121 3254 -18 2187 121 0 7 chr11 83061863 83062170 -67721383 + AluSx SINE Alu 1 305 -7 2210 96 0 0 chr11 83062207 83062524 -67721029 + AluSg SINE Alu 1 317 0 448 235 146 81 chr11 83062879 83063126 -67720427 + MLT-int LTR MaLR 1472 1734 -1 180 0 0 0 chr11 83063305 83063325 -67720228 + (C)n Simple_repeat Simple_repeat 1 20 0 984 263 90 45 chr11 83063363 83063867 -67719686 + L1ME4a LINE L1 5593 6117 -4 232 340 35 66 chr11 83063936 83064133 -67719420 - L2 LINE L2 -97 3175 2985 196 322 133 0 chr11 83064660 83064750 -67718803 - L3 LINE CR1 -7 1570 1469 461 323 48 5 chr11 83064938 83065124 -67718429 - L2 LINE L2 0 3313 3120 277 330 35 0 chr11 83065124 83065239 -67718314 - L2 LINE L2 -318 2995 2877 193 373 0 0 chr11 83065294 83065353 -67718200 + L2 LINE L2 3008 3066 -206 212 306 106 0 chr11 83065476 83065561 -67717992 + L2 LINE L2 3167 3260 -12 238 314 75 72 chr11 83065633 83065749 -67717804 - MIR SINE MIR -13 249 135 1679 153 12 4 chr11 83065749 83066004 -67717549 + AluJo SINE Alu 1 257 -55 238 314 75 72 chr11 83066004 83066124 -67717429 - MIR SINE MIR -127 135 16 200 271 43 14 chr11 83067190 83067260 -67716293 - MIR3 SINE MIR -49 159 88 453 232 40 81 chr11 83067454 83067652 -67715901 + MIR SINE MIR 20 209 -53 384 307 88 95 chr11 83067881 83068291 -67715262 - L2 LINE L2 -6 3266 2860 482 269 6 51 chr11 83069188 83069344 -67714209 + MIR SINE MIR 47 195 -67 442 332 22 32 chr11 83069513 83069790 -67713763 - L1ME LINE L1 -312 5809 5536 700 218 62 33 chr11 83070412 83070623 -67712930 - HAL1 LINE L1 -13 2494 2278 22 56 0 0 chr11 83070623 83070659 -67712894 + AT_rich Low_complexity Low_complexity 1 36 0 500 250 12 18 chr11 83071319 83071483 -67712070 + HAL1 LINE L1 1977 2139 -368 451 137 27 0 chr11 83071759 83071832 -67711721 + MER3 DNA MER1_type 135 209 0 404 121 17 0 chr11 83071782 83071840 -67711713 - MER3 DNA MER1_type -111 98 40 * 461 304 96 19 chr11 83072049 83072309 -67711244 - LTR40b LTR ERVL -48 414 135 34 79 0 0 chr11 83072744 83072820 -67710733 + AT_rich Low_complexity Low_complexity 1 76 0 366 367 10 5 chr11 83072827 83073034 -67710519 + ERVL LTR ERVL 455 662 -5102 4510 148 34 14 chr11 83073873 83073897 -67709656 + L1MA4 LINE L1 5452 5474 -826 2017 150 0 10 chr11 83073897 83074210 -67709343 + AluJb SINE Alu 1 310 -2 4510 148 34 14 chr11 83074210 83075014 -67708539 + L1MA4 LINE L1 5474 6296 -4 352 160 25 118 chr11 83075296 83075342 -67708211 - MIR SINE MIR -117 145 96 1931 143 0 0 chr11 83075342 83075621 -67707932 + AluSx SINE Alu 1 279 -33 234 0 0 0 chr11 83075621 83075647 -67707906 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 352 160 25 118 chr11 83075647 83075718 -67707835 - MIR SINE MIR -164 98 38 248 328 82 0 chr11 83076146 83076280 -67707273 - MIR SINE MIR -45 217 73 633 250 91 26 chr11 83076283 83076334 -67707219 - MIR SINE MIR -2 260 214 1686 239 119 30 chr11 83076334 83076899 -67706654 + MLT1L LTR MaLR 1 615 0 633 250 91 26 chr11 83076899 83077079 -67706474 - MIR SINE MIR -48 214 14 2173 132 0 0 chr11 83077399 83077694 -67705859 + AluSx SINE Alu 1 295 -17 202 307 13 13 chr11 83077843 83077918 -67705635 + L3 LINE CR1 1478 1552 -25 180 0 0 0 chr11 83078375 83078395 -67705158 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2261 100 0 0 chr11 83078400 83078680 -67704873 - AluSx SINE Alu -31 281 2 220 331 57 45 chr11 83078768 83078925 -67704628 - L2 LINE L2 -534 2780 2622 849 273 218 0 chr11 83079801 83080182 -67703371 - Charlie8 DNA MER1_type -1953 464 1 418 354 62 0 chr11 83080991 83081135 -67702418 - L2 LINE L2 -4 3268 3116 272 324 36 9 chr11 83081208 83081319 -67702234 - MIR SINE MIR -138 124 11 986 218 150 55 chr11 83081395 83081437 -67702116 + MLT2E LTR ERVL 66 103 -525 2392 91 0 3 chr11 83081437 83081735 -67701818 + AluSg SINE Alu 1 297 -13 986 218 150 55 chr11 83081735 83082018 -67701535 + MLT2E LTR ERVL 103 422 -206 408 238 20 0 chr11 83082069 83082170 -67701383 + MLT2E LTR ERVL 518 620 -8 1856 172 13 0 chr11 83082189 83082492 -67701061 + AluJb SINE Alu 3 309 -3 554 183 22 22 chr11 83082507 83082712 -67700841 + GA-rich Low_complexity Low_complexity 1 205 0 199 292 0 31 chr11 83083703 83083799 -67699754 - MIR SINE MIR 0 262 170 699 190 0 0 chr11 83083800 83083957 -67699596 + FLAM_C SINE Alu 2 158 0 269 291 146 10 chr11 83083976 83084079 -67699474 - MIR3 SINE MIR -77 131 15 206 281 43 72 chr11 83085568 83085707 -67697846 + L2 LINE L2 2919 3053 -219 263 300 100 77 chr11 83085826 83085874 -67697679 + L2 LINE L2 3138 3183 -89 1758 149 0 77 chr11 83085874 83086058 -67697495 - AluJb SINE Alu -14 298 148 2061 106 21 3 chr11 83086058 83086341 -67697212 - AluSx SINE Alu -24 288 1 1758 149 0 77 chr11 83086341 83086479 -67697074 - AluJb SINE Alu -164 148 1 263 300 100 77 chr11 83086479 83086560 -67696993 + L2 LINE L2 3183 3270 -2 497 271 132 0 chr11 83086884 83087028 -67696525 + MIR3 SINE MIR 33 195 -13 198 103 0 0 chr11 83087250 83087279 -67696274 + (T)n Simple_repeat Simple_repeat 1 29 0 259 211 0 156 chr11 83087388 83087454 -67696099 - MLT2E LTR ERVL -471 157 113 2392 91 0 3 chr11 83087454 83087752 -67695801 - AluSg SINE Alu -13 297 1 259 211 0 156 chr11 83087752 83087794 -67695759 - MLT2E LTR ERVL -515 113 66 272 324 36 9 chr11 83087870 83087981 -67695572 + MIR SINE MIR 11 124 -138 418 354 62 0 chr11 83088054 83088198 -67695355 + L2 LINE L2 3116 3268 -4 849 273 218 0 chr11 83089007 83089388 -67694165 + Charlie8 DNA MER1_type 1 464 -1953 192 333 64 45 chr11 83090264 83090420 -67693133 + L2 LINE L2 2622 2780 -534 2261 100 0 0 chr11 83090508 83090788 -67692765 + AluSx SINE Alu 2 281 -31 180 0 0 0 chr11 83090793 83090813 -67692740 + (CAA)n Simple_repeat Simple_repeat 2 21 0 202 307 13 13 chr11 83091270 83091345 -67692208 - L3 LINE CR1 -25 1552 1478 1440 152 0 0 chr11 83091494 83091705 -67691848 - AluJb SINE Alu -17 295 85 275 290 86 68 chr11 83091707 83091869 -67691684 - MIR SINE MIR -9 253 89 1742 177 21 3 chr11 83091955 83092243 -67691310 - AluJb SINE Alu -19 293 1 22 0 0 0 chr11 83092245 83092267 -67691286 + AT_rich Low_complexity Low_complexity 1 22 0 755 228 0 0 chr11 83092280 83092425 -67691128 + FRAM SINE Alu 2 146 -30 791 144 0 50 chr11 83092599 83092738 -67690815 + FLAM_C SINE Alu 1 132 -1 2228 98 14 0 chr11 83092742 83093037 -67690516 + AluSq SINE Alu 1 299 -14 1070 153 116 16 chr11 83093200 83093389 -67690164 - AluJb SINE Alu -20 292 85 2395 71 0 0 chr11 83093397 83093719 -67689834 - AluSg SINE Alu 0 322 1 2742 164 24 52 chr11 83093740 83093941 -67689612 - MLT2B1 LTR ERVL 0 520 315 1735 186 0 16 chr11 83093941 83094248 -67689305 - AluJo SINE Alu -10 302 1 2742 164 24 52 chr11 83094248 83094581 -67688972 - MLT2B1 LTR ERVL -205 315 1 201 74 0 0 chr11 83094588 83094615 -67688938 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 789 118 0 0 chr11 83094616 83094726 -67688827 - HY1 scRNA scRNA -2 110 1 276 253 27 0 chr11 83094726 83094801 -67688752 - MIR SINE MIR -115 147 71 250 200 46 15 chr11 83095667 83095732 -67687821 - MLT1L LTR MaLR -328 287 221 1662 137 15 30 chr11 83096165 83096435 -67687118 - AluJo SINE Alu -46 266 1 1868 173 0 0 chr11 83096445 83096746 -67686807 - AluJb SINE Alu -11 301 1 727 243 92 36 chr11 83096965 83097200 -67686353 + MARNA DNA Mariner 214 472 -114 2307 84 0 0 chr11 83097200 83097524 -67686029 + AluY SINE Alu 1 324 0 727 243 92 36 chr11 83097524 83097592 -67685961 + MARNA DNA Mariner 472 535 -51 2375 98 3 0 chr11 83097773 83098079 -67685474 + AluSg SINE Alu 3 309 -1 2727 207 72 53 chr11 83098291 83098995 -67684558 - L1MDa LINE L1 -5806 734 17 566 198 152 2 chr11 83099031 83099261 -67684292 + L1ME1 LINE L1 5167 5436 -730 734 155 0 0 chr11 83099321 83099437 -67684116 + FAM SINE Alu 57 172 -13 2561 216 103 2 chr11 83099447 83100057 -67683496 + L1ME1 LINE L1 5439 6110 -56 2173 111 0 0 chr11 83100057 83100355 -67683198 + AluY SINE Alu 2 299 -12 333 231 65 0 chr11 83100509 83100617 -67682936 + MIR SINE MIR 82 196 -66 1352 210 104 34 chr11 83100807 83101164 -67682389 + MLT1F LTR MaLR 159 540 -2 2312 78 20 0 chr11 83101363 83101657 -67681896 - AluSp SINE Alu -13 300 1 730 263 84 5 chr11 83101787 83102000 -67681553 + MIR SINE MIR 33 262 0 2222 114 0 16 chr11 83102079 83102385 -67681168 - AluSx SINE Alu -11 301 1 341 281 180 7 chr11 83102673 83102812 -67680741 + MER5A DNA MER1_type 27 189 0 * 770 266 36 18 chr11 83102812 83102867 -67680686 + MIR SINE MIR 17 69 -193 2251 105 0 3 chr11 83102867 83103162 -67680391 - AluSx SINE Alu -8 304 11 770 266 36 18 chr11 83103162 83103326 -67680227 + MIR SINE MIR 69 240 -22 319 281 43 54 chr11 83103468 83103653 -67679900 + MIR SINE MIR 28 210 -52 198 103 0 0 chr11 83105783 83105812 -67677741 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 366 156 0 0 chr11 83106035 83106099 -67677454 + (TA)n Simple_repeat Simple_repeat 1 64 0 329 48 24 0 chr11 83106099 83106141 -67677412 - U6 snRNA snRNA -64 43 1 253 242 270 22 chr11 83106274 83106452 -67677101 - MIR SINE MIR -34 228 7 251 411 39 8 chr11 83106798 83106927 -67676626 + L2 LINE L2 3111 3243 -29 1110 144 30 20 chr11 83107341 83107543 -67676010 + MER105 DNA DNA 1 204 0 1929 174 0 3 chr11 83110222 83110527 -67673026 - AluJb SINE Alu -8 304 1 1991 152 0 10 chr11 83110530 83110832 -67672721 - AluJb SINE Alu -13 299 1 319 286 24 0 chr11 83111022 83111106 -67672447 - MIR SINE MIR -69 139 54 29 101 0 0 chr11 83111415 83111514 -67672039 + AT_rich Low_complexity Low_complexity 1 99 0 376 314 133 37 chr11 83112613 83112935 -67670618 - L3 LINE CR1 -5 1572 1220 187 265 133 12 chr11 83116461 83116544 -67667009 - L3b LINE CR1 -140 1443 1351 775 178 127 0 chr11 83116705 83116862 -67666691 + MIR SINE MIR 71 247 -15 714 248 62 41 chr11 83117756 83117998 -67665555 + L1ME3 LINE L1 5913 6159 -3 1299 182 58 4 chr11 83118007 83118265 -67665288 + L1MC1 LINE L1 6056 6327 -6 1360 182 45 16 chr11 83118296 83118411 -67665142 + AluJb SINE Alu 4 114 -198 234 0 0 0 chr11 83118411 83118437 -67665116 + (TA)n Simple_repeat Simple_repeat 1 26 0 1360 182 45 16 chr11 83118437 83118568 -67664985 + AluJb SINE Alu 114 257 -55 809 176 94 13 chr11 83118680 83118839 -67664714 + FRAM SINE Alu 1 168 -8 1163 257 86 52 chr11 83118841 83119339 -67664214 - MLT1K LTR MaLR -72 516 2 1047 220 59 45 chr11 83119396 83119889 -67663664 + MER39 LTR ERV1 5 539 -3 2332 97 3 0 chr11 83120149 83120448 -67663105 + AluSg SINE Alu 1 300 -10 1093 182 11 21 chr11 83120558 83120745 -67662808 - AluJo SINE Alu -42 270 86 243 299 89 57 chr11 83120778 83120935 -67662618 - L2 LINE L2 -4 3309 3148 584 247 70 72 chr11 83121352 83121699 -67661854 + L1ME3 LINE L1 5562 5909 -257 2110 118 30 7 chr11 83171754 83172059 -67611494 - AluSx SINE Alu 0 312 1 237 65 0 0 chr11 83173099 83173130 -67610423 + (T)n Simple_repeat Simple_repeat 1 31 0 1529 172 0 19 chr11 83173204 83173472 -67610081 + AluJo SINE Alu 42 304 -8 479 247 70 6 chr11 83173553 83173711 -67609842 + MIR SINE MIR 78 245 -17 194 415 0 0 chr11 83173889 83173954 -67609599 - MIR SINE MIR -108 100 36 1759 147 26 0 chr11 83174142 83174415 -67609138 + AluJb SINE Alu 1 280 -32 29 0 0 0 chr11 83174938 83174967 -67608586 + AT_rich Low_complexity Low_complexity 1 29 0 547 297 6 12 chr11 83177193 83177358 -67606195 - MLT1J LTR MaLR -32 479 316 180 111 0 0 chr11 83177976 83178003 -67605550 + (T)n Simple_repeat Simple_repeat 1 27 0 571 174 116 8 chr11 83178300 83178421 -67605132 - MER94 DNA DNA 0 134 1 277 315 117 9 chr11 83178848 83178959 -67604594 - L2 LINE L2 0 3272 3150 2387 92 0 3 chr11 83179555 83179860 -67603693 - AluSq SINE Alu -9 304 1 480 43 143 0 chr11 83179920 83179990 -67603563 + MADE1 DNA Mariner 1 80 0 2731 206 69 47 chr11 83180319 83181163 -67602390 - L1MD3 LINE L1 0 8036 7190 348 188 0 0 chr11 83181139 83181203 -67602350 - L1MC4 LINE L1 -872 7170 7107 * 227 348 50 68 chr11 83181507 83181668 -67601885 + L2 LINE L2 3115 3272 0 398 211 29 10 chr11 83182302 83182406 -67601147 + MER103 DNA DNA 60 165 -1 794 302 81 60 chr11 83182530 83183000 -67600553 + L3 LINE CR1 1091 1570 -7 201 211 26 0 chr11 83184310 83184348 -67599205 - MIR3 SINE MIR -49 159 121 354 279 143 19 chr11 83184535 83184696 -67598857 - MIR SINE MIR -50 212 32 301 327 68 25 chr11 83184936 83185098 -67598455 + L2 LINE L2 3104 3272 0 253 65 0 43 chr11 83185531 83185577 -67597976 + (TTA)n Simple_repeat Simple_repeat 2 45 0 479 262 177 12 chr11 83186092 83186256 -67597297 - MIR3 SINE MIR -2 206 16 227 136 0 68 chr11 83186268 83186327 -67597226 + (TTTTTG)n Simple_repeat Simple_repeat 6 60 0 204 250 0 0 chr11 83186995 83187035 -67596518 - MER91 DNA MER1_type -3 137 98 1962 137 0 7 chr11 83187644 83187959 -67595594 - AluJb SINE Alu 0 313 1 2160 128 0 0 chr11 83188074 83188372 -67595181 + AluSx SINE Alu 1 298 -14 285 375 107 32 chr11 83188399 83188839 -67594714 + L3 LINE CR1 903 1375 -202 31 44 0 0 chr11 83189678 83189723 -67593830 + AT_rich Low_complexity Low_complexity 1 45 0 1963 158 0 3 chr11 83190341 83190651 -67592902 + AluSx SINE Alu 1 309 -3 195 382 49 10 chr11 83190955 83191057 -67592496 - MIR SINE MIR -86 122 17 411 269 141 13 chr11 83191325 83191474 -67592079 - MIR SINE MIR -29 233 66 547 151 0 0 chr11 83191591 83191677 -67591876 - AluSq/x SINE Alu -179 133 48 2480 73 0 0 chr11 83191799 83192100 -67591453 + AluY SINE Alu 1 301 -10 308 181 39 29 chr11 83192105 83192360 -67591193 + AluJo SINE Alu 1 299 -3 1053 234 97 44 chr11 83192752 83193163 -67590390 + L1MC4a LINE L1 5308 5740 -2068 9521 124 63 29 chr11 83193195 83194082 -67589471 - Tigger1 DNA MER2_type -2 2416 1448 1900 142 23 23 chr11 83194082 83194392 -67589161 - AluJo SINE Alu -2 310 1 9521 124 63 29 chr11 83194392 83195106 -67588447 - Tigger1 DNA MER2_type -970 1448 760 2319 166 9 41 chr11 83195103 83195465 -67588088 - Tigger1 DNA MER2_type -1997 421 74 * 1959 109 4 4 chr11 83195465 83195739 -67587814 + AluSx SINE Alu 33 306 -6 2319 166 9 41 chr11 83195739 83195811 -67587742 - Tigger1 DNA MER2_type -2344 74 1 309 265 97 76 chr11 83195820 83196058 -67587495 + L1MC4a LINE L1 5817 6059 -1749 741 233 45 17 chr11 83196109 83196285 -67587268 + AluJo SINE Alu 113 293 -19 1483 200 19 0 chr11 83196305 83196575 -67586978 + AluJo SINE Alu 11 285 -27 1395 300 60 40 chr11 83196673 83197303 -67586250 - L1M4b LINE L1 -6203 656 14 385 351 52 15 chr11 83197311 83197579 -67585974 - L1 LINE L1 -2545 3601 3324 1948 121 21 7 chr11 83197642 83197950 -67585603 + AluSx SINE Alu 1 312 0 526 241 35 14 chr11 83198062 83198203 -67585350 - MIR SINE MIR -42 220 77 2002 98 5 12 chr11 83198466 83198873 -67584680 + MER75 DNA T2_type 1 504 0 309 314 12 0 chr11 83199777 83199863 -67583690 - L2 LINE L2 -1 3271 3185 * 382 288 90 68 chr11 83199860 83200138 -67583415 + L2 LINE L2 3029 3312 -1 344 194 128 130 chr11 83200314 83200506 -67583047 + MIR SINE MIR 72 262 0 355 268 61 0 chr11 83200710 83200792 -67582761 - MIR SINE MIR -155 107 21 1197 160 44 4 chr11 83200798 83201023 -67582530 - L1MB3 LINE L1 0 6183 5950 210 262 93 65 chr11 83201768 83201875 -67581678 + L3 LINE CR1 200 309 -1268 22 0 0 0 chr11 83203030 83203052 -67580501 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 83203248 83203269 -67580284 + AT_rich Low_complexity Low_complexity 1 21 0 1888 180 7 0 chr11 83204383 83204689 -67578864 - AluJb SINE Alu -4 308 1 266 242 92 17 chr11 83204757 83204877 -67578676 - L1ME4a LINE L1 -31 6090 5962 216 0 0 0 chr11 83204906 83204930 -67578623 + (TA)n Simple_repeat Simple_repeat 2 25 0 244 285 36 29 chr11 83205036 83205088 -67578465 - L1ME4a LINE L1 -348 5773 5723 243 0 0 0 chr11 83205088 83205115 -67578438 + (TG)n Simple_repeat Simple_repeat 2 28 0 244 285 36 29 chr11 83205115 83205199 -67578354 - L1ME4a LINE L1 -398 5723 5636 2171 120 0 0 chr11 83205297 83205596 -67577957 - AluSx SINE Alu -13 299 1 24 32 0 0 chr11 83206388 83206419 -67577134 + AT_rich Low_complexity Low_complexity 1 31 0 1776 168 7 16 chr11 83207708 83208011 -67575542 + AluJo SINE Alu 1 300 -12 679 186 4 28 chr11 83208013 83208278 -67575275 + AluJ SINE Alu 3 309 -3 279 0 0 0 chr11 83208580 83208611 -67574942 + (T)n Simple_repeat Simple_repeat 1 31 0 234 0 0 0 chr11 83208785 83208811 -67574742 + (A)n Simple_repeat Simple_repeat 1 26 0 2187 116 3 0 chr11 83208826 83209118 -67574435 + AluSx SINE Alu 1 293 -19 628 229 0 17 chr11 83209124 83209303 -67574250 + L1M4 LINE L1 2187 2362 -3784 2713 210 80 55 chr11 83209493 83210573 -67572980 + L1M4 LINE L1 2382 3488 -2658 663 211 108 4 chr11 83210681 83210693 -67572860 - L1MDa LINE L1 -3937 2603 2594 2491 71 0 0 chr11 83210693 83211002 -67572551 - AluY SINE Alu -2 309 1 663 211 108 4 chr11 83211002 83211240 -67572313 - L1MDa LINE L1 -3946 2594 2327 1325 129 12 102 chr11 83211252 83211507 -67572046 + AluJo SINE Alu 66 297 -15 1829 267 89 36 chr11 83211689 83212321 -67571232 + L1MB8 LINE L1 672 1336 -5523 1315 177 125 35 chr11 83212331 83212642 -67570911 + MER2 DNA MER2_type 3 341 -4 2306 248 37 24 chr11 83212646 83213643 -67569910 + L1MB8 LINE L1 1343 2347 -4612 251 312 0 0 chr11 83213628 83213721 -67569832 + L1MB8 LINE L1 4886 4978 -1979 * 25 0 0 0 chr11 83213780 83213805 -67569748 + AT_rich Low_complexity Low_complexity 1 25 0 2210 198 31 34 chr11 83213972 83214441 -67569112 + L1MB8 LINE L1 5504 5972 -985 2120 117 0 7 chr11 83214441 83214740 -67568813 - AluSx SINE Alu -15 297 1 2210 198 31 34 chr11 83214740 83214826 -67568727 + L1MB8 LINE L1 5972 6057 -900 261 168 33 7 chr11 83214821 83214893 -67568660 - L1MC/D LINE L1 -761 5572 5497 * 3595 205 49 22 chr11 83214928 83214943 -67568610 + L1MB8 LINE L1 6075 6088 -901 185 0 40 0 chr11 83214943 83214968 -67568585 + (TA)n Simple_repeat Simple_repeat 1 26 0 3595 205 49 22 chr11 83214968 83215846 -67567707 + L1MB8 LINE L1 6088 6989 0 449 37 0 0 chr11 83215857 83215911 -67567642 + AluY SINE Alu 2 55 -258 908 101 0 0 chr11 83215911 83216030 -67567523 - AluSg/x SINE Alu -73 239 121 404 249 139 5 chr11 83216348 83216521 -67567032 - MIR SINE MIR -29 233 30 219 154 0 0 chr11 83217157 83217196 -67566357 + T-rich Low_complexity Low_complexity 1 39 0 396 270 144 52 chr11 83217374 83217548 -67566005 - MIR SINE MIR -24 238 49 23 54 0 0 chr11 83219533 83219570 -67563983 + AT_rich Low_complexity Low_complexity 1 37 0 185 132 26 0 chr11 83219777 83219815 -67563738 + (TA)n Simple_repeat Simple_repeat 1 39 0 23 33 0 0 chr11 83221243 83221273 -67562280 + AT_rich Low_complexity Low_complexity 1 30 0 641 300 79 5 chr11 83221917 83222107 -67561446 + MIR SINE MIR 59 262 0 560 296 31 31 chr11 83222337 83222597 -67560956 + MIR SINE MIR 3 262 0 325 238 62 0 chr11 83222812 83222892 -67560661 - L2 LINE L2 0 3313 3229 549 303 19 6 chr11 83222924 83223086 -67560467 - MIR3 SINE MIR -6 202 39 800 293 116 53 chr11 83223306 83223685 -67559868 - L2 LINE L2 -4 3309 2907 228 330 19 0 chr11 83223688 83223794 -67559759 - L2 LINE L2 -513 2801 2694 547 203 68 131 chr11 83224062 83224284 -67559269 + MIR SINE MIR 49 256 -6 498 257 35 0 chr11 83226584 83226697 -67556856 - L2 LINE L2 0 3313 3197 3984 166 81 19 chr11 83227068 83227912 -67555641 - L1MB8 LINE L1 -10 6168 5273 366 341 67 14 chr11 83228101 83228291 -67555262 + MIR SINE MIR 3 206 -56 419 325 82 65 chr11 83229048 83229461 -67554092 - L2 LINE L2 -11 3261 2842 972 269 131 21 chr11 83230492 83230927 -67552626 - L2 LINE L2 0 3313 2831 720 194 83 27 chr11 83230934 83231026 -67552527 - L1M4c LINE L1 -2172 4472 4387 2242 116 0 7 chr11 83231026 83231336 -67552217 - AluSg SINE Alu 0 310 3 720 194 83 27 chr11 83231336 83231595 -67551958 - L1M4c LINE L1 -2257 4387 2488 1046 176 52 39 chr11 83231618 83231925 -67551628 - L1M4c LINE L1 -4105 2541 2231 420 256 181 96 chr11 83232010 83232730 -67550823 - L1M4c LINE L1 -5587 955 145 1139 140 53 29 chr11 83232730 83232937 -67550616 - L1MB3 LINE L1 -1 6182 5971 420 256 181 96 chr11 83232937 83233095 -67550458 - L1M4c LINE L1 -6397 145 2 1557 211 395 7 chr11 83233103 83233814 -67549739 - L2 LINE L2 -859 2455 1469 186 283 50 0 chr11 83234571 83234631 -67548922 + L2 LINE L2 3245 3307 -6 466 261 97 18 chr11 83235253 83235418 -67548135 - MER5A DNA MER1_type 0 189 12 188 246 140 0 chr11 83235583 83235640 -67547913 - MIR SINE MIR -75 187 123 778 223 157 1 chr11 83236021 83236414 -67547139 + LTR16C LTR ERVL 7 491 0 337 332 62 0 chr11 83236417 83236610 -67546943 + L2 LINE L2 1441 1645 -1669 2706 228 94 22 chr11 83236714 83237618 -67545935 + L1MEc LINE L1 35 1043 -5353 11002 110 14 3 chr11 83237644 83239198 -67544355 - Tigger1 DNA MER2_type -723 1695 125 10305 51 1 2 chr11 83239198 83241211 -67542342 + L1PA6 LINE L1 4135 6154 0 325 197 118 0 chr11 83241212 83241288 -67542265 + L1P1 LINE L1 5391 5475 -680 265 273 52 0 chr11 83241309 83241386 -67542167 + L2 LINE L2 3196 3276 -37 23 0 0 0 chr11 83241644 83241667 -67541886 + AT_rich Low_complexity Low_complexity 1 23 0 429 306 23 69 chr11 83241674 83241778 -67541775 - L1ME3A LINE L1 -26 6144 6037 1574 141 4 0 chr11 83241778 83242005 -67541548 + AluSx SINE Alu 3 230 -82 429 306 23 69 chr11 83242005 83242204 -67541349 - L1ME3A LINE L1 -133 6037 5855 218 32 32 0 chr11 83242218 83242249 -67541304 + (TA)n Simple_repeat Simple_repeat 2 33 0 11027 195 40 41 chr11 83242383 83243974 -67539579 - L1MC3 LINE L1 -20 8560 6969 1854 156 21 0 chr11 83243974 83244257 -67539296 + AluJb SINE Alu 1 289 -23 11027 195 40 41 chr11 83244257 83244677 -67538876 - L1MC3 LINE L1 -1611 6969 6550 2489 131 15 49 chr11 83244677 83245088 -67538465 + MLT2C1 LTR ERVL 1 397 0 11027 195 40 41 chr11 83245088 83245730 -67537823 - L1MC3 LINE L1 -2030 6550 5959 458 303 67 17 chr11 83245734 83246091 -67537462 - L1MEc LINE L1 -4104 2292 1918 1323 203 51 13 chr11 83246109 83246424 -67537129 - L1ME3A LINE L1 -5 6165 5839 4098 249 79 51 chr11 83246554 83246602 -67536951 - L1MC3 LINE L1 -3818 3123 3078 1598 149 62 24 chr11 83246602 83246890 -67536663 - AluJb SINE Alu -13 299 1 4098 249 79 51 chr11 83246890 83246901 -67536652 - L1MC3 LINE L1 -3863 3078 3069 1923 109 98 0 chr11 83246901 83247175 -67536378 - AluSx SINE Alu -11 301 1 4098 249 79 51 chr11 83247175 83249950 -67533603 - L1MC3 LINE L1 -3872 3069 18 860 174 0 8 chr11 83249980 83250112 -67533441 - FLAM_A SINE Alu -2 131 1 2115 101 0 64 chr11 83250125 83250452 -67533101 - AluSx SINE Alu -6 306 1 2227 100 27 0 chr11 83251035 83251334 -67532219 - AluSx SINE Alu -5 307 1 393 240 58 41 chr11 83251521 83251642 -67531911 - MIR SINE MIR -66 142 20 242 267 59 46 chr11 83251995 83252181 -67531372 + MIR SINE MIR 3 190 -62 305 324 56 0 chr11 83252294 83252402 -67531151 + MIR SINE MIR 39 152 -56 558 142 50 42 chr11 83252443 83252563 -67530990 - MER5A DNA MER1_type -63 126 6 202 211 0 0 chr11 83253026 83253064 -67530489 - MIR SINE MIR -6 256 219 525 294 22 61 chr11 83254230 83254458 -67529095 - MIR SINE MIR -7 255 37 894 160 33 22 chr11 83254631 83254812 -67528741 + MLT1B LTR MaLR 1 183 -207 245 158 35 35 chr11 83254809 83254866 -67528687 + MLT1B LTR MaLR 322 378 -12 * 180 0 0 0 chr11 83255255 83255275 -67528278 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1086 172 5 15 chr11 83255280 83255478 -67528075 - AluJo SINE Alu -30 282 87 497 278 70 22 chr11 83255479 83255749 -67527804 - L1M4 LINE L1 -960 5186 4904 5560 50 6 12 chr11 83256181 83256908 -67526645 - SVA Other Other -663 723 2 372 43 0 0 chr11 83256920 83256966 -67526587 + (GGGAGA)n Simple_repeat Simple_repeat 3 48 0 644 111 0 0 chr11 83256970 83257051 -67526502 - AluS SINE Alu -227 85 5 267 314 39 25 chr11 83257101 83257331 -67526222 - L1ME4a LINE L1 -158 5963 5727 279 232 146 0 chr11 83257367 83257449 -67526104 - L1ME4a LINE L1 -543 5578 5485 796 184 144 10 chr11 83257592 83257793 -67525760 - L1MC5 LINE L1 -41 7920 7693 2313 66 0 21 chr11 83257876 83258201 -67525352 + AluY SINE Alu 1 319 0 1685 148 21 0 chr11 83258209 83258493 -67525060 + L1MA8 LINE L1 5998 6287 -4 283 161 0 36 chr11 83258581 83258655 -67524898 - L1MC4 LINE L1 0 8042 7924 189 0 0 0 chr11 83258718 83258739 -67524814 + (T)n Simple_repeat Simple_repeat 1 21 0 270 136 0 0 chr11 83258971 83259015 -67524538 + (A)n Simple_repeat Simple_repeat 1 44 0 407 277 28 73 chr11 83259053 83259230 -67524323 + MIR SINE MIR 22 190 -72 1902 178 131 40 chr11 83259689 83260053 -67523500 + MLT1C LTR MaLR 1 411 -56 1997 128 24 3 chr11 83260053 83260342 -67523211 - AluSx SINE Alu -17 295 1 1902 178 131 40 chr11 83260342 83260405 -67523148 + MLT1C LTR MaLR 411 467 0 287 331 83 13 chr11 83260462 83260619 -67522934 + L2 LINE L2 3096 3263 -9 6595 73 12 10 chr11 83261938 83262645 -67520908 - L1PA10 LINE L1 -5 6163 5452 2121 120 0 0 chr11 83262645 83262928 -67520625 - AluSx SINE Alu -29 283 1 6595 73 12 10 chr11 83262928 83263118 -67520435 - L1PA10 LINE L1 -716 5452 5264 271 250 0 0 chr11 83263153 83263213 -67520340 + L1MC4 LINE L1 7403 7462 -580 3960 182 100 17 chr11 83263219 83264000 -67519553 + MER21B LTR ERV1 1 846 -17 1915 246 36 11 chr11 83264023 83264577 -67518976 + L1MC4 LINE L1 7457 8024 -18 6165 149 16 8 chr11 83264580 83265651 -67517902 + L1MC1 LINE L1 5254 6333 0 2539 198 16 2 chr11 83265671 83266170 -67517383 + L1ME1 LINE L1 5444 5949 -217 490 206 15 49 chr11 83266191 83266337 -67517216 + L1ME1 LINE L1 6030 6175 -3 962 261 22 62 chr11 83267198 83267450 -67516103 - L1ME4a LINE L1 -169 5952 5724 650 179 89 48 chr11 83267450 83267618 -67515935 + MER69A DNA AcHobo 3 177 0 962 261 22 62 chr11 83267618 83267813 -67515740 - L1ME4a LINE L1 -397 5724 5523 1913 176 70 30 chr11 83267926 83268398 -67515155 + Charlie4a DNA MER1_type 17 507 -1 227 296 61 10 chr11 83268453 83268551 -67515002 - L2 LINE L2 -20 3252 3150 871 224 13 61 chr11 83268569 83268797 -67514756 - Charlie8 DNA MER1_type -2200 217 1 302 299 136 36 chr11 83269145 83269382 -67514171 + L1M4 LINE L1 4254 4466 -1680 2199 117 7 0 chr11 83269382 83269701 -67513852 + AluSx SINE Alu 1 312 0 302 299 136 36 chr11 83269701 83270021 -67513532 + L1M4 LINE L1 4466 4867 -1279 874 118 0 22 chr11 83270129 83270265 -67513288 + FLAM_C SINE Alu 1 133 0 180 0 0 0 chr11 83270330 83270350 -67513203 + (T)n Simple_repeat Simple_repeat 1 20 0 2387 101 7 0 chr11 83270473 83270779 -67512774 - AluSx SINE Alu -4 308 1 1019 239 66 15 chr11 83270780 83271039 -67512514 + MLT1A1 LTR MaLR 93 364 -1 1306 235 61 32 chr11 83271044 83271423 -67512130 - MLT2C1 LTR ERVL -7 390 1 1673 197 58 3 chr11 83272251 83272596 -67510957 - MLT1A1 LTR MaLR -1 364 1 209 319 0 0 chr11 83272807 83272876 -67510677 + L2 LINE L2 3185 3253 -19 238 252 0 19 chr11 83272878 83272985 -67510568 + GA-rich Low_complexity Low_complexity 1 105 0 198 118 0 0 chr11 83272978 83273012 -67510541 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 * 246 324 74 0 chr11 83273149 83273257 -67510296 - MIR3 SINE MIR -27 181 66 270 221 67 0 chr11 83273861 83273965 -67509588 + (TCTCTG)n Simple_repeat Simple_repeat 2 112 0 673 284 59 0 chr11 83274477 83274681 -67508872 + MIR SINE MIR 35 250 -12 180 264 46 35 chr11 83274722 83274809 -67508744 + L2 LINE L2 2692 2779 -535 4274 146 28 18 chr11 83274810 83275528 -67508025 + MER50 LTR ERV1 1 725 -9 590 289 160 14 chr11 83275623 83276110 -67507443 + L2 LINE L2 2050 2607 -707 333 200 63 0 chr11 83276157 83276252 -67507301 + L1ME2 LINE L1 6063 6163 -1 2357 87 0 0 chr11 83276321 83276607 -67506946 - AluSx SINE Alu -14 298 13 260 267 0 0 chr11 83276643 83276703 -67506850 - MER112 DNA MER1_type 0 260 201 198 103 0 0 chr11 83276729 83276758 -67506795 + (TAAAA)n Simple_repeat Simple_repeat 4 32 0 1050 247 101 14 chr11 83276907 83277272 -67506281 + L2 LINE L2 2838 3234 -79 6463 131 137 119 chr11 83277272 83278940 -67504613 - pTR5 LTR ERV1 0 2438 741 300 303 45 15 chr11 83279621 83279753 -67503800 - MIR3 SINE MIR -8 200 65 598 136 15 61 chr11 83280874 83281006 -67502547 + L2 LINE L2 3188 3313 0 183 363 102 0 chr11 83281008 83281165 -67502388 - L2 LINE L2 -205 3067 2895 1671 197 7 17 chr11 83281319 83281614 -67501939 - AluJb SINE Alu -20 292 1 472 243 14 29 chr11 83281614 83281754 -67501799 + Charlie7 DNA MER1_type 69 206 -2406 853 179 115 164 chr11 83281803 83282044 -67501509 + Charlie7 DNA MER1_type 1428 1636 -976 1958 125 77 0 chr11 83282044 83282331 -67501222 - AluSx SINE Alu -2 310 2 853 179 115 164 chr11 83282331 83282558 -67500995 + Charlie7 DNA MER1_type 1636 1873 -739 311 120 0 0 chr11 83282559 83282609 -67500944 + Charlie7 DNA MER1_type 1977 2026 -586 717 83 0 0 chr11 83282609 83282705 -67500848 + AluY SINE Alu 206 301 -10 2223 123 0 10 chr11 83283447 83283755 -67499798 - AluSq SINE Alu -8 305 1 411 330 74 32 chr11 83283926 83284585 -67498968 + L1MC4a LINE L1 5254 5456 -835 24 0 0 0 chr11 83284772 83284796 -67498757 + AT_rich Low_complexity Low_complexity 1 24 0 198 274 254 50 chr11 83285089 83285290 -67498263 + L2 LINE L2 2988 3229 -84 260 301 0 0 chr11 83285338 83285421 -67498132 + (TTCA)n Simple_repeat Simple_repeat 2 84 0 333 294 93 16 chr11 83285668 83285862 -67497691 + L2 LINE L2 2876 3084 -188 395 261 45 45 chr11 83286076 83286210 -67497343 - MIR SINE MIR -109 153 20 230 315 38 19 chr11 83287081 83287268 -67496285 + MIR SINE MIR 2 247 -15 215 180 113 18 chr11 83289528 83289612 -67493941 + MIR SINE MIR 47 149 -59 309 297 50 10 chr11 83289964 83290065 -67493488 + MIR3 SINE MIR 82 186 -22 329 282 81 13 chr11 83290297 83290446 -67493107 + MIR SINE MIR 13 171 -91 395 287 61 0 chr11 83291008 83291123 -67492430 + L2 LINE L2 3141 3262 -10 234 259 120 56 chr11 83291236 83291344 -67492209 + MIR SINE MIR 17 131 -77 183 264 19 0 chr11 83293644 83293697 -67489856 - MIR SINE MIR -125 83 30 378 278 61 1 chr11 83294189 83294324 -67489229 - MIR3 SINE MIR -47 161 20 302 294 33 0 chr11 83295086 83295178 -67488375 - MIR3 SINE MIR -52 156 62 185 293 67 27 chr11 83295630 83295705 -67487848 - MIR3 SINE MIR -53 155 78 292 276 0 159 chr11 83296940 83297172 -67486381 - L2 LINE L2 -78 3194 3000 402 258 52 0 chr11 83297374 83297471 -67486082 + MIR SINE MIR 74 175 -87 246 239 15 15 chr11 83298568 83298635 -67484918 - L2 LINE L2 -1 3271 3205 342 194 115 4 chr11 83298762 83298898 -67484655 + MIR SINE MIR 55 208 -54 * 611 281 89 7 chr11 83298886 83299113 -67484440 - MIR SINE MIR -12 250 20 212 313 134 9 chr11 83299643 83299755 -67483798 + L2 LINE L2 2970 3095 -177 377 289 282 12 chr11 83299951 83300366 -67483187 + L2 LINE L2 2450 2976 -338 211 382 18 0 chr11 83300769 83300879 -67482674 + MIR3 SINE MIR 45 156 -52 378 0 0 0 chr11 83301116 83301158 -67482395 + (TG)n Simple_repeat Simple_repeat 1 42 0 216 67 0 0 chr11 83301158 83301188 -67482365 + (GA)n Simple_repeat Simple_repeat 2 31 0 572 236 48 34 chr11 83301253 83301449 -67482104 - MIR SINE MIR -46 216 20 409 311 67 0 chr11 83301481 83301616 -67481937 - MIR SINE MIR -112 150 7 365 306 45 0 chr11 83302055 83302166 -67481387 + MIR3 SINE MIR 41 156 -52 824 165 0 0 chr11 83302447 83302580 -67480973 - FLAM_C SINE Alu 0 133 1 2012 196 276 52 chr11 83302581 83303423 -67480130 - L1MC4 LINE L1 -192 7850 6821 850 190 39 50 chr11 83303411 83303742 -67479811 - L1MC5 LINE L1 -769 7192 6876 * 1511 249 50 57 chr11 83303799 83304513 -67479040 - L1M4 LINE L1 -1519 4627 3918 1703 205 3 25 chr11 83304513 83304830 -67478723 - AluJo SINE Alu -2 310 1 1511 249 50 57 chr11 83304830 83304921 -67478632 - L1M4 LINE L1 -2228 3918 3828 435 288 69 64 chr11 83304906 83305469 -67478084 - L1M4 LINE L1 -3328 2818 2253 * 196 309 44 37 chr11 83306538 83306674 -67476879 - L3 LINE CR1 -356 1221 1085 264 246 111 32 chr11 83306783 83306909 -67476644 - L2 LINE L2 0 3272 3137 280 262 136 12 chr11 83307188 83307355 -67476198 + MIR SINE MIR 58 244 -18 282 212 130 92 chr11 83307562 83307746 -67475807 - MIR3 SINE MIR -5 203 13 249 243 107 0 chr11 83308013 83308116 -67475437 + L2 LINE L2 3158 3271 -1 225 53 0 0 chr11 83308244 83308282 -67475271 + Alu SINE Alu 263 300 -1 663 206 7 0 chr11 83308518 83308654 -67474899 - L1MB4 LINE L1 -8 6172 6036 3310 130 78 2 chr11 83310660 83311241 -67472312 + L1P LINE L1 3867 4497 -1649 2483 87 10 0 chr11 83311241 83311550 -67472003 + AluSx SINE Alu 1 312 0 3310 130 78 2 chr11 83311550 83311567 -67471986 + L1P LINE L1 4497 4511 -1635 288 130 0 0 chr11 83311764 83311810 -67471743 + (A)n Simple_repeat Simple_repeat 1 46 0 6168 80 33 0 chr11 83311819 83313480 -67470073 + L1PA11 LINE L1 4483 6172 -2 182 261 54 98 chr11 83313480 83313563 -67469990 - MER5B DNA MER1_type -55 123 43 2347 92 3 3 chr11 83313579 83313882 -67469671 - AluSp SINE Alu -10 303 1 1732 230 52 2 chr11 83314026 83314469 -67469084 + MLT1C LTR MaLR 1 390 0 233 311 200 0 chr11 83314622 83314687 -67468866 - L2 LINE L2 -1 3312 3261 279 79 0 0 chr11 83314687 83314725 -67468828 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 233 311 200 0 chr11 83314725 83314894 -67468659 - L2 LINE L2 -52 3261 3031 217 209 0 0 chr11 83315467 83315510 -67468043 + MIR SINE MIR 108 150 -112 232 315 126 18 chr11 83316015 83316126 -67467427 + MIR SINE MIR 80 202 -60 1484 196 48 6 chr11 83316235 83316546 -67467007 + MER33 DNA MER1_type 1 324 0 511 302 78 10 chr11 83316978 83317183 -67466370 + MIR SINE MIR 20 238 -24 323 247 154 15 chr11 83317371 83317508 -67466045 - MIR3 SINE MIR -51 157 1 881 306 74 16 chr11 83317643 83318009 -67465544 - LTR16C LTR ERVL -15 476 90 252 133 26 80 chr11 83318189 83318302 -67465251 + (TTATA)n Simple_repeat Simple_repeat 3 109 0 243 0 0 0 chr11 83318314 83318341 -67465212 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 252 0 0 0 chr11 83318340 83318368 -67465185 + (TA)n Simple_repeat Simple_repeat 1 28 0 429 260 82 0 chr11 83318368 83318514 -67465039 + L1ME4a LINE L1 5724 5881 -240 562 176 10 0 chr11 83318548 83318650 -67464903 + MLT1A1 LTR MaLR 1 103 -262 207 0 0 0 chr11 83318650 83318673 -67464880 + (T)n Simple_repeat Simple_repeat 1 23 0 360 194 10 39 chr11 83318908 83319011 -67464542 + AluSp/q SINE Alu 203 302 -1 * 1054 234 126 41 chr11 83318997 83319539 -67464014 + Charlie7 DNA MER1_type 2003 2590 -22 183 290 68 65 chr11 83319745 83319993 -67463560 - L2 LINE L2 -724 2590 2342 441 0 0 0 chr11 83321199 83321248 -67462305 + (CA)n Simple_repeat Simple_repeat 2 50 0 310 253 172 0 chr11 83322074 83322173 -67461380 - MIR SINE MIR -123 139 24 296 207 36 126 chr11 83322577 83322688 -67460865 - MIR SINE MIR -66 196 96 213 269 60 0 chr11 83322954 83323021 -67460532 - MIR SINE MIR -179 83 13 * 378 265 37 52 chr11 83322965 83323101 -67460452 + MIR SINE MIR 20 153 -55 230 265 12 48 chr11 83323694 83323777 -67459776 - MIR SINE MIR -171 91 12 * 277 364 39 0 chr11 83323773 83323902 -67459651 - L2 LINE L2 0 3272 3139 695 283 122 0 chr11 83323908 83324138 -67459415 - MIR SINE MIR 0 262 5 1874 166 42 91 chr11 83324283 83324949 -67458604 + L1M4 LINE L1 4838 5452 -732 5000 23 4 0 chr11 83324950 83325508 -67458045 + SVA Other Other 827 1386 0 782 200 40 10 chr11 83325525 83325725 -67457828 + HAL1 LINE L1 1658 1863 -644 624 157 10 0 chr11 83325725 83325827 -67457726 + AluJb SINE Alu 191 293 -19 542 325 68 37 chr11 83325828 83326123 -67457430 + HAL1 LINE L1 1855 2158 -349 3793 151 43 35 chr11 83326124 83326874 -67456679 + L1MB8 LINE L1 5418 6173 -5 251 299 39 92 chr11 83326934 83327141 -67456412 - L2 LINE L2 -339 2975 2780 244 276 57 31 chr11 83327331 83327447 -67456106 + MIR SINE MIR 22 144 -64 302 252 47 47 chr11 83327892 83327999 -67455554 - MIR3 SINE MIR -36 172 66 399 308 87 40 chr11 83328593 83328915 -67454638 + L2 LINE L2 2640 2976 -338 239 311 43 24 chr11 83329314 83329454 -67454099 - MIR SINE MIR -47 161 15 658 241 112 5 chr11 83329857 83330044 -67453509 + MIR SINE MIR 36 242 -20 287 271 98 15 chr11 83330073 83330206 -67453347 + L2 LINE L2 3116 3259 -13 397 269 216 0 chr11 83331091 83331258 -67452295 - MIR SINE MIR -12 250 48 1358 275 137 48 chr11 83331378 83331924 -67451629 - MLT1G1 LTR MaLR 0 595 1 429 350 44 9 chr11 83332074 83332300 -67451253 - MIR SINE MIR -16 246 13 323 337 124 40 chr11 83332345 83332547 -67451006 + MIR SINE MIR 13 231 -31 328 122 0 0 chr11 83332847 83332896 -67450657 + MIR SINE MIR 106 154 -108 235 338 12 0 chr11 83332898 83332978 -67450575 - MIR SINE MIR 0 262 182 233 333 0 0 chr11 83333550 83333640 -67449913 + (CA)n Simple_repeat Simple_repeat 1 90 0 187 275 14 0 chr11 83334938 83335007 -67448546 + MIR SINE MIR 71 140 -68 370 240 41 8 chr11 83335479 83335600 -67447953 - MIR SINE MIR -61 147 23 725 215 104 36 chr11 83336245 83336433 -67447120 - L1MC4 LINE L1 -1 8041 7867 691 202 0 8 chr11 83336433 83336557 -67446996 + FLAM_C SINE Alu 2 124 -9 725 215 104 36 chr11 83336557 83336669 -67446884 - L1MC4 LINE L1 -175 7867 7609 441 125 0 0 chr11 83336748 83336812 -67446741 + AluJ/FLAM SINE Alu 26 89 -223 2506 234 70 90 chr11 83336828 83336991 -67446562 - L1MC5 LINE L1 -345 7616 7451 1930 139 0 17 chr11 83336991 83337293 -67446260 - AluJb SINE Alu -15 297 1 1496 150 7 51 chr11 83337298 83337592 -67445961 - AluJb SINE Alu -5 307 27 2506 234 70 90 chr11 83337592 83339294 -67444259 - L1MC5 LINE L1 -514 7447 5786 2112 97 10 10 chr11 83339294 83339594 -67443959 - AluSg SINE Alu -10 300 1 2506 234 70 90 chr11 83339594 83340001 -67443552 - L1MC5 LINE L1 -2175 5786 5373 217 234 0 0 chr11 83340004 83340051 -67443502 + L2 LINE L2 3188 3234 -38 205 340 21 31 chr11 83340092 83340189 -67443364 - MIR SINE MIR -71 137 42 436 320 20 13 chr11 83340209 83340359 -67443194 - L1ME4a LINE L1 -2 6119 5969 683 259 109 18 chr11 83340372 83340646 -67442907 - L1ME4a LINE L1 -200 5921 5623 186 208 42 0 chr11 83341113 83341161 -67442392 - L2 LINE L2 -219 3053 3004 318 194 172 11 chr11 83341489 83341582 -67441971 + MIR SINE MIR 30 137 -71 296 297 33 0 chr11 83342568 83342659 -67440894 - MIR SINE MIR -112 150 57 227 196 39 0 chr11 83343085 83343136 -67440417 - MIR SINE MIR -74 134 82 183 375 0 0 chr11 83343615 83343695 -67439858 - L2 LINE L2 -10 3262 3183 254 298 121 1 chr11 83343881 83343990 -67439563 - MIR SINE MIR -63 145 33 324 364 51 0 chr11 83344776 83344952 -67438601 + L2 LINE L2 2553 2737 -577 635 300 67 14 chr11 83345126 83345409 -67438144 - LTR16C LTR ERVL 0 491 194 1979 136 6 19 chr11 83345680 83345996 -67437557 + AluSx SINE Alu 1 312 0 365 221 67 29 chr11 83346613 83346717 -67436836 - MIR SINE MIR -106 156 49 264 279 85 60 chr11 83347131 83347332 -67436221 - L2 LINE L2 -90 3182 2977 264 271 43 0 chr11 83347478 83347548 -67436005 + MIR SINE MIR 118 190 -72 316 331 86 7 chr11 83348122 83348261 -67435292 + MIR SINE MIR 65 214 -48 224 312 40 48 chr11 83348314 83348439 -67435114 - L2 LINE L2 -69 3203 3080 234 265 402 0 chr11 83348503 83348605 -67434948 - L3 LINE CR1 -24 1553 1411 268 204 0 0 chr11 83348857 83348911 -67434642 + MIR SINE MIR 81 134 -128 345 230 60 10 chr11 83349120 83349220 -67434333 - MIR SINE MIR -87 121 17 286 390 58 0 chr11 83349521 83349693 -67433860 - MIR SINE MIR -66 196 15 845 204 44 0 chr11 83350478 83350659 -67432894 - MER5A DNA MER1_type 0 189 1 181 305 122 0 chr11 83350742 83350824 -67432729 + MIR SINE MIR 116 207 -55 364 264 121 33 chr11 83350890 83350964 -67432589 - MIR SINE MIR -32 230 164 234 0 0 0 chr11 83350964 83350990 -67432563 + (TTA)n Simple_repeat Simple_repeat 1 26 0 364 264 121 33 chr11 83350990 83351097 -67432456 - MIR SINE MIR -98 164 33 267 274 8 86 chr11 83351229 83351346 -67432207 + MIR3 SINE MIR 6 113 -95 268 316 0 13 chr11 83353593 83353669 -67429884 + L2 LINE L2 2677 2751 -563 320 167 14 0 chr11 83353824 83353896 -67429657 + CT-rich Low_complexity Low_complexity 4 76 0 205 306 104 8 chr11 83354399 83354523 -67429030 + MIR SINE MIR 43 189 -73 181 138 0 0 chr11 83356449 83356478 -67427075 + L2 LINE L2 3230 3258 -14 256 273 56 97 chr11 83356660 83356927 -67426626 - L2 LINE L2 -48 3224 2969 299 336 7 21 chr11 83357318 83357458 -67426095 - L2 LINE L2 -201 3071 2934 266 357 101 0 chr11 83358102 83358231 -67425322 + MIR SINE MIR 96 237 -25 1892 144 87 20 chr11 83358405 83358587 -67424966 + THE1C LTR MaLR 3 171 -204 252 0 0 0 chr11 83358587 83358615 -67424938 + (TC)n Simple_repeat Simple_repeat 1 28 0 1892 144 87 20 chr11 83358615 83358779 -67424774 + THE1C LTR MaLR 171 372 -3 337 319 18 6 chr11 83359130 83359296 -67424257 + (CA)n Simple_repeat Simple_repeat 1 168 0 1596 229 28 8 chr11 83359602 83359960 -67423593 - MLT1A1 LTR MaLR 0 365 1 290 258 15 0 chr11 83360075 83360141 -67423412 - MIR3 SINE MIR -32 176 110 331 278 104 9 chr11 83360359 83360474 -67423079 - MIR SINE MIR -70 192 67 294 29 0 0 chr11 83360535 83360570 -67422983 + (CA)n Simple_repeat Simple_repeat 2 36 0 204 40 0 0 chr11 83360852 83360877 -67422676 + (T)n Simple_repeat Simple_repeat 1 25 0 184 237 0 0 chr11 83361095 83361133 -67422420 - L2 LINE L2 -25 3247 3210 205 324 14 0 chr11 83361235 83361306 -67422247 + MIR SINE MIR 53 124 -84 206 255 0 0 chr11 83361915 83361962 -67421591 - MIR SINE MIR -78 130 84 414 88 0 0 chr11 83362672 83362740 -67420813 + (TG)n Simple_repeat Simple_repeat 1 68 0 420 299 166 33 chr11 83363338 83363662 -67419891 - L2 LINE L2 -233 3039 2759 2087 119 3 0 chr11 83363662 83363964 -67419589 - AluSx SINE Alu -9 303 1 420 299 166 33 chr11 83363964 83364804 -67418749 - L2 LINE L2 -513 2759 1712 2352 98 0 19 chr11 83366158 83366473 -67417080 - AluSq SINE Alu -4 309 1 300 175 0 0 chr11 83366687 83366744 -67416809 + L1ME4a LINE L1 6062 6118 -3 458 197 225 14 chr11 83366960 83367099 -67416454 + MIR SINE MIR 22 198 -64 1851 137 0 11 chr11 83367122 83367385 -67416168 + AluSx SINE Alu 1 260 -52 202 139 0 28 chr11 83367385 83367421 -67416132 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 282 259 47 0 chr11 83367691 83367861 -67415692 + C-rich Low_complexity Low_complexity 2 179 0 329 236 48 0 chr11 83367877 83368042 -67415511 + C-rich Low_complexity Low_complexity 1 173 0 288 305 175 6 chr11 83368707 83368864 -67414689 + MIR SINE MIR 20 203 -59 487 275 23 8 chr11 83369799 83369930 -67413623 - MIR SINE MIR -60 148 16 276 79 0 0 chr11 83370004 83370042 -67413511 + MADE1 DNA Mariner 1 38 -42 258 105 0 0 chr11 83370046 83370084 -67413469 + (T)n Simple_repeat Simple_repeat 1 38 0 1612 101 0 0 chr11 83370110 83370309 -67413244 + AluY SINE Alu 3 201 -110 519 289 188 14 chr11 83370768 83371125 -67412428 - L2 LINE L2 -33 3239 2821 2199 126 0 0 chr11 83371327 83371628 -67411925 - AluSx SINE Alu -11 301 1 235 327 159 9 chr11 83372389 83372496 -67411057 + MIR SINE MIR 20 142 -120 202 267 204 53 chr11 83372588 83372728 -67410825 - L3 LINE CR1 -12 1565 1448 1040 45 8 0 chr11 83372728 83372862 -67410691 + (TTTC)n Simple_repeat Simple_repeat 2 136 0 2036 106 0 0 chr11 83372870 83373134 -67410419 - AluSx SINE Alu -48 264 1 202 267 204 53 chr11 83373134 83373209 -67410344 - L3 LINE CR1 -134 1443 1307 200 286 0 39 chr11 83373217 83373294 -67410259 - L2 LINE L2 -13 3259 3186 190 329 98 34 chr11 83373751 83373985 -67409568 + L2 LINE L2 2839 3087 -185 700 259 94 0 chr11 83374243 83374467 -67409086 - MIR SINE MIR -10 252 8 501 275 54 7 chr11 83374946 83375095 -67408458 + MIR SINE MIR 51 206 -56 264 292 97 0 chr11 83375235 83375348 -67408205 - MIR SINE MIR -75 187 64 359 244 81 8 chr11 83376016 83376139 -67407414 + MIR SINE MIR 2 133 -129 246 281 31 0 chr11 83376137 83376201 -67407352 - L2 LINE L2 -2 3270 3205 * 596 319 38 17 chr11 83376559 83376794 -67406759 + MIR SINE MIR 23 262 0 345 270 11 0 chr11 83377238 83377345 -67406208 - MIR SINE MIR -68 140 45 336 308 140 41 chr11 83377386 83377801 -67405752 + L2 LINE L2 2817 3272 0 1641 246 102 4 chr11 83377826 83378326 -67405227 + MLT1H LTR MaLR 1 549 0 233 259 0 0 chr11 83378868 83378922 -67404631 + L2 LINE L2 3254 3307 -6 802 146 0 0 chr11 83378922 83379045 -67404508 + FLAM_C SINE Alu 2 124 -9 244 304 0 0 chr11 83379145 83379214 -67404339 - L2 LINE L2 -4 3268 3200 186 43 0 0 chr11 83379747 83379770 -67403783 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 747 183 17 0 chr11 83379772 83379947 -67403606 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 314 98 20 0 chr11 83380538 83380589 -67402964 + (TG)n Simple_repeat Simple_repeat 2 53 0 288 319 85 0 chr11 83380790 83380884 -67402669 - MIR SINE MIR -65 143 42 678 97 0 0 chr11 83381033 83381126 -67402427 - AluSp/q SINE Alu -14 299 207 281 300 8 31 chr11 83381219 83381349 -67402204 - MIR SINE MIR -66 196 70 205 269 118 32 chr11 83381611 83381704 -67401849 + MIR SINE MIR 49 149 -59 392 342 47 5 chr11 83382189 83382382 -67401171 + MIR SINE MIR 37 237 -25 361 275 21 56 chr11 83382933 83383075 -67400478 + MIR3 SINE MIR 9 145 -63 225 132 0 0 chr11 83383088 83383126 -67400427 + (T)n Simple_repeat Simple_repeat 1 38 0 998 120 120 0 chr11 83383127 83383277 -67400276 - AluSp SINE Alu -68 245 78 355 248 6 0 chr11 83383786 83383887 -67399666 + MIR SINE MIR 97 197 -63 274 265 110 52 chr11 83384024 83384160 -67399393 - MIR3 SINE MIR -52 156 13 198 267 0 0 chr11 83384918 83384963 -67398590 - L2 LINE L2 -6 3307 3263 * 467 296 89 0 chr11 83384929 83385108 -67398445 - MIR SINE MIR -11 251 57 346 274 11 0 chr11 83385904 83385999 -67397554 - MIR SINE MIR -68 140 45 3746 193 20 77 chr11 83386166 83387191 -67396362 + LTR5 LTR ERVK 1 967 -2 189 284 0 60 chr11 83387566 83387633 -67395920 - MIR SINE MIR -60 148 86 448 175 29 15 chr11 83388397 83388534 -67395019 + (TGGA)n Simple_repeat Simple_repeat 1 139 0 221 180 20 20 chr11 83388540 83388590 -67394963 + (TGGG)n Simple_repeat Simple_repeat 1 50 0 6973 111 9 5 chr11 83388737 83389852 -67393701 + L1P LINE L1 1097 2216 -3930 233 284 0 30 chr11 83390288 83390355 -67393198 - 7SK RNA RNA -128 65 1 315 255 138 25 chr11 83391145 83391341 -67392212 + L1ME LINE L1 5433 5650 -514 256 296 123 15 chr11 83391834 83391955 -67391598 + MIR SINE MIR 21 154 -87 1711 149 13 55 chr11 83391963 83392271 -67391282 + AluJb SINE Alu 1 295 -17 2402 96 3 0 chr11 83392349 83392651 -67390902 + AluSx SINE Alu 1 303 -9 1567 165 63 15 chr11 83392651 83392974 -67390579 + Tigger6 DNA MER2_type 1256 1597 0 529 294 109 9 chr11 83393354 83393565 -67389988 + MIR SINE MIR 31 262 0 708 174 10 26 chr11 83394049 83394360 -67389193 + (TGGG)n Simple_repeat Simple_repeat 1 306 0 1882 117 0 0 chr11 83394393 83394640 -67388913 + AluSx SINE Alu 55 301 -11 261 287 116 0 chr11 83394746 83394875 -67388678 - MIR SINE MIR 0 262 119 379 200 43 87 chr11 83395016 83395131 -67388422 + L2 LINE L2 3203 3312 -1 207 279 15 15 chr11 83395542 83395610 -67387943 + MIR SINE MIR 64 131 -77 411 283 51 7 chr11 83395692 83395830 -67387723 + MIR SINE MIR 20 163 -99 332 314 17 0 chr11 83396642 83396760 -67386793 + MIR SINE MIR 30 149 -59 316 274 85 0 chr11 83397528 83397634 -67385919 - MIR3 SINE MIR -7 201 87 847 296 79 14 chr11 83397822 83398434 -67385119 + L2 LINE L2 2657 3311 -2 1765 134 62 16 chr11 83398869 83399189 -67384364 + MER44D DNA MER2_type 5 609 0 1440 85 0 0 chr11 83399193 83399717 -67383836 + (CATATA)n Simple_repeat Simple_repeat 1 524 0 952 183 12 6 chr11 83400740 83400909 -67382644 - FRAM SINE Alu -7 169 1 291 311 137 15 chr11 83400916 83401113 -67382440 - MIR SINE MIR -24 238 19 1780 158 61 39 chr11 83401118 83401400 -67382153 - L1MB7 LINE L1 0 6184 5889 1971 114 6 99 chr11 83401400 83401742 -67381811 - AluSg SINE Alu 0 310 1 1780 158 61 39 chr11 83401742 83401869 -67381684 - L1MB7 LINE L1 -295 5889 5766 346 318 0 40 chr11 83402573 83402721 -67380832 - MIR SINE MIR -112 150 9 304 261 78 50 chr11 83402871 83403051 -67380502 + L2 LINE L2 2922 3106 -166 303 242 37 75 chr11 83403144 83403305 -67380248 + MER112 DNA MER1_type 22 176 -84 1215 117 12 0 chr11 83403347 83403510 -67380043 - AluSp SINE Alu -11 302 138 403 261 43 0 chr11 83403531 83403646 -67379907 - MIR SINE MIR -58 150 31 277 250 45 45 chr11 83403678 83403790 -67379763 - MIR3 SINE MIR -14 194 83 331 217 108 70 chr11 83403907 83404064 -67379489 + MIR3 SINE MIR 32 194 -14 470 244 205 6 chr11 83404954 83405110 -67378443 - MIR SINE MIR -14 248 62 2300 126 8 3 chr11 83405125 83405507 -67378046 - L1MA4 LINE L1 -56 6244 5861 195 156 0 0 chr11 83405736 83405768 -67377785 - L2 LINE L2 -1 3271 3240 235 229 23 188 chr11 83405847 83406065 -67377488 - L2 LINE L2 -31 3282 3101 3300 324 74 23 chr11 83406173 83407764 -67375789 - ERVL LTR ERVL -537 5227 3556 2704 318 60 33 chr11 83407770 83408195 -67375358 - ERVL LTR ERVL -2206 3448 3036 483 55 11 132 chr11 83408195 83408286 -67375267 + MADE1 DNA Mariner 1 80 0 2704 318 60 33 chr11 83408286 83409557 -67373996 - ERVL LTR ERVL -2618 3036 1693 915 266 120 23 chr11 83410083 83410557 -67372996 - LTR33 LTR ERVL -1 520 1 254 329 94 16 chr11 83411142 83411479 -67372074 - L2 LINE L2 -182 3090 2735 411 208 10 21 chr11 83411506 83411602 -67371951 - MIR SINE MIR -96 166 72 584 266 35 0 chr11 83411672 83411815 -67371738 - MLT1G1 LTR MaLR 0 595 448 312 235 92 41 chr11 83412438 83412536 -67371017 + L2 LINE L2 3203 3305 -8 * 691 232 13 13 chr11 83412534 83412685 -67370868 - MIR SINE MIR -109 153 3 2446 98 0 0 chr11 83412704 83413011 -67370542 + AluSx SINE Alu 1 307 -5 326 339 59 0 chr11 83413158 83413276 -67370277 + L2 LINE L2 3188 3312 -1 * 400 264 54 16 chr11 83413275 83413404 -67370149 - MIR SINE MIR -121 141 8 193 255 20 0 chr11 83413398 83413449 -67370104 + MIR SINE MIR 96 147 -115 * 568 209 6 12 chr11 83413651 83413787 -67369766 + (TGGA)n Simple_repeat Simple_repeat 3 139 -25 2053 156 30 47 chr11 83413787 83414190 -67369363 - MSTD LTR MaLR 0 396 1 568 209 6 12 chr11 83414190 83414216 -67369337 + (TGGA)n Simple_repeat Simple_repeat 139 164 0 1724 38 0 42 chr11 83414313 83414553 -67369000 - L1PA4 LINE L1 0 6155 5926 2234 116 0 0 chr11 83414776 83415068 -67368485 + AluSx SINE Alu 5 296 -16 199 283 17 0 chr11 83415226 83415286 -67368267 - MIR SINE MIR -71 137 77 189 375 12 0 chr11 83416232 83416312 -67367241 - L3 LINE CR1 -735 842 762 1778 164 89 35 chr11 83416822 83417249 -67366304 - LTR47A LTR ERVL 0 452 3 216 250 0 73 chr11 83417853 83417921 -67365632 + MIR SINE MIR 123 185 -77 711 174 0 23 chr11 83418083 83418235 -67365318 - FRAM SINE Alu 0 40 1 453 182 13 0 chr11 83418235 83418311 -67365242 - AluJ/FLAM SINE Alu -234 78 2 277 271 27 69 chr11 83418970 83419158 -67364395 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 343 211 0 40 chr11 83419244 83419320 -67364233 - MIR3 SINE MIR -22 186 114 2186 131 3 0 chr11 83419903 83420209 -67363344 + AluJo SINE Alu 1 307 -5 2940 199 294 14 chr11 83420651 83421570 -67361983 + L1MC4 LINE L1 6463 7638 -404 349 282 55 25 chr11 83421572 83421774 -67361779 + L1MC4 LINE L1 7730 7937 -105 731 248 44 47 chr11 83422011 83422285 -67361268 + MLT1J LTR MaLR 231 503 -8 1777 288 70 45 chr11 83422296 83422789 -67360764 + L1M4 LINE L1 3868 4348 -1798 2129 114 13 13 chr11 83422789 83423088 -67360465 + AluJb SINE Alu 1 299 -13 1777 288 70 45 chr11 83423088 83423913 -67359640 + L1M4 LINE L1 4348 5218 -928 977 220 37 14 chr11 83423919 83424133 -67359420 + MLT1G1 LTR MaLR 7 225 -370 2281 120 3 0 chr11 83424403 83424711 -67358842 + AluSx SINE Alu 1 309 -3 406 167 0 33 chr11 83424854 83424944 -67358609 + MIR SINE MIR 46 132 -76 258 315 56 39 chr11 83425038 83425216 -67358337 + L2 LINE L2 2942 3122 -150 346 208 83 76 chr11 83426333 83426477 -67357076 + LTR16C LTR ERVL 347 491 0 1709 132 28 4 chr11 83426690 83426940 -67356613 + AluJb SINE Alu 6 261 -51 2473 79 3 0 chr11 83427140 83427443 -67356110 + AluSp SINE Alu 1 304 -9 1850 152 19 29 chr11 83427486 83427795 -67355758 + AluJb SINE Alu 1 306 -6 610 226 46 78 chr11 83428170 83428607 -67354946 + MLT1D LTR MaLR 1 505 0 306 106 0 0 chr11 83429283 83429330 -67354223 + (CA)n Simple_repeat Simple_repeat 1 47 0 245 313 80 0 chr11 83429746 83429858 -67353695 - MIR SINE MIR -93 169 49 * 975 275 52 50 chr11 83429857 83429931 -67353622 + L2 LINE L2 2677 2749 -564 2144 107 4 4 chr11 83429931 83430241 -67353312 + AluSg SINE Alu 1 310 0 975 275 52 50 chr11 83430241 83430765 -67352788 + L2 LINE L2 2749 3313 0 259 321 113 6 chr11 83431039 83431207 -67352346 - MIR SINE MIR -30 232 47 1237 178 131 42 chr11 83431641 83431900 -67351653 + AluJo SINE Alu 1 282 -30 270 0 0 0 chr11 83431903 83431933 -67351620 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 220 226 65 0 chr11 83432346 83432408 -67351145 - MIR3 SINE MIR -136 72 7 217 328 158 6 chr11 83432424 83432595 -67350958 - MIR SINE MIR -10 252 56 238 323 9 14 chr11 83433166 83433387 -67350166 + GA-rich Low_complexity Low_complexity 1 219 0 406 321 181 0 chr11 83433866 83434153 -67349400 - L2 LINE L2 0 3272 2934 975 167 5 32 chr11 83434937 83435123 -67348430 - AluJ SINE Alu -11 301 121 392 275 26 39 chr11 83435123 83435301 -67348252 - L1ME LINE L1 -353 5768 5589 1061 120 19 131 chr11 83435302 83435384 -67348169 + MER30 DNA MER1_type 1 91 -139 664 146 81 0 chr11 83435384 83435507 -67348046 + FLAM_C SINE Alu 1 133 0 1061 120 19 131 chr11 83435507 83435544 -67348009 + MER30 DNA MER1_type 91 131 -99 435 38 0 0 chr11 83435544 83435597 -67347956 + (TA)n Simple_repeat Simple_repeat 2 54 0 1704 82 0 157 chr11 83435597 83435953 -67347600 + AluSx SINE Alu 3 302 0 1061 120 19 131 chr11 83435953 83436090 -67347463 + MER30 DNA MER1_type 129 230 0 288 77 0 0 chr11 83436230 83436269 -67347284 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 881 136 0 0 chr11 83436271 83436389 -67347164 - AluJ SINE Alu -194 118 1 304 263 79 0 chr11 83436398 83436550 -67347003 - L1ME LINE L1 -731 5431 5268 27 29 0 0 chr11 83436703 83436737 -67346816 + AT_rich Low_complexity Low_complexity 1 34 0 371 285 71 46 chr11 83438262 83438549 -67345004 - L2 LINE L2 -251 3021 2736 1797 244 122 7 chr11 83438562 83439111 -67344442 - L1ME3A LINE L1 -1 6169 5558 582 281 0 29 chr11 83440100 83440296 -67343257 - MIR SINE MIR -34 228 41 435 246 63 0 chr11 83440471 83440597 -67342956 + MIR SINE MIR 75 208 -54 339 288 85 20 chr11 83442700 83442853 -67340700 + MIR SINE MIR 24 186 -76 480 296 43 6 chr11 83444475 83444637 -67338916 + MIR SINE MIR 18 185 -77 1392 243 45 3 chr11 83445337 83445711 -67337842 - LTR16A LTR ERVL -2 448 59 397 323 32 54 chr11 83445815 83446151 -67337402 + L2 LINE L2 2746 3079 -193 682 227 5 72 chr11 83446436 83446630 -67336923 - MIR SINE MIR -11 251 71 263 324 28 49 chr11 83446914 83447056 -67336497 - MIR3 SINE MIR -48 160 22 515 255 32 13 chr11 83447351 83447544 -67336009 + MIR SINE MIR 5 195 -62 251 325 156 7 chr11 83447770 83447924 -67335629 + L3 LINE CR1 1314 1490 -87 378 264 90 0 chr11 83447970 83448114 -67335439 - MIR3 SINE MIR -15 193 37 277 258 117 17 chr11 83448129 83448249 -67335304 - MIR SINE MIR -103 159 28 582 218 28 93 chr11 83449273 83449489 -67334064 - L2 LINE L2 -1 3312 3111 195 288 0 0 chr11 83449875 83449934 -67333619 - MIR SINE MIR -112 96 38 181 188 0 0 chr11 83450501 83450533 -67333020 - MIR SINE MIR -6 256 225 1421 171 46 7 chr11 83450608 83450888 -67332665 - MLT1B LTR MaLR 0 390 100 864 234 22 0 chr11 83450913 83451097 -67332456 + MIR SINE MIR 13 200 -62 301 248 107 16 chr11 83451197 83451318 -67332235 + MIR3 SINE MIR 59 190 -18 589 327 51 0 chr11 83452223 83452440 -67331113 + MIR SINE MIR 25 252 -10 345 324 176 0 chr11 83452566 83452742 -67330811 - MIR SINE MIR -6 256 50 380 344 88 22 chr11 83452830 83453057 -67330496 - MER112 DNA MER1_type -17 243 2 196 324 10 88 chr11 83454137 83454239 -67329314 + L2 LINE L2 3179 3272 0 476 199 60 90 chr11 83454345 83454511 -67329042 + MIR3 SINE MIR 46 206 -2 11854 145 82 41 chr11 83454992 83455011 -67328542 - L1M4 LINE L1 -3467 2915 2898 649 196 31 6 chr11 83455011 83455174 -67328379 - L1MB3 LINE L1 0 6183 6017 11854 145 82 41 chr11 83455174 83455384 -67328169 - L1M4 LINE L1 -3484 2898 2698 2003 158 0 3 chr11 83455384 83455682 -67327871 - AluJb SINE Alu -15 297 1 11854 145 82 41 chr11 83455682 83456024 -67327529 - L1M4 LINE L1 -3684 2698 2371 1995 117 3 90 chr11 83456024 83456367 -67327186 - AluSq SINE Alu 0 313 1 11854 145 82 41 chr11 83456367 83456585 -67326968 - L1M4 LINE L1 -4011 2371 2163 836 150 0 0 chr11 83456585 83456718 -67326835 - FLAM_C SINE Alu 0 133 1 11854 145 82 41 chr11 83456718 83458700 -67324853 - L1M4 LINE L1 -4219 2163 15 605 234 133 23 chr11 83458777 83458995 -67324558 - MIR SINE MIR 0 262 21 315 288 121 23 chr11 83459108 83459240 -67324313 - L2 LINE L2 -214 3058 2914 407 248 88 0 chr11 83459644 83459769 -67323784 + MIR SINE MIR 77 212 -50 180 247 99 12 chr11 83459797 83459878 -67323675 + MER5A DNA MER1_type 17 104 -85 1946 153 7 10 chr11 83460265 83460565 -67322988 + AluJo SINE Alu 1 299 -13 552 258 27 25 chr11 83460594 83460798 -67322755 - MIR SINE MIR -56 206 4 261 307 96 42 chr11 83460819 83460985 -67322568 + MIR3 SINE MIR 16 190 -18 365 295 111 66 chr11 83461171 83461442 -67322111 - L2 LINE L2 -421 2893 2611 520 227 204 23 chr11 83461970 83462142 -67321411 - MIR SINE MIR -24 238 36 22 0 0 0 chr11 83462731 83462753 -67320800 + AT_rich Low_complexity Low_complexity 1 22 0 195 139 0 0 chr11 83463474 83463510 -67320043 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr11 83463697 83463718 -67319835 + GC_rich Low_complexity Low_complexity 1 21 0 44 75 0 0 chr11 83463750 83463843 -67319710 + GC_rich Low_complexity Low_complexity 1 93 0 24 0 0 0 chr11 83463861 83463885 -67319668 + GC_rich Low_complexity Low_complexity 1 24 0 202 324 14 14 chr11 83466352 83466426 -67317127 + MIR SINE MIR 33 106 -102 195 272 126 0 chr11 83466870 83466973 -67316580 - L2 LINE L2 -222 3050 2935 492 293 98 0 chr11 83467525 83467740 -67315813 - MIR SINE MIR -6 256 21 413 269 25 8 chr11 83467925 83468044 -67315509 + MIR SINE MIR 22 142 -66 204 205 359 26 chr11 83469140 83469257 -67314296 - MIR SINE MIR -71 191 36 331 250 142 0 chr11 83470328 83470470 -67313083 - MIR SINE MIR -71 137 5 297 247 13 167 chr11 83470479 83470629 -67312924 + L2 LINE L2 3137 3263 -9 411 302 0 23 chr11 83470656 83470785 -67312768 - MIR3 SINE MIR -44 164 39 197 341 71 0 chr11 83470925 83471010 -67312543 - MIR SINE MIR -36 226 136 978 92 7 38 chr11 83471025 83471314 -67312239 + THE1A LTR MaLR 1 355 0 11435 73 11 78 chr11 83471314 83473008 -67310545 + THE1A-int LTR MaLR 1 1580 0 2668 77 6 25 chr11 83473008 83473370 -67310183 + THE1A LTR MaLR 1 355 0 286 336 44 0 chr11 83473415 83473528 -67310025 + MIR SINE MIR 94 211 -51 194 219 12 85 chr11 83473536 83473618 -67309935 + L2 LINE L2 3166 3241 -31 193 215 264 0 chr11 83474864 83474985 -67308568 - MIR3 SINE MIR -55 153 1 339 288 76 8 chr11 83475020 83475138 -67308415 + MIR3 SINE MIR 36 161 -47 331 352 74 11 chr11 83475457 83475633 -67307920 + MIR SINE MIR 68 254 -8 475 288 85 0 chr11 83477687 83477840 -67305713 - MIR3 SINE MIR -14 194 29 257 245 181 0 chr11 83479097 83479191 -67304362 - L3 LINE CR1 -100 1477 1367 297 290 137 14 chr11 83480151 83480281 -67303272 + MIR SINE MIR 21 166 -87 1243 113 94 30 chr11 83480282 83480485 -67303068 + AluJb SINE Alu 1 216 -96 333 207 0 0 chr11 83480508 83480595 -67302958 + A-rich Low_complexity Low_complexity 1 87 0 581 149 43 0 chr11 83480601 83480695 -67302858 + AluJb SINE Alu 199 296 -16 400 192 20 0 chr11 83480696 83480795 -67302758 + GA-rich Low_complexity Low_complexity 2 102 0 220 308 22 11 chr11 83480797 83480888 -67302665 + MIR SINE MIR 143 234 -28 284 276 112 0 chr11 83481465 83481581 -67301972 - MIR3 SINE MIR -2 206 78 763 164 178 7 chr11 83481593 83481745 -67301808 - MER45A DNA AcHobo 0 178 1 281 185 15 0 chr11 83482662 83482727 -67300826 + CT-rich Low_complexity Low_complexity 1 66 0 1524 189 91 0 chr11 83482727 83483013 -67300540 - AluJo SINE Alu 0 312 1 785 252 69 20 chr11 83483330 83483576 -67299977 + MIR SINE MIR 2 259 -3 282 254 90 3 chr11 83484321 83484448 -67299105 + MLT1H LTR MaLR 21 195 -354 449 238 74 0 chr11 83484542 83484664 -67298889 + MLT1H LTR MaLR 419 549 0 2331 108 0 0 chr11 83485080 83485387 -67298166 - AluSc SINE Alu 0 309 3 2288 94 7 3 chr11 83485388 83485687 -67297866 - AluSq SINE Alu -13 300 1 563 305 18 82 chr11 83486147 83486475 -67297078 + L2 LINE L2 2966 3272 0 353 313 70 7 chr11 83486480 83486623 -67296930 - MIR3 SINE MIR -65 143 1 764 160 0 28 chr11 83487429 83487610 -67295943 + GA-rich Low_complexity Low_complexity 3 178 0 897 150 0 0 chr11 83488378 83488511 -67295042 + FLAM_C SINE Alu 1 133 0 709 314 167 18 chr11 83488534 83489236 -67294317 - L2 LINE L2 -8 3305 2496 585 283 128 11 chr11 83489241 83489428 -67294125 - MIR SINE MIR -26 236 28 1923 149 10 13 chr11 83489882 83490191 -67293362 + AluSx SINE Alu 3 310 -2 2616 54 0 0 chr11 83490193 83490491 -67293062 + AluY SINE Alu 1 298 -13 1867 102 119 51 chr11 83491237 83491590 -67291963 - MER51B LTR ERV1 0 377 1 8714 103 34 19 chr11 83491591 83493408 -67290145 - MER51B-int LTR ERV1 0 7816 5735 2305 114 10 0 chr11 83493408 83493716 -67289837 + AluSx SINE Alu 1 311 -1 8714 103 34 19 chr11 83493716 83494211 -67289342 - MER51B-int LTR ERV1 -2081 5735 5249 5179 111 37 33 chr11 83494210 83494616 -67288937 - MER51B-int LTR ERV1 -1962 3053 2650 * 2134 98 46 7 chr11 83494616 83494901 -67288652 - AluY SINE Alu -15 296 1 5179 111 37 33 chr11 83494901 83495550 -67288003 - MER51B-int LTR ERV1 -2365 2650 1889 2157 104 10 13 chr11 83495550 83495848 -67287705 + AluSx SINE Alu 1 297 -15 5179 111 37 33 chr11 83495848 83495902 -67287651 - MER51B-int LTR ERV1 -3126 1889 1837 4667 78 16 5 chr11 83495902 83496923 -67286630 - MER11A LTR ERVK 0 1266 1 19248 126 28 18 chr11 83496923 83500138 -67283415 - MER51B-int LTR ERV1 -4153 3663 417 903 104 110 37 chr11 83500151 83500226 -67283327 - MER51B-int LTR ERV1 -7640 176 108 456 19 0 0 chr11 83500226 83500279 -67283274 + (GA)n Simple_repeat Simple_repeat 2 54 0 903 104 110 37 chr11 83500279 83500367 -67283186 - MER51B-int LTR ERV1 -7708 108 1 1656 105 26 8 chr11 83500367 83500699 -67282854 - MER51B LTR ERV1 0 377 22 591 265 98 17 chr11 83500832 83501119 -67282434 + L1ME LINE L1 5508 5817 -304 803 174 8 0 chr11 83501131 83501263 -67282290 + FLAM_C SINE Alu 1 133 0 480 18 0 0 chr11 83501289 83501346 -67282207 + (TCTCCC)n Simple_repeat Simple_repeat 5 61 0 6065 64 17 13 chr11 83501346 83502543 -67281010 + SVA Other Other 57 1047 -339 3009 195 29 10 chr11 83502613 83503572 -67279981 + L1MD2 LINE L1 4954 5931 -428 223 95 82 41 chr11 83503596 83503743 -67279810 + (TATAA)n Simple_repeat Simple_repeat 5 157 0 542 163 0 0 chr11 83503965 83504057 -67279496 - AluJb SINE Alu -13 299 208 296 297 46 86 chr11 83504327 83504557 -67278996 + MIR3 SINE MIR 7 235 -27 216 0 0 0 chr11 83504617 83504641 -67278912 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 404 306 71 25 chr11 83504719 83504915 -67278638 - L2 LINE L2 -156 3116 2912 1903 171 0 7 chr11 83505199 83505509 -67278044 + AluJo SINE Alu 1 308 -4 3955 126 27 38 chr11 83506220 83506925 -67276628 + MER4D LTR ERV1 1 697 -175 16674 30 6 0 chr11 83506925 83509660 -67273893 - L1PA3 LINE L1 0 6155 3409 732 105 0 0 chr11 83509660 83509765 -67273788 - L1P LINE L1 -6041 105 1 935 113 0 0 chr11 83509778 83509902 -67273651 - FLAM_C SINE Alu -19 124 1 954 138 0 0 chr11 83510735 83510873 -67272680 - AluSx SINE Alu -19 291 154 609 78 13 0 chr11 83510873 83510950 -67272603 - AluSx SINE Alu -213 100 23 496 345 36 9 chr11 83511107 83511330 -67272223 + MIR SINE MIR 34 262 0 187 359 0 0 chr11 83511597 83511661 -67271892 + MIR SINE MIR 162 225 -37 987 91 0 71 chr11 83512193 83512347 -67271206 + FLAM_C SINE Alu 1 143 0 180 0 0 0 chr11 83512710 83512730 -67270823 + (TTG)n Simple_repeat Simple_repeat 2 21 0 240 35 0 0 chr11 83512770 83512799 -67270754 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 185 234 0 94 chr11 83512998 83513062 -67270491 + L2 LINE L2 3024 3081 -191 2133 152 81 34 chr11 83513147 83513342 -67270211 + MSTB LTR MaLR 1 185 -241 1406 186 64 64 chr11 83513342 83513638 -67269915 - AluJb SINE Alu -16 296 1 2133 152 81 34 chr11 83513638 83513849 -67269704 + MSTB LTR MaLR 185 426 0 1066 196 52 129 chr11 83513874 83514049 -67269504 - LTR56 LTR ERV1 0 445 258 1743 142 52 14 chr11 83514049 83514337 -67269216 + AluSx SINE Alu 14 312 0 1066 196 52 129 chr11 83514337 83514641 -67268912 - LTR56 LTR ERV1 -187 258 3 379 272 19 48 chr11 83515064 83515167 -67268386 + MIR SINE MIR 47 146 -62 248 163 41 0 chr11 83515169 83515218 -67268335 + MLT1A1 LTR MaLR 1 51 -323 26 64 0 0 chr11 83515218 83515265 -67268288 + AT_rich Low_complexity Low_complexity 1 47 0 1362 183 17 38 chr11 83515296 83515621 -67267932 + MLT1A1 LTR MaLR 36 416 -12 180 281 163 59 chr11 83515676 83515811 -67267742 - L2 LINE L2 -3 3269 3121 580 290 121 10 chr11 83515831 83516038 -67267515 - MIR SINE MIR -6 256 27 1164 174 0 0 chr11 83516160 83516350 -67267203 - AluJb SINE Alu -13 299 110 850 255 101 18 chr11 83516350 83516687 -67266866 - L2 LINE L2 -135 3178 2814 233 316 13 0 chr11 83516912 83516988 -67266565 + MIR SINE MIR 180 256 -6 184 258 43 75 chr11 83516999 83517092 -67266461 + L2 LINE L2 3141 3230 -42 264 329 44 48 chr11 83517117 83517345 -67266208 + L2 LINE L2 2513 2739 -575 448 307 154 11 chr11 83517896 83518163 -67265390 + L2 LINE L2 2578 2882 -432 181 298 21 0 chr11 83518372 83518419 -67265134 - L2 LINE L2 -3 3310 3263 255 361 67 0 chr11 83518992 83519111 -67264442 - L2 LINE L2 -46 3226 3100 214 287 32 11 chr11 83519755 83519849 -67263704 + CT-rich Low_complexity Low_complexity 2 97 0 442 267 267 9 chr11 83519982 83520207 -67263346 - MLT1G1 LTR MaLR -312 283 1 432 285 22 35 chr11 83520250 83520478 -67263075 + L1M4 LINE L1 2243 2467 -3679 252 316 84 0 chr11 83520532 83520627 -67262926 + L2 LINE L2 2985 3087 -185 22 35 0 0 chr11 83521238 83521267 -67262286 + AT_rich Low_complexity Low_complexity 1 29 0 432 121 0 0 chr11 83521277 83521335 -67262218 - AluJ/FLAM SINE Alu -241 71 14 439 314 49 5 chr11 83521338 83521523 -67262030 - L1ME3A LINE L1 -285 5885 5693 1740 148 52 14 chr11 83521523 83521814 -67261739 - AluJo SINE Alu -10 302 1 314 281 66 8 chr11 83521858 83521979 -67261574 - MIR SINE MIR -65 197 70 226 296 42 0 chr11 83522975 83523046 -67260507 - MIR SINE MIR -108 154 81 592 296 99 9 chr11 83523159 83523382 -67260171 + MIR SINE MIR 12 254 -8 319 93 0 0 chr11 83523502 83523545 -67260008 + MER51A-int LTR ERV1 7107 7149 -388 2587 45 0 3 chr11 83523549 83523858 -67259695 - AluY SINE Alu -1 310 3 604 167 87 0 chr11 83523879 83524005 -67259548 + LTR54B LTR ERV1 5 141 -357 2105 141 26 23 chr11 83524005 83524353 -67259200 + MER51A-int LTR ERV1 7468 7816 0 4238 89 55 34 chr11 83524354 83524975 -67258578 + MER51A LTR ERV1 1 634 0 273 323 31 10 chr11 83525660 83525756 -67257797 + MIR SINE MIR 116 213 -49 2022 153 0 0 chr11 83525759 83526060 -67257493 + AluJo SINE Alu 3 303 -9 2092 128 0 0 chr11 83526061 83526349 -67257204 + AluSq SINE Alu 2 289 -24 633 61 0 0 chr11 83526349 83526431 -67257122 + (TA)n Simple_repeat Simple_repeat 2 83 0 651 212 15 23 chr11 83526451 83526583 -67256970 + FLAM_A SINE Alu 3 133 0 306 73 0 0 chr11 83526626 83526667 -67256886 + (TGG)n Simple_repeat Simple_repeat 3 43 0 505 358 14 5 chr11 83526668 83526886 -67256667 - MIR SINE MIR -3 259 40 225 0 0 0 chr11 83526932 83526957 -67256596 + (ATTG)n Simple_repeat Simple_repeat 1 25 0 181 359 39 10 chr11 83527056 83527159 -67256394 - L2 LINE L2 -476 2838 2733 222 271 57 0 chr11 83527170 83527240 -67256313 - L2 LINE L2 -30 3242 3169 2228 113 6 13 chr11 83527332 83527643 -67255910 - AluSq SINE Alu -4 309 1 306 337 126 34 chr11 83527783 83528298 -67255255 - L2 LINE L2 -224 3048 2582 1767 139 91 0 chr11 83528298 83528572 -67254981 - AluJb SINE Alu -13 299 1 306 337 126 34 chr11 83528572 83528623 -67254930 - L2 LINE L2 -690 2582 2537 216 0 0 0 chr11 83528623 83528647 -67254906 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 306 337 126 34 chr11 83528647 83528727 -67254826 - L2 LINE L2 -735 2537 2314 2337 99 0 6 chr11 83528727 83529041 -67254512 + AluSx SINE Alu 1 312 0 1488 120 5 0 chr11 83529041 83529249 -67254304 + AluSg/x SINE Alu 102 310 0 251 284 14 0 chr11 83529304 83529378 -67254175 + MLT1L LTR MaLR 1 75 -540 255 122 0 24 chr11 83529526 83529567 -67253986 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 959 144 0 0 chr11 83529569 83529825 -67253728 - FLAM_C SINE Alu 0 256 1 582 174 200 32 chr11 83529934 83530124 -67253429 + MLT1J LTR MaLR 287 508 -3 719 280 11 0 chr11 83531458 83531640 -67251913 + MIR SINE MIR 2 185 -77 2115 125 3 0 chr11 83531656 83531944 -67251609 + AluSx SINE Alu 1 289 -23 280 265 121 0 chr11 83531964 83532047 -67251506 + L2 LINE L2 3221 3313 0 330 294 169 0 chr11 83532658 83532818 -67250735 + L1ME4a LINE L1 5854 6040 -81 2322 94 3 0 chr11 83532824 83533123 -67250430 - AluSx SINE Alu -4 308 9 1506 211 10 22 chr11 83533143 83533502 -67250051 - AluJo SINE Alu 0 355 1 605 269 122 40 chr11 83533582 83533829 -67249724 + L1ME3A LINE L1 5541 5831 -339 1636 168 29 23 chr11 83533829 83534139 -67249414 + AluJo SINE Alu 1 312 0 605 269 122 40 chr11 83534139 83534267 -67249286 + L1ME3A LINE L1 5831 5947 -223 30 45 0 0 chr11 83534491 83534535 -67249018 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr11 83534662 83534690 -67248863 + AT_rich Low_complexity Low_complexity 1 28 0 886 300 16 23 chr11 83534871 83535128 -67248425 + MIR SINE MIR 7 261 -1 428 234 157 86 chr11 83535696 83535791 -67247762 + L1ME4a LINE L1 5729 5816 -305 1767 166 14 3 chr11 83535791 83536086 -67247467 - AluJo SINE Alu -10 302 5 428 234 157 86 chr11 83536086 83536341 -67247212 + L1ME4a LINE L1 5816 6104 -17 1982 139 7 0 chr11 83536354 83536679 -67246874 + AluSq SINE Alu 1 327 0 4758 162 13 38 chr11 83536683 83537469 -67246084 - L1MB8 LINE L1 -16 6162 5424 2501 68 0 0 chr11 83537469 83537778 -67245775 - AluY SINE Alu -2 309 1 4758 162 13 38 chr11 83537778 83538531 -67245022 - L1MB8 LINE L1 -754 5424 4654 233 146 209 45 chr11 83538946 83539056 -67244497 - Charlie7 DNA MER1_type -46 2566 2439 238 235 0 111 chr11 83539118 83539199 -67244354 + L2 LINE L2 3180 3251 -21 1690 137 34 31 chr11 83539219 83539512 -67244041 + AluSx SINE Alu 1 294 -18 2366 82 7 3 chr11 83539553 83539856 -67243697 + AluSc SINE Alu 1 304 -5 897 159 28 28 chr11 83540406 83540628 -67242925 - AluJb SINE Alu 0 322 101 330 291 53 121 chr11 83541278 83541749 -67241804 - L1M2 LINE L1 -5624 1225 787 491 319 173 14 chr11 83543039 83543334 -67240219 + L3 LINE CR1 1128 1469 -108 1802 172 7 7 chr11 83543459 83543761 -67239792 + AluJo SINE Alu 1 302 -10 496 303 114 14 chr11 83544198 83544409 -67239144 - MIR SINE MIR 0 262 31 5091 164 21 103 chr11 83544789 83545112 -67238441 - Tigger6a DNA MER2_type -514 1083 735 2336 97 3 0 chr11 83545112 83545411 -67238142 - AluSx SINE Alu -10 302 3 5091 164 21 103 chr11 83545411 83545498 -67238055 - Tigger6a DNA MER2_type -862 735 642 1864 143 7 43 chr11 83545498 83545799 -67237754 - AluJb SINE Alu -22 290 1 5091 164 21 103 chr11 83545799 83546026 -67237527 - Tigger6a DNA MER2_type -955 642 398 2171 122 0 0 chr11 83546026 83546322 -67237231 - AluSx SINE Alu -15 297 2 2029 124 16 44 chr11 83546325 83546640 -67236913 - AluSx SINE Alu -6 306 1 5091 164 21 103 chr11 83546640 83547171 -67236382 - Tigger6a DNA MER2_type -1201 396 5 430 257 27 68 chr11 83547175 83547323 -67236230 - MIR SINE MIR -74 188 47 546 194 0 0 chr11 83547470 83547568 -67235985 - L1M3 LINE L1 -390 5781 5684 187 225 0 0 chr11 83547602 83547642 -67235911 - L2 LINE L2 -1 3312 3273 2306 119 0 0 chr11 83547701 83548012 -67235541 + AluSx SINE Alu 1 311 -1 226 290 130 10 chr11 83548079 83548179 -67235374 - Tigger8 DNA MER2_type -13 653 542 369 0 0 0 chr11 83548906 83548947 -67234606 + (TG)n Simple_repeat Simple_repeat 2 42 0 3585 147 105 107 chr11 83548952 83549835 -67233718 + MER21A LTR ERV1 33 914 -17 3129 117 25 41 chr11 83549983 83550379 -67233174 - L1MB2 LINE L1 -2 6169 5768 1692 203 0 0 chr11 83550379 83550674 -67232879 - AluJb SINE Alu -17 295 1 1486 157 119 11 chr11 83550676 83550944 -67232609 - AluJb SINE Alu -13 299 3 3129 117 25 41 chr11 83550944 83551055 -67232498 - L1MB2 LINE L1 -404 5767 5667 21 0 0 0 chr11 83551171 83551192 -67232361 + AT_rich Low_complexity Low_complexity 1 21 0 611 274 59 30 chr11 83551427 83551664 -67231889 - MIR SINE MIR 0 262 19 260 184 0 0 chr11 83551701 83551750 -67231803 - L1ME3 LINE L1 -8 6154 6106 4170 145 33 40 chr11 83551750 83552542 -67231011 - MER4D LTR ERV1 0 864 103 2094 120 3 0 chr11 83552597 83552888 -67230665 - AluSx SINE Alu -20 292 1 376 329 48 34 chr11 83552980 83553126 -67230427 - MIR3 SINE MIR -32 176 29 317 289 240 0 chr11 83553277 83553381 -67230172 - MER5A DNA MER1_type 0 189 61 1891 124 46 29 chr11 83553381 83553719 -67229834 - AluJo SINE Alu 0 343 1 384 211 0 0 chr11 83553719 83553790 -67229763 - MER5A DNA MER1_type -115 74 4 342 301 129 34 chr11 83554681 83554890 -67228663 + MIR SINE MIR 28 256 -6 1624 151 15 4 chr11 83554970 83555235 -67228318 + MLT2C1 LTR ERVL 1 268 -129 2262 100 3 13 chr11 83555617 83555928 -67227625 - AluSg SINE Alu -2 308 1 320 258 36 118 chr11 83555938 83556159 -67227394 - L1MC4 LINE L1 0 8042 7840 1439 107 15 0 chr11 83556244 83556440 -67227113 - AluSg/x SINE Alu -6 306 108 974 162 0 18 chr11 83556439 83556606 -67226947 - AluYa8 SINE Alu -146 164 1 * 2831 178 97 39 chr11 83556606 83557268 -67226285 - L1ME2 LINE L1 -32 6132 5433 244 284 0 30 chr11 83558056 83558123 -67225430 + 7SK RNA RNA 1 65 -128 879 255 44 79 chr11 83558274 83558744 -67224809 - L1ME3A LINE L1 -219 5951 5592 653 75 0 0 chr11 83558748 83558828 -67224725 + MADE1 DNA Mariner 1 80 0 865 130 62 0 chr11 83558834 83558980 -67224573 - Charlie1 DNA MER1_type -6 2755 2601 2684 206 75 8 chr11 83558997 83559877 -67223676 - L1ME2 LINE L1 -304 5794 4843 1869 200 69 36 chr11 83559877 83560398 -67223155 - L1ME2 LINE L1 -1922 4158 3621 1065 229 115 19 chr11 83560392 83560811 -67222742 - L1ME2 LINE L1 -2693 3387 2929 * 1707 158 36 7 chr11 83560814 83561092 -67222461 - MER21B LTR ERV1 -10 853 568 1151 169 41 9 chr11 83561098 83561355 -67222198 - MER39 LTR ERV1 -288 419 10 461 186 32 1 chr11 83561377 83561487 -67222066 + MLT1A1 LTR MaLR 48 170 -204 1768 174 7 3 chr11 83561489 83561783 -67221770 + AluJb SINE Alu 5 299 -13 776 255 130 46 chr11 83561853 83562331 -67221222 - L1ME2 LINE L1 -4150 2111 1594 2793 255 60 39 chr11 83562337 83562515 -67221038 - L1ME2 LINE L1 -4902 1178 1005 2450 67 3 3 chr11 83562515 83562815 -67220738 - AluY SINE Alu -11 300 1 2793 255 60 39 chr11 83562815 83563800 -67219753 - L1ME2 LINE L1 -5075 1005 2 567 262 119 37 chr11 83563771 83563941 -67219612 - L1MEd LINE L1 -5349 912 757 * 2295 112 6 13 chr11 83563941 83564254 -67219299 - AluSx SINE Alu -1 311 1 567 262 119 37 chr11 83564254 83564518 -67219035 - L1MEd LINE L1 -5504 757 442 597 274 78 29 chr11 83564724 83564969 -67218584 - L1MEc LINE L1 -6104 292 36 541 264 66 18 chr11 83565095 83565263 -67218290 - L1MEd LINE L1 -3572 2557 2374 1931 148 3 25 chr11 83565263 83565580 -67217973 - AluJo SINE Alu -2 310 1 541 264 66 18 chr11 83565580 83565638 -67217915 - L1MEd LINE L1 -3755 2374 2320 2140 199 63 30 chr11 83565728 83565795 -67217758 - MER74A LTR ERVL -12 546 483 1375 64 0 12 chr11 83565795 83565966 -67217587 - L1PA8 LINE L1 -3 6169 6001 2140 199 63 30 chr11 83565966 83566422 -67217131 - MER74A LTR ERVL -75 483 6 869 295 98 25 chr11 83566427 83566934 -67216619 - L2 LINE L2 -46 3267 2722 1935 125 11 0 chr11 83567205 83567477 -67216076 - AluSx SINE Alu -25 287 13 1242 120 73 16 chr11 83567579 83567770 -67215783 + AluJb SINE Alu 85 286 -26 23 105 0 0 chr11 83568003 83568089 -67215464 + AT_rich Low_complexity Low_complexity 1 86 0 180 103 0 103 chr11 83568103 83568142 -67215411 + MIR SINE MIR 166 200 -62 2001 129 3 7 chr11 83568323 83568609 -67214944 - AluJb SINE Alu -5 307 23 2088 215 80 33 chr11 83568927 83569439 -67214114 - MLT1E LTR MaLR -57 536 1 822 284 52 69 chr11 83569482 83569929 -67213624 - L1MEd LINE L1 -5664 455 17 180 315 41 14 chr11 83570168 83570241 -67213312 + L2 LINE L2 2896 2970 -343 607 318 70 33 chr11 83570262 83570621 -67212932 - L1MEd LINE L1 -5101 1018 647 560 203 34 0 chr11 83570625 83570743 -67212810 + L2 LINE L2 3192 3313 0 447 349 47 13 chr11 83570770 83570919 -67212634 + L2 LINE L2 3117 3270 -2 2088 111 14 3 chr11 83571351 83571639 -67211914 + AluSx SINE Alu 3 293 -19 235 0 57 0 chr11 83571749 83571784 -67211769 + (TA)n Simple_repeat Simple_repeat 2 38 0 958 123 84 45 chr11 83571784 83571963 -67211590 + MER21A LTR ERV1 25 210 -721 * 2120 168 31 28 chr11 83571959 83572383 -67211170 + MER21B LTR ERV1 435 859 -4 355 337 56 20 chr11 83572595 83572791 -67210762 + MIR SINE MIR 54 256 -6 21 0 0 0 chr11 83572850 83572871 -67210682 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr11 83573193 83573224 -67210329 + AT_rich Low_complexity Low_complexity 1 31 0 2019 186 33 9 chr11 83573306 83573726 -67209827 + L1 LINE L1 4125 4554 -1592 1096 169 0 0 chr11 83573733 83573911 -67209642 + FRAM SINE Alu 1 176 0 313 250 83 83 chr11 83573933 83574053 -67209500 + MIR SINE MIR 53 172 -90 699 188 8 0 chr11 83574053 83574170 -67209383 + FLAM_A SINE Alu 4 121 -12 1889 134 45 3 chr11 83574520 83574810 -67208743 + AluJo SINE Alu 1 302 -10 377 301 105 0 chr11 83574985 83575128 -67208425 + MIR SINE MIR 47 204 -58 427 337 46 40 chr11 83575521 83575824 -67207729 - L1M4 LINE L1 -1098 5048 4744 268 336 62 34 chr11 83576012 83576158 -67207395 + MIR3 SINE MIR 11 160 -48 293 314 58 6 chr11 83576294 83576450 -67207103 + L1MC/D LINE L1 5684 5848 -336 874 144 8 0 chr11 83576888 83577020 -67206533 + FLAM_C SINE Alu 1 133 0 364 179 51 0 chr11 83577227 83577305 -67206248 - Charlie1a DNA MER1_type -6 1449 1368 4943 167 35 52 chr11 83577316 83577438 -67206115 - Charlie1a DNA MER1_type -1607 1154 1031 2119 134 3 0 chr11 83577438 83577768 -67205785 - AluSx SINE Alu 0 331 1 4943 167 35 52 chr11 83577768 83578771 -67204782 - Charlie1a DNA MER1_type -1730 1031 47 775 203 0 0 chr11 83578884 83579017 -67204536 - FLAM_A SINE Alu 0 133 1 2827 13 0 0 chr11 83579134 83579445 -67204108 + AluYa5 SINE Alu 1 311 0 231 276 17 0 chr11 83579697 83579755 -67203798 - MIR SINE MIR -1 261 203 1170 131 51 55 chr11 83580322 83580558 -67202995 - Tigger2 DNA MER2_type 0 2718 2484 780 186 0 0 chr11 83580559 83580683 -67202870 + FLAM_C SINE Alu 1 124 -19 2520 87 44 3 chr11 83580683 83581050 -67202503 - Tigger2 DNA MER2_type -232 2486 2105 632 241 0 0 chr11 83581050 83581166 -67202387 + FLAM_C SINE Alu 1 116 -27 5056 123 30 29 chr11 83581188 83582021 -67201532 - Tigger2 DNA MER2_type -596 2122 1289 2017 172 87 35 chr11 83582021 83582481 -67201072 - LTR2B LTR ERV1 0 490 7 8721 110 17 2 chr11 83582486 83583755 -67199798 - Tigger2 DNA MER2_type -1428 1290 2 4778 115 31 56 chr11 83583969 83584501 -67199052 + MER4D LTR ERV1 25 529 -374 1984 140 0 32 chr11 83584501 83584809 -67198744 - AluSx SINE Alu -14 298 1 4778 115 31 56 chr11 83584809 83585148 -67198405 + MER4D LTR ERV1 529 875 -28 291 331 81 19 chr11 83585165 83585325 -67198228 + ERVL LTR ERVL 3489 3658 -2106 258 32 0 0 chr11 83585350 83585381 -67198172 + (TG)n Simple_repeat Simple_repeat 2 32 0 2071 124 3 0 chr11 83585381 83585664 -67197889 - AluSx SINE Alu -28 284 1 461 230 78 30 chr11 83586113 83586401 -67197152 + L1ME3 LINE L1 5667 5824 -297 2001 178 122 105 chr11 83586494 83587209 -67196344 + LTR8A LTR ERV1 1 727 0 774 169 0 44 chr11 83587235 83587371 -67196182 - FLAM_C SINE Alu -1 132 3 1940 153 3 3 chr11 83588101 83588401 -67195152 + AluSx SINE Alu 1 300 -12 2215 104 0 0 chr11 83588467 83588747 -67194806 + AluSx SINE Alu 2 281 -31 8320 75 3 3 chr11 83588838 83590798 -67192755 + L1PA7 LINE L1 4214 6154 0 289 214 0 0 chr11 83591053 83591109 -67192444 - MIR SINE MIR -111 151 96 344 275 94 19 chr11 83591182 83591342 -67192211 + L1ME LINE L1 5409 5580 -541 250 284 14 0 chr11 83591388 83591462 -67192091 + L1ME LINE L1 5789 5863 -258 3733 119 58 5 chr11 83591554 83592141 -67191412 - MER41B LTR ERV1 -17 618 1 1088 216 42 58 chr11 83592546 83592948 -67190605 + MLT1C LTR MaLR 8 467 0 259 249 80 27 chr11 83592949 83593083 -67190470 + L1ME LINE L1 5695 5829 -292 1120 178 20 5 chr11 83593327 83593529 -67190024 - MER50 LTR ERV1 0 734 530 4386 29 0 0 chr11 83593559 83594071 -67189482 - L1PA5 LINE L1 -1671 4475 3964 7178 37 15 5 chr11 83594071 83595715 -67187838 + L1PA5 LINE L1 4499 6154 0 350 257 21 14 chr11 83595809 83595949 -67187604 - MER50 LTR ERV1 -298 436 296 280 286 214 0 chr11 83596009 83596135 -67187418 - MER50 LTR ERV1 -572 162 10 1869 143 58 28 chr11 83596141 83596504 -67187049 - THE1C LTR MaLR -1 374 1 29 84 0 0 chr11 83597850 83597921 -67185632 + AT_rich Low_complexity Low_complexity 1 71 0 807 161 8 0 chr11 83597947 83598077 -67185476 + AluJo SINE Alu 4 134 -178 1819 152 19 29 chr11 83598087 83598402 -67185151 + AluJo SINE Alu 1 312 0 227 429 37 37 chr11 83598451 83598719 -67184834 + L2 LINE L2 2997 3264 -8 334 169 0 0 chr11 83599058 83599117 -67184436 - L1PA13 LINE L1 -2 6161 6103 382 257 37 9 chr11 83599244 83599358 -67184195 - MIR SINE MIR -63 145 49 2233 241 85 24 chr11 83600423 83601142 -67182411 + LTR41 LTR ERVL 1 763 -10 1851 162 0 13 chr11 83601147 83601449 -67182104 - AluJo SINE Alu -12 300 3 563 210 12 19 chr11 83601654 83601816 -67181737 - L1M4 LINE L1 -1006 5140 4980 263 163 23 0 chr11 83601844 83601887 -67181666 - MER57A LTR ERV1 -65 338 295 653 235 147 17 chr11 83601887 83602306 -67181247 - L1M4 LINE L1 -1149 4997 4383 182 194 0 0 chr11 83602362 83602393 -67181160 - L3 LINE CR1 -308 1269 1239 235 349 47 38 chr11 83602680 83602998 -67180555 - L3 LINE CR1 -711 866 546 23 33 0 0 chr11 83603113 83603143 -67180410 + AT_rich Low_complexity Low_complexity 1 30 0 377 332 61 69 chr11 83603176 83603423 -67180130 + MIR SINE MIR 12 256 -6 313 225 14 123 chr11 83603520 83603658 -67179895 - HAL1 LINE L1 0 2507 2385 566 133 67 15 chr11 83603679 83603814 -67179739 - L1MA10 LINE L1 -10 6324 6183 271 219 24 49 chr11 83603851 83603933 -67179620 - L1ME1 LINE L1 -169 5997 5918 * 2659 227 58 52 chr11 83603919 83604841 -67178712 - L1MEc LINE L1 -5318 924 35 251 27 0 27 chr11 83604859 83604896 -67178657 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 803 142 8 0 chr11 83604896 83605016 -67178537 - FLAM_C SINE Alu -22 121 1 22 0 0 0 chr11 83605019 83605041 -67178512 + AT_rich Low_complexity Low_complexity 1 22 0 548 259 61 50 chr11 83605041 83605319 -67178234 - HAL1 LINE L1 -156 2351 2071 1293 124 11 0 chr11 83605321 83605507 -67178046 + AluSg/x SINE Alu 116 303 -9 252 275 121 0 chr11 83605748 83605839 -67177714 + L1MC/D LINE L1 5615 5716 -2092 394 226 20 29 chr11 83605846 83605948 -67177605 + L1MC/D LINE L1 5683 5783 -2025 732 288 84 27 chr11 83605990 83606396 -67177157 - HAL1 LINE L1 -550 1957 1529 226 173 107 13 chr11 83606586 83606661 -67176892 - MER5C DNA MER1_type -90 234 153 346 238 152 7 chr11 83606818 83606969 -67176584 - L1MEc LINE L1 -4682 1714 1542 30115 40 1 2 chr11 83607973 83612467 -67171086 - L1PA5 LINE L1 0 6154 1663 2024 142 7 3 chr11 83612467 83612763 -67170790 - AluJb SINE Alu -15 297 1 191 86 0 29 chr11 83613672 83613707 -67169846 + (TA)n Simple_repeat Simple_repeat 2 35 0 10683 50 14 66 chr11 83613795 83615256 -67168297 - SVA Other Other 0 1386 1 198 71 0 0 chr11 83615266 83615294 -67168259 + (GGGAGA)n Simple_repeat Simple_repeat 1 28 0 795 302 52 43 chr11 83615668 83616244 -67167309 + HAL1b LINE L1 34 614 -734 1147 178 35 0 chr11 83616248 83616450 -67167103 - MER3 DNA MER1_type 0 209 1 927 112 65 53 chr11 83616529 83616698 -67166855 - THE1B LTR MaLR 0 364 194 271 241 29 80 chr11 83616766 83616903 -67166650 + L1MC4a LINE L1 4823 4952 -1194 2023 229 139 34 chr11 83617193 83617219 -67166334 + L1MC4a LINE L1 5255 5277 -2531 2125 138 3 0 chr11 83617219 83617530 -67166023 - AluSx SINE Alu 0 312 1 2023 229 139 34 chr11 83617530 83618328 -67165225 + L1MC4a LINE L1 5277 6166 -1642 262 268 51 38 chr11 83618349 83618506 -67165047 + L1MC4a LINE L1 6288 6446 -1362 1674 180 4 4 chr11 83618542 83618820 -67164733 - AluJb SINE Alu -26 286 9 1670 190 3 3 chr11 83618842 83619132 -67164421 - AluJb SINE Alu -22 290 1 2321 192 123 183 chr11 83619141 83619907 -67163646 + L1MC4a LINE L1 6479 7289 -753 1167 186 4 26 chr11 83619907 83620133 -67163420 + AluJb SINE Alu 86 306 -6 2321 192 123 183 chr11 83620133 83620663 -67162890 + L1MC4a LINE L1 7289 7899 -143 822 134 0 30 chr11 83620663 83620797 -67162756 - FLAM_C SINE Alu -3 130 1 2321 192 123 183 chr11 83620797 83620906 -67162647 + L1MC4a LINE L1 7899 8013 -29 23 0 0 0 chr11 83620924 83620947 -67162606 + AT_rich Low_complexity Low_complexity 1 23 0 232 316 119 37 chr11 83621184 83621402 -67162151 + L2 LINE L2 3078 3313 0 399 41 0 0 chr11 83621526 83621575 -67161978 + (CA)n Simple_repeat Simple_repeat 2 50 0 185 262 0 0 chr11 83621873 83621915 -67161638 - L2 LINE L2 -4 3309 3268 43 20 0 0 chr11 83621971 83622021 -67161532 + AT_rich Low_complexity Low_complexity 1 50 0 333 167 17 0 chr11 83622028 83622088 -67161465 - L1P LINE L1 -1394 5454 5394 11116 202 31 21 chr11 83622089 83622412 -67161141 - L1 LINE L1 -1418 5430 5112 192 77 0 0 chr11 83622412 83622438 -67161115 + (TTA)n Simple_repeat Simple_repeat 2 27 0 11116 202 31 21 chr11 83622438 83626402 -67157151 - L1 LINE L1 -1736 5112 1067 226 321 64 0 chr11 83626555 83626664 -67156889 - L1 LINE L1 -6069 780 665 367 319 26 26 chr11 83626803 83626919 -67156634 - L1 LINE L1 -6069 780 665 1286 311 19 5 chr11 83627264 83627695 -67155858 - L1 LINE L1 -6399 450 14 339 200 0 0 chr11 83627786 83627846 -67155707 - MER74B LTR ERVL -96 526 467 489 32 0 16 chr11 83628727 83628789 -67154764 + (TG)n Simple_repeat Simple_repeat 2 62 0 464 264 115 20 chr11 83629407 83629555 -67153998 - MIR SINE MIR -76 186 25 549 243 20 40 chr11 83630717 83630869 -67152684 - L2 LINE L2 -451 2863 2715 1209 170 9 28 chr11 83630972 83631190 -67152363 - AluJb SINE Alu -98 214 1 303 365 43 0 chr11 83632106 83632221 -67151332 - L2 LINE L2 -2 3270 3151 372 208 64 52 chr11 83632475 83632564 -67150989 + L1MC4 LINE L1 7823 7909 -133 261 0 0 0 chr11 83632564 83632593 -67150960 + (CA)n Simple_repeat Simple_repeat 2 30 0 372 208 64 52 chr11 83632593 83632676 -67150877 + L1MC4 LINE L1 7909 7997 -45 2400 92 0 0 chr11 83632676 83632982 -67150571 - AluSg SINE Alu -4 306 1 279 164 173 9 chr11 83633165 83633275 -67150278 - Charlie7 DNA MER1_type -47 2565 2438 2324 110 3 0 chr11 83633297 83633606 -67149947 - AluSx SINE Alu -2 310 1 257 263 40 0 chr11 83633608 83633684 -67149869 - Charlie7 DNA MER1_type -2522 90 12 2281 116 3 0 chr11 83633957 83634258 -67149295 + AluSx SINE Alu 1 302 -10 273 135 0 0 chr11 83634311 83634363 -67149190 - L1MC4 LINE L1 0 8042 7991 973 92 0 0 chr11 83634365 83634485 -67149068 + AluSg SINE Alu 1 120 -190 2428 86 3 0 chr11 83634657 83634958 -67148595 - AluSp SINE Alu -11 302 1 355 349 96 78 chr11 83635028 83635303 -67148250 + L2 LINE L2 2859 3145 -127 1891 174 7 3 chr11 83635303 83635613 -67147940 - AluJb SINE Alu -1 311 1 355 349 96 78 chr11 83635613 83635735 -67147818 + L2 LINE L2 3145 3263 -9 3209 176 55 36 chr11 83635750 83636078 -67147475 + L1MB7 LINE L1 5409 5729 -455 1541 155 9 133 chr11 83636078 83636505 -67147048 - MLT1A2 LTR MaLR 0 374 1 3209 176 55 36 chr11 83636505 83636926 -67146627 + L1MB7 LINE L1 5729 6172 -12 353 338 114 44 chr11 83637697 83637969 -67145584 + L2 LINE L2 2963 3253 -19 2120 129 3 3 chr11 83638160 83638455 -67145098 - AluSx SINE Alu -17 295 1 29 0 0 0 chr11 83638649 83638678 -67144875 + AT_rich Low_complexity Low_complexity 1 29 0 833 144 0 0 chr11 83638690 83638808 -67144745 - FLAM_C SINE Alu -15 118 1 2351 106 0 0 chr11 83638896 83639199 -67144354 - AluSq SINE Alu -10 303 1 777 93 429 0 chr11 83640146 83640252 -67143301 - MER30 DNA MER1_type 0 230 171 2426 99 0 3 chr11 83640252 83640566 -67142987 - AluSq SINE Alu 0 313 1 777 93 429 0 chr11 83640566 83640620 -67142933 - MER30 DNA MER1_type -59 171 1 675 161 91 112 chr11 83640740 83640841 -67142712 - MER33 DNA MER1_type -2274 311 209 2197 103 0 0 chr11 83640841 83641123 -67142430 + AluSc SINE Alu 1 282 -27 675 161 91 112 chr11 83641123 83641306 -67142247 - MER33 DNA MER1_type -2376 209 33 2066 200 34 78 chr11 83641856 83642497 -67141056 + L1MC4 LINE L1 6461 7073 -969 613 222 80 0 chr11 83642544 83642706 -67140847 + L1MC4a LINE L1 7159 7333 -475 1137 152 0 11 chr11 83642751 83642929 -67140624 - AluSp SINE Alu -4 309 134 2232 93 13 20 chr11 83642929 83643231 -67140322 - AluSx SINE Alu -12 300 1 251 56 28 0 chr11 83643246 83643282 -67140271 - MER4D LTR ERV1 -37 866 830 1860 147 70 3 chr11 83643288 83643615 -67139938 - MER41E LTR ERV1 0 512 164 381 187 66 11 chr11 83643813 83643904 -67139649 + LTR25 LTR ERV1 261 356 -438 441 171 67 9 chr11 83644094 83644199 -67139354 + LTR25 LTR ERV1 664 774 -20 1031 99 7 0 chr11 83644221 83644372 -67139181 - MER41E LTR ERV1 -343 169 18 350 186 57 0 chr11 83644459 83644529 -67139024 - MER4E LTR ERV1 -600 179 106 42187 37 4 0 chr11 83644546 83650668 -67132885 + L1PA4 LINE L1 6 6152 -3 1186 149 34 45 chr11 83650707 83651009 -67132544 - MER4D LTR ERV1 -628 295 1 1151 229 70 8 chr11 83651012 83651400 -67132153 + L1MC4 LINE L1 7413 7824 -218 2172 137 52 20 chr11 83651459 83651905 -67131648 - L1MB7 LINE L1 -43 6141 5682 2387 77 3 0 chr11 83651972 83652269 -67131284 + AluSc SINE Alu 1 298 -11 2118 135 69 84 chr11 83652277 83652811 -67130742 - LTR49 LTR ERV1 -69 526 1 1859 143 87 13 chr11 83652812 83653264 -67130289 - L1MB7 LINE L1 -501 5677 5188 550 179 205 0 chr11 83653849 83654005 -67129548 + MLT1D LTR MaLR 301 488 -17 2349 207 46 7 chr11 83654392 83654958 -67128595 - L1MB7 LINE L1 -943 5203 4616 265 350 65 38 chr11 83655271 83655457 -67128096 - L2 LINE L2 -275 3038 2848 309 240 62 0 chr11 83655525 83655621 -67127932 - L1MC4 LINE L1 -216 7826 7725 374 143 0 0 chr11 83655621 83655703 -67127850 + AluS SINE Alu 227 280 -21 394 282 68 26 chr11 83655920 83656037 -67127516 + L2 LINE L2 3185 3306 -7 180 111 0 0 chr11 83656124 83656151 -67127402 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2059 148 0 22 chr11 83656581 83656898 -67126655 - AluJb SINE Alu -2 310 1 23 0 0 0 chr11 83657081 83657104 -67126449 + AT_rich Low_complexity Low_complexity 1 23 0 391 288 69 25 chr11 83657711 83657871 -67125682 - MIR SINE MIR -10 252 86 7282 161 153 22 chr11 83658342 83659893 -67123660 + MER52A LTR ERV1 1 1755 0 1423 128 0 24 chr11 83660166 83660377 -67123176 + AluSg/x SINE Alu 86 291 -21 903 200 6 11 chr11 83660386 83660566 -67122987 - MER58A DNA MER1_type 0 224 46 1938 153 7 0 chr11 83660569 83660863 -67122690 + AluJo SINE Alu 1 296 -16 1739 163 13 20 chr11 83661106 83661412 -67122141 + AluJb SINE Alu 1 304 -8 275 298 193 9 chr11 83661468 83661582 -67121971 + MIR SINE MIR 54 188 -74 303 390 41 14 chr11 83661589 83661735 -67121818 - L2 LINE L2 0 3272 3123 255 284 9 9 chr11 83662071 83662086 -67121467 - L1MA10 LINE L1 -2 6332 6318 2712 223 81 33 chr11 83662086 83662923 -67120630 - L1ME2 LINE L1 -9 6155 5360 2482 76 0 0 chr11 83662923 83663226 -67120327 - AluSc SINE Alu -6 303 1 2712 223 81 33 chr11 83663226 83664033 -67119520 - L1ME2 LINE L1 -804 5360 4365 1804 164 14 0 chr11 83664033 83664326 -67119227 - AluJb SINE Alu -15 297 1 2712 223 81 33 chr11 83664326 83664466 -67119087 - L1ME2 LINE L1 -1799 4365 4233 2146 90 17 10 chr11 83664508 83664798 -67118755 - AluSg SINE Alu -16 294 3 220 304 0 14 chr11 83664840 83664909 -67118644 - L2 LINE L2 -5 3267 3200 250 310 207 0 chr11 83665109 83665225 -67118328 - MIR3 SINE MIR -9 199 60 357 359 53 0 chr11 83665313 83665444 -67118109 - L2 LINE L2 -19 3253 3116 1153 165 138 0 chr11 83665856 83666074 -67117479 - AluJb SINE Alu -23 289 42 271 315 94 105 chr11 83666891 83667177 -67116376 - L2 LINE L2 -4 3268 2986 242 265 12 12 chr11 83667260 83667343 -67116210 - MIR SINE MIR -6 256 174 2238 106 0 3 chr11 83667500 83667803 -67115750 + AluSx SINE Alu 6 307 -5 662 331 122 50 chr11 83667808 83668368 -67115185 - L2 LINE L2 -557 2757 2110 2012 142 3 10 chr11 83668368 83668664 -67114889 + AluJb SINE Alu 1 294 -18 662 331 122 50 chr11 83668664 83668984 -67114569 - L2 LINE L2 -1204 2110 1814 2389 121 5 18 chr11 83669032 83669412 -67114141 - THE1C LTR MaLR 0 375 1 632 234 98 11 chr11 83669547 83669731 -67113822 + MIR SINE MIR 12 211 -51 25 0 0 0 chr11 83670010 83670035 -67113518 + AT_rich Low_complexity Low_complexity 1 25 0 205 326 128 74 chr11 83670076 83670413 -67113140 - L2 LINE L2 -91 3181 2827 361 253 247 11 chr11 83670711 83670897 -67112656 - MIR SINE MIR -12 250 21 250 200 0 40 chr11 83671427 83671477 -67112076 - Charlie8 DNA MER1_type -1002 1415 1368 576 238 104 16 chr11 83671784 83671977 -67111576 - MIR SINE MIR -18 244 35 2517 93 0 0 chr11 83672244 83672556 -67110997 + AluSx SINE Alu 1 312 0 1376 153 60 71 chr11 83672656 83672924 -67110629 + AluJo SINE Alu 1 265 -47 21 0 0 0 chr11 83672930 83672951 -67110602 + AT_rich Low_complexity Low_complexity 1 21 0 245 321 12 12 chr11 83673368 83673452 -67110101 - L2 LINE L2 0 3313 3230 370 255 32 11 chr11 83673471 83673565 -67109988 + MIR SINE MIR 37 132 -130 1498 176 13 36 chr11 83673585 83673886 -67109667 - AluJb SINE Alu -18 294 1 415 207 27 36 chr11 83673888 83673999 -67109554 - L2 LINE L2 -12 3301 3192 280 220 220 0 chr11 83674004 83674095 -67109458 + MIR SINE MIR 152 262 0 2322 113 63 6 chr11 83674352 83674671 -67108882 - MER1B DNA MER1_type 0 337 1 2107 128 7 0 chr11 83674843 83675140 -67108413 - AluSx SINE Alu -13 299 1 921 154 0 0 chr11 83675140 83675276 -67108277 - AluSq/x SINE Alu -177 136 1 196 388 84 13 chr11 83675514 83675751 -67107802 - L2 LINE L2 -466 2848 2595 918 272 60 8 chr11 83675883 83676151 -67107402 + L2 LINE L2 2840 3121 -192 972 297 100 38 chr11 83676599 83677109 -67106444 + L2 LINE L2 2217 2694 -620 2175 101 3 7 chr11 83677109 83677430 -67106123 - AluSq SINE Alu 0 320 1 2371 108 0 0 chr11 83677430 83677736 -67105817 - AluSx SINE Alu -6 306 1 972 297 100 38 chr11 83677736 83677825 -67105728 + L2 LINE L2 2693 2855 -459 394 332 27 90 chr11 83677892 83678148 -67105405 + L2 LINE L2 2962 3201 -71 1234 172 13 9 chr11 83678345 83678572 -67104981 + AluJo SINE Alu 82 309 -3 341 247 73 60 chr11 83678660 83678810 -67104743 + L1ME3A LINE L1 5921 6072 -98 191 238 0 24 chr11 83680026 83680068 -67103485 + L2 LINE L2 3255 3295 -18 4449 182 95 40 chr11 83680102 83681952 -67101601 - L1MD1 LINE L1 0 6242 4220 2160 118 0 13 chr11 83681952 83682266 -67101287 - AluSg SINE Alu 0 310 1 4449 182 95 40 chr11 83682266 83682519 -67101034 - L1MD1 LINE L1 -2022 4220 3982 884 187 39 87 chr11 83682525 83682755 -67100798 - MLT1B LTR MaLR 0 390 172 * 1257 159 9 9 chr11 83682722 83682936 -67100617 - MLT1B LTR MaLR -161 229 16 2725 228 40 57 chr11 83682999 83683473 -67100080 - L1MDa LINE L1 -2169 4371 3890 1900 121 31 66 chr11 83683473 83683854 -67099699 + L1MB3 LINE L1 5812 6179 -4 2725 228 40 57 chr11 83683854 83684800 -67098753 - L1MDa LINE L1 -2650 3890 3014 601 155 31 0 chr11 83684800 83684897 -67098656 - MER77 LTR ERV1 0 605 506 1184 183 8 84 chr11 83684897 83685148 -67098405 - MER77 LTR ERV1 -373 232 1 4506 216 50 59 chr11 83685148 83685741 -67097812 - L1MDa LINE L1 -3522 3018 2421 2082 59 8 0 chr11 83685741 83685995 -67097558 - AluY SINE Alu -5 306 51 4506 216 50 59 chr11 83685995 83686153 -67097400 - L1MDa LINE L1 -4119 2421 2263 2230 183 33 22 chr11 83686153 83686613 -67096940 - MLT1C LTR MaLR 0 467 3 4506 216 50 59 chr11 83686613 83686650 -67096903 - L1MDa LINE L1 -4277 2263 2227 355 38 38 0 chr11 83686650 83686703 -67096850 + (TA)n Simple_repeat Simple_repeat 2 56 0 2403 81 3 0 chr11 83686703 83686999 -67096554 - AluSq SINE Alu -16 297 1 4506 216 50 59 chr11 83686999 83687551 -67096002 - L1MDa LINE L1 -4312 2228 1713 1830 127 10 40 chr11 83687551 83687850 -67095703 + AluJo SINE Alu 14 303 -9 4506 216 50 59 chr11 83687850 83688078 -67095475 - L1MDa LINE L1 -4827 1713 1485 1769 245 109 14 chr11 83688077 83688571 -67094982 - L1MDa LINE L1 -5586 954 414 * 1261 107 112 0 chr11 83688573 83688779 -67094774 + L1MA7 LINE L1 6061 6289 -2 1161 178 9 19 chr11 83688791 83689004 -67094549 - L1MDa LINE L1 -6329 211 1 185 269 90 51 chr11 83689239 83689317 -67094236 + L2 LINE L2 3137 3217 -55 443 179 11 11 chr11 83689382 83689477 -67094076 + L1ME1 LINE L1 37 131 -5988 1746 176 0 14 chr11 83689484 83689774 -67093779 + AluJo SINE Alu 1 286 -26 2314 143 71 2 chr11 83689794 83690187 -67093366 - MSTA LTR MaLR 0 428 9 1572 200 3 7 chr11 83690238 83690533 -67093020 + AluJo SINE Alu 1 294 -18 537 281 27 14 chr11 83690692 83690838 -67092715 + L1ME1 LINE L1 329 476 -5643 955 185 52 12 chr11 83690852 83690874 -67092679 + AluJo SINE Alu 102 122 -190 315 0 0 0 chr11 83690874 83690909 -67092644 + (TAA)n Simple_repeat Simple_repeat 2 36 0 955 185 52 12 chr11 83690909 83691059 -67092494 + AluJo SINE Alu 122 281 -31 1930 234 74 55 chr11 83691066 83691868 -67091685 + HAL1 LINE L1 1072 1888 -619 22 35 0 0 chr11 83692422 83692451 -67091102 + AT_rich Low_complexity Low_complexity 1 29 0 390 212 122 90 chr11 83692521 83692776 -67090777 + L1ME1 LINE L1 3859 4121 -2008 3269 192 92 32 chr11 83692780 83692848 -67090705 + L1ME1 LINE L1 4186 4248 -1901 2406 92 0 0 chr11 83692848 83693152 -67090401 + AluSc SINE Alu 1 304 -5 3269 192 92 32 chr11 83693152 83694726 -67088827 + L1ME1 LINE L1 4248 5926 -223 462 172 126 40 chr11 83694714 83694865 -67088688 + L1MA10 LINE L1 6168 6331 -3 * 460 264 132 32 chr11 83694991 83695211 -67088342 + L2 LINE L2 3072 3313 0 1070 199 0 6 chr11 83695476 83695652 -67087901 + FAM SINE Alu 1 175 0 1655 194 45 65 chr11 83696384 83696536 -67087017 + L1MC5 LINE L1 7330 7483 -478 2422 88 3 0 chr11 83696536 83696841 -67086712 + AluSx SINE Alu 1 306 -6 1655 194 45 65 chr11 83696841 83697215 -67086338 + L1MC5 LINE L1 7483 7846 -115 2014 198 102 0 chr11 83697584 83698140 -67085413 + L1 LINE L1 2838 3450 -2696 1202 212 22 4 chr11 83698158 83698432 -67085121 + L1 LINE L1 4465 4743 -1403 8383 102 38 26 chr11 83698457 83698652 -67084901 + Tigger1 DNA MER2_type 34 225 -2193 1827 152 30 3 chr11 83698652 83698949 -67084604 - AluSx SINE Alu -7 305 1 8383 102 38 26 chr11 83698949 83699888 -67083665 + Tigger1 DNA MER2_type 225 1186 -1232 2431 68 0 0 chr11 83699888 83700180 -67083373 + AluSg SINE Alu 1 292 -18 8383 102 38 26 chr11 83700180 83700296 -67083257 + Tigger1 DNA MER2_type 1186 1299 -1119 431 289 186 10 chr11 83700579 83700783 -67082770 + MIR SINE MIR 12 251 -11 335 66 0 0 chr11 83703547 83703639 -67079914 + AluSc SINE Alu 252 336 0 249 33 0 0 chr11 83704305 83704335 -67079218 + (A)n Simple_repeat Simple_repeat 1 30 0 573 215 81 81 chr11 83705330 83705400 -67078153 + MER58C DNA MER1_type 1 70 -2350 180 0 0 0 chr11 83705400 83705420 -67078133 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 573 215 81 81 chr11 83705420 83705441 -67078112 + MER58C DNA MER1_type 70 90 -2330 1812 110 48 31 chr11 83705441 83705733 -67077820 - AluSx SINE Alu -15 297 1 573 215 81 81 chr11 83705733 83705826 -67077727 + MER58C DNA MER1_type 89 186 -29 23 0 0 0 chr11 83706791 83706814 -67076739 + AT_rich Low_complexity Low_complexity 1 23 0 506 290 113 65 chr11 83706886 83707072 -67076481 + MER91A DNA MER1_type 1 195 -1 23 54 0 0 chr11 83707186 83707223 -67076330 + AT_rich Low_complexity Low_complexity 1 37 0 349 300 103 77 chr11 83707960 83708260 -67075293 - L2 LINE L2 -18 3254 2947 1708 156 35 10 chr11 83708343 83708632 -67074921 + AluJo SINE Alu 3 298 -14 363 275 84 56 chr11 83708765 83708922 -67074631 - L2 LINE L2 -923 2391 2221 2296 86 10 17 chr11 83708922 83709224 -67074329 + AluSg SINE Alu 3 302 -8 363 275 84 56 chr11 83709224 83709353 -67074200 - L2 LINE L2 -1093 2221 2097 204 314 104 28 chr11 83709625 83709732 -67073821 + MIR SINE MIR 35 147 -61 254 29 29 0 chr11 83711499 83711534 -67072019 + (GA)n Simple_repeat Simple_repeat 1 36 0 264 178 200 11 chr11 83711661 83711751 -67071802 + MER107 DNA MER1_type 69 175 -22 387 0 0 0 chr11 83711810 83711853 -67071700 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 851 208 0 0 chr11 83711854 83712003 -67071550 - AluJb SINE Alu -44 268 120 2659 169 73 51 chr11 83712131 83712556 -67070997 + HERVL74 LTR ERVL 1041 1486 -4199 1829 164 0 0 chr11 83712556 83712836 -67070717 + AluJb SINE Alu 5 284 -28 2659 169 73 51 chr11 83712836 83713057 -67070496 + HERVL74 LTR ERVL 1486 1701 -3984 215 202 11 0 chr11 83713057 83713146 -67070407 + (TA)n Simple_repeat Simple_repeat 1 90 0 1272 207 94 16 chr11 83713183 83713492 -67070061 + HERVL74 LTR ERVL 1708 2040 -3645 804 102 0 0 chr11 83713492 83713590 -67069963 - AluSq SINE Alu -103 210 113 1700 110 0 4 chr11 83714261 83714497 -67069056 + AluSq SINE Alu 1 235 -78 201 245 20 0 chr11 83714499 83714548 -67069005 - L2 LINE L2 -291 2981 2932 373 270 95 29 chr11 83714736 83714873 -67068680 - MIR SINE MIR -22 240 95 221 175 0 0 chr11 83714964 83715004 -67068549 - L2 LINE L2 -233 3039 3000 205 306 276 0 chr11 83715416 83715514 -67068039 - MIR SINE MIR -116 146 22 220 333 46 0 chr11 83715531 83715639 -67067914 - L2 LINE L2 -1 3271 3159 202 206 0 0 chr11 83715790 83715824 -67067729 - L2 LINE L2 -20 3252 3219 444 233 273 28 chr11 83715958 83716134 -67067419 - MIR SINE MIR -2 260 42 344 355 141 21 chr11 83716171 83716461 -67067092 - L2 LINE L2 -49 3223 2899 268 307 200 24 chr11 83716498 83716918 -67066635 - L2 LINE L2 -558 2756 2263 1805 182 3 6 chr11 83717014 83717327 -67066226 + AluJb SINE Alu 1 312 0 252 0 0 0 chr11 83717429 83717457 -67066096 + (T)n Simple_repeat Simple_repeat 1 28 0 3113 61 0 5 chr11 83717460 83717837 -67065716 - L1PA6 LINE L1 -1 6153 5779 225 153 0 85 chr11 83717992 83718051 -67065502 - AluYb8 SINE Alu -33 275 222 682 152 0 0 chr11 83718075 83718174 -67065379 - AluJ/FLAM SINE Alu -213 99 1 264 271 67 35 chr11 83718259 83718437 -67065116 - MIR SINE MIR -62 146 3 259 307 85 34 chr11 83718827 83719003 -67064550 - MIR3 SINE MIR -1 207 23 320 252 69 8 chr11 83719188 83719319 -67064234 - MER112 DNA MER1_type -6 254 116 2220 117 0 9 chr11 83719386 83719702 -67063851 + AluSq SINE Alu 1 313 0 477 231 44 44 chr11 83719817 83719977 -67063576 + L1MC4 LINE L1 7860 8019 -23 267 103 0 0 chr11 83719982 83720021 -67063532 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 541 293 11 40 chr11 83720930 83721104 -67062449 - MER5B DNA MER1_type -8 170 2 2306 91 0 3 chr11 83721799 83722097 -67061456 + AluSg SINE Alu 1 297 -13 404 234 122 82 chr11 83722578 83722835 -67060718 + MLT1J2 LTR MaLR 15 335 -176 980 200 75 0 chr11 83722835 83723035 -67060518 - MER20B DNA MER1_type -4 215 1 404 234 122 82 chr11 83723035 83723160 -67060393 + MLT1J2 LTR MaLR 335 453 -58 1199 203 156 3 chr11 83723253 83723548 -67060005 - MLT1A1 LTR MaLR 0 365 26 2368 61 0 3 chr11 83723548 83723842 -67059711 + AluY SINE Alu 1 293 -18 1075 189 163 123 chr11 83724232 83724718 -67058835 + MLT1D LTR MaLR 1 505 0 3674 110 35 2 chr11 83724729 83725239 -67058314 + MER1A DNA MER1_type 1 527 0 1647 120 64 109 chr11 83725537 83725930 -67057623 - THE1C LTR MaLR 0 375 1 186 222 127 0 chr11 83725930 83725993 -67057560 - MIR SINE MIR -80 128 58 248 260 52 0 chr11 83727089 83727166 -67056387 + MIR SINE MIR 113 193 -69 1980 129 0 7 chr11 83727456 83727751 -67055802 - AluSx SINE Alu -19 293 1 240 202 64 0 chr11 83727751 83727860 -67055693 + (TA)n Simple_repeat Simple_repeat 1 116 0 813 178 0 15 chr11 83727974 83728109 -67055444 + FLAM_C SINE Alu 1 133 0 332 262 29 115 chr11 83728239 83728518 -67055035 + L1ME1 LINE L1 3711 3965 -2181 338 320 40 40 chr11 83728520 83728670 -67054883 + L1ME1 LINE L1 4042 4191 -1955 661 228 48 35 chr11 83728684 83728912 -67054641 - MER20B DNA MER1_type 0 783 553 233 213 27 67 chr11 83728906 83728981 -67054572 - MER20B DNA MER1_type -710 73 2 * 849 135 8 0 chr11 83729102 83729235 -67054318 + AluJb SINE Alu 44 177 -135 1989 125 3 28 chr11 83729377 83729697 -67053856 - AluJo SINE Alu 0 312 1 1202 118 0 0 chr11 83729829 83729999 -67053554 - AluSg/x SINE Alu -17 293 124 983 100 0 56 chr11 83729999 83730132 -67053421 + AluSp/q SINE Alu 163 287 -26 548 165 10 0 chr11 83730132 83730229 -67053324 + L1MA8 LINE L1 6188 6285 -6 983 100 0 56 chr11 83730229 83730255 -67053298 + AluSp/q SINE Alu 287 313 0 415 331 99 27 chr11 83730261 83730783 -67052770 + L1ME1 LINE L1 4540 5023 -1143 1794 163 7 0 chr11 83730783 83731072 -67052481 - AluJb SINE Alu -21 291 1 415 331 99 27 chr11 83731072 83731787 -67051766 + L1ME1 LINE L1 5023 5895 -271 820 117 8 0 chr11 83732337 83732465 -67051088 + MER41B LTR ERV1 1 129 -506 2797 119 16 7 chr11 83732470 83732905 -67050648 - MER83 LTR ERV1 -9 439 1 3151 140 2 25 chr11 83732905 83733256 -67050297 + MER41B LTR ERV1 125 462 -173 1918 114 0 32 chr11 83733256 83733564 -67049989 + AluSq SINE Alu 5 302 -11 3151 140 2 25 chr11 83733564 83733735 -67049818 + MER41B LTR ERV1 462 635 0 2113 134 0 0 chr11 83734456 83734769 -67048784 - AluSq SINE Alu 0 313 1 3452 156 22 90 chr11 83735833 83736303 -67047250 - LTR8 LTR ERV1 0 691 289 1895 162 0 0 chr11 83736303 83736606 -67046947 - AluSx SINE Alu -9 303 1 3452 156 22 90 chr11 83736606 83736877 -67046676 - LTR8 LTR ERV1 -402 289 1 794 141 0 0 chr11 83737269 83737397 -67046156 + L1MB5 LINE L1 5564 5691 -493 1212 167 0 24 chr11 83737399 83737609 -67045944 + AluJb SINE Alu 86 290 -22 1800 131 37 65 chr11 83737610 83737813 -67045740 + L1MB5 LINE L1 5684 5891 -283 1509 164 4 0 chr11 83737813 83738057 -67045496 + AluJo SINE Alu 36 280 -32 186 43 0 0 chr11 83738064 83738087 -67045466 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 1800 131 37 65 chr11 83738087 83738257 -67045296 + L1MB5 LINE L1 5897 6054 -120 731 108 9 0 chr11 83738426 83738537 -67045016 + L1MB7 LINE L1 6056 6167 -17 1745 253 30 31 chr11 83738545 83739302 -67044251 - L1MC4a LINE L1 -1692 6116 5306 303 95 0 0 chr11 83739306 83739348 -67044205 + MLT1A1 LTR MaLR 324 365 0 717 321 46 25 chr11 83739350 83739410 -67044143 - L1MC4a LINE L1 -1117 5029 4972 2466 143 53 7 chr11 83739410 83739823 -67043730 + MSTB1 LTR MaLR 1 432 0 717 321 46 25 chr11 83739823 83740329 -67043224 - L1MC4a LINE L1 -1174 4972 4451 1955 126 24 3 chr11 83740329 83740623 -67042930 + AluSx SINE Alu 1 300 -12 672 296 23 4 chr11 83740638 83740898 -67042655 - L1MC4a LINE L1 -1807 4339 4075 940 191 27 0 chr11 83740907 83741095 -67042458 - AluJb SINE Alu 0 312 120 342 0 0 0 chr11 83741540 83741578 -67041975 + (TG)n Simple_repeat Simple_repeat 2 39 0 275 272 131 37 chr11 83741740 83741896 -67041657 - MIR SINE MIR -70 138 17 332 280 35 35 chr11 83743037 83743180 -67040373 + MIR SINE MIR 61 203 -59 1837 203 128 18 chr11 83744544 83744997 -67038556 - MLT1D LTR MaLR -2 503 1 195 326 79 11 chr11 83745346 83745435 -67038118 - MIR SINE MIR -51 211 117 261 241 0 0 chr11 83745502 83745556 -67037997 - MIR SINE MIR -114 148 95 309 194 42 0 chr11 83747047 83747119 -67036434 + MER81 DNA DNA 1 75 -39 184 359 43 27 chr11 83748895 83749151 -67034402 + L2 LINE L2 2632 2891 -423 231 259 35 12 chr11 83749338 83749423 -67034130 - MIR SINE MIR -73 135 49 724 240 61 32 chr11 83749591 83749837 -67033716 - L1ME3A LINE L1 -2 6168 5916 4994 120 18 42 chr11 83749837 83749988 -67033565 - L1MA8 LINE L1 -3 6288 6135 1858 121 43 0 chr11 83749988 83750270 -67033283 + AluSx SINE Alu 1 294 -18 4994 120 18 42 chr11 83750270 83750959 -67032594 - L1MA8 LINE L1 -156 6135 5468 2083 105 0 20 chr11 83750983 83751288 -67032265 + AluSx SINE Alu 1 299 -13 5692 128 20 32 chr11 83751340 83751431 -67032122 - L1MA8 LINE L1 -745 5401 5310 2042 88 54 3 chr11 83751431 83751725 -67031828 - AluSq SINE Alu -4 309 1 5692 128 20 32 chr11 83751725 83752865 -67030688 - L1MA8 LINE L1 -836 5310 4271 947 123 15 238 chr11 83752865 83753060 -67030493 - L1MA8 LINE L1 -2200 3946 3709 207 0 0 0 chr11 83753060 83753083 -67030470 + (TTA)n Simple_repeat Simple_repeat 2 24 0 947 123 15 238 chr11 83753083 83753104 -67030449 - L1MA8 LINE L1 -2437 3709 3685 337 193 48 36 chr11 83753104 83753187 -67030366 - AluJo SINE Alu -103 199 116 947 123 15 238 chr11 83753187 83753278 -67030275 - L1MA8 LINE L1 -2461 3685 3643 1430 261 107 22 chr11 83753279 83753694 -67029859 - L1ME3A LINE L1 -229 5941 5468 354 23 0 0 chr11 83753694 83753737 -67029816 + (TG)n Simple_repeat Simple_repeat 2 44 0 1430 261 107 22 chr11 83753737 83753864 -67029689 - L1ME3A LINE L1 -702 5468 5353 1044 223 113 14 chr11 83753858 83754221 -67029332 - L1ME3A LINE L1 -1086 5060 4662 * 182 128 77 0 chr11 83754339 83754378 -67029175 - MIR SINE MIR -86 122 81 262 274 10 23 chr11 83754728 83754816 -67028737 - MIR SINE MIR -108 100 33 265 237 26 13 chr11 83755160 83755236 -67028317 + L2 LINE L2 2916 2992 -280 191 270 95 56 chr11 83756711 83756837 -67026716 + MIR3 SINE MIR 71 201 -7 209 182 0 45 chr11 83757025 83757069 -67026484 - MIR SINE MIR -91 117 80 296 281 83 0 chr11 83757365 83757461 -67026092 + MIR SINE MIR 38 141 -67 279 304 58 16 chr11 83757656 83757800 -67025753 - MIR3 SINE MIR -73 135 3 288 307 86 7 chr11 83758567 83758707 -67024846 + MIR SINE MIR 21 171 -91 222 322 42 8 chr11 83759111 83759229 -67024324 + MIR SINE MIR 29 150 -58 371 227 101 25 chr11 83759426 83759545 -67024008 + MIR SINE MIR 134 261 -1 189 266 47 0 chr11 83760262 83760326 -67023227 - MIR SINE MIR -80 128 62 411 237 51 17 chr11 83761460 83761578 -67021975 + MIR SINE MIR 32 153 -109 1441 106 0 5 chr11 83763581 83763779 -67019774 + AluSg/x SINE Alu 79 275 -35 209 30 61 0 chr11 83763785 83763818 -67019735 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 722 197 34 0 chr11 83763833 83763980 -67019573 + MIR SINE MIR 28 179 -83 234 186 0 0 chr11 83763974 83764017 -67019536 + L2 LINE L2 3213 3255 -17 * 271 269 56 41 chr11 83764384 83764547 -67019006 + MIR SINE MIR 20 184 -56 335 248 68 26 chr11 83765327 83765444 -67018109 + MIR SINE MIR 63 184 -78 255 338 114 67 chr11 83765775 83765848 -67017705 - MIR SINE MIR -23 239 171 1830 158 13 0 chr11 83765848 83766152 -67017401 + AluJo SINE Alu 1 308 -4 255 338 114 67 chr11 83766152 83766288 -67017265 - MIR SINE MIR -91 171 20 1944 110 42 29 chr11 83766605 83766914 -67016639 + AluSq SINE Alu 1 313 0 296 326 46 0 chr11 83766917 83767088 -67016465 + MIR SINE MIR 51 230 -32 192 313 140 27 chr11 83768048 83768198 -67015355 + MIR3 SINE MIR 21 187 -21 252 254 15 0 chr11 83768616 83768683 -67014870 + MIR SINE MIR 117 184 -78 181 284 53 53 chr11 83770197 83770292 -67013261 + MIR SINE MIR 25 119 -143 2413 67 0 0 chr11 83770849 83771148 -67012405 + AluY SINE Alu 1 299 -12 5415 73 26 6 chr11 83771469 83772618 -67010935 - SVA Other Other -955 1344 57 648 36 0 0 chr11 83772618 83772701 -67010852 + (GGGAGA)n Simple_repeat Simple_repeat 1 83 0 2289 101 0 0 chr11 83772739 83773046 -67010507 - AluSq SINE Alu -6 307 1 200 302 12 12 chr11 83773253 83773339 -67010214 + CT-rich Low_complexity Low_complexity 1 86 0 393 102 0 0 chr11 83774021 83774080 -67009473 + (TTCA)n Simple_repeat Simple_repeat 1 59 0 274 329 106 0 chr11 83774080 83774241 -67009312 - L2 LINE L2 -13 3300 3123 308 331 145 0 chr11 83774415 83774581 -67008972 - L3 LINE CR1 -488 1089 900 812 197 67 17 chr11 83774914 83775092 -67008461 + MER5A DNA MER1_type 1 187 -2 330 323 84 6 chr11 83775095 83775262 -67008291 - L2 LINE L2 -703 2611 2432 224 316 0 13 chr11 83777388 83777464 -67006089 - MIR3 SINE MIR -19 189 115 211 316 143 15 chr11 83778507 83778640 -67004913 + MIR3 SINE MIR 48 197 -11 190 238 95 24 chr11 83778763 83778847 -67004706 - MIR SINE MIR -63 145 56 369 289 126 31 chr11 83779430 83779589 -67003964 + MIR SINE MIR 61 234 -28 196 264 57 0 chr11 83780736 83780789 -67002764 + L3 LINE CR1 1511 1566 -11 202 188 297 16 chr11 83780886 83780950 -67002603 - MIR SINE MIR -70 192 111 283 265 72 0 chr11 83781099 83781182 -67002371 - L2 LINE L2 -38 3234 3146 2337 230 90 56 chr11 83781482 83782531 -67001022 - L1MC5 LINE L1 -70 7891 6808 254 315 63 31 chr11 83782868 83782995 -67000558 + MIR3 SINE MIR 15 145 -63 1480 103 124 17 chr11 83783027 83783261 -67000292 - AluSx SINE Alu -14 298 40 189 310 0 17 chr11 83784202 83784260 -66999293 + MIR SINE MIR 10 66 -196 520 204 15 23 chr11 83784297 83784429 -66999124 + MIR SINE MIR 72 202 -60 461 331 44 82 chr11 83784508 83784849 -66998704 - L2 LINE L2 0 3272 2945 260 313 116 0 chr11 83785253 83785400 -66998153 - MIR3 SINE MIR -3 205 42 197 357 171 16 chr11 83785902 83786031 -66997522 - MIR SINE MIR -91 171 23 244 290 16 0 chr11 83786217 83786279 -66997274 + L2 LINE L2 3200 3262 -10 229 300 0 0 chr11 83786478 83786538 -66997015 + A-rich Low_complexity Low_complexity 4 63 0 819 221 32 0 chr11 83786694 83786884 -66996669 - L1MB4 LINE L1 -2 6178 5983 293 377 35 0 chr11 83786985 83787099 -66996454 + MIR SINE MIR 30 147 -61 526 162 126 0 chr11 83787688 83787799 -66995754 + MER63 DNA MER1_type 3 753 -83 1280 92 6 0 chr11 83787826 83787999 -66995554 + AluSp SINE Alu 135 308 -5 458 258 31 44 chr11 83789273 83789432 -66994121 + MIR3 SINE MIR 22 178 -30 206 261 54 45 chr11 83789672 83789783 -66993770 - L2 LINE L2 -215 3057 2946 1865 168 7 0 chr11 83789867 83790164 -66993389 + AluJo SINE Alu 1 299 -13 337 255 57 56 chr11 83790736 83790916 -66992637 - MIR SINE MIR 0 262 84 262 324 34 12 chr11 83791308 83791442 -66992111 + MIR3 SINE MIR 51 182 -54 245 356 0 34 chr11 83791455 83791573 -66991980 - MIR3 SINE MIR -52 156 43 273 295 70 65 chr11 83791694 83791939 -66991614 - MIR SINE MIR -14 248 4 1752 192 0 0 chr11 83792957 83793259 -66990294 - AluJo SINE Alu -10 302 1 1251 165 22 38 chr11 83793262 83793529 -66990024 - L1MB8 LINE L1 -3 6175 5913 303 350 78 28 chr11 83794013 83794230 -66989323 - MIR SINE MIR -24 238 11 412 293 106 25 chr11 83794416 83794614 -66988939 + MIR SINE MIR 34 247 -15 276 271 62 68 chr11 83795141 83795318 -66988235 - L2 LINE L2 -191 3081 2906 186 143 0 0 chr11 83795443 83795478 -66988075 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 353 331 68 0 chr11 83796230 83796378 -66987175 - MIR3 SINE MIR -1 207 50 445 211 19 0 chr11 83796844 83796948 -66986605 + MIR SINE MIR 24 129 -79 309 284 0 14 chr11 83798365 83798439 -66985114 + MIR SINE MIR 81 153 -109 240 35 0 0 chr11 83798526 83798555 -66984998 + (TA)n Simple_repeat Simple_repeat 1 29 0 261 380 51 0 chr11 83799214 83799351 -66984202 - L2 LINE L2 0 3313 3170 182 266 25 63 chr11 83799685 83799764 -66983789 + MIR SINE MIR 186 261 -1 337 294 35 42 chr11 83801744 83801887 -66981666 + MIR SINE MIR 65 206 -56 645 304 82 73 chr11 83802423 83802864 -66980689 - L2 LINE L2 -21 3251 2807 25 0 0 0 chr11 83802873 83802898 -66980655 + GC_rich Low_complexity Low_complexity 1 25 0 339 305 46 20 chr11 83803119 83803270 -66980283 + MIR3 SINE MIR 33 187 -21 228 235 98 39 chr11 83803811 83803913 -66979640 - L2 LINE L2 -309 2963 2856 186 143 0 0 chr11 83804317 83804352 -66979201 + (TG)n Simple_repeat Simple_repeat 1 35 0 491 298 60 12 chr11 83804802 83804970 -66978583 + MIR SINE MIR 49 224 -38 2094 112 0 0 chr11 83805380 83805697 -66977856 - AluSc SINE Alu 0 319 3 283 296 74 9 chr11 83805699 83805807 -66977746 - MIR SINE MIR -99 163 49 181 269 56 46 chr11 83805933 83806041 -66977512 - L2 LINE L2 -94 3178 3070 1553 234 46 74 chr11 83806351 83806849 -66976704 - L1M4c LINE L1 -3723 2690 2179 2059 129 0 3 chr11 83806849 83807143 -66976410 - AluSq SINE Alu -20 293 1 1553 234 46 74 chr11 83807143 83807373 -66976180 - L1M4c LINE L1 -4234 2179 2003 981 229 0 0 chr11 83807373 83807543 -66976010 - FAM SINE Alu -4 171 2 1553 234 46 74 chr11 83807543 83807645 -66975908 - L1M4c LINE L1 -4410 2003 1900 4214 147 32 20 chr11 83807661 83807693 -66975860 - L1MB3 LINE L1 -15 6168 6138 2154 110 3 7 chr11 83807693 83807994 -66975559 - AluSx SINE Alu -12 300 1 4214 147 32 20 chr11 83807994 83808646 -66974907 - L1MB3 LINE L1 -45 6138 5470 258 32 0 0 chr11 83808646 83808677 -66974876 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 4214 147 32 20 chr11 83808677 83808828 -66974725 - L1MB3 LINE L1 -713 5470 5322 341 184 26 0 chr11 83808829 83808905 -66974648 - AluJ/FRAM SINE Alu -3 299 222 1331 188 14 11 chr11 83808961 83809243 -66974310 - L1M4c LINE L1 -4652 1732 1450 183 313 0 0 chr11 83809399 83809466 -66974087 + L2 LINE L2 2920 2986 -327 839 272 37 0 chr11 83809554 83809771 -66973782 - MIR SINE MIR -37 225 1 224 294 188 41 chr11 83809771 83809930 -66973623 + L2 LINE L2 3084 3267 -5 242 318 34 0 chr11 83810361 83810449 -66973104 + GA-rich Low_complexity Low_complexity 4 94 0 803 185 0 20 chr11 83811081 83811227 -66972326 - FLAM_C SINE Alu 0 143 1 434 261 71 44 chr11 83811227 83811453 -66972100 - L1M4 LINE L1 -2059 4087 3856 550 170 90 4 chr11 83811481 83811620 -66971933 + MLT1C LTR MaLR 353 463 -4 939 84 0 30 chr11 83811657 83811788 -66971765 + AluSp/q SINE Alu 168 294 -19 269 295 36 36 chr11 83812439 83812551 -66971002 + L3 LINE CR1 1409 1520 -57 369 268 181 0 chr11 83812576 83812703 -66970850 + MIR SINE MIR 34 183 -79 274 216 119 82 chr11 83812896 83813030 -66970523 + MIR3 SINE MIR 60 198 -10 199 178 111 0 chr11 83813069 83813114 -66970439 + MIR3 SINE MIR 113 162 -46 573 312 30 25 chr11 83813118 83813317 -66970236 - MIR SINE MIR 0 262 63 369 211 123 26 chr11 83813575 83813689 -66969864 - MIR SINE MIR -63 145 21 3106 172 107 9 chr11 83814211 83814874 -66968679 + LTR39 LTR ERV1 56 783 0 210 216 0 20 chr11 83815096 83815147 -66968406 - MIR SINE MIR -96 166 117 195 292 83 14 chr11 83815935 83816007 -66967546 + MIR SINE MIR 116 192 -70 500 223 18 18 chr11 83816216 83816328 -66967225 - MIR SINE MIR -55 153 42 363 253 25 0 chr11 83816864 83816969 -66966584 + MIR SINE MIR 57 164 -62 268 220 209 0 chr11 83817266 83817357 -66966196 - L2 LINE L2 -12 3260 3151 438 228 0 20 chr11 83817470 83817571 -66965982 + MIR SINE MIR 20 118 -90 227 244 37 0 chr11 83817656 83817738 -66965815 - L2 LINE L2 -46 3226 3142 180 311 54 40 chr11 83817816 83817890 -66965663 + MIR SINE MIR 174 248 -14 1251 159 99 14 chr11 83818038 83818321 -66965232 + MER7A DNA MER2_type 42 346 0 340 261 210 0 chr11 83818368 83818487 -66965066 - MIR3 SINE MIR -35 173 30 676 297 216 15 chr11 83818649 83819119 -66964434 + L2 LINE L2 2764 3305 -8 187 225 0 0 chr11 83819552 83819592 -66963961 + MIR SINE MIR 109 148 -114 575 269 64 0 chr11 83820233 83820404 -66963149 + MIR SINE MIR 31 212 -50 407 248 51 8 chr11 83821121 83821238 -66962315 - MIR3 SINE MIR -75 133 12 210 339 85 37 chr11 83821687 83821876 -66961677 + L2 LINE L2 3074 3271 -1 250 314 109 26 chr11 83822189 83822345 -66961208 + MIR SINE MIR 79 247 -15 352 339 0 24 chr11 83822412 83822539 -66961014 - MIR SINE MIR -75 187 64 314 293 75 0 chr11 83822892 83823025 -66960528 + MIR3 SINE MIR 51 193 -15 186 269 0 0 chr11 83824184 83824236 -66959317 + L2 LINE L2 2531 2582 -732 * 475 304 40 40 chr11 83824204 83824457 -66959096 + L2 LINE L2 2848 3100 -213 213 39 0 0 chr11 83824500 83824526 -66959027 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1751 157 60 17 chr11 83825514 83825987 -66957566 - Charlie1 DNA MER1_type -1 2760 1 182 217 179 57 chr11 83828176 83828282 -66955271 + MIR3 SINE MIR 12 130 -78 385 284 64 59 chr11 83828832 83829036 -66954517 + MIR SINE MIR 21 225 -37 200 200 0 0 chr11 83829105 83829145 -66954408 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 271 247 25 37 chr11 83829578 83829659 -66953894 - L2 LINE L2 -1 3271 3192 289 284 10 20 chr11 83829732 83829834 -66953719 - L2 LINE L2 -227 3045 2945 560 251 65 24 chr11 83829885 83830176 -66953377 - L2 LINE L2 -463 2851 2549 1024 173 17 0 chr11 83830877 83831056 -66952497 + AluSg/x SINE Alu 117 298 -14 287 276 95 0 chr11 83831065 83831170 -66952383 - MIR SINE MIR -30 232 118 279 271 69 56 chr11 83832321 83832465 -66951088 - L3 LINE CR1 -360 1217 1072 197 237 271 51 chr11 83832474 83832592 -66950961 - MIR SINE MIR -9 253 110 276 333 70 19 chr11 83833147 83833303 -66950250 - L3 LINE CR1 -513 1064 901 196 191 119 0 chr11 83835755 83835797 -66947756 - L2 LINE L2 -1 3312 3266 227 281 214 0 chr11 83836126 83836215 -66947338 - L2 LINE L2 -40 3273 3166 294 254 28 0 chr11 83836674 83836745 -66946808 + MIR SINE MIR 81 153 -55 460 275 53 41 chr11 83837600 83837771 -66945782 - L2 LINE L2 -167 3105 2933 383 347 47 0 chr11 83838789 83838939 -66944614 + MIR3 SINE MIR 42 198 -10 240 248 95 67 chr11 83839270 83839375 -66944178 + MIR SINE MIR 67 174 -88 276 326 10 10 chr11 83839549 83839647 -66943906 - MIR3 SINE MIR -1 207 110 2479 159 42 34 chr11 83840007 83840280 -66943273 - L1MB4 LINE L1 -1 6179 5899 1636 168 90 12 chr11 83840280 83840601 -66942952 - MER7A DNA MER2_type -2 344 1 2479 159 42 34 chr11 83840601 83840855 -66942698 - L1MB4 LINE L1 -281 5899 5648 193 252 0 163 chr11 83840865 83841000 -66942553 - MIR SINE MIR -63 145 33 32 0 0 0 chr11 83841322 83841354 -66942199 + AT_rich Low_complexity Low_complexity 1 32 0 255 280 13 13 chr11 83841606 83841681 -66941872 - L2 LINE L2 -5 3308 3234 336 248 143 0 chr11 83841701 83841806 -66941747 - MIR3 SINE MIR 0 208 89 238 320 72 13 chr11 83841945 83842079 -66941474 - MIR SINE MIR -55 153 22 386 257 43 71 chr11 83842396 83842536 -66941017 + MIR SINE MIR 47 182 -80 363 314 16 8 chr11 83842799 83842920 -66940633 + MIR3 SINE MIR 70 191 -17 187 282 45 100 chr11 83843226 83843336 -66940217 - MIR3 SINE MIR -24 184 81 340 259 28 9 chr11 83844119 83844227 -66939326 - MIR SINE MIR -64 144 35 320 247 56 49 chr11 83844256 83844449 -66939104 - MIR SINE MIR -36 226 35 605 263 61 47 chr11 83845305 83845437 -66938116 - MIR SINE MIR -11 251 113 1770 168 0 23 chr11 83845437 83845746 -66937807 + AluJo SINE Alu 1 302 -10 605 263 61 47 chr11 83845746 83845826 -66937727 - MIR SINE MIR -149 113 36 34 0 0 0 chr11 83845886 83845920 -66937633 + AT_rich Low_complexity Low_complexity 1 34 0 1097 265 70 75 chr11 83846581 83846718 -66936835 - L2 LINE L2 -13 3300 3164 1769 189 17 0 chr11 83846718 83847020 -66936533 + AluJb SINE Alu 1 307 -5 1097 265 70 75 chr11 83847020 83847496 -66936057 - L2 LINE L2 -149 3164 2670 716 275 68 4 chr11 83847641 83847892 -66935661 - L2 LINE L2 -639 2675 2409 265 304 38 0 chr11 83847964 83848043 -66935510 - L2 LINE L2 -55 3217 3136 251 114 23 0 chr11 83848159 83848203 -66935350 + (TG)n Simple_repeat Simple_repeat 2 46 0 445 331 69 12 chr11 83849100 83849260 -66934293 - MIR SINE MIR -59 203 35 205 102 204 0 chr11 83849440 83849489 -66934064 - L2 LINE L2 -185 3087 3029 410 312 39 19 chr11 83849990 83850144 -66933409 + MIR SINE MIR 20 176 -86 185 350 40 10 chr11 83850229 83850329 -66933224 + L2 LINE L2 2992 3094 -178 320 368 29 12 chr11 83850332 83850503 -66933050 - MIR SINE MIR -10 252 79 258 329 109 5 chr11 83850868 83851078 -66932475 + L2 LINE L2 2578 2809 -505 402 269 119 37 chr11 83851139 83851273 -66932280 - MER91B DNA MER1_type -38 152 8 182 321 161 36 chr11 83851280 83851473 -66932080 + L2 LINE L2 2875 3091 -181 273 298 99 15 chr11 83852082 83852213 -66931340 - MIR3 SINE MIR -16 192 51 199 108 27 0 chr11 83852693 83852730 -66930823 + MIR SINE MIR 108 145 -117 522 294 112 10 chr11 83853275 83853472 -66930081 - MIR SINE MIR -21 241 25 186 43 0 0 chr11 83853602 83853625 -66929928 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 467 310 40 55 chr11 83853630 83853830 -66929723 + L2 LINE L2 3076 3272 0 301 366 96 24 chr11 83853874 83854125 -66929428 - L2 LINE L2 -467 2847 2579 567 174 8 15 chr11 83855073 83855205 -66928348 + (TCCA)n Simple_repeat Simple_repeat 2 132 0 218 187 13 6 chr11 83855538 83855613 -66927940 + MIR3 SINE MIR 38 156 -52 21 36 0 0 chr11 83855630 83855658 -66927895 + AT_rich Low_complexity Low_complexity 1 28 0 187 127 16 175 chr11 83855663 83855726 -66927827 - L2 LINE L2 0 3313 3261 * 531 210 20 44 chr11 83855716 83855882 -66927671 - MIR SINE MIR -65 143 17 1261 195 104 17 chr11 83857658 83857956 -66925597 + MER33 DNA MER1_type 1 324 0 186 151 75 19 chr11 83858011 83858064 -66925489 - L2 LINE L2 -222 3050 2995 240 59 0 0 chr11 83858645 83858679 -66924874 + (T)n Simple_repeat Simple_repeat 1 34 0 1104 115 0 0 chr11 83858806 83858962 -66924591 - FRAM SINE Alu 0 40 1 310 265 60 68 chr11 83861833 83861950 -66921603 + MIR SINE MIR 37 152 -110 5921 111 56 4 chr11 83861952 83862956 -66920597 - Tigger1 DNA MER2_type 0 2418 1363 2203 104 3 0 chr11 83862957 83863254 -66920299 - AluSg SINE Alu -12 298 1 6721 135 28 2 chr11 83863261 83864406 -66919147 - Tigger1 DNA MER2_type -1243 1175 1 238 265 98 39 chr11 83864407 83864509 -66919044 + MIR SINE MIR 154 261 -1 308 186 35 15 chr11 83864838 83864917 -66918636 - MIR SINE MIR -55 153 85 232 322 8 51 chr11 83865113 83865231 -66918322 + MIR SINE MIR 36 148 -60 325 297 30 30 chr11 83865665 83865766 -66917787 - MIR SINE MIR 0 262 162 192 273 0 0 chr11 83867179 83867245 -66916308 + (TG)n Simple_repeat Simple_repeat 2 67 0 2293 106 0 0 chr11 83868074 83868376 -66915177 + AluSg SINE Alu 1 302 -8 616 200 0 8 chr11 83869838 83870103 -66913450 + (TGG)n Simple_repeat Simple_repeat 1 263 0 682 112 0 0 chr11 83870237 83870326 -66913227 - AluSg SINE Alu -221 89 1 1961 129 24 3 chr11 83870326 83870620 -66912933 - AluSq SINE Alu -13 300 1 338 288 8 0 chr11 83871240 83871365 -66912188 - LTR37B LTR ERV1 0 468 343 9970 198 50 24 chr11 83871365 83873541 -66910012 + L1M2a LINE L1 3 2326 -4841 2205 115 3 3 chr11 83873541 83873853 -66909700 + AluSx SINE Alu 1 312 0 9970 198 50 24 chr11 83873853 83875443 -66908110 + L1M2a LINE L1 2326 3874 -3293 2402 129 24 0 chr11 83875443 83875814 -66907739 + L1PA16 LINE L1 5785 6164 -2 1123 188 12 4 chr11 83875916 83876156 -66907397 + L1M2a LINE L1 3856 4097 -3070 1694 192 12 3 chr11 83876159 83876492 -66907061 - L1MCa LINE L1 -6089 337 2 2462 77 0 3 chr11 83876618 83876918 -66906635 - AluSc SINE Alu -10 299 1 1531 115 37 29 chr11 83876942 83877186 -66906367 + AluSq SINE Alu 67 312 -1 2287 112 3 0 chr11 83877402 83877706 -66905847 + AluSg SINE Alu 1 305 -5 351 261 109 42 chr11 83879842 83879961 -66903592 - L2 LINE L2 0 3272 3146 1475 184 27 85 chr11 83880070 83880376 -66903177 - MLT1B LTR MaLR -2 388 111 2269 88 10 3 chr11 83880376 83880671 -66902882 + AluSq SINE Alu 1 297 -16 1475 184 27 85 chr11 83880671 83880776 -66902777 - MLT1B LTR MaLR -279 111 1 409 258 71 50 chr11 83880791 83880989 -66902564 - L1MC4 LINE L1 -1 8041 7840 234 143 24 0 chr11 83882406 83882448 -66901105 - L2 LINE L2 -21 3251 3209 197 358 135 0 chr11 83882452 83882600 -66900953 - MIR3 SINE MIR -3 205 38 266 224 79 40 chr11 83882651 83882727 -66900826 + MIR SINE MIR 109 187 -75 595 269 217 0 chr11 83883467 83883679 -66899874 - L2 LINE L2 -42 3230 2973 2188 127 74 43 chr11 83884164 83884276 -66899277 - MSTB1 LTR MaLR 0 432 325 1949 156 6 13 chr11 83884276 83884590 -66898963 + AluJb SINE Alu 1 312 0 2188 127 74 43 chr11 83884590 83884896 -66898657 - MSTB1 LTR MaLR -107 325 1 202 286 23 30 chr11 83885362 83885495 -66898058 - L2 LINE L2 -314 2958 2827 2225 74 7 0 chr11 83886205 83886474 -66897079 - AluSp SINE Alu -40 273 3 328 292 21 68 chr11 83887538 83887730 -66895823 - MIR SINE MIR -29 233 51 1565 158 41 15 chr11 83887964 83888230 -66895323 - AluJo SINE Alu -34 278 6 774 169 0 0 chr11 83889572 83889690 -66893863 - FLAM_C SINE Alu -15 118 1 2383 65 3 56 chr11 83889913 83890235 -66893318 + AluY SINE Alu 1 305 -6 267 31 0 0 chr11 83890695 83890727 -66892826 + (TCCC)n Simple_repeat Simple_repeat 4 35 0 231 308 137 0 chr11 83891681 83891798 -66891755 + MIR SINE MIR 60 192 -70 1395 125 119 3 chr11 83891936 83892231 -66891322 - L1MA7 LINE L1 -2 6289 5961 281 113 0 19 chr11 83892246 83892292 -66891261 - L1MA7 LINE L1 -304 5987 5941 2172 100 38 3 chr11 83892292 83892582 -66890971 - AluSc SINE Alu -9 300 1 200 302 12 12 chr11 83892788 83892874 -66890679 + CT-rich Low_complexity Low_complexity 1 86 0 200 258 45 11 chr11 83893526 83893615 -66889938 - MIR SINE MIR -67 141 50 514 240 34 34 chr11 83894214 83894389 -66889164 - L2 LINE L2 -199 3073 2899 402 279 36 48 chr11 83895494 83895659 -66887894 + L2 LINE L2 2898 3060 -212 226 200 100 29 chr11 83895880 83895950 -66887603 - MER5C DNA MER1_type -248 76 2 340 211 92 18 chr11 83896607 83896716 -66886837 - MIR SINE MIR -118 144 28 483 238 114 17 chr11 83898435 83898589 -66884964 - MIR SINE MIR -62 146 3 431 266 144 28 chr11 83899859 83900064 -66883489 - MIR SINE MIR -16 246 11 393 332 66 9 chr11 83900264 83900490 -66883063 + L2 LINE L2 2450 2688 -626 180 305 257 9 chr11 83900785 83900890 -66882663 + L2 LINE L2 3134 3264 -8 210 208 0 0 chr11 83901007 83901055 -66882498 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 190 253 147 27 chr11 83901455 83901530 -66882023 + MIR SINE MIR 119 202 -60 247 223 165 10 chr11 83903219 83903322 -66880231 - L2 LINE L2 -1509 1805 1687 195 274 137 0 chr11 83903816 83903911 -66879642 + L2 LINE L2 1868 1975 -1339 180 0 0 0 chr11 83906418 83906438 -66877115 + (ATTG)n Simple_repeat Simple_repeat 3 22 0 180 0 0 0 chr11 83907948 83907968 -66875585 + (TCTA)n Simple_repeat Simple_repeat 2 21 0 379 313 54 9 chr11 83908313 83908425 -66875128 + L2 LINE L2 3182 3298 -15 30 59 0 0 chr11 83908661 83908712 -66874841 + AT_rich Low_complexity Low_complexity 1 51 0 364 238 150 0 chr11 83908786 83908946 -66874607 - L1M4 LINE L1 -1511 4635 4452 7272 47 22 1 chr11 83909075 83910538 -66873015 - L1PA6 LINE L1 -4 6150 4674 28921 78 28 37 chr11 83910538 83915004 -66868549 - L1PA6 LINE L1 -1712 4434 11 852 209 109 108 chr11 83915046 83915082 -66868471 + MLT1E1 LTR MaLR 119 153 -501 189 0 0 0 chr11 83915082 83915103 -66868450 + (CATTA)n Simple_repeat Simple_repeat 3 23 0 852 209 109 108 chr11 83915103 83915498 -66868055 + MLT1E1 LTR MaLR 153 654 0 1523 190 39 49 chr11 83915498 83915803 -66867750 + AluJo SINE Alu 1 302 -10 708 202 0 8 chr11 83915865 83915994 -66867559 + AluSg/x SINE Alu 170 297 -15 347 301 49 67 chr11 83915994 83916383 -66867170 + L1M4c LINE L1 1215 1596 -4788 249 295 16 33 chr11 83916594 83916716 -66866837 + LTR67 LTR ERVL 428 547 -10 1923 152 27 67 chr11 83916926 83917328 -66866225 + MLT1B LTR MaLR 1 386 -4 205 329 0 0 chr11 83918214 83918284 -66865269 + L2 LINE L2 3203 3272 0 360 317 28 42 chr11 83918804 83918824 -66864729 - MIR3 SINE MIR -67 141 122 1850 94 58 78 chr11 83918824 83918952 -66864601 + AluSx SINE Alu 1 130 -182 2400 80 13 22 chr11 83918952 83919264 -66864289 + AluSg SINE Alu 1 309 -1 1850 94 58 78 chr11 83919264 83919443 -66864110 + AluSx SINE Alu 130 302 -10 360 317 28 42 chr11 83919443 83919564 -66863989 - MIR3 SINE MIR -86 122 2 21 36 0 0 chr11 83919852 83919880 -66863673 + AT_rich Low_complexity Low_complexity 1 28 0 180 319 43 0 chr11 83919992 83920039 -66863514 - L3 LINE CR1 -11 1566 1518 427 282 141 18 chr11 83920331 83920494 -66863059 - MER5A DNA MER1_type -6 183 1 283 278 46 9 chr11 83920771 83920879 -66862674 - MIR SINE MIR -1 261 150 720 291 31 34 chr11 83921438 83921761 -66861792 + MLT1H LTR MaLR 1 322 -227 279 266 28 126 chr11 83922022 83922165 -66861388 - MIR SINE MIR -104 158 30 192 354 47 39 chr11 83923088 83923215 -66860338 - MIR3 SINE MIR -47 161 34 309 268 381 0 chr11 83923401 83923569 -66859984 + MIR SINE MIR 30 261 -1 237 254 0 0 chr11 83924145 83924204 -66859349 + A-rich Low_complexity Low_complexity 1 59 0 375 213 25 0 chr11 83924213 83924293 -66859260 + MER63 DNA MER1_type 42 749 -87 268 258 152 0 chr11 83924300 83924366 -66859187 + MER63 DNA MER1_type 984 1059 -1 314 279 188 12 chr11 83924390 83924555 -66858998 + L2 LINE L2 3120 3313 0 253 228 294 0 chr11 83924808 83924944 -66858609 + MIR SINE MIR 1 176 -86 22 0 0 0 chr11 83925001 83925023 -66858530 + AT_rich Low_complexity Low_complexity 1 22 0 4266 126 18 0 chr11 83925103 83925762 -66857791 - L1PA16 LINE L1 -20 6146 5476 1164 81 0 6 chr11 83925867 83926039 -66857514 - L1PA16 LINE L1 -681 5485 5315 * 1336 242 69 5 chr11 83926034 83926452 -66857101 + L1M4 LINE L1 4494 4938 -1208 530 284 19 62 chr11 83926456 83926504 -66857049 + L1MEc LINE L1 2059 2108 -4288 1834 175 3 13 chr11 83926504 83926819 -66856734 + AluJo SINE Alu 1 312 0 530 284 19 62 chr11 83926819 83926981 -66856572 + L1MEc LINE L1 2108 2260 -4136 1618 52 29 0 chr11 83927021 83927231 -66856322 - L1PA5 LINE L1 0 6154 5939 700 275 62 0 chr11 83927237 83927561 -66855992 + L1MEc LINE L1 2216 2559 -3656 207 0 0 0 chr11 83927561 83927584 -66855969 + (CA)n Simple_repeat Simple_repeat 2 24 0 1176 229 28 35 chr11 83928237 83928661 -66854892 + L1MEc LINE L1 2665 3085 -3130 535 151 0 0 chr11 83928683 83928769 -66854784 + AluSg/x SINE Alu 211 296 -13 622 216 80 30 chr11 83928770 83929034 -66854519 + L1MEc LINE L1 3070 3346 -2869 560 144 42 25 chr11 83929042 83929133 -66854420 + L1MB5 LINE L1 6047 6142 -32 2538 73 0 0 chr11 83929133 83929434 -66854119 + AluSq SINE Alu 1 301 -12 560 144 42 25 chr11 83929434 83929460 -66854093 + L1MB5 LINE L1 6142 6166 -8 8973 136 45 18 chr11 83929496 83930509 -66853044 + L1MA8 LINE L1 3526 4510 -1850 2083 128 7 7 chr11 83930509 83930807 -66852746 + AluSx SINE Alu 1 298 -14 8973 136 45 18 chr11 83930807 83932222 -66851331 + L1MA8 LINE L1 4510 6023 -337 1419 189 124 0 chr11 83932224 83932489 -66851064 + AluJo SINE Alu 5 302 0 28 0 0 0 chr11 83932599 83932627 -66850926 + AT_rich Low_complexity Low_complexity 1 28 0 2597 55 0 0 chr11 83932658 83932966 -66850587 - AluY SINE Alu -3 308 1 443 224 52 0 chr11 83932972 83933088 -66850465 - L1ME1 LINE L1 -2 6164 6043 * 888 176 41 37 chr11 83933087 83933288 -66850265 - L1M4 LINE L1 -922 5224 5020 1965 158 3 0 chr11 83933288 83933586 -66849967 - AluJb SINE Alu -13 299 1 888 176 41 37 chr11 83933586 83933628 -66849925 - L1M4 LINE L1 -1126 5020 4980 1985 121 12 75 chr11 83933648 83933979 -66849574 + AluSx SINE Alu 1 310 -2 207 0 0 0 chr11 83934205 83934228 -66849325 + (A)n Simple_repeat Simple_repeat 1 23 0 1281 239 97 22 chr11 83934257 83934891 -66848662 + L1MCa LINE L1 1512 2395 -4212 1132 144 68 4 chr11 83934899 83935135 -66848418 + MER96B DNA MER1_type? 31 281 -136 779 282 100 7 chr11 83935780 83936060 -66847493 - L2 LINE L2 -1189 2125 1820 1493 209 117 25 chr11 83936106 83936617 -66846936 + MER34C LTR ERV1 1 558 -27 286 305 32 0 chr11 83936642 83936737 -66846816 - L2 LINE L2 -1511 1803 1706 2872 184 46 43 chr11 83936820 83937563 -66845990 - L1MD2 LINE L1 -10 6349 5605 6791 121 68 3 chr11 83937564 83938716 -66844837 + Tigger3b DNA MER2_type 6 1231 0 1403 161 62 50 chr11 83938716 83939157 -66844396 - L1MD2 LINE L1 -754 5605 5158 282 373 78 7 chr11 83939365 83939507 -66844046 + L2 LINE L2 3117 3268 -4 327 282 17 60 chr11 83940079 83940196 -66843357 + MIR3 SINE MIR 11 122 -86 552 241 82 29 chr11 83940819 83940989 -66842564 + MIR SINE MIR 2 180 -82 2222 87 25 0 chr11 83941787 83942095 -66841458 + AluSc SINE Alu 2 316 0 284 396 58 7 chr11 83942896 83943050 -66840503 + L2 LINE L2 1103 1264 -2050 558 354 38 0 chr11 83943140 83943298 -66840255 + L2 LINE L2 3108 3271 -1 467 240 95 23 chr11 83943501 83943722 -66839831 + L1M4 LINE L1 3531 3767 -2379 2151 135 0 0 chr11 83943844 83944141 -66839412 + AluSx SINE Alu 1 297 -15 862 306 86 44 chr11 83944849 83945487 -66838066 + ERVL LTR ERVL 993 1657 -4107 299 258 113 0 chr11 83945539 83945636 -66837917 + L2 LINE L2 2163 2270 -1044 2294 169 15 9 chr11 83945647 83946065 -66837488 + MSTB LTR MaLR 1 352 -3 1815 150 15 68 chr11 83946157 83946557 -66836996 + L1MA4 LINE L1 5911 6289 -11 189 305 176 27 chr11 83947662 83947849 -66835704 + L2 LINE L2 2872 3086 -186 335 300 43 27 chr11 83948192 83948364 -66835189 - MIR SINE MIR -56 206 36 189 291 163 12 chr11 83948591 83948677 -66834876 + L2 LINE L2 2626 2724 -590 1381 99 0 24 chr11 83948748 83948961 -66834592 - AluY SINE Alu 0 311 104 1336 185 57 3 chr11 83948964 83949316 -66834237 - L1P LINE L1 -2851 3295 2925 198 0 0 0 chr11 83949416 83949438 -66834115 + (A)n Simple_repeat Simple_repeat 1 22 0 2083 200 42 43 chr11 83949449 83950028 -66833525 - L1M4 LINE L1 -1186 4960 4383 955 172 52 26 chr11 83950044 83950276 -66833277 - L1MD3 LINE L1 0 7995 7758 3184 234 87 58 chr11 83950295 83950792 -66832761 - L1M4 LINE L1 -1780 4366 3885 1824 163 17 3 chr11 83950792 83951086 -66832467 - AluJb SINE Alu -14 298 1 3184 234 87 58 chr11 83951086 83952109 -66831444 - L1M4 LINE L1 -2261 3885 2802 329 158 0 0 chr11 83952170 83952227 -66831326 - L1M4 LINE L1 -3580 2566 2510 2212 87 18 0 chr11 83952362 83952648 -66830905 - AluSp SINE Alu -21 292 2 5349 129 26 3 chr11 83952736 83953668 -66829885 - L1MA4A LINE L1 -6 6297 5345 1996 185 30 11 chr11 83953672 83954143 -66829410 - L1MEc LINE L1 -3041 3807 3328 4697 207 7 105 chr11 83954159 83954662 -66828891 - L1 LINE L1 -4414 2435 1884 2047 133 0 30 chr11 83954662 83954962 -66828591 - AluSx SINE Alu -21 291 1 4697 207 7 105 chr11 83954962 83955033 -66828520 - L1 LINE L1 -4965 1884 1808 2021 125 29 4 chr11 83955033 83955314 -66828239 - AluSx SINE Alu -24 288 1 4697 207 7 105 chr11 83955314 83956363 -66827190 - L1 LINE L1 -5041 1808 970 261 291 25 0 chr11 83956443 83956522 -66827031 + MLT1J LTR MaLR 428 508 -3 262 244 78 70 chr11 83956733 83956848 -66826705 - MIR SINE MIR -63 145 30 207 279 0 15 chr11 83957353 83957421 -66826132 + T-rich Low_complexity Low_complexity 2 68 0 285 258 103 41 chr11 83957979 83958076 -66825477 - L2 LINE L2 -49 3223 3121 469 248 137 12 chr11 83958565 83958726 -66824827 + MIR SINE MIR 48 228 -34 204 232 18 0 chr11 83958807 83958863 -66824690 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 204 354 0 0 chr11 83958890 83958955 -66824598 - L2 LINE L2 -8 3264 3200 430 243 139 22 chr11 83960043 83960360 -66823193 - L1ME4a LINE L1 -169 5952 5599 1237 132 0 0 chr11 83960375 83960549 -66823004 + AluJb SINE Alu 130 303 -9 37 0 0 0 chr11 83960866 83960903 -66822650 + AT_rich Low_complexity Low_complexity 1 37 0 309 239 128 22 chr11 83961398 83961578 -66821975 - L1MEc LINE L1 -3771 3077 2879 392 335 78 73 chr11 83961630 83961683 -66821870 - L1MEc LINE L1 -4159 2870 2819 1502 157 3 107 chr11 83961683 83962028 -66821525 - AluSg1 SINE Alu 0 309 1 392 335 78 73 chr11 83962028 83962524 -66821029 - L1MEc LINE L1 -4210 2819 2318 386 266 66 87 chr11 83963943 83964229 -66819324 - HAL1 LINE L1 -1401 1106 827 211 348 68 17 chr11 83965816 83965934 -66817619 - L2 LINE L2 -5 3308 3185 843 59 0 0 chr11 83966145 83966246 -66817307 + AluY SINE Alu 1 101 -217 4247 20 24 0 chr11 83966246 83966798 -66816755 + L1P LINE L1 2733 3297 -2849 1706 42 0 23 chr11 83966798 83967012 -66816541 + AluY SINE Alu 103 311 0 377 262 92 57 chr11 83967158 83967299 -66816254 - L2 LINE L2 0 3272 3127 241 236 56 28 chr11 83967462 83967534 -66816019 - L2 LINE L2 -1 3271 3198 183 211 169 42 chr11 83967953 83968024 -66815529 - MER5A DNA MER1_type -109 80 1 234 0 0 0 chr11 83968109 83968135 -66815418 + (CATCC)n Simple_repeat Simple_repeat 1 26 0 551 213 39 16 chr11 83968135 83968262 -66815291 + L2 LINE L2 3182 3311 -2 228 333 54 36 chr11 83968803 83968914 -66814639 - L2 LINE L2 0 3272 3160 680 150 105 0 chr11 83969352 83969505 -66814048 + L1MA5 LINE L1 6132 6300 0 21 0 0 0 chr11 83969619 83969640 -66813913 + AT_rich Low_complexity Low_complexity 1 21 0 280 254 117 0 chr11 83969688 83969822 -66813731 + MIR SINE MIR 8 162 -62 511 333 36 22 chr11 83969937 83970162 -66813391 - MIR SINE MIR -15 247 20 334 318 72 62 chr11 83970356 83970551 -66813002 - MIR SINE MIR -64 198 2 213 180 120 0 chr11 83971533 83971583 -66811970 + MIR SINE MIR 151 206 -56 255 261 104 3 chr11 83971659 83971778 -66811775 - MER5B DNA MER1_type 0 178 1 538 303 72 117 chr11 83971861 83972333 -66811220 - L2 LINE L2 -18 3254 2804 283 273 147 57 chr11 83972360 83972551 -66811002 - MIR SINE MIR -56 206 10 235 191 0 0 chr11 83972654 83972696 -66810857 - MIR SINE MIR -118 144 103 2414 71 0 0 chr11 83972711 83973006 -66810547 - AluY SINE Alu -16 295 1 299 263 12 12 chr11 83973031 83973111 -66810442 + MIR3 SINE MIR 82 161 -47 1695 171 52 0 chr11 83973359 83973646 -66809907 - AluJb SINE Alu -10 302 1 375 41 0 0 chr11 83974289 83974338 -66809215 + (CA)n Simple_repeat Simple_repeat 1 49 0 2081 144 37 3 chr11 83974364 83974718 -66808835 + MER47A DNA MER2_type 1 366 0 715 284 92 60 chr11 83974742 83975122 -66808431 - L2 LINE L2 0 3313 2922 1141 161 75 18 chr11 83975136 83975415 -66808138 + MER33 DNA MER1_type 2 296 -28 23 0 0 0 chr11 83975945 83975968 -66807585 + AT_rich Low_complexity Low_complexity 1 23 0 352 243 73 85 chr11 83975979 83976156 -66807397 - L1MC4 LINE L1 -42 8000 7826 619 118 0 11 chr11 83976415 83976508 -66807045 + AluS SINE Alu 1 92 -221 204 40 0 0 chr11 83976610 83976635 -66806918 + (A)n Simple_repeat Simple_repeat 1 25 0 290 377 0 0 chr11 83976642 83976719 -66806834 - MIR SINE MIR -167 95 19 205 205 0 0 chr11 83976988 83977027 -66806526 + A-rich Low_complexity Low_complexity 1 39 0 1931 137 24 3 chr11 83977629 83977922 -66805631 - AluSq SINE Alu -14 299 1 1564 138 25 36 chr11 83978046 83978322 -66805231 + AluJo SINE Alu 1 273 -39 261 0 0 0 chr11 83978328 83978357 -66805196 + (TC)n Simple_repeat Simple_repeat 2 30 0 948 169 22 22 chr11 83978421 83978599 -66804954 - MER58A DNA MER1_type 0 224 47 240 266 161 40 chr11 83978713 83978837 -66804716 - MIR SINE MIR -110 152 14 292 266 48 113 chr11 83979771 83980000 -66803553 + L3 LINE CR1 289 502 -1075 410 267 169 29 chr11 83980173 83980345 -66803208 + MIR SINE MIR 61 256 -6 189 312 140 11 chr11 83980384 83980477 -66803076 + L3 LINE CR1 693 797 -780 1934 147 0 17 chr11 83980841 83981140 -66802413 + AluJo SINE Alu 1 294 -18 2262 103 3 7 chr11 83981142 83981452 -66802101 + AluSq SINE Alu 1 309 -4 2306 131 31 10 chr11 83981780 83982241 -66801312 + L1MB8 LINE L1 5147 5616 -558 2609 151 28 40 chr11 83982244 83982742 -66800811 + L1MB8 LINE L1 5687 6178 0 2006 110 0 0 chr11 83983012 83983276 -66800277 + AluSg SINE Alu 1 264 -46 1959 125 3 37 chr11 83983376 83983697 -66799856 - AluSq SINE Alu -3 310 1 2532 40 0 17 chr11 83983902 83984201 -66799352 - AluY SINE Alu -16 295 2 245 163 0 23 chr11 83984733 83984776 -66798777 - MLT2C1 LTR ERVL 0 397 356 * 1409 131 14 14 chr11 83984769 83984990 -66798563 - MLT2C1 LTR ERVL -167 230 10 392 208 91 65 chr11 83985003 83985157 -66798396 - L1ME LINE L1 -376 5745 5588 575 323 120 46 chr11 83985341 83985901 -66797652 + L2 LINE L2 1324 1924 -1390 183 100 0 0 chr11 83985905 83985935 -66797618 + (A)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chr11 83985976 83985998 -66797555 + (GGCTG)n Simple_repeat Simple_repeat 1 22 0 236 265 0 12 chr11 83986011 83986094 -66797459 + CT-rich Low_complexity Low_complexity 4 85 0 2603 41 0 13 chr11 83986257 83986571 -66796982 + AluY SINE Alu 2 311 0 435 302 43 0 chr11 83986666 83986782 -66796771 + L2 LINE L2 3150 3270 -2 203 407 90 17 chr11 83986796 83987140 -66796413 + L2 LINE L2 2494 2862 -452 226 327 93 28 chr11 83987184 83987291 -66796262 + L2 LINE L2 2945 3058 -214 505 200 45 0 chr11 83987310 83987420 -66796133 + L2 LINE L2 3199 3313 0 215 272 123 18 chr11 83988177 83988291 -66795262 + L2 LINE L2 3169 3294 -19 572 199 28 151 chr11 83989083 83989211 -66794342 + MIR SINE MIR 43 127 -135 2254 110 0 0 chr11 83989211 83989510 -66794043 + AluY SINE Alu 1 299 -12 572 199 28 151 chr11 83989510 83989632 -66793921 + MIR SINE MIR 127 262 0 542 293 21 0 chr11 83989706 83989846 -66793707 + L2 LINE L2 3171 3313 0 181 308 46 0 chr11 83990444 83990509 -66793044 - L2 LINE L2 -298 2974 2907 487 251 39 56 chr11 83990544 83990723 -66792830 - LTR67 LTR ERVL -2 555 380 249 83 0 0 chr11 83991239 83991275 -66792278 + (GA)n Simple_repeat Simple_repeat 1 36 0 419 255 10 31 chr11 83991421 83991519 -66792034 - MLT1L LTR MaLR -421 194 99 394 229 121 29 chr11 83991522 83991662 -66791891 - MER5A DNA MER1_type 0 189 37 * 882 150 7 7 chr11 83991546 83991686 -66791867 + MER5A DNA MER1_type 48 187 -2 286 195 73 24 chr11 83991708 83991790 -66791763 - MLT1L LTR MaLR -522 93 8 306 297 93 8 chr11 83991987 83992105 -66791448 + MIR SINE MIR 104 231 -31 186 43 0 0 chr11 83992162 83992185 -66791368 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1685 140 76 11 chr11 83992189 83992453 -66791100 - AluJo SINE Alu -31 281 1 191 322 44 22 chr11 83992788 83992878 -66790675 - MIR3 SINE MIR -25 183 92 2160 118 3 0 chr11 83992882 83993178 -66790375 - AluSq SINE Alu -16 297 1 562 303 34 11 chr11 83993700 83993878 -66789675 - MIR3 SINE MIR -26 182 1 411 318 46 12 chr11 83993902 83994075 -66789478 + MIR SINE MIR 12 190 -72 556 221 92 0 chr11 83994144 83994275 -66789278 + MIR SINE MIR 64 206 -56 1260 195 57 89 chr11 83994275 83994352 -66789201 - MER39 LTR ERV1 0 707 629 2419 59 7 3 chr11 83994352 83994658 -66788895 + AluSx SINE Alu 1 307 -5 1260 195 57 89 chr11 83994658 83995090 -66788463 - MER39 LTR ERV1 -78 629 5 236 194 0 0 chr11 83995058 83995094 -66788459 - MER34C LTR ERV1 -549 36 1 * 190 194 0 0 chr11 83995109 83995145 -66788408 + L2 LINE L2 3223 3258 -14 203 323 0 32 chr11 83996065 83996127 -66787426 - L2 LINE L2 -3 3269 3210 * 412 291 77 33 chr11 83996097 83996292 -66787261 - MIR SINE MIR -27 235 38 189 0 0 0 chr11 83996537 83996558 -66786995 + (T)n Simple_repeat Simple_repeat 1 21 0 241 291 12 23 chr11 83996774 83996860 -66786693 + MIR3 SINE MIR 106 190 -18 303 297 162 0 chr11 83997276 83997424 -66786129 - L3 LINE CR1 -234 1343 1172 232 138 62 46 chr11 83997789 83997854 -66785699 + (TATTG)n Simple_repeat Simple_repeat 3 68 0 495 298 0 16 chr11 83998049 83998173 -66785380 - MIR SINE MIR -118 144 23 2491 72 0 3 chr11 83998424 83998728 -66784825 + AluSq SINE Alu 1 303 -10 250 253 193 0 chr11 83998945 83999028 -66784525 + MIR3 SINE MIR 81 179 -29 2172 126 3 0 chr11 83999033 83999334 -66784219 - AluSx SINE Alu -10 302 1 203 362 75 43 chr11 83999549 83999737 -66783816 - L2 LINE L2 -213 3059 2866 481 167 283 8 chr11 84000246 84000366 -66783187 + MIR SINE MIR 23 175 -87 360 270 11 0 chr11 84000758 84000847 -66782706 - MIR3 SINE MIR -3 205 116 186 43 0 0 chr11 84000850 84000873 -66782680 + (TC)n Simple_repeat Simple_repeat 2 24 0 342 0 0 0 chr11 84000873 84000911 -66782642 + (CA)n Simple_repeat Simple_repeat 2 39 0 383 327 101 29 chr11 84001248 84001456 -66782097 - L2 LINE L2 -24 3248 3026 2077 150 3 0 chr11 84001532 84001839 -66781714 - AluJb SINE Alu -4 308 1 201 350 94 8 chr11 84002354 84002471 -66781082 - L2 LINE L2 -12 3260 3134 2007 128 7 3 chr11 84003163 84003452 -66780101 + AluJb SINE Alu 1 290 -22 182 146 0 24 chr11 84003532 84003573 -66779980 + (TTA)n Simple_repeat Simple_repeat 2 41 0 300 167 0 0 chr11 84003700 84003742 -66779811 - MIR SINE MIR -131 77 36 303 362 6 6 chr11 84004455 84004618 -66778935 + (TATG)n Simple_repeat Simple_repeat 3 165 0 1560 155 16 0 chr11 84004803 84005054 -66778499 - AluSx SINE Alu -57 255 1 310 304 7 67 chr11 84005056 84005191 -66778362 - MIR SINE MIR -70 192 66 1741 168 3 3 chr11 84005295 84005593 -66777960 - AluSg SINE Alu -11 299 2 416 265 39 0 chr11 84005663 84005765 -66777788 + MIR3 SINE MIR 49 154 -54 782 211 29 6 chr11 84006373 84006548 -66777005 - MER104 DNA MER2_type -1 179 1 467 299 77 26 chr11 84006851 84006917 -66776636 + MIR SINE MIR 32 93 -169 2914 126 178 15 chr11 84006917 84007435 -66776118 + MER7C DNA MER2_type 1 602 0 467 299 77 26 chr11 84007435 84007562 -66775991 + MIR SINE MIR 93 235 -27 223 330 31 41 chr11 84007823 84007920 -66775633 + MIR3 SINE MIR 99 194 -14 26 0 0 0 chr11 84007937 84007963 -66775590 + AT_rich Low_complexity Low_complexity 1 26 0 396 291 43 0 chr11 84008000 84008117 -66775436 + MIR SINE MIR 30 151 -111 212 263 75 38 chr11 84008296 84008376 -66775177 + L3 LINE CR1 1486 1568 -9 1003 175 29 152 chr11 84008469 84008812 -66774741 - AluJb SINE Alu -1 301 1 325 319 86 9 chr11 84008892 84009008 -66774545 - L2 LINE L2 -11 3261 3137 245 337 70 0 chr11 84009040 84009126 -66774427 - L2 LINE L2 -37 3235 3144 234 259 0 17 chr11 84009245 84009303 -66774250 + MIR3 SINE MIR 147 203 -5 1814 169 136 24 chr11 84009671 84010091 -66773462 - MLT1C LTR MaLR 0 467 1 304 134 35 254 chr11 84010627 84010769 -66772784 + MER5B DNA MER1_type 34 144 -34 300 302 24 40 chr11 84010946 84011072 -66772481 + MIR SINE MIR 66 189 -73 225 248 193 37 chr11 84011353 84011462 -66772091 + MIR SINE MIR 20 145 -117 2108 81 63 7 chr11 84011714 84011999 -66771554 - AluSc SINE Alu -8 301 1 419 275 60 13 chr11 84012017 84012166 -66771387 - MIR SINE MIR -42 220 65 2337 200 38 58 chr11 84012285 84012835 -66770718 - MLT1F LTR MaLR 0 542 4 466 303 33 0 chr11 84013321 84013443 -66770110 + MIR3 SINE MIR 33 158 -50 239 192 0 51 chr11 84014135 84014213 -66769340 + G-rich Low_complexity Low_complexity 2 75 0 341 229 201 60 chr11 84014448 84014647 -66768906 + MIR SINE MIR 37 262 0 683 209 0 15 chr11 84014654 84014788 -66768765 - FLAM_A SINE Alu -1 132 1 316 347 59 6 chr11 84015479 84015649 -66767904 - L3 LINE CR1 -3 1574 1396 23 33 0 0 chr11 84015663 84015693 -66767860 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr11 84016142 84016166 -66767387 + AT_rich Low_complexity Low_complexity 1 24 0 495 304 6 41 chr11 84016166 84016337 -66767216 - MIR3 SINE MIR -3 205 41 2153 112 0 7 chr11 84016601 84016904 -66766649 + MSTA LTR MaLR 1 301 -127 250 361 41 10 chr11 84017094 84017191 -66766362 + MIR SINE MIR 25 124 -84 1096 225 0 22 chr11 84017309 84017531 -66766022 - MER20 DNA MER1_type -2 217 1 25 0 0 0 chr11 84017567 84017592 -66765961 + AT_rich Low_complexity Low_complexity 1 25 0 641 191 110 0 chr11 84017593 84017729 -66765824 - MIR SINE MIR -15 247 97 460 276 0 16 chr11 84017753 84017876 -66765677 - MIR SINE MIR -30 232 112 366 262 87 0 chr11 84018000 84018103 -66765450 - MIR SINE MIR -70 192 81 257 245 126 63 chr11 84018379 84018522 -66765031 + L2 LINE L2 3154 3305 -8 243 307 27 0 chr11 84018536 84018611 -66764942 - MIR SINE MIR -77 131 55 2413 62 0 47 chr11 84019234 84019554 -66763999 + AluY SINE Alu 1 305 -6 353 262 160 48 chr11 84019574 84019780 -66763773 - MIR SINE MIR -29 233 5 452 96 27 27 chr11 84019806 84019879 -66763674 - L1MB7 LINE L1 -9 6175 6103 265 179 54 0 chr11 84019920 84019976 -66763577 - L1MB7 LINE L1 -77 6107 6049 1542 179 0 65 chr11 84019981 84020126 -66763427 + AluJb SINE Alu 1 115 -197 1925 158 3 0 chr11 84020126 84020430 -66763123 + AluJb SINE Alu 1 305 -7 1542 179 0 65 chr11 84020430 84020608 -66762945 + AluJb SINE Alu 115 303 -9 3266 171 37 7 chr11 84020741 84021237 -66762316 - L1MB7 LINE L1 -362 5816 5336 2273 107 0 0 chr11 84021237 84021547 -66762006 - AluY SINE Alu -1 310 1 3266 171 37 7 chr11 84021547 84022155 -66761398 - L1MB7 LINE L1 -842 5336 4684 431 131 28 28 chr11 84022173 84022280 -66761273 - L1MB7 LINE L1 -1738 4408 4302 28 29 0 0 chr11 84022387 84022422 -66761131 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr11 84022481 84022501 -66761052 + (T)n Simple_repeat Simple_repeat 1 20 0 3243 111 19 17 chr11 84022501 84022970 -66760583 - LTR26B LTR ERV1 -61 470 1 330 191 16 0 chr11 84023483 84023546 -66760007 - LTR29 LTR ERV1 -558 64 1 451 278 0 0 chr11 84023630 84023727 -66759826 - LTR29-int LTR ERV1 -158 6173 6077 418 286 16 87 chr11 84023764 84023820 -66759733 - LTR49-int LTR ERV1 -243 4693 4635 2344 95 0 0 chr11 84023820 84024116 -66759437 + AluSx SINE Alu 1 296 -16 418 286 16 87 chr11 84024116 84024244 -66759309 - LTR49-int LTR ERV1 -301 4635 4522 * 649 149 9 0 chr11 84024216 84024330 -66759223 - LTR49-int LTR ERV1 -562 5769 5655 1616 278 48 73 chr11 84024331 84025040 -66758513 - L1MEc LINE L1 -5064 1332 669 2025 90 47 7 chr11 84025040 84025319 -66758234 - AluSc SINE Alu -19 290 1 1616 278 48 73 chr11 84025319 84025902 -66757651 - L1MEc LINE L1 -5727 669 73 2016 128 20 3 chr11 84026077 84026373 -66757180 + AluSx SINE Alu 1 301 -11 373 296 96 61 chr11 84027325 84027555 -66755998 - L2 LINE L2 -7 3265 3028 378 0 0 0 chr11 84027762 84027804 -66755749 + (TG)n Simple_repeat Simple_repeat 2 43 0 183 235 0 0 chr11 84027808 84027859 -66755694 + GA-rich Low_complexity Low_complexity 3 53 0 324 341 31 61 chr11 84028005 84028234 -66755319 + LTR67 LTR ERVL 78 299 -258 2757 157 29 2 chr11 84028399 84028814 -66754739 - MSTB LTR MaLR 0 426 1 1110 126 5 47 chr11 84029458 84029649 -66753904 - AluSg/x SINE Alu -1 309 127 222 62 0 0 chr11 84029767 84029799 -66753754 + (CA)n Simple_repeat Simple_repeat 2 33 0 385 306 45 0 chr11 84030422 84030556 -66752997 - L3 LINE CR1 -78 1499 1360 286 318 87 48 chr11 84030608 84030734 -66752819 + L2 LINE L2 3141 3271 -1 360 344 65 9 chr11 84030755 84030970 -66752583 - L3 LINE CR1 -235 1342 1116 278 319 11 11 chr11 84031529 84031620 -66751933 + MIR SINE MIR 21 111 -97 450 345 7 0 chr11 84031944 84032089 -66751464 - MIR3 SINE MIR -12 196 51 3633 82 23 2 chr11 84032150 84032665 -66750888 - L1MA2 LINE L1 0 6304 5779 1741 97 8 0 chr11 84032665 84032923 -66750630 - L1MA2 LINE L1 -453 5851 5592 189 107 0 0 chr11 84033342 84033370 -66750183 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 199 225 62 88 chr11 84033602 84033682 -66749871 + MER5B DNA MER1_type 2 79 -99 2862 10 0 0 chr11 84033755 84034066 -66749487 + AluYa5 SINE Alu 1 311 0 241 303 0 0 chr11 84034120 84034209 -66749344 + L1MC4 LINE L1 7923 8011 -31 350 281 73 0 chr11 84034231 84034313 -66749240 - MER5B DNA MER1_type -37 141 54 234 273 182 0 chr11 84034574 84034695 -66748858 + L3b LINE CR1 1174 1316 -267 231 323 11 21 chr11 84034982 84035075 -66748478 - L2 LINE L2 -2 3311 3220 196 336 80 16 chr11 84035070 84035195 -66748358 - MIR SINE MIR -73 135 2 * 540 284 59 0 chr11 84035567 84035736 -66747817 + MIR SINE MIR 81 259 -3 412 262 54 65 chr11 84035761 84035929 -66747624 + L2 LINE L2 2888 3053 -219 190 393 107 8 chr11 84036036 84036158 -66747395 + L2 LINE L2 3133 3266 -6 189 283 100 0 chr11 84036235 84036295 -66747258 - MIR SINE MIR -57 151 86 242 341 0 49 chr11 84036785 84036908 -66746645 - L3 LINE CR1 -13 1564 1448 1108 309 218 24 chr11 84037058 84037974 -66745579 + L2 LINE L2 164 901 -2413 2129 164 36 8 chr11 84037974 84038359 -66745194 + MSTD LTR MaLR 1 396 0 1108 309 218 24 chr11 84038359 84038442 -66745111 + L2 LINE L2 901 967 -2347 2379 98 3 0 chr11 84038442 84038747 -66744806 - AluSx SINE Alu -6 306 1 1108 309 218 24 chr11 84038747 84039013 -66744540 + L2 LINE L2 967 1676 -1638 * 1472 309 100 10 chr11 84038992 84039782 -66743771 - L2 LINE L2 0 3313 2438 372 71 0 0 chr11 84039834 84039890 -66743663 + (CA)n Simple_repeat Simple_repeat 2 57 0 1435 285 86 16 chr11 84039893 84040507 -66743046 + L2 LINE L2 1713 2369 -945 304 256 89 83 chr11 84040502 84040670 -66742883 + L2 LINE L2 3121 3289 -24 * 1784 163 3 17 chr11 84040670 84040970 -66742583 + AluJb SINE Alu 1 296 -16 254 354 12 0 chr11 84041004 84041086 -66742467 - L2 LINE L2 -86 3186 3104 315 306 183 5 chr11 84041191 84041377 -66742176 - MIR SINE MIR -16 246 28 198 289 0 0 chr11 84041570 84041615 -66741938 + L2 LINE L2 3142 3186 -86 252 202 119 36 chr11 84041750 84041834 -66741719 - MIR SINE MIR -40 222 132 212 262 0 0 chr11 84042226 84042268 -66741285 + MIR SINE MIR 42 83 -125 230 327 39 19 chr11 84042362 84042466 -66741087 + L2 LINE L2 3208 3313 0 264 167 0 0 chr11 84042493 84042541 -66741012 + (CATA)n Simple_repeat Simple_repeat 3 50 0 338 200 0 0 chr11 84042549 84042614 -66740939 + Alu SINE Alu 237 301 -1 494 183 21 10 chr11 84042614 84042709 -66740844 + L1M1 LINE L1 5481 5573 -605 360 0 0 0 chr11 84042709 84042749 -66740804 + (CA)n Simple_repeat Simple_repeat 2 41 0 494 183 21 10 chr11 84042749 84042765 -66740788 + L1M1 LINE L1 5573 5587 -591 3611 151 24 27 chr11 84042857 84043161 -66740392 + L1MA4 LINE L1 5185 5488 -812 1704 176 13 33 chr11 84043161 84043468 -66740085 + AluJo SINE Alu 1 301 -11 3611 151 24 27 chr11 84043468 84044000 -66739553 + L1MA4 LINE L1 5488 6020 -280 298 153 0 0 chr11 84043999 84044058 -66739495 + L1MB3 LINE L1 6091 6149 -34 * 206 316 34 17 chr11 84044816 84044933 -66738620 + GA-rich Low_complexity Low_complexity 3 121 0 1664 149 21 7 chr11 84046620 84046902 -66736651 - AluJo SINE Alu -26 286 1 328 250 208 0 chr11 84046906 84047026 -66736527 - MIR SINE MIR -8 254 110 206 350 0 0 chr11 84047039 84047099 -66736454 - L2 LINE L2 -6 3307 3248 265 312 32 8 chr11 84047109 84047234 -66736319 - MER20B DNA MER1_type -640 143 16 482 360 84 38 chr11 84047263 84047630 -66735923 - L2 LINE L2 -480 2834 2451 1825 83 8 4 chr11 84047650 84047892 -66735661 + AluSq SINE Alu 71 313 0 237 132 0 0 chr11 84047892 84047930 -66735623 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 400 279 214 54 chr11 84048141 84048421 -66735132 - L3 LINE CR1 -82 1495 1171 224 200 214 0 chr11 84048406 84048476 -66735077 - L2 LINE L2 -1 3312 3228 * 406 250 60 60 chr11 84048515 84048631 -66734922 - MER5B DNA MER1_type -2 176 61 2111 179 49 22 chr11 84048677 84049517 -66734036 + L1MC2 LINE L1 4738 5605 -739 6097 109 42 48 chr11 84049517 84050138 -66733415 - Tigger3b DNA MER2_type -1797 1231 608 1959 155 0 7 chr11 84050138 84050468 -66733085 - AluSx SINE Alu 0 312 4 6097 109 42 48 chr11 84050468 84050864 -66732689 - Tigger3b DNA MER2_type -2420 608 218 2394 78 0 0 chr11 84050864 84051159 -66732394 + AluY SINE Alu 1 295 -16 6097 109 42 48 chr11 84051159 84051269 -66732284 - Tigger3b DNA MER2_type -2810 218 109 3232 150 73 18 chr11 84051314 84051914 -66731639 + L1MC2 LINE L1 5629 6271 -73 2453 89 0 3 chr11 84051914 84052228 -66731325 - AluSq SINE Alu 0 313 1 3232 150 73 18 chr11 84052228 84052295 -66731258 + L1MC2 LINE L1 6271 6333 -11 685 144 138 11 chr11 84052295 84052476 -66731077 - MER5C DNA MER1_type -90 234 31 1085 298 100 12 chr11 84052498 84052928 -66730625 - L3 LINE CR1 -436 1141 674 195 343 83 19 chr11 84052932 84053040 -66730513 - L2 LINE L2 -15 3257 3143 232 224 0 0 chr11 84053644 84053693 -66729860 + Charlie8 DNA MER1_type 1380 1428 -989 233 375 78 16 chr11 84054261 84054453 -66729100 - L2 LINE L2 -178 3094 2891 276 287 106 11 chr11 84054490 84054584 -66728969 - L2 LINE L2 -2 3270 3168 899 228 87 8 chr11 84054637 84054891 -66728662 + L2 LINE L2 2332 2605 -709 1009 191 27 0 chr11 84054955 84055143 -66728410 + MER20 DNA MER1_type 27 219 0 1090 261 67 69 chr11 84055189 84055803 -66727750 + L2 LINE L2 2686 3295 -18 180 77 0 0 chr11 84055808 84055834 -66727719 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 189 283 17 0 chr11 84056023 84056083 -66727470 + L3 LINE CR1 1374 1434 -143 282 332 87 53 chr11 84056157 84056365 -66727188 + L2 LINE L2 2998 3212 -60 1947 113 28 10 chr11 84056470 84056761 -66726792 + AluSx SINE Alu 1 296 -16 250 312 21 28 chr11 84056795 84056936 -66726617 + MLT1J LTR MaLR 27 166 -345 284 252 195 25 chr11 84057131 84057290 -66726263 + MLT1J LTR MaLR 326 511 0 360 0 0 0 chr11 84057595 84057635 -66725918 + (CA)n Simple_repeat Simple_repeat 2 41 0 1285 177 18 5 chr11 84057864 84058084 -66725469 - MER58A DNA MER1_type -1 223 1 646 256 28 120 chr11 84058090 84058598 -66724955 - LTR67 LTR ERVL -10 547 87 221 325 0 25 chr11 84059081 84059161 -66724392 + L2 LINE L2 3227 3304 -9 23 0 0 0 chr11 84059464 84059487 -66724066 + AT_rich Low_complexity Low_complexity 1 23 0 191 262 49 16 chr11 84059865 84059926 -66723627 + L2 LINE L2 3250 3312 -1 801 180 79 0 chr11 84060025 84060164 -66723389 + FRAM SINE Alu 11 160 -16 486 167 0 0 chr11 84060165 84060243 -66723310 - AluJ/FLAM SINE Alu -234 78 1 198 0 0 0 chr11 84060271 84060293 -66723260 + (T)n Simple_repeat Simple_repeat 1 22 0 254 264 0 0 chr11 84060370 84060423 -66723130 + MIR SINE MIR 94 146 -116 431 250 45 8 chr11 84060594 84060726 -66722827 - MIR SINE MIR -58 204 68 24 0 0 0 chr11 84061030 84061054 -66722499 + AT_rich Low_complexity Low_complexity 1 24 0 697 295 56 68 chr11 84062064 84062472 -66721081 - L2 LINE L2 -244 3028 2612 2296 82 0 29 chr11 84062472 84062778 -66720775 + AluY SINE Alu 1 297 -14 697 295 56 68 chr11 84062778 84062802 -66720751 - L2 LINE L2 -660 2612 2589 1766 245 164 18 chr11 84063143 84064130 -66719423 + L1MC4 LINE L1 6617 7706 -102 23 0 0 0 chr11 84064146 84064169 -66719384 + AT_rich Low_complexity Low_complexity 1 23 0 215 279 16 16 chr11 84064215 84064276 -66719277 - MIR SINE MIR -93 115 55 180 295 33 0 chr11 84064483 84064544 -66719009 + L3 LINE CR1 1501 1563 -14 329 294 211 20 chr11 84064797 84065001 -66718552 + MIR SINE MIR 2 244 -18 1516 157 112 32 chr11 84065018 84065330 -66718223 + MER1B DNA MER1_type 1 337 0 205 368 0 35 chr11 84065553 84065667 -66717886 - MIR SINE MIR -78 130 21 339 339 37 0 chr11 84065928 84066037 -66717516 - MIR3 SINE MIR -11 197 85 1354 222 34 14 chr11 84066292 84066644 -66716909 + L1MB7 LINE L1 3808 4166 -1980 949 200 0 0 chr11 84066689 84066844 -66716709 + FRAM SINE Alu 1 152 -24 672 161 98 39 chr11 84066844 84067049 -66716504 + L1MB7 LINE L1 4189 4405 -1741 2944 171 37 7 chr11 84067070 84067678 -66715875 + L1MB7 LINE L1 4684 5336 -842 2266 107 0 0 chr11 84067678 84067988 -66715565 + AluY SINE Alu 1 310 -1 2944 171 37 7 chr11 84067988 84068484 -66715069 + L1MB7 LINE L1 5336 5816 -362 1553 175 0 74 chr11 84068617 84068795 -66714758 - AluJb SINE Alu -11 301 156 1935 158 3 0 chr11 84068795 84069099 -66714454 - AluJb SINE Alu -7 305 1 1553 175 0 74 chr11 84069099 84069245 -66714308 - AluJb SINE Alu -156 156 1 238 179 54 0 chr11 84069250 84069306 -66714247 + L1MB7 LINE L1 6049 6107 -77 411 96 27 27 chr11 84069344 84069417 -66714136 + L1MB7 LINE L1 6103 6175 -9 343 267 160 48 chr11 84069443 84069649 -66713904 + MIR SINE MIR 5 233 -29 2773 13 0 0 chr11 84069669 84069974 -66713579 - AluYa5 SINE Alu -6 305 1 199 225 62 88 chr11 84070047 84070127 -66713426 - MER5B DNA MER1_type -99 79 2 189 107 0 0 chr11 84070359 84070387 -66713166 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 1794 95 8 0 chr11 84070806 84071070 -66712483 + L1MA2 LINE L1 5592 5857 -447 3605 83 23 2 chr11 84071070 84071579 -66711974 + L1MA2 LINE L1 5779 6304 0 450 345 7 0 chr11 84071639 84071784 -66711769 + MIR3 SINE MIR 51 196 -12 278 319 11 11 chr11 84072108 84072199 -66711354 - MIR SINE MIR -97 111 21 377 340 65 9 chr11 84072758 84072973 -66710580 + L3 LINE CR1 1116 1342 -235 286 318 87 48 chr11 84072994 84073120 -66710433 - L2 LINE L2 -1 3271 3141 385 306 45 0 chr11 84073172 84073306 -66710247 + L3 LINE CR1 1360 1499 -78 222 62 0 0 chr11 84073929 84073961 -66709592 + (TG)n Simple_repeat Simple_repeat 2 33 0 525 313 69 84 chr11 84074154 84074682 -66708871 - L2 LINE L2 -15 3257 2729 2206 86 4 4 chr11 84074682 84074986 -66708567 - AluSc SINE Alu 0 304 1 525 313 69 84 chr11 84074986 84075085 -66708468 - L2 LINE L2 -543 2729 2630 302 333 97 7 chr11 84075160 84075304 -66708249 + MER5B DNA MER1_type 1 157 -21 2152 119 0 0 chr11 84075536 84075830 -66707723 - AluSx SINE Alu -18 294 1 1568 138 25 36 chr11 84075954 84076230 -66707323 + AluJo SINE Alu 1 273 -39 261 0 0 0 chr11 84076236 84076265 -66707288 + (TC)n Simple_repeat Simple_repeat 2 30 0 868 146 34 34 chr11 84076329 84076507 -66707046 - MER58A DNA MER1_type 0 224 47 252 266 161 40 chr11 84076621 84076745 -66706808 - MIR SINE MIR -110 152 14 309 266 48 113 chr11 84077679 84077908 -66705645 + L3 LINE CR1 289 502 -1075 421 267 169 29 chr11 84078081 84078253 -66705300 + MIR SINE MIR 61 256 -6 195 312 140 11 chr11 84078292 84078385 -66705168 + L3 LINE CR1 693 797 -780 1877 146 0 23 chr11 84078749 84079050 -66704503 + AluJo SINE Alu 1 294 -18 2227 103 3 10 chr11 84079052 84079363 -66704190 + AluSq SINE Alu 1 309 -4 2121 136 30 9 chr11 84079691 84080152 -66703401 + L1MB8 LINE L1 5147 5616 -558 2363 151 28 40 chr11 84080155 84080653 -66702900 + L1MB8 LINE L1 5687 6178 0 228 313 80 45 chr11 84080800 84080901 -66702652 + MIR3 SINE MIR 92 200 -8 2358 53 0 0 chr11 84080901 84081209 -66702344 + AluY SINE Alu 1 308 0 346 294 39 0 chr11 84081984 84082086 -66701467 - MIR SINE MIR -63 145 40 330 207 36 121 chr11 84082121 84082180 -66701373 - MER5B DNA MER1_type -1 177 115 2225 104 3 3 chr11 84082180 84082479 -66701074 + AluSq SINE Alu 1 299 -14 2064 133 3 0 chr11 84082479 84082765 -66700788 + AluSx SINE Alu 1 287 -25 180 0 0 0 chr11 84082765 84082785 -66700768 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 330 207 36 121 chr11 84082785 84082863 -66700690 - MER5B DNA MER1_type -60 118 50 2219 88 7 7 chr11 84083683 84083978 -66699575 - AluSx SINE Alu -17 295 1 1107 263 18 5 chr11 84084260 84084641 -66698912 - L1M4 LINE L1 -1925 4221 3836 2822 141 45 0 chr11 84084643 84085127 -66698426 - L1MB7 LINE L1 -19 6165 5660 327 309 55 0 chr11 84085390 84085500 -66698053 + L2 LINE L2 2926 3041 -231 220 286 176 11 chr11 84085549 84085640 -66697913 - MIR SINE MIR -63 145 40 2281 99 3 3 chr11 84085927 84086229 -66697324 + AluSq SINE Alu 1 302 -11 248 253 193 0 chr11 84086446 84086529 -66697024 + MIR3 SINE MIR 81 179 -29 2184 126 3 0 chr11 84086534 84086835 -66696718 - AluSx SINE Alu -10 302 1 206 362 75 43 chr11 84087050 84087238 -66696315 - L2 LINE L2 -213 3059 2866 486 167 283 8 chr11 84087747 84087867 -66695686 + MIR SINE MIR 23 175 -87 189 288 319 38 chr11 84088038 84088198 -66695355 + MIR SINE MIR 17 221 -41 360 270 11 0 chr11 84088259 84088348 -66695205 - MIR3 SINE MIR -3 205 116 186 43 0 0 chr11 84088351 84088374 -66695179 + (TC)n Simple_repeat Simple_repeat 2 24 0 342 0 0 0 chr11 84088374 84088412 -66695141 + (CA)n Simple_repeat Simple_repeat 2 39 0 396 327 101 29 chr11 84088748 84088956 -66694597 - L2 LINE L2 -24 3248 3026 2095 150 3 0 chr11 84089032 84089339 -66694214 - AluJb SINE Alu -4 308 1 202 350 94 8 chr11 84089854 84089971 -66693582 - L2 LINE L2 -12 3260 3134 2010 128 7 3 chr11 84090663 84090952 -66692601 + AluJb SINE Alu 1 290 -22 182 146 0 24 chr11 84091032 84091073 -66692480 + (TTA)n Simple_repeat Simple_repeat 2 41 0 300 167 0 0 chr11 84091200 84091242 -66692311 - MIR SINE MIR -131 77 36 303 362 6 6 chr11 84091955 84092118 -66691435 + (TATG)n Simple_repeat Simple_repeat 3 165 0 1563 155 16 0 chr11 84092303 84092554 -66690999 - AluSx SINE Alu -57 255 1 315 304 7 67 chr11 84092556 84092691 -66690862 - MIR SINE MIR -70 192 66 2219 115 3 0 chr11 84092795 84093091 -66690462 - AluSg SINE Alu -12 298 2 426 265 39 0 chr11 84093161 84093263 -66690290 + MIR3 SINE MIR 49 154 -54 698 211 29 6 chr11 84093871 84094046 -66689507 - MER104 DNA MER2_type -1 179 1 485 310 74 25 chr11 84094340 84094415 -66689138 + MIR SINE MIR 23 93 -169 2650 120 185 23 chr11 84094415 84094933 -66688620 + MER7C DNA MER2_type 1 602 0 485 310 74 25 chr11 84094933 84095060 -66688493 + MIR SINE MIR 93 235 -27 229 330 31 41 chr11 84095321 84095418 -66688135 + MIR3 SINE MIR 99 194 -14 26 0 0 0 chr11 84095435 84095461 -66688092 + AT_rich Low_complexity Low_complexity 1 26 0 406 291 43 0 chr11 84095498 84095615 -66687938 + MIR SINE MIR 30 151 -111 219 263 75 38 chr11 84095794 84095874 -66687679 + L3 LINE CR1 1486 1568 -9 1471 152 30 116 chr11 84095967 84096295 -66687258 - AluJo SINE Alu -10 302 3 323 317 20 10 chr11 84096545 84096646 -66686907 + L2 LINE L2 3193 3294 -19 265 279 135 59 chr11 84096660 84096952 -66686601 - L2 LINE L2 -218 3054 2723 246 306 118 0 chr11 84097107 84097192 -66686361 - MIR SINE MIR -64 198 104 214 286 152 9 chr11 84097403 84097515 -66686038 - MIR SINE MIR -16 246 119 249 308 44 44 chr11 84097953 84098044 -66685509 - MIR SINE MIR -78 130 40 188 191 64 0 chr11 84098302 84098349 -66685204 + MIR3 SINE MIR 159 208 0 277 269 156 36 chr11 84099545 84099803 -66683750 + HAL1 LINE L1 814 1040 -1467 2357 112 3 0 chr11 84099803 84100108 -66683445 + AluSx SINE Alu 1 306 -6 277 269 156 36 chr11 84100108 84100324 -66683229 + HAL1 LINE L1 1040 1345 -1162 358 298 102 42 chr11 84100336 84100632 -66682921 + HAL1b LINE L1 646 863 -721 1183 142 0 11 chr11 84100713 84100896 -66682657 + AluSg/x SINE Alu 124 304 -8 2143 251 76 36 chr11 84100947 84101550 -66682003 - HAL1 LINE L1 -669 1838 1176 2114 106 7 13 chr11 84101550 84101853 -66681700 - AluSc SINE Alu -8 301 1 2143 251 76 36 chr11 84101853 84102270 -66681283 - HAL1 LINE L1 -1331 1176 777 253 176 20 0 chr11 84102269 84102320 -66681233 - L1MB8 LINE L1 -57 6121 6070 * 3048 175 45 14 chr11 84102313 84102980 -66680573 - L1MB7 LINE L1 -136 6048 5361 264 258 15 0 chr11 84103089 84103155 -66680398 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 1724 249 60 71 chr11 84103245 84103688 -66679865 - L1M4c LINE L1 -4559 2400 1953 2417 97 0 0 chr11 84103688 84103996 -66679557 - AluSx SINE Alu -4 308 1 1724 249 60 71 chr11 84103996 84104265 -66679288 - L1M4c LINE L1 -5006 1953 1682 2355 100 0 16 chr11 84104265 84104576 -66678977 - AluSg SINE Alu 0 310 5 1724 249 60 71 chr11 84104576 84105005 -66678548 - L1M4c LINE L1 -5277 1682 1271 246 188 35 24 chr11 84105045 84105130 -66678423 + (TTG)n Simple_repeat Simple_repeat 1 86 0 401 332 77 32 chr11 84105597 84105844 -66677709 - L1M4c LINE L1 -6585 274 17 503 284 67 10 chr11 84106864 84107058 -66676495 - MIR SINE MIR -56 206 2 1188 297 95 12 chr11 84107975 84108506 -66675047 + L2 LINE L2 2702 3279 -34 222 128 0 0 chr11 84108508 84108547 -66675006 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 309 277 74 81 chr11 84108674 84108822 -66674731 - MIR SINE MIR -70 192 46 263 315 24 55 chr11 84109484 84109611 -66673942 + L2 LINE L2 3136 3258 -14 192 40 0 0 chr11 84110575 84110600 -66672953 + (ATG)n Simple_repeat Simple_repeat 1 25 0 224 233 105 23 chr11 84111271 84111357 -66672196 + L2 LINE L2 3128 3220 -93 * 231 241 121 85 chr11 84111338 84111479 -66672074 + L3 LINE CR1 1360 1505 -72 224 333 124 29 chr11 84111645 84111750 -66671803 + L2 LINE L2 3141 3255 -17 408 333 62 6 chr11 84111774 84111951 -66671602 - MIR SINE MIR -65 197 11 384 212 0 35 chr11 84112273 84112358 -66671195 + tRNA-Leu-CTA tRNA tRNA 1 82 -3 208 303 61 20 chr11 84112462 84112561 -66670992 - L2 LINE L2 -1 3271 3169 223 221 15 73 chr11 84112776 84112844 -66670709 + L2 LINE L2 3209 3272 0 1061 260 12 12 chr11 84112874 84113116 -66670437 - MIR SINE MIR -18 244 3 313 242 132 11 chr11 84114172 84114263 -66669290 + MER117 DNA MER1_type 58 159 -38 529 255 21 14 chr11 84114371 84114512 -66669041 - MIR SINE MIR -73 189 48 461 286 136 10 chr11 84114995 84115194 -66668359 + MIR SINE MIR 5 228 -34 484 233 5 70 chr11 84115203 84115349 -66668204 + MIR SINE MIR 12 142 -66 426 366 62 35 chr11 84115363 84115702 -66667851 + L2 LINE L2 2925 3272 0 220 261 0 0 chr11 84116482 84116528 -66667025 - L2 LINE L2 -8 3264 3219 3717 112 52 5 chr11 84116595 84117169 -66666384 - MER7C DNA MER2_type -1 601 1 798 196 0 6 chr11 84117195 84117368 -66666185 + L1ME3 LINE L1 5867 6038 -124 1058 179 127 15 chr11 84117392 84117660 -66665893 + L1ME3 LINE L1 5865 6162 0 196 264 38 0 chr11 84118121 84118174 -66665379 + MIR SINE MIR 93 147 -61 583 170 9 2 chr11 84119544 84119663 -66663890 - L1ME3A LINE L1 -46 6116 5996 217 222 56 28 chr11 84119753 84119825 -66663728 - MIR SINE MIR -101 161 88 583 267 99 52 chr11 84119860 84120092 -66663461 - MIR SINE MIR -6 256 14 2106 130 0 3 chr11 84120403 84120703 -66662850 - AluSx SINE Alu -13 299 1 224 268 62 10 chr11 84120770 84120867 -66662686 - L2 LINE L2 -723 2591 2490 216 304 0 43 chr11 84120933 84121002 -66662551 - L2 LINE L2 -1010 2304 2239 418 270 44 22 chr11 84121567 84121704 -66661849 + MIR SINE MIR 77 216 -46 438 284 65 26 chr11 84122004 84122159 -66661394 - MIR SINE MIR -77 185 25 404 267 50 25 chr11 84122677 84122838 -66660715 + MIR SINE MIR 84 248 -14 330 300 88 41 chr11 84122968 84123138 -66660415 - MIR SINE MIR -65 197 20 2156 123 7 0 chr11 84123238 84123538 -66660015 + AluSg SINE Alu 1 302 -8 204 258 16 48 chr11 84124230 84124292 -66659261 - L2 LINE L2 -9 3263 3204 518 283 75 12 chr11 84124782 84124955 -66658598 + MIR SINE MIR 50 233 -29 199 375 10 39 chr11 84125053 84125157 -66658396 + L2 LINE L2 2966 3066 -206 700 206 163 0 chr11 84125271 84125431 -66658122 - MER5A DNA MER1_type -3 186 1 362 261 98 0 chr11 84125445 84125537 -66658016 + L2 LINE L2 3154 3254 -18 267 286 36 0 chr11 84125846 84125930 -66657623 - L3 LINE CR1 -175 1402 1316 448 324 221 13 chr11 84125971 84126351 -66657202 - L3 LINE CR1 -366 1211 753 401 319 38 19 chr11 84126431 84126591 -66656962 - MIR SINE MIR -94 168 6 186 286 114 14 chr11 84126724 84126794 -66656759 - L3 LINE CR1 -852 725 649 262 316 195 6 chr11 84126989 84127163 -66656390 + L3 LINE CR1 1335 1541 -36 660 93 62 12 chr11 84127394 84127521 -66656032 - MLT1A1 LTR MaLR -255 110 1 252 274 68 0 chr11 84128247 84128320 -66655233 - L2 LINE L2 -49 3223 3146 446 339 31 13 chr11 84128430 84128657 -66654896 - L3 LINE CR1 -183 1394 1164 322 243 85 57 chr11 84129039 84129216 -66654337 - L1ME4a LINE L1 0 6121 5940 433 308 104 0 chr11 84129235 84129417 -66654136 - L2 LINE L2 -178 3135 2935 582 236 87 31 chr11 84129477 84129638 -66653915 - L2 LINE L2 -2883 431 262 368 103 0 103 chr11 84129640 84129718 -66653835 + MADE1 DNA Mariner 10 79 -1 181 224 138 112 chr11 84130023 84130035 -66653518 + MIR SINE MIR 70 80 -182 673 195 221 10 chr11 84130035 84130230 -66653323 - MER106A DNA MER1_type 0 236 1 181 224 138 112 chr11 84130230 84130333 -66653220 + MIR SINE MIR 80 188 -74 2929 154 112 36 chr11 84130412 84131029 -66652524 - L1MB8 LINE L1 -2 6176 5513 327 286 126 8 chr11 84131902 84132021 -66651532 + MIR3 SINE MIR 33 165 -43 233 293 17 0 chr11 84132394 84132452 -66651101 - L2 LINE L2 -11 3261 3203 249 362 117 0 chr11 84132531 84132625 -66650928 - L2 LINE L2 0 3272 3168 22 0 0 0 chr11 84132635 84132657 -66650896 + AT_rich Low_complexity Low_complexity 1 22 0 335 217 165 30 chr11 84133601 84133783 -66649770 - L2 LINE L2 0 3272 3038 3249 246 146 27 chr11 84133792 84135018 -66648535 - L2 LINE L2 -540 2774 1403 550 279 236 4 chr11 84135015 84135248 -66648305 - L3 LINE CR1 -42 1535 1249 * 2195 113 0 29 chr11 84135322 84135633 -66647920 - AluSx SINE Alu -10 302 1 208 268 32 89 chr11 84135641 84135764 -66647789 + MIR SINE MIR 107 222 -40 2298 119 0 0 chr11 84136013 84136325 -66647228 + AluSx SINE Alu 1 312 0 287 289 44 22 chr11 84136366 84136456 -66647097 - MIR SINE MIR -50 212 121 520 82 0 24 chr11 84137066 84137151 -66646402 + (TTCCC)n Simple_repeat Simple_repeat 5 87 0 1153 202 17 45 chr11 84137276 84137563 -66645990 - AluJo SINE Alu -33 279 1 36809 31 2 0 chr11 84137786 84142877 -66640676 - L1PA4 LINE L1 -3 6152 1055 1572 170 52 21 chr11 84142877 84143166 -66640387 - AluJb SINE Alu -10 302 5 222 37 0 0 chr11 84143553 84143580 -66639973 + (CAGGG)n Simple_repeat Simple_repeat 1 27 0 219 345 23 11 chr11 84143627 84143714 -66639839 + L2 LINE L2 3225 3312 -1 608 222 96 78 chr11 84144086 84144316 -66639237 - MIR SINE MIR -16 246 13 333 271 24 0 chr11 84144323 84144408 -66639145 - MIR3 SINE MIR -5 203 117 339 65 0 0 chr11 84144758 84144804 -66638749 + (TC)n Simple_repeat Simple_repeat 1 46 0 297 0 0 0 chr11 84144804 84144837 -66638716 + (TG)n Simple_repeat Simple_repeat 2 34 0 2295 107 0 0 chr11 84145115 84145415 -66638138 + AluSx SINE Alu 1 300 -12 1585 206 87 19 chr11 84145666 84146079 -66637474 - L1ME3 LINE L1 -160 6002 5562 431 145 0 40 chr11 84147646 84147722 -66635831 - L1MC4 LINE L1 -142 7900 7828 300 260 107 41 chr11 84147727 84147923 -66635630 - L1ME3A LINE L1 0 6564 6356 433 232 13 45 chr11 84147973 84148128 -66635425 - L1ME3A LINE L1 -204 6360 6211 1819 221 60 14 chr11 84149380 84149396 -66634157 - MLT2B1 LTR ERVL -56 464 450 1632 130 167 10 chr11 84149396 84149689 -66633864 + MER44D DNA MER2_type 1 609 0 1819 221 60 14 chr11 84149689 84150106 -66633447 - MLT2B1 LTR ERVL -70 450 11 2111 107 0 20 chr11 84150121 84150419 -66633134 + AluSg SINE Alu 4 295 -15 1783 158 45 3 chr11 84150490 84150660 -66632893 - AluJb SINE Alu -9 303 115 198 24 24 49 chr11 84150660 84150701 -66632852 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 1783 158 45 3 chr11 84150701 84150821 -66632732 - AluJb SINE Alu -197 115 1 1435 184 70 93 chr11 84151407 84151793 -66631760 - MLT1E3 LTR MaLR 0 624 278 2431 62 0 10 chr11 84151882 84152187 -66631366 - AluY SINE Alu -9 302 1 226 224 86 35 chr11 84153408 84153466 -66630087 - MIR SINE MIR -95 113 53 2436 85 0 9 chr11 84153982 84154298 -66629255 + AluSp SINE Alu 1 313 0 387 0 0 0 chr11 84155153 84155196 -66628357 + (TA)n Simple_repeat Simple_repeat 1 43 0 2251 98 0 3 chr11 84155196 84155492 -66628061 - AluSg SINE Alu -15 295 1 998 151 89 15 chr11 84156096 84156289 -66627264 - MLT1E3 LTR MaLR -420 204 11 2440 93 3 0 chr11 84156297 84156607 -66626946 + AluSp SINE Alu 2 312 -1 791 198 204 0 chr11 84158226 84158383 -66625170 + MER5A DNA MER1_type 1 189 0 500 246 48 83 chr11 84159001 84159077 -66624476 - MER34B LTR ERV1 -3 562 485 2306 100 6 0 chr11 84159077 84159388 -66624165 + AluSp SINE Alu 1 313 0 500 246 48 83 chr11 84159388 84159563 -66623990 - MER34B LTR ERV1 -80 485 320 225 330 73 0 chr11 84159706 84159815 -66623738 - MER34B LTR ERV1 -444 121 5 1121 222 186 50 chr11 84159864 84160035 -66623518 - L1ME3A LINE L1 -358 6206 6060 2434 161 16 34 chr11 84160035 84160475 -66623078 + MSTB1 LTR MaLR 1 432 0 1121 222 186 50 chr11 84160475 84160798 -66622755 - L1ME3A LINE L1 -504 6060 5652 1198 101 70 89 chr11 84160844 84161102 -66622451 - L1MD1 LINE L1 -4 6238 5986 * 3015 252 25 2 chr11 84161099 84162000 -66621553 - L1ME3A LINE L1 -3016 3524 2605 25 0 0 0 chr11 84162057 84162082 -66621471 + AT_rich Low_complexity Low_complexity 1 25 0 955 136 95 0 chr11 84162341 84162367 -66621186 + MER3 DNA MER1_type 18 59 -150 345 205 50 99 chr11 84162367 84162528 -66621025 - MER3 DNA MER1_type 0 209 57 659 239 54 44 chr11 84162599 84162724 -66620829 + MIR SINE MIR 34 163 -99 774 187 8 0 chr11 84162724 84162847 -66620706 + FLAM_A SINE Alu 1 124 -9 659 239 54 44 chr11 84162847 84162926 -66620627 + MIR SINE MIR 163 240 -22 2118 100 10 29 chr11 84163368 84163677 -66619876 + AluSx SINE Alu 10 312 0 2275 111 0 0 chr11 84164006 84164304 -66619249 + AluSx SINE Alu 1 298 -14 387 0 0 0 chr11 84164537 84164580 -66618973 + (TG)n Simple_repeat Simple_repeat 1 43 0 241 238 38 29 chr11 84165488 84165593 -66617960 + L2 LINE L2 2531 2636 -678 228 323 86 90 chr11 84166210 84166708 -66616845 - L2 LINE L2 -591 2723 2228 1325 137 16 109 chr11 84166784 84166996 -66616557 + L1MA3 LINE L1 6015 6189 -116 2276 100 0 3 chr11 84166996 84167297 -66616256 - AluSq SINE Alu -13 300 1 1325 137 16 109 chr11 84167297 84167405 -66616148 + L1MA3 LINE L1 6189 6305 0 23 33 0 0 chr11 84167423 84167453 -66616100 + AT_rich Low_complexity Low_complexity 1 30 0 552 115 66 74 chr11 84167461 84167583 -66615970 + FLAM_A SINE Alu 2 122 -11 204 111 0 0 chr11 84167583 84167619 -66615934 + (TA)n Simple_repeat Simple_repeat 2 37 0 831 237 9 19 chr11 84168252 84168463 -66615090 - L2 LINE L2 -863 2451 2243 819 248 157 17 chr11 84168691 84169099 -66614454 - L1M4 LINE L1 -3176 2970 2506 2028 138 233 20 chr11 84169127 84169569 -66613984 - LTR10A LTR ERV1 -61 548 13 271 185 0 15 chr11 84169610 84169675 -66613878 - L1M4 LINE L1 -3734 2412 2349 383 252 159 20 chr11 84169855 84170006 -66613547 + MLT1H LTR MaLR 195 366 -183 430 272 70 66 chr11 84170057 84170270 -66613283 - L2 LINE L2 -106 3207 2994 2618 117 66 104 chr11 84170518 84171066 -66612487 + MER4E LTR ERV1 1 527 -252 2068 91 62 0 chr11 84171076 84171350 -66612203 - AluSx SINE Alu -21 291 1 724 225 33 22 chr11 84171835 84172017 -66611536 - MIR SINE MIR -48 214 31 2297 55 41 7 chr11 84172025 84172316 -66611237 - AluY SINE Alu -10 301 1 349 240 137 69 chr11 84172389 84172501 -66611052 - L1MC5 LINE L1 -89 7953 7850 2406 72 20 0 chr11 84172501 84172805 -66610748 - AluSg SINE Alu 0 310 1 349 240 137 69 chr11 84172805 84172867 -66610686 - L1MC5 LINE L1 -192 7850 7653 2093 126 3 3 chr11 84172962 84173255 -66610298 + AluSq SINE Alu 1 293 -20 2314 89 0 13 chr11 84274785 84275088 -66508465 + AluSq SINE Alu 1 299 -14 1988 141 13 16 chr11 84275181 84275494 -66508059 + AluJo SINE Alu 1 312 0 541 228 111 12 chr11 84276024 84276186 -66507367 + MER5B DNA MER1_type 1 178 0 597 162 169 42 chr11 84276202 84276344 -66507209 - MER3 DNA MER1_type 0 209 50 398 310 46 46 chr11 84276484 84276551 -66507002 - MIR SINE MIR -30 232 166 2466 48 0 32 chr11 84276551 84276867 -66506686 + AluY SINE Alu 1 306 -5 398 310 46 46 chr11 84276867 84276996 -66506557 - MIR SINE MIR -95 167 36 1964 161 51 13 chr11 84277042 84277433 -66506120 + L1MB4 LINE L1 5769 6174 -6 434 256 101 0 chr11 84277467 84277596 -66505957 + MER103 DNA DNA 10 151 -15 2392 98 3 0 chr11 84278257 84278564 -66504989 + AluSp SINE Alu 1 308 -5 207 399 76 38 chr11 84278625 84278783 -66504770 + L2 LINE L2 3108 3271 -1 1811 64 5 0 chr11 84278837 84279056 -66504497 + AluSp SINE Alu 1 220 -93 700 164 0 0 chr11 84279057 84279167 -66504386 + AluSg/x SINE Alu 190 299 -13 702 121 0 0 chr11 84279275 84279366 -66504187 + AluSx SINE Alu 2 92 -221 1474 107 0 10 chr11 84279448 84279654 -66503899 + AluSx SINE Alu 91 294 -16 310 299 23 0 chr11 84279654 84279741 -66503812 + L1MC4 LINE L1 6615 6703 -1339 201 74 0 0 chr11 84279741 84279768 -66503785 + (TA)n Simple_repeat Simple_repeat 1 27 0 1689 189 7 14 chr11 84279776 84280073 -66503480 + AluJo SINE Alu 1 295 -17 180 299 221 0 chr11 84280082 84280159 -66503394 + MIR SINE MIR 89 182 -80 1169 145 0 53 chr11 84280259 84280466 -66503087 + L1MB1 LINE L1 4761 4956 -1190 4435 163 27 47 chr11 84280503 84281522 -66502031 + L1MB1 LINE L1 5104 6125 -43 2193 114 0 7 chr11 84281522 84281819 -66501734 + AluSx SINE Alu 1 295 -17 743 318 143 34 chr11 84281828 84282410 -66501143 - L2 LINE L2 -815 2499 1855 2823 151 24 97 chr11 84283844 84284441 -66499112 + MLT2B3 LTR ERVL 2 554 0 569 205 39 8 chr11 84284872 84284999 -66498554 - MLT1A2 LTR MaLR -53 321 191 231 36 0 0 chr11 84285469 84285497 -66498056 + (T)n Simple_repeat Simple_repeat 1 28 0 7172 180 3 14 chr11 84285707 84286316 -66497237 - HERV3 LTR ERV1 -2131 6295 5702 2663 61 0 0 chr11 84286316 84286626 -66496927 - AluY SINE Alu -1 310 1 7172 180 3 14 chr11 84286626 84287165 -66496388 - HERV3 LTR ERV1 -2724 5702 5159 6970 194 23 11 chr11 84287151 84288345 -66495208 + HERV3 LTR ERV1 2928 4135 -4291 * 2138 182 22 27 chr11 84288405 84288867 -66494686 - HERV3 LTR ERV1 -8033 393 1 3656 75 120 8 chr11 84288867 84289401 -66494152 - LTR61 LTR ERV1 0 595 2 1922 123 0 0 chr11 84289401 84289661 -66493892 + AluSc SINE Alu 27 286 -23 2242 97 0 7 chr11 84289764 84290064 -66493489 - AluSc SINE Alu -11 298 1 1515 161 137 30 chr11 84290065 84290437 -66493116 + L1MC3 LINE L1 5912 6323 -1462 20466 156 134 31 chr11 84290448 84293263 -66490290 + L1MA3 LINE L1 22 2544 -5180 390 85 34 0 chr11 84293263 84293322 -66490231 + U7 snRNA snRNA 2 62 -1 20466 156 134 31 chr11 84293322 84294339 -66489214 + L1MA3 LINE L1 2544 3454 -4270 2266 109 0 10 chr11 84294339 84294652 -66488901 + AluSp SINE Alu 1 310 -3 20466 156 134 31 chr11 84294652 84294993 -66488560 + L1MA3 LINE L1 3454 3758 -3966 728 175 17 0 chr11 84294993 84295113 -66488440 + FLAM_C SINE Alu 11 132 -11 20466 156 134 31 chr11 84295113 84297773 -66485780 + L1MA3 LINE L1 3758 7724 0 2433 81 3 0 chr11 84298687 84298984 -66484569 + AluSp SINE Alu 1 298 -15 978 193 5 21 chr11 84299623 84299815 -66483738 + MER20 DNA MER1_type 31 219 0 2147 66 53 40 chr11 84299940 84300244 -66483309 + AluY SINE Alu 2 309 -2 397 241 150 0 chr11 84300396 84300529 -66483024 - L2 LINE L2 -1 3312 3160 244 231 19 56 chr11 84300655 84300763 -66482790 - L2 LINE L2 -410 2904 2801 347 257 155 7 chr11 84300946 84301094 -66482459 - MIR SINE MIR -11 251 82 2314 87 0 0 chr11 84301114 84301390 -66482163 + AluSg SINE Alu 1 276 -34 1990 76 116 0 chr11 84301490 84301793 -66481760 + LTR61 LTR ERV1 256 593 -2 1150 160 0 5 chr11 84301822 84302016 -66481537 - L1MB3 LINE L1 -40 6143 5951 401 153 0 14 chr11 84302043 84302115 -66481438 + MER4A LTR ERV1 28 98 -566 1615 140 10 25 chr11 84302115 84302421 -66481132 + MER4A LTR ERV1 261 620 -44 1256 134 0 0 chr11 84302421 84302600 -66480953 - AluSg/x SINE Alu -2 310 132 283 200 0 0 chr11 84302601 84302656 -66480897 + MER4A LTR ERV1 610 664 0 9984 117 178 171 chr11 84302659 84303524 -66480029 + MER4A-int LTR ERV1 1 859 -5739 2086 125 3 7 chr11 84303524 84303828 -66479725 + AluSx SINE Alu 9 311 -1 1275 129 6 0 chr11 84303830 84304008 -66479545 + AluSg/x SINE Alu 121 299 -11 9984 117 178 171 chr11 84304008 84305448 -66478105 + MER4A-int LTR ERV1 859 2288 -4310 2269 92 20 0 chr11 84305448 84305741 -66477812 - AluSp SINE Alu -14 299 1 9984 117 178 171 chr11 84305741 84306360 -66477193 + MER4A-int LTR ERV1 2288 2901 -3697 2021 138 0 3 chr11 84306360 84306650 -66476903 - AluSx SINE Alu -19 293 5 9984 117 178 171 chr11 84306650 84307199 -66476354 + MER4A-int LTR ERV1 2901 3681 -2917 * 11514 97 53 45 chr11 84307197 84307550 -66476003 + MER4A-int LTR ERV1 3836 4185 -2413 1846 144 20 39 chr11 84307550 84307715 -66475838 - AluSx SINE Alu -13 299 141 2099 89 11 7 chr11 84307715 84307996 -66475557 - AluSc SINE Alu -2 307 26 1846 144 20 39 chr11 84307996 84308135 -66475418 - AluSx SINE Alu -171 141 1 11514 97 53 45 chr11 84308135 84309477 -66474076 + MER4A-int LTR ERV1 4185 5855 -743 2182 123 0 13 chr11 84309477 84309779 -66473774 + AluSx SINE Alu 1 298 -14 11514 97 53 45 chr11 84309779 84310159 -66473394 + MER4A-int LTR ERV1 5855 6231 -367 1974 148 3 0 chr11 84310166 84310450 -66473103 - AluSx SINE Alu -25 287 3 1231 131 0 0 chr11 84310466 84310642 -66472911 - AluSg/x SINE Alu -2 310 135 2621 101 16 0 chr11 84310642 84311010 -66472543 + MER4A-int LTR ERV1 6223 6596 -2 553 133 20 20 chr11 84311017 84311115 -66472438 + MER4A LTR ERV1 1 98 -566 1749 163 3 22 chr11 84311115 84311467 -66472086 + MER4A LTR ERV1 261 664 0 376 221 0 0 chr11 84311468 84311536 -66472017 + L1MC4 LINE L1 7418 7485 -557 587 126 0 0 chr11 84311538 84311625 -66471928 + AluJ/FRAM SINE Alu 217 303 -9 1675 209 76 8 chr11 84311629 84312026 -66471527 + L1MC4 LINE L1 7479 7902 -140 339 129 5 0 chr11 84312028 84312092 -66471461 + L1MC4 LINE L1 7929 8041 -1 2171 93 0 20 chr11 84312164 84312465 -66471088 - AluSx SINE Alu -15 297 3 199 284 15 0 chr11 84312639 84312706 -66470847 - MIR SINE MIR -15 247 180 * 312 228 203 47 chr11 84312687 84312919 -66470634 + L2 LINE L2 2822 3089 -183 1091 61 0 8 chr11 84313437 84313569 -66469984 + AluY SINE Alu 2 132 -179 279 0 0 0 chr11 84313569 84313600 -66469953 + (A)n Simple_repeat Simple_repeat 1 31 0 28 0 0 0 chr11 84313706 84313734 -66469819 + AT_rich Low_complexity Low_complexity 1 28 0 2208 110 7 0 chr11 84313983 84314275 -66469278 + AluSx SINE Alu 1 294 -18 2254 79 45 0 chr11 84314441 84314732 -66468821 - AluSg SINE Alu -6 304 1 1117 150 0 17 chr11 84315397 84315577 -66467976 - AluSg/x SINE Alu -4 306 130 2411 84 3 0 chr11 84315578 84315874 -66467679 - AluSp SINE Alu -16 297 1 1092 92 24 145 chr11 84315902 84315968 -66467585 - AluSq SINE Alu -131 182 110 1428 41 0 0 chr11 84315968 84316137 -66467416 - L1PA6 LINE L1 -5 6149 5981 1092 92 24 145 chr11 84316137 84316277 -66467276 - AluSq SINE Alu -203 110 1 473 130 0 0 chr11 84316287 84316356 -66467197 - AluJ/FRAM SINE Alu -11 301 233 715 264 25 0 chr11 84316459 84316660 -66466893 + MIR SINE MIR 56 261 -1 198 272 240 0 chr11 84316659 84316784 -66466769 + L2 LINE L2 3117 3271 -1 * 778 154 23 23 chr11 84316935 84317065 -66466488 - FLAM_C SINE Alu -11 132 3 1206 188 3 52 chr11 84317147 84317456 -66466097 - AluSx SINE Alu -18 294 1 392 156 0 52 chr11 84317533 84317610 -66465943 + L1MC/D LINE L1 5703 5775 -584 407 291 84 19 chr11 84317750 84317918 -66465635 - L1MC4a LINE L1 -1935 5873 5687 2752 23 0 0 chr11 84317918 84318217 -66465336 + AluY SINE Alu 1 299 -12 407 291 84 19 chr11 84318217 84318261 -66465292 - L1MC4a LINE L1 -2121 5687 5647 736 151 170 25 chr11 84318262 84318421 -66465132 + MER20 DNA MER1_type 1 182 -37 282 116 23 0 chr11 84318490 84318533 -66465020 - MLT1H LTR MaLR 0 549 506 478 197 51 0 chr11 84318812 84318929 -66464624 - L1MB4 LINE L1 -6 6174 6052 775 185 12 0 chr11 84319140 84319302 -66464251 + FRAM SINE Alu 1 164 -2 2376 55 7 26 chr11 84319316 84319659 -66463894 + AluSp SINE Alu 1 313 0 1767 105 13 0 chr11 84319798 84320036 -66463517 + AluSg SINE Alu 11 251 -59 996 114 0 0 chr11 84320136 84320276 -66463277 + AluSp/q SINE Alu 170 309 -4 820 187 48 30 chr11 84320277 84320443 -66463110 + AluSg/x SINE Alu 123 291 -19 1440 220 33 0 chr11 84320453 84320753 -66462800 + AluJo SINE Alu 1 310 -2 2105 124 6 19 chr11 84321009 84321324 -66462229 + AluSx SINE Alu 1 311 -1 2288 92 7 10 chr11 84321566 84321870 -66461683 + AluSx SINE Alu 3 305 -7 180 222 14 69 chr11 84322085 84322157 -66461396 + L2 LINE L2 3193 3260 -12 261 83 0 0 chr11 84322158 84322194 -66461359 + (TGGA)n Simple_repeat Simple_repeat 3 38 0 226 98 0 0 chr11 84322279 84322320 -66461233 - L1MA3 LINE L1 0 6305 6265 611 149 18 36 chr11 84322320 84322488 -66461065 + CT-rich Low_complexity Low_complexity 4 168 0 1329 176 119 0 chr11 84322505 84322749 -66460804 - AluJb SINE Alu -39 273 1 1840 176 3 3 chr11 84322808 84323115 -66460438 - AluJb SINE Alu -5 307 1 350 361 87 9 chr11 84323297 84323527 -66460026 + L3 LINE CR1 1329 1576 -1 371 251 149 28 chr11 84324044 84324259 -66459294 + MIR SINE MIR 14 254 -8 308 239 131 31 chr11 84324347 84324477 -66459076 + MIR3 SINE MIR 17 159 -49 431 149 40 0 chr11 84324509 84324583 -66458970 + MER84 LTR ERVI 1 77 -430 827 109 0 8 chr11 84324587 84324706 -66458847 + MER84 LTR ERVI 2 119 -388 4378 78 12 12 chr11 84324708 84325287 -66458266 + LTR7-int LTR ERV1 4301 4879 -75 2235 138 50 32 chr11 84325287 84325729 -66457824 + LTR7 LTR ERV1 1 450 0 1017 218 26 36 chr11 84325729 84326191 -66457362 + HERVH LTR ERV1 1 459 -7254 21321 131 21 37 chr11 84326217 84329764 -66453789 + HERVH LTR ERV1 802 4292 -3421 282 68 0 136 chr11 84329791 84329850 -66453703 + HERVH LTR ERV1 7663 7713 0 3464 111 28 9 chr11 84329851 84330382 -66453171 + HERVH LTR ERV1 7173 7713 0 2260 155 48 20 chr11 84330382 84330820 -66452733 + LTR7 LTR ERV1 1 450 0 544 64 26 0 chr11 84330820 84330898 -66452655 + MER84-int LTR ERV1 4875 4954 0 1167 209 112 62 chr11 84330898 84331065 -66452488 + MER84 LTR ERV1 1 158 -349 1678 102 4 51 chr11 84331065 84331319 -66452234 + AluSq SINE Alu 2 243 -70 1167 209 112 62 chr11 84331319 84331634 -66451919 + MER84 LTR ERV1 158 507 0 468 197 88 61 chr11 84331635 84331670 -66451883 + MER5B DNA MER1_type 28 61 -117 1705 147 37 4 chr11 84331670 84331942 -66451611 + AluJb SINE Alu 1 281 -31 468 197 88 61 chr11 84331942 84332053 -66451500 + MER5B DNA MER1_type 61 178 0 245 232 0 36 chr11 84332053 84332092 -66451461 + MIR3 SINE MIR 155 191 -17 271 328 177 15 chr11 84332129 84332327 -66451226 - MIR SINE MIR -1 261 32 1171 173 138 9 chr11 84332541 84332766 -66450787 - AluSg1 SINE Alu -23 286 33 2160 101 66 0 chr11 84333141 84333428 -66450125 - AluSx SINE Alu -6 306 1 1383 98 0 5 chr11 84333528 84333712 -66449841 - AluSp SINE Alu -14 299 117 2211 100 47 0 chr11 84333898 84334197 -66449356 + AluSq SINE Alu 1 313 0 1852 178 0 3 chr11 84334324 84334616 -66448937 - AluJb SINE Alu -21 291 1 497 249 97 78 chr11 84334674 84335058 -66448495 - MLT1H LTR MaLR -147 408 64 1434 131 9 26 chr11 84337067 84337296 -66446257 - AluJo SINE Alu -1 311 87 2394 73 0 0 chr11 84337878 84338165 -66445388 + AluY SINE Alu 1 287 -24 1998 138 46 12 chr11 84338362 84338688 -66444865 + MER1B DNA MER1_type 1 337 0 2135 91 77 0 chr11 84338743 84339029 -66444524 + AluSx SINE Alu 1 308 -4 26 0 0 0 chr11 84339141 84339167 -66444386 + AT_rich Low_complexity Low_complexity 1 26 0 934 126 14 7 chr11 84339375 84339518 -66444035 + AluJb SINE Alu 156 299 -13 2047 111 38 0 chr11 84340079 84340368 -66443185 + AluSq SINE Alu 1 300 -13 308 246 51 72 chr11 84341783 84341921 -66441632 - MIR SINE MIR -47 215 81 1330 111 0 0 chr11 84342216 84342387 -66441166 + AluSc SINE Alu 1 171 -138 2291 101 7 0 chr11 84342522 84342820 -66440733 + AluSq SINE Alu 1 300 -13 1937 233 118 50 chr11 84343198 84343954 -66439599 + L2 LINE L2 373 1179 -2135 2413 89 3 0 chr11 84344327 84344631 -66438922 + AluSp SINE Alu 1 305 -8 26 0 0 0 chr11 84344828 84344854 -66438699 + GC_rich Low_complexity Low_complexity 1 26 0 288 0 0 0 chr11 84344872 84344904 -66438649 + (A)n Simple_repeat Simple_repeat 1 32 0 836 231 56 25 chr11 84344904 84345228 -66438325 + L1MB7 LINE L1 5016 5349 -797 852 164 6 53 chr11 84345274 84345445 -66438108 - FRAM SINE Alu -3 163 1 1689 182 0 21 chr11 84345452 84345743 -66437810 - AluJo SINE Alu -17 295 11 3215 174 94 28 chr11 84345755 84346257 -66437296 + L1MB7 LINE L1 5318 5785 -399 2404 68 17 0 chr11 84346257 84346550 -66437003 + AluSx SINE Alu 1 298 -14 3215 174 94 28 chr11 84346550 84346778 -66436775 + L1MB7 LINE L1 5785 6108 -76 2994 131 89 48 chr11 84346778 84347387 -66436166 + MER51A LTR ERV1 1 634 0 3215 174 94 28 chr11 84347387 84347453 -66436100 + L1MB7 LINE L1 6108 6168 -16 2337 88 0 0 chr11 84347539 84347834 -66435719 + AluY SINE Alu 2 296 -15 695 128 0 99 chr11 84347941 84348082 -66435471 - FLAM_C SINE Alu -2 131 5 2303 86 3 13 chr11 84348235 84348548 -66435005 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr11 84348681 84348710 -66434843 + GC_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr11 84348712 84348732 -66434821 + (C)n Simple_repeat Simple_repeat 1 20 0 216 0 0 0 chr11 84348761 84348785 -66434768 + (A)n Simple_repeat Simple_repeat 1 24 0 252 101 0 236 chr11 84348785 84348874 -66434679 - MADE1 DNA Mariner -12 68 1 345 293 7 64 chr11 84350376 84350516 -66433037 - L3 LINE CR1 -187 1390 1259 22 35 0 0 chr11 84350750 84350779 -66432774 + AT_rich Low_complexity Low_complexity 1 29 0 234 0 0 0 chr11 84352186 84352212 -66431341 + (TG)n Simple_repeat Simple_repeat 1 26 0 25 31 0 0 chr11 84354183 84354215 -66429338 + AT_rich Low_complexity Low_complexity 1 32 0 321 68 0 0 chr11 84356500 84356544 -66427009 + (CA)n Simple_repeat Simple_repeat 2 45 0 25 0 0 0 chr11 84357221 84357246 -66426307 + AT_rich Low_complexity Low_complexity 1 25 0 2316 97 0 3 chr11 84358449 84358747 -66424806 - AluSg SINE Alu -13 297 1 2091 134 0 13 chr11 84358747 84359046 -66424507 - AluSx SINE Alu -17 295 1 1504 159 55 7 chr11 84359288 84359597 -66423956 - MER2 DNA MER2_type -20 325 2 1977 227 94 8 chr11 84359614 84360126 -66423427 + L2 LINE L2 2184 2739 -575 198 240 0 20 chr11 84360195 84360245 -66423308 + L2 LINE L2 2750 2798 -516 1036 176 50 5 chr11 84360246 84360445 -66423108 - MER3 DNA MER1_type 0 209 2 339 219 86 19 chr11 84360483 84360588 -66422965 - MER58 DNA MER1_type -55 2365 175 1452 194 45 10 chr11 84360592 84360881 -66422672 + AluJo SINE Alu 1 299 -13 1143 309 86 19 chr11 84360926 84361357 -66422196 + L2 LINE L2 2813 3272 -41 2373 93 3 6 chr11 84361571 84361884 -66421669 + AluSx SINE Alu 1 312 0 189 0 0 0 chr11 84362005 84362026 -66421527 + (A)n Simple_repeat Simple_repeat 1 21 0 357 181 64 64 chr11 84362461 84362555 -66420998 - MIR SINE MIR 0 262 169 1133 151 67 18 chr11 84362902 84363127 -66420426 - MER46A DNA MER2_type 0 236 1 2101 118 3 7 chr11 84363217 84363514 -66420039 - AluSq SINE Alu -17 296 1 1795 111 0 0 chr11 84363542 84363776 -66419777 - AluSq SINE Alu -79 234 1 586 234 99 18 chr11 84364545 84364716 -66418837 + MIR SINE MIR 72 256 -6 573 219 115 36 chr11 84365866 84366058 -66417495 - MIR SINE MIR 0 262 56 2278 85 10 7 chr11 84366215 84366521 -66417032 + AluSp SINE Alu 1 307 -6 1072 104 6 18 chr11 84366521 84366685 -66416868 + AluSg/x SINE Alu 132 293 -17 2446 88 0 3 chr11 84366772 84367078 -66416475 + AluSc SINE Alu 5 309 0 184 232 72 29 chr11 84367571 84367640 -66415913 + MER5C DNA MER1_type 30 101 -223 606 86 43 0 chr11 84367964 84368057 -66415496 - AluSg/x SINE Alu -50 262 166 1010 210 0 15 chr11 84368157 84368362 -66415191 + AluJo SINE Alu 106 307 -5 423 286 63 26 chr11 84368362 84368697 -66414856 - MLT1K LTR MaLR -50 538 160 3044 89 23 50 chr11 84368864 84369347 -66414206 - MER1A DNA MER1_type 0 529 60 236 335 77 26 chr11 84369348 84369542 -66414011 - L3b LINE CR1 -84 1499 1296 702 263 85 40 chr11 84370182 84370782 -66412771 - L1MC5 LINE L1 -36 7925 7299 287 257 20 10 chr11 84370799 84370900 -66412653 - L1MC4a LINE L1 -463 7345 7244 318 224 14 98 chr11 84370943 84371086 -66412467 - L1MC5 LINE L1 -781 7180 7050 2025 149 76 24 chr11 84371089 84371498 -66412055 - MER61C LTR ERV1 0 434 5 12477 99 50 19 chr11 84371508 84372576 -66410977 - MER61C-int LTR ERV1 0 5217 4054 2339 85 3 0 chr11 84372576 84372871 -66410682 + AluSp SINE Alu 1 296 -17 12477 99 50 19 chr11 84372871 84373802 -66409751 - MER61C-int LTR ERV1 -1163 4054 3154 4825 120 8 3 chr11 84373804 84374563 -66408990 + L1PA16 LINE L1 5397 6159 -7 548 254 97 0 chr11 84374562 84374747 -66408806 + L1MC5 LINE L1 7689 7891 -70 * 2390 98 0 0 chr11 84374748 84375044 -66408509 - AluSg SINE Alu -14 296 1 209 362 107 20 chr11 84375479 84375675 -66407878 + L2 LINE L2 2701 2913 -401 303 266 151 36 chr11 84375758 84375897 -66407656 + L2 LINE L2 2937 3091 -181 255 31 0 0 chr11 84376036 84376068 -66407485 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 426 245 31 20 chr11 84376068 84376161 -66407392 + L2 LINE L2 3184 3277 -36 1546 157 70 17 chr11 84376389 84376676 -66406877 + AluJb SINE Alu 1 302 -10 337 252 52 90 chr11 84377807 84377962 -66405591 + L1ME4a LINE L1 5830 5978 -143 2332 99 0 0 chr11 84377962 84378255 -66405298 + AluSg SINE Alu 1 293 -17 1865 175 0 0 chr11 84378420 84378729 -66404824 - AluSx SINE Alu -3 309 1 702 276 79 5 chr11 84378739 84378953 -66404600 - MIR SINE MIR -13 249 20 211 216 0 39 chr11 84378939 84378990 -66404563 + L2 LINE L2 2772 2820 -494 * 814 213 98 79 chr11 84379042 84379174 -66404379 - L1MC5 LINE L1 -32 7929 7801 1718 129 0 23 chr11 84379174 84379438 -66404115 - AluJb SINE Alu -14 298 41 814 213 98 79 chr11 84379438 84379690 -66403863 - L1MC5 LINE L1 -160 7801 7555 1598 171 52 25 chr11 84379690 84379976 -66403577 - AluJo SINE Alu -18 294 1 814 213 98 79 chr11 84379976 84380347 -66403206 - L1MC5 LINE L1 -406 7555 7241 277 203 0 0 chr11 84380348 84380420 -66403133 - L1MC4 LINE L1 -728 7233 7179 253 340 176 26 chr11 84380895 84381236 -66402317 - L2 LINE L2 -74 3198 2807 1334 170 4 0 chr11 84381347 84381576 -66401977 - L1MB5 LINE L1 -8 6166 5937 180 0 0 0 chr11 84382534 84382554 -66400999 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2017 119 33 0 chr11 84382554 84382857 -66400696 - L1PA15 LINE L1 -10 6155 5843 2300 114 0 0 chr11 84382906 84383203 -66400350 + AluSx SINE Alu 1 297 -15 288 130 0 0 chr11 84383373 84383419 -66400134 + (TA)n Simple_repeat Simple_repeat 2 47 0 230 202 0 134 chr11 84383558 84383593 -66399960 - L1MB5 LINE L1 -682 5439 5401 616 176 46 0 chr11 84383593 84383724 -66399829 + L1MA3 LINE L1 6164 6300 -5 230 202 0 134 chr11 84383724 84383807 -66399746 - L1MB5 LINE L1 -720 5401 5337 2348 91 0 3 chr11 84383816 84384123 -66399430 - AluY SINE Alu -5 306 1 243 29 0 0 chr11 84384155 84384189 -66399364 - HY3 scRNA scRNA -2 99 66 1578 174 76 0 chr11 84384247 84384535 -66399018 + AluJo SINE Alu 3 312 0 627 292 121 41 chr11 84384901 84385638 -66397915 - L1MB5 LINE L1 -1353 4793 3998 6566 183 58 33 chr11 84385750 84385962 -66397591 + L1 LINE L1 2819 3024 -3122 1669 186 20 7 chr11 84385962 84386263 -66397290 + AluJb SINE Alu 1 305 -7 6566 183 58 33 chr11 84386263 84386319 -66397234 + L1 LINE L1 3024 3077 -3069 2541 59 3 0 chr11 84386319 84386624 -66396929 + AluY SINE Alu 2 307 -4 6566 183 58 33 chr11 84386624 84387911 -66395642 + L1 LINE L1 3077 4414 -1732 2345 98 0 0 chr11 84387911 84388206 -66395347 + AluSx SINE Alu 1 295 -17 2442 88 0 3 chr11 84388293 84388599 -66394954 + AluSc SINE Alu 5 309 0 1668 170 32 3 chr11 84389901 84390184 -66393369 + AluJo SINE Alu 1 291 -21 2368 123 57 17 chr11 84390795 84391145 -66392408 + THE1B LTR MaLR 1 364 0 1560 90 0 45 chr11 84391168 84391391 -66392162 + AluSq SINE Alu 1 213 -100 1898 100 0 0 chr11 84391392 84391655 -66391898 + AluSx SINE Alu 42 304 0 2054 89 36 21 chr11 84391666 84391946 -66391607 + AluSx SINE Alu 1 284 -28 297 0 0 0 chr11 84391946 84391979 -66391574 + (CA)n Simple_repeat Simple_repeat 2 34 0 1526 103 5 0 chr11 84392106 84392309 -66391244 + AluSq SINE Alu 93 296 -17 1905 166 30 19 chr11 84392312 84392674 -66390879 + MLT2D LTR ERVL 1 366 -48 671 138 33 18 chr11 84392717 84392842 -66390711 + MLT1B LTR MaLR 282 390 0 1670 109 0 0 chr11 84393402 84393622 -66389931 + AluSg/x SINE Alu 85 304 -8 4891 132 131 62 chr11 84393859 84394298 -66389255 + MER41-int LTR ERV1 1280 1687 -4259 2227 98 13 7 chr11 84394298 84394605 -66388948 - AluSg SINE Alu -1 309 1 4891 132 131 62 chr11 84394605 84394831 -66388722 + MER41-int LTR ERV1 1687 1896 -4050 1776 172 0 3 chr11 84394831 84395121 -66388432 + AluJb SINE Alu 2 290 -22 4891 132 131 62 chr11 84395121 84395416 -66388137 + MER41-int LTR ERV1 1896 2307 -3639 699 142 0 0 chr11 84395417 84395537 -66388016 + (TTCC)n Simple_repeat Simple_repeat 1 120 0 2002 140 17 0 chr11 84395537 84395837 -66387716 - AluSx SINE Alu -7 305 1 2831 148 44 17 chr11 84395837 84396356 -66387197 - LTR8 LTR ERV1 -155 536 4 1047 169 26 37 chr11 84396360 84396549 -66387004 - AluJo SINE Alu -125 187 1 323 213 120 0 chr11 84396594 84396669 -66386884 + MER68 LTR ERV1 479 562 0 601 232 60 94 chr11 84396673 84396727 -66386826 + MER68-int LTR ERV1 5 50 -4141 923 237 36 32 chr11 84396727 84397006 -66386547 + HERVL68-D LTR ERVL 1 280 -2757 1227 178 95 83 chr11 84397011 84397345 -66386208 + HERVL68-D LTR ERVL 436 777 -2260 2103 98 25 0 chr11 84397345 84397658 -66385895 - AluSp SINE Alu 0 313 1 1227 178 95 83 chr11 84397658 84397722 -66385831 + HERVL68-D LTR ERVL 777 839 -2198 5174 200 45 44 chr11 84397833 84397902 -66385651 + HERVL68-D LTR ERVL 863 930 -2107 486 0 0 0 chr11 84397902 84397956 -66385597 + (TTC)n Simple_repeat Simple_repeat 2 55 0 5174 200 45 44 chr11 84397956 84397978 -66385575 + HERVL68-D LTR ERVL 930 950 -2087 2191 92 7 11 chr11 84397978 84398261 -66385292 - AluSx SINE Alu -30 282 1 5174 200 45 44 chr11 84398261 84398448 -66385105 + HERVL68-D LTR ERVL 950 1135 -1902 2251 98 7 7 chr11 84398448 84398755 -66384798 - AluSq SINE Alu -6 307 1 5174 200 45 44 chr11 84398755 84399664 -66383889 + HERVL68-D LTR ERVL 1135 2053 -984 274 145 14 14 chr11 84399670 84399739 -66383814 + T-rich Low_complexity Low_complexity 4 72 0 2696 170 35 76 chr11 84399769 84400219 -66383334 + HERVL68-D LTR ERVL 2041 2508 -529 2229 78 7 3 chr11 84400219 84400533 -66383020 + AluY SINE Alu 1 315 0 2696 170 35 76 chr11 84400533 84400583 -66382970 + HERVL68-D LTR ERVL 2508 2558 -479 1707 178 18 0 chr11 84400583 84400889 -66382664 - AluJb SINE Alu 0 311 1 2696 170 35 76 chr11 84400889 84401032 -66382521 + HERVL68-D LTR ERVL 2558 2662 -375 2204 205 109 12 chr11 84401079 84401591 -66381962 + MER68 LTR ERV1 1 562 0 2012 192 80 24 chr11 84401596 84402096 -66381457 + L1M4 LINE L1 3796 4323 -1823 2068 124 0 25 chr11 84402097 84402411 -66381142 + AluSg SINE Alu 1 306 -4 3412 170 26 68 chr11 84402441 84402925 -66380628 - L1MB3 LINE L1 -9 6174 5730 2223 110 7 0 chr11 84402925 84403226 -66380327 + AluSx SINE Alu 1 303 -9 3412 170 26 68 chr11 84403226 84403482 -66380071 - L1MB3 LINE L1 -453 5730 5465 226 277 0 0 chr11 84403479 84403526 -66380027 - L1 LINE L1 -1689 4457 4411 * 2186 123 7 0 chr11 84403543 84403844 -66379709 + AluSq SINE Alu 1 303 -10 765 123 9 0 chr11 84403869 84403975 -66379578 - FLAM_A SINE Alu -14 128 22 294 136 0 0 chr11 84403975 84404019 -66379534 + L1M4 LINE L1 4325 4368 -1778 2078 134 0 0 chr11 84404020 84404336 -66379217 + AluSq SINE Alu 1 316 0 1882 215 2 42 chr11 84404337 84404657 -66378896 + L1M4 LINE L1 4589 4887 -1259 1736 170 37 7 chr11 84404657 84404829 -66378724 - AluSx SINE Alu -9 303 117 180 0 0 0 chr11 84404829 84404849 -66378704 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1736 170 37 7 chr11 84404849 84404970 -66378583 - AluSx SINE Alu -195 117 1 1882 215 2 42 chr11 84404970 84405104 -66378449 + L1M4 LINE L1 4887 5025 -1121 2093 100 4 0 chr11 84405106 84405376 -66378177 + AluSp SINE Alu 29 299 -14 1064 148 11 11 chr11 84405392 84405568 -66377985 + AluSg/x SINE Alu 135 310 0 26 0 0 0 chr11 84405583 84405609 -66377944 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr11 84405643 84405664 -66377889 + AT_rich Low_complexity Low_complexity 1 21 0 1385 129 18 9 chr11 84405797 84406021 -66377532 + AluSx SINE Alu 56 281 -31 23 0 0 0 chr11 84406021 84406044 -66377509 + AT_rich Low_complexity Low_complexity 1 23 0 1741 127 36 22 chr11 84406057 84406333 -66377220 + AluSx SINE Alu 3 282 -30 261 0 0 0 chr11 84406334 84406363 -66377190 + (CA)n Simple_repeat Simple_repeat 2 30 0 1142 171 5 19 chr11 84406489 84406705 -66376848 + AluSg/x SINE Alu 93 305 -7 1535 177 30 37 chr11 84407041 84407340 -66376213 + AluJo SINE Alu 1 297 -15 1674 174 3 7 chr11 84407715 84408002 -66375551 + AluJb SINE Alu 1 286 -26 2357 69 3 3 chr11 84408270 84408558 -66374995 + AluSp SINE Alu 1 288 -25 249 33 0 0 chr11 84409363 84409393 -66374160 + (TG)n Simple_repeat Simple_repeat 2 31 0 333 122 0 0 chr11 84409715 84409772 -66373781 - AluY SINE Alu -218 83 33 1434 156 113 51 chr11 84409854 84410091 -66373462 - AluJb SINE Alu -10 292 34 2202 106 0 3 chr11 84410091 84410384 -66373169 + AluSg SINE Alu 1 292 -18 1434 156 113 51 chr11 84410384 84410421 -66373132 - AluJb SINE Alu -268 34 1 2399 57 0 20 chr11 84410431 84410732 -66372821 - AluY SINE Alu -16 295 1 2139 94 3 29 chr11 84410891 84411200 -66372353 + AluSc SINE Alu 1 301 -8 184 325 0 105 chr11 84411363 84411477 -66372076 + MER5A DNA MER1_type 83 184 -5 206 222 0 23 chr11 84411398 84411457 -66372096 - MER5B DNA MER1_type -105 84 17 22 35 0 0 chr11 84412070 84412099 -66371454 + AT_rich Low_complexity Low_complexity 1 29 0 1894 138 7 10 chr11 84412259 84412550 -66371003 + AluSx SINE Alu 1 290 -22 219 240 13 53 chr11 84412580 84412655 -66370898 - L2 LINE L2 -556 2758 2687 721 173 0 8 chr11 84412674 84412807 -66370746 + FLAM_C SINE Alu 1 132 -1 2421 57 0 14 chr11 84413524 84413821 -66369732 - AluY SINE Alu -18 293 1 1945 117 3 26 chr11 84413978 84414286 -66369267 + AluSc SINE Alu 1 301 -8 184 325 0 105 chr11 84414449 84414563 -66368990 + MER5A DNA MER1_type 83 184 -5 206 222 0 23 chr11 84414484 84414543 -66369010 - MER5B DNA MER1_type -105 84 17 272 250 193 11 chr11 84414564 84414652 -66368901 - MIR3 SINE MIR -41 167 64 2207 92 7 3 chr11 84414657 84414950 -66368603 - AluSc SINE Alu -15 294 1 700 175 134 47 chr11 84415670 84415841 -66367712 - MER20 DNA MER1_type -4 215 30 2530 63 0 3 chr11 84416217 84416520 -66367033 - AluY SINE Alu -9 302 1 959 166 75 0 chr11 84417637 84417824 -66365729 + L1MB8 LINE L1 5970 6170 -8 346 194 0 0 chr11 84418089 84418151 -66365402 + L1MB7 LINE L1 6062 6123 -61 2402 52 14 0 chr11 84418151 84418442 -66365111 - AluY SINE Alu -16 295 1 2151 120 3 0 chr11 84418570 84418862 -66364691 - AluSx SINE Alu -19 293 1 22 35 0 0 chr11 84419439 84419468 -66364085 + AT_rich Low_complexity Low_complexity 1 29 0 2062 125 13 10 chr11 84419628 84419931 -66363622 + AluSq SINE Alu 1 304 -9 2178 121 3 3 chr11 84420644 84420942 -66362611 + AluSp SINE Alu 1 298 -15 1858 129 11 4 chr11 84421222 84421494 -66362059 - AluSx SINE Alu -38 274 1 809 198 12 49 chr11 84421929 84422091 -66361462 - AluJb SINE Alu -22 290 135 2033 125 0 3 chr11 84422256 84422544 -66361009 - AluSx SINE Alu -25 287 1 930 195 242 3 chr11 84423011 84423313 -66360240 + L1MC4 LINE L1 6952 7325 -717 1506 198 108 38 chr11 84423317 84423761 -66359792 + L1MC4 LINE L1 7430 7904 -138 2049 94 8 0 chr11 84424279 84424545 -66359008 + AluSp SINE Alu 1 268 -45 183 287 0 53 chr11 84424943 84425037 -66358516 + MIR SINE MIR 116 204 -58 646 345 67 48 chr11 84425063 84425748 -66357805 + L2 LINE L2 2328 3033 -239 1015 118 0 0 chr11 84426796 84426949 -66356604 - L1MB7 LINE L1 -25 6159 6007 2378 69 6 31 chr11 84427756 84428073 -66355480 - AluSc SINE Alu 0 309 1 1029 224 110 9 chr11 84428110 84428338 -66355215 + MLT1A1 LTR MaLR 1 251 -114 990 248 9 5 chr11 84428335 84428549 -66355004 + MLT1A1 LTR MaLR 151 365 0 * 1495 221 46 15 chr11 84428551 84428876 -66354677 - MER58B DNA MER1_type -5 336 2 2068 138 3 3 chr11 84428953 84429258 -66354295 + AluJb SINE Alu 3 307 -5 244 269 154 19 chr11 84429464 84429485 -66354068 + MER3 DNA MER1_type 27 68 -141 688 211 113 11 chr11 84429485 84429670 -66353883 - MER3 DNA MER1_type 0 209 6 1551 155 52 31 chr11 84429724 84430014 -66353539 + AluJo SINE Alu 1 296 -16 725 205 0 8 chr11 84430029 84430151 -66353402 + FLAM_A SINE Alu 1 121 -12 269 271 213 0 chr11 84430220 84430342 -66353211 - L1ME LINE L1 -286 5835 5688 1563 186 33 33 chr11 84430369 84430729 -66352824 + LTR65 LTR ERV1 1 360 -309 240 184 0 0 chr11 84430963 84431012 -66352541 + CT-rich Low_complexity Low_complexity 4 52 0 747 188 0 0 chr11 84431027 84431139 -66352414 - FLAM_C SINE Alu -30 113 2 26 30 0 0 chr11 84431975 84432008 -66351545 + AT_rich Low_complexity Low_complexity 1 33 0 437 260 47 16 chr11 84432160 84432287 -66351266 - L2 LINE L2 -4 3309 3179 355 330 30 60 chr11 84432434 84432571 -66350982 - L2 LINE L2 -402 2912 2783 2272 101 0 0 chr11 84432571 84432868 -66350685 + AluSc SINE Alu 1 297 -12 355 330 30 60 chr11 84432868 84432963 -66350590 - L2 LINE L2 -531 2783 2687 802 153 0 7 chr11 84432982 84433126 -66350427 + FLAM_C SINE Alu 1 143 0 2172 100 4 0 chr11 84434267 84434579 -66348974 + AluSq SINE Alu 3 315 0 1911 154 4 0 chr11 84434854 84435154 -66348399 - AluSx SINE Alu 0 301 1 21 36 0 0 chr11 84435660 84435688 -66347865 + AT_rich Low_complexity Low_complexity 1 28 0 1506 172 65 28 chr11 84435697 84435988 -66347565 + AluJo SINE Alu 1 302 -10 1586 162 23 68 chr11 84436963 84437272 -66346281 + AluSx SINE Alu 1 295 -17 2133 106 3 23 chr11 84437568 84437871 -66345682 + AluSx SINE Alu 1 297 -15 783 165 0 8 chr11 84438198 84438331 -66345222 + FLAM_A SINE Alu 1 132 -1 222 204 78 144 chr11 84439106 84439273 -66344280 + L2 LINE L2 3081 3236 -77 2324 114 0 0 chr11 84439436 84439742 -66343811 + AluSg SINE Alu 1 306 -4 1632 94 155 0 chr11 84440000 84440272 -66343281 - AluSx SINE Alu 0 310 1 1430 237 21 0 chr11 84440299 84440628 -66342925 - MER58B DNA MER1_type -5 336 1 693 100 0 0 chr11 84441204 84441304 -66342249 + HY3 scRNA scRNA 1 100 -1 1917 163 3 0 chr11 84441442 84441745 -66341808 - AluSx SINE Alu 0 304 1 21 0 0 0 chr11 84441756 84441777 -66341776 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr11 84441788 84441815 -66341738 + (T)n Simple_repeat Simple_repeat 1 27 0 27 29 0 0 chr11 84441827 84441861 -66341692 + GC_rich Low_complexity Low_complexity 1 34 0 225 0 0 0 chr11 84442029 84442054 -66341499 + (A)n Simple_repeat Simple_repeat 1 25 0 650 181 43 0 chr11 84442054 84442170 -66341383 + FLAM_A SINE Alu 6 126 -16 994 167 24 0 chr11 84442565 84442733 -66340820 - AluJb SINE Alu -37 275 104 1003 144 14 0 chr11 84442739 84442885 -66340668 - AluJb SINE Alu -164 148 1 23 0 0 0 chr11 84443262 84443285 -66340268 + AT_rich Low_complexity Low_complexity 1 23 0 1074 159 0 6 chr11 84443607 84443770 -66339783 + AluJb SINE Alu 137 298 -14 715 146 65 0 chr11 84444332 84444455 -66339098 + AluSg SINE Alu 1 131 -179 303 277 213 13 chr11 84444562 84444717 -66338836 + HAL1 LINE L1 1088 1273 -1234 4193 117 7 65 chr11 84445316 84445869 -66337684 + LTR8 LTR ERV1 1 585 -106 2600 45 0 3 chr11 84445869 84446181 -66337372 + AluY SINE Alu 1 311 0 4193 117 7 65 chr11 84446181 84446244 -66337309 + LTR8 LTR ERV1 585 571 -120 2245 76 0 13 chr11 84446244 84446546 -66337007 + AluY SINE Alu 1 298 -13 4193 117 7 65 chr11 84446546 84446662 -66336891 + LTR8 LTR ERV1 570 691 0 614 111 0 0 chr11 84446709 84446799 -66336754 - LTR8 LTR ERV1 0 691 602 2526 58 7 0 chr11 84446799 84447108 -66336445 + AluSp SINE Alu 3 313 0 1286 154 14 0 chr11 84447343 84447557 -66335996 + MER1B DNA MER1_type 123 339 0 862 120 6 60 chr11 84447557 84447724 -66335829 - L1MB3 LINE L1 -338 5845 5688 2729 32 0 0 chr11 84448156 84448467 -66335086 - AluYa5 SINE Alu 0 311 1 721 189 0 0 chr11 84448479 84448601 -66334952 - FLAM_A SINE Alu -11 122 1 2348 99 0 0 chr11 84448605 84448899 -66334654 - AluSc SINE Alu -15 294 1 360 0 0 0 chr11 84449684 84449724 -66333829 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2175 93 0 4 chr11 84449724 84450002 -66333551 - AluSc SINE Alu -32 277 1 4299 189 121 74 chr11 84450457 84451027 -66332526 - L1MD3 LINE L1 -9 7986 7444 377 176 59 0 chr11 84451027 84451112 -66332441 - MLT1F1 LTR MaLR -471 96 7 4299 189 121 74 chr11 84451112 84451857 -66331696 - L1MD3 LINE L1 -551 7444 6521 228 211 118 0 chr11 84451826 84451902 -66331651 - L1MC4a LINE L1 -1324 6484 6400 * 255 345 155 5 chr11 84452897 84453091 -66330462 - MIR SINE MIR -6 256 34 25 31 0 0 chr11 84453553 84453585 -66329968 + AT_rich Low_complexity Low_complexity 1 32 0 840 147 32 0 chr11 84453585 84453742 -66329811 - L1MA3 LINE L1 -5 6300 6139 611 186 26 9 chr11 84453907 84454020 -66329533 - FLAM_A SINE Alu -18 115 1 249 228 106 8 chr11 84454632 84454755 -66328798 - L1ME4a LINE L1 -24 6097 5963 382 199 114 45 chr11 84454854 84455030 -66328523 - L1ME4a LINE L1 -341 5780 5593 22 0 0 0 chr11 84455094 84455116 -66328437 + AT_rich Low_complexity Low_complexity 1 22 0 1136 239 82 29 chr11 84455459 84455944 -66327609 + L1MC4a LINE L1 5468 5978 -143 1605 166 3 10 chr11 84455945 84456246 -66327307 + AluSc SINE Alu 1 299 -10 2194 121 3 3 chr11 84456959 84457257 -66326296 + AluSp SINE Alu 1 298 -15 2537 70 0 0 chr11 84457584 84457886 -66325667 + AluSg SINE Alu 1 302 -8 1688 177 0 33 chr11 84457944 84458243 -66325310 - AluJb SINE Alu -21 291 3 405 202 260 5 chr11 84458282 84458490 -66325063 + L1MC4 LINE L1 7765 8025 -17 2308 88 10 0 chr11 84458490 84458785 -66324768 - AluSx SINE Alu -8 304 7 181 244 113 52 chr11 84459021 84459136 -66324417 + L2 LINE L2 2060 2181 -1133 2266 108 10 0 chr11 84459202 84459508 -66324045 - AluJb SINE Alu -3 309 1 1010 220 37 35 chr11 84459698 84460033 -66323520 + MLT1E2 LTR MaLR 1 388 -238 501 205 0 0 chr11 84460384 84460496 -66323057 + A-rich Low_complexity Low_complexity 1 112 0 234 0 0 0 chr11 84460684 84460710 -66322843 + (A)n Simple_repeat Simple_repeat 1 26 0 287 217 152 11 chr11 84463264 84463356 -66320197 - L1ME4a LINE L1 -47 6074 5970 1786 154 0 63 chr11 84464345 84464677 -66318876 + AluJb SINE Alu 2 312 0 272 227 76 92 chr11 84464887 84465006 -66318547 + MIR3 SINE MIR 50 166 -42 2140 111 7 3 chr11 84465086 84465384 -66318169 - AluSp SINE Alu -14 299 1 259 139 0 0 chr11 84465727 84465770 -66317783 - L2 LINE L2 0 3313 3271 283 200 53 13 chr11 84465835 84465910 -66317643 + MLT1L LTR MaLR 2 79 -536 683 172 127 0 chr11 84466078 84466212 -66317341 + FRAM SINE Alu 22 172 -4 1917 112 83 0 chr11 84466317 84466594 -66316959 + AluSc SINE Alu 1 300 -9 250 274 22 68 chr11 84466608 84466764 -66316789 + MIR SINE MIR 37 185 -77 1170 115 0 17 chr11 84466995 84467169 -66316384 - L1PA15 LINE L1 -1 6164 5994 210 348 61 0 chr11 84467171 84467286 -66316267 + MIR SINE MIR 124 245 -17 211 404 43 11 chr11 84467447 84467541 -66316012 + L2 LINE L2 3102 3198 -74 264 290 57 34 chr11 84467896 84468072 -66315481 + L1ME4a LINE L1 5386 5565 -556 216 103 0 0 chr11 84468079 84468108 -66315445 - L2 LINE L2 -8 3264 3236 357 268 106 34 chr11 84468129 84468394 -66315159 + L1ME4a LINE L1 5831 6114 -7 1616 171 3 40 chr11 84468471 84468770 -66314783 + AluJb SINE Alu 1 288 -24 222 278 0 0 chr11 84468809 84468863 -66314690 + L2 LINE L2 1534 1587 -1727 * 262 320 104 24 chr11 84468856 84468981 -66314572 - L2 LINE L2 -564 2750 2616 304 253 26 142 chr11 84468996 84469186 -66314367 + L2 LINE L2 2736 2903 -411 424 202 161 36 chr11 84469197 84469365 -66314188 - MER58A DNA MER1_type -7 217 29 922 288 82 19 chr11 84469422 84469790 -66313763 + L2 LINE L2 2923 3313 0 1058 181 0 16 chr11 84470025 84470207 -66313346 - AluJo/FRAM SINE Alu -1 311 133 306 116 0 0 chr11 84470207 84470250 -66313303 - Alu SINE Alu -258 43 1 22 0 0 0 chr11 84470482 84470504 -66313049 + AT_rich Low_complexity Low_complexity 1 22 0 991 136 93 5 chr11 84470505 84470719 -66312834 - L1MA8 LINE L1 -12 6279 6047 547 257 113 40 chr11 84470791 84471426 -66312127 - L1MC5 LINE L1 -477 7484 6630 21 36 0 0 chr11 84471466 84471494 -66312059 + AT_rich Low_complexity Low_complexity 1 28 0 1978 95 14 11 chr11 84471721 84472029 -66311524 + AluSq SINE Alu 1 309 0 3439 209 84 29 chr11 84472046 84472433 -66311120 - L1MC4a LINE L1 -74 7734 7370 2346 100 39 25 chr11 84472433 84472792 -66310761 + THE1B LTR MaLR 1 364 0 3439 209 84 29 chr11 84472792 84473445 -66310108 - L1MC4a LINE L1 -438 7370 6636 552 316 24 20 chr11 84473626 84473879 -66309674 - HAL1b LINE L1 -815 533 280 228 163 0 0 chr11 84474815 84474858 -66308695 + CT-rich Low_complexity Low_complexity 2 44 0 1866 158 14 3 chr11 84474896 84475188 -66308365 + AluJb SINE Alu 1 295 -17 1384 204 25 36 chr11 84475188 84475467 -66308086 + AluJo SINE Alu 14 289 -23 2277 121 0 0 chr11 84475775 84476082 -66307471 - AluSx SINE Alu -5 307 1 957 159 45 0 chr11 84476113 84476270 -66307283 - AluJb SINE Alu -14 298 135 1639 169 30 25 chr11 84476324 84476692 -66306861 + L1M2 LINE L1 5363 5732 -559 814 232 36 33 chr11 84476883 84477159 -66306394 - HERVL68 LTR ERVL -2760 277 1 522 232 60 94 chr11 84477159 84477213 -66306340 - MER21-int LTR ERV1 -4141 50 5 296 213 120 0 chr11 84477217 84477292 -66306261 - MER68 LTR ERV1 0 562 479 1063 169 26 37 chr11 84477337 84477526 -66306027 + AluJo SINE Alu 1 187 -125 2595 148 44 17 chr11 84477530 84478049 -66305504 + LTR8 LTR ERV1 4 536 -155 2018 140 17 0 chr11 84478049 84478349 -66305204 + AluSx SINE Alu 1 305 -7 699 142 0 0 chr11 84478349 84478469 -66305084 + (GGAA)n Simple_repeat Simple_repeat 1 120 0 5857 139 20 26 chr11 84478470 84478765 -66304788 - MER57B-int LTR ERV1 -3639 2307 2012 1801 172 0 3 chr11 84478765 84479056 -66304497 - AluJb SINE Alu -21 291 2 5857 139 20 26 chr11 84479056 84479282 -66304271 - MER57B-int LTR ERV1 -3934 2012 1786 2226 98 13 7 chr11 84479282 84479589 -66303964 + AluSg SINE Alu 1 309 -1 5857 139 20 26 chr11 84479589 84481013 -66302540 - MER57B-int LTR ERV1 -4160 1786 186 2170 105 14 7 chr11 84481013 84481309 -66302244 + AluSp SINE Alu 1 298 -15 5857 139 20 26 chr11 84481309 84481494 -66302059 - MER57B-int LTR ERV1 -5760 186 1 3012 122 0 0 chr11 84481494 84481928 -66301625 - MER57B LTR ERV1 0 434 1 1316 164 0 27 chr11 84481965 84482184 -66301369 - AluJb SINE Alu -23 289 77 338 275 40 54 chr11 84482362 84482511 -66301042 + MIR SINE MIR 116 262 0 255 103 0 0 chr11 84482909 84482948 -66300605 + (T)n Simple_repeat Simple_repeat 1 39 0 2193 123 7 0 chr11 84483207 84483508 -66300045 + AluSq SINE Alu 1 303 -10 743 113 9 0 chr11 84483533 84483639 -66299914 - FLAM_A SINE Alu -14 128 22 270 136 0 0 chr11 84483639 84483683 -66299870 + L1M4 LINE L1 4325 4368 -1778 1761 175 0 7 chr11 84483684 84483987 -66299566 + AluSx SINE Alu 1 301 -11 389 94 0 16 chr11 84484397 84484461 -66299092 + (TA)n Simple_repeat Simple_repeat 2 64 0 1031 177 0 0 chr11 84484578 84484742 -66298811 + AluSg/x SINE Alu 126 289 -21 1117 127 51 0 chr11 84484742 84484939 -66298614 + MER57-int LTR ERV1 2612 2818 -4719 259 139 0 0 chr11 84485041 84485084 -66298469 + L2 LINE L2 3271 3313 0 2353 84 7 0 chr11 84485425 84485721 -66297832 + AluSp SINE Alu 1 298 -15 22 0 0 0 chr11 84485757 84485779 -66297774 + AT_rich Low_complexity Low_complexity 1 22 0 612 176 29 22 chr11 84485827 84485963 -66297590 + MER46A DNA MER2_type 30 166 -70 860 99 0 0 chr11 84486633 84486744 -66296809 - AluY SINE Alu -53 258 148 216 103 0 0 chr11 84486918 84486947 -66296606 - L2 LINE L2 -8 3264 3236 357 268 106 34 chr11 84486968 84487233 -66296320 + L1ME4a LINE L1 5831 6114 -7 1616 171 3 40 chr11 84487310 84487609 -66295944 + AluJb SINE Alu 1 288 -24 222 278 0 0 chr11 84487648 84487702 -66295851 + L2 LINE L2 1534 1587 -1727 * 262 320 104 24 chr11 84487695 84487820 -66295733 - L2 LINE L2 -564 2750 2616 304 253 26 142 chr11 84487835 84488025 -66295528 + L2 LINE L2 2736 2903 -411 424 202 161 36 chr11 84488036 84488204 -66295349 - MER58A DNA MER1_type -7 217 29 936 285 82 19 chr11 84488261 84488629 -66294924 + L2 LINE L2 2923 3313 0 1058 181 0 16 chr11 84488864 84489046 -66294507 - AluJo/FRAM SINE Alu -1 311 133 306 116 0 0 chr11 84489046 84489089 -66294464 - Alu SINE Alu -259 43 1 22 0 0 0 chr11 84489321 84489343 -66294210 + AT_rich Low_complexity Low_complexity 1 22 0 992 122 103 14 chr11 84489344 84489558 -66293995 - L1MA8 LINE L1 -12 6279 6047 547 257 113 40 chr11 84489630 84490265 -66293288 - L1MC5 LINE L1 -477 7484 6630 21 36 0 0 chr11 84490305 84490333 -66293220 + AT_rich Low_complexity Low_complexity 1 28 0 1978 95 14 11 chr11 84490560 84490868 -66292685 + AluSq SINE Alu 1 309 0 3439 209 84 29 chr11 84490885 84491272 -66292281 - L1MC4a LINE L1 -74 7734 7370 2346 100 39 25 chr11 84491272 84491631 -66291922 + THE1B LTR MaLR 1 364 0 3439 209 84 29 chr11 84491631 84492284 -66291269 - L1MC4a LINE L1 -438 7370 6636 552 316 24 20 chr11 84492465 84492718 -66290835 - HAL1b LINE L1 -815 533 280 228 163 0 0 chr11 84493654 84493697 -66289856 + CT-rich Low_complexity Low_complexity 2 44 0 1866 158 14 3 chr11 84493735 84494027 -66289526 + AluJb SINE Alu 1 295 -17 1392 201 29 36 chr11 84494027 84494305 -66289248 + AluJo SINE Alu 14 289 -23 2277 121 0 0 chr11 84494613 84494920 -66288633 - AluSx SINE Alu -5 307 1 957 159 45 0 chr11 84494951 84495108 -66288445 - AluJb SINE Alu -14 298 135 4439 148 46 14 chr11 84495162 84496059 -66287494 + L1MA8 LINE L1 5363 6287 -4 1699 180 30 0 chr11 84496068 84496368 -66287185 + AluJb SINE Alu 1 309 -3 21 0 0 0 chr11 84496384 84496405 -66287148 + AT_rich Low_complexity Low_complexity 1 21 0 273 255 51 20 chr11 84496838 84496936 -66286617 - Charlie8 DNA MER1_type -1106 1311 1211 493 268 171 39 chr11 84496949 84497197 -66286356 - Charlie8 DNA MER1_type -1422 995 781 2362 93 3 0 chr11 84497197 84497499 -66286054 + AluSp SINE Alu 1 303 -10 493 268 171 39 chr11 84497499 84497660 -66285893 - Charlie8 DNA MER1_type -1636 781 532 1123 199 108 54 chr11 84497668 84498019 -66285534 + MLT1A2 LTR MaLR 1 370 -4 1458 186 55 7 chr11 84498139 84498429 -66285124 + AluJo SINE Alu 1 304 -8 358 335 91 14 chr11 84498446 84498742 -66284811 - Charlie8 DNA MER1_type -1955 462 144 1836 158 61 83 chr11 84498787 84499282 -66284271 + L1MB7 LINE L1 5660 6143 -41 862 228 13 31 chr11 84500638 84500862 -66282691 + MIR SINE MIR 20 239 -23 364 290 81 16 chr11 84500862 84500986 -66282567 + L2 LINE L2 3166 3297 -16 189 0 0 0 chr11 84500989 84501010 -66282543 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 1832 164 6 22 chr11 84501063 84501380 -66282173 + AluJo SINE Alu 1 312 0 360 292 175 7 chr11 84501560 84501714 -66281839 + MER5A DNA MER1_type 9 188 -1 740 277 69 9 chr11 84501727 84501958 -66281595 + MIR SINE MIR 18 262 0 1701 159 17 30 chr11 84502349 84502650 -66280903 + AluJo SINE Alu 1 297 -15 3934 149 66 30 chr11 84503224 84503754 -66279799 + L1MB3 LINE L1 5291 5865 -318 2114 127 8 59 chr11 84503754 84504109 -66279444 - MER1B DNA MER1_type 0 337 1 3934 149 66 30 chr11 84504109 84504438 -66279115 + L1MB3 LINE L1 5865 6181 -2 197 83 28 0 chr11 84504681 84504717 -66278836 + (CAAAA)n Simple_repeat Simple_repeat 5 41 0 779 163 16 0 chr11 84505493 84505616 -66277937 - AluJb SINE Alu -30 282 158 242 328 0 0 chr11 84506043 84506101 -66277452 + MIR SINE MIR 90 147 -61 202 347 32 11 chr11 84506264 84506359 -66277194 - MIR3 SINE MIR -1 207 111 2340 102 0 10 chr11 84506646 84506951 -66276602 - AluSq SINE Alu -11 302 1 469 240 24 0 chr11 84507435 84507560 -66275993 + L1MB7 LINE L1 5761 5888 -286 772 75 9 0 chr11 84507565 84507672 -66275881 + AluSp SINE Alu 1 108 -205 522 136 71 26 chr11 84507672 84507826 -66275727 + GA-rich Low_complexity Low_complexity 5 165 0 932 227 34 4 chr11 84507827 84508065 -66275488 + L1MB7 LINE L1 5878 6122 -62 536 228 70 13 chr11 84508076 84508234 -66275319 - L2 LINE L2 -711 2603 2437 230 270 135 0 chr11 84508430 84508519 -66275034 - L2 LINE L2 -870 2444 2344 22 0 0 0 chr11 84509156 84509178 -66274375 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr11 84509242 84509275 -66274278 + (A)n Simple_repeat Simple_repeat 1 33 0 759 244 74 41 chr11 84509346 84509588 -66273965 - MIR SINE MIR -10 252 3 819 224 89 65 chr11 84509726 84509941 -66273612 - L1ME2 LINE L1 -1 6163 5955 2314 111 28 14 chr11 84509941 84510300 -66273253 + THE1B LTR MaLR 1 364 0 11249 93 21 2 chr11 84510300 84511850 -66271703 + THE1B-int LTR MaLR 1 1580 0 2017 132 45 28 chr11 84511852 84512208 -66271345 + THE1B LTR MaLR 3 364 0 819 224 89 65 chr11 84512208 84512359 -66271194 - L1ME2 LINE L1 -209 5955 5784 1281 245 38 3 chr11 84512362 84512734 -66270819 - L1ME2 LINE L1 -445 5719 5335 1864 179 0 7 chr11 84512908 84513210 -66270343 - AluJb SINE Alu -12 300 1 411 141 14 0 chr11 84513448 84513519 -66270034 - MER116 DNA Mariner -3 77 6 24 32 0 0 chr11 84513626 84513657 -66269896 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr11 84514581 84514602 -66268951 + AT_rich Low_complexity Low_complexity 1 21 0 2289 83 7 10 chr11 84515083 84515384 -66268169 - AluSc SINE Alu -9 300 1 387 319 199 20 chr11 84515538 84515930 -66267623 - L3 LINE CR1 -195 1382 921 1867 165 0 23 chr11 84516517 84516845 -66266708 + AluSx SINE Alu 5 312 0 414 0 0 0 chr11 84516969 84517015 -66266538 + (TG)n Simple_repeat Simple_repeat 2 47 0 942 83 8 0 chr11 84517195 84517316 -66266237 + AluY SINE Alu 1 122 -189 1025 75 0 0 chr11 84517417 84517550 -66266003 + AluY SINE Alu 172 304 -7 292 268 41 10 chr11 84517623 84517720 -66265833 - MIR SINE MIR -70 192 93 698 196 196 0 chr11 84517793 84517961 -66265592 - MER2 DNA MER2_type -141 204 4 2028 116 7 13 chr11 84518078 84518379 -66265174 - AluSg SINE Alu -11 299 1 1746 82 0 5 chr11 84518418 84518637 -66264916 - AluSg SINE Alu -92 218 1 2328 98 3 0 chr11 84519492 84519789 -66263764 + AluSp SINE Alu 1 298 -15 1842 136 70 0 chr11 84520659 84520931 -66262622 + AluJb SINE Alu 1 291 -21 4504 154 75 24 chr11 84520969 84521679 -66261874 - L1MA8 LINE L1 -2 6289 5514 2404 94 0 0 chr11 84521679 84521976 -66261577 - AluSc SINE Alu -12 297 1 4504 154 75 24 chr11 84521976 84522249 -66261304 - L1MA8 LINE L1 -777 5514 5256 9120 186 43 11 chr11 84522253 84523415 -66260138 - L1MA8 LINE L1 -1101 5045 3922 180 77 0 0 chr11 84523415 84523441 -66260112 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2058 136 0 0 chr11 84523441 84523727 -66259826 - AluSx SINE Alu -26 286 1 1435 168 95 25 chr11 84523729 84524003 -66259550 - AluJo SINE Alu -19 293 1 9120 186 43 11 chr11 84524003 84524957 -66258596 - L1MA8 LINE L1 -2224 3922 2857 21 0 0 0 chr11 84526388 84526409 -66257144 + AT_rich Low_complexity Low_complexity 1 21 0 1398 160 5 0 chr11 84527615 84527834 -66255719 - AluJb SINE Alu -3 309 90 3130 186 33 5 chr11 84528049 84528715 -66254838 + L1MB7 LINE L1 5480 6164 -20 2199 100 3 0 chr11 84529153 84529444 -66254109 - AluSg SINE Alu -18 292 1 1310 246 34 3 chr11 84529650 84529971 -66253582 - MER58B DNA MER1_type -2 339 9 2031 221 36 34 chr11 84530702 84531287 -66252266 + MER67B LTR ERV1 76 661 0 251 259 62 25 chr11 84531289 84531370 -66252183 - MIR3 SINE MIR -32 176 93 239 289 33 0 chr11 84531368 84531458 -66252095 - L2 LINE L2 -3 3269 3177 * 1442 233 48 89 chr11 84531462 84532093 -66251460 + LTR9 LTR ERV1 1 605 -7 3935 95 5 11 chr11 84532097 84532654 -66250899 + MER41A LTR ERV1 1 554 0 3156 151 66 13 chr11 84532654 84532894 -66250659 + LTR8A LTR ERV1 3 229 -462 1128 142 122 0 chr11 84532894 84533099 -66250454 - MER30 DNA MER1_type 0 230 1 3156 151 66 13 chr11 84533099 84533501 -66250052 + LTR8A LTR ERV1 229 628 -63 206 307 140 39 chr11 84533540 84533719 -66249834 - L2 LINE L2 -97 3216 3020 844 147 22 7 chr11 84533728 84533864 -66249689 + AluJ SINE Alu 11 148 -164 1416 174 33 49 chr11 84533866 84534171 -66249382 + AluJb SINE Alu 9 308 -4 231 224 0 0 chr11 84534171 84534220 -66249333 + Alu SINE Alu 119 167 -136 991 188 0 0 chr11 84534220 84534380 -66249173 + AluJ SINE Alu 136 295 -17 906 286 164 42 chr11 84534380 84534904 -66248649 - L2 LINE L2 -425 2889 2302 2156 105 0 0 chr11 84534983 84535260 -66248293 - AluSg SINE Alu -17 293 17 2293 105 3 3 chr11 84535474 84535780 -66247773 + AluSp SINE Alu 1 306 -7 362 239 22 0 chr11 84535796 84535888 -66247665 - MIR SINE MIR -1 261 168 358 257 115 0 chr11 84535888 84536001 -66247552 - L2 LINE L2 -1 3271 3146 318 303 39 131 chr11 84536195 84536585 -66246968 - L2 LINE L2 -15 3257 2904 2437 94 0 0 chr11 84536795 84537104 -66246449 + AluSc SINE Alu 1 309 0 231 320 62 10 chr11 84537153 84537250 -66246303 - L2 LINE L2 -671 2643 2542 1676 170 23 23 chr11 84537251 84537557 -66245996 + AluJo SINE Alu 1 306 -6 1934 211 55 23 chr11 84537741 84538534 -66245019 - L1M3 LINE L1 -413 5767 4962 938 146 7 14 chr11 84538628 84538775 -66244778 + AluJo SINE Alu 3 145 -167 2263 92 0 26 chr11 84538797 84539100 -66244453 + AluSc SINE Alu 1 295 -14 220 286 48 12 chr11 84539140 84539224 -66244329 + MIR SINE MIR 40 126 -136 3122 166 50 26 chr11 84539333 84539978 -66243575 + L1MB7 LINE L1 5509 6168 -16 1953 73 24 112 chr11 84540306 84540636 -66242917 - AluSc SINE Alu -8 301 1 1189 134 0 21 chr11 84541226 84541413 -66242140 - AluJ SINE Alu -10 302 120 237 65 0 0 chr11 84541415 84541446 -66242107 + (T)n Simple_repeat Simple_repeat 1 31 0 580 202 77 0 chr11 84541623 84541727 -66241826 - AluJ SINE Alu -187 115 4 714 223 0 0 chr11 84541889 84542019 -66241534 - FLAM_A SINE Alu -3 130 1 2122 102 0 3 chr11 84542101 84542412 -66241141 - AluSq SINE Alu 0 311 2 566 197 171 25 chr11 84542468 84542707 -66240846 + L1MC5 LINE L1 7630 7903 -58 829 182 18 29 chr11 84543488 84543658 -66239895 - FRAM SINE Alu -8 168 1 1391 181 4 27 chr11 84543673 84543933 -66239620 + AluJo SINE Alu 26 279 -33 192 40 0 0 chr11 84543937 84543962 -66239591 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 608 206 19 0 chr11 84543962 84544069 -66239484 - FLAM_C SINE Alu -33 110 2 2095 99 0 49 chr11 84544460 84544658 -66238895 - AluSq SINE Alu -16 297 118 2135 107 3 10 chr11 84544658 84544966 -66238587 + AluSg SINE Alu 1 306 -4 2095 99 0 49 chr11 84544966 84545071 -66238482 - AluSq SINE Alu -195 118 9 1820 102 114 0 chr11 84545093 84545403 -66238150 - AluSg SINE Alu 0 310 1 403 256 74 25 chr11 84545505 84545626 -66237927 - L2 LINE L2 -9 3263 3137 351 148 0 0 chr11 84545771 84545825 -66237728 - U2 snRNA snRNA -127 61 8 26 0 0 0 chr11 84546122 84546148 -66237405 + AT_rich Low_complexity Low_complexity 1 26 0 390 189 144 45 chr11 84546155 84546266 -66237287 - MER106B DNA MER1_type -908 151 30 426 189 16 82 chr11 84546373 84546495 -66237058 + L1MB4 LINE L1 6067 6180 0 508 157 11 0 chr11 84546498 84546587 -66236966 + L1MB7 LINE L1 6095 6184 0 198 0 0 0 chr11 84546852 84546874 -66236679 + (T)n Simple_repeat Simple_repeat 1 22 0 701 189 24 16 chr11 84547285 84547412 -66236141 - AluJo SINE Alu -96 216 89 260 324 162 6 chr11 84547416 84547589 -66235964 + L2 LINE L2 1923 2122 -1192 1827 123 4 0 chr11 84547675 84547927 -66235626 - AluSx SINE Alu -23 289 37 1033 156 12 0 chr11 84547931 84548091 -66235462 - FRAM SINE Alu -16 160 1 2272 77 42 0 chr11 84548104 84548390 -66235163 - AluSp SINE Alu -15 298 1 293 241 80 18 chr11 84548461 84548573 -66234980 - MLT1L LTR MaLR -26 589 471 450 325 209 48 chr11 84548577 84548912 -66234641 + L2 LINE L2 2876 3264 -8 2251 107 3 0 chr11 84549263 84549562 -66233991 + AluSx SINE Alu 1 300 -12 1182 255 91 9 chr11 84549588 84549825 -66233728 - L1MB7 LINE L1 -155 6029 5813 1993 139 7 14 chr11 84549825 84550119 -66233434 - AluSx SINE Alu -20 292 1 1182 255 91 9 chr11 84550119 84550365 -66233188 - L1MB7 LINE L1 -371 5813 5474 967 219 64 85 chr11 84550356 84550873 -66232680 - L1MB7 LINE L1 -3448 2698 2193 * 236 141 188 16 chr11 84550876 84550940 -66232613 + MER3 DNA MER1_type 135 209 0 232 175 63 16 chr11 84550887 84550950 -66232603 - MER3 DNA MER1_type -106 103 38 * 2101 125 0 0 chr11 84550979 84551276 -66232277 + AluSx SINE Alu 1 297 -15 930 234 75 60 chr11 84551276 84551610 -66231943 + MER58B DNA MER1_type 1 339 -2 2826 270 115 57 chr11 84551682 84552279 -66231274 - L1MEc LINE L1 -4209 2187 1626 2027 140 0 0 chr11 84552279 84552572 -66230981 + AluJo SINE Alu 1 293 -19 2826 270 115 57 chr11 84552572 84554008 -66229545 - L1MEc LINE L1 -4770 1626 35 2323 107 0 0 chr11 84554027 84554325 -66229228 + AluSq SINE Alu 1 298 -15 1989 66 119 31 chr11 84554389 84554675 -66228878 + AluY SINE Alu 1 311 0 35 0 0 0 chr11 84554811 84554846 -66228707 + GC_rich Low_complexity Low_complexity 1 35 0 249 33 0 0 chr11 84554857 84554887 -66228666 + (A)n Simple_repeat Simple_repeat 1 30 0 320 200 200 0 chr11 84554997 84555102 -66228451 - MIR SINE MIR -89 173 48 30 18 0 54 chr11 84555303 84555359 -66228194 + AT_rich Low_complexity Low_complexity 1 53 0 1190 277 84 18 chr11 84555681 84556179 -66227374 + L1MEc LINE L1 38 568 -5828 1284 252 48 3 chr11 84556208 84556518 -66227035 + MER58B DNA MER1_type 3 326 -15 703 264 23 5 chr11 84556520 84556740 -66226813 + L1MEc LINE L1 602 825 -5571 1720 165 3 43 chr11 84556780 84557102 -66226451 + AluJb SINE Alu 4 312 0 22 0 0 0 chr11 84557113 84557135 -66226418 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr11 84557277 84557310 -66226243 + (A)n Simple_repeat Simple_repeat 1 33 0 518 240 51 77 chr11 84557333 84557708 -66225845 + L1MEc LINE L1 810 1174 -5222 251 142 132 85 chr11 84557739 84557845 -66225708 + L1M4 LINE L1 2942 3052 -3094 578 125 135 0 chr11 84557921 84558017 -66225536 + L1 LINE L1 2 110 -6739 525 216 8 52 chr11 84558036 84558170 -66225383 + FLAM_A SINE Alu 13 140 -2 4730 243 59 44 chr11 84558171 84559232 -66224321 + L1 LINE L1 110 1154 -5695 2222 137 57 17 chr11 84559232 84559582 -66223971 - THE1B LTR MaLR 0 364 1 12007 87 31 8 chr11 84559584 84561127 -66222426 - THE1B-int LTR MaLR -2 1578 1 2429 111 48 17 chr11 84561127 84561479 -66222074 - THE1B LTR MaLR 0 364 2 4730 243 59 44 chr11 84561479 84561816 -66221737 + L1 LINE L1 1153 1533 -5316 2520 174 45 53 chr11 84561814 84562330 -66221223 + L1 LINE L1 2401 2920 -3928 * 1782 168 7 19 chr11 84562330 84562639 -66220914 + AluJo SINE Alu 1 305 -7 2520 174 45 53 chr11 84562639 84562774 -66220779 + L1 LINE L1 2920 3055 -3793 1004 106 4 190 chr11 84562774 84563011 -66220542 + 7SK RNA RNA 1 193 0 2520 174 45 53 chr11 84563011 84563532 -66220021 + L1 LINE L1 3055 3561 -3287 812 163 0 7 chr11 84563532 84563673 -66219880 + FLAM_C SINE Alu 1 140 -3 350 234 75 0 chr11 84563680 84563774 -66219779 + L1 LINE L1 3541 3641 -3207 * 5188 177 37 33 chr11 84563769 84564930 -66218623 + L1 LINE L1 4628 5793 -1055 2087 98 29 0 chr11 84564944 84565250 -66218303 - L1P LINE L1 -2589 3557 3243 * 12995 84 10 3 chr11 84565246 84567433 -66216120 + L1PA7 LINE L1 3593 5787 -367 2184 123 13 3 chr11 84567433 84567742 -66215811 + AluSx SINE Alu 1 312 0 276 73 0 0 chr11 84567913 84567942 -66215611 + (A)n Simple_repeat Simple_repeat 1 32 -9 2680 75 75 0 chr11 84567942 84568301 -66215252 + L1PA7 LINE L1 5769 6154 0 276 73 0 0 chr11 84568301 84568312 -66215241 + (A)n Simple_repeat Simple_repeat 31 41 0 800 198 11 76 chr11 84568312 84568554 -66214999 + L1 LINE L1 5802 6027 -821 1856 146 27 7 chr11 84568554 84568848 -66214705 + AluJb SINE Alu 1 300 -12 800 198 11 76 chr11 84568848 84568868 -66214685 + L1 LINE L1 6027 6047 -801 698 225 95 0 chr11 84568865 84569034 -66214519 - L1MB7 LINE L1 -91 6093 5909 * 916 263 44 3 chr11 84569034 84569350 -66214203 + L1M4 LINE L1 3185 3513 -2633 720 225 0 31 chr11 84569355 84569515 -66214038 + FAM SINE Alu 1 49 0 2174 127 0 0 chr11 84569540 84569839 -66213714 + AluSx SINE Alu 5 303 -9 393 114 71 0 chr11 84569843 84569913 -66213640 + L1M4 LINE L1 3503 3577 -2569 1298 213 37 0 chr11 84569914 84570186 -66213367 + AluJo SINE Alu 1 282 -30 673 226 55 49 chr11 84570189 84570353 -66213200 + AluJb SINE Alu 132 296 -16 394 156 0 94 chr11 84570353 84570449 -66213104 + L1M4 LINE L1 3571 3657 -2489 2002 131 3 10 chr11 84570472 84570770 -66212783 + AluSx SINE Alu 1 296 -16 415 182 10 91 chr11 84570770 84570869 -66212684 + MER21B LTR ERV1 16 106 -757 350 246 0 0 chr11 84570867 84570936 -66212617 + MER21B LTR ERV1 19 87 -776 * 1028 202 103 29 chr11 84570952 84571195 -66212358 + MER21B LTR ERV1 47 307 -556 812 156 0 8 chr11 84571210 84571338 -66212215 + FLAM_C SINE Alu 1 127 -16 1436 233 60 40 chr11 84571402 84571822 -66211731 + MER21B LTR ERV1 384 811 -52 2222 83 3 28 chr11 84571877 84572167 -66211386 - AluSq SINE Alu -20 293 11 340 185 15 0 chr11 84572230 84572309 -66211244 + Alu SINE Alu 238 302 0 311 211 0 0 chr11 84572310 84572367 -66211186 + L1M4 LINE L1 3748 3804 -2342 1098 236 76 105 chr11 84572367 84572484 -66211069 + MER21B LTR ERV1 142 261 -602 1862 166 3 0 chr11 84572484 84572773 -66210780 - AluJb SINE Alu -22 290 1 1098 236 76 105 chr11 84572773 84572823 -66210730 + MER21B LTR ERV1 261 311 -552 2189 111 3 0 chr11 84572823 84573112 -66210441 + AluSx SINE Alu 1 290 -22 1098 236 76 105 chr11 84573112 84573124 -66210429 + MER21B LTR ERV1 311 322 -541 1652 176 42 7 chr11 84573124 84573413 -66210140 + AluJo SINE Alu 1 299 -13 1098 236 76 105 chr11 84573413 84573756 -66209797 + MER21B LTR ERV1 322 651 -212 1779 164 25 0 chr11 84573881 84574162 -66209391 + AluJb SINE Alu 1 288 -24 1743 121 111 0 chr11 84574516 84574796 -66208757 + AluSx SINE Alu 1 311 -1 193 280 113 75 chr11 84575130 84575502 -66208051 + L2 LINE L2 2344 2729 -585 1000 185 35 52 chr11 84575800 84576032 -66207521 + AluJo SINE Alu 85 312 0 236 277 157 0 chr11 84576246 84576329 -66207224 - L2 LINE L2 -3 3269 3174 393 183 26 79 chr11 84576752 84576931 -66206622 + L1ME LINE L1 2435 2599 -3783 411 254 0 26 chr11 84577013 84577127 -66206426 - MER5B DNA MER1_type -50 128 18 30 0 0 0 chr11 84577343 84577373 -66206180 + AT_rich Low_complexity Low_complexity 1 30 0 2262 112 7 0 chr11 84577373 84577677 -66205876 + AluSx SINE Alu 1 306 -6 216 0 0 0 chr11 84577849 84577873 -66205680 + (T)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr11 84577902 84577922 -66205631 + (G)n Simple_repeat Simple_repeat 1 20 0 2283 88 13 10 chr11 84579773 84580081 -66203472 - AluSg SINE Alu -1 309 1 349 293 109 14 chr11 84580818 84580965 -66202588 - MIR SINE MIR -73 189 29 1929 226 168 2 chr11 84580992 84581491 -66202062 + MER119 DNA MER1_type 2 583 0 183 288 144 34 chr11 84581502 84581620 -66201933 - MIR3 SINE MIR -10 198 68 356 79 48 16 chr11 84583839 84583902 -66199651 + AluJ/FLAM SINE Alu 1 65 -237 853 101 10 159 chr11 84584132 84584340 -66199213 + FRAM SINE Alu 1 169 -7 1279 187 189 28 chr11 84585160 84585551 -66198002 + L1ME2 LINE L1 5709 6162 -2 2301 103 0 6 chr11 84585665 84585976 -66197577 - AluY SINE Alu -2 309 1 2276 96 7 0 chr11 84586384 84586677 -66196876 - AluSx SINE Alu -8 304 10 1882 128 66 0 chr11 84586793 84587066 -66196487 + AluSg SINE Alu 1 291 -19 26 0 0 0 chr11 84587120 84587146 -66196407 + AT_rich Low_complexity Low_complexity 1 26 0 4620 224 49 41 chr11 84587384 84587516 -66196037 + L1ME LINE L1 3595 3724 -2658 2198 108 3 0 chr11 84587516 84587811 -66195742 + AluSx SINE Alu 1 296 -16 4620 224 49 41 chr11 84587811 84588685 -66194868 + L1ME LINE L1 3724 4589 -1793 2116 131 3 6 chr11 84588685 84588998 -66194555 + AluSx SINE Alu 1 312 0 4620 224 49 41 chr11 84588998 84589079 -66194474 + L1ME LINE L1 4589 4668 -1714 2358 84 3 13 chr11 84589079 84589388 -66194165 + AluY SINE Alu 1 306 -5 4620 224 49 41 chr11 84589388 84589720 -66193833 + L1ME LINE L1 4668 5028 -1354 1389 202 46 60 chr11 84589718 84590084 -66193469 + MLT1B LTR MaLR 14 374 -16 * 1547 206 35 15 chr11 84590098 84590496 -66193057 + L1ME LINE L1 5023 5428 -954 1621 184 30 20 chr11 84590543 84590842 -66192711 + AluJo SINE Alu 3 304 -8 2395 136 18 48 chr11 84590913 84591348 -66192205 + LTR3 LTR ERVK 1 422 -10 593 136 32 28 chr11 84591400 84591549 -66192004 + L1ME LINE L1 5530 5688 -718 945 134 0 40 chr11 84591550 84591699 -66191854 + FLAM_C SINE Alu 1 143 0 264 304 43 0 chr11 84591821 84591913 -66191640 - L1MC/D LINE L1 -665 5577 5482 1517 155 72 8 chr11 84592465 84592729 -66190824 + AluJo SINE Alu 1 281 -31 219 36 0 0 chr11 84592736 84592764 -66190789 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 501 209 2 2 chr11 84593197 84593300 -66190253 - L1ME1 LINE L1 -56 6106 6004 315 305 39 8 chr11 84593503 84593631 -66189922 + L1ME4a LINE L1 5746 5877 -244 6653 140 24 22 chr11 84593651 84594367 -66189186 - Ricksha_b DNA DNA -1613 1241 445 2118 111 7 14 chr11 84594367 84594664 -66188889 - AluSx SINE Alu -17 295 1 6653 140 24 22 chr11 84594664 84595111 -66188442 - Ricksha_b DNA DNA -2409 445 1 1261 175 27 63 chr11 84595223 84595555 -66187998 + MER33 DNA MER1_type 4 323 -1 532 246 30 8 chr11 84596635 84596769 -66186784 + MIR SINE MIR 16 152 -56 937 107 0 0 chr11 84596769 84596890 -66186663 + AluSq/x SINE Alu 1 121 -192 520 318 81 10 chr11 84597173 84597371 -66186182 - MIR SINE MIR -48 214 3 260 300 118 9 chr11 84597520 84597630 -66185923 - MIR SINE MIR -26 236 115 221 296 0 0 chr11 84598606 84598660 -66184893 + L2 LINE L2 2709 2762 -552 758 254 84 14 chr11 84598804 84599017 -66184536 + MIR SINE MIR 18 245 -17 572 200 140 0 chr11 84599055 84599205 -66184348 + MER104 DNA Tc2 1 171 -9 2194 107 0 7 chr11 84599440 84599738 -66183815 + AluSc SINE Alu 1 296 -13 206 132 105 0 chr11 84599749 84599787 -66183766 - L2 LINE L2 -4 3309 3268 2327 94 7 0 chr11 84600141 84600449 -66183104 - AluSq SINE Alu -3 310 1 859 220 14 117 chr11 84600580 84600792 -66182761 + MIR SINE MIR 2 179 -83 2045 135 0 0 chr11 84600792 84601101 -66182452 - AluSx SINE Alu 0 309 1 859 220 14 117 chr11 84601101 84601178 -66182375 + MIR SINE MIR 179 262 0 2235 78 7 11 chr11 84601377 84601660 -66181893 + AluSg1 SINE Alu 1 282 -27 1779 135 10 42 chr11 84601731 84602019 -66181534 + AluJo SINE Alu 9 287 -25 2356 74 0 17 chr11 84602034 84602330 -66181223 + AluY SINE Alu 1 291 -20 22 56 0 0 chr11 84602390 84602426 -66181127 + AT_rich Low_complexity Low_complexity 1 36 0 31 0 0 0 chr11 84602457 84602488 -66181065 + AT_rich Low_complexity Low_complexity 1 31 0 757 137 15 53 chr11 84602488 84602619 -66180934 - AluJb SINE Alu -178 134 9 234 139 0 47 chr11 84602757 84602800 -66180753 - MER57A LTR ERV1 -67 336 296 599 296 111 48 chr11 84602808 84603166 -66180387 - L1MEd LINE L1 -963 1527 1019 2269 106 3 3 chr11 84603166 84603468 -66180085 - AluSp SINE Alu -11 302 1 599 296 111 48 chr11 84603468 84603580 -66179973 - L1MEd LINE L1 -1471 1019 915 252 0 0 0 chr11 84604280 84604308 -66179245 + (T)n Simple_repeat Simple_repeat 1 28 0 405 0 0 0 chr11 84604437 84604482 -66179071 + (CA)n Simple_repeat Simple_repeat 2 46 0 705 157 41 8 chr11 84604494 84604615 -66178938 + Charlie3 DNA MER1_type 2582 2706 -4 2360 78 3 0 chr11 84604809 84605104 -66178449 + AluSp SINE Alu 1 296 -17 217 338 63 7 chr11 84605278 84605420 -66178133 - L2 LINE L2 -471 2843 2694 1003 104 0 8 chr11 84605424 84605558 -66177995 + AluSq/x SINE Alu 1 133 -180 1945 64 16 16 chr11 84605690 84605941 -66177612 + L1PA7 LINE L1 5900 6150 -4 8712 67 141 10 chr11 84606015 84607240 -66176313 + SVA Other Other 1 1386 0 26 0 0 0 chr11 84607433 84607459 -66176094 + AT_rich Low_complexity Low_complexity 1 26 0 214 346 40 0 chr11 84607805 84607906 -66175647 + MIR3 SINE MIR 66 170 -38 2335 224 116 71 chr11 84607978 84608442 -66175111 + L1MEc LINE L1 52 494 -5902 1880 184 0 0 chr11 84608442 84608746 -66174807 + AluJb SINE Alu 1 304 -8 2335 224 116 71 chr11 84608746 84609211 -66174342 + L1MEc LINE L1 494 1023 -5373 1363 158 5 0 chr11 84609211 84609426 -66174127 - AluJo SINE Alu -12 300 85 663 233 75 140 chr11 84609426 84609721 -66173832 + L1MEc LINE L1 1012 1325 -5071 1799 148 0 0 chr11 84609721 84609984 -66173569 + AluSq SINE Alu 1 263 -50 663 233 75 140 chr11 84609984 84610290 -66173263 + L1MEc LINE L1 1325 1649 -4747 1856 172 0 29 chr11 84610290 84610604 -66172949 + AluJo SINE Alu 1 305 -7 663 233 75 140 chr11 84610604 84610646 -66172907 + L1MEc LINE L1 1649 1611 -4785 1898 135 3 14 chr11 84610646 84610976 -66172577 - AluSq SINE Alu 0 327 1 663 233 75 140 chr11 84610976 84611034 -66172519 + L1MEc LINE L1 1610 1670 -4726 254 221 73 29 chr11 84611034 84611102 -66172451 + MIR SINE MIR 34 104 -158 342 235 74 74 chr11 84611122 84611271 -66172282 - MIR SINE MIR -2 260 112 454 303 21 21 chr11 84611321 84611466 -66172087 + MIR SINE MIR 117 261 -1 1941 74 124 4 chr11 84612024 84612282 -66171271 + AluSc SINE Alu 1 289 -10 1238 119 6 6 chr11 84612496 84612716 -66170837 + AluJb SINE Alu 105 324 0 1793 188 0 7 chr11 84612976 84613279 -66170274 + AluJo SINE Alu 1 301 -11 2008 124 10 19 chr11 84613450 84613764 -66169789 - AluSx SINE Alu -1 311 1 1922 98 0 127 chr11 84614288 84614635 -66168918 - AluY SINE Alu -8 303 1 814 240 63 14 chr11 84614635 84614856 -66168697 - MIR SINE MIR -28 234 3 229 204 0 0 chr11 84614860 84614904 -66168649 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 277 309 122 7 chr11 84615308 84615447 -66168106 - MIR SINE MIR -16 246 92 263 329 74 34 chr11 84615419 84615568 -66167985 - L2 LINE L2 -547 2767 2613 * 205 319 56 28 chr11 84616157 84616301 -66167252 - L2 LINE L2 -691 2623 2476 290 281 37 12 chr11 84617259 84617341 -66166212 + L2 LINE L2 2969 3052 -220 1378 125 50 67 chr11 84617487 84617676 -66165877 + MER46A DNA MER2_type 1 187 -2544 195 42 0 0 chr11 84617676 84617700 -66165853 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1378 125 50 67 chr11 84617700 84617750 -66165803 + MER46A DNA MER2_type 187 236 0 4213 264 105 52 chr11 84617770 84619309 -66164244 + L1M2c LINE L1 794 2415 -5151 1861 172 3 0 chr11 84619309 84619612 -66163941 + AluJb SINE Alu 1 304 -8 4213 264 105 52 chr11 84619612 84620339 -66163214 + L1M2c LINE L1 2415 3102 -4464 612 266 63 41 chr11 84620341 84620678 -66162875 + L1M2c LINE L1 3006 3357 -4208 1699 182 7 17 chr11 84620678 84620975 -66162578 - AluJb SINE Alu -13 299 6 612 266 63 41 chr11 84620975 84621196 -66162357 + L1M2c LINE L1 3357 3572 -3993 1988 147 6 6 chr11 84621196 84621508 -66162045 + AluSx SINE Alu 1 312 0 298 97 0 65 chr11 84621573 84621635 -66161918 + Alu SINE Alu 245 302 0 312 239 0 0 chr11 84621635 84621706 -66161847 + L1M2c LINE L1 3598 3668 -3897 * 455 204 28 0 chr11 84621704 84621812 -66161741 + L1M2c LINE L1 4354 4464 -3101 605 139 0 82 chr11 84621853 84621975 -66161578 + FRAM SINE Alu 62 173 -3 1780 187 112 30 chr11 84621975 84622057 -66161496 + L1MA6 LINE L1 5828 5902 -398 7556 54 9 0 chr11 84622057 84623205 -66160348 + L1PA7 LINE L1 4998 6154 0 1780 187 112 30 chr11 84623205 84623550 -66160003 + L1MA6 LINE L1 5902 6290 -10 5046 42 0 2 chr11 84623554 84624131 -66159422 - L1PA4 LINE L1 -1 6154 5579 5114 36 0 0 chr11 84624131 84624924 -66158629 + L1PA4 LINE L1 4778 5570 -585 28 0 0 0 chr11 84624926 84624954 -66158599 + AT_rich Low_complexity Low_complexity 1 28 0 268 341 116 0 chr11 84625134 84625263 -66158290 + MIR SINE MIR 52 195 -67 210 269 0 26 chr11 84625286 84625364 -66158189 + (TATG)n Simple_repeat Simple_repeat 1 76 0 344 255 35 50 chr11 84626214 84626355 -66157198 - MIR SINE MIR -46 216 78 2198 120 0 0 chr11 84626419 84626710 -66156843 - AluSx SINE Alu -16 296 6 1821 62 0 0 chr11 84626722 84626932 -66156621 - AluSc SINE Alu -88 221 12 337 294 33 2 chr11 84626977 84627103 -66156450 + MIR SINE MIR 16 144 -64 39 0 0 0 chr11 84627110 84627149 -66156404 + AT_rich Low_complexity Low_complexity 1 39 0 816 139 0 47 chr11 84627149 84627278 -66156275 - FLAM_C SINE Alu -16 127 5 259 281 0 105 chr11 84627285 84627368 -66156185 + MIR SINE MIR 149 218 -44 2009 187 21 9 chr11 84627368 84627700 -66155853 - MER1B DNA MER1_type -1 336 1 259 281 0 105 chr11 84627700 84627730 -66155823 + MIR SINE MIR 218 250 -12 1860 169 10 0 chr11 84627890 84628192 -66155361 + AluJb SINE Alu 1 305 -7 636 172 30 104 chr11 84628294 84628329 -66155224 + AluJo/FLAM SINE Alu 2 38 -274 2256 94 0 7 chr11 84628329 84628626 -66154927 - AluSc SINE Alu -14 295 1 636 172 30 104 chr11 84628626 84628724 -66154829 + AluJo/FLAM SINE Alu 38 125 -187 204 97 0 0 chr11 84628728 84628759 -66154794 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1803 184 0 7 chr11 84628959 84629253 -66154300 + AluJb SINE Alu 1 292 -20 2104 123 0 3 chr11 84629259 84629594 -66153959 + AluSx SINE Alu 3 336 0 1766 160 11 7 chr11 84629777 84630064 -66153489 - AluJb SINE Alu -22 290 3 1699 170 0 4 chr11 84630117 84630393 -66153160 + AluSx SINE Alu 18 292 -20 2246 106 13 7 chr11 84630494 84630796 -66152757 - AluSx SINE Alu -6 306 3 52 64 0 0 chr11 84631026 84631120 -66152433 + AT_rich Low_complexity Low_complexity 1 94 0 285 345 36 28 chr11 84631301 84631454 -66152099 - MIR3 SINE MIR -51 157 20 279 313 54 27 chr11 84632092 84632239 -66151314 + L2 LINE L2 2210 2360 -954 429 279 259 30 chr11 84632753 84633058 -66150495 - L3 LINE CR1 -398 1179 805 288 77 0 0 chr11 84633977 84634016 -66149537 + (A)n Simple_repeat Simple_repeat 1 39 0 2160 240 77 34 chr11 84634336 84634865 -66148688 - L1ME3A LINE L1 -22 6148 5584 1580 149 123 8 chr11 84634865 84635126 -66148427 + AluJb SINE Alu 2 292 -10 2160 240 77 34 chr11 84635126 84635250 -66148303 - L1ME3A LINE L1 -586 5584 5467 533 266 113 5 chr11 84635397 84635600 -66147953 + MER112 DNA MER1_type 4 228 -32 1249 131 30 15 chr11 84635651 84635849 -66147704 + AluSg/x SINE Alu 85 285 -27 356 119 17 0 chr11 84636147 84636206 -66147347 + Alu SINE Alu 242 301 0 27 62 0 0 chr11 84636391 84636439 -66147114 + AT_rich Low_complexity Low_complexity 1 48 0 1427 181 0 8 chr11 84636520 84636763 -66146790 - AluJb SINE Alu -15 297 57 27 0 0 26 chr11 84637105 84637120 -66146433 + AT_rich Low_complexity Low_complexity 1 15 -22 2431 73 0 22 chr11 84637120 84637436 -66146117 + AluY SINE Alu 1 309 -2 27 0 0 26 chr11 84637436 84637458 -66146095 + AT_rich Low_complexity Low_complexity 15 37 0 251 167 12 36 chr11 84637524 84637608 -66145945 + GA-rich Low_complexity Low_complexity 1 82 0 540 172 43 9 chr11 84637623 84637739 -66145814 + L1MC4 LINE L1 7183 7302 -740 5035 157 60 27 chr11 84637765 84637902 -66145651 - L1MA7 LINE L1 -22 6269 6138 1557 172 47 11 chr11 84637902 84638181 -66145372 - AluJo SINE Alu -18 294 6 5035 157 60 27 chr11 84638181 84639744 -66143809 - L1MA7 LINE L1 -153 6138 4521 1292 150 65 37 chr11 84639744 84639990 -66143563 - L1M3 LINE L1 -587 5596 5344 982 216 122 47 chr11 84640055 84640333 -66143220 + MLT1A2 LTR MaLR 68 366 -8 333 93 37 0 chr11 84640333 84640387 -66143166 - L1M3 LINE L1 -533 5650 5595 1352 195 52 0 chr11 84640395 84640704 -66142849 + L1MC4 LINE L1 7321 7642 -400 2440 122 14 9 chr11 84640704 84641049 -66142504 - MER7A DNA MER2_type -1 345 1 2247 174 3 5 chr11 84641126 84641511 -66142042 + L1MB3 LINE L1 5793 6176 -7 522 193 9 0 chr11 84641514 84641623 -66141930 + L1M4 LINE L1 5591 5700 -474 * 567 151 0 50 chr11 84641620 84641739 -66141814 + L1M4 LINE L1 5636 5748 -426 2067 117 34 3 chr11 84641771 84642069 -66141484 - AluSx SINE Alu -5 307 1 309 149 30 30 chr11 84642080 84642147 -66141406 - L1MB8 LINE L1 -1 6177 6111 245 127 36 0 chr11 84642173 84642228 -66141325 + (TATG)n Simple_repeat Simple_repeat 1 57 0 1499 198 29 4 chr11 84642235 84642508 -66141045 - AluJo SINE Alu -32 280 1 2260 196 73 106 chr11 84642508 84642949 -66140604 - L1MB8 LINE L1 -63 6115 5661 2140 115 7 7 chr11 84642949 84643244 -66140309 + AluSx SINE Alu 1 295 -17 2260 196 73 106 chr11 84643244 84643383 -66140170 - L1MB8 LINE L1 -517 5661 5519 1508 132 0 5 chr11 84643383 84643595 -66139958 + AluJb SINE Alu 3 213 -99 2260 196 73 106 chr11 84643595 84643645 -66139908 - L1MB8 LINE L1 -659 5519 5469 2124 114 13 3 chr11 84643645 84643943 -66139610 - AluSq SINE Alu -12 301 1 2260 196 73 106 chr11 84643943 84644201 -66139352 - L1MB8 LINE L1 -709 5469 5204 1925 127 30 13 chr11 84644201 84644500 -66139053 + AluSx SINE Alu 1 304 -8 2260 196 73 106 chr11 84644500 84644924 -66138629 - L1MB8 LINE L1 -974 5204 4768 1924 171 0 3 chr11 84644924 84645234 -66138319 - AluJb SINE Alu -3 309 1 2260 196 73 106 chr11 84645234 84645254 -66138299 - L1MB8 LINE L1 -1410 4768 4828 2349 101 0 0 chr11 84645254 84645550 -66138003 - AluSx SINE Alu -14 298 3 2260 196 73 106 chr11 84645550 84645630 -66137923 - L1MB8 LINE L1 -1349 4829 4748 5497 199 41 76 chr11 84645631 84645653 -66137900 - L1MB8 LINE L1 -1712 4434 4413 1382 199 3 61 chr11 84645653 84645980 -66137573 - AluJo SINE Alu -4 308 1 5497 199 41 76 chr11 84645980 84647066 -66136487 - L1MB8 LINE L1 -1733 4413 3290 2555 87 0 0 chr11 84647066 84647376 -66136177 - AluSg SINE Alu 0 310 1 5497 199 41 76 chr11 84647376 84647438 -66136115 - L1MB8 LINE L1 -2856 3290 3227 1665 186 10 0 chr11 84647438 84647734 -66135819 - AluJb SINE Alu -12 300 2 5497 199 41 76 chr11 84647734 84648287 -66135266 - L1MB8 LINE L1 -2919 3227 2770 2436 65 0 3 chr11 84648511 84648803 -66134750 + AluSc SINE Alu 1 291 -18 487 260 68 68 chr11 84648857 84649138 -66134415 + L1ME4a LINE L1 5321 5601 -520 798 169 0 0 chr11 84649236 84649354 -66134199 + FLAM_C SINE Alu 1 118 -15 5073 35 0 0 chr11 84649357 84649922 -66133631 + L1PA4 LINE L1 5588 6152 -3 185 0 40 0 chr11 84649932 84649957 -66133596 + (TAAAAA)n Simple_repeat Simple_repeat 3 28 0 292 327 104 8 chr11 84649981 84650241 -66133312 + L1ME4a LINE L1 5619 5903 -218 303 259 122 27 chr11 84650368 84650515 -66133038 + L1ME4a LINE L1 5956 6116 -5 28 61 0 0 chr11 84650515 84650564 -66132989 + AT_rich Low_complexity Low_complexity 1 49 0 2170 128 3 10 chr11 84650714 84651027 -66132526 - AluSx SINE Alu -1 311 1 354 353 70 1 chr11 84651405 84651629 -66131924 + MIR SINE MIR 11 246 -16 1715 171 3 16 chr11 84652024 84652329 -66131224 + AluJb SINE Alu 1 301 -11 183 121 0 0 chr11 84652507 84652530 -66131023 + (A)n Simple_repeat Simple_repeat 1 26 -7 2433 83 0 10 chr11 84652530 84652843 -66130710 + AluSg SINE Alu 1 310 0 183 121 0 0 chr11 84652843 84652852 -66130701 + (A)n Simple_repeat Simple_repeat 25 33 0 1667 180 6 16 chr11 84653205 84653516 -66130037 - AluJo SINE Alu -4 308 1 2334 71 7 10 chr11 84653544 84653839 -66129714 + AluY SINE Alu 1 294 -17 198 128 0 0 chr11 84654005 84654044 -66129509 + (A)n Simple_repeat Simple_repeat 1 39 0 482 153 14 0 chr11 84654574 84654685 -66128868 - AluSg/x SINE Alu 0 321 210 634 315 7 52 chr11 84654830 84654971 -66128582 - LTR67 LTR ERVL -202 355 232 1879 166 7 7 chr11 84654971 84655272 -66128281 - AluJo SINE Alu -11 301 1 634 315 7 52 chr11 84655272 84655419 -66128134 - LTR67 LTR ERVL -325 232 80 283 279 38 0 chr11 84655484 84655563 -66127990 + L2 LINE L2 3226 3307 -6 408 226 265 22 chr11 84655863 84656044 -66127509 + MIR SINE MIR 20 244 -18 313 102 0 234 chr11 84656056 84656132 -66127421 - L1 LINE L1 -3007 3139 3103 644 137 118 0 chr11 84656132 84656234 -66127319 - FLAM_C SINE Alu -15 118 5 313 102 0 234 chr11 84656234 84656285 -66127268 - L1 LINE L1 -3043 3103 3042 1824 146 35 3 chr11 84656291 84656606 -66126947 + L1MB3 LINE L1 5262 5586 -597 300 29 0 0 chr11 84656608 84656643 -66126910 + U2 snRNA snRNA 1 35 -153 3756 128 23 21 chr11 84656643 84657045 -66126508 + L1MB3 LINE L1 5570 5975 -208 2056 131 0 13 chr11 84657045 84657350 -66126203 + AluSx SINE Alu 1 301 -11 3756 128 23 21 chr11 84657350 84657559 -66125994 + L1MB3 LINE L1 5975 6182 -1 879 199 43 0 chr11 84657561 84657722 -66125831 + AluJb SINE Alu 133 300 -12 203 188 0 21 chr11 84657728 84657776 -66125777 + A-rich Low_complexity Low_complexity 1 47 0 214 365 66 7 chr11 84657951 84658088 -66125465 + L2 LINE L2 2566 2710 -604 288 357 84 54 chr11 84658139 84658568 -66124985 + L2 LINE L2 2831 3272 0 6816 51 4 0 chr11 84659043 84659832 -66123721 + L1PA6 LINE L1 5360 6151 -3 596 193 7 141 chr11 84659833 84660102 -66123451 + L1MC5 LINE L1 7701 7933 -28 392 241 156 14 chr11 84660105 84660246 -66123307 + MIR SINE MIR 52 212 -50 1533 177 24 28 chr11 84660419 84660707 -66122846 + AluJo SINE Alu 1 287 -25 999 150 0 0 chr11 84660710 84660850 -66122703 + AluJb SINE Alu 2 141 -171 22 0 0 0 chr11 84660883 84660905 -66122648 + AT_rich Low_complexity Low_complexity 1 22 0 290 304 87 29 chr11 84660958 84661096 -66122457 - L2 LINE L2 -15 3257 3112 588 273 71 49 chr11 84661197 84661464 -66122089 - L2 LINE L2 0 3313 3041 497 261 104 56 chr11 84661475 84661869 -66121684 + L1MC5 LINE L1 7243 7655 -306 1902 113 99 0 chr11 84662041 84662324 -66121229 + AluSx SINE Alu 1 311 -1 263 280 11 11 chr11 84662334 84662427 -66121126 + L1MC5 LINE L1 7808 7900 -61 1290 195 10 54 chr11 84662443 84662768 -66120785 + AluJb SINE Alu 1 312 0 1716 163 23 20 chr11 84662774 84663074 -66120479 + AluSx SINE Alu 1 301 -11 836 186 26 0 chr11 84663076 84663232 -66120321 + AluJo/FRAM SINE Alu 128 287 -25 1784 135 0 35 chr11 84663242 84663553 -66120000 + AluSx SINE Alu 1 300 -12 230 276 187 45 chr11 84663734 84663868 -66119685 + L2 LINE L2 3116 3268 -4 359 289 80 24 chr11 84664279 84664404 -66119149 + MIR SINE MIR 18 148 -63 973 115 8 0 chr11 84664405 84664535 -66119018 - FLAM_C SINE Alu -2 131 1 712 215 15 0 chr11 84664616 84664746 -66118807 - AluSg/x SINE Alu -23 286 155 1052 183 16 0 chr11 84664750 84664936 -66118617 - AluSx SINE Alu -88 224 36 1843 160 24 0 chr11 84664968 84665262 -66118291 + AluSq SINE Alu 6 306 -7 926 105 0 8 chr11 84665270 84665394 -66118159 + AluJb SINE Alu 5 127 -185 21 0 0 0 chr11 84665394 84665415 -66118138 + AT_rich Low_complexity Low_complexity 1 21 0 196 297 122 0 chr11 84665514 84665588 -66117965 + MIR SINE MIR 1 83 -179 454 145 12 1 chr11 84666387 84666478 -66117075 + L1MB3 LINE L1 6060 6162 -21 214 336 168 8 chr11 84666626 84666745 -66116808 + MER5A DNA MER1_type 46 183 -6 234 250 129 48 chr11 84667059 84667183 -66116370 + MIR SINE MIR 63 196 -66 2374 83 0 7 chr11 84668391 84668693 -66114860 + AluSx SINE Alu 1 300 -12 1936 112 26 20 chr11 84668928 84669231 -66114322 + AluSx SINE Alu 3 307 -5 2238 110 0 0 chr11 84669231 84669541 -66114012 + AluSx SINE Alu 1 310 -2 532 193 88 18 chr11 84669693 84669864 -66113689 - HsTC2 DNA Tc2 0 1899 1717 * 763 251 37 0 chr11 84669861 84670048 -66113505 - HsTC2 DNA Tc2 -1570 328 135 1970 133 3 3 chr11 84670139 84670457 -66113096 + AluJb SINE Alu 1 318 0 216 0 0 0 chr11 84670693 84670717 -66112836 + (TG)n Simple_repeat Simple_repeat 1 24 0 1349 149 9 5 chr11 84670734 84670949 -66112604 - AluSg/x SINE Alu -11 301 86 2829 139 5 5 chr11 84670949 84671359 -66112194 - MER1A DNA MER1_type -119 410 1 1782 119 108 7 chr11 84672160 84672437 -66111116 - AluSg SINE Alu -5 305 1 826 298 87 38 chr11 84672791 84673184 -66110369 + MLT1J LTR MaLR 60 471 -40 2005 123 43 7 chr11 84673359 84673659 -66109894 + AluSx SINE Alu 1 311 -1 368 313 0 26 chr11 84673671 84673786 -66109767 + MIR SINE MIR 3 114 -148 204 200 0 0 chr11 84673819 84673854 -66109699 + L2 LINE L2 3263 3297 -16 1647 203 44 34 chr11 84673936 84674320 -66109233 + MLT1B LTR MaLR 1 388 -2 2335 85 3 0 chr11 84674406 84674701 -66108852 + AluSp SINE Alu 1 296 -17 2228 102 0 13 chr11 84674844 84675158 -66108395 - AluSg SINE Alu 0 310 1 1907 117 72 0 chr11 84675166 84675458 -66108095 - AluSx SINE Alu 0 311 1 1302 197 33 11 chr11 84675499 84675614 -66107939 + AluJo SINE Alu 3 114 -198 207 0 0 0 chr11 84675614 84675637 -66107916 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1302 197 33 11 chr11 84675637 84675795 -66107758 + AluJo SINE Alu 114 282 -30 490 209 19 0 chr11 84675836 84675941 -66107612 + ERVL-C1 LTR ERVL 5650 5756 -8 1632 194 56 41 chr11 84675941 84676332 -66107221 + MLT2C1 LTR ERVL 1 397 0 2427 77 0 0 chr11 84676338 84676637 -66106916 - AluY SINE Alu -11 300 2 363 266 147 11 chr11 84676649 84676826 -66106727 - L1M4b LINE L1 -5195 1351 1151 1093 157 0 31 chr11 84676873 84677064 -66106489 - AluJo SINE Alu -24 288 104 4895 98 6 2 chr11 84677066 84677699 -66105854 + L1PA10 LINE L1 5517 6152 -16 207 0 0 0 chr11 84677820 84677843 -66105710 + (CA)n Simple_repeat Simple_repeat 2 24 0 2250 92 0 0 chr11 84677980 84678264 -66105289 + AluSx SINE Alu 12 295 -17 761 179 0 0 chr11 84678314 84678431 -66105122 - AluJo SINE Alu -185 117 1 404 172 20 10 chr11 84678448 84678547 -66105006 - L1M4b LINE L1 -5429 1117 1018 1563 191 97 38 chr11 84678656 84679027 -66104526 - MSTD LTR MaLR -3 393 1 233 358 17 17 chr11 84679149 84679269 -66104284 - L1M4b LINE L1 -5667 875 756 357 248 90 59 chr11 84679703 84679925 -66103628 - L1M4b LINE L1 -6306 236 8 1174 187 42 48 chr11 84680450 84680989 -66102564 - L1MB8 LINE L1 -11 6167 5413 807 325 33 11 chr11 84680996 84681267 -66102286 - L1M4b LINE L1 -6355 504 228 1410 230 21 45 chr11 84681328 84681475 -66102078 - MLT1A1 LTR MaLR 0 365 216 2467 123 28 17 chr11 84681475 84681832 -66101721 - THE1B LTR MaLR -3 361 1 1410 230 21 45 chr11 84681832 84682058 -66101495 - MLT1A1 LTR MaLR -149 216 1 1683 188 13 3 chr11 84682076 84682384 -66101169 - AluJo SINE Alu -1 311 1 329 161 25 37 chr11 84682384 84682465 -66101088 - L1M4b LINE L1 -6691 168 89 3311 190 60 54 chr11 84682571 84683140 -66100413 - L1M4c LINE L1 -4730 1916 1320 1978 136 10 23 chr11 84683140 84683450 -66100103 - AluSx SINE Alu -6 306 1 3311 190 60 54 chr11 84683450 84683954 -66099599 - L1M4c LINE L1 -5326 1320 821 763 165 0 8 chr11 84684059 84684180 -66099373 + AluSq/x SINE Alu 1 120 -193 2063 81 4 0 chr11 84684182 84684440 -66099113 + AluSp SINE Alu 36 294 -19 753 287 28 57 chr11 84684513 84684865 -66098688 - L1MEd LINE L1 -5398 721 380 600 244 142 6 chr11 84684912 84685088 -66098465 - L1MEd LINE L1 -5902 217 18 1263 220 97 25 chr11 84685476 84685896 -66097657 - MLT2B1 LTR ERVL 0 414 3 234 251 81 84 chr11 84686043 84686086 -66097467 - MIR SINE MIR -62 146 104 2217 98 3 7 chr11 84686086 84686382 -66097171 - AluSx SINE Alu -17 295 1 234 251 81 84 chr11 84686382 84686512 -66097041 - MIR SINE MIR -104 104 16 1030 197 5 32 chr11 84686542 84686760 -66096793 - AluJo SINE Alu -46 266 55 1530 166 4 40 chr11 84686760 84686932 -66096621 - AluJb SINE Alu -14 298 138 2172 115 3 10 chr11 84686932 84687245 -66096308 - AluSx SINE Alu -1 311 1 1530 166 4 40 chr11 84687245 84687350 -66096203 - AluJb SINE Alu -174 138 31 267 370 169 53 chr11 84687456 84687794 -66095759 + L2 LINE L2 2888 3264 -8 259 360 20 10 chr11 84688042 84688142 -66095411 - MIR SINE MIR -160 102 2 823 250 98 45 chr11 84688355 84688483 -66095070 - L1MC4 LINE L1 0 8042 7922 408 71 0 0 chr11 84688483 84688539 -66095014 + (CA)n Simple_repeat Simple_repeat 2 57 0 823 250 98 45 chr11 84688539 84688676 -66094877 - L1MC4 LINE L1 -120 7922 7753 2489 70 0 0 chr11 84688676 84688975 -66094578 - AluSg1 SINE Alu -10 299 1 823 250 98 45 chr11 84688975 84689044 -66094509 - L1MC4 LINE L1 -289 7753 7689 2343 159 68 0 chr11 84689215 84689610 -66093943 + MSTA LTR MaLR 1 422 -6 332 202 40 73 chr11 84689627 84689751 -66093802 - L1MC4 LINE L1 -7 8035 7916 788 181 84 42 chr11 84689810 84689976 -66093577 + AluJb SINE Alu 139 311 -1 304 225 29 65 chr11 84690028 84690166 -66093387 - L1MC4a LINE L1 -1555 6253 6121 798 115 14 3 chr11 84690188 84690324 -66093229 - MSTA LTR MaLR -220 144 1 1465 236 42 51 chr11 84690353 84690905 -66092648 - L1MC4a LINE L1 -1749 6059 5513 2378 124 134 8 chr11 84690951 84691331 -66092222 - MSTA LTR MaLR 0 428 1 305 61 0 61 chr11 84691331 84691380 -66092173 - MSTA-int LTR MaLR 0 1580 1535 23 0 0 0 chr11 84691538 84691561 -66091992 + AT_rich Low_complexity Low_complexity 1 23 0 8681 155 8 48 chr11 84691809 84691820 -66091733 - MSTA-int LTR MaLR -55 1525 1515 2416 73 0 7 chr11 84691820 84692121 -66091432 - AluY SINE Alu -12 299 1 8681 155 8 48 chr11 84692121 84693142 -66090411 - MSTA-int LTR MaLR -65 1515 454 2372 82 0 32 chr11 84693142 84693458 -66090095 - AluY SINE Alu -5 306 1 8681 155 8 48 chr11 84693458 84693648 -66089905 - MSTA-int LTR MaLR -1126 454 258 1628 165 3 60 chr11 84693648 84693963 -66089590 + AluSx SINE Alu 1 297 -15 8681 155 8 48 chr11 84693963 84694325 -66089228 - MSTA-int LTR MaLR -1322 258 3 2199 125 161 5 chr11 84694331 84694698 -66088855 - MSTA LTR MaLR -4 424 1 183 312 103 92 chr11 84694947 84695229 -66088324 - L2 LINE L2 -81 3191 2907 199 203 51 34 chr11 84695336 84695395 -66088158 + MIR3 SINE MIR 148 207 -1 988 91 0 124 chr11 84695410 84695530 -66088023 - L1PA8 LINE L1 0 6172 6081 2113 102 3 7 chr11 84695530 84695824 -66087729 - AluSg SINE Alu -15 295 3 988 91 0 124 chr11 84695824 84695889 -66087664 - L1PA8 LINE L1 -91 6081 6010 462 232 5 100 chr11 84695901 84696091 -66087462 - AluJo SINE Alu -52 260 89 234 0 0 0 chr11 84696152 84696178 -66087375 + (T)n Simple_repeat Simple_repeat 1 26 0 2360 47 98 0 chr11 84696178 84696475 -66087078 - LTR17 LTR ERV1 -454 326 1 2491 51 0 0 chr11 84696475 84696767 -66086786 - HERV17 LTR ERV1 0 8626 8335 286 77 0 0 chr11 84696757 84696796 -66086757 - HERV17 LTR ERV1 -1078 7548 7510 * 34084 43 13 1 chr11 84696789 84700804 -66082749 - HERV17 LTR ERV1 -2607 6019 1953 3727 48 67 10 chr11 84700834 84701329 -66082224 - LTR17 LTR ERV1 0 780 258 1461 148 0 0 chr11 84701329 84701539 -66082014 - AluSx SINE Alu -102 210 1 784 167 8 0 chr11 84701540 84701660 -66081893 - AluJo/FLAM SINE Alu -186 126 6 2320 92 0 0 chr11 84701784 84702077 -66081476 - AluSq SINE Alu -20 293 1 1328 96 25 15 chr11 84702120 84702317 -66081236 + AluSg/x SINE Alu 109 307 -5 1811 174 7 0 chr11 84702550 84702844 -66080709 + AluJo SINE Alu 2 297 -15 432 243 97 129 chr11 84703063 84703519 -66080034 - MLT1J1 LTR MaLR -3 443 3 929 192 22 0 chr11 84703579 84703761 -66079792 + Charlie4 DNA MER1_type 1760 1945 -16 247 100 0 80 chr11 84704555 84704605 -66078948 + Alu SINE Alu 256 301 -1 2410 106 0 0 chr11 84704682 84704993 -66078560 - AluSq SINE Alu -2 311 1 270 329 109 59 chr11 84705112 84705434 -66078119 + L2 LINE L2 2934 3271 -1 2216 101 0 7 chr11 84705911 84706207 -66077346 - AluSc SINE Alu -15 294 1 572 200 140 0 chr11 84706442 84706592 -66076961 - MER104 DNA Tc2 -9 171 1 758 254 84 14 chr11 84706630 84706843 -66076710 - MIR SINE MIR -17 245 18 221 296 0 0 chr11 84706987 84707041 -66076512 - L2 LINE L2 -552 2762 2709 260 300 118 9 chr11 84708018 84708128 -66075425 + MIR SINE MIR 115 236 -26 520 318 81 10 chr11 84708277 84708475 -66075078 + MIR SINE MIR 3 214 -48 937 107 0 0 chr11 84708758 84708879 -66074674 - AluSq/x SINE Alu -191 121 1 532 246 30 8 chr11 84708879 84709013 -66074540 - MIR SINE MIR -56 152 16 1281 172 27 63 chr11 84710093 84710425 -66073128 - MER33 DNA MER1_type -1 323 4 6646 138 23 21 chr11 84710537 84710984 -66072569 + Ricksha_b DNA DNA 1 446 -2813 2019 134 3 13 chr11 84710984 84711283 -66072270 + AluSx SINE Alu 1 296 -16 6646 138 23 21 chr11 84711283 84711999 -66071554 + Ricksha_b DNA DNA 446 1646 -13 315 305 39 8 chr11 84712019 84712147 -66071406 - L1ME4a LINE L1 -244 5877 5746 501 209 2 2 chr11 84712350 84712453 -66071100 + L1ME1 LINE L1 6004 6106 -56 219 36 0 0 chr11 84712886 84712914 -66070639 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1517 155 72 8 chr11 84712921 84713185 -66070368 - AluJo SINE Alu -31 281 1 279 312 32 0 chr11 84713737 84713830 -66069723 + L1MC/D LINE L1 5482 5577 -665 785 62 10 0 chr11 84714046 84714143 -66069410 - L1PA7 LINE L1 -4 6150 6053 1624 171 0 10 chr11 84714143 84714442 -66069111 - AluSg SINE Alu -14 296 1 261 205 98 45 chr11 84714539 84714651 -66068902 + L1ME4a LINE L1 6003 6120 -1 313 160 40 27 chr11 84714672 84714747 -66068806 + MLT1L LTR MaLR 1 76 -539 198 0 0 0 chr11 84714941 84714963 -66068590 + (T)n Simple_repeat Simple_repeat 1 22 0 236 250 144 10 chr11 84714965 84715069 -66068484 + MIR3 SINE MIR 89 206 -2 250 236 97 0 chr11 84715119 84715191 -66068362 - MIR3 SINE MIR -4 204 126 1729 170 14 14 chr11 84715339 84715633 -66067920 + AluJo SINE Alu 1 294 -18 364 318 98 0 chr11 84715894 84716026 -66067527 + L2 LINE L2 2552 2696 -618 500 210 127 45 chr11 84716040 84716197 -66067356 - L1MC5 LINE L1 -35 7926 7757 310 302 245 12 chr11 84716203 84716494 -66067059 + L2 LINE L2 2688 3053 -219 247 216 203 0 chr11 84716534 84716608 -66066945 + L1MC4 LINE L1 7942 8030 -12 2144 87 25 0 chr11 84717332 84717632 -66065921 - AluY SINE Alu 0 307 1 341 158 0 0 chr11 84718529 84718589 -66064964 + Alu SINE Alu 1 45 -258 1197 91 0 7 chr11 84718589 84718743 -66064810 + AluSg/x SINE Alu 137 289 -23 943 192 19 34 chr11 84718767 84718975 -66064578 - MER3 DNA MER1_type -4 205 1 1298 130 83 89 chr11 84719178 84719351 -66064202 + MER33 DNA MER1_type 3 175 -2410 2395 77 3 3 chr11 84719351 84719650 -66063903 + AluSg SINE Alu 1 299 -11 1298 130 83 89 chr11 84719650 84719800 -66063753 + MER33 DNA MER1_type 175 324 0 245 372 62 8 chr11 84720786 84720915 -66062638 + L2 LINE L2 2478 2613 -701 318 225 56 81 chr11 84721548 84721708 -66061845 - MER103 DNA DNA -8 158 3 2163 130 0 0 chr11 84721764 84722064 -66061489 + AluSq SINE Alu 1 300 -13 677 307 51 24 chr11 84722123 84722419 -66061134 + L3 LINE CR1 1165 1468 -109 1020 212 28 0 chr11 84722670 84722882 -66060671 - L1MC1 LINE L1 0 6333 6116 231 254 0 0 chr11 84723435 84723498 -66060055 - MIR SINE MIR -32 230 168 1276 147 4 4 chr11 84723610 84723842 -66059711 + MER1A DNA MER1_type 1 314 -215 720 118 0 76 chr11 84723846 84723965 -66059588 + MER1A DNA MER1_type 420 529 0 449 306 34 20 chr11 84723971 84724118 -66059435 + L2 LINE L2 2903 3051 -221 466 250 176 40 chr11 84724181 84724357 -66059196 - MIR SINE MIR -16 246 47 1758 157 3 23 chr11 84724454 84724760 -66058793 - AluSx SINE Alu -12 300 1 315 324 9 9 chr11 84725132 84725243 -66058310 - MIR3 SINE MIR -87 121 11 1782 165 24 14 chr11 84725341 84725638 -66057915 + AluJb SINE Alu 1 300 -12 394 232 36 101 chr11 84725757 84725895 -66057658 + L2 LINE L2 3167 3295 -18 244 284 25 25 chr11 84725932 84726013 -66057540 - MIR SINE MIR -68 194 114 233 228 206 0 chr11 84726272 84726352 -66057201 + MIR SINE MIR 60 154 -85 1307 140 153 8 chr11 84726582 84726861 -66056692 - AluJb SINE Alu 0 326 14 2324 89 0 0 chr11 84729172 84729463 -66054090 - AluY SINE Alu -15 296 6 887 89 15 59 chr11 84729664 84729799 -66053754 + FLAM_C SINE Alu 1 129 -4 212 197 213 0 chr11 84729853 84729914 -66053639 - MIR SINE MIR -43 219 146 321 151 81 47 chr11 84730014 84730100 -66053453 + MIR SINE MIR 103 191 -71 575 242 169 11 chr11 84730251 84730429 -66053124 - MIR SINE MIR -32 230 25 194 304 36 0 chr11 84730708 84730764 -66052789 - MIR3 SINE MIR -40 168 111 322 367 80 13 chr11 84730837 84731063 -66052490 + L3 LINE CR1 1326 1566 -11 650 296 73 35 chr11 84731898 84732212 -66051341 - MER102a DNA MER1_type -3 327 2 184 269 258 21 chr11 84732227 84732320 -66051233 + L2 LINE L2 3127 3241 -31 2646 27 0 0 chr11 84732493 84732789 -66050764 - AluYa5 SINE Alu -15 296 1 488 241 36 138 chr11 84732993 84733246 -66050307 + MIR SINE MIR 15 241 -21 1140 179 9 45 chr11 84734507 84734731 -66048822 - AluSg/x SINE Alu -12 298 83 234 200 0 83 chr11 84734815 84734875 -66048678 - MER58A DNA MER1_type -1 223 169 567 158 126 0 chr11 84734877 84734972 -66048581 - AluJb SINE Alu -16 296 190 674 224 18 42 chr11 84735013 84735178 -66048375 - MER58A DNA MER1_type -40 184 24 201 313 165 0 chr11 84735261 84735376 -66048177 - L2 LINE L2 -4 3309 3176 181 213 0 120 chr11 84735724 84735799 -66047754 - L2 LINE L2 -826 2488 2423 1825 150 0 17 chr11 84735848 84736141 -66047412 + AluJb SINE Alu 1 288 -24 2202 103 17 13 chr11 84736560 84736861 -66046692 + AluSx SINE Alu 1 302 -10 333 0 0 0 chr11 84737776 84737813 -66045740 + (CA)n Simple_repeat Simple_repeat 2 38 0 1991 137 10 0 chr11 84737874 84738166 -66045387 + AluSx SINE Alu 1 295 -17 1407 148 0 23 chr11 84738179 84738396 -66045157 + AluJo SINE Alu 9 220 -92 1979 95 69 0 chr11 84738421 84738683 -66044870 - AluSx SINE Alu -32 280 1 264 30 0 0 chr11 84738713 84738746 -66044807 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1708 138 4 18 chr11 84739351 84739627 -66043926 - AluJb SINE Alu -7 305 34 263 238 16 16 chr11 84739632 84739695 -66043858 + L2 LINE L2 3251 3313 0 914 126 7 30 chr11 84740228 84740363 -66043190 - FLAM_C SINE Alu -1 132 1 231 61 0 0 chr11 84740365 84740398 -66043155 + (T)n Simple_repeat Simple_repeat 1 33 0 5291 68 15 2 chr11 84740527 84741100 -66042453 - L1PA7 LINE L1 -276 5878 5314 216 0 0 0 chr11 84741100 84741124 -66042429 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5291 68 15 2 chr11 84741124 84741751 -66041802 - L1PA7 LINE L1 -840 5314 4667 737 133 17 0 chr11 84741751 84741871 -66041682 - L1MA1 LINE L1 -7 6295 6174 25 0 0 0 chr11 84742518 84742543 -66041010 + AT_rich Low_complexity Low_complexity 1 25 0 879 92 0 0 chr11 84742545 84742654 -66040899 - FLAM_C SINE Alu -18 125 17 193 330 21 32 chr11 84743250 84743344 -66040209 + L2 LINE L2 3179 3271 -1 543 273 35 7 chr11 84743462 84743639 -66039914 - MIR SINE MIR -11 251 71 561 243 9 0 chr11 84744190 84744301 -66039252 - FLAM_A SINE Alu -30 112 1 1178 123 6 22 chr11 84744317 84744496 -66039057 - AluJo/FRAM SINE Alu -3 309 134 1615 181 55 7 chr11 84744496 84744788 -66038765 - AluJb SINE Alu -6 306 1 373 155 0 0 chr11 84745343 84745401 -66038152 - Alu SINE Alu 0 302 245 244 289 47 115 chr11 84746345 84746514 -66037039 + L2 LINE L2 3035 3183 -89 1981 127 19 29 chr11 84746514 84746828 -66036725 - AluSx SINE Alu -1 311 1 244 289 47 115 chr11 84746828 84746911 -66036642 + L2 LINE L2 3183 3270 -2 938 298 89 20 chr11 84747218 84747752 -66035801 - L2 LINE L2 -43 3270 2700 1991 142 37 23 chr11 84747836 84748189 -66035364 + Tigger1 DNA MER2_type 24 381 -2037 2175 118 0 22 chr11 84748930 84749244 -66034309 - AluSx SINE Alu -5 307 1 2225 118 0 0 chr11 84749292 84749589 -66033964 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr11 84749597 84749618 -66033935 + AT_rich Low_complexity Low_complexity 1 21 0 405 234 94 0 chr11 84749666 84749794 -66033759 - MIR SINE MIR -1 261 122 312 288 96 16 chr11 84749853 84749978 -66033575 - MLT1L LTR MaLR -2 613 479 2261 103 3 3 chr11 84750019 84750321 -66033232 - AluY SINE Alu -9 302 1 273 234 153 51 chr11 84750331 84750468 -66033085 - HAL1b LINE L1 0 1348 1198 463 169 0 0 chr11 84750717 84750788 -66032765 - AluJ/FLAM SINE Alu -240 72 2 23 0 0 0 chr11 84750789 84750812 -66032741 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr11 84750935 84750963 -66032590 + AT_rich Low_complexity Low_complexity 1 28 0 414 264 9 9 chr11 84751030 84751136 -66032417 - L2 LINE L2 -4 3309 3204 189 171 73 0 chr11 84751210 84751251 -66032302 - L2 LINE L2 -253 3060 3017 486 312 19 0 chr11 84751256 84751410 -66032143 - MIR SINE MIR -58 204 48 404 294 147 6 chr11 84751458 84751628 -66031925 - MIR SINE MIR -49 213 20 351 267 52 9 chr11 84752078 84752194 -66031359 - L2 LINE L2 -15 3257 3137 334 273 87 55 chr11 84752240 84752348 -66031205 + MIR3 SINE MIR 15 133 -75 2166 117 0 10 chr11 84752348 84752646 -66030907 + AluSx SINE Alu 1 295 -17 334 273 87 55 chr11 84752646 84752720 -66030833 + MIR3 SINE MIR 133 203 -5 487 292 83 19 chr11 84752814 84753030 -66030523 + MIR SINE MIR 20 249 -13 244 324 70 94 chr11 84753213 84753469 -66030084 - L2 LINE L2 -21 3251 3002 2364 76 0 17 chr11 84754436 84754738 -66028815 + AluSx SINE Alu 1 297 -15 577 293 73 35 chr11 84755019 84755333 -66028220 + MER102a DNA MER1_type 2 327 -3 220 234 271 9 chr11 84755957 84756064 -66027489 + MIR3 SINE MIR 44 178 -30 266 346 93 10 chr11 84756163 84756368 -66027185 - L3 LINE CR1 -11 1566 1345 540 247 143 11 chr11 84756797 84756979 -66026574 + MIR SINE MIR 25 230 -32 295 151 81 47 chr11 84757130 84757216 -66026337 - MIR SINE MIR -71 191 103 193 197 213 0 chr11 84757316 84757377 -66026176 + MIR SINE MIR 146 219 -43 829 89 15 59 chr11 84757431 84757566 -66025987 - FLAM_C SINE Alu -4 129 1 2347 89 0 0 chr11 84757767 84758059 -66025494 + AluY SINE Alu 6 297 -14 1321 140 153 8 chr11 84760371 84760650 -66022903 + AluJb SINE Alu 14 326 0 215 197 229 0 chr11 84760880 84760941 -66022612 - MIR SINE MIR -108 154 80 223 284 25 25 chr11 84761219 84761300 -66022253 + MIR SINE MIR 114 194 -68 356 254 29 94 chr11 84761337 84761475 -66022078 - L2 LINE L2 -18 3295 3167 1817 159 22 29 chr11 84761577 84761891 -66021662 - AluJb SINE Alu 0 312 1 280 324 9 9 chr11 84761989 84762100 -66021453 + MIR3 SINE MIR 11 121 -87 2068 108 7 17 chr11 84762472 84762787 -66020766 + AluSx SINE Alu 1 312 0 313 272 67 2 chr11 84763099 84763255 -66020298 - MIR SINE MIR -64 144 20 1905 158 3 19 chr11 84764435 84764746 -66018807 - AluJo SINE Alu -6 306 1 2274 113 10 0 chr11 84764754 84765063 -66018490 - AluSx SINE Alu 0 312 1 2245 106 0 3 chr11 84765223 84765530 -66018023 + AluSx SINE Alu 1 306 0 1652 186 7 17 chr11 84765608 84765909 -66017644 + AluJo SINE Alu 4 301 -11 3162 8 0 0 chr11 84766472 84766843 -66016710 + L1PA4 LINE L1 2826 3196 -2950 14301 29 11 0 chr11 84766847 84769254 -66014299 + L1PA4 LINE L1 3728 6163 0 199 235 0 78 chr11 84769345 84769396 -66014157 + L2 LINE L2 3232 3278 -35 453 322 11 28 chr11 84769645 84769825 -66013728 - MER5B DNA MER1_type 0 178 2 220 345 55 9 chr11 84770285 84770395 -66013158 + L2 LINE L2 3108 3222 -50 204 182 0 0 chr11 84770421 84770465 -66013088 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 229 299 122 9 chr11 84770773 84770880 -66012673 - MIR SINE MIR -56 152 34 230 282 73 0 chr11 84771717 84771827 -66011726 - MIR SINE MIR -14 248 131 383 273 30 15 chr11 84771829 84771961 -66011592 - L2 LINE L2 0 3313 3180 210 339 0 0 chr11 84772057 84772113 -66011440 - L2 LINE L2 -253 3060 3005 2253 89 0 13 chr11 84772266 84772569 -66010984 - AluSg SINE Alu -11 299 1 1681 156 58 11 chr11 84773010 84773285 -66010268 + AluJo SINE Alu 1 288 -24 2188 99 0 0 chr11 84773305 84773621 -66009932 + AluSx SINE Alu 9 324 0 194 234 299 0 chr11 84775044 84775151 -66008402 + L2 LINE L2 3174 3312 -1 225 0 0 0 chr11 84775222 84775247 -66008306 + (A)n Simple_repeat Simple_repeat 1 25 0 1190 121 6 0 chr11 84775365 84775531 -66008022 - AluSc SINE Alu -142 167 1 881 248 121 37 chr11 84775531 84775886 -66007667 - MLT1L LTR MaLR -215 400 16 1823 107 0 4 chr11 84776313 84776555 -66006998 - AluSg/x SINE Alu -4 308 68 2032 109 0 0 chr11 84776555 84776819 -66006734 - AluSq SINE Alu -48 265 1 667 200 0 8 chr11 84777293 84777418 -66006135 - FLAM_A SINE Alu -9 124 1 22 43 0 21 chr11 84777659 84777687 -66005866 + AT_rich Low_complexity Low_complexity 1 29 -17 2574 71 0 0 chr11 84777687 84777997 -66005556 - AluY SINE Alu -1 310 1 22 43 0 21 chr11 84777997 84778015 -66005538 + AT_rich Low_complexity Low_complexity 29 46 0 206 282 56 0 chr11 84778126 84778197 -66005356 - MIR SINE MIR 0 262 188 1032 156 0 0 chr11 84778274 84778454 -66005099 + (TA)n Simple_repeat Simple_repeat 1 180 0 2288 112 0 0 chr11 84778499 84778794 -66004759 + AluSx SINE Alu 1 295 -17 1821 134 20 13 chr11 84779022 84779328 -66004225 + AluSx SINE Alu 1 308 -4 1650 111 42 85 chr11 84780127 84780434 -66003119 + MER7A DNA MER2_type 54 345 -1 224 128 0 43 chr11 84780610 84780657 -66002896 + (TTTCC)n Simple_repeat Simple_repeat 1 45 0 2000 107 24 34 chr11 84780657 84780955 -66002598 - AluSx SINE Alu -15 297 3 200 321 12 12 chr11 84780959 84781040 -66002513 + L2 LINE L2 3190 3270 -2 949 296 89 20 chr11 84781345 84781879 -66001674 - L2 LINE L2 -43 3270 2700 1991 142 37 23 chr11 84781963 84782316 -66001237 + Tigger1 DNA MER2_type 24 381 -2037 2163 121 0 19 chr11 84783057 84783370 -66000183 - AluSx SINE Alu -5 307 1 2247 114 0 0 chr11 84783418 84783716 -65999837 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr11 84783724 84783745 -65999808 + AT_rich Low_complexity Low_complexity 1 21 0 405 234 94 0 chr11 84783793 84783921 -65999632 - MIR SINE MIR -1 261 122 312 288 96 16 chr11 84783980 84784105 -65999448 - MLT1L LTR MaLR -2 613 479 2284 104 3 0 chr11 84784145 84784444 -65999109 - AluSc SINE Alu -9 300 1 907 245 121 37 chr11 84784444 84784799 -65998754 - MLT1L LTR MaLR -215 400 16 1830 107 0 4 chr11 84785226 84785469 -65998084 - AluSg/x SINE Alu -3 307 66 2032 109 0 0 chr11 84785469 84785733 -65997820 - AluSq SINE Alu -48 265 1 667 200 0 8 chr11 84786207 84786332 -65997221 - FLAM_A SINE Alu -9 124 1 22 43 0 21 chr11 84786573 84786601 -65996952 + AT_rich Low_complexity Low_complexity 1 29 -17 2574 71 0 0 chr11 84786601 84786911 -65996642 - AluY SINE Alu -1 310 1 22 43 0 21 chr11 84786911 84786929 -65996624 + AT_rich Low_complexity Low_complexity 29 46 0 206 282 56 0 chr11 84787040 84787111 -65996442 - MIR SINE MIR 0 262 188 359 278 0 0 chr11 84787193 84787283 -65996270 + L1MC4 LINE L1 6614 6703 -1339 326 311 0 0 chr11 84787205 84787295 -65996258 - L1MC4 LINE L1 -1339 6703 6614 * 270 81 0 0 chr11 84787296 84787333 -65996220 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 2288 112 0 0 chr11 84787373 84787668 -65995885 + AluSx SINE Alu 1 295 -17 2192 91 21 0 chr11 84787896 84788183 -65995370 + AluSp SINE Alu 1 293 -20 333 190 300 0 chr11 84788936 84789036 -65994517 - MLT1J LTR MaLR -29 482 353 2524 79 0 0 chr11 84789041 84789346 -65994207 - AluY SINE Alu -6 305 1 206 311 33 0 chr11 84789661 84789722 -65993831 - L3 LINE CR1 -21 1556 1494 1270 209 0 0 chr11 84790312 84790532 -65993021 - MER58A DNA MER1_type -3 221 2 225 139 28 0 chr11 84791522 84791558 -65991995 + MLT1J LTR MaLR 99 135 -376 448 298 40 7 chr11 84791752 84791903 -65991650 + LTR67 LTR ERVL 394 549 -8 1650 111 42 85 chr11 84791935 84792242 -65991311 - MER7A DNA MER2_type -1 345 54 2211 132 13 0 chr11 84793041 84793345 -65990208 - AluSx SINE Alu -4 308 1 964 245 15 44 chr11 84793535 84793808 -65989745 + MLT1J LTR MaLR 3 267 -244 1408 121 0 24 chr11 84793885 84794092 -65989461 + AluJb SINE Alu 1 202 -110 1080 260 14 4 chr11 84794212 84794489 -65989064 - L1MEc LINE L1 -6082 314 35 1033 175 0 16 chr11 84794562 84794790 -65988763 - AluJb SINE Alu 0 312 127 2061 149 3 0 chr11 84794834 84795130 -65988423 + AluJb SINE Alu 1 297 -15 374 228 8 73 chr11 84795298 84795421 -65988132 + MLT1J LTR MaLR 104 218 -293 259 281 104 43 chr11 84795661 84795825 -65987728 - MLT1J LTR MaLR -260 289 116 544 259 72 36 chr11 84796501 84796667 -65986886 + MER5B DNA MER1_type 7 178 0 332 262 134 47 chr11 84796668 84796800 -65986753 + L1MC4 LINE L1 7620 7768 -274 2268 114 3 0 chr11 84796800 84797097 -65986456 - AluSx SINE Alu -14 298 1 332 262 134 47 chr11 84797097 84797113 -65986440 + L1MC4 LINE L1 7768 7781 -261 2108 145 6 3 chr11 84797131 84797442 -65986111 + AluJo SINE Alu 1 312 0 219 69 0 0 chr11 84797442 84797471 -65986082 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 451 260 12 59 chr11 84797500 84797669 -65985884 + L1MC4 LINE L1 7816 7976 -66 200 184 41 0 chr11 84797906 84797955 -65985598 + CT-rich Low_complexity Low_complexity 2 52 0 255 242 26 15 chr11 84798310 84798514 -65985039 + CT-rich Low_complexity Low_complexity 1 206 0 2303 115 3 0 chr11 84798675 84798987 -65984566 - AluSq SINE Alu 0 313 1 5927 56 49 13 chr11 84799337 84800088 -65983465 + LTR17 LTR ERV1 1 778 -2 667 182 42 35 chr11 84800091 84800234 -65983319 + LTR8 LTR ERV1 3 146 -545 2093 144 6 10 chr11 84800243 84800556 -65982997 + AluSx SINE Alu 1 312 0 372 192 13 13 chr11 84800556 84800634 -65982919 + LTR8A LTR ERV1 568 645 -82 1486 208 45 47 chr11 84800639 84801043 -65982510 - LTR9 LTR ERV1 0 612 210 517 158 21 21 chr11 84801070 84801165 -65982388 - AluJ/FLAM SINE Alu -216 96 2 373 320 66 13 chr11 84801166 84801394 -65982159 + L1MC4a LINE L1 5586 5825 -1983 241 158 0 0 chr11 84801422 84801460 -65982093 - Alu SINE Alu -261 38 1 524 299 35 62 chr11 84801497 84801785 -65981768 - L2 LINE L2 -78 3194 2915 524 167 14 109 chr11 84802490 84802628 -65980925 - LTR8A LTR ERV1 0 727 603 3114 145 2 6 chr11 84802629 84803132 -65980421 - MER50 LTR ERV1 -23 711 211 1651 153 12 8 chr11 84803132 84803387 -65980166 - AluJb SINE Alu -23 289 34 2467 91 8 14 chr11 84803387 84803748 -65979805 - LTR8A LTR ERV1 -368 359 1 1307 153 10 5 chr11 84805050 84805253 -65978300 - AluJb SINE Alu -23 289 86 601 179 49 24 chr11 84805259 84805382 -65978171 - FLAM_C SINE Alu -16 127 2 21 57 0 0 chr11 84805385 84805420 -65978133 + AT_rich Low_complexity Low_complexity 1 35 0 700 168 0 0 chr11 84805430 84805537 -65978016 + AluSq/x SINE Alu 2 108 -205 1430 77 0 0 chr11 84805542 84805712 -65977841 - AluY SINE Alu -7 304 135 786 155 43 91 chr11 84806003 84806190 -65977363 - MER5B DNA MER1_type 0 178 1 937 119 0 60 chr11 84806343 84806494 -65977059 - FLAM_C SINE Alu -1 142 1 1988 114 3 31 chr11 84807013 84807214 -65976339 - AluSx SINE Alu 0 308 117 2413 103 73 6 chr11 84807214 84807555 -65975998 + THE1B LTR MaLR 1 364 0 1988 114 3 31 chr11 84807555 84807666 -65975887 - AluSx SINE Alu -191 117 4 819 199 147 5 chr11 84807882 84808093 -65975460 - LTR16A1 LTR ERVL -20 437 197 864 185 29 12 chr11 84808123 84808296 -65975257 - MER5A DNA MER1_type -7 182 7 377 304 43 31 chr11 84809537 84809642 -65973911 + L3 LINE CR1 1212 1321 -256 1792 135 11 0 chr11 84809642 84809902 -65973651 - AluSx SINE Alu -16 296 34 377 304 43 31 chr11 84809902 84809957 -65973596 + L3 LINE CR1 1321 1374 -203 2229 115 0 0 chr11 84810005 84810320 -65973233 + AluSx SINE Alu 1 315 0 378 294 0 9 chr11 84810338 84810447 -65973106 + MIR SINE MIR 41 148 -114 874 120 0 0 chr11 84810449 84810566 -65972987 + FLAM_C SINE Alu 1 117 -16 2251 135 0 0 chr11 84810615 84810927 -65972626 + AluSx SINE Alu 1 312 0 242 303 0 15 chr11 84811066 84811132 -65972421 - L2 LINE L2 -5 3308 3244 2179 111 37 0 chr11 84811205 84811503 -65972050 - AluSx SINE Alu -3 309 1 1467 167 31 37 chr11 84811512 84811806 -65971747 - AluJo SINE Alu -19 293 2 199 283 17 17 chr11 84811971 84812031 -65971522 - L2 LINE L2 -6 3266 3207 220 343 14 14 chr11 84812035 84812105 -65971448 - MIR SINE MIR -181 81 12 324 319 137 49 chr11 84812155 84812381 -65971172 - L2 LINE L2 0 3272 3027 222 252 252 26 chr11 84812824 84812939 -65970614 - MIR SINE MIR -61 201 61 364 289 23 31 chr11 84813022 84813150 -65970403 + MIR3 SINE MIR 68 194 -14 1655 153 28 8 chr11 84813211 84813466 -65970087 + AluSx SINE Alu 1 260 -52 771 146 16 0 chr11 84813567 84813690 -65969863 - AluSq/x SINE Alu -188 125 1 256 321 52 62 chr11 84813691 84813884 -65969669 + L2 LINE L2 2688 2878 -436 789 138 0 49 chr11 84814100 84814223 -65969330 + FLAM_C SINE Alu 2 118 -25 198 0 0 0 chr11 84814227 84814249 -65969304 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 203 258 0 45 chr11 84815038 84815104 -65968449 + G-rich Low_complexity Low_complexity 2 64 0 1038 152 12 0 chr11 84815476 84815640 -65967913 - AluJb SINE Alu 0 312 147 229 190 86 0 chr11 84815667 84815725 -65967828 + LTR24 LTR ERV1 405 467 0 191 294 0 0 chr11 84815727 84815778 -65967775 + MIR SINE MIR 99 149 -59 211 245 41 0 chr11 84815856 84815905 -65967648 - MIR SINE MIR -56 152 102 377 273 6 31 chr11 84815906 84816067 -65967486 - MER93b LTR ERV1 0 373 217 2142 128 14 0 chr11 84816076 84816372 -65967181 + AluSx SINE Alu 1 300 -12 312 265 0 0 chr11 84816379 84816447 -65967106 - L1MC4 LINE L1 -1339 6703 6636 299 338 12 19 chr11 84816450 84816595 -65966958 - MER93a LTR ERV1 -170 232 89 305 81 2 133 chr11 84816595 84816637 -65966916 - MLT2A1 LTR ERVL -2 442 421 2239 121 7 3 chr11 84816637 84816944 -65966609 + AluSq SINE Alu 1 308 -5 305 81 2 133 chr11 84816944 84816973 -65966580 - MLT2A1 LTR ERVL -23 421 390 262 284 23 0 chr11 84817021 84817109 -65966444 + L1MC4 LINE L1 6614 6703 -1339 3118 67 0 2 chr11 84817115 84817520 -65966033 - MLT2A1 LTR ERVL -40 404 1 866 224 10 10 chr11 84817766 84817958 -65965595 + L1MC3 LINE L1 7107 7298 -487 1000 143 11 23 chr11 84817962 84818128 -65965425 - MER4B LTR ERV1 0 610 444 2009 139 0 21 chr11 84818128 84818446 -65965107 + AluSx SINE Alu 1 312 0 1706 174 7 27 chr11 84818454 84818748 -65964805 + AluJb SINE Alu 1 288 -24 1055 296 80 0 chr11 84819321 84819645 -65963908 - ERVL LTR ERVL -1066 4698 4349 1424 255 114 31 chr11 84819645 84820135 -65963418 + MLT1H LTR MaLR 1 531 -18 531 319 108 4 chr11 84820214 84820465 -65963088 - LTR40a LTR ERVL -118 401 125 1165 277 26 23 chr11 84820639 84820986 -65962567 - ERVL LTR ERVL -1411 4353 4006 2149 113 3 3 chr11 84821500 84821813 -65961740 - AluSq SINE Alu 0 313 1 1775 158 43 4 chr11 84821908 84822074 -65961479 - AluJb SINE Alu -17 295 112 227 31 31 0 chr11 84822074 84822106 -65961447 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1775 158 43 4 chr11 84822106 84822218 -65961335 - AluJb SINE Alu -200 112 6 2182 118 13 0 chr11 84822221 84822525 -65961028 - AluSq SINE Alu -5 308 1 1735 141 3 69 chr11 84822809 84823146 -65960407 - AluSx SINE Alu 0 317 1 267 292 21 17 chr11 84823325 84823438 -65960115 - MLT1H LTR MaLR -227 223 120 21 0 0 0 chr11 84823683 84823704 -65959849 + AT_rich Low_complexity Low_complexity 1 21 0 1943 172 0 6 chr11 84824431 84824745 -65958808 + AluJb SINE Alu 1 312 0 2373 96 0 0 chr11 84824820 84825112 -65958441 - AluSg SINE Alu -17 293 2 855 194 119 61 chr11 84825384 84825586 -65957967 - MLT1D LTR MaLR 0 505 316 1714 166 33 0 chr11 84825586 84825887 -65957666 - AluJo SINE Alu -1 311 1 855 194 119 61 chr11 84825887 84826084 -65957469 - MLT1D LTR MaLR -189 316 1 2192 83 3 47 chr11 84826192 84826493 -65957060 + AluSx SINE Alu 8 295 -17 2597 149 11 65 chr11 84826571 84827047 -65956506 + Tigger1 DNA MER2_type 1 448 -1970 1622 173 55 3 chr11 84827047 84827336 -65956217 + AluJo SINE Alu 1 304 -8 2597 149 11 65 chr11 84827336 84827383 -65956170 + Tigger1 DNA MER2_type 448 496 -1922 2029 152 3 10 chr11 84827383 84827693 -65955860 + AluJo SINE Alu 1 308 -4 1729 123 8 0 chr11 84827693 84827954 -65955599 + Tigger1 DNA MER2_type 2034 2296 -122 1342 194 28 12 chr11 84827954 84828207 -65955346 + AluJo SINE Alu 1 257 -55 793 187 0 0 chr11 84828211 84828345 -65955208 + Tigger1 DNA MER2_type 2285 2418 0 207 311 0 0 chr11 84828348 84828409 -65955144 - MIR SINE MIR -2 260 200 1821 131 25 18 chr11 84828414 84828732 -65954821 - AluSq SINE Alu 0 320 1 1646 172 13 48 chr11 84828732 84829046 -65954507 - AluJo SINE Alu -9 303 1 1294 241 141 78 chr11 84829047 84829360 -65954193 - L1MEc LINE L1 -5377 1019 727 2305 121 0 3 chr11 84829360 84829673 -65953880 - AluSx SINE Alu 0 312 1 1294 241 141 78 chr11 84829673 84830076 -65953477 - L1MEc LINE L1 -5669 727 258 2262 120 0 0 chr11 84830207 84830499 -65953054 - AluSc SINE Alu -17 292 1 21 0 0 0 chr11 84830516 84830537 -65953016 + AT_rich Low_complexity Low_complexity 1 21 0 1054 119 0 34 chr11 84830539 84830716 -65952837 - MER4B LTR ERV1 -251 359 189 1341 102 10 10 chr11 84830747 84830953 -65952600 - MER4B LTR ERV1 -404 206 1 780 144 70 8 chr11 84830959 84831161 -65952392 + L1MD3 LINE L1 7290 7478 -517 2291 114 0 0 chr11 84831161 84831459 -65952094 + AluSg SINE Alu 1 298 -12 780 144 70 8 chr11 84831459 84831487 -65952066 + L1MD3 LINE L1 7478 7735 -260 1227 216 0 0 chr11 84831497 84831710 -65951843 + AluJb SINE Alu 1 213 -99 3078 179 50 30 chr11 84831710 84831755 -65951798 - MER61-int LTR ERV1 -215 6765 6722 2132 108 49 0 chr11 84831755 84832041 -65951512 + AluSx SINE Alu 1 300 -12 3078 179 50 30 chr11 84832041 84832614 -65950939 - MER61-int LTR ERV1 -253 6727 3457 2579 62 0 10 chr11 84832614 84832922 -65950631 - AluY SINE Alu -6 305 1 223 362 92 7 chr11 84833079 84833231 -65950322 - MIR SINE MIR -65 197 33 * 546 249 23 52 chr11 84833182 84833355 -65950198 + MIR3 SINE MIR 29 196 -12 1769 151 30 30 chr11 84833885 84834183 -65949370 - AluJo SINE Alu -11 301 4 2199 114 0 40 chr11 84834201 84834526 -65949027 - AluSx SINE Alu 0 312 1 340 251 155 21 chr11 84834550 84834737 -65948816 - L2 LINE L2 -12 3301 3090 458 218 184 63 chr11 84835272 84835446 -65948107 - MIR SINE MIR -54 208 14 1282 194 93 11 chr11 84835542 84835820 -65947733 - AluJb SINE Alu -1 301 1 388 176 11 66 chr11 84835862 84835953 -65947600 + MIR3 SINE MIR 116 201 -7 680 243 88 22 chr11 84836001 84836227 -65947326 + L1MC4a LINE L1 5624 5864 -1944 2463 84 0 0 chr11 84836238 84836537 -65947016 + AluSx SINE Alu 1 299 -13 1072 171 11 0 chr11 84836537 84836712 -65946841 + AluSg/x SINE Alu 132 308 -2 233 274 16 0 chr11 84836719 84836781 -65946772 + (TA)n Simple_repeat Simple_repeat 1 63 0 408 93 0 0 chr11 84836888 84836942 -65946611 - Alu SINE Alu -18 294 241 1746 171 34 10 chr11 84836958 84837251 -65946302 - AluJo SINE Alu -10 302 3 263 71 24 0 chr11 84837294 84837336 -65946217 + (TC)n Simple_repeat Simple_repeat 2 44 0 198 0 0 0 chr11 84837367 84837389 -65946164 + (TTTC)n Simple_repeat Simple_repeat 1 22 0 239 272 58 69 chr11 84837399 84837486 -65946067 + MIR SINE MIR 34 119 -89 630 241 67 31 chr11 84837772 84837996 -65945557 + MLT1K LTR MaLR 346 577 -11 857 258 183 16 chr11 84838013 84838401 -65945152 + LTR33 LTR ERVL 3 455 -66 2286 118 0 3 chr11 84838402 84838706 -65944847 + AluSx SINE Alu 1 303 -9 2274 99 10 0 chr11 84838718 84839012 -65944541 + AluSx SINE Alu 1 297 -15 234 254 0 0 chr11 84839013 84839072 -65944481 + LTR33 LTR ERVL 445 503 -18 725 294 32 18 chr11 84839194 84839412 -65944141 - MIR SINE MIR -22 240 20 573 288 189 29 chr11 84839436 84839717 -65943836 + L2 LINE L2 2983 3308 -5 374 273 116 8 chr11 84839787 84839941 -65943612 - MIR SINE MIR -63 145 3 1769 86 0 0 chr11 84840461 84840682 -65942871 + AluSq SINE Alu 85 305 -8 546 179 134 8 chr11 84840696 84840830 -65942723 + L1ME3A LINE L1 6017 6167 -3 2073 127 3 41 chr11 84842075 84842391 -65941162 + AluJo SINE Alu 1 304 -8 893 169 142 6 chr11 84842411 84842594 -65940959 + AluJb SINE Alu 87 294 -18 1235 160 0 24 chr11 84842747 84842934 -65940619 + AluJb SINE Alu 112 295 -17 2458 100 0 0 chr11 84842934 84843244 -65940309 + AluSx SINE Alu 1 310 -2 1235 160 0 24 chr11 84843244 84843262 -65940291 + AluJb SINE Alu 295 312 0 658 218 0 0 chr11 84843288 84843412 -65940141 + FLAM_A SINE Alu 11 134 -8 1938 182 116 32 chr11 84843449 84843915 -65939638 + MLT1D LTR MaLR 1 505 0 3871 164 34 20 chr11 84843921 84844093 -65939460 - MER50 LTR ERV1 -23 711 543 2359 117 0 0 chr11 84844093 84844401 -65939152 + AluSx SINE Alu 1 308 -4 3871 164 34 20 chr11 84844401 84844929 -65938624 - MER50 LTR ERV1 -191 543 1 913 128 0 8 chr11 84845624 84845757 -65937796 + FLAM_C SINE Alu 1 132 -1 208 311 0 0 chr11 84845976 84846050 -65937503 + MIR3 SINE MIR 116 189 -19 304 274 27 0 chr11 84846505 84846578 -65936975 - MIR SINE MIR -61 147 73 1901 134 16 16 chr11 84846585 84846756 -65936797 - AluJo SINE Alu -7 305 135 188 35 35 0 chr11 84846756 84846785 -65936768 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1952 124 3 0 chr11 84846785 84847067 -65936486 - AluJb SINE Alu -29 283 1 1901 134 16 16 chr11 84847067 84847199 -65936354 - AluJo SINE Alu -175 137 1 2108 101 0 0 chr11 84847200 84847508 -65936045 - AluSx SINE Alu 0 314 7 349 255 0 32 chr11 84847690 84847784 -65935769 - MER5A DNA MER1_type -83 106 16 1717 107 96 31 chr11 84847814 84848105 -65935448 - AluSx SINE Alu -2 310 1 538 222 44 44 chr11 84848111 84848291 -65935262 + L2 LINE L2 3112 3291 -22 2218 77 34 0 chr11 84848391 84848688 -65934865 - AluSp SINE Alu -6 307 1 1523 176 7 7 chr11 84848688 84848971 -65934582 - AluJo SINE Alu -12 300 18 318 88 55 33 chr11 84849007 84849098 -65934455 + (TA)n Simple_repeat Simple_repeat 2 94 0 900 127 8 0 chr11 84849104 84849230 -65934323 - FLAM_C SINE Alu -6 127 1 2117 108 7 0 chr11 84849342 84849637 -65933916 + AluSx SINE Alu 1 297 -15 1593 135 0 4 chr11 84849670 84849914 -65933639 + AluJb SINE Alu 47 289 -23 2035 136 3 10 chr11 84850342 84850520 -65933033 - AluSx SINE Alu 0 312 135 1861 93 0 12 chr11 84850520 84850778 -65932775 - AluSx SINE Alu -14 298 44 2035 136 3 10 chr11 84850778 84850909 -65932644 - AluSx SINE Alu -177 135 5 1671 146 27 27 chr11 84851411 84851548 -65932005 + AluSx SINE Alu 1 137 -175 2082 121 3 0 chr11 84851548 84851846 -65931707 + AluSx SINE Alu 1 299 -13 2327 67 0 10 chr11 84851849 84852147 -65931406 + AluY SINE Alu 3 297 -14 1671 146 27 27 chr11 84852147 84852306 -65931247 + AluSx SINE Alu 138 301 -11 203 240 179 78 chr11 84852655 84852834 -65930719 - MIR3 SINE MIR -7 201 5 520 134 24 0 chr11 84852874 84852956 -65930597 - FLAM_C SINE Alu -25 118 35 1812 73 9 0 chr11 84853061 84853294 -65930259 + AluSx SINE Alu 1 235 -77 1797 161 0 7 chr11 84853319 84853617 -65929936 - AluJb SINE Alu -16 296 1 2180 104 0 10 chr11 84853978 84854286 -65929267 - AluSg SINE Alu -5 305 1 1432 167 10 61 chr11 84854357 84854507 -65929046 + AluJo SINE Alu 1 128 -184 2239 95 3 0 chr11 84854507 84854803 -65928750 + AluSg SINE Alu 1 297 -13 1432 167 10 61 chr11 84854803 84854964 -65928589 + AluJo SINE Alu 128 296 -16 2078 95 7 7 chr11 84855120 84855444 -65928109 - AluSx SINE Alu 0 312 1 290 210 98 20 chr11 84855524 84855656 -65927897 + MIR SINE MIR 37 178 -62 240 35 0 0 chr11 84855680 84855709 -65927844 + AluY SINE Alu 2 30 -272 1446 122 0 5 chr11 84855709 84855931 -65927622 + AluSg/x SINE Alu 85 305 -7 274 396 0 0 chr11 84856133 84856234 -65927319 - MIR3 SINE MIR -10 198 98 980 196 52 8 chr11 84856532 84856782 -65926771 - L1M4 LINE L1 -1513 4633 4373 1934 125 0 26 chr11 84856787 84857098 -65926455 - AluSq SINE Alu -10 303 1 454 325 75 0 chr11 84857351 84857511 -65926042 - MIR SINE MIR -6 256 85 461 307 42 12 chr11 84857683 84857849 -65925704 + MIR3 SINE MIR 38 208 0 1682 149 0 23 chr11 84858317 84858626 -65924927 + AluSq SINE Alu 1 302 -11 369 209 116 0 chr11 84858711 84858797 -65924756 + MIR SINE MIR 54 149 -59 205 167 0 0 chr11 84859124 84859160 -65924393 + (TG)n Simple_repeat Simple_repeat 2 37 0 476 114 0 0 chr11 84859278 84859348 -65924205 - AluJo SINE Alu -16 296 227 192 40 0 0 chr11 84859521 84859546 -65924007 + (TATG)n Simple_repeat Simple_repeat 3 27 0 1425 155 20 28 chr11 84859546 84859798 -65923755 - AluJo SINE Alu -62 250 1 2059 105 3 3 chr11 84859811 84860105 -65923448 - AluSx SINE Alu -17 295 2 1419 97 15 0 chr11 84860146 84860341 -65923212 - AluSg/x SINE Alu -30 282 85 365 331 14 33 chr11 84860585 84860775 -65922778 - MIR SINE MIR -23 239 6 1942 128 7 0 chr11 84860910 84861207 -65922346 - AluSx SINE Alu -13 299 1 1719 150 25 0 chr11 84861356 84861630 -65921923 - AluJb SINE Alu -31 281 1 527 299 102 49 chr11 84861919 84862223 -65921330 - LTR16C LTR ERVL 0 491 172 336 363 19 6 chr11 84862567 84862727 -65920826 - HERVL LTR ERVL -308 5346 5185 914 308 26 56 chr11 84862813 84863065 -65920488 - HERVL LTR ERVL -3284 2480 2245 2099 103 0 26 chr11 84863065 84863367 -65920186 + AluSx SINE Alu 1 294 -18 914 308 26 56 chr11 84863367 84863543 -65920010 - HERVL LTR ERVL -3519 2245 2065 318 237 69 76 chr11 84863546 84863571 -65919982 + MIR SINE MIR 120 144 -118 1735 137 4 4 chr11 84863571 84863848 -65919705 + AluSx SINE Alu 1 277 -35 225 0 0 0 chr11 84863853 84863878 -65919675 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 318 237 69 76 chr11 84863878 84863977 -65919576 + MIR SINE MIR 148 249 -13 963 249 51 16 chr11 84864075 84864328 -65919225 + MIR SINE MIR 1 262 0 1671 148 79 0 chr11 84864329 84864606 -65918947 - AluJb SINE Alu -13 299 1 529 138 12 0 chr11 84864730 84864810 -65918743 - MER72 LTR ERV1 -57 665 585 777 249 48 14 chr11 84864858 84865067 -65918486 - MIR SINE MIR 0 262 47 182 397 0 0 chr11 84865277 84865345 -65918208 + L2 LINE L2 3205 3272 0 1711 167 24 29 chr11 84865404 84865745 -65917808 - MLT2C1 LTR ERVL -56 341 3 1585 161 59 3 chr11 84865746 84866032 -65917521 + AluJb SINE Alu 1 302 -10 252 267 53 0 chr11 84866466 84866541 -65917012 - L1MC/D LINE L1 -1916 5892 5814 992 417 40 33 chr11 84866558 84866858 -65916695 + AluJo SINE Alu 1 302 0 21 0 0 0 chr11 84867179 84867200 -65916353 + AT_rich Low_complexity Low_complexity 1 21 0 2395 84 0 0 chr11 84868196 84868507 -65915046 + AluY SINE Alu 1 311 0 1490 175 3 34 chr11 84868782 84869079 -65914474 - AluJo SINE Alu -24 288 1 2226 100 0 0 chr11 84869225 84869526 -65914027 + AluSx SINE Alu 1 301 -11 1263 165 0 5 chr11 84870162 84870380 -65913173 + L1MA4 LINE L1 6060 6276 -24 1444 208 7 11 chr11 84870500 84870784 -65912769 - AluJb SINE Alu -29 283 1 2209 103 0 0 chr11 84871039 84871329 -65912224 - AluSx SINE Alu -16 296 7 187 280 0 40 chr11 84871335 84871385 -65912168 - L2 LINE L2 -10 3262 3215 243 263 221 11 chr11 84871548 84871643 -65911910 - MIR SINE MIR -147 115 1 1736 169 0 3 chr11 84871903 84872198 -65911355 + AluJb SINE Alu 1 294 -18 476 252 48 34 chr11 84872292 84872439 -65911114 - MIR SINE MIR -50 212 64 1768 153 3 13 chr11 84872446 84872747 -65910806 - AluJo SINE Alu -11 301 4 308 253 115 0 chr11 84873529 84873616 -65909937 + MER5A DNA MER1_type 10 106 -83 270 0 0 0 chr11 84873621 84873651 -65909902 + (T)n Simple_repeat Simple_repeat 1 30 0 294 360 52 20 chr11 84873897 84874050 -65909503 - MIR3 SINE MIR -10 198 41 980 196 52 8 chr11 84874295 84874545 -65909008 - L1M4 LINE L1 -1513 4633 4373 1983 119 0 26 chr11 84874550 84874860 -65908693 - AluSx SINE Alu -10 302 1 631 303 97 13 chr11 84874952 84875180 -65908373 - MIR SINE MIR -4 258 12 303 258 0 0 chr11 84875835 84875901 -65907652 + MIR3 SINE MIR 139 204 -4 354 111 0 0 chr11 84876592 84876646 -65906907 + Alu SINE Alu 239 292 -8 1134 108 70 5 chr11 84876646 84876832 -65906721 - L1MC1 LINE L1 -310 6023 5826 2295 62 14 0 chr11 84877965 84878253 -65905300 + AluSp SINE Alu 1 292 -21 1760 172 7 0 chr11 84878962 84879270 -65904283 - AluJb SINE Alu -2 310 1 347 329 44 15 chr11 84879923 84880060 -65903493 - MIR SINE MIR -120 142 2 1893 132 34 0 chr11 84881728 84882023 -65901530 + AluSx SINE Alu 1 305 -7 1374 124 0 0 chr11 84882231 84882424 -65901129 - AluSg/x SINE Alu -20 290 98 2527 164 79 13 chr11 84882437 84882984 -65900569 - L1MB4 LINE L1 0 6180 5598 2214 90 7 0 chr11 84883052 84883351 -65900202 + AluSp SINE Alu 1 301 -12 2159 89 0 10 chr11 84883428 84883559 -65899994 + AluSp SINE Alu 5 136 -177 1981 116 0 13 chr11 84883559 84883860 -65899693 + AluSq SINE Alu 1 297 -16 2159 89 0 10 chr11 84883860 84884030 -65899523 + AluSp SINE Alu 136 303 -10 2319 80 0 0 chr11 84885063 84885363 -65898190 + AluSx SINE Alu 1 300 -12 320 338 86 7 chr11 84885764 84885903 -65897650 + MIR SINE MIR 3 152 -110 803 144 0 15 chr11 84885914 84886046 -65897507 + FLAM_C SINE Alu 13 142 -1 1971 142 3 3 chr11 84886087 84886389 -65897164 - AluSx SINE Alu -10 302 1 2170 106 0 0 chr11 84886575 84886877 -65896676 - AluY SINE Alu -9 302 1 344 135 14 0 chr11 84887530 84887604 -65895949 + (TA)n Simple_repeat Simple_repeat 2 76 0 714 87 19 0 chr11 84887605 84887708 -65895845 - AluSg/x SINE Alu -16 293 189 2063 114 17 0 chr11 84887808 84888105 -65895448 - AluSx SINE Alu -8 304 3 23 0 0 0 chr11 84888108 84888131 -65895422 + AT_rich Low_complexity Low_complexity 1 23 0 1940 115 0 0 chr11 84888152 84888422 -65895131 - AluSx SINE Alu -42 270 1 785 286 163 17 chr11 84888682 84889147 -65894406 + L2 LINE L2 2175 2707 -607 2094 95 0 0 chr11 84889154 84889467 -65894086 + AluSx SINE Alu 1 313 0 223 259 19 0 chr11 84889623 84889677 -65893876 + L2 LINE L2 3193 3247 -25 1360 147 5 0 chr11 84890159 84890377 -65893176 + AluJb SINE Alu 85 303 -9 1587 143 106 0 chr11 84890859 84891132 -65892421 - AluSx SINE Alu -10 302 1 2273 98 0 0 chr11 84891151 84891457 -65892096 - AluSx SINE Alu -6 306 1 2320 74 0 19 chr11 84891694 84892005 -65891548 - AluY SINE Alu -6 305 1 364 228 139 13 chr11 84892392 84892510 -65891043 + MIR SINE MIR 25 148 -67 817 139 16 0 chr11 84892512 84892634 -65890919 + AluJo SINE Alu 11 134 -178 339 250 36 0 chr11 84892646 84892730 -65890823 + MIR SINE MIR 168 254 -8 2173 76 24 0 chr11 84894100 84894388 -65889165 + AluY SINE Alu 1 295 -16 400 249 43 43 chr11 84894952 84895138 -65888415 - MIR3 SINE MIR -62 146 2 467 281 9 9 chr11 84895366 84895480 -65888073 + MIR SINE MIR 39 152 -56 2031 106 18 11 chr11 84895570 84895852 -65887701 - AluSg SINE Alu -26 284 1 300 219 115 10 chr11 84895852 84895948 -65887605 - MIR SINE MIR -111 151 46 264 301 80 74 chr11 84896163 84896224 -65887329 + MIR3 SINE MIR 38 97 -111 2221 101 3 3 chr11 84896224 84896512 -65887041 - AluSc SINE Alu -21 288 1 2404 84 0 3 chr11 84896513 84896809 -65886744 - AluSx SINE Alu -17 295 1 264 301 80 74 chr11 84896809 84896908 -65886645 + MIR3 SINE MIR 96 201 -7 445 328 65 5 chr11 84897317 84897518 -65886035 + MIR SINE MIR 2 214 -48 2360 88 7 3 chr11 84897892 84898186 -65885367 + AluSc SINE Alu 1 295 -14 1652 149 10 65 chr11 84898265 84898574 -65884979 - AluJb SINE Alu -20 292 1 997 175 139 0 chr11 84898938 84899132 -65884421 - MER58A DNA MER1_type 0 224 4 22 35 0 0 chr11 84899445 84899474 -65884079 + AT_rich Low_complexity Low_complexity 1 29 0 1629 203 61 0 chr11 84899523 84899833 -65883720 + MLT1A1 LTR MaLR 1 329 -36 324 154 92 0 chr11 84899868 84899933 -65883620 + MLT1A1 LTR MaLR 304 374 0 197 281 0 0 chr11 84900537 84900594 -65882959 - MIR3 SINE MIR -2 206 150 1467 142 5 0 chr11 84900639 84900857 -65882696 - AluJb SINE Alu -9 303 85 207 259 19 0 chr11 84901339 84901393 -65882160 - L2 LINE L2 -25 3247 3193 2201 99 0 0 chr11 84901549 84901862 -65881691 - AluSx SINE Alu 0 313 1 604 300 144 5 chr11 84901929 84902332 -65881221 - L2 LINE L2 -681 2633 2175 2056 115 0 0 chr11 84902592 84902862 -65880691 + AluSx SINE Alu 1 270 -42 1292 95 0 26 chr11 84902892 84902909 -65880644 + AluSp SINE Alu 120 136 -177 2130 110 17 7 chr11 84902909 84903200 -65880353 + AluSx SINE Alu 3 296 -16 1292 95 0 26 chr11 84903200 84903371 -65880182 + AluSp SINE Alu 136 303 -10 2329 82 0 13 chr11 84904404 84904709 -65878844 + AluSx SINE Alu 1 301 -11 270 348 74 7 chr11 84905111 84905246 -65878307 + MIR SINE MIR 3 146 -116 773 150 0 0 chr11 84905261 84905374 -65878179 + FLAM_C SINE Alu 13 125 -18 2100 135 0 13 chr11 84905860 84906041 -65877512 - AluSx SINE Alu 0 312 135 1895 108 0 12 chr11 84906041 84906300 -65877253 - AluSx SINE Alu -13 299 44 2100 135 0 13 chr11 84906300 84906430 -65877123 - AluSx SINE Alu -177 135 5 1005 132 0 0 chr11 84906932 84907068 -65876485 + AluSq/x SINE Alu 1 136 -177 2223 117 3 0 chr11 84907069 84907367 -65876186 + AluSx SINE Alu 1 299 -13 2372 74 0 14 chr11 84907370 84907667 -65875886 + AluY SINE Alu 3 295 -16 2142 97 0 49 chr11 84909407 84909715 -65873838 - AluSx SINE Alu -19 293 1 220 235 277 0 chr11 84909755 84909874 -65873679 + L2 LINE L2 3162 3313 0 427 194 97 11 chr11 84910442 84910535 -65873018 - MIR SINE MIR -139 123 23 248 291 29 63 chr11 84910571 84910731 -65872822 - MIR SINE MIR -79 183 28 598 225 42 61 chr11 84910731 84910944 -65872609 + MER58C DNA MER1_type 3 211 -4 248 291 29 63 chr11 84910944 84910958 -65872595 - MIR SINE MIR -234 28 15 1661 177 7 27 chr11 84911213 84911507 -65872046 + AluJo SINE Alu 1 288 -24 351 259 65 19 chr11 84912445 84912553 -65871000 + MER82 DNA MER2_type 540 652 -1 212 242 15 30 chr11 84912554 84912620 -65870933 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 1930 150 3 3 chr11 84912654 84912948 -65870605 + AluSx SINE Alu 1 294 -18 525 326 6 6 chr11 84912952 84913124 -65870429 - ERVL LTR ERVL -3528 2236 2065 1772 134 11 7 chr11 84913152 84913428 -65870125 + AluSx SINE Alu 1 277 -35 225 0 0 0 chr11 84913434 84913459 -65870094 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 237 314 66 36 chr11 84913883 84914020 -65869533 + MIR SINE MIR 2 142 -120 1875 171 7 0 chr11 84914674 84914979 -65868574 + AluJb SINE Alu 1 307 -5 1746 150 58 0 chr11 84915205 84915479 -65868074 + AluJo SINE Alu 7 296 -16 2192 52 0 0 chr11 84916300 84916549 -65867004 + AluY SINE Alu 42 290 -21 2234 124 0 0 chr11 84916560 84916859 -65866694 + AluSx SINE Alu 5 303 -9 1626 119 129 7 chr11 84916988 84917266 -65866287 - AluSx SINE Alu 0 312 1 253 281 150 26 chr11 84917332 84917485 -65866068 - L3 LINE CR1 -148 1429 1258 357 299 8 8 chr11 84917586 84917703 -65865850 - L2 LINE L2 -9 3304 3188 248 202 93 93 chr11 84917972 84918011 -65865542 - L1MC4a LINE L1 -1883 5925 5887 1582 141 112 0 chr11 84918011 84918280 -65865273 - AluJb SINE Alu -10 302 4 248 202 93 93 chr11 84918280 84918293 -65865260 - L1MC4a LINE L1 -1921 5887 5875 306 50 0 0 chr11 84918293 84918333 -65865220 + (TG)n Simple_repeat Simple_repeat 1 40 0 248 202 93 93 chr11 84918333 84918408 -65865145 - L1MC4a LINE L1 -1932 5876 5797 2531 201 74 30 chr11 84918409 84918803 -65864750 - MLT1E LTR MaLR 0 593 165 1587 174 47 0 chr11 84918803 84919078 -65864475 + AluJb SINE Alu 1 288 -24 2531 201 74 30 chr11 84919078 84919251 -65864302 - MLT1E LTR MaLR -428 165 1 479 251 16 14 chr11 84919254 84919433 -65864120 - L1MC4a LINE L1 -323 5798 5622 1134 83 0 0 chr11 84919489 84919622 -65863931 - AluSp SINE Alu -180 133 1 629 266 181 0 chr11 84919622 84919859 -65863694 - L1MC4a LINE L1 -2172 5636 5357 1988 145 3 0 chr11 84919869 84920152 -65863401 - AluSx SINE Alu -28 284 1 688 189 30 23 chr11 84920154 84920286 -65863267 - AluJo SINE Alu -178 134 2 2140 130 0 0 chr11 84920336 84920628 -65862925 - AluSx SINE Alu -20 292 1 842 160 0 0 chr11 84920674 84920799 -65862754 + AluJb SINE Alu 1 125 -187 362 202 62 106 chr11 84920815 84921023 -65862530 + L1MC/D LINE L1 5317 5515 -2293 * 564 309 70 37 chr11 84921012 84921682 -65861871 + L1M4 LINE L1 4229 4920 -1226 359 297 55 25 chr11 84921755 84921991 -65861562 + L1M4 LINE L1 5030 5272 -874 1806 157 0 39 chr11 84922001 84922307 -65861246 + AluJb SINE Alu 7 300 -12 688 190 13 19 chr11 84922311 84922469 -65861084 + AluJb SINE Alu 137 293 -19 414 111 0 16 chr11 84922484 84922547 -65861006 + AluY SINE Alu 2 63 -255 2436 173 53 26 chr11 84922548 84923040 -65860513 + LTR22 LTR ERVK 1 505 -4 1859 89 8 4 chr11 84923041 84923287 -65860266 + AluY SINE Alu 56 302 -9 1486 112 156 63 chr11 84923290 84923423 -65860130 + AluSg SINE Alu 1 120 -190 2271 100 3 13 chr11 84923423 84923734 -65859819 + AluSc SINE Alu 1 308 -1 1486 112 156 63 chr11 84923734 84923869 -65859684 + AluSg SINE Alu 120 294 -16 2141 97 0 49 chr11 84925609 84925917 -65857636 - AluSx SINE Alu -19 293 1 220 235 277 0 chr11 84925957 84926076 -65857477 + L2 LINE L2 3162 3313 0 427 194 97 11 chr11 84926643 84926736 -65856817 - MIR SINE MIR -139 123 23 238 297 29 63 chr11 84926772 84926932 -65856621 - MIR SINE MIR -79 183 28 588 230 48 48 chr11 84926932 84927141 -65856412 + MER58C DNA MER1_type 3 211 -4 238 297 29 63 chr11 84927141 84927155 -65856398 - MIR SINE MIR -234 28 15 1646 180 7 27 chr11 84927410 84927704 -65855849 + AluJo SINE Alu 1 288 -24 326 269 65 19 chr11 84928642 84928750 -65854803 + MER82 DNA MER2_type 540 652 -1 207 100 0 0 chr11 84928781 84928811 -65854742 + (CATATA)n Simple_repeat Simple_repeat 6 35 0 2179 110 0 10 chr11 84928853 84929154 -65854399 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr11 84929281 84929302 -65854251 + (A)n Simple_repeat Simple_repeat 1 21 0 1222 141 141 13 chr11 84929863 84930097 -65853456 + L1MD3 LINE L1 7732 7995 0 1703 163 0 39 chr11 84930107 84930414 -65853139 + AluJo SINE Alu 1 295 -17 420 243 49 35 chr11 84930512 84930656 -65852897 - MIR SINE MIR -53 209 64 1904 149 3 13 chr11 84930663 84930964 -65852589 - AluJo SINE Alu -11 301 4 375 248 153 6 chr11 84931746 84931838 -65851715 + MER5A DNA MER1_type 10 87 -102 1855 145 7 7 chr11 84931838 84932134 -65851419 - AluJb SINE Alu -16 296 1 375 248 153 6 chr11 84932134 84932198 -65851355 + MER5A DNA MER1_type 87 189 0 318 237 148 41 chr11 84932233 84932402 -65851151 + MIR SINE MIR 57 243 -19 2061 86 15 95 chr11 84933560 84933886 -65849667 + AluSq SINE Alu 1 300 -13 1641 177 45 75 chr11 84933944 84934408 -65849145 + LTR7 LTR ERV1 1 450 0 9480 205 21 42 chr11 84934408 84937628 -65845925 + HERVH LTR ERV1 1 3124 -3524 3782 120 0 5 chr11 84937623 84938174 -65845379 + HERVH LTR ERV1 3329 3876 -3837 * 2841 210 0 0 chr11 84938170 84938690 -65844863 + HERVH LTR ERV1 7038 7557 -156 * 289 336 9 9 chr11 84939284 84939397 -65844156 + HERVH LTR ERV1 874 986 -7271 330 230 92 17 chr11 84939516 84939671 -65843882 + HERVH LTR ERV1 6543 7713 0 1567 191 32 75 chr11 84939671 84940141 -65843412 + LTR7 LTR ERV1 1 450 0 245 257 71 0 chr11 84940169 84940239 -65843314 - L3 LINE CR1 -174 1403 1329 405 186 0 0 chr11 84940421 84940491 -65843062 - AluJo SINE Alu -11 301 232 974 109 22 0 chr11 84940492 84940630 -65842923 - AluJo SINE Alu -171 141 1 245 270 70 59 chr11 84940679 84940949 -65842604 + L1ME LINE L1 5591 5863 -258 2168 120 0 0 chr11 84941072 84941363 -65842190 - AluSx SINE Alu -21 291 1 2448 77 7 0 chr11 84941386 84941686 -65841867 - AluY SINE Alu -9 302 1 2313 94 7 0 chr11 84941687 84941984 -65841569 - AluSp SINE Alu -14 299 1 434 214 71 0 chr11 84941984 84942082 -65841471 - L1 LINE L1 -901 5245 5141 2158 92 24 3 chr11 84942082 84942374 -65841179 + AluSx SINE Alu 1 298 -14 2210 99 7 3 chr11 84942530 84942853 -65840700 - AluSx SINE Alu 0 312 1 258 193 114 11 chr11 84942976 84943064 -65840489 + MIR SINE MIR 82 178 -84 236 35 0 0 chr11 84943088 84943117 -65840436 + AluY SINE Alu 2 30 -271 1525 122 0 5 chr11 84943117 84943339 -65840214 + AluSg/x SINE Alu 83 303 -7 1179 154 141 13 chr11 84944082 84944316 -65839237 + L1MD3 LINE L1 7732 7995 0 1736 171 0 31 chr11 84944326 84944648 -65838905 + AluJo SINE Alu 1 312 0 2162 102 0 11 chr11 84944668 84944976 -65838577 - AluSx SINE Alu 0 305 1 2250 106 3 7 chr11 84945034 84945327 -65838226 - AluSq SINE Alu -21 292 1 2000 116 0 34 chr11 84945720 84946014 -65837539 + AluSx SINE Alu 1 307 0 208 0 0 0 chr11 84946014 84946037 -65837516 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1723 159 7 14 chr11 84946080 84946376 -65837177 + AluY SINE Alu 1 294 -17 203 212 155 0 chr11 84946736 84946869 -65836684 - MIR SINE MIR -50 212 94 271 286 170 9 chr11 84946876 84946988 -65836565 - MER5A DNA MER1_type -1 188 59 408 238 12 0 chr11 84947067 84947151 -65836402 + FRAM/FAM SINE Alu 1 84 -92 1631 175 0 18 chr11 84947153 84947433 -65836120 + AluJo SINE Alu 21 295 -17 2492 59 10 0 chr11 84947433 84947736 -65835817 + AluY SINE Alu 1 306 -5 2413 98 0 0 chr11 84947974 84948281 -65835272 + AluSx SINE Alu 1 307 -5 1676 150 106 0 chr11 84948300 84948573 -65834980 + AluSx SINE Alu 1 302 -10 2337 103 0 13 chr11 84949055 84949367 -65834186 - AluSg SINE Alu -2 308 1 1913 167 7 7 chr11 84949462 84949767 -65833786 + AluSx SINE Alu 5 309 -3 35 24 0 0 chr11 84949797 84949839 -65833714 + AT_rich Low_complexity Low_complexity 1 42 0 279 308 44 57 chr11 84950007 84950166 -65833387 - MIR SINE MIR -59 203 47 618 105 18 70 chr11 84950933 84951047 -65832506 - FLAM_C SINE Alu 0 143 36 614 216 64 0 chr11 84951084 84951209 -65832344 + FLAM_A SINE Alu 1 133 0 463 196 101 14 chr11 84951608 84951746 -65831807 + L1ME4a LINE L1 5960 6109 -12 224 221 206 0 chr11 84951867 84951935 -65831618 + MIR SINE MIR 117 198 -64 1948 149 3 0 chr11 84951982 84952277 -65831276 - AluJb SINE Alu -13 299 4 2324 92 10 10 chr11 84952666 84952971 -65830582 + AluSg SINE Alu 6 310 0 881 127 0 0 chr11 84953956 84954074 -65829479 + AluJb SINE Alu 1 118 -194 182 234 21 43 chr11 84954501 84954548 -65829005 + L2 LINE L2 3193 3238 -34 2653 53 0 0 chr11 84954664 84954967 -65828586 - AluY SINE Alu -8 303 1 217 241 69 0 chr11 84954970 84955028 -65828525 + MIR SINE MIR 117 178 -84 2062 119 7 7 chr11 84955119 84955251 -65828302 + AluSp SINE Alu 1 132 -181 2103 116 0 13 chr11 84955251 84955552 -65828001 + AluSq SINE Alu 1 297 -16 2062 119 7 7 chr11 84955552 84955722 -65827831 + AluSp SINE Alu 131 303 -10 2458 80 0 0 chr11 84956755 84957056 -65826497 + AluSx SINE Alu 1 301 -11 270 348 74 7 chr11 84957457 84957592 -65825961 + MIR SINE MIR 3 146 -116 1434 136 66 51 chr11 84957607 84957689 -65825864 + AluJb SINE Alu 13 92 -220 2284 101 47 49 chr11 84957689 84958054 -65825499 + THE1B LTR MaLR 1 364 0 12055 80 10 1 chr11 84958056 84959619 -65823934 + THE1B-int LTR MaLR 3 1580 0 1770 138 107 58 chr11 84959619 84959966 -65823587 + THE1B LTR MaLR 1 364 0 1434 136 66 51 chr11 84959966 84960136 -65823417 + AluJb SINE Alu 91 273 -39 251 286 0 0 chr11 84960144 84960214 -65823339 + GA-rich Low_complexity Low_complexity 4 73 0 180 274 231 8 chr11 84960429 84960546 -65823007 - MIR SINE MIR -108 154 12 215 149 45 90 chr11 84960782 84960849 -65822704 + MIR SINE MIR 37 100 -162 250 164 0 33 chr11 84961635 84961696 -65821857 - L1MC4 LINE L1 -1344 6698 6640 2179 142 7 0 chr11 84961716 84962026 -65821527 + AluSx SINE Alu 1 312 0 884 156 0 50 chr11 84962041 84962201 -65821352 + FRAM SINE Alu 1 152 -24 571 128 0 0 chr11 84962202 84962280 -65821273 - FRAM SINE Alu -79 97 20 271 362 94 0 chr11 84962414 84962563 -65820990 + L2 LINE L2 3108 3270 -2 2279 88 0 0 chr11 84962691 84963002 -65820551 - AluY SINE Alu 0 311 1 4302 147 24 11 chr11 84963198 84963900 -65819653 + MER50 LTR ERV1 1 711 -23 2275 113 0 3 chr11 84963954 84964256 -65819297 - AluSq SINE Alu -12 301 1 2029 138 16 0 chr11 84964259 84964564 -65818989 - AluSx SINE Alu -2 310 1 1103 163 22 0 chr11 84964605 84964789 -65818764 - AluJo SINE Alu -12 300 113 248 231 0 0 chr11 84964796 84964835 -65818718 + Alu SINE Alu 219 257 -45 2145 106 3 23 chr11 84965189 84965491 -65818062 - AluSc SINE Alu -13 296 1 650 192 30 91 chr11 84965622 84965716 -65817837 + L1ME3A LINE L1 5618 5695 -475 2598 61 0 0 chr11 84965716 84966012 -65817541 + AluY SINE Alu 1 296 -15 650 192 30 91 chr11 84966012 84966115 -65817438 + L1ME3A LINE L1 5695 5803 -367 992 191 86 9 chr11 84966121 84966331 -65817222 + Charlie1 DNA MER1_type 1 226 -2535 518 146 106 8 chr11 84966329 84966452 -65817101 + Charlie1 DNA MER1_type 2623 2757 -4 * 786 192 104 132 chr11 84966452 84966646 -65816907 + L1ME3A LINE L1 5799 5980 -190 1989 144 10 0 chr11 84966646 84966944 -65816609 + AluJb SINE Alu 1 301 -11 786 192 104 132 chr11 84966944 84967113 -65816440 + L1ME3A LINE L1 5980 6152 -18 641 235 235 17 chr11 84967120 84967469 -65816084 - HAL1 LINE L1 -913 1594 1170 235 216 54 14 chr11 84967528 84967602 -65815951 - HAL1 LINE L1 -1456 1051 975 272 88 0 0 chr11 84967743 84967777 -65815776 - Alu SINE Alu -262 38 5 1830 171 3 3 chr11 84967897 84968184 -65815369 + AluJo SINE Alu 1 287 -25 1050 146 0 7 chr11 84968191 84968342 -65815211 - AluJo SINE Alu -162 150 1 226 402 100 7 chr11 84968372 84968663 -65814890 + L2 LINE L2 2593 2910 -404 * 350 235 134 20 chr11 84968657 84968806 -65814747 - MIR SINE MIR -85 177 12 470 319 91 62 chr11 84968860 84969410 -65814143 + L2 LINE L2 2529 3121 -192 2529 60 3 0 chr11 84969410 84969711 -65813842 - AluY SINE Alu -9 302 1 470 319 91 62 chr11 84969711 84969902 -65813651 + L2 LINE L2 3121 3305 -8 413 207 24 0 chr11 84969996 84970078 -65813475 - U6 snRNA snRNA 0 107 24 6212 109 47 48 chr11 84970079 84970196 -65813357 - Tigger1 DNA MER2_type 0 2418 2302 2348 58 7 7 chr11 84970196 84970491 -65813062 + AluY SINE Alu 1 295 -16 6212 109 47 48 chr11 84970491 84970715 -65812838 - Tigger1 DNA MER2_type -116 2302 2079 2270 118 0 0 chr11 84970715 84971012 -65812541 - AluSq SINE Alu -15 298 2 6212 109 47 48 chr11 84971012 84971651 -65811902 - Tigger1 DNA MER2_type -339 2079 1436 1768 181 0 3 chr11 84971651 84971944 -65811609 + AluJb SINE Alu 5 296 -16 6212 109 47 48 chr11 84971944 84972004 -65811549 - Tigger1 DNA MER2_type -982 1436 1377 883 162 155 101 chr11 84972004 84972141 -65811412 + AluJo SINE Alu 1 129 -183 2103 137 3 10 chr11 84972141 84972455 -65811098 + AluSx SINE Alu 1 312 0 883 162 155 101 chr11 84972455 84972469 -65811084 + AluJo SINE Alu 129 141 -171 1851 167 13 3 chr11 84972469 84972768 -65810785 + AluJb SINE Alu 5 306 -6 883 162 155 101 chr11 84972768 84972911 -65810642 + AluJo SINE Alu 141 312 0 914 205 6 0 chr11 84972961 84973127 -65810426 + AluJb SINE Alu 129 295 -17 5921 117 58 15 chr11 84973129 84973470 -65810083 - Tigger1 DNA MER2_type -1123 1295 970 2090 95 81 0 chr11 84973470 84973754 -65809799 - AluSp SINE Alu -6 307 1 5921 117 58 15 chr11 84973754 84974565 -65808988 - Tigger1 DNA MER2_type -1448 970 1 2233 95 6 25 chr11 84974639 84974955 -65808598 + AluSx SINE Alu 1 310 -2 217 319 29 0 chr11 84975181 84975250 -65808303 + GA-rich Low_complexity Low_complexity 4 74 0 399 316 76 0 chr11 84975367 84975602 -65807951 + L2 LINE L2 2784 3042 -271 260 299 31 10 chr11 84975686 84975783 -65807770 + L2 LINE L2 3167 3265 -7 227 247 188 12 chr11 84975814 84975899 -65807654 - MIR SINE MIR -69 139 39 187 209 47 0 chr11 84976612 84976655 -65806898 - L2 LINE L2 -310 2962 2918 34 0 0 0 chr11 84976918 84976952 -65806601 + AT_rich Low_complexity Low_complexity 1 34 0 1904 98 8 15 chr11 84976978 84977243 -65806310 + AluSq SINE Alu 1 263 -50 343 217 36 0 chr11 84977298 84977381 -65806172 + MIR SINE MIR 162 247 -15 218 340 37 56 chr11 84977437 84977578 -65805975 + L2 LINE L2 2171 2310 -1004 1547 182 38 7 chr11 84977578 84977869 -65805684 - AluJo SINE Alu -12 300 1 218 340 37 56 chr11 84977869 84977889 -65805664 + L2 LINE L2 2310 2329 -985 1215 180 49 12 chr11 84977892 84978136 -65805417 - MLT1D LTR MaLR 0 505 253 2104 120 21 0 chr11 84978479 84978770 -65804783 - AluSg SINE Alu -13 297 1 1889 132 14 0 chr11 84978998 84979285 -65804268 + AluSx SINE Alu 6 296 -16 2029 137 7 10 chr11 84979288 84979595 -65803958 + AluSx SINE Alu 2 307 -5 246 200 129 93 chr11 84979839 84979896 -65803657 + MLT1L LTR MaLR 466 520 -95 378 0 0 0 chr11 84979896 84979938 -65803615 + (CA)n Simple_repeat Simple_repeat 2 43 0 2236 168 58 25 chr11 84979939 84980385 -65803168 - LOR1b LTR ERV1 0 461 1 246 200 129 93 chr11 84980385 84980465 -65803088 + MLT1L LTR MaLR 519 610 -5 605 357 78 20 chr11 84980518 84980916 -65802637 + L2 LINE L2 2852 3272 0 232 119 0 194 chr11 84980942 84981009 -65802544 - AluSp SINE Alu -109 194 141 2044 124 10 3 chr11 84981053 84981343 -65802210 + AluSg SINE Alu 13 304 -6 1837 156 0 41 chr11 84981763 84982077 -65801476 + AluJo SINE Alu 1 301 -11 1100 146 109 0 chr11 84982134 84982326 -65801227 - MLT1F1 LTR MaLR -5 562 350 430 151 0 0 chr11 84982345 84982418 -65801135 - AluS SINE Alu -244 74 2 1455 171 34 90 chr11 84983186 84983409 -65800144 - MLT1A1 LTR MaLR 0 365 171 1975 151 0 0 chr11 84983409 84983716 -65799837 - AluSx SINE Alu 0 307 1 1455 171 34 90 chr11 84983716 84983878 -65799675 - MLT1A1 LTR MaLR -194 171 1 296 242 0 0 chr11 84983929 84983995 -65799558 + L2 LINE L2 3207 3272 0 2434 89 0 3 chr11 84984047 84984350 -65799203 + AluSq SINE Alu 1 302 -11 306 200 14 0 chr11 84984435 84984505 -65799048 + MIR SINE MIR 54 124 -84 205 167 0 0 chr11 84984848 84984884 -65798669 + (TG)n Simple_repeat Simple_repeat 2 37 0 473 114 0 0 chr11 84985002 84985072 -65798481 - AluJo SINE Alu -16 296 227 192 40 0 0 chr11 84985245 84985270 -65798283 + (TATG)n Simple_repeat Simple_repeat 3 27 0 1527 155 20 28 chr11 84985270 84985522 -65798031 - AluJo SINE Alu -62 250 1 2196 105 3 3 chr11 84985535 84985830 -65797723 - AluSx SINE Alu -16 296 2 1506 97 15 0 chr11 84985871 84986066 -65797487 - AluSg/x SINE Alu -30 280 83 320 347 16 0 chr11 84986376 84986500 -65797053 - MIR SINE MIR -131 131 6 2064 128 7 0 chr11 84986635 84986932 -65796621 - AluSx SINE Alu -13 299 1 1831 150 25 0 chr11 84987081 84987355 -65796198 - AluJb SINE Alu -31 281 1 524 299 102 49 chr11 84987644 84987948 -65795605 - LTR16C LTR ERVL 0 491 172 906 294 44 75 chr11 84988538 84988790 -65794763 - ERVL LTR ERVL -3284 2480 2245 2226 103 0 26 chr11 84988790 84989092 -65794461 + AluSx SINE Alu 1 294 -18 906 294 44 75 chr11 84989092 84989268 -65794285 - ERVL LTR ERVL -3519 2245 2065 264 237 69 76 chr11 84989271 84989296 -65794257 + MIR SINE MIR 120 144 -118 1753 152 4 4 chr11 84989296 84989573 -65793980 + AluSx SINE Alu 1 277 -35 225 0 0 0 chr11 84989578 84989603 -65793950 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 264 237 69 76 chr11 84989603 84989702 -65793851 + MIR SINE MIR 148 249 -13 861 244 52 16 chr11 84989802 84990052 -65793501 + MIR SINE MIR 4 262 0 1786 148 79 0 chr11 84990053 84990330 -65793223 - AluJb SINE Alu -13 299 1 524 138 12 0 chr11 84990454 84990534 -65793019 - MER72 LTR ERV1 -57 665 585 691 249 48 14 chr11 84990582 84990791 -65792762 - MIR SINE MIR 0 262 47 1711 167 24 29 chr11 84991128 84991469 -65792084 - MLT2C1 LTR ERVL -56 341 3 1693 161 59 3 chr11 84991470 84991756 -65791797 + AluJb SINE Alu 1 302 -10 940 278 22 50 chr11 84992189 84992282 -65791271 - L1ME4a LINE L1 -226 5895 5801 2112 103 3 37 chr11 84992282 84992582 -65790971 + AluSx SINE Alu 1 290 -22 940 278 22 50 chr11 84992582 84992905 -65790648 - L1ME4a LINE L1 -320 5801 5491 605 288 33 14 chr11 84993565 84993777 -65789776 + MIR SINE MIR 47 262 0 1821 148 32 3 chr11 84993779 84994063 -65789490 - AluSx SINE Alu -20 292 1 413 150 0 0 chr11 84994372 84994432 -65789121 - AluJ/FLAM SINE Alu -251 61 2 2145 110 0 0 chr11 84994784 84995103 -65788450 + AluSx SINE Alu 1 319 0 635 242 165 0 chr11 84995113 84995307 -65788246 - MIR SINE MIR 0 262 37 213 321 142 0 chr11 84995364 84995470 -65788083 + L2 LINE L2 2914 3034 -238 430 264 31 0 chr11 84995676 84995805 -65787748 - MIR SINE MIR -57 151 19 2401 107 0 0 chr11 84996170 84996479 -65787074 - AluSx SINE Alu -3 309 1 1832 173 20 0 chr11 84996480 84996781 -65786772 - AluJb SINE Alu -5 307 1 1876 163 20 0 chr11 84996782 84997082 -65786471 - AluJo SINE Alu -6 306 1 232 291 123 91 chr11 84997094 84997403 -65786150 + L2 LINE L2 2936 3254 -18 255 234 21 64 chr11 84997450 84997544 -65786009 + MER91C DNA MER1_type 17 106 -34 476 281 82 20 chr11 84997557 84997753 -65785800 + MIR SINE MIR 28 235 -27 286 216 206 0 chr11 84998150 84998247 -65785306 + MIR SINE MIR 15 131 -131 867 202 14 14 chr11 84998248 84998458 -65785095 - MLT1B LTR MaLR 0 390 170 354 225 17 69 chr11 84998563 84998726 -65784827 - HsTC2 DNA Tc2 -28 1870 1 1538 123 41 107 chr11 84999071 84999389 -65784164 + AluJb SINE Alu 1 297 -15 327 246 61 1 chr11 84999421 84999553 -65784000 + MIR SINE MIR 1 140 -68 258 241 138 26 chr11 84999567 84999683 -65783870 - L2 LINE L2 -2 3270 3142 293 350 117 33 chr11 84999713 84999893 -65783660 - MIR SINE MIR -48 214 20 201 311 59 59 chr11 85000478 85000613 -65782940 - MIR3 SINE MIR -26 182 48 206 196 20 20 chr11 85000728 85000779 -65782774 - L2 LINE L2 -5 3308 3258 244 314 17 42 chr11 85000795 85000913 -65782640 + MIR SINE MIR 107 221 -41 236 289 161 13 chr11 85000993 85001142 -65782411 + L2 LINE L2 3130 3300 -13 1671 181 49 58 chr11 85001145 85001360 -65782193 - MLT1A1 LTR MaLR 0 365 150 2044 111 3 3 chr11 85001360 85001648 -65781905 - AluSp SINE Alu -22 291 4 2031 92 19 57 chr11 85001648 85001964 -65781589 - AluSx SINE Alu -8 304 1 1671 181 49 58 chr11 85001964 85002112 -65781441 - MLT1A1 LTR MaLR -213 152 4 4360 101 16 23 chr11 85002231 85002847 -65780706 - LTR9 LTR ERV1 0 612 1 3627 144 45 28 chr11 85002890 85002934 -65780619 - LTR58 LTR ERV1 0 679 637 2150 96 0 35 chr11 85002934 85003246 -65780307 + AluSc SINE Alu 1 301 -8 3627 144 45 28 chr11 85003246 85003869 -65779684 - LTR58 LTR ERV1 -42 637 1 340 282 55 0 chr11 85004308 85004418 -65779135 - MER63A DNA MER1_type -2 208 93 2089 96 0 75 chr11 85004419 85004754 -65778799 - AluSp SINE Alu -3 310 1 276 224 45 0 chr11 85004766 85004833 -65778720 - MER63A DNA MER1_type 0 116 47 1836 152 7 16 chr11 85005951 85006254 -65777299 - AluSx SINE Alu -12 300 1 1850 108 15 0 chr11 85006263 85006531 -65777022 - AluSc SINE Alu -2 307 36 379 289 162 15 chr11 85007608 85007812 -65775741 - MIR SINE MIR -17 245 12 572 161 52 84 chr11 85007855 85008010 -65775543 - MIR SINE MIR -44 218 69 1724 134 0 0 chr11 85008245 85008492 -65775061 - AluSq SINE Alu -65 248 2 274 307 138 46 chr11 85009022 85009240 -65774313 - MARNA DNA Mariner -260 326 89 266 291 71 31 chr11 85009147 85009274 -65774279 + MARNA DNA Mariner 396 527 -59 * 587 236 76 6 chr11 85009275 85009432 -65774121 + L3 LINE CR1 1319 1486 -91 273 250 0 17 chr11 85011340 85011400 -65772153 + polypurine Low_complexity Low_complexity 6 64 0 397 226 0 109 chr11 85011407 85011544 -65772009 - MER5B DNA MER1_type -56 122 1 223 291 74 86 chr11 85011582 85011629 -65771924 - MIR SINE MIR -43 219 173 2249 106 0 0 chr11 85011629 85011932 -65771621 + AluSq SINE Alu 1 303 -10 223 291 74 86 chr11 85011932 85012059 -65771494 - MIR SINE MIR -89 173 47 4021 38 0 4 chr11 85012321 85012797 -65770756 - L1PA3 LINE L1 0 6155 5682 1653 151 61 0 chr11 85013303 85013417 -65770136 + AluJb SINE Alu 4 110 -202 441 0 0 0 chr11 85013417 85013466 -65770087 + (CAA)n Simple_repeat Simple_repeat 3 51 0 1653 151 61 0 chr11 85013466 85013629 -65769924 + AluJb SINE Alu 110 298 -14 230 169 52 52 chr11 85014599 85014676 -65768877 - MIR SINE MIR -114 94 18 2265 92 0 13 chr11 85014724 85015029 -65768524 - AluSc SINE Alu -8 301 1 3374 129 50 2 chr11 85015239 85015804 -65767749 + MER51C LTR ERV1 1 572 -68 688 130 37 0 chr11 85015804 85015912 -65767641 - AluSq/x SINE Alu -177 136 25 347 102 17 0 chr11 85015931 85015990 -65767563 + MER51C LTR ERV1 581 640 0 1465 201 64 5 chr11 85016599 85016973 -65766580 + L1ME1 LINE L1 4927 5322 -824 887 118 0 22 chr11 85016980 85017116 -65766437 + AluSq/x SINE Alu 1 133 -179 2637 238 67 38 chr11 85017119 85017373 -65766180 + L1ME1 LINE L1 5314 5559 -607 2582 106 25 5 chr11 85017373 85017741 -65765812 + THE1C LTR MaLR 1 375 0 2637 238 67 38 chr11 85017741 85018271 -65765282 + L1ME1 LINE L1 5559 6126 -40 849 131 0 31 chr11 85018271 85018401 -65765152 + FLAM_C SINE Alu 1 126 -7 2637 238 67 38 chr11 85018401 85018439 -65765114 + L1ME1 LINE L1 6126 6161 -5 233 147 206 59 chr11 85018512 85018614 -65764939 - MER112 DNA MER1_type -143 117 1 461 235 0 0 chr11 85018821 85018902 -65764651 + AluSg/x SINE Alu 205 285 -27 317 256 70 39 chr11 85018918 85019047 -65764506 + L1M4 LINE L1 4567 4699 -1447 814 189 30 12 chr11 85019641 85019810 -65763743 + L1MC4a LINE L1 6617 6788 -1020 2174 117 0 0 chr11 85019860 85020167 -65763386 + AluSx SINE Alu 1 307 -5 2359 53 3 3 chr11 85020243 85020542 -65763011 - AluY SINE Alu -12 299 1 664 258 134 23 chr11 85020542 85020930 -65762623 + L1MC4 LINE L1 7098 7528 -514 2000 126 0 0 chr11 85020937 85021239 -65762314 - AluSx SINE Alu 0 307 6 428 239 173 65 chr11 85021240 85021363 -65762190 + L1MC4 LINE L1 7596 7704 -338 1776 147 45 3 chr11 85021363 85021649 -65761904 - AluJb SINE Alu -13 299 2 428 239 173 65 chr11 85021649 85021923 -65761630 + L1MC4 LINE L1 7704 8036 -6 2304 85 0 0 chr11 85022210 85022504 -65761049 - AluSx SINE Alu -18 294 1 1925 134 19 3 chr11 85022707 85023014 -65760539 + AluJb SINE Alu 1 312 0 243 192 51 128 chr11 85023066 85023144 -65760409 + MIR SINE MIR 34 105 -103 360 161 188 18 chr11 85023191 85023303 -65760250 - MIR SINE MIR 0 262 132 189 344 0 0 chr11 85023304 85023365 -65760188 + L2 LINE L2 2902 2962 -310 277 278 25 0 chr11 85024500 85024606 -65758947 + MIR SINE MIR 81 140 -68 200 225 0 79 chr11 85025684 85025773 -65757780 + (CCCGG)n Simple_repeat Simple_repeat 1 82 0 327 264 28 9 chr11 85025853 85025959 -65757594 + MIR SINE MIR 24 131 -77 220 100 20 20 chr11 85026855 85026905 -65756648 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 399 320 82 43 chr11 85027169 85027472 -65756081 - L2 LINE L2 -45 3227 2913 252 265 112 10 chr11 85028193 85028291 -65755262 - L2 LINE L2 -632 2682 2575 1811 50 0 0 chr11 85028453 85028671 -65754882 - AluY SINE Alu -8 303 86 266 306 56 19 chr11 85028673 85028781 -65754772 - MIR SINE MIR -66 196 85 318 239 220 9 chr11 85029397 85029506 -65754047 - MIR3 SINE MIR -62 146 15 1713 162 6 41 chr11 85029803 85030118 -65753435 - AluJb SINE Alu -8 304 1 205 296 0 0 chr11 85030187 85030241 -65753312 + L2 LINE L2 3133 3186 -86 791 140 0 180 chr11 85030441 85030641 -65752912 - FRAM SINE Alu -12 164 1 185 241 0 89 chr11 85030644 85030723 -65752830 - MER5A DNA MER1_type -117 72 1 195 355 32 0 chr11 85030836 85030898 -65752655 - L2 LINE L2 -84 3188 3125 472 284 96 50 chr11 85031387 85031648 -65751905 - L2 LINE L2 0 3272 3000 1600 155 25 0 chr11 85032382 85032659 -65750894 - AluJo SINE Alu -22 290 7 350 177 0 0 chr11 85032736 85032798 -65750755 - MIR SINE MIR -117 145 84 28 0 0 0 chr11 85033156 85033184 -65750369 + GC_rich Low_complexity Low_complexity 1 28 0 268 232 43 0 chr11 85034925 85035001 -65748552 + MIR SINE MIR 69 148 -60 878 226 18 46 chr11 85035329 85035546 -65748007 + MIR SINE MIR 12 222 -40 638 208 48 24 chr11 85035753 85035921 -65747632 - MIR SINE MIR -48 214 43 275 171 0 43 chr11 85036457 85036527 -65747026 + MIR SINE MIR 71 137 -71 200 216 59 0 chr11 85037040 85037091 -65746462 - MIR SINE MIR -93 169 116 398 254 42 171 chr11 85037563 85037973 -65745580 + L2 LINE L2 2841 3197 -75 299 344 46 0 chr11 85037962 85038093 -65745460 - L2 LINE L2 -3 3269 3133 * 365 351 45 0 chr11 85038320 85038474 -65745079 - MIR SINE MIR -58 204 44 1539 270 75 44 chr11 85038559 85039156 -65744397 + L1MEd LINE L1 3 618 -5501 380 265 0 10 chr11 85039165 85039263 -65744290 + L1MEd LINE L1 666 762 -5357 524 267 55 12 chr11 85039297 85039462 -65744091 + L3 LINE CR1 1356 1527 -50 2670 3 0 0 chr11 85040224 85040518 -65743035 - AluYa5 SINE Alu -17 294 1 251 272 146 0 chr11 85041680 85041790 -65741763 - MIR SINE MIR -64 144 38 496 208 29 15 chr11 85042928 85043126 -65740427 - MER5C DNA MER1_type -2 322 63 1422 226 37 64 chr11 85044215 85044622 -65738931 - MSTD LTR MaLR 0 396 1 406 262 28 0 chr11 85044628 85044735 -65738818 - L2 LINE L2 -5 3308 3199 245 260 10 21 chr11 85045586 85045682 -65737871 + (TG)n Simple_repeat Simple_repeat 1 95 0 352 235 18 18 chr11 85046213 85046383 -65737170 + GA-rich Low_complexity Low_complexity 2 171 0 197 277 0 0 chr11 85047188 85047235 -65736318 - L2 LINE L2 -52 3220 3174 5971 127 48 15 chr11 85047271 85049129 -65734424 - L1PA11 LINE L1 -12 6162 4242 208 290 43 14 chr11 85052531 85052600 -65730953 - MIR3 SINE MIR -28 180 110 300 267 114 30 chr11 85056385 85056516 -65727037 + MIR3 SINE MIR 22 163 -45 487 290 76 59 chr11 85056956 85057194 -65726359 - MIR SINE MIR -19 243 2 247 288 144 0 chr11 85058337 85058456 -65725097 - MIR SINE MIR -94 168 30 196 241 35 35 chr11 85058718 85058776 -65724777 - MIR SINE MIR -113 149 92 295 195 12 12 chr11 85058933 85059015 -65724538 + (TA)n Simple_repeat Simple_repeat 1 82 0 2019 112 0 27 chr11 85059015 85059311 -65724242 - AluSx SINE Alu -24 288 1 469 246 176 7 chr11 85059598 85059740 -65723813 - MIR SINE MIR -14 248 83 1752 135 0 4 chr11 85060258 85060524 -65723029 + AluSx SINE Alu 40 304 -8 284 291 88 76 chr11 85061814 85062065 -65721488 + L2 LINE L2 3019 3272 -41 206 336 48 19 chr11 85062094 85062198 -65721355 + MIR SINE MIR 17 123 -85 372 247 52 13 chr11 85063509 85063624 -65719929 + MIR SINE MIR 71 190 -18 1397 175 3 69 chr11 85063939 85064242 -65719311 + AluJo SINE Alu 7 289 -23 238 279 100 100 chr11 85065596 85065836 -65717717 - L2 LINE L2 -218 3054 2815 378 259 129 9 chr11 85065893 85066009 -65717544 + L2 LINE L2 2334 2463 -851 360 311 120 60 chr11 85066145 85066595 -65716958 + L2 LINE L2 2837 3313 0 199 311 68 19 chr11 85067455 85067558 -65715995 - MIR SINE MIR -31 231 124 419 0 20 0 chr11 85067765 85067816 -65715737 + (TG)n Simple_repeat Simple_repeat 2 53 0 1983 105 0 4 chr11 85067816 85068093 -65715460 - AluSg SINE Alu -34 276 1 1205 223 58 64 chr11 85069453 85069486 -65714067 - L1ME LINE L1 -650 5514 5482 1735 169 17 0 chr11 85069486 85069788 -65713765 - AluJo SINE Alu -5 307 1 1205 223 58 64 chr11 85069788 85070059 -65713494 - L1ME LINE L1 -682 5482 5211 1797 128 10 36 chr11 85070059 85070364 -65713189 - AluSx SINE Alu -15 297 1 1205 223 58 64 chr11 85070364 85070528 -65713025 - L1ME LINE L1 -953 5211 5048 1621 199 0 7 chr11 85070528 85070835 -65712718 - AluJb SINE Alu -6 306 2 1205 223 58 64 chr11 85070835 85071000 -65712553 - L1ME LINE L1 -1116 5048 4882 255 204 23 11 chr11 85071002 85071090 -65712463 + (TA)n Simple_repeat Simple_repeat 1 89 0 403 230 28 73 chr11 85071090 85071268 -65712285 - L1ME LINE L1 -1300 4846 4677 1382 103 0 0 chr11 85071268 85071452 -65712101 + AluSg/x SINE Alu 88 271 -41 4833 71 25 8 chr11 85071455 85071608 -65711945 - THE1A-int LTR MaLR -922 658 509 2361 64 0 0 chr11 85071608 85071905 -65711648 - AluY SINE Alu -14 297 1 4833 71 25 8 chr11 85071905 85072398 -65711155 - THE1A-int LTR MaLR -1071 509 1 444 45 4 0 chr11 85072398 85072454 -65711099 - THE1A LTR MaLR 0 355 306 915 246 54 19 chr11 85072454 85072767 -65710786 - L1ME LINE L1 -1549 4597 4274 753 173 8 8 chr11 85072769 85072902 -65710651 - AluSq/x SINE Alu -178 135 3 1822 201 30 127 chr11 85072903 85073630 -65709923 - L1ME LINE L1 -1978 4168 3512 1337 227 28 33 chr11 85073626 85074022 -65709531 + L1ME1 LINE L1 5633 6026 -140 * 347 316 45 39 chr11 85074076 85074231 -65709322 + L1ME LINE L1 932 1087 -4983 2960 103 12 10 chr11 85074231 85074649 -65708904 + L1PA10 LINE L1 5744 6162 -6 195 100 0 0 chr11 85074652 85074682 -65708871 + (A)n Simple_repeat Simple_repeat 1 30 0 1268 131 225 12 chr11 85074705 85074949 -65708604 + AluJo SINE Alu 1 296 -6 1699 177 48 27 chr11 85075003 85075578 -65707975 + L1M3 LINE L1 4907 5505 -678 * 11106 168 57 58 chr11 85075564 85075682 -65707871 + L1 LINE L1 4 121 -7047 2206 98 0 0 chr11 85075682 85075969 -65707584 - AluSg SINE Alu -23 287 1 11106 168 57 58 chr11 85075969 85078273 -65705280 + L1 LINE L1 121 2436 -4732 3859 185 58 28 chr11 85078271 85078671 -65704882 + L1 LINE L1 3520 3906 -3261 * 2440 69 0 0 chr11 85078671 85078976 -65704577 + AluY SINE Alu 1 305 -6 3859 185 58 28 chr11 85078976 85079333 -65704220 + L1 LINE L1 3906 4251 -2916 2095 116 3 7 chr11 85079333 85079636 -65703917 + AluSx SINE Alu 3 304 -8 1972 136 0 16 chr11 85079636 85079952 -65703601 + AluSx SINE Alu 1 311 -1 3859 185 58 28 chr11 85079952 85080009 -65703544 + L1 LINE L1 4251 4305 -2862 2212 88 0 20 chr11 85080009 85080315 -65703238 + AluSc SINE Alu 1 300 -9 3859 185 58 28 chr11 85080315 85080488 -65703065 + L1 LINE L1 4305 4540 -2627 1112 178 27 37 chr11 85080503 85080545 -65703008 + L1 LINE L1 6118 6159 -1008 1678 176 0 47 chr11 85080545 85080863 -65702690 + AluSx SINE Alu 1 303 -9 1112 178 27 37 chr11 85080863 85081118 -65702435 + L1 LINE L1 6159 6412 -755 825 193 105 7 chr11 85081231 85081457 -65702096 + L1 LINE L1 3043 3245 -2901 2095 116 3 7 chr11 85081457 85081760 -65701793 + AluSx SINE Alu 3 304 -8 1972 136 0 16 chr11 85081760 85082076 -65701477 + AluSx SINE Alu 1 311 -1 825 193 105 7 chr11 85082076 85082133 -65701420 + L1 LINE L1 3244 3355 -2791 253 153 0 106 chr11 85082133 85082222 -65701331 + Alu SINE Alu 1 48 -254 509 226 0 38 chr11 85082534 85082693 -65700860 + L1 LINE L1 3360 3512 -2634 788 137 30 36 chr11 85082717 85082759 -65700794 + L1MB2 LINE L1 5097 5138 -1008 1583 178 0 53 chr11 85082759 85083079 -65700474 + AluSx SINE Alu 1 303 -9 788 137 30 36 chr11 85083079 85083204 -65700349 + L1MB2 LINE L1 5138 5263 -883 1291 126 26 28 chr11 85083305 85083993 -65699560 + L1MB2 LINE L1 5350 6164 -7 823 252 62 29 chr11 85083997 85084303 -65699250 + L1MEc LINE L1 1442 1757 -4639 767 305 29 7 chr11 85084295 85084603 -65698950 - L1MDa LINE L1 -4355 2185 1871 * 2097 84 54 7 chr11 85084611 85084909 -65698644 - AluSq SINE Alu 0 313 2 1120 308 53 44 chr11 85084923 85085175 -65698378 - L1MDa LINE L1 -5262 1268 1020 2156 109 0 0 chr11 85085175 85085477 -65698076 - AluSx SINE Alu -10 302 1 1120 308 53 44 chr11 85085477 85086020 -65697533 - L1MDa LINE L1 -5510 1020 466 389 335 56 24 chr11 85086028 85086279 -65697274 - L1ME LINE L1 -5223 847 589 539 250 46 7 chr11 85086307 85086459 -65697094 - L1ME LINE L1 -5901 169 12 319 320 191 0 chr11 85087045 85087192 -65696361 + MER5A DNA MER1_type 14 188 -1 478 287 134 28 chr11 85087308 85087524 -65696029 - MIR SINE MIR -22 240 2 433 293 8 16 chr11 85087540 85087663 -65695890 + MIR3 SINE MIR 37 158 -50 320 272 193 34 chr11 85087779 85087958 -65695595 + MIR3 SINE MIR 4 206 -56 1084 186 10 0 chr11 85088250 85088444 -65695109 + MER3 DNA MER1_type 14 209 0 1881 158 17 11 chr11 85089452 85089800 -65693753 + L1PA16 LINE L1 5817 6166 0 447 340 126 29 chr11 85090265 85090606 -65692947 + L2 LINE L2 2898 3271 -1 622 313 86 45 chr11 85091200 85091596 -65691957 + L2 LINE L2 2070 2481 -833 210 71 0 0 chr11 85091672 85091700 -65691853 + (T)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr11 85092699 85092722 -65690831 + AT_rich Low_complexity Low_complexity 1 23 0 1950 80 0 29 chr11 85094045 85094319 -65689234 + AluSg SINE Alu 33 298 -12 198 238 134 55 chr11 85094430 85094616 -65688937 + MIR3 SINE MIR 3 192 -70 399 301 96 14 chr11 85094807 85094953 -65688600 - MIR SINE MIR -80 182 25 1367 147 70 39 chr11 85095680 85095774 -65687779 + AluJb SINE Alu 1 91 -221 2288 101 47 49 chr11 85095774 85096139 -65687414 + THE1B LTR MaLR 1 364 0 12057 80 11 1 chr11 85096141 85097703 -65685850 + THE1B-int LTR MaLR 3 1580 0 1772 138 107 58 chr11 85097703 85098050 -65685503 + THE1B LTR MaLR 1 364 0 1367 147 70 39 chr11 85098050 85098210 -65685343 + AluJb SINE Alu 90 267 -45 264 287 0 11 chr11 85098211 85098298 -65685255 + GA-rich Low_complexity Low_complexity 4 89 0 223 274 231 8 chr11 85098513 85098630 -65684923 - MIR SINE MIR -108 154 12 240 149 45 90 chr11 85098866 85098933 -65684620 + MIR SINE MIR 37 100 -162 243 164 0 33 chr11 85099719 85099780 -65683773 - L1MC4 LINE L1 -1344 6698 6640 1450 195 0 19 chr11 85099800 85100118 -65683435 + AluSx SINE Alu 1 312 0 920 158 0 38 chr11 85100134 85100292 -65683261 + FRAM SINE Alu 1 152 -14 574 128 0 0 chr11 85100293 85100371 -65683182 - FRAM SINE Alu -79 97 20 323 362 94 0 chr11 85100505 85100654 -65682899 + L2 LINE L2 3108 3270 -2 2155 88 0 0 chr11 85100782 85101093 -65682460 - AluY SINE Alu 0 311 1 4332 147 24 11 chr11 85101289 85101991 -65681562 + MER50 LTR ERV1 1 711 -23 2066 130 0 0 chr11 85102045 85102346 -65681207 - AluSq SINE Alu -12 301 1 1910 138 16 0 chr11 85102349 85102654 -65680899 - AluSx SINE Alu -2 310 1 1035 163 22 0 chr11 85102695 85102879 -65680674 - AluJo SINE Alu -12 300 113 248 231 0 0 chr11 85102886 85102925 -65680628 + Alu SINE Alu 219 257 -45 1647 130 59 0 chr11 85103267 85103521 -65680032 - AluSc SINE Alu -40 269 1 1696 179 0 7 chr11 85103530 85103821 -65679732 - AluJo SINE Alu -23 289 1 185 320 196 10 chr11 85103936 85104033 -65679520 + L2 LINE L2 3189 3303 -10 336 272 184 19 chr11 85104264 85104422 -65679131 + MIR SINE MIR 33 216 -46 317 239 28 0 chr11 85104458 85104529 -65679024 + L2 LINE L2 3235 3307 -6 1662 190 7 0 chr11 85104745 85105055 -65678498 + AluJo SINE Alu 1 312 0 1946 213 61 14 chr11 85105185 85105626 -65677927 + MLT1C LTR MaLR 6 467 0 339 198 163 99 chr11 85106115 85106287 -65677266 + MIR3 SINE MIR 16 198 -10 1211 148 59 0 chr11 85106308 85106544 -65677009 + L1MB8 LINE L1 5658 5907 -271 389 214 5 38 chr11 85106636 85106747 -65676806 + L1MB8 LINE L1 5911 6024 -160 351 295 145 29 chr11 85106778 85107005 -65676548 + MIR3 SINE MIR 24 262 0 361 313 136 0 chr11 85107626 85107773 -65675780 + MIR SINE MIR 48 214 -48 181 154 0 0 chr11 85107982 85108008 -65675545 - L2 LINE L2 -18 3254 3229 386 244 62 81 chr11 85108016 85108176 -65675377 - MIR SINE MIR -90 172 16 454 318 0 0 chr11 85108252 85108362 -65675191 + MIR3 SINE MIR 51 160 -48 225 237 82 104 chr11 85108372 85108507 -65675046 + MER5A DNA MER1_type 36 167 -22 862 199 0 28 chr11 85108811 85108992 -65674561 - AluJb SINE Alu 0 312 137 1748 114 19 0 chr11 85109101 85109363 -65674190 - L1PA13 LINE L1 0 6163 5897 299 268 169 14 chr11 85109381 85109523 -65674030 + MIR SINE MIR 87 250 -12 337 302 59 10 chr11 85109972 85110104 -65673449 - MIR SINE MIR -56 152 15 2162 104 3 0 chr11 85110706 85111003 -65672550 - AluSq SINE Alu -15 298 1 536 161 0 0 chr11 85111187 85111274 -65672279 + FLAM_C SINE Alu 29 115 -28 304 235 0 15 chr11 85111284 85111352 -65672201 + L1MC4 LINE L1 6640 6706 -1336 936 148 11 40 chr11 85111364 85111540 -65672013 + AluJb SINE Alu 131 301 -11 241 241 316 6 chr11 85112485 85112643 -65670910 + MIR SINE MIR 50 256 -6 934 227 82 5 chr11 85113091 85113298 -65670255 + MER58A DNA MER1_type 1 223 -1 2009 94 14 0 chr11 85113585 85113861 -65669692 + AluY SINE Alu 1 280 -31 214 258 0 48 chr11 85114205 85114267 -65669286 + G-rich Low_complexity Low_complexity 3 61 0 299 317 0 20 chr11 85114306 85114407 -65669146 - MER5B DNA MER1_type -79 99 1 1104 207 7 23 chr11 85114499 85114799 -65668754 + AluSq SINE Alu 7 301 -12 1462 148 0 56 chr11 85115756 85116060 -65667493 - AluSx SINE Alu -19 293 7 718 273 37 22 chr11 85116367 85116638 -65666915 + L1ME1 LINE L1 5779 6053 -113 559 187 0 41 chr11 85116745 85116868 -65666685 + FLAM_C SINE Alu 9 126 -17 267 184 204 51 chr11 85116983 85117081 -65666472 - MER112 DNA MER1_type -147 113 1 339 220 0 0 chr11 85117294 85117369 -65666184 + AluSg/x SINE Alu 211 269 -33 24 53 0 0 chr11 85117430 85117468 -65666085 + AT_rich Low_complexity Low_complexity 1 38 0 553 273 44 22 chr11 85117676 85117738 -65665815 + L1ME LINE L1 5138 5197 -965 1283 183 10 52 chr11 85117738 85118044 -65665509 + AluSx SINE Alu 1 293 -9 553 273 44 22 chr11 85118044 85118319 -65665234 + L1ME LINE L1 5197 5488 -674 1211 217 17 14 chr11 85118332 85118622 -65664931 + AluJb SINE Alu 14 304 -8 1130 188 5 0 chr11 85119103 85119321 -65664232 - AluJb SINE Alu -9 303 85 32 0 0 0 chr11 85120013 85120045 -65663508 + AT_rich Low_complexity Low_complexity 1 32 0 1257 223 25 0 chr11 85120409 85120692 -65662861 - AluJo SINE Alu -12 290 1 309 161 16 16 chr11 85120763 85120825 -65662728 - MIR SINE MIR -62 146 85 31 0 0 0 chr11 85121180 85121211 -65662342 + GC_rich Low_complexity Low_complexity 1 31 0 1303 194 7 7 chr11 85121604 85121888 -65661665 + AluJb SINE Alu 17 300 -12 272 181 208 0 chr11 85121930 85122002 -65661551 - MIR SINE MIR -59 203 117 283 266 180 22 chr11 85122124 85122346 -65661207 - L1ME4a LINE L1 -12 6109 5853 484 255 0 0 chr11 85122656 85122758 -65660795 - FLAM_A SINE Alu -4 138 37 922 269 56 0 chr11 85123751 85123904 -65659649 - AluJb SINE Alu -16 286 110 423 0 0 0 chr11 85123904 85123951 -65659602 + (TGG)n Simple_repeat Simple_repeat 3 49 0 922 269 56 0 chr11 85123951 85124065 -65659488 - AluJb SINE Alu -192 110 4 1809 113 4 4 chr11 85175940 85176188 -65607365 - AluSx SINE Alu -54 258 11 4015 155 11 26 chr11 85176198 85177097 -65606456 - L1PA16 LINE L1 -264 5902 5024 2256 108 20 0 chr11 85177097 85177403 -65606150 - AluSx SINE Alu 0 312 1 4015 155 11 26 chr11 85177403 85177677 -65605876 - L1PA16 LINE L1 -1142 5024 4747 890 193 31 0 chr11 85177778 85177939 -65605614 + MER3 DNA MER1_type 44 209 0 336 193 0 0 chr11 85177955 85178012 -65605541 + MER3 DNA MER1_type 153 209 0 287 220 0 0 chr11 85177969 85178019 -65605534 - MER3 DNA MER1_type -119 90 41 * 1036 193 11 5 chr11 85178078 85178265 -65605288 - MER5A DNA MER1_type -1 188 1 205 214 71 0 chr11 85178567 85178637 -65604916 + (CATAT)n Simple_repeat Simple_repeat 1 75 0 238 344 11 22 chr11 85179320 85179410 -65604143 + MIR SINE MIR 27 115 -93 203 200 0 0 chr11 85180490 85180525 -65603028 + L2 LINE L2 3218 3252 -20 257 353 58 29 chr11 85180658 85180831 -65602722 - MIR SINE MIR -56 206 29 2198 97 10 3 chr11 85181144 85181443 -65602110 - AluSp SINE Alu -12 301 1 205 162 88 73 chr11 85181582 85181650 -65601903 + MIR SINE MIR 194 262 0 269 300 90 0 chr11 85181763 85181863 -65601690 + L2 LINE L2 3160 3268 -4 258 315 45 54 chr11 85182357 85182468 -65601085 + MIR SINE MIR 35 144 -64 244 390 86 0 chr11 85182473 85182578 -65600975 - L2 LINE L2 -14 3299 3186 244 306 35 0 chr11 85182821 85182906 -65600647 - Charlie1 DNA MER1_type -331 2430 2343 1161 151 0 11 chr11 85182943 85183129 -65600424 - AluJo SINE Alu -6 306 123 752 242 136 5 chr11 85184227 85184425 -65599128 - MIR SINE MIR -3 259 36 320 208 0 26 chr11 85184884 85184961 -65598592 + L2 LINE L2 2181 2255 -1059 587 266 111 59 chr11 85185026 85185206 -65598347 + L2 LINE L2 2432 2634 -680 1255 153 146 69 chr11 85185206 85185481 -65598072 + AluJb SINE Alu 1 296 -16 587 266 111 59 chr11 85185481 85185589 -65597964 + L2 LINE L2 2634 2735 -579 755 192 8 8 chr11 85185739 85185869 -65597684 + FLAM_A SINE Alu 1 130 -3 1929 111 14 30 chr11 85185905 85186202 -65597351 + AluSg SINE Alu 3 294 -16 455 221 82 8 chr11 85186202 85186324 -65597229 + L2 LINE L2 3166 3296 -17 553 303 45 14 chr11 85186596 85186817 -65596736 - L1ME LINE L1 -388 5733 5506 235 347 189 0 chr11 85187483 85187679 -65595874 + L2 LINE L2 2554 2786 -528 360 0 0 0 chr11 85187687 85187727 -65595826 + (T)n Simple_repeat Simple_repeat 1 40 0 226 268 18 0 chr11 85188074 85188130 -65595423 + L2 LINE L2 3245 3301 -12 1806 161 7 13 chr11 85189530 85189835 -65593718 - AluJo SINE Alu -9 303 1 7100 124 27 2 chr11 85190392 85192151 -65591402 - L1MA2 LINE L1 -1 6303 4502 1395 158 90 7 chr11 85192258 85192536 -65591017 - Tigger2 DNA MER2_type -138 2580 2280 434 188 0 0 chr11 85192534 85192603 -65590950 - Tigger2 DNA MER2_type -2649 69 1 * 3000 215 93 21 chr11 85192617 85193489 -65590064 + L1ME1 LINE L1 5208 6150 -16 456 273 84 7 chr11 85193683 85193837 -65589716 - MIR SINE MIR -65 197 32 22 35 0 0 chr11 85193981 85194010 -65589543 + AT_rich Low_complexity Low_complexity 1 29 0 216 97 0 0 chr11 85194233 85194264 -65589289 + (A)n Simple_repeat Simple_repeat 1 31 0 209 149 15 134 chr11 85194460 85194527 -65589026 + L3b LINE CR1 1287 1345 -238 2046 120 3 7 chr11 85196241 85196541 -65587012 + AluSq SINE Alu 1 299 -14 540 264 57 38 chr11 85196837 85197049 -65586504 + MLT1L LTR MaLR 25 240 -375 362 277 74 7 chr11 85197055 85197203 -65586350 + MLT1L LTR MaLR 442 599 -16 672 200 0 0 chr11 85197349 85197469 -65586084 + MER5A DNA MER1_type 1 120 -69 2145 127 0 0 chr11 85197469 85197760 -65585793 + AluSx SINE Alu 1 291 -21 2130 123 0 3 chr11 85197862 85198170 -65585383 - AluSx SINE Alu -5 307 1 231 189 54 68 chr11 85198568 85198642 -65584911 + L2 LINE L2 3196 3268 -4 357 204 10 61 chr11 85198740 85198838 -65584715 - LTR33A LTR ERVL -9 514 422 339 316 78 48 chr11 85199481 85199687 -65583866 - L2 LINE L2 -4 3268 3057 235 263 26 0 chr11 85200022 85200098 -65583455 - L1MC4 LINE L1 -139 7903 7826 2054 183 42 36 chr11 85200134 85200613 -65582940 - L1ME2 LINE L1 -10 6154 5671 571 131 142 0 chr11 85200601 85200724 -65582829 - L1MC3 LINE L1 0 7785 7667 * 308 336 39 8 chr11 85201199 85201327 -65582226 - MIR SINE MIR -111 151 20 219 269 258 0 chr11 85202323 85202416 -65581137 - L2 LINE L2 -1 3271 3155 221 307 68 11 chr11 85203442 85203530 -65580023 - L3 LINE CR1 -2 1575 1483 564 284 0 0 chr11 85203617 85203744 -65579809 + MIR3 SINE MIR 30 156 -52 332 319 13 38 chr11 85203744 85203901 -65579652 - MER117 DNA MER1_type -4 193 41 671 282 19 19 chr11 85203967 85204176 -65579377 + MER63A DNA MER1_type 2 210 0 408 291 97 0 chr11 85204316 85204450 -65579103 + MIR SINE MIR 87 233 -29 840 122 22 88 chr11 85204827 85205008 -65578545 - L1 LINE L1 -1789 4357 4189 294 255 71 10 chr11 85206717 85206815 -65576738 + MLT1L LTR MaLR 177 280 -335 240 300 44 33 chr11 85207027 85207117 -65576436 - MIR SINE MIR -165 97 7 2028 149 0 10 chr11 85207376 85207672 -65575881 - AluSx SINE Alu -19 293 1 232 236 0 0 chr11 85209656 85209745 -65573808 - L2 LINE L2 0 3313 3224 191 371 42 30 chr11 85210672 85210839 -65572714 + L2 LINE L2 2925 3093 -179 2418 73 3 0 chr11 85210851 85211154 -65572399 - AluY SINE Alu -7 304 1 201 250 96 0 chr11 85211362 85211414 -65572139 - MIR SINE MIR -108 154 98 399 121 22 33 chr11 85211815 85211906 -65571647 + GA-rich Low_complexity Low_complexity 2 91 0 1313 173 65 7 chr11 85212105 85212411 -65571142 - MER33 DNA MER1_type 0 324 1 304 317 48 0 chr11 85212496 85212641 -65570912 + HAL1 LINE L1 1631 1782 -725 1595 168 14 24 chr11 85213441 85213738 -65569815 + AluJb SINE Alu 1 294 -18 22 35 0 0 chr11 85214566 85214595 -65568958 + AT_rich Low_complexity Low_complexity 1 29 0 411 298 112 25 chr11 85214857 85215018 -65568535 - MIR SINE MIR -86 176 2 225 0 0 0 chr11 85215021 85215046 -65568507 + (GAGAA)n Simple_repeat Simple_repeat 1 25 0 315 0 0 0 chr11 85215121 85215156 -65568397 + (TA)n Simple_repeat Simple_repeat 1 35 0 241 328 168 8 chr11 85215830 85215961 -65567592 + MIR SINE MIR 2 153 -109 899 172 125 4 chr11 85216038 85216270 -65567283 + L1MC4a LINE L1 4958 5217 -929 1066 160 0 17 chr11 85216694 85216869 -65566684 + FRAM SINE Alu 1 172 -4 2245 115 0 0 chr11 85217066 85217361 -65566192 + AluSx SINE Alu 12 306 -6 363 260 40 76 chr11 85217738 85217900 -65565653 + L1MEd LINE L1 3 156 -5963 2210 134 52 31 chr11 85217900 85218347 -65565206 + L1MB3 LINE L1 5728 6183 0 363 260 40 76 chr11 85218347 85218407 -65565146 + L1MEd LINE L1 156 217 -5902 6780 39 4 32 chr11 85218541 85219660 -65563893 + L1PA4 LINE L1 5104 6155 0 796 306 99 30 chr11 85219661 85220298 -65563255 + L1MEd LINE L1 447 1127 -4992 451 287 95 31 chr11 85220402 85220828 -65562725 + L1MEd LINE L1 1112 1731 -861 909 233 125 77 chr11 85220969 85221449 -65562104 + MLT1D LTR MaLR 1 503 -2 519 186 113 48 chr11 85221451 85221575 -65561978 + FLAM_C SINE Alu 1 132 -1 2054 136 0 3 chr11 85221741 85222058 -65561495 + AluSx SINE Alu 1 312 0 968 260 142 39 chr11 85222684 85223254 -65560299 + L1MC4a LINE L1 5254 5882 -1926 358 288 75 51 chr11 85223458 85223786 -65559767 + L1MEd LINE L1 1879 2169 -3960 711 282 49 24 chr11 85223800 85224225 -65559328 + L1MEd LINE L1 2126 2561 -3568 367 279 27 75 chr11 85224439 85224586 -65558967 + L2 LINE L2 3125 3264 -8 348 368 75 0 chr11 85224627 85224733 -65558820 - L2 LINE L2 -16 3256 3143 1819 189 7 3 chr11 85224747 85225049 -65558504 - AluJb SINE Alu -9 303 1 210 209 23 0 chr11 85225148 85225191 -65558362 - L2 LINE L2 -2 3311 3268 475 191 0 0 chr11 85225386 85225470 -65558083 - AluJ/FLAM SINE Alu -228 84 1 326 271 126 9 chr11 85225546 85225760 -65557793 + MER112 DNA MER1_type 18 256 -4 22 0 0 0 chr11 85226057 85226079 -65557474 + AT_rich Low_complexity Low_complexity 1 22 0 678 101 0 0 chr11 85226152 85226251 -65557302 - L1PB1 LINE L1 0 6151 6053 238 368 38 0 chr11 85226342 85226448 -65557105 - MIR SINE MIR -71 137 28 231 236 56 52 chr11 85227080 85227183 -65556370 + MIR SINE MIR 37 138 -70 2823 10 0 0 chr11 85228188 85228496 -65555057 + AluYa5 SINE Alu 1 308 -3 378 61 0 0 chr11 85228909 85228958 -65554595 + (TG)n Simple_repeat Simple_repeat 2 50 0 193 383 17 0 chr11 85229842 85229962 -65553591 + L3 LINE CR1 1108 1229 -348 541 220 0 0 chr11 85230013 85230113 -65553440 + FRAM SINE Alu 41 140 -36 198 91 0 0 chr11 85230117 85230150 -65553403 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 232 274 20 0 chr11 85231253 85231304 -65552249 - L2 LINE L2 -36 3236 3185 1748 145 3 47 chr11 85233419 85233716 -65549837 - AluJb SINE Alu -28 284 1 2153 130 3 0 chr11 85233887 85234188 -65549365 - AluSp SINE Alu -11 302 1 720 43 0 0 chr11 85234718 85234810 -65548743 + AluYa5/8 SINE Alu 218 309 -2 340 276 77 51 chr11 85234995 85235151 -65548402 - L2 LINE L2 -177 3095 2936 284 270 115 7 chr11 85235344 85235492 -65548061 - MER103 DNA DNA -1 165 2 297 316 41 10 chr11 85235686 85235784 -65547769 + MIR SINE MIR 32 132 -76 517 264 88 0 chr11 85235825 85235973 -65547580 - MIR SINE MIR -43 219 59 2895 118 32 26 chr11 85236065 85236529 -65547024 - LTR24 LTR ERV1 0 467 1 2273 65 11 4 chr11 85236691 85236967 -65546586 + AluSc SINE Alu 16 293 -16 1529 265 98 14 chr11 85237026 85237589 -65545964 - HsTC2a DNA Tc2 -134 610 1 275 250 146 40 chr11 85238103 85238303 -65545250 + MLT1K LTR MaLR 1 236 -352 578 216 40 8 chr11 85238394 85238519 -65545034 + FLAM_A SINE Alu 4 132 -1 184 240 20 90 chr11 85238611 85238711 -65544842 + MIR SINE MIR 143 235 -27 229 274 168 0 chr11 85239446 85239541 -65544012 - MIR SINE MIR -70 192 82 861 164 19 67 chr11 85239653 85239861 -65543692 + MLT1A1 LTR MaLR 1 198 -167 500 302 94 25 chr11 85240274 85240509 -65543044 + MIR SINE MIR 12 262 0 378 335 66 54 chr11 85240622 85240864 -65542689 - L2 LINE L2 -465 2849 2605 * 448 264 22 108 chr11 85240859 85241049 -65542504 + MIR SINE MIR 18 182 -80 264 30 0 0 chr11 85241049 85241082 -65542471 + (TG)n Simple_repeat Simple_repeat 2 34 0 448 264 22 108 chr11 85241082 85241155 -65542398 + MIR SINE MIR 182 260 -2 764 314 20 51 chr11 85241371 85241721 -65541832 - LTR16A LTR ERVL -8 442 104 395 225 29 104 chr11 85241871 85242044 -65541509 + MER20 DNA MER1_type 57 216 -3 1008 178 231 12 chr11 85242406 85242653 -65540900 - AluY SINE Alu 0 301 1 486 189 17 120 chr11 85243015 85243136 -65540417 - L1ME LINE L1 -394 6032 5933 1639 158 62 11 chr11 85243136 85243409 -65540144 - AluJo SINE Alu -17 295 9 486 189 17 120 chr11 85243409 85243462 -65540091 - L1ME LINE L1 -493 5933 5876 230 140 200 0 chr11 85243474 85243524 -65540029 - L1 LINE L1 -1675 4731 4672 308 208 0 148 chr11 85243526 85243627 -65539926 + MER2 DNA MER2_type 2 87 -258 1405 210 60 48 chr11 85243661 85244428 -65539125 - L1ME LINE L1 -664 5838 5065 2417 242 66 67 chr11 85244439 85244536 -65539017 - L1MDb LINE L1 -4246 2160 2064 1858 185 80 75 chr11 85244536 85245039 -65538514 - MLT1D LTR MaLR 0 505 1 2417 242 66 67 chr11 85245039 85245803 -65537750 - L1MDb LINE L1 -4342 2064 1343 2247 129 0 0 chr11 85245803 85246114 -65537439 - AluSx SINE Alu -1 311 1 2417 242 66 67 chr11 85246114 85246682 -65536871 - L1MDb LINE L1 -5063 1343 776 23 0 0 0 chr11 85246990 85247013 -65536540 + AT_rich Low_complexity Low_complexity 1 23 0 2362 80 0 3 chr11 85247013 85247302 -65536251 + AluSx SINE Alu 1 288 -24 15728 127 15 0 chr11 85247772 85250938 -65532615 - L1PA8 LINE L1 0 6172 2974 258 257 43 0 chr11 85251020 85251090 -65532463 - MER94 DNA DNA -57 77 5 2040 149 0 7 chr11 85252049 85252351 -65531202 + AluSx SINE Alu 1 300 -12 1832 154 38 0 chr11 85252615 85252908 -65530645 + AluSx SINE Alu 1 304 -8 1863 169 0 3 chr11 85252970 85253266 -65530287 + AluJo SINE Alu 1 295 -17 1415 145 0 26 chr11 85253642 85253870 -65529683 - AluJb SINE Alu -12 300 79 454 322 13 0 chr11 85254051 85254203 -65529350 - MIR SINE MIR -1 261 108 27 49 0 0 chr11 85254632 85254673 -65528880 + AT_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr11 85254787 85254813 -65528740 + AT_rich Low_complexity Low_complexity 1 26 0 184 109 22 22 chr11 85254829 85254875 -65528678 + (TA)n Simple_repeat Simple_repeat 1 46 0 858 260 131 67 chr11 85255049 85255181 -65528372 - L2 LINE L2 -593 2721 2599 1739 166 34 91 chr11 85255181 85255620 -65527933 - MLT2D LTR ERVL 0 414 1 858 260 131 67 chr11 85255620 85255860 -65527693 - L2 LINE L2 -715 2599 2325 2528 51 0 13 chr11 85257248 85257559 -65525994 + AluY SINE Alu 1 307 -4 493 254 202 41 chr11 85258159 85258521 -65525032 - L1ME4a LINE L1 -4 6117 5698 2026 140 3 13 chr11 85258638 85258946 -65524607 + AluSx SINE Alu 1 305 -7 587 224 58 6 chr11 85259054 85259228 -65524325 + L1ME4a LINE L1 5549 5731 -390 329 222 111 28 chr11 85259270 85259414 -65524139 + L1ME4a LINE L1 5962 6117 -4 224 235 22 44 chr11 85259464 85259543 -65524010 + (TTTA)n Simple_repeat Simple_repeat 2 81 -53 2085 124 0 29 chr11 85259543 85259850 -65523703 + AluSx SINE Alu 1 298 -14 224 235 22 44 chr11 85259850 85259872 -65523681 + (TTTA)n Simple_repeat Simple_repeat 81 102 -32 1494 207 3 37 chr11 85259872 85260171 -65523382 + AluJo SINE Alu 1 289 -23 224 235 22 44 chr11 85260171 85260204 -65523349 + (TTTA)n Simple_repeat Simple_repeat 102 134 0 201 382 22 0 chr11 85260797 85260886 -65522667 - L3 LINE CR1 -95 1482 1392 4942 142 38 30 chr11 85260886 85261397 -65522156 + L1MA7 LINE L1 4981 5487 -804 1989 149 0 25 chr11 85261397 85261712 -65521841 + AluJo SINE Alu 6 312 0 4942 142 38 30 chr11 85261712 85262497 -65521056 + L1MA7 LINE L1 5487 6287 -4 353 333 48 0 chr11 85262551 85262656 -65520897 + L2 LINE L2 3162 3271 -1 276 333 49 12 chr11 85262758 85262839 -65520714 + MIR SINE MIR 22 105 -103 * 285 329 58 13 chr11 85262837 85262992 -65520561 - L2 LINE L2 -2 3311 3150 275 188 200 0 chr11 85263023 85263103 -65520450 + MIR SINE MIR 104 199 -63 1371 265 50 105 chr11 85263111 85263931 -65519622 + L1MEd LINE L1 17 791 -5328 1064 131 0 12 chr11 85264114 85264274 -65519279 - FRAM SINE Alu -19 157 1 206 300 0 67 chr11 85265340 85265379 -65518174 - MIR3 SINE MIR -2 206 166 3319 16 0 0 chr11 85265379 85265759 -65517794 + L1PA2 LINE L1 5776 6155 0 206 300 0 67 chr11 85265759 85265809 -65517744 - MIR3 SINE MIR -42 166 123 322 280 119 8 chr11 85265981 85266099 -65517454 + MIR SINE MIR 12 142 -120 198 0 0 0 chr11 85266390 85266412 -65517141 + (A)n Simple_repeat Simple_repeat 1 22 0 331 252 164 28 chr11 85266458 85266803 -65516750 + L1MC4a LINE L1 5518 5808 -313 1119 288 64 59 chr11 85267104 85267653 -65515900 + L2 LINE L2 2763 3313 0 22 35 0 0 chr11 85268233 85268262 -65515291 + AT_rich Low_complexity Low_complexity 1 29 0 842 154 0 22 chr11 85268363 85268499 -65515054 + AluJo SINE Alu 1 133 -169 2314 79 14 0 chr11 85268591 85268883 -65514670 + AluY SINE Alu 1 296 -15 267 103 0 0 chr11 85268945 85268984 -65514569 + (T)n Simple_repeat Simple_repeat 1 39 0 563 225 8 8 chr11 85269108 85269228 -65514325 - FLAM_A SINE Alu -13 120 1 762 241 25 0 chr11 85269287 85269449 -65514104 + AluJo SINE Alu 137 302 -10 457 191 0 11 chr11 85269450 85269544 -65514009 - L1MA9 LINE L1 -38 6274 6182 591 206 15 0 chr11 85269548 85269679 -65513874 - L1MA9 LINE L1 -231 6081 5949 26 30 0 0 chr11 85269692 85269725 -65513828 + AT_rich Low_complexity Low_complexity 1 33 0 1560 178 40 10 chr11 85269725 85270028 -65513525 - AluJb SINE Alu 0 312 1 293 311 98 30 chr11 85270303 85270435 -65513118 + L2 LINE L2 3128 3268 -4 2122 102 0 7 chr11 85270525 85270809 -65512744 + AluSg SINE Alu 12 293 -17 309 89 0 0 chr11 85271655 85271700 -65511853 + (TTTTG)n Simple_repeat Simple_repeat 5 49 0 4854 94 124 124 chr11 85271822 85273341 -65510212 + pTR5 LTR ERV1 738 2438 0 2200 111 0 57 chr11 85273560 85273892 -65509661 - AluSq SINE Alu 0 313 1 1534 209 17 3 chr11 85273936 85274223 -65509330 + AluJo SINE Alu 1 291 -21 22 99 0 0 chr11 85274244 85274315 -65509238 + AT_rich Low_complexity Low_complexity 1 71 0 277 319 101 17 chr11 85274609 85274728 -65508825 - MIR SINE MIR -116 146 18 1774 146 10 36 chr11 85275314 85275615 -65507938 - AluSx SINE Alu -3 309 17 252 0 0 0 chr11 85275665 85275693 -65507860 + (T)n Simple_repeat Simple_repeat 1 28 0 1980 340 88 17 chr11 85275706 85276143 -65507410 + L2 LINE L2 1820 2225 -1088 1900 133 11 58 chr11 85276143 85276503 -65507050 + MER2 DNA MER2_type 1 343 -1 1980 340 88 17 chr11 85276503 85276889 -65506664 + L2 LINE L2 2225 2582 -731 756 178 0 22 chr11 85276889 85277024 -65506529 + FLAM_C SINE Alu 1 132 -1 1980 340 88 17 chr11 85277024 85277362 -65506191 + L2 LINE L2 2582 3067 -246 1560 111 48 159 chr11 85277531 85277726 -65505827 - THE1A LTR MaLR -4 351 136 2293 84 3 0 chr11 85277726 85278010 -65505543 + AluSp SINE Alu 1 285 -28 182 62 31 0 chr11 85278013 85278045 -65505508 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1560 111 48 159 chr11 85278045 85278086 -65505467 - THE1A LTR MaLR -221 134 90 1970 110 15 0 chr11 85278086 85278386 -65505167 + AluSx SINE Alu 6 309 0 1560 111 48 159 chr11 85278386 85278538 -65505015 - THE1A LTR MaLR -265 90 1 214 354 85 0 chr11 85278541 85278623 -65504930 + L2 LINE L2 3184 3272 0 531 322 62 29 chr11 85278737 85278979 -65504574 + MIR SINE MIR 2 251 -11 1851 171 71 8 chr11 85279025 85279418 -65504135 - L1MA5 LINE L1 0 6300 5883 390 21 0 0 chr11 85279451 85279498 -65504055 + (TG)n Simple_repeat Simple_repeat 2 48 0 481 274 40 39 chr11 85280158 85280321 -65503232 + MIR3 SINE MIR 35 199 -9 224 344 0 32 chr11 85281434 85281527 -65502026 - MIR SINE MIR -113 149 60 272 250 0 17 chr11 85281608 85281668 -65501885 + MIR SINE MIR 17 75 -133 637 231 45 5 chr11 85281708 85281907 -65501646 + L1ME3A LINE L1 5950 6156 -14 1907 181 29 34 chr11 85282353 85282379 -65501174 - MSTB LTR MaLR -19 407 382 2189 103 10 3 chr11 85282379 85282671 -65500882 + AluSg SINE Alu 1 294 -16 1907 181 29 34 chr11 85282671 85283053 -65500500 - MSTB LTR MaLR -44 382 1 1733 193 0 3 chr11 85284587 85284887 -65498666 + AluJb SINE Alu 1 299 -13 2207 92 3 31 chr11 85284889 85285206 -65498347 + AluSc SINE Alu 1 308 -1 2225 108 3 22 chr11 85286315 85286629 -65496924 + AluSx SINE Alu 1 308 -4 473 270 144 35 chr11 85287164 85287422 -65496131 + MLT1I LTR MaLR 64 354 -55 912 199 27 54 chr11 85287422 85287643 -65495910 + MER20 DNA MER1_type 2 216 -3 473 270 144 35 chr11 85287643 85287706 -65495847 + MLT1I LTR MaLR 354 409 0 22 0 0 0 chr11 85287796 85287818 -65495735 + AT_rich Low_complexity Low_complexity 1 22 0 2315 66 0 7 chr11 85287859 85288146 -65495407 + AluY SINE Alu 1 285 -26 214 311 52 52 chr11 85288397 85288532 -65495021 + L2 LINE L2 2652 2786 -528 327 25 0 0 chr11 85288540 85288580 -65494973 + (T)n Simple_repeat Simple_repeat 1 40 0 230 290 11 65 chr11 85288890 85288983 -65494570 + L2 LINE L2 3214 3301 -12 582 271 23 59 chr11 85289747 85289816 -65493737 - MIR SINE MIR 0 262 192 2393 84 0 0 chr11 85289816 85290112 -65493441 + AluSq SINE Alu 1 296 -17 582 271 23 59 chr11 85290112 85290263 -65493290 - MIR SINE MIR -70 192 50 2250 100 3 0 chr11 85290285 85290576 -65492977 + AluSx SINE Alu 1 292 -20 22 56 0 0 chr11 85290789 85290825 -65492728 + AT_rich Low_complexity Low_complexity 1 36 0 481 280 140 0 chr11 85291016 85291166 -65492387 + MIR SINE MIR 86 256 -6 2176 107 0 3 chr11 85291314 85291604 -65491949 + AluSq SINE Alu 5 293 -20 365 94 0 0 chr11 85291615 85291668 -65491885 + Alu SINE Alu 242 294 -7 2208 123 0 0 chr11 85292645 85292955 -65490598 - AluSg SINE Alu 0 310 1 200 288 68 0 chr11 85293313 85293372 -65490181 - L2 LINE L2 -61 3211 3149 2255 101 3 0 chr11 85294830 85295136 -65488417 + AluSx SINE Alu 1 307 -5 463 296 142 60 chr11 85295582 85295815 -65487738 - L3 LINE CR1 -5 1572 1321 468 305 187 8 chr11 85295896 85296158 -65487395 - L2 LINE L2 0 3313 3005 384 343 35 27 chr11 85296373 85296575 -65486978 + MIR3 SINE MIR 1 204 -4 231 286 32 0 chr11 85296833 85296896 -65486657 - Tigger8 DNA MER2_type -255 411 347 530 288 18 6 chr11 85296946 85297109 -65486444 - Tigger8 DNA MER2_type -463 203 39 2180 120 3 3 chr11 85297991 85298299 -65485254 + AluSx SINE Alu 1 308 -4 1846 81 0 67 chr11 85298838 85299121 -65484432 + AluY SINE Alu 38 301 -10 1991 145 0 0 chr11 85299888 85300202 -65483351 - AluJb SINE Alu 0 314 1 1549 184 62 0 chr11 85300205 85300477 -65483076 - AluJb SINE Alu -23 289 1 276 250 29 0 chr11 85300486 85300554 -65482999 - L3 LINE CR1 -166 1411 1342 396 244 112 2 chr11 85301146 85301295 -65482258 + MIR SINE MIR 20 180 -62 391 283 38 0 chr11 85302579 85302685 -65480868 + L2 LINE L2 3179 3288 -25 371 214 60 0 chr11 85303013 85303097 -65480456 + L2 LINE L2 3184 3272 0 258 253 22 22 chr11 85305512 85305603 -65477950 - MER63B DNA MER1_type -24 411 321 1600 160 36 2 chr11 85305611 85306226 -65477327 + L1MB7 LINE L1 5491 6163 -21 1514 198 45 15 chr11 85306226 85306559 -65476994 - MER63B DNA MER1_type -93 343 1 207 0 0 0 chr11 85307030 85307053 -65476500 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2659 65 17 3 chr11 85307097 85307450 -65476103 - L1PA10 LINE L1 0 6168 5811 639 143 22 110 chr11 85307549 85307731 -65475822 + L1MA8 LINE L1 6125 6290 -1 307 271 15 113 chr11 85307851 85307936 -65475617 - L2 LINE L2 -1 3271 3202 832 161 0 0 chr11 85307936 85308060 -65475493 + FLAM_C SINE Alu 1 124 -9 307 271 15 113 chr11 85308060 85308107 -65475446 - L2 LINE L2 -70 3202 3152 2330 116 0 0 chr11 85308504 85308815 -65474738 - AluSq SINE Alu -2 311 1 2359 56 0 14 chr11 85310047 85310334 -65473219 + AluY SINE Alu 14 296 -15 22 80 0 0 chr11 85312202 85312252 -65471301 + GC_rich Low_complexity Low_complexity 1 50 0 42 82 0 0 chr11 85312316 85312414 -65471139 + GC_rich Low_complexity Low_complexity 1 98 0 39 102 0 0 chr11 85312592 85312729 -65470824 + GC_rich Low_complexity Low_complexity 1 137 0 21 0 0 0 chr11 85313538 85313559 -65469994 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 85314278 85314300 -65469253 + AT_rich Low_complexity Low_complexity 1 22 0 2146 124 0 3 chr11 85315167 85315465 -65468088 + AluSx SINE Alu 3 299 -13 195 250 54 65 chr11 85315993 85316085 -65467468 - L2 LINE L2 -1 3312 3222 216 309 83 79 chr11 85316098 85316222 -65467331 + L2 LINE L2 1368 1490 -1824 2255 109 6 13 chr11 85316222 85316535 -65467018 - AluSq SINE Alu -2 311 1 216 309 83 79 chr11 85316535 85316688 -65466865 + L2 LINE L2 1490 1646 -1668 1002 331 102 13 chr11 85316738 85317445 -65466108 + L2 LINE L2 1812 2581 -733 213 195 0 0 chr11 85317463 85317504 -65466049 - MIR SINE MIR -12 250 210 2247 170 56 13 chr11 85317601 85318065 -65465488 - L1MD1 LINE L1 -5 6631 6148 647 104 5 0 chr11 85318066 85318180 -65465373 - L1MD1 LINE L1 -742 5826 5710 599 79 180 0 chr11 85318186 85318275 -65465278 - AluSp/q SINE Alu -18 295 191 261 0 0 0 chr11 85318276 85318305 -65465248 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2245 79 4 4 chr11 85318308 85318586 -65464967 - AluSc SINE Alu -31 278 1 1509 245 72 21 chr11 85318597 85319123 -65464430 - L1MD1 LINE L1 -1098 5442 4890 1534 203 4 14 chr11 85319189 85319470 -65464083 - AluJo SINE Alu -34 278 1 3630 203 130 50 chr11 85319470 85319816 -65463737 - L1MD1 LINE L1 -2544 3996 3679 2083 151 0 0 chr11 85319816 85320115 -65463438 - AluSx SINE Alu -13 299 1 3630 203 130 50 chr11 85320115 85320726 -65462827 - L1MD1 LINE L1 -2861 3679 3119 2310 104 3 3 chr11 85320726 85321034 -65462519 - AluSp SINE Alu -5 308 1 3630 203 130 50 chr11 85321034 85321338 -65462215 - L1MD1 LINE L1 -3421 3119 2841 2434 121 111 8 chr11 85321338 85321726 -65461827 - MSTA LTR MaLR 0 428 1 3630 203 130 50 chr11 85321726 85322568 -65460985 - L1MD1 LINE L1 -3699 2841 1711 498 27 18 118 chr11 85322568 85322678 -65460875 + (TTTC)n Simple_repeat Simple_repeat 3 101 0 2185 123 0 7 chr11 85322680 85322988 -65460565 - AluSq SINE Alu -7 306 1 3458 215 54 21 chr11 85322994 85323671 -65459882 - L1MD1 LINE L1 -4785 1755 1102 1995 144 0 0 chr11 85323671 85323955 -65459598 + AluSx SINE Alu 13 296 -16 3458 215 54 21 chr11 85323955 85324740 -65458813 - L1MD1 LINE L1 -5438 1102 31 289 222 162 8 chr11 85324821 85324938 -65458615 - MIR SINE MIR -108 154 20 2504 78 0 3 chr11 85324938 85325245 -65458308 + AluY SINE Alu 1 306 -5 4046 160 52 36 chr11 85325300 85325789 -65457764 - L1MA4 LINE L1 0 6300 5791 1681 178 14 14 chr11 85325789 85326076 -65457477 - AluJb SINE Alu -25 287 1 4046 160 52 36 chr11 85326076 85326398 -65457155 - L1MA4 LINE L1 -509 5791 5476 2323 184 2 0 chr11 85326457 85326882 -65456671 - L1MA4 LINE L1 -863 5283 4858 1805 163 23 35 chr11 85327140 85327484 -65456069 - MLT1A1 LTR MaLR 0 365 26 2051 92 16 82 chr11 85327586 85327903 -65455650 + AluSq SINE Alu 1 296 -17 362 175 0 0 chr11 85328550 85328613 -65454940 + L1MB3 LINE L1 5728 5790 -361 240 180 0 49 chr11 85328616 85328677 -65454876 + (CATATA)n Simple_repeat Simple_repeat 1 58 0 573 156 0 55 chr11 85328680 85328789 -65454764 + L1MB3 LINE L1 5787 5889 -294 378 0 0 0 chr11 85328789 85328831 -65454722 + (CA)n Simple_repeat Simple_repeat 2 43 0 2299 126 16 18 chr11 85328831 85329212 -65454341 + L1MB3 LINE L1 5797 6176 -7 2039 146 10 7 chr11 85329409 85329717 -65453836 - AluSx SINE Alu -3 309 1 1398 188 24 93 chr11 85331222 85331631 -65451922 - L1MC5 LINE L1 -912 7049 6669 300 199 223 42 chr11 85331751 85331917 -65451636 - L1MC5 LINE L1 -35 7926 7731 189 0 0 0 chr11 85332295 85332316 -65451237 + (TG)n Simple_repeat Simple_repeat 2 22 0 680 170 27 0 chr11 85332317 85332429 -65451124 - FAM SINE Alu -69 116 2 2050 122 37 0 chr11 85333441 85333735 -65449818 + AluSp SINE Alu 1 305 -8 22 0 0 0 chr11 85333851 85333873 -65449680 + AT_rich Low_complexity Low_complexity 1 22 0 427 313 23 0 chr11 85334459 85334587 -65448966 + MIR SINE MIR 20 150 -112 1992 135 7 0 chr11 85334877 85335166 -65448387 - AluSx SINE Alu -21 291 1 2281 117 0 0 chr11 85336022 85336331 -65447222 - AluY SINE Alu -2 309 1 425 227 162 22 chr11 85336694 85336938 -65446615 - L1ME LINE L1 -464 5657 5371 2238 118 7 3 chr11 85338072 85338377 -65445176 - AluSg SINE Alu -2 308 3 2495 222 32 15 chr11 85338480 85339016 -65444537 - MLT1G LTR MaLR -34 556 12 1219 173 18 9 chr11 85339016 85339241 -65444312 - AluJb SINE Alu -1 311 85 281 330 0 11 chr11 85339400 85339488 -65444065 + L2 LINE L2 3210 3296 -17 1353 167 0 14 chr11 85339776 85339998 -65443555 - AluSq SINE Alu -58 255 37 809 134 60 7 chr11 85340580 85340729 -65442824 - L1MB7 LINE L1 0 6184 6028 2308 93 10 3 chr11 85340731 85341032 -65442521 + AluSp SINE Alu 1 303 -10 1906 149 3 7 chr11 85341711 85342000 -65441553 + AluJo SINE Alu 2 289 -23 1555 163 60 14 chr11 85342009 85342291 -65441262 + AluSx SINE Alu 1 295 -17 356 332 158 0 chr11 85342326 85342516 -65441037 - MIR SINE MIR -16 246 27 322 322 11 0 chr11 85342540 85342636 -65440917 + MIR SINE MIR 48 153 -55 20288 22 2 0 chr11 85392686 85395052 -65388501 - L1P LINE L1 -1528 4618 2247 3294 237 86 78 chr11 85395202 85396468 -65387085 - L1M2b LINE L1 -5933 1276 1 233 135 39 19 chr11 85396493 85396545 -65387008 + L1M4 LINE L1 4681 4733 -1413 * 296 233 48 39 chr11 85396542 85396645 -65386908 - L1MB8 LINE L1 -1 6177 6074 * 921 186 50 27 chr11 85396627 85396847 -65386706 + L1M4 LINE L1 4703 4927 -1219 721 200 0 69 chr11 85396886 85397061 -65386492 + L1 LINE L1 16 178 -7387 838 164 8 0 chr11 85397062 85397196 -65386357 + FLAM_C SINE Alu 5 139 -4 305 216 68 45 chr11 85397708 85397741 -65385812 + L1MC4 LINE L1 6447 6478 -1564 4701 154 61 11 chr11 85397741 85398564 -65384989 + MER6 DNA MER2_type 1 864 -1 305 216 68 45 chr11 85398564 85398618 -65384935 + L1MC4 LINE L1 6478 6536 -1506 1302 114 64 21 chr11 85398618 85398854 -65384699 + Tigger2 DNA MER2_type 2 247 -2471 618 185 0 0 chr11 85398954 85399046 -65384507 - AluJ/FLAM SINE Alu -219 93 2 2184 184 11 22 chr11 85399047 85399492 -65384061 + L1 LINE L1 5043 5482 -2083 9393 121 59 53 chr11 85399492 85401178 -65382375 + pTR5 LTR ERV1 743 2438 0 3232 178 44 1 chr11 85401181 85401843 -65381710 + L1 LINE L1 5479 6168 -1397 985 142 7 0 chr11 85401845 85401993 -65381560 + FRAM SINE Alu 26 174 -2 867 207 106 42 chr11 85402053 85402478 -65381075 - L1MDa LINE L1 -2652 3888 3437 * 2967 249 91 18 chr11 85402468 85402942 -65380611 - L1MDa LINE L1 -3348 3192 2754 2214 125 0 0 chr11 85402942 85403247 -65380306 - AluSg SINE Alu -5 305 1 2967 249 91 18 chr11 85403247 85404656 -65378897 - L1MDa LINE L1 -3786 2754 1132 180 0 0 0 chr11 85404730 85404750 -65378803 + (T)n Simple_repeat Simple_repeat 1 20 0 607 248 66 12 chr11 85405698 85405940 -65377613 + L1MC5 LINE L1 7276 7530 -431 270 216 103 31 chr11 85405942 85406039 -65377514 + MIR SINE MIR 136 239 -23 606 298 98 9 chr11 85406796 85407021 -65376532 + MIR SINE MIR 12 256 -6 920 173 54 0 chr11 85408357 85408525 -65375028 - MER45A DNA AcHobo 0 178 2 261 204 78 48 chr11 85408744 85408847 -65374706 + MIR SINE MIR 106 211 -51 260 283 174 22 chr11 85409119 85409211 -65374342 - L2 LINE L2 -2 3270 3165 825 320 38 15 chr11 85409387 85409787 -65373766 + LTR16C LTR ERVL 72 480 -11 209 229 21 0 chr11 85411184 85411232 -65372321 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 491 258 72 0 chr11 85412728 85412895 -65370658 - L1MB7 LINE L1 -238 5883 5705 1560 189 39 16 chr11 85412909 85413215 -65370338 + L1MB7 LINE L1 5862 6174 -10 285 214 31 113 chr11 85413176 85413304 -65370249 - L1ME4a LINE L1 -390 5731 5617 * 1684 164 3 20 chr11 85413304 85413608 -65369945 - AluJo SINE Alu -12 300 2 285 214 31 113 chr11 85413608 85413638 -65369915 - L1ME4a LINE L1 -504 5617 5586 21 57 0 0 chr11 85413709 85413744 -65369809 + AT_rich Low_complexity Low_complexity 1 35 0 37633 24 20 87 chr11 85413827 85416810 -65366743 - L1HS LINE L1 0 6155 3683 654 229 0 8 chr11 85416810 85416932 -65366621 - FLAM_C SINE Alu -21 122 2 37633 24 20 87 chr11 85416932 85420030 -65363523 - L1HS LINE L1 -2472 3683 379 1879 124 3 36 chr11 85422397 85422566 -65360987 - AluSx SINE Alu -16 296 140 2142 109 3 0 chr11 85422566 85422868 -65360685 - AluSp SINE Alu -10 303 1 1879 124 3 36 chr11 85422868 85423004 -65360549 - AluSx SINE Alu -172 140 1 375 226 98 10 chr11 85427029 85427131 -65356422 - L2 LINE L2 -1 3312 3202 278 361 41 0 chr11 85427338 85427408 -65356145 + L2 LINE L2 3153 3226 -46 669 264 140 17 chr11 85427408 85427643 -65355910 + MIR SINE MIR 1 258 -4 287 330 96 0 chr11 85428149 85428264 -65355289 - MIR SINE MIR -58 150 25 326 322 167 11 chr11 85428685 85428859 -65354694 - L2 LINE L2 -5 3267 3067 454 296 91 16 chr11 85428881 85429124 -65354429 - L2 LINE L2 -500 2814 2554 529 255 54 0 chr11 85429989 85430138 -65353415 + MER103 DNA DNA 1 157 -9 474 191 22 0 chr11 85430418 85430507 -65353046 - MIR3 SINE MIR -26 182 92 256 173 19 19 chr11 85430550 85430602 -65352951 - L2 LINE L2 0 3313 3262 777 261 46 29 chr11 85430959 85431197 -65352356 - MIR SINE MIR 0 262 21 212 343 15 0 chr11 85431307 85431374 -65352179 + MIR SINE MIR 195 262 0 1196 190 23 0 chr11 85431400 85431616 -65351937 + MER58A DNA MER1_type 1 221 -3 405 310 95 0 chr11 85431814 85431930 -65351623 - MIR SINE MIR -117 145 19 208 366 154 16 chr11 85433155 85433278 -65350275 + L2 LINE L2 3115 3254 -18 552 303 33 9 chr11 85433762 85433973 -65349580 + MIR SINE MIR 18 233 -29 391 305 105 42 chr11 85434441 85434631 -65348922 + L3 LINE CR1 1366 1567 -10 445 319 17 0 chr11 85434760 85434879 -65348674 + MIR SINE MIR 33 153 -55 524 323 56 6 chr11 85436555 85436716 -65346837 - L2 LINE L2 0 3272 3104 226 306 8 48 chr11 85437188 85437312 -65346241 - L2 LINE L2 -1 3271 3153 366 273 7 87 chr11 85437517 85437667 -65345886 - MIR3 SINE MIR -16 192 55 232 252 76 76 chr11 85437852 85437971 -65345582 - MIR SINE MIR -78 184 66 1671 134 8 4 chr11 85438210 85438472 -65345081 + AluSx SINE Alu 35 297 -15 196 258 151 11 chr11 85438772 85438865 -65344688 - MIR SINE MIR -59 203 98 * 283 231 77 13 chr11 85438863 85438941 -65344612 + MIR SINE MIR 133 215 -47 550 304 0 0 chr11 85438943 85439068 -65344485 + MIR SINE MIR 2 126 -136 29 47 0 0 chr11 85439128 85439171 -65344382 + AT_rich Low_complexity Low_complexity 1 43 0 570 281 112 6 chr11 85439346 85439524 -65344029 - MIR SINE MIR -12 250 54 400 331 105 40 chr11 85440257 85440505 -65343048 + L2 LINE L2 2993 3256 -16 380 230 120 10 chr11 85440659 85440759 -65342794 - L2 LINE L2 0 3272 3162 360 263 42 21 chr11 85440866 85440961 -65342592 + MIR3 SINE MIR 60 156 -52 221 346 58 13 chr11 85441379 85441535 -65342018 - MIR3 SINE MIR -37 171 9 557 283 35 7 chr11 85442911 85443056 -65340497 - MIR SINE MIR -3 259 111 993 293 89 51 chr11 85443317 85443640 -65339913 + L1MEd LINE L1 289 598 -5521 2438 68 0 0 chr11 85443640 85443951 -65339602 + AluY SINE Alu 1 311 0 993 293 89 51 chr11 85443951 85444522 -65339031 + L1MEd LINE L1 598 1217 -4902 507 247 14 41 chr11 85444731 85444877 -65338676 - MIR SINE MIR -110 152 11 597 277 114 5 chr11 85445296 85445480 -65338073 + MIR SINE MIR 48 251 -11 841 220 40 52 chr11 85446143 85446393 -65337160 - MIR SINE MIR -5 257 11 256 242 69 72 chr11 85446624 85446759 -65336794 - MIR SINE MIR -58 150 30 323 233 2 0 chr11 85446945 85447018 -65336535 - MIR SINE MIR -90 118 44 472 318 108 41 chr11 85447462 85447824 -65335729 + L2 LINE L2 2479 2864 -450 275 277 168 25 chr11 85447949 85448068 -65335485 + L2 LINE L2 3136 3271 -1 323 291 157 38 chr11 85448831 85449150 -65334403 - L2 LINE L2 -2 3270 2914 1813 153 0 13 chr11 85449710 85450011 -65333542 + AluJb SINE Alu 1 297 -15 372 202 3 13 chr11 85450330 85450429 -65333124 - MIR SINE MIR -51 157 58 232 330 32 21 chr11 85450912 85451006 -65332547 + MIR SINE MIR 13 107 -155 255 297 66 0 chr11 85451173 85451264 -65332289 - MIR3 SINE MIR -45 163 67 545 272 85 29 chr11 85451764 85451991 -65331562 + MIR SINE MIR 20 261 -1 432 317 22 70 chr11 85451998 85452269 -65331284 + MIR SINE MIR 4 261 -1 304 269 26 0 chr11 85452948 85453026 -65330527 + L2 LINE L2 3185 3264 -8 1751 158 0 3 chr11 85453998 85454282 -65329271 + AluSx SINE Alu 3 285 -27 339 44 0 0 chr11 85454282 85454327 -65329226 + (CA)n Simple_repeat Simple_repeat 2 46 0 672 235 37 90 chr11 85454778 85455046 -65328507 - MER112 DNA MER1_type -1 259 6 319 305 110 25 chr11 85456246 85456364 -65327189 + MIR SINE MIR 119 246 -16 652 249 35 48 chr11 85456366 85456595 -65326958 - MIR SINE MIR -21 241 16 783 250 123 9 chr11 85456743 85456971 -65326582 + MIR SINE MIR 2 255 -7 974 120 0 0 chr11 85459079 85459221 -65324332 + AluSg/x SINE Alu 156 297 -15 990 246 49 101 chr11 85459410 85459647 -65323906 + Charlie7 DNA MER1_type 30 278 -2334 2088 121 0 9 chr11 85459647 85459962 -65323591 + AluSx SINE Alu 1 312 0 990 246 49 101 chr11 85459962 85460321 -65323232 + Charlie7 DNA MER1_type 278 595 -2017 340 250 11 0 chr11 85460437 85460525 -65323028 + Charlie7 DNA MER1_type 2508 2596 -16 184 243 0 0 chr11 85460632 85460669 -65322884 - MIR SINE MIR -95 113 77 305 333 65 0 chr11 85460678 85460816 -65322737 + MIR3 SINE MIR 52 198 -10 249 381 0 0 chr11 85461816 85461900 -65321653 - L2 LINE L2 -48 3265 3182 433 270 103 16 chr11 85462183 85462309 -65321244 - MIR3 SINE MIR -61 147 11 282 219 47 16 chr11 85462728 85462792 -65320761 + L2 LINE L2 3248 3313 0 303 265 60 51 chr11 85462817 85462934 -65320619 + MIR SINE MIR 16 133 -75 210 292 10 42 chr11 85463106 85463202 -65320351 - L2 LINE L2 -185 3087 2995 2144 197 18 30 chr11 85463467 85463908 -65319645 - MER63B DNA MER1_type 0 436 1 191 114 29 0 chr11 85464793 85464828 -65318725 + (GGGTG)n Simple_repeat Simple_repeat 3 38 0 469 313 91 0 chr11 85465216 85465392 -65318161 + MIR3 SINE MIR 2 193 -15 435 299 101 70 chr11 85465585 85466013 -65317540 - L2 LINE L2 0 3272 2832 235 327 17 18 chr11 85466182 85466311 -65317242 - MIR SINE MIR -74 134 2 387 220 80 49 chr11 85466811 85466948 -65316605 + MIR SINE MIR 17 136 -72 489 284 119 0 chr11 85467189 85467365 -65316188 + MIR SINE MIR 60 256 -6 265 186 0 0 chr11 85467397 85467440 -65316113 + MIR SINE MIR 217 259 -3 333 118 0 0 chr11 85468684 85468735 -65314818 + (CA)n Simple_repeat Simple_repeat 1 51 0 1694 131 0 93 chr11 85468905 85469249 -65314304 + AluJb SINE Alu 1 312 0 266 267 11 0 chr11 85469252 85469342 -65314211 + GA-rich Low_complexity Low_complexity 2 92 0 425 319 104 16 chr11 85469361 85469543 -65314010 - MIR SINE MIR -31 231 34 283 325 58 26 chr11 85470131 85470285 -65313268 + L3 LINE CR1 767 925 -652 629 356 3 45 chr11 85470591 85470883 -65312670 + L3 LINE CR1 1274 1553 -24 2043 125 3 10 chr11 85470962 85471274 -65312279 - AluSx SINE Alu -2 310 1 195 342 53 26 chr11 85471877 85471991 -65311562 + L3 LINE CR1 1459 1575 -2 579 294 71 11 chr11 85472078 85472262 -65311291 - MIR3 SINE MIR -6 202 8 354 281 0 10 chr11 85473267 85473363 -65310190 + MIR SINE MIR 168 262 0 195 310 0 0 chr11 85475002 85475060 -65308493 - MIR SINE MIR -43 219 162 378 286 79 15 chr11 85475117 85475291 -65308262 - MIR SINE MIR -39 223 39 188 229 29 19 chr11 85475335 85475440 -65308113 + CT-rich Low_complexity Low_complexity 3 108 0 413 194 7 36 chr11 85476593 85476732 -65306821 + GA-rich Low_complexity Low_complexity 4 138 0 415 255 84 28 chr11 85476741 85476942 -65306611 - MIR SINE MIR 0 262 45 2233 59 39 0 chr11 85477727 85478013 -65305540 - AluSc SINE Alu -12 297 1 384 316 53 28 chr11 85478042 85478256 -65305297 - L1ME4a LINE L1 -227 5894 5672 2479 132 46 2 chr11 85478256 85478666 -65304887 - MSTA LTR MaLR 0 428 1 384 316 53 28 chr11 85478666 85478698 -65304855 - L1ME4a LINE L1 -449 5672 5642 425 343 100 56 chr11 85479224 85479780 -65303773 - L2 LINE L2 -6 3266 2687 436 306 72 20 chr11 85479780 85480084 -65303469 + L1 LINE L1 4515 4834 -1312 1364 220 119 49 chr11 85480094 85480566 -65302987 - MLT1J LTR MaLR -6 505 1 239 325 42 18 chr11 85480616 85480782 -65302771 + L1 LINE L1 4882 5051 -1095 1780 155 3 34 chr11 85480788 85481110 -65302443 + AluJo SINE Alu 1 312 0 233 163 20 0 chr11 85481110 85481159 -65302394 + GA-rich Low_complexity Low_complexity 5 54 0 260 53 26 0 chr11 85481170 85481208 -65302345 + (GAAA)n Simple_repeat Simple_repeat 3 41 0 289 297 39 103 chr11 85481530 85481685 -65301868 - MIR3 SINE MIR -29 179 35 401 275 81 13 chr11 85481712 85481861 -65301692 - L2 LINE L2 0 3313 3155 402 276 211 6 chr11 85481920 85482076 -65301477 + MIR SINE MIR 2 189 -73 1075 175 9 28 chr11 85482867 85483078 -65300475 + AluJb SINE Alu 1 207 -105 322 286 95 19 chr11 85483538 85483643 -65299910 - MIR SINE MIR -102 160 48 271 302 0 14 chr11 85484076 85484188 -65299365 + MIR SINE MIR 79 147 -61 22 70 0 0 chr11 85485758 85485801 -65297752 + AT_rich Low_complexity Low_complexity 1 43 0 410 315 14 7 chr11 85485801 85485944 -65297609 - MIR SINE MIR -2 260 117 348 309 123 19 chr11 85485947 85486109 -65297444 + MIR SINE MIR 77 255 -7 24 67 0 0 chr11 85486148 85486193 -65297360 + AT_rich Low_complexity Low_complexity 1 45 0 342 295 62 23 chr11 85486624 85486753 -65296800 + MIR SINE MIR 18 151 -57 387 284 78 0 chr11 85486927 85487043 -65296510 + MIR3 SINE MIR 32 156 -52 607 275 49 45 chr11 85487514 85487761 -65295792 - MIR SINE MIR -2 260 13 185 284 15 30 chr11 85488118 85488185 -65295368 - L2 LINE L2 -31 3282 3217 372 248 262 13 chr11 85488296 85488445 -65295108 + MER5A DNA MER1_type 4 189 0 426 255 220 0 chr11 85488456 85488597 -65294956 + MER5B DNA MER1_type 4 175 -3 661 276 57 14 chr11 85488977 85489205 -65294348 + MIR SINE MIR 4 238 -24 198 314 59 76 chr11 85489397 85489515 -65294038 - MIR SINE MIR -56 206 91 550 288 104 27 chr11 85491447 85491669 -65291884 - MIR SINE MIR 0 262 24 559 271 117 35 chr11 85492747 85493116 -65290437 - L1ME4a LINE L1 -3 6118 5720 209 286 0 52 chr11 85493483 85493560 -65289993 + MIR SINE MIR 81 153 -109 672 264 88 15 chr11 85493706 85493912 -65289641 + MIR SINE MIR 44 262 0 205 156 0 0 chr11 85493923 85493955 -65289598 + (CACAT)n Simple_repeat Simple_repeat 4 35 0 495 260 122 50 chr11 85494051 85494232 -65289321 + MIR3 SINE MIR 1 194 -14 243 299 85 30 chr11 85494862 85495026 -65288527 - MIR SINE MIR -18 244 72 278 355 47 23 chr11 85495278 85495450 -65288103 + MER5B DNA MER1_type 3 178 0 416 285 158 30 chr11 85495459 85495624 -65287929 + MER5A DNA MER1_type 2 187 -2 284 257 68 0 chr11 85495634 85495708 -65287845 - MIR SINE MIR -56 152 74 1943 119 29 23 chr11 85495918 85496228 -65287325 + AluSx SINE Alu 1 312 0 209 328 0 0 chr11 85496482 85496543 -65287010 + MIR SINE MIR 89 149 -113 288 281 79 26 chr11 85496900 85497014 -65286539 - L2 LINE L2 0 3272 3153 334 345 126 6 chr11 85497282 85497456 -65286097 + MIR SINE MIR 54 248 -14 358 347 7 41 chr11 85497483 85497630 -65285923 - L2 LINE L2 -237 3035 2894 269 329 27 0 chr11 85499029 85499102 -65284451 - MIR SINE MIR -70 192 118 358 303 101 6 chr11 85499276 85499454 -65284099 - MIR SINE MIR -62 200 6 329 279 35 0 chr11 85499598 85499684 -65283869 - MIR3 SINE MIR -6 202 114 718 252 82 62 chr11 85500371 85500776 -65282777 - L1ME4a LINE L1 0 6121 5709 596 231 0 0 chr11 85500869 85500973 -65282580 + FLAM_C SINE Alu 2 105 -38 237 259 198 17 chr11 85501131 85501247 -65282306 + L1ME4a LINE L1 5982 6118 -3 206 164 92 21 chr11 85501646 85501703 -65281850 + MIR3 SINE MIR 99 160 -48 539 281 100 14 chr11 85501760 85501970 -65281583 + MIR SINE MIR 20 247 -15 232 222 0 19 chr11 85501974 85502028 -65281525 + (TTA)n Simple_repeat Simple_repeat 1 53 0 197 289 0 19 chr11 85502306 85502358 -65281195 + L2 LINE L2 3217 3267 -5 379 261 65 0 chr11 85502467 85502559 -65280994 - MIR SINE MIR -57 151 54 2057 125 0 3 chr11 85502563 85502858 -65280695 + AluSx SINE Alu 1 294 -18 186 339 15 0 chr11 85502878 85502943 -65280610 - MIR SINE MIR -142 120 55 200 262 250 0 chr11 85503121 85503205 -65280348 + MIR SINE MIR 47 151 -111 431 284 162 22 chr11 85504005 85504226 -65279327 - MIR3 SINE MIR -3 259 9 259 333 0 0 chr11 85504904 85504982 -65278571 + MIR SINE MIR 55 132 -76 456 182 264 31 chr11 85505156 85505304 -65278249 - MIR SINE MIR -71 191 14 247 235 278 9 chr11 85506436 85506551 -65277002 - MIR3 SINE MIR -29 179 34 302 274 39 0 chr11 85509021 85509123 -65274430 - MER103 DNA DNA -58 108 3 188 328 62 0 chr11 85509327 85509391 -65274162 + MIR SINE MIR 97 164 -98 390 160 63 63 chr11 85509391 85509566 -65273987 + L1MEc LINE L1 2032 2206 -4190 299 227 40 40 chr11 85509567 85509642 -65273911 + MIR SINE MIR 153 227 -35 440 311 140 49 chr11 85509974 85510302 -65273251 - L2 LINE L2 -1 3271 2914 429 268 67 67 chr11 85510895 85511074 -65272479 - MIR SINE MIR -52 210 32 580 196 191 10 chr11 85511300 85511504 -65272049 + MER112 DNA MER1_type 8 248 -12 504 286 6 18 chr11 85511656 85511827 -65271726 - MLT1K LTR MaLR -278 310 142 404 249 116 58 chr11 85511933 85512106 -65271447 - MIR SINE MIR -60 202 20 2124 126 13 31 chr11 85512159 85512583 -65270970 + AluSx SINE Alu 1 418 0 296 327 0 0 chr11 85513026 85513130 -65270423 - MIR3 SINE MIR 0 208 105 1307 184 161 0 chr11 85513207 85513462 -65270091 + AluJo SINE Alu 2 297 -15 477 302 0 14 chr11 85513570 85513709 -65269844 - MIR SINE MIR -106 156 20 2064 152 71 43 chr11 85513976 85514396 -65269157 - MSTB1 LTR MaLR 0 432 1 198 0 0 0 chr11 85514591 85514613 -65268940 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 187 337 130 70 chr11 85514616 85515031 -65268522 + L2 LINE L2 2812 3251 -21 2282 109 3 0 chr11 85515243 85515545 -65268008 + AluSg1 SINE Alu 1 303 -6 330 234 187 0 chr11 85515919 85516026 -65267527 - L1ME LINE L1 -500 5662 5536 309 274 194 8 chr11 85516597 85516797 -65266756 - MIR SINE MIR 0 262 13 255 216 20 0 chr11 85516779 85516830 -65266723 + L2 LINE L2 3241 3292 -21 * 198 302 32 0 chr11 85516870 85516933 -65266620 - MIR3 SINE MIR -7 201 137 207 309 87 32 chr11 85516972 85517098 -65266455 - L2 LINE L2 -4 3268 3136 319 294 151 0 chr11 85517275 85517401 -65266152 + L2 LINE L2 3169 3313 0 180 270 0 68 chr11 85517465 85517539 -65266014 - MIR3 SINE MIR -133 75 7 550 301 128 5 chr11 85518311 85518514 -65265039 + MIR SINE MIR 31 258 -4 341 389 38 13 chr11 85518550 85518707 -65264846 + L2 LINE L2 3107 3267 -5 843 134 31 0 chr11 85522203 85522330 -65261223 - FLAM_C SINE Alu 0 133 3 230 306 102 31 chr11 85525397 85525495 -65258058 + MIR SINE MIR 33 137 -71 855 205 9 2 chr11 85525696 85525873 -65257680 - MER5A DNA MER1_type 0 189 1 435 83 0 0 chr11 85526044 85526104 -65257449 + (TG)n Simple_repeat Simple_repeat 1 60 0 806 150 15 8 chr11 85526104 85526237 -65257316 + AluJb SINE Alu 147 280 -32 398 232 239 7 chr11 85526733 85526875 -65256678 - MER5A DNA MER1_type 0 189 15 407 267 64 47 chr11 85526897 85527069 -65256484 + MER5B DNA MER1_type 4 178 0 460 302 72 7 chr11 85527316 85527455 -65256098 - MIR SINE MIR -104 158 11 314 295 169 44 chr11 85528751 85528934 -65254619 + MIR SINE MIR 6 211 -51 457 278 99 7 chr11 85529689 85529864 -65253689 - MIR SINE MIR -65 143 3 198 0 0 0 chr11 85530585 85530607 -65252946 + (TTTTTG)n Simple_repeat Simple_repeat 1 22 0 492 271 199 0 chr11 85530607 85530773 -65252780 - MIR SINE MIR -14 248 50 286 263 59 68 chr11 85530819 85530937 -65252616 + MIR SINE MIR 128 244 -18 243 0 0 0 chr11 85530952 85530979 -65252574 + (TTG)n Simple_repeat Simple_repeat 2 28 0 225 119 0 0 chr11 85531660 85531702 -65251851 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 2146 85 55 0 chr11 85531718 85531990 -65251563 - AluSx SINE Alu -25 287 1 240 304 22 80 chr11 85532871 85533009 -65250544 + L1MCb LINE L1 611 740 -5682 1887 243 97 31 chr11 85533356 85534235 -65249318 + L1MCb LINE L1 975 1795 -5146 186 43 0 0 chr11 85534235 85534258 -65249295 + (CA)n Simple_repeat Simple_repeat 2 24 0 1887 243 97 31 chr11 85534258 85534447 -65249106 + L1MCb LINE L1 1795 1970 -4971 2372 93 7 0 chr11 85534447 85534748 -65248805 + AluSq SINE Alu 1 303 -10 1887 243 97 31 chr11 85534748 85534795 -65248758 + L1MCb LINE L1 1970 2175 -4766 1121 165 19 29 chr11 85534847 85535053 -65248500 + AluJo SINE Alu 87 290 -22 23 0 0 0 chr11 85535053 85535076 -65248477 + AT_rich Low_complexity Low_complexity 1 23 0 485 308 99 56 chr11 85535076 85535469 -65248084 - LTR33 LTR ERVL -111 410 1 2231 103 0 3 chr11 85536087 85536378 -65247175 - AluSx SINE Alu -22 290 1 536 318 29 6 chr11 85536681 85536854 -65246699 + MIR SINE MIR 8 184 -78 1013 265 157 16 chr11 85536999 85537425 -65246128 - L2 LINE L2 0 3313 2828 410 219 65 73 chr11 85537444 85537567 -65245986 - L2 LINE L2 -7 3306 3185 331 283 61 0 chr11 85537611 85537710 -65245843 - MIR SINE MIR -53 209 105 316 267 50 20 chr11 85537764 85537865 -65245688 - MIR SINE MIR -141 121 18 217 358 130 16 chr11 85538605 85538728 -65244825 - L2 LINE L2 -7 3265 3129 235 305 72 68 chr11 85538804 85539083 -65244470 - L2 LINE L2 -12 3260 2981 492 203 68 0 chr11 85539607 85539740 -65243813 - L1ME4a LINE L1 -4 6117 5976 509 264 19 122 chr11 85540886 85541159 -65242394 + MIR SINE MIR 18 259 -3 329 326 68 0 chr11 85541402 85541534 -65242019 + L3 LINE CR1 1427 1567 -10 190 254 75 15 chr11 85541614 85541681 -65241872 - MIR SINE MIR -98 164 94 224 267 23 93 chr11 85542756 85542842 -65240711 + MIR SINE MIR 16 95 -113 325 343 59 18 chr11 85542901 85543120 -65240433 + MIR SINE MIR 20 247 -15 3940 151 112 76 chr11 85543331 85544228 -65239325 - MER21A LTR ERV1 -2 929 1 642 259 64 68 chr11 85545238 85545489 -65238064 - MIR SINE MIR -1 261 12 237 83 0 0 chr11 85545549 85545585 -65237968 + (TG)n Simple_repeat Simple_repeat 1 36 0 186 107 0 0 chr11 85545639 85545667 -65237886 + L2 LINE L2 3209 3236 -36 849 293 36 4 chr11 85545672 85545925 -65237628 - MIR SINE MIR 0 262 2 223 306 100 12 chr11 85546030 85546200 -65237353 - L2 LINE L2 -214 3099 2915 15449 49 63 3 chr11 85546307 85548374 -65235179 + L1P LINE L1 3 2192 -3954 372 264 100 7 chr11 85548907 85549047 -65234506 + MIR SINE MIR 97 249 -13 25 0 0 0 chr11 85549055 85549080 -65234473 + AT_rich Low_complexity Low_complexity 1 25 0 367 231 49 24 chr11 85549815 85549958 -65233595 - MIR SINE MIR -1 261 71 317 303 53 0 chr11 85551781 85551913 -65231640 + MIR3 SINE MIR 4 142 -66 639 245 37 27 chr11 85552083 85552271 -65231282 + MIR3 SINE MIR 16 205 -3 248 313 84 30 chr11 85552391 85552557 -65230996 + L2 LINE L2 3139 3313 0 260 295 207 14 chr11 85553242 85553380 -65230173 + MIR SINE MIR 19 176 -65 406 273 50 33 chr11 85553419 85553540 -65230013 - L2 LINE L2 0 3272 3150 502 259 30 71 chr11 85553635 85553832 -65229721 + MIR SINE MIR 20 208 -54 230 309 40 32 chr11 85553877 85554003 -65229550 - MIR SINE MIR -50 212 86 187 229 0 98 chr11 85554064 85554125 -65229428 - MIR SINE MIR -65 143 89 191 325 25 38 chr11 85554826 85554906 -65228647 + MIR SINE MIR 108 186 -76 352 339 8 40 chr11 85554920 85555044 -65228509 - L2 LINE L2 -19 3253 3134 192 289 0 0 chr11 85555076 85555121 -65228432 + L2 LINE L2 3251 3295 -18 436 280 63 42 chr11 85555323 85555512 -65228041 + MIR SINE MIR 19 211 -51 240 221 39 39 chr11 85555982 85556059 -65227494 + L2 LINE L2 3196 3272 0 324 289 111 15 chr11 85557081 85557216 -65226337 - MIR SINE MIR -59 203 56 290 293 13 0 chr11 85557414 85557489 -65226064 + (TCCA)n Simple_repeat Simple_repeat 1 76 0 186 335 191 25 chr11 85557548 85558076 -65225477 - L2 LINE L2 -1637 1677 1062 224 306 32 0 chr11 85558243 85558305 -65225248 - MIR SINE MIR -66 142 79 365 262 103 0 chr11 85558782 85558914 -65224639 + MIR SINE MIR 23 173 -65 256 190 86 0 chr11 85558923 85558981 -65224572 - L2 LINE L2 -8 3305 3243 181 254 181 78 chr11 85559910 85560115 -65223438 + L2 LINE L2 2628 2853 -461 269 289 83 58 chr11 85560493 85560614 -65222939 + MIR SINE MIR 6 129 -133 229 171 53 118 chr11 85562355 85562431 -65221122 + L2 LINE L2 3240 3310 -3 215 273 273 0 chr11 85562719 85562796 -65220757 - MIR SINE MIR -133 129 32 211 271 188 0 chr11 85562900 85562985 -65220568 - MIR SINE MIR -12 250 150 195 273 318 0 chr11 85564031 85564119 -65219434 - L2 LINE L2 -2 3270 3155 270 0 0 0 chr11 85564121 85564151 -65219402 + (GA)n Simple_repeat Simple_repeat 1 30 0 785 244 39 74 chr11 85564170 85564428 -65219125 + MIR SINE MIR 2 250 -12 186 304 104 22 chr11 85564522 85564657 -65218896 + MIR SINE MIR 20 137 -71 260 364 140 0 chr11 85565288 85565431 -65218122 - MIR SINE MIR -32 230 68 757 224 56 36 chr11 85565624 85565820 -65217733 - MIR SINE MIR -17 245 46 551 243 182 6 chr11 85566364 85566407 -65217146 - MIR SINE MIR 0 262 228 2148 112 0 3 chr11 85566407 85566711 -65216842 - AluSg1 SINE Alu -4 305 3 551 243 182 6 chr11 85566711 85566848 -65216705 - MIR SINE MIR -34 228 50 202 289 0 40 chr11 85567567 85567643 -65215910 + MIR SINE MIR 67 139 -123 * 360 254 92 56 chr11 85567640 85567782 -65215771 + L2 LINE L2 3156 3302 -11 221 283 33 0 chr11 85567799 85567859 -65215694 + MIR SINE MIR 131 192 -70 186 291 55 0 chr11 85567881 85567936 -65215617 - MIR SINE MIR -28 234 177 388 259 65 0 chr11 85568067 85568175 -65215378 - L2 LINE L2 0 3313 3199 227 302 83 21 chr11 85568193 85568289 -65215264 - L2 LINE L2 -476 2838 2737 545 194 0 0 chr11 85568399 85568497 -65215056 + AluSg/x SINE Alu 209 306 -3 6695 180 24 17 chr11 85568497 85568638 -65214915 - L1 LINE L1 -2527 4321 4183 2068 101 0 36 chr11 85568638 85568946 -65214607 - AluSx SINE Alu -15 297 1 6695 180 24 17 chr11 85568946 85570580 -65212973 - L1 LINE L1 -2665 4183 2524 2117 112 3 10 chr11 85570580 85570894 -65212659 - AluSx SINE Alu 0 312 1 6695 180 24 17 chr11 85570894 85571308 -65212245 - L1 LINE L1 -4324 2524 2114 1111 149 12 99 chr11 85571379 85571621 -65211932 - AluJo SINE Alu -91 221 1 2163 163 36 12 chr11 85571621 85572119 -65211434 - L1 LINE L1 -4722 2127 1618 900 211 5 0 chr11 85572247 85572437 -65211116 + AluJb SINE Alu 120 310 -2 3338 268 24 30 chr11 85572454 85573848 -65209705 + L1M1 LINE L1 175 2246 -5319 783 250 123 9 chr11 85575542 85575770 -65207783 - MIR SINE MIR -7 255 2 652 249 35 48 chr11 85575918 85576147 -65207406 + MIR SINE MIR 16 241 -21 319 305 110 25 chr11 85576149 85576267 -65207286 - MIR SINE MIR -16 246 119 672 235 37 90 chr11 85577468 85577736 -65205817 + MER112 DNA MER1_type 6 259 -1 339 44 0 0 chr11 85578187 85578232 -65205321 + (TG)n Simple_repeat Simple_repeat 2 46 0 1751 158 0 3 chr11 85578232 85578516 -65205037 - AluSx SINE Alu -27 285 3 304 269 26 0 chr11 85579489 85579567 -65203986 - L2 LINE L2 -8 3264 3185 432 317 22 70 chr11 85580246 85580517 -65203036 - MIR SINE MIR -1 261 4 569 276 80 28 chr11 85580524 85580752 -65202801 - MIR SINE MIR -1 261 20 255 297 66 0 chr11 85581252 85581343 -65202210 + MIR3 SINE MIR 67 163 -45 232 330 32 21 chr11 85581510 85581604 -65201949 - MIR SINE MIR -155 107 13 372 202 3 13 chr11 85582087 85582186 -65201367 + MIR SINE MIR 58 157 -51 1813 153 0 13 chr11 85582505 85582806 -65200747 - AluJb SINE Alu -15 297 1 305 295 157 38 chr11 85583366 85583685 -65199868 + L2 LINE L2 2914 3270 -2 275 277 168 25 chr11 85584448 85584567 -65198986 - L2 LINE L2 -1 3271 3136 470 303 114 46 chr11 85584692 85585016 -65198537 - L2 LINE L2 -450 2864 2519 323 233 2 0 chr11 85585498 85585571 -65197982 + MIR SINE MIR 44 118 -90 256 242 69 72 chr11 85585757 85585892 -65197661 + MIR SINE MIR 30 165 -58 841 220 40 52 chr11 85586123 85586373 -65197180 + MIR SINE MIR 11 257 -5 584 283 114 5 chr11 85587036 85587220 -65196333 - MIR SINE MIR -11 251 48 507 247 14 41 chr11 85587639 85587785 -65195768 + MIR SINE MIR 11 152 -110 539 283 71 45 chr11 85587994 85588500 -65195053 - L1MEd LINE L1 -4902 1217 699 1905 116 29 23 chr11 85588565 85588875 -65194678 - AluSx SINE Alu 0 312 1 284 257 68 0 chr11 85589085 85589159 -65194394 + MIR SINE MIR 74 152 -56 392 291 158 30 chr11 85589169 85589334 -65194219 - MER5A DNA MER1_type -2 187 2 278 355 47 23 chr11 85589343 85589515 -65194038 - MER5B DNA MER1_type 0 178 3 243 299 85 30 chr11 85589767 85589931 -65193622 + MIR SINE MIR 72 244 -18 495 260 122 50 chr11 85590562 85590743 -65192810 - MIR3 SINE MIR -14 194 1 205 156 0 0 chr11 85590839 85590871 -65192682 + (ATGTG)n Simple_repeat Simple_repeat 4 35 0 694 258 111 31 chr11 85590882 85591107 -65192446 - MIR SINE MIR 0 262 20 292 246 33 115 chr11 85591160 85591343 -65192210 - MIR SINE MIR -14 248 81 554 271 117 35 chr11 85591710 85592079 -65191474 + L1ME4a LINE L1 5720 6118 -3 419 238 0 0 chr11 85593528 85593612 -65189941 + L2 LINE L2 3225 3308 -5 24 32 0 0 chr11 85593676 85593707 -65189846 + AT_rich Low_complexity Low_complexity 1 31 0 1916 144 3 28 chr11 85593773 85594093 -65189460 + AluJo SINE Alu 1 312 0 400 263 196 0 chr11 85594302 85594435 -65189118 - MIR SINE MIR -48 214 56 4052 143 17 3 chr11 85594451 85595113 -65188440 - L1MB3 LINE L1 -7 6176 5506 314 267 60 52 chr11 85595603 85595719 -65187834 + MIR SINE MIR 75 191 -71 741 289 0 28 chr11 85596119 85596337 -65187216 - MIR SINE MIR 0 262 51 21 36 0 0 chr11 85596576 85596604 -65186949 + AT_rich Low_complexity Low_complexity 1 28 0 757 237 232 0 chr11 85598795 85599006 -65184547 - MIR SINE MIR -1 261 2 535 269 38 7 chr11 85599052 85599204 -65184349 + MIR SINE MIR 16 174 -66 306 106 0 0 chr11 85599323 85599370 -65184183 + (CA)n Simple_repeat Simple_repeat 1 47 0 774 244 105 0 chr11 85599468 85599677 -65183876 + MIR SINE MIR 20 250 -12 197 315 65 37 chr11 85600996 85601104 -65182449 + L2 LINE L2 2943 3053 -219 367 206 49 10 chr11 85602438 85602540 -65181013 + L1ME4a LINE L1 5967 6072 -49 407 329 43 30 chr11 85602613 85602844 -65180709 + L2 LINE L2 2553 2786 -528 1937 139 3 0 chr11 85602871 85603166 -65180387 + AluSx SINE Alu 1 296 -16 380 270 64 82 chr11 85603448 85603548 -65180005 - MIR SINE MIR -28 234 134 207 0 0 0 chr11 85603548 85603571 -65179982 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 380 270 64 82 chr11 85603571 85603703 -65179850 - MIR SINE MIR -128 134 6 2526 175 42 12 chr11 85603767 85604248 -65179305 + LTR42 LTR ERVL 1 495 0 539 225 20 46 chr11 85604301 85604452 -65179101 - MIR3 SINE MIR -7 201 55 587 310 16 5 chr11 85604628 85604815 -65178738 + MIR3 SINE MIR 19 207 -1 307 333 33 8 chr11 85605492 85605612 -65177941 + MIR3 SINE MIR 11 133 -75 312 323 204 30 chr11 85605642 85605877 -65177676 + L2 LINE L2 2985 3260 -12 247 281 0 0 chr11 85605886 85605943 -65177610 + L3b LINE CR1 1522 1578 -5 394 218 113 42 chr11 85607977 85608119 -65175434 - MIR SINE MIR -60 202 51 593 273 44 44 chr11 85608152 85608335 -65175218 + MIR SINE MIR 46 228 -34 581 283 103 66 chr11 85609303 85609653 -65173900 + L3 LINE CR1 1036 1398 -179 331 305 133 13 chr11 85609660 85609811 -65173742 + L2 LINE L2 3102 3270 -2 322 310 30 0 chr11 85610001 85610101 -65173452 + MIR SINE MIR 40 142 -66 1456 114 28 0 chr11 85610289 85610500 -65173053 + L1PA10 LINE L1 5941 6157 -11 319 309 89 35 chr11 85611668 85611842 -65171711 - MIR SINE MIR -46 216 34 1783 191 41 3 chr11 85611906 85612246 -65171307 - MSTA LTR MaLR 0 428 76 1909 74 0 8 chr11 85612259 85612501 -65171052 - AluSg/x SINE Alu -2 310 71 2231 92 0 3 chr11 85612601 85612883 -65170670 - AluSx SINE Alu -21 291 11 388 127 0 0 chr11 85612884 85612939 -65170614 - MSTA LTR MaLR -373 55 1 260 305 125 8 chr11 85613270 85613398 -65170155 + MIR SINE MIR 46 188 -74 546 199 238 7 chr11 85613469 85613620 -65169933 - MER5A DNA MER1_type -2 187 2 234 0 0 0 chr11 85614165 85614191 -65169362 + (T)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr11 85614212 85614234 -65169319 + GC_rich Low_complexity Low_complexity 1 22 0 2372 94 7 3 chr11 85614370 85614679 -65168874 - AluSq SINE Alu -3 310 1 182 322 22 22 chr11 85614804 85614894 -65168659 + L2 LINE L2 2584 2673 -641 249 147 107 40 chr11 85614992 85615067 -65168486 + Charlie8 DNA MER1_type 57 136 -2281 401 266 91 0 chr11 85615268 85615411 -65168142 + MER113 DNA MER1_type? 1 156 -365 338 323 10 124 chr11 85615661 85615764 -65167789 + L2 LINE L2 2915 3028 -244 333 0 0 0 chr11 85615764 85615801 -65167752 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2184 104 4 0 chr11 85615801 85616081 -65167472 - AluSp SINE Alu -32 281 1 338 323 10 124 chr11 85616081 85616378 -65167175 + L2 LINE L2 3026 3270 -2 477 256 166 25 chr11 85617588 85617787 -65165766 + MIR SINE MIR 21 247 -15 453 208 38 65 chr11 85617874 85618012 -65165541 + MIR SINE MIR 20 152 -61 471 254 71 24 chr11 85619243 85619412 -65164141 - MIR SINE MIR -7 255 79 247 319 32 0 chr11 85620325 85620419 -65163134 - MIR SINE MIR -84 124 28 510 275 138 5 chr11 85620898 85621116 -65162437 - MIR SINE MIR 0 262 16 467 269 88 11 chr11 85621436 85621618 -65161935 - HAL1 LINE L1 -10 2497 2302 1300 239 199 52 chr11 85621695 85622353 -65161200 - HAL1 LINE L1 -471 2036 1282 1215 243 181 75 chr11 85622408 85623405 -65160148 - HAL1 LINE L1 -1352 1155 53 398 308 37 57 chr11 85623437 85623518 -65160035 + L2 LINE L2 1955 2036 -1236 2222 108 0 0 chr11 85623518 85623835 -65159718 + AluSc SINE Alu 1 317 0 398 308 37 57 chr11 85623835 85624259 -65159294 + L2 LINE L2 2036 3267 -5 2043 126 27 0 chr11 85624378 85624672 -65158881 + AluSq SINE Alu 11 312 -1 190 299 11 23 chr11 85624688 85624775 -65158778 + MIR SINE MIR 103 188 -74 21 0 0 0 chr11 85625148 85625169 -65158384 + AT_rich Low_complexity Low_complexity 1 21 0 2258 136 16 27 chr11 85625389 85625757 -65157796 + THE1B LTR MaLR 1 364 0 280 330 53 0 chr11 85625893 85625987 -65157566 + MIR3 SINE MIR 8 106 -102 343 305 90 8 chr11 85626005 85626480 -65157073 - L1ME4a LINE L1 -207 5914 5379 323 287 123 42 chr11 85626618 85626879 -65156674 - L1ME4a LINE L1 -908 5238 4957 327 256 147 101 chr11 85626884 85627122 -65156431 - MER102b DNA MER1_type 0 341 93 256 310 139 32 chr11 85627497 85628030 -65155523 - L1ME4a LINE L1 -1534 4612 4023 349 268 32 32 chr11 85628263 85628386 -65155167 + MIR SINE MIR 127 249 -13 632 275 34 8 chr11 85629099 85629335 -65154218 + MIR SINE MIR 14 255 -7 984 224 31 4 chr11 85629351 85629605 -65153948 - MIR SINE MIR 0 262 2 257 353 36 63 chr11 85631015 85631181 -65152372 + MIR SINE MIR 34 194 -68 1790 171 0 47 chr11 85631181 85631286 -65152267 + AluJo SINE Alu 1 109 -203 2226 124 3 0 chr11 85631286 85631585 -65151968 + AluSq SINE Alu 1 300 -13 1790 171 0 47 chr11 85631585 85631800 -65151753 + AluJo SINE Alu 109 306 -6 257 353 36 63 chr11 85631800 85631854 -65151699 + MIR SINE MIR 194 248 -14 1606 164 46 75 chr11 85632494 85632650 -65150903 + MLT1B LTR MaLR 13 172 -218 2335 103 0 0 chr11 85632650 85632950 -65150603 + AluSc SINE Alu 1 300 -9 1606 164 46 75 chr11 85632950 85633182 -65150371 + MLT1B LTR MaLR 172 390 0 223 352 23 93 chr11 85633317 85633533 -65150020 + L2 LINE L2 3024 3224 -48 286 297 22 11 chr11 85633664 85633755 -65149798 - MIR SINE MIR -151 111 20 184 354 44 9 chr11 85634644 85634757 -65148796 + L2 LINE L2 3155 3271 -1 201 271 76 76 chr11 85634980 85635098 -65148455 + L2 LINE L2 3146 3263 -9 395 277 138 45 chr11 85635119 85635408 -65148145 + MLT1J LTR MaLR 1 316 -195 186 103 0 0 chr11 85636412 85636441 -65147112 + (TCCC)n Simple_repeat Simple_repeat 2 30 0 269 263 44 142 chr11 85636675 85636880 -65146673 + L2 LINE L2 2870 3054 -218 231 146 0 0 chr11 85637118 85637159 -65146394 + (GGAA)n Simple_repeat Simple_repeat 4 44 0 392 331 44 0 chr11 85637712 85637872 -65145681 + MIR SINE MIR 86 252 -10 192 77 0 0 chr11 85637875 85637901 -65145652 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 190 289 44 88 chr11 85638024 85638138 -65145415 + MIR SINE MIR 104 212 -50 225 0 0 0 chr11 85638350 85638375 -65145178 + (TG)n Simple_repeat Simple_repeat 2 26 0 402 285 99 29 chr11 85639023 85639195 -65144358 - MIR SINE MIR -12 250 67 289 319 8 25 chr11 85639272 85639391 -65144162 + MER5A DNA MER1_type 70 186 -3 386 214 279 0 chr11 85639422 85639562 -65143991 + MER5A DNA MER1_type 9 187 -2 180 287 81 23 chr11 85640365 85640452 -65143101 - L2 LINE L2 -47 3225 3134 1850 175 7 0 chr11 85640691 85640982 -65142571 + AluJb SINE Alu 1 293 -19 1740 167 3 26 chr11 85641035 85641341 -65142212 - AluJo SINE Alu -13 299 1 207 69 0 0 chr11 85643333 85643362 -65140191 + (CTAG)n Simple_repeat Simple_repeat 2 30 0 312 259 84 54 chr11 85643371 85643537 -65140016 - MLT1J LTR MaLR -60 451 281 505 304 68 5 chr11 85643763 85643970 -65139583 - MIR SINE MIR -23 239 20 304 304 48 16 chr11 85648588 85648713 -65134840 - MIR SINE MIR -108 154 26 480 264 12 37 chr11 85649575 85649738 -65133815 - MIR3 SINE MIR -30 178 20 438 259 40 75 chr11 85650491 85650665 -65132888 + MIR SINE MIR 23 190 -72 360 239 11 11 chr11 85650716 85650804 -65132749 - MIR SINE MIR -109 153 66 1340 258 44 28 chr11 85651745 85652218 -65131335 + L1ME1 LINE L1 5255 5735 -2073 417 39 0 0 chr11 85652335 85652386 -65131167 + (A)n Simple_repeat Simple_repeat 1 51 0 972 198 18 27 chr11 85652740 85652962 -65130591 + L1ME1 LINE L1 5942 6161 -5 986 242 182 8 chr11 85653140 85653520 -65130033 + LTR33 LTR ERVL 24 469 -52 183 307 30 10 chr11 85653648 85653749 -65129804 - L3 LINE CR1 -257 1320 1218 215 253 0 69 chr11 85654319 85654406 -65129147 - L2 LINE L2 -6 3307 3227 223 241 51 13 chr11 85655067 85655146 -65128407 - MIR SINE MIR -44 218 137 469 282 129 6 chr11 85655146 85655316 -65128237 - MIR SINE MIR -52 210 20 865 288 16 4 chr11 85655931 85656174 -65127379 - MIR SINE MIR -8 254 9 328 333 0 19 chr11 85656236 85656341 -65127212 - MIR SINE MIR -134 128 26 709 287 38 13 chr11 85656357 85656594 -65126959 + MIR SINE MIR 5 247 -15 457 290 84 19 chr11 85656664 85656878 -65126675 + MIR SINE MIR 21 248 -14 1453 192 7 25 chr11 85657524 85657805 -65125748 + AluJo SINE Alu 1 276 -36 216 0 0 0 chr11 85657813 85657837 -65125716 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 324 319 50 19 chr11 85658387 85658547 -65125006 - MIR SINE MIR -51 211 47 243 350 165 5 chr11 85658773 85658973 -65124580 + L2 LINE L2 2526 2757 -557 558 319 107 40 chr11 85659135 85659434 -65124119 + L2 LINE L2 2947 3267 -5 442 295 115 6 chr11 85659463 85659619 -65123934 - L3 LINE CR1 -11 1566 1394 731 242 6 6 chr11 85660056 85660217 -65123336 - MER117 DNA MER1_type 0 197 37 426 358 67 14 chr11 85660391 85660673 -65122880 - L3 LINE CR1 -1 1576 1280 184 122 122 24 chr11 85660758 85660799 -65122754 - L3 LINE CR1 -25 1552 1508 595 293 83 0 chr11 85663476 85663681 -65119872 - MIR SINE MIR -20 242 21 450 214 79 10 chr11 85663809 85663933 -65119620 - MER5A DNA MER1_type -36 142 1 433 335 38 0 chr11 85664322 85664480 -65119073 + MIR SINE MIR 34 197 -65 463 381 51 22 chr11 85664534 85664790 -65118763 - MIR SINE MIR -1 261 3 195 324 200 9 chr11 85665165 85665270 -65118283 + MIR SINE MIR 26 150 -112 665 264 131 7 chr11 85665289 85665495 -65118058 + L2 LINE L2 2702 2930 -342 420 20 0 0 chr11 85665662 85665711 -65117842 + (CA)n Simple_repeat Simple_repeat 1 49 0 195 42 0 0 chr11 85665713 85665737 -65117816 + (TC)n Simple_repeat Simple_repeat 2 25 0 559 256 18 43 chr11 85665804 85665968 -65117585 + L2 LINE L2 3146 3305 -8 182 244 0 24 chr11 85666000 85666041 -65117512 + L2 LINE L2 3224 3263 -9 1533 166 51 7 chr11 85666621 85666916 -65116637 + AluJb SINE Alu 1 308 -4 391 214 20 10 chr11 85667023 85667121 -65116432 + L1MD2 LINE L1 6245 6343 -16 1543 116 141 2 chr11 85667420 85667805 -65115748 - LTR54 LTR ERV1 0 510 1 509 217 76 32 chr11 85667856 85668013 -65115540 + MER103 DNA DNA 2 165 -1 279 277 32 21 chr11 85668689 85668783 -65114770 + MIR SINE MIR 75 169 -93 324 177 48 0 chr11 85669056 85669118 -65114435 - MIR SINE MIR -86 176 112 340 355 52 35 chr11 85669390 85669562 -65113991 - MIR3 SINE MIR -5 203 29 393 224 98 21 chr11 85669871 85670014 -65113539 + MIR SINE MIR 90 243 -19 2717 19 0 0 chr11 85670077 85670387 -65113166 + AluYb8 SINE Alu 1 310 -8 535 188 8 43 chr11 85670442 85670559 -65112994 - MIR SINE MIR -64 144 32 452 247 164 14 chr11 85670739 85670885 -65112668 - MIR SINE MIR -67 195 28 212 314 43 64 chr11 85671240 85671380 -65112173 - MIR SINE MIR -74 188 52 206 270 208 38 chr11 85671565 85671724 -65111829 + L2 LINE L2 2815 3000 -272 1028 211 16 52 chr11 85671764 85671930 -65111623 + MIR SINE MIR 1 157 -105 2542 171 60 38 chr11 85671930 85672479 -65111074 + MER68 LTR ERV1 1 561 -1 1028 211 16 52 chr11 85672479 85672563 -65110990 + MIR SINE MIR 157 242 -20 242 286 20 128 chr11 85672550 85672746 -65110807 + L2 LINE L2 3036 3210 -62 * 217 227 78 35 chr11 85673541 85673682 -65109871 + L2 LINE L2 2914 3060 -212 202 256 0 115 chr11 85673710 85673788 -65109765 - L2 LINE L2 0 3313 3245 233 167 24 0 chr11 85673887 85673929 -65109624 + L2 LINE L2 3270 3312 -1 209 253 160 13 chr11 85673947 85674022 -65109531 - MIR SINE MIR -18 244 159 917 245 84 16 chr11 85674022 85674271 -65109282 + MLT1H1 LTR MaLR 1 266 -289 381 75 19 0 chr11 85674286 85674339 -65109214 + MSTB1 LTR MaLR 1 54 -378 1229 165 81 17 chr11 85674339 85674575 -65108978 + AluJb SINE Alu 1 251 -61 2535 124 40 5 chr11 85674618 85674996 -65108557 + MSTB1 LTR MaLR 42 432 0 1119 238 19 23 chr11 85675006 85675267 -65108286 + MLT1H1 LTR MaLR 296 555 0 242 248 208 32 chr11 85675274 85675399 -65108154 - MIR SINE MIR -106 156 10 570 307 79 13 chr11 85675581 85675821 -65107732 - MIR SINE MIR 0 262 10 329 277 44 66 chr11 85675845 85675982 -65107571 - L3 LINE CR1 -745 832 699 206 281 144 65 chr11 85675999 85676152 -65107401 - L2 LINE L2 -211 3061 2897 444 301 134 5 chr11 85676199 85676385 -65107168 + L1ME4a LINE L1 5901 6110 -11 437 222 105 26 chr11 85677199 85677352 -65106201 + L1ME4a LINE L1 5956 6120 -1 467 259 45 40 chr11 85677519 85677720 -65105833 + MIR SINE MIR 16 217 -45 277 286 7 93 chr11 85677999 85678139 -65105414 - MIR SINE MIR -112 150 23 453 221 107 46 chr11 85678693 85678824 -65104729 - L2 LINE L2 -11 3302 3164 871 198 57 0 chr11 85678873 85679050 -65104503 + MER5A DNA MER1_type 3 189 0 2558 52 0 0 chr11 85679107 85679416 -65104137 + AluY SINE Alu 1 309 -2 226 245 129 82 chr11 85679777 85679924 -65103629 - L2 LINE L2 -92 3180 3027 180 325 237 0 chr11 85679939 85680053 -65103500 - MIR SINE MIR -22 240 100 826 260 39 5 chr11 85680066 85680287 -65103266 - MIR SINE MIR -1 261 30 206 282 141 12 chr11 85680784 85680869 -65102684 + MIR SINE MIR 117 212 -50 216 318 0 16 chr11 85680947 85681010 -65102543 - MIR SINE MIR 0 262 201 2278 107 25 28 chr11 85681894 85682287 -65101266 - L1MA2 LINE L1 -1 6303 5912 230 300 60 60 chr11 85682728 85682828 -65100725 - MIR SINE MIR -90 118 19 22 0 0 0 chr11 85682828 85682850 -65100703 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 85683010 85683031 -65100522 + AT_rich Low_complexity Low_complexity 1 21 0 422 292 108 21 chr11 85684062 85684350 -65099203 + L1ME4a LINE L1 5684 5996 -125 406 297 87 68 chr11 85684499 85684718 -65098835 - MIR SINE MIR -18 244 22 732 217 114 0 chr11 85685021 85685187 -65098366 + MIR SINE MIR 74 258 -4 475 272 109 14 chr11 85686060 85686240 -65097313 + MIR SINE MIR 6 191 -65 235 269 215 46 chr11 85686451 85686581 -65096972 - MIR3 SINE MIR -55 153 2 316 331 52 0 chr11 85686859 85687013 -65096540 - MIR SINE MIR 0 262 101 828 264 45 16 chr11 85688295 85688537 -65095016 - MIR SINE MIR -12 250 2 230 346 48 40 chr11 85688795 85689023 -65094530 + L2 LINE L2 2883 3112 -160 465 261 45 8 chr11 85689132 85689266 -65094287 + MIR SINE MIR 59 197 -65 1634 161 89 0 chr11 85690185 85690465 -65093088 - AluSx SINE Alu -7 305 1 492 215 18 167 chr11 85690586 85690814 -65092739 + MIR SINE MIR 48 241 -21 301 284 8 79 chr11 85690980 85691107 -65092446 + MIR SINE MIR 19 136 -72 428 255 176 25 chr11 85691887 85692087 -65091466 - MIR SINE MIR -12 250 18 209 252 65 98 chr11 85692818 85692941 -65090612 - MIR3 SINE MIR -23 185 67 491 361 34 61 chr11 85693184 85693511 -65090042 - L2 LINE L2 -1 3271 2954 349 269 101 63 chr11 85693568 85693872 -65089681 + L1ME LINE L1 5442 5757 -364 1055 141 36 0 chr11 85693964 85694156 -65089397 + SVA Other Other 445 643 -743 391 277 21 0 chr11 85694261 85694355 -65089198 - MIR SINE MIR -52 210 115 241 296 12 12 chr11 85694390 85694471 -65089082 - MIR SINE MIR -111 151 71 589 281 14 19 chr11 85694616 85694779 -65088774 + MIR SINE MIR 36 197 -61 392 256 24 32 chr11 85695814 85695939 -65087614 - MIR SINE MIR -27 235 112 234 286 0 14 chr11 85696291 85696361 -65087192 + L2 LINE L2 2988 3056 -216 236 216 20 0 chr11 85696504 85696555 -65086998 + L2 LINE L2 3217 3268 -4 420 227 45 23 chr11 85697032 85697120 -65086433 - L2 LINE L2 -1 3312 3223 188 323 167 0 chr11 85697105 85697201 -65086352 + MIR3 SINE MIR 14 125 -83 * 336 264 57 38 chr11 85697282 85697388 -65086165 + L2 LINE L2 3199 3306 -7 835 254 25 29 chr11 85697813 85698067 -65085486 + MIR SINE MIR 3 260 -2 188 237 17 17 chr11 85698683 85698742 -65084811 + MIR SINE MIR 99 157 -105 247 372 21 21 chr11 85698799 85698893 -65084660 - L2 LINE L2 -73 3199 3106 1000 253 56 4 chr11 85698933 85699166 -65084387 - MIR SINE MIR -5 257 13 314 281 0 0 chr11 85699168 85699250 -65084303 + MIR SINE MIR 172 253 -9 220 300 96 19 chr11 85699368 85699578 -65083975 - L2 LINE L2 -301 2971 2747 358 324 36 0 chr11 85700172 85700283 -65083270 + MIR SINE MIR 35 149 -113 280 258 31 10 chr11 85700817 85700914 -65082639 + MER20B DNA MER1_type 45 143 -640 860 191 16 48 chr11 85700986 85701174 -65082379 + LTR33 LTR ERVL 10 191 -330 963 188 135 33 chr11 85701181 85701536 -65082017 + MSTC LTR MaLR 1 428 0 215 308 39 64 chr11 85701613 85701769 -65081784 - L2 LINE L2 -241 3072 2921 2121 81 0 11 chr11 85701935 85702219 -65081334 - AluSg SINE Alu -29 281 1 397 221 143 50 chr11 85702587 85702727 -65080826 + MIR3 SINE MIR 56 208 0 213 309 202 0 chr11 85702899 85702983 -65080570 - L2 LINE L2 -1 3271 3171 432 37 0 0 chr11 85703246 85703300 -65080253 + (TG)n Simple_repeat Simple_repeat 2 55 0 198 295 54 36 chr11 85703314 85703426 -65080127 + L3 LINE CR1 931 1044 -533 260 182 52 26 chr11 85703542 85703619 -65079934 + L3 LINE CR1 1147 1225 -352 455 252 36 36 chr11 85703784 85703923 -65079630 + MIR3 SINE MIR 56 194 -14 515 343 68 0 chr11 85703952 85704188 -65079365 + L3 LINE CR1 1200 1451 -126 190 372 76 45 chr11 85704233 85704679 -65078874 + L2 LINE L2 2298 2757 -557 606 258 197 9 chr11 85704837 85705050 -65078503 + L2 LINE L2 2934 3186 -86 240 302 103 17 chr11 85705622 85705738 -65077815 + MIR SINE MIR 2 127 -135 779 317 28 4 chr11 85705758 85706007 -65077546 + MIR SINE MIR 6 260 -2 35 41 0 0 chr11 85706200 85706249 -65077304 + AT_rich Low_complexity Low_complexity 1 49 0 310 252 134 8 chr11 85706272 85706399 -65077154 - MIR SINE MIR -10 252 110 213 321 32 14 chr11 85706526 85706607 -65076946 - MIR SINE MIR -102 106 16 307 317 67 0 chr11 85706801 85706905 -65076648 - MIR SINE MIR -87 175 65 26 0 0 0 chr11 85707150 85707176 -65076377 + AT_rich Low_complexity Low_complexity 1 26 0 735 237 141 5 chr11 85707454 85707661 -65075892 + MIR SINE MIR 25 262 0 384 279 118 7 chr11 85707653 85707789 -65075764 - MIR SINE MIR -107 155 5 * 627 182 130 13 chr11 85708541 85708695 -65074858 + MIR SINE MIR 21 192 -70 631 272 33 11 chr11 85708812 85708992 -65074561 - MIR SINE MIR -15 247 64 802 285 102 34 chr11 85709108 85709462 -65074091 + MLT1K LTR MaLR 189 566 -22 386 296 144 0 chr11 85709659 85709784 -65073769 + L2 LINE L2 3128 3270 -2 272 310 0 58 chr11 85709867 85709954 -65073599 - L2 LINE L2 -3 3269 3188 384 305 102 30 chr11 85710581 85710791 -65072762 - MIR SINE MIR -24 238 17 249 337 77 6 chr11 85711527 85711696 -65071857 - L2 LINE L2 -10 3262 3082 208 349 0 15 chr11 85712657 85712723 -65070830 - L2 LINE L2 -20 3252 3188 803 227 29 0 chr11 85712800 85712972 -65070581 + MER45A DNA AcHobo 2 178 0 805 265 147 48 chr11 85713061 85713193 -65070360 + MLT1L LTR MaLR 131 248 -367 1812 144 26 48 chr11 85713193 85713505 -65070048 - AluSx SINE Alu -2 310 6 2371 106 0 3 chr11 85713514 85713825 -65069728 - AluSx SINE Alu -2 310 1 805 265 147 48 chr11 85713825 85714123 -65069430 + MLT1L LTR MaLR 255 615 0 306 321 102 5 chr11 85714150 85714337 -65069216 + MIR SINE MIR 57 261 -1 192 77 0 0 chr11 85714989 85715015 -65068538 + (TG)n Simple_repeat Simple_repeat 2 27 0 877 222 64 119 chr11 85715518 85715947 -65067606 + HAL1 LINE L1 2020 2418 -89 2302 98 14 0 chr11 85715947 85716242 -65067311 - AluSg SINE Alu -11 299 1 877 222 64 119 chr11 85716242 85716326 -65067227 + HAL1 LINE L1 2418 2505 -2 207 0 0 0 chr11 85717518 85717541 -65066012 + (TC)n Simple_repeat Simple_repeat 2 24 0 375 327 54 6 chr11 85718233 85718401 -65065152 + MIR SINE MIR 16 191 -71 226 229 16 0 chr11 85719798 85719859 -65063694 + MIR SINE MIR 79 140 -122 183 347 14 0 chr11 85720110 85720182 -65063371 + L2 LINE L2 2939 3011 -261 * 248 225 38 25 chr11 85720172 85720252 -65063301 + MIR SINE MIR 71 151 -111 493 281 58 50 chr11 85721367 85721518 -65062035 + MIR SINE MIR 1 156 -106 901 210 0 0 chr11 85721518 85721680 -65061873 + FRAM SINE Alu 2 163 -3 493 281 58 50 chr11 85721680 85721788 -65061765 + MIR SINE MIR 156 262 0 2243 99 30 15 chr11 85722305 85722637 -65060916 - MER1B DNA MER1_type 0 337 1 195 333 65 0 chr11 85722875 85722998 -65060555 + MIR SINE MIR 120 250 -12 235 230 96 67 chr11 85724091 85724226 -65059327 + MIR3 SINE MIR 67 205 -3 24 0 0 0 chr11 85724530 85724554 -65058999 + AT_rich Low_complexity Low_complexity 1 24 0 2831 16 0 0 chr11 85724667 85724972 -65058581 - AluYb8 SINE Alu -13 305 1 330 217 98 21 chr11 85725035 85725178 -65058375 - MIR SINE MIR -19 243 90 280 354 41 34 chr11 85725487 85725634 -65057919 + MIR3 SINE MIR 29 176 -32 296 177 48 0 chr11 85725931 85725993 -65057560 + MIR SINE MIR 112 176 -86 239 296 34 0 chr11 85726272 85726360 -65057193 - MIR SINE MIR -97 165 75 512 217 76 32 chr11 85727036 85727193 -65056360 - MER103 DNA DNA -1 165 2 1544 116 141 2 chr11 85727244 85727629 -65055924 + LTR54 LTR ERV1 1 510 0 437 212 10 10 chr11 85727928 85728027 -65055526 - L1MD2 LINE L1 -16 6343 6245 222 394 18 12 chr11 85729091 85729256 -65054297 + L2 LINE L2 2893 3058 -214 216 289 93 10 chr11 85729315 85729412 -65054141 + MIR SINE MIR 135 239 -23 298 314 25 16 chr11 85729486 85729607 -65053946 + L2 LINE L2 3151 3272 0 801 233 103 32 chr11 85729672 85730020 -65053533 - L1ME4a LINE L1 -38 6083 5711 527 232 36 63 chr11 85730755 85730978 -65052575 + MIR SINE MIR 18 228 -34 182 290 14 0 chr11 85730988 85731057 -65052496 - L2 LINE L2 -330 2942 2873 235 114 0 0 chr11 85731514 85731549 -65052004 - L2 LINE L2 -16 3256 3222 1242 133 13 51 chr11 85731669 85731794 -65051759 + MER30 DNA MER1_type 1 114 -116 1181 190 9 101 chr11 85731794 85732121 -65051432 + AluJb SINE Alu 3 299 -3 1242 133 13 51 chr11 85732121 85732229 -65051324 + MER30 DNA MER1_type 114 225 -5 285 114 0 0 chr11 85732661 85732705 -65050848 + Alu SINE Alu 256 299 -3 * 795 133 0 16 chr11 85732690 85732818 -65050735 + MER30 DNA MER1_type 105 230 0 307 313 39 52 chr11 85732957 85733187 -65050366 - MIR SINE MIR -30 232 6 282 318 62 0 chr11 85734278 85734407 -65049146 - MIR3 SINE MIR -18 190 54 572 278 42 14 chr11 85734957 85735169 -65048384 - MIR SINE MIR -14 248 31 13791 128 15 6 chr11 85735359 85737406 -65046147 + Tigger1 DNA MER2_type 3 2067 -351 198 260 0 0 chr11 85737504 85737554 -65045999 - MIR SINE MIR -78 130 81 1727 216 124 61 chr11 85738317 85738619 -65044934 - L1MC4 LINE L1 0 8042 7761 2386 61 10 3 chr11 85738619 85738915 -65044638 - AluY SINE Alu -13 298 1 1727 216 124 61 chr11 85738915 85739322 -65044231 - L1MC4 LINE L1 -281 7761 7288 210 294 141 6 chr11 85739371 85739534 -65044019 + L2 LINE L2 1815 1999 -1315 * 278 295 57 9 chr11 85739527 85739632 -65043921 + L2 LINE L2 3204 3313 0 242 281 0 0 chr11 85739646 85739703 -65043850 + MIR SINE MIR 19 75 -133 251 190 0 0 chr11 85740792 85740850 -65042703 + MIR SINE MIR 68 125 -137 558 223 47 47 chr11 85740895 85741110 -65042443 - MIR SINE MIR -12 250 36 207 194 0 0 chr11 85741573 85741609 -65041944 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1748 170 28 75 chr11 85741715 85742104 -65041449 - MLT1A2 LTR MaLR -1 373 3 182 178 0 44 chr11 85742365 85742410 -65041143 + L2 LINE L2 3267 3309 -4 242 256 135 0 chr11 85742994 85743150 -65040403 - MIR SINE MIR -41 221 45 200 370 54 0 chr11 85743695 85743787 -65039766 - MIR SINE MIR -6 256 160 1184 99 32 77 chr11 85743866 85744087 -65039466 - MER2 DNA MER2_type -134 211 1 358 143 71 0 chr11 85744087 85744157 -65039396 - MIR SINE MIR -108 154 80 966 243 74 72 chr11 85744634 85745107 -65038446 - MER113 DNA MER1_type? -47 474 1 355 313 46 0 chr11 85745113 85745244 -65038309 - MIR3 SINE MIR -54 154 18 903 231 148 14 chr11 85746927 85747217 -65036336 + MER46C DNA MER2_type 1 329 -9 207 0 0 0 chr11 85747551 85747574 -65035979 + (CAA)n Simple_repeat Simple_repeat 2 24 0 269 314 25 16 chr11 85748243 85748364 -65035189 + MIR SINE MIR 28 149 -113 248 299 201 6 chr11 85749194 85749358 -65034195 - MIR SINE MIR -66 196 1 432 259 35 0 chr11 85750303 85750419 -65033134 - MIR SINE MIR -73 135 16 290 289 57 71 chr11 85750812 85751023 -65032530 + L2 LINE L2 2915 3122 -150 191 260 0 0 chr11 85751157 85751207 -65032346 - L2 LINE L2 -13 3259 3210 263 326 101 0 chr11 85751211 85751340 -65032213 - MIR SINE MIR -95 167 26 188 271 0 0 chr11 85751969 85752017 -65031536 + L2 LINE L2 3209 3256 -16 191 307 114 0 chr11 85752889 85753029 -65030524 + MIR3 SINE MIR 43 198 -10 303 267 0 0 chr11 85753263 85753338 -65030215 + L2 LINE L2 3229 3303 -10 2131 113 3 26 chr11 85753979 85754281 -65029272 - AluSg SINE Alu -13 297 3 2346 109 0 0 chr11 85754283 85754587 -65028966 - AluSc SINE Alu -5 304 1 218 336 71 44 chr11 85755022 85755122 -65028431 + MIR SINE MIR 26 122 -140 1908 127 20 7 chr11 85755122 85755414 -65028139 - AluSx SINE Alu -16 296 1 218 336 71 44 chr11 85755414 85755539 -65028014 + MIR SINE MIR 122 257 -5 535 259 7 124 chr11 85756310 85756584 -65026969 + MIR SINE MIR 18 259 -3 348 268 108 105 chr11 85757217 85757568 -65025985 + L2 LINE L2 2920 3271 -1 2007 161 19 35 chr11 85758169 85758536 -65025017 + MSTB LTR MaLR 1 361 -65 1149 204 0 5 chr11 85758537 85758748 -65024805 - AluJb SINE Alu -17 295 86 359 164 0 15 chr11 85758748 85758815 -65024738 + MSTB LTR MaLR 367 432 0 285 237 0 0 chr11 85758953 85759012 -65024541 - MIR SINE MIR -62 146 88 343 331 52 9 chr11 85759149 85759382 -65024171 + MIR SINE MIR 16 256 -6 331 253 123 45 chr11 85761094 85761248 -65022305 + L1ME4a LINE L1 5942 6107 -14 28 0 0 0 chr11 85761241 85761269 -65022284 + AT_rich Low_complexity Low_complexity 1 28 0 * 819 226 0 0 chr11 85761269 85761424 -65022129 - FAM SINE Alu -19 166 12 2356 104 0 3 chr11 85761539 85761848 -65021705 - AluSc SINE Alu -1 308 1 317 245 108 84 chr11 85761906 85762241 -65021312 + L1ME3A LINE L1 5599 5941 -180 22 0 0 0 chr11 85762712 85762734 -65020819 + AT_rich Low_complexity Low_complexity 1 22 0 4694 165 25 18 chr11 85762913 85763797 -65019756 - L1MB8 LINE L1 -9 6169 5280 458 221 104 43 chr11 85763813 85763976 -65019577 - L2 LINE L2 -14 3299 3127 1346 50 0 0 chr11 85764096 85764276 -65019277 + (G)n Simple_repeat Simple_repeat 1 180 0 204 115 0 0 chr11 85764297 85764323 -65019230 + (G)n Simple_repeat Simple_repeat 1 26 0 867 302 26 4 chr11 85764361 85764626 -65018927 - L2 LINE L2 -234 3079 2809 455 262 43 7 chr11 85764864 85765005 -65018548 - MIR SINE MIR -70 192 47 186 323 10 42 chr11 85765101 85765197 -65018356 + MIR SINE MIR 158 250 -12 215 154 26 0 chr11 85765218 85765257 -65018296 + CT-rich Low_complexity Low_complexity 2 41 0 1541 139 135 0 chr11 85765259 85765525 -65018028 - AluSx SINE Alu 0 302 1 228 35 0 0 chr11 85766130 85766159 -65017394 + (CA)n Simple_repeat Simple_repeat 2 30 0 258 353 88 0 chr11 85766368 85766538 -65017015 - MIR SINE MIR -11 251 67 235 337 33 0 chr11 85766680 85766772 -65016781 - MIR SINE MIR -74 134 40 288 185 15 0 chr11 85766894 85766959 -65016594 + L1ME3A LINE L1 6105 6170 0 1597 196 64 8 chr11 85767530 85767888 -65015665 - MLT1C LTR MaLR -55 412 35 370 260 150 0 chr11 85767965 85768092 -65015461 - MIR SINE MIR -116 146 1 6031 61 1 0 chr11 85768146 85768946 -65014607 + L1PA7 LINE L1 5394 6194 0 289 312 159 0 chr11 85768961 85769099 -65014454 - MIR SINE MIR -67 195 36 272 352 56 31 chr11 85769858 85770054 -65013499 - L2 LINE L2 -96 3176 2976 222 306 37 52 chr11 85770150 85770284 -65013269 - L2 LINE L2 -303 2969 2838 234 340 28 21 chr11 85770350 85770491 -65013062 + MIR3 SINE MIR 48 189 -19 203 326 71 20 chr11 85770512 85770610 -65012943 - MIR SINE MIR -62 200 98 543 244 83 52 chr11 85770756 85770986 -65012567 - MIR SINE MIR -13 249 13 597 237 101 6 chr11 85771145 85771331 -65012222 + MIR SINE MIR 2 194 -58 368 353 106 5 chr11 85771361 85771568 -65011985 - MIR SINE MIR -12 250 23 269 197 141 0 chr11 85771937 85772008 -65011545 + MLT1L LTR MaLR 1 81 -534 343 170 0 106 chr11 85772213 85772307 -65011246 + MLT1L LTR MaLR 496 579 -36 219 343 29 19 chr11 85772735 85772840 -65010713 - L2 LINE L2 -28 3244 3139 298 240 170 10 chr11 85773752 85773852 -65009701 - L2 LINE L2 0 3313 3198 311 271 56 0 chr11 85774374 85774481 -65009072 + MIR SINE MIR 35 147 -61 404 318 45 21 chr11 85774632 85774869 -65008684 + MIR SINE MIR 13 256 -6 312 210 30 70 chr11 85775113 85775213 -65008340 - L3 LINE CR1 -132 1445 1350 1040 174 27 45 chr11 85775260 85775295 -65008258 + MIR SINE MIR 2 36 -226 672 220 23 64 chr11 85775295 85775513 -65008040 - MER3 DNA MER1_type 0 209 1 1040 174 27 45 chr11 85775513 85775701 -65007852 + MIR SINE MIR 36 221 -41 562 286 73 34 chr11 85775842 85776199 -65007354 - L1ME LINE L1 -480 5641 5271 21 0 0 0 chr11 85776275 85776296 -65007257 + AT_rich Low_complexity Low_complexity 1 21 0 266 312 99 25 chr11 85776828 85777030 -65006523 - MIR SINE MIR -11 251 35 2039 125 3 32 chr11 85777105 85777418 -65006135 - AluSx SINE Alu -8 304 1 427 312 29 6 chr11 85777434 85777604 -65005949 + MIR SINE MIR 88 261 -1 1429 205 99 49 chr11 85777722 85778157 -65005396 + L1ME3 LINE L1 5676 6133 -29 464 294 61 10 chr11 85778262 85778459 -65005094 - MIR SINE MIR 0 262 56 1936 235 82 12 chr11 85778524 85779027 -65004526 + MLT1F LTR MaLR 5 542 0 1701 163 0 35 chr11 85779224 85779513 -65004040 - AluJb SINE Alu -25 287 9 350 368 22 5 chr11 85779989 85780212 -65003341 - L3b LINE CR1 -202 1381 1155 1812 156 3 39 chr11 85780313 85780620 -65002933 + AluJb SINE Alu 1 296 -16 341 246 123 56 chr11 85780685 85780864 -65002689 - MIR3 SINE MIR -6 202 12 499 255 0 20 chr11 85781021 85781174 -65002379 + L1MC4a LINE L1 5785 5934 -1874 29 47 0 0 chr11 85781318 85781361 -65002192 + AT_rich Low_complexity Low_complexity 1 43 0 285 263 10 61 chr11 85781658 85781757 -65001796 + MER20B DNA MER1_type 63 156 -627 287 288 72 32 chr11 85782069 85782194 -65001359 - MIR SINE MIR -111 151 22 234 264 16 4 chr11 85783311 85783450 -65000103 + MIR SINE MIR 71 256 -6 1872 291 91 45 chr11 85783841 85785216 -64998337 - L1MEc LINE L1 -4921 1475 38 258 269 15 0 chr11 85785321 85785388 -64998165 - L2 LINE L2 -50 3222 3155 189 369 54 39 chr11 85785404 85785534 -64998019 - L2 LINE L2 -5 3267 3136 295 248 68 38 chr11 85785782 85785915 -64997638 - L2 LINE L2 -459 2855 2719 455 308 29 13 chr11 85786295 85786468 -64997085 + MIR SINE MIR 4 181 -61 1160 259 144 25 chr11 85786645 85787131 -64996422 + MLT1H1 LTR MaLR 10 553 -2 244 260 0 0 chr11 85787684 85787734 -64995819 + MIR SINE MIR 201 250 -12 1679 166 20 107 chr11 85788291 85788694 -64994859 + MLT1A2 LTR MaLR 4 371 -3 418 304 43 27 chr11 85788738 85788922 -64994631 + MIR SINE MIR 6 192 -70 450 316 13 18 chr11 85788963 85789188 -64994365 + L1M4 LINE L1 17 240 -6302 2337 229 54 59 chr11 85789679 85789773 -64993780 + L1M4 LINE L1 870 963 -5862 2237 84 0 11 chr11 85789773 85790083 -64993470 + AluY SINE Alu 1 307 0 2337 229 54 59 chr11 85790083 85791290 -64992263 + L1M4 LINE L1 963 2652 -4173 2231 119 0 3 chr11 85791290 85791585 -64991968 + AluSx SINE Alu 1 294 -18 2337 229 54 59 chr11 85791585 85791759 -64991794 + L1M4 LINE L1 2652 2825 -4000 * 11227 219 74 29 chr11 85791758 85796523 -64987030 + L1PA13 LINE L1 21 5023 -1774 346 212 12 0 chr11 85796523 85796608 -64986945 + L1M4 LINE L1 3260 3345 -3299 303 306 29 29 chr11 85796998 85797168 -64986385 - MIR SINE MIR -12 250 81 1991 198 27 25 chr11 85797344 85797749 -64985804 + MLT2D LTR ERVL 1 406 -8 253 295 9 62 chr11 85797888 85798000 -64985553 - MIR SINE MIR -62 146 41 1184 262 52 50 chr11 85799016 85799612 -64983941 - L1ME4a LINE L1 -176 5945 5349 555 289 39 0 chr11 85800159 85800339 -64983214 - MIR3 SINE MIR -4 204 18 2479 110 22 6 chr11 85800365 85800721 -64982832 + THE1B LTR MaLR 1 362 -2 2352 83 63 20 chr11 85800998 85801346 -64982207 - THE1B LTR MaLR -1 363 1 413 236 27 9 chr11 85801430 85801540 -64982013 + MIR SINE MIR 34 145 -63 219 243 311 29 chr11 85802960 85803063 -64980490 - MIR SINE MIR -15 247 116 231 284 134 0 chr11 85804146 85804280 -64979273 + MER117 DNA MER1_type 44 195 -2 389 246 125 69 chr11 85804334 85804683 -64978870 + L2 LINE L2 2724 3313 0 374 204 384 17 chr11 85805676 85805848 -64977705 - MIR SINE MIR -15 247 13 303 28 0 0 chr11 85806024 85806060 -64977493 + (TG)n Simple_repeat Simple_repeat 2 37 0 1112 284 144 21 chr11 85806210 85807149 -64976404 - L2 LINE L2 -24 3289 2234 608 248 73 15 chr11 85807392 85807598 -64975955 + MIR SINE MIR 17 234 -28 327 279 138 28 chr11 85807971 85808254 -64975299 + L1MC4a LINE L1 5883 6196 -1612 818 199 53 12 chr11 85808340 85808511 -64975042 + MER45A DNA AcHobo 1 178 0 552 286 0 0 chr11 85808728 85808861 -64974692 - MER94 DNA DNA 0 134 2 198 150 0 0 chr11 85808991 85809031 -64974522 + (CA)n Simple_repeat Simple_repeat 1 40 0 358 235 0 98 chr11 85809367 85809499 -64974054 - MIR3 SINE MIR -9 199 81 191 289 0 0 chr11 85810055 85810100 -64973453 + L2 LINE L2 3004 3048 -224 252 333 73 8 chr11 85810172 85810295 -64973258 - L2 LINE L2 0 3272 3142 294 308 48 19 chr11 85811540 85811644 -64971909 + L2 LINE L2 3158 3264 -8 670 233 77 29 chr11 85811892 85812232 -64971321 - LTR16C LTR ERVL -7 484 50 232 318 0 0 chr11 85812349 85812412 -64971141 + MIR3 SINE MIR 145 207 -1 471 313 31 31 chr11 85812688 85812851 -64970702 - MIR SINE MIR -14 248 86 318 189 16 8 chr11 85813258 85813380 -64970173 + (ATG)n Simple_repeat Simple_repeat 1 123 0 575 292 54 33 chr11 85813388 85813628 -64969925 - MIR SINE MIR -6 256 12 2210 97 0 7 chr11 85813826 85814126 -64969427 + AluSx SINE Alu 1 298 -14 273 292 17 0 chr11 85814525 85814598 -64968955 - MIR SINE MIR -89 119 45 255 286 75 62 chr11 85814693 85814854 -64968699 + MIR3 SINE MIR 20 182 -26 252 247 78 40 chr11 85815345 85815462 -64968091 - MIR SINE MIR -62 146 23 206 309 62 0 chr11 85815703 85815784 -64967769 + L2 LINE L2 3137 3222 -50 357 24 0 0 chr11 85815809 85815851 -64967702 + (TGAA)n Simple_repeat Simple_repeat 2 43 0 25 0 0 0 chr11 85815927 85815952 -64967601 + AT_rich Low_complexity Low_complexity 1 25 0 400 250 48 48 chr11 85816078 85816202 -64967351 - MIR SINE MIR -63 199 76 331 319 69 0 chr11 85817143 85817259 -64966294 - MIR SINE MIR -14 248 125 311 295 67 34 chr11 85817823 85817972 -64965581 - MIR3 SINE MIR 0 208 55 412 291 44 13 chr11 85818383 85818541 -64965012 - MIR SINE MIR -37 225 63 789 246 134 13 chr11 85818570 85818794 -64964759 + MIR SINE MIR 12 262 0 1327 221 31 82 chr11 85818861 85819251 -64964302 - LTR16A LTR ERVL 0 450 81 366 300 21 21 chr11 85819374 85819514 -64964039 + MER5A DNA MER1_type 50 189 0 24 32 0 0 chr11 85819600 85819631 -64963922 + AT_rich Low_complexity Low_complexity 1 31 0 278 264 81 11 chr11 85819743 85819830 -64963723 - L2 LINE L2 -49 3264 3172 424 309 72 11 chr11 85820713 85820894 -64962659 - MIR SINE MIR -14 248 57 223 264 28 0 chr11 85821468 85821540 -64962013 + GA-rich Low_complexity Low_complexity 1 74 0 443 286 121 14 chr11 85821568 85821708 -64961845 + L2 LINE L2 3112 3266 -6 197 260 0 0 chr11 85821740 85821790 -64961763 + L2 LINE L2 3217 3266 -6 238 358 0 0 chr11 85822077 85822158 -64961395 + L2 LINE L2 3192 3272 0 861 234 68 5 chr11 85822345 85822550 -64961003 + MER20 DNA MER1_type 1 218 -1 449 275 94 6 chr11 85822869 85823029 -64960524 - MIR3 SINE MIR -16 192 19 303 254 0 0 chr11 85823761 85823820 -64959733 + L2 LINE L2 3204 3262 -10 218 286 183 16 chr11 85823956 85824082 -64959471 - MIR SINE MIR -7 255 109 303 184 20 10 chr11 85824589 85824659 -64958894 + MIR SINE MIR 114 183 -79 30 0 0 0 chr11 85825123 85825153 -64958400 + AT_rich Low_complexity Low_complexity 1 30 0 199 246 135 25 chr11 85825662 85825781 -64957772 + MIR SINE MIR 13 143 -65 27 0 0 0 chr11 85825880 85825907 -64957646 + AT_rich Low_complexity Low_complexity 1 27 0 359 199 15 103 chr11 85826029 85826165 -64957388 - L1ME4a LINE L1 -3 6118 5995 299 209 306 15 chr11 85826638 85826772 -64956781 - MER5A DNA MER1_type -13 176 4 2325 82 0 16 chr11 85827278 85827593 -64955960 + AluY SINE Alu 1 310 -1 320 229 31 104 chr11 85828657 85828753 -64954800 + L2 LINE L2 3184 3272 0 214 338 172 7 chr11 85828770 85828921 -64954632 + L2 LINE L2 2227 2402 -912 299 232 37 24 chr11 85829492 85829574 -64953979 - MER90 LTR ERV1 -16 559 477 1319 55 0 0 chr11 85830193 85830356 -64953197 + L1PA8 LINE L1 6005 6167 -5 252 274 44 53 chr11 85830371 85830484 -64953069 + MIR SINE MIR 151 262 0 289 281 70 0 chr11 85830723 85830837 -64952716 + MIR SINE MIR 87 208 -54 420 300 25 17 chr11 85831362 85831482 -64952071 - MER5A DNA MER1_type -4 185 65 2082 126 0 0 chr11 85831618 85831912 -64951641 - AluSx SINE Alu -18 294 1 330 302 101 16 chr11 85831920 85832049 -64951504 + MIR SINE MIR 109 248 -14 203 125 62 104 chr11 85832375 85832423 -64951130 - L2 LINE L2 0 3272 3227 226 330 95 33 chr11 85832704 85832864 -64950689 + L2 LINE L2 2259 2444 -870 2174 160 11 6 chr11 85832864 85833227 -64950326 + MLT1A1 LTR MaLR 1 365 0 226 330 95 33 chr11 85833227 85833339 -64950214 + L2 LINE L2 2444 2548 -766 237 289 84 12 chr11 85833404 85833487 -64950066 + L2 LINE L2 2684 2772 -542 266 303 53 15 chr11 85833821 85833953 -64949600 + MLT1J2 LTR MaLR 5 141 -309 491 210 112 24 chr11 85833990 85834149 -64949404 + MLT1J1 LTR MaLR 266 501 -10 213 246 18 0 chr11 85834214 85834271 -64949282 + L2 LINE L2 3256 3313 0 266 308 85 23 chr11 85835174 85835304 -64948249 + MIR SINE MIR 49 186 -76 691 225 20 6 chr11 85835477 85835665 -64947888 - L1MB5 LINE L1 -3 6177 5983 227 275 55 18 chr11 85835857 85835966 -64947587 - L2 LINE L2 -404 2910 2798 1709 213 63 16 chr11 85836978 85837424 -64946129 + MLT1C LTR MaLR 1 467 0 304 67 22 0 chr11 85837663 85837708 -64945845 - MADE1 DNA Mariner -34 46 1 350 336 105 38 chr11 85838228 85838466 -64945087 + MIR SINE MIR 7 260 -2 2308 217 27 17 chr11 85838635 85839202 -64944351 + MER90 LTR ERV1 1 614 0 221 341 99 0 chr11 85839465 85839556 -64943997 - L3 LINE CR1 -11 1566 1467 181 265 61 51 chr11 85839591 85839689 -64943864 + L2 LINE L2 3136 3234 -38 2298 215 32 32 chr11 85840051 85840586 -64942967 + MER68 LTR ERV1 4 538 -24 227 286 43 14 chr11 85841538 85841608 -64941945 + MIR SINE MIR 36 107 -101 1166 213 0 40 chr11 85841702 85841955 -64941598 - MIR SINE MIR -2 260 18 320 306 99 8 chr11 85842083 85842204 -64941349 + MIR SINE MIR 21 152 -110 5594 83 9 3 chr11 85842210 85843018 -64940535 - L1PA11 LINE L1 -1 6173 5310 252 344 78 44 chr11 85843951 85844131 -64939422 + L2 LINE L2 2724 2909 -405 228 226 0 22 chr11 85844798 85844848 -64938705 + MIR SINE MIR 56 105 -103 702 246 225 0 chr11 85845050 85845290 -64938263 - AluYa8 SINE Alu -6 294 1 21 0 0 0 chr11 85845328 85845349 -64938204 + AT_rich Low_complexity Low_complexity 1 21 0 1994 113 17 3 chr11 85845393 85845686 -64937867 + AluSq SINE Alu 1 297 -16 260 181 75 154 chr11 85845688 85845792 -64937761 + MER112 DNA MER1_type 82 166 -94 1938 147 0 0 chr11 85845792 85846084 -64937469 - AluSx SINE Alu -18 294 3 260 181 75 154 chr11 85846084 85846167 -64937386 + MER112 DNA MER1_type 166 254 -6 538 231 50 91 chr11 85846171 85846370 -64937183 - MIR SINE MIR -52 210 20 240 231 48 96 chr11 85846415 85846519 -64937034 - MIR SINE MIR -74 134 36 1475 255 133 26 chr11 85847817 85848477 -64935076 + L2 LINE L2 2576 3307 -6 2355 69 3 7 chr11 85848993 85849297 -64934256 + AluY SINE Alu 1 303 -8 372 295 6 85 chr11 85849302 85849481 -64934072 + MIR3 SINE MIR 26 192 -16 358 351 0 8 chr11 85849972 85850103 -64933450 + L2 LINE L2 2888 3017 -255 797 208 66 0 chr11 85850313 85850510 -64933043 - L1MB3 LINE L1 -2 6181 5972 436 235 27 67 chr11 85850517 85850666 -64932887 - MIR3 SINE MIR -63 145 3 234 279 137 39 chr11 85851391 85851545 -64932008 + MIR SINE MIR 28 209 -53 377 232 32 11 chr11 85851804 85851899 -64931654 + MIR SINE MIR 60 156 -106 659 244 66 10 chr11 85852478 85852675 -64930878 + MIR SINE MIR 19 226 -36 1864 150 10 0 chr11 85852698 85852992 -64930561 - AluSx SINE Alu -15 297 1 729 181 36 42 chr11 85853180 85853346 -64930207 - MER103 DNA DNA 0 166 2 317 388 0 0 chr11 85853395 85853498 -64930055 - MIR3 SINE MIR -48 160 58 1768 110 29 4 chr11 85854692 85854973 -64928580 - L1MA7 LINE L1 0 6291 6004 593 326 38 66 chr11 85855826 85856222 -64927331 + L2 LINE L2 2884 3268 -4 232 329 131 15 chr11 85856788 85856925 -64926628 - L2 LINE L2 -40 3232 3080 184 284 104 0 chr11 85857199 85857266 -64926287 + L2 LINE L2 3183 3256 -16 498 252 0 0 chr11 85857273 85857518 -64926035 + (CA)n Simple_repeat Simple_repeat 1 245 0 316 228 94 67 chr11 85858523 85858672 -64924881 + MIR SINE MIR 32 184 -78 454 251 246 14 chr11 85858915 85859122 -64924431 - MIR SINE MIR 0 262 8 223 239 0 90 chr11 85859288 85859355 -64924198 + MIR SINE MIR 167 227 -35 212 213 43 0 chr11 85859960 85860007 -64923546 + L2 LINE L2 3219 3267 -5 323 250 107 43 chr11 85860020 85860160 -64923393 - MIR SINE MIR -6 256 108 3672 133 2 7 chr11 85910481 85911391 -64872162 + L1PB1 LINE L1 4885 5790 -361 544 78 6 78 chr11 85911392 85911558 -64871995 + (TA)n Simple_repeat Simple_repeat 2 155 0 2208 139 6 0 chr11 85911573 85911932 -64871621 + L1PB1 LINE L1 5785 6145 -6 10771 80 15 0 chr11 85911944 85913406 -64870147 + HERVL LTR ERVL 3912 5395 -259 360 270 137 52 chr11 85913506 85913717 -64869836 - L3 LINE CR1 -72 1505 1277 4946 172 32 45 chr11 85913785 85915068 -64868485 + L1MD2 LINE L1 5101 6359 0 1563 75 0 24 chr11 85915080 85915292 -64868261 + AluY SINE Alu 1 207 -104 384 234 56 0 chr11 85915392 85915499 -64868054 + MIR SINE MIR 137 249 -13 249 280 95 60 chr11 85915911 85916143 -64867410 + MLT1H LTR MaLR 3 242 -300 516 310 29 23 chr11 85916172 85916346 -64867207 + MLT1H LTR MaLR 375 549 0 219 208 0 0 chr11 85916346 85916394 -64867159 - MIR SINE MIR -103 159 112 1976 140 3 7 chr11 85916426 85916734 -64866819 + AluSx SINE Alu 1 307 -5 301 277 80 36 chr11 85916890 85917002 -64866551 + L2 LINE L2 3155 3271 -1 355 239 52 48 chr11 85917020 85917144 -64866409 - MIR SINE MIR -73 135 32 671 246 94 5 chr11 85918298 85918501 -64865052 + MIR SINE MIR 9 229 -33 195 266 38 63 chr11 85918642 85918721 -64864832 - L2 LINE L2 0 3272 3196 198 105 0 0 chr11 85918805 85918836 -64864717 + MIR SINE MIR 114 143 -119 248 274 113 28 chr11 85919714 85919820 -64863733 - MIR SINE MIR -104 158 44 360 312 9 0 chr11 85919941 85920050 -64863503 - MIR SINE MIR -67 141 32 434 286 61 0 chr11 85920366 85920544 -64863009 - MIR SINE MIR -57 205 17 311 321 0 0 chr11 85921215 85921299 -64862254 - L2 LINE L2 0 3313 3230 196 268 56 56 chr11 85921354 85921425 -64862128 + L2 LINE L2 2687 2757 -557 447 240 226 7 chr11 85921443 85921589 -64861964 + MER5A DNA MER1_type 9 186 -3 213 247 148 12 chr11 85922043 85922124 -64861429 - L2 LINE L2 -52 3220 3129 272 296 0 12 chr11 85922572 85922653 -64860900 - L2 LINE L2 0 3272 3193 265 289 134 0 chr11 85922713 85922810 -64860743 + MIR SINE MIR 37 146 -62 369 222 34 13 chr11 85923074 85923177 -64860376 + MLT1J LTR MaLR 28 180 -305 970 186 34 29 chr11 85923797 85924001 -64859552 - MER3 DNA MER1_type -4 205 1 631 340 43 4 chr11 85924135 85924370 -64859183 - MIR SINE MIR -10 252 9 397 300 125 0 chr11 85925082 85925242 -64858311 - MIR SINE MIR -74 188 9 544 309 94 13 chr11 85925922 85926155 -64857398 + MIR SINE MIR 1 252 -10 345 140 0 0 chr11 85926801 85926858 -64856695 + (CA)n Simple_repeat Simple_repeat 1 57 0 331 256 139 36 chr11 85926894 85927089 -64856464 - MIR SINE MIR -1 261 45 343 320 22 2 chr11 85928514 85928666 -64854887 + MIR SINE MIR 16 169 -62 476 260 130 7 chr11 85928735 85928889 -64854664 + MIR SINE MIR 34 206 -56 309 301 71 0 chr11 85929999 85930112 -64853441 + MIR SINE MIR 123 243 -19 485 335 0 19 chr11 85930393 85930554 -64852999 + L2 LINE L2 3113 3270 -2 27 29 0 0 chr11 85931115 85931149 -64852404 + AT_rich Low_complexity Low_complexity 1 34 0 798 285 11 81 chr11 85931826 85932077 -64851476 + MIR SINE MIR 7 242 -20 243 263 21 84 chr11 85932115 85932210 -64851343 + L3b LINE CR1 1298 1386 -197 275 282 14 0 chr11 85932459 85932530 -64851023 + MIR SINE MIR 169 240 -22 799 156 17 139 chr11 85932599 85932837 -64850716 + MER3 DNA MER1_type 1 209 0 415 182 68 97 chr11 85933451 85933627 -64849926 - MER104 DNA Tc2 -4 176 6 575 292 81 28 chr11 85933880 85934164 -64849389 + L2 LINE L2 2929 3227 -86 600 265 95 57 chr11 85934196 85934671 -64848882 - L1ME4a LINE L1 -48 6073 5581 612 281 62 5 chr11 85935931 85936123 -64847430 - MIR SINE MIR -29 233 31 434 318 72 21 chr11 85936234 85936470 -64847083 + MIR SINE MIR 8 255 -7 646 307 11 6 chr11 85936524 85936700 -64846853 - MIR3 SINE MIR -21 187 11 974 234 20 32 chr11 85936866 85937114 -64846439 - MIR SINE MIR -16 246 2 406 308 109 16 chr11 85937545 85937743 -64845810 - MIR SINE MIR -12 250 35 464 224 112 13 chr11 85937750 85937902 -64845651 + L1MC4 LINE L1 7159 7325 -717 2096 151 21 6 chr11 85937923 85938272 -64845281 + MLT2C1 LTR ERVL 1 478 -42 260 222 28 14 chr11 85938280 85938352 -64845201 + (TA)n Simple_repeat Simple_repeat 2 74 0 372 232 121 0 chr11 85938392 85938491 -64845062 + L1MC4a LINE L1 7273 7383 -425 237 132 38 57 chr11 85938672 85938725 -64844828 + CT-rich Low_complexity Low_complexity 1 52 0 233 328 133 26 chr11 85939337 85939532 -64844021 + MIR SINE MIR 28 243 -19 721 209 88 22 chr11 85939540 85939722 -64843831 + MIR SINE MIR 7 200 -62 196 363 29 20 chr11 85939823 85939925 -64843628 + L2 LINE L2 2980 3082 -190 2179 127 29 66 chr11 85940829 85941131 -64842422 + THE1B LTR MaLR 1 289 -75 2046 107 0 0 chr11 85941131 85941451 -64842102 + AluY SINE Alu 1 320 0 2179 127 29 66 chr11 85941451 85941525 -64842028 + THE1B LTR MaLR 289 364 0 197 349 66 0 chr11 85942190 85942256 -64841297 + MIR3 SINE MIR 2 74 -134 260 274 27 14 chr11 85942256 85942329 -64841224 + MER91A DNA MER1_type 1 74 -122 213 262 0 0 chr11 85943094 85943136 -64840417 + G-rich Low_complexity Low_complexity 5 46 0 302 0 26 0 chr11 85943258 85943296 -64840257 + (TG)n Simple_repeat Simple_repeat 1 39 0 248 254 0 0 chr11 85944061 85944124 -64839429 + L1ME4a LINE L1 5868 5930 -191 786 169 104 7 chr11 85944433 85944587 -64838966 + MER45A DNA AcHobo 8 176 -2 191 348 59 17 chr11 85944695 85944813 -64838740 + L3 LINE CR1 1141 1263 -314 * 526 249 129 50 chr11 85944784 85945025 -64838528 - L2 LINE L2 -8 3305 3046 224 221 244 15 chr11 85945346 85945477 -64838076 + L2 LINE L2 2136 2296 -1018 213 258 16 0 chr11 85945603 85945665 -64837888 - MIR SINE MIR -128 134 72 598 263 22 0 chr11 85946137 85946274 -64837279 - MIR SINE MIR -110 152 13 399 297 124 24 chr11 85946604 85946813 -64836740 + MIR SINE MIR 33 262 0 198 103 0 0 chr11 85946883 85946912 -64836641 + (CAT)n Simple_repeat Simple_repeat 2 30 0 390 281 0 0 chr11 85947589 85947678 -64835875 + MIR SINE MIR 60 148 -114 358 323 59 59 chr11 85947856 85948042 -64835511 - MIR SINE MIR -10 252 67 342 299 11 96 chr11 85948151 85948246 -64835307 - MIR SINE MIR -34 228 153 3474 166 8 8 chr11 85948246 85948873 -64834680 - L1MB3 LINE L1 -8 6175 5549 342 299 11 96 chr11 85948873 85948954 -64834599 - MIR SINE MIR -109 153 67 403 324 14 28 chr11 85948992 85949137 -64834416 + MER5A DNA MER1_type 2 144 -45 234 277 0 0 chr11 85949200 85949265 -64834288 + (TTA)n Simple_repeat Simple_repeat 3 67 0 880 220 115 0 chr11 85950755 85950955 -64832598 - MIR SINE MIR -25 237 15 386 273 144 0 chr11 85950974 85951106 -64832447 - MIR3 SINE MIR -44 164 14 441 285 161 16 chr11 85951667 85951853 -64831700 + MIR SINE MIR 8 220 -42 222 150 0 0 chr11 85952144 85952184 -64831369 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 331 309 55 24 chr11 85952393 85952558 -64830995 - L2 LINE L2 -706 2608 2439 731 221 69 56 chr11 85953114 85953345 -64830208 - MIR SINE MIR -21 241 8 184 306 51 51 chr11 85953523 85953621 -64829932 - L2 LINE L2 -1 3312 3215 345 242 167 0 chr11 85953737 85953857 -64829696 + MER103 DNA DNA 9 148 -18 1179 49 0 0 chr11 85954122 85954266 -64829287 + MLT2A1 LTR ERVL 1 144 -300 31582 67 7 4 chr11 85954377 85958285 -64825268 + HERVL LTR ERVL 4 3925 -1729 12109 213 93 15 chr11 85958286 85960016 -64823537 + L1MA3 LINE L1 42 2104 -4758 2259 95 0 0 chr11 85960016 85960311 -64823242 + AluY SINE Alu 3 297 -14 12109 213 93 15 chr11 85960311 85961528 -64822025 + L1MA3 LINE L1 2104 3225 -3637 2073 101 0 13 chr11 85961532 85961830 -64821723 + AluY SINE Alu 1 294 -17 9162 209 8 4 chr11 85961943 85963947 -64819606 + L1 LINE L1 3566 5576 -1286 337 168 142 80 chr11 85965189 85965302 -64818251 + MIR3 SINE MIR 41 160 -48 11541 145 22 12 chr11 85965360 85967008 -64816545 + L1MA3 LINE L1 3976 5673 -1348 6683 43 0 3 chr11 85967008 85967814 -64815739 + L1PA5 LINE L1 5381 6185 0 11541 145 22 12 chr11 85967814 85969178 -64814375 + L1MA3 LINE L1 5673 7021 0 230 261 80 58 chr11 85969195 85969333 -64814220 + MER112 DNA MER1_type 38 178 -82 976 229 76 45 chr11 85969333 85970152 -64813401 - L1ME3A LINE L1 -14 6156 5224 397 287 35 0 chr11 85970166 85970281 -64813272 + MER112 DNA MER1_type 136 254 -6 266 297 154 0 chr11 85970904 85970995 -64812558 - MIR SINE MIR -155 107 3 245 286 0 44 chr11 85971052 85971143 -64812410 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 620 289 36 5 chr11 85971750 85971968 -64811585 - MIR SINE MIR -2 260 34 276 250 111 0 chr11 85972098 85972170 -64811383 - MIR SINE MIR -87 121 42 264 279 129 14 chr11 85972245 85972385 -64811168 + L3 LINE CR1 1139 1294 -283 212 307 104 37 chr11 85972423 85972586 -64810967 + L3 LINE CR1 1392 1565 -12 294 258 0 0 chr11 85973092 85973154 -64810399 + L2 LINE L2 3210 3271 -1 205 337 23 23 chr11 85973308 85973394 -64810159 + MIR SINE MIR 21 106 -156 1158 256 28 38 chr11 85973410 85973832 -64809721 - L1M4 LINE L1 -3069 3077 2660 890 229 64 36 chr11 85974917 85975166 -64808387 - MIR SINE MIR 0 262 7 183 186 0 0 chr11 85975400 85975443 -64808110 + (TCCA)n Simple_repeat Simple_repeat 1 43 0 211 306 129 32 chr11 85975946 85976070 -64807483 + L2 LINE L2 3132 3267 -5 248 240 27 13 chr11 85977292 85977367 -64806186 + MIR SINE MIR 132 207 -55 208 233 0 0 chr11 85977762 85977805 -64805748 - L2 LINE L2 -20 3252 3210 190 313 43 79 chr11 85977928 85978121 -64805432 + MIR SINE MIR 37 222 -40 2634 138 39 10 chr11 85978182 85978596 -64804957 - MSTB LTR MaLR 0 426 1 363 189 144 22 chr11 85978976 85979066 -64804487 + L2 LINE L2 3213 3313 0 509 177 0 34 chr11 85979546 85979693 -64803860 + CT-rich Low_complexity Low_complexity 2 143 0 418 330 75 0 chr11 85980375 85980563 -64802990 + L2 LINE L2 2890 3091 -181 200 261 92 0 chr11 85980896 85980961 -64802592 + L2 LINE L2 3200 3270 -2 194 229 203 17 chr11 85980978 85981060 -64802493 - MIR3 SINE MIR -24 184 81 183 331 68 60 chr11 85981060 85981193 -64802360 + MIR SINE MIR 2 135 -127 301 304 45 18 chr11 85981363 85981475 -64802078 - L2 LINE L2 0 3272 3158 353 330 190 11 chr11 85981563 85981842 -64801711 + L2 LINE L2 2943 3271 -1 311 338 91 19 chr11 85982299 85982509 -64801044 + MIR SINE MIR 31 255 -7 352 303 104 14 chr11 85982589 85982777 -64800776 - MIR SINE MIR -56 206 8 213 315 135 0 chr11 85983248 85983337 -64800216 - MIR SINE MIR -60 202 102 305 276 19 38 chr11 85983418 85983523 -64800030 + MIR3 SINE MIR 106 208 0 226 273 39 0 chr11 85983672 85983749 -64799804 + (TTCA)n Simple_repeat Simple_repeat 1 80 0 278 195 13 0 chr11 85983868 85983945 -64799608 + (TTTA)n Simple_repeat Simple_repeat 3 80 0 244 225 42 0 chr11 85983952 85984023 -64799530 + (TTCA)n Simple_repeat Simple_repeat 2 75 0 849 285 101 30 chr11 85984693 85985128 -64798425 + MLT1J LTR MaLR 15 480 -31 1210 252 69 22 chr11 85985260 85985665 -64797888 + MLT1C LTR MaLR 8 431 -36 198 278 42 14 chr11 85985671 85985743 -64797810 - L2 LINE L2 -525 2789 2716 291 297 29 29 chr11 85985746 85985884 -64797669 - MIR SINE MIR 0 262 125 953 246 52 4 chr11 85986119 85986351 -64797202 + MIR SINE MIR 13 255 -7 26 0 0 0 chr11 85986389 85986415 -64797138 + AT_rich Low_complexity Low_complexity 1 26 0 244 213 0 0 chr11 85986525 85986572 -64796981 - MIR SINE MIR -62 146 100 420 262 93 58 chr11 85987130 85987302 -64796251 - MIR SINE MIR -11 251 74 2677 92 28 6 chr11 85987322 85987681 -64795872 - L1PB1 LINE L1 -3 6148 5782 291 215 0 0 chr11 85987681 85987746 -64795807 + (TA)n Simple_repeat Simple_repeat 1 65 0 242 258 0 21 chr11 85987746 85987839 -64795714 - L1MC4 LINE L1 -1340 6702 6612 503 62 5 93 chr11 85987839 85988032 -64795521 + (TA)n Simple_repeat Simple_repeat 1 176 0 283 103 138 0 chr11 85988034 85988121 -64795432 + (TATAG)n Simple_repeat Simple_repeat 3 101 0 205 62 12 86 chr11 85988221 85988302 -64795251 + (TA)n Simple_repeat Simple_repeat 1 75 0 303 143 33 77 chr11 85988303 85988394 -64795159 + L1MC4 LINE L1 6617 6703 -1339 525 78 0 64 chr11 85988398 85988516 -64795037 + (TA)n Simple_repeat Simple_repeat 1 125 -7 2689 92 14 0 chr11 85988516 85988862 -64794691 + THE1A LTR MaLR 4 354 -1 525 78 0 64 chr11 85988862 85988874 -64794679 + (TA)n Simple_repeat Simple_repeat 125 125 -7 315 0 0 0 chr11 85988874 85988909 -64794644 + (TG)n Simple_repeat Simple_repeat 2 36 0 525 78 0 64 chr11 85988909 85988918 -64794635 + (TA)n Simple_repeat Simple_repeat 124 132 0 3750 172 7 0 chr11 85988918 85989911 -64793642 - L1P5 LINE L1 -360 5791 4792 316 347 65 0 chr11 85990274 85990398 -64793155 - L2 LINE L2 -8 3264 3133 516 253 215 0 chr11 85990424 85990610 -64792943 - MIR SINE MIR -1 261 36 248 279 39 116 chr11 85990654 85990912 -64792641 - L2 LINE L2 -215 3057 2820 478 295 65 15 chr11 85990984 85991184 -64792369 - MLT1J LTR MaLR -73 438 229 656 274 72 30 chr11 85991280 85991517 -64792036 - MIR SINE MIR -4 258 12 196 318 146 10 chr11 85992272 85992464 -64791089 - L2 LINE L2 -160 3112 2895 1664 214 89 51 chr11 85992554 85992928 -64790625 + MLT1H LTR MaLR 1 402 -147 522 266 0 9 chr11 85992928 85993041 -64790512 - MER81 DNA DNA 0 114 3 1664 214 89 51 chr11 85993041 85993194 -64790359 + MLT1H LTR MaLR 402 548 -1 2805 151 33 11 chr11 85994288 85994745 -64788808 + MLT1C LTR MaLR 1 467 0 267 302 50 22 chr11 85994996 85995135 -64788418 - MIR3 SINE MIR -22 186 44 468 187 13 174 chr11 85995801 85995880 -64787673 + MER94 DNA DNA 3 47 -87 1687 199 3 7 chr11 85995880 85996166 -64787387 - AluJo SINE Alu -27 285 1 468 187 13 174 chr11 85996166 85996241 -64787312 + MER94 DNA DNA 47 132 -2 782 299 81 65 chr11 85996315 85996569 -64786984 + L2 LINE L2 2371 2636 -678 1827 119 91 7 chr11 85996569 85996854 -64786699 - AluSx SINE Alu -3 309 1 782 299 81 65 chr11 85996854 85997017 -64786536 + L2 LINE L2 2636 2795 -519 1902 239 55 28 chr11 85998395 85998902 -64784651 + LTR33 LTR ERVL 1 521 0 234 305 8 34 chr11 85999057 85999175 -64784378 + L1ME4a LINE L1 5544 5658 -463 407 250 50 45 chr11 85999308 85999508 -64784045 + L1ME4a LINE L1 5699 5899 -222 1725 141 25 25 chr11 85999723 86000026 -64783527 + AluJb SINE Alu 1 303 0 466 197 17 8 chr11 86001237 86001354 -64782199 + CT-rich Low_complexity Low_complexity 1 118 0 2171 262 176 23 chr11 86001376 86002614 -64780939 - L2 LINE L2 -25 3288 1841 197 257 50 79 chr11 86002605 86002706 -64780847 + L2 LINE L2 3153 3250 -22 * 930 216 96 0 chr11 86003186 86003385 -64780168 + MER58A DNA MER1_type 1 218 -6 297 240 77 0 chr11 86003434 86003538 -64780015 + Charlie7 DNA MER1_type 44 155 -2457 285 215 31 100 chr11 86003512 86003642 -64779911 + Charlie7 DNA MER1_type 2489 2609 -3 * 420 329 37 41 chr11 86003699 86003942 -64779611 - MIR SINE MIR 0 262 21 372 304 62 9 chr11 86004335 86004447 -64779106 + MIR SINE MIR 28 145 -63 22 0 0 0 chr11 86004526 86004548 -64779005 + AT_rich Low_complexity Low_complexity 1 22 0 781 214 0 0 chr11 86004612 86004743 -64778810 + FLAM_A SINE Alu 1 131 -2 232 240 27 0 chr11 86004767 86004842 -64778711 + L1MC4 LINE L1 6620 6696 -1346 * 7496 203 28 7 chr11 86004832 86007639 -64775914 + L1MC1 LINE L1 3465 6327 -6 2003 230 42 29 chr11 86007646 86008492 -64775061 + L1MB3 LINE L1 5354 6176 -7 1833 158 3 7 chr11 86008616 86008966 -64774587 + AluJb SINE Alu 1 349 0 501 315 78 39 chr11 86009518 86009750 -64773803 - MIR SINE MIR -19 243 3 461 239 145 13 chr11 86009972 86010131 -64773422 - MIR SINE MIR -14 248 69 2473 129 29 5 chr11 86011192 86011573 -64771980 + MLT1B LTR MaLR 1 390 0 457 265 8 29 chr11 86012073 86012349 -64771204 + GA-rich Low_complexity Low_complexity 1 270 0 337 312 55 63 chr11 86012888 86013125 -64770428 + L2 LINE L2 3037 3271 -1 296 314 50 7 chr11 86013831 86013971 -64769582 + MIR SINE MIR 61 206 -56 270 327 40 0 chr11 86014031 86014132 -64769421 + L2 LINE L2 3168 3272 0 573 317 104 18 chr11 86014610 86014831 -64768722 + MIR SINE MIR 11 250 -12 214 210 170 60 chr11 86015378 86015478 -64768075 - MIR SINE MIR -132 130 20 186 296 171 0 chr11 86015623 86015711 -64767842 + L2 LINE L2 3169 3271 -1 201 74 0 0 chr11 86015815 86015842 -64767711 + (TGGA)n Simple_repeat Simple_repeat 2 28 0 460 293 14 14 chr11 86015949 86016195 -64767358 + (TGAA)n Simple_repeat Simple_repeat 1 246 0 185 302 19 0 chr11 86018656 86018709 -64764844 + MIR SINE MIR 68 121 -87 2137 111 0 0 chr11 86018739 86019018 -64764535 - AluSx SINE Alu -33 279 1 325 284 12 0 chr11 86019162 86019243 -64764310 + MIR SINE MIR 66 147 -115 1519 108 63 30 chr11 86019436 86019704 -64763849 - L1PA15 LINE L1 -2 6163 5887 225 0 0 0 chr11 86019880 86019905 -64763648 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 199 175 25 0 chr11 86019931 86019971 -64763582 + MIR SINE MIR 113 153 -109 234 0 0 0 chr11 86020877 86020903 -64762650 + (CTCA)n Simple_repeat Simple_repeat 1 26 0 2129 133 7 0 chr11 86020984 86021278 -64762275 + AluSx SINE Alu 1 296 -16 232 283 115 0 chr11 86021371 86021484 -64762069 + L1ME4a LINE L1 5981 6106 -15 1365 240 119 43 chr11 86021909 86022678 -64760875 - L1ME4a LINE L1 -1 6120 5294 271 310 190 9 chr11 86023486 86023602 -64759951 + MIR SINE MIR 20 156 -106 197 234 0 21 chr11 86024244 86024291 -64759262 - L2 LINE L2 -20 3293 3248 279 260 31 63 chr11 86024814 86024941 -64758612 + MIR SINE MIR 70 192 -70 261 0 0 0 chr11 86025568 86025597 -64757956 + (A)n Simple_repeat Simple_repeat 1 29 0 334 296 7 34 chr11 86026171 86026324 -64757229 + MIR SINE MIR 27 132 -76 234 150 0 0 chr11 86026689 86026729 -64756824 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 194 290 40 4 chr11 86026933 86027013 -64756540 - MIR SINE MIR -105 103 20 282 330 66 0 chr11 86028049 86028140 -64755413 - L2 LINE L2 -36 3236 3140 803 271 22 13 chr11 86028444 86028673 -64754880 + MIR SINE MIR 29 259 -3 307 263 13 13 chr11 86028740 86028816 -64754737 + L2 LINE L2 3230 3305 -8 365 299 21 39 chr11 86029663 86029737 -64753816 - MIR SINE MIR 0 262 188 908 220 23 46 chr11 86029737 86029955 -64753598 + MER58C DNA MER1_type 3 215 0 365 299 21 39 chr11 86029955 86030085 -64753468 - MIR SINE MIR -74 188 63 1182 284 24 6 chr11 86030087 86030421 -64753132 - MER102b DNA MER1_type 0 341 2 249 296 20 20 chr11 86030433 86030531 -64753022 - MIR3 SINE MIR -46 162 65 1065 158 0 0 chr11 86030553 86030705 -64752848 - AluSg/x SINE Alu -26 286 135 432 0 0 0 chr11 86030705 86030753 -64752800 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1945 142 7 0 chr11 86030755 86031036 -64752517 - AluSx SINE Alu -29 283 1 221 257 74 68 chr11 86031148 86031296 -64752257 - MIR3 SINE MIR -2 206 58 641 158 152 6 chr11 86032160 86032318 -64751235 + MER5A DNA MER1_type 9 189 0 698 290 56 0 chr11 86032327 86032558 -64750995 + MIR SINE MIR 18 261 -1 1112 316 82 13 chr11 86032970 86033504 -64750049 + HAL1 LINE L1 5 575 -1932 780 200 0 13 chr11 86033521 86033671 -64749882 + AluJb SINE Alu 161 308 -4 1277 216 101 43 chr11 86033671 86034184 -64749369 + HAL1 LINE L1 1061 1603 -904 1728 226 90 77 chr11 86034186 86035031 -64748522 + HAL1 LINE L1 1651 2506 -1 214 290 299 0 chr11 86035182 86035289 -64748264 + MIR3 SINE MIR 3 141 -67 * 244 279 88 22 chr11 86035266 86035402 -64748151 + MIR SINE MIR 118 262 0 903 222 69 33 chr11 86035906 86036239 -64747314 + L1MC5 LINE L1 6612 6956 -1005 195 42 0 0 chr11 86036290 86036314 -64747239 + (T)n Simple_repeat Simple_repeat 1 24 0 939 210 20 10 chr11 86036384 86036579 -64746974 + MER20 DNA MER1_type 3 199 -20 218 293 50 10 chr11 86036718 86036817 -64746736 - L2 LINE L2 -557 2757 2655 1705 185 85 121 chr11 86036822 86037272 -64746281 + L1MC5 LINE L1 6977 7397 -564 864 20 0 0 chr11 86037272 86037370 -64746183 + L1PA3 LINE L1 6054 6151 -4 1705 185 85 121 chr11 86037370 86037580 -64745973 + L1MC5 LINE L1 7397 7613 -348 284 176 141 24 chr11 86037583 86037668 -64745885 + L1MC5 LINE L1 7768 7862 -99 644 299 66 40 chr11 86037735 86038263 -64745290 - L1ME4a LINE L1 -254 5867 5326 1278 140 25 0 chr11 86038265 86038465 -64745088 - AluSg/x SINE Alu -3 309 105 4474 124 18 33 chr11 86039039 86039070 -64744483 + L1MA4 LINE L1 5548 5578 -722 2933 111 28 0 chr11 86039070 86039492 -64744061 - MER57B LTR ERV1 0 434 1 4474 124 18 33 chr11 86039492 86040039 -64743514 + L1MA4 LINE L1 5578 6115 -185 2094 140 13 0 chr11 86040039 86040339 -64743214 - AluSx SINE Alu -8 304 1 4474 124 18 33 chr11 86040339 86040518 -64743035 + L1MA4 LINE L1 6115 6295 -5 284 270 22 0 chr11 86040734 86040823 -64742730 + MIR SINE MIR 141 231 -31 543 225 0 8 chr11 86041581 86041701 -64741852 - L2 LINE L2 0 3313 3195 2279 88 3 0 chr11 86041889 86042172 -64741381 - AluSp SINE Alu -27 286 3 219 69 0 0 chr11 86042196 86042225 -64741328 + (TCCA)n Simple_repeat Simple_repeat 1 29 0 362 309 143 0 chr11 86042264 86042439 -64741114 + MIR SINE MIR 63 262 0 186 279 25 25 chr11 86042457 86042536 -64741017 - L2 LINE L2 -1 3271 3193 241 274 8 40 chr11 86043879 86044003 -64739550 - HAL1b LINE L1 0 1348 1229 258 214 123 70 chr11 86044049 86044236 -64739317 - L1ME LINE L1 -220 5901 5705 186 276 5 119 chr11 86044582 86044767 -64738786 + L2 LINE L2 2596 2759 -555 195 275 62 25 chr11 86044935 86045015 -64738538 + L2 LINE L2 2941 3023 -249 1341 186 80 19 chr11 86045015 86045125 -64738428 + AluJo SINE Alu 1 103 -209 186 43 0 0 chr11 86045125 86045148 -64738405 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1341 186 80 19 chr11 86045148 86045301 -64738252 + AluJo SINE Alu 103 280 -32 1463 174 29 0 chr11 86045348 86045623 -64737930 - L1MC4 LINE L1 -540 7502 7220 437 229 76 0 chr11 86045816 86045934 -64737619 + L2 LINE L2 3146 3272 0 401 335 85 5 chr11 86046401 86046613 -64736940 - MIR SINE MIR -6 256 28 258 255 23 68 chr11 86047046 86047287 -64736266 + GA-rich Low_complexity Low_complexity 1 230 0 206 243 149 14 chr11 86051803 86051877 -64731676 + MIR SINE MIR 78 161 -101 602 190 127 6 chr11 86051904 86052062 -64731491 - L1MC4 LINE L1 -291 7751 7575 332 253 89 7 chr11 86053296 86053442 -64730111 - L1ME LINE L1 -349 5772 5615 405 210 10 0 chr11 86054950 86055050 -64728503 - MER5A DNA MER1_type -80 109 9 188 281 191 11 chr11 86055330 86055419 -64728134 - MIR SINE MIR -135 127 23 980 199 38 0 chr11 86056131 86056317 -64727236 - MER3 DNA MER1_type -5 204 12 271 326 11 0 chr11 86056443 86056535 -64727018 + MIR SINE MIR 12 104 -158 914 276 59 8 chr11 86056632 86057019 -64726534 + L1ME4a LINE L1 5484 5887 -234 28 0 0 0 chr11 86057179 86057207 -64726346 + AT_rich Low_complexity Low_complexity 1 28 0 298 286 98 18 chr11 86057489 86057601 -64725952 + MIR SINE MIR 48 168 -94 237 65 0 0 chr11 86058035 86058066 -64725487 + (T)n Simple_repeat Simple_repeat 1 31 0 474 248 23 0 chr11 86058269 86058398 -64725155 + MIR SINE MIR 55 186 -76 377 282 21 56 chr11 86058605 86058747 -64724806 + MIR SINE MIR 49 185 -77 424 307 36 12 chr11 86059199 86059365 -64724188 + MER5B DNA MER1_type 9 178 0 404 270 176 7 chr11 86060020 86060168 -64723385 - MER5A DNA MER1_type -4 185 13 888 298 119 8 chr11 86060549 86061029 -64722524 - L1ME4a LINE L1 -1 6120 5588 1090 289 31 8 chr11 86061388 86061741 -64721812 + L2 LINE L2 2269 2629 -685 307 333 58 0 chr11 86061747 86061903 -64721650 - MIR SINE MIR -42 220 56 232 174 22 22 chr11 86062677 86062723 -64720830 - MIR SINE MIR -197 65 20 329 272 125 0 chr11 86062866 86063002 -64720551 + L3 LINE CR1 1387 1539 -38 292 304 98 52 chr11 86063229 86063276 -64720277 + MIR SINE MIR 36 79 -183 917 158 25 113 chr11 86063276 86063305 -64720248 - MER20 DNA MER1_type 0 219 189 2225 110 0 0 chr11 86063305 86063597 -64719956 - AluY SINE Alu -14 297 6 1440 171 44 82 chr11 86063601 86063797 -64719756 - AluJb SINE Alu -9 303 122 189 0 0 0 chr11 86063797 86063818 -64719735 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1440 171 44 82 chr11 86063818 86063936 -64719617 - AluJb SINE Alu -190 122 1 917 158 25 113 chr11 86063936 86064141 -64719412 - MER20 DNA MER1_type -33 186 1 292 304 98 52 chr11 86064141 86064287 -64719266 + MIR SINE MIR 79 238 -24 207 0 0 0 chr11 86064696 86064719 -64718834 + (A)n Simple_repeat Simple_repeat 1 23 0 469 301 53 26 chr11 86064836 86065062 -64718491 + MIR SINE MIR 21 252 -10 321 261 11 11 chr11 86065838 86065930 -64717623 - MIR SINE MIR -148 114 23 315 0 0 0 chr11 86065971 86066006 -64717547 + (TG)n Simple_repeat Simple_repeat 2 36 0 390 267 69 8 chr11 86067592 86067723 -64715830 + MER103 DNA DNA 12 150 -16 224 250 153 32 chr11 86068548 86068672 -64714881 - MIR SINE MIR -79 183 45 337 298 0 0 chr11 86069215 86069309 -64714244 - MARNA DNA Mariner -61 525 432 358 333 93 44 chr11 86069339 86069748 -64713805 - L2 LINE L2 -1 3271 2843 545 252 84 0 chr11 86069969 86070100 -64713453 + MER3 DNA MER1_type 3 144 -65 580 309 39 0 chr11 86071470 86071674 -64711879 + MIR SINE MIR 26 237 -25 3424 211 39 13 chr11 86071756 86072527 -64711026 + L1ME1 LINE L1 5371 6161 -5 511 287 63 0 chr11 86072632 86072806 -64710747 + MIR SINE MIR 50 234 -28 346 286 94 23 chr11 86073096 86073267 -64710286 - MIR3 SINE MIR -9 199 17 241 292 94 1 chr11 86073842 86073983 -64709570 - MIR SINE MIR -69 139 16 387 202 0 0 chr11 86074046 86074135 -64709418 + (TG)n Simple_repeat Simple_repeat 1 89 0 537 231 112 77 chr11 86074316 86074628 -64708925 - L1MC4 LINE L1 -91 7951 7629 729 294 48 4 chr11 86075576 86075804 -64707749 - MIR SINE MIR -11 251 14 270 265 113 40 chr11 86076741 86076892 -64706661 + MIR SINE MIR 23 184 -78 220 167 0 0 chr11 86077121 86077163 -64706390 + MIR SINE MIR 102 143 -119 267 79 0 0 chr11 86077271 86077309 -64706244 + (TG)n Simple_repeat Simple_repeat 2 39 0 343 242 140 38 chr11 86077448 86077605 -64705948 - MIR SINE MIR -6 256 84 302 196 185 0 chr11 86077770 86077862 -64705691 - L2 LINE L2 -2 3311 3203 1003 252 46 42 chr11 86077963 86078095 -64705458 - LTR16C LTR ERVL 0 491 361 1421 103 75 0 chr11 86078095 86078309 -64705244 - MER30 DNA MER1_type 0 230 1 1003 252 46 42 chr11 86078309 86078482 -64705071 - LTR16C LTR ERVL -130 361 185 393 117 0 0 chr11 86079135 86079195 -64704358 + (CA)n Simple_repeat Simple_repeat 1 60 0 189 232 73 37 chr11 86079903 86079985 -64703568 - MER5A DNA MER1_type -2 187 103 2124 142 7 0 chr11 86080052 86080362 -64703191 + AluSx SINE Alu 1 312 0 627 187 24 0 chr11 86080362 86080485 -64703068 + MER5A DNA MER1_type 63 188 -1 424 335 105 10 chr11 86080666 86080866 -64702687 + MIR SINE MIR 44 262 0 252 265 31 20 chr11 86081229 86081327 -64702226 + L2 LINE L2 3211 3309 -4 225 303 66 25 chr11 86081501 86081623 -64701930 + MIR3 SINE MIR 34 160 -48 1149 248 93 29 chr11 86081662 86082070 -64701483 - MER113 DNA MER1_type? -56 465 32 207 0 0 0 chr11 86082385 86082408 -64701145 + (T)n Simple_repeat Simple_repeat 1 23 0 478 237 77 12 chr11 86082859 86083028 -64700525 + MIR SINE MIR 53 232 -30 207 69 0 0 chr11 86083052 86083081 -64700472 + (TAA)n Simple_repeat Simple_repeat 3 31 0 1158 151 18 32 chr11 86083624 86083843 -64699710 - L1MB5 LINE L1 -6 6168 5953 283 306 109 0 chr11 86084280 86084427 -64699126 + MIR SINE MIR 48 210 -52 290 210 62 68 chr11 86084784 86084934 -64698619 + MIR SINE MIR 115 262 0 211 162 0 0 chr11 86085349 86085386 -64698167 - L2 LINE L2 -9 3304 3268 218 278 0 19 chr11 86086148 86086202 -64697351 - L2 LINE L2 -97 3175 3123 190 129 0 0 chr11 86086204 86086235 -64697318 + L2 LINE L2 3149 3179 -93 411 279 192 0 chr11 86086536 86086765 -64696788 + L1ME4a LINE L1 5847 6119 -2 421 268 79 8 chr11 86086918 86087045 -64696508 + L2 LINE L2 3125 3260 -12 395 308 23 0 chr11 86087501 86087634 -64695919 - MIR SINE MIR -17 245 110 383 38 19 0 chr11 86088109 86088162 -64695391 + (TG)n Simple_repeat Simple_repeat 2 55 0 288 235 0 59 chr11 86088211 86088296 -64695257 + L3 LINE CR1 1453 1532 -45 558 255 69 52 chr11 86088301 86088532 -64695021 - MIR SINE MIR 0 262 28 296 316 9 26 chr11 86088625 86088739 -64694814 + L3 LINE CR1 1452 1563 -14 277 280 43 43 chr11 86089243 86089429 -64694124 + L2 LINE L2 2906 3091 -181 198 0 0 0 chr11 86089488 86089510 -64694043 + (T)n Simple_repeat Simple_repeat 1 22 0 360 254 8 35 chr11 86089736 86089850 -64693703 - MIR SINE MIR -71 137 44 611 280 10 37 chr11 86090815 86091040 -64692513 + MIR SINE MIR 22 238 -24 274 177 16 32 chr11 86092267 86092329 -64691224 - MIR SINE MIR -93 169 109 376 272 58 10 chr11 86092817 86092920 -64690633 + L2 LINE L2 3140 3247 -25 1252 193 11 49 chr11 86093138 86093423 -64690130 - MLT1C LTR MaLR -2 465 192 897 238 21 62 chr11 86093406 86093646 -64689907 - MLT1C LTR MaLR -231 236 7 * 314 280 77 15 chr11 86093730 86093896 -64689657 - MIR SINE MIR -72 190 20 244 254 59 59 chr11 86094800 86094918 -64688635 - MIR SINE MIR -54 208 91 229 337 158 27 chr11 86094912 86095096 -64688457 + MIR SINE MIR 38 245 -17 * 245 306 0 51 chr11 86095482 86095580 -64687973 - MIR SINE MIR -57 151 59 1255 207 86 25 chr11 86096395 86096709 -64686844 - MER46C DNA MER2_type 0 338 6 557 249 224 0 chr11 86097017 86097218 -64686335 - MIR SINE MIR -3 259 14 339 283 87 0 chr11 86097304 86097442 -64686111 - MIR SINE MIR 0 262 113 209 344 57 27 chr11 86098025 86098287 -64685266 + L2 LINE L2 2461 2730 -584 1859 143 60 57 chr11 86098299 86098684 -64684869 - MER58D DNA MER1_type 0 386 1 367 264 10 107 chr11 86098692 86098796 -64684757 - MER5B DNA MER1_type 0 178 100 1861 166 10 7 chr11 86098796 86099104 -64684449 + AluJo SINE Alu 2 310 -2 367 264 10 107 chr11 86099104 86099196 -64684357 - MER5B DNA MER1_type -78 100 1 202 312 218 43 chr11 86099226 86099620 -64683933 + L2 LINE L2 2809 3271 -1 1798 163 54 0 chr11 86100235 86100529 -64683024 - AluJb SINE Alu -2 310 1 341 273 23 23 chr11 86100695 86100823 -64682730 - MIR SINE MIR -78 184 57 2681 233 64 38 chr11 86100832 86102148 -64681405 - L1ME3A LINE L1 -5 6165 4818 869 174 47 17 chr11 86102928 86103100 -64680453 - MER5B DNA MER1_type -1 177 1 2268 90 0 0 chr11 86103261 86103594 -64679959 - AluSx SINE Alu 0 340 8 289 358 15 29 chr11 86103625 86103762 -64679791 - MIR3 SINE MIR -44 164 30 258 116 0 0 chr11 86104164 86104207 -64679346 + (GCTG)n Simple_repeat Simple_repeat 1 43 0 572 255 166 43 chr11 86104755 86105194 -64678359 - LTR33 LTR ERVL -7 514 22 261 336 0 0 chr11 86106049 86106153 -64677400 + MIR SINE MIR 38 141 -121 649 286 86 4 chr11 86106345 86106579 -64676974 + MIR SINE MIR 8 260 -2 180 326 118 14 chr11 86107198 86107342 -64676211 - MIR SINE MIR -24 238 80 515 208 161 0 chr11 86107550 86107680 -64675873 - MER103 DNA DNA -1 165 15 299 272 33 38 chr11 86108276 86108460 -64675093 + L2 LINE L2 2335 2517 -797 643 301 57 0 chr11 86108468 86108677 -64674876 + MIR SINE MIR 8 228 -34 515 302 94 14 chr11 86108724 86109095 -64674458 + L2 LINE L2 2555 2955 -359 188 164 0 73 chr11 86109183 86109238 -64674315 + L2 LINE L2 3172 3222 -91 1087 168 0 11 chr11 86109329 86109508 -64674045 - FRAM SINE Alu 0 176 1 308 304 9 0 chr11 86109521 86109633 -64673920 - MIR SINE MIR -111 151 39 22 0 0 0 chr11 86110144 86110166 -64673387 + AT_rich Low_complexity Low_complexity 1 22 0 369 286 58 21 chr11 86110632 86110821 -64672732 - MIR SINE MIR -17 245 50 1791 222 76 8 chr11 86110898 86111371 -64672182 - MLT1D LTR MaLR 0 505 1 261 0 0 0 chr11 86111595 86111624 -64671929 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 220 296 52 26 chr11 86111738 86111853 -64671700 - L2 LINE L2 -221 3051 2934 228 154 0 0 chr11 86113667 86113719 -64669834 + (TA)n Simple_repeat Simple_repeat 1 52 0 225 247 0 0 chr11 86114704 86114785 -64668768 + (TCCA)n Simple_repeat Simple_repeat 1 81 0 519 216 0 0 chr11 86114798 86115052 -64668501 + (TCCA)n Simple_repeat Simple_repeat 1 254 0 202 309 74 0 chr11 86115052 86115133 -64668420 - L2 LINE L2 0 3313 3227 348 298 66 11 chr11 86115469 86115685 -64667868 - MIR SINE MIR -8 254 16 292 316 59 56 chr11 86116965 86117397 -64666156 - L1MC/D LINE L1 -748 5398 5189 180 0 0 0 chr11 86117447 86117467 -64666086 + (T)n Simple_repeat Simple_repeat 1 20 0 23 33 0 0 chr11 86117735 86117765 -64665788 + AT_rich Low_complexity Low_complexity 1 30 0 241 326 149 28 chr11 86118151 86118292 -64665261 - MIR3 SINE MIR -8 200 43 255 188 16 78 chr11 86118308 86118372 -64665181 + MIR SINE MIR 20 79 -183 202 268 358 16 chr11 86119303 86119426 -64664127 - MIR SINE MIR -6 256 92 965 247 54 14 chr11 86119459 86119682 -64663871 - MIR SINE MIR -19 243 12 248 233 17 17 chr11 86119874 86119934 -64663619 - MIR SINE MIR -79 129 70 223 246 127 25 chr11 86120027 86120145 -64663408 - L2 LINE L2 -3 3269 3140 206 192 19 0 chr11 86120811 86120863 -64662690 + GA-rich Low_complexity Low_complexity 2 54 0 298 306 58 64 chr11 86121029 86121202 -64662351 - MIR SINE MIR -69 193 22 184 324 84 0 chr11 86122115 86122186 -64661367 + MIR SINE MIR 131 207 -55 233 226 19 19 chr11 86122188 86122241 -64661312 + Charlie5 DNA MER1_type 9 61 -2551 282 349 109 11 chr11 86122259 86122434 -64661119 + L2 LINE L2 2725 2916 -398 456 231 12 132 chr11 86122437 86122680 -64660873 + L2 LINE L2 3019 3232 -40 321 305 140 30 chr11 86123434 86123670 -64659883 + MIR SINE MIR 1 262 0 257 288 8 76 chr11 86123928 86124060 -64659493 + L2 LINE L2 3146 3268 -4 609 267 19 58 chr11 86124610 86124816 -64658737 - MIR SINE MIR -35 227 30 571 298 97 43 chr11 86124907 86125186 -64658367 - MER102a DNA MER1_type -3 327 34 279 302 47 9 chr11 86125260 86125366 -64658187 + MARNA DNA Mariner 111 220 -366 775 272 57 13 chr11 86125382 86125610 -64657943 - MIR SINE MIR -24 238 1 227 289 52 31 chr11 86126063 86126160 -64657393 + MIR SINE MIR 45 143 -65 348 283 150 38 chr11 86126344 86126584 -64656969 - L1M4 LINE L1 -1198 4948 4682 668 276 33 0 chr11 86126587 86126797 -64656756 - LTR33 LTR ERVL 0 521 305 182 411 124 0 chr11 86127983 86128112 -64655441 - L2 LINE L2 -20 3252 3108 451 212 227 45 chr11 86128664 86128933 -64654620 - L1MC5 LINE L1 -32 7929 7612 1595 185 21 0 chr11 86128977 86129263 -64654290 - AluJo SINE Alu -20 292 1 21 0 0 0 chr11 86129324 86129345 -64654208 + AT_rich Low_complexity Low_complexity 1 21 0 359 281 0 0 chr11 86129346 86129435 -64654118 + L2 LINE L2 3181 3269 -3 619 167 17 23 chr11 86129483 86129657 -64653896 + GA-rich Low_complexity Low_complexity 4 176 0 358 302 78 63 chr11 86131584 86131789 -64651764 - MIR SINE MIR -50 212 5 545 276 148 5 chr11 86131822 86132025 -64651528 - MIR SINE MIR -28 234 3 339 239 23 45 chr11 86132426 86132514 -64651039 + MIR SINE MIR 63 148 -60 2364 128 112 49 chr11 86132558 86132695 -64650858 - MER101 LTR ERV1 0 474 347 2113 103 0 0 chr11 86132695 86132997 -64650556 - AluSx SINE Alu 0 302 1 2364 128 112 49 chr11 86132997 86133304 -64650249 - MER101 LTR ERV1 -127 347 1 357 291 61 34 chr11 86133550 86133698 -64649855 - L3 LINE CR1 -249 1328 1177 183 295 51 26 chr11 86133905 86133983 -64649570 - L3 LINE CR1 -981 596 517 284 306 76 28 chr11 86134046 86134190 -64649363 - MIR SINE MIR -12 250 100 912 250 14 5 chr11 86134243 86134463 -64649090 - MER58A DNA MER1_type 0 224 3 277 250 10 20 chr11 86135260 86135360 -64648193 + (TCTCTG)n Simple_repeat Simple_repeat 2 100 0 209 345 0 12 chr11 86135432 86135516 -64648037 + CT-rich Low_complexity Low_complexity 2 84 0 246 296 139 17 chr11 86136138 86136253 -64647300 - MIR SINE MIR -14 248 120 1976 117 3 3 chr11 86136505 86136824 -64646729 - AluSx SINE Alu 0 319 1 1063 245 44 91 chr11 86136824 86137508 -64646045 - L2 LINE L2 -10 3303 2651 1671 177 0 32 chr11 86137508 86137819 -64645734 + AluJo SINE Alu 1 301 -11 1063 245 44 91 chr11 86137819 86137905 -64645648 - L2 LINE L2 -662 2651 2562 411 310 39 8 chr11 86138115 86138244 -64645309 + L2 LINE L2 3122 3254 -18 632 274 103 49 chr11 86138489 86138752 -64644801 + L2 LINE L2 3037 3313 0 360 219 198 0 chr11 86139178 86139274 -64644279 + MIR3 SINE MIR 85 199 -9 532 248 97 0 chr11 86139297 86139442 -64644111 - MIR SINE MIR -1 261 103 1038 211 214 19 chr11 86139456 86139769 -64643784 - MLT1B LTR MaLR -15 375 2 2753 13 0 0 chr11 86140169 86140480 -64643073 + AluYb8 SINE Alu 1 311 -7 444 276 24 24 chr11 86140788 86140915 -64642638 - MIR SINE MIR -52 210 84 409 263 11 0 chr11 86141211 86141306 -64642247 + MIR SINE MIR 107 202 -60 1841 196 23 9 chr11 86141306 86141682 -64641871 - MLT1A2 LTR MaLR 0 450 1 234 214 0 0 chr11 86141684 86141726 -64641827 + MIR SINE MIR 200 241 -21 194 152 0 43 chr11 86141840 86141886 -64641667 + GA-rich Low_complexity Low_complexity 2 45 0 384 296 52 35 chr11 86142068 86142240 -64641313 + MIR3 SINE MIR 15 189 -19 345 278 24 40 chr11 86142255 86142381 -64641172 + MIR SINE MIR 12 135 -127 2161 110 3 0 chr11 86144274 86144583 -64638970 - AluSx SINE Alu -2 310 1 364 229 71 0 chr11 86144589 86144659 -64638894 - L2 LINE L2 0 3272 3198 2137 195 74 4 chr11 86144779 86145251 -64638302 + MLT1D LTR MaLR 1 505 0 807 231 76 29 chr11 86145584 86145822 -64637731 + MIR SINE MIR 12 260 -2 189 304 36 54 chr11 86146059 86146171 -64637382 - MIR SINE MIR -64 144 35 606 327 42 39 chr11 86146924 86147184 -64636369 - MIR SINE MIR 0 262 2 346 318 39 23 chr11 86147286 86147415 -64636138 - L2 LINE L2 -1 3312 3182 275 265 20 41 chr11 86147411 86147509 -64636044 - L2 LINE L2 -553 2761 2666 * 250 285 73 91 chr11 86147588 86147753 -64635800 + L2 LINE L2 3076 3237 -35 234 0 0 0 chr11 86148196 86148222 -64635331 + (TG)n Simple_repeat Simple_repeat 2 27 0 261 139 0 0 chr11 86148854 86148897 -64634656 + (TCCA)n Simple_repeat Simple_repeat 1 43 0 2537 57 0 0 chr11 86149264 86149578 -64633975 + AluYb8 SINE Alu 3 316 -2 254 289 53 4 chr11 86150554 86150678 -64632875 - MIR SINE MIR -63 145 16 378 289 126 0 chr11 86150913 86151048 -64632505 - MIR SINE MIR -19 243 92 375 200 57 0 chr11 86151359 86151441 -64632112 - MER5A DNA MER1_type -98 91 4 411 255 105 39 chr11 86151610 86151763 -64631790 - MIR SINE MIR -80 182 20 188 340 0 0 chr11 86153085 86153138 -64630415 + L3 LINE CR1 1176 1228 -349 426 123 14 55 chr11 86153168 86153241 -64630312 - L2 LINE L2 0 3313 3244 369 287 7 73 chr11 86153762 86153912 -64629641 - MIR SINE MIR -14 248 109 620 274 29 66 chr11 86153914 86154155 -64629398 + MIR SINE MIR 21 252 -10 957 198 6 6 chr11 86154589 86154761 -64628792 - MER5B DNA MER1_type -6 172 1 302 237 102 26 chr11 86155351 86155490 -64628063 - MIR SINE MIR -65 143 42 641 284 28 28 chr11 86155781 86155992 -64627561 + MIR SINE MIR 48 258 -4 1910 200 105 30 chr11 86156063 86156529 -64627024 - MLT1D LTR MaLR -4 501 1 396 293 74 28 chr11 86156537 86156752 -64626801 - L2 LINE L2 -214 3058 2834 327 266 22 36 chr11 86157512 86157651 -64625902 + CT-rich Low_complexity Low_complexity 2 138 0 365 243 61 10 chr11 86157653 86157760 -64625793 + MIR SINE MIR 48 152 -58 242 134 309 13 chr11 86158465 86158545 -64625008 - MIR SINE MIR -71 137 46 469 307 21 0 chr11 86159133 86159273 -64624280 - L2 LINE L2 -2 3311 3169 430 265 53 8 chr11 86160608 86160740 -64622813 - MIR SINE MIR -55 207 70 327 336 29 22 chr11 86160970 86161107 -64622446 - MIR3 SINE MIR -61 147 10 278 383 119 14 chr11 86162119 86162404 -64621149 - L2 LINE L2 -42 3230 2916 308 294 77 7 chr11 86162473 86162616 -64620937 + MER103 DNA DNA 1 153 -13 515 287 7 22 chr11 86163409 86163545 -64620008 + MIR SINE MIR 21 154 -108 290 335 151 25 chr11 86163642 86163961 -64619592 + L3 LINE CR1 868 1226 -351 315 220 17 0 chr11 86163989 86164048 -64619505 + L2 LINE L2 3200 3259 -13 348 64 0 0 chr11 86164048 86164095 -64619458 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 188 314 181 0 chr11 86164101 86164206 -64619347 + MIR SINE MIR 25 148 -114 270 313 210 20 chr11 86164352 86164547 -64619006 + L3 LINE CR1 1268 1499 -78 197 222 37 37 chr11 86164618 86164672 -64618881 + MIR SINE MIR 101 154 -108 310 287 134 51 chr11 86164744 86164960 -64618593 + Charlie8 DNA MER1_type 1 234 -2183 544 290 97 0 chr11 86165080 86165256 -64618297 + MIR SINE MIR 2 194 -68 342 333 27 54 chr11 86165871 86166057 -64617496 - MIR SINE MIR -80 182 2 417 282 73 0 chr11 86166516 86166640 -64616913 + MIR SINE MIR 52 184 -78 285 259 35 0 chr11 86166687 86166772 -64616781 - MIR SINE MIR -57 205 118 1011 337 96 7 chr11 86166966 86167096 -64616457 + L2 LINE L2 2406 2523 -790 859 216 88 16 chr11 86167096 86167290 -64616263 - MER63A DNA MER1_type -2 208 1 1011 337 96 7 chr11 86167290 86167916 -64615637 + L2 LINE L2 2523 3221 -92 326 278 132 63 chr11 86168390 86168595 -64614958 + MIR SINE MIR 41 259 -3 316 296 31 0 chr11 86169003 86169101 -64614452 + MIR SINE MIR 45 145 -63 189 0 0 0 chr11 86169658 86169679 -64613874 + (A)n Simple_repeat Simple_repeat 1 21 0 327 276 24 32 chr11 86169682 86169805 -64613748 + MIR SINE MIR 53 174 -88 188 277 0 85 chr11 86171756 86171850 -64611703 - MIR SINE MIR -120 142 57 298 56 0 0 chr11 86172592 86172628 -64610925 - MLT2C1 LTR ERVL -10 387 352 258 206 0 0 chr11 86172635 86172708 -64610845 + (TA)n Simple_repeat Simple_repeat 1 73 0 1204 189 55 64 chr11 86172719 86172805 -64610748 - MER2 DNA MER2_type 0 344 259 1608 171 36 46 chr11 86172805 86173109 -64610444 + AluJo SINE Alu 1 301 -11 1204 189 55 64 chr11 86173109 86173366 -64610187 - MER2 DNA MER2_type -85 259 4 227 172 0 35 chr11 86173386 86173444 -64610109 + (TATG)n Simple_repeat Simple_repeat 1 56 0 1813 186 37 14 chr11 86173444 86173803 -64609750 - MLT2C1 LTR ERVL -41 479 1 648 297 17 6 chr11 86174905 86175080 -64608473 - MER45A DNA AcHobo 0 178 2 218 288 40 32 chr11 86175083 86175208 -64608345 - L2 LINE L2 -221 3051 2926 216 0 0 0 chr11 86175667 86175691 -64607862 + (T)n Simple_repeat Simple_repeat 1 24 0 373 331 13 0 chr11 86176110 86176267 -64607286 - MIR3 SINE MIR -8 200 42 180 267 0 0 chr11 86176310 86176355 -64607198 + MIR SINE MIR 103 147 -115 301 211 14 0 chr11 86176423 86176494 -64607059 + MIR SINE MIR 71 142 -120 186 208 0 0 chr11 86176569 86176617 -64606936 + (TTA)n Simple_repeat Simple_repeat 3 50 0 472 312 27 16 chr11 86176664 86176850 -64606703 + MIR SINE MIR 1 188 -74 579 298 51 21 chr11 86178094 86178329 -64605224 + MIR SINE MIR 3 244 -18 2027 181 34 41 chr11 86178488 86178903 -64604650 - MER63B DNA MER1_type -20 416 5 299 267 0 12 chr11 86178923 86179009 -64604544 - L3 LINE CR1 -155 1422 1338 271 302 82 31 chr11 86179632 86179791 -64603762 + MIR SINE MIR 32 198 -64 416 240 100 84 chr11 86181243 86181347 -64602206 + MER112 DNA MER1_type 1 102 -158 370 83 0 266 chr11 86181347 86181456 -64602097 - MADE1 DNA Mariner 0 80 1 416 240 100 84 chr11 86181456 86181601 -64601952 + MER112 DNA MER1_type 102 254 -6 488 220 0 0 chr11 86181668 86181777 -64601776 - MER5A DNA MER1_type -80 109 1 841 233 17 6 chr11 86182377 86182553 -64601000 + MER5B DNA MER1_type 1 178 0 654 287 16 44 chr11 86183028 86183279 -64600274 - MIR SINE MIR -18 244 1 265 296 0 0 chr11 86184613 86184684 -64598869 - L2 LINE L2 -12 3260 3190 648 261 26 101 chr11 86184700 86184968 -64598585 + MIR SINE MIR 5 252 -10 254 316 71 0 chr11 86184997 86185095 -64598458 - L2 LINE L2 -14 3258 3154 30 27 0 0 chr11 86186372 86186409 -64597144 + AT_rich Low_complexity Low_complexity 1 37 0 484 273 201 8 chr11 86188057 86188329 -64595224 + Charlie8 DNA MER1_type 2 1425 -992 343 295 33 16 chr11 86188445 86188567 -64594986 - MIR SINE MIR -70 192 69 288 293 21 36 chr11 86188562 86188702 -64594851 + MIR3 SINE MIR 9 146 -62 * 1776 192 60 5 chr11 86188753 86189133 -64594420 + Charlie4a DNA MER1_type 94 494 -14 189 214 71 0 chr11 86189572 86189628 -64593925 - MIR SINE MIR -122 140 81 587 301 31 28 chr11 86189739 86190064 -64593489 - L2 LINE L2 -661 2653 2328 375 217 186 12 chr11 86190102 86190263 -64593290 + MIR SINE MIR 59 247 -15 325 330 78 44 chr11 86190504 86190710 -64592843 + MIR SINE MIR 36 248 -14 201 304 36 27 chr11 86191537 86191649 -64591904 + L2 LINE L2 2638 2750 -564 460 266 87 1 chr11 86192030 86192201 -64591352 - MIR SINE MIR -62 146 9 901 256 37 12 chr11 86193603 86193849 -64589704 + MIR SINE MIR 6 257 -5 488 266 169 14 chr11 86193873 86194080 -64589473 - MIR SINE MIR 0 262 24 32 0 0 0 chr11 86195179 86195211 -64588342 + AT_rich Low_complexity Low_complexity 1 32 0 612 320 64 58 chr11 86195218 86195317 -64588236 - L2 LINE L2 -8 3264 3167 2411 135 78 8 chr11 86195317 86195717 -64587836 - MSTA LTR MaLR 0 428 1 612 320 64 58 chr11 86195717 86196426 -64587127 - L2 LINE L2 -105 3167 2443 283 322 70 22 chr11 86196558 86196788 -64586765 + L1MC/D LINE L1 5318 5558 -2250 185 266 0 38 chr11 86197237 86197316 -64586237 - L2 LINE L2 -177 3095 3020 195 236 7 0 chr11 86197954 86198019 -64585534 + MIR SINE MIR 30 95 -113 405 58 0 0 chr11 86198216 86198268 -64585285 + (TG)n Simple_repeat Simple_repeat 1 52 0 245 220 83 0 chr11 86198440 86198549 -64585004 - MER113 DNA MER1_type? -384 137 20 205 338 169 7 chr11 86198556 86198692 -64584861 + MIR SINE MIR 87 244 -18 2724 14 0 0 chr11 86198779 86199071 -64584482 - AluYb8 SINE Alu 0 318 27 188 292 0 0 chr11 86199772 86199820 -64583733 - MIR SINE MIR -60 148 101 240 225 90 22 chr11 86200215 86200304 -64583249 + MIR3 SINE MIR 15 109 -99 183 319 69 0 chr11 86200369 86200441 -64583112 - L2 LINE L2 -54 3218 3142 236 328 95 2 chr11 86200521 86200663 -64582890 - MIR SINE MIR -65 143 37 378 0 0 0 chr11 86201398 86201440 -64582113 + (TG)n Simple_repeat Simple_repeat 2 43 0 2230 118 0 0 chr11 86202473 86202769 -64580784 - AluSq SINE Alu -17 296 1 605 321 24 0 chr11 86202836 86203004 -64580549 + MER91A DNA MER1_type 25 196 0 229 277 0 15 chr11 86203106 86203171 -64580382 + (TAG)n Simple_repeat Simple_repeat 1 64 0 1422 164 0 9 chr11 86203795 86204020 -64579533 - AluJo SINE Alu 0 312 90 184 333 29 20 chr11 86204065 86204167 -64579386 - MIR SINE MIR -68 140 38 193 400 0 0 chr11 86204277 86204357 -64579196 + L2 LINE L2 3102 3181 -91 677 212 50 11 chr11 86204442 86204621 -64578932 - MIR SINE MIR -29 233 48 219 241 168 38 chr11 86206867 86207024 -64576529 + MIR SINE MIR 31 206 -56 925 121 0 0 chr11 86207239 86207363 -64576190 + AluSq/x SINE Alu 2 125 -188 1056 261 124 23 chr11 86207613 86208008 -64575545 - LTR16A LTR ERVL 0 450 16 398 319 32 22 chr11 86208016 86208201 -64575352 - MER117 DNA MER1_type -10 187 1 267 199 11 83 chr11 86209591 86209709 -64573844 + MIR SINE MIR 46 153 -76 1970 108 0 56 chr11 86210654 86210960 -64572593 - AluSq SINE Alu -20 293 5 185 274 65 65 chr11 86210973 86211097 -64572456 - MIR SINE MIR -69 139 16 7690 181 26 31 chr11 86211272 86212072 -64571481 - L1MB7 LINE L1 -9 6175 5372 2313 101 0 7 chr11 86212072 86212378 -64571175 - AluSc SINE Alu -5 304 1 7690 181 26 31 chr11 86212378 86214083 -64569470 - L1MB7 LINE L1 -812 5372 3680 417 20 0 0 chr11 86214083 86214133 -64569420 + (TG)n Simple_repeat Simple_repeat 1 50 0 7690 181 26 31 chr11 86214133 86214244 -64569309 - L1MB7 LINE L1 -2504 3680 3570 207 231 0 0 chr11 86214937 86214989 -64568564 - L2 LINE L2 0 3313 3262 563 179 89 0 chr11 86215156 86215279 -64568274 - L1M4 LINE L1 -664 5514 5381 207 280 53 13 chr11 86215804 86215879 -64567674 + MIR SINE MIR 111 188 -74 471 261 57 13 chr11 86215968 86216125 -64567428 + MIR SINE MIR 35 198 -64 1223 188 34 133 chr11 86217150 86217534 -64566019 - MLT1A1 LTR MaLR -19 346 1 220 299 84 9 chr11 86217844 86217951 -64565602 - L2 LINE L2 -4 3309 3195 194 344 0 0 chr11 86219579 86219640 -64563913 - MIR SINE MIR -115 147 87 706 266 34 17 chr11 86219794 86220031 -64563522 + MIR SINE MIR 15 255 -7 479 286 6 77 chr11 86220946 86221128 -64562425 - MER91A DNA MER1_type -23 173 5 324 326 62 21 chr11 86221156 86221300 -64562253 + MIR3 SINE MIR 46 195 -13 312 143 0 0 chr11 86222052 86222108 -64561445 + (CA)n Simple_repeat Simple_repeat 2 57 0 212 260 0 0 chr11 86222187 86222237 -64561316 - MIR3 SINE MIR -6 202 153 220 247 110 0 chr11 86222420 86222493 -64561060 - MIR SINE MIR -78 130 50 249 251 211 46 chr11 86223677 86223852 -64559701 + MIR SINE MIR 46 249 -13 507 147 42 21 chr11 86224008 86224103 -64559450 + MER104 DNA Tc2 5 101 -79 616 247 37 25 chr11 86224129 86224291 -64559262 - MIR SINE MIR -79 183 20 476 313 192 10 chr11 86224405 86224712 -64558841 - L2 LINE L2 -20 3252 2890 1056 207 13 71 chr11 86224721 86225030 -64558523 + MER33 DNA MER1_type 2 292 -32 262 274 248 46 chr11 86225214 86225367 -64558186 + MIR SINE MIR 20 203 -59 210 273 0 0 chr11 86225399 86225443 -64558110 + L2 LINE L2 3211 3254 -18 222 257 71 0 chr11 86225672 86225742 -64557811 + MIR SINE MIR 31 105 -103 240 327 110 27 chr11 86226539 86226802 -64556751 - L2 LINE L2 -176 3096 2812 236 183 141 14 chr11 86227077 86227148 -64556405 - MER20B DNA MER1_type -676 107 28 3093 201 20 33 chr11 86228162 86228823 -64554730 + MER82 DNA MER2_type 1 652 -1 254 293 13 13 chr11 86228852 86228927 -64554626 - MIR3 SINE MIR -53 155 81 1035 194 82 10 chr11 86228954 86229160 -64554393 + MER58A DNA MER1_type 4 224 0 485 267 14 115 chr11 86229578 86229866 -64553687 - MIR SINE MIR -3 259 1 578 332 49 26 chr11 86230018 86230364 -64553189 - L2 LINE L2 -649 2665 2312 429 205 8 110 chr11 86230949 86231076 -64552477 + L2 LINE L2 3200 3313 0 541 293 85 63 chr11 86231105 86231423 -64552130 - L2 LINE L2 0 3272 2948 1114 170 162 0 chr11 86231728 86232006 -64551547 - MER33 DNA MER1_type -8 316 1 375 292 26 45 chr11 86232486 86232640 -64550913 - MER5B DNA MER1_type -2 176 26 726 220 103 73 chr11 86233305 86233537 -64550016 - MER8 DNA MER2_type 0 239 1 478 266 121 30 chr11 86234426 86234625 -64548928 - MIR SINE MIR -10 252 36 315 278 0 0 chr11 86235083 86235155 -64548398 - MIR SINE MIR -81 181 110 265 73 0 24 chr11 86235819 86235860 -64547693 - L1MB8 LINE L1 -110 6068 6029 408 353 27 16 chr11 86236789 86236973 -64546580 + MIR SINE MIR 77 262 0 448 266 137 7 chr11 86236986 86237125 -64546428 + MER96 DNA MER1_type? 19 175 0 247 276 92 11 chr11 86237509 86237596 -64545957 + L2 LINE L2 3216 3309 -4 1022 122 8 0 chr11 86237608 86237871 -64545682 + (TGGA)n Simple_repeat Simple_repeat 1 265 0 311 268 73 41 chr11 86237888 86238011 -64545542 + L2 LINE L2 3187 3313 0 238 333 29 29 chr11 86238342 86238447 -64545106 - MIR3 SINE MIR -91 117 13 393 270 113 19 chr11 86239023 86239182 -64544371 - MIR SINE MIR -61 201 28 232 211 0 56 chr11 86239966 86240037 -64543516 + L1MC5 LINE L1 7848 7914 -47 207 295 232 13 chr11 86240172 86240396 -64543157 + L2 LINE L2 2807 3079 -193 313 333 17 8 chr11 86240834 86240951 -64542602 + MIR SINE MIR 31 148 -114 1404 243 125 11 chr11 86240979 86241427 -64542126 - LTR33 LTR ERVL -22 499 1 21 0 0 0 chr11 86241760 86241781 -64541772 + AT_rich Low_complexity Low_complexity 1 21 0 181 328 172 8 chr11 86242021 86242143 -64541410 - L2 LINE L2 -3 3269 3128 1071 302 85 17 chr11 86242899 86243478 -64540075 - L1MC4a LINE L1 -1876 5932 5315 276 293 131 47 chr11 86244174 86244365 -64539188 + MIR SINE MIR 2 208 -54 281 256 133 11 chr11 86244384 86244474 -64539079 - MLT1H LTR MaLR -16 533 433 298 248 95 0 chr11 86244620 86244725 -64538828 - MLT1H LTR MaLR -433 116 2 2151 86 0 13 chr11 86244796 86245099 -64538454 + AluSg SINE Alu 1 299 -11 1047 274 75 69 chr11 86245251 86246212 -64537341 - L1MEd LINE L1 -1214 1276 229 226 277 0 31 chr11 86246889 86246954 -64536599 + MIR SINE MIR 30 92 -116 2099 117 0 3 chr11 86247047 86247346 -64536207 + AluSx SINE Alu 1 298 -14 582 285 104 9 chr11 86247450 86247671 -64535882 - MIR SINE MIR -16 246 5 241 260 0 0 chr11 86247824 86247874 -64535679 + L2 LINE L2 3210 3259 -13 793 257 43 36 chr11 86247949 86248202 -64535351 + MIR SINE MIR 8 262 0 201 269 83 28 chr11 86249573 86249681 -64533872 + MIR SINE MIR 3 116 -146 204 125 0 0 chr11 86249872 86249904 -64533649 + (T)n Simple_repeat Simple_repeat 1 32 0 826 98 16 8 chr11 86250084 86250206 -64533347 - AluSq/x SINE Alu -190 123 1 351 322 45 11 chr11 86250342 86250519 -64533034 - L1ME3A LINE L1 0 6170 5988 1021 278 100 26 chr11 86250627 86251006 -64532547 - L1ME3A LINE L1 -222 5948 5537 313 273 91 8 chr11 86251048 86251169 -64532384 + MIR SINE MIR 117 247 -15 222 128 0 0 chr11 86251298 86251337 -64532216 + (TC)n Simple_repeat Simple_repeat 2 40 0 2240 110 0 0 chr11 86251373 86251683 -64531870 - AluSx SINE Alu -2 310 1 576 286 12 12 chr11 86251729 86251890 -64531663 - MIR SINE MIR -44 218 58 257 159 0 23 chr11 86252327 86252371 -64531182 - L2 LINE L2 -210 3062 3020 21 0 0 0 chr11 86252682 86252703 -64530850 + AT_rich Low_complexity Low_complexity 1 21 0 257 89 22 0 chr11 86252868 86252913 -64530640 + (CA)n Simple_repeat Simple_repeat 1 46 0 873 213 16 11 chr11 86253101 86253289 -64530264 + MER5A DNA MER1_type 1 189 0 617 203 183 0 chr11 86253302 86253455 -64530098 + MER5A DNA MER1_type 9 189 0 1527 234 73 44 chr11 86254468 86254964 -64528589 + L1ME4a LINE L1 5574 6083 -38 208 238 0 0 chr11 86255598 86255640 -64527913 + (CA)n Simple_repeat Simple_repeat 1 42 0 292 293 38 19 chr11 86255704 86255810 -64527743 - MIR SINE MIR -39 223 116 310 270 0 0 chr11 86256770 86256833 -64526720 + MIR SINE MIR 66 128 -134 716 251 48 27 chr11 86257131 86257318 -64526235 - MIR SINE MIR -71 191 1 261 252 194 19 chr11 86257366 86257469 -64526084 - MIR SINE MIR -57 205 85 337 339 108 0 chr11 86257524 86257654 -64525899 + MIR SINE MIR 117 260 -2 457 246 92 58 chr11 86257764 86257979 -64525574 + MIR SINE MIR 5 235 -27 1717 168 3 10 chr11 86258284 86258597 -64524956 - AluSx SINE Alu 0 312 1 2449 144 144 9 chr11 86258617 86258656 -64524897 - MLT2B1 LTR ERVL 0 520 488 213 39 0 0 chr11 86258656 86258682 -64524871 + (GA)n Simple_repeat Simple_repeat 1 26 0 2449 144 144 9 chr11 86258682 86259100 -64524453 - MLT2B1 LTR ERVL -32 488 1 2203 103 0 0 chr11 86259645 86259946 -64523607 - AluSx SINE Alu -11 301 1 491 304 14 0 chr11 86260205 86260343 -64523210 - LTR67 LTR ERVL -4 553 414 2204 82 0 7 chr11 86262017 86262310 -64521243 - AluY SINE Alu -20 291 1 482 304 65 16 chr11 86263150 86263334 -64520219 - MIR SINE MIR -50 212 20 308 299 194 51 chr11 86264033 86264250 -64519303 - L2 LINE L2 -1 3271 3024 208 326 174 0 chr11 86265226 86265312 -64518241 + MIR SINE MIR 18 118 -90 1973 134 6 13 chr11 86265320 86265660 -64517893 - AluSx SINE Alu 0 312 1 410 288 38 8 chr11 86265784 86265916 -64517637 - MIR SINE MIR -77 185 50 291 343 83 0 chr11 86265904 86266012 -64517541 + L2 LINE L2 3194 3310 -3 * 24 0 0 0 chr11 86266051 86266075 -64517478 + AT_rich Low_complexity Low_complexity 1 24 0 299 212 0 26 chr11 86266075 86266160 -64517393 - L1P2 LINE L1 -675 5446 5379 357 297 88 42 chr11 86266793 86266985 -64516568 - MIR SINE MIR -42 220 20 264 107 0 36 chr11 86267404 86267460 -64516093 + FAM SINE Alu 126 179 0 898 182 0 17 chr11 86267586 86267762 -64515791 + AluJo SINE Alu 120 292 -20 776 288 74 61 chr11 86267787 86268302 -64515251 - L2 LINE L2 0 3313 2783 2133 161 44 10 chr11 86268447 86268857 -64514696 + L1MC3 LINE L1 7342 7765 -20 1197 275 83 22 chr11 86270159 86270650 -64512903 - LTR33A LTR ERVL -2 521 1 21 0 0 0 chr11 86271719 86271740 -64511813 + AT_rich Low_complexity Low_complexity 1 21 0 900 166 6 30 chr11 86271811 86271980 -64511573 + AluJo SINE Alu 1 165 -147 747 191 60 38 chr11 86271987 86272170 -64511383 + AluSg/x SINE Alu 104 290 -22 1587 207 62 51 chr11 86272373 86272647 -64510906 - MLT1C LTR MaLR -8 459 177 1714 133 18 4 chr11 86272647 86272925 -64510628 - AluSp SINE Alu -31 282 1 1587 207 62 51 chr11 86272925 86273104 -64510449 - MLT1C LTR MaLR -290 177 1 304 272 228 6 chr11 86273506 86273664 -64509889 - MLT1I LTR MaLR -118 291 99 1551 101 35 0 chr11 86274446 86274674 -64508879 - L1PA10 LINE L1 -5 6163 5928 4943 81 13 3 chr11 86274674 86275372 -64508181 + L1PA10 LINE L1 5233 5936 -232 185 256 0 23 chr11 86276352 86276395 -64507158 - L2 LINE L2 -16 3256 3215 222 338 0 40 chr11 86276817 86276891 -64506662 - L2 LINE L2 -86 3186 3116 376 285 102 7 chr11 86277109 86277246 -64506307 - MIR SINE MIR -106 156 7 345 359 36 21 chr11 86277940 86278132 -64505421 + MIR SINE MIR 48 242 -20 218 361 41 41 chr11 86278569 86278666 -64504887 + L2 LINE L2 3116 3212 -60 210 118 0 0 chr11 86278681 86278715 -64504838 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 2070 100 24 3 chr11 86279422 86279713 -64503840 + AluSq SINE Alu 1 297 -16 455 281 41 27 chr11 86280343 86280489 -64503064 - MIR3 SINE MIR -3 205 58 1929 187 31 18 chr11 86280574 86280965 -64502588 - MSTD LTR MaLR 0 396 1 281 292 124 77 chr11 86281133 86281366 -64502187 - L2 LINE L2 -27 3245 3002 787 276 61 76 chr11 86282448 86282778 -64500775 - MLT1I LTR MaLR -14 395 71 242 307 57 0 chr11 86282829 86282917 -64500636 - MIR SINE MIR -111 151 59 315 355 0 9 chr11 86282944 86283051 -64500502 - L2 LINE L2 0 3313 3208 2036 116 0 20 chr11 86283143 86283446 -64500107 + AluSq SINE Alu 1 297 -16 269 252 107 29 chr11 86283498 86283601 -64499952 - MIR SINE MIR -38 224 114 477 289 70 50 chr11 86283958 86284159 -64499394 + L2 LINE L2 3093 3297 -16 193 369 47 20 chr11 86284584 86284733 -64498820 + L3 LINE CR1 624 776 -801 610 203 39 0 chr11 86285345 86285473 -64498080 + L1M4 LINE L1 4869 5001 -1145 1869 195 128 13 chr11 86285579 86286041 -64497512 - Charlie1b DNA MER1_type -5 518 4 341 364 14 21 chr11 86286193 86286333 -64497220 + L2 LINE L2 2926 3064 -208 205 133 0 0 chr11 86286697 86286727 -64496826 - MIR SINE MIR -19 243 214 227 235 0 20 chr11 86286802 86286853 -64496700 - MIR SINE MIR -167 95 46 182 229 14 114 chr11 86287079 86287149 -64496404 - L2 LINE L2 -76 3237 3175 339 288 139 45 chr11 86287414 86287616 -64495937 - MIR SINE MIR -6 256 38 680 298 70 0 chr11 86288669 86288897 -64494656 - MIR SINE MIR -6 256 13 534 191 0 11 chr11 86288967 86289061 -64494492 - MIR SINE MIR -63 199 107 224 271 31 42 chr11 86289449 86289545 -64494008 + L2 LINE L2 2720 2814 -500 207 0 0 0 chr11 86289551 86289574 -64493979 + (T)n Simple_repeat Simple_repeat 1 23 0 2122 121 0 3 chr11 86289709 86290015 -64493538 - AluJb SINE Alu -7 305 1 675 264 21 51 chr11 86290058 86290293 -64493260 + MIR SINE MIR 35 262 0 264 298 94 12 chr11 86290336 86290507 -64493046 + L2 LINE L2 2917 3101 -171 2484 77 57 0 chr11 86290756 86291092 -64492461 - THE1A LTR MaLR 0 355 1 2586 207 65 5 chr11 86291841 86292454 -64491099 + L1MD2 LINE L1 5710 6359 0 793 295 60 26 chr11 86292689 86293069 -64490484 - L1ME LINE L1 -354 5816 5424 247 180 66 33 chr11 86293147 86293208 -64490345 + L2 LINE L2 3250 3312 -1 1623 131 29 131 chr11 86293301 86293714 -64489839 - L1MB8 LINE L1 -5 6173 5803 445 121 0 0 chr11 86293747 86293811 -64489742 + Tigger7 DNA MER2_type 2326 2389 -198 293 295 0 0 chr11 86293811 86293872 -64489681 - MER2 DNA MER2_type 0 345 285 514 206 10 0 chr11 86293889 86293986 -64489567 - MER2 DNA MER2_type -247 98 1 * 1143 134 65 0 chr11 86293986 86294168 -64489385 + Tigger7 DNA MER2_type 2288 2481 -6 1639 167 62 15 chr11 86294173 86294497 -64489056 - L1M4 LINE L1 -379 5805 5467 567 277 87 16 chr11 86294502 86294686 -64488867 + MIR SINE MIR 25 221 -41 426 251 212 49 chr11 86295457 86295844 -64487709 + L2 LINE L2 2325 2774 -540 280 383 57 10 chr11 86295856 86296065 -64487488 + L2 LINE L2 3089 3307 -6 260 275 65 58 chr11 86296114 86296265 -64487288 - MIR SINE MIR -68 140 40 415 200 11 67 chr11 86296316 86296406 -64487147 + MER5A DNA MER1_type 3 87 -102 251 236 276 0 chr11 86297040 86297163 -64486390 + MIR3 SINE MIR 31 187 -21 192 297 81 36 chr11 86297938 86298049 -64485504 - L3 LINE CR1 -90 1487 1372 387 336 73 0 chr11 86298098 86298235 -64485318 - MIR SINE MIR 0 262 116 520 278 14 21 chr11 86298258 86298467 -64485086 - MIR SINE MIR 0 262 1 569 304 121 41 chr11 86298504 86298918 -64484635 + L2 LINE L2 2826 3272 0 354 250 35 26 chr11 86299142 86299258 -64484295 + MER5B DNA MER1_type 1 117 -61 365 200 21 63 chr11 86300204 86300299 -64483254 - MER5B DNA MER1_type -81 97 7 186 277 77 0 chr11 86301068 86301133 -64482420 - MIR SINE MIR -76 186 117 405 257 147 22 chr11 86301189 86301367 -64482186 - MIR SINE MIR -54 208 11 2702 88 3 0 chr11 86301388 86301739 -64481814 - THE1A LTR MaLR 0 355 4 11787 98 6 2 chr11 86301742 86303316 -64480237 - THE1A-int LTR MaLR 0 1580 1 2718 88 8 3 chr11 86303316 86303669 -64479884 - THE1A LTR MaLR 0 355 1 276 140 0 150 chr11 86303776 86303876 -64479677 + MIR SINE MIR 68 152 -110 292 265 59 20 chr11 86304287 86304389 -64479164 + MIR SINE MIR 44 149 -59 2564 16 63 13 chr11 86304836 86305151 -64478402 - SVA Other Other 0 1386 1056 1125 223 185 50 chr11 86305251 86305307 -64478246 + HAL1 LINE L1 413 460 -2047 2077 152 22 33 chr11 86305307 86305356 -64478197 - THE1B LTR MaLR 0 364 316 2091 96 0 3 chr11 86305356 86305660 -64477893 - AluY SINE Alu 0 304 2 2077 152 22 33 chr11 86305660 86305977 -64477576 - THE1B LTR MaLR -48 316 1 1125 223 185 50 chr11 86305977 86306035 -64477518 + HAL1 LINE L1 460 509 -1998 2650 122 58 15 chr11 86306035 86306445 -64477108 + MSTA LTR MaLR 1 428 0 1125 223 185 50 chr11 86306445 86306528 -64477025 + HAL1 LINE L1 509 579 -1928 2151 161 112 28 chr11 86306528 86306791 -64476762 - MLT1D LTR MaLR 0 505 265 1930 102 0 53 chr11 86306791 86307114 -64476439 - AluY SINE Alu -5 306 1 2151 161 112 28 chr11 86307114 86307316 -64476237 - MLT1D LTR MaLR -240 265 1 1125 223 185 50 chr11 86307316 86307591 -64475962 + HAL1 LINE L1 579 951 -1556 2361 227 103 28 chr11 86307614 86308257 -64475296 + HAL1 LINE L1 1089 1682 -825 222 37 0 0 chr11 86308257 86308284 -64475269 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1637 136 39 25 chr11 86308284 86308564 -64474989 - AluJb SINE Alu -28 284 1 2361 227 103 28 chr11 86308564 86308676 -64474877 + HAL1 LINE L1 1681 1902 -605 188 302 0 0 chr11 86309657 86309700 -64473853 - L2 LINE L2 -9 3304 3262 2156 161 12 47 chr11 86310419 86310823 -64472730 + MLT1B LTR MaLR 1 390 0 444 276 19 0 chr11 86311208 86311313 -64472240 + HAL1 LINE L1 186 292 -2215 693 221 45 114 chr11 86361433 86361717 -64421836 + HAL1b LINE L1 723 970 -378 1310 242 111 14 chr11 86361717 86362142 -64421411 + MLT1C LTR MaLR 1 466 -1 693 221 45 114 chr11 86362142 86362278 -64421275 + HAL1b LINE L1 970 1114 -234 315 0 0 0 chr11 86362401 86362436 -64421117 + (T)n Simple_repeat Simple_repeat 1 35 0 24 0 0 0 chr11 86362459 86362483 -64421070 + GC_rich Low_complexity Low_complexity 1 24 0 2502 60 0 13 chr11 86362617 86362932 -64420621 - AluY SINE Alu 0 311 1 2078 141 0 20 chr11 86362992 86363298 -64420255 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr11 86363376 86363398 -64420155 + AT_rich Low_complexity Low_complexity 1 22 0 227 205 115 26 chr11 86363600 86363678 -64419875 - L1ME LINE L1 -655 5466 5382 4040 194 38 12 chr11 86364044 86365830 -64417723 - L1MB5 LINE L1 -36 6138 4301 336 230 0 40 chr11 86365835 86365935 -64417618 - L1MB5 LINE L1 -2133 4013 3918 360 288 135 0 chr11 86365935 86366105 -64417448 - L1P LINE L1 -2303 3843 3651 213 311 90 33 chr11 86366704 86366826 -64416727 + L2 LINE L2 3144 3272 0 286 242 141 0 chr11 86367328 86367427 -64416126 + MIR SINE MIR 91 203 -59 513 232 20 40 chr11 86367565 86367716 -64415837 - MER97c DNA MER1_type? -916 174 27 361 295 68 53 chr11 86368435 86368642 -64414911 + L2 LINE L2 2487 2696 -618 1956 152 3 10 chr11 86368857 86369153 -64414400 - AluSx SINE Alu -16 296 3 319 240 74 41 chr11 86369998 86370119 -64413434 - MIR SINE MIR -16 246 122 216 295 72 43 chr11 86370421 86370560 -64412993 + MIR SINE MIR 114 256 -6 320 225 8 0 chr11 86370642 86370771 -64412782 + (TG)n Simple_repeat Simple_repeat 1 130 0 521 273 7 7 chr11 86372063 86372206 -64411347 + MIR SINE MIR 5 147 -115 2206 125 3 6 chr11 86372277 86372588 -64410965 - AluSx SINE Alu -2 310 1 695 249 63 46 chr11 86372767 86373004 -64410549 + MIR SINE MIR 1 241 -21 233 297 0 33 chr11 86373367 86373458 -64410095 + MIR3 SINE MIR 97 184 -24 286 372 36 7 chr11 86374247 86374384 -64409169 + MIR SINE MIR 9 149 -113 209 130 14 159 chr11 86374676 86374745 -64408808 - L2 LINE L2 -27 3245 3187 * 215 299 30 0 chr11 86374726 86374793 -64408760 + MIR SINE MIR 134 202 -60 1414 265 63 62 chr11 86374843 86375668 -64407885 - L2 LINE L2 -5 3308 2244 284 291 93 66 chr11 86376361 86376543 -64407010 + MIR3 SINE MIR 11 197 -11 250 327 122 35 chr11 86376813 86377067 -64406486 + L2 LINE L2 2338 2613 -701 349 333 104 0 chr11 86377244 86377436 -64406117 - MIR SINE MIR -7 255 44 292 308 62 97 chr11 86377616 86377957 -64405596 + L2 LINE L2 2943 3271 -1 236 223 204 0 chr11 86378117 86378220 -64405333 - MIR SINE MIR -1 261 138 1998 205 63 11 chr11 86378539 86378983 -64404570 + MLT1C LTR MaLR 1 467 0 892 171 13 7 chr11 86379825 86380007 -64403546 + FRAM SINE Alu 1 180 0 3748 106 57 39 chr11 86380292 86380889 -64402664 + MER4B LTR ERV1 2 609 -1 189 0 0 0 chr11 86381062 86381083 -64402470 + (TCTCC)n Simple_repeat Simple_repeat 1 21 0 320 155 23 155 chr11 86382561 86382690 -64400863 + HsTC2 DNA Tc2 1784 1895 -3 474 299 27 7 chr11 86382962 86383109 -64400444 - MER117 DNA MER1_type -43 154 5 316 206 14 14 chr11 86383762 86383835 -64399718 + MLT1F LTR MaLR 1 73 -469 497 206 147 22 chr11 86383838 86383974 -64399579 + MLT1E LTR MaLR 441 593 0 212 335 71 53 chr11 86384001 86384171 -64399382 - MIR SINE MIR -70 192 20 389 264 144 30 chr11 86384433 86384600 -64398953 - MIR SINE MIR -29 233 48 313 312 0 0 chr11 86385736 86385813 -64397740 - MIR SINE MIR -109 153 77 665 342 95 9 chr11 86385912 86386228 -64397325 + L3 LINE CR1 1188 1530 -47 1443 189 146 0 chr11 86386454 86386714 -64396839 - AluJo SINE Alu -4 298 1 335 286 75 0 chr11 86386756 86386889 -64396664 + L1P LINE L1 4903 5045 -1101 28 0 0 0 chr11 86387935 86387963 -64395590 + AT_rich Low_complexity Low_complexity 1 28 0 707 279 128 6 chr11 86388023 86388360 -64395193 - L2 LINE L2 -17 3296 2919 246 128 0 0 chr11 86388732 86388771 -64394782 + (ATGGTG)n Simple_repeat Simple_repeat 4 42 0 427 298 50 7 chr11 86388816 86388957 -64394596 - MIR SINE MIR -85 177 31 988 254 32 9 chr11 86389850 86390067 -64393486 - MER58A DNA MER1_type -1 223 2 252 274 0 0 chr11 86390131 86390193 -64393360 - MIR3 SINE MIR -20 188 127 1244 281 86 3 chr11 86390275 86390660 -64392893 + MLT1J LTR MaLR 3 419 -92 682 289 100 43 chr11 86390660 86391152 -64392401 - L1MDa LINE L1 -4674 1541 1022 43868 33 22 1 chr11 86391167 86397194 -64386359 + L1PA3 LINE L1 2 6155 0 1269 317 113 18 chr11 86397283 86398214 -64385339 - L1MDa LINE L1 -5341 1055 37 281 208 0 94 chr11 86398221 86398317 -64385236 + MLT1J LTR MaLR 417 503 -8 306 305 0 78 chr11 86398333 86398461 -64385092 - MIR SINE MIR -34 228 111 373 366 72 23 chr11 86399170 86399517 -64384036 + LTR16C LTR ERVL 128 491 0 257 250 46 86 chr11 86399951 86400103 -64383450 + L2 LINE L2 2613 2758 -556 200 384 101 6 chr11 86400157 86400316 -64383237 + L2 LINE L2 2872 3045 -227 516 271 100 38 chr11 86400578 86400788 -64382765 - MIR SINE MIR -6 256 34 616 259 0 0 chr11 86400815 86400946 -64382607 + MER94 DNA DNA 4 134 0 2444 127 37 11 chr11 86401179 86401534 -64382019 + THE1B LTR MaLR 1 364 0 1659 176 24 3 chr11 86401569 86401858 -64381695 - AluJo SINE Alu -15 297 3 563 271 52 76 chr11 86401995 86402246 -64381307 - MIR SINE MIR 0 262 18 23 33 0 0 chr11 86402754 86402784 -64380769 + AT_rich Low_complexity Low_complexity 1 30 0 232 335 92 20 chr11 86402788 86402940 -64380613 - L2 LINE L2 -239 3033 2871 588 165 0 0 chr11 86403881 86403978 -64379575 + MLT1B LTR MaLR 1 97 -293 1888 142 17 0 chr11 86404044 86404333 -64379220 + MLT1B LTR MaLR 97 390 0 879 179 45 0 chr11 86404369 86404525 -64379028 - AluJb SINE Alu -17 295 133 1031 215 29 0 chr11 86404526 86404735 -64378818 - MER58A DNA MER1_type -9 215 1 354 278 106 56 chr11 86405451 86405631 -64377922 - MIR3 SINE MIR -13 195 7 23 0 0 0 chr11 86405731 86405754 -64377799 + AT_rich Low_complexity Low_complexity 1 23 0 185 302 88 50 chr11 86406065 86406224 -64377329 + MIR3 SINE MIR 20 184 -24 439 251 200 17 chr11 86406744 86406919 -64376634 + MIR SINE MIR 25 231 -31 309 326 43 14 chr11 86407605 86407743 -64375810 - MIR3 SINE MIR -2 206 65 1644 191 28 36 chr11 86408078 86408435 -64375118 + MLT1A1 LTR MaLR 12 365 0 468 0 0 0 chr11 86408609 86408661 -64374892 + (TTA)n Simple_repeat Simple_repeat 2 53 0 1059 245 37 0 chr11 86408947 86409163 -64374390 - MER58A DNA MER1_type 0 224 1 367 289 63 42 chr11 86409391 86409581 -64373972 - MIR SINE MIR -46 216 23 511 229 189 0 chr11 86409762 86409884 -64373669 + MER5A DNA MER1_type 39 183 -6 225 0 0 0 chr11 86410261 86410286 -64373267 + (CAT)n Simple_repeat Simple_repeat 2 26 0 821 282 69 0 chr11 86410314 86410516 -64373037 - MIR SINE MIR -42 220 5 344 296 11 11 chr11 86410539 86410627 -64372926 - MIR SINE MIR -161 101 14 314 335 55 28 chr11 86410729 86410911 -64372642 + L2 LINE L2 3073 3259 -13 1137 130 101 0 chr11 86410957 86411126 -64372427 - MER5A DNA MER1_type 0 189 4 286 363 37 15 chr11 86412006 86412141 -64371412 + L2 LINE L2 3125 3262 -10 264 280 56 24 chr11 86412130 86412255 -64371298 + L3 LINE CR1 1239 1367 -210 * 270 240 168 24 chr11 86412259 86412384 -64371169 + MIR SINE MIR 120 262 0 212 260 20 0 chr11 86412461 86412511 -64371042 + CT-rich Low_complexity Low_complexity 2 52 0 206 398 0 8 chr11 86412525 86412648 -64370905 + (TCTA)n Simple_repeat Simple_repeat 2 123 0 578 260 94 31 chr11 86413288 86413511 -64370042 + MIR SINE MIR 20 256 -6 593 294 127 25 chr11 86413516 86413832 -64369721 + L3 LINE CR1 1042 1389 -188 237 216 107 24 chr11 86414235 86414317 -64369236 + MIR SINE MIR 59 113 -95 271 304 82 30 chr11 86415827 86415962 -64367591 + MIR SINE MIR 34 175 -87 464 261 9 0 chr11 86418009 86418124 -64365429 - MIR SINE MIR -80 182 67 2850 102 6 3 chr11 86418180 86418543 -64365010 - THE1B LTR MaLR 0 364 1 184 345 81 0 chr11 86418556 86418643 -64364910 + L2 LINE L2 2656 2749 -565 1820 157 44 14 chr11 86418998 86419292 -64364261 - MER1B DNA MER1_type -36 303 1 1461 148 35 0 chr11 86419292 86419521 -64364032 + MSTC LTR MaLR 191 427 -1 238 356 51 8 chr11 86420974 86421092 -64362461 + MIR SINE MIR 17 139 -69 1314 264 113 13 chr11 86421780 86422321 -64361232 + L1ME4a LINE L1 5526 6120 -1 220 191 0 0 chr11 86422666 86422708 -64360845 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 226 143 95 0 chr11 86422869 86422911 -64360642 + L2 LINE L2 3227 3272 0 217 374 33 0 chr11 86423029 86423120 -64360433 - MIR SINE MIR -85 123 30 337 285 88 92 chr11 86423147 86423407 -64360146 + L2 LINE L2 3005 3263 -9 465 248 201 48 chr11 86424007 86424301 -64359252 + MLT1K LTR MaLR 1 339 -249 1904 109 81 3 chr11 86424340 86424623 -64358930 + AluSq SINE Alu 1 305 -8 35908 89 8 16 chr11 86424641 86429675 -64353878 + L1P LINE L1 11 5003 -1143 699 259 33 24 chr11 86429726 86429938 -64353615 - LTR33 LTR ERVL -307 214 1 333 185 28 74 chr11 86429938 86429990 -64353563 + MLT1K LTR MaLR 467 513 -75 2030 123 3 29 chr11 86429990 86430298 -64353255 - AluSx SINE Alu -12 300 1 333 185 28 74 chr11 86430298 86430353 -64353200 + MLT1K LTR MaLR 513 569 -19 2469 191 4 34 chr11 86430418 86430915 -64352638 - L1MB4 LINE L1 -2 6178 5697 330 299 38 70 chr11 86431885 86432042 -64351511 - MIR SINE MIR -1 261 110 208 343 0 34 chr11 86432181 86432327 -64351226 + CT-rich Low_complexity Low_complexity 1 141 0 1562 117 19 0 chr11 86432687 86432900 -64350653 + AluSc SINE Alu 1 217 -92 315 248 24 48 chr11 86433101 86433226 -64350327 - MIR SINE MIR -107 155 34 1505 161 46 56 chr11 86433968 86434272 -64349281 - AluJo SINE Alu -11 301 1 474 262 14 14 chr11 86434296 86434441 -64349112 - MIR SINE MIR -8 254 110 2107 137 0 3 chr11 86434677 86434983 -64348570 + AluJb SINE Alu 1 305 -7 23 0 0 0 chr11 86435158 86435181 -64348372 + GC_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr11 86435202 86435225 -64348328 + (A)n Simple_repeat Simple_repeat 1 23 0 1401 279 157 20 chr11 86435317 86436271 -64347282 - HAL1 LINE L1 -133 2374 1290 210 293 12 24 chr11 86436348 86436430 -64347123 - MIR SINE MIR -14 248 168 203 397 35 0 chr11 86436636 86436752 -64346801 - MIR SINE MIR -95 167 48 411 289 74 0 chr11 86436809 86436944 -64346609 + MER103 DNA DNA 3 147 -19 501 299 73 102 chr11 86437170 86437622 -64345931 + L2 LINE L2 2875 3313 0 318 282 24 0 chr11 86438396 86438481 -64345072 + L2 LINE L2 3186 3272 0 183 297 0 27 chr11 86438508 86438582 -64344971 - MIR SINE MIR -96 166 95 2028 191 0 32 chr11 86438653 86439029 -64344524 + MLT1A1 LTR MaLR 2 365 0 218 300 108 96 chr11 86439181 86439431 -64344122 + L2 LINE L2 2927 3179 -93 1844 162 0 23 chr11 86440169 86440472 -64343081 - AluJb SINE Alu -16 296 1 397 136 123 12 chr11 86441578 86441659 -64341894 - MIR3 SINE MIR -9 199 110 230 362 53 48 chr11 86441961 86442168 -64341385 + L2 LINE L2 2957 3164 -108 1749 232 82 23 chr11 86442953 86443440 -64340113 + LTR33 LTR ERVL 4 519 -2 1851 150 0 0 chr11 86443445 86443738 -64339815 + L1MB3 LINE L1 5891 6183 0 227 77 0 26 chr11 86444270 86444309 -64339244 + (TTATA)n Simple_repeat Simple_repeat 2 39 0 5005 75 11 0 chr11 86445098 86445721 -64337832 - L1PA8 LINE L1 -1 6171 5542 510 218 7 35 chr11 86445984 86446126 -64337427 + L1ME4a LINE L1 5538 5675 -446 272 228 323 24 chr11 86446102 86446229 -64337324 + L1ME4a LINE L1 5881 6045 -76 * 281 104 42 0 chr11 86446251 86446299 -64337254 - L1MB1 LINE L1 -3 6165 6116 * 1679 174 33 47 chr11 86446284 86446646 -64336907 - L1 LINE L1 -1085 5061 4705 * 1776 199 35 3 chr11 86446636 86447008 -64336545 - L1 LINE L1 -1680 4466 4083 428 353 75 21 chr11 86447013 86447631 -64335922 + L2 LINE L2 2658 3311 -2 209 279 115 25 chr11 86447738 86447860 -64335693 + MIR SINE MIR 124 256 -6 258 346 103 88 chr11 86448545 86448874 -64334679 + L2 LINE L2 2935 3268 -4 225 296 184 0 chr11 86448893 86448991 -64334562 - L2 LINE L2 -12 3301 3186 185 330 68 0 chr11 86450672 86450760 -64332793 - MIR SINE MIR -74 188 95 268 215 0 15 chr11 86451213 86451278 -64332275 + (CA)n Simple_repeat Simple_repeat 1 64 0 586 198 136 12 chr11 86451286 86451448 -64332105 + MER112 DNA MER1_type 77 258 -2 1909 261 156 5 chr11 86451452 86452215 -64331338 + L2 LINE L2 2118 2995 -318 1711 163 33 96 chr11 86452218 86452647 -64330906 - MLT2D LTR ERVL -3 411 10 888 257 45 67 chr11 86452651 86452982 -64330571 + L2 LINE L2 2990 3313 0 192 321 85 66 chr11 86453284 86453496 -64330057 - L2 LINE L2 -188 3084 2869 180 200 0 0 chr11 86454157 86454202 -64329351 + (TCTCTG)n Simple_repeat Simple_repeat 6 50 0 256 284 23 34 chr11 86454285 86454373 -64329180 + MIR SINE MIR 44 130 -78 322 297 40 61 chr11 86454406 86454554 -64328999 + MIR3 SINE MIR 3 147 -61 296 250 73 4 chr11 86454584 86454683 -64328870 + MIR SINE MIR 7 109 -99 604 325 32 12 chr11 86454683 86454935 -64328618 - MIR SINE MIR 0 262 6 265 319 73 31 chr11 86456167 86456358 -64327195 + L2 LINE L2 2686 2884 -430 322 364 68 0 chr11 86456858 86456990 -64326563 + MIR3 SINE MIR 34 174 -34 223 288 186 0 chr11 86457016 86457134 -64326419 - L2 LINE L2 -1 3271 3132 621 291 78 35 chr11 86457237 86457495 -64326058 + L3 LINE CR1 1307 1575 -2 367 293 60 53 chr11 86458045 86458227 -64325326 - MIR SINE MIR -70 192 13 880 279 43 0 chr11 86458383 86458616 -64324937 - MIR SINE MIR -8 254 12 707 290 5 0 chr11 86458971 86459157 -64324396 + MER117 DNA MER1_type 11 197 0 255 325 40 60 chr11 86459607 86459859 -64323694 + L2 LINE L2 2959 3205 -108 213 255 47 94 chr11 86460209 86460315 -64323238 + L2 LINE L2 2715 2815 -499 251 331 76 80 chr11 86460376 86460627 -64322926 + L2 LINE L2 2985 3234 -38 297 310 10 30 chr11 86460651 86460751 -64322802 - MIR SINE MIR -58 150 53 328 291 63 42 chr11 86460849 86461086 -64322467 - Charlie8 DNA MER1_type -2172 245 4 305 333 104 10 chr11 86461808 86462029 -64321524 + MIR SINE MIR 15 256 -6 219 231 19 0 chr11 86462194 86462246 -64321307 + L2 LINE L2 3261 3313 0 301 373 24 0 chr11 86462488 86462614 -64320939 - L2 LINE L2 -226 3046 2918 325 310 118 27 chr11 86462647 86462834 -64320719 - MIR SINE MIR -13 249 46 298 330 103 10 chr11 86463604 86463798 -64319755 + MIR SINE MIR 21 232 -30 560 281 20 0 chr11 86464626 86464779 -64318774 + MIR SINE MIR 94 249 -13 21 36 0 0 chr11 86465858 86465886 -64317667 + AT_rich Low_complexity Low_complexity 1 28 0 318 297 83 35 chr11 86466479 86466624 -64316929 - L2 LINE L2 -4 3268 3117 316 224 59 0 chr11 86466817 86466902 -64316651 - MIR SINE MIR 0 262 173 468 171 12 0 chr11 86466944 86467026 -64316527 - MIR SINE MIR -64 198 116 280 277 109 17 chr11 86467066 86467185 -64316368 - MIR3 SINE MIR -72 136 7 2198 133 37 0 chr11 86467304 86467681 -64315872 - L1 LINE L1 -1309 4837 4447 273 279 0 0 chr11 86467727 86467788 -64315765 + MLT1I LTR MaLR 345 405 -4 223 273 202 10 chr11 86467791 86467890 -64315663 - MIR SINE MIR -98 164 47 2273 76 20 10 chr11 86468943 86469247 -64314306 + AluY SINE Alu 5 311 0 634 297 79 60 chr11 86469475 86470095 -64313458 + L1MC4a LINE L1 5255 5624 -546 383 329 20 34 chr11 86470344 86470493 -64313060 + L3 LINE CR1 1426 1572 -5 285 277 169 33 chr11 86471251 86471464 -64312089 + MIR SINE MIR 2 243 -19 261 235 164 0 chr11 86471813 86471910 -64311643 + MIR SINE MIR 63 173 -66 189 195 0 0 chr11 86472063 86472104 -64311449 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 2186 142 0 0 chr11 86472527 86472838 -64310715 - AluSx SINE Alu -1 311 1 204 414 0 0 chr11 86472846 86472933 -64310620 + MIR3 SINE MIR 110 196 -12 478 314 130 14 chr11 86474570 86474777 -64308776 + MIR SINE MIR 20 250 -12 1942 133 0 40 chr11 86475134 86475435 -64308118 - AluJo SINE Alu -19 293 5 198 103 0 0 chr11 86475511 86475540 -64308013 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 2300 123 14 6 chr11 86475746 86476104 -64307449 - MER46B DNA MER2_type 0 236 1 267 300 79 14 chr11 86476191 86476331 -64307222 - MIR SINE MIR -15 247 99 228 316 20 0 chr11 86476572 86476670 -64306883 - L2 LINE L2 -226 3046 2947 22 0 0 0 chr11 86476846 86476868 -64306685 + AT_rich Low_complexity Low_complexity 1 22 0 375 299 16 16 chr11 86477221 86477348 -64306205 + MIR3 SINE MIR 69 195 -13 252 293 78 78 chr11 86477722 86477913 -64305640 + MIR3 SINE MIR 17 207 -1 228 311 112 65 chr11 86477925 86478246 -64305307 - L2 LINE L2 -1 3271 2936 243 182 143 0 chr11 86478342 86478419 -64305134 - MIR SINE MIR -48 214 127 196 310 0 28 chr11 86478802 86478873 -64304680 - L2 LINE L2 0 3272 3204 298 299 37 9 chr11 86479082 86479189 -64304364 + L2 LINE L2 3204 3313 0 211 246 14 14 chr11 86479235 86479304 -64304249 + L2 LINE L2 3245 3313 0 221 294 20 0 chr11 86479315 86479366 -64304187 - L2 LINE L2 -83 3189 3138 249 291 94 24 chr11 86479565 86479692 -64303861 + MLT1K LTR MaLR 281 416 -172 819 233 17 11 chr11 86480767 86480943 -64302610 + MER45A DNA AcHobo 2 178 0 493 271 8 8 chr11 86481459 86481581 -64301972 - MER94 DNA DNA -4 130 9 217 309 0 0 chr11 86481602 86481657 -64301896 + L2 LINE L2 3251 3305 -8 696 214 15 8 chr11 86481693 86481824 -64301729 + AluJb SINE Alu 134 265 -47 195 42 0 0 chr11 86481824 86481848 -64301705 + (GGGA)n Simple_repeat Simple_repeat 3 26 0 807 170 6 12 chr11 86481851 86482157 -64301396 + GA-rich Low_complexity Low_complexity 1 304 0 1945 153 140 11 chr11 86483232 86483611 -64299942 - MSTA LTR MaLR 0 428 1 1120 247 82 32 chr11 86483820 86484225 -64299328 - L2 LINE L2 -515 2799 2375 1592 92 119 0 chr11 86484800 86485061 -64298492 - L1MA5A LINE L1 -10 6287 5996 604 270 6 49 chr11 86485241 86485554 -64297999 - MLT1I LTR MaLR 0 409 57 346 233 0 22 chr11 86485904 86485994 -64297559 - MIR SINE MIR -66 196 109 1519 111 17 8 chr11 86486320 86486554 -64296999 + THE1A-int LTR MaLR 1345 1580 0 2356 125 8 3 chr11 86486554 86486907 -64296646 + THE1A LTR MaLR 1 355 0 788 202 0 42 chr11 86486935 86487103 -64296450 + FRAM SINE Alu 1 161 -5 1384 190 56 7 chr11 86487275 86487603 -64295950 + AluJb SINE Alu 4 344 0 198 268 28 56 chr11 86488131 86488202 -64295351 + MIR SINE MIR 6 74 -188 428 338 29 14 chr11 86488335 86488545 -64295008 - MIR SINE MIR -3 259 47 2133 107 0 0 chr11 86488654 86488925 -64294628 + AluSc SINE Alu 1 271 -38 1661 197 3 16 chr11 86488929 86489233 -64294320 + AluJo SINE Alu 1 300 -12 504 14 41 0 chr11 86489255 86489328 -64294225 + (CA)n Simple_repeat Simple_repeat 1 76 0 189 306 45 67 chr11 86489328 86489456 -64294097 - MER5A DNA MER1_type -60 129 5 609 182 17 17 chr11 86489764 86489940 -64293613 + CT-rich Low_complexity Low_complexity 2 177 0 2065 131 0 13 chr11 86489941 86490288 -64293265 - AluSc SINE Alu 0 343 1 578 226 46 0 chr11 86490298 86490493 -64293060 - L1MA9 LINE L1 -38 6274 5998 330 87 0 0 chr11 86490592 86490638 -64292915 + (TC)n Simple_repeat Simple_repeat 2 47 0 308 374 43 0 chr11 86491083 86491222 -64292331 - MIR SINE MIR -70 192 48 324 158 0 0 chr11 86491347 86491404 -64292149 + (CA)n Simple_repeat Simple_repeat 2 58 0 256 328 80 8 chr11 86491442 86491567 -64291986 - MIR SINE MIR -56 152 19 302 296 141 0 chr11 86491671 86491813 -64291740 + MIR SINE MIR 101 262 0 231 282 16 52 chr11 86492389 86492490 -64291063 + MIR SINE MIR 7 105 -103 265 339 66 0 chr11 86492816 86492937 -64290616 - L2 LINE L2 -8 3264 3136 242 246 33 0 chr11 86493180 86493241 -64290312 - L2 LINE L2 0 3272 3210 224 343 0 0 chr11 86493962 86494032 -64289521 + (CCCA)n Simple_repeat Simple_repeat 3 72 0 205 345 73 26 chr11 86494177 86494368 -64289185 - L2 LINE L2 -201 3071 2872 184 143 0 102 chr11 86494588 86494637 -64288916 - L2 LINE L2 -1 3312 3269 193 234 0 21 chr11 86494911 86494958 -64288595 - L2 LINE L2 -70 3243 3198 213 267 120 0 chr11 86495013 86495088 -64288465 + L2 LINE L2 3198 3281 -32 266 313 118 14 chr11 86495546 86495690 -64287863 + MIR SINE MIR 104 262 0 439 338 13 7 chr11 86495737 86495888 -64287665 + MIR3 SINE MIR 17 168 -40 373 331 50 0 chr11 86496012 86496172 -64287381 - MER91A DNA MER1_type -28 168 1 230 317 16 71 chr11 86496401 86496584 -64286969 + L2 LINE L2 2892 3064 -208 210 184 0 0 chr11 86496654 86496692 -64286861 - MIR SINE MIR -62 146 109 823 181 16 28 chr11 86496827 86497009 -64286544 + MER5A DNA MER1_type 1 180 -9 550 246 14 93 chr11 86497147 86497306 -64286247 + L2 LINE L2 3033 3160 -153 1609 209 13 29 chr11 86497306 86497683 -64285870 - MLT1A2 LTR MaLR 0 374 4 550 246 14 93 chr11 86497683 86497812 -64285741 + L2 LINE L2 3160 3298 -15 186 43 0 0 chr11 86498204 86498227 -64285326 + (T)n Simple_repeat Simple_repeat 1 23 0 182 252 122 20 chr11 86498589 86498736 -64284817 + L2 LINE L2 3026 3187 -126 215 359 38 9 chr11 86498851 86498957 -64284596 - MIR SINE MIR -58 204 96 659 303 54 8 chr11 86499016 86499264 -64284289 + MIR SINE MIR 5 257 -5 416 257 7 15 chr11 86499393 86499529 -64284024 - MIR3 SINE MIR -61 147 13 463 323 36 27 chr11 86500118 86500338 -64283215 - MIR SINE MIR -18 244 23 321 256 60 8 chr11 86501314 86501431 -64282122 - MIR SINE MIR -80 182 60 21 0 0 0 chr11 86501806 86501827 -64281726 + AT_rich Low_complexity Low_complexity 1 21 0 460 332 30 5 chr11 86502115 86502347 -64281206 - MIR SINE MIR -13 249 15 242 94 0 0 chr11 86502715 86502747 -64280806 - L1P LINE L1 -783 5385 5354 * 5690 93 8 10 chr11 86502746 86503545 -64280008 + L1PA13 LINE L1 5363 6159 -4 186 244 64 13 chr11 86503579 86503657 -64279896 - L2 LINE L2 -265 3007 2926 406 239 99 35 chr11 86504296 86504438 -64279115 - MER103 DNA DNA 0 166 16 239 327 36 0 chr11 86504549 86504659 -64278894 - MIR SINE MIR -82 180 67 208 292 0 0 chr11 86504761 86504809 -64278744 + (CA)n Simple_repeat Simple_repeat 1 48 0 323 382 48 5 chr11 86504913 86505099 -64278454 - MIR SINE MIR -48 214 21 282 321 36 21 chr11 86505523 86505663 -64277890 + MIR3 SINE MIR 20 161 -47 184 240 20 0 chr11 86506216 86506266 -64277287 + MIR3 SINE MIR 140 190 -18 278 340 131 0 chr11 86507066 86507257 -64276296 - MIR SINE MIR -10 252 37 250 243 207 18 chr11 86507272 86507383 -64276170 - MIR SINE MIR -98 164 33 287 259 130 15 chr11 86507683 86507814 -64275739 + MIR3 SINE MIR 59 204 -4 1635 182 14 61 chr11 86508150 86508512 -64275041 + MLT2C1 LTR ERVL 5 349 -48 1914 170 0 3 chr11 86508512 86508818 -64274735 + AluJo SINE Alu 1 305 -7 2495 58 3 13 chr11 86508936 86509245 -64274308 - AluY SINE Alu -5 306 1 363 91 36 0 chr11 86509250 86509305 -64274248 + MLT2C1 LTR ERVL 464 520 0 246 291 36 97 chr11 86509418 86509614 -64273939 + MIR SINE MIR 29 212 -50 192 158 0 0 chr11 86509668 86509706 -64273847 + CT-rich Low_complexity Low_complexity 3 40 0 215 314 95 48 chr11 86509900 86510110 -64273443 + L2 LINE L2 3006 3225 -88 22 35 0 0 chr11 86510200 86510229 -64273324 + AT_rich Low_complexity Low_complexity 1 29 0 241 282 128 8 chr11 86510264 86510381 -64273172 - MIR SINE MIR -67 141 22 247 169 63 61 chr11 86510766 86510856 -64272697 - MIR SINE MIR -67 141 49 245 318 142 34 chr11 86511500 86511733 -64271820 - L2 LINE L2 -557 2757 2500 488 242 60 28 chr11 86511765 86511947 -64271606 + MIR SINE MIR 21 208 -54 288 280 91 51 chr11 86512035 86512210 -64271343 + MIR SINE MIR 62 243 -19 502 260 101 93 chr11 86512326 86512734 -64270819 + MLT1J LTR MaLR 99 509 -2 25 0 0 0 chr11 86513139 86513164 -64270389 + AT_rich Low_complexity Low_complexity 1 25 0 293 331 62 0 chr11 86513287 86513417 -64270136 + MIR SINE MIR 123 260 -2 447 315 107 19 chr11 86513928 86514144 -64269409 + MIR SINE MIR 17 251 -11 1936 146 14 3 chr11 86514282 86514569 -64268984 - AluJo SINE Alu -22 290 1 572 310 35 13 chr11 86514902 86515128 -64268425 - MIR SINE MIR -7 255 25 267 307 100 7 chr11 86515465 86515615 -64267938 + MIR SINE MIR 7 170 -92 213 217 0 33 chr11 86516474 86516566 -64266987 + CT-rich Low_complexity Low_complexity 4 92 0 356 309 51 17 chr11 86516728 86516903 -64266650 + L2 LINE L2 2299 2479 -835 1699 189 0 3 chr11 86516937 86517243 -64266310 - AluSx SINE Alu 0 305 1 287 291 48 0 chr11 86518723 86518826 -64264727 - MIR SINE MIR -107 155 48 222 241 17 17 chr11 86518894 86518952 -64264601 + CT-rich Low_complexity Low_complexity 3 60 0 423 244 317 0 chr11 86518982 86519146 -64264407 + LTR33 LTR ERVL 1 216 -305 629 183 69 8 chr11 86519211 86519342 -64264211 - Charlie1 DNA MER1_type 0 2761 2623 * 1099 203 10 5 chr11 86519339 86519541 -64264012 - Charlie1 DNA MER1_type -2535 226 24 384 239 46 23 chr11 86519567 86519697 -64263856 + LTR33 LTR ERVL 383 515 -6 991 152 0 96 chr11 86519825 86520022 -64263531 - MER2 DNA MER2_type -167 178 1 255 307 157 0 chr11 86520121 86520261 -64263292 + L3 LINE CR1 1097 1258 -319 2338 84 0 31 chr11 86520275 86520596 -64262957 - AluSq SINE Alu 0 313 3 23 78 0 0 chr11 86521511 86521562 -64261991 + AT_rich Low_complexity Low_complexity 1 51 0 1822 133 97 31 chr11 86521732 86522084 -64261469 + THE1C LTR MaLR 1 375 0 412 275 195 39 chr11 86522231 86522744 -64260809 - L1ME3 LINE L1 -281 5881 5289 250 274 9 100 chr11 86522897 86523127 -64260426 + MLT1J LTR MaLR 110 318 -193 266 336 22 29 chr11 86523619 86523756 -64259797 + L2 LINE L2 3137 3272 0 340 298 99 7 chr11 86524042 86524183 -64259370 - MIR SINE MIR -8 254 101 443 330 46 14 chr11 86525080 86525298 -64258255 + MIR SINE MIR 14 238 -24 670 196 125 5 chr11 86525400 86525584 -64257969 + MIR SINE MIR 31 236 -26 227 103 26 0 chr11 86526831 86526870 -64256683 + GA-rich Low_complexity Low_complexity 1 40 0 446 319 63 13 chr11 86526968 86527206 -64256347 - Tigger8 DNA MER2_type -25 641 392 295 252 43 78 chr11 86527807 86527922 -64255631 + MIR SINE MIR 72 182 -80 476 250 86 0 chr11 86527968 86528096 -64255457 + MER20 DNA MER1_type 81 219 0 327 302 133 18 chr11 86528228 86528399 -64255154 - MIR SINE MIR -50 212 27 276 100 0 0 chr11 86529092 86529132 -64254421 + (CTCA)n Simple_repeat Simple_repeat 4 43 0 21 0 0 0 chr11 86530175 86530196 -64253357 + AT_rich Low_complexity Low_complexity 1 21 0 254 304 130 10 chr11 86530523 86530708 -64252845 - MIR SINE MIR -14 248 37 248 352 23 16 chr11 86530923 86531051 -64252502 + MIR3 SINE MIR 64 192 -16 344 285 87 92 chr11 86531128 86531208 -64252345 + HAL1b LINE L1 703 782 -566 918 151 22 16 chr11 86531208 86531393 -64252160 + MER53 DNA DNA 4 189 0 344 285 87 92 chr11 86531393 86531519 -64252034 + HAL1b LINE L1 782 908 -440 282 143 0 0 chr11 86532484 86532533 -64251020 + (TG)n Simple_repeat Simple_repeat 1 49 0 2197 163 70 2 chr11 86532900 86533299 -64250254 - MSTB LTR MaLR 0 426 1 452 269 140 32 chr11 86533658 86533844 -64249709 - MIR SINE MIR -52 210 5 2166 126 0 0 chr11 86533967 86534261 -64249292 - AluSg SINE Alu -16 294 1 492 234 0 0 chr11 86535046 86535213 -64248340 + (TA)n Simple_repeat Simple_repeat 2 168 0 440 296 0 0 chr11 86535273 86535388 -64248165 - L2 LINE L2 -1 3312 3198 323 206 242 6 chr11 86535638 86535803 -64247750 + L1ME4a LINE L1 5835 6038 -83 198 285 240 64 chr11 86536293 86536560 -64246993 + L2 LINE L2 2998 3311 -2 237 206 256 18 chr11 86536587 86536810 -64246743 + L1ME4a LINE L1 5835 6110 -11 424 299 16 8 chr11 86537445 86537572 -64245981 - L2 LINE L2 -1 3312 3185 1772 264 58 47 chr11 86537995 86538478 -64245075 + L1ME LINE L1 30 527 -5543 1767 162 12 93 chr11 86538478 86538910 -64244643 + MLT2C1 LTR ERVL 1 397 0 1772 264 58 47 chr11 86538910 86539244 -64244309 + L1ME LINE L1 527 856 -5214 * 16301 199 20 23 chr11 86539238 86540678 -64242875 + L1PA13 LINE L1 1077 2520 -4292 1739 198 3 10 chr11 86540678 86540992 -64242561 - AluSx SINE Alu 0 312 1 16301 199 20 23 chr11 86540992 86544602 -64238951 + L1PA13 LINE L1 2520 6107 -705 243 29 88 0 chr11 86544601 86544635 -64238918 - L1P4 LINE L1 -693 5481 5445 * 69 41 0 0 chr11 86544647 86544744 -64238809 + AT_rich Low_complexity Low_complexity 1 97 0 4068 130 46 0 chr11 86544745 86545414 -64238139 + L1PA13 LINE L1 6096 6795 -19 637 167 0 14 chr11 86545424 86545562 -64237991 + L1MB7 LINE L1 6049 6184 0 1264 262 101 58 chr11 86545640 86546283 -64237270 + L1ME LINE L1 825 1439 -4641 901 217 0 0 chr11 86546283 86546440 -64237113 + FRAM SINE Alu 1 157 -9 1264 262 101 58 chr11 86546440 86547204 -64236349 + L1ME LINE L1 1439 2268 -3812 692 197 51 17 chr11 86547233 86547411 -64236142 + LTR41 LTR ERVL 4 187 -586 532 253 23 69 chr11 86547664 86547925 -64235628 + LTR41 LTR ERVL 510 758 -15 21 57 0 0 chr11 86547960 86547995 -64235558 + AT_rich Low_complexity Low_complexity 1 35 0 553 197 0 16 chr11 86548005 86548127 -64235426 + FRAM SINE Alu 57 176 0 2945 257 113 41 chr11 86548203 86549203 -64234350 + L1ME LINE L1 2426 3353 -2727 1968 95 3 61 chr11 86549203 86549526 -64234027 + AluSc SINE Alu 1 306 0 2945 257 113 41 chr11 86549526 86550487 -64233066 + L1ME LINE L1 3353 4528 -1552 10120 192 20 23 chr11 86550726 86553874 -64229679 - L1PA15 LINE L1 -2 6814 3673 732 248 77 15 chr11 86553874 86554148 -64229405 + L1ME LINE L1 4559 4849 -1231 3156 185 27 14 chr11 86554149 86554851 -64228702 - L1MB3 LINE L1 -8 6175 5465 227 268 107 9 chr11 86556356 86556468 -64227085 + MER94 DNA DNA 10 132 -2 406 249 30 106 chr11 86556777 86557014 -64226539 + HsTC2 DNA Tc2 4 222 -1676 407 295 72 62 chr11 86557118 86557408 -64226145 + HsTC2 DNA Tc2 500 796 -1102 2498 71 3 0 chr11 86557408 86557716 -64225837 + AluY SINE Alu 1 309 -2 407 295 72 62 chr11 86557716 86557812 -64225741 + HsTC2 DNA Tc2 796 890 -1008 23 0 0 0 chr11 86558332 86558355 -64225198 + AT_rich Low_complexity Low_complexity 1 23 0 312 335 85 77 chr11 86560779 86561325 -64222228 + L2 LINE L2 2698 3264 -8 2784 176 21 8 chr11 86561641 86562254 -64221299 + L1 LINE L1 4346 4966 -1180 6856 130 24 49 chr11 86562254 86562865 -64220688 + L1M1 LINE L1 2486 3111 -4454 2367 108 20 8 chr11 86562865 86563216 -64220337 + THE1A LTR MaLR 1 355 0 6856 130 24 49 chr11 86563216 86563906 -64219647 + L1M1 LINE L1 3111 3751 -3814 2042 139 0 0 chr11 86563906 86564200 -64219353 - AluSg SINE Alu -16 294 1 6856 130 24 49 chr11 86564200 86564698 -64218855 + L1M1 LINE L1 3751 4260 -3305 240 327 222 23 chr11 86564707 86564964 -64218589 - L3 LINE CR1 -6 1571 1264 5177 120 28 8 chr11 86564987 86565846 -64217707 - L1PA13 LINE L1 -22 6141 5266 6859 215 67 15 chr11 86565851 86567416 -64216137 - L1PA15 LINE L1 -5140 1647 1 251 351 123 6 chr11 86567442 86567637 -64215916 - L3 LINE CR1 -344 1233 981 207 388 31 0 chr11 86569141 86569239 -64214314 - L2 LINE L2 -6 3307 3207 261 0 0 0 chr11 86569572 86569601 -64213952 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 253 267 113 46 chr11 86569702 86569897 -64213656 + MLT1K LTR MaLR 379 586 -2 268 283 88 10 chr11 86570386 86570531 -64213022 + MIR SINE MIR 72 230 -32 1817 132 71 0 chr11 86571065 86571359 -64212194 - AluSx SINE Alu 0 313 1 272 385 0 62 chr11 86571365 86571526 -64212027 + L2 LINE L2 3094 3244 -28 257 208 0 0 chr11 86571529 86571582 -64211971 + GA-rich Low_complexity Low_complexity 4 56 0 265 310 97 56 chr11 86572181 86572639 -64210914 - L2 LINE L2 -179 3093 2522 360 223 135 40 chr11 86573293 86573441 -64210112 + L2 LINE L2 3152 3313 0 202 194 0 0 chr11 86573643 86573679 -64209874 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 23 0 0 0 chr11 86573802 86573825 -64209728 + AT_rich Low_complexity Low_complexity 1 23 0 1851 147 24 0 chr11 86573900 86574192 -64209361 - AluSx SINE Alu -13 299 1 212 196 65 0 chr11 86574243 86574289 -64209264 + MIR SINE MIR 122 170 -92 309 345 110 14 chr11 86575158 86575367 -64208186 - MIR SINE MIR -21 241 13 21 0 0 0 chr11 86576678 86576699 -64206854 + AT_rich Low_complexity Low_complexity 1 21 0 816 258 115 5 chr11 86576917 86577126 -64206427 + MIR SINE MIR 31 262 0 434 308 99 68 chr11 86577251 86577693 -64205860 - L2 LINE L2 0 3272 2817 190 330 46 47 chr11 86577901 86578130 -64205423 + L2 LINE L2 2827 3054 -218 314 238 36 36 chr11 86578154 86578238 -64205315 + L2 LINE L2 3221 3304 -9 187 333 27 0 chr11 86578422 86578497 -64205056 + L2 LINE L2 2710 2786 -528 191 385 128 0 chr11 86578539 86578648 -64204905 + L2 LINE L2 3133 3255 -17 229 187 0 165 chr11 86579218 86579309 -64204244 - MIR SINE MIR -3 259 184 235 281 0 0 chr11 86579339 86579396 -64204157 + MIR SINE MIR 206 262 0 222 286 137 75 chr11 86579397 86579558 -64203995 - MIR SINE MIR -67 195 25 195 220 0 60 chr11 86579933 86579983 -64203570 - MIR SINE MIR -96 166 120 1774 158 153 5 chr11 86580010 86580383 -64203170 + MSTA LTR MaLR 1 428 0 378 318 88 7 chr11 86580536 86580684 -64202869 + MIR3 SINE MIR 24 183 -25 253 348 6 73 chr11 86581433 86581597 -64201956 + L3 LINE CR1 949 1101 -476 242 354 62 12 chr11 86582152 86582313 -64201240 + L2 LINE L2 2578 2746 -568 1595 176 14 28 chr11 86582456 86582746 -64200807 - AluJb SINE Alu -13 299 14 335 296 0 0 chr11 86582762 86582887 -64200666 + T-rich Low_complexity Low_complexity 1 125 0 1845 195 95 10 chr11 86583195 86583677 -64199876 + Charlie1b DNA MER1_type 1 523 0 186 311 0 0 chr11 86583802 86583847 -64199706 - L2 LINE L2 -16 3256 3212 194 323 15 15 chr11 86585184 86585249 -64198304 + MIR SINE MIR 30 94 -114 376 273 128 62 chr11 86585282 86585344 -64198209 - MIR SINE MIR -16 246 190 959 237 9 9 chr11 86585344 86585563 -64197990 + MER20 DNA MER1_type 1 219 0 376 273 128 62 chr11 86585563 86585727 -64197826 - MIR SINE MIR -72 190 5 2001 254 130 44 chr11 86587453 86588195 -64195358 + L1MEc LINE L1 45 722 -5493 260 27 27 0 chr11 86588195 86588232 -64195321 + (TA)n Simple_repeat Simple_repeat 2 39 0 2001 254 130 44 chr11 86588232 86590306 -64193247 + L1MEc LINE L1 722 3045 -3170 1126 187 13 8 chr11 86590308 86590543 -64193010 - L1MA4A LINE L1 -1793 4353 4118 5295 157 33 22 chr11 86590549 86590993 -64192560 + L1MA4A LINE L1 4360 4798 -1505 1571 163 82 31 chr11 86590993 86591348 -64192205 + THE1C LTR MaLR 3 375 0 5295 157 33 22 chr11 86591348 86592826 -64190727 + L1MA4A LINE L1 4798 6291 -12 352 178 159 19 chr11 86592810 86592917 -64190636 + L1MEc LINE L1 3018 3139 -3076 * 349 218 15 180 chr11 86593080 86593286 -64190267 - MIR SINE MIR -13 249 78 205 250 0 0 chr11 86593291 86593335 -64190218 - MIR SINE MIR -8 254 211 * 273 306 94 0 chr11 86593331 86593416 -64190137 - MIR SINE MIR -168 94 2 559 252 0 16 chr11 86593641 86593764 -64189789 - FLAM_A SINE Alu -12 121 1 987 341 35 32 chr11 86593778 86594319 -64189234 + L2 LINE L2 2521 3066 -206 * 1305 299 97 75 chr11 86594298 86594959 -64188594 + L2 LINE L2 1827 2472 -841 203 0 0 36 chr11 86594959 86594987 -64188566 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1305 299 97 75 chr11 86594987 86595770 -64187783 + L2 LINE L2 2472 3310 -3 215 304 163 64 chr11 86596222 86596597 -64186956 - L2 LINE L2 -25 3247 2836 231 216 39 0 chr11 86596925 86596976 -64186577 + (CATA)n Simple_repeat Simple_repeat 3 55 0 827 251 17 14 chr11 86596996 86597283 -64186270 + L1ME2 LINE L1 5698 5985 -179 195 344 16 0 chr11 86597300 86597361 -64186192 - MIR SINE MIR -74 188 127 233 288 0 17 chr11 86597615 86597674 -64185879 - MER5A DNA MER1_type -2 187 130 * 300 236 83 14 chr11 86597672 86597744 -64185809 + MER5A DNA MER1_type 113 189 0 205 312 78 13 chr11 86597746 86597823 -64185730 + MER5B DNA MER1_type 82 163 -15 686 323 13 10 chr11 86598266 86598526 -64185027 + MIR SINE MIR 3 262 0 271 311 46 46 chr11 86599352 86599548 -64184005 + L2 LINE L2 2626 2821 -493 196 377 47 67 chr11 86599599 86599896 -64183657 + L2 LINE L2 2891 3181 -91 486 329 41 11 chr11 86600477 86600696 -64182857 - MIR SINE MIR -5 257 34 475 336 91 42 chr11 86601079 86601484 -64182069 + L3 LINE CR1 1138 1562 -15 234 349 93 0 chr11 86602301 86602430 -64181123 - L2 LINE L2 0 3272 3132 476 275 204 2 chr11 86602952 86603269 -64180284 + L1MC4a LINE L1 5467 5593 -528 252 0 0 0 chr11 86603491 86603519 -64180034 + (T)n Simple_repeat Simple_repeat 1 28 0 2360 55 23 10 chr11 86603651 86603958 -64179595 - AluY SINE Alu 0 311 1 35 24 0 0 chr11 86604269 86604311 -64179242 + AT_rich Low_complexity Low_complexity 1 42 0 34 24 0 0 chr11 86604328 86604369 -64179184 + AT_rich Low_complexity Low_complexity 1 41 0 227 203 0 0 chr11 86604545 86604609 -64178944 + L1M4b LINE L1 1608 1671 -5188 363 234 65 19 chr11 86604625 86604732 -64178821 + L1M4b LINE L1 1796 1907 -5040 1196 245 75 17 chr11 86604773 86605132 -64178421 + MLT1J1 LTR MaLR 5 384 -62 225 320 52 52 chr11 86605177 86605330 -64178223 - L3 LINE CR1 -57 1520 1368 294 310 88 9 chr11 86605467 86605580 -64177973 + MIR3 SINE MIR 66 187 -21 225 82 61 0 chr11 86605635 86605684 -64177869 + (TATAA)n Simple_repeat Simple_repeat 4 55 0 463 272 0 26 chr11 86605859 86605973 -64177580 - L3 LINE CR1 -73 1504 1394 359 269 39 51 chr11 86606641 86606797 -64176756 - MIR SINE MIR -49 213 60 634 251 153 0 chr11 86607142 86607325 -64176228 - MIR SINE MIR -21 241 31 428 202 40 0 chr11 86607327 86607426 -64176127 + MLT1J LTR MaLR 319 421 -90 451 299 45 17 chr11 86607526 86607703 -64175850 + MIR3 SINE MIR 20 201 -7 1821 157 137 34 chr11 86608170 86608558 -64174995 + MSTA LTR MaLR 1 428 0 2561 109 43 0 chr11 86608560 86608954 -64174599 + MSTA-int LTR MaLR 3 413 -1167 261 0 0 0 chr11 86608954 86608983 -64174570 + (T)n Simple_repeat Simple_repeat 1 29 0 38 39 0 0 chr11 86608996 86609048 -64174505 + GC_rich Low_complexity Low_complexity 1 52 0 2042 155 0 19 chr11 86609194 86609504 -64174049 - AluSx SINE Alu 0 312 9 6595 158 6 12 chr11 86609577 86610738 -64172815 + MSTA-int LTR MaLR 427 1580 0 1483 130 172 105 chr11 86610738 86611139 -64172414 + MSTA LTR MaLR 1 428 0 327 235 121 114 chr11 86611448 86611466 -64172087 - MIR3 SINE MIR -38 170 154 736 224 29 0 chr11 86611466 86611636 -64171917 + MER5B DNA MER1_type 1 175 -3 327 235 121 114 chr11 86611636 86611766 -64171787 - MIR3 SINE MIR -54 154 21 182 276 11 69 chr11 86612042 86612129 -64171424 - MIR SINE MIR -3 259 178 361 227 0 0 chr11 86612487 86612562 -64170991 - MIR SINE MIR -121 141 67 2402 92 3 0 chr11 86613482 86613785 -64169768 - AluSp SINE Alu -9 304 1 1564 194 7 23 chr11 86613871 86614181 -64169372 - AluJo SINE Alu -7 305 1 264 341 22 36 chr11 86614402 86614540 -64169013 + MIR SINE MIR 70 205 -57 1119 282 83 27 chr11 86615670 86616113 -64167440 + MER115 DNA AcHobo 222 689 -4 241 300 0 0 chr11 86616116 86616176 -64167377 + L2 LINE L2 3251 3310 -3 1986 117 7 4 chr11 86616299 86616624 -64166929 + AluSp SINE Alu 1 326 0 239 285 219 8 chr11 86617053 86617176 -64166377 + MIR3 SINE MIR 3 151 -57 272 246 0 0 chr11 86617508 86617565 -64165988 + MER3 DNA MER1_type 1 57 -152 443 246 209 16 chr11 86617890 86618081 -64165472 - MIR SINE MIR 0 262 35 291 212 179 62 chr11 86618157 86618336 -64165217 + L2 LINE L2 3114 3313 0 194 360 140 7 chr11 86618404 86618554 -64164999 + L2 LINE L2 3102 3271 -1 251 215 215 13 chr11 86619171 86619250 -64164303 + L2 LINE L2 3134 3228 -44 188 176 0 0 chr11 86619446 86619480 -64164073 + L2 LINE L2 3209 3242 -30 225 236 135 34 chr11 86619683 86619772 -64163781 + MER5A DNA MER1_type 16 113 -76 * 258 241 51 51 chr11 86619697 86619776 -64163777 - MER5A DNA MER1_type -28 161 83 222 333 21 0 chr11 86621324 86621420 -64162133 + (CCTAT)n Simple_repeat Simple_repeat 3 100 0 180 0 0 0 chr11 86621869 86621889 -64161664 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 198 306 224 0 chr11 86622182 86622316 -64161237 - MIR SINE MIR 0 262 99 220 310 81 0 chr11 86622389 86622476 -64161077 - MIR SINE MIR -166 96 3 238 338 7 35 chr11 86622673 86622815 -64160738 - L3 LINE CR1 -345 1232 1095 33 0 0 0 chr11 86622884 86622917 -64160636 + AT_rich Low_complexity Low_complexity 1 33 0 351 316 122 32 chr11 86623822 86624069 -64159484 - L2 LINE L2 -493 2821 2553 3489 236 53 34 chr11 86624464 86625728 -64157825 + L1ME1 LINE L1 3980 5302 -864 1990 125 6 55 chr11 86625728 86626056 -64157497 + AluSq SINE Alu 1 312 -1 3489 236 53 34 chr11 86626056 86626930 -64156623 + L1ME1 LINE L1 5302 6159 -7 2184 133 10 0 chr11 86627021 86627321 -64156232 - AluSg SINE Alu -7 303 1 444 291 91 20 chr11 86627856 86628055 -64155498 - MIR SINE MIR -44 218 6 186 43 0 0 chr11 86628309 86628332 -64155221 + (A)n Simple_repeat Simple_repeat 1 23 0 198 0 0 0 chr11 86628489 86628511 -64155042 + (TA)n Simple_repeat Simple_repeat 1 22 0 10397 35 4 1 chr11 86628511 86630520 -64153033 - L1PA5 LINE L1 -18 6136 4121 17191 49 10 0 chr11 86630520 86632818 -64150735 + L1PA5 LINE L1 1806 4126 -2020 600 144 0 36 chr11 86632954 86633093 -64150460 + (GAAA)n Simple_repeat Simple_repeat 3 136 0 684 241 30 35 chr11 86633229 86633432 -64150121 - MIR SINE MIR -5 257 56 255 192 0 39 chr11 86633799 86633851 -64149702 - L2 LINE L2 -7 3265 3216 404 317 10 0 chr11 86633962 86634066 -64149487 + MIR SINE MIR 43 147 -115 230 263 18 0 chr11 86634885 86634942 -64148611 - MIR SINE MIR -147 115 58 305 315 102 57 chr11 86636187 86636520 -64147033 + L2 LINE L2 2424 2771 -543 261 0 0 0 chr11 86636534 86636563 -64146990 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 348 328 0 0 chr11 86636627 86636749 -64146804 + Charlie8 DNA MER1_type 88 209 -2208 1895 214 84 7 chr11 86636938 86637401 -64146152 + MLT1D LTR MaLR 1 499 -6 868 348 35 6 chr11 86637789 86638131 -64145422 - MER115 DNA AcHobo -318 375 24 306 358 167 0 chr11 86638374 86638536 -64145017 - MIR SINE MIR -25 237 49 274 349 0 9 chr11 86638602 86638708 -64144845 - L2 LINE L2 -20 3293 3189 196 265 0 41 chr11 86639738 86639787 -64143766 - L2 LINE L2 -16 3256 3210 192 228 13 114 chr11 86639826 86639905 -64143648 - L2 LINE L2 -13 3300 3230 676 307 172 21 chr11 86640016 86640840 -64142713 + L2 LINE L2 2365 3312 -1 362 370 48 28 chr11 86641798 86641937 -64141616 - MIR SINE MIR -6 256 108 870 213 5 11 chr11 86641937 86642125 -64141428 - MER5A DNA MER1_type -2 187 1 362 370 48 28 chr11 86642125 86642234 -64141319 - MIR SINE MIR -154 108 3 1889 116 3 14 chr11 86642455 86642739 -64140814 - AluSg SINE Alu -27 283 3 2454 164 12 42 chr11 86643129 86643235 -64140318 + L1PB4 LINE L1 5683 5791 -365 270 0 0 0 chr11 86643235 86643265 -64140288 + (TCTCCC)n Simple_repeat Simple_repeat 2 31 0 4854 84 20 14 chr11 86643269 86644358 -64139195 + SVA Other Other 14 1386 0 2454 164 12 42 chr11 86644358 86644726 -64138827 + L1PB4 LINE L1 5794 6149 -7 222 214 0 0 chr11 86644746 86644802 -64138751 + (TA)n Simple_repeat Simple_repeat 2 57 0 2306 99 0 3 chr11 86644930 86645234 -64138319 - AluY SINE Alu -8 303 1 398 339 71 6 chr11 86645327 86645510 -64138043 + MIR SINE MIR 6 200 -62 2272 96 0 16 chr11 86645536 86645839 -64137714 + AluSg SINE Alu 1 298 -12 554 243 86 92 chr11 86646625 86646917 -64136636 - MER102a DNA MER1_type -3 327 38 607 293 95 36 chr11 86647170 86647392 -64136161 + MIR SINE MIR 18 252 -10 352 313 91 49 chr11 86647678 86647921 -64135632 - L3 LINE CR1 -30 1547 1295 304 329 97 26 chr11 86648499 86648747 -64134806 - L2 LINE L2 -16 3297 2992 625 359 23 15 chr11 86648747 86649006 -64134547 - MIR SINE MIR 0 262 2 2133 118 3 10 chr11 86649641 86649955 -64133598 + AluSx SINE Alu 1 312 0 645 306 70 18 chr11 86650049 86650370 -64133183 + MLT1J2 LTR MaLR 48 394 -56 1678 167 30 4 chr11 86650370 86650640 -64132913 + AluSx SINE Alu 34 310 -2 645 306 70 18 chr11 86650640 86650701 -64132852 + MLT1J2 LTR MaLR 394 450 0 285 283 101 38 chr11 86650909 86651068 -64132485 + MIR SINE MIR 24 192 -70 464 302 167 9 chr11 86651392 86651607 -64131946 + MIR SINE MIR 14 262 0 394 267 53 30 chr11 86652055 86652186 -64131367 + MIR3 SINE MIR 70 203 -5 296 247 82 0 chr11 86652292 86652377 -64131176 - L2 LINE L2 -54 3259 3168 191 275 0 0 chr11 86652536 86652576 -64130977 - L2 LINE L2 -95 3177 3138 28 0 0 0 chr11 86652734 86652762 -64130791 + AT_rich Low_complexity Low_complexity 1 28 0 238 264 75 0 chr11 86652779 86652832 -64130721 - L2 LINE L2 -30 3242 3186 359 290 38 0 chr11 86652887 86653013 -64130540 + MIR SINE MIR 27 155 -58 331 315 165 41 chr11 86653178 86653693 -64129860 + L2 LINE L2 2180 2758 -556 336 333 138 35 chr11 86653824 86654136 -64129417 + L2 LINE L2 2915 3258 -14 182 204 0 20 chr11 86654331 86654380 -64129173 + GA-rich Low_complexity Low_complexity 3 50 0 211 172 16 78 chr11 86655528 86655592 -64127961 + L3b LINE CR1 1331 1390 -193 247 371 71 14 chr11 86655768 86655908 -64127645 - L2 LINE L2 0 3272 3125 671 329 17 31 chr11 86656246 86656599 -64126954 + LTR16B LTR ERVL 117 464 0 267 341 106 10 chr11 86656605 86656907 -64126646 - L2 LINE L2 -526 2788 2458 1187 128 74 133 chr11 86657240 86657647 -64125906 - MLT1B LTR MaLR 0 390 8 1619 197 10 29 chr11 86659202 86659511 -64124042 - AluJo SINE Alu -9 303 1 252 295 66 49 chr11 86660305 86660427 -64123126 + MIR SINE MIR 82 205 -57 261 365 95 14 chr11 86660757 86660979 -64122574 + MIR SINE MIR 3 242 -20 252 328 46 15 chr11 86661442 86661573 -64121980 - MIR SINE MIR -56 206 72 448 323 80 66 chr11 86661697 86662300 -64121253 + MLT1L LTR MaLR 1 611 -4 288 326 61 15 chr11 86662302 86662434 -64121119 - MIR SINE MIR -88 174 37 407 321 16 47 chr11 86662535 86662725 -64120828 + MIR SINE MIR 20 203 -59 817 273 8 43 chr11 86663612 86663865 -64119688 - MIR SINE MIR -12 250 7 357 156 18 75 chr11 86664447 86664585 -64118968 - ORSL DNA AcHobo -8 267 84 412 121 79 6 chr11 86664595 86664760 -64118793 + (TA)n Simple_repeat Simple_repeat 2 178 0 284 253 0 13 chr11 86664760 86664835 -64118718 - ORSL DNA AcHobo -201 74 1 453 345 95 15 chr11 86665067 86665267 -64118286 - MIR SINE MIR -20 242 27 273 304 104 15 chr11 86665968 86666103 -64117450 - MIR SINE MIR -25 237 91 279 279 63 0 chr11 86666254 86666333 -64117220 + L2 LINE L2 3180 3263 -50 374 318 88 84 chr11 86666361 86666704 -64116849 - L2 LINE L2 -25 3247 2904 499 290 75 33 chr11 86666886 86667100 -64116453 - L2 LINE L2 -781 2533 2311 222 37 0 0 chr11 86667460 86667487 -64116066 + (TATG)n Simple_repeat Simple_repeat 1 27 0 960 217 10 30 chr11 86667489 86667692 -64115861 - AluJo SINE Alu -29 283 85 1071 39 0 0 chr11 86667804 86667933 -64115620 - L1PA6 LINE L1 -13 6141 6013 7634 135 25 22 chr11 86669164 86670460 -64113093 + HSMAR2 DNA Mariner 1 1301 -1 193 313 94 0 chr11 86671668 86671732 -64111821 - L2 LINE L2 -9 3263 3194 900 272 34 0 chr11 86672026 86672265 -64111288 + MIR SINE MIR 13 259 -3 502 404 56 13 chr11 86672404 86672798 -64110755 + L2 LINE L2 2434 2844 -470 519 299 188 25 chr11 86672862 86673176 -64110377 + L2 LINE L2 2949 3313 0 586 271 46 50 chr11 86673801 86674063 -64109490 + MIR SINE MIR 1 261 -1 209 267 0 0 chr11 86674195 86674240 -64109313 + CT-rich Low_complexity Low_complexity 1 45 0 565 324 83 89 chr11 86674302 86674917 -64108636 + L1MEd LINE L1 6 616 -5503 258 290 76 52 chr11 86674992 86675660 -64107893 + L1MEd LINE L1 811 1485 -4644 223 154 106 0 chr11 86676196 86676300 -64107253 + (TA)n Simple_repeat Simple_repeat 1 115 0 394 303 66 38 chr11 86676311 86677507 -64106046 + L1MEd LINE L1 2208 3469 -2660 402 289 52 0 chr11 86677707 86677804 -64105749 - L2 LINE L2 -27 3245 3144 346 109 250 0 chr11 86677863 86677927 -64105626 + MADE1 DNA Mariner 1 80 0 251 190 0 81 chr11 86678052 86678126 -64105427 - L1MD3 LINE L1 0 8042 7927 596 208 0 104 chr11 86679317 86679339 -64104214 + MER5B DNA MER1_type 2 25 -153 2260 128 50 8 chr11 86679339 86679699 -64103854 + THE1C LTR MaLR 1 375 0 596 208 0 104 chr11 86679699 86679745 -64103808 + MER5B DNA MER1_type 25 74 -104 2249 54 57 0 chr11 86679745 86680025 -64103528 + AluY SINE Alu 1 296 -15 596 208 0 104 chr11 86680025 86680099 -64103454 + MER5B DNA MER1_type 74 130 -48 415 299 153 0 chr11 86680204 86680361 -64103192 - MER5A DNA MER1_type 0 189 9 21 0 0 0 chr11 86680988 86681009 -64102544 + AT_rich Low_complexity Low_complexity 1 21 0 363 270 99 9 chr11 86681227 86681338 -64102215 + MIR SINE MIR 23 143 -119 376 347 42 21 chr11 86682472 86682665 -64100888 - MIR SINE MIR -18 244 48 297 89 0 0 chr11 86683784 86683829 -64099724 + (CA)n Simple_repeat Simple_repeat 1 45 0 1071 226 9 49 chr11 86684195 86684522 -64099031 + MLT2C1 LTR ERVL 1 314 -83 354 284 77 19 chr11 86684522 86684677 -64098876 + L3 LINE CR1 1413 1576 -1 322 250 106 8 chr11 86684802 86684934 -64098619 + L1MEd LINE L1 87 231 -5974 1207 257 60 43 chr11 86685098 86685514 -64098039 - L2 LINE L2 -1067 2247 1825 348 245 42 47 chr11 86685514 86685726 -64097827 + L1MC5 LINE L1 7366 7576 -385 4332 154 71 4 chr11 86685826 86686600 -64096953 + LTR1B LTR ERV1 1 826 0 303 381 52 0 chr11 86686805 86686960 -64096593 + L1MEd LINE L1 660 822 -5383 417 299 64 19 chr11 86687094 86687469 -64096084 + L1MEd LINE L1 1282 1673 -4723 247 318 48 36 chr11 86688143 86688583 -64094970 + L1MEd LINE L1 2545 2989 -3226 180 176 0 0 chr11 86688584 86688618 -64094935 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 1236 114 0 17 chr11 86688792 86688968 -64094585 + AluYa5 SINE Alu 139 311 0 342 297 97 22 chr11 86688970 86689239 -64094314 + L1MEd LINE L1 3099 3387 -2828 363 295 114 7 chr11 86690225 86690374 -64093179 - MIR SINE MIR -76 186 22 251 348 0 0 chr11 86691051 86691120 -64092433 + L2 LINE L2 3204 3272 0 2279 97 0 0 chr11 86691120 86691410 -64092143 + AluSg SINE Alu 2 291 -19 232 287 0 64 chr11 86692358 86692452 -64091101 - L2 LINE L2 -3 3310 3223 361 312 29 7 chr11 86692974 86693112 -64090441 - MIR SINE MIR -16 246 106 267 333 9 9 chr11 86693793 86693901 -64089652 - MIR SINE MIR -80 128 21 196 388 131 16 chr11 86694594 86694839 -64088714 + L2 LINE L2 2473 2745 -569 501 47 0 0 chr11 86695150 86695214 -64088339 + (TG)n Simple_repeat Simple_repeat 2 65 0 1934 103 11 4 chr11 86695242 86695503 -64088050 - AluY SINE Alu -10 301 39 318 232 120 24 chr11 86695542 86695667 -64087886 - MIR SINE MIR -13 249 113 302 221 189 0 chr11 86695684 86695806 -64087747 + L1ME4a LINE L1 5961 6105 -16 235 228 0 18 chr11 86695831 86695888 -64087665 + MIR SINE MIR 176 231 -31 434 332 105 13 chr11 86696131 86696369 -64087184 - MIR SINE MIR -1 261 2 297 266 202 0 chr11 86696507 86696601 -64086952 - MIR SINE MIR -122 140 28 739 282 139 23 chr11 86697995 86698279 -64085274 - L2 LINE L2 -814 2500 2148 198 0 0 0 chr11 86698279 86698301 -64085252 + (ATGTG)n Simple_repeat Simple_repeat 3 24 0 739 282 139 23 chr11 86698301 86698448 -64085105 - L2 LINE L2 -1166 2148 2019 405 306 98 11 chr11 86698481 86698664 -64084889 - MIR SINE MIR -27 235 37 496 308 57 15 chr11 86698748 86698962 -64084591 - MIR SINE MIR -37 225 6 270 298 9 61 chr11 86699480 86699594 -64083959 - MIR SINE MIR -110 152 45 234 0 0 0 chr11 86699625 86699651 -64083902 + (T)n Simple_repeat Simple_repeat 1 26 0 368 289 40 27 chr11 86699948 86700246 -64083307 + AluSx SINE Alu 1 302 0 282 29 0 0 chr11 86700422 86700457 -64083096 + (T)n Simple_repeat Simple_repeat 1 35 0 260 257 283 0 chr11 86700573 86700686 -64082867 - MER5A DNA MER1_type 0 189 45 198 0 0 0 chr11 86700699 86700721 -64082832 + (GA)n Simple_repeat Simple_repeat 2 23 0 2061 153 3 3 chr11 86700752 86701059 -64082494 + AluSx SINE Alu 1 307 -5 275 255 176 28 chr11 86701908 86702000 -64081553 - MER113 DNA MER1_type? -133 388 311 228 35 0 0 chr11 86702000 86702029 -64081524 + (TA)n Simple_repeat Simple_repeat 1 29 0 275 255 176 28 chr11 86702029 86702152 -64081401 - MER113 DNA MER1_type? -210 311 141 6866 223 13 11 chr11 86702267 86703555 -64079998 + L1PA15 LINE L1 2286 3582 -2564 2749 124 24 2 chr11 86703555 86703974 -64079579 + MSTA LTR MaLR 1 428 0 6866 223 13 11 chr11 86703974 86704480 -64079073 + L1PA15 LINE L1 3582 4085 -2061 29895 112 10 55 chr11 86704487 86710919 -64072634 + L1PA7 LINE L1 12 6146 -8 6102 199 14 2 chr11 86710922 86713006 -64070547 + L1PA15 LINE L1 4067 6161 -4 969 213 61 34 chr11 86713118 86713381 -64070172 - MER21B LTR ERV1 -51 812 543 849 253 98 79 chr11 86713369 86713737 -64069816 - MER21B LTR ERV1 -477 386 12 * 10366 124 20 29 chr11 86713811 86714014 -64069539 - Tigger1 DNA MER2_type -1 2417 2214 1180 75 0 0 chr11 86714014 86714173 -64069380 + L1MA4 LINE L1 6130 6288 -12 10366 124 20 29 chr11 86714173 86714247 -64069306 - Tigger1 DNA MER2_type -204 2214 2141 2135 116 17 3 chr11 86714247 86714548 -64069005 - AluSg SINE Alu -5 305 1 10366 124 20 29 chr11 86714548 86716051 -64067502 - Tigger1 DNA MER2_type -277 2141 652 924 175 34 5 chr11 86716028 86716234 -64067319 - Tigger1 DNA MER2_type -2206 212 1 * 7190 25 0 0 chr11 86716310 86717189 -64066364 - L1PA3 LINE L1 -1 6154 5276 182 337 33 0 chr11 86717189 86717281 -64066272 + MIR SINE MIR 92 186 -76 389 332 100 23 chr11 86717308 86717528 -64066025 + MIR SINE MIR 20 256 -6 650 281 41 49 chr11 86718085 86718331 -64065222 + MIR SINE MIR 7 250 -12 497 253 23 63 chr11 86718538 86718712 -64064841 - MIR3 SINE MIR -21 187 21 299 313 52 80 chr11 86719176 86719425 -64064128 - L2 LINE L2 0 3272 3031 240 307 34 23 chr11 86719566 86719654 -64063899 + MIR SINE MIR 46 134 -128 183 326 67 34 chr11 86719723 86719812 -64063741 + L2 LINE L2 3151 3242 -30 269 273 0 0 chr11 86720510 86720576 -64062977 + (CAT)n Simple_repeat Simple_repeat 1 66 0 253 300 100 21 chr11 86720645 86720785 -64062768 + MIR SINE MIR 64 214 -48 789 276 32 20 chr11 86721152 86721402 -64062151 - MIR SINE MIR -3 259 7 415 297 123 0 chr11 86721527 86721665 -64061888 + MER91B DNA MER1_type 31 185 -5 369 75 0 0 chr11 86721931 86721983 -64061570 + (TG)n Simple_repeat Simple_repeat 1 105 0 369 75 0 0 chr11 86721983 86722036 -64061517 + (TG)n Simple_repeat Simple_repeat 2 54 0 203 281 31 0 chr11 86722530 86722594 -64060959 - MIR SINE MIR -113 149 84 666 276 33 6 chr11 86724764 86724945 -64058608 - MIR SINE MIR -76 186 1 1171 198 5 0 chr11 86725019 86725236 -64058317 + MER20 DNA MER1_type 1 218 -1 256 215 46 15 chr11 86725298 86725363 -64058190 + L2 LINE L2 3205 3271 -1 190 333 151 0 chr11 86726077 86726170 -64057383 - MIR3 SINE MIR -12 196 90 425 275 77 28 chr11 86726549 86726731 -64056822 + MIR SINE MIR 2 192 -70 488 268 62 25 chr11 86727039 86727205 -64056348 - MIR SINE MIR -62 146 17 186 43 0 0 chr11 86727620 86727643 -64055910 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 264 299 0 0 chr11 86728034 86728111 -64055442 + MIR SINE MIR 73 149 -113 292 270 117 18 chr11 86729228 86729339 -64054214 + MIR SINE MIR 26 147 -115 1837 201 28 3 chr11 86729440 86729794 -64053759 + MLT1A1 LTR MaLR 3 365 0 265 282 176 8 chr11 86729936 86730067 -64053486 + MIR SINE MIR 107 259 -3 285 316 17 26 chr11 86730259 86730376 -64053177 - MIR SINE MIR -144 118 3 1095 226 15 0 chr11 86731371 86731636 -64051917 + MER58B DNA MER1_type 72 340 -1 232 310 29 63 chr11 86731654 86731828 -64051725 + L2 LINE L2 2622 2789 -525 263 250 0 0 chr11 86731858 86731922 -64051631 + Tigger7 DNA MER2_type 201 264 -2223 277 263 114 26 chr11 86731972 86732086 -64051467 + L2 LINE L2 2930 3053 -219 2068 151 5 46 chr11 86732454 86732844 -64050709 + THE1C LTR MaLR 1 374 -1 339 279 130 14 chr11 86733678 86733886 -64049667 + L1ME3 LINE L1 5634 5865 -256 192 354 15 0 chr11 86734266 86734331 -64049222 - L3b LINE CR1 -8 1575 1510 279 265 129 18 chr11 86734375 86734545 -64049008 + L1ME3 LINE L1 5954 6142 -20 50 65 0 0 chr11 86734693 86734785 -64048768 + AT_rich Low_complexity Low_complexity 1 92 0 1859 177 50 18 chr11 86734891 86735275 -64048278 - MSTD LTR MaLR 0 396 1 2618 257 125 47 chr11 86735275 86736632 -64046921 - MSTD-int LTR MaLR 0 1651 189 1291 213 35 78 chr11 86737279 86737312 -64046241 - MLT2D LTR ERVL -10 404 371 369 62 0 0 chr11 86737312 86737360 -64046193 + (CA)n Simple_repeat Simple_repeat 1 48 0 1291 213 35 78 chr11 86737360 86737748 -64045805 - MLT2D LTR ERVL -43 371 1 349 314 98 44 chr11 86738492 86738713 -64044840 - MIR SINE MIR -17 245 15 2036 51 94 11 chr11 86739000 86739276 -64044277 + AluY SINE Alu 1 299 -12 386 215 97 42 chr11 86739430 86739574 -64043979 - MIR SINE MIR -10 252 101 279 279 65 9 chr11 86739867 86739986 -64043567 - MIR SINE MIR -46 162 35 990 154 64 39 chr11 86740234 86740467 -64043086 - L1MA4 LINE L1 -742 5561 5323 * 3139 148 22 27 chr11 86740465 86741061 -64042492 + L1MA4 LINE L1 5548 6140 -160 2648 118 42 15 chr11 86741061 86741517 -64042036 + MER4D LTR ERV1 1 468 -435 1154 14 0 7 chr11 86741556 86741694 -64041859 - AluY SINE Alu 0 311 175 1850 57 0 4 chr11 86741696 86741926 -64041627 - AluY SINE Alu -82 229 1 1940 169 63 5 chr11 86741960 86742339 -64041214 + MER4D LTR ERV1 503 903 0 800 127 60 0 chr11 86742339 86742489 -64041064 + L1MA4 LINE L1 6137 6295 -5 29 0 0 0 chr11 86743261 86743290 -64040263 + AT_rich Low_complexity Low_complexity 1 29 0 252 300 130 0 chr11 86743379 86743479 -64040074 + L2 LINE L2 3160 3272 0 224 213 0 0 chr11 86743506 86743553 -64040000 + L2 LINE L2 3263 3309 -4 24 0 0 0 chr11 86743836 86743860 -64039693 + AT_rich Low_complexity Low_complexity 1 24 0 859 213 11 6 chr11 86744303 86744477 -64039076 - MER45A DNA AcHobo -3 175 1 556 293 32 27 chr11 86745575 86745763 -64037790 - MIR3 SINE MIR -9 199 11 656 197 28 0 chr11 86745763 86745905 -64037648 - MLT1A1 LTR MaLR 0 365 220 3866 146 32 4 chr11 86745918 86746603 -64036950 + MER50 LTR ERV1 1 704 -30 693 196 42 84 chr11 86746653 86746867 -64036686 - MLT1A1 LTR MaLR -160 205 1 310 304 54 0 chr11 86746999 86747091 -64036462 + MIR3 SINE MIR 82 178 -30 180 286 16 32 chr11 86747917 86747980 -64035573 + MIR SINE MIR 45 106 -102 538 247 68 20 chr11 86748100 86748357 -64035196 + MLT1G LTR MaLR 101 384 -211 21 57 0 0 chr11 86749048 86749083 -64034470 + AT_rich Low_complexity Low_complexity 1 35 0 628 339 23 9 chr11 86749130 86749351 -64034202 - MIR SINE MIR -8 254 31 200 255 85 0 chr11 86749416 86749463 -64034090 + L2 LINE L2 3222 3272 0 197 321 52 75 chr11 86749947 86750081 -64033472 - MIR3 SINE MIR -69 139 9 493 330 112 10 chr11 86750569 86750766 -64032787 + MIR SINE MIR 12 228 -34 278 299 13 0 chr11 86750815 86750892 -64032661 + GA-rich Low_complexity Low_complexity 4 81 0 219 380 66 8 chr11 86751012 86751133 -64032420 + L2 LINE L2 3141 3268 -4 375 321 38 4 chr11 86751530 86751673 -64031880 - MIR SINE MIR -65 143 46 332 305 48 60 chr11 86752169 86752422 -64031131 + LTR16B LTR ERVL 154 404 -60 4874 74 6 11 chr11 86752422 86753084 -64030469 - L1PA8A LINE L1 -2 6129 5471 332 305 48 60 chr11 86753084 86753145 -64030408 + LTR16B LTR ERVL 404 464 0 331 363 28 0 chr11 86753319 86753469 -64030084 - MIR3 SINE MIR -51 157 32 229 276 57 38 chr11 86753902 86754007 -64029546 - MIR SINE MIR -48 214 108 320 262 162 23 chr11 86754589 86754739 -64028814 + MIR3 SINE MIR 15 180 -28 199 316 0 0 chr11 86756304 86756361 -64027192 + L2 LINE L2 3241 3297 -16 186 330 0 34 chr11 86756375 86756463 -64027090 + L3 LINE CR1 1355 1439 -138 283 374 75 0 chr11 86757025 86757132 -64026421 + L2 LINE L2 3127 3241 -31 2078 150 0 16 chr11 86757135 86757448 -64026105 - AluSg SINE Alu 0 310 3 1800 161 14 77 chr11 86757881 86758297 -64025256 - MLT1B LTR MaLR 0 390 1 270 297 170 18 chr11 86759304 86759469 -64024084 + MIR SINE MIR 47 236 -26 295 302 73 25 chr11 86759806 86759964 -64023589 + MIR SINE MIR 36 199 -63 296 330 82 65 chr11 86760443 86760749 -64022804 - L2 LINE L2 0 3313 3003 597 309 113 32 chr11 86761077 86761539 -64022014 + L1ME3A LINE L1 134 632 -5487 2293 88 0 0 chr11 86761760 86762071 -64021482 + AluSx SINE Alu 1 311 0 237 171 0 0 chr11 86762115 86762156 -64021397 - MLT1G1 LTR MaLR -401 194 154 404 234 32 11 chr11 86762281 86762375 -64021178 + Tigger3b DNA MER2_type 7 102 -1129 * 4743 142 71 5 chr11 86762374 86763270 -64020283 + Tigger3b DNA MER2_type 275 1230 -1 350 269 72 43 chr11 86763363 86763642 -64019911 + L1ME3A LINE L1 964 1250 -4869 613 326 102 0 chr11 86763647 86763981 -64019572 + L1ME3A LINE L1 1302 1669 -4641 286 260 10 10 chr11 86764042 86764138 -64019415 + L1ME3A LINE L1 4907 5002 -1127 357 277 87 5 chr11 86764365 86764549 -64019004 + L1ME3A LINE L1 5316 5514 -635 363 289 75 91 chr11 86764551 86764869 -64018684 + L1ME3A LINE L1 5611 5923 -230 409 279 93 29 chr11 86764880 86765052 -64018501 + L1M4 LINE L1 4234 4416 -1730 23 92 0 0 chr11 86765215 86765280 -64018273 + AT_rich Low_complexity Low_complexity 1 65 0 361 316 69 31 chr11 86765723 86765960 -64017593 + MIR SINE MIR 3 256 -6 399 378 112 16 chr11 86766567 86766996 -64016557 - L3 LINE CR1 -270 1307 838 * 438 375 134 24 chr11 86766981 86767272 -64016281 - L2 LINE L2 0 3272 2950 355 306 16 0 chr11 86767272 86767393 -64016160 - MLT1G1 LTR MaLR -400 195 73 315 269 0 0 chr11 86767769 86767847 -64015706 + MIR SINE MIR 81 158 -104 307 328 48 8 chr11 86767894 86768019 -64015534 + L2 LINE L2 3160 3289 -24 202 324 59 53 chr11 86768166 86768336 -64015217 - MIR3 SINE MIR -4 204 34 531 268 79 0 chr11 86768975 86769139 -64014414 - MER5B DNA MER1_type -1 177 1 751 238 0 0 chr11 86769155 86769315 -64014238 - MER58B DNA MER1_type -8 333 174 2314 100 7 0 chr11 86769318 86769627 -64013926 + AluSq SINE Alu 1 311 -2 228 280 0 0 chr11 86769648 86769698 -64013855 - MER58B DNA MER1_type -286 55 6 191 250 12 0 chr11 86771277 86771361 -64012192 + (CCA)n Simple_repeat Simple_repeat 1 85 0 237 273 15 0 chr11 86771383 86771449 -64012104 + (CCA)n Simple_repeat Simple_repeat 2 68 0 572 333 63 4 chr11 86771489 86771726 -64011827 - MIR SINE MIR -5 257 7 536 284 81 34 chr11 86771719 86771955 -64011598 - MIR SINE MIR 0 262 16 * 218 244 0 0 chr11 86772688 86772733 -64010820 + MIR SINE MIR 130 174 -88 317 368 45 0 chr11 86772764 86772897 -64010656 - MIR3 SINE MIR -67 141 3 21 0 0 0 chr11 86773987 86774008 -64009545 + AT_rich Low_complexity Low_complexity 1 21 0 234 255 47 38 chr11 86774507 86774613 -64008940 - L2 LINE L2 -234 3038 2932 199 308 46 0 chr11 86774872 86774937 -64008616 + MIR SINE MIR 118 185 -77 782 292 153 33 chr11 86774970 86775546 -64008007 + L2 LINE L2 1532 2176 -1138 1511 144 0 26 chr11 86775558 86775822 -64007731 - L1PA10 LINE L1 -5 6163 5907 2261 83 17 4 chr11 86775825 86776289 -64007264 + L1PA10 LINE L1 5266 5902 -266 891 291 135 36 chr11 86776347 86776864 -64006689 + L2 LINE L2 2744 3310 -3 370 253 139 13 chr11 86777571 86777729 -64005824 - MIR SINE MIR -10 252 75 982 218 61 67 chr11 86777984 86778328 -64005225 + MER2 DNA MER2_type 2 343 -1 274 240 106 0 chr11 86779236 86779340 -64004213 + MER103 DNA DNA 8 122 -44 264 359 8 8 chr11 86779451 86779568 -64003985 + MIR SINE MIR 37 153 -109 385 303 21 33 chr11 86779953 86780111 -64003442 + MIR SINE MIR 36 193 -15 258 307 64 103 chr11 86780311 86780640 -64002913 + L2 LINE L2 2924 3239 -33 287 317 12 12 chr11 86781705 86781787 -64001766 + MIR SINE MIR 1 82 -180 540 231 146 61 chr11 86782107 86782401 -64001152 + L1ME2 LINE L1 40 358 -6038 26 50 0 0 chr11 86783181 86783221 -64000332 + AT_rich Low_complexity Low_complexity 1 40 0 5199 261 88 32 chr11 86784009 86786877 -63996676 + L1ME2 LINE L1 2322 5349 -866 1322 229 121 14 chr11 86786875 86787315 -63996238 + L1ME2 LINE L1 5700 6186 -47 * 355 296 53 33 chr11 86787978 86788130 -63995423 + MER5A DNA MER1_type 35 189 0 344 280 11 32 chr11 86788757 86788850 -63994703 + L2 LINE L2 3147 3237 -35 199 304 139 0 chr11 86789664 86789743 -63993810 - L2 LINE L2 -13 3259 3170 623 294 25 34 chr11 86789820 86790055 -63993498 - MIR SINE MIR -1 261 29 556 335 125 4 chr11 86790278 86790559 -63992994 + LTR33 LTR ERVL 3 317 -204 190 379 0 48 chr11 86791178 86791281 -63992272 - MIR SINE MIR -58 150 53 416 309 57 21 chr11 86792210 86792404 -63991149 - MIR SINE MIR -4 258 58 210 71 0 0 chr11 86792964 86792992 -63990561 + (CAATT)n Simple_repeat Simple_repeat 4 31 0 357 228 174 0 chr11 86793068 86793160 -63990393 + L2 LINE L2 3203 3310 -3 622 260 41 6 chr11 86793247 86793416 -63990137 + MIR SINE MIR 59 233 -29 216 189 0 0 chr11 86793464 86793501 -63990052 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 443 268 117 11 chr11 86794290 86794464 -63989089 - MIR SINE MIR -13 249 56 199 340 57 66 chr11 86794968 86795074 -63988479 - L2 LINE L2 -32 3240 3136 1183 267 86 34 chr11 86795526 86795991 -63987562 - MLT1E2 LTR MaLR 0 626 138 264 191 34 79 chr11 86796050 86796139 -63987414 - MLT1E2 LTR MaLR -569 85 1 233 309 111 63 chr11 86796615 86796822 -63986731 - L2 LINE L2 -411 2903 2687 721 263 19 5 chr11 86797397 86797606 -63985947 + L1ME3 LINE L1 5949 6160 -2 281 331 84 21 chr11 86797672 86797814 -63985739 - MIR SINE MIR -98 164 14 323 261 108 36 chr11 86798284 86798395 -63985158 + MER5A DNA MER1_type 69 187 -2 1039 213 72 52 chr11 86798625 86798987 -63984566 - L1ME1 LINE L1 -30 6136 5768 731 220 7 13 chr11 86800247 86800397 -63983156 + AluJb SINE Alu 137 285 -27 409 281 164 35 chr11 86800725 86800896 -63982657 + MIR SINE MIR 40 232 -30 23 33 0 0 chr11 86800898 86800928 -63982625 + AT_rich Low_complexity Low_complexity 1 30 0 5044 43 0 0 chr11 86801029 86801680 -63981873 - L1P LINE L1 -2128 4018 3368 7697 21 3 0 chr11 86801680 86802569 -63980984 + L1PA3 LINE L1 5258 6155 0 207 332 39 23 chr11 86802581 86802791 -63980762 - L2 LINE L2 -467 2847 2573 187 167 0 0 chr11 86803683 86803719 -63979834 - MIR SINE MIR -109 153 118 184 321 107 43 chr11 86803689 86803829 -63979724 - MIR3 SINE MIR -58 150 2 * 31 0 0 0 chr11 86804244 86804275 -63979278 + AT_rich Low_complexity Low_complexity 1 31 0 482 294 48 69 chr11 86805106 86805337 -63978216 + MIR SINE MIR 12 237 -25 315 322 41 7 chr11 86805522 86805668 -63977885 - MIR SINE MIR -46 216 66 770 268 85 24 chr11 86805670 86805916 -63977637 + MIR SINE MIR 2 262 0 202 300 0 0 chr11 86806358 86806408 -63977145 - L2 LINE L2 -2 3311 3262 21 36 0 0 chr11 86806563 86806591 -63976962 + AT_rich Low_complexity Low_complexity 1 28 0 205 203 0 58 chr11 86807036 86807105 -63976448 + GA-rich Low_complexity Low_complexity 4 68 0 * 206 340 0 0 chr11 86807057 86807110 -63976443 + polypurine Low_complexity Low_complexity 2 54 0 345 276 29 29 chr11 86807508 86807629 -63975924 - MIR3 SINE MIR -37 171 50 480 224 19 0 chr11 86808146 86808253 -63975300 + AluJb SINE Alu 1 109 -203 3703 184 42 42 chr11 86808454 86808963 -63974590 + L1 LINE L1 3863 4374 -1772 1913 138 25 0 chr11 86808963 86809238 -63974315 + AluSx SINE Alu 1 282 -30 3703 184 42 42 chr11 86809238 86809666 -63973887 + L1 LINE L1 4373 4800 -1346 214 209 0 0 chr11 86809683 86809726 -63973827 + L2 LINE L2 3138 3180 -92 236 247 21 20 chr11 86809760 86809847 -63973706 + GA-rich Low_complexity Low_complexity 1 87 0 401 167 48 12 chr11 86809881 86809965 -63973588 + L1 LINE L1 4712 4798 -1348 812 149 25 0 chr11 86809986 86810107 -63973446 - FLAM_C SINE Alu -19 124 1 2197 201 9 7 chr11 86810107 86810546 -63973007 - L1MB2 LINE L1 -43 6128 5689 183 80 0 0 chr11 86810743 86810768 -63972785 + (TTCCC)n Simple_repeat Simple_repeat 4 28 0 198 362 0 43 chr11 86811389 86811483 -63972070 - MIR SINE MIR -150 112 23 319 310 48 63 chr11 86813087 86813286 -63970267 + MIR SINE MIR 3 198 -60 186 191 0 0 chr11 86813608 86813650 -63969903 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 230 343 152 0 chr11 86813681 86813786 -63969767 - L2 LINE L2 -1 3271 3151 377 333 28 0 chr11 86814181 86814325 -63969228 - LTR33A LTR ERVL -9 514 367 507 250 40 0 chr11 86814363 86814487 -63969066 - LTR33A LTR ERVL -328 195 67 1255 206 94 25 chr11 86814682 86814837 -63968716 - AluJo SINE Alu -16 296 153 270 0 0 0 chr11 86814837 86814867 -63968686 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1255 206 94 25 chr11 86814867 86814988 -63968565 - AluJo SINE Alu -159 153 1 2432 98 0 0 chr11 86815004 86815311 -63968242 - AluSq SINE Alu -6 307 1 605 328 61 9 chr11 86815538 86815767 -63967786 - MIR SINE MIR -17 245 5 419 345 29 48 chr11 86816344 86816550 -63967003 - MIR SINE MIR -59 203 2 243 354 21 0 chr11 86817176 86817272 -63966281 - MIR SINE MIR -78 130 33 453 311 72 28 chr11 86817708 86817888 -63965665 - MIR SINE MIR -55 207 20 839 249 78 34 chr11 86818146 86818531 -63965022 + L1ME2 LINE L1 5433 5834 -328 499 254 30 0 chr11 86818943 86819077 -63964476 + MLT1H LTR MaLR 409 546 -3 189 297 119 50 chr11 86820583 86820785 -63962768 + L2 LINE L2 3073 3288 -25 612 275 51 0 chr11 86820924 86821102 -63962451 + MLT1E LTR MaLR 1 187 -406 912 239 31 13 chr11 86821114 86821340 -63962213 + MLT1E LTR MaLR 357 586 -7 217 345 17 34 chr11 86822097 86822216 -63961337 + MIR SINE MIR 16 132 -76 3331 154 14 21 chr11 86822322 86822951 -63960602 + L1MC1 LINE L1 5709 6333 0 2237 135 28 3 chr11 86823471 86823826 -63959727 + THE1B LTR MaLR 1 364 0 364 272 37 105 chr11 86824350 86824512 -63959041 + MIR SINE MIR 17 167 -95 23 0 0 0 chr11 86824649 86824672 -63958881 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr11 86824739 86824767 -63958786 + AT_rich Low_complexity Low_complexity 1 28 0 220 229 21 0 chr11 86824995 86825043 -63958510 + (TATATG)n Simple_repeat Simple_repeat 3 51 0 440 280 89 64 chr11 86826029 86826265 -63957288 - MIR SINE MIR -10 252 11 2078 112 14 0 chr11 86826475 86826760 -63956793 + AluSx SINE Alu 1 289 -23 269 320 86 23 chr11 86830609 86830784 -63952769 - MIR SINE MIR -28 234 49 195 327 58 67 chr11 86830938 86831012 -63952541 - L2 LINE L2 -4 3268 3194 1836 173 11 35 chr11 86831012 86831383 -63952170 + MLT1A1 LTR MaLR 1 362 -3 195 327 58 67 chr11 86831383 86831412 -63952141 - L2 LINE L2 -78 3194 3166 348 349 57 0 chr11 86831430 86831536 -63952017 - L2 LINE L2 -16 3256 3145 28 0 0 0 chr11 86831992 86832020 -63951533 + AT_rich Low_complexity Low_complexity 1 28 0 629 254 0 6 chr11 86832412 86832581 -63950972 + L1ME2 LINE L1 5988 6155 -9 1810 77 8 4 chr11 86833217 86833451 -63950102 + AluSq SINE Alu 74 308 -5 210 37 0 0 chr11 86833530 86833557 -63949996 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 253 216 7 105 chr11 86834812 86834913 -63948640 + MIR3 SINE MIR 105 193 -15 28 29 0 0 chr11 86835437 86835472 -63948081 + AT_rich Low_complexity Low_complexity 1 35 0 1960 135 18 29 chr11 86835479 86835820 -63947733 - MER44D DNA MER2_type -1 608 2 287 280 87 73 chr11 86835945 86836095 -63947458 + MIR SINE MIR 39 190 -72 745 306 50 89 chr11 86836275 86837007 -63946546 + HAL1 LINE L1 21 724 -1783 195 42 0 0 chr11 86837044 86837068 -63946485 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 445 338 71 52 chr11 86837112 86837577 -63945976 + HAL1 LINE L1 755 1228 -1279 922 256 29 22 chr11 86837580 86837854 -63945699 + MER92C LTR ERV1 277 552 -2 642 294 188 21 chr11 86837870 86838023 -63945530 + HAL1 LINE L1 1275 1401 -1106 1247 195 41 105 chr11 86838023 86838413 -63945140 - MLT1A1 LTR MaLR 0 365 1 642 294 188 21 chr11 86838413 86838909 -63944644 + HAL1 LINE L1 1401 2032 -475 3828 79 0 15 chr11 86838914 86839098 -63944455 + L1PA8 LINE L1 5645 5830 -342 2196 88 11 0 chr11 86839098 86839382 -63944171 + AluSx SINE Alu 23 309 -3 3828 79 0 15 chr11 86839382 86839730 -63943823 + L1PA8 LINE L1 5830 6169 -3 248 327 38 45 chr11 86839864 86840130 -63943423 + HAL1 LINE L1 2244 2507 0 427 296 128 39 chr11 86840582 86840761 -63942792 - MIR SINE MIR -6 256 62 6058 36 0 0 chr11 86841072 86841789 -63941764 - L1PA3 LINE L1 -1 6154 5438 1936 152 3 3 chr11 86841789 86842092 -63941461 - AluJb SINE Alu -9 303 1 1026 142 0 0 chr11 86842428 86842583 -63940970 - AluJb SINE Alu -2 310 156 282 379 68 0 chr11 86842626 86842758 -63940795 + L2 LINE L2 3132 3272 0 326 256 12 0 chr11 86842919 86843001 -63940552 - MIR SINE MIR 0 262 180 1351 218 44 31 chr11 86844726 86845111 -63938442 - MLT1B LTR MaLR 0 390 1 319 380 61 40 chr11 86845247 86845544 -63938009 + L2 LINE L2 2600 2902 -412 986 251 45 71 chr11 86845854 86846415 -63937138 + L1ME LINE L1 192 737 -5468 1052 263 109 22 chr11 86846496 86847081 -63936472 + L1ME LINE L1 1624 2259 -4137 299 326 49 33 chr11 86849435 86849619 -63933934 + MIR SINE MIR 61 247 -15 926 253 59 4 chr11 86850183 86850420 -63933133 + MIR SINE MIR 2 251 -11 355 318 48 8 chr11 86850607 86850733 -63932820 + L2 LINE L2 3183 3313 0 373 213 80 80 chr11 86852278 86852428 -63931125 - MIR SINE MIR -64 198 49 257 275 201 58 chr11 86852820 86853009 -63930544 + L2 LINE L2 3044 3259 -13 613 347 91 28 chr11 86853012 86853439 -63930114 + LTR33 LTR ERVL 1 454 -67 342 316 36 7 chr11 86853506 86853645 -63929908 + MIR SINE MIR 103 245 -17 1875 65 8 24 chr11 86853686 86853934 -63929619 + AluSq SINE Alu 65 308 -5 280 214 226 0 chr11 86854028 86854112 -63929441 - L2 LINE L2 0 3272 3170 * 341 321 121 46 chr11 86854110 86854456 -63929097 + L2 LINE L2 2560 2931 -383 1056 78 13 20 chr11 86854562 86854715 -63928838 - L1PA8 LINE L1 -9 6163 6012 520 211 54 20 chr11 86855033 86855180 -63928373 + MIR SINE MIR 96 247 -15 192 40 0 0 chr11 86855632 86855657 -63927896 + (TG)n Simple_repeat Simple_repeat 2 26 0 286 238 36 0 chr11 86855666 86855750 -63927803 + (TA)n Simple_repeat Simple_repeat 2 88 0 267 175 21 10 chr11 86856320 86856417 -63927136 + (TA)n Simple_repeat Simple_repeat 1 98 0 461 100 0 14 chr11 86856417 86856487 -63927066 - L1PA8 LINE L1 -18 6154 6086 395 77 0 0 chr11 86856487 86856539 -63927014 + L1P3 LINE L1 5762 5813 -341 304 192 0 0 chr11 86856632 86856684 -63926869 + MIR SINE MIR 103 154 -108 182 250 0 0 chr11 86856757 86856809 -63926744 + MIR SINE MIR 179 230 -32 216 371 106 8 chr11 86856950 86857082 -63926471 - L2 LINE L2 -10 3262 3118 1241 266 102 23 chr11 86858554 86858987 -63924566 - MLT1C LTR MaLR 0 467 1 394 293 23 45 chr11 86858988 86859121 -63924432 + MIR SINE MIR 36 165 -97 201 307 34 34 chr11 86859286 86859374 -63924179 - L2 LINE L2 -209 3063 2976 364 299 171 0 chr11 86859747 86859864 -63923689 + L2 LINE L2 3136 3272 0 312 269 76 50 chr11 86860021 86860140 -63923413 + L2 LINE L2 2633 2754 -560 468 282 19 39 chr11 86860140 86860296 -63923257 + MLT1H1 LTR MaLR 1 153 -402 646 241 73 21 chr11 86860298 86860489 -63923064 + L2 LINE L2 3113 3313 0 389 289 25 16 chr11 86861253 86861374 -63922179 + L2 LINE L2 3187 3308 -5 2480 158 74 23 chr11 86861721 86862235 -63921318 - L1MA7 LINE L1 -9 6282 5743 3577 163 6 27 chr11 86862243 86862593 -63920960 + L1M2 LINE L1 4736 5092 -1199 1919 146 11 0 chr11 86862593 86862921 -63920632 - AluSx SINE Alu 0 331 1 3577 163 6 27 chr11 86862921 86863601 -63919952 + L1M2 LINE L1 5092 5742 -549 195 343 55 0 chr11 86863770 86863843 -63919710 - L2 LINE L2 0 3272 3196 213 291 35 23 chr11 86864864 86864950 -63918603 + L2 LINE L2 942 1028 -2286 1001 301 69 79 chr11 86865121 86865872 -63917681 + L2 LINE L2 2156 2899 -415 428 233 180 0 chr11 86865874 86866046 -63917507 - L2 LINE L2 -4 3309 3107 4621 176 34 33 chr11 86866050 86866775 -63916778 + L1MA4 LINE L1 4674 5397 -903 2011 129 7 32 chr11 86866775 86867084 -63916469 + AluSx SINE Alu 1 301 -11 4621 176 34 33 chr11 86867084 86867967 -63915586 + L1MA4 LINE L1 5397 6300 0 698 328 37 35 chr11 86868007 86868413 -63915140 + L2 LINE L2 2906 3312 -1 265 324 51 40 chr11 86868709 86868885 -63914668 + MIR SINE MIR 32 209 -53 1331 283 21 9 chr11 86868944 86869364 -63914189 - LTR16A LTR ERVL 0 450 26 433 389 28 0 chr11 86869420 86869564 -63913989 - L2 LINE L2 -2 3270 3123 569 300 19 67 chr11 86870616 86870826 -63912727 - MIR SINE MIR -15 247 48 704 260 44 0 chr11 86870983 86871164 -63912389 - MER20 DNA MER1_type 0 219 31 3754 192 13 5 chr11 86871785 86872575 -63910978 - L1MA10 LINE L1 -887 5259 4464 * 4884 193 24 29 chr11 86872572 86872624 -63910929 + L1MA10 LINE L1 5254 5305 -1029 197 32 0 32 chr11 86872624 86872655 -63910898 + (CA)n Simple_repeat Simple_repeat 1 30 0 4884 193 24 29 chr11 86872655 86873687 -63909866 + L1MA10 LINE L1 5305 6333 -1 335 290 131 51 chr11 86873872 86874086 -63909467 - MIR SINE MIR -12 250 20 596 340 35 0 chr11 86874340 86874543 -63909010 + MIR SINE MIR 48 257 -5 185 300 14 43 chr11 86874554 86874624 -63908929 - L2 LINE L2 0 3272 3205 315 197 132 0 chr11 86874624 86874700 -63908853 - L2 LINE L2 -8 3305 3220 582 297 21 16 chr11 86874932 86875124 -63908429 - MIR SINE MIR -37 225 33 283 307 131 29 chr11 86875560 86875697 -63907856 + MER5A DNA MER1_type 36 186 -3 279 0 0 0 chr11 86875956 86875987 -63907566 + (TG)n Simple_repeat Simple_repeat 2 32 0 416 235 52 17 chr11 86878835 86878950 -63904603 + MIR SINE MIR 105 223 -39 285 322 53 35 chr11 86879670 86879828 -63903725 + MIR SINE MIR 39 201 -61 276 365 44 51 chr11 86879822 86880096 -63903457 - L2 LINE L2 0 3272 3001 * 1885 101 71 0 chr11 86880181 86880478 -63903075 + AluSx SINE Alu 1 316 0 439 284 130 19 chr11 86880564 86880779 -63902774 + MIR SINE MIR 24 262 0 797 255 102 0 chr11 86880815 86881050 -63902503 - MIR SINE MIR 0 262 4 239 331 8 54 chr11 86882129 86882259 -63901294 - L2 LINE L2 -3 3310 3187 2257 105 0 7 chr11 86883226 86883520 -63900033 - AluSc SINE Alu -17 292 1 478 211 11 0 chr11 86883761 86883856 -63899697 - MER20 DNA MER1_type -1 218 123 1906 146 17 0 chr11 86883917 86884212 -63899341 - AluSx SINE Alu -12 300 1 374 249 87 92 chr11 86884472 86884657 -63898896 + MIR SINE MIR 73 256 -6 354 300 25 16 chr11 86885061 86885212 -63898341 + MIR SINE MIR 21 173 -35 26 30 0 0 chr11 86885499 86885532 -63898021 + AT_rich Low_complexity Low_complexity 1 33 0 336 271 42 35 chr11 86886968 86887112 -63896441 - MIR3 SINE MIR -48 160 16 195 162 0 0 chr11 86887504 86887541 -63896012 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 617 281 67 22 chr11 86887743 86887967 -63895586 + MIR SINE MIR 1 234 -28 1033 182 5 0 chr11 86888939 86889126 -63894427 + L1PA16 LINE L1 5970 6157 -9 194 285 161 58 chr11 86889314 86889605 -63893948 + L2 LINE L2 2613 2933 -381 279 297 45 63 chr11 86889881 86889992 -63893561 + L2 LINE L2 3122 3230 -42 186 103 0 0 chr11 86890037 86890066 -63893487 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 380 345 42 5 chr11 86890140 86890331 -63893222 - MIR SINE MIR -29 233 36 1276 217 40 71 chr11 86890576 86890961 -63892592 + MLT2D LTR ERVL 1 483 -37 468 0 0 0 chr11 86890961 86891013 -63892540 + (CA)n Simple_repeat Simple_repeat 2 53 0 1276 217 40 71 chr11 86891013 86891039 -63892514 + MLT2D LTR ERVL 483 508 -12 2253 92 7 0 chr11 86891067 86891371 -63892182 - AluSp SINE Alu -7 306 1 422 240 30 0 chr11 86891408 86891508 -63892045 - MER5A DNA MER1_type -78 111 9 367 286 0 93 chr11 86891561 86891701 -63891852 + MIR SINE MIR 104 230 -32 903 162 46 6 chr11 86891796 86891969 -63891584 + MER20 DNA MER1_type 23 202 -17 183 281 169 0 chr11 86891971 86892060 -63891493 - MIR SINE MIR -85 177 74 384 362 96 28 chr11 86892804 86893191 -63890362 + HERV16 LTR ERVL 1109 1521 -3475 470 290 88 0 chr11 86893258 86893451 -63890102 + HERV16 LTR ERVL 1688 1897 -3099 300 139 0 0 chr11 86893524 86893567 -63889986 - Alu SINE Alu -257 45 3 933 259 56 50 chr11 86893810 86894639 -63888914 - L1MEc LINE L1 -3474 2741 1948 275 333 21 0 chr11 86894993 86895086 -63888467 - MIR SINE MIR -126 136 42 368 282 24 32 chr11 86895137 86895261 -63888292 + L2 LINE L2 3189 3311 -2 377 310 101 16 chr11 86895556 86895685 -63887868 - MER91C DNA MER1_type 0 140 1 807 265 98 42 chr11 86895953 86896250 -63887303 + L2 LINE L2 1855 2181 -1133 897 214 0 6 chr11 86896250 86896428 -63887125 + MER5B DNA MER1_type 1 177 -1 807 265 98 42 chr11 86896428 86896530 -63887023 + L2 LINE L2 2181 2276 -1038 627 318 32 18 chr11 86896753 86896973 -63886580 - MIR SINE MIR -16 246 24 412 340 53 16 chr11 86897076 86897264 -63886289 - MIR3 SINE MIR -1 207 13 337 333 86 24 chr11 86897841 86898051 -63885502 + MIR SINE MIR 34 256 -6 208 309 122 92 chr11 86898150 86898412 -63885141 - L2 LINE L2 0 3272 3003 264 296 0 0 chr11 86898689 86898760 -63884793 + CT-rich Low_complexity Low_complexity 2 72 0 263 261 50 68 chr11 86898766 86898927 -63884626 - MIR SINE MIR -73 189 32 568 289 24 59 chr11 86899805 86900058 -63883495 - MIR SINE MIR -10 252 9 217 211 0 0 chr11 86900346 86900384 -63883169 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 392 353 58 61 chr11 86901020 86901465 -63882088 - L2 LINE L2 -1 3271 2828 466 256 19 31 chr11 86901602 86901762 -63881791 + MLT1H LTR MaLR 376 533 -16 6991 50 7 1 chr11 86901789 86902731 -63880822 + L1PA7 LINE L1 5192 6138 -16 180 0 0 0 chr11 86902735 86902755 -63880798 + (CAA)n Simple_repeat Simple_repeat 2 21 0 272 342 94 7 chr11 86902994 86903143 -63880410 + MIR SINE MIR 32 193 -69 359 336 34 0 chr11 86903705 86903851 -63879702 + L2 LINE L2 3159 3309 -4 244 388 0 0 chr11 86903852 86903932 -63879621 - MIR SINE MIR -87 121 42 2170 199 16 71 chr11 86904162 86904710 -63878843 - MLT2B1 LTR ERVL -2 518 1 443 284 125 17 chr11 86904800 86904976 -63878577 - MIR SINE MIR -59 203 9 343 252 67 34 chr11 86905804 86905923 -63877630 - L2 LINE L2 -9 3263 3141 238 323 0 0 chr11 86906027 86906089 -63877464 + MER63 DNA MER1_type 695 756 -306 400 221 0 0 chr11 86906107 86906184 -63877369 + MER63 DNA MER1_type 985 1061 0 243 337 99 44 chr11 86906195 86906521 -63877032 - L2 LINE L2 -182 3090 2740 22 80 0 0 chr11 86906911 86906961 -63876592 + AT_rich Low_complexity Low_complexity 1 50 0 248 280 40 0 chr11 86907006 86907106 -63876447 - L1ME LINE L1 -299 5822 5719 25 31 0 0 chr11 86908249 86908281 -63875272 + AT_rich Low_complexity Low_complexity 1 32 0 210 329 43 0 chr11 86908308 86908378 -63875175 - L2 LINE L2 -268 3004 2932 324 337 103 23 chr11 86908564 86908864 -63874689 - L2 LINE L2 -701 2613 2290 206 325 46 53 chr11 86909690 86909841 -63873712 - MER5A DNA MER1_type -39 150 1 208 337 0 24 chr11 86909848 86909931 -63873622 + MIR SINE MIR 19 99 -109 181 357 71 24 chr11 86910302 86910386 -63873167 + L2 LINE L2 3143 3230 -42 1446 187 99 0 chr11 86910595 86910879 -63872674 + AluJo SINE Alu 1 312 0 370 324 112 17 chr11 86911021 86911200 -63872353 - L2 LINE L2 -1 3312 3117 1693 194 48 14 chr11 86911304 86911655 -63871898 + MLT1A1 LTR MaLR 3 365 0 213 333 51 58 chr11 86911765 86911903 -63871650 - L2 LINE L2 -462 2852 2716 21 0 0 0 chr11 86912073 86912094 -63871459 + AT_rich Low_complexity Low_complexity 1 21 0 362 196 65 37 chr11 86912225 86912332 -63871221 - MLT1I LTR MaLR -2 407 298 253 296 10 20 chr11 86912472 86912570 -63870983 - MLT1I LTR MaLR -312 97 1 1394 188 38 27 chr11 86912920 86913088 -63870465 - AluJo SINE Alu -17 295 121 495 0 0 0 chr11 86913088 86913143 -63870410 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1394 188 38 27 chr11 86913143 86913266 -63870287 - AluJo SINE Alu -191 121 1 231 36 0 0 chr11 86913355 86913383 -63870170 + (A)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr11 86913414 86913437 -63870116 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr11 86913605 86913632 -63869921 + (A)n Simple_repeat Simple_repeat 1 27 0 461 288 92 6 chr11 86913918 86914081 -63869472 + MIR SINE MIR 49 225 -37 250 183 100 0 chr11 86916262 86916322 -63867231 - MIR SINE MIR -75 187 122 1878 153 6 25 chr11 86916446 86916760 -63866793 - AluSx SINE Alu -4 308 1 2096 144 3 0 chr11 86916978 86917283 -63866270 + AluSg SINE Alu 1 306 -4 401 210 101 0 chr11 86917342 86917461 -63866092 + MER96B DNA MER1_type? 286 416 -1 285 302 58 12 chr11 86918197 86918283 -63865270 + MIR3 SINE MIR 111 200 -8 480 160 20 20 chr11 86918388 86918488 -63865065 + Tigger3(Golem) DNA MER2_type 2839 2938 -91 263 337 69 0 chr11 86918625 86918726 -63864827 + L2 LINE L2 3149 3256 -16 689 309 62 0 chr11 86918913 86919156 -63864397 + MIR SINE MIR 4 261 -1 1840 181 18 0 chr11 86919565 86919907 -63863646 + MER7A DNA MER2_type 1 346 0 1475 159 119 51 chr11 86920412 86920783 -63862770 - MSTD LTR MaLR 0 396 1 220 294 50 76 chr11 86920783 86920892 -63862661 - L2 LINE L2 -16 3256 3149 216 111 56 0 chr11 86921181 86921217 -63862336 - MIR SINE MIR -100 162 125 24 0 0 0 chr11 86921327 86921351 -63862202 + AT_rich Low_complexity Low_complexity 1 24 0 183 308 0 0 chr11 86921425 86921464 -63862089 - MIR SINE MIR -59 149 111 224 213 16 0 chr11 86921535 86921596 -63861957 + (TA)n Simple_repeat Simple_repeat 2 63 0 321 312 33 81 chr11 86921604 86921840 -63861713 - MIR SINE MIR -2 260 37 358 294 114 57 chr11 86922388 86922616 -63860937 + MIR SINE MIR 20 260 -2 374 151 14 0 chr11 86923461 86923534 -63860019 + CT-rich Low_complexity Low_complexity 3 76 0 2257 106 10 6 chr11 86924305 86924617 -63858936 - AluSp SINE Alu 0 313 1 267 264 182 9 chr11 86924622 86924732 -63858821 + L2 LINE L2 3175 3303 -10 257 248 28 121 chr11 86925497 86925638 -63857915 + MIR SINE MIR 4 131 -131 1557 231 21 29 chr11 86925672 86926058 -63857495 + LTR16C LTR ERVL 107 489 -2 320 278 106 7 chr11 86926058 86926209 -63857344 + MIR SINE MIR 97 262 0 316 345 68 48 chr11 86926244 86926493 -63857060 - L2 LINE L2 -37 3235 2982 243 217 0 0 chr11 86926493 86926553 -63857000 + (TG)n Simple_repeat Simple_repeat 1 60 0 2419 67 3 3 chr11 86927970 86928270 -63855283 - AluY SINE Alu -11 300 1 192 250 161 0 chr11 86928722 86928778 -63854775 + L2 LINE L2 2996 3060 -212 234 369 36 36 chr11 86929241 86929409 -63854144 - MIR SINE MIR -44 218 51 345 82 0 0 chr11 86929586 86929635 -63853918 + (CA)n Simple_repeat Simple_repeat 2 50 0 209 147 0 0 chr11 86929722 86929756 -63853797 + L2 LINE L2 3263 3296 -17 942 326 140 25 chr11 86929960 86930700 -63852853 - L2 LINE L2 -1 3312 2499 1133 117 152 0 chr11 86930735 86930932 -63852621 - MER30 DNA MER1_type 0 230 4 236 254 84 0 chr11 86930971 86931042 -63852511 - MIR SINE MIR 0 262 186 23 33 0 0 chr11 86931791 86931821 -63851732 + AT_rich Low_complexity Low_complexity 1 30 0 245 377 9 0 chr11 86932208 86932314 -63851239 + MIR3 SINE MIR 96 202 -6 338 317 65 46 chr11 86932574 86932899 -63850654 + L1M4 LINE L1 3438 3768 -2378 298 313 9 0 chr11 86933164 86933279 -63850274 + L1M4 LINE L1 4069 4184 -1962 581 224 122 6 chr11 86933291 86933541 -63850012 + MER46C DNA MER2_type 2 322 -16 6091 51 5 3 chr11 86933630 86934395 -63849158 + L1PA4 LINE L1 5387 6153 -2 22 0 0 0 chr11 86934409 86934431 -63849122 + AT_rich Low_complexity Low_complexity 1 22 0 1906 136 58 0 chr11 86934551 86934846 -63848707 - AluSx SINE Alu 0 312 1 1411 125 21 12 chr11 86935073 86935313 -63848240 - L1PA10 LINE L1 -5 6163 5922 190 320 87 19 chr11 86935346 86935449 -63848104 + MIR SINE MIR 48 157 -105 444 314 98 7 chr11 86935811 86935964 -63847589 - MIR SINE MIR -61 201 35 354 351 99 59 chr11 86936726 86937130 -63846423 - L2 LINE L2 -8 3264 2845 432 273 0 0 chr11 86937414 86937513 -63846040 + MER5A DNA MER1_type 11 109 -80 240 239 239 8 chr11 86937710 86937827 -63845726 - MIR SINE MIR -42 220 77 2856 7 0 0 chr11 86938567 86938877 -63844676 + AluYa5 SINE Alu 1 310 -1 258 275 9 9 chr11 86938987 86939096 -63844457 + Alu SINE Alu 192 300 0 263 333 85 61 chr11 86939415 86939580 -63843973 + L2 LINE L2 3071 3239 -33 21 0 0 0 chr11 86941368 86941389 -63842164 + AT_rich Low_complexity Low_complexity 1 21 0 246 208 0 0 chr11 86942527 86942580 -63840973 + (TATG)n Simple_repeat Simple_repeat 2 54 0 396 362 18 0 chr11 86942962 86943125 -63840428 + MIR SINE MIR 89 254 -8 261 83 0 0 chr11 86943387 86943423 -63840130 + (T)n Simple_repeat Simple_repeat 1 36 0 2199 126 3 7 chr11 86943594 86943904 -63839649 - AluSx SINE Alu 0 312 4 308 301 150 21 chr11 86943919 86944085 -63839468 - MIR SINE MIR -74 188 1 263 175 18 0 chr11 86944151 86944208 -63839345 + CT-rich Low_complexity Low_complexity 3 60 0 318 275 23 92 chr11 86944337 86944468 -63839085 + MIR3 SINE MIR 78 199 -9 429 263 51 42 chr11 86944627 86944745 -63838808 - MIR SINE MIR -124 138 20 601 267 55 10 chr11 86944840 86945042 -63838511 - MIR SINE MIR 0 262 52 562 304 26 18 chr11 86945839 86946033 -63837520 - MIR SINE MIR -52 210 17 712 250 91 14 chr11 86946043 86946251 -63837302 + MIR SINE MIR 2 225 -37 368 321 50 21 chr11 86946555 86946695 -63836858 - MIR SINE MIR -74 188 45 534 317 69 58 chr11 86946824 86947275 -63836278 - L2 LINE L2 0 3272 2817 228 135 0 0 chr11 86947620 86947657 -63835896 + (TA)n Simple_repeat Simple_repeat 2 38 0 385 288 114 55 chr11 86947696 86947932 -63835621 - MIR SINE MIR 0 262 13 21 0 0 0 chr11 86947971 86947992 -63835561 + AT_rich Low_complexity Low_complexity 1 21 0 274 309 27 9 chr11 86948354 86948464 -63835089 + L2 LINE L2 2952 3063 -209 339 279 101 8 chr11 86948591 86948720 -63834833 - MIR SINE MIR -30 232 92 1958 116 31 3 chr11 86948746 86949040 -63834513 - AluSx SINE Alu -10 302 1 856 256 37 16 chr11 86949217 86949459 -63834094 + MIR SINE MIR 16 262 0 247 319 127 38 chr11 86949493 86949650 -63833903 + L3 LINE CR1 1077 1247 -330 234 299 83 56 chr11 86949728 86949922 -63833631 - MIR SINE MIR -11 197 2 280 289 113 10 chr11 86950012 86950109 -63833444 + L3 LINE CR1 1277 1383 -194 27235 124 10 17 chr11 86950132 86956284 -63827269 + L1PA8 LINE L1 340 6487 0 215 292 109 22 chr11 86956299 86956436 -63827117 + MIR SINE MIR 57 205 -57 205 354 0 30 chr11 86956484 86956583 -63826970 + L3 LINE CR1 1380 1475 -102 217 257 171 0 chr11 86957519 86957589 -63825964 + L3 LINE CR1 1096 1177 -400 265 265 15 15 chr11 86958137 86958205 -63825348 + L2 LINE L2 3201 3268 -4 987 156 0 0 chr11 86958384 86958544 -63825009 + AluSg/x SINE Alu 144 303 -9 289 200 0 0 chr11 86959373 86959423 -63824130 - L2 LINE L2 -9 3304 3255 227 175 18 0 chr11 86959463 86959520 -63824033 + CT-rich Low_complexity Low_complexity 2 59 0 260 343 111 0 chr11 86959520 86959628 -63823925 - L2 LINE L2 0 3272 3153 327 113 169 0 chr11 86960012 86960083 -63823470 + L1PA13 LINE L1 6071 6153 -10 264 302 0 0 chr11 86960254 86960317 -63823236 + polypyrimidine Low_complexity Low_complexity 3 65 0 183 273 109 0 chr11 86960831 86960886 -63822667 - MIR SINE MIR -63 145 85 464 168 22 26 chr11 86961034 86961171 -63822382 + MER5A DNA MER1_type 4 189 0 369 0 0 0 chr11 86961193 86961234 -63822319 + (A)n Simple_repeat Simple_repeat 1 41 0 31 0 0 0 chr11 86961234 86961265 -63822288 + GC_rich Low_complexity Low_complexity 1 31 0 360 0 0 0 chr11 86961431 86961471 -63822082 + (A)n Simple_repeat Simple_repeat 1 40 0 195 398 9 0 chr11 86961560 86961668 -63821885 - L2 LINE L2 -341 2972 2864 195 175 75 0 chr11 86961801 86961841 -63821712 + L2 LINE L2 3261 3303 -10 236 353 59 29 chr11 86961965 86962101 -63821452 - MIR SINE MIR -55 153 14 408 298 125 12 chr11 86962777 86962945 -63820608 - MIR SINE MIR -10 252 66 199 333 28 0 chr11 86963113 86963185 -63820368 + MIR SINE MIR 176 249 -13 206 309 134 31 chr11 86964365 86964462 -63819091 + MIR SINE MIR 45 151 -111 240 136 45 0 chr11 86964611 86964655 -63818898 - MSTA LTR MaLR 0 428 383 8251 178 19 14 chr11 86964655 86966248 -63817305 + MSTA-int LTR MaLR 51 1651 0 2103 194 49 5 chr11 86966248 86966656 -63816897 + MSTA LTR MaLR 1 426 -2 245 333 29 19 chr11 86966657 86966762 -63816791 - MIR SINE MIR -154 108 3 218 278 19 0 chr11 86966800 86966854 -63816699 + L2 LINE L2 3210 3264 -8 37 69 0 0 chr11 86967079 86967151 -63816402 + AT_rich Low_complexity Low_complexity 1 72 0 183 215 62 62 chr11 86967554 86967619 -63815934 + MIR SINE MIR 172 236 -26 405 299 186 10 chr11 86968316 86968520 -63815033 + MIR SINE MIR 17 256 -6 21 0 0 0 chr11 86968628 86968649 -63814904 + AT_rich Low_complexity Low_complexity 1 21 0 375 313 8 45 chr11 86968855 86969101 -63814452 + L1MEc LINE L1 39 275 -6121 1902 110 30 40 chr11 86970101 86970402 -63813151 - AluY SINE Alu -13 298 1 537 211 123 0 chr11 86971010 86971124 -63812429 + MIR SINE MIR 18 145 -117 459 376 0 0 chr11 86971241 86971411 -63812142 + MIR SINE MIR 7 176 -86 462 108 0 0 chr11 86972011 86972085 -63811468 + (TCCA)n Simple_repeat Simple_repeat 1 74 0 1825 122 14 54 chr11 86972103 86972426 -63811127 + AluSx SINE Alu 1 311 0 1008 289 70 20 chr11 86972738 86973278 -63810275 - L1ME3A LINE L1 -224 5946 5380 * 3632 191 20 36 chr11 86973268 86973614 -63809939 - L1MB1 LINE L1 -1 6403 6053 2248 120 13 0 chr11 86973614 86973922 -63809631 - AluSx SINE Alu 0 312 1 3632 191 20 36 chr11 86973922 86974571 -63808982 - L1MB1 LINE L1 -351 6053 5419 3594 186 55 18 chr11 86974569 86975481 -63808072 - L1MB1 LINE L1 -1210 5172 4227 * 2311 240 60 25 chr11 86975470 86976138 -63807415 - L1MB1 LINE L1 -2979 3403 2759 * 390 115 0 0 chr11 86976138 86976199 -63807354 + (TA)n Simple_repeat Simple_repeat 2 62 0 2311 240 60 25 chr11 86976199 86976866 -63806687 - L1MB1 LINE L1 -3623 2759 2017 25 0 0 0 chr11 86976866 86976891 -63806662 + AT_rich Low_complexity Low_complexity 1 25 0 1800 273 111 8 chr11 86976921 86977956 -63805597 - L1MB1 LINE L1 -4513 1871 800 933 287 89 53 chr11 86978290 86978921 -63804632 - L1M3de LINE L1 -5213 678 9 24 32 0 0 chr11 86979471 86979502 -63804051 + AT_rich Low_complexity Low_complexity 1 31 0 190 317 30 106 chr11 86979802 86980001 -63803552 - L2 LINE L2 -173 3099 2916 396 246 116 55 chr11 86980105 86980188 -63803365 - LTR33 LTR ERVL -7 514 437 4864 58 87 0 chr11 86980188 86980821 -63802732 + LTR12 LTR ERV1 1 688 0 396 246 116 55 chr11 86980821 86980936 -63802617 - LTR33 LTR ERVL -84 437 304 364 223 136 0 chr11 86981005 86981108 -63802445 - LTR33 LTR ERVL -320 201 85 252 222 32 0 chr11 86981975 86982038 -63801515 + MLT1K LTR MaLR 523 587 -1 634 275 177 31 chr11 86982042 86982398 -63801155 + L2 LINE L2 2903 3310 -3 205 265 0 0 chr11 86982408 86982457 -63801096 - MIR SINE MIR -16 246 198 275 300 12 0 chr11 86982549 86982629 -63800924 + L2 LINE L2 3153 3233 -39 763 264 28 6 chr11 86982958 86983140 -63800413 - MIR SINE MIR -69 193 8 201 328 99 46 chr11 86983585 86983716 -63799837 + MIR SINE MIR 9 146 -116 189 74 0 0 chr11 86984004 86984031 -63799522 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 706 283 43 0 chr11 86986209 86986396 -63797157 + MIR SINE MIR 12 206 -56 187 212 0 0 chr11 86986616 86986649 -63796904 + MIR SINE MIR 197 229 -33 444 157 37 9 chr11 86987000 86987108 -63796445 + GA-rich Low_complexity Low_complexity 3 113 0 679 244 70 28 chr11 86987157 86987370 -63796183 + MIR SINE MIR 41 262 0 191 316 38 0 chr11 86987372 86987451 -63796102 - MIR SINE MIR -19 243 162 251 250 0 31 chr11 86987493 86987557 -63795996 - MIR SINE MIR -179 83 22 537 161 250 0 chr11 86987845 86987969 -63795584 - MER5A DNA MER1_type -2 187 33 387 240 48 40 chr11 86988051 86988176 -63795377 - MIR SINE MIR -109 153 28 563 332 51 53 chr11 86988369 86988587 -63794966 + L1ME4a LINE L1 5458 5676 -445 501 84 0 0 chr11 86988587 86988658 -63794895 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 563 332 51 53 chr11 86988658 86988870 -63794683 + L1ME4a LINE L1 5676 5887 -234 24 32 0 0 chr11 86989938 86989969 -63793584 + AT_rich Low_complexity Low_complexity 1 31 0 316 219 124 36 chr11 86990044 86990181 -63793372 - L1ME4a LINE L1 -237 5884 5736 623 294 17 0 chr11 86990529 86990709 -63792844 + MIR SINE MIR 80 262 0 238 296 112 16 chr11 86990879 86991004 -63792549 + MIR SINE MIR 69 205 -57 2233 59 41 3 chr11 86991025 86991315 -63792238 - AluYa5 SINE Alu -10 301 1 208 150 0 25 chr11 86991471 86991511 -63792042 + (GGAGA)n Simple_repeat Simple_repeat 4 42 0 306 293 54 54 chr11 86991982 86992204 -63791349 - L1ME4a LINE L1 -915 5231 5010 208 178 67 0 chr11 86992359 86992404 -63791149 - MIR SINE MIR -83 179 132 626 323 62 4 chr11 86992409 86992635 -63790918 - MIR SINE MIR -11 251 13 201 74 0 0 chr11 86992718 86992745 -63790808 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 205 204 73 95 chr11 86993034 86993171 -63790382 + L3b LINE CR1 1133 1266 -317 184 276 30 104 chr11 86993448 86993582 -63789971 + L2 LINE L2 2841 2964 -349 347 281 42 0 chr11 86993633 86993729 -63789824 - MIR SINE MIR -70 192 93 301 297 318 8 chr11 86993791 86994027 -63789526 + L2 LINE L2 3005 3313 0 222 312 75 98 chr11 86994032 86994327 -63789226 + L3 LINE CR1 990 1277 -300 2467 80 3 0 chr11 86995238 86995550 -63788003 - AluSp SINE Alu 0 313 1 261 0 0 0 chr11 86996181 86996210 -63787343 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 315 0 0 0 chr11 86996209 86996244 -63787309 + (GA)n Simple_repeat Simple_repeat 2 36 0 207 267 50 0 chr11 86996488 86996548 -63787005 - MIR SINE MIR -76 186 124 925 285 40 37 chr11 86999384 86999787 -63783766 + LTR16A LTR ERVL 12 415 -35 226 217 33 17 chr11 86999835 86999895 -63783658 - MIR SINE MIR -115 147 87 464 281 104 16 chr11 87000861 87001110 -63782443 - L1ME LINE L1 -374 5747 5477 24 32 0 0 chr11 87001637 87001668 -63781885 + AT_rich Low_complexity Low_complexity 1 31 0 292 227 19 143 chr11 87001777 87001892 -63781661 - MIR SINE MIR -16 246 153 2483 172 20 11 chr11 87001892 87002352 -63781201 - MLT1C LTR MaLR 0 467 4 292 227 19 143 chr11 87002352 87002390 -63781163 - MIR SINE MIR -109 153 112 183 225 42 99 chr11 87002816 87002887 -63780666 - MIR SINE MIR -122 86 20 1037 220 60 46 chr11 87002910 87003617 -63779936 - MER21B LTR ERV1 -113 750 13 323 354 44 17 chr11 87005480 87005661 -63777892 + L3 LINE CR1 1374 1559 -18 236 370 78 19 chr11 87005722 87005876 -63777677 - L2 LINE L2 -23 3249 3087 260 290 108 0 chr11 87006512 87006605 -63776948 + L2 LINE L2 3162 3264 -8 218 284 14 27 chr11 87007119 87007193 -63776360 + MIR SINE MIR 19 91 -171 360 358 136 8 chr11 87007556 87008109 -63775444 - L2 LINE L2 -11 3261 2221 189 320 227 0 chr11 87008882 87008979 -63774574 + L2 LINE L2 3138 3256 -16 325 329 13 34 chr11 87010330 87010479 -63773074 - MIR SINE MIR -22 240 95 681 304 118 26 chr11 87010487 87010869 -63772684 - LTR16C LTR ERVL 0 491 75 207 364 23 23 chr11 87010942 87011030 -63772523 - MIR SINE MIR -173 89 2 784 314 77 25 chr11 87011541 87012063 -63771490 + L2 LINE L2 229 777 -2537 899 212 25 117 chr11 87012108 87012476 -63771077 + MLT1A2 LTR MaLR 30 363 -11 695 326 81 37 chr11 87012506 87012988 -63770565 + L2 LINE L2 874 1376 -1938 375 278 126 21 chr11 87013039 87013230 -63770323 + L2 LINE L2 2294 2504 -810 * 496 272 0 8 chr11 87013227 87013352 -63770201 - L2 LINE L2 0 3313 3190 * 550 294 89 0 chr11 87013351 87013531 -63770022 + L2 LINE L2 2511 2706 -608 330 260 32 136 chr11 87013765 87013843 -63769710 + L2 LINE L2 3006 3091 -222 2485 71 0 3 chr11 87013843 87014153 -63769400 - AluY SINE Alu -2 309 1 330 260 32 136 chr11 87014153 87014382 -63769171 + L2 LINE L2 3091 3281 -32 1568 219 3 0 chr11 87014402 87014690 -63768863 - AluJo SINE Alu -17 295 7 315 297 63 27 chr11 87014749 87014860 -63768693 + MIR SINE MIR 30 144 -64 254 308 290 18 chr11 87014869 87015038 -63768515 + MIR SINE MIR 28 242 -20 181 286 198 0 chr11 87015586 87015677 -63767876 - MIR SINE MIR -6 256 148 355 364 42 12 chr11 87015685 87015900 -63767653 - MIR SINE MIR -11 251 30 198 159 232 14 chr11 87016033 87016102 -63767451 + MIR SINE MIR 179 262 0 319 221 0 19 chr11 87016384 87016488 -63767065 + A-rich Low_complexity Low_complexity 2 103 0 241 319 210 25 chr11 87016636 87016755 -63766798 - MIR SINE MIR -9 253 113 17974 197 31 10 chr11 87016799 87019357 -63764196 - L1PA13 LINE L1 -152 6662 4159 2739 99 5 0 chr11 87019357 87019730 -63763823 - THE1C LTR MaLR 0 375 1 17974 197 31 10 chr11 87019730 87020123 -63763430 - L1PA13 LINE L1 -2655 4159 3776 2134 136 7 3 chr11 87020123 87020433 -63763120 - AluSx SINE Alu 0 312 2 17974 197 31 10 chr11 87020433 87023953 -63759600 - L1PA13 LINE L1 -3038 3776 1 1760 229 13 5 chr11 87024768 87025161 -63758392 + MSTD LTR MaLR 1 396 0 387 299 37 15 chr11 87025209 87025343 -63758210 + MIR SINE MIR 6 142 -120 35 24 0 0 chr11 87025397 87025439 -63758114 + AT_rich Low_complexity Low_complexity 1 42 0 448 215 0 15 chr11 87025578 87025713 -63757840 + CT-rich Low_complexity Low_complexity 4 136 0 230 306 145 79 chr11 87025950 87026021 -63757532 + L2 LINE L2 2455 2520 -794 1582 213 13 10 chr11 87026021 87026321 -63757232 - AluJb SINE Alu -11 301 1 230 306 145 79 chr11 87026321 87026740 -63756813 + L2 LINE L2 2520 2977 -337 1465 180 29 4 chr11 87026962 87027234 -63756319 + L1PB4 LINE L1 5871 6149 -7 275 185 62 15 chr11 87027249 87027314 -63756239 + MIR SINE MIR 149 216 -46 181 133 0 44 chr11 87028934 87028979 -63754574 + (TTTTC)n Simple_repeat Simple_repeat 4 46 0 1621 188 48 68 chr11 87029032 87029430 -63754123 - MLT1B LTR MaLR 0 390 1 255 291 13 0 chr11 87029704 87029783 -63753770 + (CTA)n Simple_repeat Simple_repeat 2 81 0 532 253 0 22 chr11 87030434 87030708 -63752845 + CT-rich Low_complexity Low_complexity 1 267 0 223 71 48 0 chr11 87030840 87030882 -63752671 + (TA)n Simple_repeat Simple_repeat 2 45 0 548 325 10 5 chr11 87031356 87031559 -63751994 + MER63A DNA MER1_type 2 205 -5 2757 101 0 11 chr11 87032576 87032954 -63750599 + THE1C LTR MaLR 1 374 -1 252 356 96 0 chr11 87033209 87033313 -63750240 - MIR SINE MIR -147 115 2 185 211 18 0 chr11 87033896 87033953 -63749600 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 231 36 0 0 chr11 87033992 87034020 -63749533 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 262 253 48 24 chr11 87034701 87034784 -63748769 + MIR SINE MIR 2 86 -176 1411 215 100 40 chr11 87034785 87035254 -63748299 + MLT1D LTR MaLR 9 505 0 313 309 91 0 chr11 87035255 87035365 -63748188 + MIR SINE MIR 78 197 -65 199 290 0 32 chr11 87035436 87035498 -63748055 - MIR SINE MIR -118 90 31 39 38 0 0 chr11 87037202 87037255 -63746298 + AT_rich Low_complexity Low_complexity 1 53 0 25 0 0 0 chr11 87037681 87037706 -63745847 + AT_rich Low_complexity Low_complexity 1 25 0 327 275 44 0 chr11 87037827 87037918 -63745635 + MER21B LTR ERV1 1 95 -768 1521 236 50 16 chr11 87037960 87038542 -63745011 + MER21B LTR ERV1 98 752 -111 208 228 127 38 chr11 87038690 87038769 -63744784 - MIR SINE MIR -74 188 103 1507 142 4 0 chr11 87038780 87039012 -63744541 + LTR43 LTR ERV1 1 233 -369 3451 113 14 2 chr11 87039012 87039506 -63744047 + LTR3b LTR ERVK 1 500 0 2312 143 30 0 chr11 87039506 87039870 -63743683 + LTR43 LTR ERV1 228 602 0 368 184 66 0 chr11 87039937 87040013 -63743540 + Tigger1 DNA MER2_type 1 81 -2337 276 213 16 0 chr11 87040207 87040268 -63743285 + MLT1L LTR MaLR 20 81 -534 291 270 68 76 chr11 87040272 87040509 -63743044 + MLT1L LTR MaLR 217 451 -164 966 310 87 7 chr11 87040535 87040938 -63742615 + LTR16A LTR ERVL 16 450 0 2094 141 33 28 chr11 87041127 87041489 -63742064 - THE1B LTR MaLR 0 364 1 265 329 0 0 chr11 87041504 87041583 -63741970 + L2 LINE L2 3235 3313 0 328 345 93 7 chr11 87042514 87042665 -63740888 - MIR SINE MIR -64 144 28 258 105 0 0 chr11 87043690 87043728 -63739825 + (A)n Simple_repeat Simple_repeat 1 38 0 261 284 0 11 chr11 87043761 87043856 -63739697 - L2 LINE L2 -668 2646 2553 1362 245 43 14 chr11 87044609 87044960 -63738593 - MLT1A1 LTR MaLR 0 365 5 1874 122 39 14 chr11 87045058 87045344 -63738209 - AluSg SINE Alu -17 293 1 180 0 0 0 chr11 87045884 87045904 -63737649 + (T)n Simple_repeat Simple_repeat 1 20 0 249 33 0 0 chr11 87046151 87046181 -63737372 + (CA)n Simple_repeat Simple_repeat 2 31 0 185 382 116 20 chr11 87046351 87046715 -63736838 + L2 LINE L2 2315 2733 -581 2365 153 62 2 chr11 87046715 87047119 -63736434 + MSTA LTR MaLR 1 428 0 185 382 116 20 chr11 87047119 87047212 -63736341 + L2 LINE L2 2733 2816 -498 2033 286 41 34 chr11 87047587 87048822 -63734731 + L1M2b LINE L1 139 2098 -5111 703 63 0 0 chr11 87048824 87048919 -63734634 + AluY SINE Alu 214 308 -3 479 194 55 36 chr11 87048921 87049086 -63734467 + L1M2b LINE L1 2095 2262 -4947 2380 74 0 3 chr11 87049086 87049382 -63734171 + AluY SINE Alu 1 295 -16 2114 123 18 46 chr11 87049770 87050161 -63733392 + LTR3b LTR ERVK 121 500 0 2329 140 30 0 chr11 87050161 87050525 -63733028 + LTR43 LTR ERV1 228 602 0 10864 143 36 12 chr11 87050592 87050674 -63732879 + Tigger1 DNA MER2_type 1 80 -2338 1468 164 98 49 chr11 87050674 87051101 -63732452 - LTR7 LTR ERV1 -2 448 1 10864 143 36 12 chr11 87051101 87052832 -63730721 + Tigger1 DNA MER2_type 80 1858 -560 3321 164 43 0 chr11 87052969 87053572 -63729981 + Tigger1 DNA MER2_type 1789 2417 -1 24 77 0 0 chr11 87053644 87053696 -63729857 + AT_rich Low_complexity Low_complexity 1 52 0 490 325 74 10 chr11 87054099 87054302 -63729251 + MIR SINE MIR 15 230 -32 278 292 95 71 chr11 87054437 87054605 -63728948 - MIR SINE MIR -2 260 89 1077 247 107 66 chr11 87054919 87055539 -63728014 - L1MC4 LINE L1 -2 8040 7396 21 0 0 0 chr11 87055688 87055709 -63727844 + GC_rich Low_complexity Low_complexity 1 21 0 814 149 8 22 chr11 87055774 87055908 -63727645 - FLAM_C SINE Alu 0 133 2 365 261 61 9 chr11 87056309 87056424 -63727129 + MIR3 SINE MIR 83 203 -5 23 33 0 0 chr11 87056425 87056455 -63727098 + AT_rich Low_complexity Low_complexity 1 30 0 761 253 51 58 chr11 87057169 87057280 -63726273 + MIR SINE MIR 8 118 -144 2125 126 10 10 chr11 87057280 87057589 -63725964 - AluSg SINE Alu 0 310 2 761 253 51 58 chr11 87057589 87057734 -63725819 + MIR SINE MIR 118 262 0 22 35 0 0 chr11 87057941 87057970 -63725583 + AT_rich Low_complexity Low_complexity 1 29 0 270 330 21 21 chr11 87057980 87058077 -63725476 - MIR SINE MIR -145 117 21 1317 42 6 12 chr11 87058886 87059054 -63724499 + L1HS LINE L1 5980 6146 -9 202 289 9 35 chr11 87059166 87059280 -63724273 + C-rich Low_complexity Low_complexity 5 115 0 1676 127 52 10 chr11 87059485 87059776 -63723777 + AluSx SINE Alu 10 312 0 10148 225 25 17 chr11 87059779 87063201 -63720352 + L1M2 LINE L1 1907 5367 -1481 5575 170 26 11 chr11 87063304 87063568 -63719985 + L1MA5 LINE L1 4485 4744 -1556 2090 119 13 13 chr11 87063568 87063870 -63719683 + AluSx SINE Alu 1 302 -10 5575 170 26 11 chr11 87063870 87065395 -63718158 + L1MA5 LINE L1 4744 6300 0 304 225 0 45 chr11 87065400 87065489 -63718064 + GA-rich Low_complexity Low_complexity 2 86 0 186 43 0 0 chr11 87066129 87066152 -63717401 + (CAA)n Simple_repeat Simple_repeat 1 23 0 327 347 75 17 chr11 87066171 87066344 -63717209 - MIR SINE MIR -30 232 50 * 550 374 22 27 chr11 87066333 87066694 -63716859 + L2 LINE L2 2732 3096 -217 2302 104 0 0 chr11 87066808 87067107 -63716446 + AluSg SINE Alu 1 299 -11 208 191 0 0 chr11 87067233 87067275 -63716278 - MIR SINE MIR -112 150 109 189 368 13 13 chr11 87067977 87068053 -63715500 + MIR SINE MIR 62 137 -71 1716 197 0 0 chr11 87068295 87068590 -63714963 - AluJb SINE Alu -15 297 3 249 336 45 22 chr11 87068930 87069064 -63714489 - MIR SINE MIR -121 141 5 187 298 60 12 chr11 87069716 87069800 -63713753 - L2 LINE L2 -9 3263 3176 342 327 19 37 chr11 87069815 87069943 -63713610 - MIR SINE MIR -3 259 137 2607 108 8 3 chr11 87069943 87070305 -63713248 - THE1B LTR MaLR 0 364 1 342 327 19 37 chr11 87070305 87070411 -63713142 - MIR SINE MIR -125 137 31 319 350 0 0 chr11 87070461 87070564 -63712989 - MER5A DNA MER1_type -83 106 4 38 0 0 0 chr11 87070719 87070757 -63712796 + AT_rich Low_complexity Low_complexity 1 38 0 692 225 34 0 chr11 87070779 87070957 -63712596 - MER3 DNA MER1_type -25 184 1 12658 221 44 12 chr11 87071348 87074305 -63709248 + L1MA6 LINE L1 1995 5203 -2516 2457 126 3 6 chr11 87074305 87074670 -63708883 + THE1B LTR MaLR 1 364 0 12658 221 44 12 chr11 87074670 87076933 -63706620 + L1MA6 LINE L1 5203 7391 -328 1295 222 37 0 chr11 87076946 87077189 -63706364 + L1PA13 LINE L1 1 252 -6535 14017 197 24 5 chr11 87077189 87080900 -63702653 + L1PA13 LINE L1 3067 6808 -6 741 195 23 29 chr11 87080902 87081076 -63702477 + L1MA6 LINE L1 7378 7550 -169 773 268 0 6 chr11 87082747 87082930 -63700623 + MER5A DNA MER1_type 5 186 -3 338 286 153 63 chr11 87083381 87083759 -63699794 + MLT1J LTR MaLR 100 511 0 352 178 100 11 chr11 87084513 87084603 -63698950 + MER103 DNA DNA 20 117 -49 24 32 0 0 chr11 87086136 87086167 -63697386 + AT_rich Low_complexity Low_complexity 1 31 0 350 219 124 36 chr11 87086242 87086379 -63697174 - L1ME4a LINE L1 -237 5884 5736 627 294 17 0 chr11 87086727 87086907 -63696646 + MIR SINE MIR 80 262 0 240 296 112 16 chr11 87087077 87087202 -63696351 + MIR SINE MIR 69 205 -57 2324 73 3 7 chr11 87087223 87087525 -63696028 - AluY SINE Alu -10 301 1 235 264 56 64 chr11 87087629 87087754 -63695799 + L2 LINE L2 3158 3281 -32 1519 214 3 3 chr11 87087774 87088063 -63695490 - AluJo SINE Alu -17 295 7 804 245 86 62 chr11 87088484 87088814 -63694739 + MLT1A2 LTR MaLR 1 430 -37 401 168 40 50 chr11 87088889 87088990 -63694563 - MSTB LTR MaLR -316 110 11 2337 132 16 5 chr11 87089012 87089383 -63694170 + THE1C LTR MaLR 1 375 0 9262 121 71 11 chr11 87089383 87090873 -63692680 + THE1C-int LTR MaLR 1 1580 0 2335 144 5 8 chr11 87090873 87091249 -63692304 + THE1C LTR MaLR 1 375 0 406 325 48 29 chr11 87091259 87091570 -63691983 + LTR16C LTR ERVL 156 472 -19 199 379 60 0 chr11 87091615 87091731 -63691822 + L2 LINE L2 3182 3304 -9 602 302 195 29 chr11 87091785 87092205 -63691348 - L2 LINE L2 0 3313 2824 239 258 76 15 chr11 87092241 87092307 -63691246 + MSTB LTR MaLR 283 352 -74 2287 289 83 25 chr11 87092328 87093233 -63690320 - L2 LINE L2 -544 2770 1814 609 246 0 0 chr11 87093462 87093584 -63689969 - MIR SINE MIR -78 184 63 23 33 0 0 chr11 87094133 87094163 -63689390 + AT_rich Low_complexity Low_complexity 1 30 0 477 383 49 26 chr11 87094332 87094682 -63688871 + L2 LINE L2 2545 2902 -412 235 354 107 39 chr11 87094765 87095045 -63688508 + L2 LINE L2 3011 3309 -4 1901 152 21 27 chr11 87095150 87095525 -63688028 - THE1C LTR MaLR -2 373 1 244 24 24 48 chr11 87095753 87095795 -63687758 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 279 0 0 0 chr11 87095923 87095954 -63687599 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 241 274 60 24 chr11 87096468 87096552 -63687001 + L2 LINE L2 3225 3311 -2 224 339 101 0 chr11 87096543 87096652 -63686901 + MIR SINE MIR 72 191 -71 * 229 326 23 0 chr11 87096723 87096809 -63686744 - MIR SINE MIR -103 159 72 865 288 71 76 chr11 87097382 87097805 -63685748 + L2 LINE L2 2285 2705 -609 2354 231 28 27 chr11 87097844 87097894 -63685659 - MLT2B3 LTR ERVL 0 520 472 204 40 0 0 chr11 87097894 87097919 -63685634 + (CAGA)n Simple_repeat Simple_repeat 3 27 0 2354 231 28 27 chr11 87097919 87098427 -63685126 - MLT2B3 LTR ERVL -48 472 1 6423 196 53 24 chr11 87098600 87099127 -63684426 + L1MC3 LINE L1 6313 6823 -962 342 80 0 0 chr11 87099127 87099177 -63684376 + (CA)n Simple_repeat Simple_repeat 2 51 0 6423 196 53 24 chr11 87099177 87100081 -63683472 + L1MC3 LINE L1 6823 7785 0 775 168 0 7 chr11 87100228 87100365 -63683188 - FLAM_C SINE Alu -2 141 6 491 0 17 0 chr11 87100418 87100477 -63683076 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 259 327 115 69 chr11 87101072 87101626 -63681927 + L2 LINE L2 2687 3271 -1 270 136 0 0 chr11 87101693 87101737 -63681816 + (CA)n Simple_repeat Simple_repeat 1 44 0 351 0 0 0 chr11 87101907 87101946 -63681607 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 233 218 36 18 chr11 87102150 87102205 -63681348 + L3 LINE CR1 330 385 -1192 234 256 30 125 chr11 87102566 87102734 -63680819 + L2 LINE L2 3112 3263 -50 191 259 0 69 chr11 87102835 87102893 -63680660 + L2 LINE L2 3216 3269 -3 383 200 27 27 chr11 87103165 87103275 -63680278 - L1MD2 LINE L1 0 6359 6250 4614 139 55 31 chr11 87103276 87104265 -63679288 + pTR5 LTR ERV1 743 2000 -438 423 260 32 0 chr11 87104265 87104388 -63679165 + LTR30 LTR ERV1 516 642 -80 2370 86 0 0 chr11 87104388 87104715 -63678838 + pTR5 LTR ERV1 66 392 -2046 3949 189 50 33 chr11 87104715 87105569 -63677984 - L1MD1 LINE L1 -105 6137 5258 2434 76 0 0 chr11 87105569 87105872 -63677681 + AluY SINE Alu 1 303 -8 3949 189 50 33 chr11 87105872 87106171 -63677382 - L1MD1 LINE L1 -984 5258 4966 1222 213 82 0 chr11 87106180 87106471 -63677082 + L1MDa LINE L1 2001 2315 -4225 264 100 0 0 chr11 87106497 87106537 -63677016 + (TC)n Simple_repeat Simple_repeat 1 40 0 4195 249 61 28 chr11 87106589 87108428 -63675125 - L1MDa LINE L1 -4572 1968 2 610 270 0 0 chr11 87108428 87108554 -63674999 - MIR SINE MIR -110 152 27 204 219 154 136 chr11 87109254 87109423 -63674130 - MIR3 SINE MIR -5 203 32 1380 137 0 41 chr11 87109484 87109754 -63673799 - L1MA4 LINE L1 -6 6294 6036 384 297 146 32 chr11 87109879 87110098 -63673455 + MIR SINE MIR 2 245 -17 288 351 90 0 chr11 87110354 87110465 -63673088 + L2 LINE L2 3147 3267 -5 194 302 94 21 chr11 87111067 87111163 -63672390 + MIR SINE MIR 51 153 -109 197 270 32 0 chr11 87111225 87111288 -63672265 - MIR SINE MIR -68 194 130 2122 130 0 3 chr11 87111460 87111767 -63671786 - AluSg SINE Alu -4 306 1 489 247 132 17 chr11 87111771 87111945 -63671608 + MIR SINE MIR 68 261 -1 394 327 56 86 chr11 87112988 87113383 -63670170 + L2 LINE L2 2875 3257 -15 5103 35 0 0 chr11 87113388 87113992 -63669561 - L1PA3 LINE L1 0 6155 5552 3359 29 0 0 chr11 87113992 87114533 -63669020 + L1PA3 LINE L1 4987 5527 -628 475 279 193 19 chr11 87114588 87114954 -63668599 - L2 LINE L2 -186 3127 2700 233 373 42 0 chr11 87115029 87115171 -63668382 - MIR3 SINE MIR -32 176 29 264 400 44 7 chr11 87115451 87115586 -63667967 - L2 LINE L2 0 3272 3133 23 0 0 0 chr11 87115681 87115704 -63667849 + AT_rich Low_complexity Low_complexity 1 23 0 354 348 43 0 chr11 87115809 87115924 -63667629 - MIR SINE MIR -130 132 13 196 294 59 12 chr11 87115963 87116048 -63667505 - MIR SINE MIR -89 173 85 2536 274 45 38 chr11 87116739 87118825 -63664728 + L1MA9 LINE L1 183 2380 -4002 2751 68 0 0 chr11 87118825 87119178 -63664375 - L1PA6 LINE L1 -1 6153 5801 4212 57 2 2 chr11 87119178 87119807 -63663746 + L1PA6 LINE L1 5166 5794 -360 * 8889 202 37 86 chr11 87119798 87120150 -63663403 + L1MA9 LINE L1 2364 2732 -3816 862 144 6 29 chr11 87120150 87120323 -63663230 - L1PA13 LINE L1 -2 6161 5993 8889 202 37 86 chr11 87120323 87121606 -63661947 + L1MA9 LINE L1 2732 4076 -2472 360 0 0 0 chr11 87121606 87121646 -63661907 + (CA)n Simple_repeat Simple_repeat 2 41 0 8889 202 37 86 chr11 87121646 87124245 -63659308 + L1MA9 LINE L1 4076 6389 -159 527 174 0 0 chr11 87124326 87124418 -63659135 + L1MA10 LINE L1 6180 6271 -63 5023 39 0 2 chr11 87124460 87125092 -63658461 + L1PA4 LINE L1 5543 6173 0 329 354 20 0 chr11 87125150 87125249 -63658304 + LTR67 LTR ERVL 99 199 -358 232 295 0 13 chr11 87125593 87125671 -63657882 + LTR33A LTR ERVL 447 523 0 245 262 94 94 chr11 87125965 87126114 -63657439 - MIR SINE MIR -20 242 94 219 289 94 55 chr11 87126183 87126311 -63657242 + MIR3 SINE MIR 13 145 -63 434 281 54 36 chr11 87126430 87126597 -63656956 + MIR SINE MIR 93 262 0 2248 166 42 35 chr11 87127853 87128335 -63655218 - MER66B LTR ERV1 0 486 2 412 313 107 13 chr11 87128882 87129106 -63654447 - MIR SINE MIR -6 256 12 200 391 36 7 chr11 87129580 87129718 -63653835 + L2 LINE L2 2919 3060 -212 406 345 30 10 chr11 87129818 87130018 -63653535 - MIR SINE MIR -54 208 5 355 264 102 46 chr11 87130134 87130331 -63653222 + Charlie8 DNA MER1_type 77 284 -2133 25 0 0 0 chr11 87130466 87130491 -63653062 + AT_rich Low_complexity Low_complexity 1 25 0 255 326 92 0 chr11 87130594 87130692 -63652861 + MIR SINE MIR 156 262 0 272 250 15 0 chr11 87131841 87131909 -63651644 + (ATG)n Simple_repeat Simple_repeat 1 69 0 241 304 40 15 chr11 87131913 87132010 -63651543 - MIR SINE MIR -67 141 43 232 350 15 29 chr11 87133071 87133208 -63650345 - MIR SINE MIR -56 206 72 689 330 104 5 chr11 87133255 87133670 -63649883 + L2 LINE L2 2201 2656 -658 22 70 0 0 chr11 87133701 87133744 -63649809 + AT_rich Low_complexity Low_complexity 1 43 0 231 309 48 32 chr11 87134517 87134643 -63648910 - MLT1H LTR MaLR -419 130 3 1206 272 55 42 chr11 87134667 87135524 -63648029 - L1ME LINE L1 -595 5571 4675 544 302 102 61 chr11 87135566 87136083 -63647470 + L2 LINE L2 2737 3271 -1 196 208 42 83 chr11 87136181 87136253 -63647300 + MIR SINE MIR 76 144 -118 285 381 9 0 chr11 87137535 87137640 -63645913 + MIR SINE MIR 33 138 -124 420 111 0 0 chr11 87137641 87137704 -63645849 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 517 265 69 8 chr11 87137898 87138098 -63645455 + L1ME3 LINE L1 5959 6168 -2 217 203 0 27 chr11 87138885 87138959 -63644594 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 345 108 27 81 chr11 87139265 87139339 -63644214 + HsTC2 DNA Tc2 223 292 -1606 880 316 33 20 chr11 87139343 87139742 -63643811 + HsTC2 DNA Tc2 487 890 -1008 254 302 158 22 chr11 87140577 87140716 -63642837 - MIR SINE MIR -43 219 62 6150 190 54 21 chr11 87140769 87142169 -63641384 - Charlie1a DNA MER1_type -3 1452 8 235 292 106 26 chr11 87143202 87143315 -63640238 + L2 LINE L2 3139 3260 -12 265 250 11 22 chr11 87143651 87143743 -63639810 + (TA)n Simple_repeat Simple_repeat 2 92 0 364 310 169 16 chr11 87144122 87144364 -63639189 - MLT1J2 LTR MaLR -124 326 48 192 189 0 0 chr11 87144885 87144922 -63638631 + MIR SINE MIR 102 138 -124 500 276 28 56 chr11 87144999 87145186 -63638367 - MIR SINE MIR -73 189 2 1677 173 170 14 chr11 87145208 87145578 -63637975 + MSTA LTR MaLR 1 428 0 220 183 0 28 chr11 87146148 87146219 -63637334 + GA-rich Low_complexity Low_complexity 2 70 0 272 275 150 57 chr11 87147231 87147424 -63636129 - MIR SINE MIR -29 233 23 194 308 183 10 chr11 87148159 87148263 -63635290 - MIR SINE MIR -69 193 72 2283 104 48 22 chr11 87148483 87148838 -63634715 + THE1B LTR MaLR 1 364 0 1515 113 13 0 chr11 87148838 87149069 -63634484 + THE1B-int LTR MaLR 1 234 -1346 * 8889 121 3 1 chr11 87149065 87150307 -63633246 + THE1B-int LTR MaLR 336 1580 0 1924 139 50 36 chr11 87150307 87150666 -63632887 + THE1B LTR MaLR 1 364 0 194 196 107 0 chr11 87151169 87151225 -63632328 - MIR SINE MIR -76 186 125 1655 163 13 61 chr11 87151939 87152252 -63631301 + AluJo SINE Alu 6 303 -9 24 54 0 18 chr11 87152689 87152726 -63630827 + AT_rich Low_complexity Low_complexity 1 38 -17 779 114 0 0 chr11 87152726 87152849 -63630704 - L1MA8 LINE L1 -5 6286 6164 24 54 0 18 chr11 87152849 87152867 -63630686 + AT_rich Low_complexity Low_complexity 38 55 0 6025 95 31 1 chr11 87153188 87154439 -63629114 + L1PA14 LINE L1 4873 6161 0 497 319 96 32 chr11 87154444 87154789 -63628764 - LTR33 LTR ERVL -94 427 61 220 285 65 17 chr11 87154832 87154922 -63628631 + MIR SINE MIR 41 132 -76 22 56 0 0 chr11 87155239 87155275 -63628278 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 87155654 87155675 -63627878 + AT_rich Low_complexity Low_complexity 1 21 0 872 218 63 5 chr11 87155751 87155957 -63627596 - MER20 DNA MER1_type -1 218 1 385 318 127 6 chr11 87156078 87156251 -63627302 + MIR SINE MIR 51 244 -18 236 310 70 0 chr11 87157013 87157084 -63626469 - L2 LINE L2 -1 3271 3196 951 198 69 46 chr11 87158531 87158834 -63624719 + MER33 DNA MER1_type 1 310 -14 1951 96 43 25 chr11 87158917 87159235 -63624318 + AluSx SINE Alu 1 323 0 285 207 72 54 chr11 87159467 87159578 -63623975 + Charlie2 DNA MER1_type 209 321 -2541 3380 189 24 76 chr11 87159606 87160642 -63622911 + Charlie2 DNA MER1_type 1881 2862 0 228 86 0 0 chr11 87162658 87162693 -63620860 + (CA)n Simple_repeat Simple_repeat 2 36 0 356 209 47 0 chr11 87164168 87164254 -63619299 + MER105 DNA DNA 9 98 -106 1656 214 33 0 chr11 87164321 87164680 -63618873 + MER63 DNA MER1_type 691 1061 0 271 367 103 46 chr11 87164914 87165555 -63617998 + L2 LINE L2 2403 3076 -196 689 355 57 3 chr11 87165563 87165862 -63617691 + LTR16B LTR ERVL 10 324 -140 291 378 42 7 chr11 87165984 87166131 -63617422 - MIR3 SINE MIR -63 145 14 217 314 57 48 chr11 87166158 87166263 -63617290 + L3 LINE CR1 1454 1559 -18 213 39 0 0 chr11 87166569 87166595 -63616958 + (A)n Simple_repeat Simple_repeat 1 26 0 316 110 85 110 chr11 87166909 87166991 -63616562 + MADE1 DNA Mariner 1 80 0 213 120 40 20 chr11 87167091 87167141 -63616412 + (TA)n Simple_repeat Simple_repeat 2 52 0 346 303 74 62 chr11 87167182 87167344 -63616209 + L2 LINE L2 3146 3309 -4 291 345 8 17 chr11 87167514 87167633 -63615920 + L2 LINE L2 2688 2805 -509 234 182 0 36 chr11 87167998 87168053 -63615500 + L2 LINE L2 3217 3269 -3 390 311 90 0 chr11 87168502 87168624 -63614929 + MIR3 SINE MIR 7 139 -69 580 282 6 19 chr11 87168825 87168981 -63614572 + MER5A DNA MER1_type 33 186 -3 194 253 51 51 chr11 87170081 87170160 -63613393 - MIR SINE MIR -93 169 91 3341 126 38 10 chr11 87171166 87171395 -63612158 + LTR49 LTR ERV1 1 222 -373 186 103 0 0 chr11 87171395 87171424 -63612129 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3341 126 38 10 chr11 87171424 87171773 -63611780 + LTR49 LTR ERV1 222 595 0 1947 151 0 6 chr11 87171909 87172220 -63611333 + AluSx SINE Alu 1 309 -3 764 127 13 25 chr11 87172303 87172461 -63611092 + GA-rich Low_complexity Low_complexity 1 156 0 791 215 23 6 chr11 87172566 87172738 -63610815 + MER5B DNA MER1_type 1 175 -3 488 252 64 1 chr11 87173104 87173250 -63610303 + MIR SINE MIR 2 154 -62 257 309 0 0 chr11 87174096 87174180 -63609373 + CT-rich Low_complexity Low_complexity 1 84 0 181 299 73 44 chr11 87174310 87174447 -63609106 - MIR SINE MIR -63 199 59 202 205 0 0 chr11 87174857 87174896 -63608657 + (CAA)n Simple_repeat Simple_repeat 1 39 0 650 302 28 9 chr11 87175105 87175317 -63608236 - MIR SINE MIR -34 228 13 353 328 76 6 chr11 87176270 87176441 -63607112 + MIR SINE MIR 23 205 -57 330 263 30 20 chr11 87176488 87176578 -63606975 - MIR3 SINE MIR -43 165 75 435 315 42 15 chr11 87176578 87176745 -63606808 + MIR3 SINE MIR 1 167 -60 525 168 186 0 chr11 87176942 87177055 -63606498 + FRAM SINE Alu 25 158 -18 238 170 0 38 chr11 87177263 87177316 -63606237 - HsTC2 DNA Tc2 -1825 73 23 1303 180 5 5 chr11 87177318 87177529 -63606024 + AluJb SINE Alu 1 211 -101 387 0 0 0 chr11 87177632 87177675 -63605878 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 180 222 44 0 chr11 87177679 87177724 -63605829 + MIR SINE MIR 61 107 -155 281 219 110 0 chr11 87179149 87179222 -63604331 + MLT1L LTR MaLR 17 97 -518 329 299 7 87 chr11 87179863 87180016 -63603537 - MIR SINE MIR -61 147 7 436 301 36 61 chr11 87180309 87180505 -63603048 + MIR SINE MIR 24 214 -48 1664 184 3 26 chr11 87180509 87180813 -63602740 + AluJo SINE Alu 1 297 -15 375 217 25 75 chr11 87181371 87181442 -63602111 - MER81 DNA DNA 0 114 50 2155 126 3 0 chr11 87181442 87181743 -63601810 + AluSc SINE Alu 1 302 -7 375 217 25 75 chr11 87181743 87181791 -63601762 - MER81 DNA DNA -64 50 1 289 212 327 0 chr11 87182301 87182414 -63601139 - MIR SINE MIR -3 259 110 495 0 0 0 chr11 87182592 87182647 -63600906 + (CA)n Simple_repeat Simple_repeat 2 56 0 42 36 0 0 chr11 87183370 87183426 -63600127 + AT_rich Low_complexity Low_complexity 1 56 0 420 422 35 0 chr11 87183887 87184117 -63599436 - L3 LINE CR1 -4 1573 1336 180 309 15 29 chr11 87184192 87184260 -63599293 - L2 LINE L2 -15 3298 3232 2230 119 0 0 chr11 87184553 87184856 -63598697 + AluSc SINE Alu 7 309 0 1185 197 48 0 chr11 87185008 87185236 -63598317 - MLT1A1 LTR MaLR 0 365 127 1222 109 0 0 chr11 87185267 87185423 -63598130 - AluSp SINE Alu -19 294 139 388 207 61 0 chr11 87185424 87185506 -63598047 - MLT1A1 LTR MaLR -278 87 1 191 340 0 0 chr11 87185722 87185775 -63597778 - L2 LINE L2 -340 2973 2921 259 331 32 25 chr11 87186502 87186780 -63596773 + L1M4 LINE L1 4137 4416 -1730 1083 280 37 9 chr11 87187051 87187401 -63596152 + L1MEc LINE L1 136 495 -5901 1924 155 3 0 chr11 87187888 87188185 -63595368 - AluSx SINE Alu -14 298 1 235 246 16 16 chr11 87188778 87188839 -63594714 + L2 LINE L2 3184 3244 -69 387 319 44 20 chr11 87188844 87189048 -63594505 - L1MC/D LINE L1 -2147 5661 5453 204 40 0 0 chr11 87189053 87189078 -63594475 + (TG)n Simple_repeat Simple_repeat 2 26 0 24 0 0 0 chr11 87189121 87189145 -63594408 + AT_rich Low_complexity Low_complexity 1 24 0 414 311 174 22 chr11 87189277 87189547 -63594006 + MLT1L LTR MaLR 170 480 -135 264 376 0 30 chr11 87189904 87190037 -63593516 + MIR3 SINE MIR 3 131 -77 21 57 0 0 chr11 87190359 87190394 -63593159 + AT_rich Low_complexity Low_complexity 1 35 0 1793 176 0 7 chr11 87190896 87191191 -63592362 + AluJo SINE Alu 1 293 -19 344 261 126 45 chr11 87191201 87191400 -63592153 - MIR SINE MIR 0 262 48 262 287 34 80 chr11 87191657 87191808 -63591745 + MIR3 SINE MIR 46 188 -40 234 327 97 0 chr11 87191958 87192071 -63591482 - MIR SINE MIR -56 206 83 1589 192 81 181 chr11 87192201 87193169 -63590384 - LTR1B LTR ERV1 0 1020 3 304 305 51 79 chr11 87193802 87193979 -63589574 + MER5A DNA MER1_type 18 189 0 2187 88 0 3 chr11 87194202 87194485 -63589068 + AluSx SINE Alu 11 292 -20 2285 102 7 0 chr11 87195020 87195313 -63588240 + AluSg SINE Alu 1 295 -15 427 304 41 23 chr11 87196154 87196325 -63587228 + MIR SINE MIR 32 205 -57 204 67 0 0 chr11 87196956 87196986 -63586567 + (T)n Simple_repeat Simple_repeat 1 30 0 716 167 0 43 chr11 87197287 87197425 -63586128 - FLAM_C SINE Alu 0 133 2 205 339 0 0 chr11 87197460 87197516 -63586037 + L2 LINE L2 3199 3254 -59 506 187 222 30 chr11 87197516 87197714 -63585839 - L1ME LINE L1 -673 5493 5258 220 137 39 0 chr11 87197753 87197804 -63585749 + (TA)n Simple_repeat Simple_repeat 1 53 0 188 238 12 119 chr11 87197875 87197959 -63585594 - L2 LINE L2 -2 3270 3196 23 78 0 0 chr11 87198083 87198134 -63585419 + AT_rich Low_complexity Low_complexity 1 51 0 416 318 0 27 chr11 87199020 87199168 -63584385 - MER3 DNA MER1_type -65 144 1 254 325 41 32 chr11 87199537 87199660 -63583893 - L2 LINE L2 -3 3310 3187 180 279 66 16 chr11 87199695 87199756 -63583797 - MIR SINE MIR -71 191 128 6149 150 58 22 chr11 87199844 87200292 -63583261 - Tigger3b DNA MER2_type -1798 1230 800 1394 190 45 14 chr11 87200292 87200414 -63583139 + AluJo SINE Alu 1 118 -194 213 39 0 0 chr11 87200414 87200440 -63583113 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1394 190 45 14 chr11 87200440 87200606 -63582947 + AluJo SINE Alu 118 298 -14 6149 150 58 22 chr11 87200606 87201344 -63582209 - Tigger3b DNA MER2_type -2228 800 1 471 293 14 99 chr11 87201354 87201576 -63581977 - MIR SINE MIR -39 223 21 509 349 88 29 chr11 87202280 87202759 -63580794 + L2 LINE L2 2434 2940 -374 1328 226 40 7 chr11 87204728 87205025 -63578528 - MLT1A1 LTR MaLR 0 365 59 1051 138 46 178 chr11 87205034 87205360 -63578193 - Tigger2 DNA MER2_type 0 2718 2436 28 48 0 0 chr11 87205360 87205402 -63578151 + AT_rich Low_complexity Low_complexity 1 42 0 14319 150 17 30 chr11 87205409 87207856 -63575697 - Tigger2 DNA MER2_type -188 2530 115 2346 94 0 0 chr11 87207856 87208155 -63575398 - AluY SINE Alu -12 299 1 14319 150 17 30 chr11 87208155 87208268 -63575285 - Tigger2 DNA MER2_type -2603 115 2 229 45 0 159 chr11 87208271 87208315 -63575238 - MLT1A1 LTR MaLR -317 48 12 345 257 132 56 chr11 87208706 87208850 -63574703 + MIR3 SINE MIR 43 197 -11 2246 151 32 44 chr11 87209664 87210095 -63573458 + MSTB LTR MaLR 1 426 0 2127 116 0 0 chr11 87210154 87210462 -63573091 + AluSg SINE Alu 5 312 0 295 301 88 0 chr11 87210639 87210752 -63572801 + MIR SINE MIR 66 188 -74 284 380 49 13 chr11 87211759 87211983 -63571570 - MIR SINE MIR -27 235 4 282 297 59 8 chr11 87212004 87212122 -63571431 + MIR SINE MIR 84 207 -55 267 36 71 36 chr11 87212652 87212708 -63570845 + T-rich Low_complexity Low_complexity 4 61 0 1659 260 172 26 chr11 87212746 87213431 -63570122 + LTR50 LTR ERVL 2 786 -9 300 274 161 65 chr11 87213566 87213752 -63569801 - MIR SINE MIR -12 250 47 280 385 40 14 chr11 87214303 87214451 -63569102 - L2 LINE L2 -43 3229 3078 2341 92 0 13 chr11 87214758 87215073 -63568480 + AluY SINE Alu 1 311 0 2082 252 65 33 chr11 87215363 87216118 -63567435 - L1MC4a LINE L1 -4 7804 7026 2084 109 0 59 chr11 87216384 87216706 -63566847 - AluSg SINE Alu -7 303 1 312 306 116 7 chr11 87217360 87217507 -63566046 - MIR SINE MIR -92 170 8 182 303 15 30 chr11 87218429 87218495 -63565058 + L2 LINE L2 3245 3309 -4 884 301 19 0 chr11 87218789 87219005 -63564548 + MIR SINE MIR 28 247 -15 187 167 0 37 chr11 87219169 87219223 -63564330 + CT-rich Low_complexity Low_complexity 1 52 0 253 367 8 17 chr11 87219841 87219961 -63563592 + L2 LINE L2 3150 3268 -4 253 385 7 20 chr11 87220267 87220415 -63563138 + L2 LINE L2 2914 3059 -213 342 299 109 15 chr11 87220769 87220906 -63562647 - L2 LINE L2 0 3272 3123 702 371 35 17 chr11 87220962 87221501 -63562052 - L2 LINE L2 -639 2675 2127 672 312 130 39 chr11 87221507 87222249 -63561304 + L2 LINE L2 2432 3271 -42 280 387 49 7 chr11 87222276 87222418 -63561135 + MIR3 SINE MIR 1 148 -60 467 293 5 24 chr11 87222668 87222848 -63560705 - L1MEc LINE L1 -4451 3114 2956 1701 162 30 19 chr11 87222848 87223219 -63560334 + L1MA7 LINE L1 5917 6291 0 467 293 5 24 chr11 87223219 87223243 -63560310 - L1MEc LINE L1 -4609 2956 2933 240 86 0 0 chr11 87223273 87223308 -63560245 + (CAT)n Simple_repeat Simple_repeat 1 35 0 501 343 48 20 chr11 87223312 87223560 -63559993 - MIR SINE MIR -6 256 2 633 207 26 0 chr11 87224459 87224575 -63558978 - FLAM_A SINE Alu -14 119 1 1196 199 28 66 chr11 87225117 87225434 -63558119 - MLT1A2 LTR MaLR 0 374 70 208 178 111 0 chr11 87225513 87225558 -63557995 - MIR3 SINE MIR -6 202 153 630 235 123 19 chr11 87225704 87225923 -63557630 - MIR SINE MIR 0 262 20 21 0 0 0 chr11 87226070 87226091 -63557462 + AT_rich Low_complexity Low_complexity 1 21 0 217 178 27 55 chr11 87226329 87226402 -63557151 + A-rich Low_complexity Low_complexity 5 75 0 1810 184 69 3 chr11 87226457 87226804 -63556749 + MER68 LTR ERV1 6 375 -187 304 333 52 46 chr11 87226806 87226980 -63556573 - MIR SINE MIR 0 262 88 192 250 33 17 chr11 87227198 87227258 -63556295 - MIR SINE MIR -118 90 30 2910 172 62 26 chr11 87228262 87228843 -63554710 - MER6A DNA MER2_type -2 603 2 264 30 0 0 chr11 87228941 87228974 -63554579 + (T)n Simple_repeat Simple_repeat 1 33 0 2302 123 64 0 chr11 87229117 87229459 -63554094 + THE1B LTR MaLR 1 364 0 2229 110 7 0 chr11 87230311 87230620 -63552933 + AluSp SINE Alu 1 311 -2 1991 130 52 68 chr11 87230886 87231094 -63552459 - THE1B LTR MaLR -1 363 162 1897 130 3 11 chr11 87231094 87231378 -63552175 + AluSg SINE Alu 1 282 -28 1991 130 52 68 chr11 87231378 87231538 -63552015 - THE1B LTR MaLR -202 162 1 23 0 0 0 chr11 87231876 87231899 -63551654 + AT_rich Low_complexity Low_complexity 1 23 0 447 19 0 0 chr11 87232123 87232175 -63551378 + (CA)n Simple_repeat Simple_repeat 1 52 0 2626 52 0 0 chr11 87232430 87232739 -63550814 - AluY SINE Alu -2 309 1 199 330 236 9 chr11 87232766 87232872 -63550681 + L2 LINE L2 3125 3254 -18 425 315 79 43 chr11 87233164 87233397 -63550156 + MIR SINE MIR 19 261 -1 286 298 95 0 chr11 87233410 87233494 -63550059 - L2 LINE L2 -41 3231 3140 251 330 62 18 chr11 87235303 87235415 -63548138 + L2 LINE L2 3141 3257 -15 26 0 0 0 chr11 87235449 87235475 -63548078 + AT_rich Low_complexity Low_complexity 1 26 0 211 328 16 0 chr11 87235775 87235836 -63547717 - MIR SINE MIR -57 151 90 259 194 140 65 chr11 87236604 87236697 -63546856 + L2 LINE L2 3127 3226 -87 2082 263 24 27 chr11 87236967 87237590 -63545963 + MLT1E2 LTR MaLR 6 626 0 1898 149 55 0 chr11 87239424 87239713 -63543840 + AluSx SINE Alu 1 305 -7 2373 110 0 0 chr11 87240710 87241019 -63542534 + AluSq SINE Alu 1 309 -4 216 97 0 0 chr11 87241221 87241252 -63542301 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 398 272 82 14 chr11 87242446 87242593 -63540960 + MER5B DNA MER1_type 22 178 0 323 301 96 22 chr11 87242836 87242972 -63540581 + MIR SINE MIR 13 158 -104 21 36 0 0 chr11 87244256 87244284 -63539269 + AT_rich Low_complexity Low_complexity 1 28 0 348 24 0 0 chr11 87244445 87244486 -63539067 + (TG)n Simple_repeat Simple_repeat 2 42 0 1583 192 18 0 chr11 87244736 87245035 -63538518 + AluJo SINE Alu 4 307 0 329 313 102 8 chr11 87246185 87246313 -63537240 - MIR SINE MIR -64 198 59 220 306 177 8 chr11 87247288 87247412 -63536141 - L2 LINE L2 0 3313 3169 2277 96 3 0 chr11 87247546 87247847 -63535706 - AluSp SINE Alu -11 302 1 629 283 89 36 chr11 87247888 87248192 -63535361 + L2 LINE L2 2550 2869 -445 275 350 43 17 chr11 87248600 87248717 -63534836 - L2 LINE L2 -11 3302 3183 248 233 33 17 chr11 87248786 87248846 -63534707 + MIR SINE MIR 72 133 -75 2455 111 11 3 chr11 87249244 87249605 -63533948 + THE1B LTR MaLR 1 364 0 10122 118 38 7 chr11 87249605 87251137 -63532416 + THE1B-int LTR MaLR 1 1580 0 2373 129 6 6 chr11 87251137 87251500 -63532053 + THE1B LTR MaLR 1 363 -1 2246 224 36 11 chr11 87251659 87252132 -63531421 + L1PA16 LINE L1 1075 1559 -5290 940 220 0 0 chr11 87252122 87252313 -63531240 + L1PA16 LINE L1 1336 1526 -5324 * 11869 231 42 31 chr11 87252701 87254237 -63529316 + L1PA16 LINE L1 1414 2932 -3937 1209 46 0 0 chr11 87254237 87254389 -63529164 + L1PA4 LINE L1 6001 6152 -3 11869 231 42 31 chr11 87254389 87254524 -63529029 + L1PA16 LINE L1 2932 3064 -3805 180 0 0 0 chr11 87254524 87254544 -63529009 + (CAA)n Simple_repeat Simple_repeat 2 21 0 11869 231 42 31 chr11 87254544 87254750 -63528803 + L1PA16 LINE L1 3064 3266 -3603 207 0 0 0 chr11 87254750 87254773 -63528780 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 11869 231 42 31 chr11 87254773 87256530 -63527023 + L1PA16 LINE L1 3266 5003 -1866 387 0 0 0 chr11 87256530 87256573 -63526980 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 11869 231 42 31 chr11 87256573 87258146 -63525407 + L1PA16 LINE L1 5003 6855 -14 27 62 0 0 chr11 87258149 87258197 -63525356 + AT_rich Low_complexity Low_complexity 1 48 0 277 246 222 18 chr11 87258202 87258369 -63525184 - MIR SINE MIR -24 238 38 243 267 40 0 chr11 87258711 87258786 -63524767 + MER103 DNA DNA 26 103 -63 33 25 0 0 chr11 87258947 87258987 -63524566 + AT_rich Low_complexity Low_complexity 1 40 0 397 312 80 0 chr11 87259139 87259264 -63524289 + MIR SINE MIR 19 153 -109 193 361 83 0 chr11 87259368 87259440 -63524113 + MIR SINE MIR 20 97 -165 22 35 0 0 chr11 87259967 87259996 -63523557 + AT_rich Low_complexity Low_complexity 1 29 0 185 293 49 37 chr11 87261992 87262074 -63521479 - L3 LINE CR1 -4 1573 1491 538 277 75 21 chr11 87262122 87262310 -63521243 - L2 LINE L2 -7 3306 3109 222 213 21 0 chr11 87262489 87262536 -63521017 - L2 LINE L2 -4 3309 3262 277 252 131 9 chr11 87262539 87262646 -63520907 + L2 LINE L2 3194 3313 0 219 284 102 11 chr11 87262721 87262809 -63520744 - MIR SINE MIR -65 143 48 365 370 39 67 chr11 87263107 87263466 -63520087 + L2 LINE L2 2922 3270 -2 934 243 37 9 chr11 87264405 87264619 -63518934 + MIR SINE MIR 18 237 -25 6650 131 61 11 chr11 87265212 87266384 -63517169 + Tigger3b DNA MER2_type 1 1231 0 337 338 46 20 chr11 87266443 87266594 -63516959 - MIR SINE MIR -106 156 2 353 299 97 14 chr11 87266735 87266879 -63516674 - MIR SINE MIR -1 261 106 1626 234 0 19 chr11 87268033 87268404 -63515149 - MLT1A1 LTR MaLR -1 364 1 201 119 48 0 chr11 87268465 87268507 -63515046 + (TA)n Simple_repeat Simple_repeat 2 45 0 377 117 73 0 chr11 87268539 87268676 -63514877 + (TA)n Simple_repeat Simple_repeat 2 148 0 269 83 83 0 chr11 87268690 87268774 -63514779 + (TA)n Simple_repeat Simple_repeat 1 91 0 245 308 101 35 chr11 87269267 87269436 -63514117 + MIR SINE MIR 51 230 -32 504 296 127 5 chr11 87269672 87269892 -63513661 - LTR33 LTR ERVL 0 521 275 595 283 69 0 chr11 87269942 87270115 -63513438 - LTR33 LTR ERVL -336 185 1 268 307 9 61 chr11 87271188 87271302 -63512251 + L2 LINE L2 2933 3040 -232 363 331 14 14 chr11 87271315 87271460 -63512093 + MIR SINE MIR 2 146 -116 252 374 0 9 chr11 87271526 87271633 -63511920 + MLT1J LTR MaLR 204 309 -202 184 128 26 26 chr11 87271686 87271725 -63511828 - L3 LINE CR1 -411 1166 1128 6311 37 0 0 chr11 87271823 87272574 -63510979 + L1PA5 LINE L1 5400 6150 -4 294 329 0 0 chr11 87273133 87273215 -63510338 - MIR SINE MIR -32 230 149 5138 23 0 2 chr11 87274072 87274672 -63508881 + L1PA2 LINE L1 5554 6152 -3 257 382 147 0 chr11 87325533 87325635 -63457918 + L2 LINE L2 3133 3249 -23 333 301 171 10 chr11 87326077 87326276 -63457277 + MIR SINE MIR 31 261 -1 23 0 0 0 chr11 87326425 87326448 -63457105 + AT_rich Low_complexity Low_complexity 1 23 0 1052 288 114 26 chr11 87326665 87327130 -63456423 + L2 LINE L2 8 513 -2801 572 302 33 0 chr11 87327131 87327313 -63456240 - MER63A DNA MER1_type 0 210 23 548 99 0 12 chr11 87327313 87327394 -63456159 + MADE1 DNA Mariner 1 80 0 189 231 13 77 chr11 87327464 87327542 -63456011 + L2 LINE L2 633 705 -2609 2728 296 225 34 chr11 87327595 87328395 -63455158 + L2 LINE L2 693 1339 -1974 2364 118 0 0 chr11 87328395 87328708 -63454845 + AluSq SINE Alu 1 313 0 2728 296 225 34 chr11 87328708 87329496 -63454057 + L2 LINE L2 1339 1975 -1338 4352 132 12 0 chr11 87329496 87330157 -63453396 + L1PA15 LINE L1 5488 6156 -9 2728 296 225 34 chr11 87330157 87330691 -63452862 + L2 LINE L2 1975 2406 -907 384 59 0 0 chr11 87330691 87330742 -63452811 + (TG)n Simple_repeat Simple_repeat 2 52 0 2728 296 225 34 chr11 87330742 87330837 -63452716 + L2 LINE L2 2406 3313 0 182 232 107 0 chr11 87331128 87331184 -63452369 + MIR SINE MIR 102 163 -99 38 51 0 0 chr11 87331361 87331420 -63452133 + AT_rich Low_complexity Low_complexity 1 59 0 382 301 79 44 chr11 87332555 87332784 -63450769 + MIR SINE MIR 14 250 -12 896 275 13 4 chr11 87332910 87333146 -63450407 - MIR SINE MIR -3 259 22 2417 82 0 19 chr11 87333151 87333509 -63450044 - AluY SINE Alu 0 352 1 404 351 30 59 chr11 87334114 87334385 -63449168 + L2 LINE L2 3008 3270 -2 298 286 45 58 chr11 87334574 87334728 -63448825 + MIR SINE MIR 6 157 -105 691 294 54 77 chr11 87335553 87336019 -63447534 - L2 LINE L2 -1 3312 2858 543 298 11 37 chr11 87337244 87337435 -63446118 + MIR SINE MIR 2 187 -75 180 0 0 0 chr11 87338751 87338771 -63444782 + (TG)n Simple_repeat Simple_repeat 2 21 0 319 294 82 0 chr11 87338854 87338939 -63444614 - L2 LINE L2 -13 3259 3168 317 320 65 20 chr11 87339221 87339404 -63444149 - MIR SINE MIR -54 208 19 2263 90 0 0 chr11 87340011 87340299 -63443254 - AluY SINE Alu 0 311 24 6295 36 0 0 chr11 87340854 87341632 -63441921 - L1PA3 LINE L1 -3 6152 5375 291 311 58 42 chr11 87342428 87342669 -63440884 + L2 LINE L2 2098 2342 -972 539 240 20 34 chr11 87342802 87342948 -63440605 - Charlie8 DNA MER1_type -2158 259 116 184 259 103 0 chr11 87343241 87343299 -63440254 - MIR SINE MIR -6 256 193 2832 259 102 91 chr11 87343309 87344259 -63439294 - HAL1 LINE L1 -5 2502 1564 3365 150 28 71 chr11 87344259 87344979 -63438574 + LTR8 LTR ERV1 3 691 0 2832 259 102 91 chr11 87344979 87345426 -63438127 - HAL1 LINE L1 -943 1564 1123 228 256 39 13 chr11 87345426 87345504 -63438049 + MER3 DNA MER1_type 1 80 -129 188 83 0 28 chr11 87345509 87345545 -63438008 + (TTTAA)n Simple_repeat Simple_repeat 1 35 0 2832 259 102 91 chr11 87345545 87346535 -63437018 - HAL1 LINE L1 -1387 1120 4 247 302 109 58 chr11 87347553 87347828 -63435725 + L2 LINE L2 2369 2657 -657 596 216 52 21 chr11 87348031 87348190 -63435363 - MLT1A1 LTR MaLR 0 375 226 204 247 27 14 chr11 87348213 87348286 -63435267 + GA-rich Low_complexity Low_complexity 2 75 0 713 158 41 34 chr11 87348299 87348445 -63435108 - MLT1A1 LTR MaLR -213 152 6 196 304 235 9 chr11 87348632 87348747 -63434806 + L2 LINE L2 2800 2940 -374 23 33 0 0 chr11 87348872 87348902 -63434651 + AT_rich Low_complexity Low_complexity 1 30 0 204 370 110 8 chr11 87349156 87349283 -63434270 - MIR SINE MIR -119 143 4 1242 224 116 17 chr11 87349398 87349804 -63433749 - MLT1C LTR MaLR -16 451 6 4681 234 53 53 chr11 87349814 87351180 -63432373 - MLT1C-int LTR MaLR -5 1366 1 1664 216 64 16 chr11 87351180 87351616 -63431937 - MLT1C LTR MaLR 0 467 11 312 307 9 26 chr11 87352156 87352270 -63431283 - MIR3 SINE MIR -14 194 83 336 24 0 0 chr11 87352694 87352735 -63430818 + (CA)n Simple_repeat Simple_repeat 2 42 0 31 26 0 0 chr11 87352769 87352807 -63430746 + AT_rich Low_complexity Low_complexity 1 38 0 196 355 43 21 chr11 87353588 87353681 -63429872 - L2 LINE L2 -25 3247 3153 266 321 63 59 chr11 87355003 87355290 -63428263 + L2 LINE L2 2230 2517 -797 2234 122 0 0 chr11 87355440 87355744 -63427809 - AluSq SINE Alu -9 304 1 185 395 142 5 chr11 87355863 87356053 -63427500 + L2 LINE L2 2524 2739 -575 2313 272 62 34 chr11 87356146 87357830 -63425723 + L1MEc LINE L1 1831 3684 -2531 9516 239 35 47 chr11 87357832 87361806 -63421747 + L1PA12 LINE L1 1 3920 -3664 2427 85 3 0 chr11 87361806 87362112 -63421441 - AluSp SINE Alu -5 308 2 9516 239 35 47 chr11 87362112 87362484 -63421069 + L1PA12 LINE L1 3920 4295 -3289 4645 128 22 9 chr11 87362456 87363190 -63420363 + L1PA14 LINE L1 6853 7595 -4 * 312 161 97 0 chr11 87363241 87363303 -63420250 + L1MEc LINE L1 3668 3735 -2480 282 177 52 0 chr11 87363314 87363410 -63420143 + (TA)n Simple_repeat Simple_repeat 1 101 0 495 231 64 89 chr11 87363485 87363891 -63419662 + L1MEc LINE L1 899 1294 -5102 * 590 256 155 28 chr11 87363877 87364128 -63419425 + L1MEc LINE L1 3980 4298 -1917 2206 107 3 0 chr11 87364128 87364418 -63419135 + AluSc SINE Alu 1 291 -18 590 256 155 28 chr11 87364418 87364553 -63419000 + L1MEc LINE L1 4298 4415 -1800 1439 262 99 38 chr11 87364563 87365711 -63417842 + L1MEc LINE L1 4520 5737 -494 347 266 53 9 chr11 87366214 87366327 -63417226 + MLT1L LTR MaLR 150 267 -348 536 288 88 20 chr11 87366371 87366621 -63416932 + MLT1L LTR MaLR 349 615 0 292 341 159 23 chr11 87366758 87366978 -63416575 + MIR SINE MIR 13 262 0 21 0 0 0 chr11 87367137 87367158 -63416395 + AT_rich Low_complexity Low_complexity 1 21 0 382 351 13 13 chr11 87367179 87367330 -63416223 - MIR SINE MIR -96 166 16 861 108 0 0 chr11 87367452 87367563 -63415990 - FLAM_C SINE Alu -32 111 1 198 71 0 0 chr11 87368565 87368593 -63414960 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 189 0 0 0 chr11 87368857 87368878 -63414675 + (TG)n Simple_repeat Simple_repeat 2 22 0 374 335 0 37 chr11 87369592 87369753 -63413800 + MER5A DNA MER1_type 7 161 -28 388 306 105 34 chr11 87370026 87370235 -63413318 - MIR SINE MIR -26 236 13 194 59 88 0 chr11 87370315 87370349 -63413204 + T-rich Low_complexity Low_complexity 1 37 0 342 0 0 0 chr11 87370824 87370862 -63412691 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 380 255 20 0 chr11 87370956 87371054 -63412499 + LTR43 LTR ERV1 189 288 -314 475 277 110 13 chr11 87372753 87372971 -63410582 + MIR SINE MIR 19 256 -6 548 301 63 44 chr11 87373168 87373374 -63410179 - MIR SINE MIR -44 218 9 223 310 46 0 chr11 87373441 87373528 -63410025 - L2 LINE L2 -1156 2158 2068 241 352 6 44 chr11 87373558 87373717 -63409836 + MLT1L LTR MaLR 8 160 -455 186 246 110 59 chr11 87374763 87374881 -63408672 - L3 LINE CR1 -1 1576 1453 2097 117 3 3 chr11 87375126 87375424 -63408129 - AluSx SINE Alu -14 298 1 193 340 11 11 chr11 87375435 87375529 -63408024 - L3 LINE CR1 -188 1389 1296 1345 206 115 28 chr11 87375631 87375995 -63407558 + MSTD LTR MaLR 1 396 0 241 369 76 34 chr11 87376068 87376304 -63407249 - L3 LINE CR1 -431 1146 901 264 59 0 0 chr11 87376705 87376739 -63406814 + (CA)n Simple_repeat Simple_repeat 2 35 0 199 27 27 54 chr11 87378107 87378144 -63405409 + (TAAAAA)n Simple_repeat Simple_repeat 1 36 0 346 344 53 13 chr11 87378266 87378493 -63405060 + MLT1L LTR MaLR 159 394 -221 277 302 57 0 chr11 87378636 87378742 -63404811 + MLT1L LTR MaLR 503 614 -1 2302 103 0 6 chr11 87379126 87379488 -63404065 + AluSg SINE Alu 1 360 0 912 292 22 6 chr11 87379734 87380032 -63403521 - MLT1E3 LTR MaLR -79 545 201 249 304 157 0 chr11 87380068 87380170 -63403383 - MLT1E3 LTR MaLR -473 120 3 1831 154 7 7 chr11 87380336 87380635 -63402918 - MSTA LTR MaLR 0 428 130 1996 187 34 90 chr11 87380665 87381252 -63402301 - MLT2B3 LTR ERVL 0 554 1 299 338 15 23 chr11 87381256 87381389 -63402164 + MIR SINE MIR 119 250 -12 284 289 189 36 chr11 87381439 87381688 -63401865 + L2 LINE L2 2687 2973 -341 316 265 0 12 chr11 87382226 87382309 -63401244 + MIR SINE MIR 180 261 -1 843 272 18 9 chr11 87382389 87382613 -63400940 + MIR SINE MIR 30 255 -7 226 213 0 0 chr11 87382662 87382709 -63400844 + (CA)n Simple_repeat Simple_repeat 2 48 0 246 208 0 0 chr11 87383012 87383065 -63400488 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 213 121 0 0 chr11 87383541 87383574 -63399979 + (CAT)n Simple_repeat Simple_repeat 3 35 0 1280 137 4 31 chr11 87383590 87383816 -63399737 - L1PA16 LINE L1 -12 6154 5935 336 227 19 26 chr11 87384966 87385120 -63398433 + GA-rich Low_complexity Low_complexity 3 155 0 25 0 0 0 chr11 87385846 87385871 -63397682 + AT_rich Low_complexity Low_complexity 1 25 0 293 296 43 26 chr11 87386246 87386361 -63397192 + MIR SINE MIR 146 262 0 297 291 87 35 chr11 87387272 87387452 -63396101 + MIR SINE MIR 3 188 -62 2185 92 48 3 chr11 87387680 87387975 -63395578 + AluY SINE Alu 1 308 -3 4007 173 81 40 chr11 87388168 87389611 -63393942 - L1MA6 LINE L1 -13 7706 6208 2282 253 37 43 chr11 87389609 87390572 -63392981 - L1MA6 LINE L1 -4427 3138 2181 * 2884 221 21 13 chr11 87390588 87391288 -63392265 - Tigger7 DNA MER2_type 0 2587 1 2001 251 122 36 chr11 87391289 87391424 -63392129 - L1M3e LINE L1 -5016 2014 1892 2086 147 0 3 chr11 87391424 87391736 -63391817 - AluSx SINE Alu 0 312 2 2001 251 122 36 chr11 87391736 87392728 -63390825 - L1M3e LINE L1 -5138 1892 3 1980 70 0 0 chr11 87392752 87392994 -63390559 - AluY SINE Alu -69 242 1 25 51 0 0 chr11 87393162 87393201 -63390352 + AT_rich Low_complexity Low_complexity 1 39 0 230 194 125 42 chr11 87394030 87394102 -63389451 + MER5A DNA MER1_type 1 78 -111 2336 107 3 0 chr11 87394102 87394410 -63389143 + AluSg SINE Alu 1 309 -1 579 243 36 0 chr11 87394430 87394541 -63389012 + MER5A DNA MER1_type 61 175 -14 284 274 9 9 chr11 87394582 87394688 -63388865 - MSTC LTR MaLR -308 120 15 1485 245 3 30 chr11 87394696 87395064 -63388489 + MLT1A1 LTR MaLR 8 365 0 7214 219 81 6 chr11 87395064 87396677 -63386876 + MLT1A1-int LTR MaLR 1 1735 0 1544 240 30 25 chr11 87396678 87397040 -63386513 + MLT1A1 LTR MaLR 2 365 0 204 350 39 39 chr11 87397219 87397322 -63386231 + MIR SINE MIR 30 132 -76 239 314 73 0 chr11 87397503 87397627 -63385926 - MIR SINE MIR -1 261 129 294 282 0 19 chr11 87399453 87399557 -63383996 + MIR SINE MIR 5 103 -109 22 88 0 0 chr11 87399630 87399687 -63383866 + AT_rich Low_complexity Low_complexity 1 57 0 195 245 20 102 chr11 87399942 87400040 -63383513 + MIR SINE MIR 106 195 -67 839 205 56 60 chr11 87400798 87401032 -63382521 + MLT1D LTR MaLR 202 434 -71 24659 106 88 61 chr11 87401032 87407006 -63376547 + L1PA7 LINE L1 18 6152 -2 425 293 78 45 chr11 87408063 87408305 -63375248 + MIR SINE MIR 1 250 -12 1152 173 96 22 chr11 87408677 87408949 -63374604 + MER39 LTR ERV1 357 648 -59 972 157 0 0 chr11 87409099 87409246 -63374307 - AluSg/x SINE Alu -23 287 141 288 0 0 0 chr11 87409411 87409443 -63374110 + (TTA)n Simple_repeat Simple_repeat 3 34 0 319 344 37 11 chr11 87410565 87410920 -63372633 - L1ME4a LINE L1 -215 5906 5543 24 77 0 0 chr11 87412194 87412246 -63371307 + AT_rich Low_complexity Low_complexity 1 52 0 1995 149 103 0 chr11 87412887 87413275 -63370278 + MSTA LTR MaLR 1 428 0 2439 138 48 19 chr11 87413275 87413607 -63369946 + MSTA-int LTR MaLR 1 351 -1300 3214 149 39 4 chr11 87413607 87414116 -63369437 + MER1A DNA MER1_type 1 527 0 2439 138 48 19 chr11 87414116 87414246 -63369307 + MSTA-int LTR MaLR 351 476 -1175 2079 161 3 0 chr11 87414247 87414558 -63368995 + AluSx SINE Alu 1 312 0 22 0 0 0 chr11 87414572 87414594 -63368959 + AT_rich Low_complexity Low_complexity 1 22 0 506 286 70 6 chr11 87416792 87416963 -63366590 + MER5A DNA MER1_type 3 184 -5 367 338 164 28 chr11 87417048 87417590 -63365963 + L2 LINE L2 2125 2740 -574 359 222 25 12 chr11 87418852 87418933 -63364620 - MIR SINE MIR -101 161 80 269 326 157 14 chr11 87418961 87419108 -63364445 - L2 LINE L2 -1 3271 3104 189 0 0 0 chr11 87419194 87419215 -63364338 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 370 195 65 13 chr11 87419479 87419556 -63363997 - MER91B DNA MER1_type -109 81 1 * 491 338 34 19 chr11 87419556 87419761 -63363792 - MIR SINE MIR -34 228 21 443 325 115 65 chr11 87421215 87421692 -63361861 - L2 LINE L2 0 3313 2813 2867 191 35 54 chr11 87421876 87422652 -63360901 + L1PB3 LINE L1 5387 6147 -7 281 214 10 39 chr11 87422949 87422961 -63360592 + (TA)n Simple_repeat Simple_repeat 1 12 -88 2309 77 3 13 chr11 87422961 87423260 -63360293 + AluY SINE Alu 1 296 -15 281 214 10 39 chr11 87423260 87423350 -63360203 + (TA)n Simple_repeat Simple_repeat 12 100 0 28 48 0 0 chr11 87423415 87423457 -63360096 + AT_rich Low_complexity Low_complexity 1 42 0 219 345 24 12 chr11 87423630 87423714 -63359839 + MIR SINE MIR 60 144 -64 670 134 0 0 chr11 87423719 87423816 -63359737 + U6 snRNA snRNA 1 97 -10 24 77 0 0 chr11 87423816 87423868 -63359685 + AT_rich Low_complexity Low_complexity 1 52 0 439 360 139 18 chr11 87424038 87424533 -63359020 - L3 LINE CR1 -3 1574 1020 275 194 28 56 chr11 87424641 87424686 -63358867 + MIR SINE MIR 193 237 -25 3637 174 50 6 chr11 87424686 87425360 -63358193 - MER44D DNA MER2_type 0 705 2 275 194 28 56 chr11 87425360 87425386 -63358167 + MIR SINE MIR 237 262 0 432 350 48 39 chr11 87425400 87425711 -63357842 - L3 LINE CR1 -647 930 617 300 269 103 90 chr11 87426165 87426267 -63357286 - MIR3 SINE MIR -4 204 98 2352 97 0 3 chr11 87426267 87426575 -63356978 + AluY SINE Alu 1 307 -4 300 269 103 90 chr11 87426575 87426628 -63356925 - MIR3 SINE MIR -110 98 47 2579 133 80 4 chr11 87427048 87427499 -63356054 - LTR1 LTR ERV1 -8 777 293 4770 149 193 100 chr11 87427510 87429070 -63354483 - pTR5 LTR ERV1 0 2438 734 1404 109 14 9 chr11 87429157 87429377 -63354176 - LTR1 LTR ERV1 -533 252 32 401 328 39 35 chr11 87429653 87429885 -63353668 - MIR SINE MIR -10 252 20 182 186 41 134 chr11 87430415 87430512 -63353041 - L3 LINE CR1 -367 1210 1123 21 0 0 0 chr11 87431079 87431100 -63352453 + AT_rich Low_complexity Low_complexity 1 21 0 999 225 1 13 chr11 87431108 87431165 -63352388 - MIR SINE MIR -12 250 194 2148 110 0 3 chr11 87431165 87431457 -63352096 + AluSg SINE Alu 1 291 -19 999 225 1 13 chr11 87431457 87431623 -63351930 - MIR SINE MIR -68 194 30 406 291 162 0 chr11 87432431 87432579 -63350974 + MIR SINE MIR 75 246 -16 2143 128 0 7 chr11 87432590 87432895 -63350658 - AluSc SINE Alu -6 303 1 186 328 30 15 chr11 87432946 87433013 -63350540 + MIR SINE MIR 74 141 -67 22 0 0 0 chr11 87433085 87433107 -63350446 + AT_rich Low_complexity Low_complexity 1 22 0 2190 96 0 0 chr11 87434584 87434911 -63348642 + AluY SINE Alu 1 327 0 23 54 0 0 chr11 87435641 87435678 -63347875 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr11 87435845 87435876 -63347677 + AT_rich Low_complexity Low_complexity 1 31 0 252 262 0 0 chr11 87435911 87436004 -63347549 - L1ME LINE L1 -510 5658 5564 5128 162 32 16 chr11 87436013 87437357 -63346196 + L1MA4A LINE L1 4595 5967 -336 2230 123 3 0 chr11 87437357 87437665 -63345888 + AluSx SINE Alu 1 309 -3 5128 162 32 16 chr11 87437665 87438003 -63345550 + L1MA4A LINE L1 5967 6298 -5 263 308 77 0 chr11 87439153 87439231 -63344322 - MER81 DNA DNA -30 84 1 624 280 23 5 chr11 87439830 87440044 -63343509 - MER58A DNA MER1_type -6 218 1 209 315 0 0 chr11 87440609 87440663 -63342890 - MER5B DNA MER1_type 0 178 125 748 231 32 52 chr11 87440669 87440977 -63342576 + L1ME2 LINE L1 5088 5389 -757 853 332 25 14 chr11 87440996 87441360 -63342193 + L1PA16 LINE L1 243 610 -6177 1581 253 55 44 chr11 87441451 87442020 -63341533 + L1PA16 LINE L1 1330 1904 -4883 518 125 31 10 chr11 87442052 87442148 -63341405 + MER4A LTR ERV1 1 98 -566 8492 214 27 20 chr11 87442178 87444034 -63339519 + L1PA16 LINE L1 2741 4582 -2235 2070 118 3 0 chr11 87444034 87444323 -63339230 + AluSg SINE Alu 1 290 -20 8492 214 27 20 chr11 87444323 87446326 -63337227 + L1PA16 LINE L1 4582 6628 -189 1494 249 52 30 chr11 87446361 87446856 -63336697 + L1ME2 LINE L1 5649 6154 -10 207 244 0 0 chr11 87446966 87447011 -63336542 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 197 303 227 0 chr11 87447147 87447213 -63336340 + MER5B DNA MER1_type 98 178 0 24 32 0 0 chr11 87447491 87447522 -63336031 + AT_rich Low_complexity Low_complexity 1 31 0 1146 263 94 45 chr11 87447863 87448272 -63335281 + MLT2B2 LTR ERVL 1 439 -76 2207 107 0 7 chr11 87448272 87448572 -63334981 - AluSc SINE Alu -9 300 3 1146 263 94 45 chr11 87448572 87448653 -63334900 + MLT2B2 LTR ERVL 439 515 0 240 336 53 18 chr11 87448752 87448865 -63334688 + L2 LINE L2 3137 3253 -19 452 329 29 13 chr11 87448979 87449154 -63334399 - MIR SINE MIR -67 141 3 219 269 0 127 chr11 87450031 87450165 -63333388 - L2 LINE L2 -231 3041 2925 240 346 92 18 chr11 87450388 87450616 -63332937 - L2 LINE L2 -641 2673 2429 595 315 49 0 chr11 87451014 87451217 -63332336 + MIR SINE MIR 8 220 -42 285 320 72 8 chr11 87451216 87451341 -63332212 + L2 LINE L2 3177 3309 -4 * 26 50 0 0 chr11 87451717 87451757 -63331796 + AT_rich Low_complexity Low_complexity 1 40 0 688 301 61 87 chr11 87452215 87452824 -63330729 + L2 LINE L2 2715 3308 -5 236 373 101 0 chr11 87452832 87452990 -63330563 - MIR SINE MIR -75 187 14 294 366 23 8 chr11 87453188 87453319 -63330234 + MIR SINE MIR 29 161 -101 801 232 54 54 chr11 87453416 87453456 -63330097 - MER58A DNA MER1_type -2196 224 185 2091 137 0 0 chr11 87453456 87453756 -63329797 + AluSg SINE Alu 1 300 -10 801 232 54 54 chr11 87453756 87453939 -63329614 - MER58A DNA MER1_type -2234 186 1 195 266 149 21 chr11 87454667 87454761 -63328792 + L2 LINE L2 2905 3010 -262 1708 194 28 34 chr11 87454859 87455246 -63328307 + MER89 LTR ERV1 175 559 0 257 318 123 31 chr11 87456125 87456320 -63327233 + MIR SINE MIR 2 214 -48 182 424 43 0 chr11 87457092 87457184 -63326369 - L2 LINE L2 -5 3308 3213 422 286 39 44 chr11 87457374 87457556 -63325997 - L2 LINE L2 -702 2612 2432 214 340 52 10 chr11 87457567 87457664 -63325889 + L2 LINE L2 2686 2786 -528 211 242 0 16 chr11 87457903 87457965 -63325588 + T-rich Low_complexity Low_complexity 4 64 0 213 39 0 0 chr11 87458160 87458186 -63325367 + (CA)n Simple_repeat Simple_repeat 1 26 0 204 328 59 17 chr11 87458861 87458980 -63324573 + MIR SINE MIR 107 230 -32 467 342 139 42 chr11 87459630 87460569 -63322984 + L2 LINE L2 2220 3236 -36 2333 277 266 15 chr11 87460609 87461890 -63321663 + L2 LINE L2 1375 2977 -337 2422 142 37 3 chr11 87461912 87462641 -63320912 - L1PB1 LINE L1 -554 5597 4852 3773 103 0 11 chr11 87462648 87463190 -63320363 + L1PB1 LINE L1 5615 6150 -1 2671 93 3 0 chr11 87463464 87463818 -63319735 + THE1A LTR MaLR 1 355 0 950 221 146 14 chr11 87464015 87464372 -63319181 + L1M4 LINE L1 4399 4802 -1344 317 278 62 7 chr11 87464534 87464678 -63318875 + L1MA10 LINE L1 6181 6332 -2 556 267 80 73 chr11 87464698 87464986 -63318567 + L2 LINE L2 3022 3311 -2 257 303 142 0 chr11 87465214 87465369 -63318184 - L1ME4a LINE L1 -9 6112 5936 257 282 70 0 chr11 87466776 87466847 -63316706 - L2 LINE L2 0 3313 3238 469 360 53 4 chr11 87466978 87467203 -63316350 + MIR SINE MIR 11 246 -16 4690 181 17 16 chr11 87467440 87468214 -63315339 - L1MB3 LINE L1 0 6183 5411 2511 111 6 0 chr11 87468214 87468566 -63314987 - THE1A LTR MaLR 0 355 2 11144 98 15 7 chr11 87468567 87470134 -63313419 - THE1A-int LTR MaLR 0 1580 1 2401 107 8 6 chr11 87470134 87470488 -63313065 - THE1A LTR MaLR 0 355 1 4690 181 17 16 chr11 87470488 87470613 -63312940 - L1MB3 LINE L1 -771 5412 5280 203 235 59 0 chr11 87471000 87471051 -63312502 + L3 LINE CR1 1401 1454 -123 4041 236 86 62 chr11 87471921 87473732 -63309821 + L1MD1 LINE L1 3067 4921 -1225 1133 196 40 37 chr11 87473738 87474034 -63309519 + L1MD1 LINE L1 5945 6241 -1 2142 131 0 0 chr11 87474114 87474411 -63309142 - AluSc SINE Alu -12 297 1 530 307 83 55 chr11 87474459 87474607 -63308946 - MIR SINE MIR 0 262 103 1696 144 0 81 chr11 87474607 87474927 -63308626 + AluSx SINE Alu 1 294 -18 530 307 83 55 chr11 87474927 87475032 -63308521 - MIR SINE MIR -159 103 2 180 0 0 0 chr11 87476462 87476482 -63307071 + (A)n Simple_repeat Simple_repeat 1 20 0 229 276 69 23 chr11 87477190 87477277 -63306276 - MIR SINE MIR -13 249 159 623 268 80 110 chr11 87477345 87478082 -63305471 + L2 LINE L2 2559 3288 -25 190 366 131 9 chr11 87478182 87478403 -63305150 - MIR SINE MIR -1 261 14 382 291 67 62 chr11 87478465 87478675 -63304878 + LTR33 LTR ERVL 53 263 -258 261 175 0 63 chr11 87478717 87478780 -63304773 - Ricksha DNA DNA -1142 904 846 759 152 0 0 chr11 87478792 87479331 -63304222 + (TA)n Simple_repeat Simple_repeat 1 539 0 1881 222 32 34 chr11 87480183 87480625 -63302928 - MLT2B3 LTR ERVL -39 515 75 335 214 0 0 chr11 87480722 87480792 -63302761 - MLT2B3 LTR ERVL -483 71 2 637 254 40 54 chr11 87481085 87481309 -63302244 - MIR SINE MIR -10 252 32 2112 112 10 0 chr11 87481366 87481660 -63301893 + AluSp SINE Alu 1 297 -16 383 308 150 30 chr11 87482902 87483136 -63300417 - MIR SINE MIR 0 262 1 520 345 64 0 chr11 87483357 87483560 -63299993 + MIR SINE MIR 47 262 0 197 343 38 9 chr11 87483590 87483695 -63299858 - MIR SINE MIR -74 188 81 669 302 49 29 chr11 87485181 87485591 -63297962 + L1ME3A LINE L1 5479 5896 -274 565 212 0 0 chr11 87485684 87485816 -63297737 + L1PB4 LINE L1 3355 3486 -2660 * 4227 202 34 19 chr11 87485808 87487221 -63296332 + L1PB4 LINE L1 4729 6154 -2 232 123 15 15 chr11 87487504 87487569 -63295984 + (TA)n Simple_repeat Simple_repeat 1 65 0 2147 90 11 4 chr11 87487569 87487848 -63295705 - AluSg SINE Alu -24 286 6 26 0 0 0 chr11 87487854 87487880 -63295673 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr11 87487950 87487971 -63295582 + AT_rich Low_complexity Low_complexity 1 21 0 649 309 28 14 chr11 87489356 87489573 -63293980 - MIR SINE MIR -3 259 40 5361 55 12 0 chr11 87491096 87491772 -63291781 + L1PA7 LINE L1 5464 6147 -7 1869 146 7 4 chr11 87492388 87492669 -63290884 - AluJb SINE Alu -30 282 1 1023 170 13 74 chr11 87492762 87492991 -63290562 + MER20 DNA MER1_type 1 215 -4 420 76 15 0 chr11 87493698 87493764 -63289789 + Alu SINE Alu 242 308 -3 1198 140 6 0 chr11 87493764 87493935 -63289618 + AluSg/x SINE Alu 127 298 -12 250 228 0 0 chr11 87493935 87493992 -63289561 - MLT1L LTR MaLR -14 601 545 639 273 55 42 chr11 87494170 87494500 -63289053 + L1MEc LINE L1 246 579 -5817 1203 201 52 39 chr11 87494841 87495484 -63288069 - L1P5 LINE L1 -628 5528 4888 188 238 38 76 chr11 87496947 87497052 -63286501 - MIR SINE MIR 0 262 162 195 278 133 11 chr11 87497994 87498084 -63285469 + MIR SINE MIR 44 144 -64 1167 276 25 79 chr11 87498381 87498823 -63284730 + MLT1H LTR MaLR 7 424 -125 2186 90 11 0 chr11 87499130 87499408 -63284145 - AluSg SINE Alu -29 281 1 287 254 106 63 chr11 87500482 87500671 -63282882 - L2 LINE L2 0 3313 3117 188 232 125 0 chr11 87500688 87500744 -63282809 + L2 LINE L2 3206 3268 -45 * 606 272 30 68 chr11 87500726 87500853 -63282700 - MIR SINE MIR -30 232 113 2312 95 0 0 chr11 87500853 87501187 -63282366 + AluSg SINE Alu 1 334 0 606 272 30 68 chr11 87501187 87501291 -63282262 - MIR SINE MIR -149 113 7 250 357 0 24 chr11 87501465 87501591 -63281962 + MIR SINE MIR 3 125 -137 207 330 11 33 chr11 87501689 87501780 -63281773 + L2 LINE L2 3224 3312 -1 498 282 44 68 chr11 87501999 87502205 -63281348 - MER46C DNA MER2_type -9 329 129 181 405 117 9 chr11 87502776 87502887 -63280666 - MIR SINE MIR -132 130 8 270 331 152 57 chr11 87504019 87504354 -63279199 + L2 LINE L2 2897 3263 -9 2101 125 0 10 chr11 87505077 87505380 -63278173 - AluSc SINE Alu -9 300 1 272 156 0 89 chr11 87505729 87505809 -63277744 - MIR SINE MIR -94 114 58 182 176 0 0 chr11 87505923 87505957 -63277596 - L2 LINE L2 -25 3247 3214 297 319 43 17 chr11 87506164 87506280 -63277273 - MIR SINE MIR -30 232 114 200 311 53 38 chr11 87506275 87506407 -63277146 - L2 LINE L2 -1005 2309 2176 * 256 267 105 0 chr11 87506470 87506556 -63276997 - MER53 DNA DNA -94 95 1 2126 126 51 8 chr11 87507057 87507413 -63276140 - THE1C LTR MaLR 0 375 5 491 358 21 25 chr11 87508341 87508584 -63274969 - MIR SINE MIR -1 261 20 222 143 24 0 chr11 87508602 87508644 -63274909 + (CATA)n Simple_repeat Simple_repeat 2 44 0 22 80 0 0 chr11 87508912 87508962 -63274591 + AT_rich Low_complexity Low_complexity 1 50 0 249 108 0 0 chr11 87509521 87509558 -63273995 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 903 105 17 28 chr11 87509584 87509765 -63273788 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1167 196 0 10 chr11 87509806 87510010 -63273543 - AluJo SINE Alu -106 206 5 335 273 40 0 chr11 87510012 87510111 -63273442 + MIR SINE MIR 90 192 -70 398 324 110 9 chr11 87510550 87510769 -63272784 - MIR SINE MIR -1 261 21 258 136 0 0 chr11 87511787 87511831 -63271722 + (TCCCC)n Simple_repeat Simple_repeat 2 45 0 263 222 48 0 chr11 87511835 87511898 -63271655 + CT-rich Low_complexity Low_complexity 5 70 0 407 254 109 7 chr11 87512066 87512204 -63271349 + MIR SINE MIR 48 199 -63 261 310 187 13 chr11 87512280 87512435 -63271118 - MIR SINE MIR -80 182 1 273 323 71 45 chr11 87512989 87513144 -63270409 + L2 LINE L2 2636 2794 -520 358 397 55 40 chr11 87513235 87513615 -63269938 + L2 LINE L2 2887 3272 0 254 385 10 0 chr11 87513655 87513751 -63269802 - L2 LINE L2 -19 3253 3157 2198 92 0 39 chr11 87513980 87514285 -63269268 + AluSg1 SINE Alu 1 293 -16 345 214 29 0 chr11 87514285 87514355 -63269198 + L1ME3A LINE L1 6045 6116 -54 192 125 0 0 chr11 87514800 87514832 -63268721 + (TTTTC)n Simple_repeat Simple_repeat 5 36 0 254 303 9 28 chr11 87515162 87515271 -63268282 + A-rich Low_complexity Low_complexity 4 110 0 349 318 24 0 chr11 87515340 87515466 -63268087 + MIR SINE MIR 49 177 -85 1414 174 103 0 chr11 87515483 87515764 -63267789 + AluSx SINE Alu 1 310 -2 306 298 13 93 chr11 87516408 87516559 -63266994 + MER5B DNA MER1_type 10 148 -30 207 209 0 0 chr11 87516769 87516812 -63266741 + T-rich Low_complexity Low_complexity 1 43 0 1987 167 45 3 chr11 87516813 87517191 -63266362 - L1PA15 LINE L1 -1 6164 5771 193 194 0 0 chr11 87517243 87517279 -63266274 + MER5B DNA MER1_type 141 176 -2 252 357 121 1 chr11 87517285 87517406 -63266147 - MIR3 SINE MIR -52 156 23 220 296 68 57 chr11 87517566 87517742 -63265811 + MIR SINE MIR 41 218 -44 273 311 51 64 chr11 87518172 87518380 -63265173 + MIR SINE MIR 55 261 -1 700 246 170 18 chr11 87519019 87519243 -63264310 + MIR SINE MIR 5 262 0 2981 174 26 64 chr11 87519262 87519793 -63263760 - L1MA7 LINE L1 -2 6289 5788 2291 109 0 10 chr11 87519793 87520106 -63263447 - AluSg SINE Alu 0 310 1 2981 174 26 64 chr11 87520106 87520260 -63263293 - L1MA7 LINE L1 -503 5788 5630 1197 155 57 4 chr11 87520259 87520504 -63263049 + L1 LINE L1 5101 5358 -788 * 429 291 131 37 chr11 87522504 87522772 -63260781 + MER102b DNA MER1_type 48 340 -1 207 376 121 7 chr11 87522848 87522997 -63260556 + MIR SINE MIR 76 241 -21 297 262 172 0 chr11 87524228 87524350 -63259203 + MIR3 SINE MIR 39 181 -27 251 347 0 0 chr11 87524543 87524641 -63258912 + (TCCA)n Simple_repeat Simple_repeat 1 98 0 231 61 0 0 chr11 87525043 87525076 -63258477 + (TC)n Simple_repeat Simple_repeat 1 33 0 369 271 156 0 chr11 87525163 87525285 -63258268 - MIR SINE MIR -41 221 81 214 271 25 12 chr11 87525701 87525827 -63257726 - MIR SINE MIR -65 197 35 398 287 159 20 chr11 87526015 87526210 -63257343 - MIR SINE MIR -7 255 34 216 0 0 0 chr11 87526368 87526392 -63257161 + (T)n Simple_repeat Simple_repeat 1 24 0 501 217 6 60 chr11 87526404 87526570 -63256983 + MER106A DNA MER1_type 66 222 -14 319 342 44 18 chr11 87526854 87526968 -63256585 - L2 LINE L2 -7 3265 3149 204 391 0 0 chr11 87527371 87527435 -63256118 - L2 LINE L2 -8 3264 3201 221 0 35 0 chr11 87527509 87527538 -63256015 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 381 197 91 45 chr11 87528240 87528372 -63255181 - L1ME4a LINE L1 -22 6099 5962 362 370 24 52 chr11 87528648 87528897 -63254656 - L2 LINE L2 -4 3268 3027 227 319 43 11 chr11 87529166 87529260 -63254293 - L1ME LINE L1 -461 5660 5564 296 377 42 34 chr11 87529324 87529563 -63253990 - MIR SINE MIR 0 262 22 230 344 169 0 chr11 87530290 87530444 -63253109 + MIR SINE MIR 11 190 -72 40 37 0 0 chr11 87530501 87530555 -63252998 + AT_rich Low_complexity Low_complexity 1 54 0 197 299 97 52 chr11 87530693 87530827 -63252726 + MIR SINE MIR 47 186 -76 874 261 62 0 chr11 87531967 87532178 -63251375 + MER58A DNA MER1_type 1 224 0 359 314 14 43 chr11 87532636 87532776 -63250777 + L2 LINE L2 3137 3272 0 453 294 72 82 chr11 87532890 87533291 -63250262 + MLT1J LTR MaLR 110 506 -5 2063 121 0 0 chr11 87533377 87533658 -63249895 + AluSq SINE Alu 1 281 -32 298 346 69 15 chr11 87533737 87533939 -63249614 - MIR SINE MIR -27 235 23 212 57 0 29 chr11 87533943 87533978 -63249575 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 234 290 0 0 chr11 87534041 87534134 -63249419 - L1 LINE L1 -2352 3794 3702 1497 198 32 37 chr11 87534541 87534915 -63248638 + MLT1A2 LTR MaLR 1 372 -2 284 379 25 6 chr11 87535674 87535835 -63247718 - MIR SINE MIR -98 164 1 710 317 10 0 chr11 87536278 87536483 -63247070 + MIR SINE MIR 37 243 -19 2009 129 7 3 chr11 87536514 87536809 -63246744 - AluSg SINE Alu -14 296 1 313 237 21 32 chr11 87537688 87537781 -63245772 + L2 LINE L2 3203 3294 -19 240 358 169 61 chr11 87538065 87538456 -63245097 + L2 LINE L2 2824 3256 -16 304 348 7 15 chr11 87538501 87538638 -63244915 - MIR3 SINE MIR -69 139 14 2387 78 0 23 chr11 87538703 87539010 -63244543 - AluY SINE Alu -11 300 1 461 317 81 23 chr11 87539218 87539439 -63244114 - MIR SINE MIR -21 241 8 993 286 94 27 chr11 87540380 87540782 -63242771 - LTR16A LTR ERVL -6 444 16 201 175 0 0 chr11 87540965 87541005 -63242548 + GA-rich Low_complexity Low_complexity 5 44 0 2011 146 7 3 chr11 87541877 87542185 -63241368 + AluSc SINE Alu 1 309 0 209 194 20 20 chr11 87542314 87542412 -63241141 + (TA)n Simple_repeat Simple_repeat 1 98 0 378 299 7 7 chr11 87542650 87542804 -63240749 + L1ME3A LINE L1 5773 5926 -244 22 0 0 0 chr11 87542807 87542829 -63240724 + AT_rich Low_complexity Low_complexity 1 22 0 378 388 12 0 chr11 87543379 87543539 -63240014 - L3 LINE CR1 -23 1554 1393 250 259 46 3 chr11 87543573 87543654 -63239899 + MIR SINE MIR 47 140 -68 192 314 97 57 chr11 87543729 87543853 -63239700 - L3 LINE CR1 -286 1291 1163 1984 110 29 0 chr11 87543907 87544180 -63239373 + AluSc SINE Alu 1 281 -28 342 0 0 0 chr11 87544194 87544232 -63239321 + (CAT)n Simple_repeat Simple_repeat 2 39 0 2242 105 0 10 chr11 87544269 87544583 -63238970 - AluY SINE Alu 0 311 1 417 261 75 37 chr11 87544784 87544972 -63238581 + MIR SINE MIR 68 262 0 214 255 21 0 chr11 87545806 87545900 -63237653 + (TA)n Simple_repeat Simple_repeat 1 96 0 289 265 163 30 chr11 87545900 87546066 -63237487 - MIR SINE MIR -56 206 19 2408 143 36 17 chr11 87546593 87547013 -63236540 + MSTC LTR MaLR 1 428 0 689 242 70 48 chr11 87547718 87547904 -63235649 - MER20 DNA MER1_type -14 205 16 212 276 131 35 chr11 87547983 87548128 -63235425 - MIR SINE MIR -6 256 98 462 295 32 13 chr11 87548873 87549029 -63234524 + MIR SINE MIR 94 252 -10 330 243 0 0 chr11 87549790 87549860 -63233693 - L2 LINE L2 0 3272 3203 2312 80 3 0 chr11 87549900 87550187 -63233366 + AluSg SINE Alu 4 291 -19 2218 110 13 0 chr11 87550344 87550653 -63232900 - AluSq SINE Alu 0 313 1 186 360 11 0 chr11 87551701 87551790 -63231763 - MIR SINE MIR -120 142 53 330 348 19 19 chr11 87552794 87552949 -63230604 + MIR SINE MIR 98 252 -10 457 298 141 10 chr11 87553533 87553731 -63229822 - MIR SINE MIR -19 243 20 24 0 0 0 chr11 87554048 87554072 -63229481 + AT_rich Low_complexity Low_complexity 1 24 0 1971 179 90 37 chr11 87556567 87557032 -63226521 - LTR2B LTR ERV1 0 490 1 737 222 142 0 chr11 87557048 87557273 -63226280 - MIR SINE MIR -2 260 4 497 331 55 35 chr11 87557552 87557806 -63225747 + MIR SINE MIR 2 260 -2 2211 92 3 0 chr11 87557874 87558158 -63225395 + AluSp SINE Alu 21 305 -8 325 307 127 25 chr11 87558755 87558909 -63224644 + L2 LINE L2 2678 2868 -446 1998 152 0 13 chr11 87558909 87559225 -63224328 - AluSx SINE Alu 0 312 1 325 307 127 25 chr11 87559225 87559314 -63224239 + L2 LINE L2 2868 2946 -368 206 324 28 14 chr11 87559658 87559729 -63223824 - MIR SINE MIR -157 105 34 25 0 0 0 chr11 87560383 87560408 -63223145 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr11 87560543 87560563 -63222990 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1697 138 29 0 chr11 87560580 87560826 -63222727 - AluSx SINE Alu -58 254 2 208 0 0 59 chr11 87562048 87562082 -63221471 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 350 193 0 0 chr11 87562212 87562269 -63221284 + MER1B DNA MER1_type 46 102 -235 237 382 99 32 chr11 87562726 87563010 -63220543 - L2 LINE L2 -1 3271 2959 1977 117 31 3 chr11 87563010 87563300 -63220253 + AluSc SINE Alu 1 298 -11 237 382 99 32 chr11 87563300 87563358 -63220195 - L2 LINE L2 -313 2959 2906 451 256 50 50 chr11 87563482 87563662 -63219891 + MER5B DNA MER1_type 9 177 -1 201 380 13 0 chr11 87563803 87563882 -63219671 - MIR SINE MIR -113 95 16 242 373 53 27 chr11 87564077 87564227 -63219326 + L2 LINE L2 3119 3272 0 1524 216 27 40 chr11 87565046 87565417 -63218136 - MLT1A2 LTR MaLR 0 374 9 2112 121 14 0 chr11 87565725 87566015 -63217538 + MER1B DNA MER1_type 46 339 0 2257 109 0 0 chr11 87566223 87566517 -63217036 - AluSg1 SINE Alu -10 299 6 212 346 135 21 chr11 87566646 87567030 -63216523 - L2 LINE L2 -438 2876 2449 182 223 136 78 chr11 87567640 87567743 -63215810 + MIR3 SINE MIR 50 158 -50 376 332 70 9 chr11 87568376 87568604 -63214949 + MIR SINE MIR 11 249 -13 1324 256 55 14 chr11 87568757 87569016 -63214537 - MLT1C LTR MaLR -8 459 173 408 88 0 0 chr11 87569016 87569073 -63214480 + (TATG)n Simple_repeat Simple_repeat 4 60 0 1324 256 55 14 chr11 87569073 87569247 -63214306 - MLT1C LTR MaLR -294 173 8 1412 113 226 4 chr11 87570321 87570569 -63212984 - AluSq SINE Alu 0 303 1 228 264 88 0 chr11 87571166 87571257 -63212296 + MIR SINE MIR 94 192 -70 332 341 74 0 chr11 87571308 87571443 -63212110 + MIR SINE MIR 71 215 -47 303 71 0 0 chr11 87572615 87572657 -63210896 + (ATTG)n Simple_repeat Simple_repeat 2 43 0 6553 154 22 13 chr11 87573710 87575911 -63207642 - L1MA4 LINE L1 -1 6299 4082 1512 196 105 41 chr11 87575938 87576278 -63207275 - MLT1D LTR MaLR -59 446 73 186 71 0 0 chr11 87576278 87576306 -63207247 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1512 196 105 41 chr11 87576306 87576384 -63207169 - MLT1D LTR MaLR -432 73 1 205 182 0 0 chr11 87576976 87577009 -63206544 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 2775 228 50 12 chr11 87577012 87577867 -63205686 - L1MB7 LINE L1 -16 6168 5281 2059 140 3 0 chr11 87578009 87578301 -63205252 - AluSx SINE Alu -19 293 1 677 261 163 0 chr11 87579017 87579220 -63204333 + MIR SINE MIR 2 237 -25 550 353 25 20 chr11 87580667 87580911 -63202642 + MIR SINE MIR 3 247 -15 2175 210 74 6 chr11 87581177 87581649 -63201904 + MLT1D LTR MaLR 1 504 -1 455 331 98 50 chr11 87582387 87582786 -63200767 + L2 LINE L2 2889 3306 -7 398 342 47 26 chr11 87582849 87583039 -63200514 + MIR SINE MIR 69 262 0 1472 203 108 8 chr11 87583322 87583682 -63199871 - MSTD LTR MaLR 0 396 1 21 0 0 0 chr11 87584021 87584042 -63199511 + AT_rich Low_complexity Low_complexity 1 21 0 213 328 18 148 chr11 87584196 87584596 -63198957 + L3 LINE CR1 1001 1348 -229 314 372 33 0 chr11 87585025 87585146 -63198407 + L2 LINE L2 3137 3261 -11 396 294 122 25 chr11 87585302 87585511 -63198042 - MIR SINE MIR 0 262 27 305 229 90 3 chr11 87585542 87585667 -63197886 - L1MD3 LINE L1 -2 8040 7883 197 132 26 0 chr11 87585672 87585710 -63197843 + CT-rich Low_complexity Low_complexity 2 40 0 227 254 18 0 chr11 87585726 87585781 -63197772 + (TA)n Simple_repeat Simple_repeat 1 56 0 219 327 132 41 chr11 87585825 87586045 -63197508 + L2 LINE L2 2736 2975 -339 969 87 0 2 chr11 87586166 87586186 -63197367 + L1P3 LINE L1 5459 5478 -694 4261 56 4 0 chr11 87586186 87586719 -63196834 - L1PA8 LINE L1 -3 6169 5635 969 87 0 2 chr11 87586719 87586840 -63196713 + L1P3 LINE L1 5478 5598 -574 285 75 0 0 chr11 87586842 87586882 -63196671 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2045 115 66 0 chr11 87586889 87587175 -63196378 + AluSc SINE Alu 1 305 -4 454 248 18 9 chr11 87587192 87587301 -63196252 + L2 LINE L2 3199 3308 -5 33 66 0 0 chr11 87587811 87587872 -63195681 + AT_rich Low_complexity Low_complexity 1 61 0 185 296 125 0 chr11 87588144 87588232 -63195321 + MIR SINE MIR 46 144 -64 23 0 0 0 chr11 87588391 87588414 -63195139 + AT_rich Low_complexity Low_complexity 1 23 0 209 321 185 26 chr11 87588498 87588806 -63194747 + L2 LINE L2 2322 2678 -636 3890 204 67 10 chr11 87589244 87589989 -63193564 + MER21B LTR ERV1 2 798 -65 183 42 0 0 chr11 87589989 87590013 -63193540 + (CA)n Simple_repeat Simple_repeat 2 25 0 3890 204 67 10 chr11 87590013 87590076 -63193477 + MER21B LTR ERV1 798 856 -7 519 213 28 9 chr11 87590244 87590352 -63193201 + MLT1J2 LTR MaLR 1 110 -340 647 284 39 20 chr11 87590363 87590567 -63192986 + MLT1J2 LTR MaLR 243 450 0 297 356 56 0 chr11 87590602 87590692 -63192861 + L2 LINE L2 3142 3236 -36 376 282 201 6 chr11 87590860 87591034 -63192519 + MIR SINE MIR 21 228 -34 240 278 24 83 chr11 87592571 87592740 -63190813 + HAL1 LINE L1 2253 2411 -96 31 58 0 0 chr11 87592748 87592800 -63190753 + AT_rich Low_complexity Low_complexity 1 52 0 212 196 0 54 chr11 87593990 87594046 -63189507 - MIR SINE MIR -7 255 203 699 332 28 20 chr11 87594254 87594504 -63189049 + MIR SINE MIR 3 254 -8 379 361 48 22 chr11 87595935 87596162 -63187391 - MIR SINE MIR -26 236 4 219 204 0 0 chr11 87596272 87596316 -63187237 + L2 LINE L2 3263 3306 -7 254 380 28 24 chr11 87596855 87597068 -63186485 - MIR SINE MIR -29 233 20 651 279 24 53 chr11 87598411 87598751 -63184802 - L1ME3A LINE L1 -230 5940 5611 511 276 120 0 chr11 87598861 87599078 -63184475 - L1ME3A LINE L1 -556 5606 5364 2220 104 3 3 chr11 87599757 87600054 -63183499 - AluSc SINE Alu -12 297 1 483 59 15 0 chr11 87600205 87600273 -63183280 + MER41B LTR ERV1 479 547 -88 1847 136 13 28 chr11 87600301 87600618 -63182935 + AluSq SINE Alu 1 312 -1 306 254 0 0 chr11 87600729 87600792 -63182761 - L2 LINE L2 -1 3271 3209 747 215 15 55 chr11 87600996 87601196 -63182357 - MER20 DNA MER1_type -27 192 1 4965 116 35 9 chr11 87601503 87602263 -63181290 - LTR17 LTR ERV1 0 780 1 199 237 0 0 chr11 87602294 87602332 -63181221 + MIR SINE MIR 111 148 -60 1793 111 123 8 chr11 87602334 87602693 -63180860 + LTR7 LTR ERV1 1 450 0 289 245 252 13 chr11 87602756 87602915 -63180638 + L2 LINE L2 3115 3311 -2 213 94 0 0 chr11 87602955 87602987 -63180566 + (TC)n Simple_repeat Simple_repeat 2 33 0 192 172 0 121 chr11 87603121 87603179 -63180374 + L3 LINE CR1 1326 1376 -201 248 236 56 14 chr11 87603214 87603286 -63180267 + MIR SINE MIR 119 193 -69 465 296 53 16 chr11 87603690 87603879 -63179674 + MIR SINE MIR 21 216 -46 1591 197 36 25 chr11 87603922 87604283 -63179270 - MLT1A1 LTR MaLR 0 365 1 1395 242 45 36 chr11 87604963 87605405 -63178148 + MLT1C LTR MaLR 6 451 -16 1406 205 13 89 chr11 87605917 87606312 -63177241 + MLT1A1 LTR MaLR 1 365 0 229 195 0 0 chr11 87606316 87606357 -63177196 + MIR3 SINE MIR 115 155 -53 348 94 0 0 chr11 87606822 87606875 -63176678 + (CA)n Simple_repeat Simple_repeat 2 54 0 388 302 54 40 chr11 87606884 87607106 -63176447 + MIR SINE MIR 26 250 -12 9913 219 10 2 chr11 87607128 87610317 -63173236 + L1PA15 LINE L1 2949 6165 0 2010 149 13 19 chr11 87610908 87611207 -63172346 + THE1B LTR MaLR 1 291 -84 2109 122 0 16 chr11 87611207 87611511 -63172042 - AluSq SINE Alu -10 303 5 2010 149 13 19 chr11 87611511 87611596 -63171957 + THE1B LTR MaLR 291 375 0 267 266 26 71 chr11 87611651 87611764 -63171789 + MIR SINE MIR 145 252 -10 24 0 0 0 chr11 87612801 87612825 -63170728 + AT_rich Low_complexity Low_complexity 1 24 0 203 330 55 28 chr11 87613080 87613189 -63170364 + MIR SINE MIR 30 141 -67 263 202 11 0 chr11 87613424 87613518 -63170035 + (TA)n Simple_repeat Simple_repeat 2 96 0 451 315 19 12 chr11 87613985 87614147 -63169406 - MER117 DNA MER1_type -17 180 18 24 32 0 0 chr11 87614264 87614295 -63169258 + AT_rich Low_complexity Low_complexity 1 31 0 2325 111 3 0 chr11 87616452 87616776 -63166777 - L1P4 LINE L1 -398 5765 5441 1739 91 44 33 chr11 87616772 87617047 -63166506 + L1PA13 LINE L1 5868 6145 -18 * 263 183 17 0 chr11 87617316 87617376 -63166177 + (CA)n Simple_repeat Simple_repeat 2 62 0 374 350 47 23 chr11 87617400 87617614 -63165939 + MIR SINE MIR 25 243 -19 255 336 128 8 chr11 87619389 87619514 -63164039 - MIR3 SINE MIR -9 199 60 950 206 40 6 chr11 87619931 87620206 -63163347 + MER2 DNA MER2_type 1 344 -1 276 298 75 0 chr11 87621321 87621415 -63162138 + L2 LINE L2 3169 3269 -3 1495 112 40 9 chr11 87621494 87621717 -63161836 - MER30 DNA MER1_type 0 230 1 191 32 65 0 chr11 87621967 87621998 -63161555 + T-rich Low_complexity Low_complexity 2 34 0 2295 65 4 0 chr11 87623181 87623478 -63160075 - AluSc SINE Alu 0 298 1 380 309 66 33 chr11 87623491 87623672 -63159881 - MIR SINE MIR 0 262 76 193 362 0 0 chr11 87623733 87623791 -63159762 - L3 LINE CR1 -90 1487 1430 2282 55 0 4 chr11 87623965 87624267 -63159286 + AluY SINE Alu 8 308 0 249 294 33 33 chr11 87624447 87624539 -63159014 - L3 LINE CR1 -10 1567 1476 250 86 0 0 chr11 87624549 87624584 -63158969 + MADE1 DNA Mariner 46 80 0 1452 255 51 7 chr11 87625682 87626094 -63157459 + MER57B LTR ERV1 1 430 -4 864 248 51 100 chr11 87626129 87626577 -63156976 - MLT1J1 LTR MaLR 0 446 21 354 45 0 0 chr11 87626691 87626735 -63156818 + (TG)n Simple_repeat Simple_repeat 2 45 0 240 296 167 30 chr11 87626786 87626918 -63156635 + MIR SINE MIR 4 153 -109 1664 254 42 23 chr11 87627094 87627621 -63155932 - L1ME1 LINE L1 -5 6161 5625 265 272 71 71 chr11 87627868 87628089 -63155464 - MIR SINE MIR -14 248 30 278 258 190 37 chr11 87629092 87629255 -63154298 + MIR SINE MIR 3 190 -72 254 288 127 68 chr11 87629953 87630071 -63153482 - L2 LINE L2 -5 3267 3143 274 238 25 49 chr11 87630435 87630557 -63152996 + GA-rich Low_complexity Low_complexity 3 121 0 204 250 0 0 chr11 87630764 87630812 -63152741 + A-rich Low_complexity Low_complexity 2 49 0 465 351 67 4 chr11 87631171 87631410 -63152143 + MIR SINE MIR 3 256 -6 553 225 162 18 chr11 87631749 87631949 -63151604 - MLT1E2 LTR MaLR -289 365 122 22 0 0 0 chr11 87632232 87632254 -63151299 + AT_rich Low_complexity Low_complexity 1 22 0 382 266 11 0 chr11 87632413 87632507 -63151046 + MER5A DNA MER1_type 12 106 -83 309 332 42 76 chr11 87632642 87632754 -63150799 - MIR SINE MIR -10 252 138 2238 120 0 0 chr11 87632754 87633053 -63150500 - AluSx SINE Alu -13 299 1 309 332 42 76 chr11 87633053 87633178 -63150375 - MIR SINE MIR -124 138 23 254 328 229 35 chr11 87633291 87633492 -63150061 + MIR SINE MIR 15 254 -8 205 224 0 20 chr11 87633793 87633842 -63149711 + L2 LINE L2 3229 3276 -37 273 283 138 40 chr11 87634605 87634757 -63148796 + MIR SINE MIR 50 216 -46 500 335 81 23 chr11 87635149 87635370 -63148183 - MIR SINE MIR -4 258 25 315 308 67 8 chr11 87636831 87636951 -63146602 + MIR SINE MIR 48 174 -88 1888 168 32 3 chr11 87637336 87637652 -63145901 - MER7A DNA MER2_type -23 323 1 1356 273 109 56 chr11 87638164 87639088 -63144465 + L1MC4 LINE L1 7070 8042 0 231 355 87 29 chr11 87640341 87640417 -63143136 - L2 LINE L2 -11 3261 3191 2574 150 5 30 chr11 87640417 87640856 -63142697 + MSTA LTR MaLR 1 428 0 231 355 87 29 chr11 87640856 87640917 -63142636 - L2 LINE L2 -81 3191 3116 1482 177 57 16 chr11 87641301 87641617 -63141936 + MLT1B LTR MaLR 60 388 -2 22 0 0 0 chr11 87641877 87641899 -63141654 + AT_rich Low_complexity Low_complexity 1 22 0 2959 174 27 12 chr11 87642788 87643376 -63140177 - L1MC3 LINE L1 0 7785 7189 266 308 11 11 chr11 87643376 87643467 -63140086 - MLT1E2 LTR MaLR -442 125 35 235 293 93 0 chr11 87643683 87643758 -63139795 + L2 LINE L2 2698 2779 -535 213 392 29 29 chr11 87644501 87644672 -63138881 - MIR3 SINE MIR -15 193 23 29 0 0 0 chr11 87644883 87644912 -63138641 + AT_rich Low_complexity Low_complexity 1 29 0 967 227 124 65 chr11 87645168 87645562 -63137991 + MER39 LTR ERV1 1 611 -96 2202 124 33 33 chr11 87645562 87645926 -63137627 - THE1B LTR MaLR 0 364 1 967 227 124 65 chr11 87645926 87646030 -63137523 + MER39 LTR ERV1 611 707 0 374 267 40 20 chr11 87646890 87646991 -63136562 - L2 LINE L2 -16 3256 3154 197 321 12 37 chr11 87647712 87647793 -63135760 - L2 LINE L2 -2 3270 3192 411 283 60 12 chr11 87647869 87648035 -63135518 - L2 LINE L2 -179 3093 2920 405 324 0 0 chr11 87648327 87648432 -63135121 + L2 LINE L2 3168 3272 0 256 278 91 53 chr11 87648468 87648655 -63134898 + MIR SINE MIR 63 256 -6 400 264 0 18 chr11 87650979 87651089 -63132464 + MIR SINE MIR 77 184 -78 213 254 127 0 chr11 87651941 87652012 -63131541 + MIR SINE MIR 92 171 -91 2271 133 28 0 chr11 87652651 87653005 -63130548 - THE1B LTR MaLR 0 364 1 375 354 28 26 chr11 87653361 87653547 -63130006 + MIR SINE MIR 5 189 -60 2187 128 0 0 chr11 87654445 87654743 -63128810 - AluSg SINE Alu -12 298 1 2055 165 96 19 chr11 87654769 87654960 -63128593 - L1MB8 LINE L1 -1 6177 5987 787 252 127 9 chr11 87654960 87655282 -63128271 - L1MC3 LINE L1 -1806 5979 5620 348 275 0 84 chr11 87655807 87655949 -63127604 - MER5A DNA MER1_type -6 183 54 318 26 0 0 chr11 87657010 87657049 -63126504 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 197 317 58 33 chr11 87658074 87658194 -63125359 + L2 LINE L2 3191 3313 0 516 273 38 49 chr11 87658566 87658833 -63124720 - L1MEd LINE L1 -4888 1231 968 23 0 0 0 chr11 87659065 87659088 -63124465 + AT_rich Low_complexity Low_complexity 1 23 0 3304 226 5 0 chr11 87659167 87659901 -63123652 - L1PA15 LINE L1 -876 5270 4533 5213 128 56 9 chr11 87659904 87660763 -63122790 + L1PA15 LINE L1 5264 6162 -3 2458 123 8 5 chr11 87660922 87661295 -63122258 + THE1C LTR MaLR 1 374 -1 631 322 218 30 chr11 87661383 87661750 -63121803 + L2 LINE L2 2001 2298 -974 1504 196 105 6 chr11 87661750 87662082 -63121471 + MLT1A1 LTR MaLR 1 365 0 631 322 218 30 chr11 87662082 87662633 -63120920 + L2 LINE L2 2298 3084 -188 3808 183 51 10 chr11 87663974 87664547 -63119006 + L1MA8 LINE L1 5057 5605 -686 1853 152 48 34 chr11 87664547 87664902 -63118651 + THE1B LTR MaLR 5 364 0 11260 110 5 0 chr11 87664902 87666474 -63117079 + THE1B-int LTR MaLR 1 1580 0 1843 156 21 46 chr11 87666474 87666847 -63116706 + THE1B LTR MaLR 1 364 0 3808 183 51 10 chr11 87666847 87667233 -63116320 + L1MA8 LINE L1 5604 6053 -238 528 151 46 1 chr11 87667234 87667356 -63116197 + L1MA7 LINE L1 6161 6291 0 209 297 31 0 chr11 87667436 87667500 -63116053 - L3 LINE CR1 -105 1472 1407 309 294 18 28 chr11 87667571 87667680 -63115873 - MIR SINE MIR -4 258 151 493 318 77 63 chr11 87667703 87668197 -63115356 + MLT1H LTR MaLR 43 543 -6 387 316 38 19 chr11 87668203 87668361 -63115192 - MIR SINE MIR -100 162 2 489 345 42 39 chr11 87668389 87668610 -63114943 - L3 LINE CR1 -311 1266 1042 1285 270 3 12 chr11 87668610 87668951 -63114602 + MER58B DNA MER1_type 4 341 0 489 345 42 39 chr11 87668951 87669059 -63114494 - L3 LINE CR1 -535 1042 936 321 329 84 36 chr11 87669116 87669341 -63114212 - L3 LINE CR1 -789 788 553 320 311 25 16 chr11 87669399 87669521 -63114032 - L2 LINE L2 -1 3312 3190 241 415 63 0 chr11 87669627 87669747 -63113806 - L3 LINE CR1 -1155 422 294 309 265 205 8 chr11 87669747 87669864 -63113689 - MER5A DNA MER1_type -2 187 48 269 304 80 14 chr11 87670020 87670158 -63113395 + MIR SINE MIR 7 153 -109 191 345 48 0 chr11 87670199 87670283 -63113270 - L2 LINE L2 -545 2769 2682 309 286 13 0 chr11 87670359 87670436 -63113117 - L2 LINE L2 -10 3262 3185 272 300 104 45 chr11 87670599 87670819 -63112734 - L2 LINE L2 -806 2508 2276 342 347 12 29 chr11 87671442 87671612 -63111941 - MIR SINE MIR -10 252 86 331 319 140 31 chr11 87671615 87672106 -63111447 + MLT1K LTR MaLR 14 585 -3 267 350 33 8 chr11 87672161 87672281 -63111272 - MIR SINE MIR -55 153 31 240 304 14 29 chr11 87672647 87672716 -63110837 + L2 LINE L2 3204 3271 -1 631 144 83 55 chr11 87672807 87672988 -63110565 - MER33 DNA MER1_type 0 324 139 371 183 122 0 chr11 87672986 87673068 -63110485 - MER33 DNA MER1_type -232 92 1 * 320 318 32 39 chr11 87674663 87674817 -63108736 + MIR SINE MIR 64 216 -46 198 0 0 0 chr11 87675925 87675947 -63107606 + (A)n Simple_repeat Simple_repeat 1 22 0 210 370 84 0 chr11 87676127 87676246 -63107307 + MIR SINE MIR 49 177 -85 24 0 0 0 chr11 87677018 87677042 -63106511 + AT_rich Low_complexity Low_complexity 1 24 0 245 304 24 40 chr11 87677048 87677173 -63106380 + (ATGGTG)n Simple_repeat Simple_repeat 2 124 0 * 265 316 0 0 chr11 87677110 87677189 -63106364 + (TGG)n Simple_repeat Simple_repeat 2 80 0 688 233 19 13 chr11 87677235 87677394 -63106159 + MER63A DNA MER1_type 50 209 -1 246 318 15 0 chr11 87677417 87677483 -63106070 + (TGG)n Simple_repeat Simple_repeat 3 69 0 394 191 26 33 chr11 87677498 87677650 -63105903 + (ATGGTG)n Simple_repeat Simple_repeat 3 153 0 1230 240 88 78 chr11 87678337 87678837 -63104716 + MLT1D LTR MaLR 1 505 0 2362 62 0 52 chr11 87679144 87679468 -63104085 + AluY SINE Alu 1 307 -4 2045 134 115 16 chr11 87679583 87679957 -63103596 + LTR57 LTR ERVL 1 411 0 1683 221 19 21 chr11 87680017 87680392 -63103161 - MLT1A2 LTR MaLR 0 374 1 467 328 66 25 chr11 87680451 87680695 -63102858 + MIR SINE MIR 8 261 -1 1826 223 179 0 chr11 87681078 87681559 -63101994 - MLT1F1 LTR MaLR 0 567 1 25 0 0 0 chr11 87681673 87681698 -63101855 + AT_rich Low_complexity Low_complexity 1 25 0 7313 38 8 0 chr11 87681698 87683206 -63100347 - L1PA4 LINE L1 0 6155 4642 235 293 93 0 chr11 87684093 87684168 -63099385 - L2 LINE L2 -535 2779 2698 266 308 11 11 chr11 87684383 87684474 -63099079 + MLT1F1 LTR MaLR 35 125 -442 2959 174 27 12 chr11 87684474 87685062 -63098491 + L1MC3 LINE L1 7189 7785 0 22 0 0 0 chr11 87685951 87685973 -63097580 + AT_rich Low_complexity Low_complexity 1 22 0 1482 177 57 16 chr11 87686233 87686549 -63097004 - MLT1B LTR MaLR -2 388 60 231 355 87 29 chr11 87686933 87686994 -63096559 + L2 LINE L2 3116 3172 -100 2574 150 5 30 chr11 87686994 87687433 -63096120 - MSTA LTR MaLR 0 428 1 231 355 87 29 chr11 87687433 87687509 -63096044 + L2 LINE L2 3172 3261 -11 39 68 0 0 chr11 87687937 87688011 -63095542 + AT_rich Low_complexity Low_complexity 1 74 0 233 288 48 40 chr11 87688743 87688868 -63094685 + L2 LINE L2 2934 3059 -213 1464 247 43 32 chr11 87688931 87689082 -63094471 + MLT1C LTR MaLR 1 149 -318 2256 112 3 0 chr11 87689082 87689376 -63094177 - AluSq SINE Alu -15 298 4 1464 247 43 32 chr11 87689376 87689686 -63093867 + MLT1C LTR MaLR 149 467 0 241 236 18 0 chr11 87689707 87689762 -63093791 - L2 LINE L2 0 3313 3258 204 259 148 30 chr11 87689758 87689893 -63093660 + L2 LINE L2 3161 3311 -2 * 539 311 92 17 chr11 87690222 87690460 -63093093 + MIR SINE MIR 1 256 -6 915 230 148 39 chr11 87690541 87690898 -63092655 - MSTD LTR MaLR 0 396 1 11357 29 4 0 chr11 87691853 87693219 -63090334 - L1P LINE L1 -890 5256 3886 10467 42 1 0 chr11 87693219 87694532 -63089021 + L1P LINE L1 2574 3887 -2259 1241 191 59 28 chr11 87694882 87695274 -63088279 - MLT2B1 LTR ERVL 0 414 1 2809 199 18 65 chr11 87697147 87697814 -63085739 - MER82 DNA MER2_type -4 649 14 21 36 0 0 chr11 87698113 87698141 -63085412 + AT_rich Low_complexity Low_complexity 1 28 0 28430 131 16 16 chr11 87698141 87704559 -63078994 + L1PA8 LINE L1 7 6473 -14 309 195 23 23 chr11 87704724 87704811 -63078742 + L1MC5 LINE L1 7827 7913 -48 1928 72 108 14 chr11 87705015 87705292 -63078261 - AluY SINE Alu -8 303 1 827 175 7 7 chr11 87705357 87705511 -63078042 + MLT2B1 LTR ERVL 3 156 -364 382 286 87 49 chr11 87707158 87707224 -63076329 + L1MC/D LINE L1 5321 5383 -2425 1147 200 74 39 chr11 87707224 87707509 -63076044 + AluJo SINE Alu 1 295 -7 382 286 87 49 chr11 87707509 87707708 -63075845 + L1MC/D LINE L1 5383 5596 -2212 413 228 73 16 chr11 87707800 87707923 -63075630 - MIR SINE MIR -25 237 108 287 192 14 0 chr11 87708058 87708131 -63075422 + (TA)n Simple_repeat Simple_repeat 1 74 0 2012 257 90 6 chr11 87708251 87708886 -63074667 - MER63C DNA MER1_type 0 930 243 23 78 0 0 chr11 87708986 87709037 -63074516 + AT_rich Low_complexity Low_complexity 1 51 0 37 69 0 0 chr11 87709232 87709304 -63074249 + AT_rich Low_complexity Low_complexity 1 72 0 229 288 48 40 chr11 87710036 87710161 -63073392 + L2 LINE L2 2934 3059 -213 1488 246 41 32 chr11 87710224 87710376 -63073177 + MLT1C LTR MaLR 1 150 -317 2231 112 3 0 chr11 87710376 87710670 -63072883 - AluSq SINE Alu -15 298 4 1488 246 41 32 chr11 87710670 87710980 -63072573 + MLT1C LTR MaLR 150 467 0 246 236 18 0 chr11 87711001 87711056 -63072497 - L2 LINE L2 0 3313 3258 204 259 148 30 chr11 87711052 87711187 -63072366 + L2 LINE L2 3161 3311 -2 * 551 311 92 17 chr11 87711516 87711754 -63071799 + MIR SINE MIR 1 256 -6 1046 225 136 36 chr11 87711835 87712195 -63071358 - MSTD LTR MaLR 0 396 1 257 271 48 30 chr11 87713131 87713297 -63070256 - L1MEc LINE L1 -4923 1387 1219 438 255 14 42 chr11 87713376 87713588 -63069965 - L1MEc LINE L1 -4951 1168 963 272 335 81 28 chr11 87713618 87713866 -63069687 - L1MEc LINE L1 -5359 760 500 226 361 45 15 chr11 87714126 87714259 -63069294 + MIR SINE MIR 17 153 -109 370 306 67 88 chr11 87714283 87714659 -63068894 - MLT1K LTR MaLR -17 571 204 209 216 21 62 chr11 87714845 87714893 -63068660 + (TAG)n Simple_repeat Simple_repeat 1 45 -48 1800 167 49 12 chr11 87714893 87715222 -63068331 + MER2 DNA MER2_type 4 344 0 209 216 21 62 chr11 87715222 87715270 -63068283 + (TAG)n Simple_repeat Simple_repeat 45 93 0 192 40 0 0 chr11 87715465 87715490 -63068063 + (TG)n Simple_repeat Simple_repeat 2 26 0 276 323 57 82 chr11 87716990 87717269 -63066284 + L2 LINE L2 2461 2732 -582 242 231 11 55 chr11 87717308 87717399 -63066154 + MER34B LTR ERV1 31 117 -448 24 0 0 0 chr11 87718359 87718383 -63065170 + AT_rich Low_complexity Low_complexity 1 24 0 345 267 91 40 chr11 87718858 87719034 -63064519 - MIR3 SINE MIR -13 195 11 279 0 0 0 chr11 87719104 87719135 -63064418 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 297 0 0 0 chr11 87719134 87719167 -63064386 + (GA)n Simple_repeat Simple_repeat 2 34 0 41 58 0 0 chr11 87719204 87719273 -63064280 + AT_rich Low_complexity Low_complexity 1 69 0 3106 148 100 0 chr11 87719521 87719847 -63063706 - MER7C DNA MER2_type -2426 602 310 203 61 30 0 chr11 87719847 87719880 -63063673 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 3106 148 100 0 chr11 87719880 87720092 -63063461 - MER7C DNA MER2_type -2718 310 10 375 187 0 6 chr11 87720546 87720632 -63062921 + MER58 DNA MER1_type 132 2420 0 283 331 71 8 chr11 87722455 87722582 -63060971 + MIR SINE MIR 11 145 -117 631 264 64 11 chr11 87723492 87723895 -63059658 - Charlie4a DNA MER1_type 0 508 44 300 243 14 0 chr11 87724071 87724141 -63059412 - MIR SINE MIR -3 259 189 366 310 124 9 chr11 87724872 87725098 -63058455 + L1ME LINE L1 3789 4040 -2106 266 339 33 29 chr11 87725260 87725671 -63057882 + L1ME LINE L1 4256 4664 -1482 304 379 65 0 chr11 87725680 87725912 -63057641 + L1ME LINE L1 4730 4976 -1170 434 305 143 22 chr11 87726159 87726279 -63057274 + L1ME LINE L1 5292 5396 -2412 192 97 0 0 chr11 87726279 87726310 -63057243 + (TTAAA)n Simple_repeat Simple_repeat 3 33 0 434 305 143 22 chr11 87726310 87726461 -63057092 + L1ME LINE L1 5396 5596 -2212 265 208 0 0 chr11 87726535 87726588 -63056965 + L1ME LINE L1 5744 5796 -366 265 244 12 47 chr11 87727006 87727092 -63056461 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 342 266 44 79 chr11 87727250 87727502 -63056051 - MER112 DNA MER1_type 0 260 18 199 366 11 43 chr11 87727904 87727997 -63055556 - L2 LINE L2 -27 3286 3197 351 236 96 79 chr11 87728108 87728286 -63055267 + MIR SINE MIR 20 200 -62 707 237 40 11 chr11 87730340 87730517 -63053036 - MER5A DNA MER1_type 0 189 8 248 295 13 0 chr11 87731032 87731110 -63052443 + MER116 DNA Mariner 1 79 -1 305 212 94 47 chr11 87731197 87731282 -63052271 + L2 LINE L2 3225 3313 0 1666 188 36 14 chr11 87732648 87733005 -63050548 - MLT1A1 LTR MaLR 0 365 1 399 313 40 40 chr11 87734853 87735029 -63048524 - MIR SINE MIR -37 225 50 1840 156 36 3 chr11 87735177 87735479 -63048074 - AluJb SINE Alu 0 312 1 400 290 33 93 chr11 87736386 87736569 -63046984 - MIR3 SINE MIR -7 201 30 2190 95 10 3 chr11 87737297 87737602 -63045951 - AluSc SINE Alu 0 309 3 238 287 90 8 chr11 87738579 87738701 -63044852 - MIR SINE MIR -38 224 93 * 282 306 37 28 chr11 87738697 87738805 -63044748 - L2 LINE L2 0 3313 3205 311 293 13 0 chr11 87738837 87738912 -63044641 - MER5A DNA MER1_type -101 88 13 506 307 82 61 chr11 87738916 87739258 -63044295 - L2 LINE L2 -416 2898 2550 606 268 146 0 chr11 87739351 87739515 -63044038 + MER5A DNA MER1_type 1 188 -1 1565 281 52 15 chr11 87740062 87740600 -63042953 - Tigger8 DNA MER2_type -63 603 46 1754 196 43 14 chr11 87740600 87740947 -63042606 + MER6 DNA MER2_type 3 359 -506 2444 147 40 36 chr11 87741069 87741212 -63042341 + MER6 DNA MER2_type 388 529 -336 2097 130 0 0 chr11 87741212 87741505 -63042048 + AluSx SINE Alu 1 293 -19 2444 147 40 36 chr11 87741505 87741830 -63041723 + MER6 DNA MER2_type 529 858 -7 294 304 129 21 chr11 87742242 87742436 -63041117 - MIR SINE MIR -25 237 23 2030 139 10 3 chr11 87742709 87743049 -63040504 - AluSq SINE Alu 0 342 1 354 231 65 46 chr11 87743165 87743273 -63040280 - MIR SINE MIR -122 140 31 427 273 48 42 chr11 87744214 87744379 -63039174 - MIR SINE MIR -53 209 44 282 261 239 23 chr11 87744486 87744616 -63038937 - MIR SINE MIR -14 248 91 307 286 66 28 chr11 87744636 87744753 -63038800 - MIR SINE MIR -82 126 7 436 297 45 38 chr11 87744765 87744994 -63038559 + MER20B DNA MER1_type 1 218 -1 379 264 95 29 chr11 87745845 87746024 -63037529 - MIR SINE MIR -66 142 5 247 293 0 30 chr11 87746171 87746270 -63037283 - MIR SINE MIR -122 140 45 216 0 0 0 chr11 87747545 87747569 -63035984 + (T)n Simple_repeat Simple_repeat 1 24 0 503 217 58 17 chr11 87748108 87748228 -63035325 - MIR SINE MIR -81 181 57 932 184 73 44 chr11 87748398 87748713 -63034840 + MER33 DNA MER1_type 1 324 0 433 300 47 13 chr11 87748951 87749101 -63034452 + MIR SINE MIR 97 251 -11 394 346 30 0 chr11 87749865 87749998 -63033555 - L2 LINE L2 0 3272 3136 1084 251 4 21 chr11 87750085 87750364 -63033189 + AluJo SINE Alu 1 274 -38 976 176 12 6 chr11 87751014 87751184 -63032369 - FAM SINE Alu 0 175 5 2013 107 7 4 chr11 87751742 87752045 -63031508 - AluSx SINE Alu 0 304 1 271 332 10 111 chr11 87752172 87752371 -63031182 + L2 LINE L2 2980 3158 -114 619 216 22 22 chr11 87752382 87752563 -63030990 - MER69 DNA AcHobo 0 2526 2346 22 70 0 0 chr11 87752829 87752872 -63030681 + AT_rich Low_complexity Low_complexity 1 43 0 814 275 33 137 chr11 87752877 87752992 -63030561 - MER69 DNA AcHobo -2057 469 344 1964 179 65 7 chr11 87752992 87753395 -63030158 + MSTB LTR MaLR 1 426 0 814 275 33 137 chr11 87753395 87753799 -63029754 - MER69 DNA AcHobo -2182 344 4 209 258 15 30 chr11 87753833 87753899 -63029654 + L2 LINE L2 3245 3309 -4 1048 283 46 22 chr11 87754253 87754663 -63028890 + L1ME1 LINE L1 5742 6161 -5 389 310 80 56 chr11 87756118 87756331 -63027222 + MIR SINE MIR 33 250 -12 366 309 52 22 chr11 87757736 87757872 -63025681 - MIR SINE MIR -76 186 47 192 114 57 0 chr11 87758047 87758082 -63025471 - L2 LINE L2 -6 3266 3230 229 277 0 31 chr11 87758136 87758201 -63025352 - MLT1K LTR MaLR -8 580 518 1594 206 92 9 chr11 87758354 87758703 -63024850 - MSTD LTR MaLR -16 380 3 502 319 35 6 chr11 87758704 87758873 -63024680 - MIR SINE MIR -28 234 61 851 185 57 62 chr11 87758937 87759148 -63024405 - MLT1A1 LTR MaLR -3 362 153 2226 71 0 14 chr11 87759154 87759558 -63023995 - AluY SINE Alu 0 403 4 26 0 0 0 chr11 87759567 87759593 -63023960 + AT_rich Low_complexity Low_complexity 1 26 0 800 212 0 0 chr11 87759599 87759745 -63023808 - FAM SINE Alu -16 169 24 483 175 175 9 chr11 87759771 87759885 -63023668 - MLT1A1 LTR MaLR -206 159 27 357 377 22 14 chr11 87760426 87760564 -63022989 + L2 LINE L2 3134 3272 0 312 27 0 0 chr11 87761018 87761055 -63022498 + (TA)n Simple_repeat Simple_repeat 1 37 0 1111 52 0 7 chr11 87761056 87761191 -63022362 - AluSp/q SINE Alu -18 295 162 288 250 210 0 chr11 87761876 87762000 -63021553 + MIR SINE MIR 100 249 -13 206 354 10 40 chr11 87762070 87762169 -63021384 - MIR SINE MIR -118 144 49 195 275 210 0 chr11 87763202 87763340 -63020213 - MIR3 SINE MIR -3 205 39 2307 90 0 19 chr11 87764533 87764843 -63018710 - AluSx SINE Alu -8 304 1 185 376 43 21 chr11 87765477 87765570 -63017983 - L2 LINE L2 -40 3232 3138 324 234 13 0 chr11 87765671 87765748 -63017805 - MIR SINE MIR -2 260 183 5774 133 7 1 chr11 87765854 87766757 -63016796 + L1PA15 LINE L1 5256 6163 -2 207 361 46 27 chr11 87767246 87767465 -63016088 + L2 LINE L2 3085 3307 -6 313 310 26 0 chr11 87768088 87768204 -63015349 - MER20B DNA MER1_type -206 577 459 481 285 23 15 chr11 87768513 87768643 -63014910 - L2 LINE L2 -2 3270 3140 318 339 79 18 chr11 87769099 87769264 -63014289 - MER5B DNA MER1_type 0 178 4 217 352 70 27 chr11 87769366 87769622 -63013931 + L2 LINE L2 3029 3295 -18 497 213 65 71 chr11 87769627 87769782 -63013771 - MIR SINE MIR 0 262 109 199 242 0 0 chr11 87769854 87769887 -63013666 - MIR SINE MIR -60 148 116 22 0 0 0 chr11 87770296 87770318 -63013235 + AT_rich Low_complexity Low_complexity 1 22 0 337 328 8 16 chr11 87770862 87770990 -63012563 - MIR SINE MIR -6 256 130 1805 185 10 0 chr11 87771121 87771419 -63012134 - AluSx SINE Alu -11 301 1 523 99 0 0 chr11 87771449 87771530 -63012023 + L1MA3 LINE L1 6220 6300 -5 488 273 104 28 chr11 87772306 87772536 -63011017 - MIR SINE MIR 0 262 18 490 333 8 8 chr11 87772544 87772670 -63010883 - L2 LINE L2 0 3272 3147 433 264 9 18 chr11 87773211 87773321 -63010232 + MER21B LTR ERV1 16 124 -739 1670 246 95 40 chr11 87773376 87773998 -63009555 + MER21B LTR ERV1 100 755 -108 384 310 109 11 chr11 87774077 87774251 -63009302 + MIR SINE MIR 45 235 -27 190 259 69 0 chr11 87774481 87774539 -63009014 - MIR SINE MIR -62 146 85 211 322 0 67 chr11 87775302 87775392 -63008161 - MIR SINE MIR -91 171 88 192 378 39 16 chr11 87775394 87775521 -63008032 - L3 LINE CR1 -20 1557 1428 182 289 77 0 chr11 87776360 87776412 -63007141 - MIR SINE MIR -66 142 87 535 288 90 13 chr11 87776679 87776906 -63006647 + MLT1J1 LTR MaLR 59 301 -145 255 31 0 0 chr11 87777371 87777403 -63006150 + (CAA)n Simple_repeat Simple_repeat 1 32 0 185 143 48 0 chr11 87777457 87777499 -63006054 + CT-rich Low_complexity Low_complexity 3 46 0 259 310 71 30 chr11 87777536 87777733 -63005820 - MIR SINE MIR 0 262 58 21 0 0 0 chr11 87778635 87778656 -63004897 + AT_rich Low_complexity Low_complexity 1 21 0 231 151 58 23 chr11 87778684 87778770 -63004783 + (TTATA)n Simple_repeat Simple_repeat 1 89 0 239 353 0 39 chr11 87778771 87778873 -63004680 - MIR SINE MIR -66 142 45 792 300 25 11 chr11 87779199 87779459 -63004094 + MIR SINE MIR 2 262 0 914 150 5 66 chr11 87779465 87779625 -63003928 - L1MA6 LINE L1 -2 6298 6153 2389 96 0 10 chr11 87779625 87779939 -63003614 - AluSq SINE Alu 0 313 3 914 150 5 66 chr11 87779939 87779991 -63003562 - L1MA6 LINE L1 -147 6153 6099 255 335 37 64 chr11 87780030 87780218 -63003335 + L2 LINE L2 2914 3096 -176 6221 144 29 7 chr11 87780851 87782932 -63000621 + L1PA13 LINE L1 4047 6160 -3 566 243 107 41 chr11 87782978 87783344 -63000209 + HsTC2 DNA Tc2 1505 1894 -4 325 313 31 16 chr11 87783687 87783815 -62999738 - MIR SINE MIR -113 149 20 29 0 0 0 chr11 87783948 87783977 -62999576 + AT_rich Low_complexity Low_complexity 1 29 0 260 304 0 71 chr11 87784554 87784666 -62998887 - MIR SINE MIR -64 144 41 631 269 6 12 chr11 87785475 87785635 -62997918 - MLT1E3 LTR MaLR -115 509 351 294 156 0 0 chr11 87785648 87785712 -62997841 + T-rich Low_complexity Low_complexity 1 64 0 456 209 46 52 chr11 87787819 87787972 -62995581 - L1MEc LINE L1 -4488 1908 1757 3872 206 38 28 chr11 87788074 87789141 -62994412 - L1MB8 LINE L1 -6 6172 5093 538 307 118 62 chr11 87789144 87789831 -62993722 - L2 LINE L2 -27 3286 2553 239 355 11 0 chr11 87790487 87790580 -62992973 - MIR SINE MIR -73 135 42 26 0 0 0 chr11 87790677 87790703 -62992850 + AT_rich Low_complexity Low_complexity 1 26 0 232 339 140 23 chr11 87792619 87792790 -62990763 - L2 LINE L2 -7 3306 3116 799 278 109 79 chr11 87793124 87793220 -62990333 + MLT1D LTR MaLR 109 201 -266 312 27 0 0 chr11 87793220 87793257 -62990296 + (CA)n Simple_repeat Simple_repeat 2 38 0 799 278 109 79 chr11 87793257 87793514 -62990039 + MLT1D LTR MaLR 201 465 -2 251 331 169 0 chr11 87793958 87794082 -62989471 - L3 LINE CR1 -18 1559 1415 751 328 54 43 chr11 87794113 87794558 -62988995 - L2 LINE L2 0 3313 2864 278 345 24 55 chr11 87794605 87794770 -62988783 + MIR3 SINE MIR 1 160 -48 1057 176 0 0 chr11 87794916 87795086 -62988467 + AluJb SINE Alu 136 305 -7 204 352 0 0 chr11 87795201 87795255 -62988298 + L3 LINE CR1 1398 1451 -126 922 169 0 26 chr11 87795384 87795538 -62988015 + AluJb SINE Alu 148 297 -15 286 300 25 0 chr11 87795539 87795659 -62987894 + MER103 DNA DNA 31 153 -13 444 338 143 31 chr11 87796666 87797024 -62986529 - L2 LINE L2 -715 2599 2202 317 354 153 0 chr11 87797103 87797312 -62986241 - MIR SINE MIR 0 262 22 352 267 97 36 chr11 87797335 87797530 -62986023 - L2 LINE L2 -1217 2097 1891 207 0 0 0 chr11 87798605 87798628 -62984925 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 304 143 0 0 chr11 87798657 87798706 -62984847 + MADE1 DNA Mariner 32 80 0 256 330 28 50 chr11 87799681 87799860 -62983693 + L2 LINE L2 2823 2997 -275 1802 153 10 3 chr11 87799974 87800274 -62983279 - AluSx SINE Alu -3 309 8 227 288 51 0 chr11 87800975 87801034 -62982519 + MLT1J1 LTR MaLR 275 336 -110 1381 164 30 9 chr11 87801115 87801346 -62982207 - AluJo SINE Alu -76 236 1 2573 183 51 7 chr11 87801484 87802032 -62981521 + L1MB3 LINE L1 5611 6182 -1 241 314 50 33 chr11 87802110 87802231 -62981322 + MIR SINE MIR 23 145 -117 205 162 0 0 chr11 87804445 87804482 -62979071 + (TG)n Simple_repeat Simple_repeat 2 38 0 201 159 0 0 chr11 87804623 87804667 -62978886 + (TAA)n Simple_repeat Simple_repeat 1 44 0 385 333 33 49 chr11 87804844 87805027 -62978526 - MIR SINE MIR -52 210 31 646 351 30 62 chr11 87806305 87806738 -62976815 + L2 LINE L2 2852 3270 -2 299 344 86 12 chr11 87806736 87806899 -62976654 - MIR SINE MIR 0 262 88 * 688 316 44 33 chr11 87807555 87807985 -62975568 + LTR16B LTR ERVL 28 462 -2 273 212 121 0 chr11 87808160 87808259 -62975294 + L1MC4 LINE L1 7733 7843 -199 452 180 33 49 chr11 87808261 87808383 -62975170 + L1MC4 LINE L1 7922 8041 -1 264 130 0 0 chr11 87808741 87808787 -62974766 + (TTCC)n Simple_repeat Simple_repeat 4 49 0 739 250 56 17 chr11 87808893 87809073 -62974480 + MIR SINE MIR 2 188 -74 198 310 70 0 chr11 87809175 87809275 -62974278 + MIR SINE MIR 156 262 0 318 317 56 37 chr11 87810066 87810256 -62973297 + MIR SINE MIR 30 220 -42 22 35 0 0 chr11 87810372 87810401 -62973152 + AT_rich Low_complexity Low_complexity 1 29 0 239 237 157 16 chr11 87811088 87811182 -62972371 - MIR SINE MIR -75 133 43 220 366 98 49 chr11 87811208 87811372 -62972181 - L2 LINE L2 -2 3270 3099 617 301 65 50 chr11 87811404 87811743 -62971810 + L1M3d LINE L1 173 756 -5547 306 328 11 33 chr11 87811872 87812048 -62971505 + L1M3d LINE L1 669 1087 -5216 1530 231 39 96 chr11 87812434 87813118 -62970435 + L1MB1 LINE L1 825 1546 -4757 1452 170 40 74 chr11 87813118 87813441 -62970112 + AluJb SINE Alu 1 312 0 1530 231 39 96 chr11 87813441 87813536 -62970017 + L1MB1 LINE L1 1546 1645 -4658 3519 206 40 7 chr11 87813536 87814245 -62969308 + MER44D DNA MER2_type 2 605 0 1530 231 39 96 chr11 87814245 87814507 -62969046 + L1MB1 LINE L1 1645 1782 -4521 * 4150 191 24 60 chr11 87814491 87816232 -62967321 + L1MB1 LINE L1 4701 6404 0 782 282 63 76 chr11 87816725 87817619 -62965934 + HAL1 LINE L1 824 1705 -802 229 275 123 29 chr11 87818498 87818636 -62964917 + HAL1 LINE L1 2245 2395 -112 903 120 47 0 chr11 87818846 87818996 -62964557 + L1MA9 LINE L1 6010 6166 -146 183 243 27 0 chr11 87819118 87819155 -62964398 + MIR SINE MIR 211 248 -14 22 35 0 0 chr11 87819266 87819295 -62964258 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr11 87819845 87819867 -62963686 + AT_rich Low_complexity Low_complexity 1 22 0 1302 198 86 38 chr11 87819872 87820211 -62963342 + MLT1D LTR MaLR 1 355 -150 25 31 0 0 chr11 87820404 87820436 -62963117 + AT_rich Low_complexity Low_complexity 1 32 0 293 377 27 0 chr11 87821523 87821669 -62961884 - MIR SINE MIR -16 246 97 28 29 0 0 chr11 87823260 87823295 -62960258 + AT_rich Low_complexity Low_complexity 1 35 0 216 350 47 80 chr11 87823825 87824099 -62959454 + L2 LINE L2 2812 3076 -196 225 188 47 0 chr11 87824256 87824320 -62959233 + (TA)n Simple_repeat Simple_repeat 2 68 0 269 296 156 7 chr11 87825367 87825502 -62958051 - MIR SINE MIR -6 256 102 22 35 0 0 chr11 87825689 87825718 -62957835 + AT_rich Low_complexity Low_complexity 1 29 0 491 360 39 17 chr11 87826166 87826399 -62957154 - MIR SINE MIR 0 262 25 221 258 61 0 chr11 87826398 87826464 -62957089 - MIR SINE MIR -134 128 59 * 1327 229 24 43 chr11 87826517 87826889 -62956664 + MLT1A1 LTR MaLR 1 365 0 4448 56 10 43 chr11 87827288 87827899 -62955654 + LTR10C LTR ERV1 1 591 0 379 365 55 5 chr11 87828083 87828283 -62955270 + MIR SINE MIR 53 262 0 331 332 31 101 chr11 87828956 87829311 -62954242 + L2 LINE L2 2935 3264 -8 337 308 81 20 chr11 87829530 87829728 -62953825 - MIR SINE MIR -6 256 47 298 282 0 0 chr11 87829842 87829913 -62953640 - L2 LINE L2 -16 3256 3186 504 239 85 32 chr11 87830748 87830936 -62952617 - MIR SINE MIR -32 230 33 218 329 0 0 chr11 87831020 87831090 -62952463 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 459 52 0 0 chr11 87831093 87831151 -62952402 + (TG)n Simple_repeat Simple_repeat 2 59 0 3844 262 71 81 chr11 87831161 87833121 -62950432 - L1MC4a LINE L1 -614 7194 5255 733 132 0 23 chr11 87833203 87833332 -62950221 - L1PA16 LINE L1 0 6166 6041 1623 185 24 0 chr11 87833351 87833648 -62949905 - L1PA15 LINE L1 -7 6158 5855 217 237 0 0 chr11 87833654 87833713 -62949840 + (TA)n Simple_repeat Simple_repeat 2 60 0 690 190 0 0 chr11 87834005 87834126 -62949427 - FLAM_C SINE Alu -22 121 1 190 402 41 16 chr11 87834156 87834278 -62949275 - MIR SINE MIR -65 143 19 390 308 200 5 chr11 87834551 87834736 -62948817 + MIR SINE MIR 5 225 -37 817 109 0 14 chr11 87834812 87834959 -62948594 + (CCCTAA)n Simple_repeat Simple_repeat 2 146 0 2005 258 63 33 chr11 87835156 87836049 -62947504 - L1ME3A LINE L1 -115 6055 5127 1336 165 48 23 chr11 87837432 87837741 -62945812 - MER33 DNA MER1_type -4 320 4 3531 218 106 30 chr11 87837820 87838807 -62944746 - L1MC3 LINE L1 -17 7768 6707 348 64 0 0 chr11 87838814 87838861 -62944692 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 1490 165 0 12 chr11 87838863 87839112 -62944441 - AluJb SINE Alu -32 280 35 276 209 146 9 chr11 87839320 87839430 -62944123 + MER113 DNA MER1_type? 297 421 -100 358 269 65 65 chr11 87839577 87839763 -62943790 - MIR SINE MIR -26 236 51 1850 144 34 7 chr11 87840035 87840333 -62943220 + AluSx SINE Alu 3 308 -4 418 344 24 38 chr11 87840543 87840755 -62942798 + MIR SINE MIR 2 210 -52 224 368 34 26 chr11 87841101 87841218 -62942335 + L2 LINE L2 3155 3272 0 2352 101 0 0 chr11 87841278 87841584 -62941969 - AluSg SINE Alu -4 306 1 390 42 0 0 chr11 87842686 87842734 -62940819 + (TG)n Simple_repeat Simple_repeat 1 48 0 2482 203 34 29 chr11 87842831 87843508 -62940045 + Tigger7 DNA MER2_type 1 2581 -6 2102 252 39 22 chr11 87843655 87844330 -62939223 - L1ME1 LINE L1 -79 6087 5402 1967 269 32 13 chr11 87844338 87845017 -62938536 - L1ME1 LINE L1 -765 5381 4690 630 298 55 9 chr11 87846498 87846716 -62936837 + MIR SINE MIR 29 256 -6 704 178 103 17 chr11 87846840 87847014 -62936539 - MER5A DNA MER1_type 0 189 1 4190 212 62 10 chr11 87847074 87848066 -62935487 + L1PB1 LINE L1 6 1048 -5815 9712 193 17 11 chr11 87848588 87852234 -62931319 + L1PB1 LINE L1 1401 5026 -1841 207 0 0 0 chr11 87852234 87852257 -62931296 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 9712 193 17 11 chr11 87852257 87853606 -62929947 + L1PB1 LINE L1 5026 6366 -501 192 40 0 0 chr11 87853606 87853631 -62929922 + (TA)n Simple_repeat Simple_repeat 1 25 0 330 26 0 0 chr11 87853632 87853671 -62929882 + (TG)n Simple_repeat Simple_repeat 2 40 0 9712 193 17 11 chr11 87853671 87853765 -62929788 + L1PB1 LINE L1 6365 6599 -268 181 328 60 0 chr11 87854591 87854658 -62928895 - L2 LINE L2 -1 3271 3201 1750 164 32 45 chr11 87855644 87856022 -62927531 + THE1C LTR MaLR 1 373 -2 649 199 7 0 chr11 87856023 87856164 -62927389 + L1MA9 LINE L1 6171 6312 0 238 330 180 0 chr11 87857853 87857953 -62925600 - MIR SINE MIR -119 143 26 307 232 159 58 chr11 87858025 87858163 -62925390 + L2 LINE L2 3162 3313 0 250 360 92 12 chr11 87858374 87858538 -62925015 - MIR3 SINE MIR -22 186 10 538 285 57 35 chr11 87858834 87859062 -62924491 - MIR SINE MIR -18 244 12 195 388 0 0 chr11 87860083 87860150 -62923403 - L2 LINE L2 -3 3310 3244 234 0 0 0 chr11 87860188 87860214 -62923339 + (TG)n Simple_repeat Simple_repeat 1 26 0 248 302 101 113 chr11 87860378 87860424 -62923129 + L2 LINE L2 3027 3072 -200 4159 102 32 8 chr11 87860424 87861044 -62922509 + MER41B LTR ERV1 1 635 0 248 302 101 113 chr11 87861044 87861245 -62922308 + L2 LINE L2 3072 3271 -1 1424 116 10 0 chr11 87861903 87862101 -62921452 - AluSg/x SINE Alu -25 285 86 2200 98 17 3 chr11 87863223 87863520 -62920033 - AluY SINE Alu -10 301 1 2413 217 112 29 chr11 87863901 87864547 -62919006 - L1MCa LINE L1 -5709 717 19 342 297 172 0 chr11 87865431 87865559 -62917994 + L2 LINE L2 3162 3311 -2 2021 135 3 7 chr11 87866120 87866423 -62917130 + AluSx SINE Alu 1 302 -10 1242 150 0 39 chr11 87867716 87867946 -62915607 + AluJo SINE Alu 86 307 0 1173 252 87 95 chr11 87868497 87869630 -62913923 - L1M4 LINE L1 -1425 4721 3599 11610 84 3 3 chr11 87869733 87871260 -62912293 - HERVK22 LTR ERVK -4334 2503 977 261 0 0 0 chr11 87872035 87872064 -62911489 + (A)n Simple_repeat Simple_repeat 1 29 0 322 367 51 25 chr11 87872766 87872962 -62910591 + MIR SINE MIR 16 216 -46 204 279 206 15 chr11 87874212 87874348 -62909205 - MIR SINE MIR -17 245 84 223 376 10 0 chr11 87874878 87874979 -62908574 - MIR SINE MIR -112 150 49 1876 135 0 68 chr11 87875006 87875331 -62908222 - AluJo SINE Alu -9 303 1 230 352 113 38 chr11 87875532 87875876 -62907677 - L2 LINE L2 -961 2353 1984 362 289 113 6 chr11 87876110 87876269 -62907284 + L2 LINE L2 3089 3264 -49 962 165 99 11 chr11 87876274 87876456 -62907097 + MER58A DNA MER1_type 27 224 0 229 246 16 33 chr11 87876456 87876517 -62907036 + L2 LINE L2 3254 3313 0 331 234 19 37 chr11 87876558 87876665 -62906888 + MIR SINE MIR 97 201 -61 23 0 0 0 chr11 87877191 87877214 -62906339 + AT_rich Low_complexity Low_complexity 1 23 0 448 309 118 0 chr11 87878322 87878474 -62905079 + MIR SINE MIR 37 206 -56 714 214 8 0 chr11 87880403 87880534 -62903019 - L1PA16 LINE L1 -40 6126 5995 813 168 0 0 chr11 87880716 87880835 -62902718 + FLAM_C SINE Alu 2 120 -23 414 204 0 23 chr11 87881041 87881129 -62902424 + L1MC1 LINE L1 6239 6324 -9 297 269 78 36 chr11 87881965 87882132 -62901421 - MIR SINE MIR -44 218 45 23 0 0 0 chr11 87882245 87882268 -62901285 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr11 87883798 87883822 -62899731 + AT_rich Low_complexity Low_complexity 1 24 0 203 191 0 24 chr11 87884168 87884210 -62899343 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 1881 165 3 0 chr11 87884410 87884719 -62898834 + AluSx SINE Alu 1 310 -2 371 270 95 8 chr11 87885979 87886105 -62897448 + MIR SINE MIR 20 156 -106 2168 110 7 0 chr11 87886187 87886479 -62897074 + AluSc SINE Alu 1 294 -15 457 243 14 0 chr11 87886512 87886656 -62896897 + (TA)n Simple_repeat Simple_repeat 1 146 0 298 293 12 0 chr11 87886929 87887011 -62896542 + MLT1J2 LTR MaLR 49 131 -319 258 308 47 9 chr11 87887068 87887175 -62896378 + MLT1J1 LTR MaLR 149 259 -187 265 289 135 51 chr11 87887688 87887844 -62895709 + MIR SINE MIR 5 173 -89 234 81 0 0 chr11 87888173 87888210 -62895343 + (A)n Simple_repeat Simple_repeat 1 37 0 209 206 130 109 chr11 87888883 87888975 -62894578 + MIR SINE MIR 61 154 -108 259 364 0 10 chr11 87889046 87889145 -62894408 - MIR3 SINE MIR -108 100 3 802 293 95 58 chr11 87889252 87889831 -62893722 - L2 LINE L2 0 3313 2707 647 46 37 9 chr11 87889893 87890001 -62893552 + (TAGA)n Simple_repeat Simple_repeat 2 112 0 721 209 13 20 chr11 87891144 87891297 -62892256 + MLT1E1 LTR MaLR 503 654 0 1574 210 71 9 chr11 87891494 87891829 -62891724 - MLT1A1 LTR MaLR 0 396 1 340 156 0 31 chr11 87892002 87892066 -62891487 + MER82 DNA MER2_type 329 390 -263 259 279 25 0 chr11 87892212 87892291 -62891262 - MER82 DNA MER2_type -8 645 565 * 363 136 0 33 chr11 87892279 87892351 -62891202 + FRAM/FAM SINE Alu 16 73 -102 890 145 28 7 chr11 87892414 87892559 -62890994 + AluJb SINE Alu 152 299 -13 2699 220 14 16 chr11 87892559 87893136 -62890417 - MER82 DNA MER2_type -76 577 2 281 321 25 0 chr11 87893266 87893347 -62890206 - L2 LINE L2 -40 3232 3150 29 28 0 0 chr11 87894231 87894267 -62889286 + AT_rich Low_complexity Low_complexity 1 36 0 242 242 33 0 chr11 87894549 87894640 -62888913 - L1MC4 LINE L1 -1335 6707 6614 21 71 0 0 chr11 87894783 87894825 -62888728 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr11 87895366 87895389 -62888164 + AT_rich Low_complexity Low_complexity 1 23 0 259 203 63 38 chr11 87896187 87896266 -62887287 + MIR SINE MIR 126 206 -56 1591 206 31 0 chr11 87898058 87898349 -62885204 - AluJb SINE Alu -12 300 1 637 329 52 70 chr11 87898353 87899238 -62884315 + L2 LINE L2 2035 2903 -411 3132 150 41 6 chr11 87899251 87899792 -62883761 + Tigger3b DNA MER2_type 1 560 -671 520 215 87 13 chr11 87900993 87901142 -62882411 + MER112 DNA MER1_type 1 160 -100 258 291 70 59 chr11 87902215 87902486 -62881067 - L1MC4 LINE L1 -2253 5555 5282 715 276 122 19 chr11 87902791 87903276 -62880277 - L1MC4 LINE L1 -2718 3428 2894 252 301 12 48 chr11 87903728 87903811 -62879742 - L2 LINE L2 -2 3270 3191 233 345 53 58 chr11 87904310 87904481 -62879072 - MIR SINE MIR -30 232 63 189 345 126 17 chr11 87904813 87904932 -62878621 - L2 LINE L2 0 3272 3141 23 68 0 0 chr11 87905289 87905333 -62878220 + AT_rich Low_complexity Low_complexity 1 44 0 306 0 0 0 chr11 87905823 87905857 -62877696 + (TG)n Simple_repeat Simple_repeat 1 34 0 367 376 17 17 chr11 87906002 87906180 -62877373 - MIR3 SINE MIR -10 198 21 22 35 0 0 chr11 87906265 87906294 -62877259 + AT_rich Low_complexity Low_complexity 1 29 0 653 228 0 8 chr11 87906888 87907015 -62876538 + FLAM_A SINE Alu 1 126 -7 885 63 16 8 chr11 87907831 87907957 -62875596 + AluY SINE Alu 1 127 -184 285 246 14 0 chr11 87909860 87909929 -62873624 + GA-rich Low_complexity Low_complexity 3 72 0 25 65 0 0 chr11 87910500 87910546 -62873007 + AT_rich Low_complexity Low_complexity 1 46 0 970 187 6 12 chr11 87910984 87911155 -62872398 + L1M2a LINE L1 1819 1988 -5180 * 2025 217 25 4 chr11 87911146 87911621 -62871932 + L1M2a LINE L1 2761 3247 -3920 1291 230 106 0 chr11 87911626 87912118 -62871435 + L1M2a LINE L1 3805 4348 -2819 21 36 0 0 chr11 87912470 87912498 -62871055 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 87913901 87913922 -62869631 + AT_rich Low_complexity Low_complexity 1 21 0 542 253 114 98 chr11 87914304 87914680 -62868873 + L2 LINE L2 2932 3313 0 322 132 26 0 chr11 87914997 87915073 -62868480 + (TATG)n Simple_repeat Simple_repeat 3 80 0 285 301 131 59 chr11 87915505 87915658 -62867895 - L2 LINE L2 -5 3267 3104 34 0 0 0 chr11 87915804 87915838 -62867715 + AT_rich Low_complexity Low_complexity 1 34 0 180 167 0 71 chr11 87917175 87917217 -62866336 - MER5B DNA MER1_type -16 162 124 224 290 9 75 chr11 87917393 87917500 -62866053 + L2 LINE L2 3214 3313 0 381 268 0 0 chr11 87917593 87917690 -62865863 + L1MC4 LINE L1 7930 8026 -16 317 244 88 75 chr11 87917752 87917912 -62865641 - L1MC4a LINE L1 -1740 6068 5907 1088 249 121 27 chr11 87917913 87918243 -62865310 + MLT1A1 LTR MaLR 1 361 -4 204 231 0 0 chr11 87918266 87918305 -62865248 + CT-rich Low_complexity Low_complexity 2 40 0 264 274 0 53 chr11 87918308 87918403 -62865150 - L1MC4a LINE L1 -1908 5900 5811 936 297 43 11 chr11 87918458 87918808 -62864745 - L1MC4a LINE L1 -2099 5709 5349 293 285 128 24 chr11 87919143 87919519 -62864034 - L1MC4a LINE L1 -1100 5046 4632 21 0 0 0 chr11 87919802 87919823 -62863730 + AT_rich Low_complexity Low_complexity 1 21 0 375 197 88 138 chr11 87920261 87920380 -62863173 - MIR SINE MIR -28 234 124 1853 139 13 17 chr11 87920380 87920681 -62862872 + AluSx SINE Alu 1 300 -12 375 197 88 138 chr11 87920681 87920755 -62862798 - MIR SINE MIR -138 124 48 21 0 0 0 chr11 87921254 87921275 -62862278 + AT_rich Low_complexity Low_complexity 1 21 0 306 148 0 0 chr11 87921813 87921867 -62861686 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 362 268 31 39 chr11 87921904 87922031 -62861522 - L2 LINE L2 -1 3312 3187 181 284 30 45 chr11 87923874 87923941 -62859612 + L3b LINE CR1 1426 1491 -92 400 204 82 20 chr11 87923991 87924089 -62859464 + MLT1D LTR MaLR 402 505 0 329 0 0 24 chr11 87924887 87924929 -62858624 + (CA)n Simple_repeat Simple_repeat 2 42 0 1194 115 154 21 chr11 87926013 87926247 -62857306 + AluSg1 SINE Alu 13 277 -32 1287 247 78 67 chr11 87926377 87926916 -62856637 + MER41C LTR ERV1 1 545 -9 1480 199 116 72 chr11 87926951 87927453 -62856100 + LTR1B LTR ERV1 1 524 -302 21 0 0 0 chr11 87927963 87927984 -62855569 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr11 87930126 87930161 -62853392 + (TG)n Simple_repeat Simple_repeat 1 35 0 881 163 49 25 chr11 87930176 87930379 -62853174 - L1MB8 LINE L1 -14 6164 5957 1747 245 48 41 chr11 87930417 87930647 -62852906 - L1M4 LINE L1 -1156 5801 5574 1405 194 9 53 chr11 87930647 87930966 -62852587 - AluJo SINE Alu -7 305 1 1747 245 48 41 chr11 87930966 87931315 -62852238 - L1M4 LINE L1 -1383 5574 5218 1023 255 30 6 chr11 87931303 87931640 -62851913 - L1M4 LINE L1 -2462 4495 4151 * 3039 193 53 14 chr11 87931648 87932344 -62851209 + L1 LINE L1 3960 4682 -1464 2340 246 84 17 chr11 87932339 87932985 -62850568 - L1M4 LINE L1 -5745 1114 426 * 2245 196 87 4 chr11 87933008 87933477 -62850076 + LTR22 LTR ERVK 1 508 -1 12113 102 11 5 chr11 87933481 87935191 -62848362 + HERVK22 LTR ERVK 1 1720 -5117 6930 113 17 32 chr11 87935300 87936705 -62846848 + HERVH LTR ERV1 178 1871 -5842 216 313 0 0 chr11 87936805 87936885 -62846668 + G-rich Low_complexity Low_complexity 1 80 0 357 276 22 0 chr11 87936941 87937075 -62846478 - L1P LINE L1 -1049 5097 4961 250 217 0 17 chr11 87937077 87937137 -62846416 - MLT1F1 LTR MaLR -508 59 1 3154 98 29 22 chr11 87937961 87938449 -62845104 - MLT2A1 LTR ERVL 0 520 1 977 105 0 13 chr11 87938449 87938602 -62844951 - HERVL-A1 LTR ERVL 0 5654 5504 400 335 104 14 chr11 87939512 87939733 -62843820 + MIR SINE MIR 22 262 0 306 275 29 0 chr11 87940748 87940817 -62842736 - L2 LINE L2 -11 3302 3232 207 111 0 28 chr11 87940850 87940886 -62842667 + (TTA)n Simple_repeat Simple_repeat 2 36 0 5157 82 10 7 chr11 87941256 87941955 -62841598 - HERVL-A1 LTR ERVL -148 5506 4806 1722 87 0 0 chr11 87941951 87942180 -62841373 - HERVL-A1 LTR ERVL -5425 229 1 * 2843 85 85 10 chr11 87942180 87942220 -62841333 - MLT2A1 LTR ERVL 0 444 408 879 32 40 0 chr11 87942220 87942345 -62841208 + (TAGA)n Simple_repeat Simple_repeat 4 133 0 2843 85 85 10 chr11 87942345 87942717 -62840836 - MLT2A1 LTR ERVL -36 408 1 410 371 0 8 chr11 87943267 87943399 -62840154 - L2 LINE L2 -1 3271 3141 39 38 0 0 chr11 87943444 87943497 -62840056 + AT_rich Low_complexity Low_complexity 1 53 0 399 149 39 0 chr11 87943497 87943651 -62839902 + (TA)n Simple_repeat Simple_repeat 1 160 0 22 0 0 0 chr11 87943656 87943678 -62839875 + AT_rich Low_complexity Low_complexity 1 22 0 5616 178 56 5 chr11 87943998 87945113 -62838440 - L1MC3 LINE L1 -228 7557 6387 454 290 229 4 chr11 87945113 87945344 -62838209 - L2 LINE L2 -1309 2005 1723 470 327 50 32 chr11 87945397 87945617 -62837936 - L3 LINE CR1 -65 1512 1289 1886 98 4 0 chr11 87945633 87945908 -62837645 - L1PA7 LINE L1 0 6154 5879 2079 128 3 16 chr11 87945924 87946228 -62837325 + AluSx SINE Alu 1 300 -12 318 359 55 11 chr11 87946512 87946693 -62836860 - MIR SINE MIR -23 239 51 34 55 0 0 chr11 87946949 87947004 -62836549 + AT_rich Low_complexity Low_complexity 1 55 0 250 394 0 20 chr11 87947025 87947124 -62836429 - L2 LINE L2 -209 3063 2967 184 349 101 48 chr11 87948593 87948782 -62834771 + MIR3 SINE MIR 7 205 -3 2064 113 6 35 chr11 87949652 87949996 -62833557 - MER1B DNA MER1_type 0 337 4 222 280 150 20 chr11 87950147 87950247 -62833306 + L2 LINE L2 3159 3271 -1 1715 184 89 82 chr11 87950603 87951076 -62832477 + MLT2C2 LTR ERVL 3 520 0 480 122 22 33 chr11 87951233 87951323 -62832230 - L1MC1 LINE L1 0 6333 6245 1553 185 0 25 chr11 87951502 87951783 -62831770 + MER1B DNA MER1_type 66 339 0 3126 197 23 24 chr11 87951787 87952492 -62831061 - L1MC/D LINE L1 -554 5779 5073 3798 132 21 10 chr11 87952492 87953120 -62830433 + MER41B LTR ERV1 1 635 0 3126 197 23 24 chr11 87953120 87953699 -62829854 - L1MC/D LINE L1 -1260 5073 4495 602 219 70 0 chr11 87953739 87953853 -62829700 - FLAM_A SINE Alu -8 125 4 2578 245 38 9 chr11 87953866 87954662 -62828891 - L1MC/D LINE L1 -2313 3833 3015 631 169 137 0 chr11 87954697 87954821 -62828732 - Tigger1 DNA MER2_type -2276 142 2 265 331 63 24 chr11 87954978 87955105 -62828448 + L2 LINE L2 3139 3270 -2 22 0 0 0 chr11 87956105 87956127 -62827426 + AT_rich Low_complexity Low_complexity 1 22 0 180 345 24 0 chr11 87956150 87956234 -62827319 + MIR SINE MIR 118 203 -59 225 119 0 0 chr11 87956707 87956749 -62826804 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 185 338 59 0 chr11 87957096 87957164 -62826389 - L2 LINE L2 -8 3264 3193 608 284 55 6 chr11 87957384 87957567 -62825986 - MIR SINE MIR -26 236 45 191 363 88 9 chr11 87957575 87957688 -62825865 - L2 LINE L2 -613 2701 2580 493 310 77 50 chr11 87957716 87958013 -62825540 - HAL1 LINE L1 -1110 1397 1093 917 307 198 22 chr11 87958129 87959032 -62824521 - HAL1 LINE L1 -1441 1066 5 259 208 0 0 chr11 87959787 87959835 -62823718 + MIR SINE MIR 106 153 -109 204 265 15 29 chr11 87960296 87960364 -62823189 - L2 LINE L2 0 3272 3206 298 308 19 28 chr11 87960904 87961011 -62822542 - L2 LINE L2 -23 3290 3185 23 33 0 0 chr11 87961027 87961057 -62822496 + AT_rich Low_complexity Low_complexity 1 30 0 417 364 35 9 chr11 87961516 87961744 -62821809 - L2 LINE L2 -222 3050 2817 943 172 42 0 chr11 87961782 87961974 -62821579 - L1MC3 LINE L1 -32 7753 7554 37935 89 7 5 chr11 87962093 87967225 -62816328 + HERVK22 LTR ERVK 1692 6837 0 2298 186 94 9 chr11 87967225 87967692 -62815861 + LTR22 LTR ERVK 1 507 -2 347 352 0 0 chr11 87967711 87967816 -62815737 - L1M4b LINE L1 -6464 395 291 633 280 26 15 chr11 87967831 87968046 -62815507 - L1M4 LINE L1 -6319 536 11 182 222 67 0 chr11 87968460 87968505 -62815048 + MIR SINE MIR 88 135 -127 303 313 54 0 chr11 87969503 87969615 -62813938 + L2 LINE L2 3196 3313 0 8243 149 33 16 chr11 87970443 87971216 -62812337 - Tigger1 DNA MER2_type 0 2418 1607 2173 97 3 26 chr11 87971216 87971524 -62812029 + AluY SINE Alu 1 301 -10 8243 149 33 16 chr11 87971524 87972189 -62811364 - Tigger1 DNA MER2_type -811 1607 955 369 121 0 33 chr11 87972382 87972473 -62811080 + (TA)n Simple_repeat Simple_repeat 2 89 0 399 333 98 18 chr11 87972491 87972716 -62810837 + MIR SINE MIR 20 262 0 236 397 60 21 chr11 87973853 87974087 -62809466 + MIR SINE MIR 1 243 -19 255 400 25 12 chr11 87974356 87974516 -62809037 - MIR SINE MIR -30 178 17 214 337 74 11 chr11 87974684 87974779 -62808774 + MIR SINE MIR 48 148 -114 238 244 17 0 chr11 87975146 87975265 -62808288 + (CATATA)n Simple_repeat Simple_repeat 2 122 0 493 240 0 62 chr11 87975296 87975488 -62808065 + (TA)n Simple_repeat Simple_repeat 1 180 0 453 258 16 28 chr11 87975521 87975703 -62807850 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 453 280 23 0 chr11 87975686 87975861 -62807692 + (TA)n Simple_repeat Simple_repeat 2 180 0 393 223 0 0 chr11 87975885 87975979 -62807574 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 294 285 131 8 chr11 87976782 87976912 -62806641 + MIR SINE MIR 9 154 -108 251 322 26 61 chr11 87977141 87977256 -62806297 + L2 LINE L2 3142 3252 -20 181 385 106 11 chr11 87977314 87977493 -62806060 - MIR3 SINE MIR -10 198 3 286 373 35 7 chr11 87978108 87978250 -62805303 + MIR SINE MIR 15 160 -102 658 336 83 18 chr11 87978607 87978946 -62804607 + MLT1I LTR MaLR 49 409 0 261 152 0 0 chr11 87981103 87981149 -62802404 - Alu SINE Alu -7 301 256 1310 123 28 9 chr11 87981252 87981463 -62802090 - AluSc SINE Alu -94 215 1 384 262 63 40 chr11 87982116 87982236 -62801317 + MIR SINE MIR 29 152 -105 2300 64 14 0 chr11 87982236 87982518 -62801035 + AluY SINE Alu 1 286 -25 23 0 0 0 chr11 87982523 87982546 -62801007 + AT_rich Low_complexity Low_complexity 1 23 0 187 280 102 25 chr11 87982546 87982664 -62800889 + MIR SINE MIR 136 262 0 323 269 17 34 chr11 87983147 87983266 -62800287 + MLT1J LTR MaLR 391 507 -4 314 380 63 51 chr11 87983280 87983614 -62799939 + L2 LINE L2 2934 3271 -1 183 377 15 46 chr11 87984849 87984979 -62798574 - L2 LINE L2 -194 3078 2953 773 272 121 28 chr11 87985229 87985519 -62798034 - L2 LINE L2 -1 3312 2996 2220 112 0 0 chr11 87985537 87985840 -62797713 - AluSg SINE Alu -7 303 1 615 263 21 42 chr11 87985872 87986062 -62797491 + MIR SINE MIR 76 261 -1 802 327 145 10 chr11 87986143 87986837 -62796716 + L2 LINE L2 2469 3272 -41 191 36 36 0 chr11 87986842 87986870 -62796683 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 181 390 140 41 chr11 87987101 87987416 -62796137 + L2 LINE L2 2920 3265 -7 24 53 0 0 chr11 87987899 87987937 -62795616 + AT_rich Low_complexity Low_complexity 1 38 0 2104 144 20 53 chr11 87988649 87988731 -62794822 + MER51B LTR ERV1 1 84 -293 2241 115 0 10 chr11 87988731 87989043 -62794510 - AluSx SINE Alu -1 311 3 2104 144 20 53 chr11 87989043 87989419 -62794134 + MER51B LTR ERV1 84 377 0 247 282 27 36 chr11 87991058 87991168 -62792385 - MIR SINE MIR -6 256 148 1992 121 26 13 chr11 87991200 87991506 -62792047 - AluSq SINE Alu -3 310 1 284 0 0 27 chr11 87992285 87992322 -62791231 + (CA)n Simple_repeat Simple_repeat 1 36 0 751 275 123 32 chr11 87992433 87992927 -62790626 + MLT1L LTR MaLR 15 553 -62 1922 98 0 0 chr11 87994035 87994291 -62789262 - AluSq SINE Alu -2 311 56 968 243 56 60 chr11 87994305 87994820 -62788733 - L1MEc LINE L1 -3927 2469 1957 732 285 110 34 chr11 87994830 87995718 -62787835 - L1MEc LINE L1 -4584 1812 857 589 321 96 31 chr11 87995777 87996477 -62787076 - L1MEc LINE L1 -5617 779 35 1255 299 54 11 chr11 87996479 87996919 -62786634 - L2 LINE L2 -277 3036 2583 356 338 159 17 chr11 87998085 87998505 -62785048 - L2 LINE L2 -3 3310 2831 198 0 0 0 chr11 87999033 87999055 -62784498 + (CA)n Simple_repeat Simple_repeat 2 23 0 203 0 37 0 chr11 87999436 87999463 -62784090 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 261 57 0 0 chr11 87999939 87999974 -62783579 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 82 0 0 chr11 88000451 88000500 -62783053 + AT_rich Low_complexity Low_complexity 1 49 0 1141 214 91 9 chr11 88000652 88000970 -62782583 - L1MA9 LINE L1 0 6312 5969 384 288 48 7 chr11 88001869 88002015 -62781538 + MIR SINE MIR 73 224 -38 2579 185 28 13 chr11 88002412 88003318 -62780235 - L1M3 LINE L1 -557 5777 4782 243 194 236 0 chr11 88003642 88003714 -62779839 - L2 LINE L2 -2 3311 3223 506 299 5 33 chr11 88003963 88004147 -62779406 + MIR SINE MIR 83 261 -1 475 357 45 12 chr11 88004551 88004795 -62778758 + MIR SINE MIR 8 259 -3 211 264 42 42 chr11 88004882 88004954 -62778599 + L2 LINE L2 3201 3272 0 526 231 64 17 chr11 88005055 88005228 -62778325 + MER53 DNA DNA 9 189 0 4385 200 20 31 chr11 88005472 88006936 -62776617 - L1P4 LINE L1 -485 7119 5681 4749 246 30 15 chr11 88007038 88007105 -62776448 - L1P4 LINE L1 -3004 4580 4516 2055 135 3 3 chr11 88007105 88007409 -62776144 - AluSx SINE Alu -8 304 1 4749 246 30 15 chr11 88007409 88009333 -62774220 - L1P4 LINE L1 -3068 4516 2553 859 311 49 21 chr11 88009582 88009968 -62773585 - L1P4 LINE L1 -4990 2591 2195 608 262 48 71 chr11 88011253 88011505 -62772048 + MIR SINE MIR 11 256 -6 392 384 52 34 chr11 88012160 88012513 -62771040 - L3 LINE CR1 -6 1571 1209 2104 118 3 3 chr11 88012513 88012810 -62770743 - AluSx SINE Alu -11 301 5 392 384 52 34 chr11 88012810 88012844 -62770709 - L3 LINE CR1 -368 1209 1177 531 382 14 0 chr11 88013107 88013314 -62770239 + MIR SINE MIR 2 211 -51 373 324 19 0 chr11 88013369 88013474 -62770079 + MIR SINE MIR 41 147 -115 384 271 76 7 chr11 88013474 88013618 -62769935 + MLT1G1 LTR MaLR 1 154 -441 384 239 154 56 chr11 88013849 88014277 -62769276 - L1 LINE L1 -2839 4009 1647 415 93 13 27 chr11 88014291 88014366 -62769187 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 486 254 44 43 chr11 88014527 88014741 -62768812 + MLT1F1 LTR MaLR 377 567 0 192 286 41 0 chr11 88014748 88014797 -62768756 + MIR SINE MIR 151 201 -61 773 251 28 0 chr11 88014818 88014997 -62768556 - MER5A DNA MER1_type -1 188 5 225 196 0 0 chr11 88015300 88015351 -62768202 + GA-rich Low_complexity Low_complexity 2 52 0 23 0 0 0 chr11 88015460 88015483 -62768070 + AT_rich Low_complexity Low_complexity 1 23 0 205 86 29 0 chr11 88015541 88015576 -62767977 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 2865 183 50 7 chr11 88016363 88016942 -62766611 + MER6A DNA MER2_type 1 604 -1 363 168 0 112 chr11 88017574 88017770 -62765783 + A-rich Low_complexity Low_complexity 3 176 0 21 36 0 0 chr11 88017776 88017804 -62765749 + AT_rich Low_complexity Low_complexity 1 28 0 2595 12 23 0 chr11 88017911 88018252 -62765301 - L1P2 LINE L1 -584 5571 5226 279 328 36 12 chr11 88018421 88018605 -62764948 + MIR3 SINE MIR 1 218 -44 1939 122 4 7 chr11 88019248 88019527 -62764026 - AluSx SINE Alu -25 287 10 476 298 55 33 chr11 88020112 88020293 -62763260 - MIR SINE MIR -25 237 53 1445 272 32 5 chr11 88020847 88021255 -62762298 - LTR16A LTR ERVL -7 443 25 1138 220 67 72 chr11 88021659 88022050 -62761503 - MLT1B LTR MaLR -1 389 1 263 258 0 45 chr11 88022513 88022602 -62760951 + L1ME4a LINE L1 5597 5681 -440 296 312 24 24 chr11 88022866 88023036 -62760517 + L1ME4a LINE L1 5947 6116 -5 228 304 51 0 chr11 88023102 88023181 -62760372 - MIR SINE MIR 0 262 180 211 212 246 42 chr11 88023469 88023587 -62759966 - MIR3 SINE MIR -35 173 32 934 100 15 0 chr11 88024087 88024217 -62759336 + AluSq/x SINE Alu 1 132 -180 1270 20 26 0 chr11 88025192 88025345 -62758208 - L1PA3 LINE L1 0 6155 5999 23 54 0 0 chr11 88025583 88025620 -62757933 + AT_rich Low_complexity Low_complexity 1 37 0 2059 118 0 0 chr11 88025620 88025900 -62757653 + AluSg SINE Alu 3 282 -28 261 0 0 0 chr11 88025900 88025929 -62757624 + (TTAA)n Simple_repeat Simple_repeat 2 30 0 359 238 146 53 chr11 88026453 88026604 -62756949 - L2 LINE L2 0 3313 3149 1889 326 57 36 chr11 88026612 88027791 -62755762 - L2 LINE L2 -1 3271 2053 192 344 64 32 chr11 88027951 88028169 -62755384 - L2 LINE L2 -662 2652 2428 755 198 32 16 chr11 88028864 88029051 -62754502 - L1MA4 LINE L1 -6 6294 6105 27 0 0 0 chr11 88029164 88029191 -62754362 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr11 88029325 88029348 -62754205 + AT_rich Low_complexity Low_complexity 1 23 0 409 301 78 0 chr11 88030943 88031046 -62752507 - MIR SINE MIR -146 116 6 236 198 74 12 chr11 88031181 88031262 -62752291 + L1MC4 LINE L1 6618 6703 -1339 21 57 0 0 chr11 88031262 88031297 -62752256 + AT_rich Low_complexity Low_complexity 1 35 0 273 119 0 0 chr11 88031322 88031364 -62752189 + (TA)n Simple_repeat Simple_repeat 1 42 0 282 278 0 0 chr11 88031367 88031457 -62752096 - L1MC4 LINE L1 -1339 6703 6614 258 224 0 82 chr11 88031459 88031557 -62751996 - L1MC4 LINE L1 -1339 6703 6614 234 0 0 0 chr11 88031559 88031585 -62751968 + (TG)n Simple_repeat Simple_repeat 2 27 0 1787 140 20 10 chr11 88031596 88031889 -62751664 - AluSx SINE Alu -16 296 1 193 305 25 8 chr11 88032003 88032121 -62751432 + L2 LINE L2 964 1083 -2231 275 315 0 0 chr11 88032127 88032254 -62751299 + C-rich Low_complexity Low_complexity 1 127 0 22 0 0 0 chr11 88032939 88032961 -62750592 + AT_rich Low_complexity Low_complexity 1 22 0 1198 232 28 67 chr11 88033146 88033504 -62750049 - MLT1A2 LTR MaLR -4 370 27 523 273 101 40 chr11 88034030 88034327 -62749226 - L1ME2 LINE L1 -10 6154 5840 577 292 69 64 chr11 88034344 88034828 -62748725 + L2 LINE L2 2768 3252 -61 206 378 70 6 chr11 88035117 88035273 -62748280 - MIR SINE MIR -41 221 56 197 267 93 40 chr11 88035368 88035443 -62748110 - MIR SINE MIR -56 206 128 2321 88 104 11 chr11 88035586 88035962 -62747591 - LTR7 LTR ERV1 -38 412 2 2314 98 53 13 chr11 88035963 88036340 -62747213 - HERVH LTR ERV1 0 7713 7322 803 110 47 8 chr11 88036338 88036465 -62747088 - HERVH LTR ERV1 -1894 5819 5688 * 978 281 112 45 chr11 88036676 88037436 -62746117 + L2 LINE L2 2511 3313 0 297 331 55 47 chr11 88037446 88037957 -62745596 - L1ME2 LINE L1 -359 5811 5297 28 48 0 0 chr11 88038025 88038067 -62745486 + AT_rich Low_complexity Low_complexity 1 42 0 226 156 67 0 chr11 88039205 88039250 -62744303 + MLT1L LTR MaLR 1 48 -567 282 260 29 0 chr11 88039260 88039364 -62744189 + (TA)n Simple_repeat Simple_repeat 1 107 0 481 223 36 27 chr11 88039371 88039483 -62744070 + MLT1J LTR MaLR 91 203 -308 672 257 52 93 chr11 88039538 88040129 -62743424 - L1MEc LINE L1 -3557 2658 2121 234 0 0 0 chr11 88040179 88040205 -62743348 + (TG)n Simple_repeat Simple_repeat 1 26 0 335 184 11 0 chr11 88040483 88040570 -62742983 + GA-rich Low_complexity Low_complexity 1 88 0 225 274 84 21 chr11 88041308 88041403 -62742150 + MIR SINE MIR 117 217 -45 235 211 200 22 chr11 88041561 88041651 -62741902 + MIR SINE MIR 64 169 -93 590 332 123 31 chr11 88043079 88043591 -62739962 + L2 LINE L2 1731 2289 -1025 297 165 0 33 chr11 88043591 88043682 -62739871 + (TA)n Simple_repeat Simple_repeat 1 88 0 321 313 0 0 chr11 88043917 88044013 -62739540 - MIR SINE MIR -81 181 86 284 367 85 0 chr11 88044111 88044288 -62739265 + L2 LINE L2 2804 2995 -277 363 252 61 46 chr11 88045174 88045305 -62738248 + L2 LINE L2 3176 3308 -5 211 378 0 0 chr11 88045410 88045492 -62738061 + L2 LINE L2 2804 2885 -428 * 240 309 48 12 chr11 88045468 88045552 -62738001 - MIR SINE MIR -69 193 107 315 272 158 28 chr11 88046392 88046646 -62736907 - L1ME4a LINE L1 -3 6118 5832 457 276 19 39 chr11 88046724 88046880 -62736673 + MIR SINE MIR 45 197 -65 256 358 55 21 chr11 88047009 88047339 -62736214 - L1ME4a LINE L1 -517 5604 5264 238 260 90 85 chr11 88048517 88048694 -62734859 - MIR SINE MIR -56 206 29 321 89 0 0 chr11 88049105 88049150 -62734403 + (TG)n Simple_repeat Simple_repeat 2 46 0 557 170 36 0 chr11 88049151 88049263 -62734290 - L1PA16 LINE L1 -9 6157 6042 373 226 32 11 chr11 88049371 88049464 -62734089 - MLT1I LTR MaLR -308 101 7 368 82 0 0 chr11 88049713 88049762 -62733791 + MADE1 DNA Mariner 31 79 -1 248 336 151 8 chr11 88049844 88049963 -62733590 + MIR3 SINE MIR 72 207 -1 235 255 11 64 chr11 88050037 88050131 -62733422 + MER117 DNA MER1_type 1 89 -108 21 0 0 0 chr11 88051048 88051069 -62732484 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 88051101 88051122 -62732431 + AT_rich Low_complexity Low_complexity 1 21 0 770 189 47 63 chr11 88051389 88051579 -62731974 - MER3 DNA MER1_type -8 201 15 228 35 0 0 chr11 88051893 88051922 -62731631 + (TG)n Simple_repeat Simple_repeat 2 30 0 474 340 106 27 chr11 88052105 88052623 -62730930 - L1MEd LINE L1 -4549 2014 1307 * 574 358 71 25 chr11 88052620 88053056 -62730497 - L1MEd LINE L1 -5000 1372 917 28 95 0 0 chr11 88053827 88053911 -62729642 + AT_rich Low_complexity Low_complexity 1 84 0 644 268 47 0 chr11 88054161 88054374 -62729179 + MER58A DNA MER1_type 1 106 -1 822 168 0 0 chr11 88054396 88054521 -62729032 - FLAM_C SINE Alu -18 125 1 405 215 116 33 chr11 88054523 88054644 -62728909 + MER58A DNA MER1_type 94 224 0 225 355 112 18 chr11 88055726 88055895 -62727658 - MIR SINE MIR -20 242 58 483 322 70 9 chr11 88056005 88056219 -62727334 + MIR SINE MIR 16 242 -20 491 337 147 8 chr11 88056562 88057136 -62726417 - L2 LINE L2 -131 3182 2486 2056 121 7 10 chr11 88057559 88057865 -62725688 - AluSx SINE Alu -7 305 1 334 305 76 38 chr11 88058849 88059059 -62724494 + MIR SINE MIR 30 247 -15 182 188 42 21 chr11 88059505 88059553 -62724000 + L2 LINE L2 3224 3272 0 290 306 0 14 chr11 88059997 88060069 -62723484 - MER91 DNA MER1_type -1 189 119 21 0 0 0 chr11 88060909 88060930 -62722623 + AT_rich Low_complexity Low_complexity 1 21 0 197 289 70 53 chr11 88062292 88062406 -62721147 - MIR SINE MIR -30 232 117 28 0 0 0 chr11 88062664 88062692 -62720861 + AT_rich Low_complexity Low_complexity 1 28 0 187 304 18 18 chr11 88063876 88063932 -62719621 + MIR SINE MIR 90 145 -117 21 36 0 0 chr11 88065643 88065671 -62717882 + AT_rich Low_complexity Low_complexity 1 28 0 239 341 12 0 chr11 88066002 88066084 -62717469 - MIR SINE MIR -171 91 9 732 211 0 39 chr11 88066369 88066549 -62717004 + L1MA9 LINE L1 6116 6288 -24 22 56 0 0 chr11 88066653 88066689 -62716864 + AT_rich Low_complexity Low_complexity 1 36 0 264 336 34 81 chr11 88066807 88066956 -62716597 - MIR3 SINE MIR -62 146 5 22 0 0 0 chr11 88067937 88067959 -62715594 + AT_rich Low_complexity Low_complexity 1 22 0 626 306 87 43 chr11 88068707 88069076 -62714477 + MLT2C1 LTR ERVL 13 397 0 221 340 32 39 chr11 88069347 88069503 -62714050 + MIR SINE MIR 58 212 -50 1788 100 104 4 chr11 88069516 88069786 -62713767 - AluSc SINE Alu -2 307 11 27 49 0 0 chr11 88070820 88070861 -62712692 + AT_rich Low_complexity Low_complexity 1 41 0 443 340 100 3 chr11 88071293 88071652 -62711901 + L1 LINE L1 4256 4649 -1497 616 335 27 5 chr11 88071976 88072200 -62711353 + MIR SINE MIR 26 254 -8 281 304 34 61 chr11 88072622 88072770 -62710783 - MIR SINE MIR -12 250 107 352 271 205 20 chr11 88073785 88073936 -62709617 - MIR SINE MIR 0 262 84 235 337 35 0 chr11 88074019 88074105 -62709448 - L2 LINE L2 -359 2913 2825 1168 269 65 6 chr11 88074368 88074691 -62708862 - MLT1H1 LTR MaLR -160 395 54 5987 96 0 0 chr11 88074693 88075607 -62707946 - L1PA14 LINE L1 0 6161 5240 823 243 24 21 chr11 88125610 88125898 -62657655 - L1M4 LINE L1 -4996 1859 1571 * 3069 212 43 40 chr11 88125866 88126610 -62656943 - L1M4 LINE L1 -5948 911 166 1686 135 59 20 chr11 88126610 88126943 -62656610 + MLT2A2 LTR ERVL 1 309 -144 490 125 11 11 chr11 88127085 88127173 -62656380 - AluS SINE Alu -225 88 1 5439 154 28 21 chr11 88127176 88128126 -62655427 - MER66-int LTR ERV1 -4510 2166 1210 502 157 11 11 chr11 88128229 88128318 -62655235 - MER66-int LTR ERV1 -3574 3102 3014 358 250 97 8 chr11 88128312 88128436 -62655117 - MER66-int LTR ERV1 -6192 484 350 * 565 362 109 47 chr11 88128634 88129438 -62654115 + L2 LINE L2 2429 3271 -1 313 327 133 44 chr11 88129471 88129697 -62653856 + MIR SINE MIR 15 260 -2 189 74 0 0 chr11 88129697 88129724 -62653829 + (TAG)n Simple_repeat Simple_repeat 3 29 0 240 167 0 0 chr11 88130250 88130298 -62653255 + (TG)n Simple_repeat Simple_repeat 1 48 0 349 312 46 67 chr11 88130573 88130900 -62652653 - L1ME LINE L1 -306 5815 5496 643 282 58 79 chr11 88131211 88131541 -62652012 + L2 LINE L2 2988 3310 -3 23 0 0 0 chr11 88132310 88132333 -62651220 + AT_rich Low_complexity Low_complexity 1 23 0 270 346 37 9 chr11 88133030 88133137 -62650416 + MIR SINE MIR 45 154 -108 21 0 0 0 chr11 88134020 88134041 -62649512 + AT_rich Low_complexity Low_complexity 1 21 0 463 340 47 63 chr11 88134211 88134464 -62649089 - MIR SINE MIR -2 260 12 231 341 94 36 chr11 88134503 88134641 -62648912 - L2 LINE L2 0 3313 3168 450 130 26 0 chr11 88135166 88135243 -62648310 - MADE1 DNA Mariner 0 80 2 25 0 0 0 chr11 88136088 88136113 -62647440 + AT_rich Low_complexity Low_complexity 1 25 0 335 353 56 30 chr11 88136155 88136387 -62647166 + L2 LINE L2 2619 2856 -458 255 180 40 0 chr11 88136889 88136939 -62646614 + L2 LINE L2 3221 3272 0 206 283 83 0 chr11 88137295 88137355 -62646198 + MIR SINE MIR 85 149 -59 563 319 100 32 chr11 88137581 88137891 -62645662 + MLT1K LTR MaLR 137 467 -121 237 250 52 31 chr11 88138341 88138437 -62645116 - MIR SINE MIR -43 219 122 1361 156 124 18 chr11 88138443 88138725 -62644828 - MLT1D LTR MaLR -174 331 20 209 402 0 47 chr11 88138757 88138864 -62644689 - MIR SINE MIR -150 112 11 455 151 11 0 chr11 88139408 88139501 -62644052 + (TCTA)n Simple_repeat Simple_repeat 3 96 0 23 0 0 0 chr11 88139575 88139598 -62643955 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr11 88140967 88140989 -62642564 + AT_rich Low_complexity Low_complexity 1 22 0 211 336 160 0 chr11 88141424 88141549 -62642004 - MIR SINE MIR -116 146 2 22 70 0 0 chr11 88142596 88142639 -62640914 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr11 88143179 88143212 -62640341 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr11 88144097 88144118 -62639435 + AT_rich Low_complexity Low_complexity 1 21 0 2069 78 0 11 chr11 88144208 88144540 -62639013 + AluY SINE Alu 1 329 0 249 209 90 15 chr11 88145012 88145079 -62638474 - MER58A DNA MER1_type -3 221 150 379 258 31 10 chr11 88145103 88145200 -62638353 - MER58A DNA MER1_type -6 101 3 2769 224 43 5 chr11 88145534 88146141 -62637412 - MER82 DNA MER2_type -3 650 21 200 229 0 21 chr11 88146161 88146209 -62637344 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 386 333 86 11 chr11 88147055 88147241 -62636312 + MIR SINE MIR 57 256 -6 21 57 0 0 chr11 88147634 88147669 -62635884 + AT_rich Low_complexity Low_complexity 1 35 0 239 342 121 13 chr11 88147734 88147883 -62635670 + MER5A DNA MER1_type 16 180 -9 523 192 31 15 chr11 88148209 88148339 -62635214 + MER5A DNA MER1_type 58 189 0 849 288 47 0 chr11 88148492 88148728 -62634825 - MIR SINE MIR -3 259 13 225 333 11 68 chr11 88149311 88149488 -62634065 - MER5A DNA MER1_type -6 183 17 1331 162 18 0 chr11 88149644 88149872 -62633681 + Tigger3(Golem) DNA MER2_type 2798 3029 0 550 249 48 136 chr11 88149995 88150369 -62633184 - MLT1I LTR MaLR -1 408 68 420 253 143 33 chr11 88150851 88151033 -62632520 - MIR SINE MIR -12 250 49 318 267 95 9 chr11 88151524 88151629 -62631924 - L2 LINE L2 -1 3271 3158 248 381 84 44 chr11 88152036 88152403 -62631150 + L2 LINE L2 2891 3272 0 5553 35 0 6 chr11 88152519 88153197 -62630356 + L1PA3 LINE L1 5479 6152 -3 25 0 0 0 chr11 88155507 88155532 -62628021 + AT_rich Low_complexity Low_complexity 1 25 0 1088 241 13 4 chr11 88155716 88155953 -62627600 + Tigger5 DNA MER2_type 1 239 -2084 1386 143 17 4 chr11 88155954 88156185 -62627368 + Tigger5 DNA MER2_type 2090 2323 0 206 310 0 0 chr11 88156291 88156349 -62627204 - L2 LINE L2 -217 3055 2998 337 309 59 0 chr11 88156439 88156575 -62626978 + L2 LINE L2 2477 2620 -694 821 287 66 53 chr11 88156661 88157205 -62626348 - L1MC4 LINE L1 -146 7896 7346 822 92 0 0 chr11 88158123 88158253 -62625300 + (TAGA)n Simple_repeat Simple_repeat 3 132 0 287 373 68 0 chr11 88158439 88158557 -62624996 - MIR SINE MIR -124 138 13 671 289 58 18 chr11 88158701 88158926 -62624627 + MIR SINE MIR 28 261 -1 404 239 54 36 chr11 88160025 88160192 -62623361 - MER104 DNA Tc2 -1 179 10 23 0 0 0 chr11 88161430 88161453 -62622100 + AT_rich Low_complexity Low_complexity 1 23 0 284 271 0 0 chr11 88161821 88161906 -62621647 + MIR SINE MIR 177 261 -1 254 375 0 0 chr11 88162874 88162954 -62620599 + MIR SINE MIR 63 142 -120 450 350 100 14 chr11 88163672 88163892 -62619661 - MIR SINE MIR -4 258 20 356 203 13 0 chr11 88164012 88164091 -62619462 + MER116 DNA Mariner 1 80 0 322 377 50 5 chr11 88165082 88165302 -62618251 - MIR SINE MIR -20 242 13 397 282 44 44 chr11 88165520 88165701 -62617852 - MIR SINE MIR -61 201 21 208 352 88 0 chr11 88166139 88166230 -62617323 + MER5B DNA MER1_type 4 102 -76 1284 305 75 39 chr11 88166288 88166884 -62616669 + MLT2F LTR ERVL 3 620 -43 304 330 0 0 chr11 88166887 88166993 -62616560 + (TA)n Simple_repeat Simple_repeat 1 106 0 1371 164 112 18 chr11 88166993 88167279 -62616274 + MER7A DNA MER2_type 5 315 -31 2085 129 0 0 chr11 88167565 88167851 -62615702 - AluSx SINE Alu -7 305 20 12343 102 23 20 chr11 88168093 88169927 -62613626 + MER61C-int LTR ERV1 3370 5209 -8 2199 139 106 10 chr11 88169927 88170332 -62613221 + MER61C LTR ERV1 2 431 -3 218 238 48 48 chr11 88170358 88170442 -62613111 + MIR SINE MIR 179 262 0 195 129 0 0 chr11 88171521 88171552 -62612001 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 792 81 45 0 chr11 88171570 88171681 -62611872 - L1PA11 LINE L1 0 6174 6059 2226 90 20 8 chr11 88171686 88172085 -62611468 - LTR7 LTR ERV1 -2 448 1 3339 102 19 31 chr11 88172089 88172215 -62611338 - L1PA10 LINE L1 -113 6055 5930 975 256 46 39 chr11 88172215 88172653 -62610900 - L1MB4 LINE L1 -256 5924 5484 298 317 81 41 chr11 88172773 88172994 -62610559 + MIR SINE MIR 20 249 -13 227 326 126 26 chr11 88173415 88173605 -62609948 + L2 LINE L2 2843 3051 -221 195 270 32 0 chr11 88173662 88173725 -62609828 + L2 LINE L2 3208 3272 0 2254 121 0 6 chr11 88173932 88174246 -62609307 - AluSx SINE Alu 0 312 1 397 358 35 0 chr11 88174346 88174519 -62609034 - MIR SINE MIR 0 262 84 224 405 45 0 chr11 88175727 88175838 -62607715 - L2 LINE L2 -3 3269 3154 2095 175 160 95 chr11 88175843 88176619 -62606934 + LTR1B LTR ERV1 1 826 0 5516 59 211 76 chr11 88176649 88177682 -62605871 + MER11A LTR ERVK 1 1266 0 207 310 10 40 chr11 88177753 88177853 -62605700 - L2 LINE L2 -189 3083 2987 243 0 0 0 chr11 88178326 88178353 -62605200 + (A)n Simple_repeat Simple_repeat 1 27 0 2142 67 4 4 chr11 88179866 88180133 -62603420 + AluY SINE Alu 34 300 -11 306 353 65 18 chr11 88180619 88180897 -62602656 - L1ME4a LINE L1 -203 5918 5628 234 267 169 20 chr11 88181249 88181406 -62602147 - MIR SINE MIR -3 259 78 261 312 140 50 chr11 88183056 88183277 -62600276 - L2 LINE L2 -828 2486 2246 2060 92 50 0 chr11 88183401 88183682 -62599871 - AluSg SINE Alu -15 295 1 277 310 169 13 chr11 88185049 88185362 -62598191 + L2 LINE L2 2214 2575 -739 386 302 54 0 chr11 88185926 88186055 -62597498 + L3 LINE CR1 1343 1478 -99 284 236 11 0 chr11 88186897 88186986 -62596567 + (TTCA)n Simple_repeat Simple_repeat 3 92 0 778 121 128 14 chr11 88188390 88188531 -62595022 - AluSg/x SINE Alu 0 309 153 302 229 52 52 chr11 88188557 88188653 -62594900 - MIR SINE MIR -95 167 72 308 268 84 70 chr11 88188699 88188841 -62594712 - MIR SINE MIR -37 225 82 349 307 57 42 chr11 88188853 88189027 -62594526 - MIR SINE MIR -62 146 5 2492 52 0 10 chr11 88189074 88189381 -62594172 - AluY SINE Alu -7 304 1 1598 182 7 0 chr11 88189467 88189753 -62593800 - AluJb SINE Alu -24 288 1 267 330 54 0 chr11 88190193 88190305 -62593248 + MIR SINE MIR 95 212 -50 1303 223 70 40 chr11 88190346 88190817 -62592736 + Charlie4a DNA MER1_type 17 501 -7 199 292 56 0 chr11 88191397 88191469 -62592084 + MIR SINE MIR 97 172 -90 197 336 164 0 chr11 88191700 88191822 -62591731 + MIR SINE MIR 48 189 -73 370 284 55 0 chr11 88192268 88192377 -62591176 - MIR SINE MIR -91 171 57 22 0 0 0 chr11 88193303 88193325 -62590228 + AT_rich Low_complexity Low_complexity 1 22 0 258 81 0 0 chr11 88193588 88193625 -62589928 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 199 353 137 10 chr11 88193626 88193728 -62589825 - L2 LINE L2 -15 3298 3184 687 303 80 4 chr11 88194020 88194258 -62589295 - MIR SINE MIR -1 261 6 214 328 16 0 chr11 88194414 88194475 -62589078 - L2 LINE L2 -685 2629 2568 5426 94 15 9 chr11 88195812 88196622 -62586931 - L1PA10 LINE L1 -3 6165 5351 609 332 67 8 chr11 88197058 88197296 -62586257 + MIR SINE MIR 1 252 -10 185 362 14 0 chr11 88197314 88197383 -62586170 - L3 LINE CR1 -936 641 572 1669 165 38 32 chr11 88197439 88197808 -62585745 + THE1C LTR MaLR 5 375 0 2245 171 68 5 chr11 88197878 88198317 -62585236 + MLT1C LTR MaLR 1 467 0 21 36 0 0 chr11 88198530 88198558 -62584995 + AT_rich Low_complexity Low_complexity 1 28 0 233 204 0 0 chr11 88199761 88199805 -62583748 + CT-rich Low_complexity Low_complexity 1 44 0 2077 134 0 19 chr11 88200102 88200409 -62583144 - AluSx SINE Alu -7 305 5 408 357 56 26 chr11 88201197 88201463 -62582090 + MLT1J1 LTR MaLR 121 394 -52 2473 65 0 0 chr11 88202081 88202387 -62581166 - AluY SINE Alu -5 306 1 315 337 88 26 chr11 88203991 88204202 -62579351 + MIR3 SINE MIR 13 248 -14 21 57 0 0 chr11 88205793 88205828 -62577725 + AT_rich Low_complexity Low_complexity 1 35 0 1694 155 3 93 chr11 88206209 88206482 -62577071 - MER7A DNA MER2_type -2706 332 101 2358 71 0 3 chr11 88206482 88206776 -62576777 - AluY SINE Alu -18 293 1 1694 155 3 93 chr11 88206776 88206869 -62576684 - MER7A DNA MER2_type -2937 101 1 1364 222 24 47 chr11 88206918 88207301 -62576252 - MLT1A2 LTR MaLR 0 374 1 540 194 123 51 chr11 88207326 88207505 -62576048 - MLT1B LTR MaLR -188 186 1 36 77 0 0 chr11 88208084 88208162 -62575391 + AT_rich Low_complexity Low_complexity 1 78 0 261 313 0 0 chr11 88208480 88208576 -62574977 - L1MA9 LINE L1 -38 6274 6179 503 348 58 24 chr11 88208641 88208934 -62574619 + MER110-int LTR ERV1 2017 2319 -2328 2107 191 41 62 chr11 88209027 88209245 -62574308 + L1MB5 LINE L1 5641 5862 -312 1937 109 65 0 chr11 88209245 88209521 -62574032 + AluY SINE Alu 2 295 -16 2107 191 41 62 chr11 88209521 88209836 -62573717 + L1MB5 LINE L1 5862 6163 -11 774 321 37 40 chr11 88209838 88210240 -62573313 + MER110-int LTR ERV1 2388 2788 -1859 1124 298 81 68 chr11 88210624 88211457 -62572096 + L2 LINE L2 2283 3152 -161 187 328 33 16 chr11 88211499 88211560 -62571993 + L2 LINE L2 3184 3245 -27 1095 211 4 31 chr11 88213428 88213688 -62569865 - AluJo SINE Alu -1 311 59 221 163 0 23 chr11 88213739 88213782 -62569771 + (TG)n Simple_repeat Simple_repeat 2 43 0 861 101 114 0 chr11 88213897 88214055 -62569498 - L1P LINE L1 -739 5429 5254 4881 100 34 1 chr11 88214060 88214773 -62568780 + L1PA10 LINE L1 5433 6168 0 350 337 93 29 chr11 88214968 88215247 -62568306 - L1MC/D LINE L1 -2224 5561 5265 27 73 0 0 chr11 88215324 88215379 -62568174 + AT_rich Low_complexity Low_complexity 1 55 0 183 320 58 29 chr11 88215668 88215771 -62567782 + L2 LINE L2 2943 3048 -224 * 184 173 96 39 chr11 88215751 88215803 -62567750 - L3 LINE CR1 -293 1284 1230 695 148 0 0 chr11 88215950 88216065 -62567488 - AluSp/q SINE Alu -3 310 196 210 280 0 0 chr11 88216077 88216127 -62567426 + L2 LINE L2 3250 3299 -14 264 250 0 16 chr11 88216973 88217037 -62566516 - L2 LINE L2 -1 3312 3250 22 35 0 0 chr11 88217913 88217942 -62565611 + AT_rich Low_complexity Low_complexity 1 29 0 182 204 0 61 chr11 88217988 88218037 -62565516 + MIR SINE MIR 100 145 -117 1271 219 0 8 chr11 88218771 88219017 -62564536 + AluJb SINE Alu 1 244 -68 215 31 31 0 chr11 88219022 88219054 -62564499 + (CAA)n Simple_repeat Simple_repeat 2 34 0 228 398 11 11 chr11 88219135 88219228 -62564325 - MIR3 SINE MIR -110 98 6 2298 73 0 0 chr11 88219499 88219774 -62563779 + AluY SINE Alu 22 296 -15 267 279 16 33 chr11 88220441 88220563 -62562990 + MER94 DNA DNA 14 133 -1 349 339 6 36 chr11 88221417 88221585 -62561968 - MIR SINE MIR -87 175 13 204 40 0 0 chr11 88221775 88221800 -62561753 + (T)n Simple_repeat Simple_repeat 1 25 0 242 333 26 61 chr11 88222222 88222336 -62561217 + MIR SINE MIR 34 143 -119 1761 15 0 20 chr11 88222372 88222576 -62560977 + AluYa5 SINE Alu 107 306 -5 619 273 132 79 chr11 88222718 88223212 -62560341 - MLT2B1 LTR ERVL 0 520 1 196 349 28 28 chr11 88224184 88224290 -62559263 + MIR3 SINE MIR 72 177 -31 573 283 137 50 chr11 88224792 88225186 -62558367 - L1M4 LINE L1 -1745 4401 4043 1930 149 7 10 chr11 88225186 88225494 -62558059 - AluSx SINE Alu -5 307 1 573 283 137 50 chr11 88225494 88226056 -62557497 - L1M4 LINE L1 -2103 4043 3362 254 209 15 0 chr11 88227672 88227739 -62555814 + (TA)n Simple_repeat Simple_repeat 1 68 0 273 243 54 81 chr11 88228064 88228286 -62555267 - MER69 DNA AcHobo -3 2523 2308 37 52 0 0 chr11 88228294 88228352 -62555201 + AT_rich Low_complexity Low_complexity 1 58 0 24 67 0 0 chr11 88228368 88228413 -62555140 + AT_rich Low_complexity Low_complexity 1 45 0 1387 287 95 23 chr11 88228514 88229040 -62554513 - MER69 DNA AcHobo -1962 564 1 232 271 18 104 chr11 88231008 88231175 -62552378 + MIR SINE MIR 14 120 -88 191 321 117 41 chr11 88231672 88231868 -62551685 - L2 LINE L2 0 3313 3103 200 379 0 32 chr11 88233355 88233450 -62550103 + L2 LINE L2 3180 3271 -1 1286 204 67 25 chr11 88233983 88234268 -62549285 - AluJo SINE Alu -13 299 3 32 57 0 0 chr11 88234276 88234329 -62549224 + AT_rich Low_complexity Low_complexity 1 53 0 458 313 0 0 chr11 88235995 88236129 -62547424 - MIR SINE MIR -31 231 98 22 0 0 0 chr11 88236724 88236746 -62546807 + AT_rich Low_complexity Low_complexity 1 22 0 325 308 88 16 chr11 88237012 88237194 -62546359 - MIR SINE MIR -49 213 19 239 372 39 13 chr11 88237848 88238004 -62545549 - L2 LINE L2 -431 2883 2724 297 212 301 18 chr11 88238389 88238502 -62545051 - MIR SINE MIR -105 157 13 21 36 0 0 chr11 88238610 88238638 -62544915 + AT_rich Low_complexity Low_complexity 1 28 0 760 237 0 71 chr11 88239794 88240005 -62543548 + AluJo SINE Alu 86 281 -31 1247 166 49 86 chr11 88240082 88240510 -62543043 - Charlie1 DNA MER1_type 0 2761 2350 703 213 34 58 chr11 88241467 88241674 -62541879 + MER3 DNA MER1_type 8 209 0 2203 115 0 3 chr11 88241675 88241979 -62541574 - AluSp SINE Alu -10 303 1 4750 178 14 11 chr11 88242506 88243484 -62540069 - L1MB1 LINE L1 -1 6167 5184 2202 126 3 0 chr11 88243484 88243786 -62539767 - AluSx SINE Alu -9 303 1 4750 178 14 11 chr11 88243786 88244048 -62539505 - L1MB1 LINE L1 -984 5184 4924 273 261 60 8 chr11 88244579 88244713 -62538840 + L1ME LINE L1 5709 5849 -272 28 0 0 0 chr11 88244713 88244741 -62538812 + AT_rich Low_complexity Low_complexity 1 28 0 2205 107 3 3 chr11 88244822 88245120 -62538433 + AluSx SINE Alu 1 298 -14 38 22 0 0 chr11 88245249 88245294 -62538259 + AT_rich Low_complexity Low_complexity 1 45 0 1407 190 95 7 chr11 88245485 88245769 -62537784 - AluJo SINE Alu -3 309 1 2145 125 0 0 chr11 88246142 88246438 -62537115 + AluSg SINE Alu 1 296 -14 21 36 0 0 chr11 88246795 88246823 -62536730 + AT_rich Low_complexity Low_complexity 1 28 0 2396 76 0 13 chr11 88247349 88247663 -62535890 - AluY SINE Alu -1 310 1 197 33 33 0 chr11 88247824 88247854 -62535699 + (TAA)n Simple_repeat Simple_repeat 1 31 0 235 297 69 41 chr11 88248581 88248726 -62534827 + L2 LINE L2 2710 2858 -456 6861 59 10 2 chr11 88249644 88250618 -62532935 + L1PA7 LINE L1 5172 6152 -2 3899 86 16 0 chr11 88250966 88251511 -62532042 - MER41A LTR ERV1 0 554 1 964 180 77 10 chr11 88251546 88251740 -62531813 - MER6B DNA MER2_type -3 207 1 323 280 10 10 chr11 88252111 88252211 -62531342 + L1MC4 LINE L1 6604 6703 -1339 * 358 258 0 11 chr11 88252130 88252219 -62531334 - L1MC4 LINE L1 -1341 6701 6614 246 146 0 36 chr11 88252223 88252278 -62531275 - L1MC4 LINE L1 -1339 6703 6651 28 0 0 0 chr11 88253070 88253098 -62530455 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr11 88253453 88253481 -62530072 + AT_rich Low_complexity Low_complexity 1 28 0 497 119 22 172 chr11 88254626 88254760 -62528793 - L1PB4 LINE L1 -6 6150 6037 294 416 62 22 chr11 88255024 88255250 -62528303 + L2 LINE L2 2828 3062 -210 213 307 93 0 chr11 88255509 88255584 -62527969 + MIR SINE MIR 7 88 -174 287 225 50 100 chr11 88256486 88256543 -62527010 + MER5A DNA MER1_type 17 66 -123 2063 129 17 0 chr11 88256543 88256838 -62526715 + AluSp SINE Alu 1 300 -13 287 225 50 100 chr11 88256838 88256900 -62526653 + MER5A DNA MER1_type 66 130 -59 290 335 62 11 chr11 88257053 88257229 -62526324 - L3 LINE CR1 -58 1519 1335 411 313 34 29 chr11 88258477 88258685 -62524868 - L1MC4 LINE L1 -2036 5772 5564 3571 149 87 45 chr11 88259282 88260255 -62523298 - LTR12 LTR ERV1 0 2438 31 201 308 39 70 chr11 88261297 88261453 -62522100 - MIR SINE MIR -46 216 66 * 244 278 23 108 chr11 88261452 88261628 -62521925 - MIR3 SINE MIR -18 190 30 1994 152 10 0 chr11 88261887 88262196 -62521357 - AluSx SINE Alu 0 312 1 225 361 61 33 chr11 88262481 88262694 -62520859 - MIR SINE MIR 0 262 44 1782 171 10 13 chr11 88263623 88263932 -62519621 + AluSx SINE Alu 1 308 -4 180 383 43 31 chr11 88264159 88264321 -62519232 + MER5B DNA MER1_type 15 178 0 245 298 73 40 chr11 88264170 88264294 -62519259 - MER5A DNA MER1_type -23 166 39 331 164 47 141 chr11 88264630 88264758 -62518795 + MLT1H LTR MaLR 434 549 0 204 381 60 28 chr11 88264809 88264983 -62518570 + MIR SINE MIR 3 189 -73 510 69 0 92 chr11 88264983 88265070 -62518483 + MADE1 DNA Mariner 1 79 -1 204 381 60 28 chr11 88265070 88265144 -62518409 + MIR SINE MIR 189 259 -3 288 333 43 37 chr11 88265155 88265317 -62518236 - MIR SINE MIR -25 237 75 767 250 80 5 chr11 88265552 88265752 -62517801 - L1 LINE L1 -982 5164 4950 628 191 6 27 chr11 88265754 88265937 -62517616 + CT-rich Low_complexity Low_complexity 2 180 0 204 216 0 59 chr11 88265937 88265988 -62517565 + polypyrimidine Low_complexity Low_complexity 2 49 0 3316 207 28 38 chr11 88265992 88266891 -62516662 - L1 LINE L1 -1193 4953 4064 1776 201 53 34 chr11 88266887 88267822 -62515731 + L1MA10 LINE L1 5159 6299 -35 * 25 51 0 0 chr11 88267869 88267908 -62515645 + AT_rich Low_complexity Low_complexity 1 39 0 474 301 56 25 chr11 88268035 88268231 -62515322 + MIR SINE MIR 2 203 -59 214 368 0 0 chr11 88268891 88268967 -62514586 + L2 LINE L2 3199 3274 -39 826 255 90 135 chr11 88268981 88269639 -62513914 + MLT2E LTR ERVL 1 628 0 626 335 114 21 chr11 88270525 88270946 -62512607 + MLT1G1 LTR MaLR 112 571 -24 315 337 34 46 chr11 88271159 88271334 -62512219 + MIR SINE MIR 41 213 -49 234 105 0 0 chr11 88271622 88271660 -62511893 + (CA)n Simple_repeat Simple_repeat 2 39 0 192 125 0 0 chr11 88271933 88271965 -62511588 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 586 289 22 70 chr11 88272352 88272625 -62510928 + MIR SINE MIR 2 261 -1 406 286 19 0 chr11 88272735 88272840 -62510713 - MER5A DNA MER1_type -77 112 6 23 33 0 0 chr11 88273320 88273350 -62510203 + AT_rich Low_complexity Low_complexity 1 30 0 458 338 45 68 chr11 88274130 88274526 -62509027 + L2 LINE L2 2927 3313 0 5614 178 18 23 chr11 88275977 88277613 -62505940 + L1PB4 LINE L1 4165 5793 -363 270 0 0 0 chr11 88277613 88277643 -62505910 + (CA)n Simple_repeat Simple_repeat 2 31 0 5614 178 18 23 chr11 88277643 88278006 -62505547 + L1PB4 LINE L1 5793 6156 0 298 321 55 36 chr11 88278323 88278488 -62505065 + L2 LINE L2 2590 2757 -557 2278 102 3 6 chr11 88278511 88278825 -62504728 + AluSp SINE Alu 1 313 0 359 384 158 20 chr11 88278898 88279190 -62504363 + L2 LINE L2 2914 3245 -27 216 381 0 17 chr11 88279450 88279568 -62503985 - MIR SINE MIR -65 197 82 530 136 59 0 chr11 88279794 88279963 -62503590 + (TA)n Simple_repeat Simple_repeat 2 180 0 2740 110 20 10 chr11 88279964 88280364 -62503189 - MLT2A1 LTR ERVL -40 404 1 1189 216 26 4 chr11 88280522 88280754 -62502799 - MER8 DNA MER2_type -1 238 2 279 275 56 67 chr11 88282414 88282592 -62500961 + MIR SINE MIR 1 176 -86 387 0 0 0 chr11 88282605 88282648 -62500905 + (TG)n Simple_repeat Simple_repeat 2 44 0 431 319 145 10 chr11 88282768 88282975 -62500578 + MIR SINE MIR 14 248 -14 330 26 0 0 chr11 88282986 88283025 -62500528 + (CAT)n Simple_repeat Simple_repeat 2 40 0 202 200 100 40 chr11 88283081 88283131 -62500422 - L2 LINE L2 -31 3282 3230 219 359 75 0 chr11 88283563 88283669 -62499884 - MIR SINE MIR -79 129 16 2332 54 0 0 chr11 88284348 88284628 -62498925 - AluY SINE Alu 0 311 32 1242 237 44 24 chr11 88284896 88285372 -62498181 - Charlie1b DNA MER1_type 0 523 7 180 250 261 0 chr11 88288340 88288432 -62495121 - MIR SINE MIR -3 259 144 333 240 0 0 chr11 88288585 88288660 -62494893 - L2 LINE L2 0 3313 3239 210 250 73 118 chr11 88289202 88289338 -62494215 + MIR SINE MIR 77 206 -56 361 358 6 18 chr11 88289703 88289868 -62493685 - MIR3 SINE MIR -15 193 31 256 347 48 32 chr11 88290022 88290355 -62493198 - L3 LINE CR1 -859 718 324 395 372 94 36 chr11 88292410 88293157 -62490396 + L2 LINE L2 2434 3230 -42 22 0 0 0 chr11 88293176 88293198 -62490355 + AT_rich Low_complexity Low_complexity 1 22 0 669 267 11 0 chr11 88294312 88294488 -62489065 - MER5B DNA MER1_type 0 178 1 196 308 108 46 chr11 88294661 88294791 -62488762 + L2 LINE L2 2766 2903 -411 2132 283 67 37 chr11 88294807 88296706 -62486847 - L1MEc LINE L1 -2256 3959 2039 694 243 7 0 chr11 88297060 88297212 -62486341 + MSTD LTR MaLR 1 153 -243 833 100 8 0 chr11 88297300 88297420 -62486133 + FRAM SINE Alu 47 167 -9 288 0 0 0 chr11 88297855 88297887 -62485666 + (TG)n Simple_repeat Simple_repeat 2 33 0 1144 284 97 20 chr11 88298647 88299154 -62484399 + MLT1H LTR MaLR 1 546 -3 378 260 68 14 chr11 88299315 88299461 -62484092 + Charlie4a DNA MER1_type 203 356 -152 5503 50 0 1 chr11 88300154 88300835 -62482718 + L1PA7 LINE L1 5471 6150 -4 315 291 57 69 chr11 88300835 88301010 -62482543 + MLT1J1 LTR MaLR 1 173 -273 24 0 0 0 chr11 88301039 88301063 -62482490 + AT_rich Low_complexity Low_complexity 1 24 0 1869 90 0 4 chr11 88302206 88302462 -62481091 - L1PA8 LINE L1 -9 6163 5909 386 133 0 0 chr11 88302462 88302522 -62481031 + L1P LINE L1 5204 5263 -883 837 224 136 24 chr11 88302889 88303313 -62480240 + MLT1E3 LTR MaLR 69 624 0 25 0 0 0 chr11 88304491 88304516 -62479037 + AT_rich Low_complexity Low_complexity 1 25 0 431 291 60 40 chr11 88304731 88304930 -62478623 + MIR SINE MIR 55 257 -5 180 217 0 0 chr11 88304933 88304979 -62478574 + (ATG)n Simple_repeat Simple_repeat 2 47 0 302 301 40 106 chr11 88305632 88305934 -62477619 - L2 LINE L2 -2 3270 2989 1764 209 61 18 chr11 88306580 88306993 -62476560 - Charlie1b DNA MER1_type -2249 512 73 2374 74 0 10 chr11 88306993 88307304 -62476249 + AluY SINE Alu 1 308 -3 1764 209 61 18 chr11 88307304 88307379 -62476174 - Charlie1b DNA MER1_type -2688 73 3 800 186 35 145 chr11 88307381 88307747 -62475806 + LTR37B LTR ERV1 113 438 -30 3044 177 52 9 chr11 88307764 88308254 -62475299 - L1MA9 LINE L1 -8 6304 5778 330 26 0 0 chr11 88308254 88308293 -62475260 + (TG)n Simple_repeat Simple_repeat 2 40 0 3044 177 52 9 chr11 88308293 88308457 -62475096 - L1MA9 LINE L1 -534 5778 5622 1670 169 7 3 chr11 88308492 88308776 -62474777 + AluJb SINE Alu 1 285 -27 212 200 56 0 chr11 88308783 88308873 -62474680 + (TA)n Simple_repeat Simple_repeat 2 96 0 280 229 57 14 chr11 88308913 88308983 -62474570 - MIR SINE MIR -64 144 72 22 0 0 0 chr11 88309566 88309588 -62473965 + AT_rich Low_complexity Low_complexity 1 22 0 222 267 33 0 chr11 88309891 88309951 -62473602 + MER5A DNA MER1_type 49 110 -79 248 220 0 0 chr11 88310445 88310495 -62473058 + GA-rich Low_complexity Low_complexity 3 52 0 370 319 141 11 chr11 88310584 88310769 -62472784 + MIR SINE MIR 54 262 0 246 379 19 10 chr11 88311389 88311492 -62472061 + MIR SINE MIR 39 142 -120 706 294 15 5 chr11 88311761 88311965 -62471588 + MIR SINE MIR 18 223 -39 180 0 0 0 chr11 88311986 88312006 -62471547 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 317 277 65 103 chr11 88312921 88313105 -62470448 - MER5B DNA MER1_type 0 178 2 2238 95 0 0 chr11 88313302 88313606 -62469947 + AluY SINE Alu 1 304 -7 203 308 17 8 chr11 88313611 88313731 -62469822 + (TTCA)n Simple_repeat Simple_repeat 1 121 0 689 270 162 5 chr11 88314201 88314423 -62469130 + MIR SINE MIR 5 261 -1 22 0 0 0 chr11 88315062 88315084 -62468469 + AT_rich Low_complexity Low_complexity 1 22 0 294 327 60 73 chr11 88316026 88316176 -62467377 - L2 LINE L2 0 3272 3125 2346 175 29 7 chr11 88318770 88319187 -62464366 - MSTB LTR MaLR 0 426 1 321 122 0 0 chr11 88319295 88319344 -62464209 - FLAM_A SINE Alu 0 133 85 1002 173 49 0 chr11 88319344 88319432 -62464121 - AluJo SINE Alu -92 220 138 396 0 0 0 chr11 88319432 88319476 -62464077 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1002 173 49 0 chr11 88319476 88319572 -62463981 - AluJo SINE Alu -174 138 27 237 279 47 31 chr11 88319903 88320032 -62463521 + MER87 LTR ERV1 399 529 -12 1983 178 73 23 chr11 88320204 88320631 -62462922 + LOR1b LTR ERV1 14 461 0 239 250 171 0 chr11 88321418 88321494 -62462059 + MIR3 SINE MIR 94 182 -26 195 352 83 9 chr11 88323205 88323313 -62460240 - L3 LINE CR1 -1155 422 307 22 0 0 0 chr11 88323519 88323541 -62460012 + AT_rich Low_complexity Low_complexity 1 22 0 1824 284 32 23 chr11 88323630 88324216 -62459337 + MLT1E2 LTR MaLR 1 595 -31 6119 148 74 13 chr11 88324216 88324682 -62458871 - Tigger3b DNA MER2_type -1797 1231 795 2627 3 0 0 chr11 88324682 88325011 -62458542 - AluYa5 SINE Alu 0 329 1 6119 148 74 13 chr11 88325011 88325702 -62457851 - Tigger3b DNA MER2_type -2233 795 2 1824 284 32 23 chr11 88325702 88325735 -62457818 + MLT1E2 LTR MaLR 595 626 0 203 210 113 65 chr11 88325739 88325801 -62457752 - MIR SINE MIR -63 145 81 196 319 21 0 chr11 88325977 88326024 -62457529 - L2 LINE L2 -15 3257 3210 210 37 0 0 chr11 88326110 88326137 -62457416 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 906 156 7 0 chr11 88326137 88326272 -62457281 - AluJo/FRAM SINE Alu -29 283 148 505 206 21 0 chr11 88326272 88326369 -62457184 - AluJ/FLAM SINE Alu -213 99 1 443 338 54 33 chr11 88326542 88326782 -62456771 - MIR SINE MIR 0 262 18 709 277 35 0 chr11 88327394 88327596 -62455957 - MER6B DNA MER2_type -1 209 1 930 190 0 0 chr11 88327678 88327841 -62455712 - FRAM SINE Alu -16 160 1 229 301 41 0 chr11 88327907 88327980 -62455573 - MIR SINE MIR -95 167 92 1852 144 14 0 chr11 88327996 88328274 -62455279 + AluSx SINE Alu 1 282 -30 238 308 95 0 chr11 88328610 88328726 -62454827 - MIR SINE MIR -61 147 26 1008 120 69 0 chr11 88330164 88330339 -62453214 + L1MA5A LINE L1 6111 6297 0 218 337 59 0 chr11 88331894 88331995 -62451558 + MIR SINE MIR 65 171 -91 2246 137 25 6 chr11 88331995 88332352 -62451201 - THE1B LTR MaLR 0 364 1 264 250 0 16 chr11 88333273 88333337 -62450216 - L2 LINE L2 -1 3312 3250 22 35 0 0 chr11 88334213 88334242 -62449311 + AT_rich Low_complexity Low_complexity 1 29 0 182 204 0 61 chr11 88334288 88334337 -62449216 + MIR SINE MIR 100 145 -117 1271 219 0 8 chr11 88335071 88335317 -62448236 + AluJb SINE Alu 1 244 -68 215 31 31 0 chr11 88335322 88335354 -62448199 + (CAA)n Simple_repeat Simple_repeat 2 34 0 228 398 11 11 chr11 88335435 88335528 -62448025 - MIR3 SINE MIR -110 98 6 2128 85 0 0 chr11 88335799 88336059 -62447494 + AluY SINE Alu 22 281 -30 238 308 95 0 chr11 88336395 88336511 -62447042 - MIR SINE MIR -61 147 26 1008 120 69 0 chr11 88337950 88338125 -62445428 + L1MA5A LINE L1 6111 6297 0 218 337 59 0 chr11 88339680 88339781 -62443772 + MIR SINE MIR 65 171 -91 2246 137 25 6 chr11 88339781 88340138 -62443415 - THE1B LTR MaLR 0 364 1 984 219 62 0 chr11 88340664 88340794 -62442759 + L1MA9 LINE L1 6017 6138 -174 222 91 0 0 chr11 88340794 88340827 -62442726 + (CA)n Simple_repeat Simple_repeat 2 34 0 984 219 62 0 chr11 88340827 88340938 -62442615 + L1MA9 LINE L1 6138 6273 -39 507 168 0 0 chr11 88341038 88341157 -62442396 + (TAGA)n Simple_repeat Simple_repeat 2 120 0 183 350 68 0 chr11 88341334 88341451 -62442102 - MIR SINE MIR -12 250 126 470 330 109 0 chr11 88341675 88341896 -62441657 + MIR SINE MIR 12 256 -6 4559 149 24 39 chr11 88342877 88343871 -62439682 - MER11C LTR ERVK -4 1067 1 291 269 15 0 chr11 88344588 88344655 -62438898 + MER3 DNA MER1_type 46 113 -96 620 214 113 4 chr11 88344756 88344994 -62438559 + MER3 DNA MER1_type 2360 2623 0 1530 43 0 0 chr11 88345218 88345405 -62438148 + L1PA4 LINE L1 5966 6152 -3 361 373 37 22 chr11 88345625 88345955 -62437598 - L2 LINE L2 -220 3052 2719 294 293 53 68 chr11 88346134 88346267 -62437286 + L2 LINE L2 3123 3253 -19 294 29 0 0 chr11 88346276 88346311 -62437242 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr11 88347248 88347272 -62436281 + AT_rich Low_complexity Low_complexity 1 24 0 275 270 70 40 chr11 88348269 88348369 -62435184 + MIR SINE MIR 79 181 -81 237 343 14 0 chr11 88349044 88349117 -62434436 + L2 LINE L2 3233 3306 -7 213 171 24 0 chr11 88349265 88349306 -62434247 + MIR SINE MIR 68 109 -153 1183 232 37 66 chr11 88349320 88349700 -62433853 + MLT1A2 LTR MaLR 2 370 -4 2178 154 53 24 chr11 88349983 88350399 -62433154 - MSTA LTR MaLR 0 428 1 195 42 0 0 chr11 88350644 88350668 -62432885 + (TAA)n Simple_repeat Simple_repeat 1 24 0 458 159 26 9 chr11 88351495 88351608 -62431945 + CT-rich Low_complexity Low_complexity 3 117 0 185 280 237 0 chr11 88352306 88352399 -62431154 - L2 LINE L2 0 3313 3199 352 288 33 52 chr11 88352523 88352676 -62430877 - L2 LINE L2 -221 3051 2902 348 338 167 23 chr11 88353334 88353766 -62429787 - L2 LINE L2 0 3313 2820 2639 38 0 13 chr11 88353865 88354179 -62429374 + AluY SINE Alu 1 310 -1 225 0 0 0 chr11 88354298 88354323 -62429230 + (T)n Simple_repeat Simple_repeat 1 25 0 242 333 26 61 chr11 88354745 88354859 -62428694 + MIR SINE MIR 34 143 -119 1671 20 0 20 chr11 88354895 88355090 -62428463 + AluY SINE Alu 107 297 -14 863 254 30 37 chr11 88355090 88355385 -62428168 - L2 LINE L2 -618 2696 2404 345 47 0 0 chr11 88355809 88355852 -62427701 + (GA)n Simple_repeat Simple_repeat 2 44 0 1401 215 40 19 chr11 88355856 88356236 -62427317 + MER54B LTR ERVL 498 792 -1 6654 55 15 31 chr11 88356438 88357513 -62426040 + L1PA6 LINE L1 5093 6154 0 207 302 60 35 chr11 88357570 88357686 -62425867 + MIR SINE MIR 89 207 -55 189 237 0 0 chr11 88357744 88357803 -62425750 + (CATA)n Simple_repeat Simple_repeat 2 60 0 188 139 0 23 chr11 88358175 88358218 -62425335 + (TTTTC)n Simple_repeat Simple_repeat 2 43 0 650 282 54 54 chr11 88358422 88358935 -62424618 + L2 LINE L2 2740 3252 -61 1513 142 168 32 chr11 88358935 88359245 -62424308 + MSTA LTR MaLR 1 352 -76 189 0 0 0 chr11 88359246 88359267 -62424286 + (T)n Simple_repeat Simple_repeat 1 21 0 513 33 0 0 chr11 88359367 88359428 -62424125 + MSTA LTR MaLR 368 428 0 323 237 0 0 chr11 88359429 88359488 -62424065 + L2 LINE L2 3208 3266 -6 224 334 20 60 chr11 88360343 88360493 -62423060 - MIR SINE MIR -63 145 8 24 0 0 0 chr11 88361087 88361111 -62422442 + AT_rich Low_complexity Low_complexity 1 24 0 275 289 12 12 chr11 88361177 88361260 -62422293 + MIR SINE MIR 31 113 -95 482 281 106 32 chr11 88361387 88361604 -62421949 + MIR SINE MIR 20 252 -10 196 355 65 32 chr11 88361678 88361802 -62421751 + MIR SINE MIR 59 186 -76 243 0 0 0 chr11 88362280 88362307 -62421246 + (T)n Simple_repeat Simple_repeat 1 27 0 215 292 0 21 chr11 88362477 88362525 -62421028 - MIR SINE MIR -208 54 8 275 49 24 0 chr11 88363241 88363282 -62420271 + (TC)n Simple_repeat Simple_repeat 1 42 0 570 320 60 45 chr11 88364279 88364632 -62418921 + L2 LINE L2 2620 2977 -337 1192 171 14 0 chr11 88364803 88365014 -62418539 + Tigger1 DNA MER2_type 1771 1984 -434 1881 173 45 28 chr11 88365014 88365437 -62418116 - LTR23 LTR ERV1 0 437 8 2238 166 40 9 chr11 88365442 88365864 -62417689 + Tigger1 DNA MER2_type 1982 2416 -2 242 381 0 0 chr11 88365868 88365952 -62417601 + L2 LINE L2 3223 3306 -7 2018 143 0 0 chr11 88365952 88366245 -62417308 + AluSg SINE Alu 1 293 -17 247 245 0 0 chr11 88366298 88366351 -62417202 + MLT1K LTR MaLR 523 575 -13 2271 139 88 8 chr11 88366852 88367248 -62416305 + MSTA LTR MaLR 1 428 0 820 263 66 66 chr11 88367384 88367649 -62415904 + MLT1J LTR MaLR 1 268 -243 2183 135 119 8 chr11 88367649 88368034 -62415519 + MSTA LTR MaLR 1 428 0 820 263 66 66 chr11 88368034 88368235 -62415318 + MLT1J LTR MaLR 267 467 -44 196 286 0 18 chr11 88368523 88368579 -62414974 - L2 LINE L2 -95 3177 3123 2144 156 3 3 chr11 88368661 88368995 -62414558 - MER83C-int LTR ERV1 -22 4858 4525 1769 189 0 3 chr11 88369051 88369357 -62414196 + AluJb SINE Alu 3 307 -5 666 297 17 8 chr11 88369363 88369602 -62413951 - MER83C-int LTR ERV1 -3529 1425 1185 3688 250 51 25 chr11 88369779 88370478 -62413075 - MER83C-int LTR ERV1 -3872 1008 530 1883 136 0 4 chr11 88370478 88370793 -62412760 + AluSx SINE Alu 13 326 0 3688 250 51 25 chr11 88370793 88371293 -62412260 - MER83C-int LTR ERV1 -4350 530 44 1924 192 17 3 chr11 88371307 88371667 -62411886 - MER83C LTR ERV1 -4 369 5 21 0 0 0 chr11 88372303 88372324 -62411229 + AT_rich Low_complexity Low_complexity 1 21 0 236 355 77 41 chr11 88372789 88373009 -62410544 + MIR SINE MIR 29 256 -6 29 28 0 0 chr11 88373626 88373662 -62409891 + AT_rich Low_complexity Low_complexity 1 36 0 239 380 60 20 chr11 88373818 88373968 -62409585 + L2 LINE L2 3087 3242 -30 289 214 60 0 chr11 88374064 88374148 -62409405 - MER53 DNA DNA 0 189 101 248 396 25 15 chr11 88374807 88375009 -62408544 - L3 LINE CR1 -132 1445 1242 331 358 58 8 chr11 88375116 88375236 -62408317 + L2 LINE L2 3147 3272 0 323 269 25 42 chr11 88375337 88375456 -62408097 - L2 LINE L2 0 3272 3156 543 168 296 0 chr11 88375574 88375699 -62407854 - FRAM SINE Alu -18 158 1 1056 134 0 0 chr11 88426126 88426365 -62357188 + (TA)n Simple_repeat Simple_repeat 1 239 0 244 167 0 17 chr11 88426367 88426427 -62357126 + L1MCa LINE L1 2006 2064 -4362 210 118 0 0 chr11 88426427 88426461 -62357092 + (TA)n Simple_repeat Simple_repeat 1 34 0 226 139 0 0 chr11 88426462 88426505 -62357048 - LTR66 LTR ERVL -173 437 395 327 172 11 21 chr11 88426512 88426605 -62356948 + (TA)n Simple_repeat Simple_repeat 2 93 0 481 236 57 35 chr11 88426663 88426934 -62356619 + L1ME3 LINE L1 5260 5528 -636 342 45 0 0 chr11 88426981 88427025 -62356528 + (TC)n Simple_repeat Simple_repeat 1 44 0 1430 247 97 44 chr11 88427028 88427615 -62355938 + L1ME3 LINE L1 5538 6155 -7 185 257 0 0 chr11 88427726 88427761 -62355792 - MIR3 SINE MIR -21 187 153 351 342 16 57 chr11 88427762 88427955 -62355598 + MER5A DNA MER1_type 2 186 -3 328 324 66 16 chr11 88428094 88428276 -62355277 - MIR SINE MIR -71 191 1 14089 187 16 14 chr11 88428375 88432331 -62351222 - L1PA14 LINE L1 0 6161 2197 2117 128 7 0 chr11 88432713 88433098 -62350455 + AluSx SINE Alu 11 397 0 272 275 117 8 chr11 88433260 88433380 -62350173 - MIR SINE MIR -15 247 115 408 319 141 12 chr11 88434535 88434794 -62348759 + L2 LINE L2 2702 2992 -321 405 0 0 0 chr11 88435411 88435456 -62348097 + (CA)n Simple_repeat Simple_repeat 2 46 0 2787 173 69 0 chr11 88436074 88436582 -62346971 + Tigger3b DNA MER2_type 1 543 -688 1039 269 15 45 chr11 88436574 88436909 -62346644 + MLT1C LTR MaLR 143 467 0 * 547 300 83 16 chr11 88437023 88437276 -62346277 + L2 LINE L2 2944 3213 -100 43732 42 5 0 chr11 88437581 88443704 -62339849 - L1PA4 LINE L1 -8 6147 1 2134 111 7 0 chr11 88444284 88444581 -62338972 - AluY SINE Alu -12 299 1 474 118 26 0 chr11 88445833 88445909 -62337644 + MADE1 DNA Mariner 2 79 -1 307 279 25 0 chr11 88446369 88446448 -62337105 - MIR SINE MIR -126 136 56 1939 158 17 54 chr11 88447145 88447550 -62336003 + MLT1B LTR MaLR 1 390 0 31 44 0 0 chr11 88447658 88447703 -62335850 + AT_rich Low_complexity Low_complexity 1 45 0 885 234 20 0 chr11 88448033 88448230 -62335323 - MER3 DNA MER1_type -3 206 6 360 329 101 6 chr11 88448238 88448396 -62335157 + MIR SINE MIR 35 207 -55 244 352 62 23 chr11 88448985 88449113 -62334440 + L2 LINE L2 3138 3270 -2 515 341 33 14 chr11 88449407 88449621 -62333932 - MIR SINE MIR -23 239 22 257 296 62 0 chr11 88450825 88450906 -62332647 - L2 LINE L2 -14 3258 3173 34 24 0 0 chr11 88451039 88451080 -62332473 + AT_rich Low_complexity Low_complexity 1 41 0 556 342 62 25 chr11 88451401 88451641 -62331912 + MER115 DNA AcHobo 133 381 -312 533 349 38 4 chr11 88451673 88451908 -62331645 + MER115 DNA AcHobo 451 693 0 1978 231 16 36 chr11 88452078 88452579 -62330974 + MLT1D LTR MaLR 15 505 0 362 236 64 18 chr11 88453116 88453226 -62330327 + MER103 DNA DNA 50 164 -2 198 343 126 42 chr11 88453671 88453814 -62329739 - MIR3 SINE MIR -21 187 33 3060 159 18 7 chr11 88453901 88454798 -62328755 + L1PB4 LINE L1 4885 5792 -364 183 162 0 0 chr11 88454798 88454835 -62328718 + (CA)n Simple_repeat Simple_repeat 2 38 0 28 29 0 0 chr11 88455624 88455659 -62327894 + AT_rich Low_complexity Low_complexity 1 35 0 32 0 0 0 chr11 88460642 88460674 -62322879 + AT_rich Low_complexity Low_complexity 1 32 0 2526 110 5 3 chr11 88460708 88461080 -62322473 + L1PB4 LINE L1 5782 6154 -2 775 166 0 51 chr11 88461093 88461250 -62322303 - Tigger3(Golem) DNA MER2_type -2738 291 143 240 317 67 33 chr11 88461543 88461663 -62321890 - L2 LINE L2 -18 3295 3172 212 411 0 0 chr11 88462034 88462107 -62321446 + L2 LINE L2 3196 3268 -4 269 209 88 88 chr11 88462250 88462341 -62321212 + MIR SINE MIR 38 128 -80 335 318 18 9 chr11 88462802 88462912 -62320641 + LTR16C LTR ERVL 380 490 -1 270 408 48 0 chr11 88463519 88463644 -62319909 - L2 LINE L2 -26 3246 3116 3742 197 45 65 chr11 88463926 88464266 -62319287 + L1MC2 LINE L1 5323 5668 -676 990 191 148 34 chr11 88464266 88464590 -62318963 - MLT1A1 LTR MaLR 0 365 5 3742 197 45 65 chr11 88464590 88465264 -62318289 + L1MC2 LINE L1 5668 6317 -27 196 327 194 12 chr11 88465492 88465657 -62317896 - MIR SINE MIR -45 217 23 24 0 0 0 chr11 88466069 88466093 -62317460 + AT_rich Low_complexity Low_complexity 1 24 0 582 196 0 0 chr11 88466497 88466599 -62316954 - FLAM_A SINE Alu -5 137 36 1983 85 53 7 chr11 88466608 88466890 -62316663 - AluSc SINE Alu -14 295 1 196 336 76 23 chr11 88467681 88467812 -62315741 - L2 LINE L2 -324 2989 2852 212 330 43 26 chr11 88469646 88469761 -62313792 - MER5A DNA MER1_type -1 188 72 260 360 91 26 chr11 88469958 88470411 -62313142 - L3 LINE CR1 -856 721 240 5126 174 19 16 chr11 88470533 88471464 -62312089 + MSTA-int LTR MaLR 647 1580 0 2019 154 118 18 chr11 88471464 88471632 -62311921 + MSTA LTR MaLR 1 151 -277 233 29 29 0 chr11 88471632 88471666 -62311887 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2019 154 118 18 chr11 88471666 88471886 -62311667 + MSTA LTR MaLR 151 428 0 2694 137 12 53 chr11 88471886 88472466 -62311087 + L1MA7 LINE L1 5614 6145 -146 1895 195 63 22 chr11 88473990 88474401 -62309152 - MSTC LTR MaLR 0 428 1 208 274 0 27 chr11 88474658 88474731 -62308822 + CT-rich Low_complexity Low_complexity 3 73 0 1756 164 0 3 chr11 88475310 88475626 -62307927 + AluSx SINE Alu 1 315 0 22 0 0 0 chr11 88475686 88475708 -62307845 + AT_rich Low_complexity Low_complexity 1 22 0 589 307 50 18 chr11 88475884 88476102 -62307451 + MIR SINE MIR 12 236 -26 294 95 0 0 chr11 88476122 88476164 -62307389 + (TG)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr11 88476602 88476626 -62306927 + AT_rich Low_complexity Low_complexity 1 24 0 270 347 21 0 chr11 88477320 88477415 -62306138 - MIR3 SINE MIR -15 193 97 23 33 0 0 chr11 88478843 88478873 -62304680 + AT_rich Low_complexity Low_complexity 1 30 0 219 192 19 0 chr11 88478922 88478974 -62304579 + (TA)n Simple_repeat Simple_repeat 1 53 0 940 208 6 0 chr11 88479460 88479633 -62303920 - MER2 DNA MER2_type -171 174 1 223 158 18 18 chr11 88479633 88479690 -62303863 + (TG)n Simple_repeat Simple_repeat 2 58 0 6812 71 38 0 chr11 88480656 88481983 -62301570 - L1PA7 LINE L1 -3 6151 4801 2128 150 31 0 chr11 88482007 88482360 -62301193 + THE1B LTR MaLR 1 364 0 1679 174 27 3 chr11 88482695 88482994 -62300559 - AluJb SINE Alu -4 308 3 635 280 90 10 chr11 88483234 88483434 -62300119 + MIR SINE MIR 33 248 -14 708 200 0 0 chr11 88483594 88483774 -62299779 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 429 259 60 54 chr11 88483851 88484017 -62299536 + MIR SINE MIR 31 197 -65 452 177 62 21 chr11 88484024 88484120 -62299433 - MER82 DNA MER2_type -552 101 2 206 0 69 0 chr11 88484834 88484863 -62298690 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1494 178 10 45 chr11 88484866 88485158 -62298395 - AluJb SINE Alu -30 282 1 1707 187 60 3 chr11 88485174 88485543 -62298010 + MLT1B LTR MaLR 1 390 0 186 351 26 26 chr11 88485776 88485853 -62297700 - L2 LINE L2 -8 3264 3188 384 325 118 6 chr11 88486858 88487027 -62296526 + MIR SINE MIR 10 197 -65 389 312 38 25 chr11 88487185 88487342 -62296211 - MIR SINE MIR -85 177 19 809 164 249 0 chr11 88487582 88487771 -62295782 - MER46A DNA MER2_type 0 236 1 25 31 0 0 chr11 88487860 88487892 -62295661 + AT_rich Low_complexity Low_complexity 1 32 0 392 252 99 13 chr11 88489300 88489451 -62294102 + MER104 DNA Tc2 16 179 -1 454 206 19 75 chr11 88489526 88489633 -62293920 - MER5A DNA MER1_type 0 189 89 242 367 13 33 chr11 88490276 88490426 -62293127 + L2 LINE L2 3148 3294 -19 24 32 0 0 chr11 88491051 88491082 -62292471 + AT_rich Low_complexity Low_complexity 1 31 0 1816 153 56 19 chr11 88491538 88491897 -62291656 + THE1C LTR MaLR 1 372 -3 634 230 25 106 chr11 88492559 88492833 -62290720 + MIR SINE MIR 1 252 -10 216 345 204 0 chr11 88492922 88493035 -62290518 - L2 LINE L2 -1 3271 3136 319 292 108 49 chr11 88494773 88495218 -62288335 - L1ME4a LINE L1 -17 6104 5634 897 153 34 34 chr11 88495768 88495945 -62287608 + MLT2B3 LTR ERVL 1 177 -377 301 307 62 42 chr11 88497119 88497281 -62286272 - MIR SINE MIR -62 146 45 236 345 35 0 chr11 88498443 88498530 -62285023 + MIR SINE MIR 15 104 -158 303 374 18 6 chr11 88499309 88499480 -62284073 - MIR SINE MIR -14 248 76 268 347 167 28 chr11 88499762 88500013 -62283540 - L2 LINE L2 -20 3293 3008 25 0 0 0 chr11 88500467 88500492 -62283061 + AT_rich Low_complexity Low_complexity 1 25 0 293 379 59 20 chr11 88500504 88500657 -62282896 + MIR3 SINE MIR 28 186 -22 2257 100 3 10 chr11 88501849 88502158 -62281395 - AluSx SINE Alu -5 307 1 468 317 83 30 chr11 88502173 88502403 -62281150 - MIR SINE MIR -10 252 11 223 348 108 6 chr11 88503148 88503306 -62280247 + MIR SINE MIR 59 232 -30 21 57 0 0 chr11 88503712 88503747 -62279806 + AT_rich Low_complexity Low_complexity 1 35 0 330 312 95 59 chr11 88504176 88504265 -62279288 - MIR SINE MIR 0 262 178 252 0 0 0 chr11 88504265 88504293 -62279260 + (CA)n Simple_repeat Simple_repeat 1 28 0 330 312 95 59 chr11 88504293 88504309 -62279244 - MIR SINE MIR -84 178 164 183 42 0 0 chr11 88504309 88504333 -62279220 + (TTA)n Simple_repeat Simple_repeat 3 26 0 330 312 95 59 chr11 88504333 88504447 -62279106 - MIR SINE MIR -98 164 34 315 161 0 0 chr11 88505199 88505255 -62278298 + GA-rich Low_complexity Low_complexity 1 56 0 323 269 131 15 chr11 88505736 88505866 -62277687 + MIR SINE MIR 45 189 -73 620 212 0 0 chr11 88505955 88506073 -62277480 + FRAM SINE Alu 4 121 -55 1663 159 6 40 chr11 88506172 88506493 -62277060 - AluJo SINE Alu -2 310 1 186 133 0 0 chr11 88506589 88506619 -62276934 + (TG)n Simple_repeat Simple_repeat 2 31 0 3741 177 81 15 chr11 88507309 88508022 -62275531 + MER54B LTR ERVL 1 760 -33 1351 165 48 8 chr11 88508026 88508274 -62275279 - MSTB1 LTR MaLR 0 432 175 510 177 0 0 chr11 88508275 88508354 -62275199 + AluJb SINE Alu 212 290 -22 816 158 158 0 chr11 88508386 88508550 -62275003 - MSTB1 LTR MaLR -242 190 1 21 0 0 0 chr11 88509503 88509524 -62274029 + AT_rich Low_complexity Low_complexity 1 21 0 189 354 37 24 chr11 88509615 88509697 -62273856 - MIR SINE MIR -77 131 49 306 351 58 19 chr11 88510039 88510193 -62273360 + MIR SINE MIR 19 178 -84 418 279 132 71 chr11 88510304 88510684 -62272869 - MLT1K LTR MaLR -42 546 144 196 293 40 13 chr11 88511106 88511181 -62272372 + MIR SINE MIR 74 150 -112 186 297 16 31 chr11 88511382 88511446 -62272107 + MIR SINE MIR 106 168 -94 462 350 13 0 chr11 88512486 88512643 -62270910 - MIR SINE MIR -99 163 5 1939 152 0 29 chr11 88512673 88512989 -62270564 + AluSq SINE Alu 1 307 -6 21 0 0 0 chr11 88514254 88514275 -62269278 + AT_rich Low_complexity Low_complexity 1 21 0 204 97 0 0 chr11 88515574 88515605 -62267948 + (CA)n Simple_repeat Simple_repeat 2 32 0 24 91 0 0 chr11 88515805 88515871 -62267682 + AT_rich Low_complexity Low_complexity 1 66 0 24 0 0 0 chr11 88516139 88516163 -62267390 + AT_rich Low_complexity Low_complexity 1 24 0 1376 86 0 25 chr11 88516222 88516419 -62267134 - L1PA13 LINE L1 -21 6142 5951 6109 28 0 0 chr11 88516692 88517406 -62266147 - L1PA3 LINE L1 0 6155 5442 5180 24 0 0 chr11 88517406 88518061 -62265492 + L1P LINE L1 4772 5426 -729 251 383 78 28 chr11 88518075 88518255 -62265298 + MIR3 SINE MIR 16 204 -4 30 27 0 0 chr11 88518744 88518781 -62264772 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr11 88519043 88519064 -62264489 + AT_rich Low_complexity Low_complexity 1 21 0 726 199 7 0 chr11 88519098 88519239 -62264314 + MER97c DNA MER1_type? 460 601 -489 21 0 0 0 chr11 88519403 88519424 -62264129 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 88519620 88519642 -62263911 + AT_rich Low_complexity Low_complexity 1 22 0 192 40 0 0 chr11 88520132 88520157 -62263396 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 208 231 0 0 chr11 88521132 88521171 -62262382 - MIR SINE MIR -83 125 87 285 355 108 44 chr11 88521685 88521888 -62261665 - MIR SINE MIR -45 217 2 1373 265 66 26 chr11 88522219 88523040 -62260513 + MER45C DNA AcHobo 2 953 0 202 359 16 0 chr11 88523553 88523617 -62259936 - L2 LINE L2 -3 3269 3205 206 313 16 0 chr11 88523643 88523707 -62259846 - MIR SINE MIR -42 220 156 210 333 19 37 chr11 88524907 88525015 -62258538 - MIR SINE MIR -97 165 60 249 248 132 41 chr11 88525474 88525595 -62257958 - MIR SINE MIR -7 255 124 357 366 86 40 chr11 88525618 88526093 -62257460 - L2 LINE L2 0 3313 2817 37 0 0 0 chr11 88528126 88528163 -62255390 + AT_rich Low_complexity Low_complexity 1 37 0 375 127 0 0 chr11 88528438 88528501 -62255052 + (TG)n Simple_repeat Simple_repeat 2 64 0 580 332 81 53 chr11 88528701 88529135 -62254418 + L1MA5 LINE L1 1538 1983 -5503 11680 222 46 18 chr11 88529993 88532524 -62251029 + L1MA5 LINE L1 1897 4357 -3362 180 0 0 0 chr11 88532524 88532544 -62251009 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 11680 222 46 18 chr11 88532544 88533372 -62250181 + L1MA5 LINE L1 4357 5161 -2558 1711 168 18 0 chr11 88533372 88533684 -62249869 + AluSx SINE Alu 5 321 0 11680 222 46 18 chr11 88533684 88535912 -62247641 + L1MA5 LINE L1 5161 7709 -10 369 0 0 0 chr11 88535915 88535956 -62247597 + (CA)n Simple_repeat Simple_repeat 2 42 0 195 373 113 6 chr11 88537053 88537230 -62246323 - MIR SINE MIR -19 243 48 206 430 23 0 chr11 88537882 88538010 -62245543 - L2 LINE L2 -13 3259 3129 2123 125 3 0 chr11 88538378 88538683 -62244870 - AluSg SINE Alu -4 306 1 34 65 0 0 chr11 88538709 88538771 -62244782 + AT_rich Low_complexity Low_complexity 1 62 0 2420 163 14 25 chr11 88538835 88539271 -62244282 + Tigger2a DNA MER2_type 1 431 -3 291 335 50 34 chr11 88539599 88539778 -62243775 - MIR SINE MIR -7 255 74 1749 126 3 29 chr11 88539987 88540297 -62243256 - AluSx SINE Alu -10 302 1 2162 54 0 35 chr11 88540330 88540645 -62242908 + AluY SINE Alu 1 304 -7 245 267 8 25 chr11 88540777 88540897 -62242656 + AluY SINE Alu 184 301 0 261 343 0 0 chr11 88541144 88541214 -62242339 - L2 LINE L2 -14 3258 3189 327 390 32 5 chr11 88541448 88541638 -62241915 - L2 LINE L2 -433 2881 2687 1808 110 96 0 chr11 88542405 88542677 -62240876 - AluSq SINE Alu -15 298 1 182 362 21 11 chr11 88542869 88542963 -62240590 - MIR SINE MIR -78 184 90 579 254 0 83 chr11 88544045 88544250 -62239303 + MER5A DNA MER1_type 2 189 0 21 0 0 0 chr11 88544279 88544300 -62239253 + AT_rich Low_complexity Low_complexity 1 21 0 226 362 11 11 chr11 88544599 88544693 -62238860 - MIR3 SINE MIR -24 184 91 24 67 0 0 chr11 88545238 88545283 -62238270 + AT_rich Low_complexity Low_complexity 1 45 0 249 319 55 0 chr11 88545712 88545803 -62237750 - MIR SINE MIR -111 151 56 201 291 13 13 chr11 88545865 88545944 -62237609 + GA-rich Low_complexity Low_complexity 2 80 0 27 73 0 0 chr11 88546176 88546231 -62237322 + AT_rich Low_complexity Low_complexity 1 55 0 629 333 30 8 chr11 88547258 88547495 -62236058 - MIR SINE MIR 0 262 21 180 376 20 0 chr11 88547728 88547829 -62235724 + MIR SINE MIR 117 219 -43 21 57 0 19 chr11 88549539 88549575 -62233978 + AT_rich Low_complexity Low_complexity 1 37 -15 261 0 0 0 chr11 88549575 88549604 -62233949 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 57 0 19 chr11 88549604 88549620 -62233933 + AT_rich Low_complexity Low_complexity 37 52 0 468 339 100 35 chr11 88550179 88550498 -62233055 + L3 LINE CR1 435 774 -803 3909 87 24 0 chr11 88551815 88552356 -62231197 + MER41A LTR ERV1 1 554 0 25882 151 98 55 chr11 88552442 88558142 -62225411 + MER41A-int LTR ERV1 3 5944 -2 3759 111 9 2 chr11 88558142 88558692 -62224861 + MER41A LTR ERV1 1 554 0 181 224 45 0 chr11 88559484 88559551 -62224002 + GA-rich Low_complexity Low_complexity 4 73 0 27 0 0 0 chr11 88559935 88559962 -62223591 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr11 88560140 88560163 -62223390 + AT_rich Low_complexity Low_complexity 1 23 0 1450 187 7 39 chr11 88560163 88560473 -62223080 - AluJo SINE Alu -10 302 3 1732 139 0 86 chr11 88560797 88561134 -62222419 - AluSx SINE Alu -4 308 1 249 207 27 0 chr11 88562211 88562275 -62221278 + Alu SINE Alu 251 298 -4 279 0 0 0 chr11 88565411 88565442 -62218111 + (A)n Simple_repeat Simple_repeat 1 31 0 25 0 0 0 chr11 88565526 88565551 -62218002 + GC_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr11 88565680 88565707 -62217846 + (A)n Simple_repeat Simple_repeat 1 27 0 396 0 0 0 chr11 88566096 88566140 -62217413 + (TG)n Simple_repeat Simple_repeat 2 45 0 195 392 14 0 chr11 88566818 88566892 -62216661 + MIR SINE MIR 68 142 -66 181 269 39 0 chr11 88567294 88567346 -62216207 + MIR SINE MIR 20 73 -135 639 259 10 58 chr11 88567422 88567627 -62215926 - MIR SINE MIR -6 256 62 1128 309 64 25 chr11 88567653 88568407 -62215146 - L1MC4 LINE L1 -1 8041 7259 194 207 17 0 chr11 88568755 88568813 -62214740 + CT-rich Low_complexity Low_complexity 1 59 0 517 275 64 0 chr11 88568839 88568965 -62214588 + L1M4 LINE L1 3553 3694 -2452 261 0 0 0 chr11 88568965 88568994 -62214559 + (CA)n Simple_repeat Simple_repeat 2 30 0 517 275 64 0 chr11 88568994 88569038 -62214515 + L1M4 LINE L1 3694 3734 -2412 229 291 47 0 chr11 88569040 88569126 -62214427 + L1MC/D LINE L1 5782 5871 -371 * 470 310 145 36 chr11 88569123 88570217 -62213336 - L1M4 LINE L1 -1143 5003 4029 2054 183 55 5 chr11 88570217 88570621 -62212932 + MSTB LTR MaLR 3 426 0 470 310 145 36 chr11 88570621 88571411 -62212142 - L1M4 LINE L1 -2117 4029 2914 11750 240 27 25 chr11 88571417 88576580 -62206973 - L1PA16 LINE L1 -6 6863 1668 2037 159 120 5 chr11 88576915 88577299 -62206254 - MSTA LTR MaLR 0 428 1 8622 176 24 14 chr11 88577300 88578933 -62204620 - MSTA-int LTR MaLR -1 1650 1 1912 161 156 5 chr11 88578933 88579305 -62204248 - MSTA LTR MaLR 0 428 1 3232 222 39 24 chr11 88579530 88580282 -62203271 - L1PA16 LINE L1 -6086 763 1 1057 241 30 67 chr11 88580415 88580821 -62202732 - L1ME1 LINE L1 -45 6121 5731 1183 268 97 46 chr11 88580828 88581820 -62201733 + L1M4 LINE L1 4096 5137 -1009 195 146 0 0 chr11 88582276 88582317 -62201236 + (CA)n Simple_repeat Simple_repeat 2 42 0 327 25 0 0 chr11 88582407 88582447 -62201106 + (CA)n Simple_repeat Simple_repeat 1 40 0 961 280 34 19 chr11 88582456 88582834 -62200719 - L1ME4a LINE L1 -195 5926 5543 23 33 0 0 chr11 88583114 88583144 -62200409 + AT_rich Low_complexity Low_complexity 1 30 0 188 204 23 0 chr11 88583697 88583741 -62199812 - L2 LINE L2 -2 3311 3267 739 361 61 25 chr11 88584085 88584559 -62198994 - L2 LINE L2 -502 2812 2322 1448 212 38 70 chr11 88584949 88585450 -62198103 - L1ME4a LINE L1 -1254 4892 4408 31 0 0 0 chr11 88585527 88585558 -62197995 + AT_rich Low_complexity Low_complexity 1 31 0 1692 58 76 5 chr11 88585569 88585792 -62197761 - AluY SINE Alu -29 282 44 224 233 81 47 chr11 88585846 88585932 -62197621 + L2 LINE L2 3149 3237 -76 307 374 38 8 chr11 88586396 88586527 -62197026 + L2 LINE L2 3138 3272 0 858 278 59 33 chr11 88587070 88587556 -62195997 + L1MC/D LINE L1 3704 4206 -1940 1298 174 26 0 chr11 88587556 88587786 -62195767 - MER46A DNA MER2_type 0 236 1 858 278 59 33 chr11 88587786 88587821 -62195732 + L1MC/D LINE L1 4206 4239 -1907 288 232 110 12 chr11 88587834 88587916 -62195637 - Tigger7 DNA MER2_type -1 2490 2401 1725 158 9 8 chr11 88587924 88588386 -62195167 - Tigger7 DNA MER2_type -219 514 1 1320 305 75 30 chr11 88588398 88589276 -62194277 + L1MC/D LINE L1 4263 5197 -949 3194 185 20 3 chr11 88589276 88589870 -62193683 - MER6A DNA MER2_type -1 604 1 1320 305 75 30 chr11 88589870 88590045 -62193508 + L1MC/D LINE L1 5197 5363 -783 257 353 90 13 chr11 88590209 88590365 -62193188 + L1MC/D LINE L1 5487 5654 -2154 2534 93 20 18 chr11 88590510 88590908 -62192645 + L1MA2 LINE L1 5906 6304 0 24 0 0 0 chr11 88591314 88591338 -62192215 + AT_rich Low_complexity Low_complexity 1 24 0 226 327 88 0 chr11 88591863 88591976 -62191577 - MIR SINE MIR -11 251 129 295 276 0 31 chr11 88592105 88592203 -62191350 - L1PA15-16 LINE L1 -6740 109 15 377 276 55 28 chr11 88592203 88592348 -62191205 - LTR16A1 LTR ERVL -162 295 147 716 230 31 1 chr11 88592378 88592570 -62190983 - MLT1D LTR MaLR -78 427 247 2587 211 12 41 chr11 88592595 88593354 -62190199 + L1 LINE L1 2813 3549 -2597 1323 238 12 94 chr11 88643354 88643834 -62139719 - MLT1E2 LTR MaLR -185 441 1 25 0 0 0 chr11 88644240 88644265 -62139288 + AT_rich Low_complexity Low_complexity 1 25 0 2273 96 0 0 chr11 88645214 88645516 -62138037 - AluSg SINE Alu -8 302 1 28 0 0 0 chr11 88646142 88646170 -62137383 + AT_rich Low_complexity Low_complexity 1 28 0 540 72 12 0 chr11 88646170 88646253 -62137300 - L1P LINE L1 -801 5350 5267 * 4662 112 60 12 chr11 88646249 88647000 -62136553 + L1PB1 LINE L1 5361 6147 -4 30 0 0 0 chr11 88647000 88647030 -62136523 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr11 88647043 88647067 -62136486 + AT_rich Low_complexity Low_complexity 1 24 0 180 393 24 12 chr11 88647154 88647238 -62136315 - L2 LINE L2 -3 3269 3185 21 36 0 0 chr11 88647733 88647761 -62135792 + AT_rich Low_complexity Low_complexity 1 28 0 3837 243 48 6 chr11 88648136 88649144 -62134409 - Charlie1a DNA MER1_type -373 1082 33 504 301 29 43 chr11 88649285 88649494 -62134059 - MER63A DNA MER1_type 0 210 5 513 359 124 7 chr11 88650154 88650427 -62133126 + L2 LINE L2 2968 3272 0 26 50 0 0 chr11 88651847 88651887 -62131666 + AT_rich Low_complexity Low_complexity 1 40 0 256 307 108 40 chr11 88652122 88652298 -62131255 + MIR SINE MIR 62 249 -13 469 195 0 16 chr11 88652397 88652525 -62131028 + CT-rich Low_complexity Low_complexity 4 129 0 350 309 139 31 chr11 88652527 88652909 -62130644 - HAL1 LINE L1 -1205 1302 880 185 333 16 0 chr11 88653081 88653144 -62130409 + MIR SINE MIR 187 250 -12 205 75 50 25 chr11 88653883 88653923 -62129630 + A-rich Low_complexity Low_complexity 2 42 0 21 0 0 0 chr11 88653986 88654007 -62129546 + AT_rich Low_complexity Low_complexity 1 21 0 186 103 0 0 chr11 88654363 88654392 -62129161 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 26 0 0 0 chr11 88654669 88654695 -62128858 + AT_rich Low_complexity Low_complexity 1 26 0 28 48 0 0 chr11 88654955 88654997 -62128556 + AT_rich Low_complexity Low_complexity 1 42 0 1175 171 14 0 chr11 88655779 88655990 -62127563 + L1M1 LINE L1 5585 5798 -505 25 0 0 0 chr11 88656043 88656068 -62127485 + AT_rich Low_complexity Low_complexity 1 25 0 27 81 0 0 chr11 88656615 88656677 -62126876 + AT_rich Low_complexity Low_complexity 1 62 0 5657 93 18 50 chr11 88657012 88657919 -62125634 - L1PA8A LINE L1 0 6131 5254 4399 128 17 8 chr11 88657923 88658635 -62124918 + L1PA8A LINE L1 4510 5227 -919 3623 259 47 34 chr11 88659040 88661694 -62121859 - L1MCb LINE L1 -3466 3098 12 26 50 0 0 chr11 88661725 88661765 -62121788 + AT_rich Low_complexity Low_complexity 1 40 0 372 335 18 57 chr11 88661782 88662009 -62121544 - L1MCb LINE L1 -5488 419 202 882 258 64 37 chr11 88662093 88662467 -62121086 - MLT1B LTR MaLR 0 390 4 244 261 0 15 chr11 88662701 88662766 -62120787 - L1MCb LINE L1 -6344 82 19 240 310 14 14 chr11 88663025 88663096 -62120457 - MIR SINE MIR -66 142 72 289 239 92 27 chr11 88663268 88663427 -62120126 - MLT1L LTR MaLR -35 580 312 676 208 192 21 chr11 88663752 88663992 -62119561 + LTR50 LTR ERVL 10 290 -505 491 285 166 4 chr11 88664039 88664292 -62119261 + LTR50 LTR ERVL 387 680 -115 542 347 33 19 chr11 88664798 88665186 -62118367 + LTR16A LTR ERVL 16 449 -1 25 51 0 0 chr11 88665545 88665584 -62117969 + AT_rich Low_complexity Low_complexity 1 39 0 567 307 54 66 chr11 88665652 88666170 -62117383 + ERVL LTR ERVL 1025 1536 -4228 930 233 72 27 chr11 88666265 88666527 -62117026 - MLT1D LTR MaLR 0 505 232 811 250 166 16 chr11 88667127 88667579 -62115974 + L1MC4 LINE L1 7206 7725 -317 1430 174 51 14 chr11 88668150 88668426 -62115127 + AluJb SINE Alu 1 286 -26 294 91 23 0 chr11 88668636 88668680 -62114873 + MSTB1 LTR MaLR 1 45 -387 746 247 103 2 chr11 88668695 88668894 -62114659 - MLT1C LTR MaLR -108 359 153 405 285 64 17 chr11 88669023 88669258 -62114295 - L1MCa LINE L1 -4112 2452 2207 473 240 31 31 chr11 88669281 88669473 -62114080 - L1MCa LINE L1 -4423 2141 1950 2916 263 32 30 chr11 88669477 88670456 -62113097 - L1MCa LINE L1 -5022 1023 43 1874 151 0 20 chr11 88670527 88670831 -62112722 - AluJb SINE Alu -14 298 1 22 0 0 0 chr11 88673017 88673039 -62110514 + AT_rich Low_complexity Low_complexity 1 22 0 1557 221 29 3 chr11 88673087 88673394 -62110159 + L1M1 LINE L1 13 327 -7238 371 203 0 0 chr11 88673532 88673606 -62109947 + Charlie1 DNA MER1_type 2688 2761 0 297 0 0 0 chr11 88673645 88673678 -62109875 + (CA)n Simple_repeat Simple_repeat 1 33 0 209 326 124 0 chr11 88674312 88674401 -62109152 + MIR SINE MIR 54 153 -109 896 234 48 0 chr11 88675344 88675553 -62108000 + MER58B DNA MER1_type 123 341 0 211 211 0 0 chr11 88675598 88675636 -62107917 + (ATG)n Simple_repeat Simple_repeat 3 40 0 263 327 0 10 chr11 88676000 88676104 -62107449 + MLT1L LTR MaLR 149 251 -364 498 303 26 60 chr11 88676104 88676338 -62107215 + Zaphod DNA AcHobo 206 431 -3600 840 206 9 83 chr11 88676345 88676415 -62107138 - MLT1A1 LTR MaLR -154 211 137 2210 85 37 7 chr11 88676415 88676709 -62106844 - AluSq SINE Alu -10 303 1 840 206 9 83 chr11 88676709 88676866 -62106687 - MLT1A1 LTR MaLR -228 137 1 305 226 45 77 chr11 88677128 88677283 -62106270 - L1MC5 LINE L1 -302 7659 7510 737 216 54 22 chr11 88677397 88677582 -62105971 + MER3 DNA MER1_type 2 192 -17 1023 202 52 132 chr11 88677612 88677957 -62105596 - L1MC5 LINE L1 -544 7417 7147 2408 60 0 7 chr11 88677957 88678258 -62105295 - AluY SINE Alu -12 299 1 1023 202 52 132 chr11 88678258 88678566 -62104987 - L1MC5 LINE L1 -814 7147 6816 556 286 116 8 chr11 88678634 88678893 -62104660 + Zaphod DNA AcHobo 3744 4030 -1 186 361 42 42 chr11 88678951 88679117 -62104436 - MIR SINE MIR -50 212 47 21 0 0 0 chr11 88679252 88679273 -62104280 + AT_rich Low_complexity Low_complexity 1 21 0 1820 157 0 41 chr11 88679807 88680125 -62103428 - AluJb SINE Alu -6 306 2 214 231 0 0 chr11 88681151 88681190 -62102363 + (CA)n Simple_repeat Simple_repeat 1 39 0 1047 211 133 44 chr11 88681331 88681451 -62102102 - MER2 DNA MER2_type 0 345 237 3179 76 2 35 chr11 88681451 88681914 -62101639 + LTR7 LTR ERV1 1 448 -2 1047 211 133 44 chr11 88681914 88681948 -62101605 - MER2 DNA MER2_type -108 237 207 1723 201 68 25 chr11 88681948 88682390 -62101163 + MER65C LTR ERV1 1 461 0 1047 211 133 44 chr11 88682390 88682551 -62101002 - MER2 DNA MER2_type -138 207 1 369 261 17 34 chr11 88682604 88682723 -62100830 + MIR SINE MIR 53 169 -93 183 80 0 0 chr11 88683285 88683310 -62100243 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr11 88683977 88684002 -62099551 + AT_rich Low_complexity Low_complexity 1 25 0 327 221 58 155 chr11 88684390 88684648 -62098905 + Charlie2 DNA MER1_type 134 366 -2496 * 592 241 194 5 chr11 88684644 88685021 -62098532 + Charlie2 DNA MER1_type 2231 2678 -184 378 281 88 19 chr11 88685037 88685197 -62098356 - L1MDa LINE L1 -3742 2798 2628 1410 145 58 0 chr11 88685200 88685442 -62098111 + Tigger1 DNA MER2_type 1983 2238 -180 2057 130 0 3 chr11 88685577 88685869 -62097684 + AluSg SINE Alu 3 293 -17 276 214 86 60 chr11 88686223 88686340 -62097213 - L1MDa LINE L1 -4564 1976 1857 405 0 0 0 chr11 88686371 88686416 -62097137 + (CA)n Simple_repeat Simple_repeat 2 46 0 201 345 88 29 chr11 88687220 88687391 -62096162 + MIR SINE MIR 72 252 -10 705 339 93 50 chr11 88687616 88688497 -62095056 + L2 LINE L2 1934 2942 -372 234 128 0 0 chr11 88688605 88688644 -62094909 + (GAA)n Simple_repeat Simple_repeat 1 39 0 2153 82 3 23 chr11 88688659 88688965 -62094588 - AluY SINE Alu -6 305 6 518 226 0 35 chr11 88689158 88689273 -62094280 + MER63A DNA MER1_type 72 182 -28 238 227 0 15 chr11 88689608 88689674 -62093879 + (TA)n Simple_repeat Simple_repeat 2 66 0 477 62 0 0 chr11 88690479 88690544 -62093009 + (TG)n Simple_repeat Simple_repeat 1 65 0 232 317 58 36 chr11 88690828 88690968 -62092585 - MIR SINE MIR -64 144 9 211 310 138 9 chr11 88691161 88691277 -62092276 + MIR SINE MIR 2 132 -130 286 261 23 34 chr11 88692030 88692118 -62091435 - MIR SINE MIR -4 258 172 254 298 105 9 chr11 88692126 88692240 -62091313 + MIR SINE MIR 138 262 0 * 262 328 221 0 chr11 88692234 88692356 -62091197 - MIR SINE MIR -109 153 5 2233 101 3 3 chr11 88692376 88692683 -62090870 - AluSx SINE Alu -5 307 1 200 182 0 0 chr11 88692723 88692756 -62090797 + (CA)n Simple_repeat Simple_repeat 1 33 0 269 304 29 29 chr11 88694262 88694364 -62089189 - MIR SINE MIR -45 217 116 1175 182 5 0 chr11 88694611 88694820 -62088733 - MER2 DNA MER2_type -135 210 1 334 242 211 0 chr11 88695504 88695599 -62087954 - L2 LINE L2 0 3313 3199 774 306 73 14 chr11 88695762 88696037 -62087516 - L2 LINE L2 -458 2856 2566 9534 196 13 2 chr11 88697146 88698787 -62084766 + L1MA3 LINE L1 383 2042 -5523 3523 126 10 29 chr11 88698784 88699396 -62084157 + L1MA3 LINE L1 2556 3155 -4410 * 1184 249 7 18 chr11 88699397 88699709 -62083844 + AluJo SINE Alu 1 309 0 12771 187 42 12 chr11 88699715 88702598 -62080955 + L1MA3 LINE L1 3157 5951 -1773 180 0 0 0 chr11 88702598 88702618 -62080935 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 12771 187 42 12 chr11 88702618 88703486 -62080067 + L1MA3 LINE L1 5951 7050 -674 2187 123 0 0 chr11 88703486 88703786 -62079767 + AluSg SINE Alu 1 300 -10 12771 187 42 12 chr11 88703786 88704065 -62079488 + L1MA3 LINE L1 7050 7319 -405 360 129 16 0 chr11 88704229 88704291 -62079262 + L1MB8 LINE L1 6105 6167 -11 6825 242 67 30 chr11 88704435 88707463 -62076090 - L1MB8 LINE L1 -28 7569 4652 185 0 40 0 chr11 88707463 88707488 -62076065 + (TTA)n Simple_repeat Simple_repeat 2 27 0 6825 242 67 30 chr11 88707488 88707501 -62076052 - L1MB8 LINE L1 -2945 4652 4641 2207 100 0 0 chr11 88707501 88707782 -62075771 - AluY SINE Alu -30 281 1 6825 242 67 30 chr11 88707782 88708488 -62075065 - L1MB8 LINE L1 -2956 4641 3695 248 215 25 0 chr11 88708501 88708580 -62074973 - L1MB2 LINE L1 -10 6161 6081 1742 167 49 22 chr11 88708580 88708945 -62074608 + THE1C LTR MaLR 1 375 0 5120 163 23 58 chr11 88708947 88709106 -62074447 + THE1C-int LTR MaLR 3 166 -1414 1774 165 3 31 chr11 88709106 88709431 -62074122 - AluSx SINE Alu 0 317 1 5120 163 23 58 chr11 88709431 88710285 -62073268 + THE1C-int LTR MaLR 166 981 -599 * 15990 181 63 7 chr11 88710283 88713291 -62070262 - L1MB8 LINE L1 -4374 3191 15 1728 262 61 28 chr11 88713285 88713896 -62069657 - L1M4b LINE L1 -5397 1462 832 * 1731 225 25 89 chr11 88713898 88714490 -62069063 - MLT2B3 LTR ERVL 0 554 1 1001 332 78 46 chr11 88714514 88715185 -62068368 - L1M4b LINE L1 -6078 781 90 237 339 0 0 chr11 88715241 88715306 -62068247 - L1M4b LINE L1 -6791 68 4 373 94 0 62 chr11 88716259 88716364 -62067189 - Alu SINE Alu -17 283 230 226 393 73 0 chr11 88716604 88716754 -62066799 - L1M2 LINE L1 -6023 826 666 2265 138 11 8 chr11 88718339 88718700 -62064853 - THE1B LTR MaLR 0 364 3 23 54 0 0 chr11 88720190 88720227 -62063326 + AT_rich Low_complexity Low_complexity 1 37 0 705 239 43 32 chr11 88720757 88720945 -62062608 + MER58A DNA MER1_type 35 224 0 226 301 97 0 chr11 88720959 88721052 -62062501 + L2 LINE L2 3169 3270 -2 27 0 0 0 chr11 88721245 88721272 -62062281 + AT_rich Low_complexity Low_complexity 1 27 0 3526 156 63 67 chr11 88722918 88724257 -62059296 - LTR12 LTR ERV1 -21 1600 17 275 288 9 0 chr11 88724504 88724615 -62058938 + (TA)n Simple_repeat Simple_repeat 2 113 0 191 343 52 45 chr11 88724623 88724757 -62058796 + L2 LINE L2 3179 3313 0 256 303 0 11 chr11 88725131 88725220 -62058333 + GA-rich Low_complexity Low_complexity 2 89 0 23 33 0 0 chr11 88725285 88725315 -62058238 + AT_rich Low_complexity Low_complexity 1 30 0 224 327 39 67 chr11 88725739 88725947 -62057606 + L3 LINE CR1 1023 1224 -353 266 71 0 0 chr11 88726155 88726197 -62057356 - L1PA8 LINE L1 -1 6171 6130 800 117 0 15 chr11 88726212 88726349 -62057204 - L1PA8 LINE L1 -9 6163 6029 191 229 0 0 chr11 88726352 88726387 -62057166 - L3 LINE CR1 -13 1564 1530 463 162 0 36 chr11 88727959 88728070 -62055483 + CT-rich Low_complexity Low_complexity 3 109 0 813 130 0 0 chr11 88728080 88728195 -62055358 - FLAM_C SINE Alu -15 118 4 1640 188 36 21 chr11 88728658 88729042 -62054511 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr11 88729351 88729373 -62054180 + AT_rich Low_complexity Low_complexity 1 22 0 188 346 41 100 chr11 88729712 88729981 -62053572 + L2 LINE L2 2910 3162 -110 183 220 20 40 chr11 88730176 88730226 -62053327 - L2 LINE L2 0 3313 3265 222 37 0 0 chr11 88731067 88731094 -62052459 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 256 79 0 0 chr11 88731375 88731413 -62052140 + MADE1 DNA Mariner 1 38 -42 1717 173 24 65 chr11 88732055 88732110 -62051443 + MSTB LTR MaLR 71 127 -299 1902 141 32 37 chr11 88732110 88732485 -62051068 - THE1C LTR MaLR 0 375 3 8940 139 47 37 chr11 88732485 88734048 -62049505 - THE1C-int LTR MaLR 0 1580 1 1664 164 32 42 chr11 88734048 88734427 -62049126 - THE1C LTR MaLR 0 375 1 1717 173 24 65 chr11 88734427 88734502 -62049051 + MSTB LTR MaLR 125 201 -225 1996 138 7 3 chr11 88734502 88734793 -62048760 + AluSx SINE Alu 1 292 -20 1717 173 24 65 chr11 88734793 88735030 -62048523 + MSTB LTR MaLR 201 426 0 417 194 0 0 chr11 88735235 88735307 -62048246 - AluYb8 SINE Alu -204 114 43 4404 57 7 0 chr11 88735307 88735884 -62047669 - L1PA6 LINE L1 -260 5894 5314 22 0 0 0 chr11 88736511 88736533 -62047020 + AT_rich Low_complexity Low_complexity 1 22 0 374 303 102 79 chr11 88737145 88737526 -62046027 - L1M4 LINE L1 -3162 2984 2613 605 170 20 39 chr11 88737526 88737679 -62045874 - L1MA9 LINE L1 0 6312 6163 374 303 102 79 chr11 88737679 88737820 -62045733 - L1M4 LINE L1 -3533 2613 2477 3359 92 5 0 chr11 88737820 88738267 -62045286 - MLT2A2 LTR ERVL 0 453 5 374 303 102 79 chr11 88738267 88738450 -62045103 - L1M4 LINE L1 -3669 2477 2262 2375 158 9 32 chr11 88739649 88740087 -62043466 + MSTA LTR MaLR 1 428 0 24 32 0 0 chr11 88740129 88740160 -62043393 + AT_rich Low_complexity Low_complexity 1 31 0 1313 190 71 45 chr11 88740472 88740809 -62042744 + THE1C LTR MaLR 25 370 -5 9214 138 11 32 chr11 88740811 88742407 -62041146 + THE1C-int LTR MaLR 19 1580 0 1986 163 21 24 chr11 88742409 88742783 -62040770 + THE1C LTR MaLR 3 375 0 1371 158 3 115 chr11 88742829 88742983 -62040570 - MER4A LTR ERV1 0 664 565 2584 109 92 5 chr11 88742983 88743395 -62040158 + LTR7 LTR ERV1 1 448 -2 1371 158 3 115 chr11 88743395 88743570 -62039983 - MER4A LTR ERV1 -99 565 372 270 132 19 19 chr11 88743570 88743623 -62039930 - MER4A LTR ERV1 -351 313 261 21 0 0 0 chr11 88743722 88743743 -62039810 + AT_rich Low_complexity Low_complexity 1 21 0 456 284 226 5 chr11 88745150 88745358 -62038195 + MIR SINE MIR 1 254 -8 381 351 0 7 chr11 88745467 88745621 -62037932 + MER52A LTR ERV1 660 812 -943 1519 157 47 4 chr11 88745767 88746041 -62037512 + MER61D LTR ERV1 216 501 0 1799 96 42 8 chr11 88746971 88747318 -62036235 + LTR7 LTR ERV1 1 448 -2 30696 102 39 30 chr11 88747320 88752426 -62031127 + HERVH LTR ERV1 1 5149 -2564 1316 134 19 0 chr11 88752427 88752643 -62030910 + HERVH LTR ERV1 5600 5819 -1894 2305 88 48 13 chr11 88752643 88753020 -62030533 + HERVH LTR ERV1 7324 7713 0 2613 95 95 5 chr11 88753022 88753431 -62030122 + LTR7 LTR ERV1 3 448 -2 2460 129 18 67 chr11 88753441 88754057 -62029496 + MER4E LTR ERV1 1 766 0 2038 137 3 3 chr11 88754259 88754565 -62028988 - AluY SINE Alu -5 306 1 1401 82 6 3 chr11 88754693 88755031 -62028522 + L1PA10 LINE L1 5657 6105 -63 2100 164 5 23 chr11 88755031 88755422 -62028131 + L1PA15 LINE L1 5774 6157 -8 5544 124 11 12 chr11 88756596 88757617 -62025936 - L1PA15 LINE L1 -6 6159 5143 196 229 24 24 chr11 88757677 88757760 -62025793 + CT-rich Low_complexity Low_complexity 3 85 0 325 219 9 9 chr11 88758935 88759040 -62024513 + (TA)n Simple_repeat Simple_repeat 2 106 0 26 50 0 0 chr11 88759300 88759340 -62024213 + AT_rich Low_complexity Low_complexity 1 40 0 231 329 121 57 chr11 88759565 88759863 -62023690 + L3 LINE CR1 400 716 -861 2286 84 3 10 chr11 88759954 88760251 -62023302 - AluY SINE Alu -16 295 1 238 373 9 18 chr11 88760537 88760647 -62022906 + L2 LINE L2 2944 3052 -220 35 24 0 0 chr11 88760735 88760777 -62022776 + AT_rich Low_complexity Low_complexity 1 42 0 29 0 0 0 chr11 88761010 88761039 -62022514 + AT_rich Low_complexity Low_complexity 1 29 0 2233 188 31 5 chr11 88761152 88761567 -62021986 - MSTB LTR MaLR 0 426 1 265 250 89 40 chr11 88762213 88762337 -62021216 + L2 LINE L2 2929 3058 -214 399 294 68 18 chr11 88763160 88763323 -62020230 + MIR SINE MIR 51 221 -41 296 318 90 59 chr11 88763450 88763871 -62019682 + L2 LINE L2 2809 3242 -71 288 323 70 11 chr11 88764298 88764484 -62019069 + L1ME LINE L1 5522 5718 -403 25 0 0 0 chr11 88764643 88764668 -62018885 + AT_rich Low_complexity Low_complexity 1 25 0 596 201 19 58 chr11 88764997 88765151 -62018402 - MLT1E3 LTR MaLR -425 199 52 564 229 14 7 chr11 88765160 88765300 -62018253 - MLT2F LTR ERVL -522 141 1 24 0 0 0 chr11 88765323 88765347 -62018206 + AT_rich Low_complexity Low_complexity 1 24 0 639 174 23 0 chr11 88765479 88765611 -62017942 - L1PB4 LINE L1 0 6156 6022 240 306 148 0 chr11 88765611 88765719 -62017834 + L2 LINE L2 3190 3313 0 37 62 0 0 chr11 88766761 88766826 -62016727 + AT_rich Low_complexity Low_complexity 1 65 0 464 361 27 54 chr11 88767450 88767831 -62015722 - L2 LINE L2 -181 3091 2724 1054 67 0 0 chr11 88768378 88768513 -62015040 - L1PA7 LINE L1 -8 6146 6012 1905 94 26 8 chr11 88768513 88768779 -62014774 - AluSq SINE Alu -41 272 2 649 142 83 8 chr11 88768981 88769101 -62014452 - THE1C LTR MaLR -246 129 1 560 241 54 6 chr11 88769111 88769277 -62014276 + L1ME3A LINE L1 5988 6161 -9 2182 92 17 0 chr11 88769326 88769621 -62013932 + AluSg SINE Alu 2 301 -9 190 328 0 0 chr11 88769621 88769678 -62013875 + L2 LINE L2 3252 3308 -5 23 33 0 0 chr11 88770634 88770664 -62012889 + AT_rich Low_complexity Low_complexity 1 30 0 9138 197 22 18 chr11 88771489 88775348 -62008205 + L1MA4A LINE L1 1036 6899 -106 2399 127 3 11 chr11 88775348 88775726 -62007827 + THE1C LTR MaLR 1 375 0 9138 197 22 18 chr11 88775726 88775828 -62007725 + L1MA4A LINE L1 6899 6999 -6 330 284 17 52 chr11 88775842 88775958 -62007595 - MIR SINE MIR -149 113 2 5706 162 24 10 chr11 88776822 88778390 -62005163 - L1MA3 LINE L1 0 6305 4713 265 304 38 0 chr11 88778480 88778559 -62004994 + L2 LINE L2 2976 3057 -215 438 367 33 0 chr11 88778736 88778916 -62004637 - MIR SINE MIR -12 250 65 2103 130 10 0 chr11 88779398 88779705 -62003848 + AluSg SINE Alu 1 310 0 478 241 94 24 chr11 88779773 88779943 -62003610 - LTR16C LTR ERVL -1 490 309 249 391 15 23 chr11 88780228 88780361 -62003192 - L2 LINE L2 -217 3055 2924 2639 83 11 0 chr11 88780609 88780959 -62002594 - THE1A LTR MaLR -1 354 1 513 293 103 67 chr11 88781090 88781486 -62002067 - MLT1H LTR MaLR -2 547 134 336 48 0 0 chr11 88781486 88781528 -62002025 + (CA)n Simple_repeat Simple_repeat 1 42 0 513 293 103 67 chr11 88781528 88781547 -62002006 - MLT1H LTR MaLR -415 134 117 24 32 0 0 chr11 88781630 88781661 -62001892 + AT_rich Low_complexity Low_complexity 1 31 0 227 319 121 9 chr11 88782451 88782567 -62000986 - L3 LINE CR1 -28 1549 1421 2046 196 6 17 chr11 88783522 88784220 -61999333 - L1MA4 LINE L1 -725 5575 4880 3524 172 24 10 chr11 88784220 88784916 -61998637 + L1MA4 LINE L1 5576 6288 -12 2769 7 0 0 chr11 88785859 88786162 -61997391 - AluYa5 SINE Alu -8 303 1 23 0 0 0 chr11 88786542 88786565 -61996988 + AT_rich Low_complexity Low_complexity 1 23 0 2619 172 23 70 chr11 88786567 88787207 -61996346 + L1MA3 LINE L1 5696 6305 0 345 347 48 48 chr11 88787743 88788133 -61995420 + L1MEd LINE L1 1181 1510 -4862 249 304 24 32 chr11 88788154 88788279 -61995274 + HAL1 LINE L1 1487 1610 -897 25 0 0 0 chr11 88788296 88788321 -61995232 + AT_rich Low_complexity Low_complexity 1 25 0 586 271 121 61 chr11 88788983 88789445 -61994108 + L1MEd LINE L1 2469 2958 -3424 462 302 39 28 chr11 88789826 88789977 -61993576 - MIR SINE MIR -71 191 36 275 83 0 21 chr11 88789977 88790025 -61993528 + (TA)n Simple_repeat Simple_repeat 2 48 0 462 302 39 28 chr11 88790025 88790055 -61993498 - MIR SINE MIR -226 36 8 1267 203 5 0 chr11 88790943 88791165 -61992388 - Tigger3(Golem) DNA MER2_type -2806 223 1 541 143 0 0 chr11 88791715 88791799 -61991754 - AluJ/FLAM SINE Alu -227 85 2 618 235 86 16 chr11 88792910 88793156 -61990397 - L1ME2 LINE L1 -1 6169 5907 541 234 15 15 chr11 88793154 88793291 -61990262 + L1MEc LINE L1 35 171 -6225 * 2958 193 68 3 chr11 88793294 88793885 -61989668 + MER73 LTR ERVL 16 644 0 2907 292 76 30 chr11 88793886 88795461 -61988092 + L1MEc LINE L1 172 1819 -4577 505 228 95 6 chr11 88795487 88795645 -61987908 + L1MC4a LINE L1 7350 7521 -287 268 296 53 29 chr11 88795640 88795846 -61987707 - L1MEc LINE L1 -4072 2324 2114 * 470 297 122 42 chr11 88796391 88796825 -61986728 - L1MC4 LINE L1 -8 8034 7566 351 244 0 12 chr11 88796859 88796941 -61986612 + MLT1E2 LTR MaLR 18 98 -528 4355 162 17 1 chr11 88796941 88797686 -61985867 + Tigger2 DNA MER2_type 1 757 -1961 1376 191 8 8 chr11 88797739 88797985 -61985568 + Tigger2 DNA MER2_type 2473 2718 0 782 271 48 35 chr11 88797985 88798297 -61985256 + MLT1E2 LTR MaLR 97 412 -214 2275 194 84 10 chr11 88798298 88798809 -61984744 + MER54A LTR ERVL 1 350 -294 21 0 0 0 chr11 88798963 88798984 -61984569 + AT_rich Low_complexity Low_complexity 1 21 0 7785 183 18 17 chr11 88799677 88799746 -61983807 - L1 LINE L1 -1294 4852 4785 1056 102 0 13 chr11 88799746 88799903 -61983650 - L1PA8 LINE L1 0 6172 6018 7785 183 18 17 chr11 88799903 88801438 -61982115 - L1 LINE L1 -1361 4785 3246 3438 168 20 62 chr11 88801459 88802630 -61980923 + L1MA5 LINE L1 4887 6012 -288 4084 153 33 34 chr11 88802651 88803318 -61980235 + Tigger3(Golem) DNA MER2_type 2190 2857 -171 1107 162 56 5 chr11 88803318 88803534 -61980019 - MER30 DNA MER1_type 0 230 4 4084 153 33 34 chr11 88803534 88803689 -61979864 + Tigger3(Golem) DNA MER2_type 2857 3011 -17 1883 143 0 3 chr11 88803692 88803985 -61979568 + AluSx SINE Alu 6 297 -15 647 107 0 10 chr11 88803985 88804088 -61979465 + (GGAA)n Simple_repeat Simple_repeat 1 102 0 361 291 98 77 chr11 88804191 88804631 -61978922 - L1MEc LINE L1 -5238 967 519 2422 84 0 3 chr11 88804790 88805110 -61978443 - L1PA10 LINE L1 -369 5799 5481 2569 94 5 5 chr11 88805110 88805480 -61978073 + L1PA10 LINE L1 5793 6163 -5 24 0 0 0 chr11 88805481 88805505 -61978048 + AT_rich Low_complexity Low_complexity 1 24 0 279 296 35 14 chr11 88805604 88805746 -61977807 + L1MC4a LINE L1 5588 5732 -2076 401 266 75 23 chr11 88805753 88805967 -61977586 + L1MC4a LINE L1 5770 5994 -1814 240 267 33 0 chr11 88806430 88806520 -61977033 + (TA)n Simple_repeat Simple_repeat 2 94 0 180 0 0 0 chr11 88807100 88807120 -61976433 + (TTA)n Simple_repeat Simple_repeat 1 20 0 210 260 0 0 chr11 88807432 88807505 -61976048 + (TA)n Simple_repeat Simple_repeat 2 74 0 414 85 0 0 chr11 88808251 88808310 -61975243 + (TC)n Simple_repeat Simple_repeat 2 60 0 422 39 0 0 chr11 88808588 88808640 -61974913 + MADE1 DNA Mariner 29 80 0 2021 124 137 11 chr11 88808766 88809145 -61974408 - MSTA LTR MaLR 0 428 2 2430 229 76 105 chr11 88809254 88809835 -61973718 - L1MC3 LINE L1 -20 7765 7162 303 243 14 0 chr11 88809835 88809905 -61973648 - MLT1F1 LTR MaLR -465 102 32 2430 229 76 105 chr11 88809905 88810418 -61973135 - L1MC3 LINE L1 -623 7162 6636 1004 272 42 0 chr11 88811024 88811307 -61972246 + LTR43 LTR ERV1 186 480 -122 314 357 0 16 chr11 88811942 88812068 -61971485 + L3 LINE CR1 1367 1490 -87 194 316 32 42 chr11 88812189 88812284 -61971269 - MIR3 SINE MIR -28 180 87 247 303 66 40 chr11 88813478 88813630 -61969923 - MIR SINE MIR -41 221 66 28 71 0 0 chr11 88814560 88814616 -61968937 + AT_rich Low_complexity Low_complexity 1 56 0 768 358 104 19 chr11 88816093 88816739 -61966814 + L2 LINE L2 2236 2936 -378 27 29 0 0 chr11 88818493 88818527 -61965026 + AT_rich Low_complexity Low_complexity 1 34 0 35 41 0 0 chr11 88819002 88819051 -61964502 + AT_rich Low_complexity Low_complexity 1 49 0 249 57 0 0 chr11 88819445 88819480 -61964073 + (T)n Simple_repeat Simple_repeat 1 35 0 1283 113 0 0 chr11 88819499 88819667 -61963886 - AluSq SINE Alu -143 170 3 846 189 165 0 chr11 88820800 88821006 -61962547 - MLT1F1 LTR MaLR 0 567 328 494 307 101 5 chr11 88821004 88821193 -61962360 - MLT1F1 LTR MaLR -335 207 1 * 773 196 9 84 chr11 88821702 88821927 -61961626 - MER3 DNA MER1_type -1 208 1 210 373 117 23 chr11 88822299 88822650 -61960903 + L2 LINE L2 2578 2961 -353 255 239 0 0 chr11 88822911 88822978 -61960575 + (TGAA)n Simple_repeat Simple_repeat 3 69 0 2113 113 7 0 chr11 88823816 88824109 -61959444 - AluSc SINE Alu -14 295 1 285 303 94 36 chr11 88824787 88825064 -61958489 - L1MC4a LINE L1 -1903 5905 5613 213 378 61 0 chr11 88825076 88825158 -61958395 - MER91C DNA MER1_type -32 108 22 447 289 59 13 chr11 88825193 88825345 -61958208 - MIR SINE MIR -25 237 79 330 67 0 0 chr11 88827023 88827068 -61956485 + (GA)n Simple_repeat Simple_repeat 2 46 0 641 253 54 0 chr11 88827609 88827829 -61955724 + FRAM SINE Alu 1 228 0 230 311 98 8 chr11 88828425 88828547 -61955006 + MIR3 SINE MIR 75 207 -1 339 286 11 0 chr11 88828639 88828730 -61954823 - MIR SINE MIR -1 261 170 251 308 159 11 chr11 88829026 88829202 -61954351 - MIR SINE MIR -15 247 40 3119 143 12 0 chr11 88829373 88829864 -61953689 + LOR1a LTR ERV1 1 497 0 353 179 6 122 chr11 88830429 88830585 -61952968 + L1M4 LINE L1 4866 5003 -1143 21 0 0 0 chr11 88830662 88830683 -61952870 + AT_rich Low_complexity Low_complexity 1 21 0 375 23 0 0 chr11 88830789 88830833 -61952720 + (CA)n Simple_repeat Simple_repeat 2 45 0 379 256 23 15 chr11 88831927 88832060 -61951493 + MER63 DNA MER1_type 923 1056 -6 240 133 0 44 chr11 88832066 88832111 -61951442 + Charlie1 DNA MER1_type 2671 2713 -48 1434 218 34 3 chr11 88832135 88832456 -61951097 - L1MA4A LINE L1 -14 6289 5959 * 9374 215 40 76 chr11 88832451 88832967 -61950586 - L1M2 LINE L1 -4150 2699 2166 351 0 0 0 chr11 88832967 88833006 -61950547 + (TTA)n Simple_repeat Simple_repeat 1 39 0 9374 215 40 76 chr11 88833006 88835288 -61948265 - L1M2 LINE L1 -4683 2166 2 200 287 56 37 chr11 88836006 88836114 -61947439 - L2 LINE L2 -251 3062 2953 233 323 25 33 chr11 88836514 88836665 -61946888 + MIR SINE MIR 3 151 -65 520 272 109 0 chr11 88836680 88836827 -61946726 - MER5A DNA MER1_type -26 163 1 866 227 11 35 chr11 88837732 88837992 -61945561 + L1M4 LINE L1 2575 2828 -3318 * 27208 44 46 2 chr11 88837991 88841517 -61942036 + L1P LINE L1 729 4410 -1736 509 308 148 9 chr11 88841514 88841832 -61941721 + L1M4 LINE L1 3510 3871 -2275 * 865 201 118 40 chr11 88841828 88842132 -61941421 + L1M4 LINE L1 4533 4860 -1286 464 236 107 0 chr11 88842133 88842273 -61941280 + L1MA10 LINE L1 6178 6332 -2 392 268 20 71 chr11 88842435 88842594 -61940959 + MIR SINE MIR 6 155 -67 198 296 37 37 chr11 88842646 88842754 -61940799 + MIR SINE MIR 95 202 -60 227 312 11 43 chr11 88842861 88842954 -61940599 - MIR3 SINE MIR -17 191 102 372 286 150 0 chr11 88843815 88843962 -61939591 - MIR SINE MIR -21 241 73 23 68 0 0 chr11 88844020 88844064 -61939489 + AT_rich Low_complexity Low_complexity 1 44 0 451 327 28 38 chr11 88844998 88845316 -61938237 + MLT1H LTR MaLR 234 548 -1 2442 85 43 8 chr11 88845775 88846127 -61937426 + THE1B LTR MaLR 1 364 0 1357 179 28 39 chr11 88846984 88847269 -61936284 + MER7A DNA MER2_type 2 281 -65 506 206 11 0 chr11 88847313 88847405 -61936148 + MER7A DNA MER2_type 254 346 0 287 371 89 30 chr11 88847507 88847709 -61935844 + MIR SINE MIR 6 219 -43 1395 189 60 29 chr11 88847731 88848012 -61935541 + AluJo SINE Alu 4 293 -19 234 0 0 0 chr11 88848012 88848038 -61935515 + (TA)n Simple_repeat Simple_repeat 2 27 0 378 0 0 0 chr11 88848964 88849006 -61934547 + (TG)n Simple_repeat Simple_repeat 2 43 0 458 293 12 144 chr11 88849006 88849262 -61934291 - MIR SINE MIR -3 259 38 273 264 234 15 chr11 88849372 88849525 -61934028 - MIR3 SINE MIR -25 183 2 186 143 0 0 chr11 88849908 88849943 -61933610 + (TTTTTG)n Simple_repeat Simple_repeat 4 38 0 384 336 14 0 chr11 88850590 88850730 -61932823 - MIR SINE MIR -2 260 119 237 33 0 0 chr11 88850732 88850762 -61932791 + (TTA)n Simple_repeat Simple_repeat 1 30 0 284 362 99 23 chr11 88850991 88851212 -61932341 + MIR SINE MIR 25 262 0 236 331 98 33 chr11 88851567 88851751 -61931802 - L2 LINE L2 -672 2642 2447 190 349 136 30 chr11 88851932 88852064 -61931489 - MIR3 SINE MIR -58 150 5 21 0 0 0 chr11 88852253 88852274 -61931279 + AT_rich Low_complexity Low_complexity 1 21 0 265 284 52 43 chr11 88852312 88852428 -61931125 - MIR SINE MIR -98 164 48 2751 285 81 14 chr11 88852731 88853837 -61929716 + L1MEc LINE L1 130 1308 -5088 852 289 46 20 chr11 88853884 88854234 -61929319 + L1MEc LINE L1 1724 2082 -4314 2323 88 3 0 chr11 88855184 88855481 -61928072 - AluSc SINE Alu -11 298 1 386 286 41 136 chr11 88855627 88856068 -61927485 - HAL1 LINE L1 -346 2161 1763 534 321 27 42 chr11 88856074 88856336 -61927217 + LTR67 LTR ERVL 5 262 -295 280 328 29 60 chr11 88856598 88857016 -61926537 - HAL1 LINE L1 -1360 1147 743 237 326 98 23 chr11 88857313 88857445 -61926108 - HAL1 LINE L1 -2115 392 251 3361 59 2 0 chr11 88857819 88858240 -61925313 + L1PA5 LINE L1 5621 6042 -112 345 317 67 24 chr11 88858553 88858717 -61924836 + MIR SINE MIR 88 258 -4 220 388 79 12 chr11 88859284 88859449 -61924104 + L2 LINE L2 1155 1330 -1984 246 207 0 35 chr11 88859527 88859585 -61923968 + (TATG)n Simple_repeat Simple_repeat 4 59 0 827 199 82 15 chr11 88859690 88859886 -61923667 - MER3 DNA MER1_type 0 209 1 183 229 83 0 chr11 88859910 88859958 -61923595 + L2 LINE L2 2199 2250 -1064 280 356 25 34 chr11 88860469 88860587 -61922966 + L2 LINE L2 3192 3308 -5 1742 196 5 11 chr11 88861520 88861897 -61921656 - L1MB1 LINE L1 -18 6150 5776 304 255 20 41 chr11 88861905 88862003 -61921550 + L1MC4 LINE L1 6614 6709 -1333 252 144 64 18 chr11 88862039 88862128 -61921425 - L1P5 LINE L1 -355 5796 5698 310 281 56 47 chr11 88862133 88862353 -61921200 - L1MB1 LINE L1 -735 5443 5222 432 220 101 0 chr11 88862357 88862466 -61921087 + L2 LINE L2 3193 3312 -1 1199 292 88 50 chr11 88862541 88863953 -61919600 - L1MB1 LINE L1 -1072 5074 3609 1435 203 58 54 chr11 88863986 88864422 -61919131 + MER31A LTR ERV1 3 455 -11 231 36 0 0 chr11 88864422 88864450 -61919103 + (CA)n Simple_repeat Simple_repeat 2 29 0 562 306 151 43 chr11 88864466 88865181 -61918372 - L1MB1 LINE L1 -2796 3350 2559 243 0 0 0 chr11 88865220 88865247 -61918306 + (TA)n Simple_repeat Simple_repeat 2 28 0 236 193 50 34 chr11 88865264 88865383 -61918170 + (TA)n Simple_repeat Simple_repeat 2 122 0 4700 195 46 66 chr11 88865480 88866025 -61917528 - L1MC3 LINE L1 0 7785 7231 737 122 0 0 chr11 88866025 88866148 -61917405 + L1MA4A LINE L1 6178 6300 -3 4700 195 46 66 chr11 88866148 88866763 -61916790 - L1MC3 LINE L1 -554 7231 6651 432 0 0 0 chr11 88866763 88866811 -61916742 + (TG)n Simple_repeat Simple_repeat 1 48 0 4700 195 46 66 chr11 88866811 88866937 -61916616 - L1MC3 LINE L1 -1134 6651 6524 582 60 24 0 chr11 88866969 88867052 -61916501 - L1PA8 LINE L1 -2 6170 6086 971 90 0 0 chr11 88867052 88867186 -61916367 + L1PA8 LINE L1 5955 6088 -84 1948 234 31 36 chr11 88867193 88867744 -61915809 - L1MC3 LINE L1 -1242 6543 5996 193 357 0 0 chr11 88867747 88867817 -61915736 - L2 LINE L2 -2227 1087 1018 690 297 44 39 chr11 88867825 88868185 -61915368 - L1MEd LINE L1 -5237 1317 956 273 339 144 11 chr11 88868407 88868587 -61914966 - L2 LINE L2 -936 2378 2175 305 331 55 18 chr11 88869304 88869467 -61914086 - MIR SINE MIR -76 186 18 22 35 0 0 chr11 88869706 88869735 -61913818 + AT_rich Low_complexity Low_complexity 1 29 0 365 254 0 14 chr11 88870411 88870551 -61913002 + CT-rich Low_complexity Low_complexity 1 138 0 1159 178 76 188 chr11 88870553 88871091 -61912462 - L1MC3 LINE L1 -1015 6770 6293 * 1227 184 22 4 chr11 88871085 88871313 -61912240 - L1MC3 LINE L1 -535 5798 5567 295 231 0 0 chr11 88871320 88871385 -61912168 - L1MCa LINE L1 -3457 3107 3043 * 549 223 52 40 chr11 88871378 88871546 -61912007 - L1MCa LINE L1 -5270 894 613 * 1141 202 132 7 chr11 88871545 88871690 -61911863 - L1MA10 LINE L1 -1 6333 6207 348 64 0 0 chr11 88871690 88871737 -61911816 + (TG)n Simple_repeat Simple_repeat 2 48 0 1141 202 132 7 chr11 88871737 88871863 -61911690 - L1MA10 LINE L1 -126 6208 6028 207 266 77 89 chr11 88871863 88872032 -61911521 + MIR SINE MIR 94 260 -2 32 0 0 0 chr11 88872123 88872155 -61911398 + AT_rich Low_complexity Low_complexity 1 32 0 296 319 9 35 chr11 88872286 88872402 -61911151 - MIR3 SINE MIR -22 186 74 51 58 0 0 chr11 88873217 88873303 -61910250 + AT_rich Low_complexity Low_complexity 1 86 0 429 321 135 38 chr11 88874083 88874587 -61908966 - L2 LINE L2 -453 2861 2309 26 0 0 0 chr11 88878080 88878106 -61905447 + AT_rich Low_complexity Low_complexity 1 26 0 1469 198 87 26 chr11 88878521 88878865 -61904688 + MLT1A1 LTR MaLR 1 365 0 1702 125 0 36 chr11 88878905 88879186 -61904367 + AluSc SINE Alu 1 271 -38 248 236 18 0 chr11 88879186 88879241 -61904312 + GA-rich Low_complexity Low_complexity 4 59 0 181 275 65 43 chr11 88879325 88879463 -61904090 - MIR SINE MIR -1 261 121 469 300 96 70 chr11 88879472 88880128 -61903425 + L1ME LINE L1 314 986 -5386 722 263 39 46 chr11 88880149 88880669 -61902884 + L1ME LINE L1 921 1438 -4946 240 308 68 8 chr11 88881271 88881388 -61902165 - MIR SINE MIR 0 262 139 420 271 85 64 chr11 88881590 88881778 -61901775 - MIR SINE MIR -26 236 45 228 222 0 0 chr11 88881815 88881860 -61901693 + (ATG)n Simple_repeat Simple_repeat 1 45 0 199 299 117 0 chr11 88882406 88882483 -61901070 + MIR3 SINE MIR 115 200 -8 197 119 24 0 chr11 88882757 88882799 -61900754 + (TA)n Simple_repeat Simple_repeat 1 43 0 251 320 93 0 chr11 88883455 88883552 -61900001 + MLT1J2 LTR MaLR 40 145 -305 221 234 0 0 chr11 88883659 88883706 -61899847 + CT-rich Low_complexity Low_complexity 2 48 0 1615 219 122 27 chr11 88883786 88884374 -61899179 - LTR48B LTR ERV1 0 644 1 300 303 41 41 chr11 88884643 88884788 -61898765 + L2 LINE L2 2227 2371 -943 35 24 0 0 chr11 88884798 88884840 -61898713 + AT_rich Low_complexity Low_complexity 1 42 0 1231 216 3 54 chr11 88885259 88885556 -61897997 + AluJo SINE Alu 1 282 -30 473 133 10 0 chr11 88886218 88886316 -61897237 + (TA)n Simple_repeat Simple_repeat 2 100 0 246 340 79 35 chr11 88886601 88886831 -61896722 + MIR SINE MIR 8 246 -16 194 0 39 0 chr11 88887189 88887215 -61896338 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1997 168 35 43 chr11 88887763 88888270 -61895283 + MLT2A2 LTR ERVL 1 513 -41 180 0 0 0 chr11 88888270 88888290 -61895263 + (TA)n Simple_repeat Simple_repeat 2 21 0 1997 168 35 43 chr11 88888290 88888322 -61895231 + MLT2A2 LTR ERVL 513 544 -10 1066 243 40 0 chr11 88888400 88888651 -61894902 - MLT1F1 LTR MaLR 0 567 307 683 296 79 34 chr11 88888832 88889312 -61894241 + L1MC4 LINE L1 7285 7876 -166 2569 41 0 0 chr11 88889321 88889635 -61893918 + L1PA5 LINE L1 5840 6153 -1 315 203 0 0 chr11 88889657 88889731 -61893822 + GA-rich Low_complexity Low_complexity 1 74 0 1246 215 19 4 chr11 88889844 88890109 -61893444 - L1MD3 LINE L1 -82 7913 7645 5291 165 8 8 chr11 88890342 88891529 -61892024 - L1PB3 LINE L1 0 6154 4968 200 203 16 62 chr11 88891763 88891827 -61891726 + T-rich Low_complexity Low_complexity 1 61 0 2319 161 34 52 chr11 88891925 88892423 -61891130 + LTR2B LTR ERV1 1 489 -1 2581 123 5 2 chr11 88892424 88892822 -61890731 + Harlequin LTR ERV1 1 399 -6497 * 8098 62 32 31 chr11 88892802 88893960 -61889593 + Harlequin LTR ERV1 263 1421 -5475 5641 47 9 5 chr11 88893948 88894712 -61888841 + Harlequin LTR ERV1 1808 2574 -4322 * 14549 77 12 5 chr11 88894700 88896955 -61886598 + Harlequin LTR ERV1 3340 5710 -1186 673 149 0 25 chr11 88896949 88897070 -61886483 + Harlequin LTR ERV1 6779 6896 0 * 2380 155 30 46 chr11 88897071 88897568 -61885985 + LTR2B LTR ERV1 2 490 0 28 0 0 0 chr11 88898241 88898269 -61885284 + AT_rich Low_complexity Low_complexity 1 28 0 233 310 81 46 chr11 88901261 88901632 -61881921 - L1M4 LINE L1 -3652 2494 2111 21 57 0 0 chr11 88901795 88901830 -61881723 + AT_rich Low_complexity Low_complexity 1 35 0 295 158 13 13 chr11 88902306 88902382 -61881171 + (TA)n Simple_repeat Simple_repeat 2 77 0 232 301 19 0 chr11 88902698 88902801 -61880752 - L1ME1 LINE L1 -16 6150 6046 204 97 0 0 chr11 88904532 88904563 -61878990 + (TG)n Simple_repeat Simple_repeat 2 32 0 24 0 0 0 chr11 88905544 88905568 -61877985 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 88906265 88906288 -61877265 + AT_rich Low_complexity Low_complexity 1 23 0 1693 259 112 28 chr11 88906368 88906907 -61876646 - L1ME2 LINE L1 -10 6949 6456 1234 279 83 42 chr11 88906907 88907506 -61876047 + MLT1E2 LTR MaLR 1 624 -2 1693 259 112 28 chr11 88907506 88907873 -61875680 - L1ME2 LINE L1 -503 6456 6121 1140 240 75 45 chr11 88907873 88908273 -61875280 - MER92A LTR ERV1 0 412 1 1693 259 112 28 chr11 88908273 88908489 -61875064 - L1ME2 LINE L1 -838 6121 5737 784 279 98 8 chr11 88908501 88908867 -61874686 - L1ME2 LINE L1 -1281 5660 5262 * 983 304 104 9 chr11 88908851 88909410 -61874143 - L1ME2 LINE L1 -2063 4878 4267 189 74 0 0 chr11 88909515 88909542 -61874011 + (TG)n Simple_repeat Simple_repeat 2 28 0 870 274 41 21 chr11 88909757 88910096 -61873457 - L1ME2 LINE L1 -6047 376 31 182 352 76 21 chr11 88910124 88910269 -61873284 - MIR3 SINE MIR -46 162 10 1128 294 36 39 chr11 88911487 88911953 -61871600 + L1MCb LINE L1 9 473 -5572 2602 258 56 22 chr11 88912008 88912512 -61871041 - L1M4 LINE L1 -2880 3266 2781 2567 52 0 0 chr11 88912512 88912819 -61870734 - AluY SINE Alu -4 307 1 2602 258 56 22 chr11 88912819 88913431 -61870122 - L1M4 LINE L1 -3365 2781 2112 2253 194 195 116 chr11 88913513 88913675 -61869878 + L1MC3 LINE L1 6274 6422 -1363 1871 139 0 4 chr11 88913675 88913956 -61869597 + AluSg SINE Alu 1 280 -30 2253 194 195 116 chr11 88913956 88914545 -61869008 + L1MC3 LINE L1 6422 7204 -581 306 299 0 0 chr11 88914545 88914622 -61868931 + MLT1F1 LTR MaLR 35 111 -456 2253 194 195 116 chr11 88914622 88914844 -61868709 + L1MC3 LINE L1 7204 7407 -378 1872 75 109 0 chr11 88915017 88915282 -61868271 - AluY SINE Alu -17 294 1 833 229 86 52 chr11 88915421 88915759 -61867794 + MER39 LTR ERV1 1 535 -172 761 188 40 8 chr11 88915836 88916100 -61867453 + L1MC3 LINE L1 7409 7775 -10 246 388 0 9 chr11 88916165 88916281 -61867272 + MIR SINE MIR 27 141 -67 269 326 0 31 chr11 88916783 88916881 -61866672 - MIR SINE MIR -122 140 46 306 0 0 0 chr11 88917017 88917051 -61866502 + (CA)n Simple_repeat Simple_repeat 1 34 0 513 279 97 24 chr11 88917054 88917301 -61866252 + L1MC4 LINE L1 90 354 -6069 662 287 84 2 chr11 88917432 88917735 -61865818 + L1MC4 LINE L1 4774 5097 -1844 577 287 43 9 chr11 88918015 88918245 -61865308 + L1MC4 LINE L1 6110 6347 -2256 8661 233 86 46 chr11 88918293 88919292 -61864261 - L1MC3 LINE L1 -1 8202 7245 1927 146 30 0 chr11 88919292 88919593 -61863960 + AluSx SINE Alu 1 310 -2 8661 233 86 46 chr11 88919593 88924259 -61859294 - L1MC3 LINE L1 -958 7245 2083 1406 223 41 30 chr11 88924259 88924623 -61858930 - MLT1A2 LTR MaLR -4 370 3 8661 233 86 46 chr11 88924623 88926201 -61857352 - L1MC3 LINE L1 -6120 2083 570 5988 136 100 116 chr11 88926227 88927960 -61855593 - pTR5 LTR ERV1 0 2438 734 653 237 37 32 chr11 88928034 88928344 -61855209 + LTR45B LTR ERV1 95 449 -40 228 227 0 30 chr11 88928490 88928556 -61854997 + A-rich Low_complexity Low_complexity 4 67 0 750 206 65 69 chr11 88928809 88929056 -61854497 + LTR4 LTR ERV1 351 596 0 609 249 66 113 chr11 88929068 88929355 -61854198 - L1MC3 LINE L1 -5539 506 254 4671 172 24 21 chr11 88929355 88930275 -61853278 - MER49 LTR ERV1 0 923 1 609 249 66 113 chr11 88930275 88930518 -61853035 - L1MC3 LINE L1 -5791 254 1 328 286 18 0 chr11 88930533 88930645 -61852908 + L1MC4 LINE L1 6397 6510 -2093 4163 103 79 124 chr11 88930655 88931516 -61852037 - LTR12 LTR ERV1 0 826 5 367 165 0 37 chr11 88931544 88931653 -61851900 - pTR5 LTR ERV1 -1137 1301 1197 1663 202 33 27 chr11 88931710 88932161 -61851392 - pTR5 LTR ERV1 -1243 1195 742 3162 253 110 43 chr11 88932241 88933072 -61850481 + L1MC4 LINE L1 6604 7378 -1459 3796 122 39 108 chr11 88933072 88933269 -61850284 + LTR1 LTR ERV1 1 210 -575 2113 119 4 0 chr11 88933269 88933567 -61849986 + AluSg SINE Alu 1 299 0 3796 122 39 108 chr11 88933567 88934211 -61849342 + LTR1 LTR ERV1 210 785 0 3162 253 110 43 chr11 88934211 88935428 -61848125 + L1MC4 LINE L1 7378 8835 -2 381 309 83 26 chr11 88935618 88935848 -61847705 - MIR SINE MIR -14 248 6 188 289 190 16 chr11 88936118 88936239 -61847314 + MIR SINE MIR 50 191 -71 1872 205 82 103 chr11 88936604 88937479 -61846074 - LTR28 LTR ERV1 0 1020 109 364 237 252 0 chr11 88937499 88937638 -61845915 - LTR28 LTR ERV1 -846 174 1 32774 165 23 14 chr11 88937639 88944642 -61838911 - LTR28-int LTR ERV1 -1 7090 3 666 237 26 6 chr11 88944642 88944798 -61838755 - LTR28 LTR ERV1 0 1020 862 337 162 0 29 chr11 88945000 88945068 -61838485 + LTR33 LTR ERVL 456 521 0 333 65 0 0 chr11 88945955 88946001 -61837552 - MADE1 DNA Mariner -34 46 1 239 318 0 32 chr11 88946763 88946826 -61836727 - L2 LINE L2 -9 3263 3203 1889 128 0 4 chr11 88947411 88947685 -61835868 + AluSx SINE Alu 39 311 -1 24 32 0 0 chr11 88947763 88947794 -61835759 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr11 88947877 88947903 -61835650 + AT_rich Low_complexity Low_complexity 1 26 0 285 285 68 38 chr11 88948128 88948493 -61835060 - HAL1 LINE L1 -297 2210 1835 1551 224 26 13 chr11 88948721 88949177 -61834376 - L1 LINE L1 -2396 3750 3289 528 211 8 8 chr11 88949183 88949316 -61834237 - Looper DNA T2_type -905 653 521 * 535 225 78 39 chr11 88949315 88949546 -61834007 - Looper DNA T2_type -1317 241 2 22 0 0 0 chr11 88949994 88950016 -61833537 + AT_rich Low_complexity Low_complexity 1 22 0 931 204 97 36 chr11 88950162 88950441 -61833112 + MER58B DNA MER1_type 46 341 0 276 30 0 0 chr11 88950459 88950492 -61833061 + (TG)n Simple_repeat Simple_repeat 1 33 0 261 353 114 24 chr11 88950841 88951008 -61832545 - MIR SINE MIR -27 235 54 377 282 29 41 chr11 88951403 88951573 -61831980 + L1ME3 LINE L1 5972 6139 -23 2289 107 7 3 chr11 88951901 88952211 -61831342 + AluSp SINE Alu 1 311 -2 279 340 204 0 chr11 88952493 88952684 -61830869 - L3 LINE CR1 -342 1235 1006 916 152 0 96 chr11 88952712 88952909 -61830644 + MER2 DNA MER2_type 1 178 -167 342 239 46 23 chr11 88953037 88953167 -61830386 - LTR33 LTR ERVL -6 515 383 997 205 10 5 chr11 88953193 88953393 -61830160 + Charlie1 DNA MER1_type 24 224 -2537 502 148 83 9 chr11 88953399 88953507 -61830046 + Charlie1 DNA MER1_type 2630 2745 -16 303 93 0 0 chr11 88953647 88953690 -61829863 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 372 22 0 0 chr11 88953851 88953896 -61829657 + (TG)n Simple_repeat Simple_repeat 1 45 0 348 127 0 0 chr11 88954089 88954144 -61829409 + (A)n Simple_repeat Simple_repeat 1 55 0 197 319 56 42 chr11 88954674 88954746 -61828807 - MER5A DNA MER1_type 0 189 117 339 329 85 37 chr11 88954774 88954938 -61828615 + MIR SINE MIR 20 191 -71 3707 125 25 7 chr11 88954951 88955543 -61828010 - MER4B LTR ERV1 0 610 8 298 351 66 13 chr11 88956270 88956421 -61827132 - MIR SINE MIR -50 212 54 196 381 79 0 chr11 88956466 88956592 -61826961 - L2 LINE L2 0 3272 3137 412 307 147 5 chr11 88956717 88956935 -61826618 - MIR SINE MIR -13 249 1 256 310 63 29 chr11 88956936 88957110 -61826443 - L2 LINE L2 -219 3053 2874 1481 237 10 7 chr11 88958040 88958348 -61825205 - AluJo SINE Alu -3 309 1 266 318 0 0 chr11 88959111 88959196 -61824357 + MER117 DNA MER1_type 66 150 -47 227 333 86 46 chr11 88959308 88959482 -61824071 + MIR3 SINE MIR 21 201 -7 229 400 12 0 chr11 88959998 88960078 -61823475 - L2 LINE L2 -36 3236 3156 225 354 70 32 chr11 88960082 88960240 -61823313 - MIR3 SINE MIR -31 177 14 741 244 53 12 chr11 88960259 88960505 -61823048 - L1ME2 LINE L1 -7 6157 5902 1433 242 50 39 chr11 88960552 88961082 -61822471 - L1ME2 LINE L1 -434 5730 5207 267 31 0 0 chr11 88961082 88961114 -61822439 + (CA)n Simple_repeat Simple_repeat 1 32 0 1433 242 50 39 chr11 88961114 88961319 -61822234 - L1ME2 LINE L1 -957 5207 5006 27 49 0 0 chr11 88961650 88961691 -61821862 + AT_rich Low_complexity Low_complexity 1 41 0 249 33 0 0 chr11 88961869 88961899 -61821654 + (CA)n Simple_repeat Simple_repeat 2 31 0 1834 178 39 12 chr11 88962515 88962852 -61820701 - MER7A DNA MER2_type -1 345 2 243 266 0 13 chr11 88963197 88963276 -61820277 - L1ME LINE L1 -401 5720 5643 188 287 72 81 chr11 88964032 88964241 -61819312 + MIR SINE MIR 6 212 -50 2184 117 7 0 chr11 88964245 88964536 -61819017 + AluSq SINE Alu 1 293 -20 251 300 54 39 chr11 88966238 88966368 -61817185 + L1MC4a LINE L1 6683 6814 -994 26 30 0 0 chr11 88966464 88966497 -61817056 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr11 88966856 88966878 -61816675 + AT_rich Low_complexity Low_complexity 1 22 0 3316 78 2 9 chr11 88967584 88968035 -61815518 + LTR7 LTR ERV1 1 448 -2 2998 98 2 21 chr11 88968037 88968505 -61815048 + HERVH LTR ERV1 1 459 -7254 13285 115 6 30 chr11 88968559 88970818 -61812735 + HERVH LTR ERV1 793 2995 -4718 816 160 7 0 chr11 88970797 88970947 -61812606 + HERVH LTR ERV1 3140 3290 -4423 * 3216 112 6 6 chr11 88970937 88971439 -61812114 + HERVH LTR ERV1 3492 3993 -3720 1232 94 21 0 chr11 88971441 88971632 -61811921 + HERVH LTR ERV1 4488 4682 -3031 * 5894 84 0 0 chr11 88971616 88972472 -61811081 + HERVH LTR ERV1 5769 6624 -1089 1676 67 11 37 chr11 88972473 88972741 -61810812 + HERVH LTR ERV1 7453 7713 0 3210 75 2 20 chr11 88972741 88973197 -61810356 + LTR7 LTR ERV1 1 448 -2 339 254 107 85 chr11 88973926 88974198 -61809355 + LTR50 LTR ERVL 1 278 -517 289 231 205 0 chr11 88974782 88974899 -61808654 + LTR50 LTR ERVL 655 795 0 190 341 47 12 chr11 88975823 88975908 -61807645 + MIR SINE MIR 40 127 -81 1923 188 63 5 chr11 88977329 88977712 -61805841 - MSTB LTR MaLR -5 421 17 364 294 39 49 chr11 88978454 88978658 -61804895 + L2 LINE L2 3108 3309 -4 21 36 0 0 chr11 88979989 88980017 -61803536 + AT_rich Low_complexity Low_complexity 1 28 0 29 84 0 0 chr11 88981374 88981445 -61802108 + AT_rich Low_complexity Low_complexity 1 71 0 24 0 0 0 chr11 88981619 88981643 -61801910 + AT_rich Low_complexity Low_complexity 1 24 0 1211 251 96 9 chr11 88981657 88982212 -61801341 + MER114 LTR ERV 46 648 0 1947 230 13 4 chr11 88982567 88983024 -61800529 - MER65C LTR ERV1 0 461 1 582 340 48 4 chr11 88984514 88984764 -61798789 + MIR SINE MIR 2 262 0 217 310 78 62 chr11 88984803 88984932 -61798621 + L2 LINE L2 3183 3313 0 2492 62 0 0 chr11 88985112 88985416 -61798137 - AluY SINE Alu -7 304 1 369 281 12 44 chr11 88986081 88986241 -61797312 + MER103 DNA DNA 10 164 -2 329 147 0 15 chr11 88986485 88986553 -61797000 + (TA)n Simple_repeat Simple_repeat 1 67 0 291 122 41 0 chr11 88986589 88986638 -61796915 + MLT1A1 LTR MaLR 9 59 -306 5083 176 34 6 chr11 88986641 88987554 -61795999 + Tigger1 DNA MER2_type 1 939 -1479 1051 151 92 5 chr11 88987554 88987760 -61795793 + LTR26 LTR ERV1 1 224 -379 14689 189 59 11 chr11 88987771 88988291 -61795262 + L1MA1 LINE L1 19 513 -7052 2263 136 5 44 chr11 88988291 88988681 -61794872 + THE1C LTR MaLR 1 375 0 8837 140 60 19 chr11 88988681 88990198 -61793355 + THE1C-int LTR MaLR 1 1580 0 2160 129 13 42 chr11 88990198 88990584 -61792969 + THE1C LTR MaLR 1 375 0 14689 189 59 11 chr11 88990584 88992945 -61790608 + L1MA1 LINE L1 512 3040 -4525 12716 164 25 6 chr11 88992943 88996484 -61787069 + L1MA1 LINE L1 4118 7721 0 * 1705 208 77 0 chr11 88996542 88996893 -61786660 + LTR26 LTR ERV1 226 603 0 * 8752 140 16 24 chr11 88996893 88998386 -61785167 + Tigger1 DNA MER2_type 936 2416 -2 922 232 9 19 chr11 88998386 88998583 -61784970 + MLT1A1 LTR MaLR 167 361 -4 251 281 61 0 chr11 88998777 88998859 -61784694 - L1ME LINE L1 -449 5672 5586 817 274 39 0 chr11 88999068 88999276 -61784277 - MIR SINE MIR -35 227 12 1551 151 60 39 chr11 88999301 88999633 -61783920 - MER44D DNA MER2_type 0 609 1 200 269 96 0 chr11 89000517 89000569 -61782984 + L2 LINE L2 3257 3313 0 21 0 0 0 chr11 89000734 89000755 -61782798 + AT_rich Low_complexity Low_complexity 1 21 0 213 261 50 84 chr11 89001710 89001829 -61781724 + MIR SINE MIR 102 216 -46 516 319 97 9 chr11 89002009 89002225 -61781328 - MIR SINE MIR -21 241 7 227 240 0 0 chr11 89002940 89002990 -61780563 - L2 LINE L2 -1 3312 3263 1269 251 108 26 chr11 89003945 89004447 -61779106 - L1ME3A LINE L1 -6 6164 5622 441 194 58 0 chr11 89004461 89004564 -61778989 - Tigger5 DNA MER2_type 0 2323 2215 281 211 0 18 chr11 89004639 89004696 -61778857 - Tigger5 DNA MER2_type -2267 56 1 804 266 54 14 chr11 89004698 89004995 -61778558 - L1ME3A LINE L1 -553 5609 5301 1289 262 111 60 chr11 89005000 89005568 -61777985 + MLT1E2 LTR MaLR 6 602 -24 283 296 52 26 chr11 89005589 89005859 -61777694 - L1ME3A LINE L1 -841 5305 5029 * 12027 233 34 33 chr11 89005837 89011174 -61772379 - L1PA15 LINE L1 0 6816 1443 1918 305 45 26 chr11 89011167 89011858 -61771695 - L1PA15 LINE L1 -6083 704 1 * 1475 284 77 41 chr11 89011891 89013062 -61770491 - L1ME3A LINE L1 -1122 5675 4453 2328 102 0 0 chr11 89013062 89013367 -61770186 - AluSg SINE Alu -5 305 1 1475 284 77 41 chr11 89013367 89013470 -61770083 - L1ME3A LINE L1 -2344 4453 4355 1069 256 110 22 chr11 89013522 89014057 -61769496 + L1M4 LINE L1 3876 4457 -1689 303 355 86 59 chr11 89014388 89014726 -61768827 - LTR33 LTR ERVL -174 347 1 234 356 107 60 chr11 89015673 89016092 -61767461 + L2 LINE L2 2816 3254 -18 1318 196 160 45 chr11 89016176 89016594 -61766959 + MER31B LTR ERV1 1 466 0 265 320 124 21 chr11 89016886 89017080 -61766473 - L2 LINE L2 -30 3283 3070 27 29 0 0 chr11 89017361 89017395 -61766158 + AT_rich Low_complexity Low_complexity 1 34 0 368 337 40 30 chr11 89017512 89017714 -61765839 - MIR SINE MIR -30 232 29 312 280 76 57 chr11 89017975 89018132 -61765421 - MIR SINE MIR -98 164 5 350 247 13 0 chr11 89018763 89018840 -61764713 + MIR SINE MIR 74 151 -111 2787 149 62 2 chr11 89019186 89019669 -61763884 - MER41E LTR ERV1 0 512 1 475 311 57 34 chr11 89019916 89020125 -61763428 - MIR SINE MIR -31 231 18 401 220 60 0 chr11 89020290 89020390 -61763163 - MIR SINE MIR -48 214 109 1916 148 43 26 chr11 89020408 89020759 -61762794 + MER50 LTR ERV1 1 357 -377 180 313 104 15 chr11 89022023 89022090 -61761463 - MIR SINE MIR -97 111 39 281 291 152 51 chr11 89022584 89022742 -61760811 + MIR SINE MIR 1 174 -88 289 354 57 17 chr11 89023124 89023299 -61760254 - MIR3 SINE MIR -26 182 1 305 363 73 21 chr11 89024175 89024409 -61759144 + MIR SINE MIR 15 260 -2 299 337 12 0 chr11 89024469 89024552 -61759001 - MIR SINE MIR -147 115 32 22 0 0 0 chr11 89025541 89025563 -61757990 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr11 89025857 89025887 -61757666 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr11 89025992 89026014 -61757539 + AT_rich Low_complexity Low_complexity 1 22 0 233 379 65 0 chr11 89026145 89026269 -61757284 - L2 LINE L2 0 3313 3182 436 358 82 28 chr11 89026307 89026707 -61756846 - L2 LINE L2 -481 2833 2412 180 231 0 0 chr11 89027383 89027435 -61756118 + (CA)n Simple_repeat Simple_repeat 2 53 0 1843 150 46 12 chr11 89027830 89028156 -61755397 + MER1B DNA MER1_type 1 337 0 209 87 87 29 chr11 89029377 89029446 -61754107 + (TA)n Simple_repeat Simple_repeat 1 73 0 3509 234 94 75 chr11 89029647 89031685 -61751868 + L1MC4 LINE L1 5953 8042 0 914 126 14 7 chr11 89031739 89031882 -61751671 + AluSg/x SINE Alu 159 302 -8 2129 264 65 14 chr11 89031893 89032612 -61750941 + L1ME1 LINE L1 5411 6166 0 25 95 0 0 chr11 89034321 89034395 -61749158 + AT_rich Low_complexity Low_complexity 1 74 0 205 324 113 0 chr11 89034646 89034717 -61748836 - MIR SINE MIR -92 116 38 195 309 74 25 chr11 89035148 89035229 -61748324 - MIR SINE MIR -13 249 165 279 298 77 0 chr11 89035560 89035664 -61747889 - MIR SINE MIR -86 176 65 279 0 0 0 chr11 89036269 89036300 -61747253 + (CA)n Simple_repeat Simple_repeat 1 31 0 337 328 115 28 chr11 89036307 89036576 -61746977 + L2 LINE L2 2748 3079 -193 508 223 102 30 chr11 89036716 89036882 -61746671 - MER45A DNA AcHobo 0 178 1 333 0 0 0 chr11 89039179 89039216 -61744337 + (CA)n Simple_repeat Simple_repeat 2 38 0 1910 117 17 0 chr11 89040652 89040950 -61742603 + L1MA2 LINE L1 5849 6151 -153 191 368 152 4 chr11 89041078 89041347 -61742206 + L2 LINE L2 2550 2858 -456 252 346 158 8 chr11 89041596 89041723 -61741830 + L2 LINE L2 3168 3313 0 1012 127 13 0 chr11 89042186 89042336 -61741217 - AluSq SINE Alu -28 285 134 237 309 22 22 chr11 89042348 89042484 -61741069 + L1M2 LINE L1 5619 5754 -537 21 57 0 0 chr11 89042538 89042573 -61740980 + AT_rich Low_complexity Low_complexity 1 35 0 202 314 59 29 chr11 89042707 89042809 -61740744 - MER5A DNA MER1_type -26 163 59 418 342 24 22 chr11 89043164 89043362 -61740191 + MIR SINE MIR 9 208 -54 2138 113 6 13 chr11 89043572 89043883 -61739670 + AluSq SINE Alu 1 309 -4 2274 78 0 3 chr11 89044326 89044678 -61738875 - AluY SINE Alu 0 351 1 324 377 14 33 chr11 89045002 89045217 -61738336 - L2 LINE L2 -182 3131 2921 4158 162 22 34 chr11 89045297 89046111 -61737442 + L1MC1 LINE L1 5528 6331 -2 212 343 27 0 chr11 89046167 89046240 -61737313 - MIR SINE MIR -98 110 36 308 331 76 7 chr11 89046500 89046645 -61736908 + MLT1J2 LTR MaLR 67 221 -229 2323 96 0 0 chr11 89046890 89047192 -61736361 + AluY SINE Alu 1 302 -9 1953 165 79 27 chr11 89047454 89047861 -61735692 - MSTA LTR MaLR 0 428 1 28 86 0 0 chr11 89048714 89048784 -61734769 + AT_rich Low_complexity Low_complexity 1 70 0 206 354 0 15 chr11 89049695 89049760 -61733793 + MIR3 SINE MIR 114 177 -31 286 246 57 41 chr11 89050053 89050175 -61733378 - MLT1H LTR MaLR -8 541 418 3796 193 18 42 chr11 89050450 89051309 -61732244 - L1PB4 LINE L1 -1 6155 5318 256 325 59 35 chr11 89051361 89051564 -61731989 - MLT1-int LTR MaLR -17 1354 1147 672 248 47 0 chr11 89052497 89052646 -61730907 + AluJb SINE Alu 134 289 -23 351 298 192 0 chr11 89052970 89053121 -61730432 + MER5A DNA MER1_type 9 188 -1 784 147 38 25 chr11 89053366 89053523 -61730030 + L1MB8 LINE L1 6019 6177 -1 345 100 0 0 chr11 89054103 89054153 -61729400 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 270 0 0 0 chr11 89054729 89054759 -61728794 + (TG)n Simple_repeat Simple_repeat 1 30 0 216 0 0 0 chr11 89054758 89054782 -61728771 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 23 33 0 0 chr11 89056082 89056112 -61727441 + AT_rich Low_complexity Low_complexity 1 30 0 372 256 143 0 chr11 89056424 89056557 -61726996 + LTR16A1 LTR ERVL 304 455 -2 358 375 17 0 chr11 89056562 89056738 -61726815 + HERV16 LTR ERVL 15 193 -4803 423 252 64 148 chr11 89056884 89057241 -61726312 + MLT1E-int LTR MaLR 957 1283 -88 665 296 21 56 chr11 89057311 89057794 -61725759 + MLT1E LTR MaLR 8 593 0 205 332 116 45 chr11 89057905 89058390 -61725163 + L2 LINE L2 2084 2602 -712 477 333 108 20 chr11 89059533 89059884 -61723669 - MLT1I LTR MaLR -7 402 21 336 368 43 16 chr11 89059898 89060083 -61723470 + MIR SINE MIR 11 200 -62 246 104 21 0 chr11 89060166 89060214 -61723339 + L1MA1 LINE L1 6250 6298 -4 1733 253 46 5 chr11 89061050 89061461 -61722092 - MER74C LTR ERVL -29 431 4 232 225 0 0 chr11 89061960 89062000 -61721553 + (TG)n Simple_repeat Simple_repeat 1 40 0 42618 52 2 2 chr11 89062139 89068280 -61715273 + L1PA4 LINE L1 13 6155 0 1476 218 77 24 chr11 89068781 89069157 -61714396 + MSTD LTR MaLR 1 396 0 254 260 104 0 chr11 89069257 89069334 -61714219 + MIR SINE MIR 58 142 -66 875 226 86 44 chr11 89069462 89069963 -61713590 - L1MDa LINE L1 -4121 2419 1898 948 253 70 53 chr11 89069963 89070489 -61713064 - L1MDa LINE L1 -5085 1458 924 225 0 0 0 chr11 89071128 89071153 -61712400 + (CA)n Simple_repeat Simple_repeat 2 26 0 1875 301 56 24 chr11 89071167 89072809 -61710744 - L1ME LINE L1 -3980 2100 405 198 222 25 12 chr11 89074317 89074398 -61709155 + CT-rich Low_complexity Low_complexity 6 87 0 25 0 0 0 chr11 89074515 89074540 -61709013 + AT_rich Low_complexity Low_complexity 1 25 0 360 0 0 0 chr11 89075970 89076010 -61707543 + (TG)n Simple_repeat Simple_repeat 2 41 0 208 413 16 49 chr11 89076425 89076609 -61706944 - MIR3 SINE MIR -10 198 21 516 273 117 1 chr11 89077105 89077295 -61706258 + MIR SINE MIR 4 218 -44 310 322 61 17 chr11 89078215 89078330 -61705223 + L2 LINE L2 3145 3264 -8 * 356 349 34 7 chr11 89078324 89078473 -61705080 + MIR3 SINE MIR 49 201 -7 318 302 29 65 chr11 89079301 89079440 -61704113 + L1MCb LINE L1 84 217 -5828 394 260 91 7 chr11 89079729 89079795 -61703758 + L1MCb LINE L1 570 629 -5416 1146 231 26 46 chr11 89079795 89080098 -61703455 + AluJb SINE Alu 1 297 -5 394 260 91 7 chr11 89080098 89080185 -61703368 + L1MCb LINE L1 629 736 -5309 1739 212 17 8 chr11 89080217 89080571 -61702982 - MLT1A1 LTR MaLR 0 365 9 556 265 50 12 chr11 89080571 89080859 -61702694 + L1MCb LINE L1 2494 2791 -3773 * 4586 175 50 5 chr11 89080858 89081913 -61701640 - L1PA16 LINE L1 -1 6165 5068 1165 224 4 0 chr11 89081931 89082194 -61701359 + L1PA16 LINE L1 4786 5049 -1097 215 385 28 18 chr11 89082356 89082465 -61701088 + L2 LINE L2 3148 3257 -15 272 325 26 20 chr11 89083604 89083755 -61699798 - L1M4 LINE L1 -3626 2520 2369 1107 111 0 0 chr11 89084432 89084594 -61698959 + L1PA11 LINE L1 6012 6173 -1 272 410 7 48 chr11 89084607 89084902 -61698651 - L2 LINE L2 -667 2647 2365 1023 25 0 0 chr11 89085244 89085366 -61698187 + (GA)n Simple_repeat Simple_repeat 2 123 0 21 0 0 0 chr11 89085615 89085636 -61697917 + AT_rich Low_complexity Low_complexity 1 21 0 758 236 123 86 chr11 89085695 89086419 -61697134 + L1M4 LINE L1 960 1710 -4832 1406 276 170 42 chr11 89086496 89087915 -61695638 + L1M4 LINE L1 3416 4652 -2205 2188 81 17 0 chr11 89087915 89088209 -61695344 + L1PA8 LINE L1 5858 6159 -13 1406 276 170 42 chr11 89088209 89089188 -61694365 + L1M4 LINE L1 4652 6154 -703 492 232 40 0 chr11 89089188 89089313 -61694240 - MER58C DNA MER1_type 0 215 86 257 266 31 0 chr11 89089319 89089383 -61694170 - L1ME LINE L1 -490 5676 5611 1214 273 108 36 chr11 89089500 89090138 -61693415 + L1ME1 LINE L1 5469 6152 -14 378 250 221 48 chr11 89090172 89090380 -61693173 + L1M4 LINE L1 3834 4077 -2069 343 156 31 0 chr11 89090550 89090614 -61692939 - MLT1K LTR MaLR 0 588 523 191 162 14 40 chr11 89090616 89090690 -61692863 + (TA)n Simple_repeat Simple_repeat 1 72 0 258 216 91 45 chr11 89090928 89091016 -61692537 - MIR SINE MIR -86 176 85 2019 126 14 0 chr11 89091210 89091496 -61692057 + AluSg SINE Alu 1 290 -20 2807 251 42 9 chr11 89093001 89093203 -61690350 - L1ME1 LINE L1 -51 6115 5921 2064 116 0 7 chr11 89093203 89093522 -61690031 - AluSq SINE Alu 0 317 1 2807 251 42 9 chr11 89093522 89094108 -61689445 - L1ME1 LINE L1 -245 5921 5300 659 172 15 0 chr11 89094124 89094258 -61689295 - L1MA6 LINE L1 0 6300 6165 2320 230 36 75 chr11 89094396 89095262 -61688291 - L1ME1 LINE L1 -16 6150 5319 956 262 57 20 chr11 89095292 89095815 -61687738 - L1ME1 LINE L1 -1905 4241 3682 2438 56 0 10 chr11 89096498 89096803 -61686750 - AluY SINE Alu -9 302 1 235 247 75 0 chr11 89097829 89097922 -61685631 + L1ME3A LINE L1 1175 1274 -5135 * 1058 28 0 4 chr11 89097919 89098055 -61685498 + L1P1 LINE L1 5652 5782 -373 42890 31 21 2 chr11 89098055 89104083 -61679470 + L1HS LINE L1 8 6155 0 26 0 0 0 chr11 89104083 89104109 -61679444 + AT_rich Low_complexity Low_complexity 1 26 0 189 0 0 0 chr11 89104120 89104141 -61679412 + (A)n Simple_repeat Simple_repeat 1 21 0 234 267 0 56 chr11 89104224 89104314 -61679239 + L1M1 LINE L1 2817 2901 -4664 230 255 133 58 chr11 89104469 89104845 -61678708 + L1ME3A LINE L1 2054 2457 -4130 318 260 10 10 chr11 89104909 89105005 -61678548 + L1ME3A LINE L1 5955 6050 -331 515 250 20 0 chr11 89105011 89105163 -61678390 + L1ME3A LINE L1 6094 6248 -182 3665 202 22 13 chr11 89105621 89106491 -61677062 - L1 LINE L1 -794 5352 4475 5166 221 25 5 chr11 89106518 89107802 -61675751 + L1MDb LINE L1 3399 4708 -1698 245 305 74 0 chr11 89108645 89108740 -61674813 - MIR SINE MIR -65 143 42 182 344 115 8 chr11 89108888 89109010 -61674543 + MIR3 SINE MIR 7 141 -67 377 304 114 11 chr11 89109562 89109746 -61673807 - MIR SINE MIR -40 222 20 1399 186 10 55 chr11 89109841 89110131 -61673422 + AluJo SINE Alu 15 291 -21 991 325 87 32 chr11 89110142 89110634 -61672919 - LTR33 LTR ERVL 0 521 3 198 0 0 0 chr11 89111023 89111045 -61672508 + (TTA)n Simple_repeat Simple_repeat 3 24 0 4298 73 4 9 chr11 89111045 89111608 -61671945 - L1PA7 LINE L1 -23 6131 5572 225 0 0 0 chr11 89111876 89111901 -61671652 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 7614 21 0 0 chr11 89111903 89113180 -61670373 - L1PA3 LINE L1 -5 6150 4871 10265 37 3 0 chr11 89113182 89114438 -61669115 + L1PA3 LINE L1 3630 4889 -1257 754 270 19 0 chr11 89114445 89114604 -61668949 + MER5A DNA MER1_type 27 188 -1 216 292 28 28 chr11 89114742 89114814 -61668739 - L2 LINE L2 0 3313 3242 239 164 16 33 chr11 89116047 89116108 -61667445 + T-rich Low_complexity Low_complexity 3 62 0 850 241 203 11 chr11 89116194 89116500 -61667053 - L1MD2 LINE L1 -14 6345 5967 189 197 66 118 chr11 89117672 89117748 -61665805 + MIR3 SINE MIR 132 203 -5 461 311 62 29 chr11 89118309 89118553 -61665000 + MIR SINE MIR 11 262 0 370 294 34 8 chr11 89119321 89119440 -61664113 + MIR SINE MIR 51 172 -90 257 335 48 24 chr11 89120942 89121109 -61662444 + ERVL LTR ERVL 3757 3927 -1837 235 295 21 21 chr11 89121731 89121826 -61661727 - MLT1H LTR MaLR -369 180 86 334 186 0 0 chr11 89122594 89122653 -61660900 + MSTC LTR MaLR 1 59 -369 790 202 130 0 chr11 89122663 89122871 -61660682 - Tigger7 DNA MER2_type -3 2488 2254 258 81 0 0 chr11 89122871 89122908 -61660645 + (TC)n Simple_repeat Simple_repeat 2 38 0 366 309 66 7 chr11 89123003 89123155 -61660398 + ERVL LTR ERVL 4454 4614 -1040 321 186 0 0 chr11 89123309 89123368 -61660185 - Tigger5 DNA MER2_type -10 2313 2255 7176 65 17 24 chr11 89123368 89125227 -61658326 + SVA Other Other 1 1443 0 253 355 132 18 chr11 89125294 89125514 -61658039 + ERVL LTR ERVL 4926 5170 -484 406 112 11 112 chr11 89126020 89126109 -61657444 - MADE1 DNA Mariner 0 80 1 216 0 0 0 chr11 89126600 89126624 -61656929 + (TTTTG)n Simple_repeat Simple_repeat 5 28 0 213 185 25 37 chr11 89126677 89126758 -61656795 + CT-rich Low_complexity Low_complexity 2 81 0 22 56 0 0 chr11 89127654 89127690 -61655863 + AT_rich Low_complexity Low_complexity 1 36 0 300 238 0 0 chr11 89128357 89128441 -61655112 + (TG)n Simple_repeat Simple_repeat 2 85 0 275 274 41 0 chr11 89128602 89128675 -61654878 - L2 LINE L2 -7 3306 3231 298 283 40 59 chr11 89128690 89128842 -61654711 - MIR SINE MIR -72 136 6 605 266 112 0 chr11 89128983 89129152 -61654401 - MIR SINE MIR -21 241 54 231 271 0 0 chr11 89129534 89129582 -61653971 + MLT1H LTR MaLR 431 478 -71 3226 110 12 14 chr11 89129605 89130114 -61653439 - L1PA13 LINE L1 -19 6144 5637 276 30 0 0 chr11 89130463 89130496 -61653057 + (CA)n Simple_repeat Simple_repeat 2 34 0 397 274 37 55 chr11 89131391 89131555 -61651998 - MIR SINE MIR 0 262 102 231 296 9 56 chr11 89132463 89132571 -61650982 + MIR SINE MIR 116 218 -44 294 244 67 104 chr11 89132598 89132791 -61650762 + L2 LINE L2 3123 3308 -5 243 319 60 32 chr11 89133538 89133723 -61649830 - L2 LINE L2 -221 3051 2862 316 174 83 83 chr11 89133838 89133959 -61649594 - MIR SINE MIR -123 139 19 180 412 50 27 chr11 89134623 89134885 -61648668 - L2 LINE L2 -84 3188 2921 269 203 0 0 chr11 89134947 89135011 -61648542 - MLT1H LTR MaLR 0 549 479 285 346 138 56 chr11 89135390 89135962 -61647591 - L2 LINE L2 -466 2848 2230 878 182 119 0 chr11 89135965 89136141 -61647412 + L1PB4 LINE L1 5952 6148 -8 1261 185 138 14 chr11 89136675 89136972 -61646581 - MER44D DNA MER2_type 0 609 6 217 281 61 24 chr11 89137326 89137408 -61646145 + L2 LINE L2 3229 3313 0 207 296 99 0 chr11 89138706 89138777 -61644776 + L2 LINE L2 3194 3271 -1 263 380 81 30 chr11 89138978 89139275 -61644278 - L2 LINE L2 -553 2761 2450 451 192 0 0 chr11 89139917 89139990 -61643563 - L2 LINE L2 -17 3296 3224 234 372 0 0 chr11 89140355 89140433 -61643120 - L2 LINE L2 -9 3304 3227 443 303 22 54 chr11 89141003 89141188 -61642365 - MIR SINE MIR 0 262 84 1997 95 4 0 chr11 89141594 89141868 -61641685 + L1PB4 LINE L1 5869 6143 -13 872 244 19 14 chr11 89141917 89142130 -61641423 - MIR SINE MIR -21 241 28 200 279 0 0 chr11 89142228 89142271 -61641282 - MIR SINE MIR -11 251 209 2064 137 7 0 chr11 89142379 89142679 -61640874 + AluSx SINE Alu 5 306 -6 867 144 29 0 chr11 89142694 89142868 -61640685 + GA-rich Low_complexity Low_complexity 2 180 0 318 317 145 27 chr11 89142903 89143089 -61640464 - MIR SINE MIR -32 230 23 255 284 47 88 chr11 89144222 89144370 -61639183 - MIR SINE MIR -72 190 49 1856 162 32 12 chr11 89144520 89144860 -61638693 - MER7A DNA MER2_type -1 345 1 429 328 69 28 chr11 89145428 89145922 -61637631 + L1ME4a LINE L1 5405 5918 -203 856 188 81 0 chr11 89146239 89146399 -61637154 - AluJb SINE Alu -2 310 138 466 278 135 50 chr11 89147390 89147671 -61635882 + L1MEc LINE L1 807 1111 -5285 670 234 122 9 chr11 89147671 89147885 -61635668 - MLT1C LTR MaLR -229 238 1 1683 142 64 8 chr11 89148278 89148568 -61634985 - AluSx SINE Alu 0 307 3 392 297 187 10 chr11 89148795 89149004 -61634549 + MIR SINE MIR 5 250 -12 243 289 61 61 chr11 89149482 89149679 -61633874 + MLT1L LTR MaLR 2 198 -417 610 238 33 0 chr11 89149705 89149827 -61633726 + MER45A DNA AcHobo 53 178 0 543 318 66 66 chr11 89150220 89150705 -61632848 + MLT1J LTR MaLR 27 511 0 2799 128 25 56 chr11 89150963 89151531 -61632022 + L1MA8 LINE L1 5742 6291 0 1394 211 7 14 chr11 89151533 89151812 -61631741 + AluJb SINE Alu 1 277 -35 459 0 0 0 chr11 89151821 89151872 -61631681 + (TAAAA)n Simple_repeat Simple_repeat 3 53 0 223 320 160 24 chr11 89152573 89152698 -61630855 + L2 LINE L2 3121 3262 -10 32 81 0 0 chr11 89154261 89154335 -61629218 + AT_rich Low_complexity Low_complexity 1 74 0 1911 168 18 5 chr11 89154952 89155339 -61628214 - L1MA9 LINE L1 -5 6307 5916 2076 145 14 3 chr11 89155341 89155692 -61627861 + HSMAR2 DNA Mariner 7 361 -941 525 81 0 0 chr11 89155738 89155812 -61627741 + HSMAR2 DNA Mariner 1005 1078 -224 5574 152 12 9 chr11 89155813 89156715 -61626838 + HSMAR2 DNA Mariner 360 1264 -38 1415 210 0 8 chr11 89156732 89156999 -61626554 - AluJo SINE Alu -35 277 13 261 222 14 9 chr11 89157022 89157098 -61626455 - L1MA9 LINE L1 -342 5949 5873 188 189 0 0 chr11 89157271 89157308 -61626245 - L2 LINE L2 0 3313 3277 885 289 54 43 chr11 89157371 89157720 -61625833 - LTR16A LTR ERVL -63 387 35 23 33 0 0 chr11 89157787 89157817 -61625736 + AT_rich Low_complexity Low_complexity 1 30 0 649 326 81 25 chr11 89158207 89158736 -61624817 - HERV16 LTR ERVL -3142 1854 1229 383 300 67 11 chr11 89159461 89159641 -61623912 - HERV16 LTR ERVL -4540 456 267 23 0 0 0 chr11 89160368 89160391 -61623162 + AT_rich Low_complexity Low_complexity 1 23 0 265 283 117 33 chr11 89160397 89160517 -61623036 - MIR SINE MIR -13 249 120 361 313 200 0 chr11 89160550 89160665 -61622888 + L2 LINE L2 3134 3271 -1 22 0 0 0 chr11 89160922 89160944 -61622609 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 89161572 89161593 -61621960 + AT_rich Low_complexity Low_complexity 1 21 0 2160 110 0 0 chr11 89161726 89162028 -61621525 - AluSg SINE Alu 0 302 1 290 289 70 49 chr11 89162048 89162190 -61621363 + MIR3 SINE MIR 23 167 -41 187 368 59 20 chr11 89162663 89162815 -61620738 - MER5A DNA MER1_type -28 161 4 197 346 46 54 chr11 89162933 89163063 -61620490 - L2 LINE L2 -5 3267 3139 649 260 32 25 chr11 89163328 89163639 -61619914 - L1M4 LINE L1 -3800 2582 2268 26 30 0 0 chr11 89163659 89163692 -61619861 + AT_rich Low_complexity Low_complexity 1 33 0 2859 194 42 8 chr11 89163692 89164331 -61619222 - L1MB1 LINE L1 -1 6167 5507 250 200 71 12 chr11 89164359 89164444 -61619109 - L1MC4 LINE L1 -1339 6703 6614 205 250 21 0 chr11 89164444 89164492 -61619061 + (TG)n Simple_repeat Simple_repeat 1 49 0 1546 170 34 11 chr11 89164500 89164909 -61618644 - L1MB1 LINE L1 -697 5471 5057 * 1751 262 46 40 chr11 89164907 89165555 -61617998 - L1M4c LINE L1 -3340 3617 2966 204 215 0 54 chr11 89165573 89165666 -61617887 + T-rich Low_complexity Low_complexity 6 93 0 1902 261 86 62 chr11 89165676 89166422 -61617131 - L1M4c LINE L1 -3994 2965 2235 2372 68 3 0 chr11 89166422 89166733 -61616820 - L1PA13 LINE L1 -4 6159 5848 1902 261 86 62 chr11 89166733 89167435 -61616118 - L1M4c LINE L1 -4724 2235 1551 22 70 0 0 chr11 89167440 89167483 -61616070 + AT_rich Low_complexity Low_complexity 1 43 0 2105 321 28 16 chr11 89168380 89169139 -61614414 - L1M4c LINE L1 -6073 786 19 191 337 149 36 chr11 89169165 89169776 -61613777 - L2 LINE L2 -1210 2104 1425 288 227 216 48 chr11 89170151 89170281 -61613272 - MIR SINE MIR -58 150 1 340 115 0 0 chr11 89170321 89170373 -61613180 - MADE1 DNA Mariner 0 80 29 1443 192 39 7 chr11 89170443 89170729 -61612824 - AluJb SINE Alu -17 295 1 477 277 66 97 chr11 89170730 89171019 -61612534 + MER102b DNA MER1_type 62 341 0 437 227 76 38 chr11 89171526 89171658 -61611895 + MIR3 SINE MIR 39 175 -33 481 322 62 18 chr11 89174368 89174595 -61608958 + MIR SINE MIR 5 241 -21 204 40 0 0 chr11 89175379 89175404 -61608149 + (TCC)n Simple_repeat Simple_repeat 1 25 0 366 23 0 0 chr11 89175570 89175613 -61607940 + (CA)n Simple_repeat Simple_repeat 2 44 0 708 267 44 15 chr11 89176113 89176319 -61607234 - MIR SINE MIR -28 234 23 218 352 133 8 chr11 89176470 89176598 -61606955 + L2 LINE L2 3170 3313 0 1920 201 39 45 chr11 89176663 89177171 -61606382 - MLT1D LTR MaLR 0 505 1 196 254 76 76 chr11 89177627 89177745 -61605808 - MIR SINE MIR -42 220 103 21 0 0 0 chr11 89177801 89177822 -61605731 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr11 89178031 89178066 -61605487 + AT_rich Low_complexity Low_complexity 1 35 0 1584 194 32 35 chr11 89178236 89178639 -61604914 - L1MB7 LINE L1 0 6184 5783 348 296 15 15 chr11 89178649 89178784 -61604769 + GA-rich Low_complexity Low_complexity 1 135 0 303 321 50 44 chr11 89179189 89179348 -61604205 - L3 LINE CR1 -11 1566 1407 640 289 25 15 chr11 89179354 89179440 -61604113 + MIR SINE MIR 21 105 -157 1656 174 33 90 chr11 89179440 89179864 -61603689 + MER57A LTR ERV1 3 402 -1 640 289 25 15 chr11 89179864 89179974 -61603579 + MIR SINE MIR 105 219 -43 355 235 9 64 chr11 89179979 89180114 -61603439 + MER34C LTR ERV1 10 116 -426 327 96 68 0 chr11 89180413 89180486 -61603067 - L1PA12 LINE L1 -4226 3358 3281 1235 14 0 0 chr11 89180558 89180698 -61602855 + L1PA5 LINE L1 5753 5892 -262 * 4508 241 37 73 chr11 89180695 89182996 -61600557 - L1PA12 LINE L1 -4288 3296 1 21 0 0 0 chr11 89183691 89183712 -61599841 + AT_rich Low_complexity Low_complexity 1 21 0 808 29 10 0 chr11 89183886 89183989 -61599564 + L1PA4 LINE L1 6051 6154 -1 182 305 86 29 chr11 89184024 89184129 -61599424 + MIR SINE MIR 82 192 -70 5449 135 32 17 chr11 89184457 89185665 -61597888 - L1PA13 LINE L1 0 6163 4928 202 222 0 37 chr11 89185678 89185732 -61597821 + MIR SINE MIR 81 132 -76 385 347 9 42 chr11 89186225 89186438 -61597115 + MLT1H LTR MaLR 96 301 -248 1203 235 59 3 chr11 89186442 89186783 -61596770 - L1ME LINE L1 -551 5613 5254 189 0 0 0 chr11 89186810 89186831 -61596722 + (TG)n Simple_repeat Simple_repeat 2 22 0 546 262 115 18 chr11 89186863 89187203 -61596350 - L1M4 LINE L1 -5043 1499 1127 25 0 0 0 chr11 89187600 89187625 -61595928 + AT_rich Low_complexity Low_complexity 1 25 0 375 322 28 44 chr11 89188254 89188434 -61595119 - MIR3 SINE MIR -13 195 19 23 54 0 0 chr11 89189252 89189289 -61594264 + AT_rich Low_complexity Low_complexity 1 37 0 246 180 0 66 chr11 89189291 89189352 -61594201 - MER50 LTR ERV1 -89 645 589 1776 258 101 36 chr11 89189467 89190133 -61593420 + L1M3e LINE L1 7 715 -6315 1630 180 83 9 chr11 89190141 89190685 -61592868 + L1MA9 LINE L1 4969 5538 -633 781 143 33 154 chr11 89190653 89190925 -61592628 + L1MA9 LINE L1 6044 6282 -30 * 3152 208 9 12 chr11 89190925 89191592 -61591961 + L1MB2 LINE L1 5480 6144 -27 273 109 0 0 chr11 89191597 89191643 -61591910 + (CA)n Simple_repeat Simple_repeat 1 46 0 1010 293 67 28 chr11 89191778 89192487 -61591066 + L1MC/D LINE L1 5015 5749 -747 2139 121 0 0 chr11 89194851 89195158 -61588395 + AluSx SINE Alu 1 307 -5 187 359 16 16 chr11 89195466 89195530 -61588023 + L2 LINE L2 3123 3186 -86 307 237 13 0 chr11 89195555 89195631 -61587922 + MLT1L LTR MaLR 144 220 -395 25 31 0 0 chr11 89195921 89195953 -61587600 + AT_rich Low_complexity Low_complexity 1 32 0 676 203 42 10 chr11 89196038 89196272 -61587281 - L1M LINE L1 -745 5401 5186 1879 180 45 29 chr11 89196276 89196695 -61586858 - L1MC3 LINE L1 -8 7777 7349 201 74 0 0 chr11 89196695 89196722 -61586831 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1879 180 45 29 chr11 89196722 89196746 -61586807 - L1MC3 LINE L1 -436 7349 7327 951 184 45 57 chr11 89196743 89196988 -61586565 + L1MC3 LINE L1 7084 7325 -460 * 3285 150 107 5 chr11 89197330 89197937 -61585616 - LTR51 LTR ERV1 -2 669 1 183 231 0 0 chr11 89198448 89198487 -61585066 - MIR SINE MIR -61 201 163 1505 240 72 74 chr11 89198799 89199424 -61584129 - MLT1E3 LTR MaLR 0 624 1 285 320 114 17 chr11 89199709 89199884 -61583669 - L2 LINE L2 -9 3304 3113 182 229 21 21 chr11 89199912 89199960 -61583593 - MIR3 SINE MIR -151 57 10 1260 219 51 70 chr11 89200857 89201231 -61582322 - MLT1E3 LTR MaLR 0 624 258 309 263 25 59 chr11 89201255 89201373 -61582180 - MLT1E3 LTR MaLR -516 138 25 637 229 30 103 chr11 89201377 89201639 -61581914 - L1ME LINE L1 -555 5543 5301 816 262 116 36 chr11 89201642 89202142 -61581411 - L1ME LINE L1 -968 5112 4573 317 280 23 38 chr11 89202158 89202290 -61581263 - L1ME LINE L1 -5938 132 3 206 105 26 0 chr11 89203376 89203414 -61580139 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2209 93 4 0 chr11 89203439 89203719 -61579834 - AluSp SINE Alu -30 283 3 1049 323 107 15 chr11 89203740 89204388 -61579165 + L2 LINE L2 2577 3312 -1 1408 188 31 38 chr11 89204747 89205040 -61578513 + AluJo SINE Alu 1 291 -21 24 0 0 0 chr11 89205062 89205086 -61578467 + AT_rich Low_complexity Low_complexity 1 24 0 3220 259 121 40 chr11 89205785 89208632 -61574921 - L1ME2 LINE L1 -10 6154 3052 1609 194 50 136 chr11 89208661 89209176 -61574377 + MER70A LTR ERVL 2 472 0 657 295 50 3 chr11 89209177 89209475 -61574078 - L1ME2 LINE L1 -3147 2999 2688 319 327 86 81 chr11 89209478 89209872 -61573681 + ERVL LTR ERVL 4711 5106 -658 26 0 0 0 chr11 89210869 89210895 -61572658 + AT_rich Low_complexity Low_complexity 1 26 0 357 316 57 13 chr11 89211250 89211408 -61572145 + L3 LINE CR1 1073 1237 -340 337 325 31 99 chr11 89211489 89211871 -61571682 + L2 LINE L2 2953 3308 -5 202 266 180 31 chr11 89211924 89212052 -61571501 + L3 LINE CR1 1321 1467 -110 261 0 0 0 chr11 89212074 89212103 -61571450 + (TG)n Simple_repeat Simple_repeat 2 30 0 2229 181 31 2 chr11 89212870 89213284 -61570269 + MSTB LTR MaLR 1 426 0 24 0 0 0 chr11 89213933 89213957 -61569596 + AT_rich Low_complexity Low_complexity 1 24 0 184 355 23 64 chr11 89215106 89215278 -61568275 + L2 LINE L2 2906 3070 -202 2080 114 0 4 chr11 89215901 89216208 -61567345 + AluSg SINE Alu 1 306 0 2236 93 30 0 chr11 89216650 89216950 -61566603 + AluSx SINE Alu 1 309 -3 3212 216 32 6 chr11 89217115 89217904 -61565649 - L1 LINE L1 -2199 5366 4558 3665 202 22 13 chr11 89217931 89218801 -61564752 + L1 LINE L1 4475 5352 -794 515 250 20 0 chr11 89219260 89219412 -61564141 - L1ME3A LINE L1 -182 6057 5903 233 250 10 10 chr11 89219418 89219514 -61564039 - L1ME3A LINE L1 -331 5859 5764 230 255 133 58 chr11 89219578 89219954 -61563599 - L1ME3A LINE L1 -4130 2266 1863 234 267 0 56 chr11 89220109 89220199 -61563354 - L1MEd LINE L1 -4664 2901 2817 3174 28 0 13 chr11 89220287 89220729 -61562824 - L1PA2 LINE L1 0 6155 5770 811 255 108 12 chr11 89220798 89221123 -61562430 + L1M4 LINE L1 4484 4839 -1307 408 88 0 0 chr11 89221302 89221359 -61562194 + (TA)n Simple_repeat Simple_repeat 1 57 0 42704 31 22 1 chr11 89221473 89227490 -61556063 - L1HS LINE L1 0 6155 8 1058 28 0 4 chr11 89227490 89227626 -61555927 - L1P1 LINE L1 -373 5782 5652 308 296 112 0 chr11 89227623 89227847 -61555706 - L1MEd LINE L1 -5133 2422 2185 * 2383 59 3 7 chr11 89228742 89229045 -61554508 + AluY SINE Alu 1 302 -9 976 263 57 19 chr11 89229728 89230251 -61553302 + L1ME1 LINE L1 3682 4241 -1905 2077 228 33 85 chr11 89230281 89231046 -61552507 + L1ME1 LINE L1 5319 6043 -123 855 280 74 23 chr11 89231073 89232135 -61551418 - L1M4 LINE L1 -2035 4609 3416 822 238 123 86 chr11 89232212 89232936 -61550617 - L1M4 LINE L1 -4832 1710 960 21 0 0 0 chr11 89232995 89233016 -61550537 + AT_rich Low_complexity Low_complexity 1 21 0 477 243 94 17 chr11 89234125 89234306 -61549247 + MLT1K LTR MaLR 372 566 -22 236 300 73 98 chr11 89234307 89234570 -61548983 + L2 LINE L2 737 986 -2328 6929 63 0 0 chr11 89234570 89235492 -61548061 - L1PA7 LINE L1 0 6154 5227 236 300 73 98 chr11 89235492 89235655 -61547898 + L2 LINE L2 986 1152 -2162 1809 329 73 5 chr11 89235665 89236440 -61547113 - HAL1 LINE L1 -1678 829 2 231 346 121 10 chr11 89236646 89236840 -61546713 - MIR SINE MIR -27 235 22 1111 93 0 33 chr11 89236842 89237025 -61546528 - L1PA13 LINE L1 -5 6158 5982 2272 242 36 21 chr11 89237140 89237838 -61545715 - L1MC4 LINE L1 -130 7912 7205 21 0 0 0 chr11 89237844 89237865 -61545688 + AT_rich Low_complexity Low_complexity 1 21 0 1478 241 79 52 chr11 89237918 89238614 -61544939 - L1MDb LINE L1 -4988 1421 790 5415 80 2 74 chr11 89239570 89240435 -61543118 - L1PA8 LINE L1 -5 6167 5365 197 299 142 15 chr11 89240509 89240643 -61542910 - L2 LINE L2 -559 2755 2605 1744 242 39 18 chr11 89240644 89240954 -61542599 + MLT1D LTR MaLR 2 327 -178 298 71 0 36 chr11 89240954 89241010 -61542543 + (CAAAA)n Simple_repeat Simple_repeat 3 56 0 1744 242 39 18 chr11 89241010 89241187 -61542366 + MLT1D LTR MaLR 327 499 -6 217 311 23 90 chr11 89241203 89241380 -61542173 - L2 LINE L2 -716 2598 2434 675 177 23 8 chr11 89241381 89241511 -61542042 + MLT1D-int LTR MaLR 2 133 -1238 381 305 39 26 chr11 89242149 89242303 -61541250 + MIR SINE MIR 69 224 -38 243 276 0 13 chr11 89242627 89242703 -61540850 + MIR3 SINE MIR 129 203 -5 210 217 22 0 chr11 89243268 89243314 -61540239 + MIR SINE MIR 206 252 -10 304 271 78 52 chr11 89243336 89243528 -61540025 - L1MDb LINE L1 -5576 832 636 275 356 44 7 chr11 89244181 89244316 -61539237 + L2 LINE L2 3171 3310 -3 2764 7 0 0 chr11 89245601 89245906 -61537647 - AluYa8 SINE Alu -5 305 1 2319 226 46 9 chr11 89246012 89246557 -61536996 - L1MD3 LINE L1 -7 7988 7424 277 280 84 37 chr11 89246557 89246664 -61536889 - MLT1F1 LTR MaLR -420 147 36 525 14 40 0 chr11 89246726 89246800 -61536753 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 583 167 4 3 chr11 89246800 89246918 -61536635 - L1MC3 LINE L1 -772 7013 6862 2116 109 3 10 chr11 89247229 89247542 -61536011 + AluSx SINE Alu 1 311 -1 30 27 0 0 chr11 89247930 89247967 -61535586 + AT_rich Low_complexity Low_complexity 1 37 0 325 342 92 34 chr11 89248917 89249212 -61534341 - L2 LINE L2 -1059 2255 1944 216 313 67 60 chr11 89249431 89249581 -61533972 + MIR SINE MIR 54 204 -58 262 345 50 43 chr11 89250457 89250596 -61532957 + L2 LINE L2 3127 3266 -6 181 326 0 0 chr11 89251099 89251148 -61532405 + L2 LINE L2 2925 2973 -299 302 284 101 14 chr11 89251376 89251524 -61532029 + L2 LINE L2 3149 3309 -4 1484 217 39 22 chr11 89251943 89252302 -61531251 + MLT1A1 LTR MaLR 1 365 0 219 139 0 0 chr11 89252652 89252688 -61530865 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 701 254 83 0 chr11 89253048 89253241 -61530312 - MER3 DNA MER1_type 0 209 1 295 315 19 28 chr11 89253413 89253521 -61530032 - MIR SINE MIR -111 151 45 315 238 29 19 chr11 89254881 89254986 -61528567 + L1ME LINE L1 43 148 -5922 336 340 16 11 chr11 89254987 89255178 -61528375 + L1ME LINE L1 2340 2531 -3549 623 224 81 5 chr11 89255180 89255390 -61528163 + L1ME LINE L1 2642 2867 -3213 * 931 215 69 26 chr11 89255384 89255749 -61527804 - L1 LINE L1 -3717 3848 3462 263 269 32 0 chr11 89255761 89255854 -61527699 + L1ME LINE L1 2871 2966 -3114 1199 340 5 23 chr11 89255867 89256297 -61527256 + L1M3a LINE L1 1533 1954 -5532 250 390 26 0 chr11 89256536 89256690 -61526863 + L1M3a LINE L1 2078 2235 -5251 8922 230 39 9 chr11 89256901 89258861 -61524692 + L1M3a LINE L1 2972 5041 -2524 1938 130 0 18 chr11 89258861 89259187 -61524366 + AluSx SINE Alu 4 324 0 8922 230 39 9 chr11 89259187 89259920 -61523633 + L1M3a LINE L1 5041 5751 -1814 25 0 0 0 chr11 89259921 89259946 -61523607 + AT_rich Low_complexity Low_complexity 1 25 0 1557 209 3 7 chr11 89259946 89260247 -61523306 - AluJo SINE Alu -12 300 1 225 0 0 0 chr11 89260261 89260286 -61523267 + (TTTC)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr11 89260391 89260411 -61523142 + (C)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr11 89260439 89260462 -61523091 + (A)n Simple_repeat Simple_repeat 1 23 0 198 306 104 28 chr11 89260610 89260754 -61522799 - MIR SINE MIR -50 212 58 602 335 28 9 chr11 89261011 89261229 -61522324 - MIR SINE MIR -32 230 9 731 233 142 22 chr11 89261269 89261501 -61522052 + MIR SINE MIR 3 262 0 239 359 165 0 chr11 89262644 89262856 -61520697 + MIR SINE MIR 1 247 -15 7832 30 0 0 chr11 89263375 89264319 -61519234 - L1P LINE L1 -872 5274 4331 * 36149 34 1 0 chr11 89264318 89269507 -61514046 + L1PA3 LINE L1 964 6152 -3 643 13 0 0 chr11 89269515 89269591 -61513962 - L1P LINE L1 -1812 4334 4259 7090 38 5 6 chr11 89269591 89270464 -61513089 + L1PA4 LINE L1 5282 6153 -2 270 293 12 0 chr11 89270473 89270555 -61512998 + L1MC4a LINE L1 5567 5649 -521 2334 213 4 19 chr11 89270653 89271132 -61512421 + MER70A LTR ERVL 1 472 0 380 292 79 15 chr11 89271135 89271337 -61512216 + L1MC4a LINE L1 5706 5920 -1888 36 0 0 0 chr11 89271452 89271488 -61512065 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr11 89271710 89271741 -61511812 + AT_rich Low_complexity Low_complexity 1 31 0 250 348 162 41 chr11 89271906 89272369 -61511184 + L2 LINE L2 2224 2742 -572 319 311 74 8 chr11 89272534 89272656 -61510897 + L2 LINE L2 2918 3047 -225 216 330 0 66 chr11 89272785 89272876 -61510677 + L2 LINE L2 3180 3264 -8 303 323 11 0 chr11 89272906 89272999 -61510554 - L2 LINE L2 0 3313 3220 1528 214 129 39 chr11 89273097 89273555 -61509998 - MLT1D LTR MaLR -6 499 1 3706 190 68 1 chr11 89273829 89274618 -61508935 + L1MD1 LINE L1 5401 6242 0 1666 181 36 38 chr11 89274623 89275171 -61508382 - L1M3 LINE L1 -542 6586 6033 912 193 27 5 chr11 89275172 89275359 -61508194 + L1MB1 LINE L1 5977 6167 -1 183 42 0 0 chr11 89275864 89275888 -61507665 + (CA)n Simple_repeat Simple_repeat 1 24 0 2216 35 11 18 chr11 89276178 89276480 -61507073 - AluY SINE Alu 0 300 1 331 249 90 16 chr11 89276615 89276804 -61506749 - L1M3 LINE L1 -2956 4150 3948 * 4998 178 34 14 chr11 89276800 89278725 -61504828 - L1MA7 LINE L1 -3 6288 4322 3540 113 19 6 chr11 89278720 89279261 -61504292 + L1PB2 LINE L1 5579 6126 -25 * 3582 108 20 5 chr11 89278727 89279285 -61504268 + L1PB2 LINE L1 5586 6151 0 2363 88 0 7 chr11 89329463 89329760 -61453793 - AluSc SINE Alu -14 295 1 2377 202 19 42 chr11 89329878 89330407 -61453146 - L1M3 LINE L1 -6463 567 51 333 0 0 0 chr11 89330515 89330552 -61453001 + (TAA)n Simple_repeat Simple_repeat 3 39 0 465 253 124 56 chr11 89331330 89331479 -61452074 - MER63A DNA MER1_type -1478 210 45 1634 167 18 18 chr11 89331479 89331782 -61451771 - AluJb SINE Alu 0 305 3 465 253 124 56 chr11 89331782 89331809 -61451744 - MER63A DNA MER1_type -1643 45 21 341 229 24 12 chr11 89332640 89332723 -61450830 - MLT1A2 LTR MaLR -290 84 1 294 284 101 14 chr11 89333142 89333290 -61450263 - L2 LINE L2 -4 3309 3149 262 345 50 43 chr11 89334070 89334209 -61449344 - L2 LINE L2 -6 3266 3127 214 290 43 75 chr11 89335142 89335235 -61448318 - MIR SINE MIR -119 143 54 315 342 92 34 chr11 89335454 89335749 -61447804 + L2 LINE L2 1944 2255 -1059 1252 217 43 25 chr11 89336679 89336956 -61446597 + MLT1A1 LTR MaLR 84 365 0 219 139 0 0 chr11 89337306 89337342 -61446211 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 698 254 83 0 chr11 89337702 89337895 -61445658 - MER3 DNA MER1_type 0 209 1 293 315 19 28 chr11 89338067 89338175 -61445378 - MIR SINE MIR -111 151 45 312 238 29 19 chr11 89339535 89339640 -61443913 + L1ME LINE L1 43 148 -5922 314 340 16 11 chr11 89339641 89339832 -61443721 + L1ME LINE L1 2340 2531 -3549 601 224 81 5 chr11 89339834 89340044 -61443509 + L1ME LINE L1 2642 2867 -3213 * 899 213 70 17 chr11 89340038 89340403 -61443150 - L1 LINE L1 -3717 3848 3462 251 269 32 0 chr11 89340415 89340508 -61443045 + L1ME LINE L1 2871 2966 -3114 1205 340 5 23 chr11 89340521 89340951 -61442602 + L1MA7 LINE L1 1533 1954 -5532 264 387 27 0 chr11 89341190 89341340 -61442213 + L1MA7 LINE L1 2078 2231 -5255 8767 230 39 9 chr11 89341555 89343515 -61440038 + L1MA7 LINE L1 2972 5041 -2524 1967 130 0 18 chr11 89343515 89343841 -61439712 + AluSx SINE Alu 4 324 0 8767 230 39 9 chr11 89343841 89344574 -61438979 + L1MA7 LINE L1 5041 5751 -1814 25 0 0 0 chr11 89344575 89344600 -61438953 + AT_rich Low_complexity Low_complexity 1 25 0 1561 213 3 7 chr11 89344600 89344901 -61438652 - AluJo SINE Alu -12 300 1 1223 82 0 5 chr11 89344915 89345121 -61438432 + (TTTC)n Simple_repeat Simple_repeat 1 205 0 1060 123 6 6 chr11 89345121 89345300 -61438253 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 563 90 34 0 chr11 89345321 89345410 -61438143 - L1PB2 LINE L1 0 6151 6060 2270 87 0 0 chr11 89345517 89345826 -61437727 - L1PB2 LINE L1 -257 5894 5586 4922 180 34 14 chr11 89345828 89347753 -61435800 + L1MA7 LINE L1 5741 7707 -3 306 249 90 16 chr11 89347749 89347938 -61435615 + L1 LINE L1 2988 3190 -2956 * 2266 35 11 18 chr11 89348073 89348375 -61435178 + AluY SINE Alu 1 300 0 183 42 0 0 chr11 89348665 89348689 -61434864 + (TG)n Simple_repeat Simple_repeat 1 24 0 905 193 27 5 chr11 89349194 89349381 -61434172 - L1MB1 LINE L1 -1 6167 5977 318 273 27 0 chr11 89349382 89349492 -61434061 + L1 LINE L1 5073 5185 -961 215 233 27 27 chr11 89349630 89349703 -61433850 + CT-rich Low_complexity Low_complexity 3 75 0 288 373 14 7 chr11 89349717 89349859 -61433694 + L2 LINE L2 1807 1949 -1365 189 0 0 0 chr11 89349991 89350012 -61433541 + (T)n Simple_repeat Simple_repeat 1 21 0 1925 106 51 0 chr11 89351371 89351689 -61431864 - AluSp SINE Alu 0 336 4 209 308 138 0 chr11 89352306 89352371 -61431182 - L2 LINE L2 -97 3175 3102 213 229 21 0 chr11 89352611 89352659 -61430894 + L2 LINE L2 3258 3306 -7 225 232 202 0 chr11 89353578 89353677 -61429876 - L1ME4a LINE L1 -11 6110 5992 219 69 0 0 chr11 89353987 89354016 -61429537 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 255 384 23 0 chr11 89354541 89354674 -61428879 - MIR3 SINE MIR -23 185 50 298 240 0 13 chr11 89354803 89354878 -61428675 + (CCTAT)n Simple_repeat Simple_repeat 2 75 0 373 298 118 22 chr11 89354920 89355098 -61428455 - MIR SINE MIR -4 258 64 616 300 93 10 chr11 89355185 89355475 -61428078 + L2 LINE L2 2995 3308 -5 2311 99 0 0 chr11 89355629 89355932 -61427621 + AluSg SINE Alu 1 303 -7 271 329 43 18 chr11 89357034 89357198 -61426355 + MIR SINE MIR 64 231 -31 21 0 0 0 chr11 89357305 89357326 -61426227 + AT_rich Low_complexity Low_complexity 1 21 0 375 23 0 0 chr11 89357418 89357462 -61426091 + (TTA)n Simple_repeat Simple_repeat 1 44 0 353 282 35 63 chr11 89357704 89357846 -61425707 - MIR SINE MIR -108 154 17 3977 166 47 8 chr11 89357984 89358632 -61424921 - L1MB2 LINE L1 -3 6168 5486 2155 125 0 3 chr11 89358632 89358936 -61424617 - AluSg SINE Alu -7 303 1 3977 166 47 8 chr11 89358936 89359028 -61424525 - L1MB2 LINE L1 -685 5486 5399 578 199 55 27 chr11 89359157 89359303 -61424250 - LTR43 LTR ERV1 -322 280 131 279 135 39 0 chr11 89359409 89359461 -61424092 - LTR60 LTR ERV1 -532 54 1 228 247 21 41 chr11 89359486 89359583 -61423970 + (TAG)n Simple_repeat Simple_repeat 2 96 0 181 333 119 46 chr11 89359603 89359888 -61423665 + L2 LINE L2 2552 2857 -457 2937 185 30 2 chr11 89359986 89360554 -61422999 + L1PB4 LINE L1 5571 6154 -2 352 318 92 23 chr11 89361420 89361593 -61421960 + MIR SINE MIR 28 212 -50 345 314 85 8 chr11 89361789 89361907 -61421646 - MIR SINE MIR -62 146 20 292 290 0 11 chr11 89362296 89362389 -61421164 - MER103 DNA DNA -38 128 37 21 36 0 0 chr11 89363174 89363202 -61420351 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr11 89363364 89363394 -61420159 + AT_rich Low_complexity Low_complexity 1 30 0 2362 104 0 0 chr11 89364513 89364820 -61418733 - AluSx SINE Alu -5 307 1 1606 65 0 9 chr11 89365779 89365993 -61417560 - L1PA8 LINE L1 -1 6171 5960 26 50 0 0 chr11 89366299 89366339 -61417214 + AT_rich Low_complexity Low_complexity 1 40 0 789 208 5 59 chr11 89366652 89366873 -61416680 - MER3 DNA MER1_type 0 209 1 1756 211 59 29 chr11 89368914 89369402 -61414151 - MLT1D LTR MaLR -2 503 1 388 284 127 0 chr11 89369753 89369887 -61413666 - MIR SINE MIR -63 199 49 328 191 11 64 chr11 89370094 89370188 -61413365 - MIR SINE MIR -103 159 71 207 0 0 0 chr11 89370228 89370251 -61413302 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 5082 210 72 33 chr11 89370652 89371641 -61411912 - L1MC1 LINE L1 -5 6608 5659 298 116 0 0 chr11 89371641 89371684 -61411869 - MER41B LTR ERV1 -114 521 479 5082 210 72 33 chr11 89371684 89372971 -61410582 - L1MC1 LINE L1 -954 5659 4199 1975 66 39 19 chr11 89372971 89373251 -61410302 - AluY SINE Alu 0 305 21 4023 211 89 87 chr11 89373281 89373957 -61409596 - L1MC1 LINE L1 -3401 3025 2352 2067 121 10 0 chr11 89373957 89374254 -61409299 - AluSg SINE Alu -10 300 1 4023 211 89 87 chr11 89374254 89376450 -61407103 - L1MC1 LINE L1 -4074 2352 143 2126 107 3 22 chr11 89376450 89376768 -61406785 - AluSx SINE Alu 0 312 1 4023 211 89 87 chr11 89376768 89376908 -61406645 - L1MC1 LINE L1 -6283 143 5 383 314 22 29 chr11 89377158 89377295 -61406258 + MIR SINE MIR 4 139 -123 502 274 58 14 chr11 89377336 89377544 -61406009 + L1M4 LINE L1 3715 3931 -2215 755 293 108 28 chr11 89377767 89378231 -61405322 - L3 LINE CR1 -458 1119 619 1872 164 0 23 chr11 89378480 89378785 -61404768 - AluSx SINE Alu -12 300 3 315 0 0 0 chr11 89378813 89378848 -61404705 + (CA)n Simple_repeat Simple_repeat 2 36 0 277 290 50 10 chr11 89379388 89379488 -61404065 + MIR SINE MIR 3 106 -156 2313 71 3 3 chr11 89380551 89380846 -61402707 + AluY SINE Alu 1 295 -16 23 54 0 0 chr11 89381387 89381424 -61402129 + AT_rich Low_complexity Low_complexity 1 37 0 180 339 174 9 chr11 89381840 89381949 -61401604 + L2 LINE L2 3142 3268 -4 26 64 0 0 chr11 89382041 89382088 -61401465 + AT_rich Low_complexity Low_complexity 1 47 0 762 256 39 22 chr11 89382298 89382610 -61400943 - L1MC5 LINE L1 -61 7900 7584 225 211 0 0 chr11 89382707 89382759 -61400794 + CT-rich Low_complexity Low_complexity 2 53 0 2355 171 19 52 chr11 89383187 89383279 -61400274 - L1MA6 LINE L1 0 6933 6839 1540 178 54 0 chr11 89383279 89383555 -61399998 - AluJo SINE Alu -21 291 1 2355 171 19 52 chr11 89383555 89383948 -61399605 - L1MA6 LINE L1 -94 6839 6513 2457 64 0 0 chr11 89383948 89384243 -61399310 + AluY SINE Alu 1 295 -16 2355 171 19 52 chr11 89384243 89384331 -61399222 - L1MA6 LINE L1 -420 6513 6424 448 205 7 26 chr11 89384363 89384514 -61399039 + (TA)n Simple_repeat Simple_repeat 1 148 0 239 296 23 0 chr11 89384515 89384603 -61398950 - L1MC4 LINE L1 -1339 6703 6614 233 201 27 22 chr11 89384571 89384683 -61398870 + L1MC4 LINE L1 2006 6982 -1340 * 600 267 0 0 chr11 89384706 89384886 -61398667 + (TA)n Simple_repeat Simple_repeat 1 180 0 190 239 28 0 chr11 89384927 89384998 -61398555 + (TATATG)n Simple_repeat Simple_repeat 5 77 0 2827 164 10 34 chr11 89385020 89385699 -61397854 - L1MA6 LINE L1 -514 6428 5765 1542 174 35 0 chr11 89385699 89385957 -61397596 - AluSx SINE Alu -11 301 35 2827 164 10 34 chr11 89385957 89386046 -61397507 - L1MA6 LINE L1 -1177 5765 5675 * 6096 153 38 14 chr11 89386044 89387119 -61396434 - L1M3f LINE L1 -4224 1104 4 2198 205 33 85 chr11 89387122 89387790 -61395763 - L1MA6 LINE L1 -3106 3682 3050 1402 7 0 0 chr11 89387793 89387944 -61395609 - AluYb8 SINE Alu -10 308 158 4231 250 44 44 chr11 89387944 89388445 -61395108 - L1MA6 LINE L1 -3733 3055 2555 7630 25 0 3 chr11 89388445 89389344 -61394209 + L1PA3 LINE L1 5260 6155 0 4231 250 44 44 chr11 89389344 89390952 -61392601 - L1MA6 LINE L1 -4233 2555 1279 383 310 13 32 chr11 89391184 89391342 -61392211 - L1MA6 LINE L1 -6132 657 503 418 294 50 111 chr11 89391354 89391512 -61392041 - L1MA6 LINE L1 -6365 424 258 1940 153 3 0 chr11 89391512 89391819 -61391734 - AluSq SINE Alu -5 308 1 418 294 50 111 chr11 89391819 89392082 -61391471 - L1MA6 LINE L1 -6531 258 29 628 268 76 30 chr11 89392863 89393061 -61390492 - MIR SINE MIR -40 222 16 193 327 0 0 chr11 89393590 89393642 -61389911 - L2 LINE L2 -226 3046 2995 268 371 20 15 chr11 89393844 89394041 -61389512 - L2 LINE L2 -960 2354 2157 496 330 152 10 chr11 89394189 89394492 -61389061 + L3 LINE CR1 1104 1449 -128 317 252 10 10 chr11 89395428 89395531 -61388022 - LTR41 LTR ERVL -8 765 663 248 276 86 19 chr11 89395965 89396070 -61387483 - LTR41 LTR ERVL -609 164 53 1523 206 0 26 chr11 89396193 89396499 -61387054 + AluY SINE Alu 14 311 0 520 246 60 27 chr11 89396507 89396690 -61386863 + MIR SINE MIR 72 260 -2 212 196 118 0 chr11 89396705 89396756 -61386797 + MIR SINE MIR 129 185 -77 241 196 0 0 chr11 89396927 89396969 -61386584 - L2 LINE L2 -1 3312 3271 313 299 8 63 chr11 89396969 89397096 -61386457 + MIR SINE MIR 2 121 -141 354 267 0 0 chr11 89397161 89397266 -61386287 - L1PA16 LINE L1 -1018 5128 5024 5502 119 32 3 chr11 89397277 89398277 -61385276 + L1PA16 LINE L1 5141 6165 -1 335 289 10 10 chr11 89398332 89398429 -61385124 + MIR SINE MIR 166 262 0 518 279 111 25 chr11 89398518 89398833 -61384720 - L2 LINE L2 -2270 1044 703 449 250 59 29 chr11 89398989 89399125 -61384428 + L2 LINE L2 3174 3313 0 22 0 0 0 chr11 89400634 89400656 -61382897 + AT_rich Low_complexity Low_complexity 1 22 0 250 253 10 20 chr11 89400820 89400919 -61382634 - L1M LINE L1 -756 5422 5325 491 337 88 20 chr11 89400933 89401340 -61382213 - L1M4 LINE L1 -3558 2588 2154 1769 168 6 40 chr11 89401363 89401685 -61381868 - AluSx SINE Alu -1 311 1 24 53 0 0 chr11 89401779 89401817 -61381736 + AT_rich Low_complexity Low_complexity 1 38 0 2088 120 3 26 chr11 89402058 89402366 -61381187 - AluSx SINE Alu -11 301 1 21 0 0 0 chr11 89403070 89403091 -61380462 + AT_rich Low_complexity Low_complexity 1 21 0 621 176 11 48 chr11 89403303 89403479 -61380074 + MER20 DNA MER1_type 2 218 -1 222 37 0 0 chr11 89403718 89403745 -61379808 + (CA)n Simple_repeat Simple_repeat 2 28 0 463 308 145 0 chr11 89403997 89404231 -61379322 + L2 LINE L2 3022 3289 -24 360 288 38 30 chr11 89405584 89405716 -61377837 + MIR SINE MIR 117 249 -13 270 386 45 30 chr11 89405723 89405925 -61377628 - L2 LINE L2 -1 3271 3067 514 259 71 52 chr11 89406307 89406519 -61377034 - MIR SINE MIR -33 229 14 208 235 0 0 chr11 89406833 89406884 -61376669 - L2 LINE L2 0 3313 3263 293 342 110 0 chr11 89406955 89407110 -61376443 - MIR SINE MIR 0 262 91 325 323 64 64 chr11 89407476 89407711 -61375842 - MLT1K LTR MaLR -164 424 190 180 0 0 0 chr11 89407813 89407833 -61375720 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 273 313 139 1 chr11 89408724 89408890 -61374663 + MIR3 SINE MIR 24 172 -36 2051 161 61 23 chr11 89409148 89409577 -61373976 - MER65A LTR ERV1 0 445 1 835 300 18 4 chr11 89409671 89409898 -61373655 - MIR SINE MIR -22 240 11 223 399 70 18 chr11 89410068 89410341 -61373212 + L2 LINE L2 1379 1665 -1649 1677 174 26 23 chr11 89410354 89410659 -61372894 + AluJb SINE Alu 1 306 -6 887 297 19 4 chr11 89410660 89410916 -61372637 - MIR SINE MIR 0 262 3 229 365 57 13 chr11 89411012 89411242 -61372311 + L2 LINE L2 1710 1949 -1365 198 0 0 0 chr11 89411372 89411394 -61372159 + (T)n Simple_repeat Simple_repeat 1 22 0 4045 211 9 7 chr11 89411495 89412388 -61371165 + L1PB2 LINE L1 4507 5401 -745 3512 116 7 21 chr11 89412398 89412965 -61370588 + L1PB2 LINE L1 5588 6146 -5 2171 75 7 4 chr11 89413470 89413796 -61369757 + AluY SINE Alu 1 327 0 2245 151 133 12 chr11 89413796 89414402 -61369151 + L1PA16 LINE L1 5433 6157 -9 220 372 89 24 chr11 89414658 89415239 -61368314 - L2 LINE L2 -337 2977 2359 208 318 0 57 chr11 89415444 89415532 -61368021 + L2 LINE L2 2776 2858 -456 560 126 79 24 chr11 89417145 89417272 -61366281 - L1MA4 LINE L1 -6 6294 6161 364 263 101 0 chr11 89417273 89417372 -61366181 + L2 LINE L2 3163 3271 -1 579 171 105 33 chr11 89417461 89417613 -61365940 - L1MB8 LINE L1 -12 6166 6004 449 313 41 41 chr11 89418202 89418353 -61365200 - L2 LINE L2 -1 3312 3159 378 0 0 0 chr11 89418353 89418395 -61365158 + (CA)n Simple_repeat Simple_repeat 2 43 0 449 313 41 41 chr11 89418395 89418511 -61365042 - L2 LINE L2 -153 3160 3045 1251 105 44 97 chr11 89418511 89418759 -61364794 + THE1C LTR MaLR 1 235 -140 256 345 12 0 chr11 89418819 89418903 -61364650 + MIR SINE MIR 61 145 -117 1073 168 11 0 chr11 89419062 89419241 -61364312 + MER57A LTR ERV1 69 249 -154 6270 79 19 1 chr11 89419249 89420613 -61362940 + L1PA8A LINE L1 4759 6130 -1 233 336 45 9 chr11 89420681 89420791 -61362762 + L1MD2 LINE L1 463 576 -5954 273 331 40 24 chr11 89421053 89421177 -61362376 + MIR SINE MIR 106 231 -31 355 127 0 0 chr11 89421328 89421383 -61362170 + L1MA4A LINE L1 6165 6219 -84 2128 139 0 0 chr11 89421386 89421695 -61361858 + AluSx SINE Alu 4 312 0 509 122 0 20 chr11 89421717 89421815 -61361738 + L1MA4A LINE L1 6203 6298 -5 878 302 58 32 chr11 89421941 89422608 -61360945 + L1MD2 LINE L1 2446 3139 -3401 6516 88 71 1 chr11 89422618 89424090 -61359463 - L1PA13 LINE L1 -3 6160 4640 758 160 15 24 chr11 89424090 89424284 -61359269 - MER4A LTR ERV1 -151 513 263 682 90 0 20 chr11 89424286 89424386 -61359167 - MER4A LTR ERV1 -566 98 1 733 253 30 39 chr11 89424425 89424761 -61358792 + L1MD2 LINE L1 3151 3483 -3057 727 323 28 6 chr11 89424775 89425094 -61358459 + L1ME3A LINE L1 5644 5969 -201 440 181 29 57 chr11 89425352 89425457 -61358096 + L1MA2 LINE L1 6203 6304 0 3759 245 92 38 chr11 89425470 89425649 -61357904 + L1MD2 LINE L1 3474 3642 -3111 2195 116 0 6 chr11 89425649 89425960 -61357593 + AluSc SINE Alu 1 309 0 3759 245 92 38 chr11 89425960 89428893 -61354660 + L1MD2 LINE L1 3642 6740 -13 304 246 44 92 chr11 89428897 89429039 -61354514 + L1ME3A LINE L1 3846 3974 -2172 2554 52 0 0 chr11 89429039 89429346 -61354207 + AluY SINE Alu 1 307 -4 304 246 44 92 chr11 89429346 89429431 -61354122 + L1ME3A LINE L1 3974 4062 -2084 1278 188 34 102 chr11 89429456 89429840 -61353713 + MLT1A1 LTR MaLR 1 358 -7 1675 282 92 46 chr11 89429852 89431080 -61352473 + L1ME3A LINE L1 4099 5383 -763 918 302 92 11 chr11 89431101 89431545 -61352008 + L1ME3A LINE L1 5461 5940 -230 1324 180 113 71 chr11 89431558 89431747 -61351806 - L1MD3 LINE L1 -2 7993 7813 609 123 46 23 chr11 89431747 89431877 -61351676 - L1MA7 LINE L1 0 6291 6159 1324 180 113 71 chr11 89431877 89432340 -61351213 - L1MD3 LINE L1 -182 7813 7230 1161 143 0 0 chr11 89432345 89432520 -61351033 - AluY SINE Alu -6 305 131 467 216 128 0 chr11 89432531 89432633 -61350920 - MLT1F1 LTR MaLR -452 115 1 3478 228 35 54 chr11 89432640 89433722 -61349831 - L1MD3 LINE L1 -726 7269 6208 412 313 7 27 chr11 89434329 89434479 -61349074 + MLT1J LTR MaLR 226 372 -139 348 299 120 22 chr11 89434612 89434796 -61348757 - MIR SINE MIR -60 202 1 288 397 68 0 chr11 89435668 89435814 -61347739 + L2 LINE L2 3116 3271 -1 340 359 0 17 chr11 89436255 89436372 -61347181 + MIR SINE MIR 22 136 -72 559 299 112 9 chr11 89436480 89436694 -61346859 + MIR SINE MIR 20 255 -7 467 233 68 31 chr11 89436952 89437115 -61346438 - MIR SINE MIR -26 236 68 225 0 0 0 chr11 89437156 89437181 -61346372 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 12250 182 32 25 chr11 89437312 89438533 -61345020 + L1PA15-16 LINE L1 714 1925 -4924 2534 46 0 3 chr11 89438533 89438836 -61344717 + AluY SINE Alu 1 302 -9 12250 182 32 25 chr11 89438836 89439475 -61344078 + L1PA15-16 LINE L1 1925 2558 -4291 2498 150 8 0 chr11 89439475 89439874 -61343679 - MER57A LTR ERV1 0 403 2 12250 182 32 25 chr11 89439874 89440835 -61342718 + L1PA15-16 LINE L1 2558 3357 -3492 1609 114 26 0 chr11 89440835 89441063 -61342490 - MER1B DNA MER1_type 0 339 106 1117 218 9 31 chr11 89441065 89441290 -61342263 - MER1B DNA MER1_type -77 220 1 6436 228 19 21 chr11 89441290 89443078 -61340475 + L1 LINE L1 3350 5133 -1716 4048 121 84 83 chr11 89443307 89444686 -61338867 - pTR5 LTR ERV1 0 2438 741 225 0 0 0 chr11 89445346 89445371 -61338182 + (T)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr11 89445442 89445471 -61338082 + AT_rich Low_complexity Low_complexity 1 29 0 270 176 0 0 chr11 89446201 89446252 -61337301 + CT-rich Low_complexity Low_complexity 2 52 0 2173 114 7 3 chr11 89446252 89446560 -61336993 - AluSc SINE Alu 0 309 1 892 207 11 11 chr11 89446981 89447155 -61336398 - AluJb SINE Alu -15 297 124 7201 124 9 20 chr11 89447158 89447466 -61336087 + Tigger1 DNA MER2_type 53 363 -2055 593 58 0 11 chr11 89447466 89447553 -61336000 + (TC)n Simple_repeat Simple_repeat 1 86 0 7201 124 9 20 chr11 89447553 89448364 -61335189 + Tigger1 DNA MER2_type 363 1160 -1258 3611 138 43 39 chr11 89448347 89448452 -61335101 + Tigger1 DNA MER2_type 1735 1838 -580 * 2344 105 0 0 chr11 89448452 89448747 -61334806 - AluSx SINE Alu -17 295 1 3611 138 43 39 chr11 89448747 89449310 -61334243 + Tigger1 DNA MER2_type 1838 2406 -12 2153 83 0 4 chr11 89449415 89449691 -61333862 + AluSx SINE Alu 1 275 -37 187 353 0 0 chr11 89450503 89450554 -61332999 + L2 LINE L2 3205 3255 -17 * 256 248 77 68 chr11 89450542 89450659 -61332894 + L2 LINE L2 3187 3304 -9 21 36 0 0 chr11 89450702 89450730 -61332823 + AT_rich Low_complexity Low_complexity 1 28 0 1026 47 0 0 chr11 89450777 89450906 -61332647 - L1PA5 LINE L1 0 6154 6026 23 0 0 0 chr11 89451098 89451121 -61332432 + AT_rich Low_complexity Low_complexity 1 23 0 2150 98 0 44 chr11 89451315 89451632 -61331921 + AluSc SINE Alu 1 303 -6 1734 258 42 45 chr11 89451840 89452434 -61331119 + MLT1E LTR MaLR 1 592 -1 257 203 16 156 chr11 89452901 89452943 -61330610 - MIR SINE MIR -105 157 111 1693 170 21 0 chr11 89452943 89453258 -61330295 + AluJb SINE Alu 1 321 0 257 203 16 156 chr11 89453258 89453293 -61330260 - MIR SINE MIR -151 111 100 2238 174 49 2 chr11 89453293 89453700 -61329853 - MSTB LTR MaLR 0 426 1 257 203 16 156 chr11 89453700 89453747 -61329806 - MIR SINE MIR -162 100 48 2591 236 61 22 chr11 89453939 89454698 -61328855 - L1MB8 LINE L1 -42 6136 5349 22 35 0 0 chr11 89454888 89454917 -61328636 + AT_rich Low_complexity Low_complexity 1 29 0 1225 170 167 29 chr11 89454994 89455305 -61328248 + MLT1A2 LTR MaLR 1 354 -20 1893 207 35 59 chr11 89455361 89455641 -61327912 - MLT1D LTR MaLR 0 505 241 2433 87 0 0 chr11 89455641 89455950 -61327603 - AluY SINE Alu -2 309 1 1893 207 35 59 chr11 89455950 89456177 -61327376 - MLT1D LTR MaLR -264 241 10 31 58 0 0 chr11 89456364 89456416 -61327137 + AT_rich Low_complexity Low_complexity 1 52 0 563 311 36 22 chr11 89456510 89456873 -61326680 - L1MEc LINE L1 -855 1721 1346 413 307 125 81 chr11 89457128 89457698 -61325855 - L1MEc LINE L1 -5182 1023 429 1115 258 60 40 chr11 89458179 89458679 -61324874 - L1ME2 LINE L1 -35 6129 5620 745 285 20 10 chr11 89458777 89459082 -61324471 + L1MEc LINE L1 1409 1716 -4680 3729 118 14 41 chr11 89459243 89459902 -61323651 - L1MA2 LINE L1 0 7723 7083 2175 125 84 0 chr11 89459902 89460237 -61323316 - THE1B LTR MaLR -1 363 1 2412 151 12 5 chr11 89460237 89460778 -61322775 - L1MA2 LINE L1 -636 7088 6542 * 4096 191 13 11 chr11 89460770 89461759 -61321794 - L1MA2 LINE L1 -3091 4474 3478 19178 138 80 19 chr11 89461759 89461780 -61321773 - L1MA2 LINE L1 -3965 3600 3582 2380 90 0 0 chr11 89461780 89462080 -61321473 + AluY SINE Alu 1 300 -11 19178 138 80 19 chr11 89462080 89465442 -61318111 - L1MA2 LINE L1 -3983 3582 12 380 285 154 50 chr11 89465539 89465799 -61317754 - L1MEd LINE L1 -5272 847 561 256 330 10 0 chr11 89465950 89466047 -61317506 + CT-rich Low_complexity Low_complexity 4 101 0 202 314 35 58 chr11 89466163 89466335 -61317218 + MIR SINE MIR 92 259 -3 25 31 0 0 chr11 89466831 89466863 -61316690 + AT_rich Low_complexity Low_complexity 1 32 0 185 321 28 19 chr11 89466865 89466971 -61316582 - MIR SINE MIR -36 226 120 253 261 23 15 chr11 89467694 89467824 -61315729 + (TA)n Simple_repeat Simple_repeat 1 131 0 708 248 55 95 chr11 89467836 89468235 -61315318 - L1ME2 LINE L1 -9 6155 5773 1709 140 74 47 chr11 89468321 89468686 -61314867 + THE1C LTR MaLR 1 375 0 909 115 153 0 chr11 89468750 89468933 -61314620 - L1MA2 LINE L1 -47 6257 6047 377 90 0 30 chr11 89468933 89469000 -61314553 + L1MA2 LINE L1 6240 6304 0 1584 282 171 38 chr11 89470963 89471530 -61312023 + L2 LINE L2 1846 2337 -976 1966 140 91 19 chr11 89471530 89471894 -61311659 + MLT1B LTR MaLR 1 390 0 1584 282 171 38 chr11 89471894 89472618 -61310935 + L2 LINE L2 2337 3313 0 210 289 359 6 chr11 89472988 89473147 -61310406 + L3 LINE CR1 1288 1502 -75 625 270 46 72 chr11 89473430 89473667 -61309886 + MIR SINE MIR 16 246 -16 250 316 257 12 chr11 89474199 89474370 -61309183 - MIR SINE MIR 0 262 50 438 277 62 56 chr11 89474574 89474769 -61308784 - Charlie8 DNA MER1_type -2150 267 72 274 81 0 0 chr11 89475248 89475285 -61308268 + MLT2A2 LTR ERVL 404 440 -13 368 146 71 16 chr11 89475333 89475587 -61307966 + (TA)n Simple_repeat Simple_repeat 1 268 0 2691 99 33 5 chr11 89475591 89475984 -61307569 - MLT2A1 LTR ERVL -40 404 1 362 345 82 67 chr11 89476516 89476873 -61306680 - L2 LINE L2 -5 3267 2890 982 65 0 0 chr11 89476873 89476997 -61306556 + L1PA5 LINE L1 6023 6146 -8 362 345 82 67 chr11 89476997 89477202 -61306351 - L2 LINE L2 -382 2890 2690 956 9 0 0 chr11 89477836 89477947 -61305606 - L1PA4 LINE L1 0 6155 6045 501 277 76 31 chr11 89478151 89478598 -61304955 + L1M4 LINE L1 2784 3250 -2896 429 263 141 4 chr11 89478607 89478763 -61304790 - L1ME2 LINE L1 -523 5647 5474 406 293 61 39 chr11 89478771 89478952 -61304601 + MIR SINE MIR 23 207 -55 2161 151 0 14 chr11 89478958 89479309 -61304244 - MER7A DNA MER2_type -1 345 2 215 311 66 19 chr11 89479408 89479514 -61304039 + L2 LINE L2 3203 3313 0 5109 154 19 12 chr11 89479521 89480553 -61303000 - L1PA16 LINE L1 -14 6152 5116 274 263 0 0 chr11 89480648 89480724 -61302829 - MER116 DNA Mariner -4 76 1 23 33 0 0 chr11 89480756 89480786 -61302767 + AT_rich Low_complexity Low_complexity 1 30 0 306 377 6 30 chr11 89480949 89481116 -61302437 + MIR3 SINE MIR 40 202 -6 218 328 58 58 chr11 89481233 89481422 -61302131 + MIR SINE MIR 4 192 -70 5463 178 83 72 chr11 89481547 89482114 -61301439 - L1MC3 LINE L1 -2 7783 7224 254 239 22 65 chr11 89482114 89482206 -61301347 - MLT1F1 LTR MaLR -420 147 60 5463 178 83 72 chr11 89482206 89483822 -61299731 - L1MC3 LINE L1 -561 7224 5478 4755 242 38 74 chr11 89483821 89485804 -61297749 - L1P LINE L1 -741 5413 3502 * 23 92 0 0 chr11 89485806 89485871 -61297682 + AT_rich Low_complexity Low_complexity 1 65 0 281 163 39 62 chr11 89485923 89486052 -61297501 + (TATAA)n Simple_repeat Simple_repeat 4 129 0 249 141 26 51 chr11 89486101 89486179 -61297374 + (TATAA)n Simple_repeat Simple_repeat 4 79 0 1683 251 23 0 chr11 89486180 89486622 -61296931 + L1M4 LINE L1 3401 3852 -2294 27 49 0 0 chr11 89486622 89486663 -61296890 + AT_rich Low_complexity Low_complexity 1 41 0 1459 230 34 52 chr11 89486783 89487279 -61296274 + L1M4 LINE L1 3884 4370 -1776 23 92 0 0 chr11 89488262 89488327 -61295226 + AT_rich Low_complexity Low_complexity 1 65 0 278 208 47 81 chr11 89489897 89490011 -61293542 - MIR3 SINE MIR -49 159 48 239 211 33 89 chr11 89490863 89490953 -61292600 - MIR SINE MIR -87 121 37 2044 167 74 42 chr11 89491053 89491100 -61292453 - MLT2C2 LTR ERVL -2 462 418 234 91 0 0 chr11 89491100 89491133 -61292420 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 2044 167 74 42 chr11 89491133 89491533 -61292020 - MLT2C2 LTR ERVL -46 418 1 1272 273 52 63 chr11 89491569 89492112 -61291441 + MLT1F1 LTR MaLR 5 566 -1 411 297 0 0 chr11 89493371 89493462 -61290091 - L2 LINE L2 0 3272 3182 760 304 37 0 chr11 89493710 89493924 -61289629 - MLT1-int LTR MaLR -491 880 659 1259 184 25 57 chr11 89494072 89494354 -61289199 - MLT1-int LTR MaLR -768 603 331 294 333 108 0 chr11 89494410 89494521 -61289032 - L2 LINE L2 -9 3263 3141 372 183 44 0 chr11 89494685 89494822 -61288731 + (TA)n Simple_repeat Simple_repeat 1 143 0 3054 52 0 0 chr11 89494896 89495278 -61288275 - L1PA7 LINE L1 -3 6151 5770 5262 66 0 1 chr11 89495288 89496368 -61287185 + L1PA7 LINE L1 4690 5768 -386 216 333 53 85 chr11 89496458 89496647 -61286906 - L2 LINE L2 -183 3089 2907 223 310 138 17 chr11 89497670 89497786 -61285767 + MIR3 SINE MIR 30 159 -49 394 308 34 7 chr11 89497980 89498126 -61285427 + MIR SINE MIR 102 251 -11 768 276 77 68 chr11 89499695 89500444 -61283109 + L1MC4 LINE L1 6480 7228 -733 358 276 24 18 chr11 89500627 89500797 -61282756 + L1MC5 LINE L1 7299 7469 -492 718 208 65 12 chr11 89501236 89501404 -61282149 + LTR47A LTR ERVL 276 452 0 1611 222 15 15 chr11 89501423 89501828 -61281725 - L1 LINE L1 -1560 4586 4182 2852 52 5 5 chr11 89502056 89502423 -61281130 - L1PA5 LINE L1 -6 6148 5782 21560 45 0 4 chr11 89502423 89505150 -61278403 - L1PA5 LINE L1 -1852 4294 1577 2242 202 23 86 chr11 89505153 89505850 -61277703 - L1 LINE L1 -894 5252 4600 716 161 0 23 chr11 89505862 89505992 -61277561 + L1 LINE L1 4062 4188 -1958 332 288 170 13 chr11 89506221 89506374 -61277179 - MIR SINE MIR -81 181 5 185 298 96 11 chr11 89507626 89507720 -61275833 - MIR SINE MIR -75 187 86 180 0 0 0 chr11 89507783 89507803 -61275750 + (TTA)n Simple_repeat Simple_repeat 3 22 0 24 32 0 0 chr11 89508331 89508362 -61275191 + AT_rich Low_complexity Low_complexity 1 31 0 5220 27 3 2 chr11 89509032 89509659 -61273894 + L1PA3 LINE L1 5278 5905 -250 597 249 116 6 chr11 89510460 89510641 -61272912 - MIR SINE MIR -2 260 60 864 220 33 14 chr11 89510685 89510899 -61272654 - MER20 DNA MER1_type 0 219 2 202 194 0 0 chr11 89511203 89511239 -61272314 + (ATG)n Simple_repeat Simple_repeat 3 38 0 371 252 95 83 chr11 89511239 89511452 -61272101 - MIR SINE MIR -27 235 13 184 243 9 103 chr11 89512198 89512305 -61271248 - MIR SINE MIR -66 196 100 233 114 23 23 chr11 89512450 89512494 -61271059 + L2 LINE L2 3261 3304 -9 242 326 97 34 chr11 89512546 89512578 -61270975 - MIR SINE MIR -13 249 220 2286 94 3 0 chr11 89512578 89512875 -61270678 - AluSp SINE Alu -15 298 1 242 326 97 34 chr11 89512875 89513017 -61270536 - MIR SINE MIR -42 220 64 190 277 31 0 chr11 89513424 89513489 -61270064 + L2 LINE L2 2990 3056 -216 557 130 0 78 chr11 89513611 89513726 -61269827 - L1MD1 LINE L1 0 6242 6137 4144 232 70 26 chr11 89513727 89515298 -61268255 - L1MC/D LINE L1 -743 5797 4199 361 267 20 0 chr11 89515293 89515394 -61268159 - L1 LINE L1 -1916 4230 4128 * 479 315 18 39 chr11 89515400 89515679 -61267874 - L1MC/D LINE L1 -2347 4193 3921 1795 240 37 9 chr11 89515779 89516316 -61267237 - L1MC/D LINE L1 -3061 3479 2928 37 0 0 0 chr11 89516316 89516353 -61267200 + AT_rich Low_complexity Low_complexity 1 37 0 793 221 7 0 chr11 89516368 89516517 -61267036 - AluJb SINE Alu -24 288 139 951 208 18 9 chr11 89516592 89516813 -61266740 + L1M4 LINE L1 2266 2488 -3658 892 206 36 5 chr11 89516822 89517041 -61266512 - L1MC/D LINE L1 -3890 2650 2425 1225 263 37 55 chr11 89517058 89517548 -61266005 - MLT1H LTR MaLR -49 500 20 3118 239 34 6 chr11 89517890 89518743 -61264810 - L1 LINE L1 -3075 3071 2195 589 225 164 46 chr11 89518766 89519028 -61264525 + L1MA8 LINE L1 5975 6267 -24 23 0 0 0 chr11 89519076 89519099 -61264454 + AT_rich Low_complexity Low_complexity 1 23 0 1543 161 14 126 chr11 89519403 89520097 -61263456 + MER70A LTR ERVL 1 577 -1 4408 27 0 0 chr11 89520155 89520670 -61262883 + L1PA3 LINE L1 5641 6155 0 27 49 0 0 chr11 89520869 89520910 -61262643 + AT_rich Low_complexity Low_complexity 1 41 0 182 271 21 0 chr11 89523129 89523177 -61260376 - MIR SINE MIR -139 69 21 477 243 94 17 chr11 89524275 89524456 -61259097 + MLT1K LTR MaLR 372 566 -22 6360 62 2 0 chr11 89524839 89525677 -61257876 - L1PA7 LINE L1 -90 6064 5225 239 283 132 44 chr11 89525679 89525838 -61257715 + L2 LINE L2 980 1152 -2162 1809 329 73 5 chr11 89525848 89526623 -61256930 - HAL1 LINE L1 -1678 829 2 231 346 121 10 chr11 89526829 89527023 -61256530 - MIR SINE MIR -27 235 22 1111 93 0 33 chr11 89527025 89527208 -61256345 - L1PA13 LINE L1 -5 6158 5982 2272 242 36 21 chr11 89527323 89528021 -61255532 - L1MC4 LINE L1 -130 7912 7205 21 0 0 0 chr11 89528027 89528048 -61255505 + AT_rich Low_complexity Low_complexity 1 21 0 1478 241 79 52 chr11 89528101 89528797 -61254756 - L1MDb LINE L1 -4988 1421 790 3833 198 60 74 chr11 89529753 89530611 -61252942 - L1PA8 LINE L1 -5 6167 5320 197 299 142 15 chr11 89530643 89530777 -61252776 - L2 LINE L2 -559 2755 2605 1744 242 39 18 chr11 89530778 89531088 -61252465 + MLT1D LTR MaLR 2 327 -178 298 71 0 36 chr11 89531088 89531144 -61252409 + (CAAAA)n Simple_repeat Simple_repeat 3 56 0 1744 242 39 18 chr11 89531144 89531321 -61252232 + MLT1D LTR MaLR 327 499 -6 217 311 23 90 chr11 89531337 89531514 -61252039 - L2 LINE L2 -716 2598 2434 675 177 23 8 chr11 89531515 89531645 -61251908 + MLT1D-int LTR MaLR 2 133 -1238 381 305 39 26 chr11 89532283 89532437 -61251116 + MIR SINE MIR 69 224 -38 243 276 0 13 chr11 89532761 89532837 -61250716 + MIR3 SINE MIR 129 203 -5 210 217 22 0 chr11 89533402 89533448 -61250105 + MIR SINE MIR 206 252 -10 304 271 78 52 chr11 89533470 89533662 -61249891 - L1MDb LINE L1 -5576 832 636 280 356 44 7 chr11 89534315 89534450 -61249103 + L2 LINE L2 3171 3310 -3 2799 7 0 0 chr11 89535809 89536114 -61247439 - AluYa8 SINE Alu -5 305 1 2241 225 44 9 chr11 89536220 89536790 -61246763 - L1MD3 LINE L1 -7 7988 7399 239 235 86 49 chr11 89536791 89536872 -61246681 - MLT1F1 LTR MaLR -448 119 36 525 14 40 0 chr11 89536934 89537008 -61246545 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 546 167 4 3 chr11 89537008 89537126 -61246427 - L1MC3 LINE L1 -772 7013 6862 2192 112 3 3 chr11 89537437 89537749 -61245804 + AluSx SINE Alu 1 312 0 745 52 0 0 chr11 89638010 89638107 -61145446 - L1P LINE L1 -3724 2422 2326 292 267 40 30 chr11 89638109 89638210 -61145343 + L2 LINE L2 3212 3313 0 643 249 15 68 chr11 89639558 89639763 -61143790 - MIR SINE MIR -24 238 45 421 305 128 6 chr11 89640099 89640263 -61143290 - MIR SINE MIR -13 249 66 2271 111 103 25 chr11 89641241 89641637 -61141916 - MSTA LTR MaLR 0 428 2 214 318 52 78 chr11 89641789 89641943 -61141610 + MIR SINE MIR 10 159 -103 182 350 12 25 chr11 89641893 89641973 -61141580 - MIR3 SINE MIR -43 165 87 * 1173 275 28 15 chr11 89642115 89642442 -61141111 + MER45C DNA AcHobo 1 331 -622 318 376 57 16 chr11 89642459 89642653 -61140900 + MER45C DNA AcHobo 309 510 -443 301 222 0 0 chr11 89642753 89642807 -61140746 + MER45C DNA AcHobo 900 953 0 339 25 0 0 chr11 89643698 89643738 -61139815 + (TC)n Simple_repeat Simple_repeat 1 40 0 297 0 0 0 chr11 89643737 89643770 -61139783 + (CA)n Simple_repeat Simple_repeat 1 33 0 * 358 319 28 22 chr11 89645280 89645462 -61138091 + MIR SINE MIR 13 195 -67 183 139 0 0 chr11 89647788 89647824 -61135729 + (TG)n Simple_repeat Simple_repeat 2 37 0 5392 165 23 17 chr11 89648058 89649807 -61133746 + L1PA16 LINE L1 4402 6157 -9 29 0 0 0 chr11 89649860 89649889 -61133664 + AT_rich Low_complexity Low_complexity 1 29 0 220 282 42 0 chr11 89650478 89650549 -61133004 + L2 LINE L2 3198 3271 -1 672 225 98 0 chr11 89651083 89651256 -61132297 - MIR SINE MIR -6 256 67 430 309 78 34 chr11 89651932 89652136 -61131417 - MIR SINE MIR -3 259 47 2161 125 3 0 chr11 89652136 89652441 -61131112 - AluSx SINE Alu 0 312 7 883 271 60 30 chr11 89653147 89653446 -61130107 + MLT1G1 LTR MaLR 5 312 -283 252 271 0 0 chr11 89653713 89653772 -61129781 - L2 LINE L2 -219 3053 2995 311 237 125 20 chr11 89655320 89655472 -61128081 + L1 LINE L1 3835 4002 -2144 21 0 0 0 chr11 89655488 89655509 -61128044 + AT_rich Low_complexity Low_complexity 1 21 0 1163 251 13 22 chr11 89655649 89655964 -61127589 + MER93a LTR ERV1 91 402 0 393 321 0 58 chr11 89655964 89656188 -61127365 + L1ME LINE L1 4040 4250 -1896 452 332 21 5 chr11 89656480 89656670 -61126883 + L1ME LINE L1 5078 5270 -876 289 228 25 25 chr11 89656671 89656750 -61126803 - MER116 DNA Mariner -1 79 1 348 303 50 10 chr11 89656768 89656966 -61126587 + L1ME LINE L1 5288 5493 -669 1007 182 44 0 chr11 89657249 89657430 -61126123 - MER5A DNA MER1_type 0 189 1 188 286 86 0 chr11 89657503 89657573 -61125980 - MIR SINE MIR -12 250 175 385 167 0 60 chr11 89657573 89657657 -61125896 + L1MA8 LINE L1 5715 5793 -507 370 176 8 34 chr11 89657659 89657778 -61125775 + (TA)n Simple_repeat Simple_repeat 1 116 0 2584 138 37 16 chr11 89657781 89658273 -61125280 + L1MA8 LINE L1 5785 6286 -5 512 321 19 6 chr11 89658296 89658455 -61125098 - MIR SINE MIR -82 180 20 2313 88 7 3 chr11 89658897 89659193 -61124360 + AluSx SINE Alu 1 297 -15 2593 40 0 0 chr11 89659593 89659891 -61123662 + AluY SINE Alu 1 298 -13 611 294 10 34 chr11 89660036 89660240 -61123313 + L1P3 LINE L1 669 2140 -4858 1530 206 46 3 chr11 89660243 89660612 -61122941 + L1P3 LINE L1 2278 2662 -4922 * 14707 149 40 3 chr11 89660608 89661106 -61122447 + L1M1 LINE L1 2714 3192 -2982 189 0 0 0 chr11 89661106 89661127 -61122426 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 14707 149 40 3 chr11 89661127 89663489 -61120064 + L1M1 LINE L1 3192 5685 -489 2223 101 0 7 chr11 89663489 89663787 -61119766 + AluSx SINE Alu 1 296 -16 14707 149 40 3 chr11 89663787 89663807 -61119746 + L1M1 LINE L1 5685 5703 -471 385 61 15 15 chr11 89663791 89663857 -61119696 - L1P LINE L1 -755 5391 5326 * 2461 82 3 0 chr11 89663857 89664170 -61119383 + L1PA7 LINE L1 5823 6154 0 3379 110 18 4 chr11 89664170 89664659 -61118894 + L1PA11 LINE L1 5677 6174 0 236 386 65 33 chr11 89664955 89665103 -61118450 + L2 LINE L2 3107 3260 -8 207 100 0 0 chr11 89665103 89665133 -61118420 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 306 328 194 32 chr11 89666337 89666584 -61116969 - L2 LINE L2 0 3272 2986 738 121 15 0 chr11 89666781 89666913 -61116640 - L1MA7 LINE L1 0 6291 6158 1265 154 53 0 chr11 89666915 89667241 -61116312 - L1MA8 LINE L1 -2 6289 5892 249 140 53 18 chr11 89667638 89667695 -61115858 - L1ME4a LINE L1 -3 6118 6060 425 280 53 8 chr11 89667704 89667836 -61115717 - MIR SINE MIR -1 261 124 3931 197 39 33 chr11 89667865 89668892 -61114661 + L1M1 LINE L1 2338 3370 -4195 361 313 45 9 chr11 89669059 89669171 -61114382 - L2 LINE L2 -38 3234 3119 384 286 71 19 chr11 89669270 89669536 -61114017 - L1ME4a LINE L1 -173 5948 5669 225 360 45 0 chr11 89669984 89670095 -61113458 + MIR SINE MIR 76 191 -71 711 214 15 35 chr11 89670225 89670426 -61113127 + L1MB7 LINE L1 5987 6183 -1 436 306 200 8 chr11 89670503 89670758 -61112795 - L2 LINE L2 -16 3297 2994 2304 77 3 0 chr11 89670838 89671135 -61112418 + AluY SINE Alu 1 298 -13 258 95 0 0 chr11 89671261 89671303 -61112250 + (A)n Simple_repeat Simple_repeat 1 42 0 1909 81 0 8 chr11 89671503 89671793 -61111760 - AluSc SINE Alu 0 309 47 1188 192 5 5 chr11 89672166 89672369 -61111184 + AluJo SINE Alu 84 286 -26 190 0 67 0 chr11 89672550 89672580 -61110973 + (TA)n Simple_repeat Simple_repeat 1 32 0 212 0 36 0 chr11 89672632 89672660 -61110893 + (CA)n Simple_repeat Simple_repeat 1 29 0 1139 199 26 23 chr11 89672948 89673255 -61110298 - L1MA4 LINE L1 -6 6294 5987 2787 136 20 53 chr11 89673552 89674060 -61109493 - L1PB4 LINE L1 -6 6150 5660 1921 321 76 28 chr11 89674383 89675470 -61108083 + MER89-int LTR ERV1 1907 3046 -1601 521 361 46 25 chr11 89676292 89676685 -61106868 + MER89-int LTR ERV1 6129 6529 -272 1890 140 74 3 chr11 89677262 89677598 -61105955 + MER46B DNA MER2_type 2 236 0 206 261 101 42 chr11 89677631 89677750 -61105803 - L2 LINE L2 -1720 1594 1469 236 308 83 19 chr11 89678195 89678351 -61105202 + L1 LINE L1 4865 5030 -1116 2800 3 0 0 chr11 89678353 89678653 -61104900 + AluYa5 SINE Alu 1 300 -11 621 298 82 46 chr11 89678971 89679184 -61104369 - HsTC2 DNA Tc2 -1058 840 609 2418 89 0 0 chr11 89679184 89679486 -61104067 - AluSc SINE Alu -7 302 1 621 298 82 46 chr11 89679486 89679601 -61103952 - HsTC2 DNA Tc2 -1289 609 500 25 0 0 0 chr11 89679638 89679663 -61103890 + AT_rich Low_complexity Low_complexity 1 25 0 226 260 88 77 chr11 89679835 89680016 -61103537 - HsTC2 DNA Tc2 -1713 185 3 256 284 98 0 chr11 89680065 89680167 -61103386 - MIR SINE MIR -87 175 64 303 345 55 12 chr11 89680808 89680973 -61102580 + L1M4 LINE L1 3712 3883 -2263 2173 102 6 35 chr11 89681289 89681602 -61101951 - AluSx SINE Alu -8 304 1 266 287 266 0 chr11 89682442 89682585 -61100968 + MIR SINE MIR 64 244 -18 372 293 53 7 chr11 89682707 89682857 -61100696 + MIR3 SINE MIR 45 201 -7 224 296 11 57 chr11 89683636 89683724 -61099829 - MIR SINE MIR -74 188 105 226 326 11 0 chr11 89684065 89684157 -61099396 + GA-rich Low_complexity Low_complexity 2 94 0 311 293 69 43 chr11 89684167 89684355 -61099198 + MLT1K LTR MaLR 395 587 -1 1472 74 79 0 chr11 89684436 89684652 -61098901 - L1PA8 LINE L1 -1 6171 5939 272 385 24 0 chr11 89684772 89684940 -61098613 + MIR SINE MIR 41 211 -51 2723 84 3 43 chr11 89684987 89685105 -61098448 + THE1C LTR MaLR 1 122 -253 2018 142 72 17 chr11 89685105 89685450 -61098103 - THE1B LTR MaLR 0 364 1 2723 84 3 43 chr11 89685450 89685722 -61097831 + THE1C LTR MaLR 122 375 0 382 346 19 65 chr11 89686336 89686707 -61096846 + L2 LINE L2 2698 3053 -219 821 314 12 16 chr11 89686762 89687020 -61096533 - MIR SINE MIR -4 258 2 287 260 34 82 chr11 89687574 89687720 -61095833 + L2 LINE L2 3170 3308 -5 424 384 28 5 chr11 89688441 89688652 -61094901 + MIR SINE MIR 3 218 -44 1580 83 5 0 chr11 89689976 89690181 -61093372 + AluSp SINE Alu 1 206 -107 288 102 0 68 chr11 89690181 89690240 -61093313 + AluSp SINE Alu 248 302 -1 568 219 135 34 chr11 89690300 89690478 -61093075 - MIR SINE MIR -58 204 9 316 280 75 28 chr11 89691307 89691414 -61092139 - L2 LINE L2 -8 3264 3153 518 291 50 35 chr11 89691428 89691627 -61091926 + MIR SINE MIR 20 221 -41 468 296 30 24 chr11 89691923 89692123 -61091430 - MIR SINE MIR -60 202 5 416 316 127 18 chr11 89692400 89692628 -61090925 - L3 LINE CR1 -358 1219 967 187 103 26 51 chr11 89693504 89693543 -61090010 - MIR SINE MIR -3 259 222 * 293 354 67 73 chr11 89693511 89693960 -61089593 - L2 LINE L2 -15 3257 2812 238 280 93 126 chr11 89694244 89694458 -61089095 - MIR SINE MIR -6 256 50 386 362 81 0 chr11 89694625 89694774 -61088779 + MIR3 SINE MIR 38 198 -10 339 346 86 88 chr11 89694927 89695381 -61088172 - L2 LINE L2 -8 3264 2812 21 0 0 0 chr11 89695789 89695810 -61087743 + AT_rich Low_complexity Low_complexity 1 21 0 2517 70 0 6 chr11 89696731 89697044 -61086509 + AluY SINE Alu 1 311 0 21 0 0 0 chr11 89697055 89697076 -61086477 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chr11 89697224 89697253 -61086300 + (A)n Simple_repeat Simple_repeat 1 29 0 184 330 198 19 chr11 89697262 89697368 -61086185 - MIR SINE MIR -118 144 20 187 303 184 61 chr11 89697700 89697977 -61085576 + L2 LINE L2 2573 2883 -431 286 367 77 70 chr11 89698047 89698333 -61085220 + L2 LINE L2 2981 3268 -4 1007 263 4 12 chr11 89698335 89698575 -61084978 + MER8 DNA MER2_type 1 238 -1 181 229 104 0 chr11 89699011 89699059 -61084494 + MIR3 SINE MIR 104 156 -52 187 275 211 9 chr11 89699344 89699453 -61084100 - L2 LINE L2 0 3313 3183 337 353 81 7 chr11 89699544 89699680 -61083873 - L2 LINE L2 -206 3066 2921 630 323 57 16 chr11 89700209 89700457 -61083096 - MIR SINE MIR 0 262 5 300 304 52 10 chr11 89700522 89700647 -61082906 - MIR SINE MIR -45 163 38 555 330 93 31 chr11 89700929 89701381 -61082172 + L2 LINE L2 784 1263 -2051 246 250 0 0 chr11 89701546 89701618 -61081935 + GA-rich Low_complexity Low_complexity 2 73 0 400 311 130 37 chr11 89701626 89701980 -61081573 + L2 LINE L2 1404 1790 -1524 550 336 20 16 chr11 89702106 89702356 -61081197 - MIR SINE MIR 0 262 12 204 244 0 0 chr11 89702870 89702911 -61080642 + L2 LINE L2 3211 3251 -21 390 154 154 26 chr11 89703071 89703188 -61080365 - MIR SINE MIR -65 197 66 713 200 12 0 chr11 89703360 89703525 -61080028 + GA-rich Low_complexity Low_complexity 4 170 0 1439 199 12 0 chr11 89703542 89703793 -61079760 + AluSx SINE Alu 1 254 -58 183 42 0 0 chr11 89703793 89703817 -61079736 + (GA)n Simple_repeat Simple_repeat 1 24 0 270 309 64 9 chr11 89704230 89704340 -61079213 - MIR SINE MIR -72 190 75 21 0 0 0 chr11 89704656 89704677 -61078876 + AT_rich Low_complexity Low_complexity 1 21 0 2389 100 0 0 chr11 89704733 89705042 -61078511 + AluSg1 SINE Alu 1 309 0 189 0 0 0 chr11 89705070 89705091 -61078462 + (TC)n Simple_repeat Simple_repeat 1 21 0 198 0 0 0 chr11 89705187 89705209 -61078344 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5302 162 26 35 chr11 89705209 89705303 -61078250 - L1PB3 LINE L1 -6 6148 6055 3408 78 0 16 chr11 89705303 89705754 -61077799 - MLT2A1 LTR ERVL 0 444 1 5302 162 26 35 chr11 89705754 89707696 -61075857 - L1PB3 LINE L1 -99 6055 4125 382 281 252 30 chr11 89707946 89708248 -61075305 - MLT1L LTR MaLR -43 572 204 299 341 0 0 chr11 89708256 89708341 -61075212 + L2 LINE L2 3193 3277 -36 231 240 20 0 chr11 89708410 89708460 -61075093 + MIR SINE MIR 1 51 -211 567 319 38 45 chr11 89708806 89709251 -61074302 - L1ME3 LINE L1 -215 5947 5506 324 0 0 0 chr11 89709335 89709371 -61074182 + (CA)n Simple_repeat Simple_repeat 2 37 0 509 255 99 6 chr11 89709413 89709574 -61073979 + MIR SINE MIR 87 262 0 541 277 56 56 chr11 89709597 89709810 -61073743 - MIR SINE MIR -48 214 2 322 242 99 0 chr11 89710107 89710198 -61073355 - MIR SINE MIR -81 181 82 765 249 42 70 chr11 89710607 89710965 -61072588 - L1MC4 LINE L1 -145 7897 7550 357 136 0 0 chr11 89710963 89711022 -61072531 + L1MA4A LINE L1 5922 5980 -323 * 384 319 18 9 chr11 89711076 89711189 -61072364 + L3 LINE CR1 1240 1353 -224 480 333 95 17 chr11 89711206 89711437 -61072116 - MIR SINE MIR 0 262 14 21 0 0 0 chr11 89711567 89711588 -61071965 + AT_rich Low_complexity Low_complexity 1 21 0 443 123 0 0 chr11 89712757 89712830 -61070723 + L1MA2 LINE L1 6232 6304 0 23 0 0 0 chr11 89712830 89712853 -61070700 + AT_rich Low_complexity Low_complexity 1 23 0 386 176 165 12 chr11 89713063 89713242 -61070311 - AluJb SINE Alu 0 367 176 1500 240 145 16 chr11 89713279 89713784 -61069769 + L1PA12 LINE L1 1 570 -7011 240 35 0 0 chr11 89713885 89713914 -61069639 + (A)n Simple_repeat Simple_repeat 1 29 0 270 264 180 6 chr11 89714228 89714395 -61069158 + L1ME LINE L1 5355 5550 -614 331 263 102 44 chr11 89715241 89715378 -61068175 - MIR SINE MIR -18 244 100 196 309 302 13 chr11 89715414 89715563 -61067990 - MIR SINE MIR -70 192 1 21 71 0 0 chr11 89715924 89715966 -61067587 + AT_rich Low_complexity Low_complexity 1 42 0 609 212 194 12 chr11 89716279 89716444 -61067109 + MIR SINE MIR 2 196 -66 2187 82 24 14 chr11 89716446 89716777 -61066776 - AluSp SINE Alu 0 313 3 452 292 111 27 chr11 89717034 89717266 -61066287 + MIR SINE MIR 10 256 -6 224 327 164 0 chr11 89717279 89717389 -61066164 - L2 LINE L2 -4 3309 3182 313 346 39 24 chr11 89717506 89717633 -61065920 - MIR SINE MIR -63 145 17 264 330 72 21 chr11 89717796 89717893 -61065660 + L2 LINE L2 3133 3234 -38 195 100 0 0 chr11 89718487 89718517 -61065036 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 372 22 0 0 chr11 89718731 89718776 -61064777 + (TG)n Simple_repeat Simple_repeat 2 46 0 1295 182 128 18 chr11 89718856 89719185 -61064368 - MLT1A1 LTR MaLR 0 365 1 234 217 193 0 chr11 89719341 89719424 -61064129 + L2 LINE L2 3212 3310 -3 393 350 186 19 chr11 89719570 89719936 -61063617 + L2 LINE L2 2887 3313 0 310 199 66 86 chr11 89720425 89720458 -61063095 + L1M4 LINE L1 3056 3088 -3058 1912 177 0 3 chr11 89720458 89720768 -61062785 + AluSx SINE Alu 3 311 -1 310 199 66 86 chr11 89720768 89720885 -61062668 + L1M4 LINE L1 3088 3203 -2943 282 247 0 0 chr11 89721655 89721732 -61061821 + GA-rich Low_complexity Low_complexity 3 79 0 314 223 146 39 chr11 89721793 89721896 -61061657 + L2 LINE L2 3184 3297 -16 21 0 0 0 chr11 89722450 89722471 -61061082 + AT_rich Low_complexity Low_complexity 1 21 0 439 310 137 32 chr11 89722751 89723064 -61060489 + L1ME4a LINE L1 5497 5842 -279 213 333 120 9 chr11 89724318 89724426 -61059127 + L2 LINE L2 3152 3271 -1 285 353 37 21 chr11 89724567 89724757 -61058796 - L2 LINE L2 -276 2996 2804 212 233 0 0 chr11 89725375 89725418 -61058135 + GA-rich Low_complexity Low_complexity 3 45 0 1108 237 24 75 chr11 89725662 89726155 -61057398 + Charlie4a DNA MER1_type 23 490 -18 223 323 143 0 chr11 89727037 89727170 -61056383 - MIR SINE MIR -20 242 91 275 290 31 34 chr11 89727269 89727431 -61056122 + MIR SINE MIR 55 259 -3 293 338 122 20 chr11 89727720 89727868 -61055685 + L2 LINE L2 3094 3256 -16 218 311 0 0 chr11 89728833 89728894 -61054659 + GA-rich Low_complexity Low_complexity 4 64 0 358 292 62 9 chr11 89728940 89729053 -61054500 - L2 LINE L2 -17 3255 3137 412 291 103 24 chr11 89729174 89729339 -61054214 + MIR SINE MIR 56 233 -29 264 230 40 14 chr11 89729870 89730011 -61053542 + L1MC5 LINE L1 7650 7901 -141 24 0 0 0 chr11 89730015 89730039 -61053514 + AT_rich Low_complexity Low_complexity 1 24 0 2011 102 0 0 chr11 89730262 89730567 -61052986 + AluSx SINE Alu 47 351 0 180 0 0 0 chr11 89730673 89730693 -61052860 + (C)n Simple_repeat Simple_repeat 1 20 0 534 119 0 0 chr11 89730719 89730803 -61052750 + (A)n Simple_repeat Simple_repeat 1 84 0 565 92 0 0 chr11 89730831 89730907 -61052646 + Alu SINE Alu 222 297 -12 2970 156 22 67 chr11 89731190 89731831 -61051722 + LTR9 LTR ERV1 1 612 0 1520 175 88 0 chr11 89732999 89733121 -61050432 + AluSx SINE Alu 1 111 -201 204 40 0 0 chr11 89733121 89733146 -61050407 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1520 175 88 0 chr11 89733146 89733297 -61050256 + AluSx SINE Alu 111 298 -14 262 313 8 76 chr11 89733473 89733604 -61049949 - MIR SINE MIR -109 153 32 2069 216 7 23 chr11 89733789 89734225 -61049328 - MER54A LTR ERVL -25 876 448 446 345 112 8 chr11 89734364 89734613 -61048940 + LTR33 LTR ERVL 1 275 -246 252 262 47 28 chr11 89734718 89734825 -61048728 + LTR33 LTR ERVL 412 520 -1 343 336 93 34 chr11 89735231 89735552 -61048001 + L2 LINE L2 2932 3271 -1 2111 124 140 8 chr11 89736312 89736690 -61046863 + MSTA LTR MaLR 1 428 0 793 248 129 64 chr11 89736724 89737128 -61046425 - MLT1H LTR MaLR -2 547 118 1838 154 4 4 chr11 89737435 89737715 -61045838 + AluSx SINE Alu 1 280 -32 1782 171 0 17 chr11 89737746 89738045 -61045508 + AluJb SINE Alu 1 294 -18 929 266 98 63 chr11 89738974 89739432 -61044121 + MER77 LTR ERV1 126 599 -6 223 365 0 0 chr11 89739521 89739584 -61043969 + MER91B DNA MER1_type 1 63 -127 2126 114 28 0 chr11 89740227 89740516 -61043037 - AluSq SINE Alu -16 297 1 414 348 195 16 chr11 89742042 89742120 -61041433 - L2 LINE L2 0 3313 3250 324 70 0 0 chr11 89742120 89742163 -61041390 + (CA)n Simple_repeat Simple_repeat 2 44 0 414 348 195 16 chr11 89742163 89742458 -61041095 - L2 LINE L2 -63 3250 2873 2923 56 2 29 chr11 89742470 89742863 -61040690 + MLT2A1 LTR ERVL 1 384 -60 183 80 0 0 chr11 89742863 89742888 -61040665 + (TA)n Simple_repeat Simple_repeat 1 25 0 2923 56 2 29 chr11 89742888 89742905 -61040648 + MLT2A1 LTR ERVL 384 400 -44 625 167 29 0 chr11 89742915 89743089 -61040464 + (TA)n Simple_repeat Simple_repeat 1 179 0 502 206 4 27 chr11 89743046 89743585 -61039968 + (TATATG)n Simple_repeat Simple_repeat 1 526 0 * 231 103 0 0 chr11 89743722 89743761 -61039792 + (TA)n Simple_repeat Simple_repeat 2 40 0 10191 108 0 9 chr11 89743775 89745294 -61038259 + HERV9 LTR ERV1 3899 5404 -2995 9818 108 14 10 chr11 89745294 89746820 -61036733 + HERV9 LTR ERV1 6868 8399 0 993 163 89 83 chr11 89746820 89747281 -61036272 + LTR12 LTR ERV1 1 277 -437 268 263 12 0 chr11 89747281 89747361 -61036192 + LTR30 LTR ERV1 544 624 -98 562 158 0 47 chr11 89747361 89747486 -61036067 + LTR12 LTR ERV1 49 714 0 262 250 39 122 chr11 89747511 89747667 -61035886 + L2 LINE L2 3171 3313 0 273 303 42 15 chr11 89747856 89748022 -61035531 - MIR SINE MIR -52 210 1 264 238 0 83 chr11 89748238 89748322 -61035231 + AluJ/FLAM SINE Alu 1 77 -225 2534 60 0 3 chr11 89748460 89748761 -61034792 + AluY SINE Alu 1 300 -11 1681 116 25 85 chr11 89748761 89749115 -61034438 - THE1C LTR MaLR -42 333 1 2276 157 22 18 chr11 89749115 89749566 -61033987 + L1MA9 LINE L1 5333 5785 -527 1944 104 0 57 chr11 89749566 89749863 -61033690 + AluSx SINE Alu 1 280 -32 366 61 0 0 chr11 89749863 89749912 -61033641 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 51 70 0 0 chr11 89749935 89750035 -61033518 + AT_rich Low_complexity Low_complexity 1 100 0 1381 171 29 53 chr11 89750045 89750420 -61033133 + L1MA9 LINE L1 5767 6132 -180 394 35 0 35 chr11 89750420 89750477 -61033076 - MLT2A2 LTR ERVL 0 453 399 278 51 0 0 chr11 89750510 89750549 -61033004 - MLT2A2 LTR ERVL -413 40 2 711 172 51 0 chr11 89750550 89750707 -61032846 + L1MA9 LINE L1 6128 6292 -20 2984 70 5 0 chr11 89750764 89751161 -61032392 - MLT2A1 LTR ERVL -45 399 1 867 156 40 0 chr11 89751166 89751339 -61032214 + L1MA9 LINE L1 6133 6312 0 1930 138 46 3 chr11 89751410 89751735 -61031818 + MER2 DNA MER2_type 7 345 0 193 235 0 78 chr11 89751876 89751927 -61031626 + L2 LINE L2 3133 3179 -93 530 272 28 11 chr11 89752107 89752287 -61031266 + MER117 DNA MER1_type 15 197 0 312 27 0 0 chr11 89752340 89752377 -61031176 + (GA)n Simple_repeat Simple_repeat 1 37 0 343 270 26 26 chr11 89752438 89752553 -61031000 + L2 LINE L2 3199 3313 0 301 290 86 0 chr11 89752648 89752741 -61030812 - L1MC4 LINE L1 -1327 6715 6615 324 0 0 0 chr11 89752741 89752777 -61030776 + (CA)n Simple_repeat Simple_repeat 1 36 0 389 21 0 0 chr11 89752780 89752827 -61030726 - L1P LINE L1 -743 5411 5365 10188 106 0 9 chr11 89752970 89754483 -61029070 + HERV9 LTR ERV1 3905 5404 -2995 9840 109 13 10 chr11 89754483 89756010 -61027543 + HERV9 LTR ERV1 6868 8399 0 985 152 16 148 chr11 89756010 89756471 -61027082 + LTR12 LTR ERV1 1 277 -437 268 263 12 0 chr11 89756471 89756551 -61027002 + LTR30 LTR ERV1 544 624 -98 562 158 0 47 chr11 89756551 89756676 -61026877 + LTR12 LTR ERV1 49 714 0 262 250 39 122 chr11 89756701 89756857 -61026696 + L2 LINE L2 3171 3313 0 273 303 42 15 chr11 89757046 89757212 -61026341 - MIR SINE MIR -52 210 1 264 238 0 83 chr11 89757428 89757512 -61026041 + AluJ/FLAM SINE Alu 1 77 -225 2611 58 0 3 chr11 89757650 89757960 -61025593 + AluY SINE Alu 1 309 -2 444 307 15 44 chr11 89758060 89758265 -61025288 + MIR SINE MIR 18 216 -46 964 275 97 65 chr11 89758572 89758632 -61024921 + MLT1H LTR MaLR 73 130 -419 2271 122 0 0 chr11 89758632 89758943 -61024610 + AluSq SINE Alu 1 311 -2 964 275 97 65 chr11 89758943 89759344 -61024209 + MLT1H LTR MaLR 130 549 0 513 294 60 22 chr11 89760624 89760808 -61022745 - MIR SINE MIR -52 210 20 200 345 35 23 chr11 89760970 89761057 -61022496 + MIR SINE MIR 23 110 -152 605 232 40 28 chr11 89761105 89761282 -61022271 - L2 LINE L2 0 3313 3135 254 374 42 53 chr11 89761657 89761847 -61021706 - MIR SINE MIR -72 190 3 3440 70 23 0 chr11 89762135 89762578 -61020975 + MLT2A2 LTR ERVL 1 453 0 2298 113 3 0 chr11 89762948 89763257 -61020296 - AluSp SINE Alu -3 310 1 494 262 26 58 chr11 89763257 89763448 -61020105 + MIR SINE MIR 66 250 -12 591 289 184 39 chr11 89763632 89764171 -61019382 + L2 LINE L2 2343 2959 -355 353 324 64 6 chr11 89765066 89765239 -61018314 + MIR SINE MIR 73 255 -7 537 265 12 42 chr11 89765369 89765535 -61018018 + MER58A DNA MER1_type 1 161 0 1489 222 33 70 chr11 89765536 89766054 -61017499 - MLT1D LTR MaLR -1 504 6 851 254 97 4 chr11 89766345 89766573 -61016980 + MIR SINE MIR 10 258 -4 255 229 0 0 chr11 89766970 89767018 -61016535 + Zaphod DNA AcHobo 5 52 -3979 420 153 94 0 chr11 89767668 89767753 -61015800 + MER115 DNA AcHobo 601 693 0 190 410 87 26 chr11 89768740 89768935 -61014618 - L2 LINE L2 -8 3264 3058 2097 132 138 8 chr11 89769488 89769866 -61013687 + MSTA LTR MaLR 1 427 -1 392 396 7 0 chr11 89771170 89771324 -61012229 - L2 LINE L2 -582 2732 2578 520 273 105 38 chr11 89772141 89772350 -61011203 - MIR SINE MIR -20 242 20 185 62 0 31 chr11 89772738 89772770 -61010783 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1377 169 20 20 chr11 89772780 89773076 -61010477 - L1MA9 LINE L1 -10 6302 6007 21 36 0 0 chr11 89773083 89773111 -61010442 + AT_rich Low_complexity Low_complexity 1 28 0 872 178 0 0 chr11 89773114 89773271 -61010282 - L1PA16 LINE L1 -392 5774 5618 * 1582 167 57 30 chr11 89773270 89773636 -61009917 + L1PA16 LINE L1 5791 6166 0 1623 226 37 113 chr11 89774063 89774737 -61008816 + MLT1E2 LTR MaLR 2 626 0 24 0 0 0 chr11 89774768 89774792 -61008761 + AT_rich Low_complexity Low_complexity 1 24 0 645 168 67 11 chr11 89774917 89775096 -61008457 + Zaphod DNA AcHobo 602 790 -3241 * 1526 294 27 4 chr11 89775090 89775577 -61007976 - Zaphod DNA AcHobo -3445 586 89 278 130 0 19 chr11 89776333 89776387 -61007166 + (TCC)n Simple_repeat Simple_repeat 2 54 0 422 341 34 10 chr11 89776616 89776821 -61006732 + MIR SINE MIR 22 231 -31 2681 174 32 20 chr11 89776821 89777328 -61006225 + MLT2B2 LTR ERVL 1 513 -2 378 109 0 0 chr11 89777290 89777345 -61006208 - MLT2A2 LTR ERVL 0 453 399 * 189 147 0 0 chr11 89777347 89777381 -61006172 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 766 69 0 0 chr11 89777382 89777483 -61006070 - MLT2A2 LTR ERVL -40 413 313 314 320 21 0 chr11 89777483 89777580 -61005973 + L1MC4 LINE L1 6605 6703 -1339 * 346 290 43 0 chr11 89777526 89777619 -61005934 - L1MC4 LINE L1 -1339 6703 6607 22 35 0 0 chr11 89777656 89777685 -61005868 + AT_rich Low_complexity Low_complexity 1 29 0 1199 271 89 17 chr11 89777908 89778314 -61005239 + LTR16A LTR ERVL 16 450 0 2728 276 68 57 chr11 89778319 89779245 -61004308 + HAL1 LINE L1 637 1551 -956 2219 139 3 0 chr11 89779245 89779555 -61003998 - AluSx SINE Alu 0 312 2 2728 276 68 57 chr11 89779555 89780158 -61003395 + HAL1 LINE L1 1551 2146 -361 2310 118 20 3 chr11 89780158 89780506 -61003047 + THE1A LTR MaLR 2 355 0 11554 93 12 3 chr11 89780506 89782071 -61001482 + THE1A-int LTR MaLR 1 1580 0 2131 129 31 17 chr11 89782071 89782421 -61001132 + THE1A LTR MaLR 1 355 0 2728 276 68 57 chr11 89782421 89782585 -61000968 + HAL1 LINE L1 2145 2352 -155 226 397 22 15 chr11 89783075 89783211 -61000342 + MIR3 SINE MIR 7 143 -65 648 363 78 11 chr11 89783261 89783619 -60999934 + L2 LINE L2 2403 2784 -530 7489 173 26 24 chr11 89783638 89785361 -60998192 + L1MA9 LINE L1 3594 5336 -976 1885 127 28 79 chr11 89785361 89785402 -60998151 - THE1C LTR MaLR -2 373 331 2498 63 0 3 chr11 89785402 89785703 -60997850 + AluY SINE Alu 1 300 -11 1885 127 28 79 chr11 89785703 89786054 -60997499 - THE1C LTR MaLR -44 331 1 7489 173 26 24 chr11 89786054 89786505 -60997048 + L1MA9 LINE L1 5336 5785 -527 1944 104 0 57 chr11 89786505 89786802 -60996751 + AluSx SINE Alu 1 280 -32 366 61 0 0 chr11 89786802 89786851 -60996702 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 51 70 0 0 chr11 89786874 89786974 -60996579 + AT_rich Low_complexity Low_complexity 1 100 0 1381 171 29 53 chr11 89786984 89787359 -60996194 + L1MA9 LINE L1 5767 6132 -180 394 35 0 35 chr11 89787359 89787416 -60996137 - MLT2A2 LTR ERVL 0 453 399 278 51 0 0 chr11 89787449 89787488 -60996065 - MLT2A2 LTR ERVL -413 40 2 711 172 51 0 chr11 89787489 89787646 -60995907 + L1MA9 LINE L1 6128 6292 -20 2984 70 5 0 chr11 89787703 89788100 -60995453 - MLT2A1 LTR ERVL -45 399 1 958 156 40 0 chr11 89788105 89788278 -60995275 + L1MA9 LINE L1 6133 6312 0 2089 138 46 3 chr11 89788349 89788674 -60994879 + MER2 DNA MER2_type 7 345 0 193 235 0 78 chr11 89788815 89788866 -60994687 + L2 LINE L2 3133 3179 -93 616 260 28 17 chr11 89789046 89789227 -60994326 + MER117 DNA MER1_type 15 197 0 312 27 0 0 chr11 89789280 89789317 -60994236 + (GA)n Simple_repeat Simple_repeat 1 37 0 337 261 26 26 chr11 89789378 89789493 -60994060 + L2 LINE L2 3199 3313 0 519 123 0 0 chr11 89789602 89789683 -60993870 + (TA)n Simple_repeat Simple_repeat 1 81 0 328 26 0 0 chr11 89789683 89789721 -60993832 + (CA)n Simple_repeat Simple_repeat 1 38 0 544 16 0 0 chr11 89789722 89789784 -60993769 - L1P LINE L1 -743 5411 5350 6329 43 1 4 chr11 89789785 89790521 -60993032 + L1PA5 LINE L1 5420 6153 -1 31 0 0 0 chr11 89790521 89790552 -60993001 + AT_rich Low_complexity Low_complexity 1 31 0 390 311 41 0 chr11 89790586 89790708 -60992845 + L2 LINE L2 2932 3058 -214 284 358 139 0 chr11 89792393 89792530 -60991023 - L2 LINE L2 -1 3271 3116 381 256 83 8 chr11 89792827 89792960 -60990593 + MIR SINE MIR 64 206 -56 450 351 23 17 chr11 89794308 89794482 -60989071 - L2 LINE L2 -576 2738 2564 474 210 110 59 chr11 89795012 89795231 -60988322 - L1MEd LINE L1 -4862 1257 1028 5268 157 24 30 chr11 89795248 89796806 -60986747 - L1PB4 LINE L1 -1 6155 4614 3594 196 36 9 chr11 89796801 89797573 -60985980 + L1PB4 LINE L1 3832 4624 -1522 * 512 348 73 62 chr11 89797601 89798540 -60985013 - L1MEd LINE L1 -5151 968 19 24 0 0 0 chr11 89798657 89798681 -60984872 + AT_rich Low_complexity Low_complexity 1 24 0 820 293 27 8 chr11 89798681 89798940 -60984613 + L3 LINE CR1 1063 1326 -251 388 338 15 22 chr11 89798975 89799111 -60984442 + MIR3 SINE MIR 66 200 -8 1726 172 0 20 chr11 89799313 89799615 -60983938 + AluJo SINE Alu 1 296 -16 371 290 118 50 chr11 89799627 89799848 -60983705 + MIR SINE MIR 20 255 -7 292 314 51 17 chr11 89800605 89800723 -60982830 + MIR SINE MIR 22 143 -119 2714 122 3 5 chr11 89800955 89801331 -60982222 - THE1C LTR MaLR 0 375 1 190 158 18 88 chr11 89801543 89801600 -60981953 - MIR SINE MIR -80 182 130 272 285 126 13 chr11 89801601 89801752 -60981801 - LTR16C LTR ERVL 0 491 324 200 269 237 0 chr11 89802310 89802403 -60981150 - MIR SINE MIR -147 115 1 401 282 65 35 chr11 89802511 89802681 -60980872 + MIR3 SINE MIR 8 182 -26 3264 179 63 7 chr11 89802990 89803594 -60979959 - LTR9B LTR ERV1 0 644 7 1322 204 8 16 chr11 89803594 89803887 -60979666 - HUERS-P3 LTR ERV1 0 8918 7168 15620 121 31 29 chr11 89804361 89807483 -60976070 - HUERS-P3 LTR ERV1 -670 6748 868 2335 174 70 2 chr11 89807483 89807896 -60975657 + LTR8 LTR ERV1 1 441 -250 8061 193 64 73 chr11 89807896 89810150 -60973403 - HUERS-P3b LTR ERV1 -4776 2642 409 645 109 0 50 chr11 89810153 89810254 -60973299 - HUERS-P3b LTR ERV1 -7322 96 1 3209 172 53 10 chr11 89810254 89810860 -60972693 - LTR9B LTR ERV1 0 644 13 231 286 221 0 chr11 89810894 89811048 -60972505 - MIR3 SINE MIR -4 204 17 237 264 165 25 chr11 89811836 89811957 -60971596 - MIR SINE MIR -3 259 122 1810 147 61 61 chr11 89812212 89812587 -60970966 + THE1C LTR MaLR 1 375 0 236 296 19 0 chr11 89812625 89812679 -60970874 - MIR SINE MIR -133 75 21 2150 139 0 0 chr11 89812748 89813049 -60970504 - AluSx SINE Alu -11 301 1 1852 179 34 11 chr11 89813065 89813417 -60970136 - MLT1A1 LTR MaLR -5 360 1 362 320 40 6 chr11 89813734 89813909 -60969644 + L1ME4a LINE L1 5688 5868 -253 281 319 101 42 chr11 89814415 89814534 -60969019 + MIR3 SINE MIR 9 134 -74 258 219 12 61 chr11 89814677 89814759 -60968794 - MIR SINE MIR 0 262 185 * 2007 286 67 46 chr11 89814750 89815128 -60968425 - L2 LINE L2 0 3313 2945 1747 58 0 0 chr11 89815128 89815334 -60968219 + L1PA5 LINE L1 5946 6151 -3 2007 286 67 46 chr11 89815334 89815388 -60968165 - L2 LINE L2 -368 2945 2894 2387 88 0 7 chr11 89815388 89815696 -60967857 + AluY SINE Alu 1 306 -5 2007 286 67 46 chr11 89815696 89816158 -60967395 - L2 LINE L2 -419 2894 2375 548 278 35 6 chr11 89816168 89816337 -60967216 - MIR SINE MIR -76 186 13 328 282 19 10 chr11 89816579 89816682 -60966871 + MER5A DNA MER1_type 36 139 -50 330 200 62 0 chr11 89816818 89816898 -60966655 + MER5A DNA MER1_type 9 93 -96 306 0 0 0 chr11 89817259 89817293 -60966260 + (A)n Simple_repeat Simple_repeat 1 34 0 403 200 219 0 chr11 89817293 89817398 -60966155 + MER5A DNA MER1_type 61 188 -1 665 282 42 14 chr11 89817508 89817724 -60965829 - MIR SINE MIR -39 223 2 425 319 123 6 chr11 89818223 89818386 -60965167 - MIR SINE MIR -56 206 25 2238 119 0 0 chr11 89818434 89818737 -60964816 + AluY SINE Alu 1 303 -8 1380 214 102 30 chr11 89819322 89819686 -60963867 - MSTD LTR MaLR -6 390 1 1535 219 24 61 chr11 89820313 89820692 -60962861 - MLT1A1 LTR MaLR 0 365 1 286 284 105 11 chr11 89821213 89821308 -60962245 - L2 LINE L2 -15 3298 3195 228 67 0 0 chr11 89821755 89821785 -60961768 + (CAATT)n Simple_repeat Simple_repeat 5 34 0 288 0 0 0 chr11 89821936 89821968 -60961585 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 1984 131 7 7 chr11 89821997 89822302 -60961251 - AluSx SINE Alu -7 305 1 339 194 143 20 chr11 89822351 89822449 -60961104 + MIR SINE MIR 53 162 -100 753 284 5 0 chr11 89822614 89822808 -60960745 + MIR SINE MIR 56 250 -12 1383 62 0 11 chr11 89823513 89823692 -60959861 + AluY SINE Alu 132 308 -3 480 254 42 14 chr11 89824305 89824447 -60959106 - MIR3 SINE MIR -20 188 43 343 292 0 31 chr11 89824490 89824620 -60958933 + L1MC4a LINE L1 4877 5002 -1144 30 59 0 0 chr11 89824653 89824704 -60958849 + AT_rich Low_complexity Low_complexity 1 51 0 588 291 27 27 chr11 89825357 89825618 -60957935 + L1MC4a LINE L1 5352 5612 -2196 1482 205 26 68 chr11 89825649 89826029 -60957524 + MLT1A1 LTR MaLR 2 365 0 741 286 17 4 chr11 89827134 89827372 -60956181 + L1MC4a LINE L1 5679 5919 -1889 753 226 91 36 chr11 89827456 89827677 -60955876 - MIR SINE MIR -28 234 2 226 215 0 31 chr11 89827787 89827852 -60955701 + HAL1b LINE L1 1279 1341 -7 195 42 0 0 chr11 89827864 89827888 -60955665 + (TG)n Simple_repeat Simple_repeat 1 24 0 207 302 186 0 chr11 89828474 89828560 -60954993 + L2 LINE L2 3203 3304 -9 646 297 40 20 chr11 89828582 89828831 -60954722 - MIR SINE MIR 0 262 9 990 271 121 12 chr11 89829587 89829927 -60953626 + LTR16A LTR ERVL 52 428 -22 312 143 0 48 chr11 89830013 89830076 -60953477 + L1PA16 LINE L1 6107 6166 0 181 315 110 0 chr11 89830587 89830660 -60952893 + MIR SINE MIR 89 169 -93 683 268 28 14 chr11 89830664 89830877 -60952676 - MIR SINE MIR -30 232 17 216 175 25 0 chr11 89830938 89830978 -60952575 + L2 LINE L2 3214 3254 -18 2078 232 41 103 chr11 89831553 89832278 -60951275 - MER97b DNA MER1_type? -6 888 234 2521 182 37 2 chr11 89832278 89832733 -60950820 + L1PB4 LINE L1 5686 6156 0 2078 232 41 103 chr11 89832733 89832954 -60950599 - MER97b DNA MER1_type? -660 234 1 253 321 25 0 chr11 89832975 89833056 -60950497 - MIR SINE MIR -25 237 155 * 307 186 129 0 chr11 89833044 89833114 -60950439 + MIR SINE MIR 184 262 0 2357 181 77 7 chr11 89833152 89833594 -60949959 - MER70B LTR ERVL -102 476 4 394 288 40 15 chr11 89833596 89833754 -60949799 - MIR SINE MIR -32 176 6 354 314 34 17 chr11 89834186 89834304 -60949249 + L2 LINE L2 3180 3299 -14 345 308 85 0 chr11 89834343 89834473 -60949080 + MIR SINE MIR 48 188 -74 1598 151 0 0 chr11 89834494 89834726 -60948827 + AluJb SINE Alu 1 232 -80 216 0 0 0 chr11 89834746 89834770 -60948783 + (A)n Simple_repeat Simple_repeat 1 24 0 206 299 69 46 chr11 89835209 89835296 -60948257 - L2 LINE L2 -83 3189 3101 2550 163 65 2 chr11 89836564 89836964 -60946589 - MSTB LTR MaLR -1 425 1 199 300 50 0 chr11 89837348 89837408 -60946145 - L2 LINE L2 -89 3224 3162 222 62 0 0 chr11 89837536 89837568 -60945985 + (TC)n Simple_repeat Simple_repeat 1 32 0 330 331 67 17 chr11 89837988 89838019 -60945534 - MIR SINE MIR -73 189 161 2083 106 0 65 chr11 89838019 89838341 -60945212 - AluSx SINE Alu -9 303 3 330 331 67 17 chr11 89838341 89838487 -60945066 - MIR SINE MIR -101 161 3 720 217 38 0 chr11 89840631 89840788 -60942765 - MER5A DNA MER1_type -4 185 23 710 278 81 17 chr11 89841254 89841488 -60942065 - MIR SINE MIR 0 262 14 590 277 21 34 chr11 89841678 89841913 -60941640 - LTR33 LTR ERVL -2 519 288 2034 224 18 29 chr11 89842060 89842550 -60941003 + MLT1E2 LTR MaLR 137 621 -5 244 330 34 8 chr11 89842562 89842680 -60940873 - LTR33 LTR ERVL -272 249 129 3450 206 93 32 chr11 89842741 89842928 -60940625 - MER69 DNA AcHobo 0 2526 2352 1898 163 71 0 chr11 89842928 89843253 -60940300 - MER7A DNA MER2_type 0 346 1 3450 206 93 32 chr11 89843253 89844079 -60939474 - MER69 DNA AcHobo -174 2352 1451 2910 200 40 56 chr11 89844094 89844823 -60938730 - MER69 DNA AcHobo -1809 717 1 753 256 32 99 chr11 89844853 89845208 -60938345 - MLT1J1 LTR MaLR 0 446 120 2009 113 0 0 chr11 89845208 89845482 -60938071 + AluSq SINE Alu 25 298 -15 753 256 32 99 chr11 89845482 89845529 -60938024 - MLT1J1 LTR MaLR -326 120 71 383 296 0 53 chr11 89846129 89846281 -60937272 - MIR SINE MIR -43 219 76 221 246 45 127 chr11 89846340 89846450 -60937103 - MIR SINE MIR -70 192 92 22 35 0 0 chr11 89846579 89846608 -60936945 + AT_rich Low_complexity Low_complexity 1 29 0 277 296 102 36 chr11 89847229 89847425 -60936128 - MIR SINE MIR -7 255 47 484 259 86 46 chr11 89847454 89847651 -60935902 - MIR SINE MIR -19 243 39 509 221 138 94 chr11 89849125 89849306 -60934247 - MER91A DNA MER1_type 0 196 8 295 294 54 0 chr11 89849857 89849949 -60933604 + MER117 DNA MER1_type 101 197 0 245 261 14 14 chr11 89850066 89850135 -60933418 + L2 LINE L2 3244 3312 -1 343 319 77 22 chr11 89850196 89850378 -60933175 + L2 LINE L2 3076 3267 -5 306 320 74 0 chr11 89851109 89851231 -60932322 - L2 LINE L2 -1 3271 3141 1893 188 50 39 chr11 89851871 89852329 -60931224 - MLT1C LTR MaLR -4 463 1 2043 85 35 0 chr11 89852572 89852832 -60930721 - AluSx SINE Alu -10 302 34 362 416 4 13 chr11 89853687 89853913 -60929640 - L2 LINE L2 -538 2776 2553 324 255 10 39 chr11 89853929 89854031 -60929522 - MER112 DNA MER1_type -1 259 161 21 95 0 0 chr11 89854072 89854135 -60929418 + AT_rich Low_complexity Low_complexity 1 63 0 450 343 111 36 chr11 89854366 89854758 -60928795 - L2 LINE L2 -956 2358 1924 2269 60 0 34 chr11 89854758 89855075 -60928478 + AluY SINE Alu 1 311 0 450 343 111 36 chr11 89855075 89855152 -60928401 - L2 LINE L2 -1390 1924 1854 422 275 22 0 chr11 89855157 89855248 -60928305 + MER81 DNA DNA 22 114 0 2279 104 3 0 chr11 89855946 89856243 -60927310 + AluSq SINE Alu 1 298 -15 1205 167 48 9 chr11 89856852 89857062 -60926491 + MER20 DNA MER1_type 2 219 0 331 228 173 47 chr11 89857162 89857247 -60926306 + MIR SINE MIR 53 161 -101 2099 114 75 36 chr11 89857247 89857608 -60925945 - THE1C LTR MaLR 0 375 1 331 228 173 47 chr11 89857608 89857649 -60925904 + MIR SINE MIR 161 195 -67 27 49 0 0 chr11 89860722 89860763 -60922790 + GC_rich Low_complexity Low_complexity 1 41 0 27 0 0 0 chr11 89861161 89861188 -60922365 + GC_rich Low_complexity Low_complexity 1 27 0 462 250 119 12 chr11 89861584 89861744 -60921809 - MIR SINE MIR 0 262 86 293 298 114 8 chr11 89862329 89862460 -60921093 + MIR SINE MIR 47 191 -71 447 189 11 33 chr11 89862580 89862670 -60920883 - Tigger5 DNA MER2_type -1 2322 2235 297 149 0 21 chr11 89862676 89862723 -60920830 - Tigger5 DNA MER2_type -2276 47 2 6189 49 17 19 chr11 89862917 89863667 -60919886 + L1PA5 LINE L1 5406 6154 0 333 304 83 30 chr11 89864208 89864376 -60919177 + MIR SINE MIR 32 208 -54 267 264 272 8 chr11 89864364 89864489 -60919064 + MIR SINE MIR 94 251 -11 * 475 312 35 12 chr11 89864661 89864834 -60918719 + MIR SINE MIR 21 197 -65 430 375 128 7 chr11 89864947 89865243 -60918310 - L2 LINE L2 -9 3263 2932 1077 236 69 16 chr11 89866223 89866680 -60916873 - MLT1H1 LTR MaLR 0 555 23 713 239 17 34 chr11 89866681 89866915 -60916638 - L1MC5 LINE L1 -430 7531 7302 2262 91 7 3 chr11 89867118 89867415 -60916138 + AluSg SINE Alu 1 298 -12 566 220 168 21 chr11 89867693 89867884 -60915669 - L1MC5 LINE L1 -1900 5908 5690 354 381 34 51 chr11 89867988 89868282 -60915271 - L2 LINE L2 -1 3271 2983 22 0 0 0 chr11 89868712 89868734 -60914819 + AT_rich Low_complexity Low_complexity 1 22 0 2936 152 154 115 chr11 89868819 89869192 -60914361 + L1MC3 LINE L1 6707 7064 -721 245 301 11 11 chr11 89869192 89869285 -60914268 + MLT1L LTR MaLR 31 123 -444 2936 152 154 115 chr11 89869285 89869681 -60913872 + L1MC3 LINE L1 7064 7602 -183 2309 252 48 49 chr11 89869698 89870125 -60913428 + HAL1 LINE L1 1213 1641 -866 1599 188 11 7 chr11 89870125 89870437 -60913116 - AluJb SINE Alu 0 313 1 2309 252 48 49 chr11 89870437 89870758 -60912795 + HAL1 LINE L1 1641 1961 -546 839 244 88 93 chr11 89870880 89871290 -60912263 + MLT1L LTR MaLR 200 607 -8 332 234 32 0 chr11 89871324 89871418 -60912135 + HAL1 LINE L1 1983 2079 -428 715 158 26 53 chr11 89871846 89871998 -60911555 + L1MB7 LINE L1 6014 6161 -23 1232 164 0 14 chr11 89872053 89872266 -60911287 + AluJo SINE Alu 84 293 -19 9559 127 11 25 chr11 89872885 89873620 -60909933 + L1MA2 LINE L1 3645 4389 -1915 3386 71 7 18 chr11 89873620 89874069 -60909484 + L1PA12 LINE L1 5725 6168 0 9559 127 11 25 chr11 89874069 89874086 -60909467 + L1MA2 LINE L1 4389 4405 -1899 207 0 0 0 chr11 89874086 89874109 -60909444 + (CA)n Simple_repeat Simple_repeat 2 24 0 9559 127 11 25 chr11 89874109 89874752 -60908801 + L1MA2 LINE L1 4405 5055 -1249 2101 142 0 13 chr11 89874752 89875068 -60908485 - AluSx SINE Alu 0 312 1 9559 127 11 25 chr11 89875068 89876331 -60907222 + L1MA2 LINE L1 5055 6266 -38 3567 110 34 10 chr11 89876331 89876830 -60906723 - MER9 LTR ERVK 0 511 1 9559 127 11 25 chr11 89876830 89876869 -60906684 + L1MA2 LINE L1 6266 6304 0 2397 102 0 3 chr11 89876950 89877263 -60906290 - AluSq SINE Alu -1 312 1 1555 201 45 3 chr11 89877296 89877649 -60905904 + L1ME2 LINE L1 5777 6144 -20 474 276 88 22 chr11 89878843 89879067 -60904486 - MIR SINE MIR -10 252 8 298 303 0 0 chr11 89879087 89879153 -60904400 - L2 LINE L2 -6 3307 3242 328 326 59 76 chr11 89879219 89879455 -60904098 - L2 LINE L2 0 3272 3041 6639 176 22 6 chr11 89879509 89881172 -60902381 + L1MC1 LINE L1 4651 6333 0 285 282 261 21 chr11 89881644 89881786 -60901767 + MIR3 SINE MIR 10 185 -23 465 196 75 8 chr11 89882284 89882417 -60901136 - MER117 DNA MER1_type -35 162 21 679 276 86 37 chr11 89882469 89882795 -60900758 + LTR16A LTR ERVL 10 351 -99 269 291 91 36 chr11 89883137 89883247 -60900306 + MIR SINE MIR 36 151 -57 354 281 169 6 chr11 89883250 89883428 -60900125 + LTR37B LTR ERV1 7 213 -255 429 109 0 0 chr11 89883515 89883579 -60899974 + (TA)n Simple_repeat Simple_repeat 2 65 0 576 172 39 8 chr11 89883584 89883712 -60899841 + LTR37A LTR ERV1 282 413 -13 244 272 22 43 chr11 89883980 89884072 -60899481 - MIR SINE MIR -161 101 12 387 289 71 57 chr11 89884236 89884447 -60899106 + MIR SINE MIR 20 233 -29 25 0 0 0 chr11 89885185 89885210 -60898343 + AT_rich Low_complexity Low_complexity 1 25 0 550 322 137 24 chr11 89886881 89887216 -60896337 + L3 LINE CR1 1132 1504 -73 615 143 50 34 chr11 89887325 89887444 -60896109 - MER115 DNA AcHobo 0 693 573 333 338 56 30 chr11 89887457 89887655 -60895898 + L1MDa LINE L1 28 230 -6310 2144 249 55 6 chr11 89888136 89888815 -60894738 + L1M4 LINE L1 3020 3731 -2415 3076 64 3 8 chr11 89888835 89889211 -60894342 - L1PA7 LINE L1 0 6154 5781 5463 55 16 5 chr11 89889311 89890419 -60893134 - L1PA8 LINE L1 -220 5952 4833 3191 42 3 11 chr11 89890419 89890784 -60892769 + L1PA4 LINE L1 5778 6155 0 2379 101 88 2 chr11 89890785 89891182 -60892371 + LTR15 LTR ERV1 24 454 -39 8041 96 10 48 chr11 89891191 89892870 -60890683 - L1P3 LINE L1 -4006 2455 841 2241 93 0 13 chr11 89892870 89893180 -60890373 - AluSg1 SINE Alu -3 306 1 8041 96 10 48 chr11 89893180 89893366 -60890187 - L1P3 LINE L1 -5620 841 649 3417 143 20 0 chr11 89893371 89893958 -60889595 + L1MA5 LINE L1 5700 6298 -2 25 31 0 0 chr11 89893967 89893999 -60889554 + AT_rich Low_complexity Low_complexity 1 32 0 3246 147 34 24 chr11 89894023 89894695 -60888858 + L1MA6 LINE L1 5599 6277 -23 760 232 49 13 chr11 89894710 89894934 -60888619 + MER95 LTR ERV 169 400 -31 1075 79 172 49 chr11 89894941 89895144 -60888409 + LTR8 LTR ERV1 357 584 -107 321 413 13 0 chr11 89895192 89895347 -60888206 - L2 LINE L2 -1974 1340 1184 269 282 82 0 chr11 89895337 89895447 -60888106 + MIR SINE MIR 65 183 -79 * 452 265 15 7 chr11 89895944 89896080 -60887473 + Charlie2 DNA MER1_type 1 137 -2725 257 254 28 14 chr11 89896153 89896224 -60887329 + CT-rich Low_complexity Low_complexity 3 74 0 1595 228 184 12 chr11 89896593 89897089 -60886464 + L1MC4 LINE L1 6460 7040 -1002 2084 127 13 7 chr11 89897089 89897397 -60886156 + AluSq SINE Alu 1 310 -3 1667 243 111 12 chr11 89897444 89898040 -60885513 + L1MC4 LINE L1 7238 7892 -150 33 25 0 0 chr11 89898091 89898131 -60885422 + AT_rich Low_complexity Low_complexity 1 40 0 1007 194 75 99 chr11 89898252 89898609 -60884944 + Charlie2 DNA MER1_type 2231 2595 -267 1943 76 79 0 chr11 89898609 89898914 -60884639 - AluY SINE Alu 0 327 1 1007 194 75 99 chr11 89898914 89898964 -60884589 + Charlie2 DNA MER1_type 2595 2645 -217 2207 120 0 13 chr11 89898964 89899280 -60884273 - AluSx SINE Alu 0 312 1 1007 194 75 99 chr11 89899280 89899486 -60884067 + Charlie2 DNA MER1_type 2645 2832 -30 304 165 0 69 chr11 89899487 89899719 -60883834 + AluJo SINE Alu 1 299 -3 803 199 72 8 chr11 89899873 89900109 -60883444 - MER33 DNA MER1_type -22 302 52 5629 114 43 3 chr11 89900119 89901263 -60882290 - L1PA13 LINE L1 -2 6161 4961 303 175 111 0 chr11 89901266 89901329 -60882224 - MER3 DNA MER1_type -97 112 43 1484 220 66 40 chr11 89901372 89901890 -60881663 - Charlie2a DNA MER1_type -1850 1012 482 338 177 10 73 chr11 89902434 89902530 -60881023 - Charlie2a DNA MER1_type -2624 158 69 966 229 42 0 chr11 89902540 89902802 -60880751 - L1M4 LINE L1 -1092 5054 4782 * 1485 182 65 1 chr11 89902799 89903289 -60880264 + L1M4 LINE L1 5092 5613 -561 15001 159 29 17 chr11 89903295 89907576 -60875977 + L1M1 LINE L1 23 5098 -2467 1993 151 3 16 chr11 89907576 89907881 -60875672 + AluSx SINE Alu 1 301 -11 15001 159 29 17 chr11 89907881 89907922 -60875631 + L1M1 LINE L1 5098 5137 -2428 810 150 14 21 chr11 89907925 89908103 -60875450 - AluJb SINE Alu 0 321 145 239 292 71 26 chr11 89908350 89908463 -60875090 - L2 LINE L2 -865 2449 2332 41 0 0 0 chr11 89908463 89908504 -60875049 + AT_rich Low_complexity Low_complexity 1 41 0 308 287 11 0 chr11 89908565 89908652 -60874901 - L1MC4 LINE L1 -1340 6702 6615 600 146 0 0 chr11 89908668 89908757 -60874796 - FLAM_C SINE Alu -19 124 36 189 195 0 0 chr11 89908801 89908842 -60874711 + (TATG)n Simple_repeat Simple_repeat 4 44 0 975 276 229 14 chr11 89908868 89909357 -60874196 - L2 LINE L2 -985 2329 1736 1567 180 49 3 chr11 89909470 89909814 -60873739 - L1MC2 LINE L1 -11 6333 5974 1543 124 135 17 chr11 89909814 89910266 -60873287 + MER51A LTR ERV1 1 634 0 4684 195 72 23 chr11 89910266 89912343 -60871210 - L1MC2 LINE L1 -367 5977 3773 333 350 0 17 chr11 89912549 89912666 -60870887 + MIR SINE MIR 10 124 -138 3318 115 29 68 chr11 89912694 89913313 -60870240 + L1PB4 LINE L1 5550 6144 -12 21 0 0 0 chr11 89913497 89913518 -60870035 + AT_rich Low_complexity Low_complexity 1 21 0 440 221 0 19 chr11 89913798 89913904 -60869649 + MIR SINE MIR 104 206 -56 200 185 0 56 chr11 89914407 89914461 -60869092 + CT-rich Low_complexity Low_complexity 2 52 0 2342 100 0 3 chr11 89914747 89915056 -60868497 + AluSg SINE Alu 1 308 -2 245 290 241 2 chr11 89915142 89915278 -60868275 - MIR SINE MIR -52 156 4 238 298 43 11 chr11 89916147 89916241 -60867312 - MIR SINE MIR -70 192 96 409 350 8 0 chr11 89917262 89917379 -60866174 - L2 LINE L2 -5 3267 3150 294 213 67 0 chr11 89917489 89917564 -60865989 + L2 LINE L2 3150 3229 -43 1112 191 5 0 chr11 89917720 89917914 -60865639 + AluJo SINE Alu 1 195 -117 196 410 51 13 chr11 89919153 89919309 -60864244 + MIR SINE MIR 31 192 -70 2156 141 0 0 chr11 89920215 89920527 -60863026 - AluSx SINE Alu 0 312 1 278 121 0 17 chr11 89920860 89920918 -60862635 + (CA)n Simple_repeat Simple_repeat 1 57 0 281 200 44 44 chr11 89921128 89921218 -60862335 - MER112 DNA MER1_type -38 222 133 456 19 0 0 chr11 89921247 89921300 -60862253 + (TG)n Simple_repeat Simple_repeat 2 54 0 1947 129 11 0 chr11 89921353 89921681 -60861872 + AluJo SINE Alu 1 331 0 500 236 47 8 chr11 89921801 89921928 -60861625 + FLAM_A SINE Alu 1 132 -1 23 0 0 0 chr11 89922115 89922138 -60861415 + AT_rich Low_complexity Low_complexity 1 23 0 3653 271 128 30 chr11 89922622 89924082 -60859471 + L2 LINE L2 18 1621 -1693 857 210 15 70 chr11 89924087 89924359 -60859194 - L1M4 LINE L1 -611 5573 5317 241 95 0 0 chr11 89924501 89924543 -60859010 - L1MB3 LINE L1 0 6183 6142 328 275 50 38 chr11 89925812 89925972 -60857581 + MIR SINE MIR 95 256 -6 9449 223 18 49 chr11 89926319 89927686 -60855867 - L1PA15-16 LINE L1 -1617 5232 3824 1563 202 3 34 chr11 89927686 89928008 -60855545 - AluJb SINE Alu 0 312 1 9449 223 18 49 chr11 89928008 89930013 -60853540 - L1PA15-16 LINE L1 -3025 3824 2044 303 85 0 0 chr11 89930013 89930060 -60853493 + (TG)n Simple_repeat Simple_repeat 2 48 0 9449 223 18 49 chr11 89930060 89931125 -60852428 - L1PA15-16 LINE L1 -4805 2044 947 1084 224 53 60 chr11 89931338 89931584 -60851969 + L1MC5 LINE L1 7335 7581 -380 2257 105 3 10 chr11 89931584 89931890 -60851663 + AluSq SINE Alu 1 304 -9 1084 224 53 60 chr11 89931890 89932223 -60851330 + L1MC5 LINE L1 7581 7910 -51 630 250 25 21 chr11 89932225 89932461 -60851092 + L1ME3 LINE L1 4944 5180 -966 971 254 41 15 chr11 89932469 89932808 -60850745 + L1ME3 LINE L1 5427 5774 -390 548 164 9 0 chr11 89934828 89934938 -60848615 + GA-rich Low_complexity Low_complexity 2 112 0 1285 232 40 21 chr11 89934939 89935318 -60848235 + L1ME3 LINE L1 5757 6142 -20 691 182 153 18 chr11 89935881 89936051 -60847502 + MLT1A1 LTR MaLR 173 365 0 2112 209 99 4 chr11 89936136 89936671 -60846882 + L1MC4 LINE L1 6460 7045 -997 2032 223 99 5 chr11 89936673 89937300 -60846253 + L1MC4 LINE L1 7227 7912 -130 492 129 0 0 chr11 89937349 89937419 -60846134 + AluJ/FRAM SINE Alu 221 290 -22 312 177 0 38 chr11 89937598 89937677 -60845876 - MER105 DNA DNA -72 132 57 184 322 23 11 chr11 89937832 89937919 -60845634 - L2 LINE L2 -833 2481 2394 250 185 102 111 chr11 89938135 89938243 -60845310 + L2 LINE L2 3162 3268 -4 238 277 54 71 chr11 89938257 89938346 -60845207 - L2 LINE L2 -561 2753 2665 1295 153 19 5 chr11 89938346 89938561 -60844992 - MER20 DNA MER1_type -1 218 1 238 277 54 71 chr11 89938561 89938583 -60844970 - L2 LINE L2 -649 2665 2644 451 337 58 74 chr11 89939775 89940033 -60843520 + L2 LINE L2 2926 3179 -93 214 319 118 8 chr11 89940398 89940517 -60843036 + MIR3 SINE MIR 76 207 -1 25 65 0 0 chr11 89940589 89940635 -60842918 + AT_rich Low_complexity Low_complexity 1 46 0 238 339 128 14 chr11 89940664 89940882 -60842671 + L2 LINE L2 2814 3056 -216 634 301 28 24 chr11 89940899 89941148 -60842405 + MIR SINE MIR 13 262 0 183 340 93 21 chr11 89941206 89941303 -60842250 + L2 LINE L2 3133 3236 -36 218 328 86 9 chr11 89941446 89941562 -60841991 - MIR SINE MIR -74 188 64 216 0 0 0 chr11 89941631 89941655 -60841898 + (T)n Simple_repeat Simple_repeat 1 24 0 2298 166 27 5 chr11 89941814 89942500 -60841053 - L1P5 LINE L1 -620 5531 4826 2072 116 7 14 chr11 89942512 89942824 -60840729 - AluSx SINE Alu 0 312 1 725 249 38 39 chr11 89943290 89943433 -60840120 + MIR SINE MIR 19 161 -101 7693 163 67 117 chr11 89943433 89945281 -60838272 + MER52A LTR ERV1 1 1755 0 725 249 38 39 chr11 89945281 89945377 -60838176 + MIR SINE MIR 161 256 -6 1630 176 7 7 chr11 89945678 89945957 -60837596 - AluJb SINE Alu -33 279 1 235 290 0 0 chr11 89945960 89946022 -60837531 - MER5A DNA MER1_type -40 149 88 25 65 0 0 chr11 89946120 89946166 -60837387 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr11 89946234 89946255 -60837298 + AT_rich Low_complexity Low_complexity 1 21 0 295 258 163 28 chr11 89946277 89946455 -60837098 + L1MC4 LINE L1 7710 7911 -131 236 173 0 19 chr11 89946459 89946511 -60837042 - LTR66 LTR ERVL -171 439 389 237 262 87 19 chr11 89946516 89946619 -60836934 + L1MC5 LINE L1 7808 7917 -44 201 293 181 8 chr11 89947598 89947731 -60835822 + MIR SINE MIR 101 256 -6 289 219 16 0 chr11 89948260 89948324 -60835229 - MER103 DNA DNA -12 154 90 344 244 24 0 chr11 89948428 89948510 -60835043 - MER103 DNA DNA -72 94 11 281 217 0 54 chr11 89949348 89949405 -60834148 + (CATATA)n Simple_repeat Simple_repeat 2 54 -34 1767 178 0 7 chr11 89949405 89949697 -60833856 + AluJo SINE Alu 1 290 -22 281 217 0 54 chr11 89949697 89949731 -60833822 + (CATATA)n Simple_repeat Simple_repeat 54 88 0 2631 158 36 5 chr11 89949771 89950182 -60833371 + MSTB LTR MaLR 1 424 -2 774 269 148 21 chr11 89950231 89950569 -60832984 + HAL1 LINE L1 13 393 -2114 442 254 41 24 chr11 89950617 89950787 -60832766 + L1MC5 LINE L1 7688 7772 -13 521 302 76 9 chr11 89950875 89951100 -60832453 + HAL1 LINE L1 573 812 -1695 260 85 203 0 chr11 89951094 89951153 -60832400 - L1MB7 LINE L1 0 6184 6114 * 1620 141 15 11 chr11 89951179 89951449 -60832104 - L1MB8 LINE L1 -53 6125 5855 2642 211 108 34 chr11 89951454 89952288 -60831265 + HAL1 LINE L1 803 1698 -809 1371 179 56 0 chr11 89952288 89952539 -60831014 + AluJo SINE Alu 36 300 -12 856 153 7 27 chr11 89952872 89953044 -60830509 - AluJb SINE Alu 0 312 157 307 228 73 29 chr11 89953073 89953209 -60830344 - L1MC5 LINE L1 -184 7777 7636 3157 116 21 11 chr11 89953227 89953693 -60829860 + L1PB2 LINE L1 5681 6151 0 1774 183 0 3 chr11 89953714 89954004 -60829549 + AluJb SINE Alu 2 290 -22 2184 122 3 0 chr11 89954014 89954310 -60829243 + AluSx SINE Alu 1 297 -15 2377 129 0 73 chr11 89954327 89954738 -60828815 + MLT1B LTR MaLR 10 390 0 439 297 128 19 chr11 89954744 89955010 -60828543 - L1MC5 LINE L1 -394 7567 7273 2338 104 3 0 chr11 89955018 89955325 -60828228 - AluSp SINE Alu -5 308 1 751 227 0 0 chr11 89955994 89956126 -60827427 - FLAM_A SINE Alu 0 133 2 231 36 0 0 chr11 89956551 89956579 -60826974 + (T)n Simple_repeat Simple_repeat 1 28 0 2392 109 0 3 chr11 89956775 89957087 -60826466 - AluSx SINE Alu -1 311 1 325 263 61 40 chr11 89957091 89957190 -60826363 + L3 LINE CR1 688 788 -789 390 247 168 44 chr11 89957205 89957411 -60826142 - MIR3 SINE MIR 0 262 9 189 216 54 0 chr11 89958426 89958463 -60825090 - L2 LINE L2 -12 3301 3263 * 400 236 220 0 chr11 89958436 89958593 -60824960 - MIR SINE MIR -18 244 54 192 125 0 0 chr11 89958649 89958681 -60824872 + (GAAAA)n Simple_repeat Simple_repeat 3 34 0 666 287 70 9 chr11 89958718 89958948 -60824605 - MIR SINE MIR -12 250 7 569 301 60 6 chr11 89959704 89959887 -60823666 - MIR SINE MIR -17 245 53 2157 129 0 3 chr11 89959887 89960189 -60823364 - AluSx SINE Alu -11 301 1 759 302 159 13 chr11 89960241 89960860 -60822693 - L2 LINE L2 0 3272 2559 41 48 0 0 chr11 89960907 89960969 -60822584 + AT_rich Low_complexity Low_complexity 1 62 0 2249 110 0 0 chr11 89960979 89961271 -60822282 - AluSx SINE Alu -20 292 1 252 304 170 0 chr11 89961300 89961412 -60822141 - L2 LINE L2 -803 2511 2381 616 310 80 57 chr11 89961494 89961881 -60821672 + L3 LINE CR1 1180 1575 -2 411 291 108 13 chr11 89962064 89962222 -60821331 + MIR SINE MIR 16 188 -74 2334 112 0 0 chr11 89962260 89962573 -60820980 + AluSq SINE Alu 1 313 0 461 241 70 43 chr11 89962574 89962761 -60820792 - MIR SINE MIR 0 262 71 214 174 0 22 chr11 89962904 89962950 -60820603 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 1635 173 0 0 chr11 89963118 89963378 -60820175 + AluJb SINE Alu 1 260 -52 226 301 48 48 chr11 89963951 89964028 -60819525 - MARNA DNA Mariner -259 327 248 2231 99 3 13 chr11 89964028 89964332 -60819221 + AluSp SINE Alu 1 301 -12 226 301 48 48 chr11 89964332 89964400 -60819153 - MARNA DNA Mariner -337 249 182 2093 131 0 7 chr11 89964633 89964930 -60818623 + AluSx SINE Alu 1 295 -17 431 202 12 0 chr11 89965330 89965414 -60818139 + L1ME3A LINE L1 6025 6109 -61 26 82 0 0 chr11 89965414 89965475 -60818078 + AT_rich Low_complexity Low_complexity 1 61 0 2081 113 41 7 chr11 89965479 89965770 -60817783 + AluSx SINE Alu 1 301 -11 2115 115 13 13 chr11 89965992 89966297 -60817256 + AluSx SINE Alu 1 305 -7 1324 253 82 66 chr11 89966315 89966735 -60816818 + L1MC4 LINE L1 7315 7753 -289 1692 200 204 39 chr11 89966735 89967201 -60816352 + MLT1H LTR MaLR 4 546 -3 1324 253 82 66 chr11 89967201 89967496 -60816057 + L1MC4 LINE L1 7753 8042 0 873 214 28 16 chr11 89968970 89969152 -60814401 - AluJo SINE Alu -128 184 1 453 304 36 14 chr11 89969314 89969452 -60814101 + MIR SINE MIR 47 187 -75 487 283 7 14 chr11 89969568 89969706 -60813847 + MIR3 SINE MIR 71 207 -1 451 190 33 74 chr11 89970079 89970145 -60813408 + MIR3 SINE MIR 93 153 -55 761 180 144 36 chr11 89970145 89970212 -60813341 + MER58C DNA MER1_type 1 59 -2361 1766 169 0 10 chr11 89970212 89970514 -60813039 - AluJo SINE Alu -11 301 3 761 180 144 36 chr11 89970514 89970640 -60812913 + MER58C DNA MER1_type 59 215 0 451 190 33 74 chr11 89970640 89970694 -60812859 + MIR3 SINE MIR 153 208 0 782 179 49 0 chr11 89971690 89971813 -60811740 + FLAM_C SINE Alu 2 130 -13 1635 141 48 0 chr11 89971937 89972206 -60811347 + AluJb SINE Alu 17 298 -14 2293 93 0 3 chr11 89972852 89973143 -60810410 + AluSc SINE Alu 2 291 -18 1411 140 0 23 chr11 89973203 89973424 -60810129 - AluJo SINE Alu -12 300 85 1704 178 24 17 chr11 89973698 89973990 -60809563 + AluJb SINE Alu 1 294 -18 512 224 11 62 chr11 89974378 89974557 -60808996 + MER104 DNA Tc2 7 176 -4 520 121 0 0 chr11 89974595 89974661 -60808892 + AluSg/x SINE Alu 214 279 -30 1018 274 133 32 chr11 89974682 89975058 -60808495 + MLT1J2 LTR MaLR 1 414 -36 2383 97 0 0 chr11 89975728 89976027 -60807526 - AluSc SINE Alu -8 301 3 4835 95 8 0 chr11 89976029 89976661 -60806892 + L1PB2 LINE L1 5515 6151 0 1704 172 7 3 chr11 89976706 89976991 -60806562 - AluJb SINE Alu -26 286 1 233 314 25 59 chr11 89977357 89977475 -60806078 + MIR3 SINE MIR 14 127 -81 218 270 108 9 chr11 89977503 89977614 -60805939 + L2 LINE L2 1610 1731 -1583 2422 293 113 25 chr11 89977671 89977880 -60805673 + L2 LINE L2 1705 1894 -1419 2089 154 0 0 chr11 89977880 89978192 -60805361 - AluJb SINE Alu 0 312 1 2422 293 113 25 chr11 89978192 89979185 -60804368 + L2 LINE L2 1894 3010 -303 829 142 24 7 chr11 89979187 89979493 -60804060 + CT-rich Low_complexity Low_complexity 1 311 0 1590 194 7 0 chr11 89979509 89979782 -60803771 - AluJo SINE Alu -37 275 1 552 279 139 44 chr11 89979782 89980076 -60803477 + L2 LINE L2 2992 3313 0 265 270 26 61 chr11 89980078 89980193 -60803360 + MIR SINE MIR 124 234 -28 2219 128 0 3 chr11 89980663 89980975 -60802578 + AluSx SINE Alu 1 311 -1 727 177 3 221 chr11 89981326 89981648 -60801905 - MIR SINE MIR -8 254 3 290 222 133 22 chr11 89982784 89982874 -60800679 + L1ME4a LINE L1 5959 6058 -63 438 317 73 34 chr11 89983057 89983385 -60800168 - L1ME4a LINE L1 -218 5903 5563 270 220 121 0 chr11 89983485 89983576 -60799977 - L1ME4a LINE L1 -45 6076 5975 1549 201 33 7 chr11 89983580 89983879 -60799674 - AluJo SINE Alu -5 307 1 825 165 0 0 chr11 89983981 89984108 -60799445 + FLAM_C SINE Alu 1 127 -16 383 216 9 69 chr11 89984120 89984236 -60799317 - L1ME4a LINE L1 -432 5689 5581 263 49 24 0 chr11 89984402 89984443 -60799110 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 2078 111 28 0 chr11 89984682 89984971 -60798582 + AluSq SINE Alu 1 297 -16 382 241 98 30 chr11 89986863 89986996 -60796557 + MIR3 SINE MIR 25 166 -42 856 272 89 57 chr11 89987618 89988512 -60795041 - L1MA6 LINE L1 -403 5897 4937 687 242 58 16 chr11 89988516 89988706 -60794847 + MIR SINE MIR 47 244 -18 297 360 43 0 chr11 89988767 89988928 -60794625 + MIR SINE MIR 39 206 -56 512 115 52 172 chr11 89989636 89989828 -60793725 - MER53 DNA DNA -20 169 1 415 191 111 116 chr11 89990272 89990328 -60793225 + L1ME4a LINE L1 5918 5973 -148 2332 96 7 0 chr11 89990328 89990629 -60792924 + AluSp SINE Alu 1 303 -10 415 191 111 116 chr11 89990629 89990771 -60792782 + L1ME4a LINE L1 5973 6115 -6 325 264 44 0 chr11 89990810 89990901 -60792652 - MIR SINE MIR -55 207 113 768 213 52 0 chr11 89991258 89991394 -60792159 - FRAM SINE Alu -32 144 2 820 229 103 18 chr11 89991941 89992164 -60791389 + MIR SINE MIR 20 261 -1 1614 148 92 14 chr11 89992575 89992858 -60790695 + AluJo SINE Alu 6 310 -2 2422 33 40 20 chr11 89992978 89993277 -60790276 - AluY SINE Alu -6 305 1 184 407 44 0 chr11 89993281 89993394 -60790159 - L3b LINE CR1 -343 1240 1123 188 234 141 0 chr11 89993758 89993822 -60789731 - L2 LINE L2 -4 3268 3196 * 721 240 15 44 chr11 89993815 89994019 -60789534 + MIR SINE MIR 12 209 -53 380 321 35 51 chr11 89994186 89994525 -60789028 - L2 LINE L2 -164 3108 2776 411 326 65 11 chr11 89994535 89994719 -60788834 - MIR SINE MIR -35 227 34 265 308 56 42 chr11 89994762 89994905 -60788648 + MIR SINE MIR 78 222 -40 1362 97 0 0 chr11 89995484 89995659 -60787894 - AluSg/x SINE Alu -13 297 123 324 329 164 26 chr11 89995845 89996192 -60787361 - L2 LINE L2 -49 3223 2829 552 229 106 18 chr11 89997642 89997812 -60785741 + MIR3 SINE MIR 17 201 -7 468 305 24 55 chr11 89998125 89998289 -60785264 - MIR3 SINE MIR -21 187 29 214 286 264 11 chr11 89999129 89999220 -60784333 - MIR3 SINE MIR -80 128 15 285 317 10 10 chr11 89999646 89999750 -60783803 + CT-rich Low_complexity Low_complexity 1 104 0 500 227 84 79 chr11 90000577 90000780 -60782773 - MIR SINE MIR -10 252 49 1224 169 165 0 chr11 90001041 90001277 -60782276 + AluJo SINE Alu 1 275 -37 324 0 0 0 chr11 90001277 90001313 -60782240 + (TG)n Simple_repeat Simple_repeat 2 37 0 186 43 0 0 chr11 90001320 90001343 -60782210 + (GA)n Simple_repeat Simple_repeat 2 24 0 182 217 203 14 chr11 90001995 90002064 -60781489 - L2 LINE L2 -19 3253 3172 222 364 52 0 chr11 90002187 90002264 -60781289 + L2 LINE L2 3134 3214 -58 2051 127 16 23 chr11 90002519 90002827 -60780726 - AluJb SINE Alu -6 306 1 401 114 71 0 chr11 90003214 90003284 -60780269 + L1MB3 LINE L1 6109 6183 0 236 336 56 56 chr11 90003686 90003811 -60779742 - L2 LINE L2 -1 3271 3147 235 208 0 38 chr11 90004111 90004164 -60779389 + L2 LINE L2 3186 3236 -36 248 211 174 28 chr11 90004841 90004950 -60778603 + MIR SINE MIR 68 192 -70 412 270 139 58 chr11 90004954 90005213 -60778340 - L2 LINE L2 -10 3303 3024 289 277 36 0 chr11 90005485 90005568 -60777985 - MIR SINE MIR -108 154 69 1067 255 16 0 chr11 90005743 90005986 -60777567 + MIR SINE MIR 3 249 -13 270 132 0 0 chr11 90006091 90006144 -60777409 + (T)n Simple_repeat Simple_repeat 1 53 0 361 244 0 0 chr11 90007290 90007372 -60776181 - MIR SINE MIR -108 154 73 1573 217 47 76 chr11 90007687 90008065 -60775488 - L1MC5 LINE L1 -37 7924 7537 1590 152 115 0 chr11 90008065 90008335 -60775218 + AluJo SINE Alu 1 301 -11 1573 217 47 76 chr11 90008335 90008785 -60774768 - L1MC5 LINE L1 -424 7537 6927 1917 106 55 7 chr11 90008785 90009059 -60774494 + AluSx SINE Alu 1 287 -25 1307 170 41 69 chr11 90009068 90009386 -60774167 - L1MC5 LINE L1 -1020 6941 6633 1059 285 82 71 chr11 90009978 90010314 -60773239 - L1MC4a LINE L1 -1212 6596 6265 1651 145 13 40 chr11 90010314 90010617 -60772936 + AluJb SINE Alu 1 295 -17 1059 285 82 71 chr11 90010617 90011156 -60772397 - L1MC4a LINE L1 -1543 6265 5711 2301 102 0 7 chr11 90011165 90011470 -60772083 - AluSg SINE Alu -7 303 1 249 157 12 0 chr11 90013143 90013228 -60770325 + CT-rich Low_complexity Low_complexity 1 86 0 186 316 40 13 chr11 90014356 90014432 -60769121 + L2 LINE L2 3231 3308 -5 180 0 0 0 chr11 90015832 90015852 -60767701 + (TTG)n Simple_repeat Simple_repeat 2 21 0 278 331 214 6 chr11 90016239 90016599 -60766954 + L3 LINE CR1 1066 1500 -77 342 288 218 0 chr11 90017614 90017784 -60765769 + MIR SINE MIR 56 262 0 402 298 145 50 chr11 90017889 90018151 -60765402 - L3b LINE CR1 -26 1557 1271 195 42 0 0 chr11 90019087 90019111 -60764442 + (A)n Simple_repeat Simple_repeat 1 24 0 2837 149 38 4 chr11 90019786 90020282 -60763271 - L1MB7 LINE L1 -19 6165 5653 416 299 78 19 chr11 90020992 90021146 -60762407 + MIR3 SINE MIR 17 179 -29 420 266 24 124 chr11 90021264 90021433 -60762120 + MIR3 SINE MIR 32 183 -25 365 233 0 0 chr11 90022038 90022111 -60761442 - MER116 DNA Mariner 0 80 8 4634 135 59 68 chr11 90022129 90023562 -60759991 - pTR5 LTR ERV1 -143 2295 741 333 245 4 4 chr11 90024479 90024563 -60758990 + MIR SINE MIR 65 147 -62 1359 291 57 17 chr11 90024576 90024757 -60758796 - L2 LINE L2 -1 3312 3140 1619 154 26 4 chr11 90024757 90025024 -60758529 + AluJb SINE Alu 1 273 -39 1359 291 57 17 chr11 90025024 90025595 -60757958 - L2 LINE L2 -173 3140 2530 530 178 10 0 chr11 90025729 90025830 -60757723 - L1MC5 LINE L1 -117 7844 7743 24 32 0 0 chr11 90025834 90025865 -60757688 + AT_rich Low_complexity Low_complexity 1 31 0 830 160 0 8 chr11 90025866 90025991 -60757562 - FLAM_C SINE Alu -8 125 2 397 232 48 32 chr11 90025992 90026117 -60757436 - L1MC5 LINE L1 -205 7756 7630 882 210 0 0 chr11 90026159 90026321 -60757232 - FRAM SINE Alu -13 163 2 1323 179 3 105 chr11 90026469 90026794 -60756759 + AluJo SINE Alu 1 292 -10 345 296 122 29 chr11 90026965 90027137 -60756416 - MLT1J LTR MaLR -320 191 4 401 283 58 51 chr11 90027146 90027243 -60756310 + MIR SINE MIR 17 123 -139 2527 62 0 0 chr11 90027243 90027547 -60756006 - AluY SINE Alu -7 304 1 401 283 58 51 chr11 90027547 90027626 -60755927 + MIR SINE MIR 123 200 -62 1773 164 74 0 chr11 90027835 90028134 -60755419 + L1PA13 LINE L1 1 321 -6466 * 13130 137 38 50 chr11 90028131 90029964 -60753589 + L1PA13 LINE L1 3404 5258 -1556 829 125 70 0 chr11 90029964 90030092 -60753461 + AluSc SINE Alu 154 290 -19 2205 113 14 0 chr11 90030093 90030386 -60753167 + AluSx SINE Alu 1 297 -15 13130 137 38 50 chr11 90030386 90031546 -60752007 + L1PA13 LINE L1 5257 6480 -334 985 193 0 18 chr11 90031546 90031700 -60751853 + AluSg/x SINE Alu 130 282 -28 2845 60 0 14 chr11 90031700 90032053 -60751500 + L1PA13 LINE L1 5812 6159 -4 985 193 0 18 chr11 90032053 90032069 -60751484 + AluSg/x SINE Alu 282 297 -13 216 222 0 0 chr11 90032083 90032119 -60751434 + L2 LINE L2 3219 3254 -18 296 272 99 62 chr11 90033174 90033359 -60750194 + MIR SINE MIR 7 213 -49 1496 255 59 22 chr11 90033725 90034266 -60749287 - L1MC5 LINE L1 -475 7486 6926 1257 193 0 32 chr11 90034270 90034519 -60749034 - AluJo SINE Alu -6 306 66 754 194 31 0 chr11 90034524 90034653 -60748900 - FLAM_A SINE Alu 0 133 1 23 78 0 0 chr11 90034668 90034719 -60748834 + AT_rich Low_complexity Low_complexity 1 51 0 459 309 64 10 chr11 90034801 90035005 -60748548 - L1MC5 LINE L1 -2055 5753 5539 1199 189 120 77 chr11 90035006 90035356 -60748197 - MLT1A1 LTR MaLR 0 365 1 236 300 89 11 chr11 90036558 90036648 -60746905 - MIR SINE MIR -56 206 110 186 279 82 0 chr11 90036641 90036702 -60746851 + MIR SINE MIR 140 205 -57 * 227 239 15 15 chr11 90036798 90036865 -60746688 + MIR SINE MIR 193 259 -3 34528 93 9 59 chr11 90036899 90043370 -60740183 + L1PA6 LINE L1 12 6154 0 24 0 0 0 chr11 90043532 90043556 -60739997 + AT_rich Low_complexity Low_complexity 1 24 0 1802 180 3 0 chr11 90043600 90043889 -60739664 - AluJb SINE Alu -22 290 1 668 238 115 32 chr11 90043912 90044479 -60739074 + L1MEd LINE L1 1216 1877 -4730 630 12 50 0 chr11 90044516 90044596 -60738957 + L1PA5 LINE L1 6069 6152 -2 315 256 38 69 chr11 90044663 90044823 -60738730 + L1MEd LINE L1 1774 1928 -4498 654 275 130 2 chr11 90044951 90045512 -60738041 + L1MEd LINE L1 2234 2828 -3598 301 217 36 0 chr11 90045551 90045634 -60737919 + L1MEd LINE L1 2812 2897 -3529 318 214 65 48 chr11 90045670 90045838 -60737715 + L1MEd LINE L1 3070 3240 -3186 3362 158 22 9 chr11 90045982 90046622 -60736931 - L1MA4 LINE L1 -1 6299 5652 2450 148 80 12 chr11 90046846 90047654 -60735899 - L1MA4 LINE L1 -627 5664 4796 5006 221 62 63 chr11 90047654 90048538 -60735015 + MER52A LTR ERV1 65 949 -806 2084 147 33 25 chr11 90048538 90048899 -60734654 + THE1B LTR MaLR 1 364 0 11610 92 9 4 chr11 90048899 90050470 -60733083 + THE1B-int LTR MaLR 1 1580 0 1821 117 126 36 chr11 90050470 90050804 -60732749 + THE1B LTR MaLR 1 364 0 5006 221 62 63 chr11 90050804 90051608 -60731945 + MER52A LTR ERV1 946 1753 -2 7417 201 56 25 chr11 90051609 90053049 -60730504 - L1 LINE L1 -1369 4777 3384 2261 125 97 5 chr11 90053049 90053441 -60730112 + MSTA LTR MaLR 1 428 0 7417 201 56 25 chr11 90053441 90053765 -60729788 - L1 LINE L1 -2762 3384 3072 2322 102 0 0 chr11 90053765 90054058 -60729495 - AluSg SINE Alu -17 293 1 7417 201 56 25 chr11 90054058 90054420 -60729133 - L1 LINE L1 -3074 3072 2723 1282 165 3 153 chr11 90054420 90054759 -60728794 - AluJo SINE Alu -24 288 1 7417 201 56 25 chr11 90054759 90055103 -60728450 - L1 LINE L1 -3423 2723 2183 709 201 0 8 chr11 90055120 90055254 -60728299 + AluJo/FLAM SINE Alu 1 133 -179 1899 164 7 13 chr11 90055257 90055567 -60727986 + AluJb SINE Alu 1 308 -4 1555 137 125 0 chr11 90056980 90057228 -60726325 - AluJb SINE Alu -23 289 11 521 249 110 37 chr11 90057332 90057958 -60725595 + L1MC4 LINE L1 7262 7918 -124 2323 106 0 0 chr11 90058066 90058359 -60725194 - AluSx SINE Alu -19 293 1 245 336 97 18 chr11 90058872 90058985 -60724568 + L2 LINE L2 3187 3308 -5 1920 140 3 26 chr11 90062305 90062613 -60720940 + AluJb SINE Alu 1 301 -11 320 286 180 28 chr11 90062756 90062934 -60720619 + MIR SINE MIR 57 261 -1 194 246 16 0 chr11 90062955 90063016 -60720537 + GA-rich Low_complexity Low_complexity 2 63 0 28 0 0 0 chr11 90063441 90063469 -60720084 + AT_rich Low_complexity Low_complexity 1 28 0 2471 60 0 3 chr11 90064244 90064542 -60719011 - AluY SINE Alu -14 297 1 2375 99 0 3 chr11 90065465 90065777 -60717776 + AluY SINE Alu 1 311 0 656 253 142 0 chr11 90067211 90067373 -60716180 - MER5A DNA MER1_type -1 188 4 430 147 21 21 chr11 90067458 90067553 -60716000 - Charlie1b DNA MER1_type -1 522 428 1918 160 3 7 chr11 90067579 90067879 -60715674 + AluJb SINE Alu 1 299 -13 380 182 0 0 chr11 90067888 90067965 -60715588 - L1MA9 LINE L1 -34 6278 6202 2307 85 7 0 chr11 90067967 90068261 -60715292 - AluY SINE Alu -15 296 1 1775 195 0 3 chr11 90068350 90068653 -60714900 - AluJo SINE Alu -10 302 1 1676 147 48 11 chr11 90068695 90069049 -60714504 - Charlie1b DNA MER1_type -112 411 45 1912 166 3 10 chr11 90069121 90069435 -60714118 - AluJb SINE Alu 0 312 1 718 219 27 0 chr11 90070708 90070895 -60712658 + L1PB1 LINE L1 6 197 -6666 12363 186 37 22 chr11 90070895 90072089 -60711464 + L1PB1 LINE L1 1396 2571 -4296 2459 83 3 3 chr11 90072089 90072402 -60711151 + AluSq SINE Alu 1 313 0 12363 186 37 22 chr11 90072402 90073943 -60709610 + L1PB1 LINE L1 2571 4088 -2779 2156 92 27 0 chr11 90073943 90074237 -60709316 + AluY SINE Alu 1 302 -9 12363 186 37 22 chr11 90074237 90076854 -60706699 + L1PB1 LINE L1 4088 6864 -3 663 302 41 37 chr11 90077087 90077332 -60706221 + MIR SINE MIR 7 252 -10 892 252 91 4 chr11 90077449 90077679 -60705874 - MIR SINE MIR -11 251 2 522 291 63 5 chr11 90077714 90077903 -60705650 - MIR SINE MIR 0 262 63 878 187 126 0 chr11 90077950 90078132 -60705421 + MER6B DNA MER2_type 1 205 -5 384 323 89 0 chr11 90078267 90078391 -60705162 - L2 LINE L2 0 3272 3138 197 355 66 0 chr11 90078710 90078786 -60704767 - L2 LINE L2 -34 3279 3199 1303 149 152 29 chr11 90079633 90079774 -60703779 + MER46B DNA MER2_type 3 81 -2650 2228 104 7 0 chr11 90079774 90080071 -60703482 + AluSq SINE Alu 1 299 -14 1303 149 152 29 chr11 90080071 90080245 -60703308 + MER46B DNA MER2_type 81 232 -4 1600 180 65 4 chr11 90080464 90080742 -60702811 + AluJo SINE Alu 1 295 -17 15011 108 35 17 chr11 90080766 90083141 -60700412 + Tigger1 DNA MER2_type 1 2418 0 1190 193 0 5 chr11 90083180 90083387 -60700166 + AluJb SINE Alu 86 291 -21 24 0 0 0 chr11 90083387 90083411 -60700142 + AT_rich Low_complexity Low_complexity 1 24 0 2067 120 38 3 chr11 90083449 90083740 -60699813 + AluSx SINE Alu 1 301 -11 2196 176 29 43 chr11 90084427 90084488 -60699065 - LTR54 LTR ERV1 0 510 450 3779 93 35 4 chr11 90084488 90085025 -60698528 + MER41A LTR ERV1 1 554 0 2196 176 29 43 chr11 90085025 90085480 -60698073 - LTR54 LTR ERV1 -60 450 1 1180 321 53 23 chr11 90085617 90086178 -60697375 + L2 LINE L2 2720 3306 -7 1702 168 21 3 chr11 90086179 90086465 -60697088 + AluJo SINE Alu 1 291 -21 186 71 0 0 chr11 90087894 90087922 -60695631 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 377 264 124 47 chr11 90088210 90088339 -60695214 - L2 LINE L2 0 3272 3134 239 180 236 0 chr11 90088510 90088599 -60694954 + L1ME4a LINE L1 6010 6119 -2 842 169 121 6 chr11 90089275 90089441 -60694112 - MER5A DNA MER1_type -1 188 4 632 300 36 60 chr11 90090584 90091059 -60692494 + L2 LINE L2 2402 3054 -218 304 276 98 41 chr11 90091099 90091222 -60692331 + L2 LINE L2 3184 3313 0 298 344 92 53 chr11 90091308 90091721 -60691832 - L2 LINE L2 -351 2963 2535 478 279 39 52 chr11 90092903 90093136 -60690417 + MIR SINE MIR 20 249 -13 303 267 176 38 chr11 90094584 90094794 -60688759 + MIR SINE MIR 20 258 -4 739 161 17 0 chr11 90094826 90094944 -60688609 - FLAM_C SINE Alu -23 120 1 752 172 0 22 chr11 90095020 90095154 -60688399 - AluJo SINE Alu -177 135 5 21 0 0 0 chr11 90095779 90095800 -60687753 + AT_rich Low_complexity Low_complexity 1 21 0 211 100 0 60 chr11 90096718 90096768 -60686785 + (TTTTTA)n Simple_repeat Simple_repeat 2 48 0 1344 170 31 92 chr11 90097156 90097338 -60686215 - MLT2D LTR ERVL -49 365 218 2039 107 0 11 chr11 90097338 90097618 -60685935 - AluSx SINE Alu -7 305 29 1344 170 31 92 chr11 90097618 90097824 -60685729 - MLT2D LTR ERVL -196 218 1 201 191 48 0 chr11 90098435 90098477 -60685076 - L3 LINE CR1 -8 1569 1526 200 189 54 0 chr11 90098449 90098486 -60685067 - MIR3 SINE MIR -28 180 142 * 773 144 56 0 chr11 90098577 90098702 -60684851 + FLAM_C SINE Alu 2 133 -10 471 296 127 27 chr11 90098720 90098940 -60684613 + MIR SINE MIR 21 262 0 447 311 8 0 chr11 90099415 90099534 -60684019 + MIR3 SINE MIR 50 169 -39 184 242 65 32 chr11 90099550 90099612 -60683941 - L2 LINE L2 -20 3252 3189 23 0 0 0 chr11 90099776 90099799 -60683754 + AT_rich Low_complexity Low_complexity 1 23 0 382 315 46 15 chr11 90100095 90100225 -60683328 - MIR SINE MIR -7 255 122 1821 187 0 3 chr11 90100229 90100529 -60683024 - AluJo SINE Alu -12 300 2 355 320 66 48 chr11 90100660 90100994 -60682559 - MLT1I LTR MaLR 0 409 70 23 0 0 0 chr11 90101595 90101618 -60681935 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 90101732 90101755 -60681798 + AT_rich Low_complexity Low_complexity 1 23 0 196 264 0 19 chr11 90101937 90101990 -60681563 - MIR SINE MIR -64 198 147 284 291 24 0 chr11 90102092 90102219 -60681334 + L1ME4a LINE L1 5768 5897 -224 216 160 13 160 chr11 90102241 90102316 -60681237 - L2 LINE L2 -4 3309 3246 * 4822 243 145 27 chr11 90102311 90104043 -60679510 - L2 LINE L2 -338 2976 1041 252 164 0 0 chr11 90104463 90104530 -60679023 + (CTG)n Simple_repeat Simple_repeat 3 69 0 317 177 21 21 chr11 90104554 90104650 -60678903 + CT-rich Low_complexity Low_complexity 4 99 0 1716 146 29 54 chr11 90104650 90104965 -60678588 - AluJo SINE Alu -5 307 1 3183 147 99 11 chr11 90105856 90106483 -60677070 - MER39 LTR ERV1 0 707 26 264 130 0 22 chr11 90106511 90106557 -60676996 - MER39 LTR ERV1 -662 45 1 688 325 76 31 chr11 90106628 90107010 -60676543 - L2 LINE L2 0 3272 2874 184 243 0 0 chr11 90107051 90107088 -60676465 - MIR SINE MIR -88 174 138 359 256 135 23 chr11 90107246 90107379 -60676174 - MIR SINE MIR -90 172 25 1862 138 10 17 chr11 90107466 90107756 -60675797 + AluJo SINE Alu 13 300 -12 334 309 101 23 chr11 90109130 90109347 -60674206 - MIR SINE MIR -17 245 12 1679 160 31 3 chr11 90109472 90109760 -60673793 - AluJb SINE Alu -15 297 2 24 32 0 0 chr11 90110544 90110575 -60672978 + AT_rich Low_complexity Low_complexity 1 31 0 301 300 11 126 chr11 90110643 90110920 -60672633 + L2 LINE L2 2936 3180 -92 189 0 0 0 chr11 90111162 90111183 -60672370 + (TG)n Simple_repeat Simple_repeat 2 22 0 1255 85 0 120 chr11 90111243 90111584 -60671969 + AluYa5 SINE Alu 1 300 -1 419 116 14 0 chr11 90111796 90111865 -60671688 + Tigger2 DNA MER2_type 1 70 -2648 2298 104 48 41 chr11 90111865 90112278 -60671275 + Tigger2 DNA MER2_type 2303 2718 0 258 209 15 0 chr11 90112906 90112973 -60670580 + MER112 DNA MER1_type 193 260 0 13857 105 20 7 chr11 90113416 90115498 -60668055 + L1P LINE L1 2 2111 -4035 1472 60 25 0 chr11 90115498 90115697 -60667856 - THE1A LTR MaLR -151 204 1 12127 82 5 0 chr11 90115699 90117269 -60666284 - THE1A-int LTR MaLR -2 1578 1 2732 74 6 0 chr11 90117269 90117622 -60665931 - THE1A LTR MaLR 0 355 1 297 261 293 5 chr11 90117725 90117913 -60665640 - MIR SINE MIR -13 249 8 259 333 85 63 chr11 90117974 90118244 -60665309 - L2 LINE L2 -184 3088 2813 262 326 155 16 chr11 90118390 90118519 -60665034 + L2 LINE L2 3125 3271 -1 420 314 71 71 chr11 90119256 90119360 -60664193 + L2 LINE L2 3019 3122 -191 2075 142 0 3 chr11 90119360 90119669 -60663884 - AluJo SINE Alu -2 310 3 420 314 71 71 chr11 90119669 90119844 -60663709 + L2 LINE L2 3121 3298 -15 22 0 0 0 chr11 90120991 90121013 -60662540 + AT_rich Low_complexity Low_complexity 1 22 0 263 295 237 6 chr11 90121103 90121276 -60662277 + L2 LINE L2 2836 3048 -224 1701 165 44 117 chr11 90121276 90121774 -60661779 - MLT1C LTR MaLR 0 467 6 1790 119 77 19 chr11 90121825 90122135 -60661418 - MER44D DNA MER2_type 0 609 12 394 289 137 24 chr11 90122192 90122403 -60661150 + L3 LINE CR1 1054 1288 -289 482 225 9 114 chr11 90122600 90122942 -60660611 + AluY SINE Alu 3 308 -3 446 270 16 8 chr11 90124424 90124550 -60659003 - L2 LINE L2 0 3313 3187 376 216 0 24 chr11 90124602 90124727 -60658826 + CT-rich Low_complexity Low_complexity 3 124 0 2093 151 3 3 chr11 90124729 90125040 -60658513 - AluJo SINE Alu -1 311 1 1916 155 3 7 chr11 90125050 90125354 -60658199 - AluSx SINE Alu -2 310 8 368 319 138 81 chr11 90125460 90125780 -60657773 + L2 LINE L2 2934 3271 -1 239 300 30 0 chr11 90125936 90126036 -60657517 - L1ME3A LINE L1 -118 6052 5950 191 245 61 0 chr11 90126157 90126206 -60657347 + L3 LINE CR1 1519 1570 -7 894 149 12 18 chr11 90126227 90126395 -60657158 + FRAM SINE Alu 1 166 -10 2449 73 0 7 chr11 90127092 90127394 -60656159 + AluSx SINE Alu 1 300 -12 359 351 48 0 chr11 90128942 90129107 -60654446 + MIR SINE MIR 70 242 -20 21 36 0 0 chr11 90129366 90129394 -60654159 + AT_rich Low_complexity Low_complexity 1 28 0 303 319 104 0 chr11 90129515 90129663 -60653890 + MIR3 SINE MIR 37 200 -8 599 312 102 0 chr11 90130017 90130232 -60653321 - MIR SINE MIR -6 256 20 914 176 50 11 chr11 90130897 90131079 -60652474 - MER5A DNA MER1_type 0 189 1 290 301 54 0 chr11 90131199 90131292 -60652261 + L2 LINE L2 3173 3270 -2 1220 157 12 60 chr11 90131957 90132205 -60651348 - MER46A DNA MER2_type 0 236 1 571 285 65 64 chr11 90132280 90132971 -60650582 - L1MC4 LINE L1 -370 7672 6999 593 302 35 24 chr11 90133135 90133390 -60650163 - L1MC4 LINE L1 -1068 6974 6717 1000 131 33 11 chr11 90133479 90133662 -60649891 + L1MA8 LINE L1 6100 6286 -5 333 202 0 43 chr11 90134258 90134352 -60649201 + L1M LINE L1 5290 5379 -791 191 35 0 35 chr11 90134483 90134512 -60649041 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 226 254 221 8 chr11 90134582 90134704 -60648849 + L2 LINE L2 3166 3313 0 315 284 69 10 chr11 90135010 90135112 -60648441 + L2 LINE L2 3156 3263 -9 645 258 79 6 chr11 90135743 90135921 -60647632 + MIR SINE MIR 2 192 -70 377 230 44 52 chr11 90136478 90136613 -60646940 + MER117 DNA MER1_type 2 135 -62 1081 213 31 4 chr11 90136664 90136889 -60646664 + MIR SINE MIR 31 261 -1 2341 45 45 0 chr11 90137061 90137347 -60646206 - AluY SINE Alu -12 299 1 3017 140 0 26 chr11 90137409 90137937 -60645616 - L1PA16 LINE L1 -1 6165 5652 911 127 22 8 chr11 90137956 90138090 -60645463 - AluJb SINE Alu -176 136 1 7829 177 12 32 chr11 90138090 90138472 -60645081 - L1PA16 LINE L1 -504 5662 5274 2400 66 3 3 chr11 90138472 90138777 -60644776 - AluY SINE Alu -6 305 1 7829 177 12 32 chr11 90138777 90140530 -60643023 - L1PA16 LINE L1 -892 5274 3558 22 35 0 0 chr11 90141327 90141356 -60642197 + AT_rich Low_complexity Low_complexity 1 29 0 329 214 17 34 chr11 90141478 90141595 -60641958 + MER113 DNA MER1_type? 6 120 -401 1404 221 91 20 chr11 90142412 90142918 -60640635 - MLT1F LTR MaLR 0 542 9 28 0 0 0 chr11 90143976 90144004 -60639549 + AT_rich Low_complexity Low_complexity 1 28 0 1004 247 40 48 chr11 90144282 90144655 -60638898 - L1ME3A LINE L1 -5 6165 5796 181 219 0 0 chr11 90144713 90144745 -60638808 + L2 LINE L2 3198 3229 -84 534 256 79 30 chr11 90145164 90145328 -60638225 + MIR SINE MIR 28 199 -63 221 284 11 68 chr11 90145320 90145408 -60638145 - MIR SINE MIR 0 262 180 * 487 298 53 44 chr11 90145545 90145773 -60637780 + MIR SINE MIR 2 231 -31 1731 169 47 3 chr11 90146220 90146516 -60637037 + AluJo SINE Alu 1 309 -3 1033 204 46 14 chr11 90146981 90147197 -60636356 - MER58A DNA MER1_type 0 224 2 2470 75 13 0 chr11 90149350 90149658 -60633895 - AluSx SINE Alu 0 312 1 964 150 0 13 chr11 90149660 90149813 -60633740 - FRAM SINE Alu -2 174 24 687 190 7 21 chr11 90149817 90149959 -60633594 + MIR SINE MIR 46 185 -77 334 241 12 0 chr11 90150129 90150212 -60633341 - U13 snRNA snRNA -2 102 19 210 211 56 28 chr11 90150254 90150325 -60633228 + MIR SINE MIR 111 183 -79 287 206 0 0 chr11 90150655 90150718 -60632835 + MER116 DNA Mariner 18 80 0 1801 167 14 7 chr11 90150790 90151084 -60632469 - AluJo SINE Alu -15 297 2 560 313 40 0 chr11 90151377 90151578 -60631975 + L1ME LINE L1 5536 5744 -377 385 304 94 29 chr11 90151596 90151767 -60631786 - L3 LINE CR1 -407 1170 989 251 275 25 0 chr11 90152550 90152630 -60630923 - MER103 DNA DNA -16 150 69 406 268 84 39 chr11 90153199 90153378 -60630175 + MIR SINE MIR 4 190 -72 393 258 55 106 chr11 90153476 90153693 -60629860 - L1MC4 LINE L1 -1 8041 7836 255 261 109 0 chr11 90153796 90153888 -60629665 - L1ME1 LINE L1 -86 6080 5979 231 277 225 80 chr11 90154067 90154453 -60629100 - L2 LINE L2 -4 3268 2827 257 306 10 41 chr11 90155018 90155116 -60628437 - L2 LINE L2 -1 3312 3218 344 238 0 24 chr11 90155217 90155301 -60628252 + MIR SINE MIR 125 206 -56 490 307 8 0 chr11 90155383 90155510 -60628043 + MIR SINE MIR 5 132 -130 24 0 0 0 chr11 90155947 90155971 -60627582 + AT_rich Low_complexity Low_complexity 1 24 0 504 281 50 62 chr11 90156082 90156324 -60627229 - MIR SINE MIR -23 239 1 1857 183 3 0 chr11 90157264 90157565 -60625988 + AluJb SINE Alu 1 302 -10 2352 95 0 3 chr11 90157895 90158201 -60625352 - AluY SINE Alu -6 305 1 2875 63 3 24 chr11 90158894 90159031 -60624522 - L1PA10 LINE L1 -3 6165 6027 2096 118 38 0 chr11 90159031 90159319 -60624234 - AluSq SINE Alu -14 299 1 2875 63 3 24 chr11 90159319 90159561 -60623992 - L1PA10 LINE L1 -141 6027 5794 786 257 0 0 chr11 90159832 90160034 -60623519 - MLT1A1 LTR MaLR 0 365 164 204 125 0 0 chr11 90160130 90160162 -60623391 + (CAT)n Simple_repeat Simple_repeat 2 33 0 316 242 40 61 chr11 90160194 90160293 -60623260 + L3 LINE CR1 1329 1425 -152 * 556 266 46 17 chr11 90160281 90160454 -60623099 + MIR SINE MIR 79 256 -6 1438 80 45 0 chr11 90160518 90160717 -60622836 - L1P3 LINE L1 -503 5651 5444 543 269 66 121 chr11 90160766 90161023 -60622530 + L2 LINE L2 3029 3271 -1 6666 67 21 0 chr11 90161324 90162389 -60621164 + L1PA7 LINE L1 5070 6154 0 235 304 207 15 chr11 90162536 90162671 -60620882 + MIR SINE MIR 29 189 -73 412 224 35 0 chr11 90162689 90162774 -60620779 + L2 LINE L2 3214 3301 -12 225 0 0 0 chr11 90163042 90163067 -60620486 + (T)n Simple_repeat Simple_repeat 1 25 0 2391 100 0 0 chr11 90163266 90163577 -60619976 - AluSx SINE Alu -1 311 1 328 241 28 110 chr11 90163775 90163920 -60619633 - MIR SINE MIR -56 206 74 2581 251 62 43 chr11 90164150 90165240 -60618313 - L2 LINE L2 -5 3308 2196 208 277 13 44 chr11 90165533 90165608 -60617945 - MIR3 SINE MIR -133 75 12 444 292 73 6 chr11 90165685 90165842 -60617711 + MIR SINE MIR 25 190 -67 3502 210 31 11 chr11 90165890 90166780 -60616773 + L1MB8 LINE L1 4368 5275 -871 218 315 34 56 chr11 90166973 90167062 -60616491 - MIR SINE MIR -156 106 20 4082 174 38 13 chr11 90167102 90167973 -60615580 + L1MB8 LINE L1 5286 6178 0 315 191 0 0 chr11 90168254 90168317 -60615236 + CT-rich Low_complexity Low_complexity 3 65 0 731 159 9 0 chr11 90168321 90168434 -60615119 - AluJb SINE Alu -197 115 2 315 290 178 0 chr11 90168435 90168536 -60615017 - MIR SINE MIR -62 146 36 25 0 0 0 chr11 90169921 90169946 -60613607 + AT_rich Low_complexity Low_complexity 1 25 0 212 350 38 0 chr11 90171227 90171307 -60612246 - MIR SINE MIR -120 142 60 717 171 120 19 chr11 90171608 90171766 -60611787 - MER5A DNA MER1_type -14 175 2 2348 69 14 0 chr11 90172275 90172563 -60610990 - AluSx SINE Alu -20 292 1 964 150 0 13 chr11 90172565 90172718 -60610835 - FRAM SINE Alu -2 174 24 687 190 7 21 chr11 90172722 90172864 -60610689 + MIR SINE MIR 46 185 -77 334 241 12 0 chr11 90173034 90173117 -60610436 - U13 snRNA snRNA -2 102 19 210 211 56 28 chr11 90173159 90173230 -60610323 + MIR SINE MIR 111 183 -79 287 206 0 0 chr11 90173560 90173623 -60609930 + MER116 DNA Mariner 18 80 0 1801 167 14 7 chr11 90173695 90173989 -60609564 - AluJo SINE Alu -15 297 2 560 313 40 0 chr11 90174282 90174483 -60609070 + L1ME LINE L1 5536 5744 -377 385 304 94 29 chr11 90174501 90174672 -60608881 - L3 LINE CR1 -407 1170 989 251 275 25 0 chr11 90175455 90175535 -60608018 - MER103 DNA DNA -16 150 69 406 268 84 39 chr11 90176104 90176283 -60607270 + MIR SINE MIR 4 190 -72 393 258 55 106 chr11 90176381 90176598 -60606955 - L1MC4 LINE L1 -1 8041 7836 255 261 109 0 chr11 90176701 90176793 -60606760 - L1ME1 LINE L1 -86 6080 5979 231 277 225 80 chr11 90176972 90177358 -60606195 - L2 LINE L2 -4 3268 2827 257 306 10 41 chr11 90177923 90178021 -60605532 - L2 LINE L2 -1 3312 3218 344 238 0 24 chr11 90178122 90178206 -60605347 + MIR SINE MIR 125 206 -56 490 307 8 0 chr11 90178288 90178415 -60605138 + MIR SINE MIR 5 132 -130 24 0 0 0 chr11 90178852 90178876 -60604677 + AT_rich Low_complexity Low_complexity 1 24 0 504 281 50 62 chr11 90178987 90179229 -60604324 - MIR SINE MIR -23 239 1 1857 183 3 0 chr11 90180169 90180470 -60603083 + AluJb SINE Alu 1 302 -10 23 0 0 0 chr11 90180935 90180958 -60602595 + GC_rich Low_complexity Low_complexity 1 23 0 1057 68 0 8 chr11 90180981 90181114 -60602439 - AluY SINE Alu -179 132 1 203 416 50 12 chr11 90181134 90181295 -60602258 - L2 LINE L2 -26 3287 3121 496 323 155 34 chr11 90181420 90181912 -60601641 - L2 LINE L2 -251 3062 2507 251 343 169 61 chr11 90182122 90182466 -60601087 + L2 LINE L2 2824 3204 -68 297 241 52 69 chr11 90182553 90182669 -60600884 + L2 LINE L2 3200 3313 0 1840 168 13 19 chr11 90182979 90183289 -60600264 + AluJb SINE Alu 1 308 -4 3221 152 22 21 chr11 90183508 90184087 -60599466 - LTR22 LTR ERVK 0 580 1 2209 92 0 7 chr11 90184183 90184467 -60599086 + AluSc SINE Alu 1 282 -27 351 0 0 0 chr11 90184467 90184506 -60599047 + (CA)n Simple_repeat Simple_repeat 2 40 0 272 181 72 24 chr11 90184696 90184779 -60598774 + MER103 DNA DNA 22 108 -58 527 80 0 45 chr11 90185778 90185866 -60597687 + L1PA8 LINE L1 6089 6172 0 1002 202 14 5 chr11 90186209 90186417 -60597136 + MER20 DNA MER1_type 1 210 -9 190 354 0 12 chr11 90186422 90186504 -60597049 - L3b LINE CR1 -217 1366 1286 186 286 0 0 chr11 90186617 90186659 -60596894 - L3 LINE CR1 -353 1224 1183 244 328 64 90 chr11 90186669 90186980 -60596573 - L2 LINE L2 -2 3270 2968 331 195 129 112 chr11 90187195 90187368 -60596185 - MIR SINE MIR -63 145 15 1826 89 20 8 chr11 90188196 90188442 -60595111 + AluSq SINE Alu 62 310 -3 3904 157 19 19 chr11 90188811 90189607 -60593946 - L1P LINE L1 -2065 4081 3286 6219 64 19 5 chr11 90189770 90190696 -60592857 + L1P LINE L1 3670 4608 -1538 1746 183 7 0 chr11 90191342 90191626 -60591927 + AluJb SINE Alu 1 286 -26 201 159 0 0 chr11 90192325 90192369 -60591184 + (CA)n Simple_repeat Simple_repeat 1 44 0 1030 248 39 55 chr11 90193692 90194127 -60589426 - MER90 LTR ERV1 -186 428 1 181 307 204 0 chr11 90195183 90195271 -60588282 + L2 LINE L2 3167 3272 0 315 284 69 10 chr11 90195577 90195679 -60587874 + L2 LINE L2 3156 3263 -9 379 285 92 0 chr11 90196310 90196440 -60587113 + MIR SINE MIR 2 143 -119 296 272 99 62 chr11 90197104 90197289 -60586264 - MIR SINE MIR -49 213 7 216 222 0 0 chr11 90198344 90198380 -60585173 - L2 LINE L2 -18 3254 3219 985 193 0 18 chr11 90198394 90198410 -60585143 - AluSg/x SINE Alu -13 297 282 2845 60 0 14 chr11 90198410 90198763 -60584790 - L1PA13 LINE L1 -4 6159 5812 985 193 0 18 chr11 90198763 90198917 -60584636 - AluSg/x SINE Alu -28 282 130 29564 117 24 86 chr11 90198917 90200077 -60583476 - L1PA13 LINE L1 -334 5829 4599 2252 109 14 0 chr11 90200077 90200371 -60583182 - AluSx SINE Alu -14 298 1 837 124 70 0 chr11 90200371 90200500 -60583053 - AluSc SINE Alu -18 291 154 29564 117 24 86 chr11 90200500 90205428 -60578125 - L1PA13 LINE L1 -1562 4601 12 227 239 15 15 chr11 90205462 90205529 -60578024 - MIR SINE MIR -3 259 193 186 279 82 0 chr11 90205625 90205686 -60577867 - MIR SINE MIR -57 205 140 * 236 300 89 11 chr11 90205679 90205769 -60577784 + MIR SINE MIR 110 206 -56 1199 189 120 77 chr11 90206971 90207321 -60576232 + MLT1A1 LTR MaLR 1 365 0 459 309 64 10 chr11 90207322 90207526 -60576027 + L1MC5 LINE L1 5539 5753 -2055 23 78 0 0 chr11 90207608 90207659 -60575894 + AT_rich Low_complexity Low_complexity 1 51 0 754 194 31 0 chr11 90207674 90207803 -60575750 + FLAM_A SINE Alu 1 133 0 1257 193 0 32 chr11 90207808 90208057 -60575496 + AluJo SINE Alu 66 306 -6 1030 244 48 7 chr11 90208061 90208356 -60575197 + L1MC5 LINE L1 6926 7232 -729 411 291 108 13 chr11 90308570 90308728 -60474825 + MIR SINE MIR 16 188 -74 2334 112 0 0 chr11 90308766 90309079 -60474474 + AluSq SINE Alu 1 313 0 461 241 70 43 chr11 90309080 90309267 -60474286 - MIR SINE MIR 0 262 71 214 174 0 22 chr11 90309410 90309456 -60474097 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 1635 173 0 0 chr11 90309624 90309884 -60473669 + AluJb SINE Alu 1 260 -52 226 301 48 48 chr11 90310457 90310534 -60473019 - MARNA DNA Mariner -259 327 248 2273 92 3 13 chr11 90310534 90310838 -60472715 + AluSp SINE Alu 1 301 -12 226 301 48 48 chr11 90310838 90310906 -60472647 - MARNA DNA Mariner -337 249 182 2093 131 0 7 chr11 90311139 90311436 -60472117 + AluSx SINE Alu 1 295 -17 431 202 12 0 chr11 90311836 90311920 -60471633 + L1ME3A LINE L1 6025 6109 -61 26 82 0 0 chr11 90311920 90311981 -60471572 + AT_rich Low_complexity Low_complexity 1 61 0 2081 113 41 7 chr11 90311985 90312276 -60471277 + AluSx SINE Alu 1 301 -11 2115 115 13 13 chr11 90312498 90312803 -60470750 + AluSx SINE Alu 1 305 -7 1324 253 82 66 chr11 90312821 90313241 -60470312 + L1MC4 LINE L1 7315 7753 -289 1692 200 204 39 chr11 90313241 90313707 -60469846 + MLT1H LTR MaLR 4 546 -3 1324 253 82 66 chr11 90313707 90314002 -60469551 + L1MC4 LINE L1 7753 8042 0 873 214 28 16 chr11 90315476 90315658 -60467895 - AluJo SINE Alu -128 184 1 453 304 36 14 chr11 90315820 90315958 -60467595 + MIR SINE MIR 47 187 -75 487 283 7 14 chr11 90316074 90316212 -60467341 + MIR3 SINE MIR 71 207 -1 277 242 30 0 chr11 90316585 90316651 -60466902 + MIR3 SINE MIR 93 160 -48 681 196 144 36 chr11 90316651 90316718 -60466835 + MER58C DNA MER1_type 1 59 -2361 1766 169 0 10 chr11 90316718 90317020 -60466533 - AluJo SINE Alu -11 301 3 681 196 144 36 chr11 90317020 90317146 -60466407 + MER58C DNA MER1_type 59 215 0 248 185 37 0 chr11 90317146 90317200 -60466353 + MIR3 SINE MIR 153 208 0 782 179 49 0 chr11 90318196 90318319 -60465234 + FLAM_C SINE Alu 2 130 -13 1635 141 48 0 chr11 90318443 90318712 -60464841 + AluJb SINE Alu 17 298 -14 2302 92 0 3 chr11 90319358 90319650 -60463903 + AluSc SINE Alu 2 292 -17 1411 140 0 23 chr11 90319708 90319929 -60463624 - AluJo SINE Alu -12 300 85 1704 178 24 17 chr11 90320203 90320495 -60463058 + AluJb SINE Alu 1 294 -18 512 224 11 62 chr11 90320883 90321062 -60462491 + MER104 DNA Tc2 7 176 -4 520 121 0 0 chr11 90321100 90321166 -60462387 + AluSg/x SINE Alu 214 279 -30 1018 274 133 32 chr11 90321187 90321563 -60461990 + MLT1J2 LTR MaLR 1 414 -36 194 332 101 39 chr11 90322422 90322630 -60460923 - MIR SINE MIR -37 225 5 527 298 92 26 chr11 90323392 90323605 -60459948 + MIR SINE MIR 20 244 -18 200 33 0 33 chr11 90324024 90324035 -60459518 + (TAAA)n Simple_repeat Simple_repeat 3 13 -18 1862 156 0 14 chr11 90324035 90324318 -60459235 + AluSx SINE Alu 1 279 -33 200 33 0 33 chr11 90324318 90324336 -60459217 + (TAAA)n Simple_repeat Simple_repeat 13 31 0 320 289 74 109 chr11 90324404 90324660 -60458893 + L2 LINE L2 3026 3272 0 1724 190 0 19 chr11 90324806 90325122 -60458431 + AluJb SINE Alu 1 310 -2 479 290 57 57 chr11 90325250 90325484 -60458069 + MIR SINE MIR 9 250 -12 1463 196 10 102 chr11 90325830 90326232 -60457321 + MLT1A1 LTR MaLR 1 365 0 2966 133 9 11 chr11 90326258 90326715 -60456838 - L1MB2 LINE L1 -19 6152 5697 216 289 0 0 chr11 90326761 90326806 -60456747 + L2 LINE L2 3264 3308 -5 426 278 0 17 chr11 90326892 90327007 -60456546 + MIR SINE MIR 23 135 -127 2461 153 87 63 chr11 90328743 90329454 -60454099 - L1MC4 LINE L1 0 8042 7269 346 274 59 0 chr11 90329457 90329559 -60453994 - MIR SINE MIR -115 147 40 1909 151 11 0 chr11 90329644 90329928 -60453625 - AluJb SINE Alu -25 287 1 834 215 135 7 chr11 90329928 90330202 -60453351 - L1MC4a LINE L1 -1815 5993 5685 320 280 37 68 chr11 90330256 90330449 -60453104 + MIR3 SINE MIR 4 193 -69 2029 227 109 77 chr11 90330455 90330615 -60452938 + L1MC4 LINE L1 6962 7115 -927 2067 110 31 14 chr11 90330615 90330906 -60452647 + AluSq SINE Alu 1 296 -17 2029 227 109 77 chr11 90330906 90331388 -60452165 + L1MC4 LINE L1 7115 7646 -396 2779 173 22 83 chr11 90331388 90331941 -60451612 + MLT2B3 LTR ERVL 1 517 -37 210 37 0 0 chr11 90331941 90331968 -60451585 + (TCCA)n Simple_repeat Simple_repeat 2 28 0 2779 173 22 83 chr11 90331968 90332004 -60451549 + MLT2B3 LTR ERVL 517 554 0 2029 227 109 77 chr11 90332004 90332286 -60451267 + L1MC4 LINE L1 7646 7917 -125 756 183 56 0 chr11 90332380 90332533 -60451020 - FLAM_A SINE Alu 0 160 1 233 214 71 14 chr11 90333348 90333409 -60450144 - MIR SINE MIR -83 179 112 2304 99 0 7 chr11 90333409 90333711 -60449842 + AluSx SINE Alu 1 300 -12 1468 134 110 72 chr11 90334807 90335098 -60448455 - AluJb SINE Alu -10 302 1 293 227 11 68 chr11 90335291 90335379 -60448174 - L3 LINE CR1 -82 1495 1413 1126 197 52 62 chr11 90335481 90335786 -60447767 - L1MC4 LINE L1 -255 7787 7486 1466 197 68 10 chr11 90335811 90336106 -60447447 + AluJb SINE Alu 1 312 0 219 36 0 0 chr11 90336106 90336134 -60447419 + (GGAAA)n Simple_repeat Simple_repeat 1 28 0 782 175 0 0 chr11 90336136 90336250 -60447303 - FLAM_C SINE Alu -28 115 2 395 211 0 0 chr11 90336250 90336326 -60447227 - L1MC4 LINE L1 -543 7499 7424 268 170 0 0 chr11 90336523 90336570 -60446983 - MIR SINE MIR -133 129 83 2049 122 3 7 chr11 90337246 90337542 -60446011 - AluSx SINE Alu -17 295 1 273 260 27 14 chr11 90337666 90337739 -60445814 - L2 LINE L2 0 3272 3199 184 317 183 0 chr11 90337856 90337938 -60445615 + L2 LINE L2 3134 3230 -42 316 290 49 49 chr11 90337988 90338150 -60445403 - MIR SINE MIR -96 166 5 780 304 99 67 chr11 90338180 90338400 -60445153 + L2 LINE L2 2311 2523 -749 2228 96 0 35 chr11 90338400 90338535 -60445018 + AluSq SINE Alu 1 139 -174 2135 115 14 7 chr11 90338535 90338831 -60444722 + AluSx SINE Alu 2 299 -13 2228 96 0 35 chr11 90338831 90339008 -60444545 + AluSq SINE Alu 139 302 -11 780 304 99 67 chr11 90339008 90339711 -60443842 + L2 LINE L2 2523 3255 -17 219 318 71 0 chr11 90339780 90339865 -60443688 - MIR SINE MIR -109 153 63 186 43 0 0 chr11 90340812 90340835 -60442718 + (GGGTG)n Simple_repeat Simple_repeat 3 25 0 1495 162 10 37 chr11 90343489 90343785 -60439768 + AluJb SINE Alu 1 288 -24 876 189 12 30 chr11 90344736 90344900 -60438653 + FRAM SINE Alu 1 160 -16 24 0 0 0 chr11 90345033 90345057 -60438496 + AT_rich Low_complexity Low_complexity 1 24 0 1897 145 14 0 chr11 90345199 90345496 -60438057 + AluSx SINE Alu 1 301 -11 2124 104 14 7 chr11 90345935 90346232 -60437321 + AluSq SINE Alu 1 299 -14 271 297 77 71 chr11 90346534 90346689 -60436864 - MIR3 SINE MIR -21 187 32 2346 102 0 0 chr11 90347147 90347450 -60436103 - AluSx SINE Alu -9 303 1 2145 90 28 7 chr11 90347753 90348043 -60435510 - AluSg SINE Alu -14 296 1 813 171 103 0 chr11 90348488 90348634 -60434919 - FAM SINE Alu -6 43 1 1952 139 14 3 chr11 90350317 90350612 -60432941 + AluSq SINE Alu 7 304 -9 811 179 90 7 chr11 90350612 90350757 -60432796 + AluJo/FRAM SINE Alu 137 293 -19 475 302 112 0 chr11 90351726 90351895 -60431658 + MIR SINE MIR 3 190 -72 761 176 15 0 chr11 90352200 90352331 -60431222 - AluSg SINE Alu -7 303 171 952 76 0 0 chr11 90352331 90352450 -60431103 - AluSg SINE Alu -191 119 1 201 275 43 14 chr11 90352563 90352632 -60430921 + MIR SINE MIR 31 101 -161 390 296 38 8 chr11 90352709 90352841 -60430712 + MER5A DNA MER1_type 4 139 -50 2818 133 13 27 chr11 90352852 90353302 -60430251 - MLT2A1 LTR ERVL 0 444 1 1539 125 40 40 chr11 90353478 90353782 -60429771 - AluY SINE Alu -7 304 1 636 131 10 10 chr11 90353782 90353881 -60429672 - AluY SINE Alu -177 134 36 1320 141 183 30 chr11 90353918 90354180 -60429373 + AluJo SINE Alu 1 302 0 847 210 12 0 chr11 90354406 90354573 -60428980 + AluJb SINE Alu 120 288 -24 1180 112 101 0 chr11 90354703 90354882 -60428671 + MER30 DNA MER1_type 1 197 -33 2236 78 10 20 chr11 90354936 90355232 -60428321 + AluSc SINE Alu 1 293 -16 1195 183 198 38 chr11 90355414 90355781 -60427772 - Charlie4a DNA MER1_type -1460 501 47 1891 141 10 14 chr11 90355781 90356072 -60427481 + AluSx SINE Alu 2 291 -21 1195 183 198 38 chr11 90356072 90356125 -60427428 - Charlie4a DNA MER1_type -1914 47 4 1796 176 0 0 chr11 90356467 90356756 -60426797 + AluJo SINE Alu 17 305 -7 1652 119 82 4 chr11 90357362 90357652 -60425901 - AluSx SINE Alu 0 312 1 245 320 64 48 chr11 90358115 90358240 -60425313 - L2 LINE L2 -5 3308 3182 376 167 10 42 chr11 90358834 90358930 -60424623 + L1MA4 LINE L1 6204 6296 -4 1793 164 28 0 chr11 90358964 90359251 -60424302 - AluJb SINE Alu -17 295 1 471 203 120 27 chr11 90359365 90359485 -60424068 - L1ME1 LINE L1 -33 6133 6021 915 138 0 44 chr11 90359553 90359712 -60423841 + AluSc SINE Alu 146 297 -12 605 202 101 0 chr11 90359889 90360008 -60423545 + FLAM_A SINE Alu 2 132 -1 1544 133 111 15 chr11 90360314 90360584 -60422969 + AluSg SINE Alu 1 296 -14 381 219 12 12 chr11 90360584 90360666 -60422887 + MIR3 SINE MIR 100 181 -27 188 282 167 0 chr11 90360883 90360961 -60422592 + MIR3 SINE MIR 115 205 -3 2140 106 3 50 chr11 90362192 90362512 -60421041 + AluSx SINE Alu 1 305 -7 2129 89 0 36 chr11 90362769 90363072 -60420481 - AluY SINE Alu -19 292 1 644 246 82 65 chr11 90363380 90363633 -60419920 - MIR SINE MIR -5 257 1 600 281 156 26 chr11 90364176 90364407 -60419146 + MIR SINE MIR 2 262 0 388 270 153 0 chr11 90364581 90364744 -60418809 - MIR SINE MIR 0 262 75 734 200 159 10 chr11 90364832 90365027 -60418526 - MER2 DNA MER2_type 0 345 122 1931 146 0 14 chr11 90365030 90365318 -60418235 + AluJb SINE Alu 3 286 -26 273 152 22 0 chr11 90365331 90365377 -60418176 - MER2 DNA MER2_type -209 136 90 1332 140 0 53 chr11 90365377 90365605 -60417948 - AluJo SINE Alu -11 301 86 285 150 0 0 chr11 90365606 90365646 -60417907 - MER2 DNA MER2_type -250 95 56 615 141 0 0 chr11 90365654 90365746 -60417807 + FRAM SINE Alu 72 163 -13 236 222 0 0 chr11 90365748 90365793 -60417760 - MER2 DNA MER2_type -300 45 1 500 208 62 8 chr11 90366365 90366495 -60417058 - Charlie7 DNA MER1_type -48 2564 2428 773 259 112 28 chr11 90366498 90367060 -60416493 - Charlie7 DNA MER1_type -1939 673 5 25 23 0 23 chr11 90367314 90367332 -60416221 + AT_rich Low_complexity Low_complexity 1 18 -24 2427 62 0 20 chr11 90367332 90367636 -60415917 - AluY SINE Alu -13 298 1 25 23 0 23 chr11 90367636 90367660 -60415893 + AT_rich Low_complexity Low_complexity 18 42 0 391 266 48 32 chr11 90367694 90367818 -60415735 + MIR SINE MIR 41 166 -96 218 221 59 44 chr11 90367844 90367912 -60415641 - MIR SINE MIR -16 246 178 921 269 69 27 chr11 90367918 90368296 -60415257 + MLT1J2 LTR MaLR 6 409 0 887 153 0 0 chr11 90369120 90369251 -60414302 - FLAM_C SINE Alu -2 131 1 568 148 0 0 chr11 90369333 90369421 -60414132 + AluSg/x SINE Alu 211 298 -12 254 167 56 56 chr11 90369428 90369500 -60414053 + L1 LINE L1 3857 3928 -2218 267 274 14 27 chr11 90369541 90369614 -60413939 + MIR SINE MIR 45 116 -92 585 252 129 58 chr11 90369668 90369812 -60413741 + L1M4 LINE L1 3697 3829 -2317 2306 86 0 6 chr11 90369812 90370126 -60413427 + AluSx SINE Alu 1 312 0 585 252 129 58 chr11 90370126 90370291 -60413262 + L1M4 LINE L1 3829 4028 -2118 1317 117 0 0 chr11 90370374 90370553 -60413000 + AluSg/x SINE Alu 125 303 -9 678 262 161 16 chr11 90370580 90370947 -60412606 + L1M4 LINE L1 4105 4524 -1622 2373 58 31 0 chr11 90371102 90371394 -60412159 + AluY SINE Alu 10 310 -1 311 319 76 14 chr11 90371583 90371727 -60411826 - MIR SINE MIR -64 198 46 222 256 18 173 chr11 90372015 90372109 -60411444 + MIR SINE MIR 118 176 -86 2277 102 3 3 chr11 90372109 90372414 -60411139 + AluSx SINE Alu 4 308 -4 222 256 18 173 chr11 90372414 90372487 -60411066 + MIR SINE MIR 176 259 -3 256 161 0 54 chr11 90372764 90372820 -60410733 - L2 LINE L2 -5 3267 3215 519 309 48 38 chr11 90372930 90373140 -60410413 + MIR SINE MIR 3 214 -48 2145 118 14 0 chr11 90373215 90373512 -60410041 - AluSp SINE Alu -12 301 1 263 28 28 0 chr11 90373595 90373631 -60409922 + (TAA)n Simple_repeat Simple_repeat 3 39 0 810 325 96 12 chr11 90374077 90374483 -60409070 - L2 LINE L2 0 3313 2874 1142 258 62 66 chr11 90374547 90375057 -60408496 - L2 LINE L2 -2 3311 2800 2167 123 3 0 chr11 90375057 90375359 -60408194 - AluSx SINE Alu -9 303 1 1142 258 62 66 chr11 90375359 90375591 -60407962 - L2 LINE L2 -513 2800 1706 407 204 49 14 chr11 90375598 90375713 -60407840 - L1MC4 LINE L1 -6 8036 7804 238 250 43 52 chr11 90375726 90375842 -60407711 - L1ME3A LINE L1 -5 6165 6051 1819 246 112 22 chr11 90376055 90377411 -60406142 - L1ME3A LINE L1 -204 5966 4475 766 267 42 13 chr11 90377940 90378251 -60405302 - L1ME3A LINE L1 -1647 4499 4180 361 346 15 19 chr11 90378318 90378523 -60405030 - L1M4 LINE L1 -1146 5000 4797 249 217 0 14 chr11 90378611 90378680 -60404873 - L1M4 LINE L1 -1487 4659 4592 788 178 141 0 chr11 90378726 90378861 -60404692 + AluJb SINE Alu 141 294 -18 207 0 0 0 chr11 90378887 90378910 -60404643 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1747 132 8 0 chr11 90378914 90379156 -60404397 - AluSx SINE Alu -34 278 35 305 309 149 11 chr11 90379224 90379399 -60404154 - L1M4 LINE L1 -1695 4451 4253 1861 186 0 16 chr11 90379400 90379717 -60403836 - AluJo SINE Alu 0 312 1 334 269 118 0 chr11 90379957 90380076 -60403477 - L2 LINE L2 -658 2656 2524 310 235 257 0 chr11 90380149 90380285 -60403268 - L3 LINE CR1 -3 1574 1404 201 284 179 11 chr11 90380285 90380380 -60403173 - L2 LINE L2 0 3272 3162 225 293 47 47 chr11 90380523 90380673 -60402880 - L1 LINE L1 -1695 4451 4302 832 196 0 7 chr11 90380706 90380849 -60402704 - FRAM SINE Alu 0 40 1 1794 149 0 54 chr11 90380850 90381166 -60402387 + AluJb SINE Alu 3 301 -11 1908 161 3 3 chr11 90381327 90381638 -60401915 - AluJo SINE Alu -1 311 1 1475 190 55 28 chr11 90381650 90381940 -60401613 - AluSx SINE Alu -14 298 1 800 236 19 0 chr11 90382473 90382634 -60400919 - FRAM SINE Alu -12 164 1 863 155 0 0 chr11 90383436 90383582 -60399971 + FLAM_C SINE Alu 1 146 0 198 314 67 38 chr11 90384018 90384123 -60399430 + L2 LINE L2 2614 2721 -593 2125 128 0 3 chr11 90384314 90384611 -60398942 - AluSx SINE Alu -16 296 1 1182 234 138 47 chr11 90384611 90384806 -60398747 + L1MC4a LINE L1 5360 5536 -2272 1975 162 0 7 chr11 90384806 90385109 -60398444 - AluSx SINE Alu -11 301 1 1182 234 138 47 chr11 90385109 90385349 -60398204 + L1MC4a LINE L1 5536 5858 -1950 1935 153 7 3 chr11 90385349 90385644 -60397909 + AluSx SINE Alu 1 296 -16 1182 234 138 47 chr11 90385644 90385757 -60397796 + L1MC4a LINE L1 5858 5959 -1849 283 243 115 47 chr11 90385976 90386124 -60397429 - MIR SINE MIR -81 181 24 324 303 98 33 chr11 90386183 90386305 -60397248 + L2 LINE L2 3133 3262 -10 338 364 15 15 chr11 90387088 90387220 -60396333 + MIR3 SINE MIR 4 135 -73 1648 186 3 44 chr11 90387279 90387468 -60396085 - AluJo SINE Alu -7 305 133 1998 115 17 7 chr11 90387468 90387755 -60395798 + AluSx SINE Alu 1 290 -22 1648 186 3 44 chr11 90387755 90387883 -60395670 - AluJo SINE Alu -179 133 1 192 40 0 0 chr11 90387999 90388024 -60395529 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 24 0 0 0 chr11 90388143 90388167 -60395386 + AT_rich Low_complexity Low_complexity 1 24 0 1754 73 9 0 chr11 90388184 90388402 -60395151 + AluSg/x SINE Alu 84 303 -9 608 331 40 4 chr11 90388658 90388906 -60394647 + MIR SINE MIR 6 262 0 2238 128 0 0 chr11 90389003 90389315 -60394238 + AluSx SINE Alu 1 312 0 237 163 0 0 chr11 90390359 90390408 -60393145 + (CA)n Simple_repeat Simple_repeat 1 49 0 670 172 107 16 chr11 90390499 90390621 -60392932 - FLAM_C SINE Alu 0 133 1 303 351 8 23 chr11 90390776 90390907 -60392646 + MIR SINE MIR 17 145 -63 820 208 0 0 chr11 90391619 90391763 -60391790 - FRAM SINE Alu -12 164 21 744 152 60 43 chr11 90392252 90392436 -60391117 + MER53 DNA DNA 2 188 -1 847 145 0 0 chr11 90392518 90392658 -60390895 - FLAM_C SINE Alu 0 140 1 2200 132 0 0 chr11 90394041 90394351 -60389202 - AluSx SINE Alu -2 310 1 180 221 15 88 chr11 90394654 90394722 -60388831 + MIR SINE MIR 200 262 0 1500 114 27 9 chr11 90394803 90395058 -60388495 - AluSx SINE Alu 0 319 61 857 157 65 20 chr11 90395100 90395253 -60388300 - FRAM SINE Alu -6 170 11 817 182 63 6 chr11 90395419 90395578 -60387975 + FRAM SINE Alu 3 170 -6 239 232 0 18 chr11 90395900 90395956 -60387597 + CT-rich Low_complexity Low_complexity 2 56 0 21 0 0 0 chr11 90395962 90395983 -60387570 + AT_rich Low_complexity Low_complexity 1 21 0 270 320 90 4 chr11 90396229 90396380 -60387173 + MIR SINE MIR 64 235 -27 216 276 156 78 chr11 90396506 90396629 -60386924 - MIR SINE MIR 0 262 150 1944 164 3 0 chr11 90396629 90396927 -60386626 - AluJo SINE Alu -13 299 1 216 276 156 78 chr11 90396927 90397046 -60386507 - MIR SINE MIR -112 150 1 189 176 0 0 chr11 90397055 90397089 -60386464 + L2 LINE L2 3265 3298 -15 2261 102 0 0 chr11 90397243 90397537 -60386016 + AluY SINE Alu 1 294 -17 2264 106 0 0 chr11 90397545 90397846 -60385707 + AluSp SINE Alu 1 301 -12 722 214 8 0 chr11 90398262 90398379 -60385174 - AluJb SINE Alu -193 119 2 2009 150 0 0 chr11 90398385 90398685 -60384868 - AluSx SINE Alu -12 300 1 21 0 0 0 chr11 90399260 90399281 -60384272 + AT_rich Low_complexity Low_complexity 1 21 0 1969 123 30 234 chr11 90399323 90400445 -60383108 + L1M3e LINE L1 1 1947 -5080 2159 110 0 46 chr11 90400445 90400773 -60382780 + AluSq SINE Alu 1 313 0 1969 123 30 234 chr11 90400773 90400944 -60382609 + L1M3e LINE L1 1947 2151 -4876 365 179 39 9 chr11 90400967 90401050 -60382503 + Alu SINE Alu 1 53 -255 1984 158 3 0 chr11 90401089 90401386 -60382167 + AluSx SINE Alu 1 298 -14 1006 99 15 0 chr11 90401388 90401519 -60382034 + AluSp SINE Alu 1 133 -180 189 0 0 0 chr11 90401522 90401543 -60382010 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 557 181 0 75 chr11 90401546 90401706 -60381847 + L1MA9 LINE L1 5105 5252 -894 289 118 0 59 chr11 90401706 90401757 -60381796 - Alu SINE Alu -5 295 248 25 0 0 0 chr11 90401757 90401782 -60381771 + AT_rich Low_complexity Low_complexity 1 25 0 3806 160 35 44 chr11 90401782 90402503 -60381050 + L1MA9 LINE L1 5547 6262 -50 2097 127 3 3 chr11 90402503 90402802 -60380751 - AluSx SINE Alu -12 300 2 3806 160 35 44 chr11 90402802 90402853 -60380700 + L1MA9 LINE L1 6262 6312 0 10467 41 74 9 chr11 90403520 90404838 -60378715 + SVA Other Other 1 1386 0 2271 91 0 28 chr11 90404984 90405302 -60378251 + AluSg1 SINE Alu 1 309 0 2475 63 0 31 chr11 90405496 90405815 -60377738 + AluY SINE Alu 1 309 -2 43 0 0 0 chr11 90406462 90406505 -60377048 + AT_rich Low_complexity Low_complexity 1 43 0 2767 88 45 12 chr11 90406505 90406905 -60376648 - L1MA1 LINE L1 -1 6301 5889 25 0 0 0 chr11 90406913 90406938 -60376615 + AT_rich Low_complexity Low_complexity 1 25 0 200 340 29 19 chr11 90407076 90407179 -60376374 + MER5A DNA MER1_type 54 157 -32 * 206 286 14 29 chr11 90407116 90407186 -60376367 - MER5A DNA MER1_type -85 104 36 297 243 149 36 chr11 90407456 90407566 -60375987 - MIR SINE MIR -64 144 37 1903 106 80 0 chr11 90408624 90408898 -60374655 - AluSg SINE Alu -14 296 1 771 258 95 21 chr11 90408910 90409193 -60374360 + MLT1J LTR MaLR 205 508 -3 520 251 123 11 chr11 90409231 90409410 -60374143 + L2 LINE L2 3115 3313 0 488 369 29 66 chr11 90409542 90409889 -60373664 + L2 LINE L2 2925 3258 -14 245 302 183 8 chr11 90410023 90410149 -60373404 + MIR SINE MIR 42 189 -73 2157 127 7 0 chr11 90410618 90410926 -60372627 + AluSx SINE Alu 1 310 -2 2372 92 3 0 chr11 90411179 90411482 -60372071 - AluSc SINE Alu -5 304 1 305 307 58 36 chr11 90412064 90412201 -60371352 - L2 LINE L2 -32 3281 3142 297 285 127 18 chr11 90412479 90412673 -60370880 + MIR SINE MIR 3 214 -48 292 286 195 0 chr11 90412871 90412948 -60370605 + L2 LINE L2 3161 3252 -20 2115 129 0 0 chr11 90413040 90413353 -60370200 + AluSx SINE Alu 1 313 0 421 244 19 88 chr11 90413876 90414081 -60369472 - MIR SINE MIR 0 262 72 21 57 0 0 chr11 90414236 90414271 -60369282 + AT_rich Low_complexity Low_complexity 1 35 0 2001 168 0 0 chr11 90414309 90414612 -60368941 - AluJb SINE Alu -9 303 1 311 173 107 0 chr11 90414620 90414695 -60368858 + L1ME LINE L1 5557 5639 -482 1033 290 107 18 chr11 90414730 90414937 -60368616 - LTR16C LTR ERVL 0 491 304 2435 80 0 3 chr11 90414937 90415239 -60368314 + AluSq SINE Alu 1 301 -12 1033 290 107 18 chr11 90415239 90415479 -60368074 - LTR16C LTR ERVL -187 304 4 249 271 0 0 chr11 90415484 90415554 -60367999 + L1ME LINE L1 5679 5748 -373 268 343 163 17 chr11 90415643 90415821 -60367732 - L2 LINE L2 -186 3086 2883 28 0 0 0 chr11 90415964 90415992 -60367561 + AT_rich Low_complexity Low_complexity 1 28 0 2248 118 0 13 chr11 90416280 90416585 -60366968 - AluSx SINE Alu -11 301 1 35 24 0 0 chr11 90416688 90416730 -60366823 + AT_rich Low_complexity Low_complexity 1 42 0 2279 78 29 13 chr11 90416851 90417157 -60366396 - AluY SINE Alu 0 311 1 295 234 88 58 chr11 90418016 90418242 -60365311 - L1ME LINE L1 -5159 911 679 23 0 0 0 chr11 90418277 90418300 -60365253 + AT_rich Low_complexity Low_complexity 1 23 0 650 141 0 20 chr11 90418341 90418462 -60365091 + FLAM_A SINE Alu 18 136 0 614 265 24 56 chr11 90419229 90419511 -60364042 + MLT1H LTR MaLR 68 369 -180 2164 120 10 0 chr11 90419627 90419928 -60363625 - AluSq SINE Alu -4 309 6 204 97 0 0 chr11 90420362 90420393 -60363160 + (T)n Simple_repeat Simple_repeat 1 31 0 1713 104 0 9 chr11 90420393 90420623 -60362930 - AluSx SINE Alu -84 228 1 443 341 57 6 chr11 90421068 90421244 -60362309 - MIR SINE MIR -70 192 8 2219 108 0 3 chr11 90421600 90421897 -60361656 + AluSx SINE Alu 1 296 -16 1609 118 12 113 chr11 90422149 90422478 -60361075 - AluSx SINE Alu -12 300 5 261 0 0 0 chr11 90422633 90422662 -60360891 + (CA)n Simple_repeat Simple_repeat 2 30 0 27 29 0 0 chr11 90422684 90422718 -60360835 + AT_rich Low_complexity Low_complexity 1 34 0 210 205 0 0 chr11 90423219 90423258 -60360295 - L2 LINE L2 -6 3307 3269 2018 129 0 11 chr11 90423438 90423767 -60359786 + AluSx SINE Alu 1 326 0 344 278 68 23 chr11 90423889 90424065 -60359488 + L1ME4a LINE L1 5934 6117 -4 1788 153 0 13 chr11 90424083 90424383 -60359170 + AluJb SINE Alu 2 297 -15 1432 134 20 157 chr11 90424561 90424918 -60358635 - AluSp SINE Alu -5 308 1 46 19 0 0 chr11 90425021 90425074 -60358479 + AT_rich Low_complexity Low_complexity 1 53 0 199 273 159 11 chr11 90425312 90425400 -60358153 + L2 LINE L2 3163 3263 -9 1112 107 38 0 chr11 90426188 90426367 -60357186 - AluSg/x SINE Alu 0 305 121 2409 48 7 10 chr11 90426461 90426753 -60356800 - AluSc SINE Alu -18 291 1 273 75 0 0 chr11 90431001 90431041 -60352512 + (T)n Simple_repeat Simple_repeat 1 40 0 2328 92 16 3 chr11 90433443 90433749 -60349804 - AluSp SINE Alu -2 311 2 27 29 0 0 chr11 90434281 90434315 -60349238 + AT_rich Low_complexity Low_complexity 1 34 0 1505 182 74 0 chr11 90435280 90435549 -60348004 + AluJo SINE Alu 1 289 -23 551 339 23 0 chr11 90437502 90437676 -60345877 - MIR SINE MIR -72 190 13 29 0 0 0 chr11 90438044 90438073 -60345480 + AT_rich Low_complexity Low_complexity 1 29 0 589 295 56 36 chr11 90438739 90438990 -60344563 - MIR SINE MIR -6 256 1 245 344 54 11 chr11 90442038 90442131 -60341422 + MIR SINE MIR 51 147 -61 234 241 52 0 chr11 90442122 90442180 -60341373 - MIR SINE MIR -73 135 75 * 1790 146 25 0 chr11 90443099 90443394 -60340159 - AluSx SINE Alu 0 303 2 22 35 0 0 chr11 90443674 90443703 -60339850 + AT_rich Low_complexity Low_complexity 1 29 0 273 330 42 25 chr11 90443727 90443845 -60339708 + MIR SINE MIR 20 139 -123 2313 91 0 19 chr11 90443854 90444162 -60339391 + AluSc SINE Alu 1 302 -7 321 118 0 0 chr11 90444374 90444425 -60339128 + (T)n Simple_repeat Simple_repeat 1 51 0 22 0 0 0 chr11 90444446 90444468 -60339085 + GC_rich Low_complexity Low_complexity 1 22 0 2053 130 10 7 chr11 90444658 90444959 -60338594 - AluSx SINE Alu -10 302 1 222 296 0 0 chr11 90445212 90445266 -60338287 - L2 LINE L2 -5 3267 3214 949 121 15 8 chr11 90445317 90445449 -60338104 - FLAM_C SINE Alu 0 133 1 682 250 88 5 chr11 90445518 90445722 -60337831 - MIR SINE MIR -34 228 8 1980 125 14 14 chr11 90446068 90446363 -60337190 - AluSx SINE Alu -17 295 1 2196 109 3 13 chr11 90446400 90446711 -60336842 + AluY SINE Alu 1 308 -3 4964 52 0 3 chr11 90447200 90447781 -60335772 + L1PA6 LINE L1 5576 6154 0 1788 126 83 0 chr11 90448996 90449250 -60334303 - AluSx SINE Alu -37 275 1 2391 51 0 57 chr11 90449444 90449758 -60333795 + AluY SINE Alu 1 296 -15 320 243 207 76 chr11 90450040 90450181 -60333372 - HAL1 LINE L1 -2 2505 2384 2101 125 0 0 chr11 90450181 90450470 -60333083 - AluSx SINE Alu -13 299 11 320 243 207 76 chr11 90450470 90450552 -60333001 - HAL1 LINE L1 -123 2384 2314 2004 108 0 52 chr11 90450552 90450859 -60332694 + AluSx SINE Alu 1 291 -21 320 243 207 76 chr11 90450859 90451009 -60332544 - HAL1 LINE L1 -193 2314 2185 1945 179 0 0 chr11 90451009 90451317 -60332236 - AluSg SINE Alu -2 308 1 320 243 207 76 chr11 90451317 90451400 -60332153 - HAL1 LINE L1 -322 2185 1984 56 48 0 0 chr11 90452160 90452244 -60331309 + AT_rich Low_complexity Low_complexity 1 84 0 21 0 0 0 chr11 90452448 90452469 -60331084 + AT_rich Low_complexity Low_complexity 1 21 0 226 309 65 3 chr11 90453561 90453701 -60329852 - MIR3 SINE MIR -13 195 6 2270 112 3 0 chr11 90454418 90454721 -60328832 - AluSq SINE Alu -9 304 1 2235 112 3 3 chr11 90454801 90455105 -60328448 + AluSq SINE Alu 1 304 -9 25 0 0 0 chr11 90456105 90456130 -60327423 + AT_rich Low_complexity Low_complexity 1 25 0 331 192 167 50 chr11 90456893 90457013 -60326540 - MIR SINE MIR -14 248 115 277 324 106 35 chr11 90457122 90457264 -60326289 - L2 LINE L2 -194 3078 2927 840 145 8 0 chr11 90457343 90457467 -60326086 - FLAM_C SINE Alu -18 125 1 210 269 67 29 chr11 90457482 90457586 -60325967 - L2 LINE L2 -505 2809 2702 2032 83 6 87 chr11 90457963 90458275 -60325278 - AluSx SINE Alu -11 301 15 838 173 0 0 chr11 90458604 90458737 -60324816 + AluJb SINE Alu 1 133 -179 708 203 8 0 chr11 90458971 90459089 -60324464 - FLAM_A SINE Alu -14 119 1 2208 63 52 3 chr11 90460269 90460556 -60322997 + AluY SINE Alu 1 301 -10 501 100 14 0 chr11 90460709 90460779 -60322774 - Alu SINE Alu -18 291 221 2311 90 0 7 chr11 90460922 90461222 -60322331 - AluSc SINE Alu -11 298 1 823 118 0 0 chr11 90461224 90461334 -60322219 - AluJb SINE Alu -13 299 190 1918 138 26 42 chr11 90461471 90461782 -60321771 - AluSx SINE Alu -4 308 3 279 277 233 30 chr11 90461993 90462195 -60321358 + MIR SINE MIR 13 255 -7 2256 106 0 0 chr11 90462226 90462518 -60321035 - AluSq SINE Alu -15 298 7 231 254 16 16 chr11 90462522 90462585 -60320968 + MIR3 SINE MIR 120 182 -26 250 327 93 60 chr11 90462653 90462803 -60320750 - L2 LINE L2 -16 3256 3102 568 226 83 69 chr11 90463103 90463418 -60320135 + LTR15 LTR ERV1 177 596 0 267 275 52 150 chr11 90463418 90463611 -60319942 + MIR SINE MIR 77 250 -12 182 256 107 50 chr11 90465850 90465971 -60317582 + L2 LINE L2 1854 1981 -1333 213 304 264 8 chr11 90466161 90466286 -60317267 - L2 LINE L2 0 3272 3116 324 339 118 22 chr11 90466401 90466767 -60316786 + L2 LINE L2 2253 2653 -661 2224 88 10 3 chr11 90466772 90467068 -60316485 - AluY SINE Alu -13 298 1 333 62 0 0 chr11 90467306 90467354 -60316199 + (TG)n Simple_repeat Simple_repeat 1 48 0 280 291 28 122 chr11 90467371 90467625 -60315928 + L2 LINE L2 2943 3172 -100 190 271 21 0 chr11 90468263 90468311 -60315242 + L2 LINE L2 3216 3264 -8 23 0 0 0 chr11 90468649 90468672 -60314881 + AT_rich Low_complexity Low_complexity 1 23 0 1502 250 102 18 chr11 90468784 90469236 -60314317 - L1MCb LINE L1 -5555 490 1 646 262 123 45 chr11 90469702 90470034 -60313519 - MLT1G1 LTR MaLR 0 595 238 319 268 66 33 chr11 90470281 90470524 -60313029 - L1ME3A LINE L1 -239 5931 5681 235 316 53 18 chr11 90471279 90471393 -60312160 + L2 LINE L2 2259 2376 -938 22 0 0 0 chr11 90471604 90471626 -60311927 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr11 90471893 90471916 -60311637 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 7230 59 17 4 chr11 90471918 90473506 -60310047 - L1PA8 LINE L1 -17 6155 4557 215 410 42 0 chr11 90473691 90473786 -60309767 + L2 LINE L2 3143 3241 -31 263 266 109 0 chr11 90473844 90473908 -60309645 + L2 LINE L2 3193 3263 -9 1849 143 13 20 chr11 90473908 90474208 -60309345 - AluSx SINE Alu -10 302 5 2291 126 0 0 chr11 90474304 90474613 -60308940 - AluSg SINE Alu -1 309 1 389 151 68 0 chr11 90474775 90474848 -60308705 - L1M4 LINE L1 -5160 1382 1305 2009 172 0 0 chr11 90474856 90475164 -60308389 - AluSx SINE Alu -4 308 1 1948 205 70 33 chr11 90475164 90475276 -60308277 + L1ME LINE L1 4846 4952 -1214 1647 151 27 23 chr11 90475276 90475575 -60307978 + L1PA16 LINE L1 5867 6166 0 1948 205 70 33 chr11 90475575 90476139 -60307414 + L1ME LINE L1 4952 5712 -454 214 207 121 0 chr11 90476140 90476198 -60307355 + L2 LINE L2 3249 3313 0 455 278 32 13 chr11 90476593 90476787 -60306766 + Charlie8 DNA MER1_type 3 275 -2142 2397 130 22 14 chr11 90477358 90477720 -60305833 + MLT1A1 LTR MaLR 1 365 0 2698 100 11 3 chr11 90477877 90478248 -60305305 - THE1C LTR MaLR -1 374 1 341 267 344 10 chr11 90478513 90478708 -60304845 - MIR SINE MIR 0 262 3 1776 150 19 45 chr11 90478940 90479253 -60304300 - AluJo SINE Alu -7 305 1 246 32 0 0 chr11 90479276 90479307 -60304246 + (TG)n Simple_repeat Simple_repeat 1 31 0 256 340 94 0 chr11 90479558 90479749 -60303804 - L2 LINE L2 -835 2479 2271 596 141 0 0 chr11 90479782 90479867 -60303686 - AluJ/FLAM SINE Alu -227 85 1 22 0 0 0 chr11 90480002 90480024 -60303529 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 90481869 90481890 -60301663 + AT_rich Low_complexity Low_complexity 1 21 0 201 300 100 0 chr11 90481919 90481979 -60301574 - MIR3 SINE MIR -44 164 99 1493 148 36 73 chr11 90482436 90482739 -60300814 + AluJo SINE Alu 1 292 -20 1898 140 10 10 chr11 90482994 90483302 -60300251 - AluSx SINE Alu -4 308 1 354 358 70 5 chr11 90483618 90483805 -60299748 - L1M4c LINE L1 -4543 1841 1643 21 36 0 0 chr11 90483825 90483853 -60299700 + AT_rich Low_complexity Low_complexity 1 28 0 812 231 53 61 chr11 90484458 90484818 -60298735 - L1ME LINE L1 -665 5499 5149 2281 110 0 0 chr11 90484818 90485110 -60298443 - AluSg SINE Alu -18 292 1 812 231 53 61 chr11 90485110 90485315 -60298238 - L1ME LINE L1 -1015 5149 4944 188 254 48 48 chr11 90485436 90485499 -60298054 + MIR SINE MIR 6 68 -194 3458 157 31 30 chr11 90485509 90486176 -60297377 - L1MA4 LINE L1 -5 6295 5628 2402 203 60 59 chr11 90486182 90486720 -60296833 - L1 LINE L1 -3791 2537 2001 2081 127 3 0 chr11 90486720 90487011 -60296542 - AluSx SINE Alu -15 297 6 2402 203 60 59 chr11 90487011 90487248 -60296305 - L1 LINE L1 -4327 2001 1753 2538 30 7 3 chr11 90487248 90487546 -60296007 - AluY SINE Alu -12 299 1 2402 203 60 59 chr11 90487546 90487633 -60295920 - L1 LINE L1 -4575 1753 1668 1145 70 0 0 chr11 90487638 90487780 -60295773 - LTR30 LTR ERV1 -578 144 3 2944 94 0 8 chr11 90487782 90488177 -60295376 - HERV30 LTR ERV1 0 8257 7866 24786 91 4 2 chr11 90488200 90491381 -60292172 - HERV30 LTR ERV1 -5070 3187 1 945 129 103 0 chr11 90491381 90491536 -60292017 - LTR30 LTR ERV1 0 722 552 7627 170 27 8 chr11 90491542 90493186 -60290367 - L1 LINE L1 -4065 1263 6 1285 307 61 4 chr11 90493201 90493673 -60289880 - L2 LINE L2 -1 3312 2814 568 244 84 0 chr11 90493689 90493820 -60289733 - FLAM_A SINE Alu 0 142 1 1562 214 52 61 chr11 90493823 90493884 -60289669 - L2 LINE L2 -566 2748 2688 2061 128 3 3 chr11 90493884 90494181 -60289372 + AluSx SINE Alu 1 297 -15 1562 214 52 61 chr11 90494181 90494614 -60288939 - L2 LINE L2 -626 2688 2258 21 36 0 0 chr11 90495089 90495117 -60288436 + AT_rich Low_complexity Low_complexity 1 28 0 27 49 0 0 chr11 90495202 90495243 -60288310 + AT_rich Low_complexity Low_complexity 1 41 0 959 158 24 12 chr11 90495539 90495704 -60287849 + AluJo SINE Alu 120 286 -26 40 0 0 0 chr11 90495719 90495759 -60287794 + AT_rich Low_complexity Low_complexity 1 40 0 203 86 57 0 chr11 90496001 90496036 -60287517 + (ATG)n Simple_repeat Simple_repeat 3 39 0 24 67 0 0 chr11 90496090 90496135 -60287418 + AT_rich Low_complexity Low_complexity 1 45 0 1773 191 7 0 chr11 90496201 90496499 -60287054 + AluJb SINE Alu 1 300 -12 1149 144 0 17 chr11 90496549 90496729 -60286824 + AluSp SINE Alu 137 313 0 204 97 0 0 chr11 90496907 90496938 -60286615 + (A)n Simple_repeat Simple_repeat 1 31 0 795 149 0 71 chr11 90497039 90497180 -60286373 - FLAM_C SINE Alu -11 132 2 271 257 100 14 chr11 90497235 90497305 -60286248 + MER2 DNA MER2_type 270 345 0 381 131 0 0 chr11 90497314 90497375 -60286178 + (CA)n Simple_repeat Simple_repeat 2 62 0 585 182 69 44 chr11 90497612 90497771 -60285782 + L1M4 LINE L1 4651 4813 -1333 759 217 92 0 chr11 90497771 90497949 -60285604 + AluJo SINE Alu 117 308 0 1155 132 35 25 chr11 90497949 90498146 -60285407 - MER2 DNA MER2_type -145 200 2 1872 98 0 0 chr11 90498301 90498536 -60285017 - AluSx SINE Alu -77 235 1 333 0 0 0 chr11 90499355 90499392 -60284161 + (T)n Simple_repeat Simple_repeat 1 37 0 27 0 0 0 chr11 90499409 90499436 -60284117 + GC_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr11 90499455 90499478 -60284075 + GC_rich Low_complexity Low_complexity 1 23 0 1713 131 83 7 chr11 90499611 90499901 -60283652 - AluJb SINE Alu 0 312 1 195 69 0 0 chr11 90500307 90500336 -60283217 + (T)n Simple_repeat Simple_repeat 1 29 0 2413 162 0 27 chr11 90500362 90500763 -60282790 - MLT1B LTR MaLR 0 390 1 12403 140 25 29 chr11 90501227 90501450 -60282103 - L1MA2 LINE L1 0 6304 6082 1816 157 4 4 chr11 90501450 90501724 -60281829 - AluJb SINE Alu -38 274 1 12403 140 25 29 chr11 90501724 90501962 -60281591 - L1MA2 LINE L1 -222 6082 5845 2243 98 0 0 chr11 90501962 90502258 -60281295 - AluY SINE Alu -15 296 1 12403 140 25 29 chr11 90502258 90503271 -60280282 - L1MA2 LINE L1 -459 5845 4830 295 167 0 0 chr11 90503271 90503313 -60280240 + AluSg/x SINE Alu 133 174 -128 12403 140 25 29 chr11 90503313 90505043 -60278510 - L1MA2 LINE L1 -1474 4830 3064 2062 131 0 0 chr11 90505043 90505355 -60278198 - AluSx SINE Alu 0 312 1 12403 140 25 29 chr11 90505355 90505551 -60278002 - L1MA2 LINE L1 -3240 3064 2869 348 263 6 109 chr11 90506728 90506884 -60276669 - MIR SINE MIR -66 196 57 191 222 154 77 chr11 90506899 90507016 -60276537 - L2 LINE L2 0 3272 3147 301 296 15 74 chr11 90507419 90507554 -60275999 + MIR SINE MIR 16 142 -66 264 257 99 86 chr11 90508062 90508214 -60275339 + MER20B DNA MER1_type 1 154 -629 406 326 89 0 chr11 90508443 90508578 -60274975 - L2 LINE L2 -1 3271 3125 1463 219 60 26 chr11 90509094 90509509 -60274044 - L1ME1 LINE L1 -5 6161 5733 * 2417 185 58 31 chr11 90509507 90509786 -60273767 - L1MC4 LINE L1 -743 5403 5133 1839 129 17 24 chr11 90509786 90509921 -60273632 + AluSx SINE Alu 1 135 -177 2326 94 3 10 chr11 90509921 90510229 -60273324 + AluSp SINE Alu 1 306 -7 1839 129 17 24 chr11 90510229 90510388 -60273165 + AluSx SINE Alu 135 293 -19 2417 185 58 31 chr11 90510388 90511130 -60272423 - L1MC4 LINE L1 -1013 5133 4771 662 251 222 62 chr11 90512640 90513231 -60270322 - L2 LINE L2 -11 3302 2651 863 226 25 17 chr11 90513698 90513937 -60269616 - L2 LINE L2 -656 2658 2418 2132 112 7 0 chr11 90513940 90514235 -60269318 - AluSg SINE Alu -13 297 1 2544 109 49 7 chr11 90514235 90514665 -60268888 - L1P4 LINE L1 -381 5784 5337 208 282 128 13 chr11 90514667 90514745 -60268808 + MIR SINE MIR 176 262 0 * 339 290 110 7 chr11 90514736 90514891 -60268662 - L3 LINE CR1 -170 1407 1237 2287 57 7 11 chr11 90515018 90515336 -60268217 - AluY SINE Alu 0 317 1 288 0 0 0 chr11 90515340 90515372 -60268181 + (T)n Simple_repeat Simple_repeat 1 32 0 2261 119 3 0 chr11 90515605 90515916 -60267637 - AluSx SINE Alu 0 312 1 244 260 18 20 chr11 90515938 90516028 -60267525 - MER5A DNA MER1_type -82 96 5 862 191 5 62 chr11 90516109 90516303 -60267250 - MER20 DNA MER1_type -4 215 33 2317 80 7 0 chr11 90516547 90516836 -60266717 - AluSx SINE Alu -19 293 3 855 83 53 8 chr11 90517424 90517557 -60265996 - L1MB2 LINE L1 -6 6165 6027 1380 181 62 44 chr11 90517753 90518091 -60265462 - MER2 DNA MER2_type 0 344 1 989 113 0 0 chr11 90518871 90519004 -60264549 - AluSq/x SINE Alu -179 133 1 1362 274 23 34 chr11 90519031 90519469 -60264084 + L2 LINE L2 2879 3311 -2 424 322 117 0 chr11 90519764 90519932 -60263621 + MIR SINE MIR 5 197 -65 360 0 0 0 chr11 90519932 90519972 -60263581 + (CA)n Simple_repeat Simple_repeat 2 41 0 424 322 117 0 chr11 90519972 90519983 -60263570 + MIR SINE MIR 197 205 -57 24 0 0 0 chr11 90520342 90520366 -60263187 + AT_rich Low_complexity Low_complexity 1 24 0 1029 168 50 10 chr11 90520845 90521012 -60262541 - AluJo SINE Alu -16 296 118 219 36 0 0 chr11 90521012 90521040 -60262513 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1029 168 50 10 chr11 90521040 90521074 -60262479 - AluJo SINE Alu -194 118 87 399 246 47 18 chr11 90521459 90521603 -60261950 + MIR SINE MIR 115 262 0 428 270 49 84 chr11 90521946 90522172 -60261381 - MIR SINE MIR -11 251 34 203 336 161 38 chr11 90522201 90522624 -60260929 + L2 LINE L2 2227 2701 -613 382 283 72 22 chr11 90523105 90523243 -60260310 - MIR SINE MIR -111 151 7 25 51 0 0 chr11 90523333 90523372 -60260181 + AT_rich Low_complexity Low_complexity 1 39 0 1207 191 91 35 chr11 90523522 90523971 -60259582 + L1ME3A LINE L1 5125 5577 -593 1255 257 130 11 chr11 90524001 90524456 -60259097 + L1ME3A LINE L1 5660 6168 -2 25 83 0 0 chr11 90524463 90524523 -60259030 + AT_rich Low_complexity Low_complexity 1 60 0 1586 163 21 17 chr11 90525622 90525910 -60257643 - AluJb SINE Alu -23 289 1 2065 126 36 0 chr11 90526054 90526355 -60257198 - AluSx SINE Alu 0 312 1 22 0 0 0 chr11 90527885 90527907 -60255646 + AT_rich Low_complexity Low_complexity 1 22 0 441 199 306 51 chr11 90528473 90528669 -60254884 + MIR SINE MIR 17 262 0 327 226 373 17 chr11 90529099 90529276 -60254277 - MIR SINE MIR -11 251 12 1134 244 160 5 chr11 90529469 90529895 -60253658 + MLT1J LTR MaLR 1 492 -19 397 311 128 0 chr11 90530098 90530262 -60253291 + MIR SINE MIR 19 203 -59 28 29 0 0 chr11 90530363 90530398 -60253155 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr11 90530681 90530708 -60252845 + AT_rich Low_complexity Low_complexity 1 27 0 881 207 12 18 chr11 90531294 90531463 -60252090 - FAM SINE Alu -7 168 1 315 311 121 8 chr11 90531845 90531977 -60251576 + L2 LINE L2 3167 3313 0 2014 74 86 0 chr11 90532744 90533001 -60250552 - AluSx SINE Alu -33 279 1 25 65 0 0 chr11 90534017 90534063 -60249490 + AT_rich Low_complexity Low_complexity 1 46 0 344 282 243 44 chr11 90534547 90534728 -60248825 - MIR SINE MIR -26 236 20 259 239 0 56 chr11 90535100 90535171 -60248382 + MIR SINE MIR 196 262 0 246 192 103 39 chr11 90535589 90535667 -60247886 + L1ME LINE L1 5542 5624 -497 346 291 34 38 chr11 90535735 90535898 -60247655 + L1ME LINE L1 5660 5819 -345 1810 31 31 4 chr11 90536104 90536331 -60247222 - L1P LINE L1 -4273 1873 1641 * 3506 17 2 0 chr11 90536330 90536733 -60246820 + L1PA3 LINE L1 5730 6133 -22 25 31 0 0 chr11 90537285 90537317 -60246236 + AT_rich Low_complexity Low_complexity 1 32 0 37396 77 20 15 chr11 90537773 90543890 -60239663 + L1PA6 LINE L1 11 6149 -5 640 241 108 40 chr11 90544510 90544756 -60238797 + MIR SINE MIR 4 255 -7 635 114 175 9 chr11 90544892 90545006 -60238547 - FLAM_C SINE Alu 0 133 1 21 36 0 0 chr11 90546239 90546267 -60237286 + AT_rich Low_complexity Low_complexity 1 28 0 1283 136 81 14 chr11 90547008 90547229 -60236324 + MER46A DNA MER2_type 1 236 0 956 202 82 39 chr11 90547360 90547593 -60235960 + MIR SINE MIR 20 262 0 1971 141 0 7 chr11 90547996 90548280 -60235273 - AluSx SINE Alu -25 287 6 1949 125 13 42 chr11 90549119 90549431 -60234122 - AluSx SINE Alu -9 303 1 237 328 137 0 chr11 90549744 90549875 -60233678 + MIR SINE MIR 95 243 -19 2440 74 7 0 chr11 90550637 90550946 -60232607 + AluY SINE Alu 1 311 0 286 279 57 70 chr11 90550980 90551209 -60232344 - L1P5 LINE L1 -608 5513 5291 461 212 75 14 chr11 90551535 90551681 -60231872 - L1ME4a LINE L1 -199 5922 5768 197 303 132 0 chr11 90551989 90552065 -60231488 + MIR SINE MIR 57 142 -66 459 238 130 22 chr11 90552294 90552525 -60231028 + L2 LINE L2 3058 3313 0 278 276 122 10 chr11 90552720 90552818 -60230735 - MIR3 SINE MIR -94 114 6 244 379 0 29 chr11 90552952 90553055 -60230498 - L2 LINE L2 -39 3233 3134 24 0 0 0 chr11 90553428 90553452 -60230101 + AT_rich Low_complexity Low_complexity 1 24 0 215 156 67 22 chr11 90553483 90553528 -60230025 - MIR SINE MIR -115 147 101 1514 137 0 0 chr11 90553530 90553749 -60229804 - Tigger5 DNA MER2_type -2 2321 2103 1307 189 130 4 chr11 90553756 90554026 -60229527 - Tigger5 DNA MER2_type -2019 304 1 537 279 103 94 chr11 90554185 90554502 -60229051 + L2 LINE L2 2837 3161 -111 775 186 95 81 chr11 90554502 90554723 -60228830 + MER58A DNA MER1_type 1 224 0 537 279 103 94 chr11 90554723 90554832 -60228721 + L2 LINE L2 3161 3267 -5 184 283 0 33 chr11 90554819 90554879 -60228674 - L2 LINE L2 -31 3241 3184 * 1834 168 13 0 chr11 90555315 90555613 -60227940 + AluJb SINE Alu 1 302 -10 2360 94 3 0 chr11 90558602 90558900 -60224653 + AluSx SINE Alu 1 299 -13 2262 161 41 21 chr11 90558957 90559393 -60224160 - L1PA16 LINE L1 -73 6093 5649 26 50 0 0 chr11 90559393 90559433 -60224120 + GC_rich Low_complexity Low_complexity 1 40 0 777 315 50 3 chr11 90559534 90559874 -60223679 + L2 LINE L2 2814 3169 -144 1147 144 6 0 chr11 90559883 90560056 -60223497 - AluJo SINE Alu -138 174 1 6085 172 26 7 chr11 90560057 90561668 -60221885 - L1P4 LINE L1 -481 5685 4047 523 265 82 32 chr11 90561675 90561731 -60221822 + L1ME4a LINE L1 5570 5622 -499 2315 110 0 13 chr11 90561731 90562039 -60221514 - AluSx SINE Alu -8 304 1 523 265 82 32 chr11 90562039 90562261 -60221292 + L1ME4a LINE L1 5622 5862 -259 21 0 0 0 chr11 90562809 90562830 -60220723 + AT_rich Low_complexity Low_complexity 1 21 0 275 253 36 0 chr11 90562851 90562934 -60220619 + MIR SINE MIR 163 248 -14 1887 209 60 18 chr11 90562959 90563394 -60220159 + LTR40b LTR ERVL 2 454 -8 348 284 151 89 chr11 90563853 90564191 -60219362 + L2 LINE L2 2914 3272 0 251 332 128 39 chr11 90565529 90565918 -60217635 - L2 LINE L2 -22 3250 2827 1793 159 19 7 chr11 90566013 90566321 -60217232 + AluJo SINE Alu 1 312 0 426 314 36 0 chr11 90566741 90566878 -60216675 - MIR SINE MIR -57 205 64 543 284 45 17 chr11 90567025 90567201 -60216352 + MER117 DNA MER1_type 1 181 -16 306 247 327 12 chr11 90567345 90567507 -60216046 - MIR SINE MIR 0 262 50 2763 202 16 5 chr11 90567917 90568471 -60215082 - L1MB5 LINE L1 -16 6158 5599 427 296 91 26 chr11 90568683 90568888 -60214665 - MIR SINE MIR -29 233 16 189 175 88 18 chr11 90571246 90571303 -60212250 - MIR SINE MIR -19 243 183 1074 224 75 0 chr11 90572040 90572281 -60211272 + MIR SINE MIR 4 262 0 268 278 75 45 chr11 90573934 90574067 -60209486 + L2 LINE L2 3155 3291 -22 340 253 72 48 chr11 90574169 90574335 -60209218 - LTR67 LTR ERVL -4 553 384 253 282 145 16 chr11 90574691 90574815 -60208738 - L2 LINE L2 0 3272 3133 277 276 20 31 chr11 90574989 90575087 -60208466 - L3 LINE CR1 -7 1570 1474 705 225 155 54 chr11 90575944 90576379 -60207174 - LTR33 LTR ERVL 0 521 3 2496 158 88 6 chr11 90576930 90577397 -60206156 + MLT1D LTR MaLR 1 505 0 585 256 106 11 chr11 90577398 90577434 -60206119 - MIR SINE MIR -57 205 174 1762 102 109 8 chr11 90577434 90577700 -60205853 - AluSx SINE Alu -19 293 1 585 256 106 11 chr11 90577700 90577843 -60205710 - MIR SINE MIR -88 174 9 463 280 83 6 chr11 90578037 90578205 -60205348 + MIR SINE MIR 57 237 -25 848 295 34 23 chr11 90579233 90579586 -60203967 - L1MC4a LINE L1 -1908 5900 5544 1381 158 17 0 chr11 90579789 90580023 -60203530 - Tigger1 DNA MER2_type -1342 1076 839 14926 112 62 19 chr11 90580053 90580378 -60203175 - Tigger1 DNA MER2_type 0 2418 2108 1444 194 59 11 chr11 90580378 90580798 -60202755 + AluJo SINE Alu 1 433 0 14926 112 62 19 chr11 90580798 90581102 -60202451 - Tigger1 DNA MER2_type -310 2108 1819 1865 151 43 0 chr11 90581102 90581380 -60202173 - AluJb SINE Alu -22 290 1 14926 112 62 19 chr11 90581380 90581761 -60201792 - Tigger1 DNA MER2_type -599 1819 1456 2054 138 0 14 chr11 90581761 90582052 -60201501 - AluSx SINE Alu -25 287 1 14926 112 62 19 chr11 90582052 90583355 -60200198 - Tigger1 DNA MER2_type -962 1456 1 303 291 0 13 chr11 90584650 90584729 -60198824 + MIR SINE MIR 46 123 -85 192 161 0 0 chr11 90585241 90585272 -60198281 + MIR SINE MIR 73 103 -159 370 286 88 10 chr11 90586001 90586161 -60197392 - MIR SINE MIR -27 235 56 2305 105 7 0 chr11 90586161 90586456 -60197097 + AluSg SINE Alu 1 297 -13 370 286 88 10 chr11 90586456 90586487 -60197066 - MIR SINE MIR -206 56 29 230 254 56 0 chr11 90586704 90586775 -60196778 - MIR SINE MIR -86 176 102 448 209 0 0 chr11 90586816 90586907 -60196646 - MER5A DNA MER1_type -92 97 7 2529 78 0 0 chr11 90586960 90587269 -60196284 + AluY SINE Alu 1 309 -2 1939 148 0 16 chr11 90587297 90587628 -60195925 - AluSx SINE Alu 0 312 1 3526 13 29 0 chr11 90587632 90588013 -60195540 - SVA Other Other -3 1383 992 222 275 52 150 chr11 90590711 90590904 -60192649 - MIR SINE MIR -12 250 77 552 229 83 69 chr11 90590904 90591219 -60192334 - LTR15 LTR ERV1 0 596 177 229 295 0 39 chr11 90591529 90591607 -60191946 + L2 LINE L2 3112 3186 -86 213 254 16 16 chr11 90591737 90591800 -60191753 - MIR3 SINE MIR -26 182 120 2279 106 0 0 chr11 90591804 90592096 -60191457 + AluSq SINE Alu 7 298 -15 231 264 176 40 chr11 90592204 90592329 -60191224 - MIR SINE MIR -108 154 13 1964 133 26 42 chr11 90592540 90592849 -60190704 + AluSx SINE Alu 3 306 -6 242 266 109 0 chr11 90592849 90592913 -60190640 - L2 LINE L2 -9 3263 3193 185 410 42 0 chr11 90592971 90593066 -60190487 - L2 LINE L2 -31 3241 3143 6901 59 19 10 chr11 90593251 90594864 -60188689 + L1PA8 LINE L1 4557 6180 0 22 0 0 0 chr11 90595131 90595153 -60188400 + AT_rich Low_complexity Low_complexity 1 22 0 205 316 53 18 chr11 90595364 90595478 -60188075 - L2 LINE L2 -938 2376 2259 287 292 62 29 chr11 90596236 90596479 -60187074 + L1ME3A LINE L1 5681 5931 -239 634 265 123 45 chr11 90596726 90597058 -60186495 + MLT1G1 LTR MaLR 238 595 0 1497 250 102 18 chr11 90597524 90597976 -60185577 + L1MCb LINE L1 1 490 -5555 23 0 0 0 chr11 90598088 90598111 -60185442 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr11 90601551 90601580 -60181973 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 247 184 13 53 chr11 90601634 90601710 -60181843 + (CGGGG)n Simple_repeat Simple_repeat 2 74 0 26 64 0 0 chr11 90605720 90605767 -60177786 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr11 90608085 90608108 -60175445 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 90617601 90617622 -60165931 + AT_rich Low_complexity Low_complexity 1 21 0 329 214 134 0 chr11 90618925 90619037 -60164516 - MIR SINE MIR -66 196 70 222 318 155 0 chr11 90619972 90620101 -60163452 - L2 LINE L2 -2 3311 3163 1186 150 50 5 chr11 90620186 90620406 -60163147 - L1MA4A LINE L1 -8 6997 6768 6474 110 29 7 chr11 90620425 90621423 -60162130 - L1MA3 LINE L1 0 6305 5286 14492 170 28 32 chr11 90621437 90625395 -60158158 - L1MA4A LINE L1 -244 6761 2831 5644 204 128 20 chr11 90625395 90627136 -60156417 - L1MA4A LINE L1 -4705 2144 1 402 329 156 12 chr11 90627490 90627907 -60155646 - L2 LINE L2 -443 2871 2395 2682 151 7 2 chr11 90627914 90628326 -60155227 + MLT2D LTR ERVL 1 414 0 495 231 1 47 chr11 90628366 90628461 -60155092 + L1MA5 LINE L1 5836 5926 -379 2092 135 35 24 chr11 90628461 90628832 -60154721 + THE1C LTR MaLR 1 375 0 495 231 1 47 chr11 90628832 90628855 -60154698 + L1MA5 LINE L1 5926 5949 -356 198 0 0 0 chr11 90629053 90629075 -60154478 + (A)n Simple_repeat Simple_repeat 1 22 0 356 229 9 9 chr11 90629086 90629195 -60154358 + L1MA5 LINE L1 5946 6054 -246 1587 113 47 8 chr11 90630181 90630438 -60153115 + L1MA5 LINE L1 6034 6300 0 250 245 56 0 chr11 90630966 90631059 -60152494 + MIR SINE MIR 20 126 -82 204 279 25 13 chr11 90631711 90631790 -60151763 + L2 LINE L2 3234 3313 0 382 274 33 13 chr11 90632689 90632842 -60150711 - L1ME3A LINE L1 -234 5936 5781 2257 112 0 0 chr11 90632855 90633150 -60150403 - AluSc SINE Alu -14 295 1 1025 246 56 18 chr11 90633153 90633438 -60150115 - MER46C DNA MER2_type -3 335 40 262 239 205 8 chr11 90633546 90633663 -60149890 + L2 LINE L2 3133 3272 0 1575 226 41 11 chr11 90634503 90634866 -60148687 + MLT2D LTR ERVL 1 374 -40 223 298 0 0 chr11 90634866 90634923 -60148630 + (TA)n Simple_repeat Simple_repeat 1 57 0 228 100 125 0 chr11 90634923 90634963 -60148590 + MLT2D LTR ERVL 369 413 -1 385 274 48 14 chr11 90636528 90636674 -60146879 + MIR SINE MIR 64 214 -48 2313 146 46 90 chr11 90637869 90638769 -60144784 + L1MA3 LINE L1 5215 6025 -280 * 3157 155 30 15 chr11 90638390 90638920 -60144633 + L1PA16 LINE L1 5626 6163 -3 631 192 72 8 chr11 90638923 90639048 -60144505 + MER39 LTR ERV1 1 133 -574 1140 201 146 36 chr11 90639054 90639383 -60144170 + MER39 LTR ERV1 340 704 -3 1436 71 9 28 chr11 90640325 90640536 -60143017 - L1PA14 LINE L1 -1 6160 5954 210 71 0 0 chr11 90641386 90641414 -60142139 + (T)n Simple_repeat Simple_repeat 1 28 0 477 122 11 56 chr11 90641526 90641616 -60141937 + HERVH LTR ERV1 7628 7713 0 2706 76 108 7 chr11 90641616 90642023 -60141530 + LTR7 LTR ERV1 1 448 -2 2564 78 0 0 chr11 90642643 90642952 -60140601 + AluY SINE Alu 1 309 -2 4307 97 8 0 chr11 90643095 90643684 -60139869 + HERVH LTR ERV1 1811 2404 -5309 1412 130 19 0 chr11 90643710 90643926 -60139627 + HERVH LTR ERV1 5600 5819 -1894 1109 109 86 0 chr11 90643924 90644098 -60139455 + HERVH LTR ERV1 7322 7510 -203 * 5256 110 17 4 chr11 90644198 90644977 -60138576 - HERVH LTR ERV1 -6132 1581 793 3006 100 0 47 chr11 90645052 90645520 -60138033 - HERVH LTR ERV1 -7267 446 1 2636 79 145 3 chr11 90645522 90645914 -60137639 - LTR7 LTR ERV1 -2 448 1 1645 181 29 47 chr11 90646030 90646409 -60137144 - MER63B DNA MER1_type -39 397 26 394 58 0 0 chr11 90646409 90646461 -60137092 - MADE1 DNA Mariner 0 80 29 639 300 105 47 chr11 90646539 90646882 -60136671 - LTR33 LTR ERVL -154 367 5 213 214 0 0 chr11 90646892 90646934 -60136619 + L2 LINE L2 3216 3257 -15 24 32 0 0 chr11 90646947 90646978 -60136575 + AT_rich Low_complexity Low_complexity 1 31 0 1710 186 113 33 chr11 90647069 90647494 -60136059 - LTR2B LTR ERV1 0 490 32 1699 266 71 25 chr11 90647652 90648213 -60135340 - L1MEc LINE L1 -5702 694 108 1097 194 86 4 chr11 90648336 90648568 -60134985 + MLT1A1 LTR MaLR 112 362 -3 292 258 58 8 chr11 90649266 90649386 -60134167 + L1ME4a LINE L1 5678 5803 -318 680 137 0 0 chr11 90651097 90651199 -60132354 - AluSg/x SINE Alu -21 291 190 341 185 120 65 chr11 90651221 90651329 -60132224 + L1ME4a LINE L1 5803 5916 -205 307 136 0 0 chr11 90652180 90652224 -60131329 + L1MB7 LINE L1 5598 5641 -539 1658 174 44 44 chr11 90652260 90652589 -60130964 + L1MB7 LINE L1 5799 6130 -54 2453 52 17 7 chr11 90652589 90652880 -60130673 + AluY SINE Alu 1 294 -17 1658 174 44 44 chr11 90652880 90652911 -60130642 + L1MB7 LINE L1 6129 6159 -25 1336 125 39 5 chr11 90653159 90653367 -60130186 + MSTB LTR MaLR 212 426 0 292 316 143 8 chr11 90654593 90654726 -60128827 + L2 LINE L2 3158 3308 -5 577 336 71 45 chr11 90655123 90655633 -60127920 + L2 LINE L2 2746 3272 0 221 278 0 0 chr11 90655724 90655778 -60127775 + L3 LINE CR1 1523 1576 -1 519 253 48 75 chr11 90656207 90656393 -60127160 - MIR SINE MIR -70 192 12 370 292 99 18 chr11 90656670 90656841 -60126712 - MIR SINE MIR -66 196 12 471 266 91 19 chr11 90656979 90657027 -60126526 - MIR SINE MIR -78 184 141 2089 128 0 3 chr11 90657027 90657325 -60126228 + AluSg SINE Alu 10 306 -4 471 266 91 19 chr11 90657325 90657430 -60126123 - MIR SINE MIR -121 141 20 378 295 32 26 chr11 90657601 90657757 -60125796 - MLT1J LTR MaLR -43 468 312 783 270 36 36 chr11 90658261 90658509 -60125044 + MIR SINE MIR 7 254 -8 460 335 51 0 chr11 90658529 90658687 -60124866 - MIR SINE MIR -79 183 18 2281 82 4 0 chr11 90659117 90659421 -60124132 - AluY SINE Alu 0 305 1 727 77 0 0 chr11 90659689 90659793 -60123760 + AluY SINE Alu 206 309 -2 293 322 0 33 chr11 90659819 90659940 -60123613 + MIR3 SINE MIR 92 208 0 333 336 8 37 chr11 90660256 90660390 -60123163 + MIR SINE MIR 28 157 -105 2125 140 68 0 chr11 90660573 90660924 -60122629 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr11 90661122 90661146 -60122407 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr11 90661457 90661484 -60122069 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2379 113 0 0 chr11 90661486 90661797 -60121756 - AluSx SINE Alu 0 312 2 2219 90 0 34 chr11 90661813 90662135 -60121418 - AluY SINE Alu 0 311 1 887 146 16 138 chr11 90662398 90662651 -60120902 - MER101B LTR ERV1 -348 222 1 326 352 162 5 chr11 90662663 90662873 -60120680 - L2 LINE L2 -206 3066 2824 21 36 0 0 chr11 90662878 90662906 -60120647 + AT_rich Low_complexity Low_complexity 1 28 0 463 272 133 12 chr11 90663182 90663355 -60120198 + MIR SINE MIR 14 207 -55 27 29 0 0 chr11 90663379 90663413 -60120140 + AT_rich Low_complexity Low_complexity 1 34 0 272 284 50 52 chr11 90664084 90664253 -60119300 - MIR SINE MIR -66 142 14 520 261 156 11 chr11 90664469 90664649 -60118904 - L2 LINE L2 -4 3309 3104 1285 174 198 41 chr11 90664706 90664883 -60118670 + MLT2B1 LTR ERVL 1 149 -371 189 0 0 0 chr11 90664883 90664904 -60118649 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1285 174 198 41 chr11 90664904 90665089 -60118464 + MLT2B1 LTR ERVL 149 420 -100 4923 151 15 35 chr11 90665123 90665848 -60117705 - MER4D LTR ERV1 0 903 165 300 27 0 0 chr11 90665848 90665885 -60117668 + (TG)n Simple_repeat Simple_repeat 2 38 0 1750 121 0 115 chr11 90665885 90666207 -60117346 - AluSg1 SINE Alu -24 285 1 4923 151 15 35 chr11 90666207 90666401 -60117152 - MER4D LTR ERV1 -736 167 1 1912 141 40 34 chr11 90666472 90666770 -60116783 - AluSx SINE Alu -12 300 1 722 162 0 8 chr11 90666816 90666933 -60116620 + FLAM_C SINE Alu 2 117 -16 231 222 63 0 chr11 90667219 90667282 -60116271 - L1ME LINE L1 -303 6361 6295 1653 146 49 3 chr11 90667445 90667733 -60115820 - MER34C LTR ERV1 -284 301 1 229 337 0 11 chr11 90667770 90667862 -60115691 - L1ME LINE L1 -2268 6038 5948 1159 212 153 53 chr11 90667901 90668392 -60115161 + LTR10B LTR ERV1 1 540 -7 326 279 73 15 chr11 90668527 90668663 -60114890 - L1ME LINE L1 -878 5766 5623 362 260 43 49 chr11 90669202 90669439 -60114114 - L1ME LINE L1 -4833 1811 1461 1609 138 45 23 chr11 90669456 90669794 -60113759 - MER4A LTR ERV1 0 664 261 538 162 0 10 chr11 90669794 90669893 -60113660 - MER4A LTR ERV1 -566 98 1 285 86 0 69 chr11 90669921 90669979 -60113574 - AluJo SINE Alu -166 136 85 2066 228 6 7 chr11 90669979 90670733 -60112820 - L1MC/D LINE L1 -692 5667 4915 2107 103 3 40 chr11 90670733 90671054 -60112499 - AluY SINE Alu -2 309 1 3005 136 74 27 chr11 90671068 90671143 -60112410 - L1MC3 LINE L1 -8 7777 7707 1695 163 72 0 chr11 90671143 90671419 -60112134 - AluSx SINE Alu -14 298 3 3005 136 74 27 chr11 90671419 90671975 -60111578 - L1MC3 LINE L1 -78 7707 7116 1388 225 62 0 chr11 90671979 90672255 -60111298 - AluJb SINE Alu -19 293 1 650 271 83 23 chr11 90672256 90672699 -60110854 - L1ME LINE L1 -5053 1152 683 614 331 37 15 chr11 90673105 90673507 -60110046 - L1ME LINE L1 -5977 419 9 * 2598 192 71 41 chr11 90673502 90674004 -60109549 - L1MC4a LINE L1 0 7808 7275 833 163 8 0 chr11 90674004 90674133 -60109420 + FLAM_C SINE Alu 1 130 -3 2598 192 71 41 chr11 90674133 90674379 -60109174 - L1MC4a LINE L1 -533 7275 7038 1100 119 50 10 chr11 90674480 90674681 -60108872 - L1MA3 LINE L1 0 6305 6097 7510 155 21 4 chr11 90674719 90676854 -60106699 - L1MA3 LINE L1 -381 5923 3747 443 208 0 28 chr11 90676884 90676990 -60106563 + L1 LINE L1 2986 3088 -3058 2236 111 3 0 chr11 90676990 90677287 -60106266 + AluSx SINE Alu 1 298 -14 887 160 0 0 chr11 90677545 90677676 -60105877 + FLAM_C SINE Alu 3 133 -10 397 309 48 39 chr11 90677707 90677937 -60105616 - L1MC/D LINE L1 -2128 5680 5449 186 247 169 34 chr11 90678583 90678672 -60104881 - MIR SINE MIR -5 257 157 760 171 0 0 chr11 90678695 90678818 -60104735 - FLAM_C SINE Alu -9 124 2 1922 173 54 5 chr11 90678845 90679216 -60104337 - MLT1B LTR MaLR -1 389 1 329 339 0 9 chr11 90679231 90679340 -60104213 - MIR SINE MIR -120 142 35 373 213 56 120 chr11 90679466 90679682 -60103871 - LTR67 LTR ERVL 0 557 356 242 278 41 21 chr11 90679736 90679833 -60103720 - LTR67 LTR ERVL -336 221 123 2209 161 3 8 chr11 90680531 90680898 -60102655 + MLT1A1 LTR MaLR 1 365 0 240 346 0 48 chr11 90681089 90681193 -60102360 + MIR3 SINE MIR 104 202 -6 21 0 0 0 chr11 90681255 90681276 -60102277 + AT_rich Low_complexity Low_complexity 1 21 0 264 326 99 23 chr11 90681780 90681908 -60101645 + MIR SINE MIR 30 171 -56 487 265 73 0 chr11 90682667 90682803 -60100750 + MIR SINE MIR 61 206 -56 380 261 43 26 chr11 90682877 90682992 -60100561 + MIR SINE MIR 5 121 -141 19269 131 15 86 chr11 90683035 90687258 -60096295 + L1P LINE L1 12 3938 -2208 1114 144 0 25 chr11 90687565 90687767 -60095786 + L1 LINE L1 2385 2581 -4268 554 194 135 0 chr11 90687768 90688005 -60095548 + L1 LINE L1 3741 4009 -2839 2221 126 3 16 chr11 90688009 90688326 -60095227 + AluSq SINE Alu 1 313 0 2585 215 30 4 chr11 90688927 90689705 -60093848 + L1 LINE L1 3955 4793 -2055 2053 132 16 19 chr11 90689730 90690101 -60093452 + L1MA6 LINE L1 5931 6300 0 808 294 58 22 chr11 90690897 90691273 -60092280 + MER115 DNA AcHobo 1 434 -259 488 147 69 1 chr11 90691307 90691420 -60092133 - L1ME LINE L1 -376 5793 5672 1314 206 70 6 chr11 90691585 90691915 -60091638 - L1MB5 LINE L1 0 6174 5824 1717 184 36 22 chr11 90691938 90692302 -60091251 + MLT1A2 LTR MaLR 6 374 0 355 221 26 0 chr11 90692361 90692438 -60091115 - L1MC1 LINE L1 -6 6327 6249 2579 162 34 12 chr11 90692438 90692938 -60090615 - L1MB5 LINE L1 -357 5827 5317 2323 146 0 3 chr11 90693084 90693467 -60090086 - L1MB3 LINE L1 -7 6176 5795 343 335 141 22 chr11 90694051 90694278 -60089275 + MIR SINE MIR 6 259 -3 345 269 60 8 chr11 90695259 90695393 -60088160 + L1 LINE L1 2481 2621 -3525 1105 162 20 15 chr11 90695420 90695624 -60087929 - MER58A DNA MER1_type -8 216 12 24 0 0 0 chr11 90695786 90695810 -60087743 + AT_rich Low_complexity Low_complexity 1 24 0 7898 13 0 0 chr11 90695811 90696900 -60086653 - L1PA2 LINE L1 -1 6154 5066 12091 29 1 0 chr11 90696900 90698432 -60085121 + L1P LINE L1 2516 4048 -2098 227 316 43 11 chr11 90698454 90698641 -60084912 + L1 LINE L1 2635 2827 -3319 1871 170 3 3 chr11 90698652 90698964 -60084589 - AluJo SINE Alu 0 312 1 1370 113 45 0 chr11 90699030 90699252 -60084301 - L1MA5A LINE L1 -1 6296 6065 22 0 0 0 chr11 90699412 90699434 -60084119 + AT_rich Low_complexity Low_complexity 1 22 0 882 236 124 7 chr11 90699587 90699862 -60083691 - AluSx SINE Alu -3 309 3 361 275 66 48 chr11 90699863 90700030 -60083523 - L1M4 LINE L1 -934 5212 5043 251 275 9 9 chr11 90700052 90700161 -60083392 + (TA)n Simple_repeat Simple_repeat 1 109 0 23 78 0 0 chr11 90700366 90700417 -60083136 + AT_rich Low_complexity Low_complexity 1 51 0 49 0 0 0 chr11 90700745 90700794 -60082759 + AT_rich Low_complexity Low_complexity 1 49 0 1563 204 0 0 chr11 90700794 90701064 -60082489 - AluJo SINE Alu -42 270 1 269 34 0 85 chr11 90701230 90701289 -60082264 + (TTTTTA)n Simple_repeat Simple_repeat 2 55 0 519 289 36 122 chr11 90701435 90701506 -60082047 - L2 LINE L2 -12 3260 3185 1711 190 0 13 chr11 90701506 90701806 -60081747 + AluJb SINE Alu 1 296 -16 519 289 36 122 chr11 90701806 90702063 -60081490 - L2 LINE L2 -87 3185 2960 242 194 65 0 chr11 90702099 90702194 -60081359 + (TA)n Simple_repeat Simple_repeat 1 105 -10 324 0 0 0 chr11 90702194 90702230 -60081323 + (TG)n Simple_repeat Simple_repeat 2 37 0 242 194 65 0 chr11 90702230 90702242 -60081311 + (TA)n Simple_repeat Simple_repeat 105 115 0 2178 110 10 13 chr11 90702344 90702643 -60080910 - AluSx SINE Alu -14 298 1 268 299 197 8 chr11 90702674 90702791 -60080762 + L2 LINE L2 3134 3272 0 241 193 0 70 chr11 90703120 90703177 -60080376 - L2 LINE L2 0 3313 3261 1584 196 62 68 chr11 90703305 90703668 -60079885 + L1MC5 LINE L1 7293 7652 -309 2185 98 11 0 chr11 90703668 90703955 -60079598 + AluSg SINE Alu 2 291 -19 1584 196 62 68 chr11 90703955 90704240 -60079313 + L1MC5 LINE L1 7652 7937 -24 22 0 0 0 chr11 90704631 90704653 -60078900 + AT_rich Low_complexity Low_complexity 1 22 0 436 247 0 0 chr11 90704653 90704746 -60078807 - FLAM_A SINE Alu -19 123 31 363 44 0 0 chr11 90704769 90704814 -60078739 + (TG)n Simple_repeat Simple_repeat 2 46 0 287 312 54 11 chr11 90704874 90704967 -60078586 - MIR3 SINE MIR -21 187 91 231 330 104 0 chr11 90705945 90706051 -60077502 + MIR3 SINE MIR 81 197 -11 1914 148 47 22 chr11 90706100 90706464 -60077089 + THE1C LTR MaLR 3 375 0 260 323 50 25 chr11 90706465 90706626 -60076927 - MIR SINE MIR -62 200 36 195 286 18 0 chr11 90706704 90706760 -60076793 - L2 LINE L2 -19 3253 3197 267 233 22 63 chr11 90706887 90707008 -60076545 - MIR SINE MIR -46 216 104 2330 103 0 16 chr11 90707011 90707323 -60076230 + AluSx SINE Alu 1 307 -5 298 175 250 0 chr11 90707919 90707999 -60075554 - L2 LINE L2 -12 3301 3202 474 278 23 6 chr11 90708016 90708189 -60075364 - MIR SINE MIR 0 262 87 1314 184 109 8 chr11 90708199 90708455 -60075098 - AluJo SINE Alu -30 282 1 315 230 26 71 chr11 90708605 90708718 -60074835 - MIR SINE MIR -76 186 79 2290 115 0 3 chr11 90708952 90709264 -60074289 - AluSx SINE Alu -1 311 1 256 237 76 76 chr11 90709592 90709710 -60073843 - MIR3 SINE MIR -21 187 70 282 293 78 9 chr11 90709741 90709857 -60073696 - MIR3 SINE MIR -51 157 34 311 315 123 25 chr11 90710124 90710286 -60073267 - LTR16C LTR ERVL -234 257 80 22 0 0 0 chr11 90711124 90711146 -60072407 + AT_rich Low_complexity Low_complexity 1 22 0 201 276 0 0 chr11 90711475 90711533 -60072020 + MIR3 SINE MIR 110 167 -41 255 164 49 16 chr11 90711643 90711704 -60071849 + MIR SINE MIR 90 152 -110 635 236 81 11 chr11 90713164 90713338 -60070215 - MLT1J LTR MaLR -317 194 9 206 250 197 0 chr11 90713528 90713604 -60069949 - L2 LINE L2 0 3313 3223 24335 81 16 1 chr11 90714230 90718364 -60065189 - L1PA7 LINE L1 -1 6153 1962 5244 141 5 1 chr11 90718365 90719155 -60064398 + L1PA15 LINE L1 5373 6165 0 587 191 36 83 chr11 90719243 90719577 -60063976 + L1MC5 LINE L1 6845 7220 -741 2675 88 97 7 chr11 90720342 90720753 -60062800 + LTR7 LTR ERV1 1 448 -2 16801 128 34 22 chr11 90720755 90723554 -60059999 + HERVH LTR ERV1 1 2830 -4883 2601 100 8 11 chr11 90723554 90723934 -60059619 + HERVH LTR ERV1 3357 3735 -3978 2100 142 1 5 chr11 90723945 90724272 -60059281 + HERVH LTR ERV1 3994 4308 -3405 505 51 25 63 chr11 90724270 90724349 -60059204 + HERVH LTR ERV1 7638 7713 0 * 2336 108 123 43 chr11 90724349 90724764 -60058789 + LTR7 LTR ERV1 1 448 -2 420 339 22 22 chr11 90724777 90724824 -60058729 - MIR SINE MIR -73 189 143 2615 174 52 78 chr11 90724824 90725531 -60058022 + LTR8 LTR ERV1 3 691 0 420 339 22 22 chr11 90725531 90725666 -60057887 - MIR SINE MIR -118 144 7 1293 179 153 36 chr11 90726271 90726578 -60056975 - MER61A LTR ERV1 0 343 1 931 226 99 28 chr11 90726891 90727355 -60056198 + MER39 LTR ERV1 8 542 0 396 277 108 7 chr11 90727598 90727746 -60055807 - MIR SINE MIR -99 163 1 2033 132 34 0 chr11 90727946 90728241 -60055312 + AluSx SINE Alu 1 305 -7 492 86 0 0 chr11 90728241 90728311 -60055242 + (T)n Simple_repeat Simple_repeat 1 70 0 198 0 0 0 chr11 90728469 90728491 -60055062 + (A)n Simple_repeat Simple_repeat 1 22 0 599 0 0 14 chr11 90728491 90728563 -60054990 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 371 214 110 76 chr11 90728665 90728810 -60054743 + MIR3 SINE MIR 2 151 -57 1107 251 131 57 chr11 90728854 90729365 -60054188 - MLT1H LTR MaLR 0 549 1 355 253 11 0 chr11 90729377 90729472 -60054081 + MER103 DNA DNA 1 96 -70 455 290 17 11 chr11 90730032 90730208 -60053345 + MIR SINE MIR 26 202 -60 235 206 0 59 chr11 90730226 90730294 -60053259 - L2 LINE L2 -2 3311 3248 * 1221 308 173 18 chr11 90730286 90731405 -60052148 - L2 LINE L2 -310 3003 1712 274 273 186 37 chr11 90731405 90731647 -60051906 + MLT1J LTR MaLR 1 278 -233 3252 77 26 0 chr11 90731651 90732069 -60051484 + PABL_B LTR ERV1 1 429 -238 3060 80 25 25 chr11 90732069 90732517 -60051036 - LTR7 LTR ERV1 -2 448 1 2531 81 51 0 chr11 90732517 90732888 -60050665 - HERVH LTR ERV1 0 7713 7324 1380 138 14 0 chr11 90732888 90733105 -60050448 - HERVH LTR ERV1 -1894 5819 5600 4874 117 27 3 chr11 90733106 90733810 -60049743 - HERVH LTR ERV1 -2564 5149 4429 219 208 75 0 chr11 90734001 90734054 -60049499 + L2 LINE L2 3196 3252 -20 8182 109 18 41 chr11 90734081 90735409 -60048144 - HERVH LTR ERV1 -3276 4437 3140 * 13839 105 21 24 chr11 90735388 90737496 -60046057 - HERVH LTR ERV1 -4718 2995 894 553 170 27 45 chr11 90737471 90737583 -60045970 - HERVH LTR ERV1 -7603 110 1 * 3088 88 2 24 chr11 90737586 90738042 -60045511 - LTR7 LTR ERV1 -2 448 3 1826 102 0 4 chr11 90738043 90738288 -60045265 + PABL_B LTR ERV1 424 667 0 196 218 308 0 chr11 90738382 90738515 -60045038 - L2 LINE L2 -1612 1702 1529 34 0 0 22 chr11 90739087 90739104 -60044449 + AT_rich Low_complexity Low_complexity 1 17 -27 1715 113 4 9 chr11 90739104 90739333 -60044220 + AluSq SINE Alu 1 228 -85 34 0 0 22 chr11 90739333 90739360 -60044193 + AT_rich Low_complexity Low_complexity 17 44 0 447 145 26 0 chr11 90740071 90740147 -60043406 - AluS SINE Alu -11 301 224 1675 71 0 0 chr11 90740378 90740574 -60042979 - AluSx SINE Alu -116 196 1 2138 122 10 0 chr11 90741513 90741807 -60041746 - AluSg SINE Alu -13 297 1 5482 183 89 47 chr11 90741862 90742562 -60040991 + L1MC3 LINE L1 6427 7096 -689 2090 127 23 52 chr11 90742562 90742948 -60040605 - THE1C LTR MaLR 0 375 1 5482 183 89 47 chr11 90742948 90743550 -60040003 + L1MC3 LINE L1 7096 7784 -1 1991 116 19 5 chr11 90743650 90744004 -60039549 - LTR7 LTR ERV1 -2 448 1 2369 101 53 13 chr11 90744004 90744381 -60039172 - HERVH LTR ERV1 0 7713 7322 1401 139 19 0 chr11 90744379 90744595 -60038958 - HERVH LTR ERV1 -1894 5819 5600 * 26183 136 60 42 chr11 90744596 90749650 -60033903 - HERVH LTR ERV1 -2564 5149 1 2016 117 5 8 chr11 90749652 90750012 -60033541 - LTR7 LTR ERV1 -2 448 1 247 299 82 30 chr11 90750468 90750602 -60032951 + MIR3 SINE MIR 10 150 -58 2191 136 0 0 chr11 90750602 90750912 -60032641 + AluSx SINE Alu 1 310 -2 414 314 27 53 chr11 90751036 90751224 -60032329 - MIR SINE MIR -79 183 1 404 238 196 0 chr11 90751568 90751711 -60031842 - MER5A DNA MER1_type -10 179 9 1385 151 23 0 chr11 90753453 90753671 -60029882 - AluSg/x SINE Alu -12 300 78 2363 96 3 0 chr11 90753686 90753987 -60029566 - AluSp SINE Alu -11 302 1 22 56 0 0 chr11 90756490 90756526 -60027027 + AT_rich Low_complexity Low_complexity 1 36 0 289 319 15 26 chr11 90757943 90758192 -60025361 + GA-rich Low_complexity Low_complexity 1 246 0 339 276 0 0 chr11 90808628 90808715 -59974838 - L1MC4 LINE L1 -1342 6700 6614 2939 108 0 21 chr11 90808716 90809144 -59974409 - MLT2A1 LTR ERVL -25 419 1 17739 67 22 16 chr11 90809144 90811464 -59972089 - HERVL-A1 LTR ERVL 0 5654 3323 9109 68 19 2 chr11 90811476 90812655 -59970898 - HERVL-A2 LTR ERVL -4456 1198 1 329 59 78 0 chr11 90812655 90812706 -59970847 - MLT2A2 LTR ERVL 0 453 399 360 219 0 62 chr11 90812726 90812822 -59970731 - L1MC4 LINE L1 -1339 6703 6614 259 151 0 41 chr11 90812840 90812913 -59970640 + (TA)n Simple_repeat Simple_repeat 2 71 0 914 81 0 0 chr11 90812913 90813024 -59970529 - HERVL LTR ERVL -3278 2376 2266 506 75 12 0 chr11 90813024 90813104 -59970449 + (TA)n Simple_repeat Simple_repeat 2 82 0 2881 86 0 5 chr11 90813104 90813490 -59970063 - MLT2A1 LTR ERVL -60 384 1 2075 81 30 37 chr11 90813542 90813840 -59969713 - AluY SINE Alu -15 296 1 251 229 9 83 chr11 90813860 90813969 -59969584 - MIR SINE MIR -2 260 160 208 163 23 0 chr11 90813970 90814013 -59969540 + (CA)n Simple_repeat Simple_repeat 2 45 0 420 222 111 26 chr11 90814035 90814152 -59969401 - MIR SINE MIR -125 137 11 373 295 0 0 chr11 90814526 90814621 -59968932 + MIR SINE MIR 74 168 -94 268 269 195 0 chr11 90814620 90814748 -59968805 - MIR3 SINE MIR -85 123 9 * 237 258 54 21 chr11 90815164 90815257 -59968296 - L2 LINE L2 -5 3308 3213 252 143 0 0 chr11 90815525 90815567 -59967986 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 265 228 59 69 chr11 90816789 90816890 -59966663 - L3b LINE CR1 -213 1370 1271 615 318 28 36 chr11 90817160 90817412 -59966141 - MIR SINE MIR 0 262 13 196 359 0 0 chr11 90818504 90818582 -59964971 - MIR SINE MIR -1 261 184 222 167 343 10 chr11 90818691 90818793 -59964760 - MIR SINE MIR -88 174 39 2086 134 0 3 chr11 90818973 90819271 -59964282 + AluSq SINE Alu 1 297 -16 303 239 68 0 chr11 90819289 90819377 -59964176 - L1MC4 LINE L1 -1339 6703 6610 642 234 40 6 chr11 90821006 90821181 -59962372 + L1MEc LINE L1 60 240 -6156 280 324 34 0 chr11 90821503 90821651 -59961902 + L1ME LINE L1 5567 5719 -402 21 71 0 0 chr11 90821750 90821792 -59961761 + AT_rich Low_complexity Low_complexity 1 42 0 430 190 35 56 chr11 90821824 90821966 -59961587 + L1ME4a LINE L1 5961 6099 -22 608 314 70 12 chr11 90823711 90823953 -59959600 - L3 LINE CR1 -14 1563 1308 306 407 37 0 chr11 90826084 90826192 -59957361 + L2 LINE L2 3142 3253 -19 529 215 46 8 chr11 90826866 90826996 -59956557 - MIR SINE MIR -74 188 54 326 176 27 0 chr11 90827201 90827275 -59956278 + T-rich Low_complexity Low_complexity 2 77 0 481 235 13 105 chr11 90827703 90827760 -59955793 - MIR3 SINE MIR -3 205 144 470 315 43 0 chr11 90827760 90827944 -59955609 - MER117 DNA MER1_type -4 193 2 481 235 13 105 chr11 90827944 90828039 -59955514 - MIR3 SINE MIR -64 144 67 205 265 121 12 chr11 90828043 90828126 -59955427 + MIR SINE MIR 162 253 -9 255 276 9 57 chr11 90828287 90828392 -59955161 + MIR SINE MIR 106 205 -57 22 0 0 0 chr11 90832799 90832821 -59950732 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr11 90833481 90833511 -59950042 + AT_rich Low_complexity Low_complexity 1 30 0 183 80 0 0 chr11 90834527 90834552 -59949001 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 386 306 62 14 chr11 90835854 90835998 -59947555 + MIR SINE MIR 61 211 -51 296 336 16 16 chr11 90836233 90836358 -59947195 - MIR3 SINE MIR -39 169 45 877 299 51 29 chr11 90836551 90837002 -59946551 + MARNA DNA Mariner 57 517 -69 694 280 59 34 chr11 90838648 90838887 -59944666 - MIR SINE MIR 0 262 18 924 163 70 53 chr11 90839195 90839422 -59944131 + L1MB8 LINE L1 5942 6172 -6 1185 192 39 91 chr11 90840347 90840811 -59942742 + L1MC5 LINE L1 7151 7590 -371 2096 253 88 123 chr11 90841109 90842333 -59941220 + L1MC4a LINE L1 6405 7585 -223 273 207 35 69 chr11 90842388 90842504 -59941049 + L1MC5 LINE L1 7826 7937 -24 207 200 0 0 chr11 90842567 90842612 -59940941 + T-rich Low_complexity Low_complexity 1 45 0 265 215 196 44 chr11 90843192 90843350 -59940203 + L2 LINE L2 1674 1855 -1459 1007 250 32 0 chr11 90843374 90843590 -59939963 + MER58A DNA MER1_type 1 223 -1 2837 257 80 72 chr11 90843591 90845027 -59938526 + L2 LINE L2 1872 3313 0 183 315 54 62 chr11 90845072 90845202 -59938351 + L2 LINE L2 3151 3279 -34 200 305 136 51 chr11 90846840 90846958 -59936595 + L2 LINE L2 2959 3086 -186 274 293 71 0 chr11 90847107 90847206 -59936347 + L2 LINE L2 2233 2338 -976 2333 217 85 24 chr11 90847208 90848216 -59935337 + L1ME2 LINE L1 4903 5979 -185 2069 132 26 0 chr11 90848710 90849014 -59934539 + AluSx SINE Alu 1 312 0 222 213 43 0 chr11 90849618 90849665 -59933888 + MIR SINE MIR 78 126 -136 3056 223 29 27 chr11 90849814 90850747 -59932806 + L1M4 LINE L1 2798 3732 -2414 520 263 29 2 chr11 90850832 90850986 -59932567 - L1MC/D LINE L1 -450 5671 5532 1149 82 5 96 chr11 90851093 90851224 -59932329 + MLT2A1 LTR ERVL 255 396 -48 204 0 54 27 chr11 90851224 90851261 -59932292 + (TA)n Simple_repeat Simple_repeat 2 39 0 1149 82 5 96 chr11 90851261 90851302 -59932251 + MLT2A1 LTR ERVL 396 407 -37 414 0 0 0 chr11 90851302 90851348 -59932205 + (TA)n Simple_repeat Simple_repeat 2 47 0 1149 82 5 96 chr11 90851348 90851382 -59932171 + MLT2A1 LTR ERVL 407 443 -1 326 300 147 72 chr11 90851397 90851704 -59931849 + L2 LINE L2 2943 3272 0 234 139 13 38 chr11 90852087 90852166 -59931387 + (TTTA)n Simple_repeat Simple_repeat 3 79 0 219 114 0 0 chr11 90852686 90852721 -59930832 + (T)n Simple_repeat Simple_repeat 1 35 0 380 184 197 75 chr11 90852949 90853096 -59930457 + MIR3 SINE MIR 29 193 -15 979 226 16 43 chr11 90853574 90853831 -59929722 - MIR SINE MIR -10 252 3 259 284 14 0 chr11 90854474 90854548 -59929005 - L2 LINE L2 0 3313 3239 29 0 0 0 chr11 90854909 90854938 -59928615 + AT_rich Low_complexity Low_complexity 1 29 0 250 82 73 27 chr11 90854964 90855074 -59928479 + (TA)n Simple_repeat Simple_repeat 2 116 0 407 73 0 0 chr11 90855074 90855129 -59928424 + MLT2A1 LTR ERVL 390 444 0 192 49 66 33 chr11 90855129 90855190 -59928363 + (TA)n Simple_repeat Simple_repeat 2 64 0 2997 71 30 5 chr11 90855319 90855725 -59927828 - MLT2A1 LTR ERVL -28 416 1 4433 271 50 31 chr11 90855730 90857522 -59926031 - L1MEc LINE L1 -4535 1861 37 448 291 159 0 chr11 90858562 90858782 -59924771 - MIR SINE MIR -6 256 2 441 296 178 30 chr11 90859769 90860033 -59923520 + L3 LINE CR1 1257 1559 -18 21 57 0 0 chr11 90860421 90860456 -59923097 + AT_rich Low_complexity Low_complexity 1 35 0 471 252 156 15 chr11 90860501 90860771 -59922782 - L1ME4a LINE L1 -15 6106 5799 235 0 0 0 chr11 90861038 90861071 -59922482 - Alu SINE Alu -4 298 266 250 233 60 56 chr11 90861099 90861224 -59922329 - MIR SINE MIR -61 147 79 21 0 0 0 chr11 90861291 90861312 -59922241 + AT_rich Low_complexity Low_complexity 1 21 0 2159 125 3 0 chr11 90861466 90861762 -59921791 + AluSq SINE Alu 1 297 -16 206 159 0 23 chr11 90862056 90862100 -59921453 + (CTTTA)n Simple_repeat Simple_repeat 2 44 0 383 243 191 48 chr11 90863057 90863246 -59920307 + MIR SINE MIR 47 262 0 560 356 122 14 chr11 90863888 90864593 -59918960 + L2 LINE L2 1919 2699 -615 194 341 82 0 chr11 90865173 90865258 -59918295 - MIR SINE MIR -120 142 51 396 0 0 0 chr11 90865895 90865939 -59917614 + (CA)n Simple_repeat Simple_repeat 2 45 0 195 245 32 85 chr11 90866018 90866112 -59917441 - MIR SINE MIR -13 249 161 297 265 24 114 chr11 90866752 90866918 -59916635 + MIR3 SINE MIR 30 180 -28 315 206 119 24 chr11 90866936 90867062 -59916491 - MER103 DNA DNA -19 147 10 376 280 54 0 chr11 90867556 90867649 -59915904 - L2 LINE L2 -38 3234 3137 265 300 18 27 chr11 90868199 90868309 -59915244 - MIR SINE MIR -65 143 35 188 239 0 22 chr11 90868849 90868895 -59914658 - MIR SINE MIR -71 191 147 * 368 270 68 54 chr11 90868881 90869070 -59914483 + MIR SINE MIR 64 251 -11 2431 75 0 10 chr11 90869377 90869684 -59913869 + AluY SINE Alu 1 304 -7 2453 91 0 0 chr11 90870461 90870769 -59912784 + AluSc SINE Alu 1 308 -1 186 355 136 27 chr11 90870909 90871019 -59912534 + MIR SINE MIR 108 229 -33 2663 120 36 7 chr11 90871376 90871792 -59911761 + MSTA LTR MaLR 1 428 0 2231 120 7 0 chr11 90872228 90872527 -59911026 + AluSx SINE Alu 1 301 -11 930 262 71 62 chr11 90872597 90873063 -59910490 - MLT1J LTR MaLR 0 511 42 191 370 56 0 chr11 90873076 90873184 -59910369 + L2 LINE L2 2199 2312 -1002 328 344 16 8 chr11 90873467 90873595 -59909958 + L2 LINE L2 2932 3060 -212 366 23 0 0 chr11 90873754 90873797 -59909756 + (CA)n Simple_repeat Simple_repeat 1 43 0 204 371 194 0 chr11 90873996 90874171 -59909382 + MIR SINE MIR 48 256 -6 29 47 0 0 chr11 90874298 90874341 -59909212 + AT_rich Low_complexity Low_complexity 1 43 0 188 422 49 10 chr11 90875416 90875518 -59908035 + L2 LINE L2 3125 3230 -42 2054 151 3 0 chr11 90875977 90876281 -59907272 + AluJb SINE Alu 1 305 -7 605 300 157 41 chr11 90877130 90877781 -59905772 + L2 LINE L2 2544 3255 -17 319 307 110 18 chr11 90878152 90878315 -59905238 - MIR SINE MIR -29 233 56 1625 180 43 3 chr11 90878465 90878765 -59904788 + AluJo SINE Alu 1 312 0 324 0 0 0 chr11 90879120 90879156 -59904397 + (CA)n Simple_repeat Simple_repeat 2 37 0 586 192 30 60 chr11 90879167 90879249 -59904304 - MIR SINE MIR -25 237 161 513 224 91 12 chr11 90879249 90879414 -59904139 - MER104 DNA MER2_type 0 180 3 586 192 30 60 chr11 90879414 90879498 -59904055 - MIR SINE MIR -101 161 76 1174 213 10 110 chr11 90880241 90880659 -59902894 + L2 LINE L2 2933 3308 -5 246 330 27 36 chr11 90881284 90881396 -59902157 + L3 LINE CR1 1248 1358 -219 444 310 116 30 chr11 90881412 90881644 -59901909 - MIR SINE MIR -6 256 5 435 288 27 9 chr11 90882734 90882845 -59900708 - MIR SINE MIR -80 128 16 253 335 60 12 chr11 90883163 90883358 -59900195 - MIR SINE MIR -34 228 25 297 210 86 0 chr11 90883844 90883925 -59899628 + MIR SINE MIR 112 199 -63 187 314 0 0 chr11 90884019 90884070 -59899483 + L2 LINE L2 3211 3261 -11 809 201 135 8 chr11 90884216 90884460 -59899093 - MLT1D LTR MaLR -230 275 1 781 206 104 20 chr11 90884483 90884821 -59898732 - MLT1-int LTR MaLR -1191 180 4 266 327 157 33 chr11 90885050 90885203 -59898350 + MIR SINE MIR 16 187 -75 469 284 21 98 chr11 90885221 90885457 -59898096 - MIR SINE MIR -43 219 2 192 260 125 10 chr11 90886098 90886194 -59897359 - MIR3 SINE MIR -16 192 86 226 324 0 0 chr11 90886203 90886271 -59897282 - L2 LINE L2 -9 3263 3196 1051 202 62 29 chr11 90886380 90886623 -59896930 - MIR SINE MIR 0 262 12 571 298 45 10 chr11 90886871 90887069 -59896484 + MIR SINE MIR 6 210 -52 278 278 45 75 chr11 90887151 90887284 -59896269 + MIR3 SINE MIR 7 135 -73 3126 174 41 0 chr11 90887404 90887944 -59895609 - MER68 LTR ERV1 0 562 1 524 238 39 121 chr11 90888002 90888284 -59895269 - MIR SINE MIR 0 262 4 217 381 58 11 chr11 90888306 90888495 -59895058 - MIR SINE MIR -48 214 17 23 54 0 0 chr11 90889509 90889546 -59894007 + AT_rich Low_complexity Low_complexity 1 37 0 405 349 19 17 chr11 90891546 90891815 -59891738 + L3 LINE CR1 1243 1575 -2 24 32 0 0 chr11 90892073 90892104 -59891449 + AT_rich Low_complexity Low_complexity 1 31 0 322 211 149 18 chr11 90892187 90892301 -59891252 - L1ME4a LINE L1 -11 6110 5982 954 238 0 33 chr11 90892567 90892777 -59890776 - MIR SINE MIR -14 248 46 272 290 0 0 chr11 90893109 90893178 -59890375 - MIR SINE MIR -75 133 65 207 349 12 0 chr11 90893256 90893339 -59890214 - MIR SINE MIR -133 129 46 220 279 15 15 chr11 90893493 90893561 -59889992 - MIR SINE MIR -96 166 99 635 345 22 4 chr11 90893607 90893833 -59889720 - MIR SINE MIR -16 246 17 2253 112 26 0 chr11 90893909 90894212 -59889341 - AluSq SINE Alu -2 311 1 220 250 0 0 chr11 90894995 90895043 -59888510 - L2 LINE L2 0 3313 3266 23 0 0 0 chr11 90895540 90895563 -59887990 + AT_rich Low_complexity Low_complexity 1 23 0 420 258 118 22 chr11 90895754 90895932 -59887621 + MIR SINE MIR 13 207 -55 201 94 0 0 chr11 90896138 90896170 -59887383 + (TG)n Simple_repeat Simple_repeat 2 33 0 187 56 83 0 chr11 90896760 90896796 -59886757 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2057 100 0 28 chr11 90896802 90897092 -59886461 - AluSx SINE Alu -30 282 1 436 343 40 30 chr11 90897709 90898012 -59885541 + L2 LINE L2 2545 2850 -464 259 224 121 0 chr11 90898367 90898425 -59885128 + L2 LINE L2 3247 3311 -2 201 74 0 0 chr11 90898578 90898605 -59884948 + (GGAGA)n Simple_repeat Simple_repeat 4 30 0 4767 159 26 6 chr11 90899572 90900792 -59882761 - L1MB8 LINE L1 -5 6173 4932 1260 225 97 0 chr11 90900770 90901130 -59882423 - L1MB8 LINE L1 -1746 4400 4006 * 354 98 0 0 chr11 90901617 90901668 -59881885 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 222 336 88 35 chr11 90901690 90901803 -59881750 - L2 LINE L2 -20 3252 3134 244 196 33 109 chr11 90901929 90902021 -59881532 + MIR3 SINE MIR 13 97 -111 424 237 15 38 chr11 90902053 90902184 -59881369 + MER117 DNA MER1_type 1 128 -69 407 319 58 0 chr11 90902985 90903123 -59880430 - MIR SINE MIR -116 146 1 669 138 101 0 chr11 90904195 90904304 -59879249 - FLAM_C SINE Alu -22 121 2 246 202 135 30 chr11 90904305 90904400 -59879153 - MIR3 SINE MIR -42 166 100 212 268 146 41 chr11 90904697 90904820 -59878733 - L2 LINE L2 0 3272 3137 216 291 68 58 chr11 90905203 90905306 -59878247 + L2 LINE L2 3150 3253 -19 288 335 42 24 chr11 90905307 90905474 -59878079 - L2 LINE L2 -579 2735 2566 241 242 227 0 chr11 90905739 90905805 -59877748 - MIR SINE MIR -63 145 65 263 350 167 25 chr11 90906869 90907293 -59876260 - L2 LINE L2 -230 3042 2545 569 271 17 23 chr11 90907315 90907492 -59876061 + MER5A DNA MER1_type 12 187 -2 703 218 0 0 chr11 90908106 90908239 -59875314 - MIR SINE MIR -70 192 60 181 343 49 29 chr11 90909300 90909402 -59874151 - L2 LINE L2 -9 3263 3160 196 333 30 0 chr11 90910510 90910576 -59872977 - MIR SINE MIR -118 144 77 185 295 77 26 chr11 90910798 90910876 -59872677 + MIR SINE MIR 35 116 -92 969 153 0 0 chr11 90911005 90911181 -59872372 + (TCTA)n Simple_repeat Simple_repeat 1 176 0 218 303 57 16 chr11 90912081 90912203 -59871350 - MIR SINE MIR -4 258 132 185 376 0 21 chr11 90912570 90912663 -59870890 + L2 LINE L2 3172 3262 -10 40685 49 5 4 chr11 90913080 90919221 -59864332 + L1PA4 LINE L1 13 6163 0 802 165 8 8 chr11 90919882 90920015 -59863538 + FLAM_A SINE Alu 1 133 0 206 254 68 0 chr11 90920350 90920409 -59863144 - MIR SINE MIR -12 250 188 336 24 0 0 chr11 90920627 90920668 -59862885 + (TG)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chr11 90920890 90920911 -59862642 + (A)n Simple_repeat Simple_repeat 1 21 0 216 67 0 0 chr11 90921505 90921535 -59862018 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 32 0 0 0 chr11 90921641 90921673 -59861880 + AT_rich Low_complexity Low_complexity 1 32 0 1510 241 58 29 chr11 90921717 90922429 -59861124 + L1MCa LINE L1 2005 2773 -3653 526 189 150 26 chr11 90922441 90922594 -59860959 + L1MCa LINE L1 2909 3080 -3346 202 234 0 16 chr11 90923297 90923361 -59860192 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 2198 92 0 0 chr11 90923364 90923684 -59859869 + AluY SINE Alu 1 320 0 224 250 275 12 chr11 90924042 90924122 -59859431 - L2 LINE L2 -12 3260 3160 405 206 0 37 chr11 90924672 90924808 -59858745 + C-rich Low_complexity Low_complexity 2 132 0 22 0 0 0 chr11 90925497 90925519 -59858034 + AT_rich Low_complexity Low_complexity 1 22 0 2442 84 7 0 chr11 90925799 90926109 -59857444 - AluSp SINE Alu -1 312 1 360 287 35 0 chr11 90926285 90926372 -59857181 - L2 LINE L2 -17 3255 3166 437 320 23 17 chr11 90926747 90926919 -59856634 - MIR SINE MIR -84 178 6 413 317 90 0 chr11 90927269 90927436 -59856117 + MIR3 SINE MIR 2 183 -25 235 309 103 0 chr11 90928073 90928141 -59855412 + L2 LINE L2 3185 3259 -13 240 278 120 37 chr11 90928698 90928806 -59854747 - L2 LINE L2 -2 3270 3154 211 216 189 27 chr11 90928853 90928927 -59854626 + MIR SINE MIR 105 190 -72 498 248 87 13 chr11 90930204 90930353 -59853200 + MIR SINE MIR 37 196 -66 831 252 54 47 chr11 90930452 90930710 -59852843 - MIR SINE MIR -2 260 1 223 307 15 19 chr11 90930838 90930966 -59852587 + MIR SINE MIR 41 222 -40 1646 186 4 11 chr11 90931125 90931405 -59852148 - AluJb SINE Alu -14 298 21 40671 33 22 2 chr11 90931503 90937512 -59846041 + L1PA2 LINE L1 22 6154 -1 23 54 0 0 chr11 90937512 90937549 -59846004 + AT_rich Low_complexity Low_complexity 1 37 0 273 300 77 8 chr11 90938101 90938231 -59845322 + MLT1I LTR MaLR 232 370 -39 189 222 15 148 chr11 90938456 90938591 -59844962 + L3 LINE CR1 1453 1569 -8 306 252 168 15 chr11 90939114 90939245 -59844308 - MIR SINE MIR -17 245 95 576 359 74 27 chr11 90940111 90940476 -59843077 + L2 LINE L2 2362 2743 -571 182 225 25 0 chr11 90940911 90940951 -59842602 + MIR SINE MIR 35 75 -133 221 317 148 0 chr11 90941099 90941200 -59842353 + L2 LINE L2 3152 3267 -5 1049 144 20 80 chr11 90941259 90941460 -59842093 + AluJb SINE Alu 1 189 -123 767 195 7 19 chr11 90941494 90941676 -59841877 + FRAM SINE Alu 1 166 0 356 339 39 8 chr11 90941758 90941885 -59841668 - MIR SINE MIR -78 184 54 251 246 211 41 chr11 90942295 90942466 -59841087 + MIR SINE MIR 1 200 -62 221 370 29 72 chr11 90942779 90943265 -59840288 + L2 LINE L2 2508 2972 -342 198 273 0 91 chr11 90943886 90943963 -59839590 - L2 LINE L2 -17 3255 3186 312 27 0 0 chr11 90944087 90944124 -59839429 + (TG)n Simple_repeat Simple_repeat 1 37 0 309 267 111 22 chr11 90944662 90944797 -59838756 + MER117 DNA MER1_type 1 147 -50 304 152 0 0 chr11 90944959 90945005 -59838548 + L2 LINE L2 3227 3272 0 1832 132 28 56 chr11 90945363 90945682 -59837871 - AluJb SINE Alu -2 310 1 220 329 117 56 chr11 90946421 90946652 -59836901 + MIR SINE MIR 9 253 -9 435 106 0 0 chr11 90946878 90946944 -59836609 + (TG)n Simple_repeat Simple_repeat 1 66 0 21 36 0 0 chr11 90947019 90947047 -59836506 + AT_rich Low_complexity Low_complexity 1 28 0 704 301 108 10 chr11 90947200 90947722 -59835831 - L1ME3A LINE L1 -317 5853 5266 246 62 0 0 chr11 90947973 90948005 -59835548 + (CTAAA)n Simple_repeat Simple_repeat 4 35 0 1854 132 10 7 chr11 90948383 90948687 -59834866 + L1MC1 LINE L1 6022 6326 -7 1313 188 188 17 chr11 90948729 90948864 -59834689 + LTR54B LTR ERV1 1 112 -386 282 29 0 0 chr11 90948864 90948899 -59834654 + (GA)n Simple_repeat Simple_repeat 2 36 0 1313 188 188 17 chr11 90948899 90949183 -59834370 + LTR54B LTR ERV1 112 492 -6 631 273 26 16 chr11 90949350 90949544 -59834009 - MIR SINE MIR -5 257 62 2498 133 12 2 chr11 90950490 90950505 -59833048 - MER57A LTR ERV1 0 403 390 2582 55 0 0 chr11 90950505 90950815 -59832738 + AluY SINE Alu 1 310 -1 2498 133 12 2 chr11 90950815 90951198 -59832355 - MER57A LTR ERV1 -13 390 1 248 211 70 164 chr11 90951274 90951402 -59832151 + MLT1J LTR MaLR 1 116 -395 1861 235 34 30 chr11 90951402 90951959 -59831594 + L1ME3 LINE L1 5560 6118 -44 1095 119 57 19 chr11 90951967 90952159 -59831394 - MER47A DNA MER2_type 0 366 167 903 151 146 38 chr11 90952159 90952371 -59831182 - MER46A DNA MER2_type -1 235 1 878 182 0 0 chr11 90952371 90952530 -59831023 - MER47A DNA MER2_type -198 168 10 222 37 0 0 chr11 90952567 90952594 -59830959 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 258 32 0 0 chr11 90952593 90952624 -59830929 + (GA)n Simple_repeat Simple_repeat 2 32 0 248 366 33 13 chr11 90954053 90954206 -59829347 - MIR3 SINE MIR -7 201 46 335 256 11 0 chr11 90954446 90954536 -59829017 - MIR SINE MIR -10 252 162 189 0 0 0 chr11 90954536 90954557 -59828996 + (TAA)n Simple_repeat Simple_repeat 1 21 0 566 311 24 19 chr11 90954557 90954769 -59828784 - MIR SINE MIR -1 261 49 207 195 24 0 chr11 90955138 90955179 -59828374 + GA-rich Low_complexity Low_complexity 3 44 0 501 290 101 14 chr11 90956084 90956291 -59827262 + MIR SINE MIR 36 260 -2 376 299 43 0 chr11 90956289 90956406 -59827147 - MIR SINE MIR -101 161 40 * 741 200 24 24 chr11 90957668 90957838 -59825715 - MER5B DNA MER1_type -1 177 8 239 293 122 41 chr11 90958042 90958165 -59825388 + L2 LINE L2 3140 3272 0 1771 174 0 3 chr11 90958300 90958598 -59824955 + AluJb SINE Alu 1 297 -15 183 277 64 53 chr11 90959141 90959235 -59824318 - MIR SINE MIR -32 230 136 1541 213 103 26 chr11 90959244 90959322 -59824231 - L1ME3A LINE L1 -180 5990 5919 2008 191 177 17 chr11 90959322 90959860 -59823693 + MLT1E2 LTR MaLR 1 624 -2 1541 213 103 26 chr11 90959860 90960275 -59823278 - L1ME3A LINE L1 -251 5919 5459 2427 254 76 64 chr11 90960281 90961605 -59821948 - L1ME3A LINE L1 -753 5393 4038 1637 160 57 0 chr11 90961605 90961868 -59821685 + AluSx SINE Alu 13 290 -22 2427 254 76 64 chr11 90961868 90962326 -59821227 - L1ME3A LINE L1 -2108 4038 3587 481 276 54 43 chr11 90962352 90962537 -59821016 - MIR SINE MIR -75 187 1 420 295 60 6 chr11 90963279 90963445 -59820108 + MIR SINE MIR 16 190 -72 301 176 27 0 chr11 90964139 90964213 -59819340 + L1MA10 LINE L1 6256 6331 -3 2662 10 0 0 chr11 90964469 90964757 -59818796 + AluYa5 SINE Alu 22 309 -2 428 151 124 167 chr11 90965684 90965793 -59817760 + MER45A DNA AcHobo 1 100 -1481 1899 120 36 0 chr11 90965793 90965945 -59817608 - AluSx SINE Alu -28 284 116 183 42 0 0 chr11 90965945 90965969 -59817584 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1899 120 36 0 chr11 90965969 90966090 -59817463 - AluSx SINE Alu -196 116 1 428 151 124 167 chr11 90966090 90966166 -59817387 + MER45A DNA AcHobo 100 178 0 2097 230 24 34 chr11 90966386 90967099 -59816454 - L1 LINE L1 -3114 3032 2327 325 318 163 0 chr11 90967270 90967399 -59816154 - L2 LINE L2 0 3272 3123 240 356 34 0 chr11 90967928 90968046 -59815507 + L2 LINE L2 3151 3272 0 238 200 117 0 chr11 90968525 90968585 -59814968 - MIR SINE MIR -78 184 118 230 218 0 18 chr11 90969848 90969903 -59813650 - L2 LINE L2 0 3272 3219 392 282 24 32 chr11 90970207 90970331 -59813222 + L2 LINE L2 3150 3272 0 210 200 173 0 chr11 90970960 90971035 -59812518 - MIR SINE MIR -4 258 171 448 224 75 22 chr11 90971055 90971072 -59812481 - MIR SINE MIR -66 196 181 7437 33 0 0 chr11 90971072 90972121 -59811432 - L1PA4 LINE L1 -3 6152 5110 448 224 75 22 chr11 90972121 90972237 -59811316 - MIR SINE MIR -81 181 56 613 296 24 0 chr11 90972334 90972503 -59811050 + MIR SINE MIR 77 249 -13 511 320 53 0 chr11 90972684 90972909 -59810644 - MER112 DNA MER1_type -17 243 7 442 363 118 19 chr11 90972912 90973174 -59810379 + L2 LINE L2 2985 3272 0 501 253 104 33 chr11 90974552 90974734 -59808819 + MIR3 SINE MIR 3 197 -11 180 0 0 0 chr11 90975030 90975050 -59808503 + (T)n Simple_repeat Simple_repeat 1 20 0 1183 197 158 10 chr11 90977460 90977606 -59805947 + L1MD2 LINE L1 5989 6112 -247 333 0 0 0 chr11 90977606 90977643 -59805910 + (CA)n Simple_repeat Simple_repeat 2 38 0 1183 197 158 10 chr11 90977643 90977806 -59805747 + L1MD2 LINE L1 6112 6344 -15 180 135 0 0 chr11 90977807 90977844 -59805709 + (A)n Simple_repeat Simple_repeat 1 37 0 907 200 0 0 chr11 90978955 90979100 -59804453 + FRAM SINE Alu 1 145 -31 208 313 60 0 chr11 90979194 90979261 -59804292 - MIR SINE MIR -6 256 186 277 238 177 48 chr11 90979614 90979761 -59803792 - L1MC/D LINE L1 -2029 5779 5614 312 281 177 12 chr11 90980063 90980227 -59803326 + L2 LINE L2 3122 3312 -1 565 256 93 0 chr11 90981242 90981414 -59802139 - MIR SINE MIR -11 251 64 524 264 41 45 chr11 90982145 90982360 -59801193 + MIR SINE MIR 16 228 -34 890 79 50 0 chr11 90983185 90983325 -59800228 - L1PA4 LINE L1 -343 5812 5666 * 2796 29 0 0 chr11 90983287 90983631 -59799922 + L1PA4 LINE L1 5812 6155 0 290 325 152 7 chr11 90983654 90983805 -59799748 + MIR SINE MIR 20 192 -70 353 314 51 0 chr11 90984400 90984518 -59799035 - L2 LINE L2 -1 3312 3189 330 318 96 32 chr11 90984757 90984977 -59798576 + MIR SINE MIR 16 249 -13 387 41 0 0 chr11 90985712 90985723 -59797830 + (TG)n Simple_repeat Simple_repeat 1 60 0 387 41 0 0 chr11 90985723 90985772 -59797781 + (TG)n Simple_repeat Simple_repeat 1 49 0 325 259 71 12 chr11 90985984 90986069 -59797484 + L2 LINE L2 3205 3294 -19 263 400 26 5 chr11 90986636 90986831 -59796722 + MIR SINE MIR 52 250 -12 222 364 8 42 chr11 90986861 90986979 -59796574 + MIR SINE MIR 117 230 -32 281 276 138 11 chr11 90987605 90987692 -59795861 - MIR SINE MIR -79 129 32 258 301 164 40 chr11 90988873 90989099 -59794454 - L2 LINE L2 -666 2648 2395 279 227 0 0 chr11 90990217 90990283 -59793270 + GA-rich Low_complexity Low_complexity 3 68 0 325 195 9 142 chr11 90990568 90990681 -59792872 - L3 LINE CR1 -426 1151 1054 996 280 132 55 chr11 90990685 90991663 -59791890 - HAL1 LINE L1 -1430 1077 25 223 333 73 0 chr11 90991687 90991810 -59791743 - L3 LINE CR1 -753 824 693 385 233 10 13 chr11 90992634 90992742 -59790811 + L1MD2 LINE L1 6209 7779 -29 427 224 48 64 chr11 90993551 90993676 -59789877 + LTR33A LTR ERVL 79 201 -322 1976 216 69 11 chr11 90993995 90994472 -59789081 + MLT1D LTR MaLR 1 505 0 441 244 68 54 chr11 90994848 90995069 -59788484 + L2 LINE L2 3088 3311 -2 226 234 243 18 chr11 90995127 90995238 -59788315 + MIR SINE MIR 72 207 -55 203 231 0 0 chr11 90995478 90995517 -59788036 + GA-rich Low_complexity Low_complexity 1 39 0 2191 117 0 3 chr11 90996230 90996530 -59787023 - AluSx SINE Alu -13 299 1 449 233 100 60 chr11 90996761 90996945 -59786608 - MIR SINE MIR -46 216 26 2063 129 10 0 chr11 90997585 90997879 -59785674 - AluSx SINE Alu -15 297 1 293 217 0 58 chr11 90999053 90999122 -59784431 + L2 LINE L2 3248 3312 -1 219 258 53 76 chr11 91000809 91000941 -59782612 + L2 LINE L2 2953 3081 -191 274 250 0 0 chr11 91001209 91001261 -59782292 + MIR SINE MIR 27 78 -130 2593 46 0 7 chr11 91001394 91001699 -59781854 - AluY SINE Alu -8 303 1 407 311 140 36 chr11 91002675 91002897 -59780656 - MIR SINE MIR -16 246 2 666 196 95 0 chr11 91002998 91003146 -59780407 - MIR SINE MIR -1 261 100 192 97 0 0 chr11 91003159 91003190 -59780363 + (GA)n Simple_repeat Simple_repeat 2 32 0 296 283 239 7 chr11 91003476 91003614 -59779939 - MIR SINE MIR -88 174 5 218 114 0 23 chr11 91003653 91003697 -59779856 + (TATTG)n Simple_repeat Simple_repeat 5 47 0 449 363 42 0 chr11 91004155 91004395 -59779158 + Charlie8 DNA MER1_type 2 251 -2166 200 310 0 0 chr11 91004674 91004732 -59778821 + CT-rich Low_complexity Low_complexity 1 58 0 285 352 16 16 chr11 91005023 91005148 -59778405 + MIR SINE MIR 29 153 -109 252 281 235 36 chr11 91005319 91005515 -59778038 - MIR SINE MIR -6 256 22 272 294 130 0 chr11 91006423 91006515 -59777038 + L2 LINE L2 3182 3285 -28 390 274 79 34 chr11 91007013 91007176 -59776377 - MIR SINE MIR -69 139 7 245 238 0 107 chr11 91007380 91007464 -59776089 + L2 LINE L2 3198 3272 0 428 310 96 29 chr11 91007788 91008008 -59775545 + MIR SINE MIR 19 250 -12 274 284 45 0 chr11 91008470 91008537 -59775016 + L2 LINE L2 3198 3267 -5 296 248 101 70 chr11 91008752 91008881 -59774672 + L2 LINE L2 3163 3295 -18 333 399 54 0 chr11 91009147 91009315 -59774238 - L2 LINE L2 -1 3271 3095 289 332 107 43 chr11 91009909 91010135 -59773418 - L3 LINE CR1 -144 1433 1176 2106 130 9 32 chr11 91010135 91010480 -59773073 + MER1B DNA MER1_type 1 337 0 289 332 107 43 chr11 91010480 91010599 -59772954 - L3 LINE CR1 -401 1176 1066 313 285 62 28 chr11 91010604 91010730 -59772823 - MIR SINE MIR -73 135 8 2507 52 10 0 chr11 91011557 91011862 -59771691 + AluY SINE Alu 1 308 -3 216 143 0 0 chr11 91011929 91011971 -59771582 + (A)n Simple_repeat Simple_repeat 1 42 0 191 379 0 0 chr11 91012242 91012308 -59771245 + L2 LINE L2 2905 2970 -302 306 303 30 0 chr11 91012468 91012567 -59770986 - L1MC4 LINE L1 -1334 6708 6607 * 316 322 0 0 chr11 91012485 91012575 -59770978 + L1MC4 LINE L1 6614 6703 -1339 310 294 24 0 chr11 91012613 91012698 -59770855 + L1MC4 LINE L1 6614 6700 -1342 29 0 0 0 chr11 91012711 91012740 -59770813 + AT_rich Low_complexity Low_complexity 1 29 0 180 314 162 9 chr11 91012742 91012847 -59770706 + L2 LINE L2 3151 3271 -1 360 262 0 78 chr11 91012962 91013065 -59770488 - L2 LINE L2 -19 3253 3159 221 274 14 0 chr11 91013265 91013338 -59770215 + (TA)n Simple_repeat Simple_repeat 2 75 0 254 315 0 14 chr11 91013630 91013703 -59769850 + L2 LINE L2 3242 3313 0 219 262 33 0 chr11 91014181 91014242 -59769311 - L2 LINE L2 -10 3262 3200 25 0 0 0 chr11 91014913 91014938 -59768615 + AT_rich Low_complexity Low_complexity 1 25 0 522 228 99 20 chr11 91015526 91015728 -59767825 - L1MC5 LINE L1 -141 7820 7603 235 87 65 0 chr11 91015986 91016032 -59767521 + CT-rich Low_complexity Low_complexity 2 50 0 2125 97 40 0 chr11 91016038 91016337 -59767216 - AluSp SINE Alu -2 311 1 253 324 95 9 chr11 91016536 91016641 -59766912 - L2 LINE L2 -3 3269 3156 2025 95 11 21 chr11 91016641 91016963 -59766590 + AluSg SINE Alu 1 319 0 187 229 125 0 chr11 91017500 91017548 -59766005 + L2 LINE L2 3188 3241 -31 245 185 141 65 chr11 91017621 91017713 -59765840 + MIR SINE MIR 164 262 0 274 310 46 65 chr11 91020061 91020322 -59763231 + MLT1K LTR MaLR 290 545 -43 201 236 56 130 chr11 91020377 91020538 -59763015 - MIR SINE MIR -13 249 101 238 385 73 0 chr11 91020687 91020796 -59762757 + L2 LINE L2 3137 3253 -19 201 247 101 22 chr11 91021321 91021410 -59762143 - MIR SINE MIR -66 196 101 354 354 79 50 chr11 91022252 91022594 -59760959 - MER115 DNA AcHobo -237 456 105 548 279 48 34 chr11 91022957 91023165 -59760388 + MIR SINE MIR 28 238 -24 252 319 147 25 chr11 91023560 91023723 -59759830 - MIR SINE MIR 0 262 80 528 270 40 17 chr11 91026693 91026867 -59756686 - MIR3 SINE MIR -28 180 3 873 309 24 0 chr11 91027050 91027296 -59756257 - MIR SINE MIR 0 262 11 497 295 44 29 chr11 91028876 91029107 -59754446 - MIR SINE MIR -8 254 25 2726 282 57 19 chr11 91029148 91030082 -59753471 + L2 LINE L2 1802 2770 -544 571 239 24 160 chr11 91030070 91030446 -59753107 + L2 LINE L2 2982 3306 -7 * 1886 190 81 36 chr11 91030681 91031128 -59752425 + MLT1C LTR MaLR 1 467 0 546 240 23 31 chr11 91031138 91031267 -59752286 - MIR SINE MIR -111 151 24 998 169 0 89 chr11 91031653 91031890 -59751663 + AluJo SINE Alu 86 301 -11 194 282 113 0 chr11 91032208 91032279 -59751274 + MIR SINE MIR 178 256 -6 374 310 52 129 chr11 91032788 91033169 -59750384 - L2 LINE L2 0 3272 2921 362 170 53 53 chr11 91033372 91033466 -59750087 + MIR SINE MIR 86 179 -83 323 128 79 0 chr11 91033758 91033922 -59749631 + (TA)n Simple_repeat Simple_repeat 1 177 0 34 24 0 0 chr11 91034246 91034287 -59749266 + AT_rich Low_complexity Low_complexity 1 41 0 236 247 106 12 chr11 91034399 91034484 -59749069 - MIR SINE MIR 0 262 170 1351 224 17 35 chr11 91034554 91034898 -59748655 + MER58B DNA MER1_type 3 340 -1 390 306 72 28 chr11 91035810 91035990 -59747563 - MIR SINE MIR -50 212 25 291 320 10 0 chr11 91036156 91036253 -59747300 + MIR SINE MIR 94 191 -71 1258 138 29 29 chr11 91036265 91036505 -59747048 + L1MB8 LINE L1 5914 6153 -25 281 254 15 0 chr11 91036511 91036578 -59746975 + MIR SINE MIR 194 261 -1 857 254 112 43 chr11 91036589 91037010 -59746543 + MLT1J2 LTR MaLR 1 450 0 484 242 70 37 chr11 91037876 91038055 -59745498 - MIR SINE MIR -50 212 23 293 326 70 0 chr11 91039076 91039162 -59744391 - L2 LINE L2 -26 3246 3155 2204 104 13 16 chr11 91039321 91039628 -59743925 + AluSx SINE Alu 1 306 -6 587 293 27 5 chr11 91039886 91040074 -59743479 - L2 LINE L2 -556 2758 2567 2391 40 0 0 chr11 91040074 91040350 -59743203 - AluY SINE Alu -35 276 1 188 316 138 26 chr11 91041111 91041263 -59742290 + MIR3 SINE MIR 35 203 -5 2301 80 0 3 chr11 91042280 91042567 -59740986 - AluSc SINE Alu -15 294 9 776 103 0 9 chr11 91044382 91044498 -59739055 + FLAM_C SINE Alu 2 116 -17 323 265 43 55 chr11 91044670 91044923 -59738630 - L1MC4a LINE L1 -1850 5958 5709 30 0 0 0 chr11 91045287 91045317 -59738236 + AT_rich Low_complexity Low_complexity 1 30 0 314 278 44 49 chr11 91045329 91045534 -59738019 - L1MC4a LINE L1 -1911 5897 5694 378 310 76 16 chr11 91045538 91045841 -59737712 - L1MC4a LINE L1 -2170 5638 5318 217 298 60 24 chr11 91046193 91046277 -59737276 - L3 LINE CR1 -362 1215 1129 387 319 43 21 chr11 91046300 91046441 -59737112 + MIR SINE MIR 1 144 -118 198 0 0 0 chr11 91046443 91046465 -59737088 + (CCTA)n Simple_repeat Simple_repeat 1 22 0 302 318 97 17 chr11 91046630 91046806 -59736747 - MIR3 SINE MIR -7 201 12 216 0 0 0 chr11 91047168 91047192 -59736361 + (T)n Simple_repeat Simple_repeat 1 24 0 401 290 188 18 chr11 91047333 91047557 -59735996 - MIR SINE MIR 0 262 1 2230 89 3 10 chr11 91047853 91048146 -59735407 + AluY SINE Alu 1 291 -20 241 163 0 0 chr11 91048146 91048195 -59735358 + (TA)n Simple_repeat Simple_repeat 2 50 0 290 352 0 19 chr11 91048643 91048748 -59734805 + L2 LINE L2 2922 3024 -248 202 188 0 0 chr11 91048867 91048899 -59734654 + (TGAG)n Simple_repeat Simple_repeat 4 35 0 412 288 86 97 chr11 91048909 91049176 -59734377 - L3 LINE CR1 -81 1496 1233 245 269 85 23 chr11 91049190 91049320 -59734233 - L3 LINE CR1 -56 1521 1384 273 57 0 0 chr11 91049941 91049976 -59733577 + (GAA)n Simple_repeat Simple_repeat 1 35 0 958 280 17 4 chr11 91049993 91050232 -59733321 - MIR SINE MIR -1 261 20 2328 93 3 3 chr11 91050235 91050546 -59733007 - AluY SINE Alu 0 311 1 637 313 39 22 chr11 91050894 91051124 -59732429 + MIR SINE MIR 20 253 -9 214 268 28 14 chr11 91051664 91051735 -59731818 + MIR3 SINE MIR 133 204 -4 367 337 52 12 chr11 91052402 91052574 -59730979 - L2 LINE L2 -880 2434 2256 338 292 23 0 chr11 91052650 91052780 -59730773 + MIR SINE MIR 127 259 -3 296 340 0 0 chr11 91052798 91052960 -59730593 + A-rich Low_complexity Low_complexity 1 162 0 192 135 0 0 chr11 91053003 91053040 -59730513 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 991 309 131 30 chr11 91053665 91054625 -59728928 + L2 LINE L2 2243 3313 0 229 255 0 0 chr11 91054668 91054715 -59728838 - L2 LINE L2 -4 3268 3222 205 200 0 0 chr11 91054775 91054810 -59728743 + MER5A DNA MER1_type 91 125 -64 400 212 24 0 chr11 91054814 91054899 -59728654 - AluJ/FRAM SINE Alu -11 301 215 246 227 71 71 chr11 91055364 91055518 -59728035 + L1ME LINE L1 5750 5903 -218 368 264 0 0 chr11 91055893 91055980 -59727573 - L2 LINE L2 0 3272 3186 1888 150 0 19 chr11 91057159 91057466 -59726087 - AluSx SINE Alu -11 301 1 610 265 111 31 chr11 91057539 91057890 -59725663 - L1MEd LINE L1 -5733 386 8 216 336 74 63 chr11 91058453 91058724 -59724829 - L2 LINE L2 -349 2965 2692 2620 49 0 0 chr11 91058883 91059191 -59724362 - AluY SINE Alu -3 308 1 188 316 138 26 chr11 91059952 91060104 -59723449 + MIR3 SINE MIR 35 203 -5 2292 80 0 3 chr11 91061121 91061407 -59722146 - AluSc SINE Alu -16 293 9 776 103 0 9 chr11 91063222 91063338 -59720215 + FLAM_C SINE Alu 2 116 -17 323 265 43 55 chr11 91063510 91063763 -59719790 - L1MC4a LINE L1 -1850 5958 5709 30 0 0 0 chr11 91064127 91064157 -59719396 + AT_rich Low_complexity Low_complexity 1 30 0 314 278 44 49 chr11 91064169 91064374 -59719179 - L1MC4a LINE L1 -1911 5897 5694 378 310 76 16 chr11 91064378 91064681 -59718872 - L1MC4a LINE L1 -2170 5638 5318 217 298 60 24 chr11 91065033 91065117 -59718436 - L3 LINE CR1 -362 1215 1129 387 319 43 21 chr11 91065140 91065281 -59718272 + MIR SINE MIR 1 144 -118 198 0 0 0 chr11 91065283 91065305 -59718248 + (CCTA)n Simple_repeat Simple_repeat 1 22 0 302 318 97 17 chr11 91065470 91065646 -59717907 - MIR3 SINE MIR -7 201 12 225 0 0 0 chr11 91066008 91066033 -59717520 + (T)n Simple_repeat Simple_repeat 1 25 0 401 290 188 18 chr11 91066174 91066398 -59717155 - MIR SINE MIR 0 262 1 2230 89 3 10 chr11 91066694 91066987 -59716566 + AluY SINE Alu 1 291 -20 241 163 0 0 chr11 91066987 91067036 -59716517 + (TA)n Simple_repeat Simple_repeat 1 49 0 290 352 0 19 chr11 91067484 91067589 -59715964 + L2 LINE L2 2922 3024 -248 202 188 0 0 chr11 91067708 91067740 -59715813 + (TGAG)n Simple_repeat Simple_repeat 4 35 0 412 288 86 97 chr11 91067750 91068017 -59715536 - L3 LINE CR1 -81 1496 1233 245 269 85 23 chr11 91068031 91068161 -59715392 - L3 LINE CR1 -56 1521 1384 273 57 0 0 chr11 91068782 91068817 -59714736 + (GAA)n Simple_repeat Simple_repeat 1 35 0 958 280 17 4 chr11 91068834 91069073 -59714480 - MIR SINE MIR -1 261 20 2328 93 3 3 chr11 91069076 91069387 -59714166 - AluY SINE Alu 0 311 1 637 313 39 22 chr11 91069735 91069965 -59713588 + MIR SINE MIR 20 253 -9 214 268 28 14 chr11 91070505 91070576 -59712977 + MIR3 SINE MIR 133 204 -4 367 337 52 12 chr11 91071243 91071415 -59712138 - L2 LINE L2 -880 2434 2256 649 196 23 0 chr11 91071491 91071624 -59711929 + MIR SINE MIR 127 262 0 486 264 101 13 chr11 91071725 91071884 -59711669 + MIR3 SINE MIR 13 185 -23 991 309 131 30 chr11 91072488 91073448 -59710105 + L2 LINE L2 2243 3313 0 229 255 0 0 chr11 91073491 91073538 -59710015 - L2 LINE L2 -4 3268 3222 205 200 0 0 chr11 91073598 91073633 -59709920 + MER5A DNA MER1_type 91 125 -64 400 212 24 0 chr11 91073637 91073722 -59709831 - AluJ/FRAM SINE Alu -11 301 215 246 227 71 71 chr11 91074187 91074341 -59709212 + L1ME LINE L1 5750 5903 -218 368 264 0 0 chr11 91074715 91074802 -59708751 - L2 LINE L2 0 3272 3186 803 256 124 65 chr11 91075994 91076149 -59707404 - L1MC4 LINE L1 -2 8040 7896 309 26 0 0 chr11 91076149 91076187 -59707366 + (CA)n Simple_repeat Simple_repeat 2 39 0 803 256 124 65 chr11 91076187 91076965 -59706588 - L1MC4 LINE L1 -146 7896 7052 403 348 11 28 chr11 91077392 91077570 -59705983 - MIR3 SINE MIR -30 178 4 195 286 71 14 chr11 91077978 91078048 -59705505 + L2 LINE L2 3194 3267 -5 194 219 96 82 chr11 91078170 91078243 -59705310 + L2 LINE L2 3149 3222 -50 182 212 0 0 chr11 91079107 91079140 -59704413 + MIR SINE MIR 217 249 -13 256 211 233 11 chr11 91079335 91079425 -59704128 - MIR SINE MIR -75 187 78 223 196 0 22 chr11 91081913 91081959 -59701594 + (TATG)n Simple_repeat Simple_repeat 2 46 0 453 120 67 0 chr11 91082937 91083012 -59700541 + MER116 DNA Mariner 1 80 0 215 238 0 0 chr11 91083946 91083988 -59699565 - MIR SINE MIR -5 257 216 215 216 0 0 chr11 91083952 91083989 -59699564 - L2 LINE L2 -17 3255 3219 624 322 47 5 chr11 91084538 91084752 -59698801 - MIR SINE MIR -20 242 20 243 232 21 95 chr11 91084966 91085061 -59698492 - L3 LINE CR1 -53 1524 1437 180 245 38 19 chr11 91085074 91085127 -59698426 + L2 LINE L2 3198 3251 -21 188 298 0 0 chr11 91085128 91085175 -59698378 - MIR SINE MIR -75 133 87 207 139 0 0 chr11 91085325 91085361 -59698192 + (CAA)n Simple_repeat Simple_repeat 1 36 0 650 276 75 0 chr11 91085362 91085561 -59697992 - MIR SINE MIR 0 262 49 427 278 226 31 chr11 91087594 91087921 -59695632 - L3 LINE CR1 -351 1226 836 290 227 50 67 chr11 91088019 91088138 -59695415 + MIR SINE MIR 88 204 -58 1376 226 23 13 chr11 91089160 91089465 -59694088 + AluJo SINE Alu 1 308 -4 280 237 26 26 chr11 91089574 91089650 -59693903 - MIR3 SINE MIR -4 204 129 2338 122 0 0 chr11 91090755 91091067 -59692486 + AluSx SINE Alu 1 312 0 180 0 0 0 chr11 91091509 91091529 -59692024 + (TAA)n Simple_repeat Simple_repeat 2 21 0 277 313 139 0 chr11 91092597 91092712 -59690841 - L2 LINE L2 0 3272 3142 247 319 0 0 chr11 91093194 91093266 -59690287 - L2 LINE L2 -21 3292 3221 334 234 284 0 chr11 91093376 91093517 -59690036 + L2 LINE L2 1626 1806 -1508 270 331 141 8 chr11 91093630 91093751 -59689802 + MIR SINE MIR 20 156 -106 322 320 0 24 chr11 91094270 91094395 -59689158 + LTR67 LTR ERVL 425 546 -11 181 310 10 60 chr11 91094534 91094634 -59688919 + MIR SINE MIR 118 212 -50 312 27 0 0 chr11 91095212 91095249 -59688304 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 369 336 0 19 chr11 91095535 91095642 -59687911 + MIR SINE MIR 17 121 -87 251 284 60 114 chr11 91095798 91095999 -59687554 + L2 LINE L2 3031 3220 -52 310 247 71 0 chr11 91096598 91096683 -59686870 - L1MCa LINE L1 -4330 2096 2006 * 315 179 0 0 chr11 91096678 91096734 -59686819 - L1MC4 LINE L1 -1339 6703 6648 2426 100 3 0 chr11 91096737 91097046 -59686507 - AluSp SINE Alu -3 310 1 208 364 51 40 chr11 91097516 91097692 -59685861 - L2 LINE L2 -427 2887 2710 1073 150 0 0 chr11 91099801 91099961 -59683592 + AluSg/x SINE Alu 126 285 -27 258 176 0 0 chr11 91100426 91100477 -59683076 + (TA)n Simple_repeat Simple_repeat 2 52 0 192 156 0 0 chr11 91100477 91100509 -59683044 + MIR SINE MIR 216 247 -15 2281 104 7 0 chr11 91100763 91101061 -59682492 - AluSx SINE Alu -12 300 1 198 0 0 0 chr11 91101297 91101319 -59682234 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2344 52 0 0 chr11 91101319 91101609 -59681944 - L1PA5 LINE L1 -8 6146 5857 228 240 147 0 chr11 91102032 91102107 -59681446 + MIR SINE MIR 110 195 -67 355 276 102 69 chr11 91102243 91102483 -59681070 + MIR SINE MIR 6 261 -1 417 340 28 35 chr11 91102624 91102765 -59680788 - L2 LINE L2 -5 3267 3128 186 43 0 0 chr11 91103072 91103095 -59680458 + (TG)n Simple_repeat Simple_repeat 2 24 0 294 29 0 0 chr11 91103096 91103131 -59680422 + (GA)n Simple_repeat Simple_repeat 2 36 0 249 316 32 0 chr11 91103459 91103554 -59679999 + GA-rich Low_complexity Low_complexity 3 100 0 184 248 257 35 chr11 91103588 91103701 -59679852 + MIR SINE MIR 54 191 -71 883 177 94 61 chr11 91103702 91103979 -59679574 + L1MA10 LINE L1 6036 6321 -13 1824 168 18 0 chr11 91104000 91104327 -59679226 + L1PA16 LINE L1 5825 6157 -9 25 51 0 0 chr11 91104540 91104579 -59678974 + AT_rich Low_complexity Low_complexity 1 39 0 2162 133 0 9 chr11 91104719 91105034 -59678519 + AluSq SINE Alu 1 312 -1 1213 252 76 57 chr11 91106711 91107183 -59676370 - L2 LINE L2 0 3313 2833 1035 220 58 0 chr11 91107184 91107425 -59676128 - MLT1E2 LTR MaLR 0 626 372 204 266 0 31 chr11 91107465 91107529 -59676024 + (CA)n Simple_repeat Simple_repeat 1 62 0 1049 245 22 48 chr11 91107532 91107926 -59675627 - MLT2B1 LTR ERVL -64 400 1 1061 214 131 46 chr11 91107926 91108277 -59675276 - MLT1E2 LTR MaLR -242 382 2 511 244 111 0 chr11 91108279 91108414 -59675139 - L2 LINE L2 -478 2836 2687 701 246 90 148 chr11 91108514 91109414 -59674139 - L1MDa LINE L1 -5589 951 104 188 151 189 19 chr11 91109460 91109513 -59674040 - L2 LINE L2 -745 2569 2508 195 305 0 0 chr11 91109659 91109718 -59673835 - MIR SINE MIR -32 230 172 302 255 41 0 chr11 91109802 91109900 -59673653 + L1MC4 LINE L1 7924 8025 -17 898 263 111 42 chr11 91110085 91110590 -59672963 + Charlie8 DNA MER1_type 1 540 -1877 279 299 13 0 chr11 91111851 91111928 -59671625 + L2 LINE L2 3195 3272 0 703 278 59 17 chr11 91112049 91112337 -59671216 - MER102b DNA MER1_type -41 300 1 187 293 0 0 chr11 91113374 91113415 -59670138 - L2 LINE L2 -13 3259 3219 1700 83 0 0 chr11 91113879 91114084 -59669469 + AluSc SINE Alu 2 206 -103 207 0 0 0 chr11 91114088 91114111 -59669442 + (A)n Simple_repeat Simple_repeat 1 23 0 2310 71 40 0 chr11 91114111 91114407 -59669146 + AluY SINE Alu 1 308 -3 216 336 74 63 chr11 91114566 91114837 -59668716 + L2 LINE L2 2692 2965 -349 610 265 111 31 chr11 91115400 91115751 -59667802 + L1MEd LINE L1 8 386 -5733 2146 129 0 19 chr11 91115824 91116135 -59667418 + AluSx SINE Alu 1 305 -7 384 344 130 5 chr11 91117301 91117516 -59666037 + MIR SINE MIR 11 252 -10 207 397 50 20 chr11 91117673 91117872 -59665681 - L2 LINE L2 -237 3035 2831 180 0 0 0 chr11 91118505 91118525 -59665028 + (A)n Simple_repeat Simple_repeat 1 20 0 255 255 103 83 chr11 91119124 91119269 -59664284 + MIR3 SINE MIR 44 191 -17 426 202 20 20 chr11 91119480 91119579 -59663974 + MER3 DNA MER1_type 33 131 -78 370 248 188 83 chr11 91119590 91119904 -59663649 + L2 LINE L2 2967 3313 0 227 316 131 32 chr11 91119927 91120256 -59663297 + L2 LINE L2 2220 2632 -682 637 295 21 16 chr11 91120635 91120828 -59662725 + MIR SINE MIR 13 206 -56 253 83 56 28 chr11 91120843 91120915 -59662638 + (TAAA)n Simple_repeat Simple_repeat 3 76 0 190 356 139 0 chr11 91120940 91121055 -59662498 - L2 LINE L2 -14 3299 3169 269 204 0 118 chr11 91121261 91121354 -59662199 - MER69 DNA AcHobo 0 2526 2445 224 287 61 52 chr11 91121547 91121662 -59661891 - L2 LINE L2 -45 3268 3153 342 0 0 0 chr11 91121688 91121726 -59661827 + (TG)n Simple_repeat Simple_repeat 2 39 0 2136 89 0 20 chr11 91121726 91122019 -59661534 - AluSc SINE Alu -20 289 3 195 367 92 0 chr11 91122303 91122412 -59661141 - L2 LINE L2 -1 3271 3153 1564 202 29 55 chr11 91122416 91122459 -59661094 + MLT1C LTR MaLR 3 46 -421 2506 57 0 3 chr11 91122459 91122759 -59660794 + AluY SINE Alu 1 299 -12 1564 202 29 55 chr11 91122759 91122907 -59660646 + MLT1C LTR MaLR 46 196 -271 2277 98 0 7 chr11 91122907 91123204 -59660349 + AluSq SINE Alu 1 295 -18 2238 100 0 7 chr11 91123204 91123503 -59660050 + AluSg1 SINE Alu 1 297 -12 1564 202 29 55 chr11 91123503 91123785 -59659768 + MLT1C LTR MaLR 194 466 -1 194 348 68 31 chr11 91124728 91124889 -59658664 + L2 LINE L2 2888 3054 -218 266 279 108 63 chr11 91124958 91125069 -59658484 - L2 LINE L2 -1 3312 3197 4220 205 62 34 chr11 91125241 91127260 -59656293 + L1MC1 LINE L1 3935 6025 -308 878 78 43 0 chr11 91127295 91127411 -59656142 + AluSg/x SINE Alu 172 292 -18 5590 132 18 7 chr11 91127413 91129046 -59654507 - L1PA13 LINE L1 -26 6137 4488 233 254 0 0 chr11 91129048 91129115 -59654438 + L1PA15-16 LINE L1 2334 2400 -4449 1651 186 0 25 chr11 91129117 91129440 -59654113 + L1MC1 LINE L1 6018 6332 -1 196 383 0 0 chr11 91129457 91129538 -59654015 + L2 LINE L2 3228 3308 -5 289 54 0 0 chr11 91130500 91130537 -59653016 + THE1B LTR MaLR 1 37 -327 972 136 52 37 chr11 91130538 91130729 -59652824 + THE1B LTR MaLR 171 364 0 11627 97 6 4 chr11 91130729 91132307 -59651246 + THE1B-int LTR MaLR 1 1580 0 1785 123 132 21 chr11 91132307 91132633 -59650920 + THE1B LTR MaLR 1 362 -2 6046 85 22 8 chr11 91132677 91133591 -59649962 + L1MA1 LINE L1 5376 6302 0 3579 114 15 19 chr11 91133606 91134220 -59649333 + L1MA3 LINE L1 5594 6204 -101 407 314 51 6 chr11 91135175 91135350 -59648203 - MIR SINE MIR -27 235 53 392 325 50 12 chr11 91135837 91135997 -59647556 + L2 LINE L2 3107 3272 0 225 320 105 39 chr11 91136797 91136950 -59646603 + MIR SINE MIR 35 197 -65 180 179 0 0 chr11 91137022 91137061 -59646492 + A-rich Low_complexity Low_complexity 1 39 0 246 235 132 66 chr11 91137636 91137772 -59645781 + L2 LINE L2 3107 3251 -62 283 295 143 0 chr11 91138806 91138911 -59644642 + MIR SINE MIR 99 218 -44 26 50 0 0 chr11 91138923 91138963 -59644590 + AT_rich Low_complexity Low_complexity 1 40 0 282 227 0 0 chr11 91140058 91140133 -59643420 + (TA)n Simple_repeat Simple_repeat 1 75 0 221 297 161 34 chr11 91140597 91140715 -59642838 - MIR3 SINE MIR -15 193 61 249 358 14 53 chr11 91141227 91141434 -59642119 - L3 LINE CR1 -7 1570 1372 2119 165 58 0 chr11 91141704 91142097 -59641456 - L1PB4 LINE L1 -7 6149 5734 225 250 94 31 chr11 91142468 91142532 -59641021 + MER91C DNA MER1_type 38 105 -35 2114 119 3 0 chr11 91143548 91143834 -59639719 + AluSg SINE Alu 1 287 -23 312 258 125 16 chr11 91143847 91143975 -59639578 - MIR SINE MIR -108 154 13 186 311 189 8 chr11 91144496 91144618 -59638935 - L3b LINE CR1 -82 1501 1358 475 284 91 47 chr11 91144696 91144858 -59638695 + MIR SINE MIR 21 197 -65 1934 155 39 30 chr11 91144858 91145219 -59638334 + THE1B LTR MaLR 1 364 0 475 284 91 47 chr11 91145219 91145288 -59638265 + MIR SINE MIR 197 262 0 378 273 37 166 chr11 91145325 91145651 -59637902 + L2 LINE L2 2988 3271 -1 688 169 22 13 chr11 91145710 91145933 -59637620 + GA-rich Low_complexity Low_complexity 1 224 0 200 59 29 0 chr11 91146083 91146117 -59637436 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1130 23 0 0 chr11 91146117 91146248 -59637305 - L1PA4 LINE L1 -16 6139 6009 23 54 0 0 chr11 91146398 91146435 -59637118 + AT_rich Low_complexity Low_complexity 1 37 0 531 265 147 5 chr11 91146844 91147048 -59636505 - MIR SINE MIR -1 261 29 223 226 19 0 chr11 91147237 91147290 -59636263 + (TA)n Simple_repeat Simple_repeat 1 54 0 727 246 114 18 chr11 91147603 91147831 -59635722 + MIR SINE MIR 8 257 -5 29 101 0 0 chr11 91147973 91148072 -59635481 + AT_rich Low_complexity Low_complexity 1 99 0 268 331 93 7 chr11 91148130 91148281 -59635272 - MIR SINE MIR -53 209 46 380 301 91 36 chr11 91148496 91148912 -59634641 - L1M3 LINE L1 -410 5758 5319 201 382 103 15 chr11 91149733 91149869 -59633684 + L2 LINE L2 3125 3272 0 219 293 49 12 chr11 91151141 91151223 -59632330 + L2 LINE L2 2311 2395 -919 280 276 0 0 chr11 91151284 91151342 -59632211 - L2 LINE L2 -11 3302 3245 207 278 0 0 chr11 91152358 91152412 -59631141 - L3 LINE CR1 -175 1402 1349 697 326 109 79 chr11 91152468 91152567 -59630986 - L3 LINE CR1 -368 1209 1114 440 129 0 59 chr11 91152567 91152652 -59630901 - MADE1 DNA Mariner 0 80 1 697 326 109 79 chr11 91152652 91153174 -59630379 - L3 LINE CR1 -463 1114 569 21 36 0 0 chr11 91153537 91153565 -59629988 + AT_rich Low_complexity Low_complexity 1 28 0 42238 38 0 3 chr11 91155515 91161686 -59621867 + L1PA3 LINE L1 4 6155 0 208 368 57 9 chr11 91161899 91162005 -59621548 + MIR SINE MIR 19 129 -79 190 337 96 45 chr11 91162081 91162259 -59621294 + MIR SINE MIR 20 206 -56 397 321 62 47 chr11 91162398 91162719 -59620834 - L2 LINE L2 -790 2524 2199 628 331 152 34 chr11 91164644 91165403 -59618150 + L2 LINE L2 2357 3211 -102 217 204 0 41 chr11 91165722 91165771 -59617782 - L2 LINE L2 0 3272 3226 205 186 0 23 chr11 91166018 91166061 -59617492 + GA-rich Low_complexity Low_complexity 2 43 0 2405 154 27 2 chr11 91166214 91166662 -59616891 - L1MA4 LINE L1 -11 6289 5831 2376 77 0 26 chr11 91166842 91167155 -59616398 - AluSp SINE Alu -8 305 1 230 307 83 91 chr11 91167349 91167613 -59615940 + L2 LINE L2 2966 3227 -45 23 33 0 0 chr11 91168288 91168318 -59615235 + AT_rich Low_complexity Low_complexity 1 30 0 577 245 51 9 chr11 91168328 91168544 -59615009 + L1MB8 LINE L1 5933 6157 -21 360 246 24 102 chr11 91169339 91169506 -59614047 - L2 LINE L2 0 3313 3160 502 301 110 18 chr11 91169523 91169742 -59613811 - MIR SINE MIR -13 249 11 262 290 11 0 chr11 91169891 91169984 -59613569 + (TA)n Simple_repeat Simple_repeat 1 94 0 2066 140 48 25 chr11 91171123 91171479 -59612074 + THE1B LTR MaLR 1 364 0 11420 99 11 0 chr11 91171479 91173042 -59610511 + THE1B-int LTR MaLR 1 1580 0 1988 143 48 31 chr11 91173042 91173400 -59610153 + THE1B LTR MaLR 1 364 0 401 256 116 8 chr11 91173443 91173572 -59609981 + MIR SINE MIR 10 145 -63 264 326 16 39 chr11 91173828 91173957 -59609596 + L2 LINE L2 2855 2980 -292 625 366 160 9 chr11 91174018 91174580 -59608973 + L3 LINE CR1 903 1549 -28 2865 158 35 2 chr11 91175521 91176001 -59607552 - MER44D DNA MER2_type 0 605 55 1617 239 55 43 chr11 91176201 91176712 -59606841 + LTR40a LTR ERVL 3 519 0 474 262 152 0 chr11 91176812 91176957 -59606596 - MIR SINE MIR 0 262 96 204 393 74 8 chr11 91176967 91177089 -59606464 + L2 LINE L2 2930 3059 -213 261 75 0 0 chr11 91177737 91177777 -59605776 + (TC)n Simple_repeat Simple_repeat 1 40 0 249 33 0 0 chr11 91177777 91177807 -59605746 + (TA)n Simple_repeat Simple_repeat 1 30 0 396 0 0 0 chr11 91177926 91177970 -59605583 + (TC)n Simple_repeat Simple_repeat 1 44 0 351 0 0 0 chr11 91177969 91178008 -59605545 + (CA)n Simple_repeat Simple_repeat 1 39 0 * 295 192 0 0 chr11 91178008 91178083 -59605470 - Alu SINE Alu -251 51 1 432 223 173 0 chr11 91178278 91178417 -59605136 - MIR SINE MIR -12 250 88 372 279 41 0 chr11 91179244 91179366 -59604187 + MIR SINE MIR 136 262 0 22 0 0 0 chr11 91179366 91179388 -59604165 + AT_rich Low_complexity Low_complexity 1 22 0 253 350 0 0 chr11 91180136 91180216 -59603337 + (CA)n Simple_repeat Simple_repeat 1 80 0 1390 212 17 10 chr11 91180428 91180716 -59602837 - AluJo SINE Alu -18 294 5 411 310 23 46 chr11 91180862 91181036 -59602517 + MIR3 SINE MIR 34 203 -5 1144 124 82 0 chr11 91182175 91182369 -59601184 + L1MA5A LINE L1 6068 6277 -20 224 285 62 62 chr11 91182534 91182664 -59600889 - L2 LINE L2 -24 3289 3160 21 36 0 0 chr11 91184309 91184337 -59599216 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr11 91185026 91185065 -59598488 + AT_rich Low_complexity Low_complexity 1 39 0 398 302 44 78 chr11 91185093 91185298 -59598255 - L2 LINE L2 -42 3230 3033 1168 190 113 15 chr11 91185757 91186131 -59597422 + MSTB LTR MaLR 1 457 0 609 221 268 16 chr11 91186226 91186416 -59597137 - MIR SINE MIR -24 238 1 532 320 126 28 chr11 91186473 91187014 -59596539 - L2 LINE L2 -965 2349 1756 195 276 52 0 chr11 91187104 91187162 -59596391 + MIR SINE MIR 126 186 -76 32 26 0 0 chr11 91187285 91187324 -59596229 + AT_rich Low_complexity Low_complexity 1 39 0 2793 161 9 33 chr11 91187409 91187979 -59595574 - L1MB8 LINE L1 -9 6169 5614 2065 140 0 3 chr11 91187998 91188305 -59595248 - AluSx SINE Alu -6 306 1 258 213 0 0 chr11 91191384 91191431 -59592122 + MIR3 SINE MIR 113 159 -49 467 293 104 24 chr11 91191656 91191820 -59591733 + MER91A DNA MER1_type 18 194 -2 512 330 128 4 chr11 91192312 91192539 -59591014 - MIR SINE MIR 0 262 8 206 177 32 32 chr11 91192542 91192604 -59590949 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 466 260 260 0 chr11 91192711 91192865 -59590688 + MIR SINE MIR 18 211 -51 268 337 45 11 chr11 91192960 91193049 -59590504 - L2 LINE L2 -33 3280 3189 394 303 42 0 chr11 91193126 91193245 -59590308 + MIR SINE MIR 132 255 -7 197 375 19 10 chr11 91193601 91193705 -59589848 + MIR SINE MIR 21 125 -137 193 280 120 32 chr11 91194004 91194129 -59589424 + MIR SINE MIR 81 216 -46 395 237 51 102 chr11 91194981 91195158 -59588395 - MIR SINE MIR -75 187 20 418 385 104 20 chr11 91195345 91195787 -59587766 + L2 LINE L2 2497 2975 -339 807 245 109 37 chr11 91196736 91197111 -59586442 + MER93a LTR ERV1 1 402 0 238 365 42 0 chr11 91197197 91197293 -59586260 + L2 LINE L2 3197 3296 -17 26 50 0 0 chr11 91198261 91198301 -59585252 + AT_rich Low_complexity Low_complexity 1 40 0 1293 313 126 11 chr11 91198860 91199708 -59583845 - L2 LINE L2 0 3313 2356 895 252 34 6 chr11 91200297 91200540 -59583013 + MIR SINE MIR 14 257 -5 297 286 155 25 chr11 91201493 91201654 -59581899 + MIR SINE MIR 76 257 -5 663 281 61 87 chr11 91202270 91202762 -59580791 + MLT1J LTR MaLR 33 511 0 2435 71 0 0 chr11 91203923 91204218 -59579335 - AluY SINE Alu -15 296 2 202 191 71 0 chr11 91204346 91204388 -59579165 + L2 LINE L2 3228 3272 0 949 165 23 0 chr11 91206019 91206195 -59577358 + MER96B DNA MER1_type? 238 417 0 405 289 142 11 chr11 91207517 91207707 -59575846 + MIR SINE MIR 48 262 0 21 0 0 0 chr11 91208749 91208770 -59574783 + AT_rich Low_complexity Low_complexity 1 21 0 2538 56 0 3 chr11 91208911 91209216 -59574337 + AluY SINE Alu 1 304 -7 741 279 76 47 chr11 91209295 91209912 -59573641 + L1ME4a LINE L1 5271 5905 -216 206 277 15 15 chr11 91210031 91210096 -59573457 + GA-rich Low_complexity Low_complexity 5 69 0 213 94 0 0 chr11 91210303 91210335 -59573218 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 373 284 133 38 chr11 91212052 91212263 -59571290 - MIR SINE MIR 0 262 32 472 310 129 9 chr11 91212377 91212609 -59570944 + MIR SINE MIR 2 261 -1 740 161 31 52 chr11 91212743 91212936 -59570617 + MER53 DNA DNA 1 189 0 28 29 0 0 chr11 91213049 91213084 -59570469 + AT_rich Low_complexity Low_complexity 1 35 0 1846 154 7 14 chr11 91213084 91213377 -59570176 - AluSx SINE Alu -19 293 3 257 308 8 0 chr11 91213937 91214057 -59569496 + L1ME4a LINE L1 5804 5924 -197 384 218 185 28 chr11 91214206 91214417 -59569136 + L1ME4a LINE L1 5820 6063 -58 26 0 0 0 chr11 91214417 91214443 -59569110 + AT_rich Low_complexity Low_complexity 1 26 0 1051 120 27 22 chr11 91214451 91214555 -59568998 + L1MA9 LINE L1 6124 6231 -81 2116 108 111 15 chr11 91214555 91214887 -59568666 + THE1B LTR MaLR 1 364 0 1051 120 27 22 chr11 91214887 91214966 -59568587 + L1MA9 LINE L1 6231 6308 -4 581 325 57 0 chr11 91215475 91215703 -59567850 + MIR SINE MIR 8 248 -14 445 147 0 0 chr11 91215936 91216011 -59567542 + L1PB1 LINE L1 6069 6143 -8 891 182 13 0 chr11 91216821 91216980 -59566573 + AluSg/x SINE Alu 143 303 -9 351 0 0 0 chr11 91217492 91217531 -59566022 + (TG)n Simple_repeat Simple_repeat 2 40 0 442 43 29 14 chr11 91217585 91217654 -59565899 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 1838 162 13 0 chr11 91217665 91217973 -59565580 - AluSx SINE Alu 0 312 1 314 279 44 82 chr11 91218023 91218206 -59565347 - MER5B DNA MER1_type 0 178 3 781 241 163 0 chr11 91219311 91219514 -59564039 - MIR SINE MIR -24 238 3 706 249 96 0 chr11 91220368 91220565 -59562988 + MIR SINE MIR 6 221 -41 313 280 133 28 chr11 91220594 91220737 -59562816 + MIR SINE MIR 105 262 0 187 280 194 21 chr11 91221193 91221286 -59562267 - MIR SINE MIR -85 177 69 845 154 3 0 chr11 91221286 91221436 -59562117 - L1MA9 LINE L1 -143 6148 5995 322 262 183 16 chr11 91221730 91221856 -59561697 + MIR SINE MIR 66 212 -50 2070 131 7 0 chr11 91221998 91222303 -59561250 + AluSq SINE Alu 1 307 -6 304 292 83 0 chr11 91222435 91222531 -59561022 + L2 LINE L2 2987 3090 -182 231 303 40 30 chr11 91222822 91222921 -59560632 + L1ME4a LINE L1 5513 5612 -509 1377 268 147 35 chr11 91222933 91223748 -59559805 - L2 LINE L2 -4 3309 2388 1804 168 0 7 chr11 91223748 91224040 -59559513 + AluJb SINE Alu 1 290 -22 1377 268 147 35 chr11 91224040 91224156 -59559397 - L2 LINE L2 -925 2388 2286 765 229 145 24 chr11 91224239 91224576 -59558977 + L1ME4a LINE L1 5742 6119 -2 1797 125 39 39 chr11 91224951 91225263 -59558290 + MER1B DNA MER1_type 28 339 0 771 260 77 12 chr11 91226782 91227028 -59556525 - MIR SINE MIR 0 262 1 591 216 183 20 chr11 91227096 91227351 -59556202 + LTR28 LTR ERV1 1 348 -672 * 1402 194 62 52 chr11 91227350 91227774 -59555779 + MLT2A2 LTR ERVL 103 549 -5 * 3085 176 105 0 chr11 91227773 91228337 -59555216 + LTR28 LTR ERV1 398 1020 0 1133 350 42 21 chr11 91229190 91229844 -59553709 + L2 LINE L2 2645 3313 0 209 364 33 26 chr11 91230530 91230681 -59552872 + MIR3 SINE MIR 47 198 -10 340 331 38 32 chr11 91231258 91231415 -59552138 - MIR SINE MIR -58 204 47 370 279 66 25 chr11 91231427 91231549 -59552004 + MIR SINE MIR 28 154 -108 250 369 20 27 chr11 91231768 91231917 -59551636 + L2 LINE L2 2915 3062 -210 210 270 95 27 chr11 91232364 91232438 -59551115 + L2 LINE L2 3229 3307 -6 905 244 25 0 chr11 91232775 91232976 -59550577 - MIR SINE MIR -3 259 54 486 291 41 36 chr11 91233135 91233331 -59550222 + MIR SINE MIR 60 256 -6 790 301 22 36 chr11 91237629 91237991 -59545562 - L1ME4a LINE L1 -289 5832 5476 4709 204 30 7 chr11 91238319 91239728 -59543825 - L1MA9 LINE L1 -39 6273 4826 323 269 0 177 chr11 91240130 91240226 -59543327 - L2 LINE L2 -1 3271 3206 1005 233 16 8 chr11 91240226 91240484 -59543069 - MIR SINE MIR 0 262 3 323 269 0 177 chr11 91240484 91240528 -59543025 - L2 LINE L2 -66 3206 3156 399 268 35 83 chr11 91240667 91240895 -59542658 - MIR SINE MIR 0 262 46 2337 100 3 0 chr11 91241249 91241558 -59541995 - AluSq SINE Alu -3 310 1 21 0 0 0 chr11 91241747 91241768 -59541785 + AT_rich Low_complexity Low_complexity 1 21 0 506 338 61 10 chr11 91242214 91242412 -59541141 + MIR SINE MIR 2 209 -53 26 74 0 0 chr11 91243521 91243575 -59539978 + AT_rich Low_complexity Low_complexity 1 54 0 180 352 125 0 chr11 91244224 91244312 -59539241 + L2 LINE L2 3158 3256 -16 226 176 0 59 chr11 91244463 91244514 -59539039 - L2 LINE L2 -2 3311 3264 244 193 136 57 chr11 91244712 91244800 -59538753 + Charlie7 DNA MER1_type 1 95 -2517 458 262 11 66 chr11 91245345 91245528 -59538025 - MER5B DNA MER1_type -2 176 4 234 272 32 114 chr11 91245578 91245736 -59537817 + MIR SINE MIR 48 192 -70 426 243 92 26 chr11 91246176 91246328 -59537225 + MER103 DNA DNA 2 163 -3 296 307 33 40 chr11 91246388 91246538 -59537015 - MIR3 SINE MIR -48 160 12 22 0 0 0 chr11 91247087 91247109 -59536444 + AT_rich Low_complexity Low_complexity 1 22 0 384 346 127 19 chr11 91247420 91247735 -59535818 + L3 LINE CR1 1215 1563 -14 258 32 0 0 chr11 91250245 91250276 -59533277 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 390 321 36 29 chr11 91250565 91250705 -59532848 + MIR SINE MIR 2 142 -120 1291 175 64 85 chr11 91251739 91252128 -59531425 + MLT1B LTR MaLR 10 390 0 216 0 0 0 chr11 91253115 91253139 -59530414 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 1890 125 29 4 chr11 91253142 91253422 -59530131 - AluSx SINE Alu -25 287 1 6550 147 44 18 chr11 91253589 91254789 -59528764 + Tigger3b DNA MER2_type 1 1231 0 21 36 0 0 chr11 91255107 91255135 -59528418 + AT_rich Low_complexity Low_complexity 1 28 0 473 0 18 0 chr11 91255865 91255922 -59527631 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 186 143 0 0 chr11 91256253 91256288 -59527265 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 1366 138 45 19 chr11 91256382 91256651 -59526902 - L1MA4 LINE L1 -1 6299 6024 4601 118 9 3 chr11 91257024 91257719 -59525834 - L1PA11 LINE L1 0 6174 5476 7697 25 0 0 chr11 91257747 91258813 -59524740 - L1PA3 LINE L1 -3 6152 5087 5615 30 0 0 chr11 91258814 91259482 -59524071 + L1PA3 LINE L1 4423 5090 -1056 2575 130 14 16 chr11 91259480 91260044 -59523509 - L1PA11 LINE L1 -685 5489 4927 * 1714 126 66 0 chr11 91260046 91260332 -59523221 - L1PA11 LINE L1 -1427 4719 4415 435 288 80 86 chr11 91260420 91260733 -59522820 + L2 LINE L2 3003 3313 0 217 171 24 0 chr11 91263200 91263241 -59520312 + CT-rich Low_complexity Low_complexity 4 45 0 1300 212 28 40 chr11 91263463 91263789 -59519764 + MLT1C LTR MaLR 1 322 -145 525 354 20 78 chr11 91263846 91264241 -59519312 - L2 LINE L2 -5 3267 2896 279 359 103 41 chr11 91264408 91264795 -59518758 - L2 LINE L2 -1779 1535 1125 249 214 18 0 chr11 91264891 91264947 -59518606 + L2 LINE L2 3257 3313 0 693 191 0 22 chr11 91266083 91266219 -59517334 - FLAM_A SINE Alu 0 133 1 2036 208 35 20 chr11 91266381 91266837 -59516716 - MLT1C LTR MaLR -4 463 1 6525 138 17 5 chr11 91267200 91268805 -59514748 + L1MA1 LINE L1 4682 6302 0 29 0 0 0 chr11 91268806 91268835 -59514718 + AT_rich Low_complexity Low_complexity 1 29 0 2235 105 20 7 chr11 91269140 91269446 -59514107 + AluSx SINE Alu 3 312 0 2004 95 0 15 chr11 91269571 91269845 -59513708 + AluSx SINE Alu 37 306 -6 31 26 0 0 chr11 91269961 91269999 -59513554 + AT_rich Low_complexity Low_complexity 1 38 0 12956 218 41 14 chr11 91270008 91273923 -59509630 + L1MA4A LINE L1 1 4022 -2826 237 204 20 0 chr11 91273924 91273973 -59509580 - THE1A LTR MaLR 0 355 306 6814 125 11 39 chr11 91273973 91275076 -59508477 - THE1C-int LTR MaLR -506 1074 3 1971 142 32 45 chr11 91275078 91275458 -59508095 - THE1C LTR MaLR 0 375 1 4890 194 99 43 chr11 91275458 91278362 -59505191 + L1MA4A LINE L1 4019 6996 -6 24 32 0 0 chr11 91278657 91278688 -59504865 + AT_rich Low_complexity Low_complexity 1 31 0 430 302 35 29 chr11 91279406 91279578 -59503975 + MIR SINE MIR 35 207 -55 201 158 0 0 chr11 91280599 91280637 -59502916 + T-rich Low_complexity Low_complexity 1 38 0 198 265 0 0 chr11 91280695 91280744 -59502809 + L2 LINE L2 3265 3313 0 437 292 66 66 chr11 91281435 91281678 -59501875 - MIR SINE MIR -14 248 6 1483 177 42 35 chr11 91281979 91282287 -59501266 - AluJo SINE Alu 0 310 1 21 0 0 0 chr11 91282760 91282781 -59500772 + AT_rich Low_complexity Low_complexity 1 21 0 1598 209 3 3 chr11 91282874 91283194 -59500359 + AluJb SINE Alu 1 320 0 33 0 0 0 chr11 91283561 91283594 -59499959 + AT_rich Low_complexity Low_complexity 1 33 0 330 309 250 29 chr11 91284467 91284739 -59498814 - L3 LINE CR1 -5 1572 1241 388 321 30 8 chr11 91284741 91284875 -59498678 - MIR3 SINE MIR -28 180 44 285 310 40 0 chr11 91284896 91284996 -59498557 - L3 LINE CR1 -321 1256 1153 2217 125 0 0 chr11 91285272 91285576 -59497977 + AluSg SINE Alu 1 304 -6 319 287 161 23 chr11 91286235 91286409 -59497144 - MIR SINE MIR -15 247 50 539 231 48 123 chr11 91286982 91287060 -59496493 - MIR SINE MIR -12 250 168 6413 94 62 2 chr11 91287060 91288388 -59495165 - L1PA11 LINE L1 -9 6165 4801 539 231 48 123 chr11 91288388 91288578 -59494975 - MIR SINE MIR -94 168 2 320 296 40 68 chr11 91288629 91288805 -59494748 - L2 LINE L2 -221 3051 2881 313 114 0 0 chr11 91289480 91289524 -59494029 - MIR SINE MIR -16 246 203 540 318 60 37 chr11 91289537 91289940 -59493613 - L1M4c LINE L1 -4788 1596 1185 908 243 124 50 chr11 91289992 91290531 -59493022 + L1MC5 LINE L1 6953 7531 -430 259 251 31 74 chr11 91290646 91290863 -59492690 + L1ME3 LINE L1 5965 6170 0 2132 177 53 22 chr11 91291200 91291653 -59491900 + MLT1C LTR MaLR 1 467 0 203 221 29 44 chr11 91291984 91292052 -59491501 + (TATATG)n Simple_repeat Simple_repeat 5 71 0 * 231 190 0 35 chr11 91292002 91292060 -59491493 + (TA)n Simple_repeat Simple_repeat 2 57 0 186 71 0 0 chr11 91292072 91292100 -59491453 + (CATA)n Simple_repeat Simple_repeat 3 30 0 412 323 0 26 chr11 91292781 91292936 -59490617 - MIR SINE MIR 0 262 112 2146 88 39 0 chr11 91293445 91293730 -59489823 - AluSp SINE Alu -15 298 3 1184 173 17 9 chr11 91295241 91295472 -59488081 + Tigger2 DNA MER2_type 1 233 -2485 1903 158 48 20 chr11 91295472 91295827 -59487726 + Tigger2 DNA MER2_type 2352 2716 -2 2836 197 55 24 chr11 91296052 91296728 -59486825 + L1MA7 LINE L1 5595 6291 0 1848 109 63 20 chr11 91296854 91297156 -59486397 - THE1B LTR MaLR -49 315 1 195 391 54 0 chr11 91298095 91298187 -59485366 - MIR3 SINE MIR -6 202 106 312 344 70 16 chr11 91298441 91298569 -59484984 + MIR SINE MIR 22 156 -106 359 338 99 70 chr11 91300345 91300688 -59482865 + L2 LINE L2 2920 3272 0 265 325 13 70 chr11 91301447 91301604 -59481949 + L2 LINE L2 2910 3057 -215 186 191 0 0 chr11 91301667 91301709 -59481844 + (TA)n Simple_repeat Simple_repeat 2 43 0 190 333 45 15 chr11 91301768 91301834 -59481719 + L2 LINE L2 3137 3204 -68 234 266 63 0 chr11 91301834 91301913 -59481640 + MIR SINE MIR 79 162 -100 196 185 93 37 chr11 91301898 91301952 -59481601 - MIR SINE MIR -82 180 124 * 13405 142 38 27 chr11 91303408 91305441 -59478112 + Tigger1 DNA MER2_type 1 2065 -353 2172 109 10 6 chr11 91305441 91305567 -59477986 + AluSp SINE Alu 1 125 -188 257 68 23 0 chr11 91305567 91305611 -59477942 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 2172 109 10 6 chr11 91305611 91305796 -59477757 + AluSp SINE Alu 125 313 0 13405 142 38 27 chr11 91305796 91306151 -59477402 + Tigger1 DNA MER2_type 2065 2415 -3 362 274 91 38 chr11 91306717 91306903 -59476650 - L3 LINE CR1 -106 1471 1276 587 223 98 57 chr11 91306915 91307108 -59476445 - L2 LINE L2 -2 3311 3111 1492 334 147 7 chr11 91307133 91307908 -59475645 - L2 LINE L2 -339 2975 2092 227 293 0 49 chr11 91309295 91309377 -59474176 + L2 LINE L2 3187 3264 -8 1350 89 15 0 chr11 91309648 91309851 -59473702 - L1PA13 LINE L1 0 6163 5958 1576 92 9 0 chr11 91309851 91310167 -59473386 + L1P4 LINE L1 5162 5479 -684 2397 123 15 0 chr11 91310368 91310710 -59472843 - THE1C LTR MaLR -2 373 27 9517 27 1 0 chr11 91310902 91312807 -59470746 - L1PA2 LINE L1 0 6155 4250 870 267 75 47 chr11 91312812 91313239 -59470314 - L1MC4a LINE L1 -1982 5826 5388 326 323 24 8 chr11 91313263 91313387 -59470166 - L1MC4a LINE L1 -914 5232 5107 25 31 0 0 chr11 91313388 91313420 -59470133 + AT_rich Low_complexity Low_complexity 1 32 0 2128 154 31 14 chr11 91313438 91313796 -59469757 + THE1B LTR MaLR 1 364 0 262 322 33 0 chr11 91313797 91313887 -59469666 - L1MC4a LINE L1 -1167 4979 4887 22 35 0 0 chr11 91313978 91314007 -59469546 + AT_rich Low_complexity Low_complexity 1 29 0 33 66 0 0 chr11 91314127 91314188 -59469365 + AT_rich Low_complexity Low_complexity 1 61 0 522 46 0 0 chr11 91314306 91314371 -59469182 - L1PA10 LINE L1 -16 6152 6088 1737 92 12 0 chr11 91314371 91314621 -59468932 + L1PA10 LINE L1 5798 6050 -118 353 196 13 46 chr11 91314778 91314931 -59468622 + (TTAA)n Simple_repeat Simple_repeat 3 150 0 1071 169 0 15 chr11 91315059 91315260 -59468293 - L1PA13 LINE L1 -3 6160 5963 221 310 0 0 chr11 91315672 91315730 -59467823 + CT-rich Low_complexity Low_complexity 2 59 0 532 249 178 14 chr11 91315745 91315958 -59467595 + MIR SINE MIR 2 249 -13 770 346 79 55 chr11 91316979 91317777 -59465776 + L3 LINE CR1 682 1498 -79 260 123 0 53 chr11 91317919 91317976 -59465577 - MADE1 DNA Mariner 0 80 27 22 0 0 0 chr11 91318041 91318063 -59465490 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr11 91319830 91319854 -59463699 + (TAA)n Simple_repeat Simple_repeat 1 24 0 249 361 66 33 chr11 91321525 91321769 -59461784 - L2 LINE L2 -217 3055 2804 5402 44 7 0 chr11 91321984 91322669 -59460884 - L1PA4 LINE L1 -773 5373 4684 6690 31 2 0 chr11 91322669 91323466 -59460087 + L1PA4 LINE L1 5355 6154 -1 269 231 33 33 chr11 91323923 91324014 -59459539 + (TA)n Simple_repeat Simple_repeat 2 92 0 1677 87 11 32 chr11 91324110 91324419 -59459134 + L1P4 LINE L1 5222 5523 -638 309 118 0 0 chr11 91324566 91324617 -59458936 + (T)n Simple_repeat Simple_repeat 1 51 0 307 362 43 14 chr11 91325077 91325218 -59458335 + MIR SINE MIR 16 160 -102 4100 210 31 21 chr11 91325245 91326216 -59457337 + Charlie1a DNA MER1_type 70 1050 -405 1065 179 72 16 chr11 91326247 91326554 -59456999 + Charlie1a DNA MER1_type 1131 1454 -1 1063 207 156 29 chr11 91326962 91327237 -59456316 - AluJb SINE Alu 0 312 3 840 286 120 47 chr11 91327782 91328247 -59455306 + L2 LINE L2 2815 3313 0 427 217 11 0 chr11 91328322 91328414 -59455139 + MSTD LTR MaLR 1 93 -303 356 242 205 19 chr11 91328418 91328579 -59454974 + MIR SINE MIR 58 248 -14 2414 107 43 3 chr11 91328624 91328970 -59454583 - THE1B LTR MaLR -4 360 1 235 333 0 0 chr11 91329334 91329397 -59454156 + L2 LINE L2 2995 3057 -215 275 290 0 0 chr11 91330004 91330066 -59453487 + L2 LINE L2 3252 3313 0 2099 108 0 7 chr11 91330117 91330427 -59453126 - AluSq SINE Alu 0 308 1 180 98 20 39 chr11 91331695 91331746 -59451807 + (TA)n Simple_repeat Simple_repeat 2 51 0 242 93 0 23 chr11 91333277 91333320 -59450233 + (TTCA)n Simple_repeat Simple_repeat 2 43 0 378 325 26 0 chr11 91333320 91333434 -59450119 - L2 LINE L2 0 3272 3156 316 312 32 0 chr11 91333473 91333566 -59449987 + MIR SINE MIR 84 179 -83 197 244 183 49 chr11 91333564 91333646 -59449907 + L2 LINE L2 3180 3272 0 * 324 0 0 0 chr11 91333811 91333847 -59449706 + (T)n Simple_repeat Simple_repeat 1 36 0 50 12 0 50 chr11 91333847 91333927 -59449626 + GC_rich Low_complexity Low_complexity 1 76 0 3571 83 8 18 chr11 91334028 91334536 -59449017 + L1PA11 LINE L1 5672 6174 0 28 0 0 0 chr11 91334549 91334577 -59448976 + AT_rich Low_complexity Low_complexity 1 28 0 285 279 29 10 chr11 91334702 91334806 -59448747 - MIR SINE MIR -78 184 79 21 36 0 0 chr11 91336051 91336079 -59447474 + AT_rich Low_complexity Low_complexity 1 28 0 470 289 47 39 chr11 91336376 91336608 -59446945 + L2 LINE L2 2612 2845 -469 411 314 170 40 chr11 91336658 91337005 -59446548 + L2 LINE L2 2921 3312 -1 2057 92 27 0 chr11 91337148 91337441 -59446112 - L1PA8 LINE L1 -3 6169 5869 22 35 0 0 chr11 91338480 91338509 -59445044 + AT_rich Low_complexity Low_complexity 1 29 0 1062 257 16 4 chr11 91338774 91339027 -59444526 - MIR SINE MIR -5 257 2 359 219 278 35 chr11 91339027 91339177 -59444376 - MIR SINE MIR -24 238 48 1563 194 14 4 chr11 91339458 91339591 -59443962 + AluJo SINE Alu 1 131 -190 315 0 0 0 chr11 91339591 91339626 -59443927 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1563 194 14 4 chr11 91339626 91339810 -59443743 + AluJo SINE Alu 131 321 0 29 70 0 0 chr11 91339990 91340047 -59443506 + AT_rich Low_complexity Low_complexity 1 57 0 26 0 0 0 chr11 91340672 91340698 -59442855 + AT_rich Low_complexity Low_complexity 1 26 0 2159 119 3 0 chr11 91341115 91341408 -59442145 + AluSx SINE Alu 1 294 -18 24 0 0 0 chr11 91341408 91341432 -59442121 + AT_rich Low_complexity Low_complexity 1 24 0 492 307 131 8 chr11 91341885 91342152 -59441401 + L2 LINE L2 2393 2692 -622 225 222 14 28 chr11 91342159 91342231 -59441322 + MLT1L LTR MaLR 9 79 -536 611 286 10 20 chr11 91342293 91342492 -59441061 + MIR SINE MIR 63 259 -3 282 341 72 33 chr11 91342463 91342707 -59440846 - MIR SINE MIR -5 257 9 * 386 282 91 0 chr11 91343367 91343477 -59440076 + MIR SINE MIR 30 149 -59 319 172 0 16 chr11 91344203 91344267 -59439286 + FLAM_A SINE Alu 65 127 -6 4732 42 0 0 chr11 91344692 91345263 -59438290 + L1PA5 LINE L1 5576 6146 -8 622 290 39 46 chr11 91345535 91345794 -59437759 + MIR SINE MIR 6 262 0 5625 121 18 8 chr11 91345988 91347380 -59436173 + L1PA15 LINE L1 4765 6165 0 2297 95 3 3 chr11 91347623 91347929 -59435624 + AluSq SINE Alu 1 306 -7 1879 108 0 4 chr11 91348218 91348502 -59435051 + AluSg SINE Alu 22 304 0 273 29 0 0 chr11 91348701 91348735 -59434818 + (CA)n Simple_repeat Simple_repeat 1 34 0 27 49 0 0 chr11 91348935 91348976 -59434577 + AT_rich Low_complexity Low_complexity 1 41 0 417 103 0 181 chr11 91349675 91349791 -59433762 + MER53 DNA DNA 1 95 -94 647 248 20 26 chr11 91350191 91350365 -59433188 - MER5A DNA MER1_type -9 169 1 269 320 20 34 chr11 91351197 91351344 -59432209 + L2 LINE L2 2598 2742 -572 220 256 64 39 chr11 91351903 91351981 -59431572 + MIR SINE MIR 3 82 -180 197 267 17 17 chr11 91352005 91352065 -59431488 + MIR3 SINE MIR 149 208 0 29 60 0 0 chr11 91352264 91352314 -59431239 + AT_rich Low_complexity Low_complexity 1 50 0 1635 165 10 45 chr11 91352321 91352630 -59430923 - AluJb SINE Alu -14 298 1 738 145 8 8 chr11 91352636 91352760 -59430793 - FRAM SINE Alu -18 158 35 320 374 22 17 chr11 91352790 91352969 -59430584 + L2 LINE L2 2579 2758 -556 24 0 0 0 chr11 91353042 91353066 -59430487 + AT_rich Low_complexity Low_complexity 1 24 0 328 253 11 177 chr11 91353175 91353361 -59430192 + MER91A DNA MER1_type 42 196 0 344 290 65 86 chr11 91353593 91353838 -59429715 - L2 LINE L2 -81 3191 2952 360 322 78 62 chr11 91353851 91354208 -59429345 - L2 LINE L2 -483 2831 2469 214 286 52 13 chr11 91354294 91354371 -59429182 + L2 LINE L2 3234 3313 0 388 257 9 35 chr11 91354674 91354787 -59428766 - L2 LINE L2 0 3272 3163 294 295 62 27 chr11 91355353 91355465 -59428088 + L2 LINE L2 3158 3273 -40 1016 288 83 57 chr11 91355548 91355755 -59427798 + L2 LINE L2 2476 2676 -637 2519 50 0 0 chr11 91355755 91356053 -59427500 - AluY SINE Alu -13 298 1 1016 288 83 57 chr11 91356053 91356669 -59426884 + L2 LINE L2 2676 3313 0 262 307 73 53 chr11 91357679 91357829 -59425724 - MIR SINE MIR -109 153 1 880 322 161 33 chr11 91357840 91358737 -59424816 + L2 LINE L2 1089 2099 -1215 2453 230 96 24 chr11 91358782 91359675 -59423878 - Charlie2 DNA MER1_type -48 2814 1857 330 324 27 34 chr11 91359704 91359852 -59423701 - Charlie2 DNA MER1_type -2505 277 131 603 313 70 97 chr11 91359929 91360500 -59423053 + L2 LINE L2 2103 2643 -629 2178 127 3 0 chr11 91360500 91360808 -59422745 - AluSx SINE Alu -3 309 1 603 313 70 97 chr11 91360808 91361422 -59422131 + L2 LINE L2 2643 3272 0 1928 141 0 3 chr11 91361935 91362233 -59421320 + AluSq SINE Alu 1 297 -16 4746 52 11 7 chr11 91362737 91363346 -59420207 - L1PA6 LINE L1 -186 5968 5357 304 250 80 0 chr11 91363559 91363659 -59419894 + L1ME4a LINE L1 6011 6118 -3 238 315 177 8 chr11 91363918 91364048 -59419505 + MIR SINE MIR 12 163 -99 2286 119 0 0 chr11 91364224 91364527 -59419026 + AluSx SINE Alu 2 304 -8 1721 170 66 45 chr11 91364669 91365046 -59418507 + MSTD LTR MaLR 4 388 -8 774 387 26 0 chr11 91365224 91365568 -59417985 + MER115 DNA AcHobo 189 541 -152 1437 214 50 69 chr11 91365803 91366281 -59417272 + MER31B LTR ERV1 1 661 0 21 0 0 0 chr11 91366460 91366481 -59417072 + AT_rich Low_complexity Low_complexity 1 21 0 188 188 188 0 chr11 91366820 91366868 -59416685 - MIR SINE MIR -116 92 36 4089 161 44 29 chr11 91367554 91367703 -59415850 - L1MB7 LINE L1 -1 6183 6038 1974 176 0 0 chr11 91367703 91368015 -59415538 - AluJb SINE Alu 0 312 1 4089 161 44 29 chr11 91368015 91368701 -59414852 - L1MB7 LINE L1 -146 6038 5319 2129 211 72 11 chr11 91368701 91369176 -59414377 + MLT1D LTR MaLR 1 504 -1 4089 161 44 29 chr11 91369176 91369577 -59413976 - L1MB7 LINE L1 -865 5319 4926 2351 87 0 0 chr11 91371470 91371759 -59411794 + AluSq SINE Alu 1 289 -24 189 0 0 0 chr11 91371873 91371894 -59411659 + (A)n Simple_repeat Simple_repeat 1 21 0 545 263 181 16 chr11 91372105 91372535 -59411018 + L1ME4a LINE L1 5522 6022 -99 1662 228 131 73 chr11 91373083 91373701 -59409852 - MLT1E1 LTR MaLR 0 654 1 466 299 81 0 chr11 91373811 91373985 -59409568 - MIR SINE MIR -55 207 20 2327 103 0 0 chr11 91374213 91374523 -59409030 + AluSg SINE Alu 1 310 0 1787 228 58 20 chr11 91374542 91375059 -59408494 - MLT1E3 LTR MaLR -35 589 19 2271 109 0 0 chr11 91375064 91375367 -59408186 - AluSx SINE Alu -4 308 6 713 11 0 0 chr11 91375429 91375516 -59408037 - L1PA2 LINE L1 -1 6154 6068 818 267 73 16 chr11 91375553 91375800 -59407753 + MIR SINE MIR 2 262 0 190 154 77 96 chr11 91375867 91375919 -59407634 + MIR SINE MIR 90 140 -68 1303 185 149 40 chr11 91375954 91376283 -59407270 - MLT1A1 LTR MaLR 0 365 1 407 246 173 11 chr11 91376713 91376904 -59406649 - MIR SINE MIR -10 252 31 252 344 66 8 chr11 91377081 91377203 -59406350 + MIR3 SINE MIR 37 165 -43 281 215 0 46 chr11 91377298 91377363 -59406190 + MER91B DNA MER1_type 12 73 -117 276 321 152 18 chr11 91377375 91377540 -59406013 + L3 LINE CR1 1303 1489 -88 268 277 96 45 chr11 91377610 91377712 -59405841 + MIR SINE MIR 77 193 -69 189 0 0 0 chr11 91377712 91377733 -59405820 + (TG)n Simple_repeat Simple_repeat 2 22 0 268 277 96 45 chr11 91377733 91377807 -59405746 + MIR SINE MIR 193 262 0 1907 204 35 35 chr11 91378626 91379087 -59404466 + MER31B LTR ERV1 6 466 0 1943 149 33 0 chr11 91379494 91379796 -59403757 - AluSx SINE Alu 0 312 1 191 364 74 16 chr11 91380047 91380168 -59403385 + L2 LINE L2 3139 3266 -47 252 208 0 0 chr11 91381188 91381241 -59402312 + LTR66 LTR ERVL 394 446 -164 364 209 0 12 chr11 91381246 91381774 -59401779 + (TA)n Simple_repeat Simple_repeat 1 521 0 267 292 42 0 chr11 91382521 91382593 -59400960 - L2 LINE L2 -4 3309 3235 238 366 71 9 chr11 91382678 91382790 -59400763 - L2 LINE L2 -299 2973 2855 305 330 90 92 chr11 91383472 91383818 -59399735 + L2 LINE L2 2923 3267 -5 289 352 135 21 chr11 91383837 91384164 -59399389 + L3 LINE CR1 1196 1559 -18 437 227 58 58 chr11 91385431 91385638 -59397915 + L1ME LINE L1 5611 5817 -304 2607 153 22 7 chr11 91385638 91386094 -59397459 + L1PA16 LINE L1 5701 6163 -3 265 272 129 127 chr11 91386329 91386567 -59396986 - MIR SINE MIR -6 256 20 383 270 53 30 chr11 91386732 91386882 -59396671 + MIR SINE MIR 12 169 -39 417 54 0 0 chr11 91388313 91388369 -59395184 + (TG)n Simple_repeat Simple_repeat 1 56 0 197 95 0 24 chr11 91388402 91388444 -59395109 + (TG)n Simple_repeat Simple_repeat 1 41 0 186 43 0 0 chr11 91388443 91388466 -59395087 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 315 0 0 0 chr11 91388479 91388514 -59395039 + (TG)n Simple_repeat Simple_repeat 1 35 0 812 283 165 28 chr11 91389967 91390568 -59392985 - L2 LINE L2 -264 3008 2330 228 296 0 0 chr11 91390634 91390678 -59392875 - L2 LINE L2 -16 3256 3213 299 336 38 28 chr11 91391364 91391575 -59391978 + L2 LINE L2 2442 2654 -660 243 330 17 57 chr11 91391746 91391922 -59391631 - Charlie8 DNA MER1_type -2175 242 74 619 257 44 11 chr11 91391948 91392131 -59391422 - LTR16B LTR ERVL 0 464 276 334 282 100 47 chr11 91392163 91392333 -59391220 - LTR16B LTR ERVL -285 179 1 226 269 0 39 chr11 91392354 91392406 -59391147 - Charlie8 DNA MER1_type -2364 53 4 227 385 92 30 chr11 91392733 91393037 -59390516 + L2 LINE L2 2945 3267 -5 340 340 70 0 chr11 91393172 91393272 -59390281 - L2 LINE L2 -25 3247 3141 2066 96 48 0 chr11 91393508 91393799 -59389754 - AluY SINE Alu -6 305 1 291 122 0 0 chr11 91393799 91393848 -59389705 + (T)n Simple_repeat Simple_repeat 1 49 0 2652 45 0 3 chr11 91393986 91394298 -59389255 - AluY SINE Alu 0 311 1 2129 136 3 0 chr11 91394476 91394771 -59388782 + AluSx SINE Alu 1 296 -16 211 152 43 0 chr11 91395252 91395298 -59388255 + (CA)n Simple_repeat Simple_repeat 1 48 0 452 244 128 6 chr11 91395564 91395728 -59387825 + MIR SINE MIR 65 248 -14 2320 96 3 0 chr11 91397284 91397586 -59385967 - AluSp SINE Alu -10 303 1 269 202 101 93 chr11 91398501 91398630 -59384923 - L2 LINE L2 -1387 1927 1798 292 225 101 25 chr11 91398964 91399174 -59384379 + L1ME LINE L1 5267 5484 -642 339 335 52 21 chr11 91399180 91399371 -59384182 + L2 LINE L2 3117 3313 0 371 303 97 10 chr11 91399379 91399574 -59383979 + L1ME LINE L1 5507 5718 -403 1080 191 11 5 chr11 91399839 91400027 -59383526 - MLT1C LTR MaLR -45 422 234 646 225 7 0 chr11 91400032 91400170 -59383383 - FLAM_C SINE Alu -4 139 1 1030 167 66 35 chr11 91400171 91400398 -59383155 - MLT1C LTR MaLR -233 234 1 453 284 33 33 chr11 91400399 91400582 -59382971 + L2 LINE L2 3130 3312 -1 242 224 0 0 chr11 91402928 91402986 -59380567 - L1MC4 LINE L1 -1345 6697 6640 222 91 0 0 chr11 91403003 91403036 -59380517 + (CA)n Simple_repeat Simple_repeat 2 34 0 204 179 0 0 chr11 91403832 91403871 -59379682 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 189 0 0 0 chr11 91403944 91403965 -59379588 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 436 403 8 34 chr11 91405004 91405272 -59378281 - L2 LINE L2 -19 3253 2993 258 81 0 0 chr11 91406057 91406094 -59377459 + (TTC)n Simple_repeat Simple_repeat 3 39 0 674 224 0 0 chr11 91406097 91406213 -59377340 - FLAM_A SINE Alu -16 117 2 294 233 60 98 chr11 91406304 91406437 -59377116 + MIR3 SINE MIR 79 206 -2 237 192 244 0 chr11 91406490 91406568 -59376985 - L2 LINE L2 -31 3282 3186 282 73 0 0 chr11 91407127 91407168 -59376385 + (TG)n Simple_repeat Simple_repeat 2 42 0 446 275 170 6 chr11 91407444 91407580 -59375973 + L2 LINE L2 3109 3280 -33 189 0 0 0 chr11 91407580 91407601 -59375952 + (CAGAA)n Simple_repeat Simple_repeat 2 22 0 446 275 170 6 chr11 91407601 91407635 -59375918 + L2 LINE L2 3280 3307 -6 442 334 129 19 chr11 91407944 91408475 -59375078 - L2 LINE L2 -218 3054 2479 328 279 70 8 chr11 91408567 91408696 -59374857 + MIR SINE MIR 58 194 -68 213 121 0 0 chr11 91409873 91409906 -59373647 + (TG)n Simple_repeat Simple_repeat 2 34 0 421 269 87 47 chr11 91410532 91410681 -59372872 + MIR SINE MIR 46 200 -62 2051 145 0 3 chr11 91411101 91411405 -59372148 + AluSx SINE Alu 1 303 -9 309 320 109 0 chr11 91411574 91411702 -59371851 + L2 LINE L2 3126 3267 -5 203 265 235 30 chr11 91411761 91411927 -59371626 + L3 LINE CR1 1094 1293 -284 694 309 56 20 chr11 91411948 91412197 -59371356 - MIR SINE MIR -2 260 3 270 310 19 74 chr11 91412575 91412755 -59370798 + MIR SINE MIR 20 193 -60 437 278 60 13 chr11 91413355 91413506 -59370047 + MIR SINE MIR 61 218 -44 251 175 18 0 chr11 91413628 91413685 -59369868 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 213 122 61 0 chr11 91413721 91413770 -59369783 + (TA)n Simple_repeat Simple_repeat 2 53 0 200 256 12 0 chr11 91413806 91413892 -59369661 + (TA)n Simple_repeat Simple_repeat 1 87 0 2233 87 0 59 chr11 91414456 91414778 -59368775 + AluSc SINE Alu 1 303 -6 248 238 24 36 chr11 91414779 91414863 -59368690 + MLT1I LTR MaLR 105 187 -222 2515 180 25 38 chr11 91414899 91415421 -59368132 + MLT2B2 LTR ERVL 1 515 0 286 289 41 31 chr11 91415676 91415773 -59367780 - L2 LINE L2 -189 3083 2986 241 333 118 50 chr11 91416574 91417015 -59366538 - MLT1K LTR MaLR -18 570 100 1805 164 70 12 chr11 91417667 91417996 -59365557 - MER7A DNA MER2_type 0 346 1 1380 41 16 10 chr11 91418739 91418933 -59364620 + L1MA2 LINE L1 6110 6304 0 221 309 13 86 chr11 91419550 91419702 -59363851 - MER5B DNA MER1_type -19 159 19 23 0 0 0 chr11 91419893 91419916 -59363637 + AT_rich Low_complexity Low_complexity 1 23 0 469 261 105 50 chr11 91420325 91420563 -59362990 - MIR SINE MIR -1 261 11 26 50 0 0 chr11 91420563 91420603 -59362950 + AT_rich Low_complexity Low_complexity 1 40 0 13651 217 30 19 chr11 91420653 91422152 -59361401 - L1PA16 LINE L1 -5 6812 5331 1838 132 0 54 chr11 91422152 91422487 -59361066 - AluSg SINE Alu 0 319 1 13651 217 30 19 chr11 91422487 91424809 -59358744 - L1PA16 LINE L1 -1486 5331 2927 2531 65 0 0 chr11 91424809 91425117 -59358436 - AluY SINE Alu -3 308 1 13651 217 30 19 chr11 91425117 91426393 -59357160 - L1PA16 LINE L1 -3890 2927 1666 2218 120 0 0 chr11 91426431 91426730 -59356823 - AluSx SINE Alu -13 299 1 3110 47 0 0 chr11 91426947 91427327 -59356226 - L1PA5 LINE L1 -16 6138 5759 1620 34 0 0 chr11 91427327 91427533 -59356020 + L1P LINE L1 5122 5327 -819 307 260 10 0 chr11 91427537 91427633 -59355920 - L1PA16 LINE L1 -5182 1605 1509 603 372 5 14 chr11 91427680 91427903 -59355650 - L1PA16 LINE L1 -6564 223 3 424 380 39 18 chr11 91428164 91428443 -59355110 - L2 LINE L2 -404 2910 2626 877 226 0 0 chr11 91429869 91430028 -59353525 - FRAM SINE Alu -18 158 1 190 385 0 0 chr11 91430402 91430454 -59353099 - L2 LINE L2 -87 3185 3134 2365 88 0 0 chr11 91430490 91430795 -59352758 - AluY SINE Alu -6 305 1 191 333 0 0 chr11 91430834 91430885 -59352668 - L2 LINE L2 -214 3058 3008 504 288 86 27 chr11 91430888 91431110 -59352443 + MIR SINE MIR 2 236 -26 699 249 40 11 chr11 91431339 91431549 -59352004 - MIR SINE MIR -43 219 1 3586 307 103 35 chr11 91431677 91433923 -59349630 - L2 LINE L2 -124 3189 792 312 309 10 10 chr11 91433942 91434039 -59349514 - MIR SINE MIR -93 115 19 360 271 0 0 chr11 91434139 91434209 -59349344 + MER45 DNA AcHobo 2 71 -1510 276 265 59 0 chr11 91434182 91434250 -59349303 + MER45 DNA AcHobo 1510 1581 0 * 509 281 158 50 chr11 91434580 91435307 -59348246 - L1ME4a LINE L1 0 6121 5316 204 67 0 0 chr11 91437426 91437456 -59346097 + (CA)n Simple_repeat Simple_repeat 2 31 0 2024 142 0 0 chr11 91438052 91438340 -59345213 + AluSg SINE Alu 3 290 -20 180 0 0 0 chr11 91438347 91438367 -59345186 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2121 126 3 3 chr11 91438654 91438963 -59344590 + AluSc SINE Alu 1 309 0 1356 153 14 0 chr11 91440104 91440319 -59343234 - AluSq SINE Alu -17 296 79 271 57 0 0 chr11 91440419 91440454 -59343099 - Alu SINE Alu -267 35 1 414 39 0 0 chr11 91441299 91441351 -59342202 + (CA)n Simple_repeat Simple_repeat 2 53 0 466 380 5 0 chr11 91441483 91441675 -59341878 + MIR SINE MIR 14 206 -56 238 281 135 0 chr11 91441736 91441832 -59341721 + MIR SINE MIR 154 262 0 2021 151 0 0 chr11 91442079 91442377 -59341176 + AluSx SINE Alu 1 298 -14 276 315 46 54 chr11 91442826 91442956 -59340597 - L2 LINE L2 -22 3291 3163 340 283 182 25 chr11 91443162 91443321 -59340232 + MIR3 SINE MIR 5 188 -20 3091 130 59 4 chr11 91443747 91444253 -59339300 - L1PB4 LINE L1 -7 6149 5616 202 341 24 12 chr11 91444471 91444553 -59339000 + MIR SINE MIR 2 84 -178 2121 107 4 0 chr11 91445009 91445332 -59338221 - AluSx SINE Alu 0 324 1 21 36 0 0 chr11 91445333 91445361 -59338192 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 91445495 91445518 -59338035 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr11 91446506 91446526 -59337027 + (T)n Simple_repeat Simple_repeat 1 20 0 380 280 65 0 chr11 91447075 91447182 -59336371 - L2 LINE L2 -15 3298 3185 205 86 29 0 chr11 91448093 91448128 -59335425 - L2 LINE L2 0 3313 3278 240 154 0 0 chr11 91448808 91448860 -59334693 + (TA)n Simple_repeat Simple_repeat 1 52 0 192 179 0 0 chr11 91448901 91448940 -59334613 + (TA)n Simple_repeat Simple_repeat 1 39 0 476 111 12 0 chr11 91449363 91449444 -59334109 + (TTTTC)n Simple_repeat Simple_repeat 1 82 0 317 251 107 70 chr11 91449931 91450108 -59333445 + MIR SINE MIR 17 200 -62 351 202 169 121 chr11 91450108 91450356 -59333197 + MIR SINE MIR 3 262 0 396 282 41 81 chr11 91450359 91450750 -59332803 + L1M4b LINE L1 18 838 -6021 244 298 56 62 chr11 91450813 91450991 -59332562 + L1M4b LINE L1 852 1028 -5827 1063 223 85 59 chr11 91451259 91451716 -59331837 + L1M4b LINE L1 1212 1680 -5179 9499 185 80 46 chr11 91451740 91454810 -59328743 + L1MCa LINE L1 45 3229 -3197 1293 166 14 0 chr11 91454825 91455048 -59328505 + AluJb SINE Alu 85 310 -2 2128 240 33 12 chr11 91455055 91455727 -59327826 + L1MCa LINE L1 3229 3914 -2512 1074 178 4 39 chr11 91455738 91455969 -59327584 + L1MC1 LINE L1 6094 6316 -17 305 286 0 0 chr11 91455981 91456065 -59327488 + L1M4b LINE L1 1662 1745 -5110 12463 32 4 0 chr11 91456070 91458323 -59325230 - L1PA4 LINE L1 -2 6153 3893 1480 280 27 6 chr11 91458332 91458850 -59324703 - L1M4c LINE L1 -4660 1724 1196 339 233 105 15 chr11 91458856 91458989 -59324564 + L1M4b LINE L1 3111 3255 -3702 52 58 0 0 chr11 91459568 91459655 -59323898 + AT_rich Low_complexity Low_complexity 1 87 0 429 260 45 11 chr11 91460890 91461037 -59322516 - MIR SINE MIR -62 146 20 5642 104 9 4 chr11 91461678 91462495 -59321058 + L1PA11 LINE L1 5354 6174 0 324 388 15 8 chr11 91463572 91463706 -59319847 + MIR3 SINE MIR 34 168 -40 2337 106 0 0 chr11 91464940 91465251 -59318302 + AluY SINE Alu 1 311 0 281 273 0 23 chr11 91465920 91466008 -59317545 + MIR SINE MIR 177 262 0 243 320 13 0 chr11 91466407 91466485 -59317068 + L2 LINE L2 3194 3272 0 2784 116 302 2 chr11 91466701 91467227 -59316326 - LTR12 LTR ERV1 0 688 5 1014 196 50 42 chr11 91467257 91467642 -59315911 - pTR5 LTR ERV1 -1092 1346 731 2123 121 0 7 chr11 91467649 91467955 -59315598 - AluSc SINE Alu -5 304 1 237 270 191 0 chr11 91468064 91468153 -59315400 + MIR SINE MIR 48 153 -109 413 338 66 28 chr11 91468192 91468479 -59315074 + L2 LINE L2 3016 3313 0 2042 125 14 0 chr11 91469250 91469547 -59314006 + AluSx SINE Alu 1 301 -11 2077 127 13 0 chr11 91470565 91470872 -59312681 + AluSx SINE Alu 1 311 -1 357 186 247 0 chr11 91471928 91472025 -59311528 - MIR SINE MIR -68 194 74 26 74 0 0 chr11 91472203 91472257 -59311296 + AT_rich Low_complexity Low_complexity 1 54 0 608 310 74 35 chr11 91473211 91474156 -59309397 + L1ME2 LINE L1 793 1774 -4622 353 110 3 10 chr11 91474181 91474241 -59309312 - AluSq/x SINE Alu -159 144 97 7328 147 5 8 chr11 91474319 91475566 -59307987 - L1PA11 LINE L1 -1560 4586 3344 4498 121 15 8 chr11 91475550 91475614 -59307939 + L1PA11 LINE L1 4581 4643 -1531 * 2245 117 3 0 chr11 91475614 91475922 -59307631 - AluSg SINE Alu -1 309 1 4498 121 15 8 chr11 91475922 91477104 -59306449 + L1PA11 LINE L1 4643 5829 -345 2440 63 0 7 chr11 91477105 91477404 -59306149 + AluY SINE Alu 2 298 -13 2377 120 3 8 chr11 91477521 91477880 -59305673 + L1PA11 LINE L1 5814 6170 -4 2324 87 3 0 chr11 91477882 91478180 -59305373 - AluSp SINE Alu -11 302 4 3924 249 71 55 chr11 91478204 91478635 -59304918 + L1ME2 LINE L1 1883 2306 -3909 1728 157 54 7 chr11 91478635 91478929 -59304624 - AluSx SINE Alu -3 309 2 3924 249 71 55 chr11 91478929 91480629 -59302924 + L1ME2 LINE L1 2306 4021 -2194 2827 260 54 31 chr11 91480631 91480983 -59302570 + L1ME2 LINE L1 4165 4508 -1707 207 0 0 0 chr11 91480983 91481006 -59302547 + (TC)n Simple_repeat Simple_repeat 2 24 0 183 80 0 0 chr11 91481005 91481030 -59302523 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 2827 260 54 31 chr11 91481006 91481868 -59301685 + L1ME2 LINE L1 4508 5382 -833 274 132 113 0 chr11 91481878 91481931 -59301622 + L1MC4a LINE L1 6271 6329 -1479 423 221 0 0 chr11 91481962 91482048 -59301505 + MER4D LTR ERV1 634 719 -184 905 129 7 20 chr11 91482117 91482264 -59301289 + MER4D LTR ERV1 718 862 -41 2044 139 7 0 chr11 91482264 91482567 -59300986 - AluSx SINE Alu -7 305 1 1255 224 50 42 chr11 91482610 91483012 -59300541 + L1MC3 LINE L1 6304 6681 -1104 * 2146 245 14 13 chr11 91482995 91483546 -59300007 + L1MD3 LINE L1 7431 7982 -13 2834 212 36 58 chr11 91483562 91483926 -59299627 + L1ME2 LINE L1 5386 5757 -476 2022 139 0 0 chr11 91483926 91484213 -59299340 + AluSx SINE Alu 3 289 -23 2834 212 36 58 chr11 91484213 91484261 -59299292 + L1ME2 LINE L1 5757 5805 -428 1724 33 0 0 chr11 91484261 91484473 -59299080 + L1PA2 LINE L1 5944 6155 0 2834 212 36 58 chr11 91484473 91484918 -59298635 + L1ME2 LINE L1 5805 6225 -8 772 162 0 0 chr11 91485351 91485468 -59298085 - FLAM_C SINE Alu -16 117 1 644 206 44 61 chr11 91486240 91486420 -59297133 - MER69A DNA AcHobo 0 177 1 2052 101 3 10 chr11 91486593 91486881 -59296672 - AluSc SINE Alu -23 286 1 252 311 238 0 chr11 91487204 91487326 -59296227 + L2 LINE L2 3122 3272 0 418 311 134 30 chr11 91487351 91487461 -59296092 + MER5A DNA MER1_type 9 143 -46 2633 51 0 0 chr11 91487461 91487772 -59295781 + AluY SINE Alu 1 311 0 418 311 134 30 chr11 91487772 91487825 -59295728 + MER5A DNA MER1_type 143 189 0 334 242 71 10 chr11 91488105 91488204 -59295349 + L1MC4 LINE L1 6599 6703 -1339 300 158 0 0 chr11 91488327 91488384 -59295169 + (TA)n Simple_repeat Simple_repeat 2 58 0 315 319 0 0 chr11 91488385 91488476 -59295077 - L1MC4 LINE L1 -1338 6704 6614 247 248 16 0 chr11 91488481 91488602 -59294951 + (TA)n Simple_repeat Simple_repeat 1 123 0 312 225 45 22 chr11 91489480 91489569 -59293984 - MLT1I LTR MaLR 0 409 319 346 250 20 46 chr11 91489649 91489781 -59293772 - MLT1J1 LTR MaLR -271 139 10 720 226 100 59 chr11 91490073 91490514 -59293039 - MLT1E3 LTR MaLR -1 623 55 2274 140 28 17 chr11 91491340 91491698 -59291855 + THE1B LTR MaLR 3 364 0 400 308 13 0 chr11 91491768 91491924 -59291629 + MER103 DNA DNA 8 165 -1 2021 147 10 0 chr11 91492009 91492316 -59291237 + AluSx SINE Alu 1 310 -2 182 36 0 36 chr11 91492316 91492344 -59291209 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 605 175 0 48 chr11 91492345 91492534 -59291019 + GA-rich Low_complexity Low_complexity 1 180 0 369 269 88 77 chr11 91492735 91492822 -59290731 + MLT1J2 LTR MaLR 261 346 -104 1040 221 34 0 chr11 91492822 91493030 -59290523 + MER20 DNA MER1_type 1 215 -4 369 269 88 77 chr11 91493030 91493124 -59290429 + MLT1J2 LTR MaLR 346 444 -6 220 373 37 30 chr11 91493223 91493357 -59290196 + L2 LINE L2 2515 2649 -665 31 44 0 0 chr11 91493590 91493635 -59289918 + AT_rich Low_complexity Low_complexity 1 45 0 184 235 0 98 chr11 91494417 91494468 -59289085 + L2 LINE L2 3214 3259 -13 1669 168 0 69 chr11 91494892 91495225 -59288328 - AluJb SINE Alu 0 312 3 2155 101 18 0 chr11 91495312 91495590 -59287963 + AluSg SINE Alu 1 283 -27 21 0 0 0 chr11 91495590 91495611 -59287942 + AT_rich Low_complexity Low_complexity 1 21 0 188 359 141 0 chr11 91495865 91495957 -59287596 + L2 LINE L2 3168 3272 0 25 65 0 0 chr11 91495984 91496030 -59287523 + AT_rich Low_complexity Low_complexity 1 46 0 2177 101 10 3 chr11 91496156 91496454 -59287099 - AluSq SINE Alu -13 300 1 199 336 34 48 chr11 91496682 91496828 -59286725 - MIR SINE MIR -37 225 82 2093 128 3 0 chr11 91497679 91497976 -59285577 - AluSx SINE Alu -13 299 2 806 239 154 0 chr11 91498656 91498857 -59284696 - MIR SINE MIR -27 235 4 261 356 51 86 chr11 91498968 91499339 -59284214 + L2 LINE L2 2915 3272 0 21 36 0 0 chr11 91499875 91499903 -59283650 + AT_rich Low_complexity Low_complexity 1 28 0 2055 134 0 25 chr11 91499912 91500233 -59283320 - AluSq SINE Alu 0 313 1 2044 125 0 0 chr11 91500930 91501210 -59282343 + AluSc SINE Alu 3 282 -27 234 0 0 0 chr11 91501210 91501236 -59282317 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 194 390 37 18 chr11 91501263 91501427 -59282126 - L2 LINE L2 -190 3082 2916 202 325 79 24 chr11 91501633 91501759 -59281794 + L2 LINE L2 3168 3300 -13 2079 130 20 0 chr11 91501762 91502055 -59281498 + AluSg SINE Alu 1 299 -11 548 339 23 23 chr11 91502926 91503186 -59280367 + MIR SINE MIR 2 261 -1 300 284 119 8 chr11 91503653 91503787 -59279766 + MER5A DNA MER1_type 40 188 -1 * 435 271 98 0 chr11 91503669 91503791 -59279762 - MER5A DNA MER1_type -44 145 12 * 871 261 12 32 chr11 91503790 91504039 -59279514 + MIR SINE MIR 18 261 -1 359 234 65 71 chr11 91504393 91504577 -59278976 + L2 LINE L2 3118 3300 -13 743 257 82 59 chr11 91505163 91505552 -59278001 + MLT1J LTR MaLR 114 511 0 428 283 159 51 chr11 91506262 91506538 -59277015 + L2 LINE L2 3008 3313 0 1090 231 64 58 chr11 91506574 91506933 -59276620 + MLT1A2 LTR MaLR 3 363 -11 214 299 47 28 chr11 91507082 91507189 -59276364 + MIR SINE MIR 36 144 -64 3617 146 61 35 chr11 91507238 91507386 -59276167 + MER50 LTR ERV1 1 144 -590 1634 231 49 81 chr11 91507386 91508018 -59275535 + LTR9 LTR ERV1 1 612 0 3617 146 61 35 chr11 91508018 91508562 -59274991 + MER50 LTR ERV1 144 711 -23 4552 148 68 30 chr11 91508653 91509517 -59274036 + MER4D LTR ERV1 1 897 -6 766 192 0 0 chr11 91509546 91509676 -59273877 + FRAM SINE Alu 28 157 -19 551 241 76 25 chr11 91509921 91510079 -59273474 + MIR SINE MIR 69 234 -28 243 200 0 102 chr11 91510158 91510244 -59273309 - MIR SINE MIR -82 126 73 443 233 19 94 chr11 91510948 91511044 -59272509 + MER5B DNA MER1_type 32 113 -65 2216 92 0 7 chr11 91511044 91511348 -59272205 - AluSc SINE Alu -7 302 1 443 233 19 94 chr11 91511348 91511410 -59272143 + MER5B DNA MER1_type 113 178 0 2152 113 0 25 chr11 91511876 91512194 -59271359 + AluSg SINE Alu 1 310 0 1861 179 0 16 chr11 91512353 91512665 -59270888 + AluJb SINE Alu 1 307 -5 1798 150 14 4 chr11 91513438 91513749 -59269804 - AluSx SINE Alu 0 314 1 184 235 0 0 chr11 91513873 91513907 -59269646 - L2 LINE L2 -19 3294 3261 1081 305 61 28 chr11 91514174 91514669 -59268884 + MLT1J LTR MaLR 1 511 0 232 291 136 18 chr11 91514670 91514780 -59268773 - MIR SINE MIR -94 168 46 197 261 0 0 chr11 91515310 91515356 -59268197 + L2 LINE L2 2932 2977 -336 302 376 85 75 chr11 91515495 91515777 -59267776 - L2 LINE L2 -50 3222 2938 598 311 11 6 chr11 91516059 91516239 -59267314 - MER5A DNA MER1_type 0 189 9 201 39 0 0 chr11 91516613 91516639 -59266914 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 2202 119 0 0 chr11 91516678 91516973 -59266580 - AluSx SINE Alu -17 295 1 225 0 0 0 chr11 91517261 91517286 -59266267 + (TC)n Simple_repeat Simple_repeat 2 26 0 198 0 0 0 chr11 91517285 91517307 -59266246 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 937 208 15 0 chr11 91517405 91517607 -59265946 + MER3 DNA MER1_type 1 205 -4 551 259 161 12 chr11 91517808 91517970 -59265583 - MER5A DNA MER1_type 0 189 4 413 256 23 23 chr11 91518169 91518302 -59265251 - MIR SINE MIR -82 180 48 473 198 52 0 chr11 91518350 91518446 -59265107 + MER5A DNA MER1_type 9 109 -80 2021 113 0 14 chr11 91518449 91518741 -59264812 - AluSx SINE Alu -11 301 14 258 317 93 68 chr11 91520187 91520392 -59263161 + MLT1I LTR MaLR 98 307 -102 3358 181 15 10 chr11 91520403 91520988 -59262565 + Tigger7 DNA MER2_type 9 596 -137 482 235 0 0 chr11 91520994 91521079 -59262474 + Tigger7 DNA MER2_type 2403 2487 0 276 315 0 0 chr11 91521788 91521861 -59261692 + L3 LINE CR1 1498 1570 -7 1817 132 3 60 chr11 91522844 91523162 -59260391 + AluSx SINE Alu 1 300 -12 872 246 24 9 chr11 91523703 91523914 -59259639 + MIR SINE MIR 19 232 -30 368 291 101 9 chr11 91524351 91524607 -59258946 + MER102b DNA MER1_type 16 334 -7 376 221 13 0 chr11 91524620 91524697 -59258856 - MIR SINE MIR -3 259 182 209 271 135 42 chr11 91525647 91525743 -59257810 - L2 LINE L2 -10 3262 3158 2018 128 10 7 chr11 91525903 91526208 -59257345 - AluSc SINE Alu -3 306 1 1915 120 43 7 chr11 91526408 91526707 -59256846 - AluSg SINE Alu 0 310 1 458 281 103 22 chr11 91527551 91527736 -59255817 + MIR SINE MIR 63 262 0 350 272 63 51 chr11 91527903 91528061 -59255492 - MIR SINE MIR 0 262 103 26 0 0 0 chr11 91528944 91528970 -59254583 + AT_rich Low_complexity Low_complexity 1 26 0 1951 137 10 0 chr11 91529594 91529893 -59253660 - AluSx SINE Alu -10 302 1 192 158 0 0 chr11 91531071 91531109 -59252444 + (TG)n Simple_repeat Simple_repeat 1 38 0 770 227 91 0 chr11 91531729 91531905 -59251648 - MIR SINE MIR -50 212 21 1940 176 0 0 chr11 91531949 91532256 -59251297 - AluJb SINE Alu -5 307 1 269 348 71 7 chr11 91532565 91532706 -59250847 - MIR3 SINE MIR -2 206 57 357 250 32 154 chr11 91532717 91532997 -59250556 - MIR SINE MIR 0 262 17 1798 141 38 3 chr11 91533259 91533550 -59250003 + AluSq SINE Alu 1 301 -12 470 248 78 7 chr11 91534035 91534176 -59249377 - MIR SINE MIR -108 154 4 654 297 31 46 chr11 91534835 91535094 -59248459 - MIR SINE MIR -6 256 2 448 319 50 13 chr11 91536340 91536519 -59247034 - MIR SINE MIR -64 144 4 2050 165 3 0 chr11 91536803 91537155 -59246398 - L1PB1 LINE L1 -3 6148 5796 191 213 21 21 chr11 91537302 91537349 -59246204 + MIR SINE MIR 19 65 -143 188 227 147 13 chr11 91539119 91539194 -59244359 + MIR SINE MIR 32 116 -92 357 282 134 30 chr11 91539526 91539728 -59243825 - MIR SINE MIR 0 262 40 183 186 0 0 chr11 91539961 91540004 -59243549 + (TAG)n Simple_repeat Simple_repeat 3 45 0 255 319 176 7 chr11 91541351 91541486 -59242067 + MIR SINE MIR 30 185 -77 789 273 59 13 chr11 91542629 91542727 -59240826 + MIR SINE MIR 14 106 -156 2549 53 0 0 chr11 91542727 91543027 -59240526 - AluY SINE Alu -11 300 1 789 273 59 13 chr11 91543027 91543166 -59240387 + MIR SINE MIR 106 262 0 180 193 158 18 chr11 91543176 91543233 -59240320 + L2 LINE L2 3208 3272 0 415 390 13 7 chr11 91543440 91543594 -59239959 + L2 LINE L2 3117 3271 -1 227 200 0 0 chr11 91544227 91544267 -59239286 + L2 LINE L2 3254 3293 -20 190 211 154 0 chr11 91544492 91544544 -59239009 - L2 LINE L2 0 3272 3213 317 271 217 8 chr11 91545862 91545991 -59237562 - L2 LINE L2 0 3313 3158 207 0 0 0 chr11 91546216 91546239 -59237314 + (A)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr11 91547574 91547597 -59235956 + (A)n Simple_repeat Simple_repeat 1 23 0 248 320 87 60 chr11 91549578 91549624 -59233929 - L2 LINE L2 0 3313 3270 2315 94 3 3 chr11 91549624 91549921 -59233632 - AluY SINE Alu -14 297 1 248 320 87 60 chr11 91549921 91550024 -59233529 - L2 LINE L2 -43 3270 3160 337 253 13 13 chr11 91550705 91550784 -59232769 - L2 LINE L2 -1 3271 3193 811 288 47 14 chr11 91551091 91551369 -59232184 + L1ME1 LINE L1 44 330 -6066 1991 254 81 8 chr11 91551377 91552133 -59231420 + L1ME1 LINE L1 2581 3391 -2824 1136 177 60 39 chr11 91552224 91552456 -59231097 - AluJo SINE Alu -75 237 1 1508 234 45 33 chr11 91552457 91552966 -59230587 + L1ME1 LINE L1 3412 3926 -2289 775 77 0 10 chr11 91553067 91553193 -59230360 - L1PA7 LINE L1 0 6154 6044 5848 67 13 1 chr11 91553195 91554112 -59229441 + L1PA7 LINE L1 5098 6027 -127 930 246 60 15 chr11 91554158 91554569 -59228984 + L1ME1 LINE L1 3961 4493 -1722 283 79 0 0 chr11 91554574 91554612 -59228941 - AluSx SINE Alu -8 294 257 1424 135 0 0 chr11 91554613 91554813 -59228740 - AluSx SINE Alu -89 223 24 2220 61 6 74 chr11 91554960 91555286 -59228267 - AluY SINE Alu -7 304 1 3077 204 57 56 chr11 91555291 91555703 -59227850 + L1ME1 LINE L1 4919 5329 -906 1723 33 0 14 chr11 91555703 91555914 -59227639 - L1PA3 LINE L1 0 6155 5948 3077 204 57 56 chr11 91555914 91556773 -59226780 + L1ME1 LINE L1 5329 6183 -52 317 359 26 13 chr11 91557021 91557177 -59226376 + MIR3 SINE MIR 46 203 -5 597 188 163 31 chr11 91557552 91557712 -59225841 + MIR SINE MIR 61 241 -21 197 278 0 19 chr11 91557682 91557736 -59225817 + L2 LINE L2 3257 3309 -4 * 264 235 245 10 chr11 91557977 91558079 -59225474 + L2 LINE L2 3137 3262 -10 2091 110 25 0 chr11 91558227 91558509 -59225044 + AluSp SINE Alu 3 291 -22 279 325 48 32 chr11 91559065 91559191 -59224362 + L2 LINE L2 3141 3268 -4 577 261 67 46 chr11 91559325 91559563 -59223990 + L2 LINE L2 2205 2447 -867 627 224 20 20 chr11 91559816 91559968 -59223585 - MER20 DNA MER1_type -67 152 1 221 360 40 10 chr11 91560072 91560172 -59223381 + L2 LINE L2 3203 3305 -8 8395 31 18 15 chr11 91561328 91562919 -59220634 + L1PA3 LINE L1 4345 5930 -225 197 256 0 0 chr11 91565784 91565827 -59217726 - L2 LINE L2 -15 3298 3256 1712 292 122 28 chr11 91565958 91566870 -59216683 - L2 LINE L2 -95 3218 2198 266 335 69 69 chr11 91567246 91567434 -59216119 + MIR SINE MIR 20 207 -55 247 353 125 22 chr11 91568434 91568570 -59214983 + L2 LINE L2 3101 3250 -22 1524 186 32 4 chr11 91569028 91569307 -59214246 + AluJo SINE Alu 3 289 -23 216 236 18 18 chr11 91569376 91569431 -59214122 - MIR SINE MIR -15 247 193 421 179 26 0 chr11 91570203 91570281 -59213272 + MLT1J LTR MaLR 116 195 -316 569 305 39 13 chr11 91570927 91571081 -59212472 - MIR SINE MIR -97 165 8 761 260 137 0 chr11 91571321 91571548 -59212005 - MER69 DNA AcHobo -1944 582 325 186 236 146 0 chr11 91571594 91571649 -59211904 - L3b LINE CR1 -214 1369 1307 26 0 0 0 chr11 91572936 91572962 -59210591 + AT_rich Low_complexity Low_complexity 1 26 0 216 0 0 0 chr11 91574051 91574075 -59209478 + (ATG)n Simple_repeat Simple_repeat 2 25 0 5298 175 9 1 chr11 91574651 91575641 -59207912 + L1P LINE L1 3819 4816 -1330 212 184 122 0 chr11 91575791 91575840 -59207713 + L2 LINE L2 3216 3270 -2 291 326 61 8 chr11 91575970 91576102 -59207451 - MIR SINE MIR -51 211 73 644 263 111 41 chr11 91577381 91577841 -59205712 + HAL1 LINE L1 2002 2493 -14 2070 57 0 11 chr11 91577981 91578243 -59205310 + AluY SINE Alu 49 307 -4 521 305 49 8 chr11 91578328 91578574 -59204979 - L1ME3A LINE L1 -233 5937 5682 1187 275 34 20 chr11 91578707 91579603 -59203950 + L1ME LINE L1 4591 5547 -615 2171 118 67 14 chr11 91579604 91579950 -59203603 - THE1B LTR MaLR 0 364 1 1121 94 29 0 chr11 91579950 91580121 -59203432 - THE1B-int LTR MaLR 0 1580 1405 221 261 50 76 chr11 91580279 91580398 -59203155 + MIR3 SINE MIR 90 205 -3 422 282 10 0 chr11 91581198 91581301 -59202252 + MER5A DNA MER1_type 12 115 -74 365 336 70 19 chr11 91583250 91583464 -59200089 - L2 LINE L2 -195 3077 2853 499 246 145 29 chr11 91583569 91583776 -59199777 - L2 LINE L2 -3 3310 3080 1237 239 29 3 chr11 91584014 91584325 -59199228 - MER66A LTR ERV1 -46 432 114 1404 142 159 87 chr11 91584325 91584670 -59198883 - MSTA LTR MaLR 0 428 6 200 180 40 0 chr11 91584798 91584848 -59198705 + (TTA)n Simple_repeat Simple_repeat 1 52 0 248 189 0 133 chr11 91585049 91585139 -59198414 - L1MA8 LINE L1 -265 6026 5949 * 731 224 55 18 chr11 91585134 91585353 -59198200 + L1MA9 LINE L1 6046 6272 -40 234 299 117 0 chr11 91586330 91586407 -59197146 - MIR SINE MIR -57 151 66 592 282 57 46 chr11 91586666 91586946 -59196607 - MSTD LTR MaLR 0 428 78 797 181 122 11 chr11 91587691 91587879 -59195674 + MER63A DNA MER1_type 1 209 -1 671 311 5 5 chr11 91589224 91589414 -59194139 + MIR SINE MIR 15 204 -58 345 288 53 24 chr11 91589615 91589761 -59193792 - MIR SINE MIR -65 143 42 222 246 26 0 chr11 91589952 91590066 -59193487 + CT-rich Low_complexity Low_complexity 2 118 0 351 0 0 0 chr11 91590069 91590108 -59193445 + (CA)n Simple_repeat Simple_repeat 2 40 0 24 0 0 0 chr11 91590353 91590377 -59193176 + AT_rich Low_complexity Low_complexity 1 24 0 280 343 10 49 chr11 91590453 91590657 -59192896 + MIR SINE MIR 66 261 -1 294 349 46 20 chr11 91592685 91592837 -59190716 + MIR SINE MIR 57 212 -50 466 347 59 5 chr11 91592882 91593101 -59190452 - MIR SINE MIR -10 252 22 415 318 47 43 chr11 91593132 91593387 -59190166 + MIR SINE MIR 7 262 0 359 308 39 0 chr11 91594085 91594215 -59189338 + MIR SINE MIR 124 258 -4 1188 83 12 0 chr11 91595137 91595306 -59188247 + MER30 DNA MER1_type 1 171 -59 256 302 47 0 chr11 91595365 91595451 -59188102 - L2 LINE L2 -505 2809 2720 214 310 90 0 chr11 91595496 91595596 -59187957 - L2 LINE L2 -605 2709 2601 2189 120 0 7 chr11 91595719 91596028 -59187525 + AluSq SINE Alu 1 307 -6 2181 119 3 0 chr11 91596644 91596947 -59186606 + AluSx SINE Alu 1 304 -8 320 335 35 60 chr11 91597446 91597646 -59185907 + MIR SINE MIR 19 213 -49 221 243 171 71 chr11 91597912 91598052 -59185501 - MIR3 SINE MIR -48 160 7 1405 199 4 14 chr11 91598767 91599043 -59184510 - AluJo SINE Alu -15 297 25 653 308 97 62 chr11 91599714 91600549 -59183004 + L2 LINE L2 2446 3312 -1 215 363 123 46 chr11 91600859 91601248 -59182305 - L2 LINE L2 -43 3229 2811 315 96 0 0 chr11 91602874 91602926 -59180627 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 327 263 68 79 chr11 91603041 91603231 -59180322 + L1ME LINE L1 5397 5584 -537 195 404 18 9 chr11 91603233 91603347 -59180206 + L2 LINE L2 3154 3268 -4 365 265 78 30 chr11 91603369 91603535 -59180018 + L1ME LINE L1 5588 5761 -360 5838 58 12 31 chr11 91603584 91603708 -59179845 + L1PA7 LINE L1 5368 5493 -661 2313 58 24 10 chr11 91603708 91604003 -59179550 + AluY SINE Alu 7 305 -6 5838 58 12 31 chr11 91604003 91604676 -59178877 + L1PA7 LINE L1 5493 6150 -4 26 0 0 0 chr11 91604963 91604989 -59178564 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr11 91605103 91605127 -59178426 + AT_rich Low_complexity Low_complexity 1 24 0 1580 158 36 18 chr11 91605131 91605269 -59178284 + AluSx SINE Alu 1 135 -173 204 67 0 0 chr11 91605269 91605299 -59178254 + (CA)n Simple_repeat Simple_repeat 2 31 0 1580 158 36 18 chr11 91605299 91605463 -59178090 + AluSx SINE Alu 135 308 0 1361 204 65 9 chr11 91606833 91607156 -59176397 - MER58B DNA MER1_type 0 341 1 564 213 93 16 chr11 91607224 91607407 -59176146 - MER20B DNA MER1_type -1 782 586 273 167 0 0 chr11 91607913 91607967 -59175586 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 963 174 26 35 chr11 91608386 91608616 -59174937 + L1MA6 LINE L1 6073 6300 0 1068 268 88 15 chr11 91608700 91609096 -59174457 - MER20B DNA MER1_type -290 493 69 3783 135 12 12 chr11 91609127 91609726 -59173827 + L1PA15 LINE L1 5448 6046 -119 4562 120 119 28 chr11 91609734 91609784 -59173769 - pTR5 LTR ERV1 0 2438 2394 1939 92 0 0 chr11 91609784 91610046 -59173507 + AluY SINE Alu 44 305 -6 4562 120 119 28 chr11 91610046 91611425 -59172128 - pTR5 LTR ERV1 -44 2394 743 567 191 0 9 chr11 91611425 91611540 -59172013 + L1PA15 LINE L1 6049 6162 -3 355 284 112 0 chr11 91611789 91611905 -59171648 + MIR3 SINE MIR 62 190 -18 295 329 110 0 chr11 91612611 91612766 -59170787 + MIR SINE MIR 67 238 -24 486 267 97 41 chr11 91613633 91613828 -59169725 - MIR SINE MIR 0 262 57 321 297 46 51 chr11 91613894 91614089 -59169464 - MIR3 SINE MIR -9 199 6 378 241 112 0 chr11 91614394 91614510 -59169043 - MIR SINE MIR -10 252 124 1578 160 26 32 chr11 91614514 91614826 -59168727 + AluSg SINE Alu 1 310 0 30 0 0 0 chr11 91615105 91615135 -59168418 + AT_rich Low_complexity Low_complexity 1 30 0 2159 95 3 7 chr11 91615147 91615432 -59168121 - AluSc SINE Alu -25 284 1 1988 152 7 0 chr11 91615434 91615737 -59167816 - AluSx SINE Alu -7 305 1 333 172 0 0 chr11 91615808 91615872 -59167681 + GA-rich Low_complexity Low_complexity 2 65 0 722 146 19 13 chr11 91615891 91616049 -59167504 + GA-rich Low_complexity Low_complexity 4 162 0 263 328 8 0 chr11 91617018 91617143 -59166410 + (TA)n Simple_repeat Simple_repeat 1 126 0 25 31 0 0 chr11 91618136 91618168 -59165385 + AT_rich Low_complexity Low_complexity 1 32 0 244 325 25 50 chr11 91621103 91621223 -59162330 + L2 LINE L2 3156 3272 0 25 0 0 0 chr11 91621280 91621305 -59162248 + AT_rich Low_complexity Low_complexity 1 25 0 518 300 51 78 chr11 91623509 91623879 -59159674 + L2 LINE L2 2531 2890 -424 220 254 0 45 chr11 91624138 91624205 -59159348 + L2 LINE L2 2995 3058 -214 23 0 0 0 chr11 91624868 91624891 -59158662 + AT_rich Low_complexity Low_complexity 1 23 0 2102 133 7 0 chr11 91624919 91625212 -59158341 - AluSx SINE Alu -17 295 1 11452 203 50 21 chr11 91625356 91627529 -59156024 - L1MB1 LINE L1 0 6404 4295 1563 84 4 25 chr11 91627529 91627766 -59155787 - L1PA6 LINE L1 0 6154 5923 11452 203 50 21 chr11 91627766 91629435 -59154118 - L1MB1 LINE L1 -2109 4295 2407 1759 104 122 7 chr11 91629435 91629705 -59153848 - AluSg1 SINE Alu -8 301 1 11452 203 50 21 chr11 91629705 91630147 -59153406 - L1MB1 LINE L1 -3997 2407 1979 314 124 25 74 chr11 91630549 91630670 -59152883 + GA-rich Low_complexity Low_complexity 2 116 0 278 283 76 33 chr11 91631230 91631322 -59152231 - L2 LINE L2 -5 3308 3213 236 342 0 66 chr11 91631426 91631502 -59152051 + L2 LINE L2 3112 3182 -90 2372 149 8 0 chr11 91631617 91631985 -59151568 + THE1C LTR MaLR 1 371 -4 238 289 0 0 chr11 91631992 91632044 -59151509 + MIR SINE MIR 53 104 -104 896 250 48 4 chr11 91632196 91632424 -59151129 + MIR SINE MIR 10 247 -15 240 324 140 22 chr11 91632659 91632838 -59150715 - MIR SINE MIR -4 258 59 309 321 167 37 chr11 91632956 91633118 -59150435 - MIR SINE MIR -78 184 2 644 297 75 29 chr11 91633517 91633756 -59149797 - MIR SINE MIR -6 256 7 201 108 0 0 chr11 91633764 91633801 -59149752 + (A)n Simple_repeat Simple_repeat 1 37 0 2531 52 3 3 chr11 91634527 91634834 -59148719 - AluY SINE Alu -4 307 1 648 86 21 0 chr11 91634834 91634927 -59148626 - AluSg/x SINE Alu -10 299 205 315 50 0 0 chr11 91634927 91634967 -59148586 - Alu SINE Alu -259 40 1 468 308 105 18 chr11 91636929 91637205 -59146348 - L2 LINE L2 0 3313 3014 375 191 12 12 chr11 91637445 91637607 -59145946 + GA-rich Low_complexity Low_complexity 1 162 0 680 264 19 31 chr11 91637954 91638182 -59145371 + MIR SINE MIR 22 244 -18 22 0 0 0 chr11 91638311 91638333 -59145220 + AT_rich Low_complexity Low_complexity 1 22 0 229 233 0 121 chr11 91639421 91639537 -59144016 + MIR SINE MIR 81 182 -80 310 214 168 8 chr11 91639699 91639830 -59143723 - L1ME4a LINE L1 -26 6095 5944 275 275 47 61 chr11 91640793 91640872 -59142681 + MIR SINE MIR 74 153 -109 1770 114 65 0 chr11 91640872 91641163 -59142390 + AluSg SINE Alu 3 310 0 275 275 47 61 chr11 91641163 91641213 -59142340 + MIR SINE MIR 153 202 -60 315 287 126 7 chr11 91641596 91641739 -59141814 - MIR SINE MIR -8 254 95 310 275 66 97 chr11 91642872 91643028 -59140525 - MIR SINE MIR -67 141 16 232 277 0 0 chr11 91643593 91643658 -59139895 + (TGG)n Simple_repeat Simple_repeat 1 65 0 418 241 84 24 chr11 91643782 91643948 -59139605 - MER5B DNA MER1_type -2 176 1 22 0 0 0 chr11 91644383 91644405 -59139148 + AT_rich Low_complexity Low_complexity 1 22 0 300 274 0 24 chr11 91644897 91644981 -59138572 + MIR SINE MIR 141 222 -40 232 293 67 142 chr11 91645304 91645543 -59138010 - L2 LINE L2 -87 3185 2965 392 379 35 0 chr11 91645761 91645906 -59137647 - L2 LINE L2 0 3272 3123 527 303 104 14 chr11 91646527 91646748 -59136805 + MIR SINE MIR 22 262 0 186 43 0 0 chr11 91647956 91647979 -59135574 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 894 271 9 0 chr11 91648057 91648278 -59135275 + MER58A DNA MER1_type 1 223 -1 23 0 0 0 chr11 91648381 91648404 -59135149 + AT_rich Low_complexity Low_complexity 1 23 0 208 418 60 0 chr11 91648607 91648741 -59134812 + L2 LINE L2 3122 3263 -9 337 264 0 55 chr11 91648780 91648871 -59134682 - MIR SINE MIR -157 105 20 1888 113 0 0 chr11 91648908 91649165 -59134388 - AluSc SINE Alu -14 295 39 217 340 32 32 chr11 91649202 91649296 -59134257 + MIR3 SINE MIR 113 206 -2 258 355 89 0 chr11 91649671 91649795 -59133758 - L3 LINE CR1 -166 1411 1277 312 280 13 0 chr11 91649840 91649915 -59133638 + MLT1J LTR MaLR 111 186 -325 519 297 99 17 chr11 91650201 91650433 -59133120 + MIR SINE MIR 1 251 -11 371 303 28 87 chr11 91650491 91650709 -59132844 - MIR SINE MIR -29 233 29 251 232 61 40 chr11 91650826 91650925 -59132628 + MER103 DNA DNA 52 152 -14 2185 169 53 20 chr11 91650938 91651387 -59132166 + MLT1C LTR MaLR 4 467 0 232 299 0 30 chr11 91651813 91651880 -59131673 - MER91 DNA MER1_type -79 111 47 451 153 0 14 chr11 91652094 91652166 -59131387 + FLAM SINE Alu 51 121 -22 2416 46 0 26 chr11 91652223 91652530 -59131023 + AluY SINE Alu 1 299 -12 248 181 69 42 chr11 91652921 91652993 -59130560 + MIR SINE MIR 179 252 -10 318 265 72 60 chr11 91653808 91653974 -59129579 + MIR SINE MIR 88 255 -7 369 285 140 10 chr11 91654528 91654709 -59128844 + MIR SINE MIR 16 218 -44 810 206 19 12 chr11 91654796 91654999 -59128554 + MLT2F LTR ERVL 5 254 -409 252 322 204 18 chr11 91655247 91655576 -59127977 + L2 LINE L2 1546 1935 -1379 662 325 21 17 chr11 91655596 91655885 -59127668 + L2 LINE L2 2310 2599 -715 210 366 57 80 chr11 91656048 91656400 -59127153 + L2 LINE L2 2882 3225 -47 231 330 35 17 chr11 91657481 91657596 -59125957 - L2 LINE L2 -224 3048 2932 1921 177 46 4 chr11 91657609 91657962 -59125591 + MLT1A1 LTR MaLR 2 363 -2 219 271 51 17 chr11 91658178 91658237 -59125316 + L2 LINE L2 3246 3306 -7 369 217 14 0 chr11 91658606 91658675 -59124878 - L2 LINE L2 -4 3268 3199 864 281 23 16 chr11 91658755 91659011 -59124542 + MIR SINE MIR 2 259 -3 417 329 60 64 chr11 91659089 91659545 -59124008 - L2 LINE L2 -194 3119 2654 249 226 137 39 chr11 91659572 91659674 -59123879 - MIR SINE MIR -70 192 81 213 156 22 44 chr11 91659877 91659922 -59123631 + L2 LINE L2 3229 3272 0 22 56 0 0 chr11 91660127 91660163 -59123390 + AT_rich Low_complexity Low_complexity 1 36 0 189 0 0 0 chr11 91660691 91660712 -59122841 + (T)n Simple_repeat Simple_repeat 1 21 0 480 243 41 59 chr11 91661099 91661268 -59122285 - MIR SINE MIR -49 213 48 184 211 0 39 chr11 91662678 91662730 -59120823 + L2 LINE L2 2988 3037 -235 599 283 87 11 chr11 91662750 91663015 -59120538 + L1MEc LINE L1 77 361 -6035 2616 255 139 37 chr11 91663098 91664482 -59119071 + L1MEc LINE L1 847 2371 -4025 21057 28 1 0 chr11 91664836 91668143 -59115410 - L1PA3 LINE L1 0 6155 2848 11441 35 1 1 chr11 91668143 91669531 -59114022 + L1PA3 LINE L1 1490 2877 -3269 1096 223 5 14 chr11 91669550 91669761 -59113792 - MER58A DNA MER1_type -3 221 13 1478 196 108 33 chr11 91669810 91670208 -59113345 + MSTC LTR MaLR 1 428 0 446 294 71 14 chr11 91670921 91671132 -59112421 + MIR SINE MIR 35 257 -5 392 262 75 0 chr11 91671739 91671846 -59111707 - MIR SINE MIR -66 196 82 443 286 146 11 chr11 91672144 91672322 -59111231 - MIR SINE MIR -10 252 51 1511 174 56 21 chr11 91673587 91673875 -59109678 - AluJb SINE Alu -14 298 1 204 67 0 0 chr11 91675577 91675607 -59107946 + (A)n Simple_repeat Simple_repeat 1 30 0 2312 105 0 0 chr11 91675615 91675921 -59107632 + AluSx SINE Alu 1 306 -6 1554 111 35 18 chr11 91676699 91676925 -59106628 - MER30 DNA MER1_type 0 230 1 208 355 91 16 chr11 91677526 91677647 -59105906 + L2 LINE L2 3184 3313 0 21 0 0 0 chr11 91678681 91678702 -59104851 + AT_rich Low_complexity Low_complexity 1 21 0 330 268 91 45 chr11 91679074 91679294 -59104259 + L1MC5 LINE L1 6992 7221 -740 231 269 124 74 chr11 91679448 91679827 -59103726 + L1MC5 LINE L1 7272 7669 -292 1113 299 62 78 chr11 91680063 91680377 -59103176 + L1MEd LINE L1 366 684 -5732 1478 175 0 150 chr11 91680377 91680811 -59102742 + MLT1A2 LTR MaLR 2 370 -4 1113 299 62 78 chr11 91680811 91680976 -59102577 + L1MEd LINE L1 684 850 -5566 1904 122 0 64 chr11 91680976 91681304 -59102249 + AluSc SINE Alu 1 307 -2 1113 299 62 78 chr11 91681304 91681887 -59101666 + L1MEd LINE L1 850 1412 -5004 256 326 42 35 chr11 91682052 91682196 -59101357 + L1MEd LINE L1 1409 1553 -4863 436 299 108 32 chr11 91682206 91682457 -59101096 + L1MEd LINE L1 1417 1686 -4740 643 275 115 26 chr11 91682592 91683166 -59100387 + L1MEd LINE L1 2915 3539 -2887 436 307 97 43 chr11 91683346 91683883 -59099670 + L1MEd LINE L1 3559 4124 -2302 238 301 43 21 chr11 91684315 91684408 -59099145 - MLT1K LTR MaLR -492 96 2 336 65 0 0 chr11 91685165 91685211 -59098342 + Alu SINE Alu 247 292 -8 1710 221 53 99 chr11 91685643 91686251 -59097302 + MLT1E LTR MaLR 17 593 0 248 363 117 23 chr11 91686746 91686917 -59096636 + L3 LINE CR1 1388 1574 -3 22 0 0 0 chr11 91686984 91687006 -59096547 + AT_rich Low_complexity Low_complexity 1 22 0 279 373 49 0 chr11 91687928 91688030 -59095523 + L2 LINE L2 3201 3307 -6 233 221 95 32 chr11 91688558 91688653 -59094900 - HAL1 LINE L1 -179 2328 2228 257 290 90 7 chr11 91688739 91688894 -59094659 - HAL1b LINE L1 -433 915 748 391 274 62 0 chr11 91689517 91689630 -59093923 + MLT1E LTR MaLR 44 163 -430 26 82 0 0 chr11 91689686 91689747 -59093806 + AT_rich Low_complexity Low_complexity 1 61 0 22 0 0 0 chr11 91691753 91691775 -59091778 + AT_rich Low_complexity Low_complexity 1 22 0 483 224 212 39 chr11 91693472 91693731 -59089822 + L1MC4a LINE L1 5736 6039 -1769 349 281 94 8 chr11 91694313 91694441 -59089112 + MIR SINE MIR 108 246 -16 572 219 43 194 chr11 91694915 91695194 -59088359 - MIR SINE MIR -10 252 16 345 250 102 0 chr11 91695804 91695932 -59087621 - L1ME3A LINE L1 -205 5965 5825 2086 121 31 0 chr11 91696213 91696502 -59087051 - AluSx SINE Alu -12 300 3 342 244 8 47 chr11 91696589 91696716 -59086837 - L1MDa LINE L1 -4512 2028 1907 470 242 97 59 chr11 91696919 91696952 -59086601 - L1MDa LINE L1 -4910 1620 1590 2126 122 24 0 chr11 91696952 91697247 -59086306 - AluSg SINE Alu -8 302 1 470 242 97 59 chr11 91697247 91697634 -59085919 - L1MDa LINE L1 -4940 1590 1184 1296 192 0 4 chr11 91697732 91697961 -59085592 - AluJb SINE Alu 0 312 85 386 248 44 0 chr11 91698010 91698123 -59085430 + L1MA8 LINE L1 6173 6290 -1 291 282 24 12 chr11 91698150 91698235 -59085318 - L1MDa LINE L1 -5982 548 463 21 0 0 0 chr11 91698477 91698498 -59085055 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr11 91698736 91698756 -59084797 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 644 304 135 9 chr11 91699693 91700042 -59083511 + MLT1J2 LTR MaLR 15 407 -43 1881 131 36 4 chr11 91701746 91702044 -59081509 - AluSx SINE Alu 0 307 1 223 305 157 43 chr11 91702653 91702798 -59080755 - MIR3 SINE MIR -67 141 2 186 143 0 0 chr11 91703241 91703276 -59080277 + (CAT)n Simple_repeat Simple_repeat 1 35 0 204 40 0 0 chr11 91703279 91703304 -59080249 + (TCC)n Simple_repeat Simple_repeat 3 27 0 498 302 112 6 chr11 91703314 91703483 -59080070 - MIR SINE MIR -4 258 72 476 249 39 97 chr11 91703584 91703841 -59079712 + L2 LINE L2 3070 3311 -2 1022 112 28 0 chr11 91704063 91704206 -59079347 - AluY SINE Alu -65 246 100 2295 69 3 13 chr11 91704925 91705229 -59078324 + AluY SINE Alu 1 301 -10 272 375 61 18 chr11 91705712 91705992 -59077561 + L2 LINE L2 2487 2778 -536 746 311 104 56 chr11 91706386 91706903 -59076650 + L2 LINE L2 2712 3259 -13 359 315 72 39 chr11 91707855 91708134 -59075419 - L2 LINE L2 -1 3312 3025 222 333 8 49 chr11 91708240 91708363 -59075190 + L2 LINE L2 2543 2660 -654 1640 173 0 69 chr11 91708632 91708967 -59074586 - AluJb SINE Alu 0 312 1 215 271 0 17 chr11 91709186 91709245 -59074308 + GA-rich Low_complexity Low_complexity 3 60 0 474 270 24 8 chr11 91710037 91710163 -59073390 - MIR3 SINE MIR -50 158 31 899 29 0 0 chr11 91710681 91710785 -59072768 - L1PA5 LINE L1 -9 6145 6042 370 335 166 28 chr11 91711148 91711473 -59072080 + L2 LINE L2 2556 2925 -389 435 285 35 14 chr11 91712432 91712576 -59070977 - MIR SINE MIR -48 214 68 273 282 26 39 chr11 91712554 91712632 -59070921 - MIR SINE MIR -88 120 44 * 2271 112 3 0 chr11 91712902 91713207 -59070346 - AluSq SINE Alu -7 306 1 188 226 16 0 chr11 91714438 91714500 -59069053 + (ATG)n Simple_repeat Simple_repeat 2 64 0 448 288 53 0 chr11 91714779 91714911 -59068642 - MIR SINE MIR -71 191 53 445 266 89 0 chr11 91716449 91716573 -59066980 + MIR SINE MIR 97 231 -31 593 298 76 17 chr11 91718038 91718276 -59065277 + MIR SINE MIR 11 262 0 496 331 51 28 chr11 91718886 91719140 -59064413 + MIR SINE MIR 2 261 -1 226 321 0 0 chr11 91719426 91719482 -59064071 + L2 LINE L2 3217 3272 0 469 315 60 51 chr11 91719497 91719732 -59063821 + MIR SINE MIR 14 250 -12 476 301 145 5 chr11 91720722 91720908 -59062645 - MIR SINE MIR -50 212 1 263 322 99 0 chr11 91721315 91721436 -59062117 + L2 LINE L2 3180 3312 -1 259 292 0 0 chr11 91721446 91721511 -59062042 + GA-rich Low_complexity Low_complexity 2 66 0 2797 22 0 0 chr11 91722984 91723295 -59060258 - AluYa5 SINE Alu 0 311 1 1630 185 60 10 chr11 91723297 91723632 -59059921 + MLT1A1 LTR MaLR 13 365 0 743 237 58 0 chr11 91723660 91723833 -59059720 + MER5A DNA MER1_type 7 189 0 411 355 43 41 chr11 91723833 91724271 -59059282 + L2 LINE L2 2618 3057 -215 888 127 19 13 chr11 91725458 91725616 -59057937 + L1MB4 LINE L1 6021 6179 -1 826 219 56 11 chr11 91726813 91726991 -59056562 - MIR SINE MIR -69 193 8 181 289 7 127 chr11 91728552 91728694 -59054859 + MIR SINE MIR 22 146 -116 846 276 53 4 chr11 91728699 91728945 -59054608 + MIR SINE MIR 5 262 0 282 206 0 0 chr11 91729541 91729604 -59053949 + GA-rich Low_complexity Low_complexity 4 66 0 292 270 125 25 chr11 91729637 91729801 -59053752 - MIR SINE MIR -55 207 18 1511 209 32 49 chr11 91730727 91731096 -59052457 - MLT1A2 LTR MaLR -11 363 1 248 310 58 11 chr11 91731539 91731626 -59051927 - L2 LINE L2 -39 3274 3184 257 262 95 24 chr11 91731669 91731795 -59051758 - MIR SINE MIR -124 138 4 439 274 91 87 chr11 91732362 91732484 -59051069 + MIR SINE MIR 16 141 -121 2218 113 0 10 chr11 91732484 91732794 -59050759 + AluSc SINE Alu 1 307 -2 439 274 91 87 chr11 91732794 91732901 -59050652 + MIR SINE MIR 141 246 -16 24 0 0 0 chr11 91733429 91733453 -59050100 + AT_rich Low_complexity Low_complexity 1 24 0 185 234 0 0 chr11 91734050 91734097 -59049456 - MIR SINE MIR -44 218 172 600 244 35 6 chr11 91734121 91734293 -59049260 + MER104 DNA MER2_type 2 178 -2 319 375 105 25 chr11 91734307 91734767 -59048786 - L2 LINE L2 -35 3237 2742 276 291 99 43 chr11 91734745 91734886 -59048667 - MIR SINE MIR -34 174 26 * 1631 177 20 14 chr11 91735073 91735367 -59048186 + AluSx SINE Alu 1 296 -16 1769 166 7 13 chr11 91736165 91736466 -59047087 + AluJb SINE Alu 3 301 -11 338 269 166 21 chr11 91736787 91736932 -59046621 + MIR SINE MIR 42 207 -55 195 42 0 0 chr11 91737246 91737270 -59046283 + (A)n Simple_repeat Simple_repeat 1 24 0 27 29 0 0 chr11 91737591 91737625 -59045928 + AT_rich Low_complexity Low_complexity 1 34 0 35 0 0 0 chr11 91740786 91740821 -59042732 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr11 91741301 91741322 -59042231 + (CAA)n Simple_repeat Simple_repeat 1 21 0 269 306 51 31 chr11 91741403 91741501 -59042052 + L2 LINE L2 3173 3272 0 318 195 115 11 chr11 91741548 91741635 -59041918 + MIR3 SINE MIR 111 206 -2 180 182 0 0 chr11 91743004 91743037 -59040516 - L3b LINE CR1 -114 1469 1437 1418 191 0 23 chr11 91743460 91743746 -59039807 - AluJo SINE Alu 0 314 35 3675 108 4 2 chr11 91744124 91744661 -59038892 - L1P LINE L1 -1172 4974 4437 2438 60 24 62 chr11 91744661 91745027 -59038526 + L1PA7 LINE L1 5786 6141 -13 294 29 0 0 chr11 91745030 91745065 -59038488 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 235 235 0 0 chr11 91745560 91745611 -59037942 - L1MC4 LINE L1 -65 7977 7927 235 296 80 0 chr11 91745735 91745823 -59037730 - L1ME LINE L1 -462 5659 5565 497 229 124 0 chr11 91745936 91746163 -59037390 - L1M3 LINE L1 -733 5447 5199 2132 106 28 31 chr11 91746362 91746721 -59036832 + L1PA11 LINE L1 5816 6173 -1 246 128 0 0 chr11 91746797 91746836 -59036717 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2135 113 7 29 chr11 91747129 91747439 -59036114 - AluSq SINE Alu -10 303 1 227 269 87 58 chr11 91747721 91747825 -59035728 - HAL1 LINE L1 -911 1596 1490 455 292 78 67 chr11 91747908 91747962 -59035591 - L1MEd LINE L1 -4871 1248 1196 2571 46 0 0 chr11 91747962 91748267 -59035286 + AluY SINE Alu 1 305 -6 455 292 78 67 chr11 91748267 91748915 -59034638 - L1MEd LINE L1 -4923 1196 538 264 333 67 20 chr11 91749004 91749154 -59034399 - L1MEd LINE L1 -5713 406 250 362 267 30 30 chr11 91749526 91749657 -59033896 + MIR SINE MIR 132 262 0 216 0 0 0 chr11 91749990 91750014 -59033539 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 204 329 24 12 chr11 91751134 91751216 -59032337 + L2 LINE L2 3231 3313 0 228 169 0 62 chr11 91751481 91751546 -59032007 - MER5C DNA MER1_type -35 289 229 437 202 71 38 chr11 91751990 91752173 -59031380 + MER113 DNA MER1_type? 43 231 -290 354 319 71 7 chr11 91752349 91752490 -59031063 - MIR SINE MIR -66 196 47 380 323 95 32 chr11 91753023 91753212 -59030341 + L2 LINE L2 3093 3293 -20 548 82 24 0 chr11 91753279 91753364 -59030189 + L1PA16 LINE L1 6071 6157 -9 702 270 104 43 chr11 91753928 91754273 -59029280 - L2 LINE L2 0 3313 2948 346 92 15 31 chr11 91754456 91754521 -59029032 + (GGA)n Simple_repeat Simple_repeat 3 66 0 1517 286 49 47 chr11 91754551 91755103 -59028450 - L2 LINE L2 -414 2900 2348 501 231 120 0 chr11 91755107 91755224 -59028329 + FLAM_A SINE Alu 2 132 -1 558 168 80 29 chr11 91755267 91755407 -59028146 + L1MA4 LINE L1 6157 6298 -2 520 278 294 5 chr11 91755420 91755614 -59027939 - L2 LINE L2 -952 2362 2113 542 306 6 11 chr11 91755676 91755856 -59027697 - L2 LINE L2 -2227 1087 909 484 288 123 23 chr11 91755922 91756141 -59027412 - MIR SINE MIR -8 254 14 1890 249 48 21 chr11 91756719 91757325 -59026228 + L1ME1 LINE L1 5539 6160 -6 372 272 56 8 chr11 91758714 91758839 -59024714 - MIR SINE MIR -1 261 131 * 454 310 245 26 chr11 91758814 91759198 -59024355 + L2 LINE L2 2832 3299 -14 345 285 81 24 chr11 91759534 91759657 -59023896 - L2 LINE L2 0 3272 3143 408 306 77 27 chr11 91760536 91760833 -59022720 - L1ME LINE L1 -399 5722 5411 841 275 57 9 chr11 91761180 91761409 -59022144 - MIR SINE MIR -10 252 13 321 375 45 5 chr11 91761442 91761642 -59021911 - L1ME LINE L1 -1197 4949 4742 21 36 0 0 chr11 91762044 91762072 -59021481 + AT_rich Low_complexity Low_complexity 1 28 0 261 300 107 50 chr11 91762212 91762688 -59020865 - L1ME LINE L1 -2013 4133 3631 343 301 97 0 chr11 91763045 91763148 -59020405 - L2 LINE L2 0 3313 3201 311 309 61 61 chr11 91763492 91763722 -59019831 - MIR SINE MIR -27 235 6 25 0 0 0 chr11 91763787 91763812 -59019741 + AT_rich Low_complexity Low_complexity 1 25 0 370 308 67 10 chr11 91764149 91764253 -59019300 + L2 LINE L2 3160 3269 -3 355 319 17 17 chr11 91764352 91764471 -59019082 + MIR3 SINE MIR 89 207 -1 217 350 104 18 chr11 91765370 91765533 -59018020 - MIR3 SINE MIR -17 191 15 230 383 75 0 chr11 91765962 91766056 -59017497 + L2 LINE L2 3145 3245 -27 234 359 71 41 chr11 91766443 91766613 -59016940 - L2 LINE L2 -8 3264 3090 215 362 21 11 chr11 91766707 91766801 -59016752 + MIR SINE MIR 38 132 -76 * 243 336 150 36 chr11 91766797 91767017 -59016536 + MIR SINE MIR 18 262 0 205 284 14 0 chr11 91767083 91767157 -59016396 + (TA)n Simple_repeat Simple_repeat 1 75 0 427 304 17 13 chr11 91768342 91768579 -59014974 + L1MC4a LINE L1 4824 5061 -1085 1207 292 53 14 chr11 91768736 91769168 -59014385 + L1MC4a LINE L1 5261 5709 -2099 989 282 56 15 chr11 91769163 91769500 -59014053 + L1MC4a LINE L1 6434 6784 -1024 * 267 231 15 15 chr11 91769507 91769572 -59013981 + L1MC4 LINE L1 6948 7012 -1030 377 237 26 0 chr11 91769763 91769877 -59013676 + L1MC4 LINE L1 7925 8041 -1 238 267 65 46 chr11 91769904 91770121 -59013432 + L1MC5 LINE L1 7479 7699 -262 249 264 0 0 chr11 91770140 91770212 -59013341 + L1MC4 LINE L1 7864 7935 -107 2095 151 17 9 chr11 91772153 91772497 -59011056 - MER7A DNA MER2_type -1 345 1 244 365 176 18 chr11 91772664 91772886 -59010667 - L2 LINE L2 -2 3270 3014 531 288 14 51 chr11 91773484 91773699 -59009854 + MER66-int LTR ERV1 2950 3156 -3520 3831 171 50 21 chr11 91774111 91774977 -59008576 + MER66-int LTR ERV1 938 2270 0 446 296 53 58 chr11 91775322 91775511 -59008042 - MIR3 SINE MIR -4 204 17 341 276 149 9 chr11 91776888 91777037 -59006516 - MIR3 SINE MIR -63 145 1 263 125 321 0 chr11 91777920 91777976 -59005577 - MER63 DNA MER1_type -308 753 680 478 395 21 0 chr11 91778081 91778271 -59005282 + MER91A DNA MER1_type 3 196 0 326 312 46 9 chr11 91778448 91778557 -59004996 - MIR SINE MIR -121 141 29 1162 223 148 42 chr11 91778916 91779327 -59004226 + MLT1G3 LTR MaLR 81 583 -7 276 246 0 0 chr11 91779374 91779431 -59004122 + L2 LINE L2 3256 3312 -1 1976 155 0 0 chr11 91779539 91779842 -59003711 + AluSp SINE Alu 1 303 -10 738 256 62 24 chr11 91780225 91780436 -59003117 - MIR SINE MIR -26 236 18 233 314 136 0 chr11 91780514 91780632 -59002921 + MIR SINE MIR 115 248 -14 529 250 128 20 chr11 91780660 91780963 -59002590 - L1ME4a LINE L1 -182 5939 5598 180 111 0 0 chr11 91782864 91782891 -59000662 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 242 294 64 28 chr11 91782932 91783041 -59000512 + MIR SINE MIR 24 136 -126 1962 122 59 0 chr11 91783078 91783365 -59000188 - AluSx SINE Alu -8 304 1 347 269 82 22 chr11 91783365 91783499 -59000054 + MIR SINE MIR 121 262 0 379 314 45 26 chr11 91783741 91783897 -58999656 + MIR SINE MIR 99 257 -5 180 0 0 0 chr11 91784489 91784509 -58999044 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 295 309 110 7 chr11 91784792 91784928 -58998625 + MIR SINE MIR 63 212 -50 205 214 57 14 chr11 91785152 91785222 -58998331 + (TGAA)n Simple_repeat Simple_repeat 1 73 0 2159 101 7 0 chr11 91785479 91785776 -58997777 + AluSx SINE Alu 3 301 -11 597 306 53 58 chr11 91786397 91786796 -58996757 + MLT1I LTR MaLR 6 402 -7 441 277 144 35 chr11 91787249 91787451 -58996102 - MIR SINE MIR -8 254 31 282 272 22 11 chr11 91788114 91788206 -58995347 - MLT1I LTR MaLR 0 409 317 318 246 8 41 chr11 91792200 91792322 -58991231 + GA-rich Low_complexity Low_complexity 2 119 0 519 290 66 16 chr11 91792434 91792617 -58990936 + MIR SINE MIR 59 250 -12 249 108 0 0 chr11 91793209 91793246 -58990307 + (TG)n Simple_repeat Simple_repeat 2 38 0 297 308 133 7 chr11 91793252 91793395 -58990158 - MIR SINE MIR -73 189 29 2166 111 54 20 chr11 91793483 91793835 -58989718 + THE1B LTR MaLR 1 364 0 629 326 43 22 chr11 91794774 91795004 -58988549 + MIR SINE MIR 7 241 -21 239 242 16 0 chr11 91795018 91795080 -58988473 + (CAT)n Simple_repeat Simple_repeat 3 65 0 521 234 106 64 chr11 91795922 91796140 -58987413 + MIR SINE MIR 22 248 -14 215 274 0 0 chr11 91797319 91797381 -58986172 + (CA)n Simple_repeat Simple_repeat 2 63 0 509 279 198 57 chr11 91797381 91797913 -58985640 + L2 LINE L2 2694 3312 -1 193 304 200 9 chr11 91798069 91798184 -58985369 + L2 LINE L2 3176 3312 -1 24 53 0 0 chr11 91798996 91799034 -58984519 + AT_rich Low_complexity Low_complexity 1 38 0 205 335 76 51 chr11 91799064 91799222 -58984331 + L2 LINE L2 3152 3313 0 244 345 146 18 chr11 91799287 91799507 -58984046 + MIR SINE MIR 8 255 -7 272 277 22 34 chr11 91799581 91799682 -58983871 - MIR SINE MIR -66 142 43 196 301 96 96 chr11 91801063 91801272 -58982281 - MIR SINE MIR -46 216 8 494 304 141 11 chr11 91801442 91801633 -58981920 + MIR SINE MIR 13 228 -34 285 172 0 0 chr11 91802030 91802094 -58981459 + CT-rich Low_complexity Low_complexity 1 64 0 271 354 0 0 chr11 91802160 91802256 -58981297 + MIR SINE MIR 4 99 -163 491 256 132 41 chr11 91802283 91802549 -58981004 - L2 LINE L2 0 3313 3024 2003 130 0 7 chr11 91803608 91803909 -58979644 + AluSx SINE Alu 1 299 -13 206 261 128 23 chr11 91804232 91804373 -58979180 + MIR SINE MIR 41 193 -15 605 204 6 22 chr11 91804380 91804561 -58978992 + CT-rich Low_complexity Low_complexity 1 178 0 1380 62 0 0 chr11 91804562 91804741 -58978812 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1546 158 4 8 chr11 91804744 91805003 -58978550 - AluSx SINE Alu -33 279 22 294 256 56 22 chr11 91805587 91805677 -58977876 + MIR SINE MIR 159 251 -11 304 260 149 26 chr11 91806376 91806530 -58977023 - MIR SINE MIR 0 262 90 429 325 37 47 chr11 91807596 91807787 -58975766 - MIR SINE MIR 0 262 74 423 329 27 27 chr11 91807816 91807965 -58975588 + MIR SINE MIR 48 196 -66 1757 198 20 97 chr11 91808215 91808403 -58975150 + MLT1D LTR MaLR 1 202 -303 2661 13 0 0 chr11 91808403 91808701 -58974852 - AluYa5 SINE Alu -13 298 1 1757 198 20 97 chr11 91808701 91809057 -58974496 + MLT1D LTR MaLR 202 503 -2 362 307 82 132 chr11 91809456 91809736 -58973817 - L2 LINE L2 0 3272 3007 1904 198 11 3 chr11 91809855 91810223 -58973330 - L1P LINE L1 -2052 4094 3724 803 309 141 32 chr11 91810336 91810727 -58972826 + L2 LINE L2 2664 3130 -183 2223 87 23 0 chr11 91810727 91811026 -58972527 - AluSq SINE Alu -7 306 1 803 309 141 32 chr11 91811026 91811232 -58972321 + L2 LINE L2 3130 3312 -1 511 359 84 39 chr11 91811271 91812046 -58971507 + L1MEd LINE L1 298 1107 -5265 251 292 46 37 chr11 91812194 91812410 -58971143 + L1MEd LINE L1 1272 1489 -4895 279 0 0 0 chr11 91812421 91812452 -58971101 + (TTA)n Simple_repeat Simple_repeat 3 33 0 256 279 125 62 chr11 91812562 91812770 -58970783 - MIR SINE MIR -10 252 32 377 316 95 12 chr11 91812828 91812996 -58970557 + MIR SINE MIR 75 256 -6 284 0 28 0 chr11 91813136 91813172 -58970381 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 625 122 43 0 chr11 91813174 91813289 -58970264 - LTR9B LTR ERV1 -80 564 445 21 36 0 0 chr11 91813417 91813445 -58970108 + AT_rich Low_complexity Low_complexity 1 28 0 255 328 53 30 chr11 91814074 91814205 -58969348 - MER5A DNA MER1_type 0 189 56 385 241 146 43 chr11 91814240 91814411 -58969142 - MIR SINE MIR -75 187 10 701 226 36 3 chr11 91814873 91815083 -58968470 + L1MEd LINE L1 1400 1677 -4705 2903 85 10 0 chr11 91815085 91815487 -58968066 + L1PA8 LINE L1 5764 6169 -3 5940 143 37 18 chr11 91815496 91817291 -58966262 + L1MA2 LINE L1 4475 6304 0 6670 219 29 14 chr11 91817297 91817603 -58965950 + L1MEd LINE L1 2136 2436 -3946 360 0 0 0 chr11 91817603 91817643 -58965910 + (CA)n Simple_repeat Simple_repeat 2 41 0 6670 219 29 14 chr11 91817643 91819212 -58964341 + L1MEd LINE L1 2436 4038 -2344 238 229 0 0 chr11 91819242 91819290 -58964263 + L1MA8 LINE L1 5018 5065 -1081 * 239 54 0 0 chr11 91819289 91819326 -58964227 + L1PA2 LINE L1 6114 6150 -5 302 45 23 0 chr11 91819332 91819376 -58964177 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 4623 148 18 14 chr11 91819396 91820400 -58963153 + L1MA8 LINE L1 5057 6064 -227 925 305 126 29 chr11 91822359 91822883 -58960670 - L3 LINE CR1 -72 1505 931 430 323 21 31 chr11 91823676 91823868 -58959685 + MIR3 SINE MIR 16 205 -3 250 273 18 0 chr11 91823990 91824045 -58959508 + MER91A DNA MER1_type 139 194 -2 2195 106 0 28 chr11 91824205 91824526 -58959027 + AluSx SINE Alu 1 312 0 189 311 66 0 chr11 91824536 91824597 -58958956 + MIR3 SINE MIR 123 187 -21 416 314 142 18 chr11 91825528 91825754 -58957799 - MIR SINE MIR -3 259 6 1424 122 41 0 chr11 91826331 91826552 -58957001 + MER30 DNA MER1_type 1 230 0 24 0 0 0 chr11 91827177 91827201 -58956352 + AT_rich Low_complexity Low_complexity 1 24 0 253 332 127 62 chr11 91827374 91828105 -58955448 + L2 LINE L2 2064 2842 -472 21 0 0 0 chr11 91828421 91828442 -58955111 + AT_rich Low_complexity Low_complexity 1 21 0 365 236 9 36 chr11 91828447 91828557 -58954996 - MER103 DNA DNA 0 166 60 1660 144 25 68 chr11 91828799 91829102 -58954451 + MER44D DNA MER2_type 2 559 -1932 2672 33 0 0 chr11 91829102 91829404 -58954149 - AluY SINE Alu -9 302 1 1660 144 25 68 chr11 91829404 91829453 -58954100 + MER44D DNA MER2_type 559 609 0 512 247 51 13 chr11 91830005 91830163 -58953390 - MER104 DNA Tc2 -12 168 5 414 57 0 0 chr11 91830209 91830262 -58953291 + (TC)n Simple_repeat Simple_repeat 1 53 0 226 156 172 62 chr11 91830410 91830474 -58953079 + L2 LINE L2 3234 3304 -9 609 243 81 22 chr11 91831236 91831421 -58952132 - MER63A DNA MER1_type 0 210 15 6261 180 28 5 chr11 91831510 91833275 -58950278 + L1PA15 LINE L1 4030 5817 -348 1076 110 0 4 chr11 91833275 91833466 -58950087 + AluSg SINE Alu 36 306 -6 2262 131 3 0 chr11 91833475 91833810 -58949743 + L1PA15 LINE L1 5817 6152 -13 189 0 0 0 chr11 91833814 91833835 -58949718 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 216 0 0 0 chr11 91834444 91834468 -58949085 + (T)n Simple_repeat Simple_repeat 1 24 0 1469 204 4 4 chr11 91834842 91835116 -58948437 - AluJo SINE Alu -32 280 7 664 352 47 36 chr11 91835322 91835706 -58947847 - L3 LINE CR1 -8 1569 1182 23 68 0 0 chr11 91835755 91835799 -58947754 + AT_rich Low_complexity Low_complexity 1 44 0 279 0 0 0 chr11 91836233 91836264 -58947289 + (A)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr11 91836358 91836379 -58947174 + AT_rich Low_complexity Low_complexity 1 21 0 239 322 9 61 chr11 91838544 91838659 -58944894 - MIR SINE MIR -119 143 35 350 324 58 60 chr11 91838967 91839430 -58944123 + L2 LINE L2 2371 2832 -482 2120 98 3 7 chr11 91839437 91839732 -58943821 - AluSx SINE Alu -18 294 1 23 0 0 0 chr11 91839765 91839788 -58943765 + AT_rich Low_complexity Low_complexity 1 23 0 711 80 40 40 chr11 91839814 91839939 -58943614 - L1MB2 LINE L1 0 6171 6047 349 356 85 23 chr11 91839955 91840132 -58943421 + L2 LINE L2 3077 3264 -8 465 302 95 30 chr11 91840781 91841013 -58942540 + LTR16A1 LTR ERVL 210 456 -1 243 291 162 27 chr11 91841441 91841589 -58941964 - MIR SINE MIR -64 198 31 980 50 0 0 chr11 91841908 91842028 -58941525 - L1PA5 LINE L1 -1513 4633 4514 7221 42 2 1 chr11 91842030 91843541 -58940012 + L1PA5 LINE L1 4638 6167 0 424 346 35 79 chr11 91843719 91844034 -58939519 + L2 LINE L2 2971 3271 -1 297 75 0 0 chr11 91844452 91844492 -58939061 + (GA)n Simple_repeat Simple_repeat 1 40 0 203 343 37 30 chr11 91844763 91844897 -58938656 + L2 LINE L2 3179 3313 0 296 281 93 93 chr11 91845819 91845958 -58937595 + L2 LINE L2 3134 3272 0 292 299 125 42 chr11 91846727 91846871 -58936682 - MIR SINE MIR -76 186 31 334 362 121 5 chr11 91846872 91847096 -58936457 + MIR SINE MIR 2 251 -11 219 351 0 0 chr11 91847693 91847804 -58935749 + (CCA)n Simple_repeat Simple_repeat 1 111 0 2048 153 0 0 chr11 91848072 91848379 -58935174 - AluSx SINE Alu -5 307 1 2399 134 38 21 chr11 91848418 91848837 -58934716 + MSTA LTR MaLR 3 428 0 608 306 73 20 chr11 91849272 91849520 -58934033 + MIR SINE MIR 2 262 0 386 290 0 40 chr11 91849766 91849866 -58933687 - L2 LINE L2 -8 3264 3169 337 359 112 22 chr11 91849858 91850170 -58933383 + L2 LINE L2 2928 3267 -5 * 3756 32 7 4 chr11 91850606 91851067 -58932486 - L1PA4 LINE L1 -2 6153 5692 230 170 38 19 chr11 91851189 91851242 -58932311 + HAL1b LINE L1 1205 1258 -90 440 338 57 5 chr11 91851844 91852054 -58931499 + MIR SINE MIR 31 251 -11 2029 145 0 7 chr11 91852067 91852377 -58931176 - AluSx SINE Alu -3 309 2 384 22 0 0 chr11 91852438 91852483 -58931070 + (CA)n Simple_repeat Simple_repeat 2 46 0 375 274 40 40 chr11 91853068 91853192 -58930361 - L2 LINE L2 0 3313 3190 506 282 45 13 chr11 91853828 91853984 -58929569 - MIR SINE MIR -51 211 51 197 257 193 46 chr11 91854352 91854461 -58929092 + L2 LINE L2 3148 3272 0 298 270 132 13 chr11 91854911 91855063 -58928490 + L2 LINE L2 3140 3309 -4 277 308 39 51 chr11 91855065 91855221 -58928332 + L2 LINE L2 2621 2774 -540 289 190 76 0 chr11 91855709 91855788 -58927765 - HsTC2 DNA Tc2 -1811 87 3 602 336 88 43 chr11 91856651 91856787 -58926766 - L2 LINE L2 -26 3287 3159 2153 102 3 0 chr11 91856787 91857071 -58926482 + AluSp SINE Alu 1 285 -28 602 336 88 43 chr11 91857071 91857504 -58926049 - L2 LINE L2 -154 3159 2685 3099 176 17 37 chr11 91857504 91858151 -58925402 + L1MB2 LINE L1 5531 6164 -7 602 336 88 43 chr11 91858151 91858274 -58925279 - L2 LINE L2 -628 2685 2569 1200 156 57 5 chr11 91858759 91858971 -58924582 + MER30 DNA MER1_type 6 228 -2 682 96 0 0 chr11 91859090 91859184 -58924369 - L1PA12 LINE L1 -213 5955 5862 1522 189 63 61 chr11 91859408 91859804 -58923749 + MLT2C1 LTR ERVL 1 397 0 496 259 59 115 chr11 91859821 91860316 -58923237 - L1ME3A LINE L1 -219 5951 5485 348 330 0 0 chr11 91860349 91860449 -58923104 - L2 LINE L2 -780 2534 2435 191 219 0 0 chr11 91862591 91862623 -58920930 - L2 LINE L2 -21 3292 3261 416 366 15 8 chr11 91863220 91863354 -58920199 - L2 LINE L2 -4 3268 3134 419 333 43 98 chr11 91863650 91863977 -58919576 + L2 LINE L2 2956 3264 -8 27 49 0 0 chr11 91864635 91864676 -58918877 + AT_rich Low_complexity Low_complexity 1 41 0 1696 172 3 10 chr11 91865060 91865350 -58918203 - AluJb SINE Alu 0 312 25 298 234 0 52 chr11 91865432 91865509 -58918044 + L2 LINE L2 3240 3312 -1 186 325 0 48 chr11 91866117 91866200 -58917353 + MIR3 SINE MIR 81 159 -49 6927 50 24 0 chr11 91867359 91868271 -58915282 - L1PA5 LINE L1 0 6154 5235 11167 71 3 1 chr11 91868372 91869853 -58913700 - L1PA5 LINE L1 -1063 5083 3600 25 0 0 0 chr11 91869973 91869998 -58913555 + AT_rich Low_complexity Low_complexity 1 25 0 234 0 0 0 chr11 91870011 91870037 -58913516 + (A)n Simple_repeat Simple_repeat 1 26 0 499 309 77 67 chr11 91870037 91870341 -58913212 - L1ME4a LINE L1 -203 5918 5618 207 0 0 0 chr11 91870341 91870364 -58913189 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2318 83 0 0 chr11 91870367 91870655 -58912898 - AluY SINE Alu -23 288 1 499 309 77 67 chr11 91870655 91870867 -58912686 - L1ME4a LINE L1 -504 5617 5393 935 330 92 26 chr11 91870890 91871719 -58911834 - L1ME4a LINE L1 -798 5348 4466 23 0 0 0 chr11 91872201 91872224 -58911329 + AT_rich Low_complexity Low_complexity 1 23 0 223 311 68 0 chr11 91873303 91873406 -58910147 + MIR SINE MIR 105 214 -48 207 329 141 0 chr11 91874584 91874669 -58908884 - MIR SINE MIR -115 147 51 417 308 127 32 chr11 91874902 91875373 -58908180 - L1ME4a LINE L1 -2963 3183 2668 873 46 0 0 chr11 91876469 91876577 -58906976 - L1PA5 LINE L1 -1187 4959 4852 6950 56 8 0 chr11 91876583 91877738 -58905815 + L1PA5 LINE L1 4987 6151 -3 25 0 0 0 chr11 91877738 91877763 -58905790 + AT_rich Low_complexity Low_complexity 1 25 0 270 349 44 71 chr11 91879711 91880060 -58903493 - L2 LINE L2 -1354 1960 1620 1078 217 32 0 chr11 91880060 91880277 -58903276 - MER58A DNA MER1_type 0 224 1 270 349 44 71 chr11 91880277 91880291 -58903262 - L2 LINE L2 -1694 1620 1607 284 401 67 27 chr11 91880580 91880909 -58902644 - L2 LINE L2 -2110 1204 863 23 0 0 0 chr11 91881780 91881803 -58901750 + AT_rich Low_complexity Low_complexity 1 23 0 582 311 30 19 chr11 91882862 91883080 -58900473 - MIR SINE MIR -6 256 34 535 255 62 98 chr11 91883804 91884135 -58899418 - MLT1G1 LTR MaLR -300 290 6 373 283 139 44 chr11 91884237 91884417 -58899136 - MIR SINE MIR -53 209 13 2191 102 3 7 chr11 91884672 91884965 -58898588 - AluSc SINE Alu -17 292 1 808 80 0 0 chr11 91885070 91885170 -58898383 - AluS SINE Alu -213 100 1 237 377 97 19 chr11 91885170 91885324 -58898229 + L2 LINE L2 3107 3272 0 260 319 0 14 chr11 91885539 91885611 -58897942 - MIR3 SINE MIR -28 180 110 784 316 141 40 chr11 91888049 91888537 -58895016 + L2 LINE L2 2782 3313 0 385 174 33 0 chr11 91888621 91888713 -58894840 - L1MB3 LINE L1 -2 6181 6087 287 329 87 27 chr11 91888749 91888898 -58894655 - MIR3 SINE MIR -31 177 30 1045 277 3 26 chr11 91888972 91889315 -58894238 + MER46C DNA MER2_type 1 335 -3 375 121 0 0 chr11 91889478 91889536 -58894017 + (T)n Simple_repeat Simple_repeat 1 58 0 2483 60 3 19 chr11 91889669 91890022 -58893531 - AluY SINE Alu 0 348 1 361 337 86 11 chr11 91890105 91890292 -58893261 - MIR SINE MIR -47 215 15 15970 103 8 1 chr11 91890513 91893674 -58889879 + L1PA7 LINE L1 2994 6149 -5 23 33 0 0 chr11 91893829 91893859 -58889694 + AT_rich Low_complexity Low_complexity 1 30 0 1822 162 77 160 chr11 91894261 91894731 -58888822 - Tigger2 DNA MER2_type -3 2715 1 181 338 15 0 chr11 91894897 91894965 -58888588 - MER5C DNA MER1_type -254 70 2 197 289 132 44 chr11 91895301 91895415 -58888138 + MER5B DNA MER1_type 1 124 -54 1647 164 81 7 chr11 91895415 91895448 -58888105 - L1MC1 LINE L1 0 6333 6304 355 145 65 0 chr11 91895448 91895510 -58888043 - L1MC1 LINE L1 -18 6315 6250 1647 164 81 7 chr11 91895510 91895786 -58887767 - L1MC1 LINE L1 -29 6304 6001 235 218 18 18 chr11 91895790 91895845 -58887708 - MER5B DNA MER1_type -123 55 1 1229 196 0 18 chr11 91896074 91896298 -58887255 + AluJb SINE Alu 72 291 -21 351 367 11 26 chr11 91896778 91897033 -58886520 - MIR SINE MIR -7 255 4 335 289 122 54 chr11 91898351 91898645 -58884908 + L1MEd LINE L1 22 335 -5784 1703 148 91 23 chr11 91898877 91899228 -58884325 - THE1C LTR MaLR 0 375 1 34 55 0 0 chr11 91899344 91899399 -58884154 + AT_rich Low_complexity Low_complexity 1 55 0 303 233 117 71 chr11 91900955 91901236 -58882317 + L1MEd LINE L1 1003 1250 -4869 373 263 56 73 chr11 91901928 91902107 -58881446 - MIR SINE MIR -59 203 28 221 345 113 24 chr11 91902147 91902315 -58881238 - MIR SINE MIR -28 234 52 267 126 72 0 chr11 91902803 91902872 -58880681 - L1MA7 LINE L1 -1 6290 6225 21 0 0 0 chr11 91903329 91903350 -58880203 + AT_rich Low_complexity Low_complexity 1 21 0 708 89 0 0 chr11 91903350 91903451 -58880102 - L1PA8 LINE L1 -1 6171 6071 1018 214 75 76 chr11 91903492 91904055 -58879498 - LTR22B LTR ERVK -4 488 1 3741 74 28 0 chr11 91904055 91904554 -58878999 - L1PA8 LINE L1 -96 6076 5564 1812 68 21 0 chr11 91904554 91904859 -58878694 + L1P3 LINE L1 5198 5507 -665 286 338 67 94 chr11 91904992 91905558 -58877995 - L2 LINE L2 -4 3268 2716 3726 184 39 88 chr11 91905582 91905862 -58877691 - L1MD1 LINE L1 -17 6225 5933 1760 182 3 0 chr11 91905862 91906169 -58877384 - AluJo SINE Alu 0 312 5 3726 184 39 88 chr11 91906169 91906785 -58876768 - L1MD1 LINE L1 -309 5933 5398 1469 224 36 28 chr11 91906785 91907147 -58876406 - MLT1A1 LTR MaLR 0 365 1 3726 184 39 88 chr11 91907147 91907462 -58876091 - L1MD1 LINE L1 -844 5398 5069 2269 199 62 50 chr11 91907463 91907925 -58875628 - L1MD1 LINE L1 -1210 4936 4460 2167 120 3 0 chr11 91907925 91908217 -58875336 + AluSq SINE Alu 1 293 -20 2269 199 62 50 chr11 91908217 91908526 -58875027 - L1MD1 LINE L1 -1686 4460 4156 * 8999 181 45 7 chr11 91908522 91911375 -58872178 - L1PB1 LINE L1 -2 6149 3211 225 0 0 0 chr11 91911381 91911406 -58872147 + (T)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr11 91911525 91911545 -58872008 + (T)n Simple_repeat Simple_repeat 1 20 0 859 164 0 8 chr11 91911545 91911679 -58871874 - AluSq/x SINE Alu -179 133 1 198 0 0 0 chr11 91912963 91912985 -58870568 + (A)n Simple_repeat Simple_repeat 1 22 0 189 246 31 62 chr11 91913215 91913280 -58870273 + MIR SINE MIR 64 126 -82 2320 78 10 3 chr11 91913655 91913951 -58869602 - AluY SINE Alu -13 298 1 1542 164 109 32 chr11 91914887 91915235 -58868318 - THE1C LTR MaLR 0 375 1 382 292 92 8 chr11 91915587 91915707 -58867846 + MIR SINE MIR 46 175 -87 * 710 261 140 45 chr11 91915706 91916020 -58867533 + L2 LINE L2 2950 3293 -20 23 0 0 0 chr11 91916071 91916094 -58867459 + AT_rich Low_complexity Low_complexity 1 23 0 182 91 30 0 chr11 91916213 91916246 -58867307 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 296 315 65 0 chr11 91916500 91916592 -58866961 + L2 LINE L2 3195 3292 -21 440 256 101 42 chr11 91916832 91917000 -58866553 + MIR SINE MIR 14 191 -71 288 0 0 0 chr11 91917707 91917739 -58865814 + (T)n Simple_repeat Simple_repeat 1 32 0 7365 178 118 21 chr11 91917915 91919515 -58864038 - MER52A LTR ERV1 0 1755 1 964 156 12 0 chr11 91920153 91920313 -58863240 + MER57A LTR ERV1 1 162 -241 769 169 59 0 chr11 91920338 91920407 -58863146 - AluSx SINE Alu -108 204 140 186 43 0 0 chr11 91920407 91920430 -58863123 + (TG)n Simple_repeat Simple_repeat 2 24 0 769 169 59 0 chr11 91920430 91920496 -58863057 - AluSx SINE Alu -172 140 61 1122 165 48 0 chr11 91920496 91920702 -58862851 + MER57A LTR ERV1 184 399 -4 382 274 73 51 chr11 91921240 91921474 -58862079 - L1M4 LINE L1 -2944 3202 2964 419 103 0 0 chr11 91921499 91921557 -58861996 - L1PA16 LINE L1 -16 6150 6093 809 229 11 0 chr11 91922322 91922497 -58861056 - AluSc SINE Alu -14 295 119 2476 30 40 0 chr11 91922665 91922961 -58860592 - AluY SINE Alu -3 308 1 5840 159 37 10 chr11 91922978 91923099 -58860454 + L1M2c LINE L1 1254 1370 -5419 216 0 0 0 chr11 91923099 91923123 -58860430 + (CCA)n Simple_repeat Simple_repeat 3 26 0 5840 159 37 10 chr11 91923123 91924054 -58859499 + L1M2c LINE L1 1370 2334 -4455 2532 161 4 7 chr11 91924083 91924536 -58859017 - L1MC1 LINE L1 0 6333 5882 261 125 0 0 chr11 91924537 91924577 -58858976 - L1MC1 LINE L1 -426 5738 5699 649 199 6 43 chr11 91924665 91924826 -58858727 - L1MD2 LINE L1 -10 6349 6195 247 350 98 0 chr11 91925054 91925177 -58858376 - L2 LINE L2 0 3313 3179 1972 106 71 3 chr11 91925349 91925631 -58857922 - AluSg SINE Alu -9 301 1 180 0 0 0 chr11 91925770 91925790 -58857763 + (CAA)n Simple_repeat Simple_repeat 2 21 0 195 42 0 0 chr11 91926506 91926530 -58857023 + (A)n Simple_repeat Simple_repeat 1 24 0 2545 155 34 0 chr11 91926783 91927195 -58856358 + MSTA LTR MaLR 1 426 -2 293 320 156 0 chr11 91927607 91927735 -58855818 - L2 LINE L2 -10 3262 3115 246 62 0 0 chr11 91927852 91927884 -58855669 + (GAAAA)n Simple_repeat Simple_repeat 1 32 0 316 227 45 0 chr11 91928119 91928185 -58855368 + MIR SINE MIR 84 152 -110 365 249 124 92 chr11 91928554 91928803 -58854750 - MLT1L LTR MaLR -344 271 15 349 309 115 23 chr11 91929039 91929256 -58854297 + MIR SINE MIR 20 256 -6 21 36 0 0 chr11 91929318 91929346 -58854207 + AT_rich Low_complexity Low_complexity 1 28 0 199 222 0 0 chr11 91930102 91930147 -58853406 - L2 LINE L2 0 3272 3228 640 221 8 0 chr11 91930494 91930621 -58852932 + FLAM_C SINE Alu 1 128 -5 189 74 0 0 chr11 91930626 91930653 -58852900 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 2020 165 18 3 chr11 91930971 91931311 -58852242 + MER7A DNA MER2_type 4 346 0 22 0 0 0 chr11 91931326 91931348 -58852205 + AT_rich Low_complexity Low_complexity 1 22 0 462 240 10 19 chr11 91931495 91931599 -58851954 + L2 LINE L2 3198 3300 -13 1024 117 0 0 chr11 91931758 91931912 -58851641 - L1PA11 LINE L1 0 6174 6021 22 0 0 0 chr11 91931926 91931948 -58851605 + AT_rich Low_complexity Low_complexity 1 22 0 35 24 0 0 chr11 91932115 91932157 -58851396 + AT_rich Low_complexity Low_complexity 1 42 0 446 240 114 34 chr11 91932829 91933004 -58850549 - MIR SINE MIR -7 255 67 207 346 77 29 chr11 91933718 91933822 -58849731 + MIR SINE MIR 21 129 -133 * 653 255 43 71 chr11 91933821 91934076 -58849477 - L2 LINE L2 -1 3312 3065 3765 9 0 0 chr11 91934174 91934601 -58848952 - L1PA2 LINE L1 0 6155 5729 450 378 34 14 chr11 91934601 91934810 -58848743 - L2 LINE L2 -250 3063 2851 1558 316 102 29 chr11 91934857 91935750 -58847803 - L2 LINE L2 -611 2703 1746 21 36 0 0 chr11 91936116 91936144 -58847409 + AT_rich Low_complexity Low_complexity 1 28 0 1859 206 10 3 chr11 91936187 91936571 -58846982 + L1MC1 LINE L1 5937 6323 -10 2423 73 0 0 chr11 91937028 91937329 -58846224 - AluY SINE Alu -10 301 1 297 194 0 81 chr11 91937933 91937995 -58845558 + AluS SINE Alu 1 57 -251 375 284 133 13 chr11 91938054 91938223 -58845330 + MIR SINE MIR 15 206 -56 1219 79 0 34 chr11 91938306 91938483 -58845070 - MER30 DNA MER1_type -59 171 1 1138 197 72 33 chr11 91938769 91939074 -58844479 + MER5C DNA MER1_type 8 324 0 243 103 0 0 chr11 91939209 91939248 -58844305 + (ATG)n Simple_repeat Simple_repeat 2 40 0 223 179 282 13 chr11 91939254 91939332 -58844221 - MIR SINE MIR -55 207 109 495 340 47 32 chr11 91939571 91939850 -58843703 - L3 LINE CR1 -2 1575 1293 324 258 138 60 chr11 91939910 91940077 -58843476 + MIR SINE MIR 31 210 -52 2043 156 0 0 chr11 91940477 91940784 -58842769 - AluSx SINE Alu -5 307 1 238 367 0 0 chr11 91940839 91940918 -58842635 - L2 LINE L2 -61 3211 3133 1633 195 40 25 chr11 91942332 91942748 -58840805 + LTR1B LTR ERV1 1 614 -212 2087 167 41 31 chr11 91942985 91943514 -58840039 + MLT2A2 LTR ERVL 17 554 0 23 0 0 0 chr11 91943677 91943700 -58839853 + AT_rich Low_complexity Low_complexity 1 23 0 285 339 71 9 chr11 91944301 91944413 -58839140 - L2 LINE L2 0 3272 3154 188 254 73 0 chr11 91944713 91944768 -58838785 + L2 LINE L2 3169 3227 -45 593 238 7 27 chr11 91946037 91946184 -58837369 - MIR SINE MIR 0 262 119 200 333 0 0 chr11 91948131 91948191 -58835362 + L2 LINE L2 3209 3268 -4 502 317 42 46 chr11 91948571 91948811 -58834742 + MIR SINE MIR 21 259 -3 5888 148 23 5 chr11 91950535 91951569 -58831984 + L1PA15-16 LINE L1 1628 2680 -4169 1681 223 68 6 chr11 91951571 91951911 -58831642 + MSTA LTR MaLR 2 366 -62 2023 148 12 9 chr11 91951911 91952256 -58831297 - L1PA13 LINE L1 -4 6159 5814 1681 223 68 6 chr11 91952256 91952269 -58831284 + MSTA LTR MaLR 366 377 -51 193 309 119 0 chr11 91953892 91953976 -58829577 + L2 LINE L2 3137 3230 -42 225 386 14 37 chr11 91954147 91954362 -58829191 - L2 LINE L2 -806 2508 2299 256 273 13 0 chr11 91955102 91955179 -58828374 - MIR SINE MIR -6 256 179 292 360 65 7 chr11 91955372 91955525 -58828028 + MER5B DNA MER1_type 17 178 0 556 138 11 0 chr11 91955906 91956025 -58827528 - AluSx SINE Alu 0 312 193 1048 116 0 0 chr11 91956026 91956172 -58827381 - AluSx SINE Alu -166 146 1 381 339 31 79 chr11 91956537 91956829 -58826724 - L2 LINE L2 0 3272 2995 2585 181 32 18 chr11 91957210 91957706 -58825847 + MLT1D LTR MaLR 3 505 0 946 367 71 20 chr11 91958440 91958936 -58824617 - L2 LINE L2 -217 3055 2486 2007 147 7 0 chr11 91958936 91959242 -58824311 + AluSq SINE Alu 1 308 -5 946 367 71 20 chr11 91959242 91959579 -58823974 - L2 LINE L2 -786 2486 2167 2212 113 0 3 chr11 91959942 91960235 -58823318 - AluSq SINE Alu -21 292 1 229 324 0 0 chr11 91960299 91960367 -58823186 - MIR SINE MIR -119 143 76 8881 101 3 13 chr11 91960428 91961780 -58821773 - L1P LINE L1 -2541 3605 2267 2006 92 0 42 chr11 91961894 91962200 -58821353 - AluY SINE Alu -18 293 1 3707 103 30 0 chr11 91962200 91962807 -58820746 - L1PA13 LINE L1 -334 5829 5207 484 59 0 15 chr11 91962807 91962875 -58820678 + MSTB1 LTR MaLR 362 428 -4 1287 174 8 0 chr11 91962876 91963123 -58820430 + L1PA16 LINE L1 2674 2922 -3927 430 198 0 8 chr11 91963122 91963243 -58820310 + L1 LINE L1 4295 4414 -1732 * 11464 198 32 23 chr11 91963240 91967149 -58816404 + L1PA16 LINE L1 2921 6860 -9 1414 251 28 39 chr11 91967373 91967403 -58816150 - L1ME1 LINE L1 -38 6128 6099 1450 199 17 20 chr11 91967403 91967704 -58815849 - AluJo SINE Alu -12 300 1 1414 251 28 39 chr11 91967704 91968145 -58815408 - L1ME1 LINE L1 -67 6099 5357 4528 201 33 16 chr11 91968145 91968822 -58814731 - L1PB4 LINE L1 -1 6155 5491 207 0 0 0 chr11 91968822 91968845 -58814708 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4528 201 33 16 chr11 91968845 91969868 -58813685 - L1PB4 LINE L1 -665 5491 4434 1626 213 76 85 chr11 91969868 91970384 -58813169 + MLT2B3 LTR ERVL 1 511 -43 180 0 0 0 chr11 91970401 91970421 -58813132 + (CA)n Simple_repeat Simple_repeat 1 20 0 276 132 0 0 chr11 91970435 91970482 -58813071 + MLT2C2 LTR ERVL 399 456 -8 1592 191 15 0 chr11 91970486 91970816 -58812737 - L1PB4 LINE L1 -1707 4439 4105 3467 200 29 25 chr11 91970821 91971677 -58811876 + L1PB4 LINE L1 3222 4081 -2065 922 215 11 29 chr11 91971691 91971934 -58811619 - L1M1 LINE L1 -539 5627 5384 219 36 0 0 chr11 91972268 91972296 -58811257 + (TG)n Simple_repeat Simple_repeat 2 29 0 1075 129 18 12 chr11 91972445 91972656 -58810897 + AluSq SINE Alu 121 332 0 2145 227 92 94 chr11 91972737 91973028 -58810525 - L1MC5 LINE L1 -47 7914 7624 1582 163 37 14 chr11 91973028 91973378 -58810175 + L1MA8 LINE L1 5934 6291 0 2145 227 92 94 chr11 91973378 91974379 -58809174 - L1MC5 LINE L1 -337 7624 6625 262 163 0 0 chr11 91975659 91975708 -58807845 + L2 LINE L2 2924 2972 -300 2065 141 3 10 chr11 91976105 91976417 -58807136 + AluSx SINE Alu 3 312 0 279 0 0 0 chr11 91976594 91976625 -58806928 + (TG)n Simple_repeat Simple_repeat 2 32 0 249 313 12 24 chr11 91976959 91977042 -58806511 - L2 LINE L2 -1 3271 3190 210 25 50 25 chr11 91977044 91977084 -58806469 + (TAA)n Simple_repeat Simple_repeat 1 41 0 252 0 0 0 chr11 91977975 91978003 -58805550 + (CA)n Simple_repeat Simple_repeat 1 28 0 279 306 60 54 chr11 91978100 91978228 -58805325 + MIR SINE MIR 16 142 -66 465 279 0 23 chr11 91978745 91978900 -58804653 + MIR3 SINE MIR 51 203 -5 191 374 95 32 chr11 91978902 91979092 -58804461 + L2 LINE L2 2889 3090 -182 1064 98 0 0 chr11 91979552 91979685 -58803868 + AluSq/x SINE Alu 1 133 -179 198 0 0 0 chr11 91979685 91979707 -58803846 + (A)n Simple_repeat Simple_repeat 1 22 0 240 111 0 0 chr11 91980007 91980043 -58803510 + (A)n Simple_repeat Simple_repeat 1 36 0 214 315 0 0 chr11 91980235 91980289 -58803264 + L2 LINE L2 3218 3271 -1 269 299 23 63 chr11 91980550 91980724 -58802829 + L2 LINE L2 3146 3312 -1 18340 167 46 11 chr11 91981321 91982848 -58800705 - L1MA2 LINE L1 0 7723 6252 1506 173 96 34 chr11 91982848 91983201 -58800352 - THE1C LTR MaLR 0 375 1 18340 167 46 11 chr11 91983201 91986076 -58797477 - L1MA2 LINE L1 -1471 6252 3481 1352 123 40 20 chr11 91986076 91986217 -58797336 + L1MA2 LINE L1 6047 6197 -107 7426 171 63 104 chr11 91986217 91988048 -58795505 + MER52A LTR ERV1 1 1755 0 1352 123 40 20 chr11 91988048 91988159 -58795394 + L1MA2 LINE L1 6197 6304 0 18340 167 46 11 chr11 91988159 91988724 -58794829 - L1MA2 LINE L1 -4242 3481 2938 2256 99 3 3 chr11 91988724 91989051 -58794502 - AluSp SINE Alu 0 313 1 18340 167 46 11 chr11 91989051 91991510 -58792043 - L1MA2 LINE L1 -4785 2938 20 255 324 93 19 chr11 91992421 91992529 -58791024 - MIR SINE MIR -61 147 32 1960 72 43 7 chr11 91993194 91993470 -58790083 + AluY SINE Alu 1 286 -25 293 284 52 86 chr11 91994024 91994140 -58789413 + MIR SINE MIR 20 131 -131 288 0 0 0 chr11 91994270 91994302 -58789251 + (CAG)n Simple_repeat Simple_repeat 1 32 0 1941 132 3 7 chr11 91994699 91995003 -58788550 - AluSc SINE Alu -6 303 1 209 362 55 16 chr11 91995006 91995133 -58788420 + MIR SINE MIR 124 255 -7 278 296 23 45 chr11 91995759 91995847 -58787706 + L2 LINE L2 3203 3288 -25 8224 179 112 49 chr11 91996289 91997319 -58786234 + L1MD1 LINE L1 19 983 -5653 2198 147 22 71 chr11 91997319 91997769 -58785784 + MSTA LTR MaLR 1 428 0 8224 179 112 49 chr11 91997769 91999068 -58784485 + L1MD1 LINE L1 983 2199 -4437 2382 109 0 0 chr11 91999068 91999381 -58784172 + AluSq SINE Alu 1 313 0 8224 179 112 49 chr11 91999381 92003058 -58780495 + L1MD1 LINE L1 2199 6632 -4 381 326 30 0 chr11 92003617 92003749 -58779804 - L2 LINE L2 0 3272 3137 273 57 0 0 chr11 92005076 92005111 -58778442 + (CA)n Simple_repeat Simple_repeat 2 36 0 320 336 60 47 chr11 92005181 92005416 -58778137 - MIR SINE MIR -17 245 8 180 286 102 82 chr11 92006302 92006596 -58776957 + L2 LINE L2 2678 2977 -337 196 352 14 0 chr11 92007363 92007434 -58776119 + L2 LINE L2 3238 3309 -4 569 347 51 0 chr11 92008437 92008653 -58774900 - MIR SINE MIR 0 262 36 302 272 12 12 chr11 92008794 92008875 -58774678 + MIR SINE MIR 67 147 -115 223 173 96 19 chr11 92010163 92010215 -58773338 + L2 LINE L2 3205 3260 -12 27 0 0 0 chr11 92010353 92010380 -58773173 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr11 92010394 92010433 -58773120 + AT_rich Low_complexity Low_complexity 1 39 0 539 206 138 38 chr11 92010451 92010611 -58772942 + MER69A DNA AcHobo 1 176 -1 227 356 52 15 chr11 92010651 92010786 -58772767 - MIR3 SINE MIR -66 142 3 291 71 0 0 chr11 92010970 92011012 -58772541 + (CA)n Simple_repeat Simple_repeat 1 42 0 423 383 53 18 chr11 92012162 92012619 -58770934 + L2 LINE L2 2543 3011 -261 266 88 0 0 chr11 92012835 92012869 -58770684 + U2 snRNA snRNA 1 34 -154 1151 251 67 0 chr11 92013200 92013515 -58770038 - MER58B DNA MER1_type -1 340 5 195 125 0 0 chr11 92013532 92013572 -58769981 + (A)n Simple_repeat Simple_repeat 1 40 0 320 261 65 29 chr11 92014878 92015016 -58768537 + MIR SINE MIR 120 262 0 1071 294 82 22 chr11 92015245 92015486 -58768067 + L2 LINE L2 2834 3059 -254 423 0 0 0 chr11 92015486 92015533 -58768020 + (CA)n Simple_repeat Simple_repeat 1 47 0 1071 294 82 22 chr11 92015533 92015743 -58767810 + L2 LINE L2 3059 3312 -1 260 288 0 0 chr11 92015825 92015891 -58767662 - L2 LINE L2 -1 3312 3247 227 333 67 0 chr11 92016508 92016598 -58766955 - MIR SINE MIR -78 184 89 1732 125 0 0 chr11 92017961 92018240 -58765313 - L1MA2 LINE L1 0 6304 6026 198 360 104 8 chr11 92018617 92018742 -58764811 + L2 LINE L2 2567 2703 -611 242 274 0 123 chr11 92019014 92019120 -58764433 - MIR SINE MIR -63 145 52 189 0 0 0 chr11 92019581 92019602 -58763951 + (A)n Simple_repeat Simple_repeat 1 21 0 1112 99 28 33 chr11 92019889 92020070 -58763483 + L1MA1 LINE L1 5802 5981 -321 664 308 69 19 chr11 92021265 92021525 -58762028 + MLT1I LTR MaLR 1 273 -136 437 291 124 30 chr11 92021660 92021894 -58761659 + MIR SINE MIR 2 257 -5 200 244 0 0 chr11 92022284 92022325 -58761228 - MIR SINE MIR -58 150 110 276 263 75 0 chr11 92024134 92024214 -58759339 + MER117 DNA MER1_type 111 196 -1 280 261 138 29 chr11 92027067 92027205 -58756348 + MER103 DNA DNA 11 163 -3 406 336 22 45 chr11 92027435 92027658 -58755895 + MIR SINE MIR 32 249 -13 23 0 0 0 chr11 92027893 92027916 -58755637 + AT_rich Low_complexity Low_complexity 1 23 0 238 336 36 58 chr11 92028127 92028264 -58755289 + MIR3 SINE MIR 13 146 -62 257 337 89 33 chr11 92028481 92028669 -58754884 - MIR SINE MIR -63 145 2 2017 29 0 0 chr11 92028996 92029236 -58754317 - L1PA4 LINE L1 -5 6150 5911 672 216 68 17 chr11 92029972 92030148 -58753405 + MER5A DNA MER1_type 5 189 0 422 286 169 31 chr11 92030548 92030803 -58752750 + L1MC/D LINE L1 5438 5727 -2081 12025 66 3 1 chr11 92030804 92033135 -58750418 + L1PA6 LINE L1 3820 6154 0 332 235 10 61 chr11 92033654 92033752 -58749801 + L2 LINE L2 3221 3313 0 480 267 90 59 chr11 92033965 92034220 -58749333 - L1ME LINE L1 -334 5787 5525 479 321 100 0 chr11 92034318 92034508 -58749045 - MIR SINE MIR 0 262 54 221 274 0 0 chr11 92034921 92034972 -58748581 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1416 174 74 0 chr11 92035130 92035429 -58748124 + L1MA10 LINE L1 6014 6334 0 258 292 195 9 chr11 92035434 92035547 -58748006 + MIR SINE MIR 21 154 -108 1590 125 4 0 chr11 92035668 92035900 -58747653 + MER2 DNA MER2_type 14 246 -99 267 31 0 0 chr11 92036000 92036032 -58747521 + (A)n Simple_repeat Simple_repeat 1 32 0 1147 261 126 16 chr11 92036171 92036872 -58746681 + L2 LINE L2 2531 3312 -1 422 323 45 18 chr11 92037097 92037320 -58746233 + MIR SINE MIR 34 262 0 182 333 48 48 chr11 92037825 92037993 -58745560 - L2 LINE L2 -74 3239 3072 431 319 17 0 chr11 92038536 92038652 -58744901 - L2 LINE L2 0 3313 3196 284 274 86 8 chr11 92038837 92038954 -58744599 - MIR SINE MIR -13 249 124 197 316 43 51 chr11 92039177 92039294 -58744259 + MIR SINE MIR 63 178 -84 407 334 79 79 chr11 92039892 92040092 -58743461 + L2 LINE L2 2869 3068 -204 185 62 0 31 chr11 92040092 92040124 -58743429 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 407 334 79 79 chr11 92040124 92040327 -58743226 + L2 LINE L2 3067 3272 0 208 167 64 39 chr11 92040701 92040779 -58742774 + A-rich Low_complexity Low_complexity 1 80 0 21 0 0 0 chr11 92044808 92044829 -58738724 + AT_rich Low_complexity Low_complexity 1 21 0 189 135 27 27 chr11 92045158 92045195 -58738358 - MIR SINE MIR -110 152 116 210 250 190 26 chr11 92045344 92045460 -58738093 + MIR SINE MIR 57 191 -71 234 286 176 3 chr11 92045471 92045834 -58737719 + L1MC/D LINE L1 4978 5403 -743 307 293 0 32 chr11 92045894 92046017 -58737536 + L1MC/D LINE L1 5539 5657 -2151 21 36 0 0 chr11 92046136 92046164 -58737389 + AT_rich Low_complexity Low_complexity 1 28 0 266 266 16 0 chr11 92046864 92046928 -58736625 + MIR3 SINE MIR 93 157 -51 656 226 0 0 chr11 92047032 92047147 -58736406 + MER5B DNA MER1_type 64 178 0 1053 169 51 37 chr11 92047155 92047428 -58736125 - MER58B DNA MER1_type 0 341 65 875 219 33 0 chr11 92047461 92047644 -58735909 + MER5A DNA MER1_type 1 189 0 24 0 0 0 chr11 92047912 92047936 -58735617 + AT_rich Low_complexity Low_complexity 1 24 0 722 279 34 5 chr11 92047940 92048148 -58735405 + MIR SINE MIR 47 260 -2 238 320 116 20 chr11 92048644 92048791 -58734762 - MIR SINE MIR -74 188 28 1103 246 111 39 chr11 92048898 92049365 -58734188 - MER20B DNA MER1_type -90 693 193 378 284 78 34 chr11 92049967 92050171 -58733382 + L2 LINE L2 1218 1430 -1884 4797 116 15 11 chr11 92050709 92051947 -58731606 - L1PA13 LINE L1 -2 6161 4874 5452 79 12 8 chr11 92051949 92052706 -58730847 - L1PA8 LINE L1 -16 6156 5357 * 7046 176 18 14 chr11 92052700 92054071 -58729482 - L1PA13 LINE L1 -1267 4879 3504 216 86 0 0 chr11 92054287 92054322 -58729231 + (T)n Simple_repeat Simple_repeat 1 35 0 314 180 0 0 chr11 92054322 92054383 -58729170 - L1PA13 LINE L1 -2629 3517 3457 745 156 0 0 chr11 92054383 92054505 -58729048 + L1PA13 LINE L1 3334 3455 -2691 1078 350 89 44 chr11 92054514 92055341 -58728212 + L2 LINE L2 2082 2983 -330 1010 237 14 18 chr11 92055341 92055560 -58727993 + MER20 DNA MER1_type 1 218 -1 1078 350 89 44 chr11 92055560 92055906 -58727647 + L2 LINE L2 2983 3312 -1 215 295 101 24 chr11 92055942 92056091 -58727462 + MIR SINE MIR 43 212 -50 337 247 123 6 chr11 92056361 92056523 -58727030 + L1ME4a LINE L1 5939 6119 -2 1994 131 7 0 chr11 92056653 92056943 -58726610 + AluSq SINE Alu 1 292 -21 505 236 135 0 chr11 92057013 92057161 -58726392 - MIR SINE MIR -12 250 83 203 314 31 70 chr11 92057265 92057494 -58726059 - L2 LINE L2 -181 3091 2872 247 330 34 0 chr11 92057852 92057940 -58725613 - MIR SINE MIR -86 176 86 21 57 0 0 chr11 92058168 92058203 -58725350 + AT_rich Low_complexity Low_complexity 1 35 0 6186 147 7 28 chr11 92059042 92059945 -58723608 - L1MA3 LINE L1 0 7724 6804 2079 115 11 7 chr11 92059945 92060232 -58723321 - AluSx SINE Alu -24 288 1 6186 147 7 28 chr11 92060232 92061224 -58722329 - L1MA3 LINE L1 -920 6804 5866 * 13701 185 60 29 chr11 92061223 92062938 -58720615 - L1MA3 LINE L1 -2209 5356 3696 429 20 0 0 chr11 92062938 92062988 -58720565 + (TG)n Simple_repeat Simple_repeat 2 51 0 13701 185 60 29 chr11 92062988 92064390 -58719163 - L1MA3 LINE L1 -3869 3696 2339 2174 102 3 7 chr11 92064390 92064684 -58718869 - AluSc SINE Alu -13 296 4 13701 185 60 29 chr11 92064684 92067108 -58716445 - L1MA3 LINE L1 -5226 2339 12 237 200 0 0 chr11 92067112 92067152 -58716401 + MER89 LTR ERV1 47 86 -473 * 1688 213 16 25 chr11 92067128 92067494 -58716059 + MER89 LTR ERV1 197 559 0 410 276 32 8 chr11 92067526 92067649 -58715904 - MER94 DNA DNA 0 134 9 434 342 36 16 chr11 92068555 92068748 -58714805 + MIR SINE MIR 66 262 0 8384 35 34 25 chr11 92068812 92069871 -58713682 - MER11C LTR ERVK -2 1069 1 365 241 26 69 chr11 92070323 92070439 -58713114 - L2 LINE L2 0 3272 3162 225 154 0 0 chr11 92070493 92070532 -58713021 + (CA)n Simple_repeat Simple_repeat 1 39 0 191 294 156 28 chr11 92070970 92071079 -58712474 - MIR SINE MIR -12 250 128 315 247 0 65 chr11 92071365 92071458 -58712095 - L1MC4 LINE L1 -1341 6701 6615 184 170 38 0 chr11 92071461 92071514 -58712039 + (TA)n Simple_repeat Simple_repeat 2 56 0 2116 37 103 0 chr11 92072047 92072319 -58711234 + AluY SINE Alu 1 300 -11 23 0 0 0 chr11 92072367 92072390 -58711163 + AT_rich Low_complexity Low_complexity 1 23 0 185 378 61 0 chr11 92072658 92072740 -58710813 + L2 LINE L2 2772 2858 -456 380 327 87 0 chr11 92073278 92073454 -58710099 + MIR SINE MIR 44 235 -27 269 377 172 15 chr11 92073449 92073722 -58709831 + L2 LINE L2 2633 2948 -366 * 204 333 0 0 chr11 92074240 92074297 -58709256 - L2 LINE L2 -1 3312 3256 207 336 27 82 chr11 92074473 92074619 -58708934 + L2 LINE L2 3159 3296 -17 269 249 65 101 chr11 92074640 92074698 -58708855 + L2 LINE L2 3139 3198 -115 1009 256 9 0 chr11 92074698 92074917 -58708636 - MER58A DNA MER1_type -3 221 1 269 249 65 101 chr11 92074917 92075027 -58708526 + L2 LINE L2 3198 3301 -12 * 909 263 48 0 chr11 92075015 92075243 -58708310 - MIR SINE MIR -19 243 5 260 291 100 0 chr11 92076469 92076579 -58706974 - MIR3 SINE MIR -3 205 85 860 258 96 0 chr11 92076799 92077028 -58706525 - MIR SINE MIR -9 253 3 260 344 0 22 chr11 92077311 92077401 -58706152 + L2 LINE L2 3004 3091 -181 183 286 0 48 chr11 92079330 92079393 -58704160 + L2 LINE L2 3234 3293 -20 444 313 133 0 chr11 92079768 92079982 -58703571 - MIR SINE MIR 0 262 15 1863 112 0 11 chr11 92080222 92080482 -58703071 - AluSx SINE Alu -17 295 39 234 91 0 0 chr11 92080578 92080611 -58702942 + (ATG)n Simple_repeat Simple_repeat 3 35 0 408 40 0 0 chr11 92081308 92081358 -58702195 + (TG)n Simple_repeat Simple_repeat 1 50 0 239 318 34 23 chr11 92081402 92081490 -58702063 - L2 LINE L2 0 3272 3184 436 332 36 5 chr11 92081889 92082082 -58701471 - MIR SINE MIR -28 234 36 313 359 28 14 chr11 92082143 92082288 -58701265 + MIR SINE MIR 40 186 -76 262 227 160 0 chr11 92082317 92082392 -58701161 + L2 LINE L2 3213 3299 -14 184 250 0 0 chr11 92082409 92082453 -58701100 + L2 LINE L2 3213 3256 -16 314 303 110 28 chr11 92083596 92083741 -58699812 - MIR3 SINE MIR -10 198 42 22 56 0 0 chr11 92083757 92083793 -58699760 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr11 92084188 92084210 -58699343 + AT_rich Low_complexity Low_complexity 1 22 0 230 287 58 81 chr11 92084411 92084585 -58698968 - MIR SINE MIR -6 256 87 21 0 0 0 chr11 92084807 92084828 -58698725 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 92085322 92085350 -58698203 + AT_rich Low_complexity Low_complexity 1 28 0 302 159 14 0 chr11 92085954 92086023 -58697530 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 305 285 63 5 chr11 92087789 92088010 -58695543 + L1ME4a LINE L1 5634 5867 -254 22 0 0 0 chr11 92088316 92088338 -58695215 + AT_rich Low_complexity Low_complexity 1 22 0 286 299 67 34 chr11 92088499 92088620 -58694933 - MIR SINE MIR -61 147 36 3608 62 13 0 chr11 92089489 92089959 -58693594 + L1PA7 LINE L1 5677 6152 -2 989 215 13 6 chr11 92090189 92090483 -58693070 - MLT1A1 LTR MaLR 0 365 1 373 274 118 33 chr11 92092376 92092621 -58690932 - L3 LINE CR1 -100 1477 1212 297 293 60 76 chr11 92092624 92092734 -58690819 + MIR SINE MIR 17 127 -135 2330 94 0 3 chr11 92092734 92093041 -58690512 - AluSq SINE Alu -7 306 1 297 293 60 76 chr11 92093041 92093179 -58690374 + MIR SINE MIR 127 261 -1 211 345 9 27 chr11 92093179 92093289 -58690264 - L3 LINE CR1 -392 1185 1078 1343 241 32 0 chr11 92093457 92093768 -58689785 - MER58B DNA MER1_type -2 339 19 492 346 57 0 chr11 92094100 92094328 -58689225 + MIR SINE MIR 12 252 -10 356 296 25 49 chr11 92094463 92094625 -58688928 - MER5A DNA MER1_type -14 175 18 403 257 97 89 chr11 92094956 92095461 -58688092 + MLT1J LTR MaLR 2 510 -1 389 339 57 83 chr11 92095710 92096046 -58687507 + L2 LINE L2 2945 3271 -1 26 0 0 0 chr11 92096293 92096319 -58687234 + AT_rich Low_complexity Low_complexity 1 26 0 336 280 83 72 chr11 92096802 92096995 -58686558 + MLT1L LTR MaLR 12 206 -409 220 184 0 0 chr11 92097042 92097080 -58686473 + CT-rich Low_complexity Low_complexity 2 39 0 311 246 138 7 chr11 92097160 92097298 -58686255 + MLT1L LTR MaLR 459 614 -1 6924 48 15 5 chr11 92098040 92099601 -58683952 + L1PA5 LINE L1 4590 6154 0 246 374 81 0 chr11 92100800 92100923 -58682630 + L2 LINE L2 3140 3272 0 1301 283 100 67 chr11 92101477 92102377 -58681176 + L2 LINE L2 1697 2626 -688 1579 247 26 14 chr11 92102388 92102898 -58680655 + L1M4 LINE L1 3655 4178 -1968 669 234 12 12 chr11 92102901 92103072 -58680481 + L1PBa LINE L1 46 216 -6647 * 8723 144 57 12 chr11 92103049 92105493 -58678060 + L1PBa LINE L1 1392 3939 -2923 2087 118 7 0 chr11 92105503 92105800 -58677753 + AluSx SINE Alu 11 309 -3 211 209 132 44 chr11 92106878 92106969 -58676584 + MIR SINE MIR 105 203 -59 * 524 254 7 36 chr11 92106961 92107099 -58676454 - L2 LINE L2 -28 3285 3152 1488 293 89 40 chr11 92107203 92107321 -58676232 + L2 LINE L2 1917 2028 -1286 1933 143 31 0 chr11 92107321 92107608 -58675945 - AluSg SINE Alu -14 296 1 1488 293 89 40 chr11 92107608 92108249 -58675304 + L2 LINE L2 2028 2714 -600 424 283 109 49 chr11 92108254 92108468 -58675085 + MLT1H LTR MaLR 1 230 -325 351 213 120 67 chr11 92108593 92108743 -58674810 + MLT1H LTR MaLR 342 499 -43 251 302 0 23 chr11 92108985 92109071 -58674482 + MLT1H-int LTR MaLR 399 482 -889 2261 118 0 0 chr11 92109850 92110156 -58673397 + AluSx SINE Alu 1 306 -6 318 239 182 100 chr11 92110173 92110447 -58673106 + MLT1H-int LTR MaLR 1071 1731 -4 506 285 59 50 chr11 92110452 92110955 -58672598 + MLT1H LTR MaLR 1 590 0 569 338 67 54 chr11 92110959 92111552 -58672001 + L2 LINE L2 2711 3311 -2 24 0 0 0 chr11 92111575 92111599 -58671954 + AT_rich Low_complexity Low_complexity 1 24 0 402 279 117 35 chr11 92111795 92112063 -58671490 + MLT1J2 LTR MaLR 85 385 -65 2465 229 32 5 chr11 92112068 92112693 -58670860 + L1M4 LINE L1 4017 4658 -1488 1025 276 58 0 chr11 92112700 92113008 -58670545 - L1ME3A LINE L1 -67 6103 5778 753 269 84 0 chr11 92113295 92113652 -58669901 - MER113 DNA MER1_type? -130 391 5 377 296 145 0 chr11 92114014 92114186 -58669367 + MER117 DNA MER1_type 1 197 0 296 331 148 0 chr11 92114635 92114804 -58668749 - MIR SINE MIR -13 249 56 299 299 0 0 chr11 92115188 92115255 -58668298 - L2 LINE L2 -2 3270 3204 431 215 15 89 chr11 92115928 92116063 -58667490 + MIR SINE MIR 84 208 -54 238 240 78 116 chr11 92116531 92116660 -58666893 + L2 LINE L2 3143 3266 -6 734 260 100 75 chr11 92117541 92117860 -58665693 - L3 LINE CR1 -1 1576 1250 351 352 171 17 chr11 92118133 92118477 -58665076 + L2 LINE L2 2482 2878 -436 219 331 131 52 chr11 92118514 92118895 -58664658 - L2 LINE L2 -1215 2099 1689 1818 183 0 7 chr11 92119529 92119830 -58663723 - AluJb SINE Alu -13 299 1 413 282 37 133 chr11 92120557 92120798 -58662755 + MIR SINE MIR 35 252 -10 382 187 9 9 chr11 92120876 92120983 -58662570 + (TA)n Simple_repeat Simple_repeat 2 108 0 338 300 0 0 chr11 92120989 92121079 -58662474 - L1MC4 LINE L1 -1339 6703 6614 * 361 268 0 21 chr11 92121013 92121110 -58662443 + L1MC4 LINE L1 6614 6708 -1334 469 382 85 4 chr11 92121528 92121774 -58661779 + L2 LINE L2 3007 3272 0 261 333 0 14 chr11 92122581 92122650 -58660903 - L2 LINE L2 0 3272 3205 202 283 61 71 chr11 92122964 92123063 -58660490 + MIR SINE MIR 38 135 -127 373 91 18 0 chr11 92123126 92123181 -58660372 - L1P LINE L1 -1076 5070 5015 * 626 58 0 0 chr11 92123177 92123264 -58660289 + L1P LINE L1 5096 5182 -964 21 36 0 0 chr11 92123942 92123970 -58659583 + AT_rich Low_complexity Low_complexity 1 28 0 262 304 104 26 chr11 92124243 92124358 -58659195 + MIR SINE MIR 20 143 -119 229 366 38 38 chr11 92125210 92125396 -58658157 - L2 LINE L2 -189 3083 2898 328 308 11 0 chr11 92125648 92125739 -58657814 - MER117 DNA MER1_type -38 159 68 198 91 0 0 chr11 92126745 92126778 -58656775 + (CAA)n Simple_repeat Simple_repeat 2 34 0 342 250 104 73 chr11 92127178 92127370 -58656183 - MIR SINE MIR -64 198 1 261 338 135 0 chr11 92127370 92127484 -58656069 + L2 LINE L2 3141 3272 0 290 276 73 57 chr11 92127526 92127649 -58655904 - L2 LINE L2 -12 3260 3136 1757 67 5 0 chr11 92128250 92128473 -58655080 + AluY SINE Alu 1 224 -87 5150 57 7 40 chr11 92128573 92129144 -58654409 - L1PA7 LINE L1 -209 5945 5404 2894 18 0 0 chr11 92129144 92129476 -58654077 - L1PA3 LINE L1 0 6155 5824 5150 57 7 40 chr11 92129476 92129699 -58653854 - L1PA7 LINE L1 -750 5404 5175 248 181 69 42 chr11 92130005 92130077 -58653476 - MIR SINE MIR -10 252 179 2079 95 3 36 chr11 92130468 92130774 -58652779 - AluSc SINE Alu -13 296 1 648 175 9 0 chr11 92130776 92130890 -58652663 - AluSg/x SINE Alu -7 303 189 231 247 141 12 chr11 92131557 92131642 -58651911 + MIR3 SINE MIR 112 207 -1 28 29 0 0 chr11 92131991 92132026 -58651527 + AT_rich Low_complexity Low_complexity 1 35 0 240 353 58 19 chr11 92132160 92132316 -58651237 + MIR SINE MIR 8 169 -93 273 189 19 0 chr11 92132435 92132488 -58651065 + L2 LINE L2 3258 3311 -2 233 406 40 0 chr11 92132630 92132731 -58650822 + L2 LINE L2 3109 3213 -59 2057 124 0 13 chr11 92132849 92133148 -58650405 - AluSx SINE Alu -15 297 3 2654 239 38 50 chr11 92134611 92135114 -58648439 + L1M3b LINE L1 6 499 -5782 1942 145 7 0 chr11 92135114 92135410 -58648143 + AluSx SINE Alu 1 298 -14 2654 239 38 50 chr11 92135410 92135643 -58647910 + L1M3b LINE L1 499 733 -5548 * 2706 271 33 31 chr11 92135638 92136557 -58646996 + L1M3b LINE L1 628 1529 -4752 375 324 51 99 chr11 92137142 92137435 -58646118 + L2 LINE L2 2966 3244 -28 272 274 11 17 chr11 92138109 92138288 -58645265 + CT-rich Low_complexity Low_complexity 3 180 0 365 313 24 54 chr11 92138759 92138925 -58644628 - MIR SINE MIR 0 262 102 999 47 0 0 chr11 92138958 92139085 -58644468 - L1PA4 LINE L1 -3 6152 6026 1035 267 56 19 chr11 92139115 92139432 -58644121 + MLT1H LTR MaLR 1 372 -177 1642 242 42 30 chr11 92139520 92139946 -58643607 + LTR40c LTR ERVL 35 465 0 244 171 157 14 chr11 92139951 92140021 -58643532 + MLT1H LTR MaLR 468 547 -2 505 253 77 72 chr11 92140823 92141017 -58642536 - MIR3 SINE MIR -7 201 7 372 346 39 73 chr11 92141645 92142162 -58641391 + L2 LINE L2 2359 2857 -457 1317 106 28 5 chr11 92142438 92142655 -58640898 - L1MA2 LINE L1 -7 6297 6076 303 266 97 53 chr11 92142743 92142856 -58640697 + MER5B DNA MER1_type 2 119 -59 * 501 325 164 12 chr11 92142847 92143176 -58640377 + L2 LINE L2 2910 3288 -25 240 263 18 0 chr11 92143319 92143376 -58640177 - L2 LINE L2 -211 3061 3004 2460 100 11 3 chr11 92143783 92144133 -58639420 + THE1A LTR MaLR 1 353 -2 10978 112 10 3 chr11 92144135 92145705 -58637848 + THE1A-int LTR MaLR 1 1580 0 2608 101 0 3 chr11 92145705 92146061 -58637492 + THE1A LTR MaLR 1 355 0 306 0 0 0 chr11 92146076 92146110 -58637443 + (TG)n Simple_repeat Simple_repeat 2 35 0 239 351 48 36 chr11 92146345 92146510 -58637043 - L2 LINE L2 -262 3010 2844 418 330 134 34 chr11 92146610 92147019 -58636534 - L2 LINE L2 -643 2671 2222 2215 100 0 0 chr11 92148530 92148821 -58634732 + AluSc SINE Alu 19 309 0 190 277 169 36 chr11 92148877 92148960 -58634593 - MIR SINE MIR -123 139 46 28 48 0 0 chr11 92149185 92149227 -58634326 + AT_rich Low_complexity Low_complexity 1 42 0 345 172 32 0 chr11 92149319 92149412 -58634141 + (TA)n Simple_repeat Simple_repeat 2 97 0 21 36 0 0 chr11 92149439 92149467 -58634086 + AT_rich Low_complexity Low_complexity 1 28 0 262 265 73 73 chr11 92149593 92149744 -58633809 + L3b LINE CR1 1221 1371 -212 589 267 138 56 chr11 92150666 92151295 -58632258 - L1ME3 LINE L1 -218 5944 5266 1199 185 0 75 chr11 92151295 92151549 -58632004 - AluJo SINE Alu -77 235 1 270 0 0 0 chr11 92151558 92151588 -58631965 + (T)n Simple_repeat Simple_repeat 1 30 0 2844 13 0 0 chr11 92151754 92152065 -58631488 - AluYa5 SINE Alu 0 311 1 382 213 113 27 chr11 92152148 92152298 -58631255 - L1 LINE L1 -1076 5070 4908 382 202 85 0 chr11 92152298 92152392 -58631161 - MIR SINE MIR -65 197 96 495 291 91 17 chr11 92152416 92152832 -58630721 - L1 LINE L1 -1314 4832 4386 2108 117 3 3 chr11 92152952 92153242 -58630311 + AluSx SINE Alu 8 297 -15 484 296 54 4 chr11 92153262 92153542 -58630011 - L1MCa LINE L1 -3609 2817 2524 270 137 20 20 chr11 92153552 92153603 -58629950 + U2 snRNA snRNA 1 51 -137 227 196 0 0 chr11 92153639 92153685 -58629868 - L1MCa LINE L1 -3955 2473 2428 314 276 98 30 chr11 92153687 92153890 -58629663 - L1MCa LINE L1 -4022 2404 2188 327 191 214 0 chr11 92155234 92155318 -58628235 - L2 LINE L2 -5 3267 3166 1570 90 0 0 chr11 92155625 92155837 -58627716 + MER41B LTR ERV1 1 212 -423 1447 97 5 19 chr11 92155841 92156057 -58627496 + MER41B LTR ERV1 423 635 0 309 51 0 0 chr11 92158300 92158339 -58625214 + (TG)n Simple_repeat Simple_repeat 2 40 0 209 56 0 28 chr11 92158392 92158428 -58625125 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1954 144 20 7 chr11 92158460 92158758 -58624795 + AluSx SINE Alu 1 302 -10 540 191 52 17 chr11 92158802 92158917 -58624636 + MER5B DNA MER1_type 4 122 -56 1789 167 7 7 chr11 92158937 92159231 -58624322 - AluJo SINE Alu -18 294 1 2503 77 7 0 chr11 92159445 92159891 -58623662 + L1PA7 LINE L1 5044 5491 -663 869 96 0 0 chr11 92159908 92160023 -58623530 + AluY SINE Alu 18 132 -179 207 0 0 0 chr11 92160023 92160046 -58623507 + (A)n Simple_repeat Simple_repeat 1 23 0 180 0 0 0 chr11 92160046 92160066 -58623487 + (G)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr11 92160082 92160105 -58623448 + GC_rich Low_complexity Low_complexity 1 23 0 712 100 9 9 chr11 92160208 92160307 -58623246 + AluSg/x SINE Alu 190 291 -18 5186 62 3 9 chr11 92160307 92160990 -58622563 + L1PA7 LINE L1 5476 6154 0 338 250 24 0 chr11 92161052 92161136 -58622417 - MER103 DNA DNA -69 97 12 202 186 23 0 chr11 92161519 92161562 -58621991 - L2 LINE L2 0 3272 3229 239 301 107 10 chr11 92161878 92161981 -58621572 - L2 LINE L2 -591 2723 2611 1526 168 0 30 chr11 92162329 92162591 -58620962 - AluJb SINE Alu -58 254 1 315 49 0 0 chr11 92163363 92163404 -58620149 + (TC)n Simple_repeat Simple_repeat 2 42 0 1661 151 0 60 chr11 92163405 92163704 -58619849 - AluSq SINE Alu -32 281 1 431 291 117 24 chr11 92163729 92163942 -58619611 + L3 LINE CR1 1332 1564 -13 276 228 0 166 chr11 92164031 92164120 -58619433 - L2 LINE L2 -18 3295 3237 2229 121 3 0 chr11 92164120 92164425 -58619128 + AluSx SINE Alu 1 306 -6 276 228 0 166 chr11 92164425 92164480 -58619073 - L2 LINE L2 -76 3237 3175 360 245 51 79 chr11 92164883 92165137 -58618416 + L1MC5 LINE L1 7246 7470 -561 220 301 65 11 chr11 92165181 92165274 -58618279 - MIR SINE MIR -92 170 73 273 304 130 22 chr11 92165347 92165469 -58618084 - MIR3 SINE MIR -41 167 31 552 284 99 0 chr11 92165469 92165631 -58617922 + MER5B DNA MER1_type 1 178 0 1371 191 3 60 chr11 92165825 92166140 -58617413 + AluJo SINE Alu 1 297 -15 2005 140 0 0 chr11 92166144 92166429 -58617124 + AluSx SINE Alu 1 285 -27 1414 180 4 4 chr11 92166932 92167171 -58616382 + AluJb SINE Alu 1 239 -73 519 177 0 10 chr11 92167171 92167267 -58616286 + AluJb SINE Alu 183 277 -35 1060 64 26 0 chr11 92167267 92167423 -58616130 + (GAAA)n Simple_repeat Simple_repeat 1 160 0 194 91 30 0 chr11 92167424 92167457 -58616096 + (CAGG)n Simple_repeat Simple_repeat 4 37 0 187 319 97 18 chr11 92167664 92167777 -58615776 - MIR SINE MIR -66 142 21 180 152 0 0 chr11 92168412 92168445 -58615108 + (CA)n Simple_repeat Simple_repeat 2 34 0 330 277 134 45 chr11 92168549 92168751 -58614802 + L1ME LINE L1 5538 5757 -364 309 284 0 0 chr11 92169344 92169411 -58614142 - L2 LINE L2 -22 3291 3225 390 280 35 42 chr11 92169508 92169651 -58613902 - MIR SINE MIR -55 207 66 202 370 34 8 chr11 92169684 92169803 -58613750 + MIR3 SINE MIR 82 203 -5 221 310 101 54 chr11 92170473 92170602 -58612951 + L2 LINE L2 3138 3272 0 261 222 74 25 chr11 92170656 92170737 -58612816 + MIR3 SINE MIR 85 169 -39 199 184 105 26 chr11 92170853 92170929 -58612624 + L2 LINE L2 2400 2481 -833 636 247 19 19 chr11 92171012 92171166 -58612387 - L2 LINE L2 0 3313 3160 263 280 112 9 chr11 92171313 92171420 -58612133 - MIR SINE MIR -69 193 76 207 374 15 73 chr11 92171526 92171732 -58611821 - L2 LINE L2 -349 2965 2772 295 281 45 11 chr11 92171788 92171877 -58611676 - L2 LINE L2 -19 3294 3203 22 0 0 0 chr11 92172236 92172258 -58611295 + AT_rich Low_complexity Low_complexity 1 22 0 285 323 61 65 chr11 92172517 92172780 -58610773 - L1ME LINE L1 -451 5670 5409 310 262 74 49 chr11 92173653 92173775 -58609778 + L1ME4a LINE L1 5980 6104 -17 22 0 0 0 chr11 92173829 92173851 -58609702 + AT_rich Low_complexity Low_complexity 1 22 0 440 306 86 30 chr11 92174896 92175128 -58608425 + MIR SINE MIR 11 255 -7 793 259 40 36 chr11 92176084 92176308 -58607245 - MIR SINE MIR -30 232 8 867 267 24 12 chr11 92176402 92176649 -58606904 + MIR SINE MIR 13 262 0 286 287 102 0 chr11 92176800 92176908 -58606645 + MIR SINE MIR 88 206 -56 249 194 14 14 chr11 92177123 92177195 -58606358 + L1ME LINE L1 5709 5780 -341 402 287 38 19 chr11 92177237 92177394 -58606159 + L1MC/D LINE L1 5612 5771 -2037 30 83 0 0 chr11 92177482 92177554 -58605999 + AT_rich Low_complexity Low_complexity 1 72 0 22 0 0 0 chr11 92177591 92177613 -58605940 + AT_rich Low_complexity Low_complexity 1 22 0 345 307 67 114 chr11 92178071 92178284 -58605269 + L2 LINE L2 2873 3058 -214 393 22 0 0 chr11 92178284 92178330 -58605223 + (CA)n Simple_repeat Simple_repeat 2 47 0 345 307 67 114 chr11 92178330 92178536 -58605017 + L2 LINE L2 3058 3272 0 289 259 98 14 chr11 92179023 92179166 -58604387 + L1ME LINE L1 5651 5805 -316 1579 251 60 26 chr11 92179211 92179742 -58603811 - L1ME1 LINE L1 -9 6157 5609 31 58 0 0 chr11 92179921 92179973 -58603580 + AT_rich Low_complexity Low_complexity 1 52 0 346 321 130 11 chr11 92179981 92180165 -58603388 - MIR SINE MIR -10 252 47 413 345 30 10 chr11 92180673 92180876 -58602677 + MIR SINE MIR 56 262 0 256 300 25 0 chr11 92181363 92181443 -58602110 - L2 LINE L2 0 3313 3232 21 0 0 0 chr11 92183027 92183048 -58600505 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 92183082 92183103 -58600450 + (A)n Simple_repeat Simple_repeat 1 21 0 305 350 84 84 chr11 92183141 92183475 -58600078 - L2 LINE L2 0 3272 2939 199 312 65 65 chr11 92183885 92183978 -58599575 + MIR SINE MIR 67 159 -103 247 329 13 0 chr11 92184122 92184201 -58599352 - MIR SINE MIR -112 150 71 3696 76 0 0 chr11 92184247 92184722 -58598831 - L1PA7 LINE L1 0 6154 5680 5159 73 7 0 chr11 92184249 92184923 -58598630 - L1PA7 LINE L1 0 6154 5476 181 344 143 75 chr11 92184931 92184959 -58598594 - L2 LINE L2 -1 3271 3246 394 252 22 30 chr11 92184959 92185094 -58598459 + MER94 DNA DNA 1 134 0 181 344 143 75 chr11 92185094 92185493 -58598060 - L2 LINE L2 -26 3246 2815 410 291 96 31 chr11 92185887 92186179 -58597374 + L1ME1 LINE L1 562 872 -5247 269 281 132 34 chr11 92186181 92186530 -58597023 + L1ME1 LINE L1 2502 2884 -3245 21 89 0 0 chr11 92186608 92186664 -58596889 + AT_rich Low_complexity Low_complexity 1 56 0 212 267 0 0 chr11 92186752 92186812 -58596741 + A-rich Low_complexity Low_complexity 1 60 0 312 242 61 0 chr11 92186820 92186919 -58596634 + L1ME1 LINE L1 3794 3898 -2231 594 295 135 47 chr11 92187040 92188359 -58595194 + L1ME1 LINE L1 4441 5889 -256 316 333 51 26 chr11 92188543 92188699 -58594854 - L2 LINE L2 -612 2702 2543 221 234 143 65 chr11 92190670 92190824 -58592729 - MIR SINE MIR 0 262 97 189 362 14 0 chr11 92191217 92191286 -58592267 + L2 LINE L2 3234 3303 -10 23 0 0 0 chr11 92191710 92191733 -58591820 + AT_rich Low_complexity Low_complexity 1 23 0 183 339 92 8 chr11 92191791 92191921 -58591632 - MIR SINE MIR -12 250 110 2748 3 0 10 chr11 92192120 92192422 -58591131 - AluYa5 SINE Alu -12 299 1 2018 117 7 0 chr11 92194110 92194432 -58589121 - AluSx SINE Alu 0 324 1 2035 154 94 10 chr11 92194885 92195280 -58588273 - MSTA LTR MaLR 0 428 1 333 172 0 0 chr11 92195339 92195403 -58588150 + (TA)n Simple_repeat Simple_repeat 1 64 0 291 290 0 21 chr11 92195403 92195496 -58588057 + MIR SINE MIR 156 246 -16 283 341 47 0 chr11 92195579 92195664 -58587889 - L2 LINE L2 -17 3255 3167 230 344 83 0 chr11 92196052 92196148 -58587405 + L2 LINE L2 3208 3311 -2 221 313 72 12 chr11 92196900 92196983 -58586570 + L2 LINE L2 3210 3297 -16 252 421 0 0 chr11 92197010 92197136 -58586417 + GA-rich Low_complexity Low_complexity 3 128 0 22 0 0 0 chr11 92197798 92197820 -58585733 + AT_rich Low_complexity Low_complexity 1 22 0 360 0 0 0 chr11 92198241 92198281 -58585272 + (TC)n Simple_repeat Simple_repeat 1 40 0 360 0 0 0 chr11 92198280 92198320 -58585233 + (CA)n Simple_repeat Simple_repeat 1 40 0 273 252 44 104 chr11 92198435 92198570 -58584983 + L2 LINE L2 3187 3313 0 588 293 121 0 chr11 92199049 92199264 -58584289 + MIR SINE MIR 11 251 -11 283 393 29 23 chr11 92200411 92200584 -58582969 + L2 LINE L2 2712 2885 -429 214 250 115 48 chr11 92200886 92200990 -58582563 + L2 LINE L2 3200 3310 -3 189 0 0 0 chr11 92201277 92201298 -58582255 + (CATA)n Simple_repeat Simple_repeat 1 21 0 219 380 50 0 chr11 92201386 92201486 -58582067 + MIR SINE MIR 31 135 -73 2264 155 39 0 chr11 92201594 92201980 -58581573 + MER57A LTR ERV1 2 402 -1 23 54 0 0 chr11 92202795 92202832 -58580721 + AT_rich Low_complexity Low_complexity 1 37 0 682 264 114 23 chr11 92202912 92203132 -58580421 - MIR SINE MIR -21 241 2 474 340 52 5 chr11 92203629 92203841 -58579712 + MIR SINE MIR 41 262 0 193 311 0 0 chr11 92203885 92203930 -58579623 + L2 LINE L2 2985 3029 -243 1935 141 0 23 chr11 92204045 92204349 -58579204 - AluSq SINE Alu -16 297 1 188 241 56 19 chr11 92205176 92205230 -58578323 - L3 LINE CR1 -80 1497 1442 459 319 97 38 chr11 92205612 92205850 -58577703 - MIR SINE MIR 0 262 11 204 40 0 0 chr11 92206047 92206072 -58577481 + (TG)n Simple_repeat Simple_repeat 2 26 0 2151 128 0 0 chr11 92207921 92208226 -58575327 + AluSg SINE Alu 1 305 -5 24 53 0 0 chr11 92208252 92208290 -58575263 + AT_rich Low_complexity Low_complexity 1 38 0 1070 266 12 8 chr11 92208383 92208639 -58574914 + MIR SINE MIR 6 262 0 504 244 194 30 chr11 92208887 92209088 -58574465 + MIR SINE MIR 8 241 -21 258 226 19 0 chr11 92209206 92209259 -58574294 + MER4-int LTR ERV1 1102 1155 -5443 216 231 0 0 chr11 92209268 92209320 -58574233 + (TA)n Simple_repeat Simple_repeat 1 52 0 454 77 0 26 chr11 92209327 92209405 -58574148 + (TG)n Simple_repeat Simple_repeat 2 77 0 313 294 44 66 chr11 92209730 92209866 -58573687 - L2 LINE L2 -2 3270 3138 555 310 49 10 chr11 92211131 92211354 -58572199 - MIR SINE MIR -21 241 10 1835 98 0 51 chr11 92211687 92212002 -58571551 + AluY SINE Alu 1 299 -12 490 320 95 5 chr11 92212419 92212641 -58570912 + MIR SINE MIR 21 262 0 2483 69 0 0 chr11 92212745 92213048 -58570505 - AluY SINE Alu -8 303 1 181 262 49 16 chr11 92214063 92214124 -58569429 - L2 LINE L2 -1 3271 3209 779 272 46 13 chr11 92215176 92215415 -58568138 - MIR SINE MIR 0 262 16 1646 209 14 74 chr11 92215779 92216224 -58567329 + MSTB1 LTR MaLR 2 419 -13 375 335 6 22 chr11 92217428 92217607 -58565946 + L2 LINE L2 1745 1920 -1394 330 283 75 17 chr11 92217835 92217955 -58565598 - MIR SINE MIR -123 139 13 240 35 0 0 chr11 92218127 92218156 -58565397 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 252 0 0 0 chr11 92218155 92218183 -58565370 + (TA)n Simple_repeat Simple_repeat 1 28 0 319 286 8 38 chr11 92218187 92218320 -58565233 - L1MC/D LINE L1 -2132 5676 5548 289 253 156 40 chr11 92218338 92218563 -58564990 + L2 LINE L2 1942 2192 -1122 395 359 58 32 chr11 92219608 92219920 -58563633 - L2 LINE L2 -779 2535 2216 575 313 95 5 chr11 92219955 92220166 -58563387 - MIR SINE MIR -16 246 17 2163 118 7 0 chr11 92220215 92220512 -58563041 - AluSx SINE Alu -13 299 1 259 283 102 32 chr11 92220609 92220796 -58562757 - L3 LINE CR1 -191 1386 1187 191 231 39 0 chr11 92221552 92221604 -58561949 + L2 LINE L2 3171 3224 -89 243 331 77 0 chr11 92221730 92221860 -58561693 + MIR SINE MIR 110 249 -13 426 294 40 16 chr11 92222863 92222989 -58560564 + MIR SINE MIR 16 144 -64 189 94 0 0 chr11 92223003 92223035 -58560518 + (T)n Simple_repeat Simple_repeat 1 32 0 291 337 68 43 chr11 92223960 92224123 -58559430 + MIR SINE MIR 52 218 -44 558 269 129 0 chr11 92224219 92224405 -58559148 - MIR SINE MIR -2 260 51 195 139 0 0 chr11 92224450 92224486 -58559067 + (TAA)n Simple_repeat Simple_repeat 1 36 0 1944 173 3 13 chr11 92224742 92225054 -58558499 - MER1B DNA MER1_type 0 339 31 538 255 20 88 chr11 92225135 92225339 -58558214 + MLT1J LTR MaLR 1 190 -321 429 327 31 19 chr11 92225396 92225555 -58557998 + MLT1J LTR MaLR 226 386 -125 2036 188 0 22 chr11 92225608 92225762 -58557791 + MLT1A1 LTR MaLR 13 169 -196 2430 179 17 0 chr11 92225762 92226181 -58557372 + MSTB LTR MaLR 1 426 0 2036 188 0 22 chr11 92226181 92226387 -58557166 + MLT1A1 LTR MaLR 169 365 0 236 243 171 0 chr11 92226389 92226459 -58557094 + MLT1J LTR MaLR 428 509 -2 1886 256 74 32 chr11 92227024 92227574 -58555979 - MER77 LTR ERV1 -6 599 53 225 0 0 0 chr11 92228474 92228499 -58555054 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2012 109 63 0 chr11 92229472 92229757 -58553796 - AluSp SINE Alu -10 303 1 2098 135 0 10 chr11 92229786 92230089 -58553464 + AluSx SINE Alu 3 302 -10 292 297 0 0 chr11 92230205 92230306 -58553247 + AluSp/q SINE Alu 203 303 0 189 0 0 0 chr11 92230728 92230749 -58552804 + (TA)n Simple_repeat Simple_repeat 1 21 0 310 265 111 17 chr11 92231094 92231211 -58552342 - MER94 DNA DNA 0 134 7 261 0 0 0 chr11 92231780 92231809 -58551744 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 235 273 11 34 chr11 92232375 92232463 -58551090 + MLT1I LTR MaLR 62 147 -262 593 256 241 0 chr11 92232724 92232927 -58550626 - MIR SINE MIR -4 258 7 346 357 56 75 chr11 92232959 92233332 -58550221 + L2 LINE L2 2901 3266 -6 993 194 21 154 chr11 92233612 92234043 -58549510 + MLT2D LTR ERVL 45 513 -7 320 275 0 0 chr11 92234142 92234233 -58549320 + (TA)n Simple_repeat Simple_repeat 1 91 0 280 280 77 95 chr11 92234257 92234425 -58549128 - MIR SINE MIR -96 166 2 2113 133 0 7 chr11 92234990 92235298 -58548255 - AluSx SINE Alu -6 306 1 195 329 13 13 chr11 92235478 92235557 -58547996 + MIR3 SINE MIR 11 89 -119 661 259 185 83 chr11 92236377 92236809 -58546744 - L2 LINE L2 -2 3311 2836 561 241 38 111 chr11 92237118 92237379 -58546174 + MLT1J2 LTR MaLR 23 264 -186 209 354 46 34 chr11 92237380 92237633 -58545920 - L2 LINE L2 -260 3012 2751 349 246 147 19 chr11 92238151 92238279 -58545274 - MIR SINE MIR -50 158 20 1773 180 0 26 chr11 92238596 92238902 -58544651 - AluJb SINE Alu -14 298 1 224 324 82 109 chr11 92239535 92239902 -58543651 - L2 LINE L2 -2 3270 2914 427 236 157 99 chr11 92240164 92240268 -58543285 + MLT1J LTR MaLR 218 315 -196 2092 171 80 5 chr11 92240268 92240666 -58542887 - MSTA LTR MaLR 0 428 1 427 236 157 99 chr11 92240666 92240803 -58542750 + MLT1J LTR MaLR 315 473 -38 250 244 37 85 chr11 92240847 92240929 -58542624 + MIR SINE MIR 7 84 -178 180 0 0 0 chr11 92241120 92241140 -58542413 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 259 189 19 0 chr11 92241884 92241937 -58541616 - L2 LINE L2 -4 3309 3256 228 286 36 60 chr11 92243903 92243987 -58539566 - MIR SINE MIR -125 137 56 198 308 82 51 chr11 92244118 92244313 -58539240 - L2 LINE L2 0 3313 3113 254 297 178 25 chr11 92244340 92244599 -58538954 - L2 LINE L2 -254 3018 2711 1173 227 34 52 chr11 92245102 92245393 -58538160 + AluJo SINE Alu 2 287 -15 372 374 84 5 chr11 92245934 92246148 -58537405 + MIR SINE MIR 14 244 -18 275 324 96 2 chr11 92246277 92246438 -58537115 + MIR SINE MIR 30 202 -60 801 260 114 5 chr11 92247124 92247343 -58536210 - MIR SINE MIR -1 261 19 282 284 37 12 chr11 92248131 92248212 -58535341 + MIR SINE MIR 31 113 -149 397 214 24 12 chr11 92248446 92248530 -58535023 - L2 LINE L2 0 3272 3188 233 313 214 0 chr11 92248780 92248911 -58534642 - MIR SINE MIR -30 232 74 2016 154 3 21 chr11 92249410 92249735 -58533818 - MSTB1 LTR MaLR -113 319 1 312 259 94 71 chr11 92249736 92249906 -58533647 + MIR SINE MIR 57 230 -32 209 338 100 27 chr11 92250353 92250494 -58533059 + MIR3 SINE MIR 7 155 -77 218 319 64 11 chr11 92250582 92250676 -58532877 - L2 LINE L2 -261 3011 2913 515 277 47 52 chr11 92252050 92252276 -58531277 + MIR SINE MIR 9 234 -28 441 319 37 4 chr11 92252530 92252691 -58530862 - MIR3 SINE MIR -31 177 30 324 336 103 0 chr11 92252720 92252836 -58530717 + L2 LINE L2 3145 3272 0 2200 47 69 4 chr11 92253212 92253486 -58530067 - AluY SINE Alu -19 292 1 198 0 0 0 chr11 92254130 92254152 -58529401 + (T)n Simple_repeat Simple_repeat 1 22 0 748 303 123 3 chr11 92254299 92254632 -58528921 + LTR33A LTR ERVL 142 514 -9 391 239 134 0 chr11 92254756 92254890 -58528663 + MIR SINE MIR 111 262 0 322 346 37 9 chr11 92255979 92256086 -58527467 - L2 LINE L2 -1 3271 3162 207 171 0 24 chr11 92256539 92256580 -58526973 + L2 LINE L2 3215 3254 -18 210 91 0 0 chr11 92257294 92257327 -58526226 + (CA)n Simple_repeat Simple_repeat 2 34 0 1905 141 48 95 chr11 92257458 92257919 -58525634 + L1MA7 LINE L1 5842 6280 -11 705 325 4 20 chr11 92258113 92258359 -58525194 - MIR SINE MIR -13 249 8 233 356 29 78 chr11 92258587 92258792 -58524761 + L2 LINE L2 2992 3186 -86 231 88 0 0 chr11 92260301 92260335 -58523218 + (TAA)n Simple_repeat Simple_repeat 2 35 0 526 283 185 5 chr11 92260338 92260543 -58523010 - MIR SINE MIR -10 252 11 344 384 61 17 chr11 92261140 92261440 -58522113 + L2 LINE L2 2770 3083 -189 310 321 115 11 chr11 92262641 92262830 -58520723 - MIR SINE MIR -44 218 12 691 269 73 29 chr11 92263723 92263968 -58519585 - MIR SINE MIR -1 261 6 378 245 68 27 chr11 92264302 92264449 -58519104 - MIR SINE MIR -18 244 92 255 314 14 0 chr11 92264512 92264582 -58518971 - L2 LINE L2 -823 2491 2421 479 222 24 16 chr11 92265058 92265184 -58518369 - MIR SINE MIR -11 251 125 439 311 55 18 chr11 92265815 92265979 -58517574 - MIR SINE MIR -41 221 52 240 307 0 45 chr11 92266892 92266980 -58516573 + L3 LINE CR1 1363 1446 -131 353 314 96 18 chr11 92267378 92267598 -58515955 + MIR SINE MIR 20 256 -6 26 30 0 0 chr11 92267692 92267725 -58515828 + AT_rich Low_complexity Low_complexity 1 33 0 206 348 78 26 chr11 92268133 92268248 -58515305 - MIR SINE MIR -114 148 28 228 326 53 11 chr11 92268763 92268858 -58514695 + MIR SINE MIR 47 145 -63 193 323 118 112 chr11 92269070 92269231 -58514322 - MIR3 SINE MIR -15 193 32 279 185 148 25 chr11 92269526 92269607 -58513946 + L2 LINE L2 3223 3313 0 591 328 62 52 chr11 92270111 92270419 -58513134 + L2 LINE L2 2962 3272 0 270 0 0 0 chr11 92271357 92271387 -58512166 + (TG)n Simple_repeat Simple_repeat 1 60 0 270 0 0 0 chr11 92271387 92271417 -58512136 + (TG)n Simple_repeat Simple_repeat 2 31 0 266 315 81 13 chr11 92271550 92271699 -58511854 - MIR SINE MIR -56 206 48 239 354 31 23 chr11 92271846 92271976 -58511577 + MIR SINE MIR 18 148 -114 366 333 8 0 chr11 92271995 92272115 -58511438 - L2 LINE L2 -1 3312 3192 308 283 22 0 chr11 92272345 92272437 -58511116 + L1MC4 LINE L1 6611 6704 -1338 21 0 0 0 chr11 92272437 92272458 -58511095 + AT_rich Low_complexity Low_complexity 1 21 0 207 211 39 19 chr11 92273557 92273609 -58509944 - L2 LINE L2 -216 3056 3004 261 139 0 0 chr11 92274197 92274240 -58509313 + (GGAA)n Simple_repeat Simple_repeat 4 46 0 214 311 41 57 chr11 92275559 92275681 -58507872 - L3 LINE CR1 -24 1553 1434 228 194 209 45 chr11 92275691 92275758 -58507795 + MIR SINE MIR 114 191 -71 422 335 104 0 chr11 92276911 92277075 -58506478 - MIR SINE MIR -6 256 76 222 37 0 0 chr11 92278296 92278323 -58505230 + (CA)n Simple_repeat Simple_repeat 2 28 0 318 26 0 0 chr11 92278496 92278535 -58505018 + (TA)n Simple_repeat Simple_repeat 2 40 0 232 108 27 0 chr11 92278794 92278831 -58504722 - MLT2B1 LTR ERVL 0 515 478 459 0 0 0 chr11 92278831 92278882 -58504671 + (GA)n Simple_repeat Simple_repeat 2 52 0 1511 248 55 45 chr11 92278936 92279376 -58504177 - MLT2B1 LTR ERVL -76 444 1 311 303 41 41 chr11 92280178 92280300 -58503253 - MIR SINE MIR -12 250 129 330 346 38 30 chr11 92280367 92280500 -58503053 + MIR SINE MIR 17 150 -58 656 310 35 40 chr11 92280689 92280915 -58502638 + MIR SINE MIR 11 235 -27 405 279 61 76 chr11 92281177 92281439 -58502114 + L1ME LINE L1 5534 5791 -330 975 115 0 0 chr11 92282028 92282176 -58501377 + (TC)n Simple_repeat Simple_repeat 2 149 0 221 303 13 0 chr11 92282197 92282273 -58501280 + CT-rich Low_complexity Low_complexity 5 81 0 4030 184 50 49 chr11 92282764 92282864 -58500689 - L1MA9 LINE L1 -35 6277 6179 201 74 0 0 chr11 92282864 92282891 -58500662 + (TG)n Simple_repeat Simple_repeat 2 28 0 4030 184 50 49 chr11 92282891 92283750 -58499803 - L1MA9 LINE L1 -133 6179 5317 22 0 0 0 chr11 92284239 92284261 -58499292 + AT_rich Low_complexity Low_complexity 1 22 0 1314 113 5 0 chr11 92284407 92284602 -58498951 - L1P LINE L1 -3825 2321 2126 6685 62 18 0 chr11 92284602 92285591 -58497962 + L1PA7 LINE L1 5148 6152 -2 26 30 0 0 chr11 92287396 92287429 -58496124 + AT_rich Low_complexity Low_complexity 1 33 0 284 250 34 23 chr11 92287767 92287855 -58495698 - L2 LINE L2 0 3313 3225 428 328 69 5 chr11 92288395 92288599 -58494954 - MER20 DNA MER1_type 0 219 3 4290 50 9 7 chr11 92289810 92290364 -58493189 + L1PA8 LINE L1 5614 6168 -4 22 80 0 0 chr11 92290379 92290429 -58493124 + AT_rich Low_complexity Low_complexity 1 50 0 225 0 0 0 chr11 92291207 92291232 -58492321 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr11 92291324 92291347 -58492206 + AT_rich Low_complexity Low_complexity 1 23 0 1901 219 128 0 chr11 92291613 92292020 -58491533 + MER44D DNA MER2_type 1 459 -246 862 186 0 19 chr11 92292224 92292380 -58491173 - FRAM SINE Alu -23 153 1 460 332 159 5 chr11 92292396 92292604 -58490949 + MIR SINE MIR 12 251 -11 446 376 109 9 chr11 92292821 92293031 -58490522 - L2 LINE L2 -10 3262 3032 402 246 65 22 chr11 92294553 92294691 -58488862 - MIR SINE MIR -102 160 17 2679 190 32 20 chr11 92295001 92295502 -58488051 + MLT2B2 LTR ERVL 1 507 -8 255 325 68 8 chr11 92295802 92295919 -58487634 + MER117 DNA MER1_type 74 197 0 28 0 0 0 chr11 92296511 92296539 -58487014 + AT_rich Low_complexity Low_complexity 1 28 0 463 268 36 7 chr11 92296847 92296985 -58486568 - MER46C DNA MER2_type -135 203 62 322 213 12 0 chr11 92297003 92297083 -58486470 + L1MC4 LINE L1 7938 8018 -24 229 208 0 0 chr11 92297088 92297136 -58486417 - MER46C DNA MER2_type -287 51 4 288 268 79 63 chr11 92298639 92298766 -58484787 - L2 LINE L2 -1 3271 3143 373 242 144 38 chr11 92299247 92299379 -58484174 + L2 LINE L2 3168 3313 0 22 56 0 0 chr11 92299391 92299427 -58484126 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr11 92299472 92299499 -58484054 + AT_rich Low_complexity Low_complexity 1 27 0 1159 326 103 46 chr11 92299991 92300639 -58482914 + MER115 DNA AcHobo 8 692 -1 210 379 0 0 chr11 92301873 92301931 -58481622 + MIR SINE MIR 49 106 -102 29 28 0 0 chr11 92302069 92302105 -58481448 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 92302258 92302279 -58481274 + AT_rich Low_complexity Low_complexity 1 21 0 1513 177 51 39 chr11 92303513 92303847 -58479706 + MER44D DNA MER2_type 2 609 0 430 234 244 0 chr11 92304056 92304261 -58479292 - L1ME3A LINE L1 -220 5950 5696 287 364 44 91 chr11 92305526 92305935 -58477618 + L2 LINE L2 2883 3272 0 234 350 111 0 chr11 92307221 92307338 -58476215 - L2 LINE L2 0 3272 3143 210 268 62 41 chr11 92308541 92308638 -58474915 - MIR SINE MIR -44 218 120 468 387 67 24 chr11 92309404 92310021 -58473532 + L2 LINE L2 2098 2740 -574 231 250 125 16 chr11 92310829 92310957 -58472596 + L1MC/D LINE L1 5331 5472 -2336 276 226 158 82 chr11 92311462 92311608 -58471945 + MIR SINE MIR 50 206 -56 1263 136 191 39 chr11 92311803 92312060 -58471493 - AluJb SINE Alu -2 300 5 361 257 63 53 chr11 92312374 92312581 -58470972 - L1ME3 LINE L1 -1 6169 5961 481 208 26 32 chr11 92312633 92312787 -58470766 - L1MC5 LINE L1 -437 7524 7372 21 0 0 0 chr11 92312979 92313000 -58470553 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr11 92313259 92313292 -58470261 + (CA)n Simple_repeat Simple_repeat 2 34 0 226 320 21 41 chr11 92313473 92313570 -58469983 - L2 LINE L2 -61 3252 3158 257 247 225 22 chr11 92314732 92314821 -58468732 + MIR3 SINE MIR 93 199 -9 1421 166 34 43 chr11 92314993 92315318 -58468235 - MER33 DNA MER1_type 0 324 3 429 248 19 0 chr11 92315764 92315869 -58467684 - MIR SINE MIR -109 153 47 333 333 86 15 chr11 92316234 92316432 -58467121 + MIR SINE MIR 32 243 -19 27 49 0 0 chr11 92317331 92317372 -58466181 + AT_rich Low_complexity Low_complexity 1 41 0 235 349 0 23 chr11 92317400 92317486 -58466067 + L2 LINE L2 3188 3271 -1 951 91 30 0 chr11 92317506 92317638 -58465915 + BC200 scRNA scRNA 1 136 -64 333 0 0 0 chr11 92317638 92317675 -58465878 + (CAA)n Simple_repeat Simple_repeat 2 38 0 30 0 0 0 chr11 92317944 92317974 -58465579 + AT_rich Low_complexity Low_complexity 1 30 0 33 0 0 0 chr11 92318281 92318314 -58465239 + AT_rich Low_complexity Low_complexity 1 33 0 2118 73 0 24 chr11 92319018 92319331 -58464222 - AluY SINE Alu 0 306 1 249 365 92 40 chr11 92319641 92320041 -58463512 - L2 LINE L2 -472 2842 2422 240 119 17 17 chr11 92320597 92320656 -58462897 + L1ME4a LINE L1 6052 6110 -11 530 279 111 10 chr11 92321590 92321798 -58461755 + MIR SINE MIR 34 262 0 330 241 121 95 chr11 92322683 92322799 -58460754 - L2 LINE L2 0 3272 3154 2782 9 0 13 chr11 92322939 92323254 -58460299 + AluYa5 SINE Alu 1 311 0 190 381 16 0 chr11 92323562 92323625 -58459928 + L2 LINE L2 3227 3290 -23 189 309 176 0 chr11 92324133 92324201 -58459352 + L2 LINE L2 3233 3312 -1 211 236 47 132 chr11 92324488 92324594 -58458959 - MIR SINE MIR -49 213 117 415 189 22 11 chr11 92325685 92325775 -58457778 - MIR3 SINE MIR -9 199 109 204 40 0 0 chr11 92326014 92326039 -58457514 + (TC)n Simple_repeat Simple_repeat 1 25 0 234 23 45 23 chr11 92327333 92327377 -58456176 + (TAAAAA)n Simple_repeat Simple_repeat 3 47 0 189 0 0 0 chr11 92327509 92327530 -58456023 + (GAA)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr11 92328218 92328239 -58455314 + AT_rich Low_complexity Low_complexity 1 21 0 291 304 116 27 chr11 92328370 92328542 -58455011 + MIR SINE MIR 1 188 -69 227 318 114 8 chr11 92328591 92328723 -58454830 - MIR SINE MIR -43 219 74 202 333 78 31 chr11 92329200 92329329 -58454224 - MER5A DNA MER1_type -11 178 44 513 333 39 6 chr11 92330756 92330936 -58452617 + MIR3 SINE MIR 12 197 -11 684 271 122 0 chr11 92331092 92331273 -58452280 - MER63A DNA MER1_type -7 203 1 208 274 222 17 chr11 92331274 92331391 -58452162 - MIR SINE MIR -47 215 75 249 317 0 0 chr11 92331433 92331515 -58452038 - MLT1I LTR MaLR -58 351 270 225 377 0 0 chr11 92331794 92331863 -58451690 - MIR SINE MIR -188 74 6 328 322 81 13 chr11 92332341 92332490 -58451063 + MIR SINE MIR 91 249 -13 18801 88 12 2 chr11 92332789 92336252 -58447301 - L1PA7 LINE L1 0 6154 2651 461 288 63 63 chr11 92336853 92337058 -58446495 + MIR SINE MIR 48 252 -10 229 209 0 0 chr11 92337065 92337108 -58446445 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 510 384 46 13 chr11 92337949 92338251 -58445302 - L2 LINE L2 -27 3245 2934 4998 237 71 29 chr11 92338440 92339328 -58444225 - L1ME1 LINE L1 -5 6144 5295 18807 53 3 0 chr11 92339328 92342478 -58441075 - L1PA5 LINE L1 -11 6143 2985 4998 237 71 29 chr11 92342478 92343734 -58439819 - L1ME1 LINE L1 -854 5295 3884 216 0 0 0 chr11 92343734 92343758 -58439795 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4998 237 71 29 chr11 92343758 92344154 -58439399 - L1ME1 LINE L1 -2265 3884 3506 348 64 0 0 chr11 92344155 92344202 -58439351 + (GA)n Simple_repeat Simple_repeat 2 48 0 463 347 44 65 chr11 92344228 92344795 -58438758 - L2 LINE L2 -557 2757 2203 198 103 0 0 chr11 92344885 92344914 -58438639 + (T)n Simple_repeat Simple_repeat 1 29 0 639 242 62 26 chr11 92345236 92345891 -58437662 + L1ME1 LINE L1 5422 6160 -6 4303 247 9 7 chr11 92346785 92347730 -58435823 + L1M2c LINE L1 64 1010 -5779 243 0 0 0 chr11 92347730 92347757 -58435796 + (T)n Simple_repeat Simple_repeat 1 27 0 303 226 128 72 chr11 92398239 92398474 -58385079 - L1ME1 LINE L1 -4869 1250 1003 300 181 32 21 chr11 92400074 92400168 -58383385 + L1MB3 LINE L1 6087 6181 -2 797 316 141 40 chr11 92400252 92400740 -58382813 - L2 LINE L2 0 3313 2782 351 367 11 26 chr11 92403651 92403906 -58379647 + MIR SINE MIR 4 255 -7 1214 201 0 18 chr11 92404386 92404610 -58378943 - AluJb SINE Alu -21 291 72 235 218 18 18 chr11 92404839 92404894 -58378659 + MER5B DNA MER1_type 1 55 -123 636 203 8 8 chr11 92404898 92405031 -58378522 + L1MC1 LINE L1 6001 6133 -200 285 347 0 50 chr11 92406071 92406192 -58377361 + MIR3 SINE MIR 66 180 -28 225 383 97 19 chr11 92406407 92406561 -58376992 - L2 LINE L2 0 3272 3107 2278 105 3 0 chr11 92406561 92406856 -58376697 + AluSp SINE Alu 1 296 -17 373 283 139 44 chr11 92407111 92407291 -58376262 + MIR SINE MIR 13 209 -53 550 251 62 98 chr11 92407393 92407724 -58375829 + MLT1G1 LTR MaLR 6 290 -300 582 311 30 19 chr11 92408454 92408672 -58374881 + MIR SINE MIR 34 256 -6 284 355 35 68 chr11 92411083 92411434 -58372119 - L2 LINE L2 -1354 1960 1620 1078 217 32 0 chr11 92411434 92411651 -58371902 - MER58A DNA MER1_type 0 224 1 284 355 35 68 chr11 92411651 92411665 -58371888 - L2 LINE L2 -1694 1620 1607 284 401 67 27 chr11 92411954 92412283 -58371270 - L2 LINE L2 -2110 1204 863 21 0 0 0 chr11 92413154 92413175 -58370378 + AT_rich Low_complexity Low_complexity 1 21 0 355 145 65 0 chr11 92413516 92413578 -58369975 + L1MC1 LINE L1 6250 6315 -18 405 232 96 24 chr11 92413600 92413725 -58369828 + MER5B DNA MER1_type 45 178 0 1822 162 77 160 chr11 92414295 92414765 -58368788 + Tigger2 DNA MER2_type 1 2715 -3 23 33 0 0 chr11 92415167 92415197 -58368356 + AT_rich Low_complexity Low_complexity 1 30 0 15944 103 5 7 chr11 92415352 92418513 -58365040 - L1PA7 LINE L1 -5 6149 2994 372 346 80 11 chr11 92418735 92418923 -58364630 + MIR SINE MIR 15 215 -47 2418 70 3 19 chr11 92419006 92419322 -58364231 + AluY SINE Alu 1 311 0 1045 277 3 26 chr11 92419506 92419849 -58363704 - MER46C DNA MER2_type -3 335 1 287 322 87 27 chr11 92419923 92420072 -58363481 + MIR3 SINE MIR 30 177 -31 247 256 37 0 chr11 92420095 92420187 -58363366 + L1MB2 LINE L1 6074 6156 -15 3574 180 38 104 chr11 92420302 92420617 -58362936 + L1MD1 LINE L1 5069 5403 -839 1469 224 36 28 chr11 92420617 92420979 -58362574 + MLT1A1 LTR MaLR 1 365 0 3574 180 38 104 chr11 92420979 92421051 -58362502 + L1MD1 LINE L1 5403 5478 -764 2910 0 0 0 chr11 92421051 92421362 -58362191 + AluYa5 SINE Alu 1 311 0 3574 180 38 104 chr11 92421362 92421923 -58361630 + L1MD1 LINE L1 5478 5924 -318 1733 186 3 0 chr11 92421923 92422230 -58361323 + AluJo SINE Alu 5 312 0 3574 180 38 104 chr11 92422230 92422514 -58361039 + L1MD1 LINE L1 5924 6225 -17 300 340 67 94 chr11 92422538 92423108 -58360445 + L2 LINE L2 2716 3272 0 1812 68 21 0 chr11 92423237 92423542 -58360011 - L1P3 LINE L1 -665 5507 5198 3741 74 28 0 chr11 92423542 92424041 -58359512 + L1PA8 LINE L1 5564 6076 -96 1054 199 58 64 chr11 92424041 92424605 -58358948 + LTR22B LTR ERVK 1 488 -4 708 89 0 0 chr11 92424646 92424747 -58358806 + L1PA8 LINE L1 6071 6171 -1 21 0 0 0 chr11 92424747 92424768 -58358785 + AT_rich Low_complexity Low_complexity 1 21 0 267 126 72 0 chr11 92425225 92425294 -58358259 + L1MA7 LINE L1 6225 6290 -1 221 345 113 24 chr11 92425782 92425950 -58357603 + MIR SINE MIR 52 234 -28 373 263 56 73 chr11 92425990 92426169 -58357384 + MIR SINE MIR 28 203 -59 303 233 117 71 chr11 92426861 92427142 -58356411 - L1MEd LINE L1 -4869 1250 1003 1964 210 72 48 chr11 92427312 92427765 -58355788 - L1M4 LINE L1 -1210 4936 4456 2167 120 3 0 chr11 92427765 92428057 -58355496 + AluSq SINE Alu 1 293 -20 1964 210 72 48 chr11 92428057 92428366 -58355187 - L1M4 LINE L1 -1690 4456 4156 * 13491 187 48 18 chr11 92428362 92431224 -58352329 - L1PB1 LINE L1 -2 6865 3774 2122 113 7 0 chr11 92431224 92431524 -58352029 - AluSx SINE Alu 0 312 11 13491 187 48 18 chr11 92431524 92433980 -58349573 - L1PB1 LINE L1 -3093 3774 1392 669 234 12 12 chr11 92433957 92434128 -58349425 - L1PB1 LINE L1 -6647 216 46 * 1579 247 26 14 chr11 92434131 92434641 -58348912 - L1M4 LINE L1 -1968 4178 3655 1275 286 100 67 chr11 92434652 92435552 -58348001 - L2 LINE L2 -688 2626 1697 246 374 81 0 chr11 92436106 92436229 -58347324 - L2 LINE L2 0 3272 3140 6941 47 7 7 chr11 92437428 92438989 -58344564 - L1PA5 LINE L1 0 6154 4590 345 251 147 12 chr11 92439731 92439894 -58343659 - MLT1L LTR MaLR -1 614 430 220 184 0 0 chr11 92439949 92439987 -58343566 + GA-rich Low_complexity Low_complexity 2 39 0 343 301 62 52 chr11 92440034 92440227 -58343326 - MLT1L LTR MaLR -409 206 12 26 0 0 0 chr11 92440710 92440736 -58342817 + AT_rich Low_complexity Low_complexity 1 26 0 395 339 57 83 chr11 92440983 92441319 -58342234 - L2 LINE L2 -1 3271 2945 380 257 104 90 chr11 92441568 92442070 -58341483 - MLT1J LTR MaLR -1 510 2 356 296 25 49 chr11 92442401 92442563 -58340990 + MER5A DNA MER1_type 18 175 -14 500 328 41 33 chr11 92442698 92442942 -58340611 - MIR SINE MIR -10 252 7 1356 241 32 0 chr11 92443258 92443569 -58339984 + MER58B DNA MER1_type 19 339 -2 208 345 9 27 chr11 92443737 92443847 -58339706 + L3 LINE CR1 1078 1185 -392 345 314 63 38 chr11 92443847 92443985 -58339568 - MIR SINE MIR -1 261 113 2299 92 0 13 chr11 92443985 92444301 -58339252 + AluSq SINE Alu 1 312 -1 345 314 63 38 chr11 92444301 92444401 -58339152 - MIR SINE MIR -149 113 17 365 274 118 33 chr11 92444404 92444649 -58338904 + L3 LINE CR1 1212 1477 -100 989 215 13 6 chr11 92446543 92446837 -58336716 + MLT1A1 LTR MaLR 1 365 0 3584 62 13 0 chr11 92447067 92447537 -58336016 - L1PA7 LINE L1 -2 6152 5677 285 306 45 45 chr11 92448405 92448516 -58335037 + MIR SINE MIR 37 147 -61 22 0 0 0 chr11 92448687 92448709 -58334844 + AT_rich Low_complexity Low_complexity 1 22 0 337 285 63 5 chr11 92449015 92449236 -58334317 - L1ME4a LINE L1 -254 5867 5634 302 159 14 0 chr11 92451002 92451071 -58332482 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 21 36 0 0 chr11 92451675 92451703 -58331850 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 92452206 92452227 -58331326 + AT_rich Low_complexity Low_complexity 1 21 0 230 287 58 81 chr11 92452448 92452622 -58330931 + MIR SINE MIR 87 256 -6 22 0 0 0 chr11 92452823 92452845 -58330708 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr11 92453240 92453276 -58330277 + AT_rich Low_complexity Low_complexity 1 36 0 313 303 110 28 chr11 92453292 92453437 -58330116 + MIR3 SINE MIR 42 198 -10 180 294 0 0 chr11 92454580 92454631 -58328922 - L2 LINE L2 -16 3256 3206 258 227 160 0 chr11 92454641 92454716 -58328837 - L2 LINE L2 -14 3299 3213 325 359 28 14 chr11 92454745 92454890 -58328663 - MIR SINE MIR -76 186 40 433 332 36 5 chr11 92454951 92455144 -58328409 + MIR SINE MIR 36 234 -28 242 318 34 23 chr11 92455543 92455631 -58327922 + L2 LINE L2 3184 3272 0 390 42 0 0 chr11 92455675 92455723 -58327830 + (CA)n Simple_repeat Simple_repeat 1 48 0 234 91 0 0 chr11 92456420 92456453 -58327100 + (CAT)n Simple_repeat Simple_repeat 3 35 0 1855 107 0 11 chr11 92456549 92456810 -58326743 + AluSx SINE Alu 39 296 -16 450 313 133 0 chr11 92457050 92457264 -58326289 + MIR SINE MIR 15 262 0 23 0 0 0 chr11 92457628 92457651 -58325902 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr11 92459232 92459257 -58324296 + AT_rich Low_complexity Low_complexity 1 25 0 6875 58 20 0 chr11 92459257 92460412 -58323141 - L1PA5 LINE L1 -3 6151 4987 871 46 0 0 chr11 92460418 92460526 -58323027 + L1PA5 LINE L1 4852 4959 -1187 434 304 148 47 chr11 92461622 92462163 -58321390 + L1ME4a LINE L1 2668 3262 -2884 209 329 141 0 chr11 92462327 92462412 -58321141 + MIR SINE MIR 51 147 -115 232 311 68 0 chr11 92463590 92463693 -58319860 - MIR SINE MIR -48 214 105 23 0 0 0 chr11 92464772 92464795 -58318758 + AT_rich Low_complexity Low_complexity 1 23 0 234 255 124 26 chr11 92465296 92465449 -58318104 + L1ME4a LINE L1 4483 4650 -1496 726 324 93 28 chr11 92465525 92466106 -58317447 + L1ME4a LINE L1 4730 5348 -798 555 309 77 67 chr11 92466129 92466341 -58317212 + L1ME4a LINE L1 5393 5601 -520 2280 83 0 0 chr11 92466341 92466629 -58316924 + AluY SINE Alu 1 288 -23 207 0 0 0 chr11 92466632 92466655 -58316898 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 555 309 77 67 chr11 92466655 92466959 -58316594 + L1ME4a LINE L1 5602 5918 -203 243 0 0 0 chr11 92466959 92466986 -58316567 + (T)n Simple_repeat Simple_repeat 1 27 0 288 0 0 0 chr11 92467252 92467284 -58316269 + (T)n Simple_repeat Simple_repeat 1 32 0 7012 181 118 21 chr11 92467460 92469060 -58314493 - MER52A LTR ERV1 0 1755 1 963 156 12 0 chr11 92469698 92469858 -58313695 + MER57A LTR ERV1 1 162 -241 760 169 59 0 chr11 92469883 92469952 -58313601 - AluSx SINE Alu -108 204 140 186 43 0 0 chr11 92469952 92469975 -58313578 + (TG)n Simple_repeat Simple_repeat 2 24 0 760 169 59 0 chr11 92469975 92470041 -58313512 - AluSx SINE Alu -172 140 61 1115 165 48 0 chr11 92470041 92470247 -58313306 + MER57A LTR ERV1 184 399 -4 399 269 73 51 chr11 92470785 92471019 -58312534 - L1M4 LINE L1 -2944 3202 2964 421 103 0 0 chr11 92471044 92471102 -58312451 - L1PA16 LINE L1 -16 6150 6093 1417 196 3 63 chr11 92471868 92472185 -58311368 - AluSx SINE Alu -14 298 1 189 0 0 0 chr11 92473469 92473490 -58310063 + (A)n Simple_repeat Simple_repeat 1 21 0 189 246 31 62 chr11 92473720 92473785 -58309768 + MIR SINE MIR 64 126 -82 2286 78 10 3 chr11 92474160 92474456 -58309097 - AluY SINE Alu -13 298 1 1528 164 109 32 chr11 92475392 92475740 -58307813 - THE1C LTR MaLR 0 375 1 387 292 92 8 chr11 92476092 92476212 -58307341 + MIR SINE MIR 46 175 -87 * 710 261 140 45 chr11 92476211 92476525 -58307028 + L2 LINE L2 2950 3293 -20 23 0 0 0 chr11 92476576 92476599 -58306954 + AT_rich Low_complexity Low_complexity 1 23 0 182 91 30 0 chr11 92476718 92476751 -58306802 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 299 315 65 0 chr11 92477005 92477097 -58306456 + L2 LINE L2 3195 3292 -21 440 256 101 42 chr11 92477337 92477505 -58306048 + MIR SINE MIR 14 191 -71 218 256 151 12 chr11 92478495 92478581 -58304972 - MIR SINE MIR -59 203 106 637 277 105 13 chr11 92479484 92479722 -58303831 + MIR SINE MIR 2 261 -1 344 316 53 9 chr11 92479846 92479960 -58303593 + L2 LINE L2 3154 3272 0 200 213 21 0 chr11 92480841 92480888 -58302665 + L2 LINE L2 1626 1673 -1641 326 279 27 45 chr11 92480943 92481054 -58302499 - MIR SINE MIR -93 169 61 252 313 70 9 chr11 92481462 92481577 -58301976 + MIR SINE MIR 67 188 -74 778 356 49 49 chr11 92481578 92481970 -58301583 - L2 LINE L2 -561 2753 2359 1156 147 25 15 chr11 92481970 92482174 -58301379 + L1PB3 LINE L1 5949 6154 0 778 356 49 49 chr11 92482174 92482416 -58301137 - L2 LINE L2 -954 2360 2119 458 301 158 11 chr11 92482440 92482623 -58300930 - MIR SINE MIR -8 254 45 200 303 92 0 chr11 92482656 92482732 -58300821 + MIR SINE MIR 180 262 0 322 313 77 18 chr11 92483084 92483356 -58300197 - L1ME4a LINE L1 -218 5903 5616 26 50 0 0 chr11 92483453 92483493 -58300060 + AT_rich Low_complexity Low_complexity 1 40 0 242 357 55 55 chr11 92484089 92484400 -58299153 + L2 LINE L2 2864 3174 -98 232 171 0 0 chr11 92486647 92486688 -58296865 + MIR SINE MIR 111 151 -111 347 231 0 13 chr11 92486944 92487022 -58296531 - MER103 DNA DNA -41 125 49 260 272 43 11 chr11 92487090 92487182 -58296371 + L1ME4a LINE L1 5961 6055 -66 301 256 0 58 chr11 92487616 92487702 -58295851 + MIR SINE MIR 69 149 -113 32 67 0 0 chr11 92487768 92487828 -58295725 + AT_rich Low_complexity Low_complexity 1 60 0 195 226 58 117 chr11 92488708 92488845 -58294708 + MIR SINE MIR 91 219 -43 325 373 34 0 chr11 92489398 92489516 -58294037 + L2 LINE L2 3139 3260 -12 579 126 155 0 chr11 92489533 92489636 -58293917 - MER20 DNA MER1_type -5 214 96 350 41 0 20 chr11 92490200 92490249 -58293304 + (CA)n Simple_repeat Simple_repeat 1 48 0 510 276 102 8 chr11 92491531 92491658 -58291895 - L2 LINE L2 0 3272 3134 411 279 56 56 chr11 92491775 92491954 -58291599 + MIR SINE MIR 72 250 -12 533 298 19 6 chr11 92493150 92493311 -58290242 + MIR3 SINE MIR 37 199 -9 204 273 11 68 chr11 92493398 92493486 -58290067 + MIR SINE MIR 90 172 -90 2131 78 16 60 chr11 92493588 92493907 -58289646 + AluY SINE Alu 1 305 -6 4506 150 19 23 chr11 92494016 92494071 -58289482 + L1PA16 LINE L1 5374 5428 -738 2023 136 3 0 chr11 92494071 92494380 -58289173 + AluSg SINE Alu 1 310 0 4506 150 19 23 chr11 92494380 92495119 -58288434 + L1PA16 LINE L1 5428 6165 -1 236 196 20 0 chr11 92495919 92495970 -58287583 + (TTAGGG)n Simple_repeat Simple_repeat 1 52 0 269 176 0 0 chr11 92496301 92496352 -58287201 + L1ME3A LINE L1 6115 6165 -5 347 300 43 42 chr11 92496372 92496567 -58286986 + L1ME LINE L1 936 1437 -4709 439 237 41 10 chr11 92496646 92496840 -58286713 + L1ME LINE L1 1266 1465 -4931 667 270 35 13 chr11 92496908 92497134 -58286419 + L1ME LINE L1 1586 1816 -4580 3102 273 125 23 chr11 92497149 92499223 -58284330 + L1ME3A LINE L1 2986 5272 -874 1500 266 106 35 chr11 92499259 92499971 -58283582 + L1ME3A LINE L1 5370 6157 -13 1878 154 53 26 chr11 92500021 92500398 -58283155 - L1MB1 LINE L1 0 6168 5782 231 177 65 16 chr11 92500490 92500552 -58283001 + L1ME LINE L1 1793 1857 -4358 294 217 0 0 chr11 92500554 92500623 -58282930 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 2113 172 37 65 chr11 92500629 92501357 -58282196 - L1MB1 LINE L1 -389 5791 5107 22 35 0 0 chr11 92502417 92502446 -58281107 + AT_rich Low_complexity Low_complexity 1 29 0 180 281 135 21 chr11 92502596 92502692 -58280861 - MIR SINE MIR -91 171 65 278 289 13 13 chr11 92503344 92503420 -58280133 + LTR16A LTR ERVL 375 450 0 219 214 0 114 chr11 92503920 92503990 -58279563 - L2 LINE L2 -5 3308 3247 252 345 120 0 chr11 92504446 92504588 -58278965 + L2 LINE L2 2354 2512 -802 255 260 0 0 chr11 92504626 92504676 -58278877 + MER106B DNA MER1_type 2 51 -1008 1692 176 7 0 chr11 92504690 92504968 -58278585 + MLT2C2 LTR ERVL 1 280 -184 237 65 0 0 chr11 92504968 92504999 -58278554 + (TC)n Simple_repeat Simple_repeat 1 31 0 571 170 0 137 chr11 92505040 92505222 -58278331 + MER106B DNA MER1_type 903 1059 0 190 401 81 23 chr11 92505273 92505445 -58278108 + L2 LINE L2 2573 2754 -560 365 288 41 20 chr11 92505459 92505606 -58277947 - MIR SINE MIR -59 149 44 42 0 0 0 chr11 92505624 92505666 -58277887 + AT_rich Low_complexity Low_complexity 1 42 0 5597 229 31 4 chr11 92505689 92507116 -58276437 + L1 LINE L1 2775 4239 -1907 397 125 31 0 chr11 92507115 92507179 -58276374 + L1PB4 LINE L1 5627 5692 -464 * 3592 44 11 0 chr11 92507177 92507650 -58275903 - L1PA4 LINE L1 -2736 3410 2933 15794 42 1 0 chr11 92507650 92510427 -58273126 + L1PA4 LINE L1 3417 6180 0 584 174 0 0 chr11 92510430 92510528 -58273025 + L1PB4 LINE L1 5683 5780 -376 632 149 125 0 chr11 92510529 92510661 -58272892 + L1PB4 LINE L1 6002 6149 -7 202 341 45 11 chr11 92510702 92510790 -58272763 - MIR SINE MIR -171 91 1 996 253 22 4 chr11 92511019 92511244 -58272309 + MIR SINE MIR 3 231 -31 251 250 109 0 chr11 92512272 92512336 -58271217 + L2 LINE L2 3185 3255 -17 417 299 43 53 chr11 92512388 92512575 -58270978 - MER5A DNA MER1_type -3 186 2 515 296 116 23 chr11 92512605 92512821 -58270732 - MIR SINE MIR -1 261 26 318 300 128 33 chr11 92513429 92513609 -58269944 + MIR SINE MIR 63 259 -3 3395 132 17 0 chr11 92513802 92514333 -58269220 + L1PA15 LINE L1 5608 6147 -18 250 266 25 0 chr11 92514869 92514948 -58268605 + L2 LINE L2 3232 3312 -1 617 318 62 38 chr11 92515091 92515639 -58267914 + L1MC4a LINE L1 5340 5785 -377 208 319 0 0 chr11 92515753 92515825 -58267728 + (TA)n Simple_repeat Simple_repeat 1 72 0 208 376 40 24 chr11 92516161 92516286 -58267267 - L2 LINE L2 -2 3270 3144 242 337 179 0 chr11 92516931 92517026 -58266527 - L2 LINE L2 -16 3297 3186 198 216 0 20 chr11 92517032 92517083 -58266470 - L2 LINE L2 0 3313 3264 1390 275 89 18 chr11 92518135 92518714 -58264839 - L2 LINE L2 -1 3312 2690 571 268 84 34 chr11 92518720 92518959 -58264594 - L2 LINE L2 -1232 2082 1832 3072 134 35 63 chr11 92518962 92519581 -58263972 - MER4B LTR ERV1 0 610 9 1403 131 68 4 chr11 92519603 92519839 -58263714 - MER4B-int LTR ERV1 -5 6753 6503 1143 143 0 0 chr11 92519855 92520016 -58263537 - AluY SINE Alu -150 161 1 1432 199 70 25 chr11 92520016 92520332 -58263221 - MER4B-int LTR ERV1 -496 6262 5933 617 171 5 166 chr11 92520607 92520818 -58262735 - MER4B-int LTR ERV1 -4168 3952 3776 924 166 14 37 chr11 92521138 92521355 -58262198 - MER4B-int LTR ERV1 -2659 3939 3728 1185 133 108 0 chr11 92521445 92521648 -58261905 + MER39B LTR ERV1 1 225 -428 1531 209 107 16 chr11 92521893 92522267 -58261286 + MER39B LTR ERV1 217 624 -29 429 153 23 99 chr11 92522346 92522477 -58261076 - MER4B-int LTR ERV1 -2953 3645 3525 * 1181 240 22 35 chr11 92522472 92522785 -58260768 - MER4B-int LTR ERV1 -4189 2142 1834 393 147 0 53 chr11 92522815 92522910 -58260643 - MER4B-int LTR ERV1 -5758 840 751 2392 152 139 29 chr11 92522954 92523480 -58260073 - MER4B-int LTR ERV1 -6014 584 1 3150 147 36 42 chr11 92523483 92524097 -58259456 - MER4B LTR ERV1 0 610 1 1256 297 113 27 chr11 92524097 92524689 -58258864 - L2 LINE L2 -1481 1833 1191 228 337 146 0 chr11 92524843 92524932 -58258621 + L2 LINE L2 3156 3257 -15 27 0 0 0 chr11 92525609 92525636 -58257917 + AT_rich Low_complexity Low_complexity 1 27 0 395 269 245 24 chr11 92525705 92525913 -58257640 - MIR SINE MIR -7 255 2 795 314 93 41 chr11 92527163 92527643 -58255910 - L2 LINE L2 0 3313 2772 2872 3 0 0 chr11 92527643 92527956 -58255597 + AluYb8 SINE Alu 1 313 -5 795 314 93 41 chr11 92527956 92528327 -58255226 - L2 LINE L2 -541 2772 2422 204 381 119 36 chr11 92528435 92528687 -58254866 - L2 LINE L2 -5 3267 2995 1623 207 37 8 chr11 92528825 92529206 -58254347 + MER95 LTR ERV 1 392 -39 3759 139 18 6 chr11 92529211 92529838 -58253715 - L1PA16 LINE L1 0 6166 5533 1348 127 5 0 chr11 92529838 92530051 -58253502 + L1PA16 LINE L1 5319 5532 -634 7198 152 6 17 chr11 92530770 92530868 -58252685 - Tigger1 DNA MER2_type -1 2417 2319 2087 168 69 10 chr11 92530868 92531272 -58252281 - MSTB1 LTR MaLR 0 432 5 7198 152 6 17 chr11 92531272 92532357 -58251196 - Tigger1 DNA MER2_type -99 2319 1247 1250 172 21 13 chr11 92532357 92532674 -58250879 - Ricksha DNA DNA -9 2845 2580 968 98 0 69 chr11 92532679 92532730 -58250823 - L1MA2 LINE L1 -3 6301 6248 2201 114 0 3 chr11 92532730 92533027 -58250526 - AluSc SINE Alu -13 296 1 968 98 0 69 chr11 92533027 92533148 -58250405 - L1MA2 LINE L1 -56 6248 6141 315 200 0 0 chr11 92533153 92533213 -58250340 + Tigger2 DNA MER2_type 2659 2718 0 1125 202 4 42 chr11 92533214 92533452 -58250101 - Ricksha DNA DNA -1830 1416 1188 2190 139 47 31 chr11 92533453 92533554 -58249999 - Ricksha DNA DNA -2745 501 403 2443 127 6 3 chr11 92533554 92533917 -58249636 - THE1B LTR MaLR 0 364 1 2190 139 47 31 chr11 92533917 92534240 -58249313 - Ricksha DNA DNA -2843 403 70 7240 137 40 25 chr11 92534250 92535465 -58248088 - Tigger1 DNA MER2_type -1176 1242 10 243 333 83 8 chr11 92535479 92535599 -58247954 + L2 LINE L2 1834 1962 -1352 371 321 40 43 chr11 92535697 92535999 -58247554 + L2 LINE L2 2290 2590 -724 4929 80 133 0 chr11 92535999 92536728 -58246825 + LTR12 LTR ERV1 1 826 0 4362 131 36 16 chr11 92536752 92537454 -58246099 + HERV9 LTR ERV1 1 716 -7683 291 95 24 0 chr11 92537447 92537489 -58246064 - LTR12 LTR ERV1 -659 55 13 * 298 273 0 0 chr11 92537489 92537555 -58245998 + L2 LINE L2 3206 3271 -1 275 269 149 30 chr11 92538194 92538328 -58245225 - MIR SINE MIR -105 157 8 182 37 37 0 chr11 92540354 92540381 -58243172 + (TAA)n Simple_repeat Simple_repeat 3 30 0 591 311 114 4 chr11 92540381 92540609 -58242944 - MIR SINE MIR -6 256 4 297 299 21 21 chr11 92542305 92542402 -58241151 + MIR SINE MIR 58 154 -108 5441 201 52 10 chr11 92542650 92544827 -58238726 + L1MB8 LINE L1 3911 6175 -3 225 0 0 0 chr11 92544959 92544984 -58238569 + (A)n Simple_repeat Simple_repeat 1 25 0 317 262 282 7 chr11 92546689 92546838 -58236715 - MIR SINE MIR -8 254 65 243 0 0 0 chr11 92548011 92548038 -58235515 + (A)n Simple_repeat Simple_repeat 1 27 0 189 0 0 0 chr11 92548092 92548113 -58235440 + (CA)n Simple_repeat Simple_repeat 2 22 0 192 360 0 0 chr11 92549800 92549850 -58233703 + L2 LINE L2 3185 3234 -38 1330 158 0 40 chr11 92550287 92550534 -58233019 + AluSg/x SINE Alu 74 310 0 22 35 0 0 chr11 92551831 92551860 -58231693 + AT_rich Low_complexity Low_complexity 1 29 0 260 287 148 0 chr11 92552265 92552366 -58231187 - MIR3 SINE MIR -3 205 90 497 289 95 13 chr11 92552676 92552900 -58230653 - MIR SINE MIR -13 249 19 431 324 29 15 chr11 92553690 92553826 -58229727 + MIR3 SINE MIR 14 151 -57 264 241 13 101 chr11 92555417 92555496 -58228057 - L2 LINE L2 0 3272 3201 351 269 19 19 chr11 92556464 92556620 -58226933 + (TA)n Simple_repeat Simple_repeat 2 157 0 395 232 0 61 chr11 92557361 92557460 -58226093 + MIR SINE MIR 33 125 -137 249 276 0 0 chr11 92557690 92557766 -58225787 + A-rich Low_complexity Low_complexity 1 76 0 185 262 0 49 chr11 92558731 92558785 -58224768 - MIR SINE MIR -46 216 166 547 294 52 16 chr11 92558785 92558979 -58224574 + MIR SINE MIR 1 201 -61 356 295 50 29 chr11 92559070 92559209 -58224344 + MIR SINE MIR 73 214 -48 21 36 0 0 chr11 92559368 92559396 -58224157 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 92560594 92560617 -58222936 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr11 92560665 92560696 -58222857 + AT_rich Low_complexity Low_complexity 1 31 0 211 167 13 51 chr11 92561418 92561496 -58222057 + (TTATA)n Simple_repeat Simple_repeat 1 75 0 312 342 0 0 chr11 92561915 92562029 -58221524 + (TA)n Simple_repeat Simple_repeat 1 114 0 212 83 0 28 chr11 92562036 92562072 -58221481 + (TG)n Simple_repeat Simple_repeat 2 36 0 328 329 82 24 chr11 92562661 92562831 -58220722 - MER5A DNA MER1_type 0 189 10 182 233 17 0 chr11 92562893 92562953 -58220600 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 268 270 11 0 chr11 92562954 92563043 -58220510 - L1MC4 LINE L1 -1339 6703 6614 230 0 33 0 chr11 92563043 92563073 -58220480 + (TA)n Simple_repeat Simple_repeat 1 31 0 2440 71 0 0 chr11 92563073 92563370 -58220183 - AluY SINE Alu -14 297 1 245 329 101 39 chr11 92563378 92563685 -58219868 - L2 LINE L2 -605 2709 2384 185 374 0 61 chr11 92564259 92564358 -58219195 + L2 LINE L2 2936 3028 -285 334 271 46 79 chr11 92564501 92564712 -58218841 - MIR SINE MIR -25 237 30 2518 51 0 0 chr11 92564928 92565224 -58218329 - AluY SINE Alu -15 296 1 228 354 0 13 chr11 92565724 92565803 -58217750 + MIR SINE MIR 11 88 -174 279 0 0 0 chr11 92565901 92565932 -58217621 + (CA)n Simple_repeat Simple_repeat 2 32 0 395 300 200 0 chr11 92566869 92567019 -58216534 - MIR SINE MIR -20 242 63 230 294 186 49 chr11 92567308 92567716 -58215837 + L2 LINE L2 2849 3312 -1 23 54 0 0 chr11 92567950 92567987 -58215566 + AT_rich Low_complexity Low_complexity 1 37 0 457 310 125 0 chr11 92568986 92569186 -58214367 - MIR SINE MIR -26 236 12 545 31 0 0 chr11 92569565 92569629 -58213924 - L1PA7 LINE L1 -701 5471 5408 5048 77 22 0 chr11 92569629 92570301 -58213252 + L1PA7 LINE L1 5462 6150 -4 203 203 16 0 chr11 92574087 92574151 -58209402 + GA-rich Low_complexity Low_complexity 1 65 0 2452 4 0 0 chr11 92574372 92574639 -58208914 + AluYa5 SINE Alu 39 305 -6 22 0 0 0 chr11 92574668 92574690 -58208863 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr11 92574927 92574958 -58208595 + AT_rich Low_complexity Low_complexity 1 31 0 184 275 0 0 chr11 92575729 92575769 -58207784 - L2 LINE L2 -2 3311 3272 199 207 281 12 chr11 92575857 92575939 -58207614 - L2 LINE L2 -2 3311 3208 242 293 32 41 chr11 92575995 92576118 -58207435 - L2 LINE L2 -188 3084 2963 319 257 186 0 chr11 92576865 92576978 -58206575 + L2 LINE L2 3180 3313 0 247 224 15 0 chr11 92577060 92577127 -58206426 + (TA)n Simple_repeat Simple_repeat 2 69 0 5879 101 10 1 chr11 92577460 92578770 -58204783 - L1P4 LINE L1 -370 5798 4479 262 295 29 38 chr11 92579125 92579230 -58204323 + L3 LINE CR1 1384 1487 -90 1365 101 0 0 chr11 92579362 92579551 -58204002 - AluYa5 SINE Alu -3 308 120 3262 243 46 2 chr11 92579652 92580760 -58202793 + L1 LINE L1 2357 3593 -2553 1274 170 9 0 chr11 92580865 92581094 -58202459 - L1M2 LINE L1 -605 5707 5477 8975 171 20 7 chr11 92581200 92583885 -58199668 - L1MA3 LINE L1 -10 6295 3575 219 273 61 0 chr11 92583985 92584051 -58199502 - MIR SINE MIR -111 151 82 838 275 74 42 chr11 92585165 92585188 -58198365 + L2 LINE L2 2848 2869 -444 2445 103 11 0 chr11 92585188 92585539 -58198014 + THE1A LTR MaLR 1 355 0 838 275 74 42 chr11 92585539 92585918 -58197635 + L2 LINE L2 2869 3263 -50 186 43 0 0 chr11 92585942 92585965 -58197588 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 963 233 20 38 chr11 92586149 92586441 -58197112 - L1MA9 LINE L1 -36 6276 5990 1002 124 0 18 chr11 92586542 92586711 -58196842 - AluY SINE Alu -145 166 1 4396 190 35 19 chr11 92586747 92587091 -58196462 - L1MB2 LINE L1 -22 7568 7231 468 0 0 0 chr11 92587091 92587143 -58196410 + (TG)n Simple_repeat Simple_repeat 2 53 0 4396 190 35 19 chr11 92587143 92588257 -58195296 - L1MB2 LINE L1 -359 7231 6093 2079 100 7 0 chr11 92588636 92588907 -58194646 - AluSx SINE Alu -16 296 24 323 220 33 99 chr11 92588991 92589122 -58194431 - MIR SINE MIR -48 160 33 302 322 58 49 chr11 92589446 92589651 -58193902 - MIR SINE MIR -55 207 1 9793 189 24 15 chr11 92590539 92592317 -58191236 - L1MB2 LINE L1 -4025 3540 1779 357 24 0 0 chr11 92592317 92592359 -58191194 + (TC)n Simple_repeat Simple_repeat 1 42 0 9793 189 24 15 chr11 92592359 92593404 -58190149 - L1MB2 LINE L1 -5786 1779 8 1181 165 32 0 chr11 92593411 92593660 -58189893 - L1M3 LINE L1 -703 5480 5225 227 302 114 0 chr11 92593692 92593821 -58189732 - MIR SINE MIR -56 206 58 213 39 0 0 chr11 92593832 92593858 -58189695 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 1785 120 11 0 chr11 92593858 92594124 -58189429 - L1PA8 LINE L1 -25 6147 5879 234 0 0 0 chr11 92594542 92594568 -58188985 + (A)n Simple_repeat Simple_repeat 1 26 0 1180 239 109 21 chr11 92595453 92595830 -58187723 + LTR40b LTR ERVL 51 460 -2 658 241 109 65 chr11 92595839 92595995 -58187558 + HERVL40 LTR ERVL 17 165 -5365 2041 128 38 0 chr11 92595995 92596284 -58187269 + AluSx SINE Alu 1 300 -12 658 241 109 65 chr11 92596284 92596421 -58187132 + HERVL40 LTR ERVL 165 323 -5207 224 177 32 0 chr11 92596644 92596706 -58186847 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 267 189 0 19 chr11 92596901 92596954 -58186599 - HERVL40 LTR ERVL -1981 3549 3498 1065 227 70 4 chr11 92596957 92597199 -58186354 + HERVL40 LTR ERVL 3292 3549 -1981 2911 91 15 7 chr11 92597296 92597701 -58185852 + MLT2A1 LTR ERVL 1 408 -36 38470 78 17 3 chr11 92597701 92602776 -58180777 + HERVL-A1-A1 LTR ERVL 26 5248 -406 217 26 53 26 chr11 92602776 92602814 -58180739 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 38470 78 17 3 chr11 92602814 92603227 -58180326 + HERVL-A1-A1 LTR ERVL 5248 5654 0 2977 83 57 5 chr11 92603227 92603614 -58179939 + MLT2A1 LTR ERVL 1 413 -31 309 26 0 0 chr11 92603614 92603652 -58179901 + (CA)n Simple_repeat Simple_repeat 2 39 0 2977 83 57 5 chr11 92603652 92603686 -58179867 + MLT2A1 LTR ERVL 413 444 0 237 269 106 43 chr11 92603859 92604000 -58179553 - L2 LINE L2 -191 3081 2932 239 326 76 14 chr11 92604016 92604160 -58179393 + MIR SINE MIR 20 172 -90 1395 229 92 67 chr11 92604209 92604777 -58178776 - MER34C LTR ERV1 0 585 4 252 273 47 93 chr11 92605076 92605226 -58178327 - MIR SINE MIR 0 262 120 657 235 96 0 chr11 92605309 92605475 -58178078 + MER5A DNA MER1_type 8 189 0 381 238 0 0 chr11 92605610 92605694 -58177859 - Charlie8 DNA MER1_type -2252 165 82 1348 210 165 26 chr11 92605707 92606131 -58177422 + LTR54B LTR ERV1 14 496 -2 360 175 0 0 chr11 92606402 92606459 -58177094 + MER5A DNA MER1_type 8 64 -125 24 0 0 0 chr11 92607413 92607437 -58176116 + AT_rich Low_complexity Low_complexity 1 24 0 1483 202 86 38 chr11 92607804 92608268 -58175285 + MER39 LTR ERV1 5 707 0 632 200 33 50 chr11 92609269 92609373 -58174180 + L1MC4 LINE L1 5795 5899 -1909 1211 208 93 25 chr11 92609373 92609695 -58173858 + MER2 DNA MER2_type 1 344 0 632 200 33 50 chr11 92609695 92609724 -58173829 + L1MC4 LINE L1 5899 5927 -1881 1535 207 112 71 chr11 92609724 92610343 -58173210 - LTR48B LTR ERV1 0 644 1 632 200 33 50 chr11 92610343 92610388 -58173165 + L1MC4 LINE L1 5927 5971 -1837 1124 216 85 46 chr11 92610390 92611015 -58172538 - MER39 LTR ERV1 -2 628 1 1237 142 32 14 chr11 92611046 92611265 -58172288 - MER83 LTR ERV1 0 448 226 436 106 0 0 chr11 92611261 92611327 -58172226 - MER83 LTR ERV1 -382 66 1 * 484 209 14 7 chr11 92611337 92611476 -58172077 + L1MC4 LINE L1 7071 7210 -832 23055 180 15 35 chr11 92611519 92618100 -58165453 + L1PA11 LINE L1 1 6488 -1 2284 235 50 19 chr11 92618101 92618841 -58164712 + L1MC4 LINE L1 7278 8040 -2 373 304 52 32 chr11 92619105 92619512 -58164041 + L1MEd LINE L1 915 1369 -4884 21 0 0 0 chr11 92619789 92619810 -58163743 + AT_rich Low_complexity Low_complexity 1 21 0 677 265 52 19 chr11 92620235 92620446 -58163107 - MIR SINE MIR -43 219 2 374 263 115 26 chr11 92620457 92620727 -58162826 + L1ME4a LINE L1 5782 6075 -46 369 284 41 53 chr11 92621088 92621257 -58162296 - MIR3 SINE MIR -4 204 38 342 310 26 18 chr11 92621259 92621372 -58162181 - MIR SINE MIR -129 133 20 605 182 47 18 chr11 92621617 92621787 -58161766 - L1MA2 LINE L1 -15 6289 6115 425 311 112 12 chr11 92622552 92622713 -58160840 - MIR SINE MIR -44 218 42 185 247 68 41 chr11 92623832 92623905 -58159648 - MIR SINE MIR -108 154 80 355 298 99 13 chr11 92624303 92624454 -58159099 - MIR SINE MIR -18 244 81 496 307 56 43 chr11 92626194 92626425 -58157128 - MIR SINE MIR -16 246 13 1153 149 116 47 chr11 92626546 92626847 -58156706 - MER33 DNA MER1_type -2 322 1 426 287 5 27 chr11 92627913 92628101 -58155452 + L1M4 LINE L1 55 238 -6304 1764 260 89 67 chr11 92628291 92629734 -58153819 + L1M4 LINE L1 517 1973 -4673 1247 260 59 13 chr11 92629717 92630090 -58153463 + L1MD2 LINE L1 5709 6098 -261 * 905 210 13 0 chr11 92630209 92630366 -58153187 - FRAM SINE Alu -6 160 2 389 240 94 0 chr11 92630419 92630515 -58153038 + ERVL LTR ERVL 5166 5270 -494 1437 231 40 14 chr11 92630736 92631164 -58152389 + L1P LINE L1 2956 3394 -2752 * 2324 118 11 25 chr11 92631161 92631527 -58152026 + L1P4 LINE L1 5387 5747 -419 396 59 0 0 chr11 92631562 92631613 -58151940 + (CA)n Simple_repeat Simple_repeat 1 51 0 377 338 76 0 chr11 92632205 92632362 -58151191 - MIR SINE MIR -16 246 78 207 350 158 9 chr11 92632362 92632502 -58151051 - MIR SINE MIR -80 182 23 524 274 13 51 chr11 92632502 92632659 -58150894 + MIR SINE MIR 7 157 -105 3654 177 91 7 chr11 92633369 92634264 -58149289 - L1MB7 LINE L1 -44 6140 5171 1259 294 142 34 chr11 92634319 92634884 -58148669 - L1M2c LINE L1 -6156 633 8 207 116 0 47 chr11 92635205 92635248 -58148305 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 372 194 28 0 chr11 92635250 92635322 -58148231 - L2 LINE L2 0 3313 3240 2567 36 0 10 chr11 92635931 92636233 -58147320 - AluY SINE Alu -12 299 1 542 307 28 38 chr11 92636833 92637045 -58146508 + MER63A DNA MER1_type 1 210 0 254 297 172 8 chr11 92638234 92638362 -58145191 + MIR SINE MIR 47 195 -67 327 336 57 16 chr11 92638566 92638688 -58144865 + MIR3 SINE MIR 1 127 -81 201 339 107 16 chr11 92639268 92639389 -58144164 + L2 LINE L2 2907 3038 -275 1939 242 78 14 chr11 92639394 92639948 -58143605 + L1ME2 LINE L1 5565 6153 -11 187 189 0 0 chr11 92640008 92640045 -58143508 + MER5A DNA MER1_type 129 165 -24 266 341 49 16 chr11 92640235 92640358 -58143195 + MER5B DNA MER1_type 4 130 -48 764 347 31 31 chr11 92640382 92640832 -58142721 + L1MA4 LINE L1 1534 1983 -5503 1447 348 134 5 chr11 92641934 92642710 -58140843 + L1MA4 LINE L1 1900 2775 -4790 11930 164 22 68 chr11 92642712 92643371 -58140182 + L1MA4 LINE L1 3851 4539 -3026 50 18 0 0 chr11 92643371 92643428 -58140125 + AT_rich Low_complexity Low_complexity 1 57 0 11930 164 22 68 chr11 92643428 92643479 -58140074 + L1MA4 LINE L1 4539 4591 -2974 313 78 20 0 chr11 92643479 92643530 -58140023 + MADE1 DNA Mariner 29 80 0 11930 164 22 68 chr11 92643530 92645444 -58138109 + L1MA4 LINE L1 4591 6456 -1109 249 122 103 10 chr11 92645445 92645503 -58138050 + L1MA4 LINE L1 7156 7210 -500 201 39 0 0 chr11 92645511 92645537 -58138016 + (TA)n Simple_repeat Simple_repeat 1 26 0 3051 142 14 16 chr11 92645537 92646046 -58137507 + L1MA4 LINE L1 7201 7708 -11 2559 115 80 15 chr11 92646312 92646712 -58136841 + MSTA LTR MaLR 3 428 0 378 297 14 29 chr11 92646712 92646840 -58136713 + MIR SINE MIR 13 140 -122 1094 138 0 0 chr11 92647052 92647211 -58136342 + AluSq SINE Alu 138 296 -17 229 206 0 0 chr11 92647923 92647957 -58135596 + L2 LINE L2 3204 3237 -35 5307 237 56 19 chr11 92648344 92649580 -58133973 - L1M4 LINE L1 -1099 5047 3746 1920 146 3 10 chr11 92649580 92649882 -58133671 - AluSq SINE Alu -13 300 1 5307 237 56 19 chr11 92649882 92650134 -58133419 - L1M4 LINE L1 -2400 3746 3505 202 314 34 68 chr11 92650881 92650999 -58132554 + MIR SINE MIR 47 160 -102 994 179 36 0 chr11 92651007 92651175 -58132378 + FRAM SINE Alu 1 169 -7 264 303 34 0 chr11 92651303 92651392 -58132161 + MER117 DNA MER1_type 67 158 -39 245 295 31 78 chr11 92651614 92651743 -58131810 + L2 LINE L2 3189 3311 -2 445 191 18 18 chr11 92651888 92651998 -58131555 - L1MA5A LINE L1 -2 6295 6186 433 253 65 45 chr11 92652028 92652182 -58131371 - MIR SINE MIR -65 197 41 447 248 116 23 chr11 92652263 92652392 -58131161 + MIR3 SINE MIR 4 144 -64 363 300 36 0 chr11 92653866 92653976 -58129577 + MIR SINE MIR 41 154 -108 225 301 14 14 chr11 92654322 92654395 -58129158 - MIR SINE MIR -111 97 25 24 67 0 0 chr11 92654595 92654640 -58128913 + AT_rich Low_complexity Low_complexity 1 45 0 2517 83 0 3 chr11 92656349 92656661 -58126892 + AluSx SINE Alu 1 311 -1 24 0 0 0 chr11 92656707 92656731 -58126822 + AT_rich Low_complexity Low_complexity 1 24 0 411 255 124 0 chr11 92656763 92656908 -58126645 + MIR SINE MIR 66 228 -34 273 276 71 10 chr11 92657171 92657269 -58126284 + L2 LINE L2 2955 3058 -214 484 254 49 75 chr11 92657358 92657721 -58125832 + MLT1I LTR MaLR 81 450 0 204 191 48 0 chr11 92657793 92657835 -58125718 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 1033 272 112 59 chr11 92658409 92658927 -58124626 - L2 LINE L2 -2 3311 2763 272 207 26 138 chr11 92658996 92659055 -58124498 - MIR SINE MIR -52 210 169 1876 166 0 0 chr11 92659055 92659339 -58124214 - AluSx SINE Alu -28 284 1 272 207 26 138 chr11 92659339 92659395 -58124158 - MIR SINE MIR -93 169 108 485 301 143 37 chr11 92659769 92660343 -58123210 + L2 LINE L2 2636 3272 0 208 336 88 16 chr11 92660441 92660566 -58122987 + MIR SINE MIR 49 145 -63 299 298 101 28 chr11 92661500 92661678 -58121875 - L3 LINE CR1 -259 1318 1128 371 302 153 11 chr11 92661685 92661874 -58121679 - MIR SINE MIR -31 231 16 414 259 0 0 chr11 92661908 92661989 -58121564 - MIR3 SINE MIR -116 92 12 2175 104 0 0 chr11 92662626 92662914 -58120639 - AluSg SINE Alu -21 289 2 193 156 0 0 chr11 92664200 92664232 -58119321 - L2 LINE L2 -210 3062 3031 302 326 76 23 chr11 92664322 92664454 -58119099 + MER5A DNA MER1_type 30 168 -21 219 382 0 0 chr11 92664574 92664650 -58118903 - MIR SINE MIR -74 134 59 521 245 0 112 chr11 92665042 92665230 -58118323 - MER5B DNA MER1_type -4 174 8 343 261 87 26 chr11 92665272 92665387 -58118166 - MER96 DNA MER1_type? -5 170 49 499 252 118 0 chr11 92665388 92665523 -58118030 + MER96 DNA MER1_type? 25 175 0 353 278 118 14 chr11 92665766 92665910 -58117643 + MIR SINE MIR 90 248 -14 181 133 156 67 chr11 92666353 92666398 -58117155 + L2 LINE L2 3223 3271 -1 2777 172 74 2 chr11 92666518 92666989 -58116564 + MLT1D LTR MaLR 1 505 0 1054 123 0 7 chr11 92667037 92667192 -58116361 - LTR32 LTR ERVL -1 470 317 1992 110 70 37 chr11 92667227 92667554 -58115999 - LTR32 LTR ERVL -119 352 15 262 313 100 48 chr11 92667925 92668155 -58115398 + L2 LINE L2 2811 3052 -220 427 252 211 20 chr11 92668251 92668398 -58115155 + MIR SINE MIR 13 187 -75 289 325 93 21 chr11 92669041 92669195 -58114358 + MIR3 SINE MIR 2 163 -63 30 27 0 0 chr11 92669259 92669296 -58114257 + AT_rich Low_complexity Low_complexity 1 37 0 1637 170 15 4 chr11 92669296 92669561 -58113992 - AluJb SINE Alu -24 288 21 342 246 85 54 chr11 92670461 92670591 -58112962 + MIR3 SINE MIR 67 200 -8 488 298 116 56 chr11 92670720 92671039 -58112514 + L2 LINE L2 2896 3233 -39 429 320 46 17 chr11 92671633 92671808 -58111745 - MIR SINE MIR -55 207 28 407 217 116 8 chr11 92672245 92672374 -58111179 + MIR3 SINE MIR 43 185 -23 217 225 0 0 chr11 92672592 92672632 -58110921 + polypyrimidine Low_complexity Low_complexity 4 43 0 384 274 40 24 chr11 92672823 92672858 -58110695 - MIR3 SINE MIR -23 185 152 1848 154 7 0 chr11 92672858 92673159 -58110394 - AluSx SINE Alu 0 303 1 384 274 40 24 chr11 92673159 92673246 -58110307 - MIR3 SINE MIR -56 152 60 2269 145 42 30 chr11 92673285 92673641 -58109912 + MSTB1 LTR MaLR 1 364 -68 4612 64 14 2 chr11 92673641 92674204 -58109349 - L1PA7 LINE L1 -6 6148 5579 2269 145 42 30 chr11 92674204 92674274 -58109279 + MSTB1 LTR MaLR 364 432 0 2286 103 6 0 chr11 92675191 92675502 -58108051 - AluSq SINE Alu 0 313 1 1735 172 0 28 chr11 92676076 92676395 -58107158 + AluJb SINE Alu 1 310 -2 310 325 24 8 chr11 92676736 92676862 -58106691 - MIR SINE MIR -38 224 97 525 319 5 37 chr11 92677261 92677449 -58106104 + MIR3 SINE MIR 19 200 -8 4351 178 79 19 chr11 92677648 92678445 -58105108 + MER21B LTR ERV1 1 845 -18 2990 90 0 11 chr11 92678445 92678824 -58104729 - THE1C LTR MaLR 0 375 1 11293 111 7 40 chr11 92678824 92680458 -58103095 - THE1C-int LTR MaLR 0 1580 1 3018 93 0 8 chr11 92680458 92680834 -58102719 - THE1C LTR MaLR 0 375 3 624 222 148 32 chr11 92680978 92681167 -58102386 - MIR SINE MIR -31 231 21 2618 43 0 7 chr11 92682871 92683176 -58100377 + AluY SINE Alu 1 303 -8 740 276 120 22 chr11 92683218 92683634 -58099919 + L1ME4a LINE L1 5480 5936 -185 1011 159 25 12 chr11 92684257 92684420 -58099133 - AluJo SINE Alu -19 293 129 27 73 0 0 chr11 92684453 92684508 -58099045 + AT_rich Low_complexity Low_complexity 1 55 0 259 295 181 0 chr11 92684567 92684672 -58098881 - L2 LINE L2 0 3272 3149 481 291 90 51 chr11 92684859 92685093 -58098460 - MIR SINE MIR -6 256 14 194 371 57 0 chr11 92685165 92685235 -58098318 - L2 LINE L2 -92 3180 3107 254 200 186 0 chr11 92685358 92685428 -58098125 - MLT1K LTR MaLR -2 586 504 315 319 181 40 chr11 92685565 92686013 -58097540 - L2 LINE L2 -2108 1206 696 634 259 199 0 chr11 92686093 92686186 -58097367 - MIR SINE MIR -1 261 188 267 31 0 0 chr11 92686186 92686218 -58097335 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 634 259 199 0 chr11 92686218 92686340 -58097213 - MIR SINE MIR -74 188 3 232 295 89 27 chr11 92686395 92686507 -58097046 - L2 LINE L2 -2834 480 362 361 270 105 20 chr11 92687099 92687251 -58096302 + MLT1K LTR MaLR 144 308 -280 1903 158 0 10 chr11 92687588 92687880 -58095673 - AluJo SINE Alu -23 289 1 21 36 0 0 chr11 92687939 92687967 -58095586 + AT_rich Low_complexity Low_complexity 1 28 0 1893 108 0 8 chr11 92688358 92688618 -58094935 + AluSg SINE Alu 39 296 -14 22 35 0 0 chr11 92688940 92688969 -58094584 + AT_rich Low_complexity Low_complexity 1 29 0 319 301 48 63 chr11 92690313 92690519 -58093034 + L3 LINE CR1 1341 1543 -34 475 204 238 17 chr11 92690557 92690729 -58092824 + MIR SINE MIR 53 262 0 687 300 65 9 chr11 92691425 92691655 -58091898 + MIR SINE MIR 20 262 0 838 152 0 0 chr11 92692070 92692195 -58091358 - AluJo SINE Alu -181 131 7 1971 140 3 7 chr11 92693406 92693699 -58089854 - AluJb SINE Alu -20 292 1 292 365 65 77 chr11 92693859 92694212 -58089341 - L2 LINE L2 -2 3270 2922 1047 181 10 0 chr11 92694985 92695190 -58088363 + L1MB2 LINE L1 5949 6155 -16 2028 115 100 9 chr11 92695999 92696330 -58087223 - MER46B DNA MER2_type 0 236 1 183 250 114 0 chr11 92696490 92696534 -58087019 + MER5A DNA MER1_type 140 188 -1 564 211 94 50 chr11 92696937 92697052 -58086501 + MER5A DNA MER1_type 1 128 -61 1627 184 31 14 chr11 92697052 92697345 -58086208 - AluJb SINE Alu -14 298 1 564 211 94 50 chr11 92697345 92697409 -58086144 + MER5A DNA MER1_type 128 188 -1 810 256 92 43 chr11 92697876 92698563 -58084990 + L1MEc LINE L1 1072 1771 -4444 976 280 109 16 chr11 92698582 92699502 -58084051 + L1MEc LINE L1 1875 2841 -3374 597 145 65 16 chr11 92700275 92700399 -58083154 - L1MC1 LINE L1 0 6333 6204 25 0 0 0 chr11 92700407 92700432 -58083121 + AT_rich Low_complexity Low_complexity 1 25 0 303 269 100 31 chr11 92701015 92701145 -58082408 - MIR SINE MIR -2 260 122 306 322 179 32 chr11 92701171 92701661 -58081892 - L2 LINE L2 -56 3257 2676 2166 108 3 3 chr11 92701680 92702003 -58081550 - AluSq SINE Alu 0 313 1 353 328 46 8 chr11 92702004 92702135 -58081418 + MIR SINE MIR 79 214 -48 1895 101 30 92 chr11 92702686 92702837 -58080716 + AluSp SINE Alu 1 123 -190 234 0 0 0 chr11 92702837 92702863 -58080690 + (CA)n Simple_repeat Simple_repeat 1 26 0 1895 101 30 92 chr11 92702863 92703039 -58080514 + AluSp SINE Alu 123 308 -5 404 276 9 9 chr11 92703590 92703695 -58079858 + MIR3 SINE MIR 100 204 -4 2620 33 23 0 chr11 92703698 92704000 -58079553 - AluY SINE Alu -2 309 1 2353 105 0 0 chr11 92704541 92704845 -58078708 - AluSx SINE Alu -8 304 1 211 308 0 22 chr11 92705325 92705416 -58078137 + (TA)n Simple_repeat Simple_repeat 1 89 0 22 0 0 0 chr11 92706395 92706417 -58077136 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr11 92706617 92706653 -58076900 + AT_rich Low_complexity Low_complexity 1 36 0 282 56 0 0 chr11 92707552 92707588 -58075965 + (CA)n Simple_repeat Simple_repeat 2 37 0 1955 157 0 7 chr11 92707588 92707881 -58075672 - AluSx SINE Alu -21 291 1 489 326 163 5 chr11 92708189 92708404 -58075149 - MIR SINE MIR 0 262 14 644 276 84 22 chr11 92708412 92708637 -58074916 + MIR SINE MIR 20 258 -4 688 220 176 22 chr11 92708661 92708888 -58074665 + MIR SINE MIR 1 262 0 29 47 0 0 chr11 92709901 92709944 -58073609 + AT_rich Low_complexity Low_complexity 1 43 0 223 234 78 16 chr11 92710198 92710262 -58073291 + MIR SINE MIR 185 252 -10 375 23 0 0 chr11 92711555 92711599 -58071954 + (CA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chr11 92712111 92712133 -58071420 + AT_rich Low_complexity Low_complexity 1 22 0 436 289 35 61 chr11 92712645 92712842 -58070711 + MIR SINE MIR 1 146 -62 573 255 163 16 chr11 92714411 92714595 -58068958 + L3 LINE CR1 1364 1574 -3 594 220 52 23 chr11 92715235 92715408 -58068145 + MIR SINE MIR 81 258 -4 362 205 77 0 chr11 92716479 92716557 -58066996 + L2 LINE L2 3230 3313 0 2382 66 16 3 chr11 92717037 92717340 -58066213 - AluY SINE Alu -4 307 1 42 77 0 0 chr11 92717545 92717636 -58065917 + AT_rich Low_complexity Low_complexity 1 91 0 31 0 0 0 chr11 92718624 92718655 -58064898 + AT_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr11 92718723 92718754 -58064799 + AT_rich Low_complexity Low_complexity 1 31 0 2317 110 0 0 chr11 92723151 92723452 -58060101 - AluSg SINE Alu -9 301 1 21279 82 12 21 chr11 92723828 92727621 -58055932 + L1PA7 LINE L1 2358 6153 -1 2916 9 0 0 chr11 92728451 92728769 -58054784 - AluYb8 SINE Alu 0 318 1 1879 148 19 0 chr11 92729783 92730100 -58053453 + L1MC1 LINE L1 6011 6333 0 2000 144 0 10 chr11 92730345 92730657 -58052896 + AluSx SINE Alu 1 309 -3 193 266 24 81 chr11 92731675 92731799 -58051754 - MIR3 SINE MIR -5 203 87 267 200 143 43 chr11 92733998 92734068 -58049485 + L2 LINE L2 3195 3271 -1 189 0 0 0 chr11 92734124 92734145 -58049408 + (T)n Simple_repeat Simple_repeat 1 21 0 579 265 31 56 chr11 92734523 92734719 -58048834 - MIR SINE MIR -70 192 2 238 287 191 0 chr11 92736024 92736118 -58047435 + L2 LINE L2 3141 3252 -20 833 206 164 42 chr11 92737372 92737659 -58045894 + MER5C DNA MER1_type 3 324 0 201 193 325 0 chr11 92738408 92738491 -58045062 - MIR SINE MIR -71 191 82 379 339 16 38 chr11 92739064 92739250 -58044303 - MIR SINE MIR -12 250 69 466 323 115 9 chr11 92739907 92740133 -58043420 - MIR SINE MIR -12 250 1 200 299 26 26 chr11 92741019 92741096 -58042457 - L2 LINE L2 -6 3266 3190 446 264 195 0 chr11 92741288 92741447 -58042106 - MIR SINE MIR -2 260 71 187 261 77 85 chr11 92741553 92741683 -58041870 + MIR SINE MIR 117 245 -17 641 280 95 0 chr11 92741722 92741911 -58041642 + MIR SINE MIR 53 259 -3 766 174 0 15 chr11 92742045 92742177 -58041376 + FLAM_C SINE Alu 2 131 -2 364 275 19 62 chr11 92743625 92743785 -58039768 + MIR SINE MIR 108 260 -2 413 297 54 50 chr11 92744992 92745214 -58038339 + MIR SINE MIR 29 251 -11 645 293 39 102 chr11 92745223 92745558 -58037995 + L2 LINE L2 2959 3272 0 536 228 156 18 chr11 92747165 92747332 -58036221 - MIR3 SINE MIR -16 192 3 306 0 0 0 chr11 92747789 92747823 -58035730 + (A)n Simple_repeat Simple_repeat 1 34 0 1465 167 0 0 chr11 92749762 92750014 -58033539 + AluY SINE Alu 60 311 0 372 22 0 0 chr11 92750391 92750436 -58033117 + (CA)n Simple_repeat Simple_repeat 2 46 0 245 355 176 29 chr11 92750438 92750683 -58032870 - L2 LINE L2 -32 3281 3001 2224 97 0 4 chr11 92750781 92751092 -58032461 - AluSg SINE Alu 0 312 3 2439 72 7 0 chr11 92751285 92751589 -58031964 - AluY SINE Alu -5 306 1 1052 234 4 17 chr11 92751766 92752001 -58031552 + MLT1B LTR MaLR 4 235 -155 2644 133 6 0 chr11 92752002 92752362 -58031191 - THE1B LTR MaLR 0 364 3 8624 103 50 1 chr11 92752364 92753573 -58029980 - THE1B-int LTR MaLR 0 1580 313 1204 223 127 16 chr11 92753573 92753896 -58029657 - MLT1F LTR MaLR -183 359 1 15387 118 34 47 chr11 92754297 92756747 -58026806 - Tigger1 DNA MER2_type 0 2418 1 22 0 0 0 chr11 92757049 92757071 -58026482 + AT_rich Low_complexity Low_complexity 1 22 0 362 302 22 22 chr11 92757265 92757404 -58026149 + L2 LINE L2 398 536 -2778 1178 270 85 87 chr11 92757441 92757624 -58025929 - L1MC5 LINE L1 -62 7899 7717 1832 157 0 26 chr11 92757624 92757930 -58025623 - AluJb SINE Alu -11 301 4 1178 270 85 87 chr11 92757930 92757942 -58025611 - L1MC5 LINE L1 -244 7717 7706 2249 125 0 3 chr11 92757942 92758254 -58025299 - AluSx SINE Alu -1 311 1 1178 270 85 87 chr11 92758254 92759708 -58023845 - L1MC5 LINE L1 -255 7706 6233 186 291 152 13 chr11 92759787 92759866 -58023687 - MIR SINE MIR -170 92 3 219 191 11 90 chr11 92759874 92759963 -58023590 - L2 LINE L2 -3015 299 218 417 264 74 8 chr11 92760305 92760426 -58023127 + L2 LINE L2 3182 3310 -3 826 246 115 52 chr11 92760909 92761388 -58022165 - L1MC4a LINE L1 -1617 6191 5683 598 303 46 8 chr11 92761863 92762104 -58021449 + MLT1L LTR MaLR 7 256 -359 22 0 0 0 chr11 92762326 92762348 -58021205 + AT_rich Low_complexity Low_complexity 1 22 0 478 248 8 8 chr11 92762992 92763113 -58020440 - MER45A DNA AcHobo 0 178 58 341 314 50 14 chr11 92763135 92763275 -58020278 + MIR SINE MIR 47 191 -71 469 228 84 96 chr11 92763510 92763948 -58019605 + MER115 DNA AcHobo 1 433 -260 189 0 0 0 chr11 92764330 92764351 -58019202 + (TTA)n Simple_repeat Simple_repeat 2 22 0 306 314 126 11 chr11 92764477 92764652 -58018901 + MIR SINE MIR 54 248 -14 393 301 90 23 chr11 92768354 92768487 -58015066 + L2 LINE L2 3169 3310 -3 234 0 0 0 chr11 92768539 92768565 -58014988 + (T)n Simple_repeat Simple_repeat 1 26 0 40 0 0 0 chr11 92768576 92768616 -58014937 + GC_rich Low_complexity Low_complexity 1 40 0 2894 10 0 0 chr11 92768774 92769085 -58014468 - AluY SINE Alu 0 311 1 278 315 92 22 chr11 92769501 92769815 -58013738 + L1M4 LINE L1 4577 4912 -1234 1982 128 10 40 chr11 92769826 92770130 -58013423 - AluSx SINE Alu -17 295 1 989 113 7 20 chr11 92770441 92770591 -58012962 + AluSq SINE Alu 9 156 -157 829 108 0 0 chr11 92770619 92770730 -58012823 - FLAM_C SINE Alu -32 111 1 212 351 13 0 chr11 92771062 92771139 -58012414 - L2 LINE L2 0 3313 3236 2294 144 57 10 chr11 92771604 92771992 -58011561 - MER65A LTR ERV1 0 445 40 690 92 28 18 chr11 92772138 92772247 -58011306 - L1MA5A LINE L1 -2 6295 6186 640 248 45 10 chr11 92772276 92772478 -58011075 + L1MC4 LINE L1 7741 7949 -93 323 300 158 79 chr11 92772951 92773497 -58010056 - L1M2 LINE L1 -5741 1108 520 24 0 0 0 chr11 92775125 92775149 -58008404 + AT_rich Low_complexity Low_complexity 1 24 0 285 29 0 0 chr11 92775812 92775846 -58007707 + (TA)n Simple_repeat Simple_repeat 1 34 0 552 259 18 18 chr11 92779839 92780005 -58003548 - L1ME4a LINE L1 0 6121 5956 932 191 82 5 chr11 92780375 92780569 -58002984 - MER3 DNA MER1_type 0 209 1 21 71 0 0 chr11 92782682 92782724 -58000829 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr11 92782884 92782905 -58000648 + AT_rich Low_complexity Low_complexity 1 21 0 202 169 31 0 chr11 92782923 92782988 -58000565 + (TA)n Simple_repeat Simple_repeat 2 68 0 2308 88 0 10 chr11 92783056 92783352 -58000201 + AluSq SINE Alu 2 294 -19 186 106 64 0 chr11 92784978 92785025 -57998528 + (TA)n Simple_repeat Simple_repeat 1 50 0 2023 129 7 0 chr11 92785640 92785926 -57997627 - AluSx SINE Alu -24 288 1 378 344 76 33 chr11 92786242 92786598 -57996955 + L2 LINE L2 2518 3008 -264 2414 85 3 0 chr11 92786716 92787021 -57996532 - AluSq SINE Alu -7 306 1 963 253 100 31 chr11 92787681 92788301 -57995252 + L1ME LINE L1 4980 5652 -514 642 261 149 5 chr11 92788302 92788490 -57995063 - MER58C DNA MER1_type 0 215 1 2252 91 7 3 chr11 92788574 92788872 -57994681 + AluSx SINE Alu 1 299 -13 509 159 11 0 chr11 92790396 92790484 -57993069 + Charlie5 DNA MER1_type 2536 2624 0 2075 122 3 38 chr11 92790936 92791121 -57992432 - AluSx SINE Alu -3 309 138 2354 80 0 3 chr11 92791121 92791420 -57992133 - AluY SINE Alu -13 298 1 2075 122 3 38 chr11 92791420 92791554 -57991999 - AluSx SINE Alu -174 138 1 213 267 87 80 chr11 92791938 92792088 -57991465 + L2 LINE L2 2313 2463 -851 200 292 194 14 chr11 92792552 92792624 -57990929 + L2 LINE L2 2542 2626 -688 679 327 72 28 chr11 92792746 92793177 -57990376 + L1ME LINE L1 3 452 -5618 805 252 54 19 chr11 92793427 92793740 -57989813 + L1M4 LINE L1 3086 3409 -2737 5319 241 67 32 chr11 92793849 92794154 -57989399 - L1MEc LINE L1 -1979 4236 3943 3132 163 33 0 chr11 92794154 92794633 -57988920 + LTR42 LTR ERVL 1 495 0 5319 241 67 32 chr11 92794633 92796055 -57987498 - L1MEc LINE L1 -2272 3943 2572 191 86 0 29 chr11 92796055 92796090 -57987463 + (TCCC)n Simple_repeat Simple_repeat 2 35 0 1793 150 40 0 chr11 92796090 92796364 -57987189 - AluJo SINE Alu -27 285 1 5319 241 67 32 chr11 92796364 92796718 -57986835 - L1MEc LINE L1 -3642 2573 2086 1499 203 57 83 chr11 92796760 92797232 -57986321 - MLT1C LTR MaLR -5 462 3 594 236 95 10 chr11 92797240 92797553 -57986000 - L1MEc LINE L1 -4361 2035 1670 2768 141 133 19 chr11 92797603 92798233 -57985320 - L1MB2 LINE L1 -9 6162 5461 1072 211 49 7 chr11 92798232 92798577 -57984976 - L1P LINE L1 -782 5364 5024 * 227 204 0 0 chr11 92798575 92798624 -57984929 - L1MEc LINE L1 -5259 1137 1089 * 292 301 184 0 chr11 92799132 92799268 -57984285 - MIR SINE MIR -11 251 91 1856 165 93 3 chr11 92799452 92799786 -57983767 + MLT1A1 LTR MaLR 2 365 0 695 281 87 13 chr11 92799788 92800019 -57983534 - MIR SINE MIR -6 256 9 287 211 0 18 chr11 92800474 92800531 -57983022 + L2 LINE L2 3242 3297 -16 300 337 113 35 chr11 92800642 92800852 -57982701 + L2 LINE L2 2969 3208 -64 2228 129 0 6 chr11 92800852 92801163 -57982390 - AluSx SINE Alu -3 309 1 300 337 113 35 chr11 92801163 92801234 -57982319 + L2 LINE L2 3208 3272 0 315 161 0 0 chr11 92801969 92802025 -57981528 + A-rich Low_complexity Low_complexity 3 58 0 2045 122 38 0 chr11 92802380 92802668 -57980885 - AluSx SINE Alu -13 299 1 398 327 148 11 chr11 92802723 92802986 -57980567 - L2 LINE L2 -10 3303 3005 576 282 53 0 chr11 92803057 92803227 -57980326 - MIR SINE MIR -17 245 67 189 188 50 125 chr11 92803309 92803389 -57980164 + MIR SINE MIR 116 189 -73 413 231 8 97 chr11 92803813 92803947 -57979606 - L2 LINE L2 -14 3299 3178 6610 24 0 0 chr11 92804187 92805019 -57978534 + L1PA3 LINE L1 5336 6167 0 553 224 0 14 chr11 92805034 92805177 -57978376 + L1MB8 LINE L1 6035 6175 -3 267 31 0 0 chr11 92805180 92805212 -57978341 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 1515 120 10 5 chr11 92805349 92805558 -57977995 + AluSg/x SINE Alu 81 290 -20 223 234 21 0 chr11 92806271 92806318 -57977235 - L2 LINE L2 -8 3264 3217 190 333 81 27 chr11 92806359 92806470 -57977083 - MIR SINE MIR -58 204 88 1224 91 0 0 chr11 92806873 92807027 -57976526 - AluSq SINE Alu -159 154 1 184 29 0 57 chr11 92807160 92807195 -57976358 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 466 277 38 11 chr11 92807530 92807714 -57975839 - MER5A DNA MER1_type 0 189 1 369 321 35 93 chr11 92808618 92808908 -57974645 - L2 LINE L2 -86 3186 2914 180 0 0 0 chr11 92811980 92812000 -57971553 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 254 206 14 0 chr11 92812621 92812694 -57970859 + GA-rich Low_complexity Low_complexity 1 74 0 224 222 0 16 chr11 92812892 92812955 -57970598 + CT-rich Low_complexity Low_complexity 3 64 0 2316 89 3 0 chr11 92814206 92814497 -57969056 + AluSg SINE Alu 2 293 -17 2201 118 0 0 chr11 92814733 92815030 -57968523 - AluSg SINE Alu -13 297 1 14672 122 23 33 chr11 92815404 92817847 -57965706 - Tigger1 DNA MER2_type 0 2418 1 2053 130 3 0 chr11 92817963 92818256 -57965297 - AluSq SINE Alu -19 294 1 22 0 0 0 chr11 92818426 92818448 -57965105 + AT_rich Low_complexity Low_complexity 1 22 0 931 148 0 0 chr11 92818455 92818590 -57964963 + AluJo SINE Alu 126 260 -52 1504 144 74 0 chr11 92819048 92819318 -57964235 - L1PA16 LINE L1 -10 6156 5867 479 345 96 50 chr11 92820201 92820502 -57963051 - L2 LINE L2 0 3272 2958 180 278 0 0 chr11 92821558 92821594 -57961959 - MIR SINE MIR -119 89 54 216 200 86 43 chr11 92821738 92821808 -57961745 + MIR SINE MIR 117 189 -73 25 0 0 0 chr11 92822193 92822218 -57961335 + AT_rich Low_complexity Low_complexity 1 25 0 2186 107 7 10 chr11 92822272 92822572 -57960981 - AluSx SINE Alu -13 299 1 540 286 133 17 chr11 92822870 92823104 -57960449 + MIR SINE MIR 2 262 0 2035 134 7 0 chr11 92823150 92823448 -57960105 - AluSp SINE Alu -13 300 1 26 30 0 0 chr11 92823457 92823490 -57960063 + AT_rich Low_complexity Low_complexity 1 33 0 4769 96 152 0 chr11 92823625 92824342 -57959211 - LTR12 LTR ERV1 0 826 1 5154 99 4 12 chr11 92824351 92825122 -57958431 - HERV9 LTR ERV1 -9 8390 7626 1981 168 87 70 chr11 92825121 92825934 -57957619 - Harlequin LTR ERV1 -5157 1739 840 * 26809 96 12 9 chr11 92825935 92830778 -57952775 - Harlequin LTR ERV1 -3455 4944 1 5315 82 113 0 chr11 92830778 92831520 -57952033 - LTR12 LTR ERV1 0 826 1 190 310 26 44 chr11 92831634 92831747 -57951806 + L2 LINE L2 2677 2787 -527 2264 97 3 0 chr11 92831811 92832110 -57951443 - AluSx SINE Alu -12 300 1 334 270 119 16 chr11 92832163 92832289 -57951264 + L2 LINE L2 3174 3312 -1 384 262 199 18 chr11 92832500 92832673 -57950880 + MIR3 SINE MIR 6 206 -56 1735 190 0 3 chr11 92833873 92834173 -57949380 - AluJo SINE Alu -13 299 1 888 256 187 0 chr11 92834848 92835202 -57948351 - L2 LINE L2 -236 3077 2664 632 218 223 0 chr11 92835203 92835391 -57948162 + AluJb SINE Alu 82 311 -1 2121 240 49 39 chr11 92835419 92836069 -57947484 - L2 LINE L2 -639 2675 2019 433 185 98 0 chr11 92836071 92836163 -57947390 - MER63C DNA MER1_type 0 930 830 2212 106 0 3 chr11 92836168 92836461 -57947092 + AluSc SINE Alu 1 292 -17 832 168 0 0 chr11 92836499 92836624 -57946929 + FLAM_C SINE Alu 1 125 -18 2838 211 65 7 chr11 92836639 92837399 -57946154 - MER63C DNA MER1_type -122 808 5 327 178 144 11 chr11 92837403 92837493 -57946060 - L2 LINE L2 -1291 2023 1922 1028 269 85 9 chr11 92837493 92837809 -57945744 - L2 LINE L2 -1660 1654 1315 192 279 15 15 chr11 92838081 92838149 -57945404 - L2 LINE L2 -219 3053 2986 383 164 48 25 chr11 92838226 92838319 -57945234 - MIR SINE MIR -76 132 39 254 93 0 23 chr11 92838437 92838480 -57945073 + (GA)n Simple_repeat Simple_repeat 2 43 0 242 286 0 0 chr11 92838483 92838539 -57945014 + (TG)n Simple_repeat Simple_repeat 2 57 0 186 43 0 0 chr11 92839283 92839306 -57944247 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 26 0 0 0 chr11 92839777 92839803 -57943750 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr11 92839856 92839886 -57943667 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr11 92839963 92839998 -57943555 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr11 92840418 92840449 -57943104 + AT_rich Low_complexity Low_complexity 1 31 0 2055 138 3 3 chr11 92841396 92841700 -57941853 - AluSg SINE Alu -6 304 1 877 149 0 0 chr11 92841703 92841837 -57941716 - AluJo SINE Alu -178 134 1 29 60 0 0 chr11 92841997 92842047 -57941506 + AT_rich Low_complexity Low_complexity 1 50 0 2297 104 3 0 chr11 92842716 92843023 -57940530 - AluSg SINE Alu -2 308 1 361 315 82 34 chr11 92843786 92843932 -57939621 - L2 LINE L2 -1 3271 3119 869 210 16 27 chr11 92844301 92844487 -57939066 + MER5A DNA MER1_type 2 185 -4 186 71 0 0 chr11 92844741 92844769 -57938784 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 * 308 109 0 18 chr11 92844767 92844822 -57938731 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 1632 194 16 7 chr11 92844831 92845140 -57938413 - AluJb SINE Alu 0 312 1 288 263 75 12 chr11 92845887 92845967 -57937586 - L2 LINE L2 0 3313 3229 2104 117 7 17 chr11 92846051 92846351 -57937202 - AluSg SINE Alu -13 297 1 234 255 122 20 chr11 92847451 92847549 -57936004 + L2 LINE L2 3113 3220 -93 331 318 114 6 chr11 92847600 92847776 -57935777 - L2 LINE L2 -1 3312 3118 13518 168 46 8 chr11 92847884 92851793 -57931760 + L1PB1 LINE L1 496 4583 -2279 2040 123 3 20 chr11 92851793 92852094 -57931459 + AluSg SINE Alu 1 296 -14 13518 168 46 8 chr11 92852094 92852437 -57931116 + L1PB1 LINE L1 4583 4911 -1951 5192 153 44 7 chr11 92852446 92853428 -57930125 + L1PB1 LINE L1 5508 6553 -314 378 0 0 0 chr11 92853428 92853470 -57930083 + (CA)n Simple_repeat Simple_repeat 2 43 0 5192 153 44 7 chr11 92853470 92853796 -57929757 + L1PB1 LINE L1 6553 6865 -2 1490 199 62 0 chr11 92854325 92854438 -57929115 + AluJb SINE Alu 3 108 -204 276 77 0 0 chr11 92854438 92854477 -57929076 + (CAA)n Simple_repeat Simple_repeat 1 39 0 1490 199 62 0 chr11 92854477 92854639 -57928914 + AluJb SINE Alu 108 295 -17 457 196 9 9 chr11 92854640 92854752 -57928801 + (TA)n Simple_repeat Simple_repeat 2 113 0 387 0 0 0 chr11 92855104 92855147 -57928406 + (T)n Simple_repeat Simple_repeat 1 43 0 29 0 0 0 chr11 92855794 92855823 -57927730 + AT_rich Low_complexity Low_complexity 1 29 0 40 24 0 0 chr11 92855867 92855909 -57927644 + AT_rich Low_complexity Low_complexity 1 42 0 31 44 0 0 chr11 92856175 92856220 -57927333 + AT_rich Low_complexity Low_complexity 1 45 0 1020 126 0 0 chr11 92856252 92856416 -57927137 - FLAM_C SINE Alu 0 164 1 1659 306 118 20 chr11 92856502 92857256 -57926297 + L2 LINE L2 728 1555 -1759 1271 261 49 13 chr11 92857263 92857297 -57926256 - LTR33 LTR ERVL -2 519 488 1834 123 17 40 chr11 92857297 92857627 -57925926 - AluSx SINE Alu 0 312 1 1271 261 49 13 chr11 92857627 92858066 -57925487 - LTR33 LTR ERVL -33 488 12 1022 251 4 22 chr11 92858190 92858457 -57925096 + MIR SINE MIR 1 262 0 786 283 0 0 chr11 92858508 92858685 -57924868 + LTR33 LTR ERVL 104 280 -241 2379 105 30 28 chr11 92858685 92859048 -57924505 - THE1B LTR MaLR 0 364 1 934 199 0 0 chr11 92859107 92859263 -57924290 + AluSg/x SINE Alu 135 290 -20 2360 274 137 38 chr11 92859263 92859551 -57924002 + L2 LINE L2 1788 2046 -1267 6002 108 12 7 chr11 92859551 92861234 -57922319 - L1PA13 LINE L1 0 6163 4480 2360 274 137 38 chr11 92861234 92862329 -57921224 + L2 LINE L2 2046 3312 -1 1312 290 113 50 chr11 92863015 92863399 -57920154 - L2 LINE L2 -12 3301 2943 1873 171 0 13 chr11 92863399 92863704 -57919849 - AluJo SINE Alu -11 301 1 1312 290 113 50 chr11 92863704 92864049 -57919504 - L2 LINE L2 -370 2943 2621 2283 153 68 2 chr11 92864049 92864448 -57919105 - MSTB LTR MaLR 0 426 2 1312 290 113 50 chr11 92864448 92864748 -57918805 - L2 LINE L2 -692 2621 2186 22 0 0 0 chr11 92864932 92864954 -57918599 + AT_rich Low_complexity Low_complexity 1 22 0 377 253 51 63 chr11 92865209 92865367 -57918186 - LTR67 LTR ERVL -7 550 395 2342 166 29 17 chr11 92865693 92866114 -57917439 - MSTB LTR MaLR 0 426 1 217 269 120 19 chr11 92866561 92866669 -57916884 - MIR SINE MIR 0 262 144 5528 214 61 51 chr11 92866752 92868524 -57915029 + L1MB7 LINE L1 14 1809 -4833 736 199 7 0 chr11 92868535 92868681 -57914872 + L1MB7 LINE L1 3112 3258 -3386 674 164 117 0 chr11 92868685 92868813 -57914740 - Charlie1 DNA MER1_type -666 2095 1953 808 172 188 32 chr11 92868830 92869016 -57914537 - L1PA16 LINE L1 -9 6157 5943 * 1908 111 29 55 chr11 92869010 92869354 -57914199 - L1PA16 LINE L1 -456 5710 5376 * 9378 206 47 18 chr11 92869350 92869626 -57913927 + L1MB7 LINE L1 3257 3524 -3158 2203 132 0 0 chr11 92869626 92869937 -57913616 + AluSx SINE Alu 1 311 -1 9378 206 47 18 chr11 92869937 92870643 -57912910 + L1MB7 LINE L1 3524 4208 -2474 2098 137 0 0 chr11 92870643 92870943 -57912610 + AluSq SINE Alu 1 300 -13 9378 206 47 18 chr11 92870943 92872198 -57911355 + L1MB7 LINE L1 4208 5425 -1257 1445 210 76 12 chr11 92872198 92872541 -57911012 + MLT1A1 LTR MaLR 1 365 0 9378 206 47 18 chr11 92872541 92873613 -57909940 + L1MB7 LINE L1 5425 6662 -20 4229 218 84 20 chr11 92873620 92875531 -57908022 + L1ME1 LINE L1 4017 6032 -134 237 235 99 0 chr11 92875532 92875613 -57907940 - L1ME LINE L1 -387 5775 5687 455 220 13 13 chr11 92875613 92875763 -57907790 + L1MA10 LINE L1 6184 6333 -1 398 261 34 17 chr11 92875767 92875886 -57907667 - MIR SINE MIR -138 124 4 183 80 0 0 chr11 92876205 92876230 -57907323 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 480 287 40 49 chr11 92876329 92876576 -57906977 + MIR SINE MIR 6 250 -12 22 0 0 0 chr11 92876635 92876657 -57906896 + AT_rich Low_complexity Low_complexity 1 22 0 575 240 39 22 chr11 92876960 92877139 -57906414 + MIR SINE MIR 72 253 -9 1489 156 107 28 chr11 92877595 92877884 -57905669 - AluJo SINE Alu 0 312 1 1884 182 0 10 chr11 92877901 92878208 -57905345 - AluJb SINE Alu -8 304 1 2849 217 68 14 chr11 92878235 92878939 -57904614 - L1ME1 LINE L1 -5 6161 5420 353 39 20 0 chr11 92879097 92879148 -57904405 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 34 24 0 0 chr11 92879366 92879407 -57904146 + AT_rich Low_complexity Low_complexity 1 41 0 2295 85 3 3 chr11 92879505 92879798 -57903755 + AluSc SINE Alu 1 293 -16 5750 166 19 9 chr11 92880001 92882021 -57901532 - L1PA16 LINE L1 -8 6158 4125 2484 198 178 9 chr11 92882856 92883529 -57900024 - LTR48 LTR ERV1 0 787 1 264 301 9 9 chr11 92883657 92883770 -57899783 - L1MEd LINE L1 -2607 3522 3410 2299 170 57 114 chr11 92883780 92884516 -57899037 - LTR8A LTR ERV1 0 727 34 247 266 91 62 chr11 92884567 92884984 -57898569 - L1MEd LINE L1 -2762 3367 2939 339 172 0 17 chr11 92885438 92885496 -57898057 + AluY SINE Alu 102 158 -143 482 289 21 47 chr11 92885508 92885698 -57897855 + L2 LINE L2 3128 3312 -1 637 134 76 89 chr11 92885719 92885876 -57897677 + L2 LINE L2 3158 3312 -1 751 262 104 53 chr11 92885901 92886724 -57896829 - L1MEd LINE L1 -4755 1374 527 186 43 0 0 chr11 92886840 92886863 -57896690 + (T)n Simple_repeat Simple_repeat 1 23 0 332 314 44 50 chr11 92887006 92887165 -57896388 - L1MEd LINE L1 -5913 206 49 32 57 0 0 chr11 92887366 92887419 -57896134 + AT_rich Low_complexity Low_complexity 1 53 0 359 277 58 22 chr11 92888291 92888428 -57895125 - LTR28 LTR ERV1 0 1020 879 888 241 273 16 chr11 92888455 92888825 -57894728 - LTR28 LTR ERV1 -48 972 508 3891 115 17 3 chr11 92888825 92889407 -57894146 - MER41B LTR ERV1 -44 591 2 32101 104 12 57 chr11 92889516 92895957 -57887596 + L1PA7 LINE L1 12 6152 -2 231 174 0 0 chr11 92896263 92896309 -57887244 - MIR3 SINE MIR 0 208 163 33 56 0 0 chr11 92897430 92897484 -57886069 + AT_rich Low_complexity Low_complexity 1 54 0 441 261 50 0 chr11 92897484 92897603 -57885950 + MIR3 SINE MIR 73 197 -11 281 275 72 21 chr11 92897844 92897993 -57885560 - LTR23 LTR ERV1 0 445 304 3663 163 23 49 chr11 92898032 92898829 -57884724 - LTR1 LTR ERV1 0 785 10 252 98 0 0 chr11 92899209 92899250 -57884303 - L1MA3 LINE L1 -6 6299 6259 862 207 10 16 chr11 92899294 92899487 -57884066 - L1MB7 LINE L1 -37 6147 5956 1459 148 43 149 chr11 92899488 92899946 -57883607 - MER39 LTR ERV1 -2 642 314 4984 102 6 0 chr11 92899946 92900635 -57882918 - L1PA10 LINE L1 -11 6157 5465 1459 148 43 149 chr11 92900635 92900720 -57882833 - MER39 LTR ERV1 -330 314 222 759 65 72 109 chr11 92900720 92900800 -57882753 - LTR12 LTR ERV1 0 714 640 2427 80 0 6 chr11 92900800 92901113 -57882440 - AluY SINE Alu 0 311 1 759 65 72 109 chr11 92901113 92901170 -57882383 - LTR12 LTR ERV1 -74 640 582 3974 126 76 110 chr11 92901170 92902025 -57881528 - LTR12 LTR ERV1 0 826 1 894 229 34 48 chr11 92902211 92902503 -57881050 - pTR5 LTR ERV1 -1410 1028 741 575 204 126 30 chr11 92902513 92902680 -57880873 - MER39 LTR ERV1 -524 183 1 2391 129 15 43 chr11 92902681 92902709 -57880844 - L1MB7 LINE L1 -225 5959 5932 1942 145 7 3 chr11 92902709 92903012 -57880541 - AluJb SINE Alu -6 306 3 2391 129 15 43 chr11 92903012 92903448 -57880105 - L1MB7 LINE L1 -252 5932 5508 34 0 0 0 chr11 92903543 92903577 -57879976 + AT_rich Low_complexity Low_complexity 1 34 0 4406 143 19 8 chr11 92903858 92904597 -57878956 + L1PA16 LINE L1 5404 6150 -16 180 0 0 0 chr11 92904654 92904674 -57878879 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 1435 158 153 0 chr11 92904716 92904970 -57878583 + AluSx SINE Alu 17 309 -3 959 151 0 6 chr11 92905305 92905471 -57878082 + L1P4 LINE L1 5659 5823 -343 292 129 14 14 chr11 92905471 92905541 -57878012 + (TA)n Simple_repeat Simple_repeat 1 70 0 2111 130 0 0 chr11 92905625 92905946 -57877607 + AluSx SINE Alu 1 321 0 472 282 8 17 chr11 92906968 92907109 -57876444 + MIR SINE MIR 50 186 -62 25 0 0 0 chr11 92907920 92907945 -57875608 + AT_rich Low_complexity Low_complexity 1 25 0 2249 119 0 6 chr11 92908328 92908639 -57874914 + AluSg SINE Alu 1 309 -1 2235 115 3 22 chr11 92908653 92908965 -57874588 + AluSp SINE Alu 1 306 -7 446 223 33 92 chr11 92909570 92909754 -57873799 - MLT1I LTR MaLR -6 403 231 533 230 46 0 chr11 92909881 92910033 -57873520 - L1ME3A LINE L1 -287 5952 5794 737 261 6 0 chr11 92910097 92910262 -57873291 - MER45A DNA AcHobo 0 178 13 515 226 255 19 chr11 92910316 92910524 -57873029 - L1ME3A LINE L1 -521 5710 5454 6705 80 14 0 chr11 92910524 92911770 -57871783 + L1PA8 LINE L1 4915 6172 0 305 227 0 2 chr11 92911820 92911913 -57871640 - L1ME3A LINE L1 -776 5467 5376 802 154 14 0 chr11 92912184 92912327 -57871226 - MLT2B1 LTR ERVL -373 147 3 1080 239 58 5 chr11 92912329 92912729 -57870824 - L1ME3A LINE L1 -910 1666 1412 2114 275 30 5 chr11 92912734 92913399 -57870154 - L1ME3A LINE L1 -5680 716 35 636 286 22 42 chr11 92913467 92913824 -57869729 - L1M4 LINE L1 -1958 4188 3839 204 114 0 29 chr11 92913914 92913949 -57869604 + (GGAA)n Simple_repeat Simple_repeat 4 37 0 370 229 39 98 chr11 92914005 92914159 -57869394 - L1ME3 LINE L1 -108 6054 5913 1721 199 0 3 chr11 92914159 92914455 -57869098 + AluJb SINE Alu 5 299 -13 370 229 39 98 chr11 92914455 92914505 -57869048 - L1ME3 LINE L1 -249 5913 5862 29 28 0 0 chr11 92914512 92914548 -57869005 + AT_rich Low_complexity Low_complexity 1 36 0 6592 113 4 9 chr11 92914548 92915625 -57867928 - L1MA3 LINE L1 0 6305 5235 1463 143 4 50 chr11 92915655 92915935 -57867618 - THE1C LTR MaLR -108 267 1 9462 132 46 9 chr11 92915935 92917456 -57866097 - THE1C-int LTR MaLR 0 1580 4 2157 128 18 47 chr11 92917456 92917836 -57865717 - THE1C LTR MaLR -4 371 1 8853 188 27 78 chr11 92917837 92918407 -57865146 - L1MA3 LINE L1 -908 5238 4640 234 0 0 0 chr11 92918407 92918433 -57865120 + (TG)n Simple_repeat Simple_repeat 1 26 0 8853 188 27 78 chr11 92918433 92918769 -57864784 - L1MA3 LINE L1 -1506 4640 4288 684 175 7 36 chr11 92918769 92918906 -57864647 + AluJo SINE Alu 1 133 -169 1760 133 146 19 chr11 92918916 92919239 -57864314 - THE1B LTR MaLR 0 364 1 11420 96 6 11 chr11 92919239 92920827 -57862726 - THE1B-int LTR MaLR 0 1580 1 2211 106 50 36 chr11 92920829 92921186 -57862367 - THE1B LTR MaLR -2 362 1 896 143 87 37 chr11 92921186 92921347 -57862206 + AluJo SINE Alu 138 306 -6 8853 188 27 78 chr11 92921347 92922862 -57860691 - L1MA3 LINE L1 -1865 4281 2773 371 233 23 153 chr11 92923408 92923584 -57859969 - MIR SINE MIR -96 166 14 428 308 66 43 chr11 92924608 92924819 -57858734 + MIR SINE MIR 47 262 0 4023 140 13 9 chr11 92925588 92926279 -57857274 - L1PA16 LINE L1 -2 6164 5471 1292 127 39 65 chr11 92926999 92927228 -57856325 + AluJo SINE Alu 84 306 -6 389 312 29 22 chr11 92927324 92927462 -57856091 - L3 LINE CR1 -62 1515 1377 7628 27 3 6 chr11 92927566 92928648 -57854905 - L1PA4 LINE L1 -3 6152 5072 706 149 0 0 chr11 92928904 92929011 -57854542 - U6 snRNA snRNA 0 107 1 386 247 12 12 chr11 92929208 92929293 -57854260 + L2 LINE L2 3229 3313 0 363 283 63 58 chr11 92929341 92929532 -57854021 - L3 LINE CR1 -295 1282 1091 227 302 0 0 chr11 92930078 92930131 -57853422 - L2 LINE L2 -10 3303 3251 265 169 0 0 chr11 92930158 92930223 -57853330 - L1ME4a LINE L1 -3 6118 6054 1143 264 150 22 chr11 92930273 92930679 -57852874 - L2 LINE L2 -4 3309 2852 212 70 163 0 chr11 92930664 92930707 -57852846 - L2 LINE L2 -578 2736 2687 * 30342 69 5 4 chr11 92930709 92934987 -57848566 + L1P LINE L1 1125 5403 -743 195 42 0 0 chr11 92934992 92935016 -57848537 + (TCC)n Simple_repeat Simple_repeat 3 26 0 1724 184 3 3 chr11 92935016 92935299 -57848254 - AluJo SINE Alu -29 283 1 1014 134 112 5 chr11 92935303 92935490 -57848063 - MSTC LTR MaLR -221 207 1 376 295 212 5 chr11 92935492 92935685 -57847868 - L2 LINE L2 -621 2693 2461 640 273 50 10 chr11 92935817 92936117 -57847436 - L1ME4a LINE L1 -214 5956 5645 3085 62 2 10 chr11 92936117 92936521 -57847032 - L1PA8 LINE L1 -3 6169 5769 * 7394 97 6 0 chr11 92936514 92938366 -57845187 - L1PA7 LINE L1 0 6154 4300 207 0 0 0 chr11 92938368 92938391 -57845162 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2511 7 0 0 chr11 92938394 92938689 -57844864 - L1HS LINE L1 0 6155 5861 * 24970 131 11 19 chr11 92938683 92943016 -57840537 - L1PA7 LINE L1 -1837 4309 11 3826 72 10 0 chr11 92943025 92943614 -57839939 - L1P3 LINE L1 -386 5786 5193 618 300 78 3 chr11 92943614 92943974 -57839579 - L1ME4a LINE L1 -515 5655 5269 733 229 43 122 chr11 92944729 92945074 -57838479 + MLT1A2 LTR MaLR 1 318 -56 567 208 0 19 chr11 92945106 92945265 -57838288 + CT-rich Low_complexity Low_complexity 1 156 0 779 215 12 29 chr11 92945278 92945450 -57838103 - AluJo SINE Alu -29 283 115 451 299 86 17 chr11 92945493 92945667 -57837886 - L2 LINE L2 -233 3080 2895 691 181 59 29 chr11 92946619 92946646 -57836907 - L1MA8 LINE L1 -4 6287 6262 442 68 82 41 chr11 92946646 92946719 -57836834 - MADE1 DNA Mariner -1 79 4 691 181 59 29 chr11 92946719 92946895 -57836658 - L1MA8 LINE L1 -29 6262 6078 * 7080 184 44 26 chr11 92946882 92948735 -57834818 - L1 LINE L1 -1330 5518 3632 1446 224 4 4 chr11 92948740 92949012 -57834541 - AluJo SINE Alu -9 303 32 25 0 0 0 chr11 92949029 92949054 -57834499 + AT_rich Low_complexity Low_complexity 1 25 0 9052 226 31 63 chr11 92949103 92950386 -57833167 - L1 LINE L1 -3230 3618 2296 2106 100 8 118 chr11 92950386 92950548 -57833005 - THE1A LTR MaLR 0 355 261 2085 137 0 0 chr11 92950548 92950840 -57832713 - AluSg SINE Alu -18 292 1 2106 100 8 118 chr11 92950840 92951076 -57832477 - THE1A LTR MaLR -94 261 1 9052 226 31 63 chr11 92951076 92953528 -57830025 - L1 LINE L1 -4552 2296 1 7700 27 0 0 chr11 92953585 92954692 -57828861 - L1PA3 LINE L1 0 6155 5049 231 292 0 0 chr11 92954692 92954757 -57828796 + G-rich Low_complexity Low_complexity 1 65 0 1861 102 0 0 chr11 92955055 92955290 -57828263 - AluSq SINE Alu -78 235 1 1683 216 24 80 chr11 92955290 92955919 -57827634 - L1M1 LINE L1 -4391 3174 2581 2860 240 144 52 chr11 92956045 92957669 -57825884 - L1M1 LINE L1 -5253 2236 463 303 221 35 47 chr11 92957892 92957978 -57825575 - MIR SINE MIR -121 141 57 1087 276 51 22 chr11 92958408 92958879 -57824674 - L1ME3 LINE L1 -215 5930 5439 1982 136 27 83 chr11 92958879 92959290 -57824263 + MLT1B LTR MaLR 3 390 0 1087 276 51 22 chr11 92959290 92959366 -57824187 - L1ME3 LINE L1 -706 5439 5367 1730 197 46 3 chr11 92959450 92959800 -57823753 + MLT1A1 LTR MaLR 1 365 0 499 306 96 29 chr11 92959810 92960091 -57823462 - L1ME3 LINE L1 -873 5256 4957 541 253 90 12 chr11 92960240 92960406 -57823147 - MIR SINE MIR -37 225 47 1602 183 32 7 chr11 92960632 92960750 -57822803 + AluJo SINE Alu 3 117 -195 207 0 0 0 chr11 92960750 92960773 -57822780 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1602 183 32 7 chr11 92960773 92960939 -57822614 + AluJo SINE Alu 117 294 -18 415 291 78 57 chr11 92961521 92961751 -57821802 - L1ME3 LINE L1 -2477 3652 3418 431 235 118 48 chr11 92961881 92962068 -57821485 - L1ME3 LINE L1 -2965 3164 2965 233 228 46 119 chr11 92962071 92962290 -57821263 - MER3 DNA MER1_type 0 209 7 305 358 20 20 chr11 92962443 92962591 -57820962 - L1ME3 LINE L1 -3555 2574 2427 329 326 70 3 chr11 92962600 92962971 -57820582 - L1ME3 LINE L1 -3639 2490 2095 22 0 0 0 chr11 92963428 92963450 -57820103 + AT_rich Low_complexity Low_complexity 1 22 0 1594 239 69 81 chr11 92963591 92964325 -57819228 - MER52A LTR ERV1 0 1755 971 2351 90 7 0 chr11 92964325 92964626 -57818927 + AluSc SINE Alu 1 303 -6 1594 239 69 81 chr11 92964626 92964931 -57818622 - MER52A LTR ERV1 -784 971 664 267 267 87 53 chr11 92965095 92965600 -57817953 - L1ME3 LINE L1 -4903 1216 695 1894 141 23 39 chr11 92966176 92966482 -57817071 - AluSx SINE Alu -11 301 1 886 246 109 7 chr11 92966792 92967068 -57816485 - L2 LINE L2 -338 2976 2673 788 314 57 0 chr11 92967631 92967879 -57815674 - L2 LINE L2 -657 2657 2396 1397 213 14 17 chr11 92967965 92968101 -57815452 + AluJo SINE Alu 1 136 -176 21972 42 2 4 chr11 92968101 92971615 -57811938 + L1PA4 LINE L1 2642 6154 -1 1397 213 14 17 chr11 92971615 92971774 -57811779 + AluJo SINE Alu 136 295 -17 2209 129 0 3 chr11 92971799 92972108 -57811445 - AluSg SINE Alu -2 308 1 1588 209 76 67 chr11 92972136 92972686 -57810867 + LTR8A LTR ERV1 173 727 0 291 114 0 0 chr11 92972877 92972921 -57810632 + (TG)n Simple_repeat Simple_repeat 2 45 0 1321 219 44 15 chr11 92973126 92973400 -57810153 - AluJo SINE Alu -26 286 5 1051 249 27 39 chr11 92973741 92974078 -57809475 - MLT1B LTR MaLR 0 390 58 7373 38 7 0 chr11 92974087 92975133 -57808420 - L1PA4 LINE L1 0 6155 5107 16013 222 48 17 chr11 92976229 92982735 -57800818 + L1PA15 LINE L1 1 6973 -630 2339 127 57 5 chr11 92982735 92983123 -57800430 + L1PA15 LINE L1 7182 7603 0 28 48 0 0 chr11 92984294 92984336 -57799217 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr11 92984547 92984575 -57798978 + AT_rich Low_complexity Low_complexity 1 28 0 686 161 16 16 chr11 92984576 92984700 -57798853 + FLAM_C SINE Alu 1 124 -19 450 295 12 58 chr11 92984702 92984875 -57798678 - MIR SINE MIR -16 246 82 474 158 24 0 chr11 92984886 92984968 -57798585 - Tigger1 DNA MER2_type -9 2409 2326 1063 328 150 20 chr11 92984971 92985769 -57797784 - L2 LINE L2 -587 2727 1826 1151 291 95 51 chr11 92985771 92986285 -57797268 + L1MEd LINE L1 3 493 -5626 2242 102 3 7 chr11 92986285 92986578 -57796975 - AluSp SINE Alu -21 292 1 1151 291 95 51 chr11 92986578 92987265 -57796288 + L1MEd LINE L1 493 1257 -4862 432 274 119 23 chr11 92987267 92987486 -57796067 + L1MEd LINE L1 3010 3249 -2880 203 138 0 0 chr11 92987486 92987515 -57796038 + (GGGAGA)n Simple_repeat Simple_repeat 6 34 0 2031 162 68 15 chr11 92987556 92988012 -57795541 - LTR65 LTR ERV1 -180 489 10 192 343 217 0 chr11 92988043 92988186 -57795367 + L3 LINE CR1 88 261 -1316 249 281 24 0 chr11 92988328 92988410 -57795143 - MIR SINE MIR -106 156 73 2132 140 17 61 chr11 92988750 92989158 -57794395 - MLT1B LTR MaLR 0 390 1 26 74 0 0 chr11 92989541 92989595 -57793958 + AT_rich Low_complexity Low_complexity 1 54 0 300 53 0 0 chr11 92989595 92989633 -57793920 + (CA)n Simple_repeat Simple_repeat 2 39 0 292 325 187 5 chr11 92989708 92989911 -57793642 + MIR SINE MIR 23 262 0 336 289 39 10 chr11 92990432 92990536 -57793017 + MIR SINE MIR 84 190 -72 2214 94 0 7 chr11 92990728 92991026 -57792527 - AluSq SINE Alu -17 296 1 539 125 0 0 chr11 92991554 92991634 -57791919 - MADE1 DNA Mariner 0 80 1 365 308 30 0 chr11 92991826 92991959 -57791594 - MLT1J2 LTR MaLR -311 139 3 220 306 35 69 chr11 92992725 92992869 -57790684 - MIR SINE MIR -42 220 82 337 270 144 0 chr11 92992931 92993042 -57790511 - MIR3 SINE MIR -4 204 78 184 56 0 56 chr11 92993478 92993514 -57790039 + (TTC)n Simple_repeat Simple_repeat 1 34 0 1454 190 15 68 chr11 92993516 92993842 -57789711 - AluJo SINE Alu -3 309 1 1224 318 130 30 chr11 92993842 92994720 -57788833 + L2 LINE L2 2348 3313 0 344 256 244 32 chr11 92994720 92994876 -57788677 + L2 LINE L2 3125 3313 0 471 288 135 6 chr11 92996035 92996205 -57787348 - MIR SINE MIR -6 256 65 697 326 23 5 chr11 92996243 92996464 -57787089 - MIR SINE MIR -26 236 12 308 272 41 89 chr11 92996682 92996763 -57786790 - MIR SINE MIR -54 208 138 2374 76 0 10 chr11 92996763 92997065 -57786488 + AluY SINE Alu 1 299 -12 308 272 41 89 chr11 92997065 92997152 -57786401 - MIR SINE MIR -124 138 48 2679 193 97 45 chr11 92997152 92997894 -57785659 + L1MD2 LINE L1 5518 6298 -61 362 21 0 0 chr11 92997894 92997941 -57785612 - MADE1 DNA Mariner -1 79 33 25 51 0 0 chr11 92997972 92998011 -57785542 + AT_rich Low_complexity Low_complexity 1 39 0 2259 167 44 5 chr11 92998094 92998507 -57785046 + MSTB1 LTR MaLR 4 432 0 205 191 24 0 chr11 92998597 92998639 -57784914 + (CTTTA)n Simple_repeat Simple_repeat 2 44 0 289 336 118 9 chr11 92998844 92998954 -57784599 + L2 LINE L2 3132 3253 -19 2583 97 3 3 chr11 92999092 92999464 -57784089 - L1PA8 LINE L1 0 6172 5801 22874 161 13 22 chr11 92999564 93004294 -57779259 - L1P3 LINE L1 -961 5500 794 2283 171 7 7 chr11 93004306 93004734 -57778819 - L1P3 LINE L1 -5372 503 76 611 162 0 0 chr11 93004735 93004840 -57778713 + ALR/Alpha Satellite centromeric 67 171 0 752 179 0 0 chr11 93004926 93005049 -57778504 - AluSg/x SINE Alu -9 303 181 261 309 27 11 chr11 93005356 93005544 -57778009 - L1ME LINE L1 -254 5867 5677 7276 38 7 7 chr11 93005553 93006570 -57776983 - L1PA4 LINE L1 0 6155 5133 27938 59 4 0 chr11 93006570 93010270 -57773283 - L1PA4 LINE L1 -2431 3715 1 383 316 25 24 chr11 93010289 93010486 -57773067 - L1ME LINE L1 -484 5637 5462 300 231 89 65 chr11 93010486 93010655 -57772898 - L1M2 LINE L1 -4952 1897 1725 219 36 0 0 chr11 93010872 93010900 -57772653 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 813 199 11 11 chr11 93010950 93011131 -57772422 - MLT1A2 LTR MaLR -2 372 192 305 306 25 103 chr11 93011138 93011315 -57772238 + MIR SINE MIR 17 172 -90 298 315 35 0 chr11 93011320 93011463 -57772090 - MLT1L LTR MaLR -4 611 464 6963 188 119 94 chr11 93011481 93013132 -57770421 + L1PB1 LINE L1 6 1962 -4900 1274 189 0 0 chr11 93013132 93013328 -57770225 + AluSx SINE Alu 2 197 -115 6963 188 119 94 chr11 93013328 93014506 -57769047 + L1PB1 LINE L1 1962 3109 -3753 25170 116 14 33 chr11 93014513 93019691 -57763862 + L1P3 LINE L1 1 5179 -1282 6739 70 11 0 chr11 93019691 93021059 -57762494 + L1PA7 LINE L1 4795 6152 -2 2003 199 0 0 chr11 93021059 93021476 -57762077 + L1PB1 LINE L1 3099 3515 -3347 * 5285 178 23 0 chr11 93021472 93023135 -57760418 + L1PB1 LINE L1 4818 6442 -425 234 0 0 0 chr11 93023135 93023161 -57760392 + (TA)n Simple_repeat Simple_repeat 2 27 0 * 378 0 0 0 chr11 93023160 93023202 -57760351 + (TG)n Simple_repeat Simple_repeat 1 42 0 5285 178 23 0 chr11 93023161 93023543 -57760010 + L1PB1 LINE L1 6442 6859 -8 249 322 55 52 chr11 93023545 93023834 -57759719 - MLT1K LTR MaLR -140 448 159 220 294 0 0 chr11 93024627 93024695 -57758858 + T-rich Low_complexity Low_complexity 1 68 0 226 324 54 14 chr11 93025191 93025265 -57758288 + L2 LINE L2 3149 3225 -47 465 248 35 0 chr11 93025319 93025432 -57758121 + MER91B DNA MER1_type 12 128 -62 548 228 0 0 chr11 93025451 93025552 -57758001 + MER91B DNA MER1_type 90 190 0 32 43 0 0 chr11 93025560 93025606 -57757947 + AT_rich Low_complexity Low_complexity 1 46 0 414 239 325 12 chr11 93026053 93026216 -57757337 - MIR SINE MIR -1 261 48 348 251 209 26 chr11 93026432 93026623 -57756930 - MIR SINE MIR -21 241 16 269 294 174 9 chr11 93026647 93026756 -57756797 + MIR3 SINE MIR 32 158 -50 292 328 30 45 chr11 93026822 93026956 -57756597 + MIR SINE MIR 61 192 -70 4801 22 0 0 chr11 93026966 93027547 -57756006 + L1PA3 LINE L1 5590 6170 0 21 100 0 0 chr11 93027698 93027768 -57755785 + AT_rich Low_complexity Low_complexity 1 70 0 315 305 40 13 chr11 93027768 93027919 -57755634 - L1ME4a LINE L1 -7 6114 5960 990 306 47 26 chr11 93027926 93028393 -57755160 + LTR16C LTR ERVL 1 477 -14 243 290 58 0 chr11 93028501 93028570 -57754983 - MIR SINE MIR -185 77 5 1193 282 83 45 chr11 93028651 93029247 -57754306 + L2 LINE L2 2696 3313 0 787 322 31 4 chr11 93030151 93030406 -57753147 + MIR SINE MIR 1 262 0 454 365 56 53 chr11 93031549 93032244 -57751309 + L2 LINE L2 2065 2761 -553 13228 73 1 4 chr11 93032431 93034979 -57748574 - L1PA6 LINE L1 -5 6149 3606 10473 33 0 0 chr11 93034985 93037012 -57746541 - L1PA3 LINE L1 0 6155 4129 21412 128 11 12 chr11 93037021 93040637 -57742916 - L1PA6 LINE L1 -2524 3622 11 1477 219 56 26 chr11 93040758 93041188 -57742365 - LTR47B LTR ERVL 0 443 1 545 118 8 50 chr11 93041598 93041717 -57741836 - L1MA8 LINE L1 -5 6286 6173 2168 90 0 10 chr11 93041862 93042163 -57741390 - L1PB1 LINE L1 -6 6861 6564 404 169 0 0 chr11 93042191 93042262 -57741291 + L1PB1 LINE L1 5782 5852 -299 315 0 0 0 chr11 93042262 93042297 -57741256 + (CA)n Simple_repeat Simple_repeat 2 36 0 13134 170 36 15 chr11 93042312 93047918 -57735635 - L1PB1 LINE L1 -360 6507 634 984 150 10 20 chr11 93047918 93048118 -57735435 - L1PB1 LINE L1 -6663 200 3 1991 124 28 3 chr11 93048749 93049039 -57734514 + AluSq SINE Alu 11 307 -6 248 183 0 17 chr11 93049090 93049150 -57734403 + CT-rich Low_complexity Low_complexity 3 61 0 289 269 192 0 chr11 93049354 93049458 -57734095 - MIR SINE MIR -29 233 110 684 300 30 15 chr11 93049509 93049709 -57733844 + MIR SINE MIR 31 233 -29 438 289 78 65 chr11 93050913 93051055 -57732498 - MIR SINE MIR -6 256 107 1349 139 5 19 chr11 93051055 93051368 -57732185 + AluSx SINE Alu 1 310 0 438 289 78 65 chr11 93051368 93051456 -57732097 - MIR SINE MIR -155 107 22 346 140 0 0 chr11 93051550 93051607 -57731946 - L1M4 LINE L1 -1477 4669 4613 491 264 54 8 chr11 93051631 93051760 -57731793 + MIR SINE MIR 54 188 -74 5529 187 46 23 chr11 93052438 93054582 -57728971 - L1MB7 LINE L1 -9 6175 3986 497 267 138 36 chr11 93054582 93054807 -57728746 + Charlie8 DNA MER1_type 27 274 -2143 2206 118 0 3 chr11 93055246 93055550 -57728003 - AluSp SINE Alu -10 303 1 301 312 147 0 chr11 93057452 93057561 -57725992 - MIR SINE MIR -93 169 45 480 262 0 0 chr11 93058007 93058148 -57725405 + (TA)n Simple_repeat Simple_repeat 2 142 0 215 254 82 45 chr11 93058287 93058397 -57725156 + L2 LINE L2 3190 3303 -10 275 314 131 15 chr11 93058528 93058665 -57724888 - MIR SINE MIR -109 153 1 675 236 182 5 chr11 93058776 93058996 -57724557 + MIR SINE MIR 4 262 0 277 318 39 48 chr11 93059419 93059574 -57723979 + MIR3 SINE MIR 1 153 -67 200 373 93 53 chr11 93059625 93059872 -57723681 + L2 LINE L2 3004 3260 -12 775 120 23 30 chr11 93060396 93060529 -57723024 - FLAM_C SINE Alu -1 132 1 272 208 0 13 chr11 93060822 93060899 -57722654 + A-rich Low_complexity Low_complexity 2 77 0 987 88 7 68 chr11 93061287 93061435 -57722118 + AluSq/x SINE Alu 9 147 -165 429 394 39 11 chr11 93061435 93061793 -57721760 - HERV16 LTR ERVL -4581 415 48 730 304 72 4 chr11 93061847 93062084 -57721469 - LTR16A LTR ERVL -16 434 182 1819 146 54 30 chr11 93062085 93062420 -57721133 - MER61A LTR ERV1 0 343 1 23057 115 39 3 chr11 93062420 93066194 -57717359 - MER61A-int LTR ERV1 0 5217 1320 3179 179 43 20 chr11 93066224 93066915 -57716638 - MER61A-int LTR ERV1 -4510 707 1 992 162 79 8 chr11 93066915 93067156 -57716397 - MER61A LTR ERV1 0 343 1 305 318 26 39 chr11 93067176 93067330 -57716223 - LTR16A LTR ERVL -285 165 14 676 274 116 17 chr11 93067343 93067584 -57715969 - L2 LINE L2 -654 2660 2396 361 320 154 33 chr11 93067700 93068122 -57715431 + L1M1 LINE L1 3409 3881 -2265 623 269 42 42 chr11 93068141 93068357 -57715196 - MIR SINE MIR 0 262 47 776 296 32 14 chr11 93068441 93068661 -57714892 - MIR SINE MIR -8 254 31 225 292 14 0 chr11 93069115 93069187 -57714366 + L1M1 LINE L1 5499 5571 -731 356 254 72 55 chr11 93069215 93069451 -57714102 + L1ME4a LINE L1 5613 5852 -269 23 54 0 0 chr11 93069532 93069569 -57713984 + AT_rich Low_complexity Low_complexity 1 37 0 4621 61 10 3 chr11 93069842 93070433 -57713120 - L1PA7 LINE L1 -6 6148 5554 196 366 22 52 chr11 93070831 93070965 -57712588 + MIR3 SINE MIR 73 202 -6 1163 235 108 70 chr11 93071238 93071711 -57711842 - LTR16C LTR ERVL 0 491 1 191 317 0 0 chr11 93072204 93072245 -57711308 + L2 LINE L2 3249 3289 -24 2902 187 5 23 chr11 93073280 93073572 -57709981 + L1 LINE L1 4124 4420 -1726 194 0 39 0 chr11 93073572 93073598 -57709955 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2902 187 5 23 chr11 93073598 93073673 -57709880 + L1 LINE L1 4420 4495 -1651 1575 179 54 0 chr11 93073673 93073952 -57709601 + AluJb SINE Alu 1 294 -18 2902 187 5 23 chr11 93073952 93074241 -57709312 + L1 LINE L1 4495 4769 -1377 2224 113 30 16 chr11 93074241 93074612 -57708941 + L1PB4 LINE L1 5781 6156 0 988 88 0 0 chr11 93074639 93074764 -57708789 + AluSg/x SINE Alu 167 291 -21 275 281 121 33 chr11 93074785 93074993 -57708560 + MIR SINE MIR 37 262 0 249 250 78 0 chr11 93075020 93075084 -57708469 + MIR SINE MIR 69 137 -125 634 266 36 21 chr11 93075465 93075657 -57707896 - MIR SINE MIR -2 260 66 186 281 117 47 chr11 93075940 93076068 -57707485 - L3 LINE CR1 -225 1352 1216 299 352 41 21 chr11 93076303 93076448 -57707105 + L2 LINE L2 3121 3268 -4 206 365 43 9 chr11 93077319 93077434 -57706119 + L2 LINE L2 2508 2626 -688 204 234 0 21 chr11 93077795 93077842 -57705711 + CT-rich Low_complexity Low_complexity 3 48 0 532 276 49 65 chr11 93077949 93078134 -57705419 + MIR SINE MIR 7 188 -74 287 0 0 0 chr11 93078134 93078166 -57705387 + L1PA6 LINE L1 6109 6140 -14 225 0 0 0 chr11 93078167 93078192 -57705361 + (TA)n Simple_repeat Simple_repeat 2 26 0 1606 59 0 0 chr11 93078422 93078609 -57704944 + AluY SINE Alu 16 202 -109 477 0 0 0 chr11 93078609 93078662 -57704891 + (CA)n Simple_repeat Simple_repeat 2 54 0 527 65 0 13 chr11 93079060 93079137 -57704416 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 289 268 0 0 chr11 93079147 93079203 -57704350 - L2 LINE L2 -61 3211 3156 23 0 0 0 chr11 93080228 93080251 -57703302 + AT_rich Low_complexity Low_complexity 1 23 0 192 359 0 0 chr11 93080655 93080708 -57702845 + L2 LINE L2 3245 3297 -16 192 77 0 0 chr11 93081134 93081160 -57702393 + (TG)n Simple_repeat Simple_repeat 1 26 0 7080 62 0 0 chr11 93081907 93083311 -57700242 - L1PA6 LINE L1 -2 6152 4749 * 18244 68 5 0 chr11 93083309 93086494 -57697059 + L1PA6 LINE L1 2961 6154 0 358 224 10 41 chr11 93086495 93086593 -57696960 - LTR29 LTR ERV1 -364 258 164 342 202 160 0 chr11 93086593 93086712 -57696841 - MER4D LTR ERV1 -611 292 155 * 1392 148 29 4 chr11 93086702 93086945 -57696608 - MER4D LTR ERV1 -654 249 1 362 331 51 69 chr11 93087000 93087332 -57696221 - L2 LINE L2 -669 2645 2320 2211 115 0 7 chr11 93087388 93087693 -57695860 + AluSc SINE Alu 6 308 -1 1824 82 0 25 chr11 93087693 93087936 -57695617 + AluSc SINE Alu 71 309 0 1054 164 0 0 chr11 93087941 93088106 -57695447 + AluJb SINE Alu 142 306 -6 1477 265 97 30 chr11 93088158 93088758 -57694795 - LTR48B LTR ERV1 0 644 5 3375 129 65 0 chr11 93089149 93089416 -57694137 + MER41C LTR ERV1 1 249 -305 2485 68 0 3 chr11 93089416 93089724 -57693829 + AluY SINE Alu 1 307 -4 3375 129 65 0 chr11 93089724 93089976 -57693577 + MER41C LTR ERV1 249 554 0 350 331 57 8 chr11 93090288 93090412 -57693141 + MIR SINE MIR 2 131 -131 209 367 71 0 chr11 93091738 93091836 -57691717 - MIR SINE MIR -111 151 47 306 164 0 0 chr11 93092214 93092269 -57691284 + (TG)n Simple_repeat Simple_repeat 1 55 0 234 361 53 30 chr11 93092398 93092531 -57691022 - L2 LINE L2 -1 3271 3136 339 297 48 14 chr11 93092675 93092820 -57690733 + L1MC4 LINE L1 7597 7746 -296 6855 148 40 4 chr11 93093041 93094219 -57689334 + Tigger3b DNA MER2_type 12 1231 0 508 273 29 12 chr11 93094285 93094457 -57689096 + L1MC4a LINE L1 4045 4219 -1927 2241 88 0 7 chr11 93094484 93094806 -57688747 + AluY SINE Alu 1 320 0 461 297 46 24 chr11 93094900 93095240 -57688313 + L1MC4a LINE L1 4904 5262 -884 7155 51 1 1 chr11 93095272 93096158 -57687395 - L1PA6 LINE L1 -15 6139 5254 3211 256 37 37 chr11 93096169 93096917 -57686636 + L1MC4a LINE L1 5254 6004 -1804 2311 52 45 0 chr11 93096917 93097206 -57686347 + AluY SINE Alu 1 302 -9 3211 256 37 37 chr11 93097206 93097573 -57685980 + L1MC4a LINE L1 6003 6369 -1439 531 250 86 40 chr11 93097752 93098076 -57685477 - L1MEd LINE L1 -4921 1198 860 276 200 67 0 chr11 93098088 93098148 -57685405 - Tigger3(Golem) DNA MER2_type -5 3024 2961 394 333 13 27 chr11 93098335 93098485 -57685068 + MER5A DNA MER1_type 41 188 -1 719 208 0 0 chr11 93098525 93098655 -57684898 + FLAM_C SINE Alu 2 131 -2 9912 223 19 7 chr11 93099841 93099954 -57683599 + L1PA15 LINE L1 1754 1864 -4301 1866 88 0 4 chr11 93099954 93100205 -57683348 - L1PA7 LINE L1 -4 6150 5901 9912 223 19 7 chr11 93100205 93104450 -57679103 + L1PA15 LINE L1 1864 6162 -3 210 71 0 0 chr11 93105089 93105117 -57678436 + (T)n Simple_repeat Simple_repeat 1 28 0 43100 31 21 1 chr11 93105119 93111151 -57672402 - L1HS LINE L1 0 6155 1 192 314 167 10 chr11 93111479 93111581 -57671972 - L2 LINE L2 -4 3309 3192 3100 141 16 2 chr11 93111995 93112543 -57671010 + L1MA4 LINE L1 5743 6298 -2 595 318 127 42 chr11 93112796 93113199 -57670354 - L2 LINE L2 -448 2866 2430 183 42 0 0 chr11 93113253 93113277 -57670276 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 535 363 102 30 chr11 93113312 93113883 -57669670 - L2 LINE L2 -1967 1347 736 2573 296 87 47 chr11 93113950 93114872 -57668681 + L2 LINE L2 1717 2726 -587 243 0 0 0 chr11 93114872 93114899 -57668654 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2573 296 87 47 chr11 93114899 93115454 -57668099 + L2 LINE L2 2726 3257 -56 538 324 6 23 chr11 93115528 93115704 -57667849 + MIR3 SINE MIR 30 202 -6 24 32 0 0 chr11 93116836 93116867 -57666686 + AT_rich Low_complexity Low_complexity 1 31 0 1402 127 14 0 chr11 93117996 93118217 -57665336 - L1PA13 LINE L1 -12 6151 5928 524 341 53 83 chr11 93118662 93119134 -57664419 + L2 LINE L2 2814 3271 -1 325 206 20 0 chr11 93121398 93121500 -57662053 + (TA)n Simple_repeat Simple_repeat 2 105 0 295 263 212 0 chr11 93121693 93121811 -57661742 + L2 LINE L2 3167 3309 -4 599 280 52 77 chr11 93122466 93122752 -57660801 - MLT1J2 LTR MaLR 0 450 172 22 0 0 0 chr11 93122757 93122779 -57660774 + AT_rich Low_complexity Low_complexity 1 22 0 610 276 82 0 chr11 93122806 93122976 -57660577 - MLT1J2 LTR MaLR -266 184 1 47 86 0 0 chr11 93123449 93123566 -57659987 + AT_rich Low_complexity Low_complexity 1 117 0 461 308 163 52 chr11 93123980 93124380 -57659173 + L3 LINE CR1 1061 1504 -73 701 294 96 0 chr11 93124430 93124648 -57658905 + MIR SINE MIR 23 261 -1 749 245 43 14 chr11 93124715 93124923 -57658630 - MER58C DNA MER1_type -1 214 1 262 337 34 0 chr11 93125923 93126012 -57657541 - L2 LINE L2 -25 3288 3197 226 409 41 6 chr11 93126147 93126318 -57657235 - L2 LINE L2 -341 2973 2797 525 265 183 53 chr11 93126553 93126930 -57656623 - MLT1H LTR MaLR -14 535 110 212 293 121 35 chr11 93127006 93127122 -57656431 + MIR SINE MIR 137 262 0 705 308 57 1 chr11 93127299 93127608 -57655945 - LTR33 LTR ERVL -163 358 1 2205 109 3 0 chr11 93127698 93128037 -57655516 - AluSx SINE Alu 0 312 1 212 227 0 0 chr11 93128722 93128766 -57654787 - L2 LINE L2 0 3313 3270 2303 79 0 7 chr11 93129038 93129329 -57654224 + AluY SINE Alu 1 289 -22 454 248 80 0 chr11 93129553 93129666 -57653887 + L2 LINE L2 3192 3313 0 731 282 108 4 chr11 93129729 93129959 -57653594 - MIR SINE MIR -6 256 3 2435 77 0 3 chr11 93130097 93130409 -57653144 + AluY SINE Alu 1 311 0 318 366 13 59 chr11 93130729 93130882 -57652671 + L2 LINE L2 3117 3262 -10 * 546 277 10 45 chr11 93130854 93131056 -57652497 - L2 LINE L2 0 3313 3119 299 280 27 0 chr11 93131066 93131141 -57652412 + L2 LINE L2 1846 1922 -1392 1220 161 54 0 chr11 93131192 93131416 -57652137 - MER46A DNA MER2_type 0 236 1 517 268 39 13 chr11 93132059 93132212 -57651341 - MIR3 SINE MIR -15 193 37 905 263 32 16 chr11 93132831 93133082 -57650471 + MIR SINE MIR 7 261 -1 205 171 0 0 chr11 93133084 93133119 -57650434 + (TTG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr11 93133244 93133265 -57650288 + AT_rich Low_complexity Low_complexity 1 21 0 445 320 55 11 chr11 93134192 93134373 -57649180 + MIR3 SINE MIR 10 198 -10 1892 158 0 0 chr11 93134683 93134989 -57648564 - AluSx SINE Alu 0 308 3 361 296 121 8 chr11 93135739 93135871 -57647682 + L2 LINE L2 3167 3313 0 1051 199 11 0 chr11 93136071 93136257 -57647296 + MER5A DNA MER1_type 2 189 0 756 288 68 4 chr11 93136587 93136823 -57646730 + MIR SINE MIR 12 262 0 26 30 0 0 chr11 93136930 93136963 -57646590 + AT_rich Low_complexity Low_complexity 1 33 0 300 296 43 9 chr11 93137030 93137145 -57646408 - L1MC4 LINE L1 -150 7892 7774 640 242 68 31 chr11 93137266 93137570 -57645983 - L1MC4 LINE L1 -330 7712 7307 583 237 124 0 chr11 93137580 93137774 -57645779 - L1MC4 LINE L1 -1367 6675 6458 268 219 12 37 chr11 93138251 93138333 -57645220 + GA-rich Low_complexity Low_complexity 5 84 0 316 220 22 39 chr11 93138870 93139052 -57644501 + (TATAA)n Simple_repeat Simple_repeat 2 180 0 216 200 0 0 chr11 93139392 93139447 -57644106 + A-rich Low_complexity Low_complexity 1 55 0 205 345 176 14 chr11 93140296 93140438 -57643115 + MIR SINE MIR 8 172 -90 562 233 60 0 chr11 93141321 93141437 -57642116 - MIR SINE MIR -121 141 19 331 221 159 0 chr11 93141643 93141756 -57641797 - L1MC4 LINE L1 -4 8038 7908 192 228 0 0 chr11 93141759 93141816 -57641737 + (TA)n Simple_repeat Simple_repeat 2 58 0 742 204 22 0 chr11 93141816 93141953 -57641600 - AluJo SINE Alu -172 140 1 2444 197 128 126 chr11 93141994 93142499 -57641054 - L1MC4 LINE L1 -155 7887 7384 651 165 38 53 chr11 93142499 93142632 -57640921 - FLAM_C SINE Alu -12 131 1 2444 197 128 126 chr11 93142632 93143105 -57640448 - L1MC4 LINE L1 -658 7384 6775 698 127 0 8 chr11 93143168 93143286 -57640267 + (TCCC)n Simple_repeat Simple_repeat 4 120 0 2079 146 0 3 chr11 93144028 93144336 -57639217 + AluSx SINE Alu 1 307 -5 264 203 0 58 chr11 93145491 93145560 -57637993 + MER5A DNA MER1_type 26 90 -99 874 179 17 50 chr11 93147217 93147396 -57636157 - AluJb SINE Alu 0 312 140 30 69 0 0 chr11 93147705 93147763 -57635790 + AT_rich Low_complexity Low_complexity 1 58 0 872 298 70 10 chr11 93148036 93148699 -57634854 - L1ME3 LINE L1 -267 5895 5185 441 254 100 0 chr11 93148720 93148850 -57634703 - L1MA10 LINE L1 -23 6311 6169 1781 197 30 54 chr11 93148871 93149368 -57634185 - L1MC3 LINE L1 -791 6994 6510 4551 191 62 10 chr11 93149388 93150385 -57633168 - L1MC3 LINE L1 -1054 6731 5683 295 303 10 20 chr11 93151044 93151143 -57632410 + Charlie7 DNA MER1_type 5 102 -2510 22 0 0 0 chr11 93151196 93151218 -57632335 + AT_rich Low_complexity Low_complexity 1 22 0 629 296 78 32 chr11 93151787 93152132 -57631421 - L1ME4a LINE L1 -198 5923 5563 22 0 0 0 chr11 93152184 93152206 -57631347 + AT_rich Low_complexity Low_complexity 1 22 0 357 298 114 25 chr11 93152277 93152522 -57631031 - L1ME4a LINE L1 -753 5393 5127 21 71 0 0 chr11 93152488 93152530 -57631023 + AT_rich Low_complexity Low_complexity 1 42 0 * 26 74 0 0 chr11 93152612 93152666 -57630887 + AT_rich Low_complexity Low_complexity 1 54 0 3220 107 14 8 chr11 93152669 93153156 -57630397 - L1PA13 LINE L1 -6 6157 5668 4627 147 22 19 chr11 93153406 93154254 -57629299 - L1MA4 LINE L1 -1 6299 5449 354 243 87 0 chr11 93154262 93154365 -57629188 - L2 LINE L2 -491 2823 2712 760 256 83 17 chr11 93155444 93155674 -57627879 + MIR SINE MIR 4 248 -14 194 275 133 42 chr11 93155692 93155812 -57627741 + MIR SINE MIR 86 216 -46 191 173 13 53 chr11 93156501 93156576 -57626977 + CT-rich Low_complexity Low_complexity 4 75 0 384 268 84 56 chr11 93156950 93157092 -57626461 - MIR SINE MIR -70 192 47 232 237 53 13 chr11 93157289 93157302 -57626251 - MIR SINE MIR -36 226 215 1776 112 8 0 chr11 93157302 93157544 -57626009 - AluSp SINE Alu -16 297 54 232 237 53 13 chr11 93157544 93157606 -57625947 - MIR SINE MIR -47 215 148 283 277 69 0 chr11 93157647 93157748 -57625805 - MIR SINE MIR -98 164 57 196 388 30 8 chr11 93157939 93158073 -57625480 - L2 LINE L2 -562 2752 2616 275 306 94 50 chr11 93160027 93160187 -57623366 + L2 LINE L2 3106 3272 0 2842 135 120 42 chr11 93160755 93161356 -57622197 - MER39B LTR ERV1 -5 648 1 717 176 7 7 chr11 93161394 93161536 -57622017 + MLT2C1 LTR ERVL 1 142 -255 7221 56 2 0 chr11 93161663 93163347 -57620206 - L1PA5 LINE L1 -13 6141 4457 1061 170 70 0 chr11 93163347 93163547 -57620006 + MLT2C1 LTR ERVL 129 342 -55 2480 112 36 14 chr11 93163555 93163911 -57619642 - THE1B LTR MaLR 0 364 1 10907 106 23 0 chr11 93163911 93165454 -57618099 - THE1B-int LTR MaLR -1 1579 1 2410 125 28 14 chr11 93165454 93165813 -57617740 - THE1B LTR MaLR 0 364 1 344 130 19 0 chr11 93165831 93165885 -57617668 + MLT2C1 LTR ERVL 500 554 0 651 285 5 45 chr11 93165901 93166101 -57617452 - MIR SINE MIR 0 262 71 249 311 98 30 chr11 93166268 93166400 -57617153 - MIR SINE MIR -3 259 119 1727 139 158 75 chr11 93167312 93167685 -57615868 - MER4A LTR ERV1 0 664 261 255 127 380 14 chr11 93167686 93167757 -57615796 - MER4A LTR ERV1 -567 97 1 235 259 62 0 chr11 93167831 93167912 -57615641 + MIR SINE MIR 175 260 -2 285 98 0 0 chr11 93167997 93168038 -57615515 + (CA)n Simple_repeat Simple_repeat 2 42 0 227 346 81 29 chr11 93168361 93168497 -57615056 - L2 LINE L2 -3 3269 3127 1466 223 36 30 chr11 93168516 93168879 -57614674 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr11 93169150 93169171 -57614382 + AT_rich Low_complexity Low_complexity 1 21 0 1895 87 4 0 chr11 93169299 93169553 -57614000 - L1PA7 LINE L1 -1 6153 5899 240 226 32 16 chr11 93169553 93169615 -57613938 - LTR28 LTR ERV1 -87 933 871 * 1891 241 109 52 chr11 93169602 93170408 -57613145 - LTR28 LTR ERV1 -37 983 1 271 325 170 42 chr11 93170440 93170652 -57612901 + MIR SINE MIR 20 258 -4 223 350 95 51 chr11 93170746 93171026 -57612527 - L2 LINE L2 -238 3075 2779 1900 176 48 3 chr11 93171739 93172096 -57611457 + MER83C LTR ERV1 1 373 0 4217 226 70 34 chr11 93172096 93173044 -57610509 + MER83C-int LTR ERV1 12 798 -4129 4972 78 8 1 chr11 93173044 93173700 -57609853 - PABL_A LTR ERV1 0 660 1 4217 226 70 34 chr11 93173700 93173964 -57609589 + MER83C-int LTR ERV1 798 1051 -3876 2119 140 14 20 chr11 93174180 93174530 -57609023 + MER83C-int LTR ERV1 4527 4874 -6 2013 161 39 6 chr11 93174543 93174904 -57608649 + MER83C LTR ERV1 1 373 0 310 325 138 0 chr11 93175098 93175221 -57608332 + L3 LINE CR1 1020 1159 -418 301 331 73 44 chr11 93175230 93175366 -57608187 + L2 LINE L2 3133 3272 0 230 240 280 29 chr11 93175383 93175558 -57607995 + L3 LINE CR1 1174 1392 -185 581 259 110 11 chr11 93175679 93175884 -57607669 - MIR SINE MIR -19 243 22 197 310 35 35 chr11 93175969 93176056 -57607497 - L2 LINE L2 0 3313 3227 2220 135 80 10 chr11 93176455 93176855 -57606698 - MSTA LTR MaLR 0 428 1 437 286 61 14 chr11 93176925 93177072 -57606481 + MIR SINE MIR 103 256 -6 247 292 17 100 chr11 93177938 93178058 -57605495 + MIR SINE MIR 31 140 -122 4193 139 96 5 chr11 93179167 93179924 -57603629 - LTR1B LTR ERV1 0 826 1 238 238 20 40 chr11 93180056 93180157 -57603396 + CT-rich Low_complexity Low_complexity 1 99 0 22 80 0 0 chr11 93180819 93180869 -57602684 + AT_rich Low_complexity Low_complexity 1 50 0 2285 87 7 7 chr11 93180904 93181202 -57602351 - AluY SINE Alu -13 298 1 425 311 95 41 chr11 93181369 93181736 -57601817 - L1ME4a LINE L1 -1 6120 5734 1732 201 133 102 chr11 93181743 93182466 -57601087 + LTR1B LTR ERV1 1 745 -81 262 149 21 0 chr11 93182647 93182694 -57600859 - L1ME4a LINE L1 -456 5665 5618 1925 107 8 0 chr11 93183313 93183576 -57599977 - AluY SINE Alu -8 303 39 1829 280 42 71 chr11 93183983 93185175 -57598378 - MER69B DNA AcHobo -53 1173 17 256 176 14 14 chr11 93186467 93186541 -57597012 + (TA)n Simple_repeat Simple_repeat 1 74 0 23 68 0 0 chr11 93187476 93187520 -57596033 + AT_rich Low_complexity Low_complexity 1 44 0 291 288 50 44 chr11 93188375 93188535 -57595018 - L2 LINE L2 -145 3168 3008 21 57 0 0 chr11 93188656 93188691 -57594862 + AT_rich Low_complexity Low_complexity 1 35 0 210 162 0 0 chr11 93189370 93189407 -57594146 + GA-rich Low_complexity Low_complexity 5 41 0 2160 298 34 38 chr11 93189686 93190715 -57592838 - L2 LINE L2 -2 3311 2282 401 329 53 10 chr11 93191861 93192068 -57591485 - MIR SINE MIR -6 256 41 269 380 28 0 chr11 93192087 93192195 -57591358 - MIR SINE MIR -56 152 42 304 207 0 0 chr11 93192341 93192399 -57591154 - MIR SINE MIR -133 129 72 320 320 45 70 chr11 93192488 93192644 -57590909 - L2 LINE L2 0 3272 3121 27 0 0 0 chr11 93193241 93193268 -57590285 + AT_rich Low_complexity Low_complexity 1 27 0 495 284 71 34 chr11 93193359 93193740 -57589813 + HAL1 LINE L1 1175 1569 -938 1052 298 75 39 chr11 93194457 93195560 -57587993 + L1ME3A LINE L1 4072 5214 -932 1310 273 59 22 chr11 93195656 93196299 -57587254 + L1ME3A LINE L1 5268 5940 -230 8608 138 32 29 chr11 93196313 93197387 -57586166 + Tigger2 DNA MER2_type 1 1083 -1635 2183 125 0 0 chr11 93197387 93197744 -57585809 + AluSx SINE Alu 5 312 0 8608 138 32 29 chr11 93197744 93198177 -57585376 + Tigger2 DNA MER2_type 1083 1513 -1205 1254 161 18 14 chr11 93198175 93198393 -57585160 - MER49 LTR ERV1 -704 219 1 * 477 169 67 0 chr11 93198394 93198483 -57585070 + Tigger2 DNA MER2_type 2614 2708 -10 27 29 0 0 chr11 93198510 93198544 -57585009 + AT_rich Low_complexity Low_complexity 1 34 0 345 258 92 81 chr11 93199073 93199279 -57584274 + MIR SINE MIR 30 234 -28 2044 194 8 10 chr11 93199282 93199668 -57583885 + MLT1B LTR MaLR 1 385 -5 488 207 54 0 chr11 93199739 93199850 -57583703 + MIR SINE MIR 102 218 -44 201 121 0 0 chr11 93200538 93200571 -57582982 + (TGGA)n Simple_repeat Simple_repeat 2 34 0 24 32 0 0 chr11 93201078 93201109 -57582444 + AT_rich Low_complexity Low_complexity 1 31 0 639 242 31 12 chr11 93201767 93201928 -57581625 + L2 LINE L2 3149 3312 -1 180 0 0 0 chr11 93202210 93202230 -57581323 + (A)n Simple_repeat Simple_repeat 1 20 0 923 293 70 13 chr11 93203006 93203378 -57580175 + Charlie2b DNA MER1_type 282 674 -2108 570 208 51 17 chr11 93203427 93203605 -57579948 + Charlie2a DNA MER1_type 1465 1648 -1214 300 364 7 7 chr11 93203639 93203790 -57579763 + L1MEc LINE L1 55 205 -6191 1895 244 85 103 chr11 93204201 93204845 -57578708 + L1MEc LINE L1 660 1314 -5082 1479 195 57 68 chr11 93204845 93205214 -57578339 - MLT1A1 LTR MaLR 0 365 1 1895 244 85 103 chr11 93205214 93205801 -57577752 + L1MEc LINE L1 1314 1910 -4486 6782 60 16 0 chr11 93205801 93206707 -57576846 - L1PA7 LINE L1 -16 6138 5219 1895 244 85 103 chr11 93206707 93207373 -57576180 + L1MEc LINE L1 1910 2523 -3873 801 285 77 71 chr11 93207701 93208306 -57575247 - L2 LINE L2 -2 3311 2665 24 32 0 0 chr11 93208652 93208683 -57574870 + AT_rich Low_complexity Low_complexity 1 31 0 1023 110 0 0 chr11 93209355 93209491 -57574062 - FRAM SINE Alu -11 165 30 423 106 0 0 chr11 93209616 93209682 -57573871 + (TCCA)n Simple_repeat Simple_repeat 1 66 0 41 66 0 0 chr11 93209705 93209781 -57573772 + AT_rich Low_complexity Low_complexity 1 76 0 234 354 114 23 chr11 93209815 93210332 -57573221 - L2 LINE L2 -746 2568 2005 203 357 57 68 chr11 93210358 93210728 -57572825 - L2 LINE L2 -1729 1585 1220 271 239 73 0 chr11 93211196 93211305 -57572248 - L1ME4a LINE L1 -3 6118 6002 726 290 28 20 chr11 93211757 93212012 -57571541 - MIR SINE MIR -1 261 5 1174 225 7 25 chr11 93212294 93212570 -57570983 - AluJb SINE Alu -37 275 5 22 35 0 0 chr11 93213187 93213216 -57570337 + AT_rich Low_complexity Low_complexity 1 29 0 849 237 103 9 chr11 93213233 93213465 -57570088 + MIR SINE MIR 6 259 -3 186 103 0 0 chr11 93213568 93213597 -57569956 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 1896 166 0 6 chr11 93213660 93213782 -57569771 + AluSx SINE Alu 1 122 -190 243 0 0 0 chr11 93213782 93213809 -57569744 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1896 166 0 6 chr11 93213809 93214000 -57569553 + AluSx SINE Alu 122 312 0 485 313 90 6 chr11 93214096 93214262 -57569291 + MIR SINE MIR 13 192 -70 2175 76 19 67 chr11 93214569 93214883 -57568670 + AluY SINE Alu 1 299 -12 27 0 0 0 chr11 93215127 93215154 -57568399 + AT_rich Low_complexity Low_complexity 1 27 0 30 59 0 0 chr11 93215262 93215313 -57568240 + AT_rich Low_complexity Low_complexity 1 51 0 1069 296 78 38 chr11 93215426 93215903 -57567650 + L2 LINE L2 2817 3312 -1 1204 232 55 19 chr11 93216090 93216445 -57567108 + MLT1C LTR MaLR 1 378 -89 284 320 129 27 chr11 93216455 93216680 -57566873 - L2 LINE L2 -43 3270 3023 5805 138 8 20 chr11 93216691 93217762 -57565791 - L1PA16 LINE L1 -9 6157 5108 1375 227 3 31 chr11 93217761 93218114 -57565439 + L1PA16 LINE L1 4771 5113 -1033 * 229 288 25 0 chr11 93218149 93218229 -57565324 - L2 LINE L2 -294 2978 2897 252 0 0 0 chr11 93218579 93218607 -57564946 + (TG)n Simple_repeat Simple_repeat 1 28 0 26 0 0 0 chr11 93218745 93218771 -57564782 + AT_rich Low_complexity Low_complexity 1 26 0 2225 102 0 0 chr11 93218932 93219225 -57564328 + AluSg1 SINE Alu 1 293 -16 533 214 17 17 chr11 93219769 93219886 -57563667 - FLAM_A SINE Alu -12 121 5 229 214 0 57 chr11 93219943 93220013 -57563540 + L2 LINE L2 3171 3236 -77 927 194 214 56 chr11 93220027 93220504 -57563049 - MER34B LTR ERV1 -5 782 5 2593 120 51 147 chr11 93222084 93222757 -57560796 + MER4E LTR ERV1 1 779 0 304 175 0 0 chr11 93223145 93223206 -57560347 + MIR SINE MIR 70 130 -78 229 172 31 0 chr11 93223564 93223628 -57559925 + GA-rich Low_complexity Low_complexity 2 67 0 267 305 133 0 chr11 93224010 93224138 -57559415 - L2 LINE L2 -52 3261 3117 302 284 98 20 chr11 93224778 93224880 -57558673 - L2 LINE L2 -43 3270 3161 1692 247 34 39 chr11 93224902 93225367 -57558186 - LTR16B LTR ERVL 0 464 2 701 310 45 17 chr11 93225368 93225655 -57557898 - L2 LINE L2 -183 3130 2836 1130 307 84 22 chr11 93225659 93226169 -57557384 - L2 LINE L2 0 3313 2776 1578 146 75 41 chr11 93226187 93226481 -57557072 + AluSx SINE Alu 1 304 -8 383 288 57 28 chr11 93226719 93226896 -57556657 - MIR3 SINE MIR -18 190 9 1448 109 10 0 chr11 93227327 93227519 -57556034 - AluSg/x SINE Alu -36 276 83 267 31 0 0 chr11 93227656 93227688 -57555865 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 572 224 0 14 chr11 93227691 93227834 -57555719 - L1MB8 LINE L1 -3 6175 6035 188 83 0 28 chr11 93227849 93227885 -57555668 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 6908 24 0 0 chr11 93227885 93228681 -57554872 - L1PA3 LINE L1 -24 6131 5336 416 231 8 97 chr11 93228921 93229055 -57554498 + L2 LINE L2 3178 3299 -14 192 188 50 125 chr11 93229479 93229559 -57553994 - MIR SINE MIR -73 189 116 579 282 53 0 chr11 93229641 93229811 -57553742 + MIR SINE MIR 67 245 -17 402 327 148 11 chr11 93229882 93230145 -57553408 + L2 LINE L2 3005 3303 -10 2022 122 38 0 chr11 93230200 93230488 -57553065 + AluSx SINE Alu 1 299 -13 306 164 0 0 chr11 93230843 93230898 -57552655 + T-rich Low_complexity Low_complexity 4 58 0 305 337 113 35 chr11 93231634 93231705 -57551848 - L2 LINE L2 0 3272 3208 2198 129 0 6 chr11 93231705 93232016 -57551537 + AluSx SINE Alu 1 309 -3 305 337 113 35 chr11 93232016 93232226 -57551327 - L2 LINE L2 -64 3208 2969 286 211 0 18 chr11 93232337 93232394 -57551159 - L2 LINE L2 -16 3297 3242 701 281 87 13 chr11 93232849 93233080 -57550473 + MIR SINE MIR 9 256 -6 1861 165 93 3 chr11 93233082 93233416 -57550137 - MLT1A1 LTR MaLR 0 365 2 297 301 184 0 chr11 93233600 93233736 -57549817 + MIR SINE MIR 91 251 -11 239 204 0 0 chr11 93234244 93234293 -57549260 + L1MEc LINE L1 1089 1137 -5259 * 2972 164 104 15 chr11 93234291 93235265 -57548288 + L1MB2 LINE L1 5024 6162 -9 643 236 95 10 chr11 93235315 93235628 -57547925 + L1MEc LINE L1 1670 2035 -4361 1642 199 57 83 chr11 93235636 93236108 -57547445 + MLT1C LTR MaLR 3 462 -5 5289 234 64 48 chr11 93236150 93236504 -57547049 + L1MEc LINE L1 2086 2433 -3782 1769 150 40 0 chr11 93236504 93236778 -57546775 + AluJo SINE Alu 1 285 -27 5289 234 64 48 chr11 93236778 93238235 -57545318 + L1MEc LINE L1 2433 3937 -2278 2905 163 33 0 chr11 93238235 93238714 -57544839 - LTR42 LTR ERVL 0 495 1 5289 234 64 48 chr11 93238714 93239019 -57544534 + L1MEc LINE L1 3937 4236 -1979 655 260 58 19 chr11 93239128 93239440 -57544113 - L1M4 LINE L1 -2737 3409 3086 677 327 72 28 chr11 93239690 93240121 -57543432 - L1ME LINE L1 -5618 452 3 206 292 194 14 chr11 93240243 93240315 -57543238 - L2 LINE L2 -688 2626 2542 216 267 87 80 chr11 93240779 93240929 -57542624 - L2 LINE L2 -851 2463 2313 2181 113 0 3 chr11 93241317 93241608 -57541945 + AluSx SINE Alu 3 292 -20 225 234 21 0 chr11 93242321 93242368 -57541185 - L2 LINE L2 -8 3264 3217 192 333 81 27 chr11 93242409 93242520 -57541033 - MIR SINE MIR -58 204 88 1219 91 0 0 chr11 93242923 93243077 -57540476 - AluSq SINE Alu -159 154 1 471 277 38 11 chr11 93243580 93243764 -57539789 - MER5A DNA MER1_type 0 189 1 356 321 35 93 chr11 93244668 93244958 -57538595 - L2 LINE L2 -86 3186 2914 226 281 44 44 chr11 93246022 93246136 -57537417 - L3 LINE CR1 -364 1213 1100 2603 42 0 7 chr11 93296189 93296495 -57487058 + AluY SINE Alu 1 304 -7 607 287 114 16 chr11 93296566 93296953 -57486600 + L1ME4a LINE L1 5512 5936 -185 1025 159 25 12 chr11 93297576 93297739 -57485814 - AluJo SINE Alu -19 293 129 27 73 0 0 chr11 93297772 93297827 -57485726 + AT_rich Low_complexity Low_complexity 1 55 0 274 295 181 0 chr11 93297886 93297991 -57485562 - L2 LINE L2 0 3272 3149 500 291 90 51 chr11 93298178 93298412 -57485141 - MIR SINE MIR -6 256 14 201 371 57 0 chr11 93298484 93298554 -57484999 - L2 LINE L2 -92 3180 3107 336 319 181 40 chr11 93298884 93299332 -57484221 - L2 LINE L2 -2108 1206 696 645 259 199 0 chr11 93299412 93299505 -57484048 - MIR SINE MIR -1 261 188 267 31 0 0 chr11 93299505 93299537 -57484016 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 645 259 199 0 chr11 93299537 93299659 -57483894 - MIR SINE MIR -74 188 3 239 295 89 27 chr11 93299714 93299826 -57483727 - L2 LINE L2 -2834 480 362 315 270 105 20 chr11 93300418 93300570 -57482983 + MLT1K LTR MaLR 144 308 -280 1924 158 0 10 chr11 93300907 93301199 -57482354 - AluJo SINE Alu -23 289 1 21 36 0 0 chr11 93301258 93301286 -57482267 + AT_rich Low_complexity Low_complexity 1 28 0 1899 107 0 8 chr11 93301677 93301938 -57481615 + AluSg SINE Alu 39 297 -13 22 35 0 0 chr11 93302260 93302289 -57481264 + AT_rich Low_complexity Low_complexity 1 29 0 326 301 48 63 chr11 93303634 93303840 -57479713 + L3 LINE CR1 1341 1543 -34 485 204 238 17 chr11 93303878 93304050 -57479503 + MIR SINE MIR 53 262 0 697 304 61 4 chr11 93304746 93304976 -57478577 + MIR SINE MIR 20 262 0 777 137 0 0 chr11 93305399 93305516 -57478037 - AluJo SINE Alu -189 123 7 1992 140 3 7 chr11 93306728 93307021 -57476532 - AluJb SINE Alu -20 292 1 292 365 65 77 chr11 93307181 93307534 -57476019 - L2 LINE L2 -2 3270 2922 1047 181 10 0 chr11 93308307 93308512 -57475041 + L1MB2 LINE L1 5949 6155 -16 2028 115 100 9 chr11 93309321 93309652 -57473901 - MER46B DNA MER2_type 0 236 1 183 250 114 0 chr11 93309812 93309856 -57473697 + MER5A DNA MER1_type 140 188 -1 564 211 94 50 chr11 93310259 93310374 -57473179 + MER5A DNA MER1_type 1 128 -61 1627 184 31 14 chr11 93310374 93310667 -57472886 - AluJb SINE Alu -14 298 1 564 211 94 50 chr11 93310667 93310731 -57472822 + MER5A DNA MER1_type 128 188 -1 810 256 92 43 chr11 93311198 93311885 -57471668 + L1MEc LINE L1 1072 1771 -4444 976 280 109 16 chr11 93311904 93312824 -57470729 + L1MEc LINE L1 1875 2841 -3374 597 145 65 16 chr11 93313597 93313721 -57469832 - L1MC1 LINE L1 0 6333 6204 25 0 0 0 chr11 93313729 93313754 -57469799 + AT_rich Low_complexity Low_complexity 1 25 0 303 269 100 31 chr11 93314337 93314467 -57469086 - MIR SINE MIR -2 260 122 306 319 179 34 chr11 93314493 93314984 -57468569 - L2 LINE L2 -56 3257 2676 2107 108 10 3 chr11 93315003 93315324 -57468229 - AluSq SINE Alu 0 313 1 353 328 46 8 chr11 93315325 93315456 -57468097 + MIR SINE MIR 79 214 -48 1881 104 31 86 chr11 93316011 93316160 -57467393 + AluSp SINE Alu 1 124 -189 234 0 0 0 chr11 93316160 93316186 -57467367 + (CA)n Simple_repeat Simple_repeat 1 26 0 1881 104 31 86 chr11 93316186 93316362 -57467191 + AluSp SINE Alu 124 308 -5 391 286 9 9 chr11 93316913 93317018 -57466535 + MIR3 SINE MIR 100 204 -4 2611 33 23 0 chr11 93317021 93317322 -57466231 - AluY SINE Alu -3 308 1 2353 105 0 0 chr11 93317863 93318167 -57465386 - AluSx SINE Alu -8 304 1 211 308 0 22 chr11 93318647 93318738 -57464815 + (TA)n Simple_repeat Simple_repeat 1 89 0 22 0 0 0 chr11 93319717 93319739 -57463814 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr11 93319939 93319975 -57463578 + AT_rich Low_complexity Low_complexity 1 36 0 300 53 0 0 chr11 93320874 93320912 -57462641 + (CA)n Simple_repeat Simple_repeat 2 39 0 1955 157 0 7 chr11 93320912 93321205 -57462348 - AluSx SINE Alu -21 291 1 489 326 163 5 chr11 93321513 93321728 -57461825 - MIR SINE MIR 0 262 14 644 276 84 22 chr11 93321736 93321961 -57461592 + MIR SINE MIR 20 258 -4 703 219 171 22 chr11 93321985 93322213 -57461340 + MIR SINE MIR 1 262 0 29 47 0 0 chr11 93323226 93323269 -57460284 + AT_rich Low_complexity Low_complexity 1 43 0 223 234 78 16 chr11 93323523 93323587 -57459966 + MIR SINE MIR 185 252 -10 375 23 0 0 chr11 93324880 93324924 -57458629 + (CA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chr11 93325436 93325458 -57458095 + AT_rich Low_complexity Low_complexity 1 22 0 436 289 35 61 chr11 93325970 93326167 -57457386 + MIR SINE MIR 1 146 -62 573 255 163 16 chr11 93327736 93327920 -57455633 + L3 LINE CR1 1364 1574 -3 598 226 105 21 chr11 93328543 93328733 -57454820 + MIR SINE MIR 53 258 -4 362 205 77 0 chr11 93329804 93329882 -57453671 + L2 LINE L2 3230 3313 0 2382 66 16 3 chr11 93330362 93330665 -57452888 - AluY SINE Alu -4 307 1 42 77 0 0 chr11 93330870 93330961 -57452592 + AT_rich Low_complexity Low_complexity 1 91 0 31 0 0 0 chr11 93331949 93331980 -57451573 + AT_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr11 93332048 93332079 -57451474 + AT_rich Low_complexity Low_complexity 1 31 0 2317 110 0 0 chr11 93336476 93336777 -57446776 - AluSg SINE Alu -9 301 1 21279 82 12 21 chr11 93337154 93340947 -57442606 + L1PA7 LINE L1 2358 6153 -1 2895 6 0 6 chr11 93341776 93342095 -57441458 - AluYb8 SINE Alu -1 317 1 1879 148 19 0 chr11 93343109 93343426 -57440127 + L1MC1 LINE L1 6011 6333 0 2000 144 0 10 chr11 93343671 93343983 -57439570 + AluSx SINE Alu 1 309 -3 193 266 24 81 chr11 93345001 93345125 -57438428 - MIR3 SINE MIR -5 203 87 267 200 143 43 chr11 93347324 93347394 -57436159 + L2 LINE L2 3195 3271 -1 189 0 0 0 chr11 93347450 93347471 -57436082 + (T)n Simple_repeat Simple_repeat 1 21 0 579 265 31 56 chr11 93347849 93348045 -57435508 - MIR SINE MIR -70 192 2 238 287 191 0 chr11 93349350 93349444 -57434109 + L2 LINE L2 3141 3252 -20 833 206 164 42 chr11 93350698 93350985 -57432568 + MER5C DNA MER1_type 3 324 0 201 193 325 0 chr11 93351734 93351817 -57431736 - MIR SINE MIR -71 191 82 379 339 16 38 chr11 93352390 93352576 -57430977 - MIR SINE MIR -12 250 69 466 323 115 9 chr11 93353233 93353459 -57430094 - MIR SINE MIR -12 250 1 200 299 26 26 chr11 93354345 93354422 -57429131 - L2 LINE L2 -6 3266 3190 446 264 195 0 chr11 93354614 93354773 -57428780 - MIR SINE MIR -2 260 71 187 261 77 85 chr11 93354879 93355009 -57428544 + MIR SINE MIR 117 245 -17 641 280 95 0 chr11 93355048 93355237 -57428316 + MIR SINE MIR 53 259 -3 766 174 0 15 chr11 93355371 93355503 -57428050 + FLAM_C SINE Alu 2 131 -2 356 259 7 70 chr11 93356952 93357095 -57426458 + MIR SINE MIR 108 241 -21 344 297 91 17 chr11 93358341 93358516 -57425037 + MIR SINE MIR 39 226 -36 550 293 39 102 chr11 93358550 93358885 -57424668 + L2 LINE L2 2959 3272 0 480 228 156 18 chr11 93360492 93360659 -57422894 - MIR3 SINE MIR -16 192 3 306 0 0 0 chr11 93361116 93361150 -57422403 + (A)n Simple_repeat Simple_repeat 1 34 0 260 314 126 11 chr11 93362038 93362213 -57421340 - MIR SINE MIR -14 248 54 189 0 0 0 chr11 93362339 93362360 -57421193 + (TAA)n Simple_repeat Simple_repeat 2 22 0 369 321 109 7 chr11 93365901 93366038 -57417515 + L2 LINE L2 3119 3269 -3 2372 120 0 0 chr11 93366090 93366399 -57417154 - AluSx SINE Alu -3 309 1 22 0 0 0 chr11 93366410 93366432 -57417121 + AT_rich Low_complexity Low_complexity 1 22 0 516 232 82 96 chr11 93366692 93367131 -57416422 - MER115 DNA AcHobo -260 433 1 302 314 50 14 chr11 93367366 93367506 -57416047 - MIR SINE MIR -71 191 47 477 248 8 8 chr11 93367528 93367649 -57415904 + MER45A DNA AcHobo 58 178 0 22 0 0 0 chr11 93368293 93368315 -57415238 + AT_rich Low_complexity Low_complexity 1 22 0 607 303 46 8 chr11 93368537 93368778 -57414775 - MLT1L LTR MaLR -359 256 7 789 246 115 52 chr11 93369253 93369732 -57413821 + L1MC4a LINE L1 5683 6191 -1617 380 264 74 8 chr11 93370215 93370336 -57413217 - L2 LINE L2 -3 3310 3182 192 191 11 90 chr11 93370678 93370767 -57412786 + L2 LINE L2 218 299 -3015 1126 255 98 115 chr11 93370933 93372387 -57411166 + L1MC4 LINE L1 6233 7710 -251 2319 114 0 3 chr11 93372387 93372695 -57410858 + AluSx SINE Alu 1 307 -5 1126 255 98 115 chr11 93372695 93372725 -57410828 + L1MC4 LINE L1 7710 7739 -222 1843 157 0 26 chr11 93372725 93373031 -57410522 + AluJb SINE Alu 4 301 -11 1126 255 98 115 chr11 93373031 93373214 -57410339 + L1MC4 LINE L1 7739 7899 -62 321 302 22 22 chr11 93373251 93373390 -57410163 - L2 LINE L2 -2778 536 398 22 0 0 0 chr11 93373584 93373606 -57409947 + AT_rich Low_complexity Low_complexity 1 22 0 14530 118 36 47 chr11 93373908 93376355 -57407198 + Tigger1 DNA MER2_type 1 2418 0 1228 220 127 16 chr11 93376756 93377079 -57406474 + MLT1F LTR MaLR 1 359 -183 8680 103 50 1 chr11 93377079 93378288 -57405265 + THE1B-int LTR MaLR 313 1580 0 2513 133 6 0 chr11 93378290 93378650 -57404903 + THE1B LTR MaLR 3 364 0 1018 238 4 17 chr11 93378651 93378886 -57404667 - MLT1B LTR MaLR -155 235 4 2472 72 7 0 chr11 93379063 93379368 -57404185 + AluY SINE Alu 1 307 -4 2244 97 0 4 chr11 93379560 93379871 -57403682 + AluSg SINE Alu 3 312 0 218 310 0 14 chr11 93379969 93380040 -57403513 + L2 LINE L2 3001 3070 -243 231 356 58 10 chr11 93380110 93380214 -57403339 + L2 LINE L2 3173 3281 -32 336 24 0 0 chr11 93380216 93380257 -57403296 + (TG)n Simple_repeat Simple_repeat 2 42 0 2902 13 0 0 chr11 93380613 93380924 -57402629 - AluY SINE Alu 0 311 1 261 312 92 22 chr11 93381340 93381654 -57401899 + L1M4 LINE L1 4577 4912 -1234 2012 128 10 39 chr11 93381665 93381971 -57401582 - AluSx SINE Alu -15 297 1 1116 114 0 7 chr11 93382282 93382431 -57401122 + AluSq SINE Alu 9 156 -157 842 108 0 0 chr11 93382459 93382570 -57400983 - FLAM_C SINE Alu -32 111 1 191 351 13 0 chr11 93382903 93382980 -57400573 - L2 LINE L2 0 3313 3236 2282 144 57 10 chr11 93383445 93383833 -57399720 - MER65A LTR ERV1 0 445 40 656 92 28 18 chr11 93383979 93384088 -57399465 - L1MA5A LINE L1 -2 6295 6186 611 244 50 10 chr11 93384117 93384318 -57399235 + L1MC4 LINE L1 7741 7949 -93 206 313 0 53 chr11 93385274 93385424 -57398129 + (CGG)n Simple_repeat Simple_repeat 1 142 0 315 0 0 0 chr11 93387175 93387210 -57396343 + (A)n Simple_repeat Simple_repeat 1 35 0 990 179 36 0 chr11 93387878 93388046 -57395507 + FRAM SINE Alu 1 169 -7 262 303 34 0 chr11 93388174 93388263 -57395290 + MER117 DNA MER1_type 67 158 -39 207 295 31 78 chr11 93388485 93388614 -57394939 + L2 LINE L2 3189 3311 -2 415 191 18 18 chr11 93388759 93388869 -57394684 - L1MA5A LINE L1 -2 6295 6186 386 253 65 45 chr11 93388899 93389053 -57394500 - MIR SINE MIR -65 197 41 404 248 116 23 chr11 93389134 93389263 -57394290 + MIR3 SINE MIR 4 144 -64 332 300 36 0 chr11 93390737 93390847 -57392706 + MIR SINE MIR 41 154 -108 201 240 7 7 chr11 93391193 93391266 -57392287 - MIR SINE MIR -111 97 25 24 67 0 0 chr11 93391466 93391511 -57392042 + AT_rich Low_complexity Low_complexity 1 45 0 2535 83 0 3 chr11 93393220 93393532 -57390021 + AluSx SINE Alu 1 311 -1 24 0 0 0 chr11 93393578 93393602 -57389951 + AT_rich Low_complexity Low_complexity 1 24 0 366 255 124 0 chr11 93393634 93393779 -57389774 + MIR SINE MIR 66 228 -34 240 276 71 10 chr11 93394042 93394140 -57389413 + L2 LINE L2 2955 3058 -214 485 254 49 75 chr11 93394229 93394592 -57388961 + MLT1I LTR MaLR 81 450 0 204 191 48 0 chr11 93394664 93394706 -57388847 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 908 273 113 55 chr11 93395280 93395798 -57387755 - L2 LINE L2 -2 3311 2763 245 207 26 138 chr11 93395867 93395926 -57387627 - MIR SINE MIR -52 210 169 1896 166 0 0 chr11 93395926 93396210 -57387343 - AluSx SINE Alu -28 284 1 245 207 26 138 chr11 93396210 93396266 -57387287 - MIR SINE MIR -93 169 108 424 269 166 30 chr11 93396640 93397035 -57386518 + L2 LINE L2 2636 3089 -183 183 380 43 0 chr11 93397312 93397404 -57386149 + MIR SINE MIR 50 145 -63 250 298 101 28 chr11 93398371 93398549 -57385004 - L3 LINE CR1 -259 1318 1128 318 302 153 11 chr11 93398556 93398745 -57384808 - MIR SINE MIR -31 231 16 384 259 0 0 chr11 93398779 93398860 -57384693 - MIR3 SINE MIR -116 92 12 2200 104 0 0 chr11 93399497 93399785 -57383768 - AluSg SINE Alu -21 289 2 181 156 0 0 chr11 93401071 93401103 -57382450 - L2 LINE L2 -210 3062 3031 263 350 10 19 chr11 93401222 93401325 -57382228 + MER5A DNA MER1_type 67 168 -21 200 329 0 0 chr11 93401445 93401521 -57382032 - MIR SINE MIR -74 134 59 468 245 0 112 chr11 93401913 93402101 -57381452 - MER5B DNA MER1_type -4 174 8 346 261 87 26 chr11 93402143 93402258 -57381295 - MER96 DNA MER1_type? -5 170 49 505 252 118 0 chr11 93402259 93402394 -57381159 + MER96 DNA MER1_type? 25 175 0 315 278 118 14 chr11 93402637 93402781 -57380772 + MIR SINE MIR 90 248 -14 2608 170 74 2 chr11 93403389 93403860 -57379693 + MLT1D LTR MaLR 1 505 0 1063 123 0 7 chr11 93403908 93404063 -57379490 - LTR32 LTR ERVL -1 470 317 2006 110 70 37 chr11 93404098 93404425 -57379128 - LTR32 LTR ERVL -119 352 15 212 430 13 0 chr11 93404887 93405036 -57378517 + L2 LINE L2 2915 3065 -248 381 228 59 30 chr11 93405168 93405269 -57378284 + MIR SINE MIR 84 187 -75 249 326 93 20 chr11 93405912 93406066 -57377487 + MIR3 SINE MIR 2 163 -66 30 27 0 0 chr11 93406130 93406167 -57377386 + AT_rich Low_complexity Low_complexity 1 37 0 1656 170 15 4 chr11 93406167 93406432 -57377121 - AluJb SINE Alu -24 288 21 342 246 85 54 chr11 93407332 93407462 -57376091 + MIR3 SINE MIR 67 200 -8 534 291 116 56 chr11 93407591 93407910 -57375643 + L2 LINE L2 2896 3233 -39 429 320 46 17 chr11 93408504 93408679 -57374874 - MIR SINE MIR -55 207 28 407 217 116 8 chr11 93409121 93409250 -57374303 + MIR3 SINE MIR 43 185 -23 217 225 0 0 chr11 93409468 93409508 -57374045 + polypyrimidine Low_complexity Low_complexity 4 43 0 384 274 40 24 chr11 93409699 93409734 -57373819 - MIR3 SINE MIR -23 185 152 1848 154 7 0 chr11 93409734 93410035 -57373518 - AluSx SINE Alu 0 303 1 384 274 40 24 chr11 93410035 93410122 -57373431 - MIR3 SINE MIR -56 152 60 2269 145 42 30 chr11 93410161 93410517 -57373036 + MSTB1 LTR MaLR 1 364 -68 4612 64 14 2 chr11 93410517 93411080 -57372473 - L1PA7 LINE L1 -6 6148 5579 2269 145 42 30 chr11 93411080 93411150 -57372403 + MSTB1 LTR MaLR 364 432 0 2286 103 6 0 chr11 93412067 93412378 -57371175 - AluSq SINE Alu 0 313 1 1735 172 0 28 chr11 93412952 93413271 -57370282 + AluJb SINE Alu 1 310 -2 310 325 24 8 chr11 93413612 93413738 -57369815 - MIR SINE MIR -38 224 97 525 319 5 37 chr11 93414137 93414325 -57369228 + MIR3 SINE MIR 19 200 -8 4351 178 79 19 chr11 93414524 93415321 -57368232 + MER21B LTR ERV1 1 845 -18 2990 90 0 11 chr11 93415321 93415700 -57367853 - THE1C LTR MaLR 0 375 1 11293 111 7 40 chr11 93415700 93417334 -57366219 - THE1C-int LTR MaLR 0 1580 1 3018 93 0 8 chr11 93417334 93417710 -57365843 - THE1C LTR MaLR 0 375 3 624 222 148 32 chr11 93417854 93418043 -57365510 - MIR SINE MIR -31 231 21 3341 158 76 8 chr11 93420215 93420835 -57362718 + L1MD2 LINE L1 5696 6357 -2 236 330 78 19 chr11 93421122 93421225 -57362328 + L2 LINE L2 3205 3313 0 264 251 159 25 chr11 93421415 93421578 -57361975 + MIR SINE MIR 66 250 -12 285 155 0 0 chr11 93421929 93421987 -57361566 + T-rich Low_complexity Low_complexity 1 58 0 400 322 27 0 chr11 93422512 93422658 -57360895 - MIR SINE MIR -11 251 102 23 33 0 0 chr11 93423015 93423045 -57360508 + AT_rich Low_complexity Low_complexity 1 30 0 192 40 0 0 chr11 93423357 93423382 -57360171 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 893 143 100 0 chr11 93423384 93423524 -57360029 - AluJo SINE Alu -26 286 133 575 150 0 9 chr11 93423541 93423654 -57359899 + (TA)n Simple_repeat Simple_repeat 1 112 0 839 178 0 0 chr11 93423654 93423789 -57359764 - AluJo SINE Alu -176 136 2 528 285 34 17 chr11 93423846 93424025 -57359528 - MIR SINE MIR 0 262 81 399 129 12 71 chr11 93424155 93424187 -57359366 + MER116 DNA Mariner 1 33 -47 1985 111 70 26 chr11 93424187 93424531 -57359022 - MER46B DNA MER2_type -2 234 1 399 129 12 71 chr11 93424531 93424583 -57358970 + MER116 DNA Mariner 33 80 0 354 259 32 95 chr11 93424594 93424752 -57358801 + MIR3 SINE MIR 37 184 -24 270 236 0 0 chr11 93424786 93424841 -57358712 - L2 LINE L2 0 3313 3259 2242 128 0 10 chr11 93425137 93425450 -57358103 + AluSx SINE Alu 1 310 -2 324 355 30 6 chr11 93425648 93425814 -57357739 + MIR3 SINE MIR 18 187 -21 6767 30 11 0 chr11 93426885 93427676 -57355877 - L1PA3 LINE L1 -3 6152 5353 21 0 0 0 chr11 93428136 93428157 -57355396 + AT_rich Low_complexity Low_complexity 1 21 0 969 137 0 0 chr11 93428293 93428424 -57355129 - AluJo SINE Alu -171 131 1 1729 183 7 7 chr11 93428433 93428733 -57354820 - AluJo SINE Alu -12 300 1 260 264 272 8 chr11 93429275 93429400 -57354153 + MIR SINE MIR 81 238 -24 240 241 0 0 chr11 93429692 93429746 -57353807 - L2 LINE L2 -3 3310 3257 537 335 50 9 chr11 93430380 93430598 -57352955 + MIR SINE MIR 20 246 -16 1294 142 14 24 chr11 93431174 93431385 -57352168 + AluJo SINE Alu 14 222 -90 353 311 59 15 chr11 93431415 93431550 -57352003 + MIR SINE MIR 76 216 -46 2241 122 3 0 chr11 93431600 93431911 -57351642 + AluSx SINE Alu 1 312 0 2080 114 3 21 chr11 93432090 93432414 -57351139 - AluSx SINE Alu 0 319 1 3104 175 48 11 chr11 93432764 93433306 -57350247 - MER68 LTR ERV1 0 562 1 224 316 221 33 chr11 93433820 93434155 -57349398 + L2 LINE L2 2874 3271 -1 1737 152 0 11 chr11 93434564 93434834 -57348719 - AluJo SINE Alu -45 267 1 2123 109 20 3 chr11 93436075 93436369 -57347184 - AluSg SINE Alu -11 299 1 1295 114 0 0 chr11 93436465 93436641 -57346912 - AluSg/x SINE Alu 0 310 135 314 133 0 0 chr11 93436641 93436686 -57346867 - Alu SINE Alu -263 45 1 205 222 125 0 chr11 93436692 93436764 -57346789 + L2 LINE L2 2974 3054 -218 238 111 42 42 chr11 93436875 93436947 -57346606 + GA-rich Low_complexity Low_complexity 4 75 0 565 294 95 5 chr11 93437968 93438179 -57345374 + MIR SINE MIR 20 249 -13 1095 201 13 46 chr11 93438660 93438899 -57344654 + MIR SINE MIR 24 254 -8 940 159 0 0 chr11 93439464 93439596 -57343957 + FLAM_C SINE Alu 1 132 -1 302 250 83 19 chr11 93440363 93440471 -57343082 - L2 LINE L2 0 3313 3199 22 0 0 0 chr11 93440818 93440840 -57342713 + AT_rich Low_complexity Low_complexity 1 22 0 394 331 83 0 chr11 93441045 93441202 -57342351 - MIR3 SINE MIR -7 201 32 355 268 17 60 chr11 93441714 93441878 -57341675 - MIR SINE MIR -64 144 40 2206 100 0 0 chr11 93442314 93442620 -57340933 - AluSg SINE Alu 0 306 1 207 67 0 0 chr11 93443390 93443420 -57340133 - L2 LINE L2 0 3313 3284 195 311 0 0 chr11 93443672 93443733 -57339820 + MIR SINE MIR 185 245 -17 668 244 122 5 chr11 93443788 93444001 -57339552 + MIR SINE MIR 11 248 -14 369 254 27 0 chr11 93445092 93445202 -57338351 - MIR3 SINE MIR -49 159 47 254 158 30 79 chr11 93445497 93445598 -57337955 + C-rich Low_complexity Low_complexity 5 100 0 216 289 63 34 chr11 93445828 93445947 -57337606 + MIR SINE MIR 93 226 -36 1914 135 3 23 chr11 93446073 93446377 -57337176 + AluSx SINE Alu 1 298 -14 524 272 68 12 chr11 93447522 93447684 -57335869 + MIR SINE MIR 87 257 -5 294 238 152 48 chr11 93447819 93447924 -57335629 + MIR SINE MIR 6 121 -141 348 127 0 0 chr11 93447944 93447999 -57335554 + (TTCC)n Simple_repeat Simple_repeat 1 55 0 1431 171 95 0 chr11 93447999 93448262 -57335291 - AluJb SINE Alu -24 288 1 275 302 158 0 chr11 93448263 93448402 -57335151 + MIR SINE MIR 97 257 -5 483 250 36 56 chr11 93449808 93450004 -57333549 - MIR SINE MIR -40 222 31 2198 124 0 9 chr11 93450136 93450451 -57333102 + AluSx SINE Alu 1 312 0 1254 173 8 14 chr11 93450622 93450882 -57332671 + L1MB3 LINE L1 5894 6141 -42 1940 149 0 19 chr11 93450882 93451190 -57332363 + AluJo SINE Alu 1 302 -10 275 271 193 14 chr11 93451438 93451578 -57331975 - MIR SINE MIR -18 244 80 1099 163 217 0 chr11 93451578 93451836 -57331717 + MER33 DNA MER1_type 1 314 -10 2156 138 3 0 chr11 93452152 93452457 -57331096 - AluSx SINE Alu -6 306 1 215 347 132 25 chr11 93452730 93452851 -57330702 + MIR3 SINE MIR 21 154 -54 411 73 0 0 chr11 93452911 93452966 -57330587 + (TCTA)n Simple_repeat Simple_repeat 1 55 0 958 175 0 7 chr11 93452970 93453124 -57330429 - AluJb SINE Alu -37 275 123 463 326 17 33 chr11 93453137 93453318 -57330235 + MIR3 SINE MIR 30 207 -1 389 220 239 48 chr11 93453547 93453815 -57329738 - MLT1H LTR MaLR 0 549 231 810 161 12 31 chr11 93454324 93454485 -57329068 + Charlie4 DNA MER1_type 74 231 -1730 746 174 13 13 chr11 93454511 93454666 -57328887 + Charlie4 DNA MER1_type 1807 1961 0 792 189 63 13 chr11 93454726 93454885 -57328668 + MER5A DNA MER1_type 22 188 -1 450 234 112 0 chr11 93455010 93455117 -57328436 + L1ME3 LINE L1 6038 6156 -6 489 253 13 45 chr11 93455184 93455338 -57328215 - L2 LINE L2 -1 3312 3164 611 212 71 24 chr11 93455390 93455560 -57327993 + MER104 DNA MER2_type 1 178 -2 426 247 31 0 chr11 93456316 93456413 -57327140 - MIR SINE MIR -68 194 95 488 258 40 0 chr11 93457385 93457509 -57326044 + L2 LINE L2 3185 3313 0 2472 0 0 0 chr11 93459399 93459660 -57323893 + AluYa5 SINE Alu 39 299 -12 417 298 62 25 chr11 93459980 93460141 -57323412 + MIR SINE MIR 21 187 -75 366 248 60 3 chr11 93460342 93460478 -57323075 + MER5A DNA MER1_type 9 189 0 251 333 61 12 chr11 93461622 93461787 -57321766 + L2 LINE L2 2815 2987 -285 223 207 146 49 chr11 93461852 93461934 -57321619 + L2 LINE L2 3183 3272 0 459 295 16 53 chr11 93462917 93463107 -57320446 - MIR SINE MIR -57 205 23 4834 116 57 4 chr11 93463339 93464083 -57319470 - L1PA16 LINE L1 -9 6157 5375 181 147 29 0 chr11 93464184 93464218 -57319335 - MIR3 SINE MIR -50 158 124 783 242 44 6 chr11 93464355 93464537 -57319016 - MER5A DNA MER1_type 0 189 1 892 306 44 28 chr11 93464814 93465203 -57318350 + LTR16C LTR ERVL 97 491 0 742 187 8 0 chr11 93465862 93465996 -57317557 + L1MA10 LINE L1 6171 6305 -29 356 234 0 0 chr11 93466105 93466182 -57317371 - L1MA10 LINE L1 -32 6302 6226 477 306 67 10 chr11 93466419 93466612 -57316941 - MIR SINE MIR 0 262 59 357 355 59 31 chr11 93466661 93466948 -57316605 - L2 LINE L2 -18 3295 3001 1783 159 0 17 chr11 93466975 93467446 -57316107 + AluJo SINE Alu 12 477 0 491 90 6 72 chr11 93467550 93467716 -57315837 + (TA)n Simple_repeat Simple_repeat 2 156 0 643 273 96 47 chr11 93467802 93467982 -57315571 + L1MEd LINE L1 465 635 -5484 2154 122 0 26 chr11 93467982 93468294 -57315259 - AluSx SINE Alu -8 304 1 643 273 96 47 chr11 93468294 93468457 -57315096 + L1MEd LINE L1 635 825 -5294 332 292 94 18 chr11 93468536 93468707 -57314846 - L1M4 LINE L1 -896 5250 5067 1652 171 99 60 chr11 93468739 93469005 -57314548 + MER47A DNA MER2_type 1 286 -2037 1854 184 7 0 chr11 93469005 93469315 -57314238 - AluJo SINE Alu 0 312 1 1652 171 99 60 chr11 93469315 93469400 -57314153 + MER47A DNA MER2_type 286 366 0 301 268 98 32 chr11 93469423 93469546 -57314007 - L1M4 LINE L1 -1163 4983 4853 1021 284 77 20 chr11 93469548 93469991 -57313562 - HAL1 LINE L1 -228 2279 1812 382 273 98 103 chr11 93469992 93470388 -57313165 - HAL1 LINE L1 -1773 734 341 213 159 23 0 chr11 93470736 93470780 -57312773 + (TAA)n Simple_repeat Simple_repeat 2 46 0 24 53 0 0 chr11 93470969 93471007 -57312546 + AT_rich Low_complexity Low_complexity 1 38 0 1173 186 126 83 chr11 93471423 93471795 -57311758 + MLT1B LTR MaLR 3 390 0 717 146 63 198 chr11 93472120 93472373 -57311180 - MER20 DNA MER1_type 0 219 1 2477 163 54 10 chr11 93472643 93473053 -57310500 - MSTA LTR MaLR 0 428 1 344 173 21 0 chr11 93473063 93473146 -57310407 - L1ME1 LINE L1 -44 6290 6043 656 227 39 0 chr11 93473165 93473293 -57310260 - FLAM_A SINE Alu 0 133 1 21 0 0 0 chr11 93473294 93473315 -57310238 + AT_rich Low_complexity Low_complexity 1 21 0 590 135 0 0 chr11 93473453 93473549 -57310004 - L1MA2 LINE L1 -158 6146 6051 301 81 32 0 chr11 93473673 93473735 -57309818 + L1MA1 LINE L1 5974 6037 -265 5311 107 10 7 chr11 93473740 93474689 -57308864 - L1MA2 LINE L1 -342 5960 5008 6781 78 25 5 chr11 93474719 93476097 -57307456 + L1PA13 LINE L1 4722 6161 -2 450 333 8 0 chr11 93476252 93476381 -57307172 - L2 LINE L2 -7 3265 3136 1051 276 97 39 chr11 93476465 93476897 -57306656 + LTR16C LTR ERVL 26 482 -9 205 301 86 21 chr11 93476936 93477029 -57306524 - L2 LINE L2 -493 2821 2723 255 196 0 0 chr11 93477144 93477190 -57306363 + L2 LINE L2 3251 3296 -17 2056 134 20 0 chr11 93477346 93477645 -57305908 + AluSx SINE Alu 1 305 -7 221 276 187 58 chr11 93477649 93477874 -57305679 - L2 LINE L2 -845 2469 2216 775 209 194 5 chr11 93477986 93478192 -57305361 - MIR SINE MIR -3 259 15 272 281 42 0 chr11 93478436 93478532 -57305021 - L1MB8 LINE L1 -215 5963 5864 366 343 44 67 chr11 93479134 93479449 -57304104 + L2 LINE L2 2807 3114 -158 797 213 43 18 chr11 93479537 93479701 -57303852 + MLT1F1 LTR MaLR 400 567 0 935 133 0 15 chr11 93479735 93479870 -57303683 + FLAM_C SINE Alu 1 133 0 2317 82 3 25 chr11 93479881 93480197 -57303356 + AluY SINE Alu 1 309 -2 1731 248 77 11 chr11 93480202 93480654 -57302899 - MLT1H1 LTR MaLR -51 504 23 2009 144 7 0 chr11 93480688 93480979 -57302574 - AluSq SINE Alu -18 295 3 2241 90 10 10 chr11 93480989 93481288 -57302265 - AluSx SINE Alu -13 299 1 435 226 7 44 chr11 93481296 93481312 -57302241 - L1MA10 LINE L1 -3 6331 6316 3405 206 107 29 chr11 93481312 93482201 -57301352 - L1ME1 LINE L1 -5 6161 5147 1611 193 3 40 chr11 93482201 93482523 -57301030 + AluJo SINE Alu 3 312 0 3405 206 107 29 chr11 93482523 93482919 -57300634 - L1ME1 LINE L1 -1019 5147 4783 10147 24 3 0 chr11 93483399 93484574 -57298979 - L1PA2 LINE L1 -847 5299 4121 8062 17 1 1 chr11 93484574 93485440 -57298113 + L1PA2 LINE L1 5275 6152 -3 10283 59 47 7 chr11 93486600 93487930 -57295623 + SVA Other Other 2 1384 -2 225 0 0 0 chr11 93488072 93488097 -57295456 + (TAAAAA)n Simple_repeat Simple_repeat 2 26 0 1423 173 69 0 chr11 93488116 93488376 -57295177 - AluSx SINE Alu -19 293 16 220 284 40 0 chr11 93488997 93489071 -57294482 - MIR3 SINE MIR -47 161 85 273 184 138 55 chr11 93489986 93490095 -57293458 - MIR SINE MIR -71 137 20 198 103 0 0 chr11 93490439 93490468 -57293085 + (A)n Simple_repeat Simple_repeat 1 29 0 241 200 0 0 chr11 93491208 93491253 -57292300 + L1 LINE L1 4376 4420 -1726 4322 158 68 18 chr11 93493422 93494262 -57289291 + L1PA16 LINE L1 4398 5370 -796 2175 103 0 44 chr11 93494262 93494581 -57288972 + AluY SINE Alu 1 305 -6 4322 158 68 18 chr11 93494581 93495226 -57288327 + L1PA16 LINE L1 5370 5981 -185 257 368 24 8 chr11 93495618 93495743 -57287810 - MIR3 SINE MIR -79 129 3 1657 166 48 10 chr11 93495982 93496277 -57287276 + AluJb SINE Alu 1 306 -6 22 35 0 0 chr11 93497421 93497450 -57286103 + AT_rich Low_complexity Low_complexity 1 29 0 673 293 43 19 chr11 93498163 93498371 -57285182 - MIR SINE MIR -26 236 24 272 314 33 50 chr11 93498364 93498485 -57285068 - L2 LINE L2 -1 3271 3153 * 2115 120 0 35 chr11 93499861 93500177 -57283376 + AluSx SINE Alu 1 305 -7 27 0 0 0 chr11 93500283 93500310 -57283243 + AT_rich Low_complexity Low_complexity 1 27 0 318 285 146 32 chr11 93500503 93500626 -57282927 - L2 LINE L2 0 3272 3136 1464 160 127 11 chr11 93500666 93500941 -57282612 + AluJb SINE Alu 6 312 0 1514 163 93 0 chr11 93501330 93501587 -57281966 - AluJo SINE Alu -31 281 1 1833 121 11 8 chr11 93502634 93502898 -57280655 - AluSg SINE Alu -17 293 29 909 172 83 6 chr11 93502898 93503067 -57280486 - AluJo SINE Alu -130 182 1 349 266 142 0 chr11 93503148 93503261 -57280292 + L2 LINE L2 3141 3269 -3 249 235 198 0 chr11 93503582 93503663 -57279890 + L1ME4a LINE L1 6002 6098 -23 510 167 0 10 chr11 93504359 93504455 -57279098 + MER53 DNA DNA 1 95 -94 634 188 0 0 chr11 93504820 93504921 -57278632 + FLAM_A SINE Alu 1 101 -41 345 280 57 76 chr11 93504948 93505140 -57278413 + L2 LINE L2 3053 3247 -66 1942 138 0 0 chr11 93505140 93505416 -57278137 + AluSx SINE Alu 1 276 -36 210 37 0 0 chr11 93505421 93505448 -57278105 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 345 280 57 76 chr11 93505448 93505513 -57278040 + L2 LINE L2 3251 3311 -2 386 311 123 20 chr11 93505826 93506027 -57277526 - MIR SINE MIR -6 256 37 1584 161 0 0 chr11 93506209 93506457 -57277096 - AluSx SINE Alu -13 299 52 2171 99 0 0 chr11 93506458 93506772 -57276781 + AluSx SINE Alu 1 314 0 455 115 0 0 chr11 93506775 93506836 -57276717 - AluSx SINE Alu -256 62 2 341 244 126 16 chr11 93508266 93508393 -57275160 + MIR SINE MIR 33 173 -89 294 298 88 0 chr11 93508937 93509051 -57274502 + L2 LINE L2 1834 1957 -1357 377 281 16 8 chr11 93509051 93509172 -57274381 + L2 LINE L2 2725 2846 -468 1967 185 89 19 chr11 93509178 93509663 -57273890 - LTR27 LTR ERV1 0 501 2 201 333 143 0 chr11 93509725 93509809 -57273744 + L2 LINE L2 2932 3027 -245 210 333 144 9 chr11 93509821 93509932 -57273621 + L2 LINE L2 3180 3305 -8 634 286 132 38 chr11 93510180 93510551 -57273002 + L2 LINE L2 1842 2247 -1067 636 226 23 1 chr11 93510577 93510752 -57272801 + L1MD3 LINE L1 7557 7949 -46 2024 154 7 0 chr11 93510754 93511060 -57272493 - AluSx SINE Alu -4 308 1 21 57 0 0 chr11 93511379 93511414 -57272139 + AT_rich Low_complexity Low_complexity 1 35 0 1905 146 3 7 chr11 93511443 93511731 -57271822 + AluJo SINE Alu 1 287 -25 23 68 0 0 chr11 93511734 93511778 -57271775 + AT_rich Low_complexity Low_complexity 1 44 0 2725 220 45 27 chr11 93511969 93512929 -57270624 - L1M1 LINE L1 -3974 3591 2615 283 100 0 60 chr11 93513250 93513300 -57270253 - Alu SINE Alu -255 47 1 403 372 76 16 chr11 93513480 93513730 -57269823 - L2 LINE L2 -823 2491 2227 386 327 102 18 chr11 93513669 93513895 -57269658 + L3 LINE CR1 1301 1545 -32 * 610 134 67 8 chr11 93514014 93514148 -57269405 + L1MC3 LINE L1 7638 7779 -6 213 247 14 68 chr11 93514195 93514268 -57269285 - L2 LINE L2 -545 2769 2701 217 127 127 0 chr11 93514268 93514339 -57269214 + (TTTAA)n Simple_repeat Simple_repeat 1 80 0 920 143 0 0 chr11 93514339 93514472 -57269081 - AluSg/x SINE Alu -24 286 154 322 333 56 12 chr11 93514473 93514635 -57268918 - L2 LINE L2 -601 2713 2545 365 98 0 0 chr11 93514709 93514770 -57268783 + Alu SINE Alu 1 61 -242 876 141 19 19 chr11 93514870 93515026 -57268527 + AluSq SINE Alu 110 265 -48 593 49 0 12 chr11 93515030 93515112 -57268441 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 1308 163 42 62 chr11 93515118 93515407 -57268146 + AluJb SINE Alu 1 283 -29 1174 169 5 0 chr11 93515416 93515605 -57267948 - AluJo SINE Alu -2 310 121 1535 182 3 81 chr11 93516415 93516750 -57266803 - AluJo SINE Alu -1 311 3 3023 192 130 12 chr11 93516764 93517639 -57265914 + L1ME1 LINE L1 5186 6161 -5 2163 92 10 10 chr11 93517663 93517955 -57265598 + AluSx SINE Alu 1 292 -20 1052 226 181 19 chr11 93517993 93518475 -57265078 - LTR50 LTR ERVL -144 651 92 3969 182 32 27 chr11 93518966 93520306 -57263247 - L1MD1 LINE L1 0 6242 4850 775 73 35 1 chr11 93520307 93520432 -57263121 + L1M4 LINE L1 5332 5450 -728 236 143 0 0 chr11 93520426 93520468 -57263085 + L1M4 LINE L1 2458 2499 -3647 * 2167 107 17 0 chr11 93520491 93520782 -57262771 - AluSq SINE Alu -17 296 1 1199 207 25 31 chr11 93520783 93521136 -57262417 - L1MD1 LINE L1 -1306 4840 4490 1120 158 54 20 chr11 93521137 93521340 -57262213 - AluJb SINE Alu 0 312 103 474 217 188 0 chr11 93521485 93521623 -57261930 + MER5A DNA MER1_type 26 189 0 321 164 15 15 chr11 93521646 93521713 -57261840 - MLT1K LTR MaLR -4 584 518 2220 108 3 14 chr11 93522079 93522376 -57261177 + AluSx SINE Alu 1 294 -18 469 252 45 0 chr11 93522469 93522580 -57260973 - L2 LINE L2 -1 3271 3156 1769 162 35 0 chr11 93523789 93524079 -57259474 + AluJo SINE Alu 1 300 -12 616 165 9 18 chr11 93525067 93525176 -57258377 - AluJ SINE Alu -202 110 3 24 0 0 0 chr11 93525244 93525268 -57258285 + AT_rich Low_complexity Low_complexity 1 24 0 719 190 0 0 chr11 93525268 93525384 -57258169 - AluJb SINE Alu -196 116 1 2057 148 0 0 chr11 93525388 93525686 -57257867 - AluSx SINE Alu -14 298 1 227 232 32 63 chr11 93525779 93525874 -57257679 - HAL1 LINE L1 -1594 913 822 28 0 0 0 chr11 93526533 93526561 -57256992 + AT_rich Low_complexity Low_complexity 1 28 0 238 351 138 50 chr11 93526695 93527014 -57256539 - L2 LINE L2 0 3272 2926 271 200 18 0 chr11 93527017 93527072 -57256481 + MER20 DNA MER1_type 149 204 -15 2193 112 3 3 chr11 93528299 93528595 -57254958 - AluSx SINE Alu -16 296 1 626 253 22 22 chr11 93528822 93529000 -57254553 + MER5B DNA MER1_type 1 178 0 469 267 173 16 chr11 93529100 93529291 -57254262 + MIR SINE MIR 4 224 -38 22 80 0 0 chr11 93529858 93529908 -57253645 + AT_rich Low_complexity Low_complexity 1 50 0 646 192 23 0 chr11 93529916 93530046 -57253507 - MER46A DNA MER2_type -81 155 23 207 0 0 0 chr11 93530046 93530069 -57253484 + (T)n Simple_repeat Simple_repeat 1 23 0 197 314 39 69 chr11 93530960 93531062 -57252491 + MIR3 SINE MIR 98 196 -12 * 510 284 77 6 chr11 93531054 93531223 -57252330 - MIR SINE MIR -56 206 26 201 294 39 98 chr11 93532522 93532624 -57250929 - L2 LINE L2 -45 3227 3132 2027 153 0 6 chr11 93532829 93533155 -57250398 + MER1A DNA MER1_type 1 324 -205 326 349 19 0 chr11 93533158 93533264 -57250289 + L2 LINE L2 3206 3313 0 1320 86 25 10 chr11 93533307 93533505 -57250048 + MER1A DNA MER1_type 328 528 -1 700 290 162 17 chr11 93533787 93534077 -57249476 + L2 LINE L2 2982 3313 0 216 270 0 16 chr11 93534161 93534224 -57249329 + MIR3 SINE MIR 143 204 -4 213 39 0 0 chr11 93534572 93534598 -57248955 + (T)n Simple_repeat Simple_repeat 1 26 0 718 284 22 6 chr11 93534909 93535092 -57248461 + MIR SINE MIR 19 204 -58 1145 157 0 0 chr11 93535127 93535293 -57248260 - AluJb SINE Alu -14 298 133 538 136 164 0 chr11 93535338 93535448 -57248105 - MER46A DNA MER2_type -3 233 106 817 181 145 16 chr11 93535455 93535648 -57247905 + AluJo SINE Alu 1 218 -94 919 200 0 0 chr11 93535748 93535929 -57247624 + AluJb SINE Alu 129 309 0 625 249 161 67 chr11 93535966 93536084 -57247469 + HAL1 LINE L1 1155 1261 -1246 1867 146 27 7 chr11 93536084 93536378 -57247175 + AluJo SINE Alu 9 308 -4 625 249 161 67 chr11 93536378 93536844 -57246709 + HAL1 LINE L1 1261 1877 -630 229 308 110 39 chr11 93536848 93537030 -57246523 + L2 LINE L2 2266 2460 -854 448 156 10 214 chr11 93537084 93537276 -57246277 + MER8 DNA MER2_type 39 191 -48 1898 144 23 7 chr11 93537279 93537578 -57245975 + AluSx SINE Alu 1 304 -8 23 0 0 0 chr11 93537604 93537627 -57245926 + AT_rich Low_complexity Low_complexity 1 23 0 223 363 78 69 chr11 93537739 93537943 -57245610 + L2 LINE L2 3066 3271 -1 2337 112 3 0 chr11 93538449 93538761 -57244792 + AluSp SINE Alu 1 313 0 201 189 0 57 chr11 93540844 93540897 -57242656 + L2 LINE L2 3163 3212 -101 205 224 35 94 chr11 93542127 93542212 -57241341 + L2 LINE L2 2574 2653 -661 * 460 314 34 97 chr11 93542198 93542306 -57241247 + L2 LINE L2 2909 3022 -250 2335 116 27 14 chr11 93542306 93542676 -57240877 - THE1C LTR MaLR 0 375 1 460 314 34 97 chr11 93542676 93542949 -57240604 + L2 LINE L2 3022 3266 -6 1369 269 69 51 chr11 93544024 93544396 -57239157 - MLT1F LTR MaLR -6 536 200 1984 147 14 0 chr11 93544396 93544870 -57238683 + AluSx SINE Alu 9 486 0 1369 269 69 51 chr11 93544870 93545064 -57238489 - MLT1F LTR MaLR -342 200 11 291 325 12 12 chr11 93545900 93545980 -57237573 + L2 LINE L2 3184 3263 -9 3067 74 56 11 chr11 93546140 93546585 -57236968 - MER4C LTR ERV1 0 465 1 2544 119 11 6 chr11 93547521 93547883 -57235670 - THE1B LTR MaLR 0 364 1 988 155 0 0 chr11 93548384 93548532 -57235021 - AluJo/FRAM SINE Alu -24 288 141 249 146 42 0 chr11 93548532 93548580 -57234973 - Alu SINE Alu -252 50 1 4692 111 11 14 chr11 93548701 93548765 -57234788 - LTR8 LTR ERV1 0 691 628 2342 68 0 47 chr11 93548765 93549087 -57234466 + AluY SINE Alu 1 307 -4 4692 111 11 14 chr11 93549087 93549715 -57233838 - LTR8 LTR ERV1 -63 628 1 1585 186 10 74 chr11 93549723 93550035 -57233518 - AluJb SINE Alu -20 292 1 471 299 99 43 chr11 93550038 93550362 -57233191 + L2 LINE L2 326 667 -2647 1482 248 80 11 chr11 93550435 93550688 -57232865 + LTR33 LTR ERVL 13 247 -274 2007 147 35 6 chr11 93550688 93551036 -57232517 + MER46B DNA MER2_type 2 234 -2 1482 248 80 11 chr11 93551036 93551245 -57232308 + LTR33 LTR ERVL 247 507 -14 365 281 50 55 chr11 93551246 93551445 -57232108 - L2 LINE L2 -1054 2260 2063 337 241 9 9 chr11 93551773 93551889 -57231664 + L1MEc LINE L1 827 942 -5454 12053 79 17 5 chr11 93551890 93553558 -57229995 + L1P3 LINE L1 1 1688 -4773 1786 156 3 14 chr11 93553849 93554131 -57229422 + AluJo SINE Alu 15 293 -19 214 263 242 0 chr11 93554174 93554273 -57229280 - L2 LINE L2 -2 3311 3189 727 297 95 0 chr11 93554379 93554611 -57228942 + MIR SINE MIR 8 261 -1 800 233 36 43 chr11 93554696 93554949 -57228604 - MIR SINE MIR -11 251 1 22 0 0 54 chr11 93554956 93554972 -57228581 + AT_rich Low_complexity Low_complexity 1 16 -19 1884 160 11 0 chr11 93554972 93555259 -57228294 + AluSx SINE Alu 1 290 -22 22 0 0 54 chr11 93555259 93555279 -57228274 + AT_rich Low_complexity Low_complexity 16 35 0 2366 235 55 79 chr11 93555343 93555430 -57228123 + Zaphod DNA AcHobo 2 90 -3941 2311 67 0 3 chr11 93555430 93555739 -57227814 - AluY SINE Alu 0 308 1 2366 235 55 79 chr11 93555739 93556101 -57227452 + Zaphod DNA AcHobo 90 459 -3572 1859 136 47 10 chr11 93556101 93556402 -57227151 - AluSx SINE Alu 0 312 1 2366 235 55 79 chr11 93556402 93556813 -57226740 + Zaphod DNA AcHobo 459 835 -3196 598 183 0 0 chr11 93556813 93556917 -57226636 - U13 snRNA snRNA 0 104 1 2366 235 55 79 chr11 93556917 93557152 -57226401 + Zaphod DNA AcHobo 835 1074 -2957 492 224 14 61 chr11 93557153 93557300 -57226253 + Zaphod DNA AcHobo 3891 4030 -1 26 0 0 0 chr11 93557361 93557387 -57226166 + AT_rich Low_complexity Low_complexity 1 26 0 2219 100 0 0 chr11 93558069 93558370 -57225183 - AluSx SINE Alu 0 312 12 822 241 80 9 chr11 93558459 93558683 -57224870 + MIR SINE MIR 2 241 -21 2132 149 3 0 chr11 93559119 93559427 -57224126 - AluJo SINE Alu -2 310 2 488 275 131 64 chr11 93559491 93559895 -57223658 - MLT1J LTR MaLR -10 501 71 229 255 293 19 chr11 93561684 93561790 -57221763 - MIR3 SINE MIR -70 138 4 250 286 179 27 chr11 93562148 93562260 -57221293 + L2 LINE L2 3142 3270 -2 2671 156 34 10 chr11 93562447 93562863 -57220690 + MSTB LTR MaLR 1 426 0 1500 247 81 6 chr11 93562944 93563276 -57220277 - LTR18A LTR ERVL 0 357 1 10071 139 28 32 chr11 93563277 93564912 -57218641 - HERVL18 LTR ERVL 0 6047 4421 2132 110 14 0 chr11 93565243 93565525 -57218028 - AluSx SINE Alu -21 291 6 469 301 80 0 chr11 93566665 93566864 -57216689 - L1M4 LINE L1 -1981 4165 3951 1589 146 41 4 chr11 93566865 93567133 -57216420 + AluJb SINE Alu 1 278 -34 2243 57 3 57 chr11 93567161 93567461 -57216092 + AluY SINE Alu 1 284 -27 318 176 0 0 chr11 93567461 93567546 -57216007 + (CA)n Simple_repeat Simple_repeat 1 85 0 183 23 10 0 chr11 93567570 93567637 -57215916 + (CA)n Simple_repeat Simple_repeat 2 25 0 235 262 0 19 chr11 93567658 93567765 -57215788 + (CA)n Simple_repeat Simple_repeat 1 105 0 198 0 0 0 chr11 93567786 93567808 -57215745 + (CA)n Simple_repeat Simple_repeat 2 23 0 739 174 45 13 chr11 93568012 93568167 -57215386 + L1MC1 LINE L1 368 527 -5899 805 235 46 32 chr11 93568176 93568393 -57215160 - MER21B LTR ERV1 -82 781 562 662 89 0 0 chr11 93568395 93568548 -57215005 + AluSg/x SINE Alu 204 356 0 1671 225 85 92 chr11 93568548 93569122 -57214431 - MER21B LTR ERV1 -293 570 1 11448 177 40 34 chr11 93569147 93570184 -57213369 + L1MC1 LINE L1 529 1559 -5054 2334 116 0 7 chr11 93570184 93570494 -57213059 + AluSx SINE Alu 1 308 -4 11448 177 40 34 chr11 93570494 93571169 -57212384 + L1MC1 LINE L1 1559 2229 -4384 1944 145 7 13 chr11 93571169 93571479 -57212074 + AluSx SINE Alu 1 308 -4 11448 177 40 34 chr11 93571479 93572668 -57210885 + L1MC1 LINE L1 2229 3410 -3203 2158 109 0 0 chr11 93572668 93572974 -57210579 + AluSg SINE Alu 1 306 0 11448 177 40 34 chr11 93572974 93574578 -57208975 + L1MC1 LINE L1 3410 5004 -1609 1823 188 54 17 chr11 93574578 93574930 -57208623 - MLT1A1 LTR MaLR 0 365 1 11448 177 40 34 chr11 93574930 93575085 -57208468 + L1MC1 LINE L1 5004 5157 -1456 2174 140 0 0 chr11 93575085 93575393 -57208160 + AluJb SINE Alu 1 308 -4 11448 177 40 34 chr11 93575393 93575907 -57207646 + L1MC1 LINE L1 5157 5667 -946 2107 112 23 3 chr11 93575907 93576210 -57207343 + AluSx SINE Alu 1 309 -3 11448 177 40 34 chr11 93576210 93576895 -57206658 + L1MC1 LINE L1 5667 6613 0 671 267 20 71 chr11 93577576 93577872 -57205681 + L2 LINE L2 2420 2700 -614 1025 211 114 82 chr11 93577894 93578296 -57205257 - MLT1D LTR MaLR 0 505 91 1262 134 0 0 chr11 93578312 93578491 -57205062 - AluSg/x SINE Alu 0 310 132 2287 116 3 0 chr11 93578491 93578801 -57204752 - AluSx SINE Alu -1 311 1 291 205 48 72 chr11 93578809 93578892 -57204661 - MLT1D LTR MaLR -422 83 3 * 586 234 46 121 chr11 93578892 93579084 -57204469 - MER110 LTR ERV1 -12 563 318 615 287 62 62 chr11 93579403 93579755 -57203798 - MER21B-int LTR ERV1 -1 6683 4411 254 342 0 0 chr11 93580047 93580126 -57203427 + L2 LINE L2 3184 3262 -10 200 285 211 16 chr11 93580145 93580268 -57203285 - MIR SINE MIR -28 234 88 359 21 21 0 chr11 93580552 93580600 -57202953 + (TG)n Simple_repeat Simple_repeat 2 50 0 1614 196 0 4 chr11 93580600 93580880 -57202673 - AluJo SINE Alu -28 284 6 457 311 8 15 chr11 93581237 93581369 -57202184 + MIR SINE MIR 19 149 -113 1208 253 124 26 chr11 93581375 93581432 -57202121 - MLT1J2 LTR MaLR 0 450 400 2165 111 0 3 chr11 93581432 93581730 -57201823 - AluSx SINE Alu -14 298 2 1208 253 124 26 chr11 93581730 93582060 -57201493 - MLT1J2 LTR MaLR -50 400 25 223 233 151 0 chr11 93582076 93582162 -57201391 + MIR SINE MIR 164 262 0 1983 176 26 6 chr11 93582219 93582559 -57200994 - MER7A DNA MER2_type 0 346 2 385 308 21 49 chr11 93582873 93583016 -57200537 + L2 LINE L2 3171 3309 -4 256 254 17 0 chr11 93583088 93583147 -57200406 + MIR SINE MIR 53 112 -150 2394 77 7 0 chr11 93583154 93583452 -57200101 + AluY SINE Alu 1 300 -11 189 220 102 51 chr11 93583786 93583845 -57199708 + L2 LINE L2 3252 3313 0 934 195 0 0 chr11 93583906 93584065 -57199488 - FRAM SINE Alu -16 160 2 519 309 133 51 chr11 93584710 93585199 -57198354 - L2 LINE L2 -493 2821 2293 232 152 15 45 chr11 93586956 93587022 -57196531 + (CCCCG)n Simple_repeat Simple_repeat 3 66 0 224 311 0 0 chr11 93587182 93587243 -57196310 + G-rich Low_complexity Low_complexity 6 66 0 27 49 0 0 chr11 93587751 93587792 -57195761 + GC_rich Low_complexity Low_complexity 1 41 0 2312 75 10 7 chr11 93590934 93591226 -57192327 - AluSc SINE Alu -16 293 1 21 71 0 0 chr11 93591229 93591271 -57192282 + AT_rich Low_complexity Low_complexity 1 42 0 1645 147 24 34 chr11 93591305 93591598 -57191955 - AluJb SINE Alu -22 290 1 1541 181 59 28 chr11 93591721 93592008 -57191545 - AluJb SINE Alu -2 300 5 22 0 0 0 chr11 93592724 93592746 -57190807 + AT_rich Low_complexity Low_complexity 1 22 0 4952 148 43 23 chr11 93593765 93593855 -57189698 - L1MC1 LINE L1 -119 6214 6127 2389 74 0 7 chr11 93593855 93594153 -57189400 - AluSq SINE Alu -17 296 1 4952 148 43 23 chr11 93594153 93595026 -57188527 - L1MC1 LINE L1 -206 6127 5232 240 35 0 0 chr11 93595027 93595056 -57188497 + (T)n Simple_repeat Simple_repeat 1 29 0 8985 96 3 13 chr11 93595216 93596500 -57187053 + L1PA7 LINE L1 1908 3178 -2968 1324 100 0 0 chr11 93596500 93596670 -57186883 + AluSc SINE Alu 120 289 -20 16426 88 10 47 chr11 93596670 93599629 -57183924 + L1PA7 LINE L1 3179 6110 -44 3437 184 19 3 chr11 93599629 93600200 -57183353 - LTR22 LTR ERVK 0 580 1 16426 88 10 47 chr11 93600200 93600244 -57183309 + L1PA7 LINE L1 6110 6154 0 449 260 68 82 chr11 93600246 93600685 -57182868 + L1MEc LINE L1 935 1367 -5029 4188 147 30 9 chr11 93600713 93601285 -57182268 - MER50 LTR ERV1 -23 711 119 1898 137 0 7 chr11 93601285 93601607 -57181946 - AluSx SINE Alu 0 320 1 4188 147 30 9 chr11 93601607 93601729 -57181824 - MER50 LTR ERV1 -615 119 1 839 210 29 39 chr11 93601729 93601983 -57181570 + L1MC3 LINE L1 6137 6334 -10 1186 199 38 31 chr11 93602034 93602295 -57181258 + AluJb SINE Alu 33 295 -17 1200 256 131 39 chr11 93602297 93602792 -57180761 + L1MEc LINE L1 2362 2945 -3270 2301 98 3 0 chr11 93602792 93603097 -57180456 - AluSx SINE Alu -6 306 1 1200 256 131 39 chr11 93603097 93603320 -57180233 + L1MEc LINE L1 2945 3146 -3069 331 167 0 0 chr11 93603321 93603375 -57180178 - MER4A LTR ERV1 0 664 611 1724 111 13 30 chr11 93604934 93605249 -57178304 - MER4A LTR ERV1 -34 630 263 645 93 21 10 chr11 93605249 93605346 -57178207 - MER4A LTR ERV1 -566 98 1 369 162 81 14 chr11 93605404 93605478 -57178075 - MER21A LTR ERV1 0 931 853 24 0 0 0 chr11 93605479 93605503 -57178050 + AT_rich Low_complexity Low_complexity 1 24 0 1074 131 17 28 chr11 93605504 93605680 -57177873 - MER21A LTR ERV1 -47 884 711 778 155 47 27 chr11 93605681 93605829 -57177724 - MER21A LTR ERV1 -718 213 63 226 121 362 0 chr11 93605861 93605919 -57177634 - MER21A LTR ERV1 -852 79 1 296 176 0 0 chr11 93605919 93605987 -57177566 + L1MEc LINE L1 3210 3277 -2938 2353 165 59 159 chr11 93606001 93606090 -57177463 - LTR8A LTR ERV1 -5 722 626 2293 121 0 0 chr11 93606090 93606395 -57177158 + AluSx SINE Alu 1 305 -7 2353 165 59 159 chr11 93606395 93607106 -57176447 - LTR8A LTR ERV1 -101 626 2 1342 166 9 18 chr11 93607106 93607329 -57176224 + AluJo SINE Alu 76 296 -16 1837 161 6 19 chr11 93607331 93607647 -57175906 + AluJo SINE Alu 1 312 0 1775 215 63 98 chr11 93607671 93608358 -57175195 + L1ME3A LINE L1 5494 6156 -14 204 82 41 82 chr11 93608552 93608601 -57174952 - L2 LINE L2 -2071 1243 1197 7164 88 10 3 chr11 93608708 93609700 -57173853 + L1P LINE L1 4079 5077 -1069 15811 138 4 6 chr11 93609700 93612450 -57171103 + HERVL18 LTR ERVL 837 3580 -2467 9737 139 25 31 chr11 93612451 93614116 -57169437 + HERVL18 LTR ERVL 4394 6047 0 1369 247 81 6 chr11 93614117 93614449 -57169104 + LTR18A LTR ERVL 1 357 0 2481 156 34 10 chr11 93614530 93614946 -57168607 - MSTB LTR MaLR 0 426 1 255 286 179 27 chr11 93615133 93615245 -57168308 - L2 LINE L2 -2 3270 3142 227 255 293 19 chr11 93615603 93615709 -57167844 + MIR3 SINE MIR 4 138 -70 389 280 131 64 chr11 93617497 93617901 -57165652 + MLT1J LTR MaLR 71 501 -10 2132 149 3 0 chr11 93617965 93618273 -57165280 + AluJo SINE Alu 2 310 -2 822 241 80 9 chr11 93618709 93618933 -57164620 - MIR SINE MIR -21 241 2 519 168 56 99 chr11 93618977 93619012 -57164541 - MIR SINE MIR -44 218 183 2122 121 7 10 chr11 93619012 93619319 -57164234 + AluSx SINE Alu 1 306 -6 519 168 56 99 chr11 93619319 93619444 -57164109 - MIR SINE MIR -79 183 65 678 257 221 27 chr11 93619748 93620306 -57163247 + L2 LINE L2 2655 3312 -1 207 303 294 13 chr11 93620474 93620702 -57162851 + L2 LINE L2 1912 2203 -1111 7460 30 9 0 chr11 93620720 93621928 -57161625 - L1PA4 LINE L1 -3 6152 4942 254 200 18 0 chr11 93621947 93622002 -57161551 - L1ME LINE L1 -473 5648 5593 777 121 185 13 chr11 93622892 93623049 -57160504 + MSTB LTR MaLR 242 425 -1 1719 127 108 0 chr11 93623425 93623693 -57159860 + AluSx SINE Alu 1 297 -15 1267 160 90 59 chr11 93623704 93623992 -57159561 - AluJb SINE Alu -15 297 1 1704 169 32 7 chr11 93625342 93625626 -57157927 - AluJb SINE Alu -21 291 1 22 0 0 0 chr11 93627246 93627268 -57156285 + AT_rich Low_complexity Low_complexity 1 22 0 407 176 0 0 chr11 93627979 93628053 -57155500 - AluJ/FRAM SINE Alu -12 300 227 2132 89 7 17 chr11 93628054 93628347 -57155206 + AluSx SINE Alu 1 290 -22 720 183 0 63 chr11 93628352 93628494 -57155059 - FLAM_C SINE Alu 0 133 1 2427 86 0 16 chr11 93629337 93629652 -57153901 - AluSx SINE Alu -2 310 1 911 258 76 60 chr11 93631527 93631946 -57151607 - L2 LINE L2 -36 3277 2852 263 186 29 29 chr11 93631973 93632043 -57151510 + (CATATA)n Simple_repeat Simple_repeat 4 73 0 1951 136 0 14 chr11 93632678 93632973 -57150580 - AluSx SINE Alu -21 291 1 1839 171 0 10 chr11 93634176 93634480 -57149073 - AluJo SINE Alu -11 301 1 553 160 77 124 chr11 93636080 93636174 -57147379 + MER20 DNA MER1_type 56 140 -79 2085 122 3 16 chr11 93636174 93636485 -57147068 + AluSx SINE Alu 1 307 -5 553 160 77 124 chr11 93636485 93636559 -57146994 + MER20 DNA MER1_type 140 216 -3 198 151 131 0 chr11 93636653 93636710 -57146843 + MIR SINE MIR 71 144 -64 1286 144 56 128 chr11 93637491 93637811 -57145742 + AluJo SINE Alu 1 297 -15 356 324 91 32 chr11 93637976 93638229 -57145324 + L1ME LINE L1 5555 5822 -348 932 239 75 18 chr11 93639221 93639447 -57144106 + MIR SINE MIR 3 241 -21 2354 105 0 0 chr11 93639453 93639758 -57143795 + AluSx SINE Alu 1 305 -7 2308 93 0 0 chr11 93639892 93640192 -57143361 - AluSc SINE Alu -9 300 1 198 247 0 82 chr11 93640378 93640451 -57143102 - L2 LINE L2 -217 3055 2989 266 143 0 0 chr11 93641131 93641180 -57142373 - AluJo SINE Alu -6 296 248 1682 135 28 28 chr11 93641184 93641466 -57142087 - AluJo SINE Alu -30 282 1 311 230 160 30 chr11 93641901 93642001 -57141552 + L2 LINE L2 3200 3312 -1 198 0 0 0 chr11 93642814 93642836 -57140717 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 3680 157 49 40 chr11 93643121 93643974 -57139579 - L1MB7 LINE L1 -8 6176 5316 1231 226 4 12 chr11 93643997 93644245 -57139308 - AluJo SINE Alu -66 246 1 3214 218 20 20 chr11 93644246 93645124 -57138429 - L1MB7 LINE L1 -816 5330 4453 2181 133 0 0 chr11 93646403 93646705 -57136848 - AluSx SINE Alu -10 302 1 311 319 124 43 chr11 93646749 93646934 -57136619 - L1MC/D LINE L1 -2057 5751 5552 191 292 42 52 chr11 93647142 93647238 -57136315 + MIR SINE MIR 11 105 -157 784 201 24 75 chr11 93647269 93647523 -57136030 - L1MC4 LINE L1 -3 8039 7799 471 219 142 47 chr11 93647644 93647813 -57135740 + MIR SINE MIR 66 250 -12 1801 124 0 33 chr11 93648073 93648379 -57135174 - AluSg SINE Alu -14 296 1 908 350 137 10 chr11 93648517 93649202 -57134351 - L2 LINE L2 -1975 1339 568 439 252 36 0 chr11 93651136 93651247 -57132306 + L2 LINE L2 3191 3305 -8 1140 163 68 16 chr11 93651302 93651553 -57132000 + MER58B DNA MER1_type 78 341 0 426 330 115 32 chr11 93651814 93651972 -57131581 - L1ME LINE L1 -427 5694 5551 1785 153 0 47 chr11 93651972 93652292 -57131261 - AluJo SINE Alu 0 312 8 426 330 115 32 chr11 93652292 93652481 -57131072 - L1ME LINE L1 -570 5551 5318 22 0 0 0 chr11 93652724 93652746 -57130807 + AT_rich Low_complexity Low_complexity 1 22 0 999 79 0 0 chr11 93653346 93653473 -57130080 + AluSp/q SINE Alu 179 305 -8 228 143 0 0 chr11 93653475 93653517 -57130036 + L1MB4 LINE L1 6139 6180 0 2084 123 16 7 chr11 93654697 93655005 -57128548 + AluSx SINE Alu 1 311 -1 2351 78 0 0 chr11 93655152 93655445 -57128108 + AluSg1 SINE Alu 1 293 -16 2005 148 3 7 chr11 93655483 93655780 -57127773 + AluSx SINE Alu 1 296 -16 856 213 24 0 chr11 93655908 93656072 -57127481 + FAM SINE Alu 4 171 -4 2134 70 0 7 chr11 93656412 93656685 -57126868 + AluY SINE Alu 35 305 -6 785 114 8 38 chr11 93657029 93657161 -57126392 - FLAM_C SINE Alu -5 128 1 22 0 0 0 chr11 93657856 93657878 -57125675 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr11 93659040 93659070 -57124483 + AT_rich Low_complexity Low_complexity 1 30 0 188 128 77 0 chr11 93659599 93659638 -57123915 + L3b LINE CR1 1181 1222 -361 488 207 22 30 chr11 93659650 93659785 -57123768 - MER94 DNA DNA 0 134 1 372 262 154 47 chr11 93660691 93660840 -57122713 - L2 LINE L2 -22 3291 3127 2185 113 27 27 chr11 93661290 93661627 -57121926 + MER1B DNA MER1_type 1 337 0 1113 169 0 28 chr11 93662016 93662193 -57121360 + FAM SINE Alu 4 175 0 27 0 0 0 chr11 93662337 93662364 -57121189 + GC_rich Low_complexity Low_complexity 1 27 0 270 0 0 0 chr11 93662385 93662415 -57121138 + (A)n Simple_repeat Simple_repeat 1 30 0 1970 149 0 16 chr11 93662501 93662816 -57120737 + AluSx SINE Alu 1 310 -2 1110 246 20 66 chr11 93663659 93663797 -57119756 + AluJo SINE Alu 1 144 -158 2289 77 3 3 chr11 93663797 93664084 -57119469 - AluSc SINE Alu -22 287 1 1110 246 20 66 chr11 93664084 93664099 -57119454 + AluJo SINE Alu 144 158 -144 2235 93 0 10 chr11 93664099 93664399 -57119154 - AluSg SINE Alu -13 297 1 1110 246 20 66 chr11 93664399 93664549 -57119004 + AluJo SINE Alu 158 291 -11 1875 145 0 22 chr11 93664880 93665197 -57118356 + AluSx SINE Alu 1 310 -2 2300 82 0 3 chr11 93665347 93665639 -57117914 + AluSg1 SINE Alu 1 291 -18 1993 145 3 3 chr11 93665684 93665974 -57117579 + AluSx SINE Alu 7 296 -16 923 213 24 0 chr11 93666102 93666266 -57117287 + FAM SINE Alu 4 171 -4 2155 73 0 4 chr11 93666606 93666878 -57116675 + AluY SINE Alu 35 305 -6 840 114 8 38 chr11 93667221 93667353 -57116200 - FLAM_C SINE Alu -5 128 1 22 0 0 0 chr11 93668048 93668070 -57115483 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr11 93669232 93669262 -57114291 + AT_rich Low_complexity Low_complexity 1 30 0 189 128 77 0 chr11 93669798 93669837 -57113716 + L3b LINE CR1 1181 1222 -361 548 200 22 30 chr11 93669849 93669984 -57113569 - MER94 DNA DNA 0 134 1 361 262 154 47 chr11 93670890 93671039 -57112514 - L2 LINE L2 -22 3291 3127 2330 113 27 27 chr11 93671491 93671828 -57111725 + MER1B DNA MER1_type 1 337 0 1113 169 0 28 chr11 93672217 93672394 -57111159 + FAM SINE Alu 4 175 0 1534 196 3 3 chr11 93674399 93674684 -57108869 - AluJb SINE Alu -27 285 1 1402 280 118 22 chr11 93674853 93675737 -57107816 + L1MC/D LINE L1 4797 5780 -755 724 176 42 8 chr11 93675738 93675857 -57107696 + AluJo SINE Alu 84 206 -106 180 209 0 149 chr11 93676388 93676455 -57107098 - L2 LINE L2 -11 3261 3205 210 118 0 0 chr11 93676904 93676938 -57106615 + (A)n Simple_repeat Simple_repeat 1 34 0 1798 159 7 7 chr11 93676995 93677285 -57106268 + AluJo SINE Alu 1 290 -22 1267 232 22 4 chr11 93677783 93678055 -57105498 + L1MDa LINE L1 884 1160 -5380 571 152 219 0 chr11 93678055 93678181 -57105372 - FLAM_C SINE Alu 0 149 1 1236 180 63 30 chr11 93678181 93678481 -57105072 + L1MDa LINE L1 1503 1812 -4728 1868 168 13 0 chr11 93678494 93678792 -57104761 + AluJo SINE Alu 1 302 -10 1940 137 0 20 chr11 93678824 93679123 -57104430 - AluSx SINE Alu -19 293 1 1520 207 3 23 chr11 93679355 93679644 -57103909 + AluJb SINE Alu 3 287 -25 306 0 0 0 chr11 93679644 93679678 -57103875 + (TTAAA)n Simple_repeat Simple_repeat 3 36 0 260 326 43 22 chr11 93680985 93681077 -57102476 + L2 LINE L2 3148 3241 -31 242 303 0 0 chr11 93681216 93681282 -57102271 + MIR SINE MIR 197 262 0 663 103 0 0 chr11 93681628 93681715 -57101838 - AluSg SINE Alu -222 88 2 603 217 31 164 chr11 93682069 93682297 -57101256 + MIR SINE MIR 7 191 -71 2238 104 0 0 chr11 93682297 93682584 -57100969 - AluSx SINE Alu -25 287 1 603 217 31 164 chr11 93682584 93682641 -57100912 + MIR SINE MIR 191 254 -8 715 45 0 0 chr11 93682870 93682958 -57100595 - L1PA4 LINE L1 -1 6154 6067 2759 124 0 0 chr11 93683712 93684076 -57099477 + THE1B LTR MaLR 1 364 0 372 266 21 0 chr11 93684343 93684437 -57099116 - MIR3 SINE MIR -15 193 98 387 159 29 0 chr11 93684547 93684616 -57098937 - MIR SINE MIR -81 181 111 184 311 68 14 chr11 93684679 93684753 -57098800 - L2 LINE L2 -27 3245 3168 404 219 27 0 chr11 93685258 93685331 -57098222 + MER58 DNA MER1_type 1 75 -2345 245 130 0 0 chr11 93685342 93685388 -57098165 - LTR66 LTR ERVL -171 439 394 767 137 0 17 chr11 93685397 93685514 -57098039 - AluSg/x SINE Alu -2 307 193 448 228 47 0 chr11 93685514 93685663 -57097890 + MER58 DNA MER1_type 72 227 -2193 396 249 126 52 chr11 93685927 93686077 -57097476 + L1ME4a LINE L1 5832 5969 -152 1845 168 0 16 chr11 93686077 93686380 -57097173 + AluJb SINE Alu 1 298 -14 396 249 126 52 chr11 93686380 93686498 -57097055 + L1ME4a LINE L1 5969 6120 -1 1719 185 3 25 chr11 93686526 93686840 -57096713 + AluJb SINE Alu 1 307 -5 373 359 72 0 chr11 93688963 93689130 -57094423 + MIR3 SINE MIR 19 197 -11 384 235 52 17 chr11 93689446 93689561 -57093992 + MIR3 SINE MIR 85 203 -5 21 0 0 0 chr11 93689752 93689773 -57093780 + AT_rich Low_complexity Low_complexity 1 21 0 2441 81 7 0 chr11 93689853 93690163 -57093390 - AluSp SINE Alu -1 312 1 1941 153 3 34 chr11 93690189 93690509 -57093044 + AluJo SINE Alu 1 310 -2 1123 141 0 12 chr11 93690699 93690862 -57092691 + FRAM SINE Alu 1 160 -16 862 150 0 23 chr11 93691106 93691239 -57092314 + FLAM_C SINE Alu 1 130 -3 396 267 0 38 chr11 93692202 93692307 -57091246 - MIR SINE MIR -65 143 43 971 122 0 0 chr11 93692410 93692541 -57091012 + AluSq/x SINE Alu 1 131 -182 463 341 60 51 chr11 93692760 93693191 -57090362 - L2 LINE L2 -2 3270 2836 2177 85 43 0 chr11 93693900 93694181 -57089372 - AluSp SINE Alu -20 293 1 431 292 51 7 chr11 93694223 93694360 -57089193 - MIR SINE MIR -35 227 85 532 246 194 19 chr11 93695254 93695465 -57088088 - MIR SINE MIR -8 254 7 1492 122 36 27 chr11 93695809 93696031 -57087522 + AluSx SINE Alu 1 224 -88 281 253 0 63 chr11 93696094 93696189 -57087364 - MIR SINE MIR -52 210 122 1733 97 0 0 chr11 93696210 93696426 -57087127 + AluSq SINE Alu 1 216 -97 1947 161 0 7 chr11 93696617 93696921 -57086632 + AluSx SINE Alu 1 302 -10 247 347 66 51 chr11 93697249 93697523 -57086030 + L2 LINE L2 2810 3087 -185 1804 154 35 0 chr11 93697614 93697900 -57085653 - AluSx SINE Alu -16 296 1 198 171 0 0 chr11 93697958 93697999 -57085554 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 2198 38 52 24 chr11 93698710 93698999 -57084554 + AluY SINE Alu 1 297 -14 408 295 29 0 chr11 93699279 93699418 -57084135 + MLT1I LTR MaLR 1 143 -266 276 227 239 0 chr11 93699413 93699501 -57084052 + MLT1I LTR MaLR 301 409 0 * 281 329 171 0 chr11 93700520 93700674 -57082879 - MIR3 SINE MIR -22 186 2 494 111 0 0 chr11 93701039 93701102 -57082451 - AluS SINE Alu -249 64 2 1139 283 72 52 chr11 93701375 93701748 -57081805 - L2 LINE L2 -1 3312 2861 1773 195 94 23 chr11 93701748 93702184 -57081369 + MLT1C LTR MaLR 1 467 0 1139 283 72 52 chr11 93702184 93702407 -57081146 - L2 LINE L2 -452 2861 2644 21 57 0 0 chr11 93702554 93702589 -57080964 + AT_rich Low_complexity Low_complexity 1 35 0 362 312 88 0 chr11 93702697 93702822 -57080731 + LTR16A LTR ERVL 1 136 -314 286 288 45 36 chr11 93703376 93703487 -57080066 + MIR SINE MIR 30 141 -121 235 274 95 24 chr11 93703505 93703589 -57079964 - L2 LINE L2 -45 3227 3138 244 303 97 40 chr11 93703738 93703913 -57079640 - L2 LINE L2 -222 3050 2866 1578 259 83 9 chr11 93704171 93704626 -57078927 - LTR16C LTR ERVL 0 491 3 210 250 21 0 chr11 93704810 93704858 -57078695 + L2 LINE L2 3262 3310 -3 357 323 51 21 chr11 93704912 93705098 -57078455 + MIR SINE MIR 31 216 -46 407 337 34 31 chr11 93705210 93705560 -57077993 - LTR67 LTR ERVL -3 554 124 204 231 125 29 chr11 93705793 93705897 -57077656 - L2 LINE L2 -16 3256 3143 1515 192 17 27 chr11 93706373 93706665 -57076888 - AluJo SINE Alu -23 289 1 322 280 177 48 chr11 93706668 93706854 -57076699 + MIR SINE MIR 47 256 -6 279 304 0 0 chr11 93707587 93707656 -57075897 - L2 LINE L2 0 3313 3245 1625 199 19 6 chr11 93708239 93708555 -57074998 + MLT2D LTR ERVL 1 320 -94 2328 177 31 0 chr11 93708557 93708975 -57074578 + MSTB2 LTR MaLR 1 431 -26 431 140 0 158 chr11 93709053 93709167 -57074386 + MLT2D LTR ERVL 319 414 0 2295 94 37 0 chr11 93709556 93709854 -57073699 - AluSp SINE Alu -4 309 1 419 331 23 8 chr11 93709895 93710028 -57073525 + MIR3 SINE MIR 62 196 -12 2053 90 0 0 chr11 93710040 93710296 -57073257 - AluSx SINE Alu -2 310 55 2215 109 0 31 chr11 93710866 93711188 -57072365 - AluSx SINE Alu 0 312 1 264 255 9 170 chr11 93711273 93711485 -57072068 + MIR SINE MIR 28 152 -56 386 317 93 46 chr11 93712088 93712402 -57071151 - L2 LINE L2 -184 3088 2736 789 241 35 10 chr11 93712402 93712601 -57070952 + MER105 DNA DNA 1 204 0 386 317 93 46 chr11 93712601 93712828 -57070725 - L2 LINE L2 -536 2736 2521 2131 138 0 0 chr11 93712935 93713231 -57070322 + AluSx SINE Alu 1 296 -16 436 234 38 63 chr11 93713629 93713787 -57069766 + MIR3 SINE MIR 49 202 -6 249 295 129 11 chr11 93714252 93714342 -57069211 + MIR SINE MIR 5 103 -105 315 0 0 0 chr11 93714353 93714388 -57069165 + (TG)n Simple_repeat Simple_repeat 1 35 0 186 71 0 0 chr11 93714388 93714416 -57069137 + (CAGAGA)n Simple_repeat Simple_repeat 2 29 0 2170 110 0 0 chr11 93714434 93714716 -57068837 - AluSx SINE Alu -30 282 1 291 282 13 0 chr11 93714718 93714796 -57068757 + MIR SINE MIR 110 188 -74 330 258 72 67 chr11 93715366 93715489 -57068064 - MIR3 SINE MIR -34 174 47 311 356 83 19 chr11 93715674 93715938 -57067615 - L2 LINE L2 -484 2830 2550 2434 155 10 0 chr11 93715968 93716354 -57067199 - L1MA5 LINE L1 -2 6298 5909 1733 162 0 11 chr11 93716838 93717109 -57066444 + AluSx SINE Alu 6 273 -39 2493 68 10 0 chr11 93717132 93717440 -57066113 + AluY SINE Alu 1 311 0 21 0 0 0 chr11 93717751 93717772 -57065781 + AT_rich Low_complexity Low_complexity 1 21 0 2210 67 0 0 chr11 93718209 93718477 -57065076 + AluY SINE Alu 34 301 -10 243 333 34 8 chr11 93718727 93718844 -57064709 + L2 LINE L2 2882 3001 -271 236 255 94 81 chr11 93719396 93719545 -57064008 + L2 LINE L2 3141 3291 -22 2899 231 42 43 chr11 93719743 93720482 -57063071 - MER21B LTR ERV1 -109 754 17 297 338 91 75 chr11 93721105 93721425 -57062128 - L2 LINE L2 0 3272 2948 6660 0 0 36 chr11 93721861 93722014 -57061539 + L1PA13 LINE L1 4242 4405 -1758 252 0 0 0 chr11 93722014 93722042 -57061511 + (CA)n Simple_repeat Simple_repeat 1 28 0 6660 0 0 36 chr11 93722042 93722631 -57060922 + L1PA13 LINE L1 4405 5037 -1126 6660 92 10 18 chr11 93722631 93723004 -57060549 + L1PA13 LINE L1 5089 5463 -700 2126 134 3 0 chr11 93723004 93723294 -57060259 - AluSx SINE Alu -21 291 1 6660 92 10 18 chr11 93723294 93723999 -57059554 + L1PA13 LINE L1 5463 6162 -1 6660 0 0 36 chr11 93723999 93724016 -57059537 + L1PA13 LINE L1 5037 6162 -1 493 221 127 6 chr11 93724937 93725095 -57058458 - L1MC4a LINE L1 -1925 5883 5707 399 200 0 12 chr11 93725391 93725471 -57058082 + L2 LINE L2 3227 3305 -8 1531 108 0 0 chr11 93725551 93725746 -57057807 + AluSg SINE Alu 39 233 -77 24 0 0 0 chr11 93725746 93725770 -57057783 + AT_rich Low_complexity Low_complexity 1 24 0 194 347 71 31 chr11 93726652 93726848 -57056705 + L2 LINE L2 2601 2804 -510 21 0 0 0 chr11 93726909 93726930 -57056623 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr11 93727167 93727200 -57056353 + AT_rich Low_complexity Low_complexity 1 33 0 904 224 58 31 chr11 93727254 93727477 -57056076 - MIR SINE MIR -4 258 30 2529 125 25 5 chr11 93727487 93727720 -57055833 + L1MA6 LINE L1 5550 5796 -504 186 43 0 0 chr11 93727720 93727743 -57055810 + (TA)n Simple_repeat Simple_repeat 1 23 0 2529 125 25 5 chr11 93727743 93727902 -57055651 + L1MA6 LINE L1 5796 5950 -350 1996 138 7 3 chr11 93727903 93728194 -57055359 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr11 93728200 93728222 -57055331 + AT_rich Low_complexity Low_complexity 1 22 0 505 286 22 0 chr11 93729206 93729347 -57054206 + MIR SINE MIR 32 176 -59 313 217 192 25 chr11 93729383 93729503 -57054050 + L1ME4a LINE L1 5982 6121 0 2021 141 0 0 chr11 93729538 93729828 -57053725 + AluJb SINE Alu 1 290 -22 1734 170 13 35 chr11 93729828 93730139 -57053414 + AluJo SINE Alu 1 304 -8 325 328 40 25 chr11 93730965 93731163 -57052390 + L2 LINE L2 2368 2568 -746 251 262 24 71 chr11 93731261 93731345 -57052208 - MIR SINE MIR -111 97 18 258 336 26 18 chr11 93731845 93731958 -57051595 - L2 LINE L2 -4 3268 3155 727 319 98 34 chr11 93732049 93732459 -57051094 - L3 LINE CR1 -1 1576 1141 255 368 0 26 chr11 93732715 93732829 -57050724 - L2 LINE L2 -12 3301 3191 825 135 0 45 chr11 93733441 93733574 -57049979 + FRAM SINE Alu 41 167 -9 6040 142 9 37 chr11 93733608 93734626 -57048927 - L1MC1 LINE L1 0 6333 5345 616 265 59 68 chr11 93734728 93735248 -57048305 - L1ME4a LINE L1 -94 6027 5518 295 218 27 36 chr11 93735629 93735719 -57047834 - MLT1J LTR MaLR -194 317 237 194 0 39 0 chr11 93736020 93736046 -57047507 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 254 332 67 86 chr11 93737851 93738132 -57045421 - L2 LINE L2 -249 3064 2780 316 191 147 0 chr11 93738359 93738427 -57045126 + MIR SINE MIR 67 144 -64 334 254 123 16 chr11 93738536 93738658 -57044895 + MIR SINE MIR 29 163 -99 257 268 56 70 chr11 93738710 93738852 -57044701 - MIR SINE MIR -74 188 49 263 362 134 8 chr11 93739544 93739671 -57043882 - L2 LINE L2 -9 3263 3121 368 271 199 13 chr11 93739795 93739946 -57043607 - MIR SINE MIR -19 243 65 191 368 90 36 chr11 93740045 93740268 -57043285 - L2 LINE L2 -338 2976 2742 290 114 0 45 chr11 93740316 93740360 -57043193 + MLT1D LTR MaLR 5 46 -459 732 125 17 42 chr11 93740391 93740511 -57043042 + MER45A DNA AcHobo 58 174 -4 316 339 124 11 chr11 93740633 93740810 -57042743 + MIR SINE MIR 66 262 0 808 307 96 32 chr11 93741469 93741906 -57041647 - L2 LINE L2 -818 2496 2032 1845 152 10 10 chr11 93742045 93742341 -57041212 - AluSx SINE Alu -16 296 1 2090 133 0 7 chr11 93742524 93742825 -57040728 + AluSx SINE Alu 1 299 -13 2528 135 22 0 chr11 93742850 93743206 -57040347 + THE1B LTR MaLR 1 364 0 2049 237 49 64 chr11 93743587 93743915 -57039638 + MER21B LTR ERV1 1 317 -546 2687 39 0 0 chr11 93743915 93744220 -57039333 + AluY SINE Alu 1 305 -6 2049 237 49 64 chr11 93744220 93744502 -57039051 + MER21B LTR ERV1 317 602 -261 5995 141 22 41 chr11 93744503 93745109 -57038444 + L1MA9 LINE L1 4760 5376 -936 2437 97 6 0 chr11 93745109 93745420 -57038133 + AluSp SINE Alu 1 313 0 5995 141 22 41 chr11 93745420 93746390 -57037163 + L1MA9 LINE L1 5376 6307 -5 527 250 101 34 chr11 93746400 93746608 -57036945 + MER21B LTR ERV1 589 810 -53 288 0 0 0 chr11 93746708 93746740 -57036813 + (TG)n Simple_repeat Simple_repeat 2 33 0 443 329 142 13 chr11 93747120 93747345 -57036208 + MIR SINE MIR 7 260 -2 2139 125 3 3 chr11 93747766 93748077 -57035476 + AluSx SINE Alu 1 311 -1 182 215 204 75 chr11 93748107 93748200 -57035353 - L2 LINE L2 0 3272 3168 324 348 94 0 chr11 93748267 93748405 -57035148 + MER5B DNA MER1_type 26 176 -2 212 283 185 29 chr11 93748668 93748841 -57034712 + L2 LINE L2 3112 3311 -2 913 210 26 10 chr11 93748965 93749160 -57034393 + AluJo SINE Alu 106 303 -9 27 0 0 0 chr11 93749254 93749281 -57034272 + AT_rich Low_complexity Low_complexity 1 27 0 777 150 18 0 chr11 93749315 93749428 -57034125 - AluSg/x SINE Alu -20 290 176 246 356 52 15 chr11 93749552 93749687 -57033866 - MIR SINE MIR -119 143 4 745 242 59 43 chr11 93751348 93751604 -57031949 + MIR SINE MIR 2 261 -1 2313 105 0 3 chr11 93752493 93752797 -57030756 + AluSx SINE Alu 1 303 -9 408 219 133 9 chr11 93753331 93753436 -57030117 - MLT1D LTR MaLR -387 118 1 349 302 65 77 chr11 93753685 93754229 -57029324 - L2 LINE L2 -67 3246 2719 2282 116 0 0 chr11 93754302 93754612 -57028941 + AluSx SINE Alu 1 310 -2 303 320 84 84 chr11 93754893 93755215 -57028338 - L2 LINE L2 -5 3267 2946 1455 223 27 3 chr11 93755810 93756125 -57027428 - AluJb SINE Alu 0 312 6 28 0 0 0 chr11 93756449 93756477 -57027076 + AT_rich Low_complexity Low_complexity 1 28 0 195 203 354 13 chr11 93757131 93757210 -57026343 - MER5A DNA MER1_type -80 109 4 210 37 0 0 chr11 93757313 93757340 -57026213 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 566 295 44 11 chr11 93757503 93757686 -57025867 + MIR3 SINE MIR 17 205 -3 190 302 105 0 chr11 93759321 93759407 -57024146 + L2 LINE L2 2960 3054 -218 907 180 77 11 chr11 93759530 93759713 -57023840 + MIR SINE MIR 68 262 0 205 284 0 111 chr11 93759723 93759765 -57023788 + L2 LINE L2 3201 3231 -41 333 269 138 25 chr11 93759765 93759925 -57023628 - MER5B DNA MER1_type 0 178 1 205 284 0 111 chr11 93759925 93759963 -57023590 + L2 LINE L2 3231 3272 0 846 77 0 10 chr11 93759995 93760099 -57023454 + U6 snRNA snRNA 2 104 -3 1557 154 4 0 chr11 93760646 93760880 -57022673 + AluJo SINE Alu 1 235 -77 380 198 36 9 chr11 93761103 93761184 -57022369 + L1MC/D LINE L1 4497 4583 -1563 2173 131 3 0 chr11 93761184 93761481 -57022072 + AluSx SINE Alu 1 298 -14 380 198 36 9 chr11 93761481 93761510 -57022043 + L1MC/D LINE L1 4583 4610 -1536 477 285 55 22 chr11 93761566 93761934 -57021619 + L1MC/D LINE L1 5217 5597 -743 517 290 83 30 chr11 93762031 93762200 -57021353 + MIR SINE MIR 6 183 -79 576 161 0 0 chr11 93762211 93762298 -57021255 + AluJ/FLAM SINE Alu 2 88 -224 777 149 0 85 chr11 93762538 93762679 -57020874 + FLAM_C SINE Alu 1 129 -4 2184 127 7 0 chr11 93763928 93764236 -57019317 - AluSx SINE Alu -2 310 1 872 277 62 4 chr11 93764355 93764597 -57018956 - MIR SINE MIR -2 260 5 210 298 71 12 chr11 93765623 93765707 -57017846 - L2 LINE L2 -190 3082 2994 495 45 0 0 chr11 93765707 93765773 -57017780 + (TG)n Simple_repeat Simple_repeat 2 67 0 628 202 225 6 chr11 93765931 93766104 -57017449 + MIR SINE MIR 15 225 -37 187 390 85 8 chr11 93766232 93766350 -57017203 - L2 LINE L2 -39 3233 3107 1466 211 74 108 chr11 93766705 93767068 -57016485 + MLT1F LTR MaLR 7 346 -196 783 113 0 85 chr11 93767068 93767209 -57016344 + FLAM_C SINE Alu 1 129 -4 1466 211 74 108 chr11 93767209 93767399 -57016154 + MLT1F LTR MaLR 346 541 -1 408 345 82 6 chr11 93767433 93767604 -57015949 + L2 LINE L2 3087 3270 -2 497 307 68 11 chr11 93767662 93767838 -57015715 - MIR SINE MIR -76 186 1 189 339 200 19 chr11 93768056 93768191 -57015362 - MIR SINE MIR -89 173 19 380 284 28 28 chr11 93769405 93769514 -57014039 + MIR SINE MIR 46 154 -108 1806 160 0 7 chr11 93769531 93769819 -57013734 - AluJb SINE Alu -26 286 1 2086 132 0 0 chr11 93770358 93770646 -57012907 - AluSx SINE Alu -24 288 1 209 343 19 65 chr11 93770925 93771033 -57012520 - MIR SINE MIR -86 122 20 487 273 135 100 chr11 93771334 93771645 -57011908 - L2 LINE L2 -13 3259 2938 195 146 62 0 chr11 93772373 93772421 -57011132 + L2 LINE L2 3263 3313 0 6343 68 24 11 chr11 93772514 93773600 -57009953 + L1PA13 LINE L1 5048 6144 -19 675 223 0 8 chr11 93774052 93774173 -57009380 + FLAM_A SINE Alu 1 120 -13 686 204 13 0 chr11 93774175 93774332 -57009221 + (TATG)n Simple_repeat Simple_repeat 2 160 0 214 318 0 12 chr11 93774753 93774838 -57008715 + MIR3 SINE MIR 2 85 -123 216 0 0 0 chr11 93775076 93775100 -57008453 + (A)n Simple_repeat Simple_repeat 1 24 0 190 384 50 0 chr11 93775854 93775953 -57007600 + MIR SINE MIR 48 151 -111 228 224 0 0 chr11 93776268 93776317 -57007236 - AluJo SINE Alu -2 300 252 1198 166 0 0 chr11 93776317 93776492 -57007061 - AluJo SINE Alu -137 175 1 2300 85 0 3 chr11 93777372 93777665 -57005888 + AluSq SINE Alu 1 292 -21 2258 91 0 19 chr11 93778105 93778413 -57005140 + AluSg SINE Alu 1 302 -8 1920 131 45 3 chr11 93778562 93778853 -57004700 + AluSx SINE Alu 1 303 -9 445 105 0 70 chr11 93779086 93779172 -57004381 - Alu SINE Alu 0 309 230 872 98 0 0 chr11 93779172 93779284 -57004269 - AluSq/x SINE Alu -201 112 1 2106 116 0 20 chr11 93779469 93779771 -57003782 + AluSx SINE Alu 1 296 -16 471 219 142 47 chr11 93780031 93780200 -57003353 - MIR SINE MIR -12 250 66 784 201 24 75 chr11 93780321 93780575 -57002978 + L1MC4 LINE L1 7799 8039 -3 191 292 42 52 chr11 93780606 93780702 -57002851 - MIR SINE MIR -157 105 11 311 319 124 43 chr11 93780910 93781095 -57002458 + L1MC/D LINE L1 5552 5751 -2057 2186 134 0 0 chr11 93781139 93781444 -57002109 + AluSx SINE Alu 1 305 -7 921 231 20 4 chr11 93782724 93782975 -57000578 + L1MB7 LINE L1 4453 4707 -1439 180 0 0 0 chr11 93783141 93783161 -57000392 + (A)n Simple_repeat Simple_repeat 1 20 0 595 228 0 8 chr11 93783799 93783922 -56999631 - FLAM_A SINE Alu -11 122 1 2153 127 0 0 chr11 93784322 93784614 -56998939 + AluSx SINE Alu 9 300 -12 2088 135 83 6 chr11 93784979 93785327 -56998226 + THE1C LTR MaLR 1 375 0 313 211 83 90 chr11 93785815 93785971 -56997582 - L1M4c LINE L1 -5196 1188 1034 816 219 94 63 chr11 93786106 93786457 -56997096 + MER57A LTR ERV1 42 403 0 1825 173 7 0 chr11 93786512 93786796 -56996757 - AluJb SINE Alu -22 290 5 305 68 0 0 chr11 93787713 93787757 -56995796 - AluSp/q SINE Alu -8 295 252 862 99 0 0 chr11 93787758 93787869 -56995684 - AluSp SINE Alu -202 111 1 2178 95 17 3 chr11 93787981 93788275 -56995278 + AluSq SINE Alu 1 298 -15 3874 178 45 34 chr11 93788625 93788790 -56994763 + L1MB7 LINE L1 4965 5127 -1057 2128 133 7 3 chr11 93788790 93789090 -56994463 + AluSx SINE Alu 5 305 -7 3874 178 45 34 chr11 93789090 93790112 -56993441 + L1MB7 LINE L1 5127 6165 -19 2310 75 3 7 chr11 93790189 93790483 -56993070 + AluSg SINE Alu 1 293 -17 191 36 36 0 chr11 93790486 93790514 -56993039 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1848 165 52 0 chr11 93790544 93790871 -56992682 - MER2 DNA MER2_type 0 344 1 274 200 80 67 chr11 93791693 93791768 -56991785 + MER91C DNA MER1_type 30 105 -35 200 268 113 31 chr11 93792163 93792260 -56991293 - L2 LINE L2 -6 3266 3162 1354 153 165 4 chr11 93792451 93792693 -56990860 + AluJo SINE Alu 1 281 -31 1344 181 183 17 chr11 93793148 93793587 -56989966 - Charlie1b DNA MER1_type -15 508 1 3976 177 38 27 chr11 93793591 93793979 -56989574 + L1MC1 LINE L1 4863 5245 -1088 2114 136 0 7 chr11 93793979 93794289 -56989264 + AluSx SINE Alu 1 308 -4 3976 177 38 27 chr11 93794289 93795158 -56988395 + L1MC1 LINE L1 5245 6128 -205 2489 75 0 3 chr11 93795158 93795466 -56988087 + AluSq SINE Alu 1 307 -6 1122 190 5 9 chr11 93795474 93795690 -56987863 - AluJo SINE Alu -97 215 1 180 111 0 0 chr11 93796351 93796378 -56987175 + (GGA)n Simple_repeat Simple_repeat 2 28 0 213 280 0 0 chr11 93797157 93797207 -56986346 - L3 LINE CR1 -20 1557 1508 297 0 0 0 chr11 93797664 93797697 -56985856 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1026 158 13 0 chr11 93799586 93799744 -56983809 - AluJb SINE Alu -33 279 120 2287 99 3 0 chr11 93799885 93800189 -56983364 - AluSq SINE Alu -8 305 1 2031 137 40 0 chr11 93800275 93800574 -56982979 - AluSx SINE Alu -1 311 1 880 96 0 22 chr11 93800621 93800788 -56982765 - FLAM_C SINE Alu 0 164 1 2111 131 0 0 chr11 93800960 93801257 -56982296 - AluSg SINE Alu -13 297 1 42 0 0 0 chr11 93801954 93801996 -56981557 + AT_rich Low_complexity Low_complexity 1 42 0 668 270 103 21 chr11 93802490 93802723 -56980830 + MIR SINE MIR 8 259 -3 2198 128 3 0 chr11 93802926 93803231 -56980322 - AluSq SINE Alu -7 306 1 1395 214 3 18 chr11 93803893 93804178 -56979375 - AluJo SINE Alu -31 281 1 538 336 94 8 chr11 93804370 93804605 -56978948 + MIR SINE MIR 7 261 -1 2055 218 111 15 chr11 93805084 93805732 -56977821 - L1ME2 LINE L1 -48 6116 5407 477 299 82 0 chr11 93806302 93806449 -56977104 + MIR SINE MIR 96 254 -8 2042 141 7 3 chr11 93806566 93806865 -56976688 - AluSx SINE Alu -12 300 1 247 234 0 0 chr11 93806885 93806932 -56976621 - MIR SINE MIR -63 199 153 185 250 44 59 chr11 93806927 93806995 -56976558 - MIR3 SINE MIR -132 76 10 * 21 57 0 0 chr11 93807568 93807603 -56975950 + AT_rich Low_complexity Low_complexity 1 35 0 198 309 73 0 chr11 93809524 93809592 -56973961 + MIR SINE MIR 10 82 -180 659 188 58 14 chr11 93809624 93809762 -56973791 - MER5A DNA MER1_type -2 187 44 1118 115 111 20 chr11 93810391 93810635 -56972918 + L1MA4 LINE L1 6035 6300 0 536 174 10 0 chr11 93810673 93810771 -56972782 + FLAM_A SINE Alu 1 99 -43 1607 177 55 0 chr11 93810814 93811085 -56972468 - AluJo SINE Alu -26 286 1 2411 75 0 0 chr11 93811185 93811478 -56972075 + AluY SINE Alu 1 293 -18 1915 162 3 3 chr11 93811514 93811823 -56971730 + AluSx SINE Alu 1 309 -3 2222 118 0 0 chr11 93811830 93812127 -56971426 + AluSx SINE Alu 5 301 -11 22 0 0 0 chr11 93812316 93812338 -56971215 + AT_rich Low_complexity Low_complexity 1 22 0 21 89 0 0 chr11 93813428 93813484 -56970069 + AT_rich Low_complexity Low_complexity 1 56 0 181 200 44 22 chr11 93813498 93813543 -56970010 + L2 LINE L2 3191 3236 -77 29 0 0 0 chr11 93814513 93814542 -56969011 + AT_rich Low_complexity Low_complexity 1 29 0 1776 155 0 4 chr11 93814593 93814858 -56968695 + AluSx SINE Alu 1 264 -48 180 0 0 0 chr11 93814858 93814878 -56968675 + (GAAAA)n Simple_repeat Simple_repeat 5 24 0 728 204 20 48 chr11 93815580 93815727 -56967826 + AluJo SINE Alu 4 146 -166 2103 134 0 7 chr11 93815857 93816155 -56967398 + AluSx SINE Alu 2 297 -15 1706 199 3 3 chr11 93816213 93816510 -56967043 + AluJo SINE Alu 3 299 -13 2140 111 0 20 chr11 93817010 93817316 -56966237 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr11 93817416 93817437 -56966116 + AT_rich Low_complexity Low_complexity 1 21 0 1754 135 46 14 chr11 93817460 93817742 -56965811 + AluJo SINE Alu 13 303 -9 198 0 0 0 chr11 93819566 93819588 -56963965 + (T)n Simple_repeat Simple_repeat 1 22 0 215 170 21 0 chr11 93820891 93820938 -56962615 + CT-rich Low_complexity Low_complexity 1 48 0 263 236 42 0 chr11 93820955 93821027 -56962526 + CT-rich Low_complexity Low_complexity 3 77 0 260 326 185 5 chr11 93821619 93821803 -56961750 + MIR SINE MIR 34 250 -12 620 229 8 0 chr11 93821828 93821950 -56961603 + FLAM_A SINE Alu 1 123 -10 728 268 91 14 chr11 93822252 93822472 -56961081 + MIR SINE MIR 26 262 0 2836 19 0 0 chr11 93822908 93823220 -56960333 + AluYb8 SINE Alu 1 312 -6 196 399 89 6 chr11 93824559 93824727 -56958826 - L3 LINE CR1 -11 1566 1385 29 0 0 0 chr11 93825725 93825754 -56957799 + AT_rich Low_complexity Low_complexity 1 29 0 2830 16 3 0 chr11 93826860 93827172 -56956381 + AluYb8 SINE Alu 3 315 -3 2156 98 17 10 chr11 93827973 93828269 -56955284 - AluSx SINE Alu -14 298 1 241 224 0 0 chr11 93828269 93828309 -56955244 - AluJ/monomer SINE Alu -89 44 2 302 254 88 35 chr11 93829204 93829318 -56954235 - MIR3 SINE MIR -2 206 87 222 231 256 0 chr11 93829334 93829412 -56954141 - L2 LINE L2 -5 3267 3170 236 69 0 0 chr11 93830013 93830042 -56953511 + Alu SINE Alu 86 114 -188 759 199 64 12 chr11 93830296 93830467 -56953086 + FAM SINE Alu 1 49 0 221 191 0 0 chr11 93831251 93831293 -56952260 + MIR SINE MIR 211 252 -10 245 231 13 34 chr11 93831713 93831826 -56951727 - FLAM_A SINE Alu 0 133 75 295 195 73 122 chr11 93832281 93832404 -56951149 + MIR SINE MIR 128 244 -18 880 208 16 31 chr11 93832875 93833204 -56950349 + MSTD LTR MaLR 1 396 0 2203 97 13 13 chr11 93833643 93833952 -56949601 - AluSg SINE Alu -1 309 1 792 218 0 0 chr11 93834059 93834201 -56949352 - AluJo SINE Alu -31 281 140 296 304 51 38 chr11 93834282 93834440 -56949113 - MIR SINE MIR -46 216 57 1083 218 105 87 chr11 93834440 93834886 -56948667 + MLT1C LTR MaLR 9 462 -5 207 191 0 0 chr11 93835545 93835592 -56947961 + A-rich Low_complexity Low_complexity 2 48 0 1336 162 166 0 chr11 93835885 93836144 -56947409 + AluJo SINE Alu 1 302 0 450 0 0 0 chr11 93836781 93836831 -56946722 + (CA)n Simple_repeat Simple_repeat 2 51 0 787 182 0 15 chr11 93837520 93837652 -56945901 - AluJo SINE Alu -172 130 1 23 0 0 0 chr11 93837657 93837680 -56945873 + AT_rich Low_complexity Low_complexity 1 23 0 533 322 85 0 chr11 93837883 93838082 -56945471 - L2 LINE L2 0 3313 3098 1761 128 49 0 chr11 93838367 93838633 -56944920 + AluSx SINE Alu 1 279 -33 1931 163 0 0 chr11 93839291 93839592 -56943961 + AluJb SINE Alu 5 305 -7 2064 134 0 0 chr11 93839618 93839916 -56943637 - AluSq SINE Alu -15 298 1 24 0 0 0 chr11 93840583 93840607 -56942946 + AT_rich Low_complexity Low_complexity 1 24 0 1402 137 72 108 chr11 93841163 93841498 -56942055 + MER44D DNA MER2_type 17 609 0 2374 112 0 0 chr11 93843426 93843731 -56939822 - AluSx SINE Alu -7 305 1 24 0 0 0 chr11 93846295 93846319 -56937234 + AT_rich Low_complexity Low_complexity 1 24 0 2197 119 3 0 chr11 93847042 93847353 -56936200 + AluSq SINE Alu 1 312 -1 814 211 59 25 chr11 93847860 93848064 -56935489 - MER82 DNA MER2_type 0 653 443 375 297 44 47 chr11 93848093 93848281 -56935272 + MIR SINE MIR 3 190 -18 404 220 55 0 chr11 93848294 93848385 -56935168 - MER82 DNA MER2_type -557 96 1 704 316 32 12 chr11 93848535 93848788 -56934765 + MIR SINE MIR 3 260 -2 2211 86 3 23 chr11 93849158 93849461 -56934092 + AluY SINE Alu 1 297 -14 2764 20 0 0 chr11 93850262 93850565 -56932988 - AluYb8 SINE Alu -15 303 1 29 0 0 0 chr11 93851669 93851698 -56931855 + AT_rich Low_complexity Low_complexity 1 29 0 182 405 89 6 chr11 93852697 93852865 -56930688 + L3 LINE CR1 1385 1566 -11 306 0 0 0 chr11 93854204 93854238 -56929315 + (T)n Simple_repeat Simple_repeat 1 34 0 225 0 0 0 chr11 93854266 93854291 -56929262 + (G)n Simple_repeat Simple_repeat 1 25 0 195 139 0 0 chr11 93854426 93854462 -56929091 + (C)n Simple_repeat Simple_repeat 1 36 0 243 0 0 0 chr11 93854488 93854515 -56929038 + (A)n Simple_repeat Simple_repeat 1 27 0 989 211 114 82 chr11 93854528 93854930 -56928623 + MLT1D LTR MaLR 91 505 0 682 267 20 71 chr11 93854952 93855248 -56928305 - L2 LINE L2 -614 2700 2420 10854 185 37 34 chr11 93855939 93856614 -56926939 - L1MC1 LINE L1 -6 6607 5936 2086 112 23 3 chr11 93856614 93856917 -56926636 - AluSx SINE Alu -3 309 1 10854 185 37 34 chr11 93856917 93857431 -56926122 - L1MC1 LINE L1 -677 5936 5425 2163 139 0 0 chr11 93857431 93857740 -56925813 - AluJb SINE Alu -3 309 1 10854 185 37 34 chr11 93857740 93857895 -56925658 - L1MC1 LINE L1 -1188 5425 5272 1596 189 54 23 chr11 93857895 93858249 -56925304 + MLT1A1 LTR MaLR 1 365 0 10854 185 37 34 chr11 93858249 93859852 -56923701 - L1MC1 LINE L1 -1341 5272 3676 2135 113 0 0 chr11 93859852 93860158 -56923395 - AluSg SINE Alu 0 306 1 10854 185 37 34 chr11 93860158 93861347 -56922206 - L1MC1 LINE L1 -2937 3676 2492 1932 138 7 13 chr11 93861347 93861652 -56921901 - AluSx SINE Alu -4 308 6 10854 185 37 34 chr11 93861652 93862332 -56921221 - L1MC1 LINE L1 -4121 2492 1816 2319 116 0 7 chr11 93862332 93862642 -56920911 - AluSx SINE Alu -4 308 1 10854 185 37 34 chr11 93862642 93863679 -56919874 - L1MC1 LINE L1 -4797 1816 529 1636 225 85 92 chr11 93863704 93864278 -56919275 + MER21B LTR ERV1 1 570 -293 618 89 0 0 chr11 93864278 93864427 -56919126 - AluSg/x SINE Alu 0 351 203 789 230 46 32 chr11 93864429 93864646 -56918907 + MER21B LTR ERV1 562 781 -82 2649 164 17 50 chr11 93864655 93865130 -56918423 - L1MC1 LINE L1 -5899 527 69 2324 91 0 3 chr11 93865130 93865426 -56918127 - AluSg SINE Alu -14 296 2 2649 164 17 50 chr11 93865426 93865475 -56918078 - L1MC1 LINE L1 -6357 69 20 183 384 189 0 chr11 93865476 93865682 -56917871 - L2 LINE L2 -965 2349 2105 2332 109 0 0 chr11 93866645 93866948 -56916605 + AluSx SINE Alu 1 303 -9 289 314 12 0 chr11 93866981 93867067 -56916486 - MIR3 SINE MIR -38 170 84 253 138 31 46 chr11 93867307 93867372 -56916181 + MER116 DNA Mariner 2 65 -15 2069 141 13 3 chr11 93867373 93867679 -56915874 + AluSx SINE Alu 3 311 -1 278 235 12 0 chr11 93867682 93867763 -56915790 + A-rich Low_complexity Low_complexity 3 84 0 422 264 0 0 chr11 93867773 93867860 -56915693 + MLT1F LTR MaLR 1 87 -455 2489 203 19 13 chr11 93867907 93868376 -56915177 + MLT1F LTR MaLR 1 472 -70 962 165 11 17 chr11 93868379 93868555 -56914998 - FAM SINE Alu -7 42 1 257 62 0 0 chr11 93868565 93868597 -56914956 + MLT1F LTR MaLR 482 513 -29 1492 189 21 21 chr11 93868634 93868925 -56914628 + AluJo SINE Alu 1 291 -21 350 278 0 0 chr11 93868927 93869017 -56914536 + L1MC4 LINE L1 6614 6703 -1339 932 160 0 0 chr11 93869030 93869161 -56914392 + AluJo/FLAM SINE Alu 1 131 -171 2247 85 29 13 chr11 93869163 93869469 -56914084 + AluY SINE Alu 1 311 0 26 0 0 0 chr11 93870151 93870177 -56913376 + AT_rich Low_complexity Low_complexity 1 26 0 555 228 13 60 chr11 93870238 93870387 -56913166 - Zaphod DNA AcHobo -1 4030 3889 * 2867 229 55 80 chr11 93870386 93870621 -56912932 - Zaphod DNA AcHobo -2957 1074 835 646 183 0 0 chr11 93870621 93870725 -56912828 + U13 snRNA snRNA 1 104 0 2867 229 55 80 chr11 93870725 93871136 -56912417 - Zaphod DNA AcHobo -3196 835 415 1888 137 47 7 chr11 93871136 93871436 -56912117 + AluSx SINE Alu 1 312 0 2867 229 55 80 chr11 93871436 93871800 -56911753 - Zaphod DNA AcHobo -3616 415 90 2332 67 0 3 chr11 93871800 93872109 -56911444 + AluY SINE Alu 1 308 0 2867 229 55 80 chr11 93872109 93872196 -56911357 - Zaphod DNA AcHobo -3941 90 2 22 0 0 54 chr11 93872260 93872280 -56911273 + AT_rich Low_complexity Low_complexity 1 20 -15 1868 160 11 0 chr11 93872280 93872567 -56910986 - AluSx SINE Alu -22 290 1 22 0 0 54 chr11 93872567 93872583 -56910970 + AT_rich Low_complexity Low_complexity 20 35 0 783 233 36 43 chr11 93872590 93872843 -56910710 + MIR SINE MIR 1 251 -11 712 297 95 0 chr11 93872928 93873160 -56910393 - MIR SINE MIR -1 261 8 211 263 242 0 chr11 93873266 93873365 -56910188 + L2 LINE L2 3189 3311 -2 1796 169 3 14 chr11 93873408 93873704 -56909849 - AluJo SINE Alu -19 293 1 801 233 5 43 chr11 93873807 93874017 -56909536 + AluJo SINE Alu 86 287 -25 1150 276 81 39 chr11 93874677 93875111 -56908442 + MLT1J LTR MaLR 25 476 -35 2309 109 0 0 chr11 93875545 93875847 -56907706 - AluSq SINE Alu -11 302 1 413 285 66 24 chr11 93876552 93876734 -56906819 + MIR3 SINE MIR 9 190 -62 22 0 0 0 chr11 93876757 93876779 -56906774 + AT_rich Low_complexity Low_complexity 1 22 0 393 117 0 0 chr11 93876828 93876888 -56906665 + (TCCC)n Simple_repeat Simple_repeat 4 63 0 1548 134 0 0 chr11 93876922 93877145 -56906408 - AluSg/x SINE Alu -7 303 81 690 190 0 70 chr11 93877146 93877247 -56906306 - AluJo/FLAM SINE Alu -169 133 43 2170 99 14 10 chr11 93877247 93877539 -56906014 - AluSx SINE Alu -19 293 1 690 190 0 70 chr11 93877539 93877579 -56905974 - AluJo/FLAM SINE Alu -259 43 2 301 283 88 26 chr11 93878474 93878587 -56904966 - MIR3 SINE MIR -2 206 87 221 209 233 35 chr11 93878594 93878680 -56904873 - L2 LINE L2 0 3272 3170 236 69 0 0 chr11 93879280 93879309 -56904244 + Alu SINE Alu 86 114 -19 858 201 65 0 chr11 93879563 93879732 -56903821 + FAM SINE Alu 1 49 0 223 191 0 0 chr11 93880516 93880558 -56902995 + MIR SINE MIR 211 252 -10 11998 20 1 0 chr11 93880931 93883003 -56900550 + L1PA3 LINE L1 4080 6152 -3 186 43 0 0 chr11 93883007 93883030 -56900523 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr11 93883289 93883312 -56900241 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr11 93883345 93883382 -56900171 + AT_rich Low_complexity Low_complexity 1 37 0 348 295 9 27 chr11 93883459 93883571 -56899982 - MER5A DNA MER1_type -29 160 51 207 369 31 23 chr11 93883475 93883605 -56899948 + MER5A DNA MER1_type 56 186 -3 * 219 277 15 109 chr11 93883715 93883852 -56899701 - MIR SINE MIR -70 192 69 21 0 0 0 chr11 93884726 93884747 -56898806 + AT_rich Low_complexity Low_complexity 1 21 0 2624 92 113 15 chr11 93885560 93885950 -56897603 - MSTA LTR MaLR 0 428 1 286 329 0 33 chr11 93886002 93886154 -56897399 + CT-rich Low_complexity Low_complexity 2 148 0 279 200 0 0 chr11 93886170 93886215 -56897338 + C-rich Low_complexity Low_complexity 135 179 0 5803 67 20 55 chr11 93886218 93886333 -56897220 + SVA Other Other 1 868 -1275 5803 68 21 57 chr11 93886333 93887233 -56896320 + SVA Other Other 1 868 -518 1141 92 41 87 chr11 93887299 93887930 -56895623 + SVA Other Other 536 866 -520 6670 66 14 42 chr11 93887943 93888927 -56894626 + SVA Other Other 430 1386 0 22 35 0 0 chr11 93888932 93888961 -56894592 + AT_rich Low_complexity Low_complexity 1 29 0 2083 145 0 0 chr11 93888961 93889285 -56894268 - L1MA5A LINE L1 -6 6291 5968 27 81 0 0 chr11 93889537 93889599 -56893954 + AT_rich Low_complexity Low_complexity 1 62 0 21 0 0 0 chr11 93889726 93889747 -56893806 + AT_rich Low_complexity Low_complexity 1 21 0 939 127 15 0 chr11 93889747 93889881 -56893672 - AluJo SINE Alu -176 136 1 1470 316 44 27 chr11 93890502 93891259 -56892294 + L2 LINE L2 2289 3068 -245 1832 169 10 16 chr11 93891355 93891668 -56891885 - AluSx SINE Alu -1 311 1 344 237 99 115 chr11 93891722 93891975 -56891578 + L2 LINE L2 3065 3313 0 523 294 167 18 chr11 93892495 93892723 -56890830 - MIR SINE MIR 0 262 1 317 271 70 122 chr11 93893531 93893760 -56889793 + MIR SINE MIR 46 262 0 442 261 43 36 chr11 93894126 93894264 -56889289 - MIR SINE MIR -62 146 14 290 253 81 35 chr11 93894493 93894606 -56888947 - MIR3 SINE MIR -23 185 64 222 259 0 0 chr11 93894607 93894661 -56888892 - L3 LINE CR1 -862 715 662 279 270 24 46 chr11 93894722 93894868 -56888685 + MIR SINE MIR 42 183 -62 354 246 65 0 chr11 93895378 93895494 -56888059 + MIR SINE MIR 74 200 -62 2004 124 3 3 chr11 93896200 93896542 -56887011 + AluSx SINE Alu 1 342 0 201 246 0 0 chr11 93897501 93897566 -56885987 + CT-rich Low_complexity Low_complexity 2 66 0 1907 182 7 61 chr11 93898231 93898560 -56884993 - MLT1B LTR MaLR 0 390 86 2007 102 6 67 chr11 93898560 93898874 -56884679 - AluSp SINE Alu -18 295 1 1907 182 7 61 chr11 93898874 93898956 -56884597 - MLT1B LTR MaLR -304 86 1 1230 200 47 81 chr11 93899161 93899572 -56883981 + MLT2D LTR ERVL 1 534 -20 306 256 0 13 chr11 93901084 93901162 -56882391 + MER103 DNA DNA 3 79 -87 593 213 50 99 chr11 93901166 93901368 -56882185 - L2 LINE L2 -1 3312 3121 1024 291 149 16 chr11 93901418 93901982 -56881571 - L2 LINE L2 -353 2961 2323 279 115 19 0 chr11 93901982 93902034 -56881519 - MADE1 DNA Mariner 0 80 28 40 59 0 0 chr11 93902062 93902130 -56881423 + AT_rich Low_complexity Low_complexity 1 68 0 455 249 80 45 chr11 93902130 93902219 -56881334 - L2 LINE L2 -1028 2286 2202 1904 152 7 0 chr11 93902219 93902502 -56881051 + AluSx SINE Alu 1 285 -27 455 249 80 45 chr11 93902502 93902613 -56880940 - L2 LINE L2 -1112 2202 2079 450 79 0 0 chr11 93903415 93903478 -56880075 + (TC)n Simple_repeat Simple_repeat 2 64 0 315 71 0 0 chr11 93903478 93903520 -56880033 + (CA)n Simple_repeat Simple_repeat 1 42 0 300 235 61 51 chr11 93903747 93903845 -56879708 + MIR3 SINE MIR 82 180 -28 511 311 57 24 chr11 93904039 93904251 -56879302 + MIR SINE MIR 2 220 -42 2480 86 11 6 chr11 93905057 93905405 -56878148 + L1P LINE L1 1972 2321 -3825 4898 22 0 1 chr11 93955432 93956247 -56827306 - L1PA4 LINE L1 -326 5829 5016 5176 178 22 1 chr11 93956967 93957287 -56826266 + L1P LINE L1 2892 3204 -2942 189 0 0 0 chr11 93957287 93957308 -56826245 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 5176 178 22 1 chr11 93957308 93957981 -56825572 + L1P LINE L1 3204 3906 -2240 27 49 0 0 chr11 93958692 93958733 -56824820 + AT_rich Low_complexity Low_complexity 1 41 0 2256 116 0 0 chr11 93958736 93959030 -56824523 + AluSg SINE Alu 1 294 -16 1900 77 0 0 chr11 93959257 93959505 -56824048 + L1PA8 LINE L1 5922 6169 -3 4016 124 22 1 chr11 93959509 93960297 -56823256 - L1PB1 LINE L1 -280 5871 5068 211 284 119 0 chr11 93960889 93960956 -56822597 - MIR3 SINE MIR -5 203 129 25 0 0 28 chr11 93961437 93961459 -56822094 + AT_rich Low_complexity Low_complexity 1 23 -12 1569 154 3 66 chr11 93961459 93961777 -56821776 + AluJo SINE Alu 1 298 -14 25 0 0 28 chr11 93961777 93961790 -56821763 + AT_rich Low_complexity Low_complexity 23 35 0 1023 151 0 2 chr11 93961940 93962386 -56821167 + (CATTC)n Satellite Satellite 1 445 0 447 217 0 0 chr11 93962451 93962608 -56820945 + (CATTC)n Satellite Satellite 4 160 0 792 158 0 0 chr11 93962633 93962953 -56820600 + (CATTC)n Satellite Satellite 1 320 0 334 195 8 8 chr11 93963123 93963251 -56820302 + (CATTC)n Satellite Satellite 1 128 0 842 115 0 6 chr11 93963294 93963451 -56820102 + (CATTC)n Satellite Satellite 5 160 0 912 170 2 8 chr11 93963466 93964480 -56819073 + (CATTC)n Satellite Satellite 1 1007 0 210 189 0 0 chr11 93964592 93964629 -56818924 - L3 LINE CR1 -309 1268 1232 2510 68 0 0 chr11 93966497 93966804 -56816749 + AluY SINE Alu 1 307 -4 987 151 2 3 chr11 93967517 93968016 -56815537 + (CATTC)n Satellite Satellite 1 498 0 909 181 0 2 chr11 93968032 93969273 -56814280 + (CATTC)n Satellite Satellite 1 1238 0 417 190 0 0 chr11 93969312 93969412 -56814141 + (CATTC)n Satellite Satellite 4 103 0 480 205 0 0 chr11 93969447 93969613 -56813940 + (CATTC)n Satellite Satellite 4 169 0 622 180 4 4 chr11 93969672 93969923 -56813630 + (CATTC)n Satellite Satellite 1 251 0 879 142 0 0 chr11 93969949 93970178 -56813375 + (CATTC)n Satellite Satellite 1 229 0 999 131 3 0 chr11 93970264 93970588 -56812965 + (CATTC)n Satellite Satellite 1 325 0 674 170 0 11 chr11 93970643 93970825 -56812728 + (CATTC)n Satellite Satellite 1 180 0 599 194 0 14 chr11 93970858 93971297 -56812256 + (CATTC)n Satellite Satellite 1 433 0 798 175 2 0 chr11 93971347 93971999 -56811554 + (CATTC)n Satellite Satellite 1 653 0 756 161 0 27 chr11 93972070 93972445 -56811108 + (CATTC)n Satellite Satellite 1 365 0 647 218 8 8 chr11 93972693 93972826 -56810727 - FLAM_A SINE Alu 0 142 10 282 279 70 92 chr11 93973055 93973097 -56810456 - L2 LINE L2 -218 3054 3013 2047 108 54 0 chr11 93973097 93973376 -56810177 + AluSc SINE Alu 14 307 -2 282 279 70 92 chr11 93973376 93973562 -56809991 - L2 LINE L2 -259 3013 2831 474 200 215 0 chr11 93973887 93974017 -56809536 + MER103 DNA DNA 8 165 -1 540 273 69 56 chr11 93975492 93975723 -56807830 + MIR SINE MIR 29 262 0 827 101 28 28 chr11 93976039 93976218 -56807335 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 203 351 65 24 chr11 93976301 93976594 -56806959 - L2 LINE L2 -2315 999 695 339 113 0 0 chr11 93976824 93976886 -56806667 + (GA)n Simple_repeat Simple_repeat 1 62 0 1361 128 4 13 chr11 93977279 93977505 -56806048 + L1MA9 LINE L1 6089 6312 0 287 228 41 64 chr11 93977519 93977675 -56805878 - MIR SINE MIR -74 134 37 449 298 50 11 chr11 93978540 93978721 -56804832 + MER5A DNA MER1_type 1 188 -1 251 275 108 0 chr11 93979579 93979699 -56803854 + MIR SINE MIR 90 222 -40 195 365 66 7 chr11 93979698 93979835 -56803718 + MIR SINE MIR 67 211 -51 * 455 278 198 19 chr11 93980472 93980684 -56802869 - MIR SINE MIR 0 262 13 496 331 30 60 chr11 93981528 93981894 -56801659 + L2 LINE L2 2918 3272 0 938 162 13 7 chr11 93982011 93982165 -56801388 - Tigger2 DNA MER2_type 0 2718 2564 * 1181 151 29 10 chr11 93982164 93982370 -56801183 - Tigger2 DNA MER2_type -2508 210 1 798 241 244 6 chr11 93982744 93983096 -56800457 + LTR16A LTR ERVL 7 442 -8 308 265 29 29 chr11 93983210 93983312 -56800241 - MIR SINE MIR -56 152 51 327 244 89 0 chr11 93984769 93984859 -56798694 + MIR SINE MIR 46 143 -119 182 184 0 0 chr11 93985327 93985365 -56798188 + L2 LINE L2 2937 2974 -340 1418 265 108 7 chr11 93986998 93987564 -56795989 - L2 LINE L2 -1286 2028 1406 301 244 17 59 chr11 93987595 93987714 -56795839 + MIR SINE MIR 137 250 -12 220 251 120 46 chr11 93987931 93988106 -56795447 + MIR3 SINE MIR 10 197 -11 203 250 33 0 chr11 93988362 93988422 -56795131 - MER5A DNA MER1_type 0 189 128 253 238 175 0 chr11 93989090 93989170 -56794383 + L2 LINE L2 3217 3310 -3 289 269 65 11 chr11 93989232 93989325 -56794228 + L2 LINE L2 3151 3248 -24 421 289 118 0 chr11 93989782 93989917 -56793636 + MIR SINE MIR 6 156 -106 234 224 162 75 chr11 93989951 93989998 -56793555 - L1M4 LINE L1 -251 5927 5881 562 311 68 10 chr11 93989998 93990294 -56793259 - L1ME4a LINE L1 -262 5859 5547 518 243 316 9 chr11 93990626 93990769 -56792784 - LTR50 LTR ERVL -365 430 332 815 177 61 17 chr11 93990769 93990950 -56792603 + MER53 DNA DNA 1 189 0 518 243 316 9 chr11 93990950 93991135 -56792418 - LTR50 LTR ERVL -463 332 1 2160 127 0 9 chr11 93991211 93991526 -56792027 + AluSx SINE Alu 1 312 0 5338 291 55 8 chr11 93991746 93993727 -56789826 - ERVL LTR ERVL -191 5506 3363 275 217 12 84 chr11 93993888 93993971 -56789582 - ERVL LTR ERVL -2332 3322 3246 213 235 0 0 chr11 93995148 93995199 -56788354 + L2 LINE L2 3262 3312 -1 2132 100 10 39 chr11 93996636 93996947 -56786606 - AluSq SINE Alu -11 302 1 505 266 35 7 chr11 93997525 93997668 -56785885 - MIR SINE MIR -114 148 2 181 345 0 0 chr11 93997867 93997922 -56785631 - L2 LINE L2 -13 3259 3205 283 342 60 33 chr11 93999995 94000296 -56783257 + L2 LINE L2 2652 2960 -354 291 260 0 0 chr11 94002044 94002117 -56781436 + MIR SINE MIR 59 131 -77 328 206 0 39 chr11 94002353 94002455 -56781098 + L1MC5 LINE L1 7831 7928 -33 293 202 60 0 chr11 94002711 94002795 -56780758 - MIR SINE MIR -70 192 104 348 216 15 8 chr11 94004708 94004842 -56778711 + L1M4 LINE L1 3147 3281 -2865 198 330 34 17 chr11 94004843 94004961 -56778592 + L2 LINE L2 2862 2981 -291 886 180 53 96 chr11 94005068 94005269 -56778284 + L1ME1 LINE L1 2805 2988 -3158 1257 172 63 127 chr11 94005269 94005711 -56777842 + MLT2D LTR ERVL 1 414 0 886 180 53 96 chr11 94005711 94005831 -56777722 + L1ME1 LINE L1 2988 3112 -3034 4433 204 61 48 chr11 94005852 94007154 -56776399 + L1ME1 LINE L1 3457 4774 -1372 2218 148 50 27 chr11 94007155 94007559 -56775994 + L1PB4 LINE L1 5717 6129 -27 2205 108 0 0 chr11 94007650 94007962 -56775591 - AluSx SINE Alu 0 312 1 2337 88 0 0 chr11 94008092 94008386 -56775167 - AluSg SINE Alu -16 294 1 1871 180 3 3 chr11 94008771 94009082 -56774471 - AluJb SINE Alu -1 311 1 1795 188 7 3 chr11 94009680 94009988 -56773565 + 7SLRNA srpRNA srpRNA 12 320 0 1865 169 3 10 chr11 94010731 94011032 -56772521 - AluJb SINE Alu -13 299 1 1169 175 71 79 chr11 94011127 94011505 -56772048 + L1ME1 LINE L1 4898 5272 -874 297 167 0 0 chr11 94011513 94011567 -56771986 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 2797 188 28 73 chr11 94011570 94011692 -56771861 + L1ME1 LINE L1 5266 5392 -774 2047 124 13 10 chr11 94011692 94011991 -56771562 + AluSx SINE Alu 1 300 -12 2797 188 28 73 chr11 94011991 94012149 -56771404 + L1ME1 LINE L1 5392 5555 -611 2190 118 3 10 chr11 94012149 94012455 -56771098 + AluSq SINE Alu 1 304 -9 2797 188 28 73 chr11 94012455 94012746 -56770807 + L1ME1 LINE L1 5555 5800 -366 2290 118 0 0 chr11 94012746 94013043 -56770510 + AluSg SINE Alu 1 297 -13 2797 188 28 73 chr11 94013043 94013213 -56770340 + L1ME1 LINE L1 5800 5976 -190 578 191 23 15 chr11 94013225 94013356 -56770197 + L1MA10 LINE L1 6192 6323 -11 2307 103 7 0 chr11 94013382 94013683 -56769870 - AluSq SINE Alu -10 303 1 461 147 314 10 chr11 94013683 94013785 -56769768 - Looper DNA T2_type -1422 136 4 1235 189 80 64 chr11 94013808 94014246 -56769307 + L1MC5 LINE L1 6928 7372 -589 1002 234 44 61 chr11 94014262 94014422 -56769131 + L1MC5 LINE L1 7506 7667 -294 1673 159 3 64 chr11 94014422 94014736 -56768817 + AluJb SINE Alu 1 295 -17 234 0 0 0 chr11 94014736 94014762 -56768791 + (TA)n Simple_repeat Simple_repeat 2 27 0 1802 171 17 3 chr11 94014767 94015065 -56768488 + AluJo SINE Alu 1 302 -10 1002 234 44 61 chr11 94015065 94015325 -56768228 + L1MC5 LINE L1 7670 7926 -35 371 252 57 118 chr11 94015409 94015656 -56767897 - L1M4 LINE L1 -2454 3692 3431 2584 60 0 0 chr11 94015656 94015956 -56767597 - AluY SINE Alu -11 300 1 371 252 57 118 chr11 94015956 94016189 -56767364 - L1M4 LINE L1 -2715 3431 3256 1880 124 4 4 chr11 94016189 94016456 -56767097 - AluSx SINE Alu -45 267 1 371 252 57 118 chr11 94016456 94016592 -56766961 - L1M4 LINE L1 -2890 3256 3113 504 141 12 0 chr11 94016637 94016722 -56766831 - AluSg/x SINE Alu -11 301 216 2440 88 3 0 chr11 94016887 94017195 -56766358 + AluY SINE Alu 1 309 -2 183 42 0 0 chr11 94017198 94017222 -56766331 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 348 117 60 46 chr11 94017466 94017981 -56765572 + (TA)n Simple_repeat Simple_repeat 1 522 0 2286 78 3 7 chr11 94017981 94018277 -56765276 - AluY SINE Alu -16 295 1 2047 131 6 13 chr11 94018950 94019264 -56764289 + AluSq SINE Alu 1 312 -1 1969 120 41 0 chr11 94019317 94019609 -56763944 + AluSp SINE Alu 1 304 -9 1838 171 0 0 chr11 94019695 94019994 -56763559 + AluJb SINE Alu 1 299 -13 1242 224 84 50 chr11 94020034 94020179 -56763374 - MER82 DNA MER2_type -1 652 513 2202 122 3 0 chr11 94020179 94020482 -56763071 + AluSx SINE Alu 1 304 -8 1242 224 84 50 chr11 94020482 94020715 -56762838 - MER82 DNA MER2_type -140 513 261 192 296 0 0 chr11 94022262 94022306 -56761247 + MIR SINE MIR 207 250 -12 246 197 53 26 chr11 94023014 94023090 -56760463 - MIR SINE MIR -52 210 133 639 299 30 6 chr11 94023255 94023419 -56760134 + MIR SINE MIR 60 227 -35 793 250 73 10 chr11 94023910 94024114 -56759439 + MIR SINE MIR 39 255 -7 503 276 123 46 chr11 94024586 94024847 -56758706 + L3 LINE CR1 1296 1576 -1 4348 179 74 89 chr11 94025657 94025920 -56757633 + L1MB8 LINE L1 3928 4193 -1953 2139 114 7 19 chr11 94025920 94026228 -56757325 - AluSx SINE Alu -8 304 1 4348 179 74 89 chr11 94026228 94026469 -56757084 + L1MB8 LINE L1 4193 4436 -1710 2180 144 60 38 chr11 94026469 94026886 -56756667 + MSTB LTR MaLR 1 426 0 4348 179 74 89 chr11 94026886 94027179 -56756374 + L1MB8 LINE L1 4436 4732 -1414 567 119 0 0 chr11 94027179 94027263 -56756290 + AluS SINE Alu 1 84 -228 4348 179 74 89 chr11 94027263 94027778 -56755775 + L1MB8 LINE L1 4732 5304 -842 2522 68 3 0 chr11 94027780 94028087 -56755466 + AluSg SINE Alu 2 309 -1 672 205 0 8 chr11 94028114 94028231 -56755322 + FLAM_A SINE Alu 9 124 -18 1403 213 60 38 chr11 94028267 94028667 -56754886 - MLT1C LTR MaLR -2 465 57 1522 162 129 0 chr11 94028722 94029214 -56754339 + L1MB8 LINE L1 5336 5930 -235 255 257 0 0 chr11 94029414 94029515 -56754038 + CT-rich Low_complexity Low_complexity 1 101 0 1524 244 121 4 chr11 94030498 94030978 -56752575 + MLT1H LTR MaLR 8 543 -6 2260 88 7 10 chr11 94031011 94031306 -56752247 - AluSq SINE Alu -19 294 1 321 247 0 24 chr11 94031342 94031427 -56752126 + MLT1L LTR MaLR 1 83 -532 1347 126 0 0 chr11 94031592 94031774 -56751779 + AluJb SINE Alu 129 310 -2 641 221 0 0 chr11 94031781 94031894 -56751659 + FRAM SINE Alu 1 112 -64 490 122 12 24 chr11 94031936 94032018 -56751535 + AluJ/FRAM SINE Alu 219 299 -13 239 296 0 0 chr11 94032070 94032124 -56751429 + MLT1L LTR MaLR 351 404 -211 1315 128 67 104 chr11 94032132 94032430 -56751123 + AluJb SINE Alu 11 297 -15 672 241 64 18 chr11 94032438 94032658 -56750895 + MLT1L LTR MaLR 386 615 0 546 281 0 0 chr11 94032661 94032782 -56750771 + L2 LINE L2 3187 3307 -6 240 59 0 0 chr11 94033049 94033083 -56750470 + (T)n Simple_repeat Simple_repeat 1 34 0 318 206 175 0 chr11 94033283 94033380 -56750173 - MER58B DNA MER1_type 0 341 228 277 305 94 0 chr11 94033373 94033501 -56750052 + MLT1L LTR MaLR 476 615 0 * 701 200 23 0 chr11 94033687 94033817 -56749736 - MER5A DNA MER1_type 0 189 57 489 139 175 36 chr11 94033820 94033957 -56749596 - MER53 DNA DNA -3 186 31 368 200 0 27 chr11 94033968 94034043 -56749510 - MER5A DNA MER1_type -116 73 1 567 271 91 8 chr11 94034240 94034447 -56749106 + MIR SINE MIR 27 246 -16 2299 113 7 0 chr11 94034484 94034793 -56748760 + AluSx SINE Alu 1 311 -1 901 195 23 0 chr11 94034827 94035001 -56748552 + MER5A DNA MER1_type 12 189 0 192 324 44 0 chr11 94035213 94035281 -56748272 - L2 LINE L2 -1 3312 3242 2283 111 0 0 chr11 94035295 94035592 -56747961 + AluSx SINE Alu 1 297 -15 1645 159 83 0 chr11 94036620 94036896 -56746657 - AluJo SINE Alu -12 300 2 1918 116 78 0 chr11 94037006 94037290 -56746263 + AluSp SINE Alu 1 306 -7 776 167 108 54 chr11 94037805 94037990 -56745563 - MER112 DNA MER1_type -3 253 51 2609 52 0 0 chr11 94037990 94038298 -56745255 - AluY SINE Alu -3 308 1 776 167 108 54 chr11 94038298 94038352 -56745201 - MER112 DNA MER1_type -205 51 1 2083 123 6 11 chr11 94038705 94039055 -56744498 + L1PA13 LINE L1 5815 6162 -1 427 244 122 0 chr11 94039993 94040149 -56743404 - L1MC4a LINE L1 -1925 5883 5709 252 114 0 0 chr11 94040367 94040402 -56743151 + U2 snRNA snRNA 1 35 -153 274 268 57 0 chr11 94040517 94040640 -56742913 + L1ME4a LINE L1 5991 6120 -1 1753 185 3 25 chr11 94040668 94040982 -56742571 + AluJb SINE Alu 1 307 -5 1337 96 0 11 chr11 94042775 94042952 -56740601 + AluSp SINE Alu 139 313 0 326 277 189 25 chr11 94043037 94043196 -56740357 + MIR SINE MIR 4 188 -74 283 304 0 0 chr11 94043766 94043835 -56739718 + L2 LINE L2 3245 3313 0 332 280 177 48 chr11 94044568 94044754 -56738799 - MIR SINE MIR -6 256 47 1555 192 17 27 chr11 94044757 94045049 -56738504 + AluJo SINE Alu 1 289 -23 386 359 72 0 chr11 94045687 94045854 -56737699 + MIR3 SINE MIR 19 197 -11 2169 71 0 0 chr11 94046328 94046596 -56736957 + AluY SINE Alu 34 301 -10 252 333 34 8 chr11 94046846 94046963 -56736590 + L2 LINE L2 2882 3001 -271 248 255 94 81 chr11 94047515 94047664 -56735889 + L2 LINE L2 3141 3291 -22 2683 231 45 40 chr11 94047862 94048612 -56734941 - MER21B LTR ERV1 -109 754 1 320 350 91 75 chr11 94049219 94049539 -56734014 - L2 LINE L2 0 3272 2948 4674 132 88 14 chr11 94049975 94050128 -56733425 + L1P4 LINE L1 4242 4382 -1786 252 0 0 0 chr11 94050128 94050156 -56733397 + (CA)n Simple_repeat Simple_repeat 1 28 0 4674 132 88 14 chr11 94050156 94051118 -56732435 + L1P4 LINE L1 4382 5472 -696 2122 138 3 0 chr11 94051118 94051408 -56732145 - AluSx SINE Alu -21 291 1 4674 132 88 14 chr11 94051408 94051571 -56731982 + L1P4 LINE L1 5472 5622 -546 1087 153 4 1 chr11 94051676 94055092 -56728461 + ALR/Alpha Satellite centromeric 1 3427 -68 513 349 103 19 chr11 94055204 94055582 -56727971 - L2 LINE L2 -638 2676 2267 2059 155 0 13 chr11 94056705 94057021 -56726532 + AluJb SINE Alu 1 312 0 1977 160 20 0 chr11 94057401 94057707 -56725846 + AluSx SINE Alu 1 312 0 358 254 149 41 chr11 94058172 94058589 -56724964 + L1ME4a LINE L1 5646 6107 -14 568 280 35 23 chr11 94059034 94059291 -56724262 + MIR SINE MIR 2 261 -1 637 168 0 61 chr11 94059439 94059570 -56723983 - FLAM_A SINE Alu -10 123 1 526 230 55 18 chr11 94059918 94060094 -56723459 + MER20B DNA MER1_type 30 214 -5 1295 184 155 40 chr11 94060262 94060610 -56722943 + MLT2D LTR ERVL 27 414 0 2347 97 0 6 chr11 94061592 94061903 -56721650 + AluSg SINE Alu 1 309 -1 1051 90 0 0 chr11 94062026 94062160 -56721393 + AluSg/x SINE Alu 172 305 -5 535 172 46 7 chr11 94062526 94062677 -56720876 + GA-rich Low_complexity Low_complexity 4 160 0 387 190 35 17 chr11 94062797 94062913 -56720640 + GA-rich Low_complexity Low_complexity 3 120 0 490 262 187 28 chr11 94062944 94063158 -56720395 + MIR SINE MIR 5 252 -10 849 148 31 0 chr11 94063513 94063724 -56719829 + FLAM_C SINE Alu 1 215 0 381 363 121 8 chr11 94063889 94064137 -56719416 + L2 LINE L2 2378 2653 -661 318 235 82 0 chr11 94064281 94064366 -56719187 + FLAM_A SINE Alu 35 126 -7 2113 79 40 0 chr11 94064382 94064660 -56718893 + AluY SINE Alu 1 289 -22 1480 136 0 0 chr11 94064764 94064970 -56718583 - AluSq SINE Alu -107 206 1 1067 161 136 42 chr11 94065059 94065295 -56718258 - AluJo SINE Alu -14 298 41 599 235 23 0 chr11 94065352 94065484 -56718069 - Tigger3(Golem) DNA MER2_type -2894 135 1 674 300 42 13 chr11 94065841 94066078 -56717475 + MIR SINE MIR 12 255 -7 186 118 0 0 chr11 94066179 94066213 -56717340 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 1591 146 79 18 chr11 94066220 94066500 -56717053 - AluJo SINE Alu -14 298 2 438 226 81 24 chr11 94066608 94066732 -56716821 + L2 LINE L2 3137 3267 -5 703 247 27 11 chr11 94066785 94066971 -56716582 + MER5A DNA MER1_type 1 189 0 2082 136 7 0 chr11 94067027 94067328 -56716225 - AluSq SINE Alu -10 303 1 1352 153 10 50 chr11 94067418 94067718 -56715835 + L1ME2 LINE L1 5855 6142 -22 305 284 35 97 chr11 94067817 94068094 -56715459 + L2 LINE L2 2792 3050 -222 622 326 23 6 chr11 94068135 94068307 -56715246 + MER91A DNA MER1_type 5 179 -17 274 301 151 0 chr11 94068303 94068396 -56715157 + MER91A DNA MER1_type 90 196 0 * 517 280 69 17 chr11 94068410 94068585 -56714968 + L2 LINE L2 3122 3305 -8 2298 109 0 3 chr11 94068595 94068899 -56714654 - AluSq SINE Alu -10 303 1 201 285 0 123 chr11 94068925 94069055 -56714498 + L2 LINE L2 3194 3307 -6 313 340 9 57 chr11 94069102 94069314 -56714239 + L3b LINE CR1 1246 1447 -136 728 200 65 43 chr11 94069419 94069649 -56713904 - L1MD3 LINE L1 -1 7994 7760 369 202 172 44 chr11 94069798 94069914 -56713639 + MIR SINE MIR 57 187 -21 599 256 0 8 chr11 94069967 94070096 -56713457 - FLAM_A SINE Alu -5 128 1 1281 174 78 11 chr11 94070214 94070577 -56712976 + MER31B LTR ERV1 38 464 -2 194 209 47 0 chr11 94071035 94071078 -56712475 + MIR SINE MIR 206 250 -12 191 172 17 121 chr11 94071409 94071467 -56712086 - MIR3 SINE MIR -54 154 103 23 33 0 0 chr11 94072615 94072645 -56710908 + GC_rich Low_complexity Low_complexity 1 30 0 210 219 0 0 chr11 94072703 94072744 -56710809 + (CGG)n Simple_repeat Simple_repeat 3 43 0 698 249 93 18 chr11 94074161 94074386 -56709167 + MIR SINE MIR 18 259 -3 1009 204 139 36 chr11 94074693 94075081 -56708472 - Charlie4a DNA MER1_type -64 444 17 600 213 120 78 chr11 94075895 94076139 -56707414 - LTR37A LTR ERV1 -53 373 108 1448 160 86 11 chr11 94076139 94076407 -56707146 + AluJb SINE Alu 1 288 -24 600 213 120 78 chr11 94076407 94076519 -56707034 - LTR37A LTR ERV1 -318 108 2 29 28 0 0 chr11 94078313 94078349 -56705204 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr11 94080148 94080171 -56703382 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1402 208 48 0 chr11 94080182 94080451 -56703102 - AluJb SINE Alu -30 282 1 490 79 0 0 chr11 94081169 94081232 -56702321 + Alu SINE Alu 1 63 -255 2266 100 0 16 chr11 94081570 94081879 -56701674 - AluSc SINE Alu -3 306 3 2310 100 0 3 chr11 94081884 94082183 -56701370 - AluSc SINE Alu -11 298 1 231 167 21 0 chr11 94082183 94082231 -56701322 - Alu SINE Alu -166 136 88 462 244 130 8 chr11 94083370 94083501 -56700052 + MER58A DNA MER1_type 1 147 0 312 245 42 146 chr11 94084269 94084380 -56699173 + MER5B DNA MER1_type 6 90 -88 1195 182 144 15 chr11 94084380 94084528 -56699025 - AluJo SINE Alu -2 300 172 303 28 0 0 chr11 94084528 94084564 -56698989 + (TG)n Simple_repeat Simple_repeat 1 36 0 1195 182 144 15 chr11 94084564 94084679 -56698874 - AluJo SINE Alu -130 172 3 312 245 42 146 chr11 94084679 94084759 -56698794 + MER5B DNA MER1_type 90 177 -1 1953 158 92 10 chr11 94084966 94085377 -56698176 + MER65A LTR ERV1 1 445 0 529 123 0 0 chr11 94085391 94085472 -56698081 - L1PA12 LINE L1 -115 6053 5973 2259 121 0 6 chr11 94085882 94086197 -56697356 - AluSp SINE Alu 0 313 1 225 0 0 0 chr11 94086199 94086224 -56697329 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2096 102 0 3 chr11 94086224 94086509 -56697044 - AluSx SINE Alu -28 284 1 1619 178 33 13 chr11 94086589 94086685 -56696868 + L1M4 LINE L1 5157 5250 -928 1349 165 124 26 chr11 94086685 94086958 -56696595 - AluJo SINE Alu -1 301 2 1619 178 33 13 chr11 94086958 94087299 -56696254 + L1M4 LINE L1 5250 5601 -577 1690 181 3 26 chr11 94087559 94087862 -56695691 - AluJo SINE Alu -8 304 9 558 221 25 3 chr11 94088269 94088413 -56695140 - MSTD LTR MaLR -265 131 1 2632 267 83 27 chr11 94088442 94089398 -56694155 - MSTD-int LTR MaLR -134 1513 510 848 160 0 0 chr11 94089398 94089523 -56694030 - FLAM_C SINE Alu -8 125 1 2632 267 83 27 chr11 94089523 94089791 -56693762 - MSTD-int LTR MaLR -1137 510 259 403 198 0 38 chr11 94089791 94089897 -56693656 - AluSg/x SINE Alu -3 309 208 277 226 0 0 chr11 94089897 94089950 -56693603 + MSTD LTR MaLR 236 288 -108 1385 141 5 0 chr11 94089952 94090151 -56693402 - AluJb SINE Alu -112 200 1 1790 171 31 0 chr11 94090155 94090447 -56693106 - AluJo SINE Alu -11 301 1 1309 192 24 50 chr11 94090447 94090785 -56692768 - MSTD-int LTR MaLR -1402 333 5 350 83 0 0 chr11 94090790 94090838 -56692715 - MSTD LTR MaLR 0 396 349 858 197 0 0 chr11 94090885 94091022 -56692531 - AluJo SINE Alu -175 137 1 730 207 79 24 chr11 94091022 94091333 -56692220 - MSTD LTR MaLR -43 352 1 28 0 0 0 chr11 94091779 94091807 -56691746 + AT_rich Low_complexity Low_complexity 1 28 0 292 310 23 0 chr11 94092762 94092849 -56690704 + MIR3 SINE MIR 77 165 -43 237 301 81 24 chr11 94094627 94094750 -56688803 - MIR3 SINE MIR -10 198 69 2049 81 42 49 chr11 94094933 94095240 -56688313 - AluSq SINE Alu -4 309 5 348 24 0 0 chr11 94095936 94095977 -56687576 + (TG)n Simple_repeat Simple_repeat 1 41 0 382 192 77 0 chr11 94096242 94096320 -56687233 - MER58A DNA MER1_type -23 84 1 1327 176 142 12 chr11 94096340 94096664 -56686889 - MER47A DNA MER2_type 0 366 1 222 62 0 0 chr11 94096665 94096697 -56686856 + (TG)n Simple_repeat Simple_repeat 2 33 0 308 252 76 0 chr11 94096725 94096844 -56686709 - MER69 DNA AcHobo -426 2100 1973 435 248 47 0 chr11 94096890 94097039 -56686514 - L1MD3 LINE L1 -8 7987 7832 4781 194 82 40 chr11 94097073 94098947 -56684606 - L1MD1 LINE L1 -293 6343 4549 180 0 0 0 chr11 94098947 94098967 -56684586 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 4781 194 82 40 chr11 94098967 94099397 -56684156 - L1MD1 LINE L1 -2087 4549 4139 1999 113 38 3 chr11 94099397 94099688 -56683865 - AluSx SINE Alu -11 301 1 4781 194 82 40 chr11 94099688 94099896 -56683657 - L1MD1 LINE L1 -2497 4139 3700 868 151 107 44 chr11 94099901 94100107 -56683446 - AluJo SINE Alu -13 299 81 381 206 91 20 chr11 94100151 94100285 -56683268 - L1MD1 LINE L1 -2887 3653 3499 2419 80 0 3 chr11 94100285 94100597 -56682956 - AluY SINE Alu 0 311 1 381 206 91 20 chr11 94100597 94100661 -56682892 - L1MD1 LINE L1 -3041 3499 3441 3433 211 131 51 chr11 94100662 94101267 -56682286 - L1MD1 LINE L1 -3393 3147 2592 1527 209 7 3 chr11 94101267 94101550 -56682003 - AluJo SINE Alu -16 296 13 3433 211 131 51 chr11 94101550 94103266 -56680287 - L1MD1 LINE L1 -3948 2592 233 204 40 0 0 chr11 94103266 94103291 -56680262 + (TTG)n Simple_repeat Simple_repeat 3 27 0 3433 211 131 51 chr11 94103291 94103525 -56680028 - L1MD1 LINE L1 -6307 233 19 494 283 72 20 chr11 94103622 94103774 -56679779 - MER5B DNA MER1_type -2 176 17 180 254 56 70 chr11 94103871 94103942 -56679611 - MER5A DNA MER1_type -28 161 92 222 141 62 94 chr11 94104209 94104273 -56679280 + MER91B DNA MER1_type 1 62 -128 555 184 26 18 chr11 94104280 94104394 -56679159 - MER20 DNA MER1_type -1 218 104 22 35 0 0 chr11 94106461 94106490 -56677063 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 94106953 94106974 -56676579 + AT_rich Low_complexity Low_complexity 1 21 0 734 274 121 0 chr11 94107091 94107306 -56676247 + MIR SINE MIR 5 245 -17 1025 176 20 0 chr11 94108126 94108325 -56675228 - Looper DNA T2_type -598 960 758 1360 132 9 27 chr11 94108326 94108546 -56675007 - AluSg/x SINE Alu -12 298 83 419 276 31 16 chr11 94108692 94108819 -56674734 - MER21B LTR ERV1 -721 142 14 436 153 122 0 chr11 94108879 94108977 -56674576 - L1MA7 LINE L1 -7 6284 6175 * 2496 163 61 21 chr11 94108966 94109536 -56674017 - L1 LINE L1 -2056 4090 3498 1115 158 168 18 chr11 94109538 94109897 -56673656 - L1 LINE L1 -2822 3324 2928 829 184 0 31 chr11 94109897 94110060 -56673493 - FAM SINE Alu -17 158 1 1115 158 168 18 chr11 94110060 94110106 -56673447 - L1 LINE L1 -3218 2928 2890 436 206 172 13 chr11 94110225 94110458 -56673095 - L1MC5 LINE L1 -50 7911 7642 288 296 35 0 chr11 94110673 94110788 -56672765 - L1ME LINE L1 -331 5790 5672 884 130 104 0 chr11 94110935 94111089 -56672464 - MER58A DNA MER1_type -15 209 40 1205 170 0 21 chr11 94111091 94111285 -56672268 + AluJo SINE Alu 5 194 -118 235 268 0 18 chr11 94111299 94111355 -56672198 - MER58A DNA MER1_type -168 56 2 29 0 0 0 chr11 94111504 94111533 -56672020 + AT_rich Low_complexity Low_complexity 1 29 0 574 263 89 19 chr11 94111581 94111794 -56671759 + L2 LINE L2 3055 3282 -31 748 220 62 26 chr11 94111869 94112142 -56671411 + L1MEd LINE L1 900 1182 -4937 336 162 222 20 chr11 94113012 94113069 -56670484 - MER45 DNA AcHobo 0 1581 1537 2189 133 3 0 chr11 94113069 94113377 -56670176 + AluSx SINE Alu 1 309 -3 2041 151 0 6 chr11 94113377 94113689 -56669864 + AluJo SINE Alu 1 310 -2 336 162 222 20 chr11 94113689 94113729 -56669824 - MER45 DNA AcHobo -43 1538 1463 1738 176 0 4 chr11 94113832 94114110 -56669443 - AluJb SINE Alu -35 277 1 362 219 133 9 chr11 94114474 94114579 -56668974 + MLT1D LTR MaLR 1 118 -387 2314 105 0 3 chr11 94115113 94115417 -56668136 - AluSx SINE Alu -9 303 1 796 256 59 31 chr11 94116308 94116562 -56666991 - MIR SINE MIR 0 262 2 247 339 85 61 chr11 94118221 94118386 -56665167 + MIR SINE MIR 2 170 -38 731 150 18 0 chr11 94118482 94118595 -56664958 + AluSg/x SINE Alu 178 292 -20 27 0 0 0 chr11 94118629 94118656 -56664897 + AT_rich Low_complexity Low_complexity 1 27 0 939 210 26 10 chr11 94118750 94118945 -56664608 - AluJo SINE Alu -9 303 106 229 283 185 29 chr11 94119069 94119242 -56664311 - L2 LINE L2 -2 3311 3112 337 348 94 0 chr11 94119505 94119643 -56663910 - MER5B DNA MER1_type -2 176 26 189 215 204 75 chr11 94119710 94119803 -56663750 + L2 LINE L2 3168 3272 0 2150 125 3 3 chr11 94119833 94120144 -56663409 - AluSx SINE Alu -1 311 1 455 324 142 13 chr11 94120565 94120790 -56662763 - MIR SINE MIR -2 260 7 288 0 0 0 chr11 94121170 94121202 -56662351 + (CA)n Simple_repeat Simple_repeat 2 33 0 528 250 101 34 chr11 94121302 94121510 -56662043 - MER21B LTR ERV1 -53 810 589 5396 143 36 18 chr11 94121520 94122460 -56661093 - L1MA9 LINE L1 -5 6307 5351 2465 176 18 7 chr11 94122598 94123046 -56660507 - L1MB7 LINE L1 -256 5928 5476 290 235 152 62 chr11 94123030 94123273 -56660280 - L1ME4a LINE L1 -227 5894 5630 * 2341 136 28 0 chr11 94123436 94123790 -56659763 - THE1B LTR MaLR 0 364 1 2101 133 0 7 chr11 94123815 94124116 -56659437 - AluSx SINE Alu -13 299 1 1860 152 10 10 chr11 94124299 94124595 -56658958 + AluSx SINE Alu 1 296 -16 687 309 97 30 chr11 94124738 94125171 -56658382 + L2 LINE L2 2035 2496 -818 273 339 124 11 chr11 94125830 94126007 -56657546 - MIR SINE MIR 0 262 66 731 125 17 42 chr11 94126129 94126249 -56657304 - MER45A DNA AcHobo -4 174 58 291 114 0 45 chr11 94126280 94126324 -56657229 - MLT1D LTR MaLR -459 46 5 328 271 199 13 chr11 94126694 94126845 -56656708 + MIR SINE MIR 65 243 -19 230 265 103 15 chr11 94127028 94127096 -56656457 + L2 LINE L2 3190 3263 -9 214 258 53 76 chr11 94127798 94127930 -56655623 + MIR SINE MIR 60 188 -74 292 254 123 16 chr11 94127982 94128104 -56655449 - MIR SINE MIR -99 163 29 291 191 147 0 chr11 94128213 94128281 -56655272 - MIR SINE MIR -64 144 67 197 325 53 92 chr11 94128508 94128714 -56654839 + L2 LINE L2 2780 2977 -337 194 0 39 0 chr11 94130594 94130620 -56652933 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 295 218 27 36 chr11 94130921 94131011 -56652542 + MLT1J LTR MaLR 237 407 -194 569 258 64 73 chr11 94131392 94131912 -56651641 + L1ME4a LINE L1 5518 6027 -94 5989 141 9 37 chr11 94132014 94133032 -56650521 + L1MC1 LINE L1 5345 6333 0 1834 157 0 50 chr11 94133066 94133384 -56650169 - AluJo SINE Alu -9 303 2 182 342 66 66 chr11 94133615 94133811 -56649742 - L2 LINE L2 -222 3050 2855 279 130 0 0 chr11 94134068 94134115 -56649438 - FRAM/FAM SINE Alu -84 82 46 241 323 186 0 chr11 94134446 94134570 -56648983 + MIR3 SINE MIR 40 186 -22 273 227 239 0 chr11 94135589 94135677 -56647876 - MLT1I LTR MaLR 0 409 301 * 406 295 29 0 chr11 94135672 94135811 -56647742 - MLT1I LTR MaLR -266 143 1 2228 38 52 24 chr11 94136091 94136380 -56647173 - AluY SINE Alu -14 297 1 198 171 0 0 chr11 94137091 94137132 -56646421 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 1819 154 35 0 chr11 94137190 94137476 -56646077 + AluSx SINE Alu 1 296 -16 1961 161 0 7 chr11 94138168 94138472 -56645081 - AluSx SINE Alu -10 302 1 207 209 0 0 chr11 94138670 94138713 -56644840 + L2 LINE L2 3264 3306 -7 918 153 0 0 chr11 94139191 94139328 -56644225 + FRAM SINE Alu 1 137 -39 21 71 0 0 chr11 94139343 94139385 -56644168 + AT_rich Low_complexity Low_complexity 1 42 0 2035 237 49 64 chr11 94139855 94140183 -56643370 + MER21B LTR ERV1 1 317 -546 2712 39 0 0 chr11 94140183 94140488 -56643065 + AluY SINE Alu 1 305 -6 2035 237 49 64 chr11 94140488 94140770 -56642783 + MER21B LTR ERV1 317 602 -261 3089 155 2 58 chr11 94140771 94141377 -56642176 + L1 LINE L1 4760 5331 -815 839 120 0 0 chr11 94141377 94141485 -56642068 + AluSp SINE Alu 1 108 -205 1468 223 27 3 chr11 94141841 94142156 -56641397 + AluJb SINE Alu 6 312 0 277 297 0 0 chr11 94142999 94143073 -56640480 + L2 LINE L2 3235 3308 -5 2298 116 0 0 chr11 94143354 94143664 -56639889 - AluSx SINE Alu -2 310 1 290 346 107 26 chr11 94143737 94143971 -56639582 + L2 LINE L2 2719 2971 -343 321 262 79 68 chr11 94144002 94144281 -56639272 + L2 LINE L2 2965 3246 -67 189 306 97 0 chr11 94144288 94144360 -56639193 - MIR SINE MIR -54 208 130 2361 105 0 0 chr11 94144527 94144832 -56638721 - AluSx SINE Alu -7 305 1 259 253 0 63 chr11 94144853 94144948 -56638605 + MIR SINE MIR 122 210 -52 1508 122 36 27 chr11 94145011 94145233 -56638320 - AluSx SINE Alu -88 224 1 464 246 194 19 chr11 94145577 94145788 -56637765 + MIR SINE MIR 7 254 -8 392 292 51 7 chr11 94146682 94146819 -56636734 + MIR SINE MIR 85 227 -35 2196 85 43 0 chr11 94146861 94147142 -56636411 + AluSp SINE Alu 1 293 -20 228 368 0 26 chr11 94148176 94148290 -56635263 + L2 LINE L2 3191 3301 -12 638 315 65 34 chr11 94148664 94148956 -56634597 + L3 LINE CR1 1276 1576 -1 228 314 29 19 chr11 94149055 94149160 -56634393 + L2 LINE L2 3163 3268 -4 224 262 24 71 chr11 94149661 94149745 -56633808 + MIR SINE MIR 18 97 -111 274 328 40 25 chr11 94149843 94150041 -56633512 - L2 LINE L2 -746 2568 2368 1740 170 13 35 chr11 94150867 94151178 -56632375 - AluJo SINE Alu -8 304 1 2038 141 0 0 chr11 94151178 94151468 -56632085 - AluJb SINE Alu -22 290 1 303 217 192 25 chr11 94151503 94151623 -56631930 - L1ME4a LINE L1 0 6121 5982 464 286 22 0 chr11 94151659 94151800 -56631753 - MIR SINE MIR -59 149 32 22 0 0 0 chr11 94152784 94152806 -56630747 + AT_rich Low_complexity Low_complexity 1 22 0 2009 138 7 3 chr11 94152812 94153103 -56630450 - AluSx SINE Alu -20 292 1 2506 125 25 5 chr11 94153104 94153263 -56630290 - L1MA6 LINE L1 -350 5950 5796 186 43 0 0 chr11 94153263 94153286 -56630267 + (TA)n Simple_repeat Simple_repeat 2 24 0 2506 125 25 5 chr11 94153286 94153519 -56630034 - L1MA6 LINE L1 -504 5796 5550 404 337 34 31 chr11 94153965 94154315 -56629238 + LTR67 LTR ERVL 124 554 -3 326 323 51 21 chr11 94154427 94154613 -56628940 - MIR SINE MIR -46 216 31 197 250 21 0 chr11 94154667 94154715 -56628838 - L2 LINE L2 -3 3310 3262 1592 255 86 11 chr11 94154899 94155354 -56628199 + LTR16C LTR ERVL 3 491 0 200 303 97 40 chr11 94155612 94155787 -56627766 + L2 LINE L2 2866 3050 -222 207 274 95 24 chr11 94155936 94156020 -56627533 + L2 LINE L2 3138 3227 -45 250 288 45 36 chr11 94156038 94156149 -56627404 - MIR SINE MIR -121 141 30 363 312 88 0 chr11 94156703 94156828 -56626725 - LTR16A LTR ERVL -314 136 1 21 57 0 0 chr11 94156936 94156971 -56626582 + AT_rich Low_complexity Low_complexity 1 35 0 1006 280 73 42 chr11 94157170 94157341 -56626212 + L2 LINE L2 2691 2855 -458 1646 197 94 23 chr11 94157341 94157777 -56625776 - MLT1C LTR MaLR 0 467 1 1006 280 73 42 chr11 94157777 94158150 -56625403 + L2 LINE L2 2855 3312 -1 2203 92 7 0 chr11 94158422 94158734 -56624819 + AluSx SINE Alu 1 314 0 1618 199 19 6 chr11 94158995 94159311 -56624242 + MLT2D LTR ERVL 1 320 -94 2331 177 31 0 chr11 94159313 94159731 -56623822 + MSTB2 LTR MaLR 1 431 -26 428 140 0 158 chr11 94159809 94159923 -56623630 + MLT2D LTR ERVL 319 414 0 2311 94 37 0 chr11 94160312 94160610 -56622943 - AluSp SINE Alu -4 309 1 375 311 25 8 chr11 94160651 94160770 -56622783 + MIR3 SINE MIR 62 182 -26 2113 82 0 0 chr11 94160795 94161052 -56622501 - AluSx SINE Alu -1 311 55 2232 109 0 31 chr11 94161622 94161944 -56621609 - AluSx SINE Alu 0 312 1 227 333 33 8 chr11 94162029 94162149 -56621404 + MIR SINE MIR 30 152 -56 206 178 44 0 chr11 94162196 94162241 -56621312 + MIR SINE MIR 159 205 -57 294 329 100 26 chr11 94162906 94163158 -56620395 - L2 LINE L2 -236 3036 2804 745 241 35 10 chr11 94163158 94163357 -56620196 + MER105 DNA DNA 1 204 0 294 329 100 26 chr11 94163357 94163584 -56619969 - L2 LINE L2 -468 2804 2521 2151 138 0 0 chr11 94163691 94163987 -56619566 + AluSx SINE Alu 1 296 -16 388 189 16 74 chr11 94164421 94164543 -56619010 + MIR3 SINE MIR 88 202 -6 224 295 129 11 chr11 94165008 94165098 -56618455 + MIR SINE MIR 5 103 -105 315 0 0 0 chr11 94165109 94165144 -56618409 + (TG)n Simple_repeat Simple_repeat 1 35 0 186 71 0 0 chr11 94165144 94165172 -56618381 + (CAGAGA)n Simple_repeat Simple_repeat 2 29 0 2194 110 0 0 chr11 94165190 94165472 -56618081 - AluSx SINE Alu -30 282 1 270 282 13 0 chr11 94165474 94165552 -56618001 + MIR SINE MIR 110 188 -74 300 258 72 67 chr11 94166122 94166245 -56617308 - MIR3 SINE MIR -34 174 47 245 358 86 16 chr11 94166430 94166687 -56616866 - L2 LINE L2 -484 2830 2556 2340 155 10 0 chr11 94166724 94167110 -56616443 - L1MA5 LINE L1 -2 6298 5909 1719 166 0 11 chr11 94167594 94167865 -56615688 + AluSx SINE Alu 6 273 -39 600 83 0 0 chr11 94167889 94167973 -56615580 + AluY SINE Alu 2 85 -225 210 37 0 0 chr11 94168651 94168678 -56614875 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 506 295 44 11 chr11 94168841 94169024 -56614529 + MIR3 SINE MIR 17 205 -3 847 180 77 11 chr11 94170868 94171051 -56612502 + MIR SINE MIR 68 262 0 322 269 138 25 chr11 94171103 94171263 -56612290 - MER5B DNA MER1_type 0 178 1 194 143 0 0 chr11 94171266 94171301 -56612252 + L2 LINE L2 3279 3313 0 805 77 0 10 chr11 94171333 94171437 -56612116 + U6 snRNA snRNA 2 104 -3 1575 154 4 0 chr11 94171984 94172218 -56611335 + AluJo SINE Alu 1 235 -77 372 198 36 9 chr11 94172441 94172522 -56611031 + L1ME LINE L1 4497 4583 -1563 2189 131 3 0 chr11 94172522 94172819 -56610734 + AluSx SINE Alu 1 298 -14 372 198 36 9 chr11 94172819 94172848 -56610705 + L1ME LINE L1 4583 4610 -1536 445 294 52 19 chr11 94172904 94173270 -56610283 + L1ME LINE L1 5217 5595 -526 468 290 83 30 chr11 94173369 94173538 -56610015 + MIR SINE MIR 6 183 -79 538 161 0 0 chr11 94173549 94173636 -56609917 + AluJ/FLAM SINE Alu 2 88 -224 721 149 0 85 chr11 94173876 94174017 -56609536 + FLAM_C SINE Alu 1 129 -4 2197 127 7 0 chr11 94175266 94175574 -56607979 - AluSx SINE Alu -2 310 1 789 277 62 4 chr11 94175693 94175935 -56607618 - MIR SINE MIR -2 260 5 207 323 0 0 chr11 94176983 94177045 -56606508 - L2 LINE L2 -217 3055 2994 495 45 0 0 chr11 94177045 94177111 -56606442 + (TG)n Simple_repeat Simple_repeat 2 67 0 465 218 247 6 chr11 94177269 94177439 -56606114 + MIR SINE MIR 15 225 -37 1697 213 75 102 chr11 94178040 94178403 -56605150 + MLT1F LTR MaLR 7 351 -191 778 124 0 83 chr11 94178403 94178548 -56605005 + FLAM_C SINE Alu 1 133 0 1697 213 75 102 chr11 94178548 94178734 -56604819 + MLT1F LTR MaLR 351 541 -1 348 333 92 0 chr11 94178786 94178939 -56604614 + L2 LINE L2 3104 3270 -2 436 307 68 11 chr11 94178997 94179173 -56604380 - MIR SINE MIR -76 186 1 341 245 31 31 chr11 94180751 94180849 -56602704 + MIR SINE MIR 57 154 -108 1820 160 0 7 chr11 94180866 94181154 -56602399 - AluJb SINE Alu -26 286 1 2105 132 0 0 chr11 94181693 94181981 -56601572 - AluSx SINE Alu -24 288 1 403 273 135 100 chr11 94182669 94182980 -56600573 - L2 LINE L2 -13 3259 2938 6511 67 24 11 chr11 94183849 94184935 -56598618 + L1PA13 LINE L1 5048 6144 -19 666 223 0 8 chr11 94185387 94185508 -56598045 + FLAM_A SINE Alu 1 120 -13 686 204 13 0 chr11 94185510 94185667 -56597886 + (TATG)n Simple_repeat Simple_repeat 2 160 0 537 211 32 159 chr11 94186101 94186166 -56597387 - MIR SINE MIR 0 262 190 2256 104 0 0 chr11 94186166 94186453 -56597100 + AluSx SINE Alu 1 287 -25 537 211 32 159 chr11 94186453 94186638 -56596915 - MIR SINE MIR -72 190 44 623 103 0 0 chr11 94187035 94187122 -56596431 + AluSg1 SINE Alu 2 88 -221 550 319 34 4 chr11 94187468 94187703 -56595850 - MIR SINE MIR 0 262 21 378 0 0 0 chr11 94187715 94187757 -56595796 + (T)n Simple_repeat Simple_repeat 1 42 0 358 94 91 15 chr11 94187910 94188157 -56595396 + (TA)n Simple_repeat Simple_repeat 1 265 0 26 64 0 0 chr11 94188157 94188204 -56595349 + AT_rich Low_complexity Low_complexity 1 47 0 204 40 0 0 chr11 94188368 94188393 -56595160 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 29881 51 4 0 chr11 94188394 94192882 -56590671 - L1PA5 LINE L1 -16 6138 1635 2063 110 3 10 chr11 94193033 94193324 -56590229 - AluSq SINE Alu -8 305 17 272 274 57 28 chr11 94193563 94193669 -56589884 - L2 LINE L2 -179 3093 2985 185 238 188 25 chr11 94193986 94194066 -56589487 - L2 LINE L2 -558 2756 2664 1899 134 7 24 chr11 94194142 94194433 -56589120 + AluSx SINE Alu 1 286 -26 186 43 0 0 chr11 94194436 94194459 -56589094 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 296 261 102 76 chr11 94194548 94194601 -56588952 + MER105 DNA DNA 2 52 -152 589 251 21 27 chr11 94194601 94194788 -56588765 + MER5A DNA MER1_type 4 189 0 296 261 102 76 chr11 94194788 94194891 -56588662 + MER105 DNA DNA 52 162 -42 310 339 77 14 chr11 94194960 94195137 -56588416 + L1M2 LINE L1 2288 2483 -4366 2223 97 14 0 chr11 94195137 94195427 -56588126 - AluSp SINE Alu -19 294 1 310 339 77 14 chr11 94195427 94195470 -56588083 + L1M2 LINE L1 2483 2522 -4327 728 187 15 22 chr11 94195807 94195941 -56587612 + FLAM_A SINE Alu 1 133 0 2100 117 0 3 chr11 94196037 94196319 -56587234 + AluSx SINE Alu 1 281 -31 186 43 0 0 chr11 94196323 94196346 -56587207 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 357 24 0 0 chr11 94196577 94196619 -56586934 + (T)n Simple_repeat Simple_repeat 1 42 0 31 58 0 0 chr11 94196642 94196694 -56586859 + GC_rich Low_complexity Low_complexity 1 52 0 288 341 74 7 chr11 94197422 94197557 -56585996 + MIR SINE MIR 63 206 -56 543 294 160 29 chr11 94198596 94198970 -56584583 + L3 LINE CR1 1151 1573 -4 250 270 0 0 chr11 94199752 94199815 -56583738 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 2825 135 14 2 chr11 94199905 94200328 -56583225 + MSTA LTR MaLR 1 428 0 392 298 53 0 chr11 94200466 94200580 -56582973 + MIR3 SINE MIR 78 197 -11 216 0 0 0 chr11 94200670 94200694 -56582859 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 390 42 0 0 chr11 94200693 94200741 -56582812 + (GA)n Simple_repeat Simple_repeat 2 49 0 185 341 85 0 chr11 94201042 94201124 -56582429 - L2 LINE L2 -296 3017 2929 504 264 102 38 chr11 94201847 94202082 -56581471 - MIR SINE MIR 0 262 13 522 274 6 17 chr11 94202119 94202294 -56581259 + MIR SINE MIR 90 262 0 207 0 0 0 chr11 94203141 94203164 -56580389 + (A)n Simple_repeat Simple_repeat 1 23 0 2888 178 28 14 chr11 94203750 94204256 -56579297 + MLT2B2 LTR ERVL 1 513 -2 2234 124 0 13 chr11 94204625 94204939 -56578614 - AluSx SINE Alu -2 310 1 1671 191 6 22 chr11 94205855 94206169 -56577384 - AluJo SINE Alu -3 309 1 286 320 108 15 chr11 94206176 94206342 -56577211 + MER5B DNA MER1_type 7 175 -3 359 268 248 0 chr11 94206655 94206812 -56576741 - MER117 DNA MER1_type -1 196 1 320 298 19 0 chr11 94206921 94207025 -56576528 + L2 LINE L2 2174 2279 -1035 210 296 56 37 chr11 94207103 94207211 -56576342 + L2 LINE L2 3153 3262 -10 704 271 70 50 chr11 94207318 94207804 -56575749 + MLT1H LTR MaLR 1 537 -12 426 269 67 7 chr11 94209582 94209731 -56573822 + MIR SINE MIR 6 163 -99 773 279 175 49 chr11 94209762 94210317 -56573236 - L3 LINE CR1 -2 1575 951 * 2198 232 98 22 chr11 94210314 94211140 -56572413 + L2 LINE L2 820 1708 -1606 282 287 103 0 chr11 94211171 94211258 -56572295 - MIR SINE MIR -127 135 40 1010 182 36 62 chr11 94212554 94212712 -56570841 - MER20 DNA MER1_type 0 219 67 1826 185 0 7 chr11 94212712 94213015 -56570538 + AluJb SINE Alu 1 301 -11 1010 182 36 62 chr11 94213015 94213081 -56570472 - MER20 DNA MER1_type -152 67 1 219 167 0 0 chr11 94213168 94213210 -56570343 + CT-rich Low_complexity Low_complexity 2 43 0 288 254 0 14 chr11 94213238 94213309 -56570244 - L2 LINE L2 -21 3292 3223 389 284 52 13 chr11 94214055 94214210 -56569343 + MIR SINE MIR 54 214 -48 184 229 104 0 chr11 94214259 94214307 -56569246 - MIR SINE MIR -21 241 189 483 291 176 26 chr11 94214397 94214699 -56568854 + LTR16B LTR ERVL 109 455 -9 546 279 19 0 chr11 94214699 94214860 -56568693 - MIR SINE MIR -97 165 2 284 267 73 76 chr11 94215949 94216110 -56567443 - MIR SINE MIR -51 157 39 991 146 5 36 chr11 94216566 94216758 -56566795 - MER53 DNA DNA -3 186 1 387 248 101 16 chr11 94216889 94217018 -56566535 + MIR SINE MIR 29 168 -94 202 344 84 15 chr11 94217162 94217293 -56566260 - MIR3 SINE MIR -30 178 39 349 211 77 10 chr11 94218286 94218390 -56565163 + MIR3 SINE MIR 89 199 -9 536 200 55 0 chr11 94219159 94219304 -56564249 + MIR SINE MIR 2 154 -108 203 317 17 0 chr11 94219605 94219665 -56563888 + L2 LINE L2 3247 3307 -6 466 201 65 32 chr11 94219936 94220090 -56563463 + MIR SINE MIR 35 193 -69 210 333 33 0 chr11 94220602 94220692 -56562861 - MIR3 SINE MIR -21 187 95 2165 117 0 0 chr11 94220940 94221250 -56562303 + AluSx SINE Alu 1 310 0 771 299 69 6 chr11 94221349 94221683 -56561870 + L1ME4a LINE L1 5577 5931 -190 1968 142 0 10 chr11 94221781 94222090 -56561463 - AluSx SINE Alu -6 306 1 206 280 0 0 chr11 94223499 94223549 -56560004 - L2 LINE L2 -7 3265 3216 256 275 0 14 chr11 94223640 94223709 -56559844 - L2 LINE L2 0 3313 3246 201 330 94 52 chr11 94225207 94225613 -56557940 + L2 LINE L2 2555 2977 -337 212 323 120 28 chr11 94225854 94225981 -56557572 + MIR SINE MIR 14 128 -134 351 0 0 0 chr11 94225981 94226020 -56557533 + (TAA)n Simple_repeat Simple_repeat 3 41 0 212 323 120 28 chr11 94226020 94226109 -56557444 + MIR SINE MIR 128 250 -12 441 350 123 22 chr11 94226380 94226934 -56556619 + L2 LINE L2 2277 2886 -428 310 296 0 11 chr11 94227811 94227899 -56555654 + CT-rich Low_complexity Low_complexity 2 88 0 515 233 141 12 chr11 94227917 94228080 -56555473 + MIR SINE MIR 40 223 -39 1133 241 132 17 chr11 94228089 94228438 -56555115 + LTR16A LTR ERVL 7 395 -55 203 186 161 50 chr11 94229088 94229183 -56554370 + MIR SINE MIR 43 136 -72 2321 104 0 13 chr11 94229200 94229516 -56554037 - AluSx SINE Alu 0 312 1 2181 115 14 0 chr11 94229517 94229813 -56553740 - AluSx SINE Alu -12 300 1 543 245 34 72 chr11 94230146 94230354 -56553199 - Charlie8 DNA MER1_type -2185 232 33 259 293 208 9 chr11 94231297 94231403 -56552150 + MER91A DNA MER1_type 48 174 -22 195 283 38 0 chr11 94231469 94231522 -56552031 + L2 LINE L2 3214 3268 -4 1684 168 28 7 chr11 94232529 94232814 -56550739 + AluJb SINE Alu 6 296 -16 254 210 0 32 chr11 94233098 94233160 -56550393 + L2 LINE L2 3007 3066 -206 1290 249 103 59 chr11 94233786 94234192 -56549361 + MER115 DNA AcHobo 8 431 -262 249 33 0 0 chr11 94234221 94234251 -56549302 + (CA)n Simple_repeat Simple_repeat 1 30 0 849 255 98 86 chr11 94234256 94234766 -56548787 + L1ME LINE L1 103 618 -5452 21 36 0 0 chr11 94234807 94234835 -56548718 + AT_rich Low_complexity Low_complexity 1 28 0 1322 303 97 54 chr11 94234866 94235365 -56548188 + L2 LINE L2 1716 2192 -1080 1174 179 9 31 chr11 94235365 94235589 -56547964 - MER20 DNA MER1_type 0 219 1 1322 303 97 54 chr11 94235589 94236240 -56547313 + L2 LINE L2 2192 2940 -332 2185 183 81 121 chr11 94236240 94236998 -56546555 + LTR8A LTR ERV1 1 727 0 1322 303 97 54 chr11 94236998 94237069 -56546484 + L2 LINE L2 2940 3007 -265 255 323 108 77 chr11 94237183 94237313 -56546240 + L2 LINE L2 3138 3271 -1 1128 179 51 17 chr11 94237630 94237865 -56545688 + MER34C LTR ERV1 37 279 -306 520 195 101 27 chr11 94238225 94238374 -56545179 - MIR3 SINE MIR -33 175 16 1964 114 49 80 chr11 94238749 94239136 -56544417 + THE1C LTR MaLR 1 375 0 596 297 42 46 chr11 94239396 94239655 -56543898 + MIR SINE MIR 3 260 -2 441 225 25 27 chr11 94240218 94240377 -56543176 + MIR SINE MIR 34 192 -55 2166 112 0 11 chr11 94241223 94241508 -56542045 - AluSx SINE Alu -30 282 1 957 261 81 27 chr11 94241911 94242282 -56541271 + MLT1I LTR MaLR 2 392 -17 244 227 196 10 chr11 94242557 94242654 -56540899 + L2 LINE L2 3180 3294 -19 285 383 7 0 chr11 94242712 94242861 -56540692 + MIR SINE MIR 113 262 0 680 285 45 87 chr11 94242981 94243497 -56540056 + MER34 LTR ERV1 20 513 -29 1551 184 85 24 chr11 94243555 94243930 -56539623 + MLT1C LTR MaLR 68 465 -2 213 278 0 0 chr11 94245163 94245217 -56538336 - L2 LINE L2 -32 3240 3187 339 262 103 24 chr11 94245654 94245780 -56537773 + MIR3 SINE MIR 67 202 -6 398 274 16 70 chr11 94245806 94245925 -56537628 + MIR SINE MIR 29 136 -126 2351 54 0 20 chr11 94245925 94246213 -56537340 + AluY SINE Alu 1 306 0 254 0 54 0 chr11 94246213 94246272 -56537281 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 398 274 16 70 chr11 94246277 94246343 -56537210 + MIR SINE MIR 136 204 -58 401 203 27 0 chr11 94246711 94246785 -56536768 - MER2 DNA MER2_type 0 345 270 2158 128 0 0 chr11 94246785 94247094 -56536459 + AluSx SINE Alu 1 309 0 3265 77 11 22 chr11 94247175 94247628 -56535925 - L1PA8 LINE L1 0 6172 5725 1041 104 13 0 chr11 94247629 94247783 -56535770 - MER2 DNA MER2_type -148 197 42 378 275 138 5 chr11 94249909 94250098 -56533455 + MIR SINE MIR 18 231 -31 944 165 18 30 chr11 94250156 94250387 -56533166 + L1M2 LINE L1 2723 2957 -3891 2192 114 7 3 chr11 94250398 94250697 -56532856 + AluSq SINE Alu 1 300 -13 43747 49 5 0 chr11 94250700 94256823 -56526730 + L1PA3 LINE L1 1 6155 0 1465 138 134 46 chr11 94256832 94257137 -56526416 - MER4B LTR ERV1 -278 332 1 398 222 37 9 chr11 94257339 94257447 -56526106 - MIR SINE MIR -56 206 96 1982 198 12 5 chr11 94257575 94257975 -56525578 - L1MB5 LINE L1 -26 6148 5746 304 288 124 46 chr11 94258402 94258555 -56524998 - MIR SINE MIR -66 196 32 11927 36 29 0 chr11 94258816 94260986 -56522567 + L1PA4 LINE L1 3949 6153 -2 6774 179 35 20 chr11 94260995 94261783 -56521770 + L1M2 LINE L1 2956 3776 -3072 1935 128 29 0 chr11 94261783 94262064 -56521489 + AluSx SINE Alu 6 294 -18 6774 179 35 20 chr11 94262064 94262749 -56520804 + L1M2 LINE L1 3776 4450 -2398 2870 135 19 116 chr11 94262763 94263082 -56520471 - Tigger3(Golem) DNA MER2_type -27 3002 2654 267 31 0 0 chr11 94263082 94263114 -56520439 + (TA)n Simple_repeat Simple_repeat 1 32 0 2870 135 19 116 chr11 94263114 94263393 -56520160 - Tigger3(Golem) DNA MER2_type -375 2654 2472 2023 137 0 0 chr11 94263393 94263700 -56519853 + AluSx SINE Alu 1 307 0 2870 135 19 116 chr11 94263700 94263771 -56519782 - Tigger3(Golem) DNA MER2_type -557 2472 2396 180 145 16 129 chr11 94263904 94263966 -56519587 + MER5A DNA MER1_type 52 106 -83 264 365 10 0 chr11 94264921 94265025 -56518528 - L2 LINE L2 -35 3237 3133 7961 17 0 0 chr11 94265179 94266296 -56517257 + L1PA2 LINE L1 5035 6151 -4 36 40 0 0 chr11 94266312 94266362 -56517191 + AT_rich Low_complexity Low_complexity 1 50 0 209 264 19 94 chr11 94266435 94266541 -56517012 + MIR SINE MIR 30 127 -81 214 240 196 23 chr11 94267264 94267397 -56516156 + MIR SINE MIR 50 198 -64 593 255 132 56 chr11 94267905 94268156 -56515397 - MLT1L LTR MaLR -338 277 8 753 119 0 0 chr11 94268806 94268915 -56514638 + MER30 DNA MER1_type 5 113 -117 2117 114 29 44 chr11 94268977 94269320 -56514233 + LTR32 LTR ERVL 11 348 -123 677 217 19 32 chr11 94269323 94269480 -56514073 + LTR32 LTR ERVL 317 471 0 25814 100 7 50 chr11 94269847 94275957 -56507596 + L1PA7 LINE L1 12 5759 -395 2462 77 0 10 chr11 94275957 94276267 -56507286 + AluY SINE Alu 1 307 -4 25814 100 7 50 chr11 94276267 94276647 -56506906 + L1PA7 LINE L1 5759 6154 0 530 241 148 0 chr11 94277688 94277850 -56505703 - MIR3 SINE MIR -7 201 16 612 150 245 7 chr11 94277946 94278093 -56505460 + MER5A DNA MER1_type 1 182 -7 391 237 11 11 chr11 94279034 94279127 -56504426 - MER5B DNA MER1_type 0 178 86 420 302 73 17 chr11 94279290 94279469 -56504084 - MIR3 SINE MIR -10 198 10 450 238 203 15 chr11 94281108 94281310 -56502243 - MIR SINE MIR -11 251 12 1418 198 70 63 chr11 94281327 94281786 -56501767 + MER31B LTR ERV1 1 462 -4 594 258 72 16 chr11 94282889 94283083 -56500470 + MIR SINE MIR 2 206 -56 440 268 118 7 chr11 94283560 94283713 -56499840 - MIR SINE MIR -7 255 86 274 354 31 48 chr11 94283958 94284187 -56499366 - L2 LINE L2 -179 3093 2869 573 290 109 0 chr11 94285906 94286099 -56497454 - MIR SINE MIR -38 224 11 361 228 11 22 chr11 94286548 94286640 -56496913 + MIR SINE MIR 47 137 -125 599 234 46 69 chr11 94286771 94286946 -56496607 - MER63A DNA MER1_type -39 171 1 235 259 0 0 chr11 94287731 94287789 -56495764 - L2 LINE L2 -4 3268 3211 * 618 249 124 0 chr11 94287757 94287958 -56495595 - MIR SINE MIR -24 238 13 297 279 58 10 chr11 94287982 94288086 -56495467 + MIR SINE MIR 4 112 -150 259 301 0 29 chr11 94288939 94289042 -56494511 + MIR SINE MIR 47 146 -116 2645 155 15 90 chr11 94289091 94289109 -56494444 - L1MC3 LINE L1 -16 7769 7751 2070 135 37 45 chr11 94289109 94289487 -56494066 + THE1C LTR MaLR 1 375 0 2645 155 15 90 chr11 94289487 94289706 -56493847 - L1MC3 LINE L1 -34 7751 7517 384 22 0 0 chr11 94289706 94289751 -56493802 + (TG)n Simple_repeat Simple_repeat 2 46 0 2645 155 15 90 chr11 94289751 94290126 -56493427 - L1MC3 LINE L1 -268 7517 7202 * 8091 174 32 25 chr11 94290115 94291661 -56491892 - L1MC3 LINE L1 -845 6940 5385 5229 122 15 6 chr11 94291676 94292473 -56491080 - L1PA16 LINE L1 -9 6157 5354 3411 208 7 3 chr11 94292479 94293196 -56490357 - L1PA16 LINE L1 -1022 5124 4405 496 159 44 0 chr11 94293190 94293303 -56490250 - L1MC3 LINE L1 -956 5388 5271 * 3432 191 38 17 chr11 94293273 94294186 -56489367 + L1MB4 LINE L1 4538 5491 -689 207 100 0 0 chr11 94294186 94294216 -56489337 + (CA)n Simple_repeat Simple_repeat 2 31 0 3432 191 38 17 chr11 94294216 94294637 -56488916 + L1MB4 LINE L1 5491 5902 -278 287 53 0 0 chr11 94294636 94294674 -56488879 + L1MB8 LINE L1 6120 6157 -21 * 526 256 8 0 chr11 94294693 94294822 -56488731 - L1MC3 LINE L1 -869 5277 5148 270 310 50 0 chr11 94295602 94295702 -56487851 - MIR SINE MIR -79 183 79 2285 116 3 0 chr11 94295937 94296247 -56487306 + AluSp SINE Alu 1 311 -2 339 25 0 0 chr11 94296247 94296287 -56487266 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 513 236 85 65 chr11 94296938 94297137 -56486416 + Charlie7 DNA MER1_type 201 403 -2209 394 264 95 27 chr11 94297807 94297955 -56485598 - L2 LINE L2 -2 3270 3113 282 261 57 0 chr11 94298005 94298093 -56485460 + MIR SINE MIR 156 248 -14 602 286 28 28 chr11 94298635 94298852 -56484701 - MIR SINE MIR 0 262 46 213 262 82 0 chr11 94299886 94299974 -56483579 + MIR SINE MIR 30 130 -78 279 363 52 0 chr11 94300127 94300262 -56483291 + L2 LINE L2 3172 3313 0 268 333 29 0 chr11 94300264 94300366 -56483187 - L2 LINE L2 0 3313 3209 1047 112 73 28 chr11 94300448 94300627 -56482926 + MER3 DNA MER1_type 23 209 0 6591 89 2 0 chr11 94301277 94302433 -56481120 - L1PA8 LINE L1 0 6487 5317 4459 97 3 11 chr11 94302438 94303076 -56480477 - L1PA8 LINE L1 -1800 4661 4029 3452 130 28 23 chr11 94303058 94303421 -56480132 - L1PA8 LINE L1 -4839 1622 1253 * 192 40 0 0 chr11 94303421 94303446 -56480107 + (TTG)n Simple_repeat Simple_repeat 3 27 0 3452 130 28 23 chr11 94303446 94303652 -56479901 - L1PA8 LINE L1 -5208 1253 1050 209 270 72 81 chr11 94304743 94304854 -56478699 + L2 LINE L2 3162 3271 -1 390 292 67 15 chr11 94304918 94305113 -56478440 + MIR SINE MIR 3 207 -55 206 219 73 37 chr11 94306840 94306922 -56476631 - MIR SINE MIR -110 152 68 23 0 0 0 chr11 94307200 94307223 -56476330 + AT_rich Low_complexity Low_complexity 1 23 0 339 289 25 41 chr11 94307881 94308002 -56475551 - MIR SINE MIR -91 171 53 309 327 118 0 chr11 94308055 94308165 -56475388 - L2 LINE L2 -2 3270 3148 263 321 24 33 chr11 94308343 94308486 -56475067 + MIR SINE MIR 15 155 -76 275 254 0 0 chr11 94309672 94309727 -56473826 - MIR SINE MIR -161 101 47 317 234 180 0 chr11 94310101 94310229 -56473324 - MER112 DNA MER1_type -43 217 67 378 276 87 0 chr11 94310335 94310462 -56473091 + MIR SINE MIR 3 140 -122 351 274 181 22 chr11 94310624 94310894 -56472659 + L2 LINE L2 2269 2581 -733 216 313 25 12 chr11 94311330 94311410 -56472143 - MER5A DNA MER1_type -11 178 98 210 91 0 0 chr11 94312161 94312194 -56471359 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 529 68 81 0 chr11 94312299 94312373 -56471180 - MADE1 DNA Mariner 0 80 1 5347 157 36 3 chr11 94312744 94313967 -56469586 + L1MB1 LINE L1 4901 6168 0 1310 303 97 40 chr11 94314124 94315128 -56468425 - L2 LINE L2 -494 2820 1760 220 335 72 34 chr11 94316089 94316298 -56467255 - L2 LINE L2 -222 3050 2834 428 275 50 0 chr11 94316913 94317033 -56466520 + MIR SINE MIR 47 172 -90 509 202 54 23 chr11 94317063 94317192 -56466361 - L2 LINE L2 -4 3268 3136 261 263 175 18 chr11 94318224 94318338 -56465215 + L2 LINE L2 3123 3254 -18 207 161 0 0 chr11 94318349 94318380 -56465173 + polypurine Low_complexity Low_complexity 1 31 0 293 0 27 0 chr11 94318385 94318422 -56465131 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 255 272 107 19 chr11 94319246 94319349 -56464204 - L2 LINE L2 -19 3253 3142 2133 175 8 30 chr11 94320281 94320582 -56462971 + MLT1B LTR MaLR 1 292 -98 2270 115 60 17 chr11 94320582 94320931 -56462622 - THE1B LTR MaLR 0 364 1 2133 175 8 30 chr11 94320931 94321028 -56462525 + MLT1B LTR MaLR 292 390 0 393 292 0 44 chr11 94321861 94321998 -56461555 + MIR SINE MIR 9 139 -123 577 208 92 29 chr11 94322607 94322814 -56460739 - L1ME4a LINE L1 -64 6057 5838 428 200 15 104 chr11 94322997 94323132 -56460421 - L2 LINE L2 0 3313 3191 321 315 68 7 chr11 94323133 94323279 -56460274 - L1ME4a LINE L1 -506 5615 5461 1587 167 56 33 chr11 94323411 94323716 -56459837 + AluJb SINE Alu 1 312 0 185 119 24 0 chr11 94324162 94324204 -56459349 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 243 88 0 0 chr11 94324276 94324310 -56459243 + (TA)n Simple_repeat Simple_repeat 1 34 0 234 0 0 0 chr11 94324309 94324335 -56459218 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 647 233 207 0 chr11 94324335 94324528 -56459025 - MIR SINE MIR -25 237 5 216 205 0 0 chr11 94324592 94324631 -56458922 - L2 LINE L2 -19 3253 3215 211 209 57 95 chr11 94324624 94324729 -56458824 - MIR3 SINE MIR -104 104 4 * 618 296 0 7 chr11 94325624 94325776 -56457777 - MIR3 SINE MIR -6 202 52 238 236 13 41 chr11 94326356 94326445 -56457108 + MLT1J LTR MaLR 58 180 -308 1402 120 17 20 chr11 94326660 94326948 -56456605 - MER4E LTR ERV1 0 766 500 44804 42 2 2 chr11 94326962 94333111 -56450442 + L1PA3 LINE L1 3 6155 0 1463 138 134 46 chr11 94333120 94333425 -56450128 - MER4B LTR ERV1 -278 332 1 427 214 44 64 chr11 94333627 94333792 -56449761 - MIR SINE MIR -56 206 45 2188 188 10 2 chr11 94333863 94334263 -56449290 - L1MB5 LINE L1 -26 6148 5746 360 276 132 46 chr11 94334690 94334842 -56448711 - MIR SINE MIR -66 196 32 215 237 102 0 chr11 94335227 94335286 -56448267 - MIR SINE MIR -121 141 77 186 133 0 0 chr11 94336047 94336077 -56447476 + (TTG)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr11 94336455 94336476 -56447077 + (T)n Simple_repeat Simple_repeat 1 21 0 387 295 215 49 chr11 94336567 94336715 -56446838 - L3 LINE CR1 -10 1567 1445 197 65 32 0 chr11 94336715 94336746 -56446807 + (TA)n Simple_repeat Simple_repeat 2 33 0 387 295 215 49 chr11 94336746 94336885 -56446668 - L3 LINE CR1 -132 1445 1232 702 289 24 5 chr11 94337951 94338162 -56445391 - MIR SINE MIR -1 261 47 205 316 0 0 chr11 94338445 94338502 -56445051 + L2 LINE L2 3253 3309 -4 431 275 147 14 chr11 94338656 94338874 -56444679 + L1ME3A LINE L1 5624 5870 -300 21 0 0 0 chr11 94338878 94338899 -56444654 + AT_rich Low_complexity Low_complexity 1 21 0 501 291 28 0 chr11 94338902 94339043 -56444510 - MIR SINE MIR 0 262 118 2929 100 28 107 chr11 94340040 94340610 -56442943 + L1MA9 LINE L1 5783 6307 -5 516 207 33 8 chr11 94340742 94340863 -56442690 + MIR SINE MIR 77 200 -62 7144 63 11 0 chr11 94340938 94342278 -56441275 - L1PA8A LINE L1 -2 6129 4785 6086 99 2 2 chr11 94342278 94343127 -56440426 + L1PA8A LINE L1 3946 4794 -1352 246 287 9 83 chr11 94343178 94343286 -56440267 - MIR SINE MIR -132 130 31 208 289 0 0 chr11 94344241 94344293 -56439260 - L3 LINE CR1 -2 1575 1524 538 216 14 29 chr11 94344342 94344481 -56439072 - MIR SINE MIR -52 210 74 474 301 155 13 chr11 94344966 94345341 -56438212 - L1ME4a LINE L1 -71 6050 5623 2427 178 13 15 chr11 94345600 94346055 -56437498 + L1MD3 LINE L1 7537 7990 -5 234 0 0 0 chr11 94346055 94346081 -56437472 + (T)n Simple_repeat Simple_repeat 1 26 0 2145 112 0 11 chr11 94346417 94346702 -56436851 - AluSx SINE Alu -30 282 1 957 261 81 27 chr11 94347105 94347476 -56436077 + MLT1I LTR MaLR 2 392 -17 276 245 194 10 chr11 94347751 94347849 -56435704 + L2 LINE L2 3139 3254 -18 319 383 7 0 chr11 94347906 94348055 -56435498 + MIR SINE MIR 113 262 0 692 285 45 87 chr11 94348175 94348691 -56434862 + MER34 LTR ERV1 20 513 -29 1551 184 85 24 chr11 94348749 94349124 -56434429 + MLT1C LTR MaLR 68 465 -2 232 278 0 0 chr11 94350357 94350411 -56433142 - L2 LINE L2 -32 3240 3187 191 317 57 24 chr11 94350581 94350704 -56432849 + L2 LINE L2 3059 3185 -87 377 262 103 24 chr11 94350848 94350974 -56432579 + MIR3 SINE MIR 67 202 -6 321 313 27 9 chr11 94351000 94351112 -56432441 + MIR SINE MIR 29 142 -120 887 36 0 36 chr11 94351119 94351229 -56432324 + AluY SINE Alu 1 106 -205 36 0 0 0 chr11 94351519 94351555 -56431998 + AT_rich Low_complexity Low_complexity 1 36 0 403 203 27 0 chr11 94352007 94352081 -56431472 - MER2 DNA MER2_type 0 345 270 2188 136 0 3 chr11 94352081 94352391 -56431162 + AluSx SINE Alu 1 309 -3 6784 89 5 0 chr11 94352469 94353639 -56429914 - L1PA8 LINE L1 0 6487 5317 4429 97 5 12 chr11 94353644 94354282 -56429271 - L1PA8 LINE L1 -1800 4661 4029 2192 128 3 0 chr11 94354264 94354601 -56428952 - L1PA8 LINE L1 -4839 1622 1285 * 28576 43 1 3 chr11 94354718 94358972 -56424581 + L1PA6 LINE L1 1907 6154 0 584 241 148 0 chr11 94360015 94360177 -56423376 - MIR3 SINE MIR -7 201 16 670 136 245 7 chr11 94360273 94360420 -56423133 + MER5A DNA MER1_type 1 182 -7 245 234 0 0 chr11 94360644 94360708 -56422845 + G-rich Low_complexity Low_complexity 1 64 0 24 0 0 0 chr11 94360708 94360732 -56422821 + GC_rich Low_complexity Low_complexity 1 24 0 261 0 0 0 chr11 94360752 94360781 -56422772 + (A)n Simple_repeat Simple_repeat 1 29 0 285 308 20 55 chr11 94360815 94360961 -56422592 + MIR SINE MIR 117 257 -5 2396 144 58 36 chr11 94361009 94361171 -56422382 + MSTA LTR MaLR 1 158 -270 2165 97 24 3 chr11 94361171 94361461 -56422092 - AluSg SINE Alu -14 296 1 2396 144 58 36 chr11 94361461 94361715 -56421838 + MSTA LTR MaLR 158 426 -2 2295 135 33 28 chr11 94361878 94362240 -56421313 + THE1B LTR MaLR 1 364 0 278 284 12 25 chr11 94362551 94362632 -56420921 + L2 LINE L2 3188 3267 -5 194 105 53 35 chr11 94363997 94364054 -56419499 + CT-rich Low_complexity Low_complexity 1 58 0 329 283 33 17 chr11 94364424 94364544 -56419009 + MER117 DNA MER1_type 29 150 -47 187 359 47 9 chr11 94364617 94364723 -56418830 - MIR3 SINE MIR -48 160 51 215 271 181 42 chr11 94364884 94365028 -56418525 - MER5A DNA MER1_type -25 164 1 578 271 15 0 chr11 94365330 94365463 -56418090 + MIR SINE MIR 17 151 -111 2924 174 24 18 chr11 94365469 94365974 -56417579 + MLT2B2 LTR ERVL 1 508 -7 187 204 31 82 chr11 94365976 94366074 -56417479 + MIR SINE MIR 170 262 0 247 263 18 0 chr11 94367264 94367321 -56416232 - L2 LINE L2 -494 2820 2763 333 176 186 39 chr11 94367936 94368038 -56415515 + MIR SINE MIR 21 137 -125 * 388 248 67 0 chr11 94368037 94368142 -56415411 - L2 LINE L2 0 3313 3202 862 219 72 25 chr11 94368212 94368449 -56415104 + MIR SINE MIR 5 252 -10 1228 233 124 26 chr11 94368558 94369070 -56414483 + LTR50 LTR ERVL 1 675 -120 895 218 133 0 chr11 94369070 94369258 -56414295 - MER58C DNA MER1_type 0 215 3 1228 233 124 26 chr11 94369258 94369393 -56414160 + LTR50 LTR ERVL 675 795 0 248 284 59 39 chr11 94370450 94370552 -56413001 - L2 LINE L2 -35 3237 3134 879 250 11 0 chr11 94370856 94371032 -56412521 + MER5B DNA MER1_type 1 178 0 267 289 193 7 chr11 94373941 94374076 -56409477 - MER5A DNA MER1_type -1 188 29 392 254 223 36 chr11 94374130 94374198 -56409355 - MIR SINE MIR 0 262 208 2133 129 0 0 chr11 94374198 94374485 -56409068 - AluSq SINE Alu -26 287 1 392 254 223 36 chr11 94374485 94374609 -56408944 - MIR SINE MIR -54 208 34 271 238 200 50 chr11 94374932 94375092 -56408461 + MIR3 SINE MIR 21 204 -4 874 266 49 8 chr11 94375696 94375940 -56407613 - MIR SINE MIR -7 255 2 206 294 137 10 chr11 94376292 94376394 -56407159 - MIR SINE MIR -77 131 17 262 255 0 0 chr11 94376560 94376611 -56406942 + polypurine Low_complexity Low_complexity 2 52 0 1242 151 73 0 chr11 94377475 94377667 -56405886 + AluJb SINE Alu 1 206 -106 751 219 128 24 chr11 94377684 94377911 -56405642 + MLT1B LTR MaLR 175 374 -16 1281 196 162 17 chr11 94377911 94378257 -56405296 + MSTD LTR MaLR 1 396 0 253 261 208 15 chr11 94378264 94378394 -56405159 - MIR SINE MIR -63 145 37 212 287 83 37 chr11 94378741 94378849 -56404704 + MIR SINE MIR 131 243 -19 504 286 54 21 chr11 94379083 94379288 -56404265 + MIR SINE MIR 3 211 -39 197 292 0 46 chr11 94379315 94379380 -56404173 - MIR SINE MIR -155 107 46 230 331 66 20 chr11 94379642 94379793 -56403760 - L2 LINE L2 0 3272 3115 357 24 0 0 chr11 94380417 94380459 -56403094 + (CA)n Simple_repeat Simple_repeat 1 42 0 771 257 20 36 chr11 94381079 94381332 -56402221 - MIR SINE MIR -6 256 8 988 174 11 16 chr11 94384994 94385178 -56398375 + AluJb SINE Alu 122 304 -8 276 189 38 0 chr11 94386216 94386269 -56397284 + L2 LINE L2 3214 3268 -4 367 265 68 0 chr11 94386310 94386427 -56397126 + MIR SINE MIR 68 192 -70 712 323 50 23 chr11 94386610 94387140 -56396413 + L2 LINE L2 2506 3049 -264 29567 125 21 80 chr11 94387218 94389723 -56393830 + L1PA7 LINE L1 9 2007 -4139 1718 73 0 34 chr11 94389723 94389957 -56393596 + AluY SINE Alu 76 301 -10 29567 125 21 80 chr11 94389957 94393064 -56390489 + L1PA7 LINE L1 2007 5294 -852 44045 49 1 0 chr11 94393065 94399212 -56384341 + L1PA4 LINE L1 5 6153 -2 6723 73 1 8 chr11 94399212 94400085 -56383468 + L1PA7 LINE L1 5281 6154 0 415 351 15 0 chr11 94400230 94400364 -56383189 + L2 LINE L2 3137 3272 0 2027 128 14 0 chr11 94400586 94400876 -56382677 - AluSx SINE Alu -18 294 1 185 261 62 0 chr11 94400900 94400965 -56382588 + MIR SINE MIR 194 262 0 254 270 14 0 chr11 94402269 94402343 -56381210 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 398 263 146 28 chr11 94402873 94403029 -56380524 - MIR SINE MIR -54 208 40 311 342 114 0 chr11 94403847 94403996 -56379557 + Tigger8 DNA MER2_type 446 611 -55 464 0 0 18 chr11 94404285 94404342 -56379211 + (TATTG)n Simple_repeat Simple_repeat 1 56 0 205 233 0 0 chr11 94404466 94404509 -56379044 + MIR3 SINE MIR 160 202 -6 682 229 50 118 chr11 94404655 94404800 -56378753 + MIR SINE MIR 3 122 -140 1615 156 4 33 chr11 94404800 94405076 -56378477 + AluJo SINE Alu 40 307 -5 682 229 50 118 chr11 94405076 94405209 -56378344 + MIR SINE MIR 122 262 0 1000 264 159 20 chr11 94407597 94408335 -56375218 - L2 LINE L2 -54 3259 2427 215 380 8 8 chr11 94408338 94408467 -56375086 - L2 LINE L2 -645 2669 2541 841 247 111 21 chr11 94408542 94408940 -56374613 + MLT1J LTR MaLR 32 495 -16 306 261 67 22 chr11 94410798 94410932 -56372621 + MER112 DNA MER1_type 110 249 -11 2114 123 49 27 chr11 94411810 94412177 -56371376 - THE1C LTR MaLR 0 375 1 416 310 92 88 chr11 94412388 94412955 -56370598 + MLT1K LTR MaLR 2 570 -18 423 224 126 7 chr11 94413547 94413690 -56369863 + MIR3 SINE MIR 43 202 -6 277 179 103 97 chr11 94413730 94413875 -56369678 - MIR SINE MIR 0 262 117 673 210 140 21 chr11 94415140 94415326 -56368227 - MER3 DNA MER1_type -1 208 1 667 291 78 22 chr11 94415497 94416003 -56367550 + L2 LINE L2 2767 3308 -5 193 271 0 0 chr11 94416330 94416378 -56367175 - MER5A DNA MER1_type -50 139 92 298 258 16 57 chr11 94416383 94416507 -56367046 + MLT1K LTR MaLR 466 584 -4 233 225 155 78 chr11 94416968 94417110 -56366443 - MLT1J LTR MaLR -128 383 231 861 137 0 23 chr11 94417118 94417249 -56366304 - FLAM_C SINE Alu -15 128 1 668 256 0 55 chr11 94417278 94417477 -56366076 - MLT1J LTR MaLR -315 196 9 191 324 148 0 chr11 94418495 94418603 -56364950 + L2 LINE L2 2926 3049 -223 227 292 62 0 chr11 94418763 94418859 -56364694 + MIR SINE MIR 75 176 -86 21 0 0 0 chr11 94418868 94418889 -56364664 + AT_rich Low_complexity Low_complexity 1 21 0 281 196 18 0 chr11 94418912 94418968 -56364585 - MIR SINE MIR -29 233 177 643 228 172 4 chr11 94418969 94419202 -56364351 + LTR50 LTR ERVL 7 278 -517 387 235 84 45 chr11 94419317 94419496 -56364057 + LTR33A LTR ERVL 327 512 -11 281 234 266 0 chr11 94419505 94419599 -56363954 - MIR SINE MIR -98 164 46 1608 137 133 0 chr11 94421947 94422210 -56361343 + AluJb SINE Alu 1 298 -14 769 269 137 18 chr11 94422226 94422453 -56361100 + MIR SINE MIR 9 262 0 351 0 0 0 chr11 94422669 94422708 -56360845 + (CA)n Simple_repeat Simple_repeat 2 40 0 910 232 174 56 chr11 94425231 94425679 -56357874 - MLT1D LTR MaLR 0 505 5 740 297 78 49 chr11 94426292 94426743 -56356810 - L3 LINE CR1 -495 1082 619 309 232 0 74 chr11 94427779 94427874 -56355679 + L1MC4 LINE L1 6615 6702 -1340 264 185 0 0 chr11 94427878 94427932 -56355621 + (TA)n Simple_repeat Simple_repeat 1 54 0 315 270 22 11 chr11 94428276 94428365 -56355188 + L1MC4 LINE L1 6614 6703 -1339 * 324 271 47 0 chr11 94428323 94428408 -56355145 - L1MC4 LINE L1 -1339 6703 6615 345 300 0 0 chr11 94428421 94428511 -56355042 + L1MC4 LINE L1 6614 6703 -1339 333 303 0 0 chr11 94428435 94428524 -56355029 - L1MC4 LINE L1 -1339 6703 6615 * 183 129 0 0 chr11 94428529 94428560 -56354993 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 309 262 48 0 chr11 94428562 94428646 -56354907 - L1MC4 LINE L1 -1340 6702 6615 321 244 0 0 chr11 94428649 94428735 -56354818 + (TA)n Simple_repeat Simple_repeat 2 87 0 237 65 0 0 chr11 94428820 94428851 -56354702 + (TG)n Simple_repeat Simple_repeat 2 32 0 398 264 65 69 chr11 94429011 94429227 -56354326 + L2 LINE L2 3081 3295 -18 1229 84 0 12 chr11 94430019 94430186 -56353367 - AluY SINE Alu -1 310 146 210 222 167 71 chr11 94431583 94431709 -56351844 - MER5A DNA MER1_type 0 189 52 1647 167 36 104 chr11 94431842 94431913 -56351640 + Tigger3(Golem) DNA MER2_type 2396 2470 -559 2001 137 0 0 chr11 94431913 94432220 -56351333 - AluSx SINE Alu 0 307 1 1647 167 36 104 chr11 94432220 94432722 -56350831 + Tigger3(Golem) DNA MER2_type 2470 2931 -98 750 171 8 0 chr11 94432862 94432979 -56350574 - AluSq/x SINE Alu -195 118 1 249 33 0 0 chr11 94433093 94433123 -56350430 + (TG)n Simple_repeat Simple_repeat 2 31 0 299 262 111 24 chr11 94434536 94434662 -56348891 - MIR SINE MIR 0 262 126 1437 170 45 53 chr11 94435220 94435579 -56347974 - MLT1A1 LTR MaLR 0 365 10 22 0 0 0 chr11 94435836 94435858 -56347695 + AT_rich Low_complexity Low_complexity 1 22 0 238 314 94 0 chr11 94436453 94436612 -56346941 - L1MC4 LINE L1 -1897 5911 5738 244 361 49 24 chr11 94436685 94436973 -56346580 - L1MC4 LINE L1 -521 5641 5347 1244 198 29 36 chr11 94437180 94437488 -56346065 + L1ME LINE L1 5443 5748 -416 261 0 0 0 chr11 94437878 94437907 -56345646 + (T)n Simple_repeat Simple_repeat 1 29 0 1222 84 0 12 chr11 94438105 94438271 -56345282 - AluY SINE Alu -2 309 146 211 300 123 24 chr11 94438832 94439002 -56344551 - L2 LINE L2 -404 2910 2724 2560 182 45 13 chr11 94439531 94440086 -56343467 - L1MD3 LINE L1 -19 7976 7404 321 212 24 12 chr11 94440086 94440171 -56343382 - MLT1F1 LTR MaLR -442 125 40 2267 90 3 0 chr11 94440205 94440494 -56343059 + AluSq SINE Alu 14 303 -10 461 269 62 0 chr11 94441441 94441586 -56341967 - MIR SINE MIR -14 248 95 1019 207 152 52 chr11 94442512 94442893 -56340660 + MLT1J1 LTR MaLR 21 439 -7 2090 113 3 0 chr11 94443702 94444025 -56339528 + AluSx SINE Alu 1 324 0 187 286 0 0 chr11 94444377 94444419 -56339134 + L2 LINE L2 3138 3179 -93 2401 189 87 16 chr11 94444461 94445412 -56338141 + L1MD2 LINE L1 4867 5865 -494 218 212 0 153 chr11 94446057 94446142 -56337411 - MIR3 SINE MIR -25 183 112 336 250 40 13 chr11 94446264 94446340 -56337213 - MIR SINE MIR -113 95 18 22 35 0 0 chr11 94446999 94447028 -56336525 + AT_rich Low_complexity Low_complexity 1 29 0 324 0 0 0 chr11 94447045 94447081 -56336472 + (TG)n Simple_repeat Simple_repeat 2 37 0 209 282 26 26 chr11 94449007 94449085 -56334468 + MIR SINE MIR 172 249 -13 2090 186 39 7 chr11 94449120 94449555 -56333998 - MER66A LTR ERV1 -3 475 27 288 0 0 0 chr11 94450050 94450082 -56333471 + (T)n Simple_repeat Simple_repeat 1 32 0 607 259 80 27 chr11 94450085 94450309 -56333244 + MIR SINE MIR 16 251 -11 1900 155 30 3 chr11 94451029 94451333 -56332220 + AluSx SINE Alu 1 312 0 1677 100 9 4 chr11 94501344 94501574 -56281979 - AluSx SINE Alu -81 231 1 1982 239 27 21 chr11 94501574 94502027 -56281526 - L1MB3 LINE L1 -352 5831 5382 2344 85 0 0 chr11 94502027 94502320 -56281233 - AluY SINE Alu -18 293 1 1982 239 27 21 chr11 94502320 94502867 -56280686 - L1MB3 LINE L1 -801 5382 4818 2212 100 7 10 chr11 94502905 94503205 -56280348 + AluSp SINE Alu 1 299 -14 430 183 12 0 chr11 94503217 94503299 -56280254 - LTR50 LTR ERVL -712 83 1 1559 194 5 69 chr11 94503313 94503536 -56280017 - L1MA4 LINE L1 -153 6147 5960 1847 154 0 18 chr11 94503536 94503821 -56279732 - AluSx SINE Alu -32 280 1 1559 194 5 69 chr11 94503821 94504004 -56279549 - L1MA4 LINE L1 -340 5960 5767 30 0 0 0 chr11 94504010 94504040 -56279513 + AT_rich Low_complexity Low_complexity 1 30 0 495 234 65 7 chr11 94504042 94504196 -56279357 + HsTC2 DNA Tc2 1633 1795 -103 392 209 96 9 chr11 94504356 94504471 -56279082 + MER5B DNA MER1_type 50 174 -4 700 250 17 0 chr11 94504579 94504755 -56278798 - MER6B DNA MER2_type 0 210 32 2607 149 93 25 chr11 94505941 94507727 -56275826 + SATR1 Satellite Satellite 1 1908 0 2442 165 105 13 chr11 94507746 94509684 -56273869 + SATR1 Satellite Satellite 1 2115 0 2069 188 259 12 chr11 94509708 94510937 -56272616 + SATR1 Satellite Satellite 1 1532 -1 960 205 274 0 chr11 94510960 94511337 -56272216 + SATR1 Satellite Satellite 1 480 -398 333 221 94 67 chr11 94512017 94512166 -56271387 - MIR SINE MIR -1 261 109 1585 214 24 165 chr11 94512624 94513212 -56270341 - MLT1D LTR MaLR 0 505 1 338 281 128 56 chr11 94513284 94513480 -56270073 + MIR SINE MIR 9 218 -44 273 288 0 27 chr11 94514627 94514700 -56268853 - L2 LINE L2 -16 3256 3186 2371 154 54 9 chr11 94514705 94515126 -56268427 + MSTB1 LTR MaLR 1 432 0 1987 146 17 0 chr11 94515688 94515982 -56267571 + AluJo SINE Alu 1 299 -13 204 296 56 14 chr11 94516819 94516890 -56266663 + MIR SINE MIR 9 82 -180 1701 162 0 4 chr11 94516905 94517170 -56266383 - AluJb SINE Alu -15 297 34 441 336 0 0 chr11 94517454 94517588 -56265965 - L2 LINE L2 -3 3269 3136 182 254 36 0 chr11 94517676 94517731 -56265822 - MIR SINE MIR -129 133 77 222 307 202 26 chr11 94517904 94518018 -56265535 + L2 LINE L2 3139 3272 0 238 329 24 0 chr11 94518026 94518108 -56265445 - MIR SINE MIR -90 118 35 1476 299 52 42 chr11 94518714 94519670 -56263883 - L1MEc LINE L1 -5143 1253 288 225 329 22 22 chr11 94519714 94519851 -56263702 - L1MEc LINE L1 -6209 187 51 304 302 19 28 chr11 94519866 94519972 -56263581 - L2 LINE L2 -277 3036 2932 426 289 75 35 chr11 94520083 94520284 -56263269 + MIR SINE MIR 6 214 -48 473 255 70 41 chr11 94520854 94521075 -56262478 + MIR SINE MIR 16 245 -17 232 281 0 10 chr11 94521267 94521363 -56262190 - L1MC4 LINE L1 -1334 6708 6614 1819 147 49 14 chr11 94521392 94521678 -56261875 - AluSx SINE Alu -16 296 1 309 276 53 98 chr11 94521697 94521943 -56261610 + MLT1K LTR MaLR 188 422 -166 889 280 28 67 chr11 94522031 94522388 -56261165 - LTR16B LTR ERVL 0 464 122 491 136 100 55 chr11 94522392 94522502 -56261051 + MER53 DNA DNA 1 115 -74 288 57 0 0 chr11 94522492 94522527 -56261026 - MER53 DNA DNA -150 39 5 * 272 302 31 0 chr11 94522561 94522657 -56260896 - LTR16B LTR ERVL -365 99 1 236 293 27 0 chr11 94522666 94522741 -56260812 + MLT1K LTR MaLR 509 585 -3 2521 242 30 3 chr11 94522741 94523316 -56260237 - MLT1G LTR MaLR 0 590 1 1307 77 0 0 chr11 94523316 94523472 -56260081 + AluSq SINE Alu 133 288 -25 23 0 0 0 chr11 94524042 94524065 -56259488 + AT_rich Low_complexity Low_complexity 1 23 0 252 352 34 23 chr11 94524093 94524269 -56259284 + MIR SINE MIR 49 226 -36 250 294 59 35 chr11 94524302 94524387 -56259166 - L2 LINE L2 -15 3257 3171 333 159 11 80 chr11 94524491 94524579 -56258974 + MIR SINE MIR 105 186 -76 542 161 0 0 chr11 94524649 94524742 -56258811 + MER5A DNA MER1_type 13 105 -84 372 214 58 29 chr11 94525265 94525368 -56258185 + L2 LINE L2 3121 3226 -46 1972 218 41 65 chr11 94525564 94526266 -56257287 - L1M4 LINE L1 -1128 5018 4334 2849 50 6 0 chr11 94526381 94526722 -56256831 + HERV17 LTR ERV1 5677 6019 -2607 306 51 0 0 chr11 94526715 94526754 -56256799 + HERV17 LTR ERV1 7510 7548 -1078 * 2518 34 3 3 chr11 94526744 94527036 -56256517 + HERV17 LTR ERV1 8335 8626 0 2592 48 29 0 chr11 94527036 94527349 -56256204 + LTR17 LTR ERV1 1 322 -458 1099 212 222 39 chr11 94528391 94528996 -56254557 - SATR1 Satellite Satellite -5 715 1 1185 189 310 2 chr11 94529026 94529499 -56254054 - SATR1 Satellite Satellite -3 618 1 1073 200 311 8 chr11 94529530 94530127 -56253426 - SATR1 Satellite Satellite -1 777 1 45089 38 1 3 chr11 94530151 94536310 -56247243 + L1PA3 LINE L1 9 6155 0 274 40 0 60 chr11 94536399 94536449 -56247104 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1285 170 0 18 chr11 94536451 94536680 -56246873 - AluJb SINE Alu -2 310 86 231 36 0 0 chr11 94536756 94536784 -56246769 + (T)n Simple_repeat Simple_repeat 1 28 0 19221 43 0 1 chr11 94536901 94539124 -56244429 - HERV17 LTR ERV1 -2996 5630 3411 1902 169 0 3 chr11 94539792 94540087 -56243466 + AluSc SINE Alu 1 294 -15 17844 119 28 79 chr11 94540123 94543364 -56240189 + L1P LINE L1 13 3087 -3059 230 197 0 45 chr11 94543482 94543548 -56240005 + AluSp/q SINE Alu 240 302 -1 17387 80 11 0 chr11 94543565 94546611 -56236942 + L1PA6 LINE L1 3074 6151 -3 1980 156 7 3 chr11 94546997 94547299 -56236254 + AluSp SINE Alu 1 303 -10 4878 113 48 6 chr11 94547732 94548425 -56235128 + LTR30 LTR ERV1 1 722 0 28266 87 4 3 chr11 94548425 94552031 -56231522 + HERV30 LTR ERV1 1 3608 -4649 4175 107 26 5 chr11 94552025 94552607 -56230946 + HERV30 LTR ERV1 7664 8257 0 * 4373 77 28 9 chr11 94552607 94553239 -56230314 + LTR30 LTR ERV1 1 722 0 32 0 0 0 chr11 94554737 94554769 -56228784 + AT_rich Low_complexity Low_complexity 1 32 0 1570 189 14 26 chr11 94554789 94555035 -56228518 - L1MB3 LINE L1 -30 6153 5906 207 0 0 0 chr11 94555035 94555058 -56228495 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2121 121 0 0 chr11 94555060 94555342 -56228211 - AluSx SINE Alu -30 282 1 1570 189 14 26 chr11 94555342 94555436 -56228117 - L1MB3 LINE L1 -278 5905 5814 180 0 0 0 chr11 94555436 94555456 -56228097 + (T)n Simple_repeat Simple_repeat 1 20 0 501 246 57 0 chr11 94555587 94555709 -56227844 - L1ME3A LINE L1 -5 6165 6037 267 79 0 0 chr11 94556244 94556282 -56227271 + (TC)n Simple_repeat Simple_repeat 1 38 0 336 210 0 0 chr11 94557085 94557147 -56226406 - L2 LINE L2 0 3313 3252 2096 115 4 0 chr11 94557769 94558048 -56225505 - AluSx SINE Alu -20 292 13 608 240 32 24 chr11 94558476 94558601 -56224952 - FLAM_A SINE Alu -5 128 3 428 309 41 21 chr11 94558995 94559329 -56224224 + MLT1K LTR MaLR 161 527 -61 198 0 0 0 chr11 94559329 94559351 -56224202 + (T)n Simple_repeat Simple_repeat 1 22 0 2292 110 7 3 chr11 94559482 94559790 -56223763 - AluSx SINE Alu -3 309 1 290 376 54 23 chr11 94559858 94560244 -56223309 + L2 LINE L2 2461 2858 -456 188 339 25 51 chr11 94560352 94560470 -56223083 + L2 LINE L2 3009 3123 -149 364 322 30 56 chr11 94561011 94561244 -56222309 - MIR SINE MIR -32 230 4 364 258 58 32 chr11 94561465 94561659 -56221894 + MLT1L LTR MaLR 374 615 0 217 330 126 0 chr11 94561679 94561861 -56221692 + MIR SINE MIR 30 231 -31 8902 96 34 16 chr11 94561959 94563217 -56220336 - HSMAR1 DNA Mariner -5 1282 2 787 292 121 17 chr11 94565272 94565744 -56217809 + LTR33 LTR ERVL 1 521 0 1390 149 79 5 chr11 94566087 94566301 -56217252 - AluJb SINE Alu -20 292 63 436 232 10 0 chr11 94566358 94566457 -56217096 + MER103 DNA DNA 3 102 -64 181 287 33 115 chr11 94566944 94567066 -56216487 - L2 LINE L2 -2 3270 3159 214 261 87 14 chr11 94567180 94567249 -56216304 - L2 LINE L2 -223 3049 2976 234 208 0 0 chr11 94568405 94568458 -56215095 + (TAA)n Simple_repeat Simple_repeat 1 53 0 565 307 93 9 chr11 94568468 94568683 -56214870 - MIR SINE MIR -17 245 13 254 318 24 40 chr11 94568809 94568935 -56214618 - MIR3 SINE MIR -71 137 14 190 263 66 26 chr11 94569293 94569369 -56214184 - MIR3 SINE MIR -5 203 125 223 345 92 29 chr11 94569384 94569558 -56213995 + MIR SINE MIR 2 186 -76 265 0 0 0 chr11 94569564 94569597 -56213956 + AluY SINE Alu 1 33 -275 198 222 0 0 chr11 94569724 94569760 -56213793 + L2 LINE L2 3261 3296 -17 738 263 116 4 chr11 94570777 94571009 -56212544 - MIR SINE MIR 0 262 5 239 278 0 0 chr11 94571039 94571093 -56212460 + L2 LINE L2 3252 3305 -8 23 33 0 0 chr11 94571240 94571270 -56212283 + AT_rich Low_complexity Low_complexity 1 30 0 1831 154 11 7 chr11 94571742 94572027 -56211526 - AluJo SINE Alu -26 286 1 722 203 85 0 chr11 94572144 94572297 -56211256 + FRAM SINE Alu 1 166 0 305 345 25 0 chr11 94572464 94572583 -56210970 + MIR SINE MIR 45 166 -96 234 0 0 0 chr11 94581049 94581075 -56202478 + (TG)n Simple_repeat Simple_repeat 2 27 0 285 285 23 39 chr11 94583270 94583400 -56200153 - MER103 DNA DNA -37 129 2 339 294 92 0 chr11 94584219 94584338 -56199215 + MER94 DNA DNA 1 130 -4 671 164 10 0 chr11 94584672 94584776 -56198777 + AluSq/x SINE Alu 2 106 -207 276 100 0 0 chr11 94584885 94584925 -56198628 + (A)n Simple_repeat Simple_repeat 1 40 0 1168 265 122 86 chr11 94585498 94585634 -56197919 - L2 LINE L2 -468 2846 2716 1360 149 90 12 chr11 94585634 94585889 -56197664 - ORSL DNA AcHobo 0 275 1 1168 265 122 86 chr11 94585889 94586587 -56196966 - L2 LINE L2 -598 2716 1982 191 227 204 0 chr11 94586625 94586713 -56196840 - L2 LINE L2 -604 2710 2605 623 229 142 42 chr11 94587289 94587529 -56196024 + L2 LINE L2 3032 3295 -18 284 234 44 102 chr11 94587676 94587813 -56195740 + L2 LINE L2 3095 3223 -49 272 286 76 0 chr11 94588325 94588430 -56195123 - L2 LINE L2 -2 3270 3158 739 276 97 0 chr11 94589832 94590049 -56193504 - MIR SINE MIR -6 256 19 219 327 87 0 chr11 94594111 94594215 -56189338 + MIR SINE MIR 131 243 -19 287 157 39 0 chr11 94594222 94594273 -56189280 - L2 LINE L2 0 3313 3261 212 324 59 10 chr11 94594335 94594437 -56189116 + L3 LINE CR1 1218 1324 -253 1947 146 0 3 chr11 94594437 94594738 -56188815 + AluJb SINE Alu 1 300 -12 662 321 104 32 chr11 94594863 94595268 -56188285 + L2 LINE L2 200 633 -2681 520 303 8 0 chr11 94595279 94595411 -56188142 + L2 LINE L2 3181 3313 0 440 266 36 29 chr11 94595431 94595570 -56187983 - MIR SINE MIR -44 218 79 623 195 17 8 chr11 94595579 94595697 -56187856 - MLT1B LTR MaLR 0 390 272 377 140 114 105 chr11 94595709 94595823 -56187730 - MLT1B LTR MaLR -275 115 1 219 300 17 17 chr11 94595824 94595884 -56187669 - MIR SINE MIR -190 72 13 249 304 21 48 chr11 94596003 94596155 -56187398 + MIR SINE MIR 33 183 -69 444 232 217 34 chr11 94596585 94596792 -56186761 - MIR SINE MIR 0 262 18 190 207 190 17 chr11 94597381 94597439 -56186114 - MER5A DNA MER1_type -29 160 93 2212 91 7 20 chr11 94597449 94597746 -56185807 - AluSp SINE Alu -20 293 1 790 154 0 66 chr11 94597787 94597923 -56185630 + AluSq/x SINE Alu 9 135 -177 22 0 0 0 chr11 94598033 94598055 -56185498 + AT_rich Low_complexity Low_complexity 1 22 0 396 249 32 90 chr11 94598055 94598244 -56185309 + L3 LINE CR1 1315 1492 -85 249 273 162 10 chr11 94598670 94598769 -56184784 - MIR SINE MIR -108 154 41 286 361 52 7 chr11 94598885 94599040 -56184513 - L2 LINE L2 -4 3268 3107 2654 7 0 7 chr11 94599137 94599430 -56184123 + AluY SINE Alu 1 291 -20 907 37 9 0 chr11 94599530 94599639 -56183914 + SVA Other Other 1274 1383 -3 2956 63 27 3 chr11 94599671 94600038 -56183515 - L1PA8 LINE L1 -5 6167 5792 4946 209 18 57 chr11 94600038 94601384 -56182169 - L1M4 LINE L1 -1812 4334 3041 6686 99 0 0 chr11 94601384 94602349 -56181204 - L1PA12 LINE L1 -1 6167 5187 3228 140 14 0 chr11 94602349 94602862 -56180691 + L1PA12 LINE L1 4661 5180 -966 840 168 16 5 chr11 94602868 94603053 -56180500 - L1M4 LINE L1 -3110 3036 2850 2159 102 0 7 chr11 94603477 94603780 -56179773 - AluSx SINE Alu 0 301 1 187 391 69 11 chr11 94604223 94604310 -56179243 + L2 LINE L2 3160 3251 -21 2140 165 21 71 chr11 94604566 94605002 -56178551 + MLT2D LTR ERVL 1 414 0 186 43 0 0 chr11 94605152 94605175 -56178378 + (ATG)n Simple_repeat Simple_repeat 2 24 0 272 282 26 0 chr11 94605182 94605260 -56178293 - MIR SINE MIR -10 252 173 772 187 16 0 chr11 94605262 94605385 -56178168 + FLAM_C SINE Alu 3 127 -16 1474 271 3 24 chr11 94605415 94605787 -56177766 + LTR16A LTR ERVL 87 450 0 2208 111 3 13 chr11 94605835 94606142 -56177411 + AluSq SINE Alu 1 304 -9 533 266 53 41 chr11 94606205 94606374 -56177179 - MIR SINE MIR -90 172 2 203 61 30 0 chr11 94606577 94606610 -56176943 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2298 111 0 0 chr11 94606948 94607254 -56176299 + AluSq SINE Alu 1 306 -7 192 40 0 0 chr11 94607296 94607321 -56176232 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 236 346 0 37 chr11 94607335 94607416 -56176137 - L2 LINE L2 -194 3078 3001 1391 187 23 109 chr11 94608485 94608880 -56174673 - MLT1A1 LTR MaLR 0 365 5 613 222 0 97 chr11 94609035 94609165 -56174388 - MER5B DNA MER1_type -19 159 49 2163 108 7 10 chr11 94609165 94609461 -56174092 + AluSx SINE Alu 1 295 -17 613 222 0 97 chr11 94609461 94609506 -56174047 - MER5B DNA MER1_type -129 49 1 2049 142 30 18 chr11 94609638 94609969 -56173584 + LTR32 LTR ERVL 15 349 -122 861 198 0 6 chr11 94609971 94610128 -56173425 + LTR32 LTR ERVL 316 471 0 2253 132 32 22 chr11 94610834 94611205 -56172348 + THE1C LTR MaLR 1 375 0 182 284 27 0 chr11 94611801 94611875 -56171678 + MIR SINE MIR 131 206 -56 31 26 0 0 chr11 94611883 94611921 -56171632 + AT_rich Low_complexity Low_complexity 1 38 0 483 265 153 27 chr11 94612005 94612079 -56171474 + MER112 DNA MER1_type 8 71 -189 1756 203 94 27 chr11 94612079 94612517 -56171036 + MLT1C LTR MaLR 1 467 0 483 265 153 27 chr11 94612517 94612665 -56170888 + MER112 DNA MER1_type 71 258 -2 184 70 47 47 chr11 94612803 94612846 -56170707 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1502 161 38 78 chr11 94612905 94613180 -56170373 - LTR37A LTR ERV1 0 426 170 2299 114 13 0 chr11 94613180 94613488 -56170065 - AluSx SINE Alu 0 312 1 1502 161 38 78 chr11 94613488 94613609 -56169944 - LTR37A LTR ERV1 -256 170 46 262 320 52 0 chr11 94613672 94613769 -56169784 - MLT1J LTR MaLR -81 430 329 188 298 132 16 chr11 94613886 94614007 -56169546 + L2 LINE L2 3011 3145 -168 477 322 45 28 chr11 94614363 94614540 -56169013 + MIR SINE MIR 1 180 -82 180 0 0 0 chr11 94614656 94614676 -56168877 + (T)n Simple_repeat Simple_repeat 1 20 0 2108 141 6 13 chr11 94614842 94615155 -56168398 - AluJb SINE Alu -1 311 1 814 139 0 69 chr11 94616636 94616780 -56166773 - FLAM_C SINE Alu -8 135 2 243 182 0 23 chr11 94616785 94616829 -56166724 + MIR SINE MIR 203 245 -17 1387 178 46 36 chr11 94616862 94617143 -56166410 - AluJo SINE Alu -28 284 1 294 260 202 0 chr11 94617244 94617348 -56166205 - L2 LINE L2 -9 3304 3180 199 265 59 98 chr11 94618038 94618140 -56165413 - L2 LINE L2 -236 3036 2939 1665 177 0 45 chr11 94618611 94618889 -56164664 + AluJb SINE Alu 1 265 -47 2347 86 0 7 chr11 94618889 94619190 -56164363 - AluY SINE Alu -12 299 1 1665 177 0 45 chr11 94619190 94619221 -56164332 + AluJb SINE Alu 265 296 -16 2581 80 0 0 chr11 94620198 94620510 -56163043 - AluSx SINE Alu 0 312 1 324 296 29 124 chr11 94620510 94620784 -56162769 + L2 LINE L2 3025 3272 0 259 352 31 23 chr11 94621381 94621509 -56162044 + L2 LINE L2 3137 3265 -7 355 294 98 7 chr11 94622267 94622410 -56161143 + MIR SINE MIR 3 158 -104 201 175 0 0 chr11 94622541 94622581 -56160972 + CT-rich Low_complexity Low_complexity 1 40 0 2385 80 0 3 chr11 94622907 94623206 -56160347 - AluY SINE Alu -11 300 3 194 310 0 46 chr11 94623286 94623373 -56160180 + MIR SINE MIR 156 238 -24 227 262 117 29 chr11 94623672 94623775 -56159778 + MIR SINE MIR 25 136 -72 * 260 351 168 5 chr11 94623766 94623974 -56159579 + L2 LINE L2 2836 3077 -195 808 223 6 30 chr11 94624019 94624185 -56159368 - MER58B DNA MER1_type -3 338 177 1640 198 3 28 chr11 94624191 94624510 -56159043 + AluJo SINE Alu 1 311 -1 239 366 97 0 chr11 94624575 94624668 -56158885 + L2 LINE L2 3121 3222 -50 300 53 0 0 chr11 94625410 94625448 -56158105 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr11 94625572 94625594 -56157959 + GC_rich Low_complexity Low_complexity 1 22 0 271 321 37 0 chr11 94626033 94626142 -56157411 - MIR3 SINE MIR -54 154 42 331 287 144 29 chr11 94626176 94626350 -56157203 - MIR SINE MIR -13 249 56 290 309 12 0 chr11 94626685 94626766 -56156787 + L2 LINE L2 3232 3313 0 3986 105 54 27 chr11 94626843 94626894 -56156659 - L1MB1 LINE L1 0 6168 6120 1664 176 28 0 chr11 94626894 94627184 -56156369 - AluJo SINE Alu -14 298 1 3986 105 54 27 chr11 94627184 94627758 -56155795 - L1MB1 LINE L1 -48 6120 5526 429 228 154 60 chr11 94628233 94628382 -56155171 + MER5A DNA MER1_type 6 168 -21 229 323 125 0 chr11 94628458 94628554 -56154999 - MIR SINE MIR -68 140 33 328 198 49 12 chr11 94628891 94628972 -56154581 - MIR3 SINE MIR -46 162 79 22 0 0 0 chr11 94630037 94630059 -56153494 + AT_rich Low_complexity Low_complexity 1 22 0 283 310 84 28 chr11 94630219 94630361 -56153192 + L2 LINE L2 3149 3298 -15 30 27 0 0 chr11 94630703 94630740 -56152813 + AT_rich Low_complexity Low_complexity 1 37 0 1948 151 21 30 chr11 94630747 94631086 -56152467 - L1PA16 LINE L1 -18 6148 5813 246 32 0 0 chr11 94631187 94631218 -56152335 + (TG)n Simple_repeat Simple_repeat 1 31 0 1747 166 3 21 chr11 94631218 94631502 -56152051 - AluJo SINE Alu -33 279 1 2737 265 44 51 chr11 94631679 94632911 -56150642 - L1ME LINE L1 -4865 1215 6 199 349 89 14 chr11 94632923 94633069 -56150484 - L2 LINE L2 -606 2708 2552 453 273 154 22 chr11 94633222 94633348 -56150205 - L2 LINE L2 -1153 2161 2053 1936 142 0 63 chr11 94633348 94633680 -56149873 + AluSx SINE Alu 1 311 -1 453 273 154 22 chr11 94633680 94633872 -56149681 - L2 LINE L2 -1261 2053 1801 224 292 188 0 chr11 94634154 94634250 -56149303 - L2 LINE L2 -950 2364 2251 246 306 50 41 chr11 94634790 94634911 -56148642 + MIR SINE MIR 86 207 -55 198 125 75 0 chr11 94634964 94635044 -56148509 + (TA)n Simple_repeat Simple_repeat 2 87 0 351 286 77 51 chr11 94635076 94635192 -56148361 + L1ME4a LINE L1 5715 5840 -281 1966 136 0 21 chr11 94635192 94635503 -56148050 + AluSx SINE Alu 1 305 0 351 286 77 51 chr11 94635503 94635581 -56147972 + L1ME4a LINE L1 5840 5915 -206 207 134 24 0 chr11 94636225 94636275 -56147278 + MIR SINE MIR 91 140 -122 219 311 134 8 chr11 94636280 94636399 -56147154 + L2 LINE L2 3134 3267 -5 2247 85 3 0 chr11 94636463 94636746 -56146807 + AluSx SINE Alu 1 284 -28 196 373 82 9 chr11 94637262 94637372 -56146181 - L2 LINE L2 -18 3254 3137 523 220 168 63 chr11 94637853 94638121 -56145432 + L2 LINE L2 2968 3263 -50 264 291 48 0 chr11 94638167 94638270 -56145283 + HAL1b LINE L1 1233 1340 -8 21 0 0 0 chr11 94638301 94638322 -56145231 + AT_rich Low_complexity Low_complexity 1 21 0 207 200 0 22 chr11 94638866 94638911 -56144642 + CT-rich Low_complexity Low_complexity 4 47 0 486 297 0 0 chr11 94639015 94639133 -56144420 + MIR SINE MIR 29 146 -62 182 331 36 58 chr11 94639720 94639859 -56143694 - L2 LINE L2 0 3272 3137 627 257 166 53 chr11 94640103 94640628 -56142925 + L2 LINE L2 1696 2279 -1035 180 354 100 15 chr11 94640688 94640818 -56142735 + L2 LINE L2 3167 3307 -6 236 292 73 0 chr11 94641681 94641777 -56141776 + MIR SINE MIR 48 150 -112 962 140 0 0 chr11 94641779 94641922 -56141631 + FLAM_C SINE Alu 1 143 0 322 226 75 9 chr11 94641924 94642030 -56141523 + MIR SINE MIR 136 248 -14 275 240 53 0 chr11 94642218 94642293 -56141260 + L2 LINE L2 3183 3261 -11 1313 172 22 56 chr11 94642315 94642554 -56140999 + MER33 DNA MER1_type 15 242 -2343 1671 157 46 14 chr11 94642554 94642834 -56140719 - AluJo SINE Alu -13 299 11 1313 172 22 56 chr11 94642834 94642913 -56140640 + MER33 DNA MER1_type 242 322 -2 324 316 46 14 chr11 94643108 94643287 -56140266 - MIR SINE MIR -48 214 30 293 278 151 0 chr11 94643981 94644107 -56139446 + MIR SINE MIR 47 191 -71 324 0 0 0 chr11 94644721 94644757 -56138796 + (TG)n Simple_repeat Simple_repeat 2 37 0 201 298 67 48 chr11 94645117 94645221 -56138332 - MIR SINE MIR -67 141 36 2271 111 0 3 chr11 94645506 94645812 -56137741 + AluSx SINE Alu 1 305 -7 195 314 57 14 chr11 94646722 94646792 -56136761 - MIR SINE MIR -173 89 17 835 123 0 58 chr11 94646934 94647072 -56136481 - FLAM_C SINE Alu -3 130 1 520 84 84 0 chr11 94647166 94647249 -56136304 + AluSq SINE Alu 2 91 -221 940 92 92 0 chr11 94647249 94647380 -56136173 + AluSp/q SINE Alu 154 296 -17 361 207 57 0 chr11 94647495 94647811 -56135742 + (TA)n Simple_repeat Simple_repeat 1 334 0 2566 84 0 0 chr11 94647819 94648130 -56135423 + AluY SINE Alu 1 311 0 29 47 0 0 chr11 94648279 94648322 -56135231 + GC_rich Low_complexity Low_complexity 1 43 0 270 0 0 0 chr11 94648341 94648371 -56135182 + (A)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr11 94648390 94648425 -56135128 + AT_rich Low_complexity Low_complexity 1 35 0 957 266 86 86 chr11 94648505 94648704 -56134849 + L1MC4a LINE L1 5386 5584 -2224 2421 81 3 3 chr11 94648704 94649011 -56134542 + AluSp SINE Alu 1 307 -6 957 266 86 86 chr11 94649011 94649025 -56134528 + L1MC4a LINE L1 5584 5597 -2211 2007 121 51 0 chr11 94649025 94649298 -56134255 + AluSx SINE Alu 1 287 -25 957 266 86 86 chr11 94649298 94649627 -56133926 + L1MC4a LINE L1 5596 5929 -1879 217 167 0 24 chr11 94649746 94649788 -56133765 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 2593 40 3 0 chr11 94650174 94650472 -56133081 + AluY SINE Alu 1 299 -12 444 304 54 38 chr11 94650479 94650792 -56132761 - L2 LINE L2 -351 2963 2646 2156 191 43 31 chr11 94650816 94651355 -56132198 + L1ME2 LINE L1 5561 6105 -59 500 193 0 0 chr11 94651385 94651468 -56132085 - AluJ/FLAM SINE Alu -228 84 2 196 239 75 30 chr11 94651507 94651574 -56131979 - L2 LINE L2 -660 2654 2585 188 227 23 0 chr11 94653201 94653245 -56130308 - L2 LINE L2 -54 3259 3215 281 328 37 12 chr11 94653284 94653443 -56130110 - MIR SINE MIR -72 136 16 230 354 8 16 chr11 94654026 94654153 -56129400 + CT-rich Low_complexity Low_complexity 1 126 0 358 308 1 0 chr11 94654786 94654902 -56128651 + MIR SINE MIR 31 148 -60 301 349 40 0 chr11 94654906 94655032 -56128521 - L2 LINE L2 -1 3271 3141 518 250 43 24 chr11 94655308 94655472 -56128081 - MIR SINE MIR -76 186 20 823 258 0 0 chr11 94655518 94655685 -56127868 - MER45A DNA AcHobo -11 167 1 2373 85 7 0 chr11 94655935 94656229 -56127324 - AluSp SINE Alu -17 296 1 1602 146 104 8 chr11 94656290 94656558 -56126995 + AluJb SINE Alu 7 300 -12 4272 56 34 0 chr11 94657026 94657562 -56125991 + MER41A LTR ERV1 1 554 0 216 0 0 0 chr11 94659065 94659089 -56124464 + (TA)n Simple_repeat Simple_repeat 2 25 0 210 191 0 0 chr11 94661573 94661620 -56121933 + CT-rich Low_complexity Low_complexity 4 50 0 220 345 77 36 chr11 94661623 94661791 -56121762 - L2 LINE L2 -1 3271 3097 225 294 89 55 chr11 94661865 94662011 -56121542 - L2 LINE L2 -214 3058 2908 2212 99 3 0 chr11 94663005 94663324 -56120229 + AluSx SINE Alu 1 320 0 1781 177 87 47 chr11 94663341 94663406 -56120147 - MLT1C LTR MaLR 0 467 406 2072 138 10 0 chr11 94663406 94663703 -56119850 - AluSx SINE Alu -12 300 1 1781 177 87 47 chr11 94663703 94664083 -56119470 - MLT1C LTR MaLR -61 406 4 181 227 0 0 chr11 94665733 94665777 -56117776 - MIR SINE MIR -60 202 159 2154 111 3 3 chr11 94666586 94666908 -56116645 + AluSg SINE Alu 1 310 0 186 43 0 0 chr11 94669070 94669093 -56114460 + (A)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr11 94669650 94669675 -56113878 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr11 94672364 94672388 -56111165 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 94672546 94672574 -56110979 + AT_rich Low_complexity Low_complexity 1 28 0 2275 81 0 3 chr11 94673271 94673577 -56109976 - AluSg SINE Alu 0 305 1 262 206 27 14 chr11 94673649 94673722 -56109831 - L1ME4a LINE L1 -80 6041 5968 21 71 0 0 chr11 94674699 94674741 -56108812 + GC_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr11 94675089 94675111 -56108442 + GC_rich Low_complexity Low_complexity 1 22 0 214 293 30 20 chr11 94675201 94675300 -56108253 + C-rich Low_complexity Low_complexity 4 103 0 263 182 83 16 chr11 94675525 94675599 -56107954 + MIR SINE MIR 80 154 -54 510 303 37 0 chr11 94676211 94676399 -56107154 + MIR SINE MIR 65 259 -3 375 23 0 0 chr11 94676402 94676446 -56107107 + (TG)n Simple_repeat Simple_repeat 2 45 0 292 235 305 32 chr11 94677553 94677740 -56105813 - MIR SINE MIR 0 262 25 273 331 31 31 chr11 94679346 94679476 -56104077 - L2 LINE L2 -10 3262 3133 285 263 103 45 chr11 94679569 94679725 -56103828 + L2 LINE L2 3149 3313 0 1688 174 17 7 chr11 94679980 94680273 -56103280 - AluJb SINE Alu -16 296 1 1770 82 0 0 chr11 94680362 94680582 -56102971 - AluY SINE Alu -9 302 83 1360 258 98 7 chr11 94680987 94681493 -56102060 + MLT1G LTR MaLR 10 590 0 523 292 26 62 chr11 94681534 94681729 -56101824 + ERVL-F LTR ERVL 5570 5757 -7 1648 243 96 13 chr11 94681733 94682182 -56101371 + MLT2F LTR ERVL 6 491 -172 37261 99 13 11 chr11 94682188 94687886 -56095667 - L1P2 LINE L1 -439 5715 11 811 137 0 0 chr11 94687915 94688039 -56095514 - AluY SINE Alu 0 311 188 649 254 35 6 chr11 94688045 94688214 -56095339 - MIR SINE MIR -86 176 3 1620 128 9 4 chr11 94688491 94688718 -56094835 + AluSg/x SINE Alu 69 296 -14 295 279 29 39 chr11 94688766 94688870 -56094683 - MIR3 SINE MIR -14 194 92 369 274 21 70 chr11 94689367 94689553 -56094000 - MIR3 SINE MIR -11 197 21 6213 131 39 25 chr11 94689832 94690350 -56093203 - L1MA9 LINE L1 -4 6308 5799 213 39 0 0 chr11 94690350 94690376 -56093177 + (TG)n Simple_repeat Simple_repeat 1 26 0 6213 131 39 25 chr11 94690376 94691069 -56092484 - L1MA9 LINE L1 -513 5799 5078 2187 115 20 0 chr11 94691069 94691364 -56092189 + AluSx SINE Alu 1 301 -11 6213 131 39 25 chr11 94691364 94691443 -56092110 - L1MA9 LINE L1 -1234 5078 5002 741 178 7 86 chr11 94691444 94691596 -56091957 - FLAM_C SINE Alu -2 141 2 715 137 17 0 chr11 94691597 94691714 -56091839 - L1MA9 LINE L1 -1131 5015 4897 1060 158 0 0 chr11 94691733 94691914 -56091639 + AluSg/x SINE Alu 124 304 0 2449 216 63 43 chr11 94691917 94691960 -56091593 - L1M1 LINE L1 -4519 2518 2477 2205 110 3 0 chr11 94691960 94692250 -56091303 + AluSg SINE Alu 1 291 -19 2449 216 63 43 chr11 94692250 94693302 -56090251 - L1M1 LINE L1 -4560 2477 1518 245 298 140 9 chr11 94693549 94693663 -56089890 - MIR SINE MIR -50 212 84 271 257 54 0 chr11 94693749 94693823 -56089730 + MIR SINE MIR 75 152 -110 435 230 53 102 chr11 94693827 94694053 -56089500 + MLT1L LTR MaLR 179 393 -222 1761 211 53 80 chr11 94694077 94694604 -56088949 + MLT2B1 LTR ERVL 1 513 -7 478 303 42 0 chr11 94694612 94694777 -56088776 + MLT1L LTR MaLR 432 603 -12 2899 6 0 0 chr11 94694986 94695297 -56088256 + AluY SINE Alu 1 311 0 231 339 17 34 chr11 94696127 94696245 -56087308 - MER5A DNA MER1_type -72 117 2 550 292 101 11 chr11 94696453 94696631 -56086922 - MER91A DNA MER1_type -1 195 2 238 196 206 31 chr11 94696869 94696966 -56086587 - MIR SINE MIR -30 232 119 1051 188 26 197 chr11 94697555 94697645 -56085908 - LTR16A1 LTR ERVL 0 457 353 1905 57 18 0 chr11 94697645 94697874 -56085679 + L1PA5 LINE L1 5922 6154 0 1051 188 26 197 chr11 94697874 94698327 -56085226 - LTR16A1 LTR ERVL -104 353 7 201 248 109 20 chr11 94699511 94699612 -56083941 + MIR3 SINE MIR 92 201 -7 273 321 30 38 chr11 94700236 94700367 -56083186 + MIR SINE MIR 2 131 -131 2399 92 3 13 chr11 94700559 94700873 -56082680 - AluSq SINE Alu -2 311 1 851 258 13 52 chr11 94700985 94701024 -56082529 + MIR SINE MIR 28 67 -195 2159 136 0 0 chr11 94701024 94701325 -56082228 + AluSx SINE Alu 1 301 -11 851 258 13 52 chr11 94701325 94701518 -56082035 + MIR SINE MIR 67 251 -11 665 229 131 120 chr11 94701540 94701636 -56081917 + MLT1K LTR MaLR 125 218 -370 1726 218 21 3 chr11 94701636 94701967 -56081586 - MER58B DNA MER1_type -4 337 1 665 229 131 120 chr11 94701967 94702328 -56081225 + MLT1K LTR MaLR 218 587 -1 429 259 59 7 chr11 94702392 94702527 -56081026 - MIR SINE MIR -7 255 114 296 48 24 0 chr11 94703268 94703310 -56080243 + (TA)n Simple_repeat Simple_repeat 2 44 0 2168 113 10 0 chr11 94703310 94703601 -56079952 - AluSx SINE Alu -13 299 6 346 239 35 35 chr11 94703879 94703992 -56079561 + L2 LINE L2 3160 3272 0 2422 128 13 18 chr11 94705318 94705715 -56077838 + MER61B LTR ERV1 2 396 -29 312 247 0 0 chr11 94705833 94705906 -56077647 + MIR SINE MIR 82 154 -108 2421 80 3 0 chr11 94705939 94706238 -56077315 + AluSp SINE Alu 1 300 -13 303 224 10 107 chr11 94706296 94706349 -56077204 + MIR SINE MIR 37 76 -132 2223 100 7 3 chr11 94706349 94706648 -56076905 - AluSx SINE Alu -8 304 5 303 224 10 107 chr11 94706648 94706708 -56076845 + MIR SINE MIR 76 140 -68 2414 81 0 0 chr11 94706805 94707102 -56076451 - AluSg SINE Alu -13 297 1 21 0 0 0 chr11 94707356 94707377 -56076176 + AT_rich Low_complexity Low_complexity 1 21 0 360 308 30 8 chr11 94707882 94708015 -56075538 - Tigger8 DNA MER2_type -9 657 522 543 141 16 70 chr11 94708443 94708571 -56074982 + MER53 DNA DNA 1 121 -68 602 204 48 14 chr11 94708667 94708814 -56074739 + L1ME4a LINE L1 5623 5774 -390 411 197 0 0 chr11 94708814 94708885 -56074668 - MER5A DNA MER1_type -118 71 1 915 276 55 0 chr11 94709707 94709961 -56073592 - Tigger8 DNA MER2_type -398 268 1 187 284 135 0 chr11 94710100 94710174 -56073379 - MIR SINE MIR -73 189 106 495 218 132 58 chr11 94710273 94710321 -56073232 - MER5A DNA MER1_type 0 189 146 261 0 0 0 chr11 94710321 94710350 -56073203 + (CA)n Simple_repeat Simple_repeat 2 30 0 495 218 132 58 chr11 94710350 94710475 -56073078 - MER5A DNA MER1_type -43 146 3 322 238 0 12 chr11 94710833 94710913 -56072640 + L1ME4a LINE L1 5969 6047 -74 1954 133 27 3 chr11 94711259 94711552 -56072001 - AluSx SINE Alu -12 300 1 2268 119 0 0 chr11 94711962 94712257 -56071296 + AluSx SINE Alu 1 295 -17 270 272 61 18 chr11 94712887 94713001 -56070552 - MLT1L LTR MaLR 0 615 497 598 294 6 24 chr11 94713156 94713326 -56070227 + MER58A DNA MER1_type 9 175 -49 2361 94 0 0 chr11 94714078 94714375 -56069178 + AluSg SINE Alu 1 297 -13 922 154 7 0 chr11 94714375 94714549 -56069004 + AluSg/x SINE Alu 135 309 0 1980 116 35 0 chr11 94714620 94714905 -56068648 - AluSc SINE Alu -14 295 1 217 238 167 12 chr11 94715003 94715087 -56068466 - MIR SINE MIR -6 256 160 490 315 26 68 chr11 94715223 94715340 -56068213 - MLT1L LTR MaLR -172 443 323 1494 117 13 208 chr11 94715340 94715483 -56068070 + AluSx SINE Alu 1 170 -132 2325 100 0 0 chr11 94715483 94715783 -56067770 + AluSc SINE Alu 1 300 -9 1494 117 13 208 chr11 94715783 94715795 -56067758 + AluSx SINE Alu 170 183 -119 1938 87 76 4 chr11 94715795 94716071 -56067482 + AluY SINE Alu 2 297 -14 1494 117 13 208 chr11 94716071 94716083 -56067470 + AluSx SINE Alu 183 196 -106 2162 125 0 0 chr11 94716083 94716380 -56067173 + AluSg SINE Alu 1 297 -13 1494 117 13 208 chr11 94716380 94716585 -56066968 + AluSx SINE Alu 196 302 0 490 315 26 68 chr11 94716585 94716775 -56066778 - MLT1L LTR MaLR -292 323 149 1131 194 82 0 chr11 94716777 94716983 -56066570 + MER58A DNA MER1_type 2 224 0 306 213 165 55 chr11 94717110 94717237 -56066316 - MIR SINE MIR -107 155 15 313 26 0 0 chr11 94717410 94717448 -56066105 - MER4E LTR ERV1 -12 767 730 3097 119 48 6 chr11 94717548 94718027 -56065526 - MER4E LTR ERV1 -290 489 1 2040 117 0 3 chr11 94718093 94718403 -56065150 - AluSg SINE Alu 0 309 1 2266 104 0 3 chr11 94718433 94718730 -56064823 + AluSp SINE Alu 1 296 -17 221 291 18 0 chr11 94718739 94718794 -56064759 + L2 LINE L2 3205 3260 -12 180 302 160 58 chr11 94719347 94719572 -56063981 + L2 LINE L2 2915 3162 -110 333 178 0 14 chr11 94720227 94720300 -56063253 - L1ME4a LINE L1 -3 6118 6047 245 265 96 30 chr11 94720401 94720567 -56062986 - L1ME4a LINE L1 -216 5905 5729 2165 118 10 7 chr11 94720568 94720874 -56062679 - AluSx SINE Alu -5 307 1 334 286 52 58 chr11 94720930 94721084 -56062469 + MIR SINE MIR 7 159 -103 1484 177 13 37 chr11 94721087 94721183 -56062370 + L1MB7 LINE L1 5735 5832 -352 2321 72 21 0 chr11 94721183 94721473 -56062080 + AluSp SINE Alu 1 296 -17 1484 177 13 37 chr11 94721473 94721676 -56061877 + L1MB7 LINE L1 5832 6027 -157 297 295 32 11 chr11 94721677 94721772 -56061781 - LTR67 LTR ERVL -354 203 107 2391 73 0 19 chr11 94721819 94722133 -56061420 + AluSg SINE Alu 1 308 -2 411 345 44 22 chr11 94722208 94722483 -56061070 - L2 LINE L2 -1164 2150 1870 412 241 147 29 chr11 94722578 94722748 -56060805 - MIR SINE MIR -71 191 2 906 152 0 15 chr11 94722970 94723102 -56060451 - FLAM_C SINE Alu -3 130 1 510 356 33 12 chr11 94723121 94723493 -56060060 + MLT1K LTR MaLR 77 480 -108 414 134 0 0 chr11 94723497 94723564 -56059989 + (TCCC)n Simple_repeat Simple_repeat 3 69 0 2139 122 0 7 chr11 94723564 94723882 -56059671 - AluSp SINE Alu 0 313 1 230 192 10 91 chr11 94723889 94723914 -56059639 + MLT1K LTR MaLR 490 515 -73 1637 187 0 23 chr11 94723914 94724213 -56059340 - AluJb SINE Alu -20 292 1 230 192 10 91 chr11 94724213 94724286 -56059267 + MLT1K LTR MaLR 515 580 -8 277 275 0 14 chr11 94724374 94724443 -56059110 + L2 LINE L2 3205 3272 0 2395 67 0 3 chr11 94724501 94724798 -56058755 + AluY SINE Alu 1 296 -15 761 246 111 41 chr11 94725521 94725765 -56057788 - MIR SINE MIR 0 262 2 372 245 157 117 chr11 94725798 94725874 -56057679 + L1ME4a LINE L1 5534 5605 -516 2093 114 13 25 chr11 94725874 94726049 -56057504 - AluSx SINE Alu 0 312 141 2253 87 3 17 chr11 94726049 94726348 -56057205 - AluSc SINE Alu -13 296 2 2093 114 13 25 chr11 94726348 94726488 -56057065 - AluSx SINE Alu -171 141 1 372 245 157 117 chr11 94726488 94726836 -56056717 + L1ME4a LINE L1 5605 5979 -142 1222 175 18 136 chr11 94727208 94727546 -56056007 + AluJo SINE Alu 1 298 -14 2722 68 63 3 chr11 94728014 94728380 -56055173 - L1PA13 LINE L1 0 6163 5776 2249 95 3 3 chr11 94728393 94728687 -56054866 + AluSq SINE Alu 1 294 -19 26 64 0 0 chr11 94728687 94728734 -56054819 + AT_rich Low_complexity Low_complexity 1 47 0 830 328 97 41 chr11 94728838 94729549 -56054004 - L2 LINE L2 -684 2630 1880 5980 148 27 18 chr11 94729557 94730747 -56052806 + L1MA9 LINE L1 5111 6311 -1 554 149 56 0 chr11 94730757 94730864 -56052689 + L1MA9 LINE L1 6161 6273 -39 2494 68 0 7 chr11 94730894 94731203 -56052350 + AluY SINE Alu 1 307 -4 1906 144 41 3 chr11 94731306 94731598 -56051955 + AluSx SINE Alu 5 307 -5 400 309 150 5 chr11 94731634 94731858 -56051695 - MIR SINE MIR 0 262 5 214 191 21 64 chr11 94732586 94732633 -56050920 + MER91C DNA MER1_type 62 106 -34 195 194 242 0 chr11 94732827 94732889 -56050664 - MIR SINE MIR 0 262 186 417 39 0 0 chr11 94734463 94734514 -56049039 + (TG)n Simple_repeat Simple_repeat 2 52 0 2205 110 7 0 chr11 94734618 94734910 -56048643 - AluSx SINE Alu -16 296 3 228 263 263 22 chr11 94734911 94735048 -56048505 + MIR SINE MIR 93 262 0 1931 136 0 33 chr11 94735100 94735401 -56048152 - AluSx SINE Alu -21 291 1 23 0 0 0 chr11 94735525 94735548 -56048005 + AT_rich Low_complexity Low_complexity 1 23 0 847 284 34 4 chr11 94736051 94736290 -56047263 + MIR SINE MIR 8 253 -9 327 358 0 0 chr11 94736442 94736551 -56047002 + L2 LINE L2 3203 3311 -2 2273 81 17 0 chr11 94736715 94737010 -56046543 - AluY SINE Alu -11 300 1 2171 151 40 3 chr11 94738778 94739103 -56044450 - MER1B DNA MER1_type 0 337 1 412 259 97 90 chr11 94740637 94740926 -56042627 - L2 LINE L2 -4 3268 2978 260 275 109 43 chr11 94740940 94741078 -56042475 + L2 LINE L2 3161 3307 -6 360 359 9 0 chr11 94741237 94741343 -56042210 + MIR SINE MIR 36 142 -66 2756 14 0 0 chr11 94741439 94741736 -56041817 + AluYa5 SINE Alu 1 297 -14 192 40 0 0 chr11 94741736 94741761 -56041792 + (TA)n Simple_repeat Simple_repeat 1 25 0 577 190 0 0 chr11 94742131 94742231 -56041322 - Charlie4 DNA MER1_type -16 1945 1846 2051 146 7 0 chr11 94742277 94742586 -56040967 + L1PA13 LINE L1 291 601 -6186 2006 127 11 3 chr11 94742628 94742912 -56040641 - AluSg SINE Alu -24 286 1 4914 213 15 0 chr11 94742912 94743905 -56039648 + L1PA13 LINE L1 2485 3492 -3305 2314 104 7 3 chr11 94744545 94744854 -56038699 + AluSg SINE Alu 1 310 0 2826 169 2 16 chr11 94745934 94746480 -56037073 + L1PA13 LINE L1 3478 4015 -2782 1932 103 52 4 chr11 94746507 94746779 -56036774 - AluSq SINE Alu -15 298 14 29 47 0 0 chr11 94746951 94746994 -56036559 + AT_rich Low_complexity Low_complexity 1 43 0 180 158 0 0 chr11 94747062 94747100 -56036453 + (TA)n Simple_repeat Simple_repeat 1 38 0 343 227 195 24 chr11 94747194 94747424 -56036129 - L1M4 LINE L1 -323 5855 5588 797 151 0 8 chr11 94747424 94747550 -56036003 + FLAM_C SINE Alu 12 136 -7 2135 120 3 10 chr11 94747725 94748033 -56035520 + AluSg SINE Alu 1 306 -4 2080 79 54 7 chr11 94749196 94749473 -56034080 - AluSx SINE Alu -11 301 12 193 278 67 67 chr11 94749537 94749627 -56033926 - L2 LINE L2 -22 3291 3202 2301 96 0 0 chr11 94749664 94749957 -56033596 + AluY SINE Alu 2 294 -17 341 17 69 0 chr11 94749957 94750015 -56033538 + (TA)n Simple_repeat Simple_repeat 2 63 0 828 201 6 28 chr11 94750174 94750353 -56033200 + MLT1J2 LTR MaLR 1 175 -275 1831 235 63 34 chr11 94750355 94750912 -56032641 + L1ME3 LINE L1 5571 6143 -19 307 301 0 11 chr11 94751072 94751165 -56032388 + MLT1I LTR MaLR 318 409 0 2006 73 0 8 chr11 94751737 94752027 -56031526 - AluY SINE Alu 0 323 36 448 299 17 28 chr11 94752210 94752387 -56031166 + MLT1I-int LTR MaLR 307 481 -890 236 302 47 47 chr11 94752752 94752858 -56030695 + MLT1I-int LTR MaLR 752 857 -514 23 78 0 0 chr11 94752887 94752938 -56030615 + AT_rich Low_complexity Low_complexity 1 51 0 1852 131 33 4 chr11 94752997 94753295 -56030258 + AluSx SINE Alu 1 306 0 1680 158 28 7 chr11 94754211 94754502 -56029051 + AluJo SINE Alu 1 297 -15 2166 119 7 0 chr11 94754672 94754965 -56028588 - AluSx SINE Alu -17 295 1 1194 288 38 31 chr11 94755501 94755755 -56027798 + MLT1J LTR MaLR 1 261 -250 2128 119 20 0 chr11 94755755 94756049 -56027504 - AluSx SINE Alu -12 300 1 1194 288 38 31 chr11 94756049 94756270 -56027283 + MLT1J LTR MaLR 261 479 -32 540 246 59 35 chr11 94756274 94756477 -56027076 + L2 LINE L2 3105 3312 -1 250 291 51 0 chr11 94756712 94756791 -56026762 + L3 LINE CR1 1470 1552 -25 329 241 234 14 chr11 94758776 94758921 -56024632 - MER5A DNA MER1_type -3 186 10 464 157 0 36 chr11 94759050 94759133 -56024420 - AluJ/FRAM SINE Alu -12 300 221 180 0 0 0 chr11 94759547 94759567 -56023986 + (TG)n Simple_repeat Simple_repeat 2 21 0 2237 111 7 3 chr11 94759930 94760237 -56023316 + AluSx SINE Alu 1 308 -4 244 367 35 33 chr11 94760281 94760451 -56023102 + MIR SINE MIR 20 189 -73 577 240 24 94 chr11 94760709 94760963 -56022590 - LTR27 LTR ERV1 0 636 401 721 198 0 0 chr11 94761202 94761318 -56022235 + FLAM_A SINE Alu 1 116 -17 2450 74 0 0 chr11 94762336 94762632 -56020921 + AluY SINE Alu 1 296 -15 1845 252 40 53 chr11 94763112 94763658 -56019895 - MER69B DNA AcHobo -1605 921 383 2257 108 0 0 chr11 94763658 94763953 -56019600 - AluSx SINE Alu -15 297 3 1845 252 40 53 chr11 94763953 94764052 -56019501 - MER69B DNA AcHobo -2143 383 284 4378 84 46 47 chr11 94764420 94765074 -56018479 + MER39B LTR ERV1 1 653 0 375 314 64 19 chr11 94765410 94765566 -56017987 - MIR SINE MIR -64 198 36 450 259 116 0 chr11 94765775 94765922 -56017631 + MIR SINE MIR 55 218 -44 319 325 0 0 chr11 94766295 94766375 -56017178 - MIR SINE MIR -148 114 35 2188 107 3 13 chr11 94766375 94766675 -56016878 - AluSq SINE Alu -16 297 1 21 0 0 0 chr11 94767236 94767257 -56016296 + AT_rich Low_complexity Low_complexity 1 21 0 192 236 208 28 chr11 94768901 94768973 -56014580 - L2 LINE L2 -49 3264 3180 242 186 0 0 chr11 94769444 94769487 -56014066 - HAL1 LINE L1 -898 1609 1567 538 277 54 54 chr11 94769693 94769974 -56013579 - L1MEd LINE L1 -4862 1257 977 1512 175 54 20 chr11 94769974 94770271 -56013282 - AluJb SINE Alu -5 307 1 538 277 54 54 chr11 94770271 94770284 -56013269 - L1MEd LINE L1 -5142 977 965 2193 117 0 10 chr11 94770284 94770592 -56012961 - AluSg SINE Alu -5 305 1 538 277 54 54 chr11 94770592 94770610 -56012943 - L1MEd LINE L1 -5153 966 944 2288 124 30 0 chr11 94770898 94771241 -56012312 - LTR28 LTR ERV1 -675 345 1 9239 132 17 24 chr11 94771243 94772072 -56011481 - LTR28-int LTR ERV1 -1 6995 6161 2165 110 0 3 chr11 94772072 94772363 -56011190 - AluSp SINE Alu -21 292 3 9239 132 17 24 chr11 94772363 94773235 -56010318 - LTR28-int LTR ERV1 -835 6161 2585 1335 127 73 124 chr11 94773235 94773550 -56010003 + MER46B DNA MER2_type 62 235 -1 1673 192 6 31 chr11 94773580 94773897 -56009656 + AluJo SINE Alu 1 309 -3 309 219 106 43 chr11 94774489 94774581 -56008972 + MIR SINE MIR 25 121 -96 2510 77 0 0 chr11 94774581 94774892 -56008661 - AluY SINE Alu 0 311 1 309 219 106 43 chr11 94774892 94774927 -56008626 + MIR SINE MIR 121 152 -65 231 304 76 0 chr11 94775022 94775101 -56008452 + MIR SINE MIR 168 252 -10 22 0 0 0 chr11 94775101 94775123 -56008430 + AT_rich Low_complexity Low_complexity 1 22 0 1233 151 57 28 chr11 94775176 94775388 -56008165 + MER20 DNA MER1_type 1 218 -1 2229 116 0 0 chr11 94775962 94776254 -56007299 - AluSg SINE Alu -18 292 1 315 262 0 19 chr11 94776256 94776359 -56007194 - L1M4 LINE L1 -1100 5046 4946 22 0 0 0 chr11 94776367 94776389 -56007164 + GC_rich Low_complexity Low_complexity 1 22 0 2018 127 3 3 chr11 94776409 94776716 -56006837 - AluSg SINE Alu -3 307 1 23 33 0 0 chr11 94776717 94776747 -56006806 + AT_rich Low_complexity Low_complexity 1 30 0 361 239 39 23 chr11 94776989 94777119 -56006434 - L1ME4a LINE L1 -11 6110 5979 306 313 23 16 chr11 94777243 94777371 -56006182 - L1ME4a LINE L1 -400 5721 5593 995 214 105 114 chr11 94777698 94778221 -56005332 - L1MB3 LINE L1 -313 5870 5352 4038 155 15 45 chr11 94778242 94778556 -56004997 - L1MD1 LINE L1 -7 6235 5913 2196 109 0 16 chr11 94778556 94778860 -56004693 + AluSx SINE Alu 1 299 -13 4038 155 15 45 chr11 94778860 94779299 -56004254 - L1MD1 LINE L1 -329 5913 5505 2092 139 0 0 chr11 94779425 94779720 -56003833 - AluSx SINE Alu -17 295 1 414 200 0 11 chr11 94779724 94779819 -56003734 + MIR SINE MIR 169 262 0 660 270 122 42 chr11 94780077 94780375 -56003178 - L1MC4 LINE L1 -89 7953 7609 1350 157 11 140 chr11 94780375 94780595 -56002958 - AluJo SINE Alu -1 311 153 2095 80 29 35 chr11 94780595 94780908 -56002645 - AluY SINE Alu 0 311 1 1350 157 11 140 chr11 94780908 94781044 -56002509 - AluJo SINE Alu -159 153 1 660 270 122 42 chr11 94781044 94781171 -56002382 - L1MC4 LINE L1 -433 7609 7494 6992 164 18 12 chr11 94781199 94782357 -56001196 - L1M1 LINE L1 -5657 1908 744 1886 233 53 34 chr11 94782354 94782882 -56000671 - L1MD2 LINE L1 -101 6258 5721 * 365 221 91 26 chr11 94782887 94783041 -56000512 - L1MD2 LINE L1 -1617 4529 4366 * 4483 173 35 21 chr11 94783032 94784058 -55999495 - L1MB8 LINE L1 0 6178 5168 1952 142 3 28 chr11 94784058 94784376 -55999177 - AluSx SINE Alu -2 310 1 4483 173 35 21 chr11 94784376 94784454 -55999099 - L1MB8 LINE L1 -1010 5168 5093 1907 160 0 7 chr11 94784454 94784760 -55998793 - AluSx SINE Alu -8 304 1 4483 173 35 21 chr11 94784760 94784852 -55998701 - L1MB8 LINE L1 -1085 5093 4960 591 231 68 23 chr11 94784846 94785067 -55998486 - L1MD2 LINE L1 -1758 4388 4158 * 252 264 9 28 chr11 94785072 94785178 -55998375 - L1MD2 LINE L1 -2061 4085 3982 892 267 7 4 chr11 94785286 94785556 -55997997 - L1M4 LINE L1 -933 5213 4943 2326 92 0 3 chr11 94786452 94786755 -55996798 - AluSc SINE Alu -7 302 1 298 70 14 56 chr11 94786840 94786911 -55996642 + (TA)n Simple_repeat Simple_repeat 2 69 0 28 0 0 0 chr11 94788108 94788136 -55995417 + AT_rich Low_complexity Low_complexity 1 28 0 2398 48 7 3 chr11 94788206 94788499 -55995054 + AluY SINE Alu 3 296 -15 2491 71 3 0 chr11 94788695 94789004 -55994549 + AluY SINE Alu 1 310 -1 383 326 56 23 chr11 94789144 94789359 -55994194 - L2 LINE L2 -823 2491 2270 1607 186 10 10 chr11 94789579 94789875 -55993678 + AluJo SINE Alu 1 296 -16 2011 85 37 11 chr11 94790060 94790351 -55993202 + AluSg SINE Alu 9 310 0 415 259 112 21 chr11 94790600 94790743 -55992810 - MIR SINE MIR -1 261 106 38 68 0 0 chr11 94791435 94791508 -55992045 + AT_rich Low_complexity Low_complexity 1 73 0 1658 177 0 26 chr11 94791601 94791912 -55991641 + AluJb SINE Alu 6 308 -4 2155 114 0 7 chr11 94792075 94792372 -55991181 - AluSg SINE Alu -15 295 1 22 0 0 0 chr11 94792394 94792416 -55991137 + AT_rich Low_complexity Low_complexity 1 22 0 2068 108 4 0 chr11 94792720 94793024 -55990529 - AluSc SINE Alu 0 305 1 299 280 13 0 chr11 94793225 94793300 -55990253 + MIR SINE MIR 3 78 -184 1780 185 0 0 chr11 94793355 94793657 -55989896 - AluSx SINE Alu -8 304 3 2177 88 10 0 chr11 94794666 94794960 -55988593 - AluY SINE Alu -14 297 1 2436 63 0 3 chr11 94795042 94795343 -55988210 - AluY SINE Alu -11 300 1 251 294 44 103 chr11 94795890 94796026 -55987527 - L2 LINE L2 -4 3268 3141 1619 124 100 0 chr11 94796137 94796432 -55987121 + AluSx SINE Alu 1 321 0 324 369 47 4 chr11 94796524 94796757 -55986796 - L2 LINE L2 -920 2394 2152 595 203 51 0 chr11 94796886 94797004 -55986549 + MIR SINE MIR 41 164 -98 500 307 62 28 chr11 94797007 94797186 -55986367 + L2 LINE L2 2694 2878 -436 23267 43 45 2 chr11 94797315 94800255 -55983298 + L1P LINE L1 3 3066 -3080 2145 85 0 0 chr11 94800355 94800625 -55982928 - AluSg SINE Alu -40 270 1 21 0 0 0 chr11 94800879 94800900 -55982653 + AT_rich Low_complexity Low_complexity 1 21 0 351 313 23 8 chr11 94801405 94801533 -55982020 - Tigger8 DNA MER2_type -9 657 528 24 53 0 0 chr11 94801533 94801571 -55981982 + AT_rich Low_complexity Low_complexity 1 38 0 522 138 8 73 chr11 94801966 94802089 -55981464 + MER53 DNA DNA 1 115 -74 580 204 48 14 chr11 94802190 94802337 -55981216 + L1ME4a LINE L1 5623 5774 -390 406 197 0 0 chr11 94802337 94802408 -55981145 - MER5A DNA MER1_type -118 71 1 891 274 56 0 chr11 94803232 94803484 -55980069 - Tigger8 DNA MER2_type -400 266 1 191 284 135 0 chr11 94803623 94803697 -55979856 - MIR SINE MIR -73 189 106 429 218 132 58 chr11 94803796 94803844 -55979709 - MER5A DNA MER1_type 0 189 146 261 0 0 0 chr11 94803844 94803873 -55979680 + (CA)n Simple_repeat Simple_repeat 2 30 0 429 218 132 58 chr11 94803873 94803998 -55979555 - MER5A DNA MER1_type -43 146 3 308 238 0 12 chr11 94804356 94804436 -55979117 + L1ME4a LINE L1 5969 6047 -74 1887 124 31 3 chr11 94804782 94805073 -55978480 - AluSg SINE Alu -11 299 1 256 306 0 0 chr11 94805100 94805172 -55978381 + MIR SINE MIR 185 256 -6 2166 116 0 35 chr11 94805291 94805602 -55977951 + AluSx SINE Alu 1 300 -12 29 20 0 39 chr11 94805656 94805679 -55977874 + AT_rich Low_complexity Low_complexity 1 23 -26 2076 101 35 0 chr11 94805679 94805966 -55977587 + AluSx SINE Alu 1 297 -15 29 20 0 39 chr11 94805966 94805993 -55977560 + AT_rich Low_complexity Low_complexity 23 49 0 2094 83 0 4 chr11 94806002 94806267 -55977286 + AluY SINE Alu 16 279 -32 198 0 0 0 chr11 94806268 94806290 -55977263 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 1607 142 0 4 chr11 94806319 94806552 -55977001 + AluSx SINE Alu 44 275 -37 207 0 0 0 chr11 94806560 94806583 -55976970 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1728 219 40 47 chr11 94806629 94807077 -55976476 + MLT2B1 LTR ERVL 5 449 -71 333 0 0 0 chr11 94807082 94807119 -55976434 + (CA)n Simple_repeat Simple_repeat 2 38 0 202 324 38 38 chr11 94807287 94807392 -55976161 - MIR SINE MIR -46 216 112 347 115 0 0 chr11 94808507 94808559 -55974994 + AluSp SINE Alu 1 52 -248 3089 136 89 12 chr11 94808559 94809073 -55974480 + MER41C LTR ERV1 1 554 0 1831 109 4 0 chr11 94809073 94809321 -55974232 + AluSp SINE Alu 49 297 -16 196 238 133 38 chr11 94809734 94809839 -55973714 + L2 LINE L2 3025 3139 -174 2234 107 7 0 chr11 94810454 94810762 -55972791 - AluSx SINE Alu -2 310 1 3818 9 0 0 chr11 94811720 94812149 -55971404 - L1PA2 LINE L1 -135 6020 5592 434 202 0 0 chr11 94812261 94812360 -55971193 - L1MDa LINE L1 -2172 4368 4270 2387 93 0 0 chr11 94812360 94812670 -55970883 - AluSg SINE Alu 0 310 1 613 174 164 51 chr11 94812765 94812960 -55970593 - MER20 DNA MER1_type -2 217 1 921 234 99 67 chr11 94812961 94813215 -55970338 - L1MDa LINE L1 -3540 3000 2756 2194 116 3 0 chr11 94813215 94813518 -55970035 - AluSx SINE Alu -8 304 1 921 234 99 67 chr11 94813518 94813975 -55969578 - L1MDa LINE L1 -3784 2756 2264 287 354 76 10 chr11 94815049 94815247 -55968306 - L2 LINE L2 -994 2320 2110 227 351 69 8 chr11 94816333 94816464 -55967089 - L3b LINE CR1 -81 1502 1364 1561 189 42 0 chr11 94816844 94817129 -55966424 - AluJo SINE Alu -15 297 1 1365 242 78 25 chr11 94818015 94818461 -55965092 - L1ME1 LINE L1 -67 6099 5630 2263 146 8 8 chr11 94818466 94818836 -55964717 - MLT1B LTR MaLR 0 390 21 1492 209 3 14 chr11 94818910 94819206 -55964347 - AluJo SINE Alu -19 293 1 3497 234 42 28 chr11 94819206 94820631 -55962922 - L1ME1 LINE L1 -559 5607 4166 1885 243 67 24 chr11 94820653 94821323 -55962230 - L1ME1 LINE L1 -2201 3945 3247 1171 255 20 8 chr11 94821319 94821672 -55961881 - L1ME1 LINE L1 -3412 2734 2378 * 244 171 0 0 chr11 94821702 94821743 -55961810 - MLT1L LTR MaLR -425 190 150 2429 91 0 0 chr11 94822510 94822819 -55960734 - AluSx SINE Alu -3 309 1 888 272 13 0 chr11 94823730 94823962 -55959591 - L1ME1 LINE L1 -19 6081 5847 * 1688 183 26 0 chr11 94823958 94824269 -55959284 - L1ME1 LINE L1 -494 5606 5288 486 167 26 133 chr11 94824323 94824485 -55959068 - L1ME1 LINE L1 -780 5300 5175 2255 116 0 0 chr11 94824485 94824795 -55958758 - AluY SINE Alu -1 310 1 486 167 26 133 chr11 94824795 94824896 -55958657 - L1ME1 LINE L1 -905 5175 5065 422 204 129 30 chr11 94824938 94825070 -55958483 - MLT1G1 LTR MaLR -446 149 5 2670 257 69 11 chr11 94825078 94826130 -55957423 - L1ME1 LINE L1 -1013 5067 3955 52 30 0 0 chr11 94826209 94826275 -55957278 + AT_rich Low_complexity Low_complexity 1 66 0 534 231 99 18 chr11 94826835 94827107 -55956446 - L1ME1 LINE L1 -4571 1509 1173 283 258 18 18 chr11 94827113 94827276 -55956277 + CT-rich Low_complexity Low_complexity 3 165 0 727 247 49 92 chr11 94827288 94827900 -55955653 - L1ME1 LINE L1 -4927 1051 466 306 327 0 28 chr11 94828103 94828210 -55955343 - L1ME1 LINE L1 -5639 431 328 312 227 146 18 chr11 94828376 94828486 -55955067 - L1ME1 LINE L1 -5934 136 13 1092 198 20 5 chr11 94828727 94828929 -55954624 - MER58A DNA MER1_type 0 224 20 300 70 0 0 chr11 94829127 94829170 -55954383 + (TG)n Simple_repeat Simple_repeat 2 44 0 22 35 0 0 chr11 94829190 94829219 -55954334 + AT_rich Low_complexity Low_complexity 1 29 0 5326 154 32 16 chr11 94829250 94830668 -55952885 - L1MA7 LINE L1 0 6291 4848 518 221 115 0 chr11 94830669 94830782 -55952771 + FLAM_A SINE Alu 1 126 -7 404 228 210 43 chr11 94830801 94830963 -55952590 - AluJo SINE Alu -121 191 3 287 303 28 48 chr11 94831136 94831281 -55952272 - MIR SINE MIR -47 215 74 2030 113 7 3 chr11 94831472 94831765 -55951788 + AluSx SINE Alu 16 309 -3 698 197 0 8 chr11 94831790 94831917 -55951636 - FLAM_A SINE Alu -7 126 1 2110 128 0 0 chr11 94832193 94832474 -55951079 - AluSg SINE Alu -23 287 7 303 28 0 0 chr11 94833457 94833493 -55950060 + (TG)n Simple_repeat Simple_repeat 1 36 0 267 316 0 0 chr11 94833827 94833906 -55949647 + GA-rich Low_complexity Low_complexity 3 81 0 2145 121 10 3 chr11 94834359 94834665 -55948888 + AluSq SINE Alu 1 308 -5 854 242 137 35 chr11 94834743 94835231 -55948322 - HAL1 LINE L1 -114 2393 1856 693 282 204 58 chr11 94835326 94836761 -55946792 - HAL1 LINE L1 -840 1667 25 1839 108 61 4 chr11 94836882 94837159 -55946394 - AluSp SINE Alu -20 293 1 315 283 85 9 chr11 94837695 94837801 -55945752 + L2 LINE L2 2872 2985 -328 489 299 60 54 chr11 94837895 94838209 -55945344 + L2 LINE L2 2979 3294 -19 4773 175 18 1 chr11 94838380 94839403 -55944150 - L1MB3 LINE L1 0 6183 5144 3275 229 26 11 chr11 94839400 94839575 -55943978 - L1 LINE L1 -830 5316 5145 * 2089 114 0 0 chr11 94839575 94839884 -55943669 - AluSq SINE Alu 0 311 3 3275 229 26 11 chr11 94839884 94840086 -55943467 - L1 LINE L1 -1001 5145 4947 2685 180 88 21 chr11 94840086 94840669 -55942884 - LTR26E LTR ERV1 0 622 1 3275 229 26 11 chr11 94840669 94841259 -55942294 - L1 LINE L1 -1199 4947 4333 838 136 121 0 chr11 94841645 94841785 -55941768 - FRAM SINE Alu 0 176 20 222 118 0 0 chr11 94842386 94842420 -55941133 + (GGGAGA)n Simple_repeat Simple_repeat 3 36 0 732 177 0 8 chr11 94842686 94842810 -55940743 - FLAM_C SINE Alu -10 123 1 21 0 0 0 chr11 94843009 94843030 -55940523 + AT_rich Low_complexity Low_complexity 1 21 0 2396 73 0 7 chr11 94843049 94843349 -55940204 - AluY SINE Alu -13 298 1 324 258 0 34 chr11 94843829 94843918 -55939635 + HsTC2 DNA Tc2 18 103 -1795 387 60 0 0 chr11 94844168 94844218 -55939335 + (CA)n Simple_repeat Simple_repeat 2 51 0 483 234 121 8 chr11 94845032 94845156 -55938397 - MIR SINE MIR -120 142 5 2020 131 0 3 chr11 94845511 94845801 -55937752 - AluSc SINE Alu -20 289 1 26 0 0 0 chr11 94846030 94846056 -55937497 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 94846341 94846363 -55937190 + AT_rich Low_complexity Low_complexity 1 22 0 386 322 8 8 chr11 94846479 94846597 -55936956 - L2 LINE L2 -5 3308 3191 6145 49 2 0 chr11 94846829 94847626 -55935927 - L1PA7 LINE L1 -4 6150 5352 41804 40 1 1 chr11 94847643 94853791 -55929762 - L1PA2 LINE L1 -3 6152 9 22 0 0 0 chr11 94853806 94853828 -55929725 + AT_rich Low_complexity Low_complexity 1 22 0 3024 107 2 4 chr11 94853832 94854301 -55929252 - L1M1 LINE L1 -492 5813 5346 7132 156 44 112 chr11 94854310 94856486 -55927067 - L1M1 LINE L1 -1398 4748 2721 223 315 73 36 chr11 94856606 94856771 -55926782 - L2 LINE L2 -594 2720 2550 494 318 63 28 chr11 94856873 94857159 -55926394 - L2 LINE L2 -960 2354 2059 366 289 42 16 chr11 94857180 94857321 -55926232 + MIR SINE MIR 45 189 -65 232 254 207 24 chr11 94857327 94857401 -55926152 + MER112 DNA MER1_type 1 60 -200 180 111 0 0 chr11 94857401 94857428 -55926125 + (TA)n Simple_repeat Simple_repeat 2 28 0 232 254 207 24 chr11 94857428 94857522 -55926031 + MER112 DNA MER1_type 60 200 -60 2218 105 7 0 chr11 94858281 94858577 -55924976 + AluSp SINE Alu 1 298 -15 297 0 0 0 chr11 94858589 94858622 -55924931 + (TG)n Simple_repeat Simple_repeat 2 34 0 612 0 0 0 chr11 94859423 94859491 -55924062 + (TA)n Simple_repeat Simple_repeat 2 69 0 1961 150 10 0 chr11 94859927 94860220 -55923333 - AluSx SINE Alu -9 303 8 815 301 74 35 chr11 94860338 94860932 -55922621 + L1MC4a LINE L1 5254 5870 -1938 651 231 0 8 chr11 94861700 94861830 -55921723 - FLAM_A SINE Alu -4 129 1 533 220 121 16 chr11 94862212 94862394 -55921159 + L1MC4 LINE L1 7402 7602 -440 541 311 57 54 chr11 94862776 94863072 -55920481 - L2 LINE L2 -6 3266 2970 1476 155 129 4 chr11 94863190 94863468 -55920085 + MER67A LTR ERV1 1 313 -230 825 209 40 31 chr11 94863727 94863952 -55919601 + MER67A LTR ERV1 317 543 0 236 259 0 0 chr11 94864320 94864378 -55919175 + MLT1J2 LTR MaLR 258 315 -135 320 371 33 0 chr11 94864405 94864556 -55918997 + L2 LINE L2 3111 3266 -6 525 261 25 19 chr11 94864770 94864927 -55918626 - MLT1J2 LTR MaLR -244 206 49 272 374 43 12 chr11 94865044 94865298 -55918255 - L2 LINE L2 -443 2871 2610 205 209 0 0 chr11 94866465 94866508 -55917045 + MIR SINE MIR 90 132 -130 2156 134 0 0 chr11 94866717 94867022 -55916531 - AluSx SINE Alu -6 306 2 229 270 54 14 chr11 94867067 94867141 -55916412 - L2 LINE L2 -15 3298 3222 235 324 167 0 chr11 94867251 94867359 -55916194 + MER5B DNA MER1_type 3 128 -50 420 305 118 88 chr11 94867581 94867886 -55915667 + L2 LINE L2 2957 3270 -2 233 314 78 0 chr11 94867869 94867971 -55915582 - L2 LINE L2 -278 2994 2885 * 196 307 145 86 chr11 94868021 94868311 -55915242 - L2 LINE L2 -1 3271 2965 314 185 22 109 chr11 94868348 94868440 -55915113 - L3 LINE CR1 -111 1466 1383 245 324 58 22 chr11 94868528 94868667 -55914886 + L2 LINE L2 3122 3265 -7 327 281 50 36 chr11 94869145 94869284 -55914269 + MIR3 SINE MIR 11 151 -57 192 164 0 149 chr11 94869300 94869367 -55914186 - L2 LINE L2 -544 2770 2714 207 0 0 0 chr11 94869401 94869424 -55914129 + (T)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr11 94869568 94869589 -55913964 + (T)n Simple_repeat Simple_repeat 1 21 0 2447 288 104 44 chr11 94869756 94871592 -55911961 - HAL1 LINE L1 -560 1947 1 207 0 0 0 chr11 94872574 94872597 -55910956 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 615 321 193 21 chr11 94872621 94873098 -55910455 - L3 LINE CR1 -312 1265 707 925 309 77 8 chr11 94873129 94873508 -55910045 - MLT1I LTR MaLR -4 405 1 552 342 48 4 chr11 94873516 94873747 -55909806 - L3 LINE CR1 -901 676 436 197 345 0 64 chr11 94873804 94873914 -55909639 + MIR SINE MIR 48 150 -112 184 290 86 21 chr11 94873979 94874072 -55909481 - L3 LINE CR1 -1185 392 294 666 336 39 12 chr11 94874322 94874652 -55908901 + MLT1I LTR MaLR 71 409 0 523 302 53 57 chr11 94875750 94875995 -55907558 + L2 LINE L2 3027 3270 -2 350 247 0 0 chr11 94876436 94876513 -55907040 - MIR SINE MIR -136 126 50 318 236 34 34 chr11 94876682 94876771 -55906782 + MIR SINE MIR 9 97 -165 492 250 103 4 chr11 94877745 94877909 -55905644 + MIR SINE MIR 30 218 -44 183 349 90 48 chr11 94878303 94878469 -55905084 - MER5B DNA MER1_type -5 173 1 415 260 81 43 chr11 94878597 94878783 -55904770 - MIR SINE MIR -56 206 13 249 291 189 8 chr11 94879587 94879714 -55903839 - L2 LINE L2 -7 3265 3116 215 349 68 40 chr11 94880486 94880735 -55902818 - L2 LINE L2 -705 2609 2354 257 343 19 9 chr11 94881274 94881382 -55902171 + L2 LINE L2 2929 3037 -235 814 234 119 0 chr11 94881440 94881658 -55901895 + MIR SINE MIR 7 250 -12 272 138 52 0 chr11 94881896 94881954 -55901599 + L1MA3 LINE L1 6243 6303 -2 240 231 55 44 chr11 94882067 94882158 -55901395 + MLT1K LTR MaLR 213 304 -284 396 333 18 68 chr11 94882350 94882569 -55900984 - MIR SINE MIR -32 230 23 1204 234 16 35 chr11 94883381 94884010 -55899543 + LTR49-int LTR ERV1 1303 2627 -3704 759 287 36 28 chr11 94884605 94884856 -55898697 - MIR SINE MIR -3 259 7 212 300 0 0 chr11 94885218 94885268 -55898285 + MIR SINE MIR 209 258 -4 533 244 72 31 chr11 94885769 94885962 -55897591 + L2 LINE L2 3109 3309 -4 851 98 45 0 chr11 94885984 94886117 -55897436 + MER85 DNA T2_type 1 139 0 2291 73 0 0 chr11 94886563 94886851 -55896702 - AluY SINE Alu -23 288 1 1159 130 148 22 chr11 94887181 94887411 -55896142 - L1MD1 LINE L1 -5 6237 5979 734 150 57 83 chr11 94887409 94887546 -55896007 - L1MD1 LINE L1 -504 5738 5606 * 2226 94 7 0 chr11 94887546 94887834 -55895719 - AluSg SINE Alu -13 297 8 734 150 57 83 chr11 94887834 94887889 -55895664 - L1MD1 LINE L1 -636 5606 5551 1908 99 8 0 chr11 94888477 94888730 -55894823 + AluSx SINE Alu 38 292 -20 2219 101 7 0 chr11 94889558 94889864 -55893689 + AluSp SINE Alu 6 313 0 2136 173 11 24 chr11 94889900 94890275 -55893278 - MER21B LTR ERV1 -89 774 405 778 224 11 22 chr11 94890276 94890459 -55893094 + L1ME1 LINE L1 5480 5660 -506 1766 129 60 85 chr11 94890477 94890536 -55893017 - L1MA7 LINE L1 -2 6289 6230 591 112 0 0 chr11 94890536 94890625 -55892928 + (TA)n Simple_repeat Simple_repeat 1 89 0 1766 129 60 85 chr11 94890625 94891533 -55892020 - L1MA7 LINE L1 -61 6230 5199 1299 144 20 0 chr11 94891534 94891735 -55891818 - AluJb SINE Alu -21 291 87 7294 166 32 13 chr11 94891736 94893068 -55890485 - L1MA7 LINE L1 -929 5217 3856 1616 138 101 41 chr11 94893068 94893386 -55890167 + MER1B DNA MER1_type 1 337 0 7294 166 32 13 chr11 94893386 94893468 -55890085 - L1MA7 LINE L1 -2290 3856 3777 2171 120 72 97 chr11 94893491 94893965 -55889588 - L1MA4A LINE L1 -11 6292 5831 2221 113 0 0 chr11 94893968 94894270 -55889283 - AluSx SINE Alu -10 302 1 2148 176 30 19 chr11 94894287 94894604 -55888949 - L1MA7 LINE L1 -2357 3789 3464 1840 145 99 65 chr11 94894604 94895018 -55888535 - MSTA LTR MaLR 0 428 1 2148 176 30 19 chr11 94895018 94895167 -55888386 - L1MA7 LINE L1 -2682 3464 3318 * 7145 53 2 0 chr11 94895136 94896287 -55887266 - L1PA5 LINE L1 -5 6149 4996 1275 183 64 3 chr11 94896312 94896623 -55886930 - L1MA7 LINE L1 -2884 3262 2933 733 285 28 0 chr11 94896614 94896863 -55886690 + L1ME1 LINE L1 5640 5895 -271 * 380 264 46 51 chr11 94896874 94897071 -55886482 + L1MA10 LINE L1 5945 6299 -26 1714 154 11 47 chr11 94897072 94897435 -55886118 - Tigger7 DNA MER2_type -1 2486 2137 646 217 0 0 chr11 94897432 94897547 -55886006 - Tigger7 DNA MER2_type -2371 116 2 * 239 317 0 17 chr11 94898122 94898182 -55885371 + MIR SINE MIR 6 64 -198 836 171 57 13 chr11 94898185 94898343 -55885210 + AluJb SINE Alu 137 301 -11 222 287 180 33 chr11 94898343 94898465 -55885088 + MIR SINE MIR 54 193 -69 249 33 0 0 chr11 94898627 94898657 -55884896 + (TG)n Simple_repeat Simple_repeat 1 30 0 2519 63 0 13 chr11 94899234 94899549 -55884004 + AluY SINE Alu 1 311 0 248 344 73 47 chr11 94899650 94899842 -55883711 - MIR SINE MIR -60 202 6 210 182 0 23 chr11 94901161 94901205 -55882348 + A-rich Low_complexity Low_complexity 3 45 0 21 36 0 0 chr11 94901310 94901338 -55882215 + AT_rich Low_complexity Low_complexity 1 28 0 376 268 108 57 chr11 94901639 94901833 -55881720 + MIR SINE MIR 59 262 0 818 288 100 15 chr11 94901879 94902219 -55881334 + HAL1 LINE L1 1538 1906 -601 24 32 0 0 chr11 94903827 94903858 -55879695 + AT_rich Low_complexity Low_complexity 1 31 0 294 73 0 0 chr11 94904492 94904533 -55879020 + (CA)n Simple_repeat Simple_repeat 2 42 0 14060 127 35 27 chr11 94904541 94904697 -55878856 - Tigger1 DNA MER2_type -1 2417 2264 2171 122 0 0 chr11 94904697 94904992 -55878561 - AluSg SINE Alu -15 295 1 14060 127 35 27 chr11 94904992 94906321 -55877232 - Tigger1 DNA MER2_type -154 2264 947 2009 119 20 3 chr11 94906321 94906614 -55876939 - AluSg SINE Alu -12 298 1 14060 127 35 27 chr11 94906614 94907293 -55876260 - Tigger1 DNA MER2_type -1471 947 229 1781 164 13 0 chr11 94907293 94907592 -55875961 + AluSx SINE Alu 1 303 -9 14060 127 35 27 chr11 94907592 94907794 -55875759 - Tigger1 DNA MER2_type -2189 229 30 1589 163 51 27 chr11 94907982 94908276 -55875277 - AluJo SINE Alu -2 310 10 2043 100 14 4 chr11 94908346 94908626 -55874927 - AluSc SINE Alu -3 306 24 352 236 158 0 chr11 94909140 94909267 -55874286 - L2 LINE L2 0 3313 3167 2221 115 3 0 chr11 94909524 94909829 -55873724 - AluSx SINE Alu -6 306 1 23 54 0 0 chr11 94910228 94910265 -55873288 + AT_rich Low_complexity Low_complexity 1 37 0 2320 104 0 0 chr11 94910337 94910646 -55872907 - AluSx SINE Alu -3 309 1 1318 233 30 24 chr11 94910786 94911030 -55872523 - MER58B DNA MER1_type -2079 341 93 1659 209 47 43 chr11 94911030 94911495 -55872058 - MLT1C LTR MaLR 0 467 1 1318 233 30 24 chr11 94911495 94911589 -55871964 - MER58B DNA MER1_type -2327 93 1 397 301 75 40 chr11 94911659 94911858 -55871695 - MIR SINE MIR -6 256 51 313 301 11 0 chr11 94912645 94912738 -55870815 + CT-rich Low_complexity Low_complexity 3 96 0 596 306 118 45 chr11 94913098 94913694 -55869859 - L2 LINE L2 -73 3240 2616 628 146 0 0 chr11 94913962 94914058 -55869495 - AluS SINE Alu -216 96 1 24 0 0 0 chr11 94914114 94914138 -55869415 + AT_rich Low_complexity Low_complexity 1 24 0 21 100 0 0 chr11 94914245 94914315 -55869238 + AT_rich Low_complexity Low_complexity 1 70 0 23 0 0 0 chr11 94914477 94914500 -55869053 + AT_rich Low_complexity Low_complexity 1 23 0 203 200 0 60 chr11 94916393 94916443 -55867110 + L2 LINE L2 3224 3270 -2 606 286 66 11 chr11 94916515 94916792 -55866761 + L1ME LINE L1 5511 5804 -366 2195 110 0 0 chr11 94917098 94917389 -55866164 - AluSx SINE Alu -21 291 1 1989 147 0 0 chr11 94917391 94917690 -55865863 - AluSx SINE Alu -13 299 1 24 0 0 0 chr11 94917964 94917988 -55865565 + AT_rich Low_complexity Low_complexity 1 24 0 734 168 7 7 chr11 94918513 94918650 -55864903 - AluJo SINE Alu -175 137 1 189 0 0 0 chr11 94918866 94918887 -55864666 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 1628 140 61 7 chr11 94918905 94919198 -55864355 - L1MC2 LINE L1 -14 6330 6022 262 79 0 0 chr11 94919204 94919242 -55864311 - L1MC2 LINE L1 -378 5966 5929 314 311 82 0 chr11 94919248 94919383 -55864170 + L2 LINE L2 3168 3313 0 508 244 62 44 chr11 94919439 94919599 -55863954 + MIR SINE MIR 9 171 -91 3066 120 45 43 chr11 94919600 94920107 -55863446 + MER1A DNA MER1_type 2 509 -20 300 210 50 60 chr11 94920112 94920212 -55863341 + MIR SINE MIR 164 262 0 605 238 79 57 chr11 94920531 94920570 -55862983 - L1ME1 LINE L1 -5 6161 6124 2556 200 25 25 chr11 94920570 94921120 -55862433 - MER44D DNA MER2_type 0 605 1 605 238 79 57 chr11 94921120 94921345 -55862208 - L1ME1 LINE L1 -42 6124 5891 1470 243 73 26 chr11 94921385 94921875 -55861678 - L1ME1 LINE L1 -5 6161 5649 2261 146 8 8 chr11 94921894 94922264 -55861289 - MLT1B LTR MaLR 0 390 21 1466 209 3 14 chr11 94922338 94922634 -55860919 - AluJo SINE Alu -19 293 1 3647 233 42 26 chr11 94922634 94924056 -55859497 - L1ME1 LINE L1 -559 5607 4166 1937 240 67 25 chr11 94924078 94924749 -55858804 - L1ME1 LINE L1 -2201 3945 3247 1204 256 20 8 chr11 94924745 94925100 -55858453 - L1ME1 LINE L1 -3412 2734 2376 * 2320 98 0 0 chr11 94925934 94926240 -55857313 - AluSx SINE Alu -6 306 1 882 276 13 0 chr11 94927151 94927383 -55856170 - L1ME1 LINE L1 -19 6081 5847 * 1642 181 32 3 chr11 94927379 94927689 -55855864 - L1ME1 LINE L1 -494 5606 5288 510 167 26 133 chr11 94927743 94927905 -55855648 - L1ME1 LINE L1 -780 5300 5175 2237 113 0 0 chr11 94927905 94928215 -55855338 - AluY SINE Alu -1 310 1 510 167 26 133 chr11 94928215 94928316 -55855237 - L1ME1 LINE L1 -905 5175 5065 418 204 129 30 chr11 94928358 94928490 -55855063 - MLT1G1 LTR MaLR -446 149 5 2675 260 69 12 chr11 94928498 94929551 -55854002 - L1ME1 LINE L1 -1013 5067 3955 52 30 0 0 chr11 94929630 94929696 -55853857 + AT_rich Low_complexity Low_complexity 1 66 0 452 219 60 4 chr11 94930256 94930528 -55853025 - L1ME1 LINE L1 -4571 1509 1173 271 256 31 12 chr11 94930534 94930694 -55852859 + CT-rich Low_complexity Low_complexity 3 165 0 798 248 45 89 chr11 94930706 94931310 -55852243 - L1ME1 LINE L1 -4927 1051 475 312 327 0 28 chr11 94931522 94931629 -55851924 - L1ME1 LINE L1 -5639 431 328 229 227 146 18 chr11 94931795 94931905 -55851648 - L1ME1 LINE L1 -5934 136 13 1088 198 20 5 chr11 94932147 94932349 -55851204 - MER58A DNA MER1_type 0 224 20 246 81 0 0 chr11 94932547 94932584 -55850969 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 33 0 0 chr11 94932604 94932634 -55850919 + AT_rich Low_complexity Low_complexity 1 30 0 5378 157 32 15 chr11 94932665 94934082 -55849471 - L1MA7 LINE L1 0 6291 4848 658 192 0 31 chr11 94934083 94934213 -55849340 + FLAM_A SINE Alu 1 126 -7 363 215 118 65 chr11 94934232 94934403 -55849150 - AluJo SINE Alu -111 191 3 303 297 28 48 chr11 94934567 94934712 -55848841 - MIR SINE MIR -47 215 74 1998 113 7 3 chr11 94934903 94935196 -55848357 + AluSx SINE Alu 16 309 -3 686 197 0 8 chr11 94935221 94935348 -55848205 - FLAM_A SINE Alu -7 126 1 2068 132 0 0 chr11 94935617 94935898 -55847655 - AluSg SINE Alu -23 287 7 303 28 0 0 chr11 94936881 94936917 -55846636 + (TG)n Simple_repeat Simple_repeat 1 36 0 295 291 0 0 chr11 94937251 94937330 -55846223 + GA-rich Low_complexity Low_complexity 3 81 0 2139 113 10 3 chr11 94937783 94938092 -55845461 + AluSq SINE Alu 1 311 -2 906 240 137 35 chr11 94938170 94938658 -55844895 - HAL1 LINE L1 -114 2393 1856 1191 281 203 58 chr11 94938753 94940189 -55843364 - HAL1 LINE L1 -840 1667 25 194 360 87 42 chr11 94940230 94940310 -55843243 + L2 LINE L2 1986 2061 -1253 1742 116 61 4 chr11 94940310 94940587 -55842966 - AluSp SINE Alu -20 293 1 194 360 87 42 chr11 94940587 94940795 -55842758 + L2 LINE L2 2061 2287 -1027 298 250 90 20 chr11 94941123 94941223 -55842330 + L2 LINE L2 2872 2978 -335 512 303 60 54 chr11 94941323 94941637 -55841916 + L2 LINE L2 2979 3294 -19 5095 194 23 6 chr11 94941808 94942836 -55840717 - L1MB3 LINE L1 0 6183 5174 2056 114 0 0 chr11 94942836 94943145 -55840408 - AluSq SINE Alu 0 311 3 5095 194 23 6 chr11 94943145 94943347 -55840206 - L1MB3 LINE L1 -1009 5174 4977 2717 178 88 21 chr11 94943347 94943930 -55839623 - LTR26E LTR ERV1 0 622 1 5095 194 23 6 chr11 94943930 94944577 -55838976 - L1MB3 LINE L1 -1206 4977 4273 825 129 121 0 chr11 94944907 94945047 -55838506 - FRAM SINE Alu 0 176 20 222 118 0 0 chr11 94945650 94945684 -55837869 + (GGGAGA)n Simple_repeat Simple_repeat 3 36 0 721 186 0 0 chr11 94945950 94946074 -55837479 - FLAM_C SINE Alu -19 124 1 21 0 0 0 chr11 94946273 94946294 -55837259 + AT_rich Low_complexity Low_complexity 1 21 0 2302 80 0 10 chr11 94946313 94946612 -55836941 - AluY SINE Alu -15 296 1 347 213 0 38 chr11 94947092 94947181 -55836372 + MER104 DNA Tc2 18 92 -88 282 56 0 0 chr11 94947431 94947467 -55836086 + (CA)n Simple_repeat Simple_repeat 2 37 0 181 167 167 0 chr11 94948196 94948238 -55835315 - L2 LINE L2 -568 2746 2698 482 234 121 8 chr11 94948277 94948401 -55835152 - MIR SINE MIR -120 142 5 1959 134 0 3 chr11 94948756 94949046 -55834507 - AluSc SINE Alu -20 289 1 26 0 0 0 chr11 94949275 94949301 -55834252 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 94949586 94949608 -55833945 + AT_rich Low_complexity Low_complexity 1 22 0 387 322 8 8 chr11 94949724 94949842 -55833711 - L2 LINE L2 -5 3308 3191 6389 49 4 0 chr11 94950074 94950870 -55832683 - L1PA7 LINE L1 -4 6465 5667 15947 24 0 0 chr11 94950888 94953528 -55830025 - L1PA2 LINE L1 -3 6152 3513 3376 37 2 0 chr11 94953528 94953963 -55829590 + L1PA2 LINE L1 3078 3513 -2633 * 30196 109 10 11 chr11 94953960 94958859 -55824694 - L1PA7 LINE L1 -781 5680 763 198 336 99 8 chr11 94959059 94959190 -55824363 - MIR SINE MIR -6 256 114 337 328 60 0 chr11 94959446 94959562 -55823991 + MIR3 SINE MIR 77 199 -9 1887 152 40 0 chr11 94959595 94959918 -55823635 - MER1B DNA MER1_type -1 336 1 427 362 17 6 chr11 94959941 94960115 -55823438 - MER5B DNA MER1_type -2 176 1 214 330 60 10 chr11 94960438 94960538 -55823015 + L2 LINE L2 3208 3312 -1 26 0 0 0 chr11 94960725 94960751 -55822802 + AT_rich Low_complexity Low_complexity 1 26 0 30 27 0 0 chr11 94960832 94960869 -55822684 + AT_rich Low_complexity Low_complexity 1 37 0 248 279 71 78 chr11 94961316 94961470 -55822083 + MIR SINE MIR 79 231 -31 1054 206 0 19 chr11 94962535 94962749 -55820804 + MER6B DNA MER2_type 1 210 0 2439 141 43 14 chr11 94963930 94964350 -55819203 + MSTB1 LTR MaLR 1 432 0 194 368 21 47 chr11 94964572 94964765 -55818788 - L2 LINE L2 -1414 1900 1713 627 258 106 7 chr11 94965331 94965569 -55817984 - L1MB7 LINE L1 -1 6183 5930 1642 256 152 38 chr11 94965574 94966214 -55817339 - MER21B LTR ERV1 -150 713 1 1815 191 93 95 chr11 94966225 94966306 -55817247 - L1ME1 LINE L1 -227 5939 5859 1841 142 36 0 chr11 94966306 94966587 -55816966 - AluSx SINE Alu -18 294 4 1815 191 93 95 chr11 94966587 94967402 -55816151 - L1ME1 LINE L1 -307 5859 4991 251 104 0 83 chr11 94967402 94967450 -55816103 + U5 snRNA snRNA 1 44 -72 1815 191 93 95 chr11 94967450 94967643 -55815910 - L1ME1 LINE L1 -1175 4991 4799 309 283 115 0 chr11 94967627 94967740 -55815813 + L1ME LINE L1 332 457 -5939 * 1035 242 43 128 chr11 94968543 94969351 -55814202 + L1ME LINE L1 782 1518 -4888 750 229 32 57 chr11 94969345 94969624 -55813929 + L1MC3 LINE L1 5890 6161 -1624 * 2345 89 0 0 chr11 94971000 94971302 -55812251 - AluSg SINE Alu -8 302 1 2341 96 0 0 chr11 94971535 94971838 -55811715 + AluSx SINE Alu 1 303 -9 2790 197 116 77 chr11 94972801 94973769 -55809784 - L1MC5 LINE L1 -32 7929 6907 2146 126 0 0 chr11 94973769 94974063 -55809490 - AluSc SINE Alu -15 294 1 2790 197 116 77 chr11 94974063 94974250 -55809303 - L1MC5 LINE L1 -1054 6907 6729 2144 111 0 7 chr11 94976280 94976577 -55806976 + AluSq SINE Alu 3 297 -16 305 190 102 51 chr11 94976770 94976907 -55806646 - L1M4 LINE L1 -324 5842 5706 436 109 44 51 chr11 94976908 94977045 -55806508 + CT-rich Low_complexity Low_complexity 4 139 0 2044 114 0 0 chr11 94977047 94977320 -55806233 - AluSx SINE Alu -39 273 1 1544 159 37 22 chr11 94977505 94977775 -55805778 + AluJb SINE Alu 10 283 -29 258 105 0 0 chr11 94977776 94977814 -55805739 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 189 107 0 0 chr11 94978220 94978248 -55805305 + (GA)n Simple_repeat Simple_repeat 1 28 0 1469 201 68 26 chr11 94978883 94979101 -55804452 - MLT1F1 LTR MaLR -210 357 119 2355 66 0 3 chr11 94979101 94979390 -55804163 - AluY SINE Alu -13 298 11 1469 201 68 26 chr11 94979390 94979510 -55804043 - MLT1F1 LTR MaLR -448 119 5 484 278 75 42 chr11 94979512 94979838 -55803715 - L1M4 LINE L1 -2349 3797 3451 2051 93 23 33 chr11 94979838 94980139 -55803414 - AluSc SINE Alu 0 309 12 484 278 75 42 chr11 94980139 94980188 -55803365 - L1M4 LINE L1 -2695 3451 3405 21 0 0 0 chr11 94980492 94980513 -55803040 + AT_rich Low_complexity Low_complexity 1 21 0 1911 131 35 0 chr11 94980695 94980977 -55802576 + AluSx SINE Alu 2 293 -19 218 121 61 0 chr11 94981611 94981677 -55801876 + (TA)n Simple_repeat Simple_repeat 2 71 0 203 125 25 0 chr11 94982395 94982435 -55801118 + (TG)n Simple_repeat Simple_repeat 2 42 0 660 26 0 0 chr11 94983166 94983178 -55800375 + (TTCC)n Simple_repeat Simple_repeat 1 90 0 660 26 0 0 chr11 94983178 94983256 -55800297 + (TTCC)n Simple_repeat Simple_repeat 2 79 0 1959 115 59 0 chr11 94983300 94983588 -55799965 - AluSp SINE Alu -6 307 3 1080 143 65 5 chr11 94985826 94986043 -55797510 - L1MA4A LINE L1 0 6303 6074 260 193 0 18 chr11 94986064 94986121 -55797432 - L1MA4A LINE L1 -334 5969 5914 186 43 0 0 chr11 94986270 94986293 -55797260 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 320 199 43 7 chr11 94986379 94986520 -55797033 + CT-rich Low_complexity Low_complexity 3 148 0 215 283 0 33 chr11 94986522 94986582 -55796971 + polypyrimidine Low_complexity Low_complexity 4 61 0 1092 99 0 0 chr11 94986966 94987107 -55796446 + AluSg SINE Alu 8 148 -162 2226 98 0 0 chr11 94987527 94987822 -55795731 + AluSx SINE Alu 1 295 -17 22 0 0 0 chr11 94988028 94988050 -55795503 + AT_rich Low_complexity Low_complexity 1 22 0 2491 171 7 80 chr11 94988308 94988886 -55794667 - L1MC1 LINE L1 -7 6326 5791 417 280 48 8 chr11 94988969 94989094 -55794459 - MIR SINE MIR -101 161 32 598 12 37 12 chr11 94989829 94989911 -55793642 + (TTATG)n Simple_repeat Simple_repeat 2 85 0 1896 152 0 0 chr11 94989911 94990188 -55793365 - AluSx SINE Alu -33 279 3 1261 192 0 0 chr11 94990192 94990416 -55793137 - AluJb SINE Alu -14 298 75 21 0 0 0 chr11 94990482 94990503 -55793050 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr11 94990576 94990614 -55792939 + AT_rich Low_complexity Low_complexity 1 38 0 2449 43 0 7 chr11 94990619 94990918 -55792635 + AluY SINE Alu 3 299 -12 2156 100 13 6 chr11 94990927 94991238 -55792315 + AluSq SINE Alu 1 313 0 1892 113 3 26 chr11 94991566 94991875 -55791678 - AluY SINE Alu -9 302 1 1596 128 28 0 chr11 94991986 94992059 -55791494 + AluSx SINE Alu 54 123 -189 270 81 0 0 chr11 94992059 94992096 -55791457 + (CA)n Simple_repeat Simple_repeat 2 38 0 1596 128 28 0 chr11 94992096 94992272 -55791281 + AluSx SINE Alu 123 310 -2 21 0 0 0 chr11 94992886 94992907 -55790646 + AT_rich Low_complexity Low_complexity 1 21 0 419 316 198 5 chr11 94993609 94993796 -55789757 + MIR SINE MIR 25 247 -15 243 353 50 22 chr11 94994123 94994262 -55789291 + MIR3 SINE MIR 3 145 -63 2060 142 0 13 chr11 94995162 94995473 -55788080 + AluSx SINE Alu 3 309 -3 25 0 0 0 chr11 94995607 94995632 -55787921 + AT_rich Low_complexity Low_complexity 1 25 0 278 341 139 17 chr11 94995676 94995849 -55787704 - MIR3 SINE MIR 0 208 15 21 36 0 0 chr11 94996453 94996481 -55787072 + AT_rich Low_complexity Low_complexity 1 28 0 686 261 54 61 chr11 94997726 94998021 -55785532 + L1MC/D LINE L1 5350 5642 -2166 1040 196 19 107 chr11 94998317 94998690 -55784863 - L1MB8 LINE L1 -3 6175 5836 23 54 0 0 chr11 94998694 94998731 -55784822 + AT_rich Low_complexity Low_complexity 1 37 0 260 287 81 44 chr11 94998825 94998961 -55784592 - MIR SINE MIR -2 260 120 832 169 6 49 chr11 94999109 94999292 -55784261 + MER3 DNA MER1_type 2 129 -80 3056 255 99 39 chr11 94999293 95000352 -55783201 + L1MEc LINE L1 40 1323 -5073 1923 169 3 0 chr11 95000352 95000648 -55782905 - AluSx SINE Alu -15 297 1 3056 255 99 39 chr11 95000648 95001007 -55782546 + L1MEc LINE L1 1323 1659 -4737 1472 214 92 25 chr11 95001072 95001268 -55782285 + L1MEc LINE L1 1921 2102 -4113 2111 137 3 0 chr11 95001268 95001574 -55781979 + AluSx SINE Alu 3 309 -3 1472 214 92 25 chr11 95001574 95001856 -55781697 + L1MEc LINE L1 2102 2405 -3810 606 194 59 41 chr11 95001849 95002019 -55781534 + L1MA10 LINE L1 6154 6326 -8 * 254 171 0 0 chr11 95002024 95002065 -55781488 + MER3 DNA MER1_type 162 202 -7 182 273 0 0 chr11 95002123 95002167 -55781386 + L2 LINE L2 3270 3313 0 260 336 97 0 chr11 95002176 95002289 -55781264 + MIR3 SINE MIR 76 199 -9 799 289 102 16 chr11 95002517 95002821 -55780732 + L2 LINE L2 2980 3309 -4 413 354 124 6 chr11 95003009 95003187 -55780366 - MIR SINE MIR -56 206 8 183 156 0 0 chr11 95003677 95003709 -55779844 + GA-rich Low_complexity Low_complexity 4 35 0 22 70 0 0 chr11 95003734 95003777 -55779776 + AT_rich Low_complexity Low_complexity 1 43 0 1456 119 46 0 chr11 95004657 95004875 -55778678 + MER30 DNA MER1_type 2 229 -1 21 0 0 0 chr11 95005956 95005977 -55777576 + AT_rich Low_complexity Low_complexity 1 21 0 3934 91 103 2 chr11 95005977 95006607 -55776946 - L1MA2 LINE L1 0 6304 5611 38 22 0 0 chr11 95007871 95007916 -55775637 + AT_rich Low_complexity Low_complexity 1 45 0 2610 131 33 26 chr11 95009758 95010248 -55773305 - L1MA3 LINE L1 0 6305 5813 43650 41 2 2 chr11 95010256 95016398 -55767155 - L1PA3 LINE L1 -4 6151 9 22 0 0 0 chr11 95016413 95016435 -55767118 + AT_rich Low_complexity Low_complexity 1 22 0 3193 107 2 4 chr11 95016439 95016908 -55766645 - L1MA3 LINE L1 -492 5813 5346 7790 156 44 112 chr11 95016917 95019093 -55764460 - L1MA3 LINE L1 -1398 4748 2721 354 311 221 24 chr11 95019213 95019766 -55763787 - L2 LINE L2 -594 2720 2059 366 289 42 16 chr11 95019787 95019928 -55763625 + MIR SINE MIR 45 189 -65 291 257 205 23 chr11 95019934 95020008 -55763545 + MER112 DNA MER1_type 1 60 -200 180 111 0 0 chr11 95020008 95020035 -55763518 + (TA)n Simple_repeat Simple_repeat 1 27 0 291 257 205 23 chr11 95020035 95020131 -55763422 + MER112 DNA MER1_type 60 202 -58 2228 98 7 0 chr11 95020888 95021184 -55762369 + AluSp SINE Alu 1 298 -15 279 0 0 0 chr11 95021198 95021229 -55762324 + (TG)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr11 95022030 95022054 -55761499 + (TA)n Simple_repeat Simple_repeat 2 25 0 272 349 12 0 chr11 95022762 95022845 -55760708 + MIR SINE MIR 59 142 -120 742 178 23 0 chr11 95023214 95023343 -55760210 + FLAM_C SINE Alu 1 132 -11 213 229 0 21 chr11 95023413 95023461 -55760092 + CT-rich Low_complexity Low_complexity 1 47 0 1046 182 0 6 chr11 95023847 95024023 -55759530 + FAM SINE Alu 1 175 0 205 330 20 0 chr11 95025164 95025264 -55758289 + CT-rich Low_complexity Low_complexity 1 102 0 * 287 314 0 0 chr11 95025195 95025265 -55758288 + polypyrimidine Low_complexity Low_complexity 2 71 0 204 179 0 0 chr11 95025272 95025311 -55758242 + (TG)n Simple_repeat Simple_repeat 2 40 0 694 173 220 9 chr11 95025746 95025960 -55757593 + MIR SINE MIR 1 259 -3 1138 183 47 8 chr11 95025989 95026246 -55757307 + L1MB8 LINE L1 5903 6169 -9 27 81 0 0 chr11 95026457 95026519 -55757034 + AT_rich Low_complexity Low_complexity 1 62 0 186 103 0 0 chr11 95027279 95027308 -55756245 + (CTG)n Simple_repeat Simple_repeat 2 30 0 189 171 0 0 chr11 95027732 95027767 -55755786 + (TG)n Simple_repeat Simple_repeat 2 36 0 326 244 33 0 chr11 95029238 95029328 -55754225 - MER5A DNA MER1_type -87 102 10 295 320 201 16 chr11 95029385 95029629 -55753924 - L3b LINE CR1 -118 1465 1177 1235 219 29 11 chr11 95029991 95030270 -55753283 - AluJo SINE Alu -18 294 11 417 268 129 79 chr11 95030288 95030871 -55752682 - L1ME4a LINE L1 -153 5968 5357 23 0 0 0 chr11 95030880 95030903 -55752650 + AT_rich Low_complexity Low_complexity 1 23 0 307 331 34 7 chr11 95032022 95032170 -55751383 - MIR3 SINE MIR -3 205 54 205 184 0 20 chr11 95032574 95032623 -55750930 + (TCTCTG)n Simple_repeat Simple_repeat 3 50 0 221 56 0 28 chr11 95032641 95032677 -55750876 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 184 353 86 7 chr11 95034828 95034967 -55748586 + L2 LINE L2 2070 2219 -1095 586 328 153 13 chr11 95035046 95035497 -55748056 - L2 LINE L2 -1878 1436 923 2066 117 10 0 chr11 95036056 95036347 -55747206 - AluSx SINE Alu -18 294 1 308 111 19 0 chr11 95036485 95036539 -55747014 + (TTTCC)n Simple_repeat Simple_repeat 2 56 0 234 192 0 0 chr11 95036540 95036592 -55746961 - Alu SINE Alu 0 302 251 369 0 0 0 chr11 95036611 95036652 -55746901 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 758 151 0 0 chr11 95036652 95036771 -55746782 - FLAM_C SINE Alu -24 119 1 7661 23 0 0 chr11 95037697 95038777 -55744776 - L1PA3 LINE L1 0 6155 5077 1496 137 32 54 chr11 95039786 95040008 -55743545 + MER33 DNA MER1_type 3 217 -2368 1630 192 0 20 chr11 95040008 95040300 -55743253 + AluJb SINE Alu 3 288 -24 1496 137 32 54 chr11 95040300 95040392 -55743161 + MER33 DNA MER1_type 217 310 -14 2109 131 0 6 chr11 95040397 95040711 -55742842 - AluSx SINE Alu 0 312 1 1671 200 3 13 chr11 95040811 95041116 -55742437 - AluJo SINE Alu -9 303 2 243 353 90 41 chr11 95041496 95041618 -55741935 + MIR3 SINE MIR 13 140 -68 227 283 87 33 chr11 95042118 95042210 -55741343 - MIR SINE MIR -77 185 89 234 204 0 0 chr11 95042449 95042498 -55741055 - MER69 DNA AcHobo -2109 417 369 636 194 0 0 chr11 95043034 95043142 -55740411 + FLAM_C SINE Alu 1 108 -35 393 123 0 0 chr11 95043142 95043207 -55740346 + (TG)n Simple_repeat Simple_repeat 2 66 0 263 114 23 0 chr11 95043207 95043251 -55740302 + (TA)n Simple_repeat Simple_repeat 1 45 0 28 79 0 0 chr11 95043336 95043399 -55740154 + AT_rich Low_complexity Low_complexity 1 63 0 23 0 0 0 chr11 95043997 95044020 -55739533 + AT_rich Low_complexity Low_complexity 1 23 0 2306 74 3 7 chr11 95044020 95044317 -55739236 - AluSq SINE Alu -17 296 1 301 267 57 9 chr11 95044614 95044719 -55738834 - MIR SINE MIR -62 200 91 204 125 0 0 chr11 95044860 95044892 -55738661 + (TA)n Simple_repeat Simple_repeat 1 32 0 201 39 0 0 chr11 95044909 95044935 -55738618 + (TG)n Simple_repeat Simple_repeat 2 27 0 2168 112 0 10 chr11 95045021 95045326 -55738227 - AluSx SINE Alu -10 302 1 28 0 0 0 chr11 95045326 95045354 -55738199 + AT_rich Low_complexity Low_complexity 1 28 0 2067 132 3 0 chr11 95045497 95045785 -55737768 - AluSx SINE Alu -23 289 1 2154 131 0 0 chr11 95045871 95046176 -55737377 - AluSq SINE Alu -8 305 1 234 300 210 30 chr11 95046322 95046555 -55736998 + L2 LINE L2 2696 2970 -344 1913 110 38 28 chr11 95046727 95047017 -55736536 - AluSx SINE Alu -8 304 12 1354 203 59 60 chr11 95047044 95047491 -55736062 - L1ME1 LINE L1 -9 6157 5724 314 208 91 0 chr11 95047846 95047923 -55735630 - MIR SINE MIR -84 178 95 218 268 18 0 chr11 95048645 95048701 -55734852 + L2 LINE L2 2676 2732 -582 207 363 194 0 chr11 95049026 95049150 -55734403 + L2 LINE L2 3117 3264 -8 350 133 80 27 chr11 95049668 95049743 -55733810 - L2 LINE L2 -5 3308 3230 874 325 48 10 chr11 95050027 95050341 -55733212 + MLT1I LTR MaLR 67 392 -17 596 178 0 78 chr11 95050342 95050471 -55733082 - MER5A DNA MER1_type 0 189 71 482 190 111 111 chr11 95050475 95050612 -55732941 - Charlie2 DNA MER1_type -2646 216 77 2333 94 0 3 chr11 95050612 95050920 -55732633 - AluSq SINE Alu -6 307 1 482 190 111 111 chr11 95050920 95050998 -55732555 - Charlie2 DNA MER1_type -2784 78 1 193 238 0 0 chr11 95051137 95051179 -55732374 + MIR SINE MIR 100 141 -121 2262 104 16 0 chr11 95051410 95051717 -55731836 + AluSq SINE Alu 1 312 -1 2206 102 0 7 chr11 95051931 95052235 -55731318 + AluSg1 SINE Alu 1 302 -7 4767 118 105 162 chr11 95053663 95055007 -55728546 - pTR5 LTR ERV1 0 2438 1172 2278 84 0 0 chr11 95055751 95056035 -55727518 + AluSc SINE Alu 1 284 -25 198 0 0 0 chr11 95056053 95056075 -55727478 + (TATG)n Simple_repeat Simple_repeat 2 23 0 706 184 0 0 chr11 95057203 95057312 -55726241 + FLAM_A SINE Alu 6 114 -28 1574 106 49 8 chr11 95057527 95057792 -55725761 - L1MA5A LINE L1 -10 6287 6012 252 0 0 0 chr11 95057792 95057820 -55725733 + (T)n Simple_repeat Simple_repeat 1 28 0 261 0 0 0 chr11 95057852 95057881 -55725672 + (G)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr11 95057881 95057902 -55725651 + GC_rich Low_complexity Low_complexity 1 21 0 513 93 0 0 chr11 95058027 95058102 -55725451 - AluSq/x SINE Alu -185 128 54 2253 81 0 23 chr11 95058213 95058523 -55725030 + AluY SINE Alu 1 303 -8 2319 93 6 3 chr11 95058851 95059163 -55724390 - AluSq SINE Alu 0 313 1 2429 53 0 10 chr11 95059169 95059468 -55724085 - AluY SINE Alu -13 298 3 2015 99 54 3 chr11 95059479 95059773 -55723780 - AluY SINE Alu -2 309 1 23 0 0 0 chr11 95059797 95059820 -55723733 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 95060744 95060765 -55722788 + AT_rich Low_complexity Low_complexity 1 21 0 705 221 55 33 chr11 95061958 95062201 -55721352 + MLT1B LTR MaLR 1 232 -164 1076 228 0 0 chr11 95062239 95062441 -55721112 + MLT1B LTR MaLR 187 388 -2 25 51 0 0 chr11 95062588 95062627 -55720926 + AT_rich Low_complexity Low_complexity 1 39 0 2321 94 0 0 chr11 95062721 95063009 -55720544 - AluSx SINE Alu -24 288 1 709 165 50 149 chr11 95063441 95063683 -55719870 - MER20 DNA MER1_type -1 218 1 483 291 70 107 chr11 95063713 95063888 -55719665 - L3 LINE CR1 -7 1570 1411 2168 108 7 0 chr11 95063888 95064185 -55719368 - AluSp SINE Alu -14 299 1 483 291 70 107 chr11 95064185 95064336 -55719217 - L3 LINE CR1 -166 1411 1256 1537 140 120 29 chr11 95065476 95065784 -55717769 - MER44D DNA MER2_type -2 607 2 1144 265 104 47 chr11 95065902 95066412 -55717141 + MLT1H LTR MaLR 3 541 -8 28 0 0 0 chr11 95066615 95066643 -55716910 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 95067473 95067495 -55716058 + AT_rich Low_complexity Low_complexity 1 22 0 198 205 231 51 chr11 95067924 95068002 -55715551 - L2 LINE L2 0 3272 3181 27 62 0 0 chr11 95068759 95068807 -55714746 + AT_rich Low_complexity Low_complexity 1 48 0 1770 199 0 3 chr11 95068843 95069149 -55714404 - AluSx SINE Alu -7 305 1 222 248 108 62 chr11 95069544 95069673 -55713880 - MIR SINE MIR -4 258 124 1845 59 0 0 chr11 95069719 95069941 -55713612 - AluY SINE Alu -4 307 86 9443 228 34 10 chr11 95070563 95073875 -55709678 - L1PA13 LINE L1 -2027 4770 1354 304 169 51 0 chr11 95073949 95074008 -55709545 + MSTD LTR MaLR 325 386 -10 378 263 30 38 chr11 95074018 95074151 -55709402 + MIR SINE MIR 131 262 0 2461 135 11 68 chr11 95076821 95077280 -55706273 + Tigger2a DNA MER2_type 2 434 0 5327 137 18 16 chr11 95077752 95078633 -55704920 + L1MC1 LINE L1 5428 6310 -23 207 0 0 0 chr11 95078633 95078656 -55704897 + (T)n Simple_repeat Simple_repeat 1 23 0 1330 152 23 35 chr11 95078846 95078876 -55704677 - L1MA5A LINE L1 -126 6052 6023 2306 91 3 25 chr11 95078876 95079195 -55704358 - AluSx SINE Alu 0 312 1 1330 152 23 35 chr11 95079195 95079440 -55704113 - L1MA5A LINE L1 -155 6023 5783 415 159 0 0 chr11 95079434 95079503 -55704050 - L1MA5A LINE L1 -875 5271 5203 * 21 36 0 0 chr11 95079701 95079729 -55703824 + AT_rich Low_complexity Low_complexity 1 28 0 1045 292 202 13 chr11 95080486 95080962 -55702591 + L2 LINE L2 2136 2701 -613 207 0 0 0 chr11 95080962 95080985 -55702568 + (T)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr11 95081009 95081034 -55702519 + GC_rich Low_complexity Low_complexity 1 25 0 2213 105 0 34 chr11 95081153 95081476 -55702077 - AluSx SINE Alu 0 312 1 959 325 94 9 chr11 95081479 95081869 -55701684 + L2 LINE L2 2690 3152 -161 195 42 0 0 chr11 95081869 95081893 -55701660 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 959 325 94 9 chr11 95081893 95082066 -55701487 + L2 LINE L2 3152 3309 -4 6330 53 1 4 chr11 95083044 95083847 -55699706 - L1PA8A LINE L1 -27 6104 5304 2281 89 3 0 chr11 95084024 95084316 -55699237 - AluSp SINE Alu -20 293 1 442 243 138 21 chr11 95084641 95084830 -55698723 + MIR SINE MIR 39 249 -13 200 268 56 14 chr11 95085867 95085938 -55697615 + L2 LINE L2 3187 3260 -12 434 254 0 49 chr11 95086239 95086361 -55697192 + MIR SINE MIR 147 262 0 183 281 101 85 chr11 95086558 95086757 -55696796 - L2 LINE L2 -481 2833 2632 2114 124 7 0 chr11 95088140 95088438 -55695115 + AluSx SINE Alu 1 300 -12 2134 113 6 10 chr11 95088439 95088750 -55694803 + AluSq SINE Alu 1 310 -3 1885 133 52 35 chr11 95088793 95089162 -55694391 - THE1C LTR MaLR 0 375 1 469 353 0 8 chr11 95089207 95089340 -55694213 - L2 LINE L2 -3 3269 3138 196 241 19 37 chr11 95089734 95089788 -55693765 - MIR SINE MIR -1 261 209 456 256 165 43 chr11 95090049 95090279 -55693274 + MIR SINE MIR 5 262 0 180 0 0 0 chr11 95090282 95090302 -55693251 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 488 343 50 41 chr11 95090302 95090544 -55693009 - L2 LINE L2 -17 3255 3012 1560 200 7 10 chr11 95090890 95091185 -55692368 - AluJo SINE Alu -18 294 1 2231 131 3 20 chr11 95092715 95093058 -55690495 + MER1B DNA MER1_type 1 337 0 355 278 115 16 chr11 95093086 95093248 -55690305 + MIR SINE MIR 38 206 -40 1703 177 0 39 chr11 95093722 95094032 -55689521 + AluJo SINE Alu 1 298 -14 22 56 0 0 chr11 95094913 95094949 -55688604 + AT_rich Low_complexity Low_complexity 1 36 0 2291 81 0 3 chr11 95095125 95095442 -55688111 + AluSq SINE Alu 1 316 0 31 26 0 0 chr11 95095689 95095727 -55687826 + AT_rich Low_complexity Low_complexity 1 38 0 1878 155 10 10 chr11 95096350 95096653 -55686900 - AluSx SINE Alu -9 303 1 585 316 134 26 chr11 95097542 95097884 -55685669 + L2 LINE L2 2935 3313 0 22 0 0 0 chr11 95099483 95099505 -55684048 + AT_rich Low_complexity Low_complexity 1 22 0 1113 117 98 24 chr11 95100066 95100271 -55683282 + L1PA16 LINE L1 5947 6166 0 788 188 59 12 chr11 95100271 95100441 -55683112 + MLT1B LTR MaLR 168 345 -45 25 0 0 0 chr11 95100629 95100654 -55682899 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr11 95100675 95100703 -55682850 + AT_rich Low_complexity Low_complexity 1 28 0 240 143 0 0 chr11 95100728 95100770 -55682783 + (TA)n Simple_repeat Simple_repeat 1 42 0 1970 239 58 47 chr11 95101436 95102119 -55681434 - L1MEc LINE L1 -3716 2502 1855 1592 219 33 0 chr11 95102119 95102448 -55681105 - MER58B DNA MER1_type 0 341 2 1970 239 58 47 chr11 95102448 95102721 -55680832 - L1MEc LINE L1 -4363 1855 1587 22 35 0 0 chr11 95103521 95103550 -55680003 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 95103797 95103818 -55679735 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 95103915 95103937 -55679616 + AT_rich Low_complexity Low_complexity 1 22 0 968 250 28 102 chr11 95104345 95105000 -55678553 - L1MC5 LINE L1 -54 7907 7302 1632 220 58 56 chr11 95105175 95105783 -55677770 - L1MC5 LINE L1 -728 7233 6625 180 0 0 0 chr11 95105901 95105921 -55677632 + (TG)n Simple_repeat Simple_repeat 1 20 0 192 40 0 0 chr11 95105921 95105946 -55677607 + (GA)n Simple_repeat Simple_repeat 2 26 0 904 288 101 21 chr11 95105948 95106323 -55677230 - L2 LINE L2 -444 2870 2466 181 382 59 29 chr11 95106718 95106820 -55676733 - L2 LINE L2 -19 3253 3149 23 33 0 0 chr11 95106820 95106850 -55676703 + AT_rich Low_complexity Low_complexity 1 30 0 208 250 77 0 chr11 95107395 95107447 -55676106 + L2 LINE L2 3258 3313 0 183 42 0 0 chr11 95107992 95108016 -55675537 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2356 95 10 0 chr11 95108498 95108802 -55674751 - AluSp SINE Alu -6 307 1 22 0 0 0 chr11 95109093 95109115 -55674438 + AT_rich Low_complexity Low_complexity 1 22 0 521 269 56 6 chr11 95109494 95109654 -55673899 + MIR SINE MIR 20 187 -75 791 247 8 79 chr11 95109709 95109976 -55673577 - MIR SINE MIR 0 262 15 26 30 0 0 chr11 95110776 95110809 -55672744 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr11 95113610 95113639 -55669914 + AT_rich Low_complexity Low_complexity 1 29 0 1427 217 7 36 chr11 95114055 95114364 -55669189 - AluJo SINE Alu -12 300 1 299 119 0 17 chr11 95115123 95115182 -55668371 + (TC)n Simple_repeat Simple_repeat 2 59 0 708 283 118 92 chr11 95116611 95117099 -55666454 + MLT1L LTR MaLR 5 446 -65 314 107 13 120 chr11 95117107 95117182 -55666371 - Ricksha DNA DNA -2340 906 840 2663 167 35 57 chr11 95117188 95117734 -55665819 - MLT2B3 LTR ERVL -20 534 1 659 119 6 0 chr11 95117981 95117998 -55665555 - L1M4 LINE L1 -535 5639 5624 2901 127 39 11 chr11 95117998 95118462 -55665091 - L1PB3 LINE L1 -2 6152 5676 659 119 6 0 chr11 95118462 95118552 -55665001 - L1M4 LINE L1 -550 5624 5528 1613 177 3 41 chr11 95118553 95118847 -55664706 - AluJb SINE Alu -29 283 1 362 236 113 10 chr11 95120496 95120626 -55662927 - MIR SINE MIR -67 141 43 2084 277 101 16 chr11 95120722 95121367 -55662186 + L1MEc LINE L1 40 790 -5606 2188 62 58 24 chr11 95121367 95121658 -55661895 + AluY SINE Alu 1 301 -10 2084 277 101 16 chr11 95121658 95121947 -55661606 + L1MEc LINE L1 790 1053 -5343 940 238 75 30 chr11 95121956 95122317 -55661236 + L1MEc LINE L1 1824 2200 -4196 4181 243 146 57 chr11 95122341 95122404 -55661149 + L1MEc LINE L1 2905 2961 -3254 1716 168 0 14 chr11 95122404 95122690 -55660863 + AluSx SINE Alu 1 282 -30 4181 243 146 57 chr11 95122690 95123222 -55660331 + L1MEc LINE L1 2961 3444 -2771 1859 179 36 33 chr11 95123222 95123409 -55660144 + MSTD LTR MaLR 5 190 -206 2345 84 0 13 chr11 95123409 95123708 -55659845 + AluY SINE Alu 2 296 -15 1859 179 36 33 chr11 95123708 95123911 -55659642 + MSTD LTR MaLR 190 396 0 4181 243 146 57 chr11 95123911 95124737 -55658816 + L1MEc LINE L1 3444 4195 -2020 207 0 0 0 chr11 95124737 95124760 -55658793 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2013 122 4 0 chr11 95124763 95125042 -55658511 - AluY SINE Alu -26 285 6 4181 243 146 57 chr11 95125042 95125071 -55658482 + L1MEc LINE L1 4196 4221 -1994 1545 153 39 39 chr11 95125071 95125353 -55658200 - AluJb SINE Alu -24 288 7 4181 243 146 57 chr11 95125353 95126151 -55657402 + L1MEc LINE L1 4221 5362 -853 2031 250 35 95 chr11 95126152 95126860 -55656693 + L1ME1 LINE L1 3 668 -6191 * 2375 196 53 66 chr11 95126849 95127932 -55655621 + L1ME1 LINE L1 1106 2169 -4790 1790 235 57 33 chr11 95127926 95128475 -55655078 + L1ME1 LINE L1 6091 6652 -325 * 508 241 99 147 chr11 95128523 95128742 -55654811 - L1ME3A LINE L1 -99 6065 5837 2271 118 0 6 chr11 95128742 95129055 -55654498 - AluSx SINE Alu -1 311 1 508 241 99 147 chr11 95129055 95129371 -55654182 - L1ME3A LINE L1 -327 5837 5556 444 227 17 17 chr11 95129512 95129631 -55653922 - L1ME LINE L1 -5946 124 6 43038 31 21 1 chr11 95129667 95135697 -55647856 - L1HS LINE L1 -2 6153 1 624 314 95 21 chr11 95136294 95136378 -55647175 + L2 LINE L2 3001 3077 -236 2128 105 18 0 chr11 95136378 95136678 -55646875 - AluSg SINE Alu 0 305 1 624 314 95 21 chr11 95136678 95136875 -55646678 + L2 LINE L2 3077 3304 -9 400 303 137 11 chr11 95137669 95137844 -55645709 + MIR SINE MIR 63 259 -3 1168 162 0 29 chr11 95138035 95138239 -55645314 + MER1B DNA MER1_type 1 198 -99 533 121 24 0 chr11 95138238 95138321 -55645232 + MER1B DNA MER1_type 255 339 0 * 1595 260 74 29 chr11 95138488 95139042 -55644511 - MLT1G LTR MaLR -2 588 10 803 174 0 0 chr11 95139337 95139475 -55644078 + Ricksha_c DNA DNA 4 141 -1905 10325 131 50 7 chr11 95139479 95141195 -55642358 + Ricksha_c DNA DNA 250 2039 -7 212 259 87 108 chr11 95141839 95142024 -55641529 + L2 LINE L2 2731 2911 -403 320 292 62 0 chr11 95142225 95142321 -55641232 + L2 LINE L2 3193 3294 -19 2122 119 0 25 chr11 95144168 95144488 -55639065 + AluSx SINE Alu 1 312 0 241 250 125 0 chr11 95146733 95146829 -55636724 - MIR SINE MIR -81 127 20 230 128 43 0 chr11 95147210 95147257 -55636296 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 374 264 27 18 chr11 95147410 95147522 -55636031 + MIR SINE MIR 103 214 -48 246 62 0 0 chr11 95147888 95147920 -55635633 + (T)n Simple_repeat Simple_repeat 1 32 0 27 0 0 0 chr11 95147926 95147953 -55635600 + GC_rich Low_complexity Low_complexity 1 27 0 996 138 6 6 chr11 95148202 95148361 -55635192 + L1PA6 LINE L1 5982 6140 -14 6037 263 19 22 chr11 95148366 95150316 -55633237 + L1P LINE L1 1866 3809 -2337 1293 148 10 0 chr11 95150320 95150523 -55633030 + L1PA16 LINE L1 5958 6162 -4 1188 241 36 86 chr11 95150524 95150609 -55632944 - L1MC5 LINE L1 -902 7059 6971 288 0 0 0 chr11 95150609 95150641 -55632912 + (TG)n Simple_repeat Simple_repeat 1 32 0 1188 241 36 86 chr11 95150641 95150690 -55632863 - L1MC5 LINE L1 -990 6971 6921 1798 85 142 11 chr11 95150690 95150950 -55632603 - AluSc SINE Alu -15 294 1 1188 241 36 86 chr11 95150950 95151282 -55632271 - L1MC5 LINE L1 -1040 6921 6615 21 36 0 0 chr11 95151353 95151381 -55632172 + AT_rich Low_complexity Low_complexity 1 28 0 15330 143 24 10 chr11 95151482 95153867 -55629686 + Tigger1 DNA MER2_type 1 2417 -1 25 31 0 0 chr11 95153897 95153929 -55629624 + AT_rich Low_complexity Low_complexity 1 32 0 3310 199 22 9 chr11 95153966 95154605 -55628948 - MER82 DNA MER2_type 0 653 7 614 236 64 59 chr11 95154643 95154863 -55628690 - L1MC5 LINE L1 -1872 5936 5716 1033 185 74 29 chr11 95154895 95155138 -55628415 - L1MC5 LINE L1 -2224 5584 5331 2301 217 50 2 chr11 95155320 95155776 -55627777 + MLT2B2 LTR ERVL 1 478 -37 343 311 7 34 chr11 95156272 95156420 -55627133 - MIR SINE MIR -89 173 30 249 232 73 37 chr11 95159027 95159109 -55624444 + MIR SINE MIR 3 87 -175 2180 95 7 17 chr11 95159394 95159690 -55623863 - AluSc SINE Alu -14 295 3 250 343 58 22 chr11 95159750 95159887 -55623666 + MIR SINE MIR 46 187 -75 241 282 183 35 chr11 95159903 95160045 -55623508 - MER5B DNA MER1_type 0 178 16 276 318 49 7 chr11 95160164 95160310 -55623243 + MIR SINE MIR 9 158 -50 468 250 9 19 chr11 95160375 95160483 -55623070 - MIR SINE MIR -135 127 21 960 273 114 35 chr11 95160500 95160653 -55622900 - L2 LINE L2 -1 3312 3172 2092 96 7 10 chr11 95160653 95160945 -55622608 + AluSx SINE Alu 17 307 -5 960 273 114 35 chr11 95160945 95161359 -55622194 - L2 LINE L2 -141 3172 2676 1740 147 16 41 chr11 95161359 95161678 -55621875 + L1MB1 LINE L1 5858 6168 0 960 273 114 35 chr11 95161678 95161814 -55621739 - L2 LINE L2 -637 2676 2552 180 239 75 45 chr11 95161911 95161978 -55621575 - L2 LINE L2 -182 3090 3022 538 292 82 43 chr11 95162778 95162921 -55620632 + MIR SINE MIR 2 159 -103 2707 130 48 7 chr11 95162921 95163336 -55620217 - MSTB1 LTR MaLR 0 432 1 538 292 82 43 chr11 95163336 95163425 -55620128 + MIR SINE MIR 159 243 -19 966 240 125 29 chr11 95163739 95164123 -55619430 - LTR52 LTR ERVL 0 421 1 263 252 54 27 chr11 95164419 95164530 -55619023 - L2 LINE L2 -1 3271 3158 324 298 153 43 chr11 95164615 95164870 -55618683 - L2 LINE L2 -731 2583 2301 191 320 66 41 chr11 95165627 95165749 -55617804 + MIR SINE MIR 26 150 -112 308 243 131 9 chr11 95166111 95166218 -55617335 + MIR SINE MIR 25 144 -118 1585 176 129 26 chr11 95166224 95166627 -55616926 - MER69 DNA AcHobo 0 2526 2067 2256 110 3 0 chr11 95166627 95166927 -55616626 - AluSq SINE Alu -9 304 4 1585 176 129 26 chr11 95166927 95166989 -55616564 - MER69 DNA AcHobo -459 2067 2013 916 175 96 21 chr11 95167108 95167348 -55616205 - MER69 DNA AcHobo -691 1835 1578 215 197 13 105 chr11 95168225 95168301 -55615252 + L2 LINE L2 3025 3093 -179 225 65 0 0 chr11 95169070 95169101 -55614452 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 393 359 31 0 chr11 95169365 95169524 -55614029 + L2 LINE L2 2562 2725 -589 * 950 313 86 12 chr11 95169515 95169934 -55613619 + L2 LINE L2 2864 3313 0 1114 189 42 14 chr11 95170202 95170414 -55613139 - MER20 DNA MER1_type -1 218 1 1619 213 31 68 chr11 95170849 95171177 -55612376 + L1MA4A LINE L1 4529 4868 -1278 11377 170 27 5 chr11 95171177 95173880 -55609673 + L1PA13 LINE L1 3420 6159 -4 1619 213 31 68 chr11 95173880 95174445 -55609108 + L1MA4A LINE L1 4868 5372 -774 2484 79 0 3 chr11 95174447 95174752 -55608801 + AluY SINE Alu 2 305 -6 5426 127 38 28 chr11 95174974 95175911 -55607642 + L1MA4A LINE L1 5352 6298 -5 315 239 0 0 chr11 95176540 95176607 -55606946 + MER81 DNA DNA 2 68 -46 520 380 39 39 chr11 95176841 95177149 -55606404 + L2 LINE L2 2961 3268 -4 223 387 75 0 chr11 95177402 95177508 -55606045 - L2 LINE L2 0 3272 3159 2289 48 0 11 chr11 95177608 95177879 -55605674 + AluY SINE Alu 30 297 -14 183 345 58 52 chr11 95178195 95178369 -55605184 - L2 LINE L2 -425 2889 2715 284 340 26 39 chr11 95179257 95179413 -55604140 + L2 LINE L2 2931 3084 -188 295 258 108 0 chr11 95179857 95179950 -55603603 + L2 LINE L2 3168 3270 -2 434 207 11 0 chr11 95180422 95180509 -55603044 + L1MB1 LINE L1 6075 6162 -6 354 288 8 25 chr11 95180629 95180747 -55602806 - MIR3 SINE MIR -89 119 4 394 271 101 8 chr11 95181889 95182018 -55601535 - MIR SINE MIR -42 220 80 195 286 76 19 chr11 95182022 95182127 -55601426 + L2 LINE L2 3197 3307 -6 198 158 26 0 chr11 95182333 95182371 -55601182 + MIR SINE MIR 116 154 -108 833 243 110 7 chr11 95182806 95183098 -55600455 + MER5C DNA MER1_type 3 324 0 386 266 35 18 chr11 95183436 95183549 -55600004 - MIR SINE MIR -128 134 20 1418 155 16 93 chr11 95183707 95184030 -55599523 + MLT1B LTR MaLR 1 298 -92 330 322 40 7 chr11 95184908 95185060 -55598493 - MER5B DNA MER1_type -16 162 6 270 0 0 0 chr11 95185092 95185122 -55598431 + (CA)n Simple_repeat Simple_repeat 2 31 0 297 345 76 0 chr11 95185125 95185244 -55598309 - L2 LINE L2 -9 3263 3136 1211 152 24 19 chr11 95185361 95185571 -55597982 + MER20 DNA MER1_type 6 216 -3 4123 43 0 0 chr11 95185983 95186448 -55597105 - L1PA5 LINE L1 -8 6146 5682 187 238 12 62 chr11 95186518 95186598 -55596955 - MIR SINE MIR -73 135 60 265 360 86 11 chr11 95186937 95187112 -55596441 - MLT1H LTR MaLR -182 367 180 199 316 53 13 chr11 95187243 95187319 -55596234 - MIR3 SINE MIR -124 84 6 198 0 0 0 chr11 95187410 95187432 -55596121 + (T)n Simple_repeat Simple_repeat 1 22 0 1852 155 3 26 chr11 95187548 95187857 -55595696 - AluJb SINE Alu 0 312 11 426 297 104 52 chr11 95188391 95188645 -55594908 - MLT1J LTR MaLR -37 474 236 605 178 0 0 chr11 95188709 95188799 -55594754 + LTR18A LTR ERVL 1 90 -267 1535 129 95 4 chr11 95188977 95189218 -55594335 + LTR18A LTR ERVL 95 357 0 17280 162 13 12 chr11 95189232 95189962 -55593591 + HERVL18 LTR ERVL 9 737 -5310 192 79 158 0 chr11 95189962 95190000 -55593553 - L3b LINE CR1 -258 1325 1282 17280 162 13 12 chr11 95190000 95192288 -55591265 + HERVL18 LTR ERVL 737 3065 -2982 1210 223 20 0 chr11 95192288 95192535 -55591018 - MER21B LTR ERV1 -593 270 19 317 178 93 112 chr11 95192533 95192640 -55590913 - MER21B LTR ERV1 -757 106 2 * 290 313 83 10 chr11 95192946 95193042 -55590511 - MER91A DNA MER1_type 0 196 94 517 318 53 0 chr11 95193042 95193212 -55590341 - MER91A DNA MER1_type -17 179 1 311 328 92 11 chr11 95193399 95193670 -55589883 - L2 LINE L2 -1108 2206 1914 678 288 42 78 chr11 95194144 95194502 -55589051 - MLT1K LTR MaLR -55 533 189 212 356 117 27 chr11 95194597 95194819 -55588734 + L2 LINE L2 2843 3084 -188 * 286 229 102 34 chr11 95194809 95194927 -55588626 + MIR SINE MIR 126 251 -11 279 310 0 44 chr11 95194967 95195080 -55588473 - MER94 DNA DNA -25 109 2 282 343 46 9 chr11 95195619 95195727 -55587826 + L2 LINE L2 3158 3269 -3 314 222 42 14 chr11 95196307 95196379 -55587174 - LTR33A LTR ERVL -4 519 446 342 242 21 21 chr11 95196648 95196743 -55586810 - MLT2E LTR ERVL -496 132 38 197 327 0 0 chr11 95196817 95196872 -55586681 - L2 LINE L2 -1 3312 3258 184 311 16 16 chr11 95196912 95196973 -55586580 + L2 LINE L2 3180 3240 -32 325 244 47 0 chr11 95197363 95197449 -55586104 - L1ME LINE L1 -303 5818 5729 403 260 89 27 chr11 95197703 95197849 -55585704 + MIR3 SINE MIR 42 196 -12 242 264 42 28 chr11 95198241 95198313 -55585240 + L2 LINE L2 3192 3264 -8 541 252 46 32 chr11 95198799 95198992 -55584561 - MIR SINE MIR -65 197 10 361 280 57 38 chr11 95199042 95199199 -55584354 - MIR SINE MIR -34 228 69 499 274 15 76 chr11 95199612 95199731 -55583822 + L2 LINE L2 2603 2708 -606 2180 96 0 0 chr11 95199731 95200038 -55583515 + AluSx SINE Alu 10 316 0 499 274 15 76 chr11 95200038 95200114 -55583439 + L2 LINE L2 2708 2787 -527 438 315 84 84 chr11 95200146 95200552 -55583001 + L2 LINE L2 2862 3267 -5 253 264 144 48 chr11 95201849 95201974 -55581579 - MIR SINE MIR -110 152 16 184 338 15 15 chr11 95202406 95202474 -55581079 + MER5A DNA MER1_type 15 82 -107 655 174 5 121 chr11 95202668 95202858 -55580695 + MER58C DNA MER1_type 44 211 -4 287 221 162 66 chr11 95202950 95203086 -55580467 + MER103 DNA DNA 18 166 0 234 329 118 26 chr11 95203486 95203638 -55579915 + MIR3 SINE MIR 42 207 -1 1915 121 17 22 chr11 95204443 95204790 -55578763 - MER4A LTR ERV1 0 664 261 614 162 0 10 chr11 95204790 95204889 -55578664 - MER4A LTR ERV1 -566 98 1 236 375 62 37 chr11 95204944 95205187 -55578366 - L2 LINE L2 -187 3085 2837 321 26 0 0 chr11 95205342 95205380 -55578173 + (CA)n Simple_repeat Simple_repeat 2 39 0 2383 163 8 3 chr11 95205554 95205915 -55577638 + MLT1A1 LTR MaLR 1 363 -2 266 333 113 41 chr11 95206349 95206836 -55576717 - L2 LINE L2 -13 3259 2719 3187 184 173 17 chr11 95206836 95207671 -55575882 - LTR28 LTR ERV1 0 1020 4 1482 144 6 113 chr11 95207759 95208200 -55575353 - Tigger5 DNA MER2_type 0 2323 33 205 346 75 9 chr11 95209367 95209474 -55574079 - L2 LINE L2 0 3272 3159 286 248 88 80 chr11 95210844 95210981 -55572572 - L1MC5 LINE L1 -71 7890 7753 447 19 0 0 chr11 95211090 95211142 -55572411 + (CA)n Simple_repeat Simple_repeat 1 52 0 939 221 34 43 chr11 95211143 95211465 -55572088 - L1MC5 LINE L1 -385 7576 7258 1563 194 39 94 chr11 95211502 95211830 -55571723 - MLT1B LTR MaLR 0 390 88 1421 231 134 23 chr11 95211830 95212181 -55571372 + MSTD LTR MaLR 5 394 -2 1563 194 39 94 chr11 95212181 95212265 -55571288 - MLT1B LTR MaLR -302 88 1 427 270 101 6 chr11 95212273 95212432 -55571121 - L1MC5 LINE L1 -755 7206 7033 * 14987 149 14 57 chr11 95212423 95212699 -55570854 + L1PA15-16 LINE L1 1 287 -6562 1810 151 144 56 chr11 95212699 95212916 -55570637 - MSTA LTR MaLR 0 428 231 1968 143 0 7 chr11 95212916 95213224 -55570329 - AluSx SINE Alu 0 306 1 1810 151 144 56 chr11 95213224 95213394 -55570159 - MSTA LTR MaLR -197 231 5 14987 149 14 57 chr11 95213394 95215814 -55567739 + L1PA15-16 LINE L1 287 2582 -4267 11077 145 12 19 chr11 95215821 95217654 -55565899 + L1P LINE L1 11 1830 -4316 4501 52 11 0 chr11 95217651 95218567 -55564986 + L1PA6 LINE L1 4904 5826 -328 * 2457 84 0 3 chr11 95218570 95218879 -55564674 + AluY SINE Alu 1 308 -3 212 264 0 0 chr11 95220333 95220386 -55563167 + (TATG)n Simple_repeat Simple_repeat 4 56 0 191 200 0 0 chr11 95220608 95220643 -55562910 + L2 LINE L2 3236 3270 -2 640 291 75 18 chr11 95220727 95221005 -55562548 + L1ME LINE L1 5523 5816 -354 982 260 4 18 chr11 95221304 95221320 -55562233 - AluSx SINE Alu 0 312 297 1204 260 3 0 chr11 95221320 95221632 -55561921 - AluSq SINE Alu 0 313 1 982 260 4 18 chr11 95221632 95221888 -55561665 - AluSx SINE Alu -15 297 44 297 323 53 8 chr11 95222573 95222706 -55560847 - MIR3 SINE MIR -6 202 64 11781 40 9 0 chr11 95273061 95273276 -55510277 + L1P LINE L1 2481 2692 -3454 180 0 0 0 chr11 95273276 95273296 -55510257 + (CACAC)n Simple_repeat Simple_repeat 3 22 0 11781 40 9 0 chr11 95273296 95274553 -55509000 + L1P LINE L1 2692 3967 -2179 8255 94 3 5 chr11 95274653 95275779 -55507774 + HERV9 LTR ERV1 1959 3081 -5318 232 340 160 31 chr11 95276133 95276327 -55507226 - L2 LINE L2 -461 2853 2635 538 282 50 11 chr11 95276350 95276531 -55507022 - LTR16A1 LTR ERVL 0 457 270 416 93 47 12 chr11 95277343 95277429 -55506124 - L1MA10 LINE L1 -2 6332 6244 275 71 24 0 chr11 95277430 95277472 -55506081 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 322 314 7 13 chr11 95277474 95277627 -55505926 - L1M4 LINE L1 -1955 4191 4040 378 249 104 2 chr11 95277737 95277932 -55505621 - L1M4 LINE L1 -2302 3844 3634 257 259 25 0 chr11 95278197 95278278 -55505275 - L1MCa LINE L1 -6263 163 81 201 162 0 0 chr11 95278281 95278318 -55505235 + T-rich Low_complexity Low_complexity 4 40 0 209 296 167 9 chr11 95279316 95279424 -55504129 + MIR3 SINE MIR 83 207 -1 1749 211 129 28 chr11 95279771 95280416 -55503137 + L1ME1 LINE L1 1695 2404 -3992 2118 228 37 6 chr11 95280436 95281390 -55502163 + L1ME1 LINE L1 4849 5996 -239 1326 67 0 6 chr11 95281402 95281566 -55501987 + AluY SINE Alu 1 163 -148 266 365 102 10 chr11 95282038 95282235 -55501318 + MIR SINE MIR 3 217 -45 259 326 32 11 chr11 95282317 95282412 -55501141 + MIR SINE MIR 158 254 -8 364 247 11 67 chr11 95282438 95282548 -55501005 + MIR SINE MIR 15 119 -89 204 40 0 0 chr11 95282766 95282791 -55500762 + (TG)n Simple_repeat Simple_repeat 2 26 0 317 315 61 15 chr11 95282977 95283174 -55500379 - L1MC/D LINE L1 -1997 5811 5606 1104 200 60 0 chr11 95283179 95283394 -55500159 + AluJb SINE Alu 1 228 -84 233 229 0 0 chr11 95283611 95283659 -55499894 - MLT2B1 LTR ERVL -472 48 1 232 90 150 0 chr11 95283862 95283914 -55499639 - L1MA5 LINE L1 0 6300 6242 9533 55 10 0 chr11 95283915 95285892 -55497661 - L1PA5 LINE L1 -3 6151 4165 3376 30 0 0 chr11 95285996 95286393 -55497160 - L1P LINE L1 -1668 4478 4082 182 252 93 108 chr11 95286563 95286960 -55496593 + L2 LINE L2 1270 1660 -1654 853 311 32 4 chr11 95286991 95287239 -55496314 - MIR SINE MIR -6 256 2 262 332 206 26 chr11 95287288 95287794 -55495759 + L2 LINE L2 1700 2296 -1018 209 262 48 24 chr11 95287940 95288024 -55495529 + MIR3 SINE MIR 75 160 -48 797 234 26 46 chr11 95288087 95288319 -55495234 + MIR SINE MIR 33 261 -1 1733 66 5 0 chr11 95288417 95288629 -55494924 + AluY SINE Alu 82 294 -17 283 355 92 13 chr11 95288913 95289065 -55494488 + L2 LINE L2 2753 2916 -398 198 184 0 0 chr11 95289083 95289121 -55494432 - L2 LINE L2 -2 3311 3274 1849 144 14 7 chr11 95289805 95290097 -55493456 - AluSx SINE Alu -18 294 1 3395 274 82 15 chr11 95290099 95291583 -55491970 - L1MEc LINE L1 -4758 1638 55 366 261 102 38 chr11 95291669 95291826 -55491727 + MIR3 SINE MIR 12 178 -30 243 125 0 0 chr11 95291836 95291876 -55491677 + (TA)n Simple_repeat Simple_repeat 2 41 0 542 212 27 103 chr11 95292167 95292220 -55491333 - MIR SINE MIR -124 138 83 2298 92 3 10 chr11 95292220 95292524 -55491029 + AluSp SINE Alu 1 302 -11 542 212 27 103 chr11 95292524 95292616 -55490937 - MIR SINE MIR -179 83 4 1808 115 31 71 chr11 95292898 95293221 -55490332 - AluSg SINE Alu 0 310 1 491 284 47 26 chr11 95293526 95293716 -55489837 + MIR SINE MIR 3 196 -66 202 245 151 0 chr11 95294221 95294274 -55489279 + MIR SINE MIR 52 112 -150 1514 140 5 0 chr11 95294807 95295021 -55488532 - AluSg/x SINE Alu -19 291 77 433 344 145 27 chr11 95295128 95295843 -55487710 + L2 LINE L2 2469 3259 -13 219 336 39 39 chr11 95295855 95295959 -55487594 + L2 LINE L2 2981 3084 -188 299 264 32 97 chr11 95296011 95296166 -55487387 - MIR SINE MIR 0 262 118 292 372 11 0 chr11 95296171 95296265 -55487288 - L2 LINE L2 -44 3228 3134 638 321 23 10 chr11 95296291 95296531 -55487022 - MIR SINE MIR -2 260 18 195 289 178 37 chr11 95296555 95296690 -55486863 - L2 LINE L2 -177 3095 2942 2699 122 27 15 chr11 95296697 95297288 -55486265 - MER4E LTR ERV1 -1 765 1 214 195 0 0 chr11 95297355 95297396 -55486157 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 216 0 0 0 chr11 95298123 95298147 -55485406 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 236 67 0 44 chr11 95298157 95298202 -55485351 - L1PA2 LINE L1 0 6155 6113 642 12 0 0 chr11 95298202 95298282 -55485271 + L1PA4 LINE L1 5890 5969 -186 198 0 0 0 chr11 95298499 95298521 -55485032 + (T)n Simple_repeat Simple_repeat 1 22 0 207 259 0 49 chr11 95298714 95298795 -55484758 + GA-rich Low_complexity Low_complexity 3 79 0 368 257 59 15 chr11 95299108 95299244 -55484309 - MLT1L LTR MaLR -8 607 466 290 267 33 81 chr11 95299263 95299473 -55484080 - MLT1J LTR MaLR -202 309 110 335 362 31 12 chr11 95299576 95299739 -55483814 - MIR SINE MIR -77 185 20 225 180 0 0 chr11 95300321 95300371 -55483182 + A-rich Low_complexity Low_complexity 1 50 0 553 301 19 0 chr11 95301297 95301453 -55482100 - MER5A DNA MER1_type 0 189 31 342 0 0 0 chr11 95302165 95302203 -55481350 + (GA)n Simple_repeat Simple_repeat 2 39 0 797 118 0 0 chr11 95302286 95302396 -55481157 - THE1C LTR MaLR -265 110 1 366 246 49 41 chr11 95303288 95303410 -55480143 + MIR SINE MIR 32 154 -108 1775 194 0 0 chr11 95303520 95303804 -55479749 + AluJo SINE Alu 1 284 -28 338 236 47 9 chr11 95304305 95304411 -55479142 + MLT1G LTR MaLR 481 590 0 477 261 172 0 chr11 95304422 95304556 -55478997 + MER5A DNA MER1_type 32 188 -1 357 274 196 0 chr11 95304912 95305065 -55478488 - MIR SINE MIR -79 183 1 1152 228 111 78 chr11 95305066 95305078 -55478475 - MLT1G LTR MaLR 0 590 580 2154 123 36 38 chr11 95305078 95305443 -55478110 + THE1B LTR MaLR 1 364 0 1152 228 111 78 chr11 95305443 95305960 -55477593 - MLT1G LTR MaLR -10 580 7 189 0 0 0 chr11 95307863 95307884 -55475669 + (T)n Simple_repeat Simple_repeat 1 21 0 221 281 0 0 chr11 95308176 95308240 -55475313 + (CATCC)n Simple_repeat Simple_repeat 1 64 0 558 298 34 34 chr11 95308695 95308957 -55474596 - MIR SINE MIR 0 262 1 186 302 16 0 chr11 95309121 95309184 -55474369 + L2 LINE L2 2916 2979 -293 2725 222 78 18 chr11 95309214 95310058 -55473495 - L1ME2 LINE L1 -16 6148 5254 1908 118 20 10 chr11 95310795 95311091 -55472462 + THE1B LTR MaLR 66 364 0 9912 107 45 36 chr11 95311091 95312657 -55470896 + THE1B-int LTR MaLR 1 1580 0 2451 127 6 3 chr11 95312657 95313020 -55470533 + THE1B LTR MaLR 1 364 0 231 250 0 0 chr11 95313116 95313164 -55470389 + CT-rich Low_complexity Low_complexity 1 48 0 5603 251 72 39 chr11 95313721 95316696 -55466857 - L1ME2 LINE L1 -890 5256 2183 1098 199 32 83 chr11 95316834 95317111 -55466442 + AluJb SINE Alu 11 273 -39 310 367 113 34 chr11 95317188 95317365 -55466188 + L2 LINE L2 3082 3272 0 232 228 0 35 chr11 95317407 95317464 -55466089 + (TATG)n Simple_repeat Simple_repeat 3 57 0 1899 183 71 9 chr11 95317624 95318062 -55465491 + L1MA7 LINE L1 5576 6040 -251 1282 269 126 26 chr11 95318818 95319451 -55464102 + LTR68 LTR ERV1 1 697 -43 1746 186 68 32 chr11 95319451 95319892 -55463661 - LTR2B LTR ERV1 0 490 34 307 128 0 0 chr11 95319913 95319960 -55463593 + LTR68 LTR ERV1 694 740 0 3253 58 0 9 chr11 95320050 95320495 -55463058 - LTR7 LTR ERV1 -9 441 1 1233 122 10 0 chr11 95322550 95322747 -55460806 + MSTA LTR MaLR 1 199 -229 12386 114 6 33 chr11 95322748 95325570 -55457983 + L1PA7 LINE L1 1 2810 -3651 4048 90 23 0 chr11 95325570 95326121 -55457432 + L1PA7 LINE L1 5902 6469 0 1298 170 17 0 chr11 95326123 95326358 -55457195 + MSTA LTR MaLR 190 428 0 287 264 54 16 chr11 95326452 95326581 -55456972 - L1MC/D LINE L1 -1946 5862 5729 1540 184 40 0 chr11 95326721 95326993 -55456560 + AluJo SINE Alu 1 283 -29 714 263 101 22 chr11 95327016 95327381 -55456172 + L1ME4a LINE L1 5493 5886 -235 782 148 14 0 chr11 95327441 95327583 -55455970 - L1PA16 LINE L1 -135 6031 5888 9586 68 7 16 chr11 95327583 95329686 -55453867 - L1PA6 LINE L1 0 6154 4066 25432 108 23 12 chr11 95329686 95333753 -55449800 - L1PA6 LINE L1 -2024 4122 11 1856 167 30 7 chr11 95334097 95334472 -55449081 - AluSx SINE Alu 0 382 1 274 257 14 14 chr11 95335112 95335182 -55448371 + CT-rich Low_complexity Low_complexity 1 70 0 274 56 0 0 chr11 95335394 95335430 -55448123 - Alu SINE Alu -254 46 11 246 95 0 0 chr11 95335464 95335506 -55448047 + (TC)n Simple_repeat Simple_repeat 2 43 0 423 38 0 0 chr11 95335506 95335559 -55447994 + (CA)n Simple_repeat Simple_repeat 1 53 0 348 159 0 0 chr11 95336366 95336435 -55447118 - L1MA5 LINE L1 0 6300 6232 21 0 0 0 chr11 95336813 95336834 -55446719 + AT_rich Low_complexity Low_complexity 1 21 0 2830 228 14 21 chr11 95337307 95338069 -55445484 - L1ME1 LINE L1 -4 6162 5406 243 190 0 0 chr11 95338318 95338376 -55445177 + CT-rich Low_complexity Low_complexity 2 59 0 206 361 39 15 chr11 95339083 95339213 -55444340 + MIR SINE MIR 20 152 -56 326 323 156 32 chr11 95339669 95339855 -55443698 + L2 LINE L2 2997 3205 -67 250 388 30 0 chr11 95340866 95341000 -55442553 + L3 LINE CR1 1386 1523 -54 1085 200 43 0 chr11 95341099 95341309 -55442244 - MER20 DNA MER1_type 0 219 1 825 261 16 41 chr11 95341607 95341852 -55441701 + MIR SINE MIR 14 252 -10 387 247 58 7 chr11 95341863 95342017 -55441536 - MER104 DNA Tc2 -18 162 1 417 313 123 20 chr11 95342051 95342246 -55441307 + MIR SINE MIR 48 262 0 364 278 203 6 chr11 95342551 95342740 -55440813 - MIR SINE MIR -6 256 32 222 311 122 0 chr11 95342948 95343038 -55440515 - L2 LINE L2 -306 2966 2866 342 309 32 0 chr11 95343040 95343134 -55440419 + L2 LINE L2 3154 3250 -22 185 273 0 0 chr11 95343504 95343548 -55440005 - MIR SINE MIR -167 95 52 342 384 29 12 chr11 95344044 95344216 -55439337 - MIR3 SINE MIR -19 189 15 454 235 35 17 chr11 95344217 95344332 -55439221 + MER5A DNA MER1_type 13 129 -60 188 339 79 8 chr11 95344536 95344663 -55438890 - L2 LINE L2 -1017 2297 2162 1645 127 12 12 chr11 95345464 95345716 -55437837 + AluY SINE Alu 30 281 -30 2372 129 94 82 chr11 95346074 95346096 -55437457 + LTR49 LTR ERV1 2 22 -573 1450 209 91 123 chr11 95346096 95346847 -55436706 + LTR8A LTR ERV1 1 727 0 2372 129 94 82 chr11 95346847 95347228 -55436325 + LTR49 LTR ERV1 22 417 -178 3344 167 36 27 chr11 95347228 95347893 -55435660 - LTR51 LTR ERV1 0 671 1 2372 129 94 82 chr11 95347893 95348075 -55435478 + LTR49 LTR ERV1 417 595 0 258 269 45 0 chr11 95348084 95348151 -55435402 - MIR SINE MIR -65 197 128 2438 212 60 8 chr11 95349161 95349695 -55433858 + MER21B LTR ERV1 1 562 -301 2338 111 11 0 chr11 95349695 95350054 -55433499 + MER41B LTR ERV1 1 363 -272 520 82 0 24 chr11 95350054 95350139 -55433414 + MLT2A2 LTR ERVL 1 83 -370 6558 200 75 24 chr11 95350139 95351726 -55431827 - MER52A LTR ERV1 0 1755 4 1170 209 59 33 chr11 95351726 95352160 -55431393 + MLT2A2 LTR ERVL 86 552 -2 1381 164 52 17 chr11 95352169 95352456 -55431097 + MER41B LTR ERV1 339 635 0 1007 193 57 64 chr11 95352456 95352736 -55430817 + MER21A LTR ERV1 638 915 -16 2354 185 26 11 chr11 95352880 95353334 -55430219 + LTR24 LTR ERV1 7 467 0 2954 176 43 26 chr11 95353843 95354451 -55429102 + LTR29 LTR ERV1 5 622 0 2311 180 18 9 chr11 95354453 95354909 -55428644 + LTR29-int LTR ERV1 1 460 -5871 814 204 50 28 chr11 95354941 95355122 -55428431 + LTR29-int LTR ERV1 442 626 -5705 * 2400 185 46 59 chr11 95355120 95355778 -55427775 + LTR29-int LTR ERV1 751 1399 -4932 1537 177 52 45 chr11 95355886 95356165 -55427388 + LTR29-int LTR ERV1 1372 1648 -4683 315 0 0 0 chr11 95356165 95356200 -55427353 + (CA)n Simple_repeat Simple_repeat 2 36 0 1537 177 52 45 chr11 95356200 95356393 -55427160 + LTR29-int LTR ERV1 1648 1926 -4405 1127 192 10 5 chr11 95356409 95356602 -55426951 + AluJ SINE Alu 9 202 -110 410 39 0 0 chr11 95356616 95356667 -55426886 + MSTB2 LTR MaLR 407 457 0 453 206 0 0 chr11 95356680 95356753 -55426800 + AluJ SINE Alu 210 282 -30 216 0 0 0 chr11 95356756 95356780 -55426773 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4305 217 59 30 chr11 95356782 95358318 -55425235 + LTR29-int LTR ERV1 1959 3618 -2713 612 262 4 32 chr11 95358394 95358747 -55424806 + MSTD LTR MaLR 1 428 0 235 299 117 0 chr11 95359006 95359083 -55424470 + MIR SINE MIR 66 151 -57 28 0 0 0 chr11 95361508 95361536 -55422017 + AT_rich Low_complexity Low_complexity 1 28 0 188 236 146 0 chr11 95362823 95362878 -55420675 + L3b LINE CR1 1307 1369 -214 520 253 59 1 chr11 95362924 95363197 -55420356 + MER69 DNA AcHobo 325 628 -598 * 1213 204 45 38 chr11 95363186 95363582 -55419971 + MER69 DNA AcHobo 2122 2520 -6 953 128 7 0 chr11 95363780 95363929 -55419624 - L1MA3 LINE L1 -2 6303 6154 459 151 244 8 chr11 95363957 95364076 -55419477 - MER4C LTR ERV1 -19 446 300 1138 171 132 29 chr11 95364138 95364448 -55419105 - MER4A LTR ERV1 -322 342 1 3910 117 20 25 chr11 95364448 95364467 -55419086 - L1MA3 LINE L1 -148 6157 6139 1849 157 35 35 chr11 95364467 95364842 -55418711 - THE1C LTR MaLR 0 375 1 10202 128 33 5 chr11 95364844 95366380 -55417173 - THE1C-int LTR MaLR -2 1578 1 1908 129 40 30 chr11 95366380 95366751 -55416802 - THE1C LTR MaLR 0 375 1 3910 117 20 25 chr11 95366751 95366926 -55416627 - L1MA3 LINE L1 -166 6139 5965 2303 165 57 0 chr11 95366926 95367331 -55416222 - MSTA LTR MaLR 0 428 1 3910 117 20 25 chr11 95367331 95367816 -55415737 - L1MA3 LINE L1 -340 5965 5476 213 184 122 0 chr11 95368711 95368760 -55414793 + L2 LINE L2 3216 3270 -2 280 336 55 0 chr11 95368912 95369022 -55414531 - MIR SINE MIR -74 188 73 187 269 30 15 chr11 95369162 95369229 -55414324 + L2 LINE L2 3152 3219 -94 508 339 68 25 chr11 95370950 95371390 -55412163 + L1MDa LINE L1 169 1562 -719 438 244 8 31 chr11 95371736 95371863 -55411690 + MER94 DNA DNA 6 129 -5 1955 108 0 0 chr11 95371867 95372125 -55411428 + AluSx SINE Alu 6 263 -49 7289 156 22 2 chr11 95372311 95374605 -55408948 - L1PA13 LINE L1 -3 6160 3819 216 0 0 0 chr11 95375181 95375205 -55408348 + (CAT)n Simple_repeat Simple_repeat 2 25 0 437 322 49 29 chr11 95376361 95376606 -55406947 - MIR SINE MIR -12 250 1 208 313 25 12 chr11 95376653 95376733 -55406820 + L2 LINE L2 2126 2206 -1108 1708 204 139 18 chr11 95377865 95378354 -55405199 - LTR10A LTR ERV1 -61 548 1 298 391 42 14 chr11 95378650 95378865 -55404688 + L2 LINE L2 2825 3045 -227 319 219 16 0 chr11 95380104 95380168 -55403385 - L2 LINE L2 0 3313 3249 763 163 13 31 chr11 95380320 95380501 -55403052 + MER4E LTR ERV1 1 285 -587 * 1218 201 65 54 chr11 95380498 95380580 -55402973 + MER4D LTR ERV1 547 627 -276 1982 98 24 35 chr11 95380580 95380938 -55402615 + AluSp SINE Alu 1 355 0 1218 201 65 54 chr11 95380938 95381207 -55402346 + MER4D LTR ERV1 627 903 0 1142 204 60 23 chr11 95381368 95381720 -55401833 - LTR37A LTR ERV1 -61 365 1 5287 128 4 8 chr11 95381826 95382606 -55400947 - LTR17 LTR ERV1 0 780 4 274 301 60 55 chr11 95383274 95383366 -55400187 - MIR SINE MIR -9 253 163 1782 140 189 16 chr11 95383366 95383731 -55399822 - MSTA LTR MaLR 0 428 1 274 301 60 55 chr11 95383731 95383821 -55399732 - MIR SINE MIR -99 163 70 180 260 52 52 chr11 95384123 95384200 -55399353 - L3 LINE CR1 -1422 155 79 636 164 8 23 chr11 95384646 95384774 -55398779 + FLAM_C SINE Alu 1 126 -17 260 340 45 16 chr11 95385432 95385570 -55397983 + MIR3 SINE MIR 32 168 -50 1728 152 80 37 chr11 95385617 95385966 -55397587 + THE1B LTR MaLR 1 364 0 1385 254 26 90 chr11 95387536 95388102 -55395451 - L1MEc LINE L1 -5759 637 113 1936 94 0 85 chr11 95388102 95388421 -55395132 - AluY SINE Alu -19 292 1 1385 254 26 90 chr11 95388421 95388477 -55395076 - L1MEc LINE L1 -6283 113 55 569 297 39 39 chr11 95388891 95389120 -55394433 - L2 LINE L2 -2 3311 3083 8915 173 25 32 chr11 95389120 95391843 -55391710 + L1PB1 LINE L1 3063 5792 -359 318 26 0 0 chr11 95391843 95391882 -55391671 + (CA)n Simple_repeat Simple_repeat 1 39 0 8915 173 25 32 chr11 95391882 95392239 -55391314 + L1PB1 LINE L1 5792 6150 -1 1891 178 0 3 chr11 95392280 95392589 -55390964 + AluJo SINE Alu 1 308 -4 214 236 18 18 chr11 95392829 95392884 -55390669 + MIR SINE MIR 193 247 -15 1541 189 32 4 chr11 95392953 95393234 -55390319 - AluJo SINE Alu -23 289 1 293 378 111 0 chr11 95393690 95393825 -55389728 - L2 LINE L2 -22 3250 3101 243 343 0 0 chr11 95394295 95394365 -55389188 - L2 LINE L2 -4 3268 3199 572 305 39 13 chr11 95396710 95396864 -55386689 + MIR SINE MIR 8 165 -97 185 350 124 21 chr11 95397111 95397305 -55386248 + L2 LINE L2 2841 3054 -259 394 179 26 0 chr11 95397510 95397588 -55385965 - MLT1J LTR MaLR -316 195 116 250 237 51 0 chr11 95398286 95398345 -55385208 + L2 LINE L2 3248 3309 -4 949 206 98 0 chr11 95399267 95399418 -55384135 - AluJo SINE Alu -25 287 113 285 51 0 0 chr11 95399418 95399457 -55384096 + (TTTTA)n Simple_repeat Simple_repeat 5 43 0 949 206 98 0 chr11 95399457 95399489 -55384064 - AluJo SINE Alu -199 113 86 756 285 25 1 chr11 95399674 95399939 -55383614 - LTR40c LTR ERVL -38 424 158 1892 171 3 13 chr11 95399939 95400249 -55383304 - AluJo SINE Alu -4 308 2 198 0 0 0 chr11 95400253 95400275 -55383278 + (T)n Simple_repeat Simple_repeat 1 22 0 262 264 11 23 chr11 95400386 95400473 -55383080 - LTR40c LTR ERVL -374 91 6 305 311 134 24 chr11 95400482 95400646 -55382907 - MIR3 SINE MIR -24 184 3 587 299 113 0 chr11 95400880 95401101 -55382452 + MIR SINE MIR 1 246 -16 632 244 81 12 chr11 95401885 95402057 -55381496 - MER63A DNA MER1_type -24 186 3 199 271 21 0 chr11 95402806 95402854 -55380699 - MIR SINE MIR -68 140 92 309 297 125 13 chr11 95403014 95403246 -55380307 - MIR SINE MIR 0 262 5 30 69 0 0 chr11 95403309 95403367 -55380186 + AT_rich Low_complexity Low_complexity 1 58 0 624 263 59 16 chr11 95403644 95403830 -55379723 + MIR SINE MIR 9 202 -60 3380 156 21 13 chr11 95403888 95404759 -55378794 - L1MA6 LINE L1 -423 5877 4999 2505 88 3 0 chr11 95404759 95405067 -55378486 + AluSc SINE Alu 1 309 0 3380 156 21 13 chr11 95405067 95405190 -55378363 - L1MA6 LINE L1 -1301 4999 4879 2267 165 12 9 chr11 95405190 95405612 -55377941 + L1MA6 LINE L1 5865 6295 -5 355 276 220 14 chr11 95405945 95406159 -55377394 + MIR SINE MIR 5 262 0 269 146 0 73 chr11 95406567 95406622 -55376931 - L2 LINE L2 0 3313 3263 666 272 43 57 chr11 95406670 95407155 -55376398 + MER39 LTR ERV1 1 639 -68 5977 158 23 29 chr11 95407156 95408311 -55375242 - L1PB1 LINE L1 -1 6150 5011 2086 120 3 17 chr11 95408311 95408610 -55374943 - AluSx SINE Alu -17 295 1 5977 158 23 29 chr11 95408610 95409709 -55373844 - L1PB1 LINE L1 -1140 5011 3906 242 258 79 11 chr11 95409716 95409805 -55373748 + MER34C LTR ERV1 489 583 -2 355 341 48 18 chr11 95410702 95410931 -55372622 - L2 LINE L2 -345 2969 2734 23990 140 19 25 chr11 95411011 95417384 -55366169 + L1PA8A LINE L1 1 6440 -6 319 216 284 10 chr11 95417395 95417497 -55366056 - MER94 DNA DNA 0 134 5 577 277 121 0 chr11 95417552 95417758 -55365795 + MIR SINE MIR 32 262 0 394 348 72 8 chr11 95417900 95418136 -55365417 - MIR SINE MIR 0 262 12 302 298 10 10 chr11 95418748 95418852 -55364701 + MIR SINE MIR 33 136 -72 1730 194 182 0 chr11 95419130 95419547 -55364006 + MLT1D LTR MaLR 13 505 0 28 0 0 0 chr11 95419670 95419698 -55363855 + AT_rich Low_complexity Low_complexity 1 28 0 454 280 113 20 chr11 95419738 95419888 -55363665 - MIR SINE MIR -58 204 41 196 217 50 17 chr11 95419887 95419947 -55363606 + MIR SINE MIR 201 262 0 * 180 0 0 0 chr11 95420583 95420603 -55362950 + (A)n Simple_repeat Simple_repeat 1 20 0 198 227 27 67 chr11 95421003 95421078 -55362475 + L2 LINE L2 3242 3313 0 238 261 130 0 chr11 95421306 95421375 -55362178 - MIR SINE MIR -127 135 58 214 300 20 15 chr11 95421466 95421547 -55362006 - MIR SINE MIR -85 123 45 1366 118 73 0 chr11 95421833 95422037 -55361516 - AluSg/x SINE Alu -16 296 78 413 230 43 65 chr11 95422107 95422246 -55361307 - MIR SINE MIR -43 219 84 1147 190 47 5 chr11 95422553 95422849 -55360704 - MLT1B LTR MaLR -11 379 11 626 250 37 114 chr11 95423713 95423850 -55359703 + MLT1J1 LTR MaLR 6 152 -298 718 164 30 90 chr11 95423850 95424051 -55359502 - MER53 DNA DNA 0 189 1 626 250 37 114 chr11 95424051 95424402 -55359151 + MLT1J1 LTR MaLR 152 450 0 280 293 57 19 chr11 95424422 95424528 -55359025 - MIR SINE MIR -59 203 94 26 0 0 0 chr11 95424685 95424711 -55358842 + AT_rich Low_complexity Low_complexity 1 26 0 201 39 0 0 chr11 95424823 95424849 -55358704 + (TG)n Simple_repeat Simple_repeat 2 27 0 219 36 0 0 chr11 95424880 95424908 -55358645 + (CA)n Simple_repeat Simple_repeat 2 29 0 1629 213 45 19 chr11 95424939 95425385 -55358168 - MER89 LTR ERV1 0 559 3 385 220 27 16 chr11 95425426 95425548 -55358005 - L1MD2 LINE L1 -28 6140 6016 207 69 0 0 chr11 95425991 95426020 -55357533 + (CCAA)n Simple_repeat Simple_repeat 3 31 0 2598 267 53 39 chr11 95426115 95429069 -55354484 + L1MA9 LINE L1 29 2940 -3094 600 155 39 0 chr11 95429069 95429172 -55354381 + U6 snRNA snRNA 1 107 0 5399 119 12 41 chr11 95429173 95429918 -55353635 + L1MA2 LINE L1 5405 6119 -185 1998 133 7 0 chr11 95429918 95430203 -55353350 + AluSx SINE Alu 2 288 -24 5399 119 12 41 chr11 95430203 95430384 -55353169 + L1MA2 LINE L1 6119 6304 0 2598 267 53 39 chr11 95430384 95430822 -55352731 + L1MA9 LINE L1 2452 2882 -3152 * 6793 165 38 53 chr11 95430804 95432441 -55351112 + L1MA9 LINE L1 3614 5275 -925 1892 109 26 0 chr11 95432441 95432708 -55350845 + AluSq SINE Alu 1 274 -39 414 0 0 0 chr11 95432715 95432761 -55350792 + (TAA)n Simple_repeat Simple_repeat 3 48 0 6793 165 38 53 chr11 95432761 95433707 -55349846 + L1MA9 LINE L1 5281 6197 -3 209 194 15 90 chr11 95433936 95434003 -55349550 + L2 LINE L2 3040 3101 -171 268 289 219 25 chr11 95434061 95434262 -55349291 + MIR SINE MIR 20 259 -3 215 302 119 16 chr11 95434265 95434391 -55349162 + L2 LINE L2 3128 3266 -6 2276 159 0 12 chr11 95434525 95434949 -55348604 + MLT2D LTR ERVL 8 397 0 228 79 132 0 chr11 95434949 95434987 -55348566 - MIR SINE MIR -103 159 117 1456 157 234 11 chr11 95435280 95435630 -55347923 + MSTA LTR MaLR 1 428 0 1182 225 29 3 chr11 95435634 95435941 -55347612 + MER66A LTR ERV1 118 432 -46 492 246 145 29 chr11 95436179 95436386 -55347167 + L2 LINE L2 3080 3310 -3 389 336 70 19 chr11 95436491 95436705 -55346848 + L2 LINE L2 2853 3077 -195 619 283 127 0 chr11 95437033 95437238 -55346315 - MIR SINE MIR 0 262 32 335 294 120 0 chr11 95437343 95437435 -55346118 - L2 LINE L2 -4 3268 3166 338 220 241 7 chr11 95437459 95437600 -55345953 - MER5B DNA MER1_type -2 176 3 384 237 13 112 chr11 95437630 95437782 -55345771 + MER5B DNA MER1_type 24 160 -18 332 269 6 109 chr11 95437632 95437807 -55345746 - MER5A DNA MER1_type -25 164 8 * 280 242 15 15 chr11 95438083 95438149 -55345404 + MER5A DNA MER1_type 122 187 -2 260 260 26 26 chr11 95438247 95438324 -55345229 - MIR SINE MIR -90 172 96 344 335 42 18 chr11 95438439 95438606 -55344947 - MIR3 SINE MIR -1 207 37 180 259 0 0 chr11 95439888 95439942 -55343611 + GA-rich Low_complexity Low_complexity 2 55 0 39721 43 22 6 chr11 95440438 95446486 -55337067 - L1PA3 LINE L1 -2 6153 3 196 179 0 0 chr11 95446521 95446560 -55336993 - L2 LINE L2 -8 3305 3267 * 278 317 120 29 chr11 95446558 95446766 -55336787 - L2 LINE L2 -663 2651 2425 186 43 0 0 chr11 95446904 95446927 -55336626 + (TA)n Simple_repeat Simple_repeat 2 24 0 510 292 220 21 chr11 95447275 95447706 -55335847 - LTR33 LTR ERVL 0 521 5 366 253 181 6 chr11 95448069 95448235 -55335318 + MIR SINE MIR 68 262 0 2004 50 0 0 chr11 95448640 95448930 -55334623 - L1P LINE L1 -728 5427 5138 * 5866 21 0 25 chr11 95448929 95449681 -55333872 + L1PA3 LINE L1 5443 6176 0 1020 225 71 56 chr11 95449764 95450173 -55333380 - MER96B DNA MER1_type 0 417 3 443 246 120 36 chr11 95450193 95450360 -55333193 - MIR SINE MIR -14 248 68 228 233 0 0 chr11 95451350 95451393 -55332160 + L2 LINE L2 3271 3313 0 444 135 0 0 chr11 95451483 95451557 -55331996 + (TA)n Simple_repeat Simple_repeat 2 75 0 8812 24 0 0 chr11 95452133 95453941 -55329612 - L1PA3 LINE L1 -3 6152 4345 1674 289 116 26 chr11 95454765 95455767 -55327786 - L2 LINE L2 -4 3309 2198 263 335 69 69 chr11 95456143 95456331 -55327222 + MIR SINE MIR 20 207 -55 289 324 152 16 chr11 95458208 95458395 -55325158 - MIR SINE MIR -7 255 42 1770 209 85 30 chr11 95458717 95459209 -55324344 + LTR40a LTR ERVL 1 519 0 326 328 84 23 chr11 95459827 95459958 -55323595 - MIR3 SINE MIR -64 144 6 229 393 55 21 chr11 95460385 95460530 -55323023 - L2 LINE L2 -14 3258 3109 1399 185 106 0 chr11 95460861 95461126 -55322427 - AluJo SINE Alu -18 294 2 235 336 88 18 chr11 95461289 95461402 -55322151 - MIR SINE MIR -62 146 26 409 291 10 0 chr11 95461570 95461673 -55321880 - MER5A DNA MER1_type -74 115 12 217 261 50 76 chr11 95462473 95462592 -55320961 - MIR3 SINE MIR -3 205 90 392 317 120 6 chr11 95462690 95462857 -55320696 - MIR SINE MIR -20 242 57 325 276 96 49 chr11 95463597 95463906 -55319647 + L1MEc LINE L1 1303 1485 -4938 970 255 31 54 chr11 95463986 95464503 -55319050 + L1M4 LINE L1 3081 3585 -2561 395 247 157 0 chr11 95464517 95464683 -55318870 + L1M4 LINE L1 3921 4112 -2034 8723 197 43 34 chr11 95464698 95467183 -55316370 - L1MA4 LINE L1 -52 6248 3788 200 59 29 0 chr11 95467183 95467217 -55316336 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 8723 197 43 34 chr11 95467217 95467397 -55316156 - L1MA4 LINE L1 -2512 3788 3611 808 243 0 0 chr11 95467397 95467574 -55315979 - FRAM SINE Alu 0 176 1 8723 197 43 34 chr11 95467574 95468132 -55315421 - L1MA4 LINE L1 -2689 3611 2941 201 213 0 0 chr11 95468133 95468180 -55315373 + C-rich Low_complexity Low_complexity 1 47 0 202 316 0 18 chr11 95468434 95468491 -55315062 + L3b LINE CR1 1528 1583 0 22 0 0 0 chr11 95468554 95468576 -55314977 + AT_rich Low_complexity Low_complexity 1 22 0 277 373 49 0 chr11 95469498 95469600 -55313953 + L2 LINE L2 3201 3307 -6 264 333 67 20 chr11 95470301 95470451 -55313102 + L1MEd LINE L1 250 406 -5713 299 300 88 53 chr11 95470540 95470823 -55312730 + L1MEd LINE L1 538 830 -5289 470 270 24 8 chr11 95471426 95471552 -55312001 - MIR3 SINE MIR -50 158 31 898 29 0 0 chr11 95472068 95472172 -55311381 - L1PA5 LINE L1 -9 6145 6042 346 326 169 31 chr11 95472535 95472860 -55310693 + L2 LINE L2 2556 2925 -389 35 0 0 0 chr11 95474902 95474937 -55308616 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr11 95475417 95475438 -55308115 + (CAA)n Simple_repeat Simple_repeat 1 21 0 269 306 51 31 chr11 95475519 95475617 -55307936 + L2 LINE L2 3173 3272 0 300 227 102 11 chr11 95475664 95475752 -55307801 + MIR3 SINE MIR 111 206 -2 5370 209 38 10 chr11 95476000 95476733 -55306820 + L1 LINE L1 3215 4003 -2143 1553 84 4 25 chr11 95476733 95476970 -55306583 + L1PA6 LINE L1 5923 6154 0 5370 209 38 10 chr11 95476970 95477569 -55305984 + L1 LINE L1 4003 4584 -1562 451 304 157 11 chr11 95477669 95477949 -55305604 + MLT1J2 LTR MaLR 87 407 -43 806 285 9 0 chr11 95479759 95479980 -55303573 - MER58A DNA MER1_type -1 223 1 186 43 0 0 chr11 95480058 95480081 -55303472 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 237 360 68 24 chr11 95481469 95481790 -55301763 + L2 LINE L2 2728 3057 -215 888 127 19 13 chr11 95482977 95483135 -55300418 + L1MB4 LINE L1 6021 6179 -1 192 138 0 0 chr11 95483568 95483597 -55299956 + MIR SINE MIR 154 182 -80 323 214 168 8 chr11 95483759 95483890 -55299663 - L1ME4a LINE L1 -26 6095 5944 283 275 47 61 chr11 95484853 95484932 -55298621 + MIR SINE MIR 74 153 -109 1711 118 65 0 chr11 95484932 95485223 -55298330 + AluSg SINE Alu 3 310 0 283 275 47 61 chr11 95485223 95485273 -55298280 + MIR SINE MIR 153 202 -60 213 65 0 0 chr11 95486517 95486548 -55297005 + (A)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr11 95486961 95486982 -55296571 + AT_rich Low_complexity Low_complexity 1 21 0 334 246 75 36 chr11 95487354 95487597 -55295956 + L1MC5 LINE L1 6992 7242 -733 248 272 124 74 chr11 95487728 95488107 -55295446 + L1MC5 LINE L1 7272 7669 -292 22 56 0 0 chr11 95488940 95488976 -55294577 + AT_rich Low_complexity Low_complexity 1 36 0 211 156 22 44 chr11 95489181 95489226 -55294327 - L2 LINE L2 0 3272 3229 252 226 137 39 chr11 95489429 95489531 -55294022 + MIR SINE MIR 81 192 -70 409 329 60 64 chr11 95489558 95490014 -55293539 + L2 LINE L2 2654 3119 -194 880 281 23 16 chr11 95490092 95490348 -55293205 - MIR SINE MIR -3 259 2 370 217 14 0 chr11 95490428 95490497 -55293056 + L2 LINE L2 3199 3268 -4 207 185 0 62 chr11 95490714 95490779 -55292774 - MER5C DNA MER1_type -35 289 229 437 202 71 38 chr11 95491223 95491406 -55292147 + MER113 DNA MER1_type? 43 231 -290 321 314 79 7 chr11 95491582 95491722 -55291831 - MIR SINE MIR -66 196 47 576 219 43 194 chr11 95492529 95492808 -55290745 + MIR SINE MIR 16 252 -10 352 281 94 8 chr11 95493282 95493410 -55290143 - MIR SINE MIR -16 246 108 183 211 0 39 chr11 95494279 95494331 -55289222 + L2 LINE L2 2988 3037 -235 596 283 87 11 chr11 95494351 95494616 -55288937 + L1MEc LINE L1 77 361 -6035 2001 260 142 44 chr11 95494699 95495807 -55287746 + L1MEc LINE L1 847 2062 -4334 307 256 83 98 chr11 95496273 95496527 -55287026 - L1M4 LINE L1 -2177 4205 3956 495 313 50 26 chr11 95496574 95496951 -55286602 - L1M4 LINE L1 -2509 3873 3488 685 272 117 28 chr11 95497108 95497682 -55285871 - L1M4 LINE L1 -2887 3495 2871 306 200 53 21 chr11 95498002 95498097 -55285456 + MIR SINE MIR 160 257 -5 390 262 75 0 chr11 95498701 95498808 -55284745 - MIR SINE MIR -66 196 82 391 261 51 7 chr11 95499645 95499682 -55283871 - L1MA10 LINE L1 -13 6321 6285 1557 248 50 21 chr11 95499682 95500259 -55283294 - L1ME1 LINE L1 -44 6122 5529 488 282 80 21 chr11 95500827 95501015 -55282538 + MIR SINE MIR 14 212 -50 22 0 0 0 chr11 95501816 95501838 -55281715 + AT_rich Low_complexity Low_complexity 1 22 0 2131 133 7 0 chr11 95501866 95502159 -55281394 - AluSx SINE Alu -17 295 1 1447 91 9 5 chr11 95502326 95502547 -55281006 - L1P LINE L1 -1488 4658 4437 2524 56 21 62 chr11 95502547 95502916 -55280637 + L1PA7 LINE L1 5786 6143 -11 22 0 0 0 chr11 95502920 95502942 -55280611 + AT_rich Low_complexity Low_complexity 1 22 0 21 26 0 26 chr11 95502965 95502988 -55280565 + AT_rich Low_complexity Low_complexity 1 24 -14 2499 68 0 0 chr11 95502988 95503297 -55280256 + AluY SINE Alu 1 309 -2 21 26 0 26 chr11 95503297 95503312 -55280241 + AT_rich Low_complexity Low_complexity 24 38 0 22 0 0 0 chr11 95503706 95503728 -55279825 + AT_rich Low_complexity Low_complexity 1 22 0 295 274 0 24 chr11 95504220 95504304 -55279249 + MIR SINE MIR 141 222 -40 230 301 70 133 chr11 95504627 95504883 -55278670 - L2 LINE L2 -87 3185 2946 393 379 35 0 chr11 95505084 95505229 -55278324 - L2 LINE L2 0 3272 3123 717 214 21 26 chr11 95505397 95505639 -55277914 - L1M4 LINE L1 -4114 2268 2025 314 124 25 74 chr11 95506091 95506212 -55277341 + GA-rich Low_complexity Low_complexity 2 116 0 1456 196 108 33 chr11 95506721 95507119 -55276434 + MSTC LTR MaLR 1 428 0 739 315 103 56 chr11 95508049 95508567 -55274986 - L2 LINE L2 -13 3259 2712 895 250 48 4 chr11 95509141 95509369 -55274184 + MIR SINE MIR 10 247 -15 242 324 140 22 chr11 95509604 95509783 -55273770 - MIR SINE MIR -4 258 59 308 326 128 43 chr11 95509901 95510042 -55273511 - MIR SINE MIR -72 136 32 229 333 8 49 chr11 95512990 95513113 -55270440 + L2 LINE L2 2543 2660 -654 1489 185 0 28 chr11 95513382 95513668 -55269885 - AluJo SINE Alu 0 312 35 1585 106 4 4 chr11 95514046 95514291 -55269262 - L1P LINE L1 -1172 4974 4730 259 292 0 0 chr11 95514990 95515055 -55268498 + CT-rich Low_complexity Low_complexity 2 66 0 261 322 99 0 chr11 95515065 95515186 -55268367 - L2 LINE L2 -1 3312 3180 21 0 0 0 chr11 95515630 95515651 -55267902 + AT_rich Low_complexity Low_complexity 1 21 0 263 174 70 70 chr11 95515890 95515976 -55267577 + L1ME2 LINE L1 2 87 -6032 328 266 44 0 chr11 95516003 95516116 -55267437 - L1MA8 LINE L1 -1 6290 6173 1329 192 0 4 chr11 95516165 95516394 -55267159 + AluJb SINE Alu 85 312 0 461 226 91 57 chr11 95516492 95516722 -55266831 + L1ME2 LINE L1 773 1010 -5109 1515 145 4 39 chr11 95516822 95517077 -55266476 - AluSg SINE Alu -64 246 1 371 241 112 0 chr11 95517081 95517197 -55266356 + MIR SINE MIR 124 252 -10 330 297 46 51 chr11 95517502 95517697 -55265856 + MIR3 SINE MIR 6 199 -9 339 187 66 33 chr11 95517763 95517854 -55265699 + MIR SINE MIR 57 150 -112 215 152 22 0 chr11 95519188 95519234 -55264319 + C-rich Low_complexity Low_complexity 3 49 0 1794 170 10 3 chr11 95519234 95519522 -55264031 - AluJb SINE Alu -14 298 9 4013 203 27 11 chr11 95519530 95521292 -55262261 - L1 LINE L1 -3199 3649 1860 592 158 0 70 chr11 95521294 95521408 -55262145 - U6 snRNA snRNA 0 107 2 1098 268 54 16 chr11 95521409 95522770 -55260783 + L1ME2 LINE L1 4069 5530 -615 2178 118 67 14 chr11 95522771 95523117 -55260436 - THE1B LTR MaLR 0 364 1 11661 98 9 1 chr11 95523117 95524684 -55258869 - THE1B-int LTR MaLR 0 1580 1 1875 127 49 32 chr11 95524692 95525038 -55258515 - THE1B LTR MaLR -12 352 1 772 184 7 138 chr11 95525038 95525320 -55258233 + L1ME2 LINE L1 5527 5771 -376 41370 45 1 2 chr11 95525364 95531522 -55252031 - L1PA3 LINE L1 -1 6154 4 751 285 75 6 chr11 95531523 95531884 -55251669 + L1ME2 LINE L1 5762 6147 0 1053 288 149 17 chr11 95532367 95533020 -55250533 - L2 LINE L2 0 3313 2575 800 181 122 11 chr11 95533864 95534052 -55249501 - MER63A DNA MER1_type -1 209 1 748 286 13 9 chr11 95535376 95535600 -55247953 - MIR SINE MIR -25 237 13 279 261 0 0 chr11 95535771 95535840 -55247713 + (TTTA)n Simple_repeat Simple_repeat 3 71 0 286 302 62 16 chr11 95535841 95535970 -55247583 - MIR SINE MIR -7 255 121 1904 153 64 0 chr11 95537085 95537412 -55246141 + MER7A DNA MER2_type 1 346 0 2162 134 0 0 chr11 95537726 95538025 -55245528 + AluSg SINE Alu 1 299 -11 2387 154 31 17 chr11 95538212 95538634 -55244919 - MSTA LTR MaLR 0 428 1 746 304 102 59 chr11 95539237 95539754 -55243799 - L2 LINE L2 0 3313 2783 245 292 0 0 chr11 95539854 95539919 -55243634 + L2 LINE L2 3206 3270 -2 1007 174 32 5 chr11 95540725 95540943 -55242610 - MER67C LTR ERV1 0 710 487 722 230 35 15 chr11 95540948 95541148 -55242405 - MER67C LTR ERV1 -348 362 159 267 336 104 0 chr11 95541542 95541667 -55241886 + MIR SINE MIR 19 156 -106 690 219 55 18 chr11 95543200 95543419 -55240134 - L1MA9 LINE L1 -40 6272 6046 221 287 37 79 chr11 95543636 95543800 -55239753 - MIR SINE MIR -56 206 50 195 184 61 0 chr11 95543882 95543931 -55239622 - L3 LINE CR1 -3 1574 1523 2095 56 0 0 chr11 95544111 95544398 -55239155 - AluY SINE Alu 0 319 33 239 206 0 32 chr11 95545306 95545369 -55238184 + (CAGAGA)n Simple_repeat Simple_repeat 3 63 0 6527 82 0 10 chr11 95545841 95546809 -55236744 - L1PA10 LINE L1 -2 6166 5200 198 0 0 0 chr11 95546834 95546856 -55236697 + (T)n Simple_repeat Simple_repeat 1 22 0 225 0 0 0 chr11 95547107 95547132 -55236421 + (T)n Simple_repeat Simple_repeat 1 25 0 550 310 120 12 chr11 95547671 95548071 -55235482 + L1ME3A LINE L1 5495 5937 -233 2178 54 0 0 chr11 95548156 95548417 -55235136 - AluY SINE Alu -4 307 47 1917 263 138 81 chr11 95548550 95550438 -55233115 - HAL1 LINE L1 -14 2493 498 844 208 6 0 chr11 95550649 95550808 -55232745 + MIR SINE MIR 93 252 -10 197 256 0 0 chr11 95550936 95550979 -55232574 + L2 LINE L2 3256 3298 -15 207 0 0 0 chr11 95554746 95554769 -55228784 + (TGGA)n Simple_repeat Simple_repeat 1 23 0 199 273 196 41 chr11 95554777 95554997 -55228556 - L2 LINE L2 -660 2654 2401 1457 208 116 24 chr11 95555186 95555420 -55228133 - MLT1C LTR MaLR 0 467 256 1812 208 6 3 chr11 95555420 95555785 -55227768 - MER47A DNA MER2_type 0 366 1 1457 208 116 24 chr11 95555785 95555973 -55227580 - MLT1C LTR MaLR -211 256 6 243 269 336 7 chr11 95555987 95556136 -55227417 + L3 LINE CR1 469 666 -911 205 294 29 0 chr11 95556158 95556226 -55227327 + MIR SINE MIR 35 104 -104 296 262 154 89 chr11 95556272 95556596 -55226957 + L1MEd LINE L1 63 407 -5712 407 311 40 44 chr11 95556797 95557048 -55226505 + L1MEd LINE L1 547 796 -5323 393 228 7 60 chr11 95557084 95557233 -55226320 - HAL1 LINE L1 -1187 1320 1180 45 45 0 0 chr11 95557237 95557303 -55226250 + AT_rich Low_complexity Low_complexity 1 66 0 22 0 0 0 chr11 95557546 95557568 -55225985 + AT_rich Low_complexity Low_complexity 1 22 0 2147 141 7 0 chr11 95557596 95557901 -55225652 - AluSx SINE Alu -5 307 1 4294 188 8 13 chr11 95557972 95558107 -55225446 - L1 LINE L1 -1679 5886 5752 427 122 81 0 chr11 95558107 95558181 -55225372 - MADE1 DNA Mariner 0 80 1 4294 188 8 13 chr11 95558181 95558918 -55224635 - L1 LINE L1 -1813 5752 5018 288 0 0 0 chr11 95558918 95558950 -55224603 + (T)n Simple_repeat Simple_repeat 1 32 0 288 0 0 0 chr11 95559117 95559149 -55224404 + (T)n Simple_repeat Simple_repeat 1 32 0 5929 194 21 32 chr11 95559149 95560611 -55222942 - L1 LINE L1 -2542 5023 3579 2381 115 29 8 chr11 95560625 95561007 -55222546 - L1 LINE L1 -3911 3654 3265 1430 107 15 0 chr11 95561007 95561204 -55222349 - AluY SINE Alu -12 299 100 10339 144 31 5 chr11 95561204 95562929 -55220624 - L1 LINE L1 -4292 3273 1504 3773 168 19 118 chr11 95562922 95563785 -55219768 + L1M1 LINE L1 804 1580 -5985 * 413 168 0 0 chr11 95563785 95563851 -55219702 + L1M1 LINE L1 1139 1508 -6057 242 157 0 59 chr11 95564890 95564941 -55218612 + L2 LINE L2 3266 3313 0 575 227 169 0 chr11 95565055 95565209 -55218344 + MER5A DNA MER1_type 10 189 0 896 229 112 28 chr11 95565536 95565859 -55217694 + MER67C LTR ERV1 40 389 -321 714 207 48 24 chr11 95565856 95566064 -55217489 + MER67C LTR ERV1 498 710 0 * 3936 130 27 8 chr11 95566327 95566951 -55216602 - MER39B LTR ERV1 0 622 1 265 348 71 83 chr11 95567194 95567447 -55216106 - L2 LINE L2 -14 3258 3009 547 279 148 57 chr11 95567467 95567764 -55215789 + L2 LINE L2 2949 3272 0 1354 260 105 17 chr11 95569072 95569740 -55213813 + L1M4 LINE L1 3912 4632 -1514 231 325 0 0 chr11 95569763 95569840 -55213713 + L1ME2 LINE L1 6075 6151 -13 1014 266 12 0 chr11 95569904 95570148 -55213405 + L1MC4 LINE L1 6660 6906 -1136 333 0 0 0 chr11 95570150 95570187 -55213366 + (CA)n Simple_repeat Simple_repeat 2 38 0 424 219 25 17 chr11 95570190 95570309 -55213244 + L1MC4 LINE L1 7923 8042 0 233 327 52 45 chr11 95572223 95572553 -55211000 - L1ME LINE L1 -240 5881 5550 590 279 65 28 chr11 95572965 95573180 -55210373 + MIR SINE MIR 8 230 -32 33 0 0 0 chr11 95573791 95573824 -55209729 + AT_rich Low_complexity Low_complexity 1 33 0 301 342 84 44 chr11 95574163 95574388 -55209165 - L2 LINE L2 -54 3218 2985 662 181 83 21 chr11 95575045 95575189 -55208364 - MER20 DNA MER1_type -1 218 66 374 264 112 24 chr11 95575394 95575519 -55208034 - L2 LINE L2 0 3272 3137 537 121 0 0 chr11 95575717 95575800 -55207753 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 2181 96 0 0 chr11 95575817 95576099 -55207454 - AluSx SINE Alu -30 282 1 262 260 50 60 chr11 95577616 95577716 -55205837 - L2 LINE L2 -16 3297 3199 307 327 134 40 chr11 95578019 95578221 -55205332 - MIR SINE MIR -10 252 32 216 276 79 51 chr11 95579016 95579193 -55204360 + MIR SINE MIR 16 218 -44 191 300 0 0 chr11 95581660 95581700 -55201853 + MIR SINE MIR 34 73 -135 611 265 72 11 chr11 95581817 95581998 -55201555 + MIR SINE MIR 7 198 -64 646 207 14 111 chr11 95582001 95582209 -55201344 + MLT1G LTR MaLR 1 188 -402 333 242 10 40 chr11 95582210 95582309 -55201244 + L1MDb LINE L1 1039 1134 -5275 832 176 72 16 chr11 95582310 95582353 -55201200 + L1MA9 LINE L1 6109 6148 -164 342 0 0 0 chr11 95582353 95582391 -55201162 + (CA)n Simple_repeat Simple_repeat 1 38 0 832 176 72 16 chr11 95582391 95582540 -55201013 + L1MA9 LINE L1 6148 6312 0 4228 209 77 14 chr11 95582544 95583718 -55199835 + L1MDb LINE L1 1125 2372 -4034 707 183 176 40 chr11 95583715 95584014 -55199539 + L1MD2 LINE L1 5911 6242 0 * 27 29 0 0 chr11 95584133 95584167 -55199386 + AT_rich Low_complexity Low_complexity 1 34 0 8768 176 55 17 chr11 95584292 95587039 -55196514 - L1PA15 LINE L1 -1 6164 3362 365 307 65 0 chr11 95587397 95587550 -55196003 - MLT1K LTR MaLR -14 574 412 183 321 127 30 chr11 95588011 95588176 -55195377 + MIR SINE MIR 32 212 -50 359 244 156 31 chr11 95588437 95588597 -55194956 - MIR SINE MIR -49 213 34 223 175 16 16 chr11 95590292 95590355 -55193198 + CT-rich Low_complexity Low_complexity 3 65 0 987 106 0 0 chr11 95590382 95590514 -55193039 + AluY SINE Alu 1 132 -179 189 0 0 0 chr11 95590514 95590535 -55193018 + (A)n Simple_repeat Simple_repeat 1 21 0 1081 79 0 85 chr11 95590681 95590896 -55192657 + AluY SINE Alu 119 318 0 344 288 141 16 chr11 95592570 95592754 -55190799 - MIR SINE MIR -11 251 45 268 277 0 0 chr11 95592988 95593053 -55190500 - MIR SINE MIR -10 252 188 213 289 39 29 chr11 95593347 95593451 -55190102 - L2 LINE L2 -493 2821 2717 227 281 114 35 chr11 95595060 95595174 -55188379 - L2 LINE L2 -6 3307 3185 1818 120 55 21 chr11 95595267 95595593 -55187960 + MER44D DNA MER2_type 3 609 0 350 405 42 16 chr11 95595895 95596401 -55187152 - L2 LINE L2 -400 2914 2396 218 336 125 8 chr11 95596526 95596654 -55186899 + MIR SINE MIR 6 148 -114 776 272 106 57 chr11 95597324 95597806 -55185747 - MLT1J LTR MaLR 0 450 1 867 251 101 8 chr11 95597972 95598564 -55184989 - L1ME2 LINE L1 -14 6150 5451 264 276 95 52 chr11 95598815 95598931 -55184622 + MIR SINE MIR 125 245 -17 198 191 0 0 chr11 95598985 95599027 -55184526 + (CAT)n Simple_repeat Simple_repeat 1 42 0 360 375 22 0 chr11 95599517 95599653 -55183900 - MIR SINE MIR -119 143 5 307 362 31 8 chr11 95599884 95600011 -55183542 + MIR3 SINE MIR 27 156 -52 1014 144 40 80 chr11 95600011 95600079 -55183474 + L1MA8 LINE L1 6048 6117 -174 1792 151 7 27 chr11 95600079 95600377 -55183176 - AluSx SINE Alu -20 292 1 1014 144 40 80 chr11 95600377 95600558 -55182995 + L1MA8 LINE L1 6117 6287 -4 322 264 70 16 chr11 95600612 95600741 -55182812 - MER104 DNA Tc2 -1 179 44 400 321 46 8 chr11 95601327 95601458 -55182095 + MIR SINE MIR 41 176 -86 363 308 46 8 chr11 95601645 95601775 -55181778 + L2 LINE L2 3179 3313 0 266 288 0 0 chr11 95602576 95602635 -55180918 + MIR SINE MIR 28 86 -176 208 342 26 13 chr11 95602712 95602788 -55180765 - MIR SINE MIR -177 85 9 434 283 117 22 chr11 95603294 95603474 -55180079 - L3 LINE CR1 -574 1003 807 668 151 8 63 chr11 95604964 95605090 -55178463 - FLAM_C SINE Alu -18 125 7 260 76 76 13 chr11 95606517 95606596 -55176957 + (TA)n Simple_repeat Simple_repeat 1 84 0 699 102 0 24 chr11 95607387 95607514 -55176039 + (TTCC)n Simple_repeat Simple_repeat 1 124 0 414 39 0 0 chr11 95607622 95607674 -55175879 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 4252 149 56 9 chr11 95607783 95609127 -55174426 - L1MA2 LINE L1 -414 5890 4474 216 0 0 0 chr11 95609129 95609153 -55174400 + (T)n Simple_repeat Simple_repeat 1 24 0 610 45 0 23 chr11 95609258 95609346 -55174207 + (TTCC)n Simple_repeat Simple_repeat 4 89 0 270 279 16 0 chr11 95609780 95609841 -55173712 + L2 LINE L2 3186 3247 -25 389 109 16 0 chr11 95609878 95609942 -55173611 + (TGGA)n Simple_repeat Simple_repeat 4 68 0 229 360 70 65 chr11 95610486 95610686 -55172867 - L2 LINE L2 -27 3245 3045 458 237 68 8 chr11 95610798 95610916 -55172637 + LTR16A LTR ERVL 320 444 -6 184 340 82 0 chr11 95611653 95611750 -55171803 - L2 LINE L2 -14 3258 3154 40956 67 4 3 chr11 95612367 95618503 -55165050 - L1PA5 LINE L1 -5 6149 1 1109 173 72 5 chr11 95618563 95618771 -55164782 - AluJb SINE Alu -2 310 89 275 250 24 0 chr11 95618815 95618899 -55164654 - L1ME4a LINE L1 -67 6054 5969 3118 138 81 10 chr11 95619715 95620308 -55163245 - LTR24C LTR ERV1 0 635 1 692 206 55 18 chr11 95620308 95620473 -55163080 - MER97b DNA MER1_type? -877 176 6 213 281 115 0 chr11 95620876 95620972 -55162581 - MIR SINE MIR 0 262 156 239 240 16 99 chr11 95621442 95621563 -55161990 + LTR67 LTR ERVL 427 537 -20 190 273 39 65 chr11 95621797 95621874 -55161679 - MIR SINE MIR -63 145 71 616 257 50 15 chr11 95622588 95622790 -55160763 + L2 LINE L2 3105 3313 0 293 320 46 71 chr11 95623007 95623129 -55160424 - L2 LINE L2 -463 2851 2727 1965 151 48 31 chr11 95623129 95623487 -55160066 + THE1B LTR MaLR 1 364 0 293 320 46 71 chr11 95623487 95623645 -55159908 - L2 LINE L2 -587 2727 2578 2066 132 14 0 chr11 95624485 95624780 -55158773 - AluSx SINE Alu -13 299 1 184 404 61 18 chr11 95625191 95625305 -55158248 + L2 LINE L2 3138 3256 -16 363 315 119 7 chr11 95626396 95626539 -55157014 + MIR SINE MIR 20 178 -84 687 267 32 53 chr11 95626592 95626839 -55156714 + MIR SINE MIR 6 247 -15 186 216 0 0 chr11 95626897 95626934 -55156619 - L2 LINE L2 -17 3255 3219 335 309 51 34 chr11 95627275 95627453 -55156100 + L2 LINE L2 3121 3301 -12 4960 163 25 3 chr11 95627566 95628413 -55155140 - MER6 DNA MER2_type 0 865 1 257 315 130 0 chr11 95629192 95629300 -55154253 - MIR SINE MIR -15 247 126 585 273 84 64 chr11 95629532 95629829 -55153724 + L1ME3A LINE L1 5601 5903 -261 1448 191 45 98 chr11 95630995 95631248 -55152305 - MSTD LTR MaLR 0 396 172 2457 133 41 7 chr11 95631248 95631662 -55151891 + MSTA LTR MaLR 1 428 0 1448 191 45 98 chr11 95631662 95631826 -55151727 - MSTD LTR MaLR -224 172 1 304 379 135 14 chr11 95631827 95632115 -55151438 + L2 LINE L2 2873 3195 -77 300 276 106 8 chr11 95633013 95633136 -55150417 + MIR3 SINE MIR 67 201 -7 198 337 24 12 chr11 95633397 95633480 -55150073 + MIR SINE MIR 21 104 -158 337 293 50 14 chr11 95633516 95633656 -55149897 - LTR16C LTR ERVL -3 488 344 1060 312 58 33 chr11 95634116 95634721 -55148832 - ERVL LTR ERVL -398 5366 4747 25058 76 8 8 chr11 95635079 95639344 -55144209 + L1PA6 LINE L1 1882 6138 -16 23 0 0 0 chr11 95639347 95639370 -55144183 + AT_rich Low_complexity Low_complexity 1 23 0 910 335 72 13 chr11 95639484 95639953 -55143600 - ERVL LTR ERVL -3184 2580 2084 1227 231 67 58 chr11 95640444 95640959 -55142594 - MER39 LTR ERV1 -5 702 1 232 369 180 0 chr11 95641726 95641837 -55141716 - L2 LINE L2 -8 3264 3134 482 335 212 27 chr11 95642087 95642791 -55140762 - L2 LINE L2 -411 2903 2070 457 260 30 18 chr11 95642809 95642978 -55140575 + L1M4 LINE L1 2453 2623 -3523 740 224 12 27 chr11 95642997 95643256 -55140297 + L1M4 LINE L1 2833 3087 -3059 242 122 0 0 chr11 95643256 95643297 -55140256 + L1MA2 LINE L1 6076 6116 -188 1964 147 3 10 chr11 95643311 95643623 -55139930 + AluSx SINE Alu 1 310 -2 492 262 133 13 chr11 95643623 95643856 -55139697 + L1M4 LINE L1 4240 4500 -1646 2681 214 7 96 chr11 95644930 95645825 -55137728 + L1P LINE L1 4411 5225 -921 12188 106 8 2 chr11 95645843 95648414 -55135139 - L1PA7 LINE L1 -13 6141 3561 10316 45 8 0 chr11 95648443 95650502 -55133051 - L1PA5 LINE L1 -1 6153 4085 421 311 47 40 chr11 95650594 95650890 -55132663 + L1MEd LINE L1 547 844 -5275 * 6610 182 53 22 chr11 95650876 95652285 -55131268 - L1MC3 LINE L1 -1 7784 6332 485 279 105 46 chr11 95652325 95652940 -55130613 + L1MEd LINE L1 926 1473 -4658 19777 133 27 11 chr11 95653443 95654019 -55129534 + L1PA10 LINE L1 1780 2345 -3823 3275 128 2 27 chr11 95654019 95654541 -55129012 + MER9 LTR ERVK 1 509 -2 19777 133 27 11 chr11 95654541 95657039 -55126514 + L1PA10 LINE L1 2345 4802 -1366 501 0 0 42 chr11 95657039 95657111 -55126442 + (TTTAA)n Simple_repeat Simple_repeat 3 71 0 1861 160 7 0 chr11 95657114 95657395 -55126158 - AluSx SINE Alu -29 283 1 19777 133 27 11 chr11 95657395 95658636 -55124917 + L1PA10 LINE L1 4803 6166 -2 319 284 56 14 chr11 95658627 95658842 -55124711 + L1MEd LINE L1 2156 2379 -3750 * 327 295 11 0 chr11 95658985 95659080 -55124473 - MIR SINE MIR -10 252 157 525 313 23 11 chr11 95659082 95659258 -55124295 - MIR SINE MIR -44 218 41 297 345 7 0 chr11 95659402 95659544 -55124009 + L1MEd LINE L1 2666 2808 -3321 23 33 0 0 chr11 95659607 95659637 -55123916 + AT_rich Low_complexity Low_complexity 1 30 0 10794 206 21 20 chr11 95659733 95663188 -55120365 - L1P5 LINE L1 -363 7229 3778 1627 290 34 5 chr11 95663185 95663767 -55119786 - L1P5 LINE L1 -4798 2783 2185 * 420 290 0 0 chr11 95663997 95664097 -55119456 - L1P5 LINE L1 -5399 2182 2083 1061 346 62 32 chr11 95664202 95664794 -55118759 - L1P5 LINE L1 -6177 1397 788 754 136 8 8 chr11 95664805 95664937 -55118616 - L1 LINE L1 -2134 4012 3881 222 62 0 0 chr11 95664937 95664969 -55118584 + (T)n Simple_repeat Simple_repeat 1 32 0 41916 53 6 0 chr11 95664974 95671091 -55112462 - L1HS LINE L1 0 6155 3 3457 125 40 14 chr11 95671094 95671664 -55111889 - L1MA2 LINE L1 -397 5907 5323 1448 191 45 98 chr11 95672081 95672334 -55111219 - MSTD LTR MaLR 0 396 172 2457 133 41 7 chr11 95672334 95672748 -55110805 + MSTA LTR MaLR 1 428 0 1448 191 45 98 chr11 95672748 95672912 -55110641 - MSTD LTR MaLR -224 172 1 304 379 135 14 chr11 95672913 95673201 -55110352 + L2 LINE L2 2873 3195 -77 300 276 106 8 chr11 95674099 95674222 -55109331 + MIR3 SINE MIR 67 201 -7 198 337 24 12 chr11 95674483 95674566 -55108987 + MIR SINE MIR 21 104 -158 337 293 50 14 chr11 95674602 95674742 -55108811 - LTR16C LTR ERVL -3 488 344 1060 312 58 33 chr11 95675202 95675807 -55107746 - ERVL LTR ERVL -398 5366 4747 25088 76 8 8 chr11 95676165 95680429 -55103124 + L1PA6 LINE L1 1882 6138 -16 23 0 0 0 chr11 95680432 95680455 -55103098 + AT_rich Low_complexity Low_complexity 1 23 0 910 335 72 13 chr11 95680569 95681038 -55102515 - ERVL LTR ERVL -3184 2580 2084 1227 231 67 58 chr11 95681529 95682044 -55101509 - MER39 LTR ERV1 -5 702 1 232 369 180 0 chr11 95682811 95682922 -55100631 - L2 LINE L2 -8 3264 3134 482 335 212 27 chr11 95683172 95683876 -55099677 - L2 LINE L2 -411 2903 2070 457 260 30 18 chr11 95683894 95684063 -55099490 + L1M4 LINE L1 2453 2623 -3523 740 224 12 27 chr11 95684082 95684341 -55099212 + L1M4 LINE L1 2833 3087 -3059 242 122 0 0 chr11 95684341 95684382 -55099171 + L1MA2 LINE L1 6076 6116 -188 1964 147 3 10 chr11 95684396 95684708 -55098845 + AluSx SINE Alu 1 310 -2 492 262 133 13 chr11 95684708 95684941 -55098612 + L1M4 LINE L1 4240 4500 -1646 2681 214 7 96 chr11 95686015 95686910 -55096643 + L1PA16 LINE L1 4411 5225 -921 12188 106 8 2 chr11 95686928 95689499 -55094054 - L1PA7 LINE L1 -13 6141 3561 11739 46 5 1 chr11 95689528 95691766 -55091787 - L1PA5 LINE L1 -1 6153 3909 7746 69 1 0 chr11 95691766 95692809 -55090744 + L1PA5 LINE L1 2870 3913 -2233 * 17958 142 13 93 chr11 95692808 95696682 -55086871 - L1PA7 LINE L1 -2568 3578 12 5252 159 16 0 chr11 95696693 95697609 -55085944 + L1PA16 LINE L1 5217 6145 -21 1171 258 31 17 chr11 95697672 95698091 -55085462 + L1ME LINE L1 5265 5689 -477 1460 227 93 21 chr11 95698101 95698532 -55085021 - MLT1C LTR MaLR 0 467 6 1615 223 19 78 chr11 95698537 95698963 -55084590 - MLT1C-int LTR MaLR 0 1371 971 255 263 0 0 chr11 95700297 95700391 -55083162 + (CA)n Simple_repeat Simple_repeat 1 94 0 205 323 31 0 chr11 95700494 95700559 -55082994 - L2 LINE L2 -1 3312 3246 360 64 0 0 chr11 95700649 95700696 -55082857 + (CA)n Simple_repeat Simple_repeat 2 48 0 192 245 0 0 chr11 95700687 95700740 -55082813 + (TA)n Simple_repeat Simple_repeat 1 53 0 * 280 235 47 0 chr11 95700743 95700828 -55082725 - L1MC4 LINE L1 -1339 6703 6615 1642 171 13 23 chr11 95700833 95701132 -55082421 - MLT2D LTR ERVL -116 298 3 1712 216 31 6 chr11 95701248 95701599 -55081954 - MLT1A1 LTR MaLR -3 362 3 2029 161 13 0 chr11 95701977 95702287 -55081266 + MER1B DNA MER1_type 26 339 0 765 250 116 3 chr11 95702553 95702845 -55080708 - LTR50 LTR ERVL 0 795 471 419 230 218 52 chr11 95702886 95703060 -55080493 - LTR50 LTR ERVL -511 284 82 2799 173 47 36 chr11 95703132 95703850 -55079703 + L1MA8 LINE L1 5524 6287 -4 483 307 62 22 chr11 95703953 95704357 -55079196 + L1MEc LINE L1 2025 2444 -3952 505 218 64 48 chr11 95705237 95705296 -55078257 - L1ME2 LINE L1 -172 5992 5935 749 211 0 0 chr11 95705296 95705429 -55078124 - FLAM_A SINE Alu 0 133 1 505 218 64 48 chr11 95705429 95705555 -55077998 - L1ME2 LINE L1 -229 5935 5797 1472 193 158 14 chr11 95705867 95706298 -55077255 - MER50 LTR ERV1 -2 732 240 189 250 329 0 chr11 95707182 95707258 -55076295 + MIR3 SINE MIR 60 160 -48 361 52 0 35 chr11 95708522 95708580 -55074973 + (CA)n Simple_repeat Simple_repeat 1 56 0 2322 97 0 0 chr11 95709767 95710076 -55073477 - AluY SINE Alu -2 309 1 201 74 0 0 chr11 95711743 95711770 -55071783 + (GA)n Simple_repeat Simple_repeat 2 28 0 301 236 160 49 chr11 95711826 95711970 -55071583 - MER5B DNA MER1_type -18 160 1 223 299 65 32 chr11 95711976 95712130 -55071423 - MIR SINE MIR 0 262 104 822 244 6 12 chr11 95713224 95713392 -55070161 - MER5A DNA MER1_type -6 183 17 690 275 82 25 chr11 95713497 95713741 -55069812 - MIR SINE MIR -1 261 4 255 355 62 38 chr11 95713785 95713996 -55069557 + MIR SINE MIR 34 249 -13 21 0 0 0 chr11 95714143 95714164 -55069389 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 95714701 95714729 -55068824 + AT_rich Low_complexity Low_complexity 1 28 0 360 176 0 0 chr11 95714826 95714894 -55068659 + (TA)n Simple_repeat Simple_repeat 2 69 0 355 261 23 0 chr11 95714894 95714982 -55068571 - L1MC4 LINE L1 -1339 6703 6614 369 374 32 52 chr11 95715163 95715511 -55068042 + L1ME2 LINE L1 44 384 -5735 655 322 104 13 chr11 95715710 95716645 -55066908 + L1ME2 LINE L1 594 1655 -4655 2143 117 0 3 chr11 95716733 95717031 -55066522 + AluSx SINE Alu 1 297 -15 502 339 65 51 chr11 95717033 95717482 -55066071 + L1ME2 LINE L1 1795 2249 -4061 1001 233 138 72 chr11 95717483 95717969 -55065584 - MLT1F LTR MaLR 0 542 25 303 283 136 15 chr11 95717996 95718261 -55065292 + L1ME2 LINE L1 2221 2517 -3612 1661 201 50 31 chr11 95718366 95718848 -55064705 + L1ME2 LINE L1 4407 4897 -1232 822 196 110 24 chr11 95718854 95719063 -55064490 + L1ME2 LINE L1 5677 5903 -244 295 321 36 9 chr11 95719206 95719318 -55064235 + HAL1 LINE L1 339 453 -2054 1335 247 128 50 chr11 95719497 95720158 -55063395 + HAL1 LINE L1 775 1530 -977 243 61 0 0 chr11 95720158 95720191 -55063362 + (TG)n Simple_repeat Simple_repeat 1 33 0 1335 247 128 50 chr11 95720191 95720451 -55063102 + HAL1 LINE L1 1530 1768 -739 1618 196 45 11 chr11 95720474 95720851 -55062702 - MLT1B LTR MaLR 0 390 1 754 285 113 20 chr11 95720852 95721357 -55062196 + HAL1 LINE L1 1846 2397 -110 30 0 0 0 chr11 95721631 95721661 -55061892 + AT_rich Low_complexity Low_complexity 1 30 0 417 318 82 10 chr11 95721738 95721933 -55061620 - MIR SINE MIR -1 261 53 200 57 0 29 chr11 95722437 95722472 -55061081 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 1256 180 50 11 chr11 95723050 95723328 -55060225 + L1MD3 LINE L1 7706 7994 -1 799 100 0 54 chr11 95724380 95724488 -55059065 + L1PA16 LINE L1 6028 6129 -37 1604 146 101 51 chr11 95724488 95724844 -55058709 - THE1C LTR MaLR 0 375 2 799 100 0 54 chr11 95724844 95724865 -55058688 + L1PA16 LINE L1 6129 6150 -16 24 32 0 0 chr11 95724871 95724902 -55058651 + AT_rich Low_complexity Low_complexity 1 31 0 205 286 0 48 chr11 95725263 95725326 -55058227 - L2 LINE L2 -8 3305 3246 1830 166 7 7 chr11 95725363 95725658 -55057895 + AluJb SINE Alu 1 295 -17 402 280 40 8 chr11 95725671 95725796 -55057757 - MIR SINE MIR 0 262 134 26 0 0 0 chr11 95725924 95725950 -55057603 + AT_rich Low_complexity Low_complexity 1 26 0 318 275 83 15 chr11 95725950 95725974 -55057579 - MIR SINE MIR -52 156 135 1803 150 0 27 chr11 95725974 95726268 -55057285 - AluJb SINE Alu -26 286 1 318 275 83 15 chr11 95726268 95726360 -55057193 - MIR SINE MIR -73 135 31 183 279 56 75 chr11 95726666 95726827 -55056726 - L2 LINE L2 -298 2974 2817 298 315 45 0 chr11 95727203 95727292 -55056261 + MIR SINE MIR 49 141 -121 * 442 295 23 8 chr11 95727274 95727403 -55056150 - L2 LINE L2 -2 3311 3181 2199 210 21 76 chr11 95727420 95728048 -55055505 - MLT1E2 LTR MaLR 0 626 34 347 354 79 57 chr11 95728096 95728503 -55055050 + L2 LINE L2 2524 2939 -375 834 281 86 0 chr11 95728716 95728937 -55054616 - MIR SINE MIR -21 241 2 2036 219 22 95 chr11 95728974 95729649 -55053904 + MLT1E2 LTR MaLR 1 626 0 271 256 146 0 chr11 95729976 95730058 -55053495 + MIR SINE MIR 168 261 -1 257 309 101 22 chr11 95730052 95730191 -55053362 - MIR SINE MIR -108 154 5 * 1752 137 54 98 chr11 95730627 95731035 -55052518 + MLT1B LTR MaLR 1 390 0 416 412 55 22 chr11 95731458 95732041 -55051512 + L2 LINE L2 2364 2965 -349 634 274 44 20 chr11 95732101 95732305 -55051248 + MIR SINE MIR 54 262 0 22 35 0 0 chr11 95733016 95733045 -55050508 + AT_rich Low_complexity Low_complexity 1 29 0 2518 78 0 0 chr11 95733264 95733573 -55049980 - AluY SINE Alu 0 311 3 633 261 167 9 chr11 95733965 95734187 -55049366 - MIR SINE MIR 0 262 6 210 313 25 0 chr11 95735275 95735355 -55048198 + GA-rich Low_complexity Low_complexity 1 82 0 496 265 138 26 chr11 95736110 95736299 -55047254 + MIR SINE MIR 23 232 -30 1783 133 4 0 chr11 95736316 95736571 -55046982 + THE1C LTR MaLR 1 256 -119 267 308 37 19 chr11 95736904 95737011 -55046542 + MER94 DNA DNA 26 134 0 244 226 16 16 chr11 95737109 95737171 -55046382 + CT-rich Low_complexity Low_complexity 1 62 0 450 154 0 0 chr11 95737930 95738008 -55045545 + (CA)n Simple_repeat Simple_repeat 1 78 0 355 383 32 7 chr11 95738716 95738901 -55044652 + MIR SINE MIR 12 198 -64 554 349 55 4 chr11 95739512 95739747 -55043806 - MIR SINE MIR -13 249 3 1140 228 140 73 chr11 95740206 95741197 -55042356 + L1ME LINE L1 600 1683 -4532 846 274 46 16 chr11 95741197 95741700 -55041853 + L1ME LINE L1 2020 2501 -3714 1473 256 99 23 chr11 95741714 95742669 -55040884 + L1ME LINE L1 2548 3575 -2640 320 252 8 79 chr11 95744403 95744530 -55039023 - MER94 DNA DNA -16 118 1 366 23 0 0 chr11 95745869 95745912 -55037641 + (CA)n Simple_repeat Simple_repeat 1 43 0 230 390 52 0 chr11 95746395 95746472 -55037081 + L2 LINE L2 3143 3223 -49 1110 219 53 79 chr11 95746973 95747443 -55036110 - MER39 LTR ERV1 0 707 250 1459 209 61 33 chr11 95748365 95748728 -55034825 + MLT1A2 LTR MaLR 2 374 0 1009 230 123 107 chr11 95748885 95749380 -55034173 - MLT1D LTR MaLR 0 505 3 2298 85 0 3 chr11 95749953 95750247 -55033306 - AluY SINE Alu -18 293 1 801 321 91 12 chr11 95751248 95751653 -55031900 + MLT1J2 LTR MaLR 1 437 -13 189 107 0 0 chr11 95751839 95751867 -55031686 + (TTC)n Simple_repeat Simple_repeat 1 28 0 313 75 0 38 chr11 95751867 95751920 -55031633 - L1PA8 LINE L1 0 6172 6122 7349 44 2 0 chr11 95752012 95753396 -55030157 - L1PA5 LINE L1 0 6154 4774 21 0 0 0 chr11 95753800 95753821 -55029732 + AT_rich Low_complexity Low_complexity 1 21 0 284 216 18 36 chr11 95754080 95754191 -55029362 + A-rich Low_complexity Low_complexity 2 110 0 28 86 0 0 chr11 95754282 95754352 -55029201 + AT_rich Low_complexity Low_complexity 1 70 0 231 240 52 42 chr11 95754650 95754746 -55028807 + L1ME LINE L1 5544 5640 -481 879 291 57 37 chr11 95754749 95755209 -55028344 - MLT1K LTR MaLR -1 587 119 24 0 0 0 chr11 95755934 95755958 -55027595 + AT_rich Low_complexity Low_complexity 1 24 0 5877 151 32 5 chr11 95756062 95757052 -55026501 + HSMAR2 DNA Mariner 140 1156 -146 5575 88 8 0 chr11 95757052 95757829 -55025724 + L1PA13 LINE L1 5379 6161 -2 566 133 0 41 chr11 95757927 95758025 -55025528 + HSMAR2 DNA Mariner 1155 1248 -54 276 344 81 31 chr11 95758100 95758260 -55025293 + L2 LINE L2 3105 3272 0 407 297 70 42 chr11 95758285 95758532 -55025021 + MIR SINE MIR 8 256 -6 28 38 0 19 chr11 95759424 95759437 -55024116 + AT_rich Low_complexity Low_complexity 1 13 -39 216 97 0 0 chr11 95759437 95759468 -55024085 + (CTATA)n Simple_repeat Simple_repeat 5 35 0 28 38 0 19 chr11 95759468 95759507 -55024046 + AT_rich Low_complexity Low_complexity 13 52 0 407 279 119 11 chr11 95759707 95759881 -55023672 - MIR3 SINE MIR -59 203 12 1772 212 57 36 chr11 95760313 95760808 -55022745 + MLT1D LTR MaLR 1 505 0 227 127 63 0 chr11 95760828 95760891 -55022662 + GA-rich Low_complexity Low_complexity 3 69 0 221 273 0 30 chr11 95761774 95761840 -55021713 - L2 LINE L2 -1 3312 3249 948 334 10 3 chr11 95762014 95762328 -55021225 + MLT2E LTR ERVL 1 316 -312 691 353 9 0 chr11 95762849 95763073 -55020480 - MIR SINE MIR -3 259 34 2607 142 21 2 chr11 95763231 95763653 -55019900 + MSTB1 LTR MaLR 3 432 0 432 37 0 0 chr11 95763723 95763777 -55019776 + (GA)n Simple_repeat Simple_repeat 1 54 0 438 282 135 38 chr11 95763911 95764230 -55019323 + LTR16A1 LTR ERVL 13 362 -95 530 302 62 13 chr11 95764395 95764620 -55018933 - MIR SINE MIR -25 237 2 30 27 0 0 chr11 95766698 95766735 -55016818 + AT_rich Low_complexity Low_complexity 1 37 0 1347 281 195 27 chr11 95766785 95767438 -55016115 - L1ME3A LINE L1 -118 6052 5304 5149 194 36 23 chr11 95767441 95768945 -55014608 - L1MC2 LINE L1 -14 6330 4810 378 214 0 0 chr11 95769014 95769098 -55014455 + (TATATG)n Simple_repeat Simple_repeat 2 85 0 527 305 71 0 chr11 95769099 95769381 -55014172 - L1ME3A LINE L1 -874 5272 4971 2530 150 22 61 chr11 95769430 95769622 -55013931 + L1MA7 LINE L1 5170 5368 -923 1597 32 0 0 chr11 95769622 95769807 -55013746 + L1PA5 LINE L1 5957 6145 -9 2530 150 22 61 chr11 95769807 95770193 -55013360 + L1MA7 LINE L1 5368 5734 -557 1248 153 32 32 chr11 95770198 95770479 -55013074 + L1MA7 LINE L1 6011 6291 0 976 266 82 25 chr11 95770514 95771183 -55012370 - L1ME3A LINE L1 -1207 4939 4075 347 313 10 0 chr11 95771305 95771404 -55012149 + LTR16B LTR ERVL 8 107 -357 440 233 201 6 chr11 95771487 95771646 -55011907 + LTR16B LTR ERVL 275 464 0 390 271 52 73 chr11 95772363 95772555 -55010998 + MIR SINE MIR 4 191 -71 375 315 85 50 chr11 95773104 95773304 -55010249 - MIR SINE MIR -43 219 13 234 91 0 0 chr11 95773359 95773392 -55010161 + (TA)n Simple_repeat Simple_repeat 2 34 0 828 24 47 0 chr11 95773401 95773528 -55010025 + (TCTA)n Simple_repeat Simple_repeat 3 135 0 21 57 0 0 chr11 95775034 95775069 -55008484 + AT_rich Low_complexity Low_complexity 1 35 0 271 294 35 0 chr11 95775355 95775440 -55008113 + MLT1J2 LTR MaLR 15 102 -348 439 260 142 35 chr11 95775557 95775726 -55007827 + MLT1J2 LTR MaLR 264 450 0 363 280 116 26 chr11 95775947 95776136 -55007417 - L2 LINE L2 0 3313 3108 808 221 6 0 chr11 95776139 95776297 -55007256 - FRAM SINE Alu -16 160 2 240 242 65 16 chr11 95776302 95776364 -55007189 + L2 LINE L2 3225 3289 -24 354 335 91 28 chr11 95777477 95777653 -55005900 - MER5A DNA MER1_type -1 188 2 256 353 105 20 chr11 95777670 95777823 -55005730 - L2 LINE L2 0 3272 3107 425 343 72 0 chr11 95778469 95778650 -55004903 + MIR SINE MIR 14 207 -55 1737 250 13 28 chr11 95778708 95779168 -55004385 + MLT1D LTR MaLR 51 503 -2 225 233 100 0 chr11 95779947 95780007 -55003546 + MER5A DNA MER1_type 42 107 -82 185 340 0 0 chr11 95780001 95780054 -55003499 - MER5A DNA MER1_type -112 77 25 * 367 290 111 19 chr11 95780107 95780269 -55003284 + MER5B DNA MER1_type 1 177 -1 2547 45 33 12 chr11 95781102 95781439 -55002114 + LTR14A LTR ERVK 1 344 0 183 42 0 0 chr11 95781467 95781491 -55002062 + (TG)n Simple_repeat Simple_repeat 1 24 0 432 206 54 0 chr11 95781611 95781703 -55001850 - MER63 DNA MER1_type -336 726 4 277 304 95 34 chr11 95781803 95781951 -55001602 - MIR SINE MIR -50 212 56 304 303 96 46 chr11 95782214 95782432 -55001121 - MIR SINE MIR -29 233 5 459 279 126 5 chr11 95782657 95782847 -55000706 + MIR SINE MIR 47 259 -3 1394 266 47 30 chr11 95783037 95783507 -55000046 - HsTC2a DNA Tc2 -266 478 1 397 303 97 17 chr11 95783552 95783727 -54999826 + MIR SINE MIR 20 208 -54 212 343 15 0 chr11 95784525 95784592 -54998961 + L2 LINE L2 2988 3055 -258 236 161 0 36 chr11 95784626 95784682 -54998871 + (TAA)n Simple_repeat Simple_repeat 2 55 0 426 267 152 32 chr11 95784682 95784899 -54998654 - MIR SINE MIR 0 262 20 227 336 136 9 chr11 95784994 95785104 -54998449 + L2 LINE L2 3139 3262 -10 276 342 77 0 chr11 95785159 95785276 -54998277 - L2 LINE L2 -2 3311 3186 214 408 17 8 chr11 95785324 95785444 -54998109 - MIR3 SINE MIR -1 207 87 194 341 82 30 chr11 95785805 95785940 -54997613 + L2 LINE L2 2871 3012 -260 183 305 17 34 chr11 95785949 95786008 -54997545 - L2 LINE L2 0 3272 3215 773 229 0 25 chr11 95786030 95786187 -54997366 - MER45A DNA AcHobo -25 153 1 201 284 15 30 chr11 95786903 95786970 -54996583 - L2 LINE L2 -47 3225 3160 460 312 123 55 chr11 95787390 95787787 -54995766 + L2 LINE L2 2442 2865 -449 328 195 81 35 chr11 95788461 95788548 -54995005 - L1MC4 LINE L1 -1339 6703 6613 1235 209 7 33 chr11 95788666 95788967 -54994586 - L1MB2 LINE L1 -7 6164 5872 1883 181 16 11 chr11 95788979 95789355 -54994198 - L1MB2 LINE L1 -1400 4746 4369 282 116 47 23 chr11 95789870 95789956 -54993597 + (TA)n Simple_repeat Simple_repeat 2 89 0 245 154 269 0 chr11 95790661 95790739 -54992814 - MIR SINE MIR -48 214 116 379 280 196 5 chr11 95791810 95792021 -54991532 + MIR SINE MIR 3 244 -18 569 271 16 8 chr11 95793636 95793765 -54989788 + L2 LINE L2 3137 3266 -6 499 373 11 0 chr11 95794226 95794411 -54989142 + L3 LINE CR1 1384 1570 -7 197 310 70 0 chr11 95794508 95794579 -54988974 + MIR SINE MIR 68 143 -119 310 290 114 48 chr11 95795143 95795433 -54988120 - L2 LINE L2 0 3313 3005 195 200 24 106 chr11 95795643 95795728 -54987825 - L3 LINE CR1 -315 1262 1185 597 128 24 16 chr11 95795805 95795930 -54987623 + GA-rich Low_complexity Low_complexity 4 129 0 220 87 0 43 chr11 95795971 95796017 -54987536 + (GGAA)n Simple_repeat Simple_repeat 3 46 0 190 275 187 11 chr11 95797252 95797343 -54986210 - MIR SINE MIR -108 154 48 2607 269 46 51 chr11 95797466 95799218 -54984335 - L1M4 LINE L1 -1202 4944 3112 4303 136 31 3 chr11 95799255 95799968 -54983585 - L1PA16 LINE L1 -9 6157 5425 741 274 77 52 chr11 95799981 95800602 -54982951 - L1MEc LINE L1 -4974 1422 786 286 309 93 0 chr11 95801082 95801221 -54982332 - L1MEc LINE L1 -6078 318 167 487 291 86 6 chr11 95801515 95801690 -54981863 + MIR SINE MIR 71 259 -3 660 305 66 46 chr11 95801925 95802535 -54981018 - L1MC4a LINE L1 -1874 5934 5313 24 53 0 0 chr11 95802674 95802712 -54980841 + AT_rich Low_complexity Low_complexity 1 38 0 231 88 0 0 chr11 95804593 95804627 -54978926 + (TC)n Simple_repeat Simple_repeat 1 34 0 460 280 47 0 chr11 95804628 95804640 -54978913 - L1MA10 LINE L1 -3 6331 6320 413 284 45 34 chr11 95804640 95804816 -54978737 - L1ME1 LINE L1 -6 6160 5983 1847 236 62 14 chr11 95804829 95805329 -54978224 - L1ME1 LINE L1 -255 5911 5388 * 7526 243 65 32 chr11 95805328 95805784 -54977769 - L1ME LINE L1 -722 5513 5073 2120 110 14 3 chr11 95805784 95806076 -54977477 - AluSc SINE Alu -14 295 1 7526 243 65 32 chr11 95806076 95808012 -54975541 - L1ME LINE L1 -1162 5073 2993 240 35 0 0 chr11 95808012 95808041 -54975512 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 7526 243 65 32 chr11 95808041 95808671 -54974882 - L1ME LINE L1 -3242 2993 2385 1502 191 68 104 chr11 95808682 95809152 -54974401 + MSTB2 LTR MaLR 2 454 -3 4826 279 106 19 chr11 95809157 95810344 -54973209 + MLT-int LTR MaLR 2 1364 -371 3962 107 45 27 chr11 95810344 95810968 -54972585 + MER41B LTR ERV1 1 635 0 4826 279 106 19 chr11 95810968 95811376 -54972177 + MLT-int LTR MaLR 1364 1735 0 2249 189 34 7 chr11 95811381 95811821 -54971732 + MSTB2 LTR MaLR 6 457 0 332 191 11 11 chr11 95811832 95811921 -54971632 - L1ME LINE L1 -3997 2399 2311 554 160 83 7 chr11 95811959 95812103 -54971450 - L1MA8 LINE L1 -3 6288 6134 2346 205 15 15 chr11 95812103 95812576 -54970977 + MER54A LTR ERVL 394 866 -35 338 184 13 26 chr11 95812594 95812670 -54970883 - L1MA8 LINE L1 -186 6105 6031 22 0 0 0 chr11 95812702 95812724 -54970829 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr11 95812911 95812935 -54970618 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr11 95813273 95813294 -54970259 + AT_rich Low_complexity Low_complexity 1 21 0 3742 175 51 15 chr11 95813392 95814607 -54968946 - L1MA7 LINE L1 -250 6041 4786 * 6137 213 22 34 chr11 95814602 95816262 -54967291 - L1MA7 LINE L1 -2103 4043 2404 992 250 104 8 chr11 95816262 95816522 -54967031 - MSTD LTR MaLR 0 396 112 2043 177 70 13 chr11 95816537 95816921 -54966632 + MER47B DNA MER2_type 1 406 -12 230 94 75 0 chr11 95816927 95816980 -54966573 + (TA)n Simple_repeat Simple_repeat 2 58 0 492 264 74 0 chr11 95817024 95817145 -54966408 + L2 LINE L2 3141 3270 -2 191 300 0 0 chr11 95817902 95817952 -54965601 + MIR SINE MIR 92 141 -67 200 316 38 0 chr11 95818079 95818158 -54965395 + L2 LINE L2 3231 3312 -1 251 301 21 21 chr11 95818164 95818257 -54965296 + GA-rich Low_complexity Low_complexity 4 96 0 269 157 22 45 chr11 95818271 95818360 -54965193 + GA-rich Low_complexity Low_complexity 1 87 0 22 0 0 0 chr11 95818797 95818819 -54964734 + AT_rich Low_complexity Low_complexity 1 22 0 354 45 0 0 chr11 95818929 95818973 -54964580 + (TG)n Simple_repeat Simple_repeat 1 44 0 346 335 121 0 chr11 95819109 95819282 -54964271 - MIR SINE MIR 0 262 69 322 306 106 12 chr11 95819453 95819613 -54963940 - MIR SINE MIR -39 223 49 425 341 35 12 chr11 95820048 95820218 -54963335 - MIR SINE MIR -76 186 13 206 234 21 0 chr11 95820237 95820284 -54963269 + (TG)n Simple_repeat Simple_repeat 1 48 0 291 254 17 0 chr11 95820713 95820772 -54962781 - L2 LINE L2 0 3272 3213 216 0 0 0 chr11 95820778 95820802 -54962751 + (TTAGGG)n Simple_repeat Simple_repeat 2 25 0 204 292 101 34 chr11 95820861 95820950 -54962603 + L2 LINE L2 3173 3267 -5 465 314 66 18 chr11 95821075 95821301 -54962252 + L3 LINE CR1 1324 1560 -17 26 0 0 0 chr11 95821688 95821714 -54961839 + AT_rich Low_complexity Low_complexity 1 26 0 212 253 110 44 chr11 95821747 95821838 -54961715 + MIR SINE MIR 52 148 -114 264 30 0 0 chr11 95821889 95821922 -54961631 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 239 356 61 0 chr11 95822585 95822700 -54960853 + L2 LINE L2 3150 3271 -1 406 224 41 0 chr11 95823059 95823157 -54960396 + MIR SINE MIR 53 154 -108 1687 169 16 38 chr11 95823166 95823516 -54960037 + AluJo SINE Alu 1 343 0 189 254 270 0 chr11 95823535 95823598 -54959955 + MIR SINE MIR 181 260 -2 21 36 0 0 chr11 95823873 95823901 -54959652 + AT_rich Low_complexity Low_complexity 1 28 0 1976 173 0 0 chr11 95824214 95824521 -54959032 + AluSx SINE Alu 1 307 -5 252 265 80 31 chr11 95824555 95824717 -54958836 - L1ME4a LINE L1 -107 6014 5845 7676 22 2 0 chr11 95824945 95826598 -54956955 - L1PA4 LINE L1 -2 6153 4501 1342 40 0 23 chr11 95827511 95827684 -54955869 + L1PA8 LINE L1 5998 6166 -6 411 319 151 57 chr11 95828641 95829111 -54954442 + MLT1K LTR MaLR 11 524 -64 360 264 146 77 chr11 95830107 95830471 -54953082 - LTR50 LTR ERVL -8 787 127 22 0 0 0 chr11 95830903 95830925 -54952628 + AT_rich Low_complexity Low_complexity 1 22 0 1584 154 82 6 chr11 95830925 95831256 -54952297 - L1MD1 LINE L1 -15 6227 5872 2349 188 53 65 chr11 95831257 95832155 -54951398 - L1MD1 LINE L1 -743 5403 4556 1548 250 69 25 chr11 95832162 95832686 -54950867 - L1MD1 LINE L1 -1804 4342 3796 37782 42 8 5 chr11 95832789 95837621 -54945932 - L1P3 LINE L1 -782 5679 13 338 260 93 7 chr11 95837627 95837777 -54945776 + L1PBa LINE L1 303 465 -6398 181 307 114 11 chr11 95838287 95838375 -54945178 - L2 LINE L2 -173 3099 3003 377 248 26 8 chr11 95838392 95838509 -54945044 - L1ME4a LINE L1 -3 6118 6000 42 71 0 0 chr11 95838547 95838631 -54944922 + AT_rich Low_complexity Low_complexity 1 84 0 545 261 42 7 chr11 95838700 95838842 -54944711 - L2 LINE L2 -4 3309 3163 347 313 72 34 chr11 95838990 95839006 -54944547 - L1ME LINE L1 -576 5545 5531 1282 195 34 63 chr11 95839006 95839355 -54944198 + MER44D DNA MER2_type 1 609 0 347 313 72 34 chr11 95839355 95839546 -54944007 - L1ME LINE L1 -590 5531 5330 190 291 0 0 chr11 95839573 95839628 -54943925 - L2 LINE L2 -298 2974 2920 312 378 17 0 chr11 95839903 95840022 -54943531 + MLT1I LTR MaLR 156 276 -133 953 177 86 0 chr11 95840941 95841116 -54942437 + L1PA16 LINE L1 5968 6157 -9 226 143 54 0 chr11 95841255 95841311 -54942242 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 273 280 91 91 chr11 95841386 95841473 -54942080 - MER112 DNA MER1_type 0 260 174 270 0 0 0 chr11 95841473 95841503 -54942050 + (CA)n Simple_repeat Simple_repeat 1 30 0 273 280 91 91 chr11 95841503 95841590 -54941963 - MER112 DNA MER1_type -85 175 86 21 0 0 0 chr11 95841676 95841697 -54941856 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr11 95842325 95842359 -54941194 + (TA)n Simple_repeat Simple_repeat 2 35 0 679 273 114 0 chr11 95842362 95842695 -54940858 - L1M4 LINE L1 -2384 3762 3392 3905 236 130 43 chr11 95842701 95843642 -54939911 - L1MDa LINE L1 -5161 1379 297 207 0 0 0 chr11 95843642 95843665 -54939888 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3905 236 130 43 chr11 95843665 95843991 -54939562 - L1MDa LINE L1 -6243 297 1 354 45 0 0 chr11 95844371 95844415 -54939138 + (CA)n Simple_repeat Simple_repeat 2 45 0 1438 147 0 135 chr11 95844577 95844910 -54938643 + AluJb SINE Alu 1 288 -14 567 171 83 37 chr11 95844912 95845128 -54938425 + L1M4 LINE L1 3038 3263 -2883 236 254 28 0 chr11 95845559 95845630 -54937923 + L1MC4 LINE L1 6624 6696 -1346 180 111 0 0 chr11 95845634 95845661 -54937892 + (GA)n Simple_repeat Simple_repeat 2 28 0 1825 141 44 0 chr11 95845663 95845933 -54937620 - AluSx SINE Alu -30 282 1 194 226 97 86 chr11 95845994 95846087 -54937466 - L2 LINE L2 -10 3262 3169 196 98 0 39 chr11 95846179 95846230 -54937323 + (TA)n Simple_repeat Simple_repeat 1 49 0 1089 159 58 0 chr11 95846489 95846696 -54936857 - Tigger1 DNA MER2_type 0 2418 2200 565 199 13 93 chr11 95846692 95846843 -54936710 - Tigger1 DNA MER2_type -2279 139 1 * 317 313 43 0 chr11 95848133 95848248 -54935305 - MIR3 SINE MIR -2 206 87 551 255 90 32 chr11 95848373 95848582 -54934971 - MIR SINE MIR -14 248 38 7492 30 7 9 chr11 95848893 95850400 -54933153 - L1PA4 LINE L1 -3 6152 4647 376 261 261 0 chr11 95851366 95851508 -54932045 - MER5A DNA MER1_type -1 188 10 24 32 0 0 chr11 95852468 95852499 -54931054 + AT_rich Low_complexity Low_complexity 1 31 0 182 323 42 21 chr11 95852634 95852730 -54930823 - L2 LINE L2 0 3313 3216 1089 159 58 0 chr11 95853177 95853384 -54930169 - Tigger1 DNA MER2_type 0 2418 2200 404 192 48 96 chr11 95853380 95853526 -54930027 - Tigger1 DNA MER2_type -2279 139 1 * 2075 117 3 3 chr11 96053637 96053959 -54729594 - AluSq SINE Alu 0 324 3 226 245 0 0 chr11 96055446 96055495 -54728058 + Charlie8 DNA MER1_type 2344 2392 -25 3699 186 14 32 chr11 96055772 96055843 -54727710 - L1PB4 LINE L1 -2 6154 6083 4961 110 1 4 chr11 96055843 96056536 -54727017 + LTR8 LTR ERV1 1 691 0 3699 186 14 32 chr11 96056536 96056720 -54726833 - L1PB4 LINE L1 -73 6083 5897 1483 161 88 0 chr11 96056720 96056981 -54726572 - AluSx SINE Alu -12 300 17 3699 186 14 32 chr11 96056981 96057539 -54726014 - L1PB4 LINE L1 -259 5897 5355 476 327 19 23 chr11 96057747 96057961 -54725592 - MIR SINE MIR -3 259 47 761 265 75 26 chr11 96058154 96058412 -54725141 - MIR SINE MIR 0 262 1 634 212 0 0 chr11 96058525 96058657 -54724896 + FLAM_A SINE Alu 1 132 -1 524 225 107 35 chr11 96058790 96058959 -54724594 - MIR SINE MIR 0 262 82 1092 146 81 29 chr11 96059621 96059788 -54723765 + Tigger7 DNA MER2_type 2329 2515 -72 358 36 36 0 chr11 96059788 96059844 -54723709 + (TA)n Simple_repeat Simple_repeat 1 58 0 1092 146 81 29 chr11 96059844 96059922 -54723631 + Tigger7 DNA MER2_type 2515 2587 0 841 164 27 0 chr11 96060683 96060829 -54722724 - Tigger3(Golem) DNA MER2_type -89 2940 2791 16372 228 37 20 chr11 96060835 96066772 -54716781 + L1PA12 LINE L1 1 6731 -853 462 162 0 81 chr11 96066773 96066872 -54716681 + FRAM SINE Alu 62 152 -24 413 209 9 0 chr11 96066943 96066983 -54716570 + (TA)n Simple_repeat Simple_repeat 2 40 -77 1408 193 12 109 chr11 96066983 96067387 -54716166 + MLT1A1 LTR MaLR 1 365 0 413 209 9 0 chr11 96067387 96067461 -54716092 + (TA)n Simple_repeat Simple_repeat 40 117 0 1513 283 63 20 chr11 96067690 96068199 -54715354 + MER34 LTR ERV1 12 542 0 277 339 59 25 chr11 96068321 96068439 -54715114 + MIR3 SINE MIR 14 135 -73 370 300 104 47 chr11 96069463 96069795 -54713758 + L1ME LINE L1 5255 5567 -554 2342 101 6 41 chr11 96069795 96070161 -54713392 + THE1A LTR MaLR 3 355 0 11276 109 4 2 chr11 96070161 96071737 -54711816 + THE1A-int LTR MaLR 1 1580 0 2764 84 0 0 chr11 96071737 96072092 -54711461 + THE1A LTR MaLR 1 355 0 370 300 104 47 chr11 96072092 96072223 -54711330 + L1ME LINE L1 5566 5731 -390 257 224 45 0 chr11 96072241 96072308 -54711245 + L1ME LINE L1 5790 5859 -262 300 120 0 0 chr11 96072487 96072537 -54711016 + (TAAA)n Simple_repeat Simple_repeat 1 50 0 300 27 0 0 chr11 96072845 96072882 -54710671 + (CA)n Simple_repeat Simple_repeat 2 38 0 390 302 84 69 chr11 96073507 96073709 -54709844 + MIR SINE MIR 14 218 -44 2738 171 15 42 chr11 96073775 96074300 -54709253 + MLT2B2 LTR ERVL 5 515 0 195 204 41 20 chr11 96075206 96075255 -54708298 + MER5B DNA MER1_type 74 123 -55 491 271 78 20 chr11 96075298 96075542 -54708011 + L1ME3A LINE L1 5683 5940 -230 497 283 26 71 chr11 96076171 96076440 -54707113 - MIR SINE MIR -2 260 4 723 154 24 0 chr11 96077698 96077821 -54705732 - THE1B LTR MaLR 0 364 239 2460 96 38 11 chr11 96077821 96078187 -54705366 + THE1C-int LTR MaLR 1205 1580 0 1744 137 54 29 chr11 96078189 96078503 -54705050 + THE1C LTR MaLR 3 324 -51 2541 68 0 0 chr11 96079380 96079689 -54703864 + AluY SINE Alu 1 309 -2 204 146 24 0 chr11 96080662 96080703 -54702850 + T-rich Low_complexity Low_complexity 3 44 0 809 318 120 5 chr11 96081431 96081880 -54701673 - L2 LINE L2 -19 3294 2801 272 193 167 88 chr11 96081885 96081999 -54701554 + MER63 DNA MER1_type 2 750 -312 227 175 0 0 chr11 96082000 96082040 -54701513 + MER63 DNA MER1_type 976 1015 -45 287 327 95 12 chr11 96082722 96082890 -54700663 - L2 LINE L2 -261 3011 2830 283 277 62 0 chr11 96082906 96082971 -54700582 - MER91A DNA MER1_type 0 196 128 353 313 23 0 chr11 96083261 96083389 -54700164 + MIR SINE MIR 127 257 -5 583 274 20 7 chr11 96083398 96083551 -54700002 - L2 LINE L2 -598 2716 2562 750 224 77 80 chr11 96083586 96083876 -54699677 - L1MC5 LINE L1 -201 7760 7471 360 0 0 0 chr11 96083876 96083916 -54699637 + (CA)n Simple_repeat Simple_repeat 2 41 0 750 224 77 80 chr11 96083916 96084135 -54699418 - L1MC5 LINE L1 -490 7471 7253 229 279 96 87 chr11 96084273 96084743 -54698810 - HAL1b LINE L1 -808 540 67 334 354 14 41 chr11 96085863 96086010 -54697543 - MIR SINE MIR -110 152 10 24 77 0 0 chr11 96086930 96086982 -54696571 + AT_rich Low_complexity Low_complexity 1 52 0 894 356 97 32 chr11 96087789 96088249 -54695304 + L2 LINE L2 2286 2813 -500 747 196 22 0 chr11 96088249 96088433 -54695120 + MER53 DNA DNA 2 189 0 894 356 97 32 chr11 96088433 96088706 -54694847 + L2 LINE L2 2813 3067 -246 2280 195 36 6 chr11 96089000 96089472 -54694081 + MER66B LTR ERV1 1 486 0 32 0 0 0 chr11 96091208 96091240 -54692313 + AT_rich Low_complexity Low_complexity 1 32 0 369 324 138 9 chr11 96091328 96091538 -54692015 + MIR SINE MIR 20 256 -6 222 376 0 88 chr11 96092335 96092561 -54690992 + L2 LINE L2 3042 3247 -25 452 172 50 0 chr11 96092833 96092932 -54690621 - L1MA3 LINE L1 0 6305 6202 262 62 0 42 chr11 96092926 96092974 -54690579 + L1MA2 LINE L1 6036 6081 -223 * 1969 223 0 0 chr11 96092978 96093413 -54690140 - L1 LINE L1 -848 6717 6283 * 6121 210 117 11 chr11 96093408 96094790 -54688763 - L1 LINE L1 -6017 1548 20 2173 88 0 3 chr11 96094801 96095119 -54688434 - AluY SINE Alu 0 317 1 244 259 106 12 chr11 96097441 96097526 -54686027 - L2 LINE L2 -1 3271 3179 212 333 51 26 chr11 96098147 96098264 -54685289 + MIR3 SINE MIR 87 206 -2 2447 80 0 0 chr11 96099477 96099778 -54683775 + AluY SINE Alu 1 301 -10 424 261 58 22 chr11 96099873 96100011 -54683542 + MER5A DNA MER1_type 44 186 -3 249 299 92 54 chr11 96100517 96100585 -54682968 - L2 LINE L2 -5 3308 3244 968 212 9 44 chr11 96100585 96100811 -54682742 + MER20 DNA MER1_type 2 219 0 249 299 92 54 chr11 96100811 96100926 -54682627 - L2 LINE L2 -69 3244 3118 1312 180 12 17 chr11 96101209 96101529 -54682024 - MLT1A1 LTR MaLR 0 365 1 432 366 59 11 chr11 96101858 96102131 -54681422 + MLT1K LTR MaLR 205 490 -98 281 320 50 10 chr11 96102348 96102448 -54681105 - MIR SINE MIR -158 104 1 731 264 92 4 chr11 96102627 96102854 -54680699 - MIR SINE MIR -14 248 2 290 202 0 11 chr11 96103207 96103296 -54680257 + (TA)n Simple_repeat Simple_repeat 1 88 0 22 88 0 0 chr11 96103516 96103573 -54679980 + AT_rich Low_complexity Low_complexity 1 57 0 361 292 54 88 chr11 96103701 96104054 -54679499 + L1MC4a LINE L1 5589 5929 -1879 1469 195 0 34 chr11 96105107 96105399 -54678154 + AluJb SINE Alu 1 282 -30 315 85 0 0 chr11 96105411 96105458 -54678095 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 243 204 0 0 chr11 96105458 96105512 -54678041 + (TA)n Simple_repeat Simple_repeat 2 55 0 186 118 0 0 chr11 96105579 96105613 -54677940 + (GA)n Simple_repeat Simple_repeat 2 35 0 257 363 49 0 chr11 96105762 96105864 -54677689 + L2 LINE L2 3154 3260 -12 21 0 0 0 chr11 96105887 96105908 -54677645 + AT_rich Low_complexity Low_complexity 1 21 0 240 233 55 0 chr11 96105963 96106036 -54677517 + MLT1I LTR MaLR 94 170 -379 389 248 0 34 chr11 96106160 96106277 -54677276 + MLT1I LTR MaLR 278 390 -19 214 164 57 31 chr11 96106389 96106494 -54677059 + (TA)n Simple_repeat Simple_repeat 2 114 -50 1797 175 20 6 chr11 96106494 96106836 -54676717 + MER7A DNA MER2_type 2 346 0 214 164 57 31 chr11 96106836 96106889 -54676664 + (TA)n Simple_repeat Simple_repeat 114 164 0 22 70 0 0 chr11 96106891 96106934 -54676619 + AT_rich Low_complexity Low_complexity 1 43 0 21 71 0 0 chr11 96107143 96107185 -54676368 + AT_rich Low_complexity Low_complexity 1 42 0 2140 114 10 7 chr11 96107205 96107511 -54676042 - AluSx SINE Alu -5 307 1 216 350 40 30 chr11 96107522 96107622 -54675931 - L2 LINE L2 -1 3271 3171 433 336 94 8 chr11 96107926 96108161 -54675392 + MIR SINE MIR 8 262 0 485 284 140 36 chr11 96109347 96109597 -54673956 - MLT1L LTR MaLR -301 314 39 189 0 0 0 chr11 96109635 96109656 -54673897 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 826 296 40 47 chr11 96110505 96110691 -54672862 - L1M4 LINE L1 -1044 5102 4916 2138 125 73 14 chr11 96110691 96111035 -54672518 + THE1B LTR MaLR 1 364 0 11288 95 2 40 chr11 96111035 96112678 -54670875 + THE1B-int LTR MaLR 1 1580 0 2048 135 85 18 chr11 96112678 96113019 -54670534 + THE1B LTR MaLR 1 364 0 826 296 40 47 chr11 96113019 96113448 -54670105 - L1M4 LINE L1 -1227 4919 4489 * 2419 276 32 19 chr11 96113447 96114476 -54669077 + L1ME2 LINE L1 5102 6140 -24 2505 151 164 11 chr11 96114740 96115197 -54668356 + MER1A DNA MER1_type 1 527 0 2935 284 63 57 chr11 96115355 96116870 -54666683 - L2 LINE L2 0 3313 1779 2208 107 6 25 chr11 96117103 96117422 -54666131 - AluSq SINE Alu 0 313 1 183 319 160 35 chr11 96117852 96117996 -54665557 - L2 LINE L2 -246 3026 2865 603 250 19 6 chr11 96118590 96118746 -54664807 - MER103 DNA DNA -1 165 8 593 192 0 0 chr11 96119018 96119117 -54664436 + L1M1 LINE L1 315 413 -7152 270 207 0 0 chr11 96119422 96119480 -54664073 + (TA)n Simple_repeat Simple_repeat 2 59 0 656 278 118 12 chr11 96119685 96119940 -54663613 - MLT1I LTR MaLR -34 375 94 329 335 13 46 chr11 96120065 96120217 -54663336 - MIR3 SINE MIR -4 204 58 266 259 138 0 chr11 96120238 96120354 -54663199 - L1MA10 LINE L1 0 6334 6203 * 14089 160 73 13 chr11 96120352 96122419 -54661134 + L1M1 LINE L1 11 1954 -5611 216 0 0 0 chr11 96122419 96122443 -54661110 + (GA)n Simple_repeat Simple_repeat 1 24 0 14089 160 73 13 chr11 96122443 96124155 -54659398 + L1M1 LINE L1 1954 4377 -3188 233 250 89 0 chr11 96124156 96124212 -54659341 - L1MEc LINE L1 -6299 97 37 530 296 181 35 chr11 96124846 96125217 -54658336 + MLT1H LTR MaLR 123 547 -2 226 342 74 40 chr11 96125614 96125763 -54657790 + L2 LINE L2 2381 2534 -780 197 308 0 0 chr11 96125802 96125854 -54657699 + L2 LINE L2 2703 2754 -560 230 323 103 46 chr11 96125877 96126072 -54657481 + MLT1L LTR MaLR 1 206 -409 * 375 300 148 50 chr11 96126040 96126343 -54657210 + MLT1K LTR MaLR 189 521 -67 225 237 0 0 chr11 96126344 96126403 -54657150 + CT-rich Low_complexity Low_complexity 3 61 0 284 234 80 103 chr11 96126537 96126712 -54656841 - L2 LINE L2 -137 3176 3006 382 274 226 10 chr11 96129726 96129934 -54653619 + MIR SINE MIR 7 259 -3 232 259 0 0 chr11 96129949 96130003 -54653550 + MLT1K LTR MaLR 528 581 -7 6613 119 13 9 chr11 96130003 96131098 -54652455 + L1MA3 LINE L1 5207 6305 0 222 105 0 0 chr11 96132265 96132303 -54651250 + (TG)n Simple_repeat Simple_repeat 1 38 0 602 240 61 56 chr11 96132790 96132986 -54650567 + MIR SINE MIR 50 246 -16 611 316 56 17 chr11 96134022 96134253 -54649300 - MIR SINE MIR -21 241 2 1745 186 24 15 chr11 96135378 96135717 -54647836 + MER2 DNA MER2_type 2 343 -1 212 343 43 119 chr11 96136385 96136595 -54646958 - L2 LINE L2 -96 3176 2983 616 227 101 98 chr11 96136732 96137018 -54646535 + LTR16A LTR ERVL 158 444 -6 195 129 0 0 chr11 96138211 96138242 -54645311 + (TCC)n Simple_repeat Simple_repeat 1 31 0 470 271 22 66 chr11 96138453 96138634 -54644919 - FAM SINE Alu -2 173 1 251 65 0 0 chr11 96138685 96138716 -54644837 - L1PA15 LINE L1 -564 5601 5571 3423 139 13 2 chr11 96138716 96139262 -54644291 + L1PA15 LINE L1 5605 6156 -9 247 377 18 9 chr11 96139328 96139442 -54644111 - L2 LINE L2 -19 3253 3139 571 316 161 26 chr11 96139489 96139955 -54643598 - L2 LINE L2 -541 2773 2245 2148 113 3 0 chr11 96139991 96140293 -54643260 + AluSc SINE Alu 5 307 -2 462 337 97 33 chr11 96140321 96140838 -54642715 - L2 LINE L2 -2065 1249 700 425 271 66 20 chr11 96140966 96141117 -54642436 - MIR SINE MIR 0 262 105 315 150 0 0 chr11 96142374 96142434 -54641119 + (CA)n Simple_repeat Simple_repeat 2 61 0 1479 226 118 0 chr11 96143161 96143542 -54640011 + MSTA LTR MaLR 1 426 -2 4937 112 22 1 chr11 96143728 96144109 -54639444 + L1PB1 LINE L1 5396 5768 -383 297 0 0 0 chr11 96144109 96144142 -54639411 + (CA)n Simple_repeat Simple_repeat 2 34 0 4937 112 22 1 chr11 96144142 96144500 -54639053 + L1PB1 LINE L1 5768 6150 -1 194 33 67 0 chr11 96144590 96144620 -54638933 + T-rich Low_complexity Low_complexity 2 33 0 818 113 24 24 chr11 96144622 96144746 -54638807 - FRAM SINE Alu -30 146 23 394 322 65 1 chr11 96145052 96145218 -54638335 - MIR SINE MIR -63 145 17 1704 151 97 178 chr11 96145398 96146169 -54637384 - LTR8A LTR ERV1 -18 709 1 199 224 41 20 chr11 96146333 96146382 -54637171 - L2 LINE L2 -54 3259 3210 755 292 143 21 chr11 96146645 96147022 -54636531 + L1MCc LINE L1 650 1072 -5351 2451 150 12 104 chr11 96147049 96147556 -54635997 + LTR39 LTR ERV1 3 462 -321 603 81 0 0 chr11 96147556 96147642 -54635911 + (TA)n Simple_repeat Simple_repeat 2 87 0 277 190 82 0 chr11 96148022 96148180 -54635373 + (TG)n Simple_repeat Simple_repeat 1 171 0 * 350 189 27 54 chr11 96148070 96148255 -54635298 + (GTGTG)n Simple_repeat Simple_repeat 1 180 0 2793 212 26 40 chr11 96148365 96149161 -54634392 - L1 LINE L1 -815 6033 5249 7764 255 37 42 chr11 96149180 96151099 -54632454 - L1 LINE L1 -2450 4398 2471 222 0 79 0 chr11 96151099 96151137 -54632416 + T-rich Low_complexity Low_complexity 2 42 0 7764 255 37 42 chr11 96151137 96153632 -54629921 - L1 LINE L1 -4377 2471 8 1615 187 144 3 chr11 96154353 96154728 -54628825 + MSTA LTR MaLR 1 428 0 1827 180 127 69 chr11 96155456 96155756 -54627797 - MLT2B1 LTR ERVL 0 520 180 222 37 0 0 chr11 96155756 96155783 -54627770 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1827 180 127 69 chr11 96155783 96155972 -54627581 - MLT2B1 LTR ERVL -340 180 3 3297 96 7 0 chr11 96156429 96156878 -54626675 + MLT2A2 LTR ERVL 1 452 -1 41893 92 10 6 chr11 96156880 96162511 -54621042 + HERVL-A2 LTR ERVL 2 5654 0 1091 93 0 0 chr11 96162511 96162661 -54620892 + MLT2A2 LTR ERVL 1 150 -303 3332 100 7 0 chr11 96162662 96163112 -54620441 + MLT2A2 LTR ERVL 1 453 0 215 326 159 38 chr11 96163233 96163414 -54620139 + L2 LINE L2 2266 2424 -890 249 33 0 0 chr11 96163414 96163444 -54620109 + (TC)n Simple_repeat Simple_repeat 1 30 0 215 326 159 38 chr11 96163444 96163700 -54619853 + L2 LINE L2 2424 2823 -491 * 225 239 0 99 chr11 96163690 96163761 -54619792 + L2 LINE L2 3249 3312 -1 286 294 0 28 chr11 96164088 96164197 -54619356 + GA-rich Low_complexity Low_complexity 3 108 0 684 230 7 14 chr11 96164366 96164580 -54618973 + FRAM SINE Alu 1 212 0 2121 132 7 0 chr11 96164944 96165254 -54618299 + AluSx SINE Alu 1 312 0 388 276 109 25 chr11 96165865 96166104 -54617449 - HAL1 LINE L1 0 2507 2249 276 143 71 18 chr11 96166160 96166272 -54617281 + (TA)n Simple_repeat Simple_repeat 2 119 0 517 269 122 39 chr11 96166463 96166742 -54616811 - HAL1 LINE L1 -678 1829 1528 258 336 64 13 chr11 96166718 96167016 -54616537 - HAL1 LINE L1 -1228 1279 967 * 1705 163 36 27 chr11 96167086 96167387 -54616166 - AluSx SINE Alu -8 304 1 252 86 0 0 chr11 96167846 96167881 -54615672 + (CA)n Simple_repeat Simple_repeat 2 36 0 189 0 0 0 chr11 96167880 96167901 -54615652 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 835 257 154 43 chr11 96168865 96169487 -54614066 - LTR50 LTR ERVL 0 795 8 208 278 53 71 chr11 96170476 96170645 -54612908 - L2 LINE L2 -2 3311 3146 321 329 12 0 chr11 96170884 96170966 -54612587 - MIR SINE MIR -179 83 1 191 238 100 50 chr11 96171606 96171686 -54611867 - L2 LINE L2 -7 3306 3223 188 338 35 55 chr11 96171682 96171827 -54611726 - L2 LINE L2 -401 2913 2772 * 203 250 54 54 chr11 96173061 96173153 -54610400 + MIR SINE MIR 12 103 -159 1881 246 92 21 chr11 96173154 96173675 -54609878 + MLT1E LTR MaLR 28 585 -8 204 189 0 57 chr11 96173678 96173731 -54609822 + MIR SINE MIR 85 134 -128 277 273 111 0 chr11 96173958 96174057 -54609496 + MER103 DNA DNA 13 122 -44 237 203 29 14 chr11 96174944 96175013 -54608540 - L1ME LINE L1 -259 5862 5793 31 0 0 0 chr11 96175216 96175247 -54608306 + AT_rich Low_complexity Low_complexity 1 31 0 2121 173 36 25 chr11 96175247 96175722 -54607831 - L1MA7 LINE L1 -2 6289 5810 739 135 8 32 chr11 96175754 96175908 -54607645 + L1M2 LINE L1 5654 5802 -498 288 176 28 37 chr11 96175927 96176035 -54607518 + (TA)n Simple_repeat Simple_repeat 2 108 0 22 80 0 0 chr11 96176359 96176409 -54607144 + AT_rich Low_complexity Low_complexity 1 50 0 24 32 0 0 chr11 96176453 96176484 -54607069 + AT_rich Low_complexity Low_complexity 1 31 0 7011 196 29 25 chr11 96176487 96178668 -54604885 - L1MA4 LINE L1 -15 6285 4092 2230 113 13 0 chr11 96178668 96178969 -54604584 - AluSx SINE Alu -7 305 1 7011 196 29 25 chr11 96178969 96179400 -54604153 - L1MA4 LINE L1 -2208 4092 3664 4680 219 35 21 chr11 96179399 96179974 -54603579 + L1 LINE L1 2344 2909 -3237 * 1805 78 0 0 chr11 96179974 96180204 -54603349 + AluY SINE Alu 82 311 0 4680 219 35 21 chr11 96180204 96180905 -54602648 + L1 LINE L1 2909 3638 -2508 2059 137 0 10 chr11 96181112 96181412 -54602141 - AluSx SINE Alu -13 299 3 408 354 86 15 chr11 96181439 96181764 -54601789 + L1ME4a LINE L1 5491 5838 -283 206 240 0 20 chr11 96181853 96181903 -54601650 + MIR SINE MIR 214 262 0 486 0 0 0 chr11 96182079 96182133 -54601420 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 213 224 20 0 chr11 96183441 96183490 -54600063 + (TATG)n Simple_repeat Simple_repeat 3 52 0 315 347 8 8 chr11 96183568 96183689 -54599864 - MIR SINE MIR -136 126 6 2289 123 39 6 chr11 96184117 96184591 -54598962 - L1PB1 LINE L1 -522 5629 5141 3035 140 16 25 chr11 96184598 96185148 -54598405 + L1PB1 LINE L1 5604 6148 -3 210 269 167 0 chr11 96185172 96185250 -54598303 - L2 LINE L2 -2 3311 3221 977 302 79 26 chr11 96185438 96186054 -54597499 - L2 LINE L2 -204 3109 2469 374 282 159 25 chr11 96186425 96186822 -54596731 - L1ME4a LINE L1 -194 5927 5478 214 314 29 73 chr11 96189294 96189431 -54594122 - L2 LINE L2 -4 3309 3179 263 279 63 27 chr11 96189731 96189842 -54593711 + LTR16C LTR ERVL 5 119 -372 26 64 0 0 chr11 96190520 96190567 -54592986 + AT_rich Low_complexity Low_complexity 1 47 0 1690 204 62 16 chr11 96190618 96190991 -54592562 + MER57A LTR ERV1 10 399 -4 1228 205 123 31 chr11 96190999 96191385 -54592168 - MER31A LTR ERV1 -37 444 42 415 305 126 58 chr11 96192362 96192893 -54590660 + L1MEd LINE L1 57 623 -5496 35 0 0 0 chr11 96193188 96193223 -54590330 + AT_rich Low_complexity Low_complexity 1 35 0 1036 251 140 9 chr11 96193299 96193762 -54589791 + L1ME2 LINE L1 5631 6154 -10 194 256 0 0 chr11 96194335 96194374 -54589179 + MIR SINE MIR 112 150 -112 557 278 160 0 chr11 96194399 96194586 -54588967 - MIR SINE MIR -43 219 3 18457 30 0 0 chr11 96195135 96198116 -54585437 + L1PA3 LINE L1 3170 6154 -1 202 260 20 20 chr11 96198379 96198429 -54585124 - MER91C DNA MER1_type -52 88 39 405 325 140 0 chr11 96198443 96198643 -54584910 - MIR SINE MIR -33 229 2 356 0 0 22 chr11 96199294 96199339 -54584214 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 526 16 0 0 chr11 96199339 96199400 -54584153 - L1PA4 LINE L1 -13 6142 6082 201 74 0 0 chr11 96199781 96199808 -54583745 + (CA)n Simple_repeat Simple_repeat 1 27 0 191 234 21 0 chr11 96200279 96200326 -54583227 - L2 LINE L2 -2 3311 3264 690 262 30 0 chr11 96200394 96200558 -54582995 + MER58A DNA MER1_type 40 208 -16 399 344 11 27 chr11 96200597 96200780 -54582773 - L2 LINE L2 -770 2544 2365 762 275 66 43 chr11 96200846 96201099 -54582454 - L1ME LINE L1 -348 5814 5546 2008 138 3 0 chr11 96201099 96201423 -54582130 + AluSx SINE Alu 1 325 0 762 275 66 43 chr11 96201423 96201561 -54581992 - L1ME LINE L1 -616 5546 5413 208 371 86 36 chr11 96202070 96202210 -54581343 + L2 LINE L2 3126 3272 0 921 323 131 9 chr11 96202705 96203501 -54580052 + L2 LINE L2 2435 3313 0 811 173 0 0 chr11 96203562 96203695 -54579858 + FLAM_C SINE Alu 1 133 0 273 29 0 0 chr11 96206077 96206111 -54577442 + (CA)n Simple_repeat Simple_repeat 1 34 0 743 292 29 5 chr11 96206482 96206691 -54576862 + MIR SINE MIR 18 231 -31 348 320 92 67 chr11 96206713 96207103 -54576450 - L2 LINE L2 -45 3268 2869 274 183 127 14 chr11 96208197 96208268 -54575285 - L2 LINE L2 0 3313 3235 455 347 77 50 chr11 96208291 96208628 -54574925 - L2 LINE L2 -9 3263 2918 352 335 19 25 chr11 96208697 96208858 -54574695 - MIR SINE MIR -95 167 8 483 348 165 15 chr11 96208924 96209404 -54574149 - L2 LINE L2 -497 2817 2266 369 338 0 22 chr11 96209505 96209641 -54573912 + MIR3 SINE MIR 62 194 -14 268 254 0 0 chr11 96209810 96209865 -54573688 - L2 LINE L2 -2 3270 3216 521 201 58 71 chr11 96210126 96210280 -54573273 - MER104 DNA Tc2 0 180 29 248 260 73 0 chr11 96211501 96211597 -54571956 + MER103 DNA DNA 13 115 -51 2186 70 3 51 chr11 96211698 96212040 -54571513 + AluY SINE Alu 1 311 0 28 48 0 0 chr11 96212103 96212145 -54571408 + AT_rich Low_complexity Low_complexity 1 42 0 197 264 185 62 chr11 96212915 96213093 -54570460 - MIR SINE MIR -1 261 62 28 61 0 0 chr11 96213633 96213682 -54569871 + AT_rich Low_complexity Low_complexity 1 49 0 671 248 40 62 chr11 96214860 96215086 -54568467 - MER58A DNA MER1_type 0 224 4 272 355 51 0 chr11 96215465 96215603 -54567950 + MIR3 SINE MIR 54 198 -10 2693 252 32 2 chr11 96215618 96216241 -54567312 + MER82 DNA MER2_type 11 652 -1 301 298 36 0 chr11 96216946 96217030 -54566523 - L2 LINE L2 -2 3311 3225 534 280 11 46 chr11 96217052 96217227 -54566326 + MIR SINE MIR 93 261 -1 225 152 0 0 chr11 96218103 96218136 -54565417 + MER82 DNA MER2_type 292 324 -329 380 333 11 23 chr11 96218451 96218628 -54564925 + MER117 DNA MER1_type 13 187 -10 780 282 101 10 chr11 96218971 96219269 -54564284 - MLT1J2 LTR MaLR -125 325 1 586 256 12 6 chr11 96219517 96219681 -54563872 - L1MD2 LINE L1 0 6359 6195 2266 239 124 51 chr11 96219684 96220473 -54563080 - L1MDa LINE L1 -5680 860 14 22 0 0 0 chr11 96220481 96220503 -54563050 + AT_rich Low_complexity Low_complexity 1 22 0 319 342 13 63 chr11 96222601 96222838 -54560715 - L1MC4a LINE L1 -1890 5918 5694 261 244 116 31 chr11 96223004 96223217 -54560336 + MLT1H LTR MaLR 286 521 -28 848 336 10 16 chr11 96223252 96223564 -54559989 - MLT1I LTR MaLR 0 409 100 540 302 58 85 chr11 96223669 96224080 -54559473 - L1MC4a LINE L1 -506 5656 5257 51 31 0 0 chr11 96224231 96224296 -54559257 + AT_rich Low_complexity Low_complexity 1 65 0 421 285 169 24 chr11 96224427 96225107 -54558446 - L1MC4a LINE L1 -1469 4677 3896 1474 192 73 20 chr11 96225170 96225513 -54558040 - MLT1A1 LTR MaLR 0 365 5 262 304 79 59 chr11 96225807 96226198 -54557355 - L1MC4a LINE L1 -3309 2837 2439 339 239 23 11 chr11 96226395 96226483 -54557070 + MIR3 SINE MIR 110 198 -10 22 0 0 0 chr11 96226628 96226650 -54556903 + AT_rich Low_complexity Low_complexity 1 22 0 222 325 24 12 chr11 96227006 96227089 -54556464 - MIR3 SINE MIR -15 193 110 21 36 0 0 chr11 96227261 96227289 -54556264 + AT_rich Low_complexity Low_complexity 1 28 0 655 234 21 42 chr11 96227798 96227990 -54555563 + MER5A DNA MER1_type 1 188 -1 272 340 21 28 chr11 96228269 96228410 -54555143 + L2 LINE L2 3172 3311 -2 456 277 138 6 chr11 96229068 96229227 -54554326 + MIR SINE MIR 36 215 -47 201 377 25 33 chr11 96229625 96229747 -54553806 + L2 LINE L2 2929 3049 -223 395 298 78 0 chr11 96231017 96231158 -54552395 - MIR SINE MIR -55 207 56 338 156 109 0 chr11 96231607 96231671 -54551882 - MER58 DNA MER1_type -67 274 204 830 178 26 78 chr11 96232051 96232242 -54551311 - MER5A DNA MER1_type -3 186 6 241 286 0 0 chr11 96232344 96232414 -54551139 + GA-rich Low_complexity Low_complexity 2 71 0 43 35 0 0 chr11 96232539 96232596 -54550957 + AT_rich Low_complexity Low_complexity 1 57 0 474 301 82 11 chr11 96233031 96233214 -54550339 + MLT1I LTR MaLR 199 394 -15 223 276 191 9 chr11 96233331 96233436 -54550117 + MIR3 SINE MIR 79 202 -6 769 142 19 74 chr11 96233863 96234025 -54549528 - MLT1A1 LTR MaLR -208 157 5 2404 252 78 34 chr11 96234633 96234676 -54548877 - L1ME1 LINE L1 -180 5986 5946 2240 94 0 0 chr11 96234676 96234983 -54548570 - AluSq SINE Alu -6 307 1 2404 252 78 34 chr11 96234983 96235476 -54548077 - L1ME1 LINE L1 -220 5946 5476 2124 134 0 3 chr11 96235476 96235790 -54547763 - AluSq SINE Alu 0 313 1 2404 252 78 34 chr11 96235790 96236779 -54546774 - L1ME1 LINE L1 -690 5476 4377 1570 236 84 10 chr11 96236779 96237173 -54546380 - MSTB LTR MaLR 0 426 4 3105 264 79 8 chr11 96237189 96238445 -54545108 - L1ME1 LINE L1 -1786 4360 3016 218 340 20 30 chr11 96238905 96239005 -54544548 - L3 LINE CR1 -65 1512 1414 303 353 59 15 chr11 96241086 96241222 -54542331 + L1PB3 LINE L1 2 143 -2364 2858 290 69 27 chr11 96241452 96243320 -54540233 + L1PB3 LINE L1 418 3854 -985 1110 168 5 0 chr11 96243326 96243523 -54540030 + L1PB1 LINE L1 3 200 -6663 * 9610 132 40 16 chr11 96243503 96244425 -54539128 + L1PB1 LINE L1 620 1519 -5343 4651 102 34 1 chr11 96244425 96245124 -54538429 - LTR30 LTR ERV1 0 722 1 9610 132 40 16 chr11 96245124 96246837 -54536716 + L1PB1 LINE L1 1519 3458 -3404 2156 141 28 25 chr11 96246837 96247200 -54536353 - THE1B LTR MaLR 0 364 1 9610 132 40 16 chr11 96247200 96247456 -54536097 + L1PB1 LINE L1 3458 3707 -3155 8277 175 6 5 chr11 96247457 96250033 -54533520 + L1PB1 LINE L1 4290 6866 -1 6571 178 34 14 chr11 96250039 96251767 -54531786 + L1PB3 LINE L1 3829 5618 -536 2300 73 7 0 chr11 96251767 96252067 -54531486 - AluY SINE Alu -9 302 1 6571 178 34 14 chr11 96252067 96252613 -54530940 + L1PB3 LINE L1 5618 6152 -2 1035 310 111 29 chr11 96252647 96253470 -54530083 + HAL1 LINE L1 1516 2405 -102 234 128 0 0 chr11 96253711 96253750 -54529803 + (TA)n Simple_repeat Simple_repeat 2 40 0 291 276 81 32 chr11 96253804 96254025 -54529528 - L1ME LINE L1 -254 6662 6431 1484 221 46 3 chr11 96254071 96254356 -54529197 + MER21B LTR ERV1 1 297 -566 371 131 16 0 chr11 96254357 96254418 -54529135 + LTR62 LTR ERVK 1 62 -657 439 230 58 7 chr11 96254456 96254595 -54528958 - MER106B DNA MER1_type 0 1059 914 206 176 20 0 chr11 96254614 96254665 -54528888 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 267 179 54 18 chr11 96254713 96254769 -54528784 - MER106B DNA MER1_type -1001 58 1 240 269 77 39 chr11 96254788 96254892 -54528661 - L1ME LINE L1 -2213 6390 6283 361 167 39 13 chr11 96255430 96255508 -54528045 - MER116 DNA Mariner 0 80 1 238 253 95 42 chr11 96255750 96255845 -54527708 + MIR3 SINE MIR 15 114 -94 310 395 64 0 chr11 96255967 96256076 -54527477 + L2 LINE L2 3134 3249 -23 1560 203 3 20 chr11 96256078 96256379 -54527174 + AluJo SINE Alu 1 296 -16 356 234 6 66 chr11 96256871 96256999 -54526554 - LTR33A LTR ERVL 0 523 417 584 279 79 19 chr11 96257246 96257461 -54526092 - ERVL LTR ERVL -893 4871 4644 1111 315 85 74 chr11 96257606 96258502 -54525051 - ERVL LTR ERVL -1316 4448 3543 562 193 18 9 chr11 96258664 96258778 -54524775 - MLT1C LTR MaLR -2 465 351 1907 275 58 8 chr11 96258784 96259503 -54524050 - L1ME LINE L1 -939 6002 5248 670 224 106 17 chr11 96259516 96259695 -54523858 + MLT1A1 LTR MaLR 171 365 0 479 277 63 21 chr11 96259696 96259940 -54523613 - L1ME LINE L1 -2060 4881 4589 2189 113 0 0 chr11 96259940 96260241 -54523312 + AluSg1 SINE Alu 1 301 -8 479 277 63 21 chr11 96260241 96260327 -54523226 - L1ME LINE L1 -2352 4589 4508 375 259 7 56 chr11 96260361 96260504 -54523049 - L1ME LINE L1 -5081 1342 1207 1681 198 3 16 chr11 96260554 96260867 -54522686 - LTR39 LTR ERV1 0 783 475 432 91 0 0 chr11 96260867 96260933 -54522620 + (TA)n Simple_repeat Simple_repeat 2 67 0 578 273 75 9 chr11 96361999 96362226 -54421327 - L1MC/D LINE L1 -2154 5654 5413 565 120 9 46 chr11 96362227 96362335 -54421218 - FLAM_C SINE Alu -1 142 39 1967 102 7 7 chr11 96363190 96363473 -54420080 + AluSg SINE Alu 28 310 0 1613 209 60 12 chr11 96363480 96363882 -54419671 - MER54A LTR ERVL -90 811 391 216 0 0 0 chr11 96363983 96364007 -54419546 + (A)n Simple_repeat Simple_repeat 1 24 0 1638 148 24 10 chr11 96364408 96364705 -54418848 - AluJb SINE Alu -11 301 1 657 215 16 84 chr11 96364705 96364896 -54418657 + MLT2C2 LTR ERVL 280 457 -7 189 301 165 23 chr11 96365126 96365259 -54418294 + L2 LINE L2 2940 3091 -181 1576 113 13 4 chr11 96365299 96365528 -54418025 - AluSx SINE Alu -73 239 9 756 211 61 19 chr11 96365566 96365782 -54417771 + MER34B LTR ERV1 12 220 -345 286 330 161 0 chr11 96365962 96366080 -54417473 - MIR SINE MIR -104 158 22 1915 139 10 3 chr11 96366446 96366740 -54416813 + AluSg SINE Alu 1 296 -14 789 129 0 50 chr11 96366753 96366893 -54416660 + AluJo/FLAM SINE Alu 1 133 -169 2051 127 7 0 chr11 96366896 96367188 -54416365 + AluSx SINE Alu 1 294 -18 261 136 76 61 chr11 96367188 96367254 -54416299 + L1ME3A LINE L1 6099 6165 -5 1560 168 7 34 chr11 96367415 96367713 -54415840 - AluJb SINE Alu -7 305 16 1905 230 64 18 chr11 96367876 96368485 -54415068 + L1ME2 LINE L1 5522 6158 -6 614 293 73 70 chr11 96368506 96368665 -54414888 + HAL1 LINE L1 1045 1202 -1305 536 212 146 0 chr11 96368665 96368830 -54414723 + MER5A DNA MER1_type 1 189 0 614 293 73 70 chr11 96368830 96368927 -54414626 + HAL1 LINE L1 1202 1297 -1210 2407 67 3 0 chr11 96368927 96369226 -54414327 - AluY SINE Alu -10 301 2 614 293 73 70 chr11 96369226 96369822 -54413731 + HAL1 LINE L1 1297 1900 -607 1996 167 3 3 chr11 96370087 96370441 -54413112 - MER46B DNA MER2_type 0 236 8 291 316 114 0 chr11 96370933 96371047 -54412506 - MIR SINE MIR -56 206 80 184 231 92 31 chr11 96371430 96371495 -54412058 - MIR SINE MIR -23 239 171 * 324 354 35 9 chr11 96371482 96371595 -54411958 - L2 LINE L2 -5 3308 3193 290 354 25 50 chr11 96371627 96371788 -54411765 - MIR SINE MIR -88 174 18 505 356 55 20 chr11 96371894 96372147 -54411406 - MIR SINE MIR 0 262 1 343 182 23 68 chr11 96373252 96373340 -54410213 + MIR3 SINE MIR 112 195 -13 214 333 0 0 chr11 96374192 96374258 -54409295 + (CAG)n Simple_repeat Simple_repeat 2 67 0 341 307 64 26 chr11 96374397 96374590 -54408963 - MIR SINE MIR -29 233 28 458 273 23 0 chr11 96374663 96374791 -54408762 - MIR SINE MIR -84 178 48 275 279 291 11 chr11 96375598 96375777 -54407776 + MIR SINE MIR 34 262 0 236 230 93 50 chr11 96376494 96376633 -54406920 + MIR SINE MIR 80 224 -38 361 396 54 48 chr11 96377108 96377424 -54406129 - L2 LINE L2 -40 3232 2915 240 35 0 0 chr11 96377608 96377637 -54405916 + (CA)n Simple_repeat Simple_repeat 2 30 0 276 0 68 0 chr11 96377958 96378002 -54405551 + (TA)n Simple_repeat Simple_repeat 1 47 0 186 176 59 118 chr11 96378037 96378054 -54405499 + L2 LINE L2 1327 1343 -1971 2148 152 36 14 chr11 96378054 96378410 -54405143 + THE1B LTR MaLR 1 364 0 186 176 59 118 chr11 96378410 96378477 -54405076 + L2 LINE L2 1343 1406 -1908 740 306 96 3 chr11 96378511 96378825 -54404728 + L2 LINE L2 1525 1867 -1447 1027 132 77 0 chr11 96378865 96379047 -54404506 + MER2 DNA MER2_type 2 197 -148 1097 310 232 20 chr11 96379159 96380284 -54403269 + L2 LINE L2 1949 3306 -7 6034 195 27 6 chr11 96380405 96381818 -54401735 + L1MA2 LINE L1 2172 3614 -2532 1151 150 52 0 chr11 96381820 96382045 -54401508 - AluSg/x SINE Alu 0 335 102 644 102 0 0 chr11 96382048 96382136 -54401417 + AluSg/x SINE Alu 213 300 -12 556 167 0 0 chr11 96382151 96382235 -54401318 - AluS SINE Alu -228 84 1 2848 190 14 46 chr11 96382240 96382951 -54400602 + L1MA2 LINE L1 3614 4301 -1845 1657 78 13 0 chr11 96382936 96383167 -54400386 - L1PA13 LINE L1 -281 5882 5649 * 1585 131 22 8 chr11 96383169 96383436 -54400117 + L1PA13 LINE L1 5890 6160 -3 5864 152 39 7 chr11 96383442 96385422 -54398131 + L1MA2 LINE L1 4257 6288 -16 236 160 40 27 chr11 96385444 96385519 -54398034 + (TA)n Simple_repeat Simple_repeat 2 77 0 3244 130 25 4 chr11 96385519 96386244 -54397309 - L1P4 LINE L1 -377 5789 5051 1749 103 0 0 chr11 96386246 96386469 -54397084 - AluSg SINE Alu -20 290 68 331 176 188 0 chr11 96386469 96386554 -54396999 + L1MD2 LINE L1 5944 6044 -315 2346 79 0 19 chr11 96386555 96386871 -54396682 + AluY SINE Alu 1 310 -1 215 213 0 0 chr11 96386993 96387040 -54396513 + GA-rich Low_complexity Low_complexity 2 48 0 1795 205 18 24 chr11 96387172 96387630 -54395923 + MER66-int LTR ERV1 428 882 -5794 234 91 0 0 chr11 96387722 96387755 -54395798 + (A)n Simple_repeat Simple_repeat 1 33 0 590 78 0 0 chr11 96387758 96387835 -54395718 - AluSg SINE Alu -232 77 1 429 232 73 20 chr11 96387856 96388107 -54395446 + L1MC4 LINE L1 7098 7556 -486 225 226 39 108 chr11 96388109 96388211 -54395342 - L1M4 LINE L1 -1785 4361 4267 343 225 8 33 chr11 96388260 96388380 -54395173 - L1M4 LINE L1 -2131 4015 3899 41474 41 6 2 chr11 96388401 96394525 -54389028 + L1PA3 LINE L1 12 6155 0 308 148 37 0 chr11 96394646 96394700 -54388853 - L1MD1 LINE L1 -44 6198 6143 3221 174 118 26 chr11 96394705 96394860 -54388693 - L1MD2 LINE L1 -147 6212 6073 2544 69 0 0 chr11 96394860 96395164 -54388389 - AluY SINE Alu -6 305 2 3221 174 118 26 chr11 96395164 96395869 -54387684 - L1MD2 LINE L1 -286 6073 5272 726 252 90 7 chr11 96395935 96396225 -54387328 - L1ME LINE L1 -463 5707 5394 394 265 33 33 chr11 96396276 96396427 -54387126 - L1ME LINE L1 -890 5256 5106 1644 123 0 0 chr11 96396532 96396776 -54386777 - MLT2A2 LTR ERVL 0 453 210 37 0 0 0 chr11 96397120 96397157 -54386396 + AT_rich Low_complexity Low_complexity 1 37 0 943 272 11 11 chr11 96397228 96397507 -54386046 - L1MC4 LINE L1 -1032 7010 6732 231 274 0 24 chr11 96397557 96397641 -54385912 - L1MC4a LINE L1 -1242 6566 6485 472 323 119 48 chr11 96397920 96398381 -54385172 - L1ME LINE L1 -2275 3871 3378 1049 235 50 32 chr11 96398563 96398963 -54384590 - L1ME1 LINE L1 -4 6162 5756 250 207 73 0 chr11 96398974 96399056 -54384497 - L1ME1 LINE L1 -805 5361 5274 235 362 92 7 chr11 96400037 96400178 -54383375 - L2 LINE L2 -18 3254 3102 186 250 0 23 chr11 96400209 96400253 -54383300 - L2 LINE L2 -238 3034 2992 2080 158 12 47 chr11 96401265 96401572 -54381981 - MLT1B LTR MaLR 0 390 98 1377 181 52 4 chr11 96401572 96401878 -54381675 + AluJb SINE Alu 1 319 0 2080 158 12 47 chr11 96401878 96401973 -54381580 - MLT1B LTR MaLR -292 98 1 204 333 70 62 chr11 96404325 96404454 -54379099 + L2 LINE L2 3127 3256 -16 1910 84 24 11 chr11 96404541 96404926 -54378627 + LTR7 LTR ERV1 1 442 -8 14089 107 6 24 chr11 96404935 96407734 -54375819 + HERVH LTR ERV1 1 2995 -4718 12137 110 14 35 chr11 96407713 96409768 -54373785 + HERVH LTR ERV1 3140 5149 -2564 * 1292 120 19 0 chr11 96409769 96409985 -54373568 + HERVH LTR ERV1 5600 5819 -1894 2222 93 68 0 chr11 96409985 96410350 -54373203 + HERVH LTR ERV1 7324 7713 0 2780 70 92 12 chr11 96410350 96410765 -54372788 + LTR7 LTR ERV1 1 448 -2 652 86 0 11 chr11 96410767 96410860 -54372693 + HERVH LTR ERV1 1 92 -7621 367 148 0 0 chr11 96410860 96410914 -54372639 + LTR7 LTR ERV1 395 448 -2 278 312 28 28 chr11 96411848 96411957 -54371596 + L1ME LINE L1 332 440 -5956 807 208 35 0 chr11 96412146 96412319 -54371234 - MER96B DNA MER1_type? -238 179 1 1345 250 76 42 chr11 96412583 96412973 -54370580 + L1ME LINE L1 792 1213 -5193 2096 129 7 3 chr11 96412973 96413282 -54370271 + AluSp SINE Alu 1 310 -3 1345 250 76 42 chr11 96413282 96413545 -54370008 + L1ME LINE L1 1213 1466 -4940 310 193 45 23 chr11 96414043 96414131 -54369422 + L1MC4 LINE L1 6614 6703 -1339 674 124 10 66 chr11 96414161 96414478 -54369075 + (TA)n Simple_repeat Simple_repeat 1 299 0 311 244 35 12 chr11 96414481 96414567 -54368986 + L1MC4 LINE L1 6616 6703 -1339 22 0 0 0 chr11 96414872 96414894 -54368659 + AT_rich Low_complexity Low_complexity 1 22 0 299 340 84 21 chr11 96415005 96415196 -54368357 + MIR SINE MIR 8 210 -52 245 338 97 60 chr11 96415644 96415913 -54367640 - L2 LINE L2 -87 3185 2907 218 200 160 0 chr11 96416066 96416116 -54367437 + MIR SINE MIR 82 139 -69 867 203 0 6 chr11 96416177 96416335 -54367218 + FAM SINE Alu 9 165 -20 205 191 0 0 chr11 96416996 96417038 -54366515 + T-rich Low_complexity Low_complexity 2 43 0 208 338 139 46 chr11 96417263 96417414 -54366139 - L2 LINE L2 -1 3271 3107 2232 82 0 0 chr11 96417603 96417946 -54365607 + AluY SINE Alu 1 343 0 452 283 106 58 chr11 96418428 96418654 -54364899 + MIR SINE MIR 20 256 -6 282 333 53 0 chr11 96418784 96418898 -54364655 + L2 LINE L2 3111 3230 -42 679 266 83 12 chr11 96420089 96420330 -54363223 + MIR SINE MIR 3 260 -2 308 313 52 0 chr11 96420705 96420801 -54362752 - L2 LINE L2 -8 3305 3205 2838 10 0 0 chr11 96420879 96421188 -54362365 - AluYa5 SINE Alu -2 309 1 407 290 28 28 chr11 96421925 96422032 -54361521 - MIR SINE MIR -86 122 16 788 190 82 0 chr11 96422032 96422190 -54361363 - MER20 DNA MER1_type -1 218 48 273 384 40 0 chr11 96422529 96422680 -54360873 - MIR SINE MIR -84 178 22 2010 138 32 35 chr11 96423513 96423889 -54359664 + THE1C LTR MaLR 1 375 0 341 330 10 0 chr11 96424097 96424197 -54359356 + MIR SINE MIR 32 132 -76 288 218 58 11 chr11 96424312 96424399 -54359154 + L1MC5 LINE L1 7826 7916 -45 2379 124 23 0 chr11 96424974 96425328 -54358225 + THE1B LTR MaLR 2 363 -1 628 260 59 34 chr11 96425653 96425857 -54357696 + MLT1J2 LTR MaLR 5 213 -237 482 269 60 13 chr11 96425888 96426037 -54357516 + MLT1J2 LTR MaLR 281 436 -14 310 370 42 0 chr11 96426218 96426337 -54357216 - L2 LINE L2 -8 3305 3182 380 277 63 44 chr11 96426994 96427153 -54356400 + MIR SINE MIR 51 212 -50 258 385 42 7 chr11 96427992 96428135 -54355418 + MIR SINE MIR 2 149 -113 585 244 112 0 chr11 96428188 96428385 -54355168 - L1ME2 LINE L1 -9 6155 5937 214 275 25 38 chr11 96428401 96428481 -54355072 + MIR SINE MIR 184 262 0 323 255 55 110 chr11 96428693 96428893 -54354660 - MIR SINE MIR -71 191 3 207 333 160 0 chr11 96428915 96429071 -54354482 - MIR SINE MIR -6 256 76 1509 67 72 0 chr11 96429109 96429317 -54354236 + L1PA8 LINE L1 5937 6159 -13 343 282 0 0 chr11 96429317 96429402 -54354151 - L1MC4 LINE L1 -1342 6700 6616 21 0 0 0 chr11 96429408 96429429 -54354124 + AT_rich Low_complexity Low_complexity 1 21 0 4504 131 107 146 chr11 96430273 96431879 -54351674 + pTR5 LTR ERV1 738 2438 0 2912 277 67 63 chr11 96432095 96432644 -54350909 + L1ME1 LINE L1 17 562 -6293 252 0 0 0 chr11 96432644 96432672 -54350881 + (CA)n Simple_repeat Simple_repeat 2 29 0 2912 277 67 63 chr11 96432672 96434001 -54349552 + L1ME1 LINE L1 562 1904 -4951 306 267 138 19 chr11 96434008 96434218 -54349335 + L1ME1 LINE L1 3654 3888 -3053 * 6696 175 40 17 chr11 96434216 96435545 -54348008 + L1MA6 LINE L1 1239 2602 -4065 5018 202 50 20 chr11 96435595 96436998 -54346555 + L1MA6 LINE L1 3041 4508 -3057 1809 191 0 0 chr11 96436998 96437307 -54346246 + AluSx SINE Alu 1 309 -3 5018 202 50 20 chr11 96437307 96437650 -54345903 + L1MA6 LINE L1 4508 4839 -2726 * 5449 184 29 70 chr11 96437646 96438071 -54345482 + L1MA6 LINE L1 5379 5820 -1899 2044 114 22 35 chr11 96438071 96438386 -54345167 + AluSx SINE Alu 1 311 -1 5449 184 29 70 chr11 96438386 96439364 -54344189 + L1MA6 LINE L1 5820 6640 -1079 180 0 0 0 chr11 96439364 96439384 -54344169 + (CAT)n Simple_repeat Simple_repeat 3 22 0 5449 184 29 70 chr11 96439384 96440418 -54343135 + L1MA6 LINE L1 6640 7714 -5 3770 281 52 16 chr11 96440422 96442116 -54341437 + L1ME1 LINE L1 3869 5623 -1318 320 174 0 14 chr11 96442226 96442295 -54341258 + GA-rich Low_complexity Low_complexity 1 68 0 1145 227 106 25 chr11 96442350 96442747 -54340806 + L1ME1 LINE L1 6072 6500 -461 1428 225 54 56 chr11 96442747 96443209 -54340344 - MLT1C LTR MaLR 0 467 7 1337 222 70 21 chr11 96443213 96443600 -54339953 + L1ME1 LINE L1 6494 6899 -62 2149 287 46 7 chr11 96443857 96444675 -54338878 + L2 LINE L2 2308 3156 -157 459 218 52 52 chr11 96444713 96444887 -54338666 + MER104 DNA Tc2 5 178 -2 402 268 16 24 chr11 96444912 96444953 -54338600 + L2 LINE L2 3172 3212 -101 1361 200 31 83 chr11 96444953 96445338 -54338215 + MLT1A1 LTR MaLR 1 365 0 402 268 16 24 chr11 96445338 96445423 -54338130 + L2 LINE L2 3212 3297 -16 309 314 107 16 chr11 96446145 96446266 -54337287 + L2 LINE L2 3136 3267 -5 294 233 68 30 chr11 96446356 96446489 -54337064 - LTR33 LTR ERVL -3 518 381 243 352 0 23 chr11 96446775 96446863 -54336690 - MIR SINE MIR -145 117 32 856 234 21 11 chr11 96447041 96447229 -54336324 + MER58A DNA MER1_type 20 209 -15 574 286 79 11 chr11 96447343 96447521 -54336032 + MIR SINE MIR 2 191 -71 638 146 45 0 chr11 96448700 96448808 -54334745 - MSTA LTR MaLR 0 428 316 1229 239 90 47 chr11 96448808 96449248 -54334305 - MER66A LTR ERV1 0 478 97 1493 204 36 0 chr11 96449319 96449593 -54333960 - MER66A-int LTR ERV1 -3 6673 6390 * 1514 190 41 30 chr11 96449583 96449963 -54333590 - MER66A-int LTR ERV1 -1580 6176 4582 342 262 37 47 chr11 96449991 96450098 -54333455 - MER4D LTR ERV1 -712 160 55 1163 162 10 90 chr11 96450098 96450436 -54333117 - MER66A-int LTR ERV1 -2251 4425 3475 2436 202 9 11 chr11 96450534 96450995 -54332558 - MER66A-int LTR ERV1 -3871 2805 2346 * 7024 199 48 36 chr11 96450993 96453085 -54330468 - MER66A-int LTR ERV1 -4507 2169 1 1031 212 74 91 chr11 96453085 96453540 -54330013 - MER66A LTR ERV1 0 478 96 451 205 16 41 chr11 96453618 96453740 -54329813 - MSTB LTR MaLR -109 317 199 1193 212 4 34 chr11 96453756 96453992 -54329561 - MSTB LTR MaLR -197 229 1 29 47 0 0 chr11 96454025 96454068 -54329485 + AT_rich Low_complexity Low_complexity 1 43 0 795 229 68 7 chr11 96454601 96454826 -54328727 + L1MB8 LINE L1 5886 6127 -51 444 345 55 5 chr11 96454884 96455084 -54328469 + L2 LINE L2 2587 2796 -518 4330 275 167 32 chr11 96455590 96457931 -54325622 + L2 LINE L2 606 3267 -46 204 200 0 0 chr11 96457982 96458042 -54325511 + GA-rich Low_complexity Low_complexity 2 61 0 32 26 0 0 chr11 96458122 96458161 -54325392 + AT_rich Low_complexity Low_complexity 1 39 0 270 27 27 0 chr11 96458284 96458321 -54325232 - L1M1 LINE L1 -522 5780 5743 363 312 129 0 chr11 96459591 96459761 -54323792 + MIR SINE MIR 26 217 -45 202 362 58 14 chr11 96459801 96459939 -54323614 + MIR3 SINE MIR 43 186 -22 48 18 0 0 chr11 96461147 96461202 -54322351 + AT_rich Low_complexity Low_complexity 1 55 0 220 333 21 10 chr11 96461214 96461310 -54322243 - MIR SINE MIR -34 228 132 767 101 18 0 chr11 96461319 96461428 -54322125 + HY1 scRNA scRNA 1 111 -1 479 308 112 14 chr11 96462514 96462862 -54320691 + L1ME4a LINE L1 5517 5898 -223 25 102 0 0 chr11 96463112 96463200 -54320353 + AT_rich Low_complexity Low_complexity 1 88 0 245 242 0 0 chr11 96463349 96463411 -54320142 + MIR SINE MIR 198 259 -3 206 238 139 40 chr11 96463430 96463531 -54320022 - MIR SINE MIR -75 187 77 1259 263 96 5 chr11 96463549 96463975 -54319578 - MLT1J LTR MaLR -46 465 1 235 366 0 0 chr11 96463975 96464057 -54319496 - MIR SINE MIR -149 113 32 576 322 130 31 chr11 96464649 96465003 -54318550 + MLT1J2 LTR MaLR 62 450 0 702 216 23 29 chr11 96465004 96465175 -54318378 + LTR41 LTR ERVL 1 170 -603 468 245 11 133 chr11 96465377 96465663 -54317890 + LTR41 LTR ERVL 510 760 -13 526 271 133 19 chr11 96465780 96465990 -54317563 + MIR SINE MIR 15 248 -14 290 307 0 13 chr11 96467042 96467117 -54316436 - MLT1K LTR MaLR -348 240 167 235 188 94 16 chr11 96467200 96467264 -54316289 + MIR SINE MIR 123 191 -71 697 242 57 13 chr11 96468443 96468670 -54314883 - L1MB8 LINE L1 0 6178 5942 262 236 28 0 chr11 96468772 96468844 -54314709 - MIR SINE MIR -1 261 188 10325 99 8 18 chr11 96468875 96470454 -54313099 - L1P LINE L1 -2922 3224 1662 6960 55 6 6 chr11 96470454 96471855 -54311698 + L1PA7 LINE L1 4731 6146 -8 2222 121 10 0 chr11 96471865 96472172 -54311381 + AluSg SINE Alu 1 310 0 733 187 0 15 chr11 96472186 96472320 -54311233 + AluSq/x SINE Alu 1 132 -180 886 337 58 22 chr11 96472435 96472939 -54310614 - HERV16 LTR ERVL -461 5303 4782 1106 344 53 38 chr11 96473051 96473838 -54309715 - HERV16 LTR ERVL -3655 1341 543 1484 80 0 0 chr11 96473925 96474122 -54309431 + AluSc SINE Alu 103 299 0 204 40 0 0 chr11 96474123 96474148 -54309405 + (TA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr11 96474622 96474645 -54308908 + AT_rich Low_complexity Low_complexity 1 23 0 770 289 89 34 chr11 96475887 96476268 -54307285 + MLT1I LTR MaLR 1 402 -7 215 271 0 0 chr11 96477033 96477092 -54306461 + MIR SINE MIR 110 168 -94 278 341 38 15 chr11 96477794 96477926 -54305627 - MIR SINE MIR -108 154 20 708 261 73 30 chr11 96478983 96479217 -54304336 + MIR SINE MIR 9 252 -10 355 280 29 9 chr11 96479241 96479382 -54304171 - MIR3 SINE MIR -54 154 44 202 264 132 11 chr11 96480216 96480307 -54303246 - MIR SINE MIR -72 190 89 385 299 22 29 chr11 96480444 96480581 -54302972 - MER5B DNA MER1_type -6 172 37 506 100 100 0 chr11 96480589 96480679 -54302874 + L1PA16 LINE L1 6059 6157 -9 22 70 0 0 chr11 96480686 96480729 -54302824 + AT_rich Low_complexity Low_complexity 1 43 0 488 299 66 6 chr11 96481483 96481684 -54301869 - MIR SINE MIR -30 232 21 392 295 16 8 chr11 96482220 96482342 -54301211 - MIR3 SINE MIR -4 204 82 226 272 65 43 chr11 96482544 96482636 -54300917 + L2 LINE L2 3204 3297 -16 340 219 0 0 chr11 96482721 96482785 -54300768 - MIR SINE MIR -127 135 72 2347 74 3 0 chr11 96482901 96483197 -54300356 - AluY SINE Alu -14 297 1 21 0 0 0 chr11 96483358 96483379 -54300174 + AT_rich Low_complexity Low_complexity 1 21 0 558 254 17 40 chr11 96483859 96484032 -54299521 - MIR SINE MIR 0 262 94 202 330 155 10 chr11 96484207 96484401 -54299152 + MIR SINE MIR 1 222 -40 360 286 182 23 chr11 96484434 96484654 -54298899 + L2 LINE L2 2994 3248 -24 2802 34 2 0 chr11 96485519 96485891 -54297662 + L1P LINE L1 5050 5422 -733 249 241 19 0 chr11 96486182 96486236 -54297317 - L2 LINE L2 0 3313 3259 5335 47 0 0 chr11 96486910 96487575 -54295978 - L1P LINE L1 -851 5295 4631 3798 53 6 2 chr11 96487575 96488050 -54295503 + L1PA5 LINE L1 5678 6154 0 470 286 21 47 chr11 96488066 96488258 -54295295 + MIR SINE MIR 58 244 -18 343 348 9 0 chr11 96489460 96489575 -54293978 + MIR SINE MIR 30 145 -63 24 32 0 0 chr11 96490418 96490449 -54293104 + AT_rich Low_complexity Low_complexity 1 31 0 2054 126 0 11 chr11 96490695 96491009 -54292544 + AluSx SINE Alu 1 311 0 22 35 0 0 chr11 96491175 96491204 -54292349 + AT_rich Low_complexity Low_complexity 1 29 0 564 339 112 29 chr11 96491866 96492241 -54291312 + L3 LINE CR1 358 763 -814 354 298 118 0 chr11 96492263 96492441 -54291112 + L1ME LINE L1 5530 5728 -393 229 274 242 0 chr11 96492736 96492860 -54290693 + MLT1J LTR MaLR 27 180 -331 341 260 0 26 chr11 96492906 96492983 -54290570 + 5S rRNA rRNA 2 76 -45 383 212 153 42 chr11 96493041 96493159 -54290394 + MLT1E3 LTR MaLR 1 131 -523 1625 231 5 50 chr11 96493190 96493567 -54289986 + MLT1E3 LTR MaLR 258 617 -7 453 274 85 15 chr11 96493582 96493783 -54289770 + MLT1J LTR MaLR 293 507 -4 2173 128 0 3 chr11 96493791 96494095 -54289458 - AluSp SINE Alu -10 303 1 951 320 60 25 chr11 96494126 96494557 -54288996 + L3 LINE CR1 748 1193 -384 215 254 107 33 chr11 96495189 96495311 -54288242 + MIR3 SINE MIR 49 179 -29 * 1802 271 80 60 chr11 96495255 96495574 -54287979 + L2 LINE L2 2095 2406 -907 2036 134 0 7 chr11 96495574 96495879 -54287674 - AluSx SINE Alu -9 303 1 1802 271 80 60 chr11 96495879 96496769 -54286784 + L2 LINE L2 2406 3313 0 1645 280 136 27 chr11 96498442 96499555 -54283998 + HAL1 LINE L1 684 1917 -590 360 248 119 37 chr11 96499648 96499866 -54283687 + HAL1 LINE L1 2115 2350 -157 702 277 33 0 chr11 96499891 96500075 -54283478 + MIR SINE MIR 37 225 -37 2416 68 0 7 chr11 96500112 96500420 -54283133 - AluY SINE Alu -5 306 1 315 290 110 32 chr11 96500792 96500947 -54282606 + L2 LINE L2 3147 3313 0 235 309 158 33 chr11 96500978 96501142 -54282411 + MER5A DNA MER1_type 1 189 0 257 306 76 32 chr11 96501863 96502020 -54281533 - L2 LINE L2 -166 3106 2943 307 301 66 29 chr11 96502235 96502371 -54281182 - L2 LINE L2 -943 2371 2231 974 145 17 98 chr11 96502563 96502798 -54280755 + MER20 DNA MER1_type 3 218 -1 212 331 70 25 chr11 96503040 96503197 -54280356 + L2 LINE L2 2852 3015 -257 287 336 179 0 chr11 96503585 96503719 -54279834 + MIR SINE MIR 82 239 -23 180 349 123 0 chr11 96504274 96504380 -54279173 + L2 LINE L2 3189 3307 -6 414 353 49 16 chr11 96504441 96504625 -54278928 + MIR SINE MIR 38 227 -35 1002 222 16 0 chr11 96504675 96504864 -54278689 - MER58A DNA MER1_type -23 201 10 606 266 12 24 chr11 96505672 96505841 -54277712 - LTR67 LTR ERVL -389 168 2 2033 94 7 24 chr11 96506485 96506783 -54276770 - AluSg SINE Alu -17 293 1 368 231 128 8 chr11 96507112 96507229 -54276324 + MER94 DNA DNA 2 132 -2 335 259 149 55 chr11 96508429 96508630 -54274923 + L2 LINE L2 3081 3300 -13 192 40 0 0 chr11 96508630 96508655 -54274898 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2383 90 0 3 chr11 96508947 96509257 -54274296 + AluY SINE Alu 1 309 -2 251 342 13 0 chr11 96509999 96510078 -54273475 + L2 LINE L2 3191 3270 -43 306 241 127 0 chr11 96510670 96510749 -54272804 + MIR SINE MIR 156 244 -18 187 242 229 32 chr11 96510772 96510929 -54272624 + MIR SINE MIR 74 261 -1 254 229 80 80 chr11 96511506 96511694 -54271859 + MER3 DNA MER1_type 15 202 -7 * 791 231 5 30 chr11 96511546 96511749 -54271804 - MER3 DNA MER1_type -11 198 1 268 228 41 98 chr11 96511749 96511872 -54271681 - L2 LINE L2 -52 3261 3146 408 293 57 37 chr11 96511965 96512112 -54271441 - MIR SINE MIR -41 167 20 280 331 55 31 chr11 96512208 96512335 -54271218 - L2 LINE L2 -5 3308 3179 180 0 0 0 chr11 96512365 96512385 -54271168 + (TTG)n Simple_repeat Simple_repeat 2 21 0 438 326 59 11 chr11 96512409 96512596 -54270957 + MIR SINE MIR 34 229 -33 234 193 0 0 chr11 96513754 96513811 -54269742 + (TG)n Simple_repeat Simple_repeat 2 58 0 227 270 40 27 chr11 96514137 96514211 -54269342 - L2 LINE L2 -2 3311 3237 348 306 102 25 chr11 96514431 96514588 -54268965 + MIR3 SINE MIR 16 184 -24 210 328 57 85 chr11 96514970 96515147 -54268406 + MER5A DNA MER1_type 17 188 -1 15329 190 31 32 chr11 96515154 96517757 -54265796 + L1PA16 LINE L1 1 2605 -4264 2274 118 0 0 chr11 96517757 96518054 -54265499 + AluSg SINE Alu 1 297 -13 15329 190 31 32 chr11 96518054 96520535 -54263018 + L1PA16 LINE L1 2605 5101 -1768 342 0 0 0 chr11 96520535 96520573 -54262980 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 15329 190 31 32 chr11 96520573 96522341 -54261212 + L1PA16 LINE L1 5101 6869 0 214 352 38 29 chr11 96524241 96524346 -54259207 + L2 LINE L2 2958 3063 -209 23 0 0 0 chr11 96525473 96525496 -54258057 + AT_rich Low_complexity Low_complexity 1 23 0 1949 204 70 46 chr11 96525565 96526125 -54257428 + MER119 DNA MER1_type 8 580 -3 30 27 0 0 chr11 96526434 96526471 -54257082 + AT_rich Low_complexity Low_complexity 1 37 0 366 313 12 100 chr11 96526546 96526805 -54256748 + MIR SINE MIR 1 236 -26 241 323 38 75 chr11 96527289 96527595 -54255958 - L2 LINE L2 -182 3090 2798 365 329 27 27 chr11 96527762 96527911 -54255642 + MIR3 SINE MIR 38 186 -22 271 302 12 12 chr11 96528289 96528375 -54255178 - L2 LINE L2 -5 3308 3223 190 302 87 56 chr11 96528467 96528593 -54254960 - L2 LINE L2 -226 3046 2917 216 333 28 0 chr11 96529492 96529564 -54253989 + MIR SINE MIR 116 189 -73 240 176 40 0 chr11 96530675 96530749 -54252804 + L1ME4a LINE L1 6043 6119 -2 328 259 60 65 chr11 96530804 96531005 -54252548 - L2 LINE L2 -993 2321 2122 196 312 94 71 chr11 96532257 96532427 -54251126 + MIR SINE MIR 33 206 -56 903 208 68 0 chr11 96532461 96532653 -54250900 - MIR SINE MIR 0 262 58 249 283 0 0 chr11 96532750 96532810 -54250743 - MIR SINE MIR -112 150 91 278 212 47 24 chr11 96533448 96533533 -54250020 + MIR SINE MIR 29 115 -147 391 338 50 29 chr11 96534694 96534833 -54248720 - MIR SINE MIR -112 150 9 288 243 121 57 chr11 96535426 96535566 -54247987 - MIR3 SINE MIR 0 208 60 180 228 35 18 chr11 96535577 96535634 -54247919 - MER5C DNA MER1_type -261 63 6 215 213 0 0 chr11 96535852 96535899 -54247654 + GA-rich Low_complexity Low_complexity 2 48 0 231 103 0 0 chr11 96535949 96535988 -54247565 + (A)n Simple_repeat Simple_repeat 1 39 0 21 36 0 0 chr11 96536825 96536853 -54246700 + GC_rich Low_complexity Low_complexity 1 28 0 200 282 30 68 chr11 96537179 96537298 -54246255 + MIR SINE MIR 19 132 -76 599 289 101 5 chr11 96537506 96537714 -54245839 - MIR SINE MIR 0 262 35 234 243 57 79 chr11 96537770 96537910 -54245643 + L2 LINE L2 3133 3269 -44 * 370 295 111 33 chr11 96537898 96538142 -54245411 - L2 LINE L2 -85 3228 2966 435 252 111 30 chr11 96538207 96538342 -54245211 - MIR SINE MIR -71 191 46 292 253 63 21 chr11 96538460 96538538 -54245015 + MIR SINE MIR 79 164 -98 1961 138 3 0 chr11 96538538 96538854 -54244699 + AluSq SINE Alu 1 317 0 292 253 63 21 chr11 96538854 96538869 -54244684 + MIR SINE MIR 164 177 -85 433 214 8 26 chr11 96539539 96539656 -54243897 - MER69A DNA AcHobo -3 174 60 245 297 22 22 chr11 96539918 96540009 -54243544 + MIR3 SINE MIR 111 201 -7 523 162 30 0 chr11 96541189 96541288 -54242265 + MER94 DNA DNA 6 107 -27 477 321 116 0 chr11 96541983 96542173 -54241380 - MIR SINE MIR -48 214 3 553 300 63 34 chr11 96542918 96543155 -54240398 + MIR SINE MIR 1 244 -18 685 306 35 39 chr11 96543160 96543471 -54240082 + L2 LINE L2 2199 2508 -806 613 285 85 38 chr11 96543739 96544257 -54239296 + L1ME4a LINE L1 5328 5865 -256 775 176 8 0 chr11 96545159 96545290 -54238263 + FLAM_A SINE Alu 1 132 -1 232 287 59 0 chr11 96545329 96545430 -54238123 + MLT1J LTR MaLR 403 509 -2 200 35 35 0 chr11 96545799 96545828 -54237725 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 626 261 83 7 chr11 96546096 96546372 -54237181 + L1ME4a LINE L1 5612 5908 -213 265 266 65 61 chr11 96546611 96546730 -54236823 - HAL1 LINE L1 -1153 1354 1237 2427 30 40 7 chr11 96546730 96547031 -54236522 - AluY SINE Alu 0 311 1 265 266 65 61 chr11 96547031 96547174 -54236379 - HAL1 LINE L1 -1270 1237 1091 1992 152 76 15 chr11 96547349 96547692 -54235861 + THE1B LTR MaLR 1 364 0 4015 79 1 111 chr11 96547693 96548416 -54235137 + THE1B-int LTR MaLR 2 645 -935 876 152 76 0 chr11 96548416 96548574 -54234979 + THE1B LTR MaLR 195 364 0 1479 214 10 10 chr11 96549393 96549683 -54233870 - AluJo SINE Alu -18 294 5 299 301 37 2 chr11 96550696 96550832 -54232721 + MIR SINE MIR 49 142 -66 299 300 37 2 chr11 96550991 96551131 -54232422 + MIR SINE MIR 49 142 -66 305 230 82 15 chr11 96551430 96551511 -54232042 + MIR SINE MIR 40 124 -84 191 356 96 0 chr11 96551562 96551666 -54231887 - MIR SINE MIR -94 168 55 1205 136 44 4 chr11 96551687 96551915 -54231638 - L1MA8 LINE L1 -5 6286 6050 811 239 120 0 chr11 96552044 96552253 -54231300 + MIR SINE MIR 29 262 0 2376 68 7 3 chr11 96553238 96553531 -54230022 + AluY SINE Alu 1 294 -17 1243 163 41 132 chr11 96553546 96553865 -54229688 - AluJo SINE Alu -22 290 1 572 74 0 12 chr11 96553885 96553966 -54229587 - MADE1 DNA Mariner 0 80 1 378 0 0 0 chr11 96554030 96554072 -54229481 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 14096 211 29 10 chr11 96554073 96559495 -54224058 - L1PA15 LINE L1 -8 6808 1264 201 192 29 29 chr11 96560221 96560325 -54223228 + GA-rich Low_complexity Low_complexity 2 105 0 373 317 149 23 chr11 96560326 96560547 -54223006 - MIR SINE MIR -10 252 4 225 265 0 0 chr11 96560640 96560689 -54222864 + L2 LINE L2 3265 3313 0 304 318 32 26 chr11 96561542 96561696 -54221857 + MLT1J2 LTR MaLR 17 171 -279 1900 240 33 12 chr11 96562458 96563129 -54220424 - L1 LINE L1 -3423 2959 2281 25 0 0 0 chr11 96563264 96563289 -54220264 + AT_rich Low_complexity Low_complexity 1 25 0 325 111 0 0 chr11 96563294 96563348 -54220205 - L1MA10 LINE L1 -13 6321 6268 836 283 20 40 chr11 96563868 96564172 -54219381 + MLT1J2 LTR MaLR 1 298 -152 1142 310 22 31 chr11 96564173 96564618 -54218935 + L1MEc LINE L1 37 477 -5919 282 262 0 10 chr11 96564643 96564746 -54218807 + L1MA10 LINE L1 6233 6334 0 520 379 0 17 chr11 96565094 96565271 -54218282 + MER91A DNA MER1_type 1 174 -22 25 51 0 0 chr11 96566489 96566528 -54217025 + AT_rich Low_complexity Low_complexity 1 39 0 36 40 0 0 chr11 96567238 96567288 -54216265 + AT_rich Low_complexity Low_complexity 1 50 0 190 405 50 0 chr11 96567330 96567451 -54216102 - L2 LINE L2 -248 3065 2939 696 326 96 17 chr11 96568278 96568622 -54214931 + L2 LINE L2 32 402 -2912 1700 161 38 16 chr11 96569414 96569787 -54213766 - L1MA5 LINE L1 0 6300 5920 537 217 64 13 chr11 96570619 96570776 -54212777 + MLT1J2 LTR MaLR 3 167 -283 26 0 0 0 chr11 96570952 96570978 -54212575 + AT_rich Low_complexity Low_complexity 1 26 0 434 257 57 124 chr11 96571672 96571937 -54211616 - MIR SINE MIR -13 249 3 206 353 139 8 chr11 96571976 96572098 -54211455 + MIR SINE MIR 17 154 -108 1050 194 126 0 chr11 96572661 96572883 -54210670 - MSTA LTR MaLR -178 250 1 9107 174 19 16 chr11 96572883 96574529 -54209024 - MSTA-int LTR MaLR 0 1651 1 2185 146 100 8 chr11 96574531 96574921 -54208632 - MSTA LTR MaLR -2 426 1 21 36 0 0 chr11 96575043 96575071 -54208482 + AT_rich Low_complexity Low_complexity 1 28 0 340 151 0 0 chr11 96575244 96575317 -54208236 + L1PB1 LINE L1 6075 6147 -4 270 254 59 76 chr11 96575414 96575532 -54208021 - L2 LINE L2 -9 3304 3189 22 0 0 0 chr11 96576163 96576185 -54207368 + AT_rich Low_complexity Low_complexity 1 22 0 231 88 0 0 chr11 96576652 96576686 -54206867 + (GA)n Simple_repeat Simple_repeat 1 34 0 1409 204 89 49 chr11 96576714 96576768 -54206785 + MSTB LTR MaLR 1 51 -375 1494 199 29 29 chr11 96576768 96577080 -54206473 + AluJb SINE Alu 1 312 0 1409 204 89 49 chr11 96577080 96577431 -54206122 + MSTB LTR MaLR 51 422 -4 1404 296 99 14 chr11 96578457 96579227 -54204326 - L1M4 LINE L1 -1857 4289 3455 495 287 7 0 chr11 96579317 96579453 -54204100 - AluJb SINE Alu -175 137 1 42181 56 2 4 chr11 96579530 96585700 -54197853 - L1PA4 LINE L1 0 6155 3 1360 178 4 14 chr11 96585706 96585981 -54197572 - LTR24B LTR ERV1 -38 538 267 12797 226 29 28 chr11 96585981 96586347 -54197206 - L1PB4 LINE L1 -21 6837 6473 186 43 0 0 chr11 96586347 96586370 -54197183 + (CATATA)n Simple_repeat Simple_repeat 4 26 0 12797 226 29 28 chr11 96586370 96591730 -54191823 - L1PB4 LINE L1 -385 6473 1070 277 377 26 0 chr11 96591882 96591996 -54191557 - L1PB4 LINE L1 -6062 787 671 383 367 75 27 chr11 96592396 96592584 -54190969 - L1PB4 LINE L1 -6069 780 584 1103 311 31 52 chr11 96592607 96593054 -54190499 - L1PB4 LINE L1 -6399 450 13 477 293 69 16 chr11 96593191 96593379 -54190174 - MIR SINE MIR -62 200 3 355 336 20 7 chr11 96593468 96593614 -54189939 - MIR3 SINE MIR -12 196 49 316 337 99 17 chr11 96594597 96594778 -54188775 - MIR SINE MIR -58 204 9 396 0 0 0 chr11 96595212 96595256 -54188297 + (CA)n Simple_repeat Simple_repeat 1 44 0 246 325 98 98 chr11 96595395 96595801 -54187752 + L2 LINE L2 2845 3250 -22 231 88 0 0 chr11 96595847 96595881 -54187672 + (TGGA)n Simple_repeat Simple_repeat 4 37 0 279 290 28 37 chr11 96596128 96596235 -54187318 + MIR SINE MIR 47 152 -110 354 379 46 18 chr11 96596466 96596685 -54186868 + MIR SINE MIR 8 232 -30 356 172 0 0 chr11 96597773 96597831 -54185722 - L2 LINE L2 0 3272 3215 1926 160 105 25 chr11 96598966 96599367 -54184186 + Tigger2a DNA MER2_type 1 433 -1 256 255 144 20 chr11 96599372 96599525 -54184028 + MIR SINE MIR 20 191 -71 1142 276 64 27 chr11 96600431 96600804 -54182749 - LTR16C LTR ERVL -2 489 103 405 0 0 0 chr11 96601370 96601415 -54182138 + (TG)n Simple_repeat Simple_repeat 2 46 0 41101 66 5 0 chr11 96601831 96607957 -54175596 + L1PA5 LINE L1 1 6154 0 380 300 91 27 chr11 96608559 96608669 -54174884 - MER5A DNA MER1_type -28 161 45 360 306 47 47 chr11 96608724 96608956 -54174597 - MIR SINE MIR -26 236 5 601 246 24 0 chr11 96609296 96609422 -54174131 - MLT1I LTR MaLR -271 138 10 323 311 145 5 chr11 96609448 96609641 -54173912 + MIR SINE MIR 29 248 -14 374 302 158 22 chr11 96609869 96610147 -54173406 - LTR16A LTR ERVL -79 371 56 2121 93 46 0 chr11 96610750 96611030 -54172523 - AluSx SINE Alu -19 293 1 279 330 51 12 chr11 96611669 96611796 -54171757 + MIR SINE MIR 17 143 -65 191 146 24 0 chr11 96612666 96612707 -54170846 + (TA)n Simple_repeat Simple_repeat 2 43 0 304 185 0 0 chr11 96612718 96612772 -54170781 + L1MC4 LINE L1 6653 6706 -1336 330 134 24 37 chr11 96613851 96613933 -54169620 + CT-rich Low_complexity Low_complexity 4 84 0 344 293 61 28 chr11 96613996 96614177 -54169376 - HAL1b LINE L1 -71 1277 1091 2891 238 29 32 chr11 96614205 96615042 -54168511 + L1MC3 LINE L1 6629 7462 -323 * 3971 246 12 50 chr11 96615035 96615958 -54167595 + L1 LINE L1 2150 3107 -3039 601 153 9 18 chr11 96615958 96616069 -54167484 + AluSg/x SINE Alu 194 303 -6 3971 246 12 50 chr11 96616069 96617117 -54166436 + L1 LINE L1 3107 4082 -2064 2570 190 44 3 chr11 96617109 96618065 -54165488 + L1P4 LINE L1 4701 5688 -478 * 1204 184 215 19 chr11 96618114 96618435 -54165118 - MSTA LTR MaLR -4 424 41 239 97 28 28 chr11 96618435 96618507 -54165046 + (TA)n Simple_repeat Simple_repeat 1 72 0 29 0 0 0 chr11 96618508 96618537 -54165016 + AT_rich Low_complexity Low_complexity 1 29 0 19214 178 26 10 chr11 96618538 96625202 -54158351 - L1PA14 LINE L1 -14 7585 770 2104 92 0 3 chr11 96625202 96625484 -54158069 + AluY SINE Alu 16 296 -15 19214 178 26 10 chr11 96625484 96626258 -54157295 - L1PA14 LINE L1 -6829 770 10 351 134 0 12 chr11 96626258 96626321 -54157232 - MSTA LTR MaLR -374 54 1 1500 265 80 8 chr11 96626425 96627085 -54156468 + L1ME1 LINE L1 4006 4713 -1433 18276 162 43 43 chr11 96627092 96629116 -54154437 + L1MA3 LINE L1 5 2028 -5696 1187 131 0 0 chr11 96629116 96629284 -54154269 + AluSg/x SINE Alu 137 304 -8 18276 162 43 43 chr11 96629284 96634790 -54148763 + L1MA3 LINE L1 2028 7717 -7 2633 220 45 55 chr11 96634805 96635921 -54147632 + L1ME1 LINE L1 4695 5787 -379 2192 88 58 0 chr11 96635921 96636215 -54147338 + AluY SINE Alu 1 311 0 2633 220 45 55 chr11 96636215 96636558 -54146995 + L1ME1 LINE L1 5787 6132 -34 216 97 0 0 chr11 96636795 96636826 -54146727 + (CA)n Simple_repeat Simple_repeat 2 32 0 200 238 16 16 chr11 96636827 96636890 -54146663 + A-rich Low_complexity Low_complexity 5 67 0 282 125 0 0 chr11 96637852 96637900 -54145653 + (TTCCC)n Simple_repeat Simple_repeat 5 52 0 236 333 50 0 chr11 96638064 96638163 -54145390 + MIR SINE MIR 133 236 -26 671 266 147 5 chr11 96638228 96638446 -54145107 - MIR SINE MIR -10 252 4 302 188 25 0 chr11 96639189 96639269 -54144284 + (CATATA)n Simple_repeat Simple_repeat 6 87 0 401 127 0 0 chr11 96639495 96639558 -54143995 + L1PB4 LINE L1 5604 5666 -490 1643 177 25 0 chr11 96639560 96639842 -54143711 + AluJo SINE Alu 1 289 -23 731 177 13 44 chr11 96639854 96640012 -54143541 + L1PB4 LINE L1 5999 6151 -5 3572 91 33 2 chr11 96640012 96640529 -54143024 + L1PA13 LINE L1 5628 6162 -1 22 56 0 0 chr11 96640532 96640568 -54142985 + AT_rich Low_complexity Low_complexity 1 36 0 253 325 32 16 chr11 96640934 96641060 -54142493 + L2 LINE L2 2618 2745 -569 295 264 169 27 chr11 96642124 96642272 -54141281 + MIR SINE MIR 32 200 -62 282 289 0 24 chr11 96643079 96643162 -54140391 + MER91A DNA MER1_type 115 195 -1 388 311 184 24 chr11 96643577 96643947 -54139606 - L2 LINE L2 -552 2762 2334 618 247 164 52 chr11 96644007 96644294 -54139259 + MLT1E LTR MaLR 7 325 -268 * 941 212 78 30 chr11 96644290 96644711 -54138842 - LTR56 LTR ERV1 -5 571 29 1612 159 103 15 chr11 96645034 96645373 -54138180 + THE1C LTR MaLR 1 369 -6 265 239 77 34 chr11 96645654 96645771 -54137782 - L1ME LINE L1 -302 5819 5698 23 0 0 0 chr11 96646123 96646146 -54137407 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr11 96646239 96646259 -54137294 + (A)n Simple_repeat Simple_repeat 1 20 0 956 165 82 34 chr11 96648129 96648335 -54135218 - MER20 DNA MER1_type 0 219 4 238 314 42 68 chr11 96648544 96648735 -54134818 - MIR SINE MIR -71 191 6 5704 151 28 30 chr11 96648743 96650209 -54133344 - L1MA4A LINE L1 -11 6292 4814 227 253 275 0 chr11 96651581 96651672 -54131881 + MIR3 SINE MIR 91 206 -2 28 29 0 0 chr11 96651884 96651919 -54131634 + AT_rich Low_complexity Low_complexity 1 35 0 259 256 128 0 chr11 96652132 96652181 -54131372 - MIR SINE MIR -10 252 211 378 0 0 0 chr11 96652181 96652223 -54131330 + (TA)n Simple_repeat Simple_repeat 2 43 0 259 256 128 0 chr11 96652223 96652259 -54131294 - MIR SINE MIR -51 211 156 561 174 0 0 chr11 96652475 96652573 -54130980 + AluJb SINE Alu 133 230 -82 715 7 130 0 chr11 96652660 96652814 -54130739 + GA-rich Low_complexity Low_complexity 3 176 0 311 192 30 10 chr11 96652841 96652940 -54130613 + GA-rich Low_complexity Low_complexity 3 103 0 316 264 9 57 chr11 96652940 96653046 -54130507 - MIR SINE MIR -133 129 29 442 311 99 0 chr11 96654269 96654420 -54129133 + MIR3 SINE MIR 18 183 -25 22 35 0 0 chr11 96654933 96654962 -54128591 + AT_rich Low_complexity Low_complexity 1 29 0 452 230 255 0 chr11 96656066 96656227 -54127326 + MIR SINE MIR 5 206 -56 190 342 50 93 chr11 96656313 96656474 -54127079 + L2 LINE L2 3029 3182 -90 1785 179 0 7 chr11 96656720 96657017 -54126536 - AluJb SINE Alu -17 295 1 224 285 125 28 chr11 96657125 96657269 -54126284 + MIR SINE MIR 79 236 -26 197 323 42 52 chr11 96657289 96657385 -54126168 - MIR SINE MIR -98 110 16 504 210 43 8 chr11 96658011 96658171 -54125382 + MLT1A2 LTR MaLR 1 212 -162 368 257 35 56 chr11 96658315 96658459 -54125094 - MIR3 SINE MIR -28 180 40 230 289 26 79 chr11 96658692 96658806 -54124747 + MIR SINE MIR 16 123 -85 193 255 65 147 chr11 96659289 96659473 -54124080 + MIR3 SINE MIR 16 184 -24 319 328 102 6 chr11 96661574 96661751 -54121802 + MER117 DNA MER1_type 4 197 0 2046 170 46 19 chr11 96662455 96662922 -54120631 + MER51B LTR ERV1 63 377 0 432 118 0 0 chr11 96663105 96663173 -54120380 + (CA)n Simple_repeat Simple_repeat 1 68 0 2538 51 6 10 chr11 96663680 96663991 -54119562 + AluY SINE Alu 1 310 -1 3978 191 42 43 chr11 96664485 96665251 -54118302 - MER21A LTR ERV1 -39 892 126 189 0 0 0 chr11 96665251 96665272 -54118281 + (GA)n Simple_repeat Simple_repeat 2 22 0 3978 191 42 43 chr11 96665272 96665372 -54118181 - MER21A LTR ERV1 -805 126 27 564 303 31 10 chr11 96665478 96665673 -54117880 + MIR SINE MIR 63 261 -1 4254 65 0 26 chr11 96665861 96666152 -54117401 + MER41A LTR ERV1 1 271 -283 2051 149 7 0 chr11 96666152 96666447 -54117106 + AluSx SINE Alu 1 297 -15 4254 65 0 26 chr11 96666447 96666724 -54116829 + MER41A LTR ERV1 271 554 0 3297 176 76 30 chr11 96667621 96668411 -54115142 + LTR1B LTR ERV1 1 826 0 25 31 0 0 chr11 96668738 96668770 -54114783 + AT_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr11 96668893 96668917 -54114636 + (T)n Simple_repeat Simple_repeat 1 24 0 931 126 7 13 chr11 96669174 96669325 -54114228 - LTR8 LTR ERV1 -1 690 541 3321 189 35 18 chr11 96669413 96669788 -54113765 + LTR8A LTR ERV1 1 395 -332 496 51 0 39 chr11 96669788 96669866 -54113687 + (TTTTA)n Simple_repeat Simple_repeat 2 76 0 3321 189 35 18 chr11 96669866 96670204 -54113349 + LTR8A LTR ERV1 395 726 -1 322 171 73 12 chr11 96670715 96670797 -54112756 + L1ME4a LINE L1 5513 5599 -522 315 269 70 64 chr11 96670955 96671111 -54112442 + L1ME4a LINE L1 5803 5959 -162 315 0 0 0 chr11 96671151 96671186 -54112367 + (CA)n Simple_repeat Simple_repeat 1 35 0 398 329 84 12 chr11 96671414 96671581 -54111972 + MER5A DNA MER1_type 9 187 -2 284 333 0 11 chr11 96672382 96672475 -54111078 - MIR3 SINE MIR -5 203 112 1987 157 49 11 chr11 96672933 96673303 -54110250 + MLT1B LTR MaLR 3 386 -4 218 54 0 27 chr11 96674130 96674167 -54109386 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 199 296 68 31 chr11 96674175 96674337 -54109216 - MIR SINE MIR -39 223 56 2036 114 11 4 chr11 96674412 96674693 -54108860 - AluSx SINE Alu -18 294 12 223 273 0 0 chr11 96674860 96674904 -54108649 - MIR SINE MIR -190 72 29 224 333 149 9 chr11 96675066 96675180 -54108373 + MIR3 SINE MIR 77 206 -2 757 250 9 43 chr11 96675186 96675418 -54108135 - MER58A DNA MER1_type 0 224 1 665 185 105 0 chr11 96675451 96675613 -54107940 - MER58A DNA MER1_type 0 224 46 2186 119 0 0 chr11 96675870 96676164 -54107389 - AluSx SINE Alu -18 294 1 510 194 11 0 chr11 96676835 96676928 -54106625 + MER58A DNA MER1_type 43 136 0 487 238 90 16 chr11 96677541 96677663 -54105890 + MIR SINE MIR 20 150 -112 614 257 0 14 chr11 96677664 96677812 -54105741 + FRAM SINE Alu 1 146 -30 267 31 0 0 chr11 96677812 96677844 -54105709 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 186 288 121 0 chr11 96677863 96677929 -54105624 - MIR SINE MIR -28 234 161 2424 84 0 0 chr11 96678306 96678603 -54104950 - AluSx SINE Alu -15 297 1 356 272 55 46 chr11 96679541 96679723 -54103830 + MIR SINE MIR 10 191 -69 1915 143 0 7 chr11 96679960 96680280 -54103273 + AluSp SINE Alu 1 318 0 385 233 130 0 chr11 96680415 96680561 -54102992 + Charlie7 DNA MER1_type 314 478 -2134 641 261 63 19 chr11 96680648 96680966 -54102587 - Charlie7 DNA MER1_type -472 2140 1809 231 307 33 108 chr11 96681728 96681940 -54101613 - L3 LINE CR1 -1 1576 1381 24 53 0 0 chr11 96681993 96682031 -54101522 + AT_rich Low_complexity Low_complexity 1 38 0 283 365 55 0 chr11 96682160 96682305 -54101248 - L2 LINE L2 0 3313 3161 5898 85 28 4 chr11 96682480 96682593 -54100960 - L1PA10 LINE L1 -4 6164 6055 874 63 103 0 chr11 96682593 96682719 -54100834 + MER85 DNA T2_type 1 139 0 5898 85 28 4 chr11 96682719 96683879 -54099674 - L1PA10 LINE L1 -113 6055 4855 10905 126 11 1 chr11 96683880 96685664 -54097889 + L1P LINE L1 3264 5064 -1082 242 156 0 0 chr11 96688380 96688425 -54095128 - MER103 DNA DNA -76 90 46 1780 140 15 0 chr11 96689956 96690228 -54093325 - AluSx SINE Alu -4 308 33 1892 109 92 0 chr11 96690536 96690820 -54092733 + AluSx SINE Alu 1 310 -2 1434 166 115 0 chr11 96691067 96691320 -54092233 - AluSg SINE Alu -16 294 13 25 0 0 0 chr11 96691694 96691719 -54091834 + AT_rich Low_complexity Low_complexity 1 25 0 2031 103 4 0 chr11 96691723 96691984 -54091569 - AluSx SINE Alu -50 262 1 3259 184 87 78 chr11 96692384 96693296 -54090257 - MER21A LTR ERV1 -6 925 6 1524 143 70 44 chr11 96696650 96696923 -54086630 + AluJo SINE Alu 9 288 -24 180 0 0 0 chr11 96697575 96697595 -54085958 + (A)n Simple_repeat Simple_repeat 1 20 0 2267 84 3 3 chr11 96697595 96697894 -54085659 + AluY SINE Alu 1 299 -12 244 270 16 0 chr11 96698167 96698230 -54085323 - L2 LINE L2 -5 3308 3245 25 0 0 0 chr11 96698265 96698290 -54085263 + AT_rich Low_complexity Low_complexity 1 25 0 33 25 0 0 chr11 96698463 96698503 -54085050 + AT_rich Low_complexity Low_complexity 1 40 0 28 0 0 0 chr11 96699266 96699294 -54084259 + AT_rich Low_complexity Low_complexity 1 28 0 323 253 0 12 chr11 96699793 96699876 -54083677 - MIR3 SINE MIR -38 170 89 249 113 264 0 chr11 96700074 96700127 -54083426 - L2 LINE L2 -23 3249 3183 358 394 25 0 chr11 96700750 96700910 -54082643 - MIR3 SINE MIR -29 179 16 704 208 84 121 chr11 96701011 96701217 -54082336 - MER20B DNA MER1_type -62 721 509 3341 144 28 73 chr11 96701217 96701941 -54081612 - LTR8 LTR ERV1 0 691 1 704 208 84 121 chr11 96701941 96702248 -54081305 - MER20B DNA MER1_type -274 509 227 269 136 23 0 chr11 96702270 96702314 -54081239 + MER5A DNA MER1_type 1 45 -144 1360 184 134 28 chr11 96702314 96702701 -54080852 - MSTC LTR MaLR 0 428 1 3743 247 105 25 chr11 96702701 96704223 -54079330 - MSTC-int LTR MaLR 0 1651 2 1728 179 39 60 chr11 96704225 96704662 -54078891 - MSTC LTR MaLR 0 428 1 603 267 34 14 chr11 96704662 96704808 -54078745 + MER5A DNA MER1_type 41 189 0 631 241 16 58 chr11 96704817 96705008 -54078545 + MIR SINE MIR 18 200 -62 230 324 44 0 chr11 96705108 96705176 -54078377 + L2 LINE L2 3242 3312 -1 230 253 22 66 chr11 96705435 96705526 -54078027 - MIR SINE MIR -59 203 117 320 319 53 29 chr11 96705527 96705734 -54077819 - LTR16B LTR ERVL -52 412 201 266 388 46 27 chr11 96706031 96706250 -54077303 + L2 LINE L2 3049 3271 -1 1046 218 94 16 chr11 96706409 96706790 -54076763 - Charlie1 DNA MER1_type 0 2761 2351 384 307 51 2 chr11 96707208 96707357 -54076196 - MIR SINE MIR -18 190 28 287 341 11 0 chr11 96707665 96707756 -54075797 + L2 LINE L2 2542 2633 -681 245 284 42 32 chr11 96707780 96707875 -54075678 + L2 LINE L2 2435 2530 -784 232 298 105 61 chr11 96707883 96708222 -54075331 + L2 LINE L2 2696 3066 -247 3164 146 20 13 chr11 96708255 96708799 -54074754 - MER72 LTR ERV1 0 722 175 544 122 0 0 chr11 96708799 96708881 -54074672 + MER30B DNA MER1_type 1 82 -108 404 76 0 7 chr11 96708881 96709118 -54074435 + AluYa5 SINE Alu 1 301 -9 645 105 0 0 chr11 96709144 96709239 -54074314 + (GAAA)n Simple_repeat Simple_repeat 4 98 0 784 97 0 26 chr11 96709243 96709356 -54074197 + MER30B DNA MER1_type 121 230 0 1042 188 11 0 chr11 96709357 96709538 -54074015 - MER72 LTR ERV1 -539 183 1 412 216 189 9 chr11 96709600 96709711 -54073842 + L2 LINE L2 3176 3306 -7 2075 135 20 0 chr11 96709829 96710133 -54073420 - AluSx SINE Alu -2 310 1 688 253 51 0 chr11 96710723 96710881 -54072672 - FRAM SINE Alu 0 166 1 23 0 0 0 chr11 96711069 96711092 -54072461 + AT_rich Low_complexity Low_complexity 1 23 0 985 221 58 4 chr11 96711322 96711562 -54071991 + MIR SINE MIR 10 262 0 234 230 8 143 chr11 96711788 96711914 -54071639 - L1MC/D LINE L1 -2025 5783 5675 25 90 0 0 chr11 96712098 96712165 -54071388 + AT_rich Low_complexity Low_complexity 1 67 0 23 0 0 0 chr11 96712254 96712277 -54071276 + AT_rich Low_complexity Low_complexity 1 23 0 2233 77 0 14 chr11 96712279 96712604 -54070949 + AluY SINE Alu 1 321 0 681 304 157 31 chr11 96712842 96713589 -54069964 - L1M4 LINE L1 -2926 3220 2380 2249 113 10 0 chr11 96713925 96714225 -54069328 - AluSg SINE Alu -7 303 1 307 369 102 11 chr11 96714235 96714422 -54069131 - MIR SINE MIR 0 262 59 28 48 0 0 chr11 96714542 96714584 -54068969 + AT_rich Low_complexity Low_complexity 1 42 0 225 275 29 0 chr11 96714792 96714861 -54068692 - L2 LINE L2 0 3313 3243 241 368 64 6 chr11 96715997 96716158 -54067395 + MIR SINE MIR 20 188 -74 375 297 51 8 chr11 96716181 96716299 -54067254 - L2 LINE L2 0 3313 3191 427 370 14 9 chr11 96716583 96716802 -54066751 + L1ME LINE L1 5529 5748 -373 29 28 0 0 chr11 96716871 96716907 -54066646 + AT_rich Low_complexity Low_complexity 1 36 0 249 313 25 0 chr11 96716934 96717014 -54066539 - LTR40c LTR ERVL -197 268 187 372 256 202 30 chr11 96717094 96717262 -54066291 - LTR40a LTR ERVL -320 199 3 28 61 0 0 chr11 96717267 96717316 -54066237 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr11 96717698 96717722 -54065831 + AT_rich Low_complexity Low_complexity 1 24 0 284 276 69 103 chr11 96718004 96718081 -54065472 + MIR SINE MIR 69 140 -122 2492 64 0 3 chr11 96718081 96718393 -54065160 + AluY SINE Alu 1 311 0 284 276 69 103 chr11 96718393 96718460 -54065093 + MIR SINE MIR 140 208 -54 199 137 20 20 chr11 96718726 96718777 -54064776 + GA-rich Low_complexity Low_complexity 2 52 0 255 250 86 86 chr11 96719907 96720035 -54063518 + MIR3 SINE MIR 37 164 -44 951 92 0 15 chr11 96720233 96720364 -54063189 + AluY SINE Alu 1 129 -182 664 120 11 33 chr11 96720364 96720548 -54063005 + (TA)n Simple_repeat Simple_repeat 1 180 0 258 280 70 10 chr11 96720583 96720683 -54062870 - MIR SINE MIR -152 110 5 22 0 0 0 chr11 96722257 96722279 -54061274 + AT_rich Low_complexity Low_complexity 1 22 0 2557 43 0 0 chr11 96722354 96722658 -54060895 + AluY SINE Alu 1 304 -7 394 314 62 33 chr11 96722733 96722943 -54060610 + L1MC/D LINE L1 5416 5631 -2177 2222 94 7 0 chr11 96722966 96723254 -54060299 + AluSq SINE Alu 4 293 -20 2166 114 7 0 chr11 96723340 96723638 -54059915 + AluSp SINE Alu 1 300 -13 2278 119 0 0 chr11 96723717 96724029 -54059524 + AluSx SINE Alu 1 312 0 230 272 200 16 chr11 96724954 96725079 -54058474 - MIR SINE MIR -15 247 100 254 28 0 28 chr11 96726009 96726045 -54057508 + (CAT)n Simple_repeat Simple_repeat 2 36 0 325 293 26 0 chr11 96727103 96727219 -54056334 + L1ME4a LINE L1 5279 5397 -749 833 148 0 0 chr11 96727290 96727412 -54056141 + FLAM_A SINE Alu 21 142 0 552 283 73 100 chr11 96727432 96727490 -54056063 + L1ME4a LINE L1 5457 5515 -606 678 209 4 89 chr11 96727490 96727601 -54055952 + MER3 DNA MER1_type 2 86 -123 1488 192 7 31 chr11 96727601 96727887 -54055666 + AluJo SINE Alu 1 279 -33 678 209 4 89 chr11 96727887 96728000 -54055553 + MER3 DNA MER1_type 86 207 -2 552 283 73 100 chr11 96728000 96728470 -54055083 + L1ME4a LINE L1 5515 5924 -197 220 364 88 18 chr11 96729094 96729366 -54054187 + L2 LINE L2 2804 3094 -178 503 382 69 3 chr11 96729798 96730086 -54053467 - L2 LINE L2 -2 3311 3005 23 33 0 0 chr11 96730600 96730630 -54052923 + AT_rich Low_complexity Low_complexity 1 30 0 310 53 0 0 chr11 96730773 96730811 -54052742 + tRNA-Ile-ATT tRNA tRNA 1 38 -39 23 33 0 0 chr11 96731702 96731732 -54051821 + AT_rich Low_complexity Low_complexity 1 30 0 2134 129 10 3 chr11 96731739 96732049 -54051504 + AluSx SINE Alu 1 312 0 318 304 69 44 chr11 96733326 96733530 -54050023 - MIR SINE MIR -17 245 37 665 298 94 8 chr11 96733579 96733814 -54049739 + MIR SINE MIR 8 262 0 413 216 81 0 chr11 96734084 96734195 -54049358 + L1MC4 LINE L1 7121 7240 -802 3285 266 85 50 chr11 96734200 96735517 -54048036 + L1MCc LINE L1 20 1410 -5186 2099 94 0 4 chr11 96735517 96735823 -54047730 + AluY SINE Alu 27 311 0 3285 266 85 50 chr11 96735823 96736131 -54047422 + L1MCc LINE L1 1410 1706 -4890 237 229 16 0 chr11 96736130 96736191 -54047362 + L1M4 LINE L1 4301 4362 -1784 * 1862 301 87 27 chr11 96736415 96737276 -54046277 + L2 LINE L2 1797 2709 -605 498 197 23 0 chr11 96737291 96737423 -54046130 + (TA)n Simple_repeat Simple_repeat 1 135 0 243 310 169 21 chr11 96737423 96737565 -54045988 + L2 LINE L2 2782 2944 -370 445 266 57 28 chr11 96737666 96737843 -54045710 - LTR16A1 LTR ERVL -86 371 190 439 187 63 6 chr11 96738068 96738190 -54045363 - L1MDa LINE L1 -4878 1504 1281 181 406 0 0 chr11 96738264 96738333 -54045220 + L3b LINE CR1 1512 1580 -3 243 286 39 13 chr11 96739819 96739896 -54043657 - LTR67 LTR ERVL -380 177 99 1693 163 16 38 chr11 96740017 96740336 -54043217 + AluJb SINE Alu 1 312 0 271 309 25 0 chr11 96740459 96740540 -54043013 - MIR3 SINE MIR -33 175 93 780 166 96 21 chr11 96741150 96741337 -54042216 - MLT1B LTR MaLR 0 390 190 282 255 59 20 chr11 96741521 96741623 -54041930 + L1MCc LINE L1 2754 2859 -4263 5295 199 23 18 chr11 96741625 96743722 -54039831 + L1MA10 LINE L1 4222 6331 -3 604 294 60 16 chr11 96743720 96744105 -54039448 + L1MCc LINE L1 3868 4269 -2672 * 402 234 147 65 chr11 96744108 96744259 -54039294 - L1M4 LINE L1 -2175 3971 3834 1978 130 34 0 chr11 96744259 96744551 -54039002 - AluSx SINE Alu -10 302 1 402 234 147 65 chr11 96744551 96744753 -54038800 - L1M4 LINE L1 -2312 3834 3589 430 269 75 51 chr11 96744753 96745124 -54038429 + L1MEc LINE L1 1375 1754 -4642 244 271 0 0 chr11 96745137 96745196 -54038357 + (CA)n Simple_repeat Simple_repeat 2 60 0 1598 259 62 41 chr11 96745363 96746455 -54037098 - L1MCc LINE L1 -4891 1532 792 294 227 82 10 chr11 96746529 96746626 -54036927 - L1MCc LINE L1 -5951 472 369 2117 141 3 0 chr11 96746626 96746938 -54036615 + AluSp SINE Alu 1 313 0 355 96 0 0 chr11 96746962 96747014 -54036539 + MER66B LTR ERV1 295 346 -140 1152 270 18 3 chr11 96747043 96747373 -54036180 - L1MCc LINE L1 -6062 361 27 237 192 27 27 chr11 96747376 96747449 -54036104 - L1MC4 LINE L1 -469 7573 7501 1954 219 63 29 chr11 96747454 96747860 -54035693 - L1MC4 LINE L1 -619 7423 6986 1621 96 165 8 chr11 96747860 96748121 -54035432 - AluSq SINE Alu 0 303 2 1954 219 63 29 chr11 96748121 96748345 -54035208 - L1MC4 LINE L1 -1056 6986 6771 21 0 0 0 chr11 96748349 96748370 -54035183 + AT_rich Low_complexity Low_complexity 1 21 0 233 229 0 0 chr11 96748427 96748475 -54035078 + L2 LINE L2 3224 3271 -1 1574 103 0 26 chr11 96749114 96749346 -54034207 + AluSg1 SINE Alu 1 226 -83 225 299 131 28 chr11 96749549 96749656 -54033897 - MIR SINE MIR -113 149 32 241 326 0 11 chr11 96749948 96750037 -54033516 + L2 LINE L2 3017 3104 -168 216 67 0 0 chr11 96750792 96750822 -54032731 + (CA)n Simple_repeat Simple_repeat 2 31 0 202 231 0 0 chr11 96750955 96750994 -54032559 - MER5B DNA MER1_type -123 55 17 260 255 20 41 chr11 96751076 96751174 -54032379 + T-rich Low_complexity Low_complexity 5 100 0 232 386 140 0 chr11 96751899 96752013 -54031540 + L2 LINE L2 3134 3263 -9 2259 124 30 25 chr11 96752123 96752485 -54031068 - THE1B LTR MaLR 0 364 1 11211 106 7 2 chr11 96752485 96754058 -54029495 - THE1B-int LTR MaLR 0 1580 1 2118 124 51 28 chr11 96754060 96754414 -54029139 - THE1B LTR MaLR -2 362 1 26023 30 1 2 chr11 96754438 96758357 -54025196 - L1PA3 LINE L1 -2 6153 2236 285 29 0 0 chr11 96758441 96758475 -54025078 + (TG)n Simple_repeat Simple_repeat 2 35 0 2184 159 41 12 chr11 96758711 96759125 -54024428 + MSTB LTR MaLR 1 426 0 2354 183 88 19 chr11 96759554 96760067 -54023486 - MER44D DNA MER2_type 0 605 3 190 330 120 47 chr11 96760902 96761093 -54022460 - MIR SINE MIR 0 262 58 346 328 73 10 chr11 96762000 96762192 -54021361 - MIR SINE MIR -12 250 47 468 150 0 0 chr11 96762249 96762329 -54021224 + (ATG)n Simple_repeat Simple_repeat 2 81 0 467 317 97 4 chr11 96762337 96762564 -54020989 - MIR SINE MIR -3 259 12 231 36 0 0 chr11 96763837 96763865 -54019688 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 213 379 0 0 chr11 96764049 96764136 -54019417 + MIR3 SINE MIR 108 194 -14 262 335 67 39 chr11 96764224 96764403 -54019150 - L2 LINE L2 -1 3271 3088 2483 155 114 13 chr11 96767299 96767970 -54015583 + L1MCa LINE L1 1508 2339 -4087 189 254 0 0 chr11 96768020 96768075 -54015478 + GA-rich Low_complexity Low_complexity 2 56 0 2610 20 26 0 chr11 96768139 96768442 -54015111 - AluYa5 SINE Alu 0 311 1 1498 108 4 8 chr11 96768710 96768951 -54014602 + L1MA4A LINE L1 6064 6303 0 257 146 85 12 chr11 96769056 96769138 -54014415 + L1MB2 LINE L1 6084 6171 0 3199 177 2 8 chr11 96769250 96769865 -54013688 + L1MCa LINE L1 2390 3000 -3426 23 0 0 0 chr11 96770025 96770048 -54013505 + AT_rich Low_complexity Low_complexity 1 23 0 995 221 58 4 chr11 96770278 96770518 -54013035 + MIR SINE MIR 10 262 0 274 230 15 170 chr11 96770744 96770944 -54012609 - L1ME LINE L1 -336 5785 5617 25 90 0 0 chr11 96771054 96771121 -54012432 + AT_rich Low_complexity Low_complexity 1 67 0 23 0 0 0 chr11 96771210 96771233 -54012320 + AT_rich Low_complexity Low_complexity 1 23 0 2206 77 0 14 chr11 96771235 96771560 -54011993 + AluY SINE Alu 1 321 0 283 288 118 10 chr11 96771798 96772111 -54011442 - L1M4 LINE L1 -2926 3220 2874 24 32 0 0 chr11 96772134 96772165 -54011388 + AT_rich Low_complexity Low_complexity 1 31 0 2190 113 10 0 chr11 96772881 96773181 -54010372 - AluSg SINE Alu -7 303 1 332 374 102 11 chr11 96773191 96773378 -54010175 - MIR SINE MIR 0 262 59 28 48 0 0 chr11 96773498 96773540 -54010013 + AT_rich Low_complexity Low_complexity 1 42 0 231 275 29 0 chr11 96773748 96773817 -54009736 - L2 LINE L2 0 3313 3243 247 368 64 6 chr11 96774953 96775114 -54008439 + MIR SINE MIR 20 188 -74 373 297 51 8 chr11 96775137 96775255 -54008298 - L2 LINE L2 0 3313 3191 276 358 14 10 chr11 96775539 96775746 -54007807 + L1ME LINE L1 5529 5736 -385 29 28 0 0 chr11 96775827 96775863 -54007690 + AT_rich Low_complexity Low_complexity 1 36 0 252 313 25 0 chr11 96775890 96775970 -54007583 - LTR40c LTR ERVL -197 268 187 379 250 208 36 chr11 96776050 96776218 -54007335 - LTR40a LTR ERVL -320 199 3 28 61 0 0 chr11 96776223 96776272 -54007281 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr11 96776654 96776678 -54006875 + AT_rich Low_complexity Low_complexity 1 24 0 309 282 70 84 chr11 96776960 96777037 -54006516 + MIR SINE MIR 69 145 -117 2451 54 0 16 chr11 96777037 96777352 -54006201 + AluY SINE Alu 1 310 -1 309 282 70 84 chr11 96777352 96777416 -54006137 + MIR SINE MIR 145 208 -54 199 137 20 20 chr11 96777682 96777733 -54005820 + GA-rich Low_complexity Low_complexity 2 52 0 5268 127 39 5 chr11 96778601 96779465 -54004088 + L1MA3 LINE L1 5405 6298 -7 2103 211 58 36 chr11 96779480 96780596 -54002957 + L1ME1 LINE L1 4695 5828 -338 2166 88 58 0 chr11 96780596 96780890 -54002663 + AluY SINE Alu 1 311 0 1434 202 35 53 chr11 96831378 96831754 -53951799 - MLT1A2 LTR MaLR -4 370 2 389 275 150 19 chr11 96831787 96831947 -53951606 + L2 LINE L2 2622 2802 -512 207 88 0 0 chr11 96832573 96832607 -53950946 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 349 229 10 83 chr11 96833178 96833274 -53950279 - L2 LINE L2 0 3313 3225 331 149 0 0 chr11 96833326 96833373 -53950180 + Alu SINE Alu 1 47 -261 1214 140 19 33 chr11 96833437 96833651 -53949902 + L1PA16 LINE L1 5956 6166 0 3196 24 0 0 chr11 96833802 96834178 -53949375 + L1P LINE L1 4923 5298 -848 320 179 0 0 chr11 96834543 96834599 -53948954 - AluSq SINE Alu 0 301 246 1673 117 0 0 chr11 96834600 96834822 -53948731 - AluSq SINE Alu -91 222 1 768 261 8 62 chr11 96834822 96834874 -53948679 - L2 LINE L2 -599 2715 2662 2566 58 0 0 chr11 96834874 96835183 -53948370 - AluY SINE Alu -2 309 1 768 261 8 62 chr11 96835183 96835371 -53948182 - L2 LINE L2 -652 2662 2488 309 328 73 10 chr11 96836228 96836420 -53947133 - MIR SINE MIR -12 250 47 468 150 0 0 chr11 96836477 96836557 -53946996 + (ATG)n Simple_repeat Simple_repeat 2 81 0 430 317 97 4 chr11 96836565 96836792 -53946761 - MIR SINE MIR -3 259 12 231 36 0 0 chr11 96838065 96838093 -53945460 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 192 379 0 0 chr11 96838277 96838364 -53945189 + MIR3 SINE MIR 108 194 -14 260 341 67 39 chr11 96838452 96838631 -53944922 - L2 LINE L2 -1 3271 3088 354 23 0 0 chr11 96841792 96841835 -53941718 + (TG)n Simple_repeat Simple_repeat 2 44 0 264 59 0 0 chr11 96842529 96842563 -53940990 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 551 319 96 16 chr11 96842916 96843280 -53940273 + MLT1I LTR MaLR 9 401 -8 240 86 0 0 chr11 96844810 96844845 -53938708 + (CAT)n Simple_repeat Simple_repeat 1 35 0 239 226 0 0 chr11 96845043 96845096 -53938457 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 1676 188 12 81 chr11 96845215 96845294 -53938259 - MLT1B LTR MaLR 0 390 307 2228 130 0 0 chr11 96845294 96845602 -53937951 - AluSq SINE Alu -5 308 1 1676 188 12 81 chr11 96845602 96845932 -53937621 - MLT1B LTR MaLR -83 307 9 219 149 43 21 chr11 96846280 96846327 -53937226 + CT-rich Low_complexity Low_complexity 1 48 0 388 323 37 6 chr11 96846620 96846784 -53936769 - MARNA DNA Mariner -6 580 412 2370 98 0 0 chr11 96847104 96847411 -53936142 - AluSc SINE Alu -2 307 1 6570 68 11 0 chr11 96847542 96848372 -53935181 - L1PA8 LINE L1 0 6172 5334 198 310 186 18 chr11 96849248 96849361 -53934192 + L2 LINE L2 3141 3272 0 223 163 0 0 chr11 96849361 96849404 -53934149 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 259 132 189 0 chr11 96850805 96850858 -53932695 - MER5B DNA MER1_type -5 173 111 347 279 146 6 chr11 96851030 96851188 -53932365 - MER5A DNA MER1_type -1 188 9 367 240 130 52 chr11 96851248 96851440 -53932113 + MIR SINE MIR 31 237 -25 459 259 18 71 chr11 96851670 96851752 -53931801 - L2 LINE L2 -1 3312 3242 2177 223 102 74 chr11 96851752 96852259 -53931294 + MER63C DNA MER1_type 1 545 -515 2415 65 0 0 chr11 96852259 96852553 -53931000 + AluY SINE Alu 1 294 -17 2177 223 102 74 chr11 96852553 96852947 -53930606 + MER63C DNA MER1_type 545 927 -3 459 259 18 71 chr11 96852947 96853034 -53930519 - L2 LINE L2 -71 3242 3152 1206 225 36 71 chr11 96853068 96853603 -53929950 + MLT1E3 LTR MaLR 1 622 -2 207 263 70 0 chr11 96854029 96854086 -53929467 - L2 LINE L2 -10 3262 3202 406 295 62 0 chr11 96854187 96854299 -53929254 + MIR SINE MIR 61 179 -83 825 194 0 14 chr11 96854299 96854438 -53929115 + FLAM_C SINE Alu 2 138 -5 192 77 0 0 chr11 96854701 96854727 -53928826 + (CA)n Simple_repeat Simple_repeat 2 27 0 271 231 182 14 chr11 96854891 96855034 -53928519 + L1ME4a LINE L1 5955 6121 0 183 80 0 0 chr11 96857526 96857551 -53926002 + (TTG)n Simple_repeat Simple_repeat 2 26 0 336 24 0 0 chr11 96857691 96857732 -53925821 + (TG)n Simple_repeat Simple_repeat 2 42 0 2048 120 10 10 chr11 96858152 96858478 -53925075 + AluSx SINE Alu 1 312 0 361 301 169 6 chr11 96858584 96858750 -53924803 - MIR SINE MIR -7 255 63 1948 211 1 3 chr11 96858919 96859281 -53924272 - MLT1A1 LTR MaLR -2 394 1 1412 220 26 66 chr11 96859756 96860133 -53923420 - MLT1A1 LTR MaLR 0 365 4 260 288 135 47 chr11 96860230 96860400 -53923153 - L2 LINE L2 -22 3291 3107 354 264 55 9 chr11 96860912 96861022 -53922531 - MLT1H1 LTR MaLR 0 555 441 25 51 0 0 chr11 96861563 96861602 -53921951 + AT_rich Low_complexity Low_complexity 1 39 0 1280 301 67 10 chr11 96861780 96862261 -53921292 + MER69 DNA AcHobo 8 515 -711 558 184 80 30 chr11 96862271 96862472 -53921081 + MER69 DNA AcHobo 2309 2519 -7 1290 205 9 113 chr11 96862686 96863023 -53920530 + AluJo SINE Alu 1 302 0 192 77 0 0 chr11 96863036 96863062 -53920491 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 319 203 0 0 chr11 96864388 96864447 -53919106 + MLT1K LTR MaLR 512 570 -18 654 234 53 18 chr11 96864516 96864687 -53918866 + MER5A DNA MER1_type 6 182 -7 195 284 149 0 chr11 96864698 96864772 -53918781 - MER5A DNA MER1_type -104 85 1 2034 113 34 0 chr11 96864975 96865268 -53918285 + AluSx SINE Alu 2 304 -8 964 212 28 18 chr11 96865859 96866076 -53917477 - MER20 DNA MER1_type 0 219 1 211 306 48 81 chr11 96866637 96866761 -53916792 + MER5A DNA MER1_type 64 183 -6 3650 127 49 52 chr11 96867075 96867691 -53915862 - LTR18B LTR ERVL 0 614 1 3930 164 55 74 chr11 96867871 96868656 -53914897 - HERVL18 LTR ERVL -2557 3490 2721 672 179 14 19 chr11 96868657 96868882 -53914671 - HERVL18 LTR ERVL -3596 2451 2119 * 1047 198 17 16 chr11 96868881 96869240 -53914313 - HERVL18 LTR ERVL -4237 1810 1388 826 229 16 22 chr11 96869258 96869441 -53914112 - HERVL18 LTR ERVL -5374 673 492 * 1213 238 35 21 chr11 96869423 96869705 -53913848 - HERVL18 LTR ERVL -5743 304 19 3309 159 78 14 chr11 96869727 96870304 -53913249 - LTR18B LTR ERVL 0 614 1 2678 164 27 9 chr11 96870474 96870924 -53912629 - LTR32 LTR ERVL 0 471 14 198 0 0 0 chr11 96871274 96871296 -53912257 + (A)n Simple_repeat Simple_repeat 1 22 0 23 33 0 0 chr11 96872013 96872043 -53911510 + AT_rich Low_complexity Low_complexity 1 30 0 455 287 85 6 chr11 96872051 96872215 -53911338 + MIR SINE MIR 73 249 -13 2078 295 101 48 chr11 96872339 96872433 -53911120 + HAL1 LINE L1 436 524 -1983 2339 165 39 7 chr11 96872433 96872846 -53910707 - MSTB LTR MaLR 0 426 1 2078 295 101 48 chr11 96872846 96873494 -53910059 + HAL1 LINE L1 524 1136 -1371 2206 106 0 3 chr11 96873494 96873806 -53909747 + AluY SINE Alu 1 311 0 2078 295 101 48 chr11 96873806 96874828 -53908725 + HAL1 LINE L1 1136 2294 -213 3065 245 98 10 chr11 96874940 96876336 -53907217 - L1MC/D LINE L1 -744 5662 4359 404 211 142 0 chr11 96876344 96876548 -53907005 - L1MC/D LINE L1 -5197 1212 980 414 0 0 0 chr11 96876998 96877044 -53906509 + (TA)n Simple_repeat Simple_repeat 1 46 0 6671 60 23 0 chr11 96877044 96877899 -53905654 - L1PA7 LINE L1 -24 6130 5256 339 358 64 64 chr11 96878113 96878487 -53905066 - L2 LINE L2 -72 3200 2827 329 419 35 4 chr11 96878837 96879095 -53904458 - L2 LINE L2 -494 2820 2555 1311 161 9 0 chr11 96879102 96879319 -53904234 + L1PB4 LINE L1 5925 6143 -13 290 224 56 37 chr11 96880864 96880971 -53902582 - MIR SINE MIR -68 140 32 1329 116 39 0 chr11 96880973 96881180 -53902373 - L1PA15 LINE L1 -3 6162 5948 322 308 80 46 chr11 96881272 96881509 -53902044 + MIR SINE MIR 18 262 0 318 254 0 0 chr11 96882390 96882456 -53901097 + MLT1D LTR MaLR 1 66 -439 371 176 10 0 chr11 96882456 96882524 -53901029 + MLT2D LTR ERVL 1 56 -358 397 120 160 0 chr11 96882530 96882605 -53900948 + MLT1D LTR MaLR 419 505 0 3594 205 44 153 chr11 96882605 96883740 -53899813 + MLT1D-int LTR MaLR 1 1258 -113 3286 100 18 0 chr11 96883740 96884154 -53899399 + LTR46 LTR ERV1 1 425 -35 405 0 0 0 chr11 96884154 96884199 -53899354 + (TG)n Simple_repeat Simple_repeat 2 46 0 3286 100 18 0 chr11 96884199 96884236 -53899317 + LTR46 LTR ERV1 425 460 0 3594 205 44 153 chr11 96884236 96884400 -53899153 + MLT1D-int LTR MaLR 1258 1438 67 5370 123 18 21 chr11 96884400 96884455 -53899098 + L1MA3 LINE L1 5413 5467 -838 2571 37 0 3 chr11 96884455 96884755 -53898798 - AluY SINE Alu -12 299 1 5370 123 18 21 chr11 96884755 96885410 -53898143 + L1MA3 LINE L1 5467 6122 -183 2346 65 10 0 chr11 96885410 96885703 -53897850 - AluY SINE Alu -15 296 1 5370 123 18 21 chr11 96885703 96885887 -53897666 + L1MA3 LINE L1 6122 6305 0 3594 205 44 153 chr11 96885887 96886125 -53897428 + MLT1D-int LTR MaLR 1437 1371 0 2208 209 50 2 chr11 96886125 96886607 -53896946 + MLT1D LTR MaLR 1 505 0 384 314 90 38 chr11 96887724 96888010 -53895543 + L1MEd LINE L1 924 1300 -1190 788 300 112 38 chr11 96889056 96890014 -53893539 + L1ME3A LINE L1 4882 5917 -253 941 295 134 22 chr11 96890239 96890687 -53892866 + MLT1G1 LTR MaLR 8 505 -90 334 200 12 12 chr11 96890816 96890896 -53892657 + MLT1G1 LTR MaLR 506 585 -5 303 243 86 71 chr11 96890901 96891041 -53892512 + MLT1G1-int LTR MaLR 1 142 -1229 352 380 18 5 chr11 96891047 96891271 -53892282 + MLT1G1-int LTR MaLR 295 521 -850 683 139 35 23 chr11 96891684 96891856 -53891697 + CT-rich Low_complexity Low_complexity 5 178 0 336 230 73 137 chr11 96892166 96892414 -53891139 + MLT1G1-int LTR MaLR 1107 1338 -33 316 297 88 0 chr11 96892442 96892533 -53891020 + MLT1G3 LTR MaLR 1 99 -496 1220 252 76 31 chr11 96892566 96892993 -53890560 + MLT1G3 LTR MaLR 109 561 -4 42128 58 3 1 chr11 96893402 96899536 -53884017 - L1PA4 LINE L1 -1 6154 9 788 177 0 0 chr11 96899793 96899934 -53883619 - L1MA2 LINE L1 0 6304 6164 259 315 62 8 chr11 96900602 96900732 -53882821 - L2 LINE L2 -135 3178 3042 22 56 0 0 chr11 96901904 96901940 -53881613 + AT_rich Low_complexity Low_complexity 1 36 0 344 64 0 0 chr11 96901945 96901992 -53881561 + L1MA4 LINE L1 6218 6264 -36 5436 160 41 9 chr11 96902010 96903497 -53880056 - L1MA4 LINE L1 -24 6276 4748 371 304 0 48 chr11 96903938 96904106 -53879447 + L2 LINE L2 3131 3290 -23 1302 206 26 29 chr11 96904397 96904708 -53878845 - AluJb SINE Alu -2 310 1 1412 127 84 4 chr11 96904991 96905228 -53878325 - Tigger2 DNA MER2_type 0 2718 2463 4018 170 26 11 chr11 96905288 96906030 -53877523 - Tigger2 DNA MER2_type -1965 753 1 984 89 30 0 chr11 96906275 96906443 -53877110 + Tigger2 DNA MER2_type 2463 2635 -83 2004 192 16 16 chr11 96906447 96906832 -53876721 + MLT2B1 LTR ERVL 48 432 -88 278 204 10 0 chr11 96906848 96906946 -53876607 + (TA)n Simple_repeat Simple_repeat 2 100 0 212 213 37 6 chr11 96907002 96907166 -53876387 + (TA)n Simple_repeat Simple_repeat 1 169 0 1084 174 68 51 chr11 96907226 96907461 -53876092 + AluJo SINE Alu 1 239 -73 1275 164 5 0 chr11 96907662 96907870 -53875683 + MER2 DNA MER2_type 1 209 -136 534 126 115 0 chr11 96908398 96908485 -53875068 - Tigger7 DNA MER2_type 0 2487 2391 * 812 191 63 26 chr11 96908484 96908673 -53874880 - Tigger7 DNA MER2_type -284 266 71 355 229 48 24 chr11 96908731 96908814 -53874739 - Tigger7 DNA MER2_type -620 85 1 357 319 69 9 chr11 96908878 96908994 -53874559 - MIR SINE MIR -66 142 20 202 333 101 30 chr11 96909877 96909976 -53873577 - MIR SINE MIR -155 107 2 204 368 15 0 chr11 96910627 96910695 -53872858 - MIR3 SINE MIR -43 165 97 575 288 71 42 chr11 96911905 96912145 -53871408 + MIR SINE MIR 14 260 -2 233 265 0 0 chr11 96912348 96912397 -53871156 + (CA)n Simple_repeat Simple_repeat 2 50 0 181 367 71 0 chr11 96912397 96912495 -53871058 - MIR SINE MIR -111 151 47 348 310 53 9 chr11 96912642 96912755 -53870798 - MIR SINE MIR -18 244 127 848 207 201 19 chr11 96912966 96913275 -53870278 + L1ME3A LINE L1 5801 6165 -5 464 198 77 0 chr11 96913646 96913737 -53869816 - MLT1A1 LTR MaLR -265 100 3 1157 243 16 4 chr11 96914397 96914648 -53868905 + MLT1A1 LTR MaLR 112 365 0 547 265 39 17 chr11 96916436 96916617 -53866936 + MIR SINE MIR 74 258 -4 288 313 0 52 chr11 96916629 96916744 -53866809 - MIR SINE MIR -66 196 88 410 275 135 39 chr11 96917278 96917507 -53866046 + MIR SINE MIR 12 262 0 215 395 18 18 chr11 96917575 96917684 -53865869 + L2 LINE L2 2415 2523 -791 464 197 69 150 chr11 96918705 96918938 -53864615 - MIR SINE MIR -24 238 25 281 219 31 0 chr11 96919025 96919089 -53864464 + MER94 DNA DNA 10 75 -59 205 302 0 0 chr11 96919138 96919191 -53864362 + MER5B DNA MER1_type 125 177 -1 252 346 109 0 chr11 96919237 96919338 -53864215 - L2 LINE L2 -1 3312 3201 396 333 18 0 chr11 96919709 96919823 -53863730 + L2 LINE L2 3137 3252 -20 246 32 0 0 chr11 96919831 96919862 -53863691 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 636 231 40 61 chr11 96920218 96920550 -53863003 - L1PA15-16 LINE L1 -5248 955 692 330 337 24 37 chr11 96920546 96920843 -53862710 - L1PA15-16 LINE L1 -5329 1879 1381 * 900 283 76 33 chr11 96921243 96921611 -53861942 - L1M2 LINE L1 -6464 385 2 307 73 36 0 chr11 96921689 96921744 -53861809 + (TG)n Simple_repeat Simple_repeat 2 58 0 273 261 76 0 chr11 96922360 96922452 -53861101 + MIR SINE MIR 43 141 -121 472 258 138 79 chr11 96922463 96922703 -53860850 - MLT1J LTR MaLR 0 511 258 193 354 0 10 chr11 96922813 96922909 -53860644 + MIR SINE MIR 168 262 0 188 264 11 115 chr11 96923565 96923652 -53859901 + MER5A DNA MER1_type 88 165 -24 1588 206 14 0 chr11 96923700 96923996 -53859557 - AluJo SINE Alu -12 300 1 999 239 53 38 chr11 96924827 96925091 -53858462 - L2 LINE L2 -513 2801 2534 3466 138 73 16 chr11 96925099 96925739 -53857814 - L1MA6 LINE L1 -7 6293 5617 6578 187 33 2 chr11 96925739 96927113 -53856440 + L1 LINE L1 2885 4300 -1846 342 346 12 24 chr11 96927320 96927510 -53856043 - MIR SINE MIR -59 149 18 2374 85 0 0 chr11 96928272 96928606 -53854947 + AluSg SINE Alu 1 334 0 2357 119 114 5 chr11 96929938 96930323 -53853230 + MSTA LTR MaLR 2 428 0 514 276 136 9 chr11 96930599 96930820 -53852733 + LTR33 LTR ERVL 254 502 -19 221 354 176 15 chr11 96930831 96931504 -53852049 + L2 LINE L2 2259 3051 -221 483 164 23 0 chr11 96932364 96932492 -53851061 + (TA)n Simple_repeat Simple_repeat 1 131 0 27 0 0 0 chr11 96932560 96932587 -53850966 + AT_rich Low_complexity Low_complexity 1 27 0 2354 129 42 42 chr11 96932655 96933113 -53850440 + L1MB1 LINE L1 5711 6168 0 297 135 0 0 chr11 96933709 96933761 -53849792 + (CTA)n Simple_repeat Simple_repeat 1 52 0 839 310 111 58 chr11 96934000 96934914 -53848639 - L1M4 LINE L1 -2036 4110 3149 6975 60 0 0 chr11 96935122 96936298 -53847255 - L1PA4 LINE L1 0 6155 4979 1545 220 41 44 chr11 96936513 96936926 -53846627 + MLT1C LTR MaLR 54 465 -2 192 332 66 83 chr11 96937721 96938278 -53845275 + L2 LINE L2 2301 2848 -466 21 36 0 0 chr11 96940119 96940147 -53843406 + AT_rich Low_complexity Low_complexity 1 28 0 2310 103 7 0 chr11 96940698 96940999 -53842554 - AluSq SINE Alu -10 303 1 207 0 0 0 chr11 96941387 96941410 -53842143 + (A)n Simple_repeat Simple_repeat 1 23 0 840 159 140 0 chr11 96941553 96941710 -53841843 - AluSq SINE Alu -1 312 134 2305 82 3 3 chr11 96941710 96942015 -53841538 - AluY SINE Alu -6 305 1 1349 191 90 4 chr11 96942374 96942641 -53840912 - AluJo SINE Alu -22 290 1 291 296 111 26 chr11 96942744 96942908 -53840645 - MIR3 SINE MIR -53 155 10 494 184 73 9 chr11 96943331 96943440 -53840113 - AluSg/x SINE Alu -10 302 187 2410 78 0 7 chr11 96943982 96944290 -53839263 - AluSx SINE Alu -6 306 1 2040 121 14 0 chr11 96944493 96944783 -53838770 - AluSx SINE Alu -13 299 6 341 339 128 0 chr11 96945511 96945691 -53837862 - MIR SINE MIR -53 209 7 502 259 82 3 chr11 96945898 96946187 -53837366 - L1ME LINE L1 -629 5929 5621 425 287 102 51 chr11 96946228 96946562 -53836991 - L1ME LINE L1 -4169 2552 2202 536 288 24 40 chr11 96946601 96946914 -53836639 - L1MEc LINE L1 -4471 2109 1772 347 92 104 12 chr11 96946967 96947131 -53836422 + (TA)n Simple_repeat Simple_repeat 1 179 0 567 123 69 7 chr11 96947155 96947440 -53836113 + (TA)n Simple_repeat Simple_repeat 1 302 0 322 321 9 0 chr11 96949049 96949155 -53834398 - MIR SINE MIR -34 228 122 191 266 138 32 chr11 96950480 96950574 -53832979 + MIR SINE MIR 50 153 -109 29 28 0 0 chr11 96950581 96950617 -53832936 + AT_rich Low_complexity Low_complexity 1 36 0 2250 286 79 38 chr11 96950745 96951890 -53831663 - L2 LINE L2 0 3313 2118 21 0 0 0 chr11 96951969 96951990 -53831563 + AT_rich Low_complexity Low_complexity 1 21 0 1667 98 126 20 chr11 96952342 96952632 -53830921 + AluY SINE Alu 1 317 0 493 345 0 12 chr11 96952807 96952978 -53830575 - MIR SINE MIR -86 176 8 225 254 17 0 chr11 96953510 96953569 -53829984 + CT-rich Low_complexity Low_complexity 3 62 0 2396 114 114 5 chr11 96954681 96955066 -53828487 + MSTA LTR MaLR 2 428 0 492 281 136 9 chr11 96955342 96955563 -53827990 + LTR33 LTR ERVL 254 502 -19 221 354 176 15 chr11 96955574 96956247 -53827306 + L2 LINE L2 2259 3051 -221 471 164 23 0 chr11 96957107 96957235 -53826318 + (TA)n Simple_repeat Simple_repeat 2 132 0 27 0 0 0 chr11 96957303 96957330 -53826223 + AT_rich Low_complexity Low_complexity 1 27 0 2372 127 42 42 chr11 96957398 96957856 -53825697 + L1MB1 LINE L1 5711 6168 0 297 135 0 0 chr11 96958452 96958504 -53825049 + (CTA)n Simple_repeat Simple_repeat 1 52 0 839 310 111 58 chr11 96958743 96959657 -53823896 - L1M4 LINE L1 -2036 4110 3149 2868 82 5 0 chr11 96959866 96960258 -53823295 - L1PA7 LINE L1 0 6154 5761 647 361 79 19 chr11 96960408 96961093 -53822460 - L1M4 LINE L1 -3119 3027 2302 186 43 0 0 chr11 96961372 96961395 -53822158 + (TTG)n Simple_repeat Simple_repeat 2 24 0 765 147 0 0 chr11 96961418 96961534 -53822019 - AluJb SINE Alu -169 143 28 2315 52 13 32 chr11 96962485 96962795 -53820758 + AluY SINE Alu 1 304 -7 224 328 0 25 chr11 96964406 96964528 -53819025 + (CATATA)n Simple_repeat Simple_repeat 2 120 0 199 77 26 26 chr11 96968380 96968419 -53815134 + (GAAA)n Simple_repeat Simple_repeat 1 39 0 2093 128 3 0 chr11 96970805 96971110 -53812443 - AluSq SINE Alu -7 306 1 265 333 108 8 chr11 96971295 96971415 -53812138 - MER5A DNA MER1_type -3 186 55 183 196 20 98 chr11 96972215 96972266 -53811287 + MIR SINE MIR 23 69 -139 204 354 126 26 chr11 96973330 96973632 -53809921 + L2 LINE L2 2939 3270 -2 213 39 0 0 chr11 96974032 96974058 -53809495 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 1559 145 11 0 chr11 96975629 96975905 -53807648 + L1MA5 LINE L1 6021 6299 -1 288 343 146 7 chr11 96976328 96976465 -53807088 + L2 LINE L2 3116 3271 -1 247 322 116 0 chr11 96976491 96976612 -53806941 - MIR SINE MIR -99 163 29 306 0 0 0 chr11 96977422 96977456 -53806097 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 57 0 0 chr11 96977716 96977751 -53805802 + AT_rich Low_complexity Low_complexity 1 35 0 256 269 9 28 chr11 96978134 96978242 -53805311 + (TATATG)n Simple_repeat Simple_repeat 3 108 0 30 59 0 0 chr11 96978431 96978482 -53805071 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr11 96978722 96978745 -53804808 + AT_rich Low_complexity Low_complexity 1 23 0 211 333 0 28 chr11 96979736 96979808 -53803745 + MIR SINE MIR 6 75 -187 291 241 25 38 chr11 96979815 96979894 -53803659 + MIR SINE MIR 179 256 -6 518 314 43 11 chr11 96980116 96980304 -53803249 - MIR SINE MIR -8 254 61 283 281 34 41 chr11 96980350 96980496 -53803057 + MIR SINE MIR 92 236 -26 257 313 68 41 chr11 96980863 96981010 -53802543 + L2 LINE L2 3122 3272 0 2128 104 3 3 chr11 96981429 96981717 -53801836 + AluSg SINE Alu 1 288 -22 305 24 24 0 chr11 96982856 96982898 -53800655 + (TC)n Simple_repeat Simple_repeat 2 44 0 * 369 0 0 0 chr11 96982897 96982938 -53800615 + (TG)n Simple_repeat Simple_repeat 2 42 0 305 303 91 10 chr11 96983994 96984093 -53799460 - MER91C DNA MER1_type 0 140 34 2153 132 3 0 chr11 96984466 96984811 -53798742 - AluSq SINE Alu 0 346 1 646 338 42 8 chr11 96986035 96986275 -53797278 - MIR SINE MIR -13 249 2 181 308 90 13 chr11 96986665 96986743 -53796810 - MIR SINE MIR -109 153 70 4112 137 13 0 chr11 96987750 96988378 -53795175 + L1PA15 LINE L1 5509 6144 -21 21 71 0 0 chr11 96988871 96988913 -53794640 + AT_rich Low_complexity Low_complexity 1 42 0 252 186 0 0 chr11 96988943 96988986 -53794567 - MIR SINE MIR -34 228 186 321 313 178 10 chr11 96989040 96989248 -53794305 - MIR SINE MIR 0 262 20 208 298 223 16 chr11 96989457 96989578 -53793975 - L2 LINE L2 -6 3266 3121 584 324 118 25 chr11 96989942 96990423 -53793130 - L2 LINE L2 -642 2672 2147 395 360 94 22 chr11 96991440 96991715 -53791838 - L2 LINE L2 -2818 496 202 1036 282 88 58 chr11 96993164 96993957 -53789596 + L2 LINE L2 2497 3307 -6 7360 114 19 0 chr11 96994007 96995039 -53788514 + THE1B-int LTR MaLR 529 1580 0 2050 136 11 43 chr11 96995039 96995415 -53788138 + THE1B LTR MaLR 1 364 0 580 258 137 70 chr11 96995573 96995945 -53787608 + MLT1L LTR MaLR 214 610 -5 220 260 0 0 chr11 96996040 96996090 -53787463 + (TG)n Simple_repeat Simple_repeat 1 50 0 486 304 68 0 chr11 96997208 96997369 -53786184 - MIR SINE MIR -71 191 20 339 261 54 65 chr11 96998292 96998476 -53785077 + L1ME LINE L1 5618 5799 -322 747 224 47 0 chr11 96998967 96999137 -53784416 - MIR SINE MIR 0 262 85 738 227 43 0 chr11 96999460 96999623 -53783930 + MER69A DNA AcHobo 3 172 -5 215 363 82 23 chr11 97000173 97000344 -53783209 + L2 LINE L2 3114 3294 -19 2372 84 0 31 chr11 97001022 97001343 -53782210 - AluY SINE Alu 0 311 1 223 252 18 0 chr11 97001698 97001809 -53781744 + (CATATA)n Simple_repeat Simple_repeat 3 115 0 295 385 53 6 chr11 97001863 97002032 -53781521 + MIR SINE MIR 2 178 -84 633 275 11 28 chr11 97002048 97002071 -53781482 - MIR SINE MIR -72 190 168 1772 144 42 63 chr11 97002071 97002452 -53781101 + THE1C LTR MaLR 3 375 0 633 275 11 28 chr11 97002452 97002610 -53780943 - MIR SINE MIR -94 168 12 247 314 57 86 chr11 97002898 97003038 -53780515 - L2 LINE L2 -15 3257 3122 2062 126 3 0 chr11 97003081 97003367 -53780186 + AluSx SINE Alu 2 288 -24 223 328 60 0 chr11 97004073 97004140 -53779413 + L2 LINE L2 3170 3240 -32 1783 174 72 19 chr11 97004150 97004369 -53779184 + MSTD LTR MaLR 1 250 -146 207 100 0 0 chr11 97004369 97004399 -53779154 + (CA)n Simple_repeat Simple_repeat 1 30 0 1783 174 72 19 chr11 97004399 97004553 -53779000 + MSTD LTR MaLR 250 394 -2 274 343 45 8 chr11 97005315 97005449 -53778104 + L2 LINE L2 1873 2011 -1303 254 306 72 9 chr11 97005592 97005703 -53777850 + L2 LINE L2 2293 2410 -904 750 357 95 29 chr11 97005814 97006705 -53776848 + L2 LINE L2 2340 3306 -7 205 326 179 23 chr11 97007533 97007751 -53775802 - L2 LINE L2 -963 2351 2100 294 302 122 29 chr11 97007973 97008178 -53775375 + MIR SINE MIR 1 224 -38 1436 181 91 4 chr11 97009475 97009751 -53773802 + AluJb SINE Alu 1 300 -12 361 360 136 35 chr11 97009999 97010368 -53773185 - L2 LINE L2 -462 2852 2447 768 310 24 0 chr11 97011151 97011364 -53772189 + MIR SINE MIR 12 229 -33 532 299 39 0 chr11 97011371 97011525 -53772028 + MIR SINE MIR 103 262 0 443 284 130 19 chr11 97011902 97012117 -53771436 + MIR SINE MIR 12 250 -12 1514 210 14 7 chr11 97012327 97012618 -53770935 - AluJo SINE Alu -17 295 3 2305 159 86 6 chr11 97014285 97014751 -53768802 - MLT1D LTR MaLR 0 505 3 289 277 73 73 chr11 97014782 97014988 -53768565 - L3 LINE CR1 -545 1032 827 442 328 46 11 chr11 97015309 97015483 -53768070 + MIR SINE MIR 2 181 -81 443 226 8 57 chr11 97015504 97015630 -53767923 + MER5A DNA MER1_type 6 110 -68 2229 133 0 0 chr11 97016605 97016914 -53766639 - AluSg SINE Alu -1 309 1 210 333 24 24 chr11 97016999 97017083 -53766470 - MIR SINE MIR -86 122 39 496 313 27 58 chr11 97017340 97017599 -53765954 + MIR SINE MIR 2 252 -10 395 339 74 58 chr11 97017879 97018048 -53765505 + L2 LINE L2 2827 2992 -280 1081 56 14 0 chr11 97018048 97018190 -53765363 - L1PA7 LINE L1 0 6154 6011 395 339 74 58 chr11 97018190 97018451 -53765102 + L2 LINE L2 2992 3264 -8 1871 106 4 0 chr11 97018865 97019119 -53764434 + AluSc SINE Alu 51 305 -4 812 271 38 8 chr11 97019658 97019898 -53763655 + MIR SINE MIR 6 252 -10 263 339 87 0 chr11 97019968 97020083 -53763470 - L2 LINE L2 0 3313 3189 203 253 58 103 chr11 97020709 97020796 -53762757 + L2 LINE L2 3208 3290 -23 181 216 78 59 chr11 97020995 97021046 -53762507 - L2 LINE L2 -20 3252 3201 235 215 46 0 chr11 97021110 97021175 -53762378 + L2 LINE L2 3203 3270 -2 285 325 42 63 chr11 97022662 97022853 -53760700 + MIR SINE MIR 64 250 -12 214 333 0 0 chr11 97022909 97022972 -53760581 + CT-rich Low_complexity Low_complexity 2 64 0 226 284 49 25 chr11 97023129 97023210 -53760343 + MLT1L LTR MaLR 213 295 -320 425 246 288 5 chr11 97023416 97023607 -53759946 - MIR SINE MIR -10 252 8 354 272 0 148 chr11 97024950 97025119 -53758434 - L2 LINE L2 -4 3268 3125 724 284 67 13 chr11 97025309 97025534 -53758019 - MIR SINE MIR -3 259 23 192 342 0 13 chr11 97025638 97025714 -53757839 - MIR SINE MIR -187 75 1 185 326 81 47 chr11 97028466 97028552 -53755001 - L2 LINE L2 -21 3292 3204 603 189 15 129 chr11 97029334 97029535 -53754018 - MER5B DNA MER1_type 0 178 1 633 297 110 54 chr11 97029648 97030130 -53753423 + MLT1J LTR MaLR 1 509 -2 294 113 84 0 chr11 97030299 97030370 -53753183 + GA-rich Low_complexity Low_complexity 4 80 0 198 0 0 0 chr11 97030844 97030866 -53752687 + (TA)n Simple_repeat Simple_repeat 2 23 0 1903 114 52 7 chr11 97030866 97031155 -53752398 - AluSx SINE Alu -5 307 6 22 0 10 0 chr11 97031166 97031233 -53752320 + AT_rich Low_complexity Low_complexity 1 22 0 258 379 23 8 chr11 97031800 97031932 -53751621 - MER5A DNA MER1_type -1 188 55 233 337 22 11 chr11 97031971 97032060 -53751493 - L3 LINE CR1 -32 1545 1456 24 0 0 0 chr11 97033190 97033214 -53750339 + AT_rich Low_complexity Low_complexity 1 24 0 373 320 0 0 chr11 97034389 97034492 -53749061 + L2 LINE L2 3134 3236 -36 2266 107 0 0 chr11 97034783 97035073 -53748480 + AluSg SINE Alu 4 293 -17 192 77 0 0 chr11 97035269 97035295 -53748258 + (T)n Simple_repeat Simple_repeat 1 26 0 312 287 148 8 chr11 97035521 97035643 -53747910 - MIR SINE MIR -7 255 117 235 275 29 0 chr11 97035781 97035850 -53747703 + MER117 DNA MER1_type 103 173 -24 424 289 63 89 chr11 97036463 97036778 -53746775 + L2 LINE L2 2966 3272 0 211 254 36 0 chr11 97036871 97036926 -53746627 + MIR SINE MIR 111 167 -95 322 321 9 0 chr11 97037860 97037966 -53745587 - MIR SINE MIR -34 228 122 191 266 138 32 chr11 97039290 97039384 -53744169 + MIR SINE MIR 50 153 -109 29 28 0 0 chr11 97039391 97039427 -53744126 + AT_rich Low_complexity Low_complexity 1 36 0 2263 286 79 38 chr11 97039555 97040700 -53742853 - L2 LINE L2 0 3313 2118 21 0 0 0 chr11 97040779 97040800 -53742753 + AT_rich Low_complexity Low_complexity 1 21 0 1667 98 126 20 chr11 97041152 97041442 -53742111 + AluY SINE Alu 1 317 0 493 345 0 12 chr11 97041617 97041788 -53741765 - MIR SINE MIR -86 176 8 225 254 17 0 chr11 97042320 97042379 -53741174 + CT-rich Low_complexity Low_complexity 3 62 0 249 319 94 36 chr11 97042441 97042579 -53740974 + L2 LINE L2 3125 3270 -2 199 317 79 30 chr11 97042664 97042765 -53740788 + L2 LINE L2 3208 3313 0 21 36 0 0 chr11 97042882 97042910 -53740643 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr11 97044396 97044422 -53739131 + AT_rich Low_complexity Low_complexity 1 26 0 297 0 0 0 chr11 97044499 97044532 -53739021 + (CA)n Simple_repeat Simple_repeat 2 34 0 226 244 114 57 chr11 97044645 97044710 -53738843 - HAL1 LINE L1 -347 2160 2100 212 0 36 0 chr11 97044710 97044738 -53738815 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1941 138 0 34 chr11 97044740 97045036 -53738517 - AluSx SINE Alu -25 287 2 226 244 114 57 chr11 97045036 97045090 -53738463 - HAL1 LINE L1 -407 2100 2031 349 340 0 11 chr11 97045093 97045187 -53738366 + L2 LINE L2 3178 3270 -43 954 241 85 27 chr11 97045188 97045665 -53737888 + MER39 LTR ERV1 2 707 0 203 152 0 0 chr11 97045699 97045732 -53737821 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 203 250 0 0 chr11 97046068 97046108 -53737445 + L2 LINE L2 3203 3242 -71 189 0 0 0 chr11 97046401 97046422 -53737131 + (CA)n Simple_repeat Simple_repeat 2 22 0 298 267 30 20 chr11 97046656 97046757 -53736796 + MIR SINE MIR 161 262 0 238 293 100 43 chr11 97047141 97047281 -53736272 + L2 LINE L2 2710 2857 -457 627 365 28 63 chr11 97047300 97047758 -53735795 - L2 LINE L2 -13 3259 2818 796 243 67 49 chr11 97047842 97048318 -53735235 + MER39 LTR ERV1 1 707 0 23 0 0 0 chr11 97048913 97048936 -53734617 + AT_rich Low_complexity Low_complexity 1 23 0 187 260 330 10 chr11 97049558 97049658 -53733895 - L2 LINE L2 -2 3270 3139 28 29 0 0 chr11 97051155 97051190 -53732363 + AT_rich Low_complexity Low_complexity 1 35 0 250 271 49 49 chr11 97052158 97052280 -53731273 - MIR SINE MIR -28 234 113 383 255 64 88 chr11 97052409 97052613 -53730940 + MIR SINE MIR 20 218 -44 1647 196 0 22 chr11 97053096 97053407 -53730146 - AluJb SINE Alu -4 308 5 2298 80 0 10 chr11 97053687 97053987 -53729566 + AluSc SINE Alu 1 297 -12 321 155 0 0 chr11 97054019 97054077 -53729476 + CT-rich Low_complexity Low_complexity 3 60 0 2272 78 10 3 chr11 97054077 97054385 -53729168 - AluY SINE Alu -1 310 1 1132 170 13 70 chr11 97054618 97054847 -53728706 - MER58A DNA MER1_type 0 224 9 3285 125 19 0 chr11 97055412 97055941 -53727612 - L1MA5A LINE L1 -2 6295 5757 25 75 0 0 chr11 97057127 97057180 -53726373 + AT_rich Low_complexity Low_complexity 1 53 0 344 341 52 7 chr11 97059188 97059323 -53724230 - MIR3 SINE MIR -49 159 19 2463 63 7 0 chr11 97060024 97060325 -53723228 + AluY SINE Alu 1 303 -8 459 169 0 25 chr11 97060494 97060612 -53722941 + CT-rich Low_complexity Low_complexity 1 115 0 31 0 0 0 chr11 97060809 97060840 -53722713 + AT_rich Low_complexity Low_complexity 1 31 0 239 370 34 8 chr11 97061407 97061526 -53722027 + MIR3 SINE MIR 44 165 -43 228 163 0 0 chr11 97061676 97061719 -53721834 + CT-rich Low_complexity Low_complexity 2 44 0 349 269 123 40 chr11 97061721 97061974 -53721579 - L1MEc LINE L1 -4268 2128 1855 728 274 102 0 chr11 97062079 97062276 -53721277 - MER58A DNA MER1_type -2 222 6 750 178 108 105 chr11 97062316 97062631 -53720922 + MER46C DNA MER2_type 2 317 -21 520 308 158 9 chr11 97062962 97063183 -53720370 + MIR SINE MIR 9 262 0 364 310 135 71 chr11 97066099 97066533 -53717020 - L2 LINE L2 -4 3268 2779 1972 120 23 13 chr11 97066533 97066841 -53716712 + AluSq SINE Alu 1 311 -2 364 310 135 71 chr11 97066841 97067086 -53716467 - L2 LINE L2 -493 2779 2551 1715 262 57 54 chr11 97067500 97068110 -53715443 + L2 LINE L2 2366 2973 -340 2496 182 49 0 chr11 97068110 97068560 -53714993 + MER70A LTR ERVL 1 472 0 1715 262 57 54 chr11 97068560 97068807 -53714746 + L2 LINE L2 2973 3224 -89 2289 88 0 10 chr11 97068807 97069113 -53714440 - AluY SINE Alu -8 303 1 1715 262 57 54 chr11 97069113 97069203 -53714350 + L2 LINE L2 3224 3312 -1 2557 175 22 52 chr11 97069282 97069837 -53713716 - L1PA16 LINE L1 -1 6165 5628 10528 218 15 7 chr11 97069839 97072239 -53711314 - L1PA16 LINE L1 -801 5345 2927 209 56 0 28 chr11 97072239 97072275 -53711278 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 7120 139 14 6 chr11 97072275 97073096 -53710457 - L1PA2 LINE L1 -16 6139 5326 947 28 0 0 chr11 97073096 97073203 -53710350 - U6 snRNA snRNA 0 107 1 7120 139 14 6 chr11 97073203 97074028 -53709525 - L1PA2 LINE L1 -829 5326 2096 313 312 92 35 chr11 97074475 97074648 -53708905 + MIR SINE MIR 48 230 -32 221 351 0 0 chr11 97075039 97075116 -53708437 - MIR SINE MIR -112 150 74 189 74 0 0 chr11 97075552 97075579 -53707974 + (TAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr11 97075940 97075961 -53707592 + AT_rich Low_complexity Low_complexity 1 21 0 498 282 108 26 chr11 97076244 97076439 -53707114 + MIR SINE MIR 2 212 -50 649 293 261 17 chr11 97076529 97076996 -53706557 - L2 LINE L2 -337 2977 2397 341 331 50 0 chr11 97077167 97077288 -53706265 + L2 LINE L2 3187 3313 0 348 326 74 23 chr11 97077516 97077840 -53705713 + L1MDb LINE L1 34 351 -6189 393 225 39 112 chr11 97078395 97078573 -53704980 + L1MDb LINE L1 918 1082 -5461 311 357 51 0 chr11 97078795 97078893 -53704660 - L2 LINE L2 -2 3270 3168 228 196 0 0 chr11 97079517 97079563 -53703990 - MIR3 SINE MIR -7 201 156 464 193 0 0 chr11 97079643 97079731 -53703822 + Charlie8 DNA MER1_type 114 201 -2216 355 298 97 0 chr11 97079771 97079885 -53703668 - MIR3 SINE MIR -48 160 36 198 361 76 17 chr11 97080435 97080554 -53702999 + L2 LINE L2 3103 3228 -44 219 366 12 12 chr11 97080652 97080734 -53702819 + L2 LINE L2 3192 3273 -40 201 211 141 0 chr11 97081728 97081799 -53701754 + MIR SINE MIR 123 203 -59 297 333 66 27 chr11 97082478 97082661 -53700892 - MIR SINE MIR -37 225 36 260 295 51 0 chr11 97082954 97083032 -53700521 - L2 LINE L2 0 3313 3232 616 297 65 16 chr11 97083095 97083341 -53700212 + MIR SINE MIR 4 261 -1 1836 103 0 126 chr11 97083367 97083715 -53699838 - AluSq SINE Alu -9 304 1 891 201 0 0 chr11 97084821 97084980 -53698573 + FRAM SINE Alu 1 159 -17 846 204 6 0 chr11 97085912 97086079 -53697474 + L1PA16 LINE L1 5996 6163 -3 274 232 0 0 chr11 97086414 97086470 -53697083 - MIR SINE MIR -142 120 65 875 230 49 110 chr11 97086913 97087322 -53696231 + MLT1B LTR MaLR 1 384 -6 725 311 14 5 chr11 97087325 97087544 -53696009 - MIR SINE MIR -41 221 1 184 347 113 13 chr11 97087851 97088001 -53695552 + L2 LINE L2 2329 2493 -821 991 270 128 18 chr11 97088991 97089391 -53694162 - MLT1J2 LTR MaLR -6 444 1 1144 297 77 20 chr11 97090069 97090671 -53692882 + L2 LINE L2 2678 3313 0 405 0 0 0 chr11 97090824 97090869 -53692684 + (CA)n Simple_repeat Simple_repeat 2 46 0 2156 102 3 0 chr11 97090871 97091155 -53692398 - AluSp SINE Alu -28 285 1 405 343 114 0 chr11 97091785 97091960 -53691593 - MIR SINE MIR -55 207 13 565 218 7 0 chr11 97092248 97092390 -53691163 - L1MA10 LINE L1 -2 6332 6190 554 194 23 31 chr11 97092395 97092524 -53691029 - L1ME1 LINE L1 -141 6094 5967 1287 176 66 4 chr11 97092525 97092769 -53690784 - AluJo SINE Alu -10 302 44 1557 243 57 8 chr11 97092770 97093292 -53690261 - L1ME1 LINE L1 -274 5959 5396 567 243 24 2 chr11 97093290 97093429 -53690124 + L1ME LINE L1 5323 5459 -707 * 694 221 77 5 chr11 97093575 97093783 -53689770 - L1ME1 LINE L1 -924 5291 5069 1355 196 0 72 chr11 97093783 97094089 -53689464 - AluJo SINE Alu -18 294 11 23 33 0 0 chr11 97094098 97094128 -53689425 + AT_rich Low_complexity Low_complexity 1 30 0 5906 150 91 7 chr11 97094128 97095263 -53688290 - Tigger3b DNA MER2_type 0 1231 2 2644 157 15 47 chr11 97095357 97096191 -53687362 - L1M2 LINE L1 -563 5749 4925 390 299 67 20 chr11 97096189 97096443 -53687110 - L1ME1 LINE L1 -1758 4457 4192 * 1968 115 7 46 chr11 97096509 97096813 -53686740 + AluSx SINE Alu 2 293 -19 276 286 12 0 chr11 97096902 97096986 -53686567 - L1ME1 LINE L1 -2289 3926 3842 3845 25 0 0 chr11 97096994 97097442 -53686111 - L1PA3 LINE L1 -1157 4989 4542 7712 25 0 0 chr11 97097442 97098594 -53684959 + L1PA3 LINE L1 5001 6152 -3 1791 255 43 36 chr11 97098606 97098695 -53684858 - L1ME1 LINE L1 -2376 3839 3752 243 0 0 0 chr11 97098695 97098722 -53684831 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1791 255 43 36 chr11 97098722 97099374 -53684179 - L1ME1 LINE L1 -2463 3752 3093 506 281 287 31 chr11 97099494 97099818 -53683735 - L1ME1 LINE L1 -5949 447 41 1435 73 0 0 chr11 97099870 97100047 -53683506 - AluY SINE Alu -16 295 119 2437 204 66 36 chr11 97100653 97101232 -53682321 - MER21A LTR ERV1 -17 914 319 2269 155 27 17 chr11 97101259 97101672 -53681881 - MSTA LTR MaLR -11 417 1 8919 187 10 4 chr11 97101674 97103312 -53680241 - MSTA-int LTR MaLR -2 1649 1 2303 166 26 26 chr11 97103312 97103740 -53679813 - MSTA LTR MaLR 0 428 1 482 200 12 0 chr11 97103740 97103825 -53679728 - MER39 LTR ERV1 -303 404 319 21 0 0 0 chr11 97103957 97103978 -53679575 + AT_rich Low_complexity Low_complexity 1 21 0 311 361 57 16 chr11 97104630 97104752 -53678801 - L2 LINE L2 -3 3269 3143 192 332 66 83 chr11 97105798 97106355 -53677198 - L2 LINE L2 -466 2848 2301 1545 220 41 44 chr11 97107150 97107563 -53675990 - MLT1C LTR MaLR -2 465 54 7828 13 1 0 chr11 97107778 97108952 -53674601 + L1PA2 LINE L1 4979 6153 -2 567 120 70 7 chr11 97109326 97109609 -53673944 + (TA)n Simple_repeat Simple_repeat 1 300 0 347 92 104 12 chr11 97109629 97109793 -53673760 + (TA)n Simple_repeat Simple_repeat 1 179 0 536 288 24 40 chr11 97109846 97110159 -53673394 + L1ME LINE L1 1772 2109 -4471 437 262 88 3 chr11 97110573 97110861 -53672692 + L1ME LINE L1 5621 5929 -627 331 344 128 0 chr11 97111068 97111248 -53672305 + MIR SINE MIR 7 209 -53 198 229 14 57 chr11 97112258 97112328 -53671225 - MER5C DNA MER1_type -240 84 18 309 328 55 38 chr11 97112735 97112918 -53670635 + L2 LINE L2 3128 3313 0 213 351 45 9 chr11 97113034 97113145 -53670408 - L2 LINE L2 0 3272 3158 26 64 0 0 chr11 97114070 97114117 -53669436 + AT_rich Low_complexity Low_complexity 1 47 0 1456 255 53 3 chr11 97116644 97117001 -53666552 - MER82 DNA MER2_type 0 653 279 869 236 17 46 chr11 97117001 97117305 -53666248 - MER2 DNA MER2_type 0 345 6 1297 209 50 0 chr11 97117317 97117594 -53665959 - MER82 DNA MER2_type -362 291 1 318 374 55 6 chr11 97118102 97118265 -53665288 - MLT1I LTR MaLR -14 395 225 1307 155 79 14 chr11 97118280 97118554 -53664999 + MER1B DNA MER1_type 1 329 0 593 258 19 19 chr11 97118554 97118692 -53664861 - MLT1I LTR MaLR -197 212 75 22 88 0 0 chr11 97119868 97119925 -53663628 + AT_rich Low_complexity Low_complexity 1 57 0 239 226 366 0 chr11 97120314 97120407 -53663146 - L2 LINE L2 0 3272 3146 228 375 12 0 chr11 97121052 97121132 -53662421 + L2 LINE L2 2891 2971 -301 282 354 42 0 chr11 97121278 97121374 -53662179 - L2 LINE L2 -18 3295 3196 245 368 0 0 chr11 97121460 97121528 -53662025 + L2 LINE L2 3190 3257 -15 414 194 204 0 chr11 97122015 97122138 -53661415 - FLAM_A SINE Alu 0 143 1 193 284 123 25 chr11 97122511 97122592 -53660961 - MIR SINE MIR -137 125 37 2199 253 17 40 chr11 97122737 97123370 -53660183 + MLT1E3 LTR MaLR 5 623 -1 1630 179 14 42 chr11 97124564 97124732 -53658821 - MER2 DNA MER2_type 0 344 190 2166 125 0 10 chr11 97124732 97125044 -53658509 - AluSq SINE Alu -4 309 1 1630 179 14 42 chr11 97125044 97125228 -53658325 - MER2 DNA MER2_type -154 190 2 209 305 49 12 chr11 97125241 97125323 -53658230 - MIR SINE MIR -96 166 82 387 0 0 0 chr11 97125460 97125503 -53658050 + (CA)n Simple_repeat Simple_repeat 2 44 0 2270 187 40 2 chr11 97126498 97126920 -53656633 - MSTB2 LTR MaLR -4 453 16 362 225 18 107 chr11 97127580 97127814 -53655739 + L1ME3A LINE L1 1269 1562 -4820 812 252 94 109 chr11 97127814 97127910 -53655643 + L1ME3A LINE L1 3321 3417 -2965 2122 115 7 3 chr11 97127910 97128215 -53655338 + AluSg SINE Alu 1 306 -4 812 252 94 109 chr11 97128215 97128511 -53655042 + L1ME3A LINE L1 3417 3716 -2666 198 0 0 0 chr11 97128511 97128533 -53655020 + (CA)n Simple_repeat Simple_repeat 1 22 0 812 252 94 109 chr11 97128533 97128598 -53654955 + L1ME3A LINE L1 3716 3780 -2602 360 0 0 0 chr11 97128598 97128638 -53654915 + (CA)n Simple_repeat Simple_repeat 1 40 0 812 252 94 109 chr11 97128638 97128931 -53654622 + L1ME3A LINE L1 3780 4062 -2320 1684 143 28 34 chr11 97128941 97129262 -53654291 - L1MB1 LINE L1 -3 6165 5847 1310 153 99 0 chr11 97129263 97129486 -53654067 + L1M3 LINE L1 5549 5793 -375 912 294 122 38 chr11 97129547 97130772 -53652781 + L1ME3A LINE L1 4137 5464 -918 218 32 32 0 chr11 97130775 97130806 -53652747 + (TG)n Simple_repeat Simple_repeat 2 33 0 2024 288 28 35 chr11 97130865 97131309 -53652244 + L1ME3A LINE L1 5490 5935 -471 2384 154 49 9 chr11 97131309 97131776 -53651777 + LTR19A LTR ERV1 1 486 0 2024 288 28 35 chr11 97131776 97132245 -53651308 + L1ME3A LINE L1 5935 6397 -9 193 229 0 0 chr11 97132585 97132620 -53650933 - MIR SINE MIR -7 255 221 188 265 194 31 chr11 97132588 97132686 -53650867 - L2 LINE L2 -16 3297 3184 * 364 301 11 0 chr11 97133136 97133229 -53650324 - L2 LINE L2 -6 3266 3173 585 337 124 29 chr11 97133474 97133892 -53649661 - L2 LINE L2 -683 2631 2174 530 336 80 21 chr11 97134444 97134780 -53648773 + L2 LINE L2 1952 2307 -1007 252 372 39 26 chr11 97135107 97135263 -53648290 + L2 LINE L2 2689 2846 -468 220 306 113 0 chr11 97136623 97136685 -53646868 - L2 LINE L2 -12 3260 3192 276 258 175 0 chr11 97136731 97136828 -53646725 + L2 LINE L2 3200 3313 0 241 364 11 0 chr11 97137100 97137188 -53646365 - L2 LINE L2 0 3272 3184 273 285 89 82 chr11 97137612 97137893 -53645660 + MLT1K LTR MaLR 159 441 -147 1478 232 0 0 chr11 97138362 97138659 -53644894 - AluJo SINE Alu -15 297 1 463 375 108 29 chr11 97139148 97139591 -53643962 - L2 LINE L2 -345 2969 2492 208 91 45 0 chr11 97139818 97139862 -53643691 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 3265 42 5 10 chr11 97140389 97140798 -53642755 - L1PA5 LINE L1 -5 6149 5743 2000 25 4 4 chr11 97140798 97141035 -53642518 + L1PA5 LINE L1 5509 5745 -409 2310 107 3 0 chr11 97141879 97142188 -53641365 - AluSg SINE Alu 0 310 1 319 253 0 32 chr11 97142464 97142559 -53640994 + L2 LINE L2 2197 2288 -1026 237 262 16 0 chr11 97143128 97143189 -53640364 + CT-rich Low_complexity Low_complexity 2 63 0 186 194 0 0 chr11 97143198 97143229 -53640324 + L2 LINE L2 3261 3291 -22 1324 336 72 16 chr11 97144057 97144940 -53638613 - L2 LINE L2 -15 3298 2365 2150 112 47 12 chr11 97144945 97145283 -53638270 + THE1A LTR MaLR 3 352 -3 11437 99 5 2 chr11 97145288 97146862 -53636691 + THE1A-int LTR MaLR 2 1580 0 2132 104 62 12 chr11 97146862 97147200 -53636353 + THE1A LTR MaLR 1 355 0 2256 97 0 10 chr11 97147512 97147820 -53635733 + AluY SINE Alu 1 305 -6 216 0 0 0 chr11 97147821 97147845 -53635708 + (CA)n Simple_repeat Simple_repeat 2 25 0 337 200 44 22 chr11 97147845 97147935 -53635618 - L1MC4 LINE L1 -1339 6703 6612 453 0 78 0 chr11 97147935 97148012 -53635541 + (TA)n Simple_repeat Simple_repeat 1 83 0 25 31 0 0 chr11 97149152 97149184 -53634369 + AT_rich Low_complexity Low_complexity 1 32 0 238 354 46 10 chr11 97149191 97149386 -53634167 + MIR SINE MIR 9 210 -52 234 204 185 0 chr11 97149453 97149507 -53634046 + L2 LINE L2 3250 3313 0 365 203 68 0 chr11 97149597 97149671 -53633882 - L2 LINE L2 -5 3267 3189 295 335 129 6 chr11 97150337 97150507 -53633046 - L2 LINE L2 -2 3311 3121 22 35 0 0 chr11 97150925 97150954 -53632599 + AT_rich Low_complexity Low_complexity 1 29 0 255 380 84 64 chr11 97152474 97152771 -53630782 + L2 LINE L2 2963 3265 -7 186 133 0 0 chr11 97152791 97152821 -53630732 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 315 0 0 0 chr11 97153544 97153579 -53629974 + (CAATT)n Simple_repeat Simple_repeat 1 35 0 200 266 16 31 chr11 97153580 97153644 -53629909 - L2 LINE L2 -12 3301 3239 338 315 134 0 chr11 97154366 97154515 -53629038 + MIR SINE MIR 1 169 -93 3310 171 81 44 chr11 97156138 97156881 -53626672 - LTR1 LTR ERV1 0 785 16 548 276 24 18 chr11 97157062 97157232 -53626321 + MIR SINE MIR 92 262 0 184 259 277 0 chr11 97157321 97157433 -53626120 - L3b LINE CR1 -119 1464 1322 1107 352 74 16 chr11 97158274 97158881 -53624672 + L2 LINE L2 2414 3058 -214 399 294 123 27 chr11 97158943 97159089 -53624464 + ERVL LTR ERVL 4143 4302 -1462 188 395 109 8 chr11 97159130 97159249 -53624304 + L2 LINE L2 3141 3271 -1 211 219 47 16 chr11 97159407 97159471 -53624082 - MIR SINE MIR -87 175 110 182 0 107 0 chr11 97159502 97159530 -53624023 + A-rich Low_complexity Low_complexity 5 35 0 449 267 30 84 chr11 97159816 97160078 -53623475 + LTR16A LTR ERVL 1 249 -201 1603 341 66 50 chr11 97160080 97161612 -53621941 + ERVL LTR ERVL 3474 5029 -735 1068 235 46 0 chr11 97162013 97162251 -53621302 - MER4D LTR ERV1 -114 789 541 1494 184 17 14 chr11 97162278 97162571 -53620982 - MER49 LTR ERV1 -629 294 1 453 284 146 21 chr11 97162631 97162873 -53620680 + LTR16A LTR ERVL 134 397 -53 1670 220 13 18 chr11 97163036 97163427 -53620126 + MLT1B LTR MaLR 1 389 -1 987 120 0 14 chr11 97163943 97164085 -53619468 + THE1C LTR MaLR 3 142 -233 278 324 130 14 chr11 97164219 97164309 -53619244 - MIR SINE MIR -8 254 176 1402 209 28 62 chr11 97164309 97164696 -53618857 - MLT1A2 LTR MaLR 0 374 1 278 324 130 14 chr11 97164696 97164821 -53618732 - MIR SINE MIR -86 176 14 287 276 13 13 chr11 97165106 97165182 -53618371 - L2 LINE L2 -35 3278 3203 531 293 6 6 chr11 97165613 97165787 -53617766 - MER5B DNA MER1_type -4 174 1 793 254 33 20 chr11 97166308 97166552 -53617001 - MIR SINE MIR -6 256 10 181 323 92 0 chr11 97166844 97166909 -53616644 + L2 LINE L2 3155 3225 -47 260 253 127 0 chr11 97166954 97167033 -53616520 + MER94 DNA DNA 11 99 -35 542 273 143 9 chr11 97167524 97167740 -53615813 + MIR SINE MIR 7 251 -11 975 168 7 0 chr11 97167965 97168120 -53615433 - MER2 DNA MER2_type -189 156 1 936 275 114 23 chr11 97168367 97168840 -53614713 + MER113 DNA MER1_type? 6 521 0 249 339 78 26 chr11 97168864 97169094 -53614459 + MIR SINE MIR 8 249 -13 23 0 0 0 chr11 97169107 97169130 -53614423 + AT_rich Low_complexity Low_complexity 1 23 0 250 259 65 56 chr11 97170839 97170947 -53612606 + MIR SINE MIR 20 128 -134 187 406 31 0 chr11 97171183 97171279 -53612274 - L2 LINE L2 -338 2976 2878 342 233 30 90 chr11 97171381 97171514 -53612039 - LTR33 LTR ERVL -14 507 383 612 316 14 33 chr11 97171636 97171851 -53611702 - LTR33 LTR ERVL -298 223 13 587 269 65 15 chr11 97171967 97172168 -53611385 + MIR SINE MIR 42 252 -10 225 65 0 0 chr11 97172267 97172298 -53611255 + (GA)n Simple_repeat Simple_repeat 2 32 0 207 330 143 9 chr11 97172351 97172463 -53611090 + L2 LINE L2 3142 3268 -4 180 304 0 0 chr11 97173591 97173637 -53609916 - L2 LINE L2 -12 3301 3256 21 0 0 0 chr11 97173649 97173670 -53609883 + AT_rich Low_complexity Low_complexity 1 21 0 452 295 24 24 chr11 97173727 97173893 -53609660 + MIR SINE MIR 88 253 -9 222 250 0 83 chr11 97175580 97175640 -53607913 + L2 LINE L2 3250 3304 -9 232 239 46 119 chr11 97176091 97176200 -53607353 - L2 LINE L2 -1 3271 3171 290 305 11 11 chr11 97176299 97176394 -53607159 + MER5A DNA MER1_type 95 189 0 221 237 0 34 chr11 97176394 97176451 -53607102 + MIR3 SINE MIR 153 207 -1 205 333 0 0 chr11 97176713 97176773 -53606780 + L2 LINE L2 3211 3270 -2 393 264 70 8 chr11 97177036 97177165 -53606388 - MIR SINE MIR -13 249 113 350 314 65 38 chr11 97177767 97177952 -53605601 - MIR SINE MIR -1 261 72 230 200 0 0 chr11 97178068 97178113 -53605440 + L1ME LINE L1 5818 5862 -259 373 269 109 23 chr11 97179358 97179477 -53604076 + L2 LINE L2 3033 3140 -132 5962 111 0 0 chr11 97179477 97180474 -53603079 - L1PA13 LINE L1 -1 6162 5156 373 269 109 23 chr11 97180474 97180564 -53602989 + L2 LINE L2 3140 3268 -4 396 0 0 0 chr11 97181212 97181256 -53602297 + (TG)n Simple_repeat Simple_repeat 1 44 0 549 308 28 33 chr11 97181413 97181624 -53601929 + MIR SINE MIR 49 258 -4 4245 146 23 28 chr11 97183110 97183939 -53599614 - L1MC2 LINE L1 -9 6335 5511 530 203 8 24 chr11 97184291 97184414 -53599139 - L1PA16 LINE L1 -16 6150 6030 274 353 38 85 chr11 97184453 97184996 -53598557 + L2 LINE L2 2759 3272 0 31424 109 13 53 chr11 97185026 97191434 -53592119 + L1PA7 LINE L1 12 6148 -6 261 418 42 8 chr11 97191603 97191842 -53591711 + L2 LINE L2 2807 3053 -219 180 0 0 0 chr11 97192034 97192054 -53591499 + (TTG)n Simple_repeat Simple_repeat 2 21 0 189 346 0 26 chr11 97192055 97192133 -53591420 + L2 LINE L2 3237 3312 -1 252 347 99 8 chr11 97192594 97192715 -53590838 + L2 LINE L2 3181 3312 -1 250 344 40 66 chr11 97192840 97192991 -53590562 - MIR SINE MIR -6 256 110 256 406 24 6 chr11 97193517 97193682 -53589871 + L2 LINE L2 3126 3293 -20 24 32 0 0 chr11 97194490 97194521 -53589032 + AT_rich Low_complexity Low_complexity 1 31 0 1717 188 145 10 chr11 97194541 97194940 -53588613 + L1M3 LINE L1 5274 5726 -442 189 341 176 0 chr11 97196491 97196582 -53586971 + MIR3 SINE MIR 85 191 -17 22 35 0 0 chr11 97198578 97198607 -53584946 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr11 97198675 97198697 -53584856 + AT_rich Low_complexity Low_complexity 1 22 0 1914 256 48 37 chr11 97199643 97199920 -53583633 - L1MC4a LINE L1 -55 7753 7481 1815 148 70 22 chr11 97199920 97200278 -53583275 + THE1C LTR MaLR 1 375 0 1914 256 48 37 chr11 97200278 97200789 -53582764 - L1MC4a LINE L1 -327 7481 6956 771 302 25 0 chr11 97200872 97201074 -53582479 - MIR SINE MIR -39 223 17 180 319 0 0 chr11 97202556 97202603 -53580950 - L3 LINE CR1 -17 1560 1514 277 355 46 13 chr11 97203069 97203221 -53580332 + MER5A DNA MER1_type 10 166 -23 247 326 11 11 chr11 97204799 97204894 -53578659 - MIR3 SINE MIR -9 199 105 282 282 69 46 chr11 97205432 97205563 -53577990 - MIR SINE MIR -109 153 20 1824 158 6 22 chr11 97205589 97205906 -53577647 - AluJb SINE Alu 0 312 1 522 294 85 0 chr11 97206293 97206470 -53577083 + MIR SINE MIR 70 261 -1 21 71 0 0 chr11 97207354 97207396 -53576157 + AT_rich Low_complexity Low_complexity 1 42 0 22052 186 25 23 chr11 97208245 97214117 -53569436 + L1PA11 LINE L1 6 7239 -373 2173 132 42 20 chr11 97214117 97214473 -53569080 - THE1B LTR MaLR 0 364 1 22052 186 25 23 chr11 97214473 97214846 -53568707 + L1PA11 LINE L1 7239 7610 -2 263 294 42 56 chr11 97215322 97215465 -53568088 + MIR SINE MIR 71 211 -51 276 391 21 36 chr11 97216133 97216325 -53567228 - MIR3 SINE MIR -1 207 19 267 353 83 13 chr11 97216615 97216771 -53566782 - MIR3 SINE MIR -9 199 33 2352 189 19 23 chr11 97217088 97217617 -53565936 + L1M4c LINE L1 1130 1656 -4728 19402 191 27 12 chr11 97217643 97223581 -53559972 + L1PA13 LINE L1 763 6809 -5 4102 230 79 34 chr11 97223574 97227424 -53556129 + L1PA15 LINE L1 1640 5708 -693 * 262 228 283 14 chr11 97227429 97227542 -53556011 - FRAM SINE Alu -47 119 1 4213 142 12 3 chr11 97227544 97228233 -53555320 + L1PA15 LINE L1 5697 6391 -10 3741 192 17 12 chr11 97228233 97229004 -53554549 + L1MB3 LINE L1 5390 6164 -19 651 245 110 43 chr11 97229061 97229343 -53554210 + MLT1D LTR MaLR 157 457 -48 6660 190 42 46 chr11 97229359 97230916 -53552637 + L1MC3 LINE L1 6226 7777 -8 479 177 150 41 chr11 97231521 97231585 -53551968 + MER33 DNA MER1_type 1 57 -2528 1737 205 59 71 chr11 97231585 97232146 -53551407 - MLT2B3 LTR ERVL 0 554 1 479 177 150 41 chr11 97232146 97232228 -53551325 + MER33 DNA MER1_type 57 163 -161 834 215 88 27 chr11 97232251 97232511 -53551042 - L1MD2 LINE L1 -350 6009 5734 37275 88 9 8 chr11 97232848 97238982 -53544571 - L1PA6 LINE L1 -2 6152 11 320 286 167 77 chr11 97239356 97239590 -53543963 - MIR SINE MIR -6 256 2 306 308 232 9 chr11 97240319 97240530 -53543023 + L2 LINE L2 2848 3105 -167 359 288 23 23 chr11 97240839 97240971 -53542582 + MIR SINE MIR 67 198 -64 27 29 0 0 chr11 97241066 97241100 -53542453 + AT_rich Low_complexity Low_complexity 1 34 0 591 162 99 9 chr11 97241101 97241212 -53542341 - FLAM_C SINE Alu -22 121 1 360 64 0 0 chr11 97241504 97241551 -53542002 + (TA)n Simple_repeat Simple_repeat 2 48 0 27 0 0 0 chr11 97242416 97242443 -53541110 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr11 97242478 97242517 -53541036 + AT_rich Low_complexity Low_complexity 1 39 0 213 39 0 0 chr11 97242579 97242605 -53540948 + (TAA)n Simple_repeat Simple_repeat 3 28 0 2141 133 48 20 chr11 97242608 97242962 -53540591 - THE1B LTR MaLR 0 364 1 573 313 32 20 chr11 97243241 97243487 -53540066 - MIR SINE MIR -12 250 2 356 261 122 0 chr11 97244179 97244294 -53539259 + MIR SINE MIR 117 245 -17 272 290 0 14 chr11 97244363 97244432 -53539121 - MER63A DNA MER1_type 0 210 143 243 330 115 40 chr11 97244807 97245007 -53538546 - MIR SINE MIR -32 230 16 963 299 116 24 chr11 97246827 97247318 -53536235 + L2 LINE L2 2771 3307 -6 369 0 0 0 chr11 97247526 97247567 -53535986 + (TG)n Simple_repeat Simple_repeat 2 42 0 707 324 84 52 chr11 97247756 97248337 -53535216 - L2 LINE L2 -443 2871 2272 225 362 168 13 chr11 97249465 97249614 -53533939 + MIR3 SINE MIR 20 191 -17 226 106 43 0 chr11 97249739 97249786 -53533767 + A-rich Low_complexity Low_complexity 2 50 0 254 146 0 0 chr11 97250204 97250245 -53533308 - L2 LINE L2 -8 3305 3265 2034 136 0 29 chr11 97250247 97250556 -53532997 - AluSx SINE Alu -12 300 1 21 0 0 0 chr11 97250964 97250985 -53532568 + AT_rich Low_complexity Low_complexity 1 21 0 277 379 159 19 chr11 97251175 97251758 -53531795 - L2 LINE L2 -436 2878 2214 187 288 85 0 chr11 97251745 97251804 -53531749 + L2 LINE L2 3193 3256 -57 * 189 74 0 0 chr11 97254205 97254232 -53529321 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1107 200 33 44 chr11 97254237 97254507 -53529046 - AluJo SINE Alu -30 282 16 452 329 69 29 chr11 97254535 97254809 -53528744 + L2 LINE L2 2532 2816 -498 217 362 32 0 chr11 97254877 97254971 -53528582 - L2 LINE L2 -604 2710 2614 284 269 86 11 chr11 97255381 97255474 -53528079 + L3 LINE CR1 1298 1397 -180 247 298 116 25 chr11 97255592 97255713 -53527840 - MIR SINE MIR -61 147 16 433 323 98 6 chr11 97256022 97256186 -53527367 - MIR SINE MIR -82 180 2 226 376 35 0 chr11 97256715 97256800 -53526753 + L2 LINE L2 3185 3272 0 306 0 0 0 chr11 97257292 97257326 -53526227 + (TG)n Simple_repeat Simple_repeat 2 35 0 2171 106 26 0 chr11 97257522 97257824 -53525729 - AluSg SINE Alu 0 310 1 217 333 0 0 chr11 97258720 97258774 -53524779 - L2 LINE L2 -15 3257 3204 225 128 0 0 chr11 97259191 97259238 -53524315 + (A)n Simple_repeat Simple_repeat 1 47 0 203 88 29 0 chr11 97260473 97260507 -53523046 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 385 301 119 21 chr11 97260510 97260653 -53522900 - MIR3 SINE MIR -21 187 31 361 364 39 0 chr11 97260857 97260986 -53522567 + L2 LINE L2 3137 3270 -2 198 328 103 46 chr11 97261050 97261245 -53522308 + MIR SINE MIR 1 206 -56 337 53 193 0 chr11 97261713 97261770 -53521783 - MADE1 DNA Mariner 0 80 13 181 349 61 0 chr11 97262179 97262245 -53521308 + MIR SINE MIR 46 115 -147 878 145 21 47 chr11 97262651 97262836 -53520717 + L1PB4 LINE L1 5719 5900 -256 12486 29 0 0 chr11 97262836 97265087 -53518466 + L1PA3 LINE L1 3901 6152 -3 1405 157 43 0 chr11 97265111 97265366 -53518187 + L1PB4 LINE L1 5890 6155 -1 2267 82 0 0 chr11 97265564 97265880 -53517673 - AluSc SINE Alu 0 316 1 390 321 28 0 chr11 97266400 97266509 -53517044 + MIR SINE MIR 32 143 -65 300 293 20 88 chr11 97266524 97266671 -53516882 - MER5A DNA MER1_type -2 187 51 396 373 73 27 chr11 97267336 97267596 -53515957 + L2 LINE L2 3001 3272 0 505 211 78 33 chr11 97270197 97270377 -53513176 + MER53 DNA DNA 2 189 0 438 307 118 0 chr11 97272751 97272904 -53510649 - MIR3 SINE MIR 0 208 38 1297 296 47 17 chr11 97274444 97275238 -53508315 + L1MEc LINE L1 36 901 -5495 2328 252 51 45 chr11 97275248 97275852 -53507701 + L1MEc LINE L1 2475 3073 -3142 1913 181 45 24 chr11 97275852 97276271 -53507282 - MSTB1 LTR MaLR -2 430 3 2328 252 51 45 chr11 97276271 97276325 -53507228 + L1MEc LINE L1 3073 3125 -3090 2813 16 0 0 chr11 97276325 97276639 -53506914 + AluYb8 SINE Alu 1 314 -4 2261 126 0 0 chr11 97276648 97276958 -53506595 + AluSg SINE Alu 1 310 0 2328 252 51 45 chr11 97276958 97277343 -53506210 + L1MEc LINE L1 3132 3536 -2679 203 133 0 0 chr11 97277343 97277373 -53506180 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 400 361 70 0 chr11 97278087 97278317 -53505236 - MIR SINE MIR -15 247 2 352 374 5 24 chr11 97279299 97279505 -53504048 - L3 LINE CR1 -734 843 642 291 389 36 0 chr11 97279527 97279666 -53503887 + MIR SINE MIR 7 150 -112 1907 188 18 25 chr11 97280080 97280478 -53503075 - MSTD LTR MaLR -1 395 1 1717 109 46 39 chr11 97280506 97280790 -53502763 + AluY SINE Alu 18 303 -8 243 370 36 18 chr11 97280946 97281111 -53502442 + MIR SINE MIR 60 227 -35 300 53 0 0 chr11 97281741 97281779 -53501774 + (A)n Simple_repeat Simple_repeat 1 38 0 342 311 106 8 chr11 97282485 97282617 -53500936 - L2 LINE L2 -5 3308 3164 602 333 22 0 chr11 97282816 97282999 -53500554 - L2 LINE L2 -212 3060 2874 242 211 0 53 chr11 97283042 97283118 -53500435 - L1M4 LINE L1 -1587 4559 4488 258 192 0 0 chr11 97283165 97283217 -53500336 + CT-rich Low_complexity Low_complexity 1 52 0 1683 279 109 68 chr11 97283231 97284537 -53499016 - HAL1 LINE L1 -1048 1459 101 1964 165 3 29 chr11 97284841 97285187 -53498366 - MER1B DNA MER1_type 0 337 1 42 20 0 0 chr11 97286833 97286882 -53496671 + AT_rich Low_complexity Low_complexity 1 49 0 1214 276 71 47 chr11 97288116 97288698 -53494855 - L2 LINE L2 -18 3295 2701 35 54 0 0 chr11 97289398 97289454 -53494099 + AT_rich Low_complexity Low_complexity 1 56 0 1787 187 0 0 chr11 97289578 97289877 -53493676 + AluSx SINE Alu 1 299 -13 22 35 0 0 chr11 97289963 97289992 -53493561 + AT_rich Low_complexity Low_complexity 1 29 0 267 356 0 0 chr11 97290391 97290526 -53493027 + A-rich Low_complexity Low_complexity 1 135 0 48 0 0 0 chr11 97290693 97290741 -53492812 + AT_rich Low_complexity Low_complexity 1 48 0 6119 235 78 24 chr11 97290749 97291136 -53492417 + L1MA4A LINE L1 3 367 -6482 1853 128 68 31 chr11 97291136 97291487 -53492066 - THE1B LTR MaLR 0 364 1 6119 235 78 24 chr11 97291487 97292587 -53490966 + L1MA4A LINE L1 367 1571 -5278 5324 169 32 21 chr11 97292590 97294664 -53488889 + L1MA4A LINE L1 4909 7001 -4 199 175 18 53 chr11 97295468 97295525 -53488028 - L2 LINE L2 -100 3213 3159 765 226 37 6 chr11 97296568 97296732 -53486821 - MER58A DNA MER1_type -9 215 47 213 211 0 0 chr11 97296815 97296867 -53486686 + (TATG)n Simple_repeat Simple_repeat 1 52 0 1649 175 26 23 chr11 97296921 97297230 -53486323 + AluSx SINE Alu 1 310 -2 818 266 9 17 chr11 97297672 97297909 -53485644 + MIR SINE MIR 25 261 -1 2609 39 0 3 chr11 97298206 97298516 -53485037 + AluY SINE Alu 1 309 -2 300 262 36 0 chr11 97298524 97298608 -53484945 + MIR SINE MIR 105 191 -71 384 22 0 0 chr11 97299275 97299320 -53484233 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 57 0 0 chr11 97299618 97299653 -53483900 + AT_rich Low_complexity Low_complexity 1 35 0 301 318 149 5 chr11 97299738 97299939 -53483614 + L1MC/D LINE L1 5260 5489 -2319 763 318 117 31 chr11 97300051 97300089 -53483464 + L2 LINE L2 1705 1738 -1576 14545 159 31 12 chr11 97300089 97302757 -53480796 - Tigger2 DNA MER2_type 0 2718 1 763 318 117 31 chr11 97302757 97303394 -53480159 + L2 LINE L2 1738 2438 -876 9148 184 45 63 chr11 97303453 97304761 -53478792 + Tigger1 DNA MER2_type 3 1333 -1085 297 0 0 0 chr11 97304761 97304794 -53478759 + (CA)n Simple_repeat Simple_repeat 2 34 0 9148 184 45 63 chr11 97304794 97305831 -53477722 + Tigger1 DNA MER2_type 1333 2303 -115 2382 81 0 0 chr11 97305831 97306138 -53477415 - AluY SINE Alu 0 311 5 9148 184 45 63 chr11 97306138 97306252 -53477301 + Tigger1 DNA MER2_type 2303 2418 0 37 52 0 0 chr11 97307264 97307322 -53476231 + AT_rich Low_complexity Low_complexity 1 58 0 201 243 57 57 chr11 97307435 97307505 -53476048 + MIR3 SINE MIR 92 161 -47 319 217 58 0 chr11 97307773 97307842 -53475711 + MIR SINE MIR 178 250 -12 277 316 191 23 chr11 97307888 97308103 -53475450 + L3 LINE CR1 1168 1418 -159 1265 247 111 47 chr11 97309117 97309567 -53473986 + MLT2B1 LTR ERVL 1 479 -41 295 291 13 0 chr11 97309567 97309646 -53473907 + (CATA)n Simple_repeat Simple_repeat 1 80 0 256 153 34 0 chr11 97309647 97309706 -53473847 + MLT2B1 LTR ERVL 460 520 0 34 65 0 0 chr11 97311016 97311078 -53472475 + AT_rich Low_complexity Low_complexity 1 62 0 331 267 91 40 chr11 97311299 97311475 -53472078 - MIR SINE MIR -16 246 62 234 315 67 0 chr11 97311917 97312006 -53471547 - MIR SINE MIR -56 206 112 22 0 0 0 chr11 97312771 97312793 -53470760 + AT_rich Low_complexity Low_complexity 1 22 0 426 152 114 0 chr11 97313024 97313103 -53470450 + L1MC1 LINE L1 6245 6332 -1 306 356 19 10 chr11 97314017 97314121 -53469432 + HAL1 LINE L1 2398 2502 -5 875 168 147 72 chr11 97314253 97314468 -53469085 + L1MA8 LINE L1 5533 5777 -514 180 0 0 0 chr11 97314468 97314488 -53469065 + (TA)n Simple_repeat Simple_repeat 1 20 0 875 168 147 72 chr11 97314488 97314565 -53468988 + L1MA8 LINE L1 5777 5847 -444 708 214 11 22 chr11 97315017 97315188 -53468365 + L1PA16 LINE L1 5971 6141 -25 201 39 0 0 chr11 97315188 97315214 -53468339 + (TTAAA)n Simple_repeat Simple_repeat 3 28 0 3635 151 9 27 chr11 97316650 97317288 -53466265 - Tigger3b DNA MER2_type -603 628 2 451 260 24 97 chr11 97317398 97317696 -53465857 - L1MC/D LINE L1 -450 5671 5462 23 33 0 0 chr11 97317723 97317753 -53465800 + AT_rich Low_complexity Low_complexity 1 30 0 473 353 212 13 chr11 97319164 97319716 -53463837 - L2 LINE L2 -952 2362 1701 206 267 0 0 chr11 97319728 97319788 -53463765 + MIR SINE MIR 187 246 -16 354 287 144 22 chr11 97319888 97320069 -53463484 - MIR SINE MIR -40 222 20 914 167 158 0 chr11 97321327 97321549 -53462004 + Charlie5 DNA MER1_type 2366 2622 0 274 360 103 30 chr11 97321637 97321840 -53461713 + L2 LINE L2 2807 3024 -248 1727 143 0 59 chr11 97321885 97322192 -53461361 - AluJb SINE Alu -23 289 1 462 150 157 20 chr11 97322782 97322929 -53460624 + Charlie1 DNA MER1_type 2514 2680 -81 1151 71 13 0 chr11 97323059 97323214 -53460339 - L1PA10 LINE L1 -2 6166 6010 5072 99 11 3 chr11 97323214 97323999 -53459554 + L1PA10 LINE L1 5181 5970 -198 658 202 93 39 chr11 97323999 97324256 -53459297 + MER63 DNA MER1_type 791 1061 0 4170 103 16 0 chr11 97324805 97325417 -53458136 - L1PA7 LINE L1 -1718 4428 3807 * 6843 64 12 0 chr11 97325404 97326971 -53456582 + L1PA7 LINE L1 4426 6151 -3 3823 106 2 3 chr11 97327135 97327701 -53455852 - L1P LINE L1 -1012 5134 4570 225 345 0 48 chr11 97327743 97327827 -53455726 - L2 LINE L2 -671 2643 2564 1620 205 37 13 chr11 97327933 97328314 -53455239 + MLT1B LTR MaLR 1 390 0 349 270 24 56 chr11 97328400 97328526 -53455027 + MIR SINE MIR 10 131 -131 587 254 124 10 chr11 97328709 97328902 -53454651 + MIR SINE MIR 48 262 0 37 62 0 0 chr11 97329939 97330004 -53453549 + AT_rich Low_complexity Low_complexity 1 65 0 24 0 0 0 chr11 97330740 97330764 -53452789 + AT_rich Low_complexity Low_complexity 1 24 0 189 310 157 35 chr11 97330975 97331236 -53452317 - L2 LINE L2 -834 2480 2188 809 123 13 32 chr11 97331332 97331486 -53452067 + L1MA5A LINE L1 6147 6297 0 490 292 84 20 chr11 97331511 97331713 -53451840 - MIR SINE MIR 0 262 48 197 300 105 58 chr11 97331809 97331999 -53451554 - L2 LINE L2 -1297 2017 1819 22 0 0 0 chr11 97332890 97332912 -53450641 + AT_rich Low_complexity Low_complexity 1 22 0 361 237 144 10 chr11 97333031 97333128 -53450425 + L1MA6 LINE L1 199 308 -7257 3612 217 30 23 chr11 97333134 97334287 -53449266 + L1MA6 LINE L1 3410 4569 -2996 1105 189 67 51 chr11 97334308 97334621 -53448932 + L1MA6 LINE L1 4736 5053 -2512 2554 174 10 12 chr11 97334625 97335130 -53448423 + L1MA6 LINE L1 6187 6690 -875 11912 162 30 5 chr11 97335130 97337244 -53446309 - Tigger1 DNA MER2_type -1 2417 252 2184 150 62 5 chr11 97337248 97337668 -53445885 + L1MA6 LINE L1 7185 7628 -91 692 227 62 0 chr11 97337666 97337860 -53445693 + L1ME1 LINE L1 5369 5574 -785 * 1528 182 6 52 chr11 97337942 97338266 -53445287 + AluJb SINE Alu 3 311 -1 1210 53 0 0 chr11 97338276 97338428 -53445125 + L1PA3 LINE L1 6004 6155 0 363 206 64 77 chr11 97338444 97338612 -53444941 + L1ME1 LINE L1 5595 5764 -476 1063 270 60 13 chr11 97339106 97339487 -53444066 + L1ME1 LINE L1 5750 6148 -18 400 219 55 6 chr11 97339672 97339814 -53443739 + L1M4 LINE L1 5209 5357 -830 33 0 0 0 chr11 97339833 97339866 -53443687 + AT_rich Low_complexity Low_complexity 1 33 0 431 281 111 12 chr11 97341202 97341373 -53442180 + MIR SINE MIR 20 207 -55 31 0 0 0 chr11 97341551 97341582 -53441971 + AT_rich Low_complexity Low_complexity 1 31 0 1687 172 17 7 chr11 97342370 97342693 -53440860 + AluSx SINE Alu 2 312 0 2173 82 0 34 chr11 97342695 97342987 -53440566 + AluY SINE Alu 17 298 -13 26 0 0 0 chr11 97343044 97343070 -53440483 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr11 97343138 97343161 -53440392 + AT_rich Low_complexity Low_complexity 1 23 0 2408 116 19 14 chr11 97343172 97343534 -53440019 + THE1B LTR MaLR 1 364 0 9125 134 77 5 chr11 97343534 97345007 -53438546 + THE1B-int LTR MaLR 1 1580 0 2428 127 17 11 chr11 97345007 97345369 -53438184 + THE1B LTR MaLR 1 364 0 40 59 0 0 chr11 97345468 97345536 -53438017 + AT_rich Low_complexity Low_complexity 1 68 0 243 0 0 0 chr11 97345861 97345888 -53437665 + (T)n Simple_repeat Simple_repeat 1 27 0 3983 145 10 2 chr11 97346097 97346704 -53436849 + LTR9 LTR ERV1 1 612 0 26113 141 111 112 chr11 97346709 97353656 -53429897 + HUERS-P3b LTR ERV1 5 6946 -472 799 175 18 6 chr11 97353661 97353832 -53429721 + LTR9-int LTR ERV1 2388 2560 -2455 433 181 105 0 chr11 97353838 97353943 -53429610 + LTR9-int LTR ERV1 4203 4318 -562 1389 126 5 0 chr11 97354102 97354300 -53429253 + LTR9-int LTR ERV1 8720 8918 -1 4088 144 3 0 chr11 97354300 97354910 -53428643 + LTR9 LTR ERV1 1 612 0 1243 236 22 42 chr11 97355099 97355455 -53428098 + MLT1A1 LTR MaLR 15 363 -2 200 311 95 0 chr11 97355806 97355880 -53427673 + MIR SINE MIR 72 152 -110 300 239 30 0 chr11 97356256 97356323 -53427230 - L2 LINE L2 -8 3305 3237 232 349 19 28 chr11 97356559 97356665 -53426888 - MIR SINE MIR -145 117 13 1012 211 140 99 chr11 97356873 97357367 -53426186 - MLT2B2 LTR ERVL -1 514 1 795 260 39 10 chr11 97357963 97358167 -53425386 + MER20 DNA MER1_type 2 211 -8 1510 177 50 106 chr11 97358368 97358848 -53424705 - MLT1C LTR MaLR -7 460 8 209 294 59 12 chr11 97358859 97358944 -53424609 + MIR SINE MIR 100 188 -74 189 74 0 0 chr11 97359058 97359085 -53424468 + (CA)n Simple_repeat Simple_repeat 2 28 0 794 262 35 0 chr11 97360638 97360840 -53422713 + MER63A DNA MER1_type 2 210 0 191 374 0 12 chr11 97361061 97361144 -53422409 - L2 LINE L2 -4 3268 3187 198 244 77 39 chr11 97361583 97361661 -53421892 + MIR3 SINE MIR 83 163 -45 317 354 101 5 chr11 97361669 97361878 -53421675 - MIR SINE MIR 0 262 34 206 118 0 0 chr11 97362570 97362604 -53420949 + (T)n Simple_repeat Simple_repeat 1 34 0 659 325 48 12 chr11 97362636 97362888 -53420665 + MIR SINE MIR 2 262 0 630 267 65 94 chr11 97362928 97363096 -53420457 - L2 LINE L2 0 3313 3142 2294 105 10 0 chr11 97363096 97363402 -53420151 + AluSg SINE Alu 1 309 -1 630 267 65 94 chr11 97363402 97363726 -53419827 - L2 LINE L2 -171 3142 2822 2792 194 15 7 chr11 97363726 97364319 -53419234 + L1PB4 LINE L1 5550 6147 -9 630 267 65 94 chr11 97364319 97364410 -53419143 - L2 LINE L2 -491 2822 2730 21 0 0 0 chr11 97364766 97364787 -53418766 + AT_rich Low_complexity Low_complexity 1 21 0 2008 135 7 0 chr11 97365737 97366062 -53417491 - AluSx SINE Alu 0 329 3 290 273 65 43 chr11 97367140 97367279 -53416274 + MIR SINE MIR 75 216 -46 377 308 74 21 chr11 97367439 97367668 -53415885 + MIR SINE MIR 3 260 -2 368 323 123 0 chr11 97368075 97368205 -53415348 + MIR SINE MIR 2 147 -115 22 80 0 0 chr11 97368222 97368272 -53415281 + AT_rich Low_complexity Low_complexity 1 50 0 258 317 67 34 chr11 97369952 97369968 -53413585 + L2 LINE L2 3078 3092 -221 243 0 0 0 chr11 97369968 97369995 -53413558 + (CA)n Simple_repeat Simple_repeat 2 28 0 258 317 67 34 chr11 97369995 97370186 -53413367 + L2 LINE L2 3092 3292 -21 2430 204 44 41 chr11 97370326 97370959 -53412594 - L1MB4 LINE L1 0 6180 5546 200 237 0 53 chr11 97371808 97371884 -53411669 + (TAAA)n Simple_repeat Simple_repeat 2 73 0 464 314 29 0 chr11 97371994 97372134 -53411419 + MIR3 SINE MIR 17 160 -48 199 333 27 0 chr11 97373057 97373132 -53410421 - L3 LINE CR1 -17 1560 1484 538 218 9 0 chr11 97373386 97373496 -53410057 + MER45A DNA AcHobo 68 178 0 400 255 10 10 chr11 97373581 97373683 -53409870 - L3 LINE CR1 -458 1119 1018 460 287 83 92 chr11 97373713 97374010 -53409543 + LTR33 LTR ERVL 23 282 -241 1896 160 0 0 chr11 97374010 97374297 -53409256 - AluSx SINE Alu -13 299 13 460 287 83 92 chr11 97374297 97374394 -53409159 + LTR33 LTR ERVL 282 378 -145 238 311 23 68 chr11 97374701 97374833 -53408720 - L2 LINE L2 -4 3309 3184 496 276 115 6 chr11 97374845 97375019 -53408534 - L2 LINE L2 -566 2748 2556 200 182 0 0 chr11 97375607 97375640 -53407913 + GA-rich Low_complexity Low_complexity 1 33 0 30 45 0 0 chr11 97376004 97376048 -53407505 + AT_rich Low_complexity Low_complexity 1 44 0 11236 188 30 25 chr11 97376516 97378736 -53404817 + L1MA3 LINE L1 16 2224 -5341 1117 23 0 0 chr11 97378736 97378867 -53404686 + L1PA3 LINE L1 6025 6155 0 11236 188 30 25 chr11 97378867 97381148 -53402405 + L1MA3 LINE L1 2224 5203 -2362 694 65 43 0 chr11 97381148 97381241 -53402312 - L1PA8 LINE L1 -10 6162 6066 7017 171 48 2 chr11 97381564 97381764 -53401789 + L1MA3 LINE L1 5194 5383 -2341 2140 97 0 24 chr11 97381764 97382062 -53401491 + AluY SINE Alu 1 291 -20 7017 171 48 2 chr11 97382062 97384249 -53399304 + L1MA3 LINE L1 5383 7696 -28 198 247 0 0 chr11 97384262 97384339 -53399214 + (TA)n Simple_repeat Simple_repeat 2 78 0 4481 190 23 30 chr11 97384367 97385367 -53398186 + L1MA9 LINE L1 5282 6274 -38 23 33 0 0 chr11 97385602 97385632 -53397921 + AT_rich Low_complexity Low_complexity 1 30 0 1751 165 10 10 chr11 97386049 97386346 -53397207 + AluSx SINE Alu 1 297 -15 384 281 66 16 chr11 97387180 97387301 -53396252 + L2 LINE L2 3187 3313 0 21 36 0 0 chr11 97387327 97387355 -53396198 + AT_rich Low_complexity Low_complexity 1 28 0 295 345 50 34 chr11 97388614 97388733 -53394820 + MIR SINE MIR 17 137 -71 333 68 0 0 chr11 97388887 97388931 -53394622 + (TA)n Simple_repeat Simple_repeat 1 44 0 342 0 0 0 chr11 97389327 97389365 -53394188 + (CA)n Simple_repeat Simple_repeat 2 39 0 22 80 0 0 chr11 97389665 97389715 -53393838 + AT_rich Low_complexity Low_complexity 1 50 0 1229 228 21 21 chr11 97390553 97390834 -53392719 + AluJo SINE Alu 2 282 -30 1950 98 0 92 chr11 97390945 97391272 -53392281 - AluSq SINE Alu -16 297 1 272 271 98 34 chr11 97392658 97392894 -53390659 + L1ME LINE L1 5629 5879 -242 192 302 0 0 chr11 97392895 97392948 -53390605 + MIR SINE MIR 209 261 -1 23 0 0 0 chr11 97392979 97393002 -53390551 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr11 97393607 97393627 -53389926 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr11 97393709 97393730 -53389823 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 97395068 97395098 -53388455 + AT_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr11 97395184 97395216 -53388337 + AT_rich Low_complexity Low_complexity 1 32 0 370 314 30 72 chr11 97395397 97395633 -53387920 - MIR SINE MIR -16 246 21 24 0 0 0 chr11 97395781 97395805 -53387748 + AT_rich Low_complexity Low_complexity 1 24 0 331 341 114 5 chr11 97396538 97396742 -53386811 + MIR SINE MIR 39 262 0 1045 139 55 38 chr11 97398393 97398630 -53384923 + L1MA9 LINE L1 6067 6307 -5 427 339 102 5 chr11 97398883 97399098 -53384455 - MIR SINE MIR -15 247 8 252 86 0 0 chr11 97400787 97400822 -53382731 + (T)n Simple_repeat Simple_repeat 1 35 0 1063 266 66 101 chr11 97400884 97401827 -53381726 + L1MC4a LINE L1 6115 7024 -784 828 166 0 17 chr11 97401827 97402008 -53381545 + GA-rich Low_complexity Low_complexity 3 180 0 402 314 156 43 chr11 97402113 97402460 -53381093 + L1MC4 LINE L1 7288 7673 -369 487 279 157 22 chr11 97402511 97402823 -53380730 + L1MC4 LINE L1 7689 8042 0 205 275 53 92 chr11 97404317 97404448 -53379105 + MIR SINE MIR 103 228 -34 896 214 5 31 chr11 97404807 97405031 -53378522 - L1MA9 LINE L1 -38 6274 6057 5414 224 53 4 chr11 97405151 97405535 -53378018 + L1PA14 LINE L1 4008 4372 -1789 327 49 0 0 chr11 97405535 97405576 -53377977 + (CA)n Simple_repeat Simple_repeat 2 42 0 5414 224 53 4 chr11 97405576 97407103 -53376450 + L1PA14 LINE L1 4372 6011 -150 21 0 0 0 chr11 97408266 97408287 -53375266 + AT_rich Low_complexity Low_complexity 1 21 0 232 373 97 8 chr11 97409760 97409894 -53373659 + L2 LINE L2 3122 3267 -5 1990 106 3 36 chr11 97410291 97410593 -53372960 - AluY SINE Alu -19 292 1 270 0 0 0 chr11 97410771 97410801 -53372752 + (TG)n Simple_repeat Simple_repeat 2 31 0 207 69 0 0 chr11 97411496 97411525 -53372028 + (TG)n Simple_repeat Simple_repeat 1 29 0 351 270 146 0 chr11 97412070 97412207 -53371346 + MIR SINE MIR 95 251 -11 219 88 0 0 chr11 97412532 97412566 -53370987 + (CA)n Simple_repeat Simple_repeat 1 34 0 306 378 82 44 chr11 97412610 97412925 -53370628 + L2 LINE L2 2939 3265 -7 23 33 0 0 chr11 97413338 97413368 -53370185 + AT_rich Low_complexity Low_complexity 1 30 0 1037 149 88 10 chr11 97414948 97415142 -53368411 + MER3 DNA MER1_type 1 209 0 381 325 79 16 chr11 97416789 97416915 -53366638 - L2 LINE L2 0 3272 3139 2262 70 7 0 chr11 97416947 97417246 -53366307 + AluY SINE Alu 4 304 -7 419 295 13 51 chr11 97417292 97417448 -53366105 + MIR SINE MIR 112 261 -1 271 330 136 42 chr11 97417510 97417746 -53365807 - L2 LINE L2 -189 3083 2826 25 75 0 0 chr11 97418191 97418244 -53365309 + AT_rich Low_complexity Low_complexity 1 53 0 296 250 113 12 chr11 97418330 97418490 -53365063 - MER114 LTR ERV -185 463 288 28 0 0 0 chr11 97418653 97418681 -53364872 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr11 97418779 97418816 -53364737 + AT_rich Low_complexity Low_complexity 1 37 0 610 257 71 4 chr11 97418822 97419048 -53364505 - MER114 LTR ERV -349 299 59 1372 233 65 72 chr11 97419073 97419584 -53363969 - Charlie1b DNA MER1_type -1 522 16 31 44 0 0 chr11 97419842 97419887 -53363666 + AT_rich Low_complexity Low_complexity 1 45 0 842 318 32 4 chr11 97420368 97420704 -53362849 - L2 LINE L2 -241 3072 2715 363 245 59 29 chr11 97420705 97420807 -53362746 - MIR SINE MIR -3 259 155 396 267 52 0 chr11 97420949 97421065 -53362488 - L2 LINE L2 -586 2728 2607 297 304 49 10 chr11 97421346 97421448 -53362105 - MIR SINE MIR -108 154 49 350 300 92 40 chr11 97422346 97422573 -53360980 - MIR SINE MIR 0 262 24 292 365 13 0 chr11 97422614 97422773 -53360780 + (TCCA)n Simple_repeat Simple_repeat 1 161 0 422 341 0 0 chr11 97422802 97422981 -53360572 + (TTCA)n Simple_repeat Simple_repeat 2 180 0 2060 111 0 7 chr11 97423230 97423540 -53360013 + AluSc SINE Alu 3 310 0 790 296 111 32 chr11 97423676 97424108 -53359445 + MLT1J LTR MaLR 1 466 -45 254 248 40 48 chr11 97424885 97425010 -53358543 + L1MCc LINE L1 83 206 -6217 423 315 84 5 chr11 97425014 97425217 -53358336 + L1MCc LINE L1 1842 2060 -4881 290 207 15 85 chr11 97425250 97425352 -53358201 + L1MCc LINE L1 2040 2567 -4375 2378 255 89 31 chr11 97425383 97425568 -53357985 + L1MCc LINE L1 2888 3061 -3880 1369 188 39 41 chr11 97425568 97425930 -53357623 - MLT1A1 LTR MaLR 0 365 5 2378 255 89 31 chr11 97425930 97427008 -53356545 + L1MCc LINE L1 3061 4188 -2753 460 262 80 48 chr11 97427248 97427435 -53356118 + MLT1J LTR MaLR 1 193 -318 249 277 24 0 chr11 97427479 97427562 -53355991 - LTR33A LTR ERVL -30 493 409 237 130 0 0 chr11 97427626 97427672 -53355881 + LTR66 LTR ERVL 394 439 -171 1095 256 120 17 chr11 97427756 97428115 -53355438 - MSTD LTR MaLR 0 396 1 818 174 66 85 chr11 97428665 97428804 -53354749 + L1MB7 LINE L1 5875 6012 -172 1370 206 45 21 chr11 97428804 97429091 -53354462 + AluJo SINE Alu 3 296 -16 818 174 66 85 chr11 97429091 97429208 -53354345 + L1MB7 LINE L1 6012 6130 -54 632 269 118 44 chr11 97430584 97430967 -53352586 - MLT1J1 LTR MaLR -21 425 15 3244 244 113 48 chr11 97431449 97431685 -53351868 + L1MC4 LINE L1 6458 6677 -1365 2677 154 13 7 chr11 97431685 97432133 -53351420 - L1PA15 LINE L1 -8 6157 5707 3244 244 113 48 chr11 97432133 97432419 -53351134 + L1MC4 LINE L1 6677 6943 -1099 2975 73 110 2 chr11 97432419 97432856 -53350697 + LTR19A LTR ERV1 1 484 -2 3244 244 113 48 chr11 97432856 97433671 -53349882 + L1MC4 LINE L1 6943 7903 -139 1279 247 101 42 chr11 97433671 97434148 -53349405 + MLT1D LTR MaLR 1 505 0 3244 244 113 48 chr11 97434148 97434283 -53349270 + L1MC4 LINE L1 7903 8028 -14 405 0 0 0 chr11 97434773 97434818 -53348735 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 298 387 46 19 chr11 97435249 97435572 -53347981 - L2 LINE L2 -798 2516 2185 686 314 6 0 chr11 97435747 97435922 -53347631 - MER5A DNA MER1_type -1 188 13 571 253 146 0 chr11 97435957 97436115 -53347438 + MER5A DNA MER1_type 9 189 0 338 261 50 34 chr11 97436230 97436349 -53347204 + MIR SINE MIR 94 214 -48 229 258 125 39 chr11 97436847 97436975 -53346578 + MIR SINE MIR 123 261 -1 2216 84 3 0 chr11 97437568 97437891 -53345662 - AluY SINE Alu 0 311 13 1069 185 15 50 chr11 97438506 97438766 -53344787 + L1MA10 LINE L1 6040 6290 -44 1284 126 49 31 chr11 97438768 97438991 -53344562 + MER30 DNA MER1_type 4 230 0 577 271 96 0 chr11 97439076 97439293 -53344260 - MIR SINE MIR -6 256 19 2282 104 0 3 chr11 97440908 97441217 -53342336 + AluY SINE Alu 1 308 -3 434 200 140 53 chr11 97441236 97441405 -53342148 + L1MD3 LINE L1 7607 7966 0 277 282 0 0 chr11 97441623 97441694 -53341859 - MIR SINE MIR -110 152 82 366 312 152 15 chr11 97442059 97442264 -53341289 + MIR SINE MIR 10 238 -24 289 267 47 0 chr11 97442363 97442449 -53341104 + Charlie2 DNA MER1_type 236 325 -2537 994 234 67 42 chr11 97442450 97442899 -53340654 + Charlie2 DNA MER1_type 1880 2339 -523 21 71 0 0 chr11 97443012 97443054 -53340499 + AT_rich Low_complexity Low_complexity 1 42 0 2156 107 4 0 chr11 97443153 97443433 -53340120 + AluSp SINE Alu 1 281 -32 5574 157 68 31 chr11 97443728 97444914 -53338639 + Tigger3b DNA MER2_type 1 1230 -1 21 57 0 0 chr11 97444979 97445014 -53338539 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr11 97445917 97445941 -53337612 + AT_rich Low_complexity Low_complexity 1 24 0 441 270 29 15 chr11 97446000 97446137 -53337416 + Charlie1a DNA MER1_type 1 139 -1316 2353 184 72 33 chr11 97446257 97446840 -53336713 + L1MD1 LINE L1 5523 6128 -114 1125 225 22 63 chr11 97446838 97447273 -53336280 - L1M LINE L1 -789 5357 4955 * 576 116 35 0 chr11 97447273 97447359 -53336194 + AluY SINE Alu 1 89 -229 40855 38 22 2 chr11 97447363 97453430 -53330123 + L1PA4 LINE L1 1 6189 0 1487 132 5 5 chr11 97453431 97453651 -53329902 + AluY SINE Alu 80 299 -12 1354 219 16 0 chr11 97453651 97453957 -53329596 - L1 LINE L1 -1180 4966 4656 378 243 10 0 chr11 97453960 97454063 -53329490 + L1 LINE L1 4190 4293 -1853 1338 211 22 7 chr11 97454086 97454361 -53329192 - AluJo SINE Alu -9 303 25 1292 196 14 28 chr11 97454379 97454737 -53328816 + L1 LINE L1 4278 4630 -1516 272 241 56 0 chr11 97457576 97457684 -53325869 + L1M4 LINE L1 1016 1129 -5413 * 4203 169 41 27 chr11 97457666 97459020 -53324533 + L1M2 LINE L1 4389 5768 -523 21 0 0 0 chr11 97461287 97461308 -53322245 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 97462019 97462043 -53321510 + AT_rich Low_complexity Low_complexity 1 24 0 276 189 0 0 chr11 97462362 97462415 -53321138 - MLT1E1 LTR MaLR -3 651 599 2123 97 0 14 chr11 97462422 97462710 -53320843 + AluY SINE Alu 1 284 -27 877 114 0 0 chr11 97462951 97463083 -53320470 + MER58 DNA MER1_type 2287 2418 -2 24 32 0 0 chr11 97463810 97463841 -53319712 + AT_rich Low_complexity Low_complexity 1 31 0 198 288 85 0 chr11 97469395 97469454 -53314099 - L2 LINE L2 -22 3250 3187 1729 136 0 101 chr11 97469516 97469861 -53313692 - AluSq SINE Alu -3 310 1 441 36 0 0 chr11 97469876 97469931 -53313622 + (TG)n Simple_repeat Simple_repeat 2 56 0 22 0 0 0 chr11 97470352 97470374 -53313179 + AT_rich Low_complexity Low_complexity 1 22 0 577 170 0 54 chr11 97470376 97470488 -53313065 - FLAM_C SINE Alu -25 118 13 978 153 90 50 chr11 97470488 97470710 -53312843 + MER41B LTR ERV1 12 242 -393 315 0 0 0 chr11 97472279 97472314 -53311239 + (A)n Simple_repeat Simple_repeat 1 35 0 37 52 0 0 chr11 97473748 97473806 -53309747 + AT_rich Low_complexity Low_complexity 1 58 0 11996 27 1 1 chr11 97474994 97476734 -53306819 - L1P1 LINE L1 -516 5639 3901 852 143 21 42 chr11 97476730 97476919 -53306634 - L1PB4 LINE L1 -253 5903 5719 * 396 0 0 0 chr11 97480125 97480169 -53303384 + (GA)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr11 97485942 97485968 -53297585 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr11 97486036 97486059 -53297494 + AT_rich Low_complexity Low_complexity 1 23 0 180 135 0 0 chr11 97488617 97488654 -53294899 + (TATG)n Simple_repeat Simple_repeat 3 39 0 222 270 0 22 chr11 97488935 97489024 -53294529 + A-rich Low_complexity Low_complexity 5 91 0 225 83 0 0 chr11 97489027 97489063 -53294490 + (A)n Simple_repeat Simple_repeat 1 36 0 201 39 0 0 chr11 97489355 97489381 -53294172 + (A)n Simple_repeat Simple_repeat 1 26 0 12758 125 9 27 chr11 97490675 97492756 -53290797 + L1P LINE L1 80 2122 -4024 196 333 61 0 chr11 97493224 97493290 -53290263 - MIR SINE MIR -147 115 46 337 53 193 0 chr11 97493701 97493758 -53289795 + MADE1 DNA Mariner 13 80 0 198 328 103 46 chr11 97494226 97494421 -53289132 - MIR SINE MIR -56 206 1 361 364 39 0 chr11 97494485 97494614 -53288939 - L2 LINE L2 -2 3270 3137 385 301 119 21 chr11 97494818 97494961 -53288592 + MIR3 SINE MIR 31 187 -21 203 88 29 0 chr11 97494964 97494998 -53288555 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 225 128 0 0 chr11 97496233 97496280 -53287273 + (T)n Simple_repeat Simple_repeat 1 47 0 190 352 0 0 chr11 97496695 97496749 -53286804 + L2 LINE L2 3204 3257 -15 2171 106 26 0 chr11 97497651 97497953 -53285600 + AluSg SINE Alu 1 310 0 306 0 0 0 chr11 97498149 97498183 -53285370 + (CA)n Simple_repeat Simple_repeat 2 35 0 226 376 35 0 chr11 97498675 97498760 -53284793 - L2 LINE L2 0 3272 3185 433 323 98 6 chr11 97499289 97499453 -53284100 + MIR SINE MIR 2 180 -82 247 298 116 25 chr11 97499762 97499883 -53283670 + MIR SINE MIR 16 147 -61 284 269 86 11 chr11 97500001 97500094 -53283459 - L3 LINE CR1 -180 1397 1298 217 362 32 0 chr11 97500504 97500598 -53282955 + L2 LINE L2 2614 2710 -604 452 329 69 29 chr11 97500666 97500940 -53282613 - L2 LINE L2 -498 2816 2532 1107 200 33 44 chr11 97500968 97501238 -53282315 + AluJo SINE Alu 16 282 -30 189 74 0 0 chr11 97501243 97501270 -53282283 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 187 288 85 0 chr11 97503671 97503730 -53279823 - L2 LINE L2 -57 3256 3193 * 277 379 159 19 chr11 97503717 97504300 -53279253 + L2 LINE L2 2214 2878 -436 21 0 0 0 chr11 97504490 97504511 -53279042 + AT_rich Low_complexity Low_complexity 1 21 0 2034 136 0 29 chr11 97504919 97505228 -53278325 + AluSx SINE Alu 1 300 -12 254 146 0 0 chr11 97505230 97505271 -53278282 + L2 LINE L2 3265 3305 -8 226 106 43 0 chr11 97505689 97505736 -53277817 + T-rich Low_complexity Low_complexity 2 50 0 225 362 168 13 chr11 97505861 97506010 -53277543 - MIR3 SINE MIR -17 191 20 707 324 84 52 chr11 97507138 97507719 -53275834 + L2 LINE L2 2272 2871 -443 369 0 0 0 chr11 97507908 97507949 -53275604 + (CA)n Simple_repeat Simple_repeat 2 42 0 809 285 92 38 chr11 97508157 97508526 -53275027 - L2 LINE L2 -6 3307 2919 938 133 101 0 chr11 97508954 97509142 -53274411 + THE1B LTR MaLR 158 364 0 40 59 0 0 chr11 97509241 97509309 -53274244 + AT_rich Low_complexity Low_complexity 1 68 0 342 0 0 0 chr11 97509633 97509671 -53273882 + (T)n Simple_repeat Simple_repeat 1 38 0 1059 175 6 0 chr11 97509879 97510062 -53273491 + LTR9 LTR ERV1 1 184 -428 37 62 0 0 chr11 97510665 97510730 -53272823 + AT_rich Low_complexity Low_complexity 1 65 0 24 0 0 0 chr11 97511466 97511490 -53272063 + AT_rich Low_complexity Low_complexity 1 24 0 760 106 33 33 chr11 97512059 97512210 -53271343 + L1MA5A LINE L1 6147 6297 0 494 292 84 20 chr11 97512235 97512437 -53271116 - MIR SINE MIR 0 262 48 22 0 0 0 chr11 97513618 97513640 -53269913 + AT_rich Low_complexity Low_complexity 1 22 0 761 194 45 34 chr11 97513862 97514194 -53269359 + L1MA9 LINE L1 3410 3750 -3815 4770 143 46 4 chr11 97514194 97515028 -53268525 + L1MA3 LINE L1 5409 6277 -28 198 247 0 0 chr11 97515041 97515118 -53268435 + (TA)n Simple_repeat Simple_repeat 1 77 0 4393 194 22 29 chr11 97515146 97516146 -53267407 + L1MA9 LINE L1 6701 7693 -38 23 33 0 0 chr11 97516381 97516411 -53267142 + AT_rich Low_complexity Low_complexity 1 30 0 1751 165 10 10 chr11 97516833 97517130 -53266423 + AluSx SINE Alu 1 297 -15 384 281 66 16 chr11 97517964 97518085 -53265468 + L2 LINE L2 3187 3313 0 295 345 50 34 chr11 97519397 97519516 -53264037 + MIR SINE MIR 17 137 -71 282 193 0 0 chr11 97519649 97519706 -53263847 + (TATG)n Simple_repeat Simple_repeat 3 59 0 360 0 0 0 chr11 97520111 97520151 -53263402 + (CA)n Simple_repeat Simple_repeat 2 41 0 22 80 0 0 chr11 97520451 97520501 -53263052 + AT_rich Low_complexity Low_complexity 1 50 0 1201 228 21 21 chr11 97521339 97521620 -53261933 + AluJo SINE Alu 2 282 -30 1143 201 3 72 chr11 97521744 97522078 -53261475 + L1MA3 LINE L1 4893 5203 -2362 694 65 43 0 chr11 97522078 97522171 -53261382 - L1PA8 LINE L1 -10 6162 6066 6813 169 51 7 chr11 97522496 97522696 -53260857 + L1MA3 LINE L1 5194 5384 -2340 2140 97 0 24 chr11 97522696 97522994 -53260559 + AluY SINE Alu 1 291 -20 6813 169 51 7 chr11 97522994 97525183 -53258370 + L1MA3 LINE L1 5384 7696 -28 195 253 0 0 chr11 97525196 97525275 -53258278 + (TA)n Simple_repeat Simple_repeat 2 80 0 4521 185 23 34 chr11 97525303 97526307 -53257246 + L1MA9 LINE L1 5282 6274 -38 23 33 0 0 chr11 97526542 97526572 -53256981 + AT_rich Low_complexity Low_complexity 1 30 0 1717 168 10 10 chr11 97526994 97527291 -53256262 + AluSx SINE Alu 1 297 -15 384 281 66 16 chr11 97528125 97528246 -53255307 + L2 LINE L2 3187 3313 0 295 345 50 34 chr11 97529559 97529678 -53253875 + MIR SINE MIR 17 137 -71 351 192 0 0 chr11 97529811 97529884 -53253669 + (TATG)n Simple_repeat Simple_repeat 3 75 0 378 0 0 0 chr11 97530292 97530334 -53253219 + (CA)n Simple_repeat Simple_repeat 2 43 0 22 80 0 0 chr11 97530634 97530684 -53252869 + AT_rich Low_complexity Low_complexity 1 50 0 1208 232 21 18 chr11 97531522 97531802 -53251751 + AluJo SINE Alu 2 282 -30 1957 98 0 92 chr11 97531913 97532240 -53251313 - AluSq SINE Alu -16 297 1 272 271 98 34 chr11 97533627 97533863 -53249690 + L1ME LINE L1 5629 5879 -242 192 302 0 0 chr11 97533864 97533917 -53249636 + MIR SINE MIR 209 261 -1 23 0 0 0 chr11 97533948 97533971 -53249582 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr11 97534576 97534598 -53248955 + (T)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr11 97534680 97534701 -53248852 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 97536039 97536069 -53247484 + AT_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr11 97536155 97536187 -53247366 + AT_rich Low_complexity Low_complexity 1 32 0 370 314 30 72 chr11 97536368 97536604 -53246949 - MIR SINE MIR -16 246 21 195 42 0 0 chr11 97536731 97536755 -53246798 + (TG)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr11 97536755 97536778 -53246775 + AT_rich Low_complexity Low_complexity 1 23 0 331 341 114 5 chr11 97537511 97537715 -53245838 + MIR SINE MIR 39 262 0 1018 143 55 38 chr11 97539366 97539603 -53243950 + L1MA9 LINE L1 6067 6307 -5 419 350 92 5 chr11 97539856 97540073 -53243480 - MIR SINE MIR -15 247 8 252 86 0 0 chr11 97541762 97541797 -53241756 + (T)n Simple_repeat Simple_repeat 1 35 0 1044 267 66 101 chr11 97541859 97542802 -53240751 + L1MC4a LINE L1 6115 7024 -784 807 171 0 17 chr11 97542802 97542983 -53240570 + GA-rich Low_complexity Low_complexity 3 180 0 22 56 0 0 chr11 97543079 97543115 -53240438 + AT_rich Low_complexity Low_complexity 1 36 0 346 308 163 58 chr11 97543116 97543441 -53240112 + L1MC4 LINE L1 7404 7779 -216 497 279 157 22 chr11 97543476 97543788 -53239765 + L1MC4 LINE L1 7689 8042 0 205 275 53 92 chr11 97545283 97545414 -53238139 + MIR SINE MIR 103 228 -34 896 214 5 31 chr11 97545773 97545997 -53237556 - L1MA9 LINE L1 -38 6274 6057 5426 224 53 4 chr11 97546117 97546501 -53237052 + L1PA14 LINE L1 4008 4372 -1789 309 51 0 0 chr11 97546501 97546540 -53237013 + (CA)n Simple_repeat Simple_repeat 2 40 0 5426 224 53 4 chr11 97546540 97548067 -53235486 + L1PA14 LINE L1 4372 6011 -150 21 0 0 0 chr11 97549230 97549251 -53234302 + AT_rich Low_complexity Low_complexity 1 21 0 232 373 97 8 chr11 97550724 97550858 -53232695 + L2 LINE L2 3122 3267 -5 1996 106 3 33 chr11 97551255 97551556 -53231997 - AluY SINE Alu -19 292 1 324 0 0 0 chr11 97551734 97551770 -53231783 + (TG)n Simple_repeat Simple_repeat 2 37 0 189 74 0 0 chr11 97552465 97552492 -53231061 + (TG)n Simple_repeat Simple_repeat 1 27 0 361 252 133 33 chr11 97553037 97553188 -53230365 + MIR SINE MIR 95 260 -2 183 100 0 0 chr11 97553499 97553529 -53230024 + (CA)n Simple_repeat Simple_repeat 1 30 0 333 381 70 32 chr11 97553573 97553888 -53229665 + L2 LINE L2 2939 3265 -7 23 33 0 0 chr11 97554302 97554332 -53229221 + AT_rich Low_complexity Low_complexity 1 30 0 1037 149 88 10 chr11 97555915 97556109 -53227444 + MER3 DNA MER1_type 1 209 0 381 325 79 16 chr11 97557756 97557882 -53225671 - L2 LINE L2 0 3272 3139 2262 70 7 0 chr11 97557914 97558213 -53225340 + AluY SINE Alu 4 304 -7 419 284 19 52 chr11 97558259 97558414 -53225139 + MIR SINE MIR 112 261 -1 271 330 136 42 chr11 97558476 97558712 -53224841 - L2 LINE L2 -189 3083 2826 32 67 0 0 chr11 97559157 97559217 -53224336 + AT_rich Low_complexity Low_complexity 1 60 0 296 250 113 12 chr11 97559296 97559456 -53224097 - MER114 LTR ERV -185 463 288 28 0 0 0 chr11 97559619 97559647 -53223906 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr11 97559745 97559782 -53223771 + AT_rich Low_complexity Low_complexity 1 37 0 571 263 80 5 chr11 97559788 97560012 -53223541 - MER114 LTR ERV -349 299 59 1372 233 65 72 chr11 97560037 97560548 -53223005 - Charlie1b DNA MER1_type -1 522 16 33 80 0 0 chr11 97560806 97560881 -53222672 + AT_rich Low_complexity Low_complexity 1 75 0 842 318 32 4 chr11 97561332 97561668 -53221885 - L2 LINE L2 -241 3072 2715 363 245 59 29 chr11 97561669 97561771 -53221782 - MIR SINE MIR -3 259 155 396 267 52 0 chr11 97561913 97562029 -53221524 - L2 LINE L2 -586 2728 2607 24 0 0 0 chr11 97562262 97562286 -53221267 + AT_rich Low_complexity Low_complexity 1 24 0 297 304 49 10 chr11 97562310 97562412 -53221141 - MIR SINE MIR -108 154 49 350 300 92 40 chr11 97563309 97563536 -53220017 - MIR SINE MIR 0 262 24 302 379 11 0 chr11 97563578 97563755 -53219798 + (TCCA)n Simple_repeat Simple_repeat 2 180 0 422 341 0 0 chr11 97563765 97563944 -53219609 + (TTCA)n Simple_repeat Simple_repeat 2 180 0 2045 114 0 7 chr11 97564193 97564503 -53219050 + AluSc SINE Alu 3 310 0 781 296 111 32 chr11 97564639 97565071 -53218482 + MLT1J LTR MaLR 1 466 -45 254 248 40 48 chr11 97565848 97565973 -53217580 + L1MCc LINE L1 83 206 -6217 423 315 84 5 chr11 97565977 97566180 -53217373 + L1MCc LINE L1 1842 2060 -4881 290 207 15 85 chr11 97566214 97566316 -53217237 + L1MCc LINE L1 2040 2567 -4375 2332 253 90 33 chr11 97566347 97566532 -53217021 + L1MCc LINE L1 2888 3061 -3880 1369 188 39 41 chr11 97566532 97566894 -53216659 - MLT1A1 LTR MaLR 0 365 5 2332 253 90 33 chr11 97566894 97567973 -53215580 + L1MCc LINE L1 3061 4188 -2753 460 262 80 48 chr11 97568213 97568400 -53215153 + MLT1J LTR MaLR 1 193 -318 249 277 24 0 chr11 97568444 97568527 -53215026 - LTR33A LTR ERVL -30 493 409 231 130 0 0 chr11 97568603 97568649 -53214904 + LTR66 LTR ERVL 394 439 -171 1069 254 123 17 chr11 97568736 97569094 -53214459 - MSTD LTR MaLR 0 396 1 842 177 61 85 chr11 97569644 97569784 -53213769 + L1MB7 LINE L1 5875 6012 -172 1370 206 45 21 chr11 97569784 97570071 -53213482 + AluJo SINE Alu 3 296 -16 842 177 61 85 chr11 97570071 97570188 -53213365 + L1MB7 LINE L1 6012 6130 -54 224 188 53 6 chr11 97571335 97571512 -53212041 + (TA)n Simple_repeat Simple_repeat 1 185 0 216 0 0 0 chr11 97571629 97571653 -53211900 + (A)n Simple_repeat Simple_repeat 1 24 0 219 139 0 0 chr11 97572065 97572101 -53211452 + (A)n Simple_repeat Simple_repeat 1 36 0 4822 218 118 77 chr11 97572563 97573129 -53210424 + L1MD1 LINE L1 2439 2980 -3262 2273 92 0 13 chr11 97573129 97573435 -53210118 + AluSq SINE Alu 5 306 -7 4822 218 118 77 chr11 97573435 97575008 -53208545 + L1MD1 LINE L1 2980 4486 -1756 7375 37 5 2 chr11 97575008 97576333 -53207220 + L1PA4 LINE L1 4830 6153 -2 4822 218 118 77 chr11 97576333 97577119 -53206434 + L1MD1 LINE L1 4486 5238 -1004 189 0 0 0 chr11 97577119 97577140 -53206413 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 4822 218 118 77 chr11 97577140 97577867 -53205686 + L1MD1 LINE L1 5238 6241 -1 230 231 0 0 chr11 97578798 97578850 -53204703 + L2 LINE L2 2704 2755 -559 406 304 0 0 chr11 97578871 97578996 -53204557 + L2 LINE L2 2946 3070 -243 217 326 10 31 chr11 97579075 97579173 -53204380 + L2 LINE L2 3217 3312 -1 222 303 156 28 chr11 97579200 97579309 -53204244 - L2 LINE L2 -9 3263 3141 1045 311 22 24 chr11 97579768 97580183 -53203370 - L2 LINE L2 -2001 1313 900 207 280 54 86 chr11 97580580 97580673 -53202880 + L3 LINE CR1 1142 1231 -346 198 216 39 0 chr11 97580767 97580818 -53202735 + MIR SINE MIR 78 130 -132 233 262 279 17 chr11 97581614 97581786 -53201767 + MIR SINE MIR 31 247 -15 257 287 77 42 chr11 97581895 97582038 -53201515 - L2 LINE L2 -3 3310 3163 390 288 92 27 chr11 97582214 97582398 -53201155 + MIR SINE MIR 1 196 -66 448 288 98 42 chr11 97582466 97582824 -53200729 + L2 LINE L2 2600 2977 -337 2260 54 7 0 chr11 97582860 97583178 -53200375 - AluY SINE Alu 0 320 1 237 348 121 23 chr11 97583627 97583883 -53199670 - L2 LINE L2 -438 2876 2596 2783 3 0 16 chr11 97585696 97586011 -53197542 + AluY SINE Alu 1 310 -1 2110 109 3 7 chr11 97586877 97587179 -53196374 + AluSc SINE Alu 3 303 -6 252 0 0 0 chr11 97587298 97587326 -53196227 + (A)n Simple_repeat Simple_repeat 1 28 0 297 180 34 0 chr11 97587401 97587490 -53196063 + (TA)n Simple_repeat Simple_repeat 2 93 0 283 366 84 8 chr11 97588082 97588213 -53195340 - MIR3 SINE MIR -66 142 2 231 329 0 0 chr11 97589467 97589549 -53194004 + GA-rich Low_complexity Low_complexity 2 83 0 266 267 0 35 chr11 97591485 97591571 -53191982 + (CATA)n Simple_repeat Simple_repeat 4 86 0 2426 77 6 22 chr11 97591866 97592228 -53191325 + L1MA1 LINE L1 5947 6302 0 23 0 0 0 chr11 97592228 97592251 -53191302 + AT_rich Low_complexity Low_complexity 1 23 0 226 373 63 28 chr11 97592440 97592582 -53190971 + MIR SINE MIR 1 147 -115 212 293 47 47 chr11 97593213 97593319 -53190234 + MIR SINE MIR 31 136 -72 226 192 52 6 chr11 97593545 97593724 -53189829 + (TA)n Simple_repeat Simple_repeat 1 187 0 208 382 15 0 chr11 97594436 97594504 -53189049 + L3b LINE CR1 1506 1574 -9 373 291 138 16 chr11 97594913 97595102 -53188451 - MIR SINE MIR -43 219 8 429 245 129 0 chr11 97595402 97595549 -53188004 + MIR SINE MIR 97 262 0 21 36 0 0 chr11 97595895 97595923 -53187630 + AT_rich Low_complexity Low_complexity 1 28 0 2768 194 14 7 chr11 97596187 97596750 -53186803 - L1MC3 LINE L1 -2 7783 7217 1797 133 3 48 chr11 97596808 97597102 -53186451 + AluSq SINE Alu 1 281 -32 220 324 14 27 chr11 97597594 97597668 -53185885 - MIR SINE MIR -111 97 25 325 315 122 33 chr11 97598156 97598369 -53185184 - MIR SINE MIR -11 251 20 428 296 75 30 chr11 97599224 97599423 -53184130 - L2 LINE L2 0 3313 3106 1911 119 0 37 chr11 97599757 97600051 -53183502 + AluSg SINE Alu 1 283 -27 204 97 0 0 chr11 97600052 97600083 -53183470 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 344 254 118 9 chr11 97600321 97600431 -53183122 + MER5A DNA MER1_type 50 171 -18 231 114 0 0 chr11 97600537 97600572 -53182981 + (TG)n Simple_repeat Simple_repeat 1 35 0 1964 122 0 21 chr11 97600960 97601301 -53182252 + AluSg SINE Alu 1 335 0 1753 157 43 0 chr11 97601340 97601620 -53181933 + AluSx SINE Alu 1 292 -20 3422 176 44 2 chr11 97603088 97603730 -53179823 + L1PA15 LINE L1 5496 6164 -1 296 310 107 32 chr11 97603862 97604049 -53179504 + MIR SINE MIR 6 206 -56 2158 127 0 0 chr11 97604484 97604791 -53178762 - AluSc SINE Alu -2 307 1 769 226 59 78 chr11 97605218 97605590 -53177963 + MLT1A1 LTR MaLR 1 365 0 1484 189 3 42 chr11 97605701 97606007 -53177546 + AluJb SINE Alu 4 297 -15 2834 77 22 10 chr11 97606187 97606590 -53176963 - L1PA7 LINE L1 -4 6150 5743 474 231 131 0 chr11 97607881 97608011 -53175542 + MIR SINE MIR 100 246 -16 24 67 0 0 chr11 97609423 97609468 -53174085 + AT_rich Low_complexity Low_complexity 1 45 0 231 235 12 62 chr11 97609494 97609575 -53173978 + MIR SINE MIR 176 252 -10 217 304 0 0 chr11 97609597 97609653 -53173900 - MIR SINE MIR -120 142 87 392 267 52 0 chr11 97609839 97609955 -53173598 + MIR3 SINE MIR 33 154 -54 371 313 116 58 chr11 97609975 97610199 -53173354 - MIR SINE MIR -6 256 20 225 260 46 104 chr11 97610482 97610655 -53172898 - MIR SINE MIR -14 248 86 258 286 52 0 chr11 97611958 97612035 -53171518 + L2 LINE L2 3233 3313 0 297 28 0 0 chr11 97612620 97612656 -53170897 - L1PA6 LINE L1 -9 6145 6110 23 33 0 0 chr11 97612917 97612947 -53170606 + AT_rich Low_complexity Low_complexity 1 30 0 456 286 196 11 chr11 97613894 97614083 -53169470 - MIR SINE MIR -11 251 28 392 292 52 60 chr11 97615255 97615505 -53168048 + MER112 DNA MER1_type 2 249 -11 252 0 0 0 chr11 97615549 97615577 -53167976 + (TG)n Simple_repeat Simple_repeat 1 28 0 182 33 0 33 chr11 97616368 97616381 -53167172 + (TA)n Simple_repeat Simple_repeat 2 14 -16 2151 108 0 3 chr11 97616381 97616677 -53166876 + AluSg SINE Alu 1 295 -15 182 33 0 33 chr11 97616677 97616693 -53166860 + (TA)n Simple_repeat Simple_repeat 14 30 0 267 368 91 24 chr11 97616810 97617209 -53166344 - L3 LINE CR1 -73 1504 1115 718 181 52 93 chr11 97617224 97617417 -53166136 - AluJo SINE Alu -37 275 91 181 0 69 0 chr11 97617744 97617773 -53165780 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 1403 212 50 20 chr11 97617826 97618123 -53165430 + AluJo SINE Alu 2 307 -5 269 214 0 11 chr11 97618143 97618232 -53165321 + GA-rich Low_complexity Low_complexity 1 88 0 761 116 18 0 chr11 97619443 97619555 -53163998 - AluSp/q SINE Alu -12 301 188 280 358 93 12 chr11 97619748 97619910 -53163643 + MIR3 SINE MIR 22 196 -12 290 271 0 0 chr11 97620575 97620645 -53162908 - L2 LINE L2 0 3313 3244 246 308 0 128 chr11 97621109 97621281 -53162272 - MLT1H LTR MaLR -110 439 290 228 323 12 31 chr11 97625796 97625957 -53157596 + L1ME4a LINE L1 5961 6118 -3 257 263 0 0 chr11 97626258 97626315 -53157238 + MIR SINE MIR 95 151 -111 312 342 44 9 chr11 97627722 97627836 -53155717 - L2 LINE L2 0 3313 3196 649 84 0 0 chr11 97627893 97627976 -53155577 - L1PA13 LINE L1 -540 5623 5541 3288 106 46 29 chr11 97627978 97628523 -53155030 + L1PA13 LINE L1 5606 6159 -4 1030 79 14 0 chr11 97628530 97628670 -53154883 + AluY SINE Alu 160 301 -10 1330 334 98 37 chr11 97628731 97628824 -53154729 - L2 LINE L2 -452 2862 2776 2167 100 0 0 chr11 97628824 97629113 -53154440 + AluSx SINE Alu 1 289 -23 1330 334 98 37 chr11 97629113 97629837 -53153716 - L2 LINE L2 -538 2776 1995 332 339 60 30 chr11 97630002 97630032 -53153521 - MIR SINE MIR -77 185 157 920 230 25 21 chr11 97630032 97630267 -53153286 - MER46A DNA MER2_type 0 236 1 332 339 60 30 chr11 97630267 97630404 -53153149 - MIR SINE MIR -105 157 13 1779 316 76 25 chr11 97630903 97632076 -53151477 - L2 LINE L2 -9 3304 2073 245 235 174 0 chr11 97632211 97632326 -53151227 + L1ME4a LINE L1 5946 6080 -41 702 261 49 0 chr11 97632562 97632746 -53150807 + MIR SINE MIR 6 198 -64 40 0 0 0 chr11 97633060 97633100 -53150453 + AT_rich Low_complexity Low_complexity 1 40 0 23 54 0 0 chr11 97633112 97633149 -53150404 + AT_rich Low_complexity Low_complexity 1 37 0 456 333 43 19 chr11 97633187 97633397 -53150156 - MIR SINE MIR 0 262 48 324 237 44 35 chr11 97633410 97633524 -53150029 - L1MC/D LINE L1 -1993 5815 5701 513 308 72 18 chr11 97635224 97635445 -53148108 - MIR SINE MIR -2 260 28 1018 218 14 9 chr11 97635646 97635862 -53147691 - MER20 DNA MER1_type -1 218 2 394 277 49 54 chr11 97636905 97637089 -53146464 + MIR SINE MIR 35 217 -45 568 123 0 57 chr11 97637168 97637274 -53146279 - L1PA8A LINE L1 -1 6130 6031 636 265 17 33 chr11 97637294 97637475 -53146078 - MIR SINE MIR -73 189 12 202 217 22 33 chr11 97637608 97637677 -53145876 + (TA)n Simple_repeat Simple_repeat 2 71 -21 207 0 0 0 chr11 97637677 97637700 -53145853 + (CA)n Simple_repeat Simple_repeat 2 24 0 202 217 22 33 chr11 97637700 97637722 -53145831 + (TA)n Simple_repeat Simple_repeat 71 92 0 252 311 122 0 chr11 97637902 97637992 -53145561 + MIR SINE MIR 160 260 -2 267 133 145 36 chr11 97641625 97641708 -53141845 + L1PA6 LINE L1 6063 6154 0 210 274 33 20 chr11 97641993 97642090 -53141463 - MIR SINE MIR -27 181 86 225 0 0 0 chr11 97642248 97642273 -53141280 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 342 0 0 0 chr11 97642272 97642310 -53141243 + (TG)n Simple_repeat Simple_repeat 1 38 0 252 0 0 0 chr11 97642309 97642337 -53141216 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 237 33 0 0 chr11 97642672 97642702 -53140851 + (CA)n Simple_repeat Simple_repeat 1 30 0 189 132 0 0 chr11 97642702 97642740 -53140813 + (GA)n Simple_repeat Simple_repeat 1 38 0 799 291 156 3 chr11 97644777 97645097 -53138456 + L2 LINE L2 2423 2791 -523 336 304 52 17 chr11 97645606 97645721 -53137832 - L2 LINE L2 0 3272 3154 299 315 37 56 chr11 97645933 97646095 -53137458 - L2 LINE L2 -248 3024 2866 268 247 124 0 chr11 97647302 97647399 -53136154 + MIR SINE MIR 132 240 -22 392 267 75 48 chr11 97648198 97648344 -53135209 + MIR SINE MIR 95 244 -18 626 264 68 20 chr11 97648345 97648595 -53134958 + MIR SINE MIR 1 262 0 465 226 226 14 chr11 97649218 97649364 -53134189 - MER5B DNA MER1_type 0 178 2 1380 208 17 14 chr11 97649685 97649974 -53133579 - AluJo SINE Alu -22 290 1 219 349 0 0 chr11 97650423 97650486 -53133067 - L2 LINE L2 -9 3263 3201 31 0 0 0 chr11 97651465 97651496 -53132057 + AT_rich Low_complexity Low_complexity 1 31 0 279 173 0 0 chr11 97651640 97651692 -53131861 + GA-rich Low_complexity Low_complexity 1 52 0 200 209 23 0 chr11 97651718 97651761 -53131792 + GA-rich Low_complexity Low_complexity 1 44 0 281 267 33 33 chr11 97652836 97652926 -53130627 + L2 LINE L2 3224 3313 0 4352 72 7 9 chr11 97653035 97654085 -53129468 - L1P LINE L1 -3799 2347 1139 6819 58 23 2 chr11 97654085 97655033 -53128520 + L1PA5 LINE L1 5189 6154 0 217 155 35 0 chr11 97655068 97655126 -53128427 + (TA)n Simple_repeat Simple_repeat 1 60 0 398 154 46 131 chr11 97655276 97655451 -53128102 - MER53 DNA DNA 0 189 30 844 227 24 63 chr11 97655649 97655980 -53127573 - L1M4 LINE L1 -2105 4041 3724 245 364 38 15 chr11 97656181 97656313 -53127240 - MIR SINE MIR -56 206 72 253 171 0 182 chr11 97656636 97656724 -53126829 - HsTC2 DNA Tc2 -3 1895 1824 279 253 33 11 chr11 97656806 97656897 -53126656 - MLT1H1 LTR MaLR 0 555 463 232 349 31 8 chr11 97657005 97657134 -53126419 - MLT1H1 LTR MaLR -242 288 157 314 274 78 59 chr11 97657137 97657290 -53126263 - MLT1H LTR MaLR -311 238 83 312 140 0 0 chr11 97659097 97659151 -53124402 - MLT2D LTR ERVL 0 520 400 339 192 0 0 chr11 97659169 97659242 -53124311 + (TG)n Simple_repeat Simple_repeat 2 74 0 1433 209 46 52 chr11 97659256 97659624 -53123929 - MLT2D LTR ERVL -48 366 1 21 82 0 0 chr11 97660210 97660259 -53123294 + AT_rich Low_complexity Low_complexity 1 49 0 219 69 0 0 chr11 97660866 97660895 -53122658 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 365 229 114 60 chr11 97660956 97661122 -53122431 + MER5B DNA MER1_type 1 175 -3 4792 184 51 12 chr11 97661331 97662763 -53120790 - L1MA9 LINE L1 -3 6309 4821 238 351 45 32 chr11 97662902 97663056 -53120497 - MER20B DNA MER1_type -626 157 2 279 304 7 30 chr11 97664257 97664392 -53119161 + CT-rich Low_complexity Low_complexity 1 132 0 646 170 7 43 chr11 97665465 97665606 -53117947 - FLAM_C SINE Alu -7 136 1 21 0 0 0 chr11 97665696 97665717 -53117836 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr11 97665892 97665922 -53117631 + (CA)n Simple_repeat Simple_repeat 2 31 0 521 340 128 15 chr11 97666689 97667018 -53116535 + L2 LINE L2 2942 3307 -6 197 340 0 0 chr11 97667263 97667316 -53116237 - L2 LINE L2 -81 3232 3180 30 0 0 0 chr11 97669270 97669300 -53114253 + AT_rich Low_complexity Low_complexity 1 30 0 243 170 0 0 chr11 97669442 97669489 -53114064 + (TA)n Simple_repeat Simple_repeat 1 47 0 279 0 0 0 chr11 97669498 97669529 -53114024 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 133 0 0 chr11 97670875 97670905 -53112648 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 4896 189 39 1 chr11 97670915 97672163 -53111390 - L1MA7 LINE L1 -1 6290 5000 3386 118 10 0 chr11 97672916 97673423 -53110130 - L1PB1 LINE L1 -43 6108 5597 2146 186 6 42 chr11 97673408 97673880 -53109673 - L1MA7 LINE L1 -1145 5001 4547 * 2308 159 54 0 chr11 97673881 97674347 -53109206 + L1 LINE L1 4095 4585 -1561 409 270 54 0 chr11 97674784 97674895 -53108658 - MLT1J LTR MaLR -394 117 1 257 261 0 15 chr11 97674898 97674963 -53108590 + MIR SINE MIR 196 259 -3 22 0 0 0 chr11 97675765 97675787 -53107766 + AT_rich Low_complexity Low_complexity 1 22 0 41 58 0 0 chr11 97676112 97676181 -53107372 + AT_rich Low_complexity Low_complexity 1 69 0 1394 209 35 81 chr11 97676565 97676971 -53106582 - MLT1B LTR MaLR -3 387 1 955 204 42 8 chr11 97678013 97678273 -53105280 - LTR37B LTR ERV1 -2 466 198 300 280 54 0 chr11 97678515 97678608 -53104945 - LTR37B LTR ERV1 -369 99 2 23 54 0 0 chr11 97678658 97678695 -53104858 + AT_rich Low_complexity Low_complexity 1 37 0 1051 328 13 33 chr11 97678832 97679283 -53104270 + L1M3a LINE L1 1541 1982 -5504 448 247 77 5 chr11 97680557 97680751 -53102802 + L1M3a LINE L1 2221 2428 -4137 969 220 52 43 chr11 97680751 97681056 -53102497 + L1M3a LINE L1 2682 2989 -4576 271 364 50 0 chr11 97681625 97681724 -53101829 + L2 LINE L2 3169 3272 0 222 37 0 0 chr11 97682307 97682334 -53101219 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 360 306 244 21 chr11 97682895 97683231 -53100322 - L1MC4a LINE L1 -1865 5943 5533 326 357 36 0 chr11 97683310 97683478 -53100075 - L1MC4a LINE L1 -2290 5518 5345 449 284 109 51 chr11 97683488 97683918 -53099635 - L1MC4a LINE L1 -815 5331 4877 798 241 48 5 chr11 97683973 97684160 -53099393 + MER20 DNA MER1_type 1 195 -24 2905 92 15 0 chr11 97684274 97684667 -53098886 + MLT2A1 LTR ERVL 1 399 -45 231 105 53 0 chr11 97684752 97684809 -53098744 + (TA)n Simple_repeat Simple_repeat 1 60 0 354 75 19 0 chr11 97684812 97684865 -53098688 + MLT2A1 LTR ERVL 391 444 0 25 0 0 0 chr11 97684901 97684926 -53098627 + AT_rich Low_complexity Low_complexity 1 25 0 320 281 84 43 chr11 97685330 97685549 -53098004 - L1M4 LINE L1 -1907 4239 4009 439 141 54 11 chr11 97685821 97685913 -53097640 - L1MB3 LINE L1 -2 6181 6086 299 315 45 11 chr11 97686726 97686815 -53096738 + L2 LINE L2 2986 3077 -195 513 275 0 0 chr11 97687548 97687726 -53095827 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 325 222 49 83 chr11 97687731 97687875 -53095678 + MER74B LTR ERVL 461 599 -23 448 349 41 0 chr11 97688858 97689053 -53094500 + MIR SINE MIR 44 246 -16 195 42 0 0 chr11 97689407 97689431 -53094122 + (TTCC)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr11 97691747 97691768 -53091785 + AT_rich Low_complexity Low_complexity 1 21 0 2196 100 0 0 chr11 97691789 97692078 -53091475 - AluSc SINE Alu 0 309 21 3472 244 36 12 chr11 97692158 97693134 -53090419 + L1M2c LINE L1 2047 3045 -4521 776 153 47 0 chr11 97693134 97693284 -53090269 - L1MA5 LINE L1 -361 5939 5783 228 35 0 0 chr11 97693316 97693345 -53090208 + (TG)n Simple_repeat Simple_repeat 2 30 0 469 183 0 0 chr11 97693385 97693478 -53090075 - L1MA5 LINE L1 -507 5793 5701 1758 188 6 14 chr11 97693479 97693841 -53089712 + L1MA5 LINE L1 5940 6298 -2 1732 273 50 11 chr11 97693849 97694908 -53088645 + L1MB2 LINE L1 2714 3805 -3760 5516 213 53 17 chr11 97694912 97697118 -53086435 + L1MB2 LINE L1 5292 7587 -3 1475 239 124 24 chr11 97697192 97698030 -53085523 - L1M4 LINE L1 -2845 3301 2380 893 275 72 48 chr11 97698085 97698667 -53084886 + L1M2c LINE L1 5171 5766 -1799 254 318 0 0 chr11 97698673 97698739 -53084814 - MER96 DNA MER1_type? -10 165 100 25 0 0 0 chr11 97698755 97698780 -53084773 + AT_rich Low_complexity Low_complexity 1 25 0 311 314 25 0 chr11 97698929 97699047 -53084506 + L1ME1 LINE L1 6041 6161 -5 238 301 103 27 chr11 97699324 97699470 -53084083 + MIR SINE MIR 19 175 -87 219 191 16 63 chr11 97699500 97699563 -53083990 + MIR SINE MIR 114 173 -89 407 324 8 16 chr11 97699932 97700075 -53083478 + MER5A DNA MER1_type 32 184 -5 527 292 90 41 chr11 97700279 97700546 -53083007 - L2 LINE L2 -5 3308 3029 291 300 12 0 chr11 97701433 97701513 -53082040 + L2 LINE L2 3233 3313 0 554 329 59 4 chr11 97703140 97703377 -53080176 - MIR SINE MIR -5 257 8 754 182 8 0 chr11 97703840 97703972 -53079581 + FLAM_C SINE Alu 3 135 -8 363 315 47 0 chr11 97704182 97704309 -53079244 - MIR SINE MIR -7 255 123 294 228 59 59 chr11 97704532 97704668 -53078885 - MLT1L LTR MaLR 0 615 480 573 329 43 20 chr11 97704831 97705086 -53078467 - MIR SINE MIR 0 262 2 180 324 44 0 chr11 97705950 97706018 -53077535 - L2 LINE L2 -1 3312 3242 252 0 0 0 chr11 97706444 97706472 -53077081 + (T)n Simple_repeat Simple_repeat 1 28 0 2047 116 30 3 chr11 97706604 97706907 -53076646 - AluSx SINE Alu -1 311 1 755 237 27 23 chr11 97706994 97707213 -53076340 - MLT1F1 LTR MaLR 0 567 348 324 0 0 0 chr11 97707237 97707273 -53076280 + (GA)n Simple_repeat Simple_repeat 1 36 0 642 246 6 24 chr11 97707278 97707445 -53076108 - MLT1F1 LTR MaLR -378 164 1 293 358 12 6 chr11 97707781 97707943 -53075610 - MLT1-int LTR MaLR -491 880 718 1287 245 167 11 chr11 97708386 97708852 -53074701 - MLT1F LTR MaLR -1 541 3 279 318 45 28 chr11 97709192 97709368 -53074185 - MIR SINE MIR -6 256 78 411 327 45 51 chr11 97709388 97709721 -53073832 + L1MEc LINE L1 56 386 -6010 4302 205 44 10 chr11 97709727 97710591 -53072962 + MER54A LTR ERVL 9 901 0 1855 264 64 20 chr11 97710609 97711449 -53072104 + L1MEc LINE L1 389 1265 -5131 2197 264 118 25 chr11 97711454 97713299 -53070254 + L1MEc LINE L1 1381 3365 -2850 234 224 155 0 chr11 97713409 97713467 -53070086 + L1MEc LINE L1 3568 3634 -2581 507 257 96 0 chr11 97714036 97714172 -53069381 - L1MC5 LINE L1 -837 7124 6976 293 340 0 0 chr11 97714654 97714748 -53068805 + MIR SINE MIR 159 252 -10 229 383 23 8 chr11 97715012 97715140 -53068413 + L2 LINE L2 2935 3064 -208 25 0 0 0 chr11 97715470 97715495 -53068058 + AT_rich Low_complexity Low_complexity 1 25 0 283 314 201 0 chr11 97715793 97715952 -53067601 - MIR SINE MIR -9 253 63 23 33 0 0 chr11 97716457 97716487 -53067066 + AT_rich Low_complexity Low_complexity 1 30 0 605 208 146 16 chr11 97716814 97717018 -53066535 + MER39 LTR ERV1 6 229 -424 2217 138 72 3 chr11 97717513 97717890 -53065663 + MER57A LTR ERV1 1 403 0 333 318 32 52 chr11 97718178 97718332 -53065221 - L2 LINE L2 -1 3271 3121 709 268 54 38 chr11 97718378 97718855 -53064698 - LTR33 LTR ERVL -1 520 1 580 257 80 37 chr11 97718860 97719047 -53064506 - MIR SINE MIR -43 219 25 278 294 47 12 chr11 97719970 97720055 -53063498 + MIR SINE MIR 104 191 -71 1553 184 71 22 chr11 97720194 97720601 -53062952 - L1 LINE L1 -1514 4632 4206 1247 171 42 0 chr11 97720601 97720864 -53062689 + L1MA4 LINE L1 6015 6288 -12 21 0 0 0 chr11 97721044 97721065 -53062488 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr11 97722010 97722033 -53061520 + AT_rich Low_complexity Low_complexity 1 23 0 26 74 0 0 chr11 97722099 97722153 -53061400 + AT_rich Low_complexity Low_complexity 1 54 0 321 346 98 20 chr11 97722254 97722407 -53061146 + L1MEd LINE L1 243 407 -5712 388 129 32 0 chr11 97722469 97722531 -53061022 + AluSg/x SINE Alu 97 160 -142 189 0 0 0 chr11 97722689 97722710 -53060843 + (A)n Simple_repeat Simple_repeat 1 21 0 9095 204 74 23 chr11 97722717 97724112 -53059441 + L1MA6 LINE L1 2990 4312 -3407 1986 130 64 14 chr11 97724112 97724458 -53059095 + THE1B LTR MaLR 1 363 -1 9095 204 74 23 chr11 97724458 97727482 -53056071 + L1MA6 LINE L1 4312 7718 -1 472 326 46 6 chr11 97728072 97728247 -53055306 + MIR3 SINE MIR 16 197 -11 6329 41 2 0 chr11 97728557 97729644 -53053909 - L1P2 LINE L1 -454 5701 4613 953 52 0 0 chr11 97729639 97729755 -53053798 + L1P2 LINE L1 4505 4620 -1526 * 12741 150 63 22 chr11 97730781 97733104 -53050449 - Tigger1 DNA MER2_type 0 2418 1 225 207 0 0 chr11 97734299 97734357 -53049196 + L1MC4 LINE L1 6646 6703 -1339 299 191 15 0 chr11 97734357 97734425 -53049128 + (TA)n Simple_repeat Simple_repeat 2 70 0 308 176 15 0 chr11 97734534 97734602 -53048951 + (TA)n Simple_repeat Simple_repeat 1 69 0 267 247 47 0 chr11 97734608 97734693 -53048860 + L1MC4 LINE L1 6615 6703 -1339 236 137 0 20 chr11 97734699 97734750 -53048803 - LTR66 LTR ERVL -171 439 390 316 241 46 11 chr11 97734771 97734858 -53048695 - L1MC4 LINE L1 -1339 6703 6614 3202 137 51 11 chr11 97734863 97735396 -53048157 - L1PA16 LINE L1 -37 6129 5576 278 331 81 33 chr11 97735814 97736086 -53047467 - L1MC4 LINE L1 -1894 5914 5630 26 82 0 0 chr11 97736335 97736396 -53047157 + AT_rich Low_complexity Low_complexity 1 61 0 22 56 0 0 chr11 97736536 97736572 -53046981 + AT_rich Low_complexity Low_complexity 1 36 0 331 126 6 115 chr11 97736671 97736845 -53046708 + (CAAAAA)n Simple_repeat Simple_repeat 5 159 0 29 78 0 0 chr11 97737093 97737157 -53046396 + AT_rich Low_complexity Low_complexity 1 64 0 364 179 13 0 chr11 97737164 97737242 -53046311 - L1PA12 LINE L1 -7502 79 1 339 258 54 49 chr11 97737253 97737451 -53046102 + HAL1b LINE L1 343 503 -845 1000 333 81 35 chr11 97737504 97737763 -53045790 - HAL1 LINE L1 -1616 891 645 342 0 0 0 chr11 97737763 97737801 -53045752 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1000 333 81 35 chr11 97737801 97738361 -53045192 - HAL1 LINE L1 -1862 645 35 480 291 84 29 chr11 97738421 97738899 -53044654 - L1M4 LINE L1 -2337 3809 3306 29 104 0 0 chr11 97738997 97739103 -53044450 + AT_rich Low_complexity Low_complexity 1 106 0 2584 50 3 3 chr11 97739225 97739548 -53044005 - L1PA5 LINE L1 -107 6047 5725 451 87 0 0 chr11 97739548 97739616 -53043937 + L1PA5 LINE L1 6085 6153 -1 21 0 0 0 chr11 97739699 97739720 -53043833 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 97740004 97740034 -53043519 + AT_rich Low_complexity Low_complexity 1 30 0 356 302 57 13 chr11 97740081 97740240 -53043313 - L1M4 LINE L1 -3733 2413 2248 24 53 0 0 chr11 97740481 97740519 -53043034 + AT_rich Low_complexity Low_complexity 1 38 0 1183 178 12 86 chr11 97740705 97741031 -53042522 - L1MA10 LINE L1 -2 6332 6031 2215 193 18 32 chr11 97741033 97741526 -53042027 + L1MB1 LINE L1 5542 6027 -162 1948 97 0 0 chr11 97741944 97742230 -53041323 - AluSp SINE Alu 0 324 39 391 289 116 64 chr11 97742240 97742695 -53040858 + L1MC4a LINE L1 3836 4319 -1827 838 173 146 16 chr11 97742703 97742888 -53040665 - MLT1A1 LTR MaLR 0 365 157 25 0 0 0 chr11 97742898 97742923 -53040630 + AT_rich Low_complexity Low_complexity 1 25 0 1004 82 0 0 chr11 97742926 97743060 -53040493 + AluY SINE Alu 171 304 -7 725 197 7 7 chr11 97743060 97743202 -53040351 - MLT1A1 LTR MaLR -221 144 3 943 311 81 31 chr11 97743257 97744347 -53039206 + L1MC4a LINE L1 4429 5557 -605 * 1954 46 0 0 chr11 97744343 97744584 -53038969 - L1PA4 LINE L1 -1079 5067 4827 * 5448 46 12 1 chr11 97744570 97745459 -53038094 + L1PA4 LINE L1 5051 5946 -209 609 171 0 49 chr11 97745567 97745690 -53037863 + Tigger2a DNA MER2_type 1 117 -317 278 296 35 0 chr11 97745696 97745811 -53037742 + L1MC4a LINE L1 5910 6028 -1780 * 1196 266 84 20 chr11 97745790 97746635 -53036918 - L1ME LINE L1 -420 5746 4845 * 2094 199 2 0 chr11 97746631 97747039 -53036514 + L1P LINE L1 1951 2359 -3787 606 112 22 0 chr11 97747043 97747132 -53036421 + HSMAR1 DNA Mariner 1097 1187 -100 2773 19 0 0 chr11 97747132 97747442 -53036111 + AluYb8 SINE Alu 1 310 -8 2809 3 0 0 chr11 97747581 97747887 -53035666 - AluYa5 SINE Alu -5 306 1 339 220 155 83 chr11 97747900 97748177 -53035376 + L1MC5 LINE L1 7489 7785 -176 521 323 150 28 chr11 97748543 97749191 -53034362 + L2 LINE L2 2317 3059 -213 24 67 0 0 chr11 97749311 97749356 -53034197 + AT_rich Low_complexity Low_complexity 1 45 0 280 62 78 0 chr11 97751079 97751143 -53032410 + GA-rich Low_complexity Low_complexity 1 69 0 1011 70 35 0 chr11 97751143 97751314 -53032239 + (GA)n Simple_repeat Simple_repeat 1 177 0 184 259 214 30 chr11 97752995 97753126 -53030427 + L2 LINE L2 3115 3269 -44 183 80 0 0 chr11 97753163 97753188 -53030365 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 280 230 70 50 chr11 97753277 97753377 -53030176 + MER5B DNA MER1_type 48 149 -29 321 344 229 0 chr11 97753471 97753628 -53029925 - MIR SINE MIR -4 258 66 1595 145 0 4 chr11 97755140 97755388 -53028165 - AluSq SINE Alu -66 247 1 244 318 0 0 chr11 97755390 97755456 -53028097 + MER5B DNA MER1_type 113 178 0 257 271 173 45 chr11 97755745 97755878 -53027675 - MIR3 SINE MIR -21 187 38 261 353 55 0 chr11 97757378 97757489 -53026064 + MIR SINE MIR 16 131 -77 301 322 107 23 chr11 97757571 97757748 -53025805 + MIR SINE MIR 1 192 -70 629 257 145 19 chr11 97757941 97758155 -53025398 - MIR SINE MIR -15 247 7 222 348 11 33 chr11 97758571 97758663 -53024890 + MIR SINE MIR 37 126 -82 253 235 81 73 chr11 97759247 97759383 -53024170 + MIR SINE MIR 116 252 -10 304 352 21 35 chr11 97759505 97759647 -53023906 - L2 LINE L2 -1 3312 3173 709 235 15 10 chr11 97759826 97760089 -53023464 - HsTC2 DNA Tc2 -3 1895 1582 795 337 69 71 chr11 97760314 97760779 -53022774 + MER45C DNA AcHobo 27 492 -461 1343 185 103 49 chr11 97760779 97761146 -53022407 + MLT1B LTR MaLR 1 387 -3 795 337 69 71 chr11 97761146 97761288 -53022265 + MER45C DNA AcHobo 492 633 -320 517 341 64 22 chr11 97761330 97761644 -53021909 - L2 LINE L2 -1181 2133 1807 264 394 15 15 chr11 97761690 97761822 -53021731 + MIR SINE MIR 46 177 -85 30 77 0 0 chr11 97762106 97762171 -53021382 + AT_rich Low_complexity Low_complexity 1 65 0 319 396 11 0 chr11 97762326 97762417 -53021136 + L2 LINE L2 3146 3237 -35 313 329 182 21 chr11 97762482 97762531 -53021022 - L2 LINE L2 -154 3159 3119 401 286 33 56 chr11 97762531 97762744 -53020809 + MER63A DNA MER1_type 2 209 -1 313 329 182 21 chr11 97762744 97762974 -53020579 - L2 LINE L2 -194 3119 2835 358 271 165 8 chr11 97762975 97763108 -53020445 - LTR33 LTR ERVL 0 521 368 400 339 0 0 chr11 97763217 97763326 -53020227 + MIR SINE MIR 36 144 -64 300 329 0 0 chr11 97763696 97763772 -53019781 + L2 LINE L2 3223 3298 -15 219 260 178 0 chr11 97763780 97763853 -53019700 - MIR SINE MIR -87 175 90 6403 142 40 32 chr11 97763937 97765158 -53018395 + Tigger3b DNA MER2_type 1 1231 0 300 324 69 0 chr11 97765531 97765676 -53017877 - MER46C DNA MER2_type 0 338 184 834 187 0 7 chr11 97765684 97765823 -53017730 + FRAM SINE Alu 1 137 -39 204 111 0 0 chr11 97765838 97765874 -53017679 + (CAG)n Simple_repeat Simple_repeat 2 37 0 271 288 131 20 chr11 97765877 97766030 -53017523 - MER46C DNA MER2_type -165 173 4 194 104 0 42 chr11 97766348 97766396 -53017157 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 332 346 15 15 chr11 97766793 97766929 -53016624 - MIR SINE MIR -4 258 123 180 225 75 0 chr11 97767613 97767653 -53015900 + L2 LINE L2 3216 3258 -14 2039 278 121 42 chr11 97767835 97768723 -53014830 - L1MC4 LINE L1 0 8042 7035 356 0 23 0 chr11 97768723 97768767 -53014786 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 2039 278 121 42 chr11 97768767 97769070 -53014483 - L1MC4 LINE L1 -1007 7035 6757 1982 110 0 0 chr11 97769469 97769732 -53013821 + AluSx SINE Alu 1 263 -49 225 0 0 0 chr11 97769742 97769767 -53013786 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 572 241 152 0 chr11 97770041 97770199 -53013354 + MIR SINE MIR 37 218 -44 261 295 13 0 chr11 97770529 97770607 -53012946 + L2 LINE L2 3233 3311 -2 412 377 108 34 chr11 97770939 97771318 -53012235 - L2 LINE L2 -27 3245 2839 258 224 90 0 chr11 97772632 97772699 -53010854 - MIR SINE MIR -26 236 164 4542 43 7 4 chr11 97772840 97773399 -53010154 - L1PA5 LINE L1 -9 6145 5585 1720 162 4 7 chr11 97774171 97774449 -53009104 - AluSx SINE Alu -35 277 1 4788 224 80 18 chr11 97774536 97775882 -53007671 - Charlie1a DNA MER1_type -16 1439 11 240 270 0 32 chr11 97776045 97776108 -53007445 - MER5A DNA MER1_type -47 142 82 211 242 0 16 chr11 97776161 97776223 -53007330 + (TA)n Simple_repeat Simple_repeat 2 62 0 252 0 0 0 chr11 97776695 97776723 -53006830 + (CA)n Simple_repeat Simple_repeat 2 29 0 7160 239 102 27 chr11 97777571 97778470 -53005083 + L1MDa LINE L1 17 847 -5693 1706 161 10 23 chr11 97778470 97778769 -53004784 - AluSq SINE Alu -18 295 1 7160 239 102 27 chr11 97778769 97778963 -53004590 + L1MDa LINE L1 847 1025 -5515 468 152 0 0 chr11 97778963 97779042 -53004511 - MADE1 DNA Mariner -1 79 1 7160 239 102 27 chr11 97779042 97781870 -53001683 + L1MDa LINE L1 1025 4227 -2313 847 164 11 55 chr11 97781871 97782054 -53001499 + L1MD1 LINE L1 6058 6232 -10 2245 87 0 7 chr11 97782058 97782356 -53001197 + AluY SINE Alu 1 296 -15 27864 119 21 18 chr11 97783033 97787483 -52996070 + L1P LINE L1 1 4466 -1680 278 355 100 25 chr11 97788336 97788536 -52995017 - MIR SINE MIR 0 262 48 851 283 57 22 chr11 97788566 97788880 -52994673 + Charlie2 DNA MER1_type 1 325 -2537 434 233 73 100 chr11 97788891 97789192 -52994361 + Charlie2 DNA MER1_type 1865 2157 -705 253 161 0 32 chr11 97789227 97789242 -52994311 - L1MA8 LINE L1 -235 6056 6042 1642 132 17 17 chr11 97789242 97789537 -52994016 - L1MA8 LINE L1 -3 6288 5994 253 161 0 32 chr11 97789537 97789583 -52993970 - L1MA8 LINE L1 -249 6042 5997 527 258 91 8 chr11 97789601 97789865 -52993688 + Charlie2 DNA MER1_type 2483 2768 -94 1245 135 0 35 chr11 97789868 97790098 -52993455 + L1MA4 LINE L1 6074 6295 -5 22 56 0 0 chr11 97790098 97790134 -52993419 + AT_rich Low_complexity Low_complexity 1 36 0 193 386 91 14 chr11 97790294 97790514 -52993039 + MIR SINE MIR 3 239 -23 325 317 152 7 chr11 97791094 97791239 -52992314 + MIR SINE MIR 19 184 -78 360 361 68 30 chr11 97792187 97792483 -52991070 - LTR16A1 LTR ERVL -4 453 147 5814 193 24 15 chr11 97793589 97795016 -52988537 + L1M2 LINE L1 4479 5918 -743 1622 144 4 0 chr11 97795023 97795266 -52988287 + AluSg SINE Alu 36 279 -31 9578 84 36 4 chr11 97795368 97797210 -52986343 + L1PA6 LINE L1 3926 5830 -324 502 303 19 12 chr11 97797307 97797469 -52986084 + MIR SINE MIR 2 164 -98 195 312 79 37 chr11 97797540 97797729 -52985824 - L2 LINE L2 -79 3234 3038 1998 95 39 0 chr11 97797729 97798012 -52985541 + L1PA6 LINE L1 5850 6143 -11 24 0 0 0 chr11 97798015 97798039 -52985514 + AT_rich Low_complexity Low_complexity 1 24 0 515 208 9 0 chr11 97798129 97798235 -52985318 - L1PB4 LINE L1 -8 6148 6042 1534 144 27 12 chr11 97798903 97799160 -52984393 + AluSx SINE Alu 44 304 -8 30 45 0 0 chr11 97799313 97799357 -52984196 + GC_rich Low_complexity Low_complexity 1 44 0 189 0 0 0 chr11 97799370 97799391 -52984162 + (A)n Simple_repeat Simple_repeat 1 21 0 288 271 113 23 chr11 97799633 97799766 -52983787 - MLT1J LTR MaLR -366 145 1 542 277 128 21 chr11 97799980 97800344 -52983209 - MLT1J2 LTR MaLR -11 435 20 345 314 38 13 chr11 97801390 97801549 -52982004 - MIR SINE MIR -42 220 58 704 303 29 2 chr11 97801607 97801806 -52981747 + MIR SINE MIR 17 217 -45 2003 130 27 0 chr11 97802018 97802310 -52981243 - AluSx SINE Alu -12 300 1 407 337 27 43 chr11 97802734 97802815 -52980738 + MIR SINE MIR 3 84 -178 2327 155 41 5 chr11 97802815 97803228 -52980325 - MSTA LTR MaLR 0 428 1 407 337 27 43 chr11 97803228 97803330 -52980223 + MIR SINE MIR 84 183 -79 1131 66 20 13 chr11 97803330 97803517 -52980036 + AluSq SINE Alu 135 322 0 545 246 80 11 chr11 97803802 97803977 -52979576 - MER5A DNA MER1_type 0 189 3 220 195 24 0 chr11 97804707 97804748 -52978805 + L2 LINE L2 3249 3290 -23 475 319 0 0 chr11 97804974 97805090 -52978463 + MER5B DNA MER1_type 11 126 -52 2092 126 0 0 chr11 97805179 97805472 -52978081 + AluSx SINE Alu 2 294 -18 330 348 87 14 chr11 97805810 97806017 -52977536 + MIR SINE MIR 20 241 -21 258 224 90 0 chr11 97806720 97806787 -52976766 + MIR SINE MIR 164 236 -26 3267 177 45 19 chr11 97807124 97807640 -52975913 + L1MA8 LINE L1 5514 6054 -237 1832 173 0 3 chr11 97807640 97807940 -52975613 + AluSx SINE Alu 1 299 -13 3267 177 45 19 chr11 97807940 97808119 -52975434 + L1MA8 LINE L1 6054 6227 -64 13866 148 20 26 chr11 97808119 97808230 -52975323 - Tigger1 DNA MER2_type 0 2418 2308 2401 151 25 16 chr11 97808230 97808661 -52974892 + L1PA16 LINE L1 5730 6164 -2 13866 148 20 26 chr11 97808661 97810971 -52972582 - Tigger1 DNA MER2_type -110 2308 11 4487 183 26 23 chr11 97810989 97811916 -52971637 + L1MA7 LINE L1 5362 6291 0 962 204 6 0 chr11 97811956 97812137 -52971416 + MER58A DNA MER1_type 43 224 0 312 70 0 0 chr11 97812153 97812196 -52971357 + (CA)n Simple_repeat Simple_repeat 1 43 0 822 205 35 6 chr11 97812850 97813021 -52970532 - MER63A DNA MER1_type -34 176 1 9801 194 41 48 chr11 97813093 97813767 -52969786 - L1 LINE L1 -941 5205 4528 1943 138 3 0 chr11 97813767 97814073 -52969480 - AluSx SINE Alu 0 307 1 9801 194 41 48 chr11 97814073 97816028 -52967525 - L1 LINE L1 -1618 4528 2591 1121 103 6 6 chr11 97816031 97816205 -52967348 + L1PA11 LINE L1 6001 6174 0 358 297 98 16 chr11 97816328 97816574 -52966979 - L1M4 LINE L1 -783 5363 5098 186 390 0 13 chr11 97817343 97817420 -52966133 + L2 LINE L2 3223 3298 -15 285 206 164 0 chr11 97817485 97817558 -52965995 - L2 LINE L2 0 3313 3229 335 197 16 31 chr11 97817667 97817794 -52965759 + (TATAA)n Simple_repeat Simple_repeat 3 127 0 196 351 43 21 chr11 97817833 97817927 -52965626 - MIR SINE MIR -119 143 48 1962 130 7 13 chr11 97818141 97818448 -52965105 - AluSx SINE Alu -7 305 1 241 360 45 50 chr11 97818593 97818793 -52964760 + MIR SINE MIR 13 211 -51 195 217 65 0 chr11 97819201 97819247 -52964306 - L2 LINE L2 -3 3310 3262 32 0 0 0 chr11 97819786 97819818 -52963735 + AT_rich Low_complexity Low_complexity 1 32 0 231 343 55 0 chr11 97820704 97820777 -52962776 - L2 LINE L2 0 3272 3196 185 313 62 0 chr11 97820944 97821008 -52962545 + L2 LINE L2 3234 3301 -12 309 227 45 4 chr11 97821199 97821314 -52962239 - MIR SINE MIR -6 256 99 2395 84 3 0 chr11 97821579 97821888 -52961665 + AluY SINE Alu 1 310 -1 414 325 25 13 chr11 97822149 97822306 -52961247 + MIR SINE MIR 12 170 -92 322 351 81 20 chr11 97823110 97823258 -52960295 + L2 LINE L2 3104 3260 -12 365 286 61 0 chr11 97823559 97823657 -52959896 - MIR3 SINE MIR -23 185 82 506 316 18 16 chr11 97823914 97824113 -52959440 + MIR SINE MIR 2 205 -3 1228 331 89 73 chr11 97824148 97825978 -52957575 - L2 LINE L2 -79 3234 1376 326 359 73 24 chr11 97826158 97826364 -52957189 - MIR SINE MIR -26 236 21 2268 151 51 0 chr11 97826430 97826801 -52956752 - MLT1B LTR MaLR 0 390 1 188 286 29 14 chr11 97827959 97828029 -52955524 + MIR3 SINE MIR 127 197 -11 484 334 90 33 chr11 97828091 97828570 -52954983 + L1MEd LINE L1 256 761 -5611 259 357 135 16 chr11 97828596 97828781 -52954772 - L2 LINE L2 -361 2953 2747 8513 217 14 8 chr11 97829353 97831337 -52952216 - L1 LINE L1 -1587 4559 2564 190 56 56 0 chr11 97831338 97831374 -52952179 + A-rich Low_complexity Low_complexity 2 39 0 1086 306 10 6 chr11 97831374 97831868 -52951685 - L1M4 LINE L1 -2525 3621 3126 287 225 0 14 chr11 97832048 97832119 -52951434 + Charlie5 DNA MER1_type 30 99 -2513 444 229 0 0 chr11 97832135 97832240 -52951313 + Charlie5 DNA MER1_type 2248 2352 -260 306 148 0 0 chr11 97832383 97832437 -52951116 + (TG)n Simple_repeat Simple_repeat 2 55 0 853 296 117 62 chr11 97832447 97833199 -52950354 - LTR50 LTR ERVL -2 793 1 470 361 32 12 chr11 97833649 97833898 -52949655 - ERVL LTR ERVL -440 5324 5071 348 270 27 68 chr11 97834677 97834825 -52948728 + HERVL LTR ERVL 4152 4293 -1361 318 302 78 0 chr11 97834926 97835042 -52948511 - MER5B DNA MER1_type -1 177 53 289 282 11 105 chr11 97835843 97835967 -52947586 + MIR SINE MIR 7 131 -77 389 254 0 56 chr11 97836154 97836296 -52947257 + L1MEd LINE L1 1160 1293 -4987 * 981 265 54 32 chr11 97836292 97836729 -52946824 + L1MEd LINE L1 1532 2110 -4453 1152 157 23 1 chr11 97836751 97837050 -52946503 + MER1B DNA MER1_type 1 338 -1 4007 238 44 16 chr11 97837065 97837998 -52945555 + L1MEd LINE L1 2272 3256 -3126 2262 110 0 0 chr11 97837998 97838297 -52945256 - AluSq SINE Alu -14 299 1 4007 238 44 16 chr11 97838297 97838770 -52944783 + L1MEd LINE L1 3256 3715 -2667 216 0 0 0 chr11 97838786 97838810 -52944743 + (A)n Simple_repeat Simple_repeat 1 24 0 201 108 0 0 chr11 97839288 97839325 -52944228 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 3050 250 58 34 chr11 97839325 97840393 -52943160 + L1MEd LINE L1 3744 4837 -1545 990 224 44 35 chr11 97840395 97840623 -52942930 - L1M4b LINE L1 -6623 236 7 549 72 60 0 chr11 97840814 97840897 -52942656 - L1PA13 LINE L1 -1 6162 6075 2330 84 0 39 chr11 97840897 97841229 -52942324 + L1PA12 LINE L1 5535 5853 -315 21 0 0 0 chr11 97842186 97842207 -52941346 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 97842959 97842980 -52940573 + (CAA)n Simple_repeat Simple_repeat 1 21 0 225 301 68 0 chr11 97844057 97844130 -52939423 - L2 LINE L2 -6 3307 3230 186 43 0 0 chr11 97844246 97844269 -52939284 + (TG)n Simple_repeat Simple_repeat 1 23 0 794 249 42 32 chr11 97844454 97844671 -52938882 + MIR SINE MIR 16 234 -28 23 0 0 0 chr11 97845044 97845067 -52938486 + AT_rich Low_complexity Low_complexity 1 23 0 194 301 89 49 chr11 97845615 97845738 -52937815 - MIR SINE MIR -96 166 39 190 244 0 22 chr11 97846940 97846985 -52936568 - MIR SINE MIR -8 254 211 * 202 286 0 0 chr11 97846954 97846996 -52936557 - L2 LINE L2 -27 3286 3245 35 54 0 0 chr11 97847098 97847154 -52936399 + AT_rich Low_complexity Low_complexity 1 56 0 189 331 75 15 chr11 97847291 97847424 -52936129 - L2 LINE L2 -40 3273 3133 356 259 56 9 chr11 97847575 97847683 -52935870 - MIR SINE MIR 0 262 150 2064 203 5 8 chr11 97847685 97847717 -52935836 - MLT1B LTR MaLR -2 388 357 12700 150 30 39 chr11 97847717 97850158 -52933395 - Tigger1 DNA MER2_type 0 2418 1 2064 203 5 8 chr11 97850158 97850514 -52933039 - MLT1B LTR MaLR -33 357 1 326 308 158 0 chr11 97850514 97850634 -52932919 - MIR SINE MIR -108 154 16 23 33 0 0 chr11 97850653 97850683 -52932870 + AT_rich Low_complexity Low_complexity 1 30 0 318 160 0 0 chr11 97850788 97850838 -52932715 + 5S rRNA rRNA 43 92 -29 329 263 136 8 chr11 97850947 97851065 -52932488 - MIR SINE MIR -25 237 105 212 273 18 18 chr11 97851799 97851854 -52931699 + MIR SINE MIR 20 74 -134 315 274 32 31 chr11 97851876 97851988 -52931565 + MIR SINE MIR 41 152 -65 2353 165 8 0 chr11 97852005 97852405 -52931148 - MER57A LTR ERV1 0 403 1 182 333 0 0 chr11 97852870 97852921 -52930632 + MIR SINE MIR 37 87 -121 227 298 221 0 chr11 97853292 97853396 -52930157 + MIR3 SINE MIR 28 154 -54 219 308 64 0 chr11 97853501 97853579 -52929974 - MIR SINE MIR -74 188 106 28 29 0 0 chr11 97853671 97853706 -52929847 + AT_rich Low_complexity Low_complexity 1 35 0 430 352 138 32 chr11 97853893 97854904 -52928649 + L2 LINE L2 2185 3313 0 2381 167 42 6 chr11 97855028 97855500 -52928053 - L1MC3 LINE L1 0 7785 7297 2979 170 54 12 chr11 97855505 97856134 -52927419 + MER39 LTR ERV1 5 696 -11 2275 196 70 26 chr11 97856144 97856685 -52926868 - L1MC3 LINE L1 -483 7302 6738 1706 225 53 86 chr11 97856682 97857566 -52925987 - L1MCb LINE L1 -4851 1194 551 * 1738 269 44 20 chr11 97857650 97858193 -52925360 - L1MCb LINE L1 -5488 557 2 280 159 125 34 chr11 97858955 97859043 -52924510 + L1ME4a LINE L1 6025 6120 -1 206 283 0 0 chr11 97859541 97859587 -52923966 + L2 LINE L2 3267 3312 -1 262 316 63 51 chr11 97859980 97860138 -52923415 - MIR SINE MIR -98 164 5 823 301 125 48 chr11 97860267 97860682 -52922871 - LTR67 LTR ERVL -5 552 106 299 298 152 18 chr11 97861660 97861831 -52921722 + MIR SINE MIR 50 243 -19 390 255 134 22 chr11 97862096 97862265 -52921288 - MIR SINE MIR -55 207 25 200 119 0 24 chr11 97862371 97862413 -52921140 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 571 310 10 25 chr11 97862811 97863008 -52920545 - MIR SINE MIR -1 261 68 208 386 50 0 chr11 97863376 97863477 -52920076 + L2 LINE L2 2891 2996 -276 366 354 87 0 chr11 97863848 97863975 -52919578 - L2 LINE L2 -1 3271 3134 674 351 76 27 chr11 97864088 97864643 -52918910 - L2 LINE L2 -518 2796 2215 377 331 50 0 chr11 97864643 97864782 -52918771 - MIR SINE MIR -64 198 53 531 191 9 0 chr11 97865092 97865197 -52918356 + FLAM_A SINE Alu 31 136 -6 22 35 0 0 chr11 97866170 97866199 -52917354 + AT_rich Low_complexity Low_complexity 1 29 0 182 356 59 8 chr11 97866885 97867003 -52916550 - MIR SINE MIR -10 252 129 418 269 140 35 chr11 97867059 97867230 -52916323 - MLT1J LTR MaLR -206 305 117 289 315 94 16 chr11 97867617 97867744 -52915809 - L2 LINE L2 0 3313 3177 529 256 128 18 chr11 97868165 97868493 -52915060 - HAL1 LINE L1 -120 2387 2024 246 322 94 35 chr11 97868684 97868855 -52914698 - L2 LINE L2 0 3313 3133 321 26 0 0 chr11 97869775 97869813 -52913740 + (CA)n Simple_repeat Simple_repeat 1 38 0 25 0 0 0 chr11 97870699 97870724 -52912829 + AT_rich Low_complexity Low_complexity 1 25 0 681 223 91 36 chr11 97871285 97871505 -52912048 - MIR SINE MIR 0 262 31 499 346 25 29 chr11 97872718 97872958 -52910595 + L3 LINE CR1 1320 1558 -19 356 274 69 40 chr11 97875335 97875510 -52908043 - MIR SINE MIR -13 249 70 575 300 83 0 chr11 97876029 97876209 -52907344 + MIR SINE MIR 28 222 -40 276 314 97 32 chr11 97876578 97876702 -52906851 - L2 LINE L2 0 3272 3141 1122 221 9 22 chr11 97876920 97877146 -52906407 + MER58A DNA MER1_type 2 224 0 1963 130 54 23 chr11 97877469 97877822 -52905731 - THE1B LTR MaLR 0 364 1 210 330 115 34 chr11 97877826 97878035 -52905518 + L2 LINE L2 1501 1726 -1588 379 351 163 26 chr11 97878107 97878457 -52905096 + L2 LINE L2 1727 2124 -1190 935 266 8 12 chr11 97878527 97878771 -52904782 + L1PB4 LINE L1 5912 6154 -2 267 157 118 0 chr11 97878871 97878922 -52904631 - LTR16A LTR ERVL -141 309 253 204 250 0 0 chr11 97878925 97878973 -52904580 + (TA)n Simple_repeat Simple_repeat 2 49 0 238 259 0 74 chr11 97878973 97879054 -52904499 - MLT2C1 LTR ERVL -54 343 269 618 332 39 22 chr11 97879294 97879526 -52904027 - HERV16 LTR ERVL -4758 238 3 556 352 41 15 chr11 97879543 97879813 -52903740 - LTR16A LTR ERVL -156 294 18 832 301 98 82 chr11 97879903 97880070 -52903483 + L2 LINE L2 2222 2385 -929 1871 146 28 9 chr11 97880070 97880391 -52903162 + L1PB3 LINE L1 5824 6150 -4 832 301 98 82 chr11 97880391 97880857 -52902696 + L2 LINE L2 2385 2865 -449 442 335 124 5 chr11 97881689 97881898 -52901655 - MIR SINE MIR -27 235 2 312 236 124 43 chr11 97883121 97883282 -52900271 - MIR SINE MIR -32 230 57 270 339 17 26 chr11 97883446 97883561 -52899992 - MIR SINE MIR -115 147 34 2764 189 33 9 chr11 97884559 97885108 -52898445 - MER68 LTR ERV1 0 562 1 735 199 25 6 chr11 97885390 97885551 -52898002 - MER82 DNA MER2_type -2 651 488 243 0 0 0 chr11 97885652 97885679 -52897874 + (TA)n Simple_repeat Simple_repeat 1 27 0 959 205 81 0 chr11 97885702 97885912 -52897641 - MER82 DNA MER2_type -425 228 2 2173 131 3 0 chr11 97887662 97887974 -52895579 - AluSq SINE Alu 0 313 1 45 0 0 0 chr11 97888544 97888589 -52894964 + AT_rich Low_complexity Low_complexity 1 45 0 42202 34 25 1 chr11 97889651 97889664 -52893889 - L1PA2 LINE L1 -3 6152 6141 307 87 0 0 chr11 97889664 97889710 -52893843 + (TTA)n Simple_repeat Simple_repeat 3 180 0 42202 34 25 1 chr11 97889710 97895697 -52887856 - L1PA2 LINE L1 -14 6141 2 1935 132 3 7 chr11 97896288 97896606 -52886947 - AluSq SINE Alu 0 313 1 212 146 0 42 chr11 97897839 97897887 -52885666 + (AATAG)n Simple_repeat Simple_repeat 2 47 0 2059 82 0 27 chr11 97898524 97898877 -52884676 + AluY SINE Alu 1 345 0 318 294 141 0 chr11 97898882 97898967 -52884586 + MIR SINE MIR 49 145 -63 216 88 53 35 chr11 97899499 97899556 -52883997 + (TATG)n Simple_repeat Simple_repeat 1 58 0 25 31 0 0 chr11 97899564 97899596 -52883957 + AT_rich Low_complexity Low_complexity 1 32 0 1871 158 20 3 chr11 97899746 97900049 -52883504 + AluJb SINE Alu 4 311 -1 2217 93 0 32 chr11 97900357 97900670 -52882883 - AluSx SINE Alu -7 305 3 2218 95 3 0 chr11 97901552 97901847 -52881706 - AluSg1 SINE Alu -1 308 13 342 212 141 0 chr11 97902308 97902393 -52881160 + L1MC4 LINE L1 6607 6703 -1339 21 36 0 0 chr11 97902539 97902567 -52880986 + AT_rich Low_complexity Low_complexity 1 28 0 3242 277 70 50 chr11 97904261 97905095 -52878458 + L1MEc LINE L1 35 850 -5546 1896 171 17 52 chr11 97905095 97905499 -52878054 + MLT1B LTR MaLR 1 390 0 3242 277 70 50 chr11 97905499 97906562 -52876991 + L1MEc LINE L1 850 1971 -4425 1126 199 5 9 chr11 97906587 97906798 -52876755 + AluJo SINE Alu 84 293 -19 468 239 29 64 chr11 97906820 97906865 -52876688 + L1MEc LINE L1 2019 2064 -4332 600 266 68 17 chr11 97906865 97907042 -52876511 - MER5A DNA MER1_type 0 189 4 468 239 29 64 chr11 97907042 97907276 -52876277 + L1MEc LINE L1 2064 2288 -4108 * 2164 234 52 12 chr11 97907269 97907923 -52875630 + L1MEc LINE L1 2530 3209 -3006 38 22 0 0 chr11 97908160 97908205 -52875348 + AT_rich Low_complexity Low_complexity 1 45 0 224 292 83 49 chr11 97908847 97908991 -52874562 + L3b LINE CR1 1304 1452 -131 352 343 99 29 chr11 97909155 97909327 -52874226 + MIR3 SINE MIR 23 206 -2 346 316 74 0 chr11 97909443 97909633 -52873920 + L1ME LINE L1 5603 5806 -315 259 303 0 0 chr11 97909815 97909891 -52873662 + (CA)n Simple_repeat Simple_repeat 1 76 0 226 317 41 65 chr11 97910854 97910977 -52872576 + MER5B DNA MER1_type 2 121 -57 1496 209 87 43 chr11 97910997 97911619 -52871934 + Charlie2 DNA MER1_type 2180 2828 -34 26 30 0 0 chr11 97912216 97912249 -52871304 + AT_rich Low_complexity Low_complexity 1 33 0 314 311 91 8 chr11 97913380 97913512 -52870041 + MIR SINE MIR 120 262 0 1661 194 24 0 chr11 97914618 97914948 -52868605 - L1MB3 LINE L1 -210 5973 5636 1049 326 26 42 chr11 97915034 97915534 -52868019 + L2 LINE L2 2822 3313 0 289 211 193 0 chr11 97915555 97915669 -52867884 + L1MC/D LINE L1 5666 5801 -2007 303 390 59 12 chr11 97916999 97917168 -52866385 - L3b LINE CR1 -14 1569 1393 2048 124 7 0 chr11 97917563 97917861 -52865692 - AluSx SINE Alu -12 300 1 579 279 103 18 chr11 97917933 97918205 -52865348 + L2 LINE L2 3019 3313 0 183 186 68 51 chr11 97918874 97918933 -52864620 - L2 LINE L2 -2031 1283 1224 430 219 77 58 chr11 97919311 97919466 -52864087 + MLT1J LTR MaLR 7 164 -347 212 352 23 11 chr11 97919588 97919676 -52863877 + MIR SINE MIR 64 152 -110 240 262 36 24 chr11 97920466 97920550 -52863003 + MIR SINE MIR 175 259 -3 33 0 0 0 chr11 97920554 97920587 -52862966 + AT_rich Low_complexity Low_complexity 1 33 0 1485 184 43 4 chr11 97920717 97920994 -52862559 + AluJo SINE Alu 1 288 -24 363 261 70 28 chr11 97921095 97921237 -52862316 - MIR SINE MIR -45 217 70 598 231 88 7 chr11 97921551 97921698 -52861855 - MER5A DNA MER1_type -3 186 28 1187 191 35 26 chr11 97921747 97921977 -52861576 + Tigger5 DNA MER2_type 1 232 -2091 520 164 39 10 chr11 97921995 97922099 -52861454 - L1PA16 LINE L1 -131 6035 5929 2271 209 35 2 chr11 97922113 97922621 -52860932 + L1 LINE L1 3868 4392 -1754 23 0 0 0 chr11 97923883 97923906 -52859647 + AT_rich Low_complexity Low_complexity 1 23 0 416 344 79 59 chr11 97924071 97924426 -52859127 + L2 LINE L2 2433 2794 -520 569 206 0 0 chr11 97924432 97924534 -52859019 + AluJ/FLAM SINE Alu 1 102 -210 1857 163 14 0 chr11 97924574 97924869 -52858684 + AluSx SINE Alu 1 299 -13 22 35 0 0 chr11 97924879 97924908 -52858645 + AT_rich Low_complexity Low_complexity 1 29 0 829 199 0 0 chr11 97924908 97925064 -52858489 + AluJb SINE Alu 137 292 -20 639 265 118 5 chr11 97925224 97925428 -52858125 + MIR SINE MIR 35 261 -1 1956 140 0 0 chr11 97925444 97925767 -52857786 + AluSg SINE Alu 1 323 0 11721 139 27 44 chr11 97927229 97928267 -52855286 + Tigger1 DNA MER2_type 299 1353 -1065 2278 184 2 9 chr11 97928267 97928707 -52854846 + L1PB4 LINE L1 5716 6152 -4 11721 139 27 44 chr11 97928707 97929252 -52854301 + Tigger1 DNA MER2_type 1353 1839 -579 2020 117 3 0 chr11 97929252 97929535 -52854018 - AluSx SINE Alu -7 305 22 11721 139 27 44 chr11 97929535 97930106 -52853447 + Tigger1 DNA MER2_type 1839 2418 0 404 216 34 14 chr11 97931636 97931784 -52851769 + (TA)n Simple_repeat Simple_repeat 2 152 0 256 179 13 26 chr11 97931815 97931893 -52851660 + (TA)n Simple_repeat Simple_repeat 2 78 0 1048 306 40 34 chr11 97931950 97932479 -52851074 + L1ME3A LINE L1 5353 5884 -286 180 111 0 0 chr11 97932841 97932868 -52850685 + (AGGGGG)n Simple_repeat Simple_repeat 5 31 0 253 315 0 27 chr11 97933182 97933255 -52850298 + L2 LINE L2 3239 3309 -4 21 0 0 0 chr11 97933802 97933823 -52849730 + AT_rich Low_complexity Low_complexity 1 21 0 226 294 0 0 chr11 97934333 97934384 -52849169 + (CA)n Simple_repeat Simple_repeat 2 52 0 2271 118 0 3 chr11 97934540 97934854 -52848699 + AluSq SINE Alu 1 313 0 33 25 0 0 chr11 97934915 97934955 -52848598 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr11 97935068 97935090 -52848463 + AT_rich Low_complexity Low_complexity 1 22 0 570 107 0 0 chr11 97935817 97935901 -52847652 - AluSg/x SINE Alu -12 298 215 915 139 52 6 chr11 97936763 97936936 -52846617 + L1MA9 LINE L1 6130 6310 -2 5996 108 6 10 chr11 97937120 97938052 -52845501 + L1PB2 LINE L1 5224 6151 0 267 258 0 0 chr11 97938113 97938175 -52845378 - MER94 DNA DNA -1 133 72 28 29 0 0 chr11 97938201 97938236 -52845317 + AT_rich Low_complexity Low_complexity 1 35 0 356 344 58 9 chr11 97938303 97938578 -52844975 + LTR16A LTR ERVL 34 372 -78 294 50 0 0 chr11 97938596 97938636 -52844917 + (CA)n Simple_repeat Simple_repeat 2 41 0 279 344 0 0 chr11 97938844 97938940 -52844613 - HERVL LTR ERVL -4078 1576 1481 239 283 0 0 chr11 97939817 97939870 -52843683 - L2 LINE L2 -1 3271 3219 1307 195 77 11 chr11 97940418 97940679 -52842874 + AluJo SINE Alu 1 278 -34 204 40 0 0 chr11 97940679 97940704 -52842849 + (TC)n Simple_repeat Simple_repeat 2 26 0 224 233 14 0 chr11 97940713 97940786 -52842767 + (TA)n Simple_repeat Simple_repeat 1 74 0 217 277 11 85 chr11 97941277 97941371 -52842182 - MIR SINE MIR -56 152 66 207 0 0 0 chr11 97942190 97942213 -52841340 + (A)n Simple_repeat Simple_repeat 1 23 0 1668 165 9 47 chr11 97942830 97943152 -52840401 + AluJb SINE Alu 1 310 -2 189 0 0 0 chr11 97943963 97943984 -52839569 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 241 407 39 16 chr11 97944072 97944254 -52839299 + L2 LINE L2 2633 2818 -496 190 265 21 172 chr11 97944457 97944695 -52838858 + L2 LINE L2 1594 1795 -1519 1081 199 52 131 chr11 97944777 97945165 -52838388 - MLT1A2 LTR MaLR -15 359 3 351 281 18 10 chr11 97945172 97945301 -52838252 + MER63 DNA MER1_type 694 1683 -5 21 36 0 0 chr11 97945421 97945449 -52838104 + AT_rich Low_complexity Low_complexity 1 28 0 370 326 77 10 chr11 97945606 97945802 -52837751 - LTR33A LTR ERVL -48 475 267 429 273 18 18 chr11 97945840 97945950 -52837603 + L2 LINE L2 3190 3299 -14 324 70 0 0 chr11 97946166 97946209 -52837344 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 227 154 31 62 chr11 97948833 97948898 -52834655 + T-rich Low_complexity Low_complexity 4 66 0 228 35 0 0 chr11 97949708 97949737 -52833816 + (A)n Simple_repeat Simple_repeat 1 29 0 486 241 219 26 chr11 97950614 97950879 -52832674 + MER46C DNA MER2_type 12 327 -11 49 52 0 0 chr11 97951616 97951693 -52831860 + AT_rich Low_complexity Low_complexity 1 77 0 1802 158 0 7 chr11 97951758 97952036 -52831517 - AluSx SINE Alu -36 276 1 21 0 0 0 chr11 97953005 97953026 -52830527 + AT_rich Low_complexity Low_complexity 1 21 0 2202 113 0 0 chr11 97953029 97953329 -52830224 + AluY SINE Alu 1 300 -11 1203 134 0 0 chr11 97953331 97953502 -52830051 + AluSg/x SINE Alu 126 296 -14 29 47 0 0 chr11 97954058 97954101 -52829452 + AT_rich Low_complexity Low_complexity 1 43 0 188 405 89 55 chr11 97954622 97955037 -52828516 + L2 LINE L2 2828 3256 -16 235 258 0 45 chr11 97955173 97955239 -52828314 - L2 LINE L2 0 3313 3251 411 319 72 91 chr11 97955477 97955907 -52827646 + HAL1 LINE L1 21 442 -2065 1785 241 40 7 chr11 97956010 97956462 -52827091 + L2 LINE L2 2319 2785 -529 967 303 125 7 chr11 97956470 97956902 -52826651 - L2 LINE L2 -1025 2289 1807 1828 114 106 19 chr11 97957732 97958099 -52825454 + LTR7 LTR ERV1 1 448 -2 13779 129 7 30 chr11 97958101 97960837 -52822716 + HERVH LTR ERV1 1 2995 -4718 2802 134 2 5 chr11 97960816 97961265 -52822288 + HERVH LTR ERV1 3140 3587 -4126 * 7661 152 9 6 chr11 97961259 97962660 -52820893 + HERVH LTR ERV1 3806 5149 -2287 2262 161 19 5 chr11 97962651 97963072 -52820481 + HERVH LTR ERV1 5590 6016 -1697 * 3840 88 13 11 chr11 97963065 97963621 -52819932 + HERVH LTR ERV1 7157 7713 0 2092 101 69 6 chr11 97963621 97963988 -52819565 + LTR7 LTR ERV1 1 450 0 180 299 142 55 chr11 97964401 97964528 -52819025 + MIR3 SINE MIR 37 174 -34 451 326 48 26 chr11 97964713 97964983 -52818570 + LTR16A LTR ERVL 55 330 -120 557 286 66 22 chr11 97966191 97966418 -52817135 + MIR SINE MIR 1 237 -25 352 319 24 76 chr11 97967577 97967787 -52815766 - L2 LINE L2 -102 3170 2972 1550 168 66 11 chr11 97967912 97968198 -52815355 + AluJo SINE Alu 11 312 0 214 140 20 20 chr11 97968329 97968379 -52815174 + CT-rich Low_complexity Low_complexity 4 53 0 375 23 0 0 chr11 97968379 97968423 -52815130 + (TTCC)n Simple_repeat Simple_repeat 4 47 0 975 245 33 0 chr11 97969512 97969724 -52813829 + MER20 DNA MER1_type 1 219 0 370 324 93 49 chr11 97969758 97970005 -52813548 - L3 LINE CR1 -156 1421 1164 357 312 65 43 chr11 97970083 97970269 -52813284 - MIR SINE MIR -16 246 57 252 115 39 19 chr11 97970717 97970769 -52812784 + L1MC5 LINE L1 7855 7907 -54 9519 62 0 0 chr11 97970930 97972922 -52810631 - L1PA6 LINE L1 0 6154 4163 14899 70 2 1 chr11 97972924 97974902 -52808651 + L1PA6 LINE L1 2166 4146 -2000 339 306 57 19 chr11 97975212 97975369 -52808184 + L1MC4a LINE L1 5739 5901 -1907 28 0 0 0 chr11 97975542 97975570 -52807983 + AT_rich Low_complexity Low_complexity 1 28 0 285 29 0 0 chr11 97975861 97975895 -52807658 + (TA)n Simple_repeat Simple_repeat 2 35 0 1588 204 0 3 chr11 97975898 97976187 -52807366 - AluJo SINE Alu -24 288 1 353 242 57 70 chr11 97976942 97977099 -52806454 - HAL1b LINE L1 -7 1341 1187 219 150 50 0 chr11 97977239 97977299 -52806254 + (TA)n Simple_repeat Simple_repeat 2 64 0 29 47 0 0 chr11 97977349 97977392 -52806161 + AT_rich Low_complexity Low_complexity 1 43 0 197 350 77 0 chr11 97977684 97977801 -52805752 + MIR SINE MIR 66 191 -71 21 0 0 0 chr11 97977849 97977870 -52805683 + AT_rich Low_complexity Low_complexity 1 21 0 307 258 75 145 chr11 97978106 97978334 -52805219 + MIR SINE MIR 38 249 -13 27 49 0 0 chr11 97978357 97978398 -52805155 + AT_rich Low_complexity Low_complexity 1 41 0 207 0 0 0 chr11 97979040 97979063 -52804490 + (TTTTTG)n Simple_repeat Simple_repeat 4 26 0 1801 72 4 17 chr11 97979943 97980179 -52803374 + AluSp SINE Alu 64 296 -17 531 279 74 21 chr11 97980971 97981161 -52802392 - MIR SINE MIR -58 204 5 242 239 45 57 chr11 97981262 97981350 -52802203 - MIR SINE MIR -59 203 117 387 0 0 0 chr11 97981503 97981546 -52802007 + (TG)n Simple_repeat Simple_repeat 2 44 0 306 211 89 0 chr11 97981884 97981974 -52801579 + L1 LINE L1 4729 4826 -1320 189 0 0 0 chr11 97982174 97982195 -52801358 + (A)n Simple_repeat Simple_repeat 1 21 0 298 202 83 36 chr11 97982234 97982318 -52801235 - MIR SINE MIR -155 107 20 763 212 35 0 chr11 97983024 97983194 -52800359 + MER3 DNA MER1_type 1 129 -80 198 348 116 22 chr11 97983295 97983433 -52800120 - L2 LINE L2 -189 3083 2933 409 296 43 26 chr11 97984559 97984674 -52798879 + L2 LINE L2 3187 3303 -10 758 244 6 12 chr11 97985163 97985331 -52798222 + MER45A DNA AcHobo 12 178 0 543 223 18 0 chr11 97986371 97986483 -52797070 + FLAM_C SINE Alu 3 116 -27 243 0 0 0 chr11 97986485 97986512 -52797041 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 6492 160 9 2 chr11 97987025 97988039 -52795514 + L1MA3 LINE L1 320 1340 -6225 3206 197 19 3 chr11 97988036 97989066 -52794487 + L1MA3 LINE L1 3339 4385 -3180 * 4978 143 33 8 chr11 97989045 97990355 -52793198 + L1MA3 LINE L1 6346 7715 -1 205 182 0 0 chr11 97990401 97990434 -52793119 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 32 57 0 0 chr11 97991038 97991091 -52792462 + AT_rich Low_complexity Low_complexity 1 53 0 598 266 36 81 chr11 97991429 97991651 -52791902 + MIR SINE MIR 30 241 -21 397 187 44 11 chr11 97992540 97992631 -52790922 - MER94 DNA DNA -36 98 5 180 0 0 0 chr11 97993790 97993810 -52789743 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 291 269 186 0 chr11 97994183 97994339 -52789214 - MIR SINE MIR -7 255 71 405 295 233 0 chr11 97994718 97994850 -52788703 + MIR SINE MIR 2 102 -160 396 0 0 0 chr11 97994850 97994894 -52788659 + (TAA)n Simple_repeat Simple_repeat 2 45 0 405 295 233 0 chr11 97994894 97994971 -52788582 + MIR SINE MIR 102 260 -2 190 319 42 42 chr11 97995040 97995184 -52788369 + L3 LINE CR1 1273 1416 -161 21 82 0 0 chr11 97996035 97996084 -52787469 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr11 97996338 97996366 -52787187 + AT_rich Low_complexity Low_complexity 1 28 0 530 352 39 23 chr11 97996505 97996761 -52786792 + MIR SINE MIR 3 262 0 2231 113 0 0 chr11 97999226 97999527 -52784026 - AluSg SINE Alu -9 301 1 314 294 48 8 chr11 97999555 97999681 -52783872 - L1ME LINE L1 -481 5640 5510 21 0 0 0 chr11 98000177 98000198 -52783355 + AT_rich Low_complexity Low_complexity 1 21 0 1396 182 16 75 chr11 98000202 98000509 -52783044 + AluJb SINE Alu 1 289 -23 321 316 80 70 chr11 98000600 98001227 -52782326 - L1ME LINE L1 -1722 4424 3792 545 290 79 43 chr11 98001644 98002061 -52781492 + L1ME4a LINE L1 5513 5944 -177 41321 59 5 0 chr11 98002677 98008856 -52774697 + L1PA5 LINE L1 11 6216 0 1500 101 0 21 chr11 98009464 98009701 -52773852 - L1MA5A LINE L1 -5 6292 6061 1434 241 37 49 chr11 98011013 98011563 -52771990 + L1ME1 LINE L1 5616 6148 -16 278 274 78 10 chr11 98011940 98012042 -52771511 - MER103 DNA DNA -50 116 8 238 383 142 7 chr11 98012515 98012656 -52770897 - L2 LINE L2 -1 3271 3112 1356 93 10 36 chr11 98013510 98013704 -52769849 + AluSq SINE Alu 1 189 -124 629 180 167 27 chr11 98014208 98014358 -52769195 + MER2 DNA MER2_type 1 171 -174 252 135 48 48 chr11 98014625 98014729 -52768824 + (TTATA)n Simple_repeat Simple_repeat 4 107 0 335 119 48 36 chr11 98014758 98014926 -52768627 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 * 427 23 64 70 chr11 98014899 98015070 -52768483 + (TA)n Simple_repeat Simple_repeat 1 170 0 352 243 23 29 chr11 98015077 98015250 -52768303 + (TATAA)n Simple_repeat Simple_repeat 5 176 0 25 91 0 0 chr11 98015300 98015355 -52768198 + AT_rich Low_complexity Low_complexity 1 55 0 25 157 0 0 chr11 98015622 98015673 -52767880 + GC_rich Low_complexity Low_complexity 1 51 0 190 319 42 42 chr11 98016782 98016926 -52766627 - L3 LINE CR1 -161 1416 1273 405 295 233 0 chr11 98016995 98017072 -52766481 - MIR SINE MIR -2 260 202 396 0 0 0 chr11 98017072 98017116 -52766437 + (TTA)n Simple_repeat Simple_repeat 2 45 0 405 295 233 0 chr11 98017116 98017248 -52766305 - MIR SINE MIR -60 202 2 291 269 186 0 chr11 98017627 98017783 -52765770 + MIR SINE MIR 71 255 -7 180 0 0 0 chr11 98018156 98018176 -52765377 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 397 187 44 11 chr11 98019334 98019425 -52764128 + MER94 DNA DNA 5 98 -36 607 266 36 81 chr11 98020314 98020536 -52763017 - MIR SINE MIR -21 241 30 32 57 0 0 chr11 98020874 98020927 -52762626 + AT_rich Low_complexity Low_complexity 1 53 0 227 154 31 62 chr11 98023394 98023459 -52760094 + T-rich Low_complexity Low_complexity 4 66 0 228 35 0 0 chr11 98024269 98024298 -52759255 + (A)n Simple_repeat Simple_repeat 1 29 0 501 241 219 26 chr11 98025175 98025440 -52758113 + MER46C DNA MER2_type 12 327 -11 1670 132 17 0 chr11 98026589 98026877 -52756676 - L1MA9 LINE L1 -5 6307 6015 278 295 0 57 chr11 98027964 98028086 -52755467 + L2 LINE L2 3155 3269 -3 437 302 41 107 chr11 98028128 98028370 -52755183 + MIR SINE MIR 8 233 -29 289 340 20 0 chr11 98028588 98028688 -52754865 + L2 LINE L2 3212 3313 0 383 89 25 38 chr11 98028850 98028929 -52754624 - L1MA3 LINE L1 0 6305 6228 1807 158 0 0 chr11 98029089 98029362 -52754191 + AluSx SINE Alu 4 276 -36 387 0 0 0 chr11 98029368 98029411 -52754142 + (GA)n Simple_repeat Simple_repeat 2 44 0 295 313 0 0 chr11 98029686 98029766 -52753787 + LTR50 LTR ERVL 1 80 -715 4103 173 57 39 chr11 98030018 98031646 -52751907 + L1MA9 LINE L1 4632 6281 -31 2154 191 29 107 chr11 98031879 98032364 -52751189 + L1MC3 LINE L1 7002 7424 -361 357 98 0 16 chr11 98032364 98032425 -52751128 - L1PA13 LINE L1 -3 6160 6101 2154 191 29 107 chr11 98032425 98032594 -52750959 + L1MC3 LINE L1 7424 7605 -180 1424 156 55 14 chr11 98032707 98032996 -52750557 - L1MA4 LINE L1 -3 6297 5997 573 115 0 0 chr11 98032999 98033086 -52750467 + (TA)n Simple_repeat Simple_repeat 1 87 0 2692 177 6 23 chr11 98033102 98033927 -52749626 - L1MA4 LINE L1 -532 5768 4961 3374 159 21 102 chr11 98033936 98034823 -52748730 + L1 LINE L1 3893 4708 -1438 336 173 37 12 chr11 98035179 98035260 -52748293 + L1MA9 LINE L1 6157 6239 -73 266 293 0 0 chr11 98035380 98035455 -52748098 + MLT1I LTR MaLR 309 383 -26 347 312 70 67 chr11 98035667 98035952 -52747601 - L2 LINE L2 0 3313 3028 695 313 121 50 chr11 98036878 98037357 -52746196 + MLT1K LTR MaLR 72 584 -4 1247 124 5 5 chr11 98037405 98037591 -52745962 + AluJo SINE Alu 126 311 -1 2141 122 7 0 chr11 98038403 98038706 -52744847 + AluSq SINE Alu 1 305 -8 330 278 56 21 chr11 98039247 98039391 -52744162 + MER110 LTR ERV1 329 477 -14 212 277 0 0 chr11 98040584 98040631 -52742922 - MIR SINE MIR -150 112 66 216 175 0 0 chr11 98041244 98041284 -52742269 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 305 346 0 9 chr11 98041400 98041507 -52742046 - MIR SINE MIR -6 256 151 198 0 0 0 chr11 98041535 98041557 -52741996 + (T)n Simple_repeat Simple_repeat 1 22 0 1639 159 6 40 chr11 98041840 98041913 -52741640 - AluJb SINE Alu -2 310 236 3445 159 29 2 chr11 98041913 98042531 -52741022 - MER41B LTR ERV1 0 635 1 1639 159 6 40 chr11 98042531 98042778 -52740775 - AluJb SINE Alu -76 236 1 662 276 56 89 chr11 98042778 98043241 -52740312 - MLT1G1 LTR MaLR -56 499 1 627 254 99 20 chr11 98046039 98046240 -52737313 + MIR SINE MIR 46 262 0 1063 240 32 0 chr11 98046848 98047065 -52736488 + MER58A DNA MER1_type 1 224 0 196 363 58 35 chr11 98047069 98047240 -52736313 - L2 LINE L2 -2912 402 228 247 265 12 36 chr11 98048622 98048705 -52734848 - L2 LINE L2 0 3272 3192 219 139 0 0 chr11 98049143 98049179 -52734374 + L3 LINE CR1 1533 1568 -9 2797 189 32 49 chr11 98049989 98050673 -52732880 + L1MA9 LINE L1 5509 6184 0 355 290 84 30 chr11 98050893 98051024 -52732529 - L2 LINE L2 -2 3270 3133 194 314 23 58 chr11 98051587 98051673 -52731880 + L2 LINE L2 3213 3295 -18 1658 184 14 0 chr11 98051876 98052158 -52731395 + AluJo SINE Alu 1 286 -26 461 134 21 21 chr11 98052662 98052759 -52730794 - L1MC2 LINE L1 -156 6188 6092 3532 181 10 10 chr11 98052848 98053521 -52730032 - L1MC1 LINE L1 -2 6331 5659 216 348 159 14 chr11 98053695 98053833 -52729720 + MIR SINE MIR 30 187 -75 2027 123 0 23 chr11 98053873 98054173 -52729380 + AluSc SINE Alu 1 293 -16 29 28 0 0 chr11 98054501 98054537 -52729016 + AT_rich Low_complexity Low_complexity 1 36 0 357 280 63 51 chr11 98054671 98054846 -52728707 + MIR SINE MIR 31 207 -55 22 35 0 0 chr11 98055102 98055131 -52728422 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 98055150 98055171 -52728382 + AT_rich Low_complexity Low_complexity 1 21 0 324 308 40 81 chr11 98056132 98056330 -52727223 - MLT1K LTR MaLR -214 374 185 262 345 18 0 chr11 98056356 98056469 -52727084 - MIR3 SINE MIR -3 205 91 237 211 19 39 chr11 98056574 98056678 -52726875 + GA-rich Low_complexity Low_complexity 3 104 0 2023 139 3 0 chr11 98057138 98057433 -52726120 - AluSq SINE Alu -17 296 1 2238 215 100 31 chr11 98058108 98058786 -52724767 + MER50 LTR ERV1 10 734 0 1826 86 8 12 chr11 98058835 98059079 -52724474 - AluY SINE Alu -68 243 1 23 0 0 0 chr11 98059202 98059225 -52724328 + AT_rich Low_complexity Low_complexity 1 23 0 450 289 127 13 chr11 98059380 98059608 -52723945 + L1ME3A LINE L1 2146 2399 -3997 1075 62 0 0 chr11 98059638 98059813 -52723740 + AluY SINE Alu 153 327 0 293 250 26 0 chr11 98059899 98059975 -52723578 + L1ME3A LINE L1 2822 2899 -3316 239 290 22 78 chr11 98060024 98060071 -52723482 + L1ME3A LINE L1 5043 5091 -1124 3539 100 70 21 chr11 98060071 98060639 -52722914 - MER4A LTR ERV1 0 600 5 239 290 22 78 chr11 98060639 98060743 -52722810 + L1ME3A LINE L1 5091 5175 -1040 2029 117 32 0 chr11 98060743 98061025 -52722528 + AluSg SINE Alu 3 293 -17 239 290 22 78 chr11 98061025 98061141 -52722412 + L1ME3A LINE L1 5175 5296 -919 318 150 0 33 chr11 98061159 98061219 -52722334 + L1ME3A LINE L1 5444 5501 -734 575 273 16 0 chr11 98061239 98061422 -52722131 + L1ME3A LINE L1 5866 6051 -188 1294 231 31 7 chr11 98061492 98061782 -52721771 - AluJb SINE Alu -5 297 1 5019 190 35 34 chr11 98061817 98062307 -52721246 - L1PA15 LINE L1 0 6816 6328 2421 82 3 0 chr11 98062307 98062612 -52720941 - AluY SINE Alu -5 306 1 5019 190 35 34 chr11 98062612 98063951 -52719602 - L1PA15 LINE L1 -488 6328 4990 443 218 77 6 chr11 98063953 98064123 -52719430 - L1PA15 LINE L1 -2859 3938 3757 * 928 298 76 26 chr11 98064101 98064524 -52719029 - L1PA15 LINE L1 -5178 1609 1166 2344 118 36 8 chr11 98064553 98064916 -52718637 + THE1C LTR MaLR 1 373 -2 2332 289 59 30 chr11 98064942 98065721 -52717832 - L1PA15 LINE L1 -5985 802 1 1019 276 64 84 chr11 98065763 98065992 -52717561 + L1M4 LINE L1 3504 3736 -2410 2300 91 3 3 chr11 98065992 98066300 -52717253 + AluY SINE Alu 1 308 -3 1019 276 64 84 chr11 98066300 98066595 -52716958 + L1M4 LINE L1 3736 4035 -2111 742 11 0 0 chr11 98066595 98066683 -52716870 - L1PA2 LINE L1 -2 6153 6066 1019 276 64 84 chr11 98066683 98067326 -52716227 + L1M4 LINE L1 4035 4649 -1497 190 70 0 47 chr11 98067569 98067612 -52715941 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 1856 167 121 21 chr11 98067781 98068170 -52715383 + MSTA LTR MaLR 1 428 0 1969 128 40 40 chr11 98069150 98069525 -52714028 - THE1C LTR MaLR 0 375 1 239 220 20 0 chr11 98069902 98069952 -52713601 + G-rich Low_complexity Low_complexity 5 55 0 1088 278 79 42 chr11 98070265 98070693 -52712860 + L2 LINE L2 2866 3309 -4 186 333 0 0 chr11 98070730 98070778 -52712775 - MIR SINE MIR -69 139 92 948 195 32 71 chr11 98071268 98071739 -52711814 - MLT1C LTR MaLR -52 415 1 1596 220 62 15 chr11 98071873 98072278 -52711275 - MER63B DNA MER1_type -2 434 11 553 298 90 27 chr11 98072284 98072583 -52710970 + L2 LINE L2 2988 3305 -8 230 366 75 0 chr11 98073415 98073508 -52710045 - MER91A DNA MER1_type -3 193 94 273 57 0 0 chr11 98075117 98075152 -52708401 + (TCCCC)n Simple_repeat Simple_repeat 5 39 0 1686 142 0 0 chr11 98075153 98075386 -52708167 - AluSx SINE Alu -32 280 48 25 31 0 0 chr11 98075483 98075515 -52708038 + AT_rich Low_complexity Low_complexity 1 32 0 1456 220 7 10 chr11 98076180 98076471 -52707082 - AluJb SINE Alu -20 292 3 359 277 48 58 chr11 98076476 98076664 -52706889 + HAL1 LINE L1 2321 2506 -1 406 297 107 30 chr11 98077151 98077451 -52706102 + L1M4 LINE L1 4630 4952 -1194 2770 198 48 23 chr11 98077503 98078110 -52705443 + MER67C LTR ERV1 67 688 -22 1746 150 71 46 chr11 98078154 98078520 -52705033 - THE1C LTR MaLR 0 375 1 290 341 120 30 chr11 98079335 98079502 -52704051 + MIR SINE MIR 1 182 -80 281 264 54 103 chr11 98079502 98079716 -52703837 - MER112 DNA MER1_type -5 255 55 9501 90 4 27 chr11 98079716 98081201 -52702352 + L1PA7 LINE L1 3989 5438 -716 2139 113 0 0 chr11 98081201 98081484 -52702069 + AluSx SINE Alu 13 295 -17 9501 90 4 27 chr11 98081484 98082179 -52701374 + L1PA7 LINE L1 5438 6147 -7 281 264 54 103 chr11 98082179 98082225 -52701328 - MER112 DNA MER1_type -205 55 8 1298 210 66 33 chr11 98083182 98083544 -52700009 - MLT1A2 LTR MaLR 0 374 1 510 303 34 34 chr11 98083853 98084028 -52699525 + MER5B DNA MER1_type 4 178 0 411 305 175 7 chr11 98084044 98084198 -52699355 - MER5A DNA MER1_type -6 183 4 21 0 0 0 chr11 98084207 98084228 -52699325 + AT_rich Low_complexity Low_complexity 1 21 0 548 268 69 65 chr11 98084586 98084725 -52698828 - MIR SINE MIR 0 262 120 1858 199 28 15 chr11 98084725 98085116 -52698437 + MSTD LTR MaLR 1 396 0 548 268 69 65 chr11 98085116 98085222 -52698331 - MIR SINE MIR -142 120 16 240 264 165 0 chr11 98085382 98085473 -52698080 + L2 LINE L2 3208 3313 0 197 343 96 0 chr11 98085477 98085550 -52698003 - L2 LINE L2 -690 2624 2545 318 210 0 0 chr11 98086179 98086241 -52697312 + L1ME4a LINE L1 6050 6111 -10 216 395 150 6 chr11 98087314 98087481 -52696072 - L2 LINE L2 -93 3179 2989 355 263 85 51 chr11 98087627 98087863 -52695690 - HAL1 LINE L1 0 2507 2264 24 32 0 0 chr11 98087993 98088024 -52695529 + AT_rich Low_complexity Low_complexity 1 31 0 358 265 35 53 chr11 98088030 98088200 -52695353 - HAL1b LINE L1 -437 911 745 683 118 36 0 chr11 98088464 98088574 -52694979 - L1PB4 LINE L1 0 6156 6043 273 348 58 0 chr11 98089048 98089203 -52694350 - MLT1J LTR MaLR -347 164 1 1564 185 49 14 chr11 98089565 98089852 -52693701 + AluJb SINE Alu 3 299 -13 240 310 30 10 chr11 98090178 98090278 -52693275 + MSTD-int LTR MaLR 1 102 -1269 2565 52 0 3 chr11 98090840 98091150 -52692403 - AluY SINE Alu -2 309 1 625 300 43 6 chr11 98091769 98092020 -52691533 + MLT1H1 LTR MaLR 4 267 -323 182 275 12 0 chr11 98092022 98092102 -52691451 + GA-rich Low_complexity Low_complexity 2 82 0 1118 207 19 129 chr11 98092131 98092215 -52691338 - MLT1A2 LTR MaLR 0 374 282 2075 121 3 0 chr11 98092215 98092505 -52691048 - AluY SINE Alu -20 291 1 1118 207 19 129 chr11 98092505 98092840 -52690713 - MLT1A2 LTR MaLR -92 282 1 393 250 19 81 chr11 98092846 98093006 -52690547 + MLT1H1 LTR MaLR 440 589 -1 448 340 0 29 chr11 98093345 98093551 -52690002 + L1ME LINE L1 31 230 -5840 232 225 28 0 chr11 98094207 98094278 -52689275 + (TA)n Simple_repeat Simple_repeat 2 74 0 238 231 46 31 chr11 98094810 98094875 -52688678 + MIR SINE MIR 88 153 -109 184 353 24 12 chr11 98095042 98095127 -52688426 - MIR SINE MIR -10 252 167 2567 62 0 0 chr11 98095211 98095520 -52688033 + AluY SINE Alu 2 310 -1 28 71 0 0 chr11 98095853 98095909 -52687644 + AT_rich Low_complexity Low_complexity 1 56 0 310 275 11 11 chr11 98096009 98096100 -52687453 + GA-rich Low_complexity Low_complexity 1 91 0 289 171 0 57 chr11 98097996 98098066 -52685487 - MLT1J2 LTR MaLR -21 429 364 246 331 52 78 chr11 98098140 98098294 -52685259 + L2 LINE L2 3037 3186 -86 229 237 0 0 chr11 98098471 98098509 -52685044 - L2 LINE L2 -25 3247 3210 1532 168 69 39 chr11 98098583 98098947 -52684606 - THE1C LTR MaLR 0 375 1 5975 137 40 17 chr11 98098947 98099925 -52683628 - THE1C-int LTR MaLR 0 1580 581 1011 176 71 34 chr11 98099926 98100164 -52683389 - THE1B LTR MaLR -117 247 1 246 217 33 0 chr11 98100542 98100602 -52682951 - MLT1K LTR MaLR -7 581 520 252 268 0 28 chr11 98100866 98100937 -52682616 - MLT1K LTR MaLR -339 249 181 1957 126 0 74 chr11 98100991 98101316 -52682237 + AluSx SINE Alu 3 303 -9 214 306 0 0 chr11 98102783 98102855 -52680698 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 2158 141 24 27 chr11 98102855 98103231 -52680322 - THE1C LTR MaLR 0 375 1 9996 126 19 29 chr11 98103231 98104827 -52678726 - THE1C-int LTR MaLR 0 1580 1 1916 130 34 48 chr11 98104831 98105184 -52678369 - THE1C LTR MaLR -26 349 2 549 197 0 16 chr11 98105287 98105414 -52678139 + L1MA3 LINE L1 6181 6305 0 2073 233 66 46 chr11 98105439 98106966 -52676587 + L1ME2 LINE L1 4626 6287 -4 401 254 44 0 chr11 98106987 98107101 -52676452 + L1ME1 LINE L1 6041 6159 -7 1305 253 32 72 chr11 98107491 98108049 -52675504 - L1ME1 LINE L1 -5 6161 5626 2231 111 10 0 chr11 98108335 98108641 -52674912 + AluSc SINE Alu 1 309 0 5481 229 18 2 chr11 98108997 98111111 -52672442 - L1PA16 LINE L1 -3 6163 3989 29 0 0 0 chr11 98112359 98112388 -52671165 + AT_rich Low_complexity Low_complexity 1 29 0 240 317 104 33 chr11 98112475 98112658 -52670895 + L2 LINE L2 3118 3313 0 25 51 0 0 chr11 98112783 98112822 -52670731 + AT_rich Low_complexity Low_complexity 1 39 0 392 326 0 0 chr11 98113756 98113854 -52669699 - L2 LINE L2 -1 3271 3174 1178 179 37 88 chr11 98113904 98114177 -52669376 + AluJo SINE Alu 30 288 -24 21 0 0 0 chr11 98114179 98114200 -52669353 + AT_rich Low_complexity Low_complexity 1 21 0 277 62 42 0 chr11 98114648 98114696 -52668857 + (GGA)n Simple_repeat Simple_repeat 2 51 0 257 299 45 45 chr11 98114822 98115023 -52668530 + L1ME LINE L1 388 588 -5617 442 288 31 12 chr11 98115350 98115510 -52668043 + L1ME LINE L1 1826 1988 -4408 314 311 10 10 chr11 98115512 98115615 -52667938 + L1MEc LINE L1 1721 1823 -4573 225 241 0 0 chr11 98115675 98115729 -52667824 + L1ME1 LINE L1 884 937 -5133 1743 264 70 19 chr11 98115787 98116842 -52666711 + L1ME1 LINE L1 4738 5881 -219 1654 253 111 13 chr11 98116852 98116986 -52666567 + L1M4 LINE L1 3805 3924 -2222 216 0 0 0 chr11 98116986 98117010 -52666543 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1654 253 111 13 chr11 98117010 98117568 -52665985 + L1M4 LINE L1 3924 4565 -1581 891 207 6 0 chr11 98117568 98117737 -52665816 - MSTD LTR MaLR 0 396 227 21 0 0 0 chr11 98117762 98117783 -52665770 + AT_rich Low_complexity Low_complexity 1 21 0 311 229 83 18 chr11 98117860 98117969 -52665584 + MIR SINE MIR 85 200 -62 369 92 92 0 chr11 98118004 98118069 -52665484 - MLT2A2 LTR ERVL 0 453 383 23 0 0 0 chr11 98118141 98118164 -52665389 + AT_rich Low_complexity Low_complexity 1 23 0 2113 126 3 0 chr11 98118327 98118621 -52664932 - AluSq SINE Alu -18 295 1 232 280 53 13 chr11 98118718 98118793 -52664760 - L2 LINE L2 -36 3236 3159 2977 168 23 18 chr11 98118933 98119538 -52664015 + L1MA10 LINE L1 5698 6140 -24 1621 176 16 40 chr11 98120175 98120551 -52663002 + L1MA7 LINE L1 5918 6284 -7 23 54 0 0 chr11 98122582 98122619 -52660934 + AT_rich Low_complexity Low_complexity 1 37 0 499 318 31 14 chr11 98122762 98122985 -52660568 + MIR SINE MIR 30 256 -6 356 162 64 52 chr11 98124121 98124294 -52659259 + (TATATG)n Simple_repeat Simple_repeat 3 177 0 1115 230 18 69 chr11 98124314 98124730 -52658823 - L1ME1 LINE L1 -8 6239 5845 * 1688 221 81 8 chr11 98124711 98125271 -52658282 - L1ME1 LINE L1 -631 5604 5013 806 99 58 12 chr11 98125292 98125464 -52658089 + CT-rich Low_complexity Low_complexity 1 180 0 525 259 25 6 chr11 98125464 98125626 -52657927 - L1ME1 LINE L1 -1200 5015 4851 779 270 19 19 chr11 98125666 98125881 -52657672 - L1ME1 LINE L1 -6146 250 36 233 302 0 0 chr11 98126162 98126215 -52657338 + L2 LINE L2 3004 3056 -257 290 53 0 0 chr11 98126239 98126277 -52657276 + MADE1 DNA Mariner 36 73 -7 622 369 19 19 chr11 98126708 98126971 -52656582 + L3 LINE CR1 1250 1512 -65 619 350 46 37 chr11 98127053 98127580 -52655973 + L2 LINE L2 2490 3024 -248 468 356 5 32 chr11 98127893 98128081 -52655472 - MIR3 SINE MIR -6 202 20 492 317 111 41 chr11 98129039 98129481 -52654072 - MLT1J LTR MaLR -30 481 9 372 283 135 51 chr11 98131009 98131246 -52652307 - MLT1J LTR MaLR -249 262 6 269 348 99 7 chr11 98131834 98131975 -52651578 - L2 LINE L2 -15 3257 3104 186 43 0 0 chr11 98132164 98132187 -52651366 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 269 170 0 0 chr11 98132330 98132377 -52651176 - L2 LINE L2 0 3313 3267 233 389 80 58 chr11 98133453 98133764 -52649789 - L2 LINE L2 -67 3205 2888 416 304 22 22 chr11 98133869 98134007 -52649546 - L2 LINE L2 -1 3271 3134 181 318 106 24 chr11 98134116 98134201 -52649352 + MIR3 SINE MIR 117 208 0 247 169 8 169 chr11 98134694 98134812 -52648741 + MIR SINE MIR 66 164 -98 546 136 10 0 chr11 98135094 98135197 -52648356 - L1MA9 LINE L1 0 6312 6209 1125 181 109 68 chr11 98136058 98136379 -52647174 + MLT1D LTR MaLR 6 339 -166 1152 206 6 108 chr11 98136411 98136736 -52646817 + AluSp SINE Alu 9 300 -13 642 223 0 0 chr11 98136752 98136882 -52646671 + MLT1D LTR MaLR 374 503 -2 361 384 58 0 chr11 98137088 98137226 -52646327 - L2 LINE L2 0 3272 3127 1988 118 0 17 chr11 98137625 98137952 -52645601 + AluSq SINE Alu 1 322 0 288 323 26 99 chr11 98138215 98138273 -52645280 + MIR SINE MIR 77 138 -124 2283 75 0 17 chr11 98138273 98138568 -52644985 - AluSc SINE Alu -18 291 2 288 323 26 99 chr11 98138568 98138701 -52644852 + MIR SINE MIR 138 254 -8 333 0 0 0 chr11 98139911 98139948 -52643605 + (TG)n Simple_repeat Simple_repeat 2 38 0 2193 135 0 0 chr11 98141917 98142229 -52641324 - AluSx SINE Alu 0 312 1 240 321 24 12 chr11 98142450 98142534 -52641019 + L2 LINE L2 3229 3313 0 22 0 0 0 chr11 98143881 98143903 -52639650 + AT_rich Low_complexity Low_complexity 1 22 0 225 380 80 7 chr11 98144420 98144557 -52638996 - MIR SINE MIR -109 153 7 550 156 18 0 chr11 98144628 98144737 -52638816 - Charlie5 DNA MER1_type -28 2584 2474 572 167 0 0 chr11 98144853 98144949 -52638604 + AluJo SINE Alu 38 133 -179 323 266 0 43 chr11 98144956 98145050 -52638503 - L1MC4 LINE L1 -1339 6703 6614 319 322 0 0 chr11 98144978 98145068 -52638485 + L1MC4 LINE L1 6614 6703 -1339 * 264 226 71 0 chr11 98145072 98145156 -52638397 - L1MC4 LINE L1 -1339 6703 6614 219 36 0 0 chr11 98145157 98145185 -52638368 + (CA)n Simple_repeat Simple_repeat 1 28 0 937 130 0 7 chr11 98145188 98145326 -52638227 + AluJo SINE Alu 133 269 -43 231 61 0 0 chr11 98145326 98145359 -52638194 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 180 0 0 0 chr11 98145358 98145378 -52638175 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 * 289 311 109 8 chr11 98146949 98147068 -52636485 - MIR3 SINE MIR -8 200 70 464 321 111 11 chr11 98147563 98147753 -52635800 - MIR SINE MIR -34 228 20 2866 140 22 28 chr11 98147764 98148301 -52635252 - L1MA8 LINE L1 -6 6285 5752 337 169 127 0 chr11 98148354 98148425 -52635128 - MER116 DNA Mariner 0 80 1 225 282 56 0 chr11 98148438 98148509 -52635044 - MIR SINE MIR -12 250 176 352 293 13 60 chr11 98148585 98148735 -52634818 - MIR SINE MIR -112 150 8 1986 135 41 3 chr11 98148973 98149292 -52634261 - MLT1B LTR MaLR -2 388 58 188 351 18 0 chr11 98149911 98149968 -52633585 - MIR SINE MIR -131 77 20 292 339 103 18 chr11 98150064 98150288 -52633265 + MIR SINE MIR 20 262 0 212 143 24 0 chr11 98150368 98150410 -52633143 + (TA)n Simple_repeat Simple_repeat 2 44 0 32 26 0 0 chr11 98150838 98150877 -52632676 + AT_rich Low_complexity Low_complexity 1 39 0 184 324 152 14 chr11 98150882 98151027 -52632526 - MIR SINE MIR -6 256 92 1155 213 62 0 chr11 98151521 98151746 -52631807 - MER8 DNA MER2_type 0 239 1 774 114 0 65 chr11 98152631 98152754 -52630799 - FAM SINE Alu -12 173 59 187 400 36 18 chr11 98153204 98153314 -52630239 + MIR SINE MIR 20 131 -131 3378 130 8 11 chr11 98154136 98154665 -52628888 + MER1A DNA MER1_type 1 527 0 281 302 3 3 chr11 98154809 98154985 -52628568 - L1ME LINE L1 -300 5870 5695 237 234 0 0 chr11 98155960 98156024 -52627529 + (CCTAT)n Simple_repeat Simple_repeat 5 68 0 239 167 42 0 chr11 98156411 98156459 -52627094 - L1ME4a LINE L1 -99 6022 5973 23 0 0 0 chr11 98156837 98156860 -52626693 + AT_rich Low_complexity Low_complexity 1 23 0 329 213 25 81 chr11 98157086 98157246 -52626307 - L1ME4a LINE L1 -299 5822 5672 488 68 82 0 chr11 98157494 98157567 -52625986 - MADE1 DNA Mariner -1 79 1 1774 154 11 3 chr11 98159611 98159926 -52623627 + AluSx SINE Alu 1 317 0 183 209 187 44 chr11 98161062 98161153 -52622400 + MIR3 SINE MIR 3 106 -102 222 37 0 0 chr11 98161204 98161231 -52622322 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 622 275 131 18 chr11 98161449 98161550 -52622003 - MIR SINE MIR -1 261 173 234 0 0 0 chr11 98161550 98161576 -52621977 + (TTA)n Simple_repeat Simple_repeat 2 27 0 622 275 131 18 chr11 98161576 98161696 -52621857 - MIR SINE MIR -89 173 15 202 342 0 35 chr11 98161713 98161827 -52621726 + MER5A DNA MER1_type 74 183 -6 215 259 46 107 chr11 98162563 98162623 -52620930 + L3 LINE CR1 639 688 -889 1485 180 62 3 chr11 98162623 98162912 -52620641 + AluJo SINE Alu 1 306 -6 215 259 46 107 chr11 98162912 98162982 -52620571 + L3 LINE CR1 688 761 -816 682 271 279 35 chr11 98163043 98163619 -52619934 + L3 LINE CR1 859 1575 -2 1666 171 51 20 chr11 98163878 98164230 -52619323 + MLT1A1 LTR MaLR 1 363 -2 2336 68 3 10 chr11 98164275 98164585 -52618968 - AluY SINE Alu -3 308 1 320 355 101 53 chr11 98164629 98165085 -52618468 + L2 LINE L2 2818 3295 -18 222 275 14 29 chr11 98165208 98165277 -52618276 - MIR SINE MIR -74 188 121 1082 197 28 178 chr11 98165444 98165707 -52617846 - MLT1A2 LTR MaLR -7 367 193 6565 65 16 0 chr11 98165707 98166651 -52616902 + L1PA7 LINE L1 5186 6143 -11 1082 197 28 178 chr11 98166651 98166819 -52616734 - MLT1A2 LTR MaLR -181 193 1 987 284 80 25 chr11 98168842 98169531 -52614022 - L1M4 LINE L1 -1036 5110 4384 243 246 15 15 chr11 98169596 98169661 -52613892 + CT-rich Low_complexity Low_complexity 1 65 0 2096 105 0 3 chr11 98169982 98170309 -52613244 - AluY SINE Alu 0 326 1 27 0 0 0 chr11 98170309 98170336 -52613217 + AT_rich Low_complexity Low_complexity 1 27 0 5277 175 66 10 chr11 98170336 98170354 -52613199 - L1PA15 LINE L1 -1 6815 6799 8836 43 5 1 chr11 98170354 98172223 -52611330 - L1PA4 LINE L1 -2 6153 4279 5277 175 66 10 chr11 98172223 98173917 -52609636 - L1PA15 LINE L1 -17 6799 4989 2587 269 72 48 chr11 98173911 98175262 -52608291 - L1PA15 LINE L1 -5122 1665 1 * 1461 203 73 22 chr11 98175459 98175814 -52607739 - L1MA4 LINE L1 -6 6294 5922 216 0 0 0 chr11 98175926 98175950 -52607603 + (TA)n Simple_repeat Simple_repeat 2 25 0 250 302 179 9 chr11 98176166 98176272 -52607281 - L2 LINE L2 -8 3264 3141 239 269 158 35 chr11 98176713 98176884 -52606669 + MIR SINE MIR 36 227 -35 540 285 29 7 chr11 98177158 98177295 -52606258 + MER5B DNA MER1_type 2 141 -37 708 310 4 29 chr11 98177830 98178072 -52605481 + MIR SINE MIR 2 237 -25 1390 132 58 61 chr11 98178296 98178607 -52604946 + L1MA7 LINE L1 5832 6141 -150 837 228 0 0 chr11 98178613 98178775 -52604778 - FRAM SINE Alu -17 159 1 875 157 7 13 chr11 98178802 98178955 -52604598 + AluJb SINE Alu 148 299 -13 832 151 7 0 chr11 98178961 98179113 -52604440 + L1MA7 LINE L1 6139 6291 0 299 342 127 0 chr11 98180100 98180258 -52603295 - MIR SINE MIR -36 226 49 3706 43 9 2 chr11 98180449 98180909 -52602644 - L1PA5 LINE L1 -6 6148 5686 1279 40 0 0 chr11 98180941 98181093 -52602460 + L1PA3 LINE L1 5999 6150 -5 384 310 95 28 chr11 98181696 98182096 -52601457 - L1ME4a LINE L1 -4 6117 5691 180 307 93 13 chr11 98182203 98182278 -52601275 - MIR SINE MIR -104 158 78 1820 172 0 3 chr11 98182768 98183070 -52600483 - AluJb SINE Alu -11 301 1 323 275 143 21 chr11 98183325 98183428 -52600125 + MIR SINE MIR 8 97 -165 186 43 0 0 chr11 98183428 98183451 -52600102 + (TTG)n Simple_repeat Simple_repeat 2 24 0 323 275 143 21 chr11 98183451 98183536 -52600017 + MIR SINE MIR 97 219 -43 534 276 111 3 chr11 98183991 98184190 -52599363 + MIR SINE MIR 1 214 -48 6125 185 12 12 chr11 98184608 98186209 -52597344 - L1MC1 LINE L1 0 6333 4733 254 200 12 100 chr11 98186508 98186588 -52596965 - MIR SINE MIR -61 147 75 504 106 0 0 chr11 98187118 98187203 -52596350 + (TG)n Simple_repeat Simple_repeat 2 86 0 315 297 22 11 chr11 98188525 98188616 -52594937 - MER5B DNA MER1_type -86 92 1 213 154 26 0 chr11 98188772 98188811 -52594742 + T-rich Low_complexity Low_complexity 1 40 0 409 276 201 22 chr11 98189150 98189473 -52594080 - L1MC/D LINE L1 -2019 5789 5409 297 150 42 8 chr11 98189600 98189720 -52593833 + (TA)n Simple_repeat Simple_repeat 1 124 0 2147 104 3 25 chr11 98191045 98191362 -52592191 + AluSx SINE Alu 3 312 0 182 291 76 13 chr11 98191579 98191658 -52591895 - L2 LINE L2 -21 3251 3168 388 181 32 0 chr11 98192585 98192679 -52590874 + (TTA)n Simple_repeat Simple_repeat 1 97 0 337 39 131 0 chr11 98192679 98192809 -52590744 + (TA)n Simple_repeat Simple_repeat 1 147 0 1793 245 67 26 chr11 98193011 98193429 -52590124 - L1ME LINE L1 -343 5823 5424 1686 183 7 3 chr11 98193429 98193724 -52589829 - AluJo SINE Alu -16 296 1 1793 245 67 26 chr11 98193724 98194324 -52589229 - L1ME LINE L1 -742 5424 4768 570 264 37 6 chr11 98194866 98195029 -52588524 - MER5A DNA MER1_type -21 168 1 1521 199 44 25 chr11 98195400 98195806 -52587747 + Charlie1b DNA MER1_type 58 471 -52 266 175 70 0 chr11 98195811 98195868 -52587685 - L1MB7 LINE L1 -12 6172 6112 4675 145 6 43 chr11 98195999 98196798 -52586755 - L1PA12 LINE L1 -6811 770 1 262 257 69 109 chr11 98197029 98197204 -52586349 + MIR SINE MIR 46 213 -49 248 240 141 49 chr11 98197509 98197752 -52585801 + L2 LINE L2 2686 3006 -307 707 172 8 16 chr11 98197917 98198045 -52585508 - LTR54 LTR ERV1 -383 127 1 263 342 61 86 chr11 98198115 98198559 -52584994 - L2 LINE L2 -1066 2248 1816 800 98 0 0 chr11 98198721 98198833 -52584720 + L1PA16 LINE L1 6046 6157 -9 428 238 84 141 chr11 98198852 98198978 -52584575 + L1ME1 LINE L1 5811 5920 -246 1405 226 27 0 chr11 98198978 98199270 -52584283 + AluJb SINE Alu 1 300 -2 428 238 84 141 chr11 98199270 98199370 -52584183 + L1ME1 LINE L1 5920 6024 -142 1868 80 0 0 chr11 98199392 98199642 -52583911 + L1PA5 LINE L1 5790 6039 -115 554 291 122 8 chr11 98200062 98200299 -52583254 + L2 LINE L2 1959 2222 -1092 993 298 16 22 chr11 98200300 98200619 -52582934 + MLT1J2 LTR MaLR 3 319 -131 283 247 52 146 chr11 98200753 98201040 -52582513 + L2 LINE L2 2238 2497 -817 349 159 0 16 chr11 98202087 98202150 -52581403 - AluS SINE Alu -239 64 3 198 197 155 0 chr11 98202526 98202597 -52580956 + MIR SINE MIR 127 208 -54 362 278 85 100 chr11 98202772 98203053 -52580500 + L2 LINE L2 3032 3308 -5 184 372 26 0 chr11 98203133 98203211 -52580342 - L2 LINE L2 -71 3201 3122 966 183 0 6 chr11 98203253 98203417 -52580136 - MLT1C LTR MaLR 0 467 305 299 43 0 22 chr11 98203931 98203977 -52579576 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 189 0 0 0 chr11 98204145 98204166 -52579387 + (TG)n Simple_repeat Simple_repeat 2 22 0 741 208 137 50 chr11 98204167 98204408 -52579145 - MER2 DNA MER2_type 0 345 84 363 296 21 43 chr11 98205374 98205560 -52577993 - L2 LINE L2 -25 3288 3107 2348 78 3 16 chr11 98206051 98206357 -52577196 + AluSc SINE Alu 1 302 -7 890 196 0 0 chr11 98206366 98206563 -52576990 + FRAM SINE Alu 1 195 0 333 257 14 36 chr11 98206594 98206734 -52576819 + (CAGAGA)n Simple_repeat Simple_repeat 2 138 0 478 131 16 0 chr11 98208160 98208258 -52575295 + L1MA1 LINE L1 5835 5938 -365 1651 115 7 4 chr11 98208262 98208531 -52575022 + L1MA2 LINE L1 5867 6136 -168 27 29 0 0 chr11 98208720 98208754 -52574799 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr11 98209432 98209460 -52574093 + AT_rich Low_complexity Low_complexity 1 28 0 261 242 16 0 chr11 98209667 98209729 -52573824 + MIR SINE MIR 199 261 -1 271 173 36 0 chr11 98210123 98210262 -52573291 + (TA)n Simple_repeat Simple_repeat 1 144 0 22 0 0 0 chr11 98210262 98210284 -52573269 + AT_rich Low_complexity Low_complexity 1 22 0 1877 112 14 4 chr11 98211254 98211530 -52572023 - L1PA11 LINE L1 -175 5999 5721 257 273 123 41 chr11 98211648 98211868 -52571685 - L1MCc LINE L1 -6063 360 123 420 257 204 22 chr11 98212176 98212538 -52571015 - L1MC4 LINE L1 -490 7552 7125 413 282 124 26 chr11 98212566 98212800 -52570753 - MLT1L LTR MaLR -145 470 214 296 296 45 0 chr11 98213728 98213816 -52569737 - L2 LINE L2 -34 3279 3188 24 0 0 0 chr11 98214015 98214039 -52569514 + AT_rich Low_complexity Low_complexity 1 24 0 266 88 0 0 chr11 98216023 98216057 -52567496 + U2 snRNA snRNA 1 34 -154 32 43 0 0 chr11 98216126 98216172 -52567381 + AT_rich Low_complexity Low_complexity 1 46 0 342 263 116 68 chr11 98216431 98216621 -52566932 - MER63 DNA MER1_type -1 1060 11 307 213 101 15 chr11 98217928 98218073 -52565480 - L1 LINE L1 -3686 2460 2310 2002 90 14 0 chr11 98218272 98218549 -52565004 - AluY SINE Alu -30 281 1 203 301 108 11 chr11 98218669 98218762 -52564791 + L2 LINE L2 2442 2543 -771 440 248 133 64 chr11 98218886 98219083 -52564470 + MLT2B2 LTR ERVL 190 402 -118 252 170 0 0 chr11 98219125 98219178 -52564375 + (CA)n Simple_repeat Simple_repeat 1 53 0 273 120 0 60 chr11 98219178 98219228 -52564325 + MLT2D LTR ERVL 367 413 -1 211 286 0 32 chr11 98220548 98220611 -52562942 + GA-rich Low_complexity Low_complexity 2 62 0 297 299 65 0 chr11 98221619 98221726 -52561827 + L1ME LINE L1 5531 5644 -520 1393 197 113 82 chr11 98222055 98222613 -52560940 - LTR48B LTR ERV1 -69 575 1 479 254 134 7 chr11 98223020 98223162 -52560391 - MIR SINE MIR -50 212 53 22 56 0 0 chr11 98224224 98224260 -52559293 + AT_rich Low_complexity Low_complexity 1 36 0 1249 227 32 113 chr11 98224409 98224619 -52558934 + LTR9 LTR ERV1 1 226 -386 2242 91 0 35 chr11 98224619 98224938 -52558615 + AluSp SINE Alu 1 308 -5 1249 227 32 113 chr11 98224938 98225251 -52558302 + LTR9 LTR ERV1 226 482 -130 23 86 0 0 chr11 98225585 98225643 -52557910 + AT_rich Low_complexity Low_complexity 1 58 0 381 365 33 69 chr11 98225805 98226109 -52557444 - L2 LINE L2 -30 3242 2950 1702 223 74 41 chr11 98226208 98226814 -52556739 + L1M4 LINE L1 2692 3317 -2829 266 277 15 0 chr11 98226823 98226888 -52556665 + L2 LINE L2 3204 3269 -3 688 296 140 49 chr11 98227310 98227803 -52555750 + LTR41 LTR ERVL 229 766 -7 24 32 0 0 chr11 98228177 98228208 -52555345 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr11 98229069 98229106 -52554447 + AT_rich Low_complexity Low_complexity 1 37 0 219 192 27 123 chr11 98229227 98229300 -52554253 - MIR SINE MIR -66 142 77 1614 185 0 17 chr11 98229588 98229886 -52553667 + AluJo SINE Alu 1 293 -19 31 26 0 0 chr11 98230147 98230185 -52553368 + AT_rich Low_complexity Low_complexity 1 38 0 311 267 62 11 chr11 98230208 98230384 -52553169 + L1ME4a LINE L1 5935 6119 -2 500 174 87 0 chr11 98230769 98230861 -52552692 + MER8 DNA MER2_type 23 122 -117 821 57 0 0 chr11 98230873 98230979 -52552574 - L1PA5 LINE L1 -1 6153 6048 1036 45 0 0 chr11 98230979 98231112 -52552441 + L1PA5 LINE L1 5919 6051 -103 803 190 0 0 chr11 98231898 98232040 -52551513 - FRAM SINE Alu -13 163 22 412 211 0 0 chr11 98232105 98232181 -52551372 - Tigger2 DNA MER2_type -2642 76 1 186 229 57 0 chr11 98232612 98232647 -52550906 - L2 LINE L2 -94 3219 3183 491 275 69 32 chr11 98232849 98233038 -52550515 - MIR SINE MIR -2 260 65 589 312 103 52 chr11 98233830 98234488 -52549065 - L1ME4a LINE L1 -52 6069 5378 22 35 0 0 chr11 98234549 98234578 -52548975 + AT_rich Low_complexity Low_complexity 1 29 0 416 116 63 63 chr11 98235540 98235635 -52547918 + L1PA8 LINE L1 6078 6172 0 480 139 0 0 chr11 98235690 98235769 -52547784 + (TA)n Simple_repeat Simple_repeat 2 80 0 22 0 0 0 chr11 98235974 98235996 -52547557 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 98236742 98236764 -52546789 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 98237162 98237186 -52546367 + AT_rich Low_complexity Low_complexity 1 24 0 375 325 33 20 chr11 98237205 98237356 -52546197 + MIR SINE MIR 14 166 -96 267 208 69 14 chr11 98237389 98237461 -52546092 + HAL1 LINE L1 630 705 -1802 477 225 72 7 chr11 98237470 98237608 -52545945 + MER31B LTR ERV1 320 466 0 396 275 54 77 chr11 98237608 98237830 -52545723 + HAL1 LINE L1 2291 2507 0 2384 122 19 8 chr11 98237905 98238265 -52545288 + THE1B LTR MaLR 1 364 0 191 388 124 16 chr11 98238391 98238520 -52545033 - L2 LINE L2 -830 2484 2342 1246 161 0 64 chr11 98239405 98239437 -52544116 + MER46A DNA MER2_type 3 35 -2696 387 108 0 0 chr11 98239437 98239502 -52544051 + L1MA2 LINE L1 6239 6303 -1 1246 161 0 64 chr11 98239502 98239718 -52543835 + MER46A DNA MER2_type 35 235 -1 16503 196 28 57 chr11 98240523 98241923 -52541630 - L1PA12 LINE L1 -1352 6232 4792 936 163 58 0 chr11 98241923 98242095 -52541458 - AluY SINE Alu 0 311 130 16503 196 28 57 chr11 98242095 98242451 -52541102 - L1PA12 LINE L1 -2792 4792 4427 2307 94 0 0 chr11 98242451 98242749 -52540804 - AluY SINE Alu -13 298 1 16503 196 28 57 chr11 98242749 98244792 -52538761 - L1PA12 LINE L1 -3157 4427 1595 258 32 0 0 chr11 98244792 98244823 -52538730 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 16503 196 28 57 chr11 98244823 98245180 -52538373 - L1PA12 LINE L1 -5989 1595 1229 822 252 13 43 chr11 98245311 98245541 -52538012 + MIR SINE MIR 1 223 -39 567 269 0 8 chr11 98245944 98246109 -52537444 + FLAM_A SINE Alu 1 133 0 230 81 27 0 chr11 98246178 98246215 -52537338 + (TA)n Simple_repeat Simple_repeat 2 39 0 747 280 53 0 chr11 98246254 98246497 -52537056 - MIR SINE MIR 0 262 7 1435 222 13 0 chr11 98246586 98246892 -52536661 + AluJb SINE Alu 1 310 -2 279 202 0 0 chr11 98246907 98246991 -52536562 + A-rich Low_complexity Low_complexity 1 84 0 192 377 57 0 chr11 98247267 98247373 -52536180 - L2 LINE L2 -229 3043 2932 1106 113 0 0 chr11 98247669 98247820 -52535733 - AluSx SINE Alu -157 155 5 362 84 72 12 chr11 98247987 98248070 -52535483 + A-rich Low_complexity Low_complexity 3 90 0 1768 172 0 0 chr11 98249392 98249671 -52533882 + AluSx SINE Alu 1 279 -33 23 0 0 0 chr11 98250213 98250236 -52533317 + AT_rich Low_complexity Low_complexity 1 23 0 383 348 33 43 chr11 98250884 98251094 -52532459 + MIR SINE MIR 16 223 -39 377 304 26 31 chr11 98251463 98251647 -52531906 + MIR SINE MIR 30 206 -56 21 95 0 0 chr11 98252217 98252280 -52531273 + AT_rich Low_complexity Low_complexity 1 63 0 246 218 0 0 chr11 98252334 98252389 -52531164 - MIR SINE MIR -102 160 106 256 293 66 9 chr11 98253117 98253223 -52530330 + L2 LINE L2 3139 3250 -22 2187 269 38 26 chr11 98253796 98254594 -52528959 - L1MB7 LINE L1 -10 6174 5368 357 342 13 18 chr11 98254629 98254857 -52528696 + L1 LINE L1 2147 2373 -3773 247 203 25 0 chr11 98255051 98255130 -52528423 + (TA)n Simple_repeat Simple_repeat 1 81 0 333 295 0 0 chr11 98255314 98255392 -52528161 - L1MCc LINE L1 -5523 900 823 445 295 30 34 chr11 98255731 98255968 -52527585 - L1ME3A LINE L1 -275 5895 5660 707 175 0 0 chr11 98255968 98256082 -52527471 + FLAM_C SINE Alu 21 134 -9 540 258 109 27 chr11 98256085 98256341 -52527212 - L1ME3A LINE L1 -502 5660 5384 2017 129 7 13 chr11 98256432 98256734 -52526819 + AluSx SINE Alu 1 300 -12 21 89 0 0 chr11 98257875 98257931 -52525622 + AT_rich Low_complexity Low_complexity 1 56 0 33 73 0 0 chr11 98258036 98258104 -52525449 + AT_rich Low_complexity Low_complexity 1 68 0 261 0 0 0 chr11 98260319 98260348 -52523205 + (TG)n Simple_repeat Simple_repeat 2 30 0 225 291 23 0 chr11 98260348 98260434 -52523119 + L1MC4 LINE L1 6616 6703 -1339 1779 135 68 0 chr11 98261126 98261407 -52522146 - MER1B DNA MER1_type 0 339 40 264 264 0 0 chr11 98261412 98261484 -52522069 - L1ME3A LINE L1 -1228 4918 4847 * 692 188 7 39 chr11 98261483 98261637 -52521916 - L1PA15-16 LINE L1 -5245 1604 1456 * 1568 171 44 4 chr11 98261636 98261910 -52521643 - L1PA15-16 LINE L1 -5330 1519 1235 307 93 0 0 chr11 98262842 98262885 -52520668 - MLT2F LTR ERVL 0 663 621 2514 163 23 0 chr11 98263021 98263457 -52520096 + L1PA16 LINE L1 5613 6058 -108 332 281 164 58 chr11 98263473 98263832 -52519721 + L1M2 LINE L1 779 1175 -5674 815 121 28 14 chr11 98268058 98268199 -52515354 + L1PA16 LINE L1 6021 6163 -3 1714 158 0 0 chr11 98268482 98268747 -52514806 + AluSx SINE Alu 40 304 -8 593 121 35 69 chr11 98268858 98268974 -52514579 + L1MA6 LINE L1 6180 6291 -9 4353 293 129 17 chr11 98269954 98272244 -52511309 + L2 LINE L2 764 3305 -8 28 0 0 0 chr11 98272442 98272470 -52511083 + AT_rich Low_complexity Low_complexity 1 28 0 277 222 16 0 chr11 98272707 98272770 -52510783 + L2 LINE L2 3242 3305 -8 553 224 75 70 chr11 98273176 98273377 -52510176 + MIR3 SINE MIR 2 203 -5 263 184 26 0 chr11 98274835 98274911 -52508642 + GA-rich Low_complexity Low_complexity 1 78 0 252 304 0 52 chr11 98275431 98275546 -52508007 + MIR SINE MIR 33 141 -121 240 314 127 48 chr11 98275714 98275905 -52507648 + MIR SINE MIR 16 211 -51 193 349 23 12 chr11 98276484 98276570 -52506983 - MIR SINE MIR -55 153 67 234 272 18 26 chr11 98276634 98276748 -52506805 + T-rich Low_complexity Low_complexity 5 117 0 275 343 44 7 chr11 98276852 98276989 -52506564 - MIR SINE MIR -107 155 14 369 354 68 7 chr11 98277688 98277835 -52505718 - MIR3 SINE MIR -6 202 47 200 109 0 65 chr11 98279175 98279221 -52504332 + (TATAA)n Simple_repeat Simple_repeat 5 47 0 198 325 51 43 chr11 98279551 98279668 -52503885 - MIR SINE MIR -125 137 20 2285 211 49 59 chr11 98279929 98280493 -52503060 + MLT1E2 LTR MaLR 1 560 -66 2184 114 0 7 chr11 98280493 98280791 -52502762 - AluSq SINE Alu -17 296 1 2285 211 49 59 chr11 98280791 98280856 -52502697 + MLT1E2 LTR MaLR 560 624 -2 754 164 0 40 chr11 98280864 98281016 -52502537 - L1 LINE L1 -2328 3818 3673 1501 193 39 30 chr11 98281018 98281350 -52502203 + L1 LINE L1 3960 4294 -1852 1248 263 41 3 chr11 98281642 98281980 -52501573 + LTR16A LTR ERVL 97 447 -3 213 39 0 0 chr11 98282450 98282476 -52501077 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 939 154 0 34 chr11 98282478 98282627 -52500926 - FRAM SINE Alu -30 146 3 635 73 21 10 chr11 98283532 98283628 -52499925 + MER9 LTR ERVK 412 508 -3 1866 164 3 10 chr11 98283869 98284181 -52499372 - AluJb SINE Alu -2 310 1 288 0 0 0 chr11 98284905 98284937 -52498616 + (CA)n Simple_repeat Simple_repeat 2 33 0 252 296 14 0 chr11 98284946 98285017 -52498536 - L2 LINE L2 -1379 1935 1864 1652 168 7 7 chr11 98285101 98285392 -52498161 - MER47A DNA MER2_type -74 292 2 34 0 0 0 chr11 98285566 98285600 -52497953 + AT_rich Low_complexity Low_complexity 1 34 0 370 241 35 18 chr11 98285682 98285852 -52497701 + L1ME3A LINE L1 5255 5427 -737 1494 266 61 40 chr11 98285854 98286191 -52497362 + L1ME3A LINE L1 5499 5827 -343 721 265 66 0 chr11 98286191 98286387 -52497166 - MER63A DNA MER1_type 0 210 2 1494 266 61 40 chr11 98286387 98286702 -52496851 + L1ME3A LINE L1 5827 6165 -5 2063 103 14 3 chr11 98286912 98287202 -52496351 + AluSc SINE Alu 1 293 -16 28 0 0 0 chr11 98287235 98287263 -52496290 + AT_rich Low_complexity Low_complexity 1 28 0 320 282 68 17 chr11 98287524 98287641 -52495912 - L1ME2 LINE L1 -2 6162 6040 943 229 14 9 chr11 98287760 98287978 -52495575 + AluJo SINE Alu 1 219 -93 198 0 0 0 chr11 98287998 98288020 -52495533 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 24 0 0 0 chr11 98288090 98288114 -52495439 + AT_rich Low_complexity Low_complexity 1 24 0 696 269 28 59 chr11 98288310 98288634 -52494919 - MER83C LTR ERV1 -11 362 49 255 241 0 0 chr11 98288700 98288758 -52494795 + MIR SINE MIR 97 154 -108 348 271 24 0 chr11 98288830 98288915 -52494638 + MIR SINE MIR 174 260 -2 239 310 17 17 chr11 98288907 98288965 -52494588 + L2 LINE L2 3114 3171 -101 * 248 290 72 65 chr11 98289177 98289315 -52494238 - MIR3 SINE MIR -61 147 9 443 328 69 6 chr11 98289395 98289569 -52493984 + MIR SINE MIR 78 262 0 181 336 195 0 chr11 98289743 98289856 -52493697 + L2 LINE L2 2778 2912 -402 300 238 12 12 chr11 98290226 98290310 -52493243 + CT-rich Low_complexity Low_complexity 3 86 0 348 316 133 6 chr11 98290567 98290725 -52492828 + MIR SINE MIR 49 226 -36 197 317 0 0 chr11 98291136 98291196 -52492357 + L2 LINE L2 3008 3067 -246 200 298 123 18 chr11 98291379 98291493 -52492060 + L2 LINE L2 2713 2838 -476 24 85 0 0 chr11 98291668 98291727 -52491826 + AT_rich Low_complexity Low_complexity 1 59 0 1186 207 159 3 chr11 98292431 98292721 -52490832 - MER58B DNA MER1_type 0 341 7 417 270 102 15 chr11 98292740 98292877 -52490676 + MIR SINE MIR 5 153 -109 2288 119 3 0 chr11 98293076 98293388 -52490165 - AluSp SINE Alu 0 313 1 228 323 0 0 chr11 98293541 98293606 -52489947 + (CA)n Simple_repeat Simple_repeat 2 66 0 345 274 21 11 chr11 98293647 98293742 -52489811 - MER69 DNA AcHobo -1130 96 1 1425 233 152 47 chr11 98293860 98294516 -52489037 - MER50 LTR ERV1 0 734 10 462 18 0 0 chr11 98295400 98295455 -52488098 + (TTA)n Simple_repeat Simple_repeat 1 55 0 603 171 211 0 chr11 98295455 98295578 -52487975 - FRAM SINE Alu -32 144 1 996 175 240 24 chr11 98295705 98295951 -52487602 + AluJo SINE Alu 4 302 0 21 82 0 0 chr11 98296023 98296072 -52487481 + AT_rich Low_complexity Low_complexity 1 49 0 34 55 0 0 chr11 98296781 98296836 -52486717 + AT_rich Low_complexity Low_complexity 1 55 0 24 0 0 0 chr11 98298090 98298114 -52485439 + AT_rich Low_complexity Low_complexity 1 24 0 2102 129 0 3 chr11 98298409 98298718 -52484835 - AluSx SINE Alu -4 308 1 680 206 15 0 chr11 98299433 98299564 -52483989 + FLAM_A SINE Alu 1 133 0 2190 60 0 4 chr11 98299836 98300117 -52483436 - AluYa5 SINE Alu -1 310 31 433 244 241 17 chr11 98300427 98300718 -52482835 - HAL1 LINE L1 -84 2423 2068 447 298 170 14 chr11 98301400 98301987 -52481566 - L1MEd LINE L1 -1994 4135 3457 2060 122 7 0 chr11 98302135 98302429 -52481124 - AluSg SINE Alu -14 296 1 1267 295 37 26 chr11 98302447 98303334 -52480219 - L1MEd LINE L1 -2705 3424 2528 25 0 0 0 chr11 98303527 98303552 -52480001 + AT_rich Low_complexity Low_complexity 1 25 0 264 317 113 14 chr11 98303900 98304042 -52479511 - L1MEd LINE L1 -5455 664 509 1754 113 35 0 chr11 98304162 98304418 -52479135 - AluSg SINE Alu -45 265 1 24 32 0 0 chr11 98304747 98304778 -52478775 + AT_rich Low_complexity Low_complexity 1 31 0 709 269 39 17 chr11 98305681 98305915 -52477638 - L1ME2 LINE L1 -1 6163 5925 1686 136 0 8 chr11 98306340 98306605 -52476948 + AluSx SINE Alu 49 311 -1 1845 66 0 4 chr11 98306980 98307222 -52476331 + AluY SINE Alu 1 241 -70 27 62 0 0 chr11 98307366 98307414 -52476139 + AT_rich Low_complexity Low_complexity 1 48 0 381 86 0 0 chr11 98307414 98307472 -52476081 + AluY SINE Alu 244 301 0 570 235 133 0 chr11 98307591 98307757 -52475796 - MER5A DNA MER1_type -1 188 1 320 217 29 0 chr11 98308570 98308639 -52474914 + Tigger5 DNA MER2_type 9 79 -2244 437 197 0 0 chr11 98308641 98308717 -52474836 - Tigger5 DNA MER2_type -6 2317 2242 278 281 12 12 chr11 98308707 98308789 -52474764 + Tigger5 DNA MER2_type 2242 2323 0 * 729 285 113 8 chr11 98309030 98309286 -52474267 + Charlie2 DNA MER1_type 36 318 -2464 1347 220 105 58 chr11 98309295 98309767 -52473786 + Charlie2 DNA MER1_type 1856 2365 -497 2167 114 3 0 chr11 98309767 98310064 -52473489 - AluSx SINE Alu -14 298 1 1347 220 105 58 chr11 98310064 98310200 -52473353 + Charlie2 DNA MER1_type 2365 2493 -369 1270 296 51 10 chr11 98310211 98310623 -52472930 - LTR16A LTR ERVL -21 429 1 1188 181 79 20 chr11 98310623 98310971 -52472582 + Charlie2 DNA MER1_type 2494 2862 0 553 293 15 67 chr11 98312791 98313061 -52470492 - MER46C DNA MER2_type -12 326 71 421 206 118 22 chr11 98313265 98313401 -52470152 - MIR SINE MIR -86 176 28 2173 252 54 28 chr11 98314277 98314967 -52468586 - L1ME2 LINE L1 -10 6154 5447 1052 311 68 14 chr11 98315334 98315774 -52467779 + LTR16B LTR ERVL 1 464 0 2390 89 0 0 chr11 98315945 98316248 -52467305 - AluSx SINE Alu -9 303 1 377 239 52 52 chr11 98316646 98316876 -52466677 + L1ME4a LINE L1 5707 5936 -185 2211 89 0 17 chr11 98316884 98317186 -52466367 + AluSc SINE Alu 1 297 -12 2865 180 12 7 chr11 98317932 98318741 -52464812 + L1M1 LINE L1 4949 5763 -537 608 214 0 0 chr11 98318757 98318869 -52464684 + FLAM_C SINE Alu 11 122 -21 409 199 19 5 chr11 98318884 98318986 -52464567 + AluJ/FRAM SINE Alu 222 290 -12 374 135 3 16 chr11 98318986 98319067 -52464486 + L1MA1 LINE L1 5794 5874 -294 264 30 0 0 chr11 98319325 98319358 -52464195 + (TG)n Simple_repeat Simple_repeat 2 34 0 2075 119 9 17 chr11 98319750 98320095 -52463458 + L1MA1 LINE L1 5961 6302 0 243 227 227 0 chr11 98320301 98320411 -52463142 + HAL1 LINE L1 2244 2378 -129 617 311 4 29 chr11 98320923 98321167 -52462386 + L2 LINE L2 3076 3313 0 24 53 0 0 chr11 98321178 98321216 -52462337 + AT_rich Low_complexity Low_complexity 1 38 0 3311 122 9 62 chr11 98321480 98322047 -52461506 + LTR8 LTR ERV1 155 691 0 297 358 59 18 chr11 98322334 98322555 -52460998 - L2 LINE L2 -349 2965 2736 894 129 0 0 chr11 98324395 98324519 -52459034 + AluSg/x SINE Alu 167 290 -22 183 42 0 0 chr11 98324522 98324546 -52459007 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1580 147 156 9 chr11 98324548 98324894 -52458659 - MSTB LTR MaLR -29 397 1 884 304 58 40 chr11 98324967 98325694 -52457859 + L1ME3 LINE L1 5255 5994 -168 341 161 0 0 chr11 98326326 98326388 -52457165 + L1PB4 LINE L1 6093 6154 -2 259 262 36 12 chr11 98327326 98327410 -52456143 + L1MC4a LINE L1 6712 6797 -1011 701 186 16 0 chr11 98329673 98329805 -52453748 - L1MA9 LINE L1 -261 6039 5889 27 0 0 0 chr11 98329844 98329871 -52453682 + AT_rich Low_complexity Low_complexity 1 27 0 1996 160 0 3 chr11 98329877 98330215 -52453338 - L1MA9 LINE L1 -408 5904 5568 578 90 11 11 chr11 98330213 98330302 -52453251 + L1MA9 LINE L1 5464 5552 -760 * 309 144 51 0 chr11 98330468 98330586 -52452967 + (TA)n Simple_repeat Simple_repeat 1 124 0 430 217 12 30 chr11 98331124 98331290 -52452263 + (TAA)n Simple_repeat Simple_repeat 2 164 0 21 71 0 0 chr11 98331333 98331375 -52452178 + AT_rich Low_complexity Low_complexity 1 42 0 694 169 8 16 chr11 98331375 98331499 -52452054 + SATR1 Satellite Satellite 188 310 -160 1697 134 18 0 chr11 98331625 98331902 -52451651 - L1PA16 LINE L1 -341 5825 5544 348 94 0 0 chr11 98332344 98332397 -52451156 + (CA)n Simple_repeat Simple_repeat 2 54 0 1071 242 245 21 chr11 98332558 98333282 -52450271 - SATR1 Satellite Satellite -1 886 1 1071 215 309 3 chr11 98333306 98333659 -52449894 - SATR1 Satellite Satellite -2 468 8 952 202 291 20 chr11 98333685 98334283 -52449270 - SATR1 Satellite Satellite -4 760 1 440 247 132 58 chr11 98334332 98334522 -52449031 - SATR1 Satellite Satellite -52 418 215 2387 184 151 30 chr11 98334587 98337331 -52446222 - SATR1 Satellite Satellite -1 3075 1 2060 185 100 5 chr11 98337357 98338035 -52445518 - SATR1 Satellite Satellite -1 742 1 460 150 37 12 chr11 98338177 98338431 -52445122 + (TA)n Simple_repeat Simple_repeat 1 260 0 351 0 0 0 chr11 98341041 98341080 -52442473 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 207 0 0 0 chr11 98341079 98341102 -52442451 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 * 216 67 0 0 chr11 98342936 98342966 -52440587 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 317 380 23 18 chr11 98344549 98344720 -52438833 + L2 LINE L2 2794 2965 -349 504 122 0 0 chr11 98344724 98344806 -52438747 + (CA)n Simple_repeat Simple_repeat 2 83 0 249 319 15 87 chr11 98344841 98345107 -52438446 + L2 LINE L2 2994 3240 -73 252 86 0 0 chr11 98345731 98345766 -52437787 + (T)n Simple_repeat Simple_repeat 1 35 0 604 112 0 0 chr11 98347113 98347202 -52436351 + L1PA8 LINE L1 6075 6163 -9 1055 216 21 21 chr11 98347447 98347688 -52435865 + MLT2B3 LTR ERVL 1 241 -313 542 299 0 0 chr11 98347684 98347818 -52435735 + MLT2B3 LTR ERVL 375 508 -46 * 1683 167 31 16 chr11 98347825 98347877 -52435676 - MER7A DNA MER2_type -2693 345 295 1877 149 0 26 chr11 98347877 98348186 -52435367 - AluSx SINE Alu -11 301 1 1683 167 31 16 chr11 98348186 98348451 -52435102 - MER7A DNA MER2_type -2743 295 25 294 189 40 14 chr11 98348455 98348529 -52435024 + MLT2B1 LTR ERVL 445 520 0 190 227 0 23 chr11 98348614 98348658 -52434895 - L3b LINE CR1 -11 1572 1530 234 267 23 12 chr11 98348928 98349014 -52434539 + (CATA)n Simple_repeat Simple_repeat 2 88 0 1304 205 0 23 chr11 98349729 98349988 -52433565 - AluJo SINE Alu -59 253 1 364 260 64 40 chr11 98350745 98350918 -52432635 - MLT1E3 LTR MaLR -402 222 46 997 174 0 5 chr11 98350923 98351124 -52432429 - L1 LINE L1 -1188 4958 4759 187 239 137 60 chr11 98351427 98351544 -52432009 - L2 LINE L2 -476 2838 2713 699 168 0 17 chr11 98352033 98352152 -52431401 + FRAM SINE Alu 38 154 -22 183 259 89 54 chr11 98353851 98353963 -52429590 + L2 LINE L2 366 481 -2833 833 231 25 5 chr11 98356414 98356617 -52426936 + L1PA16 LINE L1 5833 6039 -127 360 268 201 63 chr11 98356619 98357048 -52426505 + L1M2 LINE L1 598 1085 -5764 345 148 49 0 chr11 98359294 98359355 -52424198 + L1PA16 LINE L1 6021 6084 -82 1240 195 15 19 chr11 98359507 98359798 -52423755 - AluJb SINE Alu 0 313 24 251 157 20 0 chr11 98359878 98359929 -52423624 + (TA)n Simple_repeat Simple_repeat 2 53 0 536 268 27 68 chr11 98360519 98360814 -52422739 - L1M4b LINE L1 -5924 935 653 429 152 0 15 chr11 98361102 98361168 -52422385 + AluJ/FLAM SINE Alu 2 66 -246 1593 183 10 16 chr11 98361442 98361753 -52421800 + AluJb SINE Alu 1 309 -3 1599 178 6 48 chr11 98362151 98362505 -52421048 - MER2 DNA MER2_type 0 345 7 247 426 59 25 chr11 98363015 98363339 -52420214 - L2 LINE L2 0 3272 2938 213 39 0 0 chr11 98363637 98363663 -52419890 + (CAAAG)n Simple_repeat Simple_repeat 5 30 0 755 147 16 23 chr11 98366326 98366455 -52417098 + AluSq/x SINE Alu 2 129 -184 183 80 0 0 chr11 98366835 98366860 -52416693 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 305 237 0 0 chr11 98367281 98367340 -52416213 - MER8 DNA MER2_type -158 81 23 1433 208 3 20 chr11 98368206 98368509 -52415044 - AluJo SINE Alu -14 298 1 219 192 26 115 chr11 98368789 98368867 -52414686 + MIR SINE MIR 72 142 -66 1937 136 0 23 chr11 98369060 98369370 -52414183 - AluSg SINE Alu -7 303 1 25 31 0 0 chr11 98369903 98369935 -52413618 + AT_rich Low_complexity Low_complexity 1 32 0 29 0 0 0 chr11 98370242 98370271 -52413282 + AT_rich Low_complexity Low_complexity 1 29 0 294 95 0 0 chr11 98370595 98370637 -52412916 + (TAGA)n Simple_repeat Simple_repeat 2 43 0 624 296 132 23 chr11 98370876 98371355 -52412198 - LTR41 LTR ERVL -242 531 1 232 337 30 0 chr11 98371484 98371585 -52411968 - L1ME LINE L1 -536 5634 5531 1479 196 25 0 chr11 98371900 98372176 -52411377 - AluJb SINE Alu -29 283 1 214 264 0 38 chr11 98372236 98372289 -52411264 + L2 LINE L2 2997 3047 -225 395 32 0 65 chr11 98372368 98372430 -52411123 - L1PA8 LINE L1 -6 6166 6109 853 298 13 4 chr11 98372831 98373069 -52410484 + MIR SINE MIR 20 259 -3 2158 113 0 0 chr11 98373857 98374148 -52409405 + AluSx SINE Alu 1 291 -21 21 82 0 0 chr11 98374153 98374202 -52409351 + AT_rich Low_complexity Low_complexity 1 49 0 2320 75 7 0 chr11 98374581 98374886 -52408667 + AluY SINE Alu 1 307 -4 1894 158 3 19 chr11 98375706 98376023 -52407530 + AluSx SINE Alu 1 312 0 1070 248 30 21 chr11 98376795 98376887 -52406666 - MER2 DNA MER2_type -10 335 245 2267 88 3 0 chr11 98376887 98377182 -52406371 - AluY SINE Alu -15 296 1 1070 248 30 21 chr11 98377182 98377420 -52406133 - MER2 DNA MER2_type -100 245 2 25 0 0 0 chr11 98383150 98383175 -52400378 + AT_rich Low_complexity Low_complexity 1 25 0 487 264 99 16 chr11 98383212 98383528 -52400025 - L1MB7 LINE L1 0 6178 5841 180 433 50 0 chr11 98383804 98383924 -52399629 + L2 LINE L2 3147 3272 0 850 271 80 11 chr11 98385874 98386251 -52397302 + L1MA9 LINE L1 5872 6274 -38 1454 212 10 14 chr11 98386407 98386695 -52396858 + AluJo SINE Alu 1 287 -25 745 175 8 0 chr11 98387265 98387391 -52396162 + AluSq/x SINE Alu 24 150 -162 21 82 0 0 chr11 98387711 98387760 -52395793 + AT_rich Low_complexity Low_complexity 1 49 0 481 277 14 0 chr11 98388589 98388730 -52394823 - MER5A DNA MER1_type -40 149 7 360 148 0 0 chr11 98389305 98389366 -52394187 + (CA)n Simple_repeat Simple_repeat 2 62 0 465 292 61 59 chr11 98389958 98390349 -52393204 - L1M4b LINE L1 -5923 936 545 307 261 0 0 chr11 98390542 98390607 -52392946 + FRAM/FAM SINE Alu 1 65 -110 184 284 23 23 chr11 98390617 98390705 -52392848 + MIR SINE MIR 175 262 0 1565 194 9 34 chr11 98390881 98391201 -52392352 + AluJb SINE Alu 1 312 0 1660 169 9 37 chr11 98391597 98391946 -52391607 - MER2 DNA MER2_type 0 345 7 262 416 65 25 chr11 98392453 98392775 -52390778 - L2 LINE L2 0 3272 2938 23 0 0 0 chr11 98393387 98393410 -52390143 + AT_rich Low_complexity Low_complexity 1 23 0 314 242 40 13 chr11 98394316 98394465 -52389088 + (TA)n Simple_repeat Simple_repeat 2 154 0 1591 176 3 3 chr11 98394492 98394776 -52388777 - AluSx SINE Alu -22 290 7 255 133 0 0 chr11 98396296 98396341 -52387212 + (CA)n Simple_repeat Simple_repeat 2 46 0 22 35 0 0 chr11 98396452 98396481 -52387072 + AT_rich Low_complexity Low_complexity 1 29 0 2088 154 0 0 chr11 98396661 98396967 -52386586 - AluSx SINE Alu -6 306 1 25182 32 15 2 chr11 98397172 98403207 -52380346 + L1PA2 LINE L1 2 6155 0 2186 73 42 7 chr11 98403525 98403813 -52379740 + AluY SINE Alu 1 298 -13 909 238 87 33 chr11 98403909 98404241 -52379312 + MLT2B1 LTR ERVL 113 462 -58 236 200 0 0 chr11 98404288 98404338 -52379215 + MLT2B1 LTR ERVL 505 554 0 26 111 0 0 chr11 98404343 98404460 -52379093 + AT_rich Low_complexity Low_complexity 1 117 0 209 222 0 0 chr11 98405706 98405751 -52377802 + A-rich Low_complexity Low_complexity 1 45 0 2124 127 0 16 chr11 98407658 98407973 -52375580 - AluSq SINE Alu -1 312 3 26 50 0 0 chr11 98408703 98408743 -52374810 + AT_rich Low_complexity Low_complexity 1 40 0 22 56 0 0 chr11 98408784 98408820 -52374733 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr11 98409110 98409137 -52374416 + AT_rich Low_complexity Low_complexity 1 27 0 1094 248 73 60 chr11 98409356 98409807 -52373746 + MLT1C LTR MaLR 9 465 -2 671 174 22 58 chr11 98409908 98410046 -52373507 + FLAM_C SINE Alu 1 133 0 1004 119 11 0 chr11 98410055 98410231 -52373322 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1568 166 35 38 chr11 98410256 98410546 -52373007 + AluJb SINE Alu 1 289 -23 2203 99 3 0 chr11 98410782 98411097 -52372456 + AluSc SINE Alu 1 316 0 28 61 0 0 chr11 98411132 98411181 -52372372 + AT_rich Low_complexity Low_complexity 1 49 0 428 182 0 20 chr11 98412291 98412390 -52371163 - L1MA6 LINE L1 0 6300 6204 35 83 0 0 chr11 98412513 98412597 -52370956 + AT_rich Low_complexity Low_complexity 1 84 0 283 304 0 0 chr11 98412859 98412928 -52370625 + MER5A DNA MER1_type 115 183 -6 1284 203 9 89 chr11 98413052 98413256 -52370297 - AluJo SINE Alu -12 300 130 2084 133 0 31 chr11 98413256 98413578 -52369975 + AluSx SINE Alu 1 312 0 1284 203 9 89 chr11 98413578 98413699 -52369854 - AluJo SINE Alu -182 130 1 1823 116 80 0 chr11 98414799 98415074 -52368479 - AluSx SINE Alu -15 297 1 2250 112 10 0 chr11 98415441 98415745 -52367808 - AluSg SINE Alu -2 308 2 1749 149 0 15 chr11 98415751 98416019 -52367534 - AluSx SINE Alu -10 302 39 426 216 0 11 chr11 98417233 98417321 -52366232 + AluS SINE Alu 1 87 -225 713 220 0 0 chr11 98417334 98417475 -52366078 + FLAM_C SINE Alu 3 143 0 992 136 0 0 chr11 98418565 98418712 -52364841 - AluSc SINE Alu -8 301 155 567 269 27 0 chr11 98418892 98419041 -52364512 + Tigger3(Golem) DNA MER2_type 2886 3038 0 208 232 18 0 chr11 98421576 98421632 -52361921 + (CA)n Simple_repeat Simple_repeat 2 58 0 1811 144 11 7 chr11 98421810 98422122 -52361431 + AluSx SINE Alu 5 317 0 204 305 20 117 chr11 98423387 98423487 -52360066 + L2 LINE L2 2977 3050 -263 2312 76 0 35 chr11 98423487 98423802 -52359751 + AluY SINE Alu 1 304 -7 204 305 20 117 chr11 98423802 98423898 -52359655 + L2 LINE L2 3050 3154 -159 1159 241 35 11 chr11 98423901 98424187 -52359366 - AluJb SINE Alu -14 298 6 190 368 58 11 chr11 98424252 98424339 -52359214 + L2 LINE L2 3201 3291 -22 1930 171 36 67 chr11 98424896 98425341 -52358212 + Tigger2a DNA MER2_type 3 433 -1 1680 131 0 0 chr11 98425889 98426125 -52357428 + AluSx SINE Alu 56 291 -21 39 38 0 0 chr11 98426126 98426179 -52357374 + AT_rich Low_complexity Low_complexity 1 53 0 1992 139 3 0 chr11 98426582 98426876 -52356677 + AluSx SINE Alu 1 295 -17 1997 142 0 3 chr11 98426925 98427227 -52356326 - AluSg SINE Alu -9 301 1 1783 166 6 13 chr11 98428020 98428333 -52355220 + AluSx SINE Alu 1 311 -1 21 57 0 0 chr11 98428637 98428672 -52354881 + AT_rich Low_complexity Low_complexity 1 35 0 967 226 54 48 chr11 98429101 98429192 -52354361 - MER2 DNA MER2_type -10 335 246 2040 142 0 0 chr11 98429192 98429481 -52354072 - AluY SINE Alu -22 289 1 967 226 54 48 chr11 98429481 98429721 -52353832 - MER2 DNA MER2_type -99 246 2 21 36 0 0 chr11 98432599 98432627 -52350926 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr11 98435458 98435490 -52348063 + AT_rich Low_complexity Low_complexity 1 32 0 487 265 102 22 chr11 98435524 98435837 -52347716 - L1MB7 LINE L1 0 6178 5841 191 442 50 0 chr11 98436113 98436233 -52347320 + L2 LINE L2 3147 3272 0 2549 46 0 7 chr11 98436643 98436948 -52346605 + AluY SINE Alu 1 303 -8 603 180 0 36 chr11 98438349 98438460 -52345093 + AluSg/x SINE Alu 177 283 -29 213 39 0 0 chr11 98438463 98438489 -52345064 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 462 266 8 0 chr11 98439738 98439866 -52343687 - MER5A DNA MER1_type -55 134 6 1907 96 54 11 chr11 98441448 98441728 -52341825 + AluSp SINE Alu 1 292 -21 39424 64 5 1 chr11 98443130 98449245 -52334308 + L1PA5 LINE L1 11 6150 -4 22 35 0 0 chr11 98449505 98449534 -52334019 + AT_rich Low_complexity Low_complexity 1 29 0 1193 219 17 14 chr11 98449589 98449881 -52333672 - AluJo SINE Alu -7 295 3 362 259 88 6 chr11 98450066 98450236 -52333317 - L1ME3A LINE L1 -304 5866 5683 323 304 94 30 chr11 98450291 98450695 -52332858 - L1ME3A LINE L1 -570 5594 5162 2395 58 0 0 chr11 98453807 98454102 -52329451 + AluY SINE Alu 1 295 -16 305 378 88 0 chr11 98455704 98455897 -52327656 + L2 LINE L2 2756 2965 -349 399 173 0 0 chr11 98455903 98455984 -52327569 + (CATA)n Simple_repeat Simple_repeat 2 82 0 306 360 30 63 chr11 98456020 98456351 -52327202 + L2 LINE L2 2994 3313 0 434 110 33 55 chr11 98458286 98458377 -52325176 + L1PA10 LINE L1 6077 6165 -3 987 230 21 21 chr11 98458613 98458852 -52324701 + MLT2B3 LTR ERVL 1 239 -315 507 299 0 42 chr11 98458839 98458983 -52324570 + MLT2B3 LTR ERVL 370 507 -47 * 1637 158 37 28 chr11 98458991 98459042 -52324511 - MER7A DNA MER2_type -2693 345 296 1872 156 3 10 chr11 98459042 98459356 -52324197 - AluSx SINE Alu 0 312 1 1637 158 37 28 chr11 98459356 98459627 -52323926 - MER7A DNA MER2_type -2742 296 22 297 106 99 4 chr11 98459628 98459698 -52323855 + MLT2B1 LTR ERVL 440 520 0 202 229 29 29 chr11 98460134 98460204 -52323349 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 1086 238 67 25 chr11 98460889 98461171 -52322382 - AluJo SINE Alu -7 295 2 364 265 29 10 chr11 98461401 98461503 -52322050 + MER82 DNA MER2_type 549 652 -1 21 0 0 0 chr11 98461543 98461564 -52321989 + AT_rich Low_complexity Low_complexity 1 21 0 327 171 8 120 chr11 98461680 98461797 -52321756 - MLT2F LTR ERVL -4 659 556 381 281 78 13 chr11 98461956 98462109 -52321444 - MLT1E3 LTR MaLR -416 208 46 24 0 0 0 chr11 98463136 98463160 -52320393 + AT_rich Low_complexity Low_complexity 1 24 0 2190 70 0 14 chr11 98463634 98463919 -52319634 - AluY SINE Alu -28 283 3 1427 219 20 0 chr11 98464254 98464560 -52318993 - AluJo SINE Alu 0 312 1 229 299 15 0 chr11 98465126 98465193 -52318360 - MER46A DNA MER2_type 0 236 169 238 330 82 52 chr11 98465210 98465443 -52318110 + L2 LINE L2 2807 3046 -226 1215 223 4 14 chr11 98466395 98466673 -52316880 - AluJo SINE Alu -15 297 23 2516 224 2 24 chr11 98466876 98467497 -52316056 - L1 LINE L1 -801 5345 4739 2029 182 48 32 chr11 98471170 98471609 -52311944 - Tigger2 DNA MER2_type -6 2712 2267 405 162 0 0 chr11 98471593 98471661 -52311892 - Tigger2 DNA MER2_type -2649 69 2 * 2253 8 0 4 chr11 98471878 98472136 -52311417 - L1PA2 LINE L1 -4 6151 5895 5435 20 0 50 chr11 98472136 98473047 -52310506 + L1P1 LINE L1 4711 5564 -591 1762 127 52 0 chr11 98474236 98474523 -52309030 + AluSx SINE Alu 1 301 0 488 265 15 40 chr11 98475625 98475825 -52307728 - L1MB7 LINE L1 -93 6091 5897 222 150 0 0 chr11 98476044 98476084 -52307469 + (TTC)n Simple_repeat Simple_repeat 3 42 0 1631 148 57 13 chr11 98476095 98476393 -52307160 - AluSx SINE Alu -1 311 1 4557 99 121 15 chr11 98477501 98477902 -52305651 + L1PA6 LINE L1 5340 5697 -457 2212 84 13 26 chr11 98477902 98478211 -52305342 + AluY SINE Alu 1 305 -6 4557 99 121 15 chr11 98478211 98478546 -52305007 + L1PA6 LINE L1 5697 6154 0 1308 164 47 53 chr11 98479162 98479562 -52303991 + L1MA5A LINE L1 5936 6297 0 303 104 0 0 chr11 98480704 98480752 -52302801 + (TG)n Simple_repeat Simple_repeat 2 49 0 268 266 28 85 chr11 98480767 98480944 -52302609 - L1MEc LINE L1 -4715 1681 1515 237 266 9 64 chr11 98480951 98481060 -52302493 + CT-rich Low_complexity Low_complexity 2 104 0 449 76 0 130 chr11 98481081 98481131 -52302422 - MADE1 DNA Mariner 0 80 46 2082 141 0 3 chr11 98481131 98481444 -52302109 + AluSx SINE Alu 1 312 0 449 76 0 130 chr11 98481444 98481485 -52302068 - MADE1 DNA Mariner -34 46 1 25 31 0 0 chr11 98481678 98481710 -52301843 + AT_rich Low_complexity Low_complexity 1 32 0 589 284 51 34 chr11 98481710 98482066 -52301487 - L1MEc LINE L1 -5451 945 584 436 262 18 30 chr11 98482721 98482884 -52300669 - MER115 DNA AcHobo -33 660 500 2331 168 153 17 chr11 98482884 98483415 -52300138 - LTR26 LTR ERV1 0 603 1 589 191 0 0 chr11 98484827 98484937 -52298616 - MER46A DNA MER2_type -1 235 126 353 205 0 131 chr11 98485004 98485090 -52298463 - MER46A DNA MER2_type -130 106 39 428 92 0 0 chr11 98485090 98485155 -52298398 - L1MA1 LINE L1 0 6302 6238 353 205 0 131 chr11 98485155 98485190 -52298363 - MER46A DNA MER2_type -197 39 1 1138 235 0 12 chr11 98486340 98486583 -52296970 + AluJo SINE Alu 57 296 -16 2062 109 3 3 chr11 98487189 98487503 -52296050 - AluSx SINE Alu 0 314 1 198 265 20 0 chr11 98487955 98488004 -52295549 - L2 LINE L2 -665 2649 2600 558 135 21 10 chr11 98488245 98488341 -52295212 - Tigger7 DNA MER2_type -273 2314 2218 2906 202 88 23 chr11 98488343 98489047 -52294506 - Tigger7 DNA MER2_type -1719 768 19 331 123 49 19 chr11 98489083 98489245 -52294308 + (TTATA)n Simple_repeat Simple_repeat 5 171 0 22 0 0 0 chr11 98489638 98489660 -52293893 + AT_rich Low_complexity Low_complexity 1 22 0 1206 212 8 19 chr11 98489838 98490097 -52293456 + AluJo SINE Alu 11 266 -46 188 227 0 23 chr11 98491156 98491200 -52292353 + L3b LINE CR1 1530 1572 -11 290 189 40 14 chr11 98491285 98491359 -52292194 - MLT2B1 LTR ERVL 0 520 445 1796 149 31 16 chr11 98491360 98491628 -52291925 + MER7A DNA MER2_type 22 295 -2743 1731 169 0 41 chr11 98491628 98491942 -52291611 + AluSx SINE Alu 1 301 -11 1796 149 31 16 chr11 98491942 98491994 -52291559 + MER7A DNA MER2_type 295 345 -1 566 291 0 0 chr11 98492001 98492135 -52291418 - MLT2B3 LTR ERVL -46 508 375 * 1055 212 21 21 chr11 98492131 98492372 -52291181 - MLT2B3 LTR ERVL -313 241 1 526 136 0 58 chr11 98492597 98492700 -52290853 - L1PA11 LINE L1 0 6174 6078 525 345 35 77 chr11 98494641 98495008 -52288545 - L2 LINE L2 -9 3304 2959 300 111 0 0 chr11 98495008 98495053 -52288500 + (TG)n Simple_repeat Simple_repeat 1 45 0 525 345 35 77 chr11 98495053 98495249 -52288304 - L2 LINE L2 -354 2959 2756 204 111 0 0 chr11 98496787 98496823 -52286730 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 207 0 0 0 chr11 98498647 98498670 -52284883 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr11 98500657 98500679 -52282874 + AT_rich Low_complexity Low_complexity 1 22 0 602 278 0 0 chr11 98500691 98500817 -52282736 + FRAM SINE Alu 1 118 -58 331 103 17 35 chr11 98502009 98502067 -52281486 - MLT2B1 LTR ERVL 0 520 464 * 1032 200 82 5 chr11 98502061 98502281 -52281272 + Tigger3(Golem) DNA MER2_type 2791 3027 -2 312 351 37 0 chr11 98502291 98502425 -52281128 - MLT2B3 LTR ERVL -46 508 370 * 1044 205 39 13 chr11 98502406 98502635 -52280918 - MLT2B3 LTR ERVL -315 239 5 307 326 58 64 chr11 98504819 98505132 -52278421 - L2 LINE L2 0 3313 3003 347 206 0 26 chr11 98505206 98505361 -52278192 + (TA)n Simple_repeat Simple_repeat 1 151 0 210 408 25 0 chr11 98505361 98505481 -52278072 - L2 LINE L2 -341 2973 2851 339 78 0 0 chr11 98507123 98507174 -52276379 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr11 98507348 98507369 -52276184 + AT_rich Low_complexity Low_complexity 1 21 0 775 64 0 0 chr11 98508283 98508377 -52275176 + MER4E LTR ERV1 651 744 -22 7180 55 16 12 chr11 98508377 98509972 -52273581 + SVA Other Other 1 1369 -17 25 51 0 0 chr11 98510088 98510127 -52273426 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr11 98510740 98510763 -52272790 + AT_rich Low_complexity Low_complexity 1 23 0 302 279 171 11 chr11 98511854 98512223 -52271330 + L1M4 LINE L1 4915 5342 -804 308 239 29 134 chr11 98512236 98512445 -52271108 - L1M2 LINE L1 -5905 944 758 181 118 40 26 chr11 98512871 98512947 -52270606 + (TA)n Simple_repeat Simple_repeat 1 77 0 1585 163 42 45 chr11 98513899 98514212 -52269341 + AluJb SINE Alu 1 312 0 231 204 0 0 chr11 98514212 98514261 -52269292 + GA-rich Low_complexity Low_complexity 1 49 0 248 276 92 11 chr11 98514311 98514398 -52269155 + MLT1L LTR MaLR 105 198 -417 386 134 119 0 chr11 98514498 98514565 -52268988 + MSTA LTR MaLR 286 360 -68 252 0 0 0 chr11 98515449 98515477 -52268076 + (T)n Simple_repeat Simple_repeat 1 28 0 234 0 0 0 chr11 98515637 98515663 -52267890 + (T)n Simple_repeat Simple_repeat 1 26 0 661 171 185 0 chr11 98515663 98515809 -52267744 + MSTA LTR MaLR 256 428 0 397 128 0 77 chr11 98516594 98516672 -52266881 + MER115 DNA AcHobo 508 579 -114 414 200 32 0 chr11 98516747 98516842 -52266711 + MER115 DNA AcHobo 588 685 -8 201 39 0 0 chr11 98517224 98517250 -52266303 + (TG)n Simple_repeat Simple_repeat 2 27 0 34 24 0 0 chr11 98517349 98517390 -52266163 + AT_rich Low_complexity Low_complexity 1 41 0 556 246 0 16 chr11 98517432 98517554 -52265999 + FLAM_A SINE Alu 1 120 -13 195 42 0 0 chr11 98517569 98517593 -52265960 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1443 193 22 39 chr11 98517676 98517987 -52265566 + AluJb SINE Alu 2 307 -5 815 188 107 28 chr11 98518089 98518391 -52265162 + LTR48 LTR ERV1 409 786 -1 21 0 0 0 chr11 98518455 98518476 -52265077 + AT_rich Low_complexity Low_complexity 1 21 0 45 0 0 0 chr11 98518516 98518561 -52264992 + AT_rich Low_complexity Low_complexity 1 45 0 2182 210 54 12 chr11 98518561 98519196 -52264357 + L1ME LINE L1 5135 5796 -370 2342 57 13 25 chr11 98519396 98519711 -52263842 - AluY SINE Alu 0 311 1 273 304 7 81 chr11 98520209 98520357 -52263196 + L2 LINE L2 3176 3312 -1 225 287 23 23 chr11 98520420 98520507 -52263046 + L1M4 LINE L1 5495 5581 -603 1830 264 70 37 chr11 98520588 98521178 -52262375 + MLT1E2 LTR MaLR 18 626 0 1707 30 0 0 chr11 98521180 98521415 -52262138 - L1PA4 LINE L1 -688 5467 5233 5446 35 38 0 chr11 98521415 98522073 -52261480 + L1PA4 LINE L1 5469 6154 -1 29 60 0 0 chr11 98522131 98522181 -52261372 + AT_rich Low_complexity Low_complexity 1 50 0 3940 159 4 34 chr11 98522235 98522963 -52260590 - L1MA4 LINE L1 -278 6022 5317 688 213 0 0 chr11 98522997 98523119 -52260434 - FRAM SINE Alu -22 154 33 2608 179 28 9 chr11 98523119 98523661 -52259892 - L1MA4 LINE L1 -821 5325 4774 34 0 0 0 chr11 98523983 98524017 -52259536 + AT_rich Low_complexity Low_complexity 1 34 0 920 198 0 0 chr11 98524134 98524296 -52259257 + AluJb SINE Alu 137 298 -14 230 226 36 0 chr11 98524303 98524387 -52259166 + (TA)n Simple_repeat Simple_repeat 1 87 0 308 323 19 49 chr11 98525415 98525681 -52257872 - L1MEc LINE L1 -4003 2393 2136 244 286 52 43 chr11 98525886 98526096 -52257457 - HAL1b LINE L1 -444 904 693 21 0 0 0 chr11 98527575 98527596 -52255957 + AT_rich Low_complexity Low_complexity 1 21 0 248 186 51 0 chr11 98527687 98527746 -52255807 - L1MD2 LINE L1 -23 6336 6275 * 986 214 26 46 chr11 98527742 98528045 -52255508 - L1M4 LINE L1 -818 5328 5032 754 189 50 31 chr11 98528058 98528241 -52255312 - AluJo SINE Alu 0 311 126 546 253 43 21 chr11 98528245 98528431 -52255122 - L1M4 LINE L1 -1123 5023 4834 1047 93 0 0 chr11 98528861 98529000 -52254553 - L1PA7 LINE L1 -8 6146 6008 1578 192 0 14 chr11 98529142 98529434 -52254119 - AluJb SINE Alu -24 288 1 5643 137 23 87 chr11 98529677 98531183 -52252370 + L1MA5A LINE L1 4126 5523 -743 452 183 113 26 chr11 98531184 98531299 -52252254 - AluSg/x SINE Alu -20 290 166 4417 120 61 8 chr11 98531299 98532042 -52251511 + L1MA5A LINE L1 5512 6293 -4 2117 142 0 0 chr11 98532174 98532476 -52251077 + AluSx SINE Alu 1 302 -10 31 0 0 0 chr11 98532570 98532601 -52250952 + AT_rich Low_complexity Low_complexity 1 31 0 248 247 219 0 chr11 98532608 98532681 -52250872 - MER5A DNA MER1_type -92 97 9 305 197 118 126 chr11 98532722 98532807 -52250746 + MER5B DNA MER1_type 31 116 -62 2365 80 0 3 chr11 98532807 98533109 -52250444 - AluY SINE Alu -10 301 1 305 197 118 126 chr11 98533109 98533150 -52250403 + MER5B DNA MER1_type 116 156 -22 1367 137 105 41 chr11 98533995 98534256 -52249297 + L1MA7 LINE L1 5955 6241 -50 189 0 0 0 chr11 98534256 98534277 -52249276 + (TA)n Simple_repeat Simple_repeat 2 22 0 1367 137 105 41 chr11 98534277 98534329 -52249224 + L1MA7 LINE L1 6241 6288 -3 22 0 0 0 chr11 98534329 98534351 -52249202 + AT_rich Low_complexity Low_complexity 1 22 0 1530 219 40 90 chr11 98534492 98534642 -52248911 - L1ME1 LINE L1 -5 6230 6074 706 192 8 0 chr11 98534642 98534772 -52248781 - FLAM_C SINE Alu -2 131 1 1530 219 40 90 chr11 98534772 98535083 -52248470 - L1ME1 LINE L1 -161 6074 5800 1923 141 18 0 chr11 98535083 98535386 -52248167 - AluSx SINE Alu 0 309 2 1530 219 40 90 chr11 98535386 98535501 -52248052 - L1ME1 LINE L1 -435 5800 5681 719 250 58 14 chr11 98535501 98535657 -52247896 + MER90 LTR ERV1 385 554 -60 2123 132 3 0 chr11 98535657 98535960 -52247593 + AluSx SINE Alu 1 304 -8 719 250 58 14 chr11 98535960 98536011 -52247542 + MER90 LTR ERV1 554 601 -13 2241 256 56 20 chr11 98536024 98537315 -52246238 - L1MEc LINE L1 -2741 3474 2153 797 184 141 0 chr11 98537339 98537573 -52245980 - L1MEc LINE L1 -4181 2215 1949 207 69 0 0 chr11 98537952 98537981 -52245572 + (T)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr11 98538004 98538026 -52245527 + GC_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr11 98538144 98538170 -52245383 + (T)n Simple_repeat Simple_repeat 1 26 0 10479 144 55 18 chr11 98538170 98540019 -52243534 - Tigger2 DNA MER2_type -800 1918 2 3391 241 33 76 chr11 98540020 98541044 -52242509 - L1ME1 LINE L1 -878 5337 4395 701 207 0 0 chr11 98541044 98541165 -52242388 - FLAM_C SINE Alu -11 122 2 3391 241 33 76 chr11 98541165 98541613 -52241940 - L1ME1 LINE L1 -1820 4395 3929 817 307 25 0 chr11 98541660 98542025 -52241528 - L1ME1 LINE L1 -3588 2627 2254 * 1264 289 95 44 chr11 98542004 98543092 -52240461 - L1ME1 LINE L1 -4013 2383 1241 415 229 38 9 chr11 98543183 98543288 -52240265 + Tigger5 DNA MER2_type 2215 2322 -1 733 343 48 28 chr11 98543550 98543875 -52239678 - L2 LINE L2 -2630 684 346 2161 127 7 3 chr11 98543875 98544183 -52239370 + AluSq SINE Alu 1 309 -4 733 343 48 28 chr11 98544183 98544315 -52239238 - L2 LINE L2 -2968 346 218 597 290 77 52 chr11 98544341 98544706 -52238847 + MLT1L LTR MaLR 37 410 -205 557 301 102 5 chr11 98545469 98545655 -52237898 + MIR SINE MIR 53 256 -6 24 0 0 0 chr11 98545697 98545721 -52237832 + AT_rich Low_complexity Low_complexity 1 24 0 270 0 0 0 chr11 98545759 98545789 -52237764 + (T)n Simple_repeat Simple_repeat 1 30 0 1949 121 0 32 chr11 98545926 98546239 -52237314 - AluY SINE Alu -8 303 1 256 315 11 0 chr11 98546731 98546820 -52236733 + ERVL LTR ERVL 4580 4669 -1095 1991 123 0 0 chr11 98546848 98547125 -52236428 - AluSg SINE Alu -33 277 1 349 289 83 67 chr11 98547322 98547502 -52236051 + ERVL LTR ERVL 4863 5045 -719 325 279 79 21 chr11 98547674 98547814 -52235739 + ERVL LTR ERVL 5255 5402 -362 1013 138 162 121 chr11 98547878 98548168 -52235385 - AluJo SINE Alu 0 302 1 560 189 38 0 chr11 98548397 98548503 -52235050 - MER5A DNA MER1_type -78 111 2 260 254 0 0 chr11 98548695 98548758 -52234795 + LTR67 LTR ERVL 19 81 -476 189 0 0 0 chr11 98549021 98549042 -52234511 + (A)n Simple_repeat Simple_repeat 1 21 0 226 253 266 0 chr11 98549042 98549121 -52234432 + LTR67 LTR ERVL 437 536 -21 1766 187 9 88 chr11 98549811 98550277 -52233276 - L1MA9 LINE L1 -31 6281 5853 2577 97 8 0 chr11 98550519 98550871 -52232682 - THE1A LTR MaLR 0 355 1 6233 102 0 3 chr11 98550888 98551752 -52231801 - THE1A-int LTR MaLR -719 861 1 2651 89 14 0 chr11 98551752 98552102 -52231451 - THE1A LTR MaLR 0 355 1 668 311 134 3 chr11 98552944 98553227 -52230326 - L2 LINE L2 -532 2782 2463 736 185 8 0 chr11 98554150 98554280 -52229273 + FLAM_C SINE Alu 8 138 -5 21 0 0 0 chr11 98555326 98555347 -52228206 + AT_rich Low_complexity Low_complexity 1 21 0 1869 211 80 53 chr11 98556400 98557027 -52226526 - LTR48B LTR ERV1 0 644 1 252 86 0 0 chr11 98558163 98558198 -52225355 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 206 282 231 0 chr11 98558213 98558291 -52225262 - L2 LINE L2 -12 3301 3206 315 225 21 49 chr11 98559256 98559271 -52224282 - L1MA10 LINE L1 -1 6333 6319 2088 206 96 24 chr11 98559271 98559854 -52223699 - L1ME1 LINE L1 -5 6161 5537 3427 136 32 19 chr11 98559856 98560489 -52223064 + L1MA4 LINE L1 5653 6293 -7 1562 179 0 53 chr11 98560598 98560780 -52222773 - AluJo SINE Alu -26 286 125 216 0 0 0 chr11 98560780 98560804 -52222749 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1562 179 0 53 chr11 98560804 98560923 -52222630 - AluJo SINE Alu -187 125 1 4606 143 65 1 chr11 98560955 98561712 -52221841 - Tigger2 DNA MER2_type -1 2717 1913 225 0 0 0 chr11 98561712 98561737 -52221816 + (T)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chr11 98561962 98561984 -52221569 + (A)n Simple_repeat Simple_repeat 1 22 0 2211 88 0 25 chr11 98562025 98562345 -52221208 - AluSx SINE Alu 0 312 1 322 359 80 65 chr11 98563297 98563634 -52219919 - L2 LINE L2 -21 3251 2910 614 367 138 14 chr11 98563725 98564441 -52219112 - L2 LINE L2 -493 2821 2017 212 200 13 40 chr11 98564936 98565011 -52218542 + A-rich Low_complexity Low_complexity 3 75 0 2057 116 3 25 chr11 98565103 98565421 -52218132 - AluSp SINE Alu -1 312 2 1787 142 20 23 chr11 98565650 98565953 -52217600 + AluSx SINE Alu 1 302 -10 701 297 36 20 chr11 98566768 98567017 -52216536 + MIR SINE MIR 5 257 -5 519 294 51 22 chr11 98567024 98567299 -52216254 - L1ME LINE L1 -297 5824 5542 362 330 0 0 chr11 98567357 98567454 -52216099 - L3 LINE CR1 -102 1475 1379 209 380 42 68 chr11 98567524 98567861 -52215692 - L2 LINE L2 -9 3263 2936 292 175 58 15 chr11 98568578 98568670 -52214883 - L1MA9 LINE L1 -51 6283 6177 1514 226 41 12 chr11 98568755 98569166 -52214387 - L1ME1 LINE L1 -294 5941 5519 2855 217 59 106 chr11 98569188 98570486 -52213067 - L1ME1 LINE L1 -1444 4771 3534 633 152 53 0 chr11 98570534 98570705 -52212848 + (TA)n Simple_repeat Simple_repeat 1 180 0 300 279 12 12 chr11 98570711 98570797 -52212756 - L1MC4 LINE L1 -1339 6703 6618 234 141 14 42 chr11 98570798 98570869 -52212684 + L1MCa LINE L1 1996 2064 -4362 541 130 68 0 chr11 98570869 98571031 -52212522 + (TA)n Simple_repeat Simple_repeat 2 174 0 230 60 90 15 chr11 98571184 98571251 -52212302 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 1371 181 36 229 chr11 98571253 98571540 -52212013 - L1ME1 LINE L1 -2697 3518 3177 672 158 7 58 chr11 98571540 98571679 -52211874 - FLAM_C SINE Alu -1 132 1 1371 181 36 229 chr11 98571679 98571934 -52211619 - L1ME1 LINE L1 -3038 3177 3067 983 178 5 22 chr11 98571934 98572119 -52211434 - AluJo SINE Alu -45 267 86 1371 181 36 229 chr11 98572119 98572475 -52211078 - L1ME1 LINE L1 -3148 3067 2644 23 33 0 0 chr11 98572548 98572578 -52210975 + AT_rich Low_complexity Low_complexity 1 30 0 318 170 0 0 chr11 98572618 98572671 -52210882 - L1ME1 LINE L1 -6300 96 44 21 36 0 0 chr11 98572977 98573005 -52210548 + AT_rich Low_complexity Low_complexity 1 28 0 2145 103 0 0 chr11 98573044 98573334 -52210219 - AluSc SINE Alu -19 290 1 258 329 0 0 chr11 98573337 98573422 -52210131 - L1MD3 LINE L1 -10 7985 7901 600 292 64 0 chr11 98573901 98574072 -52209481 + MIR SINE MIR 70 251 -11 323 279 273 0 chr11 98574312 98574473 -52209080 + L2 LINE L2 3109 3313 0 2279 92 3 10 chr11 98574986 98575292 -52208261 + AluSp SINE Alu 2 305 -8 241 331 99 28 chr11 98575504 98575685 -52207868 - L2 LINE L2 -249 3023 2830 361 229 63 111 chr11 98575858 98576129 -52207424 - MER31-int LTR ERV1 -3661 1275 1018 394 172 69 110 chr11 98576536 98576681 -52206872 - LTR37A LTR ERV1 -210 216 78 552 252 8 8 chr11 98576740 98576863 -52206690 - L2 LINE L2 0 3313 3191 24 53 0 0 chr11 98577805 98577843 -52205710 + AT_rich Low_complexity Low_complexity 1 38 0 246 286 0 0 chr11 98578032 98578095 -52205458 + L1MC4 LINE L1 7830 7892 -150 22 56 0 0 chr11 98578546 98578582 -52204971 + AT_rich Low_complexity Low_complexity 1 36 0 440 42 99 0 chr11 98579677 98579748 -52203805 - L1PA13 LINE L1 -4 6159 6082 186 337 34 22 chr11 98579764 98579853 -52203700 + L2 LINE L2 2934 3023 -249 22 35 0 0 chr11 98579901 98579930 -52203623 + AT_rich Low_complexity Low_complexity 1 29 0 198 133 0 0 chr11 98579982 98580012 -52203541 + MIR SINE MIR 227 256 -6 3174 121 9 0 chr11 98580215 98580679 -52202874 - L1PA13 LINE L1 -88 6075 5608 21 0 0 0 chr11 98581196 98581217 -52202336 + AT_rich Low_complexity Low_complexity 1 21 0 198 118 0 0 chr11 98581601 98581635 -52201918 + (TG)n Simple_repeat Simple_repeat 1 34 0 2336 88 0 0 chr11 98581867 98582172 -52201381 + AluY SINE Alu 1 305 -6 1176 99 0 0 chr11 98582184 98582336 -52201217 + AluSq SINE Alu 3 154 -159 3709 99 96 87 chr11 98582336 98583676 -52199877 + pTR5 LTR ERV1 747 2432 -6 963 191 0 0 chr11 98583676 98583844 -52199709 + AluSg/x SINE Alu 138 305 -7 355 235 45 76 chr11 98583845 98583977 -52199576 - MER5A DNA MER1_type -55 134 7 250 154 200 0 chr11 98584773 98584838 -52198715 + FLAM_A SINE Alu 56 133 0 329 361 63 77 chr11 98585782 98586225 -52197328 - L2 LINE L2 0 3272 2836 373 149 179 0 chr11 98587209 98587276 -52196277 + FRAM/FAM SINE Alu 1 77 -89 240 111 0 0 chr11 98587297 98587333 -52196220 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 313 288 162 39 chr11 98587860 98588089 -52195464 + L2 LINE L2 3021 3277 -36 254 182 55 18 chr11 98588176 98588231 -52195322 - MIR SINE MIR -98 164 108 186 167 0 0 chr11 98588999 98589035 -52194518 + (CATATA)n Simple_repeat Simple_repeat 6 41 0 545 110 0 50 chr11 98589364 98589464 -52194089 + AluS SINE Alu 1 95 -217 413 160 8 102 chr11 98589531 98589715 -52193838 + AluSp/q SINE Alu 176 303 0 205 241 46 11 chr11 98590020 98590107 -52193446 + T-rich Low_complexity Low_complexity 2 91 0 1887 157 68 0 chr11 98590168 98590506 -52193047 + MER46B DNA MER2_type 1 236 0 320 67 0 0 chr11 98591077 98591122 -52192431 + MADE1 DNA Mariner 2 46 -34 253 333 0 0 chr11 98591142 98591223 -52192330 + MER91B DNA MER1_type 92 172 -18 216 0 0 0 chr11 98591292 98591316 -52192237 + (TG)n Simple_repeat Simple_repeat 1 24 0 432 67 0 0 chr11 98592933 98592993 -52190560 + (T)n Simple_repeat Simple_repeat 1 60 0 450 0 0 0 chr11 98593203 98593253 -52190300 + (T)n Simple_repeat Simple_repeat 1 50 0 939 135 0 0 chr11 98593253 98593386 -52190167 - AluSq/x SINE Alu -180 133 1 2364 78 0 0 chr11 98594023 98594319 -52189234 + AluY SINE Alu 1 296 -15 540 296 85 28 chr11 98594571 98594818 -52188735 + MIR SINE MIR 2 262 0 313 393 30 7 chr11 98594884 98595019 -52188534 - L2 LINE L2 -14 3258 3121 264 125 0 0 chr11 98595377 98595417 -52188136 - LTR41 LTR ERVL -1 772 733 270 0 0 0 chr11 98595700 98595730 -52187823 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 374 284 83 12 chr11 98595736 98595905 -52187648 + L2 LINE L2 1792 1972 -1342 1115 223 51 30 chr11 98596373 98596709 -52186844 - MER2 DNA MER2_type -1 343 1 201 129 0 0 chr11 98596950 98596981 -52186572 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 25 0 0 0 chr11 98597351 98597376 -52186177 + AT_rich Low_complexity Low_complexity 1 25 0 420 278 0 0 chr11 98597440 98597537 -52186016 + MER5A DNA MER1_type 10 106 -83 21 0 0 0 chr11 98598476 98598497 -52185056 + AT_rich Low_complexity Low_complexity 1 21 0 804 321 98 3 chr11 98598897 98599184 -52184369 - L3 LINE CR1 -11 1566 1253 2178 148 19 3 chr11 98599184 98599543 -52184010 + MER47A DNA MER2_type 2 366 0 187 314 29 0 chr11 98599581 98599651 -52183902 - L3 LINE CR1 -419 1158 1087 214 250 248 27 chr11 98599682 98599795 -52183758 + MIR SINE MIR 38 176 -64 323 298 79 0 chr11 98599891 98600005 -52183548 + MIR SINE MIR 53 175 -87 21 0 0 0 chr11 98600062 98600083 -52183470 + AT_rich Low_complexity Low_complexity 1 21 0 25 83 0 0 chr11 98600212 98600272 -52183281 + AT_rich Low_complexity Low_complexity 1 60 0 301 161 12 12 chr11 98600406 98600431 -52183122 + (TA)n Simple_repeat Simple_repeat 2 26 -56 1907 162 27 0 chr11 98600431 98600765 -52182788 - MER2 DNA MER2_type -1 343 1 301 161 12 12 chr11 98600765 98600820 -52182733 + (TA)n Simple_repeat Simple_repeat 25 82 0 277 266 32 0 chr11 98600851 98600975 -52182578 + (TA)n Simple_repeat Simple_repeat 2 129 0 1387 186 19 8 chr11 98601022 98601280 -52182273 + AluJo SINE Alu 1 261 -51 31 26 0 0 chr11 98601495 98601533 -52182020 + AT_rich Low_complexity Low_complexity 1 38 0 4224 18 12 2 chr11 98601640 98601655 -52181898 + L1P1 LINE L1 4872 4885 -1270 4596 11 4 18 chr11 98601655 98602208 -52181345 - L1PA2 LINE L1 0 6155 5611 4224 18 12 2 chr11 98602208 98602944 -52180609 + L1PA2 LINE L1 4885 5626 -529 208 154 19 58 chr11 98603483 98603535 -52180018 + (TATG)n Simple_repeat Simple_repeat 2 51 0 2002 140 104 0 chr11 98603535 98603900 -52179653 - MER57A LTR ERV1 0 403 1 1001 206 34 32 chr11 98604031 98604341 -52179212 - MLT1A1 LTR MaLR 0 365 1 1581 194 99 58 chr11 98604517 98605002 -52178551 + MLT1D LTR MaLR 1 505 0 2368 87 0 3 chr11 98605124 98605423 -52178130 + AluSx SINE Alu 1 298 -14 462 274 87 81 chr11 98605771 98606019 -52177534 - MIR SINE MIR -3 259 8 233 265 71 71 chr11 98606037 98606135 -52177418 - MIR SINE MIR -112 150 53 1744 187 100 55 chr11 98607643 98608172 -52175381 + L1ME2 LINE L1 5514 6066 -98 23 0 0 0 chr11 98608184 98608207 -52175346 + AT_rich Low_complexity Low_complexity 1 23 0 181 256 0 0 chr11 98609016 98609055 -52174498 + MIR SINE MIR 93 131 -77 343 254 81 96 chr11 98609669 98609866 -52173687 + L1ME LINE L1 5603 5796 -325 533 314 53 18 chr11 98612099 98612325 -52171228 + MIR SINE MIR 15 248 -14 551 260 44 39 chr11 98613853 98614057 -52169496 + MIR SINE MIR 2 206 -56 2619 22 0 25 chr11 98614992 98615311 -52168242 + AluYa5 SINE Alu 1 311 0 21 0 0 0 chr11 98615380 98615401 -52168152 + AT_rich Low_complexity Low_complexity 1 21 0 535 208 84 22 chr11 98615710 98615888 -52167665 + L1MD3 LINE L1 7787 7975 -20 22 56 0 0 chr11 98619754 98619790 -52163763 + AT_rich Low_complexity Low_complexity 1 36 0 1972 92 42 7 chr11 98620078 98620361 -52163192 + AluSg SINE Alu 1 293 -17 21 57 0 0 chr11 98620407 98620442 -52163111 + AT_rich Low_complexity Low_complexity 1 35 0 248 294 15 0 chr11 98621496 98621564 -52161989 + MER20B DNA MER1_type 104 172 -611 211 330 89 40 chr11 98622601 98622825 -52160728 + L2 LINE L2 2304 2538 -776 676 252 121 57 chr11 98623031 98623554 -52159999 + L1ME3A LINE L1 5049 5607 -555 768 142 153 34 chr11 98623556 98623732 -52159821 + MER46A DNA MER2_type 1 197 -39 501 257 88 28 chr11 98623739 98623788 -52159765 + L1ME3A LINE L1 5656 5701 -461 2046 103 10 7 chr11 98623788 98624078 -52159475 + AluSq SINE Alu 1 291 -22 501 257 88 28 chr11 98624078 98624364 -52159189 + L1ME3A LINE L1 5701 6020 -142 236 172 40 101 chr11 98624380 98624479 -52159074 + L1ME3A LINE L1 6078 6170 0 188 161 0 0 chr11 98624937 98624968 -52158585 + L2 LINE L2 2487 2517 -797 307 229 0 14 chr11 98624976 98625046 -52158507 - Tigger5 DNA MER2_type 0 2323 2255 234 276 112 56 chr11 98625110 98625324 -52158229 - L2 LINE L2 -43 3270 3045 563 314 215 20 chr11 98625376 98625983 -52157570 + L2 LINE L2 2586 3313 0 283 338 40 0 chr11 98626027 98626101 -52157452 + L2 LINE L2 3188 3264 -8 1062 193 109 36 chr11 98627647 98627776 -52155777 + AluJo SINE Alu 1 119 -193 1792 163 89 9 chr11 98627776 98628113 -52155440 + THE1B LTR MaLR 1 364 0 1062 193 109 36 chr11 98628113 98628258 -52155295 + AluJo SINE Alu 119 295 -17 903 169 85 5 chr11 98628372 98628561 -52154992 - AluJo SINE Alu -108 204 1 222 279 0 29 chr11 98629003 98629071 -52154482 + L3 LINE CR1 823 888 -689 454 299 139 21 chr11 98630149 98630343 -52153210 + MIR SINE MIR 46 262 0 262 152 190 13 chr11 98630373 98630452 -52153101 + MER104 DNA Tc2 40 132 -48 2040 86 19 0 chr11 98633281 98633550 -52150003 + AluSq SINE Alu 25 298 -15 212 315 76 22 chr11 98633557 98633649 -52149904 - L3b LINE CR1 -1 1582 1486 611 157 14 43 chr11 98634360 98634500 -52149053 + SVA Other Other 468 603 -783 28 0 0 0 chr11 98634586 98634614 -52148939 + AT_rich Low_complexity Low_complexity 1 28 0 2077 131 7 0 chr11 98634625 98634922 -52148631 + AluSx SINE Alu 5 303 -9 1951 115 55 8 chr11 98635037 98635468 -52148085 + MER9 LTR ERVK 1 511 0 1079 106 32 115 chr11 98635603 98635820 -52147733 - MER30 DNA MER1_type -31 199 1 307 288 152 8 chr11 98637553 98637685 -52145868 + MIR SINE MIR 106 256 -6 356 222 156 74 chr11 98639806 98640063 -52143490 - L1ME LINE L1 -318 5803 5526 346 191 79 87 chr11 98640269 98640395 -52143158 - L1ME4a LINE L1 -28 6093 5969 2062 136 0 7 chr11 98640873 98641167 -52142386 + AluSp SINE Alu 1 292 -21 31 0 0 0 chr11 98641167 98641198 -52142355 + AT_rich Low_complexity Low_complexity 1 31 0 233 289 73 51 chr11 98641503 98641818 -52141735 - L1M4 LINE L1 -3650 2496 2175 279 280 168 0 chr11 98641901 98642008 -52141545 + MIR SINE MIR 97 221 -41 25 51 0 0 chr11 98642189 98642228 -52141325 + AT_rich Low_complexity Low_complexity 1 39 0 196 410 60 0 chr11 98642229 98642346 -52141207 - L2 LINE L2 -16 3256 3133 2068 146 109 8 chr11 98642575 98642960 -52140593 - MSTB LTR MaLR 0 426 3 8074 196 31 7 chr11 98642962 98644575 -52138978 - MSTB-int LTR MaLR 0 1651 1 2039 151 84 27 chr11 98644575 98644978 -52138575 - MSTB LTR MaLR 0 426 1 4172 265 91 22 chr11 98645109 98645939 -52137614 + L1M4 LINE L1 93 864 -5782 198 103 0 0 chr11 98645939 98645968 -52137585 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4172 265 91 22 chr11 98645968 98646849 -52136704 + L1M4 LINE L1 864 1913 -4733 304 203 0 58 chr11 98646853 98646922 -52136631 - MLT1D LTR MaLR -440 65 1 538 255 75 61 chr11 98647270 98647482 -52136071 + MLT1D-int LTR MaLR 1153 1367 -4 1396 237 49 53 chr11 98647486 98647992 -52135561 + MLT1D LTR MaLR 1 504 -1 300 323 94 18 chr11 98648319 98648542 -52135011 - HAL1b LINE L1 -759 589 350 355 292 130 5 chr11 98649138 98649330 -52134223 + L1MEd LINE L1 596 811 -5308 516 257 104 35 chr11 98649398 98649736 -52133817 + L1MEd LINE L1 895 1255 -4864 1116 148 53 0 chr11 98650419 98650608 -52132945 - LTR64 LTR ERVK 0 558 360 * 1809 264 68 59 chr11 98650604 98651186 -52132367 + LTR38 LTR ERV1 24 556 0 2212 105 6 3 chr11 98651192 98651515 -52132038 - LTR64 LTR ERVK -234 324 1 2822 198 77 8 chr11 98651668 98652392 -52131161 + MER21B LTR ERV1 6 860 -3 2239 76 7 7 chr11 98653273 98653574 -52129979 + AluY SINE Alu 1 301 -10 189 0 0 0 chr11 98653766 98653787 -52129766 + (A)n Simple_repeat Simple_repeat 1 21 0 709 191 51 121 chr11 98653814 98654087 -52129466 - L1MC/D LINE L1 -663 5976 5723 371 211 48 10 chr11 98654085 98654189 -52129364 - L1MC/D LINE L1 -1401 5025 4918 * 401 189 27 0 chr11 98654194 98654268 -52129285 + MER21B LTR ERV1 744 819 -44 714 264 41 4 chr11 98654269 98654515 -52129038 - L1MC/D LINE L1 -1525 4901 4647 29 28 0 0 chr11 98654491 98654527 -52129026 + AT_rich Low_complexity Low_complexity 1 36 0 * 282 179 0 71 chr11 98654527 98654583 -52128970 - FLAM SINE Alu -13 120 69 2985 233 43 11 chr11 98654599 98655450 -52128103 - L1MC/D LINE L1 -1778 4648 3770 1690 163 107 2 chr11 98655441 98655834 -52127719 - L1MA9 LINE L1 0 6312 5879 * 616 45 23 0 chr11 98655847 98655935 -52127618 - L1PA4 LINE L1 0 6155 6066 10413 73 7 0 chr11 98655935 98657303 -52126250 + L1P LINE L1 17 1394 -4752 387 277 49 41 chr11 98657303 98657390 -52126163 - L1MCa LINE L1 -4641 1966 1881 1491 192 10 16 chr11 98657390 98657698 -52125855 - AluJb SINE Alu -6 306 1 387 277 49 41 chr11 98657698 98657897 -52125656 - L1MCa LINE L1 -4726 1881 1494 22 0 0 0 chr11 98657913 98657935 -52125618 + AT_rich Low_complexity Low_complexity 1 22 0 2744 276 91 30 chr11 98658138 98659491 -52124062 - L1MCa LINE L1 -4920 1687 253 614 317 145 22 chr11 98659540 98659941 -52123612 - LTR16A LTR ERVL 0 450 1 974 292 57 9 chr11 98660405 98660939 -52122614 + L1ME3A LINE L1 5367 5945 -217 276 249 197 47 chr11 98660950 98661163 -52122390 + L1ME3A LINE L1 5896 6140 -30 1868 101 75 22 chr11 98661257 98661535 -52122018 + AluSx SINE Alu 1 293 -19 292 328 31 23 chr11 98661897 98662025 -52121528 + HAL1 LINE L1 16 144 -2363 2312 127 25 0 chr11 98662292 98662647 -52120906 - THE1B LTR MaLR 0 364 1 227 234 50 7 chr11 98662701 98662842 -52120711 + (TA)n Simple_repeat Simple_repeat 2 148 0 380 260 13 27 chr11 98663653 98663803 -52119750 - MER114 LTR ERV 0 648 501 22 35 0 0 chr11 98663844 98663873 -52119680 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 98663992 98664013 -52119540 + AT_rich Low_complexity Low_complexity 1 21 0 2094 66 0 4 chr11 98664115 98664388 -52119165 + AluY SINE Alu 28 299 -12 440 309 0 16 chr11 98665336 98665462 -52118091 + L2 LINE L2 3190 3313 0 1947 100 52 3 chr11 98666047 98666338 -52117215 - AluSx SINE Alu -7 305 1 2174 40 50 33 chr11 98666458 98666757 -52116796 + AluY SINE Alu 4 307 -4 198 0 0 0 chr11 98666857 98666879 -52116674 + (A)n Simple_repeat Simple_repeat 1 22 0 800 320 91 55 chr11 98666929 98667069 -52116484 - L2 LINE L2 -339 2975 2842 1817 199 88 2 chr11 98667069 98667466 -52116087 - MSTB1 LTR MaLR 0 432 2 800 320 91 55 chr11 98667466 98667850 -52115703 - L2 LINE L2 -472 2842 2432 2591 156 19 5 chr11 98667872 98668294 -52115259 + MSTA LTR MaLR 1 428 0 236 250 0 16 chr11 98669047 98669111 -52114442 + (TTCA)n Simple_repeat Simple_repeat 2 64 0 236 283 54 0 chr11 98669774 98669866 -52113687 + MLT1K LTR MaLR 487 583 -5 224 425 32 0 chr11 98669874 98669968 -52113585 - L2 LINE L2 -230 3042 2946 1144 106 0 6 chr11 98670982 98671152 -52112401 - L1PA14 LINE L1 -6 6155 5987 2187 92 9 19 chr11 98671321 98671636 -52111917 + AluSx SINE Alu 1 312 0 22 70 0 0 chr11 98671981 98672024 -52111529 + AT_rich Low_complexity Low_complexity 1 43 0 218 305 171 9 chr11 98672612 98672717 -52110836 - MIR SINE MIR -67 141 20 628 294 22 17 chr11 98672929 98673210 -52110343 + L1M2 LINE L1 460 1643 -5853 706 215 0 7 chr11 98674566 98674715 -52108838 + L1M2 LINE L1 2309 2456 -5033 * 11417 223 49 10 chr11 98674710 98678140 -52105413 + L1M2 LINE L1 3394 6957 -744 462 316 76 32 chr11 98678140 98678456 -52105097 + L2 LINE L2 1776 2105 -1209 580 128 48 170 chr11 98678545 98678733 -52104820 - MER51A LTR ERV1 0 634 470 234 252 34 25 chr11 98679090 98679209 -52104344 + (TATATG)n Simple_repeat Simple_repeat 4 123 0 1659 160 134 21 chr11 98679314 98679695 -52103858 - MSTA LTR MaLR -2 426 3 327 284 0 21 chr11 98679722 98679817 -52103736 + L2 LINE L2 2197 2289 -1025 204 40 0 0 chr11 98680046 98680071 -52103482 + (T)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr11 98680098 98680118 -52103435 + (G)n Simple_repeat Simple_repeat 1 20 0 9330 91 16 10 chr11 98680220 98682654 -52100899 + L1PA7 LINE L1 3516 6154 0 450 302 29 135 chr11 98683233 98683574 -52099979 - L2 LINE L2 0 3272 2968 1001 162 52 29 chr11 98683576 98683786 -52099767 + AluJb SINE Alu 87 301 -11 2447 63 0 3 chr11 98683788 98684088 -52099465 + AluY SINE Alu 2 300 -11 189 0 0 0 chr11 98684189 98684210 -52099343 + (TTCC)n Simple_repeat Simple_repeat 4 24 0 20162 128 12 53 chr11 98684292 98687990 -52095563 + L1P LINE L1 348 3895 -2251 349 47 0 0 chr11 98687995 98688038 -52095515 + L1P LINE L1 4090 4132 -2014 369 109 0 0 chr11 98688138 98688193 -52095360 + (GGAA)n Simple_repeat Simple_repeat 4 58 0 2516 148 10 2 chr11 98688195 98688595 -52094958 - L1P3 LINE L1 -6055 406 4 207 225 0 0 chr11 98688598 98688638 -52094915 + T-rich Low_complexity Low_complexity 1 40 0 1177 92 12 0 chr11 98688639 98688802 -52094751 - LTR17 LTR ERV1 -455 325 161 2235 108 10 0 chr11 98689601 98689898 -52093655 + AluSx SINE Alu 1 300 -12 1088 104 0 0 chr11 98689961 98690105 -52093448 - L1P LINE L1 -5767 379 236 3011 36 3 0 chr11 98690105 98690467 -52093086 + L1PA4 LINE L1 5788 6150 -5 649 256 70 0 chr11 98692397 98692553 -52091000 - MER58B DNA MER1_type -1 340 174 25 0 0 0 chr11 98692577 98692602 -52090951 + AT_rich Low_complexity Low_complexity 1 25 0 6553 35 1 4 chr11 98692606 98693402 -52090151 - L1PA4 LINE L1 0 6155 5362 4286 39 4 0 chr11 98693399 98693934 -52089619 + L1PA4 LINE L1 4830 5366 -780 * 492 344 64 26 chr11 98694076 98694419 -52089134 - L2 LINE L2 0 3313 2958 242 61 30 0 chr11 98694423 98694456 -52089097 + MLT2C1 LTR ERVL 364 397 0 7321 187 22 50 chr11 98694457 98696251 -52087302 - L1MB1 LINE L1 -34 5958 4171 530 189 0 0 chr11 98696251 98696346 -52087207 - FLAM_A SINE Alu -25 117 23 7321 187 22 50 chr11 98696346 98697079 -52086474 - L1MB1 LINE L1 -1821 4171 3419 2067 253 25 31 chr11 98697094 98697751 -52085802 - L1MB1 LINE L1 -5380 511 1 998 308 89 17 chr11 98697757 98698228 -52085325 - L2 LINE L2 -605 2709 2205 905 328 107 3 chr11 98698250 98698616 -52084937 + L1MEc LINE L1 71 474 -5922 250 214 0 0 chr11 98698620 98698662 -52084891 + MLT1F1 LTR MaLR 23 64 -503 1722 203 3 0 chr11 98698662 98698982 -52084571 + L1MD3 LINE L1 7426 7746 -249 2738 138 88 23 chr11 98698982 98699468 -52084085 - Tigger1 DNA MER2_type 0 2418 1901 11217 133 39 21 chr11 98701084 98702174 -52081379 - Tigger1 DNA MER2_type -501 1917 777 3089 50 0 0 chr11 98702174 98702554 -52080999 - L1PA4 LINE L1 0 6155 5776 11217 133 39 21 chr11 98702554 98703346 -52080207 - Tigger1 DNA MER2_type -1641 777 1 656 218 27 50 chr11 98703348 98703415 -52080138 + L1MD3 LINE L1 7759 7826 -169 3511 133 9 6 chr11 98703415 98703940 -52079613 - MER1A DNA MER1_type 0 527 1 656 218 27 50 chr11 98703940 98704092 -52079461 + L1MD3 LINE L1 7826 7973 -22 186 239 22 76 chr11 98705071 98705163 -52078390 + L2 LINE L2 3227 3313 0 222 281 0 0 chr11 98705341 98705405 -52078148 + GA-rich Low_complexity Low_complexity 2 65 0 23 54 0 0 chr11 98705428 98705465 -52078088 + AT_rich Low_complexity Low_complexity 1 37 0 188 254 56 14 chr11 98706616 98706687 -52076866 + L2 LINE L2 3146 3219 -94 233 405 51 19 chr11 98706700 98706858 -52076695 - L2 LINE L2 0 3272 3110 2637 0 0 0 chr11 98707225 98707538 -52076015 - AluYa5 SINE Alu 0 313 1 325 338 33 7 chr11 98707546 98707697 -52075856 - L2 LINE L2 -574 2740 2586 568 347 82 30 chr11 98707721 98708315 -52075238 - L2 LINE L2 -940 2374 1750 229 273 15 15 chr11 98708317 98708383 -52075170 + L2 LINE L2 3244 3309 -4 24 53 0 0 chr11 98708896 98708934 -52074619 + AT_rich Low_complexity Low_complexity 1 38 0 2334 95 0 0 chr11 98709261 98709567 -52073986 + AluY SINE Alu 1 306 -5 7317 134 36 13 chr11 98710145 98710801 -52072752 - HSMAR2 DNA Mariner -4 1298 600 1763 128 169 6 chr11 98710801 98711114 -52072439 + THE1B LTR MaLR 1 364 0 7317 134 36 13 chr11 98711114 98711669 -52071884 - HSMAR2 DNA Mariner -702 600 59 1589 138 5 0 chr11 98711769 98711993 -52071560 - AluSq SINE Alu -86 227 3 329 113 38 0 chr11 98711996 98712049 -52071504 - HSMAR2 DNA Mariner -1247 55 1 22 56 0 19 chr11 98712357 98712392 -52071161 + AT_rich Low_complexity Low_complexity 1 36 -17 2688 142 31 2 chr11 98712392 98712872 -52070681 + L1MB2 LINE L1 5676 6169 -2 22 56 0 19 chr11 98712872 98712890 -52070663 + AT_rich Low_complexity Low_complexity 36 53 0 30006 116 18 57 chr11 98713532 98719938 -52063615 - L1PA7 LINE L1 -5 6149 4 1908 148 11 3 chr11 98721213 98721497 -52062056 - AluSg SINE Alu -24 286 1 2011 116 14 3 chr11 98722850 98723134 -52060419 + AluSg SINE Alu 1 287 -23 14225 40 1 0 chr11 98723137 98724882 -52058671 - L1PA4 LINE L1 -888 5258 3512 7006 34 9 0 chr11 98724886 98725744 -52057809 + L1PA4 LINE L1 5277 6142 -13 308 306 40 55 chr11 98727167 98727366 -52056187 - L2 LINE L2 0 3313 3118 190 294 20 0 chr11 98727891 98727942 -52055611 + L2 LINE L2 3262 3313 0 1482 148 28 11 chr11 98730317 98730600 -52052953 - L1MA9 LINE L1 -14 6298 6011 600 153 18 0 chr11 98730882 98730993 -52052560 - L1MB4 LINE L1 0 6180 6068 1149 153 5 23 chr11 98731033 98731065 -52052488 - L1MB4 LINE L1 -324 5850 5819 1545 186 55 0 chr11 98731065 98731340 -52052213 - AluJb SINE Alu -18 294 5 1149 153 5 23 chr11 98731340 98731522 -52052031 - L1MB4 LINE L1 -355 5819 5640 1642 175 33 0 chr11 98732564 98732858 -52050695 + AluJb SINE Alu 1 303 0 762 278 87 55 chr11 98734069 98734733 -52048820 - L2 LINE L2 0 3313 2589 3559 155 2 1 chr11 98735790 98736358 -52047195 - MER41B LTR ERV1 -68 556 1 204 348 14 0 chr11 98736539 98736608 -52046945 + L2 LINE L2 2731 2800 -514 4415 128 18 22 chr11 98736657 98737369 -52046184 + MER50 LTR ERV1 3 711 -23 503 306 56 83 chr11 98737371 98737517 -52046036 + L2 LINE L2 2829 2977 -295 3689 161 37 30 chr11 98737517 98738239 -52045314 + LTR8A LTR ERV1 1 727 0 503 306 56 83 chr11 98738239 98738465 -52045088 + L2 LINE L2 2977 3191 -81 3842 195 33 50 chr11 98738467 98739292 -52044261 + MER21B LTR ERV1 1 811 -52 230 264 35 0 chr11 98739611 98739698 -52043855 + CT-rich Low_complexity Low_complexity 1 90 0 1353 183 8 4 chr11 98739739 98740002 -52043551 - LTR1B LTR ERV1 -562 264 1 6777 143 22 8 chr11 98740002 98741619 -52041934 - L1MA1 LINE L1 -265 6037 4386 459 139 13 0 chr11 98741619 98741698 -52041855 - MADE1 DNA Mariner 0 80 1 6777 143 22 8 chr11 98741698 98742030 -52041523 - L1MA1 LINE L1 -1916 4386 4060 697 324 91 29 chr11 98742332 98742946 -52040607 + L1MC/D LINE L1 3080 3731 -2415 222 118 0 0 chr11 98743037 98743071 -52040482 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 259 219 0 0 chr11 98743073 98743137 -52040416 - L1MC4 LINE L1 -1339 6703 6640 387 0 0 0 chr11 98743139 98743182 -52040371 + (GA)n Simple_repeat Simple_repeat 2 44 0 1151 172 0 0 chr11 98743184 98743364 -52040189 - AluSx SINE Alu -36 276 97 980 151 29 6 chr11 98743675 98743847 -52039706 + MER61E LTR ERV1 341 516 -53 679 112 19 9 chr11 98743870 98743977 -52039576 - AluSx SINE Alu -205 108 1 421 359 73 0 chr11 98744302 98744561 -52038992 + L1MC/D LINE L1 4306 4583 -1563 1627 157 36 25 chr11 98744573 98744853 -52038700 + AluJo SINE Alu 1 283 -29 217 292 0 0 chr11 98745040 98745088 -52038465 + (TG)n Simple_repeat Simple_repeat 2 49 0 1702 183 40 6 chr11 98745283 98745632 -52037921 + MLT1A1 LTR MaLR 5 365 0 367 343 90 0 chr11 98745845 98746046 -52037507 + L1MC/D LINE L1 5258 5476 -2566 333 292 22 79 chr11 98746417 98746595 -52036958 + L2 LINE L2 2773 2940 -374 640 291 44 22 chr11 98747371 98747646 -52035907 - L1ME3A LINE L1 -43 6127 5847 214 106 43 0 chr11 98747869 98747916 -52035637 + (TG)n Simple_repeat Simple_repeat 2 50 0 2781 222 53 48 chr11 98748237 98749044 -52034509 + L1MB7 LINE L1 5360 6170 -14 2224 192 84 12 chr11 98750337 98750784 -52032769 + LTR45B LTR ERV1 3 524 -1 2325 93 0 0 chr11 98750916 98751205 -52032348 - AluY SINE Alu -20 291 3 22 0 0 0 chr11 98751503 98751525 -52032028 + AT_rich Low_complexity Low_complexity 1 22 0 1265 282 87 37 chr11 98751839 98752300 -52031253 + MLT1G1 LTR MaLR 73 556 -39 21 0 0 0 chr11 98752366 98752387 -52031166 + AT_rich Low_complexity Low_complexity 1 21 0 199 350 0 0 chr11 98752534 98752594 -52030959 - L2 LINE L2 -5 3308 3249 252 299 155 0 chr11 98754255 98754352 -52029201 + MIR SINE MIR 99 210 -52 21 0 0 0 chr11 98754665 98754686 -52028867 + AT_rich Low_complexity Low_complexity 1 21 0 2107 135 6 0 chr11 98755250 98755561 -52027992 - AluSq SINE Alu 0 313 1 1965 162 10 54 chr11 98757901 98758309 -52025244 - MLT1B LTR MaLR 0 390 1 263 290 137 30 chr11 98758342 98758473 -52025080 + MIR3 SINE MIR 35 179 -29 2298 80 23 7 chr11 98759400 98759701 -52023852 + AluY SINE Alu 1 306 -5 324 0 0 0 chr11 98759828 98759864 -52023689 + (TG)n Simple_repeat Simple_repeat 2 37 0 873 224 86 54 chr11 98759900 98760213 -52023340 - L1MC1 LINE L1 -4 6329 6007 299 349 12 0 chr11 98760973 98761059 -52022494 + MIR3 SINE MIR 81 167 -41 205 279 33 0 chr11 98761141 98761202 -52022351 + CT-rich Low_complexity Low_complexity 2 64 0 269 389 50 66 chr11 98761202 98761400 -52022153 - L2 LINE L2 -6 3266 3072 300 385 18 39 chr11 98761755 98761988 -52021565 - L2 LINE L2 -251 3021 2795 1623 176 44 17 chr11 98762555 98762851 -52020702 - AluJb SINE Alu -8 304 1 941 52 0 0 chr11 98764144 98764260 -52019293 - L1PA3 LINE L1 -2 6153 6038 418 319 138 26 chr11 98764273 98764658 -52018895 + L1ME LINE L1 4405 4832 -1314 370 371 70 19 chr11 98764663 98765032 -52018521 + L1ME LINE L1 5293 5680 -484 353 234 81 40 chr11 98765088 98765212 -52018341 - L1MCa LINE L1 -3263 3301 3173 260 206 15 29 chr11 98765290 98765358 -52018195 - L1M4 LINE L1 -3424 2722 2656 1452 171 47 12 chr11 98765358 98765616 -52017937 + AluJb SINE Alu 11 277 -35 25 0 0 0 chr11 98765616 98765641 -52017912 + AT_rich Low_complexity Low_complexity 1 25 0 540 223 32 43 chr11 98765643 98765831 -52017722 - L1M4 LINE L1 -3483 2663 2478 293 257 0 0 chr11 98765832 98765906 -52017647 + AluSc SINE Alu 224 297 -2 1226 245 129 18 chr11 98765917 98766890 -52016663 - L1MCa LINE L1 -3483 3081 2000 741 281 123 32 chr11 98766885 98767226 -52016327 - L1MCa LINE L1 -5673 372 1 * 259 341 31 23 chr11 98767606 98767735 -52015818 - L2 LINE L2 -508 2806 2677 223 359 22 33 chr11 98767835 98768016 -52015537 - MIR SINE MIR -44 218 40 403 270 57 31 chr11 98768230 98768389 -52015164 - MIR SINE MIR -66 196 34 2792 9 0 16 chr11 98768473 98768789 -52014764 - AluYa5 SINE Alu 0 311 1 306 230 207 0 chr11 98768828 98768915 -52014638 + LTR16A LTR ERVL 1 105 -345 2088 111 47 0 chr11 98769001 98769299 -52014254 + AluSx SINE Alu 1 312 0 618 336 78 0 chr11 98769397 98769653 -52013900 + HERV16 LTR ERVL 2 277 -4719 603 345 15 11 chr11 98769711 98769966 -52013587 + HERV16 LTR ERVL 362 620 -4376 1769 168 33 27 chr11 98769966 98770300 -52013253 + MER1B DNA MER1_type 1 336 -1 603 345 15 11 chr11 98770300 98770311 -52013242 + HERV16 LTR ERVL 620 629 -4367 732 247 94 27 chr11 98770321 98770689 -52012864 + MER76 LTR ERV 1 448 -240 336 286 57 9 chr11 98771004 98771109 -52012444 + MER76 LTR ERV 528 637 -51 2396 312 38 19 chr11 98771219 98772863 -52010690 + HERV16 LTR ERVL 774 2511 -2485 201 147 0 0 chr11 98773021 98773055 -52010498 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 284 245 38 136 chr11 98773700 98773884 -52009669 + MER91A DNA MER1_type 1 166 -30 294 264 198 9 chr11 98774417 98774523 -52009030 + L2 LINE L2 3187 3312 -1 1581 190 54 23 chr11 98775782 98776422 -52007131 + L1MC4a LINE L1 5523 6142 -1666 1595 236 36 62 chr11 98776422 98776956 -52006597 - MLT2B1 LTR ERVL 0 520 1 1581 190 54 23 chr11 98776956 98777592 -52005961 + L1MC4a LINE L1 6142 6872 -936 219 36 0 0 chr11 98777592 98777620 -52005933 + (CA)n Simple_repeat Simple_repeat 2 29 0 1581 190 54 23 chr11 98777620 98777699 -52005854 + L1MC4a LINE L1 6872 6947 -861 4162 140 34 5 chr11 98777939 98779306 -52004247 - L1PA14 LINE L1 -11 6150 4705 1131 254 73 45 chr11 98779513 98779962 -52003591 - MLT1C LTR MaLR 0 467 6 327 288 9 27 chr11 98779962 98780073 -52003480 - MIR SINE MIR -93 169 61 558 321 36 73 chr11 98780475 98780833 -52002720 + L2 LINE L2 2928 3272 0 722 267 136 9 chr11 98781166 98781387 -52002166 + MIR SINE MIR 14 262 0 373 277 100 15 chr11 98781373 98781503 -52002050 + L2 LINE L2 3173 3313 0 * 315 253 161 38 chr11 98781857 98782043 -52001510 + MLT1J2 LTR MaLR 2 210 -240 744 266 151 11 chr11 98782096 98782367 -52001186 + LTR50 LTR ERVL 9 317 -478 363 249 181 43 chr11 98782415 98782696 -52000857 + LTR50 LTR ERVL 471 790 -5 284 227 143 34 chr11 98782708 98782827 -52000726 + MLT1J2 LTR MaLR 278 409 -41 241 364 185 31 chr11 98782828 98783114 -52000439 - L2 LINE L2 -1969 1345 1016 33 25 0 0 chr11 98783270 98783310 -52000243 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr11 98783523 98783552 -52000001 + AT_rich Low_complexity Low_complexity 1 29 0 249 316 53 21 chr11 98784332 98784427 -51999126 + L2 LINE L2 3170 3267 -5 364 302 175 16 chr11 98784936 98785125 -51998428 - MIR SINE MIR -32 230 12 541 115 13 0 chr11 98785729 98785807 -51997746 + AluY SINE Alu 212 290 -21 371 221 113 54 chr11 98785939 98786179 -51997374 - HAL1 LINE L1 -11 2496 2243 471 314 61 33 chr11 98786259 98786381 -51997172 + MLT1H LTR MaLR 104 221 -328 2283 79 7 7 chr11 98786381 98786685 -51996868 - AluSx SINE Alu -8 304 1 471 314 61 33 chr11 98786685 98786807 -51996746 + MLT1H LTR MaLR 221 355 -194 558 270 60 70 chr11 98787062 98787234 -51996319 - HAL1 LINE L1 -698 1809 1637 2117 124 0 7 chr11 98787234 98787532 -51996021 + AluSx SINE Alu 1 296 -16 558 270 60 70 chr11 98787532 98787744 -51995809 - HAL1 LINE L1 -870 1637 1429 363 347 60 15 chr11 98787811 98788010 -51995543 + L1 LINE L1 4911 5118 -1028 5441 22 0 9 chr11 98788031 98788793 -51994760 - L1PA3 LINE L1 -671 5484 4732 5793 19 1 0 chr11 98788793 98789456 -51994097 + L1PA3 LINE L1 5486 6152 -3 351 358 0 0 chr11 98789717 98789826 -51993727 - L2 LINE L2 -9 3304 3196 547 280 8 0 chr11 98791158 98791290 -51992263 + MER45A DNA AcHobo 6 138 -40 2079 112 0 0 chr11 98791299 98791620 -51991933 - AluSg SINE Alu 0 325 5 309 189 0 0 chr11 98791624 98791677 -51991876 + MER45A DNA AcHobo 124 176 -2 276 130 0 0 chr11 98791760 98791806 -51991747 + (A)n Simple_repeat Simple_repeat 1 46 0 11691 160 15 8 chr11 98792447 98795484 -51988069 - L1PA11 LINE L1 -13 7599 4587 5304 164 12 0 chr11 98795484 98796523 -51987030 - L1PA11 LINE L1 -3737 3847 2786 664 113 97 32 chr11 98796523 98796647 -51986906 - MER85 DNA T2_type -7 132 1 6716 232 27 36 chr11 98796647 98797048 -51986505 - L1PA11 LINE L1 -4785 2799 2396 267 31 0 0 chr11 98797048 98797080 -51986473 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6716 232 27 36 chr11 98797080 98798694 -51984859 - L1PA11 LINE L1 -5188 2396 1 1584 177 11 7 chr11 98799999 98800281 -51983272 - AluJb SINE Alu -20 292 10 571 199 93 93 chr11 98801279 98801541 -51982012 + MER33 DNA MER1_type 1 265 -2320 2220 126 3 0 chr11 98801541 98801851 -51981702 + AluSx SINE Alu 1 311 -1 571 199 93 93 chr11 98801851 98801890 -51981663 + MER33 DNA MER1_type 264 302 -22 322 296 0 10 chr11 98802652 98802750 -51980803 - MER103 DNA DNA -24 142 46 22 0 0 0 chr11 98803259 98803281 -51980272 + AT_rich Low_complexity Low_complexity 1 22 0 639 218 52 47 chr11 98804153 98804346 -51979207 + MLT1A1 LTR MaLR 1 194 -171 275 91 23 23 chr11 98804357 98804401 -51979152 + MLT1A1 LTR MaLR 353 396 0 2466 73 0 0 chr11 98804428 98804730 -51978823 + AluY SINE Alu 1 302 -9 185 297 16 16 chr11 98805028 98805092 -51978461 - L2 LINE L2 -8 3305 3242 2463 61 6 6 chr11 98805329 98805640 -51977913 - AluY SINE Alu 0 311 1 645 307 35 8 chr11 98806274 98806528 -51977025 - MIR SINE MIR 0 262 2 368 303 202 0 chr11 98807319 98807507 -51976046 + MIR SINE MIR 11 236 -26 335 133 53 0 chr11 98807906 98807981 -51975572 - L1MB3 LINE L1 -15 6168 6090 1062 163 31 15 chr11 98807988 98808184 -51975369 - L1MA4 LINE L1 -279 6021 5823 224 393 82 7 chr11 98808577 98808712 -51974841 - L2 LINE L2 -4 3268 3124 322 304 71 33 chr11 98808786 98808970 -51974583 - L2 LINE L2 -10 3303 3113 5276 132 34 18 chr11 98809321 98810217 -51973336 + L1PBa LINE L1 1 910 -5953 5244 220 8 6 chr11 98810232 98811454 -51972099 + L1 LINE L1 2930 4154 -1992 626 299 113 9 chr11 98811834 98812065 -51971488 + MIR SINE MIR 6 260 -2 399 333 67 18 chr11 98812222 98812447 -51971106 + L2 LINE L2 2806 3041 -272 576 273 154 18 chr11 98812626 98812853 -51970700 + MIR SINE MIR 5 262 0 539 237 7 37 chr11 98812860 98812995 -51970558 + L2 LINE L2 3175 3305 -8 234 278 130 26 chr11 98813411 98813526 -51970027 - L3b LINE CR1 -87 1496 1370 480 231 83 12 chr11 98813685 98813854 -51969699 - L3b LINE CR1 -149 1434 1254 575 60 48 0 chr11 98814271 98814354 -51969199 + L1MA4A LINE L1 6206 6292 -11 23 78 0 0 chr11 98814597 98814648 -51968905 + AT_rich Low_complexity Low_complexity 1 51 0 202 325 84 39 chr11 98814740 98814894 -51968659 - MIR SINE MIR -18 244 84 559 122 10 0 chr11 98815023 98815121 -51968432 + L1MA4A LINE L1 6204 6302 -1 1079 289 131 13 chr11 98815395 98815783 -51967770 - MLT1G LTR MaLR 0 590 157 1559 194 63 3 chr11 98815784 98816277 -51967276 + L1MD2 LINE L1 5078 5606 -753 8638 39 19 1 chr11 98816280 98817356 -51966197 - L1P LINE L1 -1130 5016 3921 2291 213 75 61 chr11 98817356 98818041 -51965512 + L1MD2 LINE L1 5611 6304 -55 396 55 0 0 chr11 98818041 98818096 -51965457 + (T)n Simple_repeat Simple_repeat 1 55 0 42870 32 21 1 chr11 98818100 98824131 -51959422 - L1HS LINE L1 0 6155 2 1847 28 0 0 chr11 98824225 98824442 -51959111 + L1PA4 LINE L1 5933 6149 -6 399 272 165 19 chr11 98824481 98824815 -51958738 + L1M2 LINE L1 1720 2212 -4329 317 214 114 0 chr11 98825019 98825089 -51958464 + MER58 DNA MER1_type 29 106 -235 3941 255 174 10 chr11 98825222 98825888 -51957665 + L1MC4a LINE L1 5790 6345 -1463 374 101 14 0 chr11 98825888 98825957 -51957596 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 3941 255 174 10 chr11 98825957 98826942 -51956611 + L1MC4a LINE L1 6345 7713 -95 23 33 0 0 chr11 98827015 98827045 -51956508 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 98827066 98827095 -51956458 + AT_rich Low_complexity Low_complexity 1 29 0 1296 289 35 15 chr11 98827167 98827572 -51955981 + LTR16C LTR ERVL 79 491 0 1902 129 25 0 chr11 98827806 98828085 -51955468 - AluSx SINE Alu -26 286 1 1604 179 18 98 chr11 98828708 98829105 -51954448 - MLT1A1 LTR MaLR 0 365 1 275 385 84 0 chr11 98829134 98829277 -51954276 + HERV16 LTR ERVL 1422 1576 -3420 903 358 33 12 chr11 98829446 98830111 -51953442 + HERV16 LTR ERVL 1847 2578 -2418 735 161 103 0 chr11 98830111 98830266 -51953287 + L1MA8 LINE L1 6121 6291 0 792 305 114 30 chr11 98830394 98830815 -51952738 + HERV16 LTR ERVL 2754 3169 -2316 962 292 54 66 chr11 98830937 98831345 -51952208 + LTR16C LTR ERVL 87 489 -2 341 283 25 13 chr11 98831354 98831537 -51952016 + L1M4 LINE L1 4422 4606 -1540 246 240 143 52 chr11 98831564 98831718 -51951835 + L1M4 LINE L1 4736 4903 -1243 278 308 30 50 chr11 98831887 98832085 -51951468 + L1ME3A LINE L1 5962 6155 -15 1266 39 0 0 chr11 98832088 98832243 -51951310 - L1PA5 LINE L1 -6 6148 5994 21 82 0 0 chr11 98833655 98833704 -51949849 + AT_rich Low_complexity Low_complexity 1 49 0 199 397 66 20 chr11 98833720 98833871 -51949682 - L2 LINE L2 -1 3271 3114 746 254 73 0 chr11 98833878 98834043 -51949510 + MLT1E LTR MaLR 9 185 -408 904 235 78 8 chr11 98834085 98834328 -51949225 + MLT1E LTR MaLR 328 587 -6 180 264 19 0 chr11 98834405 98834458 -51949095 - L2 LINE L2 -223 3049 2996 255 301 77 42 chr11 98834945 98835088 -51948465 + L2 LINE L2 3162 3309 -4 25 0 0 0 chr11 98835422 98835447 -51948106 + AT_rich Low_complexity Low_complexity 1 25 0 205 68 45 23 chr11 98835760 98835804 -51947749 + A-rich Low_complexity Low_complexity 3 47 0 295 318 148 11 chr11 98835992 98836168 -51947385 + MIR SINE MIR 53 252 -10 206 135 0 27 chr11 98836135 98836172 -51947381 + L2 LINE L2 3224 3259 -13 * 22 80 0 0 chr11 98836854 98836904 -51946649 + AT_rich Low_complexity Low_complexity 1 50 0 291 217 133 12 chr11 98837221 98837304 -51946249 - L2 LINE L2 -15 3298 3206 329 350 29 21 chr11 98837492 98837632 -51945921 - L2 LINE L2 0 3313 3173 1985 142 3 0 chr11 98838272 98838561 -51944992 - AluSx SINE Alu -22 290 1 874 132 63 0 chr11 98838594 98838753 -51944800 - L1MA1 LINE L1 0 6302 6134 320 96 19 0 chr11 98838757 98838809 -51944744 + L1MA1 LINE L1 6052 6104 -198 22 0 0 0 chr11 98839613 98839635 -51943918 + AT_rich Low_complexity Low_complexity 1 22 0 231 257 31 70 chr11 98839746 98839950 -51943603 - L1ME LINE L1 -342 5779 5586 497 246 211 78 chr11 98840069 98840554 -51942999 + MER34 LTR ERV1 1 585 0 3978 37 21 2 chr11 98840741 98841222 -51942331 - LTR2B LTR ERV1 0 490 1 204 380 52 31 chr11 98841587 98841779 -51941774 + MIR SINE MIR 61 256 -6 189 309 206 24 chr11 98842357 98842483 -51941070 - MIR SINE MIR -112 150 2 21 0 0 0 chr11 98842648 98842669 -51940884 + AT_rich Low_complexity Low_complexity 1 21 0 2295 94 7 0 chr11 98842693 98843001 -51940552 + AluSg SINE Alu 1 310 0 536 303 68 55 chr11 98843721 98844028 -51939525 + MLT1I LTR MaLR 16 326 -83 2193 79 3 0 chr11 98844052 98844342 -51939211 + AluY SINE Alu 1 291 -20 1703 139 201 8 chr11 98844502 98844861 -51938692 + MSTA LTR MaLR 1 428 0 26 82 0 0 chr11 98844925 98844986 -51938567 + AT_rich Low_complexity Low_complexity 1 61 0 228 286 0 0 chr11 98845078 98845134 -51938419 - L2 LINE L2 0 3313 3258 193 283 50 58 chr11 98846226 98846346 -51937207 + L2 LINE L2 3185 3303 -10 21 57 0 0 chr11 98846347 98846382 -51937171 + AT_rich Low_complexity Low_complexity 1 35 0 222 254 16 0 chr11 98846705 98846768 -51936785 + (TA)n Simple_repeat Simple_repeat 2 65 0 21 71 0 0 chr11 98848602 98848644 -51934909 + AT_rich Low_complexity Low_complexity 1 42 0 4842 109 4 0 chr11 98850330 98851046 -51932507 - L1PA14 LINE L1 -18 6143 5425 317 343 105 21 chr11 98851865 98852008 -51931545 - L2 LINE L2 0 3272 3118 21 0 0 0 chr11 98854156 98854177 -51929376 + AT_rich Low_complexity Low_complexity 1 21 0 226 309 21 43 chr11 98854325 98854419 -51929134 + MIR SINE MIR 101 192 -70 354 286 56 42 chr11 98855560 98855773 -51927780 + HERVL LTR ERVL 1453 1668 -3986 2719 257 9 5 chr11 98855876 98856519 -51927034 + MER82 DNA MER2_type 7 652 -1 272 48 24 0 chr11 98856519 98856561 -51926992 + (CA)n Simple_repeat Simple_repeat 2 44 0 1569 332 58 46 chr11 98856720 98858345 -51925208 + HERVL LTR ERVL 1854 3571 -2193 1185 303 77 66 chr11 98858421 98859328 -51924225 + HERVL LTR ERVL 3703 4595 -1059 587 244 8 0 chr11 98859345 98859464 -51924089 - MER52A LTR ERV1 -1635 120 1 295 389 0 0 chr11 98859481 98859666 -51923887 + HERVL LTR ERVL 5065 5249 -236 900 317 91 13 chr11 98859901 98860365 -51923188 + LTR33 LTR ERVL 17 516 -5 28 91 0 0 chr11 98861178 98861255 -51922298 + AT_rich Low_complexity Low_complexity 1 77 0 196 210 65 32 chr11 98861673 98861735 -51921818 - MIR SINE MIR -101 161 98 * 259 386 16 22 chr11 98861713 98861897 -51921656 + MIR3 SINE MIR 11 193 -15 22 0 0 0 chr11 98862178 98862200 -51921353 + AT_rich Low_complexity Low_complexity 1 22 0 219 309 101 47 chr11 98863836 98863985 -51919568 - L2 LINE L2 -182 3090 2934 1205 174 114 32 chr11 98864419 98864803 -51918750 - MER67C LTR ERV1 -242 272 1 180 230 310 0 chr11 98865330 98865417 -51918136 + L2 LINE L2 3180 3293 -20 401 19 0 0 chr11 98865608 98865660 -51917893 + AluY SINE Alu 1 52 -257 * 601 99 0 0 chr11 98865658 98865739 -51917814 - AluS SINE Alu -226 86 6 219 200 0 36 chr11 98866093 98866148 -51917405 + CT-rich Low_complexity Low_complexity 2 54 0 281 325 75 31 chr11 98867608 98867768 -51915785 + LTR33 LTR ERVL 110 276 -245 1485 219 27 30 chr11 98867850 98868220 -51915333 + MLT1C LTR MaLR 63 431 -36 2425 53 0 7 chr11 98870837 98871140 -51912413 - AluY SINE Alu -10 301 1 680 251 38 127 chr11 98871360 98871787 -51911766 + MLT1-int LTR MaLR 982 1370 -1 788 269 103 27 chr11 98871851 98872182 -51911371 + MLT1E2 LTR MaLR 271 626 0 309 277 109 54 chr11 98872262 98872446 -51911107 + HAL1 LINE L1 2295 2488 -19 * 5918 211 32 10 chr11 98872440 98873381 -51910172 + L1P LINE L1 3833 4818 -1328 4244 67 43 5 chr11 98873381 98873964 -51909589 + LTR14B LTR ERVK 4 608 0 5918 211 32 10 chr11 98873964 98874444 -51909109 + L1P LINE L1 4818 5286 -860 989 141 0 29 chr11 98874444 98874614 -51908939 - AluYa8 SINE Alu -19 291 127 2455 71 0 0 chr11 98874819 98875130 -51908423 - AluY SINE Alu 0 311 1 27 0 0 0 chr11 98875138 98875165 -51908388 + AT_rich Low_complexity Low_complexity 1 27 0 1535 254 57 45 chr11 98875165 98875768 -51907785 + L1MC3 LINE L1 2963 3578 -2568 2412 67 0 0 chr11 98875768 98876068 -51907485 - AluY SINE Alu -11 300 1 1535 254 57 45 chr11 98876068 98876201 -51907352 + L1MC3 LINE L1 3578 3708 -2438 216 135 0 0 chr11 98876297 98876334 -51907219 + (A)n Simple_repeat Simple_repeat 1 37 0 844 264 47 29 chr11 98876391 98876732 -51906821 + MER41E LTR ERV1 166 512 0 533 219 44 22 chr11 98876732 98876869 -51906684 - L1MB1 LINE L1 -87 6081 5942 * 611 229 47 0 chr11 98876854 98877024 -51906529 - L1MA8 LINE L1 0 6291 6114 802 139 39 50 chr11 98877031 98877211 -51906342 + L1MA8 LINE L1 5936 6113 -178 862 181 90 6 chr11 98877258 98877435 -51906118 - MLT1A1 LTR MaLR 0 365 174 323 292 33 16 chr11 98877490 98877614 -51905939 - MSTC LTR MaLR -205 160 28 6291 119 34 3 chr11 98877906 98878890 -51904663 + L1MA2 LINE L1 5254 6272 -32 243 0 0 0 chr11 98878890 98878917 -51904636 + (TA)n Simple_repeat Simple_repeat 2 28 0 6291 119 34 3 chr11 98878917 98878949 -51904604 + L1MA2 LINE L1 6272 6302 -2 263 64 0 43 chr11 98878954 98879001 -51904552 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 9076 219 88 30 chr11 98879018 98879455 -51904098 + L1MC3 LINE L1 3958 4368 -3417 1995 142 6 10 chr11 98879455 98879766 -51903787 + AluSx SINE Alu 1 310 -2 9076 219 88 30 chr11 98879766 98880278 -51903275 + L1MC3 LINE L1 4368 4848 -2937 1883 149 0 7 chr11 98880278 98880580 -51902973 + AluSg1 SINE Alu 1 300 -9 9076 219 88 30 chr11 98880580 98880820 -51902733 + L1MC3 LINE L1 4848 5072 -2713 1752 167 13 7 chr11 98880820 98881119 -51902434 - AluJb SINE Alu -11 301 1 9076 219 88 30 chr11 98881119 98883539 -51900014 + L1MC3 LINE L1 5072 7784 -1 363 374 50 10 chr11 98884196 98884394 -51899159 + MIR SINE MIR 48 253 -9 2027 226 106 6 chr11 98885450 98885941 -51897612 + MER77 LTR ERV1 60 599 -6 356 268 0 12 chr11 98886063 98886145 -51897408 + L2 LINE L2 3233 3313 0 2664 313 36 65 chr11 98886250 98886802 -51896751 + L2 LINE L2 1736 2302 -1011 1988 129 18 52 chr11 98886802 98887190 -51896363 + THE1C LTR MaLR 1 375 0 2664 313 36 65 chr11 98887190 98888262 -51895291 + L2 LINE L2 2302 3310 -3 25 51 0 0 chr11 98888267 98888306 -51895247 + AT_rich Low_complexity Low_complexity 1 39 0 243 360 108 11 chr11 98888380 98888566 -51894987 + MIR SINE MIR 59 262 0 229 333 224 7 chr11 98888687 98888834 -51894719 - MIR3 SINE MIR -9 199 21 258 32 0 0 chr11 98891149 98891180 -51892373 + (T)n Simple_repeat Simple_repeat 1 31 0 981 104 0 8 chr11 98891356 98891490 -51892063 - AluSq/x SINE Alu -180 133 1 5182 127 41 18 chr11 98891490 98891819 -51891734 + L1PA16 LINE L1 5272 5592 -574 2215 111 0 0 chr11 98891819 98892125 -51891428 + AluSg1 SINE Alu 1 306 -3 5182 127 41 18 chr11 98892125 98892670 -51890883 + L1PA16 LINE L1 5592 6166 0 211 214 125 0 chr11 98892995 98893051 -51890502 + L2 LINE L2 3243 3305 -8 27 29 0 0 chr11 98893329 98893363 -51890190 + AT_rich Low_complexity Low_complexity 1 34 0 194 266 16 47 chr11 98894015 98894079 -51889474 + MIR SINE MIR 137 198 -64 22 0 0 0 chr11 98894461 98894483 -51889070 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr11 98894567 98894603 -51888950 + AT_rich Low_complexity Low_complexity 1 36 0 2084 106 0 3 chr11 98894603 98894886 -51888667 + AluY SINE Alu 1 282 -29 183 80 0 0 chr11 98894892 98894917 -51888636 + (TAA)n Simple_repeat Simple_repeat 1 25 0 216 67 0 0 chr11 98895002 98895032 -51888521 + (TG)n Simple_repeat Simple_repeat 2 31 0 267 254 0 0 chr11 98895487 98895546 -51888007 - MLT1K LTR MaLR -15 573 515 1058 240 104 90 chr11 98895547 98896576 -51886977 - L1MEc LINE L1 -3342 2873 1866 279 326 0 0 chr11 98896633 98896762 -51886791 - Alu SINE Alu 0 301 173 24 0 0 0 chr11 98896899 98896923 -51886630 + GC_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr11 98896944 98896965 -51886588 + (A)n Simple_repeat Simple_repeat 1 21 0 4432 121 3 10 chr11 98896965 98897654 -51885899 + L1PA14 LINE L1 5476 6159 -2 240 174 0 22 chr11 98898278 98898324 -51885229 + L1M3c LINE L1 5 49 -6092 181 327 103 28 chr11 98900036 98900143 -51883410 + MIR SINE MIR 40 154 -108 1910 146 96 9 chr11 98900260 98900595 -51882958 - THE1B LTR MaLR 0 364 1 400 323 111 5 chr11 98900666 98900855 -51882698 - MIR SINE MIR -7 255 47 7962 109 36 1 chr11 98901540 98902696 -51880857 - THE1B-int LTR MaLR -383 1197 1 2018 147 48 20 chr11 98902696 98903050 -51880503 - THE1B LTR MaLR 0 364 1 424 268 138 56 chr11 98903369 98903600 -51879953 - MIR SINE MIR 0 262 13 360 279 266 0 chr11 98903616 98903774 -51879779 - MIR SINE MIR -14 248 49 270 279 57 41 chr11 98903884 98904006 -51879547 - MIR SINE MIR -108 154 31 1559 343 29 4 chr11 98904929 98905624 -51877929 + HERV16 LTR ERVL 1838 2556 -2440 228 281 22 45 chr11 98905893 98905982 -51877571 + LTR33 LTR ERVL 429 515 -6 946 238 0 0 chr11 98906163 98906348 -51877205 + MER5A DNA MER1_type 4 188 -1 242 215 138 69 chr11 98906732 98906862 -51876691 + MER103 DNA DNA 9 147 -19 22 0 0 0 chr11 98907192 98907214 -51876339 + AT_rich Low_complexity Low_complexity 1 22 0 215 326 148 22 chr11 98907533 98907668 -51875885 + L2 LINE L2 28 179 -3135 418 278 86 43 chr11 98907731 98907940 -51875613 + L2 LINE L2 3096 3313 0 22 0 0 0 chr11 98909401 98909423 -51874130 + AT_rich Low_complexity Low_complexity 1 22 0 181 182 36 0 chr11 98909494 98909549 -51874004 + (TA)n Simple_repeat Simple_repeat 1 57 0 25 51 0 0 chr11 98909609 98909648 -51873905 + AT_rich Low_complexity Low_complexity 1 39 0 2398 165 55 5 chr11 98909687 98910124 -51873429 - LOR1b LTR ERV1 0 461 3 309 117 11 191 chr11 98910486 98910580 -51872973 - MADE1 DNA Mariner 0 80 4 30 59 0 0 chr11 98910830 98910881 -51872672 + AT_rich Low_complexity Low_complexity 1 51 0 1983 158 25 12 chr11 98911319 98911724 -51871829 - L1MA9 LINE L1 0 6312 5903 1944 249 54 26 chr11 98912088 98912432 -51871121 - L1ME1 LINE L1 -18 6148 5778 921 161 29 10 chr11 98912432 98912637 -51870916 - L1MA8 LINE L1 -5 6286 6078 1944 249 54 26 chr11 98912637 98912906 -51870647 - L1ME1 LINE L1 -388 5778 5518 1684 182 26 3 chr11 98913073 98913419 -51870134 - L1MA6 LINE L1 -10 6290 5937 2504 45 0 32 chr11 98914055 98914368 -51869185 + AluY SINE Alu 1 303 -8 288 0 0 0 chr11 98914860 98914892 -51868661 + (A)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr11 98915030 98915052 -51868501 + GC_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr11 98915093 98915114 -51868439 + (T)n Simple_repeat Simple_repeat 1 21 0 11713 184 11 70 chr11 98915114 98918206 -51865347 - L1P4 LINE L1 -672 5489 2592 592 342 163 14 chr11 98919413 98919843 -51863710 - L2 LINE L2 -13 3300 2807 661 345 26 13 chr11 98919864 98920090 -51863463 - MIR SINE MIR -21 241 13 507 306 27 45 chr11 98920126 98920348 -51863205 - L2 LINE L2 -575 2739 2522 444 298 210 27 chr11 98920480 98920846 -51862707 - L2 LINE L2 -1 3312 2880 461 389 58 22 chr11 98921249 98921614 -51861939 + L2 LINE L2 2339 2716 -598 266 345 68 125 chr11 98921644 98921995 -51861558 + L2 LINE L2 2942 3272 0 404 184 60 18 chr11 98922677 98922845 -51860708 + (TATATG)n Simple_repeat Simple_repeat 3 177 0 24 32 0 0 chr11 98923100 98923131 -51860422 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr11 98923536 98923576 -51859977 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr11 98923704 98923725 -51859828 + AT_rich Low_complexity Low_complexity 1 21 0 409 322 67 59 chr11 98923953 98924917 -51858636 - HAL1 LINE L1 -723 1784 813 774 311 23 5 chr11 98925061 98925280 -51858273 + MIR SINE MIR 12 234 -28 5023 144 32 22 chr11 98926536 98927430 -51856123 - MER4D LTR ERV1 0 903 1 243 157 0 0 chr11 98928594 98928645 -51854908 + (CA)n Simple_repeat Simple_repeat 2 52 0 529 312 30 60 chr11 98929356 98929622 -51853931 - MIR SINE MIR 0 262 5 207 0 0 0 chr11 98930041 98930064 -51853489 + (TA)n Simple_repeat Simple_repeat 2 24 0 194 88 0 29 chr11 98930246 98930280 -51853273 + (TA)n Simple_repeat Simple_repeat 1 33 0 231 141 31 78 chr11 98930289 98930353 -51853200 + L1MC4 LINE L1 6659 6719 -1323 517 333 28 11 chr11 98931191 98931371 -51852182 - MIR SINE MIR -79 183 1 3437 92 12 16 chr11 98931831 98932332 -51851221 - MER9 LTR ERVK -12 499 1 188 203 51 68 chr11 98933530 98933589 -51849964 + MER5A DNA MER1_type 131 188 -1 289 314 19 38 chr11 98933708 98933813 -51849740 + L2 LINE L2 3173 3275 -38 200 365 12 12 chr11 98933919 98934004 -51849549 - MER5B DNA MER1_type -1 177 93 184 171 29 0 chr11 98934537 98934572 -51848981 + L2 LINE L2 3270 3305 -8 893 36 9 0 chr11 98934602 98934714 -51848839 + L1P LINE L1 3796 3908 -2238 4935 99 45 4 chr11 98934714 98935462 -51848091 + L1MA1 LINE L1 5518 6302 0 320 277 38 44 chr11 98936137 98936296 -51847257 + L2 LINE L2 3115 3272 -41 198 292 0 0 chr11 98936327 98936375 -51847178 + L2 LINE L2 3224 3271 -1 22 0 0 0 chr11 98936573 98936595 -51846958 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr11 98937502 98937531 -51846022 + AT_rich Low_complexity Low_complexity 1 29 0 2179 117 10 0 chr11 98937763 98938072 -51845481 - AluSx SINE Alu 0 312 1 1946 135 10 3 chr11 98938169 98938472 -51845081 - AluSx SINE Alu -7 305 1 225 0 0 0 chr11 98938491 98938516 -51845037 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 273 57 0 0 chr11 98938515 98938550 -51845003 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr11 98939273 98939294 -51844259 + AT_rich Low_complexity Low_complexity 1 21 0 243 294 32 16 chr11 98940076 98940202 -51843351 + L1ME2 LINE L1 1380 1507 -4916 44 35 0 0 chr11 98940207 98940265 -51843288 + AT_rich Low_complexity Low_complexity 1 58 0 685 193 0 0 chr11 98940266 98940380 -51843173 - FLAM_C SINE Alu -27 116 3 1287 313 85 9 chr11 98940428 98941204 -51842349 + L1ME2 LINE L1 1775 2609 -4513 292 286 52 40 chr11 98941406 98941654 -51841899 + L1ME2 LINE L1 2874 3124 -3998 1801 238 83 47 chr11 98941690 98941797 -51841756 + L1ME2 LINE L1 6157 6259 -700 186 43 0 0 chr11 98941797 98941820 -51841733 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1801 238 83 47 chr11 98941820 98942473 -51841080 + L1ME2 LINE L1 6259 6944 -15 2103 227 18 45 chr11 98945852 98946360 -51837193 + L1MB3 LINE L1 5439 5890 -299 2131 123 0 3 chr11 98946360 98946660 -51836893 + AluSq SINE Alu 1 299 -14 2103 227 18 45 chr11 98946660 98946935 -51836618 + L1MB3 LINE L1 5890 6171 -18 22 0 0 0 chr11 98947041 98947063 -51836490 + AT_rich Low_complexity Low_complexity 1 22 0 1863 104 4 0 chr11 98947192 98947442 -51836111 + AluSq SINE Alu 44 294 -19 198 313 12 38 chr11 98948560 98948640 -51834913 - L2 LINE L2 -58 3255 3178 695 302 49 9 chr11 98949934 98950159 -51833394 + MIR SINE MIR 1 234 -28 283 339 99 8 chr11 98950841 98950962 -51832591 - MIR SINE MIR -106 156 25 25 51 0 0 chr11 98950998 98951037 -51832516 + AT_rich Low_complexity Low_complexity 1 39 0 502 250 18 0 chr11 98951418 98951530 -51832023 + MER94 DNA DNA 1 114 -20 2340 75 0 0 chr11 98952614 98952908 -51830645 + AluY SINE Alu 8 301 -10 180 0 0 0 chr11 98953049 98953069 -51830484 + (A)n Simple_repeat Simple_repeat 1 20 0 182 170 0 21 chr11 98953445 98953492 -51830061 + GA-rich Low_complexity Low_complexity 2 47 0 733 278 113 43 chr11 98953912 98954282 -51829271 + MLT1I LTR MaLR 1 396 -13 203 0 0 36 chr11 98954459 98954487 -51829066 + (GGAA)n Simple_repeat Simple_repeat 1 27 0 205 152 0 0 chr11 98954487 98954520 -51829033 + GA-rich Low_complexity Low_complexity 1 33 0 612 254 0 0 chr11 98954635 98954757 -51828796 + FLAM_A SINE Alu 1 122 -11 595 206 95 14 chr11 98954757 98955599 -51827954 - L1MC2 LINE L1 -6 7764 6991 342 0 0 0 chr11 98955599 98955637 -51827916 + (TG)n Simple_repeat Simple_repeat 2 39 0 595 206 95 14 chr11 98955637 98956036 -51827517 - L1MC2 LINE L1 -779 6991 6160 223 338 53 45 chr11 98956046 98956179 -51827374 - MIR SINE MIR -108 154 21 190 339 0 34 chr11 98956871 98956930 -51826623 + L3b LINE CR1 1468 1524 -59 261 333 153 0 chr11 98957419 98957569 -51825984 + L2 LINE L2 2883 3055 -217 281 410 35 0 chr11 98958361 98958505 -51825048 - MIR3 SINE MIR -44 164 16 351 73 0 36 chr11 98959389 98959444 -51824109 - L1PA16 LINE L1 -3 6163 6111 1521 163 25 0 chr11 98959445 98959721 -51823832 - L1PA16 LINE L1 -179 5987 5705 1547 269 94 33 chr11 98960245 98960650 -51822903 - L1M4 LINE L1 -841 5305 4926 1783 123 4 4 chr11 98960650 98960901 -51822652 + AluSp SINE Alu 33 305 0 199 0 0 0 chr11 98960901 98960923 -51822630 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1547 269 94 33 chr11 98960923 98961732 -51821821 - L1M4 LINE L1 -1220 4926 4017 1632 255 25 18 chr11 98961748 98962183 -51821370 - MER82 DNA MER2_type -1 652 215 1549 206 0 27 chr11 98962353 98962654 -51820899 + AluJo SINE Alu 1 293 -19 230 263 0 0 chr11 98962684 98962741 -51820812 - MLT1I LTR MaLR 0 409 353 420 20 0 0 chr11 98962747 98962796 -51820757 + (CA)n Simple_repeat Simple_repeat 2 50 0 671 285 43 4 chr11 98962962 98963239 -51820314 - L1M4 LINE L1 -3093 3053 2766 538 289 121 35 chr11 98963704 98964019 -51819534 + L2 LINE L2 1630 1971 -1343 1572 232 67 11 chr11 98964052 98964488 -51819065 + MLT1C LTR MaLR 6 465 -2 1899 317 72 34 chr11 98964493 98965703 -51817850 + L2 LINE L2 2017 3282 -31 34 79 0 0 chr11 98965975 98966051 -51817502 + AT_rich Low_complexity Low_complexity 1 76 0 330 138 0 0 chr11 98966168 98966226 -51817327 + (CA)n Simple_repeat Simple_repeat 1 58 0 462 275 74 7 chr11 98966228 98966377 -51817176 - MIR SINE MIR -70 192 34 473 302 50 70 chr11 98966779 98967037 -51816516 - MIR SINE MIR 0 262 10 2064 123 0 22 chr11 98967549 98967583 -51815970 - AluSq SINE Alu -2 311 278 933 101 31 0 chr11 98967583 98967742 -51815811 + CT-rich Low_complexity Low_complexity 3 166 0 2064 123 0 22 chr11 98967742 98968025 -51815528 - AluSq SINE Alu -35 278 1 21 0 0 0 chr11 98968096 98968117 -51815436 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr11 98968977 98969004 -51814549 + AT_rich Low_complexity Low_complexity 1 27 0 25 65 0 0 chr11 98970713 98970759 -51812794 + AT_rich Low_complexity Low_complexity 1 46 0 258 342 88 18 chr11 98970768 98970882 -51812671 - MIR SINE MIR -121 141 20 284 246 0 0 chr11 98970978 98971043 -51812510 - MLT1H LTR MaLR 0 549 485 616 273 7 0 chr11 98971088 98971238 -51812315 + MER58B DNA MER1_type 173 323 -18 180 0 0 0 chr11 98971992 98972012 -51811541 + (T)n Simple_repeat Simple_repeat 1 20 0 189 0 0 0 chr11 98974828 98974849 -51808704 + (T)n Simple_repeat Simple_repeat 1 21 0 27 0 0 0 chr11 98976305 98976332 -51807221 + AT_rich Low_complexity Low_complexity 1 27 0 918 209 68 62 chr11 98976705 98976867 -51806686 - MER33 DNA MER1_type -2262 323 163 1987 159 30 0 chr11 98976867 98977200 -51806353 - MER7A DNA MER2_type -2 344 4 918 209 68 62 chr11 98977200 98977358 -51806195 - MER33 DNA MER1_type -2422 163 1 276 258 32 0 chr11 98977456 98977518 -51806035 + polypyrimidine Low_complexity Low_complexity 2 65 0 225 363 0 12 chr11 98978105 98978185 -51805368 - L2 LINE L2 0 3272 3194 22 56 0 0 chr11 98978294 98978330 -51805223 + AT_rich Low_complexity Low_complexity 1 36 0 1308 320 73 23 chr11 98979003 98979755 -51803798 + L1MEc LINE L1 14 803 -5593 15044 209 56 14 chr11 98979966 98981522 -51802031 + L1PA16 LINE L1 1 1489 -5380 2249 106 6 3 chr11 98981522 98981834 -51801719 + AluSp SINE Alu 1 313 0 15044 209 56 14 chr11 98981834 98986881 -51796672 + L1PA16 LINE L1 1489 6860 -9 895 280 30 59 chr11 98986898 98987491 -51796062 + L1MEc LINE L1 1061 1636 -4760 999 199 140 39 chr11 98987494 98987850 -51795703 - L1MDa LINE L1 -4316 2625 2234 807 278 15 63 chr11 98987854 98988311 -51795242 - L1M4 LINE L1 -3040 3106 2672 256 276 55 55 chr11 98988448 98988575 -51794978 - L1MDa LINE L1 -5956 467 341 184 361 72 21 chr11 98988812 98988909 -51794644 + L2 LINE L2 3134 3235 -37 1945 156 0 7 chr11 98989170 98989465 -51794088 + AluSg SINE Alu 1 293 -17 243 0 0 0 chr11 98990250 98990277 -51793276 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 778 76 8 8 chr11 98990314 98990433 -51793120 + L1PA13 LINE L1 6045 6163 0 22 0 0 0 chr11 98991061 98991083 -51792470 + AT_rich Low_complexity Low_complexity 1 22 0 32 43 0 0 chr11 98991296 98991342 -51792211 + AT_rich Low_complexity Low_complexity 1 46 0 25 51 0 0 chr11 98991535 98991574 -51791979 + AT_rich Low_complexity Low_complexity 1 39 0 1517 275 52 11 chr11 98992007 98992465 -51791088 + MLT1D LTR MaLR 21 497 -8 428 341 52 20 chr11 98992913 98993118 -51790435 + MER20B DNA MER1_type 7 219 0 318 232 0 14 chr11 98993611 98993680 -51789873 + MER3 DNA MER1_type 2 69 -140 2680 169 14 14 chr11 98993738 98994248 -51789305 - L1PA15 LINE L1 -4 6161 5652 912 117 0 0 chr11 98994248 98994368 -51789185 - AluSg/x SINE Alu -18 292 173 2968 170 12 2 chr11 98994368 98995311 -51788242 - L1PA15 LINE L1 -495 5670 4716 2857 249 5 12 chr11 98995322 98995690 -51787863 - L1PA15 LINE L1 -2477 3669 3300 1756 179 98 20 chr11 98995690 98996087 -51787466 - MSTA LTR MaLR 0 428 1 2857 249 5 12 chr11 98996087 98996494 -51787059 - L1PA15 LINE L1 -2846 3300 2899 2667 207 12 7 chr11 98996981 98997566 -51785987 - L1MC3 LINE L1 -19 7766 7179 260 182 45 0 chr11 98999218 98999284 -51784269 + GA-rich Low_complexity Low_complexity 3 71 0 207 0 0 0 chr11 98999284 98999307 -51784246 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 42372 52 3 0 chr11 99000089 99006225 -51777328 - L1PA4 LINE L1 0 6155 4 198 291 66 82 chr11 99006265 99006447 -51777106 - MIR SINE MIR -50 212 34 23 92 0 0 chr11 99007943 99008008 -51775545 + AT_rich Low_complexity Low_complexity 1 65 0 263 292 19 17 chr11 99009344 99009498 -51774055 + MIR SINE MIR 43 260 -2 1926 107 13 63 chr11 99010425 99010743 -51772810 + AluSq SINE Alu 1 302 -11 22 80 0 0 chr11 99011788 99011838 -51771715 + AT_rich Low_complexity Low_complexity 1 50 0 6825 56 17 0 chr11 99013614 99015112 -51768441 + L1PA5 LINE L1 4631 6149 -5 1911 121 46 7 chr11 99015112 99015394 -51768159 + AluSg SINE Alu 1 293 -17 23 0 0 0 chr11 99016006 99016029 -51767524 + AT_rich Low_complexity Low_complexity 1 23 0 252 0 0 0 chr11 99016087 99016115 -51767438 + (A)n Simple_repeat Simple_repeat 1 28 0 3226 174 38 13 chr11 99016603 99017230 -51766323 + MER73 LTR ERVL 2 644 0 292 372 101 0 chr11 99017984 99018113 -51765440 + L2 LINE L2 3122 3263 -9 22 0 0 0 chr11 99018613 99018635 -51764918 + AT_rich Low_complexity Low_complexity 1 22 0 245 372 50 54 chr11 99018715 99018973 -51764580 - L3 LINE CR1 -2 1575 1319 1005 293 49 28 chr11 99019467 99020000 -51763553 + L1MDa LINE L1 1403 1946 -4594 293 262 56 9 chr11 99020017 99020124 -51763429 + L1MDa LINE L1 2090 2201 -4339 385 224 103 55 chr11 99020232 99020397 -51763156 + L1MDa LINE L1 2403 2575 -3965 5300 270 99 20 chr11 99020433 99023188 -51760365 + L1MDa LINE L1 2614 5587 -953 2281 113 3 0 chr11 99023205 99023549 -51760004 + AluSx SINE Alu 1 345 0 45 45 0 0 chr11 99023656 99023722 -51759831 + GC_rich Low_complexity Low_complexity 1 66 0 216 0 0 0 chr11 99023736 99023760 -51759793 + (A)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr11 99023760 99023783 -51759770 + (TA)n Simple_repeat Simple_repeat 1 23 0 821 218 41 0 chr11 99024038 99024208 -51759345 + MLT2B1 LTR ERVL 1 177 -343 372 204 11 11 chr11 99024377 99024465 -51759088 + L1MC5 LINE L1 7073 7160 -801 649 235 101 42 chr11 99024671 99025007 -51758546 + L1MC5 LINE L1 7474 7829 -132 697 301 132 13 chr11 99025137 99025680 -51757873 + L2 LINE L2 2476 3075 -238 312 353 26 42 chr11 99025927 99026117 -51757436 - MIR SINE MIR -56 206 20 6728 121 18 16 chr11 99027263 99028566 -51754987 + L1MA2 LINE L1 5005 6303 -1 492 194 0 108 chr11 99028626 99028792 -51754761 - FLAM_A SINE Alu 0 152 1 195 306 90 28 chr11 99029018 99029162 -51754391 + L3 LINE CR1 739 891 -686 306 308 171 19 chr11 99029194 99029405 -51754148 - MIR SINE MIR -13 249 7 184 304 0 0 chr11 99029421 99029477 -51754076 + L3 LINE CR1 950 1005 -572 2455 94 41 0 chr11 99030637 99030978 -51752575 - THE1A LTR MaLR 0 355 1 6228 104 1 1 chr11 99030995 99031856 -51751697 - THE1A-int LTR MaLR -719 861 1 2521 103 6 0 chr11 99031859 99032210 -51751343 - THE1A LTR MaLR -2 353 1 1198 288 68 11 chr11 99032740 99033198 -51750355 - L1ME1 LINE L1 -1 6960 6477 971 220 45 0 chr11 99033198 99033398 -51750155 - MER20 DNA MER1_type 0 219 11 677 253 29 105 chr11 99033400 99033938 -51749615 - L1ME1 LINE L1 -482 6479 5983 180 0 0 0 chr11 99033977 99033997 -51749556 + (G)n Simple_repeat Simple_repeat 1 20 0 513 216 9 0 chr11 99034142 99034253 -51749300 - AluSg/x SINE Alu -7 303 192 681 283 96 8 chr11 99034268 99034664 -51748889 - L1ME1 LINE L1 -4917 2205 1775 685 193 0 0 chr11 99034712 99034826 -51748727 + FLAM_C SINE Alu 3 116 -27 44 35 0 0 chr11 99034827 99034885 -51748668 + AT_rich Low_complexity Low_complexity 1 58 0 243 294 32 16 chr11 99034890 99035016 -51748537 - L1ME1 LINE L1 -4916 1507 1380 21 0 0 0 chr11 99035798 99035819 -51747734 + AT_rich Low_complexity Low_complexity 1 21 0 273 57 0 0 chr11 99036542 99036577 -51746976 + (CA)n Simple_repeat Simple_repeat 2 36 0 225 0 0 0 chr11 99036576 99036601 -51746952 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 1946 135 10 3 chr11 99036620 99036923 -51746630 + AluSx SINE Alu 1 305 -7 2179 117 10 0 chr11 99037020 99037329 -51746224 + AluSx SINE Alu 1 312 0 22 35 0 0 chr11 99037561 99037590 -51745963 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr11 99038498 99038524 -51745029 + AT_rich Low_complexity Low_complexity 1 26 0 198 292 0 0 chr11 99038718 99038766 -51744787 - L2 LINE L2 -1 3271 3224 320 277 38 44 chr11 99038797 99038956 -51744597 - L2 LINE L2 -41 3272 3115 892 67 15 44 chr11 99039603 99039631 -51743922 - L1P LINE L1 -2220 3926 3899 4935 99 45 4 chr11 99039631 99040385 -51743168 - L1MA1 LINE L1 0 6302 5518 892 67 15 44 chr11 99040385 99040491 -51743062 - L1P LINE L1 -2247 3899 3796 184 171 29 0 chr11 99040521 99040556 -51742997 - L2 LINE L2 -8 3305 3270 200 365 12 12 chr11 99041089 99041174 -51742379 + MER5B DNA MER1_type 93 177 -1 289 314 19 38 chr11 99041280 99041385 -51742168 - L2 LINE L2 -38 3275 3173 188 203 51 68 chr11 99041504 99041563 -51741990 - MER5A DNA MER1_type -1 188 131 3416 94 12 16 chr11 99042761 99043262 -51740291 + MER9 LTR ERVK 1 499 -12 502 339 28 11 chr11 99043722 99043902 -51739651 + MIR SINE MIR 1 183 -79 233 156 31 78 chr11 99044740 99044804 -51738749 - L1MC4 LINE L1 -1323 6719 6659 194 88 0 29 chr11 99044813 99044847 -51738706 + (TA)n Simple_repeat Simple_repeat 2 34 0 523 316 31 55 chr11 99045465 99045721 -51737832 + MIR SINE MIR 13 262 0 276 137 0 0 chr11 99046432 99046483 -51737070 + (TG)n Simple_repeat Simple_repeat 2 52 0 4949 150 32 22 chr11 99047645 99048539 -51735014 + MER4D LTR ERV1 1 903 0 774 311 23 5 chr11 99049794 99050013 -51733540 - MIR SINE MIR -28 234 12 421 324 65 57 chr11 99050157 99051121 -51732432 + HAL1 LINE L1 813 1784 -723 26 50 0 0 chr11 99051501 99051541 -51732012 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr11 99051946 99051977 -51731576 + AT_rich Low_complexity Low_complexity 1 31 0 225 299 41 21 chr11 99052213 99052310 -51731243 + L1MC4 LINE L1 6605 6703 -1339 244 348 68 125 chr11 99053051 99053402 -51730151 - L2 LINE L2 0 3272 2942 461 389 58 22 chr11 99053432 99053797 -51729756 - L2 LINE L2 -598 2716 2339 461 295 210 27 chr11 99054200 99054566 -51728987 + L2 LINE L2 2880 3312 -1 505 302 27 45 chr11 99054698 99054920 -51728633 + L2 LINE L2 2522 2739 -575 661 345 26 13 chr11 99054956 99055182 -51728371 + MIR SINE MIR 13 241 -21 605 340 163 14 chr11 99055203 99055633 -51727920 + L2 LINE L2 2807 3300 -13 11615 185 12 71 chr11 99056839 99059931 -51723622 + L1P4 LINE L1 2592 5489 -672 21 0 0 0 chr11 99059931 99059952 -51723601 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr11 99060204 99060226 -51723327 + (A)n Simple_repeat Simple_repeat 1 22 0 2297 104 0 3 chr11 99060226 99060533 -51723020 - AluSg SINE Alu -4 306 1 1872 173 0 0 chr11 99060641 99060948 -51722605 - AluSx SINE Alu -5 307 1 27 62 0 0 chr11 99060956 99061004 -51722549 + AT_rich Low_complexity Low_complexity 1 48 0 836 232 35 81 chr11 99061025 99061310 -51722243 - MLT1A1 LTR MaLR 0 365 94 24 53 0 0 chr11 99061362 99061400 -51722153 + AT_rich Low_complexity Low_complexity 1 38 0 274 222 62 49 chr11 99061497 99061578 -51721975 + L2 LINE L2 1893 1974 -1340 1029 337 103 38 chr11 99061637 99062034 -51721519 - L2 LINE L2 -1697 1617 1247 2310 146 72 66 chr11 99062034 99062521 -51721032 - LTR2B LTR ERV1 0 490 1 1029 337 103 38 chr11 99062521 99062891 -51720662 - L2 LINE L2 -2067 1247 800 1463 169 0 0 chr11 99062936 99063202 -51720351 - L1 LINE L1 -908 5238 4973 294 179 0 0 chr11 99063203 99063259 -51720294 + L1MA1 LINE L1 6247 6302 0 371 260 115 30 chr11 99063342 99063542 -51720011 + MER112 DNA MER1_type 44 260 0 285 197 0 0 chr11 99063793 99063854 -51719699 + (TG)n Simple_repeat Simple_repeat 2 62 0 225 0 0 0 chr11 99064703 99064728 -51718825 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 24 0 0 0 chr11 99064928 99064952 -51718601 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr11 99065082 99065103 -51718450 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chr11 99065473 99065502 -51718051 + (TAA)n Simple_repeat Simple_repeat 2 30 0 369 218 52 129 chr11 99065512 99065705 -51717848 - MIR SINE MIR -9 253 76 294 73 0 0 chr11 99066425 99066466 -51717087 + (CA)n Simple_repeat Simple_repeat 2 42 0 2375 220 33 4 chr11 99066877 99067428 -51716125 - L1MC3 LINE L1 -1795 5990 5424 243 241 99 62 chr11 99067442 99067604 -51715949 - L1ME LINE L1 -305 5816 5649 661 216 32 22 chr11 99067629 99067814 -51715739 - L1MC3 LINE L1 -864 5282 5096 513 281 100 50 chr11 99067819 99068118 -51715435 - L1MC/D LINE L1 -2028 5780 5467 31 44 0 0 chr11 99068399 99068444 -51715109 + AT_rich Low_complexity Low_complexity 1 45 0 188 324 54 0 chr11 99068854 99068928 -51714625 - MIR SINE MIR -13 249 172 7316 204 20 10 chr11 99069051 99071357 -51712196 + L1PA13 LINE L1 1320 3668 -3129 10162 196 26 6 chr11 99071371 99074354 -51709199 + L1PA13 LINE L1 3786 6814 0 426 234 91 91 chr11 99075214 99075466 -51708087 - MLT1K LTR MaLR -123 465 214 2796 22 0 0 chr11 99075713 99076031 -51707522 - AluYb8 SINE Alu 0 318 1 869 238 27 5 chr11 99076208 99076393 -51707160 - MER58A DNA MER1_type -34 190 2 495 308 80 26 chr11 99076463 99076849 -51706704 + MLT1I LTR MaLR 1 407 -2 427 210 25 0 chr11 99077065 99077146 -51706407 - L2 LINE L2 -2 3311 3229 215 239 0 0 chr11 99077336 99077382 -51706171 + CT-rich Low_complexity Low_complexity 3 48 0 238 288 76 81 chr11 99077405 99077641 -51705912 - MLT1K LTR MaLR -158 430 196 1531 116 0 17 chr11 99079172 99079404 -51704149 + AluSg/x SINE Alu 78 305 -7 204 391 70 9 chr11 99079781 99079896 -51703657 + MIR3 SINE MIR 42 163 -45 342 324 66 37 chr11 99080090 99080334 -51703219 + L1MEc LINE L1 51 301 -6095 587 207 99 29 chr11 99080361 99080659 -51702894 - L1 LINE L1 -2719 3427 3112 1083 97 0 13 chr11 99080664 99080818 -51702735 - AluSg/x SINE Alu -5 307 156 1932 245 126 16 chr11 99080818 99081751 -51701802 - L1MCb LINE L1 -4862 1183 578 21 36 0 0 chr11 99081755 99081783 -51701770 + AT_rich Low_complexity Low_complexity 1 28 0 4187 178 53 18 chr11 99081789 99082058 -51701495 - L1MB3 LINE L1 -8 6175 5917 300 27 0 0 chr11 99082058 99082095 -51701458 + (TG)n Simple_repeat Simple_repeat 2 38 0 4187 178 53 18 chr11 99082095 99082797 -51700756 - L1MB3 LINE L1 -266 5917 5173 643 246 0 0 chr11 99082804 99082938 -51700615 - L1MCb LINE L1 -5358 687 554 2306 111 25 6 chr11 99082949 99083308 -51700245 - THE1C LTR MaLR -9 366 1 397 51 0 17 chr11 99083308 99083367 -51700186 - THE1C-int LTR MaLR 0 1580 1523 1016 219 18 14 chr11 99083376 99083641 -51699912 + L1MB5 LINE L1 5915 6180 0 2092 128 3 0 chr11 99083689 99083994 -51699559 - AluSx SINE Alu -6 306 1 507 60 0 0 chr11 99084756 99084823 -51698730 + (TAG)n Simple_repeat Simple_repeat 1 67 0 7247 40 1 0 chr11 99085321 99086962 -51696591 - L1PA5 LINE L1 -2 6152 4499 3023 30 3 3 chr11 99086963 99087335 -51696218 + L1PA5 LINE L1 4134 4505 -1641 694 185 0 8 chr11 99089099 99089253 -51694300 - FLAM_C SINE Alu 0 153 1 202 268 18 0 chr11 99089488 99089544 -51694009 + (TA)n Simple_repeat Simple_repeat 2 58 0 28 0 0 0 chr11 99090155 99090183 -51693370 + AT_rich Low_complexity Low_complexity 1 28 0 1913 111 52 0 chr11 99090819 99091107 -51692446 + AluSg1 SINE Alu 1 303 -6 263 224 0 0 chr11 99091171 99091229 -51692324 + L1ME4a LINE L1 6061 6118 -3 1623 181 44 41 chr11 99091948 99092290 -51691263 - MER2 DNA MER2_type 0 344 2 357 272 88 32 chr11 99092596 99092721 -51690832 + MER3 DNA MER1_type 1 132 -77 264 77 0 0 chr11 99093358 99093397 -51690156 + (TC)n Simple_repeat Simple_repeat 2 40 0 396 0 0 0 chr11 99093397 99093441 -51690112 + (CA)n Simple_repeat Simple_repeat 1 44 0 1505 162 66 57 chr11 99093495 99093829 -51689724 + MER1B DNA MER1_type 1 337 0 21 36 0 0 chr11 99094751 99094779 -51688774 + AT_rich Low_complexity Low_complexity 1 28 0 248 0 31 0 chr11 99096254 99096286 -51687267 + (TAA)n Simple_repeat Simple_repeat 2 34 0 262 178 0 27 chr11 99096493 99096566 -51686987 + CT-rich Low_complexity Low_complexity 2 72 0 2239 205 16 0 chr11 99097436 99097880 -51685673 - L1P LINE L1 -3142 3004 2554 7087 167 16 4 chr11 99097880 99100064 -51683489 + L1PA11 LINE L1 3979 6166 -8 202 229 0 0 chr11 99100624 99100672 -51682881 + A-rich Low_complexity Low_complexity 2 49 0 186 309 73 15 chr11 99100686 99100754 -51682799 + MIR SINE MIR 32 103 -105 226 274 85 91 chr11 99100980 99101283 -51682270 + L2 LINE L2 2721 3118 -195 514 265 113 11 chr11 99101294 99101479 -51682074 + MIR SINE MIR 32 235 -27 352 273 116 40 chr11 99101487 99101685 -51681868 + L2 LINE L2 3097 3309 -4 334 277 25 42 chr11 99103681 99103800 -51679753 - MIR SINE MIR -89 173 57 4028 90 21 0 chr11 99103802 99104377 -51679176 + L1PA13 LINE L1 5572 6158 -5 291 213 0 0 chr11 99104683 99104758 -51678795 + (TA)n Simple_repeat Simple_repeat 1 75 0 301 242 16 0 chr11 99104858 99104986 -51678567 + (TA)n Simple_repeat Simple_repeat 2 131 0 39 60 0 0 chr11 99105012 99105079 -51678474 + AT_rich Low_complexity Low_complexity 1 67 0 537 198 9 0 chr11 99105081 99105187 -51678366 - L1MD1 LINE L1 -16 6462 6356 1201 265 41 64 chr11 99105246 99105732 -51677821 - MLT1D LTR MaLR -10 495 21 3181 211 57 28 chr11 99105769 99106486 -51677067 - L1MD1 LINE L1 -201 6277 5520 180 77 0 0 chr11 99106486 99106512 -51677041 + (TTA)n Simple_repeat Simple_repeat 2 27 0 3181 211 57 28 chr11 99106512 99107055 -51676498 - L1MD1 LINE L1 -958 5520 4994 974 237 28 16 chr11 99107050 99107371 -51676182 - L1MD1 LINE L1 -2759 3623 3299 * 762 280 125 13 chr11 99107416 99107727 -51675826 + LTR16A LTR ERVL 99 444 -6 2312 94 3 0 chr11 99107785 99108094 -51675459 - AluSg SINE Alu 0 310 1 416 337 72 58 chr11 99108517 99109110 -51674443 - L1MD1 LINE L1 -4579 1984 1213 2388 66 0 3 chr11 99109110 99109413 -51674140 - AluY SINE Alu -9 302 1 416 337 72 58 chr11 99109413 99109670 -51673883 - L1MD1 LINE L1 -5350 1213 961 3347 100 2 0 chr11 99109683 99110135 -51673418 - MLT2A2 LTR ERVL 0 453 1 1146 90 17 6 chr11 99110135 99110312 -51673241 - HERVL-A2 LTR ERVL 0 5654 5476 29 0 0 0 chr11 99110906 99110935 -51672618 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr11 99111195 99111222 -51672331 + AT_rich Low_complexity Low_complexity 1 27 0 193 289 154 20 chr11 99113293 99113442 -51670111 + L2 LINE L2 3140 3308 -5 1764 98 0 8 chr11 99113638 99113894 -51669659 - L1PA6 LINE L1 -1 6153 5900 5369 85 4 46 chr11 99114341 99115139 -51668414 - L1PA8A LINE L1 -27 6104 5341 29 0 0 0 chr11 99116121 99116150 -51667403 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chr11 99116171 99116222 -51667331 + AT_rich Low_complexity Low_complexity 1 51 0 310 291 52 64 chr11 99116385 99116557 -51666996 - L2 LINE L2 -10 3303 3134 195 42 0 0 chr11 99117663 99117687 -51665866 + (TC)n Simple_repeat Simple_repeat 1 24 0 285 29 0 0 chr11 99117969 99117986 -51665567 + (TG)n Simple_repeat Simple_repeat 1 51 0 285 29 0 0 chr11 99117986 99118020 -51665533 + (TG)n Simple_repeat Simple_repeat 2 35 0 244 291 0 0 chr11 99118204 99118283 -51665270 + T-rich Low_complexity Low_complexity 1 79 0 188 333 153 26 chr11 99119222 99119411 -51664142 + MIR SINE MIR 14 226 -36 432 346 154 11 chr11 99120673 99120933 -51662620 - L2 LINE L2 0 3272 2976 239 367 28 33 chr11 99121259 99121439 -51662114 - L2 LINE L2 -460 2854 2676 450 0 0 0 chr11 99121730 99121780 -51661773 + (TG)n Simple_repeat Simple_repeat 2 51 0 30 27 0 0 chr11 99122213 99122250 -51661303 + AT_rich Low_complexity Low_complexity 1 37 0 183 265 20 20 chr11 99122405 99122454 -51661099 + L3 LINE CR1 1526 1574 -3 23 0 0 0 chr11 99123716 99123739 -51659814 + AT_rich Low_complexity Low_complexity 1 23 0 1783 183 45 20 chr11 99123787 99124142 -51659411 + THE1B LTR MaLR 1 364 0 11405 107 1 0 chr11 99124142 99125721 -51657832 + THE1B-int LTR MaLR 1 1580 0 2142 124 48 20 chr11 99125721 99126075 -51657478 + THE1B LTR MaLR 1 364 0 30 59 0 0 chr11 99126330 99126381 -51657172 + AT_rich Low_complexity Low_complexity 1 51 0 281 330 89 22 chr11 99126993 99127172 -51656381 + MIR SINE MIR 48 238 -24 337 286 128 8 chr11 99128380 99128513 -51655040 - MIR SINE MIR -15 247 99 5362 133 75 5 chr11 99129598 99130709 -51652844 - Tigger1 DNA MER2_type -3 2415 1171 1552 213 29 0 chr11 99130681 99130991 -51652562 - Tigger1 DNA MER2_type -2076 342 24 * 197 340 33 53 chr11 99131399 99131549 -51652004 + MIR SINE MIR 29 175 -87 221 267 0 17 chr11 99131549 99131609 -51651944 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 1792 192 30 0 chr11 99131609 99131947 -51651606 + MER7A DNA MER2_type 1 346 0 403 261 71 62 chr11 99131958 99132169 -51651384 - LTR33 LTR ERVL -4 517 305 366 253 80 19 chr11 99132312 99132474 -51651079 - Charlie1a DNA MER1_type 0 1455 1284 703 320 25 0 chr11 99132481 99132681 -51650872 - MER58A DNA MER1_type -2 222 18 3681 225 97 52 chr11 99132718 99133929 -51649624 - Charlie1a DNA MER1_type -167 1288 24 28 61 0 0 chr11 99134715 99134764 -51648789 + AT_rich Low_complexity Low_complexity 1 49 0 43262 43 3 1 chr11 99134824 99140956 -51642597 - L1PA3 LINE L1 -3 6152 12 1001 227 143 106 chr11 99141657 99141918 -51641635 + MLT2B1 LTR ERVL 1 251 -269 2432 121 13 8 chr11 99141918 99142291 -51641262 + THE1C LTR MaLR 1 375 0 9456 144 37 3 chr11 99142291 99143820 -51639733 + THE1C-int LTR MaLR 1 1580 0 2446 119 16 5 chr11 99143820 99144191 -51639362 + THE1C LTR MaLR 1 375 0 1001 227 143 106 chr11 99144191 99144425 -51639128 + MLT2B1 LTR ERVL 250 516 -4 276 235 51 0 chr11 99144630 99144728 -51638825 + (TA)n Simple_repeat Simple_repeat 2 104 0 225 0 0 0 chr11 99144736 99144761 -51638792 + (CA)n Simple_repeat Simple_repeat 2 26 0 192 152 0 0 chr11 99146632 99146665 -51636888 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 333 240 62 31 chr11 99146806 99146902 -51636651 + L2 LINE L2 3213 3311 -2 2143 207 30 5 chr11 99147362 99147792 -51635761 - MER74C LTR ERVL 0 460 20 198 0 0 0 chr11 99151277 99151299 -51632254 + (TTG)n Simple_repeat Simple_repeat 3 24 0 929 275 31 57 chr11 99151300 99151686 -51631867 + MLT2C1 LTR ERVL 22 397 0 1339 351 51 38 chr11 99152179 99152231 -51631322 - MERVL LTR ERVL -1129 4525 4475 2224 151 45 21 chr11 99152231 99152649 -51630904 + MSTA LTR MaLR 1 428 0 1339 351 51 38 chr11 99152649 99154292 -51629261 - MERVL LTR ERVL -1179 4475 2762 916 364 49 3 chr11 99154282 99154669 -51628884 - MERVL LTR ERVL -3453 1543 1139 * 425 241 76 104 chr11 99154759 99155008 -51628545 - MERVL LTR ERVL -3994 1002 761 393 276 42 78 chr11 99155067 99155284 -51628269 - MER63A DNA MER1_type -1 209 1 863 263 24 57 chr11 99155881 99156178 -51627375 - LTR16A LTR ERVL 0 450 164 2218 96 0 0 chr11 99157331 99157624 -51625929 - AluSx SINE Alu -19 293 1 38 0 0 0 chr11 99158300 99158338 -51625215 + AT_rich Low_complexity Low_complexity 1 38 0 326 323 76 13 chr11 99159179 99159337 -51624216 - MIR SINE MIR -1 261 94 1662 148 6 22 chr11 99159602 99159919 -51623634 - L1MA4A LINE L1 -4 6299 5988 321 24 0 0 chr11 99160586 99160627 -51622926 - L1PA13 LINE L1 -6 6157 6117 9919 214 60 24 chr11 99160646 99163941 -51619612 - L1MA4 LINE L1 -1 6481 3306 1613 148 87 36 chr11 99163941 99164298 -51619255 + THE1C LTR MaLR 1 375 0 9919 214 60 24 chr11 99164298 99166521 -51617032 - L1MA4 LINE L1 -3176 3306 681 537 55 0 0 chr11 99166521 99166594 -51616959 + (TCTCC)n Simple_repeat Simple_repeat 5 77 0 9919 214 60 24 chr11 99166594 99167053 -51616500 - L1MA4 LINE L1 -5801 681 240 31 0 0 0 chr11 99167085 99167116 -51616437 + AT_rich Low_complexity Low_complexity 1 31 0 1912 178 61 31 chr11 99167730 99168266 -51615287 + MLT2A2 LTR ERVL 1 554 0 317 289 54 39 chr11 99168411 99168615 -51614938 + MER114 LTR ERV 23 229 -419 388 256 81 0 chr11 99168668 99168828 -51614725 + MER114 LTR ERV 330 502 -146 5517 207 21 21 chr11 99168946 99170612 -51612941 + L1MC1 LINE L1 4661 6327 -6 22 0 0 0 chr11 99171441 99171463 -51612090 + AT_rich Low_complexity Low_complexity 1 22 0 3448 128 18 19 chr11 99171552 99172135 -51611418 - LTR10C LTR ERV1 0 529 1 2020 110 40 0 chr11 99172314 99172613 -51610940 - AluY SINE Alu 0 311 1 26 0 0 0 chr11 99173000 99173026 -51610527 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr11 99173294 99173327 -51610226 + AT_rich Low_complexity Low_complexity 1 33 0 344 181 0 0 chr11 99173485 99173557 -51609996 - L1PA6 LINE L1 -2 6152 6081 2122 124 0 31 chr11 99173643 99173965 -51609588 - AluSx SINE Alu 0 312 1 26 0 0 0 chr11 99174046 99174072 -51609481 + AT_rich Low_complexity Low_complexity 1 26 0 23 86 0 0 chr11 99174688 99174746 -51608807 + AT_rich Low_complexity Low_complexity 1 58 0 355 305 30 23 chr11 99174797 99174928 -51608625 - MLT1I LTR MaLR -33 376 245 181 333 18 0 chr11 99175889 99175946 -51607607 - L2 LINE L2 0 3313 3256 5279 156 37 26 chr11 99176124 99177095 -51606458 - L1PA13 LINE L1 -4 6159 5200 351 0 0 0 chr11 99177095 99177134 -51606419 + (TGG)n Simple_repeat Simple_repeat 3 41 0 5279 156 37 26 chr11 99177134 99177227 -51606326 - L1PA13 LINE L1 -963 5200 5109 2299 57 40 3 chr11 99177227 99177525 -51606028 - AluY SINE Alu -2 309 1 5279 156 37 26 chr11 99177525 99178433 -51605120 - L1PA13 LINE L1 -1054 5109 4150 404 339 201 36 chr11 99178434 99179181 -51604372 + L2 LINE L2 1869 2738 -576 658 186 73 0 chr11 99179483 99179607 -51603946 - FLAM_A SINE Alu 0 133 1 210 328 31 0 chr11 99180077 99180141 -51603412 - MER5A DNA MER1_type -85 104 39 1534 201 7 0 chr11 99180337 99180626 -51602927 + AluJo SINE Alu 1 291 -21 281 218 0 0 chr11 99181379 99181434 -51602119 + L2 LINE L2 3258 3312 -1 235 345 68 14 chr11 99183025 99183173 -51600380 + L3 LINE CR1 1357 1512 -65 330 289 11 0 chr11 99183197 99183287 -51600266 + MIR SINE MIR 165 255 -7 231 229 84 24 chr11 99183387 99183470 -51600083 + HsTC2 DNA Tc2 1810 1897 -1 330 327 53 0 chr11 99184376 99184489 -51599064 + MLT1J LTR MaLR 79 197 -314 279 0 0 0 chr11 99184901 99184932 -51598621 + (T)n Simple_repeat Simple_repeat 1 31 0 180 0 0 0 chr11 99184937 99184957 -51598596 + (G)n Simple_repeat Simple_repeat 1 20 0 306 0 0 0 chr11 99185162 99185196 -51598357 + (T)n Simple_repeat Simple_repeat 1 34 0 210 147 0 0 chr11 99185377 99185411 -51598142 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 203 122 0 24 chr11 99185411 99185452 -51598101 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 330 341 65 41 chr11 99185987 99186157 -51597396 - MIR3 SINE MIR -24 184 11 309 167 0 0 chr11 99187200 99187254 -51596299 + MER53 DNA DNA 1 54 -135 421 229 0 0 chr11 99187319 99187424 -51596129 + MER53 DNA DNA 69 173 -16 22 0 0 0 chr11 99187604 99187626 -51595927 + AT_rich Low_complexity Low_complexity 1 22 0 211 298 18 0 chr11 99188233 99188290 -51595263 - L2 LINE L2 0 3313 3256 295 286 33 11 chr11 99188299 99188390 -51595163 + L2 LINE L2 3189 3281 -32 372 305 8 23 chr11 99189705 99189833 -51593720 + L2 LINE L2 3187 3312 -1 361 313 122 0 chr11 99190104 99190251 -51593302 - MIR SINE MIR -37 225 61 21 0 0 0 chr11 99190964 99190985 -51592568 + AT_rich Low_complexity Low_complexity 1 21 0 578 344 120 17 chr11 99191398 99191973 -51591580 - L1M4 LINE L1 -902 5244 4611 2153 233 57 18 chr11 99192336 99192938 -51590615 - L1MB7 LINE L1 -7 6177 5553 7209 142 28 129 chr11 99192944 99194597 -51588956 + THE1C-int LTR MaLR 95 1580 0 2010 157 24 29 chr11 99194597 99194974 -51588579 + THE1C LTR MaLR 1 375 0 736 228 37 0 chr11 99194974 99195136 -51588417 - L1MB7 LINE L1 -626 5558 5391 4446 273 62 28 chr11 99195136 99197314 -51586239 - L1M4c LINE L1 -4564 2393 89 34 24 0 0 chr11 99197321 99197362 -51586191 + AT_rich Low_complexity Low_complexity 1 41 0 278 222 161 0 chr11 99197404 99197485 -51586068 - L1M4c LINE L1 -6761 98 5 3252 96 4 2 chr11 99198021 99198488 -51585065 - L1PA12 LINE L1 0 6168 5701 980 56 0 0 chr11 99198717 99198842 -51584711 - L1PB1 LINE L1 -7 6144 6020 246 148 0 0 chr11 99199034 99199088 -51584465 + (T)n Simple_repeat Simple_repeat 1 54 0 381 165 25 38 chr11 99199088 99199167 -51584386 + LTR67 LTR ERVL 435 512 -45 1910 298 76 24 chr11 99200494 99201594 -51581959 - L2 LINE L2 -16 3297 2152 32 67 0 0 chr11 99203197 99203257 -51580296 + AT_rich Low_complexity Low_complexity 1 60 0 988 236 48 99 chr11 99204230 99204818 -51578735 + L1MC4 LINE L1 7483 8040 -2 409 283 50 6 chr11 99204934 99205114 -51578439 + L1MC5 LINE L1 7278 7465 -496 26 0 0 0 chr11 99205137 99205163 -51578390 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr11 99206035 99206058 -51577495 + AT_rich Low_complexity Low_complexity 1 23 0 459 306 88 32 chr11 99206719 99206935 -51576618 - L2 LINE L2 -479 2835 2608 1365 231 141 16 chr11 99206996 99207421 -51576132 + L1ME1 LINE L1 5518 6001 -163 2197 252 82 33 chr11 99207477 99208895 -51574658 + L1MD2 LINE L1 4531 6035 -324 896 260 193 37 chr11 99208896 99209327 -51574226 + MLT1D LTR MaLR 2 499 -6 398 247 0 21 chr11 99209331 99209424 -51574129 + L1MD2 LINE L1 6031 6121 -238 461 229 69 0 chr11 99209448 99209579 -51573974 + L1MD2 LINE L1 6209 6348 -11 22 80 0 0 chr11 99211889 99211939 -51571614 + AT_rich Low_complexity Low_complexity 1 50 0 657 205 0 0 chr11 99212219 99212346 -51571207 - FLAM_C SINE Alu -16 127 1 632 214 35 79 chr11 99213559 99213788 -51569765 - MER20 DNA MER1_type 0 219 1 230 270 68 14 chr11 99213788 99213862 -51569691 + MLT1L LTR MaLR 149 226 -389 421 323 114 5 chr11 99213897 99214098 -51569455 + MIR SINE MIR 20 242 -20 31 68 0 0 chr11 99214234 99214293 -51569260 + AT_rich Low_complexity Low_complexity 1 59 0 386 284 12 25 chr11 99216512 99216674 -51566879 + GA-rich Low_complexity Low_complexity 1 160 0 193 267 40 27 chr11 99217234 99217309 -51566244 - L2 LINE L2 -794 2520 2445 1920 236 131 42 chr11 99218583 99219300 -51564253 + L1M1 LINE L1 1 807 -6402 7915 203 49 9 chr11 99219383 99221580 -51561973 + L1M1 LINE L1 4580 6873 -494 * 7936 178 30 35 chr11 99221575 99224308 -51559245 - L1P3 LINE L1 -3544 2917 136 1532 252 11 37 chr11 99224308 99224765 -51558788 - LTR2 LTR ERV1 0 449 5 7936 178 30 35 chr11 99224765 99224900 -51558653 - L1P3 LINE L1 -6325 136 2 2209 97 0 13 chr11 99225121 99225420 -51558133 + AluY SINE Alu 3 297 -14 1251 270 80 40 chr11 99225992 99226469 -51557084 + MLT1H LTR MaLR 54 549 0 1496 310 66 12 chr11 99226735 99227438 -51556115 - L2 LINE L2 -168 3145 2400 369 0 0 0 chr11 99228042 99228083 -51555470 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 387 0 0 0 chr11 99228136 99228179 -51555374 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 382 286 34 34 chr11 99228829 99229004 -51554549 - MER5B DNA MER1_type -3 175 1 180 111 0 0 chr11 99229308 99229335 -51554218 + (CA)n Simple_repeat Simple_repeat 2 28 0 1605 179 49 35 chr11 99229336 99229704 -51553849 - THE1C LTR MaLR -2 373 1 207 100 0 0 chr11 99229712 99229742 -51553811 + (CA)n Simple_repeat Simple_repeat 1 30 0 362 293 20 33 chr11 99229879 99229927 -51553626 + ERVL-E LTR ERVL 5610 5757 -7 366 274 29 0 chr11 99229927 99230029 -51553524 + Ricksha DNA DNA 243 347 -2899 1502 315 106 3 chr11 99230033 99230598 -51552955 + MLT2E LTR ERVL 6 628 0 186 48 24 48 chr11 99231789 99231831 -51551722 + (TTA)n Simple_repeat Simple_repeat 1 41 0 295 300 0 0 chr11 99232768 99232848 -51550705 + MLT1J LTR MaLR 130 209 -302 999 183 0 0 chr11 99232850 99233030 -51550523 + FRAM SINE Alu 1 172 -4 337 301 144 35 chr11 99233057 99233313 -51550240 + MLT1J LTR MaLR 228 511 0 210 296 80 34 chr11 99234094 99234182 -51549371 - L2 LINE L2 0 3272 3181 428 342 17 55 chr11 99234245 99234482 -51549071 + MLT1H LTR MaLR 95 322 -227 217 193 17 59 chr11 99234862 99234981 -51548572 + (TA)n Simple_repeat Simple_repeat 2 115 0 5035 201 36 9 chr11 99234981 99236649 -51546904 + L1MA9 LINE L1 4600 6312 0 3812 246 122 19 chr11 99236749 99238797 -51544756 - L1M4 LINE L1 -3417 3227 951 557 262 0 72 chr11 99238806 99238900 -51544653 - L1M4 LINE L1 -5498 1044 945 2219 89 0 10 chr11 99238900 99239202 -51544351 - AluY SINE Alu -12 299 1 557 262 0 72 chr11 99239202 99239344 -51544209 - L1M4 LINE L1 -5597 945 825 354 147 0 0 chr11 99239349 99239417 -51544136 + (GA)n Simple_repeat Simple_repeat 2 69 0 251 207 0 17 chr11 99239419 99239477 -51544076 + GA-rich Low_complexity Low_complexity 4 60 0 1177 318 96 28 chr11 99239499 99239991 -51543562 - L1M4 LINE L1 -5753 789 229 1842 133 112 9 chr11 99239991 99240321 -51543232 + THE1B LTR MaLR 1 364 0 1177 318 96 28 chr11 99240321 99240567 -51542986 - L1M4 LINE L1 -6313 229 1 23 0 0 0 chr11 99242621 99242644 -51540909 + AT_rich Low_complexity Low_complexity 1 23 0 1521 32 0 0 chr11 99242644 99242830 -51540723 - L1PA4 LINE L1 -92 6063 5878 1351 269 73 39 chr11 99243804 99244503 -51539050 + MER20B DNA MER1_type 58 780 -3 237 241 17 0 chr11 99245426 99245484 -51538069 - MER58A DNA MER1_type -4 220 162 537 262 16 0 chr11 99245489 99245611 -51537942 - MER58A DNA MER1_type 0 135 12 338 325 108 21 chr11 99246624 99246818 -51536735 - L2 LINE L2 0 3313 3103 668 265 39 111 chr11 99246823 99247407 -51536146 - MER34 LTR ERV1 0 542 1 298 333 172 48 chr11 99247575 99248086 -51535467 - L2 LINE L2 -203 3110 2506 25 0 0 0 chr11 99248255 99248280 -51535273 + AT_rich Low_complexity Low_complexity 1 25 0 1580 166 17 14 chr11 99248294 99248589 -51534964 + AluJb SINE Alu 13 308 -4 32 26 0 0 chr11 99249035 99249074 -51534479 + AT_rich Low_complexity Low_complexity 1 39 0 502 248 74 47 chr11 99250235 99250493 -51533060 - LTR49-int LTR ERV1 -5759 572 308 312 259 66 75 chr11 99250523 99250751 -51532802 - LTR49-int LTR ERV1 -6089 242 17 183 80 0 0 chr11 99250845 99250870 -51532683 + (CAA)n Simple_repeat Simple_repeat 2 26 0 249 263 105 21 chr11 99251172 99251267 -51532286 - MER34B LTR ERV1 -458 107 5 215 308 0 0 chr11 99251644 99251696 -51531857 - MER5A DNA MER1_type -1 188 137 354 319 68 79 chr11 99252262 99252795 -51530758 + L1ME2 LINE L1 7 533 -5537 1450 295 91 44 chr11 99252965 99255509 -51528044 + L1ME2 LINE L1 525 3136 -2944 1405 199 0 28 chr11 99255513 99255683 -51527870 + AluJo SINE Alu 1 161 -151 2521 152 21 7 chr11 99255683 99256105 -51527448 - MSTA LTR MaLR 0 428 1 1405 199 0 28 chr11 99256105 99256216 -51527337 + AluJo SINE Alu 161 274 -38 452 265 52 28 chr11 99256289 99256538 -51527015 + L1ME2 LINE L1 3177 3431 -2649 583 273 82 61 chr11 99256593 99257593 -51525960 + L1ME2 LINE L1 5061 6089 -9 848 137 0 0 chr11 99257057 99257181 -51526372 - L1PA15 LINE L1 -23 6142 6019 238 276 0 144 chr11 99258133 99258254 -51525299 - MER5A DNA MER1_type -12 166 76 2251 99 0 10 chr11 99258254 99258566 -51524987 - AluSp SINE Alu -4 309 1 238 276 0 144 chr11 99258566 99258618 -51524935 - MER5A DNA MER1_type -102 76 18 21 0 0 0 chr11 99258884 99258905 -51524648 + AT_rich Low_complexity Low_complexity 1 21 0 196 30 61 0 chr11 99259487 99259520 -51524033 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2103 85 0 14 chr11 99259563 99259857 -51523696 - AluY SINE Alu -21 290 1 313 354 25 38 chr11 99260087 99260245 -51523308 + MIR SINE MIR 32 187 -75 352 293 126 11 chr11 99260430 99260604 -51522949 - MIR SINE MIR 0 262 69 181 255 0 0 chr11 99260725 99260772 -51522781 - MIR3 SINE MIR -3 205 159 2356 167 43 14 chr11 99261015 99261429 -51522124 - MSTA LTR MaLR -2 426 1 845 227 4 97 chr11 99261483 99261721 -51521832 + MLT2C1 LTR ERVL 4 219 -195 402 21 0 0 chr11 99261883 99261930 -51521623 + (TA)n Simple_repeat Simple_repeat 1 47 0 1520 220 103 28 chr11 99262048 99262516 -51521037 + MLT1D LTR MaLR 1 503 -2 1930 130 3 7 chr11 99263398 99263726 -51519827 - AluSp SINE Alu 0 327 1 942 227 66 0 chr11 99263827 99264025 -51519528 - AluJo SINE Alu -101 211 1 261 226 9 75 chr11 99264122 99264228 -51519325 - HERV16 LTR ERVL -2925 2071 1973 364 40 0 0 chr11 99264234 99264284 -51519269 - L1PA7 LINE L1 -246 5908 5859 * 1310 44 0 0 chr11 99264283 99264441 -51519112 + L1P3 LINE L1 5563 5720 -434 556 260 8 0 chr11 99264445 99264572 -51518981 - Ricksha DNA DNA -3118 128 1 241 281 83 42 chr11 99264626 99264722 -51518831 + MIR SINE MIR 2 101 -161 1058 307 55 74 chr11 99265464 99265624 -51517929 + HERV16 LTR ERVL 1792 1953 -3043 1467 170 52 138 chr11 99265624 99266089 -51517464 + MSTC LTR MaLR 2 426 -2 1058 307 55 74 chr11 99266089 99266566 -51516987 + HERV16 LTR ERVL 1953 2417 -2579 493 362 55 13 chr11 99266751 99267204 -51516349 + HERV16 LTR ERVL 3040 3511 -2143 23 54 0 0 chr11 99267628 99267665 -51515888 + AT_rich Low_complexity Low_complexity 1 37 0 483 144 207 9 chr11 99269723 99269834 -51513719 + MER1B DNA MER1_type 1 133 -164 456 320 93 25 chr11 99270474 99270840 -51512713 + L1MEc LINE L1 1249 1639 -4924 247 318 65 0 chr11 99270884 99271038 -51512515 + L1MEc LINE L1 1520 1683 -4701 781 279 109 35 chr11 99271544 99272373 -51511180 + L1MEc LINE L1 2346 3235 -3147 224 213 0 0 chr11 99272558 99272605 -51510948 + (CA)n Simple_repeat Simple_repeat 2 48 0 1183 285 67 4 chr11 99272801 99273261 -51510292 + L1ME3 LINE L1 5666 6154 -8 1709 179 21 48 chr11 99274661 99275036 -51508517 + MLT1A1 LTR MaLR 1 365 0 206 172 0 35 chr11 99275474 99275532 -51508021 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 413 174 0 1 chr11 99277004 99277090 -51506463 + L1PB4 LINE L1 5955 6039 -115 333 193 35 0 chr11 99277090 99277147 -51506406 + AluJ/FRAM SINE Alu 231 289 -13 301 157 43 0 chr11 99277168 99277238 -51506315 + L1PB4 LINE L1 6075 6147 -9 1056 226 0 0 chr11 99277291 99277472 -51506081 + Tigger7 DNA MER2_type 56 236 -2251 490 143 197 161 chr11 99277476 99277699 -51505854 + Tigger7 DNA MER2_type 2254 2484 -3 22 0 0 0 chr11 99277707 99277729 -51505824 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr11 99278439 99278474 -51505079 + AT_rich Low_complexity Low_complexity 1 35 0 181 160 20 20 chr11 99279008 99279058 -51504495 + CT-rich Low_complexity Low_complexity 1 50 0 1050 72 0 7 chr11 99279445 99279584 -51503969 - MER85 DNA T2_type 0 139 2 577 333 96 33 chr11 99280086 99280627 -51502926 + L1MEd LINE L1 565 1139 -4980 252 238 0 0 chr11 99280671 99280734 -51502819 + GA-rich Low_complexity Low_complexity 3 65 0 249 268 10 21 chr11 99280748 99280845 -51502708 + L1MEd LINE L1 1173 1268 -5042 268 281 164 35 chr11 99281030 99281201 -51502352 - MIR SINE MIR -64 198 6 1111 299 4 0 chr11 99281404 99281675 -51501878 - LTR40a LTR ERVL 0 519 248 852 244 12 50 chr11 99281728 99281986 -51501567 - LTR40a LTR ERVL -271 248 1 201 286 58 70 chr11 99282005 99282176 -51501377 - L2 LINE L2 -102 3211 3043 243 88 0 0 chr11 99282425 99282459 -51501094 + (TA)n Simple_repeat Simple_repeat 2 35 0 328 215 0 0 chr11 99282564 99282629 -51500924 - LTR40a LTR ERVL 0 519 455 240 184 0 0 chr11 99282645 99282694 -51500859 + (CA)n Simple_repeat Simple_repeat 2 50 0 207 0 0 0 chr11 99282696 99282719 -51500834 + (TG)n Simple_repeat Simple_repeat 2 24 0 234 0 0 0 chr11 99282761 99282787 -51500766 + (TG)n Simple_repeat Simple_repeat 2 27 0 35 24 0 0 chr11 99284156 99284198 -51499355 + AT_rich Low_complexity Low_complexity 1 42 0 852 285 111 14 chr11 99284402 99284915 -51498638 - L1M4 LINE L1 -2199 3947 3385 185 286 31 61 chr11 99285369 99285467 -51498086 - MIR SINE MIR -43 219 125 232 194 0 28 chr11 99285843 99285915 -51497638 + GA-rich Low_complexity Low_complexity 4 73 0 30 59 0 0 chr11 99286016 99286067 -51497486 + AT_rich Low_complexity Low_complexity 1 51 0 22 70 0 0 chr11 99286720 99286763 -51496790 + AT_rich Low_complexity Low_complexity 1 43 0 28 61 0 0 chr11 99287046 99287095 -51496458 + AT_rich Low_complexity Low_complexity 1 49 0 189 0 0 0 chr11 99287716 99287737 -51495816 + (A)n Simple_repeat Simple_repeat 1 21 0 1943 140 0 31 chr11 99287787 99288083 -51495470 + AluSx SINE Alu 1 288 -24 213 65 0 0 chr11 99288083 99288114 -51495439 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 1943 140 0 31 chr11 99288114 99288139 -51495414 + AluSx SINE Alu 288 312 0 526 199 59 29 chr11 99288776 99288985 -51494568 + L1ME1 LINE L1 5211 5424 -743 * 2412 184 8 77 chr11 99288980 99289590 -51493963 - L1PA13 LINE L1 -827 5319 4752 * 2567 142 57 2 chr11 99289587 99290023 -51493530 + L1PA13 LINE L1 5326 5785 -376 14314 42 17 3 chr11 99290024 99292611 -51490942 + L1PA5 LINE L1 3561 6154 0 1973 166 5 39 chr11 99292611 99293012 -51490541 + L1PA13 LINE L1 5769 6163 0 1898 225 36 78 chr11 99293014 99293707 -51489846 + L1ME1 LINE L1 5419 6082 -84 208 191 21 0 chr11 99293725 99293772 -51489781 + (TA)n Simple_repeat Simple_repeat 1 48 0 1426 274 52 20 chr11 99293809 99294591 -51488962 - L1M4 LINE L1 -1091 5055 4214 1278 115 16 0 chr11 99294627 99294818 -51488735 - L1P4 LINE L1 -423 5745 5552 2146 83 16 6 chr11 99294818 99295130 -51488423 + L1PA13 LINE L1 5848 6163 0 950 233 22 89 chr11 99295230 99295543 -51488010 + MLT1A1 LTR MaLR 2 293 -72 310 260 18 0 chr11 99295543 99295713 -51487840 - L1M4 LINE L1 -2064 4082 3935 2047 88 7 43 chr11 99295751 99296056 -51487497 + AluY SINE Alu 1 294 -17 358 367 13 7 chr11 99296798 99296948 -51486605 - L3b LINE CR1 -121 1462 1312 23 86 0 0 chr11 99297007 99297065 -51486488 + AT_rich Low_complexity Low_complexity 1 58 0 285 210 0 0 chr11 99297419 99297481 -51486072 + (CA)n Simple_repeat Simple_repeat 2 63 0 387 0 0 0 chr11 99298263 99298306 -51485247 + (TC)n Simple_repeat Simple_repeat 2 44 0 339 197 0 14 chr11 99298306 99298370 -51485183 + L1MC4 LINE L1 6641 6705 -1337 289 208 69 8 chr11 99298472 99298602 -51484951 + (TA)n Simple_repeat Simple_repeat 1 138 0 304 364 35 14 chr11 99298642 99298785 -51484768 - MIR3 SINE MIR -48 160 15 815 374 87 2 chr11 99299423 99299816 -51483737 + LTR33 LTR ERVL 4 429 -92 582 184 0 0 chr11 99299818 99299916 -51483637 - MSTD LTR MaLR -2 394 297 246 100 100 0 chr11 99299932 99299972 -51483581 - MSTC LTR MaLR -384 44 1 2347 267 24 19 chr11 99299973 99300097 -51483456 - MSTD-int LTR MaLR -1 1734 1612 2049 203 39 0 chr11 99300097 99300506 -51483047 + MSTA LTR MaLR 1 425 -3 2347 267 24 19 chr11 99300506 99300972 -51482581 - MSTD-int LTR MaLR -123 1612 1141 1216 220 110 33 chr11 99300970 99301333 -51482220 - MSTD-int LTR MaLR -1319 416 26 * 1054 286 10 30 chr11 99301386 99301683 -51481870 - MSTD LTR MaLR -2 394 104 1420 184 98 13 chr11 99301683 99301988 -51481565 - MSTB LTR MaLR 0 426 96 1242 47 0 0 chr11 99301988 99302137 -51481416 - L1P2 LINE L1 -452 5703 5555 435 124 214 0 chr11 99302158 99302247 -51481306 - MSTB LTR MaLR -318 108 1 363 177 48 15 chr11 99302247 99302336 -51481217 - MSTC LTR MaLR -306 90 1 12176 182 26 12 chr11 99303924 99304588 -51478965 - Tigger1 DNA MER2_type -1 2417 1764 1563 118 4 17 chr11 99304588 99304862 -51478691 - AluSg/x SINE Alu 0 310 68 12176 182 26 12 chr11 99304862 99304976 -51478577 - Tigger1 DNA MER2_type -654 1764 1653 2222 89 13 10 chr11 99304976 99305280 -51478273 - AluY SINE Alu -6 305 1 12176 182 26 12 chr11 99305280 99305730 -51477823 - Tigger1 DNA MER2_type -765 1653 1211 1992 136 0 0 chr11 99305730 99306017 -51477536 - AluSx SINE Alu -25 287 1 12176 182 26 12 chr11 99306017 99307170 -51476383 - Tigger1 DNA MER2_type -1207 1211 1 194 62 31 0 chr11 99307802 99307834 -51475719 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1710 215 53 52 chr11 99308834 99309388 -51474165 - MER39 LTR ERV1 -10 683 1 190 250 0 0 chr11 99309393 99309429 -51474124 + L2 LINE L2 3151 3186 -86 33 25 0 0 chr11 99309767 99309807 -51473746 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr11 99310095 99310119 -51473434 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 99310415 99310443 -51473110 + AT_rich Low_complexity Low_complexity 1 28 0 277 214 20 0 chr11 99311371 99311469 -51472084 + CT-rich Low_complexity Low_complexity 3 102 0 312 331 98 49 chr11 99312164 99312532 -51471021 + L1MC/D LINE L1 5279 5664 -2144 26 0 0 0 chr11 99312691 99312717 -51470836 + AT_rich Low_complexity Low_complexity 1 26 0 1347 172 8 22 chr11 99312744 99313011 -51470542 + Tigger2 DNA MER2_type 2334 2596 -122 297 360 75 6 chr11 99315067 99315228 -51468325 + MIR SINE MIR 5 176 -86 11577 171 68 6 chr11 99317482 99317531 -51466022 + Tigger1 DNA MER2_type 2 47 -2371 183 80 0 0 chr11 99317531 99317556 -51465997 + (TG)n Simple_repeat Simple_repeat 2 26 0 11577 171 68 6 chr11 99317556 99319781 -51463772 + Tigger1 DNA MER2_type 47 2418 0 207 313 60 27 chr11 99320125 99320275 -51463278 - MIR SINE MIR -1 261 107 27 0 0 0 chr11 99320509 99320536 -51463017 + AT_rich Low_complexity Low_complexity 1 27 0 361 210 12 0 chr11 99320537 99320618 -51462935 + L1 LINE L1 4954 5035 -1111 387 295 12 0 chr11 99320742 99320908 -51462645 + (CACCC)n Simple_repeat Simple_repeat 3 170 0 258 207 0 0 chr11 99321272 99321330 -51462223 + (CA)n Simple_repeat Simple_repeat 2 59 0 315 0 0 0 chr11 99322118 99322153 -51461400 + (TC)n Simple_repeat Simple_repeat 2 36 0 243 0 0 0 chr11 99322152 99322179 -51461374 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 2297 107 0 3 chr11 99323451 99323759 -51459794 - AluSg SINE Alu -3 307 1 1879 139 17 13 chr11 99325101 99325587 -51457966 - AluSq SINE Alu 0 313 1 232 399 44 16 chr11 99325884 99326067 -51457486 - MIR SINE MIR -67 195 8 256 200 12 50 chr11 99326068 99326148 -51457405 - L1ME4a LINE L1 -53 6068 5992 1247 218 0 23 chr11 99326164 99326426 -51457127 - AluJb SINE Alu -54 258 3 281 89 22 0 chr11 99327709 99327754 -51455799 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 955 252 28 12 chr11 99328324 99328574 -51454979 - MLT1A1 LTR MaLR -10 355 102 1724 166 19 7 chr11 99328903 99329211 -51454342 - AluSx SINE Alu 0 312 1 408 250 55 16 chr11 99329491 99329619 -51453934 + MIR SINE MIR 80 212 -50 361 263 44 31 chr11 99330803 99331031 -51452522 + L1MEc LINE L1 679 909 -5487 628 255 67 57 chr11 99331094 99331275 -51452278 + L1ME2 LINE L1 5768 5946 -218 937 211 4 48 chr11 99331275 99331503 -51452050 + MER20 DNA MER1_type 1 218 -1 628 255 67 57 chr11 99331503 99331693 -51451860 + L1ME2 LINE L1 5946 6143 -21 189 183 19 39 chr11 99331700 99331804 -51451749 + (TA)n Simple_repeat Simple_repeat 1 102 0 202 312 126 45 chr11 99331832 99332031 -51451522 + L2 LINE L2 2762 2976 -338 1319 196 136 168 chr11 99332137 99333071 -51450482 - LTR1B LTR ERV1 0 1020 1 5528 195 44 44 chr11 99333071 99334756 -51448797 - HUERS-P2 LTR ERV1 0 3088 75 436 235 42 25 chr11 99334871 99334990 -51448563 - LTR28 LTR ERV1 0 1020 900 1664 174 61 28 chr11 99335205 99335568 -51447985 + THE1C LTR MaLR 1 375 0 330 343 15 0 chr11 99335791 99335925 -51447628 - Zaphod DNA AcHobo -1 4030 3895 418 176 49 19 chr11 99336091 99336194 -51447359 + MER7A DNA MER2_type 1 106 -240 2288 214 55 2 chr11 99336295 99336919 -51446634 + L1MB8 LINE L1 5136 5783 -395 * 2961 179 25 2 chr11 99336915 99337475 -51446078 + L1MA3 LINE L1 3670 4242 -1904 4632 121 62 8 chr11 99337475 99338267 -51445286 + L1MA3 LINE L1 5462 6305 0 1682 158 7 13 chr11 99338274 99338578 -51444975 + L1MB8 LINE L1 5782 6083 -95 191 322 67 0 chr11 99339642 99339732 -51443821 - MIR SINE MIR 0 262 167 532 264 61 33 chr11 99340278 99340490 -51443063 + MIR SINE MIR 20 237 -25 939 222 82 90 chr11 99340548 99340891 -51442662 + MER2 DNA MER2_type 2 341 -3 199 362 9 29 chr11 99340909 99341014 -51442539 + MIR SINE MIR 86 188 -74 2218 125 0 0 chr11 99341018 99341330 -51442223 + AluSx SINE Alu 1 312 0 23 0 0 0 chr11 99341936 99341959 -51441594 + AT_rich Low_complexity Low_complexity 1 23 0 33 25 0 0 chr11 99342085 99342125 -51441428 + AT_rich Low_complexity Low_complexity 1 40 0 31360 48 8 1 chr11 99343276 99347256 -51436297 + L1P LINE L1 1237 5248 -898 7052 53 5 2 chr11 99347363 99348331 -51435222 + L1PA4 LINE L1 5186 6152 -3 183 327 48 93 chr11 99348680 99349035 -51434518 + L2 LINE L2 1331 1669 -1645 414 185 46 23 chr11 99349045 99349244 -51434309 + (TTATA)n Simple_repeat Simple_repeat 1 203 0 188 306 123 35 chr11 99349265 99349435 -51434118 + L2 LINE L2 2804 2988 -284 1080 265 115 2 chr11 99349983 99350383 -51433170 + MER110A LTR ERV1 24 468 0 202 319 64 50 chr11 99350568 99350709 -51432844 + L2 LINE L2 3011 3153 -160 456 331 135 21 chr11 99350998 99351376 -51432177 + LTR16C LTR ERVL 2 422 -69 24 0 0 0 chr11 99351895 99351919 -51431634 + AT_rich Low_complexity Low_complexity 1 24 0 1291 293 88 30 chr11 99352910 99353446 -51430107 + MLT1G LTR MaLR 23 589 -1 235 357 40 24 chr11 99353587 99353681 -51429872 - MIR SINE MIR -112 150 52 252 0 0 0 chr11 99353681 99353709 -51429844 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 235 357 40 24 chr11 99353709 99353740 -51429813 - MIR SINE MIR -210 52 23 208 309 0 0 chr11 99354000 99354042 -51429511 + L2 LINE L2 3210 3251 -21 348 303 42 8 chr11 99354331 99354450 -51429103 - MIR SINE MIR -79 183 61 22 70 0 0 chr11 99356566 99356609 -51426944 + AT_rich Low_complexity Low_complexity 1 43 0 378 42 0 0 chr11 99357852 99357900 -51425653 + (CA)n Simple_repeat Simple_repeat 2 49 0 639 260 140 106 chr11 99358311 99358381 -51425172 - MLT1F LTR MaLR 0 542 476 2301 102 0 3 chr11 99358381 99358685 -51424868 - AluSg SINE Alu -7 303 1 639 260 140 106 chr11 99358685 99358809 -51424744 - MLT1F LTR MaLR -66 476 358 2150 78 0 0 chr11 99358809 99359125 -51424428 - L1PA8 LINE L1 0 6172 5872 639 260 140 106 chr11 99359125 99359449 -51424104 - MLT1F LTR MaLR -184 358 5 203 250 48 48 chr11 99359977 99360061 -51423492 - L3 LINE CR1 -901 676 593 213 330 21 21 chr11 99360063 99360157 -51423396 + MIR SINE MIR 71 164 -98 328 322 103 21 chr11 99360240 99360473 -51423080 - MIR SINE MIR 0 262 11 500 318 46 23 chr11 99360534 99360795 -51422758 + MLT1L LTR MaLR 1 267 -348 2879 320 81 29 chr11 99361143 99362765 -51420788 - L2 LINE L2 0 3313 1623 4108 272 45 34 chr11 99363339 99364929 -51418624 + L1ME1 LINE L1 16 1597 -4945 5655 227 21 5 chr11 99364929 99366092 -51417461 - ERVL LTR ERVL -2561 3203 2022 1615 301 22 25 chr11 99366098 99366735 -51416818 - ERVL LTR ERVL -4975 701 56 1962 138 28 3 chr11 99366735 99367026 -51416527 - AluSx SINE Alu -12 300 3 1615 301 22 25 chr11 99367026 99367079 -51416474 - ERVL LTR ERVL -5620 56 4 1421 271 141 24 chr11 99367088 99368131 -51415422 + L1ME1 LINE L1 2663 3827 -2817 * 3489 231 85 42 chr11 99368109 99369590 -51413963 + L1ME1 LINE L1 4034 5647 -1029 1975 113 0 14 chr11 99369590 99369873 -51413680 + AluSg SINE Alu 32 310 0 3489 231 85 42 chr11 99369873 99370439 -51413114 + L1ME1 LINE L1 5647 6187 -489 615 276 9 56 chr11 99370480 99370712 -51412841 + MER58A DNA MER1_type 1 221 -3 21 0 0 0 chr11 99372630 99372651 -51410902 + AT_rich Low_complexity Low_complexity 1 21 0 1981 125 4 0 chr11 99373314 99373627 -51409926 + AluSx SINE Alu 1 314 0 763 253 0 0 chr11 99374260 99374422 -51409131 + FAM SINE Alu 5 166 -9 22 80 0 0 chr11 99374425 99374475 -51409078 + AT_rich Low_complexity Low_complexity 1 50 0 2233 190 16 19 chr11 99374534 99374961 -51408592 - MSTB LTR MaLR 0 426 1 1567 234 77 34 chr11 99375013 99375168 -51408385 + L1ME1 LINE L1 6175 6322 -342 2456 70 0 0 chr11 99375168 99375470 -51408083 + AluY SINE Alu 8 309 -2 1567 234 77 34 chr11 99375470 99375779 -51407774 + L1ME1 LINE L1 6322 6659 -5 2301 82 3 0 chr11 99376386 99376691 -51406862 - AluY SINE Alu -5 306 1 740 279 77 60 chr11 99378584 99378986 -51404567 - MLT1I LTR MaLR 0 409 1 194 375 113 0 chr11 99379848 99379928 -51403625 + L2 LINE L2 3134 3222 -50 31 0 0 0 chr11 99379942 99379973 -51403580 + AT_rich Low_complexity Low_complexity 1 31 0 906 303 46 8 chr11 99380067 99380328 -51403225 + MLT1I LTR MaLR 139 409 0 1389 203 3 43 chr11 99381366 99381666 -51401887 + AluJo SINE Alu 1 288 -24 392 280 42 28 chr11 99383593 99383736 -51399817 - L3b LINE CR1 -241 1342 1198 1797 191 20 73 chr11 99385601 99385921 -51397632 + MER47B DNA MER2_type 1 293 -2030 2184 63 17 17 chr11 99385921 99386222 -51397331 + AluY SINE Alu 1 301 -10 1797 191 20 73 chr11 99386222 99386342 -51397211 + MER47B DNA MER2_type 293 418 0 3598 156 38 6 chr11 99386676 99387311 -51396242 - MER4D LTR ERV1 -246 657 3 38 39 0 0 chr11 99387393 99387445 -51396108 + AT_rich Low_complexity Low_complexity 1 52 0 256 303 11 67 chr11 99388184 99388273 -51395280 - L2 LINE L2 -2 3270 3187 3659 117 15 0 chr11 99388293 99388839 -51394714 + MER41A LTR ERV1 1 554 0 314 288 78 13 chr11 99389057 99389210 -51394343 + L1MC/D LINE L1 5425 5587 -655 995 204 0 0 chr11 99389211 99389387 -51394166 - AluSc SINE Alu -12 297 122 26 0 0 0 chr11 99389392 99389418 -51394135 + AT_rich Low_complexity Low_complexity 1 26 0 192 217 0 0 chr11 99389455 99389501 -51394052 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 224 398 11 68 chr11 99391100 99391245 -51392308 + MER5A DNA MER1_type 11 146 -43 2084 86 0 4 chr11 99391245 99391513 -51392040 + AluY SINE Alu 38 304 -7 224 398 11 68 chr11 99391513 99391543 -51392010 + MER5A DNA MER1_type 146 176 -13 194 91 30 0 chr11 99391712 99391745 -51391808 + (TA)n Simple_repeat Simple_repeat 2 35 0 745 345 31 21 chr11 99391761 99392086 -51391467 + Zaphod DNA AcHobo 12 339 -3692 226 240 20 0 chr11 99392211 99392261 -51391292 - Tigger3(Golem) DNA MER2_type -1 3028 2978 1842 95 0 23 chr11 99392417 99392680 -51390873 - AluY SINE Alu 0 311 55 411 21 0 0 chr11 99392683 99392731 -51390822 + (CATTT)n Simple_repeat Simple_repeat 2 49 0 654 220 92 61 chr11 99392732 99393059 -51390494 - L1MCb LINE L1 -3002 3562 3226 7623 182 19 11 chr11 99393098 99395466 -51388087 - L1PA13 LINE L1 -5 6809 4435 4700 177 19 8 chr11 99395467 99396521 -51387032 - L1PA13 LINE L1 -4234 2563 1486 1515 240 41 27 chr11 99396525 99397013 -51386540 - L1M4 LINE L1 -3067 3079 2585 * 1639 258 63 18 chr11 99397012 99397896 -51385657 - L1MCb LINE L1 -3341 3223 2297 1527 152 74 0 chr11 99397898 99398194 -51385359 - LTR24C LTR ERV1 -315 320 3 1612 260 56 40 chr11 99398199 99398400 -51385153 - L1MCb LINE L1 -4850 1195 999 1889 144 31 0 chr11 99398400 99398692 -51384861 - AluSx SINE Alu -11 301 1 1612 260 56 40 chr11 99398692 99398993 -51384560 - L1MCb LINE L1 -5046 999 1111 2249 219 3 47 chr11 99398993 99399572 -51383981 - MER41C LTR ERV1 0 554 1 1612 260 56 40 chr11 99399572 99400124 -51383429 - L1MCb LINE L1 -4933 1112 570 965 309 43 17 chr11 99400339 99400757 -51382796 - L1MCb LINE L1 -5612 433 5 25 0 0 0 chr11 99400882 99400907 -51382646 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr11 99401861 99401890 -51381663 + AT_rich Low_complexity Low_complexity 1 29 0 1238 215 51 4 chr11 99402527 99402801 -51380752 - AluJo SINE Alu -11 291 5 201 403 48 0 chr11 99402873 99402997 -51380556 - L2 LINE L2 -2 3270 3141 357 259 122 8 chr11 99403110 99403241 -51380312 - MIR SINE MIR -6 256 111 198 318 48 48 chr11 99403257 99403383 -51380170 + L2 LINE L2 3188 3313 0 39 0 0 0 chr11 99404390 99404429 -51379124 + AT_rich Low_complexity Low_complexity 1 39 0 1961 233 59 6 chr11 99406818 99407294 -51376259 - MLT1D LTR MaLR -2 503 3 205 381 19 10 chr11 99408836 99408955 -51374598 - MER5A DNA MER1_type 0 178 63 298 385 80 13 chr11 99409155 99409381 -51374172 - L3 LINE CR1 -196 1381 1141 513 191 91 0 chr11 99409397 99409507 -51374046 + Charlie5 DNA MER1_type 1 120 -2492 2059 115 3 0 chr11 99409517 99409804 -51373749 + AluY SINE Alu 3 290 -21 24 0 0 0 chr11 99410211 99410235 -51373318 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr11 99410699 99410740 -51372813 + AT_rich Low_complexity Low_complexity 1 41 0 340 269 34 63 chr11 99411110 99411285 -51372268 - L2 LINE L2 0 3313 3144 415 244 38 129 chr11 99411337 99411677 -51371876 + L2 LINE L2 3005 3313 0 553 193 234 0 chr11 99412188 99412342 -51371211 + MLT1D LTR MaLR 371 505 0 1648 141 36 74 chr11 99413009 99413399 -51370154 + THE1C LTR MaLR 1 375 0 285 146 10 146 chr11 99413508 99413611 -51369942 + MER69 DNA AcHobo 2434 2522 -4 182 322 119 42 chr11 99414480 99414716 -51368837 - L3 LINE CR1 -7 1570 1317 462 342 53 59 chr11 99414880 99415644 -51367909 + L2 LINE L2 2557 3313 0 2165 120 7 0 chr11 99416241 99416542 -51367011 + AluSg SINE Alu 1 303 -7 5978 104 6 5 chr11 99416542 99417387 -51366166 + L1PA10 LINE L1 5322 6167 -1 1709 241 56 6 chr11 99417420 99417568 -51365985 - L1 LINE L1 -1053 5093 4954 180 0 0 0 chr11 99417568 99417588 -51365965 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1709 241 56 6 chr11 99417588 99418138 -51365415 - L1 LINE L1 -1192 4954 4328 7478 30 9 9 chr11 99418200 99419183 -51364370 - L1PA4 LINE L1 0 6155 5177 610 105 11 0 chr11 99419190 99419285 -51364268 - L1P LINE L1 -3327 2819 2724 * 2653 76 8 3 chr11 99419279 99419649 -51363904 + L1PA7 LINE L1 1345 1716 -4745 1898 108 0 0 chr11 99419650 99419900 -51363653 + AluSq SINE Alu 50 299 -14 14346 84 7 15 chr11 99419900 99422754 -51360799 + L1PA7 LINE L1 3609 6430 -39 7453 199 26 16 chr11 99422854 99425240 -51358313 + L1MA7 LINE L1 3692 6110 -181 1194 223 77 31 chr11 99425240 99425567 -51357986 - MER2 DNA MER2_type -2 342 1 7453 199 26 16 chr11 99425567 99425751 -51357802 + L1MA7 LINE L1 6110 6291 0 378 276 95 4 chr11 99425742 99425985 -51357568 + L1 LINE L1 3127 3391 -2755 * 868 274 8 4 chr11 99425988 99426247 -51357306 + L1MC3 LINE L1 7342 7601 -184 27 29 0 0 chr11 99426300 99426334 -51357219 + AT_rich Low_complexity Low_complexity 1 34 0 34 24 0 0 chr11 99427203 99427244 -51356309 + AT_rich Low_complexity Low_complexity 1 41 0 42303 33 22 2 chr11 99427244 99433275 -51350278 - L1HS LINE L1 0 6155 1 2297 69 0 0 chr11 99433795 99434098 -51349455 - L1P LINE L1 -1454 4692 4390 34630 47 5 0 chr11 99434098 99438646 -51344907 + L1PA3 LINE L1 981 5548 -607 726 32 0 0 chr11 99438646 99438741 -51344812 + AluYb8 SINE Alu 223 317 -1 4867 34 0 7 chr11 99438741 99439362 -51344191 + L1PA3 LINE L1 5554 6170 0 2427 219 122 5 chr11 99439363 99439960 -51343593 + L1 LINE L1 4261 4964 -1182 180 0 0 0 chr11 99439960 99439980 -51343573 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2427 219 122 5 chr11 99439980 99440128 -51343425 + L1 LINE L1 4964 5093 -1053 6664 134 8 57 chr11 99440161 99441037 -51342516 - L1PA10 LINE L1 -1 6167 5249 2307 95 0 3 chr11 99441037 99441342 -51342211 - AluY SINE Alu -7 304 1 6664 134 8 57 chr11 99441342 99441538 -51342015 - L1PA10 LINE L1 -919 5249 5045 1857 166 0 10 chr11 99441538 99441852 -51341701 - AluSx SINE Alu 0 312 2 6664 134 8 57 chr11 99441852 99442845 -51340708 - L1PA10 LINE L1 -1123 5045 4193 1879 300 36 26 chr11 99442879 99443332 -51340221 - L1M3b LINE L1 -4543 1738 1271 1939 158 0 0 chr11 99443332 99443643 -51339910 - AluSq SINE Alu 0 311 1 1879 300 36 26 chr11 99443643 99443989 -51339564 - L1M3b LINE L1 -5010 1271 930 760 307 81 49 chr11 99444800 99445207 -51338346 - ERVL LTR ERVL -2293 3471 3052 1732 168 24 13 chr11 99445242 99445540 -51338013 + AluSx SINE Alu 6 306 -6 346 322 119 0 chr11 99445982 99446100 -51337453 + L2 LINE L2 3180 3311 -2 221 299 94 51 chr11 99446604 99446721 -51336832 + L2 LINE L2 3191 3312 -1 571 318 68 29 chr11 99447371 99447679 -51335874 - L2 LINE L2 0 3313 2994 362 291 74 20 chr11 99448429 99448769 -51334784 + L1ME2 LINE L1 179 578 -5627 326 318 157 19 chr11 99448786 99449264 -51334289 + L1ME2 LINE L1 1371 1914 -4482 779 278 86 40 chr11 99449343 99449925 -51333628 + L1ME2 LINE L1 3349 3957 -2258 * 4376 199 33 25 chr11 99449912 99451313 -51332240 + L1MA7 LINE L1 4873 6291 0 562 290 90 7 chr11 99451312 99451591 -51331962 + L1ME2 LINE L1 3945 4246 -1969 * 2122 227 62 21 chr11 99451598 99452260 -51331293 + L1ME2 LINE L1 5327 6015 -218 494 289 12 40 chr11 99452345 99452518 -51331035 + MER63A DNA MER1_type 38 205 -5 256 294 71 0 chr11 99452522 99452648 -51330905 + L1ME2 LINE L1 6080 6214 -19 28 0 0 0 chr11 99453025 99453053 -51330500 + AT_rich Low_complexity Low_complexity 1 28 0 1354 267 95 21 chr11 99453244 99453709 -51329844 - MLT1D LTR MaLR -6 499 1 24 0 0 0 chr11 99454296 99454320 -51329233 + AT_rich Low_complexity Low_complexity 1 24 0 223 217 17 17 chr11 99454603 99454663 -51328890 + GA-rich Low_complexity Low_complexity 4 63 0 24 0 0 0 chr11 99454892 99454916 -51328637 + AT_rich Low_complexity Low_complexity 1 24 0 1713 175 24 0 chr11 99455939 99456236 -51327317 - AluSx SINE Alu -8 304 1 7392 34 9 0 chr11 99456275 99457697 -51325856 - L1PA4 LINE L1 -3 6152 4724 24 32 0 0 chr11 99457710 99457741 -51325812 + AT_rich Low_complexity Low_complexity 1 31 0 228 295 93 16 chr11 99459412 99459541 -51324012 + MIR SINE MIR 118 256 -6 1768 247 84 38 chr11 99459834 99460868 -51322685 + L1ME1 LINE L1 799 2032 -4394 1476 211 7 10 chr11 99460868 99461157 -51322396 - AluJb SINE Alu -24 288 1 1768 247 84 38 chr11 99461157 99461686 -51321867 + L1ME1 LINE L1 2032 2535 -3891 202 263 70 0 chr11 99462088 99462145 -51321408 + MER91B DNA MER1_type 15 75 -115 403 240 48 0 chr11 99462226 99462330 -51321223 + L1MC3 LINE L1 7379 7487 -298 351 339 25 0 chr11 99462335 99462453 -51321100 - MLT1H1 LTR MaLR -365 190 70 3485 201 113 17 chr11 99462457 99463432 -51320121 + L1MD1 LINE L1 5154 6213 -29 591 219 0 8 chr11 99463437 99463565 -51319988 + FLAM_C SINE Alu 1 127 -6 2366 87 3 0 chr11 99464045 99464343 -51319210 + AluSc SINE Alu 3 301 -8 204 40 0 0 chr11 99465724 99465749 -51317804 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 951 314 68 43 chr11 99467202 99467733 -51315820 - MLT1H1 LTR MaLR -6 549 6 332 273 63 63 chr11 99467762 99467905 -51315648 - MLT1H1-int LTR MaLR -31 1704 1562 1237 191 9 4 chr11 99468008 99468238 -51315315 - LTR57 LTR ERVL -7 404 174 252 184 0 0 chr11 99468238 99468287 -51315266 + (TG)n Simple_repeat Simple_repeat 1 49 0 1100 132 11 0 chr11 99468287 99468469 -51315084 - LTR57 LTR ERVL -227 184 1 25 0 0 0 chr11 99469146 99469171 -51314382 + AT_rich Low_complexity Low_complexity 1 25 0 766 264 62 3 chr11 99469421 99469709 -51313844 + L1ME1 LINE L1 2726 3030 -3396 4664 188 30 18 chr11 99469728 99470232 -51313321 + L1PB4 LINE L1 3884 4381 -1775 216 0 0 0 chr11 99470232 99470256 -51313297 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 4664 188 30 18 chr11 99470256 99470345 -51313208 + L1PB4 LINE L1 4381 4468 -1688 2029 155 19 48 chr11 99470345 99470505 -51313048 + THE1B LTR MaLR 1 164 -200 195 42 0 0 chr11 99470505 99470529 -51313024 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1883 118 0 8 chr11 99470536 99470791 -51312762 - AluSx SINE Alu -59 253 1 2029 155 19 48 chr11 99470791 99470996 -51312557 + THE1B LTR MaLR 170 363 -1 4664 188 30 18 chr11 99470996 99472297 -51311256 + L1PB4 LINE L1 4468 5787 -369 260 172 17 0 chr11 99472329 99472387 -51311166 + (CATATA)n Simple_repeat Simple_repeat 5 63 0 279 88 21 14 chr11 99472410 99472470 -51311083 + L1M2 LINE L1 5781 5838 -336 347 225 25 8 chr11 99472470 99472728 -51310825 + (TA)n Simple_repeat Simple_repeat 1 262 0 1846 165 3 58 chr11 99472731 99473113 -51310440 + L1PB4 LINE L1 5789 6149 -7 1445 238 61 30 chr11 99473114 99473757 -51309796 + L1ME1 LINE L1 3064 3726 -2700 1403 167 0 4 chr11 99473759 99473999 -51309554 + AluY SINE Alu 56 294 -17 33 25 0 0 chr11 99473999 99474039 -51309514 + AT_rich Low_complexity Low_complexity 1 40 0 1927 245 165 13 chr11 99474061 99475105 -51308448 + L1ME1 LINE L1 4435 5636 -790 1939 246 86 26 chr11 99475133 99475774 -51307779 + L1ME1 LINE L1 5760 6438 -8 2187 88 3 25 chr11 99476172 99476490 -51307063 + AluY SINE Alu 1 311 0 14184 96 4 19 chr11 99476689 99479576 -51303977 - L1PA7 LINE L1 -7 6462 3609 1898 108 0 0 chr11 99479576 99479826 -51303727 - AluSq SINE Alu -14 299 50 2653 76 8 3 chr11 99479827 99480197 -51303356 - L1PA7 LINE L1 -4745 1716 1345 762 95 6 142 chr11 99480191 99480293 -51303260 + L1P LINE L1 2724 2796 -3350 * 7507 31 1 4 chr11 99480293 99481277 -51302276 + L1PA4 LINE L1 5177 6155 0 762 95 6 142 chr11 99481277 99481343 -51302210 + L1P LINE L1 2796 2869 -3277 1343 147 72 7 chr11 99481623 99481902 -51301651 - L1MA8 LINE L1 -11 6280 5984 204 302 139 35 chr11 99483303 99483389 -51300164 + L2 LINE L2 3163 3257 -15 31 26 0 0 chr11 99483798 99483836 -51299717 + AT_rich Low_complexity Low_complexity 1 38 0 950 242 92 11 chr11 99483836 99484195 -51299358 - LTR37A LTR ERV1 0 426 39 333 354 56 49 chr11 99485275 99485903 -51297650 + L1MEc LINE L1 211 842 -5554 207 0 0 0 chr11 99485912 99485935 -51297618 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 661 213 0 0 chr11 99485984 99486106 -51297447 + FLAM_C SINE Alu 2 123 -10 1420 212 18 3 chr11 99486129 99486412 -51297141 + AluJo SINE Alu 7 293 -19 297 260 83 10 chr11 99486502 99486694 -51296859 + L1MEc LINE L1 968 1173 -5223 413 138 163 0 chr11 99486707 99486787 -51296766 + THE1C LTR MaLR 1 93 -282 204 364 26 0 chr11 99486967 99487044 -51296509 + MER91A DNA MER1_type 2 80 -116 216 0 0 0 chr11 99487588 99487612 -51295941 + (TA)n Simple_repeat Simple_repeat 2 25 0 441 238 119 7 chr11 99489916 99490067 -51293486 - L1MC4 LINE L1 -311 7731 7564 1430 225 61 15 chr11 99490080 99490476 -51293077 - L1MC3 LINE L1 -12 7773 7360 273 29 0 0 chr11 99490527 99490561 -51292992 + (TG)n Simple_repeat Simple_repeat 1 34 0 225 0 0 0 chr11 99490562 99490587 -51292966 + (T)n Simple_repeat Simple_repeat 1 25 0 572 266 12 23 chr11 99490635 99490808 -51292745 + L1MC4 LINE L1 7404 7574 -468 1780 246 119 11 chr11 99490928 99491542 -51292011 - L1MC4 LINE L1 -649 7393 6714 1615 218 0 29 chr11 99491564 99491940 -51291613 + MLT1A1 LTR MaLR 1 365 0 634 175 38 14 chr11 99491950 99492113 -51291440 + L1MC4 LINE L1 7029 7268 -633 794 264 103 37 chr11 99492133 99492618 -51290935 - L1MC4 LINE L1 -1206 6602 6170 1541 200 11 0 chr11 99492784 99493064 -51290489 - AluJb SINE Alu -29 283 1 181 313 50 25 chr11 99493613 99493693 -51289860 + L3b LINE CR1 1300 1381 -202 277 337 71 10 chr11 99493694 99493792 -51289761 - MIR3 SINE MIR -13 195 92 25 0 0 0 chr11 99494152 99494177 -51289376 + AT_rich Low_complexity Low_complexity 1 25 0 313 341 7 37 chr11 99494251 99494386 -51289167 + MIR SINE MIR 97 227 -35 237 355 58 29 chr11 99494456 99494594 -51288959 + MIR SINE MIR 39 180 -82 14148 59 18 6 chr11 99494594 99496497 -51287056 - L1PA5 LINE L1 -2245 3901 1975 11278 65 3 1 chr11 99496497 99498773 -51284780 + L1PA5 LINE L1 3891 6154 0 2052 136 22 30 chr11 99499321 99499688 -51283865 - THE1B LTR MaLR 0 364 1 1874 158 3 3 chr11 99500285 99500588 -51282965 + AluSx SINE Alu 1 303 -9 326 326 104 7 chr11 99500590 99500734 -51282819 + L2 LINE L2 3151 3308 -5 2032 135 7 0 chr11 99500932 99501220 -51282333 - AluSc SINE Alu -19 290 1 462 342 53 59 chr11 99501817 99502581 -51280972 - L2 LINE L2 0 3313 2557 182 322 119 42 chr11 99502745 99502981 -51280572 + L3 LINE CR1 1317 1570 -7 285 146 10 146 chr11 99503851 99503954 -51279599 - MER69 DNA AcHobo -4 2522 2434 1678 141 36 72 chr11 99504063 99504452 -51279101 - THE1C LTR MaLR 0 375 1 350 328 83 36 chr11 99504512 99504704 -51278849 - MIR SINE MIR -56 206 6 25 51 0 0 chr11 99505057 99505096 -51278457 + AT_rich Low_complexity Low_complexity 1 39 0 744 261 126 35 chr11 99505543 99506034 -51277519 - L1MC4 LINE L1 -232 7744 7209 788 280 146 24 chr11 99506093 99506471 -51277082 - L1MC4 LINE L1 -1928 5814 5391 884 295 132 37 chr11 99506473 99507589 -51275964 - L1MC4 LINE L1 -4774 1306 77 260 294 192 20 chr11 99507889 99508035 -51275518 + MIR SINE MIR 48 218 -44 233 316 116 11 chr11 99508048 99508143 -51275410 - MIR SINE MIR -60 148 44 1672 205 101 3 chr11 99509262 99509638 -51273915 - MSTB LTR MaLR -13 413 1 1967 236 127 19 chr11 99509762 99510410 -51273143 + MER50 LTR ERV1 17 734 0 1745 150 21 3 chr11 99510438 99510778 -51272775 + L1MA7 LINE L1 4307 4652 -1494 * 5359 181 14 11 chr11 99510777 99512082 -51271471 + L1MA7 LINE L1 4985 6291 0 250 272 47 47 chr11 99512576 99512745 -51270808 - L1MEc LINE L1 -4940 1456 1288 23 0 0 0 chr11 99512816 99512839 -51270714 + AT_rich Low_complexity Low_complexity 1 23 0 277 281 69 73 chr11 99513056 99513493 -51270060 + L1MC4a LINE L1 4109 4543 -1603 2087 139 54 20 chr11 99513504 99513856 -51269697 + THE1B LTR MaLR 1 364 0 441 0 0 0 chr11 99514507 99514556 -51268997 + (TG)n Simple_repeat Simple_repeat 2 50 0 496 295 97 48 chr11 99514575 99515162 -51268391 + L1MC4a LINE L1 4696 5311 -835 41 58 0 0 chr11 99515555 99515624 -51267929 + AT_rich Low_complexity Low_complexity 1 69 0 293 299 95 0 chr11 99515797 99515944 -51267609 + L1M4 LINE L1 3407 3567 -2579 1595 127 19 0 chr11 99516367 99516634 -51266919 + L1MA3 LINE L1 6033 6304 -1 90 55 0 0 chr11 99517361 99517507 -51266046 + AT_rich Low_complexity Low_complexity 1 146 0 7674 137 19 13 chr11 99518013 99519326 -51264227 - L1P LINE L1 -3084 3062 1742 13999 129 11 3 chr11 99519351 99522390 -51261163 + L1PA8A LINE L1 3051 6115 -16 575 315 90 49 chr11 99522625 99523159 -51260394 + L1MC4a LINE L1 5371 5926 -1882 225 254 0 0 chr11 99523807 99523862 -51259691 + (TGAA)n Simple_repeat Simple_repeat 4 58 0 234 277 134 18 chr11 99523941 99524053 -51259500 + L1ME LINE L1 5535 5659 -462 252 0 0 0 chr11 99524209 99524237 -51259316 + (TCTCCC)n Simple_repeat Simple_repeat 4 31 0 4877 23 1 0 chr11 99524237 99525193 -51258360 + SVA Other Other 54 1413 0 22 35 0 0 chr11 99526364 99526393 -51257160 + AT_rich Low_complexity Low_complexity 1 29 0 183 42 0 0 chr11 99526608 99526632 -51256921 + (TA)n Simple_repeat Simple_repeat 1 24 0 351 0 0 0 chr11 99527231 99527270 -51256283 + (TA)n Simple_repeat Simple_repeat 2 40 0 265 309 34 87 chr11 99528555 99528704 -51254849 + MIR SINE MIR 3 143 -119 306 247 13 0 chr11 99528785 99528862 -51254691 - MER58B DNA MER1_type -11 330 253 391 341 107 42 chr11 99528913 99529139 -51254414 - LTR67 LTR ERVL -70 487 277 1652 180 11 62 chr11 99529139 99529494 -51254059 + MER1B DNA MER1_type 1 337 0 391 341 107 42 chr11 99529494 99529716 -51253837 - LTR67 LTR ERVL -280 277 10 429 267 235 28 chr11 99530442 99530900 -51252653 + L2 LINE L2 2717 3309 -4 258 352 46 26 chr11 99532993 99533161 -51250392 + MIR SINE MIR 5 172 -72 278 26 26 0 chr11 99533255 99533294 -51250259 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 3299 49 0 0 chr11 99533466 99533876 -51249677 + L1PA4 LINE L1 4499 4908 -1238 5832 27 4 0 chr11 99533879 99534607 -51248946 + L1PA4 LINE L1 5454 6184 0 897 44 9 0 chr11 99534607 99534720 -51248833 - L1P LINE L1 -1145 5001 4888 229 289 13 0 chr11 99535503 99535579 -51247974 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 21 0 0 0 chr11 99535752 99535773 -51247780 + AT_rich Low_complexity Low_complexity 1 21 0 395 301 15 29 chr11 99537743 99537879 -51245674 - MIR SINE MIR -75 187 54 741 209 0 0 chr11 99539733 99539872 -51243681 + MER5A DNA MER1_type 45 183 -6 652 290 86 22 chr11 99540055 99540324 -51243229 + L2 LINE L2 3028 3313 0 272 409 8 0 chr11 99540460 99540587 -51242966 - L2 LINE L2 -654 2660 2533 473 156 0 11 chr11 99540742 99540832 -51242721 + MER53 DNA DNA 94 182 -7 * 526 100 0 0 chr11 99540756 99540836 -51242717 - MER53 DNA DNA -97 92 13 202 317 42 33 chr11 99541388 99541508 -51242045 - MIR SINE MIR -114 148 28 2096 149 8 8 chr11 99544136 99544491 -51239062 + THE1A LTR MaLR 1 355 0 10618 116 11 2 chr11 99544491 99546056 -51237497 + THE1A-int LTR MaLR 1 1580 0 2193 112 26 9 chr11 99546056 99546404 -51237149 + THE1A LTR MaLR 1 354 -1 604 24 12 12 chr11 99546404 99546487 -51237066 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 2087 120 153 6 chr11 99546656 99547015 -51236538 + MSTA LTR MaLR 1 412 -16 28 86 0 0 chr11 99547079 99547149 -51236404 + AT_rich Low_complexity Low_complexity 1 70 0 368 169 0 0 chr11 99548527 99548586 -51234967 - L1 LINE L1 -1179 4967 4909 * 1663 157 36 9 chr11 99548583 99548920 -51234633 - L1 LINE L1 -1480 4666 4321 503 325 113 45 chr11 99549324 99549470 -51234083 - L2 LINE L2 -389 2925 2790 1328 206 62 24 chr11 99549470 99549843 -51233710 + MLT1B LTR MaLR 1 387 -3 503 325 113 45 chr11 99549843 99550247 -51233306 - L2 LINE L2 -524 2790 2338 330 358 70 37 chr11 99552225 99552475 -51231078 - L1ME4a LINE L1 -196 5925 5656 2337 78 0 19 chr11 99552475 99552782 -51230771 - AluY SINE Alu -10 301 1 330 358 70 37 chr11 99552782 99552933 -51230620 - L1ME4a LINE L1 -465 5656 5511 39 0 0 0 chr11 99553113 99553152 -51230401 + AT_rich Low_complexity Low_complexity 1 39 0 186 103 0 0 chr11 99553659 99553688 -51229865 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2299 42 56 3 chr11 99554040 99554328 -51229225 - AluY SINE Alu -8 303 1 23 0 0 0 chr11 99555258 99555281 -51228272 + AT_rich Low_complexity Low_complexity 1 23 0 396 0 0 0 chr11 99555467 99555511 -51228042 + (CA)n Simple_repeat Simple_repeat 2 45 0 27 0 0 0 chr11 99556166 99556193 -51227360 + AT_rich Low_complexity Low_complexity 1 27 0 7167 46 1 1 chr11 99556251 99557560 -51225993 + L1PA5 LINE L1 4840 6148 -6 206 79 26 26 chr11 99557690 99557728 -51225825 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 269 148 0 19 chr11 99557728 99557782 -51225771 + (TCCCC)n Simple_repeat Simple_repeat 5 57 0 202 125 0 25 chr11 99557783 99557823 -51225730 + (CTTG)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr11 99557950 99557973 -51225580 + AT_rich Low_complexity Low_complexity 1 23 0 31 0 0 0 chr11 99559693 99559724 -51223829 + AT_rich Low_complexity Low_complexity 1 31 0 291 351 105 0 chr11 99559942 99560113 -51223440 - MIR SINE MIR -13 249 61 23 33 0 0 chr11 99560917 99560947 -51222606 + AT_rich Low_complexity Low_complexity 1 30 0 2298 93 3 3 chr11 99561321 99561621 -51221932 + AluSc SINE Alu 1 300 -9 741 318 181 4 chr11 99561725 99562210 -51221343 - L3 LINE CR1 -279 1298 728 2971 156 49 12 chr11 99562360 99562867 -51220686 + MER1A DNA MER1_type 2 527 0 183 315 27 14 chr11 99562912 99562985 -51220568 - L3 LINE CR1 -1078 499 426 1601 186 24 0 chr11 99563122 99563413 -51220140 - AluJo SINE Alu -14 298 1 202 301 60 12 chr11 99563427 99563510 -51220043 - L3 LINE CR1 -1293 284 198 * 216 289 145 57 chr11 99563476 99563635 -51219918 + MIR SINE MIR 49 221 -41 26 0 0 0 chr11 99563716 99563742 -51219811 + AT_rich Low_complexity Low_complexity 1 26 0 438 274 46 91 chr11 99564274 99564404 -51219149 - MIR SINE MIR -10 252 136 1131 250 108 40 chr11 99564404 99564828 -51218725 + MSTB2 LTR MaLR 3 455 -2 438 274 46 91 chr11 99564828 99564938 -51218615 - MIR SINE MIR -126 136 23 182 310 29 86 chr11 99565023 99565099 -51218454 - L2 LINE L2 -927 2387 2308 488 148 269 0 chr11 99565099 99565248 -51218305 + MER53 DNA DNA 1 189 0 182 310 29 86 chr11 99565248 99565345 -51218208 - L2 LINE L2 -1006 2308 2224 180 278 28 69 chr11 99565373 99565445 -51218108 - L2 LINE L2 -31 3241 3173 29 28 0 0 chr11 99566037 99566073 -51217480 + AT_rich Low_complexity Low_complexity 1 36 0 321 26 0 0 chr11 99566885 99566923 -51216630 + (GA)n Simple_repeat Simple_repeat 1 38 0 263 303 34 11 chr11 99566929 99567018 -51216535 - MIR SINE MIR -82 180 90 1979 158 27 3 chr11 99567021 99567351 -51216202 - MER7A DNA MER2_type -1 345 10 203 224 20 0 chr11 99567545 99567594 -51215959 + (TA)n Simple_repeat Simple_repeat 2 51 0 229 98 0 0 chr11 99569365 99569406 -51214147 + LTR66 LTR ERVL 398 438 -172 263 143 0 18 chr11 99569413 99569469 -51214084 + (TA)n Simple_repeat Simple_repeat 1 55 0 1977 192 9 0 chr11 99569498 99569837 -51213716 - MER7A DNA MER2_type -5 341 2 336 248 0 0 chr11 99570032 99570133 -51213420 + (TA)n Simple_repeat Simple_repeat 1 101 0 1433 222 122 21 chr11 99570133 99570150 -51213403 - MLT2B1 LTR ERVL -40 480 466 195 42 0 0 chr11 99570150 99570174 -51213379 + (GA)n Simple_repeat Simple_repeat 1 24 0 1433 222 122 21 chr11 99570174 99570589 -51212964 - MLT2B1 LTR ERVL -54 466 4 193 355 29 22 chr11 99570622 99570760 -51212793 + L2 LINE L2 2436 2574 -740 26 0 0 0 chr11 99571837 99571863 -51211690 + AT_rich Low_complexity Low_complexity 1 26 0 208 350 75 33 chr11 99572229 99572349 -51211204 - MIR SINE MIR -56 152 28 587 232 119 24 chr11 99572382 99572550 -51211003 + MER5A DNA MER1_type 6 189 0 183 279 89 38 chr11 99572624 99572703 -51210850 - MIR SINE MIR -94 168 86 5598 167 22 14 chr11 99573640 99574600 -51208953 - L1PA16 LINE L1 -9 6157 5176 180 0 0 0 chr11 99574600 99574620 -51208933 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 5598 167 22 14 chr11 99574620 99575296 -51208257 - L1PA16 LINE L1 -990 5176 4507 942 110 11 22 chr11 99575490 99575672 -51207881 + (TA)n Simple_repeat Simple_repeat 1 180 0 253 289 0 12 chr11 99575679 99575762 -51207791 + L1MC4 LINE L1 6614 6695 -1347 192 77 0 0 chr11 99575762 99575788 -51207765 + (TG)n Simple_repeat Simple_repeat 2 27 0 1267 231 24 21 chr11 99577992 99578364 -51205189 - L1 LINE L1 -1646 4500 4128 369 313 15 0 chr11 99578357 99578488 -51205065 + L1P LINE L1 2510 2642 -3504 * 286 318 31 114 chr11 99578911 99579298 -51204255 - L2 LINE L2 0 3272 2918 187 271 144 51 chr11 99579458 99579576 -51203977 + L2 LINE L2 100 228 -3086 766 233 76 40 chr11 99579742 99580043 -51203510 - L1M4 LINE L1 -1234 5410 5099 * 3417 163 46 51 chr11 99580037 99580816 -51202737 + L1MA6 LINE L1 5521 6295 -5 598 218 42 45 chr11 99580894 99581150 -51202403 - L1M4 LINE L1 -1651 4993 4737 2773 262 20 42 chr11 99581156 99582012 -51201541 - L1M4 LINE L1 -5629 913 77 3395 213 41 12 chr11 99582284 99583121 -51200432 - L1MB4 LINE L1 -5 6175 5315 2643 171 17 42 chr11 99583121 99583716 -51199837 - L1MA7 LINE L1 0 6291 5712 684 144 32 0 chr11 99583721 99583846 -51199707 - AluSq SINE Alu -21 292 164 1204 92 18 6 chr11 99583958 99584122 -51199431 - AluSq SINE Alu -147 166 1 7491 200 57 24 chr11 99584123 99585921 -51197632 - L1MA7 LINE L1 -572 5719 3982 1243 215 139 3 chr11 99585921 99586274 -51197279 - MER57A LTR ERV1 -2 401 1 7491 200 57 24 chr11 99586274 99586670 -51196883 - L1MA7 LINE L1 -2309 3982 3431 1764 114 92 7 chr11 99586670 99586951 -51196602 - AluSx SINE Alu -7 305 1 7491 200 57 24 chr11 99586951 99587075 -51196478 - L1MA7 LINE L1 -2860 3431 3313 810 189 8 60 chr11 99587075 99587324 -51196229 - L1MB4 LINE L1 -815 5331 5096 1214 285 14 14 chr11 99587389 99587747 -51195806 - L1M4c LINE L1 -5996 388 31 21 57 0 0 chr11 99587926 99587961 -51195592 + AT_rich Low_complexity Low_complexity 1 35 0 1872 75 12 0 chr11 99589326 99589578 -51193975 + L1PA5 LINE L1 5892 6146 -8 273 303 45 66 chr11 99591780 99591978 -51191575 + MIR3 SINE MIR 14 207 -1 186 71 0 0 chr11 99592618 99592646 -51190907 + (A)n Simple_repeat Simple_repeat 1 28 0 815 49 0 0 chr11 99593077 99593179 -51190374 + L1PA4 LINE L1 6049 6150 -5 1742 298 85 88 chr11 99593185 99593327 -51190226 + L2 LINE L2 1796 1937 -1377 338 221 13 0 chr11 99593327 99593404 -51190149 + MER116 DNA Mariner 1 78 -2 1742 298 85 88 chr11 99593404 99594353 -51189200 + L2 LINE L2 1937 2884 -430 262 240 0 0 chr11 99594400 99594450 -51189103 + MER5B DNA MER1_type 4 53 -125 349 342 118 0 chr11 99594454 99594606 -51188947 + L2 LINE L2 2892 3061 -252 870 238 115 12 chr11 99594884 99595136 -51188417 + LTR16C LTR ERVL 214 491 0 387 286 0 20 chr11 99595162 99595260 -51188293 + L2 LINE L2 3210 3305 -8 234 62 0 0 chr11 99596620 99596652 -51186901 + (CA)n Simple_repeat Simple_repeat 2 33 0 481 345 112 23 chr11 99597087 99597481 -51186072 - MLT1K LTR MaLR 0 588 160 1637 172 26 0 chr11 99597771 99598039 -51185514 + AluSx SINE Alu 2 276 -36 250 339 60 24 chr11 99598263 99598431 -51185122 + LTR67 LTR ERVL 6 179 -378 396 254 9 0 chr11 99598876 99598990 -51184563 + L1MC3 LINE L1 7669 7783 -2 301 154 62 15 chr11 99598994 99599059 -51184494 + HsTC2 DNA Tc2 1724 1791 -107 368 261 171 24 chr11 99599635 99599846 -51183707 - L1ME3 LINE L1 -9 6153 5912 * 3421 262 94 57 chr11 99599842 99600544 -51183009 + L1M4 LINE L1 2590 3264 -2882 2344 97 0 0 chr11 99600544 99600855 -51182698 + AluY SINE Alu 1 311 0 3421 262 94 57 chr11 99600855 99602435 -51181118 + L1M4 LINE L1 3264 4957 -1189 602 201 48 104 chr11 99602442 99602688 -51180865 + MLT1E2 LTR MaLR 4 241 -264 463 171 0 17 chr11 99602702 99602819 -51180734 + GA-rich Low_complexity Low_complexity 2 116 0 35 24 0 0 chr11 99603067 99603109 -51180444 + AT_rich Low_complexity Low_complexity 1 42 0 9433 158 32 13 chr11 99603312 99604962 -51178591 - Tigger1 DNA MER2_type 0 2418 737 685 270 21 83 chr11 99604991 99605317 -51178236 + LTR41 LTR ERVL 462 767 -6 326 248 120 0 chr11 99605338 99605492 -51178061 - L1ME3 LINE L1 -325 5796 5631 2480 189 17 142 chr11 99605536 99606240 -51177313 + MER4E LTR ERV1 1 575 -204 2032 150 49 0 chr11 99606240 99606587 -51176966 - THE1B LTR MaLR 0 364 1 2480 189 17 142 chr11 99606587 99606764 -51176789 + MER4E LTR ERV1 575 772 -7 1583 228 19 34 chr11 99606772 99607150 -51176403 - MLT1B LTR MaLR -18 372 1 21 0 0 0 chr11 99607153 99607174 -51176379 + AT_rich Low_complexity Low_complexity 1 21 0 256 250 44 15 chr11 99608999 99609130 -51174423 - L1MCa LINE L1 -1339 6983 2006 238 275 0 22 chr11 99609113 99609204 -51174349 + L1MC4 LINE L1 6615 6703 -1339 * 300 222 0 0 chr11 99609204 99609276 -51174277 + (CATA)n Simple_repeat Simple_repeat 4 75 0 252 215 0 43 chr11 99609277 99609370 -51174183 - L1MC4 LINE L1 -1340 6702 6614 189 107 0 0 chr11 99609373 99609401 -51174152 + (TA)n Simple_repeat Simple_repeat 1 28 0 340 228 89 0 chr11 99611168 99611269 -51172284 - MER5C DNA MER1_type -7 317 208 3366 216 90 23 chr11 99611753 99612477 -51171076 - L1MC1 LINE L1 -227 6342 5669 2134 111 7 13 chr11 99612477 99612783 -51170770 - AluSg SINE Alu -6 304 1 3366 216 90 23 chr11 99612783 99613373 -51170180 - L1MC1 LINE L1 -900 5669 4931 909 224 48 19 chr11 99613383 99613736 -51169817 - L1MC1 LINE L1 -3886 2498 2178 1643 175 175 6 chr11 99613736 99614102 -51169451 - MSTA LTR MaLR 0 428 1 6312 218 23 7 chr11 99614111 99615453 -51168100 - MSTA-int LTR MaLR -6 1645 203 330 251 25 43 chr11 99615454 99615617 -51167936 + L1M4c LINE L1 1460 1619 -4765 29 28 0 0 chr11 99616930 99616966 -51166587 + AT_rich Low_complexity Low_complexity 1 36 0 310 50 0 0 chr11 99616966 99617006 -51166547 - MADE1 DNA Mariner -4 76 37 204 57 0 94 chr11 99617007 99617060 -51166493 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 204 179 0 0 chr11 99617071 99617110 -51166443 + (TG)n Simple_repeat Simple_repeat 1 39 0 499 294 66 25 chr11 99619273 99619470 -51164083 - L2 LINE L2 -8 3305 3101 201 132 0 0 chr11 99619704 99619742 -51163811 + (CA)n Simple_repeat Simple_repeat 2 39 0 5976 152 57 22 chr11 99621147 99622336 -51161217 - Tigger3b DNA MER2_type 0 1231 1 28 79 0 0 chr11 99623364 99623427 -51160126 + AT_rich Low_complexity Low_complexity 1 63 0 447 368 34 13 chr11 99623569 99623808 -51159745 + MIR SINE MIR 19 262 0 1226 40 7 0 chr11 99623918 99624070 -51159483 - L1PA4 LINE L1 -8 6147 5995 5331 22 0 0 chr11 99624070 99624692 -51158861 + L1PA4 LINE L1 5358 5979 -176 304 284 32 0 chr11 99624702 99624797 -51158756 - MIR SINE MIR -73 189 92 220 229 16 16 chr11 99625437 99625498 -51158055 + MIR SINE MIR 2 62 -200 283 333 0 11 chr11 99625530 99625620 -51157933 + MIR SINE MIR 150 238 -24 202 259 17 17 chr11 99626752 99626810 -51156743 + L2 LINE L2 3210 3267 -5 627 327 40 9 chr11 99629999 99630225 -51153328 - MIR SINE MIR -2 260 28 486 258 8 0 chr11 99731628 99731756 -51051797 - MER5A DNA MER1_type -55 134 6 1907 96 54 11 chr11 99733209 99733489 -51050064 + AluSp SINE Alu 1 292 -21 39371 65 5 1 chr11 99734891 99741006 -51042547 + L1PA5 LINE L1 11 6152 -2 22 35 0 0 chr11 99741266 99741295 -51042258 + AT_rich Low_complexity Low_complexity 1 29 0 1198 225 14 14 chr11 99741350 99741643 -51041910 - AluJo SINE Alu -7 295 3 364 292 105 13 chr11 99741828 99742373 -51041180 - L1ME3A LINE L1 -303 5866 5267 2417 54 0 0 chr11 99745571 99745867 -51037686 + AluY SINE Alu 1 296 -15 310 378 88 0 chr11 99747469 99747662 -51035891 + L2 LINE L2 2756 2965 -349 471 157 0 0 chr11 99747668 99747757 -51035796 + (CATA)n Simple_repeat Simple_repeat 2 90 0 308 356 30 63 chr11 99747793 99748124 -51035429 + L2 LINE L2 2994 3313 0 441 99 33 55 chr11 99750059 99750150 -51033403 + L1PA10 LINE L1 6077 6165 -3 917 234 17 17 chr11 99750387 99750626 -51032927 + MLT2B3 LTR ERVL 1 239 -315 441 326 0 0 chr11 99750624 99750753 -51032800 + MLT2B3 LTR ERVL 375 503 -51 * 1512 161 37 28 chr11 99750765 99750816 -51032737 - MER7A DNA MER2_type -2693 345 296 1867 160 3 10 chr11 99750816 99751129 -51032424 - AluSx SINE Alu -1 311 1 1512 161 37 28 chr11 99751129 99751400 -51032153 - MER7A DNA MER2_type -2742 296 22 279 96 101 4 chr11 99751401 99751471 -51032082 + MLT2B1 LTR ERVL 440 520 0 202 229 29 29 chr11 99751907 99751977 -51031576 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 1125 227 67 25 chr11 99752662 99752944 -51030609 - AluJo SINE Alu -7 295 2 335 265 29 10 chr11 99753174 99753276 -51030277 + MER82 DNA MER2_type 549 652 -1 21 0 0 0 chr11 99753316 99753337 -51030216 + AT_rich Low_complexity Low_complexity 1 21 0 311 162 8 120 chr11 99753453 99753570 -51029983 - MLT2F LTR ERVL -4 659 556 349 294 72 7 chr11 99753729 99753882 -51029671 - MLT1E3 LTR MaLR -416 208 46 24 0 0 0 chr11 99754909 99754933 -51028620 + AT_rich Low_complexity Low_complexity 1 24 0 2258 76 0 13 chr11 99755390 99755692 -51027861 - AluY SINE Alu -13 298 1 1464 219 20 0 chr11 99756025 99756331 -51027222 - AluJo SINE Alu 0 312 1 1068 175 27 0 chr11 99756897 99757120 -51026433 - Tigger4(Zombi) DNA MER2_type 0 2731 2503 995 222 115 4 chr11 99757114 99757366 -51026187 - Tigger4(Zombi) DNA MER2_type -2451 280 1 * 21 0 0 0 chr11 99757769 99757790 -51025763 + AT_rich Low_complexity Low_complexity 1 21 0 1562 191 29 0 chr11 99758729 99759037 -51024516 + AluSx SINE Alu 3 318 0 1334 117 183 0 chr11 99759193 99759406 -51024147 + AluSq SINE Alu 9 260 -53 21 0 0 0 chr11 99759709 99759730 -51023823 + AT_rich Low_complexity Low_complexity 1 21 0 1092 227 57 0 chr11 99759967 99760231 -51023322 + AluJb SINE Alu 12 290 -22 329 139 109 0 chr11 99760234 99760335 -51023218 + Charlie5 DNA MER1_type 2394 2505 -107 352 278 24 24 chr11 99760421 99760547 -51023006 + L1M4 LINE L1 2920 3045 -3101 241 313 83 23 chr11 99760560 99761077 -51022476 + L1M4 LINE L1 3087 3634 -2512 1136 240 30 20 chr11 99761084 99761384 -51022169 - AluJo SINE Alu 0 312 10 270 326 82 52 chr11 99761893 99762126 -51021427 + L2 LINE L2 2807 3046 -226 1295 216 4 14 chr11 99763078 99763356 -51020197 - AluJo SINE Alu -15 297 23 2366 222 2 24 chr11 99763559 99764180 -51019373 - L1 LINE L1 -801 5345 4739 412 353 78 55 chr11 99866979 99867637 -50915916 + HAL1 LINE L1 315 987 -1520 627 289 141 27 chr11 99867789 99868194 -50915359 + HAL1 LINE L1 1180 1630 -877 22 0 0 0 chr11 99871051 99871073 -50912480 + AT_rich Low_complexity Low_complexity 1 22 0 375 193 0 0 chr11 99871903 99871986 -50911567 + (TA)n Simple_repeat Simple_repeat 2 84 0 234 193 0 35 chr11 99871988 99872045 -50911508 + GA-rich Low_complexity Low_complexity 4 58 0 901 68 0 15 chr11 99872045 99872177 -50911376 + (GAA)n Simple_repeat Simple_repeat 1 130 0 334 143 0 0 chr11 99872192 99872248 -50911305 - MLT2B3 LTR ERVL -53 501 446 2179 148 66 5 chr11 99872252 99872645 -50910908 - MSTB LTR MaLR -9 417 1 1664 222 13 29 chr11 99872645 99873026 -50910527 - MLT2B3 LTR ERVL -104 450 76 392 130 0 0 chr11 99873123 99873192 -50910361 - MLT2B3 LTR ERVL -483 71 3 250 208 56 28 chr11 99873350 99873384 -50910169 + CT-rich Low_complexity Low_complexity 4 36 -41 1143 255 10 39 chr11 99873384 99873792 -50909761 - MLT2C1 LTR ERVL -1 396 1 250 208 56 28 chr11 99873792 99873829 -50909724 + CT-rich Low_complexity Low_complexity 36 77 0 1147 163 29 4 chr11 99873839 99874079 -50909474 - MER46B DNA MER2_type -1 235 115 3885 126 117 127 chr11 99874098 99875597 -50907956 + pTR5 LTR ERV1 742 2438 0 441 152 112 88 chr11 99875603 99875728 -50907825 - MER46B DNA MER2_type -233 128 1 369 216 0 0 chr11 99876081 99876169 -50907384 + (TG)n Simple_repeat Simple_repeat 1 88 0 1675 254 234 18 chr11 99876169 99877004 -50906549 + L1MC4 LINE L1 6617 7631 -411 396 327 109 12 chr11 99877258 99877423 -50906130 - MER5A DNA MER1_type 0 189 9 225 0 0 0 chr11 99878303 99878328 -50905225 + (CA)n Simple_repeat Simple_repeat 1 25 0 2103 180 64 5 chr11 99878833 99879221 -50904332 + MSTB LTR MaLR 1 411 -15 994 149 5 40 chr11 99879234 99879435 -50904118 + MSTB-int LTR MaLR 1 194 -1457 509 202 10 19 chr11 99879859 99879963 -50903590 - MER58 DNA MER1_type 0 2420 2318 251 241 0 138 chr11 99879973 99880089 -50903464 - MER58 DNA MER1_type -2320 100 1 327 358 40 0 chr11 99880770 99880943 -50902610 - L1MC/D LINE L1 -2205 5603 5424 2285 46 3 0 chr11 99880962 99881247 -50902306 + L1PA5 LINE L1 5869 6154 0 532 327 73 68 chr11 99881762 99882555 -50900998 - L1MC/D LINE L1 -1825 4321 3521 2060 103 0 20 chr11 99882555 99882857 -50900696 - AluY SINE Alu -15 296 1 532 327 73 68 chr11 99882857 99882966 -50900587 - L1MC/D LINE L1 -2625 3521 3414 241 159 43 0 chr11 99882967 99883036 -50900517 + (TA)n Simple_repeat Simple_repeat 1 72 0 26 0 0 0 chr11 99883036 99883062 -50900491 + AT_rich Low_complexity Low_complexity 1 26 0 301 354 144 12 chr11 99883339 99883672 -50899881 + L1ME4a LINE L1 5506 5882 -239 28 48 0 0 chr11 99883779 99883821 -50899732 + AT_rich Low_complexity Low_complexity 1 42 0 24 85 0 0 chr11 99883834 99883893 -50899660 + AT_rich Low_complexity Low_complexity 1 59 0 1553 164 0 8 chr11 99885204 99885460 -50898093 + AluJb SINE Alu 39 292 -20 189 0 0 0 chr11 99886847 99886868 -50896685 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1652 234 6 3 chr11 99887673 99888037 -50895516 + MLT1A1 LTR MaLR 1 365 0 409 350 17 30 chr11 99888500 99888737 -50894816 - L2 LINE L2 -1 3312 3079 762 272 64 0 chr11 99888821 99889023 -50894530 + MIR SINE MIR 35 249 -13 192 388 0 0 chr11 99889156 99889241 -50894312 - MIR SINE MIR -6 256 172 251 250 0 0 chr11 99889279 99889327 -50894226 + L2 LINE L2 3146 3193 -79 1954 165 13 52 chr11 99889336 99889717 -50893836 + MLT2D LTR ERVL 1 366 -48 225 250 0 14 chr11 99889780 99889852 -50893701 - L1MC4 LINE L1 -1324 6718 6648 255 122 0 0 chr11 99889860 99889909 -50893644 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 303 128 21 0 chr11 99889916 99889963 -50893590 + MLT2D LTR ERVL 350 397 0 189 276 35 35 chr11 99889963 99890021 -50893532 + L2 LINE L2 3210 3267 -5 1656 194 3 3 chr11 99890731 99891035 -50892518 - AluJb SINE Alu -8 304 1 22 70 0 0 chr11 99891216 99891259 -50892294 + AT_rich Low_complexity Low_complexity 1 43 0 1192 246 46 12 chr11 99891677 99892006 -50891547 + MER58B DNA MER1_type 1 340 -1 21 0 0 0 chr11 99892498 99892519 -50891034 + AT_rich Low_complexity Low_complexity 1 21 0 256 282 148 31 chr11 99892696 99893082 -50890471 + L1MEc LINE L1 2381 2811 -4935 257 102 0 41 chr11 99893090 99893139 -50890414 + L1ME3A LINE L1 6124 6170 0 305 357 27 21 chr11 99893189 99893507 -50890046 + L1MEc LINE L1 2785 3291 -4275 258 323 78 27 chr11 99893531 99893943 -50889610 + L1MEc LINE L1 3228 3660 -4086 305 293 120 8 chr11 99894021 99894280 -50889273 + L1MEc LINE L1 3753 4040 -3525 22 0 0 0 chr11 99894708 99894730 -50888823 + AT_rich Low_complexity Low_complexity 1 22 0 434 319 144 18 chr11 99894746 99894975 -50888578 + MIR SINE MIR 5 262 0 1184 136 65 0 chr11 99896513 99896727 -50886826 - L1PA11 LINE L1 -5 6169 5942 244 219 9 105 chr11 99896916 99897030 -50886523 + MIR SINE MIR 134 236 -26 279 347 35 28 chr11 99897900 99898044 -50885509 + L3 LINE CR1 1081 1225 -352 489 197 68 0 chr11 99898484 99898601 -50884952 + L1MB8 LINE L1 87 211 -6648 2115 234 52 42 chr11 99898730 99899762 -50883791 + L1MB8 LINE L1 2639 3655 -3302 354 269 34 17 chr11 99899784 99899903 -50883650 + L1MB8 LINE L1 3926 4046 -2911 3307 245 65 32 chr11 99899905 99900895 -50882658 + L1MB8 LINE L1 4833 5961 -1028 2067 188 49 7 chr11 99900895 99901304 -50882249 + MSTB LTR MaLR 1 426 0 3307 245 65 32 chr11 99901304 99901656 -50881897 + L1MB8 LINE L1 5961 6300 -689 1362 155 136 31 chr11 99901654 99902008 -50881545 + L1MA8 LINE L1 5879 6269 -22 * 2238 195 128 25 chr11 99902043 99902670 -50880883 + L1MB8 LINE L1 6293 6983 -6 23 33 0 0 chr11 99902854 99902884 -50880669 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr11 99903607 99903629 -50879924 + AT_rich Low_complexity Low_complexity 1 22 0 322 323 88 42 chr11 99903629 99903821 -50879732 + L3 LINE CR1 1369 1569 -8 2890 3 0 0 chr11 99904092 99904407 -50879146 - AluYb8 SINE Alu -3 315 1 395 272 32 57 chr11 99904919 99905077 -50878476 - MIR SINE MIR -61 201 48 397 313 91 15 chr11 99906232 99906430 -50877123 + MIR SINE MIR 1 213 -49 373 307 71 31 chr11 99906524 99906591 -50876962 + MLT1J2 LTR MaLR 11 74 -376 1560 232 126 11 chr11 99906591 99907043 -50876510 + MLT1D LTR MaLR 1 504 -1 373 307 71 31 chr11 99907043 99907200 -50876353 + MLT1J2 LTR MaLR 74 244 -206 266 242 76 0 chr11 99909371 99909437 -50874116 - MIR SINE MIR -38 224 154 21 57 0 0 chr11 99911197 99911232 -50872321 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr11 99911376 99911407 -50872146 + AT_rich Low_complexity Low_complexity 1 31 0 193 349 72 0 chr11 99911628 99911711 -50871842 - L2 LINE L2 -4 3309 3221 700 323 78 51 chr11 99911847 99912323 -50871230 - L2 LINE L2 -297 3016 2527 198 353 82 12 chr11 99912488 99912573 -50870980 - MIR SINE MIR -152 110 20 517 330 44 5 chr11 99913750 99913797 -50869756 + MIR SINE MIR 28 72 -190 197 33 33 0 chr11 99913797 99913827 -50869726 + (TTA)n Simple_repeat Simple_repeat 3 33 0 7611 23 15 0 chr11 99913827 99914902 -50868651 - L1PA3 LINE L1 -18 6137 5058 517 330 44 5 chr11 99914902 99915059 -50868494 + MIR SINE MIR 71 241 -21 335 354 51 6 chr11 99916380 99916538 -50867015 - MIR SINE MIR -1 261 97 1799 174 127 38 chr11 99916561 99917033 -50866520 - MLT2B2 LTR ERVL 0 515 2 239 53 0 26 chr11 99917343 99917381 -50866172 + (CAA)n Simple_repeat Simple_repeat 2 38 0 341 259 56 102 chr11 99918449 99918715 -50864838 - MER112 DNA MER1_type -4 256 3 1282 187 56 130 chr11 99919101 99919492 -50864061 + MLT1A1 LTR MaLR 2 363 -2 23 0 0 0 chr11 99919492 99919515 -50864038 + AT_rich Low_complexity Low_complexity 1 23 0 302 366 45 8 chr11 99919715 99919849 -50863704 + L2 LINE L2 3124 3262 -10 2402 112 6 11 chr11 99920710 99921076 -50862477 - L1PB1 LINE L1 -5 6146 5783 189 0 0 0 chr11 99921100 99921121 -50862432 + (CA)n Simple_repeat Simple_repeat 2 22 0 617 145 53 38 chr11 99921133 99921264 -50862289 - L1PB1 LINE L1 -360 5791 5659 19641 64 11 6 chr11 99921275 99924701 -50858852 - L1PA6 LINE L1 -1 6153 2708 18747 108 7 7 chr11 99924811 99927539 -50856014 - L1PA6 LINE L1 -3405 2741 16 2537 103 30 0 chr11 99927530 99927927 -50855626 - L1PB1 LINE L1 -473 5678 5270 * 443 315 78 35 chr11 99928259 99928491 -50855062 - MIR SINE MIR -8 254 13 231 0 77 0 chr11 99930011 99930050 -50853503 + T-rich Low_complexity Low_complexity 6 47 0 316 224 147 26 chr11 99930133 99930249 -50853304 - MIR SINE MIR -70 192 63 225 0 0 0 chr11 99932049 99932074 -50851479 + (A)n Simple_repeat Simple_repeat 1 25 0 21 57 0 0 chr11 99932316 99932351 -50851202 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr11 99932439 99932466 -50851087 + AT_rich Low_complexity Low_complexity 1 27 0 262 336 192 0 chr11 99932563 99932688 -50850865 - L2 LINE L2 -5 3267 3119 311 0 26 0 chr11 99932885 99932924 -50850629 + (TG)n Simple_repeat Simple_repeat 2 41 0 237 183 0 0 chr11 99933135 99933195 -50850358 + (TG)n Simple_repeat Simple_repeat 1 60 0 4454 215 42 86 chr11 99933887 99935316 -50848237 - MLT1C-int LTR MaLR -5 1366 1 1433 230 46 39 chr11 99935316 99935729 -50847824 - MLT1C LTR MaLR 0 467 52 1850 244 60 11 chr11 99935791 99936410 -50847143 + L1MB8 LINE L1 4148 4796 -1350 223 161 36 0 chr11 99936486 99936542 -50847011 + (TA)n Simple_repeat Simple_repeat 2 59 0 3218 227 81 15 chr11 99936558 99936762 -50846791 + L1MB8 LINE L1 4780 4969 -1209 2236 56 0 21 chr11 99936762 99937072 -50846481 + AluY SINE Alu 1 304 0 3218 227 81 15 chr11 99937072 99938171 -50845382 + L1MB8 LINE L1 4969 6178 0 4454 256 45 40 chr11 99940020 99941828 -50841725 + L1PBa LINE L1 3 1644 -5219 368 280 0 21 chr11 99941869 99941962 -50841591 + L1MC4 LINE L1 6613 6703 -1339 11781 216 33 41 chr11 99941963 99945931 -50837622 + L1PB3 LINE L1 205 4331 -1880 189 0 0 0 chr11 99945931 99945952 -50837601 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 11781 216 33 41 chr11 99945952 99947816 -50835737 + L1PB3 LINE L1 4331 6209 -2 21 36 0 0 chr11 99947816 99947844 -50835709 + AT_rich Low_complexity Low_complexity 1 28 0 581 327 65 5 chr11 99947927 99948144 -50835409 - MIR SINE MIR -1 261 32 180 352 66 33 chr11 99948135 99948226 -50835327 - MIR SINE MIR -122 140 47 * 429 145 13 0 chr11 99948440 99948516 -50835037 - L1PA7 LINE L1 -8 6146 6070 2340 66 0 14 chr11 99949742 99950053 -50833500 - AluY SINE Alu 0 307 1 23 0 0 0 chr11 99950443 99950466 -50833087 + AT_rich Low_complexity Low_complexity 1 23 0 7522 32 8 0 chr11 99950466 99951808 -50831745 - L1PA3 LINE L1 -3 6152 4806 972 308 43 96 chr11 99952389 99953109 -50830444 + L2 LINE L2 897 1578 -1736 1383 317 54 14 chr11 99953212 99953836 -50829717 + L2 LINE L2 2419 3068 -245 386 314 9 0 chr11 99953851 99953956 -50829597 - MER81 DNA DNA -8 106 1 369 251 100 80 chr11 99953956 99954195 -50829358 + L2 LINE L2 3069 3312 -1 1898 164 57 11 chr11 99954520 99954891 -50828662 + MLT1B LTR MaLR 3 390 0 205 281 12 61 chr11 99955654 99955736 -50827817 - MIR SINE MIR -108 154 77 196 370 101 19 chr11 99956018 99956226 -50827327 - MIR SINE MIR -31 231 7 196 297 110 76 chr11 99957267 99957385 -50826168 + MIR SINE MIR 23 144 -118 272 261 191 9 chr11 99957580 99957695 -50825858 + MIR3 SINE MIR 7 142 -66 297 0 0 0 chr11 99957736 99957769 -50825784 + (CA)n Simple_repeat Simple_repeat 2 34 0 277 312 115 25 chr11 99958550 99958707 -50824846 - MIR SINE MIR -41 221 51 1014 290 118 5 chr11 99958787 99959187 -50824366 + L2 LINE L2 2233 2677 -637 925 316 114 38 chr11 99959232 99960348 -50823205 + L1MC4a LINE L1 5784 6984 -824 363 44 0 0 chr11 99960381 99960426 -50823127 + (TG)n Simple_repeat Simple_repeat 2 46 0 243 61 0 0 chr11 99960428 99960461 -50823092 + (GA)n Simple_repeat Simple_repeat 2 34 0 460 314 13 22 chr11 99960479 99960708 -50822845 + L1MC5 LINE L1 6994 7220 -741 432 317 105 41 chr11 99960870 99961309 -50822244 + L1MC5 LINE L1 7318 7784 -177 1966 145 0 0 chr11 99961311 99961593 -50821960 + AluJb SINE Alu 5 286 -26 40 37 0 0 chr11 99961593 99961647 -50821906 + AT_rich Low_complexity Low_complexity 1 54 0 331 218 5 31 chr11 99961663 99961780 -50821773 + L1MC5 LINE L1 7832 8041 -1 405 325 104 14 chr11 99961790 99962103 -50821450 + L2 LINE L2 2698 3039 -274 212 290 101 0 chr11 99964453 99964522 -50819031 + MIR SINE MIR 3 78 -184 26 23 0 23 chr11 99964534 99964558 -50818995 + AT_rich Low_complexity Low_complexity 1 25 -18 2297 87 3 3 chr11 99964558 99964869 -50818684 - AluY SINE Alu 0 311 1 26 23 0 23 chr11 99964869 99964888 -50818665 + AT_rich Low_complexity Low_complexity 25 43 0 1330 52 35 0 chr11 99964888 99965060 -50818493 - L1PA4 LINE L1 -3 6152 5975 1682 16 0 0 chr11 99965060 99965250 -50818303 + L1P2 LINE L1 5467 5656 -499 452 272 107 24 chr11 99965251 99965420 -50818133 + MIR SINE MIR 66 248 -14 3254 190 76 36 chr11 99965747 99966834 -50816719 - L1MB1 LINE L1 -19 6149 5016 384 366 43 5 chr11 99967995 99968208 -50815345 + MIR SINE MIR 30 248 -14 500 268 78 15 chr11 99969770 99969975 -50813578 - MLT1I LTR MaLR -188 221 4 530 86 12 0 chr11 99970128 99970209 -50813344 + (TA)n Simple_repeat Simple_repeat 2 83 0 1724 167 3 3 chr11 99970225 99970507 -50813046 + AluJb SINE Alu 14 295 -17 207 0 0 0 chr11 99970507 99970530 -50813023 + (TA)n Simple_repeat Simple_repeat 2 24 0 2045 164 16 11 chr11 99972615 99972988 -50810565 - THE1C LTR MaLR 0 375 1 702 202 11 79 chr11 99973098 99973276 -50810277 + MER5A DNA MER1_type 1 166 -23 1063 25 0 0 chr11 99973829 99973951 -50809602 - AluYb8 SINE Alu -2 316 195 227 242 182 23 chr11 99974152 99974284 -50809269 + MIR SINE MIR 34 186 -76 321 26 0 0 chr11 99975323 99975361 -50808192 + (TG)n Simple_repeat Simple_repeat 1 38 0 256 243 0 110 chr11 99975456 99975592 -50807961 - MLT1H LTR MaLR -5 544 424 697 281 31 22 chr11 99975735 99975959 -50807594 - MLT1H LTR MaLR -322 227 2 463 351 68 0 chr11 99976289 99976480 -50807073 + MIR SINE MIR 45 248 -14 434 266 108 14 chr11 99976633 99976772 -50806781 - L2 LINE L2 -2 3311 3160 22 0 0 0 chr11 99976787 99976809 -50806744 + AT_rich Low_complexity Low_complexity 1 22 0 531 0 0 0 chr11 99977015 99977074 -50806479 + (TA)n Simple_repeat Simple_repeat 2 60 0 207 0 0 0 chr11 99977113 99977136 -50806417 + (TA)n Simple_repeat Simple_repeat 1 23 0 181 283 19 0 chr11 99977964 99978017 -50805536 - MIR3 SINE MIR -7 201 148 2143 129 42 0 chr11 99978819 99979151 -50804402 + THE1C LTR MaLR 30 375 0 276 268 49 0 chr11 99979314 99979396 -50804157 - MIR SINE MIR -27 235 150 28 99 0 0 chr11 99979597 99979688 -50803865 + AT_rich Low_complexity Low_complexity 1 91 0 519 299 71 25 chr11 99979926 99980123 -50803430 + MIR SINE MIR 13 218 -44 322 297 76 22 chr11 99980571 99980847 -50802706 + L1ME2 LINE L1 5057 5347 -799 24 53 0 0 chr11 99981350 99981388 -50802165 + AT_rich Low_complexity Low_complexity 1 38 0 308 341 8 16 chr11 99981742 99981865 -50801688 - L1 LINE L1 -2377 3769 3648 1039 221 96 47 chr11 99981976 99982361 -50801192 + L1ME2 LINE L1 5760 6163 -1 2064 138 16 47 chr11 99982501 99982886 -50800667 - THE1C LTR MaLR -2 373 1 232 330 12 29 chr11 99983133 99983306 -50800247 - L1MEd LINE L1 -5939 180 11 1122 124 6 0 chr11 99983333 99983502 -50800051 - L1PA8 LINE L1 -1 6171 6002 1327 237 4 0 chr11 99983734 99983979 -50799574 + MER44D DNA MER2_type 2 247 -458 924 263 62 16 chr11 99984007 99984330 -50799223 - MER2 DNA MER2_type -5 340 3 1329 157 13 13 chr11 99984331 99984566 -50798987 + MER44D DNA MER2_type 316 605 0 376 341 103 3 chr11 99984705 99984995 -50798558 - L1MEd LINE L1 -5700 419 101 2414 215 27 39 chr11 99985177 99985323 -50798230 + MER39 LTR ERV1 1 147 -560 4125 66 6 2 chr11 99985323 99985871 -50797682 - L1PA8 LINE L1 -3 6169 5620 2414 215 27 39 chr11 99985871 99986310 -50797243 + MER39 LTR ERV1 147 579 -128 1609 224 31 122 chr11 99986311 99986984 -50796569 - LTR9 LTR ERV1 0 612 1 658 168 56 8 chr11 99986984 99987109 -50796444 + MER39 LTR ERV1 577 707 0 1124 318 150 39 chr11 99987116 99988124 -50795429 + L2 LINE L2 1911 3030 -242 290 281 113 25 chr11 99988411 99988571 -50794982 - MER20B DNA MER1_type -604 179 6 240 111 0 0 chr11 99988596 99988632 -50794921 + (A)n Simple_repeat Simple_repeat 1 36 0 215 355 96 35 chr11 99988891 99989088 -50794465 - L2 LINE L2 -219 3053 2845 321 353 0 37 chr11 99989320 99989456 -50794097 + MIR SINE MIR 15 145 -117 182 233 0 0 chr11 99990792 99990822 -50792731 - L2 LINE L2 -21 3292 3263 204 321 151 9 chr11 99990863 99990969 -50792584 - MIR SINE MIR -67 141 21 181 152 61 0 chr11 99990949 99990982 -50792571 - L3 LINE CR1 -687 890 856 * 194 262 60 48 chr11 99991185 99991269 -50792284 + L2 LINE L2 2078 2162 -1152 211 250 62 0 chr11 99991781 99991829 -50791724 + L2 LINE L2 3144 3194 -78 239 224 122 127 chr11 99992508 99992753 -50790800 + MLT1K LTR MaLR 328 571 -17 1726 224 13 82 chr11 99994888 99995414 -50788139 - MLT1D LTR MaLR -15 490 1 790 194 115 9 chr11 99995416 99995633 -50787920 + L1MC4 LINE L1 7178 7417 -625 452 289 87 23 chr11 99995627 99995845 -50787708 + L1MC4 LINE L1 7811 8042 0 * 5701 105 16 11 chr11 99995851 99996761 -50786792 + L1PB1 LINE L1 5237 6150 -1 845 320 43 45 chr11 99996922 99997435 -50786118 - L2 LINE L2 -1065 2249 1738 1186 242 82 38 chr11 99997435 99997803 -50785750 - MLT1B LTR MaLR -6 384 1 1691 325 104 33 chr11 99997843 99997872 -50785681 - L2 LINE L2 -1607 1707 1682 4029 64 0 0 chr11 99997872 99998388 -50785165 - L1PA8 LINE L1 -3 6169 5654 1691 325 104 33 chr11 99998388 99999645 -50783908 - L2 LINE L2 -1632 1682 329 276 330 23 41 chr11 99999950 100000171 -50783382 - L3 LINE CR1 -805 772 556 261 143 39 26 chr11 100001046 100001123 -50782430 + (TTATA)n Simple_repeat Simple_repeat 5 82 0 1114 306 59 61 chr11 100002227 100003221 -50780332 - L2 LINE L2 0 3313 2330 219 247 34 11 chr11 100003272 100003361 -50780192 + (TA)n Simple_repeat Simple_repeat 2 92 0 489 264 64 0 chr11 100003364 100003504 -50780049 - MER69A DNA AcHobo -3 174 26 2146 106 0 0 chr11 100004822 100005115 -50778438 - AluSg SINE Alu -17 293 1 6655 87 8 3 chr11 100005703 100006616 -50776937 - L1PA8 LINE L1 -2 6170 5254 5314 117 74 1 chr11 100006619 100007479 -50776074 + L1PA8 LINE L1 4330 5252 -894 225 196 0 0 chr11 100007515 100007566 -50775987 + (TA)n Simple_repeat Simple_repeat 2 52 0 271 242 11 22 chr11 100007574 100007665 -50775888 - L1MC4 LINE L1 -1339 6703 6614 360 0 0 0 chr11 100007668 100007708 -50775845 + (TA)n Simple_repeat Simple_repeat 2 41 0 952 63 337 29 chr11 100007708 100007883 -50775670 + L1P LINE L1 5024 5252 -894 240 256 0 33 chr11 100007894 100007984 -50775569 + L1MC4 LINE L1 6617 6703 -1339 * 270 270 11 11 chr11 100007940 100008029 -50775524 - L1MC4 LINE L1 -1339 6703 6615 242 256 13 0 chr11 100008022 100008100 -50775453 + L1MC4 LINE L1 6614 6692 -1350 * 219 368 26 34 chr11 100008127 100008244 -50775309 + L2 LINE L2 2901 3016 -256 400 204 106 49 chr11 100011427 100011569 -50771984 + L1ME1 LINE L1 1017 1166 -5374 661 283 23 0 chr11 100011571 100011748 -50771805 - MLT1B LTR MaLR 0 390 210 496 290 246 59 chr11 100011748 100012207 -50771346 - MER52A LTR ERV1 0 1755 1211 * 2053 221 30 21 chr11 100012190 100012838 -50770715 - LTR27 LTR ERV1 -141 495 1 741 207 41 89 chr11 100012838 100013060 -50770493 - MLT1B LTR MaLR -180 210 1 368 279 70 58 chr11 100013122 100013294 -50770259 + L1ME1 LINE L1 1311 1484 -5059 244 208 0 99 chr11 100013295 100013396 -50770157 + L1ME1 LINE L1 1510 1600 -4940 225 43 0 65 chr11 100013432 100013478 -50770075 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 5524 264 92 21 chr11 100013485 100016483 -50767070 + L1ME1 LINE L1 1749 4953 -1587 2001 153 0 0 chr11 100016494 100016801 -50766752 + AluSx SINE Alu 3 309 -3 419 207 0 18 chr11 100016860 100016971 -50766582 + (CATATA)n Simple_repeat Simple_repeat 6 114 0 1480 238 42 6 chr11 100016993 100017346 -50766207 - MLT2D LTR ERVL -46 368 3 2160 227 54 48 chr11 100017351 100017675 -50765878 + L1ME1 LINE L1 4958 5278 -1282 2293 67 7 3 chr11 100017675 100017973 -50765580 - AluY SINE Alu -12 299 1 2160 227 54 48 chr11 100017973 100018519 -50765034 + L1ME1 LINE L1 5278 5819 -741 1523 183 40 105 chr11 100018519 100018891 -50764662 - MER7A DNA MER2_type 0 346 1 282 237 144 58 chr11 100018896 100019035 -50764518 + L1ME1 LINE L1 5823 5973 -587 563 144 0 83 chr11 100019035 100019082 -50764471 - L1 LINE L1 -3717 2429 2380 2140 78 7 20 chr11 100019082 100019375 -50764178 - AluY SINE Alu -22 289 1 563 144 0 83 chr11 100019375 100019459 -50764094 - L1 LINE L1 -3766 2380 2309 10742 199 17 5 chr11 100019461 100019627 -50763926 + L1PB1 LINE L1 2826 2988 -3163 2468 118 6 6 chr11 100019627 100019991 -50763562 - THE1B LTR MaLR 0 364 1 10742 199 17 5 chr11 100019991 100022750 -50760803 + L1PB1 LINE L1 2988 5788 -363 2395 129 5 3 chr11 100022789 100023162 -50760391 + L1PB1 LINE L1 5773 6146 -5 1095 250 157 2 chr11 100023164 100023560 -50759993 + L1ME1 LINE L1 5956 6412 -148 285 224 26 13 chr11 100023572 100023648 -50759905 + L1ME1 LINE L1 6455 6531 -29 25 31 0 0 chr11 100023649 100023681 -50759872 + AT_rich Low_complexity Low_complexity 1 32 0 232 153 17 85 chr11 100023707 100023766 -50759787 - MER5B DNA MER1_type -73 105 51 430 294 29 35 chr11 100023949 100024119 -50759434 + MIR3 SINE MIR 30 198 -10 488 234 35 133 chr11 100024643 100024869 -50758684 + MER63A DNA MER1_type 7 210 0 317 293 153 13 chr11 100024939 100025096 -50758457 + L1MC4 LINE L1 5426 5604 -2204 453 278 94 25 chr11 100025127 100025372 -50758181 + L1MC4 LINE L1 7213 7474 -568 533 229 36 30 chr11 100025468 100025634 -50757919 + L1MC4 LINE L1 7771 7937 -105 22 99 0 0 chr11 100025732 100025803 -50757750 + AT_rich Low_complexity Low_complexity 1 71 0 2331 68 0 34 chr11 100026093 100026414 -50757139 - AluY SINE Alu -1 310 1 21 36 0 0 chr11 100026759 100026787 -50756766 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 100027198 100027219 -50756334 + AT_rich Low_complexity Low_complexity 1 21 0 323 346 83 10 chr11 100028385 100028590 -50754963 - MIR SINE MIR -22 240 21 201 269 128 13 chr11 100028743 100028821 -50754732 - MIR SINE MIR 0 262 176 623 321 92 12 chr11 100028836 100029163 -50754390 + LTR16A LTR ERVL 1 353 -97 231 154 0 0 chr11 100029266 100029305 -50754248 - MARNA DNA Mariner -144 442 404 342 311 107 8 chr11 100029446 100029568 -50753985 - L2 LINE L2 -1 3271 3138 6138 56 27 0 chr11 100029823 100029845 -50753708 - L1PA8A LINE L1 -2 6129 6109 189 0 0 0 chr11 100029845 100029866 -50753687 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6138 56 27 0 chr11 100029866 100030812 -50752741 - L1PA8A LINE L1 -22 6109 5162 472 174 41 0 chr11 100033336 100033457 -50750096 - L1MB2 LINE L1 -2 6169 6044 22019 192 24 23 chr11 100033457 100039865 -50743688 - L1PA11 LINE L1 -2 6487 8 2015 166 24 16 chr11 100039866 100039943 -50743610 - L1MB2 LINE L1 -108 6063 5988 1939 189 22 52 chr11 100039943 100040388 -50743165 - MSTB1 LTR MaLR 0 432 1 2015 166 24 16 chr11 100040388 100040683 -50742870 - L1MB2 LINE L1 -183 5988 5688 21 0 0 0 chr11 100040683 100040704 -50742849 + AT_rich Low_complexity Low_complexity 1 21 0 287 194 75 0 chr11 100040943 100041010 -50742543 + L1MA5 LINE L1 6074 6145 -155 307 24 0 0 chr11 100041021 100041062 -50742491 + L1MA5 LINE L1 6259 6299 -1 24 53 0 0 chr11 100041367 100041405 -50742148 + AT_rich Low_complexity Low_complexity 1 38 0 321 47 0 0 chr11 100042294 100042337 -50741216 + (TG)n Simple_repeat Simple_repeat 1 43 0 463 330 34 14 chr11 100042870 100043079 -50740474 - MIR SINE MIR -49 213 1 374 275 56 50 chr11 100043138 100043298 -50740255 - MIR SINE MIR -46 216 56 2312 95 3 3 chr11 100043502 100043808 -50739745 - AluSq SINE Alu -7 306 1 239 308 138 66 chr11 100045017 100045394 -50738159 + L2 LINE L2 2344 2747 -567 189 175 0 0 chr11 100045971 100046011 -50737542 + A-rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr11 100046175 100046203 -50737350 + AT_rich Low_complexity Low_complexity 1 28 0 1015 176 185 46 chr11 100046942 100047110 -50736443 - THE1C LTR MaLR 0 375 232 180 0 0 0 chr11 100047110 100047130 -50736423 + (GA)n Simple_repeat Simple_repeat 1 20 0 1015 176 185 46 chr11 100047130 100047290 -50736263 - THE1C LTR MaLR -143 232 1 9301 154 4 42 chr11 100047291 100047497 -50736056 - THE1B-int LTR MaLR -1 1579 1367 2204 133 19 27 chr11 100047497 100047864 -50735689 - THE1B LTR MaLR 0 364 1 9301 154 4 42 chr11 100047864 100049296 -50734257 - THE1B-int LTR MaLR -213 1367 3 1958 139 52 27 chr11 100049298 100049664 -50733889 - THE1C LTR MaLR 0 375 1 387 222 82 70 chr11 100050009 100050180 -50733373 - MLT1F LTR MaLR -4 538 366 210 299 45 15 chr11 100050424 100050491 -50733062 - MIR SINE MIR -112 96 28 429 294 0 0 chr11 100051167 100051286 -50732267 + L1PA12 LINE L1 1 119 -7462 2479 275 89 75 chr11 100051303 100052829 -50730724 + L1PA12 LINE L1 347 1894 -5687 5042 142 22 14 chr11 100052836 100053554 -50729999 + L1PA13 LINE L1 4631 5342 -821 2248 119 3 0 chr11 100053554 100053857 -50729696 + AluSp SINE Alu 1 304 -9 5042 142 22 14 chr11 100053857 100054682 -50728871 + L1PA13 LINE L1 5342 6160 -3 2285 61 0 0 chr11 100054711 100054990 -50728563 + AluY SINE Alu 29 307 -4 21 0 0 0 chr11 100055680 100055701 -50727852 + AT_rich Low_complexity Low_complexity 1 21 0 985 234 130 10 chr11 100058110 100058417 -50725136 + L1MD3 LINE L1 7628 7971 -24 2134 34 4 8 chr11 100058417 100058683 -50724870 + L1PA5 LINE L1 5889 6153 -1 860 252 18 5 chr11 100059293 100059511 -50724042 - MER58A DNA MER1_type 0 224 4 292 283 169 16 chr11 100059749 100059933 -50723620 + MIR SINE MIR 1 212 -50 1053 236 73 28 chr11 100060024 100060351 -50723202 - MER2 DNA MER2_type -2 342 1 361 282 36 89 chr11 100060545 100060793 -50722760 + L2 LINE L2 3079 3313 0 3741 268 44 27 chr11 100061133 100062663 -50720890 + L1MEc LINE L1 39 1763 -4633 271 324 63 9 chr11 100063643 100063754 -50719799 - L2 LINE L2 -2 3270 3154 907 251 143 3 chr11 100063863 100064205 -50719348 + MLT1B LTR MaLR 1 390 0 183 367 33 0 chr11 100064440 100064530 -50719023 - L2 LINE L2 -264 3008 2916 2434 105 28 25 chr11 100065240 100065603 -50717950 - THE1B LTR MaLR 0 364 1 248 204 19 0 chr11 100065706 100065760 -50717793 + (TA)n Simple_repeat Simple_repeat 1 55 0 24 32 0 0 chr11 100066223 100066254 -50717299 + AT_rich Low_complexity Low_complexity 1 31 0 1065 86 7 7 chr11 100066257 100066397 -50717156 + AluSq/x SINE Alu 4 143 -169 186 355 135 21 chr11 100067051 100067192 -50716361 - L2 LINE L2 -10 3262 3106 2127 130 0 0 chr11 100067679 100067980 -50715573 - AluSq SINE Alu -12 301 1 289 332 26 26 chr11 100068450 100068643 -50714910 - L1ME LINE L1 -404 5717 5525 227 200 20 0 chr11 100068825 100068875 -50714678 + L2 LINE L2 3221 3271 -1 25 65 0 0 chr11 100069012 100069058 -50714495 + AT_rich Low_complexity Low_complexity 1 46 0 1219 192 77 59 chr11 100069435 100069538 -50714015 - L1MA9 LINE L1 -40 6272 6172 222 118 0 0 chr11 100069538 100069572 -50713981 + (TG)n Simple_repeat Simple_repeat 1 34 0 1219 192 77 59 chr11 100069572 100069859 -50713694 - L1MA9 LINE L1 -140 6172 5875 461 280 107 7 chr11 100069860 100070010 -50713543 + MIR SINE MIR 73 237 -25 33 25 0 0 chr11 100070177 100070217 -50713336 + AT_rich Low_complexity Low_complexity 1 40 0 430 299 43 7 chr11 100070244 100070440 -50713113 - L1MC/D LINE L1 -334 5787 5614 2109 106 25 0 chr11 100070574 100070857 -50712696 - AluSc SINE Alu -19 290 1 311 271 62 16 chr11 100070870 100070999 -50712554 - L1MC/D LINE L1 -640 5481 5347 21 36 0 0 chr11 100071048 100071076 -50712477 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr11 100071247 100071278 -50712275 + AT_rich Low_complexity Low_complexity 1 31 0 1161 219 60 73 chr11 100071425 100071795 -50711758 + MLT1A1 LTR MaLR 1 365 0 310 324 45 9 chr11 100071980 100072091 -50711462 - L2 LINE L2 0 3313 3199 21 0 0 0 chr11 100072108 100072129 -50711424 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 100072555 100072583 -50710970 + AT_rich Low_complexity Low_complexity 1 28 0 300 336 18 36 chr11 100072863 100072973 -50710580 + MIR3 SINE MIR 9 116 -92 2469 68 0 10 chr11 100073077 100073386 -50710167 - AluY SINE Alu -5 306 1 415 245 38 57 chr11 100074441 100074600 -50708953 - MIR SINE MIR -11 251 96 732 186 0 8 chr11 100074603 100074732 -50708821 + AluJb SINE Alu 5 132 -180 2509 291 53 15 chr11 100075334 100076786 -50706767 - L1M3b LINE L1 -4812 1469 85 356 269 0 0 chr11 100076778 100076871 -50706682 - L1ME LINE L1 -538 5628 5536 * 2250 168 92 11 chr11 100076950 100077396 -50706157 + LTR64 LTR ERVK 1 482 -76 573 231 39 29 chr11 100077503 100077711 -50705842 - L1ME LINE L1 -1128 5018 4809 5626 116 16 3 chr11 100077711 100078817 -50704736 - L1PA13 LINE L1 -6 6157 5036 916 161 19 0 chr11 100078898 100079053 -50704500 - AluSg/x SINE Alu -3 307 150 22 56 0 0 chr11 100079071 100079107 -50704446 + AT_rich Low_complexity Low_complexity 1 36 0 624 289 6 0 chr11 100079112 100079278 -50704275 + MLT1F LTR MaLR 358 524 -18 3090 263 55 38 chr11 100079292 100080160 -50703393 + L1ME3A LINE L1 3981 4882 -1284 300 53 0 0 chr11 100080160 100080198 -50703355 + (CA)n Simple_repeat Simple_repeat 2 39 0 3090 263 55 38 chr11 100080198 100080807 -50702746 + L1ME3A LINE L1 4882 5479 -687 12068 241 24 16 chr11 100080809 100085562 -50697991 + L1PA15 LINE L1 1 5312 -1485 1432 171 35 2 chr11 100085565 100086585 -50696968 + L1PA15 LINE L1 5676 6815 -1 1265 263 99 47 chr11 100086624 100087217 -50696336 + L1ME3A LINE L1 5457 6080 -90 365 307 16 0 chr11 100087238 100087264 -50696289 - L1MA10 LINE L1 -15 6319 6294 767 237 55 135 chr11 100087264 100087555 -50695998 - L1ME2 LINE L1 -34 6130 5898 4021 37 19 2 chr11 100087555 100088037 -50695516 - LTR2B LTR ERV1 0 490 1 767 237 55 135 chr11 100088037 100088272 -50695281 - L1ME2 LINE L1 -266 5898 5646 30 27 0 0 chr11 100088330 100088367 -50695186 + AT_rich Low_complexity Low_complexity 1 37 0 819 333 28 0 chr11 100088619 100088901 -50694652 + MLT1H1 LTR MaLR 256 545 -10 25 31 0 0 chr11 100089015 100089047 -50694506 + AT_rich Low_complexity Low_complexity 1 32 0 13414 197 45 9 chr11 100089047 100090800 -50692753 - L1PB1 LINE L1 -4 6863 5174 2253 88 30 3 chr11 100090800 100091096 -50692457 - AluY SINE Alu -7 304 1 13414 197 45 9 chr11 100091096 100091945 -50691608 - L1PB1 LINE L1 -1693 5174 4357 2214 89 0 20 chr11 100091945 100092249 -50691304 - AluY SINE Alu -13 298 1 13414 197 45 9 chr11 100092249 100094749 -50688804 - L1PB1 LINE L1 -2510 4357 1583 1894 193 139 27 chr11 100094763 100095245 -50688308 - LTR10A LTR ERV1 -61 548 13 1328 241 96 14 chr11 100095254 100096580 -50686973 - L1PB1 LINE L1 -5278 1585 6 207 0 0 0 chr11 100096591 100096614 -50686939 + (TC)n Simple_repeat Simple_repeat 2 24 0 427 281 9 0 chr11 100096628 100096742 -50686811 - MER5B DNA MER1_type -52 126 12 238 343 53 60 chr11 100097377 100097642 -50685911 + L2 LINE L2 2437 2699 -615 560 283 148 14 chr11 100100064 100100287 -50683266 - MIR SINE MIR -2 260 8 4362 216 41 19 chr11 100100725 100101782 -50681771 - Tigger6a DNA MER2_type -1 1082 3 351 221 0 0 chr11 100101869 100101937 -50681616 - MER97a DNA MER1_type? -718 176 109 266 282 18 36 chr11 100102091 100102201 -50681352 + MIR SINE MIR 99 206 -56 218 411 22 11 chr11 100102210 100102395 -50681158 + MIR SINE MIR 7 193 -69 838 225 0 28 chr11 100102557 100102739 -50680814 + MER5A DNA MER1_type 13 189 0 263 246 0 0 chr11 100102753 100102810 -50680743 - MER5B DNA MER1_type -3 175 119 210 71 0 0 chr11 100103195 100103223 -50680330 + (T)n Simple_repeat Simple_repeat 1 28 0 1541 262 16 7 chr11 100103297 100103747 -50679806 + L1M4 LINE L1 3806 4259 -1887 1528 309 77 24 chr11 100103992 100104992 -50678561 + L1ME2 LINE L1 3503 4555 -1591 2001 153 0 0 chr11 100105007 100105314 -50678239 + AluSx SINE Alu 3 309 -3 419 207 0 18 chr11 100105373 100105484 -50678069 + (CATATA)n Simple_repeat Simple_repeat 6 114 0 1480 238 42 6 chr11 100105506 100105859 -50677694 - MLT2D LTR ERVL -46 368 3 838 256 65 25 chr11 100105864 100106188 -50677365 + L1ME2 LINE L1 4564 4900 -1246 2159 101 7 0 chr11 100106188 100106486 -50677067 - AluY SINE Alu -11 300 1 426 245 38 57 chr11 100107541 100107700 -50675853 - MIR SINE MIR -11 251 96 723 186 0 8 chr11 100107703 100107832 -50675721 + AluJb SINE Alu 5 132 -180 2541 302 50 11 chr11 100108434 100109886 -50673667 - L1M3b LINE L1 -4812 1469 85 365 269 0 0 chr11 100109878 100109971 -50673582 - L1ME LINE L1 -538 5628 5536 * 2248 168 92 11 chr11 100110050 100110496 -50673057 + LTR64 LTR ERVK 1 482 -76 472 343 86 28 chr11 100110768 100111607 -50671946 + L1ME2 LINE L1 4972 5882 -282 26 74 0 0 chr11 100111951 100112005 -50671548 + AT_rich Low_complexity Low_complexity 1 54 0 264 306 64 45 chr11 100112666 100112823 -50670730 - MIR3 SINE MIR -25 183 24 717 122 0 0 chr11 100113875 100113990 -50669563 + (GGAA)n Simple_repeat Simple_repeat 3 117 0 25 65 0 0 chr11 100114505 100114551 -50669002 + AT_rich Low_complexity Low_complexity 1 46 0 258 325 9 9 chr11 100114865 100114979 -50668574 + (TATG)n Simple_repeat Simple_repeat 3 116 0 3206 207 18 35 chr11 100115504 100116186 -50667367 - L1MC3 LINE L1 -193 7592 6923 1122 58 0 0 chr11 100116186 100116324 -50667229 - MER85 DNA T2_type -1 138 1 3206 207 18 35 chr11 100116324 100116409 -50667144 - L1MC3 LINE L1 -862 6923 6838 365 107 0 0 chr11 100116406 100116462 -50667091 - L1MC3 LINE L1 -1930 5855 5800 * 7434 34 0 0 chr11 100116464 100117505 -50666048 - L1PA4 LINE L1 -3 6152 5109 3357 34 2 0 chr11 100117505 100117912 -50665641 + L1PA4 LINE L1 4701 5108 -1038 804 169 71 54 chr11 100117905 100118089 -50665464 - L1MC3 LINE L1 -1974 5811 5625 * 23 68 0 0 chr11 100118463 100118507 -50665046 + AT_rich Low_complexity Low_complexity 1 44 0 1988 133 50 44 chr11 100118622 100118984 -50664569 - THE1B LTR MaLR 0 364 1 11130 102 17 0 chr11 100118984 100120537 -50663016 - THE1B-int LTR MaLR 0 1580 1 1968 140 44 47 chr11 100120537 100120902 -50662651 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 100121083 100121104 -50662449 + AT_rich Low_complexity Low_complexity 1 21 0 1078 169 0 0 chr11 100121167 100121345 -50662208 + MLT1B LTR MaLR 8 185 -205 347 169 0 0 chr11 100121377 100121436 -50662117 + MLT1B LTR MaLR 331 389 -1 276 310 72 78 chr11 100121844 100122088 -50661465 + MLT1I LTR MaLR 67 310 -99 1787 167 0 7 chr11 100122088 100122388 -50661165 + AluJo SINE Alu 14 311 -1 276 310 72 78 chr11 100122388 100122462 -50661091 + MLT1I LTR MaLR 310 383 -26 23 78 0 0 chr11 100122498 100122549 -50661004 + AT_rich Low_complexity Low_complexity 1 51 0 278 312 173 17 chr11 100122919 100123092 -50660461 - MIR SINE MIR -44 218 19 202 187 40 40 chr11 100123427 100123502 -50660051 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 28 48 0 0 chr11 100123877 100123919 -50659634 + AT_rich Low_complexity Low_complexity 1 42 0 1918 236 100 9 chr11 100123994 100124563 -50658990 + L1ME3A LINE L1 5539 6159 -11 294 29 0 0 chr11 100126484 100126519 -50657034 + (TG)n Simple_repeat Simple_repeat 1 35 0 222 346 47 19 chr11 100126668 100126775 -50656778 + MIR SINE MIR 73 182 -80 247 333 0 0 chr11 100127116 100127194 -50656359 + MIR SINE MIR 173 250 -12 230 316 10 0 chr11 100127947 100128033 -50655520 + MIR SINE MIR 65 143 -65 23 0 0 0 chr11 100128275 100128298 -50655255 + AT_rich Low_complexity Low_complexity 1 23 0 204 283 0 0 chr11 100128517 100128570 -50654983 + (CA)n Simple_repeat Simple_repeat 2 54 0 269 293 50 63 chr11 100129022 100129244 -50654309 - L2 LINE L2 -65 3248 3030 521 234 8 0 chr11 100129654 100129778 -50653775 - MER74A LTR ERVL -137 421 297 350 366 60 52 chr11 100129960 100130329 -50653224 + L2 LINE L2 2222 2593 -721 375 315 83 11 chr11 100130381 100130562 -50652991 + L2 LINE L2 2778 2971 -343 230 325 63 40 chr11 100130693 100130819 -50652734 - LTR16C LTR ERVL 0 491 363 535 202 16 0 chr11 100130819 100130948 -50652605 + GA-rich Low_complexity Low_complexity 3 133 0 399 369 78 14 chr11 100130955 100131248 -50652305 - LTR16C LTR ERVL -91 400 89 2517 50 3 9 chr11 100131508 100131831 -50651722 - L1PA5 LINE L1 -11 6143 5823 894 295 43 12 chr11 100132257 100132579 -50650974 - L1ME3 LINE L1 -333 5829 5498 741 291 77 24 chr11 100132766 100133299 -50650254 - L1ME3 LINE L1 -1186 4960 4400 245 279 101 0 chr11 100134433 100134512 -50649041 - L2 LINE L2 -705 2609 2523 255 401 22 0 chr11 100134713 100134850 -50648703 - L2 LINE L2 -729 2585 2446 334 319 30 36 chr11 100134896 100135062 -50648491 + L2 LINE L2 3149 3313 0 284 309 12 0 chr11 100135269 100135350 -50648203 - L2 LINE L2 -1 3312 3231 341 22 22 0 chr11 100137709 100137755 -50645798 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2040 95 28 3 chr11 100137757 100138042 -50645511 - AluY SINE Alu -19 292 1 2006 122 3 7 chr11 100138043 100138337 -50645216 - AluSg SINE Alu -17 293 1 4037 226 48 19 chr11 100139005 100139964 -50643589 + L1M1 LINE L1 4 990 -6575 6252 149 9 13 chr11 100139966 100141326 -50642227 + L1M1 LINE L1 2609 3966 -3599 11630 84 21 2 chr11 100241326 100242874 -50540679 - HERVL LTR ERVL -2840 2814 1238 388 276 109 25 chr11 100243516 100243755 -50539798 - HAL1 LINE L1 0 2507 2249 276 143 71 18 chr11 100243811 100243923 -50539630 + (TA)n Simple_repeat Simple_repeat 2 119 0 289 228 18 0 chr11 100244887 100244944 -50538609 - MLT1K LTR MaLR -2 586 529 772 176 0 8 chr11 100244945 100245076 -50538477 + FLAM_A SINE Alu 1 130 -3 369 314 157 15 chr11 100246401 100246605 -50536948 + MIR SINE MIR 6 238 -24 228 35 0 0 chr11 100247220 100247249 -50536304 + (GA)n Simple_repeat Simple_repeat 2 30 0 339 44 0 0 chr11 100247252 100247297 -50536256 + (CA)n Simple_repeat Simple_repeat 2 46 0 327 65 0 0 chr11 100247297 100247343 -50536210 + (GA)n Simple_repeat Simple_repeat 1 46 0 623 286 79 15 chr11 100247533 100247799 -50535754 - MER102b DNA MER1_type -16 325 43 341 197 0 28 chr11 100248274 100248345 -50535208 - L1 LINE L1 -2010 4136 4068 2230 113 13 0 chr11 100248377 100248678 -50534875 - AluSx SINE Alu -7 305 1 2076 184 2 30 chr11 100248680 100249109 -50534444 - L1 LINE L1 -2066 4080 3664 * 2443 218 34 29 chr11 100249108 100249683 -50533870 + L1MA7 LINE L1 2344 2924 -3222 1781 74 0 4 chr11 100249683 100249914 -50533639 + AluY SINE Alu 82 311 0 2443 218 34 29 chr11 100249914 100249990 -50533563 + L1MA7 LINE L1 2924 2998 -3148 659 272 32 97 chr11 100251100 100251655 -50531898 + L1MDb LINE L1 772 1290 -5119 3798 74 0 1 chr11 100252431 100253184 -50530369 - L1P3 LINE L1 -563 5609 4858 5722 193 39 20 chr11 100253190 100253231 -50530322 + L1MA7 LINE L1 3647 3686 -2460 182 36 0 36 chr11 100253231 100253259 -50530294 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5722 193 39 20 chr11 100253259 100253724 -50529829 + L1MA7 LINE L1 3686 4141 -2005 351 0 0 0 chr11 100253724 100253763 -50529790 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 5722 193 39 20 chr11 100253763 100254593 -50528960 + L1MA7 LINE L1 4141 5009 -1137 1881 180 36 57 chr11 100254599 100255022 -50528531 + L1MA7 LINE L1 5799 6212 -79 348 24 0 0 chr11 100255022 100255063 -50528490 + (TA)n Simple_repeat Simple_repeat 2 42 0 1881 180 36 57 chr11 100255063 100255112 -50528441 + L1MA7 LINE L1 6212 6261 -30 5070 197 21 6 chr11 100255261 100256973 -50526580 + L1MA4 LINE L1 4546 6285 -15 24 32 0 0 chr11 100256976 100257007 -50526546 + AT_rich Low_complexity Low_complexity 1 31 0 22 80 0 0 chr11 100257051 100257101 -50526452 + AT_rich Low_complexity Low_complexity 1 50 0 270 179 28 38 chr11 100257425 100257531 -50526022 + (TA)n Simple_repeat Simple_repeat 1 105 0 716 151 7 29 chr11 100257555 100257694 -50525859 - L1M2 LINE L1 -502 5798 5663 2121 173 36 25 chr11 100257738 100258213 -50525340 + L1MA7 LINE L1 5810 6289 -2 31 0 0 0 chr11 100258213 100258244 -50525309 + AT_rich Low_complexity Low_complexity 1 31 0 237 203 29 14 chr11 100258447 100258516 -50525037 + L1ME LINE L1 5793 5862 -259 38 22 0 0 chr11 100258720 100258765 -50524788 + AT_rich Low_complexity Low_complexity 1 45 0 14440 101 8 17 chr11 100260391 100262624 -50520929 + L1P3 LINE L1 1 3271 -3190 4114 104 2 17 chr11 100262725 100263310 -50520243 + HERVL LTR ERVL 4477 5052 -602 183 327 78 39 chr11 100263311 100263464 -50520089 - L2 LINE L2 -2804 510 352 3119 99 11 5 chr11 100263464 100263907 -50519646 + HERVL-A2 LTR ERVL 5209 5654 0 1091 93 0 0 chr11 100263907 100264057 -50519496 + MLT2A2 LTR ERVL 1 150 -303 3332 100 7 0 chr11 100264058 100264508 -50519045 + MLT2A2 LTR ERVL 1 453 0 215 326 159 38 chr11 100264629 100264810 -50518743 + L2 LINE L2 2266 2424 -890 249 33 0 0 chr11 100264810 100264840 -50518713 + (TC)n Simple_repeat Simple_repeat 1 30 0 215 326 159 38 chr11 100264840 100265096 -50518457 + L2 LINE L2 2424 2823 -491 * 225 239 0 99 chr11 100265086 100265157 -50518396 + L2 LINE L2 3249 3312 -1 286 294 0 28 chr11 100265484 100265593 -50517960 + GA-rich Low_complexity Low_complexity 3 108 0 684 230 7 14 chr11 100265762 100265976 -50517577 + FRAM SINE Alu 1 212 0 1956 139 7 3 chr11 100266340 100266635 -50516918 + AluSx SINE Alu 1 296 -16 517 269 122 39 chr11 100266754 100267033 -50516520 - HAL1 LINE L1 -678 1829 1528 245 339 64 13 chr11 100267009 100267307 -50516246 - HAL1 LINE L1 -1228 1279 967 * 1663 163 40 27 chr11 100267377 100267677 -50515876 - AluSx SINE Alu -8 304 1 252 86 0 0 chr11 100268136 100268171 -50515382 + (CA)n Simple_repeat Simple_repeat 2 36 0 189 0 0 0 chr11 100268170 100268191 -50515362 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 653 252 173 43 chr11 100269155 100269484 -50514069 - LTR50 LTR ERVL 0 795 424 493 282 193 5 chr11 100269509 100269722 -50513831 - LTR50 LTR ERVL -475 320 68 208 278 53 71 chr11 100270822 100270991 -50512562 - L2 LINE L2 -2 3311 3146 321 329 12 0 chr11 100271230 100271312 -50512241 - MIR SINE MIR -179 83 1 191 238 100 50 chr11 100271952 100272032 -50511521 - L2 LINE L2 -7 3306 3223 188 338 35 55 chr11 100272028 100272173 -50511380 - L2 LINE L2 -401 2913 2772 * 203 250 54 54 chr11 100273407 100273499 -50510054 + MIR SINE MIR 12 103 -159 1481 266 108 16 chr11 100273500 100273944 -50509609 + MLT1E LTR MaLR 28 512 -81 200 283 43 76 chr11 100274047 100274231 -50509322 - L2 LINE L2 -420 2894 2717 621 260 29 5 chr11 100274781 100274989 -50508564 + L1ME3A LINE L1 5123 5335 -811 290 303 109 0 chr11 100275018 100275183 -50508370 - L1ME LINE L1 -345 5817 5635 351 294 33 33 chr11 100275286 100275439 -50508114 + L1ME3A LINE L1 5472 5624 -546 299 261 139 6 chr11 100275435 100275600 -50507953 + L1ME3A LINE L1 5982 6168 -2 * 21 71 0 0 chr11 100275803 100275845 -50507708 + AT_rich Low_complexity Low_complexity 1 42 0 204 267 17 0 chr11 100276668 100276728 -50506825 + GA-rich Low_complexity Low_complexity 1 61 0 351 0 0 0 chr11 100276893 100276932 -50506621 + (TG)n Simple_repeat Simple_repeat 2 40 0 195 331 99 25 chr11 100276941 100277062 -50506491 + L2 LINE L2 3180 3309 -4 2474 78 0 7 chr11 100277418 100277726 -50505827 + AluY SINE Alu 3 308 -3 22 0 0 0 chr11 100277789 100277811 -50505742 + AT_rich Low_complexity Low_complexity 1 22 0 940 73 24 0 chr11 100278336 100278460 -50505093 + AluSq/x SINE Alu 1 127 -185 924 291 87 25 chr11 100278578 100279132 -50504421 + L2 LINE L2 2529 3109 -204 210 269 167 0 chr11 100279320 100279398 -50504155 + L2 LINE L2 3221 3311 -2 3035 140 16 25 chr11 100279422 100279972 -50503581 - L1PB1 LINE L1 -3 6148 5604 2289 123 39 6 chr11 100279979 100280453 -50503100 + L1PB1 LINE L1 5141 5629 -522 315 347 8 8 chr11 100280880 100281001 -50502552 + MIR SINE MIR 6 126 -136 213 224 20 0 chr11 100281079 100281128 -50502425 + (CATA)n Simple_repeat Simple_repeat 3 52 0 486 0 0 0 chr11 100282436 100282490 -50501063 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 206 240 0 20 chr11 100282666 100282716 -50500837 - MIR SINE MIR 0 262 214 408 354 86 15 chr11 100282805 100283130 -50500423 - L1ME4a LINE L1 -283 5838 5491 2037 134 3 10 chr11 100283157 100283456 -50500097 + AluSx SINE Alu 3 299 -13 1506 243 48 14 chr11 100283663 100284166 -50499387 - L1 LINE L1 -2508 3638 3119 703 149 53 0 chr11 100284437 100284551 -50499002 + AluSq/x SINE Alu 1 120 -193 15776 67 4 2 chr11 100284614 100287656 -50495897 - L1PA6 LINE L1 -29 6125 3079 7501 25 5 0 chr11 100287656 100288847 -50494706 - L1PA2 LINE L1 -1 6154 4964 4093 25 0 0 chr11 100288847 100289333 -50494220 + L1PA2 LINE L1 4458 4943 -1203 881 37 0 0 chr11 100289330 100289439 -50494114 - L1PA6 LINE L1 -3065 3081 2973 * 21 0 0 0 chr11 100289755 100289776 -50493777 + AT_rich Low_complexity Low_complexity 1 21 0 1966 154 0 0 chr11 100289776 100290069 -50493484 - AluSx SINE Alu -19 293 1 2376 125 10 22 chr11 100290212 100290621 -50492932 - L1PA13 LINE L1 -14 6149 5746 188 264 218 0 chr11 100290643 100290730 -50492823 + L2 LINE L2 3160 3265 -7 206 157 0 20 chr11 100290843 100290894 -50492659 + GA-rich Low_complexity Low_complexity 1 50 0 189 286 111 70 chr11 100291337 100291508 -50492045 - MIR SINE MIR -84 178 1 596 305 37 5 chr11 100291661 100291851 -50491702 - MIR SINE MIR -21 241 46 186 226 24 107 chr11 100292380 100292464 -50491089 + MIR SINE MIR 120 196 -66 187 319 33 44 chr11 100293035 100293126 -50490427 - L2 LINE L2 -3159 155 66 1372 227 104 76 chr11 100293885 100294956 -50488597 - L1MC/D LINE L1 -743 5797 4759 1665 131 4 0 chr11 100294963 100295199 -50488354 + AluSq SINE Alu 1 237 -76 243 0 0 0 chr11 100295302 100295329 -50488224 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 342 0 0 0 chr11 100295328 100295366 -50488187 + (GA)n Simple_repeat Simple_repeat 2 39 0 1895 289 71 14 chr11 100295366 100296306 -50487247 - L1MC/D LINE L1 -2379 4161 3168 375 290 125 6 chr11 100296343 100296519 -50487034 - L1ME3A LINE L1 -13 6157 5961 1282 179 94 38 chr11 100296626 100296944 -50486609 - MER44D DNA MER2_type -3 606 1 1579 223 96 21 chr11 100296994 100297464 -50486089 - L1MDa LINE L1 -3401 3139 2706 2228 73 0 14 chr11 100297464 100297782 -50485771 - AluY SINE Alu 0 314 1 1579 223 96 21 chr11 100297782 100300178 -50483375 - L1MDa LINE L1 -3834 2706 2 21 82 0 0 chr11 100300370 100300419 -50483134 + AT_rich Low_complexity Low_complexity 1 49 0 472 243 0 9 chr11 100300972 100301083 -50482470 + AluSg/x SINE Alu 183 292 -20 1857 154 5 66 chr11 100302380 100302445 -50481108 + L1 LINE L1 3913 3980 -2166 2303 90 0 0 chr11 100302445 100302756 -50480797 + AluY SINE Alu 1 311 0 1857 154 5 66 chr11 100302756 100303067 -50480486 + L1 LINE L1 3980 4266 -1880 1332 244 74 24 chr11 100304242 100304619 -50478934 - MSTD LTR MaLR 0 396 1 369 323 44 46 chr11 100305582 100305821 -50477732 - MIR SINE MIR -28 234 2 439 256 31 31 chr11 100306161 100306290 -50477263 + L3b LINE CR1 1283 1411 -172 331 365 43 17 chr11 100306484 100306599 -50476954 - L2 LINE L2 -12 3260 3143 35 0 0 0 chr11 100307223 100307258 -50476295 + AT_rich Low_complexity Low_complexity 1 35 0 266 339 58 53 chr11 100307687 100307858 -50475695 - MIR SINE MIR -19 243 72 495 263 58 0 chr11 100308079 100308216 -50475337 - MIR SINE MIR -2 260 116 522 290 132 91 chr11 100308216 100309284 -50474269 + L1 LINE L1 4192 5303 -843 222 222 0 0 chr11 100309295 100309340 -50474213 + (TATG)n Simple_repeat Simple_repeat 4 48 0 941 246 19 19 chr11 100310476 100310547 -50473006 - L1PB4 LINE L1 -2 6856 6786 4924 110 1 4 chr11 100310547 100311240 -50472313 + LTR8 LTR ERV1 1 691 0 941 246 19 19 chr11 100311240 100311424 -50472129 - L1PB4 LINE L1 -71 6787 6601 1449 161 88 0 chr11 100311424 100311685 -50471868 - AluSx SINE Alu -12 300 17 3295 186 18 31 chr11 100311696 100313061 -50470492 - L1PB4 LINE L1 -254 6604 5249 7795 256 36 42 chr11 100313080 100314999 -50468554 - L1PB4 LINE L1 -2450 4398 2471 222 0 79 0 chr11 100314999 100315037 -50468516 + T-rich Low_complexity Low_complexity 2 42 0 7795 256 36 42 chr11 100315037 100317532 -50466021 - L1PB4 LINE L1 -4377 2471 8 1596 187 144 3 chr11 100318253 100318628 -50464925 + MSTA LTR MaLR 1 428 0 4162 74 3 23 chr11 100319510 100320079 -50463474 + L1PA7 LINE L1 5576 6133 -21 459 63 0 0 chr11 100320082 100320145 -50463408 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 2920 228 64 13 chr11 100320163 100320493 -50463060 - L1 LINE L1 -2507 3843 3531 1501 214 3 22 chr11 100320493 100320810 -50462743 - AluJo SINE Alu -1 311 1 2920 228 64 13 chr11 100320810 100320839 -50462714 - L1 LINE L1 -2819 3531 3505 189 0 0 0 chr11 100320839 100320860 -50462693 + (TC)n Simple_repeat Simple_repeat 2 22 0 2920 228 64 13 chr11 100320860 100321425 -50462128 - L1 LINE L1 -2845 3505 2871 2229 294 72 15 chr11 100321427 100322841 -50460712 - L1 LINE L1 -4246 2105 807 1228 300 27 56 chr11 100323319 100323937 -50459616 - L1 LINE L1 -4722 628 2 395 283 301 18 chr11 100324790 100325062 -50458491 + L3b LINE CR1 1198 1546 -37 1548 237 134 29 chr11 100325837 100326428 -50457125 + MLT1E1 LTR MaLR 2 654 0 319 402 89 19 chr11 100326497 100326868 -50456685 + L2 LINE L2 2448 2844 -470 353 384 72 23 chr11 100326936 100327241 -50456312 + L2 LINE L2 2941 3260 -12 292 228 38 0 chr11 100327682 100327761 -50455792 - LTR37B LTR ERV1 -384 84 3 1815 138 43 32 chr11 100327901 100328270 -50455283 - THE1C LTR MaLR 0 375 3 3686 143 9 11 chr11 100328272 100328845 -50454708 - THE1C-int LTR MaLR 0 1580 1009 2017 133 3 0 chr11 100329134 100329443 -50454110 + AluY SINE Alu 1 310 -1 204 146 24 0 chr11 100330416 100330457 -50453096 + T-rich Low_complexity Low_complexity 3 44 0 793 318 123 4 chr11 100331185 100331632 -50451921 - L2 LINE L2 -19 3294 2801 270 193 167 88 chr11 100331637 100331751 -50451802 + MER63 DNA MER1_type 2 750 -86 232 191 0 0 chr11 100331752 100331794 -50451759 + MER63 DNA MER1_type 976 1017 -43 277 375 114 4 chr11 100332404 100332641 -50450912 - L2 LINE L2 -221 3092 2830 280 277 62 0 chr11 100332657 100332722 -50450831 - MER91A DNA MER1_type 0 196 128 421 283 158 25 chr11 100333560 100333959 -50449594 - L1ME4a LINE L1 -192 5929 5478 222 314 29 73 chr11 100336433 100336570 -50446983 - L2 LINE L2 -4 3309 3179 254 279 63 27 chr11 100336870 100336981 -50446572 + LTR16C LTR ERVL 5 119 -372 26 64 0 0 chr11 100337659 100337706 -50445847 + AT_rich Low_complexity Low_complexity 1 47 0 1696 204 62 16 chr11 100337757 100338130 -50445423 + MER57A LTR ERV1 10 399 -4 1228 205 123 31 chr11 100338138 100338524 -50445029 - MER31A LTR ERV1 -37 444 42 397 303 130 59 chr11 100339501 100340030 -50443523 + L1MEd LINE L1 57 623 -5496 35 0 0 0 chr11 100340324 100340359 -50443194 + AT_rich Low_complexity Low_complexity 1 35 0 1036 251 140 9 chr11 100340435 100340898 -50442655 + L1ME2 LINE L1 5631 6154 -10 504 291 96 55 chr11 100340934 100341154 -50442399 - MIR SINE MIR -10 252 24 230 233 33 17 chr11 100341177 100341237 -50442316 + MER5B DNA MER1_type 63 123 -55 491 271 78 20 chr11 100341280 100341524 -50442029 + L1ME3A LINE L1 5683 5940 -230 470 286 26 71 chr11 100342153 100342422 -50441131 - MIR SINE MIR -2 260 4 723 154 24 0 chr11 100343681 100343804 -50439749 - THE1B LTR MaLR 0 364 239 2440 98 38 11 chr11 100343804 100344170 -50439383 + THE1C-int LTR MaLR 1205 1580 0 1744 137 54 29 chr11 100344172 100344486 -50439067 + THE1C LTR MaLR 3 324 -51 1873 89 4 8 chr11 100345363 100345620 -50437933 + AluY SINE Alu 1 256 -55 365 305 23 0 chr11 100345868 100345996 -50437557 + MIR SINE MIR 127 257 -5 557 283 26 7 chr11 100346005 100346157 -50437396 - L2 LINE L2 -598 2716 2562 767 222 77 80 chr11 100346192 100346482 -50437071 - L1MC5 LINE L1 -201 7760 7471 360 0 0 0 chr11 100346482 100346522 -50437031 + (CA)n Simple_repeat Simple_repeat 2 41 0 767 222 77 80 chr11 100346522 100346741 -50436812 - L1MC5 LINE L1 -490 7471 7253 229 279 96 87 chr11 100346879 100347349 -50436204 - HAL1b LINE L1 -808 540 67 334 354 14 41 chr11 100348469 100348616 -50434937 - MIR SINE MIR -110 152 10 24 77 0 0 chr11 100349536 100349588 -50433965 + AT_rich Low_complexity Low_complexity 1 52 0 894 356 97 32 chr11 100350395 100350855 -50432698 + L2 LINE L2 2286 2813 -500 747 196 22 0 chr11 100350855 100351039 -50432514 + MER53 DNA DNA 2 189 0 894 356 97 32 chr11 100351039 100351312 -50432241 + L2 LINE L2 2813 3067 -246 2255 197 36 6 chr11 100351606 100352078 -50431475 + MER66B LTR ERV1 1 486 0 358 318 137 14 chr11 100353941 100354152 -50429401 + MIR SINE MIR 20 256 -6 222 376 0 88 chr11 100354949 100355175 -50428378 + L2 LINE L2 3042 3247 -25 452 172 50 0 chr11 100355447 100355546 -50428007 - L1MA3 LINE L1 0 6305 6202 262 62 0 42 chr11 100355540 100355588 -50427965 + L1MA2 LINE L1 6036 6081 -223 * 1956 225 0 0 chr11 100355592 100356027 -50427526 - L1 LINE L1 -848 6717 6283 * 6090 208 120 11 chr11 100356022 100357401 -50426152 - L1 LINE L1 -6017 1548 20 2203 85 0 3 chr11 100357412 100357730 -50425823 - AluY SINE Alu 0 317 1 233 271 106 12 chr11 100360052 100360137 -50423416 - L2 LINE L2 -1 3271 3179 212 333 51 26 chr11 100360758 100360875 -50422678 + MIR3 SINE MIR 87 206 -2 2434 83 0 0 chr11 100362091 100362392 -50421161 + AluY SINE Alu 1 301 -10 422 269 54 23 chr11 100362473 100362624 -50420929 + MER5A DNA MER1_type 19 177 -4 249 299 92 54 chr11 100363131 100363199 -50420354 - L2 LINE L2 -5 3308 3244 968 212 9 44 chr11 100363199 100363425 -50420128 + MER20 DNA MER1_type 2 219 0 249 299 92 54 chr11 100363425 100363540 -50420013 - L2 LINE L2 -69 3244 3118 1312 180 12 17 chr11 100363822 100364142 -50419411 - MLT1A1 LTR MaLR 0 365 1 432 366 59 11 chr11 100364471 100364744 -50418809 + MLT1K LTR MaLR 205 490 -98 281 320 50 10 chr11 100364961 100365061 -50418492 - MIR SINE MIR -158 104 1 749 264 92 4 chr11 100365240 100365467 -50418086 - MIR SINE MIR -14 248 2 290 202 0 11 chr11 100365820 100365909 -50417644 + (TA)n Simple_repeat Simple_repeat 1 88 0 384 289 54 88 chr11 100366314 100366667 -50416886 + L1MC4a LINE L1 5589 5929 -1879 476 327 19 23 chr11 100366923 100367137 -50416416 - MIR SINE MIR -3 259 47 761 265 75 26 chr11 100367330 100367588 -50415965 - MIR SINE MIR 0 262 1 634 212 0 0 chr11 100367701 100367833 -50415720 + FLAM_A SINE Alu 1 132 -1 524 225 107 35 chr11 100367966 100368135 -50415418 - MIR SINE MIR 0 262 82 228 274 0 0 chr11 100368749 100368800 -50414753 + Tigger7 DNA MER2_type 5 55 -284 * 942 116 36 176 chr11 100368797 100369098 -50414455 + Tigger7 DNA MER2_type 2229 2487 0 824 159 35 0 chr11 100369857 100370002 -50413551 - Tigger3(Golem) DNA MER2_type -89 2940 2791 16514 226 38 21 chr11 100370008 100375943 -50407610 + L1PA12 LINE L1 1 6731 -853 462 162 0 81 chr11 100375944 100376043 -50407510 + FRAM SINE Alu 62 152 -24 286 192 0 91 chr11 100376153 100376252 -50407301 + MLT1A1 LTR MaLR 1 90 -275 309 109 0 0 chr11 100376746 100376792 -50406761 + (TA)n Simple_repeat Simple_repeat 2 47 0 1513 283 63 20 chr11 100377020 100377529 -50406024 + MER34 LTR ERV1 12 542 0 277 339 59 25 chr11 100377651 100377769 -50405784 + MIR3 SINE MIR 14 135 -73 370 300 104 47 chr11 100378793 100379125 -50404428 + L1ME LINE L1 5255 5567 -554 2342 101 6 41 chr11 100379125 100379491 -50404062 + THE1A LTR MaLR 3 355 0 11277 109 4 2 chr11 100379491 100381067 -50402486 + THE1A-int LTR MaLR 1 1580 0 2777 82 0 0 chr11 100381067 100381422 -50402131 + THE1A LTR MaLR 1 355 0 370 300 104 47 chr11 100381422 100381553 -50402000 + L1ME LINE L1 5566 5731 -390 257 224 45 0 chr11 100381571 100381638 -50401915 + L1ME LINE L1 5790 5859 -262 300 120 0 0 chr11 100381817 100381867 -50401686 + (TAAA)n Simple_repeat Simple_repeat 1 50 0 300 27 0 0 chr11 100382174 100382211 -50401342 + (CA)n Simple_repeat Simple_repeat 2 38 0 390 302 84 69 chr11 100382836 100383038 -50400515 + MIR SINE MIR 14 218 -44 2753 169 15 42 chr11 100383104 100383629 -50399924 + MLT2B2 LTR ERVL 5 515 0 194 256 0 0 chr11 100384601 100384640 -50398913 + MIR SINE MIR 112 150 -112 557 278 160 0 chr11 100384665 100384852 -50398701 - MIR SINE MIR -43 219 3 18442 30 0 0 chr11 100385401 100388381 -50395172 + L1PA3 LINE L1 3170 6154 -1 205 260 20 20 chr11 100388643 100388693 -50394860 + MER91C DNA MER1_type 53 102 -38 343 325 145 5 chr11 100388707 100388907 -50394646 - MIR SINE MIR -33 229 2 401 0 0 20 chr11 100389558 100389608 -50393945 + (TTTTA)n Simple_repeat Simple_repeat 4 52 0 528 16 0 0 chr11 100389608 100389669 -50393884 - L1PA4 LINE L1 -13 6142 6082 201 74 0 0 chr11 100390050 100390077 -50393476 + (CA)n Simple_repeat Simple_repeat 1 27 0 190 234 21 0 chr11 100390548 100390595 -50392958 - L2 LINE L2 -2 3311 3264 698 262 30 0 chr11 100390663 100390827 -50392726 + MER58A DNA MER1_type 40 208 -16 400 344 11 27 chr11 100390866 100391049 -50392504 - L2 LINE L2 -770 2544 2365 493 313 23 35 chr11 100391107 100391366 -50392187 - L1ME LINE L1 -348 5822 5567 1984 155 7 0 chr11 100391368 100391678 -50391875 + AluSx SINE Alu 1 312 0 226 143 32 0 chr11 100391741 100391804 -50391749 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 330 202 18 92 chr11 100391829 100391938 -50391615 + L1M4 LINE L1 3907 4007 -2139 328 284 18 0 chr11 100392117 100392226 -50391327 - L1ME LINE L1 -647 5519 5409 215 371 86 36 chr11 100392734 100392874 -50390679 + L2 LINE L2 3126 3272 0 918 323 131 9 chr11 100393369 100394165 -50389388 + L2 LINE L2 2435 3313 0 828 165 0 0 chr11 100394226 100394359 -50389194 + FLAM_C SINE Alu 1 133 0 291 28 0 0 chr11 100396741 100396777 -50386776 + (CA)n Simple_repeat Simple_repeat 1 36 0 748 292 29 5 chr11 100397148 100397357 -50386196 + MIR SINE MIR 18 231 -31 343 320 92 67 chr11 100397379 100397769 -50385784 - L2 LINE L2 -45 3268 2869 274 183 127 14 chr11 100398863 100398934 -50384619 - L2 LINE L2 0 3313 3235 455 347 77 50 chr11 100398957 100399294 -50384259 - L2 LINE L2 -9 3263 2918 352 335 19 25 chr11 100399363 100399524 -50384029 - MIR SINE MIR -95 167 8 483 348 165 15 chr11 100399590 100400070 -50383483 - L2 LINE L2 -497 2817 2266 369 338 0 22 chr11 100400171 100400307 -50383246 + MIR3 SINE MIR 62 194 -14 268 254 0 0 chr11 100400476 100400531 -50383022 - L2 LINE L2 -2 3270 3216 521 201 58 71 chr11 100400791 100400945 -50382608 - MER104 DNA Tc2 0 180 29 248 260 73 0 chr11 100402166 100402262 -50381291 + MER103 DNA DNA 13 115 -51 2173 73 3 51 chr11 100402363 100402705 -50380848 + AluY SINE Alu 1 311 0 28 48 0 0 chr11 100402768 100402810 -50380743 + AT_rich Low_complexity Low_complexity 1 42 0 197 264 185 62 chr11 100403580 100403758 -50379795 - MIR SINE MIR -1 261 62 203 167 33 17 chr11 100404802 100404862 -50378691 + (TATAA)n Simple_repeat Simple_repeat 1 61 0 671 248 40 62 chr11 100406040 100406266 -50377287 - MER58A DNA MER1_type 0 224 4 296 365 56 22 chr11 100406605 100406783 -50376770 + MIR3 SINE MIR 15 198 -10 2718 250 32 2 chr11 100406798 100407421 -50376132 + MER82 DNA MER2_type 11 652 -1 301 298 36 0 chr11 100408126 100408210 -50375343 - L2 LINE L2 -2 3311 3225 534 280 11 46 chr11 100408232 100408407 -50375146 + MIR SINE MIR 93 261 -1 225 152 0 0 chr11 100409283 100409316 -50374237 + MER82 DNA MER2_type 292 324 -329 380 333 11 23 chr11 100409631 100409808 -50373745 + MER117 DNA MER1_type 13 187 -10 780 282 101 10 chr11 100410151 100410449 -50373104 - MLT1J2 LTR MaLR -125 325 1 586 256 12 6 chr11 100410697 100410861 -50372692 - L1MD2 LINE L1 0 6359 6195 2266 239 124 51 chr11 100410864 100411653 -50371900 - L1MDa LINE L1 -5680 860 14 22 0 0 0 chr11 100411661 100411683 -50371870 + AT_rich Low_complexity Low_complexity 1 22 0 319 342 13 63 chr11 100413781 100414018 -50369535 - L1MC4a LINE L1 -1890 5918 5694 261 244 116 31 chr11 100414184 100414397 -50369156 + MLT1H LTR MaLR 286 521 -28 848 336 10 16 chr11 100414432 100414744 -50368809 - MLT1I LTR MaLR 0 409 100 542 303 51 82 chr11 100414849 100415262 -50368291 - L1MC4a LINE L1 -506 5656 5257 51 31 0 0 chr11 100415413 100415478 -50368075 + AT_rich Low_complexity Low_complexity 1 65 0 421 285 169 24 chr11 100415609 100416289 -50367264 - L1MC4a LINE L1 -1469 4677 3896 1474 192 73 20 chr11 100416352 100416695 -50366858 - MLT1A1 LTR MaLR 0 365 5 262 304 79 59 chr11 100416989 100417380 -50366173 - L1MC4a LINE L1 -3309 2837 2439 339 239 23 11 chr11 100417577 100417665 -50365888 + MIR3 SINE MIR 110 198 -10 22 0 0 0 chr11 100417810 100417832 -50365721 + AT_rich Low_complexity Low_complexity 1 22 0 222 325 24 12 chr11 100418188 100418271 -50365282 - MIR3 SINE MIR -15 193 110 21 36 0 0 chr11 100418443 100418471 -50365082 + AT_rich Low_complexity Low_complexity 1 28 0 655 234 21 42 chr11 100418980 100419172 -50364381 + MER5A DNA MER1_type 1 188 -1 272 340 21 28 chr11 100419451 100419592 -50363961 + L2 LINE L2 3172 3311 -2 456 277 138 6 chr11 100420250 100420409 -50363144 + MIR SINE MIR 36 215 -47 201 377 25 33 chr11 100420807 100420929 -50362624 + L2 LINE L2 2929 3049 -223 395 298 78 0 chr11 100422198 100422339 -50361214 - MIR SINE MIR -55 207 56 338 156 109 0 chr11 100422789 100422853 -50360700 - MER58 DNA MER1_type -2146 274 204 830 178 26 78 chr11 100423233 100423424 -50360129 - MER5A DNA MER1_type -3 186 6 241 286 0 0 chr11 100423526 100423596 -50359957 + GA-rich Low_complexity Low_complexity 2 71 0 43 35 0 0 chr11 100423721 100423778 -50359775 + AT_rich Low_complexity Low_complexity 1 57 0 3669 134 45 22 chr11 100423930 100424024 -50359529 + L1PB3 LINE L1 5497 5587 -567 2227 87 7 0 chr11 100424024 100424324 -50359229 - AluY SINE Alu -9 302 1 3669 134 45 22 chr11 100424324 100424870 -50358683 + L1PB3 LINE L1 5587 6152 -2 1053 309 111 29 chr11 100424904 100425727 -50357826 + HAL1 LINE L1 1516 2405 -102 234 128 0 0 chr11 100425968 100426007 -50357546 + (TA)n Simple_repeat Simple_repeat 1 39 0 291 276 81 32 chr11 100426061 100426282 -50357271 - L1ME LINE L1 -254 6662 6431 1484 221 46 3 chr11 100426328 100426613 -50356940 + MER21B LTR ERV1 1 297 -566 371 131 16 0 chr11 100426614 100426675 -50356878 + LTR62 LTR ERVK 1 62 -657 439 230 58 7 chr11 100426713 100426852 -50356701 - MER106B DNA MER1_type 0 1059 914 204 158 0 0 chr11 100426884 100426922 -50356631 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 267 179 54 18 chr11 100426970 100427026 -50356527 - MER106B DNA MER1_type -1001 58 1 240 269 77 39 chr11 100427045 100427149 -50356404 - L1ME LINE L1 -2213 6390 6283 361 167 39 13 chr11 100427687 100427765 -50355788 - MER116 DNA Mariner 0 80 1 238 253 95 42 chr11 100428007 100428102 -50355451 + MIR3 SINE MIR 15 114 -94 310 395 64 0 chr11 100428224 100428333 -50355220 + L2 LINE L2 3134 3249 -23 1525 202 3 23 chr11 100428335 100428637 -50354916 + AluJo SINE Alu 1 296 -16 356 234 6 66 chr11 100429129 100429257 -50354296 - LTR33A LTR ERVL 0 523 417 584 279 79 19 chr11 100429504 100429719 -50353834 - ERVL LTR ERVL -893 4871 4644 1111 315 85 74 chr11 100429864 100430760 -50352793 - ERVL LTR ERVL -1316 4448 3543 563 193 18 9 chr11 100430922 100431036 -50352517 - MLT1C LTR MaLR -2 465 351 1981 275 58 8 chr11 100431042 100431761 -50351792 - L1ME LINE L1 -939 6002 5248 669 224 106 17 chr11 100431774 100431953 -50351600 + MLT1A1 LTR MaLR 171 365 0 620 281 151 21 chr11 100431954 100432198 -50351355 - L1ME LINE L1 -2060 4881 4581 2069 114 7 0 chr11 100432198 100432497 -50351056 + AluSg1 SINE Alu 1 301 -8 620 281 151 21 chr11 100432497 100432583 -50350970 - L1ME LINE L1 -2360 4581 4508 381 259 7 56 chr11 100432617 100432760 -50350793 - L1ME LINE L1 -5081 1342 1207 1667 199 3 16 chr11 100432810 100433122 -50350431 - LTR39 LTR ERV1 0 783 476 366 23 0 0 chr11 100433123 100433166 -50350387 + (TA)n Simple_repeat Simple_repeat 2 44 0 2481 276 32 19 chr11 100433429 100434458 -50349095 - L1ME2 LINE L1 -24 6140 5102 713 280 42 44 chr11 100434457 100434886 -50348667 + L1M4 LINE L1 4489 4916 -1230 * 2006 138 85 18 chr11 100434886 100435227 -50348326 - THE1B LTR MaLR 0 364 1 10882 102 4 42 chr11 100435227 100436869 -50346684 - THE1B-int LTR MaLR 0 1580 1 2120 125 73 14 chr11 100436869 100437213 -50346340 - THE1B LTR MaLR 0 364 1 303 299 30 15 chr11 100437265 100437399 -50346154 + L1M4 LINE L1 4967 5102 -1044 189 0 0 0 chr11 100438248 100438269 -50345284 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 493 284 140 36 chr11 100438307 100438557 -50344996 + MLT1L LTR MaLR 39 314 -301 438 336 94 8 chr11 100439743 100439978 -50343575 - MIR SINE MIR 0 262 8 222 350 40 30 chr11 100440282 100440382 -50343171 + L2 LINE L2 3171 3271 -1 2140 114 10 7 chr11 100440393 100440699 -50342854 + AluSx SINE Alu 1 307 -5 21 71 0 0 chr11 100440719 100440761 -50342792 + AT_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chr11 100440970 100441013 -50342540 + AT_rich Low_complexity Low_complexity 1 43 0 214 164 57 31 chr11 100441015 100441068 -50342485 + (TA)n Simple_repeat Simple_repeat 1 51 -112 1779 178 20 6 chr11 100441068 100441410 -50342143 - MER7A DNA MER2_type 0 346 2 214 164 57 31 chr11 100441410 100441515 -50342038 + (TA)n Simple_repeat Simple_repeat 51 163 0 389 248 0 34 chr11 100441627 100441744 -50341809 - MLT1I LTR MaLR -19 390 278 240 233 55 0 chr11 100441868 100441941 -50341612 - MLT1I LTR MaLR -379 170 94 21 0 0 0 chr11 100441996 100442017 -50341536 + AT_rich Low_complexity Low_complexity 1 21 0 257 363 49 0 chr11 100442040 100442142 -50341411 - L2 LINE L2 -12 3260 3154 186 118 0 0 chr11 100442291 100442325 -50341228 + (TC)n Simple_repeat Simple_repeat 2 35 0 243 204 0 0 chr11 100442392 100442446 -50341107 + (TA)n Simple_repeat Simple_repeat 2 55 0 315 85 0 0 chr11 100442446 100442493 -50341060 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1469 195 0 34 chr11 100442505 100442797 -50340756 - AluJb SINE Alu -30 282 1 237 135 27 0 chr11 100444116 100444153 -50339400 - MER6 DNA MER2_type -2 863 826 2351 252 78 34 chr11 100445181 100445224 -50338329 - L1ME1 LINE L1 -180 5986 5946 2235 95 3 0 chr11 100445224 100445530 -50338023 - AluSq SINE Alu -6 307 1 2351 252 78 34 chr11 100445530 100446023 -50337530 - L1ME1 LINE L1 -220 5946 5476 2149 134 0 3 chr11 100446023 100446337 -50337216 - AluSq SINE Alu 0 313 1 2351 252 78 34 chr11 100446337 100447326 -50336227 - L1ME1 LINE L1 -690 5476 4377 1528 239 87 10 chr11 100447326 100447719 -50335834 - MSTB LTR MaLR 0 426 4 2989 264 79 8 chr11 100447735 100448991 -50334562 - L1ME1 LINE L1 -1786 4360 3016 216 340 20 30 chr11 100449451 100449551 -50334002 - L3 LINE CR1 -65 1512 1414 301 353 59 15 chr11 100451632 100451768 -50331785 + HAL1 LINE L1 2 143 -2364 2763 289 67 27 chr11 100451998 100453864 -50329689 + L1 LINE L1 418 3848 -985 1120 168 5 0 chr11 100453876 100454073 -50329480 + L1PBa LINE L1 3 200 -6663 * 9355 134 41 16 chr11 100454053 100454975 -50328578 + L1PBa LINE L1 620 1518 -5344 4647 102 36 1 chr11 100454975 100455673 -50327880 - LTR30 LTR ERV1 0 722 1 9355 134 41 16 chr11 100455673 100457383 -50326170 + L1PBa LINE L1 1518 3459 -3403 2056 144 33 28 chr11 100457383 100457745 -50325808 - THE1B LTR MaLR 0 364 1 9355 134 41 16 chr11 100457745 100458001 -50325552 + L1PBa LINE L1 3459 3707 -3155 1376 230 3 0 chr11 100458002 100458311 -50325242 + L1 LINE L1 4290 4599 -2263 476 301 82 11 chr11 100458664 100458847 -50324706 + MLT1I LTR MaLR 199 394 -15 222 276 191 9 chr11 100458964 100459069 -50324484 + MIR3 SINE MIR 79 202 -6 761 138 22 39 chr11 100459496 100459646 -50323907 - MLT1A1 LTR MaLR -208 157 20 282 116 0 0 chr11 100459965 100460008 -50323545 + (TA)n Simple_repeat Simple_repeat 1 43 0 2451 150 12 104 chr11 100460008 100460515 -50323038 - LTR39 LTR ERV1 -321 462 3 755 292 143 21 chr11 100460542 100460919 -50322634 - L1MCc LINE L1 -5351 1072 650 199 224 41 20 chr11 100461182 100461231 -50322322 + L2 LINE L2 3210 3259 -54 1704 151 97 178 chr11 100461395 100462166 -50321387 + LTR8A LTR ERV1 1 709 -18 394 322 65 1 chr11 100462346 100462512 -50321041 + MIR SINE MIR 17 189 -63 875 135 20 20 chr11 100462818 100462966 -50320587 + FRAM SINE Alu 23 170 -6 4925 113 20 1 chr11 100463064 100463422 -50320131 - L1PB1 LINE L1 -1 6150 5800 279 0 0 0 chr11 100463422 100463453 -50320100 + (TG)n Simple_repeat Simple_repeat 2 32 0 4925 113 20 1 chr11 100463453 100463835 -50319718 - L1PB1 LINE L1 -351 5800 5396 1466 224 121 0 chr11 100464021 100464401 -50319152 - MSTA LTR MaLR -2 426 1 315 150 0 0 chr11 100465128 100465188 -50318365 + (TG)n Simple_repeat Simple_repeat 2 61 0 425 271 66 20 chr11 100466445 100466596 -50316957 + MIR SINE MIR 105 262 0 458 337 97 33 chr11 100466724 100467241 -50316312 + L2 LINE L2 700 1249 -2065 2148 113 3 0 chr11 100467269 100467571 -50315982 - AluSc SINE Alu -2 307 5 571 316 161 26 chr11 100467607 100468073 -50315480 + L2 LINE L2 2245 2773 -541 247 377 18 9 chr11 100468120 100468234 -50315319 + L2 LINE L2 3139 3253 -19 3423 139 13 2 chr11 100468299 100468845 -50314708 - L1PA15 LINE L1 -9 6156 5605 251 65 0 0 chr11 100468845 100468876 -50314677 + L1PA15 LINE L1 5571 5601 -564 470 271 22 66 chr11 100468927 100469108 -50314445 + FAM SINE Alu 1 173 -2 195 129 0 0 chr11 100469319 100469350 -50314203 + (GGA)n Simple_repeat Simple_repeat 1 31 0 616 227 101 98 chr11 100470543 100470829 -50312724 - LTR16A LTR ERVL -6 444 158 202 325 53 124 chr11 100470966 100471175 -50312378 + L2 LINE L2 2983 3176 -96 1745 186 24 15 chr11 100471843 100472182 -50311371 - MER2 DNA MER2_type -1 343 2 611 316 56 17 chr11 100473307 100473538 -50310015 + MIR SINE MIR 2 241 -21 602 240 61 56 chr11 100474573 100474769 -50308784 - MIR SINE MIR -16 246 50 222 105 0 0 chr11 100475256 100475294 -50308259 + (CA)n Simple_repeat Simple_repeat 1 38 0 6613 119 13 9 chr11 100476461 100477556 -50305997 - L1MA3 LINE L1 0 6305 5207 232 259 0 0 chr11 100477556 100477610 -50305943 - MLT1K LTR MaLR -7 581 528 382 274 226 10 chr11 100477625 100477833 -50305720 - MIR SINE MIR -3 259 7 284 234 80 103 chr11 100480846 100481021 -50302532 + L2 LINE L2 3006 3176 -137 225 237 0 0 chr11 100481155 100481214 -50302339 + GA-rich Low_complexity Low_complexity 3 61 0 375 300 148 50 chr11 100481215 100481518 -50302035 - MLT1K LTR MaLR -67 521 189 230 323 103 46 chr11 100481486 100481681 -50301872 - MLT1L LTR MaLR -409 206 1 * 197 308 0 0 chr11 100481704 100481756 -50301797 - L2 LINE L2 -560 2754 2703 226 342 74 40 chr11 100481795 100481944 -50301609 - L2 LINE L2 -780 2534 2381 530 296 181 35 chr11 100482341 100482712 -50300841 - MLT1H LTR MaLR -2 547 123 233 250 89 0 chr11 100483347 100483403 -50300150 + L1MEc LINE L1 37 97 -6299 376 211 21 0 chr11 100483404 100483499 -50300054 - L1 LINE L1 -3188 4377 4281 5111 156 82 14 chr11 100483601 100485002 -50298551 - L1 LINE L1 -3503 4062 2758 216 0 0 0 chr11 100485002 100485026 -50298527 + (TC)n Simple_repeat Simple_repeat 1 24 0 5111 156 82 14 chr11 100485026 100487090 -50296463 - L1 LINE L1 -4807 2758 11 266 259 138 0 chr11 100487088 100487204 -50296349 + L1MA10 LINE L1 6203 6334 0 * 329 335 13 46 chr11 100487225 100487377 -50296176 + MIR3 SINE MIR 58 204 -4 656 278 118 12 chr11 100487502 100487757 -50295796 + MLT1I LTR MaLR 94 375 -34 270 207 0 0 chr11 100487962 100488020 -50295533 + (TA)n Simple_repeat Simple_repeat 2 59 0 593 192 0 0 chr11 100488325 100488424 -50295129 - L1M1 LINE L1 -7152 413 315 603 250 19 6 chr11 100488696 100488852 -50294701 + MER103 DNA DNA 8 165 -1 183 319 160 35 chr11 100489446 100489590 -50293963 + L2 LINE L2 2865 3026 -246 2103 104 16 29 chr11 100490020 100490336 -50293217 + AluSq SINE Alu 1 312 -1 2960 285 64 47 chr11 100490569 100492083 -50291470 + L2 LINE L2 1779 3313 0 2483 151 164 13 chr11 100492241 100492699 -50290854 - MER1A DNA MER1_type 0 527 1 211 329 117 19 chr11 100493134 100493347 -50290206 - L3 LINE CR1 -130 1447 1214 264 216 34 23 chr11 100493457 100493545 -50290008 - MLT1J1 LTR MaLR -3 443 355 204 67 0 0 chr11 100494643 100494673 -50288880 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 207 265 29 0 chr11 100495230 100495298 -50288255 + GA-rich Low_complexity Low_complexity 2 71 0 6020 167 7 6 chr11 100495598 100497797 -50285756 + L1PB1 LINE L1 3952 6150 -1 6044 196 30 8 chr11 100497803 100499417 -50284136 + L1P5 LINE L1 3829 5482 -672 2096 199 46 23 chr11 100499529 100500011 -50283542 - MER6A DNA MER2_type -111 494 2 325 317 82 8 chr11 100500480 100500666 -50282887 + MIR SINE MIR 6 254 -8 188 61 61 0 chr11 100500725 100500758 -50282795 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 186 279 0 49 chr11 100500895 100500956 -50282597 + L2 LINE L2 2691 2748 -566 237 277 116 9 chr11 100501091 100501203 -50282350 + L2 LINE L2 2937 3060 -253 939 106 0 0 chr11 100501819 100501961 -50281592 - L1MA5 LINE L1 -2 6298 6157 288 303 101 8 chr11 100501985 100502104 -50281449 + MIR SINE MIR 10 139 -123 1713 143 67 35 chr11 100502151 100502692 -50280861 - MER51A LTR ERV1 0 634 1 588 170 63 25 chr11 100503976 100504135 -50279418 - MER53 DNA DNA 0 189 25 1879 146 38 35 chr11 100504136 100504534 -50279019 - L1MA10 LINE L1 -1 6333 5935 1319 199 18 46 chr11 100504534 100504815 -50278738 - AluJo SINE Alu -9 303 31 280 103 0 0 chr11 100504958 100504997 -50278556 - L1MA10 LINE L1 -456 5878 5840 284 253 32 32 chr11 100505782 100505877 -50277676 + MIR SINE MIR 96 190 -72 22 0 0 0 chr11 100505979 100506001 -50277552 + AT_rich Low_complexity Low_complexity 1 22 0 195 395 167 0 chr11 100506560 100506674 -50276879 + L2 LINE L2 3138 3270 -2 2543 194 89 174 chr11 100506707 100507820 -50275733 + MER52A LTR ERV1 1 923 -832 2063 141 22 35 chr11 100507820 100508189 -50275364 - THE1B LTR MaLR 0 364 1 2543 194 89 174 chr11 100508189 100508761 -50274792 + MER52A LTR ERV1 923 1542 -213 181 278 0 56 chr11 100559799 100559853 -50223700 + MIR SINE MIR 50 100 -162 13793 191 27 20 chr11 100559956 100561943 -50221610 - L1MA4 LINE L1 0 7719 5748 2246 128 3 0 chr11 100561943 100562255 -50221298 - AluSp SINE Alu 0 313 1 13793 191 27 20 chr11 100562255 100564180 -50219373 - L1MA4 LINE L1 -1971 5748 3647 1214 235 28 59 chr11 100564181 100564688 -50218865 - L1MA4 LINE L1 -3967 3598 3108 5159 177 14 13 chr11 100564799 100566073 -50217480 - L1M2 LINE L1 -702 5610 4331 3190 107 16 6 chr11 100566076 100566572 -50216981 + L1P LINE L1 4252 4752 -1394 536 331 58 42 chr11 100566622 100566882 -50216671 + L2 LINE L2 2993 3256 -16 389 255 59 0 chr11 100566985 100567087 -50216466 - L2 LINE L2 -4 3309 3202 424 325 5 52 chr11 100567861 100568052 -50215501 - MIR SINE MIR -56 206 25 196 317 158 0 chr11 100568088 100568170 -50215383 + MIR SINE MIR 56 150 -112 440 305 81 6 chr11 100568211 100568385 -50215168 - MIR SINE MIR -56 206 20 1062 165 83 4 chr11 100568401 100568631 -50214922 - MER58B DNA MER1_type -27 314 67 2277 184 56 16 chr11 100568631 100569146 -50214407 + L1MC3 LINE L1 7242 7777 -8 402 316 22 127 chr11 100569377 100569833 -50213720 - L2 LINE L2 -1 3271 2864 1094 140 9 11 chr11 100569913 100570226 -50213327 + MLT1B LTR MaLR 1 378 -12 301 320 47 20 chr11 100570337 100570487 -50213066 - L2 LINE L2 -1041 2273 2120 546 16 0 0 chr11 100571009 100571072 -50212481 + (TG)n Simple_repeat Simple_repeat 2 64 0 2785 157 33 82 chr11 100572305 100572999 -50210554 + LTR8 LTR ERV1 1 727 0 374 286 43 37 chr11 100573113 100573274 -50210279 - MIR3 SINE MIR -25 183 22 583 292 113 25 chr11 100573482 100573722 -50209831 - MIR SINE MIR 0 262 2 417 246 60 34 chr11 100575098 100575250 -50208303 + MIR SINE MIR 11 165 -61 375 41 0 0 chr11 100576344 100576393 -50207160 + (CA)n Simple_repeat Simple_repeat 2 50 0 270 175 53 18 chr11 100576829 100576886 -50206667 - L2 LINE L2 -66 3247 3189 22 0 0 0 chr11 100577491 100577513 -50206040 + AT_rich Low_complexity Low_complexity 1 22 0 305 292 214 10 chr11 100578871 100579063 -50204490 + MIR SINE MIR 1 231 -31 2176 117 3 0 chr11 100579464 100579764 -50203789 + AluSx SINE Alu 1 301 -11 374 127 27 23 chr11 100580371 100580475 -50203078 + THE1C LTR MaLR 1 147 -228 * 1592 208 36 32 chr11 100580466 100580600 -50202953 - MLT2A2 LTR ERVL -47 507 375 2174 106 7 3 chr11 100580600 100580892 -50202661 + AluSp SINE Alu 1 293 -20 1592 208 36 32 chr11 100580892 100581260 -50202293 - MLT2A2 LTR ERVL -179 375 2 397 318 16 63 chr11 100581397 100581652 -50201901 - MIR SINE MIR -5 257 15 611 263 160 9 chr11 100581946 100582159 -50201394 + MIR SINE MIR 16 260 -2 392 263 26 26 chr11 100582236 100582388 -50201165 - MER103 DNA DNA -13 153 2 218 32 32 0 chr11 100582697 100582728 -50200825 + (CAT)n Simple_repeat Simple_repeat 1 32 0 316 277 136 19 chr11 100582735 100582890 -50200663 - MIR SINE MIR -12 250 78 332 276 20 10 chr11 100583357 100583455 -50200098 + MER58 DNA MER1_type 1 99 -2321 408 242 22 0 chr11 100583461 100583552 -50200001 + MER58 DNA MER1_type 2328 2420 0 1111 194 109 3 chr11 100584127 100584411 -50199142 + MER33 DNA MER1_type 5 318 -6 6645 209 32 6 chr11 100584652 100586520 -50197033 + L1M3f LINE L1 2 1916 -4065 564 228 0 0 chr11 100586716 100586839 -50196714 - L1 LINE L1 -1272 4874 4752 1906 219 62 9 chr11 100586842 100587308 -50196245 + L1MA9 LINE L1 5783 6273 -39 226 305 78 39 chr11 100587808 100587936 -50195617 + MIR SINE MIR 73 205 -57 1059 261 47 37 chr11 100588678 100589108 -50194445 + L1MC4a LINE L1 4648 5081 -1065 295 288 0 14 chr11 100589108 100589181 -50194372 + polypurine Low_complexity Low_complexity 4 75 0 1268 284 72 16 chr11 100589230 100589782 -50193771 + L1MC4a LINE L1 5254 5836 -1972 238 279 165 29 chr11 100589863 100590135 -50193418 + L1MC4a LINE L1 5845 6153 -1655 493 246 139 11 chr11 100591217 100591404 -50192149 + MIR SINE MIR 52 262 0 219 357 0 0 chr11 100591725 100591781 -50191772 - L2 LINE L2 -71 3201 3146 215 359 112 26 chr11 100591941 100592281 -50191272 - L2 LINE L2 -380 2934 2566 206 349 98 8 chr11 100594047 100594179 -50189374 - L2 LINE L2 -3 3310 3167 986 239 4 21 chr11 100594268 100594506 -50189047 + MIR SINE MIR 28 261 -1 864 233 178 73 chr11 100594677 100594810 -50188743 - MLT1D LTR MaLR -1 504 386 1780 136 4 4 chr11 100594810 100595061 -50188492 - AluSq SINE Alu -62 251 1 864 233 178 73 chr11 100595061 100595377 -50188176 - MLT1D LTR MaLR -119 386 8 284 310 171 13 chr11 100597250 100597408 -50186145 - MIR SINE MIR -48 214 32 386 305 15 0 chr11 100598371 100598502 -50185051 + MIR SINE MIR 97 229 -33 241 291 182 0 chr11 100598884 100598994 -50184559 + MIR SINE MIR 78 207 -55 459 307 0 72 chr11 100599342 100599495 -50184058 - L2 LINE L2 -6 3266 3125 239 260 0 0 chr11 100599964 100600014 -50183539 + MER5A DNA MER1_type 138 187 -2 262 291 47 35 chr11 100600116 100600202 -50183351 - L2 LINE L2 -7 3265 3179 515 333 52 8 chr11 100600895 100601144 -50182409 - MIR SINE MIR 0 262 3 185 246 148 16 chr11 100601235 100601296 -50182257 - L2 LINE L2 -17 3255 3187 239 340 32 84 chr11 100601422 100601672 -50181881 - L2 LINE L2 -86 3186 2950 191 182 0 0 chr11 100601818 100601851 -50181702 + MIR SINE MIR 119 151 -111 389 288 144 7 chr11 100602648 100602794 -50180759 + MIR3 SINE MIR 30 195 -13 256 256 103 0 chr11 100602859 100602937 -50180616 - L2 LINE L2 0 3313 3228 645 313 70 74 chr11 100603048 100603508 -50180045 + L3 LINE CR1 1018 1475 -102 187 250 54 76 chr11 100603773 100603829 -50179724 + MIR SINE MIR 118 173 -89 2954 57 0 59 chr11 100603829 100604254 -50179299 - L1PA6 LINE L1 -2 6152 5753 187 250 54 76 chr11 100604254 100604289 -50179264 + MIR SINE MIR 173 207 -55 205 273 0 0 chr11 100604302 100604346 -50179207 + MIR SINE MIR 181 224 -38 1501 197 93 8 chr11 100607494 100607850 -50175703 - MLT1B LTR MaLR -4 386 1 383 325 0 0 chr11 100608477 100608597 -50174956 - MIR SINE MIR -26 236 117 748 263 89 0 chr11 100610145 100610369 -50173184 - MIR SINE MIR -6 256 13 220 367 0 25 chr11 100610460 100610580 -50172973 + MIR3 SINE MIR 41 157 -51 1569 183 3 40 chr11 100610754 100611055 -50172498 - AluJo SINE Alu -22 290 1 23 0 0 0 chr11 100611056 100611079 -50172474 + AT_rich Low_complexity Low_complexity 1 23 0 286 312 161 15 chr11 100611287 100611486 -50172067 - L2 LINE L2 -13 3300 3073 208 269 0 0 chr11 100611712 100611764 -50171789 - L2 LINE L2 -228 3085 3034 382 269 83 39 chr11 100617026 100617182 -50166371 + MIR SINE MIR 93 255 -7 5717 108 7 3 chr11 100617493 100618360 -50165193 + L1MA3 LINE L1 5436 6305 0 199 369 12 13 chr11 100618382 100618481 -50165072 - MIR SINE MIR -110 98 1 468 309 141 75 chr11 100618900 100619340 -50164213 + L2 LINE L2 2804 3272 0 370 240 19 29 chr11 100619678 100619782 -50163771 - L2 LINE L2 -3 3310 3208 * 382 254 208 0 chr11 100619759 100619889 -50163664 + MIR SINE MIR 100 256 -6 30 0 0 0 chr11 100620402 100620432 -50163121 + AT_rich Low_complexity Low_complexity 1 30 0 264 91 0 0 chr11 100620820 100620864 -50162689 + (A)n Simple_repeat Simple_repeat 1 44 0 1863 186 27 0 chr11 100621710 100622048 -50161505 + MER7A DNA MER2_type 2 346 0 204 318 193 21 chr11 100622337 100622570 -50160983 - L2 LINE L2 -443 2871 2599 417 202 37 73 chr11 100622696 100622805 -50160748 - MER5A DNA MER1_type -83 106 2 222 234 0 0 chr11 100623086 100623133 -50160420 + L2 LINE L2 3267 3313 0 956 294 77 10 chr11 100623341 100623743 -50159810 + LTR16A LTR ERVL 16 444 -6 265 309 154 9 chr11 100625071 100625181 -50158372 + L2 LINE L2 3147 3272 0 873 259 23 9 chr11 100625496 100625712 -50157841 + MIR SINE MIR 4 222 -40 194 88 0 29 chr11 100625730 100625764 -50157789 + (TC)n Simple_repeat Simple_repeat 2 34 0 435 113 0 0 chr11 100625769 100625840 -50157713 + (TG)n Simple_repeat Simple_repeat 2 72 0 933 293 85 70 chr11 100625846 100626630 -50156923 - L2 LINE L2 -36 3277 2487 474 328 79 36 chr11 100626771 100627189 -50156364 - LTR33 LTR ERVL -58 463 28 215 381 42 17 chr11 100628329 100628447 -50155106 + L2 LINE L2 3183 3303 -10 21 0 0 0 chr11 100628819 100628840 -50154713 + AT_rich Low_complexity Low_complexity 1 21 0 425 277 14 35 chr11 100629650 100629791 -50153762 - MIR SINE MIR -51 211 74 2231 68 20 14 chr11 100630067 100630359 -50153194 - AluY SINE Alu -17 294 1 774 160 0 8 chr11 100631302 100631427 -50152126 + FLAM_C SINE Alu 1 124 -19 4452 134 39 5 chr11 100631718 100632466 -50151087 + MER4E LTR ERV1 7 779 0 2569 213 9 4 chr11 100632466 100632991 -50150562 - MER77 LTR ERV1 -77 528 1 2273 67 0 3 chr11 100634185 100634523 -50149030 + AluY SINE Alu 1 337 0 271 316 91 53 chr11 100634717 100634926 -50148627 + L2 LINE L2 3056 3272 0 297 307 5 94 chr11 100636110 100636302 -50147251 - L3 LINE CR1 -6 1571 1397 950 232 82 36 chr11 100636473 100636656 -50146897 - MER69 DNA AcHobo 0 2526 2353 2012 126 64 17 chr11 100636656 100637014 -50146539 - THE1C LTR MaLR 0 375 1 950 232 82 36 chr11 100637014 100637269 -50146284 - MER69 DNA AcHobo -173 2353 2068 673 277 82 17 chr11 100637366 100637842 -50145711 - L1MEc LINE L1 -2534 3681 3175 461 329 106 35 chr11 100637970 100638468 -50145085 - L1MEc LINE L1 -788 1788 1299 1290 272 47 34 chr11 100638483 100638950 -50144603 + L2 LINE L2 2456 2928 -386 339 254 56 118 chr11 100639139 100639513 -50144040 - L1MEc LINE L1 -5248 957 607 346 310 86 32 chr11 100639666 100639853 -50143700 - L1MEc LINE L1 -5901 304 108 24 0 0 0 chr11 100639874 100639898 -50143655 + AT_rich Low_complexity Low_complexity 1 24 0 509 304 69 15 chr11 100639974 100640178 -50143375 + MIR SINE MIR 33 247 -15 226 338 12 0 chr11 100640271 100640351 -50143202 + L2 LINE L2 3227 3307 -6 261 0 0 0 chr11 100640441 100640470 -50143083 + (CA)n Simple_repeat Simple_repeat 2 30 0 365 307 50 28 chr11 100640562 100640780 -50142773 + HAL1b LINE L1 590 812 -536 249 33 0 0 chr11 100641012 100641042 -50142511 + (CA)n Simple_repeat Simple_repeat 1 30 0 2503 61 0 10 chr11 100641395 100641707 -50141846 + AluY SINE Alu 3 311 0 25 31 0 0 chr11 100641814 100641846 -50141707 + AT_rich Low_complexity Low_complexity 1 32 0 1160 217 31 34 chr11 100642062 100642549 -50141004 - MLT1F1 LTR MaLR -2 565 14 362 125 11 102 chr11 100642685 100642773 -50140780 + MADE1 DNA Mariner 1 80 0 360 303 47 65 chr11 100642787 100643037 -50140516 + L1MC/D LINE L1 5493 5737 -447 347 221 259 8 chr11 100644092 100644223 -50139330 - MIR SINE MIR -2 260 97 2520 198 22 33 chr11 100645504 100646050 -50137503 + MLT1F LTR MaLR 1 540 -2 367 244 12 12 chr11 100646164 100646246 -50137307 - MIR SINE MIR -173 89 8 430 314 42 0 chr11 100646999 100647117 -50136436 - MIR SINE MIR -106 156 34 1808 178 64 19 chr11 100647146 100647523 -50136030 - MSTD LTR MaLR -2 394 1 214 269 39 0 chr11 100648220 100648272 -50135281 + polypyrimidine Low_complexity Low_complexity 1 54 0 216 67 0 0 chr11 100648480 100648510 -50135043 + (TTG)n Simple_repeat Simple_repeat 2 31 0 303 319 73 49 chr11 100649959 100650163 -50133390 + MIR SINE MIR 28 236 -26 441 66 0 0 chr11 100650392 100650453 -50133100 + (CA)n Simple_repeat Simple_repeat 2 62 0 256 285 285 0 chr11 100650714 100650844 -50132709 + MIR SINE MIR 26 192 -70 337 318 20 53 chr11 100650911 100651062 -50132491 + MLT2F LTR ERVL 1 146 -517 480 254 59 12 chr11 100651073 100651242 -50132311 + MLT1E3 LTR MaLR 58 234 -390 227 304 9 18 chr11 100651334 100651446 -50132107 + (CATA)n Simple_repeat Simple_repeat 3 113 0 288 0 0 0 chr11 100651478 100651510 -50132043 + (CA)n Simple_repeat Simple_repeat 2 33 0 224 231 0 0 chr11 100651946 100651998 -50131555 - L2 LINE L2 -1 3312 3261 * 870 214 70 39 chr11 100651966 100652008 -50131545 - MIR SINE MIR -15 247 208 2348 68 4 0 chr11 100652008 100652287 -50131266 + AluY SINE Alu 17 296 -15 870 214 70 39 chr11 100652287 100652473 -50131080 - MIR SINE MIR -54 208 12 1838 178 10 54 chr11 100652527 100652932 -50130621 - MLT1B LTR MaLR 0 390 4 429 285 205 20 chr11 100653751 100653951 -50129602 - MIR SINE MIR -8 254 18 330 368 18 25 chr11 100653972 100654135 -50129418 - MIR SINE MIR -72 190 29 255 264 11 58 chr11 100655018 100655105 -50128448 - MIR SINE MIR -116 146 64 274 306 117 79 chr11 100655269 100655612 -50127941 + L2 LINE L2 2384 2739 -575 197 266 31 16 chr11 100655995 100656059 -50127494 - L2 LINE L2 -3 3269 3205 1611 198 68 46 chr11 100657989 100658444 -50125109 + LTR40c LTR ERVL 1 465 0 914 230 20 15 chr11 100658817 100659021 -50124532 - MIR SINE MIR -41 221 17 413 358 104 5 chr11 100659071 100659292 -50124261 - MIR SINE MIR 0 262 20 239 294 158 41 chr11 100659663 100659809 -50123744 - MIR3 SINE MIR -2 206 44 2644 240 5 20 chr11 100660141 100660782 -50122771 + MER82 DNA MER2_type 23 653 0 673 335 40 81 chr11 100661732 100662201 -50121352 + L2 LINE L2 2821 3270 -2 25 31 0 0 chr11 100662795 100662827 -50120726 + AT_rich Low_complexity Low_complexity 1 32 0 449 257 30 0 chr11 100663317 100663418 -50120135 - MIR SINE MIR -71 191 88 2231 114 3 0 chr11 100663751 100664049 -50119504 - AluSq SINE Alu -14 299 1 260 362 59 26 chr11 100664557 100664709 -50118844 - MIR SINE MIR -101 161 5 2246 67 0 7 chr11 100664793 100665103 -50118450 + AluY SINE Alu 1 308 0 605 282 148 48 chr11 100665364 100665722 -50117831 + L3 LINE CR1 1183 1576 -1 333 0 0 0 chr11 100665963 100666000 -50117553 + (TG)n Simple_repeat Simple_repeat 2 38 0 207 0 0 0 chr11 100666394 100666417 -50117136 + (T)n Simple_repeat Simple_repeat 1 23 0 1790 200 11 19 chr11 100666603 100666968 -50116585 + MLT1A1 LTR MaLR 2 363 -2 355 330 105 34 chr11 100668183 100668364 -50115189 - MIR SINE MIR -54 208 17 190 256 0 0 chr11 100668614 100668653 -50114900 - L2 LINE L2 -219 3053 3015 387 225 47 70 chr11 100669198 100669360 -50114193 + MIR SINE MIR 37 192 -62 237 305 0 32 chr11 100669499 100669594 -50113959 - L2 LINE L2 -2 3270 3179 1308 193 14 25 chr11 100669596 100670081 -50113472 + L1MB7 LINE L1 5038 5515 -659 1848 202 19 11 chr11 100670081 100670443 -50113110 - MLT1A1 LTR MaLR 0 365 1 6890 219 66 21 chr11 100670443 100671146 -50112407 - MLT1A1-int LTR MaLR 0 1735 1065 1907 155 7 3 chr11 100671146 100671449 -50112104 + AluSx SINE Alu 1 304 -8 6890 219 66 21 chr11 100671449 100671911 -50111642 - MLT1A1-int LTR MaLR -670 1065 625 15831 33 3 1 chr11 100671911 100674581 -50108972 + L1PA4 LINE L1 3481 6151 -4 6890 219 66 21 chr11 100674581 100675074 -50108479 - MLT1A1-int LTR MaLR -1110 625 2 1882 159 48 28 chr11 100675075 100675433 -50108120 - MLT1A1 LTR MaLR 0 365 1 2716 198 61 5 chr11 100675433 100676053 -50107500 + L1MB7 LINE L1 5511 6165 -19 877 305 19 8 chr11 100676219 100676478 -50107075 - MIR SINE MIR 0 262 1 2137 118 7 7 chr11 100676482 100676849 -50106704 - AluSx SINE Alu 0 373 7 313 262 113 81 chr11 100676919 100676997 -50106556 - L3 LINE CR1 -2 1575 1501 2465 82 0 0 chr11 100676997 100677303 -50106250 - AluY SINE Alu -5 306 1 313 262 113 81 chr11 100677303 100677445 -50106108 - L3 LINE CR1 -76 1501 1348 316 336 38 28 chr11 100677478 100677689 -50105864 - LTR16A1 LTR ERVL 0 457 245 543 259 60 95 chr11 100677867 100678131 -50105422 + MIR SINE MIR 1 251 -11 216 111 0 0 chr11 100679054 100679090 -50104463 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 2275 84 0 3 chr11 100682258 100682555 -50100998 - AluY SINE Alu -13 298 3 282 313 40 47 chr11 100682630 100682780 -50100773 + L2 LINE L2 3160 3308 -5 202 250 0 67 chr11 100683693 100683753 -50099800 - L2 LINE L2 -7 3265 3210 232 286 25 59 chr11 100684203 100684322 -50099231 + MIR SINE MIR 118 232 -30 180 176 0 0 chr11 100684353 100684387 -50099166 + GA-rich Low_complexity Low_complexity 2 35 0 400 258 0 0 chr11 100685574 100685667 -50097886 + MER97a DNA MER1_type? 802 894 0 353 291 78 28 chr11 100686142 100686283 -50097270 - MIR3 SINE MIR -25 183 36 390 336 83 66 chr11 100686549 100686972 -50096581 - L2 LINE L2 0 3272 2843 736 315 71 58 chr11 100687125 100687560 -50095993 - L2 LINE L2 -481 2833 2393 462 267 25 71 chr11 100687987 100688216 -50095337 - MIR3 SINE MIR -42 220 3 2225 226 17 34 chr11 100690317 100690906 -50092647 + MER74B LTR ERVL 44 622 0 495 311 71 21 chr11 100691037 100691320 -50092233 + ERVL LTR ERVL 1390 1686 -4078 385 311 31 50 chr11 100691461 100691683 -50091870 + ERVL LTR ERVL 2431 2648 -3006 559 239 151 32 chr11 100691768 100692052 -50091501 + L1ME4a LINE L1 5804 6121 0 342 337 161 45 chr11 100692498 100692741 -50090812 - L2 LINE L2 -33 3239 2969 772 307 64 9 chr11 100692849 100693175 -50090378 - L3 LINE CR1 -111 1466 1123 432 273 7 49 chr11 100693224 100693355 -50090198 - L2 LINE L2 -8 3305 3179 446 46 15 0 chr11 100693355 100693420 -50090133 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 432 273 7 49 chr11 100693420 100693431 -50090122 - L2 LINE L2 -134 3179 3169 255 31 0 0 chr11 100693440 100693472 -50090081 + (CA)n Simple_repeat Simple_repeat 2 33 0 479 262 131 26 chr11 100693473 100693767 -50089786 - L1MC/D LINE L1 -465 5656 5314 189 0 0 0 chr11 100694580 100694601 -50088952 + (TA)n Simple_repeat Simple_repeat 1 21 0 296 218 26 0 chr11 100695467 100695545 -50088008 + MLT2B1 LTR ERVL 83 162 -252 1429 165 58 55 chr11 100695545 100695908 -50087645 + THE1C LTR MaLR 1 364 -11 733 245 62 62 chr11 100695916 100696238 -50087315 + MLT2B1 LTR ERVL 159 480 -40 342 259 47 0 chr11 100696243 100696328 -50087225 + L1MC4 LINE L1 6615 6703 -1339 188 35 35 0 chr11 100696514 100696543 -50087010 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 228 229 62 0 chr11 100696962 100697010 -50086543 + MIR SINE MIR 63 113 -149 619 340 26 4 chr11 100698216 100698448 -50085105 + MIR SINE MIR 26 262 0 244 282 8 94 chr11 100698453 100698570 -50084983 - L1MC/D LINE L1 -2158 5650 5544 744 221 60 16 chr11 100699481 100699693 -50083860 + MSTD LTR MaLR 215 396 0 368 377 73 18 chr11 100699839 100700168 -50083385 + L2 LINE L2 2457 2803 -511 326 286 98 36 chr11 100700310 100700427 -50083126 + L2 LINE L2 3075 3183 -130 2472 133 64 7 chr11 100700427 100700832 -50082721 - MSTA LTR MaLR 0 428 1 326 286 98 36 chr11 100700832 100700938 -50082615 + L2 LINE L2 3183 3312 -1 515 275 93 48 chr11 100701238 100701572 -50081981 - L1ME4a LINE L1 -175 5946 5598 1185 108 30 0 chr11 100701573 100701740 -50081813 + AluSg/x SINE Alu 127 298 -12 475 329 41 12 chr11 100701740 100701986 -50081567 - L1ME4a LINE L1 -519 5602 5350 838 66 25 0 chr11 100702003 100702124 -50081429 - AluY SINE Alu 0 311 188 268 268 8 8 chr11 100703899 100704026 -50079527 + CT-rich Low_complexity Low_complexity 1 127 0 1370 231 89 28 chr11 100706152 100706577 -50076976 + MLT1D LTR MaLR 55 505 0 342 338 65 30 chr11 100706580 100706781 -50076772 + MIR SINE MIR 46 253 -9 231 328 0 0 chr11 100707320 100707378 -50076175 - L3 LINE CR1 -5 1572 1515 193 341 90 24 chr11 100707545 100707633 -50075920 + L3 LINE CR1 1392 1473 -104 2207 126 10 0 chr11 100707633 100707935 -50075618 + AluSx SINE Alu 1 305 -7 193 341 90 24 chr11 100707935 100708013 -50075540 + L3 LINE CR1 1473 1569 -8 1901 141 6 16 chr11 100708102 100708415 -50075138 - AluSg SINE Alu 0 310 1 2139 125 3 0 chr11 100709383 100709680 -50073873 - AluSg SINE Alu -9 301 4 509 300 42 26 chr11 100710655 100710845 -50072708 - MIR SINE MIR -49 213 21 283 285 185 39 chr11 100711274 100711404 -50072149 - MIR SINE MIR -110 152 4 23 0 0 0 chr11 100711779 100711802 -50071751 + AT_rich Low_complexity Low_complexity 1 23 0 336 341 28 48 chr11 100712690 100713045 -50070508 + L1MEc LINE L1 247 594 -6013 225 287 27 85 chr11 100713367 100713698 -50069855 + L1MEc LINE L1 877 1188 -5228 436 315 48 76 chr11 100713709 100713742 -50069811 + L1MEc LINE L1 1080 1112 -5316 1501 224 28 19 chr11 100713742 100714104 -50069449 + MLT1A1 LTR MaLR 1 365 0 436 315 48 76 chr11 100714104 100714293 -50069260 + L1MEc LINE L1 1112 1287 -5141 1831 170 3 3 chr11 100714293 100714606 -50068947 - AluSx SINE Alu 0 312 1 436 315 48 76 chr11 100714606 100714801 -50068752 + L1MEc LINE L1 1287 1486 -4942 354 302 43 79 chr11 100714808 100715086 -50068467 + L1MEc LINE L1 1622 1889 -4718 15792 171 26 14 chr11 100715117 100721894 -50061659 + L1PB1 LINE L1 3 6862 -5 244 265 59 19 chr11 100721919 100722199 -50061354 + L1MEc LINE L1 1848 2213 -4394 23 0 0 0 chr11 100722221 100722244 -50061309 + AT_rich Low_complexity Low_complexity 1 23 0 1067 233 63 30 chr11 100722498 100722829 -50060724 + MER87 LTR ERV1 148 489 -52 293 240 112 71 chr11 100723011 100723128 -50060425 + L1ME2 LINE L1 5952 6082 -82 7347 147 18 9 chr11 100723128 100724417 -50059136 + HSMAR2 DNA Mariner 2 1301 -1 293 240 112 71 chr11 100724417 100724495 -50059058 + L1ME2 LINE L1 6082 6155 -9 283 256 0 0 chr11 100725480 100725570 -50057983 - L1ME LINE L1 -316 5805 5716 686 281 153 44 chr11 100725959 100726504 -50057049 + L2 LINE L2 2410 3085 -228 3531 179 30 8 chr11 100726504 100727168 -50056385 - LTR58 LTR ERV1 0 679 1 686 281 153 44 chr11 100727168 100727425 -50056128 + L2 LINE L2 3085 3313 0 703 184 32 38 chr11 100727458 100727616 -50055937 + MER5A DNA MER1_type 3 159 -30 204 214 126 67 chr11 100727612 100727721 -50055832 - MIR SINE MIR -44 164 39 * 1199 163 41 148 chr11 100728113 100728525 -50055028 - MLT1A2 LTR MaLR -6 368 1 1278 174 97 0 chr11 100728525 100728784 -50054769 - MLT1A2-int LTR MaLR 0 1735 1452 503 213 1 0 chr11 100728777 100728888 -50054665 - MLT1A2-int LTR MaLR -327 1407 933 * 394 239 0 0 chr11 100729009 100729101 -50054452 - MLT1A2-int LTR MaLR -968 767 676 1896 213 25 24 chr11 100729156 100729833 -50053720 - MLT1A2-int LTR MaLR -487 884 1 1220 236 35 46 chr11 100729838 100730211 -50053342 - MLT1A2 LTR MaLR -5 369 1 192 220 0 20 chr11 100731824 100731874 -50051679 - MIR SINE MIR -68 194 146 232 204 0 0 chr11 100732547 100732596 -50050957 - HsTC2 DNA Tc2 -1812 86 38 477 249 62 40 chr11 100732618 100732795 -50050758 - MIR SINE MIR -34 228 48 189 368 65 0 chr11 100733129 100733284 -50050269 - MIR SINE MIR -24 238 74 724 193 0 21 chr11 100733365 100733510 -50050043 - FRAM SINE Alu 0 40 1 186 128 0 0 chr11 100734513 100734552 -50049001 + (T)n Simple_repeat Simple_repeat 1 39 0 329 312 80 22 chr11 100735533 100735671 -50047882 + MIR3 SINE MIR 19 164 -44 21 0 0 0 chr11 100735859 100735880 -50047673 + AT_rich Low_complexity Low_complexity 1 21 0 679 125 23 16 chr11 100735984 100736112 -50047441 - L1MB3 LINE L1 -2 6181 6053 2174 103 0 0 chr11 100736320 100736601 -50046952 + AluSg SINE Alu 1 281 -29 234 0 0 0 chr11 100737713 100737739 -50045814 + (T)n Simple_repeat Simple_repeat 1 26 0 365 273 60 27 chr11 100738660 100738810 -50044743 - MIR SINE MIR -50 212 58 439 338 86 5 chr11 100739811 100740009 -50043544 + MIR SINE MIR 1 214 -48 741 253 0 17 chr11 100740053 100740227 -50043326 + MER5B DNA MER1_type 8 178 0 227 330 134 0 chr11 100740657 100740769 -50042784 + MIR3 SINE MIR 14 140 -68 225 0 0 0 chr11 100742031 100742056 -50041497 + (A)n Simple_repeat Simple_repeat 1 25 0 1795 90 127 4 chr11 100742259 100742526 -50041027 - AluSg SINE Alu 0 300 1 339 260 94 0 chr11 100742537 100742633 -50040920 - L2 LINE L2 0 3272 3168 277 273 173 9 chr11 100743147 100743257 -50040296 - MIR3 SINE MIR -68 140 13 330 287 62 16 chr11 100743288 100743417 -50040136 + LTR33 LTR ERVL 9 143 -378 365 296 40 33 chr11 100743480 100743632 -50039921 + LTR33 LTR ERVL 244 396 -125 445 289 110 41 chr11 100743680 100743926 -50039627 - MLT1D LTR MaLR -149 356 94 5659 136 3 1 chr11 100744136 100745891 -50037662 + L1PA16 LINE L1 4399 6157 -9 376 123 0 0 chr11 100746072 100746129 -50037424 - MADE1 DNA Mariner 0 80 24 333 150 0 0 chr11 100746122 100746182 -50037371 - MSTB LTR MaLR -366 60 1 * 269 306 0 0 chr11 100746260 100746332 -50037221 - L2 LINE L2 -504 2810 2739 254 173 0 0 chr11 100746338 100746390 -50037163 + MADE1 DNA Mariner 27 78 -2 24 0 0 0 chr11 100746420 100746444 -50037109 + AT_rich Low_complexity Low_complexity 1 24 0 899 264 116 3 chr11 100747120 100747438 -50036115 + L2 LINE L2 2457 2810 -504 364 275 115 15 chr11 100747438 100747516 -50036037 + MER20B DNA MER1_type 1 70 -713 2545 169 14 2 chr11 100747516 100747937 -50035616 + MSTB LTR MaLR 1 426 0 364 275 115 15 chr11 100747937 100748058 -50035495 + MER20B DNA MER1_type 70 220 -563 827 242 110 31 chr11 100748102 100748420 -50035133 + MER20B DNA MER1_type 427 769 -14 768 253 183 31 chr11 100748424 100748850 -50034703 + L2 LINE L2 2803 3299 -14 25 51 0 0 chr11 100748882 100748921 -50034632 + AT_rich Low_complexity Low_complexity 1 39 0 432 264 24 64 chr11 100748959 100749084 -50034469 - HAL1 LINE L1 -1467 1040 921 1139 184 0 29 chr11 100749090 100749297 -50034256 - AluJb SINE Alu -20 292 92 319 287 53 67 chr11 100749345 100749627 -50033926 - HAL1 LINE L1 -1612 895 618 252 236 0 0 chr11 100749782 100749837 -50033716 - HAL1 LINE L1 -2114 393 339 367 360 102 36 chr11 100750217 100750450 -50033103 - L2 LINE L2 -1 3312 3096 3185 161 19 2 chr11 100750450 100750989 -50032564 - MER44D DNA MER2_type -1 604 2 367 360 102 36 chr11 100750989 100751225 -50032328 - L2 LINE L2 -217 3096 2812 320 368 50 18 chr11 100751276 100751616 -50031937 - L1M4 LINE L1 -1055 5091 4741 182 356 27 0 chr11 100751863 100751936 -50031617 + L2 LINE L2 3197 3271 -1 366 119 0 60 chr11 100752661 100752745 -50030808 + Charlie5 DNA MER1_type 2480 2558 -54 194 345 58 11 chr11 100754199 100754286 -50029267 - MIR SINE MIR -147 115 25 182 219 16 78 chr11 100754398 100754462 -50029091 + MIR SINE MIR 123 182 -80 357 297 183 17 chr11 100755515 100755690 -50027863 - MIR SINE MIR -6 256 53 337 313 46 20 chr11 100755970 100756135 -50027418 - MIR SINE MIR -4 204 36 212 0 36 0 chr11 100756181 100756209 -50027344 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1853 141 0 0 chr11 100756216 100756479 -50027074 - AluSx SINE Alu -21 291 29 393 22 0 0 chr11 100756586 100756632 -50026921 + (TG)n Simple_repeat Simple_repeat 2 47 0 365 385 87 0 chr11 100756701 100756919 -50026634 + MIR SINE MIR 11 247 -15 252 0 0 0 chr11 100757055 100757083 -50026470 + (CAA)n Simple_repeat Simple_repeat 2 29 0 233 206 0 29 chr11 100758085 100758153 -50025400 + GA-rich Low_complexity Low_complexity 3 68 0 1566 211 3 10 chr11 100758234 100758547 -50025006 + AluJo SINE Alu 1 311 -1 390 325 89 0 chr11 100758933 100759090 -50024463 - MIR SINE MIR -74 188 18 692 11 0 22 chr11 100759547 100759637 -50023916 + L1PA3 LINE L1 6068 6155 0 2095 129 30 82 chr11 100759916 100760356 -50023197 - MSTB LTR MaLR -9 417 1 748 114 0 9 chr11 100760539 100760644 -50022909 + AluSc SINE Alu 103 206 -103 364 167 14 42 chr11 100760648 100760720 -50022833 - MER5A DNA MER1_type -111 78 9 822 144 30 0 chr11 100760736 100760868 -50022685 + AluJo SINE Alu 1 136 -176 905 333 61 20 chr11 100761607 100762063 -50021490 - L3 LINE CR1 -84 1493 1019 366 286 125 40 chr11 100762126 100762350 -50021203 + MIR SINE MIR 20 262 0 477 309 143 23 chr11 100762744 100763003 -50020550 - L3 LINE CR1 -1045 532 243 2671 39 25 6 chr11 100763016 100763371 -50020182 + MLT2A1 LTR ERVL 1 362 -82 5044 225 22 52 chr11 100764299 100764367 -50019186 - L1MEc LINE L1 -1667 4977 4908 243 0 0 0 chr11 100764367 100764394 -50019159 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5044 225 22 52 chr11 100764394 100765679 -50017874 - L1MEc LINE L1 -1736 4908 3605 402 137 0 0 chr11 100765679 100765752 -50017801 - Alu SINE Alu -1 308 236 5044 225 22 52 chr11 100765752 100765958 -50017595 - L1MEc LINE L1 -3039 3605 3394 * 37277 78 6 8 chr11 100765952 100772110 -50011443 - L1PA6 LINE L1 0 6154 11 14491 150 40 11 chr11 100772123 100775417 -50008136 - L1PBa LINE L1 -3233 3629 243 1364 153 114 29 chr11 100775423 100775556 -50007997 - THE1C LTR MaLR -37 338 218 327 49 0 0 chr11 100775556 100775597 -50007956 + (GA)n Simple_repeat Simple_repeat 1 41 0 1364 153 114 29 chr11 100775597 100775770 -50007783 - THE1C LTR MaLR -157 218 6 1493 118 37 0 chr11 100775770 100776015 -50007538 - L1PBa LINE L1 -6609 254 1 2168 120 20 3 chr11 100776066 100776367 -50007186 - AluSc SINE Alu -1 308 3 1299 246 120 32 chr11 100776474 100777759 -50005794 - L1MEc LINE L1 -3326 3318 1960 329 251 131 55 chr11 100777812 100777995 -50005558 - L1MEc LINE L1 -4871 1671 1475 295 211 44 26 chr11 100778012 100778126 -50005427 - L1MEc LINE L1 -5226 1599 1484 1841 84 4 16 chr11 100778290 100778541 -50005012 - L1PA7 LINE L1 -8 6146 5899 332 294 13 65 chr11 100778994 100779147 -50004406 - MIR3 SINE MIR -2 206 62 22 88 0 0 chr11 100779269 100779326 -50004227 + AT_rich Low_complexity Low_complexity 1 57 0 321 305 61 0 chr11 100780078 100780160 -50003393 - L2 LINE L2 0 3272 3186 337 308 68 0 chr11 100780242 100780359 -50003194 + L2 LINE L2 3189 3313 0 26 64 0 0 chr11 100780533 100780580 -50002973 + AT_rich Low_complexity Low_complexity 1 47 0 452 317 55 15 chr11 100781151 100781350 -50002203 - MIR SINE MIR -39 223 17 666 294 68 28 chr11 100781373 100781625 -50001928 - MIR SINE MIR 0 262 1 368 336 43 50 chr11 100781647 100781927 -50001626 - L3 LINE CR1 -46 1531 1254 328 315 110 79 chr11 100781926 100782418 -50001135 - L2 LINE L2 -2 3311 2805 * 3922 196 34 12 chr11 100782453 100783332 -50000221 + L1MC3 LINE L1 6688 7585 -200 * 40136 46 24 3 chr11 100783330 100789566 -49993987 + L1PA2 LINE L1 2 6358 -1 711 303 22 0 chr11 100791938 100792166 -49991387 - ERVL LTR ERVL -1383 4271 4039 1571 204 86 17 chr11 100792204 100792610 -49990943 - MLT1E LTR MaLR 0 593 137 249 105 18 35 chr11 100792972 100793029 -49990524 + (TA)n Simple_repeat Simple_repeat 2 57 0 823 202 0 0 chr11 100793029 100793158 -49990395 + AluJo SINE Alu 125 253 -59 255 350 27 36 chr11 100793228 100793396 -49990157 + MIR SINE MIR 30 206 -56 7800 16 0 1 chr11 100793813 100795072 -49988481 + L1PA2 LINE L1 4897 6154 -1 956 171 9 19 chr11 100795077 100795288 -49988265 + L1MC3 LINE L1 7577 7785 0 1160 287 45 36 chr11 100797661 100797926 -49985627 - ERVL LTR ERVL -1455 4309 4048 1927 231 103 18 chr11 100797926 100798471 -49985082 - MLT1E LTR MaLR 0 593 3 1160 287 45 36 chr11 100798471 100798766 -49984787 - ERVL LTR ERVL -1716 4048 3744 231 181 42 28 chr11 100798997 100799069 -49984484 + (CATATA)n Simple_repeat Simple_repeat 5 77 0 669 208 7 14 chr11 100799103 100799247 -49984306 - LTR40a LTR ERVL -65 454 312 973 347 60 21 chr11 100799269 100799970 -49983583 - ERVL LTR ERVL -2042 3612 2924 229 278 178 11 chr11 100800446 100800536 -49983017 - MLT1J1 LTR MaLR -113 333 229 363 268 0 71 chr11 100800584 100800688 -49982865 - MLT1J1 LTR MaLR -287 159 64 4636 203 46 12 chr11 100800688 100801694 -49981859 - MER45B DNA AcHobo 0 1040 1 363 268 0 71 chr11 100801694 100801716 -49981837 - MLT1J1 LTR MaLR -382 64 42 294 217 124 8 chr11 100801818 100801893 -49981660 - MIR SINE MIR -16 246 181 198 0 0 0 chr11 100801893 100801915 -49981638 + (TTA)n Simple_repeat Simple_repeat 2 23 0 294 217 124 8 chr11 100801915 100801996 -49981557 - MIR SINE MIR -81 181 64 420 304 66 39 chr11 100802155 100802336 -49981217 - L3 LINE CR1 0 1577 1392 354 294 29 101 chr11 100802647 100802859 -49980694 + MIR SINE MIR 3 206 -56 1561 95 4 16 chr11 100803098 100803341 -49980212 - L1MA4 LINE L1 -6 6294 6055 2853 75 0 0 chr11 100803344 100803715 -49979838 + L1PA8 LINE L1 5801 6171 -1 21 57 0 0 chr11 100803747 100803782 -49979771 + AT_rich Low_complexity Low_complexity 1 35 0 2093 146 26 26 chr11 100803985 100804363 -49979190 + MSTB LTR MaLR 1 378 -48 6705 70 3 2 chr11 100804648 100805894 -49977659 + L1PA7 LINE L1 4897 6143 -11 284 276 0 11 chr11 100806476 100806563 -49976990 + LTR67 LTR ERVL 459 544 -13 635 173 65 16 chr11 100806788 100806973 -49976580 - L1M4 LINE L1 -989 5157 4964 693 166 40 0 chr11 100806980 100807131 -49976422 + L1MA9 LINE L1 6051 6207 -105 1569 106 0 0 chr11 100807762 100807980 -49975573 - L1PB3 LINE L1 -2 6152 5935 23 78 0 0 chr11 100808046 100808097 -49975456 + AT_rich Low_complexity Low_complexity 1 51 0 191 35 0 35 chr11 100808151 100808180 -49975373 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1083 75 0 0 chr11 100808978 100809124 -49974429 + (GAAA)n Simple_repeat Simple_repeat 1 146 0 312 320 41 0 chr11 100809456 100809553 -49974000 + L2 LINE L2 3172 3272 0 222 37 0 0 chr11 100810545 100810572 -49972981 + (GA)n Simple_repeat Simple_repeat 2 28 0 1686 264 50 4 chr11 100810576 100811115 -49972438 + MER90 LTR ERV1 9 572 -3 210 143 0 0 chr11 100811122 100811157 -49972396 + (CATA)n Simple_repeat Simple_repeat 2 36 0 239 206 59 15 chr11 100811380 100811448 -49972105 + MIR SINE MIR 163 233 -29 328 238 53 80 chr11 100812464 100812615 -49970938 - L1ME4a LINE L1 -37 6084 5938 2411 149 23 25 chr11 100812616 100813051 -49970502 - Tigger2a DNA MER2_type 0 434 1 200 381 11 58 chr11 100815452 100815641 -49967912 + L2 LINE L2 2849 3028 -244 2389 263 61 15 chr11 100816761 100817494 -49966059 + L2 LINE L2 1788 2554 -760 645 375 99 31 chr11 100818161 100818853 -49964700 - L2 LINE L2 0 3272 2554 308 284 95 11 chr11 100818992 100819087 -49964466 - MIR SINE MIR -79 129 27 439 213 11 0 chr11 100820933 100821027 -49962526 + MIR SINE MIR 74 168 -94 336 24 0 0 chr11 100821301 100821342 -49962211 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr11 100821819 100821840 -49961713 + AT_rich Low_complexity Low_complexity 1 21 0 190 339 47 47 chr11 100822707 100822834 -49960719 - L2 LINE L2 0 3313 3187 266 337 85 15 chr11 100823044 100823243 -49960310 - MIR SINE MIR -46 216 4 297 242 74 21 chr11 100823615 100823710 -49959843 + L2 LINE L2 3173 3272 0 383 357 25 45 chr11 100824346 100824544 -49959009 + MIR SINE MIR 3 197 -65 1931 126 9 25 chr11 100824544 100824861 -49958692 + AluSx SINE Alu 1 312 0 383 357 25 45 chr11 100824861 100824919 -49958634 + MIR SINE MIR 197 255 -7 416 326 127 21 chr11 100825245 100825481 -49958072 + MIR SINE MIR 2 262 0 296 311 179 20 chr11 100825626 100825777 -49957776 + MIR3 SINE MIR 15 189 -19 718 286 31 20 chr11 100826351 100826606 -49956947 - MIR SINE MIR -3 259 2 607 288 26 35 chr11 100826752 100826981 -49956572 - MIR SINE MIR -34 228 2 323 206 49 10 chr11 100829784 100829886 -49953667 + L1ME4a LINE L1 5968 6073 -48 211 421 136 8 chr11 100830281 100830523 -49953030 - L2 LINE L2 -5 3267 2995 1367 172 12 4 chr11 100830536 100830786 -49952767 + L1M3f LINE L1 1 252 -5076 543 263 15 7 chr11 100830786 100830923 -49952630 - AluJo SINE Alu -133 179 42 687 169 42 0 chr11 100830942 100831084 -49952469 - L1M3f LINE L1 -4552 776 629 2525 167 19 56 chr11 100831103 100831637 -49951916 + L1M3f LINE L1 263 776 -4552 1049 243 4 19 chr11 100831656 100831915 -49951638 + AluJo SINE Alu 42 296 -16 4103 238 26 24 chr11 100831927 100833357 -49950196 + L1M3f LINE L1 772 2204 -4124 28078 60 3 0 chr11 100833364 100837128 -49946425 + L1P LINE L1 1 3775 -2371 466 259 49 70 chr11 100837229 100837697 -49945856 + MLT1F1 LTR MaLR 107 561 0 325 195 80 44 chr11 100837898 100838011 -49945542 - L2 LINE L2 -15 3298 3182 288 224 79 40 chr11 100838143 100838219 -49945334 + MER69 DNA AcHobo 2 80 -1146 186 103 0 0 chr11 100838240 100838269 -49945284 + (CA)n Simple_repeat Simple_repeat 1 29 0 260 186 0 14 chr11 100838293 100838363 -49945190 + C-rich Low_complexity Low_complexity 3 71 0 180 200 0 0 chr11 100838414 100838464 -49945089 + C-rich Low_complexity Low_complexity 1 50 0 2367 150 25 25 chr11 100838835 100839269 -49944284 + Tigger2a DNA MER2_type 1 434 0 328 238 53 80 chr11 100839270 100839421 -49944132 + L1ME4a LINE L1 5938 6084 -37 9055 67 2 1 chr11 100840419 100841686 -49941867 + L1P LINE L1 3991 5258 -888 742 136 32 0 chr11 100842148 100842273 -49941280 - FLAM_C SINE Alu -12 131 3 364 167 14 42 chr11 100842291 100842363 -49941190 + MER5A DNA MER1_type 9 78 -111 763 120 0 9 chr11 100842367 100842475 -49941078 - AluSc SINE Alu -103 206 100 2095 129 30 82 chr11 100842656 100843096 -49940457 + MSTB LTR MaLR 1 417 -9 692 11 0 22 chr11 100843375 100843465 -49940088 - L1PA3 LINE L1 0 6155 6068 263 31 0 0 chr11 100843465 100843497 -49940056 + tRNA-Ile-ATT tRNA tRNA 8 39 -38 280 340 96 6 chr11 100843916 100844072 -49939481 + MIR SINE MIR 18 187 -75 270 221 39 26 chr11 100844409 100844486 -49939067 - MLT1G1 LTR MaLR -513 82 5 348 327 25 44 chr11 100845493 100845652 -49937901 - MIR SINE MIR -105 157 2 192 77 0 0 chr11 100845741 100845767 -49937786 + (TATAA)n Simple_repeat Simple_repeat 4 29 0 439 268 52 26 chr11 100845809 100845962 -49937591 - MIR SINE MIR 0 262 106 425 255 27 33 chr11 100847203 100847387 -49936166 - L1M4 LINE L1 -3772 2374 2192 1587 287 35 34 chr11 100847407 100848195 -49935358 + L1PBa LINE L1 3 791 -6072 11392 36 6 6 chr11 100848314 100850492 -49933061 + L1PA4 LINE L1 4001 6151 -4 8518 183 25 7 chr11 100850496 100852338 -49931215 + L1 LINE L1 2930 4806 -1340 593 302 133 0 chr11 100852702 100852927 -49930626 - MIR SINE MIR -6 256 2 885 222 10 0 chr11 100853985 100854192 -49929361 - MER3 DNA MER1_type 0 209 1 486 284 74 42 chr11 100855042 100855232 -49928321 - MIR SINE MIR -13 249 54 435 319 84 24 chr11 100856481 100856694 -49926859 + MIR SINE MIR 9 234 -28 766 197 48 128 chr11 100856770 100857060 -49926493 + MLT1B LTR MaLR 3 235 -155 739 184 24 42 chr11 100857071 100857239 -49926314 - MLT1A2 LTR MaLR -198 176 12 386 207 54 9 chr11 100857420 100857531 -49926022 - MLT1A2 LTR MaLR -258 116 1 284 322 129 23 chr11 100857638 100857809 -49925744 - L2 LINE L2 -70 3202 3014 271 172 31 47 chr11 100857845 100857909 -49925644 + L2 LINE L2 3251 3313 0 236 345 24 12 chr11 100858033 100858117 -49925436 + MIR SINE MIR 16 100 -108 212 152 43 0 chr11 100858373 100858419 -49925134 - L2 LINE L2 0 3313 3266 28 29 0 0 chr11 100858472 100858507 -49925046 + AT_rich Low_complexity Low_complexity 1 35 0 566 272 38 13 chr11 100858916 100859074 -49924479 - MIR3 SINE MIR -4 204 43 896 206 0 0 chr11 100859074 100859229 -49924324 - MER58A DNA MER1_type 0 155 1 248 291 156 80 chr11 100859446 100859645 -49923908 - MIR SINE MIR -13 249 36 217 349 60 47 chr11 100859993 100860142 -49923411 + MIR3 SINE MIR 44 194 -14 343 380 68 6 chr11 100860664 100860827 -49922726 + L3 LINE CR1 1403 1575 -2 305 236 42 0 chr11 100861251 100861323 -49922230 - L2 LINE L2 -1 3312 3238 463 276 32 32 chr11 100861515 100861638 -49921915 - MIR3 SINE MIR -35 173 51 465 263 123 18 chr11 100862481 100862652 -49920901 - MIR SINE MIR -15 247 59 884 310 56 39 chr11 100863419 100863774 -49919779 - LTR16A1 LTR ERVL -51 406 46 3409 85 2 2 chr11 100863799 100864248 -49919305 + L1PA11 LINE L1 5503 5951 -223 1304 103 69 0 chr11 100864348 100864552 -49919001 + L1PA11 LINE L1 5957 6174 0 869 313 57 52 chr11 100864727 100865347 -49918206 - HERVL LTR ERVL -310 5344 4722 283 345 5 37 chr11 100865618 100865809 -49917744 - HERVL LTR ERVL -1714 3940 3756 387 0 0 0 chr11 100865909 100865952 -49917601 + (TC)n Simple_repeat Simple_repeat 2 44 0 243 0 0 0 chr11 100865951 100865978 -49917575 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 679 352 44 21 chr11 100866029 100866504 -49917049 - HERVL LTR ERVL -1897 3757 3272 1184 313 16 3 chr11 100866547 100866911 -49916642 - HERVL LTR ERVL -1976 3020 2652 2324 149 37 17 chr11 100867011 100867314 -49916239 + L1PB3 LINE L1 1260 1555 -5308 2260 141 8 19 chr11 100867314 100867682 -49915871 - THE1B LTR MaLR 0 364 1 2324 149 37 17 chr11 100867682 100868217 -49915336 + L1PB3 LINE L1 1555 2118 -4745 * 12779 201 34 17 chr11 100868216 100872153 -49911400 + L1PB3 LINE L1 2488 6519 -351 348 24 0 0 chr11 100872153 100872194 -49911359 + (CA)n Simple_repeat Simple_repeat 2 42 0 12779 201 34 17 chr11 100872194 100872549 -49911004 + L1PB3 LINE L1 6519 6866 -4 231 36 0 0 chr11 100872561 100872589 -49910964 + (CA)n Simple_repeat Simple_repeat 2 29 0 4644 250 64 85 chr11 100872591 100875170 -49908383 - L1MDa LINE L1 -3954 2586 62 189 143 32 16 chr11 100876054 100876117 -49907436 + (TA)n Simple_repeat Simple_repeat 1 64 0 1904 247 76 38 chr11 100876119 100876674 -49906879 + MER69 DNA AcHobo 111 686 -540 296 169 28 0 chr11 100876662 100876733 -49906820 - MER69 DNA AcHobo -148 2378 2306 * 1333 195 22 24 chr11 100876722 100877092 -49906461 - MER69 DNA AcHobo -651 1875 1507 323 248 121 6 chr11 100877069 100877226 -49906327 + MER69 DNA AcHobo 2352 2526 0 * 1815 186 62 5 chr11 100877412 100877784 -49905769 + MLT2C1 LTR ERVL 1 393 -4 301 304 141 15 chr11 100878139 100878274 -49905279 - MIR SINE MIR -52 210 59 30 0 0 0 chr11 100878561 100878591 -49904962 + AT_rich Low_complexity Low_complexity 1 30 0 316 272 325 21 chr11 100878832 100879115 -49904438 + L3 LINE CR1 1084 1452 -125 367 335 40 7 chr11 100879358 100879510 -49904043 + MIR SINE MIR 105 261 -1 306 354 69 0 chr11 100879546 100879690 -49903863 - MIR SINE MIR -73 189 36 407 279 110 0 chr11 100881793 100881929 -49901624 + MIR SINE MIR 106 256 -6 206 354 15 0 chr11 100882776 100882841 -49900712 - L2 LINE L2 -4 3268 3203 184 341 45 11 chr11 100882848 100882936 -49900617 + MIR SINE MIR 40 130 -132 24 0 0 0 chr11 100883902 100883926 -49899627 + AT_rich Low_complexity Low_complexity 1 24 0 215 220 20 20 chr11 100883936 100883986 -49899567 + L2 LINE L2 3216 3265 -7 27 0 0 0 chr11 100884513 100884540 -49899013 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr11 100885488 100885518 -49898035 + AT_rich Low_complexity Low_complexity 1 30 0 16356 42 1 1 chr11 100885518 100888297 -49895256 - L1PA3 LINE L1 -3 6152 3373 560 187 50 28 chr11 100889330 100889503 -49894050 - MER57A LTR ERV1 0 403 188 508 256 38 25 chr11 100889497 100889657 -49893896 - MER93b LTR ERV1 -211 162 1 * 3181 182 15 2 chr11 100889658 100890251 -49893302 - L1MB7 LINE L1 -34 6150 5550 389 129 0 0 chr11 100890269 100890331 -49893222 - L1MA9 LINE L1 -4 6308 6247 1861 173 12 3 chr11 100890331 100890660 -49892893 + L1MA9 LINE L1 5680 6011 -301 237 304 0 0 chr11 100891000 100891056 -49892497 - L2 LINE L2 -12 3260 3205 935 183 35 0 chr11 100891171 100891340 -49892213 - MER20 DNA MER1_type 0 219 45 621 201 83 7 chr11 100891360 100891504 -49892049 + MIR SINE MIR 87 241 -21 199 269 19 0 chr11 100891471 100891523 -49892030 + L2 LINE L2 3212 3264 -8 * 371 354 18 0 chr11 100891513 100891626 -49891927 - L2 LINE L2 -5 3267 3153 3729 49 4 25 chr11 100891647 100892137 -49891416 + L1PA5 LINE L1 5668 6147 -7 238 379 15 23 chr11 100892206 100892338 -49891215 + L2 LINE L2 3137 3267 -5 371 359 125 36 chr11 100892783 100893167 -49890386 + L2 LINE L2 2852 3269 -3 239 245 0 20 chr11 100895857 100895906 -49887647 + MIR SINE MIR 34 81 -181 275 293 164 54 chr11 100895936 100896380 -49887173 + L2 LINE L2 2217 2709 -605 2562 147 53 93 chr11 100896653 100896759 -49886794 + L1MB4 LINE L1 5541 5650 -530 280 103 0 0 chr11 100896759 100896798 -49886755 + tRNA-Glu-GAG tRNA tRNA 1 39 -36 2562 147 53 93 chr11 100896798 100897258 -49886295 + L1MB4 LINE L1 5650 6121 -59 4116 177 15 20 chr11 100897273 100898028 -49885525 + L1MC1 LINE L1 5520 6272 -61 1888 155 21 115 chr11 100898028 100898505 -49885048 - MSTB1 LTR MaLR 0 432 1 4116 177 15 20 chr11 100898505 100898567 -49884986 + L1MC1 LINE L1 6272 6333 0 465 339 83 56 chr11 100898687 100899389 -49884164 + L2 LINE L2 1710 2430 -884 366 252 19 0 chr11 100899387 100899490 -49884063 + MIR SINE MIR 158 262 0 * 4924 175 17 29 chr11 100899820 100900515 -49883038 - L1MA4 LINE L1 -13 6287 5605 2201 56 0 7 chr11 100900515 100900785 -49882768 - AluY SINE Alu -1 310 43 4924 175 17 29 chr11 100900785 100901070 -49882483 - L1MA4 LINE L1 -695 5605 5318 493 313 136 23 chr11 100901465 100901775 -49881778 - HERV16 LTR ERVL -3169 2595 2251 876 353 71 12 chr11 100901900 100902773 -49880780 - HERV16 LTR ERVL -2952 2044 1056 1741 309 62 32 chr11 100902835 100903751 -49879802 - HERV16 LTR ERVL -4025 971 28 501 268 95 45 chr11 100903877 100904120 -49879433 - LTR16A1 LTR ERVL -202 255 1 1596 181 21 17 chr11 100904564 100904852 -49878701 + AluJo SINE Alu 1 289 -23 289 325 145 0 chr11 100905586 100905701 -49877852 - MIR3 SINE MIR -28 180 49 493 280 173 9 chr11 100905701 100905926 -49877627 + MIR SINE MIR 1 262 0 321 284 71 16 chr11 100905983 100906110 -49877443 + MIR SINE MIR 48 181 -81 341 330 31 20 chr11 100906297 100906492 -49877061 - MIR SINE MIR -62 146 1 1998 90 7 21 chr11 100907109 100907388 -49876165 - AluSq SINE Alu -2 311 37 338 213 12 25 chr11 100907650 100907730 -49875823 - MIR SINE MIR -105 157 79 351 316 28 85 chr11 100907791 100908038 -49875515 + MIR SINE MIR 20 252 -10 1947 158 37 70 chr11 100908402 100908832 -49874721 - L1MA9 LINE L1 0 6312 5897 * 4805 252 72 50 chr11 100908830 100909416 -49874137 - L1 LINE L1 -2913 3297 2725 226 304 0 18 chr11 100909416 100909472 -49874081 + Tigger5 DNA MER2_type 1 55 -2268 4805 252 72 50 chr11 100909472 100912339 -49871214 - L1 LINE L1 -3485 2725 5 480 276 43 71 chr11 100912345 100912555 -49870998 - MIR SINE MIR -54 208 5 2424 69 0 0 chr11 100912610 100912901 -49870652 - AluY SINE Alu -19 292 2 221 289 0 75 chr11 100913931 100914090 -49869463 + A-rich Low_complexity Low_complexity 4 150 0 1606 299 96 48 chr11 100914894 100915951 -49867602 - L2 LINE L2 -526 2788 1682 204 217 22 0 chr11 100916318 100916364 -49867189 - L2 LINE L2 -5 3308 3262 2199 112 3 13 chr11 100917030 100917342 -49866211 + AluSx SINE Alu 1 309 -3 813 215 0 0 chr11 100917373 100917557 -49865996 - FLAM_A SINE Alu 0 184 1 1581 179 77 87 chr11 100918049 100918441 -49865112 - MLT1B LTR MaLR 0 390 3 585 278 26 12 chr11 100918483 100918772 -49864781 + LTR16A LTR ERVL 120 447 -3 332 362 107 6 chr11 100919073 100919250 -49864303 - MIR SINE MIR -48 214 20 241 298 190 16 chr11 100920473 100920594 -49862959 + MIR SINE MIR 48 189 -73 602 223 147 38 chr11 100920698 100920882 -49862671 - MIR SINE MIR -4 258 55 346 248 124 18 chr11 100922068 100922181 -49861372 + L2 LINE L2 3189 3313 0 223 184 0 41 chr11 100922191 100922240 -49861313 - L2 LINE L2 -10 3303 3257 387 119 0 167 chr11 100922296 100922380 -49861173 - LTR8A LTR ERV1 -2 725 656 2187 24 50 40 chr11 100922414 100922711 -49860842 + SVA Other Other 2 301 -1085 316 133 0 0 chr11 100922834 100922879 -49860674 + L1MC4 LINE L1 7685 7729 -313 744 261 114 4 chr11 100922882 100923127 -49860426 + L1MC4 LINE L1 7770 8041 -1 22 0 0 0 chr11 100923129 100923151 -49860402 + AT_rich Low_complexity Low_complexity 1 22 0 2644 175 105 38 chr11 100923151 100923172 -49860381 - LTR8A LTR ERV1 -57 670 652 1967 171 0 0 chr11 100923172 100923477 -49860076 + AluSx SINE Alu 1 305 -7 2644 175 105 38 chr11 100923477 100924083 -49859470 - LTR8A LTR ERV1 -75 652 1 219 244 39 26 chr11 100924564 100924642 -49858911 + GA-rich Low_complexity Low_complexity 2 80 0 306 303 11 11 chr11 100924695 100924784 -49858769 - MER5A DNA MER1_type -2 187 99 6601 68 14 42 chr11 100929862 100930840 -49852713 - SVA Other Other -6 1380 430 800 65 40 16 chr11 100930853 100930977 -49852576 - SVA Other Other -520 866 740 180 0 0 0 chr11 100931190 100931210 -49852343 + (CGG)n Simple_repeat Simple_repeat 1 20 0 1450 97 0 0 chr11 100933712 100933934 -49849619 + AluSg/x SINE Alu 103 324 0 330 302 47 24 chr11 100934220 100934475 -49849078 - L1MEc LINE L1 -4703 1693 1433 25 0 0 0 chr11 100934773 100934798 -49848755 + AT_rich Low_complexity Low_complexity 1 25 0 509 268 8 92 chr11 100935018 100935208 -49848345 - L1ME3 LINE L1 -206 5956 5788 1588 143 82 21 chr11 100935208 100935488 -49848065 + AluJo SINE Alu 1 297 -15 509 268 8 92 chr11 100935488 100935536 -49848017 - L1ME3 LINE L1 -374 5788 5738 2189 125 0 0 chr11 100935891 100936195 -49847358 + AluSx SINE Alu 1 304 -8 270 300 33 0 chr11 100936592 100936682 -49846871 + GA-rich Low_complexity Low_complexity 4 96 0 431 209 91 74 chr11 100937051 100937409 -49846144 + L1MC/D LINE L1 5112 5476 -743 243 275 68 49 chr11 100937833 100938008 -49845545 - MIR SINE MIR -51 211 37 387 0 0 0 chr11 100938434 100938477 -49845076 + (CA)n Simple_repeat Simple_repeat 2 44 0 275 0 29 0 chr11 100938476 100938511 -49845042 + (GA)n Simple_repeat Simple_repeat 2 37 0 * 1365 210 10 43 chr11 100939750 100940050 -49843503 + AluJo SINE Alu 1 290 -22 198 271 259 12 chr11 100940114 100940199 -49843354 + L2 LINE L2 3154 3259 -13 434 259 56 37 chr11 100940698 100940860 -49842693 + LTR16C LTR ERVL 327 491 0 1528 212 63 44 chr11 100940898 100941309 -49842244 - MER97c DNA MER1_type? -670 420 2 395 338 33 7 chr11 100941630 100941781 -49841772 - L2 LINE L2 0 3313 3159 1881 162 46 32 chr11 100942395 100942765 -49840788 - THE1C LTR MaLR 0 375 1 193 238 0 0 chr11 100943418 100943460 -49840093 - L2 LINE L2 -70 3202 3161 315 0 0 0 chr11 100944272 100944307 -49839246 + (CA)n Simple_repeat Simple_repeat 2 36 0 334 272 23 12 chr11 100945442 100945615 -49837938 + (TA)n Simple_repeat Simple_repeat 1 175 0 272 150 62 0 chr11 100945639 100945719 -49837834 + (TA)n Simple_repeat Simple_repeat 1 85 0 764 197 0 36 chr11 100946225 100946362 -49837191 - FRAM SINE Alu -44 132 1 221 290 276 7 chr11 100946384 100946529 -49837024 + L2 LINE L2 3088 3271 -1 31382 45 2 4 chr11 100946583 100952066 -49831487 + L1P1 LINE L1 1 5460 -695 870 276 119 47 chr11 100952428 100952500 -49831053 + L2 LINE L2 2634 2699 -614 1490 165 19 89 chr11 100952500 100952816 -49830737 + AluJo SINE Alu 1 294 -18 870 276 119 47 chr11 100952816 100952982 -49830571 + L2 LINE L2 2699 2852 -461 1965 170 124 9 chr11 100952982 100953435 -49830118 - MLT1D LTR MaLR 0 505 1 870 276 119 47 chr11 100953435 100953802 -49829751 + L2 LINE L2 2852 3313 0 402 85 0 0 chr11 100953834 100953893 -49829660 + (CA)n Simple_repeat Simple_repeat 1 59 0 301 275 77 0 chr11 100953947 100954038 -49829515 + MIR SINE MIR 129 226 -36 801 253 111 6 chr11 100954435 100954751 -49828802 + Charlie7 DNA MER1_type 368 716 -1896 230 198 21 21 chr11 100954781 100954877 -49828676 + Charlie7 DNA MER1_type 2454 2549 -63 268 336 40 0 chr11 100955013 100955138 -49828415 - L2 LINE L2 -211 3061 2932 207 0 0 0 chr11 100955304 100955327 -49828226 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 282 229 68 102 chr11 100955333 100955408 -49828145 + MIR SINE MIR 26 97 -165 1848 172 34 0 chr11 100955408 100955705 -49827848 - AluSx SINE Alu -5 307 1 282 229 68 102 chr11 100955705 100955747 -49827806 + MIR SINE MIR 97 139 -123 22 0 0 0 chr11 100957182 100957204 -49826349 + AT_rich Low_complexity Low_complexity 1 22 0 330 80 0 0 chr11 100957259 100957309 -49826244 - Alu SINE Alu -3 298 249 2244 110 3 0 chr11 100957310 100957610 -49825943 - AluSx SINE Alu -11 301 1 2466 220 34 14 chr11 100957611 100958260 -49825293 - MER63C DNA MER1_type -248 682 21 255 255 0 64 chr11 100959415 100959509 -49824044 + MIR SINE MIR 104 191 -71 760 241 58 8 chr11 100959511 100959522 -49824031 + MER63C DNA MER1_type 670 679 -381 2387 67 3 0 chr11 100959522 100959820 -49823733 + AluY SINE Alu 1 299 -12 760 241 58 8 chr11 100959820 100960049 -49823504 + MER63C DNA MER1_type 679 922 -8 531 320 95 29 chr11 100960683 100961214 -49822339 - L2 LINE L2 0 3272 2481 23 54 0 0 chr11 100961318 100961355 -49822198 + AT_rich Low_complexity Low_complexity 1 37 0 363 343 41 6 chr11 100962095 100962267 -49821286 + MIR SINE MIR 83 260 -2 207 297 95 0 chr11 100963211 100963285 -49820268 + MIR SINE MIR 35 115 -93 273 314 4 2 chr11 100964340 100964433 -49819120 - MIR SINE MIR -85 123 30 224 30 30 0 chr11 100964611 100964644 -49818909 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 1928 136 4 0 chr11 100964644 100964923 -49818630 - AluSx SINE Alu -32 280 1 795 233 6 6 chr11 100966004 100966180 -49817373 - AluJb SINE Alu 0 312 137 300 247 45 0 chr11 100966611 100966700 -49816853 - LTR16A1 LTR ERVL -81 376 284 640 267 20 0 chr11 100966770 100966916 -49816637 - MER58A DNA MER1_type 0 150 2 416 276 55 65 chr11 100966917 100967069 -49816484 - LTR16A1 LTR ERVL -185 272 123 961 205 11 0 chr11 100967069 100967254 -49816299 - MER5A DNA MER1_type 0 189 3 416 276 55 65 chr11 100967254 100967376 -49816177 - LTR16A1 LTR ERVL -334 123 1 204 40 0 0 chr11 100968068 100968093 -49815460 + (A)n Simple_repeat Simple_repeat 1 25 0 603 234 64 14 chr11 100968245 100968386 -49815167 + FRAM SINE Alu 1 148 -28 285 29 0 0 chr11 100968386 100968420 -49815133 + (CA)n Simple_repeat Simple_repeat 2 35 0 240 35 0 0 chr11 100968478 100968507 -49815046 + (CATATA)n Simple_repeat Simple_repeat 6 34 0 644 254 64 18 chr11 100968917 100969197 -49814356 + L1ME3A LINE L1 5582 5874 -296 288 295 95 19 chr11 100969025 100969235 -49814318 + L1MB1 LINE L1 5697 5922 -246 * 4300 256 36 40 chr11 100969223 100970910 -49812643 + L1ME LINE L1 21 1706 -4850 1196 261 70 63 chr11 100970983 100971784 -49811769 + L1M1 LINE L1 2752 3634 -4112 508 169 11 90 chr11 100972349 100972527 -49811026 + L1MC5 LINE L1 7751 7914 -47 249 29 0 0 chr11 100972591 100972626 -49810927 - L1MA3 LINE L1 0 6305 6271 3373 231 58 31 chr11 100972761 100973910 -49809643 + L1ME LINE L1 4933 6120 -841 2065 84 0 11 chr11 100973910 100974183 -49809370 + AluSx SINE Alu 17 286 -26 3373 231 58 31 chr11 100974183 100974321 -49809232 + L1ME LINE L1 6120 6253 -708 230 273 0 0 chr11 100974319 100974396 -49809157 + L1MC3 LINE L1 6075 6151 -1634 * 217 333 197 5 chr11 100974428 100974626 -49808927 + L3 LINE CR1 801 1036 -541 634 120 0 88 chr11 100974629 100974754 -49808799 - AluSg/x SINE Alu -1 308 195 229 322 23 11 chr11 100974969 100975056 -49808497 - L2 LINE L2 -1 3312 3225 196 346 0 0 chr11 100975650 100975702 -49807851 - L2 LINE L2 -18 3254 3203 1927 119 26 20 chr11 100976084 100976387 -49807166 - AluSx SINE Alu 0 312 8 1996 152 10 0 chr11 100977102 100977476 -49806077 - AluSx SINE Alu 0 377 1 1088 174 27 0 chr11 100978314 100978498 -49805055 + MER5A DNA MER1_type 1 189 0 225 94 0 0 chr11 100981232 100981264 -49802289 + (CA)n Simple_repeat Simple_repeat 1 32 0 268 301 102 50 chr11 100981905 100982053 -49801500 + MIR3 SINE MIR 1 165 -81 365 247 86 0 chr11 100982054 100982147 -49801406 - L2 LINE L2 -20 3252 3152 221 259 161 25 chr11 100982156 100982237 -49801316 + MIR SINE MIR 166 257 -5 475 259 22 29 chr11 100983099 100983238 -49800315 - MIR SINE MIR -3 259 122 578 214 116 35 chr11 100984640 100984925 -49798628 + L1ME4a LINE L1 5814 6121 0 1518 224 39 45 chr11 100986378 100986843 -49796710 + MLT1C LTR MaLR 6 467 0 259 373 18 125 chr11 100986904 100987287 -49796266 + L2 LINE L2 2925 3266 -6 584 296 18 12 chr11 100987664 100987833 -49795720 + MIR SINE MIR 22 191 -71 1162 183 75 14 chr11 100989514 100989809 -49793744 - LTR54B LTR ERV1 -11 487 175 998 159 24 60 chr11 100989887 100990184 -49793369 - THE1A LTR MaLR 0 355 72 219 139 0 0 chr11 100991673 100991709 -49791844 + (T)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr11 100991853 100991874 -49791679 + AT_rich Low_complexity Low_complexity 1 21 0 279 130 0 0 chr11 100993408 100993462 -49790091 + (T)n Simple_repeat Simple_repeat 1 54 0 213 39 0 0 chr11 100993725 100993751 -49789802 + (T)n Simple_repeat Simple_repeat 1 26 0 2150 130 0 0 chr11 100994224 100994532 -49789021 - AluSx SINE Alu -4 308 1 30 0 0 0 chr11 100994535 100994565 -49788988 + AT_rich Low_complexity Low_complexity 1 30 0 219 36 0 0 chr11 100996567 100996595 -49786958 + (T)n Simple_repeat Simple_repeat 1 28 0 1976 118 0 29 chr11 100998421 100998559 -49784994 + AluSx SINE Alu 1 142 -170 2236 120 0 3 chr11 100998559 100998858 -49784695 + AluSg SINE Alu 2 299 -11 1976 118 0 29 chr11 100998858 100999025 -49784528 + AluSx SINE Alu 142 297 -15 312 298 177 11 chr11 101001849 101002030 -49781523 - MIR SINE MIR -3 259 49 21 0 0 0 chr11 101002615 101002636 -49780917 + AT_rich Low_complexity Low_complexity 1 21 0 637 218 90 81 chr11 101002932 101003143 -49780410 - MIR SINE MIR -41 221 9 240 303 110 48 chr11 101006432 101006577 -49776976 - L2 LINE L2 -1 3271 3118 22 0 0 0 chr11 101007785 101007807 -49775746 + AT_rich Low_complexity Low_complexity 1 22 0 504 168 84 0 chr11 101008231 101008338 -49775215 + MER53 DNA DNA 1 116 -73 592 263 8 0 chr11 101008555 101008673 -49774880 - MER5A DNA MER1_type 0 189 71 422 37 0 0 chr11 101008677 101008731 -49774822 - L1PA7 LINE L1 -710 5444 5391 5726 53 3 1 chr11 101008731 101009436 -49774117 + L1PA7 LINE L1 5437 6150 -4 311 254 15 0 chr11 101009436 101009503 -49774050 - MER5A DNA MER1_type -120 69 2 1255 194 5 0 chr11 101009520 101009742 -49773811 - MER58A DNA MER1_type -1 223 1 310 296 120 86 chr11 101009777 101011173 -49772380 - L2 LINE L2 -1189 2125 682 22 0 0 0 chr11 101011660 101011682 -49771871 + AT_rich Low_complexity Low_complexity 1 22 0 846 217 12 0 chr11 101011760 101011921 -49771632 + FAM SINE Alu 4 166 -9 393 277 168 19 chr11 101012810 101012965 -49770588 - MIR3 SINE MIR -7 201 24 21 36 0 0 chr11 101014004 101014032 -49769521 + AT_rich Low_complexity Low_complexity 1 28 0 321 312 97 21 chr11 101015058 101015244 -49768309 - MIR SINE MIR 0 262 63 375 276 26 90 chr11 101015628 101015784 -49767769 - L2 LINE L2 -4 3309 3164 183 167 0 0 chr11 101016548 101016590 -49766963 + CT-rich Low_complexity Low_complexity 2 43 0 250 268 61 37 chr11 101016650 101016732 -49766821 + MER5B DNA MER1_type 4 87 -91 2089 128 0 0 chr11 101018651 101018940 -49764613 - AluSq SINE Alu -24 289 1 34 69 0 29 chr11 101019188 101019290 -49764263 + AT_rich Low_complexity Low_complexity 1 99 0 270 361 23 31 chr11 101019297 101019427 -49764126 + L2 LINE L2 3144 3272 0 425 273 134 17 chr11 101019516 101019688 -49763865 + MIR SINE MIR 2 193 -69 22 56 0 0 chr11 101020327 101020363 -49763190 + AT_rich Low_complexity Low_complexity 1 36 0 469 309 52 56 chr11 101020595 101020847 -49762706 - MIR SINE MIR -7 255 5 187 259 118 47 chr11 101022131 101022216 -49761337 - L2 LINE L2 0 3313 3223 194 54 0 54 chr11 101023477 101023514 -49760039 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 27 49 0 0 chr11 101025822 101025863 -49757690 + AT_rich Low_complexity Low_complexity 1 41 0 260 53 26 0 chr11 101027248 101027286 -49756267 + (CA)n Simple_repeat Simple_repeat 2 40 0 180 0 0 0 chr11 101027553 101027573 -49755980 + (TG)n Simple_repeat Simple_repeat 2 21 0 192 235 137 0 chr11 101027833 101027884 -49755669 - L2 LINE L2 -17 3255 3198 300 291 70 0 chr11 101027896 101027982 -49755571 - MIR SINE MIR -93 169 78 309 342 25 17 chr11 101029293 101029413 -49754140 - L2 LINE L2 -35 3237 3117 1995 184 19 3 chr11 101029498 101029857 -49753696 - MLT1A1 LTR MaLR 0 365 1 556 249 99 20 chr11 101032057 101032258 -49751295 - MIR SINE MIR -43 219 3 31 26 0 0 chr11 101032405 101032443 -49751110 + AT_rich Low_complexity Low_complexity 1 38 0 2047 285 98 40 chr11 101033964 101034331 -49749222 + L2 LINE L2 1851 2195 -1118 2004 121 3 24 chr11 101034331 101034644 -49748909 + AluSq SINE Alu 1 307 0 2047 285 98 40 chr11 101034644 101035597 -49747956 + L2 LINE L2 2195 3311 -2 265 181 14 36 chr11 101040393 101040476 -49743077 + MLT1I LTR MaLR 70 135 -274 262 194 14 42 chr11 101040682 101040754 -49742799 + MLT1G LTR MaLR 505 574 -16 27 29 0 0 chr11 101041043 101041077 -49742476 + AT_rich Low_complexity Low_complexity 1 34 0 2807 153 22 0 chr11 101041283 101041785 -49741768 + L1PA16 LINE L1 5633 6145 -21 21 0 0 0 chr11 101041793 101041814 -49741739 + AT_rich Low_complexity Low_complexity 1 21 0 1001 194 30 25 chr11 101041818 101042019 -49741534 + AluJb SINE Alu 87 288 -24 21 0 0 0 chr11 101043341 101043362 -49740191 + AT_rich Low_complexity Low_complexity 1 21 0 389 209 68 176 chr11 101043362 101043487 -49740066 - MIR SINE MIR -13 249 169 1617 126 30 0 chr11 101043487 101043757 -49739796 - L1MA4A LINE L1 -4 6299 6022 389 209 68 176 chr11 101043757 101043909 -49739644 - MIR SINE MIR -93 169 2 214 349 91 58 chr11 101044411 101044809 -49738744 + L2 LINE L2 2567 2977 -337 402 228 161 59 chr11 101044873 101045334 -49738219 + L1ME4a LINE L1 5614 6121 0 278 297 60 108 chr11 101045378 101045627 -49737926 + L2 LINE L2 3036 3272 0 1803 143 0 0 chr11 101045844 101046103 -49737450 - AluSx SINE Alu -17 295 37 2018 114 52 3 chr11 101046316 101046606 -49736947 + AluSx SINE Alu 1 304 -8 475 325 76 42 chr11 101046807 101047044 -49736509 + L2 LINE L2 3043 3287 -26 214 327 89 10 chr11 101047942 101048043 -49735510 + L2 LINE L2 3197 3305 -8 237 274 16 0 chr11 101048754 101048816 -49734737 + L2 LINE L2 3246 3308 -5 1226 217 102 3 chr11 101052008 101052330 -49731223 + L1MB1 LINE L1 5746 6099 -69 202 235 59 0 chr11 101052332 101052383 -49731170 - MIR3 SINE MIR -43 165 112 1277 253 83 104 chr11 101053211 101053433 -49730120 + L2 LINE L2 2245 2470 -843 315 0 0 0 chr11 101053433 101053468 -49730085 + (CA)n Simple_repeat Simple_repeat 2 36 0 1277 253 83 104 chr11 101053468 101054335 -49729218 + L2 LINE L2 2470 3313 0 1989 146 0 22 chr11 101054407 101054723 -49728830 + AluSx SINE Alu 1 309 -3 336 48 0 0 chr11 101055013 101055055 -49728498 + (CA)n Simple_repeat Simple_repeat 2 43 0 323 271 42 17 chr11 101055062 101055180 -49728373 - MIR SINE MIR -97 165 45 279 320 67 27 chr11 101055686 101055836 -49727717 + L2 LINE L2 2869 3024 -248 662 216 60 0 chr11 101056810 101056944 -49726609 + FAM SINE Alu 12 153 -32 551 14 0 14 chr11 101056946 101057015 -49726538 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 288 0 0 0 chr11 101057418 101057450 -49726103 + (TA)n Simple_repeat Simple_repeat 1 32 0 1486 206 2 79 chr11 101057889 101058292 -49725261 - MLT1A2 LTR MaLR -2 372 1 276 274 59 39 chr11 101059011 101059113 -49724440 - L2 LINE L2 0 3272 3169 420 206 157 0 chr11 101059693 101059795 -49723758 + MER5B DNA MER1_type 10 127 -51 437 333 87 35 chr11 101060125 101060356 -49723197 + MIR SINE MIR 14 256 -6 235 304 118 29 chr11 101061196 101061298 -49722255 + L2 LINE L2 3200 3310 -3 204 372 13 0 chr11 101062527 101062605 -49720948 - L3b LINE CR1 -295 1288 1210 279 267 106 62 chr11 101063869 101064030 -49719523 - L2 LINE L2 -2 3311 3144 761 265 182 37 chr11 101064355 101064706 -49718847 + L2 LINE L2 2912 3313 0 204 97 0 0 chr11 101065930 101065961 -49717592 + (CA)n Simple_repeat Simple_repeat 2 32 0 226 242 15 0 chr11 101068799 101068865 -49714688 + L1MD3 LINE L1 7719 7785 -210 3075 202 32 19 chr11 101069193 101069969 -49713584 + L1MC4a LINE L1 7017 7802 -6 236 303 13 0 chr11 101070268 101070344 -49713209 + MER69 DNA AcHobo 2 78 -1148 658 68 60 10 chr11 101070350 101070553 -49713000 + (TA)n Simple_repeat Simple_repeat 1 213 0 477 92 31 0 chr11 101070589 101070687 -49712866 + (TA)n Simple_repeat Simple_repeat 2 102 0 1508 180 10 44 chr11 101070689 101070984 -49712569 - AluJo SINE Alu -27 285 1 233 200 70 100 chr11 101070988 101071088 -49712465 + MER69 DNA AcHobo 2430 2526 0 183 129 0 0 chr11 101072022 101072053 -49711500 + (TG)n Simple_repeat Simple_repeat 1 31 0 315 71 0 0 chr11 101073259 101073301 -49710252 + (CA)n Simple_repeat Simple_repeat 2 43 0 520 187 0 0 chr11 101074409 101074516 -49709037 - L1PB4 LINE L1 -1 6155 6049 264 235 0 0 chr11 101074521 101074589 -49708964 + (TA)n Simple_repeat Simple_repeat 1 68 0 522 217 44 84 chr11 101074592 101074818 -49708735 - MER89-int LTR ERV1 -2469 4332 4116 29 28 0 0 chr11 101074820 101074856 -49708697 + AT_rich Low_complexity Low_complexity 1 36 0 250 179 0 0 chr11 101074899 101074955 -49708598 - L1MC4 LINE L1 -1339 6703 6648 198 312 11 32 chr11 101076014 101076107 -49707446 - MER5B DNA MER1_type 0 178 88 180 0 0 0 chr11 101076802 101076822 -49706731 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2135 104 0 0 chr11 101077430 101077739 -49705814 - AluSg SINE Alu 0 309 1 339 164 0 0 chr11 101079329 101079390 -49704163 + (TA)n Simple_repeat Simple_repeat 1 61 0 387 0 0 0 chr11 101079390 101079433 -49704120 + (GA)n Simple_repeat Simple_repeat 2 44 0 1656 171 8 0 chr11 101079433 101079696 -49703857 - AluJb SINE Alu -44 268 4 27 0 0 0 chr11 101079704 101079731 -49703822 + AT_rich Low_complexity Low_complexity 1 27 0 186 118 0 0 chr11 101081003 101081037 -49702516 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 180 235 157 0 chr11 101082859 101082910 -49700643 - L2 LINE L2 -72 3241 3183 186 43 0 0 chr11 101082952 101082975 -49700578 + (CAA)n Simple_repeat Simple_repeat 2 24 0 421 193 79 14 chr11 101083794 101083934 -49699619 + MER103 DNA DNA 3 151 -15 514 104 39 0 chr11 101084015 101084092 -49699461 - MADE1 DNA Mariner 0 80 1 2181 112 7 14 chr11 101084463 101084758 -49698795 + AluSx SINE Alu 1 293 -19 2490 50 0 3 chr11 101085032 101085329 -49698224 + AluY SINE Alu 1 296 -15 11582 144 48 39 chr11 101085996 101087141 -49696412 - Tigger1 DNA MER2_type 0 2418 1285 1656 194 3 17 chr11 101087141 101087429 -49696124 - AluJo SINE Alu -27 285 2 11582 144 48 39 chr11 101087429 101088680 -49694873 - Tigger1 DNA MER2_type -1133 1285 1 2109 124 3 0 chr11 101089516 101089807 -49693746 - AluSc SINE Alu -17 292 1 433 246 39 46 chr11 101089986 101090116 -49693437 + MIR SINE MIR 63 191 -71 23 0 0 0 chr11 101090946 101090969 -49692584 + AT_rich Low_complexity Low_complexity 1 23 0 195 287 191 28 chr11 101092366 101092505 -49691048 - MIR SINE MIR -64 144 8 2219 160 16 0 chr11 101093057 101093431 -49690122 + MSTB1 LTR MaLR 20 399 -33 434 284 64 23 chr11 101093534 101093752 -49689801 - L1M4 LINE L1 -806 5340 5114 4459 113 65 65 chr11 101094689 101095589 -49687964 - pTR5 LTR ERV1 0 2606 1524 592 163 0 47 chr11 101095705 101095834 -49687719 - pTR5 LTR ERV1 -1578 860 738 433 267 58 23 chr11 101096111 101096283 -49687270 + MIR SINE MIR 24 201 -61 201 344 0 0 chr11 101097970 101098031 -49685522 + MIR SINE MIR 87 147 -61 183 287 172 11 chr11 101098115 101098202 -49685351 - MIR SINE MIR -92 116 16 351 0 0 0 chr11 101098538 101098577 -49684976 + (TG)n Simple_repeat Simple_repeat 1 39 0 500 349 40 20 chr11 101099917 101100023 -49683530 + MIR SINE MIR 6 108 -154 1185 81 139 0 chr11 101100023 101100050 -49683503 - MER107 DNA MER1_type 0 197 175 182 36 0 36 chr11 101100050 101100078 -49683475 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1185 81 139 0 chr11 101100078 101100222 -49683331 - MER107 DNA MER1_type -22 175 2 500 349 40 20 chr11 101100222 101100364 -49683189 + MIR SINE MIR 108 259 -3 1875 153 7 0 chr11 101101667 101101955 -49681598 + AluJb SINE Alu 1 290 -22 24 32 0 0 chr11 101102006 101102037 -49681516 + AT_rich Low_complexity Low_complexity 1 31 0 471 121 30 20 chr11 101103173 101103272 -49680281 - L1MB2 LINE L1 -2 6169 6070 2286 110 3 0 chr11 101104993 101105301 -49678252 - AluSq SINE Alu -3 310 2 935 178 58 0 chr11 101106701 101106892 -49676661 - MER20 DNA MER1_type -1 218 17 306 300 96 92 chr11 101106956 101107403 -49676150 - L2 LINE L2 -5 3267 2819 2492 63 3 0 chr11 101107403 101107705 -49675848 + AluY SINE Alu 1 303 -8 189 0 0 0 chr11 101107872 101107893 -49675660 + (A)n Simple_repeat Simple_repeat 1 21 0 3809 166 26 21 chr11 101111910 101112631 -49670922 + MER44D DNA MER2_type 3 599 -6 317 194 28 0 chr11 101112727 101112799 -49670754 - MER103 DNA DNA -73 93 20 689 234 63 0 chr11 101113184 101113359 -49670194 + MER5A DNA MER1_type 1 186 -3 471 309 44 6 chr11 101113504 101113685 -49669868 + MIR3 SINE MIR 15 202 -6 416 287 207 23 chr11 101114367 101114541 -49669012 - MIR SINE MIR -10 252 47 894 233 108 13 chr11 101114728 101114960 -49668593 - MIR SINE MIR -1 261 8 422 272 70 0 chr11 101116461 101116575 -49666978 + MIR3 SINE MIR 87 208 0 227 333 0 0 chr11 101116672 101116744 -49666809 - L2 LINE L2 -9 3263 3192 483 261 90 77 chr11 101118324 101118546 -49665007 + MIR SINE MIR 6 230 -32 412 274 138 31 chr11 101119229 101119612 -49663941 - L1ME4a LINE L1 -178 5943 5520 23 54 0 0 chr11 101123753 101123790 -49659763 + AT_rich Low_complexity Low_complexity 1 37 0 1487 233 42 11 chr11 101124162 101124522 -49659031 - MLT1A2 LTR MaLR -3 371 1 378 275 84 7 chr11 101124920 101125062 -49658491 - MIR SINE MIR -2 260 108 23 33 0 0 chr11 101125615 101125645 -49657908 + AT_rich Low_complexity Low_complexity 1 30 0 1583 183 16 47 chr11 101125645 101125967 -49657586 + AluJb SINE Alu 1 312 0 240 291 29 39 chr11 101126062 101126165 -49657388 - MIR3 SINE MIR -93 115 14 511 233 19 31 chr11 101126759 101126905 -49656648 - MER5A DNA MER1_type -1 188 30 5556 11 0 0 chr11 101127238 101127864 -49655689 - L1PA2 LINE L1 -1 6154 5529 1358 18 0 0 chr11 101127864 101128032 -49655521 + L1P LINE L1 4239 4406 -1740 303 267 273 37 chr11 101128504 101128691 -49654862 - MIR SINE MIR -12 250 20 429 263 91 50 chr11 101128866 101129064 -49654489 - MLT1I LTR MaLR -109 300 95 1352 211 40 54 chr11 101129095 101129465 -49654088 + MLT1A1 LTR MaLR 1 365 0 236 291 0 0 chr11 101129566 101129621 -49653932 - L2 LINE L2 -17 3255 3201 186 324 81 36 chr11 101129707 101129818 -49653735 - MIR SINE MIR -10 252 137 234 242 161 0 chr11 101130118 101130242 -49653311 + LTR33 LTR ERVL 1 144 -377 692 185 12 58 chr11 101130334 101130507 -49653046 + LTR33 LTR ERVL 355 519 -2 21 89 0 0 chr11 101130507 101130563 -49652990 + AT_rich Low_complexity Low_complexity 1 56 0 1734 179 0 32 chr11 101132736 101133048 -49650505 + AluJo SINE Alu 1 302 -10 216 278 10 62 chr11 101133169 101133266 -49650287 + CT-rich Low_complexity Low_complexity 1 92 0 1323 211 57 33 chr11 101135072 101135191 -49648362 + AluJo SINE Alu 1 116 -196 239 70 0 23 chr11 101135191 101135234 -49648319 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1323 211 57 33 chr11 101135234 101135413 -49648140 + AluJo SINE Alu 116 306 -6 1622 218 67 10 chr11 101135653 101136134 -49647419 - MER69 DNA AcHobo 0 2526 2019 1113 290 60 21 chr11 101136137 101136572 -49646981 - MER69 DNA AcHobo -1725 801 350 309 239 49 9 chr11 101136594 101136710 -49646843 - L1MC4 LINE L1 -1339 6983 1987 753 257 181 0 chr11 101136740 101137028 -49646525 - MER69 DNA AcHobo -2186 340 1 1969 108 4 0 chr11 101137368 101137628 -49645925 + AluSc SINE Alu 43 303 -6 518 303 101 0 chr11 101138914 101139132 -49644421 - MIR SINE MIR -7 255 16 1920 137 11 4 chr11 101139195 101139472 -49644081 + AluSx SINE Alu 1 279 -33 2445 68 0 0 chr11 101140423 101140718 -49642835 - AluY SINE Alu -16 295 1 633 323 53 9 chr11 101140959 101141185 -49642368 - MIR SINE MIR -8 254 19 201 300 17 17 chr11 101141403 101141463 -49642090 - L2 LINE L2 -47 3266 3207 1368 202 139 63 chr11 101141470 101141519 -49642034 - MLT2B2 LTR ERVL 0 515 471 450 0 0 0 chr11 101141519 101141569 -49641984 + (CA)n Simple_repeat Simple_repeat 1 50 0 1368 202 139 63 chr11 101141569 101141778 -49641775 - MLT2B2 LTR ERVL -44 471 279 315 49 0 0 chr11 101141778 101141819 -49641734 + (GA)n Simple_repeat Simple_repeat 2 42 0 1368 202 139 63 chr11 101141819 101142034 -49641519 - MLT2B2 LTR ERVL -236 279 5 1587 160 0 59 chr11 101142894 101143201 -49640352 - AluJo SINE Alu -23 289 1 282 327 53 35 chr11 101145432 101145545 -49638008 + L2 LINE L2 3153 3267 -5 1938 194 6 6 chr11 101146435 101146800 -49636753 - MLT1A1 LTR MaLR 0 365 1 342 0 0 0 chr11 101147833 101147871 -49635682 + (TG)n Simple_repeat Simple_repeat 2 39 0 975 187 24 0 chr11 101148623 101148832 -49634721 - L1MB5 LINE L1 -8 6166 5953 1862 141 4 14 chr11 101148986 101149263 -49634290 + AluSq SINE Alu 1 274 -39 21 71 0 0 chr11 101149440 101149482 -49634071 + AT_rich Low_complexity Low_complexity 1 42 0 293 241 28 83 chr11 101150537 101150581 -49632972 - MER5A DNA MER1_type -87 102 57 3895 107 7 0 chr11 101150581 101151133 -49632420 - L1PA11 LINE L1 0 6174 5619 293 241 28 83 chr11 101151133 101151196 -49632357 - MER5A DNA MER1_type -132 57 1 * 1128 314 53 3 chr11 101151196 101151566 -49631987 - L3 LINE CR1 -801 776 388 215 329 0 0 chr11 101151584 101151657 -49631896 + GA-rich Low_complexity Low_complexity 4 76 0 2082 146 0 0 chr11 101153125 101153426 -49630127 - AluSx SINE Alu -11 301 1 1673 128 40 8 chr11 101153623 101153872 -49629681 + AluJb SINE Alu 1 257 -55 411 295 89 0 chr11 101153995 101154107 -49629446 + MIR SINE MIR 45 166 -96 219 265 0 0 chr11 101154333 101154382 -49629171 + L2 LINE L2 3265 3313 0 450 0 0 0 chr11 101154822 101154872 -49628681 + (TG)n Simple_repeat Simple_repeat 2 51 0 311 304 10 10 chr11 101156851 101156953 -49626600 - MIR SINE MIR -72 190 89 675 137 40 8 chr11 101156953 101157077 -49626476 - MLT1A2 LTR MaLR 0 374 247 293 276 198 32 chr11 101157367 101157584 -49625969 - MIR SINE MIR 0 262 10 279 170 0 0 chr11 101160600 101160647 -49622906 + L2 LINE L2 3226 3272 0 247 354 54 15 chr11 101161738 101161868 -49621685 + L2 LINE L2 3138 3272 0 1243 192 123 11 chr11 101161955 101162216 -49621337 + AluJb SINE Alu 9 298 -14 343 313 10 0 chr11 101162307 101162403 -49621150 + MIR SINE MIR 44 140 -122 21 36 0 0 chr11 101162439 101162467 -49621086 + AT_rich Low_complexity Low_complexity 1 28 0 477 190 116 8 chr11 101162679 101162800 -49620753 + L2 LINE L2 3180 3313 0 2195 115 0 0 chr11 101163343 101163638 -49619915 - AluSx SINE Alu -17 295 1 2044 150 0 3 chr11 101164460 101164767 -49618786 - AluSq SINE Alu -7 306 1 23 0 0 0 chr11 101164960 101164983 -49618570 + AT_rich Low_complexity Low_complexity 1 23 0 278 192 0 64 chr11 101165610 101165688 -49617865 + MER112 DNA MER1_type 11 83 -177 1469 189 40 98 chr11 101165708 101165993 -49617560 - MLT1C LTR MaLR -14 453 206 2191 112 0 0 chr11 101165993 101166279 -49617274 + AluSx SINE Alu 17 302 -10 1469 189 40 98 chr11 101166279 101166474 -49617079 - MLT1C LTR MaLR -261 206 1 195 162 0 0 chr11 101166503 101166540 -49617013 + (CTATT)n Simple_repeat Simple_repeat 4 40 0 194 290 159 0 chr11 101166634 101166703 -49616850 + MIR SINE MIR 108 187 -75 24 0 0 0 chr11 101167252 101167276 -49616277 + AT_rich Low_complexity Low_complexity 1 24 0 228 292 17 8 chr11 101168625 101168745 -49614808 + L1M4 LINE L1 3341 3461 -2685 234 244 57 41 chr11 101168746 101168869 -49614684 + L1MCa LINE L1 140 264 -6300 * 643 306 52 26 chr11 101168864 101169174 -49614379 + L1MCa LINE L1 166 483 -5562 1871 226 42 56 chr11 101169326 101170205 -49613348 + L1MCa LINE L1 570 1441 -5032 1848 173 3 10 chr11 101170205 101170517 -49613036 + AluJb SINE Alu 3 312 0 1871 226 42 56 chr11 101170517 101170698 -49612855 + L1MCa LINE L1 1441 1623 -4850 1927 153 10 0 chr11 101171510 101171818 -49611735 + AluY SINE Alu 1 311 0 251 366 118 7 chr11 101171909 101172062 -49611491 - L2 LINE L2 -1 3271 3102 2670 183 42 12 chr11 101172384 101172887 -49610666 + MLT2B1 LTR ERVL 3 520 0 1736 167 21 3 chr11 101173246 101173528 -49610025 + AluJo SINE Alu 17 303 -9 239 220 0 121 chr11 101175125 101175216 -49608337 + L2 LINE L2 3234 3313 0 373 313 66 28 chr11 101175708 101175740 -49607813 + MIR SINE MIR 3 32 -230 1172 188 35 86 chr11 101175740 101176134 -49607419 - MLT1A2 LTR MaLR 0 374 1 373 313 66 28 chr11 101176134 101176340 -49607213 + MIR SINE MIR 32 250 -12 281 26 0 26 chr11 101177000 101177039 -49606514 + (TG)n Simple_repeat Simple_repeat 2 39 0 258 81 0 0 chr11 101178041 101178078 -49605475 + (TG)n Simple_repeat Simple_repeat 1 37 0 183 100 0 0 chr11 101178083 101178113 -49605440 + (GA)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr11 101178796 101178821 -49604732 + AT_rich Low_complexity Low_complexity 1 25 0 1900 117 25 23 chr11 101179524 101179857 -49603696 + THE1C LTR MaLR 1 375 0 712 214 69 103 chr11 101180180 101180530 -49603023 + MER46C DNA MER2_type 1 338 0 6762 23 6 0 chr11 101181030 101181825 -49601728 + L1PA3 LINE L1 5355 6154 -1 511 233 19 31 chr11 101182160 101182306 -49601247 + MER5A DNA MER1_type 30 188 -1 240 291 29 39 chr11 101182900 101183003 -49600550 + MIR3 SINE MIR 14 115 -93 1555 186 16 47 chr11 101183098 101183420 -49600133 - AluJb SINE Alu 0 312 1 23 33 0 0 chr11 101183420 101183450 -49600103 + AT_rich Low_complexity Low_complexity 1 30 0 378 275 84 7 chr11 101184003 101184145 -49599408 + MIR SINE MIR 108 260 -2 1487 233 42 11 chr11 101184543 101184903 -49598650 + MLT1A2 LTR MaLR 1 371 -3 23 54 0 0 chr11 101185275 101185312 -49598241 + AT_rich Low_complexity Low_complexity 1 37 0 216 67 0 0 chr11 101186298 101186328 -49597225 + (A)n Simple_repeat Simple_repeat 1 30 0 2315 78 7 0 chr11 101187147 101187442 -49596111 - AluY SINE Alu -14 297 1 213 261 216 9 chr11 101188785 101188896 -49594657 - MIR SINE MIR 0 262 129 1257 174 36 1 chr11 101188966 101189238 -49594315 + L1MC1 LINE L1 5886 6108 -58 252 0 0 0 chr11 101189376 101189404 -49594149 + (T)n Simple_repeat Simple_repeat 1 28 0 203 270 101 22 chr11 101190647 101190736 -49592817 - MIR3 SINE MIR -16 192 97 616 245 64 72 chr11 101190738 101190987 -49592566 - MIR SINE MIR -15 247 1 338 235 15 0 chr11 101191066 101191134 -49592419 - MER5A DNA MER1_type -1 188 120 2015 234 70 8 chr11 101191134 101191659 -49591894 + MLT1E LTR MaLR 1 558 -35 21 0 0 0 chr11 101191689 101191710 -49591843 + GC_rich Low_complexity Low_complexity 1 21 0 462 239 62 18 chr11 101191710 101191823 -49591730 - MER5A DNA MER1_type -68 121 4 655 260 32 0 chr11 101192030 101192184 -49591369 + MIR SINE MIR 10 168 -94 206 265 167 10 chr11 101192212 101192314 -49591239 + MIR SINE MIR 136 253 -9 379 360 0 62 chr11 101192396 101192557 -49590996 + L2 LINE L2 3122 3272 0 219 69 0 0 chr11 101193118 101193147 -49590406 + (T)n Simple_repeat Simple_repeat 1 29 0 185 299 78 0 chr11 101193617 101193694 -49589859 + MIR SINE MIR 48 130 -132 197 62 0 31 chr11 101193780 101193812 -49589741 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 247 266 211 9 chr11 101194074 101194183 -49589370 - MIR SINE MIR -48 214 84 730 205 40 67 chr11 101194455 101194679 -49588874 + MER20 DNA MER1_type 2 219 0 393 349 35 26 chr11 101194679 101194908 -49588645 - L2 LINE L2 -212 3060 2830 600 14 0 0 chr11 101195485 101195554 -49587999 + (TCCA)n Simple_repeat Simple_repeat 4 72 0 534 278 61 38 chr11 101195568 101195780 -49587773 + MIR SINE MIR 46 262 0 294 228 447 0 chr11 101195978 101196101 -49587452 + MIR SINE MIR 79 256 -6 226 298 115 29 chr11 101197165 101197269 -49586284 + MIR SINE MIR 3 115 -147 269 170 0 0 chr11 101197304 101197351 -49586202 - THE1C LTR MaLR 0 428 382 * 940 118 83 44 chr11 101197349 101197553 -49586000 - THE1C LTR MaLR -163 212 1 342 343 89 21 chr11 101197751 101197987 -49585566 - MIR SINE MIR -4 258 7 423 231 71 52 chr11 101198425 101198600 -49584953 - MIR SINE MIR -70 192 20 225 182 91 0 chr11 101199498 101199542 -49584011 + L2 LINE L2 3221 3268 -4 495 299 46 11 chr11 101200690 101200864 -49582689 - MIR SINE MIR -51 211 32 236 287 25 66 chr11 101201179 101201301 -49582252 - L2 LINE L2 -5 3267 3151 337 267 86 48 chr11 101202309 101202414 -49581139 - L2 LINE L2 -2 3270 3162 444 37 0 0 chr11 101202945 101202999 -49580554 + (TG)n Simple_repeat Simple_repeat 1 54 0 258 284 25 25 chr11 101203306 101203387 -49580166 + L2 LINE L2 3228 3308 -5 189 0 0 0 chr11 101203523 101203544 -49580009 + (TTTAA)n Simple_repeat Simple_repeat 3 23 0 906 312 133 33 chr11 101205280 101205970 -49577583 + L3 LINE CR1 680 1438 -139 311 311 57 0 chr11 101206098 101206204 -49577349 + MIR SINE MIR 49 160 -102 311 210 0 0 chr11 101206571 101206633 -49576920 - MIR SINE MIR -1 261 200 233 307 129 36 chr11 101206700 101206840 -49576713 - MIR3 SINE MIR -30 178 26 22 0 0 0 chr11 101207020 101207042 -49576511 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr11 101208916 101208937 -49574616 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 414 202 23 93 chr11 101209058 101209187 -49574366 - L2 LINE L2 0 3272 3153 195 129 0 0 chr11 101210176 101210207 -49573346 + (TTCTC)n Simple_repeat Simple_repeat 1 31 0 305 127 9 191 chr11 101210740 101210850 -49572703 - L1MC4 LINE L1 -1339 6703 6614 439 217 17 34 chr11 101210887 101211062 -49572491 + (CATATA)n Simple_repeat Simple_repeat 2 173 0 597 229 114 38 chr11 101212494 101212756 -49570797 + L1ME LINE L1 5531 5812 -309 290 238 109 40 chr11 101212756 101212857 -49570696 - L2 LINE L2 -17 3296 3189 241 118 0 0 chr11 101212968 101213002 -49570551 - MADE1 DNA Mariner -39 41 8 203 170 21 0 chr11 101213234 101213281 -49570272 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 376 339 101 0 chr11 101213294 101213462 -49570091 - L3b LINE CR1 -138 1445 1261 1266 128 32 9 chr11 101215477 101215736 -49567817 - LTR54 LTR ERV1 0 510 185 328 277 248 0 chr11 101216048 101216185 -49567368 + MER5A DNA MER1_type 1 171 -18 751 323 53 18 chr11 101216274 101216611 -49566942 - L3b LINE CR1 -127 1456 1108 29 0 0 25 chr11 101216703 101216722 -49566831 + AT_rich Low_complexity Low_complexity 1 19 -20 2207 109 0 0 chr11 101216722 101217007 -49566546 - AluSc SINE Alu -24 285 1 29 0 0 25 chr11 101217007 101217027 -49566526 + AT_rich Low_complexity Low_complexity 19 39 0 2647 7 7 0 chr11 101217137 101217429 -49566124 + AluY SINE Alu 4 297 -14 411 235 20 10 chr11 101217834 101217936 -49565617 + L1MD3 LINE L1 7883 7985 -10 558 274 163 49 chr11 101218963 101219350 -49564203 + L3 LINE CR1 1131 1561 -16 230 167 0 0 chr11 101219409 101219445 -49564108 - L2 LINE L2 -13 3300 3265 381 313 69 6 chr11 101219837 101219997 -49563556 + MIR SINE MIR 1 170 -92 200 151 57 94 chr11 101219978 101220031 -49563522 + L2 LINE L2 3261 3311 -2 * 4172 219 64 36 chr11 101220142 101220216 -49563337 + L1ME1 LINE L1 4192 4262 -1904 13772 90 8 47 chr11 101220216 101222965 -49560588 + L1PA7 LINE L1 3426 6154 0 4172 219 64 36 chr11 101222965 101224796 -49558757 + L1ME1 LINE L1 4262 6165 -1 182 326 90 0 chr11 101225788 101225877 -49557676 - MIR SINE MIR -10 252 156 243 261 185 0 chr11 101225981 101226073 -49557480 + MIR SINE MIR 63 171 -91 195 360 90 0 chr11 101226251 101226340 -49557213 + L2 LINE L2 3134 3230 -42 3706 169 31 6 chr11 101226707 101227357 -49556196 + LTR51 LTR ERV1 6 671 0 225 145 0 56 chr11 101231390 101231444 -49552109 - L2 LINE L2 -218 3054 3008 247 213 0 4 chr11 101231528 101231583 -49551970 + MIR SINE MIR 62 115 -93 237 297 59 34 chr11 101231694 101231812 -49551741 + MIR SINE MIR 70 190 -72 312 83 0 0 chr11 101232103 101232151 -49551402 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 2273 48 4 0 chr11 101232701 101232970 -49550583 - AluY SINE Alu -41 270 1 182 0 105 0 chr11 101233812 101233850 -49549703 + T-rich Low_complexity Low_complexity 2 43 0 293 238 0 16 chr11 101234537 101234600 -49548953 - MER5A DNA MER1_type -97 92 31 901 233 33 14 chr11 101236091 101236306 -49547247 - MER20 DNA MER1_type 0 219 1 189 107 0 0 chr11 101236431 101236459 -49547094 + (TATATG)n Simple_repeat Simple_repeat 5 32 0 23 0 0 0 chr11 101236462 101236485 -49547068 + AT_rich Low_complexity Low_complexity 1 23 0 1137 195 116 8 chr11 101236488 101236739 -49546814 + MER39 LTR ERV1 371 648 -59 1478 195 43 7 chr11 101237327 101237609 -49545944 - AluJo SINE Alu -10 292 1 202 240 20 0 chr11 101238604 101238654 -49544899 - MIR SINE MIR -102 106 56 707 207 60 28 chr11 101238796 101239013 -49544540 + MLT1C LTR MaLR 1 224 -243 * 1445 236 56 24 chr11 101239008 101239491 -49544062 - MER39 LTR ERV1 -7 700 1 929 225 64 17 chr11 101239519 101239755 -49543798 + MLT1C LTR MaLR 219 465 -2 597 314 80 8 chr11 101240651 101240890 -49542663 + MIR SINE MIR 6 261 -1 333 298 58 33 chr11 101241193 101241314 -49542239 + MIR3 SINE MIR 32 155 -53 431 325 85 15 chr11 101242608 101242808 -49540745 + MIR SINE MIR 48 261 -1 343 305 32 0 chr11 101242920 101243015 -49540538 - L2 LINE L2 -25 3247 3150 921 208 29 0 chr11 101244161 101244334 -49539219 + MER45A DNA AcHobo 1 178 0 360 0 0 0 chr11 101245029 101245069 -49538484 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 309 267 11 67 chr11 101245389 101245479 -49538074 - L2 LINE L2 0 3272 3188 210 71 0 0 chr11 101245550 101245578 -49537975 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 5997 153 16 11 chr11 101246316 101247757 -49535796 + L1MA6 LINE L1 4835 6290 -10 306 305 12 0 chr11 101248070 101248152 -49535401 - L2 LINE L2 -4 3309 3227 1218 190 41 0 chr11 101248517 101248786 -49534767 + L1MA4 LINE L1 6013 6292 -8 1110 289 78 23 chr11 101249294 101249771 -49533782 + L2 LINE L2 2811 3313 0 386 253 84 59 chr11 101251480 101251682 -49531871 - Charlie8 DNA MER1_type -2184 233 27 * 1180 249 122 67 chr11 101251680 101252246 -49531307 - MER115 DNA AcHobo -9 684 88 257 328 72 32 chr11 101252412 101252537 -49531016 + MIR SINE MIR 20 149 -113 268 303 62 96 chr11 101253925 101254103 -49529450 - MIR SINE MIR -71 191 20 509 265 43 38 chr11 101254159 101254344 -49529209 - MIR SINE MIR -51 211 26 23 0 0 0 chr11 101255056 101255079 -49528474 + AT_rich Low_complexity Low_complexity 1 23 0 405 0 0 0 chr11 101255708 101255753 -49527800 + (TG)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chr11 101256111 101256131 -49527422 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 1193 119 11 0 chr11 101257111 101257288 -49526265 + AluSg/x SINE Alu 134 312 0 216 204 21 54 chr11 101257294 101257387 -49526166 + GA-rich Low_complexity Low_complexity 1 90 0 565 153 25 0 chr11 101257986 101258104 -49525449 + CT-rich Low_complexity Low_complexity 2 122 0 2237 131 0 0 chr11 101258104 101258416 -49525137 - AluSq SINE Alu -1 312 1 2340 93 0 0 chr11 101258491 101258802 -49524751 + AluY SINE Alu 1 311 0 251 277 122 70 chr11 101259719 101259990 -49523563 - L2 LINE L2 -8 3305 3021 272 238 167 48 chr11 101260368 101260536 -49523017 + MIR3 SINE MIR 8 195 -13 22 35 0 0 chr11 101260732 101260761 -49522792 + AT_rich Low_complexity Low_complexity 1 29 0 673 189 244 0 chr11 101262435 101262615 -49520938 + MER58A DNA MER1_type 1 224 0 211 360 34 34 chr11 101264278 101264425 -49519128 - MIR3 SINE MIR -59 149 3 336 276 57 0 chr11 101265858 101265981 -49517572 + MER94 DNA DNA 1 130 -4 181 291 36 18 chr11 101266007 101266062 -49517491 + L2 LINE L2 1425 1480 -1834 1587 199 60 0 chr11 101266074 101266405 -49517148 - MLT2C1 LTR ERVL -44 353 3 287 24 71 0 chr11 101266447 101266489 -49517064 + T-rich Low_complexity Low_complexity 2 46 0 332 265 121 69 chr11 101267153 101267575 -49515978 - L1ME4a LINE L1 -1 6120 5677 28367 119 18 54 chr11 101267778 101272900 -49510653 - L1PA7 LINE L1 -1 6153 1310 9568 28 17 0 chr11 101272900 101274821 -49508732 - L1PA4 LINE L1 -1 6154 4213 28367 119 18 54 chr11 101274821 101276076 -49507477 - L1PA7 LINE L1 -4844 1310 12 2242 104 0 23 chr11 101276117 101276426 -49507127 + AluY SINE Alu 1 302 -9 470 280 75 16 chr11 101277022 101277208 -49506345 + MIR SINE MIR 66 262 0 1970 176 98 9 chr11 101277287 101277707 -49505846 - LTR32 LTR ERVL 0 471 15 592 47 12 12 chr11 101277858 101277943 -49505610 + (TTCC)n Simple_repeat Simple_repeat 3 87 0 2005 154 3 6 chr11 101277945 101278256 -49505297 - AluSx SINE Alu -2 310 1 1678 163 0 78 chr11 101278499 101278831 -49504722 - AluJb SINE Alu -6 306 1 234 323 84 65 chr11 101279635 101279790 -49503763 - MIR3 SINE MIR -14 194 37 * 501 258 106 25 chr11 101279762 101279960 -49503593 + MIR SINE MIR 48 261 -1 203 162 0 0 chr11 101280281 101280318 -49503235 + (CAGAGA)n Simple_repeat Simple_repeat 3 39 0 347 296 139 35 chr11 101280573 101280815 -49502738 + L1ME4a LINE L1 5769 6053 -68 692 160 0 0 chr11 101280815 101280940 -49502613 - L1MB4 LINE L1 -1 6179 6055 347 296 139 35 chr11 101280940 101281014 -49502539 + L1ME4a LINE L1 6053 6118 -3 283 299 93 19 chr11 101281851 101281958 -49501595 - L2 LINE L2 -9 3263 3149 1848 157 19 19 chr11 101282023 101282335 -49501218 + AluJo SINE Alu 1 312 0 1030 242 83 19 chr11 101282557 101282920 -49500633 - LTR16C LTR ERVL -1 490 105 299 336 34 8 chr11 101283206 101283325 -49500228 + MIR SINE MIR 8 129 -133 227 29 57 0 chr11 101284032 101284067 -49499486 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 188 35 35 0 chr11 101284461 101284490 -49499063 + (TA)n Simple_repeat Simple_repeat 2 31 0 225 0 0 0 chr11 101284490 101284515 -49499038 + (T)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr11 101284535 101284559 -49498994 + GC_rich Low_complexity Low_complexity 1 24 0 2444 90 0 0 chr11 101285125 101285435 -49498118 - AluY SINE Alu -1 310 1 234 105 0 0 chr11 101285485 101285523 -49498030 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 291 247 65 0 chr11 101285844 101285921 -49497632 + MIR SINE MIR 68 149 -113 243 121 0 61 chr11 101286813 101286879 -49496674 + (GGA)n Simple_repeat Simple_repeat 3 64 0 815 151 68 21 chr11 101287953 101288241 -49495312 + MLT1B LTR MaLR 37 390 0 505 303 29 11 chr11 101288260 101288435 -49495118 + MER5B DNA MER1_type 1 178 0 228 227 188 62 chr11 101289304 101289432 -49494121 - MIR SINE MIR -108 154 11 501 182 0 0 chr11 101290176 101290275 -49493278 + (TG)n Simple_repeat Simple_repeat 2 100 0 410 340 73 29 chr11 101290275 101290481 -49493072 + MIR SINE MIR 9 223 -39 746 278 41 13 chr11 101291010 101291262 -49492291 + MIR SINE MIR 1 261 -1 215 256 182 41 chr11 101292042 101292163 -49491390 - MIR SINE MIR -6 256 119 327 287 11 0 chr11 101292632 101292719 -49490834 - MIR SINE MIR -127 135 48 1885 159 0 35 chr11 101295780 101296094 -49487459 - AluJb SINE Alu -9 303 1 282 252 56 14 chr11 101296548 101296691 -49486862 - MER103 DNA DNA -8 158 10 267 152 0 0 chr11 101296879 101296925 -49486628 - MER33 DNA MER1_type 0 324 279 1031 204 80 4 chr11 101296996 101297271 -49486282 - MER33 DNA MER1_type -28 296 1 318 298 171 6 chr11 101297841 101297999 -49485554 - MIR SINE MIR 0 262 79 375 248 116 31 chr11 101298671 101298800 -49484753 + MIR SINE MIR 13 152 -110 656 284 99 5 chr11 101299098 101299309 -49484244 + MIR SINE MIR 32 262 0 312 283 148 13 chr11 101299518 101299836 -49483717 - L1ME4a LINE L1 0 6121 5761 2181 119 3 3 chr11 101300660 101300971 -49482582 + AluSx SINE Alu 1 311 -1 201 230 40 95 chr11 101302430 101302556 -49480997 + MIR SINE MIR 73 191 -71 771 193 32 11 chr11 101304017 101304204 -49479349 - MER96B DNA MER1_type? -185 232 42 207 308 174 22 chr11 101304551 101304775 -49478778 - L2 LINE L2 -210 3062 2805 2110 116 0 3 chr11 101305180 101305490 -49478063 - L1PA15 LINE L1 -1 6164 5856 784 290 7 34 chr11 101306346 101306615 -49476938 + MIR SINE MIR 1 262 0 374 329 40 20 chr11 101306619 101306771 -49476782 - MER5A DNA MER1_type -23 166 12 332 317 61 48 chr11 101306801 101307031 -49476522 + MIR SINE MIR 16 248 -14 285 245 138 21 chr11 101307148 101307242 -49476311 - L3 LINE CR1 -3 1574 1470 426 299 42 65 chr11 101307289 101307506 -49476047 - L3 LINE CR1 -224 1353 1142 1632 25 5 0 chr11 101308397 101308599 -49474954 - L1P2 LINE L1 -573 5581 5379 2093 65 47 0 chr11 101308599 101308877 -49474676 + L1PA6 LINE L1 5860 6150 -4 306 288 76 17 chr11 101309019 101309137 -49474416 - MIR SINE MIR -50 212 88 29 0 0 0 chr11 101309574 101309603 -49473950 + AT_rich Low_complexity Low_complexity 1 29 0 6459 25 6 0 chr11 101309603 101310396 -49473157 - L1PA3 LINE L1 -3 6152 5355 712 214 69 103 chr11 101310896 101311246 -49472307 - MER46C DNA MER2_type 0 338 1 1900 117 25 23 chr11 101311569 101311902 -49471651 - THE1C LTR MaLR 0 375 1 2277 102 0 7 chr11 101312539 101312833 -49470720 - AluSg SINE Alu -18 292 1 371 294 52 33 chr11 101314002 101314332 -49469221 - L1ME4a LINE L1 -224 5897 5562 589 270 114 12 chr11 101314356 101314906 -49468647 + L1MC4 LINE L1 5265 5572 -598 279 0 0 0 chr11 101314934 101314965 -49468588 + (TA)n Simple_repeat Simple_repeat 2 32 0 454 350 71 44 chr11 101315865 101316299 -49467254 + L2 LINE L2 2827 3272 0 211 434 18 5 chr11 101316429 101316648 -49466905 - L3 LINE CR1 -775 802 581 195 305 64 85 chr11 101317486 101317768 -49465785 - L2 LINE L2 -37 3235 2960 22 0 0 0 chr11 101318838 101318860 -49464693 + AT_rich Low_complexity Low_complexity 1 22 0 240 100 0 0 chr11 101319066 101319106 -49464447 + (TG)n Simple_repeat Simple_repeat 2 41 0 300 289 30 44 chr11 101320635 101320770 -49462783 + L2 LINE L2 3136 3268 -4 195 362 67 36 chr11 101321219 101321443 -49462110 + L2 LINE L2 2351 2581 -733 1973 116 27 24 chr11 101321633 101321927 -49461626 - AluSx SINE Alu -17 295 1 434 110 27 0 chr11 101321929 101322002 -49461551 + CT-rich Low_complexity Low_complexity 3 77 0 1611 182 3 31 chr11 101322002 101322321 -49461232 - AluJb SINE Alu 0 312 3 2526 222 30 0 chr11 101322488 101322989 -49460564 + LTR53 LTR ERVL 4 519 0 2325 71 0 0 chr11 101322996 101323300 -49460253 + AluY SINE Alu 1 304 0 24 32 0 0 chr11 101324262 101324293 -49459260 + AT_rich Low_complexity Low_complexity 1 31 0 367 284 119 41 chr11 101325035 101325278 -49458275 - L1MC4a LINE L1 -1867 5941 5680 484 286 38 63 chr11 101325355 101325605 -49457948 - MIR SINE MIR -18 244 1 1208 83 0 0 chr11 101326338 101326494 -49457059 - AluSg/x SINE Alu 0 312 157 262 350 24 81 chr11 101326657 101326780 -49456773 - L2 LINE L2 -20 3252 3137 244 226 0 65 chr11 101326783 101326845 -49456708 + L2 LINE L2 3207 3264 -8 243 0 0 0 chr11 101329150 101329177 -49454376 + (T)n Simple_repeat Simple_repeat 1 27 0 2877 200 8 2 chr11 101329400 101330004 -49453549 + L1MA6 LINE L1 5678 6285 -15 305 305 12 0 chr11 101330321 101330403 -49453150 - L2 LINE L2 -4 3309 3227 1186 190 41 0 chr11 101330768 101331037 -49452516 + L1MA4 LINE L1 6013 6292 -8 1093 289 77 25 chr11 101331545 101332023 -49451530 + L2 LINE L2 2811 3313 0 330 253 84 59 chr11 101333732 101333934 -49449619 - Charlie8 DNA MER1_type -2184 233 27 * 991 249 122 67 chr11 101333932 101334498 -49449055 - MER115 DNA AcHobo -9 684 88 259 328 72 32 chr11 101334664 101334789 -49448764 + MIR SINE MIR 20 149 -113 261 303 62 96 chr11 101336176 101336354 -49447199 - MIR SINE MIR -71 191 20 510 265 43 38 chr11 101336410 101336595 -49446958 - MIR SINE MIR -51 211 26 23 0 0 0 chr11 101337307 101337330 -49446223 + AT_rich Low_complexity Low_complexity 1 23 0 405 0 0 0 chr11 101337959 101338004 -49445549 + (TG)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chr11 101338362 101338382 -49445171 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 1212 109 11 0 chr11 101339358 101339533 -49444020 + AluSg/x SINE Alu 132 308 -2 406 191 29 0 chr11 101340224 101340329 -49443224 + CT-rich Low_complexity Low_complexity 2 109 0 2252 128 0 0 chr11 101340329 101340641 -49442912 - AluSq SINE Alu -1 312 1 2511 71 0 0 chr11 101340716 101341024 -49442529 + AluY SINE Alu 1 308 -3 609 279 88 17 chr11 101342385 101342625 -49440928 + MIR SINE MIR 5 261 -1 213 179 0 0 chr11 101343469 101343508 -49440045 + L2 LINE L2 3267 3305 -8 303 122 0 0 chr11 101344916 101344965 -49438588 + (TG)n Simple_repeat Simple_repeat 2 50 0 385 291 60 0 chr11 101345487 101345604 -49437949 - MIR SINE MIR -20 242 119 3278 191 66 44 chr11 101345661 101345905 -49437648 - L1MB8 LINE L1 0 6178 5941 1734 157 40 13 chr11 101345905 101346204 -49437349 - AluJo SINE Alu -5 307 1 3278 191 66 44 chr11 101346204 101347076 -49436477 - L1MB8 LINE L1 -237 5941 5040 180 0 0 0 chr11 101347779 101347799 -49435754 + (TG)n Simple_repeat Simple_repeat 2 21 0 2181 109 0 7 chr11 101348097 101348434 -49435119 - AluSx SINE Alu 0 312 1 275 275 34 11 chr11 101348898 101348989 -49434564 + MIR SINE MIR 51 151 -65 2668 153 40 55 chr11 101348999 101349522 -49434031 - MLT2B2 LTR ERVL 0 515 1 298 197 14 28 chr11 101349840 101349911 -49433642 - Charlie7 DNA MER1_type 0 2612 2543 28465 30 2 2 chr11 101350155 101354562 -49428991 + L1PA3 LINE L1 1749 6155 0 421 305 8 15 chr11 101354572 101354703 -49428850 - L2 LINE L2 0 3313 3184 205 289 40 111 chr11 101355236 101355461 -49428092 + L2 LINE L2 2955 3163 -109 737 248 68 15 chr11 101355635 101355841 -49427712 + MIR SINE MIR 2 218 -44 222 353 101 0 chr11 101356760 101356879 -49426674 + L2 LINE L2 3139 3269 -3 346 284 0 26 chr11 101356955 101357071 -49426482 - L1MC5 LINE L1 -44 7917 7805 210 235 49 37 chr11 101357391 101357472 -49426081 + MIR SINE MIR 109 190 -72 257 253 27 27 chr11 101358586 101358661 -49424892 - L2 LINE L2 -50 3222 3148 1809 204 25 47 chr11 101359949 101360420 -49423133 + MLT1C LTR MaLR 7 467 0 239 315 27 0 chr11 101360954 101361027 -49422526 + MIR SINE MIR 80 154 -108 392 341 11 86 chr11 101361264 101361531 -49422022 - MIR SINE MIR -2 260 14 346 250 40 10 chr11 101362060 101362160 -49421393 + MIR SINE MIR 89 191 -71 234 0 0 0 chr11 101363528 101363554 -49419999 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 2088 142 10 0 chr11 101363605 101363914 -49419639 - AluSx SINE Alu 0 312 1 1315 121 18 0 chr11 101363933 101364156 -49419397 - L1MA6 LINE L1 -2 6298 6072 188 183 0 17 chr11 101364396 101364456 -49419097 + GA-rich Low_complexity Low_complexity 2 60 0 276 337 71 0 chr11 101364904 101365002 -49418551 - MIR SINE MIR -90 172 68 214 290 0 18 chr11 101365199 101365255 -49418298 + MIR SINE MIR 99 152 -60 379 351 168 16 chr11 101365677 101365999 -49417554 + L3b LINE CR1 1111 1481 -102 250 283 0 0 chr11 101368214 101368274 -49415279 + (TA)n Simple_repeat Simple_repeat 2 61 0 4143 96 0 0 chr11 101368332 101368886 -49414667 - MER41A LTR ERV1 0 554 1 337 179 12 0 chr11 101368939 101369023 -49414530 - MER53 DNA DNA -104 85 1 308 272 22 33 chr11 101369028 101369120 -49414433 - MIR SINE MIR -84 178 88 219 261 104 35 chr11 101370526 101370641 -49412912 + MIR SINE MIR 81 203 -59 726 290 62 5 chr11 101372048 101372272 -49411281 - MIR SINE MIR -25 237 1 219 167 0 0 chr11 101372396 101372438 -49411115 + CT-rich Low_complexity Low_complexity 1 42 0 576 273 80 8 chr11 101372563 101372835 -49410718 + L1MC4 LINE L1 6441 6776 -1066 403 259 115 7 chr11 101372834 101372973 -49410580 + L1MC4 LINE L1 7547 7700 -342 * 313 222 0 12 chr11 101372998 101373079 -49410474 + L1MC4 LINE L1 7963 8042 0 22 0 0 0 chr11 101373634 101373656 -49409897 + AT_rich Low_complexity Low_complexity 1 22 0 422 285 48 12 chr11 101373837 101374002 -49409551 - L1ME LINE L1 -377 5744 5574 284 296 13 50 chr11 101375399 101375558 -49407995 - MLT1J2 LTR MaLR 0 450 298 181 231 19 19 chr11 101375917 101375969 -49407584 + L2 LINE L2 3258 3309 -4 1025 167 96 12 chr11 101378447 101378687 -49404866 + L1MC2 LINE L1 6066 6325 -19 2331 116 0 0 chr11 101378825 101379128 -49404425 - AluSg SINE Alu -7 303 1 384 239 39 52 chr11 101379146 101379301 -49404252 + L1MC5 LINE L1 7543 7695 -266 3387 149 77 6 chr11 101379315 101379993 -49403560 - L1MB2 LINE L1 0 6171 5446 1915 149 10 0 chr11 101380671 101380972 -49402581 + AluSx SINE Alu 1 304 -8 415 322 25 0 chr11 101381086 101381204 -49402349 - L2 LINE L2 -5 3267 3147 261 0 0 0 chr11 101381506 101381535 -49402018 + (TG)n Simple_repeat Simple_repeat 2 30 0 353 311 104 6 chr11 101383811 101383975 -49399578 - MIR SINE MIR -74 188 9 264 100 0 0 chr11 101384700 101384740 -49398813 + (TA)n Simple_repeat Simple_repeat 2 41 0 1624 186 52 0 chr11 101384740 101385020 -49398533 - AluJo SINE Alu -14 298 1 432 225 48 45 chr11 101385040 101385187 -49398366 - MIR SINE MIR -11 197 45 544 302 59 27 chr11 101385229 101385451 -49398102 + MIR SINE MIR 28 256 -6 2392 108 38 22 chr11 101385649 101386018 -49397535 - THE1C LTR MaLR 0 375 1 776 283 125 59 chr11 101387080 101387723 -49395830 - L2 LINE L2 0 3313 2646 1400 152 22 118 chr11 101387787 101388110 -49395443 + AluYb8 SINE Alu 2 293 -25 552 316 61 13 chr11 101388519 101388586 -49394967 - MIR SINE MIR -11 251 189 2097 89 0 89 chr11 101388586 101388911 -49394642 - AluSq SINE Alu -17 296 1 552 316 61 13 chr11 101388911 101389083 -49394470 - MIR SINE MIR -73 189 4 397 295 100 17 chr11 101391320 101391533 -49392020 + MIR SINE MIR 8 241 -21 193 381 0 0 chr11 101391940 101392003 -49391550 - L2 LINE L2 -69 3203 3141 216 0 0 0 chr11 101392228 101392252 -49391301 + (T)n Simple_repeat Simple_repeat 1 24 0 554 350 29 4 chr11 101393089 101393329 -49390224 - MIR SINE MIR -12 250 5 210 190 35 86 chr11 101393809 101393867 -49389686 - MIR SINE MIR -77 131 77 225 0 0 0 chr11 101395229 101395254 -49388299 + (TAA)n Simple_repeat Simple_repeat 2 26 0 346 320 166 29 chr11 101397082 101397360 -49386193 + L2 LINE L2 2996 3311 -2 1543 164 41 27 chr11 101397635 101397927 -49385626 - AluJo SINE Alu -15 297 2 1666 174 51 4 chr11 101397928 101398203 -49385350 - AluSx SINE Alu -24 288 1 506 259 11 76 chr11 101398418 101398603 -49384950 + MIR SINE MIR 89 261 -1 249 383 0 26 chr11 101399271 101399425 -49384128 - L2 LINE L2 -213 3059 2910 28 48 0 0 chr11 101399892 101399934 -49383619 + AT_rich Low_complexity Low_complexity 1 42 0 3482 205 53 13 chr11 101400284 101401736 -49381817 - L1MB8 LINE L1 -48 6130 4624 * 21507 82 8 5 chr11 101401724 101401736 -49381817 - L1P LINE L1 -3055 3091 3081 2372 91 0 19 chr11 101401736 101402055 -49381498 - AluSq SINE Alu 0 313 1 21507 82 8 5 chr11 101402055 101405123 -49378430 - L1P LINE L1 -3065 3081 2 4878 243 41 42 chr11 101405123 101406939 -49376614 - L1MB8 LINE L1 -1763 4383 2570 28 0 0 0 chr11 101407152 101407180 -49376373 + AT_rich Low_complexity Low_complexity 1 28 0 1100 222 42 69 chr11 101407264 101407624 -49375929 - MLT1A1 LTR MaLR -12 353 4 201 292 83 0 chr11 101408403 101408475 -49375078 - MER5A DNA MER1_type -77 112 35 * 233 276 66 13 chr11 101408421 101408497 -49375056 + MER5A DNA MER1_type 110 189 0 1405 135 19 0 chr11 101408595 101408802 -49374751 + AluSg/x SINE Alu 84 294 -18 218 321 0 0 chr11 101409742 101409795 -49373758 + L2 LINE L2 3134 3186 -86 2401 85 0 0 chr11 101410171 101410466 -49373087 + AluY SINE Alu 1 295 -16 275 359 99 56 chr11 101410487 101410899 -49372654 - L2 LINE L2 -12 3260 2831 1469 178 8 92 chr11 101411229 101411588 -49371965 - MLT1B LTR MaLR 0 390 62 27 0 0 0 chr11 101414073 101414100 -49369453 + AT_rich Low_complexity Low_complexity 1 27 0 231 301 95 43 chr11 101414408 101414638 -49368915 + MIR SINE MIR 1 238 -24 216 163 0 0 chr11 101415390 101415433 -49368120 + (CA)n Simple_repeat Simple_repeat 1 43 0 1598 164 53 27 chr11 101415921 101416220 -49367333 - AluJo SINE Alu -5 307 1 444 307 20 20 chr11 101416360 101416513 -49367040 - MER5A DNA MER1_type -5 184 32 651 331 139 30 chr11 101416537 101417225 -49366328 + L2 LINE L2 1796 2558 -756 224 252 142 55 chr11 101417299 101417426 -49366127 + L2 LINE L2 3175 3312 -1 2139 137 58 30 chr11 101417864 101418229 -49365324 + THE1C LTR MaLR 1 375 0 223 211 0 0 chr11 101420422 101420460 -49363093 - L2 LINE L2 -35 3237 3200 382 335 77 0 chr11 101420888 101421070 -49362483 - L3b LINE CR1 -254 1329 1134 1191 196 99 105 chr11 101421256 101421648 -49361905 + MLT1B LTR MaLR 1 390 0 23 0 0 0 chr11 101422072 101422095 -49361458 + AT_rich Low_complexity Low_complexity 1 23 0 1908 142 7 0 chr11 101422453 101422770 -49360783 - AluSx SINE Alu 0 320 2 189 220 0 102 chr11 101423548 101423607 -49359946 - L2 LINE L2 -6 3266 3214 216 111 0 0 chr11 101425982 101426018 -49357535 + (TC)n Simple_repeat Simple_repeat 1 36 0 283 310 55 71 chr11 101426732 101426987 -49356566 + MIR SINE MIR 9 259 -3 1680 154 45 0 chr11 101427436 101427702 -49355851 + AluJb SINE Alu 3 280 -32 1371 241 138 32 chr11 101427850 101428285 -49355268 - MLT1D LTR MaLR -4 501 21 186 291 51 13 chr11 101429414 101429493 -49354060 - MIR SINE MIR -21 241 160 274 345 26 0 chr11 101429936 101430049 -49353504 + MIR SINE MIR 34 149 -113 193 194 0 0 chr11 101430425 101430461 -49353092 + L2 LINE L2 3277 3312 -1 349 278 118 21 chr11 101432281 101432425 -49351128 + L2 LINE L2 3153 3310 -3 1618 290 73 2 chr11 101432526 101433030 -49350523 - MLT1H1 LTR MaLR -7 548 9 206 269 46 65 chr11 101433159 101433267 -49350286 - L2 LINE L2 -221 3051 2946 351 264 104 19 chr11 101434879 101435170 -49348383 + LTR16A LTR ERVL 12 368 -82 766 239 62 11 chr11 101437001 101437177 -49346376 + MER63A DNA MER1_type 1 185 -25 494 263 62 12 chr11 101437193 101437353 -49346200 + MIR SINE MIR 47 214 -48 230 269 129 0 chr11 101438528 101438621 -49344932 - MIR SINE MIR -59 203 99 22 0 0 0 chr11 101438837 101438859 -49344694 + AT_rich Low_complexity Low_complexity 1 22 0 2069 130 14 0 chr11 101439359 101439652 -49343901 + AluSx SINE Alu 4 300 -12 181 333 18 63 chr11 101439723 101439834 -49343719 + L2 LINE L2 3003 3108 -164 669 292 142 86 chr11 101440771 101441685 -49341868 + L2 LINE L2 2214 3180 -133 261 0 0 0 chr11 101441685 101441714 -49341839 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 669 292 142 86 chr11 101441714 101441854 -49341699 + L2 LINE L2 3180 3311 -2 221 302 32 0 chr11 101441886 101441949 -49341604 + MIR SINE MIR 79 143 -65 245 283 24 88 chr11 101444123 101444328 -49339225 + L3 LINE CR1 677 868 -709 1682 210 35 0 chr11 101444396 101444772 -49338781 - Charlie5 DNA MER1_type 0 2624 2236 443 246 74 16 chr11 101444782 101444904 -49338649 - MER3 DNA MER1_type -87 122 41 405 129 0 0 chr11 101445386 101445456 -49338097 + (CAT)n Simple_repeat Simple_repeat 3 72 0 250 345 72 29 chr11 101445625 101445764 -49337789 - MIR SINE MIR -98 164 20 183 179 18 71 chr11 101446026 101446082 -49337471 - MIR SINE MIR -109 153 101 22 0 0 0 chr11 101446656 101446678 -49336875 + AT_rich Low_complexity Low_complexity 1 22 0 225 336 134 65 chr11 101449938 101450503 -49333050 + L2 LINE L2 2257 2860 -454 823 180 8 0 chr11 101452366 101452488 -49331065 + FLAM_C SINE Alu 1 123 -10 2370 65 0 33 chr11 101452830 101453137 -49330416 - AluY SINE Alu -13 298 2 362 230 47 74 chr11 101453267 101453415 -49330138 - MLT1J2 LTR MaLR -223 227 84 247 167 21 0 chr11 101453458 101453506 -49330047 - MLT1J1 LTR MaLR -363 83 35 304 190 139 25 chr11 101453563 101453642 -49329911 + MIR3 SINE MIR 111 198 -10 543 315 45 21 chr11 101454985 101455213 -49328340 + MIR SINE MIR 19 250 -12 309 258 0 86 chr11 101455227 101455320 -49328233 + MIR3 SINE MIR 114 198 -10 490 318 40 6 chr11 101456163 101456339 -49327214 + MIR SINE MIR 11 192 -70 336 353 16 25 chr11 101456391 101456513 -49327040 + MIR SINE MIR 23 143 -119 327 237 84 68 chr11 101457364 101457511 -49326042 + L2 LINE L2 2710 2862 -452 1977 146 3 0 chr11 101457511 101457805 -49325748 - AluSx SINE Alu 0 312 18 327 237 84 68 chr11 101457805 101457847 -49325706 + L2 LINE L2 2862 2902 -412 180 261 22 0 chr11 101457926 101457972 -49325581 - L3 LINE CR1 -1235 342 296 * 409 336 80 37 chr11 101457946 101458273 -49325280 + L2 LINE L2 2955 3295 -18 189 0 0 0 chr11 101458280 101458301 -49325252 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 2170 91 0 44 chr11 101458302 101458619 -49324934 + AluSq SINE Alu 1 304 0 557 291 157 41 chr11 101459115 101459528 -49324025 + L3 LINE CR1 1114 1574 -3 208 373 27 0 chr11 101459825 101459900 -49323653 - L2 LINE L2 0 3313 3237 2125 134 0 0 chr11 101460376 101460660 -49322893 + AluSx SINE Alu 1 284 -28 241 294 0 0 chr11 101460377 101460689 -49322864 + AluSp SINE Alu 137 448 0 24 0 0 0 chr11 101460977 101461001 -49322552 + AT_rich Low_complexity Low_complexity 1 24 0 1900 149 3 20 chr11 101461001 101461296 -49322257 - AluJo SINE Alu -22 290 1 300 375 136 11 chr11 101462728 101462912 -49320641 - MIR SINE MIR -23 239 33 283 248 60 64 chr11 101463523 101463681 -49319872 - MIR SINE MIR -69 139 6 889 216 64 31 chr11 101463989 101464186 -49319367 - MSTD LTR MaLR -12 353 130 2498 126 43 166 chr11 101464186 101464909 -49318644 - MER51A LTR ERV1 0 634 1 889 216 64 31 chr11 101464909 101465044 -49318509 - MSTD LTR MaLR -235 130 1 3590 195 50 14 chr11 101465265 101465728 -49317825 - L1PB4 LINE L1 -1 6155 5710 240 100 0 0 chr11 101465728 101465768 -49317785 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 3590 195 50 14 chr11 101465768 101466023 -49317530 - L1PB4 LINE L1 -446 5710 5466 2496 73 0 0 chr11 101466023 101466323 -49317230 + AluY SINE Alu 1 300 -11 3590 195 50 14 chr11 101466323 101467088 -49316465 - L1PB4 LINE L1 -690 5466 4628 372 344 73 29 chr11 101467136 101467357 -49316196 - MIR SINE MIR -17 245 16 729 290 92 74 chr11 101467523 101467958 -49315595 - L2 LINE L2 0 3313 2871 839 264 16 58 chr11 101468519 101468777 -49314776 + MIR SINE MIR 14 260 -2 222 182 0 0 chr11 101468912 101468956 -49314597 + MIR SINE MIR 98 141 -67 452 256 8 51 chr11 101469070 101469187 -49314366 + MER81 DNA DNA 1 112 -2 2185 110 23 0 chr11 101469250 101469550 -49314003 + AluSx SINE Alu 1 307 -5 41 58 0 0 chr11 101472018 101472087 -49311466 + AT_rich Low_complexity Low_complexity 1 69 0 297 260 13 52 chr11 101472088 101472165 -49311388 - L2 LINE L2 -1 3271 3198 188 303 106 0 chr11 101472208 101472274 -49311279 - L2 LINE L2 -75 3197 3125 208 300 71 0 chr11 101472503 101472573 -49310980 - MIR SINE MIR -124 138 64 25 0 0 0 chr11 101473579 101473604 -49309949 + AT_rich Low_complexity Low_complexity 1 25 0 470 281 96 0 chr11 101473650 101473817 -49309736 - MIR SINE MIR -33 229 47 1281 165 50 43 chr11 101474382 101474661 -49308892 + AluJo SINE Alu 1 281 -31 26 0 0 0 chr11 101474661 101474687 -49308866 + AT_rich Low_complexity Low_complexity 1 26 0 944 175 0 11 chr11 101474934 101475111 -49308442 + MER5B DNA MER1_type 1 175 -3 326 298 36 0 chr11 101475159 101475243 -49308310 - MER5A DNA MER1_type -94 95 9 245 326 61 20 chr11 101475320 101475418 -49308135 + MIR3 SINE MIR 90 191 -17 532 260 264 10 chr11 101475488 101475696 -49307857 - MIR SINE MIR 0 262 2 216 150 50 0 chr11 101476190 101476230 -49307323 + (CATG)n Simple_repeat Simple_repeat 3 44 0 445 296 9 0 chr11 101477657 101477765 -49305788 - MIR SINE MIR -67 141 33 1551 191 53 3 chr11 101477862 101478144 -49305409 - AluJo SINE Alu -16 296 1 186 267 208 40 chr11 101478152 101478253 -49305300 + MIR SINE MIR 48 165 -97 338 250 12 0 chr11 101478368 101478452 -49305101 + MIR SINE MIR 173 257 -5 309 325 75 8 chr11 101478767 101478887 -49304666 - L2 LINE L2 -5 3308 3181 249 225 25 25 chr11 101479908 101479988 -49303565 + T-rich Low_complexity Low_complexity 4 83 0 198 0 0 0 chr11 101480393 101480415 -49303138 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 910 173 0 22 chr11 101480499 101480684 -49302869 - L1MB8 LINE L1 0 6178 5998 281 271 12 65 chr11 101481732 101481836 -49301717 - MER5A DNA MER1_type -66 123 14 867 160 32 14 chr11 101482395 101482609 -49300944 + L1MA7 LINE L1 6071 6295 -10 291 161 0 0 chr11 101484705 101484761 -49298792 + (CA)n Simple_repeat Simple_repeat 2 57 0 296 292 99 50 chr11 101484832 101484993 -49298560 + MIR SINE MIR 20 188 -74 998 194 35 17 chr11 101485629 101485660 -49297893 - MER46A DNA MER2_type -2495 236 207 1135 211 3 20 chr11 101485660 101485963 -49297590 + L1MA4 LINE L1 5999 6296 -4 998 194 35 17 chr11 101485963 101486163 -49297390 - MER46A DNA MER2_type -2524 207 1 305 235 59 73 chr11 101486172 101486308 -49297245 + MIR SINE MIR 129 262 0 188 233 23 0 chr11 101486463 101486506 -49297047 - L2 LINE L2 -38 3275 3232 435 285 97 52 chr11 101486681 101487011 -49296542 - L2 LINE L2 -405 2909 2565 203 125 25 0 chr11 101487231 101487271 -49296282 + CT-rich Low_complexity Low_complexity 2 42 0 495 318 85 18 chr11 101488449 101488672 -49294881 + MIR SINE MIR 21 258 -4 257 270 70 10 chr11 101488864 101488964 -49294589 + MIR SINE MIR 64 169 -93 296 310 24 11 chr11 101490393 101490483 -49293070 - MIR SINE MIR -59 149 58 1986 159 10 47 chr11 101490864 101491267 -49292286 + MLT1B LTR MaLR 1 388 -2 960 90 28 11 chr11 101491756 101491933 -49291620 + (TGG)n Simple_repeat Simple_repeat 1 180 0 841 85 40 23 chr11 101491949 101492126 -49291427 + (TGG)n Simple_repeat Simple_repeat 1 180 0 236 294 95 43 chr11 101492450 101492680 -49290873 - MIR SINE MIR -24 238 1 27 0 0 0 chr11 101492988 101493015 -49290538 + AT_rich Low_complexity Low_complexity 1 27 0 1326 173 8 93 chr11 101495500 101495853 -49287700 + MLT1B LTR MaLR 68 390 0 310 358 102 53 chr11 101496165 101496595 -49286958 + L2 LINE L2 2810 3260 -12 2369 92 0 0 chr11 101496616 101496911 -49286642 - AluY SINE Alu -16 295 1 217 321 0 0 chr11 101497287 101497340 -49286213 - L2 LINE L2 -86 3186 3134 1435 130 19 0 chr11 101498255 101498462 -49285091 - AluSg/x SINE Alu -19 293 83 233 276 66 13 chr11 101498559 101498635 -49284918 - MER5A DNA MER1_type 0 189 110 201 292 83 0 chr11 101498581 101498653 -49284900 + MER5A DNA MER1_type 35 112 -77 * 1087 225 42 69 chr11 101499432 101499792 -49283761 + MLT1A1 LTR MaLR 4 353 -12 28 0 0 0 chr11 101499876 101499904 -49283649 + AT_rich Low_complexity Low_complexity 1 28 0 4969 240 41 42 chr11 101500117 101501933 -49281620 + L1MB8 LINE L1 2570 4383 -1763 21567 82 8 5 chr11 101501933 101505002 -49278551 + L1P LINE L1 2 3081 -3065 2385 91 0 19 chr11 101505002 101505321 -49278232 + AluSq SINE Alu 1 313 0 3441 208 53 13 chr11 101505321 101506773 -49276780 + L1MB8 LINE L1 4624 6130 -48 26 50 0 0 chr11 101507123 101507163 -49276390 + AT_rich Low_complexity Low_complexity 1 40 0 249 383 0 26 chr11 101507630 101507784 -49275769 + L2 LINE L2 2910 3059 -213 506 259 11 76 chr11 101508452 101508637 -49274916 - MIR SINE MIR -1 261 89 1597 186 51 4 chr11 101508852 101509127 -49274426 + AluSx SINE Alu 1 288 -24 1543 164 41 27 chr11 101509128 101509420 -49274133 + AluJo SINE Alu 2 297 -15 365 314 202 21 chr11 101509695 101509982 -49273571 - L2 LINE L2 -2 3311 2973 468 0 0 0 chr11 101511801 101511853 -49271700 + (TTA)n Simple_repeat Simple_repeat 2 53 0 554 350 29 4 chr11 101513753 101513993 -49269560 + MIR SINE MIR 5 250 -12 225 0 0 0 chr11 101514830 101514855 -49268698 + (A)n Simple_repeat Simple_repeat 1 25 0 994 92 44 3 chr11 101515197 101515548 -49268005 + (CCA)n Simple_repeat Simple_repeat 1 365 0 1986 159 10 47 chr11 101516037 101516440 -49267113 - MLT1B LTR MaLR -2 388 1 296 310 24 11 chr11 101516821 101516911 -49266642 + MIR SINE MIR 58 149 -59 257 270 70 10 chr11 101518340 101518440 -49265113 - MIR SINE MIR -93 169 64 495 318 85 18 chr11 101518632 101518855 -49264698 - MIR SINE MIR -4 258 21 203 125 25 0 chr11 101520033 101520073 -49263480 + GA-rich Low_complexity Low_complexity 2 42 0 416 285 97 52 chr11 101520293 101520623 -49262930 + L2 LINE L2 2565 2909 -405 188 233 23 0 chr11 101520798 101520841 -49262712 + L2 LINE L2 3232 3275 -38 305 235 59 73 chr11 101520996 101521132 -49262421 - MIR SINE MIR 0 262 129 998 194 35 17 chr11 101521141 101521341 -49262212 + MER46A DNA MER2_type 1 207 -2524 1135 211 3 20 chr11 101521341 101521644 -49261909 - L1MA4 LINE L1 -4 6296 5999 998 194 35 17 chr11 101521644 101521675 -49261878 + MER46A DNA MER2_type 207 236 0 312 286 99 50 chr11 101522311 101522472 -49261081 - MIR SINE MIR -74 188 20 291 161 0 0 chr11 101522543 101522599 -49260954 + (TG)n Simple_repeat Simple_repeat 2 57 0 203 86 0 29 chr11 101524703 101524738 -49258815 + (TA)n Simple_repeat Simple_repeat 1 34 0 839 143 33 16 chr11 101524738 101524912 -49258641 - L1MA7 LINE L1 -41 6250 6071 304 265 10 63 chr11 101525471 101525575 -49257978 + MER5A DNA MER1_type 14 123 -66 910 173 0 22 chr11 101526623 101526808 -49256745 + L1MB8 LINE L1 5998 6178 0 198 0 0 0 chr11 101526892 101526914 -49256639 + (TGAA)n Simple_repeat Simple_repeat 4 25 0 224 238 25 25 chr11 101527319 101527399 -49256154 + A-rich Low_complexity Low_complexity 4 83 0 309 325 75 8 chr11 101528420 101528540 -49255013 + L2 LINE L2 3181 3308 -5 338 250 12 0 chr11 101528855 101528939 -49254614 - MIR SINE MIR -5 257 173 186 267 208 40 chr11 101529054 101529155 -49254398 - MIR SINE MIR -97 165 48 1551 191 53 3 chr11 101529163 101529445 -49254108 + AluJo SINE Alu 1 296 -16 445 296 9 0 chr11 101529542 101529650 -49253903 + MIR SINE MIR 33 141 -67 216 150 50 0 chr11 101531077 101531117 -49252436 + (CATG)n Simple_repeat Simple_repeat 1 42 0 519 264 264 10 chr11 101531611 101531819 -49251734 + MIR SINE MIR 2 262 0 245 326 61 20 chr11 101531889 101531987 -49251566 - MIR3 SINE MIR -17 191 90 326 298 36 0 chr11 101532064 101532148 -49251405 + MER5A DNA MER1_type 9 95 -94 944 175 0 11 chr11 101532196 101532373 -49251180 - MER5B DNA MER1_type -3 175 1 26 0 0 0 chr11 101532620 101532646 -49250907 + AT_rich Low_complexity Low_complexity 1 26 0 1281 165 50 43 chr11 101532646 101532925 -49250628 - AluJo SINE Alu -31 281 1 470 281 96 0 chr11 101533490 101533657 -49249896 + MIR SINE MIR 47 229 -33 25 0 0 0 chr11 101533703 101533728 -49249825 + AT_rich Low_complexity Low_complexity 1 25 0 208 300 71 0 chr11 101534734 101534804 -49248749 + MIR SINE MIR 64 138 -124 188 303 106 0 chr11 101535033 101535099 -49248454 + L2 LINE L2 3125 3197 -75 297 260 13 52 chr11 101535142 101535219 -49248334 + L2 LINE L2 3198 3271 -1 41 58 0 0 chr11 101535220 101535289 -49248264 + AT_rich Low_complexity Low_complexity 1 69 0 2173 113 17 0 chr11 101537757 101538048 -49245505 - AluSx SINE Alu -16 296 1 468 248 8 51 chr11 101538111 101538228 -49245325 - MER81 DNA DNA -2 112 1 222 182 0 0 chr11 101538342 101538386 -49245167 - MIR SINE MIR -67 141 98 839 264 16 58 chr11 101538521 101538779 -49244774 - MIR SINE MIR -2 260 14 739 287 92 74 chr11 101539340 101539775 -49243778 + L2 LINE L2 2871 3313 0 372 344 73 29 chr11 101539941 101540162 -49243391 + MIR SINE MIR 16 245 -17 3196 204 21 12 chr11 101540210 101540975 -49242578 + L1 LINE L1 4628 5399 -747 225 0 0 0 chr11 101540975 101541000 -49242553 + (T)n Simple_repeat Simple_repeat 1 25 0 576 198 9 9 chr11 101541190 101541413 -49242140 + (TGG)n Simple_repeat Simple_repeat 1 223 0 520 213 194 6 chr11 101543704 101543864 -49239689 + MIR SINE MIR 72 261 -1 218 310 0 23 chr11 101543988 101544075 -49239478 + MIR SINE MIR 175 259 -3 291 273 15 0 chr11 101544849 101544915 -49238638 + L2 LINE L2 3242 3308 -5 555 263 56 94 chr11 101546293 101546632 -49236921 - L1ME4a LINE L1 -9 6112 5787 263 188 0 0 chr11 101547222 101547270 -49236283 - MIR3 SINE MIR -4 204 157 187 345 18 0 chr11 101550071 101550126 -49233427 + L2 LINE L2 3202 3257 -15 258 32 0 0 chr11 101550129 101550160 -49233393 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 28 38 0 19 chr11 101550399 101550416 -49233137 + AT_rich Low_complexity Low_complexity 1 17 -35 2306 96 0 10 chr11 101550416 101550730 -49232823 + AluY SINE Alu 1 311 0 28 38 0 19 chr11 101550730 101550765 -49232788 + AT_rich Low_complexity Low_complexity 17 52 0 217 294 0 0 chr11 101550830 101550881 -49232672 + (CA)n Simple_repeat Simple_repeat 1 51 0 185 365 52 0 chr11 101551048 101551144 -49232409 - L2 LINE L2 -219 3053 2953 507 299 45 31 chr11 101552206 101552430 -49231123 + MIR SINE MIR 10 236 -26 497 249 30 35 chr11 101553235 101553404 -49230149 + MLT1H LTR MaLR 3 213 -336 1537 209 42 17 chr11 101553451 101553858 -49229695 - LTR52 LTR ERVL -3 418 2 380 284 73 34 chr11 101553858 101554062 -49229491 + L2 LINE L2 3098 3309 -4 1705 157 29 32 chr11 101554669 101555012 -49228541 + MER2 DNA MER2_type 2 343 -1 459 0 0 0 chr11 101555013 101555064 -49228489 + (TG)n Simple_repeat Simple_repeat 2 52 0 1255 96 82 19 chr11 101556230 101556438 -49227115 - L1PA11 LINE L1 -2 6172 5952 613 167 14 35 chr11 101556586 101556730 -49226823 + L1MB8 LINE L1 6030 6170 -8 2016 148 72 17 chr11 101556963 101557308 -49226245 - THE1B LTR MaLR 0 364 1 11290 89 10 1 chr11 101557312 101558873 -49224680 - THE1B-int LTR MaLR -5 1575 1 2283 108 73 14 chr11 101558873 101559217 -49224336 - THE1B LTR MaLR 0 364 1 1147 251 73 46 chr11 101559297 101559779 -49223774 - MLT1H LTR MaLR 0 549 11 25 51 0 0 chr11 101561203 101561242 -49222311 + AT_rich Low_complexity Low_complexity 1 39 0 466 233 0 0 chr11 101561301 101561430 -49222123 + L1MA4 LINE L1 6165 6293 -7 279 304 20 39 chr11 101562586 101562688 -49220865 - L2 LINE L2 -39 3233 3134 26 50 0 0 chr11 101562794 101562834 -49220719 + AT_rich Low_complexity Low_complexity 1 40 0 196 30 61 0 chr11 101563518 101563551 -49220002 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 262 167 0 0 chr11 101563552 101563594 -49219959 - MER66B LTR ERV1 -141 345 304 1158 243 105 70 chr11 101563835 101564321 -49219232 - MLT1D LTR MaLR -2 503 1 390 197 26 0 chr11 101564631 101564707 -49218846 - U13 snRNA snRNA -25 79 2 2345 74 3 3 chr11 101564719 101565016 -49218537 - AluSg SINE Alu -13 297 1 22 35 0 0 chr11 101565113 101565142 -49218411 + AT_rich Low_complexity Low_complexity 1 29 0 286 176 118 59 chr11 101565229 101565331 -49218222 + L1ME4a LINE L1 6002 6109 -12 1672 165 21 7 chr11 101565355 101565640 -49217913 + AluJo SINE Alu 5 293 -19 682 174 122 12 chr11 101566550 101566722 -49216831 + MER20 DNA MER1_type 24 214 -5 263 274 16 0 chr11 101567174 101567236 -49216317 + L2 LINE L2 3208 3270 -2 394 260 107 56 chr11 101567835 101568031 -49215522 + MIR SINE MIR 1 206 -56 257 279 21 107 chr11 101568031 101568171 -49215382 - L2 LINE L2 -6 3266 3139 284 349 24 6 chr11 101568965 101569131 -49214422 - L2 LINE L2 -934 2380 2212 236 294 0 0 chr11 101569576 101569627 -49213926 - L2 LINE L2 -24 3289 3239 357 357 48 28 chr11 101570122 101570371 -49213182 - L2 LINE L2 -607 2707 2454 405 0 0 0 chr11 101570849 101570894 -49212659 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 218 330 19 29 chr11 101571063 101571166 -49212387 + L2 LINE L2 3206 3307 -6 438 281 82 31 chr11 101571166 101571362 -49212191 - MIR SINE MIR -56 206 1 231 88 0 0 chr11 101572805 101572839 -49210714 + (TG)n Simple_repeat Simple_repeat 1 34 0 287 348 89 7 chr11 101573738 101573873 -49209680 + L2 LINE L2 3125 3270 -2 350 268 46 65 chr11 101574062 101574215 -49209338 + MIR SINE MIR 67 216 -46 1518 194 3 37 chr11 101576343 101576642 -49206911 - AluJo SINE Alu -23 289 1 250 340 57 19 chr11 101577318 101577424 -49206129 - L2 LINE L2 -12 3260 3151 321 212 97 62 chr11 101577704 101577762 -49205791 + L2 LINE L2 3151 3205 -67 1960 179 88 0 chr11 101577762 101578126 -49205427 + MSTD LTR MaLR 1 396 0 321 212 97 62 chr11 101578126 101578180 -49205373 + L2 LINE L2 3205 3267 -5 360 226 57 9 chr11 101578380 101578486 -49205067 + MER103 DNA DNA 11 121 -45 224 335 149 21 chr11 101578585 101578773 -49204780 - L2 LINE L2 -551 2763 2552 390 331 8 8 chr11 101578816 101578940 -49204613 + MER91A DNA MER1_type 19 142 -54 2349 158 63 27 chr11 101578946 101579357 -49204196 + MSTC LTR MaLR 1 426 -2 485 240 107 40 chr11 101579966 101580116 -49203437 - Charlie8 DNA MER1_type -2256 161 2 291 200 31 0 chr11 101581094 101581159 -49202394 - L2 LINE L2 0 3313 3247 2254 152 28 6 chr11 101581451 101581807 -49201746 - THE1B LTR MaLR 0 364 1 11675 100 32 8 chr11 101581807 101583349 -49200204 - THE1B-int LTR MaLR 0 1580 2 2463 133 25 0 chr11 101583350 101583703 -49199850 - THE1B LTR MaLR 0 364 3 213 171 13 40 chr11 101583713 101583789 -49199764 + CT-rich Low_complexity Low_complexity 2 75 0 345 131 0 0 chr11 101584564 101584625 -49198928 + (CA)n Simple_repeat Simple_repeat 2 62 0 384 212 8 91 chr11 101584718 101584850 -49198703 + MIR3 SINE MIR 87 207 -1 1386 148 73 11 chr11 101585665 101585925 -49197628 - LTR54 LTR ERV1 -8 502 260 234 0 0 0 chr11 101585925 101585951 -49197602 + (TC)n Simple_repeat Simple_repeat 1 26 0 1386 148 73 11 chr11 101585951 101586101 -49197452 - LTR54 LTR ERV1 -250 260 4 403 291 33 3 chr11 101586470 101586659 -49196894 + MIR SINE MIR 2 240 -22 241 364 59 23 chr11 101586838 101587058 -49196495 + L3 LINE CR1 57 284 -1293 346 317 49 48 chr11 101587076 101587312 -49196241 + MIR SINE MIR 11 252 -10 1076 193 82 0 chr11 101587354 101587561 -49195992 - MER58A DNA MER1_type 0 224 1 234 270 16 16 chr11 101587564 101587627 -49195926 + MIR SINE MIR 34 96 -166 428 263 105 53 chr11 101587634 101587824 -49195729 + MIR SINE MIR 63 262 0 372 353 89 44 chr11 101587827 101588210 -49195343 + L3 LINE CR1 757 1156 -421 643 211 56 15 chr11 101588315 101588519 -49195034 + MLT1H LTR MaLR 3 208 -341 342 137 74 0 chr11 101588516 101588585 -49194968 + MLT1G3 LTR MaLR 249 420 -175 * 298 250 0 141 chr11 101588724 101588852 -49194701 + L3 LINE CR1 1273 1382 -195 1116 142 16 0 chr11 101588857 101589047 -49194506 + L1MA8 LINE L1 5494 5686 -626 2204 122 82 3 chr11 101589047 101589064 -49194489 + L1PB1 LINE L1 5764 5778 -373 234 0 0 0 chr11 101589064 101589090 -49194463 + (TG)n Simple_repeat Simple_repeat 2 27 0 2204 122 82 3 chr11 101589090 101589426 -49194127 + L1PB1 LINE L1 5778 6145 -6 24 0 0 0 chr11 101589432 101589456 -49194097 + AT_rich Low_complexity Low_complexity 1 24 0 3123 132 39 77 chr11 101589484 101589634 -49193919 + L1MA8 LINE L1 5675 5829 -462 2551 60 0 10 chr11 101589634 101589948 -49193605 + AluY SINE Alu 1 311 0 1483 133 0 48 chr11 101589954 101590202 -49193351 + AluSc SINE Alu 73 308 -1 3123 132 39 77 chr11 101590202 101590522 -49193031 + L1MA8 LINE L1 5834 6126 -165 2078 123 0 3 chr11 101590522 101590834 -49192719 - AluSx SINE Alu 0 311 1 3123 132 39 77 chr11 101590834 101590992 -49192561 + L1MA8 LINE L1 6126 6288 -3 220 374 68 14 chr11 101590994 101591141 -49192412 + L3 LINE CR1 1371 1525 -52 575 341 15 26 chr11 101591243 101591441 -49192112 - L2 LINE L2 0 3313 3117 1648 164 115 7 chr11 101591441 101591746 -49191807 - MER44D DNA MER2_type -1 608 1 575 341 15 26 chr11 101591746 101591817 -49191736 - L2 LINE L2 -196 3117 3047 208 274 19 123 chr11 101591896 101592002 -49191551 - L2 LINE L2 -44 3269 3175 2509 81 3 0 chr11 101592227 101592536 -49191017 - AluSp SINE Alu -3 310 1 283 297 54 0 chr11 101593080 101593154 -49190399 - L2 LINE L2 -74 3198 3121 501 313 132 54 chr11 101593478 101594536 -49189017 - L2 LINE L2 -49 3223 2074 332 311 115 43 chr11 101594561 101594934 -49188619 - L2 LINE L2 -2 3311 2912 304 245 122 87 chr11 101595901 101596097 -49187456 + MIR SINE MIR 60 262 0 2135 188 37 0 chr11 101596401 101596753 -49186800 - MLT1A1 LTR MaLR 0 365 1 783 238 130 48 chr11 101596753 101597022 -49186531 - MLT1A2 LTR MaLR -81 293 3 2296 90 0 3 chr11 101598195 101598483 -49185070 + AluSx SINE Alu 8 294 -18 1214 221 154 42 chr11 101598764 101599172 -49184381 + LTR16A1 LTR ERVL 4 457 0 24 0 0 0 chr11 101599335 101599359 -49184194 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr11 101599732 101599759 -49183794 + (CA)n Simple_repeat Simple_repeat 1 27 0 200 182 0 0 chr11 101600459 101600492 -49183061 + GA-rich Low_complexity Low_complexity 4 36 0 205 269 0 0 chr11 101600741 101600793 -49182760 + T-rich Low_complexity Low_complexity 2 53 0 2305 99 0 10 chr11 101602279 101602581 -49180972 + AluSx SINE Alu 1 299 -13 219 114 0 0 chr11 101606991 101607026 -49176527 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 368 278 102 0 chr11 101609891 101609999 -49173554 - MIR3 SINE MIR -87 121 3 194 200 0 0 chr11 101610083 101610118 -49173435 - MER5B DNA MER1_type -142 36 2 385 254 0 27 chr11 101610692 101610802 -49172751 - MIR3 SINE MIR -6 202 96 185 229 0 0 chr11 101611087 101611122 -49172431 - MER5B DNA MER1_type -137 41 7 347 143 0 0 chr11 101611122 101611178 -49172375 - MER94 DNA DNA -78 56 1 192 365 0 0 chr11 101611731 101611794 -49171759 - L2 LINE L2 -3 3310 3248 540 359 59 13 chr11 101612941 101613178 -49170375 + MIR SINE MIR 12 259 -3 608 265 124 27 chr11 101614591 101614848 -49168705 + L1MC4 LINE L1 6767 7048 -994 180 298 0 0 chr11 101614882 101614929 -49168624 - MIR SINE MIR -65 197 151 2042 201 147 80 chr11 101614929 101615465 -49168088 + MLT1E2 LTR MaLR 1 589 -35 1928 166 0 16 chr11 101615465 101615779 -49167774 - AluJb SINE Alu -3 309 1 2042 201 147 80 chr11 101615779 101615814 -49167739 + MLT1E2 LTR MaLR 589 620 -4 318 197 0 0 chr11 101615815 101615876 -49167677 - MIR SINE MIR -104 158 98 22 0 0 0 chr11 101616254 101616276 -49167277 + AT_rich Low_complexity Low_complexity 1 22 0 1966 97 67 30 chr11 101616297 101616597 -49166956 - AluSx SINE Alu -1 311 1 252 288 38 0 chr11 101616649 101616729 -49166824 - MIR SINE MIR -102 160 78 294 342 71 29 chr11 101616835 101617075 -49166478 + MIR SINE MIR 7 256 -6 1250 203 146 35 chr11 101617261 101617379 -49166174 + AluJo SINE Alu 1 105 -197 189 0 0 0 chr11 101617379 101617400 -49166153 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1250 203 146 35 chr11 101617400 101617542 -49166011 + AluJo SINE Alu 105 290 -12 1306 175 171 4 chr11 101617548 101617794 -49165759 + AluJb SINE Alu 1 287 -15 29 0 0 0 chr11 101617795 101617824 -49165729 + AT_rich Low_complexity Low_complexity 1 29 0 2299 113 0 0 chr11 101618312 101618614 -49164939 + AluSg SINE Alu 2 303 -7 27 0 0 0 chr11 101618726 101618753 -49164800 + AT_rich Low_complexity Low_complexity 1 27 0 1489 174 82 0 chr11 101618763 101619033 -49164520 + AluJo SINE Alu 6 297 -15 795 309 103 23 chr11 101620508 101621365 -49162188 + L1ME4a LINE L1 4025 4949 -1197 1575 241 44 36 chr11 101621621 101622145 -49161408 + L1ME4a LINE L1 5276 5803 -2005 1261 167 19 0 chr11 101622182 101622392 -49161161 - MER20 DNA MER1_type 0 219 6 321 280 37 9 chr11 101622949 101623056 -49160497 + L1ME4a LINE L1 5988 6097 -24 1102 242 9 55 chr11 101623970 101624300 -49159253 + MER46C DNA MER2_type 2 316 -22 228 154 46 62 chr11 101624914 101624979 -49158574 + L1MC4a LINE L1 6277 6340 -1468 237 222 30 10 chr11 101625112 101625211 -49158342 + (TAA)n Simple_repeat Simple_repeat 3 103 0 3151 196 60 115 chr11 101625304 101626762 -49156791 + L1MC5 LINE L1 6500 7885 -76 465 248 86 0 chr11 101628637 101628754 -49154799 - L2 LINE L2 0 3313 3187 1440 192 45 7 chr11 101628966 101629252 -49154301 - MER58B DNA MER1_type -44 297 1 27 49 0 0 chr11 101629266 101629307 -49154246 + AT_rich Low_complexity Low_complexity 1 41 0 967 126 0 0 chr11 101629333 101629460 -49154093 - FLAM_C SINE Alu -6 127 1 275 256 0 13 chr11 101629897 101629975 -49153578 - MIR SINE MIR -1 261 185 276 284 182 71 chr11 101630117 101630247 -49153306 - MIR SINE MIR -1 261 147 1876 121 22 63 chr11 101630247 101630562 -49152991 + AluSx SINE Alu 1 302 -10 267 31 0 0 chr11 101630565 101630597 -49152956 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 276 284 182 71 chr11 101630597 101630687 -49152866 - MIR SINE MIR -116 146 12 1521 184 0 28 chr11 101630790 101631072 -49152481 - AluJo SINE Alu -20 292 19 365 303 0 53 chr11 101631461 101631613 -49151940 + MIR SINE MIR 110 253 -9 2362 137 117 8 chr11 101631696 101632082 -49151471 - MSTA LTR MaLR 0 428 1 9976 133 23 39 chr11 101632082 101633686 -49149867 - MSTA-int LTR MaLR 0 1580 3 2377 155 67 12 chr11 101633688 101634094 -49149459 - MSTA LTR MaLR 0 428 1 1304 116 0 16 chr11 101634531 101634720 -49148833 - AluSc SINE Alu -5 304 119 2095 142 8 23 chr11 101636574 101636745 -49146808 + MER47A DNA MER2_type 20 192 -2131 2481 118 19 16 chr11 101636745 101637119 -49146434 - THE1C LTR MaLR 0 375 1 2095 142 8 23 chr11 101637119 101637299 -49146254 + MER47A DNA MER2_type 192 366 0 237 238 32 16 chr11 101637985 101638048 -49145505 + MIR3 SINE MIR 108 171 -37 22 0 0 0 chr11 101638139 101638161 -49145392 + AT_rich Low_complexity Low_complexity 1 22 0 190 214 24 0 chr11 101638255 101638297 -49145256 + L2 LINE L2 3228 3270 -2 198 286 229 19 chr11 101638548 101638653 -49144900 + L2 LINE L2 3141 3267 -5 203 346 19 77 chr11 101639871 101639975 -49143578 + MIR3 SINE MIR 14 111 -97 360 288 225 5 chr11 101640048 101640239 -49143314 - MIR SINE MIR 0 262 30 1494 162 106 50 chr11 101640310 101640631 -49142922 - MER44D DNA MER2_type 0 609 1 438 174 87 0 chr11 101641107 101641200 -49142353 + AluJb SINE Alu 208 306 0 184 348 67 11 chr11 101641560 101641649 -49141904 + L2 LINE L2 3180 3273 -40 182 235 0 0 chr11 101642030 101642064 -49141489 - MIR SINE MIR -187 75 42 1404 186 51 51 chr11 101643834 101644146 -49139407 + AluJb SINE Alu 1 312 0 189 271 104 0 chr11 101645627 101645675 -49137878 - L2 LINE L2 -3 3310 3258 822 223 83 25 chr11 101645780 101646022 -49137531 - L2 LINE L2 -660 2654 2399 25 31 0 0 chr11 101647091 101647123 -49136430 + AT_rich Low_complexity Low_complexity 1 32 0 809 176 0 15 chr11 101647124 101647255 -49136298 - FLAM_C SINE Alu -4 129 1 1855 135 14 20 chr11 101649176 101649472 -49134081 - AluSg SINE Alu -16 294 1 343 256 103 8 chr11 101651012 101651129 -49132424 - L2 LINE L2 0 3313 3186 568 317 72 22 chr11 101651340 101651659 -49131894 + L1MC4a LINE L1 5574 5908 -1900 324 206 15 0 chr11 101651846 101651914 -49131639 + Tigger2 DNA MER2_type 1 69 -2649 * 2439 125 45 67 chr11 101651912 101652361 -49131192 + Tigger2 DNA MER2_type 2280 2718 0 1493 196 119 31 chr11 101652432 101652871 -49130682 + MLT2D LTR ERVL 1 464 0 1532 174 33 4 chr11 101653522 101653797 -49129756 + MSTB1 LTR MaLR 146 428 -4 238 260 39 52 chr11 101653876 101653953 -49129600 - MIR SINE MIR -31 231 156 2487 66 0 10 chr11 101654066 101654371 -49129182 + AluY SINE Alu 1 302 -9 1988 216 40 26 chr11 101654409 101654862 -49128691 - MLT1C LTR MaLR -8 459 1 21 0 0 0 chr11 101656244 101656265 -49127288 + AT_rich Low_complexity Low_complexity 1 21 0 313 277 226 0 chr11 101656392 101656529 -49127024 - MIR SINE MIR -24 238 71 503 250 236 0 chr11 101656554 101656702 -49126851 - MER5A DNA MER1_type 0 189 7 545 303 113 12 chr11 101657315 101657635 -49125918 + L1MC4a LINE L1 5568 5919 -1889 30 0 0 0 chr11 101657655 101657685 -49125868 + AT_rich Low_complexity Low_complexity 1 30 0 628 230 62 6 chr11 101657714 101657875 -49125678 - MLT1A1 LTR MaLR 0 365 196 3130 164 34 34 chr11 101658491 101658764 -49124789 + MER68 LTR ERV1 1 273 -289 2290 123 0 0 chr11 101658764 101659073 -49124480 - AluSx SINE Alu -3 309 1 3130 164 34 34 chr11 101659073 101659361 -49124192 + MER68 LTR ERV1 272 562 0 1948 155 7 13 chr11 101659506 101659815 -49123738 - AluJo SINE Alu -5 307 1 664 246 48 11 chr11 101660204 101660391 -49123162 - MER63A DNA MER1_type -4 206 13 2472 151 30 37 chr11 101660730 101661167 -49122386 - Tigger2a DNA MER2_type 0 434 1 198 0 0 0 chr11 101661311 101661333 -49122220 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 315 193 0 0 chr11 101661855 101661943 -49121610 + T-rich Low_complexity Low_complexity 1 88 0 189 0 0 0 chr11 101662308 101662329 -49121224 + (TG)n Simple_repeat Simple_repeat 2 22 0 438 254 54 8 chr11 101664250 101664380 -49119173 + MIR3 SINE MIR 50 185 -23 2309 107 0 3 chr11 101665538 101665836 -49117717 + AluSg SINE Alu 1 297 -13 190 231 0 0 chr11 101668683 101668722 -49114831 + L2 LINE L2 3267 3305 -8 186 43 0 0 chr11 101669139 101669162 -49114391 + (CAA)n Simple_repeat Simple_repeat 2 24 0 216 182 0 0 chr11 101671876 101671920 -49111633 + (CA)n Simple_repeat Simple_repeat 2 45 0 196 319 96 52 chr11 101673159 101673523 -49110030 + L2 LINE L2 1933 2312 -1002 181 363 22 0 chr11 101673917 101674008 -49109545 + L2 LINE L2 2658 2750 -564 327 250 9 28 chr11 101674038 101674146 -49109407 + L2 LINE L2 2860 2965 -307 379 270 24 16 chr11 101674560 101674686 -49108867 + MIR SINE MIR 20 146 -116 1090 242 9 55 chr11 101675859 101676189 -49107364 - MER46C DNA MER2_type -22 316 2 360 262 37 9 chr11 101677103 101677210 -49106343 - L1ME4a LINE L1 -24 6097 5988 296 224 129 60 chr11 101678296 101678412 -49105141 - HAL1 LINE L1 -1 2506 2383 910 257 81 27 chr11 101678421 101679113 -49104440 - HAL1 LINE L1 -148 2359 1580 1245 241 75 24 chr11 101679124 101679588 -49103965 - HAL1 LINE L1 -988 1519 1032 207 0 0 0 chr11 101679588 101679611 -49103942 + (T)n Simple_repeat Simple_repeat 1 23 0 195 377 8 23 chr11 101680178 101680308 -49103245 - MIR SINE MIR -59 149 22 4110 149 21 40 chr11 101680425 101680502 -49103051 - MER50 LTR ERV1 -23 711 634 2589 49 7 7 chr11 101680502 101680808 -49102745 + AluY SINE Alu 1 306 -5 4110 149 21 40 chr11 101680808 101681455 -49102098 - MER50 LTR ERV1 -100 634 1 284 192 27 55 chr11 101682921 101682994 -49100559 + MIR SINE MIR 34 104 -158 541 199 92 0 chr11 101683085 101683226 -49100327 + MIR SINE MIR 109 262 0 1429 319 106 17 chr11 101683471 101684058 -49099495 - MER115 DNA AcHobo -47 646 8 317 322 149 12 chr11 101684064 101684393 -49099160 - L2 LINE L2 -19 3294 2921 2303 70 3 7 chr11 101684438 101684736 -49098817 + AluY SINE Alu 1 297 -14 416 259 166 41 chr11 101684812 101685132 -49098421 - L2 LINE L2 -525 2789 2430 451 253 26 67 chr11 101685424 101685722 -49097831 + L2 LINE L2 2668 3006 -307 379 300 17 8 chr11 101685742 101685862 -49097691 + L2 LINE L2 3188 3308 -5 2495 135 97 66 chr11 101685893 101686410 -49097143 + LTR64 LTR ERVK 1 533 -25 2322 100 7 0 chr11 101686411 101686710 -49096843 + AluSx SINE Alu 2 302 -10 2539 62 0 3 chr11 101686710 101687016 -49096537 + AluY SINE Alu 1 305 -6 1866 239 26 7 chr11 101687041 101687459 -49096094 + LTR31 LTR ERV1 194 619 0 386 322 128 20 chr11 101687459 101687857 -49095696 - L2 LINE L2 -1558 1756 1316 423 292 132 67 chr11 101689101 101689443 -49094110 + L2 LINE L2 2909 3272 0 271 304 0 0 chr11 101689714 101689793 -49093760 - MIR SINE MIR -7 255 177 194 298 95 0 chr11 101692391 101692475 -49091078 - L2 LINE L2 -2 3270 3179 2068 142 10 0 chr11 101692727 101693022 -49090531 + AluSx SINE Alu 1 298 -14 1080 123 4 138 chr11 101700667 101700920 -49082633 - MER20 DNA MER1_type 0 219 1 433 286 22 51 chr11 101701184 101701362 -49082191 + L2 LINE L2 3140 3312 -1 237 329 35 42 chr11 101702722 101702865 -49080688 - MIR3 SINE MIR -31 177 36 252 327 38 38 chr11 101703023 101703182 -49080371 + MER117 DNA MER1_type 6 164 -33 338 268 61 0 chr11 101703185 101703267 -49080286 + L2 LINE L2 3225 3311 -2 3291 178 94 20 chr11 101703718 101704449 -49079104 - LTR48 LTR ERV1 0 787 3 2360 84 3 3 chr11 101705742 101706039 -49077514 + AluY SINE Alu 1 297 -14 416 259 166 41 chr11 101706115 101706435 -49077118 - L2 LINE L2 -525 2789 2430 451 253 26 67 chr11 101706727 101707025 -49076528 + L2 LINE L2 2668 3006 -307 379 300 17 8 chr11 101707045 101707165 -49076388 + L2 LINE L2 3188 3308 -5 2495 135 97 66 chr11 101707196 101707713 -49075840 + LTR64 LTR ERVK 1 533 -25 2322 100 7 0 chr11 101707714 101708013 -49075540 + AluSx SINE Alu 2 302 -10 2539 62 0 3 chr11 101708013 101708319 -49075234 + AluY SINE Alu 1 305 -6 1866 239 26 7 chr11 101708344 101708762 -49074791 + LTR31 LTR ERV1 194 619 0 386 322 128 20 chr11 101708762 101709160 -49074393 - L2 LINE L2 -1558 1756 1316 378 274 20 98 chr11 101709701 101709905 -49073648 + MER21B LTR ERV1 1 188 -675 1977 109 0 4 chr11 101712914 101713179 -49070374 + AluSg SINE Alu 41 304 -6 377 259 114 70 chr11 101713192 101713398 -49070155 + MER102b DNA MER1_type 77 295 -1133 2814 92 0 18 chr11 101713398 101713780 -49069773 + THE1C LTR MaLR 1 375 0 377 259 114 70 chr11 101713780 101713801 -49069752 + MER102b DNA MER1_type 295 314 -27 1958 182 107 21 chr11 101713844 101714312 -49069241 - L1MD2 LINE L1 -10 6349 5842 1610 180 78 20 chr11 101714438 101714783 -49068770 + MLT1A1 LTR MaLR 1 365 0 1660 89 0 0 chr11 101715236 101715450 -49068103 + L1PA8 LINE L1 5946 6159 -13 2300 87 3 0 chr11 101715866 101716155 -49067398 + AluY SINE Alu 1 290 -21 195 289 39 0 chr11 101716436 101716488 -49067065 - L2 LINE L2 -90 3182 3129 283 257 225 28 chr11 101716805 101717089 -49066464 - MLT1J2 LTR MaLR -44 406 67 2352 112 0 0 chr11 101717267 101717579 -49065974 + AluSx SINE Alu 1 312 0 272 243 43 93 chr11 101719230 101719370 -49064183 + MIR SINE MIR 85 217 -45 456 237 92 13 chr11 101719579 101719731 -49063822 - MIR SINE MIR -37 225 62 330 200 71 0 chr11 101719809 101719879 -49063674 + MER5A DNA MER1_type 1 75 -114 968 191 11 16 chr11 101719895 101720084 -49063469 - MER5A DNA MER1_type 0 189 2 1259 233 111 8 chr11 101720089 101720484 -49063069 - Charlie4a DNA MER1_type -1 507 72 1648 209 126 60 chr11 101720499 101720682 -49062871 + MLT1F1 LTR MaLR 1 171 -396 1586 173 52 46 chr11 101720682 101721070 -49062483 - MLT1B LTR MaLR 0 390 1 1648 209 126 60 chr11 101721070 101721409 -49062144 + MLT1F1 LTR MaLR 171 567 0 272 175 105 0 chr11 101721769 101721826 -49061727 - MIR SINE MIR -84 124 62 206 242 65 128 chr11 101722479 101722619 -49060934 - MER5A DNA MER1_type -22 167 25 191 288 22 115 chr11 101723468 101723607 -49059946 + L2 LINE L2 2934 3059 -213 208 188 83 0 chr11 101723702 101723750 -49059803 + L2 LINE L2 3221 3272 0 548 277 60 6 chr11 101724009 101724175 -49059378 + MER45A DNA AcHobo 3 177 -1 2318 92 0 0 chr11 101724650 101724956 -49058597 + AluSx SINE Alu 1 306 0 313 292 66 90 chr11 101725351 101725639 -49057914 - L1MC4a LINE L1 -1872 5936 5656 285 353 137 27 chr11 101725828 101726230 -49057323 - L2 LINE L2 -16 3256 2811 361 279 38 38 chr11 101727031 101727189 -49056364 + L1ME2 LINE L1 5998 6155 -9 300 260 21 10 chr11 101728030 101728126 -49055427 - MIR SINE MIR -80 128 32 222 310 60 10 chr11 101728220 101728320 -49055233 - L3b LINE CR1 -102 1481 1377 1671 241 28 86 chr11 101731031 101731715 -49051838 + L2 LINE L2 2120 2763 -551 214 287 122 9 chr11 101731726 101731841 -49051712 + L2 LINE L2 3186 3313 0 1469 204 3 17 chr11 101732629 101732918 -49050635 + AluJo SINE Alu 6 290 -22 298 283 19 19 chr11 101734038 101734144 -49049409 - MIR SINE MIR -136 126 21 1253 157 13 0 chr11 101736025 101736254 -49047299 + L1MA7 LINE L1 6056 6287 -4 207 320 29 0 chr11 101737368 101737471 -49046082 + L3b LINE CR1 1295 1400 -183 1041 170 36 0 chr11 101737904 101738098 -49045455 + MER20 DNA MER1_type 5 205 -14 183 42 0 0 chr11 101741026 101741050 -49042503 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 785 275 28 0 chr11 101742519 101742737 -49040816 + MER58A DNA MER1_type 1 224 0 1794 167 0 31 chr11 101743140 101743458 -49040095 + AluJo SINE Alu 5 312 0 563 281 15 36 chr11 101743515 101743711 -49039842 - MIR SINE MIR -51 211 20 235 276 0 26 chr11 101745363 101745439 -49038114 - L2 LINE L2 -2 3311 3238 204 357 91 26 chr11 101745616 101745955 -49037598 - L2 LINE L2 -337 2977 2617 220 269 90 0 chr11 101746839 101746906 -49036647 - L2 LINE L2 -46 3226 3154 2278 156 3 0 chr11 101747697 101748043 -49035510 + MER7A DNA MER2_type 2 346 0 360 279 197 0 chr11 101748108 101748255 -49035298 - MER5A DNA MER1_type -7 182 7 219 189 0 0 chr11 101748465 101748518 -49035035 + (CA)n Simple_repeat Simple_repeat 2 54 0 333 303 46 56 chr11 101749584 101749779 -49033774 - MIR SINE MIR -56 206 14 444 308 173 13 chr11 101749799 101750117 -49033436 - L3 LINE CR1 -18 1559 1191 300 352 37 0 chr11 101750306 101750414 -49033139 - L2 LINE L2 0 3272 3161 353 298 63 38 chr11 101751889 101752047 -49031506 - MIR SINE MIR -54 208 47 7287 177 156 41 chr11 101753494 101755067 -49028486 - MER52A LTR ERV1 0 1755 1 187 252 147 101 chr11 101755837 101756095 -49027458 + L2 LINE L2 3000 3269 -3 953 213 0 0 chr11 101756526 101756690 -49026863 - FRAM SINE Alu -12 164 1 225 135 16 6 chr11 101760464 101760708 -49022845 + AluSq SINE Alu 1 298 -2 432 255 57 21 chr11 101760781 101760922 -49022631 - MIR SINE MIR -111 151 6 261 240 40 24 chr11 101763370 101763463 -49020090 - MIR SINE MIR -67 141 68 687 182 41 0 chr11 101763662 101763783 -49019770 - FLAM_A SINE Alu -4 129 4 2157 123 0 3 chr11 101765080 101765382 -49018171 + AluSc SINE Alu 1 301 -8 182 125 0 25 chr11 101765960 101766000 -49017553 + (TTTCC)n Simple_repeat Simple_repeat 5 43 0 392 267 33 40 chr11 101766745 101766895 -49016658 + L2 LINE L2 3146 3294 -19 22 0 0 0 chr11 101769325 101769347 -49014206 + AT_rich Low_complexity Low_complexity 1 22 0 532 229 14 130 chr11 101771341 101771564 -49011989 - MIR SINE MIR -2 260 64 263 167 0 0 chr11 101771569 101771611 -49011942 + Alu SINE Alu 1 42 -260 609 194 0 0 chr11 101771611 101771709 -49011844 + AluJo/FRAM SINE Alu 202 299 -13 519 175 233 0 chr11 101771873 101771993 -49011560 + MER5A DNA MER1_type 9 156 -33 241 262 0 16 chr11 101772076 101772137 -49011416 - MER5A DNA MER1_type -5 184 125 310 243 39 48 chr11 101772289 101772392 -49011161 + MER5A DNA MER1_type 88 189 0 187 269 21 86 chr11 101772315 101772408 -49011145 - MER5A DNA MER1_type -102 87 1 * 202 321 119 18 chr11 101773702 101773811 -49009742 - MIR SINE MIR -91 171 52 583 269 27 13 chr11 101774451 101774600 -49008953 + MIR SINE MIR 66 216 -46 2217 95 7 0 chr11 101775096 101775379 -49008174 - AluSp SINE Alu -28 285 1 374 226 105 57 chr11 101775902 101776026 -49007527 + MIR SINE MIR 8 137 -125 181 205 115 90 chr11 101776040 101776088 -49007465 + L2 LINE L2 3176 3228 -44 670 201 113 41 chr11 101776088 101776282 -49007271 + MER63A DNA MER1_type 1 208 -2 181 205 115 90 chr11 101776282 101776311 -49007242 + L2 LINE L2 3228 3255 -17 847 271 104 64 chr11 101777562 101778159 -49005394 + HAL1 LINE L1 58 678 -1829 333 296 38 61 chr11 101778183 101778315 -49005238 + HAL1 LINE L1 763 891 -1616 283 91 91 0 chr11 101778316 101778360 -49005193 - MLT2C2 LTR ERVL 0 520 473 899 136 0 0 chr11 101778361 101778493 -49005060 - Tigger5 DNA MER2_type 0 2323 2192 491 240 10 0 chr11 101778483 101778579 -49004974 - Tigger5 DNA MER2_type -2226 97 1 * 1448 146 128 144 chr11 101778606 101779037 -49004516 - MLT2C2 LTR ERVL -40 424 1 486 177 92 37 chr11 101779037 101779201 -49004352 + HAL1 LINE L1 888 1060 -1447 21 36 0 0 chr11 101779343 101779371 -49004182 + GC_rich Low_complexity Low_complexity 1 28 0 2826 225 69 25 chr11 101779475 101779844 -49003709 + MER21B LTR ERV1 89 440 -423 2159 81 3 3 chr11 101779844 101780180 -49003373 - AluY SINE Alu 0 336 1 2826 225 69 25 chr11 101780180 101780494 -49003059 + MER21B LTR ERV1 440 803 -60 945 190 102 33 chr11 101780756 101781093 -49002460 + LTR64 LTR ERVK 147 550 -8 271 269 99 64 chr11 101781448 101781589 -49001964 + MIR SINE MIR 9 154 -108 630 264 132 5 chr11 101781631 101781828 -49001725 - MIR SINE MIR -28 234 13 252 317 161 21 chr11 101781856 101782042 -49001511 - MIR SINE MIR -31 231 20 277 282 136 27 chr11 101782161 101782271 -49001282 - MIR SINE MIR -67 141 19 292 344 46 8 chr11 101782864 101782995 -49000558 + MIR3 SINE MIR 44 179 -29 345 228 198 10 chr11 101783059 101783160 -49000393 + L2 LINE L2 3194 3313 0 198 133 17 50 chr11 101784306 101784366 -48999187 + GA-rich Low_complexity Low_complexity 1 58 0 1070 218 172 43 chr11 101784393 101784857 -48998696 + MLT1F LTR MaLR 19 542 0 364 241 233 0 chr11 101784857 101784990 -48998563 + MLT1F-int LTR MaLR 1 164 -1207 8334 29 1 1 chr11 101785092 101785989 -48997564 - MER11D LTR ERVK 0 897 1 8243 42 0 0 chr11 101785989 101786959 -48996594 - HERVK11D LTR ERVK 0 7752 6783 * 10535 39 4 1 chr11 101786949 101788169 -48995384 - HERVK11D LTR ERVK -1161 6591 5368 * 15153 28 0 5 chr11 101788159 101789900 -48993653 - HERVK11D LTR ERVK -2948 4804 3073 6848 63 6 1 chr11 101789900 101790758 -48992795 - HERVK11D LTR ERVK -6890 862 1 8144 30 3 5 chr11 101790758 101791656 -48991897 - MER11D LTR ERVK 0 897 1 264 303 92 0 chr11 101791733 101791809 -48991744 - L2 LINE L2 -27 3245 3163 381 162 0 0 chr11 101791993 101792061 -48991492 + CT-rich Low_complexity Low_complexity 1 68 0 969 84 22 22 chr11 101792061 101792239 -48991314 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1167 151 0 58 chr11 101792242 101792448 -48991105 - AluJo SINE Alu -33 279 86 247 307 70 9 chr11 101792618 101792732 -48990821 + MIR3 SINE MIR 4 124 -84 756 209 0 0 chr11 101792758 101792892 -48990661 + FLAM_C SINE Alu 2 135 -8 1406 135 25 5 chr11 101793233 101793596 -48989957 - LTR23 LTR ERV1 0 437 1 376 288 102 58 chr11 101793682 101794082 -48989471 + L1ME4a LINE L1 5474 5891 -230 426 256 26 51 chr11 101794116 101794233 -48989320 - L2 LINE L2 -16 3297 3184 1400 188 13 0 chr11 101794543 101794782 -48988771 - Tigger2 DNA MER2_type -4 2714 2473 765 189 0 0 chr11 101794782 101794914 -48988639 + FLAM_C SINE Alu 1 132 -11 1259 107 15 10 chr11 101794914 101795110 -48988443 - Tigger2 DNA MER2_type -249 2469 2273 458 147 15 0 chr11 101795100 101795168 -48988385 - Tigger2 DNA MER2_type -2649 69 1 * 423 241 153 51 chr11 101795289 101795583 -48987970 - MER102a DNA MER1_type -2 328 5 2839 103 28 107 chr11 101795963 101796131 -48987422 - L1MA4 LINE L1 -5 6295 6115 988 195 43 0 chr11 101796131 101796295 -48987258 - FAM SINE Alu -2 173 3 2839 103 28 107 chr11 101796295 101796659 -48986894 - L1MA4 LINE L1 -185 6115 5805 3004 123 2 67 chr11 101796661 101797361 -48986192 + L1MA4 LINE L1 5142 5787 -513 284 310 145 7 chr11 101797380 101797525 -48986028 + MIR SINE MIR 48 212 -50 200 273 15 0 chr11 101797663 101797729 -48985824 - L2 LINE L2 -653 2661 2595 279 254 42 68 chr11 101797878 101797996 -48985557 - L2 LINE L2 -16 3297 3183 886 195 30 88 chr11 101798140 101798437 -48985116 - L1MC5 LINE L1 -30 7931 7652 1734 143 17 27 chr11 101798439 101798733 -48984820 - AluJo SINE Alu 0 312 22 3696 146 12 10 chr11 101799001 101799604 -48983949 - L1MC1 LINE L1 -191 6142 5539 525 261 185 49 chr11 101800465 101800639 -48982914 - L2 LINE L2 -421 2893 2744 2167 109 14 0 chr11 101800639 101800932 -48982621 + AluSx SINE Alu 1 297 -15 525 261 185 49 chr11 101800932 101801082 -48982471 - L2 LINE L2 -570 2744 2525 814 173 0 8 chr11 101801459 101801586 -48981967 - FLAM_C SINE Alu -17 126 1 240 250 52 52 chr11 101801810 101801906 -48981647 - L2 LINE L2 -1 3271 3176 216 86 0 0 chr11 101802131 101802166 -48981387 + (T)n Simple_repeat Simple_repeat 1 35 0 269 119 0 0 chr11 101802184 101802226 -48981327 - L1PA8 LINE L1 -3 6169 6128 912 122 8 0 chr11 101802401 101802524 -48981029 - AluJb SINE Alu -188 124 1 399 174 31 41 chr11 101803437 101803535 -48980018 - Charlie8 DNA MER1_type -2255 162 66 1774 172 20 7 chr11 101804877 101805174 -48978379 - AluSx SINE Alu -11 301 1 215 288 127 51 chr11 101805232 101805350 -48978203 + MIR SINE MIR 19 145 -63 317 118 20 0 chr11 101805355 101805406 -48978147 - L1M1 LINE L1 -693 5610 5559 * 1161 193 30 47 chr11 101805405 101805711 -48977842 - L1MA4A LINE L1 -710 5593 5287 4435 110 22 23 chr11 101805712 101806096 -48977457 + L1MA4A LINE L1 5617 6001 -302 192 40 0 0 chr11 101806096 101806121 -48977432 + (TG)n Simple_repeat Simple_repeat 1 25 0 4435 110 22 23 chr11 101806121 101806420 -48977133 + L1MA4A LINE L1 6001 6299 -4 544 206 206 7 chr11 101806496 101806651 -48976902 - MIR SINE MIR 0 262 77 780 169 29 169 chr11 101806681 101806924 -48976629 + MER21B LTR ERV1 13 221 -642 338 0 24 0 chr11 101807071 101807113 -48976440 + (CA)n Simple_repeat Simple_repeat 1 43 0 221 204 19 0 chr11 101807186 101807240 -48976313 + (TA)n Simple_repeat Simple_repeat 2 56 0 392 308 10 0 chr11 101807874 101807978 -48975575 + MIR SINE MIR 27 131 -131 360 0 0 0 chr11 101808202 101808242 -48975311 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1119 188 38 0 chr11 101808244 101808457 -48975096 - AluJb SINE Alu -32 280 60 1897 174 9 0 chr11 101808586 101808907 -48974646 - MER95 LTR ERV -107 324 1 367 260 20 0 chr11 101809053 101809188 -48974365 - MER51-int LTR ERV1 -133 7130 6558 4657 105 10 39 chr11 101809538 101809895 -48973658 - L1PA12 LINE L1 0 6168 5839 2322 92 6 13 chr11 101809895 101810210 -48973343 - AluSq SINE Alu 0 313 1 4657 105 10 39 chr11 101810210 101810549 -48973004 - L1PA12 LINE L1 -329 5839 5492 2788 127 54 12 chr11 101811131 101811558 -48971995 - MER65A LTR ERV1 0 445 1 7422 64 8 4 chr11 101813294 101814518 -48969035 - L1PA7 LINE L1 -1 6153 4927 1107 173 19 0 chr11 101815070 101815284 -48968269 - L1MA4 LINE L1 -13 6287 6070 1391 175 37 46 chr11 101815507 101815833 -48967720 + MER33 DNA MER1_type 1 323 -1 27 0 0 0 chr11 101816825 101816852 -48966701 + AT_rich Low_complexity Low_complexity 1 27 0 872 255 71 11 chr11 101817143 101817547 -48966006 + L1MC4 LINE L1 7102 7495 -547 976 204 46 89 chr11 101817547 101817646 -48965907 - MER39 LTR ERV1 0 637 535 2028 120 16 67 chr11 101817646 101818020 -48965533 - THE1A LTR MaLR 0 355 1 11748 94 3 1 chr11 101818020 101819596 -48963957 - THE1A-int LTR MaLR 0 1580 1 2588 90 6 11 chr11 101819596 101819953 -48963600 - THE1A LTR MaLR 0 355 1 976 204 46 89 chr11 101819953 101820320 -48963233 - MER39 LTR ERV1 -99 538 109 401 181 124 38 chr11 101820319 101820424 -48963129 - MER39 LTR ERV1 -573 134 21 * 923 170 81 14 chr11 101820442 101820665 -48962888 + MER33 DNA MER1_type 16 253 -71 2789 249 68 21 chr11 101821915 101823323 -48960230 + L1ME3 LINE L1 4107 5576 -588 849 215 6 11 chr11 101823763 101823940 -48959613 + MER41D LTR ERV1 382 557 0 315 247 0 0 chr11 101823941 101824026 -48959527 + L1ME3 LINE L1 5678 5762 -400 211 343 0 0 chr11 101824033 101824103 -48959450 + (TATATG)n Simple_repeat Simple_repeat 5 74 0 890 215 14 14 chr11 101824109 101824323 -48959230 + L1ME3 LINE L1 5782 5995 -167 542 200 9 0 chr11 101824447 101824562 -48958991 + L1ME3 LINE L1 6039 6154 -8 2432 148 68 25 chr11 101824989 101825501 -48958052 - MER34C LTR ERV1 -4 581 48 267 294 22 0 chr11 101825518 101825610 -48957943 + MLT1L LTR MaLR 157 250 -365 3490 130 103 31 chr11 101825611 101826289 -48957264 + LTR8A LTR ERV1 1 727 0 198 0 0 0 chr11 101826302 101826324 -48957229 + (TG)n Simple_repeat Simple_repeat 1 22 0 291 295 134 7 chr11 101826602 101826751 -48956802 + L2 LINE L2 2915 3082 -190 1121 207 24 64 chr11 101826760 101827089 -48956464 + LTR39 LTR ERV1 1 316 -467 765 217 22 17 chr11 101827156 101827336 -48956217 + LTR39 LTR ERV1 603 783 0 2251 95 6 38 chr11 101827459 101827774 -48955779 + AluSx SINE Alu 1 305 -7 1729 168 72 17 chr11 101828109 101828454 -48955099 + MLT1A1 LTR MaLR 1 364 -1 184 264 0 75 chr11 101829739 101829792 -48953761 + MIR SINE MIR 23 71 -137 2544 58 0 0 chr11 101830134 101830428 -48953125 + AluY SINE Alu 2 295 -16 702 280 51 42 chr11 101830556 101830892 -48952661 + L2 LINE L2 2085 2423 -891 1560 193 80 34 chr11 101831125 101831385 -48952168 - MER63B DNA MER1_type -626 436 148 2521 86 0 0 chr11 101831385 101831689 -48951864 - AluY SINE Alu -7 304 1 1560 193 80 34 chr11 101831689 101831843 -48951710 - MER63B DNA MER1_type -914 148 3 219 150 0 0 chr11 101831970 101832010 -48951543 + (TG)n Simple_repeat Simple_repeat 2 41 0 212 333 68 38 chr11 101832012 101832144 -48951409 - L2 LINE L2 -463 2851 2716 3131 113 80 77 chr11 101832986 101833598 -48949955 - LTR18B LTR ERVL 0 614 1 2458 144 37 16 chr11 101833867 101834303 -48949250 + MER65A LTR ERV1 1 445 0 264 367 20 25 chr11 101834893 101835089 -48948464 + L2 LINE L2 2838 3032 -240 541 219 34 25 chr11 101835189 101835308 -48948245 - L2 LINE L2 -2 3311 3192 188 86 29 0 chr11 101835335 101835370 -48948183 + (CAA)n Simple_repeat Simple_repeat 2 37 0 221 300 23 62 chr11 101835482 101835612 -48947941 - MIR SINE MIR -64 144 20 201 247 111 0 chr11 101836111 101836192 -48947361 + L2 LINE L2 2920 3009 -263 1147 166 68 0 chr11 101836308 101836513 -48947040 - MER20 DNA MER1_type 0 219 1 541 241 185 31 chr11 101836567 101836762 -48946791 - MIR SINE MIR -30 232 8 314 316 23 38 chr11 101836896 101837029 -48946524 - LTR50 LTR ERVL -274 521 391 685 186 81 57 chr11 101837047 101837295 -48946258 + LTR50 LTR ERVL 542 795 0 494 302 73 66 chr11 101838590 101838808 -48944745 + MLT1J LTR MaLR 1 216 -295 2255 89 13 3 chr11 101838808 101839110 -48944443 - AluSc SINE Alu -4 305 1 494 302 73 66 chr11 101839110 101839331 -48944222 + MLT1J LTR MaLR 216 443 -68 349 232 0 0 chr11 101840598 101840667 -48942886 - MIR SINE MIR -34 228 160 248 231 15 0 chr11 101841109 101841174 -48942379 + CT-rich Low_complexity Low_complexity 2 67 0 207 286 107 114 chr11 101841342 101841482 -48942071 - MIR SINE MIR -109 153 15 822 204 86 27 chr11 101841567 101841787 -48941766 - MIR SINE MIR -26 236 4 224 255 92 31 chr11 101841983 101842081 -48941472 + MIR SINE MIR 159 262 0 338 355 42 32 chr11 101842094 101842283 -48941270 + MIR SINE MIR 63 253 -9 2012 179 78 11 chr11 101842393 101842829 -48940724 - MLT1C LTR MaLR -2 465 1 1493 172 21 101 chr11 101842964 101843095 -48940458 + AluJo SINE Alu 1 141 -171 2068 149 0 16 chr11 101843095 101843411 -48940142 - AluJb SINE Alu -1 311 1 1493 172 21 101 chr11 101843411 101843605 -48939948 + AluJo SINE Alu 141 300 -12 1431 189 25 69 chr11 101844109 101844469 -48939084 + MLT1A1 LTR MaLR 11 354 -11 284 333 73 0 chr11 101845160 101845283 -48938270 + MIR SINE MIR 49 180 -82 500 185 4 26 chr11 101845286 101845512 -48938041 + L1MB8 LINE L1 4967 5288 -858 2503 147 34 36 chr11 101845513 101845968 -48937585 + L1MB8 LINE L1 5654 6110 -68 2196 106 0 3 chr11 101845968 101846290 -48937263 - AluSg SINE Alu 0 321 1 2503 147 34 36 chr11 101846290 101846358 -48937195 + L1MB8 LINE L1 6110 6177 -1 1186 268 134 29 chr11 101846449 101847521 -48936032 - L1MEd LINE L1 -2949 3180 2022 347 298 12 0 chr11 101847713 101847797 -48935756 + polypyrimidine Low_complexity Low_complexity 4 88 0 521 288 69 47 chr11 101847863 101848682 -48934871 - L1MEd LINE L1 -4581 1729 833 375 23 0 0 chr11 101848707 101848751 -48934802 + (CA)n Simple_repeat Simple_repeat 1 44 0 243 275 17 58 chr11 101849404 101849524 -48934029 - L1MEd LINE L1 -5953 166 52 372 337 44 68 chr11 101849576 101849941 -48933612 - L1MEd LINE L1 -5256 863 508 225 0 0 0 chr11 101850142 101850167 -48933386 + (TAA)n Simple_repeat Simple_repeat 2 26 0 214 228 109 33 chr11 101850168 101850260 -48933293 - MIR SINE MIR -8 254 156 22 70 0 0 chr11 101850629 101850672 -48932881 + AT_rich Low_complexity Low_complexity 1 43 0 1608 192 85 8 chr11 101850951 101851315 -48932238 + MSTD LTR MaLR 1 392 -4 28 29 0 0 chr11 101851480 101851515 -48932038 + AT_rich Low_complexity Low_complexity 1 35 0 302 277 0 46 chr11 101851677 101851807 -48931746 + MER53 DNA DNA 4 127 -62 216 149 43 0 chr11 101851834 101851881 -48931672 + CT-rich Low_complexity Low_complexity 1 49 0 321 26 0 0 chr11 101852506 101852544 -48931009 + (CA)n Simple_repeat Simple_repeat 1 38 0 296 278 36 52 chr11 101853528 101853722 -48929831 + MLT1L LTR MaLR 411 601 -14 233 297 0 27 chr11 101853778 101853852 -48929701 - MER91B DNA MER1_type -118 72 1 1089 292 80 15 chr11 101853988 101854487 -48929066 - L2 LINE L2 0 3313 2772 843 214 63 59 chr11 101854488 101854602 -48928951 + MER8 DNA MER2_type 1 113 -126 2015 132 4 0 chr11 101854602 101854910 -48928643 + AluSx SINE Alu 1 309 0 843 214 63 59 chr11 101854910 101855032 -48928521 + MER8 DNA MER2_type 113 239 0 192 77 0 0 chr11 101855034 101855060 -48928493 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 5438 98 19 12 chr11 101855060 101856417 -48927136 - L1PA8 LINE L1 -24 6148 4773 1742 201 61 27 chr11 101856417 101856859 -48926694 - LTR2B LTR ERV1 0 490 34 37678 58 6 1 chr11 101856880 101861788 -48921765 - Harlequin LTR ERV1 0 6896 1966 7590 66 15 21 chr11 101861782 101863314 -48920239 - Harlequin LTR ERV1 -5312 1584 1 * 1521 189 93 35 chr11 101863314 101863752 -48919801 - LTR2B LTR ERV1 0 490 1 527 58 0 0 chr11 101863752 101863821 -48919732 - L1P LINE L1 -1370 4776 4708 * 5783 108 16 2 chr11 101863820 101864731 -48918822 + L1P LINE L1 3787 4710 -1436 251 269 30 0 chr11 101864743 101864810 -48918743 - L2 LINE L2 -548 2766 2698 62 94 0 0 chr11 101865076 101865257 -48918296 + AT_rich Low_complexity Low_complexity 1 181 0 622 277 62 4 chr11 101865265 101865507 -48918046 - L2 LINE L2 -591 2723 2468 390 242 32 16 chr11 101866494 101866618 -48916935 - MIR SINE MIR -8 254 129 396 280 51 0 chr11 101866689 101866807 -48916746 - MIR SINE MIR -94 168 45 2427 193 92 61 chr11 101866953 101867703 -48915850 - MER21B LTR ERV1 -70 793 21 1053 152 66 5 chr11 101867841 101868038 -48915515 - MER2 DNA MER2_type -136 209 1 4134 126 64 9 chr11 101868051 101868725 -48914828 - MER50 LTR ERV1 -23 711 1 2314 201 26 4 chr11 101868726 101869224 -48914329 - L1MB8 LINE L1 -24 6154 5646 197 236 28 56 chr11 101869325 101869397 -48914156 - MIR SINE MIR -69 193 124 2090 119 46 0 chr11 101869540 101869868 -48913685 + MER61A LTR ERV1 1 343 0 1523 151 34 73 chr11 101869869 101870227 -48913326 + MER4A LTR ERV1 1 344 -320 848 215 57 48 chr11 101870226 101870554 -48912999 + MER4C LTR ERV1 276 465 0 * 985 189 50 128 chr11 101871105 101871481 -48912072 - MLT1A1 LTR MaLR 0 365 19 1515 197 41 3 chr11 101871513 101871807 -48911746 - AluJo SINE Alu -7 305 1 635 258 91 30 chr11 101872691 101872889 -48910664 + MIR SINE MIR 2 211 -51 520 145 4 32 chr11 101873052 101873155 -48910398 - MER5A DNA MER1_type -79 99 3 1373 158 88 81 chr11 101873312 101873722 -48909831 + MER110A LTR ERV1 1 413 -55 314 194 81 0 chr11 101874228 101874290 -48909263 + L2 LINE L2 3244 3310 -3 253 200 190 20 chr11 101875445 101875545 -48908008 + LTR37B LTR ERV1 5 121 -347 * 428 197 61 73 chr11 101875517 101875835 -48907718 + LTR37A LTR ERV1 57 426 0 2007 229 37 8 chr11 101876868 101877458 -48906095 - L1MDb LINE L1 -4988 1421 849 3974 212 56 25 chr11 101877633 101877951 -48905602 - L1M4 LINE L1 -1468 4678 4371 2837 102 51 9 chr11 101877951 101878402 -48905151 - L1MB3 LINE L1 -9 6174 5705 3974 212 56 25 chr11 101878402 101878613 -48904940 - L1M4 LINE L1 -1775 4371 4168 1505 189 44 46 chr11 101878613 101878979 -48904574 - MLT1A1 LTR MaLR 0 365 1 3974 212 56 25 chr11 101878979 101879528 -48904025 - L1M4 LINE L1 -1978 4168 3566 256 350 65 0 chr11 101879764 101879887 -48903666 - HAL1 LINE L1 -2363 144 14 213 231 0 0 chr11 101880163 101880202 -48903351 + (CATA)n Simple_repeat Simple_repeat 2 40 0 219 318 307 5 chr11 101880432 101880621 -48902932 - L3b LINE CR1 -27 1556 1311 421 310 96 5 chr11 101880821 101881008 -48902545 + MIR SINE MIR 7 210 -52 638 191 32 0 chr11 101882031 101882157 -48901396 - FLAM_C SINE Alu -3 130 1 2014 140 20 0 chr11 101882248 101882541 -48901012 - AluSx SINE Alu -13 299 1 2875 118 21 6 chr11 101882881 101883356 -48900197 - L1MA5A LINE L1 -3 6294 5813 804 243 111 33 chr11 101883794 101884173 -48899380 + MLT1J1 LTR MaLR 34 450 0 1736 155 27 14 chr11 101885385 101885682 -48897871 + MER1B DNA MER1_type 37 337 -2 186 43 0 0 chr11 101886698 101886721 -48896832 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 509 230 18 36 chr11 101887552 101887717 -48895836 - L2 LINE L2 0 3313 3152 3834 97 16 1 chr11 101888506 101889500 -48894053 + L1PA10 LINE L1 4783 5786 -382 43099 29 21 2 chr11 101889500 101895534 -48888019 + L1HS LINE L1 1 6155 0 346 109 0 0 chr11 101895545 101895600 -48887953 + L1PA10 LINE L1 5769 5823 -308 2935 49 8 3 chr11 101895602 101895968 -48887585 + L1PA10 LINE L1 5790 6157 -11 180 0 0 0 chr11 101896179 101896199 -48887354 + (TG)n Simple_repeat Simple_repeat 2 21 0 403 264 74 39 chr11 101896472 101896703 -48886850 - L1ME LINE L1 -316 5805 5567 27 0 0 0 chr11 101897803 101897830 -48885723 + AT_rich Low_complexity Low_complexity 1 27 0 1329 198 13 50 chr11 101899849 101900147 -48883406 - AluJo SINE Alu -25 287 1 460 272 88 0 chr11 101900602 101900738 -48882815 + MIR3 SINE MIR 30 177 -31 24 53 0 0 chr11 101901130 101901168 -48882385 + AT_rich Low_complexity Low_complexity 1 38 0 2988 205 74 8 chr11 101902071 101902828 -48880725 + L1MC4a LINE L1 7002 7808 0 938 241 83 8 chr11 101902836 101903101 -48880452 - HsTC2a DNA Tc2 -374 370 86 467 292 76 16 chr11 101906237 101906422 -48877131 - MIR SINE MIR -64 198 3 25 31 0 0 chr11 101906927 101906959 -48876594 + AT_rich Low_complexity Low_complexity 1 32 0 27 29 0 0 chr11 101908026 101908060 -48875493 + AT_rich Low_complexity Low_complexity 1 34 0 6722 148 17 37 chr11 101908439 101909278 -48874275 - L1PA13 LINE L1 -2 6161 5307 1987 111 0 0 chr11 101909278 101909540 -48874013 - AluSg SINE Alu -10 300 39 6722 148 17 37 chr11 101909540 101910788 -48872765 - L1PA13 LINE L1 -856 5307 4096 28 29 0 0 chr11 101911200 101911235 -48872318 + AT_rich Low_complexity Low_complexity 1 35 0 1544 212 3 0 chr11 101913717 101914000 -48869553 - AluJb SINE Alu -28 284 1 22 70 0 0 chr11 101914149 101914192 -48869361 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr11 101915062 101915086 -48868467 + AT_rich Low_complexity Low_complexity 1 24 0 2228 79 0 0 chr11 101915171 101915448 -48868105 - AluSq SINE Alu -15 298 22 3947 223 100 24 chr11 101915962 101916636 -48866917 - L1MC3 LINE L1 0 7785 6989 270 0 0 0 chr11 101916636 101916666 -48866887 + (TATG)n Simple_repeat Simple_repeat 2 31 0 3947 223 100 24 chr11 101916666 101917117 -48866436 - L1MC3 LINE L1 -796 6989 6574 497 268 7 29 chr11 101917275 101917413 -48866140 - MIR SINE MIR 0 262 128 229 322 101 24 chr11 101917629 101917837 -48865716 - L2 LINE L2 -767 2547 2324 404 144 35 73 chr11 101918413 101918543 -48865010 + L1MC5 LINE L1 7818 7941 -20 218 412 18 0 chr11 101918527 101918641 -48864912 - MIR3 SINE MIR -48 160 45 * 21 0 0 0 chr11 101918743 101918764 -48864789 + AT_rich Low_complexity Low_complexity 1 21 0 678 285 25 34 chr11 101921994 101922229 -48861324 - MIR SINE MIR 0 262 30 26 0 0 0 chr11 101922932 101922958 -48860595 + AT_rich Low_complexity Low_complexity 1 26 0 327 300 22 67 chr11 101923305 101923485 -48860068 - MIR SINE MIR -71 191 20 259 320 78 0 chr11 101924320 101924423 -48859130 + MIR SINE MIR 81 191 -71 1136 147 5 11 chr11 101925116 101925307 -48858246 - L1PB1 LINE L1 -3 6148 5959 * 9363 31 2 7 chr11 101925305 101927212 -48856341 - L1PA2 LINE L1 0 6155 4254 1678 134 0 0 chr11 101927318 101927556 -48855997 + AluSx SINE Alu 59 296 -16 393 305 92 32 chr11 101930483 101930765 -48852788 + MER58B DNA MER1_type 43 341 0 383 317 89 60 chr11 101933589 101933958 -48849595 - L1M4 LINE L1 -2919 3227 2848 644 176 92 0 chr11 101935054 101935173 -48848380 - FLAM_C SINE Alu -2 131 2 28 0 0 0 chr11 101938655 101938683 -48844870 + AT_rich Low_complexity Low_complexity 1 28 0 2483 74 0 0 chr11 101938856 101939155 -48844398 - AluY SINE Alu -12 299 1 21 36 0 0 chr11 101939459 101939487 -48844066 + AT_rich Low_complexity Low_complexity 1 28 0 3280 119 8 10 chr11 101939780 101940286 -48843267 - L1MA1 LINE L1 -4 6298 5794 398 323 15 8 chr11 101940309 101940442 -48843111 - MLT1K LTR MaLR -163 425 292 1293 283 86 38 chr11 101941045 101941991 -48841562 - L1M4 LINE L1 -1827 4319 3329 1095 182 0 0 chr11 101942034 101942210 -48841343 + MLT2B2 LTR ERVL 1 176 -339 410 264 155 73 chr11 101942217 101942520 -48841033 + LTR67 LTR ERVL 214 541 -16 183 80 0 0 chr11 101943788 101943813 -48839740 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 322 320 0 0 chr11 101943837 101943915 -48839638 - L2 LINE L2 -37 3235 3158 369 331 66 6 chr11 101944074 101944240 -48839313 + MIR SINE MIR 17 192 -70 313 290 116 81 chr11 101944246 101944581 -48838972 + L2 LINE L2 2926 3272 0 738 229 69 109 chr11 101944657 101944863 -48838690 - MLT1A1 LTR MaLR -2 378 165 1238 158 21 4 chr11 101944863 101945097 -48838456 - L1MA4A LINE L1 0 6303 6066 738 229 69 109 chr11 101945097 101945113 -48838440 - MLT1A1 LTR MaLR -215 165 150 1735 138 8 8 chr11 101945113 101945373 -48838180 + AluJb SINE Alu 24 283 -29 333 68 0 0 chr11 101945373 101945417 -48838136 + (CA)n Simple_repeat Simple_repeat 2 45 0 738 229 69 109 chr11 101945417 101945593 -48837960 - MLT1A1 LTR MaLR -228 152 1 388 277 54 99 chr11 101945667 101946093 -48837460 + MLT1I LTR MaLR 1 407 -2 330 273 23 116 chr11 101946576 101946748 -48836805 - L1ME3A LINE L1 -9 6161 6006 987 209 42 68 chr11 101946842 101947149 -48836404 - L1ME1 LINE L1 -5 6161 5863 3027 173 49 19 chr11 101947269 101947796 -48835757 - ERVL LTR ERVL -374 5390 4843 1876 171 78 47 chr11 101947796 101948245 -48835308 + MER31B LTR ERV1 1 463 -3 3027 173 49 19 chr11 101948245 101948290 -48835263 - ERVL LTR ERVL -921 4843 4801 197 345 154 0 chr11 101948322 101948432 -48835121 + L2 LINE L2 3142 3268 -4 227 382 32 16 chr11 101948709 101948895 -48834658 - L2 LINE L2 -557 2757 2569 307 260 110 65 chr11 101949806 101950006 -48833547 - MLT1L LTR MaLR -15 600 287 228 35 0 0 chr11 101951593 101951622 -48831931 + (CAG)n Simple_repeat Simple_repeat 2 30 0 2037 117 57 41 chr11 101952084 101952453 -48831100 + THE1C LTR MaLR 1 375 0 697 283 102 43 chr11 101952627 101953090 -48830463 - L2 LINE L2 0 3313 2824 2487 68 0 0 chr11 101953097 101953391 -48830162 + AluY SINE Alu 1 294 -17 594 191 109 79 chr11 101954448 101954715 -48828838 + ORSL DNA AcHobo 1 275 0 34 65 0 0 chr11 101955347 101955409 -48828144 + AT_rich Low_complexity Low_complexity 1 62 0 476 320 30 25 chr11 101955713 101956150 -48827403 + L1M4 LINE L1 2699 3137 -3009 699 221 19 38 chr11 101956386 101956544 -48827009 - FRAM SINE Alu -22 154 1 258 284 9 69 chr11 101956548 101956664 -48826889 - MIR SINE MIR -50 212 104 770 124 44 0 chr11 101957709 101957828 -48825725 + LTR10A LTR ERV1 438 547 0 1546 159 40 7 chr11 101957828 101958105 -48825448 + LTR10A-int LTR ERV1 4 289 -6360 2710 111 14 40 chr11 101958273 101958696 -48824857 + LTR10A-int LTR ERV1 610 1021 -5628 * 6464 161 75 36 chr11 101958679 101960297 -48823256 + LTR10A-int LTR ERV1 1234 3317 -3957 4555 219 19 26 chr11 101960277 101961670 -48821883 + LTR10A-int LTR ERV1 2573 2781 -2805 * 385 191 167 0 chr11 101961674 101961758 -48821795 - LTR8 LTR ERV1 -438 253 156 5150 75 24 0 chr11 101961763 101962500 -48821053 + BaEV-int LTR ERV1 1822 2576 -4320 * 9252 174 12 29 chr11 101962474 101964503 -48819050 + BaEV-int LTR ERV1 4060 6716 -1069 205 109 43 0 chr11 101964645 101964691 -48818862 + (TA)n Simple_repeat Simple_repeat 2 49 0 357 310 14 21 chr11 101964693 101964838 -48818715 + MER5B DNA MER1_type 21 164 -14 2239 123 0 0 chr11 101965022 101965315 -48818238 - AluSx SINE Alu -19 293 1 372 304 14 29 chr11 101965341 101965479 -48818074 - MIR SINE MIR -9 253 118 237 363 0 12 chr11 101965480 101965560 -48817993 + MIR SINE MIR 12 90 -172 282 241 158 38 chr11 101965698 101965831 -48817722 - MLT1J LTR MaLR -2 509 361 1387 92 17 5 chr11 101965837 101966047 -48817506 - L1ME LINE L1 -561 5563 5347 293 203 76 25 chr11 101966601 101966680 -48816873 - L2 LINE L2 0 3313 3231 2213 108 10 7 chr11 101966801 101967107 -48816446 - AluSx SINE Alu -5 307 1 399 21 0 0 chr11 101967118 101967166 -48816387 + (TG)n Simple_repeat Simple_repeat 1 48 0 328 322 176 19 chr11 101969129 101969390 -48814163 + MLT1J LTR MaLR 71 372 -139 376 305 69 15 chr11 101969730 101969861 -48813692 - MIR3 SINE MIR -30 178 41 21 95 0 0 chr11 101971019 101971082 -48812471 + AT_rich Low_complexity Low_complexity 1 63 0 200 161 16 0 chr11 101971139 101971201 -48812352 + (TA)n Simple_repeat Simple_repeat 1 63 0 252 59 0 0 chr11 101971205 101971239 -48812314 + (TG)n Simple_repeat Simple_repeat 1 34 0 225 0 0 0 chr11 101971291 101971316 -48812237 + (TG)n Simple_repeat Simple_repeat 2 26 0 316 162 108 81 chr11 101971316 101971427 -48812126 - HAL1 LINE L1 -19 2488 2375 1879 151 0 14 chr11 101971428 101971712 -48811841 - AluJb SINE Alu -15 297 18 488 70 84 0 chr11 101971916 101971987 -48811566 - MADE1 DNA Mariner 0 80 4 437 335 20 25 chr11 101972042 101972242 -48811311 - LTR67 LTR ERVL -323 234 36 972 176 341 24 chr11 101972248 101972538 -48811015 + L1M1 LINE L1 21 402 -7163 4173 119 53 58 chr11 101972582 101973430 -48810123 + L1M1 LINE L1 2530 3373 -4192 6966 161 21 24 chr11 101973432 101974916 -48808637 + L1M1 LINE L1 4403 5882 -1683 5684 204 72 27 chr11 101974924 101976161 -48807392 + L1PA12 LINE L1 7 1187 -6397 1955 144 3 46 chr11 101976161 101976487 -48807066 - AluSx SINE Alu 0 312 1 5684 204 72 27 chr11 101976487 101977662 -48805891 + L1PA12 LINE L1 1187 3381 -4203 318 280 70 83 chr11 101978122 101978279 -48805274 - L1ME3A LINE L1 -56 6097 5943 675 241 68 16 chr11 101978340 101978589 -48804964 - L1ME3A LINE L1 -215 5938 5677 607 283 94 35 chr11 101978592 101978957 -48804596 - L1MEd LINE L1 -4090 2039 1732 2872 0 0 3 chr11 101979086 101979422 -48804131 + AluYa5 SINE Alu 1 335 0 788 300 59 46 chr11 101979428 101980385 -48803168 - L1MEd LINE L1 -4725 1585 562 4215 151 37 81 chr11 101980399 101981222 -48802331 - L1MA9 LINE L1 -30 6282 5546 8627 80 7 1 chr11 101981222 101983225 -48800328 + L1PA7 LINE L1 4169 6150 -4 4215 151 37 81 chr11 101983225 101983651 -48799902 - L1MA9 LINE L1 -766 5546 5103 341 359 58 66 chr11 101983654 101984184 -48799369 - L1MEd LINE L1 -5545 574 49 651 245 201 67 chr11 101984255 101984688 -48798865 + MLT1H LTR MaLR 57 547 -2 408 264 50 0 chr11 101986101 101986241 -48797312 + MER103 DNA DNA 20 166 0 547 253 98 44 chr11 101986444 101986669 -48796884 + LTR16A LTR ERVL 25 261 -189 2072 269 40 39 chr11 101986671 101987365 -48796188 + ERVL LTR ERVL 1750 2444 -2552 716 337 48 21 chr11 101987365 101988035 -48795518 + ERVL LTR ERVL 4352 5088 -640 2594 157 30 11 chr11 101988178 101988706 -48794847 - L1MA4 LINE L1 -6 6294 5757 852 107 120 7 chr11 101988706 101988851 -48794702 + L1M1 LINE L1 5406 5567 -733 21 0 0 0 chr11 101988855 101988876 -48794677 + AT_rich Low_complexity Low_complexity 1 21 0 2497 150 27 18 chr11 101989026 101989467 -48794086 + MER65A LTR ERV1 1 445 0 278 241 62 83 chr11 101989473 101989714 -48793839 + L1ME3A LINE L1 5691 5926 -244 6003 121 16 13 chr11 101989795 101991324 -48792229 + L1PB1 LINE L1 4613 6150 -1 27 0 0 0 chr11 101991493 101991520 -48792033 + AT_rich Low_complexity Low_complexity 1 27 0 428 285 46 23 chr11 101993372 101993502 -48790051 - L2 LINE L2 0 3313 3181 1601 232 55 25 chr11 101994081 101994568 -48788985 + L1ME3A LINE L1 5634 6135 -35 460 248 39 0 chr11 101994895 101995024 -48788529 + MIR SINE MIR 9 142 -120 259 286 0 0 chr11 101995960 101996023 -48787530 + L2 LINE L2 3251 3313 0 645 270 17 104 chr11 101997253 101997542 -48786011 - L2 LINE L2 -5 3267 3004 23 0 0 0 chr11 101997676 101997699 -48785854 + AT_rich Low_complexity Low_complexity 1 23 0 219 269 15 30 chr11 101997702 101997769 -48785784 + L2 LINE L2 3242 3307 -6 428 305 37 37 chr11 101998546 101998733 -48784820 + MIR SINE MIR 26 212 -50 414 260 29 28 chr11 101998950 101999126 -48784427 - L2 LINE L2 -8 3305 3138 1935 147 166 0 chr11 101999164 101999531 -48784022 + MSTA LTR MaLR 1 428 0 270 0 0 0 chr11 102000694 102000724 -48782829 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 725 260 35 20 chr11 102001009 102001263 -48782290 + MIR SINE MIR 5 262 0 972 198 39 0 chr11 102001297 102001479 -48782074 - MER5A DNA MER1_type 0 189 1 810 173 0 0 chr11 102001572 102001705 -48781848 - FLAM_C SINE Alu 0 133 1 459 276 84 89 chr11 102001751 102002168 -48781385 + L1MC4a LINE L1 5890 6304 -1504 2287 65 48 0 chr11 102002168 102002460 -48781093 - AluY SINE Alu -5 306 1 2588 252 143 44 chr11 102002503 102003036 -48780517 + L1MC4 LINE L1 6342 6821 -1221 2266 109 0 0 chr11 102003036 102003347 -48780206 + AluSx SINE Alu 1 311 -1 2588 252 143 44 chr11 102003347 102003921 -48779632 + L1MC4 LINE L1 6821 7337 -705 2204 111 16 0 chr11 102003921 102004228 -48779325 + AluSp SINE Alu 1 312 -1 2588 252 143 44 chr11 102004228 102004505 -48779048 + L1MC4 LINE L1 7337 7864 -178 397 253 0 0 chr11 102004527 102004622 -48778931 - L1MC4a LINE L1 -1084 6724 6630 447 239 0 0 chr11 102004686 102004803 -48778750 + L1MC4 LINE L1 7926 8042 0 190 273 217 21 chr11 102004955 102005098 -48778455 - L2 LINE L2 -920 2394 2224 191 345 115 5 chr11 102005121 102005321 -48778232 - L2 LINE L2 -1202 2112 1891 2091 133 0 10 chr11 102005400 102005702 -48777851 + AluSx SINE Alu 1 299 -13 1904 151 0 19 chr11 102005713 102006024 -48777529 + AluJb SINE Alu 1 305 -7 202 302 0 0 chr11 102006483 102006536 -48777017 + MIR3 SINE MIR 109 161 -47 207 0 0 0 chr11 102006603 102006626 -48776927 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 220 302 0 0 chr11 102007169 102007222 -48776331 - MIR SINE MIR -3 259 207 261 119 0 0 chr11 102008388 102008430 -48775123 + (TA)n Simple_repeat Simple_repeat 1 42 0 249 239 43 0 chr11 102008433 102008525 -48775028 + L1MC4 LINE L1 6614 6709 -1333 345 195 53 80 chr11 102008540 102008653 -48774900 + L1MC4 LINE L1 6614 6723 -1319 237 180 0 0 chr11 102008653 102008703 -48774850 + (TA)n Simple_repeat Simple_repeat 1 50 0 302 250 116 39 chr11 102009531 102009763 -48773790 - L1M4 LINE L1 -1869 5237 4988 312 245 331 0 chr11 102009996 102010135 -48773418 + MIR SINE MIR 77 261 -1 581 243 0 0 chr11 102010309 102010420 -48773133 + MER81 DNA DNA 1 111 -3 26 50 0 0 chr11 102012053 102012093 -48771460 + AT_rich Low_complexity Low_complexity 1 40 0 2146 115 14 3 chr11 102013851 102014147 -48769406 - AluSx SINE Alu -13 299 1 606 339 101 13 chr11 102014396 102014791 -48768762 + L2 LINE L2 2328 2757 -557 189 0 0 0 chr11 102017265 102017286 -48766267 + (A)n Simple_repeat Simple_repeat 1 21 0 2740 19 0 7 chr11 102017429 102017737 -48765816 + AluYa5 SINE Alu 1 306 -5 1076 128 64 0 chr11 102017737 102017893 -48765660 + AluSg/x SINE Alu 134 299 -13 546 259 81 25 chr11 102017898 102018095 -48765458 + MIR SINE MIR 40 247 -15 2271 101 13 0 chr11 102019414 102019712 -48763841 - AluY SINE Alu -9 302 1 3075 154 86 28 chr11 102020101 102020778 -48762775 - L1MA9 LINE L1 -2 6310 5595 4783 232 71 29 chr11 102020789 102022344 -48761209 - L1M4 LINE L1 -2947 4159 2671 4997 181 50 16 chr11 102022344 102023212 -48760341 + MER54A LTR ERVL 3 899 -2 4783 232 71 29 chr11 102023212 102024806 -48758747 - L1M4 LINE L1 -4435 2671 4 228 284 59 10 chr11 102024815 102024917 -48758636 + MIR SINE MIR 118 224 -38 1733 194 0 0 chr11 102025322 102025616 -48757937 + AluJo SINE Alu 1 294 -18 240 347 0 0 chr11 102025744 102025839 -48757714 - L1M3e LINE L1 -5439 1591 1497 325 202 180 0 chr11 102026056 102026145 -48757408 + MIR SINE MIR 47 151 -111 298 175 138 38 chr11 102026193 102026273 -48757280 - LTR33 LTR ERVL -10 511 424 1532 198 51 13 chr11 102026283 102026609 -48756944 + MLT1A1 LTR MaLR 15 492 -13 1428 98 199 20 chr11 102026619 102026893 -48756660 + AluSx SINE Alu 1 312 0 * 2424 93 3 0 chr11 102026892 102027202 -48756351 + AluSp SINE Alu 1 311 -2 441 118 59 0 chr11 102027206 102027274 -48756279 + MLT1A1 LTR MaLR 294 365 0 788 325 22 11 chr11 102027372 102027646 -48755907 - LTR33 LTR ERVL -234 287 11 1038 164 102 45 chr11 102027696 102027759 -48755794 - Tigger2 DNA MER2_type 0 2718 2660 2266 100 3 3 chr11 102027759 102028060 -48755493 + AluSx SINE Alu 1 301 -11 1038 164 102 45 chr11 102028060 102028240 -48755313 - Tigger2 DNA MER2_type -58 2660 2461 4586 153 24 3 chr11 102028290 102029030 -48754523 - Tigger2 DNA MER2_type -1961 757 2 3179 248 57 41 chr11 102029956 102031326 -48752227 - HAL1 LINE L1 -106 2401 924 256 297 11 11 chr11 102031513 102031604 -48751949 + L3b LINE CR1 1266 1356 -227 252 213 49 0 chr11 102032080 102032141 -48751412 + MLT1K LTR MaLR 510 573 -15 317 257 124 0 chr11 102032166 102032279 -48751274 - MIR SINE MIR -14 248 122 495 344 44 50 chr11 102032383 102032703 -48750850 + L2 LINE L2 2954 3271 -1 262 265 118 39 chr11 102032754 102032856 -48750697 - L2 LINE L2 -9 3263 3154 217 132 0 53 chr11 102032834 102032872 -48750681 + L2 LINE L2 3205 3240 -32 * 25 0 0 0 chr11 102033971 102033996 -48749557 + AT_rich Low_complexity Low_complexity 1 25 0 415 299 119 20 chr11 102034071 102034272 -48749281 + MIR SINE MIR 9 229 -33 201 178 0 0 chr11 102035178 102035223 -48748330 + (TG)n Simple_repeat Simple_repeat 2 46 0 568 147 62 39 chr11 102035790 102035919 -48747634 - MIR SINE MIR 0 262 131 390 234 125 20 chr11 102035978 102036074 -48747479 + L1ME4a LINE L1 5488 5573 -548 2459 37 0 14 chr11 102036074 102036370 -48747183 + AluY SINE Alu 1 292 -19 390 234 125 20 chr11 102036370 102036557 -48746996 + L1ME4a LINE L1 5573 5825 -296 1477 223 148 31 chr11 102036635 102037446 -48746107 - L2 LINE L2 -1 3312 2403 1582 230 3 3 chr11 102037448 102037752 -48745801 + MLT1F1 LTR MaLR 1 304 -263 1038 219 26 0 chr11 102037784 102038012 -48745541 - L2 LINE L2 -908 2406 2173 254 185 193 42 chr11 102038046 102038165 -48745388 + L1ME4a LINE L1 5985 6121 0 22 0 0 0 chr11 102038452 102038474 -48745079 + AT_rich Low_complexity Low_complexity 1 22 0 34 0 0 0 chr11 102038498 102038532 -48745021 + AT_rich Low_complexity Low_complexity 1 34 0 580 276 178 19 chr11 102038594 102038964 -48744589 - L1ME4a LINE L1 -119 6002 5574 188 286 0 16 chr11 102039695 102039758 -48743795 - MIR SINE MIR -14 248 187 229 234 75 43 chr11 102039802 102039896 -48743657 - MIR SINE MIR -55 207 111 * 1056 259 115 36 chr11 102039890 102039954 -48743599 + L2 LINE L2 2686 2744 -569 1293 176 77 39 chr11 102039954 102040266 -48743287 + MER33 DNA MER1_type 1 324 0 1056 259 115 36 chr11 102040266 102040777 -48742776 + L2 LINE L2 2744 3309 -4 677 121 0 0 chr11 102041916 102042007 -48741546 + AluSg/x SINE Alu 204 294 -16 1467 153 0 20 chr11 102042237 102042491 -48741062 - L1MA4 LINE L1 -21 6279 6031 1257 162 75 92 chr11 102043265 102043389 -48740164 + MLT1C LTR MaLR 1 126 -264 2065 107 31 7 chr11 102043389 102043678 -48739875 + AluSq SINE Alu 1 296 -17 1257 162 75 92 chr11 102043678 102043962 -48739591 + MLT1C LTR MaLR 126 387 -3 1050 293 45 32 chr11 102045190 102045743 -48737810 + HAL1b LINE L1 49 608 -740 1042 169 28 0 chr11 102045753 102045931 -48737622 + MER5A DNA MER1_type 1 183 -6 682 184 143 0 chr11 102046288 102046484 -48737069 + L1MC4 LINE L1 7635 7858 -184 185 327 58 0 chr11 102047158 102047210 -48736343 - L2 LINE L2 -86 3186 3132 2504 74 0 3 chr11 102048746 102049056 -48734497 + AluY SINE Alu 1 309 -2 30 77 0 0 chr11 102049337 102049402 -48734151 + AT_rich Low_complexity Low_complexity 1 65 0 186 316 0 18 chr11 102049402 102049459 -48734094 + L2 LINE L2 3258 3313 0 192 301 55 14 chr11 102051628 102051701 -48731852 + L2 LINE L2 3197 3272 0 2271 91 0 10 chr11 102052264 102052561 -48730992 - AluSx SINE Alu -18 294 1 238 351 9 48 chr11 102054089 102054320 -48729233 + L2 LINE L2 1614 1835 -1479 2134 124 63 61 chr11 102055439 102055759 -48727794 + THE1B LTR MaLR 1 324 -40 1939 98 80 14 chr11 102055759 102055908 -48727645 - AluSp SINE Alu -8 305 167 2484 44 7 3 chr11 102055908 102056202 -48727351 - AluY SINE Alu -16 295 1 1939 98 80 14 chr11 102056202 102056338 -48727215 - AluSp SINE Alu -146 167 1 2134 124 63 61 chr11 102056338 102056380 -48727173 + THE1B LTR MaLR 324 364 0 181 298 167 10 chr11 102057938 102058136 -48725417 + L2 LINE L2 1859 2087 -1227 212 328 197 8 chr11 102059227 102059349 -48724204 + L2 LINE L2 3167 3311 -2 197 292 31 15 chr11 102060433 102060498 -48723055 - MIR SINE MIR -107 101 36 206 234 252 19 chr11 102060856 102060963 -48722590 - L3 LINE CR1 -102 1475 1344 583 251 82 38 chr11 102062431 102062614 -48720939 - MIR SINE MIR -21 241 51 389 199 26 39 chr11 102064115 102064271 -48719282 + (CA)n Simple_repeat Simple_repeat 2 155 0 643 293 17 22 chr11 102064281 102064513 -48719040 + MIR SINE MIR 32 262 0 1411 161 37 25 chr11 102064603 102064845 -48718708 + AluJb SINE Alu 64 308 -4 569 305 64 9 chr11 102065099 102065332 -48718221 - MIR SINE MIR -6 256 11 212 150 0 50 chr11 102065546 102065586 -48717967 + MER5A DNA MER1_type 45 82 -107 206 211 79 26 chr11 102066706 102066782 -48716771 + MER5B DNA MER1_type 99 178 0 1203 243 4 16 chr11 102066877 102067132 -48716421 - MIR SINE MIR -8 254 3 1802 149 13 7 chr11 102067149 102067457 -48716096 - L1M3 LINE L1 -523 5645 5336 334 128 0 0 chr11 102067463 102067510 -48716043 + MLT1A1 LTR MaLR 3 49 -325 336 71 54 2 chr11 102067510 102067566 -48715987 - MLT2A1 LTR ERVL 0 444 392 7111 62 0 8 chr11 102067566 102068435 -48715118 - HERVL-A1 LTR ERVL -4792 862 1 3301 92 2 29 chr11 102068435 102068478 -48715075 - MLT2A1 LTR ERVL 0 444 401 351 113 0 0 chr11 102068478 102068531 -48715022 + (TG)n Simple_repeat Simple_repeat 2 54 0 3301 92 2 29 chr11 102068531 102068943 -48714610 - MLT2A1 LTR ERVL -43 401 1 1801 200 6 3 chr11 102068943 102069263 -48714290 + MLT1A1 LTR MaLR 45 365 0 2037 195 16 52 chr11 102069263 102069766 -48713787 - L1M3 LINE L1 -810 5336 4852 4619 171 27 14 chr11 102069767 102070685 -48712868 + L1 LINE L1 3961 4890 -1256 832 172 0 0 chr11 102071232 102071360 -48712193 - FLAM_C SINE Alu -10 133 6 315 271 10 10 chr11 102071383 102071479 -48712074 + L1MCc LINE L1 1155 1250 -5173 2235 117 3 0 chr11 102071619 102071919 -48711634 + AluSx SINE Alu 5 305 -7 2287 170 24 24 chr11 102072070 102072530 -48711023 - MER68 LTR ERV1 -102 460 1 900 180 57 0 chr11 102072538 102072749 -48710804 + L1M4 LINE L1 2856 3078 -3068 990 181 52 0 chr11 102072778 102072971 -48710582 - MER68 LTR ERV1 -359 203 1 894 180 57 0 chr11 102072979 102073190 -48710363 + L1M4 LINE L1 2856 3078 -3068 1006 162 50 0 chr11 102073219 102073398 -48710155 - MER68 LTR ERV1 -359 203 16 5018 229 59 48 chr11 102073398 102073612 -48709941 + L1M4 LINE L1 3267 3477 -2669 2395 86 3 3 chr11 102073612 102073948 -48709605 - L1PA13 LINE L1 -7 6156 5821 5018 229 59 48 chr11 102073948 102074672 -48708881 + L1M4 LINE L1 3477 4192 -1954 3282 77 29 2 chr11 102074672 102075125 -48708428 - L1PA11 LINE L1 0 6174 5710 5018 229 59 48 chr11 102075125 102076046 -48707507 + L1M4 LINE L1 4192 5153 -993 2279 86 9 3 chr11 102076046 102076371 -48707182 + L1MA1 LINE L1 5969 6295 -7 5018 229 59 48 chr11 102076371 102076555 -48706998 + L1M4 LINE L1 5153 5334 -812 1005 254 6 12 chr11 102076546 102076885 -48706668 + L1MD2 LINE L1 4940 5276 -870 * 1948 120 12 30 chr11 102076892 102077226 -48706327 + L1MB2 LINE L1 5841 6168 -3 1495 142 108 11 chr11 102077226 102077519 -48706034 - AluSx SINE Alu 0 318 1 28 0 0 0 chr11 102077519 102077547 -48706006 + AT_rich Low_complexity Low_complexity 1 28 0 4793 88 6 1 chr11 102077611 102078269 -48705284 - L1PA10 LINE L1 -12 6156 5496 3321 117 21 3 chr11 102078269 102078931 -48704622 + L1PA10 LINE L1 4815 5485 -689 730 247 0 6 chr11 102078931 102079093 -48704460 - FRAM SINE Alu -5 161 1 21 0 0 0 chr11 102079102 102079123 -48704430 + AT_rich Low_complexity Low_complexity 1 21 0 4357 163 82 29 chr11 102079190 102079772 -48703781 + L1MD2 LINE L1 5311 5860 -499 1809 168 37 32 chr11 102079772 102079856 -48703697 - L1MB2 LINE L1 -7 6164 6082 1959 145 0 41 chr11 102079856 102080070 -48703483 - AluSx SINE Alu 0 312 141 2373 80 13 0 chr11 102080070 102080369 -48703184 - AluSp SINE Alu -10 303 1 1959 145 0 41 chr11 102080369 102080505 -48703048 - AluSx SINE Alu -171 141 1 1809 168 37 32 chr11 102080505 102080825 -48702728 - L1MB2 LINE L1 -89 6082 5758 4357 163 82 29 chr11 102080825 102081216 -48702337 + L1MD2 LINE L1 5860 6336 -23 2549 56 0 7 chr11 102081216 102081520 -48702033 - AluY SINE Alu -9 302 1 290 202 31 73 chr11 102081533 102081707 -48701846 + L1ME LINE L1 5315 5478 -692 2614 160 58 2 chr11 102081841 102082309 -48701244 + Tigger7 DNA MER2_type 32 525 -208 354 210 0 37 chr11 102082303 102082384 -48701169 + Tigger7 DNA MER2_type 2396 2473 -14 * 694 244 0 13 chr11 102082449 102082605 -48700948 - FRAM SINE Alu -22 154 1 631 218 13 6 chr11 102082637 102082793 -48700760 + L1ME LINE L1 5618 5774 -390 423 313 73 26 chr11 102082814 102083006 -48700547 - MARNA DNA Mariner -84 502 302 1850 179 3 7 chr11 102083008 102083304 -48700249 + AluJo SINE Alu 1 295 -17 507 248 124 7 chr11 102083349 102083494 -48700059 - MER5B DNA MER1_type -2 176 15 2304 209 10 18 chr11 102083571 102084082 -48699471 + LTR31 LTR ERV1 98 604 -15 209 74 0 0 chr11 102084092 102084119 -48699434 - MER5B DNA MER1_type -148 30 4 647 249 12 12 chr11 102084136 102084301 -48699252 - MARNA DNA Mariner -370 216 52 4266 96 0 0 chr11 102084708 102085342 -48698211 - L1PA7 LINE L1 -1046 5100 4467 6953 61 5 0 chr11 102085342 102086365 -48697188 + L1PA7 LINE L1 5121 6147 -7 182 143 20 0 chr11 102086371 102086420 -48697133 + (TAA)n Simple_repeat Simple_repeat 1 50 0 4990 115 17 7 chr11 102087082 102087846 -48695707 + MER4E LTR ERV1 1 772 -7 296 274 92 18 chr11 102087876 102088015 -48695538 - MIR SINE MIR -61 147 22 2130 124 39 20 chr11 102088022 102088377 -48695176 - THE1B LTR MaLR -2 362 1 2779 7 0 0 chr11 102089194 102089496 -48694057 + AluY SINE Alu 1 302 -9 529 107 0 0 chr11 102089527 102089602 -48693951 + THE1A LTR MaLR 5 79 -276 624 74 0 0 chr11 102089604 102089685 -48693868 + THE1A LTR MaLR 275 355 0 1415 190 62 28 chr11 102089743 102090096 -48693457 + MLT1A1 LTR MaLR 1 365 0 448 315 80 1 chr11 102090620 102090835 -48692718 + MIR SINE MIR 19 248 -14 452 254 224 5 chr11 102091896 102092101 -48691452 + MER110 LTR ERV1 235 484 -7 199 253 99 55 chr11 102092369 102092460 -48691093 + L2 LINE L2 3150 3244 -28 2281 33 0 0 chr11 102092542 102092812 -48690741 - L1PA4 LINE L1 -8 6147 5878 534 16 0 0 chr11 102092812 102092874 -48690679 + L1PA4 LINE L1 5831 5892 -262 434 261 69 97 chr11 102093528 102093888 -48689665 + MLT1J LTR MaLR 114 463 -48 489 235 9 17 chr11 102093909 102094024 -48689529 + MER81 DNA DNA 1 114 0 803 114 83 0 chr11 102094063 102094195 -48689358 - L1PA13 LINE L1 -19 6144 6002 1179 130 109 0 chr11 102094340 102094579 -48688974 - L1MA6 LINE L1 -4 6296 6032 2493 166 53 43 chr11 102095237 102095574 -48687979 - L1MB5 LINE L1 -8 6166 5819 2498 59 0 3 chr11 102095574 102095879 -48687674 - AluY SINE Alu -7 304 1 2493 166 53 43 chr11 102095879 102096124 -48687429 - L1MB5 LINE L1 -355 5819 5578 888 138 8 0 chr11 102096214 102096344 -48687209 - FLAM_C SINE Alu -10 133 3 264 383 85 7 chr11 102096514 102096655 -48686898 + L2 LINE L2 3121 3272 0 1913 164 0 7 chr11 102096801 102097105 -48686448 + AluSx SINE Alu 1 302 -10 422 130 0 0 chr11 102097897 102097966 -48685587 - MSTB2 LTR MaLR -1 456 388 854 195 144 76 chr11 102098005 102098324 -48685229 - MSTB2 LTR MaLR -55 402 106 1815 169 25 3 chr11 102098324 102098608 -48684945 - AluJb SINE Alu -22 290 1 787 230 12 0 chr11 102098615 102098776 -48684777 - FRAM SINE Alu -3 163 1 854 195 144 76 chr11 102098776 102098833 -48684720 - MSTB2 LTR MaLR -356 101 17 4081 241 102 86 chr11 102098849 102100410 -48683143 - MSTC-int LTR MaLR -5 1730 138 2242 96 0 29 chr11 102100410 102100723 -48682830 - AluSx SINE Alu -8 304 1 4081 241 102 86 chr11 102100723 102100863 -48682690 - MSTC-int LTR MaLR -1597 138 2 1085 187 87 26 chr11 102100863 102101221 -48682332 - MSTC LTR MaLR -2 426 1 356 143 23 41 chr11 102102058 102102144 -48681409 + AluJb SINE Alu 55 131 -171 195 351 69 64 chr11 102102653 102103018 -48680535 + L2 LINE L2 2850 3219 -53 1417 178 13 0 chr11 102103018 102103254 -48680299 - MER8 DNA MER2_type 0 239 1 195 351 69 64 chr11 102103254 102103307 -48680246 + L2 LINE L2 3219 3270 -2 1404 144 35 6 chr11 102103518 102103955 -48679598 - LTR54 LTR ERV1 0 510 1 420 310 94 39 chr11 102104150 102105190 -48678363 + L1MC4a LINE L1 4877 5999 -122 235 347 150 30 chr11 102107200 102107500 -48676053 - L2 LINE L2 -19 3253 2918 822 306 48 16 chr11 102107513 102108009 -48675544 + L1MC4a LINE L1 5446 5957 -1851 2223 184 33 2 chr11 102108017 102108441 -48675112 + MLT2B3 LTR ERVL 1 437 -117 256 242 0 15 chr11 102108720 102108786 -48674767 - MLT1I LTR MaLR 0 409 345 946 182 18 12 chr11 102108799 102108969 -48674584 + FAM SINE Alu 1 171 -4 664 112 25 137 chr11 102109075 102109236 -48674317 + MLT2B2 LTR ERVL 371 513 -2 1602 138 238 11 chr11 102109376 102109725 -48673828 + MSTA LTR MaLR 1 428 0 291 363 80 0 chr11 102110923 102111036 -48672517 - L2 LINE L2 -4 3268 3147 302 299 179 5 chr11 102111295 102111479 -48672074 + L1MC4 LINE L1 7353 7568 -474 587 263 0 0 chr11 102111488 102111625 -48671928 + MLT1F LTR MaLR 1 137 -405 234 236 57 57 chr11 102112004 102112144 -48671409 + L1ME4a LINE L1 5955 6094 -27 545 298 63 1 chr11 102113563 102113727 -48669826 + MIR SINE MIR 18 188 -62 260 246 0 33 chr11 102114803 102114864 -48668689 + L2 LINE L2 3255 3313 0 1155 86 40 10 chr11 102115055 102115253 -48668300 - L1MA8 LINE L1 -3 6288 6085 480 279 117 43 chr11 102115850 102115933 -48667620 - MIR SINE MIR -4 258 182 1514 195 92 27 chr11 102115933 102116303 -48667250 - MSTD LTR MaLR 0 396 3 480 279 117 43 chr11 102116303 102116436 -48667117 - MIR SINE MIR -80 182 30 351 313 130 43 chr11 102116464 102116809 -48666744 - L3 LINE CR1 -875 702 328 344 223 23 46 chr11 102117895 102118025 -48665528 - L1ME3 LINE L1 -81 6064 5938 259 154 19 0 chr11 102118086 102118138 -48665415 - L1ME3 LINE L1 -222 5931 5879 632 259 142 64 chr11 102118154 102119036 -48664517 - L1ME3 LINE L1 -475 5670 4707 533 211 30 6 chr11 102119065 102119231 -48664322 - L1ME3 LINE L1 -1580 4549 4380 346 285 42 35 chr11 102119571 102119715 -48663838 - L1ME3 LINE L1 -1748 4381 4237 277 243 45 36 chr11 102119747 102119858 -48663695 + CT-rich Low_complexity Low_complexity 3 114 0 * 280 333 0 0 chr11 102119785 102119860 -48663693 + polypyrimidine Low_complexity Low_complexity 4 78 0 854 240 126 34 chr11 102120055 102120729 -48662824 - L1ME3 LINE L1 -2752 3377 2642 612 155 35 9 chr11 102120771 102120887 -48662666 + L1PA16 LINE L1 5933 6051 -115 1933 157 43 39 chr11 102120887 102121436 -48662117 + MLT2A2 LTR ERVL 1 554 0 552 187 15 0 chr11 102121436 102121550 -48662003 + L1PA16 LINE L1 6047 6165 0 347 299 58 13 chr11 102121653 102121877 -48661676 - L1ME3 LINE L1 -3650 2479 2246 226 213 53 93 chr11 102121953 102122103 -48661450 - L1ME3 LINE L1 -4131 2179 2036 22 0 0 0 chr11 102122475 102122497 -48661056 + AT_rich Low_complexity Low_complexity 1 22 0 622 226 0 0 chr11 102122588 102122721 -48660832 - FAM SINE Alu -8 41 1 306 259 93 10 chr11 102122812 102123021 -48660532 - L1ME3 LINE L1 -4862 1257 1013 205 149 43 0 chr11 102123022 102123069 -48660484 + (TA)n Simple_repeat Simple_repeat 2 50 0 579 288 22 4 chr11 102123069 102123298 -48660255 - L1ME3 LINE L1 -4991 1128 896 398 360 79 22 chr11 102123403 102123452 -48660101 - L1ME3 LINE L1 -5313 806 761 245 75 25 0 chr11 102123452 102123492 -48660061 + (TTG)n Simple_repeat Simple_repeat 2 42 0 398 360 79 22 chr11 102123492 102123670 -48659883 - L1ME3 LINE L1 -5358 761 566 210 143 0 0 chr11 102123758 102123793 -48659760 + (CTTG)n Simple_repeat Simple_repeat 2 36 0 226 250 31 0 chr11 102124124 102124188 -48659365 - MLT1I LTR MaLR -7 402 337 40105 41 3 0 chr11 102124218 102129331 -48654222 + L1P LINE L1 1 5129 -1017 1798 61 0 0 chr11 102129335 102129566 -48653987 + L1PA4 LINE L1 5922 6152 -3 616 167 18 0 chr11 102129582 102129696 -48653857 - FLAM_A SINE Alu -17 116 1 659 194 90 43 chr11 102129777 102129988 -48653565 - MLT1I LTR MaLR -188 221 1 22 0 0 0 chr11 102130015 102130037 -48653516 + AT_rich Low_complexity Low_complexity 1 22 0 260 333 22 0 chr11 102130618 102130708 -48652845 - L2 LINE L2 -41 3272 3181 259 279 67 10 chr11 102130734 102130838 -48652715 + MLT1J1 LTR MaLR 196 305 -141 263 284 31 39 chr11 102131036 102131163 -48652390 - L2 LINE L2 -1011 2303 2178 1428 168 6 100 chr11 102133092 102133431 -48650122 + AluJo SINE Alu 1 307 -5 423 0 0 0 chr11 102135339 102135386 -48648167 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr11 102136144 102136165 -48647388 + AT_rich Low_complexity Low_complexity 1 21 0 438 153 108 9 chr11 102136569 102136680 -48646873 - MER95 LTR ERV 0 431 310 2599 64 0 0 chr11 102136681 102136992 -48646561 + AluY SINE Alu 1 311 0 2386 36 0 0 chr11 102136992 102137293 -48646260 + L1P LINE L1 3691 3991 -2155 30036 69 25 10 chr11 102137411 102141700 -48641853 - L1P LINE L1 -1783 4363 11 388 225 13 53 chr11 102141709 102141860 -48641693 - L1 LINE L1 -1733 4413 4269 1477 159 15 0 chr11 102141863 102142127 -48641426 + L1 LINE L1 3979 4246 -1900 203 287 64 32 chr11 102142313 102142407 -48641146 - L2 LINE L2 -5 3267 3171 324 314 65 24 chr11 102142436 102142560 -48640993 - L2 LINE L2 -11 3261 3133 182 282 0 0 chr11 102142674 102142713 -48640840 - L2 LINE L2 -217 3055 3017 790 200 179 16 chr11 102142920 102143110 -48640443 + MER58A DNA MER1_type 1 221 -3 24 32 0 0 chr11 102143286 102143317 -48640236 + AT_rich Low_complexity Low_complexity 1 31 0 427 360 29 11 chr11 102144575 102144750 -48638803 - MIR SINE MIR -54 208 31 234 213 188 12 chr11 102145336 102145416 -48638137 - MIR SINE MIR -32 230 137 4337 234 34 17 chr11 102146060 102147232 -48636321 + LTR10A-int LTR ERV1 5458 6649 0 2727 140 61 2 chr11 102147270 102147748 -48635805 + LTR10A LTR ERV1 1 506 -103 340 229 156 0 chr11 102148150 102148246 -48635307 - MIR SINE MIR -144 118 8 540 291 134 27 chr11 102148413 102148636 -48634917 - MIR SINE MIR 0 262 16 296 61 61 0 chr11 102148961 102149010 -48634543 + GA-rich Low_complexity Low_complexity 2 53 0 558 137 0 0 chr11 102149091 102149186 -48634367 + MER53 DNA DNA 1 95 -94 268 259 62 12 chr11 102149320 102149401 -48634152 + L2 LINE L2 3169 3253 -19 1767 177 39 117 chr11 102149549 102149600 -48633953 - MLT2B1 LTR ERVL 0 520 467 414 0 0 0 chr11 102149600 102149646 -48633907 + (CA)n Simple_repeat Simple_repeat 2 47 0 1767 177 39 117 chr11 102149646 102149699 -48633854 - MLT2B1 LTR ERVL -53 467 411 1756 177 20 0 chr11 102149699 102149998 -48633555 + AluJb SINE Alu 1 305 -7 1767 177 39 117 chr11 102149998 102150456 -48633097 - MLT2B1 LTR ERVL -109 411 1 360 366 61 0 chr11 102151148 102151312 -48632241 + MER5A DNA MER1_type 13 186 -3 264 228 22 43 chr11 102151345 102151437 -48632116 - MIR SINE MIR -57 205 116 1278 198 193 15 chr11 102151452 102151856 -48631697 - MLT1D LTR MaLR -29 476 1 193 356 27 0 chr11 102151861 102151934 -48631619 - MIR SINE MIR -156 106 32 481 194 230 0 chr11 102152322 102152461 -48631092 + MER5A DNA MER1_type 9 179 -10 260 267 171 48 chr11 102153025 102153130 -48630423 - L2 LINE L2 0 3272 3155 306 0 0 0 chr11 102153135 102153169 -48630384 + (CA)n Simple_repeat Simple_repeat 2 35 0 242 225 56 0 chr11 102153419 102153490 -48630063 - MER116 DNA Mariner -5 75 1 409 252 19 57 chr11 102154672 102154831 -48628722 + MIR SINE MIR 110 262 0 230 186 23 0 chr11 102156544 102156587 -48626966 - MIR SINE MIR -152 110 67 305 155 0 0 chr11 102156629 102156687 -48626866 - MLT2B1 LTR ERVL 0 520 463 328 93 19 0 chr11 102156733 102156787 -48626766 - MLT2B1 LTR ERVL -465 55 1 21 57 0 0 chr11 102157175 102157210 -48626343 + AT_rich Low_complexity Low_complexity 1 35 0 255 288 30 15 chr11 102157212 102157278 -48626275 + L2 LINE L2 3139 3205 -67 371 202 43 0 chr11 102157380 102157474 -48626079 + L1ME4a LINE L1 5950 6047 -74 294 229 0 0 chr11 102157534 102157604 -48625949 + CT-rich Low_complexity Low_complexity 4 73 0 197 250 0 0 chr11 102157712 102157756 -48625797 - MIR SINE MIR -4 258 215 375 259 48 90 chr11 102157829 102157995 -48625558 - L2 LINE L2 -173 3099 2941 383 279 116 83 chr11 102208504 102208987 -48574566 - L1M2 LINE L1 -5689 1160 662 1991 98 7 21 chr11 102209056 102209343 -48574210 + AluY SINE Alu 26 308 -3 25 31 0 0 chr11 102209363 102209395 -48574158 + AT_rich Low_complexity Low_complexity 1 32 0 2370 100 0 0 chr11 102209444 102209745 -48573808 + AluSx SINE Alu 1 301 -11 1555 188 33 0 chr11 102209842 102210113 -48573440 - AluJo SINE Alu -32 280 1 2557 21 0 0 chr11 102210113 102210427 -48573126 - AluYa5 SINE Alu 0 314 1 15213 169 38 24 chr11 102211426 102214146 -48569407 - L1PB1 LINE L1 -23 6844 4162 189 0 0 0 chr11 102214146 102214167 -48569386 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1667 160 22 0 chr11 102214169 102214444 -48569109 - AluSx SINE Alu -31 281 1 15213 169 38 24 chr11 102214444 102217017 -48566536 - L1PB1 LINE L1 -2705 4162 1538 871 140 0 0 chr11 102217005 102217141 -48566412 - L1PB1 LINE L1 -6727 136 1 * 3581 168 19 36 chr11 102218151 102218260 -48565293 - L1P LINE L1 -2605 3541 3432 2316 97 0 3 chr11 102218260 102218568 -48564985 - AluY SINE Alu -4 307 1 3581 168 19 36 chr11 102218568 102219208 -48564345 - L1P LINE L1 -2714 3432 2805 553 230 9 0 chr11 102219274 102219387 -48564166 - MER94 DNA DNA -15 119 6 289 232 0 74 chr11 102219427 102219522 -48564031 + L3 LINE CR1 670 757 -820 198 216 0 0 chr11 102219526 102219563 -48563990 + L2 LINE L2 3017 3053 -219 724 303 51 76 chr11 102219743 102220176 -48563377 + L3 LINE CR1 756 1177 -400 316 288 0 0 chr11 102220190 102220270 -48563283 - L2 LINE L2 -5 3308 3229 2344 162 8 23 chr11 102220305 102220770 -48562783 - MER89 LTR ERV1 0 559 3 301 283 150 46 chr11 102220819 102221059 -48562494 + L3 LINE CR1 1234 1498 -79 185 273 0 0 chr11 102221063 102221107 -48562446 - MER5A DNA MER1_type -7 182 139 * 234 289 0 26 chr11 102221075 102221151 -48562402 + MER5A DNA MER1_type 32 105 -84 2132 108 0 20 chr11 102221197 102221493 -48562060 + AluSx SINE Alu 1 290 -22 418 218 35 0 chr11 102221494 102221636 -48561917 + (TA)n Simple_repeat Simple_repeat 1 147 0 247 222 11 100 chr11 102221639 102221729 -48561824 + L3 LINE CR1 1494 1575 -2 207 180 33 49 chr11 102221766 102221827 -48561726 - L2 LINE L2 0 3313 3254 464 269 8 8 chr11 102221887 102222006 -48561547 - L2 LINE L2 0 3313 3195 417 242 269 7 chr11 102222531 102222680 -48560873 + MIR3 SINE MIR 18 205 -3 2905 77 3 8 chr11 102223111 102223464 -48560089 - THE1A LTR MaLR -4 351 1 12750 87 5 0 chr11 102223464 102225036 -48558517 - THE1A-int LTR MaLR 0 1580 1 2870 93 3 0 chr11 102225036 102225390 -48558163 - THE1A LTR MaLR 0 355 1 21 57 0 0 chr11 102225678 102225713 -48557840 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr11 102225735 102225756 -48557797 + AT_rich Low_complexity Low_complexity 1 21 0 487 248 8 0 chr11 102228978 102229099 -48554454 - MER103 DNA DNA -44 122 1 1981 124 3 0 chr11 102229105 102229409 -48554144 - AluSx SINE Alu 0 305 1 187 234 26 13 chr11 102229545 102229622 -48553931 + GA-rich Low_complexity Low_complexity 3 80 0 10096 191 99 28 chr11 102229929 102232468 -48551085 + L1M4 LINE L1 16 2726 -3814 2827 163 27 4 chr11 102232466 102233387 -48550166 + L1M4 LINE L1 5261 6203 -375 * 244 59 0 0 chr11 102233386 102233420 -48550133 + L1MB7 LINE L1 6132 6165 -19 * 1728 174 97 117 chr11 102233476 102234033 -48549520 + L1MD2 LINE L1 5689 6234 -8 30 89 0 0 chr11 102234138 102234217 -48549336 + AT_rich Low_complexity Low_complexity 1 79 0 297 82 20 0 chr11 102235325 102235374 -48548179 + L1MA3 LINE L1 6256 6305 0 222 290 108 70 chr11 102236435 102236621 -48546932 + MIR SINE MIR 2 194 -68 326 325 45 0 chr11 102236622 102236779 -48546774 + L1MC5 LINE L1 7717 7880 -81 1809 156 11 63 chr11 102238763 102238876 -48544677 - MLT1A1 LTR MaLR 0 365 248 1941 137 97 35 chr11 102238876 102239179 -48544374 - MSTA LTR MaLR 0 428 92 2325 104 0 3 chr11 102239179 102239488 -48544065 + AluSg SINE Alu 1 308 -2 1941 137 97 35 chr11 102239488 102239586 -48543967 - MSTA LTR MaLR -336 92 2 1809 156 11 63 chr11 102239586 102239851 -48543702 - MLT1A1 LTR MaLR -117 248 7 374 307 12 1 chr11 102240682 102240858 -48542695 - L1ME LINE L1 -730 5432 5255 3458 166 88 16 chr11 102242668 102243443 -48540110 - Charlie5 DNA MER1_type 0 2624 1794 3097 147 14 0 chr11 102244082 102244592 -48538961 + L1MB7 LINE L1 5661 6177 -7 383 252 114 32 chr11 102244814 102244937 -48538616 + MIR3 SINE MIR 30 162 -46 522 344 54 26 chr11 102245074 102245464 -48538089 + L2 LINE L2 1223 1623 -1691 346 216 276 9 chr11 102245770 102245886 -48537667 + L2 LINE L2 3167 3313 0 2155 119 10 0 chr11 102245892 102246194 -48537359 + AluSg SINE Alu 1 305 -5 29 0 0 0 chr11 102246619 102246648 -48536905 + AT_rich Low_complexity Low_complexity 1 29 0 1499 148 38 27 chr11 102246748 102247011 -48536542 + AluJb SINE Alu 29 294 -18 309 284 71 66 chr11 102248733 102248944 -48534609 + L1ME4a LINE L1 5817 6028 -93 387 213 237 53 chr11 102250338 102250545 -48533008 + MIR SINE MIR 5 249 -13 * 957 236 13 9 chr11 102250501 102250726 -48532827 - MIR SINE MIR -21 241 16 319 305 42 34 chr11 102250814 102250932 -48532621 - L2 LINE L2 -2 3270 3152 196 306 90 81 chr11 102251242 102251353 -48532200 - L2 LINE L2 -8 3264 3153 2378 81 0 0 chr11 102251752 102252050 -48531503 + AluSg SINE Alu 1 298 -12 2404 86 0 0 chr11 102252378 102252679 -48530874 + AluSg SINE Alu 1 301 -9 326 225 87 14 chr11 102252690 102252828 -48530725 + L1MC5 LINE L1 7370 7517 -444 294 242 0 0 chr11 102252915 102252977 -48530576 + MIR3 SINE MIR 132 193 -15 258 286 175 16 chr11 102253292 102253418 -48530135 + MIR SINE MIR 67 212 -50 682 244 11 45 chr11 102253418 102253684 -48529869 + L1MC5 LINE L1 7493 7749 -212 846 96 0 57 chr11 102253861 102254038 -48529515 + (TCC)n Simple_repeat Simple_repeat 1 167 0 966 200 0 40 chr11 102254038 102254238 -48529315 - AluJb SINE Alu -7 305 114 686 131 103 86 chr11 102254268 102254443 -48529110 - AluSg/x SINE Alu 0 312 135 371 325 45 13 chr11 102254464 102254621 -48528932 + L2 LINE L2 2999 3160 -112 434 293 11 64 chr11 102254966 102255154 -48528399 + MIR SINE MIR 1 178 -84 295 177 115 21 chr11 102256498 102256594 -48526959 + L1ME4a LINE L1 5995 6099 -22 204 237 0 0 chr11 102257343 102257381 -48526172 - MIR SINE MIR -5 257 220 218 322 140 62 chr11 102257506 102257798 -48525755 + L2 LINE L2 2948 3262 -10 400 274 26 18 chr11 102258064 102258177 -48525376 + MIR3 SINE MIR 93 206 -2 21 0 0 0 chr11 102258875 102258896 -48524657 + AT_rich Low_complexity Low_complexity 1 21 0 461 275 118 60 chr11 102258984 102259666 -48523887 - L1ME4a LINE L1 -91 6030 5296 2239 104 0 7 chr11 102259676 102259973 -48523580 - AluSx SINE Alu -13 299 5 256 282 98 15 chr11 102260250 102260495 -48523058 - L1ME4a LINE L1 -1481 4665 4407 33 0 0 0 chr11 102260513 102260546 -48523007 + AT_rich Low_complexity Low_complexity 1 33 0 321 265 161 54 chr11 102260548 102261114 -48522439 - L1ME4a LINE L1 -1719 4427 3786 1902 162 43 97 chr11 102261114 102261607 -48521946 - MLT1C LTR MaLR -1 466 1 321 265 161 54 chr11 102261607 102261667 -48521886 - L1ME4a LINE L1 -2360 3786 3734 528 114 51 0 chr11 102261679 102261758 -48521795 + L1MA4 LINE L1 2 84 -5244 7656 150 16 35 chr11 102261758 102264106 -48519447 + L1MA4 LINE L1 4179 6481 -1 673 304 118 36 chr11 102264132 102264685 -48518868 - L1ME4a LINE L1 -2460 3686 3089 22 0 0 0 chr11 102264804 102264826 -48518727 + AT_rich Low_complexity Low_complexity 1 22 0 237 346 111 0 chr11 102267005 102267158 -48516395 - L3b LINE CR1 -105 1478 1309 586 334 84 30 chr11 102267166 102267764 -48515789 + L1ME4a LINE L1 4705 5334 -812 333 281 130 43 chr11 102267770 102268207 -48515346 + L1ME4a LINE L1 5299 5775 -743 980 154 259 0 chr11 102268224 102268425 -48515128 + Tigger3(Golem) DNA MER2_type 2776 3028 -1 326 234 19 28 chr11 102268504 102268611 -48514942 + L1ME4a LINE L1 5963 6068 -53 22 56 0 0 chr11 102269461 102269497 -48514056 + AT_rich Low_complexity Low_complexity 1 36 0 2244 105 0 13 chr11 102269814 102270147 -48513406 - AluSx SINE Alu 0 312 1 516 227 61 0 chr11 102270416 102270548 -48513005 + MER103 DNA DNA 17 156 -10 219 304 130 0 chr11 102270699 102270791 -48512762 + MIR SINE MIR 89 192 -70 2458 53 0 3 chr11 102274232 102274532 -48509021 - AluY SINE Alu -12 299 1 226 263 158 21 chr11 102274873 102274968 -48508585 + MIR SINE MIR 91 198 -64 742 202 168 17 chr11 102274970 102275143 -48508410 - MIR SINE MIR 0 262 64 1923 108 22 7 chr11 102275220 102275498 -48508055 + AluY SINE Alu 1 282 -29 604 88 0 0 chr11 102275418 102275498 -48508055 + AluSg/x SINE Alu 202 308 0 211 37 0 0 chr11 102275498 102275525 -48508028 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 211 285 139 66 chr11 102276311 102276448 -48507105 + MER5B DNA MER1_type 1 147 -31 1891 223 45 48 chr11 102276505 102277123 -48506430 - L1ME3A LINE L1 -42 6128 5513 18952 32 0 0 chr11 102277123 102280186 -48503367 + L1PA3 LINE L1 3090 6155 0 577 234 94 58 chr11 102280188 102280496 -48503057 - LTR47B LTR ERVL -121 322 4 235 376 11 11 chr11 102280516 102280609 -48502944 + MIR SINE MIR 36 128 -134 245 26 0 51 chr11 102280845 102280884 -48502669 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 8919 22 2 0 chr11 102280884 102281977 -48501576 + L1PA4 LINE L1 3469 4563 -1583 40976 28 21 3 chr11 102281977 102288005 -48495548 + L1HS LINE L1 15 6155 0 197 29 0 86 chr11 102288005 102288029 -48495524 + (A)n Simple_repeat Simple_repeat 1 23 -9 7041 33 36 0 chr11 102288029 102289610 -48493943 + L1PA4 LINE L1 4548 6152 -3 197 29 0 86 chr11 102289610 102289620 -48493933 + (A)n Simple_repeat Simple_repeat 23 32 0 386 316 105 19 chr11 102289637 102289846 -48493707 - L1MB7 LINE L1 -48 6136 5910 609 272 59 9 chr11 102289860 102290144 -48493409 - L1ME3A LINE L1 -636 5528 5234 575 261 167 8 chr11 102290513 102290758 -48492795 + L2 LINE L2 3013 3296 -17 290 327 142 13 chr11 102290992 102291218 -48492335 + L2 LINE L2 1871 2125 -1189 224 226 19 0 chr11 102291231 102291284 -48492269 - MIR SINE MIR 0 262 209 1900 172 31 31 chr11 102291339 102291757 -48491796 + L1MB5 LINE L1 5748 6165 -9 1665 304 65 57 chr11 102291789 102291818 -48491735 - L2 LINE L2 -136 3177 3150 2350 107 0 0 chr11 102291818 102292128 -48491425 + AluSx SINE Alu 1 310 -2 1665 304 65 57 chr11 102292128 102293224 -48490329 - L2 LINE L2 -163 3150 2054 688 277 69 86 chr11 102293410 102293818 -48489735 - L2 LINE L2 -2011 1303 903 22 56 0 0 chr11 102294500 102294536 -48489017 + AT_rich Low_complexity Low_complexity 1 36 0 2277 112 0 13 chr11 102294853 102295186 -48488367 - AluSx SINE Alu 0 312 1 472 204 68 8 chr11 102295455 102295587 -48487966 + MER103 DNA DNA 17 156 -10 210 304 130 0 chr11 102295738 102295830 -48487723 + MIR SINE MIR 89 192 -70 2490 53 0 3 chr11 102299271 102299570 -48483983 - AluY SINE Alu -13 298 1 214 188 188 29 chr11 102299937 102300006 -48483547 + MIR SINE MIR 119 198 -64 729 202 168 17 chr11 102300008 102300181 -48483372 - MIR SINE MIR 0 262 64 1963 108 22 7 chr11 102300258 102300563 -48482990 + AluY SINE Alu 1 309 0 211 285 139 66 chr11 102301349 102301486 -48482067 + MER5B DNA MER1_type 1 147 -31 1878 213 37 53 chr11 102301543 102302110 -48481443 - L1ME3A LINE L1 -42 6128 5571 18887 34 0 0 chr11 102302155 102305217 -48478336 + L1PA3 LINE L1 3090 6154 -1 577 234 94 58 chr11 102305217 102305525 -48478028 - LTR47B LTR ERVL -121 322 4 235 376 11 11 chr11 102305545 102305638 -48477915 + MIR SINE MIR 36 128 -134 245 26 0 51 chr11 102305874 102305913 -48477640 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 16099 27 33 1 chr11 102305913 102308567 -48474986 + L1PA4 LINE L1 3469 6152 -3 230 255 66 38 chr11 102308594 102308700 -48474853 - L1MB7 LINE L1 -48 6136 6028 609 272 59 9 chr11 102308817 102309101 -48474452 - L1ME3A LINE L1 -634 5528 5234 575 261 167 8 chr11 102309470 102309715 -48473838 + L2 LINE L2 3013 3296 -17 290 327 142 13 chr11 102309949 102310175 -48473378 + L2 LINE L2 1871 2125 -1189 224 226 19 0 chr11 102310188 102310241 -48473312 - MIR SINE MIR 0 262 209 1898 172 31 31 chr11 102310296 102310714 -48472839 + L1MB5 LINE L1 5748 6165 -9 1674 307 66 55 chr11 102310746 102310775 -48472778 - L2 LINE L2 -136 3177 3150 2337 109 0 0 chr11 102310775 102311086 -48472467 + AluSx SINE Alu 1 311 -1 1674 307 66 55 chr11 102311086 102312177 -48471376 - L2 LINE L2 -163 3150 2054 855 293 85 68 chr11 102312363 102312881 -48470672 - L2 LINE L2 -2011 1303 777 509 325 90 8 chr11 102312892 102313126 -48470427 + L2 LINE L2 2127 2379 -935 1463 191 37 37 chr11 102313201 102313479 -48470074 + AluJo SINE Alu 1 281 -31 216 0 0 0 chr11 102313479 102313503 -48470050 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 1463 191 37 37 chr11 102313503 102313522 -48470031 + AluJo SINE Alu 280 298 -14 204 368 53 0 chr11 102313522 102313617 -48469936 + L2 LINE L2 2363 2462 -852 1101 218 58 65 chr11 102313619 102314064 -48469489 - LTR16A1 LTR ERVL -2 455 14 2007 345 34 8 chr11 102314243 102315330 -48468223 - ERVL LTR ERVL -213 5272 4181 431 351 42 23 chr11 102315382 102315641 -48467912 - ERVL LTR ERVL -2150 3335 3072 2591 37 0 0 chr11 102315674 102315969 -48467584 + AluY SINE Alu 3 297 -14 1032 296 52 29 chr11 102316024 102316607 -48466946 - ERVL LTR ERVL -2050 2971 2406 22 0 0 0 chr11 102316843 102316865 -48466688 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 102318111 102318134 -48465419 + AT_rich Low_complexity Low_complexity 1 23 0 225 273 0 0 chr11 102318541 102318607 -48464946 + (TA)n Simple_repeat Simple_repeat 2 67 0 969 192 47 9 chr11 102318844 102319058 -48464495 - MLT1A1 LTR MaLR 0 365 144 35060 87 16 12 chr11 102319058 102325175 -48458378 - L1PA6 LINE L1 -2 6152 11 654 201 7 26 chr11 102325190 102325303 -48458250 - MLT1A1 LTR MaLR -214 151 40 1867 143 78 0 chr11 102325303 102325625 -48457928 - MER7A DNA MER2_type 0 346 2 654 201 7 26 chr11 102325625 102325665 -48457888 - MLT1A1 LTR MaLR -325 40 1 226 394 58 10 chr11 102325735 102325839 -48457714 - MIR SINE MIR -84 124 16 575 277 14 0 chr11 102326937 102327078 -48456475 + MIR SINE MIR 117 259 -3 2238 212 73 13 chr11 102327201 102327748 -48455805 - L1MB8 LINE L1 -4 6174 5595 7297 206 49 44 chr11 102327758 102329808 -48453745 - L1MB8 LINE L1 -710 5464 3407 2093 134 0 0 chr11 102330549 102330841 -48452712 + AluSc SINE Alu 1 292 -17 1643 187 89 6 chr11 102330902 102331239 -48452314 - MLT1A1 LTR MaLR 0 365 1 255 214 0 0 chr11 102331709 102331779 -48451774 + (TA)n Simple_repeat Simple_repeat 1 70 0 193 309 15 15 chr11 102332163 102332231 -48451322 - L2 LINE L2 -2 3270 3203 254 370 56 65 chr11 102332488 102332704 -48450849 - L2 LINE L2 -10 3262 3049 664 221 143 0 chr11 102332824 102332978 -48450575 + MER45A DNA AcHobo 3 178 0 2249 218 110 18 chr11 102333180 102333337 -48450216 + L1MD1 LINE L1 57 198 -6342 2740 177 9 7 chr11 102333337 102333801 -48449752 + MLT1C LTR MaLR 3 467 0 2249 218 110 18 chr11 102333801 102334252 -48449301 + L1MD1 LINE L1 198 721 -5819 6889 62 2 19 chr11 102334264 102335484 -48448069 + L1PA7 LINE L1 4939 6154 0 5762 231 86 38 chr11 102335676 102336707 -48446846 + L1MD1 LINE L1 3373 4353 -2187 2198 72 4 0 chr11 102336707 102336972 -48446581 + AluSc SINE Alu 23 288 -21 5762 231 86 38 chr11 102336972 102338041 -48445512 + L1MD1 LINE L1 4353 5573 -967 38984 83 12 6 chr11 102338056 102344169 -48439384 + L1PA6 LINE L1 11 6148 -6 4725 181 34 16 chr11 102344217 102345241 -48438312 + L1MD1 LINE L1 5569 6613 -23 404 213 57 6 chr11 102345241 102345329 -48438224 - MER58 DNA MER1_type -247 94 14 2015 287 108 21 chr11 102345892 102346658 -48436895 - HAL1 LINE L1 -1564 943 111 1102 247 77 69 chr11 102346660 102347183 -48436370 + LTR1B LTR ERV1 1 527 -299 665 261 80 28 chr11 102347164 102347413 -48436140 + LTR28 LTR ERV1 759 1020 0 * 851 129 0 8 chr11 102347579 102347703 -48435850 - AluSg/x SINE Alu -18 292 170 2262 101 10 3 chr11 102348857 102349154 -48434399 - AluSg SINE Alu -11 299 1 3505 128 99 12 chr11 102350060 102350699 -48432854 - L1PA16 LINE L1 0 6166 5473 5591 118 77 29 chr11 102350701 102351668 -48431885 - L1MA8 LINE L1 -19 6272 5262 1505 95 99 20 chr11 102351668 102351921 -48431632 - L1MA1 LINE L1 -4 6298 6026 5591 118 77 29 chr11 102351921 102352167 -48431386 - L1MA8 LINE L1 -1029 5262 5029 422 229 28 62 chr11 102352604 102352748 -48430805 + L2 LINE L2 3169 3307 -6 275 215 177 0 chr11 102352783 102352862 -48430691 - HAL1b LINE L1 -847 501 409 411 250 57 0 chr11 102352878 102353002 -48430551 - L1M4 LINE L1 -4832 1710 1596 292 304 102 30 chr11 102353025 102353291 -48430262 - L1M4 LINE L1 -3439 2707 2423 2272 72 0 84 chr11 102353310 102353642 -48429911 + AluY SINE Alu 1 304 -7 247 316 129 24 chr11 102356119 102356328 -48427225 - MIR SINE MIR -12 250 20 298 122 0 20 chr11 102356640 102356689 -48426864 + MIR SINE MIR 20 67 -195 471 178 132 16 chr11 102356883 102357012 -48426541 + MIR SINE MIR 63 206 -56 206 175 0 0 chr11 102357248 102357288 -48426265 - MIR SINE MIR -123 139 100 306 0 0 0 chr11 102358708 102358742 -48424811 + (CA)n Simple_repeat Simple_repeat 1 34 0 261 288 117 0 chr11 102359788 102359899 -48423654 - L2 LINE L2 -3 3269 3146 375 273 117 57 chr11 102360091 102360425 -48423128 - LTR67 LTR ERVL -6 551 198 349 299 88 7 chr11 102361130 102361267 -48422286 + MIR SINE MIR 37 184 -78 251 252 27 72 chr11 102361530 102361641 -48421912 - MIR SINE MIR -85 177 72 441 224 276 21 chr11 102362358 102362644 -48420909 - L2 LINE L2 -983 2331 1973 305 292 108 8 chr11 102364387 102364507 -48419046 + MIR SINE MIR 13 144 -118 1468 170 42 16 chr11 102364873 102365185 -48418368 + MER33 DNA MER1_type 1 320 -4 210 364 0 30 chr11 102365603 102365702 -48417851 + L2 LINE L2 3173 3268 -4 244 272 74 0 chr11 102365809 102365890 -48417663 - MIR SINE MIR -69 193 107 285 278 113 9 chr11 102366167 102366282 -48417271 - MIR SINE MIR -113 149 23 252 278 52 17 chr11 102367779 102367894 -48415659 + MIR SINE MIR 45 163 -99 * 878 254 270 21 chr11 102367892 102369114 -48414439 - L2 LINE L2 -6 3307 1753 548 217 28 35 chr11 102369104 102369247 -48414306 + MIR SINE MIR 20 161 -101 * 441 289 151 14 chr11 102369360 102369651 -48413902 - L2 LINE L2 -1922 1392 1062 315 274 11 0 chr11 102370469 102370564 -48412989 + MER112 DNA MER1_type 147 242 -18 255 343 35 30 chr11 102370693 102370947 -48412606 + L3 LINE CR1 1256 1566 -11 443 285 77 30 chr11 102371402 102371637 -48411916 - MIR SINE MIR -15 247 2 204 294 59 0 chr11 102372239 102372307 -48411246 - L2 LINE L2 0 3272 3201 696 280 117 19 chr11 102372334 102372745 -48410808 - L2 LINE L2 0 3313 2863 280 292 82 52 chr11 102374788 102375055 -48408498 + L2 LINE L2 2698 2972 -342 556 285 86 56 chr11 102375650 102376082 -48407471 - L2 LINE L2 -560 2754 2310 236 192 0 58 chr11 102378387 102378439 -48405114 - L2 LINE L2 -1 3312 3264 286 228 105 40 chr11 102379735 102379883 -48403670 - MLT1H LTR MaLR -57 492 341 268 218 73 0 chr11 102380656 102380711 -48402842 + MIR3 SINE MIR 102 160 -48 446 256 94 8 chr11 102380711 102380828 -48402725 + MER5C DNA MER1_type 1 127 -197 1160 213 143 37 chr11 102380880 102381336 -48402217 - MLT1D LTR MaLR 0 505 2 489 271 129 12 chr11 102382172 102382427 -48401126 + L1ME4a LINE L1 5561 5845 -276 538 248 191 43 chr11 102382438 102382648 -48400905 - MIR SINE MIR -1 261 21 599 206 71 27 chr11 102382655 102382694 -48400859 + MLT1D LTR MaLR 1 37 -468 2137 115 56 34 chr11 102382694 102383050 -48400503 - THE1B LTR MaLR 0 364 1 599 206 71 27 chr11 102383050 102383194 -48400359 + MLT1D LTR MaLR 37 192 -313 186 71 0 0 chr11 102383197 102383225 -48400328 + (CA)n Simple_repeat Simple_repeat 2 29 0 911 181 117 28 chr11 102383225 102383466 -48400087 + MLT1D LTR MaLR 217 505 0 345 234 124 7 chr11 102383553 102383698 -48399855 + L1ME4a LINE L1 5957 6118 -3 182 307 57 23 chr11 102384943 102385031 -48398522 + L2 LINE L2 3219 3309 -4 251 196 0 39 chr11 102385048 102385099 -48398454 + MIR3 SINE MIR 115 163 -45 306 0 0 0 chr11 102385425 102385459 -48398094 + (ATG)n Simple_repeat Simple_repeat 3 36 0 187 341 152 15 chr11 102385467 102385599 -48397954 - L2 LINE L2 -16 3256 3107 243 326 0 23 chr11 102385603 102385689 -48397864 + (CATA)n Simple_repeat Simple_repeat 2 85 0 6178 167 79 30 chr11 102385827 102386003 -48397550 + Charlie1a DNA MER1_type 41 207 -2554 2278 73 0 10 chr11 102386003 102386303 -48397250 - AluY SINE Alu -14 297 1 6178 167 79 30 chr11 102386303 102386685 -48396868 + Charlie1a DNA MER1_type 207 569 -2192 1867 123 32 0 chr11 102386685 102386970 -48396583 + AluSx SINE Alu 1 294 -18 6178 167 79 30 chr11 102386970 102387759 -48395794 + Charlie1a DNA MER1_type 569 1455 0 1643 194 3 3 chr11 102388570 102388874 -48394679 + AluJb SINE Alu 1 304 -8 4272 99 3 13 chr11 102388927 102389540 -48394013 + L1PB1 LINE L1 5542 6148 -3 360 269 157 0 chr11 102389618 102389752 -48393801 + MIR SINE MIR 96 250 -12 1914 142 0 0 chr11 102390386 102390681 -48392872 + AluSx SINE Alu 9 303 -9 4072 156 88 40 chr11 102390943 102391768 -48391785 + MER6 DNA MER2_type 1 865 0 3206 155 51 34 chr11 102391770 102392362 -48391191 + MER7C DNA MER2_type 1 602 0 261 267 271 27 chr11 102392474 102392699 -48390854 - L2 LINE L2 -368 2946 2667 621 231 20 20 chr11 102392700 102392851 -48390702 + MIR SINE MIR 72 221 -41 438 266 25 25 chr11 102392885 102393043 -48390510 + MER112 DNA MER1_type 90 247 -13 239 296 126 15 chr11 102393082 102393217 -48390336 - L2 LINE L2 -790 2524 2375 308 227 36 113 chr11 102393469 102393663 -48389890 + L2 LINE L2 3132 3310 -3 420 283 151 47 chr11 102394306 102394518 -48389035 - MIR SINE MIR 0 262 29 223 282 81 40 chr11 102394898 102395022 -48388531 - MIR SINE MIR -48 214 86 30 45 0 0 chr11 102395654 102395698 -48387855 + AT_rich Low_complexity Low_complexity 1 44 0 2257 93 7 0 chr11 102396040 102396341 -48387212 + AluSx SINE Alu 6 308 -4 304 185 0 31 chr11 102396865 102396930 -48386623 - MIR SINE MIR -5 257 195 542 286 114 22 chr11 102397146 102397373 -48386180 - MIR SINE MIR -1 261 14 2801 178 25 24 chr11 102397463 102398052 -48385501 - L1MB5 LINE L1 0 6174 5585 253 306 83 25 chr11 102399676 102399797 -48383756 - MIR3 SINE MIR -40 168 41 586 274 114 17 chr11 102399841 102400078 -48383475 - MIR SINE MIR -2 260 1 557 328 60 17 chr11 102400897 102401132 -48382421 - MIR SINE MIR -10 252 8 279 268 163 8 chr11 102401478 102401601 -48381952 + MER112 DNA MER1_type 119 260 0 195 294 11 54 chr11 102401642 102401734 -48381819 - L3b LINE CR1 -195 1388 1301 184 200 118 94 chr11 102402431 102402516 -48381037 - MIR3 SINE MIR -45 163 77 823 158 10 87 chr11 102402664 102402860 -48380693 + AluJo SINE Alu 118 298 -14 1750 158 0 4 chr11 102402905 102403183 -48380370 + AluSx SINE Alu 2 278 -34 348 266 119 7 chr11 102403677 102403820 -48379733 - MIR SINE MIR -57 205 47 185 148 0 0 chr11 102404015 102404042 -48379511 + MIR SINE MIR 126 152 -110 540 273 60 16 chr11 102404714 102404897 -48378656 + MIR SINE MIR 20 210 -52 228 259 9 83 chr11 102406243 102406351 -48377202 - MIR SINE MIR -46 216 117 442 318 8 0 chr11 102406816 102406942 -48376611 + MIR3 SINE MIR 45 171 -37 304 156 42 115 chr11 102406942 102406994 -48376559 + L1MB3 LINE L1 6095 6138 -45 1681 169 10 17 chr11 102406994 102407289 -48376264 - AluJb SINE Alu -19 293 1 304 156 42 115 chr11 102407289 102407332 -48376221 + L1MB3 LINE L1 6138 6183 0 545 218 73 32 chr11 102407343 102407467 -48376086 - FLAM_A SINE Alu -3 130 2 266 260 42 21 chr11 102407495 102407591 -48375962 + MIR SINE MIR 164 261 -1 351 225 62 21 chr11 102408226 102408350 -48375203 - MIR3 SINE MIR -45 163 32 258 233 248 25 chr11 102410085 102410287 -48373266 + L2 LINE L2 2731 2977 -337 381 193 61 0 chr11 102410434 102410535 -48373018 + MLT1C LTR MaLR 6 119 -348 1689 244 15 90 chr11 102410535 102411126 -48372427 + MLT2B3 LTR ERVL 1 547 -7 428 144 39 58 chr11 102411144 102411248 -48372305 + L1MB2 LINE L1 6070 6171 0 702 82 10 10 chr11 102411254 102411352 -48372201 + MER4A LTR ERV1 1 98 -566 1818 134 11 25 chr11 102411352 102411702 -48371851 + MER4A LTR ERV1 261 664 0 381 73 206 0 chr11 102411704 102411772 -48371781 + MLT1C LTR MaLR 120 201 -266 734 174 83 0 chr11 102411773 102411905 -48371648 + MLT2B3 LTR ERVL 2 144 -410 * 1456 131 0 88 chr11 102411898 102412172 -48371381 + MLT2B3 LTR ERVL 305 554 0 599 211 17 2 chr11 102412172 102412389 -48371164 + MLT1C LTR MaLR 197 465 -2 368 223 11 53 chr11 102412412 102412506 -48371047 + L2 LINE L2 3177 3266 -47 189 316 44 35 chr11 102413007 102413121 -48370432 + MIR3 SINE MIR 44 158 -50 2018 123 0 13 chr11 102413433 102413735 -48369818 + AluSx SINE Alu 1 298 -14 444 19 0 0 chr11 102413744 102413797 -48369756 + (CA)n Simple_repeat Simple_repeat 2 54 0 382 243 0 9 chr11 102413798 102413904 -48369649 - L1MC4 LINE L1 -1339 6983 1995 189 0 0 0 chr11 102413904 102413925 -48369628 + (GA)n Simple_repeat Simple_repeat 2 22 0 652 292 65 9 chr11 102413966 102414182 -48369371 - MIR SINE MIR -7 255 28 231 36 0 0 chr11 102415316 102415344 -48368209 + (CAG)n Simple_repeat Simple_repeat 2 29 0 370 295 129 58 chr11 102415747 102416179 -48367374 + L1ME4a LINE L1 5530 6017 -104 235 331 137 34 chr11 102418535 102418710 -48364843 + MIR SINE MIR 23 215 -47 25 0 0 0 chr11 102419476 102419501 -48364052 + AT_rich Low_complexity Low_complexity 1 25 0 265 212 61 0 chr11 102419843 102419909 -48363644 - MIR SINE MIR -94 168 99 200 279 154 59 chr11 102420047 102420183 -48363370 - MIR SINE MIR -52 210 62 225 250 0 66 chr11 102420642 102420718 -48362835 + MIR SINE MIR 54 124 -84 190 298 95 0 chr11 102421372 102421456 -48362097 - L3b LINE CR1 -127 1456 1365 * 345 304 43 7 chr11 102421454 102421592 -48361961 - MIR3 SINE MIR -62 146 4 31 68 0 0 chr11 102422701 102422760 -48360793 + GC_rich Low_complexity Low_complexity 1 59 0 244 113 25 50 chr11 102422764 102422844 -48360709 + (CCG)n Simple_repeat Simple_repeat 1 78 0 262 302 10 52 chr11 102423254 102423350 -48360203 + L2 LINE L2 3168 3259 -13 405 299 111 28 chr11 102423570 102423787 -48359766 + MIR SINE MIR 28 262 0 219 260 0 0 chr11 102424260 102424310 -48359243 + MIR SINE MIR 103 152 -110 2246 95 3 3 chr11 102424834 102425138 -48358415 + AluSq SINE Alu 1 304 -9 508 258 90 36 chr11 102425285 102425652 -48357901 + MLT1H LTR MaLR 108 549 0 190 284 34 34 chr11 102425828 102425916 -48357637 - L3 LINE CR1 -580 997 910 181 282 0 0 chr11 102425968 102426007 -48357546 + L2 LINE L2 3136 3174 -98 529 218 54 54 chr11 102426030 102426177 -48357376 - MIR3 SINE MIR -2 206 60 329 331 39 30 chr11 102426251 102426524 -48357029 + L2 LINE L2 2719 2999 -314 644 316 162 0 chr11 102426933 102427199 -48356354 + L2 LINE L2 3005 3313 0 1997 133 24 30 chr11 102428196 102428526 -48355027 - MER51B LTR ERV1 0 377 50 452 151 140 11 chr11 102428542 102428635 -48354918 - MER51A LTR ERV1 -529 105 1 319 287 11 11 chr11 102428744 102428831 -48354722 - MIR SINE MIR -89 173 87 1841 157 0 33 chr11 102428988 102429287 -48354266 - AluJb SINE Alu -23 289 1 1730 138 10 55 chr11 102429906 102430197 -48353356 + AluJo SINE Alu 1 278 -34 212 0 36 0 chr11 102430202 102430230 -48353323 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 304 381 7 14 chr11 102430559 102430698 -48352855 - L2 LINE L2 -1 3271 3134 201 362 27 40 chr11 102431148 102431297 -48352256 + L2 LINE L2 3126 3272 0 2064 118 59 0 chr11 102431681 102431968 -48351585 - AluSx SINE Alu -8 304 1 2195 105 0 0 chr11 102431971 102432300 -48351253 - AluSx SINE Alu 0 329 1 1801 169 140 9 chr11 102432905 102433342 -48350211 + Charlie4a DNA MER1_type 1 494 -14 959 200 0 80 chr11 102433578 102433828 -48349725 + L1MB5 LINE L1 5927 6156 -18 210 229 219 0 chr11 102434680 102434776 -48348777 - MIR SINE MIR -70 192 76 299 302 145 55 chr11 102434793 102435137 -48348416 + L2 LINE L2 2812 3186 -86 1661 188 17 0 chr11 102436441 102436734 -48346819 + 7SLRNA srpRNA srpRNA 1 298 -22 408 20 0 0 chr11 102436734 102436783 -48346770 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 23 0 0 0 chr11 102437013 102437036 -48346517 + AT_rich Low_complexity Low_complexity 1 23 0 1641 139 15 0 chr11 102438334 102438593 -48344960 + L1MA9 LINE L1 6049 6311 -1 660 294 29 13 chr11 102438763 102439001 -48344552 - LTR67 LTR ERVL -311 246 5 2540 156 15 35 chr11 102439762 102440103 -48343450 - L1MB5 LINE L1 0 6174 5828 2378 191 45 39 chr11 102440103 102440524 -48343029 + MLT2B1 LTR ERVL 1 418 -102 2354 97 0 10 chr11 102440524 102440832 -48342721 - AluSx SINE Alu -7 305 1 2378 191 45 39 chr11 102440832 102440857 -48342696 + MLT2B1 LTR ERVL 418 441 -79 405 0 0 0 chr11 102440857 102440902 -48342651 + (TG)n Simple_repeat Simple_repeat 2 46 0 2378 191 45 39 chr11 102440902 102440971 -48342582 + MLT2B1 LTR ERVL 441 520 0 2540 156 15 35 chr11 102440971 102441084 -48342469 - L1MB5 LINE L1 -346 5828 5729 322 258 17 58 chr11 102441089 102441209 -48342344 + MIR3 SINE MIR 48 162 -46 219 333 125 0 chr11 102442037 102442157 -48341396 - L2 LINE L2 0 3272 3138 567 195 6 138 chr11 102442168 102442260 -48341293 - MIR SINE MIR -21 241 181 1729 178 56 34 chr11 102442260 102442615 -48340938 + MLT1A1 LTR MaLR 3 365 0 567 195 6 138 chr11 102442615 102442696 -48340857 - MIR SINE MIR -81 181 91 2276 104 10 0 chr11 102443831 102444139 -48339414 + AluSp SINE Alu 2 312 -1 694 280 83 54 chr11 102444262 102444708 -48338845 - L2 LINE L2 -4 3309 2851 258 32 0 0 chr11 102444833 102444864 -48338689 + (CAT)n Simple_repeat Simple_repeat 3 33 0 565 329 39 4 chr11 102444864 102445098 -48338455 - L2 LINE L2 -472 2842 2601 1761 235 62 13 chr11 102445319 102445966 -48337587 - MER21B LTR ERV1 -129 734 12 360 328 40 8 chr11 102446170 102446295 -48337258 + L2 LINE L2 3144 3272 0 427 65 65 0 chr11 102446440 102446502 -48337051 - MADE1 DNA Mariner -14 66 1 185 316 132 26 chr11 102446588 102446702 -48336851 + MIR SINE MIR 14 139 -123 717 279 87 4 chr11 102447830 102448059 -48335494 + MIR SINE MIR 1 248 -14 2716 178 39 31 chr11 102448242 102448758 -48334795 - MLT2B1 LTR ERVL 0 520 1 295 250 0 34 chr11 102448779 102448867 -48334686 - MIR SINE MIR 0 262 178 677 243 46 0 chr11 102449141 102449293 -48334260 - MIR SINE MIR -79 183 25 312 263 202 24 chr11 102449291 102449504 -48334049 - MIR SINE MIR -2 260 10 * 819 173 0 8 chr11 102449888 102450015 -48333538 - FLAM_C SINE Alu -16 127 2 218 336 107 46 chr11 102450791 102450922 -48332631 - L2 LINE L2 0 3272 3134 1874 92 85 28 chr11 102451014 102451297 -48332256 + AluY SINE Alu 1 299 -12 451 289 72 40 chr11 102451385 102451662 -48331891 - L2 LINE L2 -411 2903 2618 912 166 59 30 chr11 102451664 102451861 -48331692 + L1M1 LINE L1 5482 5683 -621 3737 168 43 5 chr11 102451951 102452619 -48330934 + L1MC1 LINE L1 5637 6330 -3 590 311 132 32 chr11 102452649 102453087 -48330466 - L2 LINE L2 -685 2629 2148 206 61 0 30 chr11 102453144 102453177 -48330376 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 342 198 238 0 chr11 102453211 102453312 -48330241 + MER69A DNA AcHobo 53 177 0 199 78 16 78 chr11 102553995 102554059 -48229494 + (CACAA)n Simple_repeat Simple_repeat 5 64 0 21 43 0 0 chr11 102554252 102554275 -48229278 + GC_rich Low_complexity Low_complexity 1 23 0 186 125 0 0 chr11 102554522 102554546 -48229007 + (G)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr11 102554913 102554933 -48228620 + (C)n Simple_repeat Simple_repeat 1 20 0 31 0 0 0 chr11 102555051 102555082 -48228471 + GC_rich Low_complexity Low_complexity 1 31 0 233 326 0 0 chr11 102555127 102555176 -48228377 + C-rich Low_complexity Low_complexity 1 49 0 22 77 0 0 chr11 102555224 102555250 -48228303 + GC_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr11 102555289 102555310 -48228243 + AT_rich Low_complexity Low_complexity 1 21 0 24 100 0 0 chr11 102555364 102555394 -48228159 + GC_rich Low_complexity Low_complexity 1 30 0 23 74 0 0 chr11 102555682 102555709 -48227844 + AT_rich Low_complexity Low_complexity 1 27 0 21 80 0 0 chr11 102556110 102556135 -48227418 + GC_rich Low_complexity Low_complexity 1 25 0 23 167 0 0 chr11 102556162 102556204 -48227349 + GC_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr11 102556828 102556849 -48226704 + GC_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr11 102556889 102556918 -48226635 + GC_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr11 102556965 102556991 -48226562 + GC_rich Low_complexity Low_complexity 1 26 0 189 0 0 0 chr11 102558665 102558686 -48224867 + (C)n Simple_repeat Simple_repeat 1 21 0 21 111 0 0 chr11 102558760 102558787 -48224766 + AT_rich Low_complexity Low_complexity 1 27 0 28 33 0 0 chr11 102558823 102558853 -48224700 + GC_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr11 102559626 102559649 -48223904 + GC_rich Low_complexity Low_complexity 1 23 0 219 214 36 45 chr11 102560088 102560200 -48223353 + (CACAC)n Simple_repeat Simple_repeat 1 111 0 276 50 100 0 chr11 102560200 102560260 -48223293 + (CACCC)n Simple_repeat Simple_repeat 3 68 0 24 71 0 0 chr11 102561353 102561381 -48222172 + GC_rich Low_complexity Low_complexity 1 28 0 31 30 0 0 chr11 102561886 102561919 -48221634 + GC_rich Low_complexity Low_complexity 1 33 0 30 83 0 0 chr11 102561971 102562007 -48221546 + GC_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr11 102562068 102562098 -48221455 + GC_rich Low_complexity Low_complexity 1 30 0 11336 172 17 11 chr11 102562583 102564891 -48218662 - L1PA13 LINE L1 -2464 4333 1999 198 0 0 0 chr11 102565113 102565135 -48218418 + (CAT)n Simple_repeat Simple_repeat 3 24 0 1206 241 71 55 chr11 102566684 102567166 -48216387 + MER39 LTR ERV1 1 683 0 8043 10 2 1 chr11 102567356 102568547 -48215006 + L1PA2 LINE L1 4962 6153 -2 391 208 25 101 chr11 102568547 102568617 -48214936 - L1MA10 LINE L1 -12 6322 6253 1872 222 88 61 chr11 102568617 102569306 -48214247 - L1ME1 LINE L1 -58 6108 5401 1129 52 15 0 chr11 102569310 102569446 -48214107 - AluY SINE Alu -169 142 5 1146 190 75 61 chr11 102569449 102569860 -48213693 - pTR5 LTR ERV1 -1279 1159 743 406 181 29 38 chr11 102569860 102569965 -48213588 - L1ME1 LINE L1 -763 5403 5300 21 0 0 0 chr11 102571051 102571072 -48212481 + AT_rich Low_complexity Low_complexity 1 21 0 31 58 0 0 chr11 102571121 102571173 -48212380 + AT_rich Low_complexity Low_complexity 1 52 0 23 33 0 0 chr11 102571244 102571274 -48212279 + AT_rich Low_complexity Low_complexity 1 30 0 1017 302 103 18 chr11 102572148 102572645 -48210908 + L2 LINE L2 2197 2735 -579 359 293 0 0 chr11 102572698 102572780 -48210773 + L2 LINE L2 2953 3034 -279 356 234 37 65 chr11 102572859 102572966 -48210587 + L2 LINE L2 3210 3313 0 1116 253 124 45 chr11 102573232 102573592 -48209961 + MLT1C LTR MaLR 6 407 -60 2270 85 14 3 chr11 102573592 102573887 -48209666 - AluSg SINE Alu -12 298 1 1116 253 124 45 chr11 102573887 102573953 -48209600 + MLT1C LTR MaLR 407 466 -1 546 260 139 74 chr11 102574302 102575039 -48208514 + HAL1 LINE L1 1438 2332 -175 740 240 48 39 chr11 102575147 102575355 -48208198 + MER58A DNA MER1_type 1 210 -14 23 0 0 0 chr11 102575453 102575476 -48208077 + AT_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr11 102577119 102577164 -48206389 + AT_rich Low_complexity Low_complexity 1 45 0 228 284 49 25 chr11 102577443 102577524 -48206029 - MLT1J2 LTR MaLR -7 443 361 * 607 299 148 24 chr11 102577506 102577837 -48205716 - MLT1J1 LTR MaLR -74 372 1 257 212 71 20 chr11 102579031 102579130 -48204423 - MLT1J1 LTR MaLR 0 446 343 530 244 109 57 chr11 102579200 102579393 -48204160 - MLT1J1 LTR MaLR -241 205 3 1133 206 61 87 chr11 102579436 102579746 -48203807 + AluJo SINE Alu 1 302 0 798 184 17 46 chr11 102579822 102579996 -48203557 - LTR40a LTR ERVL -4 515 347 1936 204 125 30 chr11 102579999 102580056 -48203497 - MER77 LTR ERV1 0 605 555 2352 82 3 20 chr11 102580056 102580360 -48203193 + AluSp SINE Alu 1 299 -14 1936 204 125 30 chr11 102580360 102580798 -48202755 - MER77 LTR ERV1 -50 555 63 1302 216 76 76 chr11 102580821 102581214 -48202339 - MER77 LTR ERV1 -212 393 1 623 251 30 18 chr11 102581308 102581475 -48202078 - LTR40c LTR ERVL -296 169 1 851 306 77 24 chr11 102581593 102582047 -48201506 + L1MCc LINE L1 32 509 -5914 2249 109 0 0 chr11 102583130 102583434 -48200119 + AluSx SINE Alu 1 304 -8 1647 152 65 4 chr11 102583495 102583772 -48199781 + AluSq SINE Alu 1 294 -19 2116 243 60 88 chr11 102584026 102585105 -48198448 + L1MC4a LINE L1 5254 6302 -1506 1573 199 74 11 chr11 102585121 102585487 -48198066 - L1MB7 LINE L1 -19 6165 5777 2691 118 35 13 chr11 102585803 102586201 -48197352 + MER1A DNA MER1_type 123 529 0 203 237 13 26 chr11 102586704 102586780 -48196773 + T-rich Low_complexity Low_complexity 3 77 0 626 326 87 60 chr11 102587747 102588609 -48194944 - L2 LINE L2 -67 3205 2327 25 0 0 0 chr11 102588643 102588668 -48194885 + AT_rich Low_complexity Low_complexity 1 25 0 393 255 101 13 chr11 102589034 102589183 -48194370 + MLT1H LTR MaLR 383 544 -5 521 305 37 4 chr11 102590570 102590816 -48192737 + L1M4 LINE L1 2960 3213 -2933 1212 132 0 0 chr11 102591270 102591437 -48192116 - AluJb SINE Alu -23 289 123 421 269 109 16 chr11 102591669 102591925 -48191628 + L1ME4a LINE L1 5840 6119 -2 1129 87 52 12 chr11 102592080 102592253 -48191300 - L1PA13 LINE L1 0 6163 5984 2355 66 0 10 chr11 102592476 102592777 -48190776 - AluY SINE Alu -13 298 1 280 238 124 52 chr11 102593062 102593233 -48190320 + L1P LINE L1 4919 5102 -1044 324 339 66 8 chr11 102593409 102593651 -48189902 + L1MC/D LINE L1 5312 5567 -675 900 85 34 0 chr11 102594257 102594434 -48189119 + L1PA13 LINE L1 5939 6163 0 1699 153 3 37 chr11 102594503 102594803 -48188750 - AluJb SINE Alu -11 301 12 1460 155 38 0 chr11 102595432 102595696 -48187857 - L1PA16 LINE L1 -7 6159 5886 236 303 11 0 chr11 102596364 102596453 -48187100 + MER113 DNA MER1_type? 1 90 -431 1915 142 0 33 chr11 102597890 102598193 -48185360 + AluSq SINE Alu 1 293 -20 858 39 0 0 chr11 102598873 102598975 -48184578 - AluY SINE Alu -5 306 205 21 36 0 0 chr11 102600745 102600773 -48182780 + AT_rich Low_complexity Low_complexity 1 28 0 238 274 0 14 chr11 102601632 102601705 -48181848 - LTR67 LTR ERVL -1 556 485 1852 107 12 83 chr11 102601844 102602038 -48181515 - AluSg SINE Alu -6 304 141 225 0 0 0 chr11 102602038 102602063 -48181490 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1852 107 12 83 chr11 102602063 102602195 -48181358 - AluSg SINE Alu -169 141 1 351 306 36 51 chr11 102602282 102602478 -48181075 - MLT1K LTR MaLR -394 194 2 202 224 0 20 chr11 102603589 102603638 -48179915 + GA-rich Low_complexity Low_complexity 2 49 0 304 309 170 55 chr11 102604110 102604440 -48179113 + L1M2 LINE L1 779 1146 -5703 467 248 23 16 chr11 102606255 102606384 -48177169 - L2 LINE L2 0 3313 3184 315 323 94 21 chr11 102607096 102607288 -48176265 - L3b LINE CR1 -111 1472 1267 224 162 0 81 chr11 102609253 102609327 -48174226 + T-rich Low_complexity Low_complexity 1 68 0 192 299 91 26 chr11 102609427 102609504 -48174049 - MIR SINE MIR -105 103 22 188 274 192 62 chr11 102609829 102609975 -48173578 - L2 LINE L2 -17 3296 3132 183 80 0 0 chr11 102610862 102610887 -48172666 + (CATA)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr11 102611450 102611471 -48172082 + AT_rich Low_complexity Low_complexity 1 21 0 616 239 176 10 chr11 102612183 102612576 -48170977 + L1ME LINE L1 5149 5609 -553 292 280 27 0 chr11 102612597 102612672 -48170881 + MER21B LTR ERV1 12 88 -775 26 0 0 0 chr11 102612691 102612717 -48170836 + AT_rich Low_complexity Low_complexity 1 26 0 310 192 26 39 chr11 102612728 102612806 -48170747 + L1ME LINE L1 5599 5675 -495 4602 221 129 58 chr11 102612814 102617082 -48166471 + L1M2 LINE L1 1 4302 -2804 1272 199 12 9 chr11 102617063 102617404 -48166149 + L1M2 LINE L1 5740 6250 -856 * 338 70 0 0 chr11 102617409 102617452 -48166101 + AluSp SINE Alu 131 173 -130 784 171 0 0 chr11 102617502 102617642 -48165911 + AluJb SINE Alu 173 312 0 2190 144 15 20 chr11 102617642 102618045 -48165508 + L1M2 LINE L1 6247 6647 -604 1735 179 10 7 chr11 102618195 102618503 -48165050 - AluJb SINE Alu -3 309 1 257 333 42 10 chr11 102619302 102619398 -48164155 + MIR SINE MIR 49 147 -115 2861 16 0 0 chr11 102619704 102620018 -48163535 + AluYb8 SINE Alu 1 314 -4 297 20 39 20 chr11 102620136 102620187 -48163366 + (TAAAAA)n Simple_repeat Simple_repeat 2 53 0 2232 267 63 17 chr11 102620902 102622437 -48161116 + L1MC/D LINE L1 1503 3278 -3148 506 265 170 9 chr11 102624390 102624620 -48158933 + L1MC/D LINE L1 5723 5989 -2099 960 222 126 0 chr11 102624757 102624964 -48158589 + Tigger7 DNA MER2_type 1 233 -317 297 0 0 0 chr11 102624974 102625007 -48158546 + (TAA)n Simple_repeat Simple_repeat 2 34 0 507 171 0 12 chr11 102625008 102625090 -48158463 + Tigger7 DNA MER2_type 2406 2486 -1 1710 175 3 20 chr11 102625375 102625678 -48157875 - AluJb SINE Alu -14 298 1 2394 70 0 49 chr11 102626137 102626464 -48157089 + AluY SINE Alu 1 311 0 9210 79 10 2 chr11 102627007 102629036 -48154517 + L1PA7 LINE L1 4115 6154 0 279 300 55 36 chr11 102629597 102629707 -48153846 - L2 LINE L2 -181 3091 2980 236 292 15 80 chr11 102630063 102630200 -48153353 + L2 LINE L2 2911 3038 -234 541 299 35 0 chr11 102630549 102630693 -48152860 - L2 LINE L2 -1446 1868 1720 406 245 135 25 chr11 102630788 102630951 -48152602 - MIR SINE MIR -10 252 72 459 0 0 0 chr11 102631488 102631539 -48152014 + (TG)n Simple_repeat Simple_repeat 2 52 0 258 323 32 0 chr11 102631949 102632042 -48151511 - MIR SINE MIR -16 246 151 888 179 0 0 chr11 102632060 102632205 -48151348 - FRAM SINE Alu -22 154 10 232 259 17 0 chr11 102632223 102632281 -48151272 - MIR SINE MIR -64 144 86 773 245 115 56 chr11 102632312 102632398 -48151155 - MER45C DNA AcHobo -628 953 874 2197 70 40 0 chr11 102632398 102632684 -48150869 + AluSp SINE Alu 14 297 -16 773 245 115 56 chr11 102632684 102632866 -48150687 - MER45C DNA AcHobo -707 874 669 704 223 104 30 chr11 102632866 102633068 -48150485 - MER45C DNA AcHobo -686 267 51 2837 3 0 0 chr11 102633918 102634215 -48149338 - AluYa5 SINE Alu -14 297 1 1214 200 74 77 chr11 102634684 102635074 -48148479 - MLT1B LTR MaLR -1 389 1 706 218 45 64 chr11 102635220 102635486 -48148067 + L1M4 LINE L1 4807 5067 -1079 * 9933 158 25 4 chr11 102635485 102638372 -48145181 + L1MA3 LINE L1 3349 6295 -10 8960 102 83 14 chr11 102638474 102639949 -48143604 + MER4A-int LTR ERV1 4094 5671 -927 1562 143 12 4 chr11 102639945 102640196 -48143357 + MER4A-int LTR ERV1 6344 6596 -2 * 609 137 20 10 chr11 102640205 102640307 -48143246 + MER4A LTR ERV1 2 104 -560 * 1699 136 171 76 chr11 102640303 102640672 -48142881 + MER4A LTR ERV1 261 664 0 234 354 71 0 chr11 102640759 102640886 -48142667 + L2 LINE L2 3137 3272 0 317 329 24 29 chr11 102641056 102641226 -48142327 - MLT1K LTR MaLR -123 465 297 1947 143 0 10 chr11 102641478 102641771 -48141782 - AluJo SINE Alu -22 290 1 486 306 38 29 chr11 102641774 102642064 -48141489 - MLT1L LTR MaLR -158 457 101 231 114 0 0 chr11 102642342 102642377 -48141176 + (A)n Simple_repeat Simple_repeat 1 35 0 2421 67 0 0 chr11 102642377 102642660 -48140893 - AluY SINE Alu -20 291 9 1264 116 87 21 chr11 102642661 102642902 -48140651 - MSTA LTR MaLR -171 257 1 3471 184 19 15 chr11 102643159 102643827 -48139726 + LTR51 LTR ERV1 1 671 0 1763 170 4 0 chr11 102643870 102644146 -48139407 - AluJb SINE Alu -33 279 3 4020 203 22 49 chr11 102644235 102644552 -48139001 + MER21B LTR ERV1 15 339 -524 1628 145 0 4 chr11 102644552 102644807 -48138746 + AluJb SINE Alu 44 297 -15 4020 203 22 49 chr11 102644807 102645347 -48138206 + MER21B LTR ERV1 339 849 -14 811 151 8 0 chr11 102645352 102645478 -48138075 + AluSq/x SINE Alu 6 132 -181 317 215 118 0 chr11 102645651 102645744 -48137809 - Charlie7 DNA MER1_type -2507 105 2 561 147 60 35 chr11 102645866 102645982 -48137571 + LTR52 LTR ERVL 1 119 -302 679 139 130 0 chr11 102645982 102646097 -48137456 + FLAM_C SINE Alu 2 131 -12 1292 165 108 37 chr11 102646099 102646323 -48137230 + LTR52 LTR ERVL 102 354 -67 1793 152 3 39 chr11 102646323 102646632 -48136921 - AluJo SINE Alu -14 298 1 1292 165 108 37 chr11 102646632 102646704 -48136849 + LTR52 LTR ERVL 354 419 -2 246 136 197 0 chr11 102646736 102646802 -48136751 + L2 LINE L2 3117 3195 -118 202 267 167 0 chr11 102646842 102646932 -48136621 - L2 LINE L2 -26 3287 3183 21 36 0 0 chr11 102647012 102647040 -48136513 + AT_rich Low_complexity Low_complexity 1 28 0 683 149 18 0 chr11 102647488 102647602 -48135951 - FLAM_C SINE Alu -25 118 3 819 146 0 44 chr11 102648170 102648307 -48135246 - FLAM_C SINE Alu -2 131 1 208 122 0 49 chr11 102648339 102648380 -48135173 + (TTAA)n Simple_repeat Simple_repeat 4 42 0 618 267 105 10 chr11 102648831 102649127 -48134426 - L1MC4a LINE L1 -1870 5938 5615 2218 111 0 0 chr11 102649142 102649439 -48134114 + AluSx SINE Alu 6 302 -10 424 211 138 9 chr11 102649571 102649680 -48133873 - FLAM_A SINE Alu -7 126 4 2246 117 7 0 chr11 102649851 102650159 -48133394 + AluSq SINE Alu 1 310 -3 34 24 0 0 chr11 102650402 102650443 -48133110 + AT_rich Low_complexity Low_complexity 1 41 0 5134 64 24 1 chr11 102650443 102651098 -48132455 - L1PA7 LINE L1 -4 6150 5481 328 125 0 0 chr11 102651098 102651146 -48132407 - AluJ/FRAM SINE Alu -25 277 230 * 3005 192 55 50 chr11 102651145 102651963 -48131590 - MER52A LTR ERV1 -933 822 1 648 128 0 0 chr11 102651963 102652057 -48131496 - FLAM_C SINE Alu -38 105 12 22 35 0 0 chr11 102652154 102652183 -48131370 + AT_rich Low_complexity Low_complexity 1 29 0 1932 159 3 0 chr11 102652267 102652562 -48130991 + AluSx SINE Alu 1 296 -16 1559 182 10 40 chr11 102653590 102653892 -48129661 - AluJo SINE Alu -14 298 6 2236 127 0 3 chr11 102653902 102654209 -48129344 - AluSx SINE Alu -6 306 1 1703 136 0 47 chr11 102654318 102654597 -48128956 - AluSx SINE Alu -8 304 39 2497 68 0 16 chr11 102655054 102655362 -48128191 + AluSc SINE Alu 1 303 -6 21 0 0 0 chr11 102656776 102656797 -48126756 + AT_rich Low_complexity Low_complexity 1 21 0 2069 100 21 7 chr11 102656824 102657103 -48126450 + AluSx SINE Alu 11 293 -19 1777 46 46 37 chr11 102657104 102657345 -48126208 + AluY SINE Alu 60 302 -9 237 275 22 11 chr11 102657503 102657594 -48125959 + GA-rich Low_complexity Low_complexity 4 95 0 532 171 0 0 chr11 102657722 102657804 -48125749 - AluSg/x SINE Alu -158 152 71 2201 114 0 43 chr11 102657947 102658272 -48125281 + AluSx SINE Alu 1 311 -1 2465 80 0 16 chr11 102658389 102658701 -48124852 + AluSc SINE Alu 1 307 -2 180 302 0 16 chr11 102658780 102658843 -48124710 - MIR3 SINE MIR -6 202 141 312 254 201 8 chr11 102659008 102659142 -48124411 + MIR SINE MIR 29 188 -74 361 266 18 0 chr11 102660084 102660193 -48123360 + L1ME3 LINE L1 5835 5945 -217 759 227 13 0 chr11 102660204 102660358 -48123195 + L1ME3 LINE L1 6000 6155 -7 756 150 23 30 chr11 102660423 102660556 -48122997 - FLAM_C SINE Alu -1 132 1 1612 159 6 78 chr11 102660563 102660884 -48122669 - AluJb SINE Alu -6 306 9 2345 97 0 0 chr11 102660929 102661228 -48122325 - AluSg SINE Alu -11 299 1 2017 172 0 0 chr11 102661230 102661538 -48122015 - AluSx SINE Alu -4 308 1 760 181 0 0 chr11 102661645 102661778 -48121775 + FLAM_C SINE Alu 1 133 0 23 33 0 0 chr11 102662414 102662444 -48121109 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 102662938 102662967 -48120586 + AT_rich Low_complexity Low_complexity 1 29 0 720 150 58 8 chr11 102662970 102663090 -48120463 - FLAM_C SINE Alu -17 126 1 2197 101 3 3 chr11 102664106 102664393 -48119160 - AluSx SINE Alu -25 287 1 3629 189 62 48 chr11 102664440 102665396 -48118157 + LTR5 LTR ERVK 1 969 0 452 140 112 0 chr11 102665444 102665551 -48118002 - L1MC4 LINE L1 0 8042 7924 446 248 8 8 chr11 102666602 102666723 -48116830 + LTR28 LTR ERV1 900 1020 0 329 169 0 0 chr11 102666723 102666782 -48116771 + Alu SINE Alu 243 301 -1 2257 107 0 7 chr11 102666792 102667102 -48116451 + AluSx SINE Alu 1 308 -4 245 167 37 19 chr11 102667102 102667156 -48116397 + MER45B DNA AcHobo 719 773 -267 540 200 0 0 chr11 102667158 102667248 -48116305 + MER45B DNA AcHobo 951 1040 0 2158 65 0 4 chr11 102667543 102667805 -48115748 + AluSp SINE Alu 36 296 -17 270 179 77 0 chr11 102669452 102669530 -48114023 + Looper DNA T2_type 230 313 -1245 2874 269 108 24 chr11 102669732 102670980 -48112573 - L2 LINE L2 -250 3063 1681 2021 133 7 17 chr11 102670980 102671273 -48112280 - AluSx SINE Alu -22 290 1 2874 269 108 24 chr11 102671273 102671445 -48112108 - L2 LINE L2 -1632 1681 1525 599 319 21 0 chr11 102671929 102672117 -48111436 + MIR SINE MIR 55 246 -16 5387 66 37 56 chr11 102672975 102673779 -48109774 - SVA Other Other -541 845 57 246 32 0 0 chr11 102673779 102673810 -48109743 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 342 302 60 7 chr11 102673934 102674083 -48109470 - MER103 DNA DNA -2 164 8 207 300 14 14 chr11 102674205 102674275 -48109278 + MIR SINE MIR 79 148 -114 567 246 78 18 chr11 102674597 102674764 -48108789 + MIR SINE MIR 86 262 0 456 321 66 5 chr11 102675809 102676021 -48107532 + MIR SINE MIR 14 238 -24 695 282 136 48 chr11 102676372 102676887 -48106666 - L2 LINE L2 -604 2710 2151 484 286 99 0 chr11 102677821 102677992 -48105561 - MER117 DNA MER1_type -6 191 4 251 180 16 33 chr11 102678508 102678569 -48104984 + MIR3 SINE MIR 14 73 -135 1284 150 41 38 chr11 102678731 102678997 -48104556 + Tigger2a DNA MER2_type 11 277 -157 275 98 98 0 chr11 102678960 102679011 -48104542 - Tigger2 DNA MER2_type -157 2561 2506 * 1223 153 5 0 chr11 102679101 102679291 -48104262 + Tigger2 DNA MER2_type 2528 2718 0 200 337 36 0 chr11 102679309 102679392 -48104161 + MIR SINE MIR 62 147 -61 1342 218 148 35 chr11 102680427 102680881 -48102672 + MLT1D LTR MaLR 1 505 0 541 304 44 17 chr11 102681531 102681710 -48101843 + MIR SINE MIR 8 191 -62 239 240 20 0 chr11 102682760 102682810 -48100743 + GA-rich Low_complexity Low_complexity 2 52 0 869 289 0 9 chr11 102683897 102684122 -48099431 + MER58A DNA MER1_type 1 223 -1 410 320 35 47 chr11 102684232 102684404 -48099149 - L2 LINE L2 -1 3271 3102 335 253 152 19 chr11 102684871 102685029 -48098524 + MIR SINE MIR 57 235 -27 1988 135 38 0 chr11 102685132 102685420 -48098133 - AluSx SINE Alu -13 299 1 573 262 104 20 chr11 102685448 102685650 -48097903 + MIR SINE MIR 10 228 -34 2072 134 0 3 chr11 102686310 102686620 -48096933 + AluSx SINE Alu 1 309 0 415 285 127 18 chr11 102686680 102686845 -48096708 - MIR SINE MIR -44 218 36 344 264 118 18 chr11 102687200 102687310 -48096243 - MIR3 SINE MIR -15 193 73 412 241 23 96 chr11 102687346 102687540 -48096013 - MIR SINE MIR -60 202 24 2195 124 0 0 chr11 102688992 102689283 -48094270 - AluSp SINE Alu -22 291 1 2382 76 0 10 chr11 102689445 102689748 -48093805 - AluY SINE Alu -11 300 1 238 311 14 14 chr11 102690114 102690188 -48093365 + MIR SINE MIR 78 151 -111 2306 130 25 42 chr11 102690689 102691066 -48092487 - MSTB LTR MaLR -2 424 53 1827 116 10 17 chr11 102691066 102691368 -48092185 - L1PA13 LINE L1 0 6163 5864 2306 130 25 42 chr11 102691368 102691421 -48092132 - MSTB LTR MaLR -373 53 1 790 140 98 7 chr11 102691513 102691656 -48091897 + AluJb SINE Alu 134 289 -23 278 317 163 0 chr11 102691740 102691863 -48091690 - MIR SINE MIR -72 190 48 1658 165 69 7 chr11 102692217 102692508 -48091045 + AluJb SINE Alu 1 309 -3 2457 79 3 3 chr11 102692643 102692947 -48090606 + AluSq SINE Alu 1 304 -9 530 163 7 129 chr11 102692966 102693113 -48090440 + MIR SINE MIR 60 188 -74 986 243 25 16 chr11 102693596 102693839 -48089714 + MIR SINE MIR 16 260 -2 1113 203 42 8 chr11 102693991 102694228 -48089325 + MLT1J2 LTR MaLR 1 245 -205 26 64 0 0 chr11 102694678 102694725 -48088828 + AT_rich Low_complexity Low_complexity 1 47 0 29 0 0 0 chr11 102697905 102697934 -48085619 + AT_rich Low_complexity Low_complexity 1 29 0 405 296 108 34 chr11 102697944 102698241 -48085312 - HAL1 LINE L1 -34 2473 2155 560 225 41 35 chr11 102698283 102698452 -48085101 - HAL1b LINE L1 -436 912 743 1801 144 105 0 chr11 102698471 102698776 -48084777 + MER1B DNA MER1_type 1 337 0 624 151 59 0 chr11 102698816 102698935 -48084618 + LTR22 LTR ERVK 1 126 -383 585 221 144 34 chr11 102698928 102699136 -48084417 + LTR22 LTR ERVK 265 495 -14 * 3522 65 6 18 chr11 102699140 102699633 -48083920 - LTR15 LTR ERV1 -6 487 1 954 302 28 30 chr11 102699950 102700039 -48083514 - HAL1 LINE L1 -760 1747 1659 1816 171 0 3 chr11 102700039 102700352 -48083201 + AluJb SINE Alu 1 312 0 954 302 28 30 chr11 102700352 102700754 -48082799 - HAL1 LINE L1 -848 1659 1255 834 155 101 43 chr11 102700779 102700986 -48082567 + MLT1B LTR MaLR 1 219 -171 279 202 0 0 chr11 102700986 102701070 -48082483 + (CA)n Simple_repeat Simple_repeat 1 84 0 2517 187 31 4 chr11 102701082 102701628 -48081925 + Charlie1 DNA MER1_type 1712 2272 -489 4460 106 22 0 chr11 102701629 102702347 -48081206 + L1P LINE L1 4641 5374 -772 2926 205 37 51 chr11 102702353 102703103 -48080450 - MER21B LTR ERV1 -111 752 13 1985 158 3 0 chr11 102703107 102703404 -48080149 - AluSx SINE Alu -14 298 1 1235 156 45 39 chr11 102703430 102703764 -48079789 + Charlie1 DNA MER1_type 2414 2749 -12 472 297 36 0 chr11 102704312 102704450 -48079103 + L2 LINE L2 3171 3313 0 1416 188 15 38 chr11 102705554 102705954 -48077599 - Charlie5 DNA MER1_type 0 2624 2234 468 195 93 8 chr11 102705958 102706076 -48077477 - MER3 DNA MER1_type -42 167 40 253 79 0 0 chr11 102706794 102706832 -48076721 - MLT2A1 LTR ERVL 0 444 407 413 213 0 75 chr11 102707361 102707455 -48076098 - L2 LINE L2 -2 3270 3184 228 316 109 57 chr11 102707499 102707692 -48075861 - L3 LINE CR1 -23 1554 1352 306 258 32 54 chr11 102707781 102707874 -48075679 + L2 LINE L2 3187 3277 -36 769 169 8 15 chr11 102707908 102708038 -48075515 - FLAM_C SINE Alu -2 131 3 199 361 116 7 chr11 102708168 102708323 -48075230 - MIR SINE MIR -27 235 64 660 247 128 89 chr11 102708628 102709113 -48074440 + LTR33A LTR ERVL 20 523 0 459 187 187 8 chr11 102709288 102709422 -48074131 - MLT1J2 LTR MaLR -262 188 31 468 256 178 0 chr11 102709822 102709951 -48073602 + MER5A DNA MER1_type 37 188 -1 1384 195 87 14 chr11 102710086 102710373 -48073180 - AluJb SINE Alu -1 311 4 259 181 28 56 chr11 102710441 102710513 -48073040 + GA-rich Low_complexity Low_complexity 4 73 0 348 83 0 0 chr11 102711404 102711452 -48072101 + (TG)n Simple_repeat Simple_repeat 1 48 0 1726 122 48 3 chr11 102711751 102712046 -48071507 - L1MC2 LINE L1 -10 6334 6027 615 163 81 6 chr11 102713371 102713531 -48070022 + MER53 DNA DNA 4 175 -14 1195 153 8 42 chr11 102713535 102713797 -48069756 - L1MB4 LINE L1 0 6180 5928 1572 162 27 14 chr11 102714054 102714351 -48069202 + L1MB1 LINE L1 5863 6163 -5 230 343 14 0 chr11 102714564 102714634 -48068919 + L3 LINE CR1 1450 1520 -57 287 348 37 0 chr11 102714687 102714851 -48068702 - LTR33 LTR ERVL -57 464 295 545 140 76 13 chr11 102715143 102715300 -48068253 - MER33 DNA MER1_type -22 302 136 24 0 0 0 chr11 102715307 102715331 -48068222 + AT_rich Low_complexity Low_complexity 1 24 0 681 131 103 1 chr11 102715353 102715491 -48068062 - MER33 DNA MER1_type -250 74 1 1072 198 141 48 chr11 102715595 102716040 -48067513 - L1ME3A LINE L1 -5 6165 5665 2051 169 71 49 chr11 102716976 102717352 -48066201 + LTR44 LTR ERV1 1 392 -127 2076 129 7 35 chr11 102717352 102717662 -48065891 + AluSx SINE Alu 1 301 -11 2051 169 71 49 chr11 102717662 102717793 -48065760 + LTR44 LTR ERV1 392 519 0 1769 157 143 3 chr11 102718620 102718970 -48064583 + MSTA LTR MaLR 30 428 0 3290 174 89 71 chr11 102718970 102719017 -48064536 + LOR1-int LTR ERV1 896 941 -5657 1559 201 7 0 chr11 102719017 102719290 -48064263 + AluJo SINE Alu 14 288 -24 3290 174 89 71 chr11 102719290 102719305 -48064248 + LOR1-int LTR ERV1 941 954 -5644 210 71 0 0 chr11 102719305 102719333 -48064220 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 3290 174 89 71 chr11 102719333 102719777 -48063776 + LOR1-int LTR ERV1 954 1389 -5209 184 29 0 57 chr11 102719777 102719812 -48063741 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 3290 174 89 71 chr11 102719812 102720634 -48062919 + LOR1-int LTR ERV1 1389 2195 -4403 1728 170 24 0 chr11 102720634 102720922 -48062631 - AluJb SINE Alu -17 295 1 3290 174 89 71 chr11 102720922 102721196 -48062357 + LOR1-int LTR ERV1 2195 3730 -2868 374 132 0 0 chr11 102721238 102721303 -48062250 + Alu SINE Alu 238 294 -8 335 102 0 143 chr11 102721324 102721422 -48062131 - MER4-int LTR ERV1 -3150 3448 3365 1207 204 44 59 chr11 102721463 102722143 -48061410 + LOR1-int LTR ERV1 3728 4419 -1912 1203 264 59 51 chr11 102722136 102722536 -48061017 + LOR1-int LTR ERV1 4745 5153 -2967 * 2127 128 7 7 chr11 102722536 102722832 -48060721 + AluSx SINE Alu 1 296 -16 1203 264 59 51 chr11 102722832 102723079 -48060474 + LOR1-int LTR ERV1 5153 5397 -2723 1935 149 41 24 chr11 102723117 102723486 -48060067 - THE1C LTR MaLR 0 375 1 2279 158 98 21 chr11 102723715 102724197 -48059356 + LTR44 LTR ERV1 1 519 0 310 295 57 9 chr11 102725543 102725648 -48057905 - L2 LINE L2 -9 3263 3154 322 213 62 25 chr11 102725732 102725812 -48057741 - MIR SINE MIR -66 196 114 260 270 0 0 chr11 102725818 102725892 -48057661 - Charlie8 DNA MER1_type 0 2417 2344 333 340 100 15 chr11 102726737 102726937 -48056616 + L1MC/D LINE L1 5310 5526 -833 186 43 0 0 chr11 102727045 102727068 -48056485 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1898 108 0 4 chr11 102727068 102727317 -48056236 - AluSx SINE Alu -28 284 37 28 29 0 0 chr11 102727365 102727400 -48056153 + AT_rich Low_complexity Low_complexity 1 35 0 486 311 73 0 chr11 102727689 102727853 -48055700 - MIR SINE MIR -22 240 65 293 359 58 39 chr11 102727871 102728130 -48055423 - L2 LINE L2 -180 3092 2829 227 242 30 15 chr11 102728854 102728920 -48054633 - L2 LINE L2 0 3313 3247 843 133 30 59 chr11 102729781 102729984 -48053569 - Charlie1 DNA MER1_type -6 2755 2559 908 100 0 0 chr11 102730005 102730135 -48053418 - L1PA7 LINE L1 -4 6150 6021 491 316 62 14 chr11 102730499 102730708 -48052845 - MLT1I LTR MaLR -22 387 169 354 143 0 0 chr11 102732173 102732236 -48051317 + (T)n Simple_repeat Simple_repeat 1 63 0 319 232 120 80 chr11 102732390 102732515 -48051038 + L2 LINE L2 3179 3308 -5 231 254 0 0 chr11 102732542 102732601 -48050952 - L1ME LINE L1 -459 5662 5604 200 333 0 0 chr11 102733788 102733839 -48049714 + MER5A DNA MER1_type 7 57 -132 448 193 267 40 chr11 102734247 102734397 -48049156 - MER5A DNA MER1_type -2 187 4 583 251 41 20 chr11 102734409 102734590 -48048963 - MIR SINE MIR -62 146 13 241 344 21 21 chr11 102734825 102734921 -48048632 + MER5A DNA MER1_type 38 133 -56 446 158 0 53 chr11 102734923 102735018 -48048535 - FLAM_A SINE Alu -7 135 46 267 235 0 59 chr11 102735039 102735107 -48048446 + MER5B DNA MER1_type 115 178 0 488 258 157 19 chr11 102735189 102735348 -48048205 + MER5A DNA MER1_type 9 189 0 390 344 21 21 chr11 102735509 102735698 -48047855 - MER5A DNA MER1_type 0 189 1 189 0 0 0 chr11 102735794 102735815 -48047738 + (T)n Simple_repeat Simple_repeat 1 21 0 213 219 0 0 chr11 102736272 102736313 -48047240 + (CA)n Simple_repeat Simple_repeat 2 42 0 1011 111 7 0 chr11 102736388 102736523 -48047030 + AluSq/x SINE Alu 1 136 -176 43895 32 21 1 chr11 102736623 102742642 -48040911 - L1PA2 LINE L1 -11 6144 3 1919 67 0 13 chr11 102742642 102742881 -48040672 - AluY SINE Alu -11 300 65 24 0 0 0 chr11 102743430 102743454 -48040099 + AT_rich Low_complexity Low_complexity 1 24 0 2681 40 0 0 chr11 102743464 102743766 -48039787 + AluY SINE Alu 1 302 -9 1018 30 0 45 chr11 102743878 102744012 -48039541 + L1PA5 LINE L1 6027 6154 0 4726 124 16 11 chr11 102746191 102746899 -48036654 - MER50 LTR ERV1 -23 711 1 495 249 97 5 chr11 102747935 102748120 -48035433 + L1MC4a LINE L1 5709 5910 -1898 351 0 0 0 chr11 102748129 102748168 -48035385 + (TG)n Simple_repeat Simple_repeat 2 40 0 771 250 51 51 chr11 102748778 102749054 -48034499 + MLT1J LTR MaLR 97 372 -139 367 295 16 24 chr11 102749837 102749999 -48033554 + MER5B DNA MER1_type 1 150 -28 257 286 116 21 chr11 102750033 102750196 -48033357 + MLT1I LTR MaLR 37 215 -194 717 169 15 44 chr11 102750373 102750509 -48033044 + FLAM_C SINE Alu 1 132 -1 399 258 132 5 chr11 102751787 102751977 -48031576 + MIR SINE MIR 49 262 0 1491 182 161 35 chr11 102752152 102752580 -48030973 + MLT1D LTR MaLR 24 505 0 404 192 0 0 chr11 102752586 102752659 -48030894 - MIR SINE MIR -98 164 92 582 236 86 120 chr11 102753047 102753572 -48029981 + MLT1J LTR MaLR 5 511 0 502 323 25 6 chr11 102755137 102755298 -48028255 - MIR3 SINE MIR -31 177 14 296 244 142 31 chr11 102756291 102756418 -48027135 + MIR SINE MIR 14 154 -108 2230 102 0 0 chr11 102759474 102759788 -48023765 + AluSq SINE Alu 1 314 0 2315 115 0 0 chr11 102760043 102760355 -48023198 + AluSx SINE Alu 1 312 0 13752 121 25 97 chr11 102761266 102761385 -48022168 - Tigger1 DNA MER2_type 0 2418 2292 1806 176 3 7 chr11 102761385 102761681 -48021872 + AluJb SINE Alu 1 295 -17 13752 121 25 97 chr11 102761681 102762905 -48020648 - Tigger1 DNA MER2_type -126 2292 982 861 150 0 8 chr11 102762905 102763038 -48020515 + FLAM_C SINE Alu 1 132 -11 13752 121 25 97 chr11 102763038 102763130 -48020423 - Tigger1 DNA MER2_type -1436 982 885 1966 161 6 3 chr11 102763130 102763441 -48020112 + AluSx SINE Alu 1 312 0 13752 121 25 97 chr11 102763441 102764094 -48019459 - Tigger1 DNA MER2_type -1533 885 404 3557 123 6 4 chr11 102764094 102764604 -48018949 - MER9 LTR ERVK 0 511 1 13752 121 25 97 chr11 102764604 102764960 -48018593 - Tigger1 DNA MER2_type -2014 404 24 972 42 0 0 chr11 102764958 102765076 -48018477 - Tigger1 DNA MER2_type -690 1728 1611 * 6038 134 10 3 chr11 102765121 102766378 -48017175 - L1PB2 LINE L1 -2 6149 4885 201 74 0 0 chr11 102767130 102767157 -48016396 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 379 342 22 31 chr11 102767178 102767400 -48016153 - MIR SINE MIR -17 245 26 730 256 57 26 chr11 102768214 102768441 -48015112 - MIR SINE MIR 0 262 29 390 287 130 9 chr11 102768672 102768787 -48014766 - L2 LINE L2 -16 3256 3128 551 136 218 0 chr11 102770228 102770338 -48013215 + FLAM_C SINE Alu 3 136 -7 196 245 0 0 chr11 102771863 102771916 -48011637 - MIR3 SINE MIR -3 205 153 16151 79 52 4 chr11 102771918 102774854 -48008699 + L1PA7 LINE L1 2870 5955 -199 5557 34 0 5 chr11 102774994 102775611 -48007942 + SVA Other Other 773 1386 0 219 239 0 0 chr11 102775920 102775966 -48007587 - MER91A DNA MER1_type -1 189 144 1807 214 97 2 chr11 102776057 102776478 -48007075 + MLT1C LTR MaLR 6 466 -1 239 283 67 25 chr11 102776479 102776599 -48006954 - MER91A DNA MER1_type -71 125 1 1689 153 49 7 chr11 102777352 102777639 -48005914 + AluJo SINE Alu 7 305 -7 1274 251 65 13 chr11 102777881 102778268 -48005285 - MER57B LTR ERV1 -27 407 1 2082 207 49 164 chr11 102778708 102779282 -48004271 + L1MC3 LINE L1 6259 6787 -998 473 193 11 23 chr11 102779290 102779378 -48004175 + MER21B LTR ERV1 1 87 -776 1392 190 87 134 chr11 102779397 102779928 -48003625 + MER21B LTR ERV1 13 518 -345 239 300 57 0 chr11 102779928 102779998 -48003555 - L1 LINE L1 -2331 3815 3742 880 232 83 12 chr11 102780186 102780427 -48003126 + MER21B LTR ERV1 548 805 -58 3064 158 147 108 chr11 102780456 102780749 -48002804 + L1MC3 LINE L1 6791 7071 -714 374 211 44 33 chr11 102780749 102780839 -48002714 + MLT1F1 LTR MaLR 43 133 -434 3064 158 147 108 chr11 102780839 102781413 -48002140 + L1MC3 LINE L1 7071 7785 0 234 301 143 41 chr11 102781891 102782087 -48001466 + L2 LINE L2 3056 3271 -1 184 234 32 48 chr11 102782737 102782861 -48000692 - L2 LINE L2 -328 2985 2864 1557 168 8 4 chr11 102783056 102783318 -48000235 - AluJb SINE Alu -17 295 33 710 273 64 37 chr11 102783631 102783928 -47999625 - L2 LINE L2 0 3313 3009 27 0 0 0 chr11 102783989 102784016 -47999537 + AT_rich Low_complexity Low_complexity 1 27 0 1983 143 0 26 chr11 102784016 102784323 -47999230 - AluJo SINE Alu -9 303 5 21 57 0 0 chr11 102784330 102784365 -47999188 + AT_rich Low_complexity Low_complexity 1 35 0 241 306 102 20 chr11 102785221 102785319 -47998234 + MIR SINE MIR 17 122 -140 421 336 90 16 chr11 102785417 102785780 -47997773 + L2 LINE L2 2593 3091 -181 279 0 0 0 chr11 102786229 102786260 -47997293 + (CA)n Simple_repeat Simple_repeat 2 32 0 500 278 112 24 chr11 102786425 102786630 -47996923 - L2 LINE L2 -172 3141 2919 566 302 64 38 chr11 102786687 102787187 -47996366 - L1MEc LINE L1 -5617 779 267 1812 240 98 19 chr11 102787266 102787832 -47995721 - L2 LINE L2 -598 2716 2099 2425 125 28 14 chr11 102787832 102788191 -47995362 - THE1B LTR MaLR 0 364 1 1812 240 98 19 chr11 102788191 102788219 -47995334 - L2 LINE L2 -1215 2099 2075 431 369 34 17 chr11 102788456 102788635 -47994918 + MIR3 SINE MIR 4 185 -23 5558 176 39 19 chr11 102788951 102789425 -47994128 - L1MC1 LINE L1 0 6613 6150 2455 82 0 0 chr11 102789425 102789730 -47993823 - AluY SINE Alu -6 305 1 5558 176 39 19 chr11 102789730 102790459 -47993094 - L1MC1 LINE L1 -463 6150 5370 2410 66 0 28 chr11 102790459 102790779 -47992774 - AluY SINE Alu 0 311 1 5558 176 39 19 chr11 102790779 102791291 -47992262 - L1MC1 LINE L1 -1243 5370 4870 5254 157 8 16 chr11 102791352 102792461 -47991092 + L1PB3 LINE L1 4476 5570 -584 2883 16 0 3 chr11 102792461 102792780 -47990773 + AluYb8 SINE Alu 1 318 0 5254 157 8 16 chr11 102792780 102793361 -47990192 + L1PB3 LINE L1 5570 6154 0 1000 232 10 3 chr11 102793390 102793683 -47989870 - L1MC1 LINE L1 -1568 4858 4564 * 10130 182 51 62 chr11 102793677 102794705 -47988848 - L1MC1 LINE L1 -1800 4626 3587 2109 144 0 0 chr11 102794705 102795004 -47988549 - AluSx SINE Alu -13 299 1 10130 182 51 62 chr11 102795004 102795036 -47988517 - L1MC1 LINE L1 -2839 3587 3556 3356 42 7 0 chr11 102795036 102795443 -47988110 - L1PA5 LINE L1 -6 6148 5739 10130 182 51 62 chr11 102795443 102797039 -47986514 - L1MC1 LINE L1 -2870 3556 1943 2096 139 0 3 chr11 102797039 102797334 -47986219 + AluSx SINE Alu 1 294 -18 10130 182 51 62 chr11 102797334 102799341 -47984212 - L1MC1 LINE L1 -4483 1943 19 1304 208 283 20 chr11 102799341 102799902 -47983651 - LTR50 LTR ERVL -36 759 31 2249 64 7 4 chr11 102799902 102800183 -47983370 + AluY SINE Alu 30 311 0 1304 208 283 20 chr11 102800183 102800218 -47983335 - LTR50 LTR ERVL -764 31 6 184 344 49 0 chr11 102800483 102800544 -47983009 - L2 LINE L2 -2 3311 3248 538 258 126 18 chr11 102802540 102802707 -47980846 + MIR SINE MIR 68 252 -10 468 279 52 43 chr11 102802655 102802888 -47980665 - MIR SINE MIR -16 246 12 * 651 250 14 14 chr11 102803114 102803262 -47980291 - MIR SINE MIR -102 160 13 404 253 121 33 chr11 102803375 102803557 -47979996 - MIR SINE MIR 0 262 65 2974 215 17 8 chr11 102804756 102805477 -47978076 + L1MB7 LINE L1 3756 4482 -1664 11468 174 26 11 chr11 102805489 102808083 -47975470 + L1M1 LINE L1 3484 6117 -1448 3736 174 61 32 chr11 102808095 102809397 -47974156 + L1MB7 LINE L1 4490 5831 -353 1038 112 17 6 chr11 102809398 102809576 -47973977 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 570 194 97 0 chr11 102809576 102809710 -47973843 + L1MB7 LINE L1 5974 6120 -64 858 198 43 0 chr11 102809713 102809875 -47973678 - FRAM SINE Alu -8 168 1 311 245 174 10 chr11 102809949 102810047 -47973506 + MIR SINE MIR 19 132 -76 1262 164 26 0 chr11 102810299 102810531 -47973022 + L1MB4 LINE L1 5940 6177 -3 1913 121 0 0 chr11 102810558 102810814 -47972739 + AluSx SINE Alu 1 256 -56 47 67 0 0 chr11 102810815 102810904 -47972649 + AT_rich Low_complexity Low_complexity 1 89 0 466 265 51 8 chr11 102811628 102811745 -47971808 - L2 LINE L2 0 3272 3151 574 333 24 5 chr11 102811821 102812028 -47971525 + MIR SINE MIR 2 212 -50 1875 160 48 3 chr11 102812040 102812333 -47971220 + AluJb SINE Alu 1 306 -6 1870 175 36 48 chr11 102812768 102813186 -47970367 - MLT2D LTR ERVL -1 413 1 958 176 16 5 chr11 102813465 102813652 -47969901 + MER5A DNA MER1_type 1 189 0 222 37 0 0 chr11 102813705 102813732 -47969821 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 498 161 25 0 chr11 102813734 102813815 -47969738 - AluSx SINE Alu -34 276 194 1111 70 0 14 chr11 102813821 102813963 -47969590 - AluSx SINE Alu -171 141 2 492 232 9 27 chr11 102814273 102814385 -47969168 - MIR SINE MIR -64 198 89 685 267 233 14 chr11 102814975 102815413 -47968140 - L3 LINE CR1 -5 1572 1039 1049 178 11 5 chr11 102815580 102815765 -47967788 - AluJo SINE Alu 0 312 127 205 225 84 28 chr11 102816154 102816225 -47967328 - MIR SINE MIR -141 121 47 310 265 75 48 chr11 102816920 102817067 -47966486 - MIR SINE MIR -47 215 65 221 268 42 60 chr11 102817836 102818004 -47965549 - L2 LINE L2 -914 2400 2236 993 119 35 0 chr11 102818005 102818148 -47965405 + AluSg/x SINE Alu 135 282 -30 250 153 41 10 chr11 102818153 102818251 -47965302 + (TA)n Simple_repeat Simple_repeat 2 102 0 325 128 64 18 chr11 102818273 102818382 -47965171 + (TA)n Simple_repeat Simple_repeat 2 115 0 590 261 71 102 chr11 102818382 102818991 -47964562 + L2 LINE L2 2698 3309 -4 339 262 123 60 chr11 102819023 102819340 -47964213 + L1MC4 LINE L1 7691 8027 -15 2134 112 29 39 chr11 102819342 102819727 -47963826 - L1MB2 LINE L1 0 6171 5791 228 234 0 0 chr11 102819753 102819800 -47963753 + (TG)n Simple_repeat Simple_repeat 2 48 0 1038 168 5 25 chr11 102819810 102820013 -47963540 - L1MB2 LINE L1 -377 5794 5596 14758 82 2 8 chr11 102820013 102822839 -47960714 - L1PA7 LINE L1 0 6154 3341 6217 98 16 1 chr11 102822839 102823820 -47959733 + L1PA7 LINE L1 2349 3344 -2802 2134 122 7 0 chr11 102823996 102824291 -47959262 - AluSq SINE Alu -16 297 1 2002 143 3 16 chr11 102824869 102825177 -47958376 + AluSx SINE Alu 1 304 -8 293 241 157 0 chr11 102825274 102825357 -47958196 + L2 LINE L2 3218 3313 0 3002 148 15 9 chr11 102826694 102827235 -47956318 - L1MA7 LINE L1 0 6291 5748 277 302 66 0 chr11 102827236 102827342 -47956211 + MIR SINE MIR 92 204 -58 1327 251 40 84 chr11 102827677 102828293 -47955260 + L1ME3A LINE L1 4391 5033 -1137 2125 134 10 0 chr11 102828293 102828592 -47954961 + AluSx SINE Alu 1 302 -10 1327 251 40 84 chr11 102828592 102828704 -47954849 + L1ME3A LINE L1 5033 5148 -1022 1985 118 31 7 chr11 102828704 102828993 -47954560 + AluSg1 SINE Alu 1 296 -13 1327 251 40 84 chr11 102828993 102829346 -47954207 + L1ME3A LINE L1 5148 5515 -655 2133 121 0 20 chr11 102829346 102829643 -47953910 + AluSx SINE Alu 1 291 -21 1327 251 40 84 chr11 102829643 102830024 -47953529 + L1ME3A LINE L1 5515 5781 -389 683 202 46 73 chr11 102830024 102830242 -47953311 - MER58C DNA MER1_type -3 212 1 1327 251 40 84 chr11 102830242 102830354 -47953199 + L1ME3A LINE L1 5781 5896 -274 303 363 82 16 chr11 102830515 102830697 -47952856 + L1ME3A LINE L1 5962 6155 -15 3634 174 47 35 chr11 102830762 102831531 -47952022 - LTR19C LTR ERV1 -1 778 1 2076 107 0 34 chr11 102832009 102832307 -47951246 + AluSx SINE Alu 1 288 -24 859 108 0 17 chr11 102832327 102832447 -47951106 + FLAM_C SINE Alu 1 118 -15 290 321 37 0 chr11 102832460 102832569 -47950984 - MIR SINE MIR -103 159 47 253 191 0 0 chr11 102832573 102832620 -47950933 - MLT2C1 LTR ERVL -4 393 347 244 302 63 32 chr11 102833097 102833223 -47950330 + MIR SINE MIR 105 234 -28 260 265 83 72 chr11 102833309 102833490 -47950063 + MIR3 SINE MIR 2 184 -24 2432 77 10 13 chr11 102833684 102833995 -47949558 + AluY SINE Alu 1 310 -1 195 100 0 0 chr11 102834066 102834096 -47949457 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 1867 178 3 0 chr11 102834291 102834595 -47948958 - AluJb SINE Alu -7 305 1 235 348 6 24 chr11 102835060 102835224 -47948329 + CT-rich Low_complexity Low_complexity 2 162 0 409 249 46 6 chr11 102835294 102835467 -47948086 - L1ME4a LINE L1 -238 5883 5704 905 198 14 112 chr11 102835516 102835666 -47947887 + MIR SINE MIR 12 175 -87 2259 125 12 35 chr11 102835666 102835897 -47947656 - L1MA5 LINE L1 -6 6294 6059 2280 82 4 0 chr11 102835897 102836178 -47947375 + AluSg SINE Alu 1 282 -28 195 42 0 0 chr11 102836181 102836205 -47947348 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 2259 125 12 35 chr11 102836205 102836393 -47947160 - L1MA5 LINE L1 -243 6057 5881 905 198 14 112 chr11 102836393 102836520 -47947033 + MIR SINE MIR 175 262 0 381 282 122 0 chr11 102836684 102836840 -47946713 - MER117 DNA MER1_type -2 195 21 190 89 22 111 chr11 102836866 102836898 -47946655 + MER5B DNA MER1_type 1 30 -148 2487 88 12 86 chr11 102836898 102837305 -47946248 + MER51B LTR ERV1 1 377 0 190 89 22 111 chr11 102837305 102837317 -47946236 + MER5B DNA MER1_type 30 41 -137 1339 253 118 66 chr11 102837353 102837400 -47946153 + MLT1E LTR MaLR 33 76 -517 781 181 0 8 chr11 102837400 102837533 -47946020 - FLAM_C SINE Alu -1 132 1 1339 253 118 66 chr11 102837533 102838018 -47945535 + MLT1E LTR MaLR 76 593 0 277 262 151 40 chr11 102838027 102838153 -47945400 - MER5B DNA MER1_type -38 140 1 341 271 8 3 chr11 102838160 102838290 -47945263 - MER5A DNA MER1_type -6 183 15 732 251 12 12 chr11 102838604 102838771 -47944782 - MER45A DNA AcHobo -11 167 1 4803 117 10 10 chr11 102839226 102839917 -47943636 - LTR8 LTR ERV1 0 691 1 227 280 27 0 chr11 102840358 102840433 -47943120 - MIR SINE MIR -3 259 183 238 306 24 12 chr11 102840445 102840530 -47943023 + MIR SINE MIR 2 87 -175 1769 185 7 0 chr11 102840583 102840869 -47942684 + AluSx SINE Alu 1 288 -24 2115 142 7 0 chr11 102840875 102841185 -47942368 + AluSx SINE Alu 1 312 0 190 213 0 100 chr11 102841187 102841267 -47942286 + MIR SINE MIR 148 219 -43 404 297 28 7 chr11 102841288 102841433 -47942120 - MIR SINE MIR -68 194 47 236 153 17 51 chr11 102841576 102841635 -47941918 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 1033 224 82 22 chr11 102841686 102841879 -47941674 + L1ME1 LINE L1 5715 5936 -230 1264 196 82 90 chr11 102841879 102842333 -47941220 - LTR7 LTR ERV1 0 450 1 1033 224 82 22 chr11 102842333 102842456 -47941097 + L1ME1 LINE L1 5936 6050 -116 636 106 43 0 chr11 102842456 102842550 -47941003 + MER4A LTR ERV1 1 98 -566 1501 129 38 111 chr11 102842550 102842923 -47940630 + MER4A LTR ERV1 261 664 0 12047 109 171 119 chr11 102842928 102843956 -47939597 + MER4A-int LTR ERV1 3 976 -5622 441 0 0 0 chr11 102843956 102844005 -47939548 + (TG)n Simple_repeat Simple_repeat 2 50 0 12047 109 171 119 chr11 102844005 102844356 -47939197 + MER4A-int LTR ERV1 976 1307 -5291 1975 146 17 0 chr11 102844356 102844657 -47938896 - AluSx SINE Alu -6 306 1 12047 109 171 119 chr11 102844657 102846475 -47937078 + MER4A-int LTR ERV1 1307 3367 -3231 15617 105 63 16 chr11 102846492 102846604 -47936949 + MER4A-int LTR ERV1 3960 4065 -2533 2559 65 7 0 chr11 102846604 102846911 -47936642 + AluY SINE Alu 1 309 -2 15617 105 63 16 chr11 102846911 102849316 -47934237 + MER4A-int LTR ERV1 4065 6597 -1 640 113 21 10 chr11 102849321 102849418 -47934135 + MER4A LTR ERV1 1 98 -566 1764 149 20 30 chr11 102849418 102849767 -47933786 + MER4A LTR ERV1 261 664 0 495 254 45 23 chr11 102849852 102850029 -47933524 + MIR SINE MIR 29 209 -53 184 307 80 13 chr11 102850049 102850124 -47933429 + L2 LINE L2 3189 3268 -4 516 226 75 8 chr11 102850806 102850939 -47932614 - MER97c DNA MER1_type? -911 179 38 313 244 0 22 chr11 102851122 102851212 -47932341 - L1MA10 LINE L1 -3 6331 6244 1408 153 20 20 chr11 102851212 102851467 -47932086 - LTR24C LTR ERV1 0 635 381 2418 147 33 10 chr11 102851467 102851856 -47931697 + MER48 LTR ERV1 1 398 0 39519 113 17 5 chr11 102851856 102857611 -47925942 + HERVH48 LTR ERV1 1 5823 -831 5476 126 35 7 chr11 102858664 102859566 -47923987 + HERVH48 LTR ERV1 5794 6654 0 2400 126 55 13 chr11 102859567 102859948 -47923605 + MER48 LTR ERV1 2 398 0 620 152 0 36 chr11 102860024 102860136 -47923417 - L1PA16 LINE L1 -4 6162 6055 2082 122 13 6 chr11 102860143 102860455 -47923098 - LTR24C LTR ERV1 -321 314 1 1630 153 9 26 chr11 102860497 102860831 -47922722 - MER4A LTR ERV1 -17 647 261 550 165 21 10 chr11 102860831 102860928 -47922625 - MER4A LTR ERV1 -566 98 1 6656 122 81 10 chr11 102860960 102862150 -47921403 - MER4-int LTR ERV1 -4211 2387 553 694 162 0 17 chr11 102862150 102862267 -47921286 + MER4A LTR ERV1 550 664 0 2774 104 89 18 chr11 102862270 102862779 -47920774 + MER4A-int LTR ERV1 1 589 -6009 360 96 19 0 chr11 102862782 102862834 -47920719 - MER4A LTR ERV1 -351 313 261 595 134 21 10 chr11 102862834 102862931 -47920622 - MER4A LTR ERV1 -566 98 1 237 246 49 0 chr11 102863801 102863862 -47919691 + L2 LINE L2 3249 3312 -1 592 281 47 6 chr11 102864000 102864171 -47919382 - MER5B DNA MER1_type 0 178 1 272 269 75 0 chr11 102864364 102864431 -47919122 - L2 LINE L2 -4 3309 3238 627 146 10 0 chr11 102864432 102864528 -47919025 + MER4A LTR ERV1 2 98 -566 1823 133 160 76 chr11 102864528 102864897 -47918656 + MER4A LTR ERV1 263 662 -2 2731 104 91 13 chr11 102864902 102865540 -47918013 + MER4A-int LTR ERV1 1 807 -5791 261 0 0 0 chr11 102865553 102865582 -47917971 + (CA)n Simple_repeat Simple_repeat 2 30 0 660 189 43 12 chr11 102865691 102865855 -47917698 + MER4A-int LTR ERV1 3513 3681 -2917 * 10768 97 52 34 chr11 102865853 102866163 -47917390 + MER4A-int LTR ERV1 3836 4139 -2459 1950 119 40 0 chr11 102866163 102866440 -47917113 + AluSq SINE Alu 6 293 -20 10768 97 52 34 chr11 102866440 102867932 -47915621 + MER4A-int LTR ERV1 4139 5671 -927 1562 143 12 4 chr11 102867928 102868179 -47915374 + MER4A-int LTR ERV1 6344 6596 -2 * 609 137 20 10 chr11 102868188 102868290 -47915263 + MER4A LTR ERV1 2 104 -560 * 1699 136 171 76 chr11 102868286 102868655 -47914898 + MER4A LTR ERV1 261 664 0 234 354 71 0 chr11 102868742 102868869 -47914684 + L2 LINE L2 3137 3272 0 317 329 24 29 chr11 102869039 102869209 -47914344 - MLT1K LTR MaLR -123 465 297 1947 143 0 10 chr11 102869461 102869754 -47913799 - AluJo SINE Alu -22 290 1 486 306 38 29 chr11 102869757 102870047 -47913506 - MLT1L LTR MaLR -158 457 101 2128 53 0 19 chr11 102870204 102870469 -47913084 - AluY SINE Alu -8 303 44 213 189 0 0 chr11 102870528 102870565 -47912988 + L2 LINE L2 3195 3231 -41 348 94 0 0 chr11 102870644 102870697 -47912856 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 21 0 0 0 chr11 102871009 102871030 -47912523 + GC_rich Low_complexity Low_complexity 1 21 0 22 88 0 0 chr11 102871510 102871567 -47911986 + GC_rich Low_complexity Low_complexity 1 57 0 406 260 89 7 chr11 102872088 102872234 -47911319 - MIR SINE MIR 0 262 105 1583 171 13 44 chr11 102872236 102872551 -47911002 + AluJb SINE Alu 1 305 -7 210 288 17 42 chr11 102873273 102873391 -47910162 + L2 LINE L2 3157 3271 -1 1691 168 60 31 chr11 102873576 102873928 -47909625 + MLT1A2 LTR MaLR 13 374 0 2566 65 0 7 chr11 102874628 102874936 -47908617 + AluSc SINE Alu 1 306 -3 781 129 0 61 chr11 102875538 102875670 -47907883 + FLAM_A SINE Alu 1 124 -9 261 211 19 0 chr11 102875702 102875754 -47907799 - L1MEd LINE L1 -5470 649 597 226 302 135 0 chr11 102875758 102875884 -47907669 - L2 LINE L2 -192 3080 2938 426 227 50 42 chr11 102876462 102876581 -47906972 + MER5B DNA MER1_type 59 178 0 336 306 127 19 chr11 102878046 102878203 -47905350 - MIR SINE MIR 0 262 89 270 0 0 0 chr11 102878204 102878234 -47905319 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 541 276 11 93 chr11 102878255 102878523 -47905030 - L2 LINE L2 -39 3233 2988 2136 104 38 0 chr11 102878586 102878873 -47904680 - AluSx SINE Alu -14 298 1 268 321 37 9 chr11 102879458 102879567 -47903986 - L3 LINE CR1 -106 1471 1360 * 598 301 16 33 chr11 102879542 102879810 -47903743 - MIR SINE MIR 0 262 3 332 202 53 11 chr11 102880099 102880193 -47903360 + MER5A DNA MER1_type 92 189 0 3661 139 56 15 chr11 102880233 102880845 -47902708 - MER51C LTR ERV1 0 640 4 474 194 70 16 chr11 102880873 102881002 -47902551 + MER5A DNA MER1_type 54 189 0 503 200 125 25 chr11 102881288 102881448 -47902105 - MER5B DNA MER1_type 0 178 3 2130 155 62 17 chr11 102881531 102881937 -47901616 - MLT1C LTR MaLR -43 424 1 183 333 74 0 chr11 102882159 102882240 -47901313 - MIR SINE MIR -87 175 89 1822 151 3 22 chr11 102882866 102883183 -47900370 - AluJb SINE Alu -1 311 1 2054 125 3 13 chr11 102883190 102883503 -47900050 - AluSx SINE Alu -2 310 1 219 310 30 20 chr11 102883540 102883640 -47899913 - MIR SINE MIR -88 120 20 352 285 27 38 chr11 102883985 102884175 -47899378 - MIR SINE MIR -39 223 38 2214 115 0 0 chr11 102884361 102884647 -47898906 + AluSx SINE Alu 1 286 -26 270 0 0 0 chr11 102884651 102884681 -47898872 + (TG)n Simple_repeat Simple_repeat 1 30 0 709 352 66 32 chr11 102884863 102885744 -47897809 - L2 LINE L2 -35 3237 2322 530 317 63 37 chr11 102885937 102886179 -47897374 - L2 LINE L2 -955 2359 2125 1904 164 47 85 chr11 102886179 102886241 -47897312 - MSTC LTR MaLR 0 428 365 1572 194 7 16 chr11 102886241 102886550 -47897003 - AluJo SINE Alu -6 306 1 1904 164 47 85 chr11 102886550 102886877 -47896676 - MSTC LTR MaLR -63 365 56 1997 146 0 28 chr11 102886877 102887198 -47896355 - AluSx SINE Alu 0 312 1 1904 164 47 85 chr11 102887198 102887252 -47896301 - MSTC LTR MaLR -372 56 1 530 317 63 37 chr11 102887252 102887359 -47896194 - L2 LINE L2 -1189 2125 2001 355 316 91 62 chr11 102887371 102887867 -47895686 - L2 LINE L2 -1975 1339 830 1790 146 51 4 chr11 102888117 102888392 -47895161 - AluJb SINE Alu -20 292 5 1587 155 7 36 chr11 102888394 102888697 -47894856 - MER33 DNA MER1_type -30 294 1 366 222 103 34 chr11 102888836 102888953 -47894600 + MIR SINE MIR 28 142 -66 1006 296 42 29 chr11 102889375 102889827 -47893726 - L1MC4a LINE L1 -1897 5911 5454 1284 172 124 8 chr11 102890383 102890633 -47892920 + AluSg SINE Alu 20 298 -12 1580 157 27 30 chr11 102890636 102890936 -47892617 + AluJb SINE Alu 3 301 -11 327 311 74 30 chr11 102891126 102891261 -47892292 - L2 LINE L2 0 3272 3132 301 220 90 6 chr11 102891778 102891856 -47891697 + MIR SINE MIR 32 112 -96 2219 98 0 7 chr11 102892144 102892441 -47891112 - AluSx SINE Alu -9 303 9 593 192 10 0 chr11 102892443 102892547 -47891006 - MER81 DNA DNA -4 110 6 343 347 54 46 chr11 102893698 102893937 -47889616 - L1ME4a LINE L1 -75 6046 5806 853 99 0 0 chr11 102893961 102894072 -47889481 - HY1 scRNA scRNA -1 111 1 2212 92 7 0 chr11 102894310 102894592 -47888961 - AluSp SINE Alu -29 284 1 1313 234 62 23 chr11 102894712 102894995 -47888558 + L1MA9 LINE L1 2746 3049 -3097 2417 74 0 7 chr11 102894995 102895292 -47888261 + AluY SINE Alu 1 295 -16 1313 234 62 23 chr11 102895292 102895396 -47888157 + L1MA9 LINE L1 3049 3148 -2998 263 134 17 168 chr11 102895395 102895429 -47888124 - L1 LINE L1 -2903 3243 3206 * 1841 158 3 23 chr11 102895429 102895739 -47887814 - AluJo SINE Alu -8 304 1 263 134 17 168 chr11 102895739 102895823 -47887730 - L1 LINE L1 -2940 3206 3143 645 179 18 0 chr11 102895825 102895937 -47887616 + AluJb SINE Alu 199 312 0 4969 161 33 34 chr11 102895938 102896224 -47887329 + L1MA9 LINE L1 4357 4642 -1670 1871 160 0 7 chr11 102896224 102896517 -47887036 + AluJb SINE Alu 1 291 -21 4969 161 33 34 chr11 102896517 102897486 -47886067 + L1MA9 LINE L1 4642 5726 -586 2263 106 0 0 chr11 102897486 102897779 -47885774 + AluSx SINE Alu 1 293 -19 4969 161 33 34 chr11 102897779 102898358 -47885195 + L1MA9 LINE L1 5726 6305 -7 579 178 153 25 chr11 102898376 102898494 -47885059 + FLAM_C SINE Alu 1 133 0 1640 154 22 32 chr11 102898905 102899216 -47884337 + AluSx SINE Alu 1 308 -4 2238 99 0 7 chr11 102899312 102899614 -47883939 + AluSg SINE Alu 1 300 -10 426 277 40 0 chr11 102899793 102899894 -47883659 - L2 LINE L2 0 3272 3168 380 202 19 67 chr11 102900196 102900300 -47883253 + L2 LINE L2 3214 3312 -1 2146 115 17 0 chr11 102904929 102905224 -47878329 - AluSq SINE Alu -13 300 1 4151 157 80 16 chr11 102905545 102905707 -47877846 - LTR39 LTR ERV1 -2 781 631 1614 197 13 23 chr11 102905707 102906016 -47877537 + AluJb SINE Alu 3 308 -4 4151 157 80 16 chr11 102906016 102906587 -47876966 - LTR39 LTR ERV1 -152 631 1 283 154 0 0 chr11 102906771 102906810 -47876743 + Alu SINE Alu 1 39 -260 322 251 103 0 chr11 102907135 102907243 -47876310 - MIR SINE MIR -62 146 28 591 221 149 18 chr11 102907583 102907679 -47875874 + MER5C DNA MER1_type 6 88 -236 1858 144 11 0 chr11 102907679 102907957 -47875596 + AluSx SINE Alu 1 281 -31 591 221 149 18 chr11 102907957 102908141 -47875412 + MER5C DNA MER1_type 88 323 -1 2041 138 10 0 chr11 102908958 102909248 -47874305 + AluJb SINE Alu 1 293 -19 899 97 0 0 chr11 102910186 102910300 -47873253 - FLAM_C SINE Alu -24 119 6 1347 118 28 24 chr11 102910642 102910853 -47872700 + Tigger3(Golem) DNA MER2_type 2818 3029 0 2129 98 0 83 chr11 102911003 102911340 -47872213 + AluSx SINE Alu 1 309 -3 40 21 0 0 chr11 102911348 102911395 -47872158 + AT_rich Low_complexity Low_complexity 1 47 0 830 268 145 58 chr11 102912279 102912742 -47870811 + LTR33 LTR ERVL 19 521 0 309 265 0 41 chr11 102912860 102912958 -47870595 + LTR67 LTR ERVL 430 523 -34 274 258 0 0 chr11 102913230 102913296 -47870257 - MIR SINE MIR -93 115 50 198 0 0 0 chr11 102913301 102913323 -47870230 + (T)n Simple_repeat Simple_repeat 1 22 0 206 241 0 0 chr11 102913701 102913755 -47869798 + A-rich Low_complexity Low_complexity 4 57 0 317 232 177 77 chr11 102913838 102914058 -47869495 - MLT1K LTR MaLR -205 383 142 292 298 62 25 chr11 102914026 102914187 -47869366 - MLT1K LTR MaLR -346 242 76 * 275 297 171 0 chr11 102914407 102914518 -47869035 + L2 LINE L2 3182 3311 -2 1025 167 19 0 chr11 102915334 102915496 -47868057 - AluJb SINE Alu -13 299 135 1525 171 50 14 chr11 102915496 102915776 -47867777 - AluJb SINE Alu -22 290 1 201 226 68 83 chr11 102916030 102916163 -47867390 + MIR SINE MIR 75 205 -57 209 327 9 18 chr11 102916598 102916654 -47866899 + CT-rich Low_complexity Low_complexity 2 58 -52 2112 127 3 13 chr11 102916654 102916968 -47866585 - AluSx SINE Alu -1 311 1 209 327 9 18 chr11 102916968 102917021 -47866532 + CT-rich Low_complexity Low_complexity 58 110 0 3417 78 20 0 chr11 102917775 102918223 -47865330 - L1PA13 LINE L1 -4 6159 5703 1495 213 108 31 chr11 102918428 102918896 -47864657 - L1MB7 LINE L1 -19 6976 6474 1769 181 0 7 chr11 102918938 102919231 -47864322 - AluJo SINE Alu -21 291 1 2206 122 3 3 chr11 102919408 102919719 -47863834 + AluSx SINE Alu 1 311 -1 1887 104 0 92 chr11 102919748 102920083 -47863470 + L1M1 LINE L1 5355 5658 -645 193 255 0 39 chr11 102920090 102920141 -47863412 - L2 LINE L2 -20 3293 3245 3011 221 43 36 chr11 102920200 102921106 -47862447 - L1MB7 LINE L1 -1286 5671 4760 * 10154 188 73 11 chr11 102921092 102924665 -47858888 - L1MA3 LINE L1 0 6305 2506 2762 253 64 37 chr11 102926601 102927229 -47856324 - L1MB7 LINE L1 -3648 3309 2699 459 0 0 0 chr11 102927229 102927280 -47856273 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2762 253 64 37 chr11 102927280 102928589 -47854964 - L1MB7 LINE L1 -4258 2699 1193 27 0 0 0 chr11 102928589 102928616 -47854937 + AT_rich Low_complexity Low_complexity 1 27 0 343 243 68 10 chr11 102928644 102928747 -47854806 - L1MB7 LINE L1 -5657 1198 1090 274 282 86 40 chr11 102928753 102928927 -47854626 - L1MB7 LINE L1 -6653 206 25 40 21 0 0 chr11 102929257 102929304 -47854249 + AT_rich Low_complexity Low_complexity 1 47 0 740 206 0 22 chr11 102929304 102929440 -47854113 - FLAM_C SINE Alu 0 133 1 246 303 157 19 chr11 102929628 102929889 -47853664 - L1MC4a LINE L1 -1785 6023 5727 486 0 0 0 chr11 102930664 102930718 -47852835 + (TA)n Simple_repeat Simple_repeat 1 54 0 239 381 10 21 chr11 102930718 102930815 -47852738 - L2 LINE L2 -43 3229 3134 255 146 0 21 chr11 102930852 102930900 -47852653 + L1MC4 LINE L1 6657 6703 -1339 211 263 0 18 chr11 102930901 102930958 -47852595 + (TA)n Simple_repeat Simple_repeat 1 56 0 761 291 20 8 chr11 102930997 102931241 -47852312 - MIR SINE MIR -14 248 2 1198 360 90 10 chr11 102931304 102932102 -47851451 - L2 LINE L2 -494 2820 1959 23 0 0 0 chr11 102932390 102932413 -47851140 + AT_rich Low_complexity Low_complexity 1 23 0 248 330 71 0 chr11 102932821 102932933 -47850620 + MIR SINE MIR 137 256 -6 492 324 127 5 chr11 102933801 102934014 -47849539 - MIR SINE MIR -19 243 5 22 0 0 0 chr11 102934048 102934070 -47849483 + AT_rich Low_complexity Low_complexity 1 22 0 184 311 16 0 chr11 102935470 102935531 -47848022 - L2 LINE L2 -5 3267 3206 395 240 108 8 chr11 102935857 102935986 -47847567 - MIR3 SINE MIR -1 207 66 236 200 43 14 chr11 102936163 102936233 -47847320 + GA-rich Low_complexity Low_complexity 4 75 0 1645 168 13 45 chr11 102936471 102936780 -47846773 + AluJo SINE Alu 3 301 -11 2072 112 3 7 chr11 102936851 102937136 -47846417 + AluSx SINE Alu 12 295 -17 21 0 0 0 chr11 102937175 102937196 -47846357 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr11 102937239 102937277 -47846276 + AT_rich Low_complexity Low_complexity 1 38 0 291 383 47 27 chr11 102937599 102937748 -47845805 - L2 LINE L2 -20 3252 3101 339 324 127 12 chr11 102938659 102938832 -47844721 - L2 LINE L2 -211 3061 2869 313 346 22 3 chr11 102938811 102938997 -47844556 - L3 LINE CR1 -2 1575 1336 * 869 144 0 0 chr11 102939870 102939988 -47843565 - FLAM_C SINE Alu -25 118 1 698 269 82 48 chr11 102940036 102940720 -47842833 - L1ME4a LINE L1 -119 6002 5296 281 324 14 49 chr11 102941334 102941476 -47842077 - L2 LINE L2 0 3313 3177 270 95 0 0 chr11 102941899 102941941 -47841612 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 217 305 78 43 chr11 102942322 102942463 -47841090 - L2 LINE L2 -248 3065 2920 534 307 113 5 chr11 102944047 102944259 -47839294 + MIR SINE MIR 22 256 -6 812 201 52 11 chr11 102944842 102945016 -47838537 + AluJo SINE Alu 122 302 -10 396 312 16 24 chr11 102945178 102945303 -47838250 + MIR SINE MIR 2 125 -137 385 179 393 0 chr11 102946287 102946399 -47837154 + MER5B DNA MER1_type 23 178 0 316 314 17 17 chr11 102946811 102946971 -47836582 - MIR SINE MIR -66 142 20 200 256 0 0 chr11 102947262 102947305 -47836248 - L2 LINE L2 -8 3305 3263 1379 190 95 29 chr11 102947535 102947914 -47835639 - L1MC4 LINE L1 -6 8036 7633 1417 83 29 0 chr11 102947955 102948159 -47835394 - L1MA2 LINE L1 0 6304 6095 800 275 190 23 chr11 102948168 102948716 -47834837 + L2 LINE L2 2669 3310 -3 288 0 0 0 chr11 102949014 102949046 -47834507 + (TA)n Simple_repeat Simple_repeat 2 33 0 1168 246 76 52 chr11 102949054 102949514 -47834039 - MLT2B1 LTR ERVL -48 472 2 700 322 34 4 chr11 102949672 102949908 -47833645 - MIR SINE MIR 0 262 20 6309 100 10 3 chr11 102950489 102952038 -47831515 + L1PA10 LINE L1 4615 6168 0 2247 84 3 0 chr11 102952322 102952609 -47830944 - AluY SINE Alu -23 288 1 3630 201 22 7 chr11 102952617 102953464 -47830089 - L1 LINE L1 -1163 4983 4124 26 50 0 0 chr11 102953553 102953593 -47829960 + AT_rich Low_complexity Low_complexity 1 40 0 554 256 109 21 chr11 102954150 102954388 -47829165 - L2 LINE L2 0 3313 3055 1963 134 54 57 chr11 102954591 102954979 -47828574 + MLT1B LTR MaLR 1 387 -3 23 33 0 0 chr11 102955010 102955040 -47828513 + AT_rich Low_complexity Low_complexity 1 30 0 187 236 28 104 chr11 102955066 102955172 -47828381 + MER5A DNA MER1_type 54 151 -38 991 132 0 0 chr11 102955250 102955386 -47828167 + AluJo SINE Alu 1 136 -176 2161 128 0 0 chr11 102955386 102955674 -47827879 + AluSx SINE Alu 1 288 -24 305 341 54 0 chr11 102955685 102955814 -47827739 - MIR SINE MIR -125 137 2 597 214 0 0 chr11 102956274 102956377 -47827176 - AluSc SINE Alu -32 277 175 910 151 0 0 chr11 102956448 102956587 -47826966 - AluJb SINE Alu -161 151 13 1682 170 0 23 chr11 102956621 102956927 -47826626 - AluJb SINE Alu -13 299 1 25 65 0 0 chr11 102957115 102957161 -47826392 + AT_rich Low_complexity Low_complexity 1 46 0 1980 136 49 0 chr11 102957780 102958066 -47825487 + AluSx SINE Alu 2 301 -11 683 140 123 9 chr11 102958162 102958276 -47825277 - FLAM_C SINE Alu -6 127 1 407 255 263 19 chr11 102960475 102960848 -47822705 + L1ME4a LINE L1 5365 5828 -293 326 350 0 30 chr11 102961992 102962092 -47821461 - L2 LINE L2 -22 3250 3154 555 208 80 0 chr11 102962381 102962506 -47821047 - FRAM SINE Alu -46 130 1 2131 131 0 32 chr11 102962658 102962971 -47820582 + AluSx SINE Alu 1 303 -9 552 224 33 59 chr11 102963018 102963128 -47820425 + MER5B DNA MER1_type 29 135 -43 2263 115 3 0 chr11 102963128 102963432 -47820121 + AluSx SINE Alu 1 305 -7 552 224 33 59 chr11 102963432 102963473 -47820080 + MER5B DNA MER1_type 135 176 -2 201 138 0 0 chr11 102963607 102963636 -47819917 + (CATATA)n Simple_repeat Simple_repeat 1 29 0 758 165 0 0 chr11 102963638 102963753 -47819800 - FLAM_A SINE Alu -18 115 1 969 182 12 0 chr11 102964331 102964501 -47819052 + FAM SINE Alu 1 172 -3 299 344 99 20 chr11 102964716 102964896 -47818657 + MIR SINE MIR 4 195 -65 546 261 124 28 chr11 102965333 102965582 -47817971 + L1MC4 LINE L1 6770 7042 -1000 2144 131 0 0 chr11 102965735 102966032 -47817521 + AluSx SINE Alu 1 297 -15 21 36 0 0 chr11 102966503 102966531 -47817022 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 102966579 102966602 -47816951 + AT_rich Low_complexity Low_complexity 1 23 0 270 218 109 0 chr11 102966910 102967011 -47816542 + L1MC5 LINE L1 7672 7783 -178 291 247 0 12 chr11 102968381 102968466 -47815087 - MER113 DNA MER1_type? -437 84 1 2225 121 0 0 chr11 102970306 102970603 -47812950 - AluSx SINE Alu -12 300 4 2201 128 0 0 chr11 102971195 102971491 -47812062 - AluSx SINE Alu -16 296 1 37 23 0 0 chr11 102972018 102972062 -47811491 + AT_rich Low_complexity Low_complexity 1 44 0 412 205 102 47 chr11 102972174 102972301 -47811252 + L2 LINE L2 3180 3313 0 258 268 73 41 chr11 102972424 102972588 -47810965 - MIR SINE MIR -64 144 32 889 211 62 25 chr11 102972792 102973067 -47810486 + L1ME3 LINE L1 5850 6134 -28 25 31 0 0 chr11 102973209 102973241 -47810312 + AT_rich Low_complexity Low_complexity 1 32 0 758 202 9 33 chr11 102973256 102973469 -47810084 - L1MC4a LINE L1 -53 7755 7548 378 299 69 5 chr11 102973477 102973681 -47809872 - LTR16B LTR ERVL -13 451 235 239 200 67 0 chr11 102973709 102973769 -47809784 - LTR16B LTR ERVL -308 156 93 2021 199 114 9 chr11 102973818 102974372 -47809181 - L1MC4a LINE L1 -250 7558 6947 450 333 27 11 chr11 102974438 102974621 -47808932 + MIR SINE MIR 10 195 -67 1481 107 0 142 chr11 102975471 102975816 -47807737 + AluYa8 SINE Alu 1 296 -14 338 353 92 12 chr11 102976309 102976558 -47806995 - L2 LINE L2 -733 2581 2313 457 380 68 10 chr11 102976591 102977001 -47806552 - L2 LINE L2 -791 2523 2090 423 254 63 28 chr11 102977029 102977171 -47806382 - MIR3 SINE MIR -59 149 3 718 244 83 67 chr11 102977713 102978073 -47805480 - MLT1H1 LTR MaLR -188 367 2 330 304 140 27 chr11 102978238 102978573 -47804980 + MLT1K LTR MaLR 117 489 -99 429 244 230 47 chr11 102978718 102978745 -47804808 + MIR SINE MIR 1 22 -240 1902 151 0 17 chr11 102978745 102979043 -47804510 + AluJo SINE Alu 1 293 -19 429 244 230 47 chr11 102979043 102979228 -47804325 + MIR SINE MIR 22 252 -10 846 127 8 15 chr11 102979329 102979463 -47804090 - FLAM_C SINE Alu 0 133 1 700 203 123 0 chr11 102980760 102980923 -47802630 + MER5A DNA MER1_type 4 189 0 1937 187 104 12 chr11 102981312 102981551 -47802002 - MLT1C LTR MaLR -5 462 246 426 79 0 0 chr11 102981551 102981614 -47801939 + (TG)n Simple_repeat Simple_repeat 2 64 0 1937 187 104 12 chr11 102981614 102981797 -47801756 - MLT1C LTR MaLR -221 246 1 259 313 72 12 chr11 102982185 102982268 -47801285 - MIR SINE MIR -155 107 20 1492 129 91 83 chr11 102982320 102982692 -47800861 - THE1C LTR MaLR 0 375 1 286 323 4 8 chr11 102983661 102983809 -47799744 - MIR3 SINE MIR -63 145 12 1657 173 32 11 chr11 102983894 102984172 -47799381 + AluJb SINE Alu 1 284 -28 2280 116 7 0 chr11 102984299 102984642 -47798911 - AluSx SINE Alu 0 345 1 450 197 47 55 chr11 102984762 102984889 -47798664 - MIR SINE MIR -46 216 91 185 296 10 71 chr11 102985535 102985633 -47797920 + MIR SINE MIR 36 127 -81 225 250 14 56 chr11 102985688 102985760 -47797793 - MER5A DNA MER1_type 0 189 121 350 227 213 47 chr11 102985770 102985826 -47797727 - MER5A DNA MER1_type -14 175 130 2155 134 0 10 chr11 102985826 102986133 -47797420 + AluSx SINE Alu 9 312 0 350 227 213 47 chr11 102986133 102986226 -47797327 - MER5A DNA MER1_type -59 130 1 295 273 137 35 chr11 102986965 102987139 -47796414 - MIR SINE MIR -32 230 39 348 231 120 60 chr11 102987197 102987314 -47796239 + MER5B DNA MER1_type 7 130 -48 289 41 82 0 chr11 102987316 102987365 -47796188 + T-rich Low_complexity Low_complexity 3 55 0 180 207 0 0 chr11 102987671 102987700 -47795853 - MIR SINE MIR -185 77 49 395 283 10 10 chr11 102987760 102987859 -47795694 - MER5B DNA MER1_type -79 99 1 234 0 0 0 chr11 102988639 102988665 -47794888 + (GA)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr11 102988912 102988936 -47794617 + AT_rich Low_complexity Low_complexity 1 24 0 298 344 64 0 chr11 102989120 102989245 -47794308 - L2 LINE L2 0 3272 3140 1838 140 34 45 chr11 102989635 102989991 -47793562 - THE1B LTR MaLR -12 352 1 645 110 0 0 chr11 102991554 102991654 -47791899 + (TG)n Simple_repeat Simple_repeat 1 100 0 2218 117 7 0 chr11 102991935 102992234 -47791319 + AluSx SINE Alu 1 301 -11 1793 201 0 48 chr11 102992238 102992631 -47790922 + MLT1A2 LTR MaLR 1 374 0 1880 78 16 0 chr11 102992674 102992931 -47790622 + LTR8 LTR ERV1 1 261 -430 1648 106 22 0 chr11 102992931 102993158 -47790395 + AluSg/x SINE Alu 81 312 0 384 22 0 0 chr11 102993256 102993301 -47790252 + (TG)n Simple_repeat Simple_repeat 2 46 0 201 211 10 106 chr11 102993505 102993609 -47789944 + CT-rich Low_complexity Low_complexity 3 96 0 237 341 74 7 chr11 102993774 102993913 -47789640 + MIR SINE MIR 3 157 -51 202 278 56 67 chr11 102994169 102994259 -47789294 + L3 LINE CR1 1462 1550 -27 271 263 0 0 chr11 102995806 102995863 -47787690 + MIR SINE MIR 119 175 -87 393 176 0 0 chr11 102995874 102995948 -47787605 + (TA)n Simple_repeat Simple_repeat 2 75 0 995 116 23 97 chr11 102997112 102997268 -47786285 - MER3 DNA MER1_type 0 209 72 4314 174 57 18 chr11 102997268 102998098 -47785455 - MER21B LTR ERV1 -1 862 1 995 116 23 97 chr11 102998098 102998157 -47785396 - MER3 DNA MER1_type -137 72 10 2241 116 20 32 chr11 102998185 102998789 -47784764 - MER4A LTR ERV1 0 651 1 8284 106 30 65 chr11 102998883 102999567 -47783986 + Tigger1 DNA MER2_type 965 1671 -747 1851 178 0 3 chr11 102999567 102999860 -47783693 + AluJb SINE Alu 1 292 -20 8284 106 30 65 chr11 102999860 103000682 -47782871 + Tigger1 DNA MER2_type 1671 2418 0 288 0 0 0 chr11 103000838 103000870 -47782683 + (CA)n Simple_repeat Simple_repeat 2 33 0 1126 145 117 57 chr11 103001009 103001023 -47782530 - AluJb SINE Alu -3 309 297 722 187 107 0 chr11 103001023 103001173 -47782380 - FRAM SINE Alu 0 166 1 1126 145 117 57 chr11 103001173 103001440 -47782113 - AluJb SINE Alu -15 297 11 231 36 0 0 chr11 103001488 103001516 -47782037 + (T)n Simple_repeat Simple_repeat 1 28 0 316 155 0 0 chr11 103001568 103001626 -47781927 + Looper DNA T2_type 526 583 -975 805 160 13 45 chr11 103002611 103002767 -47780786 + FRAM SINE Alu 1 150 -26 1828 124 55 4 chr11 103005802 103006077 -47777476 - AluSx SINE Alu -23 289 1 235 143 0 0 chr11 103006110 103006152 -47777401 - MER39B LTR ERV1 -71 582 541 * 244 123 35 35 chr11 103006119 103006176 -47777377 - LTR29 LTR ERV1 -74 548 459 1083 213 85 11 chr11 103006424 103006696 -47776857 + AluJo SINE Alu 1 292 -10 588 206 30 23 chr11 103007648 103007779 -47775774 + AluJo SINE Alu 126 257 -55 21 0 0 0 chr11 103011481 103011502 -47772051 + AT_rich Low_complexity Low_complexity 1 21 0 281 219 20 0 chr11 103012085 103012147 -47771406 - AluJb SINE Alu -26 276 221 587 164 79 36 chr11 103012147 103012287 -47771266 - AluJb SINE Alu -124 188 43 417 304 52 31 chr11 103013319 103013513 -47770040 + L3 LINE CR1 1317 1514 -63 498 208 72 40 chr11 103013660 103013785 -47769768 + FLAM_A SINE Alu 1 129 -13 697 137 0 0 chr11 103014923 103015025 -47768528 - AluJ/FLAM SINE Alu -210 102 1 2214 111 3 16 chr11 103015044 103015359 -47768194 + AluSq SINE Alu 1 311 -2 2104 116 31 3 chr11 103016212 103016505 -47767048 - AluSx SINE Alu -11 301 1 574 221 0 66 chr11 103016510 103016646 -47766907 - MER5B DNA MER1_type 0 178 52 2112 148 0 0 chr11 103016681 103016991 -47766562 - AluSx SINE Alu 0 312 3 28 61 0 0 chr11 103017459 103017508 -47766045 + AT_rich Low_complexity Low_complexity 1 49 0 744 113 17 35 chr11 103017508 103017623 -47765930 - FLAM_C SINE Alu -16 127 15 418 267 280 7 chr11 103017739 103017932 -47765621 - MIR SINE MIR -16 246 3 424 86 4 6 chr11 103018470 103018715 -47764838 + AluSc SINE Alu 1 293 -16 1996 139 27 3 chr11 103018997 103019291 -47764262 - AluJb SINE Alu -11 301 1 324 0 0 0 chr11 103019778 103019814 -47763739 + (CA)n Simple_repeat Simple_repeat 2 37 0 307 339 75 26 chr11 103020464 103020583 -47762970 + L1ME4a LINE L1 5847 5959 -162 1703 175 0 14 chr11 103020583 103020875 -47762678 + AluJb SINE Alu 1 288 -24 307 339 75 26 chr11 103020875 103020982 -47762571 + L1ME4a LINE L1 5959 6084 -37 2414 70 0 3 chr11 103020989 103021288 -47762265 - AluSx SINE Alu -13 299 2 707 200 0 0 chr11 103021288 103021403 -47762150 - FLAM_A SINE Alu -18 115 1 23 33 0 0 chr11 103021736 103021766 -47761787 + AT_rich Low_complexity Low_complexity 1 30 0 803 92 0 0 chr11 103021766 103021875 -47761678 - HY1 scRNA scRNA -1 111 3 1565 192 6 26 chr11 103021917 103022230 -47761323 + AluJo SINE Alu 6 312 0 22 35 0 0 chr11 103022291 103022320 -47761233 + AT_rich Low_complexity Low_complexity 1 29 0 2231 91 10 0 chr11 103022355 103022651 -47760902 - AluSg SINE Alu -11 299 1 233 100 0 25 chr11 103022676 103022716 -47760837 - Alu SINE Alu -13 289 251 1951 167 3 0 chr11 103023269 103023568 -47759985 + AluJo SINE Alu 1 300 -12 2511 197 19 16 chr11 103023598 103024162 -47759391 + MER90 LTR ERV1 1 566 -9 245 203 62 16 chr11 103024232 103024296 -47759257 + L1MA3 LINE L1 17 83 -7482 290 234 24 81 chr11 103024305 103024429 -47759124 + LTR4 LTR ERV1 1 117 -479 688 240 21 49 chr11 103024694 103024981 -47758572 + LTR4 LTR ERV1 318 596 0 21147 144 36 13 chr11 103024985 103026617 -47756936 + L1MA3 LINE L1 96 1688 -6036 180 0 0 0 chr11 103026617 103026637 -47756916 + (GA)n Simple_repeat Simple_repeat 2 21 0 21147 144 36 13 chr11 103026637 103026931 -47756622 + L1MA3 LINE L1 1688 1974 -5750 2307 100 0 0 chr11 103026931 103027230 -47756323 + AluSc SINE Alu 1 299 -10 21147 144 36 13 chr11 103027230 103028585 -47754968 + L1MA3 LINE L1 1974 3296 -4428 342 0 0 0 chr11 103028585 103028623 -47754930 + (CAA)n Simple_repeat Simple_repeat 2 39 0 21147 144 36 13 chr11 103028623 103028926 -47754627 + L1MA3 LINE L1 3296 3590 -4134 2113 125 0 37 chr11 103028926 103029214 -47754339 + AluSx SINE Alu 1 277 -35 183 42 0 0 chr11 103029214 103029238 -47754315 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2113 125 0 37 chr11 103029238 103029270 -47754283 + AluSx SINE Alu 277 309 -3 21147 144 36 13 chr11 103029270 103029671 -47753882 + L1MA3 LINE L1 3590 3980 -3744 1998 149 0 25 chr11 103029671 103029987 -47753566 + AluSx SINE Alu 3 310 -2 21147 144 36 13 chr11 103029987 103033443 -47750110 + L1MA3 LINE L1 3980 7724 0 225 243 54 0 chr11 103033448 103033522 -47750031 + Charlie2 DNA MER1_type 2675 2752 -110 1899 110 48 27 chr11 103033706 103033998 -47749555 - AluY SINE Alu -13 298 1 369 229 102 57 chr11 103034073 103034230 -47749323 + L1ME4a LINE L1 5931 6094 -27 332 227 73 33 chr11 103035020 103035170 -47748383 + L1ME3A LINE L1 5922 6077 -93 606 303 154 60 chr11 103035223 103035755 -47747798 + HAL1 LINE L1 267 848 -1659 356 251 63 28 chr11 103035850 103036055 -47747498 + HAL1 LINE L1 991 1208 -1299 728 196 76 31 chr11 103036055 103036280 -47747273 - MER106A DNA MER1_type 0 236 2 356 251 63 28 chr11 103036280 103036329 -47747224 + HAL1 LINE L1 1208 1254 -1253 312 228 133 50 chr11 103036347 103036527 -47747026 + HAL1 LINE L1 1950 2144 -363 419 246 23 35 chr11 103036562 103036733 -47746820 + HAL1 LINE L1 2336 2504 -3 824 156 267 11 chr11 103036956 103037136 -47746417 - AluJb SINE Alu -85 227 2 22 35 0 0 chr11 103037295 103037324 -47746229 + AT_rich Low_complexity Low_complexity 1 29 0 2445 66 0 3 chr11 103037410 103037713 -47745840 + AluY SINE Alu 1 302 -9 246 288 0 0 chr11 103037827 103037900 -47745653 + A-rich Low_complexity Low_complexity 3 75 0 2180 125 0 0 chr11 103038214 103038510 -47745043 + AluSq SINE Alu 4 299 -14 2101 114 0 24 chr11 103039214 103039537 -47744016 + AluSx SINE Alu 1 316 0 2063 134 0 13 chr11 103039571 103039884 -47743669 + AluSc SINE Alu 1 309 0 1884 156 7 3 chr11 103040087 103040382 -47743171 - AluJb SINE Alu -15 297 2 1298 163 159 30 chr11 103040775 103041039 -47742514 + AluSg SINE Alu 1 298 -2 21 0 0 0 chr11 103045471 103045492 -47738061 + AT_rich Low_complexity Low_complexity 1 21 0 1802 93 0 0 chr11 103045508 103045733 -47737820 - AluSx SINE Alu -87 225 1 218 284 0 15 chr11 103046138 103046205 -47737348 + GA-rich Low_complexity Low_complexity 2 67 0 2667 184 26 4 chr11 103046590 103047094 -47736459 + Tigger7 DNA MER2_type 4 518 -1969 440 192 0 81 chr11 103047097 103047196 -47736357 + Tigger7 DNA MER2_type 2400 2490 -1 791 191 112 0 chr11 103047469 103047657 -47735896 - MER3 DNA MER1_type 0 209 1 2081 128 13 10 chr11 103047680 103047992 -47735561 - AluSq SINE Alu 0 313 1 22 0 0 0 chr11 103048122 103048144 -47735409 + AT_rich Low_complexity Low_complexity 1 22 0 2108 88 0 10 chr11 103048177 103048473 -47735080 - AluY SINE Alu -18 293 1 2060 163 0 0 chr11 103048474 103048780 -47734773 - AluSx SINE Alu -6 306 1 1041 201 20 10 chr11 103048783 103048982 -47734571 + AluJo SINE Alu 73 273 -39 246 338 44 73 chr11 103049082 103049218 -47734335 - L2 LINE L2 0 3272 3141 521 283 151 64 chr11 103050246 103050684 -47732869 - L2 LINE L2 -1 3312 2837 207 0 0 0 chr11 103050718 103050741 -47732812 + (T)n Simple_repeat Simple_repeat 1 23 0 1538 207 7 26 chr11 103050895 103051204 -47732349 - AluJo SINE Alu -9 303 1 2149 107 0 7 chr11 103051866 103052156 -47731397 - AluSq SINE Alu -25 288 1 2276 94 30 0 chr11 103053015 103053314 -47730239 + AluSc SINE Alu 1 308 -1 198 0 0 0 chr11 103053488 103053510 -47730043 + (A)n Simple_repeat Simple_repeat 1 22 0 828 200 6 12 chr11 103053510 103053670 -47729883 - FAM SINE Alu -16 159 1 313 254 169 68 chr11 103053785 103053899 -47729654 + L1MB7 LINE L1 5500 5601 -2207 1800 156 55 0 chr11 103053899 103054174 -47729379 - AluSx SINE Alu -22 290 1 313 254 169 68 chr11 103054174 103054366 -47729187 + L1MB7 LINE L1 5601 5837 -1971 677 171 44 13 chr11 103054665 103054823 -47728730 + L1MB7 LINE L1 6008 6170 -14 2896 65 21 0 chr11 103055043 103055427 -47728126 + MLT2A1 LTR ERVL 1 392 -52 243 88 0 0 chr11 103055448 103055482 -47728071 + (TA)n Simple_repeat Simple_repeat 1 34 0 261 118 78 0 chr11 103055498 103055549 -47728004 + MLT2A1 LTR ERVL 390 444 0 449 221 61 44 chr11 103055549 103055730 -47727823 - HAL1b LINE L1 -464 884 701 332 254 44 18 chr11 103055836 103055950 -47727603 - L1MC5 LINE L1 -59 7902 7786 635 200 0 25 chr11 103056327 103056447 -47727106 + FLAM_A SINE Alu 4 120 -13 1519 172 41 31 chr11 103057067 103057357 -47726196 + AluJo SINE Alu 1 293 -19 610 246 78 69 chr11 103058149 103058381 -47725172 - MIR SINE MIR 0 262 29 1320 204 7 25 chr11 103058541 103058820 -47724733 + AluJo SINE Alu 12 285 -27 2311 108 0 0 chr11 103058820 103059115 -47724438 - AluSx SINE Alu -12 300 6 42 0 0 0 chr11 103059127 103059169 -47724384 + AT_rich Low_complexity Low_complexity 1 42 0 1606 170 38 14 chr11 103059675 103059964 -47723589 - AluJb SINE Alu -16 296 1 2028 121 20 7 chr11 103059991 103060288 -47723265 + AluSx SINE Alu 1 301 -11 855 154 0 0 chr11 103060288 103060411 -47723142 - AluJo/FLAM SINE Alu -187 125 3 581 301 71 5 chr11 103061179 103061375 -47722178 + MIR SINE MIR 2 210 -52 440 218 30 0 chr11 103062153 103062254 -47721299 - U13 snRNA snRNA 0 104 1 205 339 78 9 chr11 103062369 103062484 -47721069 - MER5A DNA MER1_type -1 188 66 253 288 112 32 chr11 103062711 103062836 -47720717 + L2 LINE L2 3136 3270 -2 2100 107 3 23 chr11 103063216 103063516 -47720037 + AluSc SINE Alu 1 294 -15 820 94 0 0 chr11 103063923 103064029 -47719524 - AluSq/x SINE Alu -188 124 19 485 151 0 0 chr11 103064690 103064763 -47718790 - U4 snRNA snRNA -1 144 72 417 138 0 0 chr11 103064827 103064892 -47718661 - U4 snRNA snRNA -80 65 1 2338 90 3 3 chr11 103064966 103065267 -47718286 + AluSp SINE Alu 6 306 -7 2125 99 13 10 chr11 103066049 103066352 -47717201 + AluSp SINE Alu 1 304 -9 1803 176 13 10 chr11 103066501 103066807 -47716746 - AluJo SINE Alu -5 307 1 1896 128 48 17 chr11 103067755 103068044 -47715509 - AluJb SINE Alu -14 298 1 1868 148 14 7 chr11 103068356 103068653 -47714900 - AluSx SINE Alu -13 299 1 281 218 277 10 chr11 103069289 103069390 -47714163 + L2 LINE L2 3186 3313 0 1404 220 43 0 chr11 103069508 103069790 -47713763 - AluJo SINE Alu -18 294 1 382 268 104 49 chr11 103070080 103070263 -47713290 + MIR3 SINE MIR 16 208 0 364 241 37 56 chr11 103070577 103070685 -47712868 - MIR SINE MIR -128 134 29 1782 140 0 32 chr11 103070777 103071085 -47712468 - AluSc SINE Alu -11 298 1 979 94 39 0 chr11 103071090 103071218 -47712335 - AluSq/x SINE Alu -180 133 1 287 189 95 0 chr11 103071279 103071353 -47712200 + MIR SINE MIR 175 255 -7 2189 123 0 0 chr11 103071586 103071895 -47711658 - AluSx SINE Alu -3 309 1 240 286 175 0 chr11 103072726 103072789 -47710764 + L2 LINE L2 3199 3272 0 2620 169 20 2 chr11 103073774 103074223 -47709330 + LTR32 LTR ERVL 15 471 0 382 307 73 26 chr11 103074331 103074523 -47709030 + L2 LINE L2 2278 2478 -836 330 321 63 44 chr11 103074745 103074904 -47708649 - L1MEd LINE L1 -5735 384 223 2152 96 4 4 chr11 103075072 103075380 -47708173 - AluSg SINE Alu 0 308 1 1819 133 0 26 chr11 103075413 103075715 -47707838 + AluSq SINE Alu 3 296 -17 259 314 65 13 chr11 103075795 103075948 -47707605 - Charlie8 DNA MER1_type -2182 235 75 840 219 65 29 chr11 103075977 103076255 -47707298 + L1ME3 LINE L1 5869 6156 -6 22 0 0 0 chr11 103077069 103077091 -47706462 + AT_rich Low_complexity Low_complexity 1 22 0 367 246 69 34 chr11 103077478 103077653 -47705900 - L1ME LINE L1 -351 5770 5590 1917 279 69 68 chr11 103077912 103079236 -47704317 + L2 LINE L2 1991 3313 0 349 338 102 0 chr11 103079244 103079469 -47704084 - L2 LINE L2 -1062 2252 2005 2255 75 9 47 chr11 103079513 103079658 -47703895 + AluY SINE Alu 1 150 -161 2405 82 0 10 chr11 103079658 103079964 -47703589 + AluY SINE Alu 1 303 -8 2255 75 9 47 chr11 103079964 103080140 -47703413 + AluY SINE Alu 150 310 -1 180 0 0 0 chr11 103080314 103080334 -47703219 + (A)n Simple_repeat Simple_repeat 1 20 0 1803 176 13 10 chr11 103080483 103080789 -47702764 - AluJo SINE Alu -5 307 1 1896 128 48 17 chr11 103081737 103082026 -47701527 - AluJb SINE Alu -14 298 1 1948 151 7 3 chr11 103082326 103082624 -47700929 - AluSx SINE Alu -13 299 1 281 218 277 10 chr11 103083260 103083361 -47700192 + L2 LINE L2 3186 3313 0 1400 210 50 4 chr11 103083479 103083760 -47699793 - AluJo SINE Alu -18 294 1 382 268 104 49 chr11 103084050 103084233 -47699320 + MIR3 SINE MIR 16 208 0 364 241 37 56 chr11 103084547 103084655 -47698898 - MIR SINE MIR -128 134 29 2315 97 0 0 chr11 103084747 103085047 -47698506 - AluY SINE Alu -11 300 1 26 30 0 0 chr11 103085234 103085267 -47698286 + AT_rich Low_complexity Low_complexity 1 33 0 2487 85 0 0 chr11 103086009 103086315 -47697238 - AluY SINE Alu -5 306 1 420 307 100 23 chr11 103086401 103086678 -47696875 - L1MC4a LINE L1 -1932 5876 5622 2107 134 0 6 chr11 103086678 103086991 -47696562 + AluSx SINE Alu 1 311 -1 420 307 100 23 chr11 103086991 103087234 -47696319 - L1MC4a LINE L1 -2186 5622 5316 386 265 55 116 chr11 103087319 103087448 -47696105 - L1MC4a LINE L1 -924 5222 5087 1648 171 11 0 chr11 103087448 103087722 -47695831 - AluJo SINE Alu -35 277 1 386 265 55 116 chr11 103087722 103087954 -47695599 - L1MC4a LINE L1 -1059 5087 4883 370 278 151 15 chr11 103088044 103088249 -47695304 + L2 LINE L2 2611 2843 -471 263 206 0 2 chr11 103088307 103088377 -47695176 - MIR SINE MIR -89 119 51 864 151 7 0 chr11 103089447 103089593 -47693960 + AluJb SINE Alu 145 291 -21 834 189 18 12 chr11 103089842 103090006 -47693547 - FAM SINE Alu -10 165 1 26 50 0 0 chr11 103090392 103090432 -47693121 + AT_rich Low_complexity Low_complexity 1 40 0 653 317 63 33 chr11 103090617 103091077 -47692476 - PABL_B-int LTR ERV1 -418 6704 6231 2218 122 3 0 chr11 103091224 103091527 -47692026 + AluSx SINE Alu 1 304 -8 300 24 0 24 chr11 103091749 103091790 -47691763 + (TTTTG)n Simple_repeat Simple_repeat 2 85 0 2021 144 0 0 chr11 103091790 103092074 -47691479 - AluSx SINE Alu -28 284 1 320 336 15 15 chr11 103092211 103092342 -47691211 - PABL_B-int LTR ERV1 -1359 5763 5633 2032 129 10 13 chr11 103092648 103092951 -47690602 - AluSx SINE Alu -10 302 1 1182 108 0 6 chr11 103093355 103093512 -47690041 + AluSg SINE Alu 1 156 -154 8375 43 15 5 chr11 103093512 103095281 -47688272 + L1PA5 LINE L1 4377 6154 0 261 0 0 0 chr11 103095284 103095313 -47688240 + (TA)n Simple_repeat Simple_repeat 1 29 0 2217 111 0 13 chr11 103095333 103095639 -47687914 + AluSx SINE Alu 1 302 -10 1052 169 165 34 chr11 103095831 103096098 -47687455 + AluJb SINE Alu 1 302 0 810 177 0 34 chr11 103096601 103096748 -47686805 + AluJo SINE Alu 2 143 -169 1899 136 3 40 chr11 103096748 103097050 -47686503 + AluJb SINE Alu 1 291 -21 1838 150 13 27 chr11 103097080 103097380 -47686173 - AluJb SINE Alu -16 296 1 207 88 0 0 chr11 103097385 103097419 -47686134 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 1664 187 11 7 chr11 103097421 103097705 -47685848 - MLT1A1 LTR MaLR -52 313 29 239 308 77 8 chr11 103097705 103097835 -47685718 + L1M3de LINE L1 1841 1979 -4674 330 148 0 19 chr11 103098132 103098186 -47685367 - FLAM_A SINE Alu -66 67 15 2476 93 3 0 chr11 103098250 103098562 -47684991 - AluSp SINE Alu 0 313 1 302 286 43 43 chr11 103098595 103098756 -47684797 - L1MDa LINE L1 -6205 335 175 1366 179 8 0 chr11 103098797 103099031 -47684522 - AluJb SINE Alu -1 311 76 6632 175 125 80 chr11 103099649 103101308 -47682245 + MER52A LTR ERV1 21 1755 0 481 167 0 0 chr11 103101309 103101387 -47682166 - AluJb SINE Alu -233 79 2 1982 165 58 39 chr11 103101583 103102121 -47681432 - MLT2A2 LTR ERVL -3 551 2 1759 167 0 7 chr11 103102121 103102402 -47681151 - AluJb SINE Alu -33 279 1 2226 127 19 68 chr11 103102457 103102772 -47680781 - MER57A LTR ERV1 0 403 113 4312 87 17 18 chr11 103102772 103103373 -47680180 - MER4A LTR ERV1 0 600 1 2226 127 19 68 chr11 103103373 103103481 -47680072 - MER57A LTR ERV1 -290 113 1 2227 131 0 0 chr11 103103508 103103814 -47679739 + AluSx SINE Alu 1 306 -6 1021 284 14 25 chr11 103103874 103104159 -47679394 + LTR48 LTR ERV1 2 283 -504 6968 149 35 1 chr11 103104322 103105394 -47678159 - ERVL LTR ERVL -2091 3673 2565 1686 194 110 37 chr11 103106847 103107311 -47676242 - MLT1D LTR MaLR -7 498 1 589 296 58 84 chr11 103109188 103109533 -47674020 - MLT1K LTR MaLR -106 482 147 26 0 0 0 chr11 103109565 103109591 -47673962 + AT_rich Low_complexity Low_complexity 1 26 0 512 199 9 0 chr11 103109599 103110044 -47673509 + (TTAA)n Simple_repeat Simple_repeat 1 449 0 1784 196 67 0 chr11 103110069 103110411 -47673142 - MLT1A1 LTR MaLR 0 365 1 444 308 39 6 chr11 103110568 103110750 -47672803 + MIR SINE MIR 20 207 -55 348 64 0 0 chr11 103110812 103110859 -47672694 + (CA)n Simple_repeat Simple_repeat 1 47 0 514 311 93 18 chr11 103111090 103111315 -47672238 - MIR SINE MIR -8 254 13 1860 154 9 119 chr11 103111703 103111804 -47671749 + MLT1B LTR MaLR 3 114 -276 2093 123 3 10 chr11 103111804 103112104 -47671449 + AluSx SINE Alu 1 298 -14 1860 154 9 119 chr11 103112104 103112194 -47671359 + MLT1B LTR MaLR 114 212 -178 1600 206 0 25 chr11 103112194 103112514 -47671039 + AluJo SINE Alu 1 312 0 1860 154 9 119 chr11 103112514 103112757 -47670796 + MLT1B LTR MaLR 212 390 0 385 254 31 47 chr11 103112977 103113170 -47670383 - MER117 DNA MER1_type 0 197 8 770 216 107 87 chr11 103113312 103113622 -47669931 + MLT1J LTR MaLR 196 511 0 327 212 194 65 chr11 103113731 103113901 -47669652 + MLT1J LTR MaLR 118 309 -202 1886 163 7 0 chr11 103113945 103114233 -47669320 + AluJo SINE Alu 14 303 -9 364 264 138 35 chr11 103114237 103114411 -47669142 + MLT1L LTR MaLR 413 604 -11 1960 185 79 9 chr11 103114490 103114754 -47668799 - MLT1C LTR MaLR 0 467 160 438 20 0 0 chr11 103114754 103114805 -47668748 + (TG)n Simple_repeat Simple_repeat 2 52 0 1960 185 79 9 chr11 103114805 103114972 -47668581 - MLT1C LTR MaLR -307 160 6 609 266 46 29 chr11 103115908 103116260 -47667293 - L1ME2 LINE L1 -219 5945 5594 482 297 87 11 chr11 103116260 103116526 -47667027 - L1ME2 LINE L1 -978 5168 4883 236 217 36 48 chr11 103116957 103117040 -47666513 + MIR SINE MIR 110 191 -71 1196 138 64 43 chr11 103117237 103117516 -47666037 - THE1C LTR MaLR 0 375 32 3917 77 30 38 chr11 103117516 103118074 -47665479 + MER41A LTR ERV1 1 554 0 1196 138 64 43 chr11 103118074 103118107 -47665446 - THE1C LTR MaLR -343 32 1 911 249 56 112 chr11 103118142 103118641 -47664912 + MLT1H LTR MaLR 75 545 -4 700 101 0 10 chr11 103120312 103120411 -47663142 + MER4A LTR ERV1 1 98 -566 1826 127 162 73 chr11 103120411 103120782 -47662771 + MER4A LTR ERV1 261 664 0 252 0 0 0 chr11 103121109 103121137 -47662416 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 7185 52 3 3 chr11 103121138 103122226 -47661327 - L1PA5 LINE L1 -13 6141 5057 351 183 6 148 chr11 103122434 103122603 -47660950 - L1MC4 LINE L1 -6 8036 7892 496 222 37 0 chr11 103122662 103122770 -47660783 - FLAM_A SINE Alu -17 116 5 944 162 110 123 chr11 103122777 103123085 -47660468 - L1MC4 LINE L1 -143 7899 7596 493 236 51 70 chr11 103123126 103123283 -47660270 + MER63A DNA MER1_type 57 210 0 3589 169 53 65 chr11 103123294 103123325 -47660228 - L1MC4 LINE L1 -442 7600 7570 185 0 0 39 chr11 103123325 103123351 -47660202 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3589 169 53 65 chr11 103123351 103124236 -47659317 - L1MC4 LINE L1 -472 7570 6695 288 0 0 0 chr11 103124237 103124269 -47659284 + (CA)n Simple_repeat Simple_repeat 2 33 0 696 268 156 20 chr11 103124301 103124603 -47658950 + LTR16A LTR ERVL 105 447 -3 201 74 0 0 chr11 103124603 103124630 -47658923 + (CA)n Simple_repeat Simple_repeat 2 28 0 267 247 141 0 chr11 103124636 103124721 -47658832 - L1MC4 LINE L1 -1410 6632 6536 494 186 21 0 chr11 103125600 103125697 -47657856 - MLT2E LTR ERVL 0 628 530 396 0 0 0 chr11 103127255 103127299 -47656254 + (TG)n Simple_repeat Simple_repeat 1 44 0 3848 114 65 11 chr11 103127557 103127980 -47655573 - MER39B LTR ERV1 0 653 185 2053 135 0 3 chr11 103127980 103128283 -47655270 + AluSx SINE Alu 1 302 -10 3848 114 65 11 chr11 103128283 103128479 -47655074 - MER39B LTR ERV1 -468 185 1 22 0 0 0 chr11 103129054 103129076 -47654477 + AT_rich Low_complexity Low_complexity 1 22 0 2367 81 0 14 chr11 103129083 103129219 -47654334 + AluSp SINE Alu 1 137 -176 2196 116 0 10 chr11 103129219 103129529 -47654024 + AluSc SINE Alu 1 307 -2 2367 81 0 14 chr11 103129529 103129689 -47653864 + AluSp SINE Alu 137 293 -20 186 71 0 0 chr11 103129882 103129910 -47653643 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 722 213 0 0 chr11 103130786 103130942 -47652611 - FRAM SINE Alu 0 166 11 424 295 0 26 chr11 103130959 103131115 -47652438 - L3 LINE CR1 -685 892 741 1258 169 28 16 chr11 103131306 103131555 -47651998 + L1PA8 LINE L1 5916 6167 -5 258 248 41 41 chr11 103131556 103131677 -47651876 + L1ME3A LINE L1 5828 5948 -222 3232 213 29 58 chr11 103132866 103133355 -47650198 - L1ME1 LINE L1 -4 6162 5660 2015 148 0 0 chr11 103133355 103133653 -47649900 + AluSx SINE Alu 1 298 -14 3232 213 29 58 chr11 103133653 103134025 -47649528 - L1ME1 LINE L1 -506 5660 5327 1588 201 10 13 chr11 103134025 103134324 -47649229 + AluJo SINE Alu 1 298 -14 3232 213 29 58 chr11 103134324 103134386 -47649167 - L1ME1 LINE L1 -839 5327 5265 2329 116 0 0 chr11 103134491 103134793 -47648760 - AluSq SINE Alu -11 302 1 741 199 124 26 chr11 103134961 103135187 -47648366 - MER112 DNA MER1_type -6 254 7 399 279 58 47 chr11 103135226 103135398 -47648155 + MIR SINE MIR 3 176 -86 234 382 69 7 chr11 103135407 103135551 -47648002 - MER91A DNA MER1_type -25 171 19 991 133 185 0 chr11 103135749 103135944 -47647609 + L1MB5 LINE L1 5729 5959 -215 1769 172 36 3 chr11 103136091 103136393 -47647160 - AluJo SINE Alu 0 312 1 1783 220 8 0 chr11 103136393 103136793 -47646760 - L1P LINE L1 -815 5331 4929 2441 107 39 0 chr11 103136797 103137152 -47646401 + L1PA16 LINE L1 5590 5958 -208 199 213 43 0 chr11 103137389 103137436 -47646117 - L3 LINE CR1 -192 1385 1337 1213 152 30 0 chr11 103137471 103137668 -47645885 + L1PA16 LINE L1 5955 6157 -9 310 212 15 0 chr11 103138259 103138325 -47645228 + MIR SINE MIR 78 144 -118 1648 162 3 40 chr11 103138330 103138632 -47644921 + AluJo SINE Alu 1 291 -21 1751 141 54 4 chr11 103138633 103138910 -47644643 + AluJb SINE Alu 1 291 -21 332 282 22 77 chr11 103139037 103139218 -47644335 - MIR SINE MIR -86 176 6 273 240 215 8 chr11 103139674 103139795 -47643758 + L3 LINE CR1 1240 1385 -192 371 275 11 0 chr11 103140041 103140132 -47643421 - MIR SINE MIR -25 237 146 226 274 0 0 chr11 103140525 103140576 -47642977 + (TA)n Simple_repeat Simple_repeat 2 52 0 280 315 83 42 chr11 103141198 103141414 -47642139 + L3b LINE CR1 1136 1360 -223 210 180 27 0 chr11 103141762 103141818 -47641735 + MIR SINE MIR 105 164 -64 596 175 13 0 chr11 103141818 103141972 -47641581 + CT-rich Low_complexity Low_complexity 4 159 0 742 163 157 0 chr11 103141973 103142120 -47641433 - AluSg/x SINE Alu -2 307 138 9759 152 38 7 chr11 103142227 103144142 -47639411 + ERVL-B1 LTR ERVL 3779 5750 -14 1049 193 37 10 chr11 103144148 103144409 -47639144 + MLT2B1 LTR ERVL 1 273 -191 2168 117 0 7 chr11 103145419 103145719 -47637834 - AluSq SINE Alu -15 298 1 31 0 0 0 chr11 103145884 103145915 -47637638 + AT_rich Low_complexity Low_complexity 1 31 0 618 112 17 9 chr11 103147046 103147162 -47636391 + (GGAA)n Simple_repeat Simple_repeat 4 120 0 1289 121 0 16 chr11 103147300 103147482 -47636071 - AluJb SINE Alu -5 307 129 2091 136 13 0 chr11 103147743 103148051 -47635502 + AluSx SINE Alu 1 312 0 2252 106 0 0 chr11 103148127 103148420 -47635133 - AluSx SINE Alu -19 293 1 1379 121 10 0 chr11 103148505 103148704 -47634849 - L1P4 LINE L1 -582 5584 5384 479 130 76 0 chr11 103148953 103149045 -47634508 + L1MB4 LINE L1 6073 6171 -9 21 36 0 0 chr11 103149899 103149927 -47633626 + AT_rich Low_complexity Low_complexity 1 28 0 189 317 110 12 chr11 103150077 103150159 -47633394 - L2 LINE L2 -57 3256 3167 4914 110 28 6 chr11 103150330 103151039 -47632514 - L1PA16 LINE L1 -9 6157 5433 379 261 158 54 chr11 103201163 103201404 -47582149 + L2 LINE L2 3003 3268 -4 210 290 48 16 chr11 103201456 103201580 -47581973 + L3 LINE CR1 1448 1575 -2 796 209 157 23 chr11 103202638 103203011 -47580542 + Charlie4 DNA MER1_type 1 1884 -77 1119 216 11 26 chr11 103203011 103203279 -47580274 + L1MD3 LINE L1 7677 7940 -55 317 284 88 20 chr11 103203483 103203631 -47579922 + MIR SINE MIR 31 188 -74 404 250 125 0 chr11 103203677 103203797 -47579756 - MIR SINE MIR -18 244 110 409 214 34 11 chr11 103204104 103204193 -47579360 - MER58B DNA MER1_type -3 338 248 279 239 68 57 chr11 103204430 103204518 -47579035 + MIR3 SINE MIR 109 197 -11 252 333 0 0 chr11 103205745 103205841 -47577712 - MIR SINE MIR 0 262 167 226 279 15 0 chr11 103206005 103206073 -47577480 - MIR SINE MIR -11 251 183 213 320 0 27 chr11 103207174 103207324 -47576229 + CT-rich Low_complexity Low_complexity 4 149 0 187 324 88 20 chr11 103209355 103209457 -47574096 - L2 LINE L2 -27 3245 3137 341 292 69 28 chr11 103210927 103211071 -47572482 + L2 LINE L2 3163 3312 -1 1297 203 21 0 chr11 103212781 103213018 -47570535 - MLT1E LTR MaLR 0 593 352 541 134 131 29 chr11 103213015 103213152 -47570401 - MLT1E LTR MaLR -438 155 61 * 2232 104 0 10 chr11 103215889 103216198 -47567355 + AluSg SINE Alu 1 306 -4 457 130 282 15 chr11 103216214 103216345 -47567208 - MER33 DNA MER1_type -5 358 193 9049 42 10 0 chr11 103216351 103218173 -47565380 - L1PA5 LINE L1 -5 6149 4316 6587 50 11 2 chr11 103218173 103218986 -47564567 + L1P LINE L1 3460 4279 -1867 727 176 79 18 chr11 103218986 103219151 -47564402 - MER33 DNA MER1_type -144 180 6 1535 138 28 4 chr11 103219548 103219795 -47563758 - MER31A LTR ERV1 0 485 233 214 273 182 10 chr11 103220353 103220452 -47563101 - L2 LINE L2 0 3313 3198 211 276 172 0 chr11 103220518 103220605 -47562948 + MIR3 SINE MIR 103 204 -4 254 250 188 0 chr11 103220664 103220744 -47562809 - MIR SINE MIR -6 256 162 379 291 174 10 chr11 103220773 103220969 -47562584 + MIR SINE MIR 18 245 -17 240 303 218 18 chr11 103221075 103221240 -47562313 + MIR SINE MIR 7 204 -58 1283 172 141 53 chr11 103221919 103222238 -47561315 - MER7A DNA MER2_type -1 345 1 298 273 55 18 chr11 103222619 103222729 -47560824 + MIR SINE MIR 146 259 -3 740 148 0 0 chr11 103222792 103222900 -47560653 - AluSp/q SINE Alu -4 309 202 553 301 17 11 chr11 103223292 103223468 -47560085 + MER5A DNA MER1_type 13 189 0 2648 86 23 3 chr11 103223900 103224248 -47559305 + THE1A LTR MaLR 1 355 0 1777 199 30 19 chr11 103224319 103224680 -47558873 - MLT1A1 LTR MaLR 0 365 1 215 125 0 0 chr11 103224727 103224759 -47558794 - MIR SINE MIR -112 150 119 234 279 116 54 chr11 103225145 103225274 -47558279 + MIR SINE MIR 10 146 -116 352 293 122 12 chr11 103225345 103225509 -47558044 + MER5A DNA MER1_type 2 183 -6 340 250 125 53 chr11 103226724 103226932 -47556621 + MIR SINE MIR 10 232 -30 2073 133 3 10 chr11 103227316 103227618 -47555935 + AluSq SINE Alu 9 308 -5 792 254 229 0 chr11 103227972 103228247 -47555306 + MLT1I LTR MaLR 72 409 0 222 373 127 9 chr11 103228278 103228388 -47555165 + L2 LINE L2 3125 3247 -25 243 103 0 0 chr11 103228630 103228669 -47554884 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 347 273 88 62 chr11 103228692 103228919 -47554634 - L2 LINE L2 -1 3312 3080 438 294 98 22 chr11 103228938 103229122 -47554431 + MIR SINE MIR 10 207 -55 700 184 12 71 chr11 103229133 103229301 -47554252 + MLT1A2 LTR MaLR 213 370 -4 210 250 0 0 chr11 103229420 103229460 -47554093 - MIR3 SINE MIR -50 158 119 21 57 0 0 chr11 103230183 103230218 -47553335 + AT_rich Low_complexity Low_complexity 1 35 0 443 246 100 9 chr11 103230251 103230361 -47553192 + L1MA8 LINE L1 5 124 -6017 452 118 0 0 chr11 103230361 103230429 -47553124 - AluS SINE Alu -10 300 233 5595 232 81 24 chr11 103230430 103230509 -47553044 + L1MA8 LINE L1 113 186 -6025 1700 187 7 13 chr11 103230509 103230641 -47552912 + AluJo SINE Alu 1 132 -180 180 0 0 0 chr11 103230641 103230661 -47552892 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1700 187 7 13 chr11 103230661 103230833 -47552720 + AluJo SINE Alu 132 303 -9 5595 232 81 24 chr11 103230833 103232589 -47550964 + L1MA8 LINE L1 186 2044 -4167 11767 149 54 24 chr11 103232666 103233634 -47549919 + L1MA8 LINE L1 3010 3947 -2408 2211 126 0 0 chr11 103233634 103233935 -47549618 - AluSq SINE Alu -12 301 1 11767 149 54 24 chr11 103233935 103235723 -47547830 + L1MA8 LINE L1 3947 5680 -675 276 30 0 0 chr11 103235723 103235756 -47547797 + (CA)n Simple_repeat Simple_repeat 2 34 0 11767 149 54 24 chr11 103235756 103236071 -47547482 + L1MA8 LINE L1 5680 5984 -371 7385 74 7 1 chr11 103236071 103237767 -47545786 + L1PA11 LINE L1 4470 6173 -1 11767 149 54 24 chr11 103237767 103237920 -47545633 + L1MA8 LINE L1 5984 6334 -21 250 303 50 10 chr11 103238838 103238937 -47544616 - L3 LINE CR1 -470 1107 1005 741 274 50 0 chr11 103239801 103239980 -47543573 + MER5A DNA MER1_type 1 188 -1 1609 170 26 0 chr11 103240001 103240266 -47543287 - AluJo SINE Alu -34 278 7 219 260 20 0 chr11 103241288 103241338 -47542215 - MIR3 SINE MIR -1 207 157 265 276 98 65 chr11 103241527 103241650 -47541903 + MER91C DNA MER1_type 9 135 -5 299 277 189 31 chr11 103242216 103242375 -47541178 - MIR SINE MIR -42 220 37 227 371 21 0 chr11 103242465 103242562 -47540991 + MLT1J1 LTR MaLR 64 162 -284 5863 165 30 4 chr11 103242647 103244626 -47538927 - L1PA16 LINE L1 -10 6156 4123 430 286 5 21 chr11 103244648 103244829 -47538724 + MLT1I LTR MaLR 275 408 -1 521 275 42 0 chr11 103245871 103245991 -47537562 - L2 LINE L2 -6 3266 3142 5725 145 20 32 chr11 103246200 103247284 -47536269 - MER11C LTR ERVK 0 1071 1 505 290 53 12 chr11 103248473 103248642 -47534911 + MIR3 SINE MIR 20 195 -13 1027 227 96 26 chr11 103248667 103249010 -47534543 + MLT2C1 LTR ERVL 1 367 -30 512 277 25 0 chr11 103249061 103249180 -47534373 + MIR SINE MIR 48 169 -93 186 212 0 0 chr11 103249336 103249369 -47534184 + L2 LINE L2 3219 3251 -21 2380 211 108 64 chr11 103250298 103250583 -47532970 - L1MC5 LINE L1 -49 7912 7641 507 75 32 0 chr11 103250583 103250677 -47532876 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 2380 211 108 64 chr11 103250677 103250960 -47532593 - L1MC5 LINE L1 -320 7641 7372 252 0 0 0 chr11 103250960 103250988 -47532565 + (TG)n Simple_repeat Simple_repeat 1 28 0 2380 211 108 64 chr11 103250988 103251492 -47532061 - L1MC5 LINE L1 -589 7372 6792 1659 196 48 13 chr11 103251494 103251887 -47531666 - MLT1C LTR MaLR 0 467 61 280 301 43 0 chr11 103252453 103252546 -47531007 + MIR SINE MIR 65 161 -101 434 240 66 25 chr11 103252560 103252681 -47530872 - L2 LINE L2 -3 3310 3185 33 0 0 0 chr11 103253486 103253519 -47530034 + AT_rich Low_complexity Low_complexity 1 33 0 426 336 72 83 chr11 103254404 103254859 -47528694 - L2 LINE L2 -18 3254 2805 * 457 285 65 0 chr11 103254856 103254979 -47528574 + MIR SINE MIR 95 225 -37 2028 249 88 2 chr11 103255270 103255905 -47527648 - L1ME3A LINE L1 -5 6165 5476 211 316 140 44 chr11 103256036 103256264 -47527289 - L2 LINE L2 -2 3270 3021 2241 83 25 9 chr11 103256292 103256619 -47526934 + THE1C LTR MaLR 44 375 0 1784 192 3 0 chr11 103256619 103256942 -47526611 - MLT1A1 LTR MaLR -41 324 1 320 326 34 34 chr11 103256942 103257120 -47526433 - L3 LINE CR1 -437 1140 963 667 243 21 0 chr11 103257141 103257309 -47526244 + MLT1J2 LTR MaLR 33 247 -264 253 270 103 29 chr11 103257337 103257511 -47526042 + MLT1J2 LTR MaLR 264 450 0 21 36 0 0 chr11 103258302 103258330 -47525223 + AT_rich Low_complexity Low_complexity 1 28 0 214 197 0 0 chr11 103258346 103258383 -47525170 - MIR SINE MIR -114 148 113 3027 55 3 0 chr11 103258819 103259203 -47524350 - L1PA4 LINE L1 -1 6154 5770 40429 37 24 0 chr11 103259203 103265207 -47518346 - L1PA2 LINE L1 -3 6152 1 18505 33 3 1 chr11 103265207 103267957 -47515596 - L1PA4 LINE L1 -372 5782 3028 587 225 0 58 chr11 103267959 103268097 -47515456 - MER5B DNA MER1_type -48 130 1 3554 87 27 25 chr11 103269558 103270119 -47513434 + L1MA3 LINE L1 5744 6305 0 632 236 17 53 chr11 103270120 103270401 -47513152 + L1ME2 LINE L1 5900 6154 -12 1240 224 102 76 chr11 103270401 103270929 -47512624 + MLT1F LTR MaLR 1 542 0 384 354 43 18 chr11 103271450 103271614 -47511939 + MIR SINE MIR 21 188 -74 1320 168 92 7 chr11 103271615 103271919 -47511634 + L1ME1 LINE L1 5832 6161 -5 4686 102 52 95 chr11 103273190 103273831 -47509722 - Tigger3b DNA MER2_type -1797 1231 564 1876 146 11 7 chr11 103273831 103274118 -47509435 + AluSx SINE Alu 1 288 -24 4686 102 52 95 chr11 103274118 103274224 -47509329 - Tigger3b DNA MER2_type -2464 564 455 2208 103 7 3 chr11 103274224 103274524 -47509029 + AluY SINE Alu 1 301 -10 4686 102 52 95 chr11 103274524 103274768 -47508785 - Tigger3b DNA MER2_type -2573 455 281 37913 68 12 10 chr11 103274778 103280894 -47502659 + L1PA5 LINE L1 2 6133 -21 1648 151 46 3 chr11 103280894 103281198 -47502355 - Tigger3b DNA MER2_type -914 317 1 480 253 167 23 chr11 103281231 103281405 -47502148 - MIR SINE MIR 0 262 64 236 193 104 67 chr11 103282512 103282647 -47500906 - L1MC/D LINE L1 -2325 5483 5344 406 289 57 61 chr11 103282654 103282789 -47500764 - L1MC/D LINE L1 -846 5300 5165 2361 88 3 7 chr11 103282789 103283094 -47500459 - AluSc SINE Alu -5 304 1 406 289 57 61 chr11 103283094 103283221 -47500332 - L1MC/D LINE L1 -981 5165 5039 635 329 81 10 chr11 103283309 103283616 -47499937 + L2 LINE L2 1043 1371 -1943 811 225 48 9 chr11 103283616 103283843 -47499710 - L1MB2 LINE L1 -1 6170 5935 11036 163 42 8 chr11 103283854 103286494 -47497059 - L1MA6 LINE L1 0 6504 3732 2480 62 7 13 chr11 103286494 103286799 -47496754 - AluY SINE Alu -8 303 1 11036 163 42 8 chr11 103286799 103287398 -47496155 - L1MA6 LINE L1 -2772 3732 3155 1742 192 47 47 chr11 103287401 103287995 -47495558 - L1MA6 LINE L1 -3968 2382 1789 2026 252 49 9 chr11 103288008 103288789 -47494764 - L1MA6 LINE L1 -4467 1884 1094 728 332 35 26 chr11 103289153 103289611 -47493942 - L1MA6 LINE L1 -5819 462 1 * 5619 196 37 33 chr11 103289608 103291299 -47492254 - L1MB2 LINE L1 -211 5960 4278 207 0 0 0 chr11 103291299 103291322 -47492231 + (TG)n Simple_repeat Simple_repeat 2 24 0 5619 196 37 33 chr11 103291322 103291562 -47491991 - L1MB2 LINE L1 -1893 4278 4041 1441 212 14 18 chr11 103291562 103291845 -47491708 - AluJo SINE Alu -30 282 1 5619 196 37 33 chr11 103291845 103292197 -47491356 - L1MB2 LINE L1 -2130 4041 3661 12633 186 13 26 chr11 103292333 103294508 -47489045 + L1PB1 LINE L1 2232 4433 -1718 276 30 0 0 chr11 103294508 103294541 -47489012 + (CA)n Simple_repeat Simple_repeat 1 33 0 12633 186 13 26 chr11 103294541 103295262 -47488291 + L1PB1 LINE L1 4433 5162 -989 186 43 0 0 chr11 103295262 103295285 -47488268 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 12633 186 13 26 chr11 103295285 103295639 -47487914 + L1PB1 LINE L1 5162 5519 -632 8263 80 12 1 chr11 103295639 103297498 -47486055 + L1PA7 LINE L1 4288 6154 0 12633 186 13 26 chr11 103297498 103297943 -47485610 + L1PB1 LINE L1 5519 5885 -266 479 99 9 135 chr11 103298068 103298179 -47485374 - MER33 DNA MER1_type -1 323 227 1048 164 0 0 chr11 103298179 103298344 -47485209 - FRAM SINE Alu -8 168 4 933 176 113 0 chr11 103298347 103298551 -47485002 - MER33 DNA MER1_type -89 235 9 420 174 0 29 chr11 103298575 103298644 -47484909 - AluJ/FRAM SINE Alu -21 291 225 726 281 88 31 chr11 103299396 103299656 -47483897 - MLT1G1 LTR MaLR 0 595 321 336 271 67 67 chr11 103299739 103299978 -47483575 - MLT1G1 LTR MaLR -288 267 31 1815 155 4 4 chr11 103300233 103300510 -47483043 - AluJo SINE Alu -12 300 24 509 340 48 15 chr11 103300597 103300803 -47482750 + MIR SINE MIR 23 235 -27 223 360 105 7 chr11 103301553 103301706 -47481847 + MIR SINE MIR 6 173 -89 304 266 168 31 chr11 103301847 103302182 -47481371 - MLT1L LTR MaLR -199 416 12 242 234 85 43 chr11 103302195 103302289 -47481264 + MIR SINE MIR 165 262 0 23 54 0 0 chr11 103302332 103302369 -47481184 + AT_rich Low_complexity Low_complexity 1 37 0 190 176 0 0 chr11 103302454 103302488 -47481065 - L2 LINE L2 -13 3300 3267 557 273 65 0 chr11 103303047 103303228 -47480325 - MIR SINE MIR -41 221 30 416 301 78 12 chr11 103304016 103304182 -47479371 - MIR SINE MIR -45 217 41 269 277 169 7 chr11 103304218 103304366 -47479187 - L3 LINE CR1 -716 861 690 216 135 0 0 chr11 103305829 103305866 -47477687 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 190 231 0 0 chr11 103306254 103306293 -47477260 - MIR SINE MIR -174 88 50 289 338 43 48 chr11 103307020 103307227 -47476326 - MIR SINE MIR -6 256 51 198 296 70 28 chr11 103307204 103307275 -47476278 + L2 LINE L2 3240 3313 0 * 388 329 96 0 chr11 103307761 103307907 -47475646 + MIR SINE MIR 9 168 -94 1013 306 14 62 chr11 103308284 103308705 -47474848 - MLT1J1 LTR MaLR -2 444 44 485 271 117 16 chr11 103308762 103308950 -47474603 + MER112 DNA MER1_type 53 259 -1 692 287 91 18 chr11 103310095 103310426 -47473127 + L2 LINE L2 2959 3313 0 225 0 0 0 chr11 103311328 103311353 -47472200 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 2385 48 41 7 chr11 103311660 103311955 -47471598 - AluY SINE Alu -6 305 1 809 213 58 6 chr11 103312580 103312754 -47470799 - MLT1A1 LTR MaLR 0 374 192 860 119 16 0 chr11 103312794 103312920 -47470633 - AluSg/x SINE Alu -5 307 180 941 146 7 7 chr11 103312930 103313081 -47470472 - MLT1A1 LTR MaLR -214 151 1 195 236 0 36 chr11 103313615 103313670 -47469883 - MER5A DNA MER1_type -1 188 136 450 179 0 12 chr11 103313674 103313758 -47469795 + L1M4c LINE L1 1519 1601 -4783 394 271 21 10 chr11 103313759 103313855 -47469698 + MER5A DNA MER1_type 71 167 -22 255 226 16 0 chr11 103314004 103314066 -47469487 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 252 320 93 0 chr11 103314203 103314300 -47469253 - MIR SINE MIR 0 262 157 22 0 0 0 chr11 103314325 103314347 -47469206 + AT_rich Low_complexity Low_complexity 1 22 0 434 255 130 30 chr11 103314484 103314684 -47468869 + L1ME4a LINE L1 5618 5837 -284 2839 270 84 54 chr11 103314947 103316388 -47467165 + L1M4 LINE L1 5 1552 -4092 6241 149 20 23 chr11 103316600 103318640 -47464913 + L1PB1 LINE L1 4128 6148 -3 2816 218 136 34 chr11 103318662 103319119 -47464434 + L1M4 LINE L1 1458 1867 -4779 2235 128 0 0 chr11 103319119 103319431 -47464122 + AluSx SINE Alu 1 312 0 2816 218 136 34 chr11 103319431 103319943 -47463610 + L1M4 LINE L1 1867 2526 -4120 410 242 37 62 chr11 103320284 103320335 -47463218 + MER103 DNA DNA 8 59 -107 2283 97 0 19 chr11 103320335 103320645 -47462908 + AluSx SINE Alu 1 304 -8 410 242 37 62 chr11 103320645 103320754 -47462799 + MER103 DNA DNA 59 164 -2 184 267 83 17 chr11 103321017 103321077 -47462476 + MIR SINE MIR 3 66 -196 360 283 9 0 chr11 103321089 103321195 -47462358 - MLT2C1 LTR ERVL -276 121 15 1092 199 19 5 chr11 103321201 103321412 -47462141 - ERVL-C1 LTR ERVL -3 5761 5548 2105 127 0 37 chr11 103321420 103321742 -47461811 + MER7A DNA MER2_type 39 346 0 1891 167 3 7 chr11 103321766 103322065 -47461488 + AluJo SINE Alu 1 298 -14 180 206 250 0 chr11 103322111 103322179 -47461374 + MIR SINE MIR 92 176 -86 421 300 85 119 chr11 103323534 103323944 -47459609 - L2 LINE L2 -5 3267 2872 208 236 18 18 chr11 103324263 103324318 -47459235 + MIR3 SINE MIR 11 65 -143 300 333 70 50 chr11 103324363 103324439 -47459114 - L2 LINE L2 0 3272 3199 2207 118 46 40 chr11 103324439 103324812 -47458741 + THE1C LTR MaLR 1 375 0 300 333 70 50 chr11 103324812 103325221 -47458332 - L2 LINE L2 -73 3199 2777 805 292 155 39 chr11 103325223 103325925 -47457628 - L2 LINE L2 -823 2491 1708 2477 91 0 0 chr11 103325964 103326272 -47457281 + AluSx SINE Alu 1 308 -4 251 175 35 35 chr11 103326793 103326907 -47456646 + GA-rich Low_complexity Low_complexity 4 117 0 241 260 13 26 chr11 103326919 103326996 -47456557 + GA-rich Low_complexity Low_complexity 1 76 0 2281 114 0 16 chr11 103327235 103327552 -47456001 + AluSx SINE Alu 1 312 0 211 349 114 8 chr11 103327980 103328112 -47455441 - L2 LINE L2 -482 2832 2687 24 32 0 0 chr11 103328267 103328298 -47455255 + AT_rich Low_complexity Low_complexity 1 31 0 2803 127 83 11 chr11 103328396 103328867 -47454686 + L1PB4 LINE L1 5652 6156 0 342 294 183 6 chr11 103328880 103329060 -47454493 - L2 LINE L2 -618 2696 2485 240 35 0 0 chr11 103329693 103329722 -47453831 + (TCCC)n Simple_repeat Simple_repeat 2 30 0 193 171 98 0 chr11 103329738 103329779 -47453774 - L3b LINE CR1 -236 1347 1303 209 197 33 49 chr11 103330284 103330345 -47453208 + MIR SINE MIR 25 84 -124 214 258 30 0 chr11 103330683 103330749 -47452804 - L3b LINE CR1 -405 1178 1111 456 296 117 9 chr11 103331136 103331349 -47452204 - MIR SINE MIR -17 245 10 324 336 28 9 chr11 103333628 103333735 -47449818 + MIR SINE MIR 36 144 -64 4568 222 79 34 chr11 103334615 103335689 -47447864 + MLT1E-int LTR MaLR 584 1706 -29 1941 118 17 3 chr11 103335689 103335976 -47447577 + Tigger1 DNA MER2_type 459 749 -1669 1730 150 26 0 chr11 103335979 103336252 -47447301 + Tigger1 DNA MER2_type 2138 2417 -1 1697 234 33 121 chr11 103336275 103336895 -47446658 + MLT1E LTR MaLR 7 570 -23 1708 198 95 19 chr11 103336895 103337263 -47446290 + MSTD LTR MaLR 1 396 0 1697 234 33 121 chr11 103337263 103337286 -47446267 + MLT1E LTR MaLR 570 593 0 1671 206 56 26 chr11 103337404 103337835 -47445718 + MER89 LTR ERV1 6 549 -10 814 208 10 25 chr11 103339478 103339680 -47443873 - L1MDa LINE L1 -2509 4031 3833 822 131 16 8 chr11 103339687 103339809 -47443744 - AluJb SINE Alu -187 125 3 685 278 44 4 chr11 103339821 103340048 -47443505 - L1MDa LINE L1 -2705 3835 3600 483 206 6 69 chr11 103340255 103340302 -47443251 - L1MDa LINE L1 -2931 3609 3561 2448 83 3 3 chr11 103340302 103340614 -47442939 - AluSp SINE Alu -1 312 1 483 206 6 69 chr11 103340614 103340741 -47442812 - L1MDa LINE L1 -2979 3561 3446 2002 193 64 2 chr11 103340757 103341150 -47442403 - LTR32 LTR ERVL -40 431 15 2208 106 6 16 chr11 103341176 103341488 -47442065 - AluSg SINE Alu -1 309 1 2460 241 52 9 chr11 103341488 103342219 -47441334 - L1MDa LINE L1 -3110 3430 2669 1245 200 0 13 chr11 103342219 103342454 -47441099 - AluJo SINE Alu -16 296 65 884 238 159 35 chr11 103342475 103342664 -47440889 - L1MDa LINE L1 -4443 2097 1933 2084 196 5 18 chr11 103342664 103343057 -47440496 - MLT1B LTR MaLR 0 390 3 884 238 159 35 chr11 103343057 103343292 -47440261 - L1MDa LINE L1 -4607 1933 1623 2513 158 37 42 chr11 103343325 103343488 -47440065 - L1ME LINE L1 -461 5660 5498 2613 40 0 7 chr11 103343488 103343788 -47439765 - L1PA3 LINE L1 0 6155 5858 216 0 0 0 chr11 103343788 103343812 -47439741 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 18950 31 9 1 chr11 103343812 103346728 -47436825 - L1PA3 LINE L1 -8 6147 3213 2513 158 37 42 chr11 103346728 103346861 -47436692 - L1ME LINE L1 -620 5501 3140 1248 296 69 24 chr11 103346869 103347332 -47436221 - L2 LINE L2 0 3313 2830 21 36 0 0 chr11 103347529 103347557 -47435996 + AT_rich Low_complexity Low_complexity 1 28 0 1989 190 62 17 chr11 103348275 103348463 -47435090 - MER89 LTR ERV1 0 559 381 2088 151 72 43 chr11 103348463 103348879 -47434674 - MSTA LTR MaLR 0 428 1 1989 190 62 17 chr11 103348879 103349164 -47434389 - MER89 LTR ERV1 -178 381 1 2563 72 3 0 chr11 103349592 103349898 -47433655 - AluSp SINE Alu -6 307 1 498 126 1 0 chr11 103350123 103350207 -47433346 - L1PB1 LINE L1 -145 6006 5922 1095 162 6 0 chr11 103351463 103351630 -47431923 - AluJb SINE Alu -13 299 132 719 208 35 24 chr11 103351748 103351968 -47431585 + MER89 LTR ERV1 18 272 -287 359 169 169 0 chr11 103351972 103352055 -47431498 + MER89 LTR ERV1 1 97 -462 1998 161 31 36 chr11 103352097 103352325 -47431228 + MER89 LTR ERV1 178 405 -154 2272 104 0 7 chr11 103352325 103352624 -47430929 - AluSg SINE Alu -13 297 1 1998 161 31 36 chr11 103352624 103352779 -47430774 + MER89 LTR ERV1 405 559 0 601 219 138 57 chr11 103352914 103353248 -47430305 + HAL1 LINE L1 800 1160 -1347 631 148 10 0 chr11 103353550 103353651 -47429902 - LTR44 LTR ERV1 -23 496 395 843 114 130 82 chr11 103353662 103353846 -47429707 - LTR44 LTR ERV1 -324 195 3 281 289 0 21 chr11 103354093 103354190 -47429363 + MIR SINE MIR 166 260 -2 698 247 108 69 chr11 103356062 103356588 -47426965 + L1MC/D LINE L1 1281 1785 -4755 2131 107 0 20 chr11 103356588 103356888 -47426665 - AluSc SINE Alu -13 296 3 1674 188 7 7 chr11 103356891 103357184 -47426369 - AluJo SINE Alu -17 295 3 1814 184 3 0 chr11 103357190 103357483 -47426070 - AluJo SINE Alu -18 294 1 698 247 108 69 chr11 103357483 103357528 -47426025 + L1MC/D LINE L1 1790 1886 -4654 1458 261 63 14 chr11 103357594 103358099 -47425454 + L1MC/D LINE L1 4178 4707 -1833 3083 177 12 3 chr11 103359550 103360250 -47423303 + L1MC/D LINE L1 5491 6195 -743 2763 71 124 0 chr11 103360251 103360645 -47422908 + LTR7 LTR ERV1 1 443 -7 19799 99 25 22 chr11 103360652 103363628 -47419925 + HERVH LTR ERV1 1 2987 -4726 6189 85 7 2 chr11 103363622 103364472 -47419081 + HERVH LTR ERV1 3140 3993 -3720 * 4327 118 2 2 chr11 103364474 103365082 -47418471 + HERVH LTR ERV1 4488 5095 -2618 1456 62 0 9 chr11 103365247 103365459 -47418094 - L1M4 LINE L1 -606 5578 5376 662 321 30 33 chr11 103365477 103365844 -47417709 - L1ME LINE L1 -5291 779 414 3228 127 47 0 chr11 103366042 103366531 -47417022 + MER41E LTR ERV1 1 512 0 2310 61 3 17 chr11 103366563 103366858 -47416695 + AluY SINE Alu 2 292 -19 441 0 0 0 chr11 103366901 103366950 -47416603 + (CA)n Simple_repeat Simple_repeat 1 49 0 358 271 14 21 chr11 103367124 103367264 -47416289 - L1ME LINE L1 -5902 168 30 284 318 13 39 chr11 103367313 103367467 -47416086 - L1ME LINE L1 -5601 469 320 349 282 0 17 chr11 103367609 103367726 -47415827 - L1ME LINE L1 -5907 163 49 798 251 58 62 chr11 103367796 103368310 -47415243 - L1ME LINE L1 -5237 833 322 2594 63 0 0 chr11 103368350 103368652 -47414901 - AluY SINE Alu -9 302 1 3494 173 7 7 chr11 103368664 103369258 -47414295 - MLT1A1-int LTR MaLR -1141 594 1 1547 228 80 3 chr11 103369258 103369596 -47413957 - MLT1A1 LTR MaLR 0 365 2 231 316 0 13 chr11 103370371 103370450 -47413103 - MIR SINE MIR -58 204 127 2237 89 0 4 chr11 103370545 103370855 -47412698 - AluY SINE Alu 0 309 1 287 156 44 0 chr11 103370996 103371041 -47412512 + MER96 DNA MER1_type? 38 84 -91 1245 48 0 0 chr11 103371057 103371248 -47412305 + L1PA7 LINE L1 5985 6175 0 229 179 0 0 chr11 103371734 103371773 -47411780 - Charlie2 DNA MER1_type 0 2862 2824 193 226 95 24 chr11 103371825 103371909 -47411644 + MIR SINE MIR 134 223 -39 531 240 217 14 chr11 103371980 103372197 -47411356 - MIR SINE MIR 0 262 2 1300 208 33 107 chr11 103373450 103373812 -47409741 + MLT1B LTR MaLR 1 333 -57 1449 113 85 0 chr11 103373812 103374024 -47409529 + MER30 DNA MER1_type 1 230 0 1300 208 33 107 chr11 103374024 103374055 -47409498 + MLT1B LTR MaLR 333 365 -25 4733 148 40 33 chr11 103374246 103375136 -47408417 - L1MC1 LINE L1 0 6333 5437 2064 108 19 38 chr11 103375138 103375452 -47408101 - AluSc SINE Alu -1 308 1 2626 88 8 0 chr11 103376376 103376730 -47406823 + L1PA11 LINE L1 5810 6166 -8 2692 25 6 16 chr11 103376730 103377044 -47406509 + AluY SINE Alu 1 311 0 2707 63 29 0 chr11 103377170 103377519 -47406034 - HERVH LTR ERV1 -5978 1735 1377 2717 89 109 0 chr11 103377521 103377925 -47405628 - LTR7 LTR ERV1 -2 448 1 2298 106 56 13 chr11 103377925 103378301 -47405252 - HERVH LTR ERV1 0 7713 7322 1419 124 18 9 chr11 103378299 103378517 -47405036 - HERVH LTR ERV1 -1894 5819 5600 * 4416 143 0 1 chr11 103378518 103379181 -47404372 - HERVH LTR ERV1 -2564 5149 4488 3346 118 8 6 chr11 103379183 103379684 -47403869 - HERVH LTR ERV1 -3720 3993 3492 897 142 20 0 chr11 103379674 103379822 -47403731 - HERVH LTR ERV1 -4423 3290 3140 * 8106 106 3 6 chr11 103379816 103380974 -47402579 - HERVH LTR ERV1 -4726 2987 1834 1972 192 62 17 chr11 103381507 103381792 -47401761 + MER89 LTR ERV1 1 272 -287 2088 151 72 43 chr11 103381792 103382208 -47401345 + MSTA LTR MaLR 1 428 0 1972 192 62 17 chr11 103382208 103382396 -47401157 + MER89 LTR ERV1 272 559 0 21 36 0 0 chr11 103383114 103383142 -47400411 + AT_rich Low_complexity Low_complexity 1 28 0 1111 296 69 24 chr11 103383339 103383802 -47399751 + L2 LINE L2 2830 3313 0 18039 33 10 0 chr11 103383943 103386488 -47397065 + L1P2 LINE L1 3213 5782 -373 43333 39 26 0 chr11 103386488 103392121 -47391432 + L1P2 LINE L1 1 5782 -373 9074 70 113 0 chr11 103392121 103393379 -47390174 + L1P LINE L1 1 1400 -4746 240 35 0 0 chr11 103393963 103393992 -47389561 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 288 294 183 6 chr11 103394777 103394957 -47388596 + L2 LINE L2 2485 2696 -618 2648 127 83 11 chr11 103394970 103395441 -47388112 - L1PB4 LINE L1 0 6156 5652 24 32 0 0 chr11 103395539 103395570 -47387983 + AT_rich Low_complexity Low_complexity 1 31 0 181 339 0 0 chr11 103395725 103395784 -47387769 + L2 LINE L2 2687 2745 -569 1170 129 121 31 chr11 103395987 103396243 -47387310 - Tigger3b DNA MER2_type -691 540 262 32349 66 13 9 chr11 103396243 103402348 -47381205 + L1PA5 LINE L1 2 6133 -21 1812 148 46 3 chr11 103402348 103402652 -47380901 - Tigger3b DNA MER2_type -914 317 1 468 253 167 23 chr11 103402685 103402859 -47380694 - MIR SINE MIR 0 262 64 24 53 0 0 chr11 103402859 103402897 -47380656 + AT_rich Low_complexity Low_complexity 1 38 0 312 185 104 67 chr11 103403963 103404098 -47379455 - L1MC/D LINE L1 -2325 5483 5344 25 0 0 0 chr11 103404119 103404144 -47379409 + AT_rich Low_complexity Low_complexity 1 25 0 269 281 12 70 chr11 103404197 103404240 -47379313 - L1MC/D LINE L1 -947 5199 5155 2351 88 3 7 chr11 103404240 103404545 -47379008 - AluSc SINE Alu -5 304 1 269 281 12 70 chr11 103404545 103404672 -47378881 - L1MC/D LINE L1 -991 5155 5039 608 329 81 10 chr11 103404760 103405067 -47378486 + L2 LINE L2 1043 1371 -1943 937 216 48 9 chr11 103405067 103405294 -47378259 - L1MB2 LINE L1 -1 6170 5935 4690 164 32 4 chr11 103405305 103406121 -47377432 - L1MA6 LINE L1 0 6300 5462 936 27 0 0 chr11 103406221 103406333 -47377220 + HERVH LTR ERV1 3882 3993 -3720 4488 134 1 3 chr11 103406335 103406998 -47376555 + HERVH LTR ERV1 4488 5149 -2564 1396 134 19 0 chr11 103406999 103407215 -47376338 + HERVH LTR ERV1 5600 5819 -1894 * 2478 90 48 13 chr11 103407213 103407592 -47375961 + HERVH LTR ERV1 7322 7713 0 2874 81 131 0 chr11 103407592 103407988 -47375565 + LTR7 LTR ERV1 1 448 -2 6132 157 67 45 chr11 103407990 103409270 -47374283 + L1MC3 LINE L1 5798 7105 -680 386 177 25 13 chr11 103409271 103409350 -47374203 + MLT1F1 LTR MaLR 45 124 -443 2161 214 37 69 chr11 103409386 103409951 -47373602 + MLT2B3 LTR ERVL 1 547 -7 2698 165 41 67 chr11 103409956 103410539 -47373014 + L1MC3 LINE L1 7217 7784 -1 298 229 28 64 chr11 103410727 103410836 -47372717 + L1MEd LINE L1 652 756 -5363 800 144 7 22 chr11 103411049 103411188 -47372365 + AluJo SINE Alu 1 137 -175 39200 80 5 22 chr11 103411196 103417442 -47366111 + L1PA5 LINE L1 11 6147 -7 947 175 52 0 chr11 103417546 103417740 -47365813 + L1MA9 LINE L1 6108 6311 -1 339 323 30 6 chr11 103417812 103417976 -47365577 + HAL1 LINE L1 1508 1675 -832 304 302 55 84 chr11 103418288 103418490 -47365063 + LTR67 LTR ERVL 360 555 -2 671 331 122 3 chr11 103418679 103419014 -47364539 + ERVL LTR ERVL 2068 2442 -3322 1167 282 74 42 chr11 103419014 103419099 -47364454 + HAL1 LINE L1 1464 1545 -962 1798 216 31 51 chr11 103419099 103419612 -47363941 + MLT1D LTR MaLR 3 505 0 1167 282 74 42 chr11 103419612 103420029 -47363524 + HAL1 LINE L1 1545 1982 -525 2452 148 44 7 chr11 103421041 103421452 -47362101 + MSTB1 LTR MaLR 7 432 0 186 227 0 45 chr11 103421579 103421623 -47361930 - L3 LINE CR1 -20 1557 1516 44283 44 2 1 chr11 103421737 103427880 -47355673 + L1PA4 LINE L1 6 6155 0 414 276 97 21 chr11 103427945 103428090 -47355463 + MIR SINE MIR 78 233 -29 230 320 26 0 chr11 103428528 103428606 -47354947 + MIR3 SINE MIR 100 179 -29 2333 138 31 6 chr11 103428893 103429248 -47354305 + MER47A DNA MER2_type 3 366 0 2538 71 0 0 chr11 103430449 103430758 -47352795 + AluY SINE Alu 1 309 -2 402 346 34 68 chr11 103432220 103432425 -47351128 + L2 LINE L2 3075 3272 0 206 347 99 16 chr11 103432462 103432583 -47350970 - MIR3 SINE MIR -27 181 51 204 135 0 0 chr11 103432909 103432946 -47350607 + (TG)n Simple_repeat Simple_repeat 1 37 0 616 261 67 41 chr11 103433151 103433419 -47350134 + LTR16A1 LTR ERVL 183 457 0 2256 91 34 0 chr11 103433427 103433724 -47349829 + AluSp SINE Alu 1 307 -6 180 0 0 0 chr11 103433833 103433853 -47349700 + (T)n Simple_repeat Simple_repeat 1 20 0 635 148 10 0 chr11 103433853 103433954 -47349599 + LTR44 LTR ERV1 395 496 -23 622 228 129 48 chr11 103434256 103434590 -47348963 - HAL1 LINE L1 -1347 1160 800 1994 161 31 36 chr11 103434725 103434880 -47348673 - MER89 LTR ERV1 0 559 405 2166 110 0 10 chr11 103434880 103435180 -47348373 + AluSg SINE Alu 1 297 -13 1994 161 31 36 chr11 103435180 103435408 -47348145 - MER89 LTR ERV1 -154 405 178 359 169 169 0 chr11 103435450 103435533 -47348020 - MER89 LTR ERV1 -462 97 1 720 208 35 24 chr11 103435537 103435757 -47347796 - MER89 LTR ERV1 -287 272 18 1085 162 6 0 chr11 103435875 103436042 -47347511 + AluJb SINE Alu 132 299 -13 497 126 1 0 chr11 103437299 103437383 -47346170 + L1PB1 LINE L1 5922 6006 -145 2543 72 3 0 chr11 103437608 103437914 -47345639 + AluSp SINE Alu 1 307 -6 1978 190 62 17 chr11 103438342 103438627 -47344926 + MER89 LTR ERV1 1 272 -287 2225 151 72 43 chr11 103438627 103439043 -47344510 + MSTA LTR MaLR 1 428 0 1978 190 62 17 chr11 103439043 103439231 -47344322 + MER89 LTR ERV1 272 559 0 187 382 0 0 chr11 103439232 103439300 -47344253 - L2 LINE L2 -66 3206 3139 21 36 0 0 chr11 103439949 103439977 -47343576 + AT_rich Low_complexity Low_complexity 1 28 0 1248 296 69 24 chr11 103440174 103440637 -47342916 + L2 LINE L2 2830 3313 0 18950 31 2 2 chr11 103440778 103443703 -47339850 + L1PA4 LINE L1 3213 6155 0 10642 93 7 1 chr11 103443693 103445844 -47337709 + L1PA7 LINE L1 3991 6149 -5 * 2150 132 0 3 chr11 103445912 103446207 -47337346 + AluSx SINE Alu 1 294 -18 357 325 41 0 chr11 103446220 103446343 -47337210 - L2 LINE L2 0 3272 3145 839 144 0 36 chr11 103447048 103447187 -47336366 + AluJo SINE Alu 1 134 -178 727 314 49 29 chr11 103448451 103448801 -47334752 - L3 LINE CR1 -1 1576 1220 338 312 24 32 chr11 103448805 103448930 -47334623 + MIR SINE MIR 2 125 -137 2343 92 0 0 chr11 103449307 103449599 -47333954 + AluSq SINE Alu 1 292 -21 438 291 11 44 chr11 103450163 103450345 -47333208 + MIR SINE MIR 59 234 -28 589 229 90 12 chr11 103450908 103451074 -47332479 + MIR SINE MIR 66 244 -18 345 331 90 32 chr11 103451378 103451918 -47331635 + L2 LINE L2 2480 3054 -218 511 247 2 1 chr11 103452804 103452919 -47330634 + MIR SINE MIR 37 151 -61 303 122 0 0 chr11 103453774 103453823 -47329730 + (GGAGA)n Simple_repeat Simple_repeat 3 51 0 372 289 21 30 chr11 103453945 103454198 -47329355 + GA-rich Low_complexity Low_complexity 1 250 0 41460 53 32 0 chr11 103454497 103460134 -47323419 - L1P2 LINE L1 -335 5819 2 11701 99 6 8 chr11 103460133 103461310 -47322243 - L1P LINE L1 -2134 4012 2837 * 2209 77 57 14 chr11 103461310 103461607 -47321946 - AluY SINE Alu -1 310 1 11701 99 6 8 chr11 103461607 103462141 -47321412 - L1P LINE L1 -3309 2837 2304 10052 203 19 16 chr11 103462253 103462351 -47321202 - L1 LINE L1 -1638 4508 4412 276 30 0 0 chr11 103462351 103462384 -47321169 + (TG)n Simple_repeat Simple_repeat 1 33 0 10052 203 19 16 chr11 103462384 103464557 -47318996 - L1 LINE L1 -1734 4412 2232 2443 188 65 67 chr11 103464693 103465044 -47318509 + L1 LINE L1 3661 4011 -2135 1408 212 14 18 chr11 103465044 103465327 -47318226 + AluJo SINE Alu 1 282 -30 2443 188 65 67 chr11 103465327 103465688 -47317865 + L1 LINE L1 4011 4371 -1775 294 0 0 0 chr11 103465687 103465720 -47317833 - L1P LINE L1 -747 5408 5376 * 682 322 34 30 chr11 103465695 103466105 -47317448 - L1ME LINE L1 -5278 779 414 3409 127 47 0 chr11 103466303 103466792 -47316761 + MER41E LTR ERV1 1 512 0 2355 51 3 17 chr11 103466824 103467120 -47316433 + AluY SINE Alu 2 293 -18 1356 262 56 37 chr11 103467483 103467914 -47315639 - LTR16C LTR ERVL 0 491 53 2227 60 0 57 chr11 103468096 103468397 -47315156 - AluY SINE Alu -27 284 1 537 211 0 0 chr11 103468787 103468877 -47314676 - Tigger7 DNA MER2_type 0 2487 2398 2253 168 22 10 chr11 103468879 103469296 -47314257 - Tigger7 DNA MER2_type -213 520 1 203 276 87 102 chr11 103469932 103470381 -47313172 + L2 LINE L2 2150 3065 -207 183 368 72 16 chr11 103470458 103470583 -47312970 + L2 LINE L2 3090 3221 -51 6069 162 82 14 chr11 103470721 103472486 -47311067 - L1PB1 LINE L1 -1 6150 4253 6307 206 16 4 chr11 103472501 103473853 -47309700 + L1PB1 LINE L1 2857 4224 -1922 1633 45 65 0 chr11 103473974 103474173 -47309380 - L1PA6 LINE L1 -2 6152 5941 337 285 179 0 chr11 103474795 103474974 -47308579 - MIR SINE MIR -15 247 37 661 233 33 37 chr11 103475058 103475283 -47308270 + L1ME4a LINE L1 5474 5692 -429 271 188 8 128 chr11 103475292 103475425 -47308128 + L1MC5 LINE L1 7688 7804 -157 279 204 143 68 chr11 103475530 103475677 -47307876 + L1ME4a LINE L1 5769 5926 -195 336 292 83 8 chr11 103476110 103476230 -47307323 - L2 LINE L2 -6 3266 3138 1798 134 0 51 chr11 103476384 103476697 -47306856 + AluSx SINE Alu 3 299 -13 1869 238 102 65 chr11 103477630 103478677 -47304876 + L1MC4a LINE L1 5134 5384 -762 354 214 155 122 chr11 103478645 103478981 -47304572 + L1MC4 LINE L1 7688 8034 -8 * 2155 106 0 0 chr11 103479807 103480089 -47303464 - AluSx SINE Alu -28 284 3 1080 103 0 75 chr11 103480542 103480716 -47302837 + AluY SINE Alu 1 161 -150 1518 50 50 40 chr11 103481992 103482270 -47301283 + AluY SINE Alu 1 281 -30 2282 85 3 7 chr11 103482373 103482668 -47300885 - AluSq SINE Alu -19 294 1 324 0 0 0 chr11 103484850 103484886 -47298667 + (GA)n Simple_repeat Simple_repeat 1 36 0 2495 48 0 7 chr11 103486141 103486436 -47297117 + AluY SINE Alu 1 293 -18 1842 151 66 3 chr11 103487132 103487450 -47296103 + L1MB2 LINE L1 5832 6169 -2 22 0 0 0 chr11 103487450 103487472 -47296081 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr11 103487884 103487904 -47295649 + (CAT)n Simple_repeat Simple_repeat 2 21 0 2230 99 3 0 chr11 103488108 103488402 -47295151 - AluSp SINE Alu -18 295 1 21 0 0 0 chr11 103488408 103488429 -47295124 + AT_rich Low_complexity Low_complexity 1 21 0 1029 329 29 44 chr11 103488441 103489059 -47294494 + L1PA16 LINE L1 788 1396 -6178 284 313 21 0 chr11 103489189 103489285 -47294268 + L1PA16 LINE L1 2084 2181 -5400 15079 205 27 22 chr11 103489520 103493973 -47289580 + L1PA16 LINE L1 2182 6665 -939 2263 102 7 3 chr11 103493973 103494276 -47289277 + AluSq SINE Alu 1 304 -9 15079 205 27 22 chr11 103494276 103495221 -47288332 + L1PA16 LINE L1 6665 7604 0 35 54 0 0 chr11 103495245 103495301 -47288252 + AT_rich Low_complexity Low_complexity 1 56 0 192 40 0 0 chr11 103495385 103495410 -47288143 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 973 179 144 5 chr11 103495531 103495732 -47287821 + MIR SINE MIR 19 247 -15 1959 86 69 31 chr11 103495868 103496159 -47287394 - AluSc SINE Alu -7 302 1 561 210 26 60 chr11 103496241 103496446 -47287107 + MER58 DNA MER1_type 19 2420 0 736 213 95 54 chr11 103496985 103497206 -47286347 + MIR SINE MIR 29 258 -4 391 205 26 0 chr11 103497484 103497562 -47285991 + MLT1K LTR MaLR 509 588 0 1074 307 79 55 chr11 103497805 103497918 -47285635 + L2 LINE L2 2154 2263 -1051 2397 39 7 0 chr11 103497918 103498238 -47285315 + AluY SINE Alu 1 322 0 1074 307 79 55 chr11 103498238 103498846 -47284707 + L2 LINE L2 2263 2893 -421 1934 155 95 12 chr11 103498882 103499218 -47284335 + THE1B LTR MaLR 1 364 0 248 313 81 0 chr11 103499220 103499319 -47284234 + L2 LINE L2 2955 3061 -252 254 276 149 35 chr11 103499545 103499632 -47283921 + L2 LINE L2 3188 3284 -29 425 236 108 74 chr11 103499688 103499836 -47283717 + MER106B DNA MER1_type 3 155 -904 181 265 0 20 chr11 103500196 103500245 -47283308 + L2 LINE L2 3173 3220 -93 1938 170 0 3 chr11 103500664 103500975 -47282578 + AluSx SINE Alu 1 310 -2 362 321 144 11 chr11 103501689 103501876 -47281677 - L3 LINE CR1 -754 823 612 689 171 0 0 chr11 103501890 103501995 -47281558 + MER20 DNA MER1_type 115 219 0 198 311 0 0 chr11 103502428 103502473 -47281080 + MIR3 SINE MIR 157 201 -7 2221 84 3 11 chr11 103503231 103503548 -47280005 + AluSq SINE Alu 1 315 0 393 271 171 0 chr11 103504088 103504217 -47279336 + MIR SINE MIR 1 151 -111 221 313 114 0 chr11 103504887 103505018 -47278535 - MIR SINE MIR 0 262 117 642 289 24 32 chr11 103505039 103505288 -47278265 - MIR SINE MIR -12 250 4 301 356 68 0 chr11 103505306 103505424 -47278129 - L2 LINE L2 0 3272 3147 227 308 51 0 chr11 103505432 103505510 -47278043 - MIR SINE MIR -179 83 2 21 0 0 0 chr11 103505815 103505836 -47277717 + AT_rich Low_complexity Low_complexity 1 21 0 3415 152 50 5 chr11 103506110 103506695 -47276858 + LTR36 LTR ERV1 1 611 0 386 304 67 0 chr11 103506712 103506847 -47276706 + L1MEd LINE L1 781 924 -5448 2126 132 0 3 chr11 103507083 103507387 -47276166 + AluSx SINE Alu 1 303 -9 389 294 78 32 chr11 103507542 103507822 -47275731 + L1MEd LINE L1 1265 1446 -4834 219 290 11 21 chr11 103507951 103508044 -47275509 + (CAAGA)n Simple_repeat Simple_repeat 2 93 0 282 302 160 6 chr11 103508182 103508351 -47275202 - MIR SINE MIR -20 242 48 464 314 29 23 chr11 103508788 103508963 -47274590 + MIR SINE MIR 7 182 -80 483 285 168 54 chr11 103509396 103509439 -47274114 - L3 LINE CR1 -358 1219 1182 1752 131 55 7 chr11 103509439 103509729 -47273824 - AluSx SINE Alu -8 304 1 483 285 168 54 chr11 103509729 103509872 -47273681 - L3 LINE CR1 -395 1182 1057 1288 67 101 0 chr11 103509872 103509906 -47273647 - MER107 DNA MER1_type 0 197 168 191 86 0 29 chr11 103509906 103509941 -47273612 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1288 67 101 0 chr11 103509941 103510085 -47273468 - MER107 DNA MER1_type -29 168 1 483 285 168 54 chr11 103510085 103510307 -47273246 - L3 LINE CR1 -520 1057 763 43 20 0 0 chr11 103510327 103510377 -47273176 + AT_rich Low_complexity Low_complexity 1 50 0 2088 114 0 0 chr11 103510824 103511128 -47272425 - AluSc SINE Alu 0 304 1 2149 108 6 25 chr11 103511646 103511961 -47271592 + AluSq SINE Alu 1 309 -4 21 36 0 0 chr11 103512091 103512119 -47271434 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr11 103512599 103512628 -47270925 + AT_rich Low_complexity Low_complexity 1 29 0 1971 107 10 36 chr11 103513072 103513381 -47270172 + AluJo SINE Alu 6 306 -6 210 278 28 28 chr11 103513509 103513581 -47269972 - MIR3 SINE MIR -3 205 134 311 215 111 44 chr11 103513637 103513772 -47269781 + L1ME4a LINE L1 5977 6120 -1 1630 134 12 113 chr11 103513816 103514151 -47269402 + AluJo SINE Alu 1 301 -11 402 120 13 0 chr11 103514268 103514343 -47269210 + Alu SINE Alu 235 310 -2 2389 251 52 16 chr11 103514892 103515123 -47268430 - MER82 DNA MER2_type 0 653 432 2011 157 15 6 chr11 103515123 103515466 -47268087 - MER7A DNA MER2_type -1 345 2 2389 251 52 16 chr11 103515466 103515864 -47267689 - MER82 DNA MER2_type -221 432 1 25 0 0 0 chr11 103516086 103516111 -47267442 + AT_rich Low_complexity Low_complexity 1 25 0 329 302 47 8 chr11 103516130 103516259 -47267294 + L1ME3A LINE L1 2880 3013 -3133 752 184 61 27 chr11 103516536 103516683 -47266870 + AluJo SINE Alu 4 155 -157 398 309 93 40 chr11 103516767 103517088 -47266465 + L1ME3A LINE L1 3395 3731 -2415 2175 100 31 0 chr11 103517443 103517732 -47265821 + AluSx SINE Alu 1 298 -14 2277 248 78 65 chr11 103517735 103518249 -47265304 + L1ME3A LINE L1 4657 5163 -1007 1491 139 104 15 chr11 103518249 103518508 -47265045 + AluJo SINE Alu 1 282 -30 2277 248 78 65 chr11 103518508 103519490 -47264063 + L1ME3A LINE L1 5163 6161 -9 1618 165 17 14 chr11 103519611 103519908 -47263645 + AluJo SINE Alu 6 303 -9 763 137 101 0 chr11 103520156 103520295 -47263258 - L1PA15 LINE L1 0 6165 6013 6502 136 39 28 chr11 103520378 103521573 -47261980 - Tigger3b DNA MER2_type 0 1231 23 392 239 43 49 chr11 103522218 103522287 -47261266 - L1MA10 LINE L1 -2 6332 6264 566 233 60 7 chr11 103522287 103522437 -47261116 - L1ME1 LINE L1 -63 6103 5946 897 172 89 5 chr11 103522441 103522644 -47260909 - L1M4 LINE L1 -1192 4954 4735 189 0 0 0 chr11 103522644 103522665 -47260888 + (T)n Simple_repeat Simple_repeat 1 21 0 752 184 61 27 chr11 103522876 103523023 -47260530 + AluJo SINE Alu 4 155 -157 391 306 79 42 chr11 103523165 103523430 -47260123 + L1MC/D LINE L1 3457 3731 -2415 2171 108 30 0 chr11 103523785 103524082 -47259471 + AluSx SINE Alu 1 306 -6 447 336 34 17 chr11 103524103 103524398 -47259155 + L1MC/D LINE L1 5315 5614 -2194 4708 159 35 11 chr11 103524676 103525655 -47257898 - L1MB4 LINE L1 0 6180 5178 506 212 15 38 chr11 103525743 103525875 -47257678 + MER58C DNA MER1_type 64 192 -23 2057 138 7 0 chr11 103525935 103526233 -47257320 - AluJb SINE Alu -12 300 1 21 36 0 0 chr11 103526992 103527020 -47256533 + AT_rich Low_complexity Low_complexity 1 28 0 908 206 0 12 chr11 103527755 103527920 -47255633 - FRAM SINE Alu -1 165 3 445 296 9 0 chr11 103528794 103528909 -47254644 - L2 LINE L2 -4 3309 3194 1449 210 174 12 chr11 103528943 103529367 -47254186 - L2 LINE L2 -1189 2125 1633 741 250 47 24 chr11 103529484 103529696 -47253857 - MIR SINE MIR -17 245 29 261 83 0 0 chr11 103529713 103529749 -47253804 + (TC)n Simple_repeat Simple_repeat 2 37 0 243 0 0 0 chr11 103529749 103529776 -47253777 + (CA)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr11 103530044 103530066 -47253487 + AT_rich Low_complexity Low_complexity 1 22 0 667 256 184 35 chr11 103530100 103530557 -47252996 - L1ME4a LINE L1 -68 6053 5529 447 265 65 18 chr11 103530608 103530891 -47252662 - L1ME4a LINE L1 -747 5399 5124 281 270 164 66 chr11 103531065 103531217 -47252336 - MIR SINE MIR -18 244 78 1935 192 72 29 chr11 103531712 103532196 -47251357 + MLT1D LTR MaLR 1 505 0 232 135 39 0 chr11 103532481 103532533 -47251020 + Charlie1 DNA MER1_type 1567 1620 -1141 760 232 32 16 chr11 103533121 103533311 -47250242 + Charlie1a DNA MER1_type 2 194 -1261 11028 49 0 1 chr11 103533313 103533658 -47249895 + L1PA5 LINE L1 3970 4314 -1840 2296 86 3 3 chr11 103533658 103533961 -47249592 + AluY SINE Alu 3 305 -6 11028 49 0 1 chr11 103533961 103535806 -47247747 + L1PA5 LINE L1 4314 6153 -1 192 40 0 0 chr11 103536438 103536463 -47247090 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 255 288 129 50 chr11 103536867 103537006 -47246547 + L2 LINE L2 3123 3272 0 22 35 0 0 chr11 103537359 103537388 -47246165 + AT_rich Low_complexity Low_complexity 1 29 0 1270 76 5 11 chr11 103537391 103537575 -47245978 + AluY SINE Alu 125 307 -4 391 244 110 8 chr11 103537598 103537725 -47245828 + MIR SINE MIR 11 150 -112 517 225 149 35 chr11 103537731 103537934 -47245619 - MLT1F1 LTR MaLR -7 647 303 2201 119 0 10 chr11 103537934 103538246 -47245307 - AluSx SINE Alu -3 309 1 414 325 71 71 chr11 103538348 103538687 -47244866 - L2 LINE L2 -6 3266 2928 418 333 89 16 chr11 103538734 103538992 -47244561 - L2 LINE L2 -495 2819 2543 522 104 0 0 chr11 103539052 103539129 -47244424 + MADE1 DNA Mariner 4 80 0 321 229 107 18 chr11 103539132 103539240 -47244313 - MIR SINE MIR -81 127 11 397 279 221 13 chr11 103539247 103539401 -47244152 - MER5A DNA MER1_type 0 189 4 286 327 67 0 chr11 103540018 103540122 -47243431 - L2 LINE L2 -375 2939 2829 348 294 176 0 chr11 103541049 103541168 -47242385 - L3 LINE CR1 -147 1430 1291 497 203 73 0 chr11 103541240 103541363 -47242190 + MER3 DNA MER1_type 8 139 -70 281 333 175 0 chr11 103541541 103541667 -47241886 - L2 LINE L2 -8 3264 3117 1053 228 5 14 chr11 103541836 103542055 -47241498 + MER20 DNA MER1_type 1 217 -2 297 165 0 184 chr11 103542059 103542162 -47241391 + MLT1K LTR MaLR 134 217 -371 202 250 0 0 chr11 103543576 103543620 -47239933 + (TA)n Simple_repeat Simple_repeat 1 44 0 220 326 78 23 chr11 103544460 103544589 -47238964 - L2 LINE L2 -1 3271 3136 574 281 124 81 chr11 103545067 103545195 -47238358 - L2 LINE L2 -1 3312 3191 1559 115 187 7 chr11 103545195 103545500 -47238053 + MER46B DNA MER2_type 1 235 -1 574 281 124 81 chr11 103545500 103545813 -47237740 - L2 LINE L2 -122 3191 2852 3151 190 79 111 chr11 103546219 103546835 -47236718 + L1MC4a LINE L1 6204 6805 -1003 304 77 0 0 chr11 103546835 103546874 -47236679 + MADE1 DNA Mariner 1 39 -41 3151 190 79 111 chr11 103546874 103547387 -47236166 + L1MC4a LINE L1 6805 7333 -475 1220 172 152 20 chr11 103547757 103548060 -47235493 - MER2 DNA MER2_type -1 343 1 268 252 133 0 chr11 103548300 103548405 -47235148 + L1ME LINE L1 5645 5761 -401 810 167 17 108 chr11 103549134 103549189 -47234364 + Looper DNA T2_type 1231 1289 -269 937 118 0 22 chr11 103549189 103549324 -47234229 - FLAM_C SINE Alu 0 133 2 204 40 0 0 chr11 103549334 103549359 -47234194 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 1865 146 4 0 chr11 103549365 103549639 -47233914 - AluSx SINE Alu -37 275 1 810 167 17 108 chr11 103549639 103549805 -47233748 + Looper DNA T2_type 1303 1448 -110 557 309 236 28 chr11 103550215 103550824 -47232729 - L2 LINE L2 -2515 799 64 848 280 55 44 chr11 103552912 103553387 -47230166 - L1MC4a LINE L1 -1867 5941 5462 541 316 29 12 chr11 103553387 103553558 -47229995 - MER5B DNA MER1_type -2 176 3 329 236 114 64 chr11 103553565 103553648 -47229905 - L1MC4a LINE L1 -2342 5466 5372 2275 110 0 0 chr11 103553648 103553947 -47229606 + AluSx SINE Alu 1 299 -13 329 236 114 64 chr11 103553947 103554003 -47229550 - L1MC4a LINE L1 -2436 5372 5320 390 274 83 44 chr11 103554224 103554476 -47229077 - L1MC4a LINE L1 -1199 4947 4686 312 299 121 35 chr11 103554601 103554775 -47228778 + L1M4c LINE L1 1284 1472 -4912 618 306 74 5 chr11 103554791 103555007 -47228546 - MIR SINE MIR -29 233 3 2020 134 6 19 chr11 103555273 103555586 -47227967 + AluSx SINE Alu 1 309 -3 337 187 22 33 chr11 103555682 103555773 -47227780 + HAL1 LINE L1 1585 1674 -833 1673 138 30 40 chr11 103555815 103555963 -47227590 + AluJo SINE Alu 1 149 -173 2285 109 22 33 chr11 103555963 103556331 -47227222 + THE1B LTR MaLR 1 364 0 1673 138 30 40 chr11 103556331 103556507 -47227046 + AluJo SINE Alu 149 322 0 3143 165 184 77 chr11 103556525 103557116 -47226437 + L1MD3 LINE L1 6636 7162 -833 315 237 0 13 chr11 103557116 103557192 -47226361 + MLT1F1 LTR MaLR 51 125 -442 3143 165 184 77 chr11 103557192 103557533 -47226020 + L1MD3 LINE L1 7162 7751 -244 1879 97 3 123 chr11 103557554 103557894 -47225659 + AluSx SINE Alu 1 299 -13 928 158 0 0 chr11 103558232 103558365 -47225188 - AluSg/x SINE Alu -15 297 165 218 292 146 0 chr11 103559051 103559140 -47224413 - L2 LINE L2 -1 3312 3211 301 355 45 9 chr11 103559140 103559250 -47224303 - L2 LINE L2 -21 3292 3179 792 140 60 7 chr11 103559738 103559888 -47223665 + L1MB2 LINE L1 5995 6152 -19 1373 188 31 166 chr11 103559957 103560501 -47223052 + L1MC4 LINE L1 7430 7995 0 1677 106 8 0 chr11 103560901 103561147 -47222406 + L1P4 LINE L1 5468 5715 -446 3995 100 25 2 chr11 103561247 103561835 -47221718 + L1PA13 LINE L1 5549 6150 -13 776 291 216 24 chr11 103561904 103562592 -47220961 - L2 LINE L2 -52 3261 2457 275 265 176 15 chr11 103564470 103564606 -47218947 - MIR SINE MIR -56 206 49 447 260 73 36 chr11 103564829 103565021 -47218532 - MIR SINE MIR -50 212 14 1627 68 5 5 chr11 103565038 103565243 -47218310 - AluSx SINE Alu -74 238 34 196 232 143 0 chr11 103568198 103568254 -47215299 - L2 LINE L2 0 3313 3250 1655 157 10 19 chr11 103568426 103568739 -47214814 - MER2 DNA MER2_type 0 345 36 230 315 74 19 chr11 103568748 103568856 -47214697 - L3b LINE CR1 -180 1403 1290 1933 126 54 0 chr11 103569087 103569381 -47214172 - AluSx SINE Alu -2 310 1 328 250 162 54 chr11 103570528 103570676 -47212877 + MIR SINE MIR 7 170 -92 191 261 136 23 chr11 103571008 103571096 -47212457 + MIR SINE MIR 86 183 -79 219 297 54 0 chr11 103571595 103571669 -47211884 - MIR3 SINE MIR -23 185 108 382 256 99 0 chr11 103572394 103572515 -47211038 + L2 LINE L2 3181 3313 0 371 386 36 9 chr11 103572522 103572742 -47210811 + L3 LINE CR1 1349 1574 -3 23 33 0 0 chr11 103572910 103572940 -47210613 + AT_rich Low_complexity Low_complexity 1 30 0 187 155 121 52 chr11 103573592 103573650 -47209903 + MIR SINE MIR 152 213 -49 311 239 204 0 chr11 103573785 103573927 -47209626 - MIR SINE MIR -6 256 86 288 73 0 0 chr11 103577877 103577918 -47205635 - L1MB1 LINE L1 -223 5945 5905 573 174 214 0 chr11 103577996 103578197 -47205356 - MER33 DNA MER1_type -80 244 1 312 232 136 40 chr11 103578237 103578362 -47205191 + MIR SINE MIR 15 151 -111 351 314 141 0 chr11 103578614 103578770 -47204783 - MIR SINE MIR -2 260 83 2079 137 6 13 chr11 103579217 103579530 -47204023 - AluSx SINE Alu -1 311 1 1073 139 30 122 chr11 103579578 103579881 -47203672 - L1MB1 LINE L1 -10 6179 5905 2021 91 20 30 chr11 103579976 103580272 -47203281 + AluSc SINE Alu 8 300 -9 745 11 0 0 chr11 103580318 103580409 -47203144 + AluYa5/8 SINE Alu 218 308 -3 2282 122 0 0 chr11 103580590 103580893 -47202660 - AluSx SINE Alu -9 303 1 214 235 86 25 chr11 103581143 103581224 -47202329 + MIR SINE MIR 125 210 -52 249 139 0 23 chr11 103581451 103581494 -47202059 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 593 82 96 20 chr11 103581497 103581643 -47201910 + CT-rich Low_complexity Low_complexity 4 160 0 677 276 157 62 chr11 103582428 103582860 -47200693 - L2 LINE L2 -12 3301 2829 342 331 68 23 chr11 103583104 103583237 -47200316 + L2 LINE L2 3175 3313 0 2424 77 3 0 chr11 103583816 103584115 -47199438 + AluY SINE Alu 1 300 -11 873 214 16 5 chr11 103584255 103584442 -47199111 - MER5A DNA MER1_type 0 189 1 2355 85 0 3 chr11 103584869 103585163 -47198390 - AluSg SINE Alu -17 293 1 1848 279 176 29 chr11 103586041 103587198 -47196355 + L2 LINE L2 1813 3170 -143 1058 189 105 47 chr11 103587198 103587542 -47196011 + MER47A DNA MER2_type 1 364 -2 1848 279 176 29 chr11 103587542 103587638 -47195915 + L2 LINE L2 3170 3251 -62 500 254 85 18 chr11 103587630 103587795 -47195758 - MIR SINE MIR -77 185 10 * 330 304 165 55 chr11 103587797 103588208 -47195345 + L2 LINE L2 1893 2365 -949 2276 64 3 7 chr11 103588208 103588514 -47195039 + AluY SINE Alu 1 305 0 330 304 165 55 chr11 103588514 103588575 -47194978 + L2 LINE L2 2365 2418 -896 407 311 20 0 chr11 103588681 103588829 -47194724 + Charlie8 DNA MER1_type 4 154 -2263 257 197 56 56 chr11 103589118 103589189 -47194364 + Charlie8 DNA MER1_type 2342 2412 -5 206 286 0 0 chr11 103590029 103590085 -47193468 + (ATG)n Simple_repeat Simple_repeat 2 57 0 412 292 11 0 chr11 103590101 103590254 -47193299 - MIR SINE MIR -40 222 68 2153 151 0 0 chr11 103590732 103591043 -47192510 + AluSx SINE Alu 1 311 -1 451 262 147 5 chr11 103592609 103592800 -47190753 + L3b LINE CR1 1264 1481 -102 658 281 44 25 chr11 103592972 103593175 -47190378 - MIR SINE MIR -50 212 6 409 167 0 0 chr11 103594955 103595015 -47188538 + AluS SINE Alu 1 60 -250 572 212 0 61 chr11 103595015 103595147 -47188406 - MIR SINE MIR -137 125 2 505 319 82 14 chr11 103595427 103595634 -47187919 - MIR SINE MIR -23 239 19 461 198 75 19 chr11 103596496 103596602 -47186951 + L2 LINE L2 3200 3311 -2 1696 129 4 0 chr11 103597144 103597392 -47186161 + AluSx SINE Alu 27 275 -37 225 0 0 0 chr11 103597398 103597423 -47186130 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 189 0 0 0 chr11 103597487 103597508 -47186045 + (A)n Simple_repeat Simple_repeat 1 21 0 180 0 0 0 chr11 103597646 103597666 -47185887 + (A)n Simple_repeat Simple_repeat 1 20 0 535 183 0 0 chr11 103597735 103597828 -47185725 - MER5A DNA MER1_type -84 105 13 2249 114 0 0 chr11 103598590 103598888 -47184665 + AluSx SINE Alu 1 298 -14 240 222 121 20 chr11 103598949 103599048 -47184505 - L1ME4a LINE L1 -12 6109 6001 235 279 29 64 chr11 103600222 103600362 -47183191 + L1M4 LINE L1 3957 4091 -2055 203 232 0 54 chr11 103600455 103600511 -47183042 + (TCTCTG)n Simple_repeat Simple_repeat 3 55 0 1773 179 0 0 chr11 103600602 103600875 -47182678 - AluJb SINE Alu -39 273 1 2544 40 3 34 chr11 103601008 103601329 -47182224 - AluY SINE Alu 0 311 1 511 244 66 15 chr11 103601442 103601639 -47181914 - L1ME4a LINE L1 -190 5931 5725 1148 159 49 41 chr11 103601924 103602169 -47181384 + L1MB1 LINE L1 5844 6090 -78 248 247 202 0 chr11 103602723 103602812 -47180741 + L2 LINE L2 3202 3308 -5 186 71 0 0 chr11 103603594 103603622 -47179931 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 2465 57 0 3 chr11 103604531 103604832 -47178721 + AluY SINE Alu 1 300 -11 181 255 0 78 chr11 103605240 103605291 -47178262 + L2 LINE L2 3210 3256 -16 369 248 54 8 chr11 103606087 103606216 -47177337 + L1ME3A LINE L1 6031 6165 -5 219 387 13 53 chr11 103606222 103606372 -47177181 - L2 LINE L2 -614 2700 2557 268 337 87 0 chr11 103606531 103606623 -47176930 + L2 LINE L2 3173 3272 0 559 227 109 101 chr11 103606814 103607052 -47176501 - MLT1K LTR MaLR -335 253 14 1815 135 3 29 chr11 103608037 103608348 -47175205 + AluSx SINE Alu 6 308 -4 372 244 110 8 chr11 103608371 103608498 -47175055 + MIR SINE MIR 11 150 -112 1093 227 167 77 chr11 103608504 103608707 -47174846 - MLT1F1 LTR MaLR -7 560 377 2209 103 0 19 chr11 103608707 103609019 -47174534 - AluSc SINE Alu -3 306 1 1093 227 167 77 chr11 103609019 103609333 -47174220 - MLT1F1 LTR MaLR -190 377 1 322 239 76 22 chr11 103610009 103610101 -47173452 + L2 LINE L2 3208 3304 -9 1728 174 14 0 chr11 103610217 103610504 -47173049 - AluJb SINE Alu -21 291 1 216 0 0 0 chr11 103610590 103610614 -47172939 + (T)n Simple_repeat Simple_repeat 1 24 0 2340 92 3 0 chr11 103610740 103611043 -47172510 - AluY SINE Alu -7 304 1 276 149 0 0 chr11 103611728 103611775 -47171778 + (TG)n Simple_repeat Simple_repeat 1 47 0 34 65 0 0 chr11 103612482 103612544 -47171009 + AT_rich Low_complexity Low_complexity 1 62 0 363 269 67 0 chr11 103612662 103612781 -47170772 - MIR3 SINE MIR -6 202 76 194 330 55 33 chr11 103612775 103612866 -47170687 + MIR SINE MIR 61 153 -109 * 263 327 59 0 chr11 103612863 103612964 -47170589 - MIR SINE MIR 0 262 156 246 146 188 0 chr11 103612965 103613013 -47170540 + MER58 DNA MER1_type 2364 2420 0 252 186 274 39 chr11 103613132 103613234 -47170319 - MIR SINE MIR -120 142 17 2163 102 0 3 chr11 103613628 103613922 -47169631 + AluSg SINE Alu 1 293 -17 311 259 129 29 chr11 103614244 103614383 -47169170 - MIR SINE MIR -33 229 77 242 242 55 44 chr11 103614959 103615050 -47168503 + L2 LINE L2 3192 3283 -30 1390 81 0 6 chr11 103619286 103619458 -47164095 - AluSx SINE Alu -141 171 1 4220 145 19 28 chr11 103619463 103620367 -47163186 - L1P4 LINE L1 -687 5481 4577 264 339 9 9 chr11 103621391 103621506 -47162047 + L3b LINE CR1 1145 1259 -324 451 270 68 6 chr11 103621507 103621670 -47161883 - L2 LINE L2 -1 3312 3140 4101 109 5 4 chr11 103621703 103622254 -47161299 + MER41A LTR ERV1 3 554 0 278 232 128 40 chr11 103622419 103622544 -47161009 - MIR SINE MIR -48 214 79 674 144 0 0 chr11 103623853 103623950 -47159603 - ORSL DNA AcHobo -10 265 169 2295 91 0 10 chr11 103623955 103624252 -47159301 + AluSx SINE Alu 1 294 -18 210 37 0 0 chr11 103624252 103624279 -47159274 + (GA)n Simple_repeat Simple_repeat 2 28 0 257 209 30 45 chr11 103624279 103624346 -47159207 - ORSL DNA AcHobo -201 74 9 1293 229 51 51 chr11 103624686 103624938 -47158615 + L1MC4 LINE L1 7576 7827 -215 3655 133 55 9 chr11 103624938 103625515 -47158038 - MER6A DNA MER2_type -1 604 1 1293 229 51 51 chr11 103625515 103625587 -47157966 + L1MC4 LINE L1 7827 7898 -144 237 33 0 0 chr11 103625587 103625617 -47157936 + (TA)n Simple_repeat Simple_repeat 2 31 0 1293 229 51 51 chr11 103625617 103625758 -47157795 + L1MC4 LINE L1 7897 8042 0 549 327 67 39 chr11 103626219 103626607 -47156946 - LTR16C LTR ERVL -4 487 89 534 305 45 36 chr11 103626858 103626960 -47156593 - MIR SINE MIR 0 262 162 1241 207 24 0 chr11 103626960 103627173 -47156380 + MER20 DNA MER1_type 1 218 -1 534 305 45 36 chr11 103627173 103627293 -47156260 - MIR SINE MIR -100 162 38 1473 110 92 27 chr11 103627343 103627661 -47155892 - MER61C LTR ERV1 0 434 1 439 303 26 14 chr11 103628359 103628548 -47155005 + MIR SINE MIR 3 261 -1 370 366 5 5 chr11 103628857 103629059 -47154494 - L1ME3A LINE L1 -286 5884 5683 1076 293 123 31 chr11 103629083 103630064 -47153489 + L1ME LINE L1 3899 4970 -1176 279 330 23 45 chr11 103630391 103630612 -47152941 + L1ME LINE L1 5306 5521 -645 3393 117 28 41 chr11 103632436 103632695 -47150858 + L1PB4 LINE L1 5612 5873 -283 2428 94 3 0 chr11 103632695 103633003 -47150550 - AluSp SINE Alu -2 311 3 3393 117 28 41 chr11 103633003 103633283 -47150270 + L1PB4 LINE L1 5873 6144 -12 254 323 65 0 chr11 103633402 103633526 -47150027 - MER117 DNA MER1_type -36 161 30 2303 166 24 0 chr11 103633533 103633913 -47149640 - MLT1B LTR MaLR 0 390 2 2276 118 0 3 chr11 103633935 103634249 -47149304 + AluSq SINE Alu 1 313 0 24 32 0 0 chr11 103634588 103634619 -47148934 + AT_rich Low_complexity Low_complexity 1 31 0 13847 49 1 0 chr11 103634619 103636999 -47146554 - L1PA5 LINE L1 -7 6147 3768 992 214 5 9 chr11 103637059 103637279 -47146274 - L1MB3 LINE L1 0 6183 5965 1543 164 76 4 chr11 103637839 103638114 -47145439 - AluJb SINE Alu -17 295 1 250 232 36 0 chr11 103638554 103638610 -47144943 - L2 LINE L2 -5 3267 3210 419 200 244 34 chr11 103638954 103639159 -47144394 + MER112 DNA MER1_type 1 248 -12 212 205 0 0 chr11 103639169 103639208 -47144345 + MIR3 SINE MIR 156 194 -14 2020 152 3 0 chr11 103639461 103639763 -47143790 - AluSx SINE Alu -9 303 1 255 279 38 0 chr11 103640846 103640905 -47142648 + (TATATG)n Simple_repeat Simple_repeat 5 69 -17 8520 125 35 9 chr11 103640905 103642173 -47141380 - HSMAR2 DNA Mariner 0 1302 2 255 279 38 0 chr11 103642173 103642192 -47141361 + (TATATG)n Simple_repeat Simple_repeat 69 86 0 188 326 45 22 chr11 103643857 103643946 -47139607 - L2 LINE L2 -14 3299 3209 247 214 0 0 chr11 103644039 103644081 -47139472 - MIR SINE MIR -8 254 213 198 0 0 0 chr11 103644220 103644242 -47139311 + (T)n Simple_repeat Simple_repeat 1 22 0 1879 116 8 8 chr11 103644890 103645158 -47138395 + AluSx SINE Alu 1 268 -44 23 33 0 0 chr11 103645163 103645193 -47138360 + AT_rich Low_complexity Low_complexity 1 30 0 364 256 128 30 chr11 103645814 103645947 -47137606 + MIR3 SINE MIR 20 165 -43 210 71 0 0 chr11 103645970 103645998 -47137555 + (CATA)n Simple_repeat Simple_repeat 1 28 0 207 0 0 0 chr11 103646032 103646055 -47137498 + (TG)n Simple_repeat Simple_repeat 2 24 0 317 303 99 26 chr11 103646700 103646852 -47136701 - MIR SINE MIR -66 196 34 598 230 92 33 chr11 103647240 103647552 -47136001 - HAL1 LINE L1 -2 2505 2130 1401 124 30 0 chr11 103647552 103647754 -47135799 - MSTA LTR MaLR 0 428 221 572 208 0 48 chr11 103647980 103648105 -47135448 - L2 LINE L2 -2 3311 3193 992 251 121 54 chr11 103648641 103649211 -47134342 + L1ME3A LINE L1 3280 3887 -2259 * 2395 251 74 55 chr11 103649202 103649260 -47134293 + L1ME3A LINE L1 4182 4237 -1933 2314 88 7 0 chr11 103649260 103649556 -47133997 + AluSc SINE Alu 1 298 -11 2395 251 74 55 chr11 103649556 103649971 -47133582 + L1ME3A LINE L1 4237 4643 -1527 2136 83 0 0 chr11 103649971 103650235 -47133318 + AluSg SINE Alu 33 296 -14 2395 251 74 55 chr11 103650235 103650752 -47132801 + L1ME3A LINE L1 4643 5149 -1021 1535 152 95 14 chr11 103650752 103651035 -47132518 + AluJo SINE Alu 1 306 -6 2395 251 74 55 chr11 103651035 103651993 -47131560 + L1ME3A LINE L1 5149 6161 -9 21 82 0 0 chr11 103651999 103652048 -47131505 + AT_rich Low_complexity Low_complexity 1 49 0 1672 137 20 23 chr11 103652114 103652413 -47131140 + AluJo SINE Alu 6 303 -9 788 135 92 7 chr11 103652662 103652803 -47130750 - L1PA15 LINE L1 -1 6164 6012 6615 135 40 28 chr11 103652886 103654080 -47129473 - Tigger3b DNA MER2_type 0 1231 23 582 245 88 29 chr11 103654740 103654944 -47128609 - L1ME1 LINE L1 -5 6161 5946 924 172 89 5 chr11 103654948 103655151 -47128402 - L1M4 LINE L1 -1192 4954 4735 2207 104 0 3 chr11 103655319 103655607 -47127946 - AluSq SINE Alu -26 287 1 236 313 12 0 chr11 103657221 103657301 -47126252 + CT-rich Low_complexity Low_complexity 2 82 0 333 118 0 0 chr11 103657432 103657483 -47126070 + (TG)n Simple_repeat Simple_repeat 1 51 0 2387 60 10 7 chr11 103659192 103659491 -47124062 + AluSp SINE Alu 1 300 -13 21 57 0 0 chr11 103660053 103660088 -47123465 + AT_rich Low_complexity Low_complexity 1 35 0 1119 135 53 34 chr11 103661033 103661240 -47122313 + MER20 DNA MER1_type 5 215 -4 234 62 0 0 chr11 103661925 103661957 -47121596 + (CAGTT)n Simple_repeat Simple_repeat 4 35 0 2703 80 3 11 chr11 103662353 103662717 -47120836 - L1PA10 LINE L1 -3 6165 5805 214 250 16 16 chr11 103664287 103664351 -47119202 + L2 LINE L2 3242 3305 -8 203 301 48 30 chr11 103664667 103664833 -47118720 + L2 LINE L2 1938 2106 -1208 215 355 79 0 chr11 103664892 103665044 -47118509 + L2 LINE L2 2226 2389 -925 239 266 229 21 chr11 103665312 103665500 -47118053 + MIR SINE MIR 15 241 -21 392 248 68 17 chr11 103666600 103666717 -47116836 + MIR SINE MIR 57 179 -83 180 239 194 0 chr11 103666786 103666853 -47116700 + L2 LINE L2 3206 3285 -28 291 261 153 27 chr11 103667301 103667412 -47116141 - MIR SINE MIR -107 155 31 2244 97 7 0 chr11 103668588 103668878 -47114675 + AluSx SINE Alu 1 292 -20 2036 104 3 10 chr11 103668950 103669239 -47114314 - AluSp SINE Alu -26 287 1 1407 174 25 47 chr11 103669269 103669611 -47113942 + MER33 DNA MER1_type 1 323 -1 386 148 26 150 chr11 103670427 103670638 -47112915 + Charlie5 DNA MER1_type 35 2617 0 833 291 16 16 chr11 103671763 103672017 -47111536 - MIR SINE MIR -1 261 8 195 100 0 0 chr11 103673102 103673132 -47110421 + (T)n Simple_repeat Simple_repeat 1 30 0 2860 73 98 0 chr11 103673538 103673946 -47109607 + LTR7 LTR ERV1 1 448 -2 20143 89 22 25 chr11 103673948 103676944 -47106609 + HERVH LTR ERV1 1 2987 -4726 937 128 20 0 chr11 103676938 103677086 -47106467 + HERVH LTR ERV1 3140 3290 -4423 * 3452 111 4 6 chr11 103677076 103677579 -47105974 + HERVH LTR ERV1 3492 3993 -3720 4424 143 0 1 chr11 103677581 103678244 -47105309 + HERVH LTR ERV1 4488 5149 -2564 1430 111 23 9 chr11 103678245 103678462 -47105091 + HERVH LTR ERV1 5600 5819 -1894 2373 104 50 13 chr11 103678462 103678838 -47104715 + HERVH LTR ERV1 7324 7713 0 2961 68 95 0 chr11 103678838 103679247 -47104306 + LTR7 LTR ERV1 1 448 -2 515 218 7 23 chr11 103679249 103679382 -47104171 - MIR SINE MIR -67 141 24 504 336 74 40 chr11 103679382 103680059 -47103494 - L2 LINE L2 0 3272 2562 228 321 149 42 chr11 103680698 103680913 -47102640 + MIR SINE MIR 14 251 -11 2259 109 0 0 chr11 103681527 103681843 -47101710 + AluSx SINE Alu 1 316 0 439 97 72 267 chr11 103681944 103682139 -47101414 + MER51B LTR ERV1 1 157 -220 1710 160 43 10 chr11 103682141 103682441 -47101112 + MER51B LTR ERV1 68 377 0 1223 163 41 56 chr11 103682443 103682713 -47100840 + MER51B-int LTR ERV1 1 266 -7550 1153 241 63 82 chr11 103682738 103683313 -47100240 + MER51B-int LTR ERV1 220 809 -4378 499 301 20 17 chr11 103683425 103683731 -47099822 + MER51B-int LTR ERV1 683 1812 -3885 256 325 47 0 chr11 103684016 103684145 -47099408 + MER51B-int LTR ERV1 1743 2201 -5908 378 266 57 58 chr11 103684344 103684703 -47098850 + MER51A-int LTR ERV1 1466 1680 -4849 3119 309 60 53 chr11 103685420 103688506 -47095047 + MER51A-int LTR ERV1 2779 6268 -1086 1902 166 41 0 chr11 103688652 103688971 -47094582 + MER51A-int LTR ERV1 7484 7815 -1 495 172 49 28 chr11 103688973 103689106 -47094447 + MER51A LTR ERV1 1 138 -239 248 128 0 21 chr11 103689118 103689165 -47094388 + MER51B LTR ERV1 109 154 -223 1691 162 50 10 chr11 103689165 103689468 -47094085 + MER51B LTR ERV1 63 377 0 377 277 75 22 chr11 103692501 103692668 -47090885 - MIR SINE MIR -51 211 39 1877 239 112 55 chr11 103692986 103693756 -47089797 + L2 LINE L2 2002 2815 -499 266 224 201 22 chr11 103693778 103693912 -47089641 + L2 LINE L2 3143 3300 -13 240 228 127 0 chr11 103694617 103694696 -47088857 + MIR SINE MIR 118 206 -56 277 29 0 0 chr11 103694921 103694956 -47088597 + L1PB3 LINE L1 6115 6149 -5 21 36 0 0 chr11 103694969 103694997 -47088556 + AT_rich Low_complexity Low_complexity 1 28 0 1608 188 47 94 chr11 103695151 103695640 -47087913 + MLT1C LTR MaLR 2 467 0 35 54 0 0 chr11 103695965 103696021 -47087532 + AT_rich Low_complexity Low_complexity 1 56 0 617 263 17 39 chr11 103696111 103696290 -47087263 - MER5B DNA MER1_type 0 178 4 377 171 26 0 chr11 103696295 103696371 -47087182 - MIR3 SINE MIR -50 158 81 200 293 116 0 chr11 103696362 103696509 -47087044 + L2 LINE L2 2901 3064 -208 * 297 211 74 11 chr11 103696809 103696904 -47086649 - L1ME4a LINE L1 -6 6115 6015 190 204 61 0 chr11 103697045 103697094 -47086459 - MIR SINE MIR -60 202 151 363 272 58 0 chr11 103697291 103697394 -47086159 + MER91C DNA MER1_type 1 109 -31 292 217 152 0 chr11 103698060 103698152 -47085401 - MIR SINE MIR -39 223 118 444 335 137 0 chr11 103698671 103698883 -47084670 + L2 LINE L2 2509 2749 -565 1052 210 49 0 chr11 103698889 103699094 -47084459 + MER58A DNA MER1_type 9 223 -1 1681 184 79 12 chr11 103699227 103699569 -47083984 + MLT1A1 LTR MaLR 1 365 0 208 274 60 34 chr11 103700758 103700875 -47082678 + MIR3 SINE MIR 66 185 -23 490 188 87 7 chr11 103701466 103701604 -47081949 - MIR3 SINE MIR -22 186 38 299 342 50 0 chr11 103701683 103701803 -47081750 - L2 LINE L2 -8 3264 3139 312 330 61 0 chr11 103701925 103702040 -47081513 + L2 LINE L2 3147 3268 -4 191 310 0 0 chr11 103702070 103702128 -47081425 + MIR SINE MIR 92 149 -113 310 245 58 0 chr11 103702197 103702336 -47081217 + (TA)n Simple_repeat Simple_repeat 1 147 0 2167 112 133 16 chr11 103702438 103702821 -47080732 + MSTA LTR MaLR 1 428 0 7630 166 102 21 chr11 103703359 103704932 -47078621 + MER52A LTR ERV1 1 1755 0 248 222 0 0 chr11 103704934 103704988 -47078565 + MIR SINE MIR 183 236 -26 343 271 93 8 chr11 103705387 103705505 -47078048 - MIR SINE MIR -62 146 19 345 295 51 59 chr11 103706518 103706705 -47076848 + MIR SINE MIR 30 214 -48 181 274 0 0 chr11 103707178 103707229 -47076324 + L2 LINE L2 3262 3312 -1 243 316 61 10 chr11 103707394 103707492 -47076061 - L2 LINE L2 -1 3271 3169 491 327 63 60 chr11 103707606 103707713 -47075840 - HAL1 LINE L1 -774 1733 1628 2319 96 0 16 chr11 103707713 103708016 -47075537 + AluY SINE Alu 1 298 -13 491 327 63 60 chr11 103708016 103708257 -47075296 - HAL1 LINE L1 -879 1628 1384 235 299 66 36 chr11 103708269 103708436 -47075117 - L1MEd LINE L1 -4862 1208 1037 320 231 111 60 chr11 103708466 103708583 -47074970 - L1MEd LINE L1 -5108 962 840 21 0 0 0 chr11 103708831 103708852 -47074701 + AT_rich Low_complexity Low_complexity 1 21 0 2323 110 56 34 chr11 103709167 103709523 -47074030 + THE1B LTR MaLR 1 364 0 12359 95 6 9 chr11 103709523 103711107 -47072446 + THE1B-int LTR MaLR 1 1580 0 2440 103 60 23 chr11 103711107 103711458 -47072095 + THE1B LTR MaLR 1 364 0 1068 336 19 21 chr11 103711597 103711847 -47071706 - LTR16B LTR ERVL 0 464 214 2144 130 118 45 chr11 103711847 103712246 -47071307 - MSTA LTR MaLR 0 428 1 1068 336 19 21 chr11 103712246 103712427 -47071126 - LTR16B LTR ERVL -250 214 34 281 220 17 0 chr11 103712625 103712684 -47070869 + L2 LINE L2 3250 3309 -4 595 254 37 9 chr11 103712766 103712938 -47070615 - MIR SINE MIR -67 141 15 336 191 19 95 chr11 103712988 103713034 -47070519 - MIR3 SINE MIR -9 199 151 636 235 16 64 chr11 103713034 103713221 -47070332 + MER5B DNA MER1_type 1 178 0 336 191 19 95 chr11 103713221 103713279 -47070274 - MIR3 SINE MIR -57 151 103 180 0 0 0 chr11 103713448 103713468 -47070085 + (A)n Simple_repeat Simple_repeat 1 20 0 1195 203 19 57 chr11 103713470 103713679 -47069874 + L1M3a LINE L1 1001 1182 -4773 2350 88 0 3 chr11 103713679 103713975 -47069578 + AluY SINE Alu 1 295 -16 1195 203 19 57 chr11 103713975 103714177 -47069376 + L1M3a LINE L1 1182 1390 -4565 615 217 0 0 chr11 103714178 103714284 -47069269 + FLAM_C SINE Alu 2 107 -36 1783 277 39 11 chr11 103714330 103715115 -47068438 + L1M1 LINE L1 1314 2207 -4175 975 97 0 0 chr11 103715119 103715243 -47068310 + AluSx SINE Alu 13 136 -177 2227 97 0 3 chr11 103715243 103715531 -47068022 + AluSg SINE Alu 1 287 -23 1253 144 0 0 chr11 103715567 103715791 -47067762 + AluSx SINE Alu 129 352 0 5899 211 28 17 chr11 103715793 103717357 -47066196 + L1M1 LINE L1 2201 3785 -2597 1258 313 97 24 chr11 103717461 103718648 -47064905 + L1M1 LINE L1 4290 5563 -819 448 294 15 25 chr11 103718662 103718866 -47064687 + L1ME4a LINE L1 5372 5573 -597 252 292 36 0 chr11 103718869 103719007 -47064546 + L1ME4a LINE L1 5610 5828 -334 1654 163 48 20 chr11 103719102 103719536 -47064017 - LTR45B LTR ERV1 0 783 3 1837 206 65 0 chr11 103719878 103720287 -47063266 + L1MC3 LINE L1 6256 6358 -1 253 294 161 11 chr11 103720263 103720443 -47063110 + L1ME4a LINE L1 5873 6079 -42 * 232 303 258 0 chr11 103720580 103720669 -47062884 - MER5A DNA MER1_type -35 154 43 192 325 28 13 chr11 103720614 103720690 -47062863 + MER5B DNA MER1_type 92 179 -10 * 854 179 132 32 chr11 103721293 103721483 -47062070 - MER3 DNA MER1_type 0 209 1 287 185 136 12 chr11 103721649 103721730 -47061823 + MER20 DNA MER1_type 1 91 -128 310 119 15 15 chr11 103721732 103721799 -47061754 + (TG)n Simple_repeat Simple_repeat 2 68 0 589 158 26 53 chr11 103721827 103721941 -47061612 + MER20 DNA MER1_type 109 219 0 275 133 22 0 chr11 103722284 103722329 -47061224 - MSTA LTR MaLR -3 425 380 2347 75 0 0 chr11 103722333 103722615 -47060938 + AluY SINE Alu 15 296 -15 641 251 137 39 chr11 103722871 103723152 -47060401 - MER93a LTR ERV1 0 402 77 2288 177 43 21 chr11 103723152 103723575 -47059978 - Tigger2a DNA MER2_type -2 432 1 641 251 137 39 chr11 103723575 103723651 -47059902 - MER93a LTR ERV1 -325 77 10 340 241 131 55 chr11 103723764 103723908 -47059645 + L1M4 LINE L1 2133 2265 -3881 1336 225 13 0 chr11 103723908 103724144 -47059409 - MER8 DNA MER2_type 0 239 1 340 241 131 55 chr11 103724144 103724451 -47059102 + L1M4 LINE L1 2265 2618 -3528 456 258 107 66 chr11 103724534 103724852 -47058701 + L1M4 LINE L1 2880 3210 -2936 424 233 128 17 chr11 103724856 103725028 -47058525 - L1MC5 LINE L1 -26 7935 7745 230 279 109 30 chr11 103725068 103725269 -47058284 + L1M4 LINE L1 3239 3455 -2691 469 226 221 60 chr11 103725272 103725471 -47058082 + MIR SINE MIR 5 235 -27 853 290 44 39 chr11 103725511 103726056 -47057497 + L1M4 LINE L1 3476 4023 -2123 25 0 0 0 chr11 103726056 103726081 -47057472 + AT_rich Low_complexity Low_complexity 1 25 0 2906 7 0 0 chr11 103726109 103726419 -47057134 + AluYb8 SINE Alu 1 310 -8 529 111 0 0 chr11 103727755 103727827 -47055726 - MLT1B LTR MaLR 0 390 319 558 246 0 0 chr11 103727838 103727956 -47055597 + L1M3a LINE L1 4 121 -5834 1359 268 118 18 chr11 103727991 103728498 -47055055 + L1M3a LINE L1 445 1002 -4953 1941 169 13 0 chr11 103728498 103728806 -47054747 + AluJo SINE Alu 1 312 0 239 314 195 31 chr11 103728954 103729027 -47054526 + L2 LINE L2 2428 2488 -826 4953 148 40 3 chr11 103729027 103729782 -47053771 - LTR39 LTR ERV1 0 783 1 239 314 195 31 chr11 103729782 103729969 -47053584 + L2 LINE L2 2488 2731 -583 211 227 0 57 chr11 103730550 103730638 -47052915 + MIR3 SINE MIR 5 87 -121 277 333 30 54 chr11 103730966 103731134 -47052419 - MIR SINE MIR -50 212 49 2004 154 23 23 chr11 103734014 103734357 -47049196 + MER61A LTR ERV1 1 343 0 542 223 103 9 chr11 103734384 103734596 -47048957 + MLT1E LTR MaLR 1 252 -402 2520 61 0 0 chr11 103734805 103735101 -47048452 - AluY SINE Alu -15 296 1 2185 110 0 3 chr11 103735838 103736130 -47047423 + AluSg SINE Alu 1 291 -19 740 97 10 10 chr11 103736475 103736578 -47046975 + AluSq/x SINE Alu 2 104 -208 279 297 110 0 chr11 103736991 103737109 -47046444 - L2 LINE L2 -755 2559 2429 1285 50 0 13 chr11 103738234 103738393 -47045160 - AluY SINE Alu -8 303 147 363 364 87 0 chr11 103738507 103738702 -47044851 + MIR SINE MIR 26 237 -25 2410 227 125 16 chr11 103739003 103739691 -47043862 - L2 LINE L2 -1181 2133 1371 193 211 0 0 chr11 103740815 103740853 -47042700 + MIR SINE MIR 117 154 -108 258 56 0 0 chr11 103740995 103741031 -47042522 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chr11 103741598 103741627 -47041926 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr11 103742158 103742182 -47041371 + AT_rich Low_complexity Low_complexity 1 24 0 30 45 0 0 chr11 103743587 103743631 -47039922 + AT_rich Low_complexity Low_complexity 1 44 0 257 302 52 0 chr11 103744143 103744239 -47039314 - MIR SINE MIR -60 148 48 535 261 48 68 chr11 103744996 103745203 -47038350 + MIR SINE MIR 34 236 -26 1050 146 0 0 chr11 103745494 103745645 -47037908 + FAM SINE Alu 8 158 -27 4296 228 76 36 chr11 103745731 103746680 -47036873 + L1MA9 LINE L1 1 911 -5299 2215 121 0 3 chr11 103746680 103746994 -47036559 + AluSq SINE Alu 1 313 0 4296 228 76 36 chr11 103746994 103747229 -47036324 + L1MA9 LINE L1 911 1135 -5075 1928 136 7 7 chr11 103747229 103747515 -47036038 + AluSg SINE Alu 1 286 -24 4296 228 76 36 chr11 103747515 103749358 -47034195 + L1MA9 LINE L1 1135 2941 -3269 1984 179 97 42 chr11 103749358 103749760 -47033793 - MSTB LTR MaLR -2 424 1 4296 228 76 36 chr11 103749760 103749947 -47033606 + L1MA9 LINE L1 2941 3119 -3091 715 201 13 25 chr11 103749932 103750091 -47033462 + L1MA9 LINE L1 3775 3931 -2279 * 5327 149 95 8 chr11 103750073 103751542 -47032011 + L1MA9 LINE L1 4771 6355 -21 21 0 0 0 chr11 103751550 103751571 -47031982 + AT_rich Low_complexity Low_complexity 1 21 0 709 304 52 9 chr11 103752038 103752268 -47031285 - MIR SINE MIR -1 261 22 22 0 0 0 chr11 103753598 103753620 -47029933 + AT_rich Low_complexity Low_complexity 1 22 0 2142 93 0 21 chr11 103754441 103754732 -47028821 - AluSg SINE Alu -15 295 11 2154 97 0 20 chr11 103754832 103755131 -47028422 - AluSg SINE Alu -17 293 1 25 75 0 0 chr11 103755316 103755369 -47028184 + AT_rich Low_complexity Low_complexity 1 53 0 5092 181 138 14 chr11 103755551 103756750 -47026803 + L1MC4 LINE L1 6696 8042 0 217 281 31 0 chr11 103759120 103759184 -47024369 + L2 LINE L2 3245 3310 -3 233 272 105 31 chr11 103760053 103760215 -47023338 + MIR3 SINE MIR 33 206 -2 8625 74 12 10 chr11 103760344 103761413 -47022140 + MER11C LTR ERVK 1 1071 0 501 256 168 0 chr11 103761703 103761840 -47021713 + MER5A DNA MER1_type 27 186 -3 249 307 186 7 chr11 103761840 103761970 -47021583 - MIR3 SINE MIR -49 159 5 2158 142 3 0 chr11 103762670 103762981 -47020572 + AluJo SINE Alu 1 312 0 246 95 0 0 chr11 103864197 103864239 -46919314 + (A)n Simple_repeat Simple_repeat 1 42 0 1954 93 0 0 chr11 103864419 103864665 -46918888 - AluSq SINE Alu -67 246 1 2153 122 6 13 chr11 103865032 103865344 -46918209 + AluSx SINE Alu 3 312 0 2440 106 0 0 chr11 103865582 103865893 -46917660 + AluSx SINE Alu 1 311 -1 1033 244 80 44 chr11 103865961 103866409 -46917144 - MLT1C LTR MaLR 0 467 2 2285 112 0 7 chr11 103866504 103866808 -46916745 - AluSx SINE Alu -10 302 1 2467 39 0 0 chr11 103866913 103867241 -46916312 + AluY SINE Alu 1 328 0 2514 70 0 0 chr11 103867395 103867695 -46915858 - AluSg SINE Alu -10 300 1 243 0 0 0 chr11 103868693 103868720 -46914833 + (TG)n Simple_repeat Simple_repeat 2 28 0 1431 134 5 0 chr11 103869809 103870011 -46913542 + AluSx SINE Alu 10 212 -100 467 0 0 0 chr11 103870011 103870065 -46913488 + AluSq/x SINE Alu 78 131 -181 933 140 0 7 chr11 103870069 103870205 -46913348 + AluSq/x SINE Alu 1 135 -178 2339 96 0 3 chr11 103870205 103870506 -46913047 + AluSx SINE Alu 1 300 -12 1096 70 5 32 chr11 103870779 103870964 -46912589 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 219 139 0 0 chr11 103870964 103871000 -46912553 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 1192 40 17 17 chr11 103871000 103871177 -46912376 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 612 116 0 0 chr11 103871183 103871278 -46912275 - MER41B LTR ERV1 -88 547 453 2063 105 0 41 chr11 103871287 103871602 -46911951 - AluSx SINE Alu 0 303 1 530 230 0 70 chr11 103872654 103872841 -46910712 + L1MB8 LINE L1 5897 6070 -108 691 167 0 24 chr11 103872974 103873100 -46910453 - FLAM_C SINE Alu -12 131 9 2024 113 35 0 chr11 103873225 103873508 -46910045 + AluSx SINE Alu 1 293 -19 261 218 0 18 chr11 103874084 103874139 -46909414 + THE1C LTR MaLR 99 152 -223 396 228 110 0 chr11 103874352 103874479 -46909074 + MLT1E LTR MaLR 16 156 -349 432 136 0 0 chr11 103874491 103874557 -46908996 - AluS SINE Alu -246 67 2 778 192 77 23 chr11 103874576 103874781 -46908772 + THE1C LTR MaLR 1 193 -182 508 233 0 48 chr11 103874883 103875072 -46908481 + CT-rich Low_complexity Low_complexity 1 180 0 1066 240 51 11 chr11 103875111 103875441 -46908112 + MLT1E LTR MaLR 167 593 0 811 146 7 20 chr11 103875672 103875823 -46907730 - LTR7 LTR ERV1 0 450 302 881 132 8 18 chr11 103876361 103876529 -46907024 - LTR7 LTR ERV1 -232 218 1 180 0 0 0 chr11 103877634 103877654 -46905899 + (TAA)n Simple_repeat Simple_repeat 2 21 0 258 119 24 0 chr11 103878253 103878295 -46905258 + CT-rich Low_complexity Low_complexity 4 46 0 878 129 0 32 chr11 103878295 103878481 -46905072 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 897 187 18 9 chr11 103878483 103878780 -46904773 + CT-rich Low_complexity Low_complexity 1 489 -20 1002 113 0 32 chr11 103878780 103878966 -46904587 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 897 187 18 9 chr11 103878966 103878988 -46904565 + CT-rich Low_complexity Low_complexity 489 509 0 2095 135 16 0 chr11 103878988 103879291 -46904262 - AluSg SINE Alu -2 308 1 2489 65 7 3 chr11 103879361 103879668 -46903885 + AluY SINE Alu 1 308 -3 758 200 14 52 chr11 103879681 103879839 -46903714 + L1MA8 LINE L1 6086 6236 -55 2275 111 3 9 chr11 103879839 103880154 -46903399 + AluSq SINE Alu 1 313 0 758 200 14 52 chr11 103880154 103880205 -46903348 + L1MA8 LINE L1 6236 6287 -4 1066 91 0 0 chr11 103880214 103880346 -46903207 + AluSg/x SINE Alu 171 302 -8 1392 190 30 15 chr11 103880405 103880673 -46902880 + AluJo SINE Alu 26 297 -15 2325 104 3 0 chr11 103880677 103880975 -46902578 + AluSg SINE Alu 1 299 -11 1474 147 3 98 chr11 103880980 103881306 -46902247 + AluJo SINE Alu 3 297 -5 945 154 0 7 chr11 103881314 103881457 -46902096 + FRAM SINE Alu 5 146 -30 378 0 0 0 chr11 103881461 103881503 -46902050 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1611 147 9 100 chr11 103881503 103881843 -46901710 + AluJo SINE Alu 3 311 -1 407 90 0 0 chr11 103881986 103882053 -46901500 - AluSp/q SINE Alu -7 306 240 359 100 69 31 chr11 103882132 103882292 -46901261 + (TA)n Simple_repeat Simple_repeat 1 166 0 397 101 64 57 chr11 103882304 103882717 -46900836 + (TA)n Simple_repeat Simple_repeat 1 416 0 231 209 67 0 chr11 103882746 103882851 -46900702 + (TA)n Simple_repeat Simple_repeat 2 113 0 215 105 58 23 chr11 103882862 103882948 -46900605 + (TA)n Simple_repeat Simple_repeat 2 90 0 39 50 0 0 chr11 103882952 103883012 -46900541 + AT_rich Low_complexity Low_complexity 1 60 0 202 132 38 0 chr11 103883023 103883076 -46900477 + (TA)n Simple_repeat Simple_repeat 2 56 0 2011 112 7 7 chr11 103883163 103883448 -46900105 - AluJb SINE Alu -27 285 1 1821 137 0 22 chr11 103884199 103884477 -46899076 - AluJo SINE Alu -16 296 25 2287 107 0 0 chr11 103884558 103884847 -46898706 - AluSx SINE Alu -23 289 1 703 92 0 43 chr11 103884994 103885135 -46898418 + (TCCCC)n Simple_repeat Simple_repeat 5 139 0 207 162 0 0 chr11 103885135 103885172 -46898381 + T-rich Low_complexity Low_complexity 4 40 0 440 188 10 10 chr11 103885174 103885260 -46898293 - AluSp/q SINE Alu -1 312 224 1468 138 0 9 chr11 103885260 103885484 -46898069 + AluJo SINE Alu 86 307 -5 440 188 10 10 chr11 103885484 103885498 -46898055 - AluSp/q SINE Alu -88 225 212 321 26 0 0 chr11 103885513 103885551 -46898002 + (TC)n Simple_repeat Simple_repeat 2 39 0 272 182 55 9 chr11 103885551 103885661 -46897892 + (TA)n Simple_repeat Simple_repeat 2 116 0 237 122 44 61 chr11 103885689 103885870 -46897683 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 460 91 16 50 chr11 103885887 103886008 -46897545 + (TCTA)n Simple_repeat Simple_repeat 1 117 0 2196 116 0 3 chr11 103886031 103886323 -46897230 + AluSg SINE Alu 1 291 -19 309 131 10 50 chr11 103886323 103886422 -46897131 + (TA)n Simple_repeat Simple_repeat 1 95 0 408 40 0 0 chr11 103886466 103886516 -46897037 + (CA)n Simple_repeat Simple_repeat 2 51 0 821 328 61 17 chr11 103886523 103886935 -46896618 - L1M4 LINE L1 -2389 3757 3328 613 294 106 20 chr11 103886955 103887312 -46896241 + L2 LINE L2 2034 2421 -893 2546 211 22 88 chr11 103887400 103887853 -46895700 - L1PA16 LINE L1 0 6166 5788 2239 128 0 0 chr11 103887853 103888151 -46895402 - AluSx SINE Alu -14 298 1 2546 211 22 88 chr11 103888151 103888503 -46895050 - L1PA16 LINE L1 -378 5788 5414 311 89 18 0 chr11 103888629 103888685 -46894868 - L1PB1 LINE L1 -5 6146 6090 885 141 0 0 chr11 103889118 103889260 -46894293 - L1PB1 LINE L1 -45 6106 5965 406 179 0 0 chr11 103889261 103889351 -46894202 - AluY SINE Alu 0 303 214 2241 119 0 0 chr11 103889368 103889662 -46893891 - AluY SINE Alu -17 294 1 1059 88 112 0 chr11 103889663 103889833 -46893720 - L1PB1 LINE L1 -174 5977 5789 204 158 0 0 chr11 103889873 103889911 -46893642 + CT-rich Low_complexity Low_complexity 1 38 0 1501 174 42 8 chr11 103889913 103890172 -46893381 - AluJb SINE Alu -10 302 35 600 123 75 28 chr11 103890172 103890278 -46893275 - AluJo SINE Alu -116 196 86 1382 154 37 9 chr11 103890278 103890492 -46893061 - AluJo SINE Alu -92 220 1 831 342 103 17 chr11 103890682 103891202 -46892351 - MLT1E2 LTR MaLR 0 626 62 941 215 10 19 chr11 103891202 103891411 -46892142 + MER39B LTR ERV1 1 207 -446 345 168 26 124 chr11 103891381 103891453 -46892100 + MER39B LTR ERV1 106 165 -488 * 2318 108 3 0 chr11 103891453 103891759 -46891794 + AluSx SINE Alu 1 307 -5 345 168 26 124 chr11 103891759 103891799 -46891754 + MER39B LTR ERV1 165 207 -446 * 358 186 14 0 chr11 103891768 103891838 -46891715 + MER39B LTR ERV1 106 176 -477 1381 96 0 0 chr11 103891840 103892017 -46891536 + AluSg/x SINE Alu 136 312 0 325 181 26 112 chr11 103892040 103892115 -46891438 + MER39B LTR ERV1 102 165 -488 2137 125 3 0 chr11 103892115 103892411 -46891142 + AluSx SINE Alu 1 297 -15 325 181 26 112 chr11 103892411 103892451 -46891102 + MER39B LTR ERV1 165 207 -446 * 340 188 29 0 chr11 103892421 103892490 -46891063 + MER39B LTR ERV1 106 176 -477 2397 90 3 0 chr11 103892492 103892803 -46890750 + AluSx SINE Alu 1 312 0 288 247 14 0 chr11 103892835 103892908 -46890645 + MER39B LTR ERV1 103 176 -477 2350 84 0 0 chr11 103892910 103893208 -46890345 + AluSx SINE Alu 1 298 -14 2693 171 39 19 chr11 103893217 103893678 -46889875 + MER39B LTR ERV1 106 581 -72 2543 69 3 0 chr11 103893678 103893982 -46889571 - AluSx SINE Alu -7 305 1 2693 171 39 19 chr11 103893982 103894057 -46889496 + MER39B LTR ERV1 581 653 0 225 284 15 0 chr11 103894057 103894101 -46889452 - MLT1E2 LTR MaLR -434 71 27 273 119 0 0 chr11 103894959 103895001 -46888552 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 1284 106 0 0 chr11 103895002 103895365 -46888188 + (TGGA)n Simple_repeat Simple_repeat 1 363 0 23 68 0 0 chr11 103895830 103895874 -46887679 + GC_rich Low_complexity Low_complexity 1 44 0 387 0 0 0 chr11 103897544 103897587 -46885966 + (GA)n Simple_repeat Simple_repeat 2 44 0 879 96 0 0 chr11 103898306 103898485 -46885068 + L1PA5 LINE L1 6012 6190 0 446 84 65 0 chr11 103898827 103898934 -46884619 + GA-rich Low_complexity Low_complexity 2 115 0 866 85 25 28 chr11 103898937 103899475 -46884078 + (GA)n Simple_repeat Simple_repeat 1 536 0 672 122 37 0 chr11 103899482 103899646 -46883907 + GA-rich Low_complexity Low_complexity 2 171 0 209 111 28 0 chr11 103900563 103900599 -46882954 + T-rich Low_complexity Low_complexity 3 39 0 530 93 0 46 chr11 103900830 103900938 -46882615 + (TTTC)n Simple_repeat Simple_repeat 1 103 0 788 61 0 38 chr11 103900991 103901123 -46882430 + (TTTC)n Simple_repeat Simple_repeat 1 127 0 624 195 0 0 chr11 103905650 103905809 -46877744 + CT-rich Low_complexity Low_complexity 2 160 0 2488 80 0 0 chr11 103907714 103907744 -46875809 - AluSx SINE Alu 0 312 283 220 36 0 0 chr11 103907744 103907772 -46875781 + (TTTG)n Simple_repeat Simple_repeat 1 76 0 2488 80 0 0 chr11 103907772 103908053 -46875500 - AluSx SINE Alu -28 284 1 26 0 0 0 chr11 103911056 103911082 -46872471 + GC_rich Low_complexity Low_complexity 1 26 0 312 244 151 17 chr11 103911230 103911349 -46872204 - L1MC4 LINE L1 -1295 6747 6613 249 33 0 0 chr11 103912076 103912106 -46871447 + (GA)n Simple_repeat Simple_repeat 1 30 0 345 302 0 10 chr11 103912334 103912430 -46871123 + L1MC4 LINE L1 6609 6703 -1339 * 350 252 79 24 chr11 103912354 103912481 -46871072 - L1MCa LINE L1 -4362 2064 1931 * 410 332 53 51 chr11 103912409 103912855 -46870698 + L1MC4 LINE L1 741 6772 -1339 216 0 0 0 chr11 103912999 103913023 -46870530 + (TA)n Simple_repeat Simple_repeat 2 25 0 2082 104 3 14 chr11 103915773 103916099 -46867454 + AluSx SINE Alu 1 312 0 2168 116 0 0 chr11 103916116 103916426 -46867127 + AluSx SINE Alu 1 310 -2 1495 81 12 65 chr11 103916429 103916675 -46866878 + AluY SINE Alu 79 311 0 882 115 15 0 chr11 103917333 103917463 -46866090 + AluSq/x SINE Alu 1 132 -181 1987 99 31 27 chr11 103917464 103917758 -46865795 + AluSx SINE Alu 5 299 -13 212 143 0 0 chr11 103920520 103920555 -46862998 + (CCG)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr11 103920633 103920661 -46862892 + GC_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr11 103921387 103921408 -46862145 + (T)n Simple_repeat Simple_repeat 1 21 0 27 29 0 0 chr11 103921517 103921551 -46862002 + AT_rich Low_complexity Low_complexity 1 34 0 1997 90 0 4 chr11 103921871 103922149 -46861404 - AluSx SINE Alu -2 310 34 1385 98 0 10 chr11 103923070 103923263 -46860290 - AluSq SINE Alu -20 293 103 585 118 10 59 chr11 103923263 103923365 -46860188 - AluY SINE Alu -130 181 85 319 161 0 18 chr11 103923365 103923421 -46860132 - AluY SINE Alu -140 161 107 582 138 0 11 chr11 103923421 103923508 -46860045 - AluY SINE Alu -124 187 102 559 149 0 11 chr11 103923503 103923590 -46859963 - AluY SINE Alu -124 187 102 * 525 165 0 12 chr11 103923585 103923670 -46859883 - AluY SINE Alu -124 187 104 * 1172 122 0 21 chr11 103923670 103923859 -46859694 - AluSq SINE Alu -128 185 1 207 0 0 0 chr11 103924220 103924243 -46859310 + (TTCC)n Simple_repeat Simple_repeat 1 23 0 305 339 18 9 chr11 103924243 103924355 -46859198 - L1M4 LINE L1 -2953 3193 3081 1995 135 3 3 chr11 103924360 103924672 -46858881 - AluSx SINE Alu 0 312 1 252 0 0 0 chr11 103926127 103926155 -46857398 + (A)n Simple_repeat Simple_repeat 1 28 0 214 182 0 0 chr11 103926723 103926767 -46856786 + A-rich Low_complexity Low_complexity 1 44 0 198 0 0 0 chr11 103926977 103926999 -46856554 + (A)n Simple_repeat Simple_repeat 1 22 0 1759 79 0 20 chr11 103927258 103927510 -46856043 - AluSg SINE Alu -15 295 49 22 0 0 0 chr11 103927622 103927644 -46855909 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 103927673 103927694 -46855859 + AT_rich Low_complexity Low_complexity 1 21 0 2278 89 0 13 chr11 103928301 103928614 -46854939 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr11 103928965 103928986 -46854567 + AT_rich Low_complexity Low_complexity 1 21 0 261 188 0 0 chr11 103929433 103929481 -46854072 - MADE1 DNA Mariner -26 54 7 777 129 8 8 chr11 103929503 103929627 -46853926 + AluJ SINE Alu 2 125 -187 357 90 0 128 chr11 103929633 103929711 -46853842 + L1PA10 LINE L1 6101 6168 0 291 117 0 54 chr11 103929711 103929779 -46853774 + L1PBa LINE L1 2922 2986 -3876 808 217 0 37 chr11 103929947 103930024 -46853529 + AluJ SINE Alu 117 195 -117 2224 93 3 10 chr11 103930024 103930334 -46853219 - AluSx SINE Alu -4 308 1 808 217 0 37 chr11 103930334 103930445 -46853108 + AluJ SINE Alu 195 298 -14 2053 96 7 3 chr11 103930458 103930740 -46852813 - AluSc SINE Alu -13 296 14 816 151 34 14 chr11 103930740 103930886 -46852667 + AluJo SINE Alu 72 220 -92 360 0 0 0 chr11 103930904 103930944 -46852609 + (TC)n Simple_repeat Simple_repeat 2 41 0 225 0 0 0 chr11 103930943 103930968 -46852585 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 1390 147 132 26 chr11 103931203 103931468 -46852085 + AluJb SINE Alu 1 293 -9 1119 164 37 9 chr11 103931473 103931687 -46851866 + AluJo SINE Alu 1 220 -92 1052 260 20 23 chr11 103931739 103931878 -46851675 + AluJo SINE Alu 2 140 -162 2327 54 0 7 chr11 103931878 103932172 -46851381 + AluY SINE Alu 9 300 -11 1052 260 20 23 chr11 103932172 103932332 -46851221 + AluJo SINE Alu 140 300 -2 500 116 0 0 chr11 103932341 103932410 -46851143 + AluJo SINE Alu 228 296 -16 495 127 0 0 chr11 103932419 103932490 -46851063 + AluJ/FRAM SINE Alu 228 298 -14 277 204 0 0 chr11 103932499 103932548 -46851005 + AluJ/FRAM SINE Alu 228 276 -26 2173 118 0 0 chr11 103933363 103933668 -46849885 - AluSx SINE Alu -7 305 1 2442 57 0 0 chr11 103933863 103934162 -46849391 - AluY SINE Alu -12 299 1 2241 95 0 0 chr11 103934162 103934457 -46849096 - AluSq SINE Alu -18 295 1 1823 154 0 16 chr11 103934465 103934770 -46848783 - AluJo SINE Alu -4 308 9 201 161 0 0 chr11 103934854 103934885 -46848668 + (TG)n Simple_repeat Simple_repeat 1 31 0 1056 133 42 0 chr11 103934991 103935157 -46848396 - AluSg/x SINE Alu -5 307 135 1991 111 10 0 chr11 103935158 103935446 -46848107 - AluSx SINE Alu -21 291 1 2143 118 3 6 chr11 103935446 103935759 -46847794 - AluSq SINE Alu -1 312 1 327 128 0 0 chr11 103935984 103936031 -46847522 + Alu SINE Alu 240 286 -16 186 43 0 0 chr11 103936032 103936055 -46847498 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 1181 171 0 9 chr11 103936776 103936986 -46846567 + AluJb SINE Alu 105 312 0 2085 92 0 0 chr11 103937104 103937407 -46846146 + AluY SINE Alu 1 303 0 467 338 50 5 chr11 103937972 103938191 -46845362 - L1MB5 LINE L1 -59 6115 5887 184 194 0 45 chr11 103938191 103938258 -46845295 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 334 333 18 9 chr11 103938258 103938372 -46845181 + L1MC4 LINE L1 6589 6703 -1339 318 274 22 54 chr11 103938303 103938439 -46845114 - L1MC4 LINE L1 -1140 6645 6541 * 344 196 0 147 chr11 103938442 103938544 -46845009 + L1MC4 LINE L1 6617 6703 -1339 * 346 253 15 24 chr11 103938525 103938648 -46844905 + L1MC4 LINE L1 1996 6983 -1339 * 369 304 0 22 chr11 103938602 103938694 -46844859 - L1MC4 LINE L1 -1339 6703 6614 364 286 0 22 chr11 103938654 103938745 -46844808 + L1MC4 LINE L1 6614 6702 -1340 * 300 351 35 18 chr11 103938720 103938834 -46844719 - L1MD3 LINE L1 -1327 6668 6553 316 128 0 103 chr11 103938722 103938800 -46844753 + L1MCa LINE L1 1995 2064 -4362 2135 110 0 3 chr11 103939342 103939651 -46843902 - AluSc SINE Alu -1 308 1 404 21 0 0 chr11 103939659 103939707 -46843846 - AluSg/x SINE Alu -179 131 84 805 213 160 0 chr11 103939707 103939895 -46843658 - AluJo SINE Alu -92 220 3 2131 117 7 0 chr11 103939910 103940084 -46843469 - AluSg SINE Alu 0 310 132 2268 84 0 0 chr11 103940084 103940382 -46843171 - AluY SINE Alu -13 298 1 2131 117 7 0 chr11 103940382 103940515 -46843038 - AluSg SINE Alu -178 132 1 538 211 57 133 chr11 103940765 103941082 -46842471 + MLT1C LTR MaLR 69 345 -122 414 167 53 9 chr11 103941151 103941263 -46842290 + MLT1D LTR MaLR 217 361 -122 1158 222 80 48 chr11 103941283 103941657 -46841896 + MLT1C LTR MaLR 11 396 -71 297 249 54 2 chr11 103941638 103941746 -46841807 + MLT1C LTR MaLR 300 396 -71 * 283 242 42 21 chr11 103941740 103941835 -46841718 + MLT1C LTR MaLR 300 396 -71 * 430 277 48 7 chr11 103941816 103941989 -46841564 + MLT1C LTR MaLR 300 463 -4 652 165 35 0 chr11 103943488 103943603 -46839950 - AluJb SINE Alu -20 292 174 195 39 0 0 chr11 103943626 103943642 -46839911 + (TTAA)n Simple_repeat Simple_repeat 1 19 -7 2156 93 3 0 chr11 103943642 103943932 -46839621 - AluY SINE Alu -20 291 1 195 39 0 0 chr11 103943932 103943941 -46839612 + (TTAA)n Simple_repeat Simple_repeat 18 26 0 28 29 0 0 chr11 103943977 103944012 -46839541 + AT_rich Low_complexity Low_complexity 1 35 0 1860 91 0 0 chr11 103944062 103944316 -46839237 - L1PA8 LINE L1 -26 6146 5893 4910 80 2 3 chr11 103944316 103944954 -46838599 + L1PA7 LINE L1 5504 6141 -13 210 37 0 0 chr11 103944958 103944985 -46838568 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1802 112 56 24 chr11 103944985 103945291 -46838262 + AluSg SINE Alu 1 310 0 1986 99 7 3 chr11 103945293 103945611 -46837942 + AluSq SINE Alu 1 319 0 1965 107 4 0 chr11 103946288 103946568 -46836985 - AluSx SINE Alu 0 312 32 2338 78 3 0 chr11 103946655 103946963 -46836590 - AluSx SINE Alu -3 309 1 777 183 0 0 chr11 103948276 103948407 -46835146 + AluJo/FLAM SINE Alu 2 132 -170 1422 104 68 0 chr11 103948409 103948630 -46834923 + AluY SINE Alu 1 236 -75 198 0 0 0 chr11 104048634 104048656 -46734897 + (GA)n Simple_repeat Simple_repeat 2 23 0 597 184 15 7 chr11 104048935 104049071 -46734482 + L1MB4 LINE L1 6044 6180 0 209 100 50 17 chr11 104049078 104049138 -46734415 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 866 52 39 13 chr11 104049151 104049306 -46734247 + (TAGA)n Simple_repeat Simple_repeat 3 161 0 1000 75 34 28 chr11 104049326 104049860 -46733693 + (TAGA)n Simple_repeat Simple_repeat 1 360 0 326 117 27 45 chr11 104049881 104049992 -46733561 + (TAGA)n Simple_repeat Simple_repeat 1 109 0 183 204 0 0 chr11 104050053 104050097 -46733456 + CT-rich Low_complexity Low_complexity 1 44 0 701 163 6 23 chr11 104050118 104050290 -46733263 + CT-rich Low_complexity Low_complexity 4 172 0 639 157 0 0 chr11 104050771 104050879 -46732674 + L1PB4 LINE L1 5581 5688 -468 1183 106 0 50 chr11 104050879 104051078 -46732475 + AluSx SINE Alu 1 189 -123 741 187 0 0 chr11 104051078 104051212 -46732341 + L1PB4 LINE L1 6016 6149 -7 1534 141 98 0 chr11 104051224 104051500 -46732053 + AluSx SINE Alu 4 304 0 202 325 0 13 chr11 104051705 104051782 -46731771 + (TG)n Simple_repeat Simple_repeat 1 76 0 239 239 0 0 chr11 104051882 104051928 -46731625 + (TG)n Simple_repeat Simple_repeat 1 46 0 213 228 76 13 chr11 104052001 104052080 -46731473 + (CATG)n Simple_repeat Simple_repeat 1 84 0 254 259 0 0 chr11 104052166 104052242 -46731311 + (TG)n Simple_repeat Simple_repeat 1 76 0 180 111 0 0 chr11 104052315 104052342 -46731211 + (TG)n Simple_repeat Simple_repeat 2 28 0 206 225 0 0 chr11 104052459 104052499 -46731054 + (TG)n Simple_repeat Simple_repeat 1 40 0 234 217 58 14 chr11 104052572 104052641 -46730912 + (CATG)n Simple_repeat Simple_repeat 1 72 0 207 162 0 0 chr11 104052727 104052764 -46730789 + (TG)n Simple_repeat Simple_repeat 2 38 0 773 173 45 56 chr11 104053402 104053760 -46729793 - FRAM SINE Alu 0 176 1 1421 70 0 0 chr11 104053775 104053961 -46729592 + AluY SINE Alu 120 305 -6 539 276 0 0 chr11 104053964 104054080 -46729473 - FLAM_A SINE Alu -16 117 2 23 0 0 0 chr11 104054080 104054103 -46729450 + AT_rich Low_complexity Low_complexity 1 23 0 1012 227 0 9 chr11 104054134 104054354 -46729199 - AluJo SINE Alu -92 220 3 244 150 0 0 chr11 104054360 104054400 -46729153 - Alu SINE Alu -177 125 86 1116 190 0 26 chr11 104054400 104054505 -46729048 - AluJo SINE Alu -92 220 114 2327 58 0 0 chr11 104054505 104054796 -46728757 + AluY SINE Alu 1 291 -20 207 0 0 0 chr11 104054796 104054819 -46728734 + (TA)n Simple_repeat Simple_repeat 2 24 0 1116 190 0 26 chr11 104054819 104054938 -46728615 - AluJo SINE Alu -196 116 1 23 33 0 0 chr11 104055023 104055053 -46728500 + AT_rich Low_complexity Low_complexity 1 30 0 1140 126 0 0 chr11 104055124 104055291 -46728262 - AluSg SINE Alu -143 167 1 908 180 16 86 chr11 104055291 104055536 -46728017 - MER4D LTR ERV1 -579 324 97 401 119 0 0 chr11 104055540 104055607 -46727946 - MLT2A2 LTR ERVL -2 451 385 984 105 0 0 chr11 104055607 104055740 -46727813 + AluSp SINE Alu 1 133 -180 2102 87 3 3 chr11 104055748 104056037 -46727516 + AluSg SINE Alu 5 293 -17 1639 210 41 31 chr11 104056037 104056184 -46727369 - MLT2A2 LTR ERVL -49 505 361 1496 64 0 0 chr11 104056184 104056372 -46727181 + AluY SINE Alu 77 264 -47 1639 210 41 31 chr11 104056372 104056711 -46726842 - MLT2A2 LTR ERVL -193 361 1 381 187 112 75 chr11 104056711 104056765 -46726788 - MER49 LTR ERV1 -820 103 42 2155 100 0 0 chr11 104056765 104057056 -46726497 + AluSg SINE Alu 1 291 -19 381 187 112 75 chr11 104057056 104057100 -46726453 - MER49 LTR ERV1 -881 42 1 865 263 70 18 chr11 104057967 104058298 -46725255 + MLT1C LTR MaLR 1 348 -119 1156 241 77 25 chr11 104058309 104058711 -46724842 + MLT1C LTR MaLR 5 427 -40 * 1345 221 66 31 chr11 104058691 104059072 -46724481 + MLT1C LTR MaLR 40 433 -34 416 163 12 0 chr11 104059094 104059180 -46724373 + GA-rich Low_complexity Low_complexity 3 89 0 2360 179 10 75 chr11 104059427 104059531 -46724022 - MER66B LTR ERV1 0 486 377 4809 79 2 0 chr11 104059531 104060151 -46723402 - L1PA7 LINE L1 0 6154 5534 2360 179 10 75 chr11 104060151 104060463 -46723090 - MER66B LTR ERV1 -109 377 108 1910 139 78 26 chr11 104060463 104060808 -46722745 - THE1B LTR MaLR -1 363 1 2360 179 10 75 chr11 104060808 104060910 -46722643 - MER66B LTR ERV1 -378 108 1 266 240 130 65 chr11 104060913 104061067 -46722486 - L2 LINE L2 -581 2733 2570 210 167 0 0 chr11 104061253 104061289 -46722264 + T-rich Low_complexity Low_complexity 1 36 0 2387 91 3 0 chr11 104061303 104061611 -46721942 + AluY SINE Alu 3 311 0 1857 151 3 14 chr11 104061616 104061900 -46721653 - AluSx SINE Alu -31 281 1 2511 96 0 0 chr11 104064256 104064568 -46718985 + AluSx SINE Alu 1 312 0 2327 84 17 0 chr11 104064610 104064909 -46718644 - AluY SINE Alu -7 304 1 1365 177 87 21 chr11 104065071 104065359 -46718194 + AluSg SINE Alu 1 307 -3 460 189 0 0 chr11 104065448 104065522 -46718031 - AluJ/FLAM SINE Alu -237 75 2 2349 87 0 7 chr11 104065599 104065908 -46717645 + AluSq SINE Alu 1 307 -6 2165 107 0 0 chr11 104067062 104067352 -46716201 + AluSx SINE Alu 1 290 -22 1137 179 0 10 chr11 104067499 104067700 -46715853 + AluSg/x SINE Alu 112 310 0 381 264 132 0 chr11 104067775 104067881 -46715672 - FLAM_C SINE Alu -13 120 1 73 76 0 0 chr11 104068498 104068655 -46714898 + AT_rich Low_complexity Low_complexity 1 157 0 242 263 45 0 chr11 104068660 104068816 -46714737 + (TA)n Simple_repeat Simple_repeat 2 164 0 95 77 0 0 chr11 104068816 104069023 -46714530 + AT_rich Low_complexity Low_complexity 1 207 0 2219 104 7 7 chr11 104069024 104069376 -46714177 + AluSg SINE Alu 1 352 0 784 246 5 15 chr11 104069425 104069620 -46713933 - MER58A DNA MER1_type 0 224 32 1801 158 0 18 chr11 104069811 104070131 -46713422 + AluJo SINE Alu 9 323 0 2453 88 0 3 chr11 104070164 104070517 -46713036 - AluSc SINE Alu 0 352 1 324 265 113 33 chr11 104070519 104070562 -46712991 - HAL1 LINE L1 -1206 1301 1263 1123 85 17 0 chr11 104070562 104070739 -46712814 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 324 265 113 33 chr11 104070739 104070846 -46712707 - HAL1 LINE L1 -1244 1263 1139 186 43 0 0 chr11 104071366 104071389 -46712164 + (A)n Simple_repeat Simple_repeat 1 23 0 2074 123 0 31 chr11 104071463 104071799 -46711754 - AluSg SINE Alu 0 310 1 2165 111 3 3 chr11 104071811 104072100 -46711453 - AluSq SINE Alu -12 301 13 2229 101 3 3 chr11 104072123 104072419 -46711134 - AluSq SINE Alu -17 296 1 790 175 13 206 chr11 104072572 104072630 -46710923 - MLT1B LTR MaLR 0 392 324 3159 167 4 15 chr11 104072630 104073163 -46710390 + MER1A DNA MER1_type 1 527 0 790 175 13 206 chr11 104073163 104073343 -46710210 - MLT1B LTR MaLR -68 324 204 631 167 0 9 chr11 104073392 104073500 -46710053 - Charlie3 DNA MER1_type -4 2706 2600 1079 68 27 9 chr11 104073500 104073722 -46709831 + (TCTA)n Simple_repeat Simple_repeat 1 226 0 571 105 0 23 chr11 104074366 104074452 -46709101 + AluSg SINE Alu 37 120 -190 2274 149 32 0 chr11 104074793 104075195 -46708358 + MSTC LTR MaLR 1 415 -13 2238 117 10 3 chr11 104075349 104075658 -46707895 + AluSq SINE Alu 1 311 -2 247 207 61 0 chr11 104075659 104075741 -46707812 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 405 78 44 22 chr11 104075779 104075869 -46707684 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 810 243 13 13 chr11 104075869 104076186 -46707367 - MLT2B1 LTR ERVL -39 481 269 559 238 9 10 chr11 104076156 104076437 -46707116 - MLT2B1 LTR ERVL -97 423 269 * 556 233 0 13 chr11 104076407 104076637 -46706916 - MLT2B1 LTR ERVL -111 443 269 * 588 237 0 18 chr11 104076607 104076888 -46706665 - MLT2B1 LTR ERVL -111 443 269 556 248 0 15 chr11 104076858 104077038 -46706515 - MLT2B1 LTR ERVL -111 443 269 * 624 220 0 14 chr11 104077008 104077174 -46706379 - MLT2B1 LTR ERVL -111 443 269 540 243 1 14 chr11 104077158 104077380 -46706173 - MLT2B1 LTR ERVL -123 431 267 * 554 231 0 8 chr11 104077358 104077588 -46705965 - MLT2B1 LTR ERVL -123 397 269 * 625 223 0 8 chr11 104077558 104077688 -46705865 - MLT2B1 LTR ERVL -123 397 269 621 202 0 8 chr11 104077658 104077838 -46705715 - MLT2B1 LTR ERVL -123 397 269 * 628 221 12 10 chr11 104077846 104078089 -46705464 - MLT2B1 LTR ERVL -95 459 269 521 259 0 15 chr11 104078059 104078190 -46705363 - MLT2B1 LTR ERVL -123 397 269 * 568 237 0 9 chr11 104078160 104078406 -46705147 - MLT2B1 LTR ERVL -123 397 269 722 266 78 83 chr11 104078410 104078805 -46704748 - MLT2B1 LTR ERVL -123 397 5 2167 126 0 28 chr11 104078862 104079179 -46704374 - AluSx SINE Alu -4 308 1 2141 115 0 23 chr11 104079208 104079513 -46704040 - AluSx SINE Alu -14 298 1 1270 172 0 35 chr11 104080276 104080508 -46703045 + Charlie3 DNA MER1_type 29 252 -2458 678 202 54 142 chr11 104083754 104084071 -46699482 + L1MA8 LINE L1 5997 6285 -6 1153 194 0 31 chr11 104084080 104084307 -46699246 + AluJo SINE Alu 1 220 -92 1494 204 0 37 chr11 104084363 104084662 -46698891 + AluJb SINE Alu 1 288 -24 2304 81 0 0 chr11 104084676 104084961 -46698592 + AluY SINE Alu 21 305 -6 22 56 0 0 chr11 104084976 104085012 -46698541 + AT_rich Low_complexity Low_complexity 1 36 0 1498 115 0 0 chr11 104086541 104086741 -46696812 + AluSq SINE Alu 3 202 -111 186 43 0 0 chr11 104086819 104086842 -46696711 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1671 189 0 0 chr11 104086846 104087127 -46696426 - AluJb SINE Alu -30 282 2 2279 128 0 0 chr11 104087137 104087443 -46696110 - AluSg SINE Alu -4 306 1 1868 93 4 0 chr11 104087632 104087868 -46695685 + AluSq SINE Alu 1 237 -76 351 241 97 68 chr11 104188422 104188629 -46594924 + MIR SINE MIR 49 261 -1 287 197 33 0 chr11 104188972 104189033 -46594520 - L2 LINE L2 -543 2771 2709 287 274 69 10 chr11 104189039 104189141 -46594412 + LTR67 LTR ERVL 427 534 -23 312 304 65 27 chr11 104189173 104189307 -46594246 - L2 LINE L2 -686 2628 2484 2455 145 2 42 chr11 104189307 104189713 -46593840 - MLT1B LTR MaLR 0 390 1 312 304 65 27 chr11 104189713 104189762 -46593791 - L2 LINE L2 -830 2484 2438 2180 125 0 0 chr11 104190633 104190929 -46592624 - AluSx SINE Alu -16 296 1 184 222 111 0 chr11 104192284 104192338 -46591215 - L3 LINE CR1 -1090 487 428 453 19 0 0 chr11 104192637 104192691 -46590862 + (CA)n Simple_repeat Simple_repeat 2 55 0 324 289 62 21 chr11 104193345 104193442 -46590111 + L2 LINE L2 3171 3271 -1 214 171 0 24 chr11 104195120 104195161 -46588392 + (CA)n Simple_repeat Simple_repeat 2 41 0 1327 139 21 64 chr11 104195176 104195457 -46588096 - L1MA10 LINE L1 -1 6333 6065 689 78 0 0 chr11 104195465 104195555 -46587998 - L1MA10 LINE L1 -536 5798 5709 287 281 110 0 chr11 104195638 104195720 -46587833 + L2 LINE L2 3181 3271 -1 681 299 38 53 chr11 104195901 104196242 -46587311 + L2 LINE L2 2971 3306 -7 487 324 62 43 chr11 104197061 104197317 -46586236 - MIR SINE MIR -1 261 1 252 259 47 59 chr11 104197360 104197445 -46586108 + MIR SINE MIR 31 114 -148 1683 164 0 21 chr11 104197672 104197952 -46585601 - AluJb SINE Alu -4 308 35 578 115 0 31 chr11 104197955 104198051 -46585502 + L1MA9 LINE L1 5984 6076 -236 262 298 48 35 chr11 104198145 104198262 -46585291 - MIR SINE MIR -87 121 2 1541 103 75 0 chr11 104199463 104199676 -46583877 - MER30 DNA MER1_type -1 229 1 327 220 132 76 chr11 104200998 104201211 -46582342 + MIR SINE MIR 8 234 -28 21 36 0 0 chr11 104201292 104201320 -46582233 + AT_rich Low_complexity Low_complexity 1 28 0 19317 174 45 13 chr11 104201327 104207802 -46575751 + L1M1 LINE L1 15 6695 -870 1322 274 89 11 chr11 104207909 104208358 -46575195 - LTR33 LTR ERVL -22 499 16 182 103 0 0 chr11 104208750 104208779 -46574774 + L3 LINE CR1 1548 1576 -1 4024 139 48 3 chr11 104209205 104209867 -46573686 - L1MA5A LINE L1 0 6297 5606 2181 126 3 0 chr11 104209867 104210176 -46573377 - AluSx SINE Alu -2 310 1 333 328 16 24 chr11 104211521 104211646 -46571907 - MIR SINE MIR -68 140 17 207 291 63 97 chr11 104212444 104212650 -46570903 - L2 LINE L2 -237 3035 2837 450 169 225 21 chr11 104214175 104214317 -46569236 - MIR SINE MIR -59 203 33 366 261 9 45 chr11 104214404 104214515 -46569038 + MIR SINE MIR 30 136 -126 347 226 97 11 chr11 104215227 104215320 -46568233 + L2 LINE L2 3170 3270 -2 200 213 32 96 chr11 104216324 104216418 -46567135 + L2 LINE L2 2934 3021 -251 383 261 22 0 chr11 104216630 104216722 -46566831 + L2 LINE L2 3136 3229 -43 742 282 68 20 chr11 104216772 104217020 -46566533 - MIR SINE MIR -1 261 2 331 312 233 0 chr11 104218112 104218314 -46565239 + MIR SINE MIR 1 249 -13 273 266 100 96 chr11 104218424 104218695 -46564858 - L2 LINE L2 -173 3099 2828 229 204 42 156 chr11 104219408 104219575 -46563978 - MER5B DNA MER1_type -30 148 1 394 283 128 22 chr11 104219649 104219829 -46563724 - L2 LINE L2 -6 3307 3109 318 286 77 44 chr11 104219833 104220015 -46563538 + L2 LINE L2 1803 1990 -1324 563 199 53 64 chr11 104220030 104220201 -46563352 - MIR SINE MIR -37 225 57 335 359 19 0 chr11 104220534 104220640 -46562913 - L2 LINE L2 -27 3245 3138 187 347 248 6 chr11 104220651 104220994 -46562559 + L2 LINE L2 2325 2750 -564 234 233 29 78 chr11 104221282 104221385 -46562168 + MLT1K LTR MaLR 424 521 -67 740 246 24 0 chr11 104221388 104221555 -46561998 + MIR SINE MIR 52 222 -40 195 353 90 16 chr11 104221857 104221979 -46561574 + MIR3 SINE MIR 14 144 -64 2644 145 54 5 chr11 104222094 104222500 -46561053 - MSTB LTR MaLR 0 426 1 321 229 83 96 chr11 104223693 104223933 -46559620 - L1MC4a LINE L1 -140 5981 5743 454 307 123 31 chr11 104223939 104225176 -46558377 - L1MC4a LINE L1 -404 5717 4373 493 282 90 5 chr11 104226202 104226390 -46557163 - MIR SINE MIR -40 222 19 185 343 82 14 chr11 104227038 104227184 -46556369 - MIR SINE MIR -78 184 29 355 189 0 21 chr11 104227550 104227645 -46555908 + GA-rich Low_complexity Low_complexity 4 96 0 2450 66 0 3 chr11 104227855 104228156 -46555397 + AluY SINE Alu 1 300 -11 378 298 84 67 chr11 104228448 104228735 -46554818 - L2 LINE L2 -174 3098 2797 471 209 174 9 chr11 104228735 104228850 -46554703 + MER94 DNA DNA 1 134 0 378 298 84 67 chr11 104228850 104228962 -46554591 - L2 LINE L2 -475 2797 2688 386 267 73 52 chr11 104229031 104229263 -46554290 - L2 LINE L2 0 3313 3077 441 296 123 41 chr11 104229737 104230078 -46553475 - L2 LINE L2 -382 2932 2564 382 254 41 17 chr11 104230113 104230258 -46553295 + MLT1J2 LTR MaLR 68 219 -190 250 249 86 0 chr11 104230319 104230418 -46553135 + MLT1I LTR MaLR 317 409 0 285 321 27 33 chr11 104230418 104230602 -46552951 - L2 LINE L2 -735 2579 2397 1491 190 150 53 chr11 104231047 104231529 -46552024 - MLT1F1 LTR MaLR 0 567 38 554 183 9 0 chr11 104231981 104232096 -46551457 + CT-rich Low_complexity Low_complexity 3 118 0 589 340 82 8 chr11 104232146 104232390 -46551163 + MIR SINE MIR 1 262 0 203 282 42 0 chr11 104232544 104232615 -46550938 + CT-rich Low_complexity Low_complexity 5 78 0 2074 109 0 60 chr11 104233005 104233336 -46550217 + AluSx SINE Alu 1 311 -1 1000 258 96 51 chr11 104233937 104234332 -46549221 + LTR16A LTR ERVL 31 443 -7 558 302 47 0 chr11 104234386 104234558 -46548995 - MIR SINE MIR -36 226 47 518 308 50 94 chr11 104235763 104236104 -46547449 - L2 LINE L2 -9 3263 2938 1023 166 90 57 chr11 104236201 104236412 -46547141 - MER20 DNA MER1_type -1 218 1 642 254 89 32 chr11 104236512 104236760 -46546793 - L2 LINE L2 0 3313 3052 335 294 79 97 chr11 104236980 104237259 -46546294 - L2 LINE L2 -43 3229 2956 503 167 21 21 chr11 104237398 104237494 -46546059 + MIR3 SINE MIR 113 208 0 2472 72 0 3 chr11 104239188 104239493 -46544060 + AluY SINE Alu 1 304 -7 270 301 86 38 chr11 104240140 104240349 -46543204 - L2 LINE L2 -250 3022 2804 189 107 0 0 chr11 104240998 104241026 -46542527 + (A)n Simple_repeat Simple_repeat 1 28 0 180 77 0 0 chr11 104241322 104241348 -46542205 + (CA)n Simple_repeat Simple_repeat 1 26 0 467 279 32 32 chr11 104241929 104242083 -46541470 - MIR3 SINE MIR -49 159 6 457 353 105 41 chr11 104242335 104242754 -46540799 + L2 LINE L2 2826 3271 -1 2071 115 13 0 chr11 104243553 104243857 -46539696 - AluSp SINE Alu -5 308 1 464 276 96 0 chr11 104244015 104244171 -46539382 + MIR SINE MIR 2 172 -90 371 219 14 13 chr11 104244171 104244267 -46539286 - MER58B DNA MER1_type -1 340 114 335 346 44 7 chr11 104244936 104245072 -46538481 - L2 LINE L2 -17 3255 3115 185 290 69 48 chr11 104245437 104245582 -46537971 + L2 LINE L2 2829 2976 -296 637 204 61 77 chr11 104245848 104246029 -46537524 + MER5B DNA MER1_type 1 178 0 269 300 44 0 chr11 104246055 104246145 -46537408 + MIR SINE MIR 168 261 -1 249 245 0 0 chr11 104246180 104246233 -46537320 + L2 LINE L2 3261 3313 0 619 206 30 85 chr11 104246333 104246498 -46537055 + MER97b DNA MER1_type? 21 176 -877 21 0 0 0 chr11 104246647 104246668 -46536885 + AT_rich Low_complexity Low_complexity 1 21 0 224 330 176 30 chr11 104247048 104247445 -46536108 + L2 LINE L2 2818 3272 0 272 330 83 0 chr11 104247503 104247612 -46535941 + L2 LINE L2 3191 3308 -5 216 346 12 12 chr11 104247956 104248037 -46535516 + MER5A DNA MER1_type 109 189 0 883 224 69 26 chr11 104248039 104248271 -46535282 + MIR SINE MIR 13 254 -8 291 319 9 9 chr11 104248521 104248637 -46534916 + MIR3 SINE MIR 83 198 -10 307 228 18 114 chr11 104250498 104250612 -46532941 - MIR SINE MIR -112 150 48 635 308 18 0 chr11 104250702 104250871 -46532682 - MIR SINE MIR -71 191 20 779 178 129 0 chr11 104252953 104253116 -46530437 - MER20 DNA MER1_type -1 218 35 195 42 0 0 chr11 104253809 104253833 -46529720 + (TAA)n Simple_repeat Simple_repeat 3 26 0 389 261 59 0 chr11 104253834 104253953 -46529600 - MIR SINE MIR -8 254 129 678 184 14 41 chr11 104253954 104254101 -46529452 - L2 LINE L2 -5 3308 3166 1139 252 111 52 chr11 104255082 104255657 -46527896 - MLT1L LTR MaLR -6 609 1 401 329 67 7 chr11 104256265 104256414 -46527139 - L2 LINE L2 -4 3268 3111 25 31 0 0 chr11 104256585 104256617 -46526936 + AT_rich Low_complexity Low_complexity 1 32 0 665 266 109 41 chr11 104257088 104257426 -46526127 + MLT1L LTR MaLR 253 613 -2 2031 154 86 28 chr11 104258036 104258126 -46525427 - L1MB2 LINE L1 -39 6132 6049 2469 156 97 43 chr11 104258126 104258619 -46524934 + MLT2B1 LTR ERVL 1 520 0 2031 154 86 28 chr11 104258619 104258923 -46524630 - L1MB2 LINE L1 -122 6049 5715 2156 113 57 104 chr11 104259545 104260015 -46523538 + LTR7 LTR ERV1 1 448 -2 10441 106 29 15 chr11 104260017 104262159 -46521394 + HERVH LTR ERV1 1 2111 -5602 198 0 0 0 chr11 104262293 104262315 -46521238 + (A)n Simple_repeat Simple_repeat 1 22 0 1032 247 84 0 chr11 104262571 104262810 -46520743 + MIR SINE MIR 2 260 -2 256 140 60 0 chr11 104263451 104263501 -46520052 - L2 LINE L2 0 3313 3261 536 340 61 25 chr11 104263837 104264231 -46519322 - ERVL LTR ERVL -660 5104 4697 495 298 18 6 chr11 104264249 104264420 -46519133 - LTR16B LTR ERVL -4 460 288 361 250 12 0 chr11 104264675 104264755 -46518798 - L2 LINE L2 -49 3223 3143 542 231 108 42 chr11 104264874 104265086 -46518467 + MIR SINE MIR 9 234 -28 491 351 15 5 chr11 104266110 104266315 -46517238 - MIR SINE MIR -15 247 41 340 361 107 30 chr11 104266363 104266870 -46516683 + L2 LINE L2 2412 2957 -357 186 103 0 0 chr11 104267710 104267739 -46515814 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 190 150 125 0 chr11 104268179 104268219 -46515334 - L2 LINE L2 -18 3295 3251 * 336 224 71 20 chr11 104268188 104268286 -46515267 - MIR SINE MIR -24 238 136 466 318 109 7 chr11 104268350 104268557 -46514996 - MIR SINE MIR -29 233 8 563 271 52 21 chr11 104268931 104269098 -46514455 + L1MDa LINE L1 34 209 -6331 1888 215 39 28 chr11 104269098 104269488 -46514065 - MSTD LTR MaLR -2 394 1 563 271 52 21 chr11 104269488 104269512 -46514041 + L1MDa LINE L1 209 231 -6309 * 2248 241 34 4 chr11 104269502 104269996 -46513557 - MSTD-int LTR MaLR -15 1720 1212 875 180 16 46 chr11 104269992 104270186 -46513367 - MSTD-int LTR MaLR -1546 189 2 * 2358 203 5 0 chr11 104270188 104270582 -46512971 - MSTD LTR MaLR 0 396 1 375 268 12 0 chr11 104270583 104270665 -46512888 + L1MDa LINE L1 197 279 -6261 10124 219 37 35 chr11 104271050 104271510 -46512043 + L1MDa LINE L1 847 1305 -5235 1651 155 0 4 chr11 104271510 104271755 -46511798 + AluSx SINE Alu 6 249 -63 10124 219 37 35 chr11 104271755 104272258 -46511295 + L1MDa LINE L1 1305 1806 -4734 2022 136 0 0 chr11 104272258 104272661 -46510892 + AluSx SINE Alu 1 403 0 10124 219 37 35 chr11 104272661 104275074 -46508479 + L1MDa LINE L1 1806 4209 -2331 231 36 0 0 chr11 104275074 104275102 -46508451 + (GA)n Simple_repeat Simple_repeat 2 29 0 10124 219 37 35 chr11 104275102 104276310 -46507243 + L1MDa LINE L1 4209 5413 -1127 689 183 16 0 chr11 104276313 104276439 -46507114 + L1MD1 LINE L1 6115 6242 0 223 264 28 28 chr11 104276772 104276844 -46506709 - MIR SINE MIR -180 82 11 1647 239 85 55 chr11 104277152 104277754 -46505799 - L1MB7 LINE L1 -9 6175 5556 21 36 0 0 chr11 104277758 104277786 -46505767 + AT_rich Low_complexity Low_complexity 1 28 0 6614 65 21 6 chr11 104277930 104278794 -46504759 - L1PA8 LINE L1 -8 6164 5288 2252 63 0 7 chr11 104278848 104279119 -46504434 - AluY SINE Alu -13 298 30 347 187 0 0 chr11 104279278 104279353 -46504200 - L1MA10 LINE L1 -3 6331 6257 2707 73 2 71 chr11 104279366 104279762 -46503791 - L1PB1 LINE L1 -2 6149 5781 4004 120 9 24 chr11 104279914 104279935 -46503618 - L1PB1 LINE L1 -360 5791 5771 183 80 0 0 chr11 104279935 104279960 -46503593 + (TG)n Simple_repeat Simple_repeat 1 25 0 4004 120 9 24 chr11 104279960 104281116 -46502437 - L1PB1 LINE L1 -380 5771 4625 922 271 152 36 chr11 104281236 104282170 -46501383 + L1ME3A LINE L1 2771 3812 -2334 851 249 135 34 chr11 104282189 104282574 -46500979 - MLT1J1 LTR MaLR -18 428 5 1050 273 94 67 chr11 104282616 104284678 -46498875 + L1ME3A LINE L1 3876 6025 -96 30 0 0 0 chr11 104284812 104284842 -46498711 + AT_rich Low_complexity Low_complexity 1 30 0 211 292 45 11 chr11 104285210 104285299 -46498254 - MIR SINE MIR -90 172 81 324 0 0 0 chr11 104285566 104285602 -46497951 + (CA)n Simple_repeat Simple_repeat 1 36 0 204 40 0 0 chr11 104285989 104286014 -46497539 + (A)n Simple_repeat Simple_repeat 1 25 0 462 289 7 7 chr11 104286028 104286180 -46497373 + L1ME2 LINE L1 6004 6155 -9 21 0 0 0 chr11 104287424 104287445 -46496108 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr11 104287587 104287610 -46495943 + AT_rich Low_complexity Low_complexity 1 23 0 928 158 0 0 chr11 104287958 104288091 -46495462 - FLAM_C SINE Alu 0 133 1 305 292 117 29 chr11 104288170 104288341 -46495212 + MIR SINE MIR 28 213 -49 350 281 7 59 chr11 104288380 104288515 -46495038 + MIR SINE MIR 85 212 -50 189 74 0 0 chr11 104288603 104288630 -46494923 + (A)n Simple_repeat Simple_repeat 1 27 0 195 243 0 0 chr11 104289333 104289370 -46494183 + MIR SINE MIR 195 231 -31 1861 149 7 17 chr11 104289409 104289704 -46493849 - AluJo SINE Alu -20 292 1 405 236 12 141 chr11 104290382 104290510 -46493043 - L2 LINE L2 0 3313 3229 1069 179 46 5 chr11 104290510 104290706 -46492847 - MER3 DNA MER1_type -1 208 5 405 236 12 141 chr11 104290706 104290819 -46492734 - L2 LINE L2 -84 3229 3103 709 226 33 35 chr11 104291169 104291411 -46492142 - L2 LINE L2 -283 3030 2789 1182 222 148 74 chr11 104291453 104291926 -46491627 - MLT1H LTR MaLR -37 512 5 2262 277 85 11 chr11 104291929 104292679 -46490874 - L2 LINE L2 -521 2793 1988 252 239 56 14 chr11 104296841 104296912 -46486641 - LTR33A LTR ERVL -328 195 122 514 308 109 5 chr11 104297565 104297786 -46485767 - MIR SINE MIR -13 249 6 1766 211 27 15 chr11 104298020 104298351 -46485202 - MER21B LTR ERV1 -528 335 1 345 220 20 60 chr11 104298378 104298478 -46485075 - L2 LINE L2 -105 3208 3113 984 274 74 32 chr11 104298490 104298869 -46484684 - LTR16C LTR ERVL 0 491 97 598 333 74 20 chr11 104298994 104299358 -46484195 - L2 LINE L2 -200 3113 2733 262 235 186 39 chr11 104299750 104299852 -46483701 - MIR SINE MIR -78 184 68 203 195 24 0 chr11 104299961 104300002 -46483551 + (CATA)n Simple_repeat Simple_repeat 3 44 0 216 214 31 92 chr11 104300091 104300189 -46483364 - L2 LINE L2 -1288 2026 1935 2355 91 10 0 chr11 104300557 104300855 -46482698 - AluSg SINE Alu -9 301 1 2723 144 33 13 chr11 104301320 104301772 -46481781 - MER65C LTR ERV1 0 461 1 637 233 13 20 chr11 104302923 104303073 -46480480 + MER5A DNA MER1_type 35 183 -6 227 282 42 0 chr11 104303504 104303575 -46479978 - MLT1I LTR MaLR -6 403 330 993 147 0 0 chr11 104303740 104303890 -46479663 - FRAM SINE Alu -3 173 24 278 226 35 55 chr11 104303961 104304104 -46479449 - MLT1J2 LTR MaLR -312 138 1 234 282 13 39 chr11 104304215 104304293 -46479260 + CT-rich Low_complexity Low_complexity 2 77 0 540 307 18 24 chr11 104304539 104304705 -46478848 - MER5A DNA MER1_type -8 181 17 387 291 50 113 chr11 104304860 104305180 -46478373 + L2 LINE L2 2971 3270 -2 1485 88 0 0 chr11 104305300 104305481 -46478072 + AluSc SINE Alu 1 181 -128 243 196 0 0 chr11 104305582 104305628 -46477925 + MER58 DNA MER1_type 2351 2396 -24 356 281 56 38 chr11 104305731 104305891 -46477662 - MIR SINE MIR -42 220 58 1016 267 118 37 chr11 104306689 104307154 -46476399 + LTR33A LTR ERVL 4 506 -17 368 291 23 70 chr11 104307161 104307173 -46476380 - MIR SINE MIR -90 172 161 1665 235 11 21 chr11 104307173 104307551 -46476002 - MLT1A2 LTR MaLR 0 374 1 368 291 23 70 chr11 104307551 104307710 -46475843 - MIR SINE MIR -101 161 9 299 296 9 52 chr11 104307966 104308081 -46475472 - MIR SINE MIR -79 129 20 6941 160 114 40 chr11 104309199 104310666 -46472887 - MER52A LTR ERV1 0 1755 180 332 238 16 0 chr11 104310667 104310730 -46472823 - MER52A LTR ERV1 -1691 64 1 1283 223 57 37 chr11 104311394 104311882 -46471671 + MLT1E LTR MaLR 1 593 0 2110 153 46 0 chr11 104312240 104312566 -46470987 - MER2 DNA MER2_type -3 341 1 236 316 24 93 chr11 104312739 104312986 -46470567 - L2 LINE L2 -192 3080 2851 356 306 96 13 chr11 104313491 104313648 -46469905 + MIR3 SINE MIR 6 175 -33 466 273 38 8 chr11 104314685 104314817 -46468736 + MIR SINE MIR 68 203 -59 202 231 0 0 chr11 104314897 104314936 -46468617 + A-rich Low_complexity Low_complexity 5 43 0 655 291 37 11 chr11 104314954 104315143 -46468410 + MIR SINE MIR 6 199 -63 1264 233 51 13 chr11 104315145 104315458 -46468095 + MLT1J2 LTR MaLR 1 325 -125 343 250 24 32 chr11 104316280 104316404 -46467149 + MIR SINE MIR 140 262 0 542 294 166 16 chr11 104316828 104317243 -46466310 + L2 LINE L2 2657 3134 -179 313 167 45 0 chr11 104317253 104317319 -46466234 - L1MB7 LINE L1 0 6184 6116 1747 180 0 10 chr11 104317322 104317622 -46465931 + AluJb SINE Alu 1 297 -15 937 200 0 0 chr11 104317622 104317777 -46465776 + AluJb SINE Alu 134 288 -24 1465 195 29 57 chr11 104317812 104318197 -46465356 - L1MB7 LINE L1 -78 6106 5733 389 354 88 12 chr11 104318707 104318947 -46464606 - MIR SINE MIR 0 262 5 2165 103 7 24 chr11 104319668 104319983 -46463570 + AluSq SINE Alu 1 310 0 2295 195 49 7 chr11 104320259 104320706 -46462847 - MLT1C LTR MaLR 0 467 2 590 213 125 44 chr11 104321033 104321193 -46462360 + MER69A DNA AcHobo 2 174 -3 257 279 128 35 chr11 104322316 104322402 -46461151 - MIR SINE MIR -30 178 84 203 171 0 0 chr11 104323172 104323207 -46460346 + GA-rich Low_complexity Low_complexity 2 36 0 198 0 0 0 chr11 104323738 104323760 -46459793 + (A)n Simple_repeat Simple_repeat 1 22 0 14918 61 5 6 chr11 104323866 104326143 -46457410 - L1P2 LINE L1 -406 5748 3478 251 161 0 48 chr11 104326267 104326329 -46457224 + GA-rich Low_complexity Low_complexity 3 61 0 263 296 153 0 chr11 104326450 104326548 -46457005 + MIR SINE MIR 32 144 -64 183 129 0 0 chr11 104327202 104327233 -46456320 + (TG)n Simple_repeat Simple_repeat 1 31 0 365 298 142 24 chr11 104327615 104327820 -46455733 + MIR SINE MIR 34 262 0 187 313 15 45 chr11 104328231 104328298 -46455255 - L3 LINE CR1 -14 1563 1499 793 291 38 29 chr11 104328922 104329345 -46454208 + L1MC/D LINE L1 5366 5789 -698 2337 250 83 7 chr11 104329355 104330054 -46453499 + L1ME1 LINE L1 287 1038 -5358 1601 238 15 0 chr11 104330061 104330389 -46453164 + L1ME1 LINE L1 5571 5903 -332 8387 105 259 5 chr11 104330392 104331916 -46451637 + L1PBa LINE L1 232 2141 -4722 1309 203 0 80 chr11 104331911 104332276 -46451277 + L1 LINE L1 4301 4636 -1510 * 184 325 158 0 chr11 104332382 104332496 -46451057 - L2 LINE L2 -1 3312 3181 270 340 237 0 chr11 104333653 104333750 -46449803 + L2 LINE L2 3137 3256 -16 313 294 15 44 chr11 104333948 104334084 -46449469 + MIR SINE MIR 20 151 -111 527 241 35 28 chr11 104334330 104334475 -46449078 + MIR SINE MIR 117 262 0 350 188 129 35 chr11 104335780 104335865 -46447688 - Tigger7 DNA MER2_type 0 2487 2395 * 1241 213 103 4 chr11 104335856 104336109 -46447444 - Tigger7 DNA MER2_type -454 279 2 185 227 23 0 chr11 104336128 104336172 -46447381 + L3b LINE CR1 1190 1234 -349 187 0 0 36 chr11 104336391 104336419 -46447134 + L2 LINE L2 3284 3310 -3 2172 177 42 10 chr11 104336420 104336804 -46446749 + MSTD LTR MaLR 1 396 0 369 93 0 0 chr11 104337432 104337486 -46446067 + (TG)n Simple_repeat Simple_repeat 1 54 0 254 250 54 22 chr11 104337628 104337720 -46445833 - LTR16A1 LTR ERVL 0 457 377 363 371 84 0 chr11 104338123 104338301 -46445252 + L2 LINE L2 2552 2744 -570 384 59 0 0 chr11 104338640 104338691 -46444862 + (TGG)n Simple_repeat Simple_repeat 3 53 0 404 227 23 0 chr11 104339098 104339186 -46444367 + L2 LINE L2 3193 3282 -31 537 222 52 46 chr11 104339870 104340023 -46443530 + MER63A DNA MER1_type 57 210 0 289 324 59 29 chr11 104340040 104340210 -46443343 - MIR SINE MIR -75 187 13 358 239 109 11 chr11 104340332 104340424 -46443129 + MER58 DNA MER1_type 1 101 -114 43929 29 21 1 chr11 104340425 104346444 -46437109 + L1HS LINE L1 2 6145 -10 18278 42 5 1 chr11 104346544 104348940 -46434613 - L1P2 LINE L1 -592 5562 3155 2784 239 49 57 chr11 104348909 104349635 -46433918 - L1M4 LINE L1 -823 5323 4606 * 704 110 100 0 chr11 104349635 104349735 -46433818 - HY1 scRNA scRNA -2 110 1 2784 239 49 57 chr11 104349735 104350053 -46433500 - L1M4 LINE L1 -1540 4606 4287 234 109 36 55 chr11 104350354 104350409 -46433144 + LTR16B LTR ERVL 223 276 -188 17908 126 30 16 chr11 104350457 104353152 -46430401 - Tigger4(Zombi) DNA MER2_type 0 2731 1 2710 58 9 0 chr11 104353301 104353630 -46429923 + L1PA6 LINE L1 5821 6152 -2 263 327 188 14 chr11 104354580 104354803 -46428750 + MIR SINE MIR 1 262 0 185 261 87 43 chr11 104354799 104354868 -46428685 - L2 LINE L2 -50 3263 3192 * 342 253 22 22 chr11 104355272 104355363 -46428190 - MLT1K LTR MaLR -347 241 151 219 254 0 36 chr11 104356638 104356693 -46426860 + polypurine Low_complexity Low_complexity 2 54 0 459 142 0 0 chr11 104356769 104356875 -46426678 + (GA)n Simple_repeat Simple_repeat 2 107 0 2744 170 22 0 chr11 104357622 104358069 -46425484 + LTR32 LTR ERVL 15 471 0 245 250 62 0 chr11 104358653 104358717 -46424836 + L2 LINE L2 3153 3220 -52 690 105 0 0 chr11 104358747 104358852 -46424701 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 5107 28 3 11 chr11 104359310 104359883 -46423670 + SVA Other Other 818 1386 0 195 184 0 0 chr11 104361171 104361209 -46422344 + T-rich Low_complexity Low_complexity 1 38 0 491 252 82 0 chr11 104361278 104361437 -46422116 - MIR SINE MIR -1 261 90 305 248 79 10 chr11 104361473 104361574 -46421979 + MIR SINE MIR 40 147 -115 2187 64 67 0 chr11 104361823 104362105 -46421448 + AluY SINE Alu 1 301 -10 2073 115 60 104 chr11 104362304 104362773 -46420780 - LTR7 LTR ERV1 -2 448 1 29812 72 4 3 chr11 104362773 104367054 -46416499 - HERVH LTR ERV1 0 7713 3492 885 142 20 0 chr11 104367044 104367192 -46416361 - HERVH LTR ERV1 -4423 3290 3140 * 3173 106 0 11 chr11 104367177 104367648 -46415905 - HERVH LTR ERV1 -4718 2995 2530 703 168 168 0 chr11 104368427 104368570 -46414983 - MER46B DNA MER2_type -194 42 1 289 182 18 0 chr11 104368523 104368578 -46414975 + MER46A DNA MER2_type 97 152 -84 * 377 246 16 63 chr11 104368578 104368704 -46414849 - MIR SINE MIR -96 166 47 310 206 27 55 chr11 104368999 104369072 -46414481 - L2 LINE L2 -54 3218 3148 865 325 149 63 chr11 104369793 104370904 -46412649 + L2 LINE L2 141 1347 -1967 252 0 0 0 chr11 104371019 104371047 -46412506 + (A)n Simple_repeat Simple_repeat 1 28 0 1503 197 7 17 chr11 104371060 104371355 -46412198 + AluJo SINE Alu 3 294 -18 474 308 87 44 chr11 104371857 104372178 -46411375 + HAL1 LINE L1 496 830 -1677 752 205 103 43 chr11 104372182 104372416 -46411137 + L1M4 LINE L1 4860 5107 -1039 836 88 15 88 chr11 104372485 104372622 -46410931 + Tigger5 DNA MER2_type 2197 2323 0 1543 311 75 37 chr11 104372623 104373615 -46409938 - L2 LINE L2 -116 3197 2161 495 88 135 188 chr11 104373615 104373807 -46409746 - MER33 DNA MER1_type -2 361 180 886 196 0 0 chr11 104373811 104373969 -46409584 - FRAM SINE Alu -18 158 1 347 168 271 9 chr11 104373970 104374077 -46409476 - MER33 DNA MER1_type -181 143 9 229 328 48 32 chr11 104374077 104374202 -46409351 - L2 LINE L2 -1535 1779 1653 832 211 88 123 chr11 104374317 104374724 -46408829 - MSTD LTR MaLR 0 396 4 22 0 0 0 chr11 104375193 104375215 -46408338 + AT_rich Low_complexity Low_complexity 1 22 0 235 275 50 33 chr11 104425333 104425453 -46358100 + L1ME4a LINE L1 4046 4167 -1979 1058 308 71 27 chr11 104425545 104426515 -46357038 + L1ME4a LINE L1 4315 5327 -819 417 294 15 25 chr11 104426529 104426733 -46356820 + L1ME4a LINE L1 5372 5573 -597 237 256 64 0 chr11 104426796 104426874 -46356679 + L1ME4a LINE L1 5746 5828 -334 1671 162 52 17 chr11 104426970 104427404 -46356149 - LTR45B LTR ERV1 0 783 3 1827 199 65 0 chr11 104427746 104428155 -46355398 + L1MC3 LINE L1 6256 6358 -1 225 294 161 11 chr11 104428131 104428311 -46355242 + L1ME4a LINE L1 5873 6079 -42 * 228 315 250 0 chr11 104428445 104428537 -46355016 - MER5A DNA MER1_type -32 157 43 193 313 31 16 chr11 104428482 104428546 -46355007 + MER5B DNA MER1_type 92 156 -22 * 181 341 106 0 chr11 104428757 104428842 -46354711 + L2 LINE L2 3220 3313 0 794 179 132 32 chr11 104429161 104429351 -46354202 - MER3 DNA MER1_type 0 209 1 298 185 136 12 chr11 104429517 104429598 -46353955 + MER20 DNA MER1_type 1 91 -128 310 119 15 15 chr11 104429600 104429667 -46353886 + (TG)n Simple_repeat Simple_repeat 2 68 0 597 158 26 53 chr11 104429695 104429809 -46353744 + MER20 DNA MER1_type 109 219 0 275 349 60 40 chr11 104429983 104430132 -46353421 + L2 LINE L2 3090 3241 -31 1963 146 23 23 chr11 104431948 104432291 -46351262 + MER61A LTR ERV1 1 343 0 741 280 210 31 chr11 104432318 104432658 -46350895 + MLT1E LTR MaLR 1 279 -314 222 37 0 0 chr11 104432658 104432685 -46350868 + (CCA)n Simple_repeat Simple_repeat 2 28 0 741 280 210 31 chr11 104432685 104432834 -46350719 + MLT1E LTR MaLR 279 578 -15 2921 76 95 0 chr11 104433597 104434006 -46349547 + LTR7 LTR ERV1 1 448 -2 20653 86 21 25 chr11 104434008 104437005 -46346548 + HERVH LTR ERV1 1 2987 -4726 926 135 20 0 chr11 104436999 104437147 -46346406 + HERVH LTR ERV1 3140 3290 -4423 * 3421 112 6 6 chr11 104437137 104437639 -46345914 + HERVH LTR ERV1 3492 3993 -3720 4492 139 0 1 chr11 104437641 104438304 -46345249 + HERVH LTR ERV1 4488 5149 -2564 1428 111 23 9 chr11 104438305 104438522 -46345031 + HERVH LTR ERV1 5600 5819 -1894 2363 104 50 13 chr11 104438522 104438898 -46344655 + HERVH LTR ERV1 7324 7713 0 2976 68 95 0 chr11 104438898 104439307 -46344246 + LTR7 LTR ERV1 1 448 -2 561 226 7 23 chr11 104439309 104439446 -46344107 - MIR SINE MIR -67 141 20 * 647 338 70 39 chr11 104439442 104440133 -46343420 - L2 LINE L2 0 3272 2550 294 335 130 23 chr11 104440760 104440975 -46342578 + MIR SINE MIR 14 251 -11 2130 109 0 0 chr11 104441584 104441900 -46341653 + AluSx SINE Alu 1 316 0 440 97 72 267 chr11 104442001 104442196 -46341357 + MER51B LTR ERV1 1 157 -220 1706 160 43 10 chr11 104442198 104442498 -46341055 + MER51B LTR ERV1 68 377 0 1234 163 41 56 chr11 104442500 104442770 -46340783 + HUERS-P3 LTR ERV1 1 266 -7550 1172 246 63 82 chr11 104442800 104443370 -46340183 + HUERS-P3 LTR ERV1 251 809 -7007 504 300 21 19 chr11 104443482 104443788 -46339765 + HUERS-P3 LTR ERV1 683 1502 -3885 263 344 9 3 chr11 104444031 104444202 -46339351 + HUERS-P3 LTR ERV1 1698 2201 -1058 377 267 55 57 chr11 104444401 104444760 -46338793 + MER51A-int LTR ERV1 1466 1680 -4849 3296 305 62 55 chr11 104445477 104448564 -46334989 + MER51A-int LTR ERV1 2779 6268 -1086 1916 166 41 0 chr11 104448710 104449029 -46334524 + MER51A-int LTR ERV1 7484 7815 -1 497 172 49 28 chr11 104449031 104449164 -46334389 + MER51A LTR ERV1 1 138 -239 245 128 0 21 chr11 104449176 104449223 -46334330 + MER51B LTR ERV1 109 154 -223 1697 162 50 10 chr11 104449223 104449526 -46334027 + MER51B LTR ERV1 63 377 0 204 357 35 76 chr11 104451797 104452139 -46331414 + L2 LINE L2 2645 2972 -342 439 279 77 14 chr11 104452557 104452724 -46330829 - MIR SINE MIR -51 157 39 2260 243 113 43 chr11 104453042 104453803 -46329750 + L2 LINE L2 2002 2815 -499 321 224 201 22 chr11 104453825 104453959 -46329594 + L2 LINE L2 3143 3300 -13 273 214 71 60 chr11 104454659 104454743 -46328810 + MIR SINE MIR 122 206 -56 253 57 0 0 chr11 104454968 104455003 -46328550 + L1PB3 LINE L1 6115 6149 -5 21 36 0 0 chr11 104455016 104455044 -46328509 + AT_rich Low_complexity Low_complexity 1 28 0 1611 188 47 94 chr11 104455198 104455687 -46327866 + MLT1C LTR MaLR 2 467 0 35 54 0 0 chr11 104456012 104456068 -46327485 + AT_rich Low_complexity Low_complexity 1 56 0 640 257 17 39 chr11 104456158 104456337 -46327216 - MER5B DNA MER1_type 0 178 4 408 171 26 0 chr11 104456342 104456418 -46327135 - MIR3 SINE MIR -50 158 81 266 289 99 81 chr11 104456409 104456682 -46326871 + L2 LINE L2 2901 3178 -94 * 296 211 74 11 chr11 104456856 104456951 -46326602 - L1ME4a LINE L1 -6 6115 6015 220 200 60 0 chr11 104457092 104457142 -46326411 - MIR SINE MIR -60 202 150 424 262 58 0 chr11 104457338 104457441 -46326112 + MER91C DNA MER1_type 1 109 -31 346 222 118 59 chr11 104458064 104458199 -46325354 - MIR SINE MIR -2 260 118 523 335 137 0 chr11 104458717 104458929 -46324624 + L2 LINE L2 2509 2749 -565 1090 208 39 0 chr11 104458935 104459142 -46324411 + MER58A DNA MER1_type 9 223 -1 1686 184 79 12 chr11 104459275 104459617 -46323936 + MLT1A1 LTR MaLR 1 365 0 251 274 60 34 chr11 104460804 104460921 -46322632 + MIR3 SINE MIR 66 185 -23 552 188 87 7 chr11 104461512 104461650 -46321903 - MIR3 SINE MIR -22 186 38 341 342 50 0 chr11 104461729 104461849 -46321704 - L2 LINE L2 -8 3264 3139 353 330 61 0 chr11 104461971 104462086 -46321467 + L2 LINE L2 3147 3268 -4 214 302 32 0 chr11 104462111 104462174 -46321379 + MIR SINE MIR 85 149 -113 302 289 0 70 chr11 104462230 104462344 -46321209 - L1MC4 LINE L1 -1328 6714 6609 27 29 0 0 chr11 104462359 104462393 -46321160 + AT_rich Low_complexity Low_complexity 1 34 0 2167 112 133 16 chr11 104462486 104462869 -46320684 + MSTA LTR MaLR 1 428 0 341 274 99 76 chr11 104463167 104463390 -46320163 + L1MEd LINE L1 601 828 -5291 8135 168 137 21 chr11 104463405 104464978 -46318575 + MER52A LTR ERV1 1 1755 0 234 270 54 0 chr11 104464980 104465054 -46318499 + MIR SINE MIR 183 260 -2 355 271 93 8 chr11 104465433 104465551 -46318002 - MIR SINE MIR -62 146 19 367 295 51 59 chr11 104466566 104466753 -46316800 + MIR SINE MIR 30 214 -48 194 274 0 0 chr11 104467222 104467273 -46316280 + L2 LINE L2 3262 3312 -1 250 306 61 10 chr11 104467438 104467536 -46316017 - L2 LINE L2 -1 3312 3210 186 393 71 0 chr11 104467972 104468056 -46315497 + L2 LINE L2 3097 3186 -86 226 316 207 34 chr11 104468383 104468456 -46315097 + L2 LINE L2 2428 2487 -827 4689 150 40 3 chr11 104468456 104469211 -46314342 - LTR39 LTR ERV1 0 783 1 226 316 207 34 chr11 104469211 104469374 -46314179 + L2 LINE L2 2487 2705 -609 259 191 132 0 chr11 104469483 104469551 -46314002 + L2 LINE L2 3235 3311 -2 773 247 0 0 chr11 104469809 104469967 -46313586 + MER5B DNA MER1_type 7 164 -14 2419 73 0 10 chr11 104470543 104470857 -46312696 + AluY SINE Alu 1 311 0 437 286 23 17 chr11 104470924 104471099 -46312454 + MER5B DNA MER1_type 3 178 0 444 296 7 13 chr11 104471206 104471358 -46312195 + MIR SINE MIR 46 196 -66 202 318 95 40 chr11 104472502 104472628 -46310925 + MIR3 SINE MIR 6 138 -70 565 283 209 26 chr11 104472663 104473084 -46310469 - L2 LINE L2 -4 3309 2812 1828 172 59 42 chr11 104473866 104474273 -46309280 + MLT1C LTR MaLR 1 414 -53 13713 183 30 17 chr11 104474275 104475875 -46307678 - L1MA7 LINE L1 0 6527 4950 190 56 56 0 chr11 104475875 104475911 -46307642 + (TTG)n Simple_repeat Simple_repeat 2 39 0 13713 183 30 17 chr11 104475911 104476519 -46307034 - L1MA7 LINE L1 -1577 4950 4352 2246 104 0 3 chr11 104476519 104476817 -46306736 - AluSp SINE Alu -16 297 1 13713 183 30 17 chr11 104476817 104478617 -46304936 - L1MA7 LINE L1 -2175 4352 2463 604 212 63 37 chr11 104478722 104478991 -46304562 - L1MA7 LINE L1 -3906 2476 2201 1253 144 0 0 chr11 104478993 104479221 -46304332 - AluSx SINE Alu 0 356 129 2188 104 0 3 chr11 104479257 104479545 -46304008 - AluSg SINE Alu -23 287 1 968 97 0 0 chr11 104479545 104479669 -46303884 - AluSx SINE Alu -176 136 13 1746 277 36 8 chr11 104479673 104480443 -46303110 - L1MA7 LINE L1 -4175 2207 1328 569 215 0 0 chr11 104480504 104480611 -46302942 - FLAM_C SINE Alu -36 107 1 1956 231 51 53 chr11 104480613 104480813 -46302740 - L1M3c LINE L1 -4567 1398 1199 2349 84 0 3 chr11 104480813 104481109 -46302444 - AluY SINE Alu -16 295 1 1956 231 51 53 chr11 104481109 104481320 -46302233 - L1M3c LINE L1 -4766 1199 989 1922 166 13 0 chr11 104481320 104481622 -46301931 - AluJo SINE Alu -6 306 1 1956 231 51 53 chr11 104481622 104482126 -46301427 - L1M3c LINE L1 -4976 989 448 550 246 0 0 chr11 104482164 104482282 -46301271 - L1M3c LINE L1 -5834 121 4 516 111 0 0 chr11 104482293 104482365 -46301188 + MLT1B LTR MaLR 319 390 0 2478 64 0 0 chr11 104483612 104483909 -46299644 - AluY SINE Alu -14 297 1 2306 104 0 3 chr11 104484646 104484954 -46298599 + AluSg SINE Alu 1 307 -3 2472 74 0 0 chr11 104485108 104485405 -46298148 + AluY SINE Alu 1 297 -14 608 246 137 39 chr11 104485661 104485942 -46297611 - MER93a LTR ERV1 0 402 77 2104 175 43 21 chr11 104485942 104486365 -46297188 - Tigger2a DNA MER2_type -2 432 1 608 246 137 39 chr11 104486365 104486441 -46297112 - MER93a LTR ERV1 -325 77 10 329 240 117 61 chr11 104486594 104486698 -46296855 + L1M4 LINE L1 2184 2281 -3865 1227 229 13 0 chr11 104486698 104486934 -46296619 - MER8 DNA MER2_type 0 239 1 329 240 117 61 chr11 104486934 104487241 -46296312 + L1M4 LINE L1 2281 2618 -3528 473 256 110 66 chr11 104487324 104487641 -46295912 + L1M4 LINE L1 2880 3210 -2936 391 229 129 18 chr11 104487645 104487815 -46295738 - L1MC5 LINE L1 -26 7935 7747 22 0 0 0 chr11 104487972 104487994 -46295559 + AT_rich Low_complexity Low_complexity 1 22 0 489 226 221 60 chr11 104488061 104488260 -46295293 + MIR SINE MIR 5 235 -27 786 291 42 39 chr11 104488300 104488846 -46294707 + L1M4 LINE L1 3476 4023 -2123 25 0 0 0 chr11 104488846 104488871 -46294682 + AT_rich Low_complexity Low_complexity 1 25 0 2851 16 0 0 chr11 104488899 104489213 -46294340 + AluYb8 SINE Alu 1 314 -4 556 296 58 101 chr11 104489449 104489847 -46293706 - L2 LINE L2 -1 3271 2891 275 348 129 0 chr11 104490093 104490271 -46293282 - L2 LINE L2 -685 2629 2429 337 254 8 82 chr11 104491302 104491424 -46292129 - MIR SINE MIR -50 212 100 295 333 30 54 chr11 104492295 104492463 -46291090 + MIR SINE MIR 49 212 -50 211 227 0 57 chr11 104492789 104492877 -46290676 - MIR3 SINE MIR -121 87 5 790 232 30 20 chr11 104493727 104493925 -46289628 + L1ME2 LINE L1 31 230 -5840 1850 253 51 69 chr11 104493959 104495744 -46287809 + L1ME2 LINE L1 513 2267 -3813 1260 98 6 12 chr11 104495744 104495917 -46287636 + AluSg/x SINE Alu 134 305 -7 643 343 62 55 chr11 104496065 104496188 -46287365 - HAL1b LINE L1 -689 1733 1612 2318 90 0 17 chr11 104496188 104496489 -46287064 + AluY SINE Alu 3 298 -13 643 343 62 55 chr11 104496489 104496928 -46286625 - HAL1b LINE L1 -810 1612 93 321 231 111 60 chr11 104496939 104497056 -46286497 - L1ME LINE L1 -5108 962 840 21 0 0 0 chr11 104497304 104497325 -46286228 + AT_rich Low_complexity Low_complexity 1 21 0 305 91 0 0 chr11 104497640 104497684 -46285869 + THE1C LTR MaLR 1 44 -331 1186 214 23 3 chr11 104497810 104498114 -46285439 + L1ME2 LINE L1 2249 2558 -3522 1449 196 68 105 chr11 104498114 104498497 -46285056 + MLT1C LTR MaLR 1 364 -103 3391 128 12 45 chr11 104498497 104499073 -46284480 - MER41D LTR ERV1 0 557 1 1449 196 68 105 chr11 104499073 104499174 -46284379 + MLT1C LTR MaLR 364 467 0 1868 209 156 10 chr11 104499176 104499765 -46283788 + L1ME2 LINE L1 2556 3230 -2850 * 2307 257 52 27 chr11 104499756 104500089 -46283464 + L1ME2 LINE L1 3746 4069 -2011 2288 110 0 0 chr11 104500089 104500389 -46283164 + AluSc SINE Alu 2 301 -8 2307 257 52 27 chr11 104500389 104500938 -46282615 + L1ME2 LINE L1 4069 4650 -1430 1683 140 122 21 chr11 104500938 104501273 -46282280 - MSTA LTR MaLR 0 428 60 3241 229 65 29 chr11 104501291 104501810 -46281743 + L1ME2 LINE L1 4649 5148 -950 1828 193 0 0 chr11 104501810 104502106 -46281447 + AluJb SINE Alu 1 296 -16 3241 229 65 29 chr11 104502106 104502981 -46280572 + L1ME2 LINE L1 5148 6089 -9 330 217 44 128 chr11 104503020 104503246 -46280307 + L1MC4 LINE L1 7828 8034 -8 257 417 0 0 chr11 104503595 104503691 -46279862 - L2 LINE L2 -20 3252 3157 333 0 0 0 chr11 104505635 104505672 -46277881 + (TC)n Simple_repeat Simple_repeat 2 38 0 306 0 0 0 chr11 104505671 104505705 -46277848 + (TG)n Simple_repeat Simple_repeat 1 34 0 * 455 341 128 18 chr11 104506033 104506417 -46277136 + L2 LINE L2 2282 2707 -607 372 316 16 21 chr11 104506426 104506613 -46276940 + L2 LINE L2 2485 2670 -644 434 339 55 6 chr11 104506818 104507001 -46276552 + MIR SINE MIR 27 218 -44 274 152 0 0 chr11 104507490 104507536 -46276017 - L2 LINE L2 0 3313 3268 1033 263 98 53 chr11 104507549 104507753 -46275800 + MLT1H1 LTR MaLR 23 216 -339 863 196 116 11 chr11 104507753 104507942 -46275611 + MER63A DNA MER1_type 2 210 0 1033 263 98 53 chr11 104507942 104508247 -46275306 + MLT1H1 LTR MaLR 216 555 0 744 271 36 14 chr11 104508734 104508955 -46274598 + MIR SINE MIR 6 231 -31 229 258 0 0 chr11 104509657 104509719 -46273834 + Charlie2 DNA MER1_type 2558 2619 -243 4041 183 78 21 chr11 104509762 104509886 -46273667 - L1MD2 LINE L1 -83 6276 6160 201 39 0 0 chr11 104509886 104509912 -46273641 + (TG)n Simple_repeat Simple_repeat 1 26 0 4041 183 78 21 chr11 104509912 104510689 -46272864 - L1MD2 LINE L1 -199 6160 5324 1700 194 56 0 chr11 104510696 104511072 -46272481 + L1MD2 LINE L1 4918 5314 -832 7592 238 31 44 chr11 104511072 104513733 -46269820 - L1M LINE L1 -841 5305 2701 893 168 0 26 chr11 104513736 104513891 -46269662 - AluJo SINE Alu -161 151 1 2827 206 55 38 chr11 104513897 104515102 -46268451 - L1MDb LINE L1 -4501 2039 861 909 280 26 16 chr11 104515426 104515733 -46267820 - L1MDb LINE L1 -6197 343 34 298 185 88 23 chr11 104516301 104516462 -46267091 + L1P5 LINE L1 5317 5442 -714 23 0 0 0 chr11 104516469 104516492 -46267061 + AT_rich Low_complexity Low_complexity 1 23 0 399 303 111 42 chr11 104516627 104517151 -46266402 - L1MC4a LINE L1 -1876 5932 5373 532 319 77 60 chr11 104517248 104517807 -46265746 - L1MC4a LINE L1 -883 5263 4677 506 229 0 88 chr11 104517807 104517977 -46265576 + L1PB4 LINE L1 6000 6154 -2 198 0 0 0 chr11 104518029 104518051 -46265502 + (TG)n Simple_repeat Simple_repeat 1 22 0 694 243 6 22 chr11 104518305 104518486 -46265067 - MER5B DNA MER1_type 0 178 1 1218 152 36 59 chr11 104519627 104519864 -46263689 + MER33 DNA MER1_type 29 259 -2326 1545 231 21 19 chr11 104519864 104520237 -46263316 + MLT1A2 LTR MaLR 1 374 0 1218 152 36 59 chr11 104520237 104520302 -46263251 + MER33 DNA MER1_type 259 324 0 568 303 46 12 chr11 104520878 104521119 -46262434 - MIR SINE MIR -12 250 2 180 375 34 11 chr11 104521326 104521414 -46262139 - MIR SINE MIR -78 130 41 233 225 50 12 chr11 104521585 104521665 -46261888 - L2 LINE L2 -2 3270 3188 494 273 103 0 chr11 104522854 104523019 -46260534 + L3 LINE CR1 1391 1572 -5 289 313 55 8 chr11 104523098 104523226 -46260327 + L2 LINE L2 3180 3313 0 223 314 122 0 chr11 104523904 104524076 -46259477 - L2 LINE L2 0 3313 3121 509 352 109 0 chr11 104524275 104524622 -46258931 - L2 LINE L2 -509 2805 2421 188 195 0 0 chr11 104524822 104524863 -46258690 - L2 LINE L2 0 3313 3273 318 294 111 8 chr11 104526075 104526201 -46257352 - MIR3 SINE MIR -68 140 2 329 265 143 5 chr11 104526903 104527092 -46256461 - L1ME4a LINE L1 -3 6118 5904 226 222 0 0 chr11 104527156 104527201 -46256352 + L2 LINE L2 3266 3310 -3 328 306 129 8 chr11 104527641 104527801 -46255752 + MIR SINE MIR 4 183 -79 256 160 20 0 chr11 104528262 104528312 -46255241 - L2 LINE L2 0 3313 3263 213 39 0 0 chr11 104529145 104529171 -46254382 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 181 157 0 137 chr11 104529407 104529458 -46254095 - MIR3 SINE MIR -5 203 160 382 333 113 44 chr11 104530060 104530264 -46253289 - MIR SINE MIR -12 250 33 352 296 156 11 chr11 104531467 104531653 -46251900 - MIR SINE MIR -29 233 21 23 0 0 0 chr11 104532496 104532519 -46251034 + AT_rich Low_complexity Low_complexity 1 23 0 32 57 0 0 chr11 104534321 104534374 -46249179 + AT_rich Low_complexity Low_complexity 1 53 0 2167 119 0 0 chr11 104534740 104535026 -46248527 - AluSx SINE Alu -26 286 1 223 358 9 0 chr11 104535030 104535139 -46248414 - MIR SINE MIR -6 256 147 278 308 0 0 chr11 104535345 104535423 -46248130 + L2 LINE L2 3191 3268 -4 435 268 147 5 chr11 104535894 104536092 -46247461 - MIR SINE MIR 0 262 37 723 311 73 3 chr11 104536236 104536551 -46247002 - L2 LINE L2 -1372 1942 1606 1547 286 109 16 chr11 104536618 104536735 -46246818 - L2 LINE L2 -2007 1307 1202 2199 125 0 0 chr11 104536735 104537031 -46246522 - AluSx SINE Alu -16 296 1 1547 286 109 16 chr11 104537031 104537608 -46245945 - L2 LINE L2 -2112 1202 548 593 263 19 6 chr11 104537609 104537765 -46245788 - L2 LINE L2 -2933 381 224 28 48 0 0 chr11 104538975 104539017 -46244536 + GC_rich Low_complexity Low_complexity 1 42 0 26 50 0 0 chr11 104539103 104539143 -46244410 + GC_rich Low_complexity Low_complexity 1 40 0 417 109 0 0 chr11 104539675 104539739 -46243814 + (TG)n Simple_repeat Simple_repeat 2 65 0 2263 143 14 11 chr11 104541153 104541517 -46242036 - MLT1A1 LTR MaLR 0 365 1 365 304 113 12 chr11 104541556 104541724 -46241829 + MIR3 SINE MIR 1 185 -23 2129 246 61 36 chr11 104542105 104542122 -46241431 - MER21B LTR ERV1 -30 833 818 2187 118 0 13 chr11 104542122 104542437 -46241116 - AluSx SINE Alu -1 311 1 2129 246 61 36 chr11 104542437 104543029 -46240524 - MER21B LTR ERV1 -45 818 209 310 243 0 0 chr11 104543284 104543358 -46240195 + MIR SINE MIR 188 261 -1 246 149 21 0 chr11 104543364 104543411 -46240142 - HsTC2 DNA Tc2 -1850 48 1 23 33 0 0 chr11 104543411 104543441 -46240112 + AT_rich Low_complexity Low_complexity 1 30 0 1418 58 11 153 chr11 104543539 104543800 -46239753 - L1PA6 LINE L1 -6 6148 5925 334 239 56 0 chr11 104543813 104543884 -46239669 - MER21B LTR ERV1 -691 172 98 497 197 0 0 chr11 104543939 104544015 -46239538 - MER21B LTR ERV1 -773 90 15 189 280 0 0 chr11 104544083 104544133 -46239420 + MIR SINE MIR 84 133 -129 24 53 0 0 chr11 104544216 104544254 -46239299 + AT_rich Low_complexity Low_complexity 1 38 0 527 184 20 144 chr11 104545110 104545311 -46238242 + MER5B DNA MER1_type 3 178 0 329 296 11 0 chr11 104545317 104545405 -46238148 + L2 LINE L2 3178 3266 -6 659 282 125 25 chr11 104546104 104546501 -46237052 - MLT1J2 LTR MaLR -4 413 15 565 255 103 25 chr11 104546582 104546923 -46236630 - MLT1J LTR MaLR -1 510 110 410 267 61 0 chr11 104547027 104547158 -46236395 + MIR SINE MIR 3 141 -121 645 292 139 9 chr11 104547165 104547381 -46236172 + LTR33 LTR ERVL 10 253 -268 3263 150 12 36 chr11 104547464 104548023 -46235530 - MLT2B3 LTR ERVL -8 546 1 825 206 56 0 chr11 104548023 104548182 -46235371 + LTR33 LTR ERVL 354 521 0 238 232 179 0 chr11 104548182 104548277 -46235276 + MIR SINE MIR 140 251 -11 486 293 55 6 chr11 104549363 104549527 -46234026 - MIR SINE MIR -65 197 26 28 0 0 0 chr11 104549693 104549721 -46233832 + AT_rich Low_complexity Low_complexity 1 28 0 326 78 0 20 chr11 104550247 104550298 -46233255 + (CA)n Simple_repeat Simple_repeat 1 50 0 274 294 22 0 chr11 104550626 104550718 -46232835 + CT-rich Low_complexity Low_complexity 2 95 0 269 330 11 0 chr11 104551662 104551756 -46231797 + MIR SINE MIR 158 252 -10 598 301 105 4 chr11 104551950 104552179 -46231374 - MIR SINE MIR 0 262 11 269 346 45 30 chr11 104552306 104552439 -46231114 - L2 LINE L2 -30 3242 3108 * 671 239 14 36 chr11 104552435 104552651 -46230902 + MIR SINE MIR 51 261 -1 671 109 83 119 chr11 104553221 104553414 -46230139 + MER53 DNA DNA 4 189 0 350 272 11 98 chr11 104553880 104554064 -46229489 - L3 LINE CR1 -103 1474 1307 718 201 48 52 chr11 104554064 104554085 -46229468 + MER112 DNA MER1_type 6 26 -234 4025 139 62 43 chr11 104554085 104554855 -46228698 - LTR1 LTR ERV1 0 785 1 718 201 48 52 chr11 104554855 104555082 -46228471 + MER112 DNA MER1_type 26 253 -7 379 377 112 15 chr11 104555107 104555375 -46228178 - L3 LINE CR1 -274 1303 1010 624 298 29 16 chr11 104555697 104555939 -46227614 - MIR SINE MIR 0 262 18 2107 125 0 0 chr11 104556267 104556548 -46227005 + AluSx SINE Alu 16 296 -16 387 267 37 37 chr11 104558059 104558194 -46225359 + MIR SINE MIR 20 154 -108 1133 156 16 0 chr11 104558381 104558567 -46224986 + MER5A DNA MER1_type 1 189 0 395 329 31 0 chr11 104558934 104559095 -46224458 + L2 LINE L2 2885 3050 -222 460 141 0 87 chr11 104559293 104559385 -46224168 - AluJo SINE Alu -18 294 211 888 155 0 68 chr11 104559385 104559546 -46224007 - AluJo SINE Alu -162 150 1 2332 112 0 0 chr11 104559649 104559961 -46223592 - AluSx SINE Alu 0 312 1 1148 135 82 29 chr11 104560795 104561003 -46222550 + MER20 DNA MER1_type 1 219 0 251 196 0 0 chr11 104561439 104561485 -46222068 + L2 LINE L2 3257 3302 -11 2542 121 75 29 chr11 104561941 104562355 -46221198 - Tigger2a DNA MER2_type -1 433 1 372 237 97 0 chr11 104563307 104563400 -46220153 - MIR SINE MIR -44 218 117 613 313 74 4 chr11 104564735 104564965 -46218588 - MIR SINE MIR 0 262 17 347 309 33 13 chr11 104565203 104565355 -46218198 + MIR3 SINE MIR 54 208 0 24 77 0 0 chr11 104566784 104566836 -46216717 + GC_rich Low_complexity Low_complexity 1 52 0 24 0 0 0 chr11 104567363 104567387 -46216166 + GC_rich Low_complexity Low_complexity 1 24 0 5491 191 26 18 chr11 104570495 104571851 -46211702 - L1MD2 LINE L1 -4 6355 4992 490 263 171 0 chr11 104572396 104572571 -46210982 + MIR SINE MIR 58 262 0 925 237 0 16 chr11 104573045 104573235 -46210318 - MER5A DNA MER1_type 0 189 3 187 298 0 36 chr11 104573507 104573591 -46209962 + MIR SINE MIR 132 212 -50 214 324 73 0 chr11 104573750 104573818 -46209735 + L3 LINE CR1 1482 1554 -23 255 211 58 0 chr11 104574013 104574025 -46209528 + MER3 DNA MER1_type 36 50 -159 676 153 76 0 chr11 104574025 104574143 -46209410 - MER3 DNA MER1_type 0 209 83 244 322 47 57 chr11 104574731 104574942 -46208611 + L2 LINE L2 2466 2674 -640 203 200 22 0 chr11 104574943 104574988 -46208565 + CT-rich Low_complexity Low_complexity 2 47 0 243 226 81 0 chr11 104576381 104576443 -46207110 - L2 LINE L2 -5 3267 3201 210 239 99 14 chr11 104576510 104576581 -46206972 + L3b LINE CR1 1183 1259 -324 672 286 108 9 chr11 104576868 104577099 -46206454 + MIR SINE MIR 8 261 -1 1607 245 128 26 chr11 104577122 104577591 -46205962 - MLT1G LTR MaLR -63 527 11 677 270 36 10 chr11 104579122 104579318 -46204235 - MIR SINE MIR -6 256 56 299 226 78 88 chr11 104579950 104580025 -46203528 + Charlie1 DNA MER1_type 1 76 -1379 2500 78 3 0 chr11 104580025 104580333 -46203220 + AluSc SINE Alu 1 309 0 299 226 78 88 chr11 104580333 104580359 -46203194 + Charlie1 DNA MER1_type 76 101 -1354 5045 168 94 36 chr11 104580362 104581574 -46201979 + Charlie1 DNA MER1_type 1480 2761 0 704 286 87 17 chr11 104581576 104581807 -46201746 + MIR SINE MIR 11 257 -5 225 169 34 85 chr11 104582243 104582302 -46201251 + L2 LINE L2 3215 3270 -2 232 111 143 48 chr11 104582692 104582755 -46200798 - MIR SINE MIR -65 197 129 203 364 12 22 chr11 104583232 104583404 -46200149 - MER5B DNA MER1_type -6 183 1 213 39 0 0 chr11 104583438 104583464 -46200089 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 249 257 319 7 chr11 104583808 104583952 -46199601 + MIR SINE MIR 68 256 -6 21 0 0 0 chr11 104584724 104584745 -46198808 + AT_rich Low_complexity Low_complexity 1 21 0 336 331 46 85 chr11 104585389 104585670 -46197883 - L2 LINE L2 0 3272 3003 2388 33 4 0 chr11 104585900 104586173 -46197380 + AluY SINE Alu 33 306 -5 335 306 37 8 chr11 104586234 104586368 -46197185 - LTR67 LTR ERVL -2 555 418 219 283 0 0 chr11 104586697 104586750 -46196803 + MIR3 SINE MIR 145 197 -11 2398 97 0 0 chr11 104587592 104587903 -46195650 - AluSx SINE Alu 0 312 2 3369 57 7 2 chr11 104590521 104590925 -46192628 + L1PA5 LINE L1 5747 6152 -2 201 175 0 0 chr11 104591500 104591540 -46192013 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 710 263 12 0 chr11 104591817 104591977 -46191576 - MER5B DNA MER1_type -6 172 11 21 36 0 0 chr11 104592285 104592313 -46191240 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr11 104594272 104594307 -46189246 + AT_rich Low_complexity Low_complexity 1 35 0 302 287 59 0 chr11 104594344 104594445 -46189108 + L2 LINE L2 3164 3270 -2 223 244 90 13 chr11 104594632 104594710 -46188843 - MIR SINE MIR -71 191 108 414 274 15 30 chr11 104594796 104594931 -46188622 - L2 LINE L2 -1 3312 3180 269 239 14 0 chr11 104595309 104595380 -46188173 + (TA)n Simple_repeat Simple_repeat 2 73 0 480 243 13 59 chr11 104595594 104595746 -46187807 - MIR3 SINE MIR 0 208 64 364 332 67 66 chr11 104595844 104596533 -46187020 - L2 LINE L2 0 3272 2586 * 505 297 57 9 chr11 104596518 104596730 -46186823 + MIR SINE MIR 14 235 -27 218 285 170 74 chr11 104597091 104597673 -46185880 - L2 LINE L2 -1150 2164 1527 204 40 0 0 chr11 104598248 104598273 -46185280 + (CAG)n Simple_repeat Simple_repeat 3 27 0 447 251 82 18 chr11 104599159 104599330 -46184223 - MIR3 SINE MIR -8 200 19 345 336 93 80 chr11 104599374 104599826 -46183727 - L2 LINE L2 0 3272 2815 1541 192 45 17 chr11 104602746 104603038 -46180515 - AluJb SINE Alu -2 300 1 587 269 63 27 chr11 104603317 104603540 -46180013 - MIR SINE MIR -10 252 22 249 218 192 0 chr11 104605378 104605456 -46178097 + MIR SINE MIR 50 143 -65 288 56 0 0 chr11 104605485 104605521 -46178032 + MADE1 DNA Mariner 1 36 -44 292 198 26 103 chr11 104605545 104605661 -46177892 - L1ME4a LINE L1 -18 6103 5997 428 170 52 105 chr11 104605942 104606095 -46177458 - L1ME4a LINE L1 -18 6103 5959 1167 85 61 27 chr11 104606418 104606535 -46177018 + MER4A LTR ERV1 1 113 -551 240 35 0 0 chr11 104606535 104606564 -46176989 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1167 85 61 27 chr11 104606564 104606691 -46176862 + MER4A LTR ERV1 113 324 -340 231 256 64 0 chr11 104606683 104606761 -46176792 + MER4C LTR ERV1 180 262 -203 * 1174 160 25 141 chr11 104607161 104607407 -46176146 - MER33 DNA MER1_type -2264 321 129 2498 99 0 0 chr11 104607407 104607719 -46175834 - AluSx SINE Alu 0 312 1 1174 160 25 141 chr11 104607719 104607835 -46175718 - MER33 DNA MER1_type -2456 129 1 8760 130 168 81 chr11 104608091 104609281 -46174272 - MER4A-int LTR ERV1 -4202 2396 1311 396 59 0 0 chr11 104609281 104609332 -46174221 + (CA)n Simple_repeat Simple_repeat 2 52 0 8760 130 168 81 chr11 104609332 104609682 -46173871 - MER4A-int LTR ERV1 -5287 1311 993 1918 123 0 11 chr11 104609682 104609959 -46173594 + AluSx SINE Alu 23 296 -16 8760 130 168 81 chr11 104609959 104610125 -46173428 - MER4A-int LTR ERV1 -5605 993 843 181 54 0 54 chr11 104610125 104610162 -46173391 + (CAA)n Simple_repeat Simple_repeat 2 36 0 8760 130 168 81 chr11 104610162 104610647 -46172906 - MER4A-int LTR ERV1 -5755 843 12 1167 130 56 63 chr11 104610659 104611063 -46172490 - MER4A LTR ERV1 0 610 117 240 35 0 0 chr11 104611063 104611092 -46172461 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1167 130 56 63 chr11 104611092 104611209 -46172344 - MER4A LTR ERV1 -493 117 1 269 327 18 85 chr11 104613163 104613328 -46170225 + L2 LINE L2 3103 3256 -16 188 324 59 15 chr11 104613354 104613422 -46170131 + L2 LINE L2 3194 3264 -8 18780 147 56 38 chr11 104613471 104613493 -46170060 + MER4A-int LTR ERV1 1280 1300 -5298 1632 231 102 24 chr11 104613493 104614035 -46169518 + LTR57-int LTR ERVL 992 1575 -3768 18780 147 56 38 chr11 104614035 104617639 -46165914 + MER4A-int LTR ERV1 1300 6580 -18 3814 105 9 68 chr11 104617639 104618276 -46165277 + MER4A LTR ERV1 1 600 0 231 269 159 95 chr11 104618473 104618800 -46164753 + L2 LINE L2 2338 2685 -629 3446 139 30 10 chr11 104618965 104619474 -46164079 - MER1A DNA MER1_type -6 523 5 285 293 42 92 chr11 104619490 104619825 -46163728 + L2 LINE L2 2951 3268 -45 323 283 67 25 chr11 104620351 104620471 -46163082 - L2 LINE L2 -16 3256 3132 1586 167 78 3 chr11 104620615 104620897 -46162656 + AluJb SINE Alu 1 303 -9 2144 80 4 22 chr11 104622169 104622443 -46161110 - AluSc SINE Alu -15 294 26 976 178 167 0 chr11 104622690 104622870 -46160683 - MER6B DNA MER2_type 0 210 1 376 276 79 57 chr11 104624282 104624452 -46159101 - L3 LINE CR1 -45 1532 1354 1889 150 13 26 chr11 104624452 104624758 -46158795 + AluSx SINE Alu 1 302 -10 376 276 79 57 chr11 104624758 104624815 -46158738 - L3 LINE CR1 -223 1354 1300 2509 131 71 32 chr11 104624817 104625251 -46158302 - MSTB2 LTR MaLR -2 455 5 258 368 149 13 chr11 104626383 104626839 -46156714 + L2 LINE L2 2140 2657 -657 208 326 98 0 chr11 104627064 104627156 -46156397 + L2 LINE L2 3201 3301 -12 2125 119 10 3 chr11 104627671 104627965 -46155588 - AluSx SINE Alu -11 301 6 184 191 0 24 chr11 104628066 104628108 -46155445 + MIR SINE MIR 20 60 -148 180 328 175 19 chr11 104632148 104632416 -46151137 - L2 LINE L2 -665 2649 2340 2492 47 0 17 chr11 104632755 104633052 -46150501 + AluY SINE Alu 1 292 -19 185 259 24 47 chr11 104634904 104634989 -46148564 + L2 LINE L2 3190 3272 0 236 191 0 21 chr11 104635178 104635225 -46148328 + CT-rich Low_complexity Low_complexity 3 48 0 472 209 7 124 chr11 104636616 104636769 -46146784 + L2 LINE L2 3137 3271 -1 1070 196 69 5 chr11 104636844 104637048 -46146505 - MER58A DNA MER1_type -5 219 3 714 260 41 37 chr11 104637737 104637979 -46145574 - MIR SINE MIR -10 252 10 206 275 43 0 chr11 104638054 104638123 -46145430 - MIR3 SINE MIR -35 173 102 198 0 0 0 chr11 104638543 104638565 -46144988 + (GAAA)n Simple_repeat Simple_repeat 1 22 0 441 198 0 0 chr11 104639101 104639192 -46144361 + (CATATA)n Simple_repeat Simple_repeat 6 96 0 208 217 33 0 chr11 104639221 104639281 -46144272 + (TA)n Simple_repeat Simple_repeat 2 63 0 480 293 0 27 chr11 104639425 104639575 -46143978 - L1ME LINE L1 -5921 149 4 2250 98 0 35 chr11 104639608 104639926 -46143627 + AluSx SINE Alu 1 307 -5 25 31 0 0 chr11 104640445 104640477 -46143076 + AT_rich Low_complexity Low_complexity 1 32 0 206 128 26 0 chr11 104642766 104642805 -46140748 + CT-rich Low_complexity Low_complexity 2 41 0 2047 182 18 15 chr11 104642879 104643274 -46140279 - MSTD LTR MaLR 0 396 1 266 218 261 21 chr11 104643826 104643968 -46139585 + MIR SINE MIR 87 262 0 411 327 100 9 chr11 104643971 104644191 -46139362 - MIR SINE MIR -13 249 10 440 246 32 8 chr11 104644856 104644982 -46138571 - MIR SINE MIR -91 171 43 287 226 57 47 chr11 104645215 104645321 -46138232 + MIR SINE MIR 66 172 -90 479 331 22 11 chr11 104645980 104646161 -46137392 - MIR SINE MIR -78 184 2 339 325 16 46 chr11 104647005 104647199 -46136354 + MIR3 SINE MIR 16 203 -5 231 304 128 0 chr11 104648051 104648177 -46135376 + MIR SINE MIR 20 157 -63 640 237 93 34 chr11 104650010 104650246 -46133307 + MIR SINE MIR 7 256 -6 387 216 60 119 chr11 104650368 104650502 -46133051 - L2 LINE L2 0 3313 3188 218 184 41 0 chr11 104651283 104651332 -46132221 + (CATA)n Simple_repeat Simple_repeat 2 52 0 265 258 22 0 chr11 104651475 104651564 -46131989 - L1ME4a LINE L1 -200 5921 5831 3195 94 44 2 chr11 104651590 104652046 -46131507 - L1PA8 LINE L1 -8 6164 5690 180 0 0 0 chr11 104654511 104654531 -46129022 + (TTG)n Simple_repeat Simple_repeat 2 21 0 465 113 28 0 chr11 104654623 104654694 -46128859 - Tigger4(Zombi) DNA MER2_type -1 2730 2658 266 324 83 21 chr11 104655490 104655635 -46127918 + MIR SINE MIR 15 168 -94 235 273 216 0 chr11 104656222 104656310 -46127243 + L2 LINE L2 3196 3302 -11 181 386 0 11 chr11 104656600 104656688 -46126865 + L3b LINE CR1 1441 1527 -56 335 305 39 8 chr11 104657675 104657803 -46125750 + MIR SINE MIR 20 151 -111 702 284 93 3 chr11 104658300 104658589 -46124964 + L1ME4a LINE L1 5528 5842 -279 377 296 20 33 chr11 104658639 104658791 -46124762 - MIR SINE MIR -76 186 37 184 328 60 37 chr11 104659962 104660096 -46123457 + MIR3 SINE MIR 6 142 -66 587 303 86 4 chr11 104661453 104661687 -46121866 + MIR SINE MIR 3 255 -7 2246 116 3 0 chr11 104661765 104662059 -46121494 + AluSq SINE Alu 1 295 -18 252 0 0 0 chr11 104662705 104662733 -46120820 + (TAA)n Simple_repeat Simple_repeat 2 29 0 185 133 0 0 chr11 104664721 104664751 -46118802 + MIR SINE MIR 117 146 -116 250 324 135 18 chr11 104666276 104666470 -46117083 + MIR SINE MIR 3 210 -52 365 226 83 0 chr11 104666491 104666575 -46116978 + MER5A DNA MER1_type 14 104 -85 206 118 0 0 chr11 104667399 104667433 -46116120 + (A)n Simple_repeat Simple_repeat 1 34 0 304 246 129 41 chr11 104671926 104672097 -46111456 - MIR SINE MIR 0 262 77 333 0 0 0 chr11 104672231 104672268 -46111285 + (CA)n Simple_repeat Simple_repeat 2 38 0 591 318 33 12 chr11 104673935 104674177 -46109376 - MARNA DNA Mariner -88 498 252 276 273 221 39 chr11 104675870 104676024 -46107529 - MIR SINE MIR -52 210 29 224 167 78 100 chr11 104677118 104677208 -46106345 - MIR SINE MIR -73 189 102 599 292 92 15 chr11 104678031 104678272 -46105281 - MIR SINE MIR 0 262 11 320 346 108 56 chr11 104678376 104678821 -46104732 + L2 LINE L2 2804 3271 -1 21 0 0 0 chr11 104679115 104679136 -46104417 + AT_rich Low_complexity Low_complexity 1 21 0 250 221 77 39 chr11 104680200 104680304 -46103249 - MIR SINE MIR -116 146 39 703 267 80 52 chr11 104682328 104682773 -46100780 - MLT1G1 LTR MaLR -66 529 1 375 319 47 24 chr11 104682783 104682952 -46100601 - MIR SINE MIR -29 233 61 353 297 9 9 chr11 104683229 104683340 -46100213 - MIR SINE MIR -6 256 146 613 269 71 21 chr11 104683473 104683711 -46099842 + MIR SINE MIR 13 262 0 1591 171 11 8 chr11 104684318 104684581 -46098972 + AluJo SINE Alu 10 273 -39 204 67 0 0 chr11 104684589 104684619 -46098934 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 2879 82 11 16 chr11 104685385 104685751 -46097802 - THE1B LTR MaLR 0 364 1 209 136 0 23 chr11 104685986 104686030 -46097523 + (TTTCC)n Simple_repeat Simple_repeat 2 44 0 15071 202 48 27 chr11 104686357 104688005 -46095548 - L1MA5 LINE L1 0 7362 5750 2201 87 10 17 chr11 104688005 104688303 -46095250 + AluY SINE Alu 1 296 -15 15071 202 48 27 chr11 104688303 104688447 -46095106 - L1MA5 LINE L1 -1612 5750 5610 1736 122 12 12 chr11 104688447 104688702 -46094851 - L1PA8A LINE L1 -3 6128 5874 15071 202 48 27 chr11 104688702 104691367 -46092186 - L1MA5 LINE L1 -1752 5610 3002 216 0 0 0 chr11 104691367 104691391 -46092162 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 15071 202 48 27 chr11 104691391 104693202 -46090351 - L1MA5 LINE L1 -4360 3002 7 1982 238 43 5 chr11 104693793 104694230 -46089323 - LTR40c LTR ERVL -5 460 7 707 247 40 44 chr11 104694452 104694679 -46088874 - MIR SINE MIR -34 228 3 438 311 124 6 chr11 104694972 104695068 -46088485 - MER91B DNA MER1_type 0 190 107 198 0 0 0 chr11 104695068 104695090 -46088463 + (TA)n Simple_repeat Simple_repeat 2 23 0 438 311 124 6 chr11 104695090 104695154 -46088399 - MER91B DNA MER1_type -83 107 11 198 331 25 1 chr11 104695164 104695254 -46088299 + MIR SINE MIR 38 128 -80 423 153 23 130 chr11 104696140 104696271 -46087282 + MIR SINE MIR 106 222 -40 1200 206 0 0 chr11 104696307 104696516 -46087037 - MER3 DNA MER1_type 0 209 1 228 35 0 0 chr11 104696694 104696723 -46086830 + (CA)n Simple_repeat Simple_repeat 2 30 0 479 279 26 102 chr11 104696917 104697182 -46086371 + L2 LINE L2 3028 3272 0 450 0 0 0 chr11 104697189 104697239 -46086314 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 2082 190 49 8 chr11 104697470 104697911 -46085642 + L1MB8 LINE L1 5657 6112 -66 * 4669 196 20 19 chr11 104697909 104698941 -46084612 + L1MB7 LINE L1 3529 4561 -1585 4666 118 34 10 chr11 104698943 104699657 -46083896 - Tigger1 DNA MER2_type -12 2406 1676 5038 159 15 15 chr11 104699706 104700914 -46082639 - L1PA16 LINE L1 -113 6053 4850 * 6353 184 19 8 chr11 104700912 104702152 -46081401 + L1PA16 LINE L1 3580 4832 -1314 11002 117 18 39 chr11 104702153 104703891 -46079662 - Tigger1 DNA MER2_type -715 1703 1 3323 190 19 7 chr11 104703894 104704572 -46078981 + L1MB7 LINE L1 4563 5248 -898 4991 161 19 2 chr11 104704581 104705447 -46078106 + L1MB7 LINE L1 5305 6184 0 547 251 59 44 chr11 104705943 104706146 -46077407 - MIR SINE MIR -53 209 4 328 361 132 5 chr11 104706388 104706601 -46076952 + MIR SINE MIR 15 254 -8 2233 109 0 0 chr11 104706601 104706895 -46076658 - AluSx SINE Alu -18 294 1 254 87 0 0 chr11 104707174 104707220 -46076333 - LTR66 LTR ERVL -171 439 394 196 29 29 29 chr11 104707221 104707255 -46076298 + (TA)n Simple_repeat Simple_repeat 2 35 0 261 0 0 0 chr11 104707266 104707295 -46076258 + (CA)n Simple_repeat Simple_repeat 2 30 0 432 328 108 20 chr11 104707668 104707863 -46075690 - L2 LINE L2 -18 3254 3043 387 341 81 4 chr11 104707908 104708166 -46075387 - LTR16A LTR ERVL -3 447 170 1643 203 37 76 chr11 104708844 104709381 -46074172 - L1MC5 LINE L1 -110 7851 7336 2137 95 3 3 chr11 104709997 104710318 -46073235 + AluSx SINE Alu 1 321 0 5100 133 53 18 chr11 104710329 104711221 -46072332 - Tigger3b DNA MER2_type -308 923 1 195 305 17 0 chr11 104714401 104714460 -46069093 - L2 LINE L2 0 3313 3254 560 283 61 20 chr11 104714883 104715081 -46068472 - MIR SINE MIR -48 214 9 325 305 147 0 chr11 104715361 104715516 -46068037 - MIR SINE MIR -71 137 14 669 224 43 6 chr11 104716025 104716186 -46067367 + MIR SINE MIR 29 195 -67 1850 150 11 4 chr11 104716478 104716758 -46066795 - AluJo SINE Alu -30 282 1 518 250 109 0 chr11 104716834 104716990 -46066563 - MIR3 SINE MIR 0 208 36 3133 219 78 35 chr11 104717291 104718008 -46065545 - MER21B LTR ERV1 -12 851 95 892 144 24 0 chr11 104718008 104718133 -46065420 + FLAM_C SINE Alu 2 129 -4 3133 219 78 35 chr11 104718133 104718213 -46065340 - MER21B LTR ERV1 -768 95 20 417 263 0 21 chr11 104718234 104718329 -46065224 - MER21B LTR ERV1 -770 93 1 262 348 54 0 chr11 104718364 104718456 -46065097 - L2 LINE L2 -14 3258 3162 699 192 159 0 chr11 104718458 104718609 -46064944 + MER20 DNA MER1_type 3 177 -42 226 125 0 0 chr11 104718781 104718813 -46064740 + MER20 DNA MER1_type 181 212 -7 290 326 131 27 chr11 104718923 104719144 -46064409 - L2 LINE L2 -203 3069 2826 357 286 132 18 chr11 104719258 104719478 -46064075 - L2 LINE L2 -517 2797 2553 1151 188 115 0 chr11 104720043 104720475 -46063078 - MLT1D LTR MaLR -6 499 1 376 268 211 11 chr11 104721672 104721862 -46061691 - MIR SINE MIR -7 255 28 984 246 81 48 chr11 104722380 104722815 -46060738 - LTR16A1 LTR ERVL 0 457 9 1984 58 4 4 chr11 104723004 104723247 -46060306 + MER75B DNA T2_type 1 243 0 634 250 51 0 chr11 104723457 104723613 -46059940 + MLT2B1 LTR ERVL 261 424 -96 211 213 138 12 chr11 104723620 104723700 -46059853 + L2 LINE L2 3104 3193 -120 1428 226 134 29 chr11 104723702 104723791 -46059762 - MER92C LTR ERV1 -2 552 474 2052 118 84 34 chr11 104723791 104724148 -46059405 - THE1C LTR MaLR 0 375 1 1428 226 134 29 chr11 104724148 104724506 -46059047 - MER92C LTR ERV1 -80 474 9 365 261 50 82 chr11 104724872 104725076 -46058477 + MIR SINE MIR 31 230 -32 241 268 116 49 chr11 104725609 104725772 -46057781 - MIR SINE MIR -54 208 35 230 281 122 58 chr11 104725834 104725973 -46057580 + MIR SINE MIR 7 154 -54 273 320 90 0 chr11 104726093 104726193 -46057360 + MIR SINE MIR 151 259 -3 239 262 244 6 chr11 104726848 104727016 -46056537 - L2 LINE L2 0 3313 3106 235 164 164 33 chr11 104727381 104727442 -46056111 + L1MC4 LINE L1 7933 8001 -41 227 301 63 111 chr11 104728148 104728286 -46055267 - L2 LINE L2 -2130 1184 1041 2274 94 3 19 chr11 104728286 104728594 -46054959 + AluSx SINE Alu 1 303 -9 227 301 63 111 chr11 104728594 104728605 -46054948 - L2 LINE L2 -2273 1041 1031 822 186 8 0 chr11 104728605 104728729 -46054824 + FLAM_A SINE Alu 1 125 -8 227 301 63 111 chr11 104728729 104729020 -46054533 - L2 LINE L2 -2283 1031 764 384 22 0 0 chr11 104729144 104729189 -46054364 + (TG)n Simple_repeat Simple_repeat 2 46 0 187 292 108 15 chr11 104729242 104729307 -46054246 - MIR SINE MIR -173 89 19 228 226 19 19 chr11 104729669 104729722 -46053831 + L3b LINE CR1 1522 1574 -9 * 246 114 0 0 chr11 104729689 104729724 -46053829 + L3 LINE CR1 1536 1570 -7 202 191 0 64 chr11 104729690 104729737 -46053816 + MIR3 SINE MIR 164 207 -1 * 622 220 31 58 chr11 104730005 104730196 -46053357 + MER5A DNA MER1_type 4 189 0 528 302 64 38 chr11 104730196 104730429 -46053124 + MIR SINE MIR 9 247 -15 868 107 8 0 chr11 104730550 104730672 -46052881 + L1PA16 LINE L1 5708 5830 -336 2862 85 44 13 chr11 104730672 104731062 -46052491 + L1PA10 LINE L1 5762 6163 -5 2509 103 12 0 chr11 104731072 104731412 -46052141 + L1PA16 LINE L1 5814 6157 -9 468 101 130 0 chr11 104731636 104731705 -46051848 + MADE1 DNA Mariner 1 78 -2 530 263 0 45 chr11 104732037 104732170 -46051383 - MIR SINE MIR -62 146 20 284 256 23 12 chr11 104732259 104732345 -46051208 - L3b LINE CR1 -201 1382 1296 234 0 0 0 chr11 104732587 104732613 -46050940 + (T)n Simple_repeat Simple_repeat 1 26 0 2358 160 58 17 chr11 104733901 104734314 -46049239 + MSTB1 LTR MaLR 3 432 0 188 108 0 27 chr11 104734703 104734740 -46048813 + (CA)n Simple_repeat Simple_repeat 2 37 0 598 211 154 6 chr11 104735654 104735810 -46047743 - MER5A DNA MER1_type -5 184 6 206 364 86 32 chr11 104736172 104736359 -46047194 - L2 LINE L2 0 3272 3076 293 296 141 45 chr11 104736475 104736674 -46046879 - MIR SINE MIR -29 233 16 1180 237 171 68 chr11 104737268 104737800 -46045753 - MLT1G1 LTR MaLR -3 592 6 506 277 22 0 chr11 104737941 104738078 -46045475 + Charlie8 DNA MER1_type 125 264 -2153 196 154 39 0 chr11 104738547 104738599 -46044954 + (TA)n Simple_repeat Simple_repeat 1 54 0 1454 216 131 55 chr11 104738831 104739344 -46044209 + L2 LINE L2 1873 2424 -890 356 323 50 0 chr11 104740355 104740454 -46043099 + L2 LINE L2 3168 3271 -1 2178 120 3 7 chr11 104740791 104741100 -46042453 - AluSx SINE Alu 0 312 5 568 222 72 17 chr11 104741101 104741246 -46042307 - MIR SINE MIR -63 145 8 2293 136 40 0 chr11 104741285 104741609 -46041944 - MER1B DNA MER1_type 0 337 1 786 248 21 19 chr11 104741865 104742156 -46041397 + LTR16B LTR ERVL 109 464 0 1897 158 0 0 chr11 104742259 104742615 -46040938 + AluSx SINE Alu 1 356 0 238 122 143 0 chr11 104743229 104743278 -46040275 + MER34B LTR ERV1 446 501 -64 * 247 190 89 38 chr11 104743250 104743329 -46040224 + MER34 LTR ERV1 450 532 -10 31 0 0 0 chr11 104743346 104743377 -46040176 + AT_rich Low_complexity Low_complexity 1 31 0 1532 144 43 119 chr11 104744356 104744751 -46038802 - MLT1A1 LTR MaLR 0 365 1 200 35 35 0 chr11 104744753 104744782 -46038771 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 216 318 42 62 chr11 104745022 104745214 -46038339 - L2 LINE L2 -221 3051 2864 261 329 19 76 chr11 104745556 104745714 -46037839 - L3 LINE CR1 -283 1294 1146 1458 168 7 41 chr11 104745755 104746047 -46037506 + AluJo SINE Alu 1 282 -30 1002 184 0 0 chr11 104746087 104746245 -46037308 - FAM SINE Alu -17 158 1 256 254 0 48 chr11 104746326 104746389 -46037164 - L2 LINE L2 -31 3282 3223 380 269 167 48 chr11 104746440 104746626 -46036927 - MIR SINE MIR -6 256 49 232 289 0 0 chr11 104746690 104746735 -46036818 + L2 LINE L2 3205 3249 -23 228 214 0 0 chr11 104746817 104746873 -46036680 + CT-rich Low_complexity Low_complexity 2 57 0 228 263 18 0 chr11 104747503 104747560 -46035993 + GA-rich Low_complexity Low_complexity 2 59 0 310 278 60 33 chr11 104747688 104747839 -46035714 - L2 LINE L2 -943 2371 2217 2361 96 0 6 chr11 104747941 104748275 -46035278 - AluSp SINE Alu 0 332 1 1218 125 5 5 chr11 104748815 104749007 -46034546 + Tigger2 DNA MER2_type 957 1148 -1570 2195 114 7 0 chr11 104749007 104749305 -46034248 + AluSx SINE Alu 1 300 -12 1980 129 13 7 chr11 104749364 104749666 -46033887 + AluSq SINE Alu 1 304 -9 282 164 0 0 chr11 104750284 104750339 -46033214 + (TG)n Simple_repeat Simple_repeat 2 56 0 526 194 0 0 chr11 104751126 104751219 -46032334 - MER5B DNA MER1_type 0 178 86 16745 127 35 12 chr11 104751236 104752737 -46030816 - Tigger2 DNA MER2_type -40 2678 1090 2100 125 10 13 chr11 104752737 104753040 -46030513 - AluSx SINE Alu -10 302 1 16745 127 35 12 chr11 104753040 104754142 -46029411 - Tigger2 DNA MER2_type -1628 1090 15 485 218 11 0 chr11 104754144 104754231 -46029322 - MER5B DNA MER1_type -90 88 1 473 245 136 42 chr11 104754233 104754564 -46028989 + HAL1 LINE L1 1030 1391 -1116 749 279 50 22 chr11 104754724 104754853 -46028700 + HAL1 LINE L1 1469 1593 -914 237 65 0 0 chr11 104754853 104754884 -46028669 + (TG)n Simple_repeat Simple_repeat 1 31 0 749 279 50 22 chr11 104754884 104755076 -46028477 + HAL1 LINE L1 1593 1799 -708 1099 278 177 7 chr11 104755472 104755936 -46027617 + REP3 LTR ERV 2 544 -18 324 320 22 22 chr11 104756335 104756563 -46026990 - L1M4 LINE L1 -1577 4569 4342 1126 69 0 0 chr11 104757479 104757610 -46025943 - AluSg SINE Alu -179 131 1 1044 222 54 0 chr11 104757822 104758043 -46025510 - MER45C DNA AcHobo -695 258 26 421 286 126 6 chr11 104758174 104758356 -46025197 - MIR SINE MIR -58 204 1 442 264 57 26 chr11 104759157 104759350 -46024203 + MIR SINE MIR 2 200 -62 2193 106 10 22 chr11 104759382 104759694 -46023859 - AluSx SINE Alu -4 308 1 222 311 142 0 chr11 104760219 104760325 -46023228 + MIR SINE MIR 86 206 -56 1561 112 0 14 chr11 104760329 104760544 -46023009 - AluSq SINE Alu -5 308 97 233 234 187 19 chr11 104763059 104763166 -46020387 + L2 LINE L2 1955 2079 -1235 557 224 103 17 chr11 104763251 104763425 -46020128 + L2 LINE L2 2084 2272 -1042 1697 234 114 31 chr11 104763896 104764413 -46019140 + MER68 LTR ERV1 1 560 -2 441 54 0 0 chr11 104764653 104764709 -46018844 + (CA)n Simple_repeat Simple_repeat 2 57 0 23 54 0 0 chr11 104765043 104765080 -46018473 + AT_rich Low_complexity Low_complexity 1 37 0 2131 82 71 0 chr11 104765491 104765772 -46017781 - AluSg SINE Alu -9 301 1 655 182 61 0 chr11 104766002 104766017 -46017536 - MER33 DNA MER1_type -2445 140 127 2540 93 0 0 chr11 104766017 104766329 -46017224 - AluSx SINE Alu 0 312 1 655 182 61 0 chr11 104766329 104766445 -46017108 - MER33 DNA MER1_type -2458 127 1 8673 129 169 82 chr11 104766701 104767892 -46015661 - MER4A-int LTR ERV1 -4202 2396 1310 396 59 0 0 chr11 104767892 104767943 -46015610 + (CA)n Simple_repeat Simple_repeat 2 52 0 8673 129 169 82 chr11 104767943 104768293 -46015260 - MER4A-int LTR ERV1 -5288 1310 992 1760 125 4 21 chr11 104768293 104768572 -46014981 + AluSx SINE Alu 23 296 -16 8673 129 169 82 chr11 104768572 104768738 -46014815 - MER4A-int LTR ERV1 -5606 992 842 181 54 0 54 chr11 104768738 104768775 -46014778 + (CAA)n Simple_repeat Simple_repeat 2 36 0 8673 129 169 82 chr11 104768775 104769260 -46014293 - MER4A-int LTR ERV1 -5756 842 12 1167 130 56 63 chr11 104769272 104769676 -46013877 - MER4A LTR ERV1 0 610 117 240 35 0 0 chr11 104769676 104769705 -46013848 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1167 130 56 63 chr11 104769705 104769822 -46013731 - MER4A LTR ERV1 -493 117 1 428 170 52 105 chr11 104770145 104770298 -46013255 + L1ME4a LINE L1 5959 6103 -18 292 198 26 103 chr11 104770580 104770696 -46012857 + L1ME4a LINE L1 5997 6103 -18 288 56 0 0 chr11 104770720 104770756 -46012797 + MADE1 DNA Mariner 45 80 0 249 218 192 0 chr11 104770785 104770863 -46012690 - MIR SINE MIR -65 143 50 587 269 63 27 chr11 104772701 104772924 -46010629 + MIR SINE MIR 22 252 -10 1541 192 45 17 chr11 104773203 104773495 -46010058 + AluJb SINE Alu 1 300 -2 352 339 93 80 chr11 104776415 104776867 -46006686 + L2 LINE L2 2815 3272 0 451 251 82 18 chr11 104776911 104777082 -46006471 + MIR3 SINE MIR 19 200 -8 204 40 0 0 chr11 104777968 104777993 -46005560 + (CTG)n Simple_repeat Simple_repeat 3 27 0 224 296 164 66 chr11 104778559 104779151 -46004402 + L2 LINE L2 1515 2164 -1150 263 280 13 0 chr11 104779512 104779587 -46003966 - MIR SINE MIR -27 235 160 23 54 0 0 chr11 104779829 104779866 -46003687 + AT_rich Low_complexity Low_complexity 1 37 0 2149 82 71 0 chr11 104780277 104780558 -46002995 - AluSg SINE Alu -9 301 1 23 54 0 0 chr11 104780831 104780868 -46002685 + AT_rich Low_complexity Low_complexity 1 37 0 785 249 56 0 chr11 104781329 104781526 -46002027 + MER58A DNA MER1_type 17 224 0 309 301 106 88 chr11 104782170 104782715 -46000838 + L2 LINE L2 2301 2855 -459 226 293 26 60 chr11 104782754 104782870 -46000683 - MIR SINE MIR -108 154 43 191 219 49 0 chr11 104784419 104784460 -45999093 + L2 LINE L2 3219 3261 -11 189 0 0 0 chr11 104784758 104784779 -45998774 + (CA)n Simple_repeat Simple_repeat 2 22 0 268 286 265 1 chr11 104785641 104785761 -45997792 + MIR SINE MIR 39 186 -62 361 298 83 0 chr11 104787555 104787676 -45995877 + L2 LINE L2 3182 3312 -1 1152 314 115 25 chr11 104787810 104788558 -45994995 + L2 LINE L2 2345 3173 -140 953 282 4 8 chr11 104788574 104788829 -45994724 + MIR SINE MIR 1 254 -8 267 54 0 0 chr11 104788830 104788867 -45994686 + (TTA)n Simple_repeat Simple_repeat 2 38 0 642 212 0 8 chr11 104788875 104788993 -45994560 + L2 LINE L2 3184 3300 -13 207 0 0 0 chr11 104788993 104789016 -45994537 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 610 362 62 30 chr11 104789356 104789886 -45993667 + L2 LINE L2 1157 1703 -1611 269 250 64 50 chr11 104790295 104790515 -45993038 + L1MC/D LINE L1 5297 5519 -2289 674 235 128 120 chr11 104790536 104791110 -45992443 + L2 LINE L2 2745 3313 0 180 125 0 0 chr11 104791114 104791146 -45992407 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 451 325 100 7 chr11 104791928 104792199 -45991354 + L1MC/D LINE L1 2246 2541 -3605 220 260 41 0 chr11 104792260 104792333 -45991220 + (TATATG)n Simple_repeat Simple_repeat 5 80 0 2301 117 0 0 chr11 104792454 104792762 -45990791 - AluSx SINE Alu -4 308 1 366 245 190 59 chr11 104792772 104793025 -45990528 - L1ME3A LINE L1 -202 5968 5683 614 224 118 9 chr11 104793040 104793257 -45990296 - L1ME3A LINE L1 -621 5543 5329 3625 261 78 26 chr11 104793551 104795513 -45988040 - L1ME3A LINE L1 -1410 4736 2674 22 0 0 0 chr11 104795766 104795788 -45987765 + AT_rich Low_complexity Low_complexity 1 22 0 333 299 102 29 chr11 104795937 104796859 -45986694 + L1MC/D LINE L1 4344 5332 -814 504 311 125 17 chr11 104796967 104797327 -45986226 + L1MC/D LINE L1 5414 5812 -1996 246 231 0 0 chr11 104797333 104797398 -45986155 + (TATG)n Simple_repeat Simple_repeat 2 66 0 1752 193 0 0 chr11 104797440 104797746 -45985807 + AluJb SINE Alu 1 306 -6 2151 96 0 33 chr11 104797801 104798103 -45985450 + AluSx SINE Alu 1 292 -20 4245 197 83 7 chr11 104798299 104799534 -45984019 + L1MB7 LINE L1 4087 5517 -667 2017 140 0 26 chr11 104799534 104799842 -45983711 + AluJb SINE Alu 1 300 -12 4245 197 83 7 chr11 104799842 104800565 -45982988 + L1MB7 LINE L1 5517 6184 0 543 218 105 23 chr11 104800821 104801078 -45982475 + HAL1 LINE L1 803 1080 -1427 565 258 119 35 chr11 104801094 104801490 -45982063 + HAL1 LINE L1 1141 1569 -938 763 361 55 11 chr11 104801555 104802006 -45981547 + LTR67 LTR ERVL 19 489 -68 998 281 39 11 chr11 104802008 104802389 -45981164 + HAL1 LINE L1 1683 2074 -433 2254 81 16 32 chr11 104802975 104803284 -45980269 - AluSq SINE Alu -9 304 1 2561 260 60 60 chr11 104803745 104805073 -45978480 + HAL1 LINE L1 11 1338 -1169 413 297 100 66 chr11 104805551 104806105 -45977448 + L1ME4a LINE L1 5264 5840 -281 31 88 0 0 chr11 104807101 104807181 -45976372 + AT_rich Low_complexity Low_complexity 1 80 0 186 314 58 47 chr11 104808282 104808368 -45975185 - L2 LINE L2 0 3313 3227 497 277 39 0 chr11 104808446 104808601 -45974952 + MIR SINE MIR 91 251 -11 421 288 92 7 chr11 104808982 104809135 -45974418 + L2 LINE L2 984 1149 -2165 230 211 108 70 chr11 104809449 104809634 -45973919 - L1ME3A LINE L1 -28 6142 5951 300 53 0 0 chr11 104809634 104809672 -45973881 - U2 snRNA snRNA -150 38 1 1230 283 63 12 chr11 104809677 104810186 -45973367 - L1ME3A LINE L1 -213 5957 5423 186 43 0 0 chr11 104812771 104812794 -45970759 + (TG)n Simple_repeat Simple_repeat 2 24 0 2200 135 10 44 chr11 104812935 104813105 -45970448 - MSTA LTR MaLR 0 428 254 2435 58 0 3 chr11 104813105 104813400 -45970153 + AluY SINE Alu 1 294 -17 2200 135 10 44 chr11 104813400 104813614 -45969939 - MSTA LTR MaLR -174 254 57 1817 178 18 5 chr11 104813614 104813997 -45969556 + L1MA9 LINE L1 4705 5092 -1054 3034 117 11 2 chr11 104814022 104814386 -45969167 - L1PB1 LINE L1 -1 6150 5780 365 102 17 0 chr11 104814386 104814445 -45969108 + (TA)n Simple_repeat Simple_repeat 1 60 0 3034 117 11 2 chr11 104814445 104814543 -45969010 - L1PB1 LINE L1 -371 5780 5684 3184 197 23 35 chr11 104814543 104814978 -45968575 + L1MA9 LINE L1 5333 5757 -555 2066 133 0 0 chr11 104814978 104815272 -45968281 - AluSx SINE Alu -18 294 1 3184 197 23 35 chr11 104815272 104815616 -45967937 + L1MA9 LINE L1 5757 6103 -209 704 207 0 15 chr11 104815619 104815754 -45967799 + AluJo SINE Alu 2 134 -178 360 222 25 80 chr11 104815767 104815929 -45967624 + L1MA9 LINE L1 6121 6273 -39 438 192 23 54 chr11 104815971 104816101 -45967452 - MER57A LTR ERV1 0 403 278 339 190 89 0 chr11 104816220 104816299 -45967254 - LTR54 LTR ERV1 -424 86 1 1806 254 28 16 chr11 104816299 104816803 -45966750 - LTR23-int LTR ERV1 -393 7144 6635 708 254 30 14 chr11 104816860 104817131 -45966422 - LTR23-int LTR ERV1 -804 6205 3930 1391 208 129 37 chr11 104817137 104817816 -45965737 - LTR23-int LTR ERV1 -1727 3209 2463 722 272 54 36 chr11 104817797 104818199 -45965354 - LTR23-int LTR ERV1 -1697 3183 2790 * 1799 112 0 28 chr11 104818199 104818489 -45965064 - AluSx SINE Alu 0 321 39 722 272 54 36 chr11 104818489 104818551 -45965002 - LTR23-int LTR ERV1 -2090 2790 2349 198 0 0 0 chr11 104818559 104818581 -45964972 + (TTTCC)n Simple_repeat Simple_repeat 4 25 0 1243 154 195 0 chr11 104818582 104818828 -45964725 - AluJo SINE Alu -8 294 1 327 127 14 14 chr11 104818834 104818905 -45964648 - LTR23-int LTR ERV1 -3075 2048 1978 314 354 53 9 chr11 104819252 104819365 -45964188 + L2 LINE L2 3155 3272 0 276 236 0 11 chr11 104819667 104819756 -45963797 - MER57A-int LTR ERV1 -3291 1832 1745 347 258 0 11 chr11 104819759 104819852 -45963701 + MER34 LTR ERV1 1 92 -450 615 251 132 0 chr11 104820159 104820378 -45963175 - MER34C LTR ERV1 -177 408 161 462 180 0 30 chr11 104820420 104820520 -45963033 - MER57A-int LTR ERV1 -4535 401 305 235 61 0 0 chr11 104820906 104820939 -45962614 - L1 LINE L1 -908 5238 5206 6417 159 9 6 chr11 104820975 104822255 -45961298 - L1 LINE L1 -931 5215 3875 665 261 82 5 chr11 104822666 104822873 -45960680 - MER57A-int LTR ERV1 -7312 225 3 468 203 203 98 chr11 104822876 104823122 -45960431 - MER57A LTR ERV1 0 403 132 298 151 178 0 chr11 104823135 104823208 -45960345 - LTR54 LTR ERV1 -424 86 1 3259 160 33 16 chr11 104823208 104823846 -45959707 + L1MA8 LINE L1 5641 6289 -2 1245 230 13 21 chr11 104823855 104824233 -45959320 - L1MC3 LINE L1 -644 7141 6767 248 267 20 20 chr11 104824300 104824401 -45959152 + T-rich Low_complexity Low_complexity 2 102 0 516 315 132 31 chr11 104824485 104825031 -45958522 - L1 LINE L1 -3313 2833 2233 237 261 102 34 chr11 104826401 104826577 -45956976 + L1P LINE L1 2270 2457 -3689 2306 196 28 0 chr11 104826605 104827106 -45956447 - L1MB3 LINE L1 -3 6180 5666 26 50 0 0 chr11 104827243 104827283 -45956270 + AT_rich Low_complexity Low_complexity 1 40 0 2008 127 3 17 chr11 104828397 104828689 -45954864 - AluSx SINE Alu -24 288 1 940 134 8 0 chr11 104828689 104828823 -45954730 - AluSq/x SINE Alu -177 135 1 758 125 0 0 chr11 104828850 104828962 -45954591 - L1PA13 LINE L1 -11 6152 6041 331 300 0 0 chr11 104828981 104829071 -45954482 + L1MC4 LINE L1 6614 6703 -1339 312 322 0 0 chr11 104829005 104829095 -45954458 - L1MC4 LINE L1 -1339 6703 6614 * 267 217 0 0 chr11 104829095 104829155 -45954398 + (TATG)n Simple_repeat Simple_repeat 4 63 0 336 159 0 14 chr11 104829155 104829224 -45954329 + LTR66 LTR ERVL 394 461 -149 791 78 0 0 chr11 104829224 104829326 -45954227 - L1PA14 LINE L1 -156 6005 5904 443 285 106 43 chr11 104829700 104830069 -45953484 - L2 LINE L2 -339 2975 2584 2277 132 0 0 chr11 104830099 104830403 -45953150 + AluSx SINE Alu 1 304 -8 1742 107 44 67 chr11 104830551 104830849 -45952704 - AluSx SINE Alu -21 291 1 583 272 91 11 chr11 104830864 104831151 -45952402 - L1MC3 LINE L1 -692 7093 6784 227 308 0 17 chr11 104831203 104831320 -45952233 + T-rich Low_complexity Low_complexity 5 119 0 327 271 59 73 chr11 104831354 104831657 -45951896 - L1M4 LINE L1 -3264 2882 2584 280 221 47 12 chr11 104831846 104831932 -45951621 - L1M4 LINE L1 -3790 2356 2268 1343 158 123 71 chr11 104832612 104833036 -45950517 - LTR7 LTR ERV1 -2 448 3 2568 105 8 5 chr11 104833038 104833427 -45950126 - HERVH LTR ERV1 0 7713 7324 16508 125 29 10 chr11 104833427 104836058 -45947495 - HERVH LTR ERV1 -1894 5819 3140 5336 111 0 17 chr11 104836037 104836842 -45946711 - HERVH LTR ERV1 -4718 2995 2205 * 2482 180 13 11 chr11 104836845 104837300 -45946253 - HERVH LTR ERV1 -6457 1256 801 2524 138 12 2 chr11 104837411 104837811 -45945742 - HERVH LTR ERV1 -7298 415 12 1243 181 75 106 chr11 104837823 104838287 -45945266 - LTR7 LTR ERV1 0 450 1 201 342 0 0 chr11 104840082 104840158 -45943395 + (TTGGGG)n Simple_repeat Simple_repeat 4 79 0 1919 161 93 30 chr11 104841682 104842039 -45941514 + MSTA LTR MaLR 4 390 -38 2038 128 10 0 chr11 104842039 104842329 -45941224 - AluSq SINE Alu -20 293 1 1919 161 93 30 chr11 104842329 104842368 -45941185 + MSTA LTR MaLR 390 425 -3 508 259 86 10 chr11 104842529 104842726 -45940827 + MIR SINE MIR 24 235 -27 321 262 109 64 chr11 104842757 104843024 -45940529 + L1M4 LINE L1 2943 3221 -2925 305 327 68 8 chr11 104843243 104843491 -45940062 + L1M4 LINE L1 3688 3950 -2196 202 322 178 32 chr11 104845619 104845989 -45937564 - L2 LINE L2 -359 2955 2532 666 318 96 3 chr11 104846500 104846802 -45936751 + LTR16A LTR ERVL 120 449 -1 430 245 60 46 chr11 104847119 104847270 -45936283 + L1ME3 LINE L1 5513 5665 -497 535 234 25 51 chr11 104847348 104847542 -45936011 + L1ME2 LINE L1 5911 6094 -68 4288 223 14 1 chr11 104847609 104848606 -45934947 + L1 LINE L1 2629 3638 -2508 372 231 0 13 chr11 104848606 104848684 -45934869 + MER2 DNA MER2_type 269 345 0 355 247 155 6 chr11 104848710 104848884 -45934669 + L1ME3 LINE L1 5655 5854 -308 1051 190 23 94 chr11 104848980 104849332 -45934221 - L1MC3 LINE L1 -692 7093 6767 1776 89 16 83 chr11 104849759 104850073 -45933480 - AluSx SINE Alu -19 293 1 340 287 112 39 chr11 104850153 104850411 -45933142 - L1M4 LINE L1 -3603 2543 2267 1608 165 29 26 chr11 104851942 104852251 -45931302 - AluSx SINE Alu -1 311 2 309 236 27 18 chr11 104853245 104853355 -45930198 - L1M4 LINE L1 -2929 3217 3107 1570 168 7 4 chr11 104855521 104855795 -45927758 - L1MB3 LINE L1 -243 5940 5666 22 88 0 0 chr11 104855899 104855956 -45927597 + AT_rich Low_complexity Low_complexity 1 57 0 264 229 29 29 chr11 104856993 104857098 -45926455 + L1M4 LINE L1 2663 2767 -3379 260 356 95 30 chr11 104857459 104857828 -45925725 - L2 LINE L2 -277 2995 2583 1168 176 0 33 chr11 104857855 104858065 -45925488 + AluJb SINE Alu 85 287 -25 290 347 53 0 chr11 104858282 104858432 -45925121 + HAL1 LINE L1 361 518 -1989 884 298 41 9 chr11 104858628 104858947 -45924606 + LTR16A LTR ERVL 120 448 -2 405 295 36 24 chr11 104858975 104859141 -45924412 - ERVL LTR ERVL -693 5071 4904 1178 274 47 22 chr11 104859264 104859817 -45923736 + L1ME2 LINE L1 5513 6141 -23 384 230 0 11 chr11 104859975 104860062 -45923491 + MER2 DNA MER2_type 260 345 0 862 210 85 27 chr11 104860378 104860673 -45922880 - L1MC3 LINE L1 -692 7093 6782 21 36 0 0 chr11 104860979 104861007 -45922546 + AT_rich Low_complexity Low_complexity 1 28 0 235 288 52 33 chr11 104861205 104861358 -45922195 - L1M4 LINE L1 -3604 2542 2387 214 246 0 0 chr11 104863917 104863978 -45919575 + (TCG)n Simple_repeat Simple_repeat 1 61 0 1989 161 48 43 chr11 104865539 104865702 -45917851 + MSTA LTR MaLR 30 191 -237 2123 125 0 0 chr11 104865702 104866012 -45917541 + AluSx SINE Alu 1 310 0 1989 161 48 43 chr11 104866012 104866244 -45917309 + MSTA LTR MaLR 191 428 0 8678 199 16 15 chr11 104866246 104867888 -45915665 + MSTA-int LTR MaLR 3 1646 -5 2250 148 67 7 chr11 104867893 104868297 -45915256 + MSTA LTR MaLR 1 428 0 3779 131 22 5 chr11 104868422 104869011 -45914542 - LTR43 LTR ERV1 0 602 4 600 254 107 5 chr11 104869257 104869462 -45914091 + MIR SINE MIR 18 243 -19 501 301 24 4 chr11 104869967 104870213 -45913340 + L1ME2 LINE L1 3688 3938 -2208 195 349 149 22 chr11 104872495 104872770 -45910783 - L2 LINE L2 -492 2822 2513 1081 260 61 6 chr11 104873281 104873593 -45909960 + LTR16A LTR ERVL 120 448 -2 404 261 60 15 chr11 104873918 104874052 -45909501 + L1ME2 LINE L1 5513 5652 -512 1062 280 14 45 chr11 104874053 104874496 -45909057 + L1ME2 LINE L1 5713 6141 -23 633 261 30 10 chr11 104874534 104874733 -45908820 + HAL1 LINE L1 165 367 -2140 274 286 44 0 chr11 104875731 104875822 -45907731 - L1MC/D LINE L1 -2032 5776 5682 310 310 100 15 chr11 104875889 104876150 -45907403 - L1MC/D LINE L1 -606 5556 5274 4192 153 40 7 chr11 104876529 104877249 -45906304 + Tigger2 DNA MER2_type 1 744 -1974 1530 151 16 4 chr11 104877301 104877559 -45905994 + Tigger2 DNA MER2_type 2448 2708 -10 334 354 67 5 chr11 104877684 104877879 -45905674 + MIR SINE MIR 53 259 -3 360 286 96 6 chr11 104877913 104878157 -45905396 + L1ME3A LINE L1 5162 5421 -749 252 213 0 80 chr11 104878159 104878234 -45905319 - AluJ/FRAM SINE Alu -4 298 230 634 280 142 14 chr11 104878264 104878407 -45905146 + L1ME3A LINE L1 5465 5588 -582 812 210 180 33 chr11 104878407 104878707 -45904846 + MER2 DNA MER2_type 1 344 0 634 280 142 14 chr11 104878707 104878909 -45904644 + L1ME3A LINE L1 5588 5854 -316 1091 223 34 28 chr11 104879008 104879331 -45904222 - L1MC3 LINE L1 -694 7091 6767 212 155 0 17 chr11 104879414 104879472 -45904081 + T-rich Low_complexity Low_complexity 3 59 0 361 281 120 66 chr11 104879717 104880066 -45903487 - L1M4 LINE L1 -3526 2620 2253 21 0 0 0 chr11 104882423 104882444 -45901109 + AT_rich Low_complexity Low_complexity 1 21 0 2480 81 3 0 chr11 104883311 104883619 -45899934 + AluSp SINE Alu 1 309 -4 300 103 0 0 chr11 104883798 104883837 -45899716 - tRNA-Ile-ATT tRNA tRNA -38 39 1 680 282 45 48 chr11 104883845 104884221 -45899332 - L2 LINE L2 -604 2710 2336 1675 288 50 13 chr11 104884310 104885367 -45898186 - L1ME3 LINE L1 -265 5897 4793 258 191 0 16 chr11 104885354 104885417 -45898136 + L1MC4 LINE L1 6641 6702 -1340 * 211 187 55 11 chr11 104885418 104885509 -45898044 + (TA)n Simple_repeat Simple_repeat 1 95 0 23 0 0 0 chr11 104885514 104885537 -45898016 + AT_rich Low_complexity Low_complexity 1 23 0 209 123 62 0 chr11 104885538 104885603 -45897950 + (TA)n Simple_repeat Simple_repeat 1 69 0 188 61 61 0 chr11 104885602 104885635 -45897918 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 * 1538 185 0 0 chr11 104885635 104885873 -45897680 - AluJb SINE Alu -30 282 45 302 298 41 16 chr11 104885881 104886002 -45897551 - L1ME3 LINE L1 -1351 4795 4672 1061 331 33 43 chr11 104886007 104886587 -45896966 - ERVL LTR ERVL -1913 3851 3278 482 274 153 0 chr11 104886588 104886745 -45896808 - MER5A DNA MER1_type 0 189 9 853 148 14 114 chr11 104886803 104887013 -45896540 + MER5A DNA MER1_type 1 189 0 314 180 0 16 chr11 104887037 104887098 -45896455 + MER5B DNA MER1_type 80 139 -39 661 150 0 0 chr11 104887099 104887199 -45896354 + FRAM SINE Alu 1 99 -77 4417 139 35 13 chr11 104888957 104889706 -45893847 - L1MC1 LINE L1 0 6333 5569 180 412 0 10 chr11 104889860 104889962 -45893591 + MIR SINE MIR 36 136 -72 181 171 0 0 chr11 104890031 104890066 -45893487 + MIR SINE MIR 228 262 0 2128 120 3 7 chr11 104890861 104891162 -45892391 - AluSg SINE Alu -10 300 1 630 291 215 8 chr11 104891253 104891635 -45891918 - L2 LINE L2 0 3313 2853 193 349 57 19 chr11 104891824 104891930 -45891623 + L2 LINE L2 3182 3291 -22 180 111 0 0 chr11 104892650 104892677 -45890876 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 283 256 0 39 chr11 104892677 104892755 -45890798 - L2 LINE L2 0 3313 3239 1379 224 54 9 chr11 104893317 104893648 -45889905 + MLT1A1 LTR MaLR 20 365 0 191 294 59 0 chr11 104893800 104893851 -45889702 + MIR SINE MIR 53 106 -156 454 293 23 23 chr11 104893910 104894084 -45889469 + MIR SINE MIR 47 220 -42 236 250 28 0 chr11 104894193 104894265 -45889288 + (TTA)n Simple_repeat Simple_repeat 2 75 0 360 282 160 13 chr11 104894356 104894512 -45889041 + MER5A DNA MER1_type 11 189 0 486 191 131 83 chr11 104894520 104894688 -45888865 - MER5B DNA MER1_type 0 178 3 502 245 34 14 chr11 104895285 104895432 -45888121 - Charlie8 DNA MER1_type -2223 194 45 538 289 174 0 chr11 104897050 104897251 -45886302 - MIR SINE MIR -7 255 20 230 315 81 0 chr11 104897504 104897615 -45885938 + L2 LINE L2 3153 3272 0 707 124 103 0 chr11 104897672 104897817 -45885736 - L1MB2 LINE L1 -4 6167 6008 216 315 101 0 chr11 104898324 104898413 -45885140 + L2 LINE L2 3107 3204 -68 272 261 25 59 chr11 104898576 104898695 -45884858 + L2 LINE L2 3199 3313 0 1690 196 10 0 chr11 104899073 104899374 -45884179 + AluJo SINE Alu 1 304 -8 189 312 97 25 chr11 104899404 104899641 -45883912 - L2 LINE L2 -439 2875 2622 22 35 0 0 chr11 104900676 104900705 -45882848 + AT_rich Low_complexity Low_complexity 1 29 0 201 254 56 14 chr11 104901238 104901309 -45882244 + L2 LINE L2 2548 2621 -693 2297 93 3 7 chr11 104901318 104901619 -45881934 - AluSx SINE Alu -2 310 11 585 211 58 26 chr11 104901717 104901873 -45881680 - MER112 DNA MER1_type -6 254 94 273 299 133 69 chr11 104901893 104902338 -45881215 + L2 LINE L2 2778 3248 -24 33 0 0 0 chr11 104902976 104903009 -45880544 + GC_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr11 104903388 104903420 -45880133 + GC_rich Low_complexity Low_complexity 1 32 0 231 280 33 29 chr11 104903879 104903991 -45879562 - MIR SINE MIR -62 146 54 182 284 62 0 chr11 104904540 104904621 -45878932 + MIR SINE MIR 49 134 -128 290 228 362 7 chr11 104905053 104905202 -45878351 + MIR SINE MIR 34 235 -27 185 337 36 0 chr11 104905317 104905400 -45878153 - L2 LINE L2 -241 3031 2946 300 316 43 92 chr11 104906419 104906856 -45876697 + L2 LINE L2 2804 3219 -53 199 389 70 5 chr11 104906935 104907120 -45876433 - L3 LINE CR1 -113 1464 1268 57 16 0 0 chr11 104907340 104907404 -45876149 + AT_rich Low_complexity Low_complexity 1 64 0 274 252 108 9 chr11 104907416 104907527 -45876026 - MIR SINE MIR -62 200 79 342 326 160 0 chr11 104908050 104908225 -45875328 + MIR SINE MIR 53 255 -7 267 31 0 0 chr11 104908265 104908297 -45875256 + (CA)n Simple_repeat Simple_repeat 1 32 0 536 219 167 24 chr11 104908927 104909137 -45874416 - MIR SINE MIR -6 256 17 234 0 0 0 chr11 104909516 104909542 -45874011 + (T)n Simple_repeat Simple_repeat 1 26 0 1562 252 100 27 chr11 104910009 104910172 -45873381 - L2 LINE L2 0 3313 3163 1847 156 31 3 chr11 104910172 104910460 -45873093 + AluJb SINE Alu 2 297 -15 1562 252 100 27 chr11 104910460 104911206 -45872347 - L2 LINE L2 -150 3163 2348 1674 170 29 38 chr11 104911207 104911231 -45872322 + L1MA10 LINE L1 5949 5972 -362 1269 158 63 9 chr11 104911231 104911452 -45872101 - MER46A DNA MER2_type -2 234 2 1674 170 29 38 chr11 104911452 104911769 -45871784 + L1MA10 LINE L1 5972 6287 -47 293 183 125 39 chr11 104911755 104911859 -45871694 + L1MA10 LINE L1 6213 6325 -9 * 590 246 56 47 chr11 104911947 104912162 -45871391 - MIR SINE MIR -15 247 31 201 276 53 65 chr11 104913604 104913774 -45869779 + L2 LINE L2 2727 2894 -420 1892 129 19 42 chr11 104913778 104914088 -45869465 - AluJb SINE Alu -9 303 1 198 0 0 0 chr11 104914158 104914180 -45869373 + (T)n Simple_repeat Simple_repeat 1 22 0 217 354 0 13 chr11 104914301 104914380 -45869173 + L2 LINE L2 3145 3222 -50 1297 199 5 0 chr11 104914384 104914600 -45868953 - MER58A DNA MER1_type -7 217 1 291 324 96 7 chr11 104915362 104915498 -45868055 - MIR3 SINE MIR -59 149 2 2292 101 0 0 chr11 104915683 104915970 -45867583 + AluSx SINE Alu 1 287 -25 207 0 0 0 chr11 104915973 104915996 -45867557 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 288 0 0 0 chr11 104916394 104916426 -45867127 + (TG)n Simple_repeat Simple_repeat 2 33 0 192 200 0 0 chr11 104916589 104916634 -45866919 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 479 280 95 15 chr11 104916921 104917121 -45866432 + MIR SINE MIR 9 224 -38 1783 157 17 7 chr11 104917459 104917759 -45865794 + AluJb SINE Alu 5 307 -5 357 195 13 13 chr11 104918414 104918491 -45865062 - LTR33 LTR ERVL -1 520 444 1471 182 88 12 chr11 104918491 104918701 -45864852 + MER2 DNA MER2_type 1 245 -100 2260 92 43 17 chr11 104918701 104919048 -45864505 - L1PA10 LINE L1 0 6168 5813 1471 182 88 12 chr11 104919048 104919156 -45864397 + MER2 DNA MER2_type 245 343 -2 539 212 215 111 chr11 104919156 104919524 -45864029 - LTR33 LTR ERVL -113 408 1 348 230 24 91 chr11 104920121 104920286 -45863267 + MER5A DNA MER1_type 36 189 0 230 188 0 21 chr11 104920402 104920450 -45863103 - MER5B DNA MER1_type -22 156 110 946 72 0 40 chr11 104920495 104920647 -45862906 + AluY SINE Alu 158 303 -8 350 113 99 0 chr11 104920647 104920718 -45862835 - MER5B DNA MER1_type -96 82 5 2327 62 0 26 chr11 104920955 104921259 -45862294 - AluSg SINE Alu -14 296 1 291 28 0 0 chr11 104921787 104921823 -45861730 + (CA)n Simple_repeat Simple_repeat 2 37 0 212 292 150 0 chr11 104922440 104922560 -45860993 - L3 LINE CR1 -18 1559 1422 184 242 65 16 chr11 104922675 104922737 -45860816 + MIR SINE MIR 128 192 -70 291 54 0 0 chr11 104923865 104923902 -45859651 + (TG)n Simple_repeat Simple_repeat 1 37 0 3666 112 44 0 chr11 104924590 104925092 -45858461 - MER1A DNA MER1_type -5 524 1 425 330 75 0 chr11 104925613 104925786 -45857767 + MIR SINE MIR 7 192 -70 352 324 9 0 chr11 104926207 104926312 -45857241 + MIR SINE MIR 5 110 -152 6584 99 10 32 chr11 104926312 104926325 -45857228 - L1MA2 LINE L1 0 6304 6292 478 64 0 39 chr11 104926325 104926403 -45857150 - L1MA2 LINE L1 -1 6303 6229 6584 99 10 32 chr11 104926403 104927400 -45856153 - L1MA2 LINE L1 -12 6292 5316 205 171 0 0 chr11 104927400 104927435 -45856118 + (ATTG)n Simple_repeat Simple_repeat 4 38 0 1112 149 122 0 chr11 104927435 104927616 -45855937 - AluJb SINE Alu -26 286 84 22786 156 27 13 chr11 104927616 104930419 -45853134 - L1 LINE L1 -818 6747 3985 2154 123 3 0 chr11 104930419 104930711 -45852842 + AluSx SINE Alu 1 293 -19 22786 156 27 13 chr11 104930711 104934552 -45849001 - L1 LINE L1 -3580 3985 12 258 215 38 151 chr11 104934566 104934752 -45848801 + MIR SINE MIR 98 262 0 1899 112 6 67 chr11 104935517 104935830 -45847723 - AluSx SINE Alu -18 294 1 363 23 0 0 chr11 104935880 104935924 -45847629 + (CA)n Simple_repeat Simple_repeat 2 45 0 2446 71 0 0 chr11 104936201 104936495 -45847058 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr11 104936515 104936536 -45847017 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr11 104936880 104936902 -45846651 + (A)n Simple_repeat Simple_repeat 1 22 0 267 320 55 16 chr11 104937512 104937640 -45845913 + MIR SINE MIR 57 189 -73 204 326 0 21 chr11 104938259 104938354 -45845199 + CT-rich Low_complexity Low_complexity 16 108 0 198 0 0 0 chr11 104938735 104938757 -45844796 + (TTA)n Simple_repeat Simple_repeat 3 24 0 4911 37 0 0 chr11 104938757 104939325 -45844228 - L1PA4 LINE L1 -18 6137 5570 326 255 32 102 chr11 104939888 104939984 -45843569 - L1ME4a LINE L1 -217 5904 5830 1709 177 0 23 chr11 104939984 104940283 -45843270 - AluJb SINE Alu -20 292 1 326 255 32 102 chr11 104940283 104940402 -45843151 - L1ME4a LINE L1 -291 5830 5704 22 56 0 0 chr11 104940582 104940618 -45842935 + AT_rich Low_complexity Low_complexity 1 36 0 2250 119 0 0 chr11 104941062 104941356 -45842197 - AluSx SINE Alu -18 294 1 23 0 0 0 chr11 104943972 104943995 -45839558 + AT_rich Low_complexity Low_complexity 1 23 0 809 246 96 21 chr11 104946693 104946933 -45836620 + MIR SINE MIR 2 259 -3 305 202 34 76 chr11 104947404 104947523 -45836030 + MIR SINE MIR 78 191 -71 2669 43 0 0 chr11 104948819 104949120 -45834433 - AluY SINE Alu -10 301 1 935 195 23 77 chr11 104949402 104949623 -45833930 + MER63A DNA MER1_type 1 209 -1 3714 51 0 0 chr11 104949950 104950398 -45833155 - L1PA6 LINE L1 0 6154 5707 256 309 82 0 chr11 104950934 104951031 -45832522 - MLT1K LTR MaLR 0 588 484 283 307 39 31 chr11 104951206 104951333 -45832220 - MLT1K LTR MaLR -314 274 147 475 207 141 121 chr11 104951527 104951725 -45831828 + MER102a DNA MER1_type 129 330 0 209 261 65 43 chr11 104951765 104951857 -45831696 - MIR SINE MIR -112 150 57 212 273 130 0 chr11 104951900 104951977 -45831576 - MER91B DNA MER1_type -103 87 1 244 326 0 63 chr11 104952343 104952438 -45831115 - MER5B DNA MER1_type 0 178 90 2859 218 55 21 chr11 104952444 104953237 -45830316 + L1ME1 LINE L1 5343 6162 -4 513 219 8 8 chr11 104953245 104953364 -45830189 - MER5B DNA MER1_type -49 129 11 319 262 0 57 chr11 104953988 104954110 -45829443 + MIR SINE MIR 91 205 -57 408 234 48 16 chr11 104954374 104954498 -45829055 - MIR SINE MIR -107 155 28 188 299 60 0 chr11 104960704 104960771 -45822782 - L2 LINE L2 -54 3218 3148 257 295 13 13 chr11 104961203 104961281 -45822272 + L3 LINE CR1 1495 1572 -5 1427 260 124 19 chr11 104961488 104962026 -45821527 - MLT1G1 LTR MaLR 0 595 1 330 291 178 9 chr11 104962326 104962539 -45821014 - MIR SINE MIR -6 256 8 461 241 53 0 chr11 104962542 104962675 -45820878 - LTR16A LTR ERVL 0 450 311 1077 57 38 0 chr11 104962787 104962946 -45820607 + (TATG)n Simple_repeat Simple_repeat 4 168 0 351 0 0 0 chr11 104963797 104963836 -45819717 + (TG)n Simple_repeat Simple_repeat 1 39 0 486 229 153 38 chr11 104965363 104965651 -45817902 - L2 LINE L2 -472 2842 2522 2298 56 0 21 chr11 104965658 104965946 -45817607 + AluY SINE Alu 1 282 -29 994 131 0 7 chr11 104965963 104966108 -45817445 + AluSg/x SINE Alu 118 261 -49 689 245 154 23 chr11 104966122 104966465 -45817088 - L2 LINE L2 -798 2516 2129 231 220 17 0 chr11 104966577 104966636 -45816917 + MIR SINE MIR 124 183 -79 467 276 89 2 chr11 104966881 104967096 -45816457 - MIR SINE MIR -18 244 11 183 301 48 55 chr11 104967286 104967432 -45816121 + L2 LINE L2 2919 3063 -209 213 234 114 2 chr11 104967656 104967727 -45815826 - MIR SINE MIR -67 141 64 475 237 0 132 chr11 104967730 104967882 -45815671 + FLAM_A SINE Alu 1 132 -1 294 342 133 19 chr11 104968431 104968753 -45814800 + L3 LINE CR1 549 907 -670 632 91 177 97 chr11 104969128 104969303 -45814250 + MER53 DNA DNA 1 189 0 411 38 0 0 chr11 104969545 104969598 -45813955 + (CA)n Simple_repeat Simple_repeat 2 54 0 290 182 61 15 chr11 104971243 104971309 -45812244 - L2 LINE L2 -36 3236 3168 686 284 22 4 chr11 104971356 104971581 -45811972 + MIR SINE MIR 1 229 -33 244 264 96 39 chr11 104971627 104971835 -45811718 - L2 LINE L2 -183 3089 2870 340 284 79 8 chr11 104971956 104972006 -45811547 - MIR SINE MIR -111 151 106 2165 102 0 0 chr11 104972006 104972289 -45811264 + AluSx SINE Alu 2 284 -28 340 284 79 8 chr11 104972289 104972365 -45811188 - MIR SINE MIR -156 106 16 2261 99 10 0 chr11 104973128 104973420 -45810133 - AluSx SINE Alu -17 295 1 242 297 50 50 chr11 104973426 104973608 -45809945 + L2 LINE L2 3098 3279 -34 239 266 0 78 chr11 104973604 104973732 -45809821 + L2 LINE L2 2040 2157 -1157 * 424 305 88 60 chr11 104973734 104974200 -45809353 + L2 LINE L2 2259 2742 -572 441 0 0 0 chr11 104974200 104974249 -45809304 + (CA)n Simple_repeat Simple_repeat 2 50 0 424 305 88 60 chr11 104974249 104974294 -45809259 + L2 LINE L2 2742 2784 -530 2000 109 0 90 chr11 104974294 104974616 -45808937 + AluSx SINE Alu 1 293 -19 2641 30 0 3 chr11 104975646 104975945 -45807608 + AluY SINE Alu 3 300 -11 416 216 108 9 chr11 104976233 104976344 -45807209 + L1ME LINE L1 5517 5638 -483 268 267 44 44 chr11 104976631 104976766 -45806787 - MER5A DNA MER1_type -21 168 34 215 268 46 59 chr11 104976635 104976788 -45806765 + MER5A DNA MER1_type 37 187 -2 * 310 308 19 0 chr11 104977324 104977431 -45806122 + MER5B DNA MER1_type 1 109 -69 280 303 76 23 chr11 104977529 104977661 -45805892 + MIR SINE MIR 47 185 -77 919 123 23 0 chr11 104977913 104978043 -45805510 - FLAM_C SINE Alu 0 133 1 192 303 22 56 chr11 104978465 104978554 -45804999 - MIR SINE MIR -131 131 46 30 27 0 0 chr11 104986952 104986989 -45796564 + AT_rich Low_complexity Low_complexity 1 37 0 25 75 0 0 chr11 104987280 104987333 -45796220 + AT_rich Low_complexity Low_complexity 1 53 0 2066 105 0 20 chr11 104987845 104988140 -45795413 - AluSx SINE Alu -23 289 1 22 0 0 0 chr11 104988150 104988172 -45795381 + AT_rich Low_complexity Low_complexity 1 22 0 2045 109 0 7 chr11 104988436 104988711 -45794842 + AluSq SINE Alu 2 274 -39 977 254 85 31 chr11 104989105 104989459 -45794094 - L2 LINE L2 0 3313 2941 * 1866 246 93 8 chr11 104989436 104989972 -45793581 - L2 LINE L2 -1308 2006 1425 2030 88 0 4 chr11 104992513 104992774 -45790779 - AluSg SINE Alu -17 293 34 309 250 0 0 chr11 104993062 104993130 -45790423 + L1ME3A LINE L1 6078 6145 -25 195 326 0 0 chr11 104993881 104993924 -45789629 - L2 LINE L2 -20 3252 3210 186 208 0 0 chr11 104995287 104995335 -45788218 + (TA)n Simple_repeat Simple_repeat 2 49 0 492 288 156 6 chr11 104995828 104995988 -45787565 + MER5A DNA MER1_type 6 189 0 215 192 19 19 chr11 104995993 104996045 -45787508 + L2 LINE L2 2301 2352 -962 489 348 109 10 chr11 104996353 104996554 -45786999 + L2 LINE L2 3048 3268 -4 21 0 0 0 chr11 104996889 104996910 -45786643 + AT_rich Low_complexity Low_complexity 1 21 0 1044 113 0 0 chr11 104996911 104997053 -45786500 + AluSg/x SINE Alu 159 300 -12 21 57 0 0 chr11 104998204 104998239 -45785314 + AT_rich Low_complexity Low_complexity 1 35 0 239 262 24 36 chr11 104999132 104999216 -45784337 - MIR3 SINE MIR -3 205 123 201 133 0 0 chr11 104999514 104999544 -45784009 + (TC)n Simple_repeat Simple_repeat 1 30 0 551 15 15 0 chr11 104999546 104999614 -45783939 + (TG)n Simple_repeat Simple_repeat 2 70 0 240 35 0 0 chr11 104999684 104999713 -45783840 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1720 105 54 4 chr11 104999837 105000114 -45783439 + L1MA5A LINE L1 6007 6297 0 243 308 19 10 chr11 105000168 105000272 -45783281 + L1 LINE L1 2382 2486 -3660 342 250 37 28 chr11 105000586 105000694 -45782859 - L1ME LINE L1 -477 5644 5536 433 318 38 42 chr11 105000717 105000978 -45782575 + L2 LINE L2 1778 2037 -1277 30 69 0 0 chr11 105001608 105001666 -45781887 + AT_rich Low_complexity Low_complexity 1 58 0 310 349 170 36 chr11 105001873 105002203 -45781350 + L2 LINE L2 2833 3206 -66 181 286 0 0 chr11 105002496 105002538 -45781015 - MIR SINE MIR -12 250 209 501 332 57 16 chr11 105002714 105002907 -45780646 - MIR3 SINE MIR 0 208 8 365 323 90 8 chr11 105005816 105005949 -45777604 - MIR3 SINE MIR -63 145 2 22 56 0 0 chr11 105006769 105006805 -45776748 + AT_rich Low_complexity Low_complexity 1 36 0 21 89 0 0 chr11 105007501 105007557 -45775996 + AT_rich Low_complexity Low_complexity 1 56 0 373 204 87 19 chr11 105007779 105007882 -45775671 - L2 LINE L2 -7 3306 3197 460 176 0 0 chr11 105008219 105008293 -45775260 + AluJ/FRAM SINE Alu 215 288 -24 22 35 0 0 chr11 105008454 105008483 -45775070 + AT_rich Low_complexity Low_complexity 1 29 0 292 196 0 0 chr11 105008798 105008849 -45774704 - L2 LINE L2 -1 3312 3262 551 260 28 59 chr11 105008963 105009217 -45774336 - L1ME LINE L1 -342 5779 5534 832 199 65 25 chr11 105009962 105010163 -45773390 - MER3 DNA MER1_type 0 209 1 893 186 38 19 chr11 105010468 105010678 -45772875 - L1MB1 LINE L1 -2 6166 5953 1094 90 0 0 chr11 105010799 105010944 -45772609 - AluSp/q SINE Alu -4 309 165 230 339 87 29 chr11 105011281 105011523 -45772030 + L2 LINE L2 2310 2565 -749 24 0 0 0 chr11 105011661 105011685 -45771868 + AT_rich Low_complexity Low_complexity 1 24 0 935 229 5 0 chr11 105012016 105012204 -45771349 - MER3 DNA MER1_type -20 189 1 28 0 0 0 chr11 105013044 105013072 -45770481 + AT_rich Low_complexity Low_complexity 1 28 0 323 167 50 0 chr11 105017100 105017160 -45766393 - Charlie1 DNA MER1_type -1 2760 2698 352 241 89 59 chr11 105017394 105017631 -45765922 + L1MC5 LINE L1 7677 7920 -41 2031 147 16 25 chr11 105017822 105018190 -45765363 + MLT1A1 LTR MaLR 1 365 0 198 394 65 19 chr11 105018636 105018946 -45764607 - L2 LINE L2 -588 2726 2403 378 0 0 0 chr11 105019729 105019771 -45763782 + (CA)n Simple_repeat Simple_repeat 2 43 0 1927 120 54 0 chr11 105020166 105020442 -45763111 - AluSg SINE Alu -19 291 1 26 30 0 0 chr11 105020972 105021005 -45762548 + AT_rich Low_complexity Low_complexity 1 33 0 244 0 56 0 chr11 105021184 105021220 -45762333 + (TTTTG)n Simple_repeat Simple_repeat 5 42 0 822 120 0 0 chr11 105021220 105021337 -45762216 - AluJb SINE Alu -195 117 1 28 29 0 0 chr11 105021614 105021649 -45761904 + AT_rich Low_complexity Low_complexity 1 35 0 6499 47 39 17 chr11 105021895 105023098 -45760455 + L1PA7 LINE L1 4602 5833 -321 2361 103 0 0 chr11 105023098 105023408 -45760145 + AluSq SINE Alu 1 310 -3 6499 47 39 17 chr11 105023408 105023731 -45759822 + L1PA7 LINE L1 5833 6148 -6 1582 218 10 0 chr11 105024480 105024788 -45758765 + LTR53 LTR ERVL 209 519 0 2177 85 0 14 chr11 105024862 105025144 -45758409 + AluSg SINE Alu 14 291 -19 24 32 0 0 chr11 105025452 105025483 -45758070 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr11 105025781 105025821 -45757732 + AT_rich Low_complexity Low_complexity 1 40 0 230 224 75 0 chr11 105026409 105026476 -45757077 - L1ME4a LINE L1 -84 6037 5966 260 276 172 9 chr11 105026520 105026636 -45756917 - L1ME4a LINE L1 -1919 5889 5755 24 32 0 0 chr11 105027971 105028002 -45755551 + AT_rich Low_complexity Low_complexity 1 31 0 717 187 50 39 chr11 105028518 105028700 -45754853 - MER5A DNA MER1_type -2 187 4 2613 36 3 0 chr11 105029179 105029487 -45754066 + AluYa5 SINE Alu 1 309 -2 2288 123 0 0 chr11 105030187 105030489 -45753064 + AluSg SINE Alu 1 302 -8 2247 107 0 3 chr11 105030732 105031031 -45752522 + AluSq SINE Alu 2 299 -14 270 180 66 0 chr11 105031582 105031643 -45751910 + MER58 DNA MER1_type 2355 2419 -1 2341 66 3 10 chr11 105032010 105032314 -45751239 - AluY SINE Alu -9 302 1 535 329 76 9 chr11 105034122 105034347 -45749206 + MIR SINE MIR 22 261 -1 2062 108 17 3 chr11 105034383 105034671 -45748882 + AluSx SINE Alu 1 292 -20 2174 178 118 6 chr11 105037157 105037707 -45745846 - Charlie1 DNA MER1_type -6 2755 2144 291 274 0 0 chr11 105037705 105037789 -45745764 + Charlie1 DNA MER1_type 1845 1928 -833 * 3288 219 51 6 chr11 105037889 105038679 -45744874 - Charlie1a DNA MER1_type -630 825 1 2185 95 0 55 chr11 105040538 105040865 -45742688 - AluSc SINE Alu 0 309 1 25 31 0 0 chr11 105042542 105042574 -45740979 + AT_rich Low_complexity Low_complexity 1 32 0 434 301 157 71 chr11 105044026 105044706 -45738847 + L1M2 LINE L1 541 1453 -5396 475 294 88 25 chr11 105047495 105047849 -45735704 - L1ME4a LINE L1 -188 5933 5558 241 339 97 8 chr11 105048076 105048200 -45735353 + L2 LINE L2 3138 3272 0 562 270 30 84 chr11 105049116 105049412 -45734141 + MER102a DNA MER1_type 49 328 -2 285 95 16 32 chr11 105049590 105049602 -45733951 + (TA)n Simple_repeat Simple_repeat 2 13 -50 2774 77 6 0 chr11 105049602 105049955 -45733598 + THE1A LTR MaLR 1 355 0 285 95 16 32 chr11 105049955 105050005 -45733548 + (TA)n Simple_repeat Simple_repeat 13 63 0 985 271 20 4 chr11 105050204 105050451 -45733102 + MIR SINE MIR 2 252 -10 590 261 22 17 chr11 105050496 105050676 -45732877 + MIR SINE MIR 81 261 -1 241 278 43 93 chr11 105050774 105050936 -45732617 + MIR3 SINE MIR 16 169 -39 1188 182 56 62 chr11 105050936 105051224 -45732329 - MER69 DNA AcHobo -5 2521 2234 2132 131 3 7 chr11 105051224 105051529 -45732024 - AluSx SINE Alu -8 304 1 1188 182 56 62 chr11 105051529 105051598 -45731955 - MER69 DNA AcHobo -292 2234 2166 * 1901 259 20 8 chr11 105051596 105052090 -45731463 - MER69 DNA AcHobo -726 500 1 180 0 0 0 chr11 105052389 105052409 -45731144 + (TA)n Simple_repeat Simple_repeat 1 20 0 346 270 107 119 chr11 105053479 105053731 -45729822 - L2 LINE L2 0 3272 3024 459 245 163 17 chr11 105054227 105054422 -45729131 - MIR SINE MIR -7 255 36 180 241 19 37 chr11 105054760 105054814 -45728739 - L2 LINE L2 -42 3230 3178 330 45 0 0 chr11 105056373 105056417 -45727136 + (TC)n Simple_repeat Simple_repeat 1 44 0 440 235 0 20 chr11 105056919 105057021 -45726532 + MIR SINE MIR 160 259 -3 427 259 0 26 chr11 105059307 105059423 -45724130 + L2 LINE L2 3191 3303 -10 26 0 0 0 chr11 105059796 105059822 -45723731 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr11 105059884 105059909 -45723644 + AT_rich Low_complexity Low_complexity 1 25 0 334 290 271 0 chr11 105060158 105060313 -45723240 - MIR SINE MIR -20 242 46 183 184 0 0 chr11 105062341 105062379 -45721174 + GA-rich Low_complexity Low_complexity 1 38 0 226 410 17 0 chr11 105062773 105062890 -45720663 - L2 LINE L2 -5 3267 3149 623 283 133 45 chr11 105062955 105063185 -45720368 - L3 LINE CR1 -669 908 639 2071 89 7 4 chr11 105063185 105063454 -45720099 + AluSx SINE Alu 31 300 -12 623 283 133 45 chr11 105063454 105063555 -45719998 - L3 LINE CR1 -938 639 548 185 343 29 14 chr11 105063563 105063633 -45719920 + L2 LINE L2 3025 3095 -177 207 333 11 69 chr11 105063705 105063792 -45719761 + L2 LINE L2 3221 3302 -11 2180 96 7 4 chr11 105063827 105064139 -45719414 - AluSc SINE Alu 0 313 1 328 271 54 132 chr11 105064760 105065018 -45718535 - MIR SINE MIR -9 253 16 255 152 22 0 chr11 105065043 105065089 -45718464 - MIR3 SINE MIR -7 201 155 1979 140 0 7 chr11 105065252 105065573 -45717980 - AluSx SINE Alu 0 312 4 186 373 27 18 chr11 105066922 105067032 -45716521 + MIR3 SINE MIR 8 118 -90 370 396 28 0 chr11 105067057 105067239 -45716314 + MIR SINE MIR 20 206 -56 1667 187 53 11 chr11 105070348 105070728 -45712825 + MLT1C LTR MaLR 72 467 0 254 304 33 11 chr11 105070772 105070864 -45712689 + MIR3 SINE MIR 83 176 -32 2159 94 16 26 chr11 105071262 105071570 -45711983 - AluY SINE Alu -6 305 1 233 369 0 78 chr11 105071637 105071690 -45711863 + L2 LINE L2 3143 3199 -73 1814 154 13 36 chr11 105071690 105071995 -45711558 - AluJb SINE Alu -14 298 1 1736 166 7 30 chr11 105071997 105072299 -45711254 - AluJb SINE Alu -17 295 1 233 369 0 78 chr11 105072299 105072383 -45711170 + L2 LINE L2 3200 3272 0 360 313 26 9 chr11 105073302 105073417 -45710136 - MIR SINE MIR -134 128 12 675 241 61 28 chr11 105073462 105073674 -45709879 - L2 LINE L2 0 3313 3095 416 282 54 13 chr11 105073685 105073834 -45709719 + MLT1E LTR MaLR 8 162 -431 237 260 10 42 chr11 105074479 105074575 -45708978 + L1ME LINE L1 5543 5635 -486 184 348 14 0 chr11 105074576 105074645 -45708908 + L2 LINE L2 3243 3312 -1 330 255 28 55 chr11 105074678 105074823 -45708730 + L1ME LINE L1 5678 5818 -303 2158 85 4 14 chr11 105075162 105075443 -45708110 - AluSg SINE Alu -19 291 14 1471 215 13 0 chr11 105075517 105075824 -45707729 - LTR53 LTR ERVL 0 519 209 3368 59 5 11 chr11 105076573 105077016 -45706537 - L1PA6 LINE L1 -8 6146 5707 225 254 0 0 chr11 105077552 105077607 -45705946 - MLT1K LTR MaLR 0 588 534 246 307 39 31 chr11 105077824 105077951 -45705602 - MLT1K LTR MaLR -314 274 147 407 207 141 121 chr11 105078145 105078343 -45705210 + MER102a DNA MER1_type 129 330 0 247 261 65 43 chr11 105078383 105078475 -45705078 - MIR SINE MIR -112 150 57 244 211 176 0 chr11 105078518 105078595 -45704958 - MER91C DNA MER1_type -63 77 1 272 326 0 63 chr11 105078961 105079056 -45704497 - MER5B DNA MER1_type 0 178 90 2572 212 58 24 chr11 105079062 105079855 -45703698 + L1ME1 LINE L1 5343 6162 -4 563 219 8 8 chr11 105079863 105079982 -45703571 - MER5B DNA MER1_type -49 129 11 368 254 0 57 chr11 105080604 105080726 -45702827 + MIR SINE MIR 91 205 -57 436 234 57 24 chr11 105080990 105081114 -45702439 - MIR SINE MIR -107 155 28 188 299 60 0 chr11 105087314 105087381 -45696172 - L2 LINE L2 -54 3218 3148 257 295 13 13 chr11 105087813 105087891 -45695662 + L3 LINE CR1 1495 1572 -5 1427 260 124 19 chr11 105088098 105088636 -45694917 - MLT1G1 LTR MaLR 0 595 1 330 291 178 9 chr11 105088936 105089149 -45694404 - MIR SINE MIR -6 256 8 461 241 53 0 chr11 105089152 105089285 -45694268 - LTR16A LTR ERVL 0 450 311 968 59 52 0 chr11 105089397 105089550 -45694003 + (TATG)n Simple_repeat Simple_repeat 4 164 0 351 0 0 0 chr11 105090401 105090440 -45693113 + (TG)n Simple_repeat Simple_repeat 1 39 0 486 229 153 38 chr11 105091965 105092253 -45691300 - L2 LINE L2 -472 2842 2522 2254 62 0 24 chr11 105092260 105092549 -45691004 + AluY SINE Alu 1 282 -29 994 131 0 7 chr11 105092566 105092711 -45690842 + AluSg/x SINE Alu 118 261 -49 688 241 161 24 chr11 105092725 105093066 -45690487 - L2 LINE L2 -798 2516 2129 231 220 17 0 chr11 105093178 105093237 -45690316 + MIR SINE MIR 124 183 -79 455 284 89 2 chr11 105093482 105093697 -45689856 - MIR SINE MIR -18 244 11 183 301 48 55 chr11 105093887 105094033 -45689520 + L2 LINE L2 2919 3063 -209 213 234 114 2 chr11 105094257 105094328 -45689225 - MIR SINE MIR -67 141 64 475 237 0 132 chr11 105094331 105094483 -45689070 + FLAM_A SINE Alu 1 132 -1 294 342 133 19 chr11 105095032 105095354 -45688199 + L3 LINE CR1 549 907 -670 632 91 177 97 chr11 105095729 105095904 -45687649 + MER53 DNA DNA 1 189 0 303 49 0 0 chr11 105096146 105096187 -45687366 + (CA)n Simple_repeat Simple_repeat 2 42 0 290 182 61 15 chr11 105097831 105097897 -45685656 - L2 LINE L2 -36 3236 3168 686 284 22 4 chr11 105097944 105098169 -45685384 + MIR SINE MIR 1 229 -33 244 264 96 39 chr11 105098215 105098423 -45685130 - L2 LINE L2 -183 3089 2870 340 284 79 8 chr11 105098544 105098594 -45684959 - MIR SINE MIR -111 151 106 2165 102 0 0 chr11 105098594 105098877 -45684676 + AluSx SINE Alu 2 284 -28 340 284 79 8 chr11 105098877 105098953 -45684600 - MIR SINE MIR -156 106 16 2288 102 7 0 chr11 105099717 105100010 -45683543 - AluSx SINE Alu -17 295 1 242 297 50 50 chr11 105100016 105100198 -45683355 + L2 LINE L2 3098 3279 -34 227 273 0 78 chr11 105100194 105100322 -45683231 + L2 LINE L2 2040 2157 -1157 * 424 305 88 60 chr11 105100324 105100790 -45682763 + L2 LINE L2 2259 2742 -572 477 0 0 0 chr11 105100790 105100843 -45682710 + (CA)n Simple_repeat Simple_repeat 2 54 0 424 305 88 60 chr11 105100843 105100888 -45682665 + L2 LINE L2 2742 2784 -530 2000 109 0 90 chr11 105100888 105101210 -45682343 + AluSx SINE Alu 1 293 -19 2560 34 3 3 chr11 105102239 105102536 -45681017 + AluY SINE Alu 3 299 -12 416 216 108 9 chr11 105102824 105102935 -45680618 + L1ME LINE L1 5517 5638 -483 268 267 44 44 chr11 105103222 105103357 -45680196 - MER5A DNA MER1_type -21 168 34 215 268 46 59 chr11 105103226 105103379 -45680174 + MER5A DNA MER1_type 37 187 -2 * 310 308 19 0 chr11 105103915 105104022 -45679531 + MER5B DNA MER1_type 1 109 -69 275 303 76 23 chr11 105104120 105104252 -45679301 + MIR SINE MIR 47 185 -77 898 131 23 0 chr11 105104504 105104634 -45678919 - FLAM_C SINE Alu 0 133 1 1402 118 11 0 chr11 105111746 105111933 -45671620 + AluSg SINE Alu 1 189 -121 1098 119 15 69 chr11 105112087 105112146 -45671407 - AluSx SINE Alu -121 191 130 2155 111 7 3 chr11 105112146 105112444 -45671109 - AluSx SINE Alu -13 299 1 1098 119 15 69 chr11 105112444 105112586 -45670967 - AluSx SINE Alu -182 130 1 327 25 0 0 chr11 105112635 105112675 -45670878 + (CA)n Simple_repeat Simple_repeat 2 41 0 2184 92 20 0 chr11 105112952 105113256 -45670297 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr11 105113630 105113652 -45669901 + AT_rich Low_complexity Low_complexity 1 22 0 267 320 55 16 chr11 105114257 105114385 -45669168 + MIR SINE MIR 57 189 -73 200 356 0 11 chr11 105115004 105115094 -45668459 + CT-rich Low_complexity Low_complexity 2 90 0 198 0 0 0 chr11 105115480 105115502 -45668051 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3547 53 0 2 chr11 105115502 105115933 -45667620 - L1PA5 LINE L1 -18 6136 5707 256 309 82 0 chr11 105116469 105116566 -45666987 - MLT1K LTR MaLR 0 588 484 283 307 39 31 chr11 105116741 105116868 -45666685 - MLT1K LTR MaLR -314 274 147 451 206 144 124 chr11 105117065 105117259 -45666294 + MER102a DNA MER1_type 133 330 0 209 261 65 43 chr11 105117299 105117391 -45666162 - MIR SINE MIR -112 150 57 212 273 130 0 chr11 105117434 105117511 -45666042 - MER91B DNA MER1_type -103 87 1 244 326 0 63 chr11 105117877 105117972 -45665581 - MER5B DNA MER1_type 0 178 90 2617 222 55 26 chr11 105117978 105118775 -45664778 + L1ME1 LINE L1 5343 6162 -4 513 219 8 8 chr11 105118783 105118902 -45664651 - MER5B DNA MER1_type -49 129 11 319 262 0 57 chr11 105119526 105119648 -45663905 + MIR SINE MIR 91 205 -57 399 234 57 24 chr11 105119912 105120036 -45663517 - MIR SINE MIR -107 155 28 325 312 91 42 chr11 105121877 105122262 -45661291 - L2 LINE L2 -652 2662 2259 227 273 0 78 chr11 105122264 105122392 -45661161 - L2 LINE L2 -1157 2157 2040 * 242 297 50 50 chr11 105122388 105122570 -45660983 - L2 LINE L2 -34 3279 3098 2288 102 7 0 chr11 105122576 105122869 -45660684 + AluSx SINE Alu 1 295 -17 340 284 79 8 chr11 105123633 105123709 -45659844 + MIR SINE MIR 16 106 -156 2165 102 0 0 chr11 105123709 105123992 -45659561 - AluSx SINE Alu -28 284 2 340 284 79 8 chr11 105123992 105124042 -45659511 + MIR SINE MIR 106 151 -111 244 264 96 39 chr11 105124163 105124371 -45659182 + L2 LINE L2 2870 3089 -183 686 284 22 4 chr11 105124417 105124642 -45658911 - MIR SINE MIR -33 229 1 290 182 61 15 chr11 105124689 105124755 -45658798 + L2 LINE L2 3168 3236 -36 303 49 0 0 chr11 105126399 105126440 -45657113 + (TG)n Simple_repeat Simple_repeat 2 42 0 638 92 178 92 chr11 105126682 105126856 -45656697 - MER53 DNA DNA 0 189 1 294 342 133 19 chr11 105127231 105127553 -45656000 - L3 LINE CR1 -670 907 549 475 237 0 132 chr11 105128102 105128254 -45655299 - FLAM_A SINE Alu -1 132 1 213 234 114 2 chr11 105128257 105128328 -45655225 + MIR SINE MIR 64 141 -67 183 301 48 55 chr11 105128552 105128698 -45654855 - L2 LINE L2 -209 3063 2919 455 284 89 2 chr11 105128888 105129103 -45654450 + MIR SINE MIR 11 244 -18 231 220 17 0 chr11 105129348 105129407 -45654146 - MIR SINE MIR -79 183 124 689 245 154 23 chr11 105129519 105129862 -45653691 + L2 LINE L2 2129 2516 -798 994 145 0 0 chr11 105129876 105130021 -45653532 - AluY SINE Alu -49 262 118 1042 56 0 0 chr11 105130038 105130163 -45653390 - AluY SINE Alu -29 282 158 230 188 0 21 chr11 105130210 105130258 -45653295 + MER5B DNA MER1_type 110 156 -22 348 230 24 91 chr11 105130374 105130539 -45653014 - MER5A DNA MER1_type 0 189 36 539 212 215 111 chr11 105131136 105131504 -45652049 + LTR33 LTR ERVL 1 408 -113 1471 182 88 12 chr11 105131504 105131612 -45651941 - MER2 DNA MER2_type -2 343 245 2260 92 43 17 chr11 105131612 105131959 -45651594 + L1PA10 LINE L1 5813 6168 0 1471 182 88 12 chr11 105131959 105132169 -45651384 - MER2 DNA MER2_type -100 245 1 357 195 13 13 chr11 105132169 105132246 -45651307 + LTR33 LTR ERVL 444 520 -1 1604 162 13 20 chr11 105132905 105133207 -45650346 - AluJb SINE Alu -8 304 5 536 280 95 15 chr11 105133545 105133745 -45649808 - MIR SINE MIR -38 224 9 198 309 73 0 chr11 105133818 105133873 -45649680 + L2 LINE L2 3137 3195 -77 192 200 0 0 chr11 105134032 105134077 -45649476 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 342 0 0 0 chr11 105134240 105134278 -45649275 + (CA)n Simple_repeat Simple_repeat 2 39 0 187 260 203 49 chr11 105134548 105134671 -45648882 - L3b LINE CR1 -111 1472 1331 207 0 0 0 chr11 105134678 105134701 -45648852 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2268 101 0 0 chr11 105134704 105134991 -45648562 - AluSx SINE Alu -25 287 1 244 0 56 0 chr11 105135226 105135262 -45648291 + (TTTTG)n Simple_repeat Simple_repeat 5 42 0 831 120 0 0 chr11 105135262 105135379 -45648174 - AluJb SINE Alu -195 117 1 28 29 0 0 chr11 105135656 105135691 -45647862 + AT_rich Low_complexity Low_complexity 1 35 0 5472 63 23 2 chr11 105135937 105137137 -45646416 + L1P3 LINE L1 4602 5824 -330 2359 103 0 0 chr11 105137140 105137441 -45646112 + AluSq SINE Alu 1 301 -12 370 216 108 9 chr11 105137729 105137840 -45645713 + L1ME LINE L1 5517 5638 -483 335 265 42 66 chr11 105138127 105138293 -45645260 - MER5A DNA MER1_type -21 168 7 316 288 16 40 chr11 105138821 105138946 -45644607 + MER5B DNA MER1_type 1 122 -56 336 303 76 23 chr11 105139024 105139156 -45644397 + MIR SINE MIR 47 185 -77 893 131 23 0 chr11 105139408 105139538 -45644015 - FLAM_C SINE Alu 0 133 1 185 303 22 56 chr11 105139960 105140049 -45643504 - MIR SINE MIR -131 131 46 2329 71 34 0 chr11 105143141 105143435 -45640118 - AluY SINE Alu -7 304 1 414 0 0 0 chr11 105143783 105143829 -45639724 + (CA)n Simple_repeat Simple_repeat 2 47 0 1023 274 0 4 chr11 105143927 105144164 -45639389 + MIR SINE MIR 5 240 -22 305 302 62 16 chr11 105144963 105145092 -45638461 + MIR SINE MIR 63 197 -65 367 299 114 22 chr11 105145892 105146076 -45637477 - MIR SINE MIR -10 252 52 1009 178 8 108 chr11 105146147 105146406 -45637147 + AluJb SINE Alu 1 233 -79 332 154 0 0 chr11 105146433 105146485 -45637068 - AluJ/FRAM SINE Alu -20 282 231 225 311 189 9 chr11 105146538 105146644 -45636909 - L2 LINE L2 0 3272 3148 401 327 81 27 chr11 105147184 105147407 -45636146 + MIR SINE MIR 4 238 -24 1693 177 0 35 chr11 105147416 105147727 -45635826 + AluJb SINE Alu 1 300 -12 371 268 49 32 chr11 105147872 105147995 -45635558 + L2 LINE L2 3189 3313 0 335 242 198 25 chr11 105149044 105149201 -45634352 - MIR SINE MIR 0 262 79 2231 137 51 56 chr11 105149726 105150156 -45633397 + MSTA LTR MaLR 1 428 0 330 241 171 88 chr11 105150816 105151032 -45632521 + L2 LINE L2 2729 2962 -352 216 0 0 0 chr11 105151066 105151090 -45632463 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 511 183 29 10 chr11 105151130 105151234 -45632319 + L2 LINE L2 3208 3313 0 572 205 39 77 chr11 105152071 105152305 -45631248 - MER112 DNA MER1_type -6 254 30 328 354 116 31 chr11 105152570 105153019 -45630534 + L2 LINE L2 1862 2348 -966 * 461 407 100 8 chr11 105153006 105153357 -45630196 + L2 LINE L2 2881 3263 -9 2234 122 7 0 chr11 105154364 105154658 -45628895 - AluY SINE Alu -15 296 1 419 210 168 8 chr11 105154726 105154845 -45628708 - MIR SINE MIR -62 200 63 6127 60 0 0 chr11 105155037 105155803 -45627750 + L1PA5 LINE L1 5389 6154 0 2170 153 13 8 chr11 105156026 105156399 -45627154 + THE1C LTR MaLR 1 375 0 347 235 12 0 chr11 105156466 105156547 -45627006 + MER117 DNA MER1_type 64 145 -52 706 322 42 10 chr11 105156686 105157060 -45626493 - MLT1I LTR MaLR 0 409 23 541 280 27 7 chr11 105157069 105157219 -45626334 + L2 LINE L2 2584 2736 -578 401 316 71 13 chr11 105158365 105158520 -45625033 - MIR3 SINE MIR -12 196 33 1068 217 72 79 chr11 105160319 105160761 -45622792 - LTR16A1 LTR ERVL 0 457 19 537 255 25 71 chr11 105160852 105161048 -45622505 - L2 LINE L2 -2 3311 3125 21 0 0 0 chr11 105161174 105161195 -45622358 + AT_rich Low_complexity Low_complexity 1 21 0 201 322 157 0 chr11 105161390 105161505 -45622048 - L2 LINE L2 0 3313 3181 272 340 237 0 chr11 105162669 105162766 -45620787 + L2 LINE L2 3137 3256 -16 329 294 15 44 chr11 105162964 105163100 -45620453 + MIR SINE MIR 20 151 -111 533 241 35 28 chr11 105163346 105163491 -45620062 + MIR SINE MIR 117 262 0 319 195 143 13 chr11 105164797 105164874 -45618679 - Tigger7 DNA MER2_type 0 2491 2405 * 1118 231 44 8 chr11 105164873 105165124 -45618429 - Tigger7 DNA MER2_type -2208 279 20 186 227 23 0 chr11 105165144 105165188 -45618365 + L3b LINE CR1 1190 1234 -349 1991 188 36 5 chr11 105165436 105165820 -45617733 + MSTD LTR MaLR 1 396 0 315 104 0 0 chr11 105166450 105166498 -45617055 + (TG)n Simple_repeat Simple_repeat 1 48 0 225 279 38 13 chr11 105166640 105166719 -45616834 - LTR16A1 LTR ERVL 0 457 377 380 371 84 0 chr11 105167134 105167312 -45616241 + L2 LINE L2 2552 2744 -570 384 59 0 0 chr11 105167651 105167702 -45615851 + (TGG)n Simple_repeat Simple_repeat 3 53 0 409 227 23 0 chr11 105168109 105168197 -45615356 + L2 LINE L2 3193 3282 -31 427 217 45 106 chr11 105168806 105168839 -45614714 - HAL1 LINE L1 -1428 1079 1046 2627 32 0 19 chr11 105168839 105169152 -45614401 - AluY SINE Alu -4 307 1 427 217 45 106 chr11 105169152 105169316 -45614237 - HAL1 LINE L1 -1461 1046 894 416 221 41 0 chr11 105169719 105169891 -45613662 + (TA)n Simple_repeat Simple_repeat 1 179 0 363 276 118 0 chr11 105170001 105170128 -45613425 - MIR SINE MIR -119 143 2 2228 108 7 0 chr11 105170286 105170592 -45612961 + AluSp SINE Alu 1 308 -5 411 350 116 41 chr11 105171391 105171805 -45611748 - L2 LINE L2 -2 3270 2826 470 279 32 32 chr11 105172057 105172211 -45611342 + MIR3 SINE MIR 6 159 -49 198 103 0 0 chr11 105173112 105173141 -45610412 + (T)n Simple_repeat Simple_repeat 1 29 0 290 317 87 30 chr11 105173792 105174022 -45609531 + L2 LINE L2 2804 3046 -226 347 342 26 0 chr11 105174461 105174578 -45608975 + L2 LINE L2 3194 3313 0 30 0 0 0 chr11 105175657 105175687 -45607866 + AT_rich Low_complexity Low_complexity 1 30 0 469 229 0 19 chr11 105175790 105175895 -45607658 - AluJb SINE Alu -76 236 134 1767 180 0 10 chr11 105175895 105176195 -45607358 - AluJb SINE Alu -15 297 1 288 169 0 0 chr11 105176198 105176257 -45607296 + L1MB7 LINE L1 6116 6174 -10 559 277 176 12 chr11 105176356 105176694 -45606859 - L2 LINE L2 -265 3048 2657 424 248 17 0 chr11 105177118 105177235 -45606318 - MIR SINE MIR 0 262 144 268 190 51 0 chr11 105177469 105177548 -45606005 + (TA)n Simple_repeat Simple_repeat 1 83 0 2444 97 55 5 chr11 105177620 105178000 -45605553 - MLT2A1 LTR ERVL -44 400 2 731 196 70 91 chr11 105178055 105178460 -45605093 - MLT1A1 LTR MaLR 0 396 6 22 0 0 0 chr11 105178931 105178953 -45604600 + AT_rich Low_complexity Low_complexity 1 22 0 278 226 176 10 chr11 105179808 105179910 -45603643 + L2 LINE L2 3153 3271 -1 941 209 29 68 chr11 105180081 105180392 -45603161 - L1MB7 LINE L1 -153 6031 5733 405 354 88 12 chr11 105180902 105181142 -45602411 - MIR SINE MIR 0 262 5 1980 103 46 25 chr11 105181862 105182166 -45601387 + AluSq SINE Alu 1 310 0 2129 201 49 7 chr11 105182442 105182889 -45600664 - MLT1C LTR MaLR 0 467 2 530 213 125 44 chr11 105183216 105183376 -45600177 + MER69A DNA AcHobo 2 174 -3 266 256 128 35 chr11 105184499 105184585 -45598968 - MIR SINE MIR -30 178 84 203 171 0 0 chr11 105185355 105185390 -45598163 + GA-rich Low_complexity Low_complexity 2 36 0 225 0 0 0 chr11 105185920 105185945 -45597608 + (A)n Simple_repeat Simple_repeat 1 25 0 384 241 97 68 chr11 105186559 105186766 -45596787 + MIR SINE MIR 49 261 -1 238 172 86 0 chr11 105187105 105187163 -45596390 - L2 LINE L2 -543 2771 2709 278 274 69 10 chr11 105187319 105187421 -45596132 + LTR67 LTR ERVL 427 534 -23 313 304 65 27 chr11 105187453 105187587 -45595966 - L2 LINE L2 -686 2628 2484 2305 145 2 42 chr11 105187587 105187993 -45595560 - MLT1B LTR MaLR 0 390 1 313 304 65 27 chr11 105187993 105188042 -45595511 - L2 LINE L2 -830 2484 2438 2079 125 0 0 chr11 105188913 105189209 -45594344 - AluSx SINE Alu -16 296 1 195 222 111 0 chr11 105190563 105190617 -45592936 - L3 LINE CR1 -1090 487 428 615 14 0 0 chr11 105190916 105190988 -45592565 + (CA)n Simple_repeat Simple_repeat 2 73 0 329 289 62 21 chr11 105191639 105191736 -45591817 + L2 LINE L2 3171 3271 -1 214 171 0 24 chr11 105193414 105193455 -45590098 + (CA)n Simple_repeat Simple_repeat 2 41 0 1264 138 18 64 chr11 105193470 105193752 -45589801 - L1MA10 LINE L1 -1 6333 6065 678 78 0 0 chr11 105193760 105193850 -45589703 - L1MA10 LINE L1 -536 5798 5709 290 281 110 0 chr11 105193933 105194015 -45589538 + L2 LINE L2 3181 3271 -1 706 302 35 50 chr11 105194196 105194537 -45589016 + L2 LINE L2 2971 3306 -7 507 309 66 47 chr11 105195356 105195612 -45587941 - MIR SINE MIR -1 261 1 250 259 47 59 chr11 105195655 105195740 -45587813 + MIR SINE MIR 31 114 -148 1603 164 0 21 chr11 105195967 105196248 -45587305 - AluJb SINE Alu -3 309 35 595 109 0 40 chr11 105196251 105196352 -45587201 + L1MA9 LINE L1 5984 6080 -232 267 298 48 35 chr11 105196441 105196558 -45586995 - MIR SINE MIR -87 121 2 1471 103 70 0 chr11 105197758 105197972 -45585581 - MER30 DNA MER1_type -1 229 1 353 218 132 76 chr11 105199294 105199507 -45584046 + MIR SINE MIR 8 234 -28 21 36 0 0 chr11 105199588 105199616 -45583937 + AT_rich Low_complexity Low_complexity 1 28 0 12820 185 26 16 chr11 105199623 105201930 -45581623 + L1 LINE L1 15 2346 -5219 13469 189 13 11 chr11 105202031 105204799 -45578754 + L1 LINE L1 3661 6432 -1133 338 346 44 7 chr11 105205565 105205701 -45577852 - L2 LINE L2 -17 3255 3115 189 290 69 48 chr11 105206066 105206211 -45577342 + L2 LINE L2 2829 2976 -296 584 204 61 77 chr11 105206477 105206658 -45576895 + MER5B DNA MER1_type 1 178 0 288 300 44 0 chr11 105206684 105206774 -45576779 + MIR SINE MIR 168 261 -1 260 245 0 0 chr11 105206809 105206862 -45576691 + L2 LINE L2 3261 3313 0 616 206 30 85 chr11 105206962 105207127 -45576426 + MER97a DNA MER1_type? 21 176 -718 21 0 0 0 chr11 105207276 105207297 -45576256 + AT_rich Low_complexity Low_complexity 1 21 0 243 332 186 29 chr11 105207698 105208074 -45575479 + L2 LINE L2 2838 3272 0 289 330 83 0 chr11 105208132 105208241 -45575312 + L2 LINE L2 3191 3308 -5 207 329 13 13 chr11 105208588 105208664 -45574889 + MER5A DNA MER1_type 114 189 0 906 224 69 26 chr11 105208666 105208898 -45574655 + MIR SINE MIR 13 254 -8 319 310 9 9 chr11 105209148 105209264 -45574289 + MIR3 SINE MIR 83 198 -10 317 228 18 114 chr11 105211125 105211239 -45572314 - MIR SINE MIR -112 150 48 653 308 18 0 chr11 105211329 105211498 -45572055 - MIR SINE MIR -71 191 20 792 178 129 0 chr11 105213579 105213742 -45569811 - MER20 DNA MER1_type -1 218 35 195 42 0 0 chr11 105214435 105214459 -45569094 + (TAA)n Simple_repeat Simple_repeat 3 26 0 426 252 59 0 chr11 105214460 105214579 -45568974 - MIR SINE MIR -8 254 129 691 184 14 41 chr11 105214580 105214727 -45568826 - L2 LINE L2 -5 3308 3166 1151 251 113 52 chr11 105215708 105216282 -45567271 - MLT1L LTR MaLR -6 609 1 410 329 67 7 chr11 105216889 105217038 -45566515 - L2 LINE L2 -4 3268 3111 26 30 0 0 chr11 105217207 105217240 -45566313 + AT_rich Low_complexity Low_complexity 1 33 0 649 266 109 41 chr11 105217711 105218049 -45565504 + MLT1L LTR MaLR 253 613 -2 2014 154 86 28 chr11 105218659 105218749 -45564804 - L1MB2 LINE L1 -39 6132 6049 2320 154 97 43 chr11 105218749 105219242 -45564311 + MLT2B1 LTR ERVL 1 520 0 2014 154 86 28 chr11 105219242 105219546 -45564007 - L1MB2 LINE L1 -122 6049 5715 2027 113 62 108 chr11 105220168 105220638 -45562915 + LTR7 LTR ERV1 1 448 -2 20413 93 17 31 chr11 105220640 105223677 -45559876 + HERVH LTR ERV1 1 2995 -4718 886 142 20 0 chr11 105223662 105223810 -45559743 + HERVH LTR ERV1 3140 3290 -4423 * 29986 73 4 3 chr11 105223800 105228082 -45555471 + HERVH LTR ERV1 3492 7713 0 1946 115 64 109 chr11 105228082 105228551 -45555002 + LTR7 LTR ERV1 1 448 -2 2099 60 67 0 chr11 105228750 105229032 -45554521 - AluY SINE Alu -10 301 1 309 255 71 10 chr11 105229281 105229379 -45554174 - MIR SINE MIR -115 147 44 519 252 82 0 chr11 105229418 105229577 -45553976 + MIR SINE MIR 90 261 -1 195 184 0 0 chr11 105229646 105229684 -45553869 + A-rich Low_complexity Low_complexity 1 38 0 6503 64 11 39 chr11 105230971 105231955 -45551598 - SVA Other Other 0 1386 430 5165 67 37 52 chr11 105231966 105232892 -45550661 - SVA Other Other -520 866 57 852 37 0 0 chr11 105232892 105233000 -45550553 + (GGGAGA)n Simple_repeat Simple_repeat 1 108 0 755 181 93 0 chr11 105233125 105233329 -45550224 + L1 LINE L1 5054 5276 -870 1334 276 89 11 chr11 105233436 105233885 -45549668 - LTR33 LTR ERVL -22 499 16 180 370 12 12 chr11 105234181 105234262 -45549291 + MIR SINE MIR 36 116 -146 186 103 0 0 chr11 105234277 105234306 -45549247 + L3 LINE CR1 1548 1576 -1 4024 139 48 3 chr11 105234732 105235394 -45548159 - L1MA5A LINE L1 0 6297 5606 2132 133 3 0 chr11 105235394 105235703 -45547850 - AluSx SINE Alu -2 310 1 333 328 16 24 chr11 105237048 105237173 -45546380 - MIR SINE MIR -68 140 17 207 291 63 97 chr11 105237971 105238177 -45545376 - L2 LINE L2 -237 3035 2837 450 169 225 21 chr11 105239702 105239844 -45543709 - MIR SINE MIR -59 203 33 366 261 9 45 chr11 105239931 105240042 -45543511 + MIR SINE MIR 30 136 -126 347 226 97 11 chr11 105240754 105240847 -45542706 + L2 LINE L2 3170 3270 -2 198 204 82 0 chr11 105241850 105241899 -45541654 + L2 LINE L2 2934 2986 -327 383 261 22 0 chr11 105242156 105242248 -45541305 + L2 LINE L2 3136 3229 -43 742 282 68 20 chr11 105242298 105242546 -45541007 - MIR SINE MIR -1 261 2 320 317 233 0 chr11 105243638 105243840 -45539713 + MIR SINE MIR 1 249 -13 280 262 100 96 chr11 105243950 105244221 -45539332 - L2 LINE L2 -173 3099 2828 229 204 42 156 chr11 105244934 105245101 -45538452 - MER5B DNA MER1_type -30 148 1 394 283 128 22 chr11 105245175 105245355 -45538198 - L2 LINE L2 -6 3307 3109 318 286 77 44 chr11 105245359 105245541 -45538012 + L2 LINE L2 1803 1990 -1324 563 199 53 64 chr11 105245556 105245727 -45537826 - MIR SINE MIR -37 225 57 326 368 19 0 chr11 105246060 105246166 -45537387 - L2 LINE L2 -27 3245 3138 187 347 248 6 chr11 105246177 105246520 -45537033 + L2 LINE L2 2325 2750 -564 234 233 29 78 chr11 105246808 105246911 -45536642 + MLT1K LTR MaLR 424 521 -67 740 246 24 0 chr11 105246914 105247081 -45536472 + MIR SINE MIR 52 222 -40 195 353 90 16 chr11 105247383 105247505 -45536048 + MIR3 SINE MIR 14 144 -64 2616 148 54 5 chr11 105247620 105248026 -45535527 - MSTB LTR MaLR 0 426 1 321 229 83 96 chr11 105249219 105249459 -45534094 - L1MC4a LINE L1 -140 5981 5743 454 307 123 31 chr11 105249465 105250702 -45532851 - L1MC4a LINE L1 -404 5717 4373 493 282 90 5 chr11 105251728 105251916 -45531637 - MIR SINE MIR -40 222 19 355 189 0 21 chr11 105253076 105253171 -45530382 + GA-rich Low_complexity Low_complexity 4 96 0 2438 70 0 3 chr11 105253381 105253682 -45529871 + AluY SINE Alu 1 300 -11 378 298 84 67 chr11 105253974 105254261 -45529292 - L2 LINE L2 -174 3098 2797 471 209 174 9 chr11 105254261 105254376 -45529177 + MER94 DNA DNA 1 134 0 378 298 84 67 chr11 105254376 105254488 -45529065 - L2 LINE L2 -475 2797 2688 386 267 73 52 chr11 105254557 105254789 -45528764 - L2 LINE L2 0 3313 3077 451 293 123 41 chr11 105255263 105255604 -45527949 - L2 LINE L2 -382 2932 2564 382 254 41 17 chr11 105255639 105255784 -45527769 + MLT1J2 LTR MaLR 68 219 -190 250 249 86 0 chr11 105255845 105255944 -45527609 + MLT1I LTR MaLR 317 409 0 285 321 27 33 chr11 105255944 105256128 -45527425 - L2 LINE L2 -735 2579 2397 1466 192 150 53 chr11 105256573 105257055 -45526498 - MLT1F1 LTR MaLR 0 567 38 575 174 9 0 chr11 105257507 105257622 -45525931 + CT-rich Low_complexity Low_complexity 3 118 0 589 340 82 8 chr11 105257672 105257916 -45525637 + MIR SINE MIR 1 262 0 203 282 42 0 chr11 105258070 105258141 -45525412 + CT-rich Low_complexity Low_complexity 5 78 0 2074 109 0 60 chr11 105258532 105258863 -45524690 + AluSx SINE Alu 1 311 -1 1000 258 96 51 chr11 105259464 105259859 -45523694 + LTR16A LTR ERVL 31 443 -7 580 288 43 11 chr11 105259902 105260086 -45523467 - MIR SINE MIR -26 236 47 537 305 50 94 chr11 105261291 105261632 -45521921 - L2 LINE L2 -9 3263 2938 1023 166 90 57 chr11 105261729 105261940 -45521613 - MER20 DNA MER1_type -1 218 1 642 254 89 32 chr11 105262040 105262288 -45521265 - L2 LINE L2 0 3313 3052 346 290 79 97 chr11 105262508 105262787 -45520766 - L2 LINE L2 -43 3229 2956 503 167 21 21 chr11 105262926 105263022 -45520531 + MIR3 SINE MIR 113 208 0 2480 73 0 0 chr11 105264716 105265017 -45518536 + AluY SINE Alu 1 301 -10 189 0 0 0 chr11 105265139 105265160 -45518393 + (A)n Simple_repeat Simple_repeat 1 21 0 1032 247 84 0 chr11 105265416 105265655 -45517898 + MIR SINE MIR 2 260 -2 256 140 60 0 chr11 105266296 105266346 -45517207 - L2 LINE L2 0 3313 3261 536 340 61 25 chr11 105266682 105267076 -45516477 - ERVL LTR ERVL -660 5104 4697 495 298 18 6 chr11 105267094 105267265 -45516288 - LTR16B LTR ERVL -4 460 288 361 250 12 0 chr11 105267520 105267600 -45515953 - L2 LINE L2 -49 3223 3143 542 231 108 42 chr11 105267719 105267931 -45515622 + MIR SINE MIR 9 234 -28 491 351 15 5 chr11 105268954 105269159 -45514394 - MIR SINE MIR -15 247 41 355 369 101 24 chr11 105269207 105269714 -45513839 + L2 LINE L2 2412 2957 -357 186 103 0 0 chr11 105270554 105270583 -45512970 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 190 150 125 0 chr11 105271023 105271063 -45512490 - L2 LINE L2 -18 3295 3251 * 336 224 71 20 chr11 105271032 105271130 -45512423 - MIR SINE MIR -24 238 136 466 318 109 7 chr11 105271194 105271401 -45512152 - MIR SINE MIR -29 233 8 563 271 52 21 chr11 105271775 105271942 -45511611 + L1MDa LINE L1 34 209 -6331 1888 215 39 28 chr11 105271942 105272332 -45511221 - MSTD LTR MaLR -2 394 1 563 271 52 21 chr11 105272332 105272356 -45511197 + L1MDa LINE L1 209 231 -6309 * 2248 241 34 4 chr11 105272346 105272840 -45510713 - MSTD-int LTR MaLR -15 1720 1212 889 180 16 46 chr11 105272836 105273030 -45510523 - MSTD-int LTR MaLR -1546 189 2 * 2384 201 5 0 chr11 105273032 105273426 -45510127 - MSTD LTR MaLR 0 396 1 375 268 12 0 chr11 105273427 105273509 -45510044 + L1MDa LINE L1 197 279 -6261 5858 218 38 31 chr11 105273894 105274354 -45509199 + L1MDa LINE L1 847 1302 -5238 1651 155 0 4 chr11 105274354 105274599 -45508954 + AluSx SINE Alu 6 249 -63 5858 218 38 31 chr11 105274599 105275102 -45508451 + L1MDa LINE L1 1302 1800 -4740 2035 133 0 0 chr11 105275102 105275537 -45508016 + AluSx SINE Alu 1 435 0 5858 218 38 31 chr11 105275537 105277905 -45505648 + L1MDa LINE L1 1800 4176 -2364 21 0 0 0 chr11 105278742 105278763 -45504790 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr11 105278905 105278928 -45504625 + AT_rich Low_complexity Low_complexity 1 23 0 928 158 0 0 chr11 105279276 105279409 -45504144 - FLAM_C SINE Alu 0 133 1 305 292 117 29 chr11 105279488 105279659 -45503894 + MIR SINE MIR 28 213 -49 340 316 7 53 chr11 105279698 105279850 -45503703 + MIR SINE MIR 85 229 -33 22 0 0 0 chr11 105279926 105279948 -45503605 + AT_rich Low_complexity Low_complexity 1 22 0 195 243 0 0 chr11 105280651 105280688 -45502865 + MIR SINE MIR 195 231 -31 1861 149 7 17 chr11 105280727 105281022 -45502531 - AluJo SINE Alu -20 292 1 405 236 12 141 chr11 105281698 105281826 -45501727 - L2 LINE L2 0 3313 3229 1069 179 46 5 chr11 105281826 105282022 -45501531 - MER3 DNA MER1_type -1 208 5 405 236 12 141 chr11 105282022 105282135 -45501418 - L2 LINE L2 -84 3229 3103 709 226 33 35 chr11 105282485 105282727 -45500826 - L2 LINE L2 -283 3030 2789 1182 222 148 74 chr11 105282769 105283242 -45500311 - MLT1H LTR MaLR -37 512 5 2293 276 84 11 chr11 105283245 105283996 -45499557 - L2 LINE L2 -521 2793 1988 1264 233 51 13 chr11 105287696 105288009 -45495544 - MLT1J2 LTR MaLR -125 325 1 655 291 37 11 chr11 105288011 105288200 -45495353 - MIR SINE MIR -63 199 6 202 231 0 0 chr11 105288218 105288257 -45495296 + T-rich Low_complexity Low_complexity 5 43 0 452 267 46 8 chr11 105288337 105288468 -45495085 - MIR SINE MIR -59 203 68 356 306 96 13 chr11 105289506 105289663 -45493890 - MIR3 SINE MIR -33 175 6 426 260 108 67 chr11 105289866 105290135 -45493418 + MLT1J LTR MaLR 230 509 -2 183 42 0 0 chr11 105290164 105290188 -45493365 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 722 206 78 49 chr11 105290823 105291027 -45492526 + MER63A DNA MER1_type 1 210 0 289 324 59 29 chr11 105291044 105291214 -45492339 - MIR SINE MIR -75 187 13 208 258 16 0 chr11 105291219 105291281 -45492272 + A-rich Low_complexity Low_complexity 2 64 0 358 239 109 11 chr11 105291337 105291429 -45492124 + MER58 DNA MER1_type 1 101 -114 44129 29 22 1 chr11 105291430 105297303 -45486250 + L1HS LINE L1 2 5998 -157 1030 264 118 37 chr11 105298028 105298493 -45485060 + LTR33A LTR ERVL 4 506 -17 368 291 23 70 chr11 105298500 105298512 -45485041 - MIR SINE MIR -90 172 161 1665 235 11 21 chr11 105298512 105298890 -45484663 - MLT1A2 LTR MaLR 0 374 1 368 291 23 70 chr11 105298890 105299049 -45484504 - MIR SINE MIR -101 161 9 299 296 9 52 chr11 105299305 105299420 -45484133 - MIR SINE MIR -79 129 20 6941 160 114 40 chr11 105300537 105302004 -45481549 - MER52A LTR ERV1 0 1755 180 332 238 16 0 chr11 105302005 105302068 -45481485 - MER52A LTR ERV1 -1691 64 1 1283 223 57 37 chr11 105302732 105303220 -45480333 + MLT1E LTR MaLR 1 593 0 2110 153 46 0 chr11 105303578 105303904 -45479649 - MER2 DNA MER2_type -3 341 1 292 292 15 105 chr11 105304077 105304344 -45479209 - L2 LINE L2 -192 3080 2838 497 283 7 7 chr11 105304847 105304999 -45478554 - L1ME2 LINE L1 -9 6155 6004 186 43 0 0 chr11 105305013 105305036 -45478517 + (T)n Simple_repeat Simple_repeat 1 23 0 315 0 0 0 chr11 105305420 105305455 -45478098 + (TG)n Simple_repeat Simple_repeat 1 35 0 205 300 0 14 chr11 105305455 105305525 -45478028 + GA-rich Low_complexity Low_complexity 4 72 0 211 292 45 11 chr11 105305724 105305813 -45477740 + MIR SINE MIR 81 172 -90 30 0 0 0 chr11 105306181 105306211 -45477342 + AT_rich Low_complexity Low_complexity 1 30 0 1053 271 95 68 chr11 105306345 105308408 -45475145 - L1ME3A LINE L1 -96 6025 3876 851 249 135 34 chr11 105308450 105308835 -45474718 + MLT1J1 LTR MaLR 5 428 -18 1006 271 149 36 chr11 105308854 105309776 -45473777 - L1ME3A LINE L1 -2334 3812 2787 361 294 34 25 chr11 105309878 105309997 -45473556 - MIR3 SINE MIR -76 132 13 196 29 0 57 chr11 105310048 105310083 -45473470 + (TA)n Simple_repeat Simple_repeat 1 33 0 1736 159 10 17 chr11 105310592 105310888 -45472665 + AluJo SINE Alu 1 294 -18 474 308 87 44 chr11 105311387 105311708 -45471845 + HAL1 LINE L1 496 830 -1677 738 209 103 43 chr11 105311712 105311946 -45471607 + L1M4 LINE L1 4860 5107 -1039 836 88 15 88 chr11 105312015 105312152 -45471401 + Tigger5 DNA MER2_type 2197 2323 0 1516 314 75 37 chr11 105312153 105313145 -45470408 - L2 LINE L2 -116 3197 2161 495 88 135 188 chr11 105313145 105313337 -45470216 - MER33 DNA MER1_type -2 322 141 886 196 0 0 chr11 105313341 105313499 -45470054 - FRAM SINE Alu -18 158 1 347 168 271 9 chr11 105313500 105313607 -45469946 - MER33 DNA MER1_type -181 143 9 1267 318 148 19 chr11 105313607 105314412 -45469141 - L2 LINE L2 -1535 1779 871 503 170 21 0 chr11 105314516 105314610 -45468943 + L1MD1 LINE L1 6147 6242 0 223 264 28 28 chr11 105314943 105315015 -45468538 - MIR SINE MIR -180 82 11 1635 239 85 55 chr11 105315323 105315925 -45467628 - L1MB7 LINE L1 -9 6175 5556 21 36 0 0 chr11 105315929 105315957 -45467596 + AT_rich Low_complexity Low_complexity 1 28 0 6614 65 21 6 chr11 105316101 105316965 -45466588 - L1PA8 LINE L1 -8 6164 5288 2208 63 0 11 chr11 105317019 105317290 -45466263 - AluY SINE Alu -14 297 30 347 187 0 0 chr11 105317449 105317524 -45466029 - L1MA10 LINE L1 -3 6331 6257 2622 79 6 3 chr11 105317537 105317878 -45465675 - L1PB1 LINE L1 -2 6149 5808 685 175 168 0 chr11 105318555 105318698 -45464855 - MER46B DNA MER2_type -194 42 1 289 182 18 0 chr11 105318651 105318706 -45464847 + MER46A DNA MER2_type 97 152 -84 * 377 246 16 63 chr11 105318706 105318832 -45464721 - MIR SINE MIR -96 166 47 310 206 27 55 chr11 105319127 105319200 -45464353 - L2 LINE L2 -54 3218 3148 241 291 171 34 chr11 105319921 105320096 -45463457 + L2 LINE L2 141 339 -2975 203 298 96 39 chr11 105320105 105320209 -45463344 + MER91C DNA MER1_type 31 140 0 191 359 161 5 chr11 105320261 105320484 -45463069 + L2 LINE L2 466 723 -2591 253 167 0 0 chr11 105320584 105320632 -45462921 - L1P5 LINE L1 -326 6544 6497 258 178 53 46 chr11 105320632 105320784 -45462769 + (TA)n Simple_repeat Simple_repeat 1 153 0 3983 128 5 119 chr11 105320784 105320805 -45462748 - L1P5 LINE L1 -360 6507 6485 183 80 0 0 chr11 105320805 105320830 -45462723 + (TG)n Simple_repeat Simple_repeat 1 25 0 3983 128 5 119 chr11 105320830 105322509 -45461044 - L1P5 LINE L1 -382 6485 5017 * 5340 116 88 8 chr11 105322504 105324030 -45459523 - L1P5 LINE L1 -4722 2141 232 1582 241 15 0 chr11 105324033 105324361 -45459192 - L1ME1 LINE L1 -332 5903 5571 2337 250 83 7 chr11 105324368 105325067 -45458486 - L1ME1 LINE L1 -5358 1038 287 808 289 40 31 chr11 105325077 105325500 -45458053 - L1MC/D LINE L1 -698 5468 5366 187 313 15 45 chr11 105326123 105326190 -45457363 + L3 LINE CR1 1499 1563 -14 365 298 142 24 chr11 105326601 105326806 -45456747 - MIR SINE MIR 0 262 34 183 129 0 0 chr11 105327188 105327219 -45456334 + (CA)n Simple_repeat Simple_repeat 1 31 0 263 296 153 0 chr11 105327873 105327971 -45455582 - MIR SINE MIR -64 144 32 251 161 0 48 chr11 105328092 105328154 -45455399 + CT-rich Low_complexity Low_complexity 3 61 0 14868 59 5 6 chr11 105328278 105330710 -45452843 + L1PA6 LINE L1 3478 5903 -251 263 321 188 18 chr11 105331754 105331978 -45451575 + MIR SINE MIR 1 262 0 185 261 87 43 chr11 105331974 105332043 -45451510 - L2 LINE L2 -50 3263 3192 * 342 253 22 22 chr11 105332447 105332538 -45451015 - MLT1K LTR MaLR -347 241 151 219 254 0 36 chr11 105333813 105333868 -45449685 + polypurine Low_complexity Low_complexity 2 54 0 285 51 0 0 chr11 105333944 105333983 -45449570 + (GA)n Simple_repeat Simple_repeat 2 40 0 243 0 0 0 chr11 105333986 105334013 -45449540 + (TG)n Simple_repeat Simple_repeat 1 27 0 201 39 0 0 chr11 105334012 105334038 -45449515 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 2744 170 22 0 chr11 105334629 105335076 -45448477 + LTR32 LTR ERVL 15 471 0 245 250 62 0 chr11 105335659 105335723 -45447830 + L2 LINE L2 3153 3220 -52 690 105 0 0 chr11 105335753 105335858 -45447695 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 229 239 56 14 chr11 105337701 105337772 -45445781 - LTR33A LTR ERVL -328 195 122 528 308 109 5 chr11 105338424 105338645 -45444908 - MIR SINE MIR -13 249 6 1629 211 27 15 chr11 105338879 105339210 -45444343 - MER21B LTR ERV1 -528 335 1 352 220 20 60 chr11 105339237 105339337 -45444216 - L2 LINE L2 -105 3208 3113 901 269 74 32 chr11 105339349 105339728 -45443825 - LTR16C LTR ERVL 0 491 97 637 329 70 20 chr11 105339853 105340218 -45443335 - L2 LINE L2 -200 3113 2733 266 235 186 39 chr11 105340610 105340712 -45442841 - MIR SINE MIR -78 184 68 203 195 24 0 chr11 105340821 105340862 -45442691 + (CATA)n Simple_repeat Simple_repeat 3 44 0 221 214 31 92 chr11 105340951 105341049 -45442504 - L2 LINE L2 -1288 2026 1935 2340 87 10 3 chr11 105341417 105341717 -45441836 - AluSg SINE Alu -8 302 1 2471 152 29 11 chr11 105342182 105342635 -45440918 - MER65C LTR ERV1 0 461 1 644 233 13 20 chr11 105343785 105343935 -45439618 + MER5A DNA MER1_type 35 183 -6 984 153 0 0 chr11 105344602 105344752 -45438801 - FRAM SINE Alu -3 173 24 256 189 19 0 chr11 105344823 105344876 -45438677 - MLT1J2 LTR MaLR -312 138 85 221 320 13 0 chr11 105345076 105345154 -45438399 + CT-rich Low_complexity Low_complexity 3 81 0 547 307 18 24 chr11 105345399 105345565 -45437988 - MER5A DNA MER1_type -8 181 17 403 304 37 107 chr11 105345714 105346040 -45437513 + L2 LINE L2 2968 3270 -2 2487 88 0 0 chr11 105346160 105346467 -45437086 + AluSc SINE Alu 1 307 -2 25 0 0 0 chr11 105346481 105346506 -45437047 + GC_rich Low_complexity Low_complexity 1 25 0 546 198 18 0 chr11 105346638 105346749 -45436804 - L1MD1 LINE L1 -15 6227 6115 3221 233 45 25 chr11 105346752 105347814 -45435739 - L1M4 LINE L1 -1127 5019 3936 633 258 0 8 chr11 105348231 105348359 -45435194 - MIR SINE MIR -112 150 24 2542 253 47 58 chr11 105348359 105349240 -45434313 - L1ME2 LINE L1 -3 6161 5272 17785 42 5 0 chr11 105349240 105352226 -45431327 - L1PA5 LINE L1 -2 6152 3157 2542 253 47 58 chr11 105352226 105352920 -45430633 - L1ME2 LINE L1 -892 5272 4607 653 110 100 0 chr11 105352920 105353020 -45430533 - HY1 scRNA scRNA -2 110 1 2542 253 47 58 chr11 105353020 105353338 -45430215 - L1ME2 LINE L1 -1557 4607 4287 16499 126 30 16 chr11 105353742 105356435 -45427118 - Tigger4(Zombi) DNA MER2_type 0 2731 1 309 286 48 61 chr11 105357272 105357419 -45426134 - MIR3 SINE MIR -27 181 37 208 237 51 0 chr11 105357745 105357804 -45425749 - MIR SINE MIR -13 249 188 651 310 81 12 chr11 105358652 105358910 -45424643 + L3 LINE CR1 1252 1527 -50 2169 129 7 0 chr11 105359001 105359310 -45424243 + AluSx SINE Alu 1 311 -1 248 313 60 22 chr11 105359360 105359494 -45424059 + MIR SINE MIR 52 190 -72 547 158 0 0 chr11 105360186 105360268 -45423285 + AluSg/x SINE Alu 210 291 -21 275 259 45 18 chr11 105360543 105360655 -45422898 + MLT1L LTR MaLR 496 610 -5 1078 197 55 17 chr11 105360710 105361000 -45422553 - L1MA9 LINE L1 -25 6287 5987 26 30 0 0 chr11 105361028 105361061 -45422492 + AT_rich Low_complexity Low_complexity 1 33 0 225 0 0 0 chr11 105361397 105361422 -45422131 + (TCTCCC)n Simple_repeat Simple_repeat 2 26 0 4737 105 28 30 chr11 105361422 105362268 -45421285 + SVA Other Other 1 845 -541 482 306 157 0 chr11 105363885 105364032 -45419521 - MER5A DNA MER1_type -1 188 19 341 298 94 28 chr11 105364103 105364284 -45419269 + MIR SINE MIR 13 205 -57 375 341 30 0 chr11 105365363 105365495 -45418058 - MIR SINE MIR -122 140 5 25 0 0 0 chr11 105365691 105365716 -45417837 + AT_rich Low_complexity Low_complexity 1 25 0 3838 17 0 0 chr11 105365716 105366126 -45417427 - SVA Other Other -1 1385 976 260 220 0 0 chr11 105366756 105366806 -45416747 - L2 LINE L2 0 3313 3264 2052 158 42 66 chr11 105366806 105367307 -45416246 + LTR22B LTR ERVK 1 489 -3 1497 179 18 82 chr11 105367358 105367748 -45415805 + MLT1A1 LTR MaLR 1 365 0 688 214 125 0 chr11 105367945 105368113 -45415440 - MIR SINE MIR -26 236 48 336 291 156 0 chr11 105368122 105368301 -45415252 - L2 LINE L2 -261 3011 2805 687 267 81 15 chr11 105368325 105368598 -45414955 - L1ME1 LINE L1 -15 6151 5861 193 29 29 29 chr11 105368599 105368634 -45414919 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5495 161 28 27 chr11 105368635 105368750 -45414803 - L1PA16 LINE L1 -23 6143 6030 2154 109 0 32 chr11 105368750 105369061 -45414492 - AluSg SINE Alu -9 301 1 5495 161 28 27 chr11 105369061 105371003 -45412550 - L1PA16 LINE L1 -136 6030 4086 1453 216 115 16 chr11 105371002 105371328 -45412225 - L1ME1 LINE L1 -300 5866 5574 * 279 0 0 0 chr11 105371328 105371359 -45412194 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1798 154 26 0 chr11 105371363 105371636 -45411917 - AluJb SINE Alu -32 280 1 1453 216 115 16 chr11 105371636 105371649 -45411904 - L1ME1 LINE L1 -594 5572 5562 207 0 0 0 chr11 105371649 105371672 -45411881 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1453 216 115 16 chr11 105371672 105371779 -45411774 - L1ME1 LINE L1 -604 5562 5369 1246 219 87 45 chr11 105371769 105372537 -45411016 - L1MCc LINE L1 -3512 3052 2284 * 1230 156 0 5 chr11 105372575 105372786 -45410767 + MER2 DNA MER2_type 1 210 -135 376 236 14 0 chr11 105372814 105372886 -45410667 + MER2 DNA MER2_type 273 345 0 2000 246 105 62 chr11 105372897 105374520 -45409033 - L1MCc LINE L1 -4500 2245 432 396 276 90 119 chr11 105374957 105375225 -45408328 - L1MCc LINE L1 -5781 264 5 372 261 26 26 chr11 105375242 105375357 -45408196 - L2 LINE L2 -502 2812 2698 251 323 103 32 chr11 105375925 105376080 -45407473 - MER5A DNA MER1_type -2 187 22 656 317 0 5 chr11 105376109 105376317 -45407236 - LTR16C LTR ERVL 0 491 285 189 288 14 68 chr11 105377518 105377591 -45405962 - L2 LINE L2 -4 3309 3241 180 111 0 0 chr11 105377699 105377726 -45405827 + (TATG)n Simple_repeat Simple_repeat 2 28 0 309 202 11 75 chr11 105377738 105377832 -45405721 - MIR SINE MIR -56 206 119 412 288 92 9 chr11 105378288 105378503 -45405050 - MIR SINE MIR -7 255 12 412 306 66 0 chr11 105378673 105378794 -45404759 + L2 LINE L2 3144 3272 0 187 289 77 0 chr11 105379342 105379394 -45404159 - L2 LINE L2 -48 3265 3210 713 274 87 25 chr11 105379394 105379715 -45403838 - MER57A LTR ERV1 0 403 63 331 315 40 10 chr11 105379921 105380050 -45403503 - MIR SINE MIR -65 143 20 1505 104 0 0 chr11 105380240 105380469 -45403084 - AluSg/x SINE Alu 0 315 87 239 313 46 53 chr11 105381276 105381407 -45402146 - MIR3 SINE MIR -30 178 49 1647 237 98 37 chr11 105381742 105382082 -45401471 + L2 LINE L2 2425 2813 -500 393 22 0 0 chr11 105382082 105382128 -45401425 + (CA)n Simple_repeat Simple_repeat 2 47 0 1647 237 98 37 chr11 105382128 105382354 -45401199 + L2 LINE L2 2813 3024 -289 2308 116 0 0 chr11 105382459 105382761 -45400792 + AluSx SINE Alu 1 302 -10 529 279 0 0 chr11 105382900 105383011 -45400542 - L2 LINE L2 -292 3021 2911 184 375 48 40 chr11 105383155 105383406 -45400147 - L2 LINE L2 -1353 1961 1709 980 189 0 0 chr11 105384385 105384554 -45398999 + AluJo SINE Alu 125 293 -19 1975 161 9 3 chr11 105384985 105385315 -45398238 + Tigger7 DNA MER2_type 17 348 -202 860 120 13 20 chr11 105385306 105385456 -45398097 + Tigger7 DNA MER2_type 2339 2487 0 * 1668 222 103 29 chr11 105386413 105386936 -45396617 - MLT1E LTR MaLR -28 565 4 1650 159 4 4 chr11 105388216 105388474 -45395079 - AluSx SINE Alu -26 286 29 22 0 0 0 chr11 105388811 105388833 -45394720 + AT_rich Low_complexity Low_complexity 1 22 0 332 311 78 36 chr11 105388949 105389116 -45394437 - HAL1 LINE L1 -109 2398 2225 661 324 60 39 chr11 105389120 105389805 -45393748 - HAL1 LINE L1 -1052 1455 757 221 274 70 76 chr11 105390502 105390659 -45392894 + MIR SINE MIR 89 244 -18 428 317 77 31 chr11 105391391 105391627 -45391926 + MIR SINE MIR 4 256 -6 671 273 42 66 chr11 105393016 105393274 -45390279 + MIR SINE MIR 7 253 -9 255 125 0 0 chr11 105393275 105393315 -45390238 + (CAT)n Simple_repeat Simple_repeat 1 40 0 196 256 0 0 chr11 105395442 105395485 -45388068 - L2 LINE L2 -16 3297 3255 246 229 0 0 chr11 105395918 105395966 -45387587 + (TG)n Simple_repeat Simple_repeat 2 49 0 3266 154 9 16 chr11 105396687 105397259 -45386294 - MER6A DNA MER2_type 0 605 38 339 273 50 50 chr11 105398200 105398321 -45385232 - L2 LINE L2 -1 3271 3151 195 338 46 64 chr11 105398330 105398611 -45384942 - L2 LINE L2 -354 2960 2685 686 303 122 28 chr11 105398744 105399071 -45384482 + L2 LINE L2 2906 3263 -9 294 292 19 65 chr11 105399495 105399649 -45383904 + L3b LINE CR1 1215 1361 -222 360 230 14 70 chr11 105400487 105400629 -45382924 + MER3 DNA MER1_type 41 127 -82 256 303 0 0 chr11 105401061 105401137 -45382416 + MIR3 SINE MIR 125 200 -8 333 311 33 66 chr11 105401584 105401825 -45381728 - L2 LINE L2 -839 2475 2243 595 246 192 10 chr11 105401860 105402063 -45381490 + MIR SINE MIR 2 241 -21 382 327 4 4 chr11 105402068 105402224 -45381329 - MIR SINE MIR -60 148 2 349 269 149 7 chr11 105402227 105402368 -45381185 + MIR SINE MIR 102 262 0 614 112 0 0 chr11 105402704 105402793 -45380760 - 5S rRNA rRNA -32 89 1 317 344 38 31 chr11 105404256 105404416 -45379137 - MIR SINE MIR -55 207 47 321 274 118 0 chr11 105404420 105404522 -45379031 - MIR SINE MIR -82 180 67 361 195 98 9 chr11 105405420 105405586 -45377967 - MER96B DNA MER1_type? -182 235 8 2068 93 0 52 chr11 105405739 105406030 -45377523 - AluY SINE Alu -35 276 1 23 0 0 0 chr11 105406581 105406604 -45376949 + AT_rich Low_complexity Low_complexity 1 23 0 5787 141 20 1 chr11 105406604 105408192 -45375361 - L1PB1 LINE L1 0 6151 4536 188 273 61 0 chr11 105408254 105408320 -45375233 + MIR SINE MIR 119 188 -74 36 0 0 0 chr11 105408445 105408481 -45375072 + AT_rich Low_complexity Low_complexity 1 36 0 256 351 21 11 chr11 105408975 105409069 -45374484 - MIR SINE MIR -78 130 36 459 0 0 0 chr11 105409419 105409470 -45374083 + (CA)n Simple_repeat Simple_repeat 2 52 0 2391 178 19 7 chr11 105409706 105410133 -45373420 + MSTB1 LTR MaLR 1 432 0 260 291 149 28 chr11 105410385 105410526 -45373027 + MIR SINE MIR 48 205 -57 2229 121 0 0 chr11 105410635 105410960 -45372593 + AluSx SINE Alu 3 312 0 185 262 49 33 chr11 105411078 105411139 -45372414 + MIR SINE MIR 41 102 -160 238 143 24 0 chr11 105411189 105411231 -45372322 - MIR SINE MIR -30 232 190 * 304 218 0 121 chr11 105411227 105411351 -45372202 + MIR SINE MIR 110 218 -44 5623 221 79 26 chr11 105411408 105413446 -45370107 + L1MDa LINE L1 38 2351 -4189 1843 161 0 0 chr11 105414084 105414406 -45369147 + L1MB2 LINE L1 5822 6143 -28 1040 203 142 30 chr11 105414445 105414775 -45368778 + MLT1E2 LTR MaLR 218 584 -42 1224 326 60 50 chr11 105414910 105415820 -45367733 + L2 LINE L2 1898 2817 -497 312 73 18 0 chr11 105416009 105416064 -45367489 + L1PA16 LINE L1 5277 5332 -834 582 136 11 0 chr11 105416064 105416152 -45367401 + AluS SINE Alu 1 89 -224 4947 93 41 26 chr11 105416152 105416956 -45366597 + L1PA16 LINE L1 5341 6156 -10 21 0 0 0 chr11 105416956 105416977 -45366576 + AT_rich Low_complexity Low_complexity 1 21 0 875 298 4 8 chr11 105417628 105417870 -45365683 + MIR SINE MIR 21 261 -1 23 0 0 0 chr11 105418358 105418381 -45365172 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr11 105418666 105418689 -45364864 + (TTATA)n Simple_repeat Simple_repeat 3 25 0 1835 162 91 40 chr11 105419393 105419789 -45363764 - MER21A LTR ERV1 -19 912 497 1629 167 45 42 chr11 105419778 105420114 -45363439 - MER21A LTR ERV1 -571 360 24 * 513 0 0 0 chr11 105420114 105420171 -45363382 + (TG)n Simple_repeat Simple_repeat 2 58 0 328 331 54 36 chr11 105420652 105420818 -45362735 - L2 LINE L2 -215 3057 2889 300 330 17 35 chr11 105420920 105421035 -45362518 + MER91A DNA MER1_type 59 171 -25 245 333 53 0 chr11 105421061 105421136 -45362417 + MER91A DNA MER1_type 117 195 -1 677 323 142 28 chr11 105421144 105421608 -45361945 - L2 LINE L2 -495 2819 2303 213 262 0 16 chr11 105423303 105423364 -45360189 + CT-rich Low_complexity Low_complexity 6 65 0 1562 222 59 74 chr11 105423878 105424404 -45359149 + LTR40a LTR ERVL 2 519 0 1054 126 40 0 chr11 105424876 105425027 -45358526 - AluY SINE Alu -13 298 142 502 157 36 0 chr11 105425027 105425110 -45358443 + AluSx SINE Alu 50 135 -178 2182 86 0 10 chr11 105425172 105425463 -45358090 + AluY SINE Alu 1 288 -23 194 0 39 0 chr11 105425466 105425492 -45358061 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1128 132 6 6 chr11 105425492 105425659 -45357894 + AluSx SINE Alu 133 299 -13 293 258 175 10 chr11 105429817 105429914 -45353639 - MIR SINE MIR -148 114 2 702 301 5 10 chr11 105430231 105430440 -45353113 + MER63A DNA MER1_type 1 208 -2 665 276 44 15 chr11 105430526 105430729 -45352824 + MIR SINE MIR 8 216 -46 415 294 169 24 chr11 105431536 105431832 -45351721 - L2 LINE L2 -70 3243 2905 395 286 12 47 chr11 105432709 105432880 -45350673 + L2 LINE L2 3108 3272 -41 433 346 78 5 chr11 105433084 105433289 -45350264 + MIR SINE MIR 18 237 -25 406 286 79 32 chr11 105436038 105436227 -45347326 + MIR SINE MIR 8 205 -57 2164 85 3 0 chr11 105437654 105437948 -45345605 - L1PA8 LINE L1 -9 6163 5869 200 239 22 0 chr11 105438016 105438062 -45345491 + L3b LINE CR1 1434 1480 -103 290 263 38 12 chr11 105438109 105438189 -45345364 - MIR SINE MIR -65 143 62 348 308 28 63 chr11 105438437 105438580 -45344973 - MIR SINE MIR -108 154 17 344 318 8 23 chr11 105439535 105439664 -45343889 + L2 LINE L2 3134 3260 -12 349 322 17 26 chr11 105439766 105439881 -45343672 - L2 LINE L2 -1 3312 3199 25 0 0 0 chr11 105440003 105440028 -45343525 + AT_rich Low_complexity Low_complexity 1 25 0 2158 107 3 35 chr11 105440029 105440346 -45343207 + AluSx SINE Alu 1 307 -5 1133 137 6 0 chr11 105441905 105442073 -45341480 - AluSg/x SINE Alu -9 301 133 2390 28 0 18 chr11 105442927 105443211 -45340342 + AluY SINE Alu 1 279 -32 290 232 58 29 chr11 105443360 105443498 -45340055 + (CCCCAA)n Simple_repeat Simple_repeat 1 142 0 999 318 138 14 chr11 105443676 105444333 -45339220 + L2 LINE L2 2552 3313 0 286 308 118 13 chr11 105444878 105445066 -45338487 + MIR3 SINE MIR 6 206 -45 231 108 54 0 chr11 105445931 105445968 -45337585 + MER20B DNA MER1_type 30 68 -715 * 726 228 61 9 chr11 105445966 105446194 -45337359 + MER20B DNA MER1_type 543 782 -1 969 304 137 2 chr11 105446613 105447014 -45336539 - MLT1J LTR MaLR 0 511 57 339 65 0 0 chr11 105448177 105448223 -45335330 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1045 154 0 25 chr11 105450769 105450931 -45332622 + FRAM SINE Alu 1 157 -19 239 303 143 8 chr11 105451661 105451780 -45331773 + MIR SINE MIR 12 146 -116 2287 171 60 38 chr11 105451999 105452495 -45331058 + MLT1D LTR MaLR 1 503 -2 256 269 134 47 chr11 105452822 105453075 -45330478 - L2 LINE L2 -467 2847 2573 227 194 65 16 chr11 105453023 105453085 -45330468 + MIR SINE MIR 125 189 -73 * 323 285 32 86 chr11 105453212 105453398 -45330155 - MIR3 SINE MIR 0 208 33 374 208 115 10 chr11 105453557 105453653 -45329900 - MER103 DNA DNA -58 108 3 2008 148 11 36 chr11 105454414 105454772 -45328781 - MLT2D LTR ERVL -64 350 2 213 209 70 105 chr11 105454925 105455011 -45328542 - MIR3 SINE MIR -11 197 115 213 178 0 0 chr11 105455672 105455717 -45327836 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 5765 144 28 7 chr11 105455724 105457066 -45326487 - L1MA8 LINE L1 -65 6226 4855 339 303 148 72 chr11 105457072 105457336 -45326217 + L2 LINE L2 2897 3180 -92 380 310 35 20 chr11 105457342 105457539 -45326014 - LTR33 LTR ERVL -18 503 304 374 202 67 10 chr11 105458402 105458506 -45325047 + MLT1J LTR MaLR 398 507 -4 402 317 50 8 chr11 105459808 105459928 -45323625 - L2 LINE L2 0 3272 3148 289 317 110 7 chr11 105460379 105460524 -45323029 - L2 LINE L2 -10 3262 3103 562 358 29 17 chr11 105461341 105461581 -45321972 - MIR SINE MIR 0 262 20 284 327 35 26 chr11 105462169 105462282 -45321271 + MIR3 SINE MIR 4 117 -91 3923 131 22 3 chr11 105462334 105462961 -45320592 + L1PA15 LINE L1 5525 6163 -2 309 240 132 8 chr11 105462975 105463104 -45320449 - L1 LINE L1 -1597 4549 4405 * 3766 183 62 39 chr11 105463081 105463703 -45319850 + L1MB5 LINE L1 4838 5445 -729 2308 103 7 0 chr11 105463703 105464004 -45319549 + AluSg SINE Alu 1 303 -7 3766 183 62 39 chr11 105464004 105464679 -45318874 + L1MB5 LINE L1 5445 6165 -9 261 282 17 43 chr11 105465995 105466112 -45317441 + MIR SINE MIR 76 189 -73 421 300 150 62 chr11 105466674 105466947 -45316606 - L2 LINE L2 -2 3270 2974 2385 274 76 13 chr11 105467366 105468654 -45314899 - L1MB1 LINE L1 -4182 3385 2098 12280 206 40 13 chr11 105468655 105472339 -45311214 + L1MB1 LINE L1 3390 7199 -388 276 30 0 0 chr11 105472339 105472372 -45311181 + (TG)n Simple_repeat Simple_repeat 2 34 0 12280 206 40 13 chr11 105472372 105472640 -45310913 + L1MB1 LINE L1 7199 7458 -129 1949 108 8 0 chr11 105472813 105473081 -45310472 - AluSp SINE Alu -43 270 1 5830 211 67 52 chr11 105473522 105474217 -45309336 - L1ME2 LINE L1 -7 6226 5543 2551 49 0 3 chr11 105474217 105474522 -45309031 - AluY SINE Alu -7 304 1 5830 211 67 52 chr11 105474522 105476308 -45307245 - L1ME2 LINE L1 -690 5543 3694 1044 198 57 118 chr11 105476308 105476697 -45306856 + MLT1A1 LTR MaLR 1 365 0 5830 211 67 52 chr11 105476697 105477241 -45306312 - L1ME2 LINE L1 -2539 3694 3159 500 235 12 24 chr11 105477382 105477548 -45306005 - L1ME2 LINE L1 -4029 2367 2204 * 2451 288 56 48 chr11 105477539 105479139 -45304414 - L1ME2 LINE L1 -4727 1669 56 198 0 0 0 chr11 105479882 105479904 -45303649 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 276 369 76 19 chr11 105479947 105480104 -45303449 - L2 LINE L2 0 3272 3107 298 341 152 18 chr11 105480744 105480908 -45302645 + MIR SINE MIR 26 211 -51 324 0 0 0 chr11 105481027 105481063 -45302490 + (TG)n Simple_repeat Simple_repeat 2 37 0 612 236 28 28 chr11 105481087 105481303 -45302250 - L1MC5 LINE L1 -48 7913 7698 277 168 336 8 chr11 105481486 105481605 -45301948 - L1MC5 LINE L1 -261 7700 7543 1506 270 123 22 chr11 105481883 105482414 -45301139 + MLT1G LTR MaLR 1 548 -1 1847 160 0 0 chr11 105482416 105482691 -45300862 + AluSx SINE Alu 1 275 -37 396 0 0 0 chr11 105482697 105482741 -45300812 + (CATA)n Simple_repeat Simple_repeat 2 45 0 411 342 160 55 chr11 105482756 105483282 -45300271 - HAL1 LINE L1 -1831 676 96 234 289 24 24 chr11 105483300 105483383 -45300170 - HAL1 LINE L1 -1885 622 540 295 295 11 49 chr11 105483466 105483649 -45299904 - HAL1 LINE L1 -2155 352 177 533 318 78 12 chr11 105484508 105484753 -45298800 - MIR SINE MIR 0 262 2 22 0 0 0 chr11 105485910 105485932 -45297621 + AT_rich Low_complexity Low_complexity 1 22 0 2208 105 3 3 chr11 105485932 105486226 -45297327 - AluSx SINE Alu -17 295 2 212 296 0 12 chr11 105487074 105487155 -45296398 + A-rich Low_complexity Low_complexity 4 83 0 207 191 0 0 chr11 105488905 105488968 -45294585 + G-rich Low_complexity Low_complexity 1 63 0 429 261 49 0 chr11 105489000 105489113 -45294440 - MSTC LTR MaLR -241 124 1 870 199 24 63 chr11 105489113 105489268 -45294285 + L1MC3 LINE L1 7590 7749 -246 189 0 0 0 chr11 105489268 105489289 -45294264 + (CAAAAA)n Simple_repeat Simple_repeat 5 25 0 2043 87 13 24 chr11 105489290 105489588 -45293965 + AluY SINE Alu 1 295 -16 870 199 24 63 chr11 105489588 105489806 -45293747 + L1MC3 LINE L1 7748 7995 0 335 306 69 28 chr11 105489813 105489957 -45293596 - L2 LINE L2 -1 3312 3163 283 295 39 0 chr11 105490218 105490296 -45293257 + MIR SINE MIR 110 190 -72 24 0 0 0 chr11 105490901 105490925 -45292628 + AT_rich Low_complexity Low_complexity 1 24 0 30 0 0 0 chr11 105491552 105491582 -45291971 + AT_rich Low_complexity Low_complexity 1 30 0 229 356 61 9 chr11 105491846 105491961 -45291592 - MIR SINE MIR -119 143 23 26 50 0 0 chr11 105492003 105492043 -45291510 + AT_rich Low_complexity Low_complexity 1 40 0 441 319 71 0 chr11 105493703 105493872 -45289681 + MIR SINE MIR 3 183 -79 247 303 92 18 chr11 105494102 105494211 -45289342 - MIR SINE MIR -123 139 23 285 280 0 0 chr11 105494227 105494302 -45289251 + (TA)n Simple_repeat Simple_repeat 2 76 0 1756 154 18 44 chr11 105494603 105494986 -45288567 + THE1C LTR MaLR 3 375 0 1264 257 180 19 chr11 105496602 105497225 -45286328 + L2 LINE L2 2140 2918 -396 189 0 0 0 chr11 105497227 105497248 -45286305 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1724 215 110 21 chr11 105497250 105497776 -45285777 - L1ME2 LINE L1 -8 6156 5584 851 285 84 38 chr11 105497776 105498144 -45285409 + L2 LINE L2 2924 3308 -5 491 136 0 11 chr11 105498144 105498232 -45285321 + (GGAA)n Simple_repeat Simple_repeat 4 90 0 503 167 0 46 chr11 105498914 105499022 -45284531 + L1MC1 LINE L1 6231 6333 0 888 294 84 25 chr11 105499229 105499716 -45283837 - LTR33A LTR ERVL 0 523 8 251 65 0 0 chr11 105499879 105499910 -45283643 + (GA)n Simple_repeat Simple_repeat 2 32 0 839 141 17 11 chr11 105499910 105500087 -45283466 + GA-rich Low_complexity Low_complexity 3 180 0 265 335 33 25 chr11 105500607 105500787 -45282766 + MIR SINE MIR 16 195 -67 654 239 24 78 chr11 105501502 105501707 -45281846 - L2 LINE L2 -6 3307 3114 380 348 22 0 chr11 105503255 105503393 -45280160 - MIR SINE MIR -119 143 3 553 359 68 0 chr11 105503925 105504162 -45279391 + MIR SINE MIR 3 255 -7 239 321 0 49 chr11 105505052 105505133 -45278420 + L2 LINE L2 3232 3308 -5 460 252 7 82 chr11 105505304 105505451 -45278102 + MIR SINE MIR 18 153 -109 449 219 0 0 chr11 105505484 105505566 -45277987 + Tigger3(Golem) DNA MER2_type 1 82 -2947 * 1677 162 3 25 chr11 105505564 105505878 -45277675 + Tigger3(Golem) DNA MER2_type 2721 3027 -2 448 16 0 32 chr11 105505939 105506002 -45277551 + (TA)n Simple_repeat Simple_repeat 1 61 0 627 170 0 0 chr11 105506356 105506509 -45277044 + G-rich Low_complexity Low_complexity 1 153 0 320 319 174 8 chr11 105507793 105508028 -45275525 + L1M2 LINE L1 675 948 -5901 742 137 129 0 chr11 105510688 105510827 -45272726 + FRAM SINE Alu 2 158 -8 21 0 0 0 chr11 105511825 105511846 -45271707 + AT_rich Low_complexity Low_complexity 1 21 0 651 191 79 20 chr11 105511974 105512126 -45271427 - MIR SINE MIR -35 227 67 289 284 30 0 chr11 105512240 105512307 -45271246 + Charlie1 DNA MER1_type 3 71 -2690 701 203 31 0 chr11 105512320 105512483 -45271070 + Charlie1 DNA MER1_type 2361 2528 -233 231 75 25 0 chr11 105512476 105512516 -45271037 + Charlie1 DNA MER1_type 2711 2751 -10 * 294 274 99 43 chr11 105512668 105512965 -45270588 - L1ME LINE L1 -523 5647 5318 286 308 84 5 chr11 105513079 105513362 -45270191 - L1ME LINE L1 -1050 5096 4784 432 254 196 14 chr11 105513422 105513631 -45269922 - L1ME LINE L1 -1464 4682 4436 542 262 106 11 chr11 105513807 105514089 -45269464 - L1ME LINE L1 -1955 4191 3883 1069 221 118 121 chr11 105514977 105515524 -45268029 - MER21B LTR ERV1 -105 758 212 1958 131 3 7 chr11 105515524 105515806 -45267747 - AluSx SINE Alu -31 281 1 1069 221 118 121 chr11 105515806 105516018 -45267535 - MER21B LTR ERV1 -651 212 1 22 56 0 0 chr11 105516544 105516580 -45266973 + AT_rich Low_complexity Low_complexity 1 36 0 224 386 112 26 chr11 105517865 105518357 -45265196 + L2 LINE L2 2381 2914 -400 1416 248 68 30 chr11 105518359 105518722 -45264831 - MLT1E2 LTR MaLR 0 626 239 2152 88 33 26 chr11 105518722 105519028 -45264525 - AluSc SINE Alu -1 308 1 1416 248 68 30 chr11 105519028 105519135 -45264418 - MLT1E2 LTR MaLR -387 239 138 180 77 0 0 chr11 105519781 105519807 -45263746 + (A)n Simple_repeat Simple_repeat 1 26 0 2259 101 3 3 chr11 105520593 105520889 -45262664 - AluSc SINE Alu -12 297 2 1004 197 67 60 chr11 105520898 105521198 -45262355 - Charlie1a DNA MER1_type -1153 302 1 32596 78 13 3 chr11 105524600 105529241 -45254312 + L1PA5 LINE L1 11 4697 -1449 4603 83 14 16 chr11 105529246 105529935 -45253618 + L1PA5 LINE L1 5467 6154 0 1138 104 5 16 chr11 105530774 105530966 -45252587 + L1PA5 LINE L1 5965 6154 0 27 92 0 0 chr11 105531575 105531651 -45251902 + AT_rich Low_complexity Low_complexity 1 76 0 2055 86 19 68 chr11 105531788 105532112 -45251441 - AluSx SINE Alu -4 308 1 1655 130 52 37 chr11 105533451 105533721 -45249832 - AluSx SINE Alu -38 274 1 2404 86 3 0 chr11 105533730 105534032 -45249521 - AluSp SINE Alu -10 303 1 1808 180 14 17 chr11 105534193 105534538 -45249015 + MER2 DNA MER2_type 1 344 0 721 181 8 0 chr11 105535040 105535173 -45248380 + AluJo SINE Alu 1 134 -178 1979 151 26 32 chr11 105535406 105535783 -45247770 - THE1C LTR MaLR 0 375 1 1799 112 8 0 chr11 105536155 105536397 -45247156 + AluSx SINE Alu 53 296 -16 2280 82 3 0 chr11 105536458 105536751 -45246802 + AluY SINE Alu 1 294 -17 2308 81 7 0 chr11 105537502 105537798 -45245755 + AluSp SINE Alu 1 298 -15 22 35 0 0 chr11 105539494 105539523 -45244030 + AT_rich Low_complexity Low_complexity 1 29 0 1372 117 79 5 chr11 105539753 105539967 -45243586 + AluSq SINE Alu 66 295 -18 214 211 0 70 chr11 105540365 105540422 -45243131 + MER5B DNA MER1_type 1 53 -125 216 0 0 0 chr11 105540569 105540593 -45242960 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 207 284 129 9 chr11 105541437 105541553 -45242000 + MIR SINE MIR 88 217 -45 21 0 0 0 chr11 105542593 105542614 -45240939 + AT_rich Low_complexity Low_complexity 1 21 0 4718 122 35 15 chr11 105542685 105543462 -45240091 + Tigger2 DNA MER2_type 1 792 -1926 4442 170 22 29 chr11 105543585 105544106 -45239447 + L1MB1 LINE L1 5259 5773 -395 276 30 0 0 chr11 105544106 105544139 -45239414 + (TG)n Simple_repeat Simple_repeat 2 34 0 4442 170 22 29 chr11 105544139 105544528 -45239025 + L1MB1 LINE L1 5773 6163 -5 354 261 85 20 chr11 105544549 105544846 -45238707 - LTR37B LTR ERV1 -59 409 1 22 0 0 0 chr11 105546032 105546054 -45237499 + AT_rich Low_complexity Low_complexity 1 22 0 473 285 21 107 chr11 105548293 105548556 -45234997 + MIR SINE MIR 14 247 -15 215 338 180 14 chr11 105549012 105549151 -45234402 - L2 LINE L2 -273 3040 2879 548 249 28 66 chr11 105549166 105549347 -45234206 - L2 LINE L2 -560 2754 2581 1260 177 9 30 chr11 105549357 105549589 -45233964 + MER45B DNA AcHobo 82 308 -732 448 283 62 20 chr11 105549591 105549835 -45233718 - L1MEc LINE L1 -4924 1472 1219 * 1874 282 44 17 chr11 105549828 105550402 -45233151 - L1MEc LINE L1 -5675 721 133 2397 93 3 0 chr11 105550409 105550719 -45232834 - AluSp SINE Alu -2 311 1 248 128 0 21 chr11 105550747 105550778 -45232775 + (TA)n Simple_repeat Simple_repeat 2 33 -14 1957 109 51 0 chr11 105550778 105551052 -45232501 + AluSc SINE Alu 1 288 -21 248 128 0 21 chr11 105551052 105551067 -45232486 + (TA)n Simple_repeat Simple_repeat 33 47 0 352 237 10 31 chr11 105551067 105551164 -45232389 - L1MC4 LINE L1 -1339 6703 6609 25 51 0 0 chr11 105551379 105551418 -45232135 + AT_rich Low_complexity Low_complexity 1 39 0 632 353 63 37 chr11 105551876 105552154 -45231399 + L2 LINE L2 2896 3186 -86 228 67 0 0 chr11 105552154 105552184 -45231369 + (TG)n Simple_repeat Simple_repeat 1 30 0 632 353 63 37 chr11 105552184 105552253 -45231300 + L2 LINE L2 3186 3252 -20 403 349 52 18 chr11 105552390 105552619 -45230934 + MIR SINE MIR 26 262 0 184 311 90 0 chr11 105552802 105552903 -45230650 - MIR SINE MIR -5 203 88 241 331 79 8 chr11 105553646 105553775 -45229778 + MIR SINE MIR 18 151 -62 367 236 242 39 chr11 105553987 105554165 -45229388 + MIR SINE MIR 47 260 -2 758 206 79 115 chr11 105554178 105554658 -45228895 - LTR37B LTR ERV1 0 468 6 24 67 0 0 chr11 105555397 105555442 -45228111 + AT_rich Low_complexity Low_complexity 1 45 0 417 301 68 41 chr11 105555912 105556058 -45227495 + MIR SINE MIR 4 153 -109 23 0 0 0 chr11 105556544 105556567 -45226986 + AT_rich Low_complexity Low_complexity 1 23 0 509 282 98 70 chr11 105556752 105557110 -45226443 + HAL1 LINE L1 852 1219 -1288 21 0 0 0 chr11 105558396 105558417 -45225136 + AT_rich Low_complexity Low_complexity 1 21 0 1884 196 48 3 chr11 105559516 105559893 -45223660 - MSTD LTR MaLR 0 396 3 1731 226 64 83 chr11 105560863 105561379 -45222174 - MLT1D LTR MaLR -9 496 1 208 319 117 0 chr11 105561932 105562026 -45221527 - L2 LINE L2 0 3313 3209 673 230 93 0 chr11 105562331 105562492 -45221061 - MER20 DNA MER1_type -40 179 4 1739 256 117 33 chr11 105562497 105563275 -45220278 - L1ME3A LINE L1 -19 6151 5309 889 228 92 9 chr11 105564684 105564912 -45218641 - MIR SINE MIR 0 262 16 815 192 60 18 chr11 105565276 105565417 -45218136 - MER5A DNA MER1_type 0 189 38 2985 116 66 8 chr11 105565417 105565900 -45217653 + MER9 LTR ERVK 1 511 0 815 192 60 18 chr11 105565900 105565925 -45217628 - MER5A DNA MER1_type -151 38 16 421 280 60 24 chr11 105566024 105566192 -45217361 - MIR SINE MIR -3 259 86 1226 287 79 40 chr11 105566713 105567602 -45215951 - L1MEd LINE L1 -1047 1443 411 1738 126 34 0 chr11 105567902 105568165 -45215388 + AluJb SINE Alu 14 285 -27 186 167 0 0 chr11 105568165 105568201 -45215352 + (CA)n Simple_repeat Simple_repeat 1 36 0 263 127 0 18 chr11 105568576 105568590 -45214963 + (TA)n Simple_repeat Simple_repeat 2 15 -40 16521 132 29 7 chr11 105568590 105571257 -45212296 + Tigger4(Zombi) DNA MER2_type 5 2728 -3 263 127 0 18 chr11 105571257 105571297 -45212256 + (TA)n Simple_repeat Simple_repeat 15 55 0 306 184 10 19 chr11 105571499 105571602 -45211951 + (TA)n Simple_repeat Simple_repeat 2 103 0 509 158 11 38 chr11 105571634 105571817 -45211736 + (TA)n Simple_repeat Simple_repeat 2 179 0 42743 35 22 2 chr11 105572309 105578335 -45205218 + L1PA2 LINE L1 1 6151 -4 352 291 169 14 chr11 105578411 105578624 -45204929 + MIR SINE MIR 4 249 -13 375 105 20 216 chr11 105579816 105579888 -45203665 - L1MB1 LINE L1 -337 5852 5824 387 0 0 0 chr11 105579888 105579931 -45203622 + (TG)n Simple_repeat Simple_repeat 1 43 0 375 105 20 216 chr11 105579931 105580011 -45203542 - L1MB1 LINE L1 -365 5824 5730 * 2164 149 10 34 chr11 105579984 105580377 -45203176 - L1MB1 LINE L1 -1125 5021 4637 2104 118 0 20 chr11 105580377 105580674 -45202879 - AluSg SINE Alu -19 291 1 2164 149 10 34 chr11 105580674 105580697 -45202856 - L1MB1 LINE L1 -1509 4637 4615 5202 215 52 101 chr11 105580745 105582929 -45200624 - L1 LINE L1 -2028 4354 2065 983 25 0 0 chr11 105582929 105583047 -45200506 - L1PA4 LINE L1 -3 6152 6035 5202 215 52 101 chr11 105583047 105584006 -45199547 - L1 LINE L1 -4317 2065 1214 252 231 23 46 chr11 105584011 105584141 -45199412 + C-rich Low_complexity Low_complexity 5 131 0 1318 221 116 121 chr11 105584583 105584795 -45198758 + MER21B LTR ERV1 1 213 -650 1954 131 3 7 chr11 105584795 105585077 -45198476 + AluSx SINE Alu 1 281 -31 1318 221 116 121 chr11 105585077 105585626 -45197927 + MER21B LTR ERV1 213 758 -105 626 259 106 11 chr11 105586514 105586796 -45196757 + L1M4 LINE L1 3883 4191 -1955 273 248 193 13 chr11 105586943 105587181 -45196372 + L1M4 LINE L1 4402 4682 -1464 347 312 109 3 chr11 105587241 105587526 -45196027 + L1M4 LINE L1 4784 5098 -1048 326 274 99 43 chr11 105587638 105587935 -45195618 + L1P4 LINE L1 5318 5647 -523 244 75 25 0 chr11 105588087 105588127 -45195426 - Charlie1 DNA MER1_type -10 2751 2711 * 750 203 31 0 chr11 105588120 105588283 -45195270 - Charlie1 DNA MER1_type -233 2528 2361 313 284 30 0 chr11 105588296 105588363 -45195190 - Charlie1 DNA MER1_type -2690 71 3 652 191 79 20 chr11 105588477 105588629 -45194924 + MIR SINE MIR 67 227 -35 21 0 0 0 chr11 105588759 105588780 -45194773 + AT_rich Low_complexity Low_complexity 1 21 0 727 137 129 0 chr11 105589779 105589918 -45193635 - FRAM SINE Alu -8 158 2 224 386 112 26 chr11 105591347 105591839 -45191714 + L2 LINE L2 2381 2914 -400 1555 248 68 32 chr11 105591841 105592205 -45191348 - MLT1E2 LTR MaLR 0 626 240 2148 92 33 20 chr11 105592205 105592510 -45191043 - AluSc SINE Alu 0 309 1 1555 248 68 32 chr11 105592510 105592617 -45190936 - MLT1E2 LTR MaLR -386 240 138 180 77 0 0 chr11 105593264 105593290 -45190263 + (A)n Simple_repeat Simple_repeat 1 26 0 2146 80 4 7 chr11 105594076 105594351 -45189202 - AluSx SINE Alu -12 300 27 2115 123 115 34 chr11 105594393 105594834 -45188719 + Tigger2 DNA MER2_type 2125 2651 -67 1493 91 67 35 chr11 105594834 105595088 -45188465 + L1PA11 LINE L1 5913 6174 0 2115 123 115 34 chr11 105595088 105595162 -45188391 + Tigger2 DNA MER2_type 2651 2718 0 351 189 123 19 chr11 105595276 105595382 -45188171 - L1M4 LINE L1 -2282 3864 3748 390 291 134 0 chr11 105595433 105595567 -45187986 - MER5A DNA MER1_type -2 187 36 1257 170 197 20 chr11 105596761 105597055 -45186498 - MER7A DNA MER2_type 0 346 3 23 33 0 0 chr11 105597222 105597252 -45186301 + AT_rich Low_complexity Low_complexity 1 30 0 2087 87 72 0 chr11 105597261 105597538 -45186015 + AluY SINE Alu 1 297 -14 412 239 47 157 chr11 105598555 105598810 -45184743 - MIR SINE MIR -16 246 20 30 45 0 0 chr11 105599286 105599330 -45184223 + AT_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr11 105600045 105600082 -45183471 + AT_rich Low_complexity Low_complexity 1 37 0 205 245 194 10 chr11 105602001 105602099 -45181454 - L2 LINE L2 -551 2763 2648 193 214 170 80 chr11 105604385 105604497 -45179056 - MIR SINE MIR -71 137 16 2342 145 152 7 chr11 105604968 105605506 -45178047 + L1MB7 LINE L1 5569 6184 0 213 316 31 82 chr11 105605591 105605689 -45177864 - L2 LINE L2 -21 3251 3159 306 278 31 21 chr11 105605769 105605866 -45177687 - MIR SINE MIR -160 102 5 374 61 212 0 chr11 105607140 105607206 -45176347 - MADE1 DNA Mariner 0 80 1 618 103 23 0 chr11 105608517 105608604 -45174949 - 5S rRNA rRNA -31 90 2 384 247 34 0 chr11 105608637 105608726 -45174827 - MARNA DNA Mariner -31 555 464 306 252 63 31 chr11 105608647 105608774 -45174779 + MARNA DNA Mariner 43 173 -413 * 251 289 139 6 chr11 105608767 105608933 -45174620 - MARNA DNA Mariner -235 351 164 * 22 56 0 0 chr11 105609538 105609574 -45173979 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr11 105610246 105610270 -45173283 + AT_rich Low_complexity Low_complexity 1 24 0 1513 204 18 0 chr11 105610294 105610574 -45172979 + AluJo SINE Alu 1 285 -27 4626 192 108 43 chr11 105611086 105612449 -45171104 + Charlie1a DNA MER1_type 1 1451 -4 997 194 142 9 chr11 105612833 105613044 -45170509 - MER8 DNA MER2_type 0 239 1 189 0 0 0 chr11 105614365 105614386 -45169167 + (A)n Simple_repeat Simple_repeat 1 21 0 764 269 101 27 chr11 105614748 105615045 -45168508 - L2 LINE L2 0 3313 2995 229 321 36 0 chr11 105615901 105615985 -45167568 - L2 LINE L2 -217 3055 2969 184 310 32 77 chr11 105616508 105616663 -45166890 + MIR SINE MIR 82 229 -33 452 155 24 0 chr11 105617457 105617541 -45166012 + L1MB7 LINE L1 6046 6131 -53 465 276 97 27 chr11 105617909 105618094 -45165459 - MIR SINE MIR -64 198 1 182 324 84 0 chr11 105619453 105619524 -45164029 - L2 LINE L2 -3 3310 3234 1936 106 67 7 chr11 105619539 105619821 -45163732 - AluSc SINE Alu -10 299 1 2104 93 7 0 chr11 105619832 105620111 -45163442 - AluSq SINE Alu -3 310 30 387 246 144 24 chr11 105620593 105620760 -45162793 - MIR SINE MIR -11 251 65 1887 128 15 4 chr11 105621231 105621504 -45162049 + AluSx SINE Alu 1 276 -36 185 0 40 0 chr11 105621512 105621537 -45162016 + (TA)n Simple_repeat Simple_repeat 1 26 0 182 88 0 29 chr11 105621593 105621627 -45161926 + (TA)n Simple_repeat Simple_repeat 2 34 0 556 332 179 8 chr11 105621682 105622040 -45161513 + L2 LINE L2 2435 2853 -461 230 303 81 56 chr11 105622087 105622285 -45161268 + L2 LINE L2 3111 3313 0 1792 164 0 7 chr11 105622943 105623235 -45160318 - AluJb SINE Alu -13 299 10 2070 126 3 7 chr11 105623284 105623586 -45159967 - AluJb SINE Alu -9 303 3 1835 166 13 0 chr11 105623728 105624030 -45159523 - AluJb SINE Alu -6 306 1 584 198 0 0 chr11 105624379 105624495 -45159058 + L1MB7 LINE L1 6050 6165 -19 304 288 54 0 chr11 105624497 105624608 -45158945 + L1MC4a LINE L1 5814 5930 -1878 230 289 137 26 chr11 105626456 105626646 -45156907 + MIR SINE MIR 33 243 -19 485 252 56 28 chr11 105626773 105626916 -45156637 - MIR3 SINE MIR -2 206 60 391 217 0 0 chr11 105627907 105627976 -45155577 + AluJ/FLAM SINE Alu 1 69 -233 400 109 0 32 chr11 105628075 105628163 -45155390 + FLAM SINE Alu 76 126 -7 2084 128 3 3 chr11 105628699 105628995 -45154558 + AluSx SINE Alu 1 296 -16 2288 71 34 10 chr11 105629355 105629650 -45153903 + AluY SINE Alu 1 302 -9 279 312 0 55 chr11 105629733 105629842 -45153711 + MIR SINE MIR 106 208 -54 342 0 0 0 chr11 105629881 105629919 -45153634 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2043 132 0 0 chr11 105629921 105630202 -45153351 - AluSx SINE Alu -31 281 1 235 333 13 26 chr11 105631257 105631335 -45152218 - L3 LINE CR1 -454 1123 1047 739 328 59 40 chr11 105632413 105632834 -45150719 - L2 LINE L2 -814 2500 2072 218 262 48 60 chr11 105632919 105633003 -45150550 + MIR SINE MIR 68 150 -112 380 272 73 82 chr11 105634338 105634570 -45148983 - MIR SINE MIR -10 252 23 201 243 0 0 chr11 105635203 105635240 -45148313 + polypurine Low_complexity Low_complexity 3 39 0 862 264 19 0 chr11 105635297 105635509 -45148044 + MIR SINE MIR 47 262 0 1330 213 3 40 chr11 105636461 105636785 -45146768 + AluJb SINE Alu 1 312 0 664 303 104 0 chr11 105638054 105638285 -45145268 - MIR SINE MIR 0 262 8 1889 137 7 33 chr11 105638482 105638782 -45144771 - AluJb SINE Alu -19 293 2 2234 92 3 19 chr11 105639054 105639370 -45144183 - AluSx SINE Alu -1 311 1 371 256 110 12 chr11 105640109 105640273 -45143280 - HAL1 LINE L1 -895 1612 1433 1200 161 47 51 chr11 105640749 105640985 -45142568 + AluJo SINE Alu 61 295 -17 417 231 174 12 chr11 105641077 105641319 -45142234 + L1MC5 LINE L1 7546 7826 -135 398 286 67 71 chr11 105641363 105641632 -45141921 - MLT1H LTR MaLR -245 304 9 2307 101 3 0 chr11 105643447 105643755 -45139798 - AluSp SINE Alu -4 309 1 972 243 239 62 chr11 105644874 105644944 -45138609 - L2 LINE L2 -502 2812 2756 1785 191 28 8 chr11 105644944 105645299 -45138254 + MLT1A1 LTR MaLR 1 362 -3 1148 161 4 52 chr11 105645299 105645529 -45138024 - MER20 DNA MER1_type 0 219 1 972 243 239 62 chr11 105645529 105646115 -45137438 - L2 LINE L2 -557 2757 2039 245 317 178 0 chr11 105646288 105646389 -45137164 + L2 LINE L2 3138 3256 -16 23 78 0 0 chr11 105646797 105646848 -45136705 + AT_rich Low_complexity Low_complexity 1 51 0 391 213 47 10 chr11 105646875 105646996 -45136557 - MIR SINE MIR -36 172 45 2045 225 157 24 chr11 105647366 105648126 -45135427 - L1MC5 LINE L1 -47 7914 7054 842 200 46 0 chr11 105648140 105648315 -45135238 + MER5A DNA MER1_type 4 186 -3 2090 175 40 34 chr11 105648713 105649211 -45134342 + MLT1D LTR MaLR 5 505 0 34 0 0 0 chr11 105650742 105650776 -45132777 + AT_rich Low_complexity Low_complexity 1 34 0 229 146 73 0 chr11 105653962 105654003 -45129550 + L2 LINE L2 3213 3256 -16 325 314 91 16 chr11 105657341 105657462 -45126091 + L2 LINE L2 3139 3268 -4 460 310 125 0 chr11 105658220 105658404 -45125149 - MIR SINE MIR -19 243 37 508 173 181 8 chr11 105660996 105661123 -45122430 + MIR SINE MIR 84 232 -30 1292 211 0 16 chr11 105662521 105662763 -45120790 - MER8 DNA MER2_type 0 239 2 216 97 0 0 chr11 105663349 105663380 -45120173 + (ATGGTG)n Simple_repeat Simple_repeat 1 31 0 1829 204 81 104 chr11 105663952 105664270 -45119283 - MER82 DNA MER2_type -7 646 322 2901 117 2 0 chr11 105664270 105664696 -45118857 + L1PA13 LINE L1 5718 6144 -19 1829 204 81 104 chr11 105664696 105664829 -45118724 - MER82 DNA MER2_type -331 322 187 207 0 0 0 chr11 105664829 105664852 -45118701 + (CA)n Simple_repeat Simple_repeat 2 24 0 2415 68 14 0 chr11 105664853 105665146 -45118407 - AluY SINE Alu -14 297 1 1829 204 81 104 chr11 105665146 105665285 -45118268 - MER82 DNA MER2_type -465 188 67 1354 205 65 3 chr11 105665295 105665588 -45117965 + MER44D DNA MER2_type 29 609 0 2266 67 0 23 chr11 105667499 105667798 -45115755 - AluY SINE Alu -18 293 2 335 304 29 0 chr11 105669278 105669380 -45114173 + MIR SINE MIR 100 204 -58 3255 129 175 118 chr11 105670076 105670437 -45113116 + L1MC3 LINE L1 6692 7031 -754 300 333 0 0 chr11 105670437 105670533 -45113020 + MLT1A1 LTR MaLR 29 124 -443 3255 129 175 118 chr11 105670533 105671100 -45112453 + L1MC3 LINE L1 7031 7773 -12 946 231 115 152 chr11 105671100 105671859 -45111694 + Charlie7 DNA MER1_type 112 842 -1770 487 178 47 0 chr11 105671936 105672043 -45111510 + Charlie7 DNA MER1_type 1215 1326 -1286 573 163 5 23 chr11 105672051 105672164 -45111389 + MLT1A1 LTR MaLR 228 311 -54 820 266 14 0 chr11 105672177 105672395 -45111158 + Charlie7 DNA MER1_type 1308 1528 -1084 711 285 114 4 chr11 105672397 105672625 -45110928 + MIR SINE MIR 10 262 0 682 220 27 7 chr11 105672634 105672784 -45110769 + Charlie7 DNA MER1_type 1517 1669 -943 285 333 54 121 chr11 105673290 105673753 -45109800 - L2 LINE L2 0 3272 2841 2257 97 3 0 chr11 105673871 105674170 -45109383 - AluSq SINE Alu -13 300 1 596 191 9 26 chr11 105674274 105674389 -45109164 - FLAM_C SINE Alu -16 117 5 386 317 165 30 chr11 105675189 105675492 -45108061 + MLT1L LTR MaLR 195 538 -77 654 203 0 16 chr11 105675498 105675626 -45107927 + FLAM_A SINE Alu 4 129 -4 30 45 0 0 chr11 105675626 105675670 -45107883 + AT_rich Low_complexity Low_complexity 1 44 0 1947 138 0 0 chr11 105675906 105676182 -45107371 + AluSx SINE Alu 1 276 -36 222 37 0 0 chr11 105676188 105676215 -45107338 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 301 167 12 12 chr11 105676564 105676648 -45106905 + GA-rich Low_complexity Low_complexity 2 85 0 379 336 91 64 chr11 105677403 105678247 -45105306 + L2 LINE L2 151 1017 -2297 292 324 149 29 chr11 105678453 105678903 -45104650 + L2 LINE L2 2469 2972 -342 376 183 28 0 chr11 105679957 105680028 -45103525 - MER116 DNA Mariner 0 80 8 1349 174 0 31 chr11 105680271 105680529 -45103024 + L1M4 LINE L1 5434 5683 -501 496 120 26 111 chr11 105680541 105680658 -45102895 + L1M4 LINE L1 5643 5749 -415 361 329 18 12 chr11 105680658 105680828 -45102725 + L2 LINE L2 2724 2894 -420 952 203 0 0 chr11 105681039 105681216 -45102337 - FRAM SINE Alu 0 176 1 407 295 9 9 chr11 105681251 105681356 -45102197 + L2 LINE L2 3167 3271 -1 21 0 0 0 chr11 105681635 105681656 -45101897 + AT_rich Low_complexity Low_complexity 1 21 0 215 219 141 0 chr11 105681713 105681777 -45101776 + MIR SINE MIR 34 106 -102 27 29 0 0 chr11 105682019 105682053 -45101500 + AT_rich Low_complexity Low_complexity 1 34 0 186 342 17 42 chr11 105682867 105682987 -45100566 + L2 LINE L2 1790 1906 -1408 31 0 0 0 chr11 105682993 105683024 -45100529 + AT_rich Low_complexity Low_complexity 1 31 0 183 80 0 0 chr11 105684187 105684212 -45099341 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 214 338 66 33 chr11 105684385 105684536 -45099017 - L2 LINE L2 -173 3099 2944 188 368 86 20 chr11 105684646 105684798 -45098755 - L2 LINE L2 -540 2774 2613 246 386 20 0 chr11 105684925 105685026 -45098527 - L2 LINE L2 -964 2350 2248 182 392 62 36 chr11 105685248 105685442 -45098111 + L2 LINE L2 1393 1591 -1723 392 329 98 26 chr11 105685567 105685953 -45097600 + L2 LINE L2 1840 2253 -1061 400 278 33 66 chr11 105686177 105686328 -45097225 - MIR3 SINE MIR -1 207 62 23 0 0 0 chr11 105686472 105686495 -45097058 + AT_rich Low_complexity Low_complexity 1 23 0 404 280 37 0 chr11 105686833 105686940 -45096613 + MIR SINE MIR 41 151 -111 5682 259 101 25 chr11 105687246 105688581 -45094972 + L2 LINE L2 96 1327 -1987 1926 125 0 64 chr11 105688581 105688909 -45094644 + AluSg SINE Alu 1 307 -3 5682 259 101 25 chr11 105688909 105689123 -45094430 + L2 LINE L2 1327 1523 -1791 3134 101 123 8 chr11 105689123 105689620 -45093933 + MER41A LTR ERV1 1 554 0 5682 259 101 25 chr11 105689620 105690042 -45093511 + L2 LINE L2 1523 2219 -1095 427 95 27 0 chr11 105690057 105690131 -45093422 + (CA)n Simple_repeat Simple_repeat 2 77 0 10422 204 29 11 chr11 105690581 105690691 -45092862 + L1P LINE L1 2255 2362 -3784 1923 158 3 0 chr11 105690691 105690994 -45092559 + AluSx SINE Alu 1 304 -8 10422 204 29 11 chr11 105690994 105693556 -45089997 + L1P LINE L1 2362 4964 -1182 207 214 232 0 chr11 105694408 105694464 -45089089 - L2 LINE L2 -5 3267 3199 345 100 0 0 chr11 105694846 105694896 -45088657 + (CA)n Simple_repeat Simple_repeat 2 51 0 32 26 0 0 chr11 105695107 105695146 -45088407 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr11 105695621 105695646 -45087907 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr11 105695739 105695774 -45087779 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr11 105697139 105697173 -45086380 + AT_rich Low_complexity Low_complexity 1 34 0 28 61 0 0 chr11 105697466 105697515 -45086038 + AT_rich Low_complexity Low_complexity 1 49 0 218 225 200 38 chr11 105698023 105698103 -45085450 + MIR SINE MIR 30 122 -86 187 361 28 0 chr11 105698113 105698185 -45085368 + MIR3 SINE MIR 85 158 -50 203 301 98 30 chr11 105698219 105698352 -45085201 - MER5A DNA MER1_type -46 143 2 190 339 0 0 chr11 105698428 105698487 -45085066 + L2 LINE L2 3250 3308 -5 230 316 0 0 chr11 105698487 105698544 -45085009 + polypurine Low_complexity Low_complexity 5 61 0 517 276 58 6 chr11 105699596 105699752 -45083801 + MIR SINE MIR 96 259 -3 1092 267 124 27 chr11 105700941 105701391 -45082162 + MLT1J LTR MaLR 4 497 -14 2357 79 0 22 chr11 105701548 105701866 -45081687 - AluY SINE Alu 0 311 1 189 0 0 0 chr11 105701867 105701888 -45081665 + (TTTTTG)n Simple_repeat Simple_repeat 5 25 0 668 174 65 39 chr11 105701888 105702043 -45081510 - L1MC3 LINE L1 -206 7579 7421 1420 188 171 6 chr11 105702043 105702383 -45081170 + MSTD LTR MaLR 1 396 0 8132 173 78 63 chr11 105702383 105702618 -45080935 - L1MC3 LINE L1 -360 7425 7195 237 304 10 10 chr11 105702618 105702720 -45080833 - MLT1F1 LTR MaLR -445 122 21 8132 173 78 63 chr11 105702720 105704351 -45079202 - L1MC3 LINE L1 -590 7195 5430 317 233 57 52 chr11 105704413 105704531 -45079022 - MIR3 SINE MIR -38 170 52 8266 209 93 17 chr11 105706071 105708379 -45075174 - L1M3c LINE L1 -3681 3167 997 180 111 0 0 chr11 105708439 105708466 -45075087 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1821 272 40 31 chr11 105708470 105709221 -45074332 - L1MEc LINE L1 -4322 2074 1317 1760 266 53 37 chr11 105709304 105710120 -45073433 - L1MEc LINE L1 -5239 1157 329 241 162 378 0 chr11 105710142 105710216 -45073337 - L1MEc LINE L1 -6192 204 103 268 258 106 53 chr11 105710315 105710447 -45073106 - L2 LINE L2 0 3272 3134 203 53 18 70 chr11 105710735 105710792 -45072761 + (TATAA)n Simple_repeat Simple_repeat 2 55 0 477 293 35 35 chr11 105710936 105711110 -45072443 - MIR SINE MIR -72 190 17 2844 127 12 5 chr11 105711113 105711540 -45072013 + MER57B LTR ERV1 1 430 -4 4080 131 63 3 chr11 105711546 105712181 -45071372 + MER57B-int LTR ERV1 3 675 -6862 3309 139 43 8 chr11 105712175 105712902 -45070651 + HUERS-P1 LTR ERV1 288 1135 -4811 * 1606 215 85 6 chr11 105712898 105713252 -45070301 + HUERS-P1 LTR ERV1 1990 2371 -5166 * 1093 98 12 9 chr11 105713247 105713424 -45070129 + HUERS-P1 LTR ERV1 1498 2017 -3929 * 2541 152 28 21 chr11 105713400 105714188 -45069365 + HUERS-P1 LTR ERV1 2167 4277 -1986 * 11803 105 107 64 chr11 105714179 105715941 -45067612 + HUERS-P1 LTR ERV1 5307 7179 -358 2052 119 10 0 chr11 105715941 105716234 -45067319 - AluSp SINE Alu -15 298 3 11803 105 107 64 chr11 105716234 105716610 -45066943 + HUERS-P1 LTR ERV1 7179 7537 0 2963 125 5 0 chr11 105716610 105717042 -45066511 + MER57B LTR ERV1 1 434 0 457 288 67 37 chr11 105717331 105717734 -45065819 + L1ME LINE L1 5405 5819 -302 21 0 0 0 chr11 105717901 105717922 -45065631 + AT_rich Low_complexity Low_complexity 1 21 0 1184 220 31 57 chr11 105718755 105719141 -45064412 - MER69 DNA AcHobo 0 2526 2151 316 160 0 0 chr11 105719172 105719222 -45064331 - MER4D LTR ERV1 -822 50 1 4961 143 27 24 chr11 105719276 105719969 -45063584 + MER4D LTR ERV1 56 754 -149 2254 129 19 22 chr11 105719969 105720334 -45063219 + THE1B LTR MaLR 1 364 0 4961 143 27 24 chr11 105720334 105720485 -45063068 + MER4D LTR ERV1 754 903 0 2666 267 77 14 chr11 105720488 105721255 -45062298 - MER69 DNA AcHobo -411 815 1 590 149 0 70 chr11 105722569 105722683 -45060870 + FRAM SINE Alu 53 158 -18 745 305 72 7 chr11 105722869 105723286 -45060267 + L1MC/D LINE L1 5298 5741 -2067 347 184 112 31 chr11 105723435 105723533 -45060020 + HAL1 LINE L1 2313 2418 -89 1660 210 22 14 chr11 105724364 105724726 -45058827 + MLT1A1 LTR MaLR 1 365 0 237 132 0 0 chr11 105724837 105724875 -45058678 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 437 76 15 0 chr11 105725011 105725077 -45058476 + (CA)n Simple_repeat Simple_repeat 1 67 0 225 293 41 8 chr11 105725100 105725223 -45058330 + (CATATA)n Simple_repeat Simple_repeat 3 129 0 216 0 0 0 chr11 105725235 105725259 -45058294 + (TG)n Simple_repeat Simple_repeat 2 25 0 315 255 104 0 chr11 105725657 105725763 -45057790 - L2 LINE L2 0 3313 3197 226 333 0 0 chr11 105726345 105726408 -45057145 + tRNA-Ile-ATT tRNA tRNA 11 73 -4 338 276 0 0 chr11 105726937 105727024 -45056529 - MIR SINE MIR -5 257 171 309 241 26 52 chr11 105727195 105727311 -45056242 - MIR SINE MIR -25 237 125 273 274 37 7 chr11 105727348 105727483 -45056070 - L1M LINE L1 -783 5401 5263 2412 274 61 22 chr11 105727484 105728632 -45054921 - L1M4 LINE L1 -1977 4169 2977 4184 193 45 24 chr11 105728640 105729715 -45053838 + L1MDa LINE L1 971 2067 -4473 317 319 44 123 chr11 105729904 105730384 -45053169 - L2 LINE L2 0 3272 2831 455 333 41 36 chr11 105731013 105731232 -45052321 - MIR SINE MIR -32 230 11 245 263 105 0 chr11 105731222 105731298 -45052255 - MIR SINE MIR -79 183 100 * 26 0 0 0 chr11 105732536 105732562 -45050991 + AT_rich Low_complexity Low_complexity 1 26 0 226 208 0 57 chr11 105732647 105732700 -45050853 - L2 LINE L2 0 3272 3223 958 270 126 52 chr11 105734878 105735412 -45048141 + L2 LINE L2 1352 1924 -1390 826 304 75 30 chr11 105735419 105735860 -45047693 + L2 LINE L2 2847 3307 -6 385 318 14 64 chr11 105735945 105736165 -45047388 - MIR SINE MIR -38 224 16 1062 152 184 8 chr11 105736766 105737016 -45046537 - MER33 DNA MER1_type -25 299 6 28 61 0 0 chr11 105737160 105737209 -45046344 + AT_rich Low_complexity Low_complexity 1 49 0 235 356 0 11 chr11 105737283 105737370 -45046183 - L3 LINE CR1 -10 1567 1482 273 242 16 0 chr11 105737444 105737506 -45046047 - MIR SINE MIR -108 154 92 * 849 315 144 14 chr11 105737498 105738053 -45045500 - L3 LINE CR1 -102 1475 849 379 363 113 31 chr11 105738481 105738801 -45044752 + L2 LINE L2 2927 3272 0 317 223 149 33 chr11 105738802 105738923 -45044630 - MIR SINE MIR -77 185 51 560 241 35 20 chr11 105739514 105739713 -45043840 - L1ME4a LINE L1 -260 5861 5660 336 24 0 0 chr11 105740098 105740139 -45043414 + (GA)n Simple_repeat Simple_repeat 1 41 0 630 44 26 26 chr11 105740646 105740760 -45042793 + (TCTA)n Simple_repeat Simple_repeat 4 117 0 6865 144 17 35 chr11 105740760 105741220 -45042333 - Tigger3b DNA MER2_type -1798 1230 763 1986 146 20 23 chr11 105741220 105741610 -45041943 - L1PA13 LINE L1 0 6163 5775 6865 144 17 35 chr11 105741610 105742388 -45041165 - Tigger3b DNA MER2_type -2265 763 14 246 116 0 0 chr11 105742402 105742445 -45041108 + (CA)n Simple_repeat Simple_repeat 2 44 0 1654 179 13 32 chr11 105742577 105742889 -45040664 - AluJo SINE Alu -6 306 1 286 335 95 34 chr11 105743208 105743533 -45040020 + L2 LINE L2 2296 2640 -674 423 303 37 0 chr11 105743710 105743819 -45039734 - L2 LINE L2 -1 3312 3200 192 259 19 37 chr11 105743840 105743894 -45039659 + MIR SINE MIR 15 67 -195 222 91 0 0 chr11 105743917 105743950 -45039603 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 559 290 150 45 chr11 105743960 105744458 -45039095 - L2 LINE L2 -15 3298 2762 275 213 213 0 chr11 105744453 105744528 -45039025 + MIR SINE MIR 96 186 -76 * 237 404 86 0 chr11 105744558 105744709 -45038844 - L2 LINE L2 -5 3267 3104 415 341 50 6 chr11 105744738 105744920 -45038633 + L2 LINE L2 2550 2739 -575 240 337 12 0 chr11 105744904 105744987 -45038566 - L2 LINE L2 0 3313 3230 * 990 279 88 23 chr11 105745089 105745562 -45037991 - MER115 DNA AcHobo -26 667 84 7063 54 1 9 chr11 105745603 105746594 -45036959 + L1PA5 LINE L1 5171 6154 0 267 31 0 0 chr11 105746604 105746636 -45036917 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 223 307 32 78 chr11 105746733 105746951 -45036602 + L2 LINE L2 2868 3075 -197 573 244 0 8 chr11 105746982 105747105 -45036448 + MLT1H1 LTR MaLR 115 236 -354 2136 89 40 0 chr11 105747114 105747418 -45036135 + L1PB1 LINE L1 5836 6151 0 21 0 0 0 chr11 105747418 105747439 -45036114 + AT_rich Low_complexity Low_complexity 1 21 0 584 282 58 5 chr11 105747492 105747680 -45035873 + MLT1H1 LTR MaLR 226 423 -132 1996 148 0 3 chr11 105747768 105748059 -45035494 - AluSx SINE Alu -22 290 1 25 0 0 0 chr11 105748162 105748187 -45035366 + AT_rich Low_complexity Low_complexity 1 25 0 791 210 119 99 chr11 105748201 105748596 -45034957 + MLT1A1 LTR MaLR 1 403 -25 496 202 20 0 chr11 105749167 105749266 -45034287 + MLT1G LTR MaLR 1 101 -489 946 272 4 4 chr11 105749274 105749520 -45034033 + MLT1H1 LTR MaLR 310 555 0 674 251 76 6 chr11 105750291 105750489 -45033064 + MIR SINE MIR 33 248 -14 577 336 51 5 chr11 105751331 105751548 -45032005 - MIR SINE MIR -15 247 21 288 325 134 0 chr11 105751626 105751783 -45031770 - MIR SINE MIR -36 226 49 256 292 75 0 chr11 105752526 105752646 -45030907 - L1ME4a LINE L1 -12 6109 5981 384 262 104 11 chr11 105752698 105752881 -45030672 - L1ME4a LINE L1 -239 5882 5683 655 339 72 22 chr11 105755939 105756258 -45027295 - L3 LINE CR1 -1076 501 167 254 280 80 10 chr11 105756315 105756415 -45027138 + L3 LINE CR1 700 806 -771 34 55 0 0 chr11 105756440 105756495 -45027058 + AT_rich Low_complexity Low_complexity 1 55 0 1181 233 33 19 chr11 105757295 105757659 -45025894 - LTR10C LTR ERV1 -26 529 188 207 0 0 0 chr11 105757679 105757702 -45025851 + (TA)n Simple_repeat Simple_repeat 1 23 0 257 326 7 83 chr11 105758521 105758665 -45024888 + MLT1K LTR MaLR 98 230 -358 331 303 110 14 chr11 105758781 105758926 -45024627 + L3 LINE CR1 1317 1475 -102 1130 78 30 6 chr11 105759184 105759350 -45024203 - L1PA10 LINE L1 0 6168 5999 1585 167 17 51 chr11 105759443 105759771 -45023782 + AluJo SINE Alu 1 318 0 379 260 41 71 chr11 105761414 105761610 -45021943 + HAL1 LINE L1 4 193 -2314 1763 92 121 0 chr11 105761760 105762009 -45021544 - AluSc SINE Alu -30 279 1 180 0 0 0 chr11 105762274 105762294 -45021259 + (A)n Simple_repeat Simple_repeat 1 20 0 29 28 0 0 chr11 105762926 105762962 -45020591 + AT_rich Low_complexity Low_complexity 1 36 0 391 326 129 27 chr11 105763012 105763499 -45020054 - L2 LINE L2 -785 2529 1993 1375 303 67 8 chr11 105763648 105764143 -45019410 + L2 LINE L2 1089 1612 -1702 211 438 21 0 chr11 105764529 105764625 -45018928 - L2 LINE L2 0 3272 3175 187 330 6 136 chr11 105764623 105764799 -45018754 + L2 LINE L2 3027 3179 -93 * 1942 131 7 0 chr11 105764936 105765242 -45018311 - AluSq SINE Alu 0 308 1 477 261 43 31 chr11 105765434 105765595 -45017958 + MIR SINE MIR 97 259 -3 1997 152 42 54 chr11 105765917 105766344 -45017209 - MSTC LTR MaLR 0 428 7 217 122 0 41 chr11 105767444 105767493 -45016060 + (GAA)n Simple_repeat Simple_repeat 2 48 0 198 279 16 0 chr11 105767615 105767676 -45015877 - L2 LINE L2 -349 2965 2904 291 339 40 8 chr11 105767814 105767938 -45015615 + MLT1K LTR MaLR 23 150 -438 573 244 57 38 chr11 105768016 105768225 -45015328 + MLT1K LTR MaLR 301 513 -75 487 294 35 12 chr11 105768758 105768928 -45014625 + MIR SINE MIR 16 189 -73 195 250 83 36 chr11 105769148 105769232 -45014321 + L2 LINE L2 2977 3064 -208 254 250 0 0 chr11 105769348 105769400 -45014153 + L2 LINE L2 3255 3306 -7 198 0 0 0 chr11 105769683 105769705 -45013848 + (CA)n Simple_repeat Simple_repeat 2 23 0 941 275 28 0 chr11 105770836 105771083 -45012470 + MIR SINE MIR 7 260 -2 451 313 47 0 chr11 105771123 105771251 -45012302 - L2 LINE L2 0 3313 3180 189 0 0 0 chr11 105771254 105771275 -45012278 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 575 316 65 13 chr11 105772038 105772269 -45011284 + MIR SINE MIR 3 245 -17 418 209 43 166 chr11 105773181 105773260 -45010293 + MER5A DNA MER1_type 2 89 -100 2411 85 3 3 chr11 105773260 105773567 -45009986 - AluSc SINE Alu -2 307 1 418 209 43 166 chr11 105773567 105773698 -45009855 + MER5A DNA MER1_type 89 186 -3 292 175 0 0 chr11 105774140 105774197 -45009356 - L1MA9 LINE L1 -275 6037 5981 1846 130 0 0 chr11 105774201 105774470 -45009083 - AluSg SINE Alu 0 310 42 949 129 137 62 chr11 105774475 105774731 -45008822 + L1MA9 LINE L1 6032 6306 -6 1356 279 34 32 chr11 105774964 105775357 -45008196 + LTR16A LTR ERVL 3 399 -51 1820 194 6 6 chr11 105775357 105775717 -45007836 - MLT1A1 LTR MaLR -3 362 3 1356 279 34 32 chr11 105775717 105775763 -45007790 + LTR16A LTR ERVL 399 443 -7 222 91 0 0 chr11 105776107 105776140 -45007413 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 305 250 133 85 chr11 105776140 105776328 -45007225 - L2 LINE L2 -13 3300 3104 893 332 84 23 chr11 105776372 105776949 -45006604 - L2 LINE L2 -309 3004 2394 183 156 0 0 chr11 105777866 105777898 -45005655 + (TA)n Simple_repeat Simple_repeat 2 33 0 582 308 24 5 chr11 105778696 105778901 -45004652 - LTR16C LTR ERVL 0 491 283 945 317 16 8 chr11 105778901 105779270 -45004283 - LTR16B LTR ERVL 0 464 93 2752 336 39 7 chr11 105779430 105780780 -45002773 + HERV16 LTR ERVL 76 1467 -3529 2575 301 59 43 chr11 105780798 105783615 -44999938 + HERV16 LTR ERVL 1572 4473 -887 3550 119 68 3 chr11 105785537 105786106 -44997447 - L1PA16 LINE L1 0 6166 5561 427 152 0 0 chr11 105786106 105786172 -44997381 + AluJ/FLAM SINE Alu 18 83 -229 1197 241 25 11 chr11 105786194 105786555 -44996998 - MER69 DNA AcHobo 0 2526 2161 964 245 110 3 chr11 105786662 105786952 -44996601 - MER69 DNA AcHobo -887 339 19 311 361 26 83 chr11 105787008 105787274 -44996279 + L2 LINE L2 2995 3245 -27 323 271 242 0 chr11 105788103 105788257 -44995296 + MIR SINE MIR 21 207 -55 349 250 12 12 chr11 105788956 105789036 -44994517 - L2 LINE L2 -4 3309 3230 335 212 15 36 chr11 105790903 105790917 -44992636 - L1MC3 LINE L1 -2 7783 7770 2164 107 0 3 chr11 105790917 105791243 -44992310 + AluSg SINE Alu 1 325 0 335 212 15 36 chr11 105791243 105791389 -44992164 - L1MC3 LINE L1 -15 7770 6198 917 189 0 42 chr11 105791642 105791833 -44991720 + AluJo SINE Alu 120 302 -10 7506 136 37 18 chr11 105791833 105793160 -44990393 + Tigger2 DNA MER2_type 794 2145 -573 279 0 0 0 chr11 105793416 105793447 -44990106 + (A)n Simple_repeat Simple_repeat 1 31 0 229 200 0 0 chr11 105793893 105793943 -44989610 + (TG)n Simple_repeat Simple_repeat 1 50 0 224 229 21 0 chr11 105793942 105793990 -44989563 + GA-rich Low_complexity Low_complexity 1 49 0 * 21 0 0 0 chr11 105794100 105794121 -44989432 + AT_rich Low_complexity Low_complexity 1 21 0 7463 37 7 2 chr11 105794517 105800043 -44983510 + L1PA4 LINE L1 487 6153 -2 962 196 46 39 chr11 105800725 105800985 -44982568 - L1ME2 LINE L1 -10 6154 5893 542 95 0 14 chr11 105801432 105801506 -44982047 - Tigger5 DNA MER2_type 0 2323 2251 312 164 18 18 chr11 105801475 105801530 -44982023 - Tigger5 DNA MER2_type -2268 55 1 * 301 302 142 25 chr11 105801825 105802143 -44981410 - HAL1b LINE L1 -739 609 255 372 94 0 0 chr11 105802451 105802504 -44981049 + (T)n Simple_repeat Simple_repeat 1 53 0 829 172 81 0 chr11 105802866 105803052 -44980501 + L1MB8 LINE L1 5970 6170 -8 336 194 0 0 chr11 105803316 105803378 -44980175 + L1MB7 LINE L1 6062 6123 -61 2318 74 0 7 chr11 105803378 105803676 -44979877 - AluY SINE Alu -15 296 1 1685 120 3 28 chr11 105804895 105805178 -44978375 - AluSx SINE Alu -36 276 1 2200 119 3 0 chr11 105805332 105805634 -44977919 + AluSx SINE Alu 5 307 -5 244 244 106 8 chr11 105806225 105806348 -44977205 - L1ME4a LINE L1 -24 6097 5963 407 227 111 23 chr11 105806447 105806619 -44976934 - L1ME4a LINE L1 -341 5780 5594 22 0 0 0 chr11 105806684 105806706 -44976847 + AT_rich Low_complexity Low_complexity 1 22 0 2004 154 71 45 chr11 105807778 105808201 -44975352 - Tigger2a DNA MER2_type 0 434 1 1059 196 5 5 chr11 105808503 105808692 -44974861 - MER5A DNA MER1_type 0 189 1 1484 211 7 10 chr11 105809144 105809438 -44974115 - AluJb SINE Alu -19 293 1 1066 158 0 0 chr11 105810607 105810772 -44972781 - AluSg/x SINE Alu -12 300 136 21 0 0 0 chr11 105810781 105810802 -44972751 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr11 105811040 105811072 -44972481 + AT_rich Low_complexity Low_complexity 1 32 0 874 127 8 0 chr11 105811075 105811201 -44972352 - FLAM_C SINE Alu -6 127 1 432 291 73 24 chr11 105812403 105812568 -44970985 - MIR3 SINE MIR -17 191 19 280 353 120 38 chr11 105812867 105813000 -44970553 - L2 LINE L2 -12 3260 3117 36 23 0 0 chr11 105813315 105813358 -44970195 + AT_rich Low_complexity Low_complexity 1 43 0 913 182 13 6 chr11 105814309 105814468 -44969085 - AluSg/x SINE Alu -21 291 132 2758 0 0 0 chr11 105814469 105814763 -44968790 - AluYa5 SINE Alu -17 294 1 215 343 105 9 chr11 105814772 105814877 -44968676 + L2 LINE L2 2977 3091 -181 1859 144 4 7 chr11 105816200 105816477 -44967076 + AluJb SINE Alu 16 291 -21 713 298 56 53 chr11 105816516 105816835 -44966718 - L2 LINE L2 0 3313 2994 263 202 48 0 chr11 105817134 105817218 -44966335 + (TA)n Simple_repeat Simple_repeat 1 88 0 320 347 46 36 chr11 105817816 105818035 -44965518 - MIR SINE MIR -6 256 36 384 223 46 91 chr11 105818359 105818534 -44965019 + MIR SINE MIR 94 260 -2 23 54 0 0 chr11 105818798 105818835 -44964718 + AT_rich Low_complexity Low_complexity 1 37 0 9136 101 3 8 chr11 105819046 105820309 -44963244 - THE1B-int LTR MaLR -323 1257 1 1945 155 21 51 chr11 105820309 105820684 -44962869 - THE1B LTR MaLR 0 364 1 635 145 0 26 chr11 105820685 105820802 -44962751 + L1PB4 LINE L1 6040 6153 -3 1146 265 69 100 chr11 105820847 105821380 -44962173 + MLT1G1 LTR MaLR 1 514 -81 1525 199 3 26 chr11 105821380 105821682 -44961871 + AluJo SINE Alu 5 299 -13 1146 265 69 100 chr11 105821682 105821760 -44961793 + MLT1G1 LTR MaLR 514 593 -2 347 307 161 18 chr11 105822021 105822406 -44961147 + L1ME4a LINE L1 5453 5884 -237 242 241 60 69 chr11 105822496 105822612 -44960941 + L1M4 LINE L1 4806 4920 -1226 1711 164 24 7 chr11 105822658 105822950 -44960603 - AluSx SINE Alu -15 297 1 378 357 31 19 chr11 105823054 105823312 -44960241 + L1M4 LINE L1 5039 5299 -847 1908 96 4 0 chr11 105823652 105823901 -44959652 + AluSx SINE Alu 1 250 -62 2104 84 7 4 chr11 105824001 105824276 -44959277 - AluSc SINE Alu -33 276 1 729 352 22 29 chr11 105824610 105824887 -44958666 - ERVL LTR ERVL -341 5423 5146 2153 140 13 21 chr11 105824887 105825265 -44958288 + THE1C LTR MaLR 1 375 0 10102 117 12 48 chr11 105825265 105826903 -44956650 + THE1C-int LTR MaLR 1 1580 0 2034 155 13 29 chr11 105826903 105827284 -44956269 + THE1C LTR MaLR 1 375 0 729 352 22 29 chr11 105827284 105827459 -44956094 - ERVL LTR ERVL -615 5149 4972 2763 163 40 24 chr11 105827561 105828188 -44955365 - L1 LINE L1 -1263 4883 4247 490 228 166 0 chr11 105828202 105828347 -44955206 + MER5C DNA MER1_type 52 220 -104 1283 157 5 5 chr11 105828348 105828558 -44954995 + MER2 DNA MER2_type 1 210 -135 252 209 0 0 chr11 105828597 105828640 -44954913 + MER2 DNA MER2_type 284 326 -19 398 188 42 0 chr11 105828641 105828737 -44954816 + MER5C DNA MER1_type 219 318 -6 346 266 127 25 chr11 105829003 105829161 -44954392 - MIR SINE MIR -86 176 3 622 317 89 34 chr11 105830786 105831111 -44952442 - ERVL LTR ERVL -772 4992 4650 1840 296 25 44 chr11 105831144 105831895 -44951658 - ERVL LTR ERVL -1132 4522 3786 761 203 0 7 chr11 105832101 105832244 -44951309 + L1PB4 LINE L1 5902 6043 -113 2269 112 25 35 chr11 105832244 105832611 -44950942 - THE1B LTR MaLR 0 364 2 447 150 0 0 chr11 105832612 105832692 -44950861 - THE1B-int LTR MaLR 0 1580 1501 504 117 0 0 chr11 105833012 105833089 -44950464 + (CA)n Simple_repeat Simple_repeat 2 78 0 246 300 88 0 chr11 105833807 105833882 -44949671 + MLT1J LTR MaLR 11 92 -419 764 201 32 0 chr11 105833882 105834036 -44949517 + MLT1E1 LTR MaLR 1 159 -495 1209 211 18 0 chr11 105834040 105834263 -44949290 + MLT1E LTR MaLR 367 593 0 344 289 37 15 chr11 105834273 105834408 -44949145 + MLT1J LTR MaLR 99 236 -275 453 319 39 11 chr11 105835394 105835576 -44947977 + MIR SINE MIR 76 262 0 2811 161 75 6 chr11 105836145 105836637 -44946916 + Tigger7 DNA MER2_type 1 526 -1961 599 154 0 0 chr11 105836631 105836722 -44946831 + Tigger7 DNA MER2_type 2396 2486 -1 * 690 165 33 0 chr11 105836854 105836975 -44946578 + FLAM_A SINE Alu 1 125 -8 40 37 0 0 chr11 105839439 105839493 -44944060 + AT_rich Low_complexity Low_complexity 1 54 0 21 57 0 0 chr11 105839760 105839795 -44943758 + AT_rich Low_complexity Low_complexity 1 35 0 265 186 51 0 chr11 105840373 105840432 -44943121 - L1ME3A LINE L1 -101 6052 5991 5543 104 25 45 chr11 105840504 105841394 -44942159 - MER4D LTR ERV1 0 872 1 340 226 177 32 chr11 105841421 105841607 -44941946 - L1ME3A LINE L1 -219 5930 5718 1084 285 52 0 chr11 105841608 105841934 -44941619 - LTR16C LTR ERVL 0 491 149 387 340 51 28 chr11 105842195 105842448 -44941105 - ERVL LTR ERVL -381 5383 5125 306 280 44 55 chr11 105842717 105842899 -44940654 - L1ME3A LINE L1 -1894 4235 4056 1311 275 51 79 chr11 105842907 105843118 -44940435 - L1ME3A LINE L1 -2313 3816 3601 2150 121 0 3 chr11 105843118 105843415 -44940138 + AluSx SINE Alu 3 298 -14 1311 275 51 79 chr11 105843415 105844121 -44939432 - L1ME3A LINE L1 -2528 3601 2877 1544 173 81 0 chr11 105844121 105844143 -44939410 - AluJb SINE Alu -4 308 289 441 0 0 0 chr11 105844143 105844192 -44939361 + (TG)n Simple_repeat Simple_repeat 2 50 0 1544 173 81 0 chr11 105844192 105844332 -44939221 - AluJb SINE Alu -23 289 162 198 91 0 0 chr11 105844332 105844365 -44939188 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1544 173 81 0 chr11 105844365 105844485 -44939068 - AluJb SINE Alu -150 162 2 1311 275 51 79 chr11 105844485 105844555 -44938998 - L1ME3A LINE L1 -3252 2877 2807 2346 99 0 0 chr11 105844555 105844857 -44938696 - AluSx SINE Alu -10 302 1 1311 275 51 79 chr11 105844857 105845058 -44938495 - L1ME3A LINE L1 -3322 2807 2659 358 332 103 15 chr11 105845076 105845465 -44938088 - L1ME3A LINE L1 -5245 874 452 4397 186 25 24 chr11 105845809 105846374 -44937179 - L1MB7 LINE L1 -14 6170 5607 1845 161 0 13 chr11 105846374 105846678 -44936875 - AluJb SINE Alu -12 300 1 4397 186 25 24 chr11 105846678 105847559 -44935994 - L1MB7 LINE L1 -577 5607 4730 333 325 52 52 chr11 105848171 105848343 -44935210 + MLT1L LTR MaLR 363 537 -78 431 188 66 88 chr11 105848343 105848524 -44935029 - MER104 DNA MER2_type 0 180 4 333 325 52 52 chr11 105848524 105848603 -44934950 + MLT1L LTR MaLR 536 614 -1 871 289 130 21 chr11 105848777 105849154 -44934399 + LTR33A LTR ERVL 92 509 -14 1305 324 46 6 chr11 105849838 105850313 -44933240 + MLT1K LTR MaLR 49 542 -46 1744 142 87 29 chr11 105850746 105851092 -44932461 + THE1C LTR MaLR 1 366 -9 2317 93 0 0 chr11 105851640 105851931 -44931622 + AluY SINE Alu 1 291 -20 191 170 43 43 chr11 105852986 105853033 -44930520 - L2 LINE L2 0 3313 3267 228 205 0 0 chr11 105853079 105853118 -44930435 + L2 LINE L2 3254 3292 -21 2202 107 7 3 chr11 105854543 105854832 -44928721 + AluSx SINE Alu 2 291 -21 1927 127 7 27 chr11 105854839 105855138 -44928415 + AluSx SINE Alu 1 293 -19 6161 124 23 10 chr11 105855138 105855869 -44927684 + L1MA4A LINE L1 5324 6071 -232 1872 150 28 0 chr11 105855869 105856156 -44927397 + AluSx SINE Alu 1 295 -17 6161 124 23 10 chr11 105856156 105856391 -44927162 + L1MA4A LINE L1 6071 6302 -1 317 296 125 0 chr11 105856392 105856568 -44926985 + L1M4 LINE L1 3264 3461 -2685 1813 179 3 0 chr11 105856838 105857140 -44926413 + AluJb SINE Alu 1 303 -9 256 271 29 0 chr11 105857349 105857419 -44926134 + L1M3d LINE L1 708 779 -5524 4870 220 81 33 chr11 105857531 105857783 -44925770 + L1M3d LINE L1 804 1043 -5339 2079 130 7 3 chr11 105857783 105858076 -44925477 + AluSq SINE Alu 1 294 -19 4870 220 81 33 chr11 105858076 105858366 -44925187 + L1M3d LINE L1 1043 1318 -5064 2318 189 52 2 chr11 105858366 105858774 -44924779 - MSTA LTR MaLR 0 428 1 4870 220 81 33 chr11 105858774 105860658 -44922895 + L1M3d LINE L1 1318 3661 -2721 2451 171 90 29 chr11 105860658 105861138 -44922415 + LTR22 LTR ERVK 1 509 0 46225 78 6 4 chr11 105861138 105865755 -44917798 + HERVK22 LTR ERVK 1 4638 -2199 2290 68 4 0 chr11 105865755 105866065 -44917488 - AluY SINE Alu 0 311 1 46225 78 6 4 chr11 105866065 105867356 -44916197 + HERVK22 LTR ERVK 4638 5924 -913 477 139 0 18 chr11 105867374 105867465 -44916088 + L1M3 LINE L1 5584 5672 -499 2383 80 0 20 chr11 105867470 105867772 -44915781 + AluY SINE Alu 5 300 -11 332 223 218 40 chr11 105867917 105868119 -44915434 - L2 LINE L2 -1 3312 3075 1770 224 19 46 chr11 105868123 105868274 -44915279 - L1ME3A LINE L1 0 6170 6016 2360 102 0 0 chr11 105868274 105868579 -44914974 + AluSx SINE Alu 1 305 -7 1770 224 19 46 chr11 105868579 105868946 -44914607 - L1ME3A LINE L1 -154 6016 5666 1779 128 81 34 chr11 105868998 105869296 -44914257 + AluSx SINE Alu 1 312 0 241 130 0 37 chr11 105869296 105869350 -44914203 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 401 291 67 18 chr11 105869353 105869518 -44914035 - L2 LINE L2 -277 3036 2864 2150 90 9 50 chr11 105869591 105869765 -44913788 - AluSp SINE Alu -4 309 152 2457 60 0 10 chr11 105869765 105870063 -44913490 - AluY SINE Alu -12 299 5 2150 90 9 50 chr11 105870063 105870210 -44913343 - AluSp SINE Alu -161 152 1 2149 119 7 3 chr11 105870531 105870833 -44912720 - AluSx SINE Alu -8 304 2 228 205 0 0 chr11 105872257 105872296 -44911257 - L2 LINE L2 -21 3292 3254 439 224 36 151 chr11 105872754 105872946 -44910607 + MER91A DNA MER1_type 1 170 -26 467 288 77 6 chr11 105873107 105873277 -44910276 + MIR3 SINE MIR 20 201 -7 1022 82 0 7 chr11 105874413 105874548 -44909005 + AluSp/q SINE Alu 173 306 -7 235 329 26 0 chr11 105875669 105875745 -44907808 - MIR3 SINE MIR -23 185 108 1532 179 40 64 chr11 105875892 105876266 -44907287 - MLT1A1 LTR MaLR 0 365 1 396 381 22 14 chr11 105876280 105876503 -44907050 - MIR SINE MIR -35 227 3 211 224 80 30 chr11 105877446 105877540 -44906013 - MIR SINE MIR -138 70 6 242 312 83 9 chr11 105877677 105877786 -44905767 + MIR SINE MIR 112 228 -34 4672 136 17 4 chr11 105880658 105881372 -44902181 + L1PA16 LINE L1 5443 6165 -1 4321 144 81 18 chr11 105883079 105883817 -44899736 + LTR1 LTR ERV1 1 785 0 633 306 61 22 chr11 105884544 105884773 -44898780 - MIR SINE MIR -1 261 24 306 292 50 25 chr11 105884941 105885061 -44898492 + MIR SINE MIR 84 206 -56 3212 266 134 24 chr11 105885336 105886455 -44897098 - L2 LINE L2 -99 3214 1901 1793 131 30 0 chr11 105886455 105886722 -44896831 - AluSx SINE Alu -37 275 1 3212 266 134 24 chr11 105886722 105886952 -44896601 - L2 LINE L2 -1412 1901 1698 342 0 0 0 chr11 105887505 105887543 -44896010 + (TAA)n Simple_repeat Simple_repeat 1 38 0 365 301 83 13 chr11 105888280 105888436 -44895117 - MER5A DNA MER1_type -6 183 17 516 263 66 22 chr11 105889012 105889149 -44894404 + L2 LINE L2 3129 3271 -1 947 285 52 29 chr11 105889253 105889635 -44893918 + MLT1I LTR MaLR 17 407 -2 468 235 91 11 chr11 105890410 105890556 -44892997 + MIR3 SINE MIR 7 161 -87 390 360 63 9 chr11 105892056 105892278 -44891275 + MIR SINE MIR 29 262 0 4321 126 18 0 chr11 105892747 105893365 -44890188 + L1PA16 LINE L1 5524 6152 -14 2085 106 0 34 chr11 105893385 105893677 -44889876 - AluSc SINE Alu -27 282 1 611 276 11 11 chr11 105893759 105893944 -44889609 - MIR SINE MIR -6 256 72 225 0 0 0 chr11 105894688 105894713 -44888840 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 331 291 0 0 chr11 105894724 105894803 -44888750 + L2 LINE L2 3194 3272 0 342 98 0 0 chr11 105895000 105895051 -44888502 + (TTCA)n Simple_repeat Simple_repeat 1 51 0 573 277 40 11 chr11 105895097 105895274 -44888279 - MIR SINE MIR -80 182 1 198 316 24 97 chr11 105895274 105895473 -44888080 - L2 LINE L2 -95 3177 2994 1991 174 0 0 chr11 105895527 105895838 -44887715 - AluJb SINE Alu -1 311 1 635 322 70 60 chr11 105896137 105896438 -44887115 + L2 LINE L2 2969 3272 0 26 50 0 0 chr11 105896970 105897010 -44886543 + AT_rich Low_complexity Low_complexity 1 40 0 2165 82 10 14 chr11 105897755 105898049 -44885504 + AluSg SINE Alu 1 293 -17 330 295 23 49 chr11 105898051 105898356 -44885197 + L1ME1 LINE L1 4651 4947 -1199 348 237 25 69 chr11 105898810 105899009 -44884544 + MIR SINE MIR 10 262 0 246 32 0 0 chr11 105899139 105899170 -44884383 + (TG)n Simple_repeat Simple_repeat 2 32 0 284 183 84 0 chr11 105899225 105899296 -44884257 + MER103 DNA DNA 38 114 -52 2070 89 13 29 chr11 105899505 105899819 -44883734 + AluY SINE Alu 2 310 -1 856 244 2 1 chr11 105899903 105900112 -44883441 + L1ME1 LINE L1 5465 5675 -491 1606 133 34 4 chr11 105900123 105900386 -44883167 + AluSx SINE Alu 12 282 -30 270 175 0 16 chr11 105900486 105900549 -44883004 + Alu SINE Alu 239 300 0 1321 254 53 2 chr11 105900569 105900983 -44882570 + L1ME1 LINE L1 5724 6158 -8 262 284 224 17 chr11 105901422 105901538 -44882015 + L2 LINE L2 3133 3272 0 225 0 0 0 chr11 105902351 105902376 -44881177 + (TG)n Simple_repeat Simple_repeat 1 25 0 225 0 0 0 chr11 105902375 105902400 -44881153 + (GA)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr11 105902399 105902419 -44881134 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 350 293 159 24 chr11 105903744 105903962 -44879591 + MIR SINE MIR 5 248 -14 27 49 0 0 chr11 105906012 105906053 -44877500 + AT_rich Low_complexity Low_complexity 1 41 0 830 289 143 14 chr11 105906518 105906868 -44876685 + L2 LINE L2 2906 3300 -13 228 67 0 0 chr11 105906870 105906900 -44876653 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1556 166 38 41 chr11 105906910 105907200 -44876353 + AluJb SINE Alu 1 289 -23 676 167 23 11 chr11 105907200 105907374 -44876179 + GA-rich Low_complexity Low_complexity 4 179 0 2485 46 0 7 chr11 105907616 105907921 -44875632 + AluY SINE Alu 4 306 -5 342 0 0 0 chr11 105908101 105908139 -44875414 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 1985 106 0 11 chr11 105908139 105908421 -44875132 - AluY SINE Alu -32 279 1 1091 289 94 15 chr11 105908627 105909339 -44874214 + L1MC/D LINE L1 3954 4721 -1425 343 293 80 45 chr11 105909440 105910169 -44873384 + L1MC/D LINE L1 4877 5637 -624 549 128 0 39 chr11 105910438 105910540 -44873013 + L1MCa LINE L1 747 844 -5582 388 289 113 5 chr11 105910543 105910762 -44872791 + L1M4 LINE L1 4310 4559 -1587 249 336 65 39 chr11 105911049 105911281 -44872272 - L2 LINE L2 -638 2676 2439 393 295 52 29 chr11 105911538 105911711 -44871842 + MIR SINE MIR 17 193 -69 2422 164 20 8 chr11 105912135 105912622 -44870931 - L1MC2 LINE L1 -139 6205 5713 2369 154 39 30 chr11 105912668 105913130 -44870423 - MLT1C LTR MaLR -1 466 1 333 0 0 0 chr11 105913274 105913311 -44870242 + (A)n Simple_repeat Simple_repeat 1 37 0 702 178 4 0 chr11 105913424 105913680 -44869873 + (CAT)n Simple_repeat Simple_repeat 1 257 0 735 181 3 0 chr11 105913723 105914126 -44869427 + (CAT)n Simple_repeat Simple_repeat 1 404 0 703 324 86 63 chr11 105914373 105914905 -44868648 - L2 LINE L2 -5 3267 2724 378 236 126 31 chr11 105915811 105915938 -44867615 + MIR3 SINE MIR 46 184 -24 1217 173 23 5 chr11 105916122 105916342 -44867211 - MER58A DNA MER1_type 0 224 1 202 288 17 0 chr11 105916690 105916749 -44866804 + GA-rich Low_complexity Low_complexity 1 60 0 216 374 56 19 chr11 105918054 105918161 -44865392 + L2 LINE L2 3127 3237 -35 293 243 68 0 chr11 105918312 105918386 -44865167 + L3 LINE CR1 1454 1532 -45 528 81 0 0 chr11 105918431 105918505 -44865048 + (CAGA)n Simple_repeat Simple_repeat 3 76 0 23 0 0 0 chr11 105918665 105918688 -44864865 + AT_rich Low_complexity Low_complexity 1 23 0 293 209 194 0 chr11 105919036 105919103 -44864450 + L2 LINE L2 3234 3313 0 180 176 0 0 chr11 105919631 105919665 -44863888 + (CATA)n Simple_repeat Simple_repeat 4 37 0 209 250 21 0 chr11 105920433 105920481 -44863072 + L2 LINE L2 3224 3272 0 252 0 0 0 chr11 105920523 105920551 -44863002 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 512 82 59 35 chr11 105920551 105920636 -44862917 - L1PA11 LINE L1 -5 6169 6083 239 276 13 13 chr11 105920773 105920849 -44862704 - Charlie8 DNA MER1_type 0 2417 2342 258 272 216 16 chr11 105921030 105921155 -44862398 - MIR SINE MIR 0 262 113 659 306 97 5 chr11 105921545 105921761 -44861792 - MIR SINE MIR -14 248 13 683 240 105 18 chr11 105922558 105922787 -44860766 + MIR SINE MIR 2 250 -12 2071 128 3 19 chr11 105923023 105923335 -44860218 - AluSx SINE Alu -5 307 1 1597 155 0 96 chr11 105923413 105923736 -44859817 + AluJb SINE Alu 3 294 -18 619 75 0 0 chr11 105925606 105925686 -44857867 + MADE1 DNA Mariner 1 80 0 352 212 124 66 chr11 105927548 105927685 -44855868 - MIR SINE MIR -2 260 116 1579 128 0 5 chr11 105928061 105928279 -44855274 + AluSg/x SINE Alu 81 297 -15 202 194 0 0 chr11 105928353 105928389 -44855164 + CT-rich Low_complexity Low_complexity 2 37 0 432 0 0 0 chr11 105928389 105928437 -44855116 + (CA)n Simple_repeat Simple_repeat 1 48 0 862 241 45 0 chr11 105929158 105929403 -44854150 + MER90 LTR ERV1 11 266 -309 982 230 81 0 chr11 105929409 105929631 -44853922 + MER90 LTR ERV1 375 614 0 478 270 76 85 chr11 105929756 105929990 -44853563 + MIR SINE MIR 4 225 -37 1758 134 24 21 chr11 105930052 105930366 -44853187 + AluSg SINE Alu 1 310 0 336 222 40 0 chr11 105930492 105930591 -44852962 - MER90 LTR ERV1 -309 266 164 22 0 0 0 chr11 105931032 105931054 -44852499 + AT_rich Low_complexity Low_complexity 1 22 0 789 151 0 0 chr11 105931966 105932085 -44851468 + FLAM_A SINE Alu 1 119 -14 5391 137 64 33 chr11 105932209 105932849 -44850704 - Tigger3b DNA MER2_type -1797 1231 535 2346 134 46 0 chr11 105932849 105933260 -44850293 - L1MA5 LINE L1 -2 6298 5869 5391 137 64 33 chr11 105933260 105933813 -44849740 - Tigger3b DNA MER2_type -2493 535 1 275 266 73 90 chr11 105933916 105934304 -44849249 - MLT1J LTR MaLR -74 437 1 360 82 0 0 chr11 105935295 105935344 -44848209 - MER61B LTR ERV1 0 425 377 1937 119 54 18 chr11 105935445 105935781 -44847772 - MER61B LTR ERV1 -77 348 1 2245 85 7 3 chr11 105940483 105940777 -44842776 + AluSc SINE Alu 1 295 -14 439 305 55 6 chr11 105941067 105941231 -44842322 + MIR3 SINE MIR 30 201 -7 270 241 35 0 chr11 105942423 105942481 -44841072 + polypyrimidine Low_complexity Low_complexity 1 60 0 329 200 50 12 chr11 105942905 105942985 -44840568 + L2 LINE L2 3231 3313 0 466 270 38 71 chr11 105943083 105943294 -44840259 + MIR SINE MIR 54 257 -5 2408 80 3 10 chr11 105943371 105943683 -44839870 + AluSg SINE Alu 1 310 0 183 42 0 0 chr11 105943691 105943715 -44839838 + (A)n Simple_repeat Simple_repeat 1 24 0 2049 70 4 8 chr11 105943817 105944075 -44839478 - AluY SINE Alu -22 289 33 308 232 49 106 chr11 105944085 105944175 -44839378 + MER5B DNA MER1_type 45 126 -52 360 0 0 0 chr11 105944175 105944215 -44839338 + (TG)n Simple_repeat Simple_repeat 1 40 0 308 232 49 106 chr11 105944215 105944266 -44839287 + MER5B DNA MER1_type 126 178 0 436 276 31 39 chr11 105945540 105945797 -44837756 + L2 LINE L2 2719 2973 -341 * 790 286 4 17 chr11 105945774 105946012 -44837541 + L2 LINE L2 3078 3312 -1 733 287 63 13 chr11 105946811 105947048 -44836505 + MIR SINE MIR 2 250 -12 252 0 0 0 chr11 105947209 105947237 -44836316 + (TG)n Simple_repeat Simple_repeat 1 28 0 592 270 56 20 chr11 105947812 105948008 -44835545 - MIR SINE MIR -2 260 58 288 330 34 17 chr11 105948045 105948163 -44835390 - MIR SINE MIR -123 139 20 228 300 31 117 chr11 105948244 105948467 -44835086 - L3 LINE CR1 -15 1562 1359 291 303 49 65 chr11 105948986 105949171 -44834382 + MIR SINE MIR 79 260 -2 394 299 68 87 chr11 105949174 105949689 -44833864 - L2 LINE L2 0 3272 2743 184 200 36 0 chr11 105950846 105950901 -44832652 + GA-rich Low_complexity Low_complexity 2 58 0 1570 123 8 41 chr11 105952861 105953105 -44830448 + MER46A DNA MER2_type 1 236 0 262 217 67 0 chr11 105953483 105953543 -44830010 + MIR SINE MIR 73 136 -126 1551 118 0 0 chr11 105953561 105953764 -44829789 - AluSg/x SINE Alu -25 287 85 2108 130 0 7 chr11 105954032 105954339 -44829214 + AluSg SINE Alu 3 307 -3 227 226 0 32 chr11 105955195 105955288 -44828265 + (TGGA)n Simple_repeat Simple_repeat 1 90 0 291 314 24 40 chr11 105955519 105955643 -44827910 + MIR3 SINE MIR 42 163 -45 327 308 37 9 chr11 105956478 105956585 -44826968 - MIR3 SINE MIR -24 184 75 23 0 0 0 chr11 105957762 105957785 -44825768 + AT_rich Low_complexity Low_complexity 1 23 0 202 300 62 12 chr11 105959509 105959589 -44823964 + L2 LINE L2 3153 3236 -36 265 302 12 0 chr11 105960579 105960665 -44822888 - MIR SINE MIR 0 262 176 473 214 116 161 chr11 105961048 105961315 -44822238 + MIR SINE MIR 6 260 -2 237 108 0 0 chr11 105961452 105961489 -44822064 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 368 348 128 10 chr11 105962911 105963115 -44820438 - MIR SINE MIR -14 248 21 300 158 0 0 chr11 105964667 105964724 -44818829 + T-rich Low_complexity Low_complexity 1 57 0 1605 174 10 32 chr11 105964938 105965249 -44818304 - AluJo SINE Alu -8 304 1 243 229 9 29 chr11 105965252 105965357 -44818196 + CT-rich Low_complexity Low_complexity 2 104 0 1749 164 10 19 chr11 105965413 105965723 -44817830 + AluJb SINE Alu 1 307 -5 2305 78 0 3 chr11 105965764 105966072 -44817481 + AluSc SINE Alu 1 307 0 2177 60 4 0 chr11 105966072 105966340 -44817213 + AluY SINE Alu 42 310 -1 2815 178 43 0 chr11 105966347 105966854 -44816699 + MER52A LTR ERV1 1227 1755 0 2386 77 7 0 chr11 105969330 105969627 -44813926 - AluY SINE Alu 0 311 13 231 313 98 0 chr11 105970163 105970275 -44813278 - MIR3 SINE MIR -13 195 73 231 259 71 12 chr11 105971548 105971633 -44811920 - L2 LINE L2 -2 3311 3222 242 278 0 0 chr11 105971707 105971761 -44811792 - L2 LINE L2 -227 3045 2992 378 0 0 0 chr11 105972452 105972494 -44811059 + (CA)n Simple_repeat Simple_repeat 1 42 0 2294 110 7 0 chr11 105973239 105973540 -44810013 - AluSx SINE Alu -9 303 1 401 291 256 6 chr11 105975473 105975645 -44807908 + MIR SINE MIR 36 250 -12 1348 279 139 22 chr11 105975700 105976467 -44807086 + HAL1 LINE L1 1651 2507 0 342 293 50 77 chr11 105977697 105977878 -44805675 - MIR SINE MIR -6 256 81 28 71 0 0 chr11 105977907 105977963 -44805590 + AT_rich Low_complexity Low_complexity 1 56 0 204 225 0 0 chr11 105978032 105978072 -44805481 + CT-rich Low_complexity Low_complexity 2 41 0 197 308 90 26 chr11 105978095 105978173 -44805380 - L2 LINE L2 -43 3229 3147 227 263 74 21 chr11 105978257 105978352 -44805201 - L2 LINE L2 -71 3201 3102 824 280 23 110 chr11 105979729 105980432 -44803121 - L2 LINE L2 -9 3263 2626 264 211 0 0 chr11 105982239 105982291 -44801262 + L2 LINE L2 3262 3313 0 295 267 0 23 chr11 105982665 105982751 -44800802 + L2 LINE L2 3230 3313 0 350 264 224 8 chr11 105983027 105983152 -44800401 + MIR SINE MIR 8 159 -103 557 324 46 13 chr11 105985376 105985717 -44797836 + MARNA DNA Mariner 167 560 -26 327 272 37 0 chr11 105985983 105986064 -44797489 + MIR SINE MIR 98 181 -81 393 305 57 0 chr11 105986389 105986530 -44797023 - MIR SINE MIR -65 197 49 224 308 22 22 chr11 105987202 105987293 -44796260 + L2 LINE L2 3001 3091 -181 194 333 0 0 chr11 105987528 105987579 -44795974 + L2 LINE L2 3220 3270 -2 743 127 0 52 chr11 105988051 105988281 -44795272 + (CTG)n Simple_repeat Simple_repeat 1 218 0 636 241 148 5 chr11 105990274 105990477 -44793076 + MIR SINE MIR 17 248 -14 591 273 68 6 chr11 105990935 105991111 -44792442 - MIR SINE MIR -6 256 70 356 274 145 73 chr11 105991444 105991802 -44791751 + MLT1K LTR MaLR 201 584 -4 611 248 39 91 chr11 105992330 105992584 -44790969 - MIR SINE MIR -1 261 21 373 274 104 30 chr11 105992640 105992775 -44790778 + MIR3 SINE MIR 40 184 -24 460 237 76 6 chr11 105993559 105993772 -44789781 - ORSL DNA AcHobo -1 274 15 403 306 162 9 chr11 105993782 105994004 -44789549 - MIR SINE MIR -5 257 2 272 288 32 48 chr11 105995508 105995633 -44787920 + L2 LINE L2 3181 3303 -10 775 155 0 39 chr11 105995812 105995941 -44787612 - AluJo SINE Alu -178 134 11 2430 95 0 0 chr11 105996292 105996619 -44786934 - AluSx SINE Alu 0 327 1 1607 189 6 16 chr11 105996746 105997058 -44786495 - AluJb SINE Alu -3 309 1 260 315 176 18 chr11 105997504 105997669 -44785884 + MIR SINE MIR 20 210 -52 191 211 0 0 chr11 105997874 105997912 -44785641 - L2 LINE L2 -3 3310 3273 2405 90 0 0 chr11 105998007 105998318 -44785235 + AluY SINE Alu 1 311 0 398 273 81 120 chr11 105999846 106000253 -44783300 + L2 LINE L2 2854 3244 -69 246 276 56 41 chr11 106000253 106000449 -44783104 + L1ME4a LINE L1 5914 6112 -9 259 253 13 38 chr11 106000778 106000872 -44782681 + GA-rich Low_complexity Low_complexity 5 154 0 657 337 32 12 chr11 106003230 106003479 -44780074 + MIR SINE MIR 2 255 -7 4474 188 30 19 chr11 106003486 106004331 -44779222 + MER21B LTR ERV1 1 854 -9 760 230 60 25 chr11 106004474 106004674 -44778879 + MIR SINE MIR 56 262 0 254 257 110 99 chr11 106004677 106004763 -44778790 - MIR SINE MIR -62 146 94 1479 183 46 7 chr11 106004763 106005048 -44778505 + AluJo SINE Alu 1 296 -16 254 257 110 99 chr11 106005048 106005123 -44778430 - MIR SINE MIR -114 94 21 714 314 130 50 chr11 106005224 106006322 -44777231 - L2 LINE L2 -434 2880 1695 200 114 0 29 chr11 106008857 106008892 -44774661 + (GAAA)n Simple_repeat Simple_repeat 4 37 0 1608 148 154 30 chr11 106009533 106009865 -44773688 - THE1C LTR MaLR 0 375 3 1936 165 0 23 chr11 106010517 106010826 -44772727 + AluJb SINE Alu 2 303 -9 249 245 310 7 chr11 106012302 106012457 -44771096 + L2 LINE L2 2994 3195 -118 1395 194 16 44 chr11 106012645 106012960 -44770593 + AluJo SINE Alu 2 307 -5 1570 123 8 41 chr11 106014043 106014287 -44769266 - MER46A DNA MER2_type 0 236 1 184 200 36 0 chr11 106016250 106016305 -44767248 + CT-rich Low_complexity Low_complexity 2 58 0 394 299 68 87 chr11 106017465 106017980 -44765573 + L2 LINE L2 2743 3272 0 291 303 49 65 chr11 106017983 106018168 -44765385 - MIR SINE MIR -2 260 79 228 300 31 117 chr11 106018686 106018909 -44764644 + L3 LINE CR1 1359 1562 -15 281 330 34 17 chr11 106018990 106019108 -44764445 + MIR SINE MIR 20 139 -123 574 270 56 20 chr11 106019145 106019341 -44764212 + MIR SINE MIR 58 260 -2 252 0 0 0 chr11 106019916 106019944 -44763609 + (CA)n Simple_repeat Simple_repeat 1 28 0 720 287 63 13 chr11 106020105 106020342 -44763211 - MIR SINE MIR -12 250 2 775 286 4 17 chr11 106021141 106021379 -44762174 - L2 LINE L2 -1 3312 3078 450 276 31 39 chr11 106021356 106021613 -44761940 - L2 LINE L2 -341 2973 2719 * 219 191 21 21 chr11 106022889 106022936 -44760617 + MER5B DNA MER1_type 1 47 -131 360 0 0 0 chr11 106022940 106022980 -44760573 + (CA)n Simple_repeat Simple_repeat 1 40 0 198 103 0 0 chr11 106022980 106023009 -44760544 + (GA)n Simple_repeat Simple_repeat 1 29 0 2044 96 46 3 chr11 106025333 106025615 -44757938 - AluSc SINE Alu -15 294 1 615 262 74 20 chr11 106026293 106026495 -44757058 + MIR SINE MIR 11 223 -39 2363 86 3 0 chr11 106026543 106026834 -44756719 - AluSp SINE Alu -21 292 1 342 291 189 0 chr11 106027087 106027235 -44756318 - MER5A DNA MER1_type -4 185 10 389 195 24 0 chr11 106027470 106027552 -44756001 - MER5A DNA MER1_type -80 109 26 2194 84 3 16 chr11 106028247 106028555 -44754998 + AluY SINE Alu 1 304 -7 2326 109 0 3 chr11 106028660 106028972 -44754581 - AluSx SINE Alu -1 311 1 282 193 0 0 chr11 106029062 106029119 -44754434 + CT-rich Low_complexity Low_complexity 1 57 0 1614 155 3 46 chr11 106029120 106029423 -44754130 - AluJo SINE Alu -22 290 1 391 169 42 0 chr11 106029439 106029510 -44754043 - L1MC2 LINE L1 -18 6326 6253 1978 113 13 10 chr11 106029876 106030177 -44753376 + AluSg SINE Alu 1 302 -8 401 291 67 18 chr11 106030250 106030415 -44753138 + L2 LINE L2 2864 3036 -277 241 130 0 37 chr11 106030418 106030472 -44753081 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1793 124 81 34 chr11 106030472 106030770 -44752783 - AluSx SINE Alu 0 312 1 1839 224 17 44 chr11 106030822 106031189 -44752364 + L1ME3A LINE L1 5666 6016 -154 2360 102 0 0 chr11 106031189 106031494 -44752059 - AluSx SINE Alu -7 305 1 1839 224 17 44 chr11 106031494 106031645 -44751908 + L1ME3A LINE L1 6016 6170 0 353 206 227 41 chr11 106031658 106031852 -44751701 + L2 LINE L2 3083 3312 -1 363 136 0 0 chr11 106032750 106032809 -44750744 + (CA)n Simple_repeat Simple_repeat 1 59 0 1080 53 0 8 chr11 106033196 106033329 -44750224 + AluY SINE Alu 1 132 -179 234 0 0 0 chr11 106033329 106033355 -44750198 + (A)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr11 106033355 106033377 -44750176 + GC_rich Low_complexity Low_complexity 1 22 0 2550 54 0 0 chr11 106034000 106034297 -44749256 + AluY SINE Alu 1 297 -14 342 279 74 58 chr11 106034324 106034514 -44749039 - L2 LINE L2 -40 3273 3081 1751 190 103 3 chr11 106034651 106035009 -44748544 - MLT1D LTR MaLR 0 505 112 199 404 73 0 chr11 106035262 106035371 -44748182 - L2 LINE L2 -49 3223 3107 250 221 10 106 chr11 106035474 106035578 -44747975 + MIR SINE MIR 117 210 -52 209 189 0 0 chr11 106035619 106035656 -44747897 + (CAT)n Simple_repeat Simple_repeat 3 39 0 186 293 170 28 chr11 106037101 106037207 -44746346 - L2 LINE L2 -15 3257 3137 2099 130 0 13 chr11 106037271 106037571 -44745982 + AluSx SINE Alu 1 296 -16 376 253 23 0 chr11 106037766 106037853 -44745700 - L2 LINE L2 0 3272 3184 21 0 0 0 chr11 106038564 106038585 -44744968 + AT_rich Low_complexity Low_complexity 1 21 0 402 297 181 0 chr11 106038968 106039106 -44744447 - MER5A DNA MER1_type -1 188 26 2151 117 0 13 chr11 106039106 106039404 -44744149 + AluSx SINE Alu 1 294 -18 933 136 68 0 chr11 106040303 106040450 -44743103 - MER5A DNA MER1_type -32 157 1 476 223 0 150 chr11 106040471 106040595 -44742958 + MER5B DNA MER1_type 14 155 -23 216 0 0 0 chr11 106040595 106040619 -44742934 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1543 144 30 8 chr11 106040621 106040884 -44742669 - L1PA16 LINE L1 -9 6157 5889 476 223 0 150 chr11 106040884 106040949 -44742604 + MER5B DNA MER1_type 156 177 -1 207 367 41 55 chr11 106041684 106041902 -44741651 - L3 LINE CR1 -87 1490 1276 1082 202 36 56 chr11 106042196 106042533 -44741020 + L1M4 LINE L1 2403 2732 -3414 1013 231 16 25 chr11 106042521 106042724 -44740829 + L1MB7 LINE L1 5897 6099 -85 * 2226 120 0 0 chr11 106042724 106043016 -44740537 + AluSx SINE Alu 3 294 -18 1013 231 16 25 chr11 106043016 106043055 -44740498 + L1MB7 LINE L1 6099 6137 -47 465 162 50 20 chr11 106043258 106043357 -44740196 - L2 LINE L2 0 3313 3212 23 0 0 0 chr11 106044219 106044242 -44739311 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr11 106044562 106044617 -44738936 + AT_rich Low_complexity Low_complexity 1 55 0 2116 143 0 9 chr11 106044706 106045021 -44738532 + AluJb SINE Alu 1 312 0 183 240 60 40 chr11 106045144 106045195 -44738358 - MIR SINE MIR -100 108 56 * 332 289 24 77 chr11 106045192 106045400 -44738153 + L2 LINE L2 3112 3308 -5 588 266 41 50 chr11 106045951 106046008 -44737545 - MIR SINE MIR 0 262 206 2103 162 78 8 chr11 106046008 106046378 -44737175 + MSTD LTR MaLR 1 396 0 588 266 41 50 chr11 106046378 106046538 -44737015 - MIR SINE MIR -56 206 47 722 121 0 0 chr11 106046775 106046874 -44736679 + AluSg/x SINE Alu 199 297 -13 186 43 0 0 chr11 106047381 106047404 -44736149 + (CATA)n Simple_repeat Simple_repeat 2 24 0 2385 56 7 0 chr11 106050265 106050550 -44733003 + AluY SINE Alu 9 295 -16 462 65 0 0 chr11 106052499 106052561 -44730992 + (CA)n Simple_repeat Simple_repeat 2 63 0 2291 106 0 17 chr11 106052970 106053271 -44730282 + AluSg SINE Alu 1 296 -14 1446 119 60 8 chr11 106053305 106053557 -44729996 + AluSg SINE Alu 28 292 -18 185 70 0 105 chr11 106053604 106053661 -44729892 + (TTCTCC)n Simple_repeat Simple_repeat 3 53 0 474 267 111 108 chr11 106053999 106054415 -44729138 - L2 LINE L2 -4 3268 2852 588 253 146 0 chr11 106054686 106054844 -44728709 + MER5A DNA MER1_type 9 189 0 2398 146 57 0 chr11 106055272 106055677 -44727876 + MSTA LTR MaLR 1 428 0 1605 201 3 20 chr11 106055746 106056039 -44727514 + AluJo SINE Alu 1 288 -24 314 308 19 10 chr11 106057125 106057229 -44726324 + MIR SINE MIR 11 115 -147 679 196 0 0 chr11 106057243 106057386 -44726167 + MER96B DNA MER1_type? 244 386 -31 283 319 0 50 chr11 106057396 106057440 -44726113 + MIR SINE MIR 113 158 -104 2090 118 0 24 chr11 106057440 106057776 -44725777 + AluSg SINE Alu 1 310 0 283 319 0 50 chr11 106057776 106057872 -44725681 + MIR SINE MIR 158 246 -16 780 176 55 12 chr11 106057938 106058103 -44725450 - MER5A DNA MER1_type -6 183 12 184 325 35 86 chr11 106058476 106058673 -44724880 - L2 LINE L2 -56 3216 3030 204 40 0 0 chr11 106059390 106059415 -44724138 + (A)n Simple_repeat Simple_repeat 1 25 0 357 358 17 35 chr11 106064731 106064851 -44718702 - MIR SINE MIR -20 242 126 2188 124 0 0 chr11 106064851 106065150 -44718403 + AluSx SINE Alu 1 299 -13 357 358 17 35 chr11 106065150 106065261 -44718292 - MIR SINE MIR -136 126 15 520 184 144 63 chr11 106065675 106065849 -44717704 + MER5A DNA MER1_type 2 189 0 2323 73 3 7 chr11 106065854 106066154 -44717399 + AluY SINE Alu 1 299 -12 2281 104 3 3 chr11 106066416 106066714 -44716839 - AluSq SINE Alu -15 298 1 476 299 0 0 chr11 106066909 106067043 -44716510 - L2 LINE L2 0 3313 3180 483 255 90 35 chr11 106067687 106067942 -44715611 - LTR33 LTR ERVL 0 521 253 308 316 90 15 chr11 106068044 106068177 -44715376 - L2 LINE L2 -6 3266 3124 285 276 0 26 chr11 106068501 106068577 -44714976 - MIR SINE MIR -100 108 35 2397 76 0 3 chr11 106069186 106069476 -44714077 - AluSx SINE Alu -20 292 4 212 209 119 0 chr11 106069577 106069644 -44713909 - MIR SINE MIR -116 92 33 303 267 39 62 chr11 106070015 106070193 -44713360 + MIR SINE MIR 90 262 0 373 344 67 39 chr11 106072941 106073223 -44710330 + L2 LINE L2 2979 3268 -4 380 203 24 65 chr11 106073888 106074011 -44709542 + MER53 DNA DNA 9 126 -63 507 107 36 12 chr11 106074157 106074241 -44709312 + MER53 DNA DNA 93 178 -11 487 158 30 40 chr11 106074160 106074261 -44709292 - MER53 DNA DNA -88 101 2 * 2275 87 17 0 chr11 106075975 106076273 -44707280 + AluSp SINE Alu 1 303 -10 250 119 24 0 chr11 106076276 106076318 -44707235 - L2 LINE L2 -74 3239 3197 285 226 274 0 chr11 106077013 106077119 -44706434 - MIR3 SINE MIR -36 172 38 2043 123 6 46 chr11 106077392 106077717 -44705836 - AluSq SINE Alu -1 312 1 544 214 30 15 chr11 106077810 106077941 -44705612 - MIR3 SINE MIR -1 207 75 908 260 82 93 chr11 106078506 106078761 -44704792 - L1ME4a LINE L1 -11 6110 5854 866 225 11 21 chr11 106078761 106078948 -44704605 - MER5A DNA MER1_type -1 188 4 908 260 82 93 chr11 106078948 106079465 -44704088 - L1ME4a LINE L1 -267 5854 5347 576 124 0 0 chr11 106079614 106079719 -44703834 + (TC)n Simple_repeat Simple_repeat 2 106 0 318 26 0 0 chr11 106079719 106079758 -44703795 + (CA)n Simple_repeat Simple_repeat 1 39 0 311 335 46 29 chr11 106080437 106080718 -44702835 + L2 LINE L2 2140 2425 -889 274 246 158 26 chr11 106081269 106081383 -44702170 - L2 LINE L2 0 3313 3185 652 262 95 9 chr11 106081590 106081811 -44701742 + MIR SINE MIR 3 242 -20 377 296 118 6 chr11 106082000 106082169 -44701384 - MER5A DNA MER1_type 0 189 2 202 246 164 9 chr11 106082543 106082653 -44700900 + MIR3 SINE MIR 67 193 -15 2277 105 0 0 chr11 106083201 106083495 -44700058 - AluSc SINE Alu -15 294 1 2443 61 0 7 chr11 106084264 106084558 -44698995 - AluY SINE Alu -19 292 1 332 262 0 10 chr11 106085634 106085737 -44697816 + L2 LINE L2 3212 3313 0 180 242 199 62 chr11 106086882 106087043 -44696510 - L2 LINE L2 -924 2390 2208 2126 110 4 0 chr11 106087918 106088225 -44695328 - AluSx SINE Alu 0 308 1 1981 105 0 48 chr11 106089125 106089444 -44694109 - AluSx SINE Alu 0 305 1 269 345 41 0 chr11 106089593 106089738 -44693815 - MIR SINE MIR -65 197 47 201 284 0 40 chr11 106089871 106089945 -44693608 - MIR SINE MIR -12 250 180 307 359 39 0 chr11 106090451 106090554 -44692999 - L2 LINE L2 -23 3249 3143 333 0 0 0 chr11 106091459 106091496 -44692057 + (TG)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr11 106091559 106091584 -44691969 + AT_rich Low_complexity Low_complexity 1 25 0 1786 265 88 16 chr11 106093724 106094278 -44689275 + MLT1G1 LTR MaLR 1 594 -1 3301 48 6 71 chr11 106094280 106094759 -44688794 - LTR7 LTR ERV1 -2 448 1 267 232 0 0 chr11 106095830 106095886 -44687667 - L2 LINE L2 -7 3306 3251 504 271 103 5 chr11 106096064 106096267 -44687286 - MIR SINE MIR -6 256 34 2362 101 3 3 chr11 106096453 106096761 -44686792 - AluSx SINE Alu -4 308 1 282 193 0 0 chr11 106096851 106096908 -44686645 + CT-rich Low_complexity Low_complexity 1 57 0 1720 149 3 43 chr11 106096909 106097211 -44686342 - AluJo SINE Alu -22 290 1 384 155 42 0 chr11 106097227 106097298 -44686255 - L1MC2 LINE L1 -18 6326 6253 2213 97 4 0 chr11 106097662 106097968 -44685585 + AluSg SINE Alu 1 307 0 2241 88 3 16 chr11 106098074 106098382 -44685171 - AluY SINE Alu -7 304 1 362 195 24 0 chr11 106099076 106099158 -44684395 + MER5A DNA MER1_type 26 109 -80 296 291 189 0 chr11 106099393 106099541 -44684012 + MER5A DNA MER1_type 10 185 -4 2384 86 3 0 chr11 106099795 106100086 -44683467 + AluSp SINE Alu 1 292 -21 556 282 73 15 chr11 106100130 106100336 -44683217 - MIR SINE MIR -34 228 11 2102 93 46 0 chr11 106101014 106101294 -44682259 + AluSc SINE Alu 1 293 -16 427 289 112 30 chr11 106103697 106103894 -44679659 - MIR SINE MIR -31 231 19 1042 279 75 107 chr11 106103907 106104652 -44678901 + L3 LINE CR1 517 1237 -340 2307 94 0 7 chr11 106104670 106104978 -44678575 + AluSc SINE Alu 1 306 -3 1774 92 11 25 chr11 106104980 106105264 -44678289 + AluY SINE Alu 1 280 -31 768 256 85 18 chr11 106107137 106107360 -44676193 - MIR SINE MIR -10 252 15 270 0 0 0 chr11 106108121 106108151 -44675402 + (CA)n Simple_repeat Simple_repeat 2 31 0 396 0 0 0 chr11 106108376 106108420 -44675133 + (CA)n Simple_repeat Simple_repeat 2 45 0 688 197 0 36 chr11 106108508 106108645 -44674908 - FLAM_A SINE Alu -1 132 1 2269 67 0 7 chr11 106108853 106109159 -44674394 + AluY SINE Alu 10 313 0 214 273 109 67 chr11 106111159 106111324 -44672229 + L2 LINE L2 2261 2432 -882 188 274 74 32 chr11 106111716 106111811 -44671742 - MIR SINE MIR -4 258 160 477 172 0 50 chr11 106111901 106112000 -44671553 - MIR SINE MIR -118 144 51 6505 88 15 3 chr11 106112137 106113371 -44670182 + L1PA11 LINE L1 4924 6174 0 200 297 78 0 chr11 106113425 106113489 -44670064 + MIR SINE MIR 193 261 -1 1990 121 0 0 chr11 106115174 106115447 -44668106 + AluSq SINE Alu 40 312 -1 25 31 0 0 chr11 106115618 106115650 -44667903 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr11 106116490 106116514 -44667039 + AT_rich Low_complexity Low_complexity 1 24 0 242 215 92 15 chr11 106116813 106116878 -44666675 - MIR3 SINE MIR -1 207 138 198 0 0 0 chr11 106117871 106117893 -44665660 + (A)n Simple_repeat Simple_repeat 1 22 0 1873 115 49 25 chr11 106118439 106118725 -44664828 - AluSg SINE Alu -17 293 1 225 0 0 0 chr11 106119076 106119090 -44664463 + (C)n Simple_repeat Simple_repeat 1 39 0 225 0 0 0 chr11 106119090 106119115 -44664438 + (C)n Simple_repeat Simple_repeat 1 25 0 375 23 0 0 chr11 106119141 106119185 -44664368 + (A)n Simple_repeat Simple_repeat 1 44 0 1171 183 28 0 chr11 106119993 106120206 -44663347 + MER20 DNA MER1_type 1 219 0 264 59 0 0 chr11 106121633 106121667 -44661886 + (CA)n Simple_repeat Simple_repeat 2 35 0 2309 68 41 0 chr11 106122244 106122538 -44661015 - AluY SINE Alu -5 306 1 399 268 172 11 chr11 106123167 106123392 -44660161 - MIR SINE MIR 0 262 3 224 209 0 15 chr11 106123392 106123459 -44660094 + (TCCA)n Simple_repeat Simple_repeat 1 66 0 2402 84 0 0 chr11 106124303 106124600 -44658953 - AluSg SINE Alu -13 297 1 371 379 53 16 chr11 106124616 106124806 -44658747 - L2 LINE L2 -1 3271 3075 1201 199 31 83 chr11 106126122 106126508 -44657045 + L2 LINE L2 1118 1483 -1831 837 187 172 0 chr11 106126513 106126702 -44656851 + MER33 DNA MER1_type 10 165 -2420 2145 121 10 7 chr11 106126702 106127008 -44656545 - AluSx SINE Alu -4 308 2 837 187 172 0 chr11 106127008 106127086 -44656467 + MER33 DNA MER1_type 165 323 -1 992 254 110 12 chr11 106127132 106127451 -44656102 + L2 LINE L2 1545 1894 -1420 299 228 0 0 chr11 106127462 106127519 -44656034 - MER63 DNA MER1_type -27 1035 979 434 172 90 66 chr11 106127520 106127642 -44655911 - MER63 DNA MER1_type -311 751 1 2349 249 130 53 chr11 106127646 106128746 -44654807 + L2 LINE L2 1890 3063 -250 41 36 0 0 chr11 106128817 106128872 -44654681 + AT_rich Low_complexity Low_complexity 1 55 0 1724 91 40 0 chr11 106128872 106129146 -44654407 - L1MA5A LINE L1 -3 6294 6010 238 246 58 43 chr11 106129148 106129217 -44654336 + L2 LINE L2 3244 3313 0 2501 57 0 3 chr11 106130331 106130628 -44652925 - AluY SINE Alu -15 296 1 236 53 26 0 chr11 106130771 106130809 -44652744 + (CA)n Simple_repeat Simple_repeat 2 40 0 1992 75 71 4 chr11 106131075 106131342 -44652211 - AluSq SINE Alu -26 287 3 1174 157 25 8 chr11 106131346 106131581 -44651972 + L1MA4A LINE L1 6065 6303 0 2316 90 27 0 chr11 106133244 106133543 -44650010 + AluY SINE Alu 1 307 -4 758 266 59 8 chr11 106133636 106133990 -44649563 + L1ME4a LINE L1 5680 6051 -70 2237 97 3 3 chr11 106134431 106134742 -44648811 + AluY SINE Alu 1 311 0 197 313 18 71 chr11 106134887 106134999 -44648554 - MIR SINE MIR -73 189 84 404 281 165 0 chr11 106135029 106135193 -44648360 - MIR SINE MIR -25 237 47 211 237 153 0 chr11 106135765 106135824 -44647729 + L2 LINE L2 3241 3308 -5 1500 255 97 10 chr11 106136516 106137026 -44646527 - L2 LINE L2 -14 3299 2751 2769 86 16 5 chr11 106137026 106137397 -44646156 - THE1C LTR MaLR 0 375 1 486 105 0 12 chr11 106137397 106137483 -44646070 - THE1C-int LTR MaLR 0 1580 1496 1885 163 43 36 chr11 106137508 106138055 -44645498 - MLT2A2 LTR ERVL 0 554 1 1799 227 188 29 chr11 106138055 106138205 -44645348 - L2 LINE L2 -559 2755 2630 2196 113 0 3 chr11 106138205 106138498 -44645055 + AluSg SINE Alu 1 292 -18 1799 227 188 29 chr11 106138498 106139003 -44644550 - L2 LINE L2 -684 2630 1996 1817 172 3 7 chr11 106139003 106139299 -44644254 + AluSx SINE Alu 1 295 -17 262 331 154 22 chr11 106139534 106139670 -44643883 - L3 LINE CR1 -3 1574 1421 2639 115 0 0 chr11 106139870 106140234 -44643319 - THE1B LTR MaLR 0 364 1 1716 154 20 40 chr11 106140322 106140621 -44642932 - AluJo SINE Alu -19 293 1 219 36 0 0 chr11 106141339 106141367 -44642186 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2438 76 0 3 chr11 106142224 106142525 -44641028 - AluY SINE Alu -11 300 1 4251 118 62 43 chr11 106142587 106143357 -44640196 - LTR1 LTR ERV1 0 785 1 305 296 32 66 chr11 106144819 106145046 -44638507 - MIR3 SINE MIR -46 216 2 2176 77 0 7 chr11 106146075 106146349 -44637204 + AluY SINE Alu 28 299 -12 456 323 0 8 chr11 106146653 106146777 -44636776 - MER5A DNA MER1_type -1 188 66 214 248 28 92 chr11 106147022 106147131 -44636422 - MIR SINE MIR -84 178 77 2431 108 95 23 chr11 106147387 106147786 -44635767 - MSTC LTR MaLR 0 428 1 332 316 127 19 chr11 106151373 106151531 -44632022 - L2 LINE L2 0 3272 3098 196 233 0 0 chr11 106152106 106152149 -44631404 - L2 LINE L2 0 3313 3271 204 226 170 0 chr11 106152516 106152569 -44630984 + MIR SINE MIR 25 86 -176 2430 85 0 0 chr11 106152646 106152952 -44630601 + AluSq SINE Alu 1 306 -7 26 0 0 0 chr11 106153125 106153151 -44630402 + GC_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr11 106153162 106153188 -44630365 + (A)n Simple_repeat Simple_repeat 1 26 0 242 215 92 15 chr11 106154295 106154360 -44629193 + MIR3 SINE MIR 138 207 -1 24 0 0 0 chr11 106154659 106154683 -44628870 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr11 106155523 106155555 -44627998 + AT_rich Low_complexity Low_complexity 1 32 0 1971 124 0 0 chr11 106155726 106156000 -44627553 - AluSq SINE Alu 0 313 40 187 313 78 0 chr11 106157684 106157748 -44625805 - MIR SINE MIR -1 261 193 6533 86 25 11 chr11 106157802 106159036 -44624517 - L1PA11 LINE L1 0 6174 4924 477 172 0 50 chr11 106159173 106159272 -44624281 + MIR SINE MIR 51 144 -118 188 274 74 32 chr11 106159363 106159458 -44624095 + MIR SINE MIR 160 258 -4 214 283 102 66 chr11 106159850 106160016 -44623537 - L2 LINE L2 -882 2432 2261 2490 70 0 0 chr11 106162032 106162333 -44621220 - AluY SINE Alu -10 301 1 1159 205 9 4 chr11 106162402 106162631 -44620922 - AluJb SINE Alu 0 312 83 21 0 0 0 chr11 106164263 106164284 -44619269 + AT_rich Low_complexity Low_complexity 1 21 0 428 309 118 54 chr11 106165074 106165498 -44618055 + L2 LINE L2 2255 2705 -609 245 340 39 29 chr11 106165615 106165718 -44617835 + L2 LINE L2 2943 3046 -226 180 383 67 0 chr11 106165840 106165900 -44617653 + L2 LINE L2 3124 3187 -85 634 246 105 0 chr11 106166190 106166361 -44617192 + MER5A DNA MER1_type 1 189 0 1642 161 0 14 chr11 106166748 106167028 -44616525 - AluSq SINE Alu -37 276 1 639 274 44 18 chr11 106167962 106168206 -44615347 - MIR SINE MIR -13 249 2 768 256 85 18 chr11 106170301 106170524 -44613029 - MIR SINE MIR -10 252 15 270 0 0 0 chr11 106171285 106171315 -44612238 + (CA)n Simple_repeat Simple_repeat 2 31 0 238 265 122 84 chr11 106171478 106171542 -44612011 + MER112 DNA MER1_type 3 63 -197 396 0 0 0 chr11 106171542 106171586 -44611967 + (CA)n Simple_repeat Simple_repeat 2 45 0 238 265 122 84 chr11 106171586 106171672 -44611881 + MER112 DNA MER1_type 63 144 -116 743 187 8 22 chr11 106171672 106171806 -44611747 - FLAM_A SINE Alu -1 132 1 238 265 122 84 chr11 106171806 106171892 -44611661 + MER112 DNA MER1_type 144 249 -11 2162 113 10 3 chr11 106171969 106172286 -44611267 + AluSq SINE Alu 1 319 0 2188 117 0 23 chr11 106172899 106173207 -44610346 + AluSx SINE Alu 1 301 -11 506 234 106 32 chr11 106173260 106173542 -44610011 - L1MC5 LINE L1 -48 7913 7611 193 239 22 0 chr11 106174192 106174238 -44609315 - L2 LINE L2 -12 3260 3214 372 161 39 8 chr11 106174258 106174367 -44609186 + (TA)n Simple_repeat Simple_repeat 1 116 -18 2507 53 0 10 chr11 106174367 106174668 -44608885 + AluY SINE Alu 1 298 -13 372 161 39 8 chr11 106174668 106174688 -44608865 + (TA)n Simple_repeat Simple_repeat 116 134 0 308 250 90 20 chr11 106174742 106174842 -44608711 - MIR SINE MIR -122 140 34 409 348 111 36 chr11 106174959 106175020 -44608533 - L2 LINE L2 -2160 1154 1099 807 301 48 29 chr11 106175020 106175501 -44608052 + LTR16C LTR ERVL 2 491 0 409 348 111 36 chr11 106175501 106176275 -44607278 - L2 LINE L2 -2215 1099 256 566 281 182 0 chr11 106176454 106176657 -44606896 + MIR SINE MIR 18 257 -5 395 252 216 7 chr11 106176893 106177032 -44606521 - MER96 DNA MER1_type? -5 170 3 22 0 0 0 chr11 106177279 106177301 -44606252 + AT_rich Low_complexity Low_complexity 1 22 0 185 283 35 62 chr11 106177593 106177706 -44605847 - MIR SINE MIR -15 247 138 259 245 142 28 chr11 106177956 106178062 -44605491 + MLT1K LTR MaLR 7 124 -464 406 280 8 0 chr11 106178578 106178703 -44604850 - L1ME LINE L1 -451 5670 5545 22 0 0 0 chr11 106179158 106179180 -44604373 + AT_rich Low_complexity Low_complexity 1 22 0 2095 175 16 3 chr11 106180766 106181144 -44602409 + L1MC1 LINE L1 5949 6331 -2 202 154 26 0 chr11 106181664 106181703 -44601850 + (TA)n Simple_repeat Simple_repeat 1 40 0 318 239 210 36 chr11 106184356 106184494 -44599059 + L2 LINE L2 3152 3313 0 411 317 21 14 chr11 106185122 106185267 -44598286 - MIR SINE MIR -70 192 47 1691 196 0 16 chr11 106185306 106185612 -44597941 - AluJb SINE Alu -11 301 1 273 240 31 31 chr11 106186330 106186426 -44597127 + MIR SINE MIR 97 192 -70 629 264 137 18 chr11 106186570 106186797 -44596756 - MIR SINE MIR -3 259 6 2010 118 69 3 chr11 106187568 106187857 -44595696 + AluSg SINE Alu 1 308 -2 800 112 8 0 chr11 106188264 106188389 -44595164 - L1MB3 LINE L1 0 6183 6058 592 284 101 23 chr11 106188629 106188847 -44594706 - MIR SINE MIR 0 262 28 342 303 138 13 chr11 106188865 106189017 -44594536 + MER5A DNA MER1_type 19 189 0 265 244 17 92 chr11 106189297 106189416 -44594137 - L2 LINE L2 -1 3312 3203 325 342 0 9 chr11 106189424 106189538 -44594015 + MER5A DNA MER1_type 54 166 -23 181 299 15 15 chr11 106189996 106190063 -44593490 - L3b LINE CR1 -341 1242 1176 241 235 20 0 chr11 106190737 106190788 -44592765 + MER20 DNA MER1_type 5 56 -163 264 356 122 27 chr11 106191843 106192138 -44591415 - L2 LINE L2 -27 3286 2964 402 338 149 20 chr11 106192209 106192505 -44591048 - L2 LINE L2 -462 2852 2519 520 315 63 42 chr11 106193767 106194005 -44589548 - MIR SINE MIR -17 245 3 334 314 25 25 chr11 106194292 106194413 -44589140 + L2 LINE L2 3193 3313 0 1906 238 33 39 chr11 106194511 106195050 -44588503 + MLT1F LTR MaLR 1 536 -6 180 0 0 0 chr11 106197561 106197581 -44585972 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2231 67 20 7 chr11 106198025 106198322 -44585231 + AluY SINE Alu 1 301 -10 203 362 85 0 chr11 106198736 106198830 -44584723 + L2 LINE L2 3203 3304 -9 276 234 27 54 chr11 106199364 106199475 -44584078 - MER117 DNA MER1_type -39 158 51 721 290 65 4 chr11 106199769 106200000 -44583553 + MIR SINE MIR 15 259 -3 271 320 21 41 chr11 106200123 106200220 -44583333 - L2 LINE L2 -9 3263 3169 312 269 106 88 chr11 106201644 106201804 -44581749 + L2 LINE L2 3129 3291 -22 199 204 23 23 chr11 106201870 106201914 -44581639 - MIR3 SINE MIR -14 194 151 387 60 0 0 chr11 106201969 106202019 -44581534 + (TG)n Simple_repeat Simple_repeat 2 51 0 1592 90 132 26 chr11 106202125 106202374 -44581179 + AluSg1 SINE Alu 1 296 -13 214 39 0 0 chr11 106202374 106202400 -44581153 + (TAAA)n Simple_repeat Simple_repeat 2 88 0 1592 90 132 26 chr11 106202400 106202416 -44581137 + AluSg1 SINE Alu 296 309 0 733 251 25 93 chr11 106202446 106202812 -44580741 - L2 LINE L2 -2 3311 2971 214 319 69 26 chr11 106202810 106202926 -44580627 - MIR3 SINE MIR -52 156 36 * 1783 145 50 20 chr11 106203032 106203329 -44580224 - AluSx SINE Alu -6 306 1 1985 127 0 7 chr11 106203424 106203708 -44579845 + AluSx SINE Alu 1 282 -30 202 188 0 0 chr11 106203740 106203772 -44579781 + (TG)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr11 106203846 106203868 -44579685 + AT_rich Low_complexity Low_complexity 1 22 0 187 337 17 73 chr11 106205139 106205317 -44578236 - MIR3 SINE MIR -19 189 22 482 269 86 23 chr11 106205907 106206082 -44577471 - MIR SINE MIR -14 248 63 907 263 146 31 chr11 106206133 106206586 -44576967 - MLT1H LTR MaLR -25 524 20 1793 161 7 3 chr11 106206601 106206900 -44576653 + AluJb SINE Alu 1 300 -12 205 299 73 92 chr11 106207030 106207126 -44576427 + MIR3 SINE MIR 25 118 -90 2121 100 0 63 chr11 106207126 106207445 -44576108 + AluSx SINE Alu 1 299 -13 205 299 73 92 chr11 106207445 106207512 -44576041 + MIR3 SINE MIR 118 185 -23 651 233 129 67 chr11 106209912 106210152 -44573401 - MIR SINE MIR 0 262 8 332 328 74 0 chr11 106210207 106210329 -44573224 + L2 LINE L2 3142 3272 0 271 188 0 31 chr11 106211234 106211298 -44572255 + L3b LINE CR1 1212 1273 -310 282 349 250 10 chr11 106211618 106211810 -44571743 - MIR SINE MIR -12 250 13 240 300 144 19 chr11 106211780 106211940 -44571613 + MIR SINE MIR 77 256 -6 * 199 298 189 12 chr11 106213465 106213620 -44569933 - MIR3 SINE MIR -70 192 15 206 191 118 73 chr11 106214173 106214241 -44569312 - L2 LINE L2 -1 3312 3242 257 299 22 7 chr11 106217091 106217228 -44566325 + (TGG)n Simple_repeat Simple_repeat 2 140 0 242 125 21 0 chr11 106218782 106218830 -44564723 + GA-rich Low_complexity Low_complexity 1 49 0 359 376 84 5 chr11 106219736 106219949 -44563604 + MIR SINE MIR 15 244 -18 266 324 96 2 chr11 106220078 106220239 -44563314 + MIR SINE MIR 30 202 -60 319 268 106 35 chr11 106221793 106222047 -44561506 + L1MEd LINE L1 601 872 -5247 662 289 113 49 chr11 106222049 106222686 -44560867 + L1MEd LINE L1 2502 3179 -2950 243 152 0 0 chr11 106222843 106222889 -44560664 + GA-rich Low_complexity Low_complexity 1 46 0 771 158 23 23 chr11 106223686 106223819 -44559734 - FLAM_A SINE Alu 0 133 1 2195 127 0 0 chr11 106223920 106224219 -44559334 + AluSx SINE Alu 1 299 -13 15991 30 1 0 chr11 106224604 106227264 -44556289 - L1PA4 LINE L1 -10 6145 3481 2098 122 0 3 chr11 106227264 106227560 -44555993 - AluY SINE Alu -16 295 1 411 283 84 12 chr11 106228137 106228303 -44555250 - MIR SINE MIR -51 211 34 5326 124 13 0 chr11 106228304 106229167 -44554386 - L1PA11 LINE L1 -1173 4973 4100 6307 80 14 26 chr11 106229167 106230361 -44553192 + L1PA11 LINE L1 4987 6171 -3 1208 125 6 0 chr11 106230877 106231053 -44552500 + AluSc SINE Alu 130 306 -3 186 103 0 0 chr11 106231079 106231108 -44552445 + (ATG)n Simple_repeat Simple_repeat 2 30 0 1975 131 3 14 chr11 106231788 106232085 -44551468 + AluSx SINE Alu 1 294 -18 21 36 0 0 chr11 106233067 106233095 -44550458 + AT_rich Low_complexity Low_complexity 1 28 0 28 61 0 0 chr11 106233604 106233653 -44549900 + AT_rich Low_complexity Low_complexity 1 49 0 260 365 119 32 chr11 106233680 106233990 -44549563 - L2 LINE L2 -2 3270 2934 237 303 0 0 chr11 106234137 106234203 -44549350 - L2 LINE L2 -556 2758 2693 21 82 0 0 chr11 106234860 106234909 -44548644 + AT_rich Low_complexity Low_complexity 1 49 0 723 172 0 8 chr11 106234909 106235031 -44548522 - FLAM_A SINE Alu -12 121 1 609 269 20 30 chr11 106235091 106235292 -44548261 - MIR SINE MIR 0 262 64 455 350 57 6 chr11 106235729 106235906 -44547647 - MER5A DNA MER1_type 0 189 4 332 350 89 54 chr11 106237365 106237679 -44545874 - L2 LINE L2 -14 3258 2934 198 0 0 0 chr11 106237680 106237702 -44545851 + (A)n Simple_repeat Simple_repeat 1 22 0 186 272 104 58 chr11 106237810 106237983 -44545570 - L2 LINE L2 -14 3299 3119 316 360 82 14 chr11 106238104 106238251 -44545302 - L2 LINE L2 -212 3060 2904 182 320 39 62 chr11 106239174 106239302 -44544251 + L2 LINE L2 3189 3313 0 1990 146 0 3 chr11 106239458 106239753 -44543800 - AluSx SINE Alu -18 294 1 1162 204 154 19 chr11 106239756 106240237 -44543316 - MLT1F LTR MaLR -7 535 3 215 321 40 139 chr11 106240522 106240824 -44542729 - L2 LINE L2 -4 3268 2997 399 285 165 15 chr11 106241075 106241275 -44542278 - MIR SINE MIR -2 260 31 823 142 59 24 chr11 106241561 106241730 -44541823 + L1PA15 LINE L1 5986 6160 -5 1671 187 63 7 chr11 106241781 106242193 -44541360 - Zaphod DNA AcHobo -8 4023 3589 2461 198 93 18 chr11 106242200 106242922 -44540631 - Zaphod DNA AcHobo -3044 987 212 22 0 0 0 chr11 106243642 106243664 -44539889 + AT_rich Low_complexity Low_complexity 1 22 0 192 107 0 0 chr11 106244300 106244328 -44539225 + L2 LINE L2 3282 3309 -4 187 319 111 0 chr11 106244336 106244408 -44539145 - L2 LINE L2 0 3313 3234 1935 158 0 0 chr11 106245430 106245714 -44537839 + AluSg SINE Alu 1 284 -26 254 301 62 26 chr11 106245728 106245841 -44537712 - MIR SINE MIR -137 125 9 1122 120 5 21 chr11 106246424 106246615 -44536938 + MER53 DNA DNA 1 188 -1 221 341 78 93 chr11 106248305 106248715 -44534838 + L2 LINE L2 2836 3239 -33 455 288 71 25 chr11 106250879 106251077 -44532476 - MIR SINE MIR -45 217 11 186 167 0 0 chr11 106251250 106251286 -44532267 + (TA)n Simple_repeat Simple_repeat 1 36 0 498 302 41 12 chr11 106252159 106252328 -44531225 + MIR SINE MIR 21 194 -68 358 299 61 24 chr11 106252321 106252510 -44531043 - MIR3 SINE MIR -5 203 8 * 273 95 0 0 chr11 106252842 106252884 -44530669 + MADE1 DNA Mariner 1 42 -38 188 331 184 28 chr11 106252894 106253211 -44530342 + L2 LINE L2 2044 2310 -1004 333 0 0 0 chr11 106253211 106253248 -44530305 + (CA)n Simple_repeat Simple_repeat 2 38 0 188 331 184 28 chr11 106253248 106253473 -44530080 + L2 LINE L2 2310 2671 -643 201 326 34 97 chr11 106253721 106253988 -44529565 + L2 LINE L2 3020 3269 -3 21 0 0 0 chr11 106254595 106254616 -44528937 + AT_rich Low_complexity Low_complexity 1 21 0 501 289 76 35 chr11 106254618 106254815 -44528738 - MIR SINE MIR -10 252 48 2169 92 3 14 chr11 106254955 106255267 -44528286 + AluSx SINE Alu 5 313 0 332 43 22 0 chr11 106255743 106255789 -44527764 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 728 100 0 10 chr11 106255791 106255891 -44527662 - AluSx SINE Alu -30 282 184 912 117 0 0 chr11 106255891 106256011 -44527542 - AluSx SINE Alu -192 120 1 389 331 72 6 chr11 106256234 106256400 -44527153 - MER5A DNA MER1_type -7 182 6 1876 79 17 3 chr11 106256445 106256735 -44526818 - L1PBa LINE L1 -4889 1974 1681 2171 99 0 10 chr11 106258756 106259050 -44524503 - AluY SINE Alu -17 294 4 190 293 113 66 chr11 106259884 106259990 -44523563 + L2 LINE L2 3159 3269 -3 210 315 0 0 chr11 106260000 106260054 -44523499 - L2 LINE L2 -15 3257 3204 311 276 0 26 chr11 106260578 106260654 -44522899 + MIR SINE MIR 35 108 -100 353 316 90 15 chr11 106260978 106261111 -44522442 + L2 LINE L2 3124 3266 -6 476 268 47 24 chr11 106261256 106261469 -44522084 + LTR33 LTR ERVL 304 521 0 528 299 0 0 chr11 106262113 106262247 -44521306 + L2 LINE L2 3180 3313 0 2262 101 3 3 chr11 106262442 106262740 -44520813 + AluSq SINE Alu 1 298 -15 2282 76 0 54 chr11 106263001 106263317 -44520236 - AluY SINE Alu -12 299 1 2237 92 0 3 chr11 106263439 106263732 -44519821 - AluY SINE Alu -19 292 1 264 258 0 16 chr11 106264052 106264114 -44519439 + CT-rich Low_complexity Low_complexity 3 63 0 1122 238 92 60 chr11 106265865 106266147 -44517406 - MLT1J LTR MaLR 0 511 207 2318 98 0 7 chr11 106266147 106266454 -44517099 - AluSg1 SINE Alu -4 305 1 1122 238 92 60 chr11 106266454 106266641 -44516912 - MLT1J LTR MaLR -304 207 27 210 372 41 14 chr11 106266704 106266849 -44516704 + L3 LINE CR1 1021 1169 -408 490 303 103 67 chr11 106266860 106267190 -44516363 + L3 LINE CR1 1144 1485 -92 345 292 36 22 chr11 106267186 106267323 -44516230 + L2 LINE L2 2620 2758 -556 * 396 319 129 64 chr11 106267397 106267723 -44515830 + L2 LINE L2 2897 3243 -29 216 0 0 0 chr11 106270152 106270176 -44513377 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2244 110 0 7 chr11 106271984 106272284 -44511269 - AluSg SINE Alu -12 298 1 193 262 0 0 chr11 106272852 106272894 -44510659 - L3 LINE CR1 -2 1575 1534 223 342 58 17 chr11 106273331 106273451 -44510102 - L3 LINE CR1 -22 1555 1431 2395 35 3 3 chr11 106273584 106273866 -44509687 - AluY SINE Alu -13 298 17 193 292 15 62 chr11 106276556 106276621 -44506932 - L2 LINE L2 -12 3301 3240 471 264 40 40 chr11 106278522 106278670 -44504883 - MIR3 SINE MIR -31 177 30 1181 183 0 27 chr11 106278707 106278931 -44504622 - MER58A DNA MER1_type 0 224 7 264 204 0 0 chr11 106279500 106279554 -44503999 + GA-rich Low_complexity Low_complexity 1 54 0 2311 99 3 0 chr11 106279649 106279953 -44503600 - AluSp SINE Alu -8 305 1 217 206 44 0 chr11 106280254 106280322 -44503231 + CT-rich Low_complexity Low_complexity 3 73 0 1778 167 0 26 chr11 106280444 106280755 -44502798 + AluJo SINE Alu 1 303 -9 2421 57 0 10 chr11 106281384 106281684 -44501869 + AluY SINE Alu 1 297 -14 221 364 55 0 chr11 106282768 106282878 -44500675 - L2 LINE L2 -3 3310 3195 1502 177 4 4 chr11 106286076 106286336 -44497217 - AluJb SINE Alu -52 260 1 636 265 34 60 chr11 106286375 106286643 -44496910 - MIR SINE MIR 0 262 2 271 254 108 54 chr11 106286650 106286835 -44496718 - L2 LINE L2 0 3313 3119 316 360 82 14 chr11 106286956 106287103 -44496450 - L2 LINE L2 -212 3060 2904 229 330 83 9 chr11 106288026 106288135 -44495418 + L2 LINE L2 3189 3305 -8 2045 139 0 3 chr11 106288311 106288606 -44494947 - AluSx SINE Alu -18 294 1 1162 204 154 19 chr11 106288609 106289090 -44494463 - MLT1F LTR MaLR -7 535 3 215 321 40 139 chr11 106289375 106289677 -44493876 - L2 LINE L2 -4 3268 2997 396 276 171 15 chr11 106289928 106290127 -44493426 - MIR SINE MIR -2 260 31 823 142 59 24 chr11 106290412 106290581 -44492972 + L1PA15 LINE L1 5986 6160 -5 1671 187 63 7 chr11 106290632 106291044 -44492509 - Zaphod DNA AcHobo -8 4023 3589 2889 218 89 16 chr11 106291051 106291931 -44491622 - Zaphod DNA AcHobo -3044 987 44 189 0 0 0 chr11 106292441 106292462 -44491091 + (A)n Simple_repeat Simple_repeat 1 21 0 192 107 0 0 chr11 106293098 106293126 -44490427 + L2 LINE L2 3282 3309 -4 187 319 111 0 chr11 106293134 106293206 -44490347 - L2 LINE L2 0 3313 3234 1935 158 0 0 chr11 106294228 106294512 -44489041 + AluSg SINE Alu 1 284 -26 254 301 62 26 chr11 106294526 106294639 -44488914 - MIR SINE MIR -137 125 9 180 357 31 20 chr11 106294763 106294861 -44488692 - L2 LINE L2 -196 3076 2978 1122 120 5 21 chr11 106295222 106295413 -44488140 + MER53 DNA DNA 1 188 -1 221 341 78 93 chr11 106297103 106297513 -44486040 + L2 LINE L2 2836 3239 -33 455 288 71 25 chr11 106299676 106299874 -44483679 - MIR SINE MIR -45 217 11 186 167 0 0 chr11 106300047 106300083 -44483470 + (TA)n Simple_repeat Simple_repeat 1 36 0 516 316 42 6 chr11 106300955 106301123 -44482430 + MIR SINE MIR 21 194 -68 358 299 61 24 chr11 106301116 106301305 -44482248 - MIR3 SINE MIR -5 203 8 * 273 95 0 0 chr11 106301637 106301679 -44481874 + MADE1 DNA Mariner 1 42 -38 199 336 202 28 chr11 106301689 106302001 -44481552 + L2 LINE L2 2044 2300 -1014 441 0 0 0 chr11 106302001 106302050 -44481503 + (CA)n Simple_repeat Simple_repeat 1 49 0 199 336 202 28 chr11 106302050 106302272 -44481281 + L2 LINE L2 2300 2671 -643 201 326 34 97 chr11 106302520 106302787 -44480766 + L2 LINE L2 3020 3269 -3 21 0 0 0 chr11 106303394 106303415 -44480138 + AT_rich Low_complexity Low_complexity 1 21 0 494 289 76 35 chr11 106303417 106303614 -44479939 - MIR SINE MIR -10 252 48 2169 92 3 14 chr11 106303754 106304066 -44479487 + AluSx SINE Alu 5 313 0 353 22 22 0 chr11 106304541 106304587 -44478966 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 728 100 0 10 chr11 106304589 106304689 -44478864 - AluSx SINE Alu -30 280 182 912 117 0 0 chr11 106304689 106304809 -44478744 - AluSx SINE Alu -192 120 1 390 331 72 6 chr11 106305032 106305198 -44478355 - MER5A DNA MER1_type -7 182 6 1937 83 17 3 chr11 106305243 106305533 -44478020 - L1PBa LINE L1 -4889 1974 1681 2135 106 7 14 chr11 106307553 106307845 -44475708 - AluSg SINE Alu -17 293 4 189 293 113 66 chr11 106308676 106308782 -44474771 + L2 LINE L2 3159 3269 -3 208 315 0 0 chr11 106308792 106308846 -44474707 - L2 LINE L2 -15 3257 3204 307 276 0 26 chr11 106309370 106309446 -44474107 + MIR SINE MIR 35 108 -100 347 316 90 15 chr11 106309770 106309903 -44473650 + L2 LINE L2 3124 3266 -6 498 251 90 35 chr11 106310005 106310260 -44473293 + LTR33 LTR ERVL 253 521 0 364 300 0 43 chr11 106310906 106311046 -44472507 + L2 LINE L2 3180 3313 0 2258 101 3 3 chr11 106311244 106311542 -44472011 + AluSq SINE Alu 1 298 -15 2086 103 13 23 chr11 106311803 106312105 -44471448 - AluY SINE Alu -12 299 1 288 240 0 0 chr11 106313305 106313380 -44470173 + L1ME3A LINE L1 5892 5966 -204 2276 50 36 7 chr11 106314564 106314865 -44468688 - AluY SINE Alu -1 310 1 321 336 55 43 chr11 106315341 106315576 -44467977 - L1MC/D LINE L1 -2280 5528 5291 232 138 0 69 chr11 106316765 106316823 -44466730 + (TAAAAA)n Simple_repeat Simple_repeat 2 55 0 22 0 0 0 chr11 106316934 106316956 -44466597 + AT_rich Low_complexity Low_complexity 1 22 0 371 231 54 153 chr11 106317658 106317953 -44465600 + MLT1I LTR MaLR 140 405 -4 457 209 78 23 chr11 106318087 106318216 -44465337 + MIR SINE MIR 24 159 -103 584 167 19 0 chr11 106318221 106318329 -44465224 + FLAM_A SINE Alu 1 110 -32 198 268 0 56 chr11 106318341 106318412 -44465141 + MIR SINE MIR 148 214 -48 14113 125 28 35 chr11 106318441 106319428 -44464125 - Tigger1 DNA MER2_type 0 2418 1425 2155 112 7 7 chr11 106319428 106319732 -44463821 - AluSx SINE Alu -8 304 1 14113 125 28 35 chr11 106319732 106320197 -44463356 - Tigger1 DNA MER2_type -993 1425 958 2349 82 0 0 chr11 106320197 106320491 -44463062 + AluY SINE Alu 1 294 -17 14113 125 28 35 chr11 106320491 106321473 -44462080 - Tigger1 DNA MER2_type -1460 958 2 213 228 22 76 chr11 106322009 106322101 -44461452 - MIR3 SINE MIR -1 207 121 22 35 0 0 chr11 106322133 106322162 -44461391 + AT_rich Low_complexity Low_complexity 1 29 0 419 232 94 7 chr11 106322311 106322449 -44461104 - MER103 DNA DNA -16 150 1 21 89 0 0 chr11 106322889 106322945 -44460608 + AT_rich Low_complexity Low_complexity 1 56 0 2379 73 0 0 chr11 106323032 106323318 -44460235 + AluY SINE Alu 1 286 -25 24 32 0 0 chr11 106323684 106323715 -44459838 + AT_rich Low_complexity Low_complexity 1 31 0 1232 282 52 19 chr11 106323736 106324230 -44459323 + L2 LINE L2 2772 3283 -30 23 0 0 0 chr11 106324384 106324407 -44459146 + AT_rich Low_complexity Low_complexity 1 23 0 304 355 129 0 chr11 106327342 106327497 -44456056 - MER5B DNA MER1_type 0 178 4 288 320 157 0 chr11 106327850 106328003 -44455550 + MIR3 SINE MIR 18 194 -14 13519 184 17 6 chr11 106328174 106330528 -44453025 + L1MB7 LINE L1 4 2383 -4466 2756 105 31 37 chr11 106330528 106331178 -44452375 + MER41A LTR ERV1 1 554 0 10609 185 124 14 chr11 106331178 106331260 -44452293 + L1MB7 LINE L1 2380 2452 -4396 192 77 0 0 chr11 106331260 106331286 -44452267 + (CAA)n Simple_repeat Simple_repeat 2 27 0 10609 185 124 14 chr11 106331286 106334304 -44449249 + L1MB7 LINE L1 2452 5832 -1016 2294 84 7 3 chr11 106334306 106334605 -44448948 + AluSx SINE Alu 1 300 -12 190 308 100 85 chr11 106334800 106334930 -44448623 - L2 LINE L2 -8 3264 3133 809 205 95 5 chr11 106335484 106335684 -44447869 - MER20 DNA MER1_type -1 218 1 503 298 110 44 chr11 106335905 106336224 -44447329 - MLT1J2 LTR MaLR -37 413 74 438 267 19 75 chr11 106336360 106336521 -44447032 - MER5B DNA MER1_type -24 154 3 1095 177 82 18 chr11 106336651 106336967 -44446586 + MSTD LTR MaLR 13 396 0 928 231 82 16 chr11 106336967 106337301 -44446252 + MSTD-int LTR MaLR 1 471 -1264 6356 40 19 0 chr11 106337306 106338078 -44445475 - L1PA5 LINE L1 -7 6147 5361 5125 223 70 33 chr11 106338090 106339317 -44444236 + MSTD-int LTR MaLR 464 1735 0 821 232 140 60 chr11 106339319 106339655 -44443898 + MLT1A1 LTR MaLR 3 365 0 220 277 108 0 chr11 106340550 106340615 -44442938 + MIR SINE MIR 77 148 -114 5869 153 14 7 chr11 106340615 106342096 -44441457 + L1PA16 LINE L1 4672 6162 -4 4340 175 30 15 chr11 106342091 106342935 -44440618 + L1MB7 LINE L1 6020 6875 -11 * 28 29 0 0 chr11 106343624 106343659 -44439894 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr11 106345149 106345182 -44438371 + AT_rich Low_complexity Low_complexity 1 33 0 858 125 0 0 chr11 106346072 106346200 -44437353 - L1PA14 LINE L1 -44 6117 5990 23 54 0 0 chr11 106346340 106346377 -44437176 + AT_rich Low_complexity Low_complexity 1 37 0 677 266 90 30 chr11 106346939 106347172 -44436381 - MIR SINE MIR -15 247 1 296 313 52 44 chr11 106347202 106347385 -44436168 - MIR3 SINE MIR -12 196 8 236 302 50 33 chr11 106347759 106347847 -44435706 - L1M4 LINE L1 -1618 4528 4443 2319 96 0 0 chr11 106347847 106348149 -44435404 - AluSq SINE Alu -11 302 1 236 302 50 33 chr11 106348149 106348302 -44435251 - L1M4 LINE L1 -1703 4443 4283 189 0 0 0 chr11 106348779 106348800 -44434753 + (CA)n Simple_repeat Simple_repeat 2 22 0 27 0 0 0 chr11 106350683 106350710 -44432843 + AT_rich Low_complexity Low_complexity 1 27 0 276 230 80 30 chr11 106351014 106351114 -44432439 - L1ME1 LINE L1 -1 6165 6061 234 375 144 21 chr11 106351159 106351644 -44431909 - L2 LINE L2 -957 2357 1813 3477 143 82 2 chr11 106351905 106352540 -44431013 + L1MC2 LINE L1 5635 6320 -24 24 0 0 0 chr11 106353037 106353061 -44430492 + AT_rich Low_complexity Low_complexity 1 24 0 1247 208 58 4 chr11 106353162 106353422 -44430131 + Charlie1a DNA MER1_type 1 274 -1181 3305 168 56 18 chr11 106353523 106354251 -44429302 + Charlie1a DNA MER1_type 681 1436 -19 208 298 9 9 chr11 106354465 106354579 -44428974 + (CAT)n Simple_repeat Simple_repeat 3 116 0 22 35 0 0 chr11 106354723 106354752 -44428801 + AT_rich Low_complexity Low_complexity 1 29 0 902 286 93 54 chr11 106356984 106357488 -44426065 + MARNA DNA Mariner 14 537 -49 615 147 0 20 chr11 106357594 106357696 -44425857 - AluJo SINE Alu -18 294 195 592 127 154 9 chr11 106357704 106357814 -44425739 - AluJo SINE Alu -178 134 9 481 216 10 10 chr11 106358633 106358735 -44424818 - MIR SINE MIR -81 127 26 235 287 35 70 chr11 106360006 106360149 -44423404 - L2 LINE L2 -15 3298 3161 228 205 0 0 chr11 106360987 106361026 -44422527 + C-rich Low_complexity Low_complexity 6 44 0 309 301 61 73 chr11 106362225 106362798 -44420755 + Tigger4(Zombi) DNA MER2_type 943 1455 -1276 23 33 0 0 chr11 106364249 106364279 -44419274 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr11 106364460 106364495 -44419058 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr11 106364658 106364681 -44418872 + AT_rich Low_complexity Low_complexity 1 23 0 1980 88 30 88 chr11 106366656 106366984 -44416569 + AluY SINE Alu 2 310 -1 190 308 100 85 chr11 106367179 106367309 -44416244 - L2 LINE L2 -8 3264 3133 809 205 95 5 chr11 106367863 106368063 -44415490 - MER20 DNA MER1_type -1 218 1 503 298 110 44 chr11 106368284 106368603 -44414950 - MLT1J2 LTR MaLR -37 413 74 438 267 19 75 chr11 106368739 106368900 -44414653 - MER5B DNA MER1_type -24 154 3 1111 181 77 18 chr11 106369030 106369347 -44414206 + MSTD LTR MaLR 13 396 0 928 231 82 16 chr11 106369347 106369681 -44413872 + MSTD-int LTR MaLR 1 471 -1264 6356 40 19 0 chr11 106369686 106370458 -44413095 - L1PA5 LINE L1 -7 6147 5361 5125 223 70 33 chr11 106370470 106371697 -44411856 + MSTD-int LTR MaLR 464 1735 0 821 232 140 60 chr11 106371699 106372035 -44411518 + MLT1A1 LTR MaLR 3 365 0 220 277 108 0 chr11 106372930 106372995 -44410558 + MIR SINE MIR 77 148 -114 5899 153 14 6 chr11 106372995 106374475 -44409078 + L1PA16 LINE L1 4672 6162 -4 4340 175 30 15 chr11 106374470 106375314 -44408239 + L1MB7 LINE L1 5318 6173 -11 * 28 29 0 0 chr11 106376003 106376038 -44407515 + AT_rich Low_complexity Low_complexity 1 35 0 42768 32 21 4 chr11 106376767 106382812 -44400741 - L1PA2 LINE L1 0 6155 3 19406 151 77 29 chr11 106383833 106385857 -44397696 + L1MA3 LINE L1 12 1937 -5787 1142 39 0 0 chr11 106385857 106385985 -44397568 + AluY SINE Alu 66 193 -118 19406 151 77 29 chr11 106385985 106387498 -44396055 + L1MA3 LINE L1 1937 3376 -4348 1981 55 8 0 chr11 106387498 106387734 -44395819 + AluY SINE Alu 67 304 -7 19406 151 77 29 chr11 106387734 106388080 -44395473 + L1MA3 LINE L1 3376 3704 -4020 2415 66 0 10 chr11 106388080 106388384 -44395169 + AluY SINE Alu 1 301 -10 19406 151 77 29 chr11 106388384 106390033 -44393520 + L1MA3 LINE L1 3704 5272 -2452 2011 146 19 26 chr11 106390033 106390410 -44393143 + THE1C LTR MaLR 2 375 0 19406 151 77 29 chr11 106390410 106392088 -44391465 + L1MA3 LINE L1 5272 7724 0 225 0 0 0 chr11 106392091 106392116 -44391437 + (CA)n Simple_repeat Simple_repeat 2 26 0 273 311 14 0 chr11 106392473 106392547 -44391006 - L2 LINE L2 -7 3306 3232 288 314 209 0 chr11 106392642 106392833 -44390720 + L3 LINE CR1 1343 1573 -4 942 159 6 6 chr11 106392939 106393096 -44390457 - MER2 DNA MER2_type -180 165 9 185 278 0 0 chr11 106393107 106393143 -44390410 - L2 LINE L2 -33 3280 3245 2094 103 3 39 chr11 106394500 106394812 -44388741 + AluSq SINE Alu 1 301 -12 1563 195 29 11 chr11 106395190 106395538 -44388015 - L1MC2 LINE L1 0 6344 5991 4218 216 28 35 chr11 106395563 106395688 -44387865 - L1MC2 LINE L1 -859 5287 5163 1896 160 0 0 chr11 106395688 106395993 -44387560 - AluSx SINE Alu 0 306 2 4218 216 28 35 chr11 106395993 106397067 -44386486 - L1MC2 LINE L1 -983 5163 4096 249 33 0 0 chr11 106397800 106397830 -44385723 + (CA)n Simple_repeat Simple_repeat 2 31 0 2381 72 16 0 chr11 106398449 106398755 -44384798 - AluY SINE Alu 0 311 1 201 147 0 0 chr11 106398804 106398838 -44384715 + (T)n Simple_repeat Simple_repeat 1 34 0 2418 87 6 3 chr11 106398841 106399153 -44384400 - AluSq SINE Alu 0 313 1 752 294 156 52 chr11 106400077 106400918 -44382635 + L1ME LINE L1 4407 5334 -812 23 68 0 0 chr11 106401143 106401187 -44382366 + AT_rich Low_complexity Low_complexity 1 44 0 12110 141 12 17 chr11 106401287 106404347 -44379206 + L1PA13 LINE L1 3108 6143 -20 292 272 132 51 chr11 106404378 106404525 -44379028 + L1ME LINE L1 5602 5776 -345 713 151 8 24 chr11 106404525 106404651 -44378902 - L1PA16 LINE L1 -9 6157 6034 292 272 132 51 chr11 106404651 106404738 -44378815 + L1ME LINE L1 5776 5855 -266 5341 147 44 19 chr11 106405638 106406103 -44377450 - L1MA8 LINE L1 0 6291 5839 2272 149 67 15 chr11 106406103 106406506 -44377047 - MSTB LTR MaLR -2 424 1 5341 147 44 19 chr11 106406506 106407591 -44375962 - L1MA8 LINE L1 -452 5839 4703 351 0 0 0 chr11 106407615 106407654 -44375899 + (TG)n Simple_repeat Simple_repeat 2 40 0 195 42 0 0 chr11 106407727 106407751 -44375802 + (CAAAAA)n Simple_repeat Simple_repeat 6 29 0 207 0 0 0 chr11 106407883 106407906 -44375647 + (T)n Simple_repeat Simple_repeat 1 23 0 413 286 54 0 chr11 106408507 106408619 -44374934 - MER5B DNA MER1_type -60 118 1 2178 161 76 2 chr11 106409856 106410253 -44373300 - MSTA LTR MaLR 0 428 3 4708 162 18 2 chr11 106410271 106411094 -44372459 - MSTA-int LTR MaLR -20 1631 796 509 133 0 12 chr11 106411094 106411177 -44372376 - MSTB LTR MaLR -344 82 1 1901 153 0 3 chr11 106411735 106412017 -44371536 + AluSx SINE Alu 20 300 -12 754 297 72 49 chr11 106412280 106413192 -44370361 + L1MEd LINE L1 527 1490 -4820 538 250 19 12 chr11 106413286 106413446 -44370107 + L1ME LINE L1 329 489 -5581 242 280 34 34 chr11 106413558 106413676 -44369877 + L1ME LINE L1 496 613 -5457 251 152 0 45 chr11 106413690 106413756 -44369797 + L1MC4 LINE L1 7974 8036 -6 701 295 70 42 chr11 106413783 106414068 -44369485 - L2 LINE L2 -339 2975 2683 56 29 0 0 chr11 106416459 106416529 -44367024 + AT_rich Low_complexity Low_complexity 1 70 0 655 103 28 19 chr11 106416625 106416732 -44366821 + AluSg/x SINE Alu 181 288 -21 2343 217 45 33 chr11 106417059 106417663 -44365890 - MLT1E3 LTR MaLR 0 624 14 21 36 0 0 chr11 106417708 106417736 -44365817 + AT_rich Low_complexity Low_complexity 1 28 0 212 59 29 0 chr11 106417784 106417818 -44365735 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2064 121 0 0 chr11 106417826 106418099 -44365454 - AluSx SINE Alu -39 273 1 185 329 178 0 chr11 106419116 106419189 -44364364 + MIR SINE MIR 57 142 -120 1479 280 89 25 chr11 106419343 106419999 -44363554 + L2 LINE L2 2520 3219 -94 327 362 80 5 chr11 106420486 106420685 -44362868 + MIR SINE MIR 49 262 0 1484 205 8 72 chr11 106420732 106420907 -44362646 + MLT1A2 LTR MaLR 1 186 -188 1822 170 0 0 chr11 106420907 106421190 -44362363 + AluJb SINE Alu 4 286 -26 1484 205 8 72 chr11 106421190 106421414 -44362139 + MLT1A2 LTR MaLR 186 374 0 347 306 21 141 chr11 106422560 106422943 -44360610 - L2 LINE L2 -40 3232 2896 244 254 56 0 chr11 106423406 106423477 -44360076 + MER110 LTR ERV1 1 75 -416 1491 217 55 11 chr11 106423557 106423728 -44359825 + MER110 LTR ERV1 79 241 -250 248 26 0 53 chr11 106423728 106423766 -44359787 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 1491 217 55 11 chr11 106423766 106423976 -44359577 + MER110 LTR ERV1 241 477 -14 1700 132 16 85 chr11 106424039 106424402 -44359151 + MER44D DNA MER2_type 2 609 0 474 343 76 45 chr11 106424695 106425225 -44358328 + L2 LINE L2 2731 3272 0 2349 128 0 37 chr11 106425351 106425727 -44357826 - THE1B LTR MaLR -2 362 1 2471 126 25 28 chr11 106425855 106426290 -44357263 - L1PA16 LINE L1 -10 6156 5723 2185 131 66 24 chr11 106427001 106427247 -44356306 + MSTA LTR MaLR 1 272 -156 3452 130 35 31 chr11 106427247 106427855 -44355698 + MER4B LTR ERV1 1 610 0 2185 131 66 24 chr11 106427855 106428019 -44355534 + MSTA LTR MaLR 272 428 0 2714 162 39 25 chr11 106428019 106428582 -44354971 + MSTA-int LTR MaLR 1 571 -1080 1301 158 24 8 chr11 106428581 106428828 -44354725 + MSTA-int LTR MaLR 1401 1651 0 * 2198 139 71 24 chr11 106428828 106429237 -44354316 + MSTA LTR MaLR 1 428 0 293 263 26 18 chr11 106429859 106429973 -44353580 + MLT1J2 LTR MaLR 25 139 -311 548 225 69 76 chr11 106431574 106431850 -44351703 + MLT1I LTR MaLR 136 409 0 180 278 0 56 chr11 106431897 106431951 -44351602 - L2 LINE L2 -78 3194 3144 209 336 34 25 chr11 106432778 106432897 -44350656 + MIR SINE MIR 11 130 -132 258 250 125 18 chr11 106433388 106433500 -44350053 + MLT1K LTR MaLR 455 578 -10 1917 190 46 0 chr11 106433696 106434069 -44349484 - MLT1B LTR MaLR 0 390 1 393 117 0 0 chr11 106434761 106434821 -44348732 + (A)n Simple_repeat Simple_repeat 1 60 0 2376 76 0 7 chr11 106435256 106435558 -44347995 - AluSq SINE Alu -13 300 1 27 49 0 0 chr11 106435773 106435814 -44347739 + AT_rich Low_complexity Low_complexity 1 41 0 385 226 50 104 chr11 106436702 106437006 -44346547 + MLT1I LTR MaLR 115 549 0 198 0 0 0 chr11 106438319 106438341 -44345212 + (T)n Simple_repeat Simple_repeat 1 22 0 25 31 0 0 chr11 106438662 106438694 -44344859 + AT_rich Low_complexity Low_complexity 1 32 0 1954 121 6 69 chr11 106439665 106439997 -44343556 - AluSx SINE Alu -1 311 1 237 426 98 14 chr11 106440349 106440626 -44342927 + L2 LINE L2 2953 3252 -20 240 220 0 17 chr11 106441340 106441399 -44342154 + GA-rich Low_complexity Low_complexity 2 59 0 353 330 31 66 chr11 106441586 106441854 -44341699 - MIR SINE MIR 0 262 6 304 355 129 0 chr11 106442363 106442518 -44341035 - MER5B DNA MER1_type 0 178 4 293 320 157 0 chr11 106442871 106443024 -44340529 + MIR3 SINE MIR 18 194 -14 12740 184 17 6 chr11 106443195 106445551 -44338002 + L1MA4A LINE L1 4 2383 -4466 2689 106 29 35 chr11 106445551 106446201 -44337352 + MER41A LTR ERV1 1 554 0 10744 180 98 17 chr11 106446201 106446283 -44337270 + L1MA4A LINE L1 2380 2454 -4551 192 77 0 0 chr11 106446283 106446309 -44337244 + (CAA)n Simple_repeat Simple_repeat 2 27 0 10744 180 98 17 chr11 106446309 106449329 -44334224 + L1MA4A LINE L1 2454 5935 -1070 2378 90 0 0 chr11 106449329 106449628 -44333925 + AluSx SINE Alu 1 299 -13 10744 180 98 17 chr11 106449628 106450792 -44332761 + L1MA4A LINE L1 5935 7003 -2 370 327 82 0 chr11 106450892 106451051 -44332502 - MIR3 SINE MIR -4 204 33 21 36 0 0 chr11 106451698 106451726 -44331827 + AT_rich Low_complexity Low_complexity 1 28 0 1058 196 4 31 chr11 106451933 106452158 -44331395 + MER20 DNA MER1_type 1 219 0 372 317 14 14 chr11 106453515 106453657 -44329896 + MIR SINE MIR 5 146 -116 342 333 123 31 chr11 106453658 106453813 -44329740 + MIR SINE MIR 2 187 -75 2077 101 0 0 chr11 106453813 106454109 -44329444 - AluY SINE Alu 0 300 5 342 333 123 31 chr11 106454109 106454180 -44329373 + MIR SINE MIR 187 250 -12 197 170 170 0 chr11 106454517 106454570 -44328983 - L3b LINE CR1 -415 1168 1107 325 333 57 60 chr11 106454633 106455002 -44328551 - L3 LINE CR1 -574 1003 636 2520 215 31 7 chr11 106455411 106455956 -44327597 + MER74A LTR ERVL 1 558 0 278 352 47 8 chr11 106456766 106456894 -44326659 + L2 LINE L2 3173 3305 -8 21 0 0 0 chr11 106457078 106457099 -44326454 + AT_rich Low_complexity Low_complexity 1 21 0 534 294 49 57 chr11 106457286 106457680 -44325873 - MLT1L LTR MaLR -18 597 205 1991 120 58 3 chr11 106457680 106457972 -44325581 + AluSg SINE Alu 1 308 -2 29656 100 32 53 chr11 106457982 106464259 -44319294 + L1PA6 LINE L1 8 6467 -2 333 47 0 0 chr11 106464342 106464385 -44319168 + (CA)n Simple_repeat Simple_repeat 2 44 0 948 332 12 15 chr11 106465573 106465983 -44317570 - MLT1I LTR MaLR 0 409 1 267 173 0 0 chr11 106466621 106466673 -44316880 + CT-rich Low_complexity Low_complexity 1 52 0 780 240 29 25 chr11 106467260 106467464 -44316089 + MER63A DNA MER1_type 6 210 0 1236 281 5 33 chr11 106467618 106468038 -44315515 - MLT1I LTR MaLR -1 408 1 2122 110 3 3 chr11 106468201 106468491 -44315062 - AluSx SINE Alu -22 290 1 328 339 23 6 chr11 106468629 106468800 -44314753 + L1ME4a LINE L1 5946 6119 -2 35 24 0 0 chr11 106468804 106468846 -44314707 + AT_rich Low_complexity Low_complexity 1 42 0 242 235 114 53 chr11 106468874 106469006 -44314547 + L1ME4a LINE L1 5968 6107 -14 309 109 0 0 chr11 106469169 106469215 -44314338 + (TA)n Simple_repeat Simple_repeat 2 47 0 2483 116 28 5 chr11 106469220 106469617 -44313936 - MSTA LTR MaLR 0 428 23 616 296 76 38 chr11 106469669 106469933 -44313620 + L2 LINE L2 3009 3282 -31 2827 111 50 5 chr11 106469933 106470373 -44313180 + LTR46 LTR ERV1 1 460 0 3190 135 7 4 chr11 106470373 106470913 -44312640 + LTR46-int LTR ERV1 1 542 -6443 2803 7 0 0 chr11 106471121 106471426 -44312127 + AluY SINE Alu 1 305 -6 37716 126 14 9 chr11 106471506 106477723 -44305830 + LTR46-int LTR ERV1 658 6675 -310 1832 136 16 3 chr11 106477815 106478123 -44305430 + LTR46-int LTR ERV1 6674 6985 0 2133 136 24 118 chr11 106478123 106478631 -44304922 + LTR46 LTR ERV1 1 460 0 185 194 0 0 chr11 106478631 106478667 -44304886 + L2 LINE L2 3278 3313 0 2500 64 0 6 chr11 106478715 106479027 -44304526 + AluY SINE Alu 1 310 -1 581 286 90 48 chr11 106480182 106480472 -44303081 + L2 LINE L2 3012 3313 0 403 262 122 49 chr11 106482718 106482882 -44300671 + MIR SINE MIR 29 204 -58 226 178 55 41 chr11 106482892 106482965 -44300588 + MER103 DNA DNA 93 166 0 23 0 0 0 chr11 106483105 106483128 -44300425 + AT_rich Low_complexity Low_complexity 1 23 0 611 286 60 86 chr11 106483173 106483975 -44299578 - L1MC4 LINE L1 -151 7891 7111 282 277 108 15 chr11 106484658 106484788 -44298765 - LTR33 LTR ERVL -226 295 154 256 359 58 0 chr11 106484788 106484891 -44298662 + L2 LINE L2 3193 3301 -12 4579 14 0 0 chr11 106484988 106485504 -44298049 + L1PA2 LINE L1 5627 6142 -13 231 345 159 35 chr11 106485908 106486134 -44297419 + MIR SINE MIR 3 256 -6 41 36 0 0 chr11 106486171 106486226 -44297327 + AT_rich Low_complexity Low_complexity 1 55 0 445 202 93 17 chr11 106486670 106487303 -44296250 - L1MC2 LINE L1 -1 7766 6119 6192 160 16 8 chr11 106487315 106490362 -44293191 - L1PA13 LINE L1 0 6814 3644 1834 111 61 0 chr11 106490362 106490624 -44292929 - AluSc SINE Alu -6 303 26 6192 160 16 8 chr11 106490624 106492176 -44291377 - L1PA13 LINE L1 -3170 3644 2107 4475 250 94 3 chr11 106492175 106493325 -44290228 - L1PA13 LINE L1 -5532 1255 2 * 288 0 0 0 chr11 106494037 106494069 -44289484 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 432 104 0 0 chr11 106494068 106494135 -44289418 + (TA)n Simple_repeat Simple_repeat 2 68 0 1820 272 65 26 chr11 106495297 106495988 -44287565 + MER69 DNA AcHobo 84 801 -1725 1425 212 96 9 chr11 106496020 106496478 -44287075 + MER69 DNA AcHobo 2017 2514 -12 1739 229 97 12 chr11 106496522 106497029 -44286524 - L1ME1 LINE L1 -5 6161 5612 227 212 212 68 chr11 106497597 106497715 -44285838 + L2 LINE L2 3137 3271 -1 447 134 16 110 chr11 106498759 106498886 -44284667 + L1MA9 LINE L1 6160 6274 -38 18010 186 17 11 chr11 106498913 106500904 -44282649 + L1PA13 LINE L1 1086 3063 -3751 2148 121 0 3 chr11 106500904 106501193 -44282360 + AluSx SINE Alu 1 288 -24 18010 186 17 11 chr11 106501193 106504872 -44278681 + L1PA13 LINE L1 3063 6813 -1 1271 165 11 154 chr11 106504891 106505242 -44278311 + AluJo SINE Alu 2 302 0 191 298 50 66 chr11 106505374 106505495 -44278058 - L2 LINE L2 0 3272 3154 225 351 84 0 chr11 106505543 106505674 -44277879 - MARNA DNA Mariner -396 190 49 197 331 139 20 chr11 106506109 106506260 -44277293 - L2 LINE L2 -1 3312 3144 290 354 89 21 chr11 106506267 106506504 -44277049 + MIR SINE MIR 9 261 -1 399 231 30 30 chr11 106506986 106507120 -44276433 + LTR33A LTR ERVL 1 134 -389 390 261 76 92 chr11 106507189 106507557 -44275996 + LTR33A LTR ERVL 162 523 0 185 295 82 0 chr11 106507883 106507944 -44275609 + MIR SINE MIR 82 147 -61 216 259 49 37 chr11 106507955 106508036 -44275517 + L2 LINE L2 3186 3267 -5 1561 162 15 12 chr11 106709417 106709676 -44073877 - AluJb SINE Alu -26 286 27 966 217 45 149 chr11 106709696 106710448 -44073105 - L1MDb LINE L1 -4988 1579 906 6741 158 48 3 chr11 106710574 106711784 -44071769 + MST-int LTR MaLR 266 1529 -122 445 275 18 24 chr11 106712124 106712291 -44071262 - L1MDb LINE L1 -5469 576 411 858 153 19 13 chr11 106712294 106712451 -44071102 - MER2 DNA MER2_type -1 344 187 40215 38 22 1 chr11 106712455 106718449 -44065104 + L1PA2 LINE L1 1 6121 -34 1042 155 33 33 chr11 106718449 106718662 -44064891 - MER2 DNA MER2_type -131 214 2 22 0 0 0 chr11 106719057 106719079 -44064474 + AT_rich Low_complexity Low_complexity 1 22 0 696 323 67 15 chr11 106719482 106719956 -44063597 - L2 LINE L2 -147 3166 2670 4132 180 53 19 chr11 106719968 106721044 -44062509 + L1MA7 LINE L1 2676 3713 -2578 2169 114 3 0 chr11 106721044 106721343 -44062210 + AluY SINE Alu 1 300 -11 4132 180 53 19 chr11 106721343 106722337 -44061216 + L1MA7 LINE L1 3713 4671 -1620 2495 124 51 7 chr11 106722337 106722747 -44060806 - MSTA LTR MaLR 0 428 1 4132 180 53 19 chr11 106722747 106723178 -44060375 + L1MA7 LINE L1 4671 5086 -1205 4132 156 39 16 chr11 106723178 106724025 -44059528 + L1MA7 LINE L1 5422 6287 -4 4132 180 53 19 chr11 106724025 106724048 -44059505 + L1MA7 LINE L1 5086 6287 -4 21 36 0 0 chr11 106724064 106724092 -44059461 + AT_rich Low_complexity Low_complexity 1 28 0 201 39 0 0 chr11 106724213 106724239 -44059314 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3207 299 109 21 chr11 106724472 106724867 -44058686 - L2 LINE L2 -798 2516 2157 765 240 48 14 chr11 106724867 106725075 -44058478 + MER58C DNA MER1_type 1 215 0 3207 299 109 21 chr11 106725075 106726086 -44057467 - L2 LINE L2 -1157 2157 986 311 286 61 66 chr11 106728190 106728386 -44055167 - MIR SINE MIR -10 252 58 34 24 0 0 chr11 106728414 106728455 -44055098 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr11 106728977 106729005 -44054548 + AT_rich Low_complexity Low_complexity 1 28 0 1057 215 142 19 chr11 106729145 106729470 -44054083 - MLT1A1 LTR MaLR 0 365 1 206 365 28 19 chr11 106729669 106729776 -44053777 - MIR3 SINE MIR -48 160 53 685 330 152 65 chr11 106730242 106731357 -44052196 - L2 LINE L2 -382 2932 1721 7848 133 18 17 chr11 106731403 106732701 -44050852 + HSMAR2 DNA Mariner 3 1301 -1 1266 276 120 13 chr11 106733479 106734170 -44049383 - L1ME3A LINE L1 -30 6140 5376 5485 221 45 92 chr11 106734252 106738396 -44045157 + L1PA12 LINE L1 888 5605 -1979 1258 121 6 0 chr11 106738397 106738563 -44044990 + AluY SINE Alu 1 167 -144 5971 75 7 13 chr11 106738563 106739416 -44044137 + L1PA11 LINE L1 5315 6162 -12 681 253 169 0 chr11 106739429 106739749 -44043804 + Charlie7 DNA MER1_type 309 682 -1930 1432 114 46 5 chr11 106742298 106742517 -44041036 + MER30 DNA MER1_type 2 229 -1 357 361 16 0 chr11 106742901 106743023 -44040530 - L2 LINE L2 0 3313 3190 4364 153 30 13 chr11 106743025 106743797 -44039756 - LTR1 LTR ERV1 0 785 1 24 0 0 0 chr11 106744082 106744106 -44039447 + AT_rich Low_complexity Low_complexity 1 24 0 2440 37 0 17 chr11 106746191 106746485 -44037068 + AluY SINE Alu 1 289 -22 1993 127 0 7 chr11 106746585 106746868 -44036685 - AluSx SINE Alu -31 281 1 335 254 41 25 chr11 106747016 106747138 -44036415 + MIR SINE MIR 55 178 -84 961 233 31 73 chr11 106748470 106748596 -44034957 + MLT1H LTR MaLR 1 131 -418 2289 86 4 0 chr11 106748596 106748930 -44034623 - AluSc SINE Alu 0 335 1 961 233 31 73 chr11 106748930 106749118 -44034435 + MLT1H LTR MaLR 131 304 -245 250 226 72 82 chr11 106749373 106749581 -44033972 + L1ME LINE L1 5662 5867 -303 826 294 23 48 chr11 106749761 106750070 -44033483 + L1PA16 LINE L1 788 1088 -6486 328 316 0 15 chr11 106750073 106750206 -44033347 + L1PA16 LINE L1 2168 2298 -5276 11632 224 29 22 chr11 106750982 106755482 -44028071 + L1PA16 LINE L1 2258 6800 -804 2020 150 7 0 chr11 106755482 106755789 -44027764 + AluSx SINE Alu 1 309 -3 11632 224 29 22 chr11 106755789 106756598 -44026955 + L1PA16 LINE L1 6800 7602 -2 342 347 0 21 chr11 106757140 106757235 -44026318 + L2 LINE L2 3137 3229 -43 307 182 42 67 chr11 106757325 106757490 -44026063 + (TTATA)n Simple_repeat Simple_repeat 4 164 0 277 164 35 70 chr11 106757561 106757769 -44025784 + (TATAA)n Simple_repeat Simple_repeat 1 200 0 21 0 0 0 chr11 106758296 106758317 -44025236 + AT_rich Low_complexity Low_complexity 1 21 0 291 370 76 0 chr11 106758780 106758899 -44024654 - L3 LINE CR1 -75 1502 1375 334 304 72 27 chr11 106759073 106759329 -44024224 - L1MC/D LINE L1 -519 5645 5373 6621 79 3 3 chr11 106759763 106760911 -44022642 - L1PA6 LINE L1 0 6154 5014 7622 116 18 0 chr11 106760912 106762038 -44021515 + L1P3 LINE L1 524 1669 -4792 475 50 0 0 chr11 106762039 106762099 -44021454 + L1P LINE L1 5042 5101 -1045 7342 37 0 1 chr11 106762099 106763495 -44020058 + L1PA4 LINE L1 4780 6178 0 23129 81 2 2 chr11 106763495 106766670 -44016883 + L1P3 LINE L1 2165 5341 -1120 372 308 115 28 chr11 106766712 106766965 -44016588 - L1MC/D LINE L1 -1299 4847 4573 15276 136 32 30 chr11 106767168 106767227 -44016326 - Tigger2 DNA MER2_type -1 2717 2660 1796 156 0 14 chr11 106767227 106767522 -44016031 - AluSx SINE Alu -10 302 12 15276 136 32 30 chr11 106767522 106770173 -44013380 - Tigger2 DNA MER2_type -58 2660 1 29 70 0 0 chr11 106770195 106770252 -44013301 + AT_rich Low_complexity Low_complexity 1 57 0 334 199 0 128 chr11 106770254 106770395 -44013158 + L1MA9 LINE L1 6190 6312 0 331 277 0 12 chr11 106771234 106771317 -44012236 + MIR SINE MIR 3 84 -178 389 203 61 27 chr11 106771321 106771469 -44012084 + MER104 DNA Tc2 3 155 -25 242 205 39 51 chr11 106771568 106771646 -44011907 + MIR SINE MIR 183 259 -3 1854 144 10 19 chr11 106771860 106772172 -44011381 - AluSq SINE Alu -2 311 3 354 117 17 32 chr11 106772493 106772725 -44010828 + AluJo SINE Alu 17 288 -14 1953 124 48 34 chr11 106774070 106774406 -44009147 + THE1B LTR MaLR 6 349 -15 387 0 0 0 chr11 106774406 106774449 -44009104 + (CATA)n Simple_repeat Simple_repeat 1 43 0 1953 124 48 34 chr11 106774449 106774466 -44009087 + THE1B LTR MaLR 349 364 0 1145 106 22 22 chr11 106776188 106776367 -44007186 + AluSc SINE Alu 127 305 -4 23 33 0 0 chr11 106776491 106776521 -44007032 + AT_rich Low_complexity Low_complexity 1 30 0 448 323 58 66 chr11 106777308 106777400 -44006153 + MIR SINE MIR 2 93 -169 1820 160 49 32 chr11 106777400 106777769 -44005784 - THE1C LTR MaLR 0 375 1 448 323 58 66 chr11 106777769 106777933 -44005620 + MIR SINE MIR 93 256 -6 632 240 56 58 chr11 106778729 106779071 -44004482 + HAL1 LINE L1 2062 2402 -105 229 197 26 13 chr11 106779242 106779318 -44004235 + GA-rich Low_complexity Low_complexity 1 77 0 22 56 0 0 chr11 106779357 106779393 -44004160 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr11 106780976 106781006 -44002547 + AT_rich Low_complexity Low_complexity 1 30 0 395 316 87 9 chr11 106781472 106781690 -44001863 + MIR SINE MIR 4 238 -24 2082 143 21 160 chr11 106781856 106782387 -44001166 + LTR32 LTR ERVL 15 471 0 25 31 0 0 chr11 106782904 106782936 -44000617 + AT_rich Low_complexity Low_complexity 1 32 0 284 335 45 26 chr11 106783513 106783668 -43999885 - MIR SINE MIR -6 256 99 219 258 62 41 chr11 106784139 106784236 -43999317 - L2 LINE L2 -33 3280 3182 309 26 0 0 chr11 106784485 106784523 -43999030 + (TG)n Simple_repeat Simple_repeat 1 38 0 310 351 42 31 chr11 106784695 106784954 -43998599 - MIR SINE MIR 0 262 1 1912 215 77 77 chr11 106785340 106785545 -43998008 + L1MA9 LINE L1 5575 5779 -533 264 30 0 0 chr11 106785545 106785578 -43997975 + (CA)n Simple_repeat Simple_repeat 2 34 0 1912 215 77 77 chr11 106785578 106786085 -43997468 + L1MA9 LINE L1 5778 6287 -25 352 281 83 0 chr11 106786403 106786499 -43997054 + MIR SINE MIR 11 114 -148 180 334 150 29 chr11 106787036 106787416 -43996137 + L2 LINE L2 1934 2359 -955 430 248 47 16 chr11 106787423 106787552 -43996001 + LTR41 LTR ERVL 9 141 -632 310 250 55 106 chr11 106787895 106788131 -43995422 + LTR41 LTR ERVL 549 772 -1 3456 332 54 24 chr11 106788962 106790721 -43992832 + HERVL LTR ERVL 1033 2843 -2811 1840 269 74 66 chr11 106790724 106791590 -43991963 + HERVL LTR ERVL 3718 4590 -1174 26 30 0 0 chr11 106791719 106791752 -43991801 + AT_rich Low_complexity Low_complexity 1 33 0 1218 176 10 0 chr11 106791765 106791970 -43991583 - AluJo SINE Alu -101 211 5 1147 194 28 74 chr11 106792007 106792291 -43991262 + MER67D LTR ERV1 1 271 -243 201 381 110 0 chr11 106792294 106792412 -43991141 + L2 LINE L2 2601 2731 -583 1116 216 3 73 chr11 106792746 106793033 -43990520 + AluJo SINE Alu 23 289 -23 310 379 24 52 chr11 106793233 106793444 -43990109 + L2 LINE L2 3066 3270 -2 2635 172 107 85 chr11 106793561 106794422 -43989131 + MER106B DNA MER1_type 1 880 -179 234 0 0 0 chr11 106794926 106794952 -43988601 + (A)n Simple_repeat Simple_repeat 1 26 0 315 381 13 76 chr11 106795690 106795992 -43987561 - L2 LINE L2 -39 3233 2951 2995 185 80 14 chr11 106796177 106796868 -43986685 + L1MC3 LINE L1 7031 7766 -19 796 283 0 0 chr11 106796898 106797078 -43986475 - MER8 DNA MER2_type -59 180 1 1119 288 83 21 chr11 106798145 106799197 -43984356 - L1ME3 LINE L1 -289 5873 4738 222 118 0 0 chr11 106799259 106799293 -43984260 + (TG)n Simple_repeat Simple_repeat 2 35 0 281 236 14 0 chr11 106799384 106799456 -43984097 - L1ME3 LINE L1 -1609 4537 4465 313 367 89 34 chr11 106799462 106799898 -43983655 + HAL1b LINE L1 338 797 -551 22 0 0 0 chr11 106799912 106799934 -43983619 + AT_rich Low_complexity Low_complexity 1 22 0 2606 55 0 0 chr11 106800893 106801202 -43982351 - AluY SINE Alu -2 309 1 282 303 83 18 chr11 106801236 106801345 -43982208 - MER91C DNA MER1_type -1 139 24 529 266 98 5 chr11 106801360 106801544 -43982009 - MIR SINE MIR -39 223 23 2198 105 3 3 chr11 106802113 106802408 -43981145 - AluSc SINE Alu -14 295 1 2319 83 0 3 chr11 106803205 106803505 -43980048 - AluSg SINE Alu -11 299 1 250 222 19 0 chr11 106803829 106803883 -43979670 - MLT1E2 LTR MaLR -460 166 112 372 250 0 60 chr11 106803924 106804040 -43979513 - MLT1E2 LTR MaLR -517 109 1 554 165 43 0 chr11 106804046 106804161 -43979392 - L1M4 LINE L1 -2364 4280 4161 234 289 0 0 chr11 106804156 106804239 -43979314 - L1M4 LINE L1 -3057 3587 3505 * 1078 216 21 12 chr11 106804255 106804496 -43979057 - L1M4 LINE L1 -5573 969 727 2061 106 0 11 chr11 106804499 106804774 -43978779 - AluSx SINE Alu -38 274 3 2550 78 26 0 chr11 106804888 106805235 -43978318 - L1PA7 LINE L1 0 6154 5799 1736 259 95 52 chr11 106805277 106805787 -43977766 - L1M4 LINE L1 -5856 686 141 2188 122 0 28 chr11 106805787 106806108 -43977445 - AluSx SINE Alu 0 312 1 1736 259 95 52 chr11 106806108 106806247 -43977306 - L1M4 LINE L1 -6401 141 9 389 329 172 15 chr11 106806327 106806670 -43976883 + L3 LINE CR1 460 856 -721 189 435 43 0 chr11 106806856 106806994 -43976559 - L2 LINE L2 -4 3268 3125 217 284 102 55 chr11 106808368 106808495 -43975058 - MIR SINE MIR -10 252 120 304 305 94 63 chr11 106809225 106809619 -43973934 + L2 LINE L2 2241 2646 -668 7918 27 2 0 chr11 106809631 106811345 -43972208 + L1PA3 LINE L1 4439 6155 0 459 322 79 58 chr11 106811458 106811852 -43971701 + L2 LINE L2 2912 3313 0 3147 145 17 62 chr11 106812110 106812751 -43970802 + LTR9 LTR ERV1 1 612 0 422 275 95 34 chr11 106813724 106813986 -43969567 + L1ME2 LINE L1 38 315 -6081 21 0 0 0 chr11 106814149 106814170 -43969383 + AT_rich Low_complexity Low_complexity 1 21 0 4722 225 57 32 chr11 106814295 106815710 -43967843 + Charlie1a DNA MER1_type 6 1455 0 1160 271 119 39 chr11 106815776 106817974 -43965579 + L1ME2 LINE L1 672 2999 -3216 * 4790 186 2 3 chr11 106817966 106818910 -43964643 - L1 LINE L1 -1303 4843 3901 500 230 7 7 chr11 106818913 106819048 -43964505 + L1P LINE L1 4990 5124 -1022 662 142 0 18 chr11 106819055 106819168 -43964385 + L1PB1 LINE L1 6038 6148 -3 593 262 148 35 chr11 106819174 106819808 -43963745 + L1ME2 LINE L1 2966 3671 -2544 1225 267 51 11 chr11 106819849 106820430 -43963123 + L1ME2 LINE L1 5071 5688 -545 694 257 120 7 chr11 106820483 106820759 -43962794 + L1ME2 LINE L1 5879 6185 -48 21 36 0 0 chr11 106821220 106821248 -43962305 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr11 106822074 106822095 -43961458 + (T)n Simple_repeat Simple_repeat 1 21 0 533 284 95 3 chr11 106822662 106822947 -43960606 - L1M4 LINE L1 -1767 4379 4069 249 304 29 10 chr11 106825028 106825130 -43958423 - MER58 DNA MER1_type -2316 104 1 395 380 22 5 chr11 106825135 106825319 -43958234 - L2 LINE L2 -639 2675 2489 300 53 0 0 chr11 106827904 106827942 -43955611 + (CA)n Simple_repeat Simple_repeat 2 39 0 228 351 42 47 chr11 106827995 106828186 -43955367 - L3 LINE CR1 -148 1429 1240 259 242 0 0 chr11 106828319 106828385 -43955168 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 1313 260 34 33 chr11 106828395 106828935 -43954618 - MLT2F LTR ERVL -68 595 1 294 321 30 42 chr11 106829128 106829293 -43954260 - MIR3 SINE MIR -23 185 23 24 85 0 0 chr11 106829293 106829352 -43954201 + AT_rich Low_complexity Low_complexity 1 59 0 1512 112 27 19 chr11 106831728 106831986 -43951567 + L1PA10 LINE L1 5909 6168 0 275 303 64 59 chr11 106833199 106833419 -43950134 - MLT1I LTR MaLR -237 312 58 249 279 0 25 chr11 106833660 106833739 -43949814 - L2 LINE L2 -8 3305 3229 544 272 99 24 chr11 106834310 106834523 -43949030 - MIR SINE MIR -4 258 30 447 285 61 6 chr11 106835885 106836050 -43947503 - MLT1K LTR MaLR 0 588 415 1771 158 31 47 chr11 106836061 106836378 -43947175 - AluJb SINE Alu 0 312 1 189 298 0 18 chr11 106836464 106836521 -43947032 + L3b LINE CR1 1278 1333 -250 333 214 23 122 chr11 106837518 106837649 -43945904 - MLT1I LTR MaLR -19 390 273 1890 144 7 17 chr11 106838267 106838565 -43944988 - AluSx SINE Alu -17 295 1 427 245 61 86 chr11 106838902 106839147 -43944406 - MLT1K LTR MaLR -18 570 332 1554 237 134 37 chr11 106839219 106839784 -43943769 + MLT1E2 LTR MaLR 7 626 0 22 0 0 0 chr11 106840027 106840049 -43943504 + AT_rich Low_complexity Low_complexity 1 22 0 267 31 0 0 chr11 106840116 106840148 -43943405 + (TG)n Simple_repeat Simple_repeat 2 33 0 789 194 6 48 chr11 106840150 106840315 -43943238 - FAM SINE Alu -17 158 1 1250 290 49 51 chr11 106841885 106842427 -43941126 + L2 LINE L2 2516 3058 -255 1961 106 44 24 chr11 106842427 106842720 -43940833 + AluSg SINE Alu 1 299 -11 1250 290 49 51 chr11 106842720 106842924 -43940629 + L2 LINE L2 3058 3261 -52 23 54 0 0 chr11 106843928 106843965 -43939588 + AT_rich Low_complexity Low_complexity 1 37 0 198 0 0 0 chr11 106845421 106845443 -43938110 + (T)n Simple_repeat Simple_repeat 1 22 0 4616 69 106 0 chr11 106845593 106846215 -43937338 - LTR12 LTR ERV1 0 688 1 556 285 91 28 chr11 106847396 106847833 -43935720 - MER57A LTR ERV1 -1 402 1 15232 109 11 12 chr11 106849476 106852682 -43930871 - HERV9 LTR ERV1 -1936 502 17 4220 119 120 32 chr11 106852682 106853441 -43930112 - LTR12 LTR ERV1 0 826 1 894 172 112 49 chr11 106853519 106853786 -43929767 - pTR5 LTR ERV1 -1410 1028 745 1005 84 7 26 chr11 106853786 106853940 -43929613 + L1PA10 LINE L1 6018 6168 0 21 36 0 0 chr11 106854104 106854132 -43929421 + AT_rich Low_complexity Low_complexity 1 28 0 250 125 0 31 chr11 106854177 106854241 -43929312 + (TA)n Simple_repeat Simple_repeat 1 62 0 233 348 17 9 chr11 106854245 106854360 -43929193 - L2 LINE L2 -5 3308 3193 406 267 104 66 chr11 106854543 106854685 -43928868 - L2 LINE L2 -7 3306 3171 1595 153 50 25 chr11 106854685 106854967 -43928586 + AluJb SINE Alu 1 289 -23 406 267 104 66 chr11 106854967 106855112 -43928441 - L2 LINE L2 -142 3171 3008 358 289 79 0 chr11 106855227 106855341 -43928212 - L2 LINE L2 0 3313 3191 219 308 77 0 chr11 106855348 106855413 -43928140 - MIR SINE MIR -148 114 45 2302 113 3 0 chr11 106855423 106855733 -43927820 - AluSq SINE Alu -2 311 1 1626 83 0 14 chr11 106855798 106856016 -43927537 - AluSg/x SINE Alu 0 312 98 303 268 28 70 chr11 106856867 106857009 -43926544 + MER89-int LTR ERV1 355 490 -4446 393 292 105 51 chr11 106857405 106857795 -43925758 + MER89-int LTR ERV1 158 568 -4079 531 283 38 51 chr11 106859142 106859379 -43924174 + MER89-int LTR ERV1 800 1033 -3903 260 240 27 27 chr11 106860263 106860338 -43923215 + MER89-int LTR ERV1 5269 5343 -1458 3915 195 27 10 chr11 106860409 106861215 -43922338 - L1MB7 LINE L1 -17 6167 5348 1125 245 18 71 chr11 106862882 106863262 -43920291 + MER92C LTR ERV1 193 552 -2 26 74 0 0 chr11 106864131 106864185 -43919368 + AT_rich Low_complexity Low_complexity 1 54 0 2510 51 3 0 chr11 106864393 106864689 -43918864 - AluY SINE Alu -12 299 3 1293 185 98 43 chr11 106866179 106866504 -43917049 + MER2 DNA MER2_type 2 344 0 2067 119 0 7 chr11 106866686 106866980 -43916573 + AluSc SINE Alu 1 292 -17 2098 144 83 13 chr11 106867692 106868149 -43915404 - L1MA4 LINE L1 0 6300 5812 276 317 77 0 chr11 106868371 106868470 -43915083 - MER5A DNA MER1_type -35 143 48 1464 233 68 47 chr11 106868471 106869030 -43914523 + L1ME3A LINE L1 5370 5940 -230 214 151 0 38 chr11 106869086 106869139 -43914414 + T-rich Low_complexity Low_complexity 4 54 0 290 298 99 10 chr11 106869276 106869497 -43914056 + L1M3 LINE L1 5348 5463 -708 253 321 74 0 chr11 106869533 106869614 -43913939 + L2 LINE L2 3227 3313 0 296 319 25 25 chr11 106869908 106870068 -43913485 + HAL1b LINE L1 1185 1344 -4 25 51 0 0 chr11 106870069 106870108 -43913445 + AT_rich Low_complexity Low_complexity 1 39 0 255 79 0 0 chr11 106870842 106870880 -43912673 + (TG)n Simple_repeat Simple_repeat 2 39 0 480 354 22 62 chr11 106871151 106871654 -43911899 + ERVL LTR ERVL 1249 1731 -4033 776 328 78 34 chr11 106871704 106872476 -43911077 + ERVL LTR ERVL 1840 2663 -2333 2311 162 70 48 chr11 106872476 106872976 -43910577 - MER67D LTR ERV1 -3 511 1 776 328 78 34 chr11 106872976 106873231 -43910322 + ERVL LTR ERVL 2663 2905 -2091 422 306 69 17 chr11 106873249 106873422 -43910131 + ERVL LTR ERVL 5091 5272 -492 25760 148 13 27 chr11 106873875 106880318 -43903235 + L1PA11 LINE L1 59 6487 -2 353 313 95 15 chr11 106880518 106880746 -43902807 + LTR50 LTR ERVL 1 218 -305 21 0 0 0 chr11 106883819 106883840 -43899713 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 106884023 106884044 -43899509 + AT_rich Low_complexity Low_complexity 1 21 0 2305 110 0 0 chr11 106884843 106885144 -43898409 + AluSx SINE Alu 1 301 -11 188 302 93 35 chr11 106885225 106885311 -43898242 + L2 LINE L2 3176 3266 -47 377 262 49 49 chr11 106886615 106886779 -43896774 - L2 LINE L2 -2 3311 3148 221 370 20 62 chr11 106887054 106887200 -43896353 + L2 LINE L2 3125 3264 -8 534 306 115 4 chr11 106887342 106887577 -43895976 + MIR SINE MIR 2 262 0 1514 194 0 42 chr11 106888803 106889113 -43894440 - AluJo SINE Alu -10 302 6 968 284 62 18 chr11 106889213 106889554 -43893999 + LTR16B LTR ERVL 35 390 -74 2889 9 0 3 chr11 106889782 106890101 -43893452 - AluYb8 SINE Alu 0 318 1 608 352 13 13 chr11 106892695 106892931 -43890622 - MIR SINE MIR -11 251 16 22 56 0 0 chr11 106893333 106893369 -43890184 + AT_rich Low_complexity Low_complexity 1 36 0 4535 137 8 24 chr11 106893839 106894185 -43889368 - L1MA5 LINE L1 0 6300 5950 2181 115 3 0 chr11 106894185 106894480 -43889073 - AluSx SINE Alu -16 296 1 4535 137 8 24 chr11 106894480 106894928 -43888625 - L1MA5 LINE L1 -350 5950 5519 636 149 9 28 chr11 106894929 106895036 -43888517 + MER6A DNA MER2_type 14 118 -487 422 186 12 12 chr11 106895039 106895125 -43888428 + MER6A DNA MER2_type 519 604 -1 852 111 0 0 chr11 106895126 106895252 -43888301 - L1MA5 LINE L1 -771 5532 5407 212 267 22 0 chr11 106897061 106897106 -43886447 + MIR SINE MIR 53 98 -164 317 281 12 0 chr11 106897135 106897217 -43886336 + MIR SINE MIR 172 254 -8 217 255 78 0 chr11 106897263 106897314 -43886239 + MER91C DNA MER1_type 36 90 -50 969 337 71 37 chr11 106898400 106898935 -43884618 + L2 LINE L2 48 563 -2751 3350 162 110 24 chr11 106898935 106899600 -43883953 + MER72 LTR ERV1 1 722 0 969 337 71 37 chr11 106899600 106899975 -43883578 + L2 LINE L2 563 1237 -2077 3594 163 18 21 chr11 106899991 106900648 -43882905 + Tigger3b DNA MER2_type 1 655 -576 4773 139 45 2 chr11 106900652 106901472 -43882081 - L1MA3 LINE L1 -1 6304 5450 2472 126 11 3 chr11 106901472 106901846 -43881707 + MSTA-int LTR MaLR 1274 1650 -1 2526 152 24 9 chr11 106901893 106902315 -43881238 + MSTA LTR MaLR 1 428 0 5289 190 24 17 chr11 106902315 106903822 -43879731 - L1M1 LINE L1 -5513 2052 15 3132 138 20 53 chr11 106903822 106904429 -43879124 + Tigger3b DNA MER2_type 646 1232 0 2876 276 125 42 chr11 106904434 106906330 -43877223 + L2 LINE L2 1250 3313 0 1965 104 9 52 chr11 106907553 106907879 -43875674 + AluSx SINE Alu 1 312 0 261 0 0 0 chr11 106907905 106907934 -43875619 + (A)n Simple_repeat Simple_repeat 1 29 0 231 254 36 91 chr11 106908105 106908215 -43875338 + AluSp/q SINE Alu 200 303 0 322 344 70 38 chr11 106908423 106908580 -43874973 + L2 LINE L2 3106 3267 -5 222 396 54 0 chr11 106908591 106908702 -43874851 - L2 LINE L2 -5 3267 3151 337 202 142 44 chr11 106908864 106909047 -43874506 - L1ME4a LINE L1 -22 6099 5899 2626 48 0 0 chr11 106910666 106910977 -43872576 + AluY SINE Alu 1 311 0 207 69 0 0 chr11 106911141 106911170 -43872383 + (A)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chr11 106911313 106911339 -43872214 + AT_rich Low_complexity Low_complexity 1 26 0 658 22 22 22 chr11 106911537 106911629 -43871924 + (TCTA)n Simple_repeat Simple_repeat 2 93 0 482 282 15 0 chr11 106912042 106912173 -43871380 + MER94 DNA DNA 1 133 -1 339 366 50 12 chr11 106912937 106913098 -43870455 - MIR SINE MIR -71 191 25 205 200 0 0 chr11 106913590 106913630 -43869923 + (TTTAA)n Simple_repeat Simple_repeat 3 42 0 385 229 19 9 chr11 106914161 106914266 -43869287 + MER103 DNA DNA 39 144 -22 2167 126 0 0 chr11 106914623 106914925 -43868628 - AluSx SINE Alu -9 303 2 32 0 0 0 chr11 106914991 106915023 -43868530 + AT_rich Low_complexity Low_complexity 1 32 0 417 39 0 0 chr11 106915593 106915602 -43867951 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 417 39 0 0 chr11 106915602 106915653 -43867900 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 450 228 114 45 chr11 106916268 106916670 -43866883 - MLT1H1 LTR MaLR 0 555 118 255 270 64 108 chr11 106917835 106918039 -43865514 - L3b LINE CR1 -188 1395 1201 224 30 30 0 chr11 106918378 106918411 -43865142 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr11 106919998 106920022 -43863531 + AT_rich Low_complexity Low_complexity 1 24 0 340 245 64 0 chr11 106920290 106920384 -43863169 + MLT2C1 LTR ERVL 79 178 -219 1044 255 22 56 chr11 106920648 106921005 -43862548 + MLT2C1 LTR ERVL 1 345 -52 3867 266 93 46 chr11 106921061 106922506 -43861047 + ERVL LTR ERVL 2 1514 -4250 273 250 20 100 chr11 106922497 106922597 -43860956 + ERVL LTR ERVL 1940 2031 -3623 * 1920 171 14 76 chr11 106922610 106923042 -43860511 - MLT2D LTR ERVL -7 407 3 5117 242 34 8 chr11 106923042 106924735 -43858818 + ERVL LTR ERVL 2074 3854 -1671 2606 45 0 3 chr11 106924735 106925047 -43858506 + AluY SINE Alu 1 311 0 1436 66 5 15 chr11 106925194 106925390 -43858163 + L1P4 LINE L1 5485 5678 -490 198 235 0 59 chr11 106925587 106925638 -43857915 + L3b LINE CR1 1513 1560 -23 29 28 0 0 chr11 106926446 106926482 -43857071 + AT_rich Low_complexity Low_complexity 1 36 0 244 118 0 0 chr11 106926802 106926836 -43856717 + Tigger2 DNA MER2_type 1 34 -2684 342 333 24 0 chr11 106927341 106927467 -43856086 + MIR SINE MIR 117 245 -17 194 105 26 0 chr11 106927487 106927525 -43856028 + (TTA)n Simple_repeat Simple_repeat 2 40 0 25 0 0 0 chr11 106929324 106929349 -43854204 + AT_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr11 106929564 106929604 -43853949 + AT_rich Low_complexity Low_complexity 1 40 0 276 276 0 2 chr11 106929645 106929737 -43853816 + L1ME LINE L1 5637 5727 -435 347 173 0 40 chr11 106929757 106929832 -43853721 + L1PA10 LINE L1 6096 6167 -1 22 0 0 0 chr11 106930244 106930266 -43853287 + AT_rich Low_complexity Low_complexity 1 22 0 476 346 103 26 chr11 106930403 106930715 -43852838 + L2 LINE L2 2978 3313 0 23 0 0 0 chr11 106930815 106930838 -43852715 + AT_rich Low_complexity Low_complexity 1 23 0 4898 26 2 2 chr11 106931023 106931609 -43851944 + L1PA4 LINE L1 5564 6149 -6 312 329 120 81 chr11 106931861 106932195 -43851358 - L2 LINE L2 -1 3271 2925 235 304 0 43 chr11 106933024 106933093 -43850460 + MIR SINE MIR 3 68 -194 * 242 246 66 0 chr11 106933082 106933143 -43850410 - MIR SINE MIR -115 147 83 5914 184 69 44 chr11 106933162 106933992 -43849561 - L1MC3 LINE L1 -546 7239 6356 2154 125 7 0 chr11 106933992 106934296 -43849257 + AluSq SINE Alu 1 306 -7 5914 184 69 44 chr11 106934296 106934923 -43848630 - L1MC3 LINE L1 -1429 6356 5746 1841 312 32 20 chr11 106934906 106935784 -43847769 - L1MEc LINE L1 -2068 4147 3260 * 1550 269 136 11 chr11 106935791 106936528 -43847025 - L1MEc LINE L1 -3036 3179 2351 1332 219 67 9 chr11 106936531 106936860 -43846693 - L1MC2 LINE L1 0 6344 5997 2826 269 40 45 chr11 106936863 106938334 -43845219 - L1MEc LINE L1 -4003 2393 930 4628 167 45 34 chr11 106938336 106939296 -43844257 + L1MA4 LINE L1 5323 6292 -8 1171 262 43 36 chr11 106939294 106939598 -43843955 - L1MEc LINE L1 -5457 939 639 * 2039 117 20 38 chr11 106939598 106939941 -43843612 + MER1B DNA MER1_type 1 337 0 1171 262 43 36 chr11 106939941 106940480 -43843073 - L1MEc LINE L1 -5757 639 45 1971 226 108 24 chr11 106940487 106941154 -43842399 + Charlie1 DNA MER1_type 2038 2760 -1 185 283 62 35 chr11 106941676 106941789 -43841764 - L2 LINE L2 -86 3227 3112 240 111 0 0 chr11 106942499 106942535 -43841018 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 204 279 29 0 chr11 106942644 106942712 -43840841 - MIR SINE MIR -18 244 175 428 358 27 0 chr11 106943457 106943605 -43839948 - MIR3 SINE MIR -2 206 55 1943 70 0 12 chr11 106943788 106944045 -43839508 - L1PA10 LINE L1 -490 5678 5425 3228 97 8 14 chr11 106944045 106944525 -43839028 + L1PA10 LINE L1 5680 6159 -9 754 309 60 11 chr11 106945314 106945599 -43837954 + L2 LINE L2 2186 2484 -830 11924 20 0 1 chr11 106945835 106948000 -43835553 - L1PA2 LINE L1 0 6155 3992 575 320 87 50 chr11 106948015 106948660 -43834893 + L2 LINE L2 2582 3241 -72 548 227 93 0 chr11 106948660 106948832 -43834721 - MER53 DNA DNA -1 188 1 575 320 87 50 chr11 106948832 106948907 -43834646 + L2 LINE L2 3241 3312 -1 24 53 0 0 chr11 106949674 106949712 -43833841 + AT_rich Low_complexity Low_complexity 1 38 0 189 0 0 0 chr11 106950740 106950761 -43832792 + (A)n Simple_repeat Simple_repeat 1 21 0 201 74 0 0 chr11 106950925 106950952 -43832601 + (A)n Simple_repeat Simple_repeat 1 27 0 1244 39 0 6 chr11 106951897 106952053 -43831500 + L1PA4 LINE L1 6000 6154 -1 201 74 0 0 chr11 106952064 106952091 -43831462 + (A)n Simple_repeat Simple_repeat 1 27 0 591 278 46 21 chr11 106952149 106952541 -43831012 + L1ME3A LINE L1 5287 5907 -263 2097 111 0 3 chr11 106952683 106953001 -43830552 + AluSx SINE Alu 3 319 0 29 70 0 0 chr11 106953856 106953913 -43829640 + AT_rich Low_complexity Low_complexity 1 57 0 7473 26 7 1 chr11 106954251 106955266 -43828287 + L1PA4 LINE L1 5136 6155 0 438 264 93 62 chr11 106955343 106955536 -43828017 + MIR SINE MIR 64 262 0 357 339 17 0 chr11 106955875 106955993 -43827560 - MIR SINE MIR -77 185 66 456 237 52 138 chr11 106957360 106957744 -43825809 - Charlie7 DNA MER1_type -1868 744 394 657 207 80 32 chr11 106957744 106957932 -43825621 - L1M4 LINE L1 -1255 4891 4695 3212 169 89 3 chr11 106957979 106958706 -43824847 - L1MA8 LINE L1 -281 6010 5206 * 5771 173 38 7 chr11 106958703 106959171 -43824382 + L1 LINE L1 4001 4453 -1693 318 50 0 0 chr11 106959171 106959211 -43824342 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 5771 173 38 7 chr11 106959211 106959913 -43823640 + L1 LINE L1 4453 5208 -938 216 91 23 45 chr11 106960292 106960336 -43823217 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 29 98 0 0 chr11 106960748 106960840 -43822713 + AT_rich Low_complexity Low_complexity 1 92 0 2172 105 26 3 chr11 106961060 106961365 -43822188 - AluSx SINE Alu 0 312 1 28 61 0 0 chr11 106961562 106961611 -43821942 + AT_rich Low_complexity Low_complexity 1 49 0 291 344 58 43 chr11 106961813 106962089 -43821464 + MLT1I LTR MaLR 1 280 -129 1034 248 97 29 chr11 106962091 106962474 -43821079 - MLT1C LTR MaLR 0 467 59 428 226 11 0 chr11 106962513 106962606 -43820947 + MLT1I LTR MaLR 308 401 -8 459 0 0 0 chr11 106962896 106962947 -43820606 + (TG)n Simple_repeat Simple_repeat 2 52 0 556 341 34 10 chr11 106962984 106963189 -43820364 - MIR SINE MIR -6 256 47 1010 336 32 14 chr11 106964669 106965103 -43818450 - L2 LINE L2 -7 3306 2865 2279 111 28 30 chr11 106965852 106966213 -43817340 - THE1B LTR MaLR -4 360 1 10724 110 17 1 chr11 106966215 106967768 -43815785 - THE1B-int LTR MaLR -2 1578 1 2149 128 25 35 chr11 106967768 106968136 -43815417 - THE1B LTR MaLR 0 364 1 681 126 0 0 chr11 106968608 106968719 -43814834 + (GA)n Simple_repeat Simple_repeat 2 112 0 24323 43 6 1 chr11 106968981 106972817 -43810736 - L1PA5 LINE L1 -8 6146 2290 3519 59 0 21 chr11 106972817 106973295 -43810258 + L1PA5 LINE L1 1810 2277 -3869 1547 222 24 9 chr11 106974744 106975077 -43808476 + MLT1F LTR MaLR 157 494 -48 189 360 58 14 chr11 106978075 106978214 -43805339 + L2 LINE L2 3148 3292 -21 6209 26 0 0 chr11 106978479 106979208 -43804345 + L1PA3 LINE L1 5424 6152 -3 23 33 0 0 chr11 106980898 106980928 -43802625 + AT_rich Low_complexity Low_complexity 1 30 0 37 52 0 0 chr11 106980974 106981032 -43802521 + AT_rich Low_complexity Low_complexity 1 58 0 962 298 130 31 chr11 106981070 106981685 -43801868 + L2 LINE L2 1792 2524 -790 649 255 38 26 chr11 106981994 106982261 -43801292 + L1MC3 LINE L1 4270 4539 -1607 10325 188 65 33 chr11 106982265 106984965 -43798588 + L1MC3 LINE L1 4909 7702 -83 2657 180 12 88 chr11 106984965 106985627 -43797926 - LTR9 LTR ERV1 0 612 1 10325 188 65 33 chr11 106985627 106985708 -43797845 + L1MC3 LINE L1 7702 7779 -6 1558 99 5 0 chr11 106985809 106986011 -43797542 + AluSp SINE Alu 86 288 -25 212 0 36 0 chr11 106986014 106986042 -43797511 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 310 325 85 69 chr11 106986253 106986441 -43797112 + MER91A DNA MER1_type 4 194 -2 508 304 141 25 chr11 106986875 106987428 -43796125 - L1ME3 LINE L1 -258 5904 5288 386 313 35 17 chr11 106987493 106987781 -43795772 - L1ME3 LINE L1 -875 5271 4979 314 258 116 73 chr11 106987799 106988032 -43795521 - L1ME3 LINE L1 -1265 4881 4639 1468 274 97 16 chr11 106989084 106990033 -43793520 - L1ME3 LINE L1 -2894 3252 2227 2255 88 7 0 chr11 106990044 106990341 -43793212 - AluSp SINE Alu -14 299 1 1045 239 20 47 chr11 106990654 106990909 -43792644 + MIR SINE MIR 5 252 -10 1192 206 47 30 chr11 106991216 106991517 -43792036 + MER33 DNA MER1_type 19 324 0 307 279 68 43 chr11 106991582 106991743 -43791810 + L2 LINE L2 3140 3304 -9 201 333 0 13 chr11 106992126 106992201 -43791352 - L3b LINE CR1 -360 1223 1150 1624 191 0 13 chr11 106992510 106992813 -43790740 + Tigger1 DNA MER2_type 3 301 -2117 1533 133 27 8 chr11 106992808 106993064 -43790489 + Tigger1 DNA MER2_type 664 924 -1494 * 6419 139 18 1 chr11 106993071 106994096 -43789457 + Tigger1 DNA MER2_type 1377 2418 0 24 0 0 0 chr11 106994096 106994120 -43789433 + AT_rich Low_complexity Low_complexity 1 24 0 1439 237 53 20 chr11 106994750 106995108 -43788445 + MLT1A2 LTR MaLR 1 370 -4 235 167 0 0 chr11 106996086 106996122 -43787431 - U2 snRNA snRNA -152 36 1 586 267 55 0 chr11 106996122 106996287 -43787266 - MIR SINE MIR -32 230 57 599 248 6 25 chr11 106996373 106996534 -43787019 + MIR SINE MIR 103 260 -2 1326 242 76 50 chr11 106998552 106999077 -43784476 - L1ME3 LINE L1 -1 6161 5623 4103 135 16 0 chr11 106999095 106999768 -43783785 - L1MA5 LINE L1 -2 6298 5615 5819 143 20 14 chr11 106999778 107001034 -43782519 + L1PA16 LINE L1 4903 6165 -1 21 57 0 0 chr11 107001070 107001105 -43782448 + AT_rich Low_complexity Low_complexity 1 35 0 247 119 17 34 chr11 107002088 107002147 -43781406 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 400 286 163 17 chr11 107003674 107003852 -43779701 - MIR SINE MIR -13 249 46 248 240 0 31 chr11 107004022 107004057 -43779496 + (TA)n Simple_repeat Simple_repeat 1 36 -57 8246 184 66 27 chr11 107004057 107005746 -43777807 + MER52A LTR ERV1 1 1755 0 248 240 0 31 chr11 107005746 107005806 -43777747 + (TA)n Simple_repeat Simple_repeat 36 93 0 21 0 0 0 chr11 107006410 107006431 -43777122 + AT_rich Low_complexity Low_complexity 1 21 0 198 370 8 34 chr11 107006709 107006828 -43776725 + MIR SINE MIR 97 212 -50 21 0 0 0 chr11 107007706 107007727 -43775826 + AT_rich Low_complexity Low_complexity 1 21 0 331 340 69 31 chr11 107009756 107009915 -43773638 - MER5A DNA MER1_type -7 182 18 255 174 193 64 chr11 107009951 107010060 -43773493 - L1ME4a LINE L1 0 6121 5999 301 230 23 23 chr11 107010145 107010232 -43773321 - L1MC4 LINE L1 -1342 6700 6614 348 308 46 31 chr11 107010311 107010506 -43773047 - HAL1 LINE L1 -906 1601 1404 278 321 68 14 chr11 107010553 107010774 -43772779 - L1MC4 LINE L1 -1882 5926 5694 484 349 150 19 chr11 107011077 107011438 -43772115 - LTR16A LTR ERVL -27 423 16 180 77 0 0 chr11 107011726 107011752 -43771801 + (TAA)n Simple_repeat Simple_repeat 1 26 0 278 174 0 0 chr11 107011952 107011998 -43771555 - HERV16 LTR ERVL -613 4383 4338 781 376 61 17 chr11 107012170 107012809 -43770744 - HERV16 LTR ERVL -1213 4441 3775 1286 205 156 13 chr11 107012809 107013116 -43770437 + MER76 LTR ERV 7 357 -331 265 327 27 7 chr11 107014679 107014829 -43768724 + MER70-int LTR ERVL 2511 2663 -2991 251 340 28 21 chr11 107015240 107015381 -43768172 + MER70-int LTR ERVL 2584 2725 -2805 479 282 29 23 chr11 107015804 107015978 -43767575 + MER70-int LTR ERVL 2487 2661 -2362 389 301 65 16 chr11 107017365 107017488 -43766065 + L1M4b LINE L1 294 422 -6437 2899 235 59 34 chr11 107017491 107018024 -43765529 + L1M4b LINE L1 808 1326 -5529 1588 136 14 0 chr11 107018024 107018303 -43765250 + L1MA3 LINE L1 6022 6304 -1 2899 235 59 34 chr11 107018303 107018892 -43764661 + L1M4b LINE L1 1326 1962 -4893 2478 196 76 0 chr11 107018993 107019456 -43764097 + L1PA13 LINE L1 1 498 -6289 * 2765 187 46 10 chr11 107019454 107020977 -43762576 + L1PA13 LINE L1 1223 2689 -4125 2143 128 51 23 chr11 107020977 107021329 -43762224 - THE1B LTR MaLR -2 362 1 2765 187 46 10 chr11 107021329 107024987 -43758566 + L1PA13 LINE L1 2689 6813 -1 647 299 55 30 chr11 107024987 107025483 -43758070 + L1M4b LINE L1 2010 2668 -4470 303 296 0 11 chr11 107025529 107025617 -43757936 + L1M4b LINE L1 2476 2562 -4576 23 33 0 0 chr11 107025914 107025944 -43757609 + AT_rich Low_complexity Low_complexity 1 30 0 257 296 34 23 chr11 107026630 107026769 -43756784 - MIR SINE MIR -61 147 16 186 43 0 0 chr11 107027809 107027832 -43755721 + (TA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr11 107029976 107029998 -43753555 + AT_rich Low_complexity Low_complexity 1 22 0 1824 140 63 36 chr11 107030059 107030424 -43753129 - THE1C LTR MaLR 0 375 1 9145 138 20 43 chr11 107030429 107032038 -43751515 - THE1C-int LTR MaLR -6 1574 4 1842 156 34 42 chr11 107032040 107032418 -43751135 - THE1C LTR MaLR 0 375 1 234 222 0 19 chr11 107032467 107032521 -43751032 + MER5B DNA MER1_type 2 54 -124 727 304 36 71 chr11 107032780 107033218 -43750335 + LTR33A LTR ERVL 66 488 -35 313 339 59 8 chr11 107034127 107034245 -43749308 + L2 LINE L2 3177 3300 -13 612 260 0 8 chr11 107034750 107034877 -43748676 + MLT2E LTR ERVL 1 126 -502 1661 204 22 6 chr11 107034900 107035224 -43748329 - MLT1A1 LTR MaLR -18 347 19 758 278 92 15 chr11 107035243 107035667 -43747886 + MLT2E LTR ERVL 137 628 0 25 75 0 0 chr11 107035946 107035999 -43747554 + AT_rich Low_complexity Low_complexity 1 53 0 232 286 133 10 chr11 107036227 107036325 -43747228 + L2 LINE L2 3163 3272 0 961 283 54 59 chr11 107036377 107036935 -43746618 - MLT1F1 LTR MaLR -12 555 1 671 83 0 117 chr11 107037001 107037121 -43746432 + AluSc SINE Alu 112 217 -92 464 246 156 47 chr11 107037838 107038049 -43745504 - L2 LINE L2 -1 3312 3079 23 0 0 0 chr11 107038360 107038383 -43745170 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr11 107038891 107038911 -43744642 + (GA)n Simple_repeat Simple_repeat 2 21 0 328 103 15 15 chr11 107038913 107038981 -43744572 + (TG)n Simple_repeat Simple_repeat 1 68 0 208 320 115 8 chr11 107040139 107040261 -43743292 + MIR3 SINE MIR 66 200 -8 22 70 0 0 chr11 107040395 107040438 -43743115 + AT_rich Low_complexity Low_complexity 1 43 0 380 247 0 0 chr11 107041477 107041566 -43741987 + L1MA6 LINE L1 6182 6270 -30 2871 141 26 92 chr11 107043008 107043627 -43739926 + LTR1 LTR ERV1 20 597 -188 268 289 63 47 chr11 107045022 107045149 -43738404 - MER5A DNA MER1_type -10 179 40 22 0 0 0 chr11 107045232 107045254 -43738299 + AT_rich Low_complexity Low_complexity 1 22 0 408 343 42 18 chr11 107045869 107046035 -43737518 - MIR SINE MIR -61 201 32 216 0 0 0 chr11 107046127 107046151 -43737402 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 804 181 78 30 chr11 107046161 107046327 -43737226 - AluJo SINE Alu -125 187 14 254 270 16 0 chr11 107046783 107046846 -43736707 + MIR SINE MIR 194 257 -5 340 290 107 23 chr11 107046910 107047041 -43736512 - MIR SINE MIR -108 154 13 276 292 51 107 chr11 107047175 107047353 -43736200 - MIR3 SINE MIR -1 207 40 2092 127 7 7 chr11 107048506 107048828 -43734725 - AluSq SINE Alu 0 313 1 33 0 0 0 chr11 107049064 107049097 -43734456 + AT_rich Low_complexity Low_complexity 1 33 0 2168 133 30 25 chr11 107049552 107049914 -43733639 - THE1B LTR MaLR 0 364 1 30 103 0 0 chr11 107050464 107050571 -43732982 + AT_rich Low_complexity Low_complexity 1 107 0 246 346 25 0 chr11 107052516 107052597 -43730956 + L3 LINE CR1 1422 1504 -73 2564 143 17 21 chr11 107052709 107053130 -43730423 - MSTB1 LTR MaLR -13 419 1 1679 289 26 4 chr11 107053257 107053763 -43729790 + LTR40a LTR ERVL 1 517 -2 859 192 117 14 chr11 107054310 107054524 -43729029 + MER46A DNA MER2_type 1 236 0 180 0 0 0 chr11 107054924 107054944 -43728609 + (CAA)n Simple_repeat Simple_repeat 2 21 0 275 296 96 0 chr11 107055494 107055614 -43727939 - MIR SINE MIR -61 147 32 1785 172 20 59 chr11 107056165 107056571 -43726982 + MLT1B LTR MaLR 1 390 0 1344 268 31 26 chr11 107056763 107057151 -43726402 + LTR16C LTR ERVL 100 489 -2 232 235 161 13 chr11 107057544 107057693 -43725860 - L1M4 LINE L1 -989 5157 4987 1309 161 86 86 chr11 107058912 107059204 -43724349 - AluJb SINE Alu -20 292 1 279 340 47 20 chr11 107059215 107059365 -43724188 + L2 LINE L2 2933 3086 -186 199 262 0 16 chr11 107059389 107059450 -43724103 + L2 LINE L2 3204 3263 -9 21 0 0 0 chr11 107059654 107059675 -43723878 + AT_rich Low_complexity Low_complexity 1 21 0 817 313 108 38 chr11 107059785 107060395 -43723158 + L2 LINE L2 2638 3280 -33 201 200 22 0 chr11 107060617 107060662 -43722891 + T-rich Low_complexity Low_complexity 3 48 0 1930 153 11 60 chr11 107061330 107061696 -43721857 + MER7A DNA MER2_type 1 346 0 23 33 0 0 chr11 107061821 107061851 -43721702 + AT_rich Low_complexity Low_complexity 1 30 0 186 302 32 16 chr11 107061871 107061934 -43721619 - MIR SINE MIR -132 130 67 597 221 82 0 chr11 107062877 107063035 -43720518 + L1ME3A LINE L1 5724 5894 -276 320 336 91 0 chr11 107063064 107063207 -43720346 + L1ME3A LINE L1 5964 6119 -51 251 381 29 0 chr11 107066106 107066211 -43717342 + MIR SINE MIR 123 230 -32 757 302 113 58 chr11 107067832 107067887 -43715666 + L1MC3 LINE L1 1 52 -5993 8859 94 12 3 chr11 107067887 107069927 -43713626 - L1PA7 LINE L1 -1 6153 4109 757 302 113 58 chr11 107069927 107070421 -43713132 + L1MC3 LINE L1 52 482 -5563 375 251 12 54 chr11 107070570 107070737 -43712816 + L1MC3 LINE L1 570 729 -5316 207 0 0 0 chr11 107070752 107070775 -43712778 + (A)n Simple_repeat Simple_repeat 1 23 0 383 211 18 102 chr11 107070803 107070862 -43712691 + L1MC3 LINE L1 762 824 -5221 2345 92 0 3 chr11 107070862 107071166 -43712387 + AluSp SINE Alu 1 303 -10 383 211 18 102 chr11 107071166 107071272 -43712281 + L1MC3 LINE L1 824 913 -5132 1717 197 50 75 chr11 107071318 107071397 -43712156 + L1MA9 LINE L1 5704 5784 -528 243 0 0 0 chr11 107071397 107071424 -43712129 + (TG)n Simple_repeat Simple_repeat 2 28 0 1717 197 50 75 chr11 107071424 107071888 -43711665 + L1MA9 LINE L1 5784 6233 -79 1928 187 19 56 chr11 107071888 107072315 -43711238 - MER21A LTR ERV1 -62 869 459 6224 204 61 6 chr11 107072326 107073795 -43709758 + L1 LINE L1 2545 4093 -2053 5876 249 59 33 chr11 107073799 107076157 -43707396 + L1MC3 LINE L1 2594 5014 -1550 807 236 127 41 chr11 107076209 107076523 -43707030 - L1M4 LINE L1 -1206 4940 4600 1737 221 78 5 chr11 107076524 107076932 -43706621 + MLT1D LTR MaLR 67 504 -1 555 268 12 40 chr11 107076960 107077210 -43706343 + L1MC3 LINE L1 5382 5624 -940 1866 185 159 2 chr11 107077210 107077643 -43705910 + MLT1D LTR MaLR 1 501 -4 661 197 25 39 chr11 107077650 107078063 -43705490 + L1MC3 LINE L1 5623 5845 -746 521 202 31 8 chr11 107078076 107078205 -43705348 + L1MC3 LINE L1 7834 7965 -238 338 290 83 49 chr11 107078592 107078755 -43704798 - MIR SINE MIR -70 138 20 23 33 0 0 chr11 107080195 107080225 -43703328 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr11 107081766 107081798 -43701755 + AT_rich Low_complexity Low_complexity 1 32 0 439 18 0 0 chr11 107081824 107081881 -43701672 - AluY SINE Alu -10 300 244 411 319 72 12 chr11 107081998 107082164 -43701389 - MIR SINE MIR -56 206 31 1055 265 123 66 chr11 107082200 107082613 -43700940 + L1ME LINE L1 3876 4264 -1882 3079 84 18 16 chr11 107082613 107083065 -43700488 + L1PA13 LINE L1 5710 6162 -1 1055 265 123 66 chr11 107083065 107083532 -43700021 + L1ME LINE L1 4264 4812 -1334 854 214 57 14 chr11 107083532 107083742 -43699811 + MER58A DNA MER1_type 5 223 -1 1055 265 123 66 chr11 107083742 107083767 -43699786 + L1ME LINE L1 4812 4834 -1312 212 302 0 0 chr11 107084057 107084110 -43699443 + L2 LINE L2 2933 2985 -328 694 317 37 12 chr11 107084123 107084546 -43699007 - LTR16C LTR ERVL -3 488 24 357 300 178 85 chr11 107084558 107084745 -43698808 + L2 LINE L2 3013 3230 -83 1768 100 15 4 chr11 107084745 107085006 -43698547 + AluY SINE Alu 46 309 -2 357 300 178 85 chr11 107085006 107085065 -43698488 + L2 LINE L2 3230 3282 -31 745 160 15 8 chr11 107085068 107085199 -43698354 + MLT1A2 LTR MaLR 4 135 -239 262 233 0 0 chr11 107085267 107085327 -43698226 + MLT1A2 LTR MaLR 302 361 -4 441 316 32 11 chr11 107085364 107085551 -43698002 + L1ME LINE L1 5436 5626 -538 1224 219 13 0 chr11 107085766 107085994 -43697559 - MER8 DNA MER2_type -3 236 6 320 372 25 0 chr11 107086191 107086312 -43697241 - MIR SINE MIR -119 143 20 267 103 0 0 chr11 107086564 107086603 -43696950 + (TG)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr11 107087118 107087141 -43696412 + AT_rich Low_complexity Low_complexity 1 23 0 236 314 29 73 chr11 107087183 107087320 -43696233 + MIR SINE MIR 76 206 -56 310 383 116 23 chr11 107087436 107088138 -43695415 - L2 LINE L2 0 3272 2496 28 61 0 0 chr11 107089273 107089322 -43694231 + AT_rich Low_complexity Low_complexity 1 49 0 35254 108 10 16 chr11 107089386 107095568 -43687985 + L1PA7 LINE L1 11 6154 0 242 59 0 0 chr11 107095855 107095889 -43687664 - L1PA5 LINE L1 -3 6151 6118 362 280 73 60 chr11 107096752 107096902 -43686651 - MIR3 SINE MIR -30 178 27 376 252 123 39 chr11 107098878 107099033 -43684520 + MIR SINE MIR 90 257 -5 305 313 96 30 chr11 107099064 107099230 -43684323 - MER5B DNA MER1_type 0 178 2 312 280 59 34 chr11 107100111 107100229 -43683324 - MIR SINE MIR 0 262 142 1125 253 36 1 chr11 107100235 107100606 -43682947 + LTR16A LTR ERVL 16 450 0 3100 246 101 21 chr11 107102163 107104673 -43678880 - L1MCb LINE L1 -2991 3573 757 270 0 0 0 chr11 107104821 107104851 -43678702 + (A)n Simple_repeat Simple_repeat 1 30 0 6101 211 36 34 chr11 107104851 107106282 -43677271 + ERVL-C1 LTR ERVL 3844 5277 -487 1746 199 48 16 chr11 107106285 107106656 -43676897 - MLT1B LTR MaLR -7 383 1 1085 217 32 7 chr11 107106656 107107091 -43676462 + ERVL-C1 LTR ERVL 5232 5750 -14 1471 202 36 47 chr11 107107096 107107457 -43676096 + MLT2C1 LTR ERVL 1 357 -40 226 61 0 30 chr11 107107508 107107541 -43676012 + MLT2C1 LTR ERVL 366 397 0 22 0 0 0 chr11 107108441 107108463 -43675090 + AT_rich Low_complexity Low_complexity 1 22 0 360 273 0 0 chr11 107109211 107109299 -43674254 + MLT1E LTR MaLR 1 88 -566 2127 111 10 0 chr11 107109450 107109748 -43673805 - AluSg SINE Alu -9 301 1 1284 261 90 8 chr11 107109750 107110107 -43673446 + MLT1E LTR MaLR 208 593 0 200 214 18 0 chr11 107110349 107110405 -43673148 + CT-rich Low_complexity Low_complexity 2 58 0 251 84 21 84 chr11 107110866 107110961 -43672592 + (TA)n Simple_repeat Simple_repeat 1 89 0 253 377 51 45 chr11 107114309 107114601 -43668952 - L2 LINE L2 -37 3235 2942 22 0 0 0 chr11 107114720 107114742 -43668811 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 107114828 107114849 -43668704 + AT_rich Low_complexity Low_complexity 1 21 0 181 296 163 0 chr11 107115487 107115585 -43667968 - MIR SINE MIR -4 258 145 * 288 130 0 0 chr11 107115580 107115626 -43667927 + (T)n Simple_repeat Simple_repeat 1 46 0 2259 88 0 13 chr11 107115748 107116053 -43667500 - AluY SINE Alu 0 311 11 1865 216 39 39 chr11 107116525 107117016 -43666537 + MLT1D LTR MaLR 1 491 -14 547 191 0 0 chr11 107117160 107117249 -43666304 - FLAM_A SINE Alu -44 98 10 243 0 0 0 chr11 107117257 107117284 -43666269 + (TA)n Simple_repeat Simple_repeat 2 28 0 423 149 0 0 chr11 107117469 107117543 -43666010 + (CA)n Simple_repeat Simple_repeat 1 74 0 1088 316 61 57 chr11 107117683 107118459 -43665094 - ERVL LTR ERVL -3091 2673 1895 616 323 10 5 chr11 107118695 107118887 -43664666 - MIR SINE MIR -21 241 49 595 306 13 31 chr11 107118933 107119162 -43664391 - ERVL LTR ERVL -4685 1079 855 947 242 124 28 chr11 107119194 107119837 -43663716 + LTR50 LTR ERVL 1 792 -3 367 367 6 0 chr11 107120001 107120159 -43663394 - ERVL LTR ERVL -5173 591 433 390 309 101 12 chr11 107120895 107121063 -43662490 + MIR SINE MIR 10 192 -70 1111 233 47 80 chr11 107123820 107123856 -43659697 - MER110A LTR ERV1 -34 434 398 5275 85 6 1 chr11 107123856 107124541 -43659012 + LTR12 LTR ERV1 1 688 0 1111 233 47 80 chr11 107124541 107124929 -43658624 - MER110A LTR ERV1 -70 398 24 408 284 21 35 chr11 107125376 107125517 -43658036 + L2 LINE L2 3175 3313 0 353 341 122 21 chr11 107125639 107125976 -43657577 + MLT1K LTR MaLR 171 541 -47 23 0 0 0 chr11 107125995 107126018 -43657535 + AT_rich Low_complexity Low_complexity 1 23 0 1764 255 55 75 chr11 107127810 107128559 -43654994 - MER21B LTR ERV1 -124 739 6 810 275 68 56 chr11 107131103 107131604 -43651949 + MER20B DNA MER1_type 35 541 -242 17733 178 30 32 chr11 107131776 107136723 -43646830 + L1MA2 LINE L1 57 4565 -3158 186 43 0 0 chr11 107136723 107136746 -43646807 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 17733 178 30 32 chr11 107136746 107139261 -43644292 + L1MA2 LINE L1 4565 7083 -640 311 113 19 0 chr11 107139269 107139322 -43644231 + A-rich Low_complexity Low_complexity 4 57 0 3613 140 17 11 chr11 107139322 107139971 -43643582 + L1MA2 LINE L1 7071 7723 0 738 235 36 0 chr11 107140225 107140421 -43643132 - MER3 DNA MER1_type -2 207 5 575 226 0 0 chr11 107140498 107140622 -43642931 - MER3 DNA MER1_type 0 2362 2239 413 233 117 0 chr11 107140627 107140747 -43642806 - MER3 DNA MER1_type -41 168 35 * 676 226 47 26 chr11 107140733 107140923 -43642630 + LTR16A1 LTR ERVL 264 457 0 383 231 81 38 chr11 107140930 107141090 -43642463 + MER20B DNA MER1_type 616 782 -1 30 27 0 0 chr11 107141186 107141223 -43642330 + AT_rich Low_complexity Low_complexity 1 37 0 210 273 80 23 chr11 107141714 107141802 -43641751 + MIR SINE MIR 98 190 -72 1314 155 78 0 chr11 107143025 107143257 -43640296 - L1PA11 LINE L1 0 6174 5925 180 0 0 0 chr11 107143257 107143277 -43640276 + (T)n Simple_repeat Simple_repeat 1 20 0 2231 99 7 3 chr11 107143409 107143713 -43639840 - AluSp SINE Alu -8 305 1 3502 100 0 0 chr11 107143714 107144193 -43639360 - L1PA11 LINE L1 -237 5937 5459 221 283 0 0 chr11 107144213 107144266 -43639287 - MIR SINE MIR -42 220 168 517 284 59 87 chr11 107144343 107144698 -43638855 + L2 LINE L2 2969 3313 0 22 0 0 0 chr11 107145727 107145749 -43637804 + AT_rich Low_complexity Low_complexity 1 22 0 181 347 56 0 chr11 107147657 107147729 -43635824 + L3 LINE CR1 999 1074 -503 2448 24 0 3 chr11 107148979 107149269 -43634284 + L1PA2 LINE L1 5864 6152 -3 1239 212 7 39 chr11 107149295 107149578 -43633975 + MLT1D LTR MaLR 232 505 0 445 289 7 37 chr11 107150105 107150387 -43633166 - MLT1I LTR MaLR -1 408 65 207 0 0 0 chr11 107152298 107152321 -43631232 + (TG)n Simple_repeat Simple_repeat 2 24 0 343 330 120 42 chr11 107152706 107153015 -43630538 - L1MC4 LINE L1 -147 7895 7563 2025 189 3 3 chr11 107153015 107153396 -43630157 + L1PA16 LINE L1 5781 6161 -5 44059 36 5 1 chr11 107153444 107159561 -43623992 - L1PA3 LINE L1 -2 6153 13 1501 250 112 90 chr11 107159581 107161072 -43622481 - L1MC4 LINE L1 -356 7532 5944 2012 156 0 7 chr11 107161072 107161379 -43622174 - AluSx SINE Alu -7 305 1 1501 250 112 90 chr11 107161379 107161399 -43622154 - L1MC4 LINE L1 -1944 5944 5926 1127 165 0 0 chr11 107161419 107161589 -43621964 - AluJb SINE Alu -5 307 138 1354 274 32 19 chr11 107161590 107162064 -43621489 - L1MC4 LINE L1 -1890 5918 5439 25 31 0 0 chr11 107162621 107162653 -43620900 + AT_rich Low_complexity Low_complexity 1 32 0 577 66 0 0 chr11 107162857 107162933 -43620620 + MADE1 DNA Mariner 5 80 0 909 218 64 8 chr11 107163060 107163326 -43620227 + MER114 LTR ERV 85 365 -283 374 250 108 7 chr11 107163363 107163511 -43620042 + MER114 LTR ERV 471 633 -15 5879 165 18 3 chr11 107163984 107165481 -43618072 + L1MA5A LINE L1 4774 6293 -4 17778 33 8 0 chr11 107166123 107169071 -43614482 + L1PA4 LINE L1 3185 6149 -6 264 288 0 0 chr11 107169602 107169661 -43613892 + MER94 DNA DNA 72 130 -4 1822 246 122 8 chr11 107169844 107170351 -43613202 + MLT1F1 LTR MaLR 1 565 -2 25 31 0 0 chr11 107172738 107172770 -43610783 + AT_rich Low_complexity Low_complexity 1 32 0 587 212 15 0 chr11 107172802 107172934 -43610619 - MER3 DNA MER1_type -42 167 34 12711 219 36 20 chr11 107172934 107175048 -43608505 + L1MA4A LINE L1 155 2233 -4772 1820 210 51 24 chr11 107175048 107175463 -43608090 - MSTB LTR MaLR 0 426 1 12711 219 36 20 chr11 107175463 107179914 -43603639 + L1MA4A LINE L1 2233 6999 -6 524 147 43 0 chr11 107179914 107180028 -43603525 + L1MA4A LINE L1 6884 7004 -1 1742 304 65 20 chr11 107180099 107181518 -43602035 + L1ME3A LINE L1 2670 4152 -1994 308 297 115 42 chr11 107181554 107181840 -43601713 - L1MCc LINE L1 -6106 317 11 22056 172 18 9 chr11 107181961 107187152 -43596401 - L1PA11 LINE L1 0 7612 2380 3001 244 48 23 chr11 107187187 107187977 -43595576 - L1PA11 LINE L1 -6765 816 7 493 258 0 0 chr11 107188007 107188104 -43595449 - MER5A DNA MER1_type -83 106 10 570 228 0 27 chr11 107188109 107188258 -43595295 + L1ME3A LINE L1 5390 5534 -630 578 273 158 0 chr11 107188268 107188528 -43595025 + L1ME3A LINE L1 5680 5980 -190 1600 148 0 8 chr11 107188656 107188893 -43594660 - AluSx SINE Alu -77 235 1 719 205 100 0 chr11 107188893 107189083 -43594470 + Charlie4 DNA MER1_type 1739 1947 -14 269 159 0 0 chr11 107189090 107189134 -43594419 - MLT1G1 LTR MaLR 0 595 552 22 80 0 0 chr11 107189299 107189349 -43594204 + AT_rich Low_complexity Low_complexity 1 50 0 5991 131 98 67 chr11 107189701 107190947 -43592606 + pTR5 LTR ERV1 741 2025 -413 363 214 31 20 chr11 107190947 107191045 -43592508 + LTR30 LTR ERV1 544 642 -80 1434 121 5 9 chr11 107191047 107191270 -43592283 + pTR5 LTR ERV1 171 392 -2046 287 291 64 18 chr11 107191858 107191968 -43591585 + L2 LINE L2 3198 3312 -1 26 0 0 0 chr11 107192510 107192536 -43591017 + AT_rich Low_complexity Low_complexity 1 26 0 191 277 43 32 chr11 107193195 107193289 -43590264 - MIR SINE MIR -2 260 166 522 330 105 17 chr11 107193295 107193589 -43589964 + MLT1J2 LTR MaLR 70 389 -61 399 238 90 16 chr11 107193657 107193779 -43589774 - MIR SINE MIR -106 156 26 423 282 27 0 chr11 107194430 107194540 -43589013 - MER81 DNA DNA 0 114 2 235 341 43 85 chr11 107194697 107194861 -43588692 + L2 LINE L2 2903 3059 -213 194 310 40 10 chr11 107195426 107195526 -43588027 + MIR3 SINE MIR 85 187 -21 2578 26 3 7 chr11 107195991 107196293 -43587260 + AluY SINE Alu 2 302 -9 12801 187 23 16 chr11 107196313 107199845 -43583708 - L1PA15-16 LINE L1 -3417 3432 7 180 0 0 0 chr11 107199845 107199865 -43583688 + (CAA)n Simple_repeat Simple_repeat 2 21 0 247 269 65 11 chr11 107199957 107200050 -43583503 - MIR SINE MIR -41 221 124 1947 134 59 0 chr11 107201227 107201517 -43582036 + AluSx SINE Alu 1 307 -5 225 308 210 7 chr11 107202007 107202150 -43581403 + L2 LINE L2 2568 2739 -575 193 318 47 35 chr11 107202839 107202924 -43580629 - MIR SINE MIR -142 120 35 * 366 321 43 37 chr11 107202904 107203091 -43580462 + MIR SINE MIR 49 236 -26 192 289 0 0 chr11 107203106 107203144 -43580409 - L2 LINE L2 -21 3251 3214 1357 194 69 63 chr11 107204164 107204548 -43579005 - MLT1B LTR MaLR -5 500 3 470 277 191 14 chr11 107204594 107204814 -43578739 - MIR SINE MIR -2 260 2 317 244 58 0 chr11 107204955 107205041 -43578512 + MIR SINE MIR 55 145 -63 25 51 0 0 chr11 107205954 107205993 -43577560 + AT_rich Low_complexity Low_complexity 1 39 0 408 186 69 10 chr11 107206242 107206344 -43577209 + L1MA9 LINE L1 5932 6039 -273 1459 120 15 34 chr11 107206492 107206759 -43576794 + L1MA9 LINE L1 6046 6307 -5 271 23 45 23 chr11 107207697 107207741 -43575812 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 3657 51 2 0 chr11 107208476 107208945 -43574608 - L1PA2 LINE L1 -1 6154 5685 25 31 0 0 chr11 107209452 107209484 -43574069 + AT_rich Low_complexity Low_complexity 1 32 0 312 246 90 37 chr11 107209695 107209829 -43573724 + L1MC4 LINE L1 7902 8042 0 208 255 20 10 chr11 107209840 107209942 -43573611 + GA-rich Low_complexity Low_complexity 4 106 0 39 0 0 0 chr11 107210798 107210837 -43572716 + AT_rich Low_complexity Low_complexity 1 39 0 248 329 97 19 chr11 107211650 107211805 -43571748 + MIR3 SINE MIR 37 203 -5 319 268 39 65 chr11 107211809 107212040 -43571513 - L1ME4a LINE L1 -6 6115 5891 313 262 96 59 chr11 107212021 107212208 -43571345 - L1ME4a LINE L1 -157 5964 5771 * 330 26 0 0 chr11 107212455 107212494 -43571059 + (TG)n Simple_repeat Simple_repeat 2 40 0 2392 64 0 0 chr11 107212494 107212777 -43570776 - AluY SINE Alu -28 283 1 1061 258 84 39 chr11 107212867 107213345 -43570208 + LTR40b LTR ERVL 3 460 -2 441 0 0 0 chr11 107213757 107213806 -43569747 + (T)n Simple_repeat Simple_repeat 1 49 0 46 0 0 0 chr11 107213818 107213864 -43569689 + GC_rich Low_complexity Low_complexity 1 46 0 317 244 58 0 chr11 107214499 107214585 -43568968 - MIR SINE MIR -63 145 55 470 277 191 14 chr11 107214726 107214946 -43568607 + MIR SINE MIR 2 260 -2 1329 194 69 65 chr11 107214992 107215377 -43568176 + MLT1B LTR MaLR 3 500 -5 192 289 0 0 chr11 107216401 107216439 -43567114 + L2 LINE L2 3214 3251 -21 366 321 43 37 chr11 107216454 107216641 -43566912 - MIR SINE MIR -26 236 49 193 318 47 35 chr11 107216621 107216706 -43566847 + MIR SINE MIR 35 120 -142 * 226 315 201 7 chr11 107217399 107217548 -43566005 - L2 LINE L2 -575 2739 2562 1921 134 59 0 chr11 107218032 107218322 -43565231 - AluSx SINE Alu -5 307 1 254 269 65 11 chr11 107219499 107219592 -43563961 + MIR SINE MIR 124 221 -41 180 0 0 0 chr11 107219684 107219704 -43563849 + (TTG)n Simple_repeat Simple_repeat 2 21 0 12767 205 29 19 chr11 107219704 107223256 -43560297 + L1PA15-16 LINE L1 7 3494 -3355 2172 82 6 50 chr11 107223256 107223573 -43559980 - AluY SINE Alu -8 303 1 12767 205 29 19 chr11 107223573 107224786 -43558767 + L1PA15-16 LINE L1 3494 4693 -2156 7455 30 4 0 chr11 107224786 107225759 -43557794 - L1PA4 LINE L1 -2 6153 5177 3567 51 25 4 chr11 107225759 107226231 -43557322 - L1P LINE L1 -3369 2777 2296 1402 178 39 62 chr11 107226232 107226569 -43556984 + MLT1B LTR MaLR 1 329 -61 228 185 0 0 chr11 107228945 107228999 -43554554 + T-rich Low_complexity Low_complexity 1 54 0 1982 8 0 13 chr11 107229003 107229237 -43554316 - L1PA2 LINE L1 -4 6151 5921 23 33 0 0 chr11 107229363 107229393 -43554160 + AT_rich Low_complexity Low_complexity 1 30 0 198 359 120 17 chr11 107230171 107230288 -43553265 + L2 LINE L2 3137 3265 -7 186 289 79 13 chr11 107230447 107230523 -43553030 + MIR SINE MIR 67 147 -115 244 289 53 0 chr11 107231027 107231103 -43552450 + MIR SINE MIR 160 239 -23 503 291 8 0 chr11 107231270 107231397 -43552156 - MIR SINE MIR -112 150 23 1057 236 10 0 chr11 107231400 107231599 -43551954 - MER58A DNA MER1_type -17 207 7 1485 276 77 33 chr11 107232805 107233413 -43550140 - MLT1E2 LTR MaLR 0 626 7 1080 205 24 9 chr11 107233451 107233661 -43549892 + MER58A DNA MER1_type 12 224 0 2180 109 7 0 chr11 107234478 107234782 -43548771 + AluSq SINE Alu 1 306 -7 238 427 36 0 chr11 107235842 107235952 -43547601 + L2 LINE L2 3139 3252 -20 499 332 19 15 chr11 107235953 107236212 -43547341 + MIR SINE MIR 1 260 -2 35 41 0 0 chr11 107237988 107238037 -43545516 + AT_rich Low_complexity Low_complexity 1 49 0 515 208 30 99 chr11 107238149 107238351 -43545202 + L1M4 LINE L1 4421 4608 -1538 21 0 0 0 chr11 107238417 107238438 -43545115 + AT_rich Low_complexity Low_complexity 1 21 0 1864 284 127 64 chr11 107238477 107238615 -43544938 - L2 LINE L2 0 3313 3185 2013 136 3 0 chr11 107238615 107238910 -43544643 - AluSx SINE Alu -16 296 1 1864 284 127 64 chr11 107238910 107239069 -43544484 - L2 LINE L2 -128 3185 3037 1240 124 15 0 chr11 107239069 107239270 -43544283 - L1MA2 LINE L1 0 6304 6101 1864 284 127 64 chr11 107239270 107240295 -43543258 - L2 LINE L2 -276 3037 1899 1964 161 127 11 chr11 107240320 107240754 -43542799 - MER31A LTR ERV1 0 543 1 228 373 40 69 chr11 107241254 107241501 -43542052 - L2 LINE L2 -32 3240 3001 487 327 15 39 chr11 107242722 107242927 -43540626 + MIR SINE MIR 33 232 -30 1447 191 36 55 chr11 107243232 107243593 -43539960 + L1 LINE L1 3856 4209 -1937 192 40 0 0 chr11 107243623 107243648 -43539905 + (TG)n Simple_repeat Simple_repeat 2 26 0 1188 37 0 0 chr11 107243809 107243943 -43539610 + AluY SINE Alu 1 134 -177 2207 86 3 3 chr11 107243943 107244246 -43539307 + AluY SINE Alu 1 303 -8 239 362 36 0 chr11 107244730 107244868 -43538685 - L1MC/D LINE L1 -2277 5531 5389 1508 210 82 53 chr11 107244926 107245417 -43538136 - MLT1D LTR MaLR 0 505 1 304 376 17 28 chr11 107245553 107245731 -43537822 + MIR SINE MIR 1 176 -86 215 267 25 124 chr11 107245795 107245956 -43537597 - L2 LINE L2 -4 3309 3165 1760 208 0 59 chr11 107245977 107246381 -43537172 + MLT1B LTR MaLR 1 380 -10 189 283 17 0 chr11 107246389 107246449 -43537104 - L2 LINE L2 -157 3156 3096 1887 151 13 0 chr11 107247096 107247394 -43536159 - AluJo SINE Alu -10 302 1 241 315 19 56 chr11 107247724 107247832 -43535721 - L3 LINE CR1 -106 1471 1368 281 180 49 0 chr11 107247858 107247919 -43535634 - L1MC3 LINE L1 -21 7764 7701 450 257 0 18 chr11 107247920 107248029 -43535524 + MER31B LTR ERV1 1 107 -359 6487 203 58 45 chr11 107248052 107250149 -43533404 - L1MC3 LINE L1 -744 5402 4909 1641 250 68 49 chr11 107250163 107250588 -43532965 - L1MC3 LINE L1 -2769 3377 2961 252 100 0 0 chr11 107250588 107250628 -43532925 + (TA)n Simple_repeat Simple_repeat 2 41 0 1641 250 68 49 chr11 107250628 107251080 -43532473 - L1MC3 LINE L1 -3185 2961 2461 5474 159 34 14 chr11 107251080 107252465 -43531088 - L1MA6 LINE L1 0 6300 2442 962 47 0 115 chr11 107252465 107252613 -43530940 - AluY SINE Alu -180 131 1 9904 194 22 5 chr11 107252613 107254815 -43528738 - L1 LINE L1 -776 6789 4494 2196 161 2 7 chr11 107254812 107255216 -43528337 - L1 LINE L1 -1536 6029 5628 * 243 83 0 0 chr11 107255273 107255309 -43528244 - L1 LINE L1 -4226 3339 3304 * 16924 208 63 9 chr11 107255308 107256498 -43527055 - L1 LINE L1 -3064 4501 3376 7035 56 2 0 chr11 107256498 107257793 -43525760 + L1PA7 LINE L1 4835 6152 -2 16924 208 63 9 chr11 107257793 107260849 -43522704 - L1 LINE L1 -4189 3376 22 2249 226 31 28 chr11 107260852 107261600 -43521953 - L1MCa LINE L1 -2629 3935 3186 3727 152 1 35 chr11 107261604 107262267 -43521286 - L1PA14 LINE L1 0 6161 5521 2406 250 52 39 chr11 107262267 107263789 -43519764 - L1 LINE L1 -3680 2670 1172 203 0 37 0 chr11 107263789 107263816 -43519737 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2406 250 52 39 chr11 107263816 107263935 -43519618 - L1 LINE L1 -5178 1172 1056 342 143 0 0 chr11 107263958 107264014 -43519539 + L1MCa LINE L1 2146 2201 -4225 527 334 60 36 chr11 107264100 107264516 -43519037 - L1 LINE L1 -5302 979 554 451 239 64 5 chr11 107264700 107264888 -43518665 - L1MCa LINE L1 -3685 2665 2467 431 264 36 7 chr11 107264880 107265020 -43518533 - L1MCa LINE L1 -5333 1017 874 * 7196 18 5 0 chr11 107265017 107265847 -43517706 - L1PA4 LINE L1 -2 6153 5320 250 88 0 0 chr11 107265848 107265882 -43517671 + L1P LINE L1 3222 3255 -2891 * 2915 271 40 46 chr11 107265877 107266980 -43516573 - L1MCa LINE L1 -4949 882 -213 197 367 51 0 chr11 107267003 107267082 -43516471 - L3 LINE CR1 -202 1375 1293 346 319 103 14 chr11 107267192 107267361 -43516192 - MIR SINE MIR -67 141 3 1990 236 18 55 chr11 107267462 107268046 -43515507 - MER74B LTR ERVL 0 622 1 2322 96 0 0 chr11 107268910 107269203 -43514350 - AluSc SINE Alu -16 293 1 230 308 107 53 chr11 107270415 107270584 -43512969 + HAL1 LINE L1 40 217 -2290 300 300 67 88 chr11 107270738 107270978 -43512575 + HAL1 LINE L1 1170 1404 -1103 521 241 117 43 chr11 107271043 107271367 -43512186 + HAL1 LINE L1 1400 1747 -760 267 31 0 0 chr11 107272202 107272234 -43511319 + (TC)n Simple_repeat Simple_repeat 1 32 0 2054 130 3 0 chr11 107273098 107273390 -43510163 + AluSx SINE Alu 6 298 -14 228 286 71 0 chr11 107273500 107273584 -43509969 + MIR SINE MIR 171 260 -2 3240 116 4 0 chr11 107273888 107274353 -43509200 - L1PA15 LINE L1 -23 6142 5676 2397 100 0 0 chr11 107274393 107274702 -43508851 - AluSc SINE Alu 0 309 1 326 287 29 29 chr11 107274901 107275037 -43508516 + L1ME2 LINE L1 6029 6164 0 435 344 40 36 chr11 107276590 107276840 -43506713 - MIR SINE MIR -5 257 7 309 189 30 15 chr11 107277669 107277801 -43505752 + (TA)n Simple_repeat Simple_repeat 2 135 0 223 267 40 27 chr11 107278987 107279062 -43504491 + MIR SINE MIR 62 137 -71 2164 86 4 4 chr11 107279290 107279593 -43503960 + AluY SINE Alu 2 304 0 3056 155 36 77 chr11 107280929 107281601 -43501952 - MER73 LTR ERVL 0 644 1 395 257 150 48 chr11 107285104 107285291 -43498262 + MIR SINE MIR 3 208 -54 212 284 0 34 chr11 107285676 107285764 -43497789 + CT-rich Low_complexity Low_complexity 3 87 0 246 225 42 28 chr11 107285934 107286005 -43497548 + L2 LINE L2 3197 3268 -4 211 278 0 0 chr11 107286648 107286702 -43496851 - MIR SINE MIR -6 256 203 1466 283 133 46 chr11 107288103 107289023 -43494530 - L2 LINE L2 -66 3247 2261 891 141 26 0 chr11 107289040 107289196 -43494357 + L1MA10 LINE L1 6171 6330 -4 2041 120 27 3 chr11 107289491 107289791 -43493762 + AluSc SINE Alu 1 307 -2 1964 141 7 10 chr11 107289916 107290222 -43493331 - AluSx SINE Alu -7 305 1 21 0 0 0 chr11 107290399 107290420 -43493133 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 107290902 107290923 -43492630 + AT_rich Low_complexity Low_complexity 1 21 0 265 339 24 54 chr11 107290964 107291132 -43492421 - MIR SINE MIR -57 205 43 408 286 68 8 chr11 107292623 107292756 -43490797 + MIR SINE MIR 47 187 -75 23 0 0 0 chr11 107293265 107293288 -43490265 + AT_rich Low_complexity Low_complexity 1 23 0 188 188 0 0 chr11 107294791 107294823 -43488730 + MIR SINE MIR 120 151 -111 2160 150 31 0 chr11 107295036 107295389 -43488164 - THE1B LTR MaLR 0 364 1 186 246 35 35 chr11 107296347 107296404 -43487149 + L2 LINE L2 3216 3272 0 376 264 72 16 chr11 107296600 107296725 -43486828 + MIR SINE MIR 118 249 -13 465 232 57 78 chr11 107297586 107297866 -43485687 - MLT2B1 LTR ERVL -78 442 93 3738 143 40 0 chr11 107297868 107298905 -43484648 + L1PA13 LINE L1 4986 6157 -6 232 98 235 0 chr11 107298916 107298967 -43484586 - MLT2B1 LTR ERVL -351 63 1 1504 184 19 101 chr11 107299087 107299512 -43484041 - MLT1B LTR MaLR 0 390 1 252 59 0 0 chr11 107300259 107300293 -43483260 + (TG)n Simple_repeat Simple_repeat 2 35 0 427 229 49 49 chr11 107300294 107300415 -43483138 - MER21B LTR ERV1 -86 777 657 1699 167 85 23 chr11 107300415 107300768 -43482785 - THE1C LTR MaLR 0 375 1 * 2743 256 61 8 chr11 107300768 107301387 -43482166 - MER21B LTR ERV1 -198 665 13 372 282 89 13 chr11 107301701 107301998 -43481555 - L1ME LINE L1 -582 5582 5264 2124 128 42 31 chr11 107302744 107303104 -43480449 + THE1B LTR MaLR 1 364 0 656 253 31 0 chr11 107304272 107304434 -43479119 - MER63A DNA MER1_type 0 210 44 21 0 0 0 chr11 107304441 107304462 -43479091 + AT_rich Low_complexity Low_complexity 1 21 0 272 302 47 12 chr11 107304486 107304572 -43478981 + LTR33 LTR ERVL 129 217 -304 621 143 0 45 chr11 107304762 107304874 -43478679 + AluSg/x SINE Alu 196 302 -10 226 184 20 0 chr11 107304874 107304923 -43478630 + LTR33 LTR ERVL 415 464 -57 257 170 0 0 chr11 107306060 107306107 -43477446 + MLT2B1 LTR ERVL 473 519 -1 1951 213 34 70 chr11 107306504 107307071 -43476482 + MLT2B3 LTR ERVL 1 546 -8 327 169 15 15 chr11 107307690 107307755 -43475798 + MER3 DNA MER1_type 46 110 -99 1162 129 0 3 chr11 107307760 107307986 -43475567 + AluSx SINE Alu 1 298 -14 289 247 157 14 chr11 107307998 107308221 -43475332 + MER3 DNA MER1_type 2369 2623 0 306 315 104 31 chr11 107308939 107309161 -43474392 + L1ME LINE L1 723 960 -5110 493 174 0 0 chr11 107309165 107309257 -43474296 - L1MA4 LINE L1 -108 6192 6101 609 128 0 34 chr11 107309285 107309402 -43474151 + L1MA4 LINE L1 6187 6299 -1 3740 180 44 92 chr11 107309563 107310480 -43473073 - MER21A LTR ERV1 -50 881 9 274 310 82 0 chr11 107310624 107310808 -43472745 + L1M1 LINE L1 2700 2898 -4667 * 2512 174 49 2 chr11 107310790 107311348 -43472205 - L1MC/D LINE L1 -573 5760 5176 2774 204 31 13 chr11 107311959 107312562 -43470991 - MER90 LTR ERV1 0 614 1 1575 301 102 20 chr11 107313408 107314354 -43469199 + L2 LINE L2 2270 3300 -13 267 31 0 0 chr11 107314354 107314386 -43469167 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 4105 151 1 9 chr11 107314684 107315371 -43468182 - L1PB3 LINE L1 0 6154 5473 * 6331 91 23 8 chr11 107315363 107316490 -43467063 - L1PA10 LINE L1 -16 6152 5006 23088 98 15 8 chr11 107316497 107321582 -43461971 - L1PB3 LINE L1 -1032 5114 11 5245 227 66 23 chr11 107321593 107326011 -43457542 - L1PBa LINE L1 -3169 3693 12 22 0 0 0 chr11 107326107 107326129 -43457424 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 107326274 107326298 -43457255 + AT_rich Low_complexity Low_complexity 1 24 0 417 297 151 17 chr11 107326696 107326928 -43456625 + LTR16A1 LTR ERVL 195 457 0 3993 183 13 9 chr11 107328427 107329120 -43454433 + MER44D DNA MER2_type 3 570 -35 1374 265 51 22 chr11 107330226 107330717 -43452836 - L1ME1 LINE L1 -5 6161 5657 464 273 165 79 chr11 107330717 107331123 -43452430 + LTR16B LTR ERVL 6 446 -18 582 330 52 30 chr11 107331207 107331571 -43451982 - HERV16 LTR ERVL -4135 861 490 550 359 101 10 chr11 107332079 107332486 -43451067 - LTR16A LTR ERVL -6 444 1 2649 237 87 48 chr11 107332492 107333917 -43449636 - L1ME1 LINE L1 -559 5607 4115 2088 209 28 68 chr11 107333917 107334554 -43448999 - LTR9 LTR ERV1 0 612 1 2649 237 87 48 chr11 107334554 107334658 -43448895 - L1ME1 LINE L1 -2051 4115 4017 27 0 0 0 chr11 107335562 107335589 -43447964 + AT_rich Low_complexity Low_complexity 1 27 0 270 374 8 0 chr11 107335619 107335742 -43447811 + L2 LINE L2 2503 2626 -688 622 178 14 7 chr11 107336011 107336157 -43447396 + L1MA9 LINE L1 6159 6305 -7 21 0 0 0 chr11 107336378 107336399 -43447154 + AT_rich Low_complexity Low_complexity 1 21 0 468 232 219 0 chr11 107336458 107336613 -43446940 + L1ME LINE L1 5511 5699 -422 216 0 0 0 chr11 107337077 107337101 -43446452 + (T)n Simple_repeat Simple_repeat 1 24 0 3213 129 71 70 chr11 107337277 107337736 -43445817 + L1MC1 LINE L1 5587 6049 -284 2417 68 3 0 chr11 107337736 107338044 -43445509 - AluY SINE Alu -2 309 1 3213 129 71 70 chr11 107338044 107338326 -43445227 + L1MC1 LINE L1 6049 6329 -4 254 290 181 0 chr11 107338800 107338955 -43444598 - HAL1 LINE L1 -839 1668 1486 * 610 228 40 0 chr11 107338953 107339102 -43444451 - L1MA10 LINE L1 0 6334 6180 313 234 70 93 chr11 107339456 107339670 -43443883 - L1M4 LINE L1 -5069 1473 1265 2012 142 0 3 chr11 107342797 107343099 -43440454 + AluSc SINE Alu 1 301 -8 1895 164 3 0 chr11 107343099 107343404 -43440149 + AluY SINE Alu 1 306 -5 212 296 52 43 chr11 107343555 107343670 -43439883 + MIR SINE MIR 1 116 -146 292 0 0 0 chr11 107343695 107343734 -43439819 - L1PA3 LINE L1 -3 6152 6114 237 233 33 0 chr11 107343756 107343816 -43439737 + MIR SINE MIR 145 206 -56 421 225 162 29 chr11 107344066 107344239 -43439314 + MER117 DNA MER1_type 2 197 0 209 204 20 0 chr11 107346022 107346071 -43437482 + (TGG)n Simple_repeat Simple_repeat 1 50 0 251 306 139 19 chr11 107346240 107346456 -43437097 - MIR SINE MIR 0 262 21 24 0 0 0 chr11 107346880 107346904 -43436649 + AT_rich Low_complexity Low_complexity 1 24 0 1767 65 0 9 chr11 107349354 107349584 -43433969 - L1PA8 LINE L1 -9 6163 5936 3334 186 40 48 chr11 107349622 107349985 -43433568 - L1PA16 LINE L1 -17 6149 5784 261 0 0 0 chr11 107349985 107350014 -43433539 + (TG)n Simple_repeat Simple_repeat 2 30 0 3334 186 40 48 chr11 107350014 107350450 -43433103 - L1PA16 LINE L1 -382 5784 5346 1541 57 0 0 chr11 107350450 107350642 -43432911 - L1PA5 LINE L1 -2 6152 5961 3334 186 40 48 chr11 107350642 107351125 -43432428 - L1PA16 LINE L1 -820 5346 4873 266 354 108 28 chr11 107351331 107351543 -43432010 + MIR SINE MIR 19 247 -15 608 225 64 114 chr11 107351577 107351937 -43431616 - MER2 DNA MER2_type -1 343 2 2806 3 0 0 chr11 107353703 107354005 -43429548 + AluYa5 SINE Alu 1 302 -9 12801 187 23 16 chr11 107354025 107357557 -43425996 - L1PA15-16 LINE L1 -3417 3432 7 180 0 0 0 chr11 107357557 107357577 -43425976 + (CAA)n Simple_repeat Simple_repeat 2 21 0 247 269 65 11 chr11 107357669 107357762 -43425791 - MIR SINE MIR -41 221 124 1985 133 58 0 chr11 107358939 107359232 -43424321 + AluSx SINE Alu 1 310 -2 225 308 210 7 chr11 107359722 107359865 -43423688 + L2 LINE L2 2568 2739 -575 183 318 47 35 chr11 107360558 107360643 -43422910 - MIR SINE MIR -142 120 35 * 366 321 43 37 chr11 107360623 107360810 -43422743 + MIR SINE MIR 49 236 -26 192 289 0 0 chr11 107360825 107360863 -43422690 - L2 LINE L2 -21 3251 3214 1297 200 58 64 chr11 107361887 107362259 -43421294 - MLT1B LTR MaLR -5 500 20 2884 3 0 0 chr11 107362732 107363043 -43420510 + AluYa5 SINE Alu 1 311 0 23 0 0 0 chr11 107363153 107363176 -43420377 + AT_rich Low_complexity Low_complexity 1 23 0 1361 226 86 117 chr11 107363684 107364256 -43419297 + MLT2B3 LTR ERVL 1 554 0 1503 146 123 0 chr11 107365221 107365474 -43418079 - AluJb SINE Alu -27 285 2 252 307 20 87 chr11 107365944 107366094 -43417459 + MIR SINE MIR 2 141 -121 220 333 42 0 chr11 107366147 107366243 -43417310 - MIR SINE MIR -29 233 134 294 121 17 35 chr11 107368672 107368730 -43414823 - THE1B LTR MaLR -303 61 5 428 316 51 30 chr11 107370691 107370928 -43412625 + ERVL LTR ERVL 2104 2345 -3309 927 234 38 88 chr11 107371918 107372336 -43411217 - MLT2C1 LTR ERVL 0 397 1 287 298 50 0 chr11 107373182 107373303 -43410250 + L2 LINE L2 2524 2650 -664 11196 238 77 38 chr11 107373915 107377244 -43406309 - L1PB4 LINE L1 0 7218 4023 2249 103 6 13 chr11 107377244 107377555 -43405998 + AluSc SINE Alu 1 309 0 11196 238 77 38 chr11 107377555 107381055 -43402498 - L1PB4 LINE L1 -3195 4023 83 351 344 49 72 chr11 107381350 107381740 -43401813 + L2 LINE L2 2892 3272 0 644 288 57 44 chr11 107381999 107382315 -43401238 + ERVL LTR ERVL 2063 2382 -3382 1045 148 28 0 chr11 107382411 107382587 -43400966 - L1PA16 LINE L1 -9 6157 5977 2256 351 63 23 chr11 107382739 107384247 -43399306 + ERVL LTR ERVL 2552 4119 -1645 586 316 92 47 chr11 107384257 107384830 -43398723 + ERVL LTR ERVL 4556 5154 -610 2444 70 0 13 chr11 107384963 107385278 -43398275 + AluY SINE Alu 1 311 0 423 313 136 69 chr11 107385651 107386086 -43397467 + LTR33 LTR ERVL 58 521 0 2179 110 3 7 chr11 107386358 107386659 -43396894 - AluSc SINE Alu -9 300 1 641 280 133 78 chr11 107388703 107389460 -43394093 + HAL1 LINE L1 75 789 -1718 396 0 0 0 chr11 107389460 107389504 -43394049 + (TG)n Simple_repeat Simple_repeat 2 45 0 641 280 133 78 chr11 107389504 107389644 -43393909 + HAL1 LINE L1 789 920 -1587 1997 126 0 0 chr11 107389644 107389921 -43393632 + AluSx SINE Alu 1 277 -35 198 0 0 0 chr11 107389921 107389943 -43393610 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 641 280 133 78 chr11 107389943 107390313 -43393240 + HAL1 LINE L1 919 1414 -1093 387 325 107 58 chr11 107390456 107390887 -43392666 + HAL1 LINE L1 1573 2024 -483 294 272 64 16 chr11 107390899 107391024 -43392529 - MIR SINE MIR -10 252 122 361 199 36 0 chr11 107391090 107391190 -43392363 + HAL1b LINE L1 821 2316 -191 351 217 48 90 chr11 107392098 107392264 -43391289 + HAL1 LINE L1 2335 2493 -14 35 63 0 0 chr11 107392456 107392519 -43391034 + AT_rich Low_complexity Low_complexity 1 63 0 1164 224 212 5 chr11 107392796 107393220 -43390333 - MER63 DNA MER1_type 0 1061 550 5701 97 14 3 chr11 107393275 107394033 -43389520 - L1PA13 LINE L1 -3 6160 5384 2035 125 7 3 chr11 107394033 107394330 -43389223 - AluSx SINE Alu -14 298 1 5701 97 14 3 chr11 107394330 107395026 -43388527 - L1PA13 LINE L1 -779 5384 4697 832 251 344 38 chr11 107395129 107395600 -43387953 - L1PA13 LINE L1 -5250 1537 923 * 955 183 10 56 chr11 107395591 107395788 -43387765 - L1PA13 LINE L1 -6261 526 339 * 6117 163 33 12 chr11 107395786 107397206 -43386347 - L1PA12 LINE L1 -5577 2004 1 1319 219 11 4 chr11 107397209 107397483 -43386070 - MLT1D LTR MaLR -227 278 3 411 289 147 19 chr11 107397507 107397718 -43385835 - L2 LINE L2 -1261 2053 1816 261 0 0 0 chr11 107398486 107398515 -43385038 + (A)n Simple_repeat Simple_repeat 1 29 0 921 235 70 50 chr11 107400460 107400818 -43382735 - MLT1A1 LTR MaLR 0 365 1 6176 230 87 44 chr11 107401433 107402840 -43380713 - L1MB8 LINE L1 0 6989 5644 2199 169 45 14 chr11 107402840 107403259 -43380294 - MSTB1 LTR MaLR 0 432 1 6176 230 87 44 chr11 107403259 107404225 -43379328 - L1MB8 LINE L1 -1345 5644 4721 270 95 0 0 chr11 107404225 107404267 -43379286 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 6176 230 87 44 chr11 107404267 107405342 -43378211 - L1MB8 LINE L1 -2268 4721 3395 944 195 11 0 chr11 107405353 107405527 -43378026 - L1MB8 LINE L1 -5564 1295 1120 3101 249 87 28 chr11 107405537 107406534 -43377019 - L1MB8 LINE L1 -5803 1056 1 195 139 0 0 chr11 107406839 107406875 -43376678 + (CA)n Simple_repeat Simple_repeat 1 36 0 25 75 0 0 chr11 107408066 107408119 -43375434 + AT_rich Low_complexity Low_complexity 1 53 0 2043 89 54 7 chr11 107408445 107408746 -43374807 + AluSx SINE Alu 1 314 0 381 321 63 39 chr11 107408756 107409264 -43374289 + HAL1b LINE L1 95 614 -734 21 0 0 0 chr11 107409816 107409837 -43373716 + AT_rich Low_complexity Low_complexity 1 21 0 4922 239 100 35 chr11 107409860 107412398 -43371155 + L1M2b LINE L1 1 3363 -3845 5719 93 43 2 chr11 107412400 107414164 -43369389 + L1PA13 LINE L1 4318 6152 -11 4971 219 93 1 chr11 107414175 107415535 -43368018 + L1M2b LINE L1 4328 5812 -1396 * 17506 186 59 12 chr11 107415533 107417153 -43366400 + L1M1 LINE L1 17 1559 -6006 213 39 0 0 chr11 107417153 107417179 -43366374 + (GA)n Simple_repeat Simple_repeat 2 27 0 17506 186 59 12 chr11 107417179 107421681 -43361872 + L1M1 LINE L1 1559 6445 -1120 251 98 314 0 chr11 107421678 107421729 -43361824 + L1M1 LINE L1 7096 7162 -561 * 21 0 0 0 chr11 107423181 107423202 -43360351 + AT_rich Low_complexity Low_complexity 1 21 0 388 313 153 6 chr11 107424064 107424227 -43359326 - MIR3 SINE MIR -6 202 16 1683 93 4 0 chr11 107424645 107424881 -43358672 - L1PA8 LINE L1 -5 6167 5931 5135 65 26 1 chr11 107424882 107425813 -43357740 + L1PA8 LINE L1 4992 5941 -231 25 0 0 0 chr11 107425865 107425890 -43357663 + AT_rich Low_complexity Low_complexity 1 25 0 335 363 7 7 chr11 107425998 107426133 -43357420 + L2 LINE L2 2926 3060 -212 23 68 0 0 chr11 107426862 107426906 -43356647 + AT_rich Low_complexity Low_complexity 1 44 0 3677 96 8 6 chr11 107427613 107428123 -43355430 + MER9 LTR ERVK 1 511 0 251 186 98 78 chr11 107428386 107428488 -43355065 - LTR47B LTR ERVL -60 383 280 428 340 40 43 chr11 107429188 107429514 -43354039 - PABL_B-int LTR ERV1 -599 6523 6199 301 311 67 53 chr11 107430716 107430999 -43352554 - HERV16 LTR ERVL -1282 4061 3775 401 211 154 0 chr11 107431087 107431191 -43352362 - L2 LINE L2 -1 3312 3193 1342 248 83 44 chr11 107431458 107431938 -43351615 + MLT1D LTR MaLR 7 505 0 378 304 56 16 chr11 107432160 107432382 -43351171 - L1 LINE L1 -2329 3817 3587 190 70 93 0 chr11 107432425 107432468 -43351085 + T-rich Low_complexity Low_complexity 3 49 0 634 312 64 17 chr11 107433034 107433268 -43350285 + MIR SINE MIR 18 262 0 32 67 0 0 chr11 107434185 107434245 -43349308 + AT_rich Low_complexity Low_complexity 1 60 0 184 151 19 19 chr11 107434434 107434487 -43349066 + GA-rich Low_complexity Low_complexity 3 55 0 240 35 0 0 chr11 107434604 107434633 -43348920 + (TA)n Simple_repeat Simple_repeat 1 29 0 393 222 101 10 chr11 107434786 107434885 -43348668 + MIR SINE MIR 84 191 -71 25 51 0 0 chr11 107434952 107434991 -43348562 + AT_rich Low_complexity Low_complexity 1 39 0 292 242 48 24 chr11 107434999 107435123 -43348430 + MIR SINE MIR 134 260 -2 33 66 0 0 chr11 107435965 107436026 -43347527 + AT_rich Low_complexity Low_complexity 1 61 0 4571 49 0 0 chr11 107436205 107436777 -43346776 + L1PA5 LINE L1 2517 3088 -3058 992 40 40 0 chr11 107436774 107436900 -43346653 - L1P2 LINE L1 -548 5606 5476 * 7326 36 21 0 chr11 107436920 107438000 -43345553 - L1PA4 LINE L1 -7 6148 5062 * 15207 45 6 1 chr11 107437997 107440661 -43342892 + L1PA5 LINE L1 3489 6158 0 2074 225 35 18 chr11 107442007 107442461 -43341092 + MER70A LTR ERVL 7 468 -4 418 345 46 6 chr11 107442925 107443099 -43340454 - HERV16 LTR ERVL -4815 181 1 706 270 81 42 chr11 107443099 107443406 -43340147 - LTR16A1 LTR ERVL 0 457 139 861 348 89 30 chr11 107443592 107444708 -43338845 - HERVL LTR ERVL -1198 4566 3337 663 314 48 28 chr11 107444759 107445113 -43338440 - HERVL LTR ERVL -2777 2219 1859 186 171 0 0 chr11 107446197 107446238 -43337315 + (TA)n Simple_repeat Simple_repeat 2 42 0 1007 223 22 4 chr11 107446333 107446602 -43336951 + L1ME2 LINE L1 5258 5531 -631 453 271 19 26 chr11 107446636 107446791 -43336762 + LTR41 LTR ERVL 1 154 -619 536 212 25 86 chr11 107446857 107447055 -43336498 + L1ME2 LINE L1 5978 6163 -1 237 337 66 15 chr11 107448204 107448325 -43335228 - MIR SINE MIR -78 130 2 21 82 0 0 chr11 107449324 107449373 -43334180 + AT_rich Low_complexity Low_complexity 1 49 0 895 305 17 32 chr11 107449734 107450082 -43333471 - L2 LINE L2 -18 3295 2953 1166 319 145 9 chr11 107450163 107450799 -43332754 - L2 LINE L2 -458 2856 2135 226 236 18 0 chr11 107450799 107450854 -43332699 + GA-rich Low_complexity Low_complexity 2 57 0 1026 191 82 0 chr11 107450908 107451128 -43332425 - MLT1D LTR MaLR 0 505 268 10676 183 21 7 chr11 107451130 107454142 -43329411 - L1PA13 LINE L1 -1 6162 3122 2631 86 58 23 chr11 107454144 107454541 -43329012 + MLT2A1 LTR ERVL 1 411 -33 258 73 109 0 chr11 107454541 107454651 -43328902 + (TA)n Simple_repeat Simple_repeat 1 122 0 306 123 70 0 chr11 107454652 107454709 -43328844 + MLT2A1 LTR ERVL 460 520 0 3310 75 16 0 chr11 107454709 107455147 -43328406 + HERVL-A1-A1 LTR ERVL 1 445 -5209 8800 87 19 0 chr11 107455148 107456329 -43327224 + HERVL-A1-A1 LTR ERVL 927 2130 -3524 * 24996 84 9 8 chr11 107456324 107459647 -43323906 + HERVL-A1-A1 LTR ERVL 2329 5654 0 2708 113 20 5 chr11 107459647 107460045 -43323508 + MLT2A1 LTR ERVL 1 404 -40 287 185 0 0 chr11 107460083 107460137 -43323416 + MLT2A1 LTR ERVL 464 517 -3 8265 220 27 18 chr11 107460144 107462214 -43321339 - L1PA13 LINE L1 -3030 3116 1028 2244 313 135 14 chr11 107462369 107463509 -43320044 - L2 LINE L2 -1833 1481 204 2167 91 30 10 chr11 107463509 107463807 -43319746 + AluY SINE Alu 1 304 -7 607 215 7 47 chr11 107464307 107464456 -43319097 + FLAM_C SINE Alu 1 143 0 323 284 45 0 chr11 107464552 107464640 -43318913 + MIR SINE MIR 101 192 -70 554 311 64 0 chr11 107465923 107466158 -43317395 - LTR33A LTR ERVL -8 515 266 266 243 93 65 chr11 107466251 107466358 -43317195 - LTR33A LTR ERVL -311 212 103 413 313 157 32 chr11 107466448 107466825 -43316728 - MLT1J2 LTR MaLR -26 424 1 417 327 38 6 chr11 107467261 107467420 -43316133 - MIR3 SINE MIR -13 195 32 380 346 66 6 chr11 107468334 107468516 -43315037 - L3 LINE CR1 -35 1542 1350 1948 176 111 10 chr11 107468631 107469018 -43314535 - MSTB LTR MaLR 0 426 1 552 319 37 69 chr11 107469209 107469644 -43313909 + LTR16B LTR ERVL 37 457 -7 2366 91 0 0 chr11 107470550 107470846 -43312707 + AluSq SINE Alu 1 296 -17 553 155 52 0 chr11 107470908 107471024 -43312529 + AluJb SINE Alu 188 309 -3 218 193 181 24 chr11 107472828 107472911 -43310642 + MIR SINE MIR 100 195 -67 2308 83 0 6 chr11 107473407 107473720 -43309833 - AluY SINE Alu 0 311 1 539 333 63 5 chr11 107474882 107475071 -43308482 + MIR SINE MIR 43 242 -20 306 365 39 19 chr11 107475712 107475868 -43307685 + MIR3 SINE MIR 19 177 -31 5324 155 41 24 chr11 107478274 107479878 -43303675 + L1MA5A LINE L1 4664 6293 -4 975 192 25 0 chr11 107480113 107480316 -43303237 + MER33 DNA MER1_type 2 209 -115 3523 179 10 3 chr11 107481562 107482259 -43301294 - L1P LINE L1 -864 5282 4581 5318 116 13 12 chr11 107482287 107483106 -43300447 + L1PA13 LINE L1 5344 6163 0 1194 197 78 30 chr11 107483205 107483605 -43299948 - MER39 LTR ERV1 0 707 218 486 266 59 76 chr11 107484429 107484666 -43298887 - MLT1I LTR MaLR 0 409 177 26 0 0 0 chr11 107485358 107485384 -43298169 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 107487239 107487261 -43296292 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr11 107487645 107487677 -43295876 + AT_rich Low_complexity Low_complexity 1 32 0 265 328 107 7 chr11 107488317 107488588 -43294965 + L1ME LINE L1 5551 5848 -273 300 396 48 5 chr11 107490029 107490216 -43293337 + MIR SINE MIR 34 228 -34 239 301 68 38 chr11 107490465 107490598 -43292955 + MIR SINE MIR 84 220 -42 813 244 47 0 chr11 107490880 107491073 -43292480 - MER63A DNA MER1_type -8 202 1 1617 186 57 57 chr11 107492213 107492616 -43290937 - MLT2D LTR ERVL -5 409 7 334 293 193 11 chr11 107493399 107493580 -43289973 + MIR SINE MIR 49 262 0 644 208 27 7 chr11 107493951 107494100 -43289453 + L1M4 LINE L1 102 253 -6289 440 212 186 0 chr11 107494443 107494655 -43288898 + L1M4 LINE L1 537 956 -5586 579 232 73 19 chr11 107494684 107494943 -43288610 + L1M4 LINE L1 1069 1341 -5201 * 750 272 116 19 chr11 107494936 107495462 -43288091 + L1M4 LINE L1 1550 2126 -4520 1006 280 42 42 chr11 107495523 107495877 -43287676 + L1MB8 LINE L1 8 361 -6669 1537 166 137 153 chr11 107495900 107496652 -43286901 + L1 LINE L1 4606 5345 -801 6673 197 73 7 chr11 107496665 107498049 -43285504 + L1MB8 LINE L1 488 1963 -5143 4804 219 128 19 chr11 107498076 107500623 -43282930 + L1PA13 LINE L1 1 2936 -3861 8787 190 23 15 chr11 107500623 107503342 -43280211 + L1PA13 LINE L1 4039 6796 -18 4134 137 111 13 chr11 107503416 107504275 -43279278 + L1MB8 LINE L1 2009 2951 -4155 3760 206 65 22 chr11 107504264 107506038 -43277515 + L1MB8 LINE L1 5270 7118 -20 * 204 40 0 0 chr11 107506145 107506170 -43277383 + (TG)n Simple_repeat Simple_repeat 2 26 0 22 56 0 0 chr11 107506487 107506523 -43277030 + AT_rich Low_complexity Low_complexity 1 36 0 387 0 0 0 chr11 107507149 107507192 -43276361 + (A)n Simple_repeat Simple_repeat 1 43 0 5998 178 16 3 chr11 107507201 107508354 -43275199 + L1P LINE L1 3521 4687 -1459 282 286 60 34 chr11 107508365 107508483 -43275070 - MIR SINE MIR -69 139 5 1790 106 88 4 chr11 107508507 107508780 -43274773 - AluSq SINE Alu -13 300 5 1284 252 31 18 chr11 107508922 107509307 -43274246 - MER63C DNA MER1_type -540 390 1 435 350 72 4 chr11 107509511 107509748 -43273805 + L2 LINE L2 2613 2865 -449 434 229 69 104 chr11 107509766 107509826 -43273727 + MER45A DNA AcHobo 37 98 -1483 613 198 8 0 chr11 107509826 107509947 -43273606 - FLAM_A SINE Alu -10 123 2 434 229 69 104 chr11 107509947 107510030 -43273523 + MER45A DNA AcHobo 98 175 -3 338 359 39 0 chr11 107510213 107510316 -43273237 + L2 LINE L2 3207 3313 0 205 349 23 83 chr11 107510544 107510614 -43272939 + MIR SINE MIR 27 87 -121 1987 152 51 28 chr11 107510614 107510970 -43272583 - THE1B LTR MaLR 0 364 1 205 349 23 83 chr11 107510970 107511031 -43272522 + MIR SINE MIR 87 150 -58 189 310 54 70 chr11 107511957 107512086 -43271467 - L2 LINE L2 -5 3267 3141 225 239 56 0 chr11 107512915 107512986 -43270567 - L1MEc LINE L1 -5292 1104 1030 1042 247 31 27 chr11 107513341 107513789 -43269764 + MER74A LTR ERVL 3 528 -30 2194 119 0 0 chr11 107514976 107515270 -43268283 + AluSx SINE Alu 1 294 -18 291 308 112 39 chr11 107515429 107515510 -43268043 - ERVL LTR ERVL -633 5131 5057 2036 133 6 51 chr11 107515510 107515863 -43267690 - MER1B DNA MER1_type 0 337 1 291 308 112 39 chr11 107515863 107516112 -43267441 - ERVL LTR ERVL -707 5057 4777 1083 323 54 22 chr11 107516176 107516768 -43266785 - ERVL LTR ERVL -1083 4681 4071 724 312 65 21 chr11 107516882 107517222 -43266331 - ERVL LTR ERVL -2086 3678 3324 557 335 50 18 chr11 107517926 107518263 -43265290 - ERVL LTR ERVL -2367 3287 2940 2389 191 25 21 chr11 107518294 107518855 -43264698 - L1MB4 LINE L1 -2 6414 5852 2059 217 113 9 chr11 107518859 107519876 -43263677 - L1MB4 LINE L1 -3414 2968 1749 2319 63 0 13 chr11 107520173 107520474 -43263079 + AluY SINE Alu 1 297 -14 342 324 80 40 chr11 107520676 107520975 -43262578 - ERVL LTR ERVL -4060 1704 1394 503 236 188 0 chr11 107521023 107521167 -43262386 - MER77 LTR ERV1 -220 385 215 13460 169 29 10 chr11 107521188 107523675 -43259878 - L1MA2 LINE L1 -1 7722 5092 2176 123 0 0 chr11 107523675 107523984 -43259569 - AluSg SINE Alu -1 309 1 13460 169 29 10 chr11 107523984 107526164 -43257389 - L1MA2 LINE L1 -2631 5092 2956 10884 205 44 6 chr11 107526158 107528331 -43255222 - L1MA2 LINE L1 -5294 2271 15 * 453 248 89 34 chr11 107528383 107528845 -43254708 + L1ME LINE L1 519 1105 -5006 273 350 21 0 chr11 107529002 107529099 -43254454 + MER101B LTR ERV1 205 303 -267 * 544 317 22 11 chr11 107529082 107529265 -43254288 + MER101 LTR ERV1 233 417 -57 237 108 0 0 chr11 107529371 107529408 -43254145 + (GGA)n Simple_repeat Simple_repeat 3 39 0 349 336 119 4 chr11 107529509 107529925 -43253628 + L1ME LINE L1 1180 1683 -4555 1704 156 3 7 chr11 107530206 107530514 -43253039 - AluJb SINE Alu 0 307 1 1523 176 79 0 chr11 107531447 107531725 -43251828 - AluJb SINE Alu -7 305 6 1992 167 0 0 chr11 107532013 107532325 -43251228 - AluSx SINE Alu 0 312 1 5282 133 42 6 chr11 107532537 107533456 -43250097 - L1PA15 LINE L1 -16 6149 5200 230 283 97 48 chr11 107533866 107534011 -43249542 - MIR SINE MIR 0 262 111 1078 250 107 30 chr11 107534399 107534763 -43248790 + MER76 LTR ERV 1 392 -296 375 322 25 0 chr11 107536763 107536881 -43246672 - L2 LINE L2 -457 2857 2737 6210 237 110 16 chr11 107536967 107537012 -43246541 + L1M3e LINE L1 153 192 -6914 1821 160 41 36 chr11 107537012 107537374 -43246179 - THE1B LTR MaLR 0 364 1 6210 237 110 16 chr11 107537374 107541970 -43241583 + L1M3e LINE L1 192 4939 -2167 5684 196 37 13 chr11 107542903 107545138 -43238415 - L1PA15 LINE L1 0 6165 3890 476 239 14 42 chr11 107545139 107545281 -43238272 - MER3 DNA MER1_type -71 138 1 244 240 13 0 chr11 107546247 107546322 -43237231 + (TA)n Simple_repeat Simple_repeat 1 76 0 204 153 0 108 chr11 107546337 107546448 -43237105 + (TA)n Simple_repeat Simple_repeat 1 99 0 580 263 93 82 chr11 107547036 107547587 -43235966 + L1MC5 LINE L1 6542 7109 -852 21 57 0 0 chr11 107547663 107547698 -43235855 + AT_rich Low_complexity Low_complexity 1 35 0 384 240 63 102 chr11 107547702 107547865 -43235688 + L1MC4 LINE L1 7723 7868 -174 297 0 0 0 chr11 107547865 107547898 -43235655 + (CA)n Simple_repeat Simple_repeat 2 34 0 384 240 63 102 chr11 107547898 107548067 -43235486 + L1MC4 LINE L1 7868 8042 0 442 252 54 37 chr11 107548190 107548432 -43235121 + L1MC5 LINE L1 7617 7862 -99 287 122 37 49 chr11 107549131 107549213 -43234340 + A-rich Low_complexity Low_complexity 3 83 0 4904 194 51 10 chr11 107549410 107550481 -43233072 - L1MC1 LINE L1 -6 6327 5214 2940 133 25 14 chr11 107550564 107551280 -43232273 + L1PA11 LINE L1 4877 5603 -565 1338 97 57 26 chr11 107551288 107551515 -43232038 + L1PA11 LINE L1 5941 6174 0 695 75 21 0 chr11 107551765 107551858 -43231695 + L1PA11 LINE L1 5509 5603 -571 1397 79 57 26 chr11 107551866 107552093 -43231460 + L1PA11 LINE L1 5941 6174 0 705 242 123 48 chr11 107552147 107552374 -43231179 + MLT2B1 LTR ERVL 219 462 -58 191 152 22 0 chr11 107552386 107552432 -43231121 + (TA)n Simple_repeat Simple_repeat 1 47 0 231 302 63 37 chr11 107552721 107552910 -43230643 - L2 LINE L2 -479 2835 2642 27 62 0 0 chr11 107552998 107553046 -43230507 + AT_rich Low_complexity Low_complexity 1 48 0 1456 190 42 0 chr11 107553214 107553503 -43230050 + AluJb SINE Alu 1 301 -11 2211 98 14 0 chr11 107553512 107553808 -43229745 + AluSq SINE Alu 2 301 -12 188 294 15 44 chr11 107555221 107555289 -43228264 - MIR SINE MIR -110 98 33 288 292 117 48 chr11 107556190 107556552 -43227001 + MLT1J2 LTR MaLR 1 393 -53 246 204 257 18 chr11 107556626 107556739 -43226814 - MIR SINE MIR -76 186 47 288 333 18 33 chr11 107556928 107557127 -43226426 + MLT1I LTR MaLR 70 249 -160 244 336 47 9 chr11 107558262 107558369 -43225184 + MIR SINE MIR 42 152 -56 216 318 24 12 chr11 107558668 107558753 -43224800 - MIR SINE MIR -128 134 49 265 249 123 0 chr11 107559250 107559371 -43224182 - L1MB8 LINE L1 -10 6156 6021 322 250 128 70 chr11 107559374 107559530 -43224023 + L1M4 LINE L1 5189 5353 -793 232 363 30 30 chr11 107559537 107559672 -43223881 - MIR SINE MIR -111 151 17 32 26 0 0 chr11 107560099 107560138 -43223415 + AT_rich Low_complexity Low_complexity 1 39 0 181 293 0 35 chr11 107560706 107560764 -43222789 - MIR SINE MIR -85 177 122 * 356 316 16 102 chr11 107560759 107561082 -43222471 + L2 LINE L2 2917 3211 -102 24 32 0 0 chr11 107561369 107561400 -43222153 + AT_rich Low_complexity Low_complexity 1 31 0 206 331 123 15 chr11 107561463 107561593 -43221960 + MIR3 SINE MIR 34 177 -31 23 0 0 0 chr11 107563332 107563355 -43220198 + AT_rich Low_complexity Low_complexity 1 23 0 265 351 63 31 chr11 107563416 107563607 -43219946 - MIR3 SINE MIR -59 203 2 428 256 22 0 chr11 107564858 107564948 -43218605 - MER81 DNA DNA -22 92 1 438 187 0 0 chr11 107565098 107565173 -43218380 - MER6B DNA MER2_type 0 210 136 * 516 171 86 0 chr11 107565162 107565267 -43218286 - MER6B DNA MER2_type -162 114 1 185 0 40 0 chr11 107565312 107565337 -43218216 + (TA)n Simple_repeat Simple_repeat 2 27 0 420 97 0 0 chr11 107565710 107565772 -43217781 + (CA)n Simple_repeat Simple_repeat 2 63 0 251 304 0 14 chr11 107566474 107566543 -43217010 + MIR SINE MIR 49 116 -92 14599 111 41 13 chr11 107567450 107570328 -43213225 + L1PA5 LINE L1 3179 6154 0 226 211 39 0 chr11 107570447 107570499 -43213054 + (CATA)n Simple_repeat Simple_repeat 2 55 0 21 0 0 0 chr11 107570623 107570644 -43212909 + AT_rich Low_complexity Low_complexity 1 21 0 192 152 0 0 chr11 107570984 107571017 -43212536 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 26 0 0 0 chr11 107571998 107572024 -43211529 + AT_rich Low_complexity Low_complexity 1 26 0 275 230 54 14 chr11 107572186 107572260 -43211293 + L2 LINE L2 3232 3308 -5 1710 324 147 29 chr11 107574697 107575884 -43207669 + L2 LINE L2 1637 2963 -351 180 318 45 45 chr11 107575855 107575943 -43207610 + L2 LINE L2 3225 3312 -1 * 1318 162 183 26 chr11 107576013 107576402 -43207151 + LTR7 LTR ERV1 1 450 0 208 245 61 0 chr11 107577736 107577785 -43205768 + MIR SINE MIR 129 180 -82 2621 161 4 28 chr11 107577786 107578245 -43205308 + LOR1a LTR ERV1 1 448 -49 1658 173 60 0 chr11 107579934 107580252 -43203301 - MER44D DNA MER2_type 0 609 3 263 299 34 7 chr11 107580464 107580611 -43202942 + L1ME2 LINE L1 4883 5033 -1113 1483 199 0 31 chr11 107580630 107580917 -43202636 + AluJo SINE Alu 3 280 -32 418 301 254 14 chr11 107581074 107581633 -43201920 + L1ME2 LINE L1 5260 5950 -214 293 317 134 84 chr11 107582155 107582476 -43201077 - L2 LINE L2 -747 2567 2204 1876 111 0 8 chr11 107582476 107582754 -43200799 - AluSg SINE Alu 0 305 30 293 317 134 84 chr11 107582754 107582989 -43200564 - L2 LINE L2 -1110 2204 1982 191 394 45 0 chr11 107583001 107583133 -43200420 - L2 LINE L2 -224 3048 2911 4014 19 2 2 chr11 107585416 107585939 -43197614 - L1PA3 LINE L1 -720 5435 4913 6119 27 0 0 chr11 107585939 107586645 -43196908 + L1PA3 LINE L1 5443 6155 0 207 266 31 16 chr11 107586649 107586713 -43196840 - MER5A DNA MER1_type -50 139 75 233 341 23 23 chr11 107588863 107588951 -43194602 + L2 LINE L2 2536 2623 -691 2112 233 141 22 chr11 107590303 107591010 -43192543 + MER52A LTR ERV1 1 864 -891 2408 188 30 8 chr11 107591054 107591522 -43192031 + MER52A LTR ERV1 1278 1755 0 351 307 90 33 chr11 107591629 107591841 -43191712 + LTR33 LTR ERVL 1 224 -297 1210 285 52 63 chr11 107591930 107591979 -43191574 - LTR16B LTR ERVL -2 462 414 2581 105 5 5 chr11 107591979 107592352 -43191201 + THE1C LTR MaLR 1 373 -2 9218 122 46 39 chr11 107592355 107593923 -43189630 + THE1C-int LTR MaLR 2 1580 0 2271 141 13 13 chr11 107593923 107594298 -43189255 + THE1C LTR MaLR 1 375 0 1210 285 52 63 chr11 107594298 107594703 -43188850 - LTR16B LTR ERVL -50 414 8 241 339 110 0 chr11 107595328 107595406 -43188147 - L2 LINE L2 0 3313 3218 279 0 0 0 chr11 107595406 107595437 -43188116 + (CA)n Simple_repeat Simple_repeat 2 32 0 241 339 110 0 chr11 107595437 107595467 -43188086 - L2 LINE L2 -95 3218 3193 571 283 155 15 chr11 107598055 107598462 -43185091 - L1M4 LINE L1 -2763 3383 2920 240 252 65 24 chr11 107599865 107599988 -43183565 - L1MC4 LINE L1 -43 7999 7872 1977 289 168 31 chr11 107600083 107601144 -43182409 + L1M3e LINE L1 1 1206 -5824 1023 242 22 32 chr11 107601145 107601422 -43182131 + L1M3e LINE L1 1749 2022 -5008 290 156 0 0 chr11 107601421 107601466 -43182087 + L1M3e LINE L1 2657 2701 -4406 * 235 156 22 0 chr11 107601466 107601511 -43182042 + MADE1 DNA Mariner 35 80 0 2747 260 25 15 chr11 107601519 107602445 -43181108 + L1M4 LINE L1 2292 3226 -4339 355 239 23 0 chr11 107602746 107602834 -43180719 + L1MA7 LINE L1 5938 6027 -264 868 168 23 0 chr11 107602844 107603017 -43180536 + L1MA8 LINE L1 6110 6286 -5 229 400 9 9 chr11 107603621 107603726 -43179827 + L2 LINE L2 3168 3272 0 438 293 106 35 chr11 107605182 107605636 -43177917 + L1M4 LINE L1 5334 5819 -1746 308 286 74 40 chr11 107606175 107606350 -43177203 + L1M4 LINE L1 5843 6023 -1542 443 327 138 11 chr11 107606350 107606784 -43176769 + L1MEc LINE L1 26 514 -5882 683 297 75 31 chr11 107606960 107607757 -43175796 + L1MEc LINE L1 511 1862 -4534 37 76 0 0 chr11 107607815 107607894 -43175659 + AT_rich Low_complexity Low_complexity 1 79 0 937 249 86 69 chr11 107608022 107608872 -43174681 + L1MEc LINE L1 1924 2816 -3399 913 184 56 5 chr11 107608880 107609142 -43174411 - L1M2 LINE L1 -749 5397 5156 4394 163 18 8 chr11 107609142 107609980 -43173573 + L1MA8 LINE L1 5440 6286 -5 294 233 72 17 chr11 107609981 107610161 -43173392 + L1MEc LINE L1 2808 2997 -3218 204 322 46 11 chr11 107611597 107611684 -43171869 - L2 LINE L2 -1 3312 3223 1708 327 87 18 chr11 107611692 107612436 -43171117 + L1PA15 LINE L1 2 797 -5990 1063 231 165 9 chr11 107612520 107612854 -43170699 + L1PA15 LINE L1 1301 1686 -5101 * 5917 241 32 11 chr11 107612852 107614521 -43169032 + L1PA15 LINE L1 2871 4573 -2224 4916 152 50 7 chr11 107614542 107615714 -43167839 + L1PA15 LINE L1 5595 6816 0 608 231 7 0 chr11 107616834 107616981 -43166572 - L1MA10 LINE L1 -11 6323 6176 297 362 100 21 chr11 107617339 107617618 -43165935 + L2 LINE L2 1318 1618 -1696 1802 161 0 41 chr11 107618271 107618587 -43164966 - AluSx SINE Alu -9 303 1 2141 113 0 3 chr11 107618970 107619262 -43164291 - AluSc SINE Alu -18 291 1 258 287 172 17 chr11 107619305 107619479 -43164074 + L2 LINE L2 2677 2877 -437 546 367 47 17 chr11 107619711 107620133 -43163420 + L2 LINE L2 2868 3302 -11 502 296 74 0 chr11 107621029 107621218 -43162335 + MIR SINE MIR 54 256 -6 331 318 109 28 chr11 107621552 107621763 -43161790 - HAL1 LINE L1 -591 1916 1689 261 353 17 0 chr11 107622421 107622537 -43161016 - MER5B DNA MER1_type -15 163 46 243 0 0 0 chr11 107623550 107623577 -43159976 + (T)n Simple_repeat Simple_repeat 1 27 0 31 26 0 0 chr11 107623681 107623719 -43159834 + AT_rich Low_complexity Low_complexity 1 38 0 243 0 0 0 chr11 107624591 107624618 -43158935 + (T)n Simple_repeat Simple_repeat 1 27 0 31 26 0 0 chr11 107624721 107624759 -43158794 + AT_rich Low_complexity Low_complexity 1 38 0 258 160 0 0 chr11 107624957 107625007 -43158546 + (TG)n Simple_repeat Simple_repeat 1 50 0 23 54 0 0 chr11 107625940 107625977 -43157576 + AT_rich Low_complexity Low_complexity 1 37 0 377 188 0 0 chr11 107626434 107626498 -43157055 - MER94 DNA DNA -61 73 10 2809 276 75 30 chr11 107627338 107628125 -43155428 + L1M4b LINE L1 38 788 -6171 489 17 0 0 chr11 107628125 107628183 -43155370 + (TA)n Simple_repeat Simple_repeat 2 59 0 2809 276 75 30 chr11 107628183 107629377 -43154176 + L1M4b LINE L1 788 2168 -4791 199 325 86 68 chr11 107629480 107629643 -43153910 + MER5A DNA MER1_type 2 167 -22 483 211 75 124 chr11 107630223 107630488 -43153065 + MLT1E1 LTR MaLR 1 252 -341 984 255 64 0 chr11 107630790 107631132 -43152421 + MLT1E1 LTR MaLR 302 654 0 1913 156 0 3 chr11 107634225 107634527 -43149026 + AluSx SINE Alu 1 301 -11 2284 74 33 0 chr11 107634587 107634886 -43148667 + AluY SINE Alu 1 309 -2 293 323 13 77 chr11 107635206 107635361 -43148192 - L2 LINE L2 0 3272 3128 222 219 0 0 chr11 107635454 107635495 -43148058 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 2089 124 0 7 chr11 107635554 107635861 -43147692 - AluSg1 SINE Alu -4 305 1 362 279 48 0 chr11 107635916 107636020 -43147533 + MIR SINE MIR 53 161 -101 21 0 0 0 chr11 107636606 107636627 -43146926 + AT_rich Low_complexity Low_complexity 1 21 0 942 255 50 62 chr11 107637670 107638106 -43145447 + MER110A LTR ERV1 38 468 0 2246 39 42 7 chr11 107638212 107638495 -43145058 + AluY SINE Alu 1 293 -18 1161 212 37 85 chr11 107638711 107639171 -43144382 + MER110-int LTR ERV1 1044 3730 -3071 368 232 24 40 chr11 107639184 107639309 -43144244 - LTR41 LTR ERVL 0 773 651 6445 244 72 40 chr11 107639417 107641544 -43142009 + MER110-int LTR ERV1 2453 4647 0 1445 160 20 0 chr11 107641605 107641855 -43141698 - L1PA12 LINE L1 -299 5869 5615 5217 76 43 1 chr11 107641855 107642590 -43140963 - MER4E LTR ERV1 0 766 1 252 0 0 0 chr11 107642818 107642846 -43140707 + (A)n Simple_repeat Simple_repeat 1 28 0 826 327 34 17 chr11 107645533 107645949 -43137604 - MER4E-int LTR ERV1 -2088 2559 2137 507 327 81 32 chr11 107646379 107646833 -43136720 - MER4E-int LTR ERV1 -2918 3883 3544 2487 173 19 14 chr11 107647519 107648011 -43135542 - MER4E-int LTR ERV1 -4064 4100 129 7195 27 1 1 chr11 107648680 107649579 -43133974 + L1PA4 LINE L1 5277 6175 0 4463 149 22 36 chr11 107650813 107651597 -43131956 - MER4E-int LTR ERV1 -5973 785 13 5249 81 28 15 chr11 107651608 107652364 -43131189 - MER4E LTR ERV1 0 766 1 2323 150 27 4 chr11 107652364 107652951 -43130602 - L1P4 LINE L1 -544 5619 5019 591 229 64 21 chr11 107652960 107653148 -43130405 + MER110A LTR ERV1 239 434 -34 221 358 101 22 chr11 107653316 107653495 -43130058 + L2 LINE L2 2915 3107 -206 1326 233 118 6 chr11 107653525 107653881 -43129672 - MSTD LTR MaLR 0 396 1 191 378 52 26 chr11 107654383 107654576 -43128977 - L2 LINE L2 -1899 1415 1218 295 305 68 8 chr11 107655385 107655503 -43128050 + L2 LINE L2 3174 3298 -15 4064 146 31 51 chr11 107657078 107657918 -43125635 - L1MC1 LINE L1 0 6333 5511 24 0 0 0 chr11 107657961 107657985 -43125568 + AT_rich Low_complexity Low_complexity 1 24 0 224 254 60 0 chr11 107658553 107658620 -43124933 - MIR SINE MIR -74 188 118 235 208 21 83 chr11 107659140 107659236 -43124317 + L1MC4 LINE L1 6614 6703 -1339 228 163 0 0 chr11 107659239 107659282 -43124271 + (TG)n Simple_repeat Simple_repeat 2 44 0 288 328 37 0 chr11 107660907 107661041 -43122512 + L1ME3A LINE L1 6015 6153 -17 589 289 85 37 chr11 107661182 107661428 -43122125 - MIR SINE MIR -2 260 3 345 288 22 109 chr11 107661500 107661684 -43121869 - L2 LINE L2 -5 3308 3141 715 189 23 6 chr11 107661911 107662086 -43121467 - L1MA7 LINE L1 -1 6290 6113 2484 259 39 38 chr11 107662524 107662821 -43120732 - L1ME2 LINE L1 -3 6230 5935 952 225 98 31 chr11 107662821 107663146 -43120407 - MER7A DNA MER2_type 0 346 2 2484 259 39 38 chr11 107663146 107664193 -43119360 - L1ME2 LINE L1 -298 5935 4892 2035 277 122 30 chr11 107664229 107666102 -43117451 - L1ME2 LINE L1 -1402 4813 2770 226 60 0 120 chr11 107666115 107666165 -43117388 - L1M4 LINE L1 -3789 2357 2314 261 0 0 0 chr11 107666335 107666364 -43117189 + (T)n Simple_repeat Simple_repeat 1 29 0 22 35 0 0 chr11 107666779 107666808 -43116745 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr11 107666808 107666828 -43116725 + (C)n Simple_repeat Simple_repeat 1 20 0 1793 172 10 0 chr11 107666833 107667141 -43116412 - AluSx SINE Alu -1 311 1 419 291 57 24 chr11 107667147 107667443 -43116110 - L1ME2 LINE L1 -4102 2294 1989 1789 233 75 122 chr11 107667444 107668587 -43114966 + MER52A LTR ERV1 666 1755 0 340 302 65 14 chr11 107668680 107668895 -43114658 - L1ME2 LINE L1 -4501 1895 1670 702 266 75 25 chr11 107668919 107669400 -43114153 + L1MC3 LINE L1 2978 3482 -2664 234 0 0 0 chr11 107669424 107669450 -43114103 + (A)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chr11 107669663 107669683 -43113870 + (A)n Simple_repeat Simple_repeat 1 20 0 352 270 49 37 chr11 107669683 107669846 -43113707 + L1MC3 LINE L1 3510 3674 -2472 * 20654 106 13 11 chr11 107669840 107673928 -43109625 + L1PA8 LINE L1 2089 6171 -1 374 203 39 12 chr11 107673925 107674037 -43109516 + L1MC3 LINE L1 3669 3780 -2366 * 3926 245 86 34 chr11 107674061 107676808 -43106745 + L1MC3 LINE L1 3937 6920 -865 2507 65 3 0 chr11 107676808 107677118 -43106435 + AluY SINE Alu 1 311 0 3926 245 86 34 chr11 107677118 107677472 -43106081 + L1MC3 LINE L1 6920 7254 -531 2830 184 121 131 chr11 107677676 107677948 -43105605 + L1MC3 LINE L1 6637 6910 -875 1859 148 3 0 chr11 107677948 107678258 -43105295 + AluY SINE Alu 1 311 0 2830 184 121 131 chr11 107678258 107678465 -43105088 + L1MC3 LINE L1 6910 7118 -667 245 258 34 11 chr11 107678465 107678554 -43104999 + MLT1F1 LTR MaLR 35 125 -442 2830 184 121 131 chr11 107678554 107679146 -43104407 + L1MC3 LINE L1 7118 7785 0 47 82 0 0 chr11 107679528 107679638 -43103915 + AT_rich Low_complexity Low_complexity 1 110 0 22 56 0 0 chr11 107679736 107679772 -43103781 + AT_rich Low_complexity Low_complexity 1 36 0 1246 206 41 38 chr11 107680075 107680390 -43103163 + L1 LINE L1 17 332 -7233 4123 198 30 8 chr11 107680397 107681325 -43102228 + L1 LINE L1 3942 4893 -2672 2598 107 63 45 chr11 107681325 107681826 -43101727 + L1MA2 LINE L1 5791 6304 0 25 31 0 0 chr11 107681979 107682011 -43101542 + AT_rich Low_complexity Low_complexity 1 32 0 222 229 36 12 chr11 107682434 107682517 -43101036 + (TA)n Simple_repeat Simple_repeat 2 86 0 763 249 132 19 chr11 107682517 107682927 -43100626 - L1ME LINE L1 -503 5728 5278 261 289 30 24 chr11 107682954 107683120 -43100433 - L1ME LINE L1 -919 5296 5130 1268 241 107 24 chr11 107683297 107683841 -43099712 - L1ME LINE L1 -1537 4678 4090 319 339 24 0 chr11 107685154 107685319 -43098234 + L1MEc LINE L1 1516 1684 -4712 21 57 0 0 chr11 107685469 107685504 -43098049 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr11 107686886 107686925 -43096628 + AT_rich Low_complexity Low_complexity 1 39 0 247 259 59 35 chr11 107687506 107687591 -43095962 + L3 LINE CR1 1410 1496 -81 341 371 31 72 chr11 107687777 107688068 -43095485 - L2 LINE L2 -9 3263 2985 242 93 0 23 chr11 107688122 107688165 -43095388 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 260 296 136 25 chr11 107688284 107688446 -43095107 + MIR SINE MIR 5 184 -78 215 317 122 34 chr11 107688549 107688754 -43094799 + MIR SINE MIR 31 253 -9 2023 141 0 3 chr11 107688792 107689096 -43094457 + AluSg SINE Alu 1 303 -7 198 0 0 0 chr11 107689241 107689263 -43094290 + (A)n Simple_repeat Simple_repeat 1 22 0 461 259 108 16 chr11 107690303 107690488 -43093065 - MER110 LTR ERV1 -30 461 260 243 256 0 49 chr11 107690642 107690724 -43092829 - MER110A LTR ERV1 -298 170 93 554 223 27 9 chr11 107690905 107691017 -43092536 - FLAM_A SINE Alu -19 114 1 265 308 17 8 chr11 107691137 107691254 -43092299 - L1ME LINE L1 -2484 3731 3614 425 306 94 44 chr11 107691353 107691585 -43091968 - L1ME LINE L1 -2710 3505 3286 1969 143 0 3 chr11 107691585 107691885 -43091668 - AluSg SINE Alu -9 301 3 425 306 94 44 chr11 107691885 107692132 -43091421 - L1ME LINE L1 -2929 3286 3002 759 224 0 0 chr11 107692138 107692285 -43091268 - FRAM SINE Alu -28 148 2 24 0 0 0 chr11 107692285 107692309 -43091244 + AT_rich Low_complexity Low_complexity 1 24 0 318 309 62 33 chr11 107692442 107692652 -43090901 - HAL1b LINE L1 -740 608 393 1356 133 8 19 chr11 107693519 107693775 -43089778 - L1MA5A LINE L1 -3 6294 6042 2525 183 29 39 chr11 107693781 107694339 -43089214 + L1M2 LINE L1 4770 5328 -969 1902 158 7 7 chr11 107694339 107694642 -43088911 + AluSx SINE Alu 1 303 -9 2525 183 29 39 chr11 107694642 107694908 -43088645 + L1M2 LINE L1 5328 5595 -702 645 269 120 33 chr11 107694910 107695451 -43088102 - L1MEc LINE L1 -4622 1630 1023 914 300 25 39 chr11 107695573 107696013 -43087540 - L1MEc LINE L1 -5596 800 367 1679 149 43 14 chr11 107696978 107697259 -43086294 - AluSx SINE Alu -23 289 1 275 213 11 106 chr11 107697443 107697537 -43086016 + L1MDb LINE L1 204 288 -6121 1823 215 145 14 chr11 107697555 107698500 -43085053 + L1MDb LINE L1 834 1894 -4512 5878 184 52 78 chr11 107698516 107699498 -43084055 + L1MCa LINE L1 19 944 -5482 1675 162 32 51 chr11 107699498 107699813 -43083740 + AluSx SINE Alu 1 309 -3 5878 184 52 78 chr11 107699813 107700462 -43083091 + L1MCa LINE L1 944 1608 -4818 1379 162 23 30 chr11 107700493 107700758 -43082795 + AluJb SINE Alu 18 280 -32 1515 152 58 39 chr11 107700811 107701141 -43082412 - THE1C LTR MaLR -35 340 5 7623 149 86 40 chr11 107701146 107702654 -43080899 - THE1C-int LTR MaLR 0 1580 4 1543 170 46 22 chr11 107702676 107703000 -43080553 - THE1C LTR MaLR -43 332 1 1371 154 52 42 chr11 107703001 107703135 -43080418 + L1MCa LINE L1 1701 1832 -4594 2117 112 0 0 chr11 107703135 107703421 -43080132 + AluSg SINE Alu 1 286 -24 1371 154 52 42 chr11 107703421 107703592 -43079961 + L1MCa LINE L1 1832 2009 -4417 846 267 111 50 chr11 107703583 107704118 -43079435 - L1M3c LINE L1 -5028 1113 505 * 1128 276 96 48 chr11 107704180 107705141 -43078412 + L1MD2 LINE L1 4205 5211 -935 542 224 0 67 chr11 107705143 107705322 -43078231 + L1MD2 LINE L1 5951 6117 -242 3763 144 56 39 chr11 107705322 107706198 -43077355 + MER11B LTR ERVK 1 1146 -120 1032 80 43 0 chr11 107706200 107706338 -43077215 - AluY SINE Alu -167 144 1 750 82 0 33 chr11 107706339 107706461 -43077092 + MER11A LTR ERVK 1149 1266 0 834 192 49 45 chr11 107706461 107706706 -43076847 + L1MD2 LINE L1 6112 6357 -2 263 307 22 58 chr11 107707120 107707257 -43076296 + L1MEd LINE L1 460 591 -5528 1839 162 0 7 chr11 107707316 107707612 -43075941 + AluJo SINE Alu 1 294 -18 253 233 0 0 chr11 107707676 107707736 -43075817 + HAL1 LINE L1 1503 1562 -945 267 203 0 0 chr11 107708281 107708340 -43075213 + (TG)n Simple_repeat Simple_repeat 2 60 0 35 0 0 0 chr11 107708463 107708498 -43075055 + AT_rich Low_complexity Low_complexity 1 35 0 333 382 69 4 chr11 107708713 107708959 -43074594 - HAL1b LINE L1 -774 574 313 240 336 87 17 chr11 107711134 107711291 -43072262 - MIR SINE MIR -77 131 5 522 0 0 0 chr11 107711432 107711490 -43072063 + (CA)n Simple_repeat Simple_repeat 2 59 0 1011 222 166 48 chr11 107711524 107712047 -43071506 + MER34C LTR ERV1 1 585 0 2441 242 77 58 chr11 107712560 107714296 -43069257 + L1MCb LINE L1 31 1811 -4753 512 254 34 0 chr11 107714527 107714704 -43068849 - MER53 DNA DNA -3 186 4 370 331 99 51 chr11 107714914 107715207 -43068346 + L2 LINE L2 294 600 -2714 523 208 28 14 chr11 107715377 107715521 -43068032 - LTR43 LTR ERV1 -281 321 176 1350 208 169 21 chr11 107715659 107716086 -43067467 - LTR2B LTR ERV1 0 490 1 305 321 44 48 chr11 107716160 107716412 -43067141 + L2 LINE L2 560 810 -2504 400 331 178 27 chr11 107716648 107717243 -43066310 + L2 LINE L2 818 1502 -1812 1379 228 54 69 chr11 107717268 107717490 -43066063 - MLT1C LTR MaLR -1 466 242 2369 169 29 2 chr11 107717490 107717903 -43065650 + MSTB LTR MaLR 1 424 -2 1379 228 54 69 chr11 107717903 107718141 -43065412 - MLT1C LTR MaLR -225 242 13 1074 216 5 5 chr11 107718275 107718474 -43065079 + AluJo SINE Alu 7 205 -107 417 153 0 0 chr11 107718524 107718596 -43064957 + (CA)n Simple_repeat Simple_repeat 2 73 0 194 383 149 0 chr11 107718778 107718953 -43064600 + L2 LINE L2 2244 2444 -870 548 315 123 15 chr11 107719181 107719899 -43063654 + L1MCb LINE L1 2559 3353 -3211 302 186 55 110 chr11 107719983 107720128 -43063425 + L1MCb LINE L1 3536 3672 -2892 2396 70 0 7 chr11 107720167 107720465 -43063088 + AluY SINE Alu 1 296 -15 512 15 15 0 chr11 107720465 107720530 -43063023 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 14780 210 90 8 chr11 107720558 107726490 -43057063 + L1PB1 LINE L1 14 6505 -362 214 117 13 78 chr11 107726494 107726571 -43056982 + (TA)n Simple_repeat Simple_repeat 2 73 0 360 94 88 25 chr11 107726598 107726757 -43056796 + (CATAT)n Simple_repeat Simple_repeat 2 170 0 256 135 0 79 chr11 107726759 107726848 -43056705 + (TA)n Simple_repeat Simple_repeat 2 83 0 296 111 81 41 chr11 107726859 107727031 -43056522 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 2359 122 5 21 chr11 107727062 107727438 -43056115 + L1PB1 LINE L1 6498 6867 0 500 224 69 0 chr11 107727619 107727735 -43055818 + FLAM_C SINE Alu 1 124 -19 1107 299 117 6 chr11 107728101 107728942 -43054611 + L1ME3A LINE L1 5087 6049 -121 25 51 0 0 chr11 107729816 107729855 -43053698 + AT_rich Low_complexity Low_complexity 1 39 0 718 345 13 4 chr11 107730248 107730477 -43053076 - MIR SINE MIR 0 262 32 34 24 0 0 chr11 107731729 107731770 -43051783 + AT_rich Low_complexity Low_complexity 1 41 0 1617 160 0 41 chr11 107731771 107732107 -43051446 + AluJb SINE Alu 1 324 0 201 208 21 0 chr11 107732360 107732408 -43051145 - MIR SINE MIR -104 158 110 217 391 75 23 chr11 107732445 107732578 -43050975 - L2 LINE L2 -17 3255 3116 22 0 0 0 chr11 107732913 107732935 -43050618 + AT_rich Low_complexity Low_complexity 1 22 0 253 244 70 12 chr11 107733253 107733339 -43050214 - MIR3 SINE MIR -13 195 105 216 0 0 0 chr11 107733565 107733589 -43049964 + (CA)n Simple_repeat Simple_repeat 2 25 0 216 0 0 0 chr11 107734350 107734374 -43049179 + (CAAGC)n Simple_repeat Simple_repeat 1 24 0 24 53 0 0 chr11 107735102 107735140 -43048413 + AT_rich Low_complexity Low_complexity 1 38 0 203 0 37 0 chr11 107735179 107735206 -43048347 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 328 287 69 55 chr11 107737093 107737295 -43046258 + L1M4 LINE L1 4936 5140 -1006 728 318 55 73 chr11 107737320 107737814 -43045739 - L2 LINE L2 -18 3295 2811 298 306 138 17 chr11 107738233 107738524 -43045029 - L1M4 LINE L1 -1319 4827 4502 27 92 0 0 chr11 107738535 107738611 -43044942 + AT_rich Low_complexity Low_complexity 1 76 0 534 318 70 49 chr11 107738622 107739110 -43044443 - L1M4 LINE L1 -1799 4347 3850 358 310 43 38 chr11 107739260 107739444 -43044109 + Charlie8 DNA MER1_type 34 218 -2199 2437 237 44 10 chr11 107740081 107740765 -43042788 - L1MB7 LINE L1 -19 6663 5957 3130 201 41 46 chr11 107740766 107741554 -43041999 - LTR1 LTR ERV1 -1 784 1 2097 127 25 9 chr11 107741554 107741876 -43041677 - HUERS-P2 LTR ERV1 0 3088 2762 5471 179 30 23 chr11 107741876 107742989 -43040564 - HUERS-P2 LTR ERV1 -1901 1187 5 3251 166 38 71 chr11 107742992 107743804 -43039749 - LTR1 LTR ERV1 0 785 1 760 233 12 113 chr11 107743805 107744299 -43039254 - L1MB7 LINE L1 -717 5959 5517 * 4714 270 63 33 chr11 107744291 107746304 -43037249 - L1MB7 LINE L1 -2097 4547 2596 288 0 0 0 chr11 107746304 107746336 -43037217 + (TG)n Simple_repeat Simple_repeat 1 32 0 4714 270 63 33 chr11 107746336 107748410 -43035143 - L1MB7 LINE L1 -4048 2596 211 3355 139 24 68 chr11 107748410 107748446 -43035107 + LTR26 LTR ERV1 1 37 -566 1556 187 25 14 chr11 107748446 107748730 -43034823 + AluJb SINE Alu 1 287 -25 3355 139 24 68 chr11 107748730 107749324 -43034229 + LTR26 LTR ERV1 37 603 0 4714 270 63 33 chr11 107749324 107749542 -43034011 - L1MB7 LINE L1 -6433 211 1 689 194 0 15 chr11 107749552 107749686 -43033867 - FLAM_A SINE Alu 0 142 11 45 75 0 0 chr11 107749742 107749836 -43033717 + AT_rich Low_complexity Low_complexity 1 94 0 313 221 42 32 chr11 107749859 107749954 -43033599 - L1MC4 LINE L1 -1333 6709 6614 311 219 0 62 chr11 107749875 107749971 -43033582 + L1MC4 LINE L1 6615 6704 -1338 * 483 139 55 18 chr11 107749971 107750136 -43033417 + (TA)n Simple_repeat Simple_repeat 2 172 0 303 281 11 11 chr11 107750173 107750262 -43033291 - L1MC4 LINE L1 -1339 6703 6615 23 78 0 0 chr11 107750557 107750608 -43032945 + AT_rich Low_complexity Low_complexity 1 51 0 1587 163 117 18 chr11 107750936 107751262 -43032291 + MSTA LTR MaLR 71 428 0 238 399 30 25 chr11 107751289 107751492 -43032061 + L2 LINE L2 2851 3054 -259 24 53 0 0 chr11 107751886 107751924 -43031629 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr11 107752055 107752077 -43031476 + AT_rich Low_complexity Low_complexity 1 22 0 236 332 82 58 chr11 107752656 107752718 -43030835 + MIR SINE MIR 48 107 -155 1555 261 68 10 chr11 107752718 107753205 -43030348 - LTR40a LTR ERVL -4 515 1 236 332 82 58 chr11 107753205 107753350 -43030203 + MIR SINE MIR 107 260 -2 180 0 0 0 chr11 107755898 107755918 -43027635 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 264 30 0 0 chr11 107755917 107755950 -43027603 + (CA)n Simple_repeat Simple_repeat 1 33 0 1177 301 124 26 chr11 107756662 107757233 -43026320 - MLT2E LTR ERVL 0 628 2 23 0 0 0 chr11 107757540 107757563 -43025990 + AT_rich Low_complexity Low_complexity 1 23 0 1274 244 159 58 chr11 107757629 107758214 -43025339 - MLT1E1 LTR MaLR -10 644 1 276 149 0 0 chr11 107758267 107758314 -43025239 + (CA)n Simple_repeat Simple_repeat 2 48 0 251 138 35 17 chr11 107758319 107758377 -43025176 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 640 326 37 11 chr11 107758388 107758661 -43024892 - HERVL LTR ERVL -418 5236 4957 2157 311 39 3 chr11 107758703 107759488 -43024065 + ERVL LTR ERVL 3121 4015 -1749 197 238 12 0 chr11 107759488 107759568 -43023985 + (TA)n Simple_repeat Simple_repeat 2 82 0 23 0 0 0 chr11 107759826 107759849 -43023704 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr11 107760247 107760299 -43023254 + AT_rich Low_complexity Low_complexity 1 52 0 292 313 43 0 chr11 107762264 107762379 -43021174 - MIR SINE MIR -56 206 87 244 327 13 69 chr11 107763609 107763768 -43019785 + MER77 LTR ERV1 51 200 -405 * 972 246 79 99 chr11 107763748 107764341 -43019212 + MER21B LTR ERV1 133 713 -150 601 223 8 0 chr11 107764682 107764803 -43018750 - FLAM_C SINE Alu -21 122 1 180 0 0 0 chr11 107764969 107764989 -43018564 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 14365 52 1 0 chr11 107765003 107767574 -43015979 - L1PA6 LINE L1 -7 6147 3576 276 30 0 0 chr11 107767574 107767607 -43015946 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 22 35 0 0 chr11 107767610 107767639 -43015914 + AT_rich Low_complexity Low_complexity 1 29 0 345 185 26 52 chr11 107768613 107768690 -43014863 + AluS SINE Alu 2 63 -237 222 211 57 8 chr11 107768693 107768816 -43014737 + (TA)n Simple_repeat Simple_repeat 2 130 0 2080 193 34 88 chr11 107768822 107769472 -43014081 + LTR6A LTR ERV1 1 563 -1 251 271 0 0 chr11 107770134 107770182 -43013371 - MLT2B1 LTR ERVL -108 412 365 1953 130 10 3 chr11 107770191 107770491 -43013062 + AluSx SINE Alu 9 310 -2 857 209 77 26 chr11 107770530 107770764 -43012789 - MLT2B1 LTR ERVL -274 246 1 193 161 0 0 chr11 107771607 107771638 -43011915 - MIR SINE MIR -61 147 117 248 273 118 25 chr11 107771838 107771999 -43011554 + L1MEc LINE L1 1815 1990 -4406 * 6454 87 7 0 chr11 107771986 107773329 -43010224 + L1PA7 LINE L1 4770 6118 -36 799 103 9 0 chr11 107773329 107773437 -43010116 + L1PA7 LINE L1 6038 6154 0 232 273 16 80 chr11 107773437 107773624 -43009929 + L1MEc LINE L1 1963 2137 -4259 643 274 50 48 chr11 107773651 107774049 -43009504 + L1MEc LINE L1 2219 2617 -3598 601 279 60 21 chr11 107774056 107774389 -43009164 + L1MEc LINE L1 3740 4085 -2130 1306 234 16 0 chr11 107774392 107774695 -43008858 - L1MB1 LINE L1 -303 5886 5579 1248 216 16 38 chr11 107774696 107775011 -43008542 + L1MA10 LINE L1 6027 6334 0 1962 129 7 3 chr11 107775023 107775318 -43008235 + AluSp SINE Alu 1 296 -17 1673 264 84 14 chr11 107775387 107775684 -43007869 + L1MEc LINE L1 4089 4363 -1852 1946 115 25 3 chr11 107775684 107775970 -43007583 - AluY SINE Alu -19 292 1 1673 264 84 14 chr11 107775970 107776489 -43007064 + L1MEc LINE L1 4363 4963 -1252 859 200 67 0 chr11 107776490 107776655 -43006898 + FRAM SINE Alu 1 176 0 2167 105 10 0 chr11 107776655 107776950 -43006603 + AluY SINE Alu 1 298 -13 492 0 44 0 chr11 107776950 107777018 -43006535 + (TA)n Simple_repeat Simple_repeat 2 72 0 299 302 82 17 chr11 107777039 107777271 -43006282 + L1MEc LINE L1 4996 5242 -973 3300 155 52 44 chr11 107777312 107777970 -43005583 + LTR51 LTR ERV1 9 671 0 5401 199 32 19 chr11 107778030 107779259 -43004294 + L1 LINE L1 3731 4975 -1171 2267 177 37 7 chr11 107779259 107779689 -43003864 - LTR24 LTR ERV1 0 467 25 1797 188 19 10 chr11 107780284 107780694 -43002859 - L1P LINE L1 -801 6783 6370 * 11316 209 29 17 chr11 107780668 107784900 -42998653 - L1PA12 LINE L1 -2764 4820 1 43 35 0 0 chr11 107785149 107785206 -42998347 + AT_rich Low_complexity Low_complexity 1 57 0 478 258 87 67 chr11 107785833 107786282 -42997271 - LTR37B LTR ERV1 -4 464 7 1544 186 3 48 chr11 107787041 107787352 -42996201 + AluSx SINE Alu 1 297 -15 28 48 0 0 chr11 107787467 107787509 -42996044 + AT_rich Low_complexity Low_complexity 1 42 0 390 326 8 16 chr11 107788062 107788191 -42995362 + MER58A DNA MER1_type 1 128 0 22 0 0 0 chr11 107788281 107788303 -42995250 + AT_rich Low_complexity Low_complexity 1 22 0 773 174 0 0 chr11 107789499 107789620 -42993933 + 5S rRNA rRNA 1 121 0 24 53 0 0 chr11 107789620 107789658 -42993895 + AT_rich Low_complexity Low_complexity 1 38 0 1956 172 24 19 chr11 107789786 107790159 -42993394 - THE1C LTR MaLR 0 375 1 2279 95 0 7 chr11 107790212 107790517 -42993036 + AluSp SINE Alu 1 303 -10 2808 223 43 48 chr11 107790904 107790982 -42992571 - L1MA10 LINE L1 -129 6205 6128 1350 188 44 15 chr11 107790982 107791376 -42992177 + AluJb SINE Alu 2 403 0 303 28 0 0 chr11 107791375 107791411 -42992142 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 2808 223 43 48 chr11 107791376 107791634 -42991919 - L1MA10 LINE L1 -206 6128 5870 1929 161 27 21 chr11 107791634 107792007 -42991546 + THE1C LTR MaLR 1 375 0 2808 223 43 48 chr11 107792007 107792589 -42990964 - L1MA10 LINE L1 -464 5870 5324 2903 189 34 12 chr11 107792682 107793339 -42990214 - L1MA10 LINE L1 -1260 4886 4216 680 135 10 0 chr11 107793339 107793443 -42990110 + AluSx SINE Alu 27 131 -181 685 115 66 4 chr11 107793443 107793949 -42989604 + (TA)n Simple_repeat Simple_repeat 1 537 0 1168 126 0 16 chr11 107793986 107794168 -42989385 + AluSx SINE Alu 133 311 -1 752 236 17 6 chr11 107794168 107794346 -42989207 - L1MA10 LINE L1 -1922 4224 4045 594 227 0 26 chr11 107794347 107794501 -42989052 - L1MA10 LINE L1 -2176 3970 3821 565 179 116 12 chr11 107794694 107795048 -42988505 - L1MA4 LINE L1 -1 6299 5902 37 86 0 0 chr11 107795100 107795193 -42988360 + AT_rich Low_complexity Low_complexity 1 93 0 332 381 109 23 chr11 107795586 107796318 -42987235 - L2 LINE L2 -82 3231 2354 518 244 26 103 chr11 107796395 107796735 -42986818 - L1ME1 LINE L1 -14 6152 5839 198 0 0 0 chr11 107797030 107797052 -42986501 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 26 0 0 0 chr11 107797716 107797742 -42985811 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr11 107798031 107798057 -42985496 + AT_rich Low_complexity Low_complexity 1 26 0 664 263 143 49 chr11 107798510 107798936 -42984617 + LTR50 LTR ERVL 1 466 -329 2151 194 32 28 chr11 107798942 107799544 -42984009 + pTR5 LTR ERV1 741 1344 -1094 4697 113 91 21 chr11 107799563 107800332 -42983221 + LTR12 LTR ERV1 4 826 0 326 284 45 0 chr11 107800403 107800491 -42983062 + LTR50 LTR ERVL 584 675 -120 26 0 0 0 chr11 107801189 107801215 -42982338 + AT_rich Low_complexity Low_complexity 1 26 0 397 244 63 31 chr11 107801372 107801671 -42981882 + L1ME3A LINE L1 5577 5962 -208 1993 144 0 0 chr11 107801750 107802042 -42981511 - AluSx SINE Alu -16 296 5 21 36 0 0 chr11 107802095 107802123 -42981430 + AT_rich Low_complexity Low_complexity 1 28 0 198 103 0 0 chr11 107802182 107802211 -42981342 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 709 248 111 61 chr11 107802211 107803010 -42980543 - L1ME2 LINE L1 -9 6155 5119 555 90 0 0 chr11 107803070 107803148 -42980405 + (TA)n Simple_repeat Simple_repeat 1 78 0 2421 65 0 3 chr11 107803264 107803574 -42979979 - AluY SINE Alu -2 309 1 432 313 134 0 chr11 107803667 107803868 -42979685 - MIR SINE MIR -26 236 9 369 62 0 0 chr11 107805172 107805220 -42978333 + (CA)n Simple_repeat Simple_repeat 1 48 0 25 31 0 0 chr11 107806574 107806606 -42976947 + AT_rich Low_complexity Low_complexity 1 32 0 2131 105 7 0 chr11 107806764 107807059 -42976494 + AluSq SINE Alu 1 297 -16 36 23 0 0 chr11 107807613 107807656 -42975897 + AT_rich Low_complexity Low_complexity 1 43 0 293 167 0 0 chr11 107807664 107807712 -42975841 - MLT1A1 LTR MaLR -2 455 408 487 79 0 0 chr11 107807714 107807790 -42975763 - AluSp/q SINE Alu -6 307 232 869 227 149 51 chr11 107807792 107808087 -42975466 - MLT1A1 LTR MaLR -41 324 1 21 0 0 0 chr11 107808466 107808487 -42975066 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 107809127 107809149 -42974404 + AT_rich Low_complexity Low_complexity 1 22 0 13160 181 30 45 chr11 107809475 107813408 -42970145 - L1MA2 LINE L1 -3 7720 3727 2249 106 3 0 chr11 107813408 107813709 -42969844 - AluSg SINE Alu -3 307 6 13160 181 30 45 chr11 107813709 107813886 -42969667 - L1MA2 LINE L1 -3996 3727 3549 204 40 0 0 chr11 107813886 107813911 -42969642 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 13160 181 30 45 chr11 107813911 107817274 -42966279 - L1MA2 LINE L1 -4174 3549 18 26 50 0 0 chr11 107817444 107817484 -42966069 + AT_rich Low_complexity Low_complexity 1 40 0 21 71 0 0 chr11 107817752 107817794 -42965759 + AT_rich Low_complexity Low_complexity 1 42 0 1778 181 52 35 chr11 107817877 107818302 -42965251 + MSTB1 LTR MaLR 1 432 0 249 352 124 39 chr11 107818608 107818841 -42964712 - MIR SINE MIR -2 260 8 2295 88 0 28 chr11 107820486 107820806 -42962747 - AluY SINE Alu 0 311 1 310 341 133 6 chr11 107821153 107821326 -42962227 - MIR SINE MIR -19 243 49 22 35 0 0 chr11 107822344 107822373 -42961180 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr11 107822854 107822885 -42960668 + AT_rich Low_complexity Low_complexity 1 31 0 27 62 0 0 chr11 107822923 107822971 -42960582 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr11 107823160 107823181 -42960372 + AT_rich Low_complexity Low_complexity 1 21 0 350 241 51 63 chr11 107823834 107823992 -42959561 + MER65B LTR ERV1 365 520 -11 227 81 32 48 chr11 107824281 107824343 -42959210 + (TTA)n Simple_repeat Simple_repeat 2 62 0 21 57 0 0 chr11 107824853 107824888 -42958665 + AT_rich Low_complexity Low_complexity 1 35 0 5101 67 0 1 chr11 107824986 107825639 -42957914 - L1PA7 LINE L1 -25 6129 5478 7495 76 43 3 chr11 107825640 107826775 -42956778 + L1P LINE L1 4233 5421 -743 29 60 0 0 chr11 107826812 107826862 -42956691 + AT_rich Low_complexity Low_complexity 1 50 0 2310 124 94 8 chr11 107826963 107827357 -42956196 + MSTA LTR MaLR 1 428 0 27 49 0 0 chr11 107827873 107827914 -42955639 + AT_rich Low_complexity Low_complexity 1 41 0 1437 311 152 17 chr11 107828113 107828987 -42954566 + L2 LINE L2 1547 2538 -776 317 160 0 0 chr11 107829004 107829054 -42954499 - AluSp/q SINE Alu -83 220 171 762 330 87 23 chr11 107829160 107829563 -42953990 + L2 LINE L2 2794 3223 -90 269 102 41 0 chr11 107829574 107829623 -42953930 + CT-rich Low_complexity Low_complexity 4 54 0 1914 143 0 4 chr11 107829644 107829924 -42953629 - AluSx SINE Alu -32 280 2 27 29 0 0 chr11 107830982 107831016 -42952537 + AT_rich Low_complexity Low_complexity 1 34 0 370 275 45 67 chr11 107833004 107833182 -42950371 + HAL1 LINE L1 1108 1281 -1226 23 0 0 0 chr11 107833186 107833209 -42950344 + AT_rich Low_complexity Low_complexity 1 23 0 209 33 33 0 chr11 107833350 107833380 -42950173 + (CTATA)n Simple_repeat Simple_repeat 5 35 0 802 267 20 11 chr11 107833773 107834193 -42949360 + MLT1C LTR MaLR 1 461 -6 1581 220 68 8 chr11 107835276 107835658 -42947895 + MER31B LTR ERV1 1 405 -61 382 318 35 12 chr11 107836070 107836243 -42947310 + LTR40b LTR ERVL 188 364 -98 232 187 13 13 chr11 107836270 107836345 -42947208 + (TA)n Simple_repeat Simple_repeat 1 75 0 192 40 0 0 chr11 107836347 107836372 -42947181 + (CA)n Simple_repeat Simple_repeat 2 26 0 759 219 73 4 chr11 107836499 107836745 -42946808 + L1MC4 LINE L1 7720 7982 -60 509 205 145 0 chr11 107836745 107836862 -42946691 - MER110 LTR ERV1 -11 480 347 524 215 101 0 chr11 107836951 107837100 -42946453 - MER110 LTR ERV1 -282 209 46 21 0 0 0 chr11 107837138 107837159 -42946394 + AT_rich Low_complexity Low_complexity 1 21 0 4063 95 33 0 chr11 107837500 107838154 -42945399 + L1MC/D LINE L1 4821 5499 -743 21 0 0 0 chr11 107838485 107838506 -42945047 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 107838588 107838609 -42944944 + (TC)n Simple_repeat Simple_repeat 2 22 0 189 171 0 0 chr11 107838609 107838644 -42944909 + (TA)n Simple_repeat Simple_repeat 1 35 0 665 254 132 0 chr11 107839390 107839595 -42943958 + MIR SINE MIR 17 248 -14 23 54 0 0 chr11 107840186 107840223 -42943330 + AT_rich Low_complexity Low_complexity 1 37 0 25 51 0 0 chr11 107840607 107840646 -42942907 + AT_rich Low_complexity Low_complexity 1 39 0 254 231 34 0 chr11 107841557 107841643 -42941910 - MIR SINE MIR -63 145 100 903 253 119 7 chr11 107841719 107842004 -42941549 - MER110 LTR ERV1 -5 486 170 293 195 35 46 chr11 107842457 107842544 -42941009 - MER110-int LTR ERV1 -253 4394 4309 2701 77 44 8 chr11 107842637 107843259 -42940294 - L1PA10 LINE L1 -471 5660 5019 3198 107 8 6 chr11 107843259 107843736 -42939817 + L1PA10 LINE L1 5689 6166 -2 378 282 20 59 chr11 107843750 107843952 -42939601 - MER110-int LTR ERV1 -448 4199 4006 465 301 68 76 chr11 107844326 107844560 -42938993 - MER110-int LTR ERV1 -3980 667 437 1371 190 69 24 chr11 107844560 107844850 -42938703 - AluJb SINE Alu -9 303 1 465 301 68 76 chr11 107844850 107845073 -42938480 - MER110-int LTR ERV1 -4210 437 214 284 331 84 11 chr11 107845372 107845550 -42938003 - MER89-int LTR ERV1 -4493 2308 2118 226 278 28 0 chr11 107845715 107845787 -42937766 - L1ME LINE L1 -668 5494 5421 258 321 118 35 chr11 107846059 107846765 -42936788 + L1ME3A LINE L1 3712 4475 -1671 921 228 62 62 chr11 107847329 107847601 -42935952 - MLT1A1 LTR MaLR -93 272 1 1805 88 4 13 chr11 107848943 107849181 -42934372 + AluSq SINE Alu 1 236 -77 4607 109 19 16 chr11 107849183 107849869 -42933684 - LTR12 LTR ERV1 0 688 1 508 178 61 61 chr11 107850055 107850268 -42933285 - pTR5 LTR ERV1 -1410 1028 816 397 151 31 39 chr11 107850270 107850390 -42933163 + Alu SINE Alu 238 294 -7 546 183 87 0 chr11 107850390 107850505 -42933048 - L1MB2 LINE L1 -10 6161 6037 385 272 172 36 chr11 107850678 107850957 -42932596 + L1ME3A LINE L1 5538 5854 -316 1652 253 34 20 chr11 107851185 107851778 -42931775 + L1MB7 LINE L1 2276 2876 -3270 * 3444 220 25 13 chr11 107851770 107852750 -42930803 + L1MB7 LINE L1 5175 6172 -12 417 248 39 26 chr11 107852791 107852944 -42930609 - Charlie2 DNA MER1_type -2308 474 320 8847 184 12 5 chr11 107853100 107855281 -42928272 + L1PB1 LINE L1 1 1644 -5219 13720 201 25 18 chr11 107855282 107856563 -42926990 + L1PB1 LINE L1 1779 3050 -3817 565 113 0 0 chr11 107856563 107856643 -42926910 + MADE1 DNA Mariner 1 80 0 13720 201 25 18 chr11 107856643 107858135 -42925418 + L1PB1 LINE L1 3050 4530 -2337 1971 141 10 0 chr11 107858135 107858433 -42925120 + AluY SINE Alu 1 301 -10 13720 201 25 18 chr11 107858433 107860658 -42922895 + L1PB1 LINE L1 4530 6861 -6 670 275 40 89 chr11 107861018 107861092 -42922461 - L1MCc LINE L1 -4887 1536 1460 1567 153 36 0 chr11 107861092 107861340 -42922213 - AluJb SINE Alu -50 262 6 670 275 40 89 chr11 107861340 107861713 -42921840 - L1MCc LINE L1 -4963 1460 1111 254 314 19 44 chr11 107861999 107862158 -42921395 - L1MCc LINE L1 -6249 174 20 532 136 0 0 chr11 107862441 107862522 -42921031 + AluSc SINE Alu 213 293 -16 725 199 115 0 chr11 107862532 107862688 -42920865 + AluJb SINE Alu 131 304 -8 379 227 62 10 chr11 107862690 107862787 -42920766 + L1MC1 LINE L1 5965 6066 -267 3855 111 111 20 chr11 107862790 107863484 -42920069 + Tigger3b DNA MER2_type 1 757 -474 219 245 0 0 chr11 107863662 107863715 -42919838 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 225 0 0 0 chr11 107863726 107863751 -42919802 + (TA)n Simple_repeat Simple_repeat 2 26 0 241 181 111 28 chr11 107863825 107863897 -42919656 + L1MC5 LINE L1 7836 7913 -48 21 0 0 0 chr11 107863899 107863920 -42919633 + AT_rich Low_complexity Low_complexity 1 21 0 203 275 117 42 chr11 107864862 107864982 -42918571 + MIR SINE MIR 12 140 -122 329 289 48 0 chr11 107865810 107865893 -42917660 + L1MC4 LINE L1 6616 6702 -1340 21 0 0 0 chr11 107866631 107866652 -42916901 + AT_rich Low_complexity Low_complexity 1 21 0 21779 174 29 24 chr11 107866652 107870498 -42913055 + L1PA11 LINE L1 1191 5874 -1738 2084 116 6 28 chr11 107870498 107870818 -42912735 + AluSq SINE Alu 1 313 0 21779 174 29 24 chr11 107870818 107872564 -42910989 + L1PA11 LINE L1 5874 7610 -2 1144 166 104 4 chr11 107872571 107872812 -42910741 - L1MA9 LINE L1 -35 6277 6013 2345 93 17 0 chr11 107872875 107873220 -42910333 - L1PB1 LINE L1 0 6151 5801 3758 276 87 61 chr11 107873257 107873693 -42909860 - L1M4c LINE L1 -4616 2343 1920 1471 206 14 3 chr11 107873693 107873975 -42909578 - AluJb SINE Alu -23 289 5 3758 276 87 61 chr11 107873975 107874262 -42909291 - L1M4c LINE L1 -5039 1920 1642 2023 129 0 26 chr11 107874262 107874573 -42908980 - AluSx SINE Alu -9 303 1 3758 276 87 61 chr11 107874573 107876115 -42907438 - L1M4c LINE L1 -5317 1642 4 4664 56 3 2 chr11 107876341 107876931 -42906622 - L1PA6 LINE L1 0 6154 5564 1969 121 20 17 chr11 107877197 107877494 -42906059 - AluSx SINE Alu -14 298 1 333 280 132 37 chr11 107877535 107877778 -42905775 - L1MC4a LINE L1 -1869 5939 5674 239 276 0 9 chr11 107877779 107877895 -42905658 + CT-rich Low_complexity Low_complexity 3 117 0 2179 165 39 29 chr11 107877987 107878535 -42905018 + LTR10E LTR ERV1 1 613 -5 703 141 7 78 chr11 107878619 107878761 -42904792 - AluJo SINE Alu -176 136 5 8296 103 82 97 chr11 107879220 107880965 -42902588 - pTR5 LTR ERV1 0 2438 264 270 356 7 34 chr11 107882494 107882643 -42900910 + MIR SINE MIR 15 159 -103 318 320 79 66 chr11 107884356 107884737 -42898816 - MLT1J LTR MaLR -53 458 73 7522 197 116 33 chr11 107886211 107887831 -42895722 - MER52A LTR ERV1 -1 1754 1 21 57 0 0 chr11 107887909 107887944 -42895609 + AT_rich Low_complexity Low_complexity 1 35 0 228 143 0 0 chr11 107888368 107888410 -42895143 + (TG)n Simple_repeat Simple_repeat 1 42 0 1731 179 3 16 chr11 107888998 107889310 -42894243 - AluSx SINE Alu -4 308 1 1942 210 38 76 chr11 107889542 107890118 -42893435 - MLT2B3 LTR ERVL 0 554 1 388 293 55 12 chr11 107891614 107891778 -42891775 + MLT1J1 LTR MaLR 1 171 -275 2070 279 54 54 chr11 107891984 107893328 -42890225 + L1MEc LINE L1 470 1813 -4583 485 263 31 12 chr11 107893388 107893548 -42890005 + L1MEc LINE L1 551 713 -5683 639 288 18 5 chr11 107893585 107893804 -42889749 + L1MEc LINE L1 1853 2074 -4322 37 0 0 0 chr11 107894022 107894059 -42889494 + AT_rich Low_complexity Low_complexity 1 37 0 182 293 98 0 chr11 107894398 107894480 -42889073 + L3 LINE CR1 1354 1443 -134 23 0 0 0 chr11 107894913 107894936 -42888617 + AT_rich Low_complexity Low_complexity 1 23 0 382 311 73 6 chr11 107895476 107895640 -42887913 + MIR SINE MIR 88 262 0 505 281 107 41 chr11 107896071 107896267 -42887286 - MER63A DNA MER1_type -1 209 1 408 322 111 24 chr11 107897669 107897877 -42885676 + L2 LINE L2 2422 2647 -667 22 56 0 0 chr11 107898038 107898074 -42885479 + AT_rich Low_complexity Low_complexity 1 36 0 1182 220 11 64 chr11 107899772 107899994 -42883559 + MER2 DNA MER2_type 2 199 -145 1815 176 0 10 chr11 107899994 107900307 -42883246 - AluSx SINE Alu -2 310 1 1182 220 11 64 chr11 107900307 107900443 -42883110 + MER2 DNA MER2_type 199 341 -3 1679 155 69 4 chr11 107900467 107900744 -42882809 + AluJb SINE Alu 1 295 -17 22 35 0 0 chr11 107901130 107901159 -42882394 + AT_rich Low_complexity Low_complexity 1 29 0 787 279 123 21 chr11 107901473 107901813 -42881740 + LTR16A LTR ERVL 76 450 0 526 255 14 43 chr11 107902047 107902255 -42881298 - L1M4 LINE L1 -1449 4697 4496 500 266 67 108 chr11 107902266 107902831 -42880722 - MER34 LTR ERV1 0 542 1 1020 266 162 62 chr11 107902890 107904049 -42879504 - L1M4 LINE L1 -1760 4386 3082 989 173 6 6 chr11 107904049 107904211 -42879342 - FRAM SINE Alu -4 162 1 1020 266 162 62 chr11 107904211 107904350 -42879203 - L1M4 LINE L1 -3064 3082 2958 182 245 0 20 chr11 107904626 107904675 -42878878 - MER5B DNA MER1_type -113 65 18 2100 196 26 19 chr11 107904773 107905202 -42878351 - MSTB1 LTR MaLR 0 432 1 213 94 0 0 chr11 107905331 107905363 -42878190 + (TA)n Simple_repeat Simple_repeat 1 32 0 28 48 0 0 chr11 107907692 107907734 -42875819 + AT_rich Low_complexity Low_complexity 1 42 0 929 240 60 46 chr11 107908636 107909048 -42874505 + HERVL40 LTR ERVL 1370 1692 -1345 2947 6 0 0 chr11 107909115 107909433 -42874120 - AluYb8 SINE Alu 0 318 1 1200 260 64 69 chr11 107909492 107909963 -42873590 + HERVL40 LTR ERVL 1727 4376 -1027 2106 136 0 0 chr11 107910394 107910689 -42872864 + AluSq SINE Alu 1 295 -18 23 54 0 0 chr11 107912106 107912143 -42871410 + AT_rich Low_complexity Low_complexity 1 37 0 1304 235 184 39 chr11 107913259 107913672 -42869881 + MER77 LTR ERV1 1 473 -132 31294 102 10 17 chr11 107913678 107918210 -42865343 - L1PA7 LINE L1 0 6469 1959 6499 120 19 30 chr11 107918210 107919293 -42864260 + MER11C LTR ERVK 1 1071 0 31294 102 10 17 chr11 107919293 107920539 -42863014 - L1PA7 LINE L1 -4510 1959 706 669 229 7 0 chr11 107920539 107920679 -42862874 + MER77 LTR ERV1 465 605 0 882 246 63 41 chr11 107920782 107921151 -42862402 - L1MC3 LINE L1 0 7785 7405 1148 220 53 66 chr11 107921151 107921546 -42862007 + MLT1B LTR MaLR 1 390 0 882 246 63 41 chr11 107921546 107921590 -42861963 - L1MC3 LINE L1 -380 7405 7363 4735 173 42 9 chr11 107921613 107922756 -42860797 - L1MA4 LINE L1 -6 6294 5111 3176 83 9 22 chr11 107922809 107923257 -42860296 - MLT2A1 LTR ERVL 0 444 3 709 145 8 0 chr11 107923259 107923376 -42860177 - HERVL-A1 LTR ERVL 0 5654 5537 * 9529 90 29 6 chr11 107923373 107924476 -42859077 - HERVL LTR ERVL -3378 2276 1137 2195 109 7 10 chr11 107924476 107924780 -42858773 - AluSg SINE Alu -7 303 1 9529 90 29 6 chr11 107924780 107924970 -42858583 - HERVL LTR ERVL -4517 1137 953 1467 191 18 25 chr11 107924974 107925286 -42858267 - AluJo SINE Alu 0 310 1 6278 195 51 41 chr11 107925295 107926132 -42857421 - L1M1 LINE L1 -4065 1263 1137 2344 57 3 7 chr11 107926132 107926431 -42857122 - AluY SINE Alu -13 298 1 6278 195 51 41 chr11 107926431 107927580 -42855973 - L1M1 LINE L1 -4191 1137 1 1389 261 49 16 chr11 107927589 107928018 -42855535 - L1MC3 LINE L1 -431 7354 6912 30 27 0 0 chr11 107928157 107928194 -42855359 + AT_rich Low_complexity Low_complexity 1 37 0 2120 96 7 7 chr11 107928561 107928853 -42854700 + AluSx SINE Alu 1 292 -20 374 0 22 0 chr11 107929939 107929985 -42853568 + (TG)n Simple_repeat Simple_repeat 2 48 0 27 0 0 0 chr11 107930238 107930265 -42853288 + AT_rich Low_complexity Low_complexity 1 27 0 367 247 21 21 chr11 107930569 107930666 -42852887 - MIR SINE MIR -10 252 156 387 0 0 0 chr11 107931454 107931497 -42852056 + (TG)n Simple_repeat Simple_repeat 1 43 0 327 226 10 10 chr11 107931719 107931821 -42851732 + (TA)n Simple_repeat Simple_repeat 1 102 0 249 118 47 24 chr11 107931870 107931955 -42851598 + (TA)n Simple_repeat Simple_repeat 1 87 0 272 78 39 59 chr11 107932168 107932219 -42851334 - MLT2B1 LTR ERVL 0 520 471 2541 194 47 14 chr11 107932283 107932799 -42850754 - MLT2B3 LTR ERVL -19 535 3 2060 151 3 33 chr11 107932848 107933213 -42850340 + Tigger2a DNA MER2_type 2 355 -79 1014 195 22 0 chr11 107933214 107933399 -42850154 + Tigger2 DNA MER2_type 2528 2716 -2 25 0 0 0 chr11 107935853 107935878 -42847675 + AT_rich Low_complexity Low_complexity 1 25 0 414 0 0 0 chr11 107936944 107936990 -42846563 + (TG)n Simple_repeat Simple_repeat 1 46 0 213 197 66 16 chr11 107937002 107937063 -42846490 + GA-rich Low_complexity Low_complexity 2 65 0 430 311 53 48 chr11 107937201 107937410 -42846143 - MIR SINE MIR -12 250 41 256 228 89 106 chr11 107938616 107938739 -42844814 - MIR SINE MIR -86 176 56 2164 152 68 22 chr11 107941305 107941714 -42841839 + MSTA LTR MaLR 1 428 0 8391 206 24 2 chr11 107941714 107943325 -42840228 + MSTA-int LTR MaLR 1 1646 -5 2131 158 61 19 chr11 107943330 107943741 -42839812 + MSTA LTR MaLR 1 428 0 1405 228 32 30 chr11 107943901 107944274 -42839279 + MLT1A2 LTR MaLR 1 374 0 299 336 134 0 chr11 107944295 107944527 -42839026 + LTR33A LTR ERVL 203 465 -58 371 201 6 156 chr11 107944571 107944750 -42838803 - L1MCa LINE L1 -4765 2176 2025 436 292 36 24 chr11 107944750 107944918 -42838635 - L1MCa LINE L1 -5135 1288 1119 222 62 0 0 chr11 107945180 107945212 -42838341 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 2311 96 0 0 chr11 107947216 107947518 -42836035 + AluSc SINE Alu 1 302 -7 249 119 0 0 chr11 107947645 107947687 -42835866 + (T)n Simple_repeat Simple_repeat 1 42 0 196 314 69 39 chr11 107947742 107947844 -42835709 + MIR SINE MIR 53 157 -105 24 53 0 0 chr11 107948226 107948264 -42835289 + AT_rich Low_complexity Low_complexity 1 38 0 1842 291 119 37 chr11 107948490 107949425 -42834128 + L1MCc LINE L1 312 1355 -5068 183 100 0 0 chr11 107949425 107949455 -42834098 + (CA)n Simple_repeat Simple_repeat 1 30 0 1842 291 119 37 chr11 107949455 107949632 -42833921 + L1MCc LINE L1 1355 1516 -4907 325 351 32 40 chr11 107950884 107951132 -42832421 - MLT1L LTR MaLR -8 607 362 1874 161 0 10 chr11 107951776 107952080 -42831473 - AluJb SINE Alu -9 303 3 271 289 25 33 chr11 107952404 107952525 -42831028 - L1ME2 LINE L1 -3 6159 6040 219 178 0 22 chr11 107953389 107953434 -42830119 + A-rich Low_complexity Low_complexity 2 45 0 203 340 143 14 chr11 107953553 107953700 -42829853 + MIR3 SINE MIR 35 200 -8 203 381 79 29 chr11 107955247 107955386 -42828167 - L3 LINE CR1 -22 1555 1410 949 294 81 100 chr11 107955723 107955992 -42827561 + L2 LINE L2 2182 2454 -859 1986 123 10 10 chr11 107955992 107956285 -42827268 - AluSx SINE Alu -17 295 3 949 294 81 100 chr11 107956285 107957170 -42826383 + L2 LINE L2 2454 3308 -5 3729 196 25 55 chr11 107957262 107958025 -42825528 - L1MB8 LINE L1 -3 6175 5445 1887 168 3 0 chr11 107958025 107958323 -42825230 - AluSx SINE Alu -13 299 1 3729 196 25 55 chr11 107958323 107958499 -42825054 - L1MB8 LINE L1 -733 5445 5265 1162 223 64 14 chr11 107958515 107958874 -42824679 - L1MB8 LINE L1 -917 5229 4853 2509 59 0 0 chr11 107958883 107959187 -42824366 + AluY SINE Alu 1 304 -7 973 309 85 36 chr11 107959300 107960292 -42823261 - L1MEc LINE L1 -5064 1332 293 910 72 0 16 chr11 107960470 107960595 -42822958 + AluY SINE Alu 188 310 -1 606 253 64 4 chr11 107960595 107960820 -42822733 - L1M4 LINE L1 -1291 4855 4618 618 201 8 0 chr11 107960837 107960971 -42822582 - L1PA15 LINE L1 -1074 5072 4938 * 4354 142 32 73 chr11 107960965 107961829 -42821724 + L1PA15 LINE L1 5088 5895 -270 1994 139 7 0 chr11 107961829 107962117 -42821436 + AluSx SINE Alu 1 290 -22 4354 142 32 73 chr11 107962117 107962378 -42821175 + L1PA15 LINE L1 5895 6165 0 * 4360 249 43 52 chr11 107962377 107963948 -42819605 - L1M4 LINE L1 -1526 4620 3069 1953 130 40 7 chr11 107963948 107964248 -42819305 - AluSg SINE Alu 0 310 1 4360 249 43 52 chr11 107964248 107964614 -42818939 - L1M4 LINE L1 -3077 3069 2701 262 336 93 23 chr11 107964724 107964983 -42818570 - L3 LINE CR1 -151 1426 1150 5866 96 38 8 chr11 107965166 107966395 -42817158 + L1PA13 LINE L1 4880 6150 -13 1297 290 108 4 chr11 107968196 107968723 -42814830 + L1MD3 LINE L1 7404 7985 -10 1611 223 41 49 chr11 107968846 107969237 -42814316 + MLT1D LTR MaLR 1 388 -117 512 115 0 21 chr11 107969238 107969334 -42814219 + (TCCCC)n Simple_repeat Simple_repeat 3 96 0 1750 170 7 0 chr11 107969341 107969617 -42813936 - AluJo SINE Alu -32 280 3 542 194 0 0 chr11 107969623 107969726 -42813827 + MLT1D LTR MaLR 403 505 0 235 222 0 0 chr11 107970259 107970304 -42813249 + (CAT)n Simple_repeat Simple_repeat 1 45 0 203 0 37 0 chr11 107970471 107970498 -42813055 + (TA)n Simple_repeat Simple_repeat 1 28 0 194 192 19 0 chr11 107970997 107971049 -42812504 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 1698 137 67 7 chr11 107972769 107973054 -42810499 + AluSx SINE Alu 1 302 -10 1914 150 6 13 chr11 107973337 107973651 -42809902 - AluSx SINE Alu 0 312 1 375 365 22 0 chr11 107974174 107974311 -42809242 - MIR SINE MIR -21 241 102 256 271 47 0 chr11 107974984 107975069 -42808484 + GA-rich Low_complexity Low_complexity 3 91 0 2518 114 13 2 chr11 107975335 107975728 -42807825 + L1PA13 LINE L1 5764 6160 -3 9378 151 44 16 chr11 107975739 107977131 -42806422 - Tigger2 DNA MER2_type -225 2493 1048 714 152 0 16 chr11 107977131 107977256 -42806297 - L1PA15 LINE L1 0 6165 6043 9378 151 44 16 chr11 107977256 107977491 -42806062 - Tigger2 DNA MER2_type -1670 1048 821 1134 172 9 37 chr11 107977552 107977767 -42805786 - Tigger2 DNA MER2_type -10 2708 2500 234 0 0 0 chr11 107977767 107977793 -42805760 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 3858 181 53 8 chr11 107977793 107978582 -42804971 - Tigger2 DNA MER2_type -1892 826 2 417 174 12 0 chr11 107978815 107978901 -42804652 + MER53 DNA DNA 11 97 -92 264 366 27 18 chr11 107978949 107979061 -42804492 - L2 LINE L2 -44 3228 3116 21 36 0 0 chr11 107980284 107980312 -42803241 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr11 107980561 107980597 -42802956 + AT_rich Low_complexity Low_complexity 1 36 0 433 168 13 0 chr11 107981089 107981204 -42802349 + (TA)n Simple_repeat Simple_repeat 1 116 0 450 321 18 12 chr11 107981271 107981439 -42802114 - MIR SINE MIR -29 233 65 388 149 0 0 chr11 107981520 107981587 -42801966 - U2 snRNA snRNA -111 77 11 2342 142 41 15 chr11 107981587 107982052 -42801501 + L1MA4 LINE L1 5817 6293 -7 382 189 100 0 chr11 107982318 107982400 -42801153 + MLT1B LTR MaLR 34 124 -266 252 330 27 9 chr11 107982400 107982512 -42801041 + MER34 LTR ERV1 1 114 -428 662 275 72 48 chr11 107982579 107982914 -42800639 + MER39 LTR ERV1 340 682 -25 1969 155 3 0 chr11 107982949 107983253 -42800300 - AluSx SINE Alu -7 305 1 738 210 26 142 chr11 107983277 107983586 -42799967 + MLT1B LTR MaLR 118 390 0 2037 117 0 3 chr11 107985852 107986134 -42797419 + AluSx SINE Alu 1 281 -31 209 32 0 32 chr11 107986137 107986168 -42797385 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 26 64 0 0 chr11 107986268 107986315 -42797238 + AT_rich Low_complexity Low_complexity 1 47 0 2096 174 39 28 chr11 107986427 107986962 -42796591 + MLT2A2 LTR ERVL 3 554 0 267 164 0 0 chr11 107987089 107987150 -42796403 + (CA)n Simple_repeat Simple_repeat 2 62 0 24 0 0 0 chr11 107987212 107987236 -42796317 + AT_rich Low_complexity Low_complexity 1 24 0 533 138 0 11 chr11 107988199 107988286 -42795267 - AluS SINE Alu -226 86 1 1951 143 0 7 chr11 107989216 107989510 -42794043 + AluSx SINE Alu 4 295 -17 3628 184 10 17 chr11 107989628 107990334 -42793219 + MER67C LTR ERV1 9 709 -1 21 71 0 0 chr11 107990450 107990492 -42793061 + AT_rich Low_complexity Low_complexity 1 42 0 1749 136 0 7 chr11 107990536 107990816 -42792737 + AluSg SINE Alu 1 278 -32 2040 206 29 50 chr11 107991147 107991672 -42791881 - MER67D LTR ERV1 0 514 1 1389 176 43 10 chr11 107992798 107993099 -42790454 + MER33 DNA MER1_type 1 311 -13 800 210 0 27 chr11 107993966 107994152 -42789401 + AluJo SINE Alu 122 302 -10 28 29 0 0 chr11 107994199 107994234 -42789319 + AT_rich Low_complexity Low_complexity 1 35 0 1547 197 24 17 chr11 107994239 107994533 -42789020 - AluJo SINE Alu -16 296 1 197 447 53 0 chr11 107994613 107994765 -42788788 - L2 LINE L2 -9 3263 3104 415 254 59 17 chr11 107995127 107995245 -42788308 + MER5A DNA MER1_type 35 157 -32 260 364 9 9 chr11 107996418 107996528 -42787025 - MIR SINE MIR -151 111 2 575 248 81 30 chr11 107996618 107996816 -42786737 - MIR SINE MIR -42 220 13 542 191 38 0 chr11 107997102 107997207 -42786346 - MLT1C-int LTR MaLR -1256 115 7 1294 244 20 50 chr11 107997207 107997564 -42785989 - MLT2C1 LTR ERVL -51 346 1 511 231 61 101 chr11 107997579 107997826 -42785727 + L1MDa LINE L1 198 434 -6106 1142 123 0 0 chr11 107997837 107998000 -42785553 - LOR1a LTR ERV1 0 497 335 3301 201 117 32 chr11 107998001 107999028 -42784525 + L1MDa LINE L1 1510 2623 -3917 783 158 97 161 chr11 107999026 107999367 -42784186 + L1MD2 LINE L1 5859 6177 -65 * 2588 110 12 5 chr11 107999992 108000393 -42783160 + L1PA13 LINE L1 5757 6160 -3 28 0 0 0 chr11 108001875 108001903 -42781650 + AT_rich Low_complexity Low_complexity 1 28 0 2630 113 46 2 chr11 108001944 108002358 -42781195 - L1MA2 LINE L1 -36 7687 7256 14546 184 34 10 chr11 108002371 108006240 -42777313 - L1MA2 LINE L1 -565 7158 3191 7767 202 91 19 chr11 108006231 108008333 -42775220 - L1MA2 LINE L1 -4812 2753 16 * 318 26 0 0 chr11 108010173 108010212 -42773341 + (CA)n Simple_repeat Simple_repeat 2 40 0 1507 232 57 31 chr11 108010738 108011175 -42772378 - MLT1C LTR MaLR 0 467 6 388 228 13 0 chr11 108011522 108011601 -42771952 + MER5A DNA MER1_type 110 189 0 246 344 16 63 chr11 108011601 108011763 -42771790 - MIR SINE MIR -49 213 61 780 187 64 35 chr11 108013284 108013487 -42770066 - MER3 DNA MER1_type 0 209 1 1638 179 51 21 chr11 108013637 108014095 -42769458 - MLT2A2 LTR ERVL 0 453 50 786 204 147 15 chr11 108014430 108014599 -42768954 - MLT1A2 LTR MaLR 0 374 229 270 0 0 0 chr11 108014599 108014629 -42768924 + (GA)n Simple_repeat Simple_repeat 1 30 0 786 204 147 15 chr11 108014629 108014761 -42768792 - MLT1A2 LTR MaLR -145 229 1 2194 259 61 73 chr11 108015021 108015370 -42768183 + L1ME1 LINE L1 4085 4437 -1897 261 59 0 0 chr11 108015370 108015404 -42768149 + MER58 DNA MER1_type 168 201 -140 5187 101 5 8 chr11 108015408 108016163 -42767390 - L1PA13 LINE L1 0 6163 5411 2194 259 61 73 chr11 108016163 108017895 -42765658 + L1ME1 LINE L1 4440 6334 0 2085 164 75 27 chr11 108018112 108018526 -42765027 + Tigger2a DNA MER2_type 1 434 0 774 266 67 69 chr11 108018572 108018655 -42764898 - ERVL LTR ERVL -351 5413 5331 351 0 0 0 chr11 108018655 108018694 -42764859 + (TG)n Simple_repeat Simple_repeat 2 40 0 774 266 67 69 chr11 108018694 108018851 -42764702 - ERVL LTR ERVL -433 5331 5175 1443 203 82 31 chr11 108018851 108019206 -42764347 + MER93b LTR ERV1 1 373 0 774 266 67 69 chr11 108019206 108019442 -42764111 - ERVL LTR ERVL -589 5175 4937 425 332 91 44 chr11 108019542 108020015 -42763538 - L2 LINE L2 -1198 2116 1622 23 0 0 0 chr11 108020455 108020478 -42763075 + AT_rich Low_complexity Low_complexity 1 23 0 2053 100 4 0 chr11 108020486 108020755 -42762798 - AluSx SINE Alu -36 276 7 332 18 455 0 chr11 108020914 108020969 -42762584 - MADE1 DNA Mariner 0 80 1 26 30 0 0 chr11 108022753 108022786 -42760767 + AT_rich Low_complexity Low_complexity 1 33 0 780 316 90 7 chr11 108023496 108023525 -42760028 + LTR16C LTR ERVL 191 216 -275 321 68 0 0 chr11 108023525 108023569 -42759984 + (TA)n Simple_repeat Simple_repeat 2 45 0 780 316 90 7 chr11 108023569 108023817 -42759736 + LTR16C LTR ERVL 216 491 0 22 0 0 0 chr11 108024106 108024128 -42759425 + AT_rich Low_complexity Low_complexity 1 22 0 1095 232 59 81 chr11 108024238 108024647 -42758906 + MER34 LTR ERV1 1 400 -142 1647 215 102 12 chr11 108024649 108024804 -42758749 - MER41B LTR ERV1 0 596 456 243 0 0 0 chr11 108024804 108024831 -42758722 + (TA)n Simple_repeat Simple_repeat 1 27 0 1647 215 102 12 chr11 108024831 108025139 -42758414 - MER41B LTR ERV1 -140 456 138 481 203 78 8 chr11 108025185 108025313 -42758240 + MER34 LTR ERV1 406 542 0 324 83 0 0 chr11 108025431 108025479 -42758074 + (T)n Simple_repeat Simple_repeat 1 48 0 400 347 99 25 chr11 108025736 108025978 -42757575 + MIR SINE MIR 1 260 -2 191 114 29 0 chr11 108025979 108026014 -42757539 + (TAA)n Simple_repeat Simple_repeat 1 36 0 2202 99 0 0 chr11 108027324 108027616 -42755937 - AluSc SINE Alu -17 292 1 210 362 103 17 chr11 108027861 108027977 -42755576 - MER5A DNA MER1_type -50 139 14 439 340 30 40 chr11 108028053 108028353 -42755200 + L2 LINE L2 2208 2504 -810 381 191 43 0 chr11 108030092 108030186 -42753367 - L1MA6 LINE L1 -1 6299 6202 21 36 0 0 chr11 108031701 108031729 -42751824 + AT_rich Low_complexity Low_complexity 1 28 0 441 232 0 21 chr11 108032018 108032113 -42751440 + MER21B LTR ERV1 1 93 -770 1932 243 72 94 chr11 108032130 108032866 -42750687 + MER21B LTR ERV1 19 738 -125 2530 54 0 0 chr11 108033802 108034100 -42749453 + AluY SINE Alu 1 298 -13 1267 185 51 7 chr11 108034251 108034527 -42749026 + L1MC1 LINE L1 18 305 -6121 1260 213 79 22 chr11 108034536 108034902 -42748651 + L1MC1 LINE L1 1268 1654 -4772 37 23 0 0 chr11 108035065 108035109 -42748444 + AT_rich Low_complexity Low_complexity 1 44 0 448 231 23 15 chr11 108035126 108035256 -42748297 + Zaphod DNA AcHobo 3742 3872 -159 462 210 0 0 chr11 108035458 108035558 -42747995 + L1MC1 LINE L1 1745 1844 -4582 4009 177 57 37 chr11 108035604 108035850 -42747703 + L1MC1 LINE L1 5725 5965 -648 2460 68 0 3 chr11 108035850 108036160 -42747393 + AluY SINE Alu 3 311 0 4009 177 57 37 chr11 108036160 108036779 -42746774 + L1MC1 LINE L1 5965 6607 -6 320 300 99 45 chr11 108036780 108037023 -42746530 + L1MEc LINE L1 1291 1546 -4850 690 306 90 28 chr11 108037024 108037635 -42745918 + L1MEc LINE L1 1600 2248 -4148 221 294 28 18 chr11 108037635 108037744 -42745809 + CT-rich Low_complexity Low_complexity 4 113 0 253 233 0 0 chr11 108037882 108037942 -42745611 + T-rich Low_complexity Low_complexity 1 60 0 202 339 17 0 chr11 108038013 108038072 -42745481 - L2 LINE L2 -17 3255 3196 228 330 113 48 chr11 108038289 108038625 -42744928 - L2 LINE L2 -776 2538 2181 422 273 91 8 chr11 108039632 108039764 -42743789 - MER58B DNA MER1_type -19 322 180 191 111 0 28 chr11 108040800 108040836 -42742717 + (TAA)n Simple_repeat Simple_repeat 1 35 0 242 280 10 40 chr11 108041030 108041130 -42742423 + MLT1K LTR MaLR 492 588 0 4238 225 64 10 chr11 108041354 108042341 -42741212 + MER45B DNA AcHobo 1 1040 0 387 333 113 5 chr11 108046509 108046713 -42736840 - MIR SINE MIR -26 236 11 212 0 0 35 chr11 108046862 108046891 -42736662 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 297 0 0 0 chr11 108046933 108046966 -42736587 + (TG)n Simple_repeat Simple_repeat 2 34 0 1938 192 18 8 chr11 108046978 108047364 -42736189 - MLT1B LTR MaLR 0 390 1 227 294 181 44 chr11 108047839 108047999 -42735554 + MER5A DNA MER1_type 8 189 0 532 351 74 26 chr11 108048045 108048466 -42735087 - MLT1J LTR MaLR 0 511 71 596 88 0 0 chr11 108048483 108048563 -42734990 + MADE1 DNA Mariner 1 80 0 330 87 0 0 chr11 108048616 108048662 -42734891 + (TG)n Simple_repeat Simple_repeat 2 47 0 708 228 52 21 chr11 108048670 108048903 -42734650 + L1ME2 LINE L1 5731 5970 -194 930 257 100 42 chr11 108048903 108049327 -42734226 - L1MEc LINE L1 -2784 3431 2944 2447 61 0 10 chr11 108049327 108049639 -42733914 - AluY SINE Alu -2 309 1 930 257 100 42 chr11 108049639 108049954 -42733599 - L1MEc LINE L1 -3271 2944 2649 474 281 116 26 chr11 108049972 108050353 -42733200 - L1MEc LINE L1 -4081 2315 1901 314 206 11 54 chr11 108050354 108050446 -42733107 + L1MC4 LINE L1 6615 6702 -1340 399 66 0 66 chr11 108050447 108050538 -42733015 + (TA)n Simple_repeat Simple_repeat 1 85 0 321 213 11 43 chr11 108050539 108050633 -42732920 + L1MC4 LINE L1 6612 6702 -1340 303 275 25 50 chr11 108050632 108050752 -42732801 - L1MC4 LINE L1 -1338 6704 6588 * 348 241 71 105 chr11 108050761 108051056 -42732497 - L1MEc LINE L1 -4559 1837 1553 205 203 14 40 chr11 108051220 108051294 -42732259 + (TTTAA)n Simple_repeat Simple_repeat 1 72 0 226 339 0 0 chr11 108051943 108051999 -42731554 - L2 LINE L2 -205 3067 3012 26 0 0 0 chr11 108053703 108053729 -42729824 + AT_rich Low_complexity Low_complexity 1 26 0 263 372 77 10 chr11 108053767 108053974 -42729579 + MIR SINE MIR 5 225 -37 667 202 0 0 chr11 108055816 108055945 -42727608 - L1PA13 LINE L1 -13 6150 6022 527 253 13 13 chr11 108055999 108056149 -42727404 + MIR SINE MIR 86 235 -27 318 350 48 5 chr11 108056952 108057138 -42726415 + L1MC4 LINE L1 5499 5692 -429 1549 190 16 13 chr11 108057193 108057498 -42726055 + AluJb SINE Alu 3 308 -4 23 68 0 0 chr11 108057517 108057561 -42725992 + AT_rich Low_complexity Low_complexity 1 44 0 10264 70 2 77 chr11 108058393 108060118 -42723435 + L1PA4 LINE L1 1 1595 -4551 18013 42 19 0 chr11 108060118 108063205 -42720348 + L1PA4 LINE L1 3086 6197 0 1486 280 111 99 chr11 108063212 108064529 -42719024 + HAL1 LINE L1 5 1490 -1017 413 312 24 0 chr11 108064529 108064654 -42718899 + MER94 DNA DNA 1 128 -6 1486 280 111 99 chr11 108064654 108065638 -42717915 + HAL1 LINE L1 1490 2460 -47 195 64 43 43 chr11 108067685 108067732 -42715821 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 446 264 8 0 chr11 108068618 108068739 -42714814 + L1MC4 LINE L1 5769 5890 -1918 * 3631 202 67 5 chr11 108068733 108069514 -42714039 + L1MC1 LINE L1 5505 6333 0 1027 261 96 95 chr11 108069556 108070461 -42713092 + L1MC4 LINE L1 5958 6948 -945 332 293 24 43 chr11 108071053 108071306 -42712247 - L1ME4a LINE L1 -237 5884 5637 362 102 0 0 chr11 108071354 108071403 -42712150 + MADE1 DNA Mariner 1 49 -31 24 0 0 0 chr11 108071462 108071486 -42712067 + AT_rich Low_complexity Low_complexity 1 24 0 271 357 29 8 chr11 108074098 108074342 -42709211 + L1MEd LINE L1 1029 1277 -4928 570 324 58 13 chr11 108074547 108074947 -42708606 - LTR16C LTR ERVL -23 468 35 22 35 0 0 chr11 108075282 108075311 -42708242 + AT_rich Low_complexity Low_complexity 1 29 0 13473 159 18 11 chr11 108075558 108077960 -42705593 + Tigger1 DNA MER2_type 1 2418 0 307 300 0 0 chr11 108077991 108078081 -42705472 + L1MEd LINE L1 2223 2312 -4084 1274 260 85 28 chr11 108078098 108078533 -42705020 + MLT1C LTR MaLR 6 465 -2 2850 243 34 3 chr11 108078538 108079295 -42704258 + MLT1C-int LTR MaLR 5 887 -484 920 284 39 16 chr11 108079435 108079741 -42703812 + MLT1C-int LTR MaLR 958 1270 -101 2063 206 67 22 chr11 108079797 108080061 -42703492 - L1MB4 LINE L1 -122 6058 5807 258 105 0 0 chr11 108080061 108080099 -42703454 + (TA)n Simple_repeat Simple_repeat 1 38 0 2063 206 67 22 chr11 108080099 108080387 -42703166 - L1MB4 LINE L1 -373 5807 5481 1054 157 55 18 chr11 108080385 108080659 -42702894 - L1MB4 LINE L1 -1560 4586 4303 * 917 327 98 10 chr11 108080778 108081197 -42702356 - L1M3a LINE L1 -5503 628 1 2188 241 20 10 chr11 108081197 108081786 -42701767 - L1M4 LINE L1 -960 5186 4592 244 217 58 0 chr11 108081804 108081873 -42701680 + MLT1C LTR MaLR 391 463 -4 254 329 47 22 chr11 108081999 108082276 -42701277 + L1MEd LINE L1 3436 3719 -2496 438 256 70 0 chr11 108082286 108082442 -42701111 - L1M4 LINE L1 -3787 2359 2193 799 274 65 44 chr11 108082444 108082995 -42700558 + L1ME3A LINE L1 4200 4762 -1453 314 240 108 16 chr11 108083207 108083336 -42700217 + L1P5 LINE L1 5296 5436 -718 1241 251 25 27 chr11 108083336 108083697 -42699856 - MLT1A1 LTR MaLR -2 363 10 240 289 19 19 chr11 108083711 108083815 -42699738 + L1ME3A LINE L1 5532 5635 -2219 319 288 105 20 chr11 108083894 108084047 -42699506 + L1ME3A LINE L1 5800 5965 -274 266 225 238 0 chr11 108084195 108084275 -42699278 + LTR1 LTR ERV1 27 125 -660 351 279 18 30 chr11 108084275 108084440 -42699113 + L1ME3A LINE L1 5858 6020 -219 1759 180 50 25 chr11 108084538 108084900 -42698653 - LOR1b LTR ERV1 -90 371 1 7544 97 2 0 chr11 108085161 108087025 -42696528 - L1PA7 LINE L1 -1 6153 4288 1651 199 49 23 chr11 108087147 108087533 -42696020 + MSTD LTR MaLR 1 396 0 240 322 7 56 chr11 108087706 108087849 -42695704 - MIR SINE MIR -13 249 114 22 0 0 0 chr11 108087981 108088003 -42695550 + AT_rich Low_complexity Low_complexity 1 22 0 321 337 34 34 chr11 108088479 108088654 -42694899 + MIR SINE MIR 10 184 -78 21 36 0 0 chr11 108090187 108090215 -42693338 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 108090280 108090301 -42693252 + AT_rich Low_complexity Low_complexity 1 21 0 731 370 72 47 chr11 108090435 108091098 -42692455 + L2 LINE L2 106 785 -2529 240 211 0 40 chr11 108091288 108091364 -42692189 + A-rich Low_complexity Low_complexity 4 76 0 404 329 45 48 chr11 108091739 108092077 -42691476 + L1ME3A LINE L1 1010 1257 -4862 795 260 67 94 chr11 108092244 108092503 -42691050 + L1ME3A LINE L1 3801 4065 -2064 1499 212 4 0 chr11 108092503 108092777 -42690776 - AluJb SINE Alu -28 284 10 795 260 67 94 chr11 108092777 108092917 -42690636 + L1ME3A LINE L1 4065 4207 -1922 2056 184 62 2 chr11 108092917 108093319 -42690234 - MSTB LTR MaLR 0 426 1 795 260 67 94 chr11 108093319 108093880 -42689673 + L1ME3A LINE L1 4207 4736 -1393 706 224 134 0 chr11 108094061 108094240 -42689313 + MER58A DNA MER1_type 4 206 -18 264 111 0 0 chr11 108094396 108094441 -42689112 + (CA)n Simple_repeat Simple_repeat 2 46 0 303 307 11 0 chr11 108094668 108094756 -42688797 + GA-rich Low_complexity Low_complexity 4 92 0 311 113 26 148 chr11 108094868 108094983 -42688570 - MSTA LTR MaLR 0 428 275 22 35 0 0 chr11 108095334 108095363 -42688190 + AT_rich Low_complexity Low_complexity 1 29 0 341 302 101 18 chr11 108095503 108095831 -42687722 + L1ME3A LINE L1 5577 5931 -222 500 296 80 57 chr11 108095913 108096510 -42687043 + L1ME3A LINE L1 5265 5875 -295 477 371 44 7 chr11 108096605 108096899 -42686654 - L2 LINE L2 -1893 1421 1117 297 0 0 0 chr11 108096956 108096989 -42686564 + (TG)n Simple_repeat Simple_repeat 2 34 0 397 293 182 31 chr11 108097944 108098367 -42685186 + L2 LINE L2 2003 2489 -825 2071 85 0 0 chr11 108098692 108098974 -42684579 - L1PA8 LINE L1 0 6172 5891 383 222 74 9 chr11 108099012 108099120 -42684433 - LTR19C LTR ERV1 -2 777 663 12547 178 19 2 chr11 108099220 108101350 -42682203 - HUERS-P3 LTR ERV1 -2746 6173 4009 4797 133 6 48 chr11 108101346 108102142 -42681411 - HUERS-P3 LTR ERV1 -5131 3788 3026 * 269 135 19 0 chr11 108102243 108102295 -42681258 + (TA)n Simple_repeat Simple_repeat 1 53 0 310 227 0 72 chr11 108102306 108102403 -42681150 + L1MC4 LINE L1 6614 6703 -1339 * 333 216 29 59 chr11 108102353 108102455 -42681098 - L1MC4 LINE L1 -1339 6703 6605 2243 229 27 15 chr11 108102464 108103011 -42680542 - HUERS-P3 LTR ERV1 -8330 589 36 1415 209 57 68 chr11 108103036 108103533 -42680020 - MER61E LTR ERV1 -2 777 131 296 187 161 24 chr11 108103532 108103657 -42679896 - LTR9 LTR ERV1 -472 140 1 * 317 303 0 0 chr11 108103681 108103770 -42679783 + L2 LINE L2 3225 3313 0 916 174 26 15 chr11 108104053 108104248 -42679305 - L1MA9 LINE L1 0 6312 6116 192 366 50 10 chr11 108104282 108104383 -42679170 + MER5A DNA MER1_type 6 110 -79 194 115 0 0 chr11 108105549 108105575 -42677978 + L2 LINE L2 3268 3293 -20 4759 43 5 22 chr11 108105754 108106008 -42677545 - LTR10C LTR ERV1 0 591 334 2301 88 0 0 chr11 108106008 108106303 -42677250 - AluSg SINE Alu -15 295 1 4759 43 5 22 chr11 108106303 108106649 -42676904 - LTR10C LTR ERV1 -257 334 1 201 39 0 0 chr11 108106848 108106874 -42676679 + (TC)n Simple_repeat Simple_repeat 2 27 0 2110 114 0 7 chr11 108108422 108108719 -42674834 - AluSg SINE Alu -15 295 1 713 256 47 21 chr11 108108934 108109125 -42674428 + LTR40a LTR ERVL 139 334 -185 441 0 0 0 chr11 108109183 108109232 -42674321 + (TG)n Simple_repeat Simple_repeat 2 50 0 326 301 0 7 chr11 108109321 108109457 -42674096 + (TA)n Simple_repeat Simple_repeat 1 135 0 247 299 90 45 chr11 108109908 108110085 -42673468 + MLT1J LTR MaLR 290 474 -37 23 0 0 0 chr11 108110207 108110230 -42673323 + AT_rich Low_complexity Low_complexity 1 23 0 326 345 35 51 chr11 108110934 108111092 -42672461 + L2 LINE L2 1715 1867 -1447 2121 118 0 0 chr11 108111092 108111398 -42672155 - AluSc SINE Alu -3 306 1 326 345 35 51 chr11 108111398 108111552 -42672001 + L2 LINE L2 1867 2022 -1292 710 273 17 11 chr11 108111865 108112041 -42671512 + LTR28 LTR ERV1 3 179 -841 871 246 94 60 chr11 108112069 108112568 -42670985 + MER52A LTR ERV1 275 1470 -136 360 340 19 6 chr11 108112566 108112725 -42670828 + MER52A LTR ERV1 1593 1753 -2 * 242 355 9 0 chr11 108112729 108112836 -42670717 + L2 LINE L2 2429 2536 -778 806 304 60 32 chr11 108114495 108114734 -42668819 + L1MCc LINE L1 30 288 -6135 1882 100 4 8 chr11 108114734 108114993 -42668560 - AluY SINE Alu -15 296 39 806 304 60 32 chr11 108114993 108115190 -42668363 + L1MCc LINE L1 288 478 -5945 677 156 7 7 chr11 108115342 108115477 -42668076 - L1MA7 LINE L1 -2 6289 6155 655 143 34 8 chr11 108115490 108115609 -42667944 - L1MA6 LINE L1 -4 6296 6175 297 0 0 0 chr11 108115796 108115829 -42667724 + (TAA)n Simple_repeat Simple_repeat 1 33 0 288 291 185 40 chr11 108116116 108116343 -42667210 - MLT1J LTR MaLR -64 447 188 21 0 0 0 chr11 108116545 108116566 -42666987 + AT_rich Low_complexity Low_complexity 1 21 0 321 325 59 35 chr11 108116651 108116820 -42666733 - MIR3 SINE MIR -35 173 1 25 0 0 0 chr11 108117339 108117364 -42666189 + AT_rich Low_complexity Low_complexity 1 25 0 203 339 62 0 chr11 108118361 108118426 -42665127 - L2 LINE L2 -225 3047 2979 216 307 34 11 chr11 108118570 108118658 -42664895 + MER5B DNA MER1_type 44 133 -45 244 327 97 31 chr11 108118821 108119078 -42664475 - L1ME LINE L1 -295 5875 5602 26 50 0 0 chr11 108119131 108119171 -42664382 + AT_rich Low_complexity Low_complexity 1 40 0 187 104 42 0 chr11 108119182 108119230 -42664323 + (TA)n Simple_repeat Simple_repeat 2 51 0 44 0 0 0 chr11 108119241 108119285 -42664268 + AT_rich Low_complexity Low_complexity 1 44 0 648 219 143 14 chr11 108120451 108120745 -42662808 - MLT1D LTR MaLR -2 503 148 1549 211 59 67 chr11 108121137 108121632 -42661921 - MLT1D LTR MaLR -9 584 3 820 300 67 32 chr11 108121652 108122206 -42661347 - L1ME3A LINE L1 -83 6087 5515 534 280 102 49 chr11 108122214 108122664 -42660889 - L1ME3A LINE L1 -2193 3953 3480 722 270 105 44 chr11 108122666 108123029 -42660524 - MLT1H1 LTR MaLR 0 555 171 1775 72 0 0 chr11 108123029 108123252 -42660301 + AluY SINE Alu 1 223 -88 303 293 0 30 chr11 108123372 108123471 -42660082 - LTR19C LTR ERV1 -683 96 1 1173 300 64 34 chr11 108123471 108124492 -42659061 - HUERS-P3 LTR ERV1 -1 8398 7332 5033 227 39 16 chr11 108124945 108126254 -42657299 - HUERS-P3 LTR ERV1 -5023 1973 657 1767 133 0 0 chr11 108126315 108126578 -42656975 + AluSc SINE Alu 1 263 -46 599 308 53 22 chr11 108127240 108127467 -42656086 + MIR SINE MIR 11 244 -18 1749 168 96 3 chr11 108127698 108128032 -42655521 - MLT1A1 LTR MaLR 0 365 1 218 377 38 0 chr11 108129251 108129357 -42654196 + MIR SINE MIR 6 115 -147 272 365 24 24 chr11 108129783 108129909 -42653644 + MIR SINE MIR 30 155 -107 508 310 44 52 chr11 108129932 108130161 -42653392 - MIR SINE MIR -30 232 6 211 255 0 0 chr11 108130271 108130318 -42653235 + (CTG)n Simple_repeat Simple_repeat 2 48 0 239 65 0 0 chr11 108130556 108130587 -42652966 + HSMAR1 DNA Mariner 1257 1287 0 1823 136 11 21 chr11 108130799 108131112 -42652441 - AluSx SINE Alu 0 311 2 448 285 42 42 chr11 108132071 108132264 -42651289 + L2 LINE L2 3116 3308 -5 201 74 0 0 chr11 108132506 108132533 -42651020 + (CGAG)n Simple_repeat Simple_repeat 3 29 0 1891 130 35 3 chr11 108134751 108135036 -42648517 - AluSx SINE Alu -18 294 1 1286 165 47 11 chr11 108135149 108135428 -42648125 + L1MA9 LINE L1 6017 6305 -7 21 89 0 0 chr11 108135656 108135712 -42647841 + AT_rich Low_complexity Low_complexity 1 56 0 225 241 0 0 chr11 108135761 108135819 -42647734 + (TG)n Simple_repeat Simple_repeat 1 58 0 289 295 0 36 chr11 108136196 108136362 -42647191 + CT-rich Low_complexity Low_complexity 2 161 0 264 149 0 0 chr11 108136987 108137034 -42646519 + (TA)n Simple_repeat Simple_repeat 1 47 0 336 83 0 0 chr11 108137210 108137258 -42646295 + (CA)n Simple_repeat Simple_repeat 1 48 0 320 269 58 45 chr11 108137377 108137533 -42646020 - L1 LINE L1 -2440 3706 3549 1995 200 39 40 chr11 108137577 108138104 -42645449 - L1MB7 LINE L1 -37 6143 5614 2143 181 29 24 chr11 108138104 108138513 -42645040 + MSTB LTR MaLR 1 411 -15 2104 98 3 3 chr11 108138519 108138804 -42644749 + AluSc SINE Alu 1 285 -24 668 199 112 58 chr11 108138841 108139047 -42644506 - L1MB7 LINE L1 -555 5619 5403 268 116 0 0 chr11 108139044 108139087 -42644466 + L1 LINE L1 4646 4688 -1458 * 1445 266 44 11 chr11 108139093 108139570 -42643983 - L1M4 LINE L1 -4937 1605 1113 396 226 12 0 chr11 108139572 108139656 -42643897 - L1M4 LINE L1 -5965 577 493 259 329 0 0 chr11 108140008 108140090 -42643463 + CT-rich Low_complexity Low_complexity 1 82 0 226 343 7 7 chr11 108140402 108140545 -42643008 + (TA)n Simple_repeat Simple_repeat 2 144 0 2040 198 41 29 chr11 108140623 108141042 -42642511 + Tigger2a DNA MER2_type 1 424 -10 474 297 81 52 chr11 108141259 108141640 -42641913 - L1 LINE L1 -3522 2624 2233 2241 88 3 19 chr11 108141908 108142216 -42641337 - AluSp SINE Alu -10 303 1 38 68 0 0 chr11 108143144 108143217 -42640336 + AT_rich Low_complexity Low_complexity 1 73 0 2211 120 38 19 chr11 108143424 108143792 -42639761 - THE1C LTR MaLR 0 375 1 29018 123 21 61 chr11 108144155 108150579 -42632974 + L1PA7 LINE L1 9 6154 0 24 53 0 0 chr11 108151063 108151101 -42632452 + AT_rich Low_complexity Low_complexity 1 38 0 3177 136 34 4 chr11 108151200 108151707 -42631846 - MER1A DNA MER1_type -1 526 5 1324 143 30 8 chr11 108152039 108152304 -42631249 - L1MA4 LINE L1 -1 6299 6029 1928 150 7 0 chr11 108152665 108152972 -42630581 + AluSx SINE Alu 1 309 -3 2222 80 0 26 chr11 108153186 108153488 -42630065 + AluSg SINE Alu 1 294 -16 425 340 87 8 chr11 108154027 108154268 -42629285 - MIR SINE MIR -1 261 2 651 219 0 16 chr11 108154593 108154716 -42628837 + FLAM_C SINE Alu 1 121 -22 207 100 0 0 chr11 108154716 108154746 -42628807 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 21 36 0 0 chr11 108155336 108155364 -42628189 + AT_rich Low_complexity Low_complexity 1 28 0 1630 173 3 48 chr11 108156541 108156853 -42626700 + AluSx SINE Alu 1 298 -14 952 159 0 0 chr11 108157096 108157241 -42626312 + AluSg/x SINE Alu 74 218 -94 25 0 0 0 chr11 108157356 108157381 -42626172 + AT_rich Low_complexity Low_complexity 1 25 0 269 230 27 14 chr11 108158140 108158214 -42625339 + GA-rich Low_complexity Low_complexity 2 76 0 225 310 52 43 chr11 108158525 108158580 -42624973 - MIR SINE MIR -92 170 117 638 210 24 0 chr11 108158580 108158704 -42624849 - FLAM_A SINE Alu -6 127 1 225 310 52 43 chr11 108158704 108158764 -42624789 - MIR SINE MIR -145 117 54 22 0 0 0 chr11 108159007 108159029 -42624524 + AT_rich Low_complexity Low_complexity 1 22 0 298 261 0 0 chr11 108160458 108160523 -42623030 + MIR SINE MIR 48 112 -150 543 322 82 0 chr11 108161038 108161246 -42622307 + MIR SINE MIR 17 241 -21 195 371 0 0 chr11 108162670 108162740 -42620813 - L2 LINE L2 -9 3304 3235 287 257 0 80 chr11 108163457 108163570 -42619983 + HAL1 LINE L1 2398 2501 -6 22 0 0 0 chr11 108164008 108164030 -42619523 + AT_rich Low_complexity Low_complexity 1 22 0 289 357 38 34 chr11 108164322 108164557 -42618996 + MIR SINE MIR 3 238 -24 2219 185 49 0 chr11 108164878 108165283 -42618270 + MSTB LTR MaLR 1 425 -1 778 213 0 7 chr11 108165655 108165805 -42617748 + MLT1A1 LTR MaLR 1 149 -216 1556 205 19 5 chr11 108165811 108166182 -42617371 - L1 LINE L1 -1628 4518 4143 * 3104 196 3 5 chr11 108166169 108166777 -42616776 - L1 LINE L1 -1827 4319 3713 * 5705 152 36 5 chr11 108166776 108168030 -42615523 + L1PB1 LINE L1 4513 5819 -332 414 0 0 0 chr11 108168030 108168076 -42615477 + (CA)n Simple_repeat Simple_repeat 2 47 0 5705 152 36 5 chr11 108168076 108168419 -42615134 + L1PB1 LINE L1 5819 6150 -1 536 218 29 15 chr11 108168477 108168629 -42614924 + MLT1A1 LTR MaLR 163 374 0 687 71 41 0 chr11 108169076 108169174 -42614379 + AluSq/x SINE Alu 8 109 -203 252 59 0 0 chr11 108169190 108169224 -42614329 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1270 219 88 30 chr11 108170124 108170522 -42613031 - LTR52 LTR ERVL 0 421 1 256 250 12 25 chr11 108170643 108170723 -42612830 + CT-rich Low_complexity Low_complexity 2 80 0 412 0 0 0 chr11 108171265 108171312 -42612241 - MADE1 DNA Mariner -27 53 7 376 340 87 10 chr11 108171546 108171752 -42611801 - L1M4c LINE L1 -4896 1488 1267 228 277 47 22 chr11 108171775 108171926 -42611627 - L1MEd LINE L1 -4698 1352 969 252 59 0 0 chr11 108172639 108172673 -42610880 + (CA)n Simple_repeat Simple_repeat 1 34 0 429 20 0 0 chr11 108172691 108172741 -42610812 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 1499 173 53 108 chr11 108173051 108173274 -42610279 - MLT2A2 LTR ERVL 0 554 320 1866 85 26 15 chr11 108173274 108173546 -42610007 + AluSc SINE Alu 35 309 0 1499 173 53 108 chr11 108173546 108173912 -42609641 - MLT2A2 LTR ERVL -234 320 1 1097 209 116 37 chr11 108174906 108175174 -42608379 + AluJb SINE Alu 1 289 -13 1775 327 83 25 chr11 108175656 108175933 -42607620 - HERV16 LTR ERVL -2115 2881 2622 2830 169 29 6 chr11 108175933 108176435 -42607118 - L1MB1 LINE L1 -5 6163 5647 212 0 36 0 chr11 108176435 108176463 -42607090 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2830 169 29 6 chr11 108176463 108176486 -42607067 - L1MB1 LINE L1 -521 5647 5626 1775 327 83 25 chr11 108176486 108177146 -42606407 - HERV16 LTR ERVL -2374 2622 1889 692 248 7 0 chr11 108177162 108177299 -42606254 + MER45A DNA AcHobo 1 138 -40 629 238 11 39 chr11 108177300 108177481 -42606072 - HERV16 LTR ERVL -3115 1881 1706 575 311 14 9 chr11 108177574 108177786 -42605767 - HERV16 LTR ERVL -3597 1399 1187 667 332 49 22 chr11 108177786 108178238 -42605315 - LTR16B LTR ERVL 0 464 1 388 318 23 81 chr11 108178238 108178622 -42604931 - HERV16 LTR ERVL 0 4996 4635 283 373 51 30 chr11 108178760 108179133 -42604420 - HERV16 LTR ERVL -573 4912 4532 295 224 26 0 chr11 108179442 108179518 -42604035 + MER6 DNA MER2_type 788 865 0 927 199 84 22 chr11 108179528 108179754 -42603799 + Tigger3(Golem) DNA MER2_type 16 255 -2774 348 341 68 5 chr11 108180185 108180405 -42603148 - HERV16 LTR ERVL -4754 242 9 217 270 79 0 chr11 108181517 108181580 -42601973 + MIR SINE MIR 97 164 -98 339 248 57 23 chr11 108182627 108182805 -42600748 - MLT1J LTR MaLR -324 291 44 415 253 124 76 chr11 108182829 108183040 -42600513 + L1M4 LINE L1 3453 3689 -2457 1460 155 0 40 chr11 108183040 108183292 -42600261 + AluJo SINE Alu 39 280 -32 415 253 124 76 chr11 108183292 108183436 -42600117 + L1M4 LINE L1 3689 3825 -2321 * 476 228 10 0 chr11 108183434 108183535 -42600018 + L1M4 LINE L1 4043 4144 -2002 22 0 0 0 chr11 108183538 108183560 -42599993 + AT_rich Low_complexity Low_complexity 1 22 0 636 273 81 19 chr11 108184541 108184750 -42598803 + MER58A DNA MER1_type 1 222 -2 226 244 103 13 chr11 108185634 108185712 -42597841 + MIR SINE MIR 171 255 -7 282 258 0 0 chr11 108185726 108185788 -42597765 + (TG)n Simple_repeat Simple_repeat 1 62 0 271 233 0 33 chr11 108187076 108187136 -42596417 + L2 LINE L2 3210 3267 -5 748 239 109 51 chr11 108187941 108188197 -42595356 - L1ME LINE L1 -606 5560 5320 1510 188 3 28 chr11 108188197 108188505 -42595048 - AluJb SINE Alu 0 303 3 748 239 109 51 chr11 108188505 108188711 -42594842 - L1ME LINE L1 -846 5320 5079 472 256 34 11 chr11 108188707 108188883 -42594670 - L1ME LINE L1 -2088 4058 3879 * 524 240 25 93 chr11 108188893 108189172 -42594381 - L1ME LINE L1 -2389 3757 3498 1396 263 52 72 chr11 108189172 108189696 -42593857 - LTR40a LTR ERVL 0 519 7 483 254 91 0 chr11 108189711 108189876 -42593677 - L1ME LINE L1 -2654 3492 3313 279 113 0 0 chr11 108189927 108189980 -42593573 + (GA)n Simple_repeat Simple_repeat 2 54 0 2128 112 0 14 chr11 108190180 108190474 -42593079 + AluSx SINE Alu 1 290 -22 261 234 0 0 chr11 108192085 108192149 -42591404 + (TG)n Simple_repeat Simple_repeat 2 65 0 725 273 72 5 chr11 108192510 108192719 -42590834 + MER58A DNA MER1_type 1 223 -1 209 176 0 0 chr11 108192782 108192816 -42590737 + (CA)n Simple_repeat Simple_repeat 1 34 0 290 350 25 6 chr11 108194010 108194173 -42589380 + L2 LINE L2 1481 1646 -1668 357 271 49 16 chr11 108194190 108194312 -42589241 - MIR SINE MIR -21 241 116 201 236 125 0 chr11 108194485 108194557 -42588996 + L2 LINE L2 1886 1966 -1348 483 281 161 52 chr11 108194559 108194826 -42588727 + L2 LINE L2 2674 2969 -345 302 182 15 0 chr11 108195231 108195297 -42588256 + GA-rich Low_complexity Low_complexity 5 71 0 1661 186 17 130 chr11 108195698 108196166 -42587387 - MSTB LTR MaLR -11 415 1 2039 102 27 10 chr11 108196458 108196752 -42586801 + AluSq SINE Alu 1 299 -14 20967 102 42 24 chr11 108197109 108197620 -42585933 - MER61-int LTR ERV1 -410 4807 4306 2973 160 29 87 chr11 108197620 108197884 -42585669 + LTR8 LTR ERV1 1 279 -412 2128 89 4 4 chr11 108197884 108198164 -42585389 + AluSg SINE Alu 1 280 -30 2973 160 29 87 chr11 108198164 108198631 -42584922 + LTR8 LTR ERV1 279 689 -2 20967 102 42 24 chr11 108198631 108199610 -42583943 - MER61-int LTR ERV1 -911 4306 3346 246 284 14 14 chr11 108199610 108199684 -42583869 - L1MDa LINE L1 -5599 941 868 20967 102 42 24 chr11 108199684 108201477 -42582076 - MER61-int LTR ERV1 -1871 3346 1391 800 184 32 37 chr11 108201457 108201647 -42581906 - MER61A-int LTR ERV1 -4650 567 379 * 180 0 0 0 chr11 108201647 108201667 -42581886 + (T)n Simple_repeat Simple_repeat 1 20 0 2251 86 23 0 chr11 108201848 108202150 -42581403 - AluSg SINE Alu -1 309 1 844 222 48 15 chr11 108202150 108202498 -42581055 - MER61A-int LTR ERV1 -4823 394 1 1522 142 96 37 chr11 108202498 108202822 -42580731 - MER61A LTR ERV1 0 343 1 635 192 0 0 chr11 108202824 108202944 -42580609 + MER6 DNA MER2_type 746 865 0 4695 149 74 20 chr11 108202954 108203613 -42579940 + Tigger3b DNA MER2_type 16 747 -2281 2433 86 0 0 chr11 108203613 108203914 -42579639 + AluSq SINE Alu 2 302 -11 4695 149 74 20 chr11 108203914 108204238 -42579315 + Tigger3b DNA MER2_type 747 1052 -179 1725 181 36 0 chr11 108204293 108204597 -42578956 + MER6 DNA MER2_type 131 445 -420 1340 120 92 0 chr11 108204598 108204815 -42578738 + PABL_A LTR ERV1 1 237 -423 501 104 0 0 chr11 108204811 108204878 -42578675 + PABL_A LTR ERV1 594 660 0 * 2390 177 7 5 chr11 108204878 108205300 -42578253 + MER6 DNA MER2_type 443 865 0 423 210 78 66 chr11 108205301 108205468 -42578085 - L1ME3A LINE L1 -218 5952 5784 283 292 80 69 chr11 108206172 108206460 -42577093 - ERVL LTR ERVL -378 5386 5096 1908 321 50 28 chr11 108207023 108207908 -42575645 - ERVL LTR ERVL -1901 3095 2192 231 114 0 0 chr11 108207946 108207981 -42575572 + (A)n Simple_repeat Simple_repeat 1 35 0 796 266 65 65 chr11 108207993 108208411 -42575142 - LTR16A1 LTR ERVL -39 418 1 405 0 0 0 chr11 108208656 108208701 -42574852 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 1873 200 101 40 chr11 108210525 108211069 -42572484 + MER101B LTR ERV1 1 474 0 1453 200 9 25 chr11 108211657 108211972 -42571581 + AluJo SINE Alu 1 310 -2 212 322 46 0 chr11 108211986 108212073 -42571480 + MIR SINE MIR 98 188 -74 2569 127 49 5 chr11 108212468 108212878 -42570675 + MSTA LTR MaLR 1 428 0 8639 188 31 2 chr11 108212878 108214483 -42569070 + MSTA-int LTR MaLR 1 1651 0 2006 137 139 13 chr11 108214483 108214863 -42568690 + MSTA LTR MaLR 1 428 0 190 306 67 60 chr11 108215424 108215558 -42567995 + MER5A DNA MER1_type 27 161 -28 365 307 118 79 chr11 108216002 108216419 -42567134 + L1MC/D LINE L1 5295 5727 -2081 724 333 69 49 chr11 108217097 108217547 -42566006 - L2 LINE L2 -12 3301 2843 399 124 25 25 chr11 108217627 108217748 -42565805 + (TA)n Simple_repeat Simple_repeat 1 121 0 859 222 101 0 chr11 108217889 108218087 -42565466 + MER58A DNA MER1_type 4 221 -3 293 151 0 19 chr11 108218091 108218144 -42565409 - L2 LINE L2 -515 2799 2748 323 324 141 0 chr11 108218169 108218311 -42565242 - L2 LINE L2 -511 2803 2642 294 95 0 0 chr11 108218421 108218463 -42565090 + (T)n Simple_repeat Simple_repeat 1 42 0 2414 67 0 16 chr11 108218649 108218965 -42564588 - AluY SINE Alu 0 311 1 219 306 47 12 chr11 108218966 108219051 -42564502 - L2 LINE L2 -796 2518 2431 361 350 51 18 chr11 108219276 108219493 -42564060 - L2 LINE L2 -2142 1172 949 303 264 31 62 chr11 108221828 108221957 -42561596 - LTR16C LTR ERVL 0 491 367 1947 142 3 0 chr11 108221971 108222284 -42561269 - AluY SINE Alu 0 314 1 2324 94 3 0 chr11 108223131 108223430 -42560123 - AluSx SINE Alu -12 300 1 1531 229 32 11 chr11 108223430 108223806 -42559747 - L1M2 LINE L1 -506 5806 5423 357 336 178 44 chr11 108223985 108224351 -42559202 + L2 LINE L2 37 451 -2863 2498 75 0 0 chr11 108224466 108224772 -42558781 - AluY SINE Alu -5 306 1 632 95 0 0 chr11 108224772 108224856 -42558697 - AluSg SINE Alu -226 84 1 181 261 123 0 chr11 108224868 108224933 -42558620 - MIR SINE MIR -79 183 111 244 384 60 15 chr11 108225593 108225726 -42557827 + MIR3 SINE MIR 7 145 -63 21 36 0 0 chr11 108225816 108225844 -42557709 + AT_rich Low_complexity Low_complexity 1 28 0 316 291 0 0 chr11 108227384 108227463 -42556090 - L2 LINE L2 -319 2953 2875 7180 49 3 1 chr11 108228398 108229608 -42553945 + L1PA7 LINE L1 4938 6151 -3 489 276 42 48 chr11 108230098 108230294 -42553259 - MIR SINE MIR -41 221 36 2016 138 0 0 chr11 108231044 108231326 -42552227 + AluSg SINE Alu 10 291 -19 2443 68 3 7 chr11 108233848 108234155 -42549398 - AluY SINE Alu -5 306 1 479 289 14 66 chr11 108234377 108234524 -42549029 + LTR33 LTR ERVL 308 442 -79 1707 196 18 6 chr11 108234524 108234866 -42548687 + MER7A DNA MER2_type 1 344 -2 479 289 14 66 chr11 108234866 108234929 -42548624 + LTR33 LTR ERVL 442 507 -14 315 341 102 11 chr11 108235160 108235336 -42548217 - L2 LINE L2 -3086 228 37 2531 235 53 56 chr11 108235515 108235891 -42547662 + L1MA9 LINE L1 5423 5799 -513 1965 119 37 14 chr11 108235891 108236185 -42547368 + AluSx SINE Alu 1 301 -11 2531 235 53 56 chr11 108236185 108236663 -42546890 + L1MA9 LINE L1 5799 6274 -38 1375 261 67 113 chr11 108236675 108238789 -42544764 + L1ME LINE L1 2235 4252 -1894 324 299 129 22 chr11 108238899 108239123 -42544430 + L1ME LINE L1 4981 5228 -918 21 82 0 0 chr11 108239135 108239184 -42544369 + AT_rich Low_complexity Low_complexity 1 49 0 356 249 127 32 chr11 108239209 108239510 -42544043 + L1ME LINE L1 5236 5573 -589 202 319 0 0 chr11 108239801 108239892 -42543661 + A-rich Low_complexity Low_complexity 1 91 0 2354 87 3 0 chr11 108239903 108240203 -42543350 + AluSp SINE Alu 1 301 -12 478 301 79 27 chr11 108240226 108240486 -42543067 + L1 LINE L1 2133 2419 -3727 2205 102 0 3 chr11 108240486 108240780 -42542773 + AluSc SINE Alu 1 293 -16 478 301 79 27 chr11 108240780 108240888 -42542665 + L1 LINE L1 2419 2520 -3626 233 293 51 38 chr11 108240901 108241058 -42542495 + L1 LINE L1 2601 2759 -3387 29 0 0 0 chr11 108241993 108242022 -42541531 + AT_rich Low_complexity Low_complexity 1 29 0 402 284 0 12 chr11 108242755 108242952 -42540601 + L1 LINE L1 2645 2836 -3310 1212 104 12 47 chr11 108243550 108243784 -42539769 + L1MA2 LINE L1 5970 6206 -98 253 282 118 71 chr11 108244447 108244617 -42538936 - MER5B DNA MER1_type 0 178 1 1483 138 23 11 chr11 108245056 108245316 -42538237 - Tigger5 DNA MER2_type -1 2322 2060 348 125 0 78 chr11 108245285 108245349 -42538204 - Tigger5 DNA MER2_type -2088 235 177 * 257 234 52 39 chr11 108245406 108245483 -42538070 + L2 LINE L2 3236 3313 0 6046 67 8 4 chr11 108245611 108246406 -42537147 + L1PA7 LINE L1 5352 6149 -5 2067 110 32 0 chr11 108246450 108246732 -42536821 - AluSx SINE Alu -15 297 7 252 322 44 0 chr11 108246769 108246859 -42536694 + MER5A DNA MER1_type 2 95 -94 330 291 134 0 chr11 108247562 108247689 -42535864 - MIR SINE MIR -118 144 1 351 0 0 0 chr11 108247847 108247886 -42535667 + (TG)n Simple_repeat Simple_repeat 2 40 0 1137 211 32 8 chr11 108248099 108248350 -42535203 + MLT2D LTR ERVL 1 257 -157 1504 204 68 51 chr11 108248481 108248847 -42534706 + MLT2D LTR ERVL 3 535 -19 324 0 0 0 chr11 108248963 108248999 -42534554 + (CA)n Simple_repeat Simple_repeat 1 36 0 267 79 26 0 chr11 108249004 108249042 -42534511 + MLT2C2 LTR ERVL 424 462 -2 201 326 95 21 chr11 108249227 108249322 -42534231 + L2 LINE L2 3169 3270 -2 472 283 0 81 chr11 108250593 108250766 -42532787 - MIR SINE MIR -16 246 88 19284 104 19 21 chr11 108250912 108254749 -42528804 - L1PA8 LINE L1 -1 6171 2347 21 0 0 0 chr11 108255358 108255379 -42528174 + AT_rich Low_complexity Low_complexity 1 21 0 1792 282 49 18 chr11 108256364 108257165 -42526388 - L1M4c LINE L1 -4027 2536 1711 2079 113 3 3 chr11 108257365 108257657 -42525896 - AluSg SINE Alu -18 292 1 24 0 0 0 chr11 108257660 108257684 -42525869 + AT_rich Low_complexity Low_complexity 1 24 0 236 291 60 76 chr11 108257712 108257908 -42525645 - L1M4c LINE L1 -5008 1555 1357 1975 172 34 8 chr11 108257908 108258263 -42525290 - THE1B LTR MaLR 0 364 1 236 291 60 76 chr11 108258263 108258489 -42525064 - L1M4c LINE L1 -5206 1357 992 5935 177 8 23 chr11 108258504 108260326 -42523227 - L1PA12 LINE L1 -1 6167 4382 1774 149 21 51 chr11 108260326 108260701 -42522852 + THE1B LTR MaLR 1 364 0 5935 177 8 23 chr11 108260701 108260885 -42522668 - L1PA12 LINE L1 -1786 4382 4197 21 0 0 0 chr11 108261184 108261205 -42522348 + AT_rich Low_complexity Low_complexity 1 21 0 1335 146 89 12 chr11 108262106 108262353 -42521200 + THE1C LTR MaLR 110 375 0 1865 152 25 25 chr11 108262608 108262970 -42520583 - L1MA4A LINE L1 -19 6284 5923 235 322 84 15 chr11 108263062 108263397 -42520156 - L1M4 LINE L1 -2349 3797 3440 1379 238 58 6 chr11 108263479 108263823 -42519730 + MLT1A1 LTR MaLR 1 362 -3 415 176 66 0 chr11 108265563 108265654 -42517899 + MER31-int LTR ERV1 871 967 -3969 2009 102 27 10 chr11 108267078 108267372 -42516181 - AluSq SINE Alu -14 299 1 1652 186 17 130 chr11 108267664 108268132 -42515421 + MSTB LTR MaLR 1 415 -11 302 182 15 0 chr11 108268532 108268598 -42514955 + CT-rich Low_complexity Low_complexity 5 71 0 477 281 161 52 chr11 108269003 108269270 -42514283 - L2 LINE L2 -345 2969 2674 202 236 125 0 chr11 108269272 108269344 -42514209 - L2 LINE L2 -1348 1966 1886 363 271 49 16 chr11 108269517 108269639 -42513914 + MIR SINE MIR 116 241 -21 290 350 25 6 chr11 108269656 108269819 -42513734 - L2 LINE L2 -1668 1646 1481 209 176 0 0 chr11 108271013 108271047 -42512506 + (TG)n Simple_repeat Simple_repeat 1 34 0 722 273 72 5 chr11 108271110 108271319 -42512234 - MER58A DNA MER1_type -1 223 1 1756 327 83 25 chr11 108271501 108272161 -42511392 + HERV16 LTR ERVL 1889 2622 -2374 2830 169 29 6 chr11 108272161 108272184 -42511369 + L1MB1 LINE L1 5626 5647 -521 212 0 36 0 chr11 108272184 108272212 -42511341 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2830 169 29 6 chr11 108272212 108272714 -42510839 + L1MB1 LINE L1 5647 6163 -5 1756 327 83 25 chr11 108272714 108272991 -42510562 + HERV16 LTR ERVL 2622 2881 -2115 1097 209 116 37 chr11 108273472 108273740 -42509813 - AluJb SINE Alu -13 289 1 1499 172 53 113 chr11 108274734 108275108 -42508445 + MLT2A2 LTR ERVL 1 319 -235 1886 91 26 0 chr11 108275108 108275372 -42508181 - AluSc SINE Alu -4 305 35 1499 172 53 113 chr11 108275372 108275595 -42507958 + MLT2A2 LTR ERVL 319 554 0 1149 46 13 7 chr11 108275833 108275984 -42507569 - AluYb8 SINE Alu -166 152 1 476 236 85 18 chr11 108277858 108278023 -42505530 - MIR SINE MIR -49 213 38 2621 241 9 13 chr11 108278059 108278928 -42504625 - L1PA15-16 LINE L1 -3253 3596 2735 5709 197 32 4 chr11 108278935 108279378 -42504175 + L1PA16 LINE L1 3951 4380 -1786 234 0 0 0 chr11 108279378 108279404 -42504149 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5709 197 32 4 chr11 108279404 108281114 -42502439 + L1PA16 LINE L1 4380 6164 -2 1715 100 142 0 chr11 108281358 108281619 -42501934 + AluSx SINE Alu 2 299 -3 23 33 0 0 chr11 108281619 108281649 -42501904 + AT_rich Low_complexity Low_complexity 1 30 0 300 211 18 0 chr11 108281758 108281815 -42501738 - LTR54B LTR ERV1 -440 58 1 2366 82 7 0 chr11 108282048 108282354 -42501199 - AluSc SINE Alu -1 308 1 31 0 0 0 chr11 108283836 108283867 -42499686 + AT_rich Low_complexity Low_complexity 1 31 0 1734 189 0 0 chr11 108283867 108284148 -42499405 - AluJb SINE Alu -27 285 5 8929 173 27 8 chr11 108284236 108286922 -42496631 + L1PA15 LINE L1 3424 6164 -1 2127 108 3 3 chr11 108287724 108288019 -42495534 + AluSc SINE Alu 1 295 -14 428 238 67 36 chr11 108288343 108288536 -42495017 - MER20B DNA MER1_type -50 733 535 229 363 59 0 chr11 108288636 108288738 -42494815 + LTR33 LTR ERVL 90 197 -324 1476 180 11 21 chr11 108288749 108289033 -42494520 - AluJo SINE Alu -27 285 5 348 346 62 14 chr11 108289104 108289315 -42494238 + LTR33 LTR ERVL 275 495 -26 1445 139 9 0 chr11 108289781 108289996 -42493557 + AluSg/x SINE Alu 85 301 -9 1855 104 21 11 chr11 108289997 108290276 -42493277 + AluSp SINE Alu 2 283 -30 191 241 63 51 chr11 108290953 108291032 -42492521 + MIR SINE MIR 156 235 -27 205 353 66 29 chr11 108291233 108291369 -42492184 + MIR SINE MIR 46 186 -76 25 90 0 0 chr11 108291477 108291544 -42492009 + AT_rich Low_complexity Low_complexity 1 67 0 1261 178 4 56 chr11 108291821 108292130 -42491423 + AluJo SINE Alu 28 322 0 21 0 0 0 chr11 108292139 108292160 -42491393 + AT_rich Low_complexity Low_complexity 1 21 0 347 333 8 39 chr11 108292382 108292511 -42491042 + L2 LINE L2 2548 2672 -642 37 62 0 0 chr11 108292527 108292592 -42490961 + AT_rich Low_complexity Low_complexity 1 65 0 22 35 0 0 chr11 108292681 108292710 -42490843 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 108293500 108293521 -42490032 + AT_rich Low_complexity Low_complexity 1 21 0 2160 185 47 7 chr11 108293693 108294136 -42489417 - LOR1b LTR ERV1 0 461 1 3940 131 38 39 chr11 108294979 108296284 -42487269 - pTR5 LTR ERV1 0 2468 1524 25 0 0 0 chr11 108296336 108296361 -42487192 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr11 108296470 108296498 -42487055 + AT_rich Low_complexity Low_complexity 1 28 0 593 231 28 37 chr11 108296670 108296886 -42486667 + LTR37B LTR ERV1 214 427 -41 22 0 0 0 chr11 108297780 108297802 -42485751 + AT_rich Low_complexity Low_complexity 1 22 0 1567 189 4 4 chr11 108297802 108298082 -42485471 - AluJo SINE Alu -22 290 11 1365 203 9 38 chr11 108298862 108299177 -42484376 - AluSx SINE Alu -6 306 1 246 32 0 0 chr11 108299178 108299209 -42484344 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1898 124 3 60 chr11 108299215 108299546 -42484007 + AluSx SINE Alu 1 312 0 277 274 38 89 chr11 108300743 108300900 -42482653 + MER31-int LTR ERV1 3952 4100 -836 530 267 23 61 chr11 108301258 108301299 -42482254 + LTR37B LTR ERV1 198 239 -229 2198 102 0 0 chr11 108301299 108301619 -42481934 + AluSg SINE Alu 1 320 0 530 267 23 61 chr11 108301619 108301837 -42481716 + LTR37B LTR ERV1 239 449 -19 421 239 77 57 chr11 108301837 108302084 -42481469 + L1ME2 LINE L1 5397 5648 -514 566 233 141 3 chr11 108302144 108302342 -42481211 + L1ME2 LINE L1 5822 6048 -116 360 302 29 58 chr11 108302673 108302812 -42480741 + L1MC4a LINE L1 5603 5737 -384 269 276 31 24 chr11 108302813 108302940 -42480613 + L1MC4a LINE L1 5839 5966 -1842 316 280 8 109 chr11 108303701 108303940 -42479613 - MLT1J LTR MaLR -167 344 130 1783 119 47 18 chr11 108305060 108305360 -42478193 - AluSq SINE Alu 0 308 1 508 309 87 4 chr11 108305420 108305650 -42477903 + MER46C DNA MER2_type 79 327 -11 195 258 146 11 chr11 108307073 108307162 -42476391 + MIR SINE MIR 81 181 -81 461 296 30 0 chr11 108307774 108307909 -42475644 - MIR SINE MIR -4 258 120 23 0 0 0 chr11 108308753 108308776 -42474777 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr11 108309904 108309927 -42473626 + (GA)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr11 108310039 108310068 -42473485 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr11 108310387 108310425 -42473128 + AT_rich Low_complexity Low_complexity 1 38 0 6372 83 10 0 chr11 108310928 108312290 -42471263 - L1PA8A LINE L1 0 6131 4770 8486 196 41 18 chr11 108312290 108312370 -42471183 + L1P LINE L1 3149 3226 -2920 2157 114 3 0 chr11 108312370 108312676 -42470877 + AluSg SINE Alu 1 307 -3 8486 196 41 18 chr11 108312676 108314242 -42469311 + L1P LINE L1 3226 4833 -1313 23 0 0 0 chr11 108314343 108314366 -42469187 + AT_rich Low_complexity Low_complexity 1 23 0 547 244 80 57 chr11 108314476 108314775 -42468778 - L1ME3A LINE L1 -6 6164 5859 3603 211 35 6 chr11 108314817 108315699 -42467854 + L1 LINE L1 4427 5334 -812 739 312 67 30 chr11 108315706 108315767 -42467786 - L1ME3A LINE L1 -747 5399 5342 2083 158 22 3 chr11 108315767 108316122 -42467431 - THE1B LTR MaLR -2 362 1 739 312 67 30 chr11 108316122 108316701 -42466852 - L1ME3A LINE L1 -804 5342 4735 599 264 0 0 chr11 108316738 108316867 -42466686 - FLAM_A SINE Alu -4 129 1 1260 211 65 45 chr11 108316868 108317015 -42466538 - L1MA9 LINE L1 -62 6250 6107 1185 214 86 16 chr11 108317015 108317328 -42466225 + MER44D DNA MER2_type 2 606 -3 1260 211 65 45 chr11 108317328 108317598 -42465955 - L1MA9 LINE L1 -205 6107 5825 2454 206 16 64 chr11 108317598 108318211 -42465342 - MER52A LTR ERV1 0 1755 1172 3474 194 170 68 chr11 108318276 108319400 -42464153 - MER52A LTR ERV1 -406 1349 4 1567 221 8 20 chr11 108319400 108319638 -42463915 - L1MA9 LINE L1 -484 5828 5594 2006 190 53 12 chr11 108319638 108320049 -42463504 - MSTA LTR MaLR 0 428 1 1567 221 8 20 chr11 108320049 108320163 -42463390 - L1MA9 LINE L1 -718 5594 5480 894 188 38 0 chr11 108320171 108320214 -42463339 - AluJo SINE Alu -137 175 135 351 0 0 0 chr11 108320214 108320253 -42463300 + (TTA)n Simple_repeat Simple_repeat 1 39 0 894 188 38 0 chr11 108320253 108320369 -42463184 - AluJo SINE Alu -177 135 10 1254 146 10 9 chr11 108320375 108320639 -42462914 - L1MA9 LINE L1 -743 5403 5222 1005 148 142 0 chr11 108320809 108320992 -42462561 + MER2 DNA MER2_type 2 210 -135 22 70 0 0 chr11 108320992 108321035 -42462518 + AT_rich Low_complexity Low_complexity 1 43 0 210 37 0 0 chr11 108321109 108321136 -42462417 + (TC)n Simple_repeat Simple_repeat 1 27 0 474 18 0 0 chr11 108321139 108321194 -42462359 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 180 77 0 0 chr11 108321264 108321290 -42462263 + (CA)n Simple_repeat Simple_repeat 1 26 0 2079 114 0 0 chr11 108321897 108322201 -42461352 - AluY SINE Alu 0 304 1 25 0 0 0 chr11 108322605 108322630 -42460923 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr11 108322669 108322711 -42460842 + AT_rich Low_complexity Low_complexity 1 42 0 544 235 39 25 chr11 108322738 108322942 -42460611 - L1M4 LINE L1 -1487 4659 4453 238 325 72 0 chr11 108322961 108323044 -42460509 + L2 LINE L2 3225 3313 0 445 282 14 19 chr11 108323711 108323864 -42459689 - MIR SINE MIR -39 223 75 21 0 0 0 chr11 108323924 108323945 -42459608 + AT_rich Low_complexity Low_complexity 1 21 0 521 30 15 0 chr11 108324141 108324208 -42459345 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 856 275 75 34 chr11 108324208 108324593 -42458960 - MLT2D LTR ERVL -10 404 4 674 30 40 0 chr11 108324600 108324701 -42458852 + (TCTA)n Simple_repeat Simple_repeat 4 108 0 247 270 30 10 chr11 108325310 108325410 -42458143 - L1MA7 LINE L1 0 6291 6190 252 0 0 0 chr11 108325411 108325439 -42458114 + (TG)n Simple_repeat Simple_repeat 1 28 0 6504 192 26 9 chr11 108325439 108327730 -42455823 - L1MA7 LINE L1 -140 6151 3821 657 278 98 38 chr11 108327710 108328243 -42455310 - L1M4 LINE L1 -2587 3559 2995 * 810 187 12 35 chr11 108328299 108328470 -42455083 + AluJb SINE Alu 140 306 -6 201 211 11 22 chr11 108328626 108328716 -42454837 + CT-rich Low_complexity Low_complexity 2 90 0 477 284 86 38 chr11 108328825 108329117 -42454436 - L1MC5 LINE L1 -733 7228 6923 618 218 12 47 chr11 108329279 108329449 -42454104 - L1MD2 LINE L1 -13 6346 6183 531 326 32 14 chr11 108329455 108329738 -42453815 - L1MC4 LINE L1 -948 6945 6572 281 359 48 10 chr11 108330107 108330316 -42453237 + LTR33 LTR ERVL 305 521 0 2276 102 0 0 chr11 108330567 108330862 -42452691 + AluSx SINE Alu 1 295 -17 286 265 36 0 chr11 108331396 108331479 -42452074 - L3 LINE CR1 -89 1488 1403 812 318 29 26 chr11 108332007 108332356 -42451197 + L1M3b LINE L1 500 849 -5930 229 253 81 0 chr11 108332353 108332440 -42451113 + L1M3b LINE L1 2474 2567 -4282 * 2952 242 15 24 chr11 108332441 108332607 -42450946 + L1M1 LINE L1 2991 3157 -4408 2188 103 0 0 chr11 108332607 108332907 -42450646 + AluSc SINE Alu 1 300 -9 2952 242 15 24 chr11 108332907 108334024 -42449529 + L1M1 LINE L1 3157 4262 -3303 322 333 0 0 chr11 108334482 108334599 -42448954 - LTR33 LTR ERVL -396 125 9 548 245 126 49 chr11 108334658 108334970 -42448583 + MSTD LTR MaLR 1 384 -12 425 214 56 28 chr11 108335069 108335247 -42448306 + MER53 DNA DNA 4 186 -3 208 191 21 0 chr11 108335303 108335350 -42448203 + (TAA)n Simple_repeat Simple_repeat 3 50 0 452 292 104 7 chr11 108335352 108335496 -42448057 + MER63A DNA MER1_type 53 210 0 186 71 0 0 chr11 108335506 108335534 -42448019 + (T)n Simple_repeat Simple_repeat 1 28 0 689 145 8 32 chr11 108335637 108335761 -42447792 + L1PB4 LINE L1 5676 5796 -360 224 231 11 33 chr11 108335764 108335816 -42447737 + (TA)n Simple_repeat Simple_repeat 2 53 -37 1778 200 5 21 chr11 108335816 108336191 -42447362 + L1PB4 LINE L1 5782 6150 -6 224 231 11 33 chr11 108336191 108336229 -42447324 + (TA)n Simple_repeat Simple_repeat 53 90 0 402 288 34 23 chr11 108336658 108336835 -42446718 + L1P LINE L1 4876 5054 -1092 336 377 53 24 chr11 108337071 108337482 -42446071 + L1ME LINE L1 5297 5719 -451 3119 232 81 31 chr11 108337487 108339001 -42444552 + L1M4b LINE L1 726 2320 -4639 2349 147 9 54 chr11 108339039 108339487 -42444066 - MSTA LTR MaLR 0 428 1 1952 94 3 88 chr11 108339878 108340207 -42443346 + AluSx SINE Alu 1 301 -11 1000 281 45 33 chr11 108340319 108341112 -42442441 + L1M4b LINE L1 2732 3497 -3460 782 209 6 6 chr11 108341126 108341284 -42442269 + AluJo SINE Alu 1 158 -154 410 71 71 0 chr11 108341284 108341354 -42442199 - MLT2A2 LTR ERVL -378 75 1 567 238 8 0 chr11 108341436 108341562 -42441991 + Alu SINE Alu 176 302 -9 774 270 185 0 chr11 108341579 108342034 -42441519 + L1M4b LINE L1 3530 4068 -2889 1181 195 133 28 chr11 108342086 108342409 -42441144 + L1MB8 LINE L1 5643 5999 -179 711 127 42 0 chr11 108342410 108342528 -42441025 - MLT2A2 LTR ERVL 0 453 331 * 730 92 37 0 chr11 108342522 108342631 -42440922 - MLT2A2 LTR ERVL -340 113 1 606 191 7 7 chr11 108342691 108342827 -42440726 + L1MB8 LINE L1 6043 6178 0 2041 101 0 36 chr11 108343167 108343475 -42440078 - AluSc SINE Alu -12 297 1 2005 124 7 0 chr11 108343822 108344104 -42439449 + AluSq SINE Alu 1 284 -29 234 0 0 0 chr11 108344107 108344133 -42439420 + (TAA)n Simple_repeat Simple_repeat 3 28 0 181 224 103 35 chr11 108344184 108344242 -42439311 + MIR SINE MIR 47 108 -154 2404 68 0 16 chr11 108344347 108344657 -42438896 + AluY SINE Alu 1 305 -6 1070 166 0 0 chr11 108344812 108344987 -42438566 + AluSg/x SINE Alu 121 295 -17 2122 107 17 3 chr11 108345362 108345653 -42437900 + AluSx SINE Alu 1 295 -17 6827 35 4 0 chr11 108345830 108346666 -42436887 - L1P LINE L1 -3492 2654 1816 * 9254 35 1 2 chr11 108346655 108347811 -42435742 + L1P LINE L1 2656 3810 -2336 23 0 0 0 chr11 108348206 108348229 -42435324 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr11 108348272 108348307 -42435246 + AT_rich Low_complexity Low_complexity 1 35 0 8437 242 58 40 chr11 108348489 108348661 -42434892 + L1MB3 LINE L1 4 171 -6248 285 29 0 0 chr11 108348661 108348695 -42434858 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 8437 242 58 40 chr11 108348695 108350025 -42433528 + L1MB3 LINE L1 171 1476 -4943 1930 112 0 4 chr11 108350025 108350294 -42433259 - AluSq SINE Alu -7 306 39 8437 242 58 40 chr11 108350294 108350359 -42433194 + L1MB3 LINE L1 1476 1538 -4881 253 114 0 0 chr11 108350359 108350394 -42433159 - AluSq SINE Alu -264 35 1 8437 242 58 40 chr11 108350394 108352771 -42430782 + L1MB3 LINE L1 1538 3871 -2548 2077 129 0 3 chr11 108352771 108353073 -42430480 + AluSx SINE Alu 6 306 -6 8437 242 58 40 chr11 108353073 108353484 -42430069 + L1MB3 LINE L1 3871 4273 -2146 360 43 0 0 chr11 108353484 108353530 -42430023 + (CA)n Simple_repeat Simple_repeat 1 46 0 8437 242 58 40 chr11 108353530 108355434 -42428119 + L1MB3 LINE L1 4273 6419 0 2090 221 70 21 chr11 108355914 108356497 -42427056 + L1MC3 LINE L1 6084 6695 -1090 1655 203 27 0 chr11 108356513 108356848 -42426705 + L1MC3 LINE L1 7169 7512 -273 398 83 33 0 chr11 108356957 108357054 -42426499 + L1PA6 LINE L1 6072 6170 0 299 264 0 11 chr11 108357283 108357374 -42426179 + L1MC4 LINE L1 6614 6703 -1339 227 340 49 27 chr11 108357381 108357566 -42425987 - MLT1J LTR MaLR 0 511 323 9328 62 101 7 chr11 108357667 108358984 -42424569 + L1P LINE L1 6 1446 -4700 12665 26 4 4 chr11 108359084 108360959 -42422594 - L1P1 LINE L1 -391 5764 3890 1148 92 0 0 chr11 108361059 108361211 -42422342 - AluSg/x SINE Alu -40 272 121 2028 122 0 21 chr11 108361222 108361535 -42422018 - AluSc SINE Alu 0 307 1 771 262 47 52 chr11 108361535 108361923 -42421630 - L1M4 LINE L1 -2104 4042 3655 2315 94 0 0 chr11 108361923 108362220 -42421333 + AluSx SINE Alu 1 297 -15 771 262 47 52 chr11 108362220 108362255 -42421298 - L1M4 LINE L1 -2491 3655 3621 3594 169 11 8 chr11 108362410 108363098 -42420455 - HUERS-P2 LTR ERV1 -1395 1693 1150 680 272 77 50 chr11 108363103 108363426 -42420127 - L1MEc LINE L1 -6012 384 53 318 26 0 0 chr11 108363840 108363879 -42419674 + (CA)n Simple_repeat Simple_repeat 2 40 0 276 178 56 0 chr11 108363883 108363990 -42419563 + (TA)n Simple_repeat Simple_repeat 2 114 0 1992 142 0 0 chr11 108365850 108366145 -42417408 + AluSx SINE Alu 1 295 -17 285 304 52 9 chr11 108367590 108367705 -42415848 + L2 LINE L2 3193 3312 -1 21 0 0 0 chr11 108368757 108368778 -42414775 + AT_rich Low_complexity Low_complexity 1 21 0 379 371 60 20 chr11 108369166 108369414 -42414139 - LTR16A LTR ERVL -174 276 19 460 342 182 10 chr11 108369538 108370039 -42413514 + MLT1G LTR MaLR 1 590 0 29 0 0 0 chr11 108370908 108370937 -42412616 + AT_rich Low_complexity Low_complexity 1 29 0 2321 84 0 3 chr11 108371409 108371706 -42411847 + AluSq SINE Alu 4 299 -14 288 53 0 0 chr11 108371724 108371762 -42411791 + (CA)n Simple_repeat Simple_repeat 1 38 0 23 33 0 0 chr11 108372038 108372068 -42411485 + AT_rich Low_complexity Low_complexity 1 30 0 2216 82 0 10 chr11 108372915 108373218 -42410335 - AluY SINE Alu -11 300 1 1802 120 62 0 chr11 108373452 108373728 -42409825 + AluSx SINE Alu 1 293 -19 601 267 50 50 chr11 108373828 108374103 -42409450 - L1MC5 LINE L1 -46 7915 7638 1550 150 25 102 chr11 108374103 108374464 -42409089 + MER1B DNA MER1_type 4 336 -1 601 267 50 50 chr11 108374464 108374551 -42409002 - L1MC5 LINE L1 -322 7639 7553 226 250 266 0 chr11 108375878 108375942 -42407611 - MER5B DNA MER1_type 0 178 98 2158 116 0 3 chr11 108376052 108376354 -42407199 - AluSx SINE Alu -9 303 3 198 0 0 0 chr11 108377339 108377361 -42406192 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 211 329 109 19 chr11 108377361 108377562 -42405991 + MIR SINE MIR 38 260 -2 223 323 69 60 chr11 108377671 108377903 -42405650 - L2 LINE L2 -85 3228 2995 216 0 0 0 chr11 108377939 108377963 -42405590 + (TG)n Simple_repeat Simple_repeat 2 25 0 25 31 0 0 chr11 108379023 108379055 -42404498 + AT_rich Low_complexity Low_complexity 1 32 0 32 0 0 0 chr11 108379607 108379639 -42403914 + AT_rich Low_complexity Low_complexity 1 32 0 209 388 15 0 chr11 108380280 108380347 -42403206 - L3 LINE CR1 -1494 83 16 1753 112 7 54 chr11 108380724 108381018 -42402535 - AluSx SINE Alu -32 280 1 395 308 145 87 chr11 108381593 108382109 -42401444 - L2 LINE L2 -581 2733 2188 596 237 159 30 chr11 108382262 108382557 -42400996 + Charlie4a DNA MER1_type 172 504 -4 235 291 12 12 chr11 108382625 108382711 -42400842 - L2 LINE L2 -1216 2098 2013 312 315 9 0 chr11 108382977 108383088 -42400465 + L1M4 LINE L1 4280 4391 -1755 827 289 105 18 chr11 108383088 108383420 -42400133 + MLT1A1 LTR MaLR 13 373 -1 2217 232 46 28 chr11 108383429 108384140 -42399413 + L1M4 LINE L1 4439 5162 -984 398 357 57 30 chr11 108384206 108384576 -42398977 + L2 LINE L2 1772 2151 -1163 2232 88 0 23 chr11 108384783 108385089 -42398464 - AluSg SINE Alu -11 299 1 10746 192 44 9 chr11 108385106 108385673 -42397880 - L1PB1 LINE L1 0 6867 6321 2193 123 0 0 chr11 108385673 108385966 -42397587 - AluY SINE Alu -18 293 1 10746 192 44 9 chr11 108385966 108391873 -42391680 - L1PB1 LINE L1 -546 6321 7 270 385 26 0 chr11 108393144 108393261 -42390292 - MIR3 SINE MIR -48 160 41 253 350 121 15 chr11 108393972 108394215 -42389338 + L2 LINE L2 2781 3046 -226 1624 181 136 36 chr11 108394308 108394638 -42388915 - LTR54B LTR ERV1 -5 493 105 2068 123 0 7 chr11 108394638 108394939 -42388614 + AluSg SINE Alu 1 299 -11 1624 181 136 36 chr11 108394939 108395056 -42388497 - LTR54B LTR ERV1 -393 105 1 23 33 0 0 chr11 108395059 108395089 -42388464 + AT_rich Low_complexity Low_complexity 1 30 0 24 67 0 0 chr11 108395551 108395596 -42387957 + AT_rich Low_complexity Low_complexity 1 45 0 2092 118 7 7 chr11 108395743 108396048 -42387505 + AluSp SINE Alu 1 305 -8 21 0 0 0 chr11 108397451 108397472 -42386081 + AT_rich Low_complexity Low_complexity 1 21 0 186 250 0 0 chr11 108397952 108398008 -42385545 + CT-rich Low_complexity Low_complexity 3 58 0 189 0 0 0 chr11 108398427 108398448 -42385105 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 684 120 0 0 chr11 108398449 108398598 -42384955 - AluSp/q SINE Alu 0 336 188 2109 114 0 26 chr11 108399489 108399795 -42383758 - AluY SINE Alu -13 298 1 345 61 20 0 chr11 108399912 108399961 -42383592 - MADE1 DNA Mariner -30 50 1 239 323 90 0 chr11 108400520 108400721 -42382832 + L1MC4a LINE L1 3743 3961 -2185 322 300 95 83 chr11 108400951 108401204 -42382349 + L1MC4a LINE L1 5719 5974 -1834 2318 74 0 26 chr11 108401330 108401642 -42381911 - AluY SINE Alu -3 308 5 28 29 0 0 chr11 108401722 108401757 -42381796 + AT_rich Low_complexity Low_complexity 1 35 0 435 232 0 54 chr11 108404388 108404500 -42379053 - MER5A DNA MER1_type -80 109 4 253 340 72 0 chr11 108405058 108405155 -42378398 - MIR SINE MIR -110 152 49 724 243 7 0 chr11 108405243 108405387 -42378166 - LTR26B LTR ERV1 0 531 387 363 62 78 31 chr11 108405387 108405451 -42378102 + MER4A LTR ERV1 32 98 -566 1727 125 172 71 chr11 108405451 108405818 -42377735 + MER4A LTR ERV1 261 664 0 303 196 54 27 chr11 108405905 108406017 -42377536 - L1ME LINE L1 -351 5796 5682 2061 124 0 7 chr11 108406132 108406431 -42377122 + AluSq SINE Alu 1 297 -16 2120 78 0 0 chr11 108406541 108406809 -42376744 + AluY SINE Alu 39 306 -5 304 240 101 42 chr11 108406813 108407030 -42376523 - L1ME LINE L1 -750 5379 5150 2081 174 9 0 chr11 108407523 108407868 -42375685 + MER7A DNA MER2_type 1 346 0 22 35 0 0 chr11 108408352 108408381 -42375172 + AT_rich Low_complexity Low_complexity 1 29 0 21 89 0 0 chr11 108408449 108408505 -42375048 + AT_rich Low_complexity Low_complexity 1 56 0 400 298 66 31 chr11 108408637 108408926 -42374627 - L1ME LINE L1 -2060 4069 3771 2054 125 0 3 chr11 108409433 108409736 -42373817 + AluY SINE Alu 1 302 -9 1121 136 0 0 chr11 108409739 108409901 -42373652 + AluSg/x SINE Alu 128 289 -23 26 88 0 0 chr11 108409901 108409969 -42373584 + AT_rich Low_complexity Low_complexity 1 68 0 339 309 105 24 chr11 108409997 108410207 -42373346 - L1ME LINE L1 -3168 2961 2735 1943 221 107 54 chr11 108410675 108411459 -42372094 + LTR1B LTR ERV1 1 826 0 1898 73 0 87 chr11 108411524 108411812 -42371741 - AluY SINE Alu -15 296 34 309 211 48 10 chr11 108412409 108412513 -42371040 - L1ME LINE L1 -4906 1223 1116 433 272 30 6 chr11 108412631 108412800 -42370753 - L1ME LINE L1 -4982 1137 965 7478 36 0 0 chr11 108412859 108414341 -42369212 + L1PA5 LINE L1 4660 6147 -7 432 0 0 0 chr11 108414410 108414458 -42369095 + (TA)n Simple_repeat Simple_repeat 2 49 0 218 125 25 0 chr11 108414720 108414760 -42368793 + T-rich Low_complexity Low_complexity 2 42 0 357 368 121 57 chr11 108414769 108415350 -42368203 - L1ME LINE L1 -5500 619 2 193 313 25 25 chr11 108415358 108415438 -42368115 - L2 LINE L2 -570 2744 2665 489 183 119 0 chr11 108417195 108417321 -42366232 - L1MA8 LINE L1 -7 6284 6144 * 687 117 17 42 chr11 108417317 108417411 -42366142 + L1P4 LINE L1 5687 5780 -386 1833 87 4 0 chr11 108417411 108417671 -42365882 + AluSp SINE Alu 54 314 0 687 117 17 42 chr11 108417671 108417695 -42365858 + L1P4 LINE L1 5780 5803 -363 * 6659 198 24 11 chr11 108417672 108418287 -42365266 + L1PA15 LINE L1 3781 4386 -1779 189 0 0 0 chr11 108418287 108418308 -42365245 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 6659 198 24 11 chr11 108418308 108419370 -42364183 + L1PA15 LINE L1 4386 5490 -675 2242 101 0 3 chr11 108419370 108419678 -42363875 + AluSq SINE Alu 1 307 -6 6659 198 24 11 chr11 108419678 108420360 -42363193 + L1PA15 LINE L1 5490 6161 -4 356 248 185 47 chr11 108422827 108423081 -42360472 + HsTC2b DNA Tc2 66 354 -561 886 201 42 38 chr11 108423096 108423385 -42360168 + MER33 DNA MER1_type 35 324 0 497 226 50 77 chr11 108423389 108423550 -42360003 + HsTC2b DNA Tc2 348 512 -1386 806 251 27 9 chr11 108423550 108423769 -42359784 + MER58A DNA MER1_type 2 224 0 497 226 50 77 chr11 108423769 108423828 -42359725 + HsTC2b DNA Tc2 512 738 -180 1430 261 88 12 chr11 108424327 108425066 -42358487 + L1ME1 LINE L1 5094 5894 -272 * 1979 209 80 25 chr11 108424799 108425312 -42358241 + L1MB2 LINE L1 5628 6168 -3 371 292 46 50 chr11 108425497 108425757 -42357796 + L1ME LINE L1 5272 5530 -636 705 355 31 18 chr11 108425918 108426309 -42357244 - LTR33 LTR ERVL -102 419 24 220 324 10 20 chr11 108426681 108426783 -42356770 + CT-rich Low_complexity Low_complexity 3 103 0 243 286 0 0 chr11 108427254 108427338 -42356215 - L1MC4 LINE L1 -1339 6703 6620 31 0 0 0 chr11 108427804 108427835 -42355718 + AT_rich Low_complexity Low_complexity 1 31 0 23 68 0 0 chr11 108428153 108428197 -42355356 + AT_rich Low_complexity Low_complexity 1 44 0 218 203 0 16 chr11 108432355 108432419 -42351134 + (TA)n Simple_repeat Simple_repeat 2 64 0 28 61 0 0 chr11 108432434 108432483 -42351070 + AT_rich Low_complexity Low_complexity 1 49 0 2192 84 11 0 chr11 108432483 108432767 -42350786 - AluY SINE Alu -24 287 1 345 62 0 0 chr11 108433218 108433266 -42350287 + (CA)n Simple_repeat Simple_repeat 2 49 0 1590 159 4 0 chr11 108433519 108433764 -42349789 + AluSx SINE Alu 1 246 -66 7572 193 113 24 chr11 108433764 108435373 -42348180 + MER52A LTR ERV1 3 1754 -1 387 149 0 68 chr11 108435373 108435436 -42348117 + Alu SINE Alu 244 301 0 230 250 36 0 chr11 108435472 108435528 -42348025 + HAL1 LINE L1 407 464 -2043 2022 199 28 5 chr11 108436141 108436529 -42347024 + MER57A LTR ERV1 7 403 0 201 167 0 0 chr11 108436646 108436682 -42346871 + A-rich Low_complexity Low_complexity 1 36 0 2008 127 7 0 chr11 108437149 108437462 -42346091 - AluSx SINE Alu 0 312 1 277 311 191 29 chr11 108437635 108437876 -42345677 + HAL1 LINE L1 672 951 -1556 192 77 0 0 chr11 108438535 108438561 -42344992 + (CAAAAA)n Simple_repeat Simple_repeat 5 30 0 345 269 53 64 chr11 108438761 108439043 -42344510 + L1M4 LINE L1 4175 4453 -1693 646 301 190 19 chr11 108439050 108439488 -42344065 + MLT1G1 LTR MaLR 16 593 -2 506 262 43 55 chr11 108439580 108439836 -42343717 + L1ME3A LINE L1 5888 6140 -30 930 122 0 0 chr11 108440222 108440353 -42343200 + AluSc SINE Alu 1 131 -178 5834 154 11 35 chr11 108440557 108440867 -42342686 + L1PB1 LINE L1 5010 5326 -825 1883 130 7 0 chr11 108440867 108441136 -42342417 + AluSq SINE Alu 27 297 -16 5834 154 11 35 chr11 108441136 108441602 -42341951 + L1PB1 LINE L1 5326 5742 -409 2267 70 31 0 chr11 108441602 108441888 -42341665 + AluY SINE Alu 1 295 -16 5834 154 11 35 chr11 108441888 108442286 -42341267 + L1PB1 LINE L1 5742 6148 -3 272 163 0 0 chr11 108442306 108442349 -42341204 + L1ME3A LINE L1 5522 5564 -606 949 224 48 80 chr11 108442398 108442750 -42340803 - MLT1A2 LTR MaLR -28 346 6 963 326 57 17 chr11 108442752 108443334 -42340219 + L1ME3A LINE L1 5557 6161 -9 5262 237 67 35 chr11 108443481 108446508 -42337045 + L1 LINE L1 7 4191 -2915 3970 185 10 31 chr11 108446510 108447423 -42336130 + L1 LINE L1 5367 6260 -846 500 351 100 52 chr11 108447617 108448437 -42335116 + HAL1 LINE L1 57 915 -1592 307 311 0 42 chr11 108448930 108449049 -42334504 + L1MEc LINE L1 915 1028 -5368 515 290 248 26 chr11 108449568 108450212 -42333341 + HAL1 LINE L1 1649 2435 -72 298 348 28 34 chr11 108450403 108450581 -42332972 - L2 LINE L2 -1010 2304 2128 895 189 31 77 chr11 108451203 108451425 -42332128 - MER20 DNA MER1_type -7 212 1 210 407 47 0 chr11 108452112 108452198 -42331355 - L2 LINE L2 -375 2939 2850 1148 289 32 55 chr11 108452358 108452850 -42330703 - L2 LINE L2 -849 2465 1985 333 269 115 0 chr11 108453882 108454012 -42329541 - MIR SINE MIR -14 248 104 351 281 44 0 chr11 108454035 108454170 -42329383 - L2 LINE L2 -1307 2007 1867 295 372 61 24 chr11 108454201 108454365 -42329188 - L2 LINE L2 -1394 1920 1751 2346 120 56 0 chr11 108454398 108454755 -42328798 + MER51B LTR ERV1 1 377 0 8062 148 48 21 chr11 108454755 108456210 -42327343 + MER51B-int LTR ERV1 1 1495 -6321 241 229 0 0 chr11 108456226 108456274 -42327279 + MER4A LTR ERV1 51 98 -566 632 188 78 26 chr11 108456317 108456471 -42327082 + MER4A LTR ERV1 373 534 -130 8662 100 59 3 chr11 108456474 108457901 -42325652 + MER51B-int LTR ERV1 986 3265 -4551 1928 159 53 9 chr11 108457893 108458352 -42325201 + MER51B-int LTR ERV1 1881 4693 -2303 * 8005 132 62 33 chr11 108458338 108460860 -42322693 + MER51B-int LTR ERV1 2341 7816 0 2421 95 49 22 chr11 108460861 108461149 -42322404 + MER51B LTR ERV1 1 303 -74 1934 125 0 59 chr11 108461149 108461470 -42322083 - AluSq SINE Alu -11 302 1 2421 95 49 22 chr11 108461470 108461548 -42322005 + MER51B LTR ERV1 303 377 0 662 353 116 32 chr11 108461606 108462081 -42321472 - L2 LINE L2 -1666 1648 1214 2092 113 0 0 chr11 108462081 108462373 -42321180 + AluSg SINE Alu 1 292 -18 662 353 116 32 chr11 108462373 108462796 -42320757 - L2 LINE L2 -2100 1214 675 345 380 52 52 chr11 108462811 108463251 -42320302 - L2 LINE L2 -2788 526 87 351 185 0 0 chr11 108464083 108464137 -42319416 + MER2 DNA MER2_type 286 339 -6 1756 226 109 50 chr11 108464209 108464732 -42318821 - MLT2B3 LTR ERVL 0 554 1 2217 77 39 0 chr11 108464791 108465076 -42318477 + AluSx SINE Alu 1 296 -16 316 203 101 0 chr11 108465141 108465217 -42318336 + MLT2B1 LTR ERVL 1 84 -431 1169 109 17 6 chr11 108465217 108465391 -42318162 + LOR1b LTR ERV1 1 176 -285 856 147 67 7 chr11 108465386 108465536 -42318017 + LOR1a LTR ERV1 329 487 -10 * 2011 181 11 86 chr11 108465546 108466021 -42317532 + MLT2B1 LTR ERVL 81 519 -1 231 135 0 0 chr11 108466120 108466157 -42317396 + MER65A LTR ERV1 9 45 -400 1669 158 6 44 chr11 108466169 108466486 -42317067 + AluJo SINE Alu 1 305 -7 1820 155 18 55 chr11 108466523 108466903 -42316650 + MER65A LTR ERV1 52 417 -28 239 339 28 0 chr11 108468064 108468173 -42315380 - MIR SINE MIR -73 189 78 33 56 0 0 chr11 108468881 108468935 -42314618 + AT_rich Low_complexity Low_complexity 1 54 0 1004 164 31 15 chr11 108469669 108469864 -42313689 + L1MA7 LINE L1 5876 6073 -218 312 70 0 0 chr11 108470114 108470157 -42313396 + (CA)n Simple_repeat Simple_repeat 1 43 0 368 272 14 95 chr11 108470191 108470338 -42313215 - MIR SINE MIR -108 154 20 1769 163 3 3 chr11 108470967 108471256 -42312297 + AluSx SINE Alu 1 289 -23 541 101 9 9 chr11 108471260 108471369 -42312184 + (TA)n Simple_repeat Simple_repeat 1 109 0 193 191 0 32 chr11 108472032 108472095 -42311458 + GA-rich Low_complexity Low_complexity 4 64 0 2221 156 13 5 chr11 108472454 108472826 -42310727 + THE1C LTR MaLR 1 375 0 1416 266 58 53 chr11 108472858 108473389 -42310164 + MLT1F1 LTR MaLR 1 559 -8 826 145 0 8 chr11 108473692 108473823 -42309730 - AluSg/x SINE Alu -11 299 170 933 203 16 0 chr11 108473847 108474029 -42309524 - MLT1B LTR MaLR -203 187 3 474 18 0 0 chr11 108474509 108474564 -42308989 + (TA)n Simple_repeat Simple_repeat 2 56 0 244 369 8 49 chr11 108474596 108474718 -42308835 + MIR SINE MIR 28 144 -64 196 158 49 12 chr11 108474752 108474834 -42308719 + (TA)n Simple_repeat Simple_repeat 1 85 0 2652 110 0 3 chr11 108475383 108475746 -42307807 + THE1B LTR MaLR 1 362 -2 402 57 0 0 chr11 108475924 108475977 -42307576 + (TG)n Simple_repeat Simple_repeat 2 54 0 204 305 124 38 chr11 108476077 108476182 -42307371 + MIR SINE MIR 117 230 -32 379 212 50 30 chr11 108476832 108476931 -42306622 + MLT1E2 LTR MaLR 1 101 -525 1018 74 0 7 chr11 108476933 108477068 -42306485 - MER85 DNA T2_type -5 134 1 1707 268 40 32 chr11 108477068 108477591 -42305962 + MLT1E2 LTR MaLR 100 626 0 1080 171 81 32 chr11 108477732 108477978 -42305575 - THE1C LTR MaLR -116 259 2 1619 161 21 25 chr11 108477978 108478258 -42305295 - AluJo SINE Alu -33 279 1 525 269 81 0 chr11 108478486 108478635 -42304918 + MLT1E LTR MaLR 3 163 -430 658 275 22 6 chr11 108478637 108478815 -42304738 + MLT1E LTR MaLR 413 593 0 2008 134 3 0 chr11 108479327 108479634 -42303919 + AluY SINE Alu 1 308 -3 1252 109 17 0 chr11 108479658 108479833 -42303720 + AluSg/x SINE Alu 121 298 -14 196 311 27 14 chr11 108480317 108480391 -42303162 - MIR3 SINE MIR -11 197 123 2315 83 0 19 chr11 108480440 108480752 -42302801 - AluY SINE Alu -5 306 1 1413 281 84 35 chr11 108480800 108481605 -42301948 - L1M4 LINE L1 -2661 3485 2610 1177 244 33 19 chr11 108481605 108481965 -42301588 - MLT1A1 LTR MaLR 0 365 1 1413 281 84 35 chr11 108481965 108482267 -42301286 - L1M4 LINE L1 -3536 2610 2324 2585 295 46 18 chr11 108482339 108483054 -42300499 + L1MCb LINE L1 48 800 -5245 207 69 0 0 chr11 108483054 108483083 -42300470 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2585 295 46 18 chr11 108483083 108483341 -42300212 + L1MCb LINE L1 800 1049 -4996 1378 180 29 18 chr11 108483341 108483679 -42299874 - MER61C LTR ERV1 0 434 1 2354 267 51 26 chr11 108483679 108483922 -42299631 + L1MCb LINE L1 1047 1283 -5462 1958 134 0 0 chr11 108483922 108484213 -42299340 + AluY SINE Alu 21 311 0 2354 267 51 26 chr11 108484213 108485205 -42298348 + L1MCb LINE L1 1283 2515 -4230 2820 206 77 68 chr11 108485223 108486064 -42297489 + L1MC3 LINE L1 6505 7353 -432 948 229 30 122 chr11 108486083 108486447 -42297106 - MLT1A1 LTR MaLR 0 365 40 1712 48 3 130 chr11 108486447 108486740 -42296813 - L1PA8 LINE L1 -5 6167 5912 948 229 30 122 chr11 108486740 108486777 -42296776 - MLT1A1 LTR MaLR -325 40 1 7478 215 22 52 chr11 108486777 108486913 -42296640 - MLT1A1-int LTR MaLR 0 1735 1597 545 227 92 0 chr11 108486913 108487032 -42296521 + FLAM_A SINE Alu 1 130 -3 7478 215 22 52 chr11 108487032 108488683 -42294870 - MLT1A1-int LTR MaLR -138 1597 1 961 233 27 104 chr11 108488683 108489073 -42294480 - MLT1A1 LTR MaLR 0 365 11 945 166 5 57 chr11 108489074 108489267 -42294286 + L1MC3 LINE L1 7372 7554 -231 1035 84 0 0 chr11 108489267 108489398 -42294155 + AluSg/x SINE Alu 168 298 -14 357 221 36 64 chr11 108489401 108489541 -42294012 + L1MC3 LINE L1 7625 7760 -25 279 182 127 18 chr11 108489605 108489715 -42293838 - L1MEc LINE L1 -4006 2715 2594 436 205 16 63 chr11 108489722 108489849 -42293704 - MER3 DNA MER1_type -6 203 83 623 262 68 40 chr11 108489889 108490343 -42293210 - L1MEc LINE L1 -4390 2150 1684 336 349 41 55 chr11 108490788 108491080 -42292473 - MLT1J2 LTR MaLR -32 418 131 1687 148 159 29 chr11 108491080 108491113 -42292440 - MSTA LTR MaLR -1 427 400 2005 138 3 0 chr11 108491113 108491404 -42292149 + AluSq SINE Alu 3 294 -19 1687 148 159 29 chr11 108491404 108491748 -42291805 - MSTA LTR MaLR -28 400 1 892 333 52 39 chr11 108491842 108492569 -42290984 + L1MEc LINE L1 73 809 -5587 296 313 39 19 chr11 108492883 108493139 -42290414 + L1MEc LINE L1 2200 2460 -3755 3943 143 46 57 chr11 108493281 108494049 -42289504 + LTR1 LTR ERV1 24 782 -3 349 272 88 35 chr11 108494051 108494165 -42289388 + HUERS-P2 LTR ERV1 1 120 -2968 4975 176 41 26 chr11 108494170 108495139 -42288414 + HUERS-P2 LTR ERV1 243 1226 -1862 * 9217 136 41 11 chr11 108495137 108496567 -42286986 + HUERS-P2 LTR ERV1 1615 3088 0 2765 120 52 54 chr11 108496620 108497351 -42286202 + LTR1 LTR ERV1 20 785 0 447 261 58 84 chr11 108497425 108497889 -42285664 + L1MEc LINE L1 2592 3043 -3172 238 146 24 0 chr11 108497985 108498026 -42285527 + Alu SINE Alu 1 42 -260 491 114 0 25 chr11 108498026 108498105 -42285448 + AluSg/x SINE Alu 199 275 -34 183 80 0 0 chr11 108498144 108498169 -42285384 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 425 264 102 37 chr11 108498379 108498595 -42284958 + L1MDa LINE L1 2146 2375 -4165 2416 176 36 0 chr11 108498615 108499086 -42284467 + L1MC1 LINE L1 5458 5945 -388 248 409 29 7 chr11 108499100 108499237 -42284316 + L2 LINE L2 2920 3059 -254 1453 220 60 20 chr11 108499912 108500359 -42283194 + MLT2B1 LTR ERVL 5 515 0 212 325 0 12 chr11 108500360 108500443 -42283110 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 22 0 0 0 chr11 108501217 108501239 -42282314 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 108501775 108501797 -42281756 + AT_rich Low_complexity Low_complexity 1 22 0 349 275 209 16 chr11 108502052 108502173 -42281380 - L1M4b LINE L1 -6630 229 133 189 107 0 0 chr11 108502173 108502201 -42281352 + (TG)n Simple_repeat Simple_repeat 2 29 0 349 275 209 16 chr11 108502201 108502261 -42281292 - L1M4b LINE L1 -6726 133 13 322 135 0 0 chr11 108502899 108502951 -42280602 + L1M1 LINE L1 2646 2697 -4868 21 0 0 0 chr11 108503179 108503200 -42280353 + AT_rich Low_complexity Low_complexity 1 21 0 5722 31 4 0 chr11 108503200 108503879 -42279674 - L1PA4 LINE L1 0 6155 5474 609 337 95 52 chr11 108504180 108504327 -42279226 - L2 LINE L2 -218 3095 2956 1077 265 108 54 chr11 108504327 108504848 -42278705 - MLT1H LTR MaLR 0 549 1 609 337 95 52 chr11 108504848 108505312 -42278241 - L2 LINE L2 -357 2956 2456 265 347 73 76 chr11 108505336 108506008 -42277545 + L2 LINE L2 1981 2650 -664 6794 184 39 16 chr11 108506472 108508631 -42274922 + L1M1 LINE L1 3076 5284 -2281 32353 33 1 0 chr11 108508732 108513457 -42270096 + L1PA3 LINE L1 1444 6171 0 2216 117 0 0 chr11 108514227 108514534 -42269019 - AluSx SINE Alu -5 307 1 335 333 105 21 chr11 108514932 108515282 -42268271 - L2 LINE L2 -225 3047 2668 28 29 0 0 chr11 108516249 108516284 -42267269 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr11 108516419 108516443 -42267110 + AT_rich Low_complexity Low_complexity 1 24 0 265 339 39 8 chr11 108517112 108517242 -42266311 + MIR SINE MIR 14 147 -115 995 282 79 37 chr11 108517243 108518030 -42265523 + L1M1 LINE L1 5547 6392 -1173 1560 270 62 48 chr11 108518317 108519149 -42264404 - L1ME1 LINE L1 -5 6161 5318 24 0 0 0 chr11 108519171 108519195 -42264358 + AT_rich Low_complexity Low_complexity 1 24 0 29 60 0 0 chr11 108519235 108519285 -42264268 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr11 108519396 108519424 -42264129 + AT_rich Low_complexity Low_complexity 1 28 0 218 286 91 0 chr11 108519473 108519550 -42264003 + MIR SINE MIR 68 151 -111 189 279 38 51 chr11 108521080 108521159 -42262394 - MIR SINE MIR -93 115 38 216 97 0 0 chr11 108521977 108522008 -42261545 + (CATATA)n Simple_repeat Simple_repeat 3 33 0 5831 176 36 15 chr11 108522111 108523331 -42260222 + L1MA3 LINE L1 4074 5367 -938 2123 119 3 7 chr11 108523331 108523634 -42259919 + AluSc SINE Alu 1 302 -7 5831 176 36 15 chr11 108523634 108524587 -42258966 + L1MA3 LINE L1 5367 6298 -7 25 51 0 0 chr11 108524798 108524837 -42258716 + AT_rich Low_complexity Low_complexity 1 39 0 2338 93 7 0 chr11 108525266 108525576 -42257977 + AluSp SINE Alu 1 312 -1 387 0 0 0 chr11 108525587 108525630 -42257923 + (CA)n Simple_repeat Simple_repeat 2 44 0 23 54 0 0 chr11 108525704 108525741 -42257812 + AT_rich Low_complexity Low_complexity 1 37 0 245 255 145 14 chr11 108525742 108525887 -42257666 + L1MDa LINE L1 1847 2010 -4530 * 6961 18 0 0 chr11 108525886 108526684 -42256869 - L1PA2 LINE L1 -2 6153 5356 10192 33 0 0 chr11 108526684 108528673 -42254880 - L1PA2 LINE L1 -2 6153 4165 657 31 21 21 chr11 108528673 108528754 -42254799 - L1PA2 LINE L1 -1637 4509 4426 378 73 0 0 chr11 108528749 108528804 -42254749 + L1P LINE L1 3033 3087 -3059 * 1793 206 8 35 chr11 108529415 108529809 -42253744 + MLT1B LTR MaLR 8 390 0 225 218 129 30 chr11 108530163 108530264 -42253289 + L1M4b LINE L1 1261 1371 -5488 1514 277 22 42 chr11 108530276 108530777 -42252776 + L1M4b LINE L1 757 1247 -5641 2415 261 103 18 chr11 108530871 108531831 -42251722 + L1M4b LINE L1 1448 2325 -4633 2190 85 13 50 chr11 108531831 108532149 -42251404 + AluSg SINE Alu 2 307 -3 2415 261 103 18 chr11 108532149 108532421 -42251132 + L1M4b LINE L1 2325 2749 -4209 2372 115 0 0 chr11 108532421 108532734 -42250819 + AluSq SINE Alu 1 313 0 2415 261 103 18 chr11 108532734 108532812 -42250741 + L1M4b LINE L1 2749 2819 -4139 7580 229 67 70 chr11 108532896 108533372 -42250181 + L1M4b LINE L1 3386 3861 -3096 790 131 123 0 chr11 108533372 108533502 -42250051 - MER1B DNA MER1_type 0 339 194 7580 229 67 70 chr11 108533502 108534214 -42249339 + L1M4b LINE L1 3861 4573 -2384 505 191 130 0 chr11 108534214 108534329 -42249224 + FLAM_A SINE Alu 2 131 -2 7580 229 67 70 chr11 108534329 108535472 -42248081 + L1M4b LINE L1 4573 5842 -1115 2897 194 47 79 chr11 108535476 108536856 -42246697 - L1MA6 LINE L1 -19 6281 4959 3913 198 25 22 chr11 108536857 108537974 -42245579 + L1MA9 LINE L1 5827 6948 -175 2168 120 3 0 chr11 108537974 108538265 -42245288 - AluSp SINE Alu -19 294 3 14818 117 55 17 chr11 108538496 108542036 -42241517 + HERV17 LTR ERV1 1 2972 0 1068 126 0 0 chr11 108542036 108542186 -42241367 + HERV17 LTR ERV1 4757 4906 -3493 1953 127 41 12 chr11 108542171 108543012 -42240541 + HERV17 LTR ERV1 703 3446 -3203 * 4533 103 11 0 chr11 108543007 108543639 -42239914 + HERV17 LTR ERV1 7757 8395 -4 4405 81 181 51 chr11 108543644 108544375 -42239178 + LTR12 LTR ERV1 1 826 0 2034 190 49 7 chr11 108544876 108545302 -42238251 - MER65A LTR ERV1 0 445 2 23 78 0 0 chr11 108546477 108546528 -42237025 + AT_rich Low_complexity Low_complexity 1 51 0 2037 118 0 0 chr11 108546730 108547002 -42236551 + AluSx SINE Alu 21 292 -20 1869 68 34 34 chr11 108547136 108547401 -42236152 - AluY SINE Alu -11 300 36 2392 80 0 3 chr11 108547804 108548104 -42235449 - AluY SINE Alu -12 299 1 21 57 0 0 chr11 108548176 108548211 -42235342 + AT_rich Low_complexity Low_complexity 1 35 0 271 342 40 0 chr11 108548537 108548613 -42234940 + MIR SINE MIR 65 143 -65 733 250 52 10 chr11 108548688 108548880 -42234673 + MIR SINE MIR 13 212 -50 253 67 22 22 chr11 108549205 108549250 -42234303 + (GAA)n Simple_repeat Simple_repeat 1 45 0 2076 97 0 64 chr11 108549396 108549725 -42233828 + AluY SINE Alu 1 308 -3 365 330 44 34 chr11 108550329 108550535 -42233018 + L1MC4a LINE L1 5670 5877 -1931 2095 118 3 0 chr11 108550581 108550870 -42232683 + AluSx SINE Alu 5 294 -18 189 0 0 0 chr11 108551177 108551198 -42232355 + (CA)n Simple_repeat Simple_repeat 2 22 0 26 30 0 0 chr11 108551394 108551427 -42232126 + AT_rich Low_complexity Low_complexity 1 33 0 1420 230 114 55 chr11 108551507 108552015 -42231538 - MLT1F1 LTR MaLR -23 570 1 941 301 124 14 chr11 108552455 108552897 -42230656 - L2 LINE L2 -1589 1725 1235 514 253 0 79 chr11 108552970 108553148 -42230405 + LTR33 LTR ERVL 3 166 -355 543 303 75 5 chr11 108553205 108553393 -42230160 + LTR33 LTR ERVL 321 521 0 254 95 24 0 chr11 108554704 108554746 -42228807 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 494 214 0 163 chr11 108555127 108555323 -42228230 + MER3 DNA MER1_type 28 191 -18 2070 117 10 0 chr11 108555381 108555679 -42227874 - AluY SINE Alu -10 301 1 324 351 84 10 chr11 108555903 108556105 -42227448 - L2 LINE L2 -499 2815 2599 2110 128 0 3 chr11 108556133 108556446 -42227107 + AluSx SINE Alu 1 312 0 244 271 38 45 chr11 108556784 108556917 -42226636 - MLT1K LTR MaLR -27 561 430 216 0 0 0 chr11 108556959 108556983 -42226570 + (A)n Simple_repeat Simple_repeat 1 24 0 2083 140 0 7 chr11 108557556 108557863 -42225690 + AluSx SINE Alu 8 312 0 438 264 13 6 chr11 108558349 108558508 -42225045 + (TA)n Simple_repeat Simple_repeat 2 161 0 2354 97 0 0 chr11 108558950 108559250 -42224303 - AluSg SINE Alu -10 300 1 452 170 54 18 chr11 108559659 108559771 -42223782 + MER4C LTR ERV1 1 116 -349 1262 220 65 95 chr11 108559853 108560348 -42223205 + LTR34 LTR ERV1 136 695 -4 1584 149 142 0 chr11 108560372 108560667 -42222886 + MER1B DNA MER1_type 1 337 0 529 70 14 0 chr11 108560839 108560910 -42222643 + MADE1 DNA Mariner 1 72 -8 1786 209 5 30 chr11 108560957 108561330 -42222223 - MER93b LTR ERV1 0 373 10 2370 110 0 0 chr11 108561741 108562051 -42221502 + AluSg SINE Alu 1 310 0 24 32 0 0 chr11 108562574 108562605 -42220948 + AT_rich Low_complexity Low_complexity 1 31 0 280 248 38 57 chr11 108562778 108562883 -42220670 - MIR SINE MIR -68 140 38 2151 114 0 3 chr11 108563039 108563337 -42220216 - AluSx SINE Alu -10 302 6 296 47 0 23 chr11 108564671 108564714 -42218839 + (CA)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr11 108564917 108564938 -42218615 + AT_rich Low_complexity Low_complexity 1 21 0 198 71 0 0 chr11 108565340 108565368 -42218185 + (TTG)n Simple_repeat Simple_repeat 1 28 0 1154 61 27 20 chr11 108566069 108566217 -42217336 + AluY SINE Alu 2 150 -161 10048 63 4 3 chr11 108566217 108567481 -42216072 + LTR10A-int LTR ERV1 2532 3796 -3100 3550 236 28 25 chr11 108567954 108568857 -42214696 + LTR10A-int LTR ERV1 5741 6645 -4 1855 191 113 47 chr11 108568860 108569374 -42214179 + LTR10A LTR ERV1 1 548 -61 1426 312 61 12 chr11 108569397 108570037 -42213516 + HERV16 LTR ERVL 1669 2378 -2765 7116 61 9 3 chr11 108570041 108571135 -42212418 - L1PA8 LINE L1 -5 6167 5076 300 53 0 0 chr11 108571273 108571311 -42212242 + (A)n Simple_repeat Simple_repeat 1 38 0 556 367 73 31 chr11 108571319 108571796 -42211757 + HERV16 LTR ERVL 2587 3083 -1913 950 306 106 13 chr11 108571839 108572218 -42211335 - MER69 DNA AcHobo -2112 414 1 607 362 58 13 chr11 108573682 108574063 -42209490 + LTR16A LTR ERVL 19 416 -34 1679 95 0 41 chr11 108574239 108574481 -42209072 + AluSx SINE Alu 1 232 -80 234 229 0 105 chr11 108575639 108575744 -42207809 + MIR SINE MIR 113 206 -56 2141 115 3 3 chr11 108576547 108576842 -42206711 + AluSg SINE Alu 1 295 -15 21 0 0 0 chr11 108576909 108576930 -42206623 + AT_rich Low_complexity Low_complexity 1 21 0 1239 113 92 0 chr11 108576953 108577148 -42206405 - L1PA10 LINE L1 -4 6164 5952 25 31 0 0 chr11 108577815 108577847 -42205706 + AT_rich Low_complexity Low_complexity 1 32 0 307 259 89 36 chr11 108577913 108578025 -42205528 - L1M4 LINE L1 -1998 4646 4529 418 136 0 23 chr11 108578042 108578130 -42205423 + (TA)n Simple_repeat Simple_repeat 1 86 0 701 312 28 8 chr11 108578433 108578683 -42204870 + MIR SINE MIR 2 256 -6 339 254 76 25 chr11 108579229 108579347 -42204206 + MIR SINE MIR 114 237 -25 235 292 14 14 chr11 108579829 108579840 -42203713 - L1MA10 LINE L1 -68 6266 6256 1080 247 20 52 chr11 108579840 108580241 -42203312 - L1ME2 LINE L1 -71 6093 5706 619 138 0 9 chr11 108580256 108580365 -42203188 + L1P LINE L1 2419 2526 -3620 * 2080 222 99 18 chr11 108580364 108581162 -42202391 - L1M4 LINE L1 -4855 1791 922 1134 121 75 147 chr11 108581163 108581470 -42202083 + LTR12 LTR ERV1 1 285 -429 267 214 45 22 chr11 108581471 108581560 -42201993 + LTR30 LTR ERV1 553 643 -79 729 120 0 0 chr11 108581562 108581662 -42201891 + LTR12 LTR ERV1 615 714 0 1040 281 41 25 chr11 108581662 108582219 -42201334 - L1M4 LINE L1 -5618 924 274 998 106 0 0 chr11 108582242 108582374 -42201179 - AluSq/x SINE Alu -180 132 1 22 80 0 0 chr11 108582660 108582710 -42200843 + AT_rich Low_complexity Low_complexity 1 50 0 360 393 32 14 chr11 108583520 108583739 -42199814 + MER115 DNA AcHobo 126 348 -345 554 289 6 6 chr11 108583785 108583958 -42199595 + MER115 DNA AcHobo 521 693 0 382 285 62 8 chr11 108583991 108584121 -42199432 - L2 LINE L2 0 3313 3177 243 289 133 19 chr11 108584122 108584333 -42199220 + L1MC/D LINE L1 5580 5814 -1994 216 184 0 0 chr11 108585014 108585063 -42198490 + CT-rich Low_complexity Low_complexity 2 50 0 3171 158 32 2 chr11 108585674 108586237 -42197316 + L1PA16 LINE L1 5580 6159 -7 213 39 0 0 chr11 108586305 108586331 -42197222 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 295 344 19 44 chr11 108587526 108587686 -42195867 - L3 LINE CR1 -31 1546 1391 31 88 0 0 chr11 108588759 108588839 -42194714 + AT_rich Low_complexity Low_complexity 1 80 0 1629 163 45 45 chr11 108589743 108590118 -42193435 - THE1C LTR MaLR 0 375 1 6423 152 78 14 chr11 108590118 108591332 -42192221 - THE1C-int LTR MaLR 0 1580 363 644 184 0 26 chr11 108591333 108591447 -42192106 - THE1C LTR MaLR -264 111 1 4447 172 59 0 chr11 108593434 108594278 -42189275 - Tigger3b DNA MER2_type -1 1230 337 229 257 27 0 chr11 108594279 108594353 -42189200 + (TA)n Simple_repeat Simple_repeat 2 77 0 453 169 39 0 chr11 108594354 108594431 -42189122 - Tigger3b DNA MER2_type -1142 89 10 183 114 0 0 chr11 108594444 108594479 -42189074 + (TA)n Simple_repeat Simple_repeat 2 36 0 1377 170 111 42 chr11 108594488 108594794 -42188759 - Tigger3b DNA MER2_type -903 328 2 252 247 14 27 chr11 108594795 108594868 -42188685 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 1903 213 12 27 chr11 108595170 108595230 -42188323 - MER57A LTR ERV1 0 403 344 2186 137 28 17 chr11 108595230 108595588 -42187965 + THE1B LTR MaLR 3 364 0 11535 95 2 4 chr11 108595588 108597172 -42186381 + THE1B-int LTR MaLR 1 1580 0 2175 140 36 17 chr11 108597172 108597529 -42186024 + THE1B LTR MaLR 1 364 0 1903 213 12 27 chr11 108597529 108597875 -42185678 - MER57A LTR ERV1 -56 347 1 707 197 7 14 chr11 108597875 108598017 -42185536 - MER57A-int LTR ERV1 0 7537 7397 380 137 211 21 chr11 108598017 108598112 -42185441 - LTR54B LTR ERV1 -160 338 226 605 193 34 0 chr11 108598171 108598290 -42185263 - LTR54 LTR ERV1 -387 123 1 3760 125 22 7 chr11 108598693 108599278 -42184275 - MER41B LTR ERV1 -41 594 1 706 134 34 0 chr11 108599525 108599644 -42183909 - FLAM_A SINE Alu 0 142 20 3788 211 49 18 chr11 108599658 108601156 -42182397 - L1MB8 LINE L1 -5 6173 4633 1092 253 37 69 chr11 108601156 108601842 -42181711 - LTR9 LTR ERV1 0 779 1 1838 250 32 27 chr11 108601875 108602615 -42180938 - L1MB8 LINE L1 -1538 4608 3865 1679 242 70 33 chr11 108602618 108603044 -42180509 - MLT2B1 LTR ERVL 0 520 79 1322 244 136 19 chr11 108603073 108603500 -42180053 - MER50 LTR ERV1 -19 715 239 363 215 25 0 chr11 108603693 108603772 -42179781 - MLT2B1 LTR ERVL -432 83 3 210 186 34 51 chr11 108603811 108603870 -42179683 + L2 LINE L2 2437 2494 -820 3545 121 32 14 chr11 108603973 108604562 -42178991 - MER11A LTR ERVK 0 1266 667 265 56 0 0 chr11 108604561 108604597 -42178956 - MER11A LTR ERVK -905 361 326 * 1413 88 40 4 chr11 108604595 108604854 -42178699 - MER11B LTR ERVK -877 359 1 430 357 45 6 chr11 108604854 108605011 -42178542 + L2 LINE L2 2598 2760 -554 1872 184 148 122 chr11 108606603 108607406 -42176147 + LTR1B LTR ERV1 3 826 0 485 270 51 7 chr11 108607406 108607538 -42176015 + MER45A DNA AcHobo 40 177 -1 441 365 26 17 chr11 108608641 108608874 -42174679 - MIR SINE MIR -16 246 12 2081 117 0 0 chr11 108609131 108609414 -42174139 - AluSc SINE Alu -26 283 1 314 196 82 31 chr11 108609567 108609664 -42173889 - MIR SINE MIR -56 206 105 1461 147 0 4 chr11 108609666 108609898 -42173655 + AluSg/x SINE Alu 73 303 -7 1715 124 10 16 chr11 108610032 108610338 -42173215 - AluY SINE Alu -7 304 1 212 222 37 0 chr11 108611792 108611846 -42171707 - MIR SINE MIR -32 230 175 278 277 196 7 chr11 108611882 108612030 -42171523 + MLT1I LTR MaLR 19 194 -215 243 289 21 41 chr11 108612108 108612205 -42171348 + MLT1J2 LTR MaLR 313 407 -43 182 313 353 4 chr11 108612281 108612556 -42170997 - L2 LINE L2 -1081 2233 1863 22 0 0 0 chr11 108612560 108612582 -42170971 + AT_rich Low_complexity Low_complexity 1 22 0 1653 83 25 21 chr11 108612679 108612920 -42170633 - THE1A LTR MaLR 0 355 114 11691 33 0 0 chr11 108612920 108614330 -42169223 - L1PA2 LINE L1 -1507 4639 3230 7592 21 6 0 chr11 108614330 108615843 -42167710 + L1PA2 LINE L1 4637 6155 0 945 69 8 8 chr11 108615846 108615976 -42167577 - THE1A LTR MaLR -225 130 1 23 0 0 0 chr11 108616896 108616919 -42166634 + AT_rich Low_complexity Low_complexity 1 23 0 183 42 0 0 chr11 108617692 108617716 -42165837 + (TA)n Simple_repeat Simple_repeat 1 24 0 2757 249 55 0 chr11 108617909 108618532 -42165021 + L1MB8 LINE L1 384 1040 -5819 877 185 75 6 chr11 108618555 108618728 -42164825 - LTR51 LTR ERV1 0 671 487 * 1071 218 181 3 chr11 108618726 108618800 -42164753 - LTR51 LTR ERV1 -326 345 285 183 42 0 0 chr11 108618800 108618824 -42164729 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1071 218 181 3 chr11 108618824 108619042 -42164511 - LTR51 LTR ERV1 -386 285 1 559 252 35 0 chr11 108619045 108619188 -42164365 + L1MB8 LINE L1 1040 1187 -5672 1158 257 161 19 chr11 108619234 108619742 -42163811 + L1MB8 LINE L1 3112 3546 -3411 2241 144 11 11 chr11 108619742 108620117 -42163436 + THE1C LTR MaLR 1 375 0 9839 115 50 4 chr11 108620117 108621628 -42161925 + THE1C-int LTR MaLR 1 1580 0 2381 130 8 13 chr11 108621628 108622005 -42161548 + THE1C LTR MaLR 1 375 0 1158 257 161 19 chr11 108622005 108622306 -42161247 + L1MB8 LINE L1 3545 4039 -2918 2745 161 22 18 chr11 108622379 108622875 -42160678 - MER41E LTR ERV1 0 512 15 602 259 45 34 chr11 108622999 108623377 -42160176 + L1MB8 LINE L1 4151 4501 -2456 1323 226 38 62 chr11 108623404 108623904 -42159649 + L1MB8 LINE L1 6263 6750 -239 * 4730 263 57 34 chr11 108623901 108626363 -42157190 - L1 LINE L1 -2442 3592 1187 207 0 0 0 chr11 108626363 108626386 -42157167 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1816 118 30 19 chr11 108626394 108626665 -42156888 - AluSg SINE Alu -36 274 1 4730 263 57 34 chr11 108626665 108627526 -42156027 - L1 LINE L1 -4853 1181 480 1278 220 33 9 chr11 108627549 108627886 -42155667 - L1MB1 LINE L1 -1314 4832 4488 3498 205 41 44 chr11 108627893 108629170 -42154383 + L1MB1 LINE L1 4865 6138 -30 2390 47 3 13 chr11 108629170 108629468 -42154085 - AluY SINE Alu -16 295 1 3498 205 41 44 chr11 108629468 108629499 -42154054 + L1MB1 LINE L1 6138 6168 0 715 268 80 4 chr11 108629501 108629777 -42153776 + L1M4 LINE L1 2478 2774 -3372 2074 119 0 3 chr11 108630091 108630385 -42153168 + AluSx SINE Alu 4 296 -16 3195 156 95 44 chr11 108631030 108631663 -42151890 + L1PA7 LINE L1 5480 6144 -10 206 216 0 0 chr11 108632549 108632600 -42150953 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1135 258 48 40 chr11 108632602 108633082 -42150471 + L1MC4 LINE L1 6820 7303 -739 180 77 0 0 chr11 108633087 108633113 -42150440 + (TAA)n Simple_repeat Simple_repeat 1 26 0 236 375 11 11 chr11 108633291 108633379 -42150174 - MIR SINE MIR -166 96 9 238 195 103 46 chr11 108633907 108633994 -42149559 - L2 LINE L2 -7 3306 3215 5218 111 61 18 chr11 108634909 108635311 -42148242 + L1PA11 LINE L1 5061 5444 -730 2143 117 3 0 chr11 108635311 108635619 -42147934 + AluY SINE Alu 1 309 -2 5218 111 61 18 chr11 108635619 108635763 -42147790 + L1PA11 LINE L1 5444 5580 -594 2348 138 19 8 chr11 108635763 108636134 -42147419 + THE1C LTR MaLR 1 375 0 5218 111 61 18 chr11 108636134 108636659 -42146894 + L1PA11 LINE L1 5580 6172 -2 38 0 0 0 chr11 108637917 108637955 -42145598 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr11 108638156 108638196 -42145357 + AT_rich Low_complexity Low_complexity 1 40 0 553 386 50 18 chr11 108638991 108639431 -42144122 + L1MA4 LINE L1 1 454 -5827 892 261 56 29 chr11 108639943 108640357 -42143196 + L1MA4 LINE L1 1120 1544 -4737 * 7509 203 46 34 chr11 108640347 108644541 -42139012 + L1MA4 LINE L1 2306 6504 0 201 298 18 0 chr11 108644935 108644992 -42138561 + CT-rich Low_complexity Low_complexity 3 60 0 398 328 98 16 chr11 108644995 108645251 -42138302 - L2 LINE L2 -1 3312 3036 4223 143 132 0 chr11 108645412 108646142 -42137411 + LTR12 LTR ERV1 1 826 0 200 341 127 8 chr11 108646142 108646268 -42137285 - L2 LINE L2 -457 2857 2717 31 44 0 0 chr11 108646317 108646362 -42137191 + AT_rich Low_complexity Low_complexity 1 45 0 210 71 0 0 chr11 108646545 108646573 -42136980 + (T)n Simple_repeat Simple_repeat 1 28 0 201 229 0 0 chr11 108646573 108646621 -42136932 + G-rich Low_complexity Low_complexity 1 48 0 1387 83 0 0 chr11 108646793 108646974 -42136579 - AluY SINE Alu 0 311 131 2158 72 3 10 chr11 108647677 108647967 -42135586 + AluY SINE Alu 1 288 -23 180 0 0 0 chr11 108648252 108648272 -42135281 + (TG)n Simple_repeat Simple_repeat 2 21 0 5248 88 101 0 chr11 108648843 108649593 -42133960 - LTR12 LTR ERV1 0 826 1 4255 161 17 43 chr11 108650587 108650948 -42132605 - L1PA16 LINE L1 -1 6165 5796 2405 80 3 3 chr11 108650948 108651261 -42132292 - AluSp SINE Alu 0 313 1 4255 161 17 43 chr11 108651261 108651723 -42131830 - L1PA16 LINE L1 -370 5796 5333 2097 122 0 13 chr11 108651723 108652027 -42131526 - AluSx SINE Alu -12 300 1 4255 161 17 43 chr11 108652027 108652246 -42131307 - L1PA16 LINE L1 -833 5333 5110 698 317 136 28 chr11 108652393 108653072 -42130481 - HAL1 LINE L1 -258 2249 1498 27 0 0 0 chr11 108653377 108653404 -42130149 + AT_rich Low_complexity Low_complexity 1 27 0 460 115 13 0 chr11 108653463 108653541 -42130012 + FLAM_C SINE Alu 64 142 -1 180 0 0 0 chr11 108653752 108653772 -42129781 + (A)n Simple_repeat Simple_repeat 1 20 0 531 234 18 0 chr11 108653783 108653894 -42129659 - FLAM_A SINE Alu -26 116 4 397 341 14 54 chr11 108654452 108654675 -42128878 - HAL1 LINE L1 -2171 336 123 1935 198 51 32 chr11 108655231 108655705 -42127848 + MER66B LTR ERV1 4 486 0 652 226 7 0 chr11 108655713 108655850 -42127703 - MER3 DNA MER1_type -61 148 11 236 155 0 35 chr11 108656054 108656112 -42127441 + (CATA)n Simple_repeat Simple_repeat 3 58 0 204 205 0 0 chr11 108656155 108656194 -42127359 + GA-rich Low_complexity Low_complexity 1 39 0 309 271 193 18 chr11 108657133 108657413 -42126140 + HAL1b LINE L1 435 763 -585 516 310 32 0 chr11 108657455 108657610 -42125943 - MIR SINE MIR -96 166 7 326 243 149 50 chr11 108657610 108657832 -42125721 + HAL1b LINE L1 755 998 -350 29 78 0 0 chr11 108657881 108657945 -42125608 + AT_rich Low_complexity Low_complexity 1 64 0 34 24 0 0 chr11 108658092 108658133 -42125420 + AT_rich Low_complexity Low_complexity 1 41 0 577 325 60 32 chr11 108658680 108658929 -42124624 - MIR SINE MIR -5 257 2 183 315 98 33 chr11 108660888 108660980 -42122573 + MIR SINE MIR 31 128 -134 628 219 152 68 chr11 108660983 108661280 -42122273 + MSTD LTR MaLR 1 396 0 376 307 24 8 chr11 108661283 108661410 -42122143 + MIR SINE MIR 134 262 0 21 0 0 0 chr11 108662935 108662956 -42120597 + AT_rich Low_complexity Low_complexity 1 21 0 251 291 215 17 chr11 108663236 108663289 -42120264 + MIR SINE MIR 53 94 -168 2524 42 0 10 chr11 108663289 108663596 -42119957 - AluY SINE Alu -7 304 1 251 291 215 17 chr11 108663596 108663714 -42119839 + MIR SINE MIR 94 258 -4 1713 112 8 0 chr11 108666795 108667046 -42116507 + AluSx SINE Alu 45 297 -15 23 0 0 0 chr11 108667542 108667565 -42115988 + AT_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr11 108667679 108667724 -42115829 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr11 108667805 108667836 -42115717 + AT_rich Low_complexity Low_complexity 1 31 0 805 58 10 0 chr11 108668388 108668492 -42115061 + AluSg SINE Alu 5 109 -201 326 78 0 20 chr11 108668524 108668575 -42114978 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 257 245 82 17 chr11 108669132 108669316 -42114237 + L1MEd LINE L1 954 1145 -4974 324 250 45 36 chr11 108669398 108669510 -42114043 + L1MCc LINE L1 282 394 -6029 1197 280 15 9 chr11 108669539 108669868 -42113685 + L1MD3 LINE L1 7331 7661 -334 213 159 0 23 chr11 108670022 108670066 -42113487 + (TA)n Simple_repeat Simple_repeat 2 44 0 231 203 188 0 chr11 108670248 108670312 -42113241 + L1ME3 LINE L1 6082 6157 -5 24 32 0 0 chr11 108670868 108670899 -42112654 + AT_rich Low_complexity Low_complexity 1 31 0 627 225 21 129 chr11 108671093 108671237 -42112316 + L1MC/D LINE L1 5337 5495 -2313 1899 116 7 10 chr11 108671237 108671538 -42112015 + AluSg SINE Alu 1 300 -10 627 225 21 129 chr11 108671538 108671551 -42112002 + L1MC/D LINE L1 5495 5508 -2300 2408 77 0 0 chr11 108671551 108671861 -42111692 + AluY SINE Alu 1 310 -1 627 225 21 129 chr11 108671861 108671989 -42111564 + L1MC/D LINE L1 5508 5587 -2221 2000 121 7 3 chr11 108671989 108672287 -42111266 - AluSq SINE Alu -10 303 5 627 225 21 129 chr11 108672287 108672324 -42111229 + L1MC/D LINE L1 5587 5626 -2182 2050 119 23 3 chr11 108672495 108672797 -42110756 - AluSx SINE Alu -2 310 3 250 235 29 0 chr11 108673069 108673137 -42110416 + MLT1J1 LTR MaLR 358 427 -19 33 0 0 0 chr11 108673230 108673263 -42110290 + AT_rich Low_complexity Low_complexity 1 33 0 232 385 29 0 chr11 108673446 108673550 -42110003 + L2 LINE L2 2927 3033 -239 25 31 0 0 chr11 108675114 108675146 -42108407 + AT_rich Low_complexity Low_complexity 1 32 0 195 242 0 0 chr11 108675868 108675930 -42107623 + (TA)n Simple_repeat Simple_repeat 1 62 0 228 216 0 0 chr11 108676801 108676852 -42106701 + (TA)n Simple_repeat Simple_repeat 2 52 0 653 274 16 16 chr11 108677287 108677473 -42106080 + MER5A DNA MER1_type 1 186 -3 2159 88 3 14 chr11 108677707 108678004 -42105549 + AluSc SINE Alu 1 294 -15 621 184 7 7 chr11 108678344 108678480 -42105073 - L1MB8 LINE L1 0 6989 6854 690 101 37 0 chr11 108678540 108678649 -42104904 + MLT2A2 LTR ERVL 1 113 -340 656 137 51 0 chr11 108678643 108678760 -42104793 + MLT2A2 LTR ERVL 331 453 0 * 1192 215 121 1 chr11 108678761 108679084 -42104469 - L1MB8 LINE L1 -179 6810 6454 776 263 190 0 chr11 108679136 108679589 -42103964 - L1MB8 LINE L1 -2889 4068 3530 572 238 8 0 chr11 108679606 108679732 -42103821 - Alu SINE Alu -9 301 175 410 71 71 0 chr11 108679814 108679884 -42103669 + MLT2A2 LTR ERVL 1 75 -378 782 209 6 6 chr11 108679884 108680042 -42103511 - AluJo SINE Alu -154 158 1 1022 273 51 38 chr11 108680056 108680848 -42102705 - L1MB8 LINE L1 -3460 3497 2732 1940 97 3 88 chr11 108680960 108681289 -42102264 - AluSx SINE Alu -11 301 1 2272 148 14 54 chr11 108681680 108682126 -42101427 + MSTA LTR MaLR 1 428 0 3093 234 83 31 chr11 108682164 108683676 -42099877 - L1MB8 LINE L1 -4639 2320 726 308 387 43 21 chr11 108683817 108684096 -42099457 - L1ME LINE L1 -542 5579 5295 402 288 34 23 chr11 108684331 108684508 -42099045 - L1P LINE L1 -1092 5054 4876 1738 217 6 0 chr11 108684975 108685335 -42098218 - L1PB4 LINE L1 -6 6150 5789 253 100 25 38 chr11 108685344 108685424 -42098129 + (TA)n Simple_repeat Simple_repeat 1 79 0 1026 156 0 6 chr11 108685426 108685599 -42097954 - L1PB4 LINE L1 -365 5791 5620 * 1211 100 13 78 chr11 108685597 108685827 -42097726 + L1PB4 LINE L1 5411 5625 -531 2260 104 0 0 chr11 108685838 108686135 -42097418 - AluSc SINE Alu -12 297 1 496 252 83 64 chr11 108686371 108686637 -42096916 - L2 LINE L2 -49 3264 2994 285 246 0 0 chr11 108686667 108686732 -42096821 - L1ME LINE L1 -413 5749 5685 889 202 43 45 chr11 108686753 108687038 -42096515 - L1M3 LINE L1 -608 5575 5296 294 219 156 25 chr11 108687631 108687862 -42095691 - L1MB8 LINE L1 -230 5948 5691 275 200 0 14 chr11 108688425 108688495 -42095058 + (TA)n Simple_repeat Simple_repeat 1 69 0 251 222 0 14 chr11 108688641 108688713 -42094840 + (TA)n Simple_repeat Simple_repeat 2 72 0 547 340 18 4 chr11 108688730 108689009 -42094544 - L1MB8 LINE L1 -513 5649 5367 241 269 0 51 chr11 108689232 108689310 -42094243 + T-rich Low_complexity Low_complexity 2 75 0 757 229 55 96 chr11 108689382 108689780 -42093773 - L1MB8 LINE L1 -1303 4843 4462 350 309 51 34 chr11 108689935 108690110 -42093443 - L1MB8 LINE L1 -1711 4435 4258 234 191 0 0 chr11 108690465 108690512 -42093041 + (TA)n Simple_repeat Simple_repeat 1 47 0 682 201 21 0 chr11 108690516 108690660 -42092893 - L1PA15 LINE L1 -2 6163 6017 274 128 4 6 chr11 108693003 108693254 -42090299 + AluSx SINE Alu 1 297 -3 211 137 20 20 chr11 108693258 108693309 -42090244 + GA-rich Low_complexity Low_complexity 2 52 0 554 269 27 119 chr11 108693610 108693988 -42089565 + MLT1G1 LTR MaLR 13 399 -196 228 111 0 0 chr11 108694196 108694232 -42089321 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 426 273 101 112 chr11 108694790 108694901 -42088652 + MLT1F LTR MaLR 73 184 -358 2189 111 0 3 chr11 108694901 108695198 -42088355 - AluSq SINE Alu -17 296 1 426 273 101 112 chr11 108695198 108695438 -42088115 + MLT1F LTR MaLR 184 351 -191 399 283 8 17 chr11 108695456 108695576 -42087977 + MLT1F LTR MaLR 477 595 0 249 222 0 0 chr11 108696145 108696208 -42087345 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 563 222 146 22 chr11 108696240 108696425 -42087128 + MIR SINE MIR 5 212 -50 201 213 0 53 chr11 108696438 108696513 -42087040 + A-rich Low_complexity Low_complexity 2 72 0 250 211 18 0 chr11 108696739 108696796 -42086757 - MLT1H1 LTR MaLR 0 555 498 2075 130 7 0 chr11 108696801 108697101 -42086452 + AluSx SINE Alu 1 302 -10 402 21 0 0 chr11 108698429 108698476 -42085077 + (TG)n Simple_repeat Simple_repeat 2 48 0 272 245 86 53 chr11 108698659 108698810 -42084743 + L2 LINE L2 3158 3313 0 180 0 0 0 chr11 108699545 108699565 -42083988 + (TA)n Simple_repeat Simple_repeat 2 21 0 998 209 7 46 chr11 108699565 108699872 -42083681 - AluSx SINE Alu -7 295 1 21 0 0 0 chr11 108700779 108700800 -42082753 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr11 108701095 108701120 -42082433 + AT_rich Low_complexity Low_complexity 1 25 0 767 120 60 54 chr11 108802866 108803033 -41980520 - L1MA2 LINE L1 0 6304 6137 2276 101 3 0 chr11 108803038 108803326 -41980227 - AluSp SINE Alu -24 289 1 1348 75 32 0 chr11 108803326 108803512 -41980041 + MER61A-int LTR ERV1 3668 3859 -1358 5210 99 91 124 chr11 108803515 108805107 -41978446 - pTR5 LTR ERV1 0 2438 741 * 7795 119 54 16 chr11 108805105 108806414 -41977139 + MER61A-int LTR ERV1 3856 5214 -3 1809 151 54 21 chr11 108806417 108806749 -41976804 + MER61A LTR ERV1 1 343 0 2954 188 97 17 chr11 108806749 108807468 -41976085 + MER61A-int LTR ERV1 1 777 -4440 * 6183 96 64 10 chr11 108807461 108808567 -41974986 + MER61A-int LTR ERV1 1320 2530 -2687 1685 179 122 16 chr11 108809303 108809689 -41973864 - MSTA LTR MaLR -1 427 1 9114 156 9 27 chr11 108809689 108811296 -41972257 - MSTA-int LTR MaLR 0 1580 3 1382 161 157 13 chr11 108811298 108811603 -41971950 - MSTA LTR MaLR 0 428 80 2003 153 25 30 chr11 108811603 108811969 -41971584 + THE1B LTR MaLR 1 364 0 10375 120 24 3 chr11 108811969 108813516 -41970037 + THE1B-int LTR MaLR 1 1580 0 1747 128 6 56 chr11 108813516 108813853 -41969700 + THE1B LTR MaLR 1 320 -44 315 314 38 13 chr11 108814553 108814712 -41968841 - MIR SINE MIR -3 259 97 273 280 0 0 chr11 108814781 108814874 -41968679 + MER69 DNA AcHobo 2426 2518 -8 1866 199 14 6 chr11 108814925 108815287 -41968266 - MLT1A1 LTR MaLR 0 365 1 209 281 134 12 chr11 108815497 108815579 -41967974 - L2 LINE L2 -224 3048 2957 315 0 0 0 chr11 108815920 108815955 -41967598 + (TG)n Simple_repeat Simple_repeat 1 35 0 269 298 0 32 chr11 108816360 108816454 -41967099 + MER20 DNA MER1_type 1 91 -128 653 256 154 0 chr11 108816467 108816662 -41966891 + MLT1F LTR MaLR 180 404 -138 21 36 0 0 chr11 108816921 108816949 -41966604 + AT_rich Low_complexity Low_complexity 1 28 0 12444 34 4 1 chr11 108817245 108818841 -41964712 - L1PA3 LINE L1 -1909 4237 2637 9118 43 8 0 chr11 108818841 108820757 -41962796 + L1PA3 LINE L1 4249 6171 0 2325 108 0 0 chr11 108820764 108821060 -41962493 + AluSq SINE Alu 1 296 -17 207 0 0 0 chr11 108822489 108822512 -41961041 + (A)n Simple_repeat Simple_repeat 1 23 0 2051 95 0 21 chr11 108822640 108822925 -41960628 + AluY SINE Alu 1 279 -32 387 0 0 0 chr11 108822930 108822973 -41960580 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3788 282 32 13 chr11 108822984 108824131 -41959422 + L1P LINE L1 1971 3158 -2988 1506 226 0 7 chr11 108824131 108824441 -41959112 + AluJo SINE Alu 2 309 -3 3788 282 32 13 chr11 108824441 108824893 -41958660 + L1P LINE L1 3158 3600 -2546 489 208 36 6 chr11 108825428 108825596 -41957957 - MSTB1-int LTR MaLR -1478 173 1 1212 183 65 14 chr11 108825597 108825879 -41957674 - MSTB1 LTR MaLR -7 421 126 696 169 20 14 chr11 108825944 108826092 -41957461 - MSTB1 LTR MaLR -283 149 1 6806 67 6 11 chr11 108826341 108828056 -41955497 + L1PA7 LINE L1 4444 6154 0 22 88 0 0 chr11 108828195 108828252 -41955301 + AT_rich Low_complexity Low_complexity 1 57 0 259 244 37 12 chr11 108828639 108828721 -41954832 + L1MC2 LINE L1 6249 6332 -12 236 288 89 10 chr11 108828753 108829045 -41954508 + L1M4 LINE L1 2848 3162 -2984 22 94 0 0 chr11 108829056 108829120 -41954433 + AT_rich Low_complexity Low_complexity 1 64 0 2292 93 0 3 chr11 108829231 108829533 -41954020 - AluY SINE Alu -8 303 3 246 116 0 0 chr11 108829545 108829588 -41953965 + (TG)n Simple_repeat Simple_repeat 2 44 0 336 289 0 0 chr11 108829602 108829692 -41953861 - L1MC4 LINE L1 -1339 6703 6614 1197 197 107 57 chr11 108831686 108832052 -41951501 + MSTD LTR MaLR 5 388 -8 388 327 172 42 chr11 108832084 108832653 -41950900 + L2 LINE L2 2004 2646 -668 640 271 127 18 chr11 108835872 108836093 -41947460 - MLT1E2 LTR MaLR 0 626 382 524 217 22 13 chr11 108836154 108836379 -41947174 + CT-rich Low_complexity Low_complexity 1 227 0 360 88 0 59 chr11 108836382 108836450 -41947103 - L1M4 LINE L1 -1198 4948 4885 1233 270 37 18 chr11 108836451 108836940 -41946613 - L1MDb LINE L1 -5203 1340 843 241 349 24 0 chr11 108837084 108837167 -41946386 - L1MDb LINE L1 -6120 423 339 1909 175 24 56 chr11 108837508 108837976 -41945577 - LTR1 LTR ERV1 0 785 333 4178 142 70 23 chr11 108838519 108839377 -41944176 + Tigger3b DNA MER2_type 334 1231 0 1676 205 3 3 chr11 108839503 108839815 -41943738 + AluJb SINE Alu 1 312 0 2057 119 17 13 chr11 108839826 108840128 -41943425 + AluSx SINE Alu 1 303 -9 1386 158 16 43 chr11 108840356 108840660 -41942893 - LTR1 LTR ERV1 -489 296 1 204 216 0 0 chr11 108840790 108840827 -41942726 + CT-rich Low_complexity Low_complexity 2 38 0 322 275 48 88 chr11 108840850 108841101 -41942452 - L1MDb LINE L1 -6263 277 37 462 200 123 64 chr11 108841189 108841638 -41941915 - Charlie6 DNA MER1_type -368 3132 2624 336 229 162 22 chr11 108841679 108841858 -41941695 + L1MD3 LINE L1 7770 7973 -22 21 0 0 0 chr11 108842828 108842849 -41940704 + AT_rich Low_complexity Low_complexity 1 21 0 785 229 62 4 chr11 108843462 108843706 -41939847 + L1M4 LINE L1 4678 4935 -1211 2055 117 0 0 chr11 108843708 108844013 -41939540 + AluSx SINE Alu 1 305 0 1323 156 0 12 chr11 108844013 108844256 -41939297 - Tigger4(Zombi) DNA MER2_type -197 2534 2295 199 179 30 0 chr11 108844292 108844359 -41939194 + (TA)n Simple_repeat Simple_repeat 1 69 0 1220 231 59 7 chr11 108844487 108844790 -41938763 + MER70A LTR ERVL 154 472 0 470 310 104 66 chr11 108844796 108844971 -41938582 - L2 LINE L2 -1607 1707 1540 2070 109 21 0 chr11 108844971 108845255 -41938298 - AluSx SINE Alu -10 302 13 470 310 104 66 chr11 108845255 108845502 -41938051 - L2 LINE L2 -1774 1540 1269 25 0 0 0 chr11 108845586 108845611 -41937942 + AT_rich Low_complexity Low_complexity 1 25 0 8989 132 11 19 chr11 108846539 108848133 -41935420 + L1P LINE L1 3028 4609 -1537 3009 216 27 65 chr11 108848642 108849717 -41933836 + L1 LINE L1 4061 5094 -1052 712 251 67 15 chr11 108849841 108850108 -41933445 - L1MEc LINE L1 -2450 3932 3652 726 228 82 31 chr11 108850115 108850543 -41933010 - L1MEc LINE L1 -2870 3512 3073 312 235 70 65 chr11 108850651 108850851 -41932702 - L1MEc LINE L1 -4444 1970 1738 486 161 37 0 chr11 108850856 108850937 -41932616 + THE1-int LTR MaLR 827 910 -670 * 643 263 53 63 chr11 108850917 108851313 -41932240 - L1MEc LINE L1 -4712 1672 1281 266 240 41 8 chr11 108851970 108852082 -41931471 + (TA)n Simple_repeat Simple_repeat 2 120 -6 357 24 0 0 chr11 108852082 108852124 -41931429 + (TG)n Simple_repeat Simple_repeat 2 43 0 266 240 41 8 chr11 108852124 108852132 -41931421 + (TA)n Simple_repeat Simple_repeat 120 126 0 670 140 10 10 chr11 108852136 108852254 -41931299 + MLT1B LTR MaLR 236 352 -22 1790 192 16 29 chr11 108852315 108852701 -41930852 + MLT1B LTR MaLR 1 381 -9 676 140 0 97 chr11 108853026 108853212 -41930341 - AluY SINE Alu -30 281 114 266 50 25 0 chr11 108854029 108854069 -41929484 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 3618 112 13 13 chr11 108854581 108855135 -41928418 - MER41A LTR ERV1 0 554 1 1748 199 39 6 chr11 108855685 108856022 -41927531 + MLT1A1 LTR MaLR 1 348 -17 216 358 37 0 chr11 108856263 108856344 -41927209 - L2 LINE L2 -4 3268 3185 26 0 0 0 chr11 108857185 108857211 -41926342 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr11 108857252 108857283 -41926270 + AT_rich Low_complexity Low_complexity 1 31 0 1684 301 60 11 chr11 108857584 108858153 -41925400 - MER69 DNA AcHobo -1929 597 1 2230 94 0 3 chr11 108858375 108858672 -41924881 - AluSc SINE Alu -13 296 1 1668 207 129 5 chr11 108860309 108860719 -41922834 - LOR1b LTR ERV1 0 461 1 22 0 0 0 chr11 108861701 108861723 -41921830 + AT_rich Low_complexity Low_complexity 1 22 0 2438 280 74 3 chr11 108862146 108863017 -41920536 + L1MD2 LINE L1 5207 6136 -223 4198 95 5 20 chr11 108863599 108864212 -41919341 + L1PA8A LINE L1 5406 6009 -122 24 0 0 0 chr11 108864391 108864415 -41919138 + AT_rich Low_complexity Low_complexity 1 24 0 3502 131 19 47 chr11 108864943 108865684 -41917869 + L1M1 LINE L1 4759 5468 -743 246 322 33 0 chr11 108866940 108867030 -41916523 + L2 LINE L2 2730 2822 -492 * 736 205 60 24 chr11 108867020 108867186 -41916367 + MER5A DNA MER1_type 16 187 -2 786 264 57 8 chr11 108867192 108867457 -41916096 + L2 LINE L2 2808 3085 -228 2833 128 138 12 chr11 108867483 108867992 -41915561 - LTR17 LTR ERV1 0 780 208 212 234 16 16 chr11 108868092 108868156 -41915397 + A-rich Low_complexity Low_complexity 1 64 0 240 143 0 0 chr11 108868333 108868375 -41915178 + (A)n Simple_repeat Simple_repeat 1 42 0 368 227 76 34 chr11 108868390 108868509 -41915044 + MER58 DNA MER1_type 2 125 -2295 2397 214 46 97 chr11 108868524 108869421 -41914132 + L1MC4a LINE L1 5420 6270 -1538 189 0 0 0 chr11 108869535 108869556 -41913997 + (A)n Simple_repeat Simple_repeat 1 21 0 315 312 101 14 chr11 108870346 108870484 -41913069 + L1M4 LINE L1 9 158 -7010 22 88 0 0 chr11 108870711 108870768 -41912785 + AT_rich Low_complexity Low_complexity 1 57 0 6738 69 5 0 chr11 108870907 108872605 -41910948 - L1PA7 LINE L1 0 6154 4444 745 184 27 34 chr11 108872854 108873074 -41910479 + MSTB1 LTR MaLR 1 212 -214 * 1301 183 65 14 chr11 108873067 108873349 -41910204 + MSTB1 LTR MaLR 126 421 -7 4036 270 14 4 chr11 108873350 108874493 -41909060 + MSTB1-int LTR MaLR 1 1209 -442 578 270 57 4 chr11 108874504 108874734 -41908819 + L1M4 LINE L1 2760 3001 -4168 342 0 0 0 chr11 108875194 108875232 -41908321 + (TC)n Simple_repeat Simple_repeat 2 39 0 346 125 47 16 chr11 108875232 108875360 -41908193 + (TA)n Simple_repeat Simple_repeat 2 133 0 21 89 0 0 chr11 108875360 108875416 -41908137 + AT_rich Low_complexity Low_complexity 1 56 0 261 388 18 18 chr11 108875916 108876086 -41907467 + L2 LINE L2 2310 2479 -835 432 0 0 0 chr11 108877292 108877340 -41906213 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 255 229 0 0 chr11 108877343 108877404 -41906149 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 3445 269 60 56 chr11 108877494 108877973 -41905580 + L1MC4 LINE L1 88 563 -6575 1872 153 49 27 chr11 108877973 108878339 -41905214 - THE1C LTR MaLR 0 375 2 8360 133 79 31 chr11 108878340 108879844 -41903709 - THE1C-int LTR MaLR 0 1580 4 1833 161 65 8 chr11 108879847 108880202 -41903351 - THE1C LTR MaLR 0 375 1 3445 269 60 56 chr11 108880202 108882036 -41901517 + L1MC4 LINE L1 564 2545 -4593 5324 246 103 25 chr11 108882214 108884507 -41899046 + L1M4 LINE L1 3858 6328 -839 763 95 26 9 chr11 108884508 108884624 -41898929 + AluSg/x SINE Alu 170 287 -23 798 216 21 46 chr11 108884625 108884842 -41898711 + L1M4 LINE L1 6334 6546 -649 2239 112 3 0 chr11 108884842 108885146 -41898407 + AluSg SINE Alu 1 305 -5 798 216 21 46 chr11 108885146 108885169 -41898384 + L1M4 LINE L1 6546 6568 -627 4344 128 18 7 chr11 108885180 108885913 -41897640 + L1M1 LINE L1 2729 3469 -4096 779 255 43 0 chr11 108885917 108886152 -41897401 - L1 LINE L1 -3532 2614 2370 1811 97 91 47 chr11 108886622 108886920 -41896633 - AluSq SINE Alu 0 313 3 25 31 0 0 chr11 108887597 108887629 -41895924 + AT_rich Low_complexity Low_complexity 1 32 0 326 266 8 8 chr11 108888716 108888834 -41894719 + L1MC4 LINE L1 2526 7514 -1339 2317 85 3 3 chr11 108888876 108889183 -41894370 + AluY SINE Alu 1 307 -4 202 196 39 0 chr11 108889345 108889396 -41894157 + (TA)n Simple_repeat Simple_repeat 1 53 0 532 319 69 0 chr11 108889528 108889744 -41893809 - MIR SINE MIR -30 232 2 266 240 41 8 chr11 108889782 108889894 -41893659 + (TA)n Simple_repeat Simple_repeat 2 120 -6 339 25 0 0 chr11 108889894 108889934 -41893619 + (TG)n Simple_repeat Simple_repeat 2 41 0 266 240 41 8 chr11 108889934 108889942 -41893611 + (TA)n Simple_repeat Simple_repeat 120 126 0 670 140 10 10 chr11 108889946 108890064 -41893489 + MLT1B LTR MaLR 236 352 -22 1772 194 16 29 chr11 108890125 108890511 -41893042 + MLT1B LTR MaLR 1 381 -9 1935 116 7 14 chr11 108890836 108891120 -41892433 - AluSx SINE Alu -30 282 1 249 372 16 0 chr11 108891358 108891479 -41892074 - MIR SINE MIR -3 259 137 253 262 36 4 chr11 108891739 108891932 -41891621 + LTR37B LTR ERV1 200 464 -4 2216 87 0 0 chr11 108892783 108893086 -41890467 + AluSc SINE Alu 3 305 0 200 227 0 0 chr11 108893791 108893835 -41889718 + A-rich Low_complexity Low_complexity 1 44 0 180 388 0 24 chr11 108894111 108894196 -41889357 + MIR3 SINE MIR 7 89 -119 * 386 315 0 0 chr11 108894194 108894305 -41889248 - MIR3 SINE MIR -16 192 82 183 331 49 35 chr11 108894810 108894952 -41888601 + L2 LINE L2 1487 1630 -1684 350 21 21 0 chr11 108895406 108895453 -41888100 + (CA)n Simple_repeat Simple_repeat 2 49 0 203 176 0 0 chr11 108895495 108895529 -41888024 + (CATATA)n Simple_repeat Simple_repeat 1 34 0 284 255 21 75 chr11 108895622 108895810 -41887743 + L1ME3 LINE L1 4490 4667 -1479 249 83 0 0 chr11 108895964 108896000 -41887553 + (TG)n Simple_repeat Simple_repeat 1 36 0 34893 109 10 17 chr11 108896326 108902504 -41881049 - L1PA7 LINE L1 -10 6144 11 5032 134 46 77 chr11 108902622 108903612 -41879941 + L1MA2 LINE L1 5207 6159 -145 2002 131 64 22 chr11 108903612 108903972 -41879581 - THE1C LTR MaLR 0 375 1 5032 134 46 77 chr11 108903972 108904114 -41879439 + L1MA2 LINE L1 6159 6304 0 325 296 74 56 chr11 108904145 108904588 -41878965 + L1ME3 LINE L1 5259 5717 -445 1876 105 4 15 chr11 108904588 108904854 -41878699 - AluY SINE Alu -15 296 34 325 296 74 56 chr11 108904854 108905018 -41878535 + L1ME3 LINE L1 5717 5877 -285 444 318 93 0 chr11 108906483 108906697 -41876856 + L1ME LINE L1 5490 5723 -447 838 192 27 0 chr11 108906709 108906855 -41876698 - LOR1a LTR ERV1 0 497 348 6041 142 17 2 chr11 108906869 108907903 -41875650 - L1P LINE L1 -2084 4062 3013 218 227 0 0 chr11 108908468 108908512 -41875041 + A-rich Low_complexity Low_complexity 1 44 0 30 27 0 0 chr11 108908940 108908977 -41874576 + AT_rich Low_complexity Low_complexity 1 37 0 2895 231 28 44 chr11 108909628 108910449 -41873104 - L1MA9 LINE L1 -38 6274 5467 519 171 124 0 chr11 108910456 108910561 -41872992 + AluJb SINE Alu 1 118 -194 1815 178 72 28 chr11 108910561 108911088 -41872465 - MLT2A1 LTR ERVL -4 550 4 995 198 12 0 chr11 108911088 108911260 -41872293 + AluSg/x SINE Alu 107 280 -32 189 0 0 0 chr11 108911260 108911281 -41872272 + (TAA)n Simple_repeat Simple_repeat 3 23 0 937 171 20 15 chr11 108911287 108911514 -41872039 - L1MA9 LINE L1 -743 5403 5235 4517 210 39 11 chr11 108911515 108912648 -41870905 + L1MA9 LINE L1 4098 5262 -884 1918 140 0 7 chr11 108913184 108913529 -41870024 - AluSq SINE Alu 0 343 1 23 0 0 0 chr11 108913774 108913797 -41869756 + AT_rich Low_complexity Low_complexity 1 23 0 2160 76 48 3 chr11 108913998 108914118 -41869435 + AluY SINE Alu 1 114 -197 254 29 29 0 chr11 108914118 108914153 -41869400 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 2160 76 48 3 chr11 108914153 108914322 -41869231 + AluY SINE Alu 114 303 -8 210 380 51 15 chr11 108915732 108915869 -41867684 + L2 LINE L2 3160 3301 -12 1873 125 0 75 chr11 108915888 108916208 -41867345 - AluSx SINE Alu -16 296 1 226 244 0 0 chr11 108916547 108916592 -41866961 + L3 LINE CR1 1531 1575 -2 2010 128 30 34 chr11 108916931 108917182 -41866371 + LTR28 LTR ERV1 1 252 -1026 4367 57 43 30 chr11 108917182 108917782 -41865771 + LTR14B LTR ERVK 1 608 0 2010 128 30 34 chr11 108917782 108917884 -41865669 + LTR28 LTR ERV1 252 835 -443 1408 263 76 100 chr11 108918090 108918496 -41865057 - L1M4 LINE L1 -5264 1278 864 200 33 0 33 chr11 108918496 108918526 -41865027 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1408 263 76 100 chr11 108918526 108919402 -41864151 - L1M4 LINE L1 -5678 864 26 541 253 21 36 chr11 108919433 108919627 -41863926 - L1MEc LINE L1 -4024 2372 2182 709 75 0 0 chr11 108919746 108919840 -41863713 - AluS SINE Alu -219 94 1 204 287 53 53 chr11 108920275 108920369 -41863184 - MIR SINE MIR -63 145 52 186 43 0 0 chr11 108920739 108920762 -41862791 + (A)n Simple_repeat Simple_repeat 1 23 0 799 48 0 0 chr11 108921733 108921838 -41861715 - L1PA4 LINE L1 -1 6154 6050 1208 194 66 28 chr11 108922660 108922948 -41860605 + AluJo SINE Alu 3 301 -1 322 286 54 44 chr11 108925755 108925958 -41857595 + L1ME LINE L1 5622 5826 -336 555 331 91 56 chr11 108926110 108926230 -41857323 - L2 LINE L2 -1477 1837 1723 1935 219 38 50 chr11 108926230 108926706 -41856847 + MER70A LTR ERVL 3 472 0 555 331 91 56 chr11 108926706 108926887 -41856666 - L2 LINE L2 -1591 1723 1550 2033 113 21 0 chr11 108926887 108927170 -41856383 - AluSx SINE Alu -11 301 13 555 331 91 56 chr11 108927170 108927417 -41856136 - L2 LINE L2 -1764 1550 1269 25 0 0 0 chr11 108927501 108927526 -41856027 + AT_rich Low_complexity Low_complexity 1 25 0 2245 105 0 0 chr11 108927918 108928213 -41855340 - AluSc SINE Alu -14 295 1 216 0 0 0 chr11 108928340 108928364 -41855189 + (T)n Simple_repeat Simple_repeat 1 24 0 6594 89 3 0 chr11 108929470 108930606 -41852947 + L1PA8 LINE L1 5024 6162 -10 1927 139 7 0 chr11 108930854 108931142 -41852411 - AluSx SINE Alu -22 290 1 926 229 68 56 chr11 108931278 108931618 -41851935 - MER2 DNA MER2_type 0 344 1 247 192 19 0 chr11 108931742 108931794 -41851759 - Charlie1a DNA MER1_type -9 1446 1394 32138 122 21 16 chr11 108931813 108937899 -41845654 + L1PA7 LINE L1 38 6150 -4 32 26 0 0 chr11 108937979 108938018 -41845535 + AT_rich Low_complexity Low_complexity 1 39 0 2264 64 0 0 chr11 108938106 108938430 -41845123 - AluY SINE Alu 0 324 1 336 226 65 0 chr11 108938451 108938575 -41844978 - HAL1 LINE L1 -111 2396 2265 1142 276 81 36 chr11 108938605 108939251 -41844302 - HAL1 LINE L1 -334 2173 1499 360 250 45 0 chr11 108939261 108939373 -41844180 - L1MD3 LINE L1 -8 7987 7871 373 211 39 78 chr11 108939420 108939548 -41844005 - HAL1 LINE L1 -1045 1462 1340 1268 179 33 46 chr11 108939733 108940035 -41843518 - AluJo SINE Alu -14 298 1 330 248 36 88 chr11 108940043 108940180 -41843373 - HAL1 LINE L1 -1470 1037 908 23 0 0 0 chr11 108940748 108940771 -41842782 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr11 108940799 108940836 -41842717 + AT_rich Low_complexity Low_complexity 1 37 0 1661 164 57 46 chr11 108940870 108941241 -41842312 + THE1C LTR MaLR 1 375 0 298 102 288 0 chr11 108941541 108941600 -41841953 + MADE1 DNA Mariner 1 76 -4 243 0 0 0 chr11 108941730 108941757 -41841796 + (TG)n Simple_repeat Simple_repeat 2 28 0 2287 58 0 0 chr11 108941757 108942034 -41841519 - AluY SINE Alu -34 277 1 780 213 133 20 chr11 108942145 108942445 -41841108 - Charlie1a DNA MER1_type -42 1413 1080 1533 181 74 21 chr11 108942445 108942771 -41840782 + MER61A LTR ERV1 1 343 0 3114 191 97 17 chr11 108942771 108943490 -41840063 + MER61A-int LTR ERV1 1 777 -4440 * 14650 94 46 46 chr11 108943483 108945377 -41838176 + MER61A-int LTR ERV1 1320 3213 -2004 569 98 0 0 chr11 108945377 108945459 -41838094 - Alu SINE Alu -7 303 222 14650 94 46 46 chr11 108945459 108945790 -41837763 + MER61A-int LTR ERV1 3213 3674 -1543 2268 112 3 0 chr11 108945790 108946094 -41837459 - AluSp SINE Alu -8 305 1 14650 94 46 46 chr11 108946094 108946280 -41837273 + MER61A-int LTR ERV1 3674 3859 -1358 5358 99 91 124 chr11 108946283 108947875 -41835678 - pTR5 LTR ERV1 0 2438 741 * 8220 118 54 16 chr11 108947873 108949182 -41834371 + MER61A-int LTR ERV1 3856 5214 -3 1846 139 54 21 chr11 108949185 108949517 -41834036 + MER61A LTR ERV1 1 343 0 557 226 50 50 chr11 108949522 108949703 -41833850 - Charlie1a DNA MER1_type -374 1081 901 * 1872 265 48 68 chr11 108949701 108950410 -41833143 - Charlie1a DNA MER1_type -758 697 3 463 323 87 13 chr11 108951339 108951568 -41831985 + MIR SINE MIR 14 259 -3 291 299 51 74 chr11 108952008 108952225 -41831328 + L2 LINE L2 3097 3308 -5 28 61 0 0 chr11 108952300 108952349 -41831204 + AT_rich Low_complexity Low_complexity 1 49 0 2252 194 25 0 chr11 108953003 108953452 -41830101 - LOR1b LTR ERV1 0 461 2 324 64 0 0 chr11 108953454 108953501 -41830052 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 9811 67 11 42 chr11 108953506 108954919 -41828634 - SVA Other Other -17 1369 1 21 0 0 0 chr11 108955831 108955852 -41827701 + AT_rich Low_complexity Low_complexity 1 21 0 755 122 0 0 chr11 108956290 108956397 -41827156 + MSTA LTR MaLR 1 107 -321 1888 69 14 47 chr11 108956456 108956760 -41826793 - AluY SINE Alu 0 309 15 277 276 238 11 chr11 108957163 108957348 -41826205 - MLT1H1 LTR MaLR -288 267 62 1955 215 47 33 chr11 108957734 108958306 -41825247 + L1M4 LINE L1 4657 5236 -910 843 204 55 21 chr11 108958296 108958531 -41825022 + L1MC2 LINE L1 6090 6332 -12 * 369 289 89 7 chr11 108958563 108958854 -41824699 + L1 LINE L1 2848 3162 -2984 22 94 0 0 chr11 108958865 108958929 -41824624 + AT_rich Low_complexity Low_complexity 1 64 0 1770 155 41 0 chr11 108959040 108959330 -41824223 - AluSg SINE Alu -8 302 1 25 31 0 0 chr11 108959482 108959514 -41824039 + AT_rich Low_complexity Low_complexity 1 32 0 208 233 0 0 chr11 108960924 108960967 -41822586 + (TG)n Simple_repeat Simple_repeat 2 44 0 454 319 55 31 chr11 108962376 108962630 -41820923 + MIR SINE MIR 3 262 0 315 316 62 77 chr11 108962757 108962966 -41820587 - MIR SINE MIR -23 239 34 224 349 83 18 chr11 108962938 108963047 -41820506 + MIR SINE MIR 30 145 -63 * 1894 176 79 0 chr11 108963054 108963509 -41820044 + L1MA8 LINE L1 3943 4433 -1713 * 5181 170 64 4 chr11 108963506 108964814 -41818739 + L1MA8 LINE L1 4826 6267 -24 868 290 24 4 chr11 108965131 108965380 -41818173 - MIR SINE MIR -10 252 1 21 82 0 0 chr11 108966778 108966827 -41816726 + AT_rich Low_complexity Low_complexity 1 49 0 239 327 113 13 chr11 108968569 108968719 -41814834 + MIR SINE MIR 54 218 -44 2326 78 0 3 chr11 108969079 108969375 -41814178 - AluY SINE Alu -13 298 4 5182 159 29 24 chr11 108971393 108972794 -41810759 - L1PA16 LINE L1 0 6166 4755 4081 191 20 9 chr11 108972786 108973647 -41809906 + L1PA16 LINE L1 3893 4762 -1384 * 498 211 149 62 chr11 108973662 108973823 -41809730 + FAM SINE Alu 1 175 0 252 0 0 0 chr11 108974391 108974419 -41809134 + (CA)n Simple_repeat Simple_repeat 1 28 0 1243 253 28 98 chr11 108974424 108974983 -41808570 - L1ME1 LINE L1 -94 6072 5567 1867 142 3 50 chr11 108974983 108975301 -41808252 + AluSg SINE Alu 1 303 -7 1243 253 28 98 chr11 108975301 108975387 -41808166 - L1ME1 LINE L1 -599 5567 5477 797 250 7 29 chr11 108975422 108975694 -41807859 - L1ME1 LINE L1 -3279 2867 2602 285 233 0 0 chr11 108975697 108975757 -41807796 - Tigger6b DNA MER2_type 0 1597 1538 * 723 177 39 0 chr11 108975755 108975885 -41807668 - Tigger6b DNA MER2_type -796 801 667 232 162 44 0 chr11 108976069 108976137 -41807416 + (TA)n Simple_repeat Simple_repeat 1 71 0 1843 289 77 11 chr11 108977047 108977618 -41805935 + L1M2b LINE L1 175 783 -6426 2100 202 39 12 chr11 108977670 108978427 -41805126 + L1M2b LINE L1 2781 3557 -3651 3098 179 28 3 chr11 108978456 108979093 -41804460 + L1MA5 LINE L1 5648 6300 0 27 29 0 0 chr11 108979734 108979768 -41803785 + AT_rich Low_complexity Low_complexity 1 34 0 792 213 48 44 chr11 108980189 108980461 -41803092 - Charlie5 DNA MER1_type 0 2624 2352 285 267 99 52 chr11 108980459 108980631 -41802922 - Charlie5 DNA MER1_type -2412 200 21 * 608 260 65 12 chr11 108980648 108980817 -41802736 + MER45A DNA AcHobo 1 178 0 44 35 0 0 chr11 108981610 108981668 -41801885 + AT_rich Low_complexity Low_complexity 1 58 0 343 315 88 28 chr11 108982139 108982320 -41801233 - MIR SINE MIR -18 244 53 327 229 0 12 chr11 108982357 108982440 -41801113 - MER46C DNA MER2_type -21 317 236 31 68 0 0 chr11 108982448 108982507 -41801046 + AT_rich Low_complexity Low_complexity 1 59 0 388 249 99 61 chr11 108982519 108982732 -41800821 - MER46C DNA MER2_type -115 223 3 25 0 0 0 chr11 108983982 108984007 -41799546 + AT_rich Low_complexity Low_complexity 1 25 0 2040 116 0 0 chr11 108984439 108984716 -41798837 + AluSx SINE Alu 1 277 -35 186 71 0 0 chr11 108984717 108984745 -41798808 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1173 79 7 0 chr11 108985602 108985754 -41797799 + AluSx SINE Alu 1 153 -159 2152 117 3 3 chr11 108985926 108986225 -41797328 + AluSx SINE Alu 1 299 -13 5128 227 23 13 chr11 108986567 108987933 -41795620 - L1 LINE L1 -897 5249 3871 6371 184 29 3 chr11 108987933 108989149 -41794404 - HSMAR2 DNA Mariner -55 1247 1 882 189 41 0 chr11 108989435 108989604 -41793949 + MER2 DNA MER2_type 11 186 -159 652 241 0 44 chr11 108989616 108989819 -41793734 - L1 LINE L1 -1000 5146 4953 686 229 13 6 chr11 108989821 108989978 -41793575 + MER2 DNA MER2_type 188 345 0 202 267 62 123 chr11 108990470 108990616 -41792937 + MIR SINE MIR 114 250 -12 4790 185 49 39 chr11 108990696 108991674 -41791879 - L1PB4 LINE L1 -1 6155 5189 195 42 0 0 chr11 108991674 108991698 -41791855 + (TTA)n Simple_repeat Simple_repeat 2 25 0 4790 185 49 39 chr11 108991698 108992711 -41790842 - L1PB4 LINE L1 -967 5189 4155 708 196 31 6 chr11 108992708 108992871 -41790682 + L1 LINE L1 2863 3029 -3117 * 21 0 0 0 chr11 108993953 108993974 -41789579 + AT_rich Low_complexity Low_complexity 1 21 0 452 278 23 23 chr11 108994471 108994604 -41788949 + MER45A DNA AcHobo 46 178 0 185 250 21 0 chr11 108994611 108994659 -41788894 + MER5B DNA MER1_type 93 141 -37 1039 335 35 12 chr11 108995080 108995507 -41788046 + LTR16B LTR ERVL 13 449 -15 4600 225 59 19 chr11 108995910 108996190 -41787363 + L1 LINE L1 3088 3355 -2791 1547 205 22 40 chr11 108996190 108996560 -41786993 - MLT1A1 LTR MaLR -2 363 1 4600 225 59 19 chr11 108996560 108997413 -41786140 + L1 LINE L1 3355 4289 -1857 369 0 0 0 chr11 108997413 108997454 -41786099 + (CA)n Simple_repeat Simple_repeat 2 42 0 4600 225 59 19 chr11 108997454 108997699 -41785854 + L1 LINE L1 4289 4523 -1623 753 99 0 0 chr11 108997717 108997818 -41785735 + AluY SINE Alu 32 132 -179 180 77 0 0 chr11 108997818 108997844 -41785709 + (A)n Simple_repeat Simple_repeat 1 26 0 1251 120 0 0 chr11 108997845 108998020 -41785533 + AluY SINE Alu 128 302 -9 701 269 18 0 chr11 108998027 108998198 -41785355 + L1 LINE L1 4552 4725 -1421 36 53 0 0 chr11 108998278 108998335 -41785218 + AT_rich Low_complexity Low_complexity 1 57 0 2371 72 0 10 chr11 108998510 108998814 -41784739 - AluY SINE Alu -10 301 1 195 301 19 103 chr11 108999669 108999825 -41783728 + L2 LINE L2 3171 3313 0 1047 75 0 0 chr11 109000051 109000185 -41783368 - L1PA10 LINE L1 -10 6158 6025 291 311 22 0 chr11 109000974 109001064 -41782489 - MER5A DNA MER1_type -80 109 18 518 222 29 41 chr11 109001165 109001336 -41782217 + L1ME LINE L1 1936 2104 -4292 799 271 119 5 chr11 109001621 109002056 -41781497 + L1ME LINE L1 2401 2885 -3330 228 263 165 8 chr11 109002128 109002261 -41781292 + L1ME LINE L1 4959 5112 -1103 303 238 38 0 chr11 109002317 109002397 -41781156 + L1ME LINE L1 5187 5269 -946 1634 142 8 0 chr11 109002400 109002640 -41780913 + AluSx SINE Alu 1 242 -70 570 239 119 24 chr11 109002656 109003070 -41780483 + L1ME LINE L1 5257 5702 -529 15294 200 22 10 chr11 109003171 109003617 -41779936 + L1MA3 LINE L1 735 1174 -6391 2389 82 0 19 chr11 109003617 109003933 -41779620 - AluSg SINE Alu 0 310 1 15294 200 22 10 chr11 109003933 109006762 -41776791 + L1MA3 LINE L1 1174 4119 -3446 180 0 0 0 chr11 109006762 109006782 -41776771 + (CAA)n Simple_repeat Simple_repeat 2 21 0 15294 200 22 10 chr11 109006782 109009431 -41774122 + L1MA3 LINE L1 4119 6735 -830 1591 191 133 16 chr11 109009431 109009814 -41773739 - MSTA LTR MaLR 0 428 1 8683 171 5 38 chr11 109009814 109011442 -41772111 - MSTA-int LTR MaLR 0 1580 3 1759 157 124 38 chr11 109011445 109011571 -41771982 - MSTA LTR MaLR 0 428 314 2039 138 36 28 chr11 109011571 109011932 -41771621 - THE1B LTR MaLR 0 364 1 10336 127 10 7 chr11 109011932 109013507 -41770046 - THE1B-int LTR MaLR 0 1580 1 2280 136 8 30 chr11 109013507 109013876 -41769677 - THE1B LTR MaLR 0 364 4 1759 157 124 38 chr11 109013876 109014141 -41769412 - MSTA LTR MaLR -113 315 1 5220 170 17 3 chr11 109014143 109015121 -41768432 + L1MA3 LINE L1 6733 7724 0 262 330 21 10 chr11 109015131 109015228 -41768325 - MIR SINE MIR -151 111 14 706 248 4 84 chr11 109015411 109015649 -41767904 + MER58A DNA MER1_type 3 221 -3 207 0 0 0 chr11 109016274 109016297 -41767256 + (T)n Simple_repeat Simple_repeat 1 23 0 27 29 0 0 chr11 109017084 109017118 -41766435 + AT_rich Low_complexity Low_complexity 1 34 0 274 335 131 33 chr11 109017377 109017864 -41765689 - L2 LINE L2 -1184 2130 1596 331 337 37 6 chr11 109018458 109018621 -41764932 - MIR SINE MIR -56 206 39 246 315 14 0 chr11 109019012 109019085 -41764468 + MIR SINE MIR 160 233 -29 234 0 0 0 chr11 109019108 109019134 -41764419 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2771 175 108 125 chr11 109019673 109019982 -41763571 + L1MC3 LINE L1 6794 7107 -678 280 218 13 39 chr11 109019982 109020060 -41763493 + MLT1F1 LTR MaLR 33 108 -459 2771 175 108 125 chr11 109020060 109020675 -41762878 + L1MC3 LINE L1 7107 7778 -7 22 0 0 0 chr11 109020794 109020816 -41762737 + AT_rich Low_complexity Low_complexity 1 22 0 502 309 77 16 chr11 109022597 109022791 -41760762 + LTR16A1 LTR ERVL 252 457 0 26 104 0 0 chr11 109023393 109023489 -41760064 + AT_rich Low_complexity Low_complexity 1 96 0 488 221 0 0 chr11 109023626 109023712 -41759841 - MER5A DNA MER1_type 0 189 104 248 274 0 0 chr11 109023718 109023780 -41759773 + CT-rich Low_complexity Low_complexity 2 63 0 28 0 0 0 chr11 109024196 109024224 -41759329 + AT_rich Low_complexity Low_complexity 1 28 0 246 329 98 0 chr11 109024792 109024874 -41758679 + MIR SINE MIR 52 141 -121 1828 162 60 28 chr11 109025457 109025809 -41757744 + THE1B LTR MaLR 1 363 -1 9552 117 4 3 chr11 109025817 109027181 -41756372 + THE1B-int LTR MaLR 216 1580 0 1948 148 48 28 chr11 109027181 109027538 -41756015 + THE1B LTR MaLR 1 364 0 880 252 59 5 chr11 109027918 109028343 -41755210 + L1MC1 LINE L1 2854 3301 -2845 728 234 53 53 chr11 109028347 109028574 -41754979 - MLT1A2 LTR MaLR -144 230 4 4958 222 35 36 chr11 109028577 109028690 -41754863 + L1MC1 LINE L1 4302 4414 -1919 2118 139 128 8 chr11 109028690 109029072 -41754481 + MSTA LTR MaLR 1 428 0 7761 203 32 9 chr11 109029072 109030687 -41752866 + MSTA-int LTR MaLR 1 1651 0 1965 162 128 8 chr11 109030687 109031069 -41752484 + MSTA LTR MaLR 1 428 0 4958 222 35 36 chr11 109031069 109032981 -41750572 + L1MC1 LINE L1 4411 6315 -18 2331 73 10 0 chr11 109032993 109033293 -41750260 + AluY SINE Alu 1 303 -8 4134 222 37 41 chr11 109033333 109033875 -41749678 + L1M4 LINE L1 3850 4393 -1781 2360 42 3 3 chr11 109033875 109034158 -41749395 + AluY SINE Alu 28 310 -1 4134 222 37 41 chr11 109034158 109035348 -41748205 + L1M4 LINE L1 4393 5582 -592 1500 210 3 19 chr11 109035348 109035658 -41747895 - AluJo SINE Alu -4 308 4 4134 222 37 41 chr11 109035658 109035877 -41747676 + L1M4 LINE L1 5582 5800 -374 6367 192 68 17 chr11 109035877 109038391 -41745162 - L1PA16 LINE L1 0 6166 3531 621 127 42 34 chr11 109038391 109038509 -41745044 + MLT2A2 LTR ERVL 295 413 -40 227 279 35 0 chr11 109038519 109038605 -41744948 + L1MC4 LINE L1 6615 6703 -1339 322 21 125 0 chr11 109038638 109038686 -41744867 + MLT2A2 LTR ERVL 400 453 0 9668 228 65 10 chr11 109038703 109040961 -41742592 + ERVL-A2 LTR ERVL 282 2662 -3102 1178 223 24 79 chr11 109040966 109041347 -41742206 + MLT1A1 LTR MaLR 6 365 0 2672 211 12 14 chr11 109041347 109041907 -41741646 + MLT1A1-int LTR MaLR 1 559 -1176 1578 190 5 92 chr11 109041942 109042311 -41741242 + ERVL-A2 LTR ERVL 2803 3139 -2625 4714 164 35 26 chr11 109042316 109043303 -41740250 + L1MA8 LINE L1 5285 6280 -11 1225 233 43 0 chr11 109043364 109043622 -41739931 + ERVL-A2 LTR ERVL 3135 3403 -2361 1845 139 35 43 chr11 109043622 109043997 -41739556 + ERVL-B1 LTR ERVL 5381 5752 -12 1633 224 21 94 chr11 109044002 109044483 -41739070 + MLT2B1 LTR ERVL 1 446 -74 318 98 0 0 chr11 109044563 109044614 -41738939 + (CA)n Simple_repeat Simple_repeat 2 52 0 1902 266 111 41 chr11 109044614 109045824 -41737729 + L1ME2 LINE L1 3899 5320 -844 2161 137 0 3 chr11 109045824 109046137 -41737416 - AluSx SINE Alu 0 312 1 1902 266 111 41 chr11 109046137 109047023 -41736530 + L1ME2 LINE L1 5320 6142 -22 352 320 25 0 chr11 109047057 109047179 -41736374 - MIR SINE MIR -95 167 43 1625 183 14 111 chr11 109047886 109048103 -41735450 + MLT1B LTR MaLR 1 237 -153 1625 95 130 4 chr11 109048103 109048365 -41735188 + AluSc SINE Alu 2 296 -3 2319 76 0 7 chr11 109048365 109048666 -41734887 + AluY SINE Alu 1 299 -12 1625 183 14 111 chr11 109048666 109048879 -41734674 + MLT1B LTR MaLR 235 390 0 180 152 0 0 chr11 109048970 109049003 -41734550 + (CA)n Simple_repeat Simple_repeat 2 34 0 402 248 39 59 chr11 109049215 109049368 -41734185 - MIR SINE MIR -38 224 75 426 309 84 36 chr11 109049551 109049910 -41733643 - L1MC4a LINE L1 -1922 5886 5511 2457 177 24 24 chr11 109050605 109051159 -41732394 - L1MA7 LINE L1 -2 6289 5736 722 335 99 33 chr11 109051711 109052210 -41731343 - L2 LINE L2 -4 3309 2777 1145 291 64 75 chr11 109052220 109052336 -41731217 + MLT1E LTR MaLR 48 164 -429 312 120 0 0 chr11 109052336 109052386 -41731167 + (TG)n Simple_repeat Simple_repeat 2 51 0 1145 291 64 75 chr11 109052386 109052818 -41730735 + MLT1E LTR MaLR 164 590 -3 994 259 56 43 chr11 109052824 109053127 -41730426 - L2 LINE L2 -513 2801 2490 1703 175 36 0 chr11 109053127 109053407 -41730146 - AluJb SINE Alu -20 292 3 994 259 56 43 chr11 109053407 109053497 -41730056 - L2 LINE L2 -824 2490 2403 514 271 18 47 chr11 109053933 109054103 -41729450 + MLT1E2 LTR MaLR 283 447 -179 6419 156 11 4 chr11 109054371 109055843 -41727710 - L1MA3 LINE L1 0 6305 4822 * 9047 144 17 33 chr11 109055826 109057382 -41726171 + THE1C-int LTR MaLR 50 1580 0 2031 158 63 0 chr11 109057397 109057745 -41725808 + THE1C LTR MaLR 1 370 -5 180 0 0 0 chr11 109058477 109058497 -41725056 + (T)n Simple_repeat Simple_repeat 1 20 0 4319 228 48 46 chr11 109060487 109061132 -41722421 - L1MC1 LINE L1 -97 6516 5874 1703 171 4 7 chr11 109061132 109061407 -41722146 + AluJb SINE Alu 1 274 -38 4319 228 48 46 chr11 109061407 109061627 -41721926 - L1MC1 LINE L1 -739 5874 5656 309 51 0 0 chr11 109061627 109061666 -41721887 + (TA)n Simple_repeat Simple_repeat 1 39 0 4319 228 48 46 chr11 109061666 109062471 -41721082 - L1MC1 LINE L1 -957 5656 4854 2463 59 0 7 chr11 109062471 109062776 -41720777 - AluY SINE Alu -3 308 6 4319 228 48 46 chr11 109062776 109063776 -41719777 - L1MC1 LINE L1 -1759 4854 3828 1258 254 72 40 chr11 109063780 109064472 -41719081 - L1MC1 LINE L1 -3271 3155 2442 1309 163 56 38 chr11 109064472 109064760 -41718793 + AluJo SINE Alu 1 293 -19 2979 172 69 22 chr11 109064783 109065905 -41717648 - L1MC1 LINE L1 -3976 2450 1183 4020 258 34 15 chr11 109065922 109067439 -41716114 - L1M4 LINE L1 -1957 4425 2881 509 252 36 0 chr11 109067428 109067567 -41715986 - L1 LINE L1 -2544 3602 3459 * 6170 179 50 37 chr11 109067573 109068010 -41715543 - L1M4 LINE L1 -3516 2866 2436 3401 139 59 18 chr11 109068010 109068334 -41715219 - MER39B LTR ERV1 0 653 344 2017 77 0 12 chr11 109068334 109068620 -41714933 - AluY SINE Alu 0 310 28 3401 139 59 18 chr11 109068620 109068919 -41714634 - MER39B LTR ERV1 -309 344 3 6170 179 50 37 chr11 109068919 109070207 -41713346 - L1M4 LINE L1 -3946 2436 1166 2278 106 0 3 chr11 109070207 109070519 -41713034 - AluSq SINE Alu -2 311 1 6170 179 50 37 chr11 109070519 109070665 -41712888 - L1M4 LINE L1 -5216 1166 1023 303 49 0 0 chr11 109070665 109070706 -41712847 + (TG)n Simple_repeat Simple_repeat 2 42 0 6170 179 50 37 chr11 109070706 109071301 -41712252 - L1M4 LINE L1 -5359 1023 5 2192 143 48 46 chr11 109071454 109071887 -41711666 - MER61C LTR ERV1 0 434 1 23 0 0 0 chr11 109071895 109071918 -41711635 + AT_rich Low_complexity Low_complexity 1 23 0 1655 199 0 0 chr11 109071956 109072253 -41711300 - AluSx SINE Alu -15 297 1 243 0 0 0 chr11 109073057 109073084 -41710469 + (TG)n Simple_repeat Simple_repeat 2 28 0 28 29 0 0 chr11 109073672 109073707 -41709846 + AT_rich Low_complexity Low_complexity 1 35 0 1434 181 16 30 chr11 109073853 109074156 -41709397 + AluJb SINE Alu 1 299 -13 19148 213 33 36 chr11 109074860 109079407 -41704146 + L1MA3 LINE L1 20 4581 -3143 1811 161 10 3 chr11 109079407 109079711 -41703842 + AluSx SINE Alu 7 312 0 19148 213 33 36 chr11 109079711 109081926 -41701627 + L1MA3 LINE L1 4581 6761 -963 2019 143 0 0 chr11 109081926 109082220 -41701333 + AluSg SINE Alu 1 294 -16 19148 213 33 36 chr11 109082220 109083181 -41700372 + L1MA3 LINE L1 6761 7724 0 26 0 0 0 chr11 109083181 109083207 -41700346 + AT_rich Low_complexity Low_complexity 1 26 0 3021 113 23 4 chr11 109083389 109083859 -41699694 + L1PA13 LINE L1 5683 6161 -2 206 159 63 32 chr11 109085367 109085430 -41698123 + (TATATG)n Simple_repeat Simple_repeat 1 65 0 401 368 69 28 chr11 109085719 109086344 -41697209 + L2 LINE L2 2656 3300 -13 * 436 254 36 36 chr11 109086343 109086481 -41697072 - L2 LINE L2 -1 3312 3175 1516 189 11 0 chr11 109087004 109087289 -41696264 + AluJo SINE Alu 1 288 -24 264 295 57 9 chr11 109087857 109087962 -41695591 - L1MC/D LINE L1 -2085 5723 5614 871 260 121 30 chr11 109088167 109088571 -41694982 - MLT1C LTR MaLR 0 467 27 348 24 0 0 chr11 109088716 109088757 -41694796 + (CA)n Simple_repeat Simple_repeat 2 42 0 963 271 22 76 chr11 109090450 109090819 -41692734 + LTR16A LTR ERVL 97 445 -5 562 341 61 49 chr11 109091163 109091496 -41692057 + HERV16 LTR ERVL 382 726 -4270 423 0 0 0 chr11 109091496 109091543 -41692010 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 562 341 61 49 chr11 109091543 109091780 -41691773 + HERV16 LTR ERVL 726 959 -4037 2233 121 0 0 chr11 109091781 109092088 -41691465 + AluSc SINE Alu 1 307 -2 26 30 0 0 chr11 109092102 109092135 -41691418 + AT_rich Low_complexity Low_complexity 1 33 0 1481 334 110 23 chr11 109092522 109093422 -41690131 + HERV16 LTR ERVL 985 1962 -3034 606 356 13 19 chr11 109093575 109093892 -41689661 - HERVL LTR ERVL -1477 4177 3863 226 211 0 0 chr11 109093912 109093950 -41689603 + (CACG)n Simple_repeat Simple_repeat 2 39 0 335 309 36 60 chr11 109094313 109094481 -41689072 - HERVL LTR ERVL -2274 3490 3327 621 350 92 15 chr11 109094876 109095342 -41688211 - HERVL LTR ERVL -2588 2408 1907 201 182 0 0 chr11 109095380 109095413 -41688140 + (TA)n Simple_repeat Simple_repeat 1 33 0 2065 144 60 6 chr11 109095667 109096014 -41687539 - LTR47A LTR ERVL -86 366 1 1032 182 98 97 chr11 109096104 109096573 -41686980 - LTR23-int LTR ERV1 -258 4865 4464 267 237 0 0 chr11 109096938 109096997 -41686556 + MLT1H LTR MaLR 491 549 0 2327 50 0 0 chr11 109097165 109097474 -41686079 + AluY SINE Alu 1 309 0 1656 153 85 24 chr11 109097557 109097897 -41685656 - MER46B DNA MER2_type 0 236 1 227 257 54 0 chr11 109098626 109098700 -41684853 + MLT1H LTR MaLR 29 106 -443 3420 36 2 0 chr11 109099724 109100139 -41683414 - L1PA4 LINE L1 -3 6152 5737 6444 32 0 0 chr11 109100139 109100910 -41682643 + L1P LINE L1 3675 4445 -1701 26 50 0 0 chr11 109101087 109101127 -41682426 + AT_rich Low_complexity Low_complexity 1 40 0 210 37 0 0 chr11 109101130 109101157 -41682396 + (TA)n Simple_repeat Simple_repeat 2 28 0 1075 245 35 89 chr11 109101676 109102284 -41681269 - L1ME1 LINE L1 -27 6139 5565 720 127 0 8 chr11 109102386 109102512 -41681041 + L1MA3 LINE L1 3345 3469 -4096 1589 187 45 34 chr11 109102516 109103067 -41680486 - L1 LINE L1 -3532 4033 3463 1945 100 15 0 chr11 109103083 109103352 -41680201 - AluSp SINE Alu -2 311 39 5149 131 53 66 chr11 109103369 109104583 -41678970 + L1MA3 LINE L1 6274 7554 -170 2134 120 7 0 chr11 109104583 109104875 -41678678 + AluSq SINE Alu 1 294 -19 5149 131 53 66 chr11 109104875 109105044 -41678509 + L1MA3 LINE L1 7554 7724 0 906 315 38 66 chr11 109107235 109107745 -41675808 + L1PA16 LINE L1 788 1278 -6296 2048 103 19 29 chr11 109107745 109108056 -41675497 + AluSx SINE Alu 5 312 0 906 315 38 66 chr11 109108056 109108180 -41675373 + L1PA16 LINE L1 1278 1404 -6170 265 356 0 0 chr11 109108263 109108367 -41675186 + L1PA16 LINE L1 2080 2183 -5398 12759 242 25 25 chr11 109108588 109109799 -41673754 + L1PA16 LINE L1 2182 3392 -4212 2165 75 11 14 chr11 109109799 109110079 -41673474 + AluY SINE Alu 1 279 -32 423 0 0 0 chr11 109110084 109110131 -41673422 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 12759 242 25 25 chr11 109110131 109111287 -41672266 + L1PA16 LINE L1 3396 4551 -3053 1538 208 0 7 chr11 109111287 109111585 -41671968 + AluJo SINE Alu 1 296 -16 12759 242 25 25 chr11 109111585 109114095 -41669458 + L1PA16 LINE L1 4551 7090 -514 2825 171 8 6 chr11 109114166 109114674 -41668879 + L1PA16 LINE L1 7087 7595 -9 25 31 0 0 chr11 109115667 109115699 -41667854 + AT_rich Low_complexity Low_complexity 1 32 0 13903 150 24 4 chr11 109116078 109118448 -41665105 - Tigger1 DNA MER2_type 0 2418 3 1845 180 38 3 chr11 109118743 109119088 -41664465 + MLT1B LTR MaLR 33 389 -1 463 318 0 78 chr11 109119172 109119364 -41664189 + MER45A DNA AcHobo 2 178 0 273 163 0 0 chr11 109119478 109119527 -41664026 + (TG)n Simple_repeat Simple_repeat 2 50 0 258 203 40 14 chr11 109119961 109120035 -41663518 + HAL1 LINE L1 1221 1296 -1211 21 0 0 0 chr11 109120121 109120142 -41663411 + AT_rich Low_complexity Low_complexity 1 21 0 255 338 0 0 chr11 109120447 109120524 -41663029 + L2 LINE L2 3234 3310 -3 26 64 0 0 chr11 109120613 109120660 -41662893 + AT_rich Low_complexity Low_complexity 1 47 0 240 244 35 104 chr11 109121157 109121219 -41662334 + HAL1 LINE L1 1290 1342 -1165 2202 108 3 0 chr11 109121219 109121514 -41662039 + AluSg SINE Alu 1 296 -14 240 244 35 104 chr11 109121514 109121566 -41661987 + HAL1 LINE L1 1342 1396 -1111 187 123 12 62 chr11 109121601 109121682 -41661871 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 1595 161 0 4 chr11 109121718 109121973 -41661580 - AluJb SINE Alu -21 291 38 199 179 30 0 chr11 109121977 109122044 -41661509 + (TA)n Simple_repeat Simple_repeat 2 70 0 2128 162 18 49 chr11 109122080 109122323 -41661230 + Tigger4(Zombi) DNA MER2_type 2295 2521 -210 2024 125 0 0 chr11 109122323 109122628 -41660925 - AluSx SINE Alu 0 305 1 2128 162 18 49 chr11 109122628 109122833 -41660720 + Tigger4(Zombi) DNA MER2_type 2521 2731 0 234 355 24 20 chr11 109122875 109122999 -41660554 + MER5A DNA MER1_type 1 137 -52 2008 127 30 46 chr11 109123547 109123917 -41659636 + MER34B LTR ERV1 1 364 -201 234 160 100 0 chr11 109123918 109123968 -41659585 + MER34B LTR ERV1 511 565 0 22794 47 1 3 chr11 109124967 109128617 -41654936 - L1PA5 LINE L1 -2 6152 2497 911 205 37 55 chr11 109128717 109128990 -41654563 + L1MB7 LINE L1 5789 6056 -128 2303 110 0 19 chr11 109128992 109129311 -41654242 + AluSq SINE Alu 1 313 0 5252 214 57 0 chr11 109129316 109130325 -41653228 - L1M1 LINE L1 -6370 1195 130 829 110 0 0 chr11 109130325 109130443 -41653110 - AluSq SINE Alu -12 301 184 10119 30 1 3 chr11 109130443 109132442 -41651111 + L1PA4 LINE L1 4158 6155 0 1513 96 0 5 chr11 109132459 109132656 -41650897 - AluSq SINE Alu -117 196 1 558 215 0 23 chr11 109132656 109132786 -41650767 - L1M1 LINE L1 -7428 137 11 1098 281 112 43 chr11 109132815 109133331 -41650222 + MLT1H1 LTR MaLR 1 552 -3 356 200 19 105 chr11 109133338 109133443 -41650110 + MIR SINE MIR 145 240 -22 27 49 0 0 chr11 109133526 109133567 -41649986 + AT_rich Low_complexity Low_complexity 1 41 0 562 181 128 95 chr11 109133595 109133838 -41649715 - ORSL DNA AcHobo -24 251 1 26 0 0 0 chr11 109135258 109135284 -41648269 + AT_rich Low_complexity Low_complexity 1 26 0 275 274 11 42 chr11 109135721 109135816 -41647737 + MIR SINE MIR 161 252 -10 193 210 32 0 chr11 109135832 109135894 -41647659 + CT-rich Low_complexity Low_complexity 4 67 0 270 241 98 0 chr11 109137590 109137702 -41645851 - L1M4 LINE L1 -807 5339 5217 235 290 0 58 chr11 109137719 109137788 -41645765 + L2 LINE L2 3158 3222 -50 311 310 66 6 chr11 109138136 109138295 -41645258 - MIR SINE MIR -30 232 62 228 325 24 12 chr11 109139151 109139234 -41644319 + MER5B DNA MER1_type 31 114 -64 21 36 0 0 chr11 109139664 109139692 -41643861 + AT_rich Low_complexity Low_complexity 1 28 0 301 276 37 74 chr11 109140139 109140302 -41643251 + L1MCb LINE L1 85 569 -5853 831 194 97 81 chr11 109140341 109140681 -41642872 + MLT1A1 LTR MaLR 1 422 -6 2263 155 72 83 chr11 109141163 109141678 -41641875 - LTR22 LTR ERVK 0 509 1 21640 98 17 3 chr11 109141679 109144830 -41638723 - HERVK22 LTR ERVK -1 6836 2314 4781 112 16 0 chr11 109144885 109145562 -41637991 - HERVK22 LTR ERVK -6149 688 1 2626 146 79 21 chr11 109145563 109146043 -41637510 - LTR22 LTR ERVK -1 508 1 317 237 134 111 chr11 109146064 109146406 -41637147 + L1MCb LINE L1 872 1221 -5202 26 50 0 0 chr11 109147083 109147123 -41636430 + AT_rich Low_complexity Low_complexity 1 40 0 282 56 0 0 chr11 109147192 109147228 -41636325 + (CAT)n Simple_repeat Simple_repeat 1 36 0 458 242 33 20 chr11 109147644 109147797 -41635756 - MER112 DNA MER1_type -100 160 6 246 62 0 0 chr11 109148262 109148294 -41635259 + (CATATA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr11 109148312 109148333 -41635220 + AT_rich Low_complexity Low_complexity 1 21 0 189 309 0 0 chr11 109148470 109148525 -41635028 - MIR SINE MIR -109 153 99 21 0 0 0 chr11 109148698 109148719 -41634834 + AT_rich Low_complexity Low_complexity 1 21 0 193 325 183 8 chr11 109149528 109149648 -41633905 - MER5A DNA MER1_type 0 189 49 788 206 62 64 chr11 109151084 109151412 -41632141 - MSTD LTR MaLR -2 394 1 25 51 0 0 chr11 109152341 109152380 -41631173 + AT_rich Low_complexity Low_complexity 1 39 0 33 25 0 0 chr11 109152511 109152551 -41631002 + AT_rich Low_complexity Low_complexity 1 40 0 213 209 0 0 chr11 109152775 109152818 -41630735 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 335 271 87 64 chr11 109154878 109155389 -41628164 - L1MCa LINE L1 -4924 1630 1135 295 158 0 0 chr11 109156113 109156170 -41627383 - Alu SINE Alu 0 302 246 23 33 0 0 chr11 109156171 109156201 -41627352 + AT_rich Low_complexity Low_complexity 1 30 0 365 306 52 63 chr11 109156683 109157138 -41626415 - L1MCa LINE L1 -5621 424 40 3740 98 0 4 chr11 109157293 109157806 -41625747 - MER9 LTR ERVK 0 511 1 21 82 0 0 chr11 109158661 109158710 -41624843 + AT_rich Low_complexity Low_complexity 1 49 0 252 351 0 0 chr11 109159049 109159126 -41624427 + L2 LINE L2 3237 3313 0 213 209 0 0 chr11 109160512 109160555 -41622998 + (CA)n Simple_repeat Simple_repeat 1 43 0 243 323 55 47 chr11 109160651 109160778 -41622775 - MIR SINE MIR -133 129 2 216 209 0 0 chr11 109161263 109161306 -41622247 + (TAA)n Simple_repeat Simple_repeat 1 43 0 382 382 53 16 chr11 109161340 109161586 -41621967 + LTR16C LTR ERVL 1 255 -236 21 71 0 0 chr11 109161602 109161644 -41621909 + AT_rich Low_complexity Low_complexity 1 42 0 255 344 43 18 chr11 109161728 109161891 -41621662 + LTR16C LTR ERVL 315 481 -10 1456 268 32 54 chr11 109161955 109162549 -41621004 - L1MC4 LINE L1 -7 8035 7455 666 274 22 40 chr11 109162549 109162775 -41620778 + L2 LINE L2 1006 1227 -2087 346 242 57 32 chr11 109162853 109162977 -41620576 + Charlie5 DNA MER1_type 1 127 -2485 * 1088 166 194 9 chr11 109162974 109163299 -41620254 + Charlie5 DNA MER1_type 2234 2618 0 1088 216 127 38 chr11 109163434 109163725 -41619828 - MLT1A1 LTR MaLR -11 354 38 792 298 47 58 chr11 109163731 109163830 -41619723 + L2 LINE L2 2588 2687 -626 234 0 0 0 chr11 109163830 109163856 -41619697 + (CA)n Simple_repeat Simple_repeat 2 27 0 792 298 47 58 chr11 109163856 109164439 -41619114 + L2 LINE L2 2687 3311 -2 318 250 48 0 chr11 109165071 109165155 -41618398 - L1ME3A LINE L1 -25 6145 6058 592 186 0 0 chr11 109165155 109165268 -41618285 - FLAM_C SINE Alu -30 113 1 2261 77 40 0 chr11 109165277 109165576 -41617977 - AluY SINE Alu 0 311 1 469 273 40 25 chr11 109165592 109165915 -41617638 - L1ME3A LINE L1 -118 6052 5691 378 42 0 0 chr11 109165915 109165963 -41617590 + (TG)n Simple_repeat Simple_repeat 2 49 0 469 273 40 25 chr11 109165963 109165989 -41617564 - L1ME3A LINE L1 -479 5691 5667 282 316 118 17 chr11 109166169 109166406 -41617147 + MIR SINE MIR 2 262 0 844 157 0 17 chr11 109168206 109168384 -41615169 + CT-rich Low_complexity Low_complexity 1 175 0 22 0 0 0 chr11 109168552 109168574 -41614979 + AT_rich Low_complexity Low_complexity 1 22 0 441 0 0 0 chr11 109168845 109168894 -41614659 + (TG)n Simple_repeat Simple_repeat 2 50 0 31 44 0 0 chr11 109169392 109169437 -41614116 + AT_rich Low_complexity Low_complexity 1 45 0 1779 128 0 0 chr11 109170173 109170424 -41613129 - AluSg SINE Alu -13 297 47 1846 120 97 26 chr11 109170844 109171194 -41612359 - THE1C LTR MaLR 0 375 1 2277 59 0 14 chr11 109171656 109171969 -41611584 + AluY SINE Alu 1 309 0 25 31 0 0 chr11 109172224 109172256 -41611297 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr11 109172374 109172397 -41611156 + AT_rich Low_complexity Low_complexity 1 23 0 522 199 91 43 chr11 109172831 109173017 -41610536 + L1MC5 LINE L1 6998 7192 -769 503 295 74 40 chr11 109173357 109173852 -41609701 + L1MEc LINE L1 807 1208 -4905 238 100 50 50 chr11 109173989 109174049 -41609504 + L1MEc LINE L1 2207 2266 -4130 897 239 50 39 chr11 109174080 109174340 -41609213 + L1ME LINE L1 5403 5665 -499 351 44 0 0 chr11 109174458 109174503 -41609050 + (CA)n Simple_repeat Simple_repeat 2 46 0 293 204 124 26 chr11 109174569 109174682 -41608871 - L1ME3A LINE L1 -666 5496 5373 261 249 58 92 chr11 109175053 109175226 -41608327 - MLT1-int LTR MaLR -172 1199 1033 22 35 0 0 chr11 109176446 109176475 -41607078 + AT_rich Low_complexity Low_complexity 1 29 0 217 296 37 12 chr11 109176744 109176825 -41606728 + MIR SINE MIR 95 177 -85 210 238 0 100 chr11 109177017 109177097 -41606456 + L2 LINE L2 3201 3272 0 190 287 59 35 chr11 109177097 109177198 -41606355 - MIR SINE MIR -103 105 3 258 106 0 0 chr11 109177233 109177280 -41606273 + (GA)n Simple_repeat Simple_repeat 2 48 0 210 162 0 0 chr11 109179013 109179050 -41604503 + (TTATG)n Simple_repeat Simple_repeat 3 39 0 32 26 0 0 chr11 109179097 109179136 -41604417 + AT_rich Low_complexity Low_complexity 1 39 0 939 252 60 91 chr11 109179661 109180077 -41603476 + MER77 LTR ERV1 92 494 -111 2008 18 0 0 chr11 109180164 109180389 -41603164 - AluYa5 SINE Alu -1 310 86 342 264 14 2 chr11 109180404 109180495 -41603058 + MER77 LTR ERV1 465 599 -6 363 328 37 5 chr11 109180892 109181081 -41602472 - HAL1 LINE L1 -761 1746 1552 191 338 14 0 chr11 109181214 109181285 -41602268 + L2 LINE L2 3232 3303 -10 585 182 29 53 chr11 109182533 109182703 -41600850 + L1MA8 LINE L1 6093 6258 -33 2970 151 64 48 chr11 109182703 109183331 -41600222 - Tigger3b DNA MER2_type 0 1231 594 3413 166 36 2 chr11 109184588 109185198 -41598355 - Tigger3b DNA MER2_type -600 631 1 7030 60 1 1 chr11 109185386 109186897 -41596656 - L1PA7 LINE L1 -1 6153 4642 22 0 0 0 chr11 109187797 109187819 -41595734 + AT_rich Low_complexity Low_complexity 1 22 0 856 309 60 29 chr11 109188000 109188716 -41594837 + L1MEc LINE L1 1086 1823 -4573 1712 189 17 5 chr11 109189000 109189334 -41594219 + MSTB2 LTR MaLR 23 299 -97 2232 206 9 42 chr11 109189335 109189914 -41593639 + L1PB1 LINE L1 4234 4793 -1353 3947 118 84 9 chr11 109189916 109190594 -41592959 + L1PB1 LINE L1 5423 6151 0 583 276 59 31 chr11 109190766 109191128 -41592425 + L1ME3A LINE L1 5800 6163 -7 1964 117 4 0 chr11 109191169 109191443 -41592110 - AluSx SINE Alu -17 295 21 264 59 0 0 chr11 109191604 109191638 -41591915 + (CA)n Simple_repeat Simple_repeat 1 34 0 212 398 65 11 chr11 109193195 109193381 -41590172 + MER91A DNA MER1_type 1 196 0 1529 213 108 7 chr11 109194669 109195004 -41588549 + L1MDa LINE L1 1983 2395 -4145 372 22 0 0 chr11 109195004 109195049 -41588504 + (TG)n Simple_repeat Simple_repeat 2 46 0 1529 213 108 7 chr11 109195049 109195257 -41588296 + L1MDa LINE L1 2395 2581 -3959 1254 262 57 26 chr11 109195323 109195906 -41587647 + L1MDa LINE L1 2666 3266 -3274 5985 98 9 15 chr11 109195914 109196797 -41586756 - L1PA8A LINE L1 0 6131 5254 7325 129 49 10 chr11 109196804 109197464 -41586089 + L1MA1 LINE L1 2188 2821 -4744 2025 123 0 20 chr11 109197464 109197764 -41585789 - AluSc SINE Alu -15 294 1 7325 129 49 10 chr11 109197764 109198461 -41585092 + L1MA1 LINE L1 2821 3598 -3967 6375 152 20 16 chr11 109198465 109200442 -41583111 + L1MA1 LINE L1 5731 7721 0 8311 228 37 39 chr11 109200469 109206230 -41577323 - L1MA4A LINE L1 -162 6843 949 194 339 134 6 chr11 109206231 109206402 -41577151 - L2 LINE L2 -480 2834 2642 24 67 0 0 chr11 109206497 109206542 -41577011 + AT_rich Low_complexity Low_complexity 1 45 0 2135 172 24 120 chr11 109207242 109207817 -41575736 - MLT2B1 LTR ERVL 0 520 1 347 253 71 0 chr11 109207874 109207973 -41575580 - MLT1L LTR MaLR -388 227 122 194 267 17 33 chr11 109208087 109208147 -41575406 - MIR SINE MIR -6 256 198 30473 73 2 1 chr11 109209056 109213082 -41570471 + L1P LINE L1 11 4039 -2107 322 243 29 0 chr11 109213264 109213334 -41570219 - L2 LINE L2 0 3313 3242 2532 61 0 3 chr11 109213375 109213687 -41569866 + AluY SINE Alu 1 311 0 811 61 0 0 chr11 109213698 109213797 -41569756 - L1PA7 LINE L1 -30 6124 6026 263 116 0 0 chr11 109213793 109213836 -41569717 + L1PA6 LINE L1 6108 6150 -4 * 329 321 61 8 chr11 109214010 109214141 -41569412 - L2 LINE L2 -230 3042 2905 1192 128 34 75 chr11 109217509 109217775 -41565778 + L1MA5A LINE L1 6043 6297 0 38 51 0 0 chr11 109218014 109218073 -41565480 + AT_rich Low_complexity Low_complexity 1 59 0 2043 113 55 0 chr11 109218188 109218481 -41565072 + AluSg1 SINE Alu 1 309 0 21 36 0 0 chr11 109219235 109219263 -41564290 + AT_rich Low_complexity Low_complexity 1 28 0 452 299 45 13 chr11 109219305 109219462 -41564091 + L1MC/D LINE L1 5477 5638 -2170 29276 38 3 2 chr11 109219919 109224273 -41559280 + L1PA5 LINE L1 1791 6154 0 247 277 11 23 chr11 109224889 109225000 -41558553 - L1ME LINE L1 -690 5474 5366 2195 133 16 21 chr11 109225097 109225472 -41558081 + THE1C LTR MaLR 1 373 -2 5866 95 44 76 chr11 109225507 109226584 -41556969 - L1PA8A LINE L1 0 6131 5073 32 57 0 0 chr11 109226949 109227002 -41556551 + AT_rich Low_complexity Low_complexity 1 53 0 208 302 0 0 chr11 109227708 109227771 -41555782 + A-rich Low_complexity Low_complexity 2 64 0 2189 98 0 13 chr11 109228494 109228809 -41554744 - AluY SINE Alu 0 311 1 1496 234 31 29 chr11 109228857 109229339 -41554214 + Charlie1b DNA MER1_type 35 517 -6 23 0 0 0 chr11 109230768 109230791 -41552762 + AT_rich Low_complexity Low_complexity 1 23 0 347 312 48 21 chr11 109231492 109231681 -41551872 + L2 LINE L2 1905 2098 -1216 550 201 177 0 chr11 109233340 109233504 -41550049 + L1MA9 LINE L1 5860 6052 -260 28 0 0 0 chr11 109233507 109233535 -41550018 + AT_rich Low_complexity Low_complexity 1 28 0 205 200 0 0 chr11 109233581 109233616 -41549937 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 244 117 0 0 chr11 109233623 109233668 -41549885 + L1MA9 LINE L1 6222 6274 -25 1901 186 50 21 chr11 109234096 109234376 -41549177 - Tigger2a DNA MER2_type -2277 431 134 1808 141 13 10 chr11 109234376 109234680 -41548873 + AluSq SINE Alu 1 305 -8 1901 186 50 21 chr11 109234680 109234818 -41548735 - Tigger2a DNA MER2_type -2574 134 1 4690 22 4 0 chr11 109234862 109235414 -41548139 + L1PA4 LINE L1 5602 6155 0 21 23 0 47 chr11 109235683 109235709 -41547844 + AT_rich Low_complexity Low_complexity 1 26 -15 475 179 21 0 chr11 109235709 109235804 -41547749 - L1PB4 LINE L1 -4 6152 6056 21 23 0 47 chr11 109235804 109235820 -41547733 + AT_rich Low_complexity Low_complexity 26 41 0 24 53 0 0 chr11 109242524 109242562 -41540991 + GC_rich Low_complexity Low_complexity 1 38 0 208 195 78 39 chr11 109243543 109243620 -41539933 + L3 LINE CR1 637 716 -861 22 0 0 0 chr11 109246745 109246767 -41536786 + AT_rich Low_complexity Low_complexity 1 22 0 22 80 0 0 chr11 109247782 109247832 -41535721 + AT_rich Low_complexity Low_complexity 1 50 0 252 333 61 20 chr11 109248402 109248501 -41535052 - MIR SINE MIR -88 120 18 216 281 0 0 chr11 109250570 109250634 -41532919 + (TAA)n Simple_repeat Simple_repeat 2 65 0 221 318 61 0 chr11 109250683 109250749 -41532804 + MIR SINE MIR 49 118 -144 245 299 56 28 chr11 109251797 109251904 -41531649 + MIR SINE MIR 83 192 -70 25 31 0 0 chr11 109251993 109252025 -41531528 + AT_rich Low_complexity Low_complexity 1 32 0 2348 48 0 54 chr11 109252467 109252783 -41530770 - AluY SINE Alu -12 299 1 30035 26 0 0 chr11 109253452 109257817 -41525736 - L1PA3 LINE L1 0 6155 1791 452 299 45 13 chr11 109258274 109258431 -41525122 - L1MC/D LINE L1 -2170 5638 5477 21 36 0 0 chr11 109258473 109258501 -41525052 + AT_rich Low_complexity Low_complexity 1 28 0 2043 113 55 0 chr11 109259255 109259548 -41524005 - AluSg1 SINE Alu 0 309 1 38 51 0 0 chr11 109259663 109259722 -41523831 + AT_rich Low_complexity Low_complexity 1 59 0 1192 128 34 75 chr11 109259961 109260227 -41523326 - L1MA5A LINE L1 0 6297 6043 1338 338 98 13 chr11 109261158 109261759 -41521794 - MER115 DNA AcHobo 0 693 42 694 264 119 4 chr11 109261857 109262084 -41521469 + MIR SINE MIR 16 262 0 1844 151 0 3 chr11 109263054 109263346 -41520207 + AluSx SINE Alu 3 293 -19 25 31 0 0 chr11 109263997 109264029 -41519524 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr11 109264437 109264466 -41519087 + AT_rich Low_complexity Low_complexity 1 29 0 319 304 183 0 chr11 109266075 109266190 -41517363 + MIR SINE MIR 3 138 -124 315 207 0 74 chr11 109266583 109266679 -41516874 + MER2 DNA MER2_type 1 89 -150 249 268 0 0 chr11 109266698 109266754 -41516799 + MER2 DNA MER2_type 290 345 0 22 0 0 0 chr11 109266838 109266860 -41516693 + AT_rich Low_complexity Low_complexity 1 22 0 230 253 11 33 chr11 109269124 109269215 -41514338 + (TATG)n Simple_repeat Simple_repeat 3 91 0 1270 212 111 9 chr11 109269290 109269606 -41513947 + MER7A DNA MER2_type 1 346 0 292 180 124 11 chr11 109271879 109271968 -41511585 - MER110A LTR ERV1 -291 177 79 622 251 159 0 chr11 109271980 109272143 -41511410 - MER5A DNA MER1_type 0 189 1 22 35 0 0 chr11 109273123 109273152 -41510401 + AT_rich Low_complexity Low_complexity 1 29 0 563 309 93 50 chr11 109274614 109274781 -41508772 - L2 LINE L2 -8 3305 3147 294 29 0 0 chr11 109274781 109274816 -41508737 + (TG)n Simple_repeat Simple_repeat 1 35 0 563 309 93 50 chr11 109274816 109275186 -41508367 - L2 LINE L2 -166 3147 2725 516 300 6 28 chr11 109275214 109275394 -41508159 - L2 LINE L2 -936 2378 2203 183 80 0 0 chr11 109275444 109275469 -41508084 + (TA)n Simple_repeat Simple_repeat 1 25 0 228 136 68 0 chr11 109275910 109275998 -41507555 + (TA)n Simple_repeat Simple_repeat 1 94 0 356 116 0 29 chr11 109276025 109276094 -41507459 + (TCCC)n Simple_repeat Simple_repeat 2 68 0 1621 199 0 3 chr11 109278704 109279000 -41504553 + AluJo SINE Alu 1 295 -17 569 209 29 14 chr11 109279640 109279779 -41503774 + MER97c DNA MER1_type? 32 172 -918 405 0 0 0 chr11 109280502 109280547 -41503006 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 21 0 0 0 chr11 109281835 109281856 -41501697 + AT_rich Low_complexity Low_complexity 1 21 0 33 85 0 0 chr11 109281911 109281993 -41501560 + AT_rich Low_complexity Low_complexity 1 82 0 1930 138 3 3 chr11 109283108 109283399 -41500154 - AluSx SINE Alu -20 292 2 848 291 39 66 chr11 109283677 109284134 -41499419 + LTR16B LTR ERVL 20 464 0 188 271 35 94 chr11 109284693 109284778 -41498775 + MIR3 SINE MIR 121 200 -8 1879 137 34 62 chr11 109284811 109285197 -41498356 + THE1C LTR MaLR 1 375 0 387 350 58 7 chr11 109286537 109286674 -41496879 + L2 LINE L2 3117 3260 -12 358 281 26 48 chr11 109287403 109287634 -41495919 - HAL1b LINE L1 -29 1319 1094 210 279 0 16 chr11 109287904 109287965 -41495588 + MER5B DNA MER1_type 4 63 -115 218 328 111 32 chr11 109288072 109288261 -41495292 - MIR SINE MIR -27 235 32 23 0 0 0 chr11 109288651 109288674 -41494879 + AT_rich Low_complexity Low_complexity 1 23 0 363 150 94 71 chr11 109289073 109289200 -41494353 + L1ME2 LINE L1 5917 6046 -118 1784 236 51 39 chr11 109289724 109290292 -41493261 - L1ME3 LINE L1 -6 6156 5582 6605 66 7 0 chr11 109290378 109291415 -41492138 - L1PA8 LINE L1 0 6172 5113 518 108 0 0 chr11 109291416 109291490 -41492063 + L1PA8 LINE L1 5019 5092 -1054 777 138 51 14 chr11 109291496 109291634 -41491919 - FLAM_C SINE Alu 0 143 1 189 195 0 24 chr11 109291753 109291794 -41491759 - L2 LINE L2 -4 3309 3270 28 0 0 0 chr11 109292198 109292226 -41491327 + AT_rich Low_complexity Low_complexity 1 28 0 1619 159 29 7 chr11 109293049 109293360 -41490193 + AluSx SINE Alu 1 317 0 198 118 0 0 chr11 109293442 109293476 -41490077 + (CA)n Simple_repeat Simple_repeat 1 34 0 1677 184 39 8 chr11 109294598 109294962 -41488591 + THE1C LTR MaLR 1 375 0 4626 122 14 21 chr11 109295319 109296091 -41487462 + L1MA3 LINE L1 5536 6302 -3 457 353 71 53 chr11 109296618 109297054 -41486499 + L2 LINE L2 2811 3254 -18 242 189 0 38 chr11 109297718 109297771 -41485782 - MLT1L LTR MaLR -564 51 1 575 263 103 12 chr11 109298878 109299121 -41484432 - MER20B DNA MER1_type -18 765 501 1972 101 3 10 chr11 109299186 109299483 -41484070 - AluSc SINE Alu -14 295 1 276 194 56 14 chr11 109299910 109299982 -41483571 + L1ME4a LINE L1 5977 6051 -70 216 0 0 0 chr11 109300034 109300058 -41483495 + (CA)n Simple_repeat Simple_repeat 2 25 0 255 337 41 0 chr11 109301371 109301469 -41482084 + L2 LINE L2 3208 3309 -4 2022 112 0 10 chr11 109302050 109302346 -41481207 - AluSg SINE Alu -17 293 1 29 28 0 0 chr11 109302699 109302735 -41480818 + AT_rich Low_complexity Low_complexity 1 36 0 631 227 0 30 chr11 109302754 109302886 -41480667 + Tigger3(Golem) DNA MER2_type 15 142 -2887 * 725 138 16 8 chr11 109302883 109303006 -41480547 + Tigger3(Golem) DNA MER2_type 2771 2894 -135 * 1521 189 88 3 chr11 109302997 109303303 -41480250 - MER6A DNA MER2_type -347 258 187 1470 151 85 4 chr11 109303303 109303574 -41479979 - MSTB LTR MaLR 0 426 134 456 219 0 0 chr11 109303581 109303663 -41479890 - MER6A DNA MER2_type -523 82 1 592 349 21 17 chr11 109303849 109304090 -41479463 - MIR SINE MIR -14 248 7 261 274 59 59 chr11 109304223 109304325 -41479228 - MIR SINE MIR -140 122 21 744 262 18 0 chr11 109304868 109305032 -41478521 + MER45A DNA AcHobo 1 167 -11 21 36 0 0 chr11 109306229 109306257 -41477296 + AT_rich Low_complexity Low_complexity 1 28 0 571 292 14 59 chr11 109306367 109306586 -41476967 - MIR SINE MIR -49 213 5 2582 36 0 0 chr11 109307742 109308045 -41475508 + AluY SINE Alu 1 303 -8 573 256 107 116 chr11 109308409 109308850 -41474703 - LTR33A LTR ERVL -86 437 1 236 371 51 0 chr11 109308872 109309050 -41474503 + MIR SINE MIR 76 262 0 391 316 96 21 chr11 109309463 109309745 -41473808 + L1ME4a LINE L1 5596 5898 -223 21 71 0 0 chr11 109309999 109310041 -41473512 + AT_rich Low_complexity Low_complexity 1 42 0 212 171 0 0 chr11 109310435 109310476 -41473077 + T-rich Low_complexity Low_complexity 1 41 0 195 195 24 0 chr11 109310827 109310868 -41472685 - MIR SINE MIR -130 132 91 1000 76 0 0 chr11 109311986 109312118 -41471435 - L1PA7 LINE L1 -3 6151 6020 21 0 0 0 chr11 109313654 109313675 -41469878 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 109315627 109315649 -41467904 + AT_rich Low_complexity Low_complexity 1 22 0 279 0 0 0 chr11 109316577 109316608 -41466945 + (CA)n Simple_repeat Simple_repeat 2 32 0 507 288 29 44 chr11 109316668 109316873 -41466680 + MIR SINE MIR 60 261 -1 213 121 0 0 chr11 109317246 109317279 -41466274 + (TC)n Simple_repeat Simple_repeat 2 34 0 22 35 0 0 chr11 109317746 109317775 -41465778 + AT_rich Low_complexity Low_complexity 1 29 0 2044 137 38 41 chr11 109317976 109318341 -41465212 - THE1B LTR MaLR 0 364 1 10709 119 12 1 chr11 109318341 109319904 -41463649 - THE1B-int LTR MaLR 0 1580 1 1969 155 16 43 chr11 109319904 109320278 -41463275 - THE1B LTR MaLR 0 364 1 869 278 53 53 chr11 109320613 109321080 -41462473 + MLT1C LTR MaLR 1 467 0 636 201 101 0 chr11 109321278 109321417 -41462136 - MER20 DNA MER1_type -2 217 65 1148 133 66 119 chr11 109321431 109321733 -41461820 + L1MA7 LINE L1 5997 6282 -9 780 226 15 20 chr11 109321772 109321971 -41461582 + MER96B DNA MER1_type? 2 199 -218 256 316 186 0 chr11 109322119 109322296 -41461257 + MIR SINE MIR 37 246 -16 2359 90 0 6 chr11 109324673 109324984 -41458569 + AluSc SINE Alu 1 309 0 225 221 0 44 chr11 109326047 109326115 -41457438 - L1MC4 LINE L1 -1338 6704 6640 275 289 14 14 chr11 109326115 109326257 -41457296 + (TA)n Simple_repeat Simple_repeat 2 143 0 241 323 32 24 chr11 109326394 109326518 -41457035 - MIR SINE MIR -60 202 78 215 384 65 55 chr11 109326976 109327361 -41456192 - L2 LINE L2 -52 3220 2832 423 192 39 135 chr11 109327847 109328003 -41455550 + MLT1I LTR MaLR 262 402 -7 626 266 44 0 chr11 109328102 109328260 -41455293 - MER45A DNA AcHobo 0 178 14 240 100 0 0 chr11 109328307 109328347 -41455206 + (TG)n Simple_repeat Simple_repeat 2 41 0 29 0 0 0 chr11 109328672 109328701 -41454852 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr11 109329476 109329504 -41454049 + AT_rich Low_complexity Low_complexity 1 28 0 546 386 28 15 chr11 109330357 109330681 -41452872 - LTR16C LTR ERVL -10 481 154 431 229 16 0 chr11 109331459 109331581 -41451972 + CT-rich Low_complexity Low_complexity 4 127 0 1706 231 6 6 chr11 109331909 109332272 -41451281 + MLT1A1 LTR MaLR 1 363 -2 226 315 87 60 chr11 109332276 109332460 -41451093 + MIR SINE MIR 47 235 -27 2243 108 0 3 chr11 109332548 109332862 -41450691 + AluSq SINE Alu 1 313 0 214 398 11 11 chr11 109333600 109333688 -41449865 - L2 LINE L2 -62 3210 3123 548 303 178 41 chr11 109333786 109334229 -41449324 - L2 LINE L2 -867 2447 1944 1952 273 48 33 chr11 109334302 109334651 -41448902 - L1ME3A LINE L1 -31 6139 5797 1523 166 48 69 chr11 109334651 109335030 -41448523 + MLT1A2 LTR MaLR 4 374 0 1952 273 48 33 chr11 109335030 109335446 -41448107 - L1ME3A LINE L1 -373 5797 5362 22 70 0 0 chr11 109335647 109335690 -41447863 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr11 109335991 109336028 -41447525 + AT_rich Low_complexity Low_complexity 1 37 0 5289 127 22 6 chr11 109336211 109337262 -41446291 - L1PA13 LINE L1 -2 6161 5086 428 148 80 0 chr11 109337297 109337385 -41446168 + 7SK RNA RNA 29 123 -70 398 186 0 0 chr11 109337423 109337493 -41446060 + 7SK RNA RNA 121 190 -3 24 32 0 0 chr11 109337990 109338021 -41445532 + AT_rich Low_complexity Low_complexity 1 31 0 2076 136 7 0 chr11 109338195 109338504 -41445049 - AluSx SINE Alu -1 311 1 27 49 0 0 chr11 109338993 109339034 -41444519 + AT_rich Low_complexity Low_complexity 1 41 0 1162 76 0 6 chr11 109339063 109339220 -41444333 - L1PA5 LINE L1 -8 6146 5991 5386 172 26 43 chr11 109339617 109341624 -41441929 - L1PA15 LINE L1 -6 6159 4201 5268 212 19 8 chr11 109341619 109342809 -41440744 + L1PA15 LINE L1 2997 4199 -1947 * 24173 181 13 20 chr11 109345231 109348125 -41435428 + L1PA10 LINE L1 453 3307 -3176 2030 95 48 14 chr11 109348125 109348419 -41435134 + AluY SINE Alu 1 304 -7 24173 181 13 20 chr11 109348419 109350877 -41432676 + L1PA10 LINE L1 3307 5780 -703 3363 107 20 2 chr11 109350979 109351485 -41432068 + L1PA10 LINE L1 5966 6480 -3 345 328 94 56 chr11 109351499 109351947 -41431606 + L1ME4a LINE L1 5438 5902 -219 213 214 0 36 chr11 109352274 109352330 -41431223 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 395 298 163 11 chr11 109352437 109352656 -41430897 - L2 LINE L2 -313 3000 2749 22 0 0 0 chr11 109352844 109352866 -41430687 + AT_rich Low_complexity Low_complexity 1 22 0 295 324 84 0 chr11 109352898 109353040 -41430513 + L2 LINE L2 3160 3313 0 608 157 0 112 chr11 109356022 109356156 -41427397 + FLAM_C SINE Alu 1 119 -24 778 191 41 0 chr11 109357236 109357383 -41426170 - L1PA15 LINE L1 -20 6145 5993 * 5481 240 37 21 chr11 109357382 109357473 -41426080 - L1PA13 LINE L1 -1888 4909 4821 221 0 0 33 chr11 109357473 109357503 -41426050 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 5481 240 37 21 chr11 109357503 109359293 -41424260 - L1PA13 LINE L1 -1976 4821 1317 2403 283 45 35 chr11 109359323 109360131 -41423422 - L1PA13 LINE L1 -5971 816 1 199 211 22 0 chr11 109360284 109360374 -41423179 + (TA)n Simple_repeat Simple_repeat 2 93 0 28 71 0 0 chr11 109360374 109360430 -41423123 + AT_rich Low_complexity Low_complexity 1 56 0 207 217 0 33 chr11 109360539 109360599 -41422954 + CT-rich Low_complexity Low_complexity 3 60 0 2645 209 45 20 chr11 109361497 109362084 -41421469 - L1M2 LINE L1 -4647 2202 1594 2011 153 0 0 chr11 109362084 109362385 -41421168 - AluSx SINE Alu -11 301 1 2645 209 45 20 chr11 109362385 109362492 -41421061 - L1M2 LINE L1 -5255 1594 1491 381 284 25 41 chr11 109362778 109362947 -41420606 + MIR SINE MIR 57 221 -41 1669 191 3 0 chr11 109363741 109364023 -41419530 - AluJb SINE Alu -16 296 14 26 0 0 0 chr11 109364094 109364120 -41419433 + AT_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chr11 109365080 109365112 -41418441 + AT_rich Low_complexity Low_complexity 1 32 0 795 197 139 63 chr11 109365341 109365762 -41417791 - MER57A LTR ERV1 0 403 1 27 29 0 0 chr11 109365884 109365918 -41417635 + AT_rich Low_complexity Low_complexity 1 34 0 311 336 72 8 chr11 109366926 109367051 -41416502 + L2 LINE L2 3180 3312 -1 21 0 0 0 chr11 109367231 109367252 -41416301 + AT_rich Low_complexity Low_complexity 1 21 0 2823 42 89 5 chr11 109368686 109369069 -41414484 + L1PA7 LINE L1 5732 6146 -8 285 224 127 15 chr11 109369328 109369462 -41414091 - Tigger6b DNA MER2_type -1055 542 394 4631 255 38 28 chr11 109369466 109372318 -41411235 - L1PA13 LINE L1 -3775 3022 70 1836 225 45 21 chr11 109372337 109372764 -41410789 - Tigger6b DNA MER2_type -1160 437 1 309 315 65 65 chr11 109373212 109373612 -41409941 + L1ME LINE L1 5256 5650 -471 322 339 64 26 chr11 109375215 109375464 -41408089 + L2 LINE L2 2267 3001 -312 22 35 0 0 chr11 109376467 109376496 -41407057 + AT_rich Low_complexity Low_complexity 1 29 0 2348 82 0 0 chr11 109376587 109376893 -41406660 + AluY SINE Alu 2 307 -4 327 358 30 8 chr11 109377195 109377329 -41406224 - L2 LINE L2 -16 3297 3161 210 282 173 18 chr11 109377940 109378050 -41405503 - L2 LINE L2 -10 3262 3136 233 311 114 36 chr11 109378533 109378700 -41404853 + MLT1J LTR MaLR 1 180 -331 481 305 16 26 chr11 109378799 109378989 -41404564 + MLT1J LTR MaLR 324 511 0 242 299 128 64 chr11 109380510 109380714 -41402839 - MLT1L LTR MaLR 0 615 399 1959 116 17 3 chr11 109381089 109381383 -41402170 + AluY SINE Alu 3 300 -11 180 158 0 0 chr11 109381712 109381750 -41401803 + T-rich Low_complexity Low_complexity 1 38 0 331 307 41 78 chr11 109382301 109382519 -41401034 + MLT1L LTR MaLR 201 410 -205 209 365 0 0 chr11 109382722 109382796 -41400757 - MIR SINE MIR -119 143 70 22 0 0 0 chr11 109383369 109383391 -41400162 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr11 109383519 109383551 -41400002 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr11 109384246 109384269 -41399284 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr11 109384606 109384636 -41398917 + AT_rich Low_complexity Low_complexity 1 30 0 1587 181 0 26 chr11 109385058 109385361 -41398192 - AluJb SINE Alu -17 295 1 1831 108 3 61 chr11 109385399 109385719 -41397834 + AluSg SINE Alu 1 303 0 189 0 0 0 chr11 109386488 109386509 -41397044 + (TG)n Simple_repeat Simple_repeat 2 22 0 23 86 0 0 chr11 109387289 109387347 -41396206 + AT_rich Low_complexity Low_complexity 1 58 0 491 210 166 38 chr11 109387377 109387534 -41396019 - MIR SINE MIR -11 251 75 453 304 30 15 chr11 109387602 109387737 -41395816 + MIR3 SINE MIR 50 186 -22 180 222 32 48 chr11 109388169 109388232 -41395321 + L3 LINE CR1 972 1033 -544 242 380 40 13 chr11 109389313 109389463 -41394090 + MIR3 SINE MIR 17 170 -38 21 0 0 0 chr11 109389859 109389880 -41393673 + AT_rich Low_complexity Low_complexity 1 21 0 1889 134 87 29 chr11 109390099 109390443 -41393110 - THE1B LTR MaLR 0 364 1 360 296 58 12 chr11 109390530 109390702 -41392851 - MLT1J LTR MaLR -183 328 149 375 331 80 7 chr11 109390958 109391109 -41392444 - L2 LINE L2 -582 2732 2571 1848 140 4 4 chr11 109391233 109391512 -41392041 - AluSx SINE Alu -32 280 2 186 71 0 0 chr11 109391538 109391566 -41391987 + (TCTCTG)n Simple_repeat Simple_repeat 2 29 0 35 54 0 0 chr11 109391972 109392028 -41391525 + AT_rich Low_complexity Low_complexity 1 56 0 1616 203 3 13 chr11 109392167 109392482 -41391071 + AluJo SINE Alu 1 312 0 2174 281 100 59 chr11 109393267 109394615 -41388938 + L2 LINE L2 1880 3313 0 243 0 0 0 chr11 109395372 109395399 -41388154 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1466 213 46 0 chr11 109395414 109395530 -41388023 + AluJo SINE Alu 1 110 -202 486 0 0 0 chr11 109395530 109395584 -41387969 + (CA)n Simple_repeat Simple_repeat 1 54 0 1466 213 46 0 chr11 109395584 109395749 -41387804 + AluJo SINE Alu 110 295 -17 268 277 125 9 chr11 109395914 109396026 -41387527 + MIR3 SINE MIR 82 206 -2 2048 149 0 0 chr11 109396375 109396684 -41386869 + AluSx SINE Alu 1 309 -3 4003 101 2 35 chr11 109397270 109397901 -41385652 - LTR66 LTR ERVL 0 610 1 3767 95 4 3 chr11 109397902 109398577 -41384976 - HERVL66 LTR ERVL -1 4328 3569 4713 124 10 10 chr11 109398578 109399274 -41384279 - HERVL66 LTR ERVL -980 3349 2654 954 97 35 7 chr11 109399254 109399398 -41384155 - HERVL66 LTR ERVL -2532 1797 1650 * 22 35 0 0 chr11 109400072 109400101 -41383452 + AT_rich Low_complexity Low_complexity 1 29 0 227 237 51 17 chr11 109400205 109400264 -41383289 + L2 LINE L2 3210 3270 -2 658 361 109 32 chr11 109400592 109401372 -41382181 + L2 LINE L2 1866 2705 -609 258 387 51 16 chr11 109401463 109401719 -41381834 + L2 LINE L2 2839 3103 -169 216 143 0 0 chr11 109402511 109402546 -41381007 - L2 LINE L2 0 3313 3279 21 0 0 0 chr11 109403324 109403345 -41380208 + AT_rich Low_complexity Low_complexity 1 21 0 22 106 0 0 chr11 109404594 109404679 -41378874 + AT_rich Low_complexity Low_complexity 1 85 0 24 53 0 0 chr11 109405020 109405058 -41378495 + AT_rich Low_complexity Low_complexity 1 38 0 1336 253 67 42 chr11 109405138 109405704 -41377849 - L1MC4a LINE L1 -1799 6009 5430 28 29 0 0 chr11 109405819 109405854 -41377699 + AT_rich Low_complexity Low_complexity 1 35 0 8004 174 64 49 chr11 109405949 109406409 -41377144 - L1MA8 LINE L1 -7 6284 5833 236 169 0 70 chr11 109406409 109406480 -41377073 + LTR66 LTR ERVL 378 443 -167 8004 174 64 49 chr11 109406480 109408629 -41374924 - L1MA8 LINE L1 -458 5833 3571 2449 205 37 92 chr11 109408649 109409551 -41374002 + L1 LINE L1 2596 3447 -2699 276 301 85 37 chr11 109410425 109410671 -41372882 + L1MEd LINE L1 52 309 -5810 544 298 78 56 chr11 109411081 109411490 -41372063 + L1MEd LINE L1 730 1147 -4972 1981 135 3 0 chr11 109411824 109412120 -41371433 - AluSx SINE Alu -15 297 1 22 0 0 0 chr11 109412355 109412377 -41371176 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr11 109413042 109413085 -41370468 + AT_rich Low_complexity Low_complexity 1 43 0 677 316 13 0 chr11 109413123 109413348 -41370205 + HsTC2 DNA Tc2 1455 1682 -216 28 29 0 0 chr11 109414438 109414473 -41369080 + AT_rich Low_complexity Low_complexity 1 35 0 184 304 22 43 chr11 109414865 109414957 -41368596 + L2 LINE L2 2876 2965 -307 649 276 68 71 chr11 109416750 109417073 -41366480 - MLT1H LTR MaLR -204 345 24 282 29 0 0 chr11 109417178 109417213 -41366340 + (CAT)n Simple_repeat Simple_repeat 1 35 0 515 342 51 12 chr11 109417906 109418163 -41365390 + LTR16C LTR ERVL 188 454 -37 219 36 0 0 chr11 109418213 109418241 -41365312 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 2143 100 13 3 chr11 109418241 109418540 -41365013 - AluSg SINE Alu -8 302 1 862 99 7 14 chr11 109418540 109418681 -41364872 + (TTCC)n Simple_repeat Simple_repeat 3 142 0 1445 231 42 60 chr11 109418714 109419194 -41364359 + MLT1D LTR MaLR 35 505 0 205 186 0 0 chr11 109419963 109420006 -41363547 + (TA)n Simple_repeat Simple_repeat 1 43 0 403 221 16 8 chr11 109420166 109420293 -41363260 + GA-rich Low_complexity Low_complexity 4 131 0 194 305 51 25 chr11 109420313 109420431 -41363122 - MIR SINE MIR -32 230 110 1857 113 7 34 chr11 109420824 109421115 -41362438 - AluSx SINE Alu -29 283 1 1572 152 10 35 chr11 109422742 109423052 -41360501 + L1MA9 LINE L1 6011 6312 0 300 235 10 39 chr11 109423059 109423161 -41360392 - HAL1 LINE L1 -821 1686 1588 27 100 0 0 chr11 109426210 109426300 -41357253 + AT_rich Low_complexity Low_complexity 1 90 0 2493 148 24 9 chr11 109426441 109426861 -41356692 - MSTB LTR MaLR 0 426 1 22 0 0 0 chr11 109427858 109427880 -41355673 + AT_rich Low_complexity Low_complexity 1 22 0 518 179 6 77 chr11 109427886 109428042 -41355511 - HAL1 LINE L1 -335 2172 2028 319 246 0 98 chr11 109428052 109428174 -41355379 + L2 LINE L2 3199 3308 -5 567 297 108 48 chr11 109428203 109428685 -41354868 - HAL1 LINE L1 -538 1969 1459 451 328 65 57 chr11 109428751 109429601 -41353952 - HAL1 LINE L1 -1244 1263 407 26 30 0 0 chr11 109429872 109429905 -41353648 + AT_rich Low_complexity Low_complexity 1 33 0 2194 101 0 0 chr11 109430129 109430416 -41353137 + AluY SINE Alu 3 289 -22 629 122 45 0 chr11 109430417 109430573 -41352980 + (TA)n Simple_repeat Simple_repeat 1 163 0 288 278 0 0 chr11 109430577 109430667 -41352886 - L1MC4 LINE L1 -1339 6703 6614 259 209 0 95 chr11 109430627 109430732 -41352821 + L1MC4 LINE L1 6614 6708 -1334 * 287 367 133 11 chr11 109431165 109431519 -41352034 - L2 LINE L2 -4 3268 2872 269 68 23 0 chr11 109431589 109431633 -41351920 + (TA)n Simple_repeat Simple_repeat 1 45 0 265 367 76 0 chr11 109432038 109432196 -41351357 - L3 LINE CR1 -42 1535 1366 222 380 120 37 chr11 109432333 109432549 -41351004 - L3 LINE CR1 -310 1267 1034 * 652 334 102 12 chr11 109432521 109432853 -41350700 - L2 LINE L2 -659 2655 2294 276 330 30 10 chr11 109432885 109432985 -41350568 + L2 LINE L2 1209 1310 -2004 3273 161 55 8 chr11 109433121 109433760 -41349793 - L1MA4 LINE L1 -19 6281 5613 1693 181 25 44 chr11 109433832 109434120 -41349433 + L1M1 LINE L1 4972 5264 -1041 2060 102 11 3 chr11 109434120 109434404 -41349149 + AluSc SINE Alu 1 286 -23 1693 181 25 44 chr11 109434404 109434739 -41348814 + L1M1 LINE L1 5264 5584 -721 1531 318 126 20 chr11 109434827 109435691 -41347862 + L2 LINE L2 1331 2286 -1028 379 250 0 10 chr11 109435691 109435787 -41347766 + MER94 DNA DNA 6 100 -34 918 319 121 2 chr11 109435861 109436316 -41347237 + MLT1J LTR MaLR 1 509 -2 932 293 69 73 chr11 109436332 109437061 -41346492 - L2 LINE L2 0 3313 2595 219 387 24 16 chr11 109437077 109437201 -41346352 + L2 LINE L2 2337 2461 -853 188 243 0 0 chr11 109438258 109438295 -41345258 - L2 LINE L2 -540 2774 2738 24 0 0 0 chr11 109438431 109438455 -41345098 + AT_rich Low_complexity Low_complexity 1 24 0 194 105 26 0 chr11 109439525 109439563 -41343990 + GA-rich Low_complexity Low_complexity 3 41 0 22 0 0 0 chr11 109439914 109439936 -41343617 + AT_rich Low_complexity Low_complexity 1 22 0 269 135 19 0 chr11 109440375 109440427 -41343126 + (CCTAT)n Simple_repeat Simple_repeat 4 56 0 756 336 80 10 chr11 109440772 109441159 -41342394 - L3 LINE CR1 -2 1575 1162 777 127 16 0 chr11 109441875 109442001 -41341552 - AluSg/x SINE Alu -10 302 175 238 317 0 0 chr11 109442007 109442067 -41341486 + LTR16A LTR ERVL 160 219 -231 410 362 132 10 chr11 109442068 109442469 -41341084 - L2 LINE L2 -844 2470 2021 236 213 27 27 chr11 109442568 109442643 -41340910 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 199 310 71 76 chr11 109444074 109444258 -41339295 + MIR SINE MIR 74 256 -6 2102 122 0 3 chr11 109444296 109444600 -41338953 + AluSg SINE Alu 1 303 -7 369 308 132 47 chr11 109445049 109445413 -41338140 - L1ME4a LINE L1 -142 5979 5585 1782 138 36 18 chr11 109445513 109445846 -41337707 + L1MA4A LINE L1 5960 6298 -5 24 32 0 0 chr11 109445882 109445913 -41337640 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr11 109447390 109447416 -41336137 + AT_rich Low_complexity Low_complexity 1 26 0 7174 155 1 2 chr11 109447881 109449888 -41333665 - L1PA10 LINE L1 -11 6157 4136 2130 89 4 0 chr11 109450884 109451190 -41332363 + AluY SINE Alu 1 307 0 299 111 0 0 chr11 109451219 109451264 -41332289 + L1MA4A LINE L1 6132 6176 -127 373 116 15 66 chr11 109451397 109451505 -41332048 + L1MA4A LINE L1 5931 6041 -263 248 308 26 13 chr11 109451588 109451666 -41331887 + L2 LINE L2 3184 3262 -10 53 49 0 0 chr11 109451919 109452000 -41331553 + AT_rich Low_complexity Low_complexity 1 81 0 22 0 0 0 chr11 109453186 109453208 -41330345 + AT_rich Low_complexity Low_complexity 1 22 0 357 43 0 0 chr11 109453670 109453717 -41329836 + (CA)n Simple_repeat Simple_repeat 2 48 0 348 343 36 7 chr11 109453743 109453883 -41329670 + MIR SINE MIR 50 193 -69 1969 132 3 3 chr11 109454619 109454914 -41328639 + AluSc SINE Alu 1 295 -14 182 219 0 0 chr11 109454917 109454949 -41328604 - L2 LINE L2 -19 3294 3263 23 0 0 0 chr11 109456362 109456385 -41327168 + AT_rich Low_complexity Low_complexity 1 23 0 2580 20 0 7 chr11 109456872 109457175 -41326378 + AluY SINE Alu 1 301 -10 204 277 0 0 chr11 109457757 109457804 -41325749 + CT-rich Low_complexity Low_complexity 3 49 0 198 0 0 0 chr11 109458537 109458559 -41324994 + (T)n Simple_repeat Simple_repeat 1 22 0 255 263 13 13 chr11 109458963 109459039 -41324514 - MER103 DNA DNA -50 116 41 210 71 0 0 chr11 109459140 109459168 -41324385 + (CA)n Simple_repeat Simple_repeat 1 28 0 248 130 0 22 chr11 109459647 109459693 -41323860 + L2 LINE L2 3171 3215 -98 4927 198 34 6 chr11 109459697 109461586 -41321967 - L1PA16 LINE L1 0 6166 4242 261 375 48 12 chr11 109461841 109462009 -41321544 + MER5A DNA MER1_type 10 183 -6 2052 115 3 14 chr11 109462545 109462840 -41320713 - AluSq SINE Alu -21 292 1 1029 203 28 46 chr11 109462964 109463181 -41320372 - MER20 DNA MER1_type -6 213 1 225 0 0 0 chr11 109464673 109464698 -41318855 + (TTA)n Simple_repeat Simple_repeat 3 27 0 9261 35 0 3 chr11 109464698 109466584 -41316969 - L1PA4 LINE L1 -18 6137 4255 252 310 70 16 chr11 109466784 109466913 -41316640 - MIR SINE MIR -15 247 112 212 77 26 0 chr11 109469546 109469585 -41313968 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 380 347 31 22 chr11 109469764 109469989 -41313564 - L1ME LINE L1 -609 5555 5329 365 275 139 75 chr11 109470198 109470251 -41313302 - L1ME LINE L1 -1300 4846 4798 1954 144 36 33 chr11 109470251 109470612 -41312941 + THE1B LTR MaLR 1 362 -2 365 275 139 75 chr11 109470612 109470889 -41312664 - L1ME LINE L1 -1348 4798 4495 227 353 63 0 chr11 109470890 109471097 -41312456 - L1ME LINE L1 -1703 4443 4224 249 83 0 0 chr11 109471110 109471146 -41312407 + (TA)n Simple_repeat Simple_repeat 2 37 0 31 0 0 0 chr11 109472702 109472733 -41310820 + AT_rich Low_complexity Low_complexity 1 31 0 32 26 0 0 chr11 109472954 109472993 -41310560 + AT_rich Low_complexity Low_complexity 1 39 0 459 141 0 0 chr11 109472993 109473071 -41310482 + (CA)n Simple_repeat Simple_repeat 2 79 0 187 328 33 0 chr11 109474223 109474284 -41309269 - MIR SINE MIR -153 109 47 22 35 0 0 chr11 109474788 109474817 -41308736 + AT_rich Low_complexity Low_complexity 1 29 0 1798 107 26 0 chr11 109475367 109475637 -41307916 - L1PA13 LINE L1 -1 6162 5886 22 0 0 0 chr11 109476066 109476088 -41307465 + AT_rich Low_complexity Low_complexity 1 22 0 396 316 134 29 chr11 109476934 109477360 -41306193 - L1MC/D LINE L1 -748 5398 5127 22 56 0 0 chr11 109477473 109477509 -41306044 + AT_rich Low_complexity Low_complexity 1 36 0 217 278 206 22 chr11 109477891 109478077 -41305476 + MIR SINE MIR 6 216 -46 304 365 88 5 chr11 109479350 109479542 -41304011 + MIR SINE MIR 18 225 -37 231 195 0 0 chr11 109479811 109479852 -41303701 + CT-rich Low_complexity Low_complexity 3 43 0 1018 188 14 39 chr11 109480844 109481052 -41302501 - AluJb SINE Alu -18 294 92 43 47 0 0 chr11 109481404 109481468 -41302085 + AT_rich Low_complexity Low_complexity 1 64 0 24 67 0 0 chr11 109481549 109481594 -41301959 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr11 109482907 109482930 -41300623 + AT_rich Low_complexity Low_complexity 1 23 0 180 77 0 0 chr11 109483406 109483432 -41300121 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 467 149 0 0 chr11 109483449 109483536 -41300017 - MER2 DNA MER2_type -136 209 123 1542 213 0 10 chr11 109483538 109483829 -41299724 + AluJo SINE Alu 1 288 -24 395 194 11 32 chr11 109483921 109484014 -41299539 - MER2 DNA MER2_type -228 117 27 456 19 0 0 chr11 109485127 109485180 -41298373 + (CA)n Simple_repeat Simple_repeat 2 54 0 309 309 12 0 chr11 109485279 109485363 -41298190 + MIR SINE MIR 47 131 -131 36 82 0 0 chr11 109485596 109485681 -41297872 + AT_rich Low_complexity Low_complexity 1 85 0 328 198 25 0 chr11 109487368 109487449 -41296104 - L1MA6 LINE L1 0 6300 6218 315 293 121 17 chr11 109488173 109488289 -41295264 + L2 LINE L2 3186 3313 0 1864 273 35 6 chr11 109488713 109489204 -41294349 - MLT1F1 LTR MaLR -8 559 55 538 342 40 4 chr11 109489241 109489469 -41294084 - MIR SINE MIR -26 236 1 467 278 43 0 chr11 109489649 109489764 -41293789 - FLAM_A SINE Alu -22 120 1 33 66 0 0 chr11 109489764 109489825 -41293728 + AT_rich Low_complexity Low_complexity 1 61 0 1010 174 0 41 chr11 109491189 109491384 -41292169 - MER3 DNA MER1_type -21 188 2 386 257 211 12 chr11 109491929 109492100 -41291453 + MIR SINE MIR 49 253 -9 27 62 0 0 chr11 109492303 109492351 -41291202 + AT_rich Low_complexity Low_complexity 1 48 0 224 349 0 0 chr11 109492633 109492696 -41290857 + L2 LINE L2 3250 3312 -1 751 267 102 51 chr11 109492720 109493195 -41290358 - MLT1H LTR MaLR -7 542 1 297 290 11 0 chr11 109493306 109493399 -41290154 + LTR33 LTR ERVL 428 521 0 23 33 0 0 chr11 109493577 109493607 -41289946 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr11 109493670 109493693 -41289860 + AT_rich Low_complexity Low_complexity 1 23 0 421 281 197 6 chr11 109493693 109493871 -41289682 + MIR SINE MIR 49 260 -2 238 213 125 12 chr11 109495433 109495513 -41288040 - MIR SINE MIR -10 252 164 204 143 0 0 chr11 109495742 109495784 -41287769 + (ATG)n Simple_repeat Simple_repeat 2 43 0 282 359 118 0 chr11 109495796 109495966 -41287587 - MIR SINE MIR -16 246 57 263 346 25 44 chr11 109497321 109497480 -41286073 - L2 LINE L2 0 3313 3158 552 293 159 73 chr11 109497615 109498523 -41285030 + L1MEd LINE L1 272 1257 -4862 351 282 118 9 chr11 109498563 109498673 -41284880 + MER96 DNA MER1_type? 5 126 -49 311 218 89 10 chr11 109498703 109498804 -41284749 - MER96 DNA MER1_type? -51 124 16 254 209 60 15 chr11 109499934 109500001 -41283552 - MLT1J LTR MaLR -19 492 423 192 200 0 0 chr11 109500602 109500642 -41282911 + (CA)n Simple_repeat Simple_repeat 1 40 0 218 189 0 0 chr11 109501482 109501519 -41282034 + (CA)n Simple_repeat Simple_repeat 2 38 0 587 14 14 0 chr11 109501822 109501894 -41281659 + (TG)n Simple_repeat Simple_repeat 1 73 0 35 24 0 0 chr11 109502223 109502265 -41281288 + AT_rich Low_complexity Low_complexity 1 42 0 2216 118 0 0 chr11 109502977 109503281 -41280272 + AluSx SINE Alu 1 304 -8 440 204 21 0 chr11 109504233 109504326 -41279227 + L3 LINE CR1 1189 1283 -294 181 362 112 9 chr11 109504332 109504448 -41279105 + L3 LINE CR1 1426 1553 -24 352 314 10 0 chr11 109505052 109505154 -41278399 + GA-rich Low_complexity Low_complexity 3 105 0 211 303 114 40 chr11 109506239 109506414 -41277139 + MIR SINE MIR 59 246 -16 24 0 0 0 chr11 109506968 109506992 -41276561 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 109509436 109509464 -41274089 + AT_rich Low_complexity Low_complexity 1 28 0 843 169 52 0 chr11 109509646 109509800 -41273753 - L1 LINE L1 -1941 4205 4044 30 0 0 0 chr11 109509866 109509896 -41273657 + AT_rich Low_complexity Low_complexity 1 30 0 1033 144 0 0 chr11 109510101 109510254 -41273299 - MER57-int LTR ERV1 -1194 6343 6191 4942 202 36 12 chr11 109510254 109511451 -41272102 - L1 LINE L1 -2097 4049 2824 1603 213 18 13 chr11 109511456 109511851 -41271702 + L1 LINE L1 4202 4598 -1548 9483 122 49 4 chr11 109512124 109512817 -41270736 - MER57B-int LTR ERV1 -404 7133 6472 2788 16 0 0 chr11 109512817 109513128 -41270425 + AluYb8 SINE Alu 1 311 -7 9483 122 49 4 chr11 109513128 109513865 -41269688 - MER57B-int LTR ERV1 -1065 6472 5639 334 151 91 0 chr11 109513859 109513950 -41269603 - MER57B-int LTR ERV1 -3236 2856 2648 * 2020 142 67 4 chr11 109513946 109514453 -41269100 - MER57B-int LTR ERV1 -3929 2017 1374 1903 139 13 3 chr11 109514443 109514744 -41268809 - MER57B-int LTR ERV1 -5355 591 288 * 4180 138 20 3 chr11 109514741 109515387 -41268166 - MER57B-int LTR ERV1 -6865 672 16 2777 122 16 2 chr11 109515390 109515818 -41267735 - MER57B LTR ERV1 0 434 1 321 146 18 0 chr11 109515821 109515876 -41267677 + L1M4 LINE L1 738 793 -5487 1844 154 20 5 chr11 109515876 109516314 -41267239 + LTR19A LTR ERV1 1 480 -6 1476 220 22 36 chr11 109516336 109516786 -41266767 + L1M4 LINE L1 794 1237 -5043 2896 156 25 21 chr11 109516788 109517319 -41266234 - L1PB4 LINE L1 -170 5986 5454 2363 185 12 4 chr11 109517320 109517802 -41265751 - L1PB4 LINE L1 -1973 4173 3688 * 3322 252 61 30 chr11 109517796 109519693 -41263860 + L1M4 LINE L1 1580 3629 -2753 339 234 169 19 chr11 109519687 109519731 -41263822 + L1MB7 LINE L1 5993 6029 -155 * 559 240 7 0 chr11 109519731 109519885 -41263668 - L1MA4 LINE L1 -6 6294 6140 339 234 169 19 chr11 109519885 109519994 -41263559 + L1MB7 LINE L1 6029 6169 -15 34 24 0 0 chr11 109520115 109520156 -41263397 + AT_rich Low_complexity Low_complexity 1 41 0 2119 126 0 0 chr11 109522921 109523222 -41260331 + AluSx SINE Alu 1 301 -11 401 304 108 0 chr11 109523414 109523572 -41259981 + MIR SINE MIR 5 179 -83 966 53 0 0 chr11 109523845 109524007 -41259546 + AluY SINE Alu 171 332 0 424 145 0 0 chr11 109524009 109524085 -41259468 - L1MB2 LINE L1 -8 6163 6088 188 33 0 33 chr11 109524577 109524607 -41258946 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 291 325 33 0 chr11 109526036 109526187 -41257366 - L1MDb LINE L1 -5059 1885 1730 252 207 61 12 chr11 109526254 109526336 -41257217 - L1MDb LINE L1 -4926 1497 1412 27 87 0 0 chr11 109526996 109527065 -41256488 + AT_rich Low_complexity Low_complexity 1 69 0 311 267 48 0 chr11 109527277 109527382 -41256171 + L1MA10 LINE L1 6216 6325 -9 502 304 38 4 chr11 109527771 109528008 -41255545 - L1ME2 LINE L1 -27 6137 5893 481 279 53 65 chr11 109528061 109528162 -41255391 - L1M4 LINE L1 -2209 4748 4647 2101 108 10 0 chr11 109528162 109528450 -41255103 - AluSg SINE Alu -19 291 1 481 279 53 65 chr11 109528450 109528670 -41254883 - L1M4 LINE L1 -2310 4647 4431 392 264 85 0 chr11 109528675 109528781 -41254772 - L1M4 LINE L1 -6732 127 13 21 57 0 0 chr11 109529397 109529432 -41254121 + AT_rich Low_complexity Low_complexity 1 35 0 307 319 42 0 chr11 109529547 109529666 -41253887 + MIR SINE MIR 68 191 -71 302 278 41 31 chr11 109529875 109529972 -41253581 + MIR SINE MIR 165 262 0 22 56 0 0 chr11 109530588 109530624 -41252929 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr11 109530907 109530936 -41252617 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr11 109531339 109531361 -41252192 + AT_rich Low_complexity Low_complexity 1 22 0 268 316 0 13 chr11 109531924 109532000 -41251553 + GA-rich Low_complexity Low_complexity 3 77 0 381 170 0 125 chr11 109532155 109532267 -41251286 - MER5A DNA MER1_type -83 106 9 222 343 121 20 chr11 109535499 109535598 -41247955 - MIR SINE MIR -81 127 19 337 358 56 78 chr11 109536582 109536850 -41246703 + L2 LINE L2 2991 3252 -20 31 0 0 0 chr11 109536910 109536941 -41246612 + AT_rich Low_complexity Low_complexity 1 31 0 262 364 125 41 chr11 109536950 109537198 -41246355 - L2 LINE L2 -591 2723 2497 1843 133 3 11 chr11 109537198 109537484 -41246069 + AluSx SINE Alu 18 301 -11 262 364 125 41 chr11 109537484 109537900 -41245653 - L2 LINE L2 -817 2497 2003 1156 232 59 103 chr11 109537986 109538530 -41245023 + MLT2B1 LTR ERVL 1 520 0 252 77 58 0 chr11 109538542 109538594 -41244959 + (TA)n Simple_repeat Simple_repeat 1 55 0 483 275 7 14 chr11 109538982 109539124 -41244429 - ERVL LTR ERVL -1476 4288 4148 955 172 27 84 chr11 109539291 109539552 -41244001 - MLT1B LTR MaLR 0 390 145 285 314 9 9 chr11 109540706 109540811 -41242742 - MIR SINE MIR 0 262 158 366 304 26 0 chr11 109541073 109541188 -41242365 + GA-rich Low_complexity Low_complexity 3 120 0 256 274 0 0 chr11 109541281 109541354 -41242199 + MER116 DNA Mariner 1 73 -7 1854 61 4 0 chr11 109541932 109542162 -41241391 - AluY SINE Alu -80 231 1 26 0 0 0 chr11 109542170 109542196 -41241357 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr11 109542336 109542362 -41241191 + AT_rich Low_complexity Low_complexity 1 26 0 188 269 129 21 chr11 109545445 109545538 -41238015 + L3 LINE CR1 1300 1402 -175 2320 110 3 0 chr11 109545811 109546119 -41237434 + AluSp SINE Alu 1 309 -4 333 0 0 0 chr11 109547135 109547172 -41236381 + (CA)n Simple_repeat Simple_repeat 2 38 0 544 174 13 20 chr11 109547324 109547473 -41236080 + GA-rich Low_complexity Low_complexity 4 151 0 25 65 0 0 chr11 109548061 109548107 -41235446 + AT_rich Low_complexity Low_complexity 1 46 0 339 154 0 0 chr11 109548144 109548209 -41235344 + (CA)n Simple_repeat Simple_repeat 2 66 0 236 280 27 13 chr11 109548244 109548319 -41235234 + L1 LINE L1 4501 4576 -1570 388 292 80 61 chr11 109548354 109548717 -41234836 + L1 LINE L1 4758 5127 -1019 558 253 88 60 chr11 109548922 109549326 -41234227 + MLT1H LTR MaLR 30 547 -2 21 95 0 0 chr11 109550739 109550802 -41232751 + AT_rich Low_complexity Low_complexity 1 63 0 198 0 0 0 chr11 109551184 109551206 -41232347 + (CA)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr11 109551219 109551241 -41232312 + AT_rich Low_complexity Low_complexity 1 22 0 459 209 35 0 chr11 109551602 109551717 -41231836 + L1MA6 LINE L1 6182 6300 0 201 121 0 0 chr11 109551726 109551759 -41231794 + (CA)n Simple_repeat Simple_repeat 2 34 0 1018 169 58 8 chr11 109551811 109552053 -41231500 + MER33 DNA MER1_type 2 255 -69 193 323 15 15 chr11 109552432 109552497 -41231056 - MIR SINE MIR -184 78 14 384 314 49 79 chr11 109552674 109553040 -41230513 - LTR16C LTR ERVL -48 443 89 1981 130 41 0 chr11 109553765 109554057 -41229496 + AluSx SINE Alu 1 304 -8 3127 122 47 4 chr11 109554446 109554936 -41228617 - MER9 LTR ERVK 0 511 1 326 221 26 13 chr11 109556122 109556199 -41227354 + L1MC4 LINE L1 6628 6705 -1337 * 336 235 0 82 chr11 109556146 109556244 -41227309 - L1MC4 LINE L1 -1339 6703 6614 928 71 16 0 chr11 109556308 109556434 -41227119 + L1MA1 LINE L1 6175 6302 0 438 305 82 79 chr11 109556445 109556748 -41226805 - L2 LINE L2 -81 3232 2933 2296 79 0 10 chr11 109556748 109557052 -41226501 + AluY SINE Alu 1 301 -10 438 305 82 79 chr11 109557052 109557287 -41226266 - L2 LINE L2 -380 2933 2700 803 299 120 56 chr11 109557291 109557974 -41225579 - L2 LINE L2 -805 2509 1783 22 35 0 0 chr11 109558006 109558035 -41225518 + AT_rich Low_complexity Low_complexity 1 29 0 369 351 71 0 chr11 109558701 109558855 -41224698 + MIR SINE MIR 26 190 -72 2435 77 0 6 chr11 109561697 109562010 -41221543 - AluY SINE Alu 0 311 1 189 273 0 0 chr11 109562189 109562233 -41221320 - MIR SINE MIR -1 261 218 894 94 0 0 chr11 109563762 109563929 -41219624 + AluSg/x SINE Alu 157 323 0 846 88 0 0 chr11 109564063 109564176 -41219377 - AluY SINE Alu -179 132 20 1313 121 25 0 chr11 109564188 109564387 -41219166 + AluSc SINE Alu 102 305 -4 25 31 0 0 chr11 109564472 109564504 -41219049 + AT_rich Low_complexity Low_complexity 1 32 0 984 176 5 42 chr11 109565072 109565265 -41218288 - MLT1A1 LTR MaLR -177 188 3 411 275 0 0 chr11 109565267 109565358 -41218195 - MLT1A1-int LTR MaLR 0 1735 1645 232 190 51 0 chr11 109565359 109565438 -41218115 + (TA)n Simple_repeat Simple_repeat 2 84 0 5763 216 76 64 chr11 109565438 109565732 -41217821 - MLT1A1-int LTR MaLR -82 1653 1364 805 143 0 0 chr11 109565732 109565858 -41217695 + L1MA3 LINE L1 6180 6305 0 5763 216 76 64 chr11 109565858 109567069 -41216484 - MLT1A1-int LTR MaLR -371 1364 130 277 130 22 0 chr11 109567096 109567142 -41216411 + MSTB2 LTR MaLR 409 455 -2 3786 214 45 35 chr11 109567281 109567936 -41215617 - L1MB4 LINE L1 -8 6172 5525 180 77 0 0 chr11 109567936 109567962 -41215591 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 3786 214 45 35 chr11 109567962 109569070 -41214483 - L1MB4 LINE L1 -655 5525 4397 21 0 0 0 chr11 109570499 109570520 -41213033 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr11 109570683 109570715 -41212838 + AT_rich Low_complexity Low_complexity 1 32 0 1113 179 69 55 chr11 109570752 109571054 -41212499 + AluJb SINE Alu 4 309 0 227 0 91 0 chr11 109571256 109571289 -41212264 + A-rich Low_complexity Low_complexity 5 40 0 669 284 67 35 chr11 109571371 109571684 -41211869 + L3 LINE CR1 1065 1387 -190 199 274 0 48 chr11 109571735 109571797 -41211756 + L3 LINE CR1 1516 1574 -3 236 208 0 19 chr11 109572044 109572097 -41211456 + MER116 DNA Mariner 26 77 -3 199 325 88 18 chr11 109573809 109573923 -41209630 - MIR SINE MIR -90 172 51 1613 205 30 22 chr11 109574920 109575291 -41208262 + MLT1A2 LTR MaLR 1 374 0 322 300 42 8 chr11 109575377 109575497 -41208056 - L3 LINE CR1 -326 1251 1128 29 84 0 0 chr11 109576303 109576374 -41207179 + AT_rich Low_complexity Low_complexity 1 71 0 1891 59 0 17 chr11 109576409 109576646 -41206907 + AluY SINE Alu 56 288 -23 504 244 44 76 chr11 109577189 109577414 -41206139 - L2 LINE L2 -7 3306 3089 272 143 0 0 chr11 109577452 109577494 -41206059 + 5S rRNA rRNA 1 42 -79 1894 252 26 26 chr11 109578535 109579143 -41204410 + L1ME2 LINE L1 5421 6028 -136 1497 81 10 0 chr11 109579315 109579524 -41204029 + L1PA7 LINE L1 5941 6151 -3 306 396 30 25 chr11 109579588 109579785 -41203768 - MIR SINE MIR -35 227 30 357 43 0 0 chr11 109581617 109581664 -41201889 + (TA)n Simple_repeat Simple_repeat 1 47 0 489 48 0 0 chr11 109581669 109581731 -41201822 - L1PA5 LINE L1 -8 6146 6085 270 263 167 18 chr11 109581826 109581940 -41201613 - L2 LINE L2 -327 2986 2856 3609 161 21 30 chr11 109582004 109582711 -41200842 - MER67C LTR ERV1 0 710 10 418 319 147 0 chr11 109582737 109582894 -41200659 - MER5A DNA MER1_type -1 188 9 1687 166 22 54 chr11 109583062 109583430 -41200123 - MER44D DNA MER2_type -4 601 191 6603 205 132 30 chr11 109583430 109585022 -41198531 - MER52A LTR ERV1 0 1755 1 9643 168 64 53 chr11 109585022 109586589 -41196964 - MER4C-int LTR ERV1 -1573 5025 3476 2295 101 0 0 chr11 109586589 109586897 -41196656 + AluY SINE Alu 1 308 -3 9643 168 64 53 chr11 109586897 109587382 -41196171 - MER4C-int LTR ERV1 -3122 3476 2998 1754 190 3 3 chr11 109587382 109587692 -41195861 + AluJb SINE Alu 1 310 -2 9643 168 64 53 chr11 109587692 109589339 -41194214 - MER4C-int LTR ERV1 -3600 2998 1260 237 237 0 0 chr11 109589459 109589518 -41194035 + (TA)n Simple_repeat Simple_repeat 2 60 0 209 122 24 0 chr11 109589563 109589604 -41193949 + (TA)n Simple_repeat Simple_repeat 1 42 0 328 159 48 0 chr11 109589620 109589683 -41193870 - MER4C-int LTR ERV1 -4661 1670 1605 205 240 0 20 chr11 109589683 109589733 -41193820 + (TA)n Simple_repeat Simple_repeat 2 50 0 323 77 21 0 chr11 109589778 109589834 -41193719 - MER4C-int LTR ERV1 -3932 2014 510 350 208 117 0 chr11 109589917 109589994 -41193559 - MER4C-int LTR ERV1 -5638 960 875 255 260 27 14 chr11 109589996 109590069 -41193484 - LTR49 LTR ERV1 -260 335 262 2085 167 50 30 chr11 109590203 109590772 -41192781 - MER4C-int LTR ERV1 -5912 686 1 1205 139 19 19 chr11 109590779 109590994 -41192559 - MER4C LTR ERV1 -3 462 248 * 1684 149 65 3 chr11 109590993 109591302 -41192251 - MER4C LTR ERV1 -137 328 1 255 323 11 11 chr11 109591310 109591403 -41192150 - L2 LINE L2 -864 2450 2358 273 338 22 22 chr11 109591729 109591865 -41191688 - L2 LINE L2 -563 2751 2616 532 302 35 54 chr11 109591937 109592195 -41191358 + MIR SINE MIR 10 262 0 186 373 22 30 chr11 109592178 109592312 -41191241 - MIR3 SINE MIR -71 137 5 * 216 0 0 0 chr11 109592408 109592432 -41191121 + (CATTT)n Simple_repeat Simple_repeat 4 27 0 268 385 48 0 chr11 109592537 109592641 -41190912 + L2 LINE L2 3160 3268 -4 21 36 0 0 chr11 109595078 109595106 -41188447 + AT_rich Low_complexity Low_complexity 1 28 0 737 158 8 23 chr11 109595221 109595354 -41188199 + FLAM_C SINE Alu 3 133 0 867 166 82 228 chr11 109595628 109596225 -41187328 - MER67D LTR ERV1 -4 510 1 30 27 0 0 chr11 109596418 109596455 -41187098 + AT_rich Low_complexity Low_complexity 1 37 0 432 294 59 0 chr11 109596604 109596723 -41186830 - L2 LINE L2 -5 3308 3183 328 272 92 96 chr11 109597135 109597385 -41186168 + MARNA DNA Mariner 133 381 -205 1991 120 0 0 chr11 109599787 109600071 -41183482 + AluSq SINE Alu 1 284 -29 2277 96 10 0 chr11 109600292 109600595 -41182958 + AluSp SINE Alu 1 306 -7 21 0 0 0 chr11 109600693 109600714 -41182839 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr11 109601122 109601150 -41182403 + AT_rich Low_complexity Low_complexity 1 28 0 2014 75 4 8 chr11 109601299 109601565 -41181988 + AluY SINE Alu 38 302 -9 2183 128 0 0 chr11 109601881 109602187 -41181366 + AluSx SINE Alu 1 306 -6 236 229 16 0 chr11 109602404 109602465 -41181088 - MLT1G1 LTR MaLR -10 585 524 483 263 100 23 chr11 109602561 109602796 -41180757 - MLT1H LTR MaLR -256 293 1 354 253 7 20 chr11 109603079 109603200 -41180353 - MLT1I LTR MaLR 0 549 278 936 268 25 89 chr11 109603762 109604243 -41179310 - MER90 LTR ERV1 -45 569 120 247 357 82 31 chr11 109605221 109605417 -41178136 + L3 LINE CR1 1368 1573 -4 190 322 82 65 chr11 109605883 109606128 -41177425 + L2 LINE L2 3065 3313 0 338 220 0 4 chr11 109606671 109606743 -41176810 + AluJ/monomer SINE Alu 1 53 -246 294 292 9 18 chr11 109606755 109606868 -41176685 + (TA)n Simple_repeat Simple_repeat 2 113 0 369 246 0 0 chr11 109606868 109606933 -41176620 + Tigger3(Golem) DNA MER2_type 2 66 -2963 329 43 21 0 chr11 109606935 109606982 -41176571 + (TG)n Simple_repeat Simple_repeat 2 49 0 2132 125 6 0 chr11 109607348 109607659 -41175894 + AluSq SINE Alu 1 313 0 469 365 6 11 chr11 109607781 109607959 -41175594 + MER5B DNA MER1_type 1 177 -1 192 399 63 14 chr11 109608143 109608286 -41175267 - L2 LINE L2 -225 3047 2898 2322 97 0 0 chr11 109609420 109609729 -41173824 - AluSg SINE Alu -1 309 1 23 0 0 0 chr11 109610240 109610263 -41173290 + AT_rich Low_complexity Low_complexity 1 23 0 947 97 103 0 chr11 109611335 109611510 -41172043 - L1MA7 LINE L1 -8 6283 6091 680 209 36 45 chr11 109611691 109611914 -41171639 - L1MA8 LINE L1 -106 6185 5982 3788 82 6 0 chr11 109612773 109613272 -41170281 - MER41A LTR ERV1 0 554 53 221 386 55 43 chr11 109614237 109614388 -41169165 + L2 LINE L2 2817 2974 -298 686 246 18 6 chr11 109614388 109614559 -41168994 + MER5B DNA MER1_type 2 174 -4 221 386 55 43 chr11 109614559 109614661 -41168892 + L2 LINE L2 2974 3073 -199 2199 114 3 0 chr11 109614681 109614979 -41168574 + AluSx SINE Alu 1 299 -13 1997 131 7 0 chr11 109615530 109615875 -41167678 - AluSq SINE Alu 0 347 1 217 300 83 0 chr11 109616570 109616630 -41166923 + L2 LINE L2 3249 3313 0 1194 217 31 8 chr11 109616679 109616937 -41166616 - AluJo SINE Alu -20 292 29 21 36 0 0 chr11 109617468 109617496 -41166057 + AT_rich Low_complexity Low_complexity 1 28 0 247 0 0 73 chr11 109618747 109618788 -41164765 + (TAAAAA)n Simple_repeat Simple_repeat 5 42 0 591 291 66 0 chr11 109619938 109620120 -41163433 - MIR SINE MIR -28 234 41 24 53 0 0 chr11 109621047 109621085 -41162468 + AT_rich Low_complexity Low_complexity 1 38 0 5893 112 9 9 chr11 109621089 109622751 -41160802 - L1PA13 LINE L1 -6 6157 4492 374 346 55 14 chr11 109623409 109623626 -41159927 - MIR SINE MIR -3 259 34 6501 208 92 14 chr11 109623634 109624056 -41159497 - L1MC3 LINE L1 -286 7499 7111 213 39 0 0 chr11 109624056 109624082 -41159471 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 6501 208 92 14 chr11 109624082 109624223 -41159330 - L1MC3 LINE L1 -674 7111 6982 182 36 0 36 chr11 109624223 109624251 -41159302 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 6501 208 92 14 chr11 109624251 109625384 -41158169 - L1MC3 LINE L1 -803 6982 5670 30 27 0 0 chr11 109625988 109626025 -41157528 + AT_rich Low_complexity Low_complexity 1 37 0 2543 120 11 41 chr11 109626405 109626870 -41156683 - L1MA2 LINE L1 0 7723 7273 19256 194 37 15 chr11 109626909 109629471 -41154082 - L1MA2 LINE L1 -446 7277 4772 2235 99 20 0 chr11 109629471 109629765 -41153788 - AluY SINE Alu -11 300 1 19256 194 37 15 chr11 109629765 109632074 -41151479 - L1MA2 LINE L1 -2951 4772 2515 2880 9 0 0 chr11 109632074 109632392 -41151161 + AluYb8 SINE Alu 1 318 0 19256 194 37 15 chr11 109632392 109634639 -41148914 - L1MA2 LINE L1 -5208 2515 9 1051 185 99 21 chr11 109634702 109634834 -41148719 - AluJo SINE Alu -30 282 162 930 58 22 7 chr11 109634834 109634972 -41148581 + (GAAA)n Simple_repeat Simple_repeat 2 141 0 1051 185 99 21 chr11 109634972 109635082 -41148471 - AluJo SINE Alu -150 162 21 2025 118 0 22 chr11 109635648 109635961 -41147592 + AluY SINE Alu 1 306 -5 1614 190 30 3 chr11 109637712 109638012 -41145541 + AluJb SINE Alu 1 308 -4 195 42 0 0 chr11 109638971 109638995 -41144558 + (CAT)n Simple_repeat Simple_repeat 1 24 0 360 306 48 20 chr11 109639013 109639160 -41144393 - MIR SINE MIR -27 235 85 1976 134 3 0 chr11 109639803 109640131 -41143422 + AluSq SINE Alu 1 329 0 253 212 0 106 chr11 109640835 109640901 -41142652 - L2 LINE L2 -17 3296 3238 199 203 29 0 chr11 109640906 109640975 -41142578 + (TA)n Simple_repeat Simple_repeat 1 71 0 649 314 77 21 chr11 109641000 109641325 -41142228 - L2 LINE L2 -141 3172 2830 2683 191 40 46 chr11 109641542 109642169 -41141384 - MER39 LTR ERV1 0 707 85 599 241 8 17 chr11 109642468 109642644 -41140909 - MER63 DNA MER1_type -1 1687 658 1469 202 3 30 chr11 109642753 109643050 -41140503 - AluJo SINE Alu -21 291 3 1685 170 134 0 chr11 109643063 109643392 -41140161 - MER83C LTR ERV1 0 373 1 30 0 0 0 chr11 109643559 109643589 -41139964 + AT_rich Low_complexity Low_complexity 1 30 0 276 264 112 40 chr11 109645359 109645484 -41138069 + MIR SINE MIR 11 144 -118 210 273 76 0 chr11 109645668 109645734 -41137819 + MER91C DNA MER1_type 32 102 -38 21 82 0 0 chr11 109645852 109645901 -41137652 + AT_rich Low_complexity Low_complexity 1 49 0 308 114 0 0 chr11 109646802 109646846 -41136707 - MADE1 DNA Mariner 0 80 37 216 200 0 0 chr11 109647149 109647194 -41136359 + CT-rich Low_complexity Low_complexity 4 48 0 241 299 87 47 chr11 109647194 109647575 -41135978 - L1MC/D LINE L1 -1901 5907 5512 186 143 0 0 chr11 109647693 109647728 -41135825 + (TG)n Simple_repeat Simple_repeat 2 36 0 223 382 81 7 chr11 109648339 109648475 -41135078 - L2 LINE L2 -1 3312 3167 259 335 38 13 chr11 109649012 109649170 -41134383 + MIR SINE MIR 87 248 -14 454 316 29 0 chr11 109649619 109649758 -41133795 - L2 LINE L2 -12 3301 3159 1375 318 60 25 chr11 109650121 109650760 -41132793 - L2 LINE L2 -2396 918 258 393 39 0 0 chr11 109650807 109650858 -41132695 + (TG)n Simple_repeat Simple_repeat 2 52 0 380 283 35 92 chr11 109653632 109653805 -41129748 - MIR SINE MIR -16 246 84 615 336 106 16 chr11 109654212 109654533 -41129020 + L2 LINE L2 2029 2378 -936 23 33 0 0 chr11 109654804 109654834 -41128719 + AT_rich Low_complexity Low_complexity 1 30 0 2036 120 20 0 chr11 109654981 109655282 -41128271 + AluSq SINE Alu 1 307 -6 261 370 41 7 chr11 109655744 109655890 -41127663 - MIR SINE MIR -93 169 19 27 0 0 0 chr11 109656029 109656056 -41127497 + AT_rich Low_complexity Low_complexity 1 27 0 204 40 0 0 chr11 109656726 109656751 -41126802 + (TG)n Simple_repeat Simple_repeat 2 26 0 2472 78 0 0 chr11 109656864 109657173 -41126380 + AluSx SINE Alu 4 312 0 38 0 0 0 chr11 109657835 109657873 -41125680 + AT_rich Low_complexity Low_complexity 1 38 0 396 273 16 31 chr11 109658231 109658359 -41125194 - MLT1J1 LTR MaLR -313 133 8 22 0 0 0 chr11 109658407 109658429 -41125124 + AT_rich Low_complexity Low_complexity 1 22 0 568 227 0 8 chr11 109658434 109658553 -41125000 - FLAM_A SINE Alu -14 119 2 2078 114 10 0 chr11 109659616 109659905 -41123648 - AluSx SINE Alu -20 292 1 1935 145 0 3 chr11 109661355 109661659 -41121894 + AluSx SINE Alu 5 307 -5 248 214 90 34 chr11 109662122 109662211 -41121342 + L1MC4 LINE L1 6619 6712 -1330 390 211 0 0 chr11 109662450 109662564 -41120989 + (TA)n Simple_repeat Simple_repeat 1 114 0 233 261 0 43 chr11 109662581 109662673 -41120880 + (TATATG)n Simple_repeat Simple_repeat 2 89 0 2320 83 0 3 chr11 109663237 109663537 -41120016 + AluSq SINE Alu 1 299 -14 195 359 119 18 chr11 109663604 109663947 -41119606 + L2 LINE L2 2037 2414 -900 328 302 44 46 chr11 109664478 109664656 -41118897 + MIR SINE MIR 11 187 -67 424 371 45 0 chr11 109664893 109665071 -41118482 + MIR SINE MIR 35 220 -42 2178 120 0 0 chr11 109665080 109665381 -41118172 + AluSg SINE Alu 1 301 -9 21 57 0 0 chr11 109665464 109665499 -41118054 + AT_rich Low_complexity Low_complexity 1 35 0 244 286 18 0 chr11 109666105 109666161 -41117392 - MIR SINE MIR -69 139 83 1607 179 3 18 chr11 109666166 109666515 -41117038 - AluJb SINE Alu 0 347 3 231 284 68 0 chr11 109666955 109667043 -41116510 - MLT1H1 LTR MaLR -2 553 460 254 154 31 0 chr11 109667691 109667756 -41115797 + L1MC4 LINE L1 6638 6704 -1338 217 175 25 0 chr11 109667756 109667796 -41115757 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 387 156 33 100 chr11 109667805 109667895 -41115658 + MER82 DNA MER2_type 8 91 -562 255 306 129 29 chr11 109667932 109668102 -41115451 - MIR SINE MIR -74 188 2 766 222 32 77 chr11 109668125 109668346 -41115207 + MER82 DNA MER2_type 442 652 -1 26 0 0 0 chr11 109669459 109669485 -41114068 + AT_rich Low_complexity Low_complexity 1 26 0 275 327 10 20 chr11 109669492 109669593 -41113960 - MIR3 SINE MIR -11 197 98 2312 87 0 3 chr11 109669808 109670108 -41113445 - AluY SINE Alu -12 299 1 335 340 63 16 chr11 109670269 109670460 -41113093 - MIR SINE MIR -15 247 48 1455 133 47 92 chr11 109671707 109672157 -41111396 + THE1C LTR MaLR 1 428 0 532 328 12 19 chr11 109672524 109672783 -41110770 + L1MEd LINE L1 566 822 -5297 24 0 0 0 chr11 109674311 109674335 -41109218 + AT_rich Low_complexity Low_complexity 1 24 0 338 367 25 0 chr11 109674355 109674475 -41109078 - L2 LINE L2 -1 3312 3190 2048 242 109 13 chr11 109675039 109675831 -41107722 - Charlie2 DNA MER1_type -38 2824 1957 501 279 18 109 chr11 109675850 109676133 -41107420 - Charlie2 DNA MER1_type -2522 260 4 316 402 48 15 chr11 109676326 109676659 -41106894 - L2 LINE L2 -411 2903 2560 237 297 152 14 chr11 109677085 109677230 -41106323 - L2 LINE L2 -34 3279 3115 56 83 0 0 chr11 109677631 109677764 -41105789 + AT_rich Low_complexity Low_complexity 1 133 0 377 236 68 56 chr11 109678038 109678199 -41105354 + L1MEc LINE L1 29 191 -6205 * 1314 254 67 32 chr11 109678185 109678678 -41104875 + L1ME1 LINE L1 5509 6018 -148 473 252 152 7 chr11 109679398 109679549 -41104004 + MER3 DNA MER1_type 37 209 0 227 175 0 0 chr11 109679516 109679556 -41103997 - MER3 DNA MER1_type -129 80 41 * 351 113 0 0 chr11 109679759 109679812 -41103741 + (T)n Simple_repeat Simple_repeat 1 53 0 1787 123 0 76 chr11 109680243 109680583 -41102970 + AluSx SINE Alu 6 322 0 2606 43 0 0 chr11 109680594 109680895 -41102658 + AluY SINE Alu 3 303 -8 347 244 11 22 chr11 109682975 109683065 -41100488 + L2 LINE L2 3225 3313 0 2000 130 115 43 chr11 109683088 109683310 -41100243 - MSTA LTR MaLR 0 428 224 2508 52 0 3 chr11 109683310 109683617 -41099936 - AluY SINE Alu -5 306 1 2000 130 115 43 chr11 109683617 109683793 -41099760 - MSTA LTR MaLR -204 224 1 473 250 45 39 chr11 109684298 109684454 -41099099 - MLT1J2 LTR MaLR -293 157 1 478 189 72 0 chr11 109684457 109684568 -41098985 - HAL1 LINE L1 -857 1650 1532 333 331 15 7 chr11 109684655 109684848 -41098705 - L1M4 LINE L1 -1022 5124 4934 25 51 0 0 chr11 109686288 109686327 -41097226 + AT_rich Low_complexity Low_complexity 1 39 0 295 365 2 8 chr11 109686548 109686689 -41096864 - MIR SINE MIR -58 150 13 21 36 0 0 chr11 109687340 109687368 -41096185 + AT_rich Low_complexity Low_complexity 1 28 0 656 257 106 26 chr11 109688064 109688290 -41095263 + MIR SINE MIR 1 244 -18 295 399 57 6 chr11 109688362 109688520 -41095033 + L2 LINE L2 3106 3271 -1 777 181 0 0 chr11 109689232 109689370 -41094183 - AluSg/x SINE Alu -2 310 173 24 0 0 0 chr11 109690199 109690223 -41093330 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr11 109690360 109690395 -41093158 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr11 109691102 109691137 -41092416 + AT_rich Low_complexity Low_complexity 1 35 0 560 233 38 23 chr11 109691488 109691621 -41091932 + MSTD LTR MaLR 1 135 -293 991 231 25 81 chr11 109691682 109692003 -41091550 + MSTD LTR MaLR 92 394 -2 447 298 118 29 chr11 109692131 109692477 -41091076 - L1M4 LINE L1 -1981 4165 3789 31 44 0 0 chr11 109692717 109692762 -41090791 + AT_rich Low_complexity Low_complexity 1 45 0 27 92 0 0 chr11 109693663 109693739 -41089814 + AT_rich Low_complexity Low_complexity 1 76 0 863 146 0 0 chr11 109694241 109694371 -41089182 + FLAM_C SINE Alu 1 130 -3 1718 236 147 21 chr11 109694638 109695163 -41088390 - MLT1E LTR MaLR -2 591 1 30 77 0 0 chr11 109695840 109695905 -41087648 + AT_rich Low_complexity Low_complexity 1 65 0 29 28 0 0 chr11 109696306 109696342 -41087211 + AT_rich Low_complexity Low_complexity 1 36 0 579 305 93 9 chr11 109696903 109697129 -41086424 + MIR SINE MIR 16 260 -2 198 295 0 64 chr11 109698014 109698092 -41085461 + L2 LINE L2 3231 3303 -10 193 397 41 0 chr11 109698098 109698244 -41085309 + L2 LINE L2 2689 2840 -474 22 0 0 0 chr11 109698830 109698852 -41084701 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 109699156 109699177 -41084376 + AT_rich Low_complexity Low_complexity 1 21 0 957 249 24 7 chr11 109699213 109699510 -41084043 + L1M4 LINE L1 4990 5291 -855 1921 91 0 8 chr11 109699513 109699776 -41083777 + AluSc SINE Alu 47 307 -2 2147 127 15 22 chr11 109699776 109700242 -41083311 - MER50 LTR ERV1 -161 573 60 5348 144 45 50 chr11 109700274 109701775 -41081778 + L1MA5A LINE L1 4606 6290 -7 1653 236 6 0 chr11 109701823 109702174 -41081379 + L1MC1 LINE L1 5961 6313 -20 192 303 117 48 chr11 109702868 109703013 -41080540 + L2 LINE L2 3106 3260 -12 230 279 0 15 chr11 109704589 109704657 -41078896 - MLT1J2 LTR MaLR -21 429 363 2235 103 0 0 chr11 109704721 109705021 -41078532 - AluSg SINE Alu 0 310 11 256 289 52 58 chr11 109705139 109705312 -41078241 - MLT1J1 LTR MaLR -272 174 3 24 53 0 0 chr11 109705601 109705639 -41077914 + AT_rich Low_complexity Low_complexity 1 38 0 201 180 0 0 chr11 109706388 109706438 -41077115 + GA-rich Low_complexity Low_complexity 1 50 0 703 326 85 21 chr11 109707967 109708936 -41074617 - ERVL LTR ERVL -811 4953 3873 21 36 0 0 chr11 109709117 109709145 -41074408 + AT_rich Low_complexity Low_complexity 1 28 0 1437 231 27 51 chr11 109709157 109709607 -41073946 - MER39 LTR ERV1 0 707 269 339 256 256 10 chr11 109710215 109710410 -41073143 - L2 LINE L2 -55 3258 3016 23 33 0 0 chr11 109710583 109710613 -41072940 + AT_rich Low_complexity Low_complexity 1 30 0 2175 103 3 10 chr11 109711743 109712043 -41071510 + AluSg SINE Alu 2 299 -11 477 354 114 35 chr11 109712338 109712915 -41070638 - L2 LINE L2 -604 2710 2088 547 99 0 0 chr11 109712927 109713008 -41070545 - AluSc SINE Alu -10 299 219 355 364 92 13 chr11 109713562 109713790 -41069763 + MIR SINE MIR 3 248 -14 215 270 0 16 chr11 109714785 109714848 -41068705 - L3b LINE CR1 -405 1178 1117 329 289 101 40 chr11 109715301 109715728 -41067825 + MLT1L LTR MaLR 142 572 -16 1117 211 69 58 chr11 109715907 109716268 -41067285 + MLT1A1 LTR MaLR 1 365 0 2015 131 23 57 chr11 109717161 109717549 -41066004 + THE1C LTR MaLR 1 375 0 290 420 50 25 chr11 109718316 109718554 -41064999 + L2 LINE L2 2997 3240 -32 2002 107 40 0 chr11 109719114 109719413 -41064140 + AluY SINE Alu 1 311 0 315 290 165 16 chr11 109721611 109721859 -41061694 + L1ME4a LINE L1 5636 5920 -201 2231 87 0 3 chr11 109721964 109722253 -41061300 + AluSc SINE Alu 16 303 -6 270 229 135 21 chr11 109723056 109723152 -41060401 + MIR SINE MIR 134 240 -22 30 0 0 0 chr11 109723180 109723210 -41060343 + AT_rich Low_complexity Low_complexity 1 30 0 332 274 32 0 chr11 109723342 109723437 -41060116 - MER2 DNA MER2_type -247 98 1 2236 100 3 7 chr11 109723525 109723834 -41059719 - AluSq SINE Alu -5 308 1 4961 85 39 19 chr11 109774027 109774746 -41008807 + THE1A-int LTR MaLR 848 1580 0 2317 132 3 3 chr11 109774746 109775101 -41008452 + THE1A LTR MaLR 1 355 0 1960 141 0 14 chr11 109775175 109775465 -41008088 + AluSx SINE Alu 1 286 -26 24 32 0 0 chr11 109776874 109776905 -41006648 + AT_rich Low_complexity Low_complexity 1 31 0 514 346 88 26 chr11 109777134 109777581 -41005972 - L2 LINE L2 -325 2947 2475 590 204 186 12 chr11 109777725 109777880 -41005673 - MER5B DNA MER1_type -14 164 1 314 351 9 0 chr11 109778889 109779003 -41004550 - MIR SINE MIR -27 235 121 971 149 111 89 chr11 109779010 109779326 -41004227 - MER33 DNA MER1_type -1 323 1 329 330 46 0 chr11 109779330 109779439 -41004114 - MIR SINE MIR -148 114 1 289 391 23 8 chr11 109779527 109779660 -41003893 - MIR SINE MIR -114 148 14 319 321 46 41 chr11 109781761 109781957 -41001596 - MIR SINE MIR -46 216 20 185 307 80 80 chr11 109782598 109782748 -41000805 - L2 LINE L2 -18 3254 3105 265 290 86 43 chr11 109782969 109783062 -41000491 + L2 LINE L2 3175 3271 -1 271 245 75 19 chr11 109783728 109783834 -40999719 - LTR16B LTR ERVL -86 378 267 635 155 71 184 chr11 109783862 109783902 -40999651 - MER20 DNA MER1_type 0 219 176 1444 215 0 40 chr11 109783902 109784227 -40999326 + AluJo SINE Alu 1 312 0 635 155 71 184 chr11 109784227 109784277 -40999276 - MER20 DNA MER1_type -43 176 122 2280 156 47 5 chr11 109784277 109784699 -40998854 - L1MA6 LINE L1 -1 6299 5860 635 155 71 184 chr11 109784699 109784720 -40998833 - MER20 DNA MER1_type -97 122 100 459 103 26 0 chr11 109784720 109784798 -40998755 + MADE1 DNA Mariner 1 80 0 635 155 71 184 chr11 109784798 109784923 -40998630 - MER20 DNA MER1_type -119 100 8 339 314 41 36 chr11 109784957 109785151 -40998402 - LTR16B LTR ERVL -247 217 23 2265 105 6 10 chr11 109785870 109786183 -40997370 + AluSx SINE Alu 1 312 0 922 214 26 2 chr11 109786232 109786584 -40996969 - MSTB LTR MaLR 0 426 1 1000 217 22 18 chr11 109788412 109788638 -40994915 - MER49 LTR ERV1 0 923 697 581 147 0 11 chr11 109788663 109788758 -40994795 - MER49 LTR ERV1 0 923 830 560 156 0 10 chr11 109788728 109788824 -40994729 + MER49 LTR ERV1 829 923 0 * 393 372 28 6 chr11 109788921 109789101 -40994452 + L2 LINE L2 2768 2951 -363 2307 89 3 3 chr11 109789230 109789533 -40994020 - AluSp SINE Alu -8 305 3 813 277 58 5 chr11 109790058 109790282 -40993271 + MIR SINE MIR 1 236 -26 850 309 58 24 chr11 109790496 109790874 -40992679 - MER93a LTR ERV1 -11 391 1 309 313 122 14 chr11 109790913 109791060 -40992493 - HAL1 LINE L1 -960 1547 1385 367 280 67 34 chr11 109791063 109791302 -40992251 - L1MEd LINE L1 -4864 1255 1009 24 0 0 0 chr11 109792157 109792181 -40991372 + AT_rich Low_complexity Low_complexity 1 24 0 1637 179 68 0 chr11 109793630 109793955 -40989598 - MER7A DNA MER2_type -1 345 1 2111 133 7 0 chr11 109793982 109794282 -40989271 - AluSx SINE Alu -8 304 3 815 290 107 54 chr11 109794362 109794854 -40988699 - L2 LINE L2 -6 3307 2779 218 179 0 0 chr11 109794881 109794920 -40988633 + CT-rich Low_complexity Low_complexity 2 40 0 842 201 5 0 chr11 109795655 109795839 -40987714 + L1MA7 LINE L1 6102 6286 -5 240 204 20 0 chr11 109795864 109795913 -40987640 + GA-rich Low_complexity Low_complexity 2 51 0 429 20 0 0 chr11 109796044 109796094 -40987459 + (CA)n Simple_repeat Simple_repeat 2 51 0 26 0 0 0 chr11 109797127 109797153 -40986400 + AT_rich Low_complexity Low_complexity 1 26 0 265 235 70 43 chr11 109798614 109798729 -40984824 - L1MC4 LINE L1 -1308 6734 6617 24 0 0 0 chr11 109799692 109799716 -40983837 + AT_rich Low_complexity Low_complexity 1 24 0 285 167 0 0 chr11 109800400 109800448 -40983105 - MER53 DNA DNA 0 189 142 22 35 0 0 chr11 109801184 109801213 -40982340 + AT_rich Low_complexity Low_complexity 1 29 0 6195 194 102 99 chr11 109801567 109802358 -40981195 + L1MC3 LINE L1 5424 6211 -1574 1951 121 7 0 chr11 109802358 109802677 -40980876 - AluSx SINE Alu 0 321 1 6195 194 102 99 chr11 109802677 109803541 -40980012 + L1MC3 LINE L1 6211 7188 -597 243 326 20 10 chr11 109803541 109803639 -40979914 + MLT1F1 LTR MaLR 35 133 -434 6195 194 102 99 chr11 109803639 109804057 -40979496 + L1MC3 LINE L1 7188 7603 -182 2062 218 53 50 chr11 109804065 109804648 -40978905 + MER34C LTR ERV1 1 585 0 358 250 39 0 chr11 109804648 109804752 -40978801 + L1MC3 LINE L1 7608 7715 -70 265 336 159 27 chr11 109804939 109805347 -40978206 - L2 LINE L2 -888 2426 1965 791 259 126 74 chr11 109805679 109806154 -40977399 - MLT1H LTR MaLR -4 545 46 1561 184 17 37 chr11 109806262 109806556 -40976997 - AluJo SINE Alu -24 288 1 207 0 0 0 chr11 109806668 109806691 -40976862 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2718 149 93 93 chr11 109807264 109808051 -40975502 + LTR48 LTR ERV1 1 787 0 2250 166 60 8 chr11 109808206 109808604 -40974949 + MSTB LTR MaLR 8 426 0 2051 88 0 0 chr11 109811460 109811773 -40971780 - AluSg SINE Alu 0 323 11 185 105 0 26 chr11 109812157 109812195 -40971358 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 207 100 0 0 chr11 109812304 109812334 -40971219 + (A)n Simple_repeat Simple_repeat 1 30 0 927 331 57 51 chr11 109812755 109813397 -40970156 - L2 LINE L2 -5 3308 2584 338 350 73 39 chr11 109813403 109813637 -40969916 + L3 LINE CR1 905 1146 -431 1291 144 0 58 chr11 109814336 109814579 -40968974 + MER30 DNA MER1_type 2 230 0 24 32 0 0 chr11 109814896 109814927 -40968626 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr11 109815344 109815367 -40968186 + AT_rich Low_complexity Low_complexity 1 23 0 2533 54 0 13 chr11 109815461 109815775 -40967778 + AluY SINE Alu 1 310 -1 747 118 0 0 chr11 109815809 109815919 -40967634 - AluSc SINE Alu -18 291 182 6410 85 0 16 chr11 109816089 109817086 -40966467 - L1PA7 LINE L1 -11 6143 5154 292 298 211 0 chr11 109817131 109817245 -40966308 + MIR3 SINE MIR 28 165 -43 2001 166 11 22 chr11 109818739 109819106 -40964447 - MLT1A1 LTR MaLR -2 363 1 198 0 0 0 chr11 109819967 109819989 -40963564 + (TTA)n Simple_repeat Simple_repeat 3 24 0 43951 40 2 1 chr11 109819989 109826116 -40957437 - L1PA4 LINE L1 -18 6137 1 4297 220 112 33 chr11 109826499 109827846 -40955707 + Charlie1a DNA MER1_type 1 1454 -1 202 182 0 0 chr11 109828086 109828119 -40955434 + polypyrimidine Low_complexity Low_complexity 4 36 0 214 318 0 0 chr11 109828674 109828762 -40954791 + MIR SINE MIR 175 262 0 2451 65 0 3 chr11 109830205 109830512 -40953041 + AluY SINE Alu 1 306 -5 347 308 58 0 chr11 109832617 109832721 -40950832 + MIR SINE MIR 47 156 -106 340 331 58 0 chr11 109832902 109833041 -40950512 - L2 LINE L2 -340 2974 2828 2332 87 0 10 chr11 109833604 109833904 -40949649 - AluSc SINE Alu -12 297 1 912 314 72 45 chr11 109834235 109834789 -40948764 - L2 LINE L2 -839 2475 1907 503 301 109 0 chr11 109835021 109835260 -40948293 - L2 LINE L2 -592 2722 2458 2325 154 29 5 chr11 109837196 109837617 -40945936 + L1MA6 LINE L1 5861 6291 -9 417 244 218 19 chr11 109838162 109838318 -40945235 + MER5A DNA MER1_type 3 189 0 504 179 0 0 chr11 109840482 109840594 -40942959 + T-rich Low_complexity Low_complexity 5 116 0 695 214 0 6 chr11 109840595 109840763 -40942790 + CT-rich Low_complexity Low_complexity 2 168 0 21 0 0 0 chr11 109842146 109842167 -40941386 + AT_rich Low_complexity Low_complexity 1 21 0 365 233 69 17 chr11 109842287 109842403 -40941150 + L1MA4A LINE L1 6011 6132 -171 459 183 0 32 chr11 109842410 109842503 -40941050 + L1MA4A LINE L1 6190 6279 -24 193 307 213 16 chr11 109843278 109843405 -40940148 + L2 LINE L2 3158 3309 -4 263 242 22 11 chr11 109844232 109844323 -40939230 + (TA)n Simple_repeat Simple_repeat 1 92 0 37924 28 23 1 chr11 109844955 109850385 -40933168 + L1HS LINE L1 606 6155 0 1293 203 75 43 chr11 109850652 109851026 -40932527 + MLT1B LTR MaLR 5 390 0 538 294 122 15 chr11 109852205 109852402 -40931151 - MIR SINE MIR -29 233 16 258 342 147 15 chr11 109854377 109854538 -40929015 - MIR SINE MIR -45 163 16 1948 154 11 29 chr11 109855405 109855787 -40927766 + THE1C LTR MaLR 1 375 0 286 182 50 16 chr11 109857262 109857383 -40926170 + (TA)n Simple_repeat Simple_repeat 2 126 0 1100 229 34 111 chr11 109857840 109858029 -40925524 - L1MD2 LINE L1 -15 6344 6201 1357 198 93 7 chr11 109858029 109858307 -40925246 - AluJb SINE Alu -10 302 1 1100 229 34 111 chr11 109858307 109858524 -40925029 - L1MD2 LINE L1 -158 6201 5969 396 336 87 0 chr11 109858563 109858712 -40924841 + MIR SINE MIR 19 180 -82 2365 93 0 10 chr11 109859100 109859413 -40924140 + AluSx SINE Alu 1 310 -2 303 205 260 0 chr11 109860398 109860525 -40923028 - Charlie1 DNA MER1_type -1 2760 2601 575 90 40 40 chr11 109861045 109861145 -40922408 + L1MA2 LINE L1 6205 6304 0 414 224 119 8 chr11 109861675 109861809 -40921744 - L1MB3 LINE L1 -8 6175 6027 2635 39 0 7 chr11 109862023 109862333 -40921220 + AluY SINE Alu 4 311 0 22 0 0 0 chr11 109862405 109862427 -40921126 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 109862682 109862706 -40920847 + AT_rich Low_complexity Low_complexity 1 24 0 219 69 0 0 chr11 109862793 109862822 -40920731 + (T)n Simple_repeat Simple_repeat 1 29 0 277 328 87 81 chr11 109863297 109863654 -40919899 - L2 LINE L2 -40 3232 2874 484 330 37 48 chr11 109865497 109865770 -40917783 - MLT1K LTR MaLR 0 588 319 180 77 0 0 chr11 109866052 109866078 -40917475 + (A)n Simple_repeat Simple_repeat 1 26 0 189 277 46 46 chr11 109867342 109867407 -40916146 + L2 LINE L2 3207 3271 -1 205 182 0 0 chr11 109868208 109868241 -40915312 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 746 125 70 0 chr11 109869023 109869151 -40914402 + L1MA4A LINE L1 6103 6239 -64 312 27 0 0 chr11 109870907 109870944 -40912609 + (CA)n Simple_repeat Simple_repeat 2 38 0 38 85 0 0 chr11 109872126 109872220 -40911333 + AT_rich Low_complexity Low_complexity 1 94 0 195 184 0 0 chr11 109872524 109872562 -40910991 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 38 39 0 0 chr11 109873717 109873769 -40909784 + AT_rich Low_complexity Low_complexity 1 52 0 220 241 37 0 chr11 109874020 109874074 -40909479 - MIR SINE MIR -137 125 70 1814 155 21 15 chr11 109874079 109874415 -40909138 + MER44D DNA MER2_type 2 609 0 337 296 66 31 chr11 109876564 109876760 -40906793 - L2 LINE L2 -1274 2040 1838 192 322 151 40 chr11 109877554 109877706 -40905847 + MIR3 SINE MIR 34 202 -6 27 0 0 0 chr11 109878286 109878313 -40905240 + AT_rich Low_complexity Low_complexity 1 27 0 591 319 40 43 chr11 109878699 109878975 -40904578 + LTR33 LTR ERVL 19 293 -228 2368 66 7 0 chr11 109879021 109879323 -40904230 + AluY SINE Alu 1 304 -7 362 291 64 64 chr11 109879469 109879705 -40903848 + L1ME3A LINE L1 5709 5952 -232 25 51 0 0 chr11 109880061 109880100 -40903453 + AT_rich Low_complexity Low_complexity 1 39 0 1668 153 79 59 chr11 109880244 109880315 -40903238 + MER7A DNA MER2_type 2 70 -2968 2238 108 44 3 chr11 109880315 109880656 -40902897 - THE1A LTR MaLR 0 355 1 10411 109 14 21 chr11 109880656 109881837 -40901716 - THE1A-int LTR MaLR 0 1580 393 2005 133 10 3 chr11 109881837 109882138 -40901415 - AluSp SINE Alu -4 309 7 1638 142 8 4 chr11 109882138 109882385 -40901168 - AluSx SINE Alu -59 253 6 10411 109 14 21 chr11 109882385 109882788 -40900765 - THE1A-int LTR MaLR -1185 395 5 2094 120 89 0 chr11 109882792 109883118 -40900435 - THE1A LTR MaLR 0 355 1 1668 153 79 59 chr11 109883118 109883380 -40900173 + MER7A DNA MER2_type 72 346 0 3441 142 39 12 chr11 109884994 109885635 -40897918 - L1MA6 LINE L1 0 6300 5643 354 340 28 52 chr11 109885880 109886092 -40897461 + MIR SINE MIR 14 220 -42 30 45 0 0 chr11 109886353 109886397 -40897156 + AT_rich Low_complexity Low_complexity 1 44 0 2053 125 3 7 chr11 109887523 109887828 -40895725 + AluSg SINE Alu 1 304 -6 775 43 0 0 chr11 109887921 109888013 -40895540 - L1PA7 LINE L1 -528 5644 5553 3631 57 8 4 chr11 109888013 109888486 -40895067 + L1PA7 LINE L1 5663 6140 -14 192 77 0 0 chr11 109889351 109889377 -40894176 + (A)n Simple_repeat Simple_repeat 1 26 0 5781 191 98 21 chr11 109889388 109890833 -40892720 - L1MA5A LINE L1 -804 5342 3788 4658 165 42 7 chr11 109890835 109891732 -40891821 + L1MA5A LINE L1 5369 6297 0 320 175 16 0 chr11 109893309 109893372 -40890181 - L1MA5A LINE L1 -4 6293 6230 1341 277 54 62 chr11 109894479 109895072 -40888481 - MLT1E LTR MaLR -3 590 3 519 224 0 40 chr11 109895321 109895446 -40888107 + MER46C DNA MER2_type 217 336 -2 2536 212 59 12 chr11 109897360 109897954 -40885599 - LTR26E LTR ERV1 0 622 1 215 247 14 0 chr11 109898250 109898323 -40885230 + (CATA)n Simple_repeat Simple_repeat 3 76 0 230 293 0 0 chr11 109898457 109898532 -40885021 + L1MC4 LINE L1 6613 6687 -1355 198 246 0 0 chr11 109898559 109898620 -40884933 + (TG)n Simple_repeat Simple_repeat 2 62 0 195 139 0 0 chr11 109899593 109899629 -40883924 + (A)n Simple_repeat Simple_repeat 1 36 0 25 0 0 0 chr11 109900082 109900107 -40883446 + AT_rich Low_complexity Low_complexity 1 25 0 420 320 143 0 chr11 109900554 109900785 -40882768 - L2 LINE L2 -1 3312 3049 1988 129 0 43 chr11 109901124 109901450 -40882103 + AluSq SINE Alu 1 312 -1 268 250 90 10 chr11 109901553 109901653 -40881900 + MLT1K LTR MaLR 182 289 -299 2179 183 7 22 chr11 109901996 109902407 -40881146 - MLT2D LTR ERVL 0 414 10 896 256 11 14 chr11 109902451 109902732 -40880821 + L1ME1 LINE L1 4818 5097 -1049 245 294 59 47 chr11 109902727 109902897 -40880656 + L1ME1 LINE L1 5849 6020 -146 * 710 188 0 13 chr11 109902897 109903051 -40880502 + L1MA10 LINE L1 6180 6331 -3 817 199 51 0 chr11 109903268 109903444 -40880109 - Tigger1 DNA MER2_type -1 2417 2233 210 71 0 0 chr11 109903444 109903472 -40880081 + (CA)n Simple_repeat Simple_repeat 1 28 0 187 286 0 48 chr11 109905200 109905263 -40878290 - L2 LINE L2 -832 2482 2423 29 28 0 0 chr11 109906164 109906200 -40877353 + AT_rich Low_complexity Low_complexity 1 36 0 25 51 0 0 chr11 109907966 109908005 -40875548 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr11 109909636 109909664 -40873889 + AT_rich Low_complexity Low_complexity 1 28 0 242 149 0 0 chr11 109909924 109909971 -40873582 - L1MC4 LINE L1 -1344 6698 6652 464 367 71 9 chr11 109910341 109910551 -40873002 + MIR SINE MIR 28 250 -12 463 282 24 47 chr11 109911171 109911341 -40872212 - MIR SINE MIR 0 262 97 11472 22 1 0 chr11 109913370 109915620 -40867933 + L1PA2 LINE L1 3898 6152 -3 5100 155 4 45 chr11 109915795 109917515 -40866038 - L1PA6 LINE L1 -11 6143 4399 4170 210 19 7 chr11 109917516 109918460 -40865093 - L1PA6 LINE L1 -2467 3679 2725 1767 166 59 3 chr11 109918561 109918917 -40864636 - L1MA4 LINE L1 -13 6287 5912 2015 44 4 20 chr11 109918986 109919238 -40864315 - AluY SINE Alu -9 302 55 492 229 68 0 chr11 109919679 109919797 -40863756 - MLT1H LTR MaLR -344 205 80 532 299 218 13 chr11 109919858 109920243 -40863310 - L2 LINE L2 -2063 1251 788 2141 102 3 0 chr11 109920923 109921217 -40862336 + AluSg1 SINE Alu 1 295 -14 1682 124 25 7 chr11 109921981 109922256 -40861297 - L1MA3 LINE L1 -8 6297 6018 1481 69 35 0 chr11 109922704 109922907 -40860646 + AluYb8 SINE Alu 100 309 -9 186 204 0 45 chr11 109922980 109923024 -40860529 - MIR SINE MIR -11 251 210 * 204 216 0 0 chr11 109923021 109923058 -40860495 - L2 LINE L2 -91 3222 3186 1520 175 98 0 chr11 109923533 109923859 -40859694 - L1MA9 LINE L1 -6 6306 5949 269 219 14 0 chr11 109923880 109923953 -40859600 + CT-rich Low_complexity Low_complexity 1 74 0 1971 192 87 2 chr11 109923983 109924395 -40859158 - MER74C LTR ERVL -9 451 5 378 91 0 0 chr11 109925001 109925056 -40858497 + (CA)n Simple_repeat Simple_repeat 2 56 0 1854 175 96 14 chr11 109925974 109926329 -40857224 + MLT1B LTR MaLR 3 386 -4 303 28 0 0 chr11 109926492 109926528 -40857025 + (TG)n Simple_repeat Simple_repeat 2 37 0 24 32 0 0 chr11 109927067 109927098 -40856455 + AT_rich Low_complexity Low_complexity 1 31 0 350 344 115 0 chr11 109928408 109928565 -40854988 - MER91A DNA MER1_type -1 195 21 283 308 90 15 chr11 109931291 109931424 -40852129 + MIR SINE MIR 34 176 -86 207 0 0 0 chr11 109932191 109932214 -40851339 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 1548 166 6 66 chr11 109932293 109932612 -40850941 + AluJb SINE Alu 3 302 -10 7354 189 31 20 chr11 109933986 109934304 -40849249 - L1 LINE L1 -1031 5115 4802 1780 136 29 58 chr11 109934304 109934650 -40848903 + MER1B DNA MER1_type 2 337 0 7354 189 31 20 chr11 109934650 109935333 -40848220 - L1 LINE L1 -1344 4802 4128 2260 71 3 26 chr11 109935333 109935643 -40847910 - AluY SINE Alu -8 303 1 7354 189 31 20 chr11 109935643 109936254 -40847299 - L1 LINE L1 -2018 4128 3481 2230 241 10 57 chr11 109936254 109936835 -40846718 - MLT2B3 LTR ERVL 0 554 1 7354 189 31 20 chr11 109936835 109936892 -40846661 - L1 LINE L1 -2665 3481 3426 842 132 17 80 chr11 109936911 109937123 -40846430 + Tigger4(Zombi) DNA MER2_type 2389 2730 -1 551 239 70 7 chr11 109937197 109937339 -40846214 + MIR SINE MIR 102 252 -10 26 74 0 0 chr11 109937350 109937404 -40846149 + AT_rich Low_complexity Low_complexity 1 54 0 1942 159 0 0 chr11 109938930 109939219 -40844334 + AluSq SINE Alu 5 293 -20 27 62 0 0 chr11 109939341 109939389 -40844164 + AT_rich Low_complexity Low_complexity 1 48 0 1010 192 43 118 chr11 109939612 109940003 -40843550 + MLT1A1 LTR MaLR 2 363 -2 2510 60 0 0 chr11 109940991 109941293 -40842260 - AluY SINE Alu -9 302 1 260 183 0 73 chr11 109941523 109941563 -40841990 + A-rich Low_complexity Low_complexity 1 34 -42 1934 152 3 0 chr11 109941563 109941859 -40841694 - AluSx SINE Alu -15 297 1 260 183 0 73 chr11 109941859 109941900 -40841653 + A-rich Low_complexity Low_complexity 34 76 0 5011 186 60 6 chr11 109942463 109943564 -40839989 - L1MC1 LINE L1 -2 6331 5176 232 240 0 0 chr11 109944894 109944944 -40838609 - MLT1C LTR MaLR -5 385 336 * 973 268 39 7 chr11 109944942 109945222 -40838331 - MLT1C LTR MaLR -90 377 89 421 212 102 15 chr11 109945219 109945356 -40838197 - MLT1C LTR MaLR -230 237 89 * 704 203 123 28 chr11 109945353 109945565 -40837988 - MLT1C LTR MaLR -230 237 6 516 285 91 36 chr11 109945585 109945806 -40837747 + MIR SINE MIR 30 262 0 189 319 19 88 chr11 109946534 109946694 -40836859 - L2 LINE L2 -225 3047 2899 473 299 56 0 chr11 109946931 109947075 -40836478 - MIR SINE MIR -56 206 55 318 233 0 0 chr11 109947560 109947646 -40835907 + GA-rich Low_complexity Low_complexity 2 87 0 436 204 97 0 chr11 109948286 109948399 -40835154 + L1MB7 LINE L1 6052 6175 -9 7607 21 0 0 chr11 109949138 109950561 -40832992 - L1PA3 LINE L1 0 6155 4731 309 275 50 8 chr11 109950648 109950768 -40832785 + Charlie2 DNA MER1_type 4 128 -2734 1126 239 150 12 chr11 109951329 109952042 -40831511 + Charlie2 DNA MER1_type 1966 2862 0 614 198 138 67 chr11 109952172 109952283 -40831270 - MER33 DNA MER1_type -2265 320 218 1929 122 4 4 chr11 109952283 109952561 -40830992 - AluSp SINE Alu -8 305 28 614 198 138 67 chr11 109952561 109952747 -40830806 - MER33 DNA MER1_type -2367 218 2 210 231 19 0 chr11 109954144 109954196 -40829357 + L2 LINE L2 3219 3271 -1 222 191 16 32 chr11 109954983 109955046 -40828507 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 983 221 37 5 chr11 109955811 109956028 -40827525 + MER58A DNA MER1_type 1 224 0 2148 288 97 24 chr11 109956139 109957451 -40826102 - L1MC4 LINE L1 -95 7713 6414 1261 169 95 8 chr11 109957460 109957703 -40825850 + AluSx SINE Alu 35 298 -14 311 290 196 35 chr11 109957981 109958460 -40825093 - L1MC4a LINE L1 -1500 6308 5753 594 152 30 8 chr11 109958470 109958602 -40824951 - L1 LINE L1 -1643 4503 4369 * 1563 220 48 8 chr11 109958601 109958973 -40824580 + L1MA9 LINE L1 4559 4945 -1201 1926 205 32 46 chr11 109959052 109959725 -40823828 + L1MA9 LINE L1 5596 6203 -109 503 263 45 34 chr11 109960849 109961028 -40822525 - L1ME3A LINE L1 -16 6154 5974 22 35 0 0 chr11 109962721 109962750 -40820803 + AT_rich Low_complexity Low_complexity 1 29 0 236 267 200 0 chr11 109963965 109964070 -40819483 - L2 LINE L2 -2 3311 3186 448 288 24 47 chr11 109967408 109967578 -40815975 - MIR SINE MIR 0 262 97 12400 26 5 0 chr11 109969607 109971853 -40811700 + L1PA2 LINE L1 3898 6152 -3 5272 86 17 0 chr11 109972028 109972668 -40810885 - L1PA6 LINE L1 -11 6143 5428 2087 112 0 62 chr11 109972668 109972991 -40810562 - AluY SINE Alu -8 303 1 5272 86 17 0 chr11 109972991 109973386 -40810167 - L1PA6 LINE L1 -726 5428 5041 9289 102 6 9 chr11 109973386 109974758 -40808795 + L1PA6 LINE L1 3655 5022 -1124 331 23 0 0 chr11 109974989 109975033 -40808520 - L1PA3 LINE L1 -1 6154 6111 31 82 0 0 chr11 109975249 109975322 -40808231 + AT_rich Low_complexity Low_complexity 1 73 0 473 305 124 6 chr11 109977080 109977257 -40806296 - MIR SINE MIR -13 249 52 2300 129 5 39 chr11 109977641 109978051 -40805502 - L1PA16 LINE L1 -2 6867 6472 13731 226 54 23 chr11 109978056 109980410 -40803143 - L1PA15 LINE L1 -13 6803 4523 357 86 0 0 chr11 109980410 109980468 -40803085 + (TG)n Simple_repeat Simple_repeat 2 59 0 13731 226 54 23 chr11 109980468 109980937 -40802616 - L1PA15 LINE L1 -2293 4523 4070 2333 65 7 0 chr11 109980937 109981230 -40802323 - AluY SINE Alu -16 295 1 13731 226 54 23 chr11 109981230 109984990 -40798563 - L1PA15 LINE L1 -2746 4070 1 13352 201 68 75 chr11 109984994 109985834 -40797719 - L1PA16 LINE L1 -381 6488 5644 2040 132 9 23 chr11 109985834 109986182 -40797371 - L1PA13 LINE L1 -11 6152 5810 13352 201 68 75 chr11 109986182 109991837 -40791716 - L1PA16 LINE L1 -1225 5644 9 31 26 0 0 chr11 109992027 109992065 -40791488 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr11 109992437 109992468 -40791085 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr11 109992569 109992598 -40790955 + AT_rich Low_complexity Low_complexity 1 29 0 241 118 39 0 chr11 109992698 109992749 -40790804 + (TA)n Simple_repeat Simple_repeat 2 54 0 280 293 41 49 chr11 109993132 109993255 -40790298 - L2 LINE L2 -943 2371 2250 2025 118 0 33 chr11 109994398 109994703 -40788850 + AluSg SINE Alu 1 295 -15 234 260 55 0 chr11 109995172 109995245 -40788308 + L1ME LINE L1 5624 5700 -421 897 188 7 0 chr11 109995400 109995549 -40788004 - AluSg/x SINE Alu -26 286 137 24 32 0 0 chr11 109995552 109995583 -40787970 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr11 109998872 109998893 -40784660 + AT_rich Low_complexity Low_complexity 1 21 0 247 151 66 28 chr11 109999295 109999401 -40784152 + (TTATA)n Simple_repeat Simple_repeat 4 113 0 337 353 22 0 chr11 109999824 109999960 -40783593 - L2 LINE L2 -1951 1363 1225 672 345 9 0 chr11 110000333 110000565 -40782988 - MIR SINE MIR 0 262 29 254 311 123 0 chr11 110000916 110001022 -40782531 + L2 LINE L2 3191 3309 -4 216 0 0 0 chr11 110001359 110001383 -40782170 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1967 320 134 24 chr11 110001489 110002623 -40780930 - L2 LINE L2 -1127 2187 929 1494 178 42 60 chr11 110002650 110003032 -40780521 - THE1C LTR MaLR 0 375 1 359 314 90 40 chr11 110003648 110003947 -40779606 + L2 LINE L2 823 1136 -2178 300 317 96 24 chr11 110004143 110004392 -40779161 + L2 LINE L2 2154 2420 -894 360 361 54 75 chr11 110004633 110005057 -40778496 + L2 LINE L2 2807 3221 -51 198 91 0 0 chr11 110005083 110005116 -40778437 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 192 77 0 0 chr11 110005467 110005493 -40778060 + (T)n Simple_repeat Simple_repeat 1 26 0 24 32 0 0 chr11 110006004 110006035 -40777518 + AT_rich Low_complexity Low_complexity 1 31 0 1539 201 7 3 chr11 110006130 110006423 -40777130 - AluJb SINE Alu -18 294 1 227 260 14 14 chr11 110007075 110007148 -40776405 + CT-rich Low_complexity Low_complexity 3 75 0 1065 93 0 0 chr11 110007150 110007301 -40776252 + (TCCCC)n Simple_repeat Simple_repeat 3 153 0 21 0 0 0 chr11 110007329 110007350 -40776203 + AT_rich Low_complexity Low_complexity 1 21 0 1521 231 29 0 chr11 110007728 110008079 -40775474 - MER67D LTR ERV1 0 514 154 362 303 117 26 chr11 110008199 110008430 -40775123 + L1ME LINE L1 5521 5772 -349 352 355 66 0 chr11 110008553 110008719 -40774834 - MIR SINE MIR -22 240 64 317 231 33 22 chr11 110009698 110009789 -40773764 - MER5A DNA MER1_type -89 100 9 313 319 112 5 chr11 110010199 110010387 -40773166 + L1MC/D LINE L1 5622 5829 -1979 487 261 141 139 chr11 110010677 110011153 -40772400 + MLT1F1 LTR MaLR 1 502 -65 278 297 52 19 chr11 110011899 110011925 -40771628 - L1ME LINE L1 -277 5885 5860 478 266 182 27 chr11 110011925 110012413 -40771140 - L1ME1 LINE L1 -310 5856 5305 454 298 83 17 chr11 110012439 110012741 -40770812 - L1ME1 LINE L1 -887 5259 4938 264 196 18 0 chr11 110013096 110013152 -40770401 - MLT1J1 LTR MaLR -387 59 3 321 269 101 52 chr11 110013505 110013697 -40769856 - L1MEc LINE L1 -788 1788 1522 197 412 0 18 chr11 110014558 110014672 -40768881 - L2 LINE L2 -296 2976 2865 195 69 0 0 chr11 110015029 110015058 -40768495 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1777 166 0 3 chr11 110015063 110015346 -40768207 - AluSx SINE Alu -30 282 1 905 202 16 5 chr11 110016234 110016422 -40767131 - MSTD LTR MaLR 0 396 207 392 263 20 0 chr11 110016446 110016545 -40767008 - MSTD LTR MaLR -326 102 2 7994 137 33 2 chr11 110019043 110020291 -40763262 - HSMAR1 DNA Mariner 0 1287 1 1862 205 3 3 chr11 110021271 110021637 -40761916 + MER47A DNA MER2_type 1 366 0 288 301 98 42 chr11 110021802 110021945 -40761608 + MER20B DNA MER1_type 1 151 -632 234 0 0 0 chr11 110024765 110024791 -40758762 + (TG)n Simple_repeat Simple_repeat 1 26 0 229 282 0 47 chr11 110025072 110025157 -40758396 - MIR3 SINE MIR -5 203 123 377 300 100 0 chr11 110025587 110025727 -40757826 + L1MC5 LINE L1 7270 7423 -538 203 373 69 32 chr11 110026149 110026527 -40757026 + L2 LINE L2 1945 2336 -978 698 301 53 4 chr11 110027310 110027556 -40755997 + MER20B DNA MER1_type 327 584 -199 673 243 68 0 chr11 110027582 110027730 -40755823 + AluJb SINE Alu 137 294 -18 969 262 77 37 chr11 110028323 110028728 -40754825 - LTR52 LTR ERVL 0 421 1 3563 97 19 59 chr11 110029099 110029346 -40754207 - MER41A LTR ERV1 0 554 299 6100 33 1 0 chr11 110029346 110030070 -40753483 - L1PA5 LINE L1 0 6154 5430 3563 97 19 59 chr11 110030070 110030397 -40753156 - MER41A LTR ERV1 -255 299 3 391 237 84 15 chr11 110030749 110030880 -40752673 - MLT1J2 LTR MaLR -310 140 1 180 0 0 0 chr11 110030887 110030907 -40752646 + (A)n Simple_repeat Simple_repeat 1 20 0 180 337 22 22 chr11 110031383 110031472 -40752081 + L3 LINE CR1 1428 1516 -61 21 0 0 0 chr11 110031606 110031627 -40751926 + AT_rich Low_complexity Low_complexity 1 21 0 1646 256 76 28 chr11 110031660 110032199 -40751354 - MLT1F1 LTR MaLR -2 565 1 22 0 0 0 chr11 110032611 110032633 -40750920 + AT_rich Low_complexity Low_complexity 1 22 0 578 322 33 33 chr11 110033127 110033525 -40750028 + HAL1b LINE L1 212 609 -739 243 213 9 19 chr11 110034779 110034887 -40748666 + GA-rich Low_complexity Low_complexity 2 108 0 219 69 0 0 chr11 110035126 110035155 -40748398 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 1759 142 14 30 chr11 110035155 110035451 -40748102 - AluSq SINE Alu -20 293 3 339 327 38 25 chr11 110035468 110035627 -40747926 + MIR SINE MIR 100 260 -2 202 374 153 5 chr11 110035622 110035825 -40747728 - MIR SINE MIR -2 260 28 * 1734 151 38 0 chr11 110036207 110036498 -40747055 + AluSx SINE Alu 1 302 -10 995 194 33 9 chr11 110036856 110037067 -40746486 + MER20 DNA MER1_type 1 216 -3 21 0 0 0 chr11 110037844 110037865 -40745688 + AT_rich Low_complexity Low_complexity 1 21 0 2744 10 0 0 chr11 110038625 110038931 -40744622 - AluYa5 SINE Alu -5 306 1 288 0 0 0 chr11 110039389 110039421 -40744132 + (CA)n Simple_repeat Simple_repeat 2 33 0 1176 140 0 0 chr11 110039464 110039643 -40743910 + AluSg/x SINE Alu 130 308 -4 2150 92 7 0 chr11 110041190 110041494 -40742059 + AluY SINE Alu 1 306 -5 29 78 0 0 chr11 110041672 110041736 -40741817 + AT_rich Low_complexity Low_complexity 1 64 0 23 0 0 0 chr11 110042469 110042492 -40741061 + AT_rich Low_complexity Low_complexity 1 23 0 226 188 0 21 chr11 110042601 110042649 -40740904 + (TA)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chr11 110042899 110042921 -40740632 + AT_rich Low_complexity Low_complexity 1 22 0 247 253 89 0 chr11 110042957 110043036 -40740517 - MIR SINE MIR -13 249 164 22 0 0 0 chr11 110044406 110044428 -40739125 + AT_rich Low_complexity Low_complexity 1 22 0 620 214 8 0 chr11 110045619 110045736 -40737817 - FLAM_C SINE Alu -15 118 1 252 173 25 12 chr11 110046599 110046669 -40736884 + (TA)n Simple_repeat Simple_repeat 2 75 -8 1891 100 78 4 chr11 110046669 110046939 -40736614 - AluSp SINE Alu -23 290 1 252 173 25 12 chr11 110046939 110046949 -40736604 + (TA)n Simple_repeat Simple_repeat 75 83 0 463 336 51 39 chr11 110046964 110047220 -40736333 - MIR SINE MIR -2 260 2 190 250 50 121 chr11 110047711 110047851 -40735702 - L2 LINE L2 -753 2561 2432 1454 216 24 0 chr11 110048286 110048582 -40734971 + AluJo SINE Alu 1 303 -9 579 220 0 0 chr11 110050217 110050385 -40733168 + CT-rich Low_complexity Low_complexity 1 168 0 478 315 32 30 chr11 110052117 110052359 -40731194 - MIR SINE MIR 0 262 21 4966 184 40 9 chr11 110052615 110054214 -40729339 - L1PA16 LINE L1 0 6166 4505 2306 92 0 7 chr11 110054214 110054520 -40729033 - AluY SINE Alu -7 304 1 4966 184 40 9 chr11 110054520 110054623 -40728930 - L1PA16 LINE L1 -1661 4505 4407 38 75 0 0 chr11 110055846 110055926 -40727627 + AT_rich Low_complexity Low_complexity 1 80 0 21 36 0 0 chr11 110056284 110056312 -40727241 + AT_rich Low_complexity Low_complexity 1 28 0 238 329 84 19 chr11 110057776 110057931 -40725622 + L2 LINE L2 2898 3062 -251 202 339 0 0 chr11 110058291 110058350 -40725203 - L2 LINE L2 -1 3271 3213 29 84 0 0 chr11 110058655 110058726 -40724827 + AT_rich Low_complexity Low_complexity 1 71 0 23 33 0 0 chr11 110058744 110058774 -40724779 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr11 110059218 110059241 -40724312 + AT_rich Low_complexity Low_complexity 1 23 0 221 339 118 0 chr11 110059628 110059755 -40723798 - MIR SINE MIR -14 248 107 230 260 20 0 chr11 110060861 110060911 -40722642 - L2 LINE L2 -12 3301 3251 1504 239 43 47 chr11 110060927 110061433 -40722120 - MLT1D LTR MaLR 0 505 2 2131 116 7 0 chr11 110061514 110061817 -40721736 + AluSp SINE Alu 1 305 -8 512 340 98 5 chr11 110061903 110062118 -40721435 - MIR SINE MIR -6 256 22 21 0 0 0 chr11 110062962 110062983 -40720570 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 110063962 110063983 -40719570 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr11 110065490 110065519 -40718034 + AT_rich Low_complexity Low_complexity 1 29 0 4388 169 38 15 chr11 110066872 110067797 -40715756 + L1PB4 LINE L1 5213 6155 -1 1521 233 106 75 chr11 110067797 110068639 -40714914 - L1MC5 LINE L1 -432 7529 6662 247 255 130 57 chr11 110070280 110070441 -40713112 - MIR SINE MIR -57 205 34 227 304 0 0 chr11 110070468 110070524 -40713029 + MIR SINE MIR 74 129 -133 371 380 37 11 chr11 110071670 110071857 -40711696 - MIR3 SINE MIR -1 207 16 2165 66 4 0 chr11 110072167 110072441 -40711112 + AluSc SINE Alu 13 287 -22 25 0 0 0 chr11 110072441 110072466 -40711087 + AT_rich Low_complexity Low_complexity 1 25 0 2152 108 0 16 chr11 110072502 110072817 -40710736 - AluSx SINE Alu -2 310 1 252 287 96 11 chr11 110073368 110073462 -40710091 - MIR SINE MIR -148 114 13 22 0 0 0 chr11 110074473 110074495 -40709058 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 110075213 110075234 -40708319 + AT_rich Low_complexity Low_complexity 1 21 0 6173 107 10 11 chr11 110076146 110077077 -40706476 - L1MA2 LINE L1 -1 6303 5374 180 0 0 0 chr11 110077177 110077197 -40706356 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 280 294 76 28 chr11 110078062 110078273 -40705280 + L1ME2 LINE L1 1572 1792 -4929 1938 149 0 0 chr11 110078274 110078569 -40704984 + AluSx SINE Alu 1 295 -17 1656 197 3 0 chr11 110078582 110078891 -40704662 + AluJb SINE Alu 3 312 0 398 297 117 21 chr11 110078904 110079143 -40704410 + L1ME2 LINE L1 1738 1999 -4541 413 317 114 25 chr11 110079316 110079597 -40703956 + L1ME2 LINE L1 3658 3963 -2577 337 287 143 8 chr11 110079668 110079926 -40703627 + L1ME2 LINE L1 5398 5690 -850 346 324 97 19 chr11 110079946 110080162 -40703391 + L1ME2 LINE L1 5706 5938 -622 299 308 31 40 chr11 110080169 110080393 -40703160 + L1ME2 LINE L1 6055 6276 -282 203 325 113 0 chr11 110080954 110081034 -40702519 + MIR SINE MIR 3 91 -171 2041 162 40 44 chr11 110081036 110081591 -40701962 - MLT2A2 LTR ERVL 0 554 1 380 295 101 0 chr11 110081591 110081740 -40701813 + MIR SINE MIR 89 252 -10 188 159 0 23 chr11 110082583 110082627 -40700926 + (CAT)n Simple_repeat Simple_repeat 3 45 0 561 15 0 0 chr11 110082870 110082936 -40700617 + (TG)n Simple_repeat Simple_repeat 2 67 0 2073 116 0 35 chr11 110083105 110083423 -40700130 - AluSq SINE Alu -4 309 3 26 0 0 0 chr11 110083486 110083512 -40700041 + AT_rich Low_complexity Low_complexity 1 26 0 651 151 93 58 chr11 110083739 110083944 -40699609 + L1MC3 LINE L1 6831 7042 -743 257 253 60 6 chr11 110083964 110084130 -40699423 + (TA)n Simple_repeat Simple_repeat 2 176 0 3168 188 72 12 chr11 110084133 110084882 -40698671 + L1MC3 LINE L1 6986 7779 -6 6864 64 2 3 chr11 110084909 110086548 -40697005 - L1PA7 LINE L1 0 6154 4512 244 391 0 0 chr11 110087049 110087136 -40696417 - L2 LINE L2 0 3313 3227 21 36 0 0 chr11 110087436 110087464 -40696089 + AT_rich Low_complexity Low_complexity 1 28 0 279 173 0 0 chr11 110088094 110088175 -40695378 + A-rich Low_complexity Low_complexity 1 81 0 744 303 64 56 chr11 110088992 110089712 -40693841 + L1M2 LINE L1 10 2069 -5512 226 324 0 0 chr11 110090540 110090614 -40692939 + L1 LINE L1 796 869 -5980 4367 206 26 0 chr11 110090614 110091563 -40691990 + L1PA15-16 LINE L1 2058 3030 -3819 1563 234 52 4 chr11 110091578 110092056 -40691497 + L1 LINE L1 3605 4105 -2743 329 203 108 0 chr11 110092107 110092181 -40691372 - L2 LINE L2 -5 3308 3227 5300 219 33 15 chr11 110092583 110093894 -40689659 - L1 LINE L1 -1774 4372 3039 620 205 0 8 chr11 110093901 110094028 -40689525 - L1P LINE L1 -2290 4559 4434 394 218 53 30 chr11 110094030 110094163 -40689390 - L1 LINE L1 -3118 3028 2893 798 238 12 1 chr11 110094169 110094408 -40689145 - L1PA15-16 LINE L1 -3826 3023 2783 595 301 93 30 chr11 110094525 110094761 -40688792 + MIR SINE MIR 11 261 -1 1881 164 3 10 chr11 110094867 110095171 -40688382 - AluSx SINE Alu -10 302 1 223 200 20 20 chr11 110095245 110095295 -40688258 - L2 LINE L2 0 3313 3264 220 271 51 0 chr11 110095271 110095330 -40688223 + L2 LINE L2 3251 3312 -1 * 432 326 144 9 chr11 110095428 110095643 -40687910 - MIR SINE MIR 0 262 19 403 126 72 117 chr11 110095791 110095902 -40687651 + MER58 DNA MER1_type 47 152 -2268 * 463 211 0 19 chr11 110095894 110095998 -40687555 + MER58 DNA MER1_type 2319 2420 0 21 36 0 0 chr11 110096235 110096263 -40687290 + AT_rich Low_complexity Low_complexity 1 28 0 1491 143 34 0 chr11 110097306 110097608 -40685945 + L1M1 LINE L1 5218 5528 -743 15427 106 15 5 chr11 110097702 110100828 -40682725 - L1PA7 LINE L1 -11 6143 3007 39 38 0 0 chr11 110101121 110101174 -40682379 + AT_rich Low_complexity Low_complexity 1 53 0 438 296 89 15 chr11 110101674 110101877 -40681676 - L2 LINE L2 -2123 1191 974 4432 37 2 2 chr11 110102802 110103341 -40680212 + L1PA4 LINE L1 5422 5960 -195 2699 32 9 3 chr11 110103441 110103780 -40679773 + L1PA4 LINE L1 5815 6155 0 25 0 0 0 chr11 110104993 110105018 -40678535 + AT_rich Low_complexity Low_complexity 1 25 0 233 122 54 40 chr11 110105937 110106011 -40677542 + GA-rich Low_complexity Low_complexity 2 76 0 306 290 0 0 chr11 110106269 110106338 -40677215 + L2 LINE L2 3241 3309 -4 1332 191 60 4 chr11 110107779 110108031 -40675522 + AluJo SINE Alu 7 272 -40 290 269 0 0 chr11 110108252 110108330 -40675223 + L1ME2 LINE L1 5900 5977 -187 27 29 0 0 chr11 110108827 110108861 -40674692 + AT_rich Low_complexity Low_complexity 1 34 0 1369 309 54 94 chr11 110111722 110112514 -40671039 + L2 LINE L2 750 1485 -1829 3092 132 28 8 chr11 110112514 110113007 -40670546 + LTR10B LTR ERV1 2 504 -1 1369 309 54 94 chr11 110113007 110113338 -40670215 + L2 LINE L2 1485 1828 -1486 701 231 118 9 chr11 110113395 110113607 -40669946 - L1ME1 LINE L1 -5 6161 5927 333 0 0 0 chr11 110113608 110113645 -40669908 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 597 211 9 0 chr11 110113646 110113760 -40669793 - AluJb SINE Alu -197 115 1 602 208 21 93 chr11 110113763 110113980 -40669573 - L1ME1 LINE L1 -237 5929 5733 1318 256 110 11 chr11 110113981 110114454 -40669099 + L2 LINE L2 1990 2509 -805 1200 210 13 4 chr11 110114459 110114692 -40668861 - MLT1A1 LTR MaLR -128 237 3 1208 234 44 10 chr11 110114694 110114989 -40668564 + MLT1A2 LTR MaLR 64 368 -6 903 296 47 58 chr11 110114995 110115566 -40667987 + L2 LINE L2 2755 3309 -4 2225 160 8 3 chr11 110115828 110116190 -40667363 - THE1B LTR MaLR 0 364 1 296 295 0 26 chr11 110116573 110116651 -40666902 + L2 LINE L2 3197 3272 0 22 0 0 0 chr11 110117077 110117099 -40666454 + AT_rich Low_complexity Low_complexity 1 22 0 2038 175 23 8 chr11 110117366 110117536 -40666017 - L1P4 LINE L1 -497 5669 5503 590 39 0 13 chr11 110117536 110117614 -40665939 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 1875 121 4 18 chr11 110117614 110117894 -40665659 - AluSc SINE Alu -32 277 2 2038 175 23 8 chr11 110117894 110118459 -40665094 - L1P4 LINE L1 -662 5504 4730 383 327 124 5 chr11 110119737 110119939 -40663614 + MIR SINE MIR 28 253 -9 300 378 87 10 chr11 110120989 110121185 -40662368 - MIR SINE MIR -51 211 1 2427 137 8 3 chr11 110121209 110121582 -40661971 - THE1C LTR MaLR 0 375 1 10021 114 16 60 chr11 110121582 110123235 -40660318 - THE1C-int LTR MaLR 0 1580 1 2429 136 5 5 chr11 110123235 110123610 -40659943 - THE1C LTR MaLR 0 375 1 919 250 77 169 chr11 110123616 110124399 -40659154 - MER50 LTR ERV1 -23 711 1 279 54 0 0 chr11 110124588 110124625 -40658928 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr11 110124745 110124766 -40658787 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 110124964 110124994 -40658559 + AT_rich Low_complexity Low_complexity 1 30 0 2125 102 0 3 chr11 110125990 110126296 -40657257 - AluSq SINE Alu 0 307 3 376 316 182 5 chr11 110126362 110126549 -40657004 + MIR SINE MIR 28 247 -15 180 0 0 0 chr11 110126554 110126574 -40656979 + (ATG)n Simple_repeat Simple_repeat 1 20 0 1428 229 78 39 chr11 110127147 110127507 -40656046 - L1ME1 LINE L1 -4 6162 5777 426 150 12 12 chr11 110127507 110127587 -40655966 - MADE1 DNA Mariner 0 80 1 1428 229 78 39 chr11 110127587 110127711 -40655842 - L1ME1 LINE L1 -389 5777 5659 1735 136 57 0 chr11 110128413 110128678 -40654875 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr11 110128678 110128705 -40654848 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 501 62 0 0 chr11 110128704 110128769 -40654784 + (TA)n Simple_repeat Simple_repeat 2 66 0 29 47 0 0 chr11 110128903 110128946 -40654607 + AT_rich Low_complexity Low_complexity 1 43 0 741 220 16 27 chr11 110129007 110129193 -40654360 - MER105 DNA DNA -2 202 19 324 288 119 19 chr11 110129193 110129353 -40654200 - L1ME4a LINE L1 -251 5870 5695 221 139 23 0 chr11 110129365 110129408 -40654145 + (TG)n Simple_repeat Simple_repeat 2 45 0 290 325 41 0 chr11 110129416 110129539 -40654014 - L1ME4a LINE L1 -444 5677 5550 217 298 106 66 chr11 110132488 110132686 -40650867 - MIR SINE MIR -4 258 53 32 43 0 0 chr11 110133421 110133467 -40650086 + AT_rich Low_complexity Low_complexity 1 46 0 869 222 13 53 chr11 110133805 110134030 -40649523 + MER20 DNA MER1_type 4 219 0 794 240 67 67 chr11 110134469 110134840 -40648713 - L2 LINE L2 -109 3204 2834 680 276 62 0 chr11 110135116 110135326 -40648227 + MIR SINE MIR 29 251 -11 7359 30 1 0 chr11 110136425 110137300 -40646253 + L1PA4 LINE L1 5269 6144 -11 257 250 0 0 chr11 110137453 110137517 -40646036 + (TA)n Simple_repeat Simple_repeat 2 65 0 2448 54 3 0 chr11 110138667 110138983 -40644570 - AluY SINE Alu 0 311 1 880 158 40 34 chr11 110139107 110139284 -40644269 - AluJo SINE Alu -23 289 112 303 254 74 59 chr11 110139457 110139601 -40643952 - MER5B DNA MER1_type -27 162 7 477 265 14 27 chr11 110140248 110140395 -40643158 - MARNA DNA Mariner -21 565 421 254 326 130 14 chr11 110140477 110140615 -40642938 - MIR SINE MIR -1 261 108 1157 155 5 10 chr11 110141590 110141790 -40641763 + MST-int LTR MaLR 1254 1452 -199 1455 163 137 24 chr11 110141848 110142185 -40641368 - THE1C LTR MaLR 0 375 1 4589 169 11 19 chr11 110142185 110143023 -40640530 - THE1C-int LTR MaLR 0 1580 750 637 283 50 0 chr11 110143200 110143380 -40640173 - MIR SINE MIR -2 260 72 22 56 0 0 chr11 110144813 110144849 -40638704 + AT_rich Low_complexity Low_complexity 1 36 0 270 0 0 0 chr11 110145135 110145165 -40638388 + (A)n Simple_repeat Simple_repeat 1 30 0 217 328 149 15 chr11 110145412 110145607 -40637946 + L2 LINE L2 1369 1589 -1725 264 192 27 14 chr11 110145797 110145870 -40637683 - L1M4 LINE L1 -3801 2345 2272 423 350 32 0 chr11 110146371 110146494 -40637059 + L2 LINE L2 3144 3270 -2 286 279 15 0 chr11 110146777 110146845 -40636708 + L2 LINE L2 3006 3074 -198 248 355 66 16 chr11 110147389 110147572 -40635981 + LTR16C LTR ERVL 300 491 0 22603 38 3 2 chr11 110148027 110150846 -40632707 + L1P LINE L1 2486 5308 -838 3753 158 20 57 chr11 110150946 110151682 -40631871 - MSTA-int LTR MaLR -869 711 3 1727 165 144 21 chr11 110151683 110152064 -40631489 - MSTA LTR MaLR 0 428 1 641 183 10 0 chr11 110152232 110152336 -40631217 + Tigger3(Golem) DNA MER2_type 1 105 -2924 3865 135 64 0 chr11 110152347 110153034 -40630519 + Tigger3(Golem) DNA MER2_type 2298 3028 -1 226 319 50 34 chr11 110153600 110153719 -40629834 - L2 LINE L2 -276 3037 2917 598 248 209 5 chr11 110154092 110154302 -40629251 + MIR SINE MIR 10 262 0 267 192 0 55 chr11 110155317 110155390 -40628163 - LTR66 LTR ERVL -162 448 380 * 2662 198 16 21 chr11 110155385 110155896 -40627657 - MLT2B3 LTR ERVL -46 508 1 2163 77 0 4 chr11 110156897 110157170 -40626383 - AluY SINE Alu -23 288 17 1765 161 10 29 chr11 110158232 110158543 -40625010 + AluSx SINE Alu 1 305 -7 277 93 80 13 chr11 110158579 110158654 -40624899 + A-rich Low_complexity Low_complexity 5 84 0 210 71 0 0 chr11 110158742 110158770 -40624783 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2391 216 141 54 chr11 110159077 110159924 -40623629 - LTR28 LTR ERV1 0 1020 1 1308 335 22 24 chr11 110160030 110160624 -40622929 + L2 LINE L2 633 1225 -2089 808 291 95 14 chr11 110160727 110161074 -40622479 + L2 LINE L2 1553 1927 -1387 315 329 95 15 chr11 110161417 110161554 -40621999 - L2 LINE L2 0 3272 3125 373 226 24 6 chr11 110161648 110161816 -40621737 + (TA)n Simple_repeat Simple_repeat 1 171 0 264 342 59 20 chr11 110162025 110162227 -40621326 + MIR SINE MIR 47 256 -6 24 32 0 0 chr11 110163614 110163645 -40619908 + AT_rich Low_complexity Low_complexity 1 31 0 513 328 131 41 chr11 110163690 110164102 -40619451 - L2 LINE L2 -1 3312 2864 27 49 0 0 chr11 110164418 110164459 -40619094 + AT_rich Low_complexity Low_complexity 1 41 0 366 264 0 64 chr11 110164613 110164738 -40618815 + MER94 DNA DNA 1 117 -17 6377 70 3 6 chr11 110164812 110166436 -40617117 - L1PA8 LINE L1 -19 6153 4537 1355 78 0 0 chr11 110166436 110166629 -40616924 + L1P LINE L1 2968 3160 -2986 3850 88 8 2 chr11 110166633 110167159 -40616394 + L1P LINE L1 3980 4508 -1638 276 30 0 0 chr11 110167765 110167798 -40615755 + (TG)n Simple_repeat Simple_repeat 2 34 0 325 289 124 36 chr11 110167814 110168008 -40615545 - MIR SINE MIR 0 262 52 23 0 0 0 chr11 110169257 110169280 -40614273 + AT_rich Low_complexity Low_complexity 1 23 0 21 82 0 0 chr11 110169337 110169386 -40614167 + AT_rich Low_complexity Low_complexity 1 49 0 406 233 233 0 chr11 110170923 110171039 -40612514 + MIR SINE MIR 97 239 -23 316 298 92 74 chr11 110171050 110171497 -40612056 + LTR16A1 LTR ERVL 3 457 0 2393 81 0 10 chr11 110172477 110172785 -40610768 + AluY SINE Alu 1 305 -6 245 367 156 0 chr11 110172991 110173119 -40610434 - MIR SINE MIR -16 246 99 249 401 42 0 chr11 110173135 110173283 -40610270 + MIR SINE MIR 7 124 -84 342 346 7 29 chr11 110173350 110173486 -40610067 - MIR SINE MIR -123 139 7 352 365 37 0 chr11 110174215 110174322 -40609231 - L2 LINE L2 0 3272 3162 757 245 0 0 chr11 110174812 110174975 -40608578 - FRAM SINE Alu -2 164 2 424 243 47 20 chr11 110175669 110175817 -40607736 + L1MEd LINE L1 27 178 -5941 1424 102 5 0 chr11 110176149 110176365 -40607188 - L1P LINE L1 -1021 5125 4909 548 68 0 0 chr11 110176365 110176439 -40607114 + L1PA7 LINE L1 6081 6154 0 50 59 0 0 chr11 110177384 110177469 -40606084 + AT_rich Low_complexity Low_complexity 1 85 0 34 0 0 0 chr11 110177642 110177676 -40605877 + AT_rich Low_complexity Low_complexity 1 34 0 2011 108 3 20 chr11 110177848 110178143 -40605410 - AluY SINE Alu -21 290 1 23 0 0 0 chr11 110178149 110178172 -40605381 + AT_rich Low_complexity Low_complexity 1 23 0 183 349 35 23 chr11 110178779 110178865 -40604688 + L2 LINE L2 3186 3272 0 186 209 0 0 chr11 110180138 110180181 -40603372 + (TATG)n Simple_repeat Simple_repeat 3 45 0 209 138 52 17 chr11 110180239 110180297 -40603256 + (TA)n Simple_repeat Simple_repeat 1 60 0 201 299 103 0 chr11 110180338 110180425 -40603128 - MIR SINE MIR -64 144 49 420 342 63 53 chr11 110180446 110180858 -40602695 - L2 LINE L2 -674 2640 2225 349 338 159 36 chr11 110181313 110181810 -40601743 + L2 LINE L2 1025 1582 -1732 211 344 52 0 chr11 110181851 110181947 -40601606 + L2 LINE L2 1902 2002 -1312 187 303 34 91 chr11 110182995 110183200 -40600353 - L2 LINE L2 -1081 2233 2045 2074 125 0 7 chr11 110183200 110183505 -40600048 + AluSx SINE Alu 1 303 -9 187 303 34 91 chr11 110183505 110183563 -40599990 - L2 LINE L2 -1269 2045 1985 327 25 0 0 chr11 110184252 110184292 -40599261 + (TG)n Simple_repeat Simple_repeat 2 41 0 1976 125 0 10 chr11 110185181 110185476 -40598077 - AluY SINE Alu -17 294 3 23 33 0 0 chr11 110185808 110185838 -40597715 + AT_rich Low_complexity Low_complexity 1 30 0 282 56 0 0 chr11 110185869 110185905 -40597648 + (CA)n Simple_repeat Simple_repeat 2 37 0 2290 75 0 0 chr11 110186599 110186922 -40596631 + AluY SINE Alu 1 323 0 267 140 123 0 chr11 110186922 110186979 -40596574 - MLT1K LTR MaLR -14 574 511 216 0 0 0 chr11 110187157 110187181 -40596372 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 249 300 50 0 chr11 110187247 110187327 -40596226 - MLT1K LTR MaLR -362 226 143 198 425 12 25 chr11 110187926 110188086 -40595467 - MER5A DNA MER1_type -6 183 26 383 308 19 0 chr11 110188721 110188828 -40594725 + MIR3 SINE MIR 63 171 -37 2001 157 15 6 chr11 110188834 110189166 -40594387 - MER1B DNA MER1_type -2 335 1 311 259 34 34 chr11 110189693 110189840 -40593713 - MER69 DNA AcHobo 0 2526 2380 201 401 21 14 chr11 110190550 110190692 -40592861 - MIR3 SINE MIR -21 187 45 21 36 0 0 chr11 110190732 110190760 -40592793 + AT_rich Low_complexity Low_complexity 1 28 0 203 357 116 14 chr11 110191288 110191565 -40591988 + L2 LINE L2 2184 2488 -826 1821 144 67 28 chr11 110192043 110192404 -40591149 - THE1C LTR MaLR 0 375 1 332 134 247 31 chr11 110192404 110192501 -40591052 - THE1C-int LTR MaLR 0 1580 1463 1934 39 0 0 chr11 110192504 110192762 -40590791 - L1P LINE L1 -2848 3298 3041 16808 36 0 0 chr11 110192762 110195602 -40587951 + L1PA3 LINE L1 3333 6173 0 5778 152 25 10 chr11 110195602 110196587 -40586966 - THE1C-int LTR MaLR -104 1476 477 1059 222 60 19 chr11 110196587 110196853 -40586700 - THE1C LTR MaLR -96 279 3 214 314 0 29 chr11 110197024 110197094 -40586459 + L2 LINE L2 3246 3313 0 271 367 27 7 chr11 110199700 110199847 -40583706 + L2 LINE L2 2904 3053 -219 369 323 99 59 chr11 110199974 110200467 -40583086 - LTR33 LTR ERVL -7 514 2 416 236 81 32 chr11 110200468 110200591 -40582962 + L2 LINE L2 3143 3271 -1 874 151 0 13 chr11 110200848 110201000 -40582553 - L1MB1 LINE L1 -14 6175 6026 13251 142 39 30 chr11 110201378 110203772 -40579781 - Tigger1 DNA MER2_type 0 2418 3 490 343 101 32 chr11 110204788 110205196 -40578357 + L3b LINE CR1 1102 1537 -46 353 244 167 18 chr11 110205645 110205813 -40577740 - LTR50 LTR ERVL -103 692 500 * 440 222 296 40 chr11 110205799 110206096 -40577457 - LTR50 LTR ERVL -399 396 24 2024 159 6 0 chr11 110208423 110208762 -40574791 + L1PB4 LINE L1 5816 6156 0 1062 76 0 0 chr11 110209869 110210001 -40573552 + AluSc SINE Alu 157 288 -21 26 0 0 0 chr11 110210001 110210027 -40573526 + AT_rich Low_complexity Low_complexity 1 26 0 563 198 12 78 chr11 110212763 110212930 -40570623 + MER104 DNA Tc2 22 177 -3 2225 225 62 41 chr11 110213555 110214794 -40568759 - L1ME1 LINE L1 -5 6230 4979 * 3442 188 60 1 chr11 110214780 110216049 -40567504 - L1MA6 LINE L1 -319 5981 4646 2341 144 17 0 chr11 110216043 110216453 -40567100 + L1 LINE L1 4194 4610 -1536 * 1907 262 28 0 chr11 110216460 110217041 -40566512 - L1ME1 LINE L1 -3222 2993 2397 1670 173 39 90 chr11 110217041 110217606 -40565947 - MLT2A2 LTR ERVL -8 546 1 714 220 134 19 chr11 110217623 110217891 -40565662 - L1ME1 LINE L1 -3992 2404 2106 1409 275 35 16 chr11 110217906 110218455 -40565098 - L1ME1 LINE L1 -4484 1912 1354 550 256 69 40 chr11 110218462 110218739 -40564814 - L1ME1 LINE L1 -5078 1318 1034 3606 185 10 6 chr11 110218747 110219449 -40564104 - L1MC1 LINE L1 0 6333 5629 5494 193 18 12 chr11 110218759 110219445 -40564108 - L1MC1 LINE L1 -11 6322 5641 2124 125 23 47 chr11 110219445 110219829 -40563724 + THE1C LTR MaLR 1 375 0 10039 123 10 33 chr11 110219831 110221446 -40562107 + THE1C-int LTR MaLR 3 1580 0 1905 159 32 19 chr11 110221446 110221816 -40561737 + THE1C LTR MaLR 1 375 0 5494 193 18 12 chr11 110221816 110222389 -40561164 - L1MC1 LINE L1 -691 5642 5053 2647 276 42 17 chr11 110222390 110223315 -40560238 - L1ME1 LINE L1 -5340 1056 109 298 346 44 25 chr11 110223713 110223872 -40559681 + MIR SINE MIR 41 202 -60 2398 47 7 3 chr11 110224713 110225009 -40558544 + AluY SINE Alu 1 297 -14 25 65 0 0 chr11 110225168 110225214 -40558339 + AT_rich Low_complexity Low_complexity 1 46 0 1369 193 19 19 chr11 110225517 110225786 -40557767 + AluJo SINE Alu 13 281 -31 239 274 95 0 chr11 110226124 110226208 -40557345 + MIR SINE MIR 100 191 -71 6968 53 29 0 chr11 110226620 110227476 -40556077 + MER11D LTR ERVK 17 897 0 27 29 0 0 chr11 110227910 110227944 -40555609 + AT_rich Low_complexity Low_complexity 1 34 0 269 357 105 20 chr11 110228898 110229192 -40554361 + L2 LINE L2 949 1267 -2047 364 304 74 34 chr11 110229564 110229712 -40553841 + MIR SINE MIR 96 249 -13 272 377 83 21 chr11 110229704 110229993 -40553560 + L2 LINE L2 2407 2713 -601 * 676 292 16 0 chr11 110230012 110230197 -40553356 + MER58A DNA MER1_type 37 224 0 43846 40 2 2 chr11 110230380 110236536 -40547017 - L1PA4 LINE L1 0 6155 3 228 318 15 0 chr11 110236806 110236872 -40546681 + L2 LINE L2 3247 3313 0 206 395 61 34 chr11 110238989 110239283 -40544270 + L2 LINE L2 2869 3170 -102 1213 111 19 48 chr11 110239303 110239510 -40544043 - L1PB4 LINE L1 -1 6155 5955 202 190 17 17 chr11 110239539 110239597 -40543956 + (TA)n Simple_repeat Simple_repeat 1 58 0 2619 172 25 30 chr11 110239597 110240226 -40543327 - L1PB4 LINE L1 -360 5796 5171 24 0 0 0 chr11 110241124 110241148 -40542405 + AT_rich Low_complexity Low_complexity 1 24 0 236 293 26 26 chr11 110241359 110241375 -40542178 + L1PB1 LINE L1 5903 5918 -233 831 29 20 0 chr11 110241375 110241477 -40542076 - L1PA3 LINE L1 -3 6152 6049 1144 48 0 0 chr11 110241477 110241622 -40541931 + L1PA3 LINE L1 5919 6063 -92 22 35 0 0 chr11 110242002 110242031 -40541522 + AT_rich Low_complexity Low_complexity 1 29 0 985 314 76 45 chr11 110242195 110243050 -40540503 + L1ME2 LINE L1 100 994 -5402 2564 219 23 29 chr11 110243050 110243264 -40540289 + MLT2B3 LTR ERVL 1 215 -339 2146 104 3 0 chr11 110243264 110243563 -40539990 + AluY SINE Alu 1 300 -11 2564 219 23 29 chr11 110243563 110243905 -40539648 + MLT2B3 LTR ERVL 215 554 0 985 314 76 45 chr11 110243905 110244103 -40539450 + L1ME2 LINE L1 994 1185 -5211 331 311 78 16 chr11 110244156 110244349 -40539204 + L1ME2 LINE L1 1210 1414 -4801 1065 246 49 81 chr11 110244351 110244994 -40538559 + L1ME2 LINE L1 1589 2233 -3982 7638 26 0 0 chr11 110244994 110246049 -40537504 + L1PA3 LINE L1 5098 6152 -3 1065 246 49 81 chr11 110246049 110246474 -40537079 + L1ME2 LINE L1 2233 2670 -3545 2118 246 65 53 chr11 110246492 110249538 -40534015 + L1ME2 LINE L1 2627 6128 -105 580 282 182 0 chr11 110249545 110249765 -40533788 - MLT1H LTR MaLR -289 260 1 207 0 0 0 chr11 110250442 110250465 -40533088 + (A)n Simple_repeat Simple_repeat 1 23 0 275 314 26 45 chr11 110250868 110251132 -40532421 - L1MCa LINE L1 -4550 1876 1477 478 294 34 108 chr11 110251161 110251579 -40531974 - L1MCa LINE L1 -4867 1549 1163 23 68 0 0 chr11 110252328 110252372 -40531181 + AT_rich Low_complexity Low_complexity 1 44 0 208 123 25 37 chr11 110252599 110252680 -40530873 + (TA)n Simple_repeat Simple_repeat 1 80 0 281 256 11 22 chr11 110252815 110252905 -40530648 - MIR SINE MIR -1 261 173 263 238 213 25 chr11 110252923 110253045 -40530508 - L2 LINE L2 0 3313 3169 * 395 263 60 15 chr11 110253043 110253176 -40530377 - MIR SINE MIR -114 148 10 371 267 228 15 chr11 110253269 110253471 -40530082 - MIR SINE MIR -6 256 12 314 225 98 58 chr11 110253977 110254150 -40529403 + L1ME LINE L1 5553 5732 -389 249 194 42 14 chr11 110254482 110254554 -40528999 + L1MC/D LINE L1 4795 4868 -1278 908 289 51 53 chr11 110254879 110255341 -40528212 + L1MC/D LINE L1 5261 5723 -2085 1908 132 13 23 chr11 110255341 110255645 -40527908 + AluSx SINE Alu 2 302 -10 908 289 51 53 chr11 110255645 110255747 -40527806 + L1MC/D LINE L1 5723 5824 -1984 27 62 0 0 chr11 110255771 110255819 -40527734 + AT_rich Low_complexity Low_complexity 1 48 0 2430 78 0 3 chr11 110256046 110256355 -40527198 - AluSq SINE Alu -5 308 1 664 294 51 5 chr11 110257139 110257353 -40526200 + MER58A DNA MER1_type 1 224 0 254 279 0 16 chr11 110259053 110259114 -40524439 + AluS SINE Alu 3 62 -241 758 229 44 16 chr11 110259137 110259320 -40524233 + AluJb SINE Alu 120 307 -5 370 287 134 38 chr11 110260866 110261075 -40522478 - MIR SINE MIR -6 256 28 233 324 103 35 chr11 110261538 110261683 -40521870 - MIR SINE MIR -59 203 49 21 36 0 0 chr11 110262397 110262425 -40521128 + AT_rich Low_complexity Low_complexity 1 28 0 255 191 0 0 chr11 110262706 110262769 -40520784 + (TG)n Simple_repeat Simple_repeat 2 64 0 297 283 116 52 chr11 110264295 110264468 -40519085 + MIR SINE MIR 76 259 -3 1483 210 16 19 chr11 110264556 110264865 -40518688 - AluJb SINE Alu -2 310 3 189 0 0 0 chr11 110268403 110268424 -40515129 + (A)n Simple_repeat Simple_repeat 1 21 0 1914 151 7 0 chr11 110268468 110268759 -40514794 - AluSx SINE Alu -19 293 1 24 53 0 0 chr11 110268848 110268886 -40514667 + AT_rich Low_complexity Low_complexity 1 38 0 39 74 0 0 chr11 110269053 110269134 -40514419 + AT_rich Low_complexity Low_complexity 1 81 0 25 0 0 0 chr11 110270521 110270546 -40513007 + AT_rich Low_complexity Low_complexity 1 25 0 2026 195 102 41 chr11 110270789 110271373 -40512180 - MER39 LTR ERV1 -31 676 1 22 0 0 0 chr11 110272081 110272103 -40511450 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 110272884 110272906 -40510647 + AT_rich Low_complexity Low_complexity 1 22 0 1435 169 23 73 chr11 110272952 110273254 -40510299 + AluJb SINE Alu 1 287 -25 268 316 0 0 chr11 110274104 110274183 -40509370 + MIR SINE MIR 174 252 -10 318 194 0 0 chr11 110274191 110274258 -40509295 + (ATGGTG)n Simple_repeat Simple_repeat 2 68 0 2105 151 11 19 chr11 110274261 110274639 -40508914 - THE1C LTR MaLR 0 375 1 218 248 86 119 chr11 110276292 110276502 -40507051 + L3b LINE CR1 1195 1397 -186 32 81 0 0 chr11 110276554 110276628 -40506925 + AT_rich Low_complexity Low_complexity 1 74 0 1452 201 0 33 chr11 110277705 110278004 -40505549 - AluJb SINE Alu -23 289 1 272 222 42 0 chr11 110278146 110278218 -40505335 + L1ME4a LINE L1 5967 6041 -80 2051 186 24 34 chr11 110278239 110278446 -40505107 - MSTB LTR MaLR -13 413 210 2172 120 0 3 chr11 110278446 110278745 -40504808 + AluSq SINE Alu 1 298 -15 2051 186 24 34 chr11 110278745 110278951 -40504602 - MSTB LTR MaLR -216 210 4 195 100 0 0 chr11 110280092 110280122 -40503431 + (TAGG)n Simple_repeat Simple_repeat 2 31 0 884 233 61 60 chr11 110280270 110280724 -40502829 - LTR48B LTR ERV1 -11 633 124 321 306 0 28 chr11 110280699 110280807 -40502746 - MER34 LTR ERV1 -437 105 1 * 203 314 110 47 chr11 110281055 110281246 -40502307 - MIR SINE MIR -56 206 4 38 22 0 0 chr11 110281597 110281642 -40501911 + AT_rich Low_complexity Low_complexity 1 45 0 31 26 0 0 chr11 110281698 110281736 -40501817 + AT_rich Low_complexity Low_complexity 1 38 0 227 308 0 0 chr11 110281912 110281990 -40501563 + L1MC4 LINE L1 6614 6691 -1351 616 296 131 17 chr11 110282293 110282952 -40500601 + L1M4 LINE L1 2994 3727 -2419 4478 212 29 91 chr11 110282953 110284516 -40499037 + L1 LINE L1 2395 3860 -2286 1156 133 0 0 chr11 110284512 110284692 -40498861 - L1PA10 LINE L1 -759 5387 5208 * 5307 107 23 3 chr11 110284692 110285465 -40498088 + L1PA10 LINE L1 5365 6153 -15 1269 195 15 0 chr11 110285479 110285741 -40497812 + L1P LINE L1 3851 4116 -2030 674 192 17 6 chr11 110285828 110286005 -40497548 + CT-rich Low_complexity Low_complexity 2 180 0 701 219 7 0 chr11 110286005 110286142 -40497411 - MLT1A1 LTR MaLR -56 309 172 604 363 57 29 chr11 110286288 110286832 -40496721 + L2 LINE L2 2612 3181 -132 2143 136 0 0 chr11 110286832 110287141 -40496412 - AluSg SINE Alu -1 309 1 604 363 57 29 chr11 110287141 110287274 -40496279 + L2 LINE L2 3181 3309 -4 1631 178 7 20 chr11 110288688 110288981 -40494572 - AluJo SINE Alu -23 289 1 188 331 40 46 chr11 110289150 110289301 -40494252 + MER5A DNA MER1_type 26 175 -14 23 0 0 0 chr11 110289521 110289544 -40494009 + AT_rich Low_complexity Low_complexity 1 23 0 725 184 6 0 chr11 110290071 110290234 -40493319 + GA-rich Low_complexity Low_complexity 1 164 0 790 273 6 0 chr11 110291444 110291616 -40491937 + MER45A DNA AcHobo 1 173 -5 431 362 17 0 chr11 110291623 110291800 -40491753 + MIR SINE MIR 64 243 -19 492 247 0 0 chr11 110292632 110292729 -40490824 - MIR3 SINE MIR -25 183 87 1074 285 89 17 chr11 110294043 110294522 -40489031 - MLT1H LTR MaLR -9 586 5 385 313 0 9 chr11 110294574 110294651 -40488902 - MIR SINE MIR -69 139 62 391 194 204 0 chr11 110294651 110294744 -40488809 - MER81 DNA DNA -2 112 1 385 313 0 9 chr11 110294744 110294778 -40488775 - MIR SINE MIR -146 62 29 5524 116 20 1 chr11 110296998 110297860 -40485693 - L1PB2 LINE L1 0 6151 5274 24 0 0 0 chr11 110298122 110298146 -40485407 + AT_rich Low_complexity Low_complexity 1 24 0 248 227 91 30 chr11 110298327 110298393 -40485160 - L3 LINE CR1 -27 1550 1481 203 322 0 0 chr11 110298397 110298456 -40485097 + MIR3 SINE MIR 98 156 -52 1908 136 49 0 chr11 110299509 110299795 -40483758 - AluSx SINE Alu -12 300 1 248 341 0 0 chr11 110299885 110299970 -40483583 - MIR SINE MIR -1 261 177 238 317 40 20 chr11 110300567 110300668 -40482885 - MIR SINE MIR -140 122 20 21 36 0 0 chr11 110302723 110302751 -40480802 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr11 110304123 110304162 -40479391 + AT_rich Low_complexity Low_complexity 1 39 0 1970 120 4 0 chr11 110304563 110304863 -40478690 + AluSg SINE Alu 3 303 0 1814 156 3 28 chr11 110305311 110305631 -40477922 + AluJb SINE Alu 1 312 0 1325 202 22 0 chr11 110307045 110307322 -40476231 - L1MB1 LINE L1 0 6168 5886 1108 266 67 23 chr11 110307414 110307805 -40475748 + MLT1I LTR MaLR 2 409 0 571 193 69 119 chr11 110308526 110308728 -40474825 + MER3 DNA MER1_type 7 198 -11 306 0 0 0 chr11 110308832 110308866 -40474687 + (A)n Simple_repeat Simple_repeat 1 34 0 326 209 17 0 chr11 110309507 110309574 -40473979 - FRAM/FAM SINE Alu -107 59 2 195 302 32 0 chr11 110309666 110309729 -40473824 + MER5A DNA MER1_type 26 90 -99 1085 178 14 10 chr11 110310400 110310608 -40472945 - MER3 DNA MER1_type 0 209 1 519 135 0 0 chr11 110311106 110311202 -40472351 + (A)n Simple_repeat Simple_repeat 1 96 0 21 36 0 0 chr11 110312164 110312192 -40471361 + AT_rich Low_complexity Low_complexity 1 28 0 199 385 26 0 chr11 110312391 110312469 -40471084 + L2 LINE L2 2959 3038 -234 384 281 41 8 chr11 110312476 110312597 -40470956 - MIR SINE MIR -6 256 132 261 83 0 0 chr11 110312803 110312839 -40470714 + (A)n Simple_repeat Simple_repeat 1 36 0 31 26 0 0 chr11 110313374 110313412 -40470141 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr11 110314752 110314777 -40468776 + AT_rich Low_complexity Low_complexity 1 25 0 247 281 135 31 chr11 110315153 110315249 -40468304 + MIR SINE MIR 150 255 -7 21 57 0 0 chr11 110316474 110316509 -40467044 + AT_rich Low_complexity Low_complexity 1 35 0 382 289 165 20 chr11 110317671 110318028 -40465525 - L1ME4a LINE L1 -205 5916 5508 28 29 0 0 chr11 110318519 110318554 -40464999 + AT_rich Low_complexity Low_complexity 1 35 0 1569 215 51 49 chr11 110318644 110319166 -40464387 - LTR29 LTR ERV1 0 653 102 397 278 61 0 chr11 110319248 110319363 -40464190 - MER34 LTR ERV1 -420 122 1 553 294 46 34 chr11 110319363 110319601 -40463952 - L2 LINE L2 -28 3285 3045 2136 193 50 66 chr11 110319710 110320228 -40463325 - MLT2B3 LTR ERVL -42 512 3 422 291 142 49 chr11 110320230 110320633 -40462920 - L2 LINE L2 -264 3049 2601 26 50 0 0 chr11 110321457 110321497 -40462056 + AT_rich Low_complexity Low_complexity 1 40 0 744 319 42 4 chr11 110321715 110321956 -40461597 - MIR SINE MIR 0 262 13 855 233 45 11 chr11 110322586 110322762 -40460791 - MER5A DNA MER1_type 0 189 8 3190 147 28 0 chr11 110322861 110323399 -40460154 - L1PA16 LINE L1 -5 6161 5609 3713 259 35 23 chr11 110323401 110324610 -40458943 - L1P LINE L1 -2904 3242 2014 1428 202 0 63 chr11 110324610 110324927 -40458626 - AluJb SINE Alu -15 297 1 3713 259 35 23 chr11 110324927 110325026 -40458527 - L1P LINE L1 -4132 2014 1918 181 410 49 16 chr11 110325187 110325309 -40458244 + L3b LINE CR1 1428 1553 -30 2070 136 0 13 chr11 110325332 110325649 -40457904 - AluSq SINE Alu 0 313 1 788 318 68 20 chr11 110325704 110326056 -40457497 + L2 LINE L2 2155 2523 -791 761 261 71 62 chr11 110326085 110326407 -40457146 + MLT1D LTR MaLR 7 331 -174 378 339 41 86 chr11 110326414 110326833 -40456720 + L2 LINE L2 2908 3307 -6 228 35 0 0 chr11 110327516 110327545 -40456008 + (TG)n Simple_repeat Simple_repeat 2 30 0 429 314 17 8 chr11 110327961 110328079 -40455474 - L2 LINE L2 0 3272 3154 733 312 107 39 chr11 110328789 110329228 -40454325 - L2 LINE L2 -577 2737 2269 283 298 105 53 chr11 110329909 110330080 -40453473 + MIR SINE MIR 75 254 -8 204 293 0 0 chr11 110330084 110330142 -40453411 + (TAG)n Simple_repeat Simple_repeat 1 58 0 23 0 0 0 chr11 110330712 110330735 -40452818 + AT_rich Low_complexity Low_complexity 1 23 0 363 267 217 12 chr11 110332035 110332196 -40451357 + MIR SINE MIR 57 250 -12 314 365 77 0 chr11 110332252 110332356 -40451197 + L2 LINE L2 3148 3259 -13 22 35 0 0 chr11 110332728 110332757 -40450796 + AT_rich Low_complexity Low_complexity 1 29 0 2143 128 0 0 chr11 110332865 110333163 -40450390 - AluY SINE Alu -13 298 1 21 82 0 0 chr11 110334255 110334304 -40449249 + AT_rich Low_complexity Low_complexity 1 49 0 248 364 0 11 chr11 110335058 110335146 -40448407 - L2 LINE L2 0 3272 3186 254 263 213 0 chr11 110335314 110335394 -40448159 + MIR SINE MIR 30 126 -82 268 334 134 37 chr11 110335509 110335943 -40447610 - L2 LINE L2 -579 2735 2260 635 342 34 22 chr11 110335979 110336248 -40447305 - L2 LINE L2 0 3313 3042 5092 300 164 19 chr11 110336253 110337270 -40446283 - L2 LINE L2 -407 2907 2039 1944 132 51 3 chr11 110337270 110337566 -40445987 + AluSx SINE Alu 1 310 -2 5092 300 164 19 chr11 110337566 110339066 -40444487 - L2 LINE L2 -1275 2039 25 234 338 0 0 chr11 110339309 110339377 -40444176 + L2 LINE L2 3205 3272 0 2787 154 29 72 chr11 110339486 110340001 -40443552 + MLT2B3 LTR ERVL 1 490 -64 249 108 0 0 chr11 110340001 110340038 -40443515 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 2787 154 29 72 chr11 110340038 110340101 -40443452 + MLT2B3 LTR ERVL 490 554 0 964 174 18 6 chr11 110340106 110340273 -40443280 + Tigger4(Zombi) DNA MER2_type 2 170 -2561 3365 126 21 18 chr11 110340277 110340839 -40442714 + Tigger4(Zombi) DNA MER2_type 2168 2731 0 1166 215 15 4 chr11 110341900 110342170 -40441383 - L1PA16 LINE L1 0 6166 5894 249 264 170 0 chr11 110342171 110342277 -40441276 + MER103 DNA DNA 9 132 -34 204 40 0 0 chr11 110342557 110342582 -40440971 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 376 317 56 7 chr11 110342770 110342912 -40440641 + MIR SINE MIR 70 218 -44 229 281 158 0 chr11 110343318 110343400 -40440153 - MIR SINE MIR -88 174 80 263 314 36 15 chr11 110343932 110344069 -40439484 + L1ME4a LINE L1 5969 6108 -13 248 338 192 20 chr11 110344608 110344951 -40438602 + L2 LINE L2 2564 2965 -349 24 0 0 0 chr11 110345645 110345669 -40437884 + AT_rich Low_complexity Low_complexity 1 24 0 208 247 99 111 chr11 110345879 110346041 -40437512 + MIR SINE MIR 31 190 -72 29 60 0 0 chr11 110347197 110347247 -40436306 + AT_rich Low_complexity Low_complexity 1 50 0 2324 86 3 10 chr11 110347300 110347613 -40435940 + AluY SINE Alu 1 311 0 655 229 48 48 chr11 110347714 110347941 -40435612 - MER114 LTR ERV -421 227 1 1324 251 33 11 chr11 110348477 110348843 -40434710 + MLT1A2 LTR MaLR 1 374 0 407 219 125 0 chr11 110348981 110349077 -40434476 - L2 LINE L2 -17 3296 3189 324 341 16 16 chr11 110349976 110350102 -40433451 - MIR3 SINE MIR -81 127 2 365 228 33 22 chr11 110350511 110350603 -40432950 - MIR SINE MIR -115 147 55 22 0 0 0 chr11 110351479 110351501 -40432052 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 110351661 110351685 -40431868 + AT_rich Low_complexity Low_complexity 1 24 0 15722 99 34 26 chr11 110351699 110354809 -40428744 - L1PA3 LINE L1 -2 6153 3025 320 273 88 19 chr11 110355149 110355365 -40428188 + L1ME3A LINE L1 4496 4726 -1420 309 257 52 15 chr11 110355547 110355683 -40427870 + L1ME3A LINE L1 4935 5075 -1071 831 159 114 0 chr11 110355935 110356111 -40427442 + L1MA9 LINE L1 5998 6193 -119 428 174 54 0 chr11 110356113 110356205 -40427348 + L1MA9 LINE L1 6216 6312 0 1432 255 97 32 chr11 110356219 110356835 -40426718 + L1ME3A LINE L1 5318 5973 -197 3881 64 19 6 chr11 110357618 110358149 -40425404 - L1PA7 LINE L1 -1 6153 5616 341 264 60 136 chr11 110358416 110358681 -40424872 - MIR SINE MIR 0 262 18 387 0 0 0 chr11 110359520 110359563 -40423990 + (CA)n Simple_repeat Simple_repeat 2 44 0 509 269 199 5 chr11 110359760 110359961 -40423592 + MIR SINE MIR 20 259 -3 27 29 0 0 chr11 110360102 110360136 -40423417 + AT_rich Low_complexity Low_complexity 1 34 0 23 78 0 0 chr11 110360952 110361003 -40422550 + AT_rich Low_complexity Low_complexity 1 51 0 553 264 57 0 chr11 110361537 110361677 -40421876 - MIR SINE MIR -29 233 86 226 303 186 37 chr11 110362444 110362632 -40420921 + MIR SINE MIR 2 217 -45 21 71 0 0 chr11 110362633 110362675 -40420878 + AT_rich Low_complexity Low_complexity 1 42 0 249 269 0 0 chr11 110363031 110363083 -40420470 + L2 LINE L2 3262 3313 0 368 341 111 10 chr11 110363207 110363415 -40420138 + L3 LINE CR1 1338 1566 -11 439 327 77 23 chr11 110363429 110363649 -40419904 - MIR SINE MIR 0 262 31 476 317 36 12 chr11 110364550 110364717 -40418836 - MIR3 SINE MIR -6 202 32 366 366 42 57 chr11 110365107 110365438 -40418115 - L2 LINE L2 0 3313 2988 11118 137 21 41 chr11 110365471 110367442 -40416111 + Tigger1 DNA MER2_type 483 2415 -3 349 380 56 19 chr11 110367531 110367744 -40415809 + L2 LINE L2 2858 3078 -235 218 406 108 8 chr11 110370460 110370709 -40412844 - L2 LINE L2 -469 2845 2572 239 353 24 12 chr11 110372200 110372285 -40411268 - L2 LINE L2 -906 2408 2323 377 196 105 60 chr11 110372954 110373087 -40410466 + MIR SINE MIR 114 252 -10 439 357 52 0 chr11 110373329 110373542 -40410011 + MIR SINE MIR 37 260 -2 2011 125 11 0 chr11 110373717 110374004 -40409549 - AluSq SINE Alu -18 295 6 234 0 0 0 chr11 110374541 110374567 -40408986 + (TG)n Simple_repeat Simple_repeat 2 27 0 311 344 29 70 chr11 110374936 110375180 -40408373 + L2 LINE L2 3016 3249 -23 1697 162 64 22 chr11 110376633 110376991 -40406562 - L1MA3 LINE L1 0 6305 5933 321 234 0 0 chr11 110377166 110377243 -40406310 - MER116 DNA Mariner 0 80 4 912 280 13 7 chr11 110377548 110377852 -40405701 + L1MD2 LINE L1 3440 3745 -2401 * 3379 222 62 29 chr11 110377847 110379434 -40404119 + L1MD2 LINE L1 4680 6338 -21 2800 235 94 35 chr11 110379455 110379896 -40403657 + L1ME1 LINE L1 4384 4797 -1369 1084 216 105 47 chr11 110379896 110380239 -40403314 - MLT1A1 LTR MaLR 0 365 3 2800 235 94 35 chr11 110380239 110381479 -40402074 + L1ME1 LINE L1 4797 6161 -5 240 331 102 20 chr11 110381495 110381787 -40401766 + L2 LINE L2 2746 3058 -214 228 299 41 41 chr11 110381978 110382075 -40401478 - MIR SINE MIR -151 111 15 974 236 169 14 chr11 110382144 110382440 -40401113 + MLT1E2 LTR MaLR 284 625 -1 1909 150 50 8 chr11 110382512 110382872 -40400681 + THE1C LTR MaLR 1 375 0 210 296 86 12 chr11 110382889 110382970 -40400583 + MIR3 SINE MIR 97 183 -25 563 240 187 0 chr11 110383029 110383200 -40400353 + LTR33 LTR ERVL 8 210 -311 1182 225 39 53 chr11 110383276 110383632 -40399921 + MLT1B LTR MaLR 2 352 -38 1751 154 3 51 chr11 110383767 110384079 -40399474 + AluJb SINE Alu 1 297 -15 1339 189 36 3 chr11 110384718 110385020 -40398533 - L1PA16 LINE L1 -1628 4518 4207 5209 172 28 25 chr11 110385023 110385851 -40397702 + L1PA16 LINE L1 4531 5375 -791 1447 179 34 10 chr11 110385851 110386147 -40397406 + AluJb SINE Alu 1 303 -9 5209 172 28 25 chr11 110386147 110386933 -40396620 + L1PA16 LINE L1 5375 6157 -9 26 50 0 0 chr11 110386933 110386973 -40396580 + AT_rich Low_complexity Low_complexity 1 40 0 27 73 0 0 chr11 110389669 110389724 -40393829 + AT_rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr11 110391678 110391706 -40391847 + AT_rich Low_complexity Low_complexity 1 28 0 387 359 1 14 chr11 110392303 110392463 -40391090 + MIR3 SINE MIR 20 178 -30 23 33 0 0 chr11 110394302 110394332 -40389221 + AT_rich Low_complexity Low_complexity 1 30 0 189 277 139 53 chr11 110394786 110395085 -40388468 - L2 LINE L2 -274 2998 2664 190 171 146 0 chr11 110396034 110396075 -40387478 - L2 LINE L2 -12 3301 3255 259 335 152 12 chr11 110396268 110396432 -40387121 - L3 LINE CR1 -14 1563 1377 396 307 31 61 chr11 110399442 110399670 -40383883 + LTR16A LTR ERVL 16 236 -214 215 163 20 0 chr11 110400204 110400253 -40383300 + (TA)n Simple_repeat Simple_repeat 2 51 0 291 54 0 0 chr11 110401485 110401522 -40382031 + (CA)n Simple_repeat Simple_repeat 1 37 0 24 53 0 0 chr11 110401816 110401854 -40381699 + AT_rich Low_complexity Low_complexity 1 38 0 1424 268 57 11 chr11 110402437 110402904 -40380649 - MLT1H LTR MaLR -18 531 2 592 285 217 8 chr11 110402997 110403260 -40380293 - MLT1H LTR MaLR -5 544 227 718 173 0 0 chr11 110404307 110404434 -40379119 + FLAM_C SINE Alu 13 139 -4 477 315 52 30 chr11 110406318 110406686 -40376867 - L1ME4a LINE L1 -172 5949 5574 459 321 62 6 chr11 110406759 110406921 -40376632 + MIR3 SINE MIR 31 201 -7 22 80 0 0 chr11 110408337 110408387 -40375166 + AT_rich Low_complexity Low_complexity 1 50 0 293 211 32 105 chr11 110408477 110408572 -40374981 - MER87 LTR ERV1 -453 88 1 233 333 22 22 chr11 110408631 110408811 -40374742 - MLT1H1-int LTR MaLR -889 482 303 314 292 29 15 chr11 110408821 110408958 -40374595 - MLT1H1-int LTR MaLR -1227 144 6 540 300 26 16 chr11 110408970 110409160 -40374393 - MLT1H1 LTR MaLR -7 583 392 730 339 47 8 chr11 110409351 110409608 -40373945 - MLT1H1 LTR MaLR -288 267 1 193 304 97 0 chr11 110411124 110411243 -40372310 + MIR3 SINE MIR 37 165 -43 654 276 92 0 chr11 110412684 110412847 -40370706 + MER45A DNA AcHobo 1 178 0 2308 87 0 7 chr11 110414186 110414485 -40369068 + AluY SINE Alu 1 297 -14 225 246 0 53 chr11 110414826 110414883 -40368670 - L2 LINE L2 -9 3304 3251 276 250 58 58 chr11 110414914 110415018 -40368535 - MIR SINE MIR -141 121 18 345 186 0 0 chr11 110415847 110415906 -40367647 - L2 LINE L2 0 3313 3255 345 186 0 0 chr11 110416371 110416430 -40367123 - L2 LINE L2 0 3313 3255 341 149 15 0 chr11 110420185 110420252 -40363301 + CT-rich Low_complexity Low_complexity 1 68 0 345 261 39 52 chr11 110420252 110420405 -40363148 - L1ME3A LINE L1 -1 6169 6019 256 301 39 10 chr11 110423358 110423461 -40360092 - L2 LINE L2 0 3272 3167 601 266 23 34 chr11 110423603 110423780 -40359773 - MER45A DNA AcHobo -2 176 2 215 186 86 43 chr11 110425757 110425827 -40357726 - L2 LINE L2 -5 3308 3236 389 342 96 49 chr11 110426471 110426588 -40356965 - L2 LINE L2 -1017 2297 2187 2094 125 10 0 chr11 110426588 110426891 -40356662 + AluSx SINE Alu 1 306 -6 389 342 96 49 chr11 110426891 110427223 -40356330 - L2 LINE L2 -1127 2187 1827 190 330 28 57 chr11 110427272 110427378 -40356175 + MIR SINE MIR 29 131 -131 241 280 53 0 chr11 110427380 110427455 -40356098 - L2 LINE L2 -4 3268 3190 416 255 31 81 chr11 110427569 110427730 -40355823 - MIR SINE MIR -4 258 106 246 272 11 22 chr11 110427954 110428046 -40355507 + GA-rich Low_complexity Low_complexity 1 91 0 344 100 0 0 chr11 110428463 110428513 -40355040 - L1PA7 LINE L1 -1023 5123 5074 5522 64 22 0 chr11 110428513 110429356 -40354197 + L1PA7 LINE L1 5136 5992 -162 1083 203 162 3 chr11 110430879 110431175 -40352378 - MER2 DNA MER2_type 0 344 2 182 245 20 20 chr11 110431231 110431280 -40352273 - L2 LINE L2 -42 3271 3223 352 357 54 8 chr11 110432038 110432167 -40351386 + L2 LINE L2 3133 3267 -5 225 94 0 0 chr11 110432792 110432824 -40350729 + (A)n Simple_repeat Simple_repeat 1 32 0 855 133 27 0 chr11 110433314 110433464 -40350089 + LTR22A LTR ERVK 1 154 -304 2725 115 124 7 chr11 110433464 110433907 -40349646 - HERVK22 LTR ERVK -6342 495 1 2439 88 16 0 chr11 110433907 110434226 -40349327 - LTR22A LTR ERVK 0 458 135 3324 108 2 4 chr11 110434226 110434707 -40348846 - HERVK22 LTR ERVK -5125 1712 1233 644 124 9 0 chr11 110434707 110434812 -40348741 - LTR22A LTR ERVK -352 106 1 2547 62 0 0 chr11 110434906 110435214 -40348339 + AluY SINE Alu 2 309 -2 294 286 83 0 chr11 110436324 110436408 -40347145 + MIR SINE MIR 51 141 -67 228 200 0 0 chr11 110436408 110436458 -40347095 + A-rich Low_complexity Low_complexity 1 50 0 541 226 6 6 chr11 110436603 110436771 -40346782 + GA-rich Low_complexity Low_complexity 3 170 0 21 0 0 0 chr11 110437462 110437483 -40346070 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr11 110437603 110437635 -40345918 + AT_rich Low_complexity Low_complexity 1 32 0 237 340 10 10 chr11 110439664 110439761 -40343792 - MLT1I LTR MaLR -217 192 96 419 270 244 20 chr11 110440200 110440610 -40342943 + L2 LINE L2 2743 3248 -65 2000 121 100 9 chr11 110440612 110440951 -40342602 - MSTA LTR MaLR -58 370 1 27 29 0 0 chr11 110442051 110442085 -40341468 + AT_rich Low_complexity Low_complexity 1 34 0 243 321 25 0 chr11 110442547 110442628 -40340925 - MIR SINE MIR -85 123 41 448 336 78 30 chr11 110443179 110443616 -40339937 - MLT1L LTR MaLR -8 607 131 243 250 0 70 chr11 110443584 110443684 -40339869 - MLT1L LTR MaLR -410 205 113 * 211 310 144 43 chr11 110443952 110444139 -40339414 + MIR SINE MIR 57 262 0 301 295 41 41 chr11 110444383 110444505 -40339048 - MIR SINE MIR -50 212 91 302 347 74 40 chr11 110444580 110444756 -40338797 - MER5A DNA MER1_type -6 183 2 305 301 75 71 chr11 110445044 110445326 -40338227 - L2 LINE L2 -33 3280 2998 28 29 0 0 chr11 110445936 110445971 -40337582 + AT_rich Low_complexity Low_complexity 1 35 0 1765 159 13 10 chr11 110446429 110446737 -40336816 + AluJo SINE Alu 1 309 -3 217 282 127 0 chr11 110447212 110447283 -40336270 + MIR3 SINE MIR 126 205 -3 21 0 0 0 chr11 110448442 110448463 -40335090 + AT_rich Low_complexity Low_complexity 1 21 0 237 290 0 16 chr11 110448568 110448630 -40334923 - L2 LINE L2 -2 3311 3251 364 250 54 48 chr11 110448666 110448834 -40334719 - L1ME LINE L1 -304 5817 5649 22 0 0 0 chr11 110448919 110448941 -40334612 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 110449019 110449040 -40334513 + AT_rich Low_complexity Low_complexity 1 21 0 213 277 46 0 chr11 110449053 110449118 -40334435 + L2 LINE L2 3205 3272 0 376 192 281 20 chr11 110449298 110449444 -40334109 - MLT1G LTR MaLR -6 561 378 6487 136 17 4 chr11 110449454 110450848 -40332705 - L1MA5A LINE L1 -3 6294 4885 807 290 98 33 chr11 110450849 110451184 -40332369 - MLT1G LTR MaLR -193 397 41 191 332 17 13 chr11 110451409 110451492 -40332061 + MIR SINE MIR 27 107 -101 25 0 0 0 chr11 110451559 110451584 -40331969 + AT_rich Low_complexity Low_complexity 1 25 0 288 280 80 32 chr11 110451589 110451714 -40331839 + MIR SINE MIR 105 235 -27 826 257 45 57 chr11 110454313 110454644 -40328909 - L1MD2 LINE L1 -24 6335 6009 31487 112 8 53 chr11 110454673 110461113 -40322440 + L1PA7 LINE L1 12 6154 0 237 132 0 0 chr11 110462220 110462258 -40321295 + (TA)n Simple_repeat Simple_repeat 1 38 0 5888 110 9 5 chr11 110462389 110463246 -40320307 - L1PA8 LINE L1 -8 6164 5304 540 224 0 17 chr11 110464280 110464396 -40319157 + FLAM_C SINE Alu 11 124 -19 601 253 31 92 chr11 110465024 110465253 -40318300 - L2 LINE L2 -2 3311 3097 619 244 152 14 chr11 110465276 110465413 -40318140 - MLT1A2 LTR MaLR 0 378 261 252 0 0 0 chr11 110465413 110465441 -40318112 + (CA)n Simple_repeat Simple_repeat 1 28 0 619 244 152 14 chr11 110465441 110465631 -40317922 - MLT1A2 LTR MaLR -117 261 1 2885 273 93 46 chr11 110465632 110466909 -40316644 - L2 LINE L2 -232 3081 1749 1458 275 227 14 chr11 110466911 110467686 -40315867 - L2 LINE L2 -776 2538 1599 883 315 49 26 chr11 110467745 110468091 -40315462 - L2 LINE L2 -2953 361 8 26 50 0 0 chr11 110469529 110469569 -40313984 + AT_rich Low_complexity Low_complexity 1 40 0 195 276 35 0 chr11 110470341 110470399 -40313154 + L2 LINE L2 3221 3280 -33 236 93 47 0 chr11 110470647 110470690 -40312863 + GA-rich Low_complexity Low_complexity 2 46 0 4735 223 64 28 chr11 110470712 110471916 -40311637 + L1P4 LINE L1 1 1247 -5540 4497 159 1 10 chr11 110471913 110473059 -40310494 + L1P4 LINE L1 5172 6307 -507 * 840 20 0 0 chr11 110473059 110473155 -40310398 + L1PA13 LINE L1 6046 6144 -19 1743 170 40 0 chr11 110474417 110474717 -40308836 + AluSx SINE Alu 1 312 0 2349 119 30 22 chr11 110475184 110475545 -40308008 + THE1B LTR MaLR 1 364 0 507 290 140 31 chr11 110475574 110475860 -40307693 - MLT1L LTR MaLR -130 485 169 251 309 0 15 chr11 110475809 110475877 -40307676 - LTR67 LTR ERVL -390 167 101 * 585 321 49 40 chr11 110476171 110476798 -40306755 - L1MEd LINE L1 -5041 1078 446 548 167 79 9 chr11 110477280 110477318 -40306235 - MSTB2 LTR MaLR 0 457 423 1040 115 40 55 chr11 110477318 110477518 -40306035 + L1PA13 LINE L1 5966 6162 -1 548 167 79 9 chr11 110477518 110477593 -40305960 - MSTB2 LTR MaLR -34 423 336 308 286 68 27 chr11 110478938 110479085 -40304468 + MIR SINE MIR 98 250 -12 216 97 0 0 chr11 110479235 110479266 -40304287 + (TC)n Simple_repeat Simple_repeat 1 31 0 500 184 0 0 chr11 110479266 110479353 -40304200 - FLAM_A SINE Alu -14 128 42 26 50 0 0 chr11 110482281 110482321 -40301232 + AT_rich Low_complexity Low_complexity 1 40 0 207 100 0 0 chr11 110482639 110482669 -40300884 + (A)n Simple_repeat Simple_repeat 1 30 0 20181 160 59 11 chr11 110482776 110489768 -40293785 - L1MA2 LINE L1 0 7723 351 2281 98 0 0 chr11 110489768 110490087 -40293466 + AluSx SINE Alu 1 319 0 20181 160 59 11 chr11 110490087 110490445 -40293108 - L1MA2 LINE L1 -7372 351 12 208 274 0 0 chr11 110490921 110490972 -40292581 + (TA)n Simple_repeat Simple_repeat 2 52 0 481 301 51 31 chr11 110491021 110491217 -40292336 + MIR SINE MIR 47 246 -16 42580 33 23 2 chr11 110491851 110497924 -40285629 + L1PA2 LINE L1 5 6209 0 25 0 0 0 chr11 110498139 110498164 -40285389 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr11 110499651 110499686 -40283867 + AT_rich Low_complexity Low_complexity 1 35 0 289 324 116 8 chr11 110499703 110499853 -40283700 - MIR SINE MIR -76 186 22 22 0 0 0 chr11 110500071 110500093 -40283460 + AT_rich Low_complexity Low_complexity 1 22 0 34 42 0 0 chr11 110500733 110500781 -40282772 + AT_rich Low_complexity Low_complexity 1 48 0 207 194 0 0 chr11 110502013 110502049 -40281504 + (TATG)n Simple_repeat Simple_repeat 3 38 0 21 0 0 0 chr11 110502093 110502114 -40281439 + AT_rich Low_complexity Low_complexity 1 21 0 335 218 51 0 chr11 110503963 110504041 -40279512 - MIR SINE MIR -66 196 115 282 263 0 0 chr11 110504611 110504668 -40278885 - L2 LINE L2 -8 3305 3249 24 0 0 0 chr11 110505654 110505678 -40277875 + AT_rich Low_complexity Low_complexity 1 24 0 373 338 81 6 chr11 110505986 110506146 -40277407 - MIR SINE MIR -71 191 20 218 255 57 85 chr11 110506161 110506267 -40277286 - MIR SINE MIR -55 207 105 464 223 6 139 chr11 110507013 110507179 -40276374 - MIR SINE MIR -117 145 2 346 314 66 7 chr11 110507818 110507955 -40275598 + MIR3 SINE MIR 47 191 -17 783 188 12 44 chr11 110507994 110508154 -40275399 + FRAM SINE Alu 1 152 -24 677 249 110 10 chr11 110510822 110511031 -40272522 + MIR SINE MIR 31 260 -2 233 330 130 0 chr11 110511255 110511355 -40272198 + MIR3 SINE MIR 44 156 -52 226 318 197 22 chr11 110511442 110511665 -40271888 - Charlie8 DNA MER1_type -2152 265 4 1244 113 10 10 chr11 110511944 110512138 -40271415 + MER30 DNA MER1_type 1 194 -36 26 0 0 0 chr11 110513867 110513893 -40269660 + AT_rich Low_complexity Low_complexity 1 26 0 415 245 24 130 chr11 110513920 110514173 -40269380 - MIR SINE MIR -35 227 2 241 263 95 42 chr11 110515707 110515802 -40267751 + L2 LINE L2 3173 3272 0 1095 270 110 26 chr11 110515838 110516257 -40267296 + LTR16A1 LTR ERVL 2 455 -2 196 287 59 40 chr11 110516277 110516378 -40267175 + MER5A DNA MER1_type 83 185 -4 1960 302 107 37 chr11 110516562 110517943 -40265610 - L2 LINE L2 0 3313 1831 188 264 11 110 chr11 110518951 110519042 -40264511 - L2 LINE L2 -78 3235 3154 1733 299 75 57 chr11 110519157 110520069 -40263484 - L2 LINE L2 -493 2821 1894 358 295 107 8 chr11 110521010 110521132 -40262421 - L2 LINE L2 -2 3311 3178 368 286 126 25 chr11 110522379 110522498 -40261055 - L2 LINE L2 0 3272 3142 2526 65 0 0 chr11 110524058 110524366 -40259187 + AluY SINE Alu 1 308 -3 534 232 26 74 chr11 110525048 110525238 -40258315 - L1ME3A LINE L1 -27 6143 5963 2318 113 0 0 chr11 110525244 110525554 -40257999 - AluSx SINE Alu -2 310 1 9298 160 37 15 chr11 110525569 110528185 -40255368 - L1MA8 LINE L1 -13 6278 3608 682 238 91 30 chr11 110528186 110528331 -40255222 - L1ME3A LINE L1 -192 5978 5843 2524 51 0 0 chr11 110528331 110528624 -40254929 - AluY SINE Alu -18 293 1 682 238 91 30 chr11 110528624 110528743 -40254810 - L1ME3A LINE L1 -327 5843 5698 339 196 184 24 chr11 110528737 110528905 -40254648 - L1ME3A LINE L1 -1567 4579 4385 * 396 291 40 5 chr11 110528953 110529152 -40254401 - L1MC5 LINE L1 -49 7912 7707 249 317 98 23 chr11 110529313 110529611 -40253942 - L1ME LINE L1 -5636 434 111 227 286 79 36 chr11 110529672 110530001 -40253552 - L1ME3A LINE L1 -2805 3341 2999 2512 124 38 22 chr11 110530159 110530611 -40252942 - LTR56 LTR ERV1 0 439 5 22 0 0 0 chr11 110530772 110530794 -40252759 + AT_rich Low_complexity Low_complexity 1 22 0 354 354 65 9 chr11 110532484 110532713 -40250840 + L2 LINE L2 2428 2669 -645 444 309 122 42 chr11 110532772 110533239 -40250314 - L2 LINE L2 -131 3182 2677 357 289 91 104 chr11 110533376 110533847 -40249706 + L2 LINE L2 2804 3268 -4 1537 162 3 63 chr11 110534171 110534474 -40249079 + AluJo SINE Alu 1 285 -27 2011 141 131 8 chr11 110534481 110534856 -40248697 - MSTA LTR MaLR -7 421 1 180 111 0 0 chr11 110534864 110534891 -40248662 + (A)n Simple_repeat Simple_repeat 1 27 0 1101 161 5 0 chr11 110534894 110535087 -40248466 + L1PBa LINE L1 2 195 -6668 12710 169 69 8 chr11 110535092 110539611 -40243942 + L1PBa LINE L1 636 5431 -1431 32956 66 10 6 chr11 110539891 110540569 -40242984 - L1PA11 LINE L1 0 6174 5500 1912 148 0 13 chr11 110540569 110540867 -40242686 - AluSx SINE Alu -2 310 17 32956 66 10 6 chr11 110540867 110545320 -40238233 - L1PA11 LINE L1 -674 5500 1027 5981 156 19 16 chr11 110545458 110547229 -40236324 + L1PB1 LINE L1 4381 6151 0 854 187 6 18 chr11 110547291 110547462 -40236091 + L1MC1 LINE L1 6148 6316 -17 2158 118 14 0 chr11 110547782 110548071 -40235482 + AluSx SINE Alu 1 293 -19 28 0 0 0 chr11 110548165 110548193 -40235360 + AT_rich Low_complexity Low_complexity 1 28 0 186 395 60 0 chr11 110548335 110548469 -40235084 - MIR SINE MIR -87 175 34 250 281 8 33 chr11 110548582 110548703 -40234850 + L1ME LINE L1 5688 5805 -316 905 226 71 68 chr11 110550858 110551181 -40232372 - LTR28 LTR ERV1 0 1020 697 403 235 333 0 chr11 110551179 110551311 -40232242 - LTR28 LTR ERV1 -142 878 703 * 2217 198 314 7 chr11 110551315 110551987 -40231566 - LTR28 LTR ERV1 -142 878 1 43 20 0 0 chr11 110554192 110554242 -40229311 + AT_rich Low_complexity Low_complexity 1 50 0 291 28 0 0 chr11 110554440 110554476 -40229077 + (CA)n Simple_repeat Simple_repeat 1 36 0 226 286 98 53 chr11 110554863 110554996 -40228557 + L2 LINE L2 3056 3194 -78 1696 184 29 0 chr11 110556733 110557080 -40226473 + L1MA4 LINE L1 5939 6295 -5 1182 187 46 110 chr11 110557369 110557759 -40225794 - MLT1A1 LTR MaLR 0 365 1 25 65 0 0 chr11 110558446 110558492 -40225061 + AT_rich Low_complexity Low_complexity 1 46 0 2375 120 28 14 chr11 110559060 110559418 -40224135 - THE1B LTR MaLR -1 363 1 275 238 12 25 chr11 110559698 110559778 -40223775 + L1MC5 LINE L1 7835 7913 -48 379 353 17 63 chr11 110561050 110561288 -40222265 + L2 LINE L2 3032 3258 -14 263 283 27 0 chr11 110562335 110562418 -40221135 + MIR SINE MIR 66 140 -68 23 0 0 0 chr11 110562564 110562587 -40220966 + AT_rich Low_complexity Low_complexity 1 23 0 229 333 126 30 chr11 110562724 110562994 -40220559 + L2 LINE L2 2804 3099 -173 184 329 79 26 chr11 110563042 110563118 -40220435 + L2 LINE L2 3180 3259 -13 557 301 118 18 chr11 110563802 110564031 -40219522 - MIR SINE MIR 0 262 11 180 77 0 0 chr11 110564116 110564142 -40219411 + (A)n Simple_repeat Simple_repeat 1 26 0 288 283 223 28 chr11 110564220 110564471 -40219082 + L3 LINE CR1 511 810 -767 1707 62 17 25 chr11 110564472 110564713 -40218840 - L1PA13 LINE L1 -4 6159 5921 888 230 118 34 chr11 110564744 110565066 -40218487 + L1MC4 LINE L1 7692 8040 -2 207 340 202 5 chr11 110565073 110565261 -40218292 + L3 LINE CR1 850 1074 -503 298 269 135 10 chr11 110565764 110565868 -40217685 - MIR SINE MIR -76 132 16 555 314 26 16 chr11 110566516 110566710 -40216843 + MIR SINE MIR 66 261 -1 5690 156 84 6 chr11 110567063 110568204 -40215349 - Tigger3b DNA MER2_type -1 1230 1 22 0 0 0 chr11 110568271 110568293 -40215260 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr11 110569403 110569431 -40214122 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 110570121 110570145 -40213408 + AT_rich Low_complexity Low_complexity 1 24 0 229 286 0 0 chr11 110571852 110571901 -40211652 + L2 LINE L2 3205 3253 -19 383 293 90 0 chr11 110572036 110572169 -40211384 + L1MC4a LINE L1 5543 5687 -2121 335 245 180 59 chr11 110572170 110572493 -40211060 + L1MC4a LINE L1 5868 6229 -1579 13871 193 45 32 chr11 110572536 110574272 -40209281 - L1PA16 LINE L1 -5 6864 5152 318 50 0 0 chr11 110574272 110574312 -40209241 + (TG)n Simple_repeat Simple_repeat 2 41 0 13871 193 45 32 chr11 110574312 110574583 -40208970 - L1PA16 LINE L1 -1717 5152 4886 466 27 122 40 chr11 110574583 110574657 -40208896 + MADE1 DNA Mariner 1 80 0 13871 193 45 32 chr11 110574657 110576074 -40207479 - L1PA16 LINE L1 -1983 4886 3489 2424 75 0 0 chr11 110576074 110576368 -40207185 + AluSg SINE Alu 1 294 -16 13871 193 45 32 chr11 110576368 110579670 -40203883 - L1PA16 LINE L1 -3380 3489 1 25 51 0 0 chr11 110579861 110579900 -40203653 + AT_rich Low_complexity Low_complexity 1 39 0 630 285 41 20 chr11 110579967 110580213 -40203340 + L1MC4a LINE L1 6559 6809 -999 1221 208 28 35 chr11 110580496 110580814 -40202739 - MER7A DNA MER2_type -2 344 31 348 284 179 0 chr11 110580836 110580970 -40202583 + L1MC4 LINE L1 7098 7255 -787 338 348 37 19 chr11 110580975 110581136 -40202417 + L1MC4a LINE L1 7252 7415 -393 408 282 77 40 chr11 110581152 110581708 -40201845 + L1MC5 LINE L1 7349 7925 -36 1532 179 25 44 chr11 110581713 110582031 -40201522 + AluJo SINE Alu 1 312 0 2181 118 0 0 chr11 110582766 110583062 -40200491 - AluSx SINE Alu -16 296 1 509 259 61 7 chr11 110583134 110583281 -40200272 + MLT1J1 LTR MaLR 1 155 -291 26 0 0 0 chr11 110583409 110583435 -40200118 + AT_rich Low_complexity Low_complexity 1 26 0 240 202 167 12 chr11 110584172 110584256 -40199297 + L1MD3 LINE L1 6846 6942 -1053 462 268 147 52 chr11 110584369 110584954 -40198599 + L1MC5 LINE L1 7261 7803 -158 288 306 0 0 chr11 110585020 110585128 -40198425 + L1MC5 LINE L1 7806 7913 -48 1911 151 24 50 chr11 110585405 110585821 -40197732 - L1MA4 LINE L1 -8 6292 5888 22 88 0 0 chr11 110585824 110585881 -40197672 + AT_rich Low_complexity Low_complexity 1 57 0 546 360 142 35 chr11 110585972 110586745 -40196808 + L2 LINE L2 1987 2842 -472 334 334 99 74 chr11 110586775 110587098 -40196455 + L2 LINE L2 2942 3272 0 767 307 93 30 chr11 110587985 110588522 -40195031 - L2 LINE L2 -27 3286 2713 336 316 89 18 chr11 110588945 110589113 -40194440 + L2 LINE L2 1726 1905 -1409 237 266 14 7 chr11 110589420 110589559 -40193994 + GA-rich Low_complexity Low_complexity 1 140 0 380 321 69 31 chr11 110590716 110590875 -40192678 - L2 LINE L2 -585 2729 2565 5068 155 27 7 chr11 110590883 110592640 -40190913 + L1MA8 LINE L1 4496 6289 -2 1132 311 38 36 chr11 110592659 110593158 -40190395 - L2 LINE L2 -755 2559 2060 502 240 0 25 chr11 110593174 110593295 -40190258 + FLAM_A SINE Alu 11 128 -14 2336 106 0 0 chr11 110594766 110595069 -40188484 - AluSg SINE Alu -7 303 1 355 218 127 66 chr11 110595114 110595311 -40188242 - MER3 DNA MER1_type 0 209 1 4858 284 52 29 chr11 110595919 110597634 -40185919 + L1PA11 LINE L1 94 2429 -5155 216 0 0 0 chr11 110597634 110597658 -40185895 + (CA)n Simple_repeat Simple_repeat 2 25 0 4858 284 52 29 chr11 110597658 110598591 -40184962 + L1PA11 LINE L1 2429 3339 -4245 4329 169 29 0 chr11 110598586 110599420 -40184133 + L1PA11 LINE L1 3571 4428 -3156 * 1693 195 13 32 chr11 110599422 110599658 -40183895 - THE1C LTR MaLR -2 373 145 2270 128 31 17 chr11 110599658 110600017 -40183536 + THE1B LTR MaLR 1 364 0 1693 195 13 32 chr11 110600017 110600159 -40183394 - THE1C LTR MaLR -230 145 2 12531 164 39 29 chr11 110600159 110600304 -40183249 + L1PA11 LINE L1 4423 4565 -3047 2246 119 7 0 chr11 110600304 110600607 -40182946 + AluSq SINE Alu 1 305 -8 12531 164 39 29 chr11 110600607 110602959 -40180594 + L1PA11 LINE L1 4565 6942 -670 1941 148 0 13 chr11 110602959 110603257 -40180296 + AluSx SINE Alu 17 310 -2 12531 164 39 29 chr11 110603257 110603935 -40179618 + L1PA11 LINE L1 6942 7612 0 873 251 53 4 chr11 110604686 110604929 -40178624 - MLT1I LTR MaLR -3 406 152 371 308 25 0 chr11 110605473 110605593 -40177960 - MIR SINE MIR -51 211 89 1583 180 57 20 chr11 110605788 110606088 -40177465 + AluJb SINE Alu 1 311 -1 189 353 59 0 chr11 110606224 110606292 -40177261 + L2 LINE L2 3158 3229 -43 311 299 165 12 chr11 110606431 110606595 -40176958 + MIR3 SINE MIR 13 201 -7 256 302 21 31 chr11 110607042 110607138 -40176415 - L2 LINE L2 0 3313 3219 331 335 26 7 chr11 110607473 110607625 -40175928 + MER115 DNA AcHobo 1 155 -538 514 320 27 45 chr11 110607674 110607896 -40175657 + MER115 DNA AcHobo 149 366 -327 677 170 14 0 chr11 110610705 110610846 -40172707 - L1MA4 LINE L1 -5 6295 6153 208 382 45 0 chr11 110610956 110611045 -40172508 - MIR SINE MIR -150 112 20 23 0 0 0 chr11 110611130 110611153 -40172400 + AT_rich Low_complexity Low_complexity 1 23 0 293 288 59 25 chr11 110611438 110611556 -40171997 + L2 LINE L2 3192 3313 0 284 258 31 21 chr11 110611688 110611785 -40171768 - MIR SINE MIR -2 260 163 183 369 31 0 chr11 110611871 110611936 -40171617 + L2 LINE L2 3187 3253 -19 410 254 104 0 chr11 110613031 110613204 -40170349 - L1MA9 LINE L1 -53 6259 6069 * 3000 178 36 6 chr11 110613201 110614316 -40169237 - L1MA9 LINE L1 -519 5793 4643 219 402 60 0 chr11 110614405 110614522 -40169031 + L2 LINE L2 3185 3308 -5 225 244 0 0 chr11 110614536 110614577 -40168976 + polypurine Low_complexity Low_complexity 3 43 0 646 235 17 17 chr11 110615387 110615566 -40167987 - MER33 DNA MER1_type -127 197 19 1218 228 74 7 chr11 110615748 110616182 -40167371 + MER89 LTR ERV1 2 559 0 332 332 109 24 chr11 110616273 110616484 -40167069 - L2 LINE L2 0 3313 3085 314 313 62 29 chr11 110616840 110617112 -40166441 + HAL1 LINE L1 1779 2059 -448 266 141 35 71 chr11 110617126 110617211 -40166342 + HAL1 LINE L1 2108 2189 -318 295 360 54 39 chr11 110617502 110617705 -40165848 - L2 LINE L2 -511 2803 2598 1721 211 72 100 chr11 110617808 110618580 -40164973 - LTR1B LTR ERV1 -75 751 1 746 289 36 22 chr11 110618877 110619102 -40164451 - MIR SINE MIR -24 238 11 190 208 0 21 chr11 110619218 110619266 -40164287 + MIR SINE MIR 113 159 -103 1875 174 12 59 chr11 110619367 110619776 -40163777 + MLT1B LTR MaLR 1 390 0 529 278 28 6 chr11 110620372 110620548 -40163005 - LTR41 LTR ERVL -592 181 2 5779 149 9 0 chr11 110620877 110621849 -40161704 - Tigger1 DNA MER2_type -53 2365 1385 37414 34 19 2 chr11 110621852 110627879 -40155674 + L1PA2 LINE L1 1 6150 -5 6621 153 85 33 chr11 110627896 110629212 -40154341 - Tigger1 DNA MER2_type -1034 1384 1 31 26 0 0 chr11 110629244 110629282 -40154271 + AT_rich Low_complexity Low_complexity 1 38 0 2156 200 45 7 chr11 110629479 110629919 -40153634 - MLT1C LTR MaLR -8 459 3 397 262 69 89 chr11 110630260 110630462 -40153091 - MLT1K LTR MaLR -3 585 388 797 262 43 0 chr11 110630470 110630657 -40152896 - MER20 DNA MER1_type -1 218 24 32 57 0 0 chr11 110630799 110630852 -40152701 + AT_rich Low_complexity Low_complexity 1 53 0 398 258 35 86 chr11 110631093 110631291 -40152262 - MLT1J LTR MaLR -321 190 3 226 367 20 20 chr11 110631433 110631531 -40152022 - MIR SINE MIR -64 144 47 203 273 0 0 chr11 110631881 110631925 -40151628 - L2 LINE L2 -92 3180 3137 452 320 48 20 chr11 110632346 110632596 -40150957 + MIR SINE MIR 2 258 -4 449 273 219 48 chr11 110632819 110633171 -40150382 - L2 LINE L2 0 3313 2902 6768 165 86 39 chr11 110633175 110634982 -40148571 + L1MCa LINE L1 4 1991 -4435 923 196 33 0 chr11 110635004 110635188 -40148365 + L1PBa LINE L1 11 200 -6663 10039 126 52 4 chr11 110635188 110637495 -40146058 + L1PBa LINE L1 634 3122 -3740 330 185 0 0 chr11 110637494 110637548 -40146005 + L1M2 LINE L1 2604 2657 -4192 * 12786 61 10 1 chr11 110637550 110639916 -40143637 + L1PA8 LINE L1 3766 6150 -22 458 211 137 0 chr11 110639926 110640021 -40143532 + Tigger2 DNA MER2_type 2611 2718 0 324 264 44 6 chr11 110640024 110640183 -40143370 + L1M2 LINE L1 3041 3203 -3645 * 5485 144 35 38 chr11 110640156 110641171 -40142382 + L1MC1 LINE L1 6019 7030 -5 305 326 58 26 chr11 110641822 110642012 -40141541 + L2 LINE L2 2219 2414 -900 804 228 46 32 chr11 110642694 110642975 -40140578 + L1ME4a LINE L1 5617 5901 -220 4467 28 5 6 chr11 110643123 110643974 -40139579 - L1PA4 LINE L1 -478 5676 4827 3979 27 0 4 chr11 110643934 110644415 -40139138 + L1PA4 LINE L1 5677 6155 0 * 27 0 0 0 chr11 110644417 110644444 -40139109 + AT_rich Low_complexity Low_complexity 1 27 0 1044 333 65 33 chr11 110645048 110645706 -40137847 - HERV16 LTR ERVL -3822 1174 496 2627 152 36 13 chr11 110645833 110646280 -40137273 + LTR32 LTR ERVL 15 471 0 742 217 81 60 chr11 110646351 110646634 -40136919 + MLT1C LTR MaLR 18 306 -161 265 269 78 28 chr11 110646961 110647102 -40136451 - MER65B LTR ERV1 -383 148 1 580 229 65 26 chr11 110647106 110647259 -40136294 + MLT1C LTR MaLR 309 467 0 744 122 0 0 chr11 110647793 110647900 -40135653 + LTR18B LTR ERVL 81 187 -427 1328 108 76 143 chr11 110647905 110648219 -40135334 + LTR18B LTR ERVL 322 614 0 185 314 98 20 chr11 110648700 110648802 -40134751 + L2 LINE L2 2914 3023 -249 355 352 49 12 chr11 110649015 110649177 -40134376 - L2 LINE L2 0 3272 3105 223 164 33 16 chr11 110650424 110650485 -40133068 + GA-rich Low_complexity Low_complexity 4 65 0 32 0 0 0 chr11 110650692 110650724 -40132829 + AT_rich Low_complexity Low_complexity 1 32 0 436 260 106 0 chr11 110650841 110650964 -40132589 - MIR SINE MIR -30 232 97 315 254 8 42 chr11 110651434 110651552 -40132001 - MER46C DNA MER2_type -177 161 48 1131 245 83 100 chr11 110651956 110652495 -40131058 - MLT1F LTR MaLR 0 542 13 227 405 0 0 chr11 110653430 110653509 -40130044 - L2 LINE L2 -86 3186 3108 5319 161 50 13 chr11 110653811 110654898 -40128655 + L1MC2 LINE L1 5215 6341 -3 1212 290 22 27 chr11 110655077 110655484 -40128069 - MLT1H1 LTR MaLR -150 405 1 190 281 31 16 chr11 110655495 110655559 -40127994 - L2 LINE L2 -531 2783 2719 221 254 34 0 chr11 110655769 110655828 -40127725 + L2 LINE L2 3165 3225 -88 2159 100 0 3 chr11 110655925 110656214 -40127339 + AluY SINE Alu 3 290 -21 387 353 59 11 chr11 110656347 110656534 -40127019 - MIR SINE MIR -64 198 3 332 286 167 8 chr11 110656624 110656771 -40126782 + MER5B DNA MER1_type 7 167 -11 225 375 29 0 chr11 110657929 110658033 -40125520 - MIR3 SINE MIR -3 205 99 1634 288 24 16 chr11 110659139 110659650 -40123903 + L2 LINE L2 163 677 -2637 625 293 84 22 chr11 110659844 110660117 -40123436 + L2 LINE L2 3015 3304 -9 39 0 0 0 chr11 110661267 110661306 -40122247 + AT_rich Low_complexity Low_complexity 1 39 0 724 156 52 22 chr11 110661329 110661464 -40122089 + FRAM SINE Alu 20 158 -18 270 250 75 0 chr11 110661599 110661679 -40121874 - MLT1L LTR MaLR -386 229 144 607 316 54 27 chr11 110661692 110661989 -40121564 + L2 LINE L2 2056 2360 -954 1500 86 0 0 chr11 110661991 110662188 -40121365 - L1P3 LINE L1 -526 5628 5432 23 0 0 0 chr11 110662300 110662323 -40121230 + GC_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr11 110662344 110662370 -40121183 + (A)n Simple_repeat Simple_repeat 1 26 0 396 283 25 8 chr11 110662382 110662502 -40121051 - L2 LINE L2 0 3313 3192 2014 115 0 13 chr11 110663125 110663430 -40120123 - AluY SINE Alu -10 301 1 317 294 59 22 chr11 110663613 110663749 -40119804 - L2 LINE L2 -5 3308 3168 511 318 92 15 chr11 110663805 110664142 -40119411 + L1ME4a LINE L1 5497 5859 -262 1597 224 3 12 chr11 110664693 110665037 -40118516 + MER58B DNA MER1_type 1 341 0 589 219 80 13 chr11 110665883 110666034 -40117519 + MLT1B LTR MaLR 1 161 -213 399 83 0 0 chr11 110666039 110666099 -40117454 + (TC)n Simple_repeat Simple_repeat 1 60 0 975 220 25 0 chr11 110666102 110666302 -40117251 + MLT1B LTR MaLR 182 386 -4 4156 216 54 88 chr11 110666310 110667710 -40115843 + MLT1A2-int LTR MaLR 5 1356 -15 1737 200 23 20 chr11 110667723 110668073 -40115480 + MLT1A2 LTR MaLR 1 351 -23 292 343 20 14 chr11 110668086 110668232 -40115321 - MLT1L LTR MaLR -48 567 421 759 260 40 18 chr11 110669937 110670160 -40113393 + MIR SINE MIR 14 241 -21 1406 239 122 16 chr11 110670327 110670857 -40112696 - L2 LINE L2 -5 3308 2735 37203 41 30 2 chr11 110670857 110675505 -40108048 + L1PA3 LINE L1 1 4777 -1369 347 0 0 0 chr11 110675617 110675659 -40107894 - L1PA3 LINE L1 -5 6150 6109 5924 17 1 0 chr11 110675662 110676353 -40107200 + L1PA3 LINE L1 5254 5945 -210 5674 181 21 27 chr11 110676347 110677371 -40106182 - L1P LINE L1 -747 5399 4382 * 186 336 154 45 chr11 110677439 110677659 -40105894 + L2 LINE L2 2589 2832 -482 392 316 11 0 chr11 110677662 110677757 -40105796 - MER91A DNA MER1_type 0 196 101 407 307 127 58 chr11 110677788 110678150 -40105403 + L2 LINE L2 2878 3264 -8 979 160 0 0 chr11 110678159 110678309 -40105244 + AluJo SINE Alu 1 150 -162 444 257 37 37 chr11 110679133 110679269 -40104284 - L2 LINE L2 -1 3271 3136 2428 77 0 0 chr11 110679517 110679815 -40103738 + AluY SINE Alu 1 298 -13 980 87 60 13 chr11 110680288 110680438 -40103115 + L1PA11 LINE L1 6018 6174 0 291 221 53 53 chr11 110680496 110680591 -40102962 + MIR3 SINE MIR 60 154 -54 506 264 18 6 chr11 110682384 110682551 -40101002 + LTR16A1 LTR ERVL 285 453 -4 319 287 36 92 chr11 110683452 110683755 -40099798 + L2 LINE L2 3028 3313 0 233 208 0 0 chr11 110684699 110684747 -40098806 - MIR SINE MIR -54 208 161 342 281 25 16 chr11 110684753 110684874 -40098679 - LTR67 LTR ERVL -8 549 428 329 285 53 33 chr11 110685028 110685179 -40098374 + L2 LINE L2 3125 3278 -35 430 280 186 5 chr11 110685180 110685339 -40098214 - MIR SINE MIR -57 151 5 303 211 46 73 chr11 110685520 110685629 -40097924 - MIR SINE MIR -79 183 78 1388 225 123 10 chr11 110685636 110686050 -40097503 + MLT1C LTR MaLR 6 466 -1 190 311 0 0 chr11 110686059 110686120 -40097433 - MIR SINE MIR -145 117 57 1415 138 13 0 chr11 110686242 110686467 -40097086 - L1PA15 LINE L1 -6 6159 5932 5519 6 6 3 chr11 110686641 110687269 -40096284 - L1PA2 LINE L1 0 6155 5526 40784 36 24 1 chr11 110687369 110692822 -40090731 - L1P1 LINE L1 -574 5581 1 617 298 71 8 chr11 110693265 110693426 -40090127 - MIR SINE MIR -2 260 78 2096 167 59 9 chr11 110693426 110693869 -40089684 - MLT1C LTR MaLR -2 465 1 617 298 71 8 chr11 110693869 110693945 -40089608 - MIR SINE MIR -184 78 8 866 311 55 16 chr11 110694497 110694876 -40088677 + LTR16C LTR ERVL 96 489 -2 276 273 0 0 chr11 110694879 110694945 -40088608 + MIR SINE MIR 78 143 -119 2444 233 114 14 chr11 110694965 110695827 -40087726 + L1MC4 LINE L1 6951 7898 -144 845 352 54 19 chr11 110696058 110696922 -40086631 + L1MEc LINE L1 39 933 -5463 8303 145 53 7 chr11 110696979 110699781 -40083772 + L1PB3 LINE L1 1 3131 -3731 40594 49 6 1 chr11 110699783 110705890 -40077663 + L1PA4 LINE L1 2 6144 -11 8457 221 11 88 chr11 110705897 110708935 -40074618 + L1 LINE L1 2401 5203 -943 3442 144 17 41 chr11 110708936 110709733 -40073820 + L1PB3 LINE L1 5284 6040 -830 1081 36 0 14 chr11 110709733 110709872 -40073681 + L1PA4 LINE L1 6016 6152 -3 3442 144 17 41 chr11 110709872 110710332 -40073221 + L1PB3 LINE L1 6040 6510 -360 276 184 10 51 chr11 110710333 110710415 -40073138 + (TA)n Simple_repeat Simple_repeat 2 81 -14 2118 166 3 3 chr11 110710415 110710782 -40072771 + L1PB3 LINE L1 6498 6864 -6 276 184 10 51 chr11 110710782 110710797 -40072756 + (TA)n Simple_repeat Simple_repeat 81 95 0 502 278 76 16 chr11 110710815 110711185 -40072368 + L1MEc LINE L1 1187 1578 -4818 218 308 0 0 chr11 110711268 110711320 -40072233 - L2 LINE L2 0 3272 3221 412 367 112 11 chr11 110711592 110711870 -40071683 - L2 LINE L2 -456 2858 2553 211 280 53 27 chr11 110712544 110712619 -40070934 + MIR SINE MIR 96 172 -90 5544 158 20 19 chr11 110714400 110715445 -40068108 + L1MA9 LINE L1 4745 5799 -513 243 88 0 0 chr11 110715445 110715479 -40068074 + (CA)n Simple_repeat Simple_repeat 1 34 0 5544 158 20 19 chr11 110715479 110715992 -40067561 + L1MA9 LINE L1 5799 6310 -2 609 246 33 33 chr11 110716026 110716241 -40067312 + L1ME1 LINE L1 5945 6159 -7 1750 118 96 0 chr11 110716786 110717057 -40066496 + AluSx SINE Alu 1 297 -15 2248 162 8 8 chr11 110717246 110717634 -40065919 + MLT1B LTR MaLR 1 388 -2 469 271 90 28 chr11 110718063 110718240 -40065313 + MER5A DNA MER1_type 1 188 -1 493 266 26 39 chr11 110718530 110718684 -40064869 - MER5B DNA MER1_type 0 178 27 6074 136 25 1 chr11 110718802 110719660 -40063893 + L1PA4 LINE L1 5277 6154 -1 248 352 72 31 chr11 110719722 110720040 -40063513 + L2 LINE L2 1493 1823 -1491 1972 162 7 0 chr11 110720044 110720340 -40063213 - AluSx SINE Alu -14 298 1 182 317 168 30 chr11 110720347 110720448 -40063105 - L2 LINE L2 -5 3267 3153 190 260 110 0 chr11 110721422 110721495 -40062058 + MIR SINE MIR 154 234 -28 529 362 11 15 chr11 110721638 110721906 -40061647 - LTR16A LTR ERVL -168 282 16 1631 256 71 7 chr11 110722777 110723214 -40060339 + MLT2B1 LTR ERVL 1 465 -55 308 330 0 0 chr11 110724323 110724411 -40059142 - MIR SINE MIR -128 134 47 2536 214 33 27 chr11 110724436 110725100 -40058453 + L1ME1 LINE L1 5395 6062 -104 2022 104 0 3 chr11 110725201 110725500 -40058053 - L1PA8 LINE L1 0 6172 5875 22 0 0 0 chr11 110725587 110725609 -40057944 + AT_rich Low_complexity Low_complexity 1 22 0 183 320 0 0 chr11 110725748 110725798 -40057755 - MIR SINE MIR -211 51 2 387 0 0 0 chr11 110725996 110726039 -40057514 + (TG)n Simple_repeat Simple_repeat 1 43 0 329 291 19 14 chr11 110726375 110726527 -40057026 + LTR16A1 LTR ERVL 1 154 -296 1675 313 65 55 chr11 110726532 110728471 -40055082 + HERV16 LTR ERVL 2396 4387 -1332 2639 156 0 11 chr11 110728474 110728911 -40054642 - MSTB1 LTR MaLR 0 432 1 6593 220 52 18 chr11 110728911 110730508 -40053045 - MSTB1-int LTR MaLR 0 1651 1 1933 186 40 35 chr11 110730508 110730938 -40052615 - MSTB1 LTR MaLR 0 432 1 589 376 43 5 chr11 110730939 110731356 -40052197 + HERV16 LTR ERVL 4348 4780 -874 264 285 7 36 chr11 110731512 110731649 -40051904 + HERV16 LTR ERVL 4534 4666 -330 401 341 45 8 chr11 110732087 110732219 -40051334 + LTR16A LTR ERVL 115 251 -199 316 300 0 22 chr11 110732223 110732313 -40051240 - MER5A DNA MER1_type -101 88 1 2061 138 0 0 chr11 110732470 110732766 -40050787 + AluSx SINE Alu 3 298 -14 834 207 14 150 chr11 110733415 110733699 -40049854 - MLT1A1 LTR MaLR 0 365 155 2189 114 93 3 chr11 110733699 110734033 -40049520 - THE1B LTR MaLR 0 364 1 834 207 14 150 chr11 110734033 110734168 -40049385 - MLT1A1 LTR MaLR -210 155 3 752 201 79 57 chr11 110734428 110734657 -40048896 + L1MA9 LINE L1 1 234 -5907 2555 220 75 14 chr11 110734747 110735892 -40047661 + L1MA9 LINE L1 817 1991 -4220 5726 148 34 14 chr11 110736127 110738653 -40044900 + L1PB1 LINE L1 6 6867 0 795 162 25 54 chr11 110738649 110738717 -40044836 + L1MA9 LINE L1 4243 4311 -1899 * 2057 151 3 0 chr11 110738717 110739016 -40044537 + AluSq SINE Alu 1 300 -13 795 162 25 54 chr11 110739016 110739188 -40044365 + L1MA9 LINE L1 4311 4476 -1734 817 216 19 9 chr11 110739376 110739589 -40043964 + L1MA9 LINE L1 4808 5022 -1188 3455 218 191 20 chr11 110739598 110740620 -40042933 + L1PA13 LINE L1 2 1198 -5589 5035 185 18 6 chr11 110740633 110741916 -40041637 + L1PA13 LINE L1 1396 2703 -4094 9562 165 19 5 chr11 110741926 110744593 -40038960 + L1PA13 LINE L1 4106 6811 -3 1331 198 59 0 chr11 110744593 110744931 -40038622 + L1MA9 LINE L1 5013 5370 -840 1613 155 0 44 chr11 110744967 110745283 -40038270 + AluJo SINE Alu 1 302 -10 1121 162 1 39 chr11 110745288 110745575 -40037978 + L1MA9 LINE L1 5368 5621 -734 410 122 54 0 chr11 110745607 110745681 -40037872 + L1MA9 LINE L1 6085 6162 -214 1716 165 71 6 chr11 110745686 110746008 -40037545 - MER7A DNA MER2_type 0 346 6 980 107 54 63 chr11 110746013 110746218 -40037335 + L1MA9 LINE L1 6174 6376 0 28 0 0 0 chr11 110746423 110746451 -40037102 + AT_rich Low_complexity Low_complexity 1 28 0 317 198 87 16 chr11 110747069 110747195 -40036358 + MER113 DNA MER1_type? 12 146 -375 297 220 0 0 chr11 110747298 110747357 -40036196 + MER113 DNA MER1_type? 463 521 0 295 230 40 14 chr11 110748029 110748103 -40035450 - L3 LINE CR1 -70 1507 1432 331 176 107 23 chr11 110748190 110748321 -40035232 - MER113 DNA MER1_type? -373 148 7 29 0 0 0 chr11 110748700 110748729 -40034824 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 110748891 110748912 -40034641 + AT_rich Low_complexity Low_complexity 1 21 0 288 208 97 0 chr11 110749639 110749711 -40033842 - MIR SINE MIR -3 259 181 491 252 14 28 chr11 110749713 110749856 -40033697 + L2 LINE L2 3172 3312 -1 768 168 32 0 chr11 110749947 110750072 -40033481 + FLAM_C SINE Alu 2 130 -3 21 0 0 0 chr11 110750113 110750134 -40033419 + AT_rich Low_complexity Low_complexity 1 21 0 526 187 28 0 chr11 110751709 110751816 -40031737 + MLT1F1 LTR MaLR 355 464 -103 510 348 109 36 chr11 110752191 110752859 -40030694 + L2 LINE L2 2551 3272 0 234 328 174 31 chr11 110754739 110754934 -40028619 - L2 LINE L2 -1 3271 3049 380 308 43 17 chr11 110755003 110755120 -40028433 - L2 LINE L2 0 3272 3153 561 338 15 0 chr11 110755277 110755475 -40028078 - MIR SINE MIR -56 206 6 407 267 53 135 chr11 110756100 110756381 -40027172 - MIR SINE MIR 0 262 5 428 294 73 0 chr11 110756496 110756632 -40026921 + MIR3 SINE MIR 42 187 -21 22 0 0 0 chr11 110757673 110757695 -40025858 + AT_rich Low_complexity Low_complexity 1 22 0 326 331 16 8 chr11 110758111 110758238 -40025315 - MER91B DNA MER1_type -62 128 1 2159 131 50 25 chr11 110758286 110758690 -40024863 + MSTA LTR MaLR 1 414 -14 545 231 44 31 chr11 110758804 110758964 -40024589 - MIR SINE MIR -1 261 100 234 0 0 0 chr11 110759494 110759520 -40024033 + (T)n Simple_repeat Simple_repeat 1 26 0 234 328 174 31 chr11 110759747 110759942 -40023611 + L2 LINE L2 3049 3271 -1 524 348 109 36 chr11 110761822 110762490 -40021063 - L2 LINE L2 0 3272 2551 526 187 28 0 chr11 110762865 110762972 -40020581 - MLT1F1 LTR MaLR -103 464 355 21 0 0 0 chr11 110764547 110764568 -40018985 + AT_rich Low_complexity Low_complexity 1 21 0 768 168 32 0 chr11 110764609 110764734 -40018819 - FLAM_C SINE Alu -3 130 2 491 252 14 28 chr11 110764825 110764968 -40018585 - L2 LINE L2 -1 3312 3172 288 208 97 0 chr11 110764970 110765042 -40018511 + MIR SINE MIR 181 259 -3 21 0 0 0 chr11 110765769 110765790 -40017763 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr11 110765952 110765981 -40017572 + AT_rich Low_complexity Low_complexity 1 29 0 331 176 107 23 chr11 110766360 110766491 -40017062 + MER113 DNA MER1_type? 7 148 -373 295 230 40 14 chr11 110766578 110766652 -40016901 + L3 LINE CR1 1432 1507 -70 297 220 0 0 chr11 110767324 110767383 -40016170 - MER113 DNA MER1_type? 0 521 463 317 198 87 16 chr11 110767486 110767612 -40015941 - MER113 DNA MER1_type? -375 146 12 28 0 0 0 chr11 110768230 110768258 -40015295 + AT_rich Low_complexity Low_complexity 1 28 0 980 107 54 63 chr11 110768463 110768668 -40014885 - L1MA9 LINE L1 0 6312 6110 1717 165 71 6 chr11 110768673 110768995 -40014558 + MER7A DNA MER2_type 6 346 0 384 110 68 0 chr11 110769000 110769073 -40014480 - L1MA9 LINE L1 -214 6098 6021 1090 160 3 118 chr11 110769105 110769392 -40014161 - L1MA9 LINE L1 -755 5557 5304 1934 160 0 16 chr11 110769397 110769704 -40013849 - AluJo SINE Alu -10 302 1 1018 177 37 35 chr11 110769953 110770276 -40013277 - MLT1A1 LTR MaLR 0 365 9 1867 147 10 16 chr11 110770364 110770678 -40012875 + AluJo SINE Alu 1 312 0 186 294 59 24 chr11 110771995 110772080 -40011473 - MIR SINE MIR -52 210 123 22 0 0 0 chr11 110773459 110773481 -40010072 + AT_rich Low_complexity Low_complexity 1 22 0 348 288 56 81 chr11 110773627 110773787 -40009766 + MIR3 SINE MIR 5 158 -50 228 270 234 0 chr11 110773804 110773915 -40009638 + MER5A DNA MER1_type 44 180 -9 239 204 0 20 chr11 110774395 110774444 -40009109 + MER34 LTR ERV1 1 48 -494 2698 302 25 19 chr11 110774446 110774708 -40008845 + LTR51 LTR ERV1 2 261 -410 2138 120 7 0 chr11 110774708 110775007 -40008546 - AluSg SINE Alu -9 301 1 2698 302 25 19 chr11 110775007 110775410 -40008143 + LTR51 LTR ERV1 261 671 0 261 194 15 45 chr11 110775438 110775505 -40008048 + MER34 LTR ERV1 51 115 -427 * 493 213 62 104 chr11 110775482 110775596 -40007957 + LTR48B LTR ERV1 134 234 -410 2377 66 0 10 chr11 110775596 110775897 -40007656 + AluY SINE Alu 1 298 -13 493 213 62 104 chr11 110775897 110776022 -40007531 + LTR48B LTR ERV1 234 363 -281 2375 88 0 0 chr11 110776022 110776328 -40007225 + AluY SINE Alu 1 306 -5 207 0 0 0 chr11 110776847 110776870 -40006683 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 279 316 42 0 chr11 110777281 110777376 -40006177 - MIR3 SINE MIR -34 174 76 524 263 9 0 chr11 110777549 110777663 -40005890 + MLT1E LTR MaLR 51 165 -428 1951 163 0 0 chr11 110777764 110778053 -40005500 - AluSx SINE Alu -23 289 1 332 296 25 0 chr11 110778841 110778922 -40004631 - MIR3 SINE MIR -6 202 120 226 274 82 104 chr11 110778848 110778983 -40004570 - L3b LINE CR1 -11 1572 1441 * 698 186 41 90 chr11 110779216 110779380 -40004173 - LTR37B LTR ERV1 0 468 322 1948 119 12 80 chr11 110779380 110779707 -40003846 + AluSx SINE Alu 1 305 -7 698 186 41 90 chr11 110779707 110779832 -40003721 - LTR37B LTR ERV1 -146 322 193 808 191 115 21 chr11 110784376 110784611 -39998942 - MER39 LTR ERV1 0 707 451 565 200 31 23 chr11 110784716 110784846 -39998707 - MER39 LTR ERV1 -237 470 340 1920 155 75 39 chr11 110784867 110785306 -39998247 - MSTB2 LTR MaLR -2 455 1 22 35 0 0 chr11 110786973 110787002 -39996551 + AT_rich Low_complexity Low_complexity 1 29 0 342 155 42 0 chr11 110787318 110787389 -39996164 - L1MC2 LINE L1 -9 6335 6262 2072 173 86 0 chr11 110787436 110787857 -39995696 + L1MB7 LINE L1 5650 6106 -78 2340 65 3 0 chr11 110787871 110788162 -39995391 + AluY SINE Alu 13 304 -7 22 0 0 0 chr11 110788751 110788773 -39994780 + AT_rich Low_complexity Low_complexity 1 22 0 3610 154 8 8 chr11 110789756 110790367 -39993186 - L1PA16 LINE L1 -4 6162 5552 259 311 15 0 chr11 110792419 110792554 -39990999 + L1ME LINE L1 5762 5898 -223 1826 181 0 16 chr11 110792837 110793152 -39990401 + AluJb SINE Alu 1 310 -2 391 257 131 69 chr11 110793549 110793634 -39989919 - MER5A DNA MER1_type 0 189 111 2145 133 0 3 chr11 110793634 110793943 -39989610 + AluSx SINE Alu 1 308 -4 391 257 131 69 chr11 110793943 110794032 -39989521 - MER5A DNA MER1_type -78 111 4 26 0 0 0 chr11 110794201 110794227 -39989326 + AT_rich Low_complexity Low_complexity 1 26 0 362 333 0 0 chr11 110794435 110794534 -39989019 + MIR SINE MIR 37 135 -73 195 42 0 0 chr11 110794890 110794914 -39988639 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2446 106 0 0 chr11 110794914 110795225 -39988328 + AluSx SINE Alu 1 311 -1 654 252 142 14 chr11 110795406 110795624 -39987929 - MIR SINE MIR 0 262 17 24 53 0 0 chr11 110796237 110796275 -39987278 + AT_rich Low_complexity Low_complexity 1 38 0 189 268 0 0 chr11 110796551 110796592 -39986961 - L2 LINE L2 -12 3301 3261 214 238 271 41 chr11 110797543 110797665 -39985888 - L2 LINE L2 -6 3307 3158 439 359 31 0 chr11 110797829 110798021 -39985532 + MIR SINE MIR 49 246 -16 533 131 9 0 chr11 110798254 110798361 -39985192 + (TC)n Simple_repeat Simple_repeat 1 108 0 232 127 16 111 chr11 110799918 110799957 -39983596 - MLT2B2 LTR ERVL 0 520 488 606 14 0 0 chr11 110799957 110800028 -39983525 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 232 127 16 111 chr11 110800028 110800051 -39983502 - MLT2B2 LTR ERVL -32 488 464 189 74 0 0 chr11 110800068 110800095 -39983458 + (TA)n Simple_repeat Simple_repeat 2 28 0 2094 172 91 27 chr11 110800100 110800541 -39983012 - MLT2B2 LTR ERVL -46 469 1 444 37 0 0 chr11 110801000 110801054 -39982499 + (TG)n Simple_repeat Simple_repeat 1 54 0 580 343 70 36 chr11 110802945 110803529 -39980024 + L2 LINE L2 1537 2140 -1174 591 343 171 27 chr11 110805737 110806525 -39977028 + L2 LINE L2 2125 3050 -222 220 147 0 0 chr11 110807327 110807361 -39976192 + L2 LINE L2 3239 3272 0 2675 175 60 15 chr11 110808337 110808846 -39974707 - MLT1F1 LTR MaLR -7 560 24 1707 130 4 15 chr11 110808846 110809108 -39974445 - AluY SINE Alu -14 297 39 2675 175 60 15 chr11 110809108 110809134 -39974419 - MLT1F1 LTR MaLR -543 24 1 273 231 14 27 chr11 110809728 110809875 -39973678 + GA-rich Low_complexity Low_complexity 2 146 0 298 171 13 13 chr11 110809915 110809991 -39973562 + A-rich Low_complexity Low_complexity 3 78 0 478 269 58 0 chr11 110810578 110810749 -39972804 + L1MC4 LINE L1 6448 6628 -1414 585 92 0 0 chr11 110810777 110810853 -39972700 + AluS SINE Alu 1 76 -237 6041 51 1 0 chr11 110810853 110811643 -39971910 - L1P LINE L1 -1414 4732 3942 * 7204 158 7 7 chr11 110811639 110813018 -39970535 - L1P LINE L1 -2522 3624 2246 365 200 180 0 chr11 110813020 110813120 -39970433 + MLT1A1 LTR MaLR 248 365 0 1644 252 85 9 chr11 110813127 110813667 -39969886 + L1MC4 LINE L1 7316 7896 -146 499 346 74 40 chr11 110813868 110814313 -39969240 - L2 LINE L2 0 3272 2813 542 306 48 48 chr11 110815400 110815652 -39967901 - MIR SINE MIR 0 262 11 334 314 129 110 chr11 110815763 110816136 -39967417 - L2 LINE L2 -21 3251 2872 261 0 0 0 chr11 110816198 110816227 -39967326 + (TG)n Simple_repeat Simple_repeat 2 30 0 1637 144 0 4 chr11 110816517 110816746 -39966807 - AluSx SINE Alu -31 281 54 30 83 0 0 chr11 110817160 110817232 -39966321 + AT_rich Low_complexity Low_complexity 1 72 0 202 355 148 9 chr11 110817242 110817459 -39966094 + L2 LINE L2 1707 1953 -1361 316 364 98 41 chr11 110817529 110818108 -39965445 + L2 LINE L2 2416 3025 -247 1828 120 42 32 chr11 110818282 110818565 -39964988 - AluSg SINE Alu -24 286 1 1346 195 11 29 chr11 110818591 110818863 -39964690 + AluJo SINE Alu 24 290 -22 837 238 159 35 chr11 110820669 110821039 -39962514 + MER47B DNA MER2_type 2 417 -1 1878 100 4 15 chr11 110821294 110821554 -39961999 - AluSx SINE Alu -55 257 1 517 265 51 20 chr11 110821801 110821997 -39961556 - MLT1L LTR MaLR -16 599 398 468 261 31 0 chr11 110822113 110822243 -39961310 - MLT1L LTR MaLR -381 234 101 2369 83 3 10 chr11 110823581 110823893 -39959660 + AluY SINE Alu 1 310 -1 363 233 44 0 chr11 110824040 110824130 -39959423 + L1MDa LINE L1 17 110 -6430 1261 281 70 17 chr11 110824163 110824579 -39958974 + L1MDa LINE L1 589 1026 -5514 5215 264 53 20 chr11 110824583 110826233 -39957320 + L1PA11 LINE L1 7 1710 -5871 * 7670 223 19 27 chr11 110826208 110827443 -39956110 + L1PA11 LINE L1 2212 3424 -4160 2190 114 0 0 chr11 110827443 110827741 -39955812 + AluY SINE Alu 1 298 -13 7670 223 19 27 chr11 110827741 110828658 -39954895 + L1PA11 LINE L1 3424 4347 -3237 2133 126 0 0 chr11 110828658 110828973 -39954580 + AluSx SINE Alu 1 315 0 9499 142 11 2 chr11 110828975 110831833 -39951720 + L1PA11 LINE L1 4720 7611 -1 4092 212 65 32 chr11 110831835 110832551 -39951002 + L1MDa LINE L1 1012 1703 -4837 204 40 0 0 chr11 110832551 110832576 -39950977 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 4092 212 65 32 chr11 110832576 110833248 -39950305 + L1MDa LINE L1 1703 2446 -4094 1501 220 49 5 chr11 110833357 110833803 -39949750 + L1MDa LINE L1 2658 3123 -3417 199 380 91 0 chr11 110833814 110833935 -39949618 + L2 LINE L2 3161 3292 -21 1947 238 60 87 chr11 110834187 110835322 -39948231 + L1ME LINE L1 12 1409 -4592 1775 171 0 0 chr11 110835347 110835627 -39947926 + AluSx SINE Alu 21 300 -12 251 322 34 27 chr11 110835660 110835809 -39947744 + L1MC5 LINE L1 6687 6836 -1125 * 285 261 83 50 chr11 110835806 110836024 -39947529 + L1MDa LINE L1 1649 1873 -4667 1670 169 3 40 chr11 110836290 110836592 -39946961 + AluJo SINE Alu 3 293 -19 2918 122 28 0 chr11 110836921 110837381 -39946172 + L1PB1 LINE L1 5679 6151 0 252 300 31 55 chr11 110837408 110837647 -39945906 - L2 LINE L2 -1034 2280 1993 559 215 36 124 chr11 110837738 110837835 -39945718 + L1MC5 LINE L1 6741 6845 -1116 1947 124 4 0 chr11 110837835 110838108 -39945445 + AluSx SINE Alu 29 302 -10 559 215 36 124 chr11 110838108 110838340 -39945213 + L1MC5 LINE L1 6845 7041 -920 235 220 136 59 chr11 110839250 110839368 -39944185 - MIR SINE MIR 0 262 136 833 198 44 6 chr11 110839621 110839803 -39943750 + MER5A DNA MER1_type 1 189 0 358 345 17 0 chr11 110839803 110839922 -39943631 + MER5A DNA MER1_type 7 127 -62 635 259 49 32 chr11 110840941 110841126 -39942427 - MIR3 SINE MIR -6 202 15 1943 169 82 22 chr11 110841759 110841809 -39941744 - MSTA LTR MaLR -1 427 381 2354 86 0 46 chr11 110841809 110842133 -39941420 - AluY SINE Alu -2 309 1 1943 169 82 22 chr11 110842133 110842485 -39941068 - MSTA LTR MaLR -47 381 1 8427 174 13 17 chr11 110842490 110844142 -39939411 - MSTA-int LTR MaLR -6 1645 1 2021 158 102 13 chr11 110844142 110844535 -39939018 - MSTA LTR MaLR 0 428 1 3180 127 47 4 chr11 110844981 110845471 -39938082 + MER9 LTR ERVK 1 511 0 1787 121 145 15 chr11 110845693 110846025 -39937528 + THE1C LTR MaLR 1 375 0 338 221 42 11 chr11 110846414 110846509 -39937044 + MER115 DNA AcHobo 593 690 -3 222 367 22 11 chr11 110846511 110846601 -39936952 + L3 LINE CR1 1404 1494 -83 201 231 0 0 chr11 110846601 110846640 -39936913 + CT-rich Low_complexity Low_complexity 3 41 0 628 130 0 62 chr11 110846916 110847108 -39936445 + (TATG)n Simple_repeat Simple_repeat 1 180 0 216 158 0 0 chr11 110847489 110847527 -39936026 + CT-rich Low_complexity Low_complexity 2 39 0 309 51 0 0 chr11 110847527 110847566 -39935987 + (CA)n Simple_repeat Simple_repeat 1 39 0 2090 116 7 0 chr11 110847744 110848046 -39935507 - AluSx SINE Alu -7 305 2 26 0 0 0 chr11 110848054 110848080 -39935473 + AT_rich Low_complexity Low_complexity 1 26 0 448 261 26 0 chr11 110848867 110848982 -39934571 - MER63 DNA MER1_type -273 789 672 209 182 0 0 chr11 110848984 110849017 -39934536 + polypurine Low_complexity Low_complexity 1 33 0 2154 114 7 0 chr11 110849991 110850315 -39933238 + AluSg SINE Alu 1 310 0 424 192 100 15 chr11 110850395 110850525 -39933028 + MER103 DNA DNA 16 156 -10 22 0 0 0 chr11 110851596 110851618 -39931935 + AT_rich Low_complexity Low_complexity 1 22 0 316 253 50 10 chr11 110852130 110852229 -39931324 + L1ME4a LINE L1 6018 6120 -1 198 209 70 0 chr11 110853848 110853891 -39929662 + L2 LINE L2 3263 3308 -5 407 239 0 80 chr11 110854096 110854209 -39929344 - MIR SINE MIR -56 206 103 237 65 0 0 chr11 110854403 110854434 -39929119 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 389 248 143 29 chr11 110855078 110855288 -39928265 + HAL1 LINE L1 2228 2461 -46 2472 161 60 12 chr11 110855289 110855792 -39927761 - L1MB4 LINE L1 -1 6179 5653 204 254 30 0 chr11 110855872 110855939 -39927614 + (TGAA)n Simple_repeat Simple_repeat 2 70 0 359 210 40 51 chr11 110856060 110856190 -39927363 + MIR SINE MIR 6 143 -65 220 337 84 12 chr11 110856309 110856392 -39927161 - L2 LINE L2 -62 3210 3122 289 292 58 8 chr11 110857133 110857253 -39926300 + MER110A LTR ERV1 343 468 0 2345 90 10 0 chr11 110857778 110858079 -39925474 + AluSp SINE Alu 1 304 -9 618 270 75 44 chr11 110858326 110858428 -39925125 - MIR SINE MIR 0 262 165 1482 184 119 3 chr11 110858428 110858755 -39924798 + MLT1A1 LTR MaLR 1 365 0 618 270 75 44 chr11 110858755 110858904 -39924649 - MIR SINE MIR -97 165 3 307 305 93 40 chr11 110859181 110859332 -39924221 + MIR3 SINE MIR 26 184 -24 2121 99 7 3 chr11 110859593 110859885 -39923668 + AluSc SINE Alu 1 293 -16 865 208 33 14 chr11 110861141 110861353 -39922200 - L1MA9 LINE L1 -38 6274 6059 1413 163 14 28 chr11 110862900 110863183 -39920370 - L1MB7 LINE L1 -97 6087 5809 400 297 28 14 chr11 110863265 110863477 -39920076 + L1ME LINE L1 5560 5774 -347 1789 179 0 3 chr11 110863477 110863768 -39919785 - 7SLRNA srpRNA srpRNA -9 311 22 210 177 25 89 chr11 110865721 110865800 -39917753 + MIR SINE MIR 189 262 0 425 297 34 0 chr11 110866024 110866142 -39917411 - L2 LINE L2 -211 3061 2940 794 205 68 0 chr11 110866293 110866483 -39917070 + L1MC4 LINE L1 7339 7541 -501 2690 186 21 37 chr11 110866492 110867607 -39915946 + L1M3 LINE L1 4671 5784 -387 1584 195 50 17 chr11 110867607 110867899 -39915654 + AluJb SINE Alu 1 305 -7 1044 70 0 0 chr11 110867899 110868041 -39915512 + (GGAA)n Simple_repeat Simple_repeat 3 144 0 611 156 0 0 chr11 110868502 110868598 -39914955 - AluJ/FLAM SINE Alu -215 97 2 2220 101 14 14 chr11 110871755 110872052 -39911501 + AluSx SINE Alu 2 298 -14 315 302 8 23 chr11 110872608 110872737 -39910816 - MLT1K LTR MaLR -321 267 141 2320 88 3 0 chr11 110873449 110873744 -39909809 - AluSq SINE Alu -17 296 1 342 329 15 7 chr11 110873800 110873937 -39909616 + L2 LINE L2 2274 2411 -903 254 361 68 37 chr11 110873974 110874270 -39909283 + L2 LINE L2 2549 2853 -461 550 213 207 0 chr11 110874427 110874577 -39908976 - MER5A DNA MER1_type 0 189 9 1034 184 0 0 chr11 110874609 110874777 -39908776 - AluSg/x SINE Alu -20 290 123 306 107 107 0 chr11 110874777 110874889 -39908664 + (TA)n Simple_repeat Simple_repeat 2 125 0 1335 198 78 62 chr11 110875130 110875448 -39908105 + L1MC4 LINE L1 7572 7884 -158 252 0 0 0 chr11 110875448 110875476 -39908077 + (TG)n Simple_repeat Simple_repeat 2 29 0 1335 198 78 62 chr11 110875476 110875564 -39907989 + L1MC4 LINE L1 7884 7969 -73 2100 125 3 28 chr11 110875564 110875885 -39907668 - AluSp SINE Alu 0 313 1 2318 104 10 0 chr11 110875885 110876194 -39907359 - AluSx SINE Alu 0 312 1 2163 114 7 3 chr11 110876194 110876492 -39907061 - AluSq SINE Alu -14 299 1 1335 198 78 62 chr11 110876492 110876546 -39907007 + L1MC4 LINE L1 7968 8042 0 22 0 0 0 chr11 110877334 110877356 -39906197 + AT_rich Low_complexity Low_complexity 1 22 0 1719 136 68 31 chr11 110877384 110877708 -39905845 - MER44D DNA MER2_type -2 607 2 336 261 150 72 chr11 110877782 110877962 -39905591 + MIR3 SINE MIR 10 203 -5 252 244 49 16 chr11 110878270 110878393 -39905160 - L1ME4a LINE L1 -2 6119 5993 271 250 12 0 chr11 110878786 110878870 -39904683 - LTR33A LTR ERVL -3 520 436 256 280 126 14 chr11 110878952 110879095 -39904458 - LTR50 LTR ERVL -134 661 503 304 266 0 0 chr11 110879130 110879209 -39904344 + MIR SINE MIR 133 211 -51 199 364 15 0 chr11 110879232 110879298 -39904255 + MIR SINE MIR 3 69 -193 306 283 121 0 chr11 110879422 110879521 -39904032 - MIR SINE MIR -89 173 63 481 241 9 113 chr11 110879536 110879562 -39903991 + L2 LINE L2 3120 3147 -166 1219 188 50 102 chr11 110879562 110879945 -39903608 - MLT1A1 LTR MaLR -2 363 1 481 241 9 113 chr11 110879945 110880130 -39903423 + L2 LINE L2 3147 3309 -4 180 194 242 0 chr11 110881051 110881113 -39902440 - MIR SINE MIR -122 140 64 204 156 0 22 chr11 110882010 110882055 -39901498 + A-rich Low_complexity Low_complexity 5 48 0 2101 121 7 0 chr11 110882882 110883193 -39900360 + AluSx SINE Alu 1 313 0 625 230 8 8 chr11 110884258 110884384 -39899169 - FLAM_A SINE Alu -7 126 1 2007 119 14 0 chr11 110884584 110884869 -39898684 - AluSx SINE Alu -13 299 11 181 286 82 0 chr11 110884964 110885013 -39898540 + MIR SINE MIR 69 121 -141 347 302 8 23 chr11 110885176 110885305 -39898248 + MLT1K LTR MaLR 141 267 -321 246 290 14 0 chr11 110885511 110885580 -39897973 + MLT1K LTR MaLR 517 586 -2 786 219 82 0 chr11 110885907 110886053 -39897500 + AluJb SINE Alu 145 302 -10 1041 65 0 0 chr11 110886053 110886191 -39897362 + (GGAA)n Simple_repeat Simple_repeat 3 140 0 1948 176 47 5 chr11 110886194 110886581 -39896972 + L1MB2 LINE L1 5769 6171 0 2378 91 0 0 chr11 110886591 110886888 -39896665 + AluY SINE Alu 1 297 -14 18372 164 23 22 chr11 110886937 110889129 -39894424 + L1PB1 LINE L1 26 2215 -4647 2637 111 19 11 chr11 110889129 110889490 -39894063 + THE1B LTR MaLR 1 364 0 18372 164 23 22 chr11 110889490 110890275 -39893278 + L1PB1 LINE L1 2215 2998 -3864 1753 175 3 0 chr11 110890275 110890560 -39892993 + AluSx SINE Alu 1 286 -26 18372 164 23 22 chr11 110890560 110892791 -39890762 + L1PB1 LINE L1 2998 5229 -1633 608 62 0 0 chr11 110892794 110892888 -39890665 + L1PA3 LINE L1 10 380 -6081 * 38211 33 26 2 chr11 110892855 110898331 -39885222 + L1PA3 LINE L1 893 6470 0 6407 141 9 9 chr11 110898327 110899970 -39883583 + L1PB1 LINE L1 5222 6865 -2 * 21 0 0 0 chr11 110899970 110899991 -39883562 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr11 110900006 110900032 -39883521 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1467 215 91 21 chr11 110900033 110900356 -39883197 + L1MC4 LINE L1 7567 7927 -115 252 0 0 0 chr11 110900356 110900384 -39883169 + (TG)n Simple_repeat Simple_repeat 2 29 0 1467 215 91 21 chr11 110900384 110900478 -39883075 + L1MC4 LINE L1 7927 8013 -29 281 161 0 18 chr11 110900482 110900538 -39883015 - Alu SINE Alu 0 301 247 289 350 0 0 chr11 110900645 110900767 -39882786 + G-rich Low_complexity Low_complexity 1 122 0 1435 163 18 4 chr11 110900781 110901057 -39882496 - AluSx SINE Alu -30 282 3 698 268 34 5 chr11 110901059 110901264 -39882289 - MLT1C LTR MaLR -67 400 190 14312 133 27 41 chr11 110901274 110903239 -39880314 - Tigger1 DNA MER2_type -2 2416 490 853 158 0 8 chr11 110903239 110903366 -39880187 + FLAM_C SINE Alu 1 126 -7 14312 133 27 41 chr11 110903366 110903850 -39879703 - Tigger1 DNA MER2_type -1928 490 1 2243 81 35 0 chr11 110903907 110904191 -39879362 - AluSq SINE Alu -10 303 10 2272 75 0 0 chr11 110905719 110906023 -39877530 - AluSg SINE Alu 0 304 1 2196 114 0 13 chr11 110906812 110907120 -39876433 - AluSg SINE Alu -6 304 1 817 217 12 0 chr11 110907425 110907586 -39875967 - MER5A DNA MER1_type 0 189 27 210 224 0 0 chr11 110907609 110907658 -39875895 - L2 LINE L2 0 3313 3265 417 262 148 30 chr11 110907957 110908159 -39875394 + L1MC4 LINE L1 7653 7878 -164 1871 126 0 4 chr11 110908159 110908437 -39875116 - AluSg SINE Alu -9 301 25 1697 120 0 26 chr11 110908474 110908741 -39874812 + AluSx SINE Alu 1 260 -52 231 247 0 39 chr11 110908775 110908852 -39874701 - L1MC4 LINE L1 -1355 6687 6614 * 238 196 0 0 chr11 110908810 110908861 -39874692 + L1MC4 LINE L1 6652 6702 -1340 * 400 281 7 41 chr11 110908848 110908994 -39874559 + L1MC4 LINE L1 7902 8042 0 2110 108 0 3 chr11 110910117 110910403 -39873150 + AluSg SINE Alu 1 285 -25 240 35 0 0 chr11 110910403 110910432 -39873121 + (TA)n Simple_repeat Simple_repeat 1 29 0 283 208 0 0 chr11 110910959 110911012 -39872541 + MIR SINE MIR 209 261 -1 206 349 47 12 chr11 110911015 110911101 -39872452 - MIR SINE MIR -105 157 69 217 338 29 0 chr11 110911190 110911258 -39872295 + L2 LINE L2 3235 3304 -9 441 0 0 0 chr11 110911258 110911307 -39872246 + (TG)n Simple_repeat Simple_repeat 2 50 0 2332 99 0 0 chr11 110911445 110911749 -39871804 + AluSq SINE Alu 1 304 -9 226 241 0 63 chr11 110911749 110911828 -39871725 + MIR SINE MIR 133 206 -56 879 133 0 0 chr11 110912166 110912286 -39871267 + FLAM_C SINE Alu 7 126 -17 1815 131 29 11 chr11 110913272 110913547 -39870006 - AluSx SINE Alu -32 280 1 739 130 40 2 chr11 110913602 110913743 -39869810 + L1MB4 LINE L1 5858 6001 -170 1746 133 10 34 chr11 110915321 110915614 -39867939 - AluSx SINE Alu -26 286 1 201 253 12 36 chr11 110916581 110916664 -39866889 + (CGGG)n Simple_repeat Simple_repeat 4 84 0 22 35 0 0 chr11 110917074 110917103 -39866450 + GC_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr11 110917594 110917616 -39865937 + AT_rich Low_complexity Low_complexity 1 22 0 218 29 59 0 chr11 110918192 110918226 -39865327 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr11 110919734 110919755 -39863798 + AT_rich Low_complexity Low_complexity 1 21 0 2503 67 0 13 chr11 110920057 110920371 -39863182 - AluY SINE Alu -1 310 1 227 287 115 38 chr11 110920415 110920572 -39862981 + MIR SINE MIR 8 176 -86 1636 143 31 27 chr11 110920992 110921285 -39862268 - AluJb SINE Alu -8 304 11 698 88 33 155 chr11 110921300 110921481 -39862072 + L1MA8 LINE L1 6133 6291 0 2147 121 10 3 chr11 110923401 110923706 -39859847 - AluSx SINE Alu -5 307 1 2225 111 7 7 chr11 110924220 110924527 -39859026 + AluSx SINE Alu 1 307 -5 2010 113 0 4 chr11 110924804 110925078 -39858475 - AluSq SINE Alu -40 273 1 1685 181 10 7 chr11 110925417 110925720 -39857833 + AluJb SINE Alu 1 304 -8 2222 116 0 19 chr11 110925809 110926128 -39857425 - AluSq SINE Alu 0 313 1 927 206 0 0 chr11 110926134 110926309 -39857244 - FAM SINE Alu -5 44 1 2580 35 0 19 chr11 110926638 110926955 -39856598 - AluY SINE Alu 0 311 1 33 25 0 0 chr11 110927498 110927538 -39856015 + AT_rich Low_complexity Low_complexity 1 40 0 772 200 0 0 chr11 110927538 110927663 -39855890 - FLAM_C SINE Alu -17 126 2 1747 151 4 0 chr11 110927686 110927951 -39855602 + AluJb SINE Alu 24 289 -23 1258 128 5 35 chr11 110927960 110928163 -39855390 + AluSp SINE Alu 94 290 -23 29 28 0 0 chr11 110928168 110928204 -39855349 + AT_rich Low_complexity Low_complexity 1 36 0 246 372 88 34 chr11 110928581 110928877 -39854676 + L2 LINE L2 2247 2558 -756 21 0 0 0 chr11 110928884 110928905 -39854648 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr11 110928951 110928977 -39854576 + (TA)n Simple_repeat Simple_repeat 2 27 0 320 317 106 66 chr11 110929081 110929384 -39854169 + L1M2 LINE L1 819 1133 -5716 406 309 0 58 chr11 110929491 110929682 -39853871 + G-rich Low_complexity Low_complexity 1 180 0 2103 106 7 0 chr11 110929705 110929989 -39853564 - AluSx SINE Alu -26 286 1 4367 247 40 30 chr11 110929991 110931950 -39851603 - L1PBa LINE L1 -5219 1644 3 247 368 64 16 chr11 110932889 110933014 -39850539 - L2 LINE L2 0 3313 3183 849 215 9 55 chr11 110934014 110934233 -39849320 + AluJo SINE Alu 1 209 -103 189 0 0 0 chr11 110934585 110934606 -39848947 + (TA)n Simple_repeat Simple_repeat 2 22 0 2066 141 0 7 chr11 110934612 110934917 -39848636 - AluSx SINE Alu -9 303 1 34 65 0 0 chr11 110935134 110935196 -39848357 + AT_rich Low_complexity Low_complexity 1 62 0 2295 105 10 3 chr11 110935652 110935958 -39847595 - AluSq SINE Alu -5 308 1 1694 184 32 3 chr11 110936525 110936835 -39846718 - MER7A DNA MER2_type -1 345 29 2155 97 28 0 chr11 110937009 110937297 -39846256 - AluSc SINE Alu -13 296 1 772 273 103 4 chr11 110937645 110937792 -39845761 + L2 LINE L2 3002 3133 -180 2370 87 6 13 chr11 110937792 110938104 -39845449 - AluSp SINE Alu -3 310 1 772 273 103 4 chr11 110938104 110938198 -39845355 + L2 LINE L2 3133 3267 -46 807 297 29 0 chr11 110938953 110939192 -39844361 + MIR SINE MIR 11 256 -6 1999 142 7 7 chr11 110939389 110939698 -39843855 + AluSx SINE Alu 1 309 -3 1179 210 13 7 chr11 110939779 110940079 -39843474 - AluSx SINE Alu 0 302 1 2139 83 0 4 chr11 110940359 110940635 -39842918 - AluSg SINE Alu -35 275 1 2169 97 0 26 chr11 110940677 110940986 -39842567 - AluSp SINE Alu -12 301 1 314 23 23 0 chr11 110941391 110941434 -39842119 + (CAA)n Simple_repeat Simple_repeat 2 45 0 238 264 118 56 chr11 110941454 110941598 -39841955 + MIR3 SINE MIR 41 193 -15 2297 77 6 29 chr11 110942008 110942321 -39841232 - AluSq SINE Alu -6 307 2 21 0 0 0 chr11 110943162 110943183 -39840370 + AT_rich Low_complexity Low_complexity 1 21 0 338 292 36 68 chr11 110943272 110943656 -39839897 + L1MC5 LINE L1 7319 7690 -271 191 247 32 118 chr11 110944040 110944133 -39839420 + L2 LINE L2 3187 3271 -1 207 69 0 0 chr11 110945548 110945577 -39837976 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 25 0 0 0 chr11 110946472 110946497 -39837056 + AT_rich Low_complexity Low_complexity 1 25 0 346 309 80 19 chr11 110946774 110946936 -39836617 - MIR SINE MIR -78 184 13 2215 121 0 0 chr11 110947432 110947738 -39835815 - AluSx SINE Alu -6 306 1 211 171 0 0 chr11 110948963 110948998 -39834555 - L2 LINE L2 -21 3251 3217 225 188 12 150 chr11 110949048 110949128 -39834425 - MIR SINE MIR -84 124 56 5203 178 65 29 chr11 110949138 110950386 -39833167 - L1PBb LINE L1 -3660 2543 1341 2156 108 0 0 chr11 110950386 110950674 -39832879 - AluSg SINE Alu -20 290 3 5203 178 65 29 chr11 110950674 110950946 -39832607 - L1PBb LINE L1 -4862 1341 1080 312 70 0 0 chr11 110950946 110950989 -39832564 + (TG)n Simple_repeat Simple_repeat 2 44 0 5203 178 65 29 chr11 110950989 110951183 -39832370 - L1PBb LINE L1 -5123 1080 758 1458 187 191 25 chr11 110951199 110951669 -39831884 - LTR10A LTR ERV1 -61 548 1 5485 240 16 27 chr11 110951672 110953178 -39830375 - LTR10A-int LTR ERV1 -4 6645 5156 8738 107 27 15 chr11 110953260 110955481 -39828072 - LTR10A-int LTR ERV1 -3924 2972 712 654 238 56 115 chr11 110955903 110956542 -39827011 - LTR10A-int LTR ERV1 -6064 585 1 1698 130 53 66 chr11 110956551 110956928 -39826625 - LTR10A LTR ERV1 -61 548 177 1246 130 258 54 chr11 110956913 110957266 -39826287 - LTR10A LTR ERV1 -172 437 13 * 2005 139 3 7 chr11 110957344 110957647 -39825906 - AluSq SINE Alu -11 302 1 194 146 0 24 chr11 110957649 110957690 -39825863 + (TG)n Simple_repeat Simple_repeat 1 40 0 1151 157 0 16 chr11 110957690 110957875 -39825678 - AluSc SINE Alu -10 299 118 1434 184 11 14 chr11 110957881 110958158 -39825395 - L1PBb LINE L1 -5534 670 395 26 30 0 0 chr11 110958270 110958303 -39825250 + GC_rich Low_complexity Low_complexity 1 33 0 243 146 0 0 chr11 110958325 110958366 -39825187 + (A)n Simple_repeat Simple_repeat 1 41 0 436 308 88 25 chr11 110958645 110958885 -39824668 + MIR SINE MIR 2 256 -6 823 133 31 0 chr11 110959044 110959172 -39824381 - FLAM_C SINE Alu 0 133 2 955 125 6 24 chr11 110959288 110959456 -39824097 - AluSc SINE Alu -9 300 136 182 224 0 20 chr11 110959459 110959508 -39824045 + L3 LINE CR1 1529 1576 -1 2549 167 43 23 chr11 110960055 110960618 -39822935 - L1MB7 LINE L1 -9 6175 5602 24 0 0 0 chr11 110960702 110960726 -39822827 + AT_rich Low_complexity Low_complexity 1 24 0 398 238 129 0 chr11 110960996 110961097 -39822456 - L2 LINE L2 -4 3309 3196 278 281 16 0 chr11 110961304 110961368 -39822185 - L2 LINE L2 -4 3309 3245 273 279 137 50 chr11 110961384 110961545 -39822008 + MIR SINE MIR 81 255 -7 1877 146 6 22 chr11 110961545 110961860 -39821693 + AluJo SINE Alu 3 312 0 25 0 10 0 chr11 110961989 110962059 -39821494 + AT_rich Low_complexity Low_complexity 1 25 0 1252 139 67 30 chr11 110962065 110962332 -39821221 - Tigger7 DNA MER2_type 0 2587 2311 1969 109 0 0 chr11 110962359 110962615 -39820938 - AluSx SINE Alu -17 295 40 1064 231 47 0 chr11 110962682 110962937 -39820616 - Tigger7 DNA MER2_type -2219 268 2 2203 102 0 17 chr11 110963543 110963838 -39819715 - AluSx SINE Alu -13 299 10 1476 120 18 83 chr11 110965567 110965843 -39817710 + AluJo SINE Alu 6 263 -49 252 143 0 0 chr11 110965898 110965940 -39817613 + (A)n Simple_repeat Simple_repeat 1 42 0 436 308 88 25 chr11 110966219 110966459 -39817094 + MIR SINE MIR 2 256 -6 823 133 31 0 chr11 110966618 110966746 -39816807 - FLAM_C SINE Alu 0 133 2 1313 84 0 0 chr11 110966862 110967028 -39816525 - AluSc SINE Alu -8 301 136 182 224 0 20 chr11 110967031 110967080 -39816473 + L3 LINE CR1 1529 1576 -1 2519 167 43 25 chr11 110967627 110968191 -39815362 - L1MB7 LINE L1 -9 6175 5602 24 0 0 0 chr11 110968275 110968299 -39815254 + AT_rich Low_complexity Low_complexity 1 24 0 398 238 129 0 chr11 110968569 110968670 -39814883 - L2 LINE L2 -4 3309 3196 278 281 16 0 chr11 110968877 110968941 -39814612 - L2 LINE L2 -4 3309 3245 273 279 137 50 chr11 110968957 110969118 -39814435 + MIR SINE MIR 81 255 -7 1805 149 7 11 chr11 110969118 110969430 -39814123 + AluJo SINE Alu 3 313 0 25 0 10 0 chr11 110969561 110969631 -39813922 + AT_rich Low_complexity Low_complexity 1 25 0 1252 139 67 30 chr11 110969637 110969904 -39813649 - Tigger7 DNA MER2_type 0 2587 2311 1934 109 0 4 chr11 110969931 110970188 -39813365 - AluSx SINE Alu -17 295 40 1064 231 47 0 chr11 110970255 110970510 -39813043 - Tigger7 DNA MER2_type -465 268 2 2104 108 7 33 chr11 110971116 110971421 -39812132 - AluSg SINE Alu -13 297 1 2233 96 0 7 chr11 110971426 110971719 -39811834 - AluSc SINE Alu -11 298 8 1862 148 14 10 chr11 110972253 110972544 -39811009 - AluJb SINE Alu -20 292 1 341 343 37 46 chr11 110972683 110972899 -39810654 + L1ME LINE L1 5357 5570 -551 228 284 14 0 chr11 110972956 110973030 -39810523 + MLT1L LTR MaLR 5 79 -536 345 213 93 47 chr11 110974282 110974432 -39809121 + MIR SINE MIR 41 197 -65 279 0 0 0 chr11 110975275 110975306 -39808247 + (TG)n Simple_repeat Simple_repeat 2 32 0 1762 156 3 58 chr11 110975631 110975957 -39807596 + AluJb SINE Alu 1 308 -4 1257 248 53 3 chr11 110976164 110976467 -39807086 + MER70B LTR ERVL 115 432 -146 23 0 0 0 chr11 110977610 110977633 -39805920 + AT_rich Low_complexity Low_complexity 1 23 0 391 238 40 99 chr11 110978131 110978238 -39805315 - MER112 DNA MER1_type -6 254 142 2607 56 0 0 chr11 110978238 110978540 -39805013 + AluY SINE Alu 1 302 -9 1847 135 7 0 chr11 110978549 110978823 -39804730 + AluSx SINE Alu 24 299 -13 391 238 40 99 chr11 110978823 110978957 -39804596 - MER112 DNA MER1_type -126 134 18 21 0 0 0 chr11 110981354 110981375 -39802178 + AT_rich Low_complexity Low_complexity 1 21 0 6370 205 33 63 chr11 110981850 110982349 -39801204 - L1MC2 LINE L1 -54 6290 5777 187 43 0 0 chr11 110982349 110982372 -39801181 + (TTTTC)n Simple_repeat Simple_repeat 2 130 0 2054 123 0 3 chr11 110982372 110982657 -39800896 - AluSx SINE Alu -1 306 1 6370 205 33 63 chr11 110982657 110983277 -39800276 - L1MC2 LINE L1 -566 5778 5141 2273 80 14 0 chr11 110983277 110983565 -39799988 - AluSx SINE Alu -14 298 7 6370 205 33 63 chr11 110983565 110986000 -39797553 - L1MC2 LINE L1 -1203 5141 2841 2374 93 3 0 chr11 110986049 110986349 -39797204 - AluSg SINE Alu -9 301 1 993 161 134 106 chr11 110986391 110986535 -39797018 + AluJb SINE Alu 1 140 -162 2184 68 14 3 chr11 110986535 110986830 -39796723 + AluY SINE Alu 1 298 -13 993 161 134 106 chr11 110986830 110986977 -39796576 + AluJb SINE Alu 140 300 -2 291 271 12 0 chr11 110987223 110987308 -39796245 + MIR SINE MIR 177 262 0 227 268 110 12 chr11 110988133 110988215 -39795338 + MER21B LTR ERV1 1 90 -773 2075 245 104 18 chr11 110988237 110989005 -39794548 + MER21B LTR ERV1 19 852 -11 1790 205 43 17 chr11 110989463 110989931 -39793622 + L1MB7 LINE L1 5665 6144 -40 1049 151 6 6 chr11 110990041 110990207 -39793346 + AluJo SINE Alu 126 291 -21 405 78 125 0 chr11 110991121 110991185 -39792368 + MIR SINE MIR 91 162 -100 21 36 0 0 chr11 110992450 110992478 -39791075 + AT_rich Low_complexity Low_complexity 1 28 0 540 283 108 19 chr11 110992483 110992695 -39790858 - MIR SINE MIR -14 248 18 192 40 0 0 chr11 110992796 110992821 -39790732 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2250 111 0 10 chr11 110994217 110994523 -39789030 + AluSx SINE Alu 1 303 -9 395 330 123 6 chr11 110995622 110995819 -39787734 - MIR SINE MIR -6 256 39 198 286 0 16 chr11 110996298 110996361 -39787192 - L2 LINE L2 -1 3312 3251 21 0 0 0 chr11 110996771 110996792 -39786761 + AT_rich Low_complexity Low_complexity 1 21 0 2270 107 3 10 chr11 110996892 110997201 -39786352 - AluSp SINE Alu -6 307 1 2165 117 0 22 chr11 110997394 110997710 -39785843 - AluSx SINE Alu -3 309 1 216 158 0 0 chr11 110997893 110997931 -39785622 + CT-rich Low_complexity Low_complexity 2 39 0 1508 231 10 10 chr11 110997931 110998243 -39785310 - AluJo SINE Alu 0 312 1 801 246 41 9 chr11 110999275 110999495 -39784058 + MIR SINE MIR 2 228 -34 228 314 108 0 chr11 110999538 110999640 -39783913 + L2 LINE L2 3104 3216 -56 194 0 39 0 chr11 111000142 111000168 -39783385 + (TG)n Simple_repeat Simple_repeat 1 27 0 824 269 64 5 chr11 111001104 111001323 -39782230 - MIR SINE MIR -9 253 22 1853 164 145 19 chr11 111002043 111002457 -39781096 - MER31B LTR ERV1 0 466 1 504 211 18 0 chr11 111002688 111002797 -39780756 - MIR SINE MIR -21 241 131 1689 156 13 22 chr11 111002797 111003112 -39780441 - Tigger3(Golem) DNA MER2_type -2 3027 2716 702 202 0 0 chr11 111003167 111003286 -39780267 - MIR SINE MIR -131 131 13 285 29 0 0 chr11 111003629 111003663 -39779890 + (T)n Simple_repeat Simple_repeat 1 34 0 1532 100 12 25 chr11 111003681 111003921 -39779632 + L1PA10 LINE L1 5932 6168 0 2184 115 0 3 chr11 111004502 111004798 -39778755 - AluSx SINE Alu -17 295 1 218 179 0 107 chr11 111004910 111004966 -39778587 - L2 LINE L2 -2 3311 3262 393 321 26 36 chr11 111005065 111005258 -39778295 + MIR3 SINE MIR 5 195 -13 2283 81 3 14 chr11 111005523 111005819 -39777734 - AluSg SINE Alu -17 293 1 347 315 11 0 chr11 111005832 111005924 -39777629 - MER5A DNA MER1_type -93 96 4 2266 119 0 0 chr11 111006762 111007056 -39776497 - AluSx SINE Alu -18 294 1 279 336 34 42 chr11 111007069 111007188 -39776365 + L2 LINE L2 3149 3266 -6 180 0 0 0 chr11 111008793 111008813 -39774740 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2300 92 3 0 chr11 111009797 111010092 -39773461 + AluSp SINE Alu 1 296 -17 2213 104 3 19 chr11 111010614 111010921 -39772632 + AluSx SINE Alu 1 302 -10 1421 215 34 7 chr11 111011820 111012113 -39771440 + AluJo SINE Alu 1 301 -11 2382 89 7 0 chr11 111013084 111013388 -39770165 + AluSp SINE Alu 1 306 -7 231 289 0 0 chr11 111013389 111013479 -39770074 - L1MC4 LINE L1 -1339 6703 6614 231 167 0 0 chr11 111013482 111013524 -39770029 + (TA)n Simple_repeat Simple_repeat 1 42 0 2219 120 0 0 chr11 111013663 111013963 -39769590 + AluSx SINE Alu 1 300 -12 38 0 0 0 chr11 111013967 111014005 -39769548 + AT_rich Low_complexity Low_complexity 1 38 0 277 289 202 0 chr11 111014033 111014147 -39769406 - L2 LINE L2 -3 3310 3174 352 287 101 8 chr11 111014313 111014442 -39769111 - MER82 DNA MER2_type -6 647 507 582 316 21 11 chr11 111015438 111015628 -39767925 - L2 LINE L2 -1 3312 3121 246 274 69 69 chr11 111016873 111017056 -39766497 + MER5B DNA MER1_type 7 178 0 1912 149 0 0 chr11 111017073 111017374 -39766179 + AluJb SINE Alu 1 301 0 188 326 70 12 chr11 111017955 111018041 -39765512 - L2 LINE L2 -187 3085 2995 181 302 169 41 chr11 111018410 111018582 -39764971 - L2 LINE L2 -792 2522 2329 358 369 35 0 chr11 111018678 111018819 -39764734 + MIR SINE MIR 12 157 -105 203 88 29 0 chr11 111019048 111019082 -39764471 + (GA)n Simple_repeat Simple_repeat 2 36 0 425 261 60 80 chr11 111019807 111020006 -39763547 + MIR SINE MIR 11 205 -57 1513 155 94 55 chr11 111020755 111020916 -39762637 + THE1C LTR MaLR 1 154 -221 2386 78 0 3 chr11 111020916 111021211 -39762342 + AluY SINE Alu 2 295 -16 1513 155 94 55 chr11 111021211 111021410 -39762143 + THE1C LTR MaLR 154 375 0 21 0 0 0 chr11 111022138 111022159 -39761394 + AT_rich Low_complexity Low_complexity 1 21 0 2047 142 13 93 chr11 111023284 111023672 -39759881 - LTR18A LTR ERVL 0 357 1 195 321 116 18 chr11 111026104 111026216 -39757337 - L2 LINE L2 -1 3312 3190 276 281 128 43 chr11 111026383 111026664 -39756889 - HAL1 LINE L1 -169 2338 2034 2388 75 0 7 chr11 111026667 111026973 -39756580 - AluY SINE Alu -7 304 1 21 57 0 0 chr11 111027210 111027245 -39756308 + AT_rich Low_complexity Low_complexity 1 35 0 1884 138 76 0 chr11 111027709 111027828 -39755725 + AluJb SINE Alu 1 110 -202 201 74 0 0 chr11 111027828 111027855 -39755698 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1884 138 76 0 chr11 111027855 111028025 -39755528 + AluJb SINE Alu 110 312 0 386 158 24 49 chr11 111028373 111028455 -39755098 - MER5A DNA MER1_type -76 113 34 243 219 82 41 chr11 111028395 111028468 -39755085 + MER5A DNA MER1_type 105 180 -9 * 304 309 27 27 chr11 111029487 111029597 -39753956 - L2 LINE L2 -237 3035 2926 342 271 234 0 chr11 111029674 111029781 -39753772 + MIR SINE MIR 109 240 -22 13378 136 21 49 chr11 111029900 111030678 -39752875 + Tigger1 DNA MER2_type 1 799 -1619 2324 97 3 7 chr11 111030678 111030986 -39752567 - AluSg SINE Alu -3 307 1 13378 136 21 49 chr11 111030986 111032693 -39750860 + Tigger1 DNA MER2_type 799 2418 0 185 304 88 48 chr11 111033946 111034071 -39749482 - L2 LINE L2 -2054 1260 1131 1337 179 4 0 chr11 111034859 111035093 -39748460 - MER46A DNA MER2_type -1 235 1 212 163 0 0 chr11 111035513 111035556 -39747997 + T-rich Low_complexity Low_complexity 1 43 0 2112 119 16 26 chr11 111036336 111036647 -39746906 - AluSx SINE Alu -4 308 1 384 160 170 0 chr11 111036897 111036997 -39746556 - L2 LINE L2 -83 3230 3114 744 121 0 9 chr11 111037030 111037146 -39746407 + FLAM_C SINE Alu 19 133 -10 756 324 8 0 chr11 111037152 111037402 -39746151 - L2 LINE L2 -976 2338 2087 1237 191 76 69 chr11 111037921 111038209 -39745344 - AluJo SINE Alu -22 290 1 23 33 0 0 chr11 111038325 111038355 -39745198 + AT_rich Low_complexity Low_complexity 1 30 0 1571 125 121 21 chr11 111038451 111038731 -39744822 - AluJb SINE Alu -4 308 1 227 135 0 0 chr11 111038885 111038922 -39744631 + Charlie5 DNA MER1_type 2549 2585 -27 453 314 52 35 chr11 111038934 111039163 -39744390 - MIR SINE MIR -1 261 29 3874 139 18 5 chr11 111039377 111040004 -39743549 - MER41B LTR ERV1 0 635 1 24 0 0 0 chr11 111040511 111040535 -39743018 + AT_rich Low_complexity Low_complexity 1 24 0 1799 156 7 0 chr11 111040737 111041067 -39742486 - AluSq SINE Alu 0 332 1 2281 118 0 0 chr11 111041110 111041415 -39742138 - AluSq SINE Alu -8 305 1 317 173 58 93 chr11 111042273 111042315 -39741238 - L1MD1 LINE L1 0 6242 6200 2871 3 0 0 chr11 111042315 111042624 -39740929 - AluYb8 SINE Alu -9 309 1 317 173 58 93 chr11 111042624 111042720 -39740833 - L1MD1 LINE L1 -42 6200 6109 711 266 171 37 chr11 111043472 111043592 -39739961 + L1M4 LINE L1 4046 4149 -1997 1763 166 49 0 chr11 111043592 111043876 -39739677 + AluJb SINE Alu 1 298 -14 711 266 171 37 chr11 111043876 111044164 -39739389 + L1M4 LINE L1 4149 4509 -1637 203 0 0 36 chr11 111044856 111044884 -39738669 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2018 131 0 0 chr11 111044893 111045175 -39738378 - AluSx SINE Alu -30 282 1 2115 137 17 0 chr11 111045419 111045719 -39737834 - AluSx SINE Alu -7 305 1 825 161 0 22 chr11 111045883 111046020 -39737533 - AluJb SINE Alu -178 134 1 1769 278 109 44 chr11 111046254 111047083 -39736470 - L2 LINE L2 0 3313 2378 872 222 69 0 chr11 111047083 111047286 -39736267 - MER20 DNA MER1_type -1 218 2 1769 278 109 44 chr11 111047286 111047564 -39735989 - L2 LINE L2 -935 2378 2120 1956 123 7 14 chr11 111047832 111048125 -39735428 + AluSg SINE Alu 1 291 -19 1362 92 0 32 chr11 111048126 111048311 -39735242 + AluSc SINE Alu 131 309 0 2409 135 54 10 chr11 111048391 111048799 -39734754 - MSTA LTR MaLR -2 426 1 210 305 152 48 chr11 111048841 111049110 -39734443 + L2 LINE L2 2968 3264 -49 4296 151 4 1 chr11 111049556 111050276 -39733277 - L1MB2 LINE L1 0 6171 5450 753 218 5 62 chr11 111051029 111051222 -39732331 - MER20 DNA MER1_type -2 217 36 490 284 175 9 chr11 111051529 111051740 -39731813 - MIR SINE MIR -1 261 16 279 0 0 0 chr11 111052676 111052707 -39730846 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 215 322 82 68 chr11 111053103 111053249 -39730304 - L2 LINE L2 -614 2700 2553 566 282 143 5 chr11 111053454 111053670 -39729883 + MIR SINE MIR 7 252 -10 210 37 0 0 chr11 111054864 111054891 -39728662 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 207 186 0 0 chr11 111055530 111055573 -39727980 + A-rich Low_complexity Low_complexity 1 43 0 182 277 146 39 chr11 111056888 111057018 -39726535 - MIR3 SINE MIR -61 147 4 181 275 150 50 chr11 111058781 111058901 -39724652 + L2 LINE L2 3141 3272 0 202 333 0 0 chr11 111059986 111060043 -39723510 + CT-rich Low_complexity Low_complexity 4 60 0 2113 130 20 0 chr11 111060922 111061222 -39722331 - AluSx SINE Alu -6 306 1 1019 172 0 0 chr11 111062597 111062771 -39720782 - FRAM SINE Alu -2 174 1 217 309 62 0 chr11 111062773 111062854 -39720699 - MIR SINE MIR -58 150 65 317 247 153 29 chr11 111062873 111063043 -39720510 - MLT1J LTR MaLR -18 493 303 959 154 0 6 chr11 111063138 111063294 -39720259 + FRAM SINE Alu 6 160 -16 395 288 163 0 chr11 111064371 111064531 -39719022 + MER5A DNA MER1_type 4 189 0 321 354 25 12 chr11 111064979 111065140 -39718413 + MIR SINE MIR 24 186 -76 453 310 27 16 chr11 111066242 111066426 -39717127 + MLT1L LTR MaLR 430 615 0 753 265 130 30 chr11 111067266 111067807 -39715746 - MLT1G1 LTR MaLR 0 595 10 27 0 0 0 chr11 111067823 111067850 -39715703 + AT_rich Low_complexity Low_complexity 1 27 0 494 293 66 59 chr11 111067958 111068214 -39715339 - MIR SINE MIR -2 260 3 189 74 0 0 chr11 111068762 111068789 -39714764 + (T)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr11 111068858 111068887 -39714666 + AT_rich Low_complexity Low_complexity 1 29 0 455 258 32 32 chr11 111069991 111070115 -39713438 - MIR3 SINE MIR -21 187 64 234 116 0 0 chr11 111070621 111070664 -39712889 + (T)n Simple_repeat Simple_repeat 1 43 0 542 214 112 20 chr11 111070973 111071267 -39712286 - L1MC4 LINE L1 -1 8041 7691 251 308 52 23 chr11 111071350 111071522 -39712031 - MER41E LTR ERV1 -78 434 258 279 0 0 0 chr11 111071586 111071617 -39711936 + (T)n Simple_repeat Simple_repeat 1 31 0 225 0 0 0 chr11 111071846 111071871 -39711682 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 822 230 182 0 chr11 111072003 111072299 -39711254 - L1MC4 LINE L1 -452 7590 7241 1541 184 52 24 chr11 111072344 111072655 -39710898 + AluJb SINE Alu 1 312 0 25 0 0 0 chr11 111073220 111073245 -39710308 + AT_rich Low_complexity Low_complexity 1 25 0 678 166 40 26 chr11 111073550 111073701 -39709852 + 7SK RNA RNA 1 153 -40 325 153 17 0 chr11 111073718 111073777 -39709776 + 7SK RNA RNA 126 185 -8 343 311 112 50 chr11 111075482 111075904 -39707649 + L2 LINE L2 2766 3213 -100 2437 231 11 4 chr11 111076600 111077307 -39706246 + L1PB1 LINE L1 2849 3560 -2586 5440 171 15 2 chr11 111077311 111079007 -39704546 + L1PB1 LINE L1 4079 5791 -360 182 204 0 20 chr11 111079007 111079056 -39704497 + (TA)n Simple_repeat Simple_repeat 1 48 0 2487 109 11 3 chr11 111079063 111079429 -39704124 + L1PB1 LINE L1 5783 6151 0 358 353 55 78 chr11 111080461 111080807 -39702746 - L2 LINE L2 -10 3262 2925 2551 147 20 18 chr11 111080842 111081299 -39702254 - LTR32 LTR ERVL -5 466 9 1981 125 0 7 chr11 111082412 111082691 -39700862 - AluSx SINE Alu -1 311 35 811 139 7 42 chr11 111084180 111084324 -39699229 - Tigger3(Golem) DNA MER2_type -119 2910 2772 717 168 18 0 chr11 111084321 111084434 -39699119 - Tigger3(Golem) DNA MER2_type -2887 142 28 * 2340 112 0 0 chr11 111084789 111085101 -39698452 - AluSx SINE Alu 0 312 1 1793 197 67 0 chr11 111085246 111085607 -39697946 + Tigger3b DNA MER2_type 2 386 -845 449 228 0 0 chr11 111085611 111085690 -39697863 + Tigger3b DNA MER2_type 1153 1231 -1 234 224 90 0 chr11 111085707 111085774 -39697779 + MER63A DNA MER1_type 1 73 -137 514 252 48 0 chr11 111085800 111085947 -39697606 + MER63A DNA MER1_type 57 210 0 181 341 34 23 chr11 111087781 111087869 -39695684 + L2 LINE L2 2710 2798 -516 255 294 108 20 chr11 111087943 111088045 -39695508 - MIR SINE MIR -73 189 79 202 219 24 0 chr11 111090724 111090765 -39692788 - L2 LINE L2 -16 3256 3215 24 67 0 0 chr11 111090767 111090812 -39692741 + AT_rich Low_complexity Low_complexity 1 45 0 247 322 43 0 chr11 111091605 111091720 -39691833 + L2 LINE L2 2428 2547 -767 210 296 0 37 chr11 111091813 111091894 -39691659 + MIR SINE MIR 185 262 0 342 0 0 0 chr11 111092006 111092044 -39691509 + (TG)n Simple_repeat Simple_repeat 2 39 0 342 219 0 0 chr11 111092503 111092576 -39690977 - L1MC4 LINE L1 -4 8038 7966 23 54 0 0 chr11 111093897 111093934 -39689619 + AT_rich Low_complexity Low_complexity 1 37 0 589 338 125 60 chr11 111094795 111095994 -39687559 - L2 LINE L2 -1 3271 1993 294 250 128 55 chr11 111096045 111096209 -39687344 - MIR SINE MIR -70 192 17 2157 95 3 23 chr11 111096668 111096973 -39686580 + AluSp SINE Alu 1 299 -14 207 0 0 0 chr11 111096979 111097002 -39686551 + (CA)n Simple_repeat Simple_repeat 2 24 0 318 50 0 0 chr11 111097862 111097902 -39685651 - MADE1 DNA Mariner -37 43 4 2243 95 10 0 chr11 111098107 111098401 -39685152 - AluSx SINE Alu -15 297 1 614 193 78 18 chr11 111099319 111099485 -39684068 + L1 LINE L1 4278 4453 -1693 4912 148 68 12 chr11 111099495 111100381 -39683172 - Tigger1 DNA MER2_type -8 2410 1475 1906 132 167 16 chr11 111100381 111100753 -39682800 - MSTA LTR MaLR 0 428 1 8373 156 33 6 chr11 111100754 111102195 -39681358 - Tigger1 DNA MER2_type -936 1482 2 626 299 48 0 chr11 111102321 111102488 -39681065 - MIR SINE MIR -36 226 52 481 322 55 5 chr11 111102650 111102849 -39680704 + MIR SINE MIR 54 262 0 247 65 0 0 chr11 111103509 111103540 -39680013 + Alu SINE Alu 167 197 -105 21 0 0 0 chr11 111105125 111105146 -39678407 + AT_rich Low_complexity Low_complexity 1 21 0 2178 125 3 3 chr11 111105183 111105495 -39678058 + AluSx SINE Alu 1 312 0 212 284 75 75 chr11 111105643 111105666 -39677887 - L3 LINE CR1 -366 1211 1189 2224 108 3 0 chr11 111105666 111105962 -39677591 - AluSp SINE Alu -16 297 1 212 284 75 75 chr11 111105962 111106072 -39677481 - L3 LINE CR1 -387 1190 1078 183 42 0 0 chr11 111106303 111106327 -39677226 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1860 124 12 0 chr11 111106329 111106587 -39676966 - AluSx SINE Alu -26 286 26 191 236 42 14 chr11 111106660 111106732 -39676821 - L3 LINE CR1 -858 719 646 189 363 105 40 chr11 111106756 111106880 -39676673 - L2 LINE L2 -32 3240 3109 345 313 134 37 chr11 111107184 111107401 -39676152 + MER112 DNA MER1_type 15 252 -8 997 233 9 22 chr11 111107569 111107801 -39675752 - MIR SINE MIR -31 231 3 1299 204 179 13 chr11 111107928 111108320 -39675233 - MSTB2 LTR MaLR 0 457 1 259 194 292 14 chr11 111108955 111108993 -39674560 + MER58B DNA MER1_type 1 27 -188 315 0 0 0 chr11 111108993 111109028 -39674525 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 414 0 0 0 chr11 111109027 111109073 -39674480 + (TG)n Simple_repeat Simple_repeat 1 46 0 259 194 292 14 chr11 111109028 111109106 -39674447 + MER58B DNA MER1_type 27 92 -123 242 188 31 0 chr11 111109107 111109171 -39674382 + T-rich Low_complexity Low_complexity 1 66 0 189 121 0 0 chr11 111109282 111109315 -39674238 + (CTGGGG)n Simple_repeat Simple_repeat 1 33 0 874 276 9 4 chr11 111109737 111109965 -39673588 + MER58B DNA MER1_type 112 340 -1 209 416 0 0 chr11 111111528 111111617 -39671936 + MIR SINE MIR 20 108 -154 2326 100 0 0 chr11 111111648 111111947 -39671606 + AluSg SINE Alu 5 303 -7 1305 90 0 0 chr11 111112046 111112212 -39671341 - AluSp SINE Alu -11 302 137 28 0 0 0 chr11 111112964 111112992 -39670561 + AT_rich Low_complexity Low_complexity 1 28 0 510 248 201 7 chr11 111113000 111113149 -39670404 + MER5A DNA MER1_type 12 189 0 202 318 112 28 chr11 111113891 111113998 -39669555 + L2 LINE L2 3111 3226 -46 8766 183 25 6 chr11 111114025 111115739 -39667814 - L1PB1 LINE L1 0 6151 4360 281 24 49 0 chr11 111115739 111115780 -39667773 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 8766 183 25 6 chr11 111115780 111117011 -39666542 - L1PB1 LINE L1 -1791 4360 3153 218 330 107 19 chr11 111117119 111117222 -39666331 + L2 LINE L2 3111 3222 -50 2130 128 0 6 chr11 111117249 111117562 -39665991 - AluSq SINE Alu -2 311 1 189 74 0 0 chr11 111118222 111118249 -39665304 + (TTG)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr11 111119527 111119555 -39663998 + AT_rich Low_complexity Low_complexity 1 28 0 227 278 130 28 chr11 111120265 111120373 -39663180 + L3 LINE CR1 1454 1572 -5 203 241 120 120 chr11 111121119 111121227 -39662326 - L2 LINE L2 -20 3252 3145 672 304 32 46 chr11 111121549 111121894 -39661659 + LTR16A LTR ERVL 3 342 -108 183 254 0 51 chr11 111123008 111123067 -39660486 + L2 LINE L2 3216 3271 -1 1144 222 51 75 chr11 111123133 111123507 -39660046 + MLT1A1 LTR MaLR 1 365 0 466 310 97 32 chr11 111124309 111124525 -39659028 - MIR SINE MIR -17 245 16 2311 112 0 3 chr11 111125359 111125662 -39657891 - AluSx SINE Alu -10 302 1 465 212 71 0 chr11 111126789 111126888 -39656665 - L3b LINE CR1 -196 1387 1282 270 0 0 0 chr11 111127078 111127108 -39656445 + (TG)n Simple_repeat Simple_repeat 2 31 0 22 35 0 0 chr11 111127537 111127566 -39655987 + AT_rich Low_complexity Low_complexity 1 29 0 189 322 110 25 chr11 111128998 111129116 -39654437 - MIR3 SINE MIR -42 166 39 243 0 0 0 chr11 111129140 111129167 -39654386 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 273 175 0 0 chr11 111129217 111129257 -39654296 - MER20 DNA MER1_type -1 218 179 180 0 0 0 chr11 111129413 111129433 -39654120 + (T)n Simple_repeat Simple_repeat 1 20 0 340 327 47 23 chr11 111129517 111129731 -39653822 - MLT1J LTR MaLR -255 256 38 180 176 0 0 chr11 111129747 111129762 -39653791 + T-rich Low_complexity Low_complexity 1 15 -36 23379 65 1 1 chr11 111129762 111133617 -39649936 - L1PA6 LINE L1 -2 6152 2297 180 176 0 0 chr11 111133617 111133652 -39649901 + T-rich Low_complexity Low_complexity 14 51 0 11812 138 16 20 chr11 111133652 111135959 -39647594 - L1PA6 LINE L1 -3821 2325 11 459 0 0 0 chr11 111137037 111137088 -39646465 + (CA)n Simple_repeat Simple_repeat 1 51 0 26 30 0 0 chr11 111137148 111137181 -39646372 + AT_rich Low_complexity Low_complexity 1 33 0 2997 77 34 29 chr11 111137583 111137641 -39645912 - MLT2A1 LTR ERVL 0 444 388 435 38 0 0 chr11 111137641 111137694 -39645859 + (TA)n Simple_repeat Simple_repeat 1 53 0 2997 77 34 29 chr11 111137694 111138077 -39645476 - MLT2A1 LTR ERVL -56 388 1 2367 100 0 10 chr11 111138166 111138476 -39645077 - AluSx SINE Alu -3 309 3 256 244 23 35 chr11 111138477 111138563 -39644990 + CT-rich Low_complexity Low_complexity 1 85 0 347 309 43 31 chr11 111138655 111138817 -39644736 + MIR SINE MIR 20 183 -79 185 273 15 45 chr11 111138872 111138938 -39644615 + L2 LINE L2 3209 3272 0 261 293 125 19 chr11 111139114 111139322 -39644231 + HAL1 LINE L1 2270 2499 -8 1667 288 75 39 chr11 111139322 111139628 -39643925 - HAL1 LINE L1 -228 2279 1985 1539 178 4 4 chr11 111139628 111139892 -39643661 + AluSx SINE Alu 3 266 -46 1667 288 75 39 chr11 111139892 111140615 -39642938 - HAL1 LINE L1 -522 1985 1213 493 287 60 28 chr11 111140879 111141290 -39642263 - L1ME LINE L1 -460 5702 5269 4828 153 38 17 chr11 111142245 111143265 -39640288 - L1PB4 LINE L1 -61 6095 5042 2097 106 40 3 chr11 111143265 111143566 -39639987 - AluSq SINE Alu -1 312 1 4828 153 38 17 chr11 111143566 111143784 -39639769 - L1PB4 LINE L1 -1114 5042 4830 1937 154 0 0 chr11 111147858 111148162 -39635391 - AluSx SINE Alu 0 308 5 261 0 0 0 chr11 111148441 111148470 -39635083 + (CAA)n Simple_repeat Simple_repeat 2 30 0 26 30 0 0 chr11 111148996 111149029 -39634524 + AT_rich Low_complexity Low_complexity 1 33 0 232 366 45 9 chr11 111149434 111149546 -39634007 - L3b LINE CR1 -68 1515 1400 328 338 88 4 chr11 111150194 111150422 -39633131 + L1ME4a LINE L1 5122 5368 -778 663 246 83 56 chr11 111150499 111150942 -39632611 + L1ME4a LINE L1 5480 5934 -187 333 0 0 0 chr11 111150947 111150984 -39632569 + (TG)n Simple_repeat Simple_repeat 2 38 0 1971 152 10 0 chr11 111151503 111151800 -39631753 - AluSx SINE Alu -12 300 1 2888 170 56 4 chr11 111152862 111153396 -39630157 - MER68 LTR ERV1 0 562 1 775 158 0 65 chr11 111153494 111153633 -39629920 - FLAM_C SINE Alu -3 130 1 588 267 91 5 chr11 111153728 111153915 -39629638 - MER63A DNA MER1_type 0 210 8 725 224 8 0 chr11 111154220 111154354 -39629199 - Tigger2 DNA MER2_type -10 2708 2574 375 23 0 0 chr11 111155134 111155178 -39628375 + (TA)n Simple_repeat Simple_repeat 2 45 0 243 0 0 0 chr11 111155178 111155205 -39628348 + (T)n Simple_repeat Simple_repeat 1 27 0 183 100 0 0 chr11 111155233 111155263 -39628290 + (TG)n Simple_repeat Simple_repeat 2 31 0 1494 172 16 83 chr11 111155650 111156023 -39627530 + L1MC2 LINE L1 5988 6335 -9 2069 124 0 0 chr11 111158308 111158623 -39624930 + AluSx SINE Alu 1 315 0 2197 122 0 13 chr11 111158743 111159055 -39624498 - AluSx SINE Alu -4 308 1 642 196 68 79 chr11 111159187 111159379 -39624174 + MER33 DNA MER1_type 60 250 -2335 2143 130 0 0 chr11 111159379 111159678 -39623875 + AluSx SINE Alu 1 299 -13 642 196 68 79 chr11 111159678 111159750 -39623803 + MER33 DNA MER1_type 250 321 -3 399 250 217 17 chr11 111160108 111160288 -39623265 - MIR SINE MIR -7 255 40 328 298 88 28 chr11 111160498 111160679 -39622874 + MIR SINE MIR 56 247 -15 3344 210 56 18 chr11 111162218 111162236 -39621317 - L1MB7 LINE L1 0 6184 6168 1751 180 35 0 chr11 111162236 111162525 -39621028 + AluJb SINE Alu 1 299 -13 3344 210 56 18 chr11 111162525 111162981 -39620572 - L1MB7 LINE L1 -16 6168 5731 1756 152 55 36 chr11 111162981 111163311 -39620242 - MER1B DNA MER1_type 0 337 2 3344 210 56 18 chr11 111163311 111163829 -39619724 - L1MB7 LINE L1 -453 5731 5150 1533 181 36 18 chr11 111164844 111165175 -39618378 - MER46B DNA MER2_type -10 226 15 23 0 0 0 chr11 111167321 111167344 -39616209 + AT_rich Low_complexity Low_complexity 1 23 0 1367 142 54 0 chr11 111167411 111167672 -39615881 + L1MA9 LINE L1 6037 6311 -1 2195 96 14 0 chr11 111167712 111168003 -39615550 - AluSp SINE Alu -18 295 1 558 183 0 10 chr11 111168191 111168295 -39615258 + U13 snRNA snRNA 1 103 -1 33 43 0 0 chr11 111168298 111168345 -39615208 + AT_rich Low_complexity Low_complexity 1 47 0 198 0 0 0 chr11 111169574 111169596 -39613957 + (CA)n Simple_repeat Simple_repeat 1 22 0 1398 170 112 4 chr11 111169774 111170051 -39613502 + AluJb SINE Alu 1 307 -5 22 0 0 0 chr11 111171327 111171349 -39612204 + AT_rich Low_complexity Low_complexity 1 22 0 572 223 27 18 chr11 111172404 111172580 -39610973 - L1MA10 LINE L1 -2 6332 5991 220 324 135 18 chr11 111173074 111173244 -39610309 + MIR SINE MIR 20 209 -53 1193 312 37 19 chr11 111174692 111175363 -39608190 - L2 LINE L2 -2 3311 2630 230 348 88 7 chr11 111175375 111175544 -39608009 - MIR SINE MIR -67 141 11 272 266 78 31 chr11 111176463 111176591 -39606962 - MIR3 SINE MIR -9 199 66 530 78 13 0 chr11 111177049 111177126 -39606427 + MADE1 DNA Mariner 1 78 -2 14257 143 20 8 chr11 111178477 111180866 -39602687 - Tigger1 DNA MER2_type 0 2418 1 461 308 27 49 chr11 111181050 111181274 -39602279 - L1 LINE L1 -1700 4446 4228 611 264 51 6 chr11 111181307 111181485 -39602068 + MIR SINE MIR 71 256 -6 32 0 0 0 chr11 111181621 111181653 -39601900 + AT_rich Low_complexity Low_complexity 1 32 0 220 316 26 0 chr11 111182726 111182802 -39600751 - L2 LINE L2 -6 3266 3189 720 229 186 11 chr11 111183115 111183390 -39600163 + MER5C DNA MER1_type 2 324 0 255 79 0 0 chr11 111184212 111184250 -39599303 + (A)n Simple_repeat Simple_repeat 1 38 0 23 0 0 0 chr11 111184267 111184290 -39599263 + AT_rich Low_complexity Low_complexity 1 23 0 2416 87 7 0 chr11 111184290 111184600 -39598953 - AluSx SINE Alu 0 312 1 249 298 65 32 chr11 111184772 111184896 -39598657 + MIR SINE MIR 26 153 -109 210 320 62 16 chr11 111185905 111186033 -39597520 - L2 LINE L2 -1323 1991 1858 428 314 7 15 chr11 111186044 111186181 -39597372 + MER5A DNA MER1_type 54 189 0 272 240 70 0 chr11 111186714 111186814 -39596739 - L1ME4a LINE L1 -44 6077 5971 1076 185 97 13 chr11 111186823 111187121 -39596432 - Charlie1 DNA MER1_type 0 2761 2439 278 261 87 0 chr11 111187279 111187348 -39596205 + L2 LINE L2 3198 3272 0 1490 181 82 14 chr11 111187586 111187878 -39595675 + AluJb SINE Alu 1 312 0 608 299 132 45 chr11 111189845 111190424 -39593129 - L2 LINE L2 -103 3169 2537 334 311 37 30 chr11 111190543 111190707 -39592846 + Charlie8 DNA MER1_type 107 271 -2146 533 229 177 0 chr11 111190965 111191157 -39592396 + L1ME3A LINE L1 5944 6169 -1 235 219 0 0 chr11 111191480 111191521 -39592032 + AluJ/monomer SINE Alu 10 50 -83 405 0 0 0 chr11 111191537 111191582 -39591971 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2234 86 0 0 chr11 111191582 111191860 -39591693 + AluSc SINE Alu 1 278 -31 24 53 0 0 chr11 111192118 111192156 -39591397 + AT_rich Low_complexity Low_complexity 1 38 0 1274 163 0 0 chr11 111192156 111192359 -39591194 - MER2 DNA MER2_type -140 205 3 279 73 24 0 chr11 111193194 111193235 -39590318 - MER58 DNA MER1_type -6 2414 2373 663 149 51 82 chr11 111198423 111198618 -39584935 + L1MC3 LINE L1 6902 7090 -695 311 267 12 23 chr11 111198636 111198722 -39584831 + MLT1F1 LTR MaLR 41 125 -442 1892 193 22 22 chr11 111198732 111199097 -39584456 + L1MD3 LINE L1 7418 7786 -209 2180 79 7 4 chr11 111199097 111199424 -39584129 + AluSq SINE Alu 4 331 0 1892 193 22 22 chr11 111199424 111199471 -39584082 + L1MD3 LINE L1 7785 7831 -164 2155 87 50 3 chr11 111200729 111201027 -39582526 - AluSx SINE Alu 0 312 1 222 224 104 15 chr11 111201070 111201137 -39582416 - MIR3 SINE MIR -21 187 115 350 360 0 43 chr11 111201679 111201818 -39581735 - MIR3 SINE MIR -67 141 9 233 260 62 42 chr11 111201824 111201920 -39581633 + L3 LINE CR1 1058 1155 -422 257 247 284 0 chr11 111202008 111202089 -39581464 + MER5A DNA MER1_type 84 187 -2 238 329 178 0 chr11 111202172 111202324 -39581229 + L3 LINE CR1 1306 1484 -93 249 390 63 0 chr11 111202832 111202927 -39580626 - L2 LINE L2 -39 3233 3133 717 124 129 67 chr11 111202975 111203168 -39580385 + L1MA4 LINE L1 6087 6291 -9 799 258 21 0 chr11 111204787 111204973 -39578580 + MIR SINE MIR 18 207 -55 691 194 16 0 chr11 111204973 111205102 -39578451 - MLT1D LTR MaLR 0 505 375 506 270 63 16 chr11 111205389 111205578 -39577975 - MLT1D LTR MaLR -126 379 182 2212 235 11 2 chr11 111205579 111206099 -39577454 - MLT1D-int LTR MaLR -846 525 1 1994 196 123 7 chr11 111206099 111206547 -39577006 - MLT1D LTR MaLR 0 505 6 338 162 20 74 chr11 111206648 111206770 -39576783 - LTR50 LTR ERVL 0 795 660 252 167 0 0 chr11 111206770 111206818 -39576735 + (TA)n Simple_repeat Simple_repeat 1 48 0 1984 149 0 0 chr11 111206818 111207106 -39576447 - AluSx SINE Alu -24 288 1 291 245 29 72 chr11 111207112 111207251 -39576302 - LTR41 LTR ERVL -106 667 535 574 236 7 27 chr11 111207399 111207547 -39576006 - LTR41 LTR ERVL -628 145 1 24 0 0 0 chr11 111207837 111207861 -39575692 + AT_rich Low_complexity Low_complexity 1 24 0 26 50 0 0 chr11 111207964 111208004 -39575549 + AT_rich Low_complexity Low_complexity 1 40 0 1191 162 87 8 chr11 111208035 111208276 -39575277 + L1MC3 LINE L1 7185 7444 -341 909 138 0 0 chr11 111208279 111208424 -39575129 + L1MC3 LINE L1 7487 7631 -154 2087 122 0 7 chr11 111208429 111208717 -39574836 + AluSx SINE Alu 14 299 -13 23 0 0 0 chr11 111208788 111208811 -39574742 + AT_rich Low_complexity Low_complexity 1 23 0 264 170 20 50 chr11 111209026 111209126 -39574427 + (TTTAA)n Simple_repeat Simple_repeat 5 101 0 365 318 133 13 chr11 111209388 111209621 -39573932 + L1MC/D LINE L1 5255 5515 -2293 27 29 0 0 chr11 111209657 111209691 -39573862 + AT_rich Low_complexity Low_complexity 1 34 0 220 257 27 0 chr11 111209763 111209837 -39573716 + (TA)n Simple_repeat Simple_repeat 1 76 0 1443 217 43 0 chr11 111209837 111210136 -39573417 - AluJo SINE Alu 0 312 1 21 57 0 0 chr11 111210288 111210323 -39573230 + AT_rich Low_complexity Low_complexity 1 35 0 198 71 0 0 chr11 111210409 111210437 -39573116 + (TG)n Simple_repeat Simple_repeat 2 29 0 344 352 22 16 chr11 111210831 111211024 -39572529 - MIR SINE MIR -56 206 12 257 265 36 0 chr11 111211024 111211107 -39572446 + MER113 DNA MER1_type? 1 86 -435 776 259 153 37 chr11 111211510 111211893 -39571660 + MLT1H1 LTR MaLR 75 501 -54 1527 94 0 24 chr11 111211893 111212105 -39571448 + AluSq SINE Alu 91 297 -16 776 259 153 37 chr11 111212105 111212168 -39571385 + MLT1H1 LTR MaLR 501 555 0 713 284 156 46 chr11 111212226 111212642 -39570911 + MLT1J LTR MaLR 1 462 -49 243 222 111 14 chr11 111213096 111213168 -39570385 + MLT1L LTR MaLR 19 97 -518 253 311 19 19 chr11 111214193 111214299 -39569254 - MIR SINE MIR -86 122 17 190 241 190 0 chr11 111214646 111214704 -39568849 + MIR SINE MIR 117 185 -77 688 300 67 13 chr11 111214812 111215125 -39568428 - MER102a DNA MER1_type 0 330 1 195 225 99 0 chr11 111216327 111216398 -39567155 + MIR SINE MIR 120 197 -65 197 311 148 37 chr11 111217106 111217241 -39566312 + MIR SINE MIR 60 209 -53 6795 60 7 6 chr11 111217300 111218185 -39565368 - L1PA8 LINE L1 -7 6165 5280 4370 107 11 0 chr11 111218486 111219114 -39564439 + MER41B LTR ERV1 1 635 0 219 179 0 0 chr11 111221861 111221900 -39561653 + MIR SINE MIR 224 262 0 258 220 9 138 chr11 111222758 111222867 -39560686 + MER21B LTR ERV1 12 106 -757 * 2010 245 125 37 chr11 111222865 111223587 -39559966 + MER21B LTR ERV1 19 803 -60 233 333 0 0 chr11 111223678 111223750 -39559803 + MER21B LTR ERV1 307 378 -485 245 282 64 0 chr11 111223799 111223877 -39559676 + MIR3 SINE MIR 85 167 -41 255 273 0 0 chr11 111224030 111224085 -39559468 + MIR3 SINE MIR 151 205 -3 192 40 0 0 chr11 111224144 111224169 -39559384 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1254 218 55 11 chr11 111224723 111224994 -39558559 - AluJb SINE Alu -29 283 1 253 327 32 51 chr11 111225656 111225812 -39557741 - MIR3 SINE MIR -35 173 21 2597 23 3 10 chr11 111227865 111228166 -39555387 + AluY SINE Alu 1 299 -12 1234 57 6 0 chr11 111228496 111228654 -39554899 + L1PA7 LINE L1 5994 6152 -2 22 0 0 0 chr11 111229203 111229225 -39554328 + AT_rich Low_complexity Low_complexity 1 22 0 1924 136 0 18 chr11 111229231 111229517 -39554036 - AluSx SINE Alu -30 282 2 196 358 73 15 chr11 111229528 111229665 -39553888 + MIR SINE MIR 100 244 -18 241 242 0 32 chr11 111229825 111229887 -39553666 - HsTC2 DNA Tc2 -608 1290 1231 2031 101 0 0 chr11 111230277 111230544 -39553009 - AluSq SINE Alu -46 267 1 29 47 0 0 chr11 111230955 111230998 -39552555 + AT_rich Low_complexity Low_complexity 1 43 0 2331 97 0 3 chr11 111231003 111231301 -39552252 + AluSc SINE Alu 1 297 -12 909 243 59 5 chr11 111231376 111231598 -39551955 - MIR SINE MIR -21 241 8 971 240 97 23 chr11 111232407 111232814 -39550739 + MER41B LTR ERV1 150 468 -10 1190 115 58 7 chr11 111235389 111235593 -39547960 - PABL_A-int LTR ERV1 -594 4421 3961 305 336 94 64 chr11 111236004 111236634 -39546919 + L2 LINE L2 2592 3257 -15 284 267 26 35 chr11 111239763 111239879 -39543674 - MIR SINE MIR -147 115 1 215 281 74 74 chr11 111241065 111241186 -39542367 + L2 LINE L2 3147 3267 -5 230 335 56 50 chr11 111241617 111241778 -39541775 - L2 LINE L2 -110 3162 3001 299 252 109 34 chr11 111243185 111243332 -39540221 - L1ME4a LINE L1 -17 6104 5947 369 174 24 179 chr11 111243445 111243652 -39539901 - HAL1 LINE L1 0 2507 2333 2659 247 131 29 chr11 111243834 111245009 -39538544 - HAL1 LINE L1 -416 2091 797 384 263 117 29 chr11 111245173 111245344 -39538209 - L1ME4a LINE L1 -412 5709 5524 324 317 77 16 chr11 111246249 111246432 -39537121 - L1ME4a LINE L1 -1665 4481 4288 12739 124 22 22 chr11 111246438 111248446 -39535107 - Tigger1 DNA MER2_type 0 2418 410 1872 168 3 0 chr11 111248446 111248749 -39534804 - AluSx SINE Alu -8 304 1 12739 124 22 22 chr11 111248749 111248792 -39534761 - Tigger1 DNA MER2_type -2008 410 368 3265 156 31 5 chr11 111249060 111249408 -39534145 - L1PB4 LINE L1 -7 6149 5778 402 74 0 0 chr11 111249408 111249462 -39534091 + (TG)n Simple_repeat Simple_repeat 1 54 0 3265 156 31 5 chr11 111249462 111249697 -39533856 - L1PB4 LINE L1 -378 5778 5551 215 0 67 0 chr11 111249851 111249881 -39533672 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1300 184 13 87 chr11 111249884 111250193 -39533360 - AluJb SINE Alu -26 286 1 453 228 195 8 chr11 111251675 111251798 -39531755 + MLT1J2 LTR MaLR 37 182 -268 3431 127 59 0 chr11 111252094 111252652 -39530901 - Tigger3b DNA MER2_type 0 1231 641 779 176 7 7 chr11 111252652 111252788 -39530765 - FLAM_A SINE Alu -6 136 1 3433 141 45 5 chr11 111252788 111253390 -39530163 - Tigger3b DNA MER2_type -605 626 1 260 312 40 32 chr11 111254494 111254619 -39528934 + MIR SINE MIR 91 216 -46 35 71 0 0 chr11 111254732 111254802 -39528751 + AT_rich Low_complexity Low_complexity 1 70 0 255 341 196 22 chr11 111255571 111255800 -39527753 - L2 LINE L2 0 3272 3004 369 0 0 0 chr11 111256015 111256056 -39527497 + (TG)n Simple_repeat Simple_repeat 2 42 0 435 346 122 32 chr11 111256308 111256808 -39526745 - L2 LINE L2 -579 2735 2191 518 245 6 22 chr11 111257225 111257568 -39525985 + CT-rich Low_complexity Low_complexity 1 337 0 396 313 55 16 chr11 111258375 111258557 -39524996 + MIR SINE MIR 30 218 -44 21 71 0 0 chr11 111258825 111258867 -39524686 + AT_rich Low_complexity Low_complexity 1 42 0 2344 97 0 10 chr11 111258868 111259179 -39524374 + AluSc SINE Alu 1 308 -1 25 31 0 0 chr11 111259301 111259333 -39524220 + AT_rich Low_complexity Low_complexity 1 32 0 182 103 0 51 chr11 111259503 111259542 -39524011 + (TTTTTG)n Simple_repeat Simple_repeat 1 37 0 1549 152 46 46 chr11 111260093 111260396 -39523157 + AluJo SINE Alu 1 303 -9 434 336 92 74 chr11 111260720 111261167 -39522386 - L2 LINE L2 -9 3263 2809 507 322 154 50 chr11 111261200 111262016 -39521537 - L2 LINE L2 -568 2746 1846 260 401 50 50 chr11 111262855 111263114 -39520439 + L2 LINE L2 2941 3199 -73 1757 168 0 29 chr11 111263291 111263606 -39519947 + AluJb SINE Alu 5 310 -2 240 35 0 0 chr11 111263915 111263944 -39519609 + (TG)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr11 111266627 111266656 -39516897 + AT_rich Low_complexity Low_complexity 1 29 0 252 283 53 35 chr11 111266805 111266918 -39516635 + L3 LINE CR1 901 1015 -562 241 352 131 0 chr11 111267092 111267268 -39516285 + L3 LINE CR1 1011 1209 -368 257 329 0 0 chr11 111267436 111267509 -39516044 + Charlie8 DNA MER1_type 1 73 -2344 267 313 12 0 chr11 111267545 111267625 -39515928 + Charlie8 DNA MER1_type 185 265 -2152 193 257 0 95 chr11 111267706 111267780 -39515773 + L3 LINE CR1 1247 1313 -264 2311 115 0 3 chr11 111267783 111268097 -39515456 + AluSq SINE Alu 1 313 0 742 184 0 14 chr11 111268702 111268843 -39514710 - FLAM_C SINE Alu -4 139 1 45 19 0 0 chr11 111269031 111269083 -39514470 + AT_rich Low_complexity Low_complexity 1 52 0 27 49 0 0 chr11 111269903 111269944 -39513609 + AT_rich Low_complexity Low_complexity 1 41 0 1627 106 4 30 chr11 111270562 111270799 -39512754 - AluSg/x SINE Alu -10 300 70 184 189 19 38 chr11 111272134 111272187 -39511366 - L2 LINE L2 0 3313 3262 21 0 0 0 chr11 111272734 111272755 -39510798 + AT_rich Low_complexity Low_complexity 1 21 0 206 265 0 0 chr11 111273444 111273493 -39510060 - L2 LINE L2 -6 3266 3218 1186 294 31 0 chr11 111274152 111274475 -39509078 - MLT1I LTR MaLR -6 403 71 699 230 58 26 chr11 111274883 111275074 -39508479 - MIR SINE MIR -1 261 65 277 288 29 104 chr11 111275245 111275441 -39508112 - MIR SINE MIR -61 147 1 201 195 0 0 chr11 111276386 111276427 -39507126 + (CATA)n Simple_repeat Simple_repeat 4 44 0 22 56 0 0 chr11 111276787 111276823 -39506730 + AT_rich Low_complexity Low_complexity 1 36 0 190 321 57 0 chr11 111277236 111277289 -39506264 + MIR SINE MIR 21 76 -186 226 336 69 26 chr11 111278314 111278430 -39505123 + MIR SINE MIR 28 148 -114 959 225 37 9 chr11 111279097 111279315 -39504238 + MIR SINE MIR 19 242 -20 2380 73 3 7 chr11 111280467 111280769 -39502784 + AluSp SINE Alu 1 301 -12 241 356 21 69 chr11 111281548 111281736 -39501817 - MIR3 SINE MIR -11 197 19 23 92 0 0 chr11 111281863 111281928 -39501625 + AT_rich Low_complexity Low_complexity 1 65 0 2251 101 46 14 chr11 111282796 111283144 -39500409 - THE1C LTR MaLR -16 359 1 305 279 65 21 chr11 111283284 111283399 -39500154 + MIR SINE MIR 5 124 -84 263 282 18 0 chr11 111283696 111283806 -39499747 + Charlie2 DNA MER1_type 2597 2708 -154 485 154 56 63 chr11 111283851 111283994 -39499559 + Charlie2 DNA MER1_type 2721 2862 0 2083 151 32 74 chr11 111284153 111284585 -39498968 - MLT2D LTR ERVL 0 414 1 27 62 0 0 chr11 111285189 111285237 -39498316 + AT_rich Low_complexity Low_complexity 1 48 0 1431 242 40 43 chr11 111285511 111285592 -39497961 - L1M4 LINE L1 -3655 3302 3222 2114 99 0 33 chr11 111285592 111285894 -39497659 - AluSc SINE Alu -17 292 1 1431 242 40 43 chr11 111285894 111286607 -39496946 - L1M4 LINE L1 -3735 3222 2473 21 57 0 0 chr11 111286687 111286722 -39496831 + AT_rich Low_complexity Low_complexity 1 35 0 2558 218 90 48 chr11 111286826 111287865 -39495688 - L1M4 LINE L1 -4588 2371 1099 2096 126 3 3 chr11 111287865 111288158 -39495395 - AluSx SINE Alu -17 295 3 2558 218 90 48 chr11 111288158 111288621 -39494932 - L1M4 LINE L1 -5860 1099 657 1564 249 24 26 chr11 111288769 111289191 -39494362 - L1M4 LINE L1 -6437 422 2 422 346 37 0 chr11 111289642 111289804 -39493749 - MIR SINE MIR -61 201 34 324 0 0 0 chr11 111290388 111290424 -39493129 + (TGGA)n Simple_repeat Simple_repeat 1 36 0 201 311 27 14 chr11 111290478 111290552 -39493001 + MIR SINE MIR 18 92 -116 1080 148 6 0 chr11 111293060 111293243 -39490310 + L1MA1 LINE L1 6119 6302 0 204 316 43 50 chr11 111295506 111295645 -39487908 - MIR SINE MIR -8 254 117 1853 305 120 29 chr11 111297546 111298709 -39484844 + L2 LINE L2 1799 3063 -250 343 258 119 41 chr11 111298719 111299264 -39484289 + L1ME3A LINE L1 5282 5877 -293 22 35 0 0 chr11 111299569 111299598 -39483955 + AT_rich Low_complexity Low_complexity 1 29 0 7126 106 21 1 chr11 111299609 111301448 -39482105 + L1PA7 LINE L1 4292 6153 -1 29812 111 10 57 chr11 111301468 111307908 -39475645 + L1PA7 LINE L1 12 6147 -7 27 0 0 0 chr11 111307912 111307939 -39475614 + AT_rich Low_complexity Low_complexity 1 27 0 234 0 0 0 chr11 111308356 111308382 -39475171 + (T)n Simple_repeat Simple_repeat 1 26 0 2971 149 34 4 chr11 111310334 111311278 -39472275 + L1M1 LINE L1 4757 5725 -575 10096 200 36 34 chr11 111311281 111312584 -39470969 + L1PA15-16 LINE L1 1058 2357 -4492 2035 136 0 3 chr11 111312584 111312878 -39470675 + AluSg SINE Alu 1 293 -17 10096 200 36 34 chr11 111312878 111313377 -39470176 + L1PA15-16 LINE L1 2357 2854 -3995 1832 155 166 0 chr11 111313377 111313556 -39469997 + MSTA LTR MaLR 1 149 -279 183 42 0 0 chr11 111313556 111313580 -39469973 + (TC)n Simple_repeat Simple_repeat 2 25 0 1832 155 166 0 chr11 111313580 111313767 -39469786 + MSTA LTR MaLR 149 428 0 9612 128 7 43 chr11 111313769 111315406 -39468147 + MSTA-int LTR MaLR 3 1580 0 1737 179 137 8 chr11 111315406 111315785 -39467768 + MSTA LTR MaLR 1 428 0 10096 200 36 34 chr11 111315785 111315814 -39467739 + L1PA15-16 LINE L1 2854 2881 -3968 2203 116 0 0 chr11 111315814 111316107 -39467446 + AluSx SINE Alu 3 295 -17 10096 200 36 34 chr11 111316107 111317553 -39466000 + L1PA15-16 LINE L1 2881 4368 -2481 3929 214 49 4 chr11 111317780 111319317 -39464236 + L1M2 LINE L1 1788 3395 -3453 3702 71 17 53 chr11 111320199 111321278 -39462275 + MER11A LTR ERVK 1 1266 0 51358 84 13 14 chr11 111321278 111324844 -39458709 + HERVK11 LTR ERVK 1 3569 -4384 185 308 62 0 chr11 111324844 111324909 -39458644 + MIR SINE MIR 64 132 -76 51358 84 13 14 chr11 111324909 111328550 -39455003 + HERVK11 LTR ERVK 3569 7265 -688 2946 134 44 0 chr11 111328925 111329262 -39454291 - L1MA5A LINE L1 -4 6935 6563 279 0 0 0 chr11 111329262 111329293 -39454260 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2946 134 44 0 chr11 111329293 111329500 -39454053 - L1MA5A LINE L1 -376 6563 6367 11210 178 38 7 chr11 111329522 111332315 -39451238 - L1MA5A LINE L1 -745 6194 3318 2095 125 0 3 chr11 111334211 111334507 -39449046 + AluY SINE Alu 1 295 -16 4953 128 63 38 chr11 111334640 111335779 -39447774 - MER11A LTR ERVK 0 1266 1 5094 53 0 0 chr11 111335781 111336423 -39447130 - HERVK11 LTR ERVK -2 7951 7310 4382 250 142 10 chr11 111336529 111337755 -39445798 - L1MA5A LINE L1 -5213 1576 189 9113 196 17 11 chr11 111337944 111340332 -39443221 + L1PA16 LINE L1 3072 5445 -721 1728 142 48 37 chr11 111340332 111340627 -39442926 + AluJo SINE Alu 2 299 -13 9113 196 17 11 chr11 111340627 111340747 -39442806 + L1PA16 LINE L1 5445 5563 -603 2310 71 7 3 chr11 111340747 111341041 -39442512 - AluY SINE Alu -16 295 1 9113 196 17 11 chr11 111341041 111341606 -39441947 + L1PA16 LINE L1 5563 6164 -2 652 286 123 0 chr11 111341858 111342061 -39441492 + L2 LINE L2 3081 3308 -5 303 145 13 26 chr11 111342090 111342166 -39441387 + GA-rich Low_complexity Low_complexity 3 77 0 2244 107 3 0 chr11 111342326 111342624 -39440929 + AluSx SINE Alu 1 299 -13 217 314 0 70 chr11 111342843 111342929 -39440624 + MIR SINE MIR 20 99 -109 244 204 20 0 chr11 111343049 111343098 -39440455 - L2 LINE L2 -1 3271 3222 228 340 109 14 chr11 111343768 111343908 -39439645 - MIR SINE MIR -57 151 26 2119 115 7 0 chr11 111345868 111346164 -39437389 - AluSp SINE Alu -11 302 5 1382 190 104 33 chr11 111347182 111347519 -39436034 + MLT1A1 LTR MaLR 1 361 -4 206 174 109 0 chr11 111347610 111347656 -39435897 - L2 LINE L2 -2 3311 3261 246 312 26 0 chr11 111347711 111347788 -39435765 + MIR SINE MIR 1 79 -183 833 203 45 0 chr11 111347808 111347985 -39435568 - MIR SINE MIR 0 262 78 384 237 114 0 chr11 111348085 111348199 -39435354 + MIR SINE MIR 136 262 0 487 290 67 39 chr11 111348247 111348530 -39435023 + HAL1b LINE L1 490 780 -568 2339 84 3 0 chr11 111350188 111350485 -39433068 - AluY SINE Alu -13 298 1 1220 255 43 13 chr11 111351610 111352012 -39431541 + L1ME3A LINE L1 5661 6075 -95 2278 96 15 73 chr11 111352604 111353001 -39430552 + THE1C LTR MaLR 1 374 -1 270 0 0 0 chr11 111353138 111353168 -39430385 + (CA)n Simple_repeat Simple_repeat 1 30 0 752 201 86 38 chr11 111353228 111353437 -39430116 + MER20 DNA MER1_type 1 219 0 688 253 56 78 chr11 111353473 111354069 -39429484 + L1MC5 LINE L1 6616 7191 -770 1903 169 99 2 chr11 111354088 111354490 -39429063 + Charlie1 DNA MER1_type 2321 2761 0 1157 278 45 19 chr11 111354495 111354920 -39428633 + L1MC4 LINE L1 7455 7890 -152 2531 52 7 0 chr11 111355176 111355485 -39428068 - AluY SINE Alu 0 311 1 4968 204 45 55 chr11 111355488 111355695 -39427858 - L1M1 LINE L1 -3933 2395 2187 2275 123 0 0 chr11 111355695 111356004 -39427549 - AluSg SINE Alu -1 309 1 4968 204 45 55 chr11 111356004 111356762 -39426791 - L1M1 LINE L1 -4141 2187 1451 1731 161 7 20 chr11 111356762 111357067 -39426486 - AluJo SINE Alu 0 312 12 4968 204 45 55 chr11 111357067 111357741 -39425812 - L1M1 LINE L1 -4877 1451 772 3298 186 14 6 chr11 111357770 111358418 -39425135 - L1M1 LINE L1 -4617 711 10 3006 254 85 32 chr11 111358554 111360169 -39423384 - L1MDb LINE L1 -3972 2434 775 1978 124 40 79 chr11 111360585 111360965 -39422588 + MLT1A1 LTR MaLR 1 365 0 481 219 38 0 chr11 111360967 111361072 -39422481 + MLT1A1-int LTR MaLR 2 110 -1625 189 302 131 40 chr11 111361087 111361339 -39422214 - L2 LINE L2 -1504 1810 1536 182 247 34 101 chr11 111361778 111361867 -39421686 + MIR3 SINE MIR 119 201 -7 22 0 0 0 chr11 111362275 111362297 -39421256 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 111362952 111362974 -39420579 + AT_rich Low_complexity Low_complexity 1 22 0 1236 244 88 16 chr11 111364230 111364607 -39418946 - MLT1J2 LTR MaLR -7 443 40 322 259 0 49 chr11 111364703 111364784 -39418769 - L2 LINE L2 0 3313 3237 365 208 0 0 chr11 111364784 111364856 -39418697 - L1MC4a LINE L1 -355 7453 7382 21 36 0 0 chr11 111365051 111365079 -39418474 + AT_rich Low_complexity Low_complexity 1 28 0 525 256 246 0 chr11 111365249 111365448 -39418105 - MIR SINE MIR -14 248 1 322 327 77 50 chr11 111365726 111366026 -39417527 - L2 LINE L2 0 3313 3006 236 235 169 37 chr11 111366199 111366335 -39417218 - L2 LINE L2 -1359 1955 1802 603 314 18 18 chr11 111366513 111366733 -39416820 + MIR SINE MIR 5 224 -38 847 116 79 95 chr11 111366758 111366904 -39416649 - L1M2 LINE L1 -558 5733 5589 4169 158 16 25 chr11 111366904 111367696 -39415857 + LTR1 LTR ERV1 1 785 0 847 116 79 95 chr11 111367696 111367738 -39415815 - L1M2 LINE L1 -702 5589 5548 683 166 84 135 chr11 111368712 111369008 -39414545 - MER33 DNA MER1_type -40 284 4 484 264 15 84 chr11 111369235 111369508 -39414045 - L2 LINE L2 0 3313 3060 280 236 35 32 chr11 111369826 111369908 -39413645 + MIR SINE MIR 3 85 -123 408 221 23 0 chr11 111369911 111369997 -39413556 - MER81 DNA DNA 0 114 27 901 213 122 37 chr11 111370993 111371325 -39412228 - MSTD LTR MaLR 0 396 1 299 279 0 0 chr11 111371444 111371512 -39412041 + MIR SINE MIR 4 71 -191 768 275 48 70 chr11 111371562 111371918 -39411635 + LTR16A LTR ERVL 99 446 -4 4005 287 60 24 chr11 111371923 111374462 -39409091 + HERV16 LTR ERVL 2 2688 -2308 726 339 43 57 chr11 111374538 111375261 -39408292 + ERVL LTR ERVL 4639 5351 -413 323 341 137 14 chr11 111375382 111375593 -39407960 + LTR16A LTR ERVL 7 243 -207 25 0 0 0 chr11 111376372 111376397 -39407156 + AT_rich Low_complexity Low_complexity 1 25 0 523 320 93 73 chr11 111376464 111377229 -39406324 - L2 LINE L2 -8 3264 2467 477 342 42 26 chr11 111377229 111377422 -39406131 + MER91A DNA MER1_type 1 196 0 211 367 58 14 chr11 111377422 111377539 -39406014 - L2 LINE L2 -842 2472 2350 284 0 28 0 chr11 111377558 111377594 -39405959 + (TG)n Simple_repeat Simple_repeat 1 37 0 1652 120 34 4 chr11 111377594 111377861 -39405692 + L1MA4A LINE L1 6023 6297 -6 316 311 44 0 chr11 111377880 111377970 -39405583 - MIR SINE MIR -118 144 51 243 0 0 0 chr11 111378239 111378266 -39405287 + (T)n Simple_repeat Simple_repeat 1 27 0 2049 136 7 0 chr11 111378704 111378999 -39404554 - AluSq SINE Alu -16 297 1 2113 170 25 6 chr11 111379077 111379435 -39404118 + MLT1A1 LTR MaLR 1 365 0 283 323 39 16 chr11 111379476 111379603 -39403950 + L2 LINE L2 2378 2507 -807 * 329 320 82 0 chr11 111379593 111379715 -39403838 + L2 LINE L2 3141 3272 0 226 291 85 107 chr11 111379719 111380121 -39403432 + L2 LINE L2 2470 2862 -452 2240 103 3 0 chr11 111380260 111380552 -39403001 - AluSg SINE Alu 0 310 18 188 175 0 75 chr11 111380757 111380797 -39402756 + L2 LINE L2 3222 3258 -14 340 337 52 41 chr11 111380883 111381055 -39402498 + MER5A DNA MER1_type 16 189 0 1411 36 12 0 chr11 111382752 111382919 -39400634 - L1PA3 LINE L1 -19 6136 5968 221 262 65 56 chr11 111382919 111383026 -39400527 - L2 LINE L2 -195 3077 2970 433 263 0 35 chr11 111383181 111383295 -39400258 - L2 LINE L2 0 3313 3204 705 325 20 36 chr11 111385181 111385430 -39398123 - MIR SINE MIR 0 262 18 1059 261 89 47 chr11 111386099 111386628 -39396925 + L1MC4a LINE L1 5311 5861 -1947 234 366 43 37 chr11 111387016 111387177 -39396376 - L2 LINE L2 -540 2774 2613 216 337 58 70 chr11 111389559 111389802 -39393751 + L3 LINE CR1 899 1138 -439 293 331 31 68 chr11 111389905 111390068 -39393485 + L3 LINE CR1 1416 1572 -5 252 292 159 9 chr11 111390255 111390368 -39393185 - MIR SINE MIR -111 151 22 23 33 0 0 chr11 111391322 111391352 -39392201 + AT_rich Low_complexity Low_complexity 1 30 0 254 273 0 45 chr11 111391370 111391480 -39392073 + LTR28 LTR ERV1 878 982 -38 222 194 0 0 chr11 111391631 111391667 -39391886 + (TG)n Simple_repeat Simple_repeat 1 36 0 372 340 57 10 chr11 111391754 111391948 -39391605 + MIR SINE MIR 23 225 -37 822 145 8 0 chr11 111392003 111392134 -39391419 + MER5A DNA MER1_type 47 178 -11 52 41 0 0 chr11 111393290 111393363 -39390190 + AT_rich Low_complexity Low_complexity 1 73 0 577 275 91 91 chr11 111394236 111394712 -39388841 + MLT1G LTR MaLR 10 526 -69 1980 154 13 0 chr11 111394978 111395277 -39388276 - AluSx SINE Alu -9 303 1 5581 107 30 0 chr11 111395356 111396402 -39387151 - L1PA14 LINE L1 0 6161 5134 2306 83 0 17 chr11 111396403 111396703 -39386850 - AluY SINE Alu -16 295 1 260 264 70 23 chr11 111397132 111397261 -39386292 + L1MEd LINE L1 44 178 -5941 435 358 90 41 chr11 111397339 111397705 -39385848 + L1MEd LINE L1 249 632 -5487 1260 245 53 3 chr11 111397728 111398107 -39385446 + L1ME3A LINE L1 5678 6075 -95 2287 96 15 73 chr11 111398699 111399096 -39384457 + THE1C LTR MaLR 1 374 -1 270 0 0 0 chr11 111399233 111399263 -39384290 + (CA)n Simple_repeat Simple_repeat 1 30 0 764 196 86 38 chr11 111399323 111399532 -39384021 + MER20 DNA MER1_type 1 219 0 629 256 64 74 chr11 111399570 111400171 -39383382 + L1MC4 LINE L1 6625 7191 -770 1785 169 99 2 chr11 111400190 111400592 -39382961 + Charlie1 DNA MER1_type 2321 2761 0 1036 279 42 19 chr11 111400597 111401023 -39382530 + L1MC4 LINE L1 7455 7890 -152 1677 128 6 85 chr11 111401411 111401730 -39381823 - MER1B DNA MER1_type 0 339 46 403 305 134 18 chr11 111402517 111402681 -39380872 + MIR SINE MIR 64 246 -16 358 211 40 0 chr11 111402694 111402770 -39380783 - L2 LINE L2 -5 3308 3230 426 308 122 18 chr11 111402916 111403137 -39380416 + MIR SINE MIR 6 249 -13 1159 264 70 40 chr11 111403642 111404097 -39379456 - L2 LINE L2 -338 2976 2508 23 0 0 0 chr11 111404124 111404147 -39379406 + AT_rich Low_complexity Low_complexity 1 23 0 6621 82 20 0 chr11 111404157 111405846 -39377707 + L1PA7 LINE L1 4443 6151 -3 183 80 0 0 chr11 111406492 111406517 -39377036 + (A)n Simple_repeat Simple_repeat 1 25 0 1814 106 0 0 chr11 111406598 111406833 -39376720 + AluSq SINE Alu 1 235 -78 651 114 0 0 chr11 111407056 111407144 -39376409 + FRAM SINE Alu 35 122 -54 33 25 0 0 chr11 111407148 111407188 -39376365 + AT_rich Low_complexity Low_complexity 1 40 0 502 294 59 50 chr11 111407309 111407467 -39376086 + MIR SINE MIR 28 190 -72 14522 128 34 10 chr11 111407467 111409826 -39373727 + Tigger1 DNA MER2_type 1 2417 -1 502 294 59 50 chr11 111409826 111409888 -39373665 + MIR SINE MIR 190 250 -12 364 344 66 0 chr11 111410219 111410370 -39373183 - MER5A DNA MER1_type -28 161 1 2366 245 133 22 chr11 111410428 111411333 -39372220 - L2 LINE L2 -1027 2287 1283 350 214 18 54 chr11 111411355 111411467 -39372086 - Charlie7 DNA MER1_type -470 2142 2035 225 268 28 14 chr11 111411535 111411606 -39371947 + MIR SINE MIR 49 120 -142 1023 217 72 37 chr11 111411664 111411943 -39371610 - Charlie7 DNA MER1_type -613 1999 1702 2124 96 13 30 chr11 111411943 111412245 -39371308 - AluY SINE Alu -14 297 1 1023 217 72 37 chr11 111412245 111412339 -39371214 - Charlie7 DNA MER1_type -910 1702 1613 184 291 86 60 chr11 111413477 111413628 -39369925 + L2 LINE L2 2612 2766 -548 2134 113 10 3 chr11 111414182 111414484 -39369069 + AluSx SINE Alu 1 304 -8 385 222 0 0 chr11 111414579 111414669 -39368884 - MER46C DNA MER2_type 0 338 249 232 266 149 0 chr11 111414779 111414873 -39368680 - MER46C DNA MER2_type -230 108 1 2002 123 13 10 chr11 111415150 111415450 -39368103 + AluSx SINE Alu 1 301 -11 633 155 82 2 chr11 111415455 111415649 -39367904 + AluJo SINE Alu 3 258 -54 33 25 0 0 chr11 111415653 111415693 -39367860 + AT_rich Low_complexity Low_complexity 1 40 0 502 294 59 50 chr11 111415814 111415972 -39367581 + MIR SINE MIR 28 190 -72 14510 130 34 10 chr11 111415972 111418332 -39365221 + Tigger1 DNA MER2_type 1 2417 -1 502 294 59 50 chr11 111418332 111418394 -39365159 + MIR SINE MIR 190 250 -12 364 344 66 0 chr11 111418725 111418876 -39364677 - MER5A DNA MER1_type -28 161 1 2366 245 133 22 chr11 111418934 111419839 -39363714 - L2 LINE L2 -1027 2287 1283 350 214 18 54 chr11 111419861 111419973 -39363580 - Charlie7 DNA MER1_type -470 2142 2035 229 268 28 14 chr11 111420041 111420112 -39363441 + MIR SINE MIR 49 120 -142 943 226 75 35 chr11 111420169 111420446 -39363107 - Charlie7 DNA MER1_type -613 1999 1702 1982 97 13 49 chr11 111420446 111420754 -39362799 - AluY SINE Alu -14 297 1 943 226 75 35 chr11 111420754 111420848 -39362705 - Charlie7 DNA MER1_type -910 1702 1613 22 35 0 0 chr11 111421270 111421299 -39362254 + AT_rich Low_complexity Low_complexity 1 29 0 184 291 86 60 chr11 111421969 111422120 -39361433 + L2 LINE L2 2612 2766 -548 2134 113 10 3 chr11 111422675 111422977 -39360576 + AluSx SINE Alu 1 304 -8 385 222 0 0 chr11 111423072 111423162 -39360391 - MER46C DNA MER2_type 0 338 249 232 266 149 0 chr11 111423272 111423366 -39360187 - MER46C DNA MER2_type -230 108 1 2303 112 0 0 chr11 111423643 111423948 -39359605 + AluSx SINE Alu 1 305 -7 429 255 149 32 chr11 111424079 111424358 -39359195 - L1MC4a LINE L1 -370 5796 5568 354 239 183 24 chr11 111424419 111424630 -39358923 - L1MC4a LINE L1 -747 5399 5198 21 0 0 0 chr11 111424865 111424886 -39358667 + AT_rich Low_complexity Low_complexity 1 21 0 355 295 102 0 chr11 111424989 111425155 -39358398 + MIR SINE MIR 65 247 -15 523 244 30 0 chr11 111425393 111425524 -39358029 + MIR SINE MIR 128 262 0 1904 151 19 3 chr11 111426110 111426428 -39357125 - MER1B DNA MER1_type 0 339 17 475 234 70 16 chr11 111427089 111427217 -39356336 + MIR SINE MIR 106 240 -22 377 319 25 17 chr11 111428883 111429002 -39354551 + L2 LINE L2 3134 3253 -19 2235 63 49 3 chr11 111429070 111429356 -39354197 + AluY SINE Alu 1 299 -12 220 307 40 59 chr11 111429549 111429650 -39353903 - L2 LINE L2 -6 3266 3168 790 265 90 14 chr11 111430227 111430450 -39353103 + MIR SINE MIR 8 247 -15 439 260 32 41 chr11 111431098 111431221 -39352332 - MIR SINE MIR -31 231 110 284 284 57 11 chr11 111431635 111431723 -39351830 + MIR3 SINE MIR 67 158 -50 200 254 0 63 chr11 111432736 111432799 -39350754 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 362 277 119 86 chr11 111434673 111435067 -39348486 - L1M2 LINE L1 -5734 1115 709 327 247 24 0 chr11 111438007 111438092 -39345461 + MLT1J2 LTR MaLR 361 447 -3 260 323 84 24 chr11 111438101 111438268 -39345285 - L2 LINE L2 -272 3000 2824 675 184 49 21 chr11 111438339 111439018 -39344535 - L1MB7 LINE L1 -14 6170 5402 477 262 131 26 chr11 111439056 111439247 -39344306 - MIR SINE MIR -34 228 18 361 239 201 0 chr11 111439650 111439784 -39343769 - L1MA10 LINE L1 -7 6327 6167 331 241 23 138 chr11 111439784 111439881 -39343672 - L1ME1 LINE L1 -137 6029 5911 23 68 0 0 chr11 111439881 111439925 -39343628 + AT_rich Low_complexity Low_complexity 1 44 0 331 241 23 138 chr11 111439925 111439958 -39343595 - L1ME1 LINE L1 -255 5911 5876 4533 175 73 34 chr11 111439976 111440995 -39342558 - L1MC3 LINE L1 -16 7769 6712 1084 210 93 10 chr11 111440998 111441308 -39342245 - L1ME2 LINE L1 -208 5956 5621 1194 207 15 2 chr11 111441319 111441630 -39341923 + MLT1A1 LTR MaLR 1 365 0 2161 220 27 28 chr11 111441644 111442487 -39341066 - L1ME2 LINE L1 -581 5585 4732 1199 206 88 12 chr11 111442854 111443174 -39340379 - L1ME2 LINE L1 -1421 4725 4382 1027 260 11 32 chr11 111443179 111443502 -39340051 - MLT1E1 LTR MaLR 0 654 310 268 217 12 60 chr11 111443481 111443564 -39339989 - MLT1E1 LTR MaLR -419 205 127 * 189 0 0 0 chr11 111443564 111443585 -39339968 + (T)n Simple_repeat Simple_repeat 1 21 0 1597 181 10 42 chr11 111443724 111444034 -39339519 - AluJo SINE Alu -12 300 1 688 222 47 6 chr11 111444034 111444205 -39339348 - MLT1E1 LTR MaLR -468 186 9 1617 274 13 0 chr11 111444255 111444704 -39338849 - L1ME2 LINE L1 -2038 4108 3654 2135 121 0 23 chr11 111444727 111445032 -39338521 - AluSx SINE Alu -14 298 1 305 282 159 0 chr11 111445354 111445488 -39338065 - MIR SINE MIR -73 189 31 615 274 44 22 chr11 111445940 111446326 -39337227 - MLT1L LTR MaLR -2 613 184 180 222 74 0 chr11 111446358 111446412 -39337141 + L2 LINE L2 1461 1518 -1796 2468 67 0 0 chr11 111446990 111447290 -39336263 + AluY SINE Alu 1 300 -11 3954 101 6 0 chr11 111447547 111448093 -39335460 - MER41B LTR ERV1 -86 549 1 13986 99 35 6 chr11 111448095 111450181 -39333372 - MER41B-int LTR ERV1 -4 5942 3796 2339 101 0 0 chr11 111451312 111451609 -39331944 + AluSx SINE Alu 1 297 -15 300 293 108 0 chr11 111452006 111452173 -39331380 - HAL1b LINE L1 -770 578 394 207 277 0 0 chr11 111452439 111452504 -39331049 + T-rich Low_complexity Low_complexity 1 65 0 1560 234 50 31 chr11 111452518 111452976 -39330577 - MLT1C LTR MaLR 0 467 1 780 227 56 14 chr11 111453007 111453223 -39330330 - L1PA16 LINE L1 -5 6161 5937 1800 202 56 84 chr11 111453227 111453867 -39329686 - L1MC4 LINE L1 0 8042 7421 451 103 15 0 chr11 111453878 111453946 -39329607 + AluSg/x SINE Alu 203 271 -39 589 283 100 41 chr11 111453987 111455302 -39328251 - L1MC4a LINE L1 -813 5333 5073 1287 185 54 74 chr11 111455302 111455599 -39327954 - AluJo SINE Alu -21 291 1 589 283 100 41 chr11 111455599 111456115 -39327438 - L1MC4a LINE L1 -1073 5073 4589 32 26 0 0 chr11 111456123 111456162 -39327391 + AT_rich Low_complexity Low_complexity 1 39 0 9301 36 0 5 chr11 111456380 111458278 -39325275 - L1PA4 LINE L1 0 6155 4250 528 33 0 0 chr11 111458278 111458339 -39325214 + L1PA4 LINE L1 4189 4249 -1897 602 305 117 0 chr11 111458385 111458805 -39324748 - L1MC4a LINE L1 -1665 4481 4013 183 80 0 0 chr11 111458810 111458835 -39324718 + (TATATG)n Simple_repeat Simple_repeat 5 29 0 351 113 0 0 chr11 111458870 111458881 -39324672 + (TG)n Simple_repeat Simple_repeat 1 64 0 351 113 0 0 chr11 111458881 111458934 -39324619 + (TG)n Simple_repeat Simple_repeat 2 54 0 245 197 16 0 chr11 111459051 111459112 -39324441 + (TA)n Simple_repeat Simple_repeat 2 63 0 180 0 0 0 chr11 111459466 111459486 -39324067 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 4691 159 10 24 chr11 111459493 111459701 -39323852 - L1MA6 LINE L1 -24 6276 6067 1578 120 0 34 chr11 111459701 111459968 -39323585 - L1PA10 LINE L1 -1 6167 5910 4691 159 10 24 chr11 111459968 111460640 -39322913 - L1MA6 LINE L1 -233 6067 5408 737 191 65 24 chr11 111461568 111461736 -39321817 + MLT1B LTR MaLR 1 175 -215 408 111 0 0 chr11 111461744 111461807 -39321746 + (TC)n Simple_repeat Simple_repeat 2 64 0 935 187 32 0 chr11 111461819 111462006 -39321547 + MLT1B LTR MaLR 191 383 -7 3049 88 56 5 chr11 111462006 111462437 -39321116 - MLT2A2 LTR ERVL 0 453 1 225 0 0 0 chr11 111463218 111463243 -39320310 + (T)n Simple_repeat Simple_repeat 1 25 0 1536 240 63 4 chr11 111463483 111463987 -39319566 - L1MC4a LINE L1 -3339 2807 2274 13920 191 37 32 chr11 111464004 111464269 -39319284 - L1MA4A LINE L1 -27 6276 6014 2208 131 47 6 chr11 111464269 111464629 -39318924 + THE1C LTR MaLR 1 375 0 9786 102 19 76 chr11 111464629 111466305 -39317248 + THE1C-int LTR MaLR 1 1580 0 2628 113 11 3 chr11 111466305 111466677 -39316876 + THE1C LTR MaLR 1 375 0 13920 191 37 32 chr11 111466677 111468761 -39314792 - L1MA4A LINE L1 -289 6014 3943 1463 44 22 0 chr11 111468761 111468944 -39314609 - L1PA3 LINE L1 0 6155 5969 13920 191 37 32 chr11 111468944 111470478 -39313075 - L1MA4A LINE L1 -2360 3943 2353 2049 122 0 17 chr11 111470478 111470773 -39312780 - AluSg1 SINE Alu -19 290 1 13920 191 37 32 chr11 111470773 111470926 -39312627 - L1MA4A LINE L1 -3950 2353 2202 252 0 0 0 chr11 111470926 111470954 -39312599 + (T)n Simple_repeat Simple_repeat 1 28 0 227 149 0 0 chr11 111523213 111523260 -39260293 + Alu SINE Alu 253 299 0 2403 135 54 10 chr11 111523350 111523758 -39259795 - MSTA LTR MaLR -2 426 1 206 305 152 48 chr11 111523800 111524069 -39259484 + L2 LINE L2 2968 3264 -49 4332 151 4 1 chr11 111524515 111525235 -39258318 - L1MB2 LINE L1 0 6171 5450 812 218 5 62 chr11 111525989 111526182 -39257371 - MER20 DNA MER1_type -2 217 36 493 284 175 9 chr11 111526489 111526700 -39256853 - MIR SINE MIR -1 261 16 279 0 0 0 chr11 111527636 111527667 -39255886 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 211 322 82 68 chr11 111528063 111528209 -39255344 - L2 LINE L2 -614 2700 2553 571 282 143 5 chr11 111528414 111528630 -39254923 + MIR SINE MIR 7 252 -10 210 37 0 0 chr11 111529824 111529851 -39253702 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 212 189 0 0 chr11 111530490 111530527 -39253026 + A-rich Low_complexity Low_complexity 1 37 0 181 275 150 50 chr11 111533741 111533861 -39249692 + L2 LINE L2 3141 3272 0 202 333 0 0 chr11 111534946 111535003 -39248550 + CT-rich Low_complexity Low_complexity 4 60 0 180 0 0 0 chr11 111535882 111535902 -39247651 + (T)n Simple_repeat Simple_repeat 1 20 0 2029 142 13 93 chr11 111538012 111538400 -39245153 + LTR18A LTR ERVL 1 357 0 21 0 0 0 chr11 111539525 111539546 -39244007 + AT_rich Low_complexity Low_complexity 1 21 0 1516 155 94 55 chr11 111540274 111540473 -39243080 - THE1C LTR MaLR 0 375 154 2376 78 0 3 chr11 111540473 111540767 -39242786 - AluY SINE Alu -17 294 2 1516 155 94 55 chr11 111540767 111540928 -39242625 - THE1C LTR MaLR -221 154 1 428 261 60 80 chr11 111541674 111541873 -39241680 - MIR SINE MIR -57 205 11 203 88 29 0 chr11 111542598 111542632 -39240921 + (TC)n Simple_repeat Simple_repeat 2 36 0 358 369 35 0 chr11 111542861 111543002 -39240551 - MIR SINE MIR -105 157 12 196 303 166 40 chr11 111543095 111543270 -39240283 + L2 LINE L2 2326 2522 -792 188 326 70 12 chr11 111543639 111543725 -39239828 + L2 LINE L2 2995 3085 -187 1911 149 0 0 chr11 111544306 111544607 -39238946 - AluJb SINE Alu 0 301 1 246 274 69 69 chr11 111544624 111544807 -39238746 - MER5B DNA MER1_type 0 178 7 6433 91 31 19 chr11 111546123 111547966 -39235587 - LTR10A-int LTR ERV1 -4304 2592 712 556 236 72 117 chr11 111548388 111549027 -39234526 - LTR10A-int LTR ERV1 -6064 792 1 1698 130 53 66 chr11 111549036 111549413 -39234140 - LTR10A LTR ERV1 -61 548 177 1188 96 76 76 chr11 111549398 111549649 -39233904 - LTR10A LTR ERV1 -172 437 187 * 2330 119 0 0 chr11 111549841 111550143 -39233410 - AluSq SINE Alu -11 302 1 1010 173 0 0 chr11 111551520 111551693 -39231860 - FRAM SINE Alu -3 173 1 217 309 62 0 chr11 111551695 111551776 -39231777 - MIR SINE MIR -58 150 65 253 243 144 40 chr11 111551795 111551968 -39231585 - MLT1J LTR MaLR -18 493 303 949 155 0 7 chr11 111552063 111552218 -39231335 + FRAM SINE Alu 6 159 -17 420 281 163 0 chr11 111553295 111553455 -39230098 + MER5A DNA MER1_type 4 189 0 350 356 25 6 chr11 111553903 111554063 -39229490 + MIR SINE MIR 24 186 -76 453 310 27 16 chr11 111555165 111555349 -39228204 + MLT1L LTR MaLR 430 615 0 753 265 130 30 chr11 111556189 111556730 -39226823 - MLT1G1 LTR MaLR 0 595 10 27 0 0 0 chr11 111556746 111556773 -39226780 + AT_rich Low_complexity Low_complexity 1 27 0 494 293 66 59 chr11 111556881 111557137 -39226416 - MIR SINE MIR -2 260 3 1116 120 16 31 chr11 111557790 111557982 -39225571 + L1PA10 LINE L1 5980 6168 0 2184 115 0 3 chr11 111558563 111558859 -39224694 - AluSx SINE Alu -17 295 1 218 179 0 107 chr11 111558971 111559027 -39224526 - L2 LINE L2 -2 3311 3262 393 321 26 36 chr11 111559126 111559319 -39224234 + MIR3 SINE MIR 5 195 -13 2283 81 3 14 chr11 111559584 111559880 -39223673 - AluSg SINE Alu -17 293 1 347 315 11 0 chr11 111559893 111559985 -39223568 - MER5A DNA MER1_type -93 96 4 2266 119 0 0 chr11 111560823 111561117 -39222436 - AluSx SINE Alu -18 294 1 279 336 34 42 chr11 111561130 111561249 -39222304 + L2 LINE L2 3149 3266 -6 2271 95 3 0 chr11 111563859 111564154 -39219399 + AluSp SINE Alu 1 296 -17 2133 126 0 19 chr11 111564674 111564991 -39218562 + AluSx SINE Alu 1 311 -1 585 0 0 0 chr11 111566432 111566497 -39217056 + (TTTTA)n Simple_repeat Simple_repeat 1 65 0 844 234 178 0 chr11 111566629 111566932 -39216621 - L1MC4 LINE L1 -452 7590 7234 1509 189 56 21 chr11 111566970 111567279 -39216274 + AluJb SINE Alu 1 312 0 25 0 0 0 chr11 111567845 111567870 -39215683 + AT_rich Low_complexity Low_complexity 1 25 0 678 166 40 26 chr11 111568175 111568326 -39215227 + 7SK RNA RNA 1 153 -40 325 153 17 0 chr11 111568343 111568402 -39215151 + 7SK RNA RNA 126 185 -8 343 311 112 50 chr11 111570107 111570529 -39213024 + L2 LINE L2 2766 3213 -100 2431 231 11 4 chr11 111571225 111571932 -39211621 + L1 LINE L1 2849 3560 -2586 4425 210 11 3 chr11 111571936 111573014 -39210539 + L1 LINE L1 4079 5165 -981 276 30 0 0 chr11 111573131 111573164 -39210389 + (A)n Simple_repeat Simple_repeat 1 33 0 702 202 0 0 chr11 111573507 111573626 -39209927 + MIR SINE MIR 13 131 -131 1689 156 13 22 chr11 111573681 111573996 -39209557 + Tigger3(Golem) DNA MER2_type 2716 3027 -2 504 211 18 0 chr11 111573996 111574105 -39209448 + MIR SINE MIR 131 241 -21 1824 162 148 19 chr11 111574336 111574749 -39208804 + MER31B LTR ERV1 1 466 0 824 269 64 5 chr11 111575469 111575688 -39207865 + MIR SINE MIR 22 253 -9 194 0 39 0 chr11 111576625 111576651 -39206902 + (CA)n Simple_repeat Simple_repeat 1 27 0 228 314 108 0 chr11 111577153 111577255 -39206298 - L2 LINE L2 -56 3216 3104 801 246 41 9 chr11 111577298 111577518 -39206035 - MIR SINE MIR -34 228 2 1490 238 6 10 chr11 111578550 111578861 -39204692 + AluJo SINE Alu 1 310 -2 222 171 0 0 chr11 111578861 111578902 -39204651 + GA-rich Low_complexity Low_complexity 2 42 0 2165 117 0 22 chr11 111579085 111579401 -39204152 + AluSx SINE Alu 1 309 -3 2329 106 3 6 chr11 111579594 111579905 -39203648 + AluSp SINE Alu 1 310 -3 2341 109 0 0 chr11 111580012 111580315 -39203238 - AluSx SINE Alu -9 303 1 1657 199 67 0 chr11 111580460 111580821 -39202732 + Tigger3b DNA MER2_type 2 386 -845 423 228 0 0 chr11 111580825 111580904 -39202649 + Tigger3b DNA MER2_type 1152 1230 -1 466 252 48 0 chr11 111581014 111581161 -39202392 + MER63A DNA MER1_type 57 210 0 190 356 35 11 chr11 111582995 111583082 -39200471 + L2 LINE L2 2710 2798 -516 247 294 108 20 chr11 111583156 111583258 -39200295 - MIR SINE MIR -73 189 79 202 219 24 0 chr11 111585936 111585977 -39197576 - L2 LINE L2 -16 3256 3215 24 67 0 0 chr11 111585979 111586024 -39197529 + AT_rich Low_complexity Low_complexity 1 45 0 214 298 53 0 chr11 111586817 111586911 -39196642 + L2 LINE L2 2428 2526 -788 198 286 0 16 chr11 111587458 111587521 -39196032 + L2 LINE L2 3251 3312 -1 395 330 123 6 chr11 111588000 111588197 -39195356 + MIR SINE MIR 39 256 -6 2285 112 0 7 chr11 111589295 111589600 -39193953 - AluSx SINE Alu -9 303 1 540 283 108 19 chr11 111591123 111591335 -39192218 + MIR SINE MIR 18 248 -14 21 36 0 0 chr11 111591340 111591368 -39192185 + AT_rich Low_complexity Low_complexity 1 28 0 405 78 125 0 chr11 111592633 111592697 -39190856 - MIR SINE MIR -100 162 91 1046 147 6 6 chr11 111593611 111593774 -39189779 - FRAM SINE Alu -21 155 1 2098 117 16 26 chr11 111593877 111594184 -39189369 - AluSx SINE Alu -8 304 1 384 160 170 0 chr11 111594434 111594534 -39189019 - L2 LINE L2 -83 3230 3114 744 121 0 9 chr11 111594567 111594683 -39188870 + FLAM_C SINE Alu 19 133 -10 720 323 16 0 chr11 111594689 111594937 -39188616 - L2 LINE L2 -976 2338 2087 1237 191 76 69 chr11 111595456 111595744 -39187809 - AluJo SINE Alu -22 290 1 23 33 0 0 chr11 111595860 111595890 -39187663 + AT_rich Low_complexity Low_complexity 1 30 0 1571 125 121 21 chr11 111595986 111596266 -39187287 - AluJb SINE Alu -4 308 1 227 135 0 0 chr11 111596420 111596457 -39187096 + Charlie5 DNA MER1_type 2549 2585 -27 453 314 52 35 chr11 111596469 111596698 -39186855 - MIR SINE MIR -1 261 29 3874 139 18 5 chr11 111596912 111597539 -39186014 - MER41B LTR ERV1 0 635 1 24 0 0 0 chr11 111598046 111598070 -39185483 + AT_rich Low_complexity Low_complexity 1 24 0 1799 156 7 0 chr11 111598272 111598602 -39184951 - AluSq SINE Alu 0 332 1 2016 139 7 0 chr11 111598645 111598948 -39184605 - AluSq SINE Alu -8 305 1 1335 81 0 35 chr11 111599839 111600013 -39183540 - AluSc SINE Alu -11 298 131 1956 123 7 14 chr11 111600014 111600307 -39183246 - AluSg SINE Alu -19 291 1 1769 278 109 44 chr11 111600575 111600853 -39182700 + L2 LINE L2 2120 2378 -935 872 222 69 0 chr11 111600853 111601056 -39182497 + MER20 DNA MER1_type 2 218 -1 1769 278 109 44 chr11 111601056 111601885 -39181668 + L2 LINE L2 2378 3313 0 825 161 0 22 chr11 111602119 111602256 -39181297 + AluJb SINE Alu 1 134 -178 2115 137 17 0 chr11 111602420 111602720 -39180833 + AluSx SINE Alu 1 305 -7 2018 131 0 0 chr11 111602964 111603246 -39180307 + AluSx SINE Alu 1 282 -30 203 0 0 36 chr11 111603255 111603283 -39180270 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 711 266 171 37 chr11 111603975 111604263 -39179290 - L1M4 LINE L1 -1637 4509 4149 1763 166 49 0 chr11 111604263 111604547 -39179006 - AluJb SINE Alu -14 298 1 711 266 171 37 chr11 111604547 111604667 -39178886 - L1M4 LINE L1 -1997 4149 4046 226 260 52 21 chr11 111605419 111605515 -39178038 + L1MD1 LINE L1 6109 6207 -35 2862 3 0 0 chr11 111605515 111605823 -39177730 + AluYb8 SINE Alu 1 308 -10 8992 128 24 48 chr11 111605940 111607613 -39175940 + Tigger1 DNA MER2_type 787 2418 0 185 304 88 48 chr11 111608865 111608990 -39174563 - L2 LINE L2 -2054 1260 1131 1337 179 4 0 chr11 111609778 111610012 -39173541 - MER46A DNA MER2_type -1 235 1 212 163 0 0 chr11 111610432 111610475 -39173078 + T-rich Low_complexity Low_complexity 1 43 0 183 80 0 0 chr11 111611255 111611280 -39172273 + (T)n Simple_repeat Simple_repeat 1 25 0 1668 135 37 35 chr11 111611405 111611549 -39172004 - L1PBb LINE L1 -4835 1369 1227 2156 108 0 0 chr11 111611549 111611837 -39171716 - AluSg SINE Alu -20 290 3 1668 135 37 35 chr11 111611837 111612109 -39171444 - L1PBb LINE L1 -4977 1227 950 312 70 0 0 chr11 111612109 111612152 -39171401 + (TG)n Simple_repeat Simple_repeat 2 44 0 1668 135 37 35 chr11 111612152 111612346 -39171207 - L1PBb LINE L1 -5254 950 758 1428 187 191 28 chr11 111612362 111612833 -39170720 - LTR10A LTR ERV1 -61 548 1 5451 240 16 27 chr11 111612836 111614343 -39169210 - LTR10A-int LTR ERV1 -4 6645 5156 180 77 0 0 chr11 111614612 111614638 -39168915 + (T)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr11 111614707 111614736 -39168817 + AT_rich Low_complexity Low_complexity 1 29 0 455 258 32 32 chr11 111615840 111615964 -39167589 - MIR3 SINE MIR -21 187 64 3801 271 42 29 chr11 111616659 111618336 -39165217 - L1PBa LINE L1 -5219 1644 3 247 368 64 16 chr11 111619275 111619400 -39164153 - L2 LINE L2 0 3313 3183 1421 215 34 7 chr11 111620826 111621119 -39162434 + AluJo SINE Alu 1 301 -11 2359 87 7 0 chr11 111622090 111622389 -39161164 + AluSp SINE Alu 1 301 -12 195 321 116 18 chr11 111622908 111623020 -39160533 - L2 LINE L2 -1 3312 3190 276 281 128 43 chr11 111623187 111623468 -39160085 - HAL1 LINE L1 -169 2338 2034 2379 75 0 7 chr11 111623471 111623776 -39159777 - AluY SINE Alu -8 303 1 21 57 0 0 chr11 111624013 111624048 -39159505 + AT_rich Low_complexity Low_complexity 1 35 0 1884 138 76 0 chr11 111624512 111624631 -39158922 + AluJb SINE Alu 1 110 -202 201 74 0 0 chr11 111624631 111624658 -39158895 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1884 138 76 0 chr11 111624658 111624828 -39158725 + AluJb SINE Alu 110 312 0 1495 139 31 28 chr11 111624943 111625230 -39158323 + LTR32 LTR ERVL 179 466 -5 374 350 55 78 chr11 111625265 111625611 -39157942 + L2 LINE L2 2925 3262 -10 2465 112 11 3 chr11 111626640 111627006 -39156547 - L1PB1 LINE L1 0 6151 5783 182 204 0 20 chr11 111627013 111627062 -39156491 + (TA)n Simple_repeat Simple_repeat 1 48 0 2300 99 20 0 chr11 111627062 111627417 -39156136 - L1PB1 LINE L1 -360 5791 5430 386 158 24 49 chr11 111627859 111627941 -39155612 - MER5A DNA MER1_type -76 113 34 243 219 82 41 chr11 111627881 111627954 -39155599 + MER5A DNA MER1_type 105 180 -9 * 304 309 27 27 chr11 111628973 111629083 -39154470 - L2 LINE L2 -237 3035 2926 342 271 234 0 chr11 111629160 111629267 -39154286 + MIR SINE MIR 109 240 -22 3546 172 15 43 chr11 111629386 111630137 -39153416 + Tigger1 DNA MER2_type 1 730 -1688 767 139 7 42 chr11 111631727 111631871 -39151682 - Tigger3b DNA MER2_type -119 1113 975 677 168 18 0 chr11 111631868 111631981 -39151572 - Tigger3b DNA MER2_type -1089 142 28 * 229 316 53 0 chr11 111632496 111632610 -39150943 + L2 LINE L2 2428 2547 -767 206 296 0 37 chr11 111632703 111632784 -39150769 + MIR SINE MIR 185 262 0 273 29 0 0 chr11 111632896 111632930 -39150623 + (TG)n Simple_repeat Simple_repeat 2 35 0 322 219 0 0 chr11 111633389 111633462 -39150091 - L1MC4 LINE L1 -4 8038 7966 303 255 123 9 chr11 111634854 111634960 -39148593 - MER82 DNA MER2_type -29 624 507 467 288 8 30 chr11 111635956 111636088 -39147465 - L2 LINE L2 -1 3312 3184 56737 83 12 13 chr11 111736097 111739914 -39043639 - HERVK11 LTR ERVK -513 7440 3569 186 308 62 0 chr11 111739914 111739979 -39043574 - MIR SINE MIR -76 132 64 56737 83 12 13 chr11 111739979 111743545 -39040008 - HERVK11 LTR ERVK -4384 3569 1 4019 71 17 53 chr11 111743545 111744624 -39038929 - MER11A LTR ERVK 0 1266 1 9732 217 87 10 chr11 111745506 111748592 -39034961 - L1 LINE L1 -3453 3335 14 2420 88 0 0 chr11 111749191 111749498 -39034055 - AluY SINE Alu -4 307 1 22 0 0 0 chr11 111749522 111749544 -39034009 + AT_rich Low_complexity Low_complexity 1 22 0 268 323 131 0 chr11 111749740 111749870 -39033683 + L1MEd LINE L1 4 150 -5969 774 263 110 50 chr11 111750059 111750801 -39032752 + L1MEd LINE L1 563 1379 -4896 509 211 130 0 chr11 111751134 111751205 -39032348 - LTR52 LTR ERVL -1 420 360 216 0 0 0 chr11 111751205 111751229 -39032324 + (CA)n Simple_repeat Simple_repeat 2 25 0 509 211 130 0 chr11 111751229 111751280 -39032273 - LTR52 LTR ERVL -61 360 282 2502 55 7 3 chr11 111751280 111751590 -39031963 + AluY SINE Alu 1 311 0 1243 193 60 25 chr11 111751738 111752023 -39031530 - LTR52 LTR ERVL -126 295 1 1071 204 20 0 chr11 111752023 111752219 -39031334 - LTR52-int LTR ERVL 0 3556 3357 1722 173 15 102 chr11 111752223 111752623 -39030930 + MLT1A1 LTR MaLR 1 365 0 1048 218 50 20 chr11 111752794 111753088 -39030465 - MLT1B LTR MaLR -61 313 1 493 183 86 0 chr11 111753088 111753181 -39030372 - HERVL74 LTR ERVL -3757 1928 1828 2300 106 0 3 chr11 111753184 111753486 -39030067 + AluSx SINE Alu 1 301 -11 47404 89 30 25 chr11 111753493 111763592 -39019961 - HERV9 LTR ERV1 0 8399 17 4926 89 13 175 chr11 111763592 111765194 -39018359 - pTR5 LTR ERV1 0 2606 1524 3180 197 40 12 chr11 111765193 111765869 -39017684 - HERVL74 LTR ERVL -3861 1824 1130 * 253 239 0 23 chr11 111765919 111766007 -39017546 + CT-rich Low_complexity Low_complexity 3 88 0 531 192 32 56 chr11 111766038 111766163 -39017390 - HERVL74 LTR ERVL -2587 969 848 313 234 64 11 chr11 111766160 111766254 -39017299 - HERVL74 LTR ERVL -2853 703 605 * 189 0 0 0 chr11 111766254 111766275 -39017278 + (CAG)n Simple_repeat Simple_repeat 3 23 0 1629 232 114 8 chr11 111766287 111766765 -39016788 - HERVL74 LTR ERVL -2994 562 3 425 256 58 0 chr11 111766774 111766911 -39016642 + LTR52 LTR ERVL 187 331 -90 450 0 0 0 chr11 111766913 111766963 -39016590 + (TG)n Simple_repeat Simple_repeat 1 50 0 305 267 95 0 chr11 111767169 111767274 -39016279 + L1MEc LINE L1 2160 2274 -4122 395 225 35 92 chr11 111767324 111767497 -39016056 + L1MEc LINE L1 2317 2479 -3736 2134 180 91 30 chr11 111767497 111767959 -39015594 + LTR2B LTR ERV1 1 490 0 2645 127 5 0 chr11 111767959 111768344 -39015209 + Harlequin LTR ERV1 1 387 -6509 793 141 0 42 chr11 111768337 111768479 -39015074 + HERV17 LTR ERV1 262 397 -7416 * 5126 101 32 17 chr11 111768450 111769261 -39014292 + HERV17 LTR ERV1 256 1078 -5818 273 95 48 0 chr11 111769262 111769325 -39014228 + GA-rich Low_complexity Low_complexity 1 66 0 1656 154 117 49 chr11 111769330 111769908 -39013645 + HERV17 LTR ERV1 704 1416 -5480 * 4013 108 42 23 chr11 111769901 111770631 -39012922 + HERV17 LTR ERV1 1817 2560 -4336 34409 72 5 3 chr11 111770696 111775033 -39008520 + HERV17 LTR ERV1 2552 6896 0 1829 184 68 46 chr11 111775033 111775242 -39008311 + LTR2 LTR ERV1 1 204 -245 186 43 0 0 chr11 111775242 111775265 -39008288 + (TTCTG)n Simple_repeat Simple_repeat 1 23 0 1829 184 68 46 chr11 111775265 111775494 -39008059 + LTR2 LTR ERV1 204 449 0 258 256 0 0 chr11 111775592 111775670 -39007883 + (TA)n Simple_repeat Simple_repeat 1 78 0 714 298 113 11 chr11 111775675 111776047 -39007506 + L1ME3 LINE L1 5542 5951 -211 22 0 0 0 chr11 111776079 111776101 -39007452 + AT_rich Low_complexity Low_complexity 1 22 0 473 17 0 0 chr11 111776309 111776367 -39007186 - L1PA2 LINE L1 -2 6153 6096 24 32 0 0 chr11 111776373 111776404 -39007149 + AT_rich Low_complexity Low_complexity 1 31 0 225 0 0 0 chr11 111778533 111778558 -39004995 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1967 149 0 0 chr11 111778562 111778857 -39004696 - AluSx SINE Alu -17 295 1 354 331 60 43 chr11 111779266 111779450 -39004103 - MIR SINE MIR -56 206 20 21 0 0 0 chr11 111779553 111779574 -39003979 + AT_rich Low_complexity Low_complexity 1 21 0 258 32 0 0 chr11 111779618 111779649 -39003904 + (TC)n Simple_repeat Simple_repeat 1 31 0 185 286 77 22 chr11 111779723 111779814 -39003739 - L2 LINE L2 -245 3027 2932 216 364 34 68 chr11 111780413 111780531 -39003022 - MER91A DNA MER1_type -82 114 1 * 239 312 13 13 chr11 111780531 111780592 -39002961 + MER5A DNA MER1_type 60 120 -69 210 71 0 0 chr11 111780705 111780733 -39002820 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 299 399 71 25 chr11 111780871 111781152 -39002401 - L2 LINE L2 -167 3105 2812 377 248 13 46 chr11 111781330 111781483 -39002070 + CT-rich Low_complexity Low_complexity 1 148 0 320 344 66 16 chr11 111781503 111781625 -39001928 - L2 LINE L2 -9 3263 3136 389 294 48 8 chr11 111781842 111781968 -39001585 - MIR SINE MIR -58 204 74 338 305 85 27 chr11 111782057 111782280 -39001273 - L2 LINE L2 -830 2484 2249 21 0 0 0 chr11 111782446 111782467 -39001086 + AT_rich Low_complexity Low_complexity 1 21 0 203 361 93 9 chr11 111782554 111782662 -39000891 - MIR SINE MIR -126 136 20 233 329 215 13 chr11 111783015 111783164 -39000389 + L2 LINE L2 2770 2948 -366 22 80 0 0 chr11 111785026 111785076 -38998477 + AT_rich Low_complexity Low_complexity 1 50 0 347 104 0 0 chr11 111785545 111785593 -38997960 - Alu SINE Alu -11 291 244 219 306 67 90 chr11 111787410 111787472 -38996081 - MIR SINE MIR -62 146 84 2266 104 0 3 chr11 111787472 111787769 -38995784 + AluSq SINE Alu 1 296 -17 219 306 67 90 chr11 111787769 111787840 -38995713 - MIR SINE MIR -124 84 16 2382 81 0 10 chr11 111788752 111789050 -38994503 + AluSg SINE Alu 1 295 -15 312 308 39 10 chr11 111789385 111789489 -38994064 + L2 LINE L2 2255 2361 -953 288 279 132 0 chr11 111789525 111789661 -38993892 - L1ME LINE L1 -649 5517 5364 219 393 49 0 chr11 111789662 111789784 -38993769 + L2 LINE L2 3145 3272 0 298 324 9 9 chr11 111789986 111790094 -38993459 + MIR SINE MIR 4 111 -151 31 26 0 0 chr11 111790683 111790721 -38992832 + AT_rich Low_complexity Low_complexity 1 38 0 5138 77 84 1 chr11 111790726 111791413 -38992140 - L1PA8 LINE L1 -4 6168 5425 530 285 149 18 chr11 111791733 111791954 -38991599 - MIR SINE MIR -6 256 7 420 348 50 20 chr11 111792247 111792546 -38991007 - L2 LINE L2 -676 2638 2331 269 278 0 0 chr11 111792784 111792838 -38990715 + MLT1J1 LTR MaLR 225 278 -168 2047 98 87 0 chr11 111793887 111794174 -38989379 + AluSx SINE Alu 1 312 0 2539 303 39 14 chr11 111795015 111795877 -38987676 + HERV16 LTR ERVL 695 1578 -3418 1466 243 150 29 chr11 111795938 111796055 -38987498 + HERV16 LTR ERVL 1732 1834 -3162 632 188 119 84 chr11 111796055 111796257 -38987296 - MER63A DNA MER1_type -1 209 1 1466 243 150 29 chr11 111796257 111796620 -38986933 + HERV16 LTR ERVL 1834 2270 -2726 334 292 21 56 chr11 111796634 111796780 -38986773 + LTR16B LTR ERVL 127 267 -197 228 322 44 33 chr11 111796923 111797013 -38986540 + L2 LINE L2 3000 3090 -182 1401 182 80 7 chr11 111797143 111797418 -38986135 - AluJb SINE Alu -15 297 3 791 145 32 0 chr11 111797549 111797673 -38985880 + FLAM_C SINE Alu 1 128 -5 249 33 0 0 chr11 111797757 111797787 -38985766 + (TA)n Simple_repeat Simple_repeat 1 30 0 1659 173 61 0 chr11 111798385 111798663 -38984890 - AluJb SINE Alu -17 295 1 263 254 192 39 chr11 111799351 111799481 -38984072 + MIR SINE MIR 103 252 -10 421 302 179 0 chr11 111799518 111799730 -38983823 - MIR SINE MIR -2 260 11 2156 118 0 0 chr11 111800671 111800967 -38982586 + AluSx SINE Alu 1 296 -16 233 257 181 38 chr11 111801564 111801669 -38981884 - MLT1J LTR MaLR -160 351 232 216 263 10 30 chr11 111802293 111802392 -38981161 + T-rich Low_complexity Low_complexity 4 100 0 3249 33 0 0 chr11 111802392 111802782 -38980771 - L1PA2 LINE L1 0 6155 5766 4766 55 8 0 chr11 111802782 111803386 -38980167 - L1P LINE L1 -5537 609 1 1876 130 3 3 chr11 111803390 111803674 -38979879 - L1PA15 LINE L1 -13 6152 5869 38 51 0 0 chr11 111803900 111803959 -38979594 + AT_rich Low_complexity Low_complexity 1 59 0 292 266 38 0 chr11 111804493 111804572 -38978981 + CT-rich Low_complexity Low_complexity 6 87 0 183 195 24 0 chr11 111804575 111804616 -38978937 - L2 LINE L2 -9 3304 3263 406 295 68 26 chr11 111804781 111804971 -38978582 + MIR SINE MIR 65 262 0 27 29 0 0 chr11 111805057 111805091 -38978462 + AT_rich Low_complexity Low_complexity 1 34 0 1003 304 46 37 chr11 111805411 111805954 -38977599 - L1MC4a LINE L1 -1849 5959 5412 2097 192 3 3 chr11 111805988 111806352 -38977201 + MLT1A1 LTR MaLR 1 364 -1 906 321 189 40 chr11 111806552 111806966 -38976587 + L2 LINE L2 1050 1401 -1913 1753 137 88 31 chr11 111806966 111807317 -38976236 + THE1C LTR MaLR 5 375 0 906 321 189 40 chr11 111807317 111808067 -38975486 + L2 LINE L2 1401 2038 -1276 1632 195 0 7 chr11 111808067 111808349 -38975204 - AluJo SINE Alu -32 280 1 906 321 189 40 chr11 111808349 111808774 -38974779 + L2 LINE L2 2038 2877 -437 2914 183 72 34 chr11 111809081 111809502 -38974051 - L1MB7 LINE L1 -15 6169 5712 2148 124 0 0 chr11 111809502 111809801 -38973752 - AluSx SINE Alu -13 299 1 2914 183 72 34 chr11 111809801 111810050 -38973503 - L1MB7 LINE L1 -472 5712 5474 485 198 93 6 chr11 111810056 111810228 -38973325 - L1MB7 LINE L1 -2840 3306 3120 653 297 36 49 chr11 111810228 111810660 -38972893 - LTR35 LTR ERV1 0 556 152 2107 215 76 50 chr11 111810729 111810956 -38972597 - L1MB7 LINE L1 -3023 3123 2903 2076 137 0 28 chr11 111810956 111811277 -38972276 - AluSx SINE Alu 0 312 1 2107 215 76 50 chr11 111811277 111811862 -38971691 - L1MB7 LINE L1 -3243 2903 2290 754 192 99 16 chr11 111811868 111812049 -38971504 - LTR52 LTR ERVL -16 405 210 392 134 15 0 chr11 111812049 111812116 -38971437 + MLT2B3 LTR ERVL 1 68 -486 2172 160 26 128 chr11 111812188 111812758 -38970795 + MLT2B3 LTR ERVL 25 554 0 536 303 183 18 chr11 111812843 111813226 -38970327 + L2 LINE L2 1319 1764 -1550 953 126 7 0 chr11 111813232 111813375 -38970178 + Tigger4(Zombi) DNA MER2_type 2586 2729 -2 14598 170 63 3 chr11 111813687 111814043 -38969510 - L1PB1 LINE L1 -1 6866 6533 288 0 0 0 chr11 111814043 111814075 -38969478 + (TG)n Simple_repeat Simple_repeat 2 33 0 14598 170 63 3 chr11 111814075 111820219 -38963334 - L1PB1 LINE L1 -334 6533 6 259 261 113 26 chr11 111820814 111820929 -38962624 - L2 LINE L2 -52 3261 3137 27 49 0 0 chr11 111821952 111821993 -38961560 + AT_rich Low_complexity Low_complexity 1 41 0 198 150 0 0 chr11 111822034 111822074 -38961479 + (TG)n Simple_repeat Simple_repeat 1 40 0 295 314 34 17 chr11 111822474 111822592 -38960961 - LTR16A LTR ERVL -234 216 97 * 635 151 6 87 chr11 111822584 111822756 -38960797 - MER96B DNA MER1_type? -236 181 24 356 319 57 7 chr11 111823515 111823656 -38959897 - HAL1 LINE L1 -985 1522 1375 565 289 52 66 chr11 111823695 111823932 -38959621 - L1MEd LINE L1 -4930 1189 950 2458 89 8 19 chr11 111823932 111824291 -38959262 + THE1A LTR MaLR 1 355 0 565 289 52 66 chr11 111824291 111824302 -38959251 - L1MEd LINE L1 -5169 950 940 2545 58 0 0 chr11 111824302 111824597 -38958956 - AluY SINE Alu -16 295 1 565 289 52 66 chr11 111824597 111824997 -38958556 - L1MEd LINE L1 -5179 940 549 757 290 79 22 chr11 111825119 111825485 -38958068 - L1MC4 LINE L1 -91 7951 7565 2201 110 7 0 chr11 111825553 111825844 -38957709 + AluSx SINE Alu 1 293 -19 741 178 26 0 chr11 111825856 111826008 -38957545 - L1MA7 LINE L1 -39 6252 6097 254 137 0 0 chr11 111826002 111826053 -38957500 + L1MA7 LINE L1 6241 6291 0 * 215 338 29 0 chr11 111826316 111826384 -38957169 - L3 LINE CR1 -538 1039 970 21 0 0 0 chr11 111826384 111826405 -38957148 + AT_rich Low_complexity Low_complexity 1 21 0 356 338 121 35 chr11 111826470 111826816 -38956737 - L3 LINE CR1 -635 942 567 384 309 22 22 chr11 111827143 111827282 -38956271 - MER5A DNA MER1_type -1 188 50 407 375 59 20 chr11 111827691 111827979 -38955574 - L1ME4a LINE L1 -229 5892 5582 2084 151 0 0 chr11 111827979 111828284 -38955269 - AluSx SINE Alu -7 305 1 407 375 59 20 chr11 111828284 111828403 -38955150 - L1ME4a LINE L1 -539 5582 5469 482 297 27 89 chr11 111828595 111828947 -38954606 - MLT1I LTR MaLR -16 393 94 245 306 93 22 chr11 111829074 111829257 -38954296 + L2 LINE L2 3115 3310 -3 549 219 112 54 chr11 111829827 111830087 -38953466 - ORSL DNA AcHobo 0 275 1 213 154 0 0 chr11 111830302 111830341 -38953212 + (TA)n Simple_repeat Simple_repeat 2 40 0 222 371 0 10 chr11 111830345 111830442 -38953111 - L2 LINE L2 -9 3304 3209 193 163 23 58 chr11 111830740 111830826 -38952727 + GA-rich Low_complexity Low_complexity 4 86 0 245 87 0 22 chr11 111831085 111831131 -38952422 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 2791 30 0 0 chr11 111831131 111831459 -38952094 - L1PA3 LINE L1 -24 6131 5804 2135 92 4 4 chr11 111831769 111832087 -38951466 - AluY SINE Alu 0 318 1 198 271 17 17 chr11 111832377 111832436 -38951117 - MIR SINE MIR -151 111 53 241 143 0 0 chr11 111833337 111833379 -38950174 - L1MA9 LINE L1 -1 6311 6270 * 314 126 146 39 chr11 111833378 111833481 -38950072 - L1M4 LINE L1 -848 5298 5185 2215 65 31 0 chr11 111833505 111833799 -38949754 - L1PB1 LINE L1 -1 6150 5848 9722 210 22 6 chr11 111833815 111836051 -38947502 - L1M4 LINE L1 -1191 4955 2683 * 21114 166 29 20 chr11 111836047 111836935 -38946618 - L1 LINE L1 -2028 5537 4658 2241 98 7 0 chr11 111836935 111837221 -38946332 - AluSq SINE Alu -25 288 1 21114 166 29 20 chr11 111837221 111838729 -38944824 - L1 LINE L1 -2907 4658 3165 1618 116 42 141 chr11 111838729 111838802 -38944751 - THE1B LTR MaLR 0 364 285 1582 134 0 5 chr11 111838802 111839025 -38944528 + AluSc SINE Alu 67 288 -21 1618 116 42 141 chr11 111839025 111839355 -38944198 - THE1B LTR MaLR -79 285 1 11657 94 5 0 chr11 111839355 111840926 -38942627 - THE1B-int LTR MaLR 0 1580 2 2486 104 27 33 chr11 111840926 111841292 -38942261 - THE1B LTR MaLR 0 364 1 21114 166 29 20 chr11 111841292 111844382 -38939171 - L1 LINE L1 -4399 3166 1 22 0 0 0 chr11 111844649 111844671 -38938882 + AT_rich Low_complexity Low_complexity 1 22 0 315 323 40 0 chr11 111844810 111844934 -38938619 - MER94 DNA DNA -2 132 4 311 203 0 0 chr11 111845142 111845206 -38938347 + L1PA12 LINE L1 6092 6155 -13 198 0 0 0 chr11 111845213 111845235 -38938318 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 240 239 110 18 chr11 111846188 111846297 -38937256 - L1ME4a LINE L1 -4 6117 5999 298 313 40 30 chr11 111849069 111849168 -38934385 + MIR SINE MIR 7 106 -156 276 268 52 10 chr11 111849208 111849305 -38934248 + L2 LINE L2 3210 3310 -3 1944 154 20 46 chr11 111850008 111850353 -38933200 - MER1B DNA MER1_type -1 336 1 229 354 0 0 chr11 111851144 111851240 -38932313 - MIR SINE MIR -43 219 124 300 292 0 14 chr11 111851849 111851921 -38931632 - MIR SINE MIR -191 71 1 251 295 48 38 chr11 111852007 111852112 -38931441 + L3 LINE CR1 1437 1542 -35 4964 179 39 2 chr11 111852141 111853010 -38930543 + MER54A LTR ERVL 9 901 0 6694 174 22 42 chr11 111853089 111855540 -38928013 + L1PA15 LINE L1 3771 6162 -3 219 151 19 38 chr11 111855793 111855846 -38927707 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 361 257 118 18 chr11 111855880 111856048 -38927505 - MIR SINE MIR -50 212 30 3746 259 79 16 chr11 111856142 111857558 -38925995 - L1MEc LINE L1 -4736 1479 30 207 286 11 55 chr11 111857703 111857794 -38925759 + L2 LINE L2 3227 3313 0 428 79 0 0 chr11 111857982 111858045 -38925508 + Alu SINE Alu 239 301 -10 192 40 0 0 chr11 111858165 111858190 -38925363 + (TC)n Simple_repeat Simple_repeat 2 26 0 191 36 36 0 chr11 111860468 111860496 -38923057 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 242 348 110 46 chr11 111860499 111860936 -38922617 - L2 LINE L2 -14 3299 2835 489 292 56 0 chr11 111860953 111861097 -38922456 - MIR SINE MIR -5 257 106 187 372 63 58 chr11 111861087 111861702 -38921851 - L2 LINE L2 -479 2835 2218 * 1888 122 36 7 chr11 111862320 111862623 -38920930 - AluSx SINE Alu 0 312 1 285 280 0 0 chr11 111862907 111862982 -38920571 + (TA)n Simple_repeat Simple_repeat 2 76 0 268 191 17 113 chr11 111863018 111863062 -38920491 + L1MA8 LINE L1 6184 6231 -60 2163 86 3 33 chr11 111863062 111863365 -38920188 - AluSq SINE Alu -19 294 1 268 191 17 113 chr11 111863365 111863435 -38920118 + L1MA8 LINE L1 6231 6287 -4 334 236 67 11 chr11 111863594 111863683 -38919870 + MIR3 SINE MIR 108 201 -7 21 0 0 0 chr11 111864648 111864669 -38918884 + AT_rich Low_complexity Low_complexity 1 21 0 298 283 121 20 chr11 111864924 111865023 -38918530 + L2 LINE L2 3158 3266 -6 5338 151 9 6 chr11 111865263 111866799 -38916754 - L1PB4 LINE L1 -6 6150 4611 731 258 72 0 chr11 111867040 111867249 -38916304 + MIR SINE MIR 38 261 -1 494 321 19 0 chr11 111867619 111867778 -38915775 - MIR3 SINE MIR -2 206 45 423 0 0 0 chr11 111867915 111867962 -38915591 + (TG)n Simple_repeat Simple_repeat 2 48 0 2102 117 0 0 chr11 111867969 111868250 -38915303 - AluSx SINE Alu -31 281 1 22 0 0 0 chr11 111868486 111868508 -38915045 + AT_rich Low_complexity Low_complexity 1 22 0 244 302 66 28 chr11 111869305 111869411 -38914142 - L2 LINE L2 -8 3264 3155 1241 122 5 0 chr11 111869713 111869901 -38913652 - L1PB4 LINE L1 -4 6152 5964 403 295 38 0 chr11 111869960 111870065 -38913488 - L2 LINE L2 -16 3256 3148 208 427 104 29 chr11 111870306 111870622 -38912931 - L2 LINE L2 0 3272 2933 681 239 80 30 chr11 111870826 111871090 -38912463 - LTR16A1 LTR ERVL -8 449 173 323 342 63 6 chr11 111872447 111872605 -38910948 + MER5B DNA MER1_type 7 173 -5 311 296 42 79 chr11 111873162 111873378 -38910175 + L1MC/D LINE L1 5170 5377 -769 802 296 113 26 chr11 111873380 111873759 -38909794 + L2 LINE L2 2902 3313 0 242 264 109 59 chr11 111873940 111874128 -38909425 + L1MC/D LINE L1 5671 5867 -403 21 0 0 0 chr11 111874169 111874190 -38909363 + AT_rich Low_complexity Low_complexity 1 21 0 471 279 18 0 chr11 111874932 111875043 -38908510 + MER81 DNA DNA 2 114 0 381 214 29 100 chr11 111875062 111875202 -38908351 - L2 LINE L2 -5 3308 3179 483 286 27 32 chr11 111875878 111876063 -38907490 + MIR3 SINE MIR 18 201 -7 2029 149 0 9 chr11 111876595 111876910 -38906643 + AluSx SINE Alu 1 312 0 188 354 24 24 chr11 111877128 111877210 -38906343 + MIR SINE MIR 24 105 -103 255 330 9 45 chr11 111878444 111878455 -38905098 - MIR SINE MIR -154 108 98 2059 116 3 26 chr11 111878455 111878766 -38904787 + AluSc SINE Alu 1 304 -5 255 330 9 45 chr11 111878766 111878866 -38904687 - MIR SINE MIR -164 98 1 7003 172 41 33 chr11 111878904 111879296 -38904257 + L1MA3 LINE L1 3073 3460 -2845 1744 149 182 11 chr11 111879296 111879658 -38903895 + MSTA LTR MaLR 1 424 -4 7003 172 41 33 chr11 111879658 111880197 -38903356 + L1MA3 LINE L1 3460 3993 -2312 899 112 8 8 chr11 111880197 111880331 -38903222 - THE1C LTR MaLR 0 375 242 409 89 0 0 chr11 111880339 111880395 -38903158 - THE1C LTR MaLR -372 56 1 7003 172 41 33 chr11 111880395 111882602 -38900951 + L1MA3 LINE L1 3999 6305 0 29 47 0 0 chr11 111882618 111882661 -38900892 + AT_rich Low_complexity Low_complexity 1 43 0 801 182 0 0 chr11 111882840 111882988 -38900565 + L1 LINE L1 4904 5051 -1095 340 308 8 43 chr11 111883556 111883673 -38899880 - L2 LINE L2 -1 3312 3200 271 236 9 9 chr11 111884817 111884927 -38898626 + GA-rich Low_complexity Low_complexity 1 110 0 307 349 47 31 chr11 111885211 111885340 -38898213 + L2 LINE L2 3137 3267 -5 2007 132 58 25 chr11 111886197 111886560 -38896993 + THE1C LTR MaLR 1 375 0 503 279 35 51 chr11 111886664 111886861 -38896692 + MIR SINE MIR 56 249 -13 304 243 0 14 chr11 111886887 111886957 -38896596 + MIR SINE MIR 124 192 -70 198 264 0 0 chr11 111887028 111887081 -38896472 - L2 LINE L2 0 3313 3261 6886 86 10 2 chr11 111887105 111888842 -38894711 - L1PA7 LINE L1 -3 6151 4402 869 101 0 0 chr11 111888844 111888973 -38894580 + L1P LINE L1 2841 2969 -3177 * 17787 140 15 87 chr11 111888970 111892856 -38890697 - L1PA7 LINE L1 -2538 3608 2 299 332 30 45 chr11 111892900 111893102 -38890451 + MIR SINE MIR 25 223 -39 2021 149 0 0 chr11 111893678 111893973 -38889580 + AluSx SINE Alu 1 295 -17 1620 203 3 19 chr11 111894908 111895218 -38888335 + AluJo SINE Alu 1 305 -7 601 203 0 86 chr11 111895657 111895820 -38887733 + MIR SINE MIR 111 259 -3 190 315 0 0 chr11 111895832 111895905 -38887648 - L2 LINE L2 -574 2740 2668 370 324 98 12 chr11 111896033 111896206 -38887347 - MIR3 SINE MIR -6 202 15 537 86 0 0 chr11 111896953 111897023 -38886530 - AluSc SINE Alu -18 291 222 7245 39 21 0 chr11 111897077 111898000 -38885553 - L1PA5 LINE L1 -6 6148 5213 17878 44 29 8 chr11 111897989 111900319 -38883234 - L1PA5 LINE L1 -1254 4892 2514 7261 54 77 0 chr11 111900326 111901305 -38882248 + L1PA5 LINE L1 1459 2512 -3634 289 269 15 0 chr11 111902274 111902341 -38881212 + MIR SINE MIR 46 113 -95 703 313 184 9 chr11 111902403 111902729 -38880824 - L2 LINE L2 -557 2757 2375 314 302 201 0 chr11 111902925 111903084 -38880469 - MLT1L LTR MaLR -225 390 200 227 172 35 69 chr11 111903144 111903202 -38880351 - MLT1L LTR MaLR -540 75 20 278 361 71 12 chr11 111903225 111903394 -38880159 - L2 LINE L2 -428 2886 2708 232 314 92 21 chr11 111904050 111904289 -38879264 + L1MEd LINE L1 614 869 -5250 * 1826 123 18 32 chr11 111904285 111904626 -38878927 + L1PB4 LINE L1 5601 5936 -220 341 333 45 8 chr11 111904730 111904862 -38878691 + L1MEd LINE L1 986 1122 -4997 1149 216 7 114 chr11 111904880 111905311 -38878242 + MSTD LTR MaLR 1 385 -11 207 308 154 10 chr11 111905452 111905556 -38877997 + L2 LINE L2 3195 3313 0 183 309 0 18 chr11 111905695 111905750 -38877803 - MIR SINE MIR -135 73 20 251 315 140 6 chr11 111907070 111907248 -38876305 + MIR SINE MIR 26 227 -35 340 284 144 24 chr11 111907546 111908046 -38875507 - L1MEc LINE L1 -3009 3206 2647 492 313 88 42 chr11 111908235 111908401 -38875152 - L1MEc LINE L1 -3913 2483 2326 1053 150 0 0 chr11 111908401 111908581 -38874972 + (TA)n Simple_repeat Simple_repeat 1 180 0 622 111 10 0 chr11 111908587 111908686 -38874867 - L1PA13 LINE L1 -1 6162 6063 492 313 88 42 chr11 111908686 111909353 -38874200 - L1MEc LINE L1 -4074 2322 1604 25 0 0 0 chr11 111909355 111909380 -38874173 + AT_rich Low_complexity Low_complexity 1 25 0 1757 259 94 24 chr11 111909380 111910089 -38873464 - L1ME3A LINE L1 -9 6161 5403 313 305 142 66 chr11 111910303 111910605 -38872948 - L1MEc LINE L1 -5736 469 145 414 303 86 53 chr11 111910733 111911551 -38872002 - L1MEd LINE L1 -4862 1257 487 330 382 35 12 chr11 111912093 111912263 -38871290 + L2 LINE L2 2732 2905 -409 1567 172 19 0 chr11 111912781 111913049 -38870504 + MLT2D LTR ERVL 1 273 -141 21 36 0 0 chr11 111913049 111913077 -38870476 + AT_rich Low_complexity Low_complexity 1 28 0 277 122 0 0 chr11 111913128 111913169 -38870384 + MLT2B1 LTR ERVL 480 520 0 24 0 0 0 chr11 111913410 111913434 -38870119 + AT_rich Low_complexity Low_complexity 1 24 0 192 273 0 0 chr11 111914906 111914972 -38868581 + (TATATG)n Simple_repeat Simple_repeat 6 71 0 225 211 0 0 chr11 111915079 111915131 -38868422 + (TA)n Simple_repeat Simple_repeat 2 53 0 180 77 0 0 chr11 111915232 111915258 -38868295 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 24 32 0 0 chr11 111916187 111916218 -38867335 + AT_rich Low_complexity Low_complexity 1 31 0 7015 61 23 5 chr11 111916218 111917408 -38866145 - L1PA7 LINE L1 0 6154 4957 1304 132 4 36 chr11 111917408 111917659 -38865894 + AluY SINE Alu 63 305 -6 12376 82 7 69 chr11 111917659 111919679 -38863874 - L1P LINE L1 -1174 4972 3079 393 375 22 88 chr11 111919788 111920135 -38863418 - L2 LINE L2 -4 3268 2949 324 0 0 0 chr11 111920135 111920171 -38863382 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 393 375 22 88 chr11 111920171 111920223 -38863330 - L2 LINE L2 -323 2949 2895 479 242 68 15 chr11 111920358 111920490 -38863063 - MER5B DNA MER1_type -3 175 37 262 272 190 2 chr11 111920622 111920762 -38862791 + MIR3 SINE MIR 14 178 -60 293 284 130 19 chr11 111921021 111921183 -38862370 + MLT1L LTR MaLR 432 611 -4 569 241 89 6 chr11 111921530 111921688 -38861865 + MIR SINE MIR 66 236 -26 5465 142 22 2 chr11 111922952 111924208 -38859345 + L1PA13 LINE L1 4834 6157 -6 22 0 0 0 chr11 111924408 111924430 -38859123 + AT_rich Low_complexity Low_complexity 1 22 0 664 154 42 7 chr11 111924537 111924680 -38858873 - L1P LINE L1 -2136 4010 3863 419 117 0 117 chr11 111924680 111924774 -38858779 - L1MA9 LINE L1 -116 6196 6114 499 264 110 18 chr11 111924869 111925032 -38858521 + MIR SINE MIR 8 185 -77 22 0 0 0 chr11 111925052 111925074 -38858479 + AT_rich Low_complexity Low_complexity 1 22 0 1975 186 3 19 chr11 111925742 111926113 -38857440 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr11 111926892 111926913 -38856640 + AT_rich Low_complexity Low_complexity 1 21 0 1117 197 33 5 chr11 111927328 111927541 -38856012 + MER20 DNA MER1_type 1 219 0 207 329 0 27 chr11 111928460 111928533 -38855020 - L2 LINE L2 -20 3252 3182 347 291 114 39 chr11 111928571 111928825 -38854728 + L2 LINE L2 2480 2752 -562 448 286 154 72 chr11 111928924 111929620 -38853933 - L1M4 LINE L1 -2721 3425 2673 184 150 0 75 chr11 111929744 111929784 -38853769 - L2 LINE L2 -2501 813 777 278 331 102 36 chr11 111929838 111930004 -38853549 - L2 LINE L2 -2821 493 317 489 214 38 15 chr11 111930018 111930149 -38853404 - MER94 DNA DNA 0 134 1 618 330 139 52 chr11 111930283 111930801 -38852752 + L2 LINE L2 1385 1857 -1457 2103 196 122 81 chr11 111930801 111931594 -38851959 + LTR1B LTR ERV1 1 826 0 618 330 139 52 chr11 111931594 111932374 -38851179 + L2 LINE L2 1857 2796 -518 22 35 0 0 chr11 111933749 111933778 -38849775 + AT_rich Low_complexity Low_complexity 1 29 0 955 148 64 10 chr11 111933805 111934007 -38849546 - L1MA5 LINE L1 0 6300 6088 6000 95 22 9 chr11 111934007 111934938 -38848615 + L1PA14 LINE L1 5219 6161 0 645 178 27 7 chr11 111934949 111935095 -38848458 - L1MA5 LINE L1 -207 6093 5945 245 293 31 29 chr11 111985095 111985165 -38798388 + MIR SINE MIR 75 143 -69 227 141 62 0 chr11 111985639 111985703 -38797850 + (TA)n Simple_repeat Simple_repeat 1 68 0 3487 128 2 20 chr11 111985766 111986303 -38797250 - MER1A DNA MER1_type 0 527 1 277 325 48 53 chr11 111986921 111987127 -38796426 + L3 LINE CR1 380 584 -993 224 69 103 0 chr11 111987176 111987234 -38796319 + T-rich Low_complexity Low_complexity 3 66 0 418 330 125 53 chr11 111987357 111987926 -38795627 + L1 LINE L1 3882 4491 -1655 366 59 42 8 chr11 111988438 111988516 -38795037 + Alu SINE Alu 232 281 -20 1162 236 13 0 chr11 111988516 111988826 -38794727 + L1 LINE L1 2777 3090 -3056 26930 54 6 1 chr11 111988927 111993155 -38790398 + L1PA6 LINE L1 1900 6149 -5 2667 147 34 23 chr11 111993174 111993740 -38789813 + L1P LINE L1 2995 3566 -2580 6593 175 33 7 chr11 111993842 111995189 -38788364 + L1 LINE L1 3289 4671 -1475 357 125 94 0 chr11 111995189 111995253 -38788300 + MLT2B3 LTR ERVL 1 70 -484 1970 216 45 39 chr11 111995336 111995803 -38787750 + MLT2B3 LTR ERVL 70 539 -15 1024 139 0 0 chr11 111995803 111995975 -38787578 + L1 LINE L1 4660 4831 -1315 26 0 0 0 chr11 111995975 111996001 -38787552 + AT_rich Low_complexity Low_complexity 1 26 0 356 206 75 0 chr11 111996096 111996213 -38787340 - L1MC4a LINE L1 -811 6997 6888 240 114 45 0 chr11 111996229 111996273 -38787280 - L1MC4a LINE L1 -1951 5857 5812 594 288 24 12 chr11 111996309 111996479 -38787074 + MER58A DNA MER1_type 1 172 -52 484 272 23 46 chr11 111996527 111996648 -38786905 - L1MC4a LINE L1 -2028 5780 5663 2443 90 34 8 chr11 111996648 111997003 -38786550 + THE1B LTR MaLR 1 364 0 484 272 23 46 chr11 111997003 111997054 -38786499 - L1MC4a LINE L1 -2145 5663 5612 331 264 23 8 chr11 111997215 111997344 -38786209 - L1ME LINE L1 -5066 1004 874 321 209 76 0 chr11 111997476 111997581 -38785972 - L1ME LINE L1 -5282 788 676 1614 82 5 0 chr11 112000089 112000297 -38783256 - AluSp SINE Alu -5 308 100 3192 86 25 25 chr11 112000318 112000806 -38782747 + L1MA3 LINE L1 5818 6305 0 1197 298 98 31 chr11 112000832 112001163 -38782390 - L1ME LINE L1 -5442 628 242 2376 51 24 7 chr11 112001163 112001457 -38782096 - AluY SINE Alu -12 299 1 1197 298 98 31 chr11 112001457 112001696 -38781857 - L1ME LINE L1 -5828 242 20 239 243 149 20 chr11 112001709 112001857 -38781696 + L1MDa LINE L1 1689 1855 -4685 456 329 86 27 chr11 112001938 112002822 -38780731 - L1MC4a LINE L1 -1108 5038 4103 561 299 73 33 chr11 112002844 112003325 -38780228 + L1MDa LINE L1 3611 4110 -2430 377 246 57 16 chr11 112003543 112003665 -38779888 + MLT1H LTR MaLR 25 151 -398 754 328 80 32 chr11 112003724 112004124 -38779429 + L2 LINE L2 2881 3299 -14 22 70 0 0 chr11 112004555 112004598 -38778955 + AT_rich Low_complexity Low_complexity 1 43 0 251 275 29 0 chr11 112005450 112005519 -38778034 - L2 LINE L2 -9 3263 3193 3160 121 35 62 chr11 112005919 112006483 -38777070 + LTR8 LTR ERV1 32 580 -111 378 0 0 0 chr11 112006484 112006526 -38777027 + (CA)n Simple_repeat Simple_repeat 1 42 0 384 279 82 16 chr11 112007544 112007788 -38775765 - L1ME4a LINE L1 -75 6046 5787 379 288 27 55 chr11 112008045 112008191 -38775362 - L2 LINE L2 -201 3071 2930 302 353 189 0 chr11 112008509 112008710 -38774843 - L3 LINE CR1 -975 602 364 667 221 97 14 chr11 112009571 112009716 -38773837 - FAM SINE Alu -18 157 1 270 330 43 17 chr11 112010329 112010444 -38773109 + MIR3 SINE MIR 81 198 -10 23 33 0 0 chr11 112010526 112010556 -38772997 + AT_rich Low_complexity Low_complexity 1 30 0 1904 158 29 0 chr11 112012111 112012422 -38771131 - MER7A DNA MER2_type -28 318 1 2359 78 0 0 chr11 112012623 112012906 -38770647 + AluSg SINE Alu 11 293 -17 22 0 0 0 chr11 112013408 112013430 -38770123 + AT_rich Low_complexity Low_complexity 1 22 0 237 301 65 0 chr11 112014462 112014555 -38768998 - L2 LINE L2 -16 3256 3158 2144 121 0 0 chr11 112014810 112015091 -38768462 + AluSx SINE Alu 1 281 -31 311 235 98 101 chr11 112015205 112015270 -38768283 - L1ME LINE L1 -4796 1284 1220 2123 121 0 3 chr11 112015270 112015567 -38767986 - AluSg SINE Alu -14 296 1 311 235 98 101 chr11 112015567 112015939 -38767614 - L1ME LINE L1 -4860 1220 848 21 0 0 0 chr11 112016003 112016024 -38767529 + AT_rich Low_complexity Low_complexity 1 21 0 16294 161 80 36 chr11 112016024 112019216 -38764337 - L1MA2 LINE L1 0 7723 4672 2022 155 0 3 chr11 112019216 112019525 -38764028 - AluSx SINE Alu -4 308 1 16294 161 80 36 chr11 112019525 112019633 -38763920 - L1MA2 LINE L1 -3051 4672 4570 2248 110 0 19 chr11 112019633 112019941 -38763612 - AluSg SINE Alu -8 302 1 16294 161 80 36 chr11 112019941 112021111 -38762442 - L1MA2 LINE L1 -3153 4570 3452 5899 110 52 0 chr11 112021111 112022227 -38761326 - L1PA11 LINE L1 -7 6167 5023 16294 161 80 36 chr11 112022227 112025113 -38758440 - L1MA2 LINE L1 -4271 3452 17 633 229 58 84 chr11 112025146 112025421 -38758132 - LTR41 LTR ERVL 0 773 506 255 286 0 66 chr11 112025606 112025697 -38757856 - LTR41 LTR ERVL -586 187 103 1185 181 15 15 chr11 112025697 112025902 -38757651 + AluJo SINE Alu 87 291 -21 269 261 99 5 chr11 112025908 112026019 -38757534 - LTR50 LTR ERVL -652 121 8 593 242 55 35 chr11 112026019 112026275 -38757278 - L1ME LINE L1 -5306 764 504 747 272 35 64 chr11 112026430 112026853 -38756700 - L1ME LINE L1 -5545 525 115 341 269 116 65 chr11 112027971 112028246 -38755307 - L1ME LINE L1 -326 5795 5507 642 266 61 26 chr11 112028299 112028528 -38755025 - MIR SINE MIR -8 254 18 1947 320 95 21 chr11 112028600 112029503 -38754050 + L2 LINE L2 2003 3014 -299 994 173 58 19 chr11 112029503 112029711 -38753842 + MER20 DNA MER1_type 1 216 -3 1947 320 95 21 chr11 112029711 112029985 -38753568 + L2 LINE L2 3014 3266 -47 311 271 71 156 chr11 112031351 112031801 -38751752 + MLT1J LTR MaLR 3 414 -97 1651 154 3 82 chr11 112031801 112032119 -38751434 - AluJb SINE Alu -19 293 1 234 0 0 0 chr11 112032128 112032154 -38751399 + (T)n Simple_repeat Simple_repeat 1 26 0 247 294 0 0 chr11 112032156 112032224 -38751329 + MLT1J LTR MaLR 420 487 -24 2220 226 43 31 chr11 112032260 112032843 -38750710 + MLT1E LTR MaLR 4 593 0 319 308 197 17 chr11 112035074 112035191 -38748362 - MER5A DNA MER1_type -42 147 10 21 0 0 0 chr11 112036703 112036724 -38746829 + AT_rich Low_complexity Low_complexity 1 21 0 43959 41 4 3 chr11 112037404 112043552 -38740001 - L1PA3 LINE L1 -3 6152 2 244 217 12 12 chr11 112044214 112044297 -38739256 + CT-rich Low_complexity Low_complexity 1 83 0 239 297 219 0 chr11 112044369 112044484 -38739069 + MIR SINE MIR 19 152 -65 303 28 0 0 chr11 112045539 112045575 -38737978 + (TG)n Simple_repeat Simple_repeat 2 37 0 221 344 98 16 chr11 112045705 112045827 -38737726 + L3 LINE CR1 140 271 -1306 545 198 60 0 chr11 112046202 112046318 -38737235 + L2 LINE L2 1705 1827 -1487 712 209 22 0 chr11 112046321 112046455 -38737098 - MER45A DNA AcHobo -2 176 40 3428 254 61 31 chr11 112046462 112046739 -38736814 + L2 LINE L2 1815 2082 -1231 1300 215 196 30 chr11 112046739 112047172 -38736381 + MLT1D LTR MaLR 1 505 0 3428 254 61 31 chr11 112047172 112048339 -38735214 + L2 LINE L2 2082 3308 -5 1977 181 50 10 chr11 112048498 112048896 -38734657 + L1PB4 LINE L1 5737 6150 -6 1033 200 37 0 chr11 112049008 112049198 -38734355 + MER20 DNA MER1_type 8 204 -15 1367 264 38 15 chr11 112049199 112049252 -38734301 - L1MEc LINE L1 -3461 2754 2704 2380 111 11 3 chr11 112049252 112049604 -38733949 - THE1A LTR MaLR 0 355 1 1367 264 38 15 chr11 112049604 112050180 -38733373 - L1MEc LINE L1 -3511 2704 2155 2057 210 38 101 chr11 112050226 112050637 -38732916 + MLT1E1 LTR MaLR 1 245 -310 1962 178 25 11 chr11 112050637 112050997 -38732556 + MLT1A1 LTR MaLR 1 365 0 2057 210 38 101 chr11 112050997 112051251 -38732302 + MLT1E1 LTR MaLR 245 513 -42 376 308 25 0 chr11 112051260 112051380 -38732173 - MIR SINE MIR -137 125 3 1627 193 33 3 chr11 112052233 112052534 -38731019 - AluJo SINE Alu -2 310 1 318 269 103 7 chr11 112052711 112052847 -38730706 - MIR SINE MIR -65 143 22 8304 56 1 0 chr11 112054055 112055020 -38728533 + LTR5 LTR ERVK 1 966 -3 46822 14 1 0 chr11 112055023 112060549 -38723004 + HERVK LTR ERVK 1 5533 -1710 13915 15 0 1 chr11 112060794 112062457 -38721096 + HERVK LTR ERVK 5533 7148 -95 420 74 11 168 chr11 112062457 112062552 -38721001 + SVA Other Other 857 936 -450 8332 54 1 0 chr11 112062552 112063517 -38720036 + LTR5 LTR ERVK 1 966 -3 371 282 92 49 chr11 112063692 112063855 -38719698 - MIR SINE MIR -70 192 23 353 281 83 54 chr11 112063890 112064132 -38719421 + MLT1L LTR MaLR 3 251 -364 1870 167 20 105 chr11 112064200 112064697 -38718856 + LTR32 LTR ERVL 13 467 -4 230 313 106 23 chr11 112064746 112065002 -38718551 + MLT1L LTR MaLR 331 607 -8 21 82 0 0 chr11 112065511 112065560 -38717993 + AT_rich Low_complexity Low_complexity 1 49 0 397 200 0 0 chr11 112065971 112066046 -38717507 + THE1B LTR MaLR 289 363 -1 11314 98 11 8 chr11 112066047 112067622 -38715931 + THE1B-int LTR MaLR 1 1580 0 2047 117 91 24 chr11 112067622 112067963 -38715590 + THE1B LTR MaLR 1 364 0 1967 180 128 46 chr11 112068043 112068520 -38715033 - MLT2B1 LTR ERVL 0 520 5 639 293 106 61 chr11 112068989 112069497 -38714056 + L1MEd LINE L1 573 1103 -5016 8188 172 17 27 chr11 112069522 112071648 -38711905 + L1PA16 LINE L1 3240 5387 -779 1840 155 26 57 chr11 112071648 112072035 -38711518 - THE1C LTR MaLR 0 375 1 8188 172 17 27 chr11 112072035 112072712 -38710841 + L1PA16 LINE L1 5387 6017 -149 2364 115 36 17 chr11 112072712 112073069 -38710484 - THE1B LTR MaLR 0 364 1 8188 172 17 27 chr11 112073069 112073213 -38710340 + L1PA16 LINE L1 6017 6161 -5 563 320 46 13 chr11 112073365 112073759 -38709794 + L1ME3A LINE L1 5550 5956 -214 2420 196 81 33 chr11 112074395 112075050 -38708503 + L1MB7 LINE L1 5443 6136 -48 2310 108 3 0 chr11 112075050 112075357 -38708196 + AluSq SINE Alu 1 308 -5 2420 196 81 33 chr11 112075357 112075406 -38708147 + L1MB7 LINE L1 6136 6181 -3 619 281 170 14 chr11 112075644 112076086 -38707467 + LTR33A LTR ERVL 2 512 -11 283 342 89 81 chr11 112076814 112077261 -38706292 - L2 LINE L2 -5 3267 2817 257 315 103 56 chr11 112077505 112077718 -38705835 + MIR SINE MIR 3 225 -37 242 238 32 0 chr11 112077913 112077976 -38705577 + L2 LINE L2 3249 3313 0 809 283 67 27 chr11 112078440 112078811 -38704742 + LTR16C LTR ERVL 88 473 -18 180 233 0 0 chr11 112078904 112078934 -38704619 - L2 LINE L2 -219 3053 3024 189 0 0 0 chr11 112079046 112079067 -38704486 + (A)n Simple_repeat Simple_repeat 1 21 0 577 350 32 45 chr11 112079067 112079507 -38704046 - L2 LINE L2 -237 3035 2594 460 354 34 5 chr11 112079512 112079718 -38703835 + MIR SINE MIR 17 228 -34 256 345 59 0 chr11 112080454 112080573 -38702980 + L3 LINE CR1 1344 1469 -108 376 277 15 29 chr11 112080763 112080900 -38702653 + MER20B DNA MER1_type 1 135 -648 21 0 0 0 chr11 112081651 112081672 -38701881 + AT_rich Low_complexity Low_complexity 1 21 0 1622 217 25 8 chr11 112081895 112082254 -38701299 + MLT1A1 LTR MaLR 1 365 0 353 260 31 10 chr11 112082742 112082838 -38700715 - LTR33 LTR ERVL 0 521 424 39 38 0 0 chr11 112083190 112083243 -38700310 + AT_rich Low_complexity Low_complexity 1 53 0 324 341 14 42 chr11 112083610 112083824 -38699729 + L1ME4a LINE L1 4384 4591 -1555 539 290 130 19 chr11 112084063 112084325 -38699228 + L1ME4a LINE L1 5730 6020 -101 293 225 20 8 chr11 112084732 112084981 -38698572 + GA-rich Low_complexity Low_complexity 1 252 0 21 36 0 0 chr11 112085252 112085280 -38698273 + AT_rich Low_complexity Low_complexity 1 28 0 499 306 47 24 chr11 112085401 112085571 -38697982 + MIR3 SINE MIR 4 177 -31 28 29 0 0 chr11 112085748 112085783 -38697770 + AT_rich Low_complexity Low_complexity 1 35 0 187 323 133 19 chr11 112086579 112086737 -38696816 + MIR SINE MIR 20 195 -67 1811 158 4 4 chr11 112086985 112087258 -38696295 + AluJo SINE Alu 23 295 -17 1209 123 12 0 chr11 112087455 112087618 -38695935 + AluSg/x SINE Alu 129 293 -19 214 278 19 0 chr11 112087935 112087989 -38695564 + MIR3 SINE MIR 121 175 -33 3652 209 61 26 chr11 112088126 112089937 -38693616 - L1MB8 LINE L1 -2 6176 4296 21 71 0 0 chr11 112089965 112090007 -38693546 + AT_rich Low_complexity Low_complexity 1 42 0 29 28 0 0 chr11 112091693 112091729 -38691824 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr11 112092035 112092058 -38691495 + AT_rich Low_complexity Low_complexity 1 23 0 390 207 73 0 chr11 112092070 112092152 -38691401 + L2 LINE L2 3226 3313 0 2369 112 0 0 chr11 112092269 112092573 -38690980 + AluSx SINE Alu 1 304 -8 1450 130 21 18 chr11 112092793 112093077 -38690476 + L1MA8 LINE L1 6007 6291 0 1502 122 0 26 chr11 112093237 112093466 -38690087 + AluSc SINE Alu 35 257 -52 772 265 119 6 chr11 112093672 112094015 -38689538 + LTR33A LTR ERVL 138 519 -4 258 269 193 12 chr11 112094034 112094205 -38689348 - MIR SINE MIR -20 242 41 827 240 120 50 chr11 112095865 112096349 -38687204 + LTR33A LTR ERVL 4 521 -2 346 143 0 0 chr11 112096577 112096640 -38686913 - L1MA6 LINE L1 0 6300 6238 180 0 0 0 chr11 112097668 112097688 -38685865 + (A)n Simple_repeat Simple_repeat 1 20 0 201 259 0 35 chr11 112098688 112098746 -38684807 - MIR SINE MIR -95 167 112 1983 144 14 23 chr11 112098836 112099182 -38684371 - MER61A LTR ERV1 0 343 1 476 288 97 9 chr11 112099470 112099696 -38683857 + MIR SINE MIR 1 246 -16 309 251 82 18 chr11 112099777 112099907 -38683646 - MIR SINE MIR -65 143 16 1743 235 47 19 chr11 112099986 112100458 -38683095 - MER41E LTR ERV1 -7 505 21 2009 128 20 7 chr11 112100483 112100779 -38682774 - AluSc SINE Alu -9 300 1 292 327 163 0 chr11 112100958 112101111 -38682442 - MIR SINE MIR -1 261 84 316 296 130 9 chr11 112101197 112101305 -38682248 + MIR SINE MIR 118 238 -24 409 303 42 104 chr11 112101731 112102038 -38681515 - L2 LINE L2 0 3272 2985 269 351 69 86 chr11 112102793 112103141 -38680412 - L2 LINE L2 -14 3258 2917 1421 165 85 33 chr11 112103173 112103445 -38680108 + AluJo SINE Alu 1 286 -26 221 0 35 0 chr11 112103462 112103491 -38680062 + (TAGA)n Simple_repeat Simple_repeat 3 32 0 647 104 24 16 chr11 112103497 112103622 -38679931 + GA-rich Low_complexity Low_complexity 4 129 0 345 337 43 21 chr11 112103761 112103948 -38679605 - L2 LINE L2 -2497 817 627 340 286 88 34 chr11 112104262 112104409 -38679144 + MIR SINE MIR 108 262 0 202 287 48 54 chr11 112104474 112104641 -38678912 + L2 LINE L2 1596 1761 -1553 966 136 0 0 chr11 112104682 112104814 -38678739 + FRAM SINE Alu 2 133 -43 201 74 0 0 chr11 112104816 112104843 -38678710 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 221 371 91 11 chr11 112104894 112105069 -38678484 + L2 LINE L2 1836 2024 -1290 192 349 16 0 chr11 112105094 112105157 -38678396 + L2 LINE L2 3245 3308 -5 884 301 40 21 chr11 112106175 112106550 -38677003 - LTR16A LTR ERVL -5 445 64 22 0 0 0 chr11 112107409 112107431 -38676122 + AT_rich Low_complexity Low_complexity 1 22 0 240 352 77 60 chr11 112107536 112107718 -38675835 + L2 LINE L2 3084 3268 -4 187 288 96 0 chr11 112107991 112108064 -38675489 + MIR SINE MIR 183 262 0 807 332 92 15 chr11 112108378 112108836 -38674717 - LTR33 LTR ERVL -28 493 1 23 0 0 0 chr11 112109627 112109650 -38673903 + AT_rich Low_complexity Low_complexity 1 23 0 2189 95 7 0 chr11 112109905 112110201 -38673352 - MLT2A2 LTR ERVL -155 298 1 559 255 59 19 chr11 112110201 112110369 -38673184 - L1ME2 LINE L1 -83 6081 5921 1982 119 7 4 chr11 112110369 112110691 -38672862 + AluSg1 SINE Alu 1 323 0 559 255 59 19 chr11 112110691 112111623 -38671930 - L1ME2 LINE L1 -243 5921 4736 338 272 99 56 chr11 112111788 112111950 -38671603 - L2 LINE L2 -13 3300 3132 672 332 81 16 chr11 112112108 112112503 -38671050 - L2 LINE L2 -252 3061 2649 2651 230 111 26 chr11 112112721 112113417 -38670136 + L1M2b LINE L1 3 757 -6452 2848 233 81 39 chr11 112113456 112114413 -38669140 + L1M2b LINE L1 1425 2421 -4788 1138 124 30 0 chr11 112114604 112114805 -38668748 + L1MA4 LINE L1 6088 6294 -6 279 54 0 0 chr11 112115174 112115211 -38668342 + (TG)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr11 112115210 112115230 -38668323 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 21 0 0 0 chr11 112115446 112115467 -38668086 + AT_rich Low_complexity Low_complexity 1 21 0 367 268 61 10 chr11 112116037 112116235 -38667318 + L1M2b LINE L1 4037 4244 -2964 312 301 121 29 chr11 112116419 112116592 -38666961 + L1M2b LINE L1 4488 4676 -2532 10050 218 38 35 chr11 112116639 112119816 -38663737 + L1PA10 LINE L1 4 3321 -3140 38098 80 16 7 chr11 112119819 112125894 -38657659 + L1PA6 LINE L1 15 6149 -5 13796 140 11 14 chr11 112125913 112128383 -38655170 + L1PA10 LINE L1 3310 5787 -696 1728 157 7 25 chr11 112128383 112128663 -38654890 + AluSx SINE Alu 1 275 -37 330 45 0 0 chr11 112128667 112128711 -38654842 + (GAAAA)n Simple_repeat Simple_repeat 1 44 0 13796 140 11 14 chr11 112128711 112129366 -38654187 + L1PA10 LINE L1 5790 6464 -19 324 278 0 0 chr11 112129436 112129533 -38654020 + L1M2b LINE L1 4858 4954 -2254 1777 170 94 0 chr11 112129538 112129868 -38653685 + MER47A DNA MER2_type 6 366 0 312 253 11 11 chr11 112129873 112129968 -38653585 + L1M2b LINE L1 4960 5054 -2154 426 132 0 0 chr11 112129989 112130057 -38653496 - AluS SINE Alu -12 297 230 1421 286 45 38 chr11 112130080 112130871 -38652682 + L1M2b LINE L1 5112 5908 -1300 332 197 15 15 chr11 112130871 112131003 -38652550 + (TA)n Simple_repeat Simple_repeat 1 132 0 1586 65 18 9 chr11 112131069 112131286 -38652267 + L1PA11 LINE L1 5948 6166 -8 724 272 45 19 chr11 112131296 112131605 -38651948 + L1M2b LINE L1 5952 6268 -940 912 317 124 18 chr11 112132500 112132945 -38650608 - L2 LINE L2 -783 2531 2040 49 72 0 22 chr11 112133176 112133314 -38650239 + AT_rich Low_complexity Low_complexity 1 135 0 1668 243 44 88 chr11 112133752 112134319 -38649234 + MLT1F1 LTR MaLR 1 567 0 7531 203 81 16 chr11 112134357 112136366 -38647187 + L1 LINE L1 2385 4523 -1623 526 174 11 0 chr11 112136366 112136458 -38647095 + MLT2B2 LTR ERVL 5 97 -418 421 232 144 39 chr11 112136503 112136788 -38646765 - L1MEc LINE L1 -4183 2213 1899 904 249 68 45 chr11 112136845 112137226 -38646327 - L1MEc LINE L1 -4603 1793 1404 2123 121 0 3 chr11 112137235 112137532 -38646021 - AluSg SINE Alu -14 296 1 231 61 0 0 chr11 112138171 112138204 -38645349 + (GA)n Simple_repeat Simple_repeat 1 33 0 3351 152 45 9 chr11 112138204 112138776 -38644777 + MER7C DNA MER2_type 8 600 -2 309 26 0 0 chr11 112138776 112138814 -38644739 + (TG)n Simple_repeat Simple_repeat 1 38 0 23 0 0 0 chr11 112139362 112139385 -38644168 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr11 112141012 112141034 -38642519 + (A)n Simple_repeat Simple_repeat 1 22 0 519 283 19 3 chr11 112141046 112141259 -38642294 + L1ME3A LINE L1 5747 5914 -264 23 0 0 0 chr11 112141276 112141299 -38642254 + AT_rich Low_complexity Low_complexity 1 23 0 198 103 0 0 chr11 112141469 112141498 -38642055 + (TA)n Simple_repeat Simple_repeat 2 30 0 38 0 0 0 chr11 112141531 112141569 -38641984 + AT_rich Low_complexity Low_complexity 1 38 0 261 316 76 0 chr11 112141685 112141764 -38641789 - L2 LINE L2 -45 3227 3143 1995 124 0 11 chr11 112142524 112142806 -38640747 + AluSx SINE Alu 14 292 -20 816 140 82 0 chr11 112143434 112143605 -38639948 - MER53 DNA DNA -2 187 3 996 291 89 25 chr11 112143974 112144687 -38638866 - L2 LINE L2 -40 3273 2511 613 297 24 0 chr11 112146550 112146762 -38636791 - L1MB7 LINE L1 -11 6173 5957 243 0 0 0 chr11 112146873 112146900 -38636653 + (TG)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr11 112146900 112146924 -38636629 + AT_rich Low_complexity Low_complexity 1 24 0 315 279 45 73 chr11 112147254 112147433 -38636120 + L1MEd LINE L1 710 883 -5236 1656 170 14 14 chr11 112147440 112147728 -38635825 - AluJo SINE Alu -22 290 3 330 308 113 20 chr11 112148843 112149038 -38634515 + L1MC4a LINE L1 5313 5525 -2283 207 0 0 0 chr11 112149065 112149088 -38634465 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1321 183 4 21 chr11 112149103 112149343 -38634210 - AluJo SINE Alu -74 238 3 234 156 0 0 chr11 112149500 112149545 -38634008 - Alu SINE Alu -2 299 255 397 312 82 30 chr11 112149548 112149779 -38633774 + L1MC4a LINE L1 5655 5897 -1911 396 247 52 13 chr11 112151203 112151357 -38632196 - L1MB7 LINE L1 -310 5811 5652 657 26 0 0 chr11 112151372 112151450 -38632103 + L1PA5 LINE L1 6064 6141 -13 30 0 0 0 chr11 112151454 112151484 -38632069 + AT_rich Low_complexity Low_complexity 1 30 0 240 290 32 91 chr11 112151486 112151707 -38631846 - L1MB7 LINE L1 -449 5672 5465 572 217 62 0 chr11 112152047 112152176 -38631377 - FRAM SINE Alu -8 168 32 21 36 0 0 chr11 112152355 112152383 -38631170 + AT_rich Low_complexity Low_complexity 1 28 0 2330 90 0 0 chr11 112154465 112154754 -38628799 - AluSx SINE Alu -23 289 1 375 289 93 54 chr11 112155269 112155498 -38628055 - MIR SINE MIR -19 243 8 368 300 73 33 chr11 112156170 112156320 -38627233 - L2 LINE L2 -3 3310 3155 736 245 128 50 chr11 112156347 112156706 -38626847 + MLT1J2 LTR MaLR 20 406 -44 887 278 119 23 chr11 112157520 112157799 -38625754 - LTR16C LTR ERVL -13 478 141 486 66 40 0 chr11 112157799 112157875 -38625678 + MADE1 DNA Mariner 1 79 -1 887 278 119 23 chr11 112157875 112158031 -38625522 - LTR16C LTR ERVL -350 141 1 254 292 130 12 chr11 112158768 112158929 -38624624 + L2 LINE L2 2197 2376 -938 25 0 0 0 chr11 112159176 112159201 -38624352 + AT_rich Low_complexity Low_complexity 1 25 0 283 277 0 69 chr11 112160116 112160246 -38623307 + L1MC4 LINE L1 7103 7223 -819 635 268 169 24 chr11 112160288 112160620 -38622933 - MLT1I LTR MaLR -21 388 9 598 269 138 76 chr11 112160803 112161093 -38622460 + LTR18A LTR ERVL 1 210 -147 461 264 9 0 chr11 112161200 112161310 -38622243 + LTR18A LTR ERVL 245 355 -2 268 283 60 18 chr11 112161377 112161543 -38622010 + L1MC4 LINE L1 7498 7670 -372 225 94 38 75 chr11 112162163 112162216 -38621337 - LTR33A LTR ERVL -420 103 53 683 171 53 18 chr11 112164498 112164668 -38618885 - LTR16C LTR ERVL -9 482 307 665 261 58 0 chr11 112165027 112165215 -38618338 - LTR16C LTR ERVL 0 491 293 1563 145 22 69 chr11 112165362 112165679 -38617874 - MLT1A1 LTR MaLR 0 365 64 204 40 0 0 chr11 112165978 112166003 -38617550 + (T)n Simple_repeat Simple_repeat 1 25 0 2388 81 0 10 chr11 112166133 112166443 -38617110 - AluY SINE Alu -4 307 1 309 274 111 26 chr11 112166812 112166965 -38616588 - L1ME LINE L1 -435 5686 5521 4355 96 14 2 chr11 112167312 112167935 -38615618 - L1PA12 LINE L1 -7 6161 5531 22 56 0 0 chr11 112168459 112168495 -38615058 + AT_rich Low_complexity Low_complexity 1 36 0 620 248 47 26 chr11 112168778 112169012 -38614541 - LTR33 LTR ERVL -6 515 277 331 298 40 8 chr11 112169049 112169173 -38614380 - LTR33 LTR ERVL -324 197 70 242 246 0 0 chr11 112169544 112169605 -38613948 + Alu SINE Alu 226 286 -15 187 283 141 11 chr11 112171706 112171798 -38611755 + L2 LINE L2 1761 1864 -1450 2379 131 8 8 chr11 112171941 112172316 -38611237 - THE1C LTR MaLR 0 375 1 10029 115 24 39 chr11 112172316 112173920 -38609633 - THE1C-int LTR MaLR 0 1580 1 2220 148 13 24 chr11 112173920 112174299 -38609254 - THE1C LTR MaLR 0 375 1 251 383 21 0 chr11 112175099 112175193 -38608360 + L2 LINE L2 3137 3232 -40 1919 263 81 19 chr11 112175529 112175597 -38607956 - L1MC4 LINE L1 -368 7674 7612 195 42 0 0 chr11 112175597 112175621 -38607932 + (CA)n Simple_repeat Simple_repeat 2 25 0 1919 263 81 19 chr11 112175621 112176389 -38607164 - L1MC4 LINE L1 -430 7612 6786 266 323 72 53 chr11 112176433 112176906 -38606647 + L2 LINE L2 2552 3021 -251 227 153 254 0 chr11 112177102 112177161 -38606392 - MER63 DNA MER1_type -134 702 3 1836 166 15 66 chr11 112177464 112177875 -38605678 + MLT1B LTR MaLR 1 390 0 413 279 164 18 chr11 112177998 112178217 -38605336 + MIR SINE MIR 12 262 0 21 57 0 0 chr11 112180294 112180329 -38603224 + AT_rich Low_complexity Low_complexity 1 35 0 316 285 6 57 chr11 112180693 112180851 -38602702 + LTR16C LTR ERVL 342 491 0 222 278 42 14 chr11 112180965 112181037 -38602516 - L2 LINE L2 0 3313 3240 265 237 0 0 chr11 112181064 112181123 -38602430 + MIR SINE MIR 183 241 -21 260 131 131 36 chr11 112181235 112181281 -38602272 - L1MD1 LINE L1 -2 6240 6200 1554 130 18 0 chr11 112181281 112181558 -38601995 + L1MA4 LINE L1 6019 6300 0 260 131 131 36 chr11 112181558 112181595 -38601958 - L1MD1 LINE L1 -42 6200 6149 2988 97 20 14 chr11 112181736 112182178 -38601375 + L1PA11 LINE L1 5728 6172 -2 1630 223 91 35 chr11 112182198 112182853 -38600700 - L1M4c LINE L1 -5434 1108 449 1159 108 69 4 chr11 112182881 112183112 -38600441 - L1P5 LINE L1 -655 5499 5254 2637 84 8 24 chr11 112183113 112183483 -38600070 + THE1B LTR MaLR 1 364 0 11603 102 4 1 chr11 112183483 112185059 -38598494 + THE1B-int LTR MaLR 1 1580 0 777 113 121 0 chr11 112185059 112185183 -38598370 + THE1B LTR MaLR 1 139 -225 11282 198 14 37 chr11 112185183 112187430 -38596123 - L1 LINE L1 -924 5222 3058 8960 166 56 24 chr11 112187430 112188991 -38594562 - L1PA13 LINE L1 -4 6159 4476 1990 136 0 7 chr11 112188991 112189277 -38594276 - AluSx SINE Alu -26 286 3 8960 166 56 24 chr11 112189277 112190325 -38593228 - L1PA13 LINE L1 -1687 4476 3463 11282 198 14 37 chr11 112190325 112191067 -38592486 - L1 LINE L1 -3088 3058 2301 1026 211 175 12 chr11 112192484 112192735 -38590818 - AluSc SINE Alu -7 292 1 1860 164 46 28 chr11 112193723 112194274 -38589279 - MLT2A2 LTR ERVL 0 554 2 2235 124 44 37 chr11 112194275 112194711 -38588842 + L1MA5 LINE L1 5860 6298 -2 292 167 39 20 chr11 112194985 112195087 -38588466 + GA-rich Low_complexity Low_complexity 3 106 0 590 39 13 0 chr11 112195088 112195165 -38588388 + (GGAA)n Simple_repeat Simple_repeat 4 81 0 210 333 138 8 chr11 112195255 112195378 -38588175 + L2 LINE L2 2479 2617 -697 27 62 0 0 chr11 112195669 112195717 -38587836 + AT_rich Low_complexity Low_complexity 1 48 0 226 176 0 20 chr11 112196266 112196317 -38587236 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 579 41 0 0 chr11 112196543 112196616 -38586937 - L1PA5 LINE L1 0 6154 6082 2093 106 7 0 chr11 112196674 112196956 -38586597 - AluSq SINE Alu -29 284 1 2253 91 37 0 chr11 112199081 112199377 -38584176 - AluSc SINE Alu -2 307 1 407 357 105 8 chr11 112200111 112200211 -38583342 + L2 LINE L2 1609 1698 -1616 285 29 0 0 chr11 112200211 112200245 -38583308 + (CA)n Simple_repeat Simple_repeat 1 34 0 407 357 105 8 chr11 112200245 112200536 -38583017 + L2 LINE L2 1698 2038 -1276 2101 127 0 3 chr11 112200552 112200852 -38582701 + AluSq SINE Alu 1 299 -14 591 250 21 0 chr11 112200859 112200999 -38582554 - LTR16A1 LTR ERVL -113 344 202 875 235 75 51 chr11 112201351 112201562 -38581991 - LTR16A1 LTR ERVL 0 457 236 2293 118 116 11 chr11 112201562 112201943 -38581610 + MSTB LTR MaLR 3 423 -3 875 235 75 51 chr11 112201943 112202025 -38581528 - LTR16A1 LTR ERVL -221 236 157 468 352 40 27 chr11 112202308 112203006 -38580547 - ERVL LTR ERVL -90 5389 4707 284 250 30 50 chr11 112203117 112203217 -38580336 - LTR16A1 LTR ERVL -359 98 1 328 320 96 0 chr11 112203329 112203454 -38580099 - HERV16 LTR ERVL -3693 1303 1167 437 127 0 14 chr11 112203457 112203528 -38580025 + LTR60 LTR ERV1 9 78 -508 366 385 26 0 chr11 112203720 112203912 -38579641 - HERV16 LTR ERVL -3993 1003 807 2847 156 4 22 chr11 112203940 112204447 -38579106 + L1MA4 LINE L1 5523 6020 -280 347 173 37 0 chr11 112204456 112204537 -38579016 + L1MB3 LINE L1 6090 6173 -10 3187 14 3 0 chr11 112204638 112205001 -38578552 + L1PA3 LINE L1 5540 5903 -252 373 160 30 40 chr11 112206069 112206169 -38577384 + L1PA15 LINE L1 6064 6162 -3 3628 52 23 104 chr11 112206241 112207093 -38576460 + L1P3 LINE L1 4964 5740 -414 216 0 0 0 chr11 112207241 112207265 -38576288 + (A)n Simple_repeat Simple_repeat 1 24 0 498 282 25 15 chr11 112207303 112207505 -38576048 + L1ME LINE L1 5552 5755 -366 1846 170 0 0 chr11 112207651 112207940 -38575613 + AluSx SINE Alu 5 293 -19 2225 122 0 0 chr11 112208120 112208414 -38575139 - AluSx SINE Alu -18 294 1 2051 123 14 0 chr11 112209568 112209861 -38573692 - AluSx SINE Alu -15 297 1 1897 112 4 7 chr11 112210184 112210453 -38573100 + AluSc SINE Alu 30 297 -12 208 184 0 20 chr11 112210566 112210615 -38572938 + T-rich Low_complexity Low_complexity 4 51 0 347 266 37 9 chr11 112212008 112212117 -38571436 + MIR SINE MIR 9 120 -142 224 325 25 0 chr11 112212425 112212505 -38571048 - MIR SINE MIR -62 146 65 212 217 17 17 chr11 112212726 112212786 -38570767 + (CATA)n Simple_repeat Simple_repeat 2 61 0 191 219 24 0 chr11 112212864 112212905 -38570648 + MIR3 SINE MIR 156 197 -11 1791 178 0 3 chr11 112213444 112213748 -38569805 + AluJb SINE Alu 6 308 -4 1979 173 25 6 chr11 112214374 112214732 -38568821 - MLT1A1 LTR MaLR 0 365 1 4221 243 58 61 chr11 112214737 112216106 -38567447 - MLT1A1-int LTR MaLR -6 1365 1 1675 228 78 9 chr11 112216111 112216533 -38567020 - MLT2B1 LTR ERVL -67 453 3 744 221 113 29 chr11 112216576 112216780 -38566773 + MER58A DNA MER1_type 1 221 -3 2561 85 21 31 chr11 112216927 112216941 -38566612 + L1PB1 LINE L1 5767 5780 -371 225 0 0 0 chr11 112216941 112216966 -38566587 + (TA)n Simple_repeat Simple_repeat 2 26 0 2561 85 21 31 chr11 112216966 112217339 -38566214 + L1PB1 LINE L1 5780 6150 -1 21 26 0 26 chr11 112217339 112217358 -38566195 + AT_rich Low_complexity Low_complexity 1 19 -19 5358 114 37 5 chr11 112217358 112218838 -38564715 + L1PA16 LINE L1 4643 6157 -9 21 26 0 26 chr11 112218838 112218857 -38564696 + AT_rich Low_complexity Low_complexity 19 38 0 1099 229 51 42 chr11 112218978 112219332 -38564221 + L1ME2 LINE L1 5543 5899 -265 495 254 0 16 chr11 112219337 112219459 -38564094 + L1ME2 LINE L1 5997 6116 -48 582 339 123 18 chr11 112219579 112219960 -38563593 + LTR16A LTR ERVL 26 446 -4 230 204 41 0 chr11 112220611 112220660 -38562893 - L2 LINE L2 0 3313 3263 13982 143 23 18 chr11 112220925 112223331 -38560222 + Tigger1 DNA MER2_type 1 2417 -1 592 311 5 10 chr11 112223491 112223700 -38559853 - LTR16B LTR ERVL -12 452 245 6960 39 0 1 chr11 112223744 112224589 -38558964 - L1PA4 LINE L1 -1950 4196 3353 * 9589 34 7 17 chr11 112224585 112226403 -38557150 + L1PA4 LINE L1 4198 5994 -161 1769 52 13 0 chr11 112226503 112226733 -38556820 + L1PA7 LINE L1 5919 6151 -3 26 64 0 0 chr11 112226805 112226852 -38556701 + AT_rich Low_complexity Low_complexity 1 47 0 192 163 0 0 chr11 112226867 112226910 -38556643 + (TA)n Simple_repeat Simple_repeat 1 43 0 27 29 0 0 chr11 112227030 112227064 -38556489 + AT_rich Low_complexity Low_complexity 1 34 0 522 319 6 0 chr11 112227373 112227533 -38556020 + MIR SINE MIR 100 260 -2 227 325 50 0 chr11 112227885 112227965 -38555588 - L3 LINE CR1 -2 1575 1492 416 342 79 31 chr11 112228024 112228252 -38555301 + MLT1K LTR MaLR 3 241 -347 342 96 19 0 chr11 112228378 112228430 -38555123 + MADE1 DNA Mariner 28 80 0 420 303 106 18 chr11 112229098 112229153 -38554400 - MIR SINE MIR -10 252 203 1729 159 46 0 chr11 112229153 112229436 -38554117 - AluSx SINE Alu -16 296 1 420 303 106 18 chr11 112229436 112229598 -38553955 - MIR SINE MIR -59 203 16 236 323 73 10 chr11 112230381 112230477 -38553076 + L2 LINE L2 3211 3312 -1 206 283 0 17 chr11 112230880 112230940 -38552613 - L2 LINE L2 -4 3309 3251 272 296 64 24 chr11 112231068 112231193 -38552360 - MIR SINE MIR -50 212 83 198 0 0 0 chr11 112231590 112231612 -38551941 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 222 324 42 21 chr11 112232693 112232835 -38550718 - MIR SINE MIR -114 148 4 26 0 0 0 chr11 112233023 112233049 -38550504 + AT_rich Low_complexity Low_complexity 1 26 0 1956 170 0 3 chr11 112233055 112233367 -38550186 + AluSx SINE Alu 1 311 -1 919 269 24 12 chr11 112233471 112233720 -38549833 - MIR SINE MIR -3 259 8 194 299 203 41 chr11 112233952 112234317 -38549236 - L2 LINE L2 -1360 1954 1531 507 200 40 0 chr11 112234847 112234947 -38548606 + MER5A DNA MER1_type 9 112 -77 2430 112 19 16 chr11 112235164 112235538 -38548015 + THE1C LTR MaLR 1 375 0 185 353 44 0 chr11 112235863 112235931 -38547622 + L2 LINE L2 3141 3211 -61 226 264 25 31 chr11 112235974 112236137 -38547416 + (TA)n Simple_repeat Simple_repeat 2 163 0 328 200 0 29 chr11 112237161 112237231 -38546322 + MLT2B1 LTR ERVL 1 68 -346 1999 134 11 58 chr11 112237233 112237598 -38545955 + L1PA16 LINE L1 5799 6146 -20 23 0 0 0 chr11 112237598 112237621 -38545932 + AT_rich Low_complexity Low_complexity 1 23 0 1738 193 47 57 chr11 112237628 112238011 -38545542 + MLT2B1 LTR ERVL 71 449 -71 1822 139 0 41 chr11 112238129 112238452 -38545101 + AluSx SINE Alu 1 311 0 325 241 204 0 chr11 112238658 112238766 -38544787 - MIR SINE MIR -40 222 93 253 380 15 58 chr11 112238759 112238929 -38544624 + MIR SINE MIR 61 222 -40 * 1723 29 0 0 chr11 112238929 112239136 -38544417 + L1PA4 LINE L1 5948 6154 -1 253 380 15 58 chr11 112239136 112239170 -38544383 + MIR SINE MIR 222 256 -6 2046 172 13 5 chr11 112240790 112241162 -38542391 - THE1C LTR MaLR 0 375 1 3470 143 31 8 chr11 112241851 112242439 -38541114 - MER7C DNA MER2_type 0 602 2 823 202 20 81 chr11 112242453 112242651 -38540902 - MER5A DNA MER1_type 0 189 4 1995 125 0 26 chr11 112243322 112243634 -38539919 + AluY SINE Alu 1 304 -7 851 154 8 0 chr11 112245080 112245210 -38538343 + AluSq/x SINE Alu 1 131 -181 13163 88 4 1 chr11 112245210 112246245 -38537308 + L1PA3 LINE L1 3528 4558 -1597 2222 107 3 0 chr11 112246245 112246535 -38537018 - AluSq SINE Alu -19 294 4 13163 88 4 1 chr11 112246535 112248123 -38535430 + L1PA3 LINE L1 4558 6155 0 2088 334 40 43 chr11 112248393 112249861 -38533692 - HERVL LTR ERVL -1468 4186 2723 272 330 0 27 chr11 112249889 112250001 -38533552 + ERVL LTR ERVL 2134 2242 -3522 971 314 53 43 chr11 112250052 112250584 -38532969 - HERVL LTR ERVL -2345 2651 2115 313 195 98 12 chr11 112250807 112250889 -38532664 + MER53 DNA DNA 1 89 -100 7394 42 0 0 chr11 112250905 112252438 -38531115 + L1PA5 LINE L1 4614 6145 -9 298 185 111 0 chr11 112252445 112252553 -38531000 - MER53 DNA DNA -47 142 23 * 382 157 0 0 chr11 112252492 112252562 -38530991 + MER53 DNA DNA 117 186 -3 299 327 51 33 chr11 112252568 112252782 -38530771 - HERVL LTR ERVL -3201 1795 1578 442 174 15 30 chr11 112253550 112253682 -38529871 + GA-rich Low_complexity Low_complexity 2 131 0 423 335 110 14 chr11 112254469 112254678 -38528875 + MIR SINE MIR 29 257 -5 2660 96 5 8 chr11 112254684 112255058 -38528495 - THE1C LTR MaLR 0 375 3 24 0 0 0 chr11 112255177 112255201 -38528352 + AT_rich Low_complexity Low_complexity 1 24 0 304 279 240 13 chr11 112255942 112256096 -38527457 - MER5A DNA MER1_type 0 189 1 310 226 60 12 chr11 112256110 112256194 -38527359 + MER5A DNA MER1_type 31 118 -71 698 266 23 0 chr11 112256252 112256425 -38527128 - MER5B DNA MER1_type 0 178 2 236 184 0 0 chr11 112256853 112256891 -38526662 - MER5A DNA MER1_type -6 183 146 324 213 79 102 chr11 112256951 112257016 -38526537 - MER5B DNA MER1_type 0 178 116 756 69 0 0 chr11 112257016 112257118 -38526435 + L1PA11 LINE L1 6072 6173 -1 324 213 79 102 chr11 112257118 112257179 -38526374 - MER5B DNA MER1_type -62 116 55 317 256 105 0 chr11 112258592 112258678 -38524875 + MIR SINE MIR 58 152 -56 1585 153 49 101 chr11 112258710 112258903 -38524650 + MLT2D LTR ERVL 1 202 -212 1619 165 19 32 chr11 112258903 112259272 -38524281 + L1MA8 LINE L1 5923 6286 -5 2238 99 0 0 chr11 112259282 112259576 -38523977 + AluSg SINE Alu 1 294 -16 1585 153 49 101 chr11 112259576 112259757 -38523796 + MLT2D LTR ERVL 211 366 -48 1276 300 22 25 chr11 112260264 112260499 -38523054 - HERVL LTR ERVL -2015 2981 2747 1660 186 51 9 chr11 112260499 112260849 -38522704 - MLT1A1 LTR MaLR 0 365 1 1276 300 22 25 chr11 112260849 112261464 -38522089 - HERVL LTR ERVL -2249 2747 2088 42122 40 3 1 chr11 112261472 112267610 -38515943 + L1PA3 LINE L1 8 6155 0 286 354 108 0 chr11 112267619 112267831 -38515722 - HERVL LTR ERVL -3611 2153 1919 2233 314 88 78 chr11 112268049 112269578 -38513975 - HERVL LTR ERVL -3451 1545 2 448 318 116 34 chr11 112269579 112269994 -38513559 - LTR16A LTR ERVL 0 450 2 1080 133 12 0 chr11 112270566 112270732 -38512821 - MSTA LTR MaLR 0 428 261 983 100 0 0 chr11 112270733 112270873 -38512680 - L1PB1 LINE L1 -218 5933 5794 295 143 0 0 chr11 112270973 112271022 -38512531 + Alu SINE Alu 248 296 -6 22 80 0 0 chr11 112272912 112272962 -38510591 + AT_rich Low_complexity Low_complexity 1 50 0 5768 211 47 37 chr11 112273106 112274180 -38509373 + L1M4 LINE L1 34 1096 -5446 380 20 20 0 chr11 112274180 112274229 -38509324 + (CA)n Simple_repeat Simple_repeat 1 50 0 5768 211 47 37 chr11 112274229 112274678 -38508875 + L1M4 LINE L1 1096 1576 -4966 1926 109 20 37 chr11 112274678 112274972 -38508581 + AluSq SINE Alu 1 289 -24 5768 211 47 37 chr11 112274972 112275069 -38508484 + L1M4 LINE L1 1576 1671 -4871 542 148 39 8 chr11 112275071 112275199 -38508354 + L1MB8 LINE L1 6046 6177 -1 1653 186 32 6 chr11 112275199 112275537 -38508016 + L1MB7 LINE L1 5813 6165 -19 1859 179 22 25 chr11 112277579 112277943 -38505610 - MLT1A1 LTR MaLR -2 363 1 271 330 55 0 chr11 112278474 112278583 -38504970 - L2 LINE L2 -5 3308 3194 2214 132 21 13 chr11 112280410 112280782 -38502771 - THE1C LTR MaLR 0 375 1 1770 148 41 0 chr11 112280939 112281257 -38502296 + L1MA7 LINE L1 5961 6291 0 184 309 131 0 chr11 112281356 112281440 -38502113 + MIR SINE MIR 48 142 -120 634 91 0 0 chr11 112281695 112281783 -38501770 - L1P4 LINE L1 -456 5712 5625 2099 171 133 2 chr11 112282698 112283165 -38500388 - Tigger3b DNA MER2_type 0 1232 705 2450 75 3 0 chr11 112283165 112283460 -38500093 - AluSp SINE Alu -17 296 1 6451 81 14 3 chr11 112283508 112284916 -38498637 - L1PA10 LINE L1 -2 6166 4740 11879 130 10 1 chr11 112284917 112286926 -38496627 - L1P4 LINE L1 -1308 4838 2813 3252 170 33 24 chr11 112286927 112287043 -38496510 - Tigger3b DNA MER2_type -2320 708 594 1958 160 0 22 chr11 112287043 112287361 -38496192 - AluSx SINE Alu -1 311 1 3252 170 33 24 chr11 112287361 112287945 -38495608 - Tigger3b DNA MER2_type -2434 594 2 480 135 90 0 chr11 112288035 112288124 -38495429 + MER4A LTR ERV1 2 98 -566 1357 150 33 76 chr11 112288124 112288485 -38495068 + MER4A LTR ERV1 261 664 0 244 57 0 0 chr11 112289149 112289184 -38494369 - LTR64 LTR ERVK -270 288 254 1537 141 57 4 chr11 112289185 112289448 -38494105 - LTR64 LTR ERVK -281 277 1 726 169 0 0 chr11 112289833 112289957 -38493596 - AluJb SINE Alu -10 302 179 565 215 35 14 chr11 112289962 112290106 -38493447 - L1PB4 LINE L1 -2 6154 6008 2947 144 47 6 chr11 112290464 112290957 -38492596 - LTR64 LTR ERVK 0 513 1 871 250 0 27 chr11 112293140 112293364 -38490189 - MER58A DNA MER1_type -6 218 1 286 284 0 0 chr11 112293778 112293845 -38489708 - LTR16C LTR ERVL -2 489 423 219 365 133 14 chr11 112294021 112294232 -38489321 + L2 LINE L2 581 816 -2498 454 280 124 28 chr11 112295208 112295426 -38488127 + MIR SINE MIR 23 261 -1 1961 225 47 45 chr11 112296184 112296805 -38486748 + MLT1E3 LTR MaLR 1 622 -2 2373 103 0 0 chr11 112297158 112297508 -38486045 + L1PA12 LINE L1 5749 6098 -70 438 20 0 0 chr11 112297520 112297571 -38485982 + (CA)n Simple_repeat Simple_repeat 2 52 0 920 126 6 28 chr11 112298171 112298353 -38485200 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 871 81 46 17 chr11 112298353 112298526 -38485027 + GA-rich Low_complexity Low_complexity 3 180 0 2039 126 0 3 chr11 112301269 112301581 -38481972 - AluSq SINE Alu 0 311 1 223 254 0 18 chr11 112301629 112301684 -38481869 - MIR SINE MIR -153 109 56 22 35 0 0 chr11 112302174 112302203 -38481350 + AT_rich Low_complexity Low_complexity 1 29 0 323 270 136 10 chr11 112303450 112303598 -38479955 + MIR3 SINE MIR 8 169 -39 432 0 0 0 chr11 112305207 112305255 -38478298 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 1747 133 3 39 chr11 112305257 112305412 -38478141 - AluSx SINE Alu -36 276 134 13163 88 8 6 chr11 112305412 112306995 -38476558 - L1PA7 LINE L1 -3 6151 4560 2222 107 3 0 chr11 112306995 112307285 -38476268 + AluSq SINE Alu 4 294 -19 13163 88 8 6 chr11 112307285 112308320 -38475233 - L1PA7 LINE L1 -1594 4560 3528 1747 133 3 39 chr11 112308320 112308450 -38475103 - AluSx SINE Alu -178 134 1 2109 70 0 79 chr11 112309897 112310227 -38473326 - AluY SINE Alu -7 304 1 182 254 15 0 chr11 112310970 112311037 -38472516 + (TA)n Simple_repeat Simple_repeat 2 69 0 35 71 0 0 chr11 112311544 112311614 -38471939 + AT_rich Low_complexity Low_complexity 1 70 0 181 260 27 55 chr11 112312541 112312614 -38470939 + MIR SINE MIR 160 230 -32 497 251 269 0 chr11 112312967 112313142 -38470411 - MIR SINE MIR -37 225 4 25 31 0 0 chr11 112313163 112313195 -38470358 + AT_rich Low_complexity Low_complexity 1 32 0 186 273 23 0 chr11 112314280 112314324 -38469229 + L2 LINE L2 2710 2754 -560 242 281 99 41 chr11 112314593 112314714 -38468839 + L2 LINE L2 3186 3313 0 315 251 141 16 chr11 112315512 112315703 -38467850 - L1MC4 LINE L1 -143 7899 7685 299 235 10 98 chr11 112315970 112316072 -38467481 - L2 LINE L2 0 3313 3221 252 86 0 0 chr11 112317232 112317267 -38466286 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2393 79 0 7 chr11 112317548 112317851 -38465702 + AluSx SINE Alu 2 302 -10 202 259 56 0 chr11 112318167 112318221 -38465332 + L2 LINE L2 3256 3312 -1 317 385 35 7 chr11 112318336 112318479 -38465074 + MIR SINE MIR 1 147 -115 682 267 102 32 chr11 112318825 112319140 -38464413 + MER93b LTR ERV1 1 337 -36 2412 78 3 0 chr11 112319179 112319475 -38464078 + AluSp SINE Alu 1 297 -16 198 0 0 0 chr11 112319475 112319497 -38464056 + (TA)n Simple_repeat Simple_repeat 2 23 0 1259 298 97 12 chr11 112319603 112320110 -38463443 + L2 LINE L2 2312 2861 -453 238 121 0 0 chr11 112320113 112320146 -38463407 + MSTA LTR MaLR 3 35 -393 546 307 3 16 chr11 112320146 112320477 -38463076 - AluSx SINE Alu 0 327 1 895 254 110 4 chr11 112320477 112320705 -38462848 + MSTA LTR MaLR 21 272 -156 24 0 0 0 chr11 112320823 112320847 -38462706 + GC_rich Low_complexity Low_complexity 1 24 0 2377 103 0 0 chr11 112320867 112321179 -38462374 - AluSx SINE Alu 0 312 1 2155 148 90 8 chr11 112321179 112321556 -38461997 + MSTA LTR MaLR 21 428 0 915 295 118 12 chr11 112321556 112321956 -38461597 + L2 LINE L2 2857 3298 -15 5287 140 37 9 chr11 112322436 112323331 -38460222 + MER49 LTR ERV1 3 922 -1 289 247 12 37 chr11 112326056 112326137 -38457416 - L2 LINE L2 -10 3262 3184 326 335 52 26 chr11 112326155 112326349 -38457204 + L2 LINE L2 1699 1897 -1417 432 0 0 0 chr11 112326782 112326830 -38456723 + (TG)n Simple_repeat Simple_repeat 1 48 0 187 182 114 23 chr11 112327045 112327089 -38456464 + L2 LINE L2 3265 3312 -1 21 0 0 0 chr11 112327352 112327373 -38456180 + AT_rich Low_complexity Low_complexity 1 21 0 1897 160 0 0 chr11 112327920 112328201 -38455352 + AluJb SINE Alu 1 281 -31 244 333 16 56 chr11 112328452 112328578 -38454975 - L2 LINE L2 -8 3305 3185 195 257 27 27 chr11 112328573 112328647 -38454906 - L2 LINE L2 -214 3058 2985 * 187 372 184 18 chr11 112328732 112328955 -38454598 - L2 LINE L2 -457 2857 2598 22 0 0 0 chr11 112329376 112329398 -38454155 + AT_rich Low_complexity Low_complexity 1 22 0 1930 157 0 7 chr11 112330360 112330659 -38452894 - AluJb SINE Alu -15 297 1 22 0 0 0 chr11 112330820 112330842 -38452711 + AT_rich Low_complexity Low_complexity 1 22 0 2267 113 0 0 chr11 112331178 112331478 -38452075 + AluSx SINE Alu 1 300 -12 2146 88 4 0 chr11 112331578 112331850 -38451703 - AluSq SINE Alu -40 273 1 2147 114 3 3 chr11 112331930 112332227 -38451326 - AluSg SINE Alu -13 297 1 293 238 143 124 chr11 112333525 112333735 -38449818 + MIR SINE MIR 20 233 -29 180 0 0 0 chr11 112334204 112334224 -38449329 + (TG)n Simple_repeat Simple_repeat 1 20 0 2011 132 0 7 chr11 112334225 112334514 -38449039 - AluSx SINE Alu -6 306 20 311 323 124 40 chr11 112334809 112335010 -38448543 - HAL1 LINE L1 -604 1903 1686 2165 92 28 0 chr11 112335254 112335536 -38448017 + AluSg1 SINE Alu 1 290 -19 306 73 0 0 chr11 112335536 112335577 -38447976 + (GGGA)n Simple_repeat Simple_repeat 3 43 0 186 273 23 0 chr11 112336414 112336458 -38447095 + L2 LINE L2 2710 2754 -560 242 281 99 41 chr11 112336727 112336848 -38446705 + L2 LINE L2 3186 3313 0 286 219 160 0 chr11 112337646 112337765 -38445788 - L1MC4 LINE L1 -143 7899 7762 299 235 10 98 chr11 112338104 112338206 -38445347 - L2 LINE L2 0 3313 3221 252 86 0 0 chr11 112339366 112339401 -38444152 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2264 94 0 3 chr11 112339682 112339980 -38443573 + AluSx SINE Alu 2 298 -14 2536 251 81 75 chr11 112339990 112340929 -38442624 + L1MCc LINE L1 186 1163 -5439 1558 146 4 20 chr11 112340929 112341205 -38442348 + AluJb SINE Alu 35 306 0 2536 251 81 75 chr11 112341205 112341760 -38441793 + L1MCc LINE L1 1163 1713 -4889 436 252 14 7 chr11 112341747 112341890 -38441663 + L1ME3A LINE L1 5808 5951 -219 * 879 127 223 55 chr11 112342212 112342432 -38441121 - AluJb SINE Alu -55 257 1 24 0 0 0 chr11 112342456 112342480 -38441073 + AT_rich Low_complexity Low_complexity 1 24 0 540 253 11 33 chr11 112342556 112342738 -38440815 + MARNA DNA Mariner 383 560 -26 358 328 65 15 chr11 112342857 112343058 -38440495 - L2 LINE L2 -12 3301 3091 1341 218 98 8 chr11 112343066 112343433 -38440120 - MLT1C LTR MaLR -67 400 1 22 0 0 0 chr11 112343561 112343583 -38439970 + AT_rich Low_complexity Low_complexity 1 22 0 222 227 0 0 chr11 112343666 112343710 -38439843 - L2 LINE L2 0 3313 3270 1510 158 92 18 chr11 112343806 112344078 -38439475 + AluJo SINE Alu 1 292 -20 366 290 156 21 chr11 112344130 112344316 -38439237 - MIR SINE MIR -32 230 20 207 404 0 0 chr11 112344615 112344709 -38438844 - L2 LINE L2 -206 3066 2973 * 480 307 205 35 chr11 112344704 112345245 -38438308 - L2 LINE L2 -461 2853 2221 431 175 113 88 chr11 112345314 112345508 -38438045 - MLT1J LTR MaLR -310 201 3 25 31 0 0 chr11 112345579 112345611 -38437942 + AT_rich Low_complexity Low_complexity 1 32 0 186 43 0 0 chr11 112345642 112345665 -38437888 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 860 144 0 0 chr11 112345669 112345787 -38437766 - FLAM_C SINE Alu -25 118 1 318 182 15 30 chr11 112346462 112346528 -38437025 + L2 LINE L2 3169 3233 -80 406 266 77 56 chr11 112346649 112346882 -38436671 + L2 LINE L2 2511 2748 -566 2193 103 0 3 chr11 112346884 112347176 -38436377 + AluSx SINE Alu 1 291 -21 30 0 0 0 chr11 112347176 112347206 -38436347 + AT_rich Low_complexity Low_complexity 1 30 0 2110 103 3 7 chr11 112347206 112347488 -38436065 + AluSp SINE Alu 1 281 -32 315 0 0 0 chr11 112347490 112347525 -38436028 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 642 197 7 29 chr11 112347541 112347678 -38435875 + FLAM_C SINE Alu 6 139 -4 247 224 132 26 chr11 112347918 112347994 -38435559 - MER63 DNA MER1_type 0 1062 979 358 87 301 97 chr11 112347995 112348098 -38435455 - MER63 DNA MER1_type -85 751 2 2089 137 7 0 chr11 112348389 112348689 -38434864 + AluSx SINE Alu 1 302 -10 2536 71 0 0 chr11 112348855 112349164 -38434389 - AluY SINE Alu -2 309 1 376 224 9 37 chr11 112349281 112349388 -38434165 + MLT1K LTR MaLR 479 582 -6 237 214 0 18 chr11 112349392 112349448 -38434105 + MIR SINE MIR 157 211 -51 2219 111 7 3 chr11 112349477 112349774 -38433779 + AluSx SINE Alu 1 298 -14 605 266 43 48 chr11 112349775 112349958 -38433595 + L1ME3 LINE L1 3043 3225 -2921 2185 107 3 0 chr11 112349958 112350256 -38433297 + AluSp SINE Alu 1 299 -14 605 266 43 48 chr11 112350256 112350444 -38433109 + L1ME3 LINE L1 3225 3412 -2734 1268 269 63 73 chr11 112350481 112350533 -38433020 + L1ME3 LINE L1 3545 3596 -2550 2286 108 0 0 chr11 112350533 112350829 -38432724 + AluSx SINE Alu 1 296 -16 1268 269 63 73 chr11 112350829 112351670 -38431883 + L1ME3 LINE L1 3596 4444 -1702 1818 152 21 7 chr11 112351670 112351960 -38431593 - AluSx SINE Alu -16 296 3 985 211 58 10 chr11 112351968 112352176 -38431377 - MER20 DNA MER1_type -1 218 1 1268 269 63 73 chr11 112352176 112352347 -38431206 + L1ME3 LINE L1 4451 4608 -1538 2347 92 0 3 chr11 112352354 112352659 -38430894 + AluSq SINE Alu 1 304 -9 201 74 0 0 chr11 112352826 112352853 -38430700 + (A)n Simple_repeat Simple_repeat 1 27 0 1731 269 92 16 chr11 112352873 112353352 -38430201 - L1MEc LINE L1 -3156 3059 2618 1528 192 8 0 chr11 112353352 112353612 -38429941 + AluJb SINE Alu 1 262 -50 1731 269 92 16 chr11 112353612 112354167 -38429386 - L1MEc LINE L1 -3597 2618 1991 2223 93 7 3 chr11 112354173 112354462 -38429091 - AluSg SINE Alu -20 290 1 1077 90 0 0 chr11 112354462 112354596 -38428957 - AluSg SINE Alu -176 134 1 26 64 0 0 chr11 112354678 112354725 -38428828 + AT_rich Low_complexity Low_complexity 1 47 0 387 271 8 15 chr11 112354791 112354822 -38428731 - L1MEc LINE L1 -4638 1758 1728 1617 190 3 17 chr11 112354822 112355117 -38428436 - AluJb SINE Alu -20 292 2 387 271 8 15 chr11 112355117 112355218 -38428335 - L1MEc LINE L1 -4668 1728 1627 612 165 55 0 chr11 112355238 112355347 -38428206 - FLAM_C SINE Alu -27 116 2 422 245 73 127 chr11 112355348 112355419 -38428134 - L1MEc LINE L1 -4751 1645 1572 1819 166 7 3 chr11 112355419 112355714 -38427839 - AluJo SINE Alu -16 296 1 422 245 73 127 chr11 112355714 112356217 -38427336 - L1MEc LINE L1 -4824 1572 1102 1951 248 127 14 chr11 112356450 112357531 -38426022 + L1ME3 LINE L1 4600 5829 -333 2166 61 69 4 chr11 112357722 112357999 -38425554 + AluSx SINE Alu 1 295 -17 225 94 0 0 chr11 112358099 112358131 -38425422 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 416 161 12 0 chr11 112359483 112359564 -38423989 + GA-rich Low_complexity Low_complexity 4 85 0 1512 145 9 4 chr11 112359826 112360054 -38423499 - AluSx SINE Alu -83 229 1 2560 10 7 10 chr11 112360551 112360846 -38422707 + AluYa5 SINE Alu 1 294 -17 2357 91 0 3 chr11 112361096 112361394 -38422159 - AluSg SINE Alu -13 297 1 1709 157 39 7 chr11 112361477 112361763 -38421790 - AluJb SINE Alu -17 295 1 2559 44 10 0 chr11 112361787 112362083 -38421470 - AluY SINE Alu -12 299 1 451 295 9 0 chr11 112362146 112362258 -38421295 - L2 LINE L2 -9 3304 3192 652 308 92 35 chr11 112362268 112362703 -38420850 - L1MC/D LINE L1 -1988 5820 5361 291 85 0 0 chr11 112362710 112362757 -38420796 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1941 127 4 7 chr11 112362763 112363039 -38420514 - AluSx SINE Alu -37 275 1 296 160 0 0 chr11 112363082 112363132 -38420421 + U13 snRNA snRNA 55 104 0 23 0 0 0 chr11 112363141 112363164 -38420389 + AT_rich Low_complexity Low_complexity 1 23 0 2158 115 0 10 chr11 112363169 112363482 -38420071 + AluSq SINE Alu 1 310 -3 317 365 22 7 chr11 112363766 112363903 -38419650 + LTR67 LTR ERVL 123 261 -296 393 81 306 0 chr11 112363969 112364031 -38419522 + 5S rRNA rRNA 1 81 -40 437 175 125 0 chr11 112364033 112364113 -38419440 + 5S rRNA rRNA 1 90 -31 306 54 0 0 chr11 112364152 112364189 -38419364 + U2 snRNA snRNA 1 37 -151 * 438 214 61 71 chr11 112364187 112364383 -38419170 + LTR67 LTR ERVL 347 540 -17 23 0 0 0 chr11 112364388 112364411 -38419142 + AT_rich Low_complexity Low_complexity 1 23 0 700 154 0 0 chr11 112364420 112364524 -38419029 - U13 snRNA snRNA 0 104 1 258 32 0 0 chr11 112365397 112365428 -38418125 + (TG)n Simple_repeat Simple_repeat 2 32 0 1958 129 10 3 chr11 112365468 112365763 -38417790 + AluSx SINE Alu 1 297 -15 1483 97 78 144 chr11 112365914 112366088 -38417465 - AluSx SINE Alu -14 298 153 2105 122 7 3 chr11 112366088 112366375 -38417178 - AluSx SINE Alu -24 288 1 1483 97 78 144 chr11 112366375 112366519 -38417034 - AluSx SINE Alu -159 153 1 428 304 82 16 chr11 112367640 112367824 -38415729 - MIR SINE MIR -10 252 57 1710 199 47 19 chr11 112368052 112368414 -38415139 + MLT1A2 LTR MaLR 1 372 -2 570 163 0 0 chr11 112368416 112368508 -38415045 + MLT1A2-int LTR MaLR 1 92 -1279 2123 217 40 9 chr11 112368515 112368966 -38414587 + MLT1A2-int LTR MaLR 268 732 -639 295 169 17 0 chr11 112369076 112369135 -38414418 + MLT1A2-int LTR MaLR 676 735 -1000 2244 175 22 24 chr11 112369300 112369648 -38413905 + MLT1A2-int LTR MaLR 1310 1658 -77 1667 181 34 0 chr11 112369648 112369940 -38413613 + AluJo SINE Alu 1 302 -10 2244 175 22 24 chr11 112369940 112370003 -38413550 + MLT1A2-int LTR MaLR 1658 1720 -15 539 191 63 16 chr11 112370072 112370198 -38413355 - MLT1A2 LTR MaLR -240 134 3 242 204 61 0 chr11 112370211 112370260 -38413293 - MLT1B LTR MaLR -313 52 1 1472 127 87 84 chr11 112371208 112371503 -38412050 - AluSx SINE Alu 0 301 6 2260 94 3 3 chr11 112371587 112371884 -38411669 + AluSp SINE Alu 1 297 -16 1888 116 43 56 chr11 112372074 112372376 -38411177 - AluSx SINE Alu -14 298 1 22 80 0 0 chr11 112372418 112372468 -38411085 + AT_rich Low_complexity Low_complexity 1 50 0 513 216 112 0 chr11 112372970 112373086 -38410467 + MER20 DNA MER1_type 91 219 0 1581 159 19 78 chr11 112373159 112373468 -38410085 + AluJb SINE Alu 1 291 -21 207 332 20 89 chr11 112373570 112373772 -38409781 + MIR SINE MIR 17 204 -58 1322 164 0 9 chr11 112373809 112374028 -38409525 + AluJo SINE Alu 86 302 -10 489 282 218 5 chr11 112374064 112374270 -38409283 + MIR SINE MIR 3 252 -10 2129 147 0 6 chr11 112374606 112374920 -38408633 + AluSx SINE Alu 1 312 0 37 0 0 0 chr11 112375577 112375614 -38407939 + AT_rich Low_complexity Low_complexity 1 37 0 2233 114 0 0 chr11 112375622 112375919 -38407634 + AluSx SINE Alu 1 297 -15 875 208 0 0 chr11 112375919 112376068 -38407485 + AluJb SINE Alu 134 282 -30 210 139 0 28 chr11 112376236 112376272 -38407281 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 12783 147 44 139 chr11 112376620 112378568 -38404985 - L1 LINE L1 -2946 3902 2187 920 110 22 29 chr11 112378568 112378704 -38404849 - AluJb SINE Alu -177 135 1 12783 147 44 139 chr11 112378704 112380701 -38402852 - L1 LINE L1 -4661 2187 2 1425 184 37 31 chr11 112380816 112381110 -38402443 - AluJo SINE Alu -16 296 1 677 137 0 0 chr11 112381132 112381227 -38402326 + FLAM_A SINE Alu 40 134 -8 234 174 0 0 chr11 112383183 112383229 -38400324 + (CA)n Simple_repeat Simple_repeat 2 47 0 2115 112 0 40 chr11 112383656 112383978 -38399575 - AluSx SINE Alu -3 309 1 1988 167 0 6 chr11 112383985 112384296 -38399257 - AluJb SINE Alu -3 309 1 2323 106 0 3 chr11 112384803 112385114 -38398439 - AluSx SINE Alu -2 310 1 350 237 25 34 chr11 112385229 112385347 -38398206 - L1ME3 LINE L1 -1 6161 6045 201 233 0 23 chr11 112385700 112385743 -38397810 + polypyrimidine Low_complexity Low_complexity 1 42 0 265 274 93 40 chr11 112385895 112386094 -38397459 + MIR SINE MIR 1 207 -55 813 168 8 8 chr11 112386104 112386235 -38397318 + FLAM_C SINE Alu 1 131 -2 25 51 0 0 chr11 112386305 112386344 -38397209 + AT_rich Low_complexity Low_complexity 1 39 0 2072 75 67 0 chr11 112386514 112386804 -38396749 - AluSp SINE Alu 0 308 1 326 277 109 0 chr11 112386815 112386934 -38396619 - MIR SINE MIR -56 206 75 2288 78 14 0 chr11 112387719 112388015 -38395538 + AluY SINE Alu 2 301 -10 359 330 30 0 chr11 112388111 112388211 -38395342 - L2 LINE L2 0 3272 3170 1791 139 33 23 chr11 112388212 112388513 -38395040 + AluSq SINE Alu 7 310 -3 2169 112 0 0 chr11 112388821 112389107 -38394446 + AluSg SINE Alu 1 286 -24 45 19 0 0 chr11 112389107 112389159 -38394394 + AT_rich Low_complexity Low_complexity 1 52 0 2277 89 3 3 chr11 112389840 112390131 -38393422 + AluSc SINE Alu 1 291 -18 194 232 232 18 chr11 112390538 112390594 -38392959 + L2 LINE L2 3203 3270 -2 588 257 34 87 chr11 112391201 112391354 -38392199 + MIR SINE MIR 6 166 -96 1733 111 3 95 chr11 112391354 112391669 -38391884 + AluY SINE Alu 2 287 -24 197 32 0 32 chr11 112391672 112391703 -38391850 + (TAA)n Simple_repeat Simple_repeat 2 31 0 588 257 34 87 chr11 112391703 112391810 -38391743 + MIR SINE MIR 168 256 -6 935 183 0 6 chr11 112392084 112392248 -38391305 + FAM SINE Alu 11 173 -12 2429 68 0 0 chr11 112392248 112392544 -38391009 + AluY SINE Alu 1 296 -15 182 304 116 0 chr11 112392678 112392747 -38390806 + MIR SINE MIR 31 107 -155 705 144 222 24 chr11 112392749 112392916 -38390637 + MER3 DNA MER1_type 1 200 -9 2220 117 3 0 chr11 112393212 112393510 -38390043 + AluSp SINE Alu 1 299 -14 625 261 142 4 chr11 112393510 112393770 -38389783 + L3b LINE CR1 1109 1404 -179 2147 91 11 11 chr11 112393794 112394079 -38389474 - AluSx SINE Alu -22 290 6 1887 156 3 3 chr11 112394103 112394405 -38389148 - AluJb SINE Alu -10 302 1 2264 99 3 0 chr11 112394435 112394728 -38388825 + AluSg SINE Alu 1 294 -16 2055 124 24 0 chr11 112394798 112395088 -38388465 + AluSx SINE Alu 1 297 -15 880 154 19 136 chr11 112395374 112395438 -38388115 - MER5A DNA MER1_type 0 189 119 2245 115 3 0 chr11 112395438 112395743 -38387810 + AluSp SINE Alu 2 307 -6 880 154 19 136 chr11 112395743 112395892 -38387661 - MER5A DNA MER1_type -70 119 1 2320 98 10 3 chr11 112396451 112396757 -38386796 - AluSg SINE Alu -2 308 1 275 313 71 104 chr11 112396991 112397505 -38386048 - L2 LINE L2 -16 3256 2761 2217 122 0 0 chr11 112397597 112397900 -38385653 + AluSx SINE Alu 2 304 -8 202 354 65 36 chr11 112397918 112398195 -38385358 - L2 LINE L2 -660 2654 2370 270 0 0 0 chr11 112398244 112398274 -38385279 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2036 116 3 3 chr11 112398276 112398560 -38384993 - AluSx SINE Alu -28 284 1 2521 80 0 0 chr11 112398706 112399008 -38384545 - AluSp SINE Alu -11 302 1 2312 92 0 0 chr11 112399478 112399770 -38383783 - AluSx SINE Alu -20 292 1 2000 160 0 0 chr11 112399770 112400076 -38383477 - AluSq SINE Alu -7 306 1 2021 141 30 0 chr11 112400377 112400675 -38382878 - AluSx SINE Alu -4 308 2 1491 196 18 103 chr11 112400727 112401126 -38382427 - MLT1A1 LTR MaLR 0 365 1 2090 114 0 23 chr11 112401808 112402107 -38381446 - AluSx SINE Alu -20 292 1 666 273 91 18 chr11 112402310 112402530 -38381023 - MIR SINE MIR 0 262 27 289 135 32 183 chr11 112402904 112403030 -38380523 + L1MB8 LINE L1 6072 6178 0 24 32 0 0 chr11 112403980 112404011 -38379542 + GC_rich Low_complexity Low_complexity 1 31 0 29 0 0 0 chr11 112404034 112404063 -38379490 + GC_rich Low_complexity Low_complexity 1 29 0 263 243 27 14 chr11 112404127 112404201 -38379352 + GA-rich Low_complexity Low_complexity 4 78 0 213 93 0 70 chr11 112404302 112404345 -38379208 + (CGGGGG)n Simple_repeat Simple_repeat 3 42 0 21 36 0 0 chr11 112404347 112404375 -38379178 + GC_rich Low_complexity Low_complexity 1 28 0 2265 110 0 3 chr11 112404734 112405043 -38378510 - AluSx SINE Alu -3 309 2 532 213 75 116 chr11 112405287 112405511 -38378042 - HAL1 LINE L1 -1163 1344 1112 1425 189 3 53 chr11 112405511 112405829 -38377724 - AluSx SINE Alu -10 302 1 1754 117 78 25 chr11 112405832 112406113 -38377440 - AluJb SINE Alu -16 296 1 532 213 75 116 chr11 112406113 112406156 -38377397 - HAL1 LINE L1 -1397 1110 1067 2154 133 0 13 chr11 112406156 112406472 -38377081 - AluSx SINE Alu 0 312 1 532 213 75 116 chr11 112406472 112406588 -38376965 - HAL1 LINE L1 -1440 1067 972 295 206 29 0 chr11 112406991 112407059 -38376494 - MER116 DNA Mariner -2 78 9 2874 93 0 0 chr11 112407097 112407452 -38376101 + THE1A LTR MaLR 1 355 0 11499 87 21 1 chr11 112407452 112408999 -38374554 + THE1A-int LTR MaLR 1 1578 -2 2726 87 0 6 chr11 112409001 112409358 -38374195 + THE1A LTR MaLR 1 355 0 185 233 0 17 chr11 112409697 112409757 -38373796 + CT-rich Low_complexity Low_complexity 1 59 0 2061 123 3 0 chr11 112410129 112410414 -38373139 + AluSg SINE Alu 1 286 -24 243 0 0 0 chr11 112410666 112410693 -38372860 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 1614 205 4 4 chr11 112410693 112410971 -38372582 - AluJo SINE Alu -34 278 1 216 0 0 0 chr11 112410989 112411013 -38372540 + (T)n Simple_repeat Simple_repeat 1 24 0 214 352 29 29 chr11 112411732 112411837 -38371716 + L2 LINE L2 3138 3242 -30 262 247 43 32 chr11 112411872 112411965 -38371588 - MER94 DNA DNA -30 104 11 1591 122 0 0 chr11 112412190 112412404 -38371149 + AluSg/x SINE Alu 87 300 -12 2102 99 7 0 chr11 112413145 112413457 -38370096 + AluSx SINE Alu 1 314 0 1855 145 7 10 chr11 112413575 112413865 -38369688 - AluJb SINE Alu -23 289 1 763 258 65 49 chr11 112414040 112414408 -38369145 - MLT1A2 LTR MaLR 0 374 1 41 48 0 0 chr11 112414725 112414787 -38368766 + AT_rich Low_complexity Low_complexity 1 62 0 1023 169 6 17 chr11 112415015 112415193 -38368360 - AluJ SINE Alu -6 306 131 1801 120 39 0 chr11 112415204 112415462 -38368091 - AluSq SINE Alu -23 290 23 316 98 20 0 chr11 112415477 112415528 -38368025 - AluJ SINE Alu -166 136 85 2089 231 77 12 chr11 112415564 112416083 -38367470 - MLT1H1 LTR MaLR -2 553 1 441 240 140 86 chr11 112416103 112416437 -38367116 - L1ME3A LINE L1 -232 5938 5587 333 281 41 3 chr11 112416453 112416606 -38366947 - L1M2 LINE L1 -717 5447 5291 1896 138 13 39 chr11 112416656 112416968 -38366585 - AluJb SINE Alu -8 304 1 595 257 203 2 chr11 112416986 112417410 -38366143 - L1ME3A LINE L1 -1124 5022 4514 505 306 38 2 chr11 112417462 112417667 -38365886 + MIR SINE MIR 34 250 -12 2218 107 3 10 chr11 112418197 112418505 -38365048 - AluSg SINE Alu -4 306 1 448 227 195 45 chr11 112418527 112418878 -38364675 - MLT1H1 LTR MaLR 0 549 152 2282 103 7 0 chr11 112420882 112421184 -38362369 + AluSg SINE Alu 1 304 -6 553 67 13 0 chr11 112421184 112421259 -38362294 - AluY SINE Alu -109 202 127 815 67 0 0 chr11 112421260 112421365 -38362188 + AluY SINE Alu 199 303 -8 2036 147 0 13 chr11 112421897 112422210 -38361343 + AluSx SINE Alu 1 309 -3 1966 172 13 28 chr11 112422351 112422740 -38360813 - MLT1B LTR MaLR -7 383 1 736 358 147 11 chr11 112422742 112423345 -38360208 + L2 LINE L2 2560 3246 -26 2339 110 0 0 chr11 112423633 112423941 -38359612 - AluSx SINE Alu -4 308 1 201 147 0 0 chr11 112424179 112424213 -38359340 + (A)n Simple_repeat Simple_repeat 1 34 0 2421 79 3 3 chr11 112424713 112425016 -38358537 + AluSp SINE Alu 1 303 -10 1818 158 45 3 chr11 112425020 112425312 -38358241 + AluJo SINE Alu 1 304 -8 334 327 20 7 chr11 112425314 112425467 -38358086 + L1MC4 LINE L1 5439 5593 -2215 265 197 0 0 chr11 112425519 112425580 -38357973 + FLAM SINE Alu 71 131 -2 2410 82 7 0 chr11 112425710 112426014 -38357539 + AluSp SINE Alu 1 306 -7 1589 170 65 7 chr11 112426177 112426312 -38357241 + AluJo SINE Alu 1 127 -185 1961 112 70 0 chr11 112426312 112426599 -38356954 + AluSg SINE Alu 1 307 -3 1589 170 65 7 chr11 112426599 112426740 -38356813 + AluJo SINE Alu 127 293 -19 236 218 26 0 chr11 112426769 112426847 -38356706 + L1MC4 LINE L1 6614 6693 -1349 239 309 0 0 chr11 112426940 112427024 -38356529 + L1MD1 LINE L1 5994 6077 -165 2086 130 7 0 chr11 112427030 112427356 -38356197 - AluSx SINE Alu 0 328 1 1827 171 10 0 chr11 112427366 112427664 -38355889 - AluJb SINE Alu -11 301 1 1304 155 26 63 chr11 112427665 112427968 -38355585 + L1MD2 LINE L1 6066 6357 -2 2327 138 11 0 chr11 112428126 112428487 -38355066 + MER47A DNA MER2_type 1 365 -1 477 289 23 8 chr11 112428548 112428676 -38354877 + MIR SINE MIR 30 159 -103 310 298 97 57 chr11 112428853 112429081 -38354472 + MLT1K LTR MaLR 93 329 -259 235 214 0 18 chr11 112429273 112429329 -38354224 + MIR SINE MIR 157 211 -51 2277 104 3 0 chr11 112429358 112429655 -38353898 + AluSx SINE Alu 1 298 -14 364 274 98 0 chr11 112430206 112430308 -38353245 + L2 LINE L2 3189 3300 -13 2003 141 3 0 chr11 112430310 112430600 -38352953 + AluSx SINE Alu 1 291 -21 180 369 71 27 chr11 112431040 112431265 -38352288 + L2 LINE L2 2605 2839 -475 4898 23 0 0 chr11 112431481 112432047 -38351506 - L1PA3 LINE L1 -4 6151 5586 190 285 32 89 chr11 112432229 112432352 -38351201 + L3 LINE CR1 711 826 -751 270 305 0 0 chr11 112432561 112432620 -38350933 - L2 LINE L2 -51 3262 3204 279 233 19 68 chr11 112432887 112432990 -38350563 - MIR SINE MIR -6 256 159 1123 114 6 0 chr11 112432993 112433196 -38350357 - AluY SINE Alu 0 322 119 234 0 0 0 chr11 112433196 112433222 -38350331 + (T)n Simple_repeat Simple_repeat 1 26 0 294 125 0 0 chr11 112434727 112434775 -38348778 + (T)n Simple_repeat Simple_repeat 1 48 0 21 0 0 0 chr11 112435530 112435551 -38348002 + AT_rich Low_complexity Low_complexity 1 21 0 273 308 75 9 chr11 112435660 112435767 -38347786 - MIR SINE MIR -119 143 30 38 0 0 0 chr11 112436271 112436309 -38347244 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr11 112436810 112436840 -38346713 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr11 112437122 112437143 -38346410 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr11 112437910 112437937 -38345616 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1778 170 52 12 chr11 112438432 112438762 -38344791 - MER2 DNA MER2_type 0 344 2 363 282 16 80 chr11 112438901 112439089 -38344464 + L3 LINE CR1 1126 1301 -276 820 128 0 0 chr11 112440779 112440904 -38342649 - AluSg/x SINE Alu 0 312 188 1286 134 5 0 chr11 112440904 112441090 -38342463 + AluSg/x SINE Alu 106 292 -18 955 192 24 96 chr11 112443376 112443482 -38340071 + Tigger7 DNA MER2_type 1 113 -620 1764 158 22 35 chr11 112443482 112443793 -38339760 + AluJo SINE Alu 1 307 -5 955 192 24 96 chr11 112443793 112443978 -38339575 + Tigger7 DNA MER2_type 113 271 -462 460 141 0 12 chr11 112443992 112444077 -38339476 + Tigger7 DNA MER2_type 2404 2487 0 1447 166 8 8 chr11 112444115 112444368 -38339185 - AluJb SINE Alu -3 309 57 1891 144 6 22 chr11 112444464 112444776 -38338777 + AluSx SINE Alu 1 307 -5 25 31 0 0 chr11 112444848 112444880 -38338673 + AT_rich Low_complexity Low_complexity 1 32 0 999 101 7 14 chr11 112444939 112445087 -38338466 + AluSq/x SINE Alu 1 147 -166 2264 109 0 0 chr11 112446948 112447241 -38336312 + AluSg SINE Alu 1 293 -17 216 360 54 27 chr11 112447476 112447587 -38335966 + L2 LINE L2 3004 3117 -155 321 242 0 40 chr11 112448273 112448372 -38335181 + MIR3 SINE MIR 113 207 -1 202 229 52 94 chr11 112450398 112450494 -38333059 + L3 LINE CR1 1480 1571 -6 321 145 0 0 chr11 112451241 112451303 -38332250 + (CA)n Simple_repeat Simple_repeat 2 63 0 207 194 0 0 chr11 112451307 112451343 -38332210 + CT-rich Low_complexity Low_complexity 1 36 0 740 169 0 0 chr11 112452590 112452708 -38330845 - FLAM_C SINE Alu -25 118 1 330 195 37 0 chr11 112453036 112453118 -38330435 + HsTC2 DNA Tc2 3 87 -1811 675 296 150 0 chr11 112453348 112453574 -38329979 - MIR SINE MIR 0 262 3 184 337 33 11 chr11 112453574 112453663 -38329890 - MIR SINE MIR -10 252 162 224 229 86 0 chr11 112453905 112453975 -38329578 - MIR SINE MIR -96 166 91 2288 95 10 0 chr11 112456363 112456668 -38326885 - AluSx SINE Alu -4 308 1 208 333 52 44 chr11 112456930 112457065 -38326488 + L2 LINE L2 3133 3268 -4 1911 120 6 89 chr11 112457187 112457511 -38326042 - AluSg SINE Alu -13 297 1 361 154 0 90 chr11 112457541 112457619 -38325934 + MER20 DNA MER1_type 2 72 -147 309 297 158 0 chr11 112457978 112458079 -38325474 + L2 LINE L2 3141 3257 -15 276 346 66 29 chr11 112458159 112458295 -38325258 + MIR3 SINE MIR 17 157 -51 225 286 91 0 chr11 112458921 112458998 -38324555 + MIR3 SINE MIR 121 204 -4 222 261 0 0 chr11 112460853 112460899 -38322654 + (TA)n Simple_repeat Simple_repeat 1 46 0 256 254 0 32 chr11 112462765 112462828 -38320725 - MER5A DNA MER1_type -127 62 2 410 203 236 20 chr11 112464813 112464961 -38318592 - MER5A DNA MER1_type 0 189 10 315 238 100 54 chr11 112465993 112466195 -38317358 - MIR SINE MIR -13 249 38 2293 98 3 0 chr11 112466401 112466706 -38316847 - AluSp SINE Alu -7 306 1 258 32 0 0 chr11 112467769 112467800 -38315753 + (TA)n Simple_repeat Simple_repeat 2 32 0 2229 104 0 13 chr11 112467802 112468118 -38315435 - AluSx SINE Alu 0 312 1 299 345 154 28 chr11 112468436 112468844 -38314709 - L2 LINE L2 -274 2998 2543 2079 122 0 0 chr11 112469183 112469469 -38314084 + AluSx SINE Alu 1 286 -26 23 0 0 0 chr11 112469469 112469492 -38314061 + AT_rich Low_complexity Low_complexity 1 23 0 4726 193 53 29 chr11 112469494 112471174 -38312379 - L1MD1 LINE L1 -5 6631 4922 4516 222 110 18 chr11 112471176 112472321 -38311232 - L1MD1 LINE L1 -5178 1362 112 1268 142 15 0 chr11 112472342 112472547 -38311006 + MER2 DNA MER2_type 2 209 -136 2659 84 169 2 chr11 112472568 112472971 -38310582 - LTR12 LTR ERV1 -244 470 1 452 224 0 0 chr11 112472986 112473062 -38310491 + MER2 DNA MER2_type 270 345 0 514 131 12 12 chr11 112473062 112473146 -38310407 - L1MD1 LINE L1 -6436 104 21 21 0 0 0 chr11 112473757 112473778 -38309775 + AT_rich Low_complexity Low_complexity 1 21 0 212 296 22 118 chr11 112474247 112474382 -38309171 + L2 LINE L2 3150 3271 -1 374 351 113 27 chr11 112474744 112475072 -38308481 + L2 LINE L2 2898 3253 -60 331 370 48 14 chr11 112475152 112475298 -38308255 - L2 LINE L2 -3 3269 3119 193 247 75 43 chr11 112475298 112475391 -38308162 - L2 LINE L2 0 3272 3177 774 259 102 25 chr11 112475552 112475788 -38307765 + MIR SINE MIR 9 262 0 1386 272 110 19 chr11 112476212 112476741 -38306812 + L2 LINE L2 461 1037 -2277 4061 227 106 50 chr11 112476741 112477380 -38306173 - L1ME2 LINE L1 -120 6044 5442 186 71 0 0 chr11 112477380 112477408 -38306145 + (TA)n Simple_repeat Simple_repeat 2 29 0 4061 227 106 50 chr11 112477408 112477886 -38305667 - L1ME2 LINE L1 -722 5442 4992 690 206 39 103 chr11 112477886 112478119 -38305434 - MER20 DNA MER1_type 0 219 2 4061 227 106 50 chr11 112478119 112479098 -38304455 - L1ME2 LINE L1 -1172 4992 3746 3508 120 0 9 chr11 112479098 112479624 -38303929 - Tigger4(Zombi) DNA MER2_type 0 2731 2211 473 163 12 12 chr11 112479611 112479697 -38303856 - Tigger4(Zombi) DNA MER2_type -2645 86 1 * 2795 206 58 134 chr11 112479697 112480035 -38303518 - L1ME2 LINE L1 -2399 3747 3385 2794 19 0 0 chr11 112480035 112480349 -38303204 + AluYb8 SINE Alu 1 314 -4 2795 206 58 134 chr11 112480349 112480729 -38302824 - L1ME2 LINE L1 -2761 3385 2978 697 164 8 23 chr11 112480729 112480857 -38302696 + FLAM_C SINE Alu 1 126 -17 2795 206 58 134 chr11 112480857 112481539 -38302014 - L1ME2 LINE L1 -3168 2978 2336 492 143 0 0 chr11 112481699 112481769 -38301784 - LTR40a LTR ERVL -1 518 449 694 223 137 103 chr11 112482627 112483103 -38300450 - MLT1H1 LTR MaLR 0 555 64 4611 192 45 16 chr11 112483359 112485332 -38298221 - L1MB3 LINE L1 -75 6108 4079 412 230 10 10 chr11 112485866 112485966 -38297587 - Charlie8 DNA MER1_type -2224 193 94 29 84 0 0 chr11 112486288 112486359 -38297194 + AT_rich Low_complexity Low_complexity 1 71 0 323 363 60 60 chr11 112487137 112487608 -38295945 - L2 LINE L2 -1 3271 2770 602 248 58 67 chr11 112487711 112488118 -38295435 - MLT1J LTR MaLR -45 466 1 1774 175 0 7 chr11 112488390 112488693 -38294860 + AluJb SINE Alu 1 301 -11 2012 111 17 7 chr11 112488745 112489033 -38294520 + AluSx SINE Alu 1 291 -21 28 48 0 0 chr11 112489087 112489129 -38294424 + AT_rich Low_complexity Low_complexity 1 42 0 392 334 93 53 chr11 112489321 112489698 -38293855 - L2 LINE L2 -2761 553 162 * 527 235 181 7 chr11 112489688 112489837 -38293716 + MIR SINE MIR 82 256 -6 21 71 0 0 chr11 112490074 112490116 -38293437 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr11 112491011 112491041 -38292512 + AT_rich Low_complexity Low_complexity 1 30 0 359 373 40 0 chr11 112491181 112491331 -38292222 - L2 LINE L2 -219 3053 2898 1031 235 154 10 chr11 112491864 112492291 -38291262 - LTR33 LTR ERVL -2 519 1 380 316 134 5 chr11 112492303 112492490 -38291063 - L2 LINE L2 -1387 1927 1717 463 305 52 33 chr11 112492943 112493215 -38290338 - L2 LINE L2 -464 2850 2574 1634 198 3 28 chr11 112493388 112493793 -38289760 + AluJo SINE Alu 1 397 0 184 356 99 0 chr11 112493945 112494046 -38289507 - L2 LINE L2 -992 2322 2212 258 360 75 27 chr11 112494050 112494197 -38289356 + L2 LINE L2 3119 3272 0 307 317 225 51 chr11 112494286 112494763 -38288790 - L2 LINE L2 -339 2975 2350 348 65 0 0 chr11 112494763 112494809 -38288744 + L1MB1 LINE L1 6123 6168 0 307 317 225 51 chr11 112494809 112494993 -38288560 - L2 LINE L2 -964 2350 2199 253 332 79 25 chr11 112495621 112495823 -38287730 - L2 LINE L2 -1124 2190 1978 2168 94 7 0 chr11 112496178 112496490 -38287063 - AluSc SINE Alu 0 309 3 237 212 15 15 chr11 112496774 112496840 -38286713 + (TA)n Simple_repeat Simple_repeat 2 67 0 459 347 0 16 chr11 112498681 112498991 -38284562 + CT-rich Low_complexity Low_complexity 1 304 0 206 140 0 40 chr11 112499035 112499085 -38284468 + (GAGAA)n Simple_repeat Simple_repeat 5 52 0 1388 243 80 53 chr11 112501272 112501312 -38282241 + L1ME LINE L1 524 561 -5700 2316 91 7 0 chr11 112501312 112501619 -38281934 - AluSc SINE Alu 0 309 1 1388 243 80 53 chr11 112501619 112502327 -38281226 + L1ME LINE L1 561 1368 -4893 25 65 0 0 chr11 112502819 112502865 -38280688 + AT_rich Low_complexity Low_complexity 1 46 0 437 335 108 6 chr11 112503256 112503414 -38280139 + MER5B DNA MER1_type 1 174 -4 24 32 0 0 chr11 112503531 112503562 -38279991 + AT_rich Low_complexity Low_complexity 1 31 0 2019 135 14 0 chr11 112506190 112506486 -38277067 + AluSx SINE Alu 1 300 -12 1838 120 13 33 chr11 112506517 112506816 -38276737 + AluSx SINE Alu 1 293 -19 352 284 47 31 chr11 112507492 112507619 -38275934 + L2 LINE L2 3140 3268 -4 438 313 129 9 chr11 112507828 112508045 -38275508 - MIR SINE MIR 0 262 20 258 322 164 62 chr11 112508690 112508936 -38274617 + L2 LINE L2 584 803 -2511 719 127 25 0 chr11 112508936 112509054 -38274499 - L1PA16 LINE L1 0 6166 6046 258 322 164 62 chr11 112509054 112509184 -38274369 + L2 LINE L2 803 918 -2396 1785 168 44 0 chr11 112509184 112509482 -38274071 - AluJo SINE Alu -1 311 1 258 322 164 62 chr11 112509482 112509852 -38273701 + L2 LINE L2 918 1408 -1906 25 65 0 0 chr11 112509892 112509938 -38273615 + AT_rich Low_complexity Low_complexity 1 46 0 24 32 0 0 chr11 112510183 112510214 -38273339 + AT_rich Low_complexity Low_complexity 1 31 0 1780 171 0 0 chr11 112511178 112511487 -38272066 - AluJb SINE Alu 0 309 1 1615 260 100 18 chr11 112511624 112512367 -38271186 + L1ME3A LINE L1 4477 5280 -866 419 263 207 28 chr11 112512358 112512715 -38270838 + L1ME3A LINE L1 5734 6154 -16 * 199 321 12 12 chr11 112512810 112512891 -38270662 - MIR3 SINE MIR -3 205 125 712 265 82 9 chr11 112512912 112513131 -38270422 - MIR SINE MIR -21 241 7 1639 159 29 26 chr11 112513132 112513440 -38270113 - AluJb SINE Alu -3 309 1 375 353 10 35 chr11 112513469 112513670 -38269883 + L3 LINE CR1 641 836 -741 552 219 23 0 chr11 112513727 112513855 -38269698 - FLAM_C SINE Alu -1 132 2 2136 129 3 0 chr11 112513993 112514304 -38269249 + AluSx SINE Alu 1 312 0 2373 59 3 0 chr11 112514313 112514600 -38268953 + AluY SINE Alu 2 289 -22 2227 107 0 0 chr11 112514687 112514978 -38268575 + AluSg SINE Alu 1 291 -19 484 264 247 19 chr11 112515049 112515466 -38268087 - L1ME3 LINE L1 -215 5947 5436 2744 82 30 0 chr11 112515466 112515833 -38267720 + L1PA10 LINE L1 5776 6153 -15 302 253 128 6 chr11 112515945 112516177 -38267376 - L1ME3 LINE L1 -747 5399 5189 21 0 0 0 chr11 112516428 112516449 -38267104 + AT_rich Low_complexity Low_complexity 1 21 0 456 253 229 6 chr11 112516530 112516700 -38266853 + L3 LINE CR1 1232 1439 -138 453 270 117 59 chr11 112517366 112517588 -38265965 - MER112 DNA MER1_type -6 254 20 526 235 7 52 chr11 112517604 112517740 -38265813 + MIR SINE MIR 7 136 -126 5294 113 14 4 chr11 112517745 112518518 -38265035 - L1PA15 LINE L1 -2 6163 5383 220 250 0 14 chr11 112518518 112518620 -38264933 + MIR SINE MIR 119 262 0 298 240 114 35 chr11 112519253 112519494 -38264059 - Charlie7 DNA MER1_type -1926 686 396 2434 84 0 3 chr11 112519517 112519827 -38263726 + AluSc SINE Alu 1 309 0 978 259 68 14 chr11 112519909 112520264 -38263289 - Charlie7 DNA MER1_type -2211 401 28 232 364 118 0 chr11 112520292 112520402 -38263151 + L2 LINE L2 3150 3272 0 2347 86 0 10 chr11 112521013 112521315 -38262238 + AluSq SINE Alu 1 299 -14 1679 121 59 22 chr11 112521632 112521904 -38261649 + AluJo SINE Alu 1 282 -30 34 0 0 0 chr11 112521911 112521945 -38261608 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr11 112522481 112522512 -38261041 + AT_rich Low_complexity Low_complexity 1 31 0 2119 128 0 0 chr11 112523464 112523754 -38259799 - AluY SINE Alu -16 295 6 324 318 0 0 chr11 112524263 112524389 -38259164 - L1ME LINE L1 -370 5751 5626 269 286 0 0 chr11 112524454 112524524 -38259029 - L1ME LINE L1 -493 5628 5559 236 313 53 87 chr11 112524861 112524926 -38258627 - L2 LINE L2 0 3313 3247 16533 127 35 7 chr11 112524926 112527449 -38256104 + Tigger4(Zombi) DNA MER2_type 1 2604 -127 2183 133 3 0 chr11 112527449 112527749 -38255804 - AluSx SINE Alu -11 301 1 16533 127 35 7 chr11 112527749 112527878 -38255675 + Tigger4(Zombi) DNA MER2_type 2604 2728 -3 236 313 53 87 chr11 112527878 112527962 -38255591 - L2 LINE L2 -66 3247 3169 2045 133 44 0 chr11 112528155 112528449 -38255104 - AluSq SINE Alu -6 307 1 25 75 0 0 chr11 112529260 112529313 -38254240 + AT_rich Low_complexity Low_complexity 1 53 0 808 271 99 106 chr11 112529443 112530738 -38252815 + L1MEd LINE L1 414 1587 -4851 268 226 98 53 chr11 112530801 112530934 -38252619 + L1MEd LINE L1 1838 1976 -4564 237 65 0 0 chr11 112530934 112530965 -38252588 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 21 0 0 0 chr11 112531052 112531073 -38252480 + AT_rich Low_complexity Low_complexity 1 21 0 410 294 105 8 chr11 112531182 112531430 -38252123 + L1MEd LINE L1 3076 3347 -3193 1048 188 48 5 chr11 112531444 112531652 -38251901 - MER20 DNA MER1_type 0 219 3 2947 247 80 76 chr11 112531687 112531845 -38251708 + L1MCc LINE L1 19 175 -6427 2417 60 0 3 chr11 112531845 112532143 -38251410 + AluY SINE Alu 1 297 -14 2947 247 80 76 chr11 112532143 112533092 -38250461 + L1MCc LINE L1 175 1162 -5440 1558 146 4 20 chr11 112533092 112533368 -38250185 + AluJb SINE Alu 35 306 0 2947 247 80 76 chr11 112533368 112533923 -38249630 + L1MCc LINE L1 1162 1713 -4889 436 252 14 7 chr11 112533910 112534053 -38249500 + L1ME3A LINE L1 5808 5951 -219 * 32 26 0 0 chr11 112534297 112534336 -38249217 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr11 112534629 112534655 -38248898 + AT_rich Low_complexity Low_complexity 1 26 0 6204 92 13 51 chr11 112535226 112536119 -38247434 - L1PA15 LINE L1 -6 6159 5296 2200 104 0 3 chr11 112536119 112536408 -38247145 + AluSq SINE Alu 1 288 -25 6204 92 13 51 chr11 112536408 112536871 -38246682 - L1PA15 LINE L1 -869 5296 4817 1994 48 12 0 chr11 112537044 112537293 -38246260 - L1PA7 LINE L1 0 6154 5903 216 287 277 11 chr11 112537366 112537460 -38246093 - MER5A DNA MER1_type 0 189 71 543 216 177 6 chr11 112537524 112537671 -38245882 - MER5B DNA MER1_type -11 178 1 259 277 133 0 chr11 112537671 112537721 -38245832 - L2 LINE L2 -2810 504 444 230 296 57 23 chr11 112538023 112538111 -38245442 - L2 LINE L2 -1 3312 3222 1373 212 98 59 chr11 112538135 112538541 -38245012 + MLT2E LTR ERVL 74 495 -133 555 212 36 15 chr11 112538594 112538731 -38244822 + MLT2E LTR ERVL 487 626 -2 2302 102 0 0 chr11 112539200 112539503 -38244050 - AluSg SINE Alu -7 303 1 1718 121 39 62 chr11 112540471 112540778 -38242775 + AluJo SINE Alu 1 300 -12 427 291 210 17 chr11 112540901 112541114 -38242439 - MIR SINE MIR -7 255 1 901 150 8 0 chr11 112541932 112542065 -38241488 + AluJo SINE Alu 1 134 -178 2141 111 13 7 chr11 112542068 112542375 -38241178 + AluSc SINE Alu 1 309 0 1749 175 0 29 chr11 112542568 112542876 -38240677 + AluJb SINE Alu 1 299 -13 21 0 0 0 chr11 112543257 112543278 -38240275 + AT_rich Low_complexity Low_complexity 1 21 0 934 221 64 4 chr11 112543289 112543538 -38240015 - L1MC4a LINE L1 -1290 6518 6255 1218 191 0 99 chr11 112543541 112543855 -38239698 - AluJo SINE Alu -13 299 17 696 199 180 27 chr11 112543874 112544130 -38239423 - L1MC3 LINE L1 -1560 6225 5931 * 3424 202 140 84 chr11 112544126 112544180 -38239373 + L1MC4a LINE L1 6527 6577 -1231 5019 118 60 0 chr11 112544180 112544926 -38238627 - MER54B LTR ERVL 0 793 3 3424 202 140 84 chr11 112544926 112544938 -38238615 + L1MC4a LINE L1 6577 6587 -1221 1769 176 3 3 chr11 112544938 112545228 -38238325 + AluJo SINE Alu 1 290 -22 3424 202 140 84 chr11 112545228 112545338 -38238215 + L1MC4a LINE L1 6587 6689 -1119 318 106 0 0 chr11 112545338 112545385 -38238168 + (TA)n Simple_repeat Simple_repeat 1 47 0 3424 202 140 84 chr11 112545385 112545562 -38237991 + L1MC4a LINE L1 6689 6855 -953 2183 88 0 7 chr11 112545562 112545891 -38237662 + AluSp SINE Alu 1 327 0 3424 202 140 84 chr11 112545891 112545918 -38237635 + L1MC4a LINE L1 6855 6879 -929 234 109 26 26 chr11 112545918 112545994 -38237559 + AluSp/q SINE Alu 249 315 0 3424 202 140 84 chr11 112545994 112546923 -38236630 + L1MC4a LINE L1 6879 7808 0 402 21 0 0 chr11 112547060 112547107 -38236446 + (TA)n Simple_repeat Simple_repeat 2 48 0 2580 133 26 9 chr11 112547334 112547755 -38235798 - MSTA LTR MaLR 0 428 1 717 325 37 4 chr11 112548023 112548266 -38235287 - MIR SINE MIR 0 262 12 2173 116 0 0 chr11 112548281 112548573 -38234980 - AluSx SINE Alu -20 292 1 2167 117 3 0 chr11 112548835 112549135 -38234418 - AluSq SINE Alu -12 301 1 439 345 161 38 chr11 112549547 112549964 -38233589 - L2 LINE L2 0 3272 2805 287 224 93 9 chr11 112550283 112550390 -38233163 + MER112 DNA MER1_type 133 248 -12 634 273 98 22 chr11 112550741 112551107 -38232446 + L1ME4a LINE L1 5710 6103 -18 562 90 0 45 chr11 112551467 112551556 -38231997 - FLAM_C SINE Alu -8 135 51 25 0 0 0 chr11 112551642 112551667 -38231886 + AT_rich Low_complexity Low_complexity 1 25 0 501 322 69 42 chr11 112552135 112552467 -38231086 - L2 LINE L2 -4 3268 2928 2177 104 0 7 chr11 112552602 112552901 -38230652 + AluSx SINE Alu 1 297 -15 869 251 37 7 chr11 112552957 112553228 -38230325 + HAL1 LINE L1 108 386 -2121 511 277 34 29 chr11 112553347 112553585 -38229968 + LTR16A LTR ERVL 12 250 -200 754 260 73 22 chr11 112553636 112553988 -38229565 + L1M4 LINE L1 4373 4750 -1396 2076 151 0 0 chr11 112553988 112554293 -38229260 - AluSx SINE Alu -6 306 2 754 260 73 22 chr11 112554293 112554351 -38229202 + L1M4 LINE L1 4750 4804 -1342 24 53 0 0 chr11 112554358 112554396 -38229157 + AT_rich Low_complexity Low_complexity 1 38 0 607 243 135 90 chr11 112554453 112554897 -38228656 + LTR16B LTR ERVL 1 464 0 434 320 101 18 chr11 112554897 112555175 -38228378 + HERV16 LTR ERVL 1 301 -4695 974 303 35 44 chr11 112555704 112556118 -38227435 + HERV16 LTR ERVL 1278 1694 -3302 2188 110 0 3 chr11 112556118 112556410 -38227143 - AluSx SINE Alu -21 291 1 2506 40 0 10 chr11 112556418 112556720 -38226833 - AluY SINE Alu -12 299 1 974 303 35 44 chr11 112556720 112556916 -38226637 + HERV16 LTR ERVL 1701 1954 -3042 281 266 13 0 chr11 112556933 112557012 -38226541 + HAL1 LINE L1 1691 1770 -737 285 319 21 0 chr11 112557014 112557108 -38226445 + LTR16B LTR ERVL 1 96 -368 874 225 147 16 chr11 112557165 112557539 -38226014 + HAL1 LINE L1 1794 2216 -291 487 186 196 39 chr11 112557558 112557762 -38225791 + HAL1 LINE L1 2265 2500 -7 696 169 7 40 chr11 112557794 112557942 -38225611 - FLAM_C SINE Alu 0 143 1 180 271 0 0 chr11 112558135 112558148 -38225405 + A-rich Low_complexity Low_complexity 1 13 -105 2739 163 43 22 chr11 112558148 112558682 -38224871 + L1MB7 LINE L1 5632 6176 -8 180 271 0 0 chr11 112558682 112558786 -38224767 + A-rich Low_complexity Low_complexity 12 118 0 1953 164 0 0 chr11 112559784 112560071 -38223482 - AluJb SINE Alu -25 287 1 657 249 27 82 chr11 112560372 112560509 -38223044 - MIR SINE MIR 0 262 144 2057 116 43 7 chr11 112560509 112560810 -38222743 + AluSx SINE Alu 1 312 0 657 249 27 82 chr11 112560810 112560929 -38222624 - MIR SINE MIR -118 144 20 501 333 169 8 chr11 112561368 112561617 -38221936 + L3 LINE CR1 399 687 -890 2042 153 7 0 chr11 112561966 112562274 -38221279 + AluSx SINE Alu 1 310 -2 2387 63 0 25 chr11 112562276 112562591 -38220962 + AluY SINE Alu 1 307 -4 1702 180 68 68 chr11 112563125 112563227 -38220326 + MSTD LTR MaLR 1 102 -294 1877 158 0 7 chr11 112563227 112563530 -38220023 + AluSx SINE Alu 1 301 -11 1702 180 68 68 chr11 112563530 112563821 -38219732 + MSTD LTR MaLR 101 394 -2 2148 92 0 31 chr11 112563972 112564297 -38219256 - AluSx SINE Alu 0 316 1 795 188 0 0 chr11 112564345 112564462 -38219091 + FLAM_C SINE Alu 2 118 -25 409 288 79 57 chr11 112564488 112564674 -38218879 - L2 LINE L2 -874 2440 2247 1641 170 16 39 chr11 112564674 112564980 -38218573 - AluJo SINE Alu -13 299 1 409 288 79 57 chr11 112564980 112565022 -38218531 - L2 LINE L2 -1067 2247 2207 184 200 0 0 chr11 112565094 112565134 -38218419 - L2 LINE L2 -1598 1716 1677 2117 102 14 3 chr11 112565487 112565772 -38217781 + AluSx SINE Alu 1 288 -24 2190 94 0 21 chr11 112565799 112566116 -38217437 - AluSx SINE Alu 0 311 1 502 292 89 26 chr11 112566207 112566594 -38216959 - LTR16A LTR ERVL 0 491 6 185 284 125 11 chr11 112566831 112566919 -38216634 - L2 LINE L2 -9 3304 3207 2299 102 3 3 chr11 112567108 112567412 -38216141 + AluSx SINE Alu 1 304 -8 300 296 9 28 chr11 112567441 112567549 -38216004 - L2 LINE L2 -17 3296 3191 181 400 26 9 chr11 112567555 112567670 -38215883 - L2 LINE L2 -420 2894 2778 401 212 47 0 chr11 112567836 112567921 -38215632 - MIR SINE MIR 0 262 174 217 221 88 44 chr11 112569546 112569614 -38213939 - MIR SINE MIR -127 135 65 215 221 32 11 chr11 112569700 112569795 -38213758 + (TTTAA)n Simple_repeat Simple_repeat 1 97 0 586 310 121 29 chr11 112569964 112570409 -38213144 - L2 LINE L2 0 3313 2828 1388 200 97 35 chr11 112570489 112570859 -38212694 + LTR1B LTR ERV1 1 393 -433 1099 218 66 89 chr11 112570961 112571401 -38212152 + LTR1B LTR ERV1 397 826 0 671 276 22 87 chr11 112571414 112571736 -38211817 - L2 LINE L2 -597 2717 2417 2049 114 0 20 chr11 112571764 112572061 -38211492 + AluY SINE Alu 1 291 -20 546 244 138 6 chr11 112572104 112572264 -38211289 - MER5A DNA MER1_type 0 189 9 1874 166 3 3 chr11 112572331 112572620 -38210933 - AluJo SINE Alu -23 289 1 40 49 0 0 chr11 112572630 112572691 -38210862 + AT_rich Low_complexity Low_complexity 1 61 0 2138 113 0 3 chr11 112572913 112573217 -38210336 - AluSg SINE Alu 0 303 1 29690 56 7 2 chr11 112573587 112578133 -38205420 - L1PA6 LINE L1 -6 6148 1578 2047 145 14 0 chr11 112578133 112578422 -38205131 - AluSx SINE Alu -19 293 1 360 184 4 42 chr11 112578538 112578633 -38204920 + L1MA9 LINE L1 6071 6311 -1 1856 167 3 7 chr11 112578694 112579000 -38204553 + AluJb SINE Alu 1 305 -7 2242 54 0 7 chr11 112579159 112579437 -38204116 - AluY SINE Alu 0 311 36 378 0 0 0 chr11 112579456 112579498 -38204055 + (CA)n Simple_repeat Simple_repeat 2 43 0 434 284 122 0 chr11 112579519 112579741 -38203812 - L1ME4a LINE L1 -215 5906 5658 230 149 43 0 chr11 112581063 112581110 -38202443 + T-rich Low_complexity Low_complexity 2 50 0 203 250 149 54 chr11 112581302 112581450 -38202103 + MIR SINE MIR 91 252 -10 465 263 39 88 chr11 112581511 112581716 -38201837 - MER91A DNA MER1_type 0 196 2 2238 104 10 0 chr11 112582148 112582446 -38201107 - AluSg SINE Alu -9 301 1 21 82 0 0 chr11 112582448 112582497 -38201056 + AT_rich Low_complexity Low_complexity 1 49 0 2262 99 7 3 chr11 112582833 112583136 -38200417 - AluSp SINE Alu -9 304 1 1573 203 7 10 chr11 112583190 112583490 -38200063 + AluJb SINE Alu 1 299 -13 222 171 171 0 chr11 112583588 112583658 -38199895 - L2 LINE L2 -1416 1898 1817 23 68 0 0 chr11 112583759 112583803 -38199750 + AT_rich Low_complexity Low_complexity 1 44 0 182 137 0 137 chr11 112585044 112585095 -38198458 + L3b LINE CR1 1532 1575 -8 21 71 0 0 chr11 112585471 112585513 -38198040 + AT_rich Low_complexity Low_complexity 1 42 0 2173 114 0 3 chr11 112585566 112585855 -38197698 + AluSc SINE Alu 1 288 -21 1766 165 0 20 chr11 112585869 112586166 -38197387 + AluJo SINE Alu 1 291 -21 24 32 0 0 chr11 112586167 112586198 -38197355 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr11 112586339 112586361 -38197192 + AT_rich Low_complexity Low_complexity 1 22 0 499 248 126 35 chr11 112587134 112587332 -38196221 + MIR SINE MIR 1 216 -46 2323 109 7 0 chr11 112588800 112589104 -38194449 + AluSx SINE Alu 1 306 -6 2173 124 0 10 chr11 112590020 112590326 -38193227 + AluSq SINE Alu 1 303 -10 234 0 0 0 chr11 112590413 112590439 -38193114 + (T)n Simple_repeat Simple_repeat 1 26 0 42 0 0 0 chr11 112590444 112590486 -38193067 + GC_rich Low_complexity Low_complexity 1 42 0 2367 147 61 24 chr11 112592004 112592413 -38191140 - MSTB LTR MaLR -2 424 1 456 261 210 67 chr11 112592790 112593119 -38190434 + L2 LINE L2 2933 3308 -5 894 138 0 138 chr11 112593261 112593572 -38189981 - AluSg SINE Alu -1 309 42 2499 69 0 7 chr11 112593700 112594006 -38189547 + AluY SINE Alu 1 304 -7 1973 143 3 3 chr11 112594165 112594459 -38189094 + AluJo SINE Alu 1 294 -18 2397 49 0 3 chr11 112594464 112594771 -38188782 + AluY SINE Alu 1 306 0 29 0 0 0 chr11 112594894 112594923 -38188630 + AT_rich Low_complexity Low_complexity 1 29 0 2299 92 7 3 chr11 112595113 112595419 -38188134 - AluSg SINE Alu -3 307 1 565 201 222 28 chr11 112595422 112595566 -38187987 + MER5A DNA MER1_type 2 173 -16 321 375 168 3 chr11 112596276 112596567 -38186986 - L2 LINE L2 0 3272 2934 333 0 0 0 chr11 112597002 112597039 -38186514 + (TG)n Simple_repeat Simple_repeat 2 38 0 2766 10 0 3 chr11 112597094 112597398 -38186155 + AluYa5 SINE Alu 1 303 -8 730 283 28 40 chr11 112598109 112598360 -38185193 + MIR SINE MIR 8 255 -7 297 0 0 0 chr11 112600114 112600147 -38183406 + (TG)n Simple_repeat Simple_repeat 2 34 0 1973 181 36 0 chr11 112601785 112602117 -38181436 + MER7A DNA MER2_type 4 345 -1 188 80 0 0 chr11 112602856 112602881 -38180672 - MIR SINE MIR -28 234 210 671 289 66 40 chr11 112602895 112603196 -38180357 - L2 LINE L2 -157 3156 2848 245 227 101 4 chr11 112603220 112603339 -38180214 - L2 LINE L2 -573 2741 2559 522 270 143 30 chr11 112603752 112603982 -38179571 - MIR SINE MIR -6 256 1 480 248 121 13 chr11 112604165 112604322 -38179231 - MER5A DNA MER1_type -1 188 15 1859 65 97 50 chr11 112604528 112604807 -38178746 + AluSc SINE Alu 1 292 -17 2126 75 0 0 chr11 112605366 112605620 -38177933 + AluSx SINE Alu 38 291 -21 1708 152 0 0 chr11 112605730 112605987 -38177566 - Tigger3(Golem) DNA MER2_type -2 3027 2771 792 188 0 36 chr11 112605984 112606122 -38177431 - Tigger3(Golem) DNA MER2_type -2887 142 10 * 2389 92 3 3 chr11 112606677 112606983 -38176570 + AluSg SINE Alu 1 306 -4 1748 103 8 0 chr11 112607668 112607902 -38175651 + AluSc SINE Alu 64 299 -10 895 203 60 56 chr11 112608140 112608372 -38175181 + MIR SINE MIR 5 237 -25 2335 115 0 0 chr11 112609161 112609473 -38174080 + AluSx SINE Alu 1 312 0 1077 171 0 0 chr11 112609473 112609648 -38173905 + AluSg/x SINE Alu 131 305 -7 295 155 103 0 chr11 112609674 112609732 -38173821 - MIR SINE MIR -16 246 183 660 264 0 39 chr11 112609785 112609967 -38173586 - MER5B DNA MER1_type -1 177 3 246 259 0 0 chr11 112610827 112610881 -38172672 + L1ME LINE L1 5630 5683 -438 2048 111 31 7 chr11 112611004 112611293 -38172260 + AluSq SINE Alu 3 298 -15 1983 141 7 0 chr11 112611312 112611603 -38171950 + AluSx SINE Alu 1 293 -19 878 143 48 42 chr11 112611766 112611934 -38171619 - AluSg/x SINE Alu -23 289 121 1763 168 9 25 chr11 112612213 112612529 -38171024 - AluJo SINE Alu -1 311 1 2177 135 3 3 chr11 112612926 112613237 -38170316 + AluSx SINE Alu 1 311 -1 2250 104 3 0 chr11 112613244 112613542 -38170011 + AluSg SINE Alu 1 299 -11 535 212 98 15 chr11 112614060 112614192 -38169361 + MLT1I LTR MaLR 28 170 -239 2296 96 0 6 chr11 112614386 112614698 -38168855 - AluY SINE Alu -1 310 1 218 255 37 133 chr11 112614698 112614783 -38168770 - L2 LINE L2 -247 3025 2966 2109 137 0 10 chr11 112614783 112615090 -38168463 + AluJb SINE Alu 1 304 -8 218 255 37 133 chr11 112615090 112615192 -38168361 - L2 LINE L2 -306 2966 2856 * 414 305 164 20 chr11 112615187 112615492 -38168061 - L2 LINE L2 -614 2700 2352 803 308 112 20 chr11 112615503 112615917 -38167636 + L2 LINE L2 2693 3179 -134 2011 117 13 17 chr11 112615917 112616215 -38167338 + AluSc SINE Alu 1 297 -12 803 308 112 20 chr11 112616215 112616320 -38167233 + L2 LINE L2 3179 3273 -40 613 285 99 0 chr11 112616326 112616579 -38166974 - L2 LINE L2 -1231 2083 1806 2011 153 103 3 chr11 112617021 112617381 -38166172 - MSTD LTR MaLR 0 396 1 204 225 0 0 chr11 112617428 112617468 -38166085 + GA-rich Low_complexity Low_complexity 78 117 0 1968 157 0 3 chr11 112617840 112618152 -38165401 - AluJb SINE Alu -1 311 1 1916 122 10 48 chr11 112618896 112619207 -38164346 - AluSx SINE Alu -13 299 1 2220 113 0 19 chr11 112619943 112620261 -38163292 - AluJb SINE Alu 0 312 1 1131 310 40 62 chr11 112620388 112620680 -38162873 - ERVL LTR ERVL -2154 3610 3334 2250 103 36 0 chr11 112620680 112620981 -38162572 + AluSx SINE Alu 1 312 0 1131 310 40 62 chr11 112620981 112621239 -38162314 - ERVL LTR ERVL -2430 3334 3072 492 270 21 53 chr11 112621399 112621588 -38161965 + MLT1J LTR MaLR 329 511 0 1675 229 62 66 chr11 112621756 112621814 -38161739 - L1MC4a LINE L1 -856 5446 5389 2271 124 0 0 chr11 112621814 112622120 -38161433 - AluSx SINE Alu -2 310 5 1675 229 62 66 chr11 112622120 112622603 -38160950 - L1MC4a LINE L1 -913 5389 4905 189 0 0 0 chr11 112622603 112622624 -38160929 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 2129 96 0 7 chr11 112622626 112622907 -38160646 - AluSx SINE Alu -33 279 1 1675 229 62 66 chr11 112622907 112623013 -38160540 - L1MC4a LINE L1 -849 5453 5348 1752 107 9 0 chr11 112623018 112623251 -38160302 - AluSx SINE Alu -77 235 1 950 111 0 7 chr11 112623263 112623398 -38160155 - AluSg/x SINE Alu -18 294 161 2209 40 43 7 chr11 112623499 112623775 -38159778 - AluY SINE Alu -25 286 1 282 222 61 15 chr11 112623775 112623849 -38159704 - AluJo/FLAM SINE Alu -169 133 66 197 289 261 21 chr11 112623960 112624102 -38159451 + L2 LINE L2 3094 3269 -3 277 262 120 32 chr11 112625581 112625784 -38157769 - LTR16A LTR ERVL -8 442 175 369 308 34 0 chr11 112625835 112625952 -38157601 - LTR16A LTR ERVL -329 121 1 230 296 165 0 chr11 112625972 112626087 -38157466 - MIR SINE MIR -8 254 121 1660 184 17 42 chr11 112626381 112626752 -38156801 - MLT1A1 LTR MaLR 0 365 1 199 260 104 13 chr11 112626752 112626829 -38156724 + L2 LINE L2 2755 2838 -476 1056 147 20 40 chr11 112626838 112627036 -38156517 + MER20 DNA MER1_type 24 217 -2 494 249 203 52 chr11 112627630 112628015 -38155538 + L2 LINE L2 2827 3269 -44 407 19 19 0 chr11 112628214 112628266 -38155287 + (TTTAA)n Simple_repeat Simple_repeat 3 55 0 2209 90 11 0 chr11 112628266 112628545 -38155008 - AluSx SINE Alu -30 282 1 343 68 0 0 chr11 112629212 112629256 -38154297 + Alu SINE Alu 1 44 -258 2105 100 21 0 chr11 112629256 112629545 -38154008 + AluSx SINE Alu 5 299 -13 2314 46 29 7 chr11 112629850 112630130 -38153423 - L1PA8 LINE L1 -1 6171 5886 234 255 41 41 chr11 112630598 112630696 -38152857 + L1MC/D LINE L1 5774 5871 -1937 1506 193 11 4 chr11 112630715 112630995 -38152558 - AluJo SINE Alu -30 282 1 589 301 11 16 chr11 112631983 112632169 -38151384 + MIR SINE MIR 77 261 -1 2166 92 26 0 chr11 112632319 112632624 -38150929 + AluSq SINE Alu 1 313 0 22 0 0 0 chr11 112632678 112632700 -38150853 + AT_rich Low_complexity Low_complexity 1 22 0 18675 52 11 0 chr11 112632701 112635771 -38147782 - L1PA6 LINE L1 -55 6099 2996 2200 113 7 10 chr11 112636174 112636484 -38147069 + AluSp SINE Alu 1 309 -4 395 329 31 76 chr11 112636608 112636897 -38146656 + L2 LINE L2 2994 3269 -3 1831 133 4 11 chr11 112638778 112639049 -38144504 + AluJb SINE Alu 1 269 -43 304 236 0 0 chr11 112639183 112639238 -38144315 + 5S rRNA rRNA 1 55 -66 1593 191 67 12 chr11 112639272 112639676 -38143877 - L1M2 LINE L1 -4290 2559 2134 2282 89 0 3 chr11 112639705 112639998 -38143555 - AluSx SINE Alu -20 292 1 3038 116 127 98 chr11 112640060 112640591 -38142962 - MER39 LTR ERV1 -17 680 166 1748 153 0 10 chr11 112640591 112640879 -38142674 - AluJo SINE Alu -14 298 14 3038 116 127 98 chr11 112640879 112640957 -38142596 - MER39 LTR ERV1 -531 166 92 991 200 0 0 chr11 112640957 112641122 -38142431 + FRAM SINE Alu 1 165 -1 3038 116 127 98 chr11 112641122 112641179 -38142374 - MER39 LTR ERV1 -605 92 3 189 0 0 0 chr11 112641770 112641791 -38141762 + (T)n Simple_repeat Simple_repeat 1 21 0 5939 171 34 21 chr11 112641938 112643176 -38140377 - L1 LINE L1 -837 5309 4056 2346 89 0 10 chr11 112643182 112643484 -38140069 - AluY SINE Alu -12 299 1 1754 115 4 27 chr11 112644047 112644308 -38139245 - AluSx SINE Alu -57 255 1 547 160 19 0 chr11 112644308 112644414 -38139139 - MER2 DNA MER2_type -116 229 122 1028 135 5 8 chr11 112644416 112644632 -38138921 + AluSc SINE Alu 2 297 -12 880 142 39 0 chr11 112644632 112644759 -38138794 - MER2 DNA MER2_type -213 132 1 22 35 0 0 chr11 112646528 112646557 -38136996 + AT_rich Low_complexity Low_complexity 1 29 0 209 33 33 0 chr11 112646819 112646849 -38136704 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 1857 141 34 10 chr11 112647009 112647307 -38136246 + AluSx SINE Alu 1 305 -7 1978 123 11 3 chr11 112647316 112647600 -38135953 + AluSx SINE Alu 1 286 -26 1854 89 8 8 chr11 112647600 112647846 -38135707 + AluSc SINE Alu 44 291 -18 225 355 43 21 chr11 112648066 112648159 -38135394 - MIR SINE MIR -81 127 33 1498 176 39 20 chr11 112648327 112648633 -38134920 - AluJo SINE Alu 0 312 1 199 290 48 0 chr11 112648652 112648714 -38134839 - L3 LINE CR1 -3 1574 1510 290 252 206 46 chr11 112649200 112649331 -38134222 + MIR3 SINE MIR 34 185 -23 23 54 0 0 chr11 112650091 112650128 -38133425 + AT_rich Low_complexity Low_complexity 1 37 0 720 42 0 21 chr11 112650485 112650580 -38132973 - AluSg/x SINE Alu 0 310 218 1491 70 5 0 chr11 112650580 112650765 -38132788 - AluY SINE Alu -125 186 1 276 226 65 0 chr11 112651150 112651212 -38132341 - L2 LINE L2 0 3272 3207 737 183 0 29 chr11 112651580 112651717 -38131836 - FLAM_A SINE Alu 0 133 1 2463 114 22 16 chr11 112652131 112652498 -38131055 + THE1C LTR MaLR 7 375 0 3518 154 21 89 chr11 112652606 112653402 -38130151 + L1MB7 LINE L1 5398 6139 -45 2044 140 0 3 chr11 112657105 112657405 -38126148 - AluSq SINE Alu -14 299 1 1155 239 162 50 chr11 112657511 112658096 -38125457 + L1MC4a LINE L1 5404 6054 -1754 772 227 33 88 chr11 112658447 112658778 -38124775 + L1MC5 LINE L1 6649 6961 -1000 2090 86 0 67 chr11 112658825 112659139 -38124414 - AluY SINE Alu -18 293 1 1726 236 57 110 chr11 112659154 112659737 -38123816 + L1MC5 LINE L1 6963 7354 -454 738 233 44 11 chr11 112659737 112659917 -38123636 - MER5A DNA MER1_type 0 189 4 1726 236 57 110 chr11 112659917 112660350 -38123203 + L1MC5 LINE L1 7354 7808 0 432 269 98 8 chr11 112660354 112660618 -38122935 + L1M4 LINE L1 2852 3139 -3007 520 211 114 32 chr11 112660778 112660901 -38122652 + FLAM_A SINE Alu 1 133 0 336 336 75 30 chr11 112661006 112661140 -38122413 - L2 LINE L2 -19 3253 3114 697 237 112 0 chr11 112661368 112661583 -38121970 - L1M4 LINE L1 -2398 3748 3510 23 0 0 0 chr11 112661808 112661831 -38121722 + AT_rich Low_complexity Low_complexity 1 23 0 307 309 69 49 chr11 112662265 112662469 -38121084 - L1MC4a LINE L1 -1910 5898 5691 1890 156 14 0 chr11 112663225 112663514 -38120039 + AluSx SINE Alu 1 293 -19 1036 107 0 0 chr11 112664071 112664202 -38119351 + FLAM_C SINE Alu 1 131 -2 3871 130 82 10 chr11 112664521 112665122 -38118431 + LTR48B LTR ERV1 1 644 0 2452 73 0 10 chr11 112667402 112667716 -38115837 - AluY SINE Alu 0 311 1 2265 107 0 0 chr11 112668364 112668664 -38114889 - AluY SINE Alu -11 300 1 2220 108 13 0 chr11 112669235 112669542 -38114011 - AluSp SINE Alu -2 311 1 2130 110 7 7 chr11 112669864 112670164 -38113389 + AluSq SINE Alu 1 300 -13 1945 150 3 0 chr11 112670457 112670750 -38112803 + AluSx SINE Alu 1 294 -18 24 0 0 0 chr11 112671319 112671343 -38112210 + AT_rich Low_complexity Low_complexity 1 24 0 2082 114 3 14 chr11 112672143 112672440 -38111113 - AluSx SINE Alu -18 294 1 22 0 0 0 chr11 112673059 112673081 -38110472 + AT_rich Low_complexity Low_complexity 1 22 0 1258 234 127 24 chr11 112674051 112674359 -38109194 + L1ME1 LINE L1 5700 6064 -102 2180 89 3 36 chr11 112674359 112674662 -38108891 - AluSp SINE Alu -20 293 1 1258 234 127 24 chr11 112674662 112674771 -38108782 + L1ME1 LINE L1 6064 6160 -6 1308 135 35 66 chr11 112674933 112675192 -38108361 + MER2 DNA MER2_type 71 321 -24 1966 97 115 7 chr11 112676416 112676695 -38106858 - AluSx SINE Alu -3 309 1 760 120 94 17 chr11 112676748 112676865 -38106688 + FLAM_C SINE Alu 1 126 -7 188 339 66 57 chr11 112677222 112677523 -38106030 - L2 LINE L2 -2273 1041 738 253 282 109 56 chr11 112677637 112677903 -38105650 - L2 LINE L2 -2465 849 570 1228 202 116 64 chr11 112677933 112678103 -38105450 - Charlie4a DNA MER1_type -1488 473 313 1805 171 7 10 chr11 112678103 112678407 -38105146 + AluJb SINE Alu 1 303 -9 1228 202 116 64 chr11 112678407 112678686 -38104867 - Charlie4a DNA MER1_type -1648 313 1 2470 67 0 16 chr11 112679625 112679938 -38103615 + AluSc SINE Alu 1 308 -1 2200 113 7 10 chr11 112681864 112682174 -38101379 + AluSp SINE Alu 1 309 -4 395 329 31 76 chr11 112682298 112682587 -38100966 + L2 LINE L2 2994 3269 -3 1674 161 79 11 chr11 112684449 112684729 -38098824 + AluJb SINE Alu 1 299 -13 2417 106 0 0 chr11 112685014 112685325 -38098228 + AluSx SINE Alu 1 311 -1 204 75 100 0 chr11 112687301 112687341 -38096212 + T-rich Low_complexity Low_complexity 2 45 0 180 0 0 0 chr11 112687359 112687379 -38096174 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 1562 65 5 0 chr11 112690466 112690651 -38092902 + AluSp SINE Alu 1 186 -127 2043 145 0 10 chr11 112690807 112691110 -38092443 + AluSx SINE Alu 1 300 -12 1861 110 48 21 chr11 112692770 112693061 -38090492 - AluJb SINE Alu -8 304 6 2083 106 0 23 chr11 112693386 112693687 -38089866 + AluSx SINE Alu 1 294 -18 2076 132 51 40 chr11 112695522 112695893 -38087660 - THE1C LTR MaLR 0 375 1 622 200 17 8 chr11 112695937 112696057 -38087496 - L2 LINE L2 0 3313 3193 552 266 148 5 chr11 112696091 112696294 -38087259 - MIR SINE MIR -21 241 10 1745 150 3 58 chr11 112696702 112697015 -38086538 - AluJb SINE Alu -15 297 2 282 289 250 0 chr11 112697310 112697414 -38086139 - L2 LINE L2 -9 3263 3134 304 253 135 34 chr11 112697880 112698058 -38085495 - L2 LINE L2 -556 2758 2563 2241 96 0 0 chr11 112698380 112698697 -38084856 + AluSg SINE Alu 1 317 0 2108 113 17 3 chr11 112699117 112699417 -38084136 + AluJb SINE Alu 1 304 -8 2248 109 0 3 chr11 112699884 112700178 -38083375 + AluSx SINE Alu 1 293 -19 195 114 0 0 chr11 112700179 112700214 -38083339 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 * 203 149 0 43 chr11 112700211 112700258 -38083295 + (AGGGGG)n Simple_repeat Simple_repeat 2 46 0 * 700 127 40 7 chr11 112700252 112700402 -38083151 + GA-rich Low_complexity Low_complexity 1 155 0 258 303 0 0 chr11 112700417 112700483 -38083070 - MIR SINE MIR -77 131 66 2338 101 0 7 chr11 112700867 112701174 -38082379 + AluSx SINE Alu 1 305 -7 295 155 103 0 chr11 112701200 112701258 -38082295 - MIR SINE MIR -16 246 183 660 264 0 39 chr11 112701311 112701493 -38082060 - MER5B DNA MER1_type -1 177 3 1220 118 12 0 chr11 112702096 112702266 -38081287 - AluSq SINE Alu -11 302 131 2335 115 0 0 chr11 112702266 112702578 -38080975 - AluSx SINE Alu 0 312 1 2093 119 0 0 chr11 112703041 112703318 -38080235 - AluSq SINE Alu -36 277 1 821 232 41 10 chr11 112703352 112703546 -38080007 + MIR SINE MIR 31 230 -32 1548 143 18 63 chr11 112704031 112704317 -38079236 - AluJo SINE Alu -39 273 1 1595 268 78 27 chr11 112704946 112705622 -38077931 + L1M2a LINE L1 1587 2321 -4847 1016 275 85 59 chr11 112705603 112705703 -38077850 + L1M2 LINE L1 10 106 -6743 * 2468 80 0 0 chr11 112705703 112706004 -38077549 + AluSp SINE Alu 1 301 -12 1016 275 85 59 chr11 112706004 112706376 -38077177 + L1M2 LINE L1 106 494 -6355 434 351 60 0 chr11 112706543 112706711 -38076842 + L1M2 LINE L1 779 956 -5893 381 260 0 0 chr11 112707345 112707441 -38076112 + L1PA15-16 LINE L1 1474 1569 -5280 * 509 250 59 64 chr11 112707419 112707623 -38075930 + L1PA15-16 LINE L1 1334 1536 -5314 3071 209 68 36 chr11 112707626 112707903 -38075650 + L1MCa LINE L1 1630 1897 -4529 2437 72 0 3 chr11 112707903 112708207 -38075346 + AluSx SINE Alu 1 303 -9 3071 209 68 36 chr11 112708207 112708607 -38074946 + L1MCa LINE L1 1897 2283 -4143 2581 170 39 2 chr11 112708607 112709018 -38074535 + MSTB LTR MaLR 1 426 0 3071 209 68 36 chr11 112709018 112709304 -38074249 + L1MCa LINE L1 2283 2558 -3868 597 251 27 104 chr11 112709304 112709563 -38073990 + MER8 DNA MER2_type 1 239 0 3071 209 68 36 chr11 112709563 112710171 -38073382 + L1MCa LINE L1 2558 3372 -3054 * 4808 131 114 28 chr11 112710151 112710427 -38073126 + L1MA8 LINE L1 5183 5434 -857 2107 128 0 19 chr11 112710427 112710739 -38072814 + AluSx SINE Alu 1 306 -6 4808 131 114 28 chr11 112710739 112710851 -38072702 + L1MA8 LINE L1 5434 5535 -756 1895 115 260 22 chr11 112710851 112711216 -38072337 + LTR47A LTR ERVL 1 452 0 4808 131 114 28 chr11 112711216 112711845 -38071708 + L1MA8 LINE L1 5535 6286 -5 714 230 104 27 chr11 112711858 112712080 -38071473 - L1ME3A LINE L1 -53 6117 5879 1217 74 74 16 chr11 112712598 112712788 -38070765 + LTR1 LTR ERV1 1 201 -584 3422 85 17 25 chr11 112712788 112713269 -38070284 + LTR15 LTR ERV1 1 477 -16 3098 141 92 6 chr11 112713326 112713871 -38069682 + LTR1 LTR ERV1 194 785 0 644 183 46 0 chr11 112714275 112714406 -38069147 + L1MCa LINE L1 3894 4030 -2396 184 327 164 45 chr11 112714475 112714744 -38068809 + L2 LINE L2 2675 2975 -339 230 259 213 19 chr11 112715091 112715199 -38068354 + L3 LINE CR1 1376 1504 -73 188 35 35 0 chr11 112715573 112715602 -38067951 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 194 312 64 55 chr11 112715796 112715905 -38067648 - MIR SINE MIR -78 130 21 392 138 0 15 chr11 112716597 112716662 -38066891 - Charlie1a DNA MER1_type -1298 157 94 1668 103 0 0 chr11 112716678 112716892 -38066661 - AluSq SINE Alu -99 214 1 2197 107 21 0 chr11 112717277 112717567 -38065986 + AluSq SINE Alu 1 296 -17 248 259 76 76 chr11 112717619 112717750 -38065803 + MIR SINE MIR 32 162 -100 2089 155 83 6 chr11 112718251 112718613 -38064940 - MLT1B LTR MaLR 0 390 1 263 260 57 79 chr11 112721065 112721242 -38062311 - MIR SINE MIR -42 220 48 594 202 120 22 chr11 112721305 112721487 -38062066 + MIR SINE MIR 38 238 -24 612 265 48 43 chr11 112722285 112722444 -38061109 - MIR SINE MIR -31 231 69 2532 67 0 0 chr11 112722444 112722744 -38060809 - AluY SINE Alu -11 300 1 612 265 48 43 chr11 112722744 112722814 -38060739 - MIR SINE MIR -193 69 1 198 220 20 40 chr11 112723000 112723050 -38060503 + L2 LINE L2 3259 3307 -6 43734 33 21 1 chr11 112723050 112729076 -38054477 + L1PA2 LINE L1 2 6152 -3 360 346 0 23 chr11 112730135 112730268 -38053285 + MER5B DNA MER1_type 46 175 -3 254 237 82 89 chr11 112730500 112730631 -38052922 - L2 LINE L2 -148 3165 3036 402 211 58 10 chr11 112730631 112730735 -38052818 - MER91B DNA MER1_type -1 189 81 327 335 55 50 chr11 112730830 112731030 -38052523 + L1ME LINE L1 5629 5829 -341 2669 300 187 30 chr11 112731202 112731573 -38051980 - L2 LINE L2 -313 3000 2688 2285 81 3 14 chr11 112731573 112731869 -38051684 + AluY SINE Alu 1 293 -18 2669 300 187 30 chr11 112731869 112732349 -38051204 - L2 LINE L2 -625 2688 2284 1621 184 53 7 chr11 112732349 112732466 -38051087 + AluJb SINE Alu 1 111 -201 255 31 0 0 chr11 112732466 112732498 -38051055 + (CA)n Simple_repeat Simple_repeat 2 33 0 1621 184 53 7 chr11 112732498 112732663 -38050890 + AluJb SINE Alu 111 296 -16 2669 300 187 30 chr11 112732663 112733402 -38050151 - L2 LINE L2 -1029 2284 1159 471 303 66 19 chr11 112733455 112733666 -38049887 - L3 LINE CR1 -353 1224 1004 270 0 0 0 chr11 112734027 112734057 -38049496 + (TC)n Simple_repeat Simple_repeat 2 31 0 216 0 0 0 chr11 112734060 112734084 -38049469 + (TA)n Simple_repeat Simple_repeat 1 24 0 2101 119 25 0 chr11 112734164 112734449 -38049104 - AluSx SINE Alu -20 292 1 523 177 0 0 chr11 112735111 112735190 -38048363 + MADE1 DNA Mariner 2 80 0 423 261 78 13 chr11 112735398 112735551 -38048002 + MER112 DNA MER1_type 2 164 -96 1041 224 73 13 chr11 112735919 112736236 -38047317 + L1M4 LINE L1 4898 5233 -913 269 212 30 13 chr11 112736235 112736314 -38047239 + L1MA10 LINE L1 2 1014 -6084 * 12107 212 64 46 chr11 112737134 112737960 -38045593 + L1MA10 LINE L1 1617 2426 -4929 2177 116 10 10 chr11 112737960 112738271 -38045282 + AluSx SINE Alu 1 311 -1 12107 212 64 46 chr11 112738271 112739757 -38043796 + L1MA10 LINE L1 2426 3883 -3472 1528 171 4 0 chr11 112739757 112739991 -38043562 - MER46A DNA MER2_type 0 236 2 12107 212 64 46 chr11 112739991 112741256 -38042297 + L1MA10 LINE L1 3883 5123 -2232 2207 104 31 0 chr11 112741256 112741566 -38041987 + AluSx SINE Alu 1 319 0 12107 212 64 46 chr11 112741566 112741730 -38041823 + L1MA10 LINE L1 5123 5282 -2073 2256 103 0 7 chr11 112741730 112742030 -38041523 + AluSg SINE Alu 1 298 -12 12107 212 64 46 chr11 112742030 112743733 -38039820 + L1MA10 LINE L1 5282 6952 -403 1825 144 48 3 chr11 112743733 112744025 -38039528 + AluSx SINE Alu 1 305 -7 12107 212 64 46 chr11 112744025 112744097 -38039456 + L1MA10 LINE L1 6952 7021 -334 1314 198 48 0 chr11 112744097 112744324 -38039229 - MER8 DNA MER2_type 0 239 2 12107 212 64 46 chr11 112744324 112744577 -38038976 + L1MA10 LINE L1 7021 7224 -131 1817 156 40 13 chr11 112744613 112744915 -38038638 + AluSx SINE Alu 1 310 -2 23 33 0 0 chr11 112745170 112745200 -38038353 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr11 112745237 112745268 -38038285 + AT_rich Low_complexity Low_complexity 1 31 0 1366 142 24 73 chr11 112745433 112745500 -38038053 + L1MB3 LINE L1 5908 5977 -206 2053 105 0 64 chr11 112745500 112745813 -38037740 + AluSx SINE Alu 1 293 -19 2480 67 0 16 chr11 112745817 112746133 -38037420 + AluY SINE Alu 1 311 0 1366 142 24 73 chr11 112746133 112746349 -38037204 + L1MB3 LINE L1 5980 6182 -1 249 33 0 0 chr11 112746585 112746615 -38036938 + (T)n Simple_repeat Simple_repeat 1 30 0 2334 115 0 0 chr11 112746774 112747079 -38036474 - AluSx SINE Alu -7 305 1 1420 237 94 16 chr11 112747954 112748380 -38035173 + MLT1C LTR MaLR 9 467 0 187 167 71 0 chr11 112748399 112748441 -38035112 - MIR SINE MIR -155 107 63 1645 158 17 20 chr11 112748692 112748847 -38034706 - AluJo SINE Alu -21 291 136 2081 96 52 7 chr11 112748847 112749138 -38034415 - AluSq SINE Alu -9 304 1 1645 158 17 20 chr11 112749138 112749274 -38034279 - AluJo SINE Alu -176 136 1 346 264 186 29 chr11 112749276 112749416 -38034137 + MLT1J LTR MaLR 310 471 -40 260 283 81 63 chr11 112749576 112749799 -38033754 - L2 LINE L2 -11 3302 3076 2144 139 0 0 chr11 112749818 112750128 -38033425 - AluSg SINE Alu 0 310 1 1073 101 0 7 chr11 112750130 112750269 -38033284 - AluSq/x SINE Alu -174 138 1 563 168 45 117 chr11 112750270 112750449 -38033104 - MER58 DNA MER1_type -2254 166 1 213 143 0 0 chr11 112750820 112750855 -38032698 + L2 LINE L2 3236 3270 -2 880 142 39 0 chr11 112752872 112752999 -38030554 + MER2 DNA MER2_type 1 132 -213 1039 130 5 8 chr11 112752999 112753215 -38030338 - AluSc SINE Alu -12 297 2 1075 181 62 0 chr11 112753217 112753323 -38030230 + MER2 DNA MER2_type 122 220 -125 1858 117 100 0 chr11 112753323 112753604 -38029949 + AluSx SINE Alu 1 309 -3 1075 181 62 0 chr11 112753604 112753707 -38029846 + MER2 DNA MER2_type 220 344 -1 2438 39 4 0 chr11 112753869 112754174 -38029379 - AluY SINE Alu 0 306 1 2233 117 7 3 chr11 112754222 112754531 -38029022 - AluSx SINE Alu -2 310 1 195 167 36 131 chr11 112754573 112754657 -38028896 + L2 LINE L2 3157 3232 -40 247 428 52 0 chr11 112754885 112755079 -38028474 - L2 LINE L2 -624 2690 2487 289 292 50 42 chr11 112755091 112755211 -38028342 - L2 LINE L2 -575 2739 2619 1889 282 66 52 chr11 112755963 112756367 -38027186 + HERV16 LTR ERVL 732 1129 -3867 2260 124 0 0 chr11 112756367 112756674 -38026879 + AluSx SINE Alu 1 307 -5 1889 282 66 52 chr11 112756674 112756831 -38026722 + HERV16 LTR ERVL 1129 1282 -3714 1542 181 77 42 chr11 112756831 112757184 -38026369 + MLT1A1 LTR MaLR 1 365 0 1889 282 66 52 chr11 112757184 112757552 -38026001 + HERV16 LTR ERVL 1282 1643 -3353 2282 102 0 0 chr11 112757552 112757846 -38025707 - AluSx SINE Alu -18 294 1 1889 282 66 52 chr11 112757846 112758365 -38025188 + HERV16 LTR ERVL 1643 2278 -2718 336 244 30 92 chr11 112758399 112758500 -38025053 - L2 LINE L2 -163 3150 3061 2201 117 0 19 chr11 112758500 112758817 -38024736 + AluSx SINE Alu 1 311 -1 336 244 30 92 chr11 112758817 112758879 -38024674 - L2 LINE L2 -252 3061 2997 * 347 246 44 28 chr11 112758866 112759074 -38024479 - L2 LINE L2 -816 2498 2211 1165 259 118 18 chr11 112759074 112759525 -38024028 - L2 LINE L2 -1448 1866 1371 236 253 291 16 chr11 112759536 112759718 -38023835 - L2 LINE L2 -534 2780 2549 577 244 87 62 chr11 112759763 112760005 -38023548 + L2 LINE L2 3064 3311 -2 254 152 0 22 chr11 112760094 112760140 -38023413 - AluSq SINE Alu -125 178 134 2099 110 38 0 chr11 112760251 112760541 -38023012 + AluSq SINE Alu 1 301 -12 278 309 222 16 chr11 112762570 112762696 -38020857 + L2 LINE L2 3121 3272 0 274 285 84 6 chr11 112762741 112762897 -38020656 - MIR SINE MIR -33 229 63 199 368 18 0 chr11 112763860 112763917 -38019636 + L2 LINE L2 3122 3179 -93 463 100 29 29 chr11 112764597 112764667 -38018886 + FLAM SINE Alu 48 117 -26 237 65 0 0 chr11 112764701 112764732 -38018821 + (A)n Simple_repeat Simple_repeat 1 31 0 482 157 0 131 chr11 112764748 112764869 -38018684 + AluJo/FLAM SINE Alu 1 100 -202 2454 64 0 3 chr11 112764869 112765165 -38018388 - AluY SINE Alu -15 296 2 482 157 0 131 chr11 112765165 112765196 -38018357 + AluJo/FLAM SINE Alu 100 133 -169 21 0 0 0 chr11 112765852 112765873 -38017680 + AT_rich Low_complexity Low_complexity 1 21 0 2065 128 17 7 chr11 112766211 112766509 -38017044 - AluSx SINE Alu -11 301 1 2301 108 0 0 chr11 112766966 112767262 -38016291 - AluSx SINE Alu -15 297 2 21 0 0 31 chr11 112767262 112767275 -38016278 + AT_rich Low_complexity Low_complexity 1 13 -18 2455 70 0 0 chr11 112767275 112767574 -38015979 - AluY SINE Alu -12 299 1 21 0 0 31 chr11 112767574 112767592 -38015961 + AT_rich Low_complexity Low_complexity 13 31 0 1797 170 0 7 chr11 112768638 112768932 -38014621 - AluSx SINE Alu -7 305 14 1835 114 4 25 chr11 112768938 112769218 -38014335 - AluSx SINE Alu -12 300 27 747 136 0 0 chr11 112769218 112769321 -38014232 - AluSq/x SINE Alu -207 105 3 527 309 100 53 chr11 112769415 112769755 -38013798 + LTR67 LTR ERVL 2 357 -200 267 239 0 30 chr11 112769784 112769851 -38013702 + MLT2B3 LTR ERVL 1 65 -489 2045 134 7 0 chr11 112770084 112770382 -38013171 + AluSx SINE Alu 1 300 -12 1049 132 0 6 chr11 112770684 112770843 -38012710 + AluSg/x SINE Alu 137 294 -18 2130 119 0 10 chr11 112770855 112771158 -38012395 + AluSx SINE Alu 1 300 -12 22 56 0 0 chr11 112771158 112771194 -38012359 + AT_rich Low_complexity Low_complexity 1 36 0 396 295 99 93 chr11 112771359 112771528 -38012025 + ERVL LTR ERVL 1215 1382 -4382 2335 96 0 10 chr11 112771528 112771830 -38011723 - AluSq SINE Alu -14 299 1 396 295 99 93 chr11 112771830 112772196 -38011357 + ERVL LTR ERVL 1382 1753 -4011 1700 251 59 79 chr11 112772487 112772601 -38010952 + L1MC4a LINE L1 5260 5375 -984 1825 78 13 0 chr11 112772601 112772833 -38010720 + AluSx SINE Alu 1 235 -77 1700 251 59 79 chr11 112772833 112772944 -38010609 + L1MC4a LINE L1 5375 5487 -872 2129 96 0 7 chr11 112772944 112773225 -38010328 + AluSx SINE Alu 1 279 -33 189 0 0 0 chr11 112773227 112773248 -38010305 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 1700 251 59 79 chr11 112773248 112773717 -38009836 + L1MC4a LINE L1 5488 5785 -574 2280 124 0 0 chr11 112773731 112774038 -38009515 + AluSx SINE Alu 5 311 -1 492 270 21 53 chr11 112774262 112774451 -38009102 - MLT1J LTR MaLR 0 511 329 1124 313 40 60 chr11 112774611 112774868 -38008685 + ERVL LTR ERVL 3072 3333 -2431 2250 103 36 0 chr11 112774868 112775169 -38008384 - AluSx SINE Alu 0 312 1 1124 313 40 60 chr11 112775169 112775461 -38008092 + ERVL LTR ERVL 3333 3610 -2154 2177 119 0 19 chr11 112775588 112775906 -38007647 + AluJb SINE Alu 1 312 0 1925 122 10 48 chr11 112776642 112776954 -38006599 + AluSx SINE Alu 1 300 -12 1719 192 0 3 chr11 112777696 112777998 -38005555 + AluJb SINE Alu 1 301 -11 562 115 0 0 chr11 112778526 112778604 -38004949 + U6 snRNA snRNA 1 78 -29 276 266 75 0 chr11 112778768 112778862 -38004691 - L2 LINE L2 -2 3270 3170 2054 141 0 3 chr11 112779024 112779337 -38004216 - AluSx SINE Alu 0 312 1 949 257 39 54 chr11 112779342 112779673 -38003880 + Charlie2 DNA MER1_type 4 329 -2453 787 240 82 46 chr11 112779665 112779699 -38003854 + Charlie2 DNA MER1_type 1856 1887 -975 * 746 219 21 21 chr11 112779699 112779886 -38003667 - MER53 DNA DNA 0 189 3 787 240 82 46 chr11 112779886 112780180 -38003373 + Charlie2 DNA MER1_type 1887 2196 -666 2009 141 7 0 chr11 112780340 112780637 -38002916 - AluY SINE Alu -12 299 1 1037 150 22 104 chr11 112780637 112780925 -38002628 - L1M3 LINE L1 -401 5779 5513 219 197 0 82 chr11 112780974 112781035 -38002518 - MIR SINE MIR -121 87 32 2300 81 7 7 chr11 112782813 112783110 -38000443 + AluSc SINE Alu 1 297 -12 337 194 28 28 chr11 112784173 112784245 -37999308 + MIR3 SINE MIR 119 190 -18 2306 91 10 0 chr11 112784389 112784686 -37998867 - AluSx SINE Alu -12 300 1 710 204 32 86 chr11 112784861 112784923 -37998630 - MER5A DNA MER1_type -1 188 124 1529 178 3 37 chr11 112784923 112785221 -37998332 + AluJo SINE Alu 1 288 -24 710 204 32 86 chr11 112785221 112785344 -37998209 - MER5A DNA MER1_type -65 124 13 23 0 0 0 chr11 112787072 112787095 -37996458 + AT_rich Low_complexity Low_complexity 1 23 0 697 157 0 0 chr11 112788147 112788249 -37995304 + LTR47A LTR ERVL 259 360 -92 1627 182 4 4 chr11 112788249 112788518 -37995035 + AluJb SINE Alu 1 269 -43 304 236 0 0 chr11 112788652 112788707 -37994846 + 5S rRNA rRNA 1 55 -66 2420 84 0 0 chr11 112788774 112789071 -37994482 + AluSq SINE Alu 1 297 -16 559 234 39 7 chr11 112789395 112789549 -37994004 - MER103 DNA DNA -7 159 1 792 186 29 21 chr11 112789667 112789976 -37993577 + MLT1A1 LTR MaLR 17 374 0 312 308 75 9 chr11 112791560 112791667 -37991886 + L2 LINE L2 3159 3272 0 2150 128 3 0 chr11 112792099 112792396 -37991157 - AluSx SINE Alu -14 298 1 3026 121 31 9 chr11 112792704 112793151 -37990402 + MSTB2 LTR MaLR 1 457 0 2000 135 0 0 chr11 112793388 112793670 -37989883 - AluSx SINE Alu -30 282 1 2019 105 11 7 chr11 112793699 112793985 -37989568 - AluSx SINE Alu -25 287 1 2473 62 3 16 chr11 112794130 112794438 -37989115 - AluY SINE Alu -7 304 1 2305 75 20 0 chr11 112795680 112795973 -37987580 + AluY SINE Alu 1 299 -12 2550 148 48 35 chr11 112796532 112796993 -37986560 + MLT1C LTR MaLR 1 467 0 403 243 142 30 chr11 112797547 112797716 -37985837 + MIR SINE MIR 62 249 -13 33 0 0 0 chr11 112798099 112798132 -37985421 + AT_rich Low_complexity Low_complexity 1 33 0 2015 98 34 27 chr11 112798671 112798966 -37984587 + AluSx SINE Alu 1 297 -15 202 293 120 15 chr11 112799802 112799935 -37983618 - L2 LINE L2 -24 3289 3143 25 0 0 0 chr11 112800009 112800034 -37983519 + AT_rich Low_complexity Low_complexity 1 25 0 2270 200 135 80 chr11 112800055 112800804 -37982749 + MER21B LTR ERV1 14 803 -60 334 224 145 93 chr11 112801202 112801234 -37982319 + L1M4 LINE L1 2128 2157 -3989 2148 100 14 7 chr11 112801234 112801524 -37982029 + AluSx SINE Alu 1 292 -20 334 224 145 93 chr11 112801524 112801898 -37981655 + L1M4 LINE L1 2157 2555 -3591 303 233 171 31 chr11 112802020 112802213 -37981340 + L1M4 LINE L1 2843 3062 -3084 15555 199 37 22 chr11 112802494 112804981 -37978572 + L1PA15 LINE L1 1289 3738 -3078 2012 143 0 3 chr11 112804981 112805299 -37978254 - AluSx SINE Alu 0 317 1 15555 199 37 22 chr11 112805299 112808262 -37975291 + L1PA15 LINE L1 3738 6814 -2 605 208 8 15 chr11 112809199 112809329 -37974224 + LTR33 LTR ERVL 16 144 -377 892 260 59 5 chr11 112809519 112809738 -37973815 - MIR SINE MIR -21 241 11 1864 133 63 0 chr11 112809870 112810155 -37973398 + AluSx SINE Alu 3 305 -7 343 307 52 69 chr11 112810862 112811093 -37972460 - MIR SINE MIR -16 246 20 2131 126 3 3 chr11 112811276 112811578 -37971975 + AluSx SINE Alu 1 302 -10 383 209 100 9 chr11 112811783 112811893 -37971660 - L1ME3A LINE L1 -238 5932 5813 293 303 132 18 chr11 112812054 112812282 -37971271 + L1PA8A LINE L1 5575 5828 -303 * 367 264 154 55 chr11 112812089 112812296 -37971257 + L1MC4a LINE L1 5605 5851 -1957 1806 208 199 19 chr11 112812296 112812773 -37970780 + MLT1F1 LTR MaLR 1 563 -4 367 264 154 55 chr11 112812773 112812857 -37970696 + L1MC4a LINE L1 5851 5925 -1883 25 75 0 0 chr11 112813011 112813064 -37970489 + AT_rich Low_complexity Low_complexity 1 53 0 1998 137 0 10 chr11 112813488 112813788 -37969765 + AluSx SINE Alu 1 297 -15 326 279 77 49 chr11 112814226 112814409 -37969144 + MIR SINE MIR 63 250 -12 1795 166 40 3 chr11 112814655 112814956 -37968597 - AluJb SINE Alu 0 312 1 301 276 108 42 chr11 112814983 112815197 -37968356 + L2 LINE L2 3079 3306 -7 462 146 58 48 chr11 112815361 112815464 -37968089 - MIR SINE MIR 0 262 159 284 77 0 39 chr11 112815537 112815589 -37967964 - Alu SINE Alu -5 297 248 1591 163 0 34 chr11 112816125 112816419 -37967134 + AluJo SINE Alu 29 312 0 2104 100 0 11 chr11 112816439 112816743 -37966810 - AluSx SINE Alu 0 305 5 1451 53 0 0 chr11 112816754 112816924 -37966629 - AluSg/x SINE Alu -20 290 121 2156 136 0 0 chr11 112817761 112818063 -37965490 + AluSx SINE Alu 1 302 -10 3165 167 114 35 chr11 112818146 112818971 -37964582 - L1MB7 LINE L1 0 6184 5295 880 159 0 0 chr11 112819033 112819165 -37964388 - FLAM_C SINE Alu -11 132 1 22 0 0 0 chr11 112819190 112819212 -37964341 + AT_rich Low_complexity Low_complexity 1 22 0 490 138 35 0 chr11 112819233 112819320 -37964233 + L1MA8 LINE L1 6066 6155 -136 * 2348 145 32 33 chr11 112819316 112820203 -37963350 + L1MA7 LINE L1 4835 5722 -569 1965 128 77 20 chr11 112820203 112820556 -37962997 - THE1C LTR MaLR 0 375 3 10203 97 40 42 chr11 112820558 112822141 -37961412 - THE1C-int LTR MaLR 0 1580 1 1927 126 81 11 chr11 112822144 112822492 -37961061 - THE1C LTR MaLR -3 372 1 2348 145 32 33 chr11 112822492 112822958 -37960595 + L1MA7 LINE L1 5725 6289 -2 526 101 131 0 chr11 112822958 112823052 -37960501 + L1MA8 LINE L1 6163 6274 -17 282 234 42 120 chr11 112823376 112823543 -37960010 + MIR SINE MIR 86 239 -23 272 365 74 55 chr11 112823548 112823912 -37959641 + L2 LINE L2 2859 3229 -43 2047 119 3 16 chr11 112825614 112825917 -37957636 + AluSx SINE Alu 1 299 -13 2263 105 0 0 chr11 112826365 112826660 -37956893 - AluSx SINE Alu -13 299 5 17609 51 11 1 chr11 112829401 112831810 -37951743 - L1P LINE L1 -1439 4707 2276 5154 166 23 27 chr11 112831806 112832816 -37950737 - L1P LINE L1 -5130 1016 11 * 2376 163 39 5 chr11 112832890 112833302 -37950251 - MSTB LTR MaLR 0 426 1 8892 170 35 13 chr11 112833302 112834533 -37949020 - MSTB-int LTR MaLR 0 1651 374 2544 60 0 0 chr11 112834533 112834833 -37948720 - AluY SINE Alu -11 300 1 8892 170 35 13 chr11 112834833 112835216 -37948337 - MSTB-int LTR MaLR -1277 374 1 2526 156 26 2 chr11 112835216 112835632 -37947921 - MSTB LTR MaLR 0 426 1 388 293 15 15 chr11 112835933 112836066 -37947487 + GA-rich Low_complexity Low_complexity 2 134 0 399 41 0 0 chr11 112836412 112836461 -37947092 + (TG)n Simple_repeat Simple_repeat 2 50 0 270 316 41 10 chr11 112836669 112836767 -37946786 - L3 LINE CR1 -124 1453 1353 * 351 291 177 7 chr11 112836766 112836907 -37946646 - L2 LINE L2 -9 3304 3140 204 284 304 7 chr11 112836971 112837119 -37946434 - L2 LINE L2 -1045 2269 2078 539 342 102 57 chr11 112837905 112838569 -37944984 - L3 LINE CR1 -808 769 76 3126 190 45 17 chr11 112838938 112839742 -37943811 + Charlie5 DNA MER1_type 12 837 -1775 2339 89 0 3 chr11 112840193 112840496 -37943057 - AluSx SINE Alu -10 302 1 2055 173 59 2 chr11 112840505 112841193 -37942360 + Charlie5 DNA MER1_type 838 1623 -989 2945 142 67 7 chr11 112841195 112841759 -37941794 + LTR1 LTR ERV1 183 780 -5 2388 93 0 0 chr11 112841759 112842069 -37941484 - AluSg SINE Alu 0 310 1 2530 230 36 51 chr11 112842083 112842744 -37940809 + L1ME2 LINE L1 5002 5671 -493 750 138 0 97 chr11 112842744 112842889 -37940664 + FLAM_C SINE Alu 1 131 -2 2530 230 36 51 chr11 112842889 112842911 -37940642 + L1ME2 LINE L1 5671 5692 -472 2028 139 0 3 chr11 112842911 112843205 -37940348 + AluSx SINE Alu 1 293 -19 2530 230 36 51 chr11 112843205 112843290 -37940263 + L1ME2 LINE L1 5692 5777 -387 2253 104 0 3 chr11 112843290 112843587 -37939966 + AluSq SINE Alu 1 296 -17 2530 230 36 51 chr11 112843587 112843979 -37939574 + L1ME2 LINE L1 5777 6153 -11 23 0 0 0 chr11 112844355 112844378 -37939175 + AT_rich Low_complexity Low_complexity 1 23 0 1574 193 19 47 chr11 112844542 112844863 -37938690 + AluJo SINE Alu 1 312 0 522 115 0 0 chr11 112845037 112845115 -37938438 + U6 snRNA snRNA 1 78 -29 284 266 75 0 chr11 112845279 112845373 -37938180 - L2 LINE L2 -2 3270 3170 2064 141 0 3 chr11 112845535 112845848 -37937705 - AluSx SINE Alu 0 312 1 827 253 20 51 chr11 112845853 112846149 -37937404 + Charlie2 DNA MER1_type 4 290 -2492 1432 246 115 47 chr11 112846176 112846210 -37937343 + Charlie2 DNA MER1_type 1856 1886 -976 651 219 21 21 chr11 112846210 112846397 -37937156 - MER53 DNA DNA 0 189 3 1432 246 115 47 chr11 112846397 112846851 -37936702 + Charlie2 DNA MER1_type 1886 2308 -554 2074 131 10 0 chr11 112846851 112847148 -37936405 - AluSx SINE Alu -12 300 1 1432 246 115 47 chr11 112847148 112847597 -37935956 + Charlie2 DNA MER1_type 2308 2858 -4 21 0 0 0 chr11 112848126 112848147 -37935406 + AT_rich Low_complexity Low_complexity 1 21 0 345 47 0 0 chr11 112848905 112848948 -37934605 + (TG)n Simple_repeat Simple_repeat 1 43 0 601 257 49 41 chr11 112849454 112849699 -37933854 - MIR SINE MIR -8 254 8 434 279 217 55 chr11 112850027 112850360 -37933193 - L2 LINE L2 -1208 2106 1829 2341 89 0 10 chr11 112850360 112850662 -37932891 - AluY SINE Alu -12 299 1 434 279 217 55 chr11 112850662 112851041 -37932512 - L2 LINE L2 -1485 1829 1278 1823 123 0 19 chr11 112851225 112851485 -37932068 - AluSx SINE Alu -57 255 1 186 43 0 0 chr11 112851566 112851589 -37931964 + (TC)n Simple_repeat Simple_repeat 2 24 0 1584 168 11 25 chr11 112851589 112851869 -37931684 - AluJb SINE Alu -24 288 13 1152 242 33 76 chr11 112851877 112852389 -37931164 - Charlie8 DNA MER1_type -1888 529 40 532 263 38 11 chr11 112852401 112852587 -37930966 + L1MC4a LINE L1 7618 7808 0 2098 120 0 3 chr11 112852664 112852971 -37930582 - AluSx SINE Alu 0 307 2 227 298 0 0 chr11 112853002 112853049 -37930504 + L2 LINE L2 3205 3251 -21 234 0 0 0 chr11 112854096 112854122 -37929431 + (A)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr11 112854836 112854865 -37928688 + AT_rich Low_complexity Low_complexity 1 29 0 511 247 78 0 chr11 112855093 112855259 -37928294 - MER104 DNA MER2_type -1 179 1 24 0 0 0 chr11 112855698 112855722 -37927831 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr11 112856699 112856728 -37926825 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr11 112857086 112857116 -37926437 + AT_rich Low_complexity Low_complexity 1 30 0 371 235 7 44 chr11 112857116 112857252 -37926301 - HAL1b LINE L1 -8 1340 1210 193 118 39 0 chr11 112857271 112857322 -37926231 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 456 252 128 52 chr11 112857396 112857646 -37925907 - L2 LINE L2 0 3313 3045 305 130 0 0 chr11 112857934 112857980 -37925573 + MER75 DNA T2_type 459 504 0 1608 134 4 4 chr11 112858025 112858264 -37925289 - AluSx SINE Alu -10 302 64 2034 133 3 0 chr11 112858678 112858971 -37924582 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr11 112858997 112859018 -37924535 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr11 112860178 112860201 -37923352 + (TA)n Simple_repeat Simple_repeat 2 24 0 448 256 15 66 chr11 112860401 112860538 -37923015 + MER5B DNA MER1_type 3 132 -46 182 250 58 19 chr11 112860657 112860709 -37922844 - MIR SINE MIR -62 146 93 3277 52 5 7 chr11 112860849 112861271 -37922282 + L1PA5 LINE L1 5731 6151 -3 507 317 102 47 chr11 112861280 112861643 -37921910 - L2 LINE L2 -65 3207 2825 597 349 46 0 chr11 112861711 112861929 -37921624 - L2 LINE L2 -434 2880 2653 2075 105 21 0 chr11 112862978 112863263 -37920290 - AluSx SINE Alu -21 291 1 2017 142 0 19 chr11 112864604 112864921 -37918632 + AluJo SINE Alu 1 311 -1 886 172 0 0 chr11 112864953 112865098 -37918455 + AluSg/x SINE Alu 167 311 -1 936 164 40 51 chr11 112865142 112865319 -37918234 + AluJo SINE Alu 1 175 -137 318 238 0 0 chr11 112865637 112865700 -37917853 - L2 LINE L2 -1 3312 3250 2073 154 0 3 chr11 112866282 112866594 -37916959 + AluSx SINE Alu 1 311 -1 748 229 88 10 chr11 112866725 112866930 -37916623 + MIR SINE MIR 2 222 -40 759 151 8 0 chr11 112866961 112867101 -37916452 - FLAM_A SINE Alu 0 144 4 21 36 0 0 chr11 112867104 112867132 -37916421 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 112867555 112867576 -37915977 + AT_rich Low_complexity Low_complexity 1 21 0 1550 185 35 21 chr11 112867633 112867920 -37915633 + AluJo SINE Alu 1 291 -21 615 202 97 0 chr11 112868781 112868895 -37914658 + FLAM_A SINE Alu 1 125 -8 3012 156 43 10 chr11 112869650 112870253 -37913300 - MER39 LTR ERV1 0 707 85 217 236 112 45 chr11 112870720 112870809 -37912744 - MIR SINE MIR -1 261 167 751 184 0 29 chr11 112871103 112871239 -37912314 + FLAM_C SINE Alu 1 132 -1 2226 98 0 3 chr11 112871368 112871683 -37911870 + AluSp SINE Alu 1 314 0 741 333 128 7 chr11 112871806 112872250 -37911303 + L2 LINE L2 2816 3313 0 2042 136 14 0 chr11 112872560 112872855 -37910698 - AluSx SINE Alu -9 303 5 271 281 56 35 chr11 112876830 112876938 -37906615 - MIR SINE MIR -68 140 36 3277 52 5 7 chr11 112877021 112877443 -37906110 + L1PA5 LINE L1 5731 6151 -3 507 317 102 47 chr11 112877452 112877815 -37905738 - L2 LINE L2 -65 3207 2825 597 349 46 0 chr11 112877883 112878101 -37905452 - L2 LINE L2 -434 2880 2653 2075 105 21 0 chr11 112879150 112879435 -37904118 - AluSx SINE Alu -21 291 1 2017 142 0 19 chr11 112880775 112881092 -37902461 + AluJo SINE Alu 1 311 -1 886 172 0 0 chr11 112881124 112881269 -37902284 + AluSg/x SINE Alu 167 311 -1 936 164 40 51 chr11 112881313 112881490 -37902063 + AluJo SINE Alu 1 175 -137 318 238 0 0 chr11 112881808 112881871 -37901682 - L2 LINE L2 -1 3312 3250 2073 154 0 3 chr11 112882453 112882765 -37900788 + AluSx SINE Alu 1 311 -1 748 229 88 10 chr11 112882896 112883101 -37900452 + MIR SINE MIR 2 222 -40 759 151 8 0 chr11 112883132 112883272 -37900281 - FLAM_A SINE Alu 0 144 4 21 36 0 0 chr11 112883275 112883303 -37900250 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 112883727 112883748 -37899805 + AT_rich Low_complexity Low_complexity 1 21 0 1528 188 35 21 chr11 112883805 112884092 -37899461 + AluJo SINE Alu 1 291 -21 615 202 97 0 chr11 112884953 112885067 -37898486 + FLAM_A SINE Alu 1 125 -8 3012 156 43 10 chr11 112885822 112886425 -37897128 - MER39 LTR ERV1 0 707 85 217 236 112 45 chr11 112886892 112886981 -37896572 - MIR SINE MIR -1 261 167 751 184 0 29 chr11 112887275 112887411 -37896142 + FLAM_C SINE Alu 1 132 -1 2226 98 0 3 chr11 112887540 112887855 -37895698 + AluSp SINE Alu 1 314 0 741 333 128 7 chr11 112887978 112888422 -37895131 + L2 LINE L2 2816 3313 0 2090 134 13 0 chr11 112888728 112889027 -37894526 - AluSx SINE Alu -9 303 1 246 170 38 0 chr11 112889138 112889191 -37894362 + MIR SINE MIR 70 124 -138 1162 213 25 123 chr11 112889387 112889836 -37893717 - LTR55 LTR ERV -8 540 49 411 21 0 0 chr11 112889836 112889884 -37893669 + (TA)n Simple_repeat Simple_repeat 1 48 0 2054 108 39 3 chr11 112889885 112890171 -37893382 - AluSx SINE Alu -16 296 1 1162 213 25 123 chr11 112890171 112890311 -37893242 - LTR55 LTR ERV -498 50 7 1879 154 114 28 chr11 112890824 112891253 -37892300 + MER31B LTR ERV1 1 466 0 1218 257 79 5 chr11 112891333 112891711 -37891842 + L1MC5 LINE L1 5377 5782 -2026 395 240 160 7 chr11 112891809 112891959 -37891594 + L1MC5 LINE L1 5764 5936 -1872 718 188 115 88 chr11 112892324 112892585 -37890968 + L1MC5 LINE L1 6692 6959 -1002 282 292 80 46 chr11 112892631 112892956 -37890597 - L1M4 LINE L1 -1164 4982 4647 24 67 0 0 chr11 112893130 112893175 -37890378 + AT_rich Low_complexity Low_complexity 1 45 0 1355 125 34 5 chr11 112895675 112895883 -37887670 - AluSq SINE Alu -99 214 1 1820 130 0 0 chr11 112897168 112897415 -37886138 - AluSq SINE Alu -65 248 2 2103 118 0 16 chr11 112898624 112898928 -37884625 - AluSx SINE Alu -13 299 1 272 365 74 55 chr11 112900632 112900996 -37882557 - L2 LINE L2 -43 3229 2859 282 234 42 120 chr11 112901001 112901168 -37882385 - MIR SINE MIR -23 239 86 526 101 131 0 chr11 112901492 112901591 -37881962 - L1MA8 LINE L1 -17 6274 6163 1372 137 45 39 chr11 112901591 112902052 -37881501 - L1MA7 LINE L1 -2 6289 5723 1927 126 81 11 chr11 112902052 112902400 -37881153 + THE1C LTR MaLR 1 372 -3 4242 88 55 82 chr11 112902403 112903179 -37880374 + THE1C-int LTR MaLR 1 755 -825 1314 126 5 25 chr11 112903699 112903897 -37879656 + AluSg/x SINE Alu 106 299 -11 799 268 47 95 chr11 112904284 112904469 -37879084 + L2 LINE L2 2952 3111 -202 2045 133 7 0 chr11 112904469 112904770 -37878783 - AluSx SINE Alu -7 305 3 799 268 47 95 chr11 112904770 112904964 -37878589 + L2 LINE L2 3111 3313 0 37877 67 16 5 chr11 112905045 112911123 -37872430 + L1PA6 LINE L1 11 6154 0 3713 57 0 4 chr11 112911125 112911598 -37871955 + L1PA5 LINE L1 5677 6147 -7 219 125 0 0 chr11 112911798 112911838 -37871715 + (CAAT)n Simple_repeat Simple_repeat 3 42 0 190 279 29 15 chr11 112912919 112912987 -37870566 + MER5C DNA MER1_type 18 86 -238 437 302 170 9 chr11 112913737 112913949 -37869604 + MIR SINE MIR 14 259 -3 413 162 19 38 chr11 112914331 112914436 -37869117 + L1MB3 LINE L1 6080 6182 -1 185 313 60 0 chr11 112915045 112915128 -37868425 - L2 LINE L2 0 3272 3185 449 235 295 6 chr11 112916176 112916359 -37867194 - MIR SINE MIR 0 262 27 660 232 166 12 chr11 112916371 112916630 -37866923 + L2 LINE L2 2347 2645 -669 521 233 53 13 chr11 112916661 112916811 -37866742 + MLT1K LTR MaLR 431 586 -2 194 275 225 50 chr11 112917149 112917269 -37866284 + MIR SINE MIR 120 260 -2 27 49 0 0 chr11 112919238 112919279 -37864274 + GC_rich Low_complexity Low_complexity 1 41 0 226 301 140 0 chr11 112920578 112920671 -37862882 + L2 LINE L2 2913 3018 -254 1542 188 30 67 chr11 112920707 112920790 -37862763 + MLT1A1 LTR MaLR 7 92 -273 1925 113 13 62 chr11 112920790 112921099 -37862454 + AluSx SINE Alu 5 298 -14 1542 188 30 67 chr11 112921099 112921388 -37862165 + MLT1A1 LTR MaLR 92 365 0 242 385 40 0 chr11 112921739 112921939 -37861614 + L2 LINE L2 2829 3036 -236 684 294 191 3 chr11 112921996 112922298 -37861255 + L2 LINE L2 2643 3003 -269 260 365 48 0 chr11 112922314 112922418 -37861135 + L2 LINE L2 3111 3219 -94 2061 137 3 0 chr11 112922488 112922787 -37860766 - AluSx SINE Alu -12 300 1 790 300 40 60 chr11 112922804 112923258 -37860295 + LTR67 LTR ERVL 107 551 -6 249 277 31 0 chr11 112923311 112923376 -37860177 - L2 LINE L2 -8 3305 3239 183 317 49 0 chr11 112923463 112923545 -37860008 + L2 LINE L2 3183 3268 -4 378 229 64 55 chr11 112923691 112923800 -37859753 - L2 LINE L2 0 3272 3163 1122 148 38 51 chr11 112923845 112924082 -37859471 + L1MB3 LINE L1 5950 6183 0 1703 168 12 40 chr11 112924837 112925158 -37858395 + AluJb SINE Alu 1 312 0 183 129 0 0 chr11 112925856 112925887 -37857666 + (CA)n Simple_repeat Simple_repeat 2 32 0 576 309 202 25 chr11 112925897 112926478 -37857075 - L2 LINE L2 -192 3121 2422 2544 188 31 0 chr11 112926718 112927170 -37856383 - MER50 LTR ERV1 -16 718 253 2344 83 7 3 chr11 112927171 112927471 -37856082 - AluSc SINE Alu -8 301 1 279 320 17 93 chr11 112929250 112929374 -37854179 + MIR3 SINE MIR 32 141 -67 3151 154 24 62 chr11 112929374 112929648 -37853905 + L1MB4 LINE L1 5529 5812 -368 2476 85 0 0 chr11 112929648 112929953 -37853600 + AluY SINE Alu 1 305 -6 3151 154 24 62 chr11 112929953 112930353 -37853200 + L1MB4 LINE L1 5812 6177 -3 279 320 17 93 chr11 112930353 112930400 -37853153 + MIR3 SINE MIR 141 190 -18 507 169 0 0 chr11 112930409 112930486 -37853067 - FLAM SINE Alu -17 126 50 2216 109 37 0 chr11 112930573 112930894 -37852659 + MER1B DNA MER1_type 2 334 -5 598 272 61 57 chr11 112930949 112931195 -37852358 + Charlie8 DNA MER1_type 9 255 -2162 248 256 61 102 chr11 112931744 112932037 -37851516 - L1ME4a LINE L1 -129 5992 5712 458 246 14 14 chr11 112932047 112932189 -37851364 - L1ME4a LINE L1 -2338 5470 5329 358 305 25 17 chr11 112932825 112932943 -37850610 - L3 LINE CR1 -545 1032 914 203 325 12 0 chr11 112933075 112933155 -37850398 - L2 LINE L2 -7 3306 3226 1259 247 174 11 chr11 112933326 112933706 -37849847 - MER70B LTR ERVL -133 445 4 23 0 0 0 chr11 112933829 112933852 -37849701 + AT_rich Low_complexity Low_complexity 1 23 0 228 306 0 0 chr11 112934579 112934641 -37848912 + MIR SINE MIR 97 158 -104 3173 100 128 135 chr11 112934641 112935280 -37848273 - MER41A LTR ERV1 0 635 1 2225 124 9 3 chr11 112935293 112935616 -37847937 - MER57B LTR ERV1 -109 325 1 3870 130 110 11 chr11 112935943 112936590 -37846963 + MER50 LTR ERV1 1 711 -23 1192 216 5 73 chr11 112936794 112937179 -37846374 + L1MA9 LINE L1 5914 6272 -40 279 0 0 0 chr11 112937480 112937522 -37846031 + (CTTG)n Simple_repeat Simple_repeat 1 73 0 279 0 0 0 chr11 112937522 112937553 -37846000 + (CTTG)n Simple_repeat Simple_repeat 2 32 0 1716 118 75 0 chr11 112937581 112937836 -37845717 - AluSp SINE Alu -39 274 1 604 234 175 28 chr11 112937836 112938080 -37845473 - MER5C DNA MER1_type -40 284 1 436 127 0 0 chr11 112938105 112938168 -37845385 - MER90 LTR ERV1 0 614 552 2880 102 22 2 chr11 112938175 112938587 -37844966 + LTR8A LTR ERV1 10 429 -298 947 144 21 77 chr11 112938577 112938771 -37844782 + LTR8A LTR ERV1 530 712 -15 * 4459 141 11 21 chr11 112938807 112939020 -37844533 - MER50 LTR ERV1 -12 722 508 5690 75 0 19 chr11 112939020 112939139 -37844414 - LTR8 LTR ERV1 0 691 571 2470 81 3 0 chr11 112939139 112939449 -37844104 - AluSp SINE Alu -2 311 1 5690 75 0 19 chr11 112939449 112940033 -37843520 - LTR8 LTR ERV1 -120 571 1 4459 141 11 21 chr11 112940033 112940548 -37843005 - MER50 LTR ERV1 -226 508 1 1871 192 124 7 chr11 112940568 112941021 -37842532 - MER90 LTR ERV1 -69 506 1 874 233 50 0 chr11 112941108 112941288 -37842265 - MER5A DNA MER1_type 0 189 1 2348 93 0 3 chr11 112941383 112941684 -37841869 + AluSx SINE Alu 1 300 -12 337 194 28 28 chr11 112942747 112942819 -37840734 + MIR3 SINE MIR 119 190 -18 265 234 287 31 chr11 112942863 112943124 -37840429 + L3 LINE CR1 1037 1364 -213 2004 5 0 0 chr11 112944017 112944231 -37839322 - AluYa5 SINE Alu -2 309 96 496 211 156 0 chr11 112944741 112944850 -37838703 - FLAM_A SINE Alu -3 130 5 2786 175 120 23 chr11 112945027 112945594 -37837959 - LTR26E LTR ERV1 0 622 1 1117 186 132 61 chr11 112945927 112946335 -37837218 + LTR56 LTR ERV1 9 445 0 336 321 0 0 chr11 112947791 112947903 -37835650 + MER34-int LTR ERV1 4451 4562 -3864 225 0 0 0 chr11 112948209 112948234 -37835319 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 979 141 0 0 chr11 112948636 112948778 -37834775 + AluSq/x SINE Alu 1 142 -170 1776 152 18 0 chr11 112948781 112949057 -37834496 + AluSx SINE Alu 11 291 -21 1378 100 223 4 chr11 112949332 112949561 -37833992 + AluSx SINE Alu 1 279 -33 225 65 0 0 chr11 112949563 112949594 -37833959 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1687 162 55 10 chr11 112950651 112950941 -37832612 + AluJb SINE Alu 3 305 -7 410 143 0 0 chr11 112951905 112951961 -37831592 + FRAM SINE Alu 62 117 -59 346 271 7 60 chr11 112952133 112952284 -37831269 + MER34-int LTR ERV1 6124 6266 -65 3301 143 22 26 chr11 112952356 112952900 -37830653 + MER34 LTR ERV1 1 542 0 205 238 122 93 chr11 112953031 112953203 -37830350 - L2 LINE L2 0 3313 3137 2161 166 89 17 chr11 112953281 112953778 -37829775 + LTR36 LTR ERV1 1 611 0 251 273 22 79 chr11 112953779 112953918 -37829635 - L2 LINE L2 -214 3058 2928 339 268 107 48 chr11 112954232 112954400 -37829153 - MER115 DNA AcHobo -463 230 53 713 237 74 5 chr11 112954407 112954597 -37828956 - MER58C DNA MER1_type -2 213 11 288 300 140 19 chr11 112954628 112955045 -37828508 - L2 LINE L2 -567 2747 2224 313 326 37 7 chr11 112956503 112956638 -37826915 - MIR SINE MIR -56 206 68 369 222 33 0 chr11 112956676 112956766 -37826787 + MER94 DNA DNA 13 105 -29 1549 114 9 0 chr11 112956861 112957072 -37826481 + AluSg/x SINE Alu 85 297 -15 1020 279 90 56 chr11 112957073 112958024 -37825529 + L1M4 LINE L1 3621 4604 -1542 285 255 29 108 chr11 112958271 112958475 -37825078 + LTR67 LTR ERVL 357 544 -13 527 301 171 10 chr11 112958549 112958742 -37824811 - MER58A DNA MER1_type 0 224 1 245 244 96 30 chr11 112958762 112958897 -37824656 + L1M4 LINE L1 4693 4836 -1310 1749 176 31 0 chr11 112959033 112959323 -37824230 + AluJb SINE Alu 1 299 -13 1963 96 6 73 chr11 112959880 112960193 -37823360 - AluSx SINE Alu -18 294 3 231 239 45 15 chr11 112960268 112960335 -37823218 + MIR SINE MIR 122 190 -72 235 267 0 17 chr11 112960346 112960406 -37823147 + MLT1H1 LTR MaLR 4 62 -493 253 268 171 0 chr11 112960419 112960501 -37823052 - L2 LINE L2 -6 3307 3212 247 139 0 0 chr11 112960866 112960909 -37822644 - Alu SINE Alu -1 301 259 1010 155 26 7 chr11 112960909 112961064 -37822489 - AluSx SINE Alu -154 158 1 221 269 39 0 chr11 112961064 112961116 -37822437 - L2 LINE L2 -10 3303 3250 634 276 23 0 chr11 112962248 112962422 -37821131 + MLT1G LTR MaLR 1 178 -412 676 210 214 16 chr11 112962431 112962688 -37820865 + MLT1G LTR MaLR 280 587 -3 609 262 98 16 chr11 112962697 112962880 -37820673 - LTR16B LTR ERVL -2 462 265 2386 81 3 3 chr11 112963065 112963372 -37820181 + AluSp SINE Alu 2 308 -5 2044 111 3 36 chr11 112963454 112963760 -37819793 - AluSx SINE Alu -16 296 1 204 343 123 34 chr11 112963764 112963910 -37819643 + L2 LINE L2 3112 3270 -2 2186 116 0 26 chr11 112964664 112964974 -37818579 - AluSq SINE Alu -10 303 2 540 265 72 12 chr11 112965001 112965167 -37818386 - MLT1J LTR MaLR -314 197 22 233 149 15 90 chr11 112965898 112965965 -37817588 - MLT1B LTR MaLR -45 345 284 * 369 304 40 0 chr11 112965946 112966094 -37817459 + MLT1J LTR MaLR 322 475 -36 278 252 14 105 chr11 112966184 112966327 -37817226 - MLT1J LTR MaLR -378 133 4 1785 193 45 53 chr11 112966373 112966772 -37816781 - MSTD LTR MaLR 0 396 1 24 67 0 0 chr11 112967315 112967360 -37816193 + AT_rich Low_complexity Low_complexity 1 45 0 4183 187 42 9 chr11 112967442 112968559 -37814994 - L1MB3 LINE L1 -2 6181 5031 21485 68 5 7 chr11 112968564 112968805 -37814748 - L1PA8 LINE L1 -266 5906 5666 2168 111 3 0 chr11 112968805 112969102 -37814451 - AluSq SINE Alu -9 304 7 21485 68 5 7 chr11 112969102 112972432 -37811121 - L1PA8 LINE L1 -506 5666 2345 1890 91 70 0 chr11 112972629 112972915 -37810638 - L1PA13 LINE L1 -3 6160 5855 855 162 0 17 chr11 112973087 112973260 -37810293 - L1MA10 LINE L1 -2 6332 6163 306 71 0 0 chr11 112973316 112973358 -37810195 + L1P3 LINE L1 1376 1417 -5044 * 3879 158 42 22 chr11 112973355 112973424 -37810129 - L1M4c LINE L1 -5599 785 719 2608 38 0 13 chr11 112973424 112973738 -37809815 - AluY SINE Alu -1 310 1 3879 158 42 22 chr11 112973738 112974423 -37809130 - L1M4c LINE L1 -5665 719 16 199 326 23 68 chr11 112974725 112974857 -37808696 - L2 LINE L2 -176 3096 2971 269 0 0 53 chr11 112975266 112975304 -37808249 + (CAA)n Simple_repeat Simple_repeat 2 37 0 2027 176 32 64 chr11 112975844 112976239 -37807314 + MSTB2 LTR MaLR 1 380 -77 2135 145 0 0 chr11 112976239 112976536 -37807017 - AluSx SINE Alu -15 297 1 2027 176 32 64 chr11 112976536 112976612 -37806941 + MSTB2 LTR MaLR 380 457 0 246 254 0 0 chr11 112976990 112977053 -37806500 - HsTC2 DNA Tc2 -17 1881 1819 1491 138 0 0 chr11 112977167 112977384 -37806169 + AluSg/x SINE Alu 85 301 -11 304 380 13 0 chr11 112977467 112977617 -37805936 + L1MEd LINE L1 481 632 -5487 386 240 83 8 chr11 112978297 112978418 -37805135 + L1ME4a LINE L1 5978 6107 -14 313 279 19 29 chr11 112978500 112978604 -37804949 - HAL1 LINE L1 -93 2414 2312 1105 167 8 67 chr11 112978604 112978781 -37804772 - AluJb SINE Alu -5 307 121 1048 26 40 0 chr11 112978781 112978932 -37804621 + (TCTA)n Simple_repeat Simple_repeat 2 158 0 2149 123 0 0 chr11 112978938 112979230 -37804323 - AluSx SINE Alu -20 292 1 1105 167 8 67 chr11 112979230 112979284 -37804269 - AluJb SINE Alu -196 116 83 454 171 0 0 chr11 112979433 112979509 -37804044 - AluJb SINE Alu -236 76 1 533 273 92 63 chr11 112980269 112980533 -37803020 - HAL1 LINE L1 -585 1922 1667 1681 202 86 27 chr11 112980533 112980973 -37802580 - MLT1C LTR MaLR 0 467 2 533 273 92 63 chr11 112980973 112981322 -37802231 - HAL1 LINE L1 -840 1667 1245 1467 261 69 45 chr11 112981358 112981999 -37801554 - MLT2F LTR ERVL 0 663 8 339 299 33 51 chr11 112982005 112982213 -37801340 - HAL1 LINE L1 -1277 1230 1028 2027 121 3 0 chr11 112982213 112982524 -37801029 - AluSx SINE Alu 0 312 1 339 299 33 51 chr11 112982524 112982645 -37800908 - HAL1 LINE L1 -1479 1028 906 2286 153 84 2 chr11 112982705 112983123 -37800430 + LTR47A LTR ERVL 1 452 0 1986 160 3 0 chr11 112983834 112984127 -37799426 - AluSx SINE Alu -18 294 1 754 193 79 35 chr11 112984329 112984460 -37799093 + MER20 DNA MER1_type 1 146 -73 1740 204 0 0 chr11 112984460 112984759 -37798794 - AluJo SINE Alu -13 299 1 754 193 79 35 chr11 112984759 112984829 -37798724 + MER20 DNA MER1_type 146 211 -8 674 80 30 0 chr11 112984840 112984940 -37798613 + L1MB2 LINE L1 6069 6171 0 231 250 0 0 chr11 112985491 112985547 -37798006 - MLT1K LTR MaLR -531 57 2 224 313 139 0 chr11 112985638 112985753 -37797800 + MIR3 SINE MIR 78 208 0 2112 105 17 7 chr11 112986293 112986589 -37796964 + AluSq SINE Alu 1 299 -14 674 234 136 19 chr11 112987650 112987864 -37795689 + MIR SINE MIR 22 260 -2 1840 140 20 7 chr11 112987864 112988156 -37795397 - AluSx SINE Alu -16 296 1 298 356 5 9 chr11 112989140 112989257 -37794296 + MIR SINE MIR 17 138 -70 21 57 0 0 chr11 112990118 112990153 -37793400 + AT_rich Low_complexity Low_complexity 1 35 0 456 327 56 19 chr11 112990337 112990499 -37793054 + MIR SINE MIR 13 180 -82 23 0 0 0 chr11 112991201 112991224 -37792329 + AT_rich Low_complexity Low_complexity 1 23 0 616 276 43 16 chr11 112991226 112991411 -37792142 - MIR SINE MIR -46 216 27 279 243 0 27 chr11 112991435 112991509 -37792044 + MIR SINE MIR 175 246 -16 27 0 0 0 chr11 112991510 112991537 -37792016 + AT_rich Low_complexity Low_complexity 1 27 0 1956 95 68 34 chr11 112991835 112992131 -37791422 + AluSx SINE Alu 1 306 -6 188 182 23 0 chr11 112992797 112992841 -37790712 + (CATATA)n Simple_repeat Simple_repeat 5 49 0 29 0 0 0 chr11 112992876 112992905 -37790648 + AT_rich Low_complexity Low_complexity 1 29 0 2132 129 10 0 chr11 112992905 112993199 -37790354 - AluSx SINE Alu -15 297 1 722 178 44 0 chr11 112993377 112993512 -37790041 + Tigger3(Golem) DNA MER2_type 2 142 -2887 * 1491 171 4 0 chr11 112993509 112993766 -37789787 + Tigger3(Golem) DNA MER2_type 2772 3029 0 912 193 129 20 chr11 112993796 112993998 -37789555 - MER58A DNA MER1_type 0 224 1 23 0 0 0 chr11 112994025 112994048 -37789505 + AT_rich Low_complexity Low_complexity 1 23 0 389 286 62 76 chr11 112995085 112995295 -37788258 - MIR3 SINE MIR -1 207 1 720 261 84 10 chr11 112995503 112995706 -37787847 - MIR SINE MIR -10 252 35 261 256 26 0 chr11 112996173 112996251 -37787302 - MER116 DNA Mariner 0 80 1 280 307 68 43 chr11 112996609 112996772 -37786781 - MIR SINE MIR -64 198 32 404 373 25 10 chr11 112996899 112997100 -37786453 - MIR SINE MIR -47 215 12 23 54 0 0 chr11 112997725 112997762 -37785791 + AT_rich Low_complexity Low_complexity 1 37 0 194 238 143 16 chr11 112998765 112998828 -37784725 + L2 LINE L2 3243 3313 0 5602 144 41 32 chr11 112998903 112998978 -37784575 + L1MC1 LINE L1 5173 5246 -1087 2034 145 0 19 chr11 112998978 112999289 -37784264 + AluSx SINE Alu 1 305 -7 5602 144 41 32 chr11 112999289 113000209 -37783344 + L1MC1 LINE L1 5246 6174 -159 2239 120 0 0 chr11 113000209 113000517 -37783036 + AluSx SINE Alu 1 308 -4 5602 144 41 32 chr11 113000517 113000679 -37782874 + L1MC1 LINE L1 6174 6333 0 185 0 0 39 chr11 113001501 113001527 -37782026 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4251 171 18 29 chr11 113001819 113003007 -37780546 - L1MB4 LINE L1 -10 6170 5005 535 254 62 34 chr11 113003160 113003337 -37780216 + MIR SINE MIR 81 262 0 955 129 0 7 chr11 113005374 113005513 -37778040 + FLAM_C SINE Alu 1 138 -5 1089 139 21 0 chr11 113005534 113005728 -37777825 + L1PBa LINE L1 3 200 -6663 11967 123 110 5 chr11 113005730 113008474 -37775079 + L1PBa LINE L1 636 3658 -3204 25 31 0 0 chr11 113009022 113009054 -37774499 + AT_rich Low_complexity Low_complexity 1 32 0 789 200 70 60 chr11 113009128 113009343 -37774210 - MIR SINE MIR -38 224 8 276 319 50 35 chr11 113009481 113009622 -37773931 + L2 LINE L2 2772 2914 -400 2114 161 0 0 chr11 113009949 113010260 -37773293 - AluJo SINE Alu -1 311 1 409 296 101 52 chr11 113010266 113010553 -37773000 + MLT1K LTR MaLR 288 588 0 218 243 189 0 chr11 113010699 113010773 -37772780 - L2 LINE L2 -1 3271 3184 2235 121 0 0 chr11 113010781 113011087 -37772466 - AluSq SINE Alu -7 306 1 503 149 0 11 chr11 113011381 113011475 -37772078 + (TTCC)n Simple_repeat Simple_repeat 3 95 0 1344 198 63 15 chr11 113011478 113011746 -37771807 - AluJo SINE Alu -31 281 1 254 318 12 12 chr11 113011764 113011849 -37771704 - L2 LINE L2 -1 3271 3187 647 361 47 22 chr11 113011961 113012471 -37771082 - HERVL LTR ERVL -1241 4413 3891 607 151 0 103 chr11 113012752 113012898 -37770655 + MER34B LTR ERV1 1 131 -434 707 195 87 40 chr11 113012934 113013211 -37770342 + MER34B LTR ERV1 276 565 0 216 0 0 0 chr11 113013351 113013375 -37770178 + (T)n Simple_repeat Simple_repeat 1 24 0 255 279 167 54 chr11 113014064 113014192 -37769361 + MIR SINE MIR 2 114 -148 1823 220 93 35 chr11 113014192 113014509 -37769044 - MER119 DNA MER1_type -1 582 218 2170 113 27 0 chr11 113014509 113014801 -37768752 - AluSg SINE Alu -10 300 1 1823 220 93 35 chr11 113014801 113015032 -37768521 - MER119 DNA MER1_type -365 218 2 255 279 167 54 chr11 113015032 113015125 -37768428 + MIR SINE MIR 114 248 -14 293 325 0 0 chr11 113015148 113015228 -37768325 + GA-rich Low_complexity Low_complexity 3 82 0 408 88 0 0 chr11 113015368 113015425 -37768128 + (CA)n Simple_repeat Simple_repeat 2 58 0 335 215 168 65 chr11 113015639 113015853 -37767700 - Charlie8 DNA MER1_type -2139 278 43 348 188 0 0 chr11 113015860 113015929 -37767624 + (TA)n Simple_repeat Simple_repeat 1 69 0 296 286 11 0 chr11 113016008 113016099 -37767454 - MER97b DNA MER1_type? 0 1053 962 754 186 7 0 chr11 113016109 113016249 -37767304 + AluJo SINE Alu 1 141 -171 1790 225 54 6 chr11 113016740 113017224 -37766329 - MER97a DNA MER1_type? -289 605 99 225 338 14 0 chr11 113017228 113017299 -37766254 - MIR SINE MIR -95 113 42 513 271 56 7 chr11 113017391 113017573 -37765980 - MIR SINE MIR 0 262 70 193 303 67 22 chr11 113017748 113017837 -37765716 + MIR SINE MIR 28 120 -142 566 219 250 5 chr11 113019930 113020122 -37763431 + MIR SINE MIR 9 247 -15 1140 252 17 65 chr11 113020143 113020303 -37763250 + L1ME1 LINE L1 5516 5682 -488 1377 236 98 65 chr11 113020303 113020876 -37762677 - MLT1E LTR MaLR -1 592 1 1140 252 17 65 chr11 113020876 113021131 -37762422 + L1ME1 LINE L1 5682 5911 -259 2190 191 75 40 chr11 113021600 113022270 -37761283 + LTR48 LTR ERV1 3 644 0 244 138 154 0 chr11 113022539 113022604 -37760949 - MLT1H LTR MaLR 0 549 468 331 339 0 8 chr11 113022850 113022977 -37760576 - MLT1H LTR MaLR -419 130 5 1694 179 7 10 chr11 113023818 113024126 -37759427 + AluJo SINE Alu 3 309 -3 965 195 91 0 chr11 113024265 113024496 -37759057 + L1ME1 LINE L1 5909 6160 -6 285 278 67 0 chr11 113024630 113024720 -37758833 + LTR37B LTR ERV1 6 101 -367 1435 238 92 89 chr11 113024748 113025695 -37757858 + MER52A LTR ERV1 1 1751 -4 343 208 110 26 chr11 113025820 113025974 -37757579 - MER34 LTR ERV1 0 542 376 582 240 79 76 chr11 113026037 113026366 -37757187 - MER34C LTR ERV1 -221 364 35 289 203 16 0 chr11 113026360 113026424 -37757129 + LTR37B LTR ERV1 205 269 -199 * 235 202 83 24 chr11 113026431 113026515 -37757038 - MER34 LTR ERV1 -5 537 449 394 196 95 37 chr11 113026887 113027076 -37756477 + LTR37B LTR ERV1 269 468 0 310 325 19 48 chr11 113027501 113027550 -37756003 - L3b LINE CR1 -170 1413 1364 1609 148 47 47 chr11 113027550 113027888 -37755665 + MER44D DNA MER2_type 2 609 0 310 325 19 48 chr11 113027888 113028044 -37755509 - L3b LINE CR1 -219 1364 1214 708 188 28 7 chr11 113028238 113028382 -37755171 + MER5C DNA MER1_type 1 147 -177 433 304 0 33 chr11 113028431 113028615 -37754938 + CT-rich Low_complexity Low_complexity 3 180 0 26 0 0 0 chr11 113028686 113028712 -37754841 + AT_rich Low_complexity Low_complexity 1 26 0 2159 103 10 7 chr11 113029085 113029375 -37754178 + AluSx SINE Alu 1 291 -21 187 315 9 46 chr11 113029467 113029575 -37753978 + MIR SINE MIR 118 221 -41 211 239 0 0 chr11 113029969 113030015 -37753538 + T-rich Low_complexity Low_complexity 1 46 0 233 196 18 0 chr11 113031058 113031114 -37752439 + LTR37A LTR ERV1 111 167 -259 2416 75 0 3 chr11 113031134 113031442 -37752111 - AluY SINE Alu -4 307 1 462 230 108 12 chr11 113031542 113031753 -37751800 + LTR37A LTR ERV1 222 426 0 530 209 58 139 chr11 113031808 113032066 -37751487 + MER34 LTR ERV1 1 237 -305 722 153 48 0 chr11 113032068 113032192 -37751361 + LTR8 LTR ERV1 1 130 -561 1210 120 11 0 chr11 113032192 113032367 -37751186 - AluSq SINE Alu -3 310 134 2159 114 3 0 chr11 113032367 113032664 -37750889 - AluSx SINE Alu -14 298 1 1827 177 76 79 chr11 113032742 113033284 -37750269 + LTR8A LTR ERV1 188 727 0 703 214 51 37 chr11 113033289 113033561 -37749992 + MER39 LTR ERV1 430 565 0 286 243 9 45 chr11 113033958 113034069 -37749484 + MER31-int LTR ERV1 1029 1135 -3801 1864 106 68 57 chr11 113034467 113034834 -37748719 - THE1C LTR MaLR -4 371 1 9525 117 65 12 chr11 113034834 113036334 -37747219 - THE1C-int LTR MaLR 0 1580 1 1777 149 39 39 chr11 113036334 113036696 -37746857 - THE1C LTR MaLR 0 375 14 198 322 200 9 chr11 113036917 113037032 -37746521 + L2 LINE L2 3136 3272 0 474 76 0 0 chr11 113037138 113037204 -37746349 - THE1B LTR MaLR -40 324 259 226 291 0 0 chr11 113037599 113037678 -37745875 + L1M4 LINE L1 2745 2823 -3323 1654 283 124 30 chr11 113038271 113039250 -37744303 + L2 LINE L2 2228 3309 -4 1839 152 10 7 chr11 113041008 113041298 -37742255 - AluJb SINE Alu -21 291 1 599 302 47 30 chr11 113041542 113041774 -37741779 - MIR SINE MIR -6 256 21 3218 170 18 5 chr11 113041979 113042586 -37740967 - L1MB7 LINE L1 0 6184 5570 234 321 60 104 chr11 113044278 113044661 -37738892 + L2 LINE L2 2861 3226 -46 1896 169 24 0 chr11 113044811 113045101 -37738452 - AluJb SINE Alu -15 297 1 1639 96 0 0 chr11 113045208 113045428 -37738125 + AluSc SINE Alu 89 308 -1 237 70 53 18 chr11 113045431 113045488 -37738065 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 1987 145 13 10 chr11 113045967 113046278 -37737275 - AluJb SINE Alu 0 312 1 257 262 66 74 chr11 113047664 113047786 -37735767 + MIR SINE MIR 20 140 -122 356 59 20 0 chr11 113047814 113047865 -37735688 + (CA)n Simple_repeat Simple_repeat 2 53 0 427 314 54 59 chr11 113048270 113048509 -37735044 + MIR SINE MIR 12 249 -13 22 0 0 0 chr11 113048722 113048744 -37734809 + AT_rich Low_complexity Low_complexity 1 22 0 463 322 37 21 chr11 113049585 113049827 -37733726 + L2 LINE L2 2174 2419 -895 1016 160 55 0 chr11 113050003 113050184 -37733369 + MER7A DNA MER2_type 1 189 -157 11698 218 24 27 chr11 113050284 113052659 -37730894 - L1MEc LINE L1 -548 5862 3554 2376 71 0 14 chr11 113052659 113052956 -37730597 + AluY SINE Alu 1 293 -18 11698 218 24 27 chr11 113052956 113054607 -37728946 - L1MEc LINE L1 -2856 3554 1900 794 246 36 1 chr11 113054780 113055052 -37728501 - L1M4c LINE L1 -4574 1989 1554 375 376 51 31 chr11 113055052 113055492 -37728061 + L2 LINE L2 2630 3083 -189 431 278 191 5 chr11 113055609 113055818 -37727735 - MIR SINE MIR 0 262 15 180 286 41 0 chr11 113055847 113055896 -37727657 + L2 LINE L2 3215 3265 -7 515 305 40 66 chr11 113056920 113057192 -37726361 + MLT1J LTR MaLR 228 492 -19 355 300 44 22 chr11 113060163 113060344 -37723209 - MIR SINE MIR -64 144 16 1959 135 0 64 chr11 113061017 113061343 -37722210 - AluSx SINE Alu -3 309 5 416 278 63 8 chr11 113062105 113062231 -37721322 - L2 LINE L2 0 3313 3181 248 264 38 57 chr11 113062500 113062606 -37720947 + MIR SINE MIR 106 209 -53 200 239 141 11 chr11 113062752 113062844 -37720709 - MIR SINE MIR -122 140 37 971 237 14 0 chr11 113063576 113063791 -37719762 + MER20 DNA MER1_type 2 219 0 2311 98 3 3 chr11 113063883 113064188 -37719365 - AluSp SINE Alu -8 305 1 243 363 11 0 chr11 113064552 113064643 -37718910 + L2 LINE L2 3221 3312 -1 196 311 40 0 chr11 113064824 113064898 -37718655 + L2 LINE L2 3186 3262 -10 2223 111 3 22 chr11 113065124 113065439 -37718114 - AluSx SINE Alu -3 309 1 381 311 45 8 chr11 113065540 113065672 -37717881 + MIR SINE MIR 76 212 -50 201 267 87 77 chr11 113066445 113066597 -37716956 + L2 LINE L2 1684 1833 -1481 2015 120 13 19 chr11 113066597 113066906 -37716647 - AluSx SINE Alu -5 307 1 201 267 87 77 chr11 113066906 113067053 -37716500 + L2 LINE L2 1833 1986 -1328 304 314 0 0 chr11 113067162 113067248 -37716305 + MIR SINE MIR 177 262 0 183 343 62 48 chr11 113067310 113067456 -37716097 + L2 LINE L2 2129 2276 -1038 2600 41 0 22 chr11 113067743 113068059 -37715494 - AluY SINE Alu -2 309 1 586 262 158 0 chr11 113069202 113069385 -37714168 + MIR SINE MIR 9 220 -42 258 250 280 0 chr11 113069421 113069521 -37714032 - MIR SINE MIR -56 152 25 180 179 128 0 chr11 113070295 113070334 -37713219 - MIR SINE MIR 0 262 219 1237 211 34 104 chr11 113070766 113071150 -37712403 + MLT1A2 LTR MaLR 18 374 0 240 259 0 0 chr11 113071782 113071863 -37711690 + (TCCA)n Simple_repeat Simple_repeat 1 81 0 328 171 171 13 chr11 113071875 113071951 -37711602 - L2 LINE L2 -6 3266 3179 303 360 98 13 chr11 113071927 113072152 -37711401 + MIR SINE MIR 13 256 -6 * 893 235 63 17 chr11 113072567 113072805 -37710748 + MIR SINE MIR 14 262 0 251 304 88 0 chr11 113074167 113074269 -37709284 + MIR SINE MIR 72 182 -80 24 0 0 0 chr11 113076155 113076179 -37707374 + GC_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr11 113076548 113076569 -37706984 + AT_rich Low_complexity Low_complexity 1 21 0 2118 117 3 0 chr11 113077975 113078290 -37705263 + AluSx SINE Alu 1 316 0 2369 99 0 0 chr11 113078518 113078831 -37704722 - AluSq SINE Alu 0 313 1 390 246 51 51 chr11 113079125 113079243 -37704310 + L2 LINE L2 3155 3272 0 219 306 0 16 chr11 113079281 113079343 -37704210 - MER5A DNA MER1_type 0 189 129 258 296 36 24 chr11 113079837 113080031 -37703522 - MIR SINE MIR 0 262 3 1089 194 126 19 chr11 113080555 113080880 -37702673 + MER63B DNA MER1_type 1 360 -76 292 206 22 39 chr11 113080880 113081060 -37702493 + (TATAA)n Simple_repeat Simple_repeat 3 179 0 238 80 40 0 chr11 113081063 113081113 -37702440 + (TTTAA)n Simple_repeat Simple_repeat 5 56 0 478 172 86 0 chr11 113081114 113081207 -37702346 + MER63B DNA MER1_type 298 398 -38 290 279 0 0 chr11 113081207 113081275 -37702278 + MER63B DNA MER1_type 369 436 0 348 310 89 25 chr11 113081677 113081880 -37701673 - MER115 DNA AcHobo -358 335 120 329 308 39 10 chr11 113082085 113082189 -37701364 + L2 LINE L2 3102 3208 -64 296 226 69 29 chr11 113083014 113083116 -37700437 + L1ME4a LINE L1 5984 6089 -32 1953 170 6 31 chr11 113083717 113084070 -37699483 + MER2 DNA MER2_type 1 344 0 26 93 0 0 chr11 113084070 113084145 -37699408 + AT_rich Low_complexity Low_complexity 1 75 0 646 288 35 55 chr11 113084225 113084625 -37698928 + L1ME4a LINE L1 5711 6102 -19 491 116 74 25 chr11 113085317 113085438 -37698115 + MER96B DNA MER1_type? 67 193 -224 230 360 35 0 chr11 113085881 113085995 -37697558 + L2 LINE L2 3141 3258 -14 2721 119 186 45 chr11 113086605 113087143 -37696410 - LTR18B LTR ERVL 0 614 1 347 255 92 20 chr11 113087178 113087276 -37696277 + MIR SINE MIR 39 143 -65 390 288 134 27 chr11 113087361 113087653 -37695900 + L1ME4a LINE L1 5611 5933 -188 26 30 0 0 chr11 113087734 113087767 -37695786 + AT_rich Low_complexity Low_complexity 1 33 0 611 267 20 105 chr11 113088218 113088562 -37694991 + L2 LINE L2 2939 3253 -60 1776 141 22 38 chr11 113089035 113089355 -37694198 + MER1B DNA MER1_type 1 315 -24 226 192 39 0 chr11 113089386 113089438 -37694115 - MER58 DNA MER1_type 0 2420 2367 320 211 0 0 chr11 113089448 113089505 -37694048 - MER58 DNA MER1_type -88 253 197 239 273 23 34 chr11 113091890 113091978 -37691575 + MIR SINE MIR 72 158 -104 2074 117 84 36 chr11 113092240 113092598 -37690955 + THE1C LTR MaLR 1 375 0 583 224 118 7 chr11 113093652 113093804 -37689749 + L2 LINE L2 3145 3313 0 255 313 154 33 chr11 113093930 113094144 -37689409 - MIR SINE MIR -6 256 17 215 204 0 41 chr11 113094905 113094954 -37688599 + A-rich Low_complexity Low_complexity 4 50 0 213 121 0 0 chr11 113095202 113095235 -37688318 + (TA)n Simple_repeat Simple_repeat 1 33 0 209 330 170 0 chr11 113095287 113095393 -37688160 - L2 LINE L2 -1 3271 3148 227 359 13 31 chr11 113096867 113097026 -37686527 - L2 LINE L2 -552 2762 2607 241 287 78 17 chr11 113097581 113097696 -37685857 - L1MA9 LINE L1 -98 6214 6093 30 0 0 0 chr11 113097703 113097733 -37685820 + AT_rich Low_complexity Low_complexity 1 30 0 2224 83 0 10 chr11 113097733 113098021 -37685532 - AluSx SINE Alu -27 285 1 4097 185 19 43 chr11 113098021 113099386 -37684167 - L1MA9 LINE L1 -209 6103 4777 1877 171 0 19 chr11 113099386 113099695 -37683858 - AluJb SINE Alu -8 304 2 4097 185 19 43 chr11 113099695 113099925 -37683628 - L1MA9 LINE L1 -1535 4777 4543 2660 26 7 3 chr11 113100715 113101025 -37682528 + AluY SINE Alu 1 311 0 924 49 0 25 chr11 113101065 113101187 -37682366 - AluSp SINE Alu -194 119 1 2277 78 0 10 chr11 113101672 113101968 -37681585 - AluY SINE Alu -18 293 1 248 224 0 0 chr11 113101974 113102032 -37681521 + L1MA9 LINE L1 6217 6274 -38 239 297 64 89 chr11 113102591 113102793 -37680760 - L2 LINE L2 -1 3312 3116 2259 105 3 7 chr11 113103804 113104125 -37679428 + AluSq SINE Alu 1 313 0 1094 0 8 0 chr11 113104184 113104304 -37679249 + AluYa5/8 SINE Alu 1 121 -190 310 276 142 66 chr11 113104550 113104931 -37678622 + MLT1K LTR MaLR 155 564 -24 1913 238 62 89 chr11 113105296 113105343 -37678210 - L1MC4a LINE L1 0 7808 7761 2237 101 10 0 chr11 113105343 113105640 -37677913 + AluSc SINE Alu 4 303 -6 1913 238 62 89 chr11 113105640 113105783 -37677770 - L1MC4a LINE L1 -47 7761 7616 1786 208 96 8 chr11 113105783 113106263 -37677290 + Charlie1b DNA MER1_type 2 523 0 1913 238 62 89 chr11 113106263 113106467 -37677086 - L1MC4a LINE L1 -192 7616 7408 2155 98 31 0 chr11 113106467 113106753 -37676800 + AluSx SINE Alu 1 295 -17 1913 238 62 89 chr11 113106753 113107274 -37676279 - L1MC4a LINE L1 -400 7408 6916 472 195 160 0 chr11 113107918 113108087 -37675466 + Charlie1 DNA MER1_type 2491 2686 -75 958 241 23 5 chr11 113108092 113108337 -37675216 - L1MC4a LINE L1 -942 6866 6649 44 56 0 0 chr11 113108467 113108539 -37675014 + AT_rich Low_complexity Low_complexity 1 72 0 363 341 119 19 chr11 113108576 113109043 -37674510 + L2 LINE L2 2508 3035 -237 1057 251 30 24 chr11 113109379 113109575 -37673978 - LTR16A LTR ERVL 0 450 250 1974 142 96 9 chr11 113109575 113109920 -37673633 - THE1C LTR MaLR 0 375 1 1057 251 30 24 chr11 113109920 113110058 -37673495 - LTR16A LTR ERVL -200 250 114 21 0 0 0 chr11 113110744 113110765 -37672788 + AT_rich Low_complexity Low_complexity 1 21 0 682 249 40 0 chr11 113111308 113111485 -37672068 + MIR SINE MIR 78 261 -1 197 178 22 0 chr11 113111802 113111847 -37671706 + CT-rich Low_complexity Low_complexity 3 48 0 190 274 132 52 chr11 113112153 113112365 -37671188 - L2 LINE L2 -352 2962 2734 1822 105 16 4 chr11 113112734 113112991 -37670562 + AluSp SINE Alu 1 260 -53 227 307 59 10 chr11 113113107 113113208 -37670345 + L2 LINE L2 3203 3308 -5 252 357 48 8 chr11 113113209 113113335 -37670218 - L2 LINE L2 -6 3266 3136 203 405 0 0 chr11 113113555 113113644 -37669909 - L2 LINE L2 -453 2861 2773 1764 168 0 3 chr11 113113900 113114221 -37669332 - AluSx SINE Alu 0 320 1 247 358 71 67 chr11 113114530 113114798 -37668755 - L2 LINE L2 -197 3075 2807 2977 130 53 35 chr11 113115016 113115507 -37668046 + Tigger3b DNA MER2_type 2 501 -730 3712 105 52 46 chr11 113115507 113115601 -37667952 + Tigger3b DNA MER2_type 616 708 -2320 1766 149 24 14 chr11 113115601 113115890 -37667663 + AluJo SINE Alu 1 292 -20 3712 105 52 46 chr11 113115890 113116406 -37667147 + Tigger3b DNA MER2_type 708 1230 -1 643 233 73 53 chr11 113117314 113117520 -37666033 - MER63A DNA MER1_type 0 210 1 187 318 36 45 chr11 113117776 113117886 -37665667 + L3 LINE CR1 1459 1567 -10 614 161 89 30 chr11 113118732 113118900 -37664653 + MER53 DNA DNA 2 179 -10 473 87 29 0 chr11 113118989 113119058 -37664495 - L1MA6 LINE L1 -6 6294 6224 2001 150 0 7 chr11 113119597 113119904 -37663649 - AluJb SINE Alu -7 305 1 184 263 197 73 chr11 113120762 113120899 -37662654 - MER5A DNA MER1_type 0 189 36 646 203 159 12 chr11 113121512 113121763 -37661790 + MER63 DNA MER1_type 698 985 -76 243 194 33 50 chr11 113121763 113121943 -37661610 + (TATAA)n Simple_repeat Simple_repeat 3 179 0 238 80 40 0 chr11 113121946 113121996 -37661557 + (TTTAA)n Simple_repeat Simple_repeat 5 56 0 426 172 86 0 chr11 113121997 113122090 -37661463 + MER63 DNA MER1_type 922 1022 -38 238 294 0 0 chr11 113122090 113122158 -37661395 + MER63 DNA MER1_type 995 1062 0 307 310 89 25 chr11 113122560 113122763 -37660790 - MER115 DNA AcHobo -358 335 120 332 308 39 10 chr11 113122968 113123072 -37660481 + L2 LINE L2 3102 3208 -64 253 235 69 29 chr11 113123896 113123998 -37659555 + L1ME4a LINE L1 5984 6089 -32 1763 173 6 31 chr11 113124599 113124952 -37658601 + MER2 DNA MER2_type 1 344 0 26 93 0 0 chr11 113124952 113125027 -37658526 + AT_rich Low_complexity Low_complexity 1 75 0 301 309 24 24 chr11 113125107 113125233 -37658320 + L1ME LINE L1 5711 5836 -285 227 231 0 0 chr11 113125233 113125272 -37658281 - AluJ/monomer SINE Alu -260 39 1 459 128 64 0 chr11 113125272 113125366 -37658187 - Tigger3b DNA MER2_type -516 715 616 2720 130 53 35 chr11 113125366 113125857 -37657696 - Tigger3b DNA MER2_type -730 501 2 246 331 97 58 chr11 113125996 113126344 -37657209 + L2 LINE L2 2715 3075 -197 1812 167 0 3 chr11 113126653 113126941 -37656612 + AluSx SINE Alu 1 287 -25 213 65 0 0 chr11 113126941 113126972 -37656581 + (CATA)n Simple_repeat Simple_repeat 2 32 0 208 405 0 0 chr11 113127231 113127320 -37656233 + L2 LINE L2 2773 2861 -453 249 365 48 8 chr11 113127540 113127666 -37655887 + L2 LINE L2 3136 3266 -6 209 304 59 20 chr11 113127667 113127769 -37655784 - L2 LINE L2 -5 3308 3203 284 293 58 65 chr11 113127908 113128161 -37655392 - MIR3 SINE MIR -10 252 4 261 346 75 41 chr11 113129748 113130014 -37653539 + L2 LINE L2 2998 3272 0 189 282 87 6 chr11 113130744 113130859 -37652694 - MIR SINE MIR -50 212 84 2264 98 0 3 chr11 113131000 113131295 -37652258 - AluSx SINE Alu -18 294 1 362 300 106 24 chr11 113131772 113131942 -37651611 + MIR SINE MIR 79 262 0 280 318 0 0 chr11 113132350 113132438 -37651115 + GA-rich Low_complexity Low_complexity 3 90 0 728 256 35 10 chr11 113134307 113134596 -37648957 + L1M4 LINE L1 4906 5201 -945 760 202 0 0 chr11 113134598 113134727 -37648826 + FLAM_C SINE Alu 1 129 -14 21 0 0 0 chr11 113134727 113134748 -37648805 + AT_rich Low_complexity Low_complexity 1 21 0 2068 112 4 0 chr11 113134748 113135079 -37648474 + AluSc SINE Alu 3 334 0 2266 100 0 13 chr11 113135087 113135388 -37648165 + AluSg SINE Alu 1 297 -13 509 176 40 16 chr11 113135389 113135514 -37648039 + L1M4 LINE L1 5186 5313 -833 180 0 0 0 chr11 113136861 113136881 -37646672 + (T)n Simple_repeat Simple_repeat 1 20 0 1806 267 131 37 chr11 113138132 113138482 -37645071 - HAL1 LINE L1 -39 2468 2152 2326 111 0 0 chr11 113138482 113138789 -37644764 - AluSx SINE Alu -5 307 1 1806 267 131 37 chr11 113138789 113139601 -37643952 - HAL1 LINE L1 -355 2152 1197 310 232 84 21 chr11 113139618 113139713 -37643840 - HAL1 LINE L1 -1373 1134 1034 268 113 14 70 chr11 113139782 113139853 -37643700 + (TAAA)n Simple_repeat Simple_repeat 1 67 0 28 71 0 0 chr11 113139869 113139925 -37643628 + AT_rich Low_complexity Low_complexity 1 56 0 1581 174 4 33 chr11 113139939 113140215 -37643338 - AluJo SINE Alu -44 268 1 346 318 13 20 chr11 113140315 113140466 -37643087 - HAL1 LINE L1 -1611 896 747 872 247 89 35 chr11 113140497 113140866 -37642687 - MLT1J LTR MaLR 0 511 123 227 276 0 40 chr11 113140993 113141069 -37642484 - HAL1 LINE L1 -1792 715 643 692 323 41 21 chr11 113141318 113141656 -37641897 + LTR16C LTR ERVL 147 491 0 1684 169 26 0 chr11 113141696 113141999 -37641554 + AluJo SINE Alu 6 315 0 196 242 0 106 chr11 113142455 113142521 -37641032 + L2 LINE L2 3214 3272 0 1773 197 53 21 chr11 113143415 113143851 -37639702 - MLT1C LTR MaLR -12 455 6 729 167 0 0 chr11 113144592 113144706 -37638847 + FLAM_C SINE Alu 3 116 -27 23 33 0 0 chr11 113144913 113144943 -37638610 + AT_rich Low_complexity Low_complexity 1 30 0 808 211 12 0 chr11 113145874 113146040 -37637513 - L1ME1 LINE L1 -90 6076 5909 1687 168 10 10 chr11 113146179 113146488 -37637065 - AluJo SINE Alu -3 309 1 2194 124 0 0 chr11 113146537 113146835 -37636718 - AluSx SINE Alu -14 298 1 1970 148 14 0 chr11 113146838 113147128 -37636425 - AluSx SINE Alu -18 294 1 372 212 42 51 chr11 113147159 113147189 -37636364 + L1ME1 LINE L1 5362 5391 -773 2387 87 0 3 chr11 113147189 113147487 -37636066 - AluSc SINE Alu -11 298 2 372 212 42 51 chr11 113147487 113147574 -37635979 + L1ME1 LINE L1 5391 5478 -686 21 36 0 0 chr11 113147676 113147704 -37635849 + AT_rich Low_complexity Low_complexity 1 28 0 1740 130 0 4 chr11 113147725 113147972 -37635581 + AluSx SINE Alu 1 246 -66 2655 136 2 14 chr11 113147977 113148410 -37635143 - MER61E LTR ERV1 -133 436 9 2228 221 50 1 chr11 113148413 113148979 -37634574 + L1ME1 LINE L1 5573 6177 -1 400 313 107 43 chr11 113149711 113149944 -37633609 + MIR SINE MIR 15 262 0 716 147 0 0 chr11 113150632 113150741 -37632812 - MER72 LTR ERV1 -28 694 586 1925 158 30 16 chr11 113150986 113151354 -37632199 + THE1C LTR MaLR 3 375 0 220 305 0 17 chr11 113151820 113151879 -37631674 - L2 LINE L2 -2 3270 3213 686 237 50 15 chr11 113151881 113152079 -37631474 - L2 LINE L2 0 3313 3109 1333 280 202 4 chr11 113152412 113152927 -37630626 - L2 LINE L2 -567 2747 2131 1719 115 126 7 chr11 113153202 113153471 -37630082 + AluSx SINE Alu 1 301 -11 276 284 123 37 chr11 113154045 113154207 -37629346 - MIR SINE MIR -3 259 84 1905 123 3 59 chr11 113154802 113155126 -37628427 + AluSx SINE Alu 1 306 -6 2443 110 60 38 chr11 113156147 113156566 -37626987 + MSTA LTR MaLR 1 428 0 484 237 39 70 chr11 113156792 113156948 -37626605 - MER5A DNA MER1_type 0 189 39 658 189 209 0 chr11 113156990 113157143 -37626410 - MER5A DNA MER1_type -3 186 2 1776 92 0 4 chr11 113157673 113157902 -37625651 - AluSg/x SINE Alu -7 305 78 384 273 189 8 chr11 113158614 113158746 -37624807 - MER5A DNA MER1_type -1 188 33 1174 137 5 0 chr11 113159034 113159231 -37624322 + L1PBa LINE L1 3 200 -6663 12365 108 115 4 chr11 113159233 113161325 -37622228 + L1PBa LINE L1 636 2958 -3905 10156 217 36 48 chr11 113161322 113162484 -37621069 + L1PA15 LINE L1 1336 2510 -4287 * 1670 193 10 3 chr11 113162484 113162785 -37620768 + AluJb SINE Alu 1 303 -9 10156 217 36 48 chr11 113162785 113165548 -37618005 + L1PA15 LINE L1 2510 5261 -1536 5022 148 19 8 chr11 113165556 113166584 -37616969 + L1PA15 LINE L1 5772 6810 -6 2410 157 73 5 chr11 113166584 113167020 -37616533 + L1PB4 LINE L1 5675 6143 -13 21 0 0 0 chr11 113167020 113167041 -37616512 + AT_rich Low_complexity Low_complexity 1 21 0 858 238 60 8 chr11 113167041 113167276 -37616277 + L1MD2 LINE L1 5897 6143 -216 665 177 41 7 chr11 113167282 113167429 -37616124 + L1MD2 LINE L1 6207 6358 -1 906 162 0 0 chr11 113167591 113167770 -37615783 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 301 261 0 43 chr11 113167788 113167880 -37615673 + L1MC4 LINE L1 6614 6701 -1341 245 233 0 12 chr11 113167884 113167970 -37615583 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 343 291 55 0 chr11 113168571 113168681 -37614872 - L3 LINE CR1 -146 1431 1316 433 337 59 0 chr11 113168816 113168985 -37614568 + MIR SINE MIR 40 218 -44 358 357 35 14 chr11 113169521 113169664 -37613889 + L2 LINE L2 3163 3308 -5 883 197 64 36 chr11 113170793 113171042 -37612511 + MIR SINE MIR 7 262 0 475 345 30 20 chr11 113171037 113171092 -37612461 - MIR SINE MIR -15 247 194 * 4104 131 35 55 chr11 113171092 113171893 -37611660 - LTR1 LTR ERV1 0 785 1 475 345 30 20 chr11 113171893 113172034 -37611519 - MIR SINE MIR -68 194 49 28 0 0 0 chr11 113172100 113172128 -37611425 + AT_rich Low_complexity Low_complexity 1 28 0 2496 186 43 41 chr11 113173298 113173858 -37609695 + MER68 LTR ERV1 2 562 0 304 277 134 9 chr11 113174235 113174347 -37609206 - L3 LINE CR1 -7 1570 1445 1492 184 13 36 chr11 113174561 113174870 -37608683 + AluJo SINE Alu 1 302 -10 2510 68 0 0 chr11 113174876 113175185 -37608368 + AluY SINE Alu 1 309 -2 21 36 0 0 chr11 113175339 113175367 -37608186 + AT_rich Low_complexity Low_complexity 1 28 0 2433 70 0 10 chr11 113176443 113176755 -37606798 + AluY SINE Alu 1 309 -2 21 36 0 0 chr11 113176909 113176937 -37606616 + AT_rich Low_complexity Low_complexity 1 28 0 351 44 0 0 chr11 113177465 113177510 -37606043 + (CA)n Simple_repeat Simple_repeat 1 45 0 369 310 184 0 chr11 113177643 113177817 -37605736 + MIR SINE MIR 46 251 -11 429 263 58 15 chr11 113178364 113178501 -37605052 + MIR SINE MIR 120 262 0 258 235 223 28 chr11 113179008 113179259 -37604294 - HAL1 LINE L1 -147 2360 2061 1170 70 0 0 chr11 113179266 113179409 -37604144 - AluSp/q SINE Alu -2 311 169 666 253 247 6 chr11 113179640 113179859 -37603694 - HAL1 LINE L1 -620 1887 1722 234 0 0 0 chr11 113179859 113179885 -37603668 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 666 253 247 6 chr11 113179885 113180017 -37603536 - HAL1 LINE L1 -785 1722 1451 657 253 56 15 chr11 113180021 113180290 -37603263 - HAL1 LINE L1 -1115 1392 1113 769 272 105 62 chr11 113180317 113180850 -37602703 - LTR67 LTR ERVL 0 557 2 317 67 0 0 chr11 113181214 113181259 -37602294 + MADE1 DNA Mariner 35 79 -1 1335 242 75 53 chr11 113181319 113181811 -37601742 + MLT1D LTR MaLR 1 503 -2 226 206 79 16 chr11 113182667 113182730 -37600823 + MER91B DNA MER1_type 29 95 -95 978 136 7 0 chr11 113183523 113183663 -37599890 - AluSc SINE Alu -168 141 1 244 211 0 35 chr11 113184515 113184572 -37598981 - MER97c DNA MER1_type? -913 177 123 5356 164 41 22 chr11 113184968 113186747 -37596806 + L1PA15 LINE L1 4127 5933 -232 7355 30 6 1 chr11 113186749 113188280 -37595273 + L1PA4 LINE L1 4631 6180 0 328 353 53 0 chr11 113188579 113188712 -37594841 - MIR3 SINE MIR -30 178 39 198 0 0 0 chr11 113189950 113189972 -37593581 + (A)n Simple_repeat Simple_repeat 1 22 0 278 174 29 0 chr11 113190648 113190717 -37592836 + (CATTC)n Simple_repeat Simple_repeat 2 72 0 290 336 19 63 chr11 113191031 113191303 -37592250 - L1ME LINE L1 -281 5883 5624 2080 131 0 24 chr11 113191347 113191644 -37591909 + AluSx SINE Alu 1 290 -22 220 291 18 0 chr11 113192341 113192396 -37591157 - MIR3 SINE MIR -47 161 106 323 294 66 41 chr11 113192958 113193395 -37590158 - L1ME LINE L1 -1534 4612 4148 783 172 0 8 chr11 113193395 113193529 -37590024 - FLAM_C SINE Alu 0 133 1 323 294 66 41 chr11 113193529 113193614 -37589939 - L1ME LINE L1 -1998 4148 4067 302 274 8 48 chr11 113193669 113193793 -37589760 - L1ME LINE L1 -2532 3614 3496 1119 217 160 70 chr11 113193873 113194385 -37589168 - L1ME2 LINE L1 -10 6154 5597 613 215 72 46 chr11 113194401 113194673 -37588880 - L1ME2 LINE L1 -628 5534 5254 2379 197 44 6 chr11 113194673 113195150 -37588403 + LTR42 LTR ERVL 1 495 0 613 215 72 46 chr11 113195150 113195167 -37588386 - L1ME2 LINE L1 -908 5254 5239 4790 158 31 7 chr11 113195663 113196606 -37586947 + L1 LINE L1 4010 4974 -1172 * 10839 176 21 38 chr11 113196597 113199158 -37584395 - L1 LINE L1 -1253 6312 3795 * 40465 35 23 1 chr11 113199154 113205171 -37578382 - L1PA3 LINE L1 0 6155 1 10713 128 35 10 chr11 113205173 113207177 -37576376 - L1 LINE L1 -3757 3808 1756 2040 176 11 11 chr11 113207189 113207564 -37575989 - L1 LINE L1 -7176 389 15 1448 211 81 19 chr11 113207570 113208001 -37575552 + L1ME3A LINE L1 5709 6166 -4 1990 129 0 14 chr11 113208023 113208302 -37575251 - AluSx SINE Alu -37 275 1 448 313 0 0 chr11 113209183 113209314 -37574239 - MIR SINE MIR 0 262 132 1744 109 7 40 chr11 113210403 113210678 -37572875 - AluSx SINE Alu -9 303 38 875 204 26 16 chr11 113212206 113212397 -37571156 - AluJo SINE Alu -5 307 115 189 0 0 0 chr11 113212615 113212636 -37570917 + (A)n Simple_repeat Simple_repeat 1 21 0 278 174 29 0 chr11 113213246 113213315 -37570238 + (CATTC)n Simple_repeat Simple_repeat 2 72 0 290 335 25 63 chr11 113213604 113213903 -37569650 - L1ME LINE L1 -249 5915 5624 2080 131 0 24 chr11 113213947 113214244 -37569309 + AluSx SINE Alu 1 290 -22 220 291 18 0 chr11 113214939 113214994 -37568559 - MIR3 SINE MIR -47 161 106 412 316 76 0 chr11 113215564 113215735 -37567818 - MIR SINE MIR -71 191 8 397 349 48 43 chr11 113216114 113216535 -37567018 - L2 LINE L2 -339 2975 2553 927 233 15 0 chr11 113217090 113217292 -37566261 - MER58A DNA MER1_type -19 205 1 586 270 56 22 chr11 113218032 113218210 -37565343 + MIR SINE MIR 79 262 0 272 270 120 10 chr11 113218426 113218526 -37565027 + L2 LINE L2 3162 3272 0 406 143 91 0 chr11 113219404 113219481 -37564072 + MER57A LTR ERV1 11 94 -309 990 204 74 65 chr11 113219517 113219939 -37563614 - MSTB2 LTR MaLR 0 457 1 686 270 81 14 chr11 113219955 113220166 -37563387 + MIR SINE MIR 21 245 -17 580 317 45 12 chr11 113221624 113221867 -37561686 - MIR SINE MIR -1 261 11 276 286 16 0 chr11 113222408 113222471 -37561082 - L2 LINE L2 -3 3269 3206 213 269 0 0 chr11 113222548 113222600 -37560953 - L2 LINE L2 -215 3057 3006 213 221 147 21 chr11 113223580 113223675 -37559878 - L2 LINE L2 -239 3033 2927 480 308 54 22 chr11 113223829 113224014 -37559539 + MIR SINE MIR 16 206 -56 323 228 63 63 chr11 113224292 113224419 -37559134 - MIR SINE MIR -26 236 110 342 221 139 57 chr11 113224503 113224559 -37558994 + MER5B DNA MER1_type 7 57 -121 1691 159 75 38 chr11 113224559 113224905 -37558648 + MLT1A1 LTR MaLR 4 362 -3 342 221 139 57 chr11 113224905 113225006 -37558547 + MER5B DNA MER1_type 57 177 -1 212 401 29 22 chr11 113225407 113225544 -37558009 - L2 LINE L2 -611 2703 2566 2366 97 3 0 chr11 113225686 113225997 -37557556 + AluSp SINE Alu 1 312 -1 200 247 33 55 chr11 113227033 113227215 -37556338 + (CCCA)n Simple_repeat Simple_repeat 2 179 0 337 222 33 44 chr11 113227330 113227510 -37556043 + (CCCA)n Simple_repeat Simple_repeat 2 179 0 1897 232 55 29 chr11 113227834 113228326 -37555227 - MLT1D LTR MaLR 0 505 1 374 257 95 83 chr11 113228521 113228744 -37554809 - MIR3 SINE MIR -13 249 11 316 247 118 21 chr11 113228946 113229039 -37554514 + MIR SINE MIR 25 126 -82 * 512 282 35 23 chr11 113229028 113229202 -37554351 + MIR SINE MIR 44 219 -43 22 56 0 0 chr11 113229374 113229410 -37554143 + AT_rich Low_complexity Low_complexity 1 36 0 284 254 0 0 chr11 113229513 113229580 -37553973 - L1ME4a LINE L1 -94 6027 5961 465 312 127 38 chr11 113230153 113230776 -37552777 - L1ME4a LINE L1 -518 5648 4971 423 373 70 12 chr11 113230777 113231120 -37552433 - MLT1I LTR MaLR 0 409 47 422 314 78 38 chr11 113231275 113231924 -37551629 - L1ME4a LINE L1 -1316 4830 4148 836 172 0 8 chr11 113231924 113232058 -37551495 - FLAM_C SINE Alu 0 133 1 422 314 78 38 chr11 113232058 113232122 -37551431 - L1ME4a LINE L1 -1998 4148 4088 266 272 12 12 chr11 113233136 113233217 -37550336 + CT-rich Low_complexity Low_complexity 4 84 0 354 300 106 24 chr11 113233624 113233794 -37549759 - MIR SINE MIR 0 262 79 2214 101 0 7 chr11 113234271 113234568 -37548985 + AluSx SINE Alu 1 295 -17 185 237 0 0 chr11 113234707 113234745 -37548808 + MIR SINE MIR 85 122 -86 244 346 75 41 chr11 113235552 113235818 -37547735 - L2 LINE L2 0 3272 2998 260 291 58 66 chr11 113237403 113237657 -37545896 + MIR3 SINE MIR 4 252 -10 200 304 59 20 chr11 113237796 113237898 -37545655 + L2 LINE L2 3203 3308 -5 252 357 48 8 chr11 113237899 113238025 -37545528 - L2 LINE L2 -6 3266 3136 203 405 0 0 chr11 113238245 113238334 -37545219 - L2 LINE L2 -453 2861 2773 1861 146 11 0 chr11 113238591 113238907 -37544646 - AluY SINE Alu 0 319 1 230 345 62 69 chr11 113239801 113239946 -37543607 + MIR3 SINE MIR 26 169 -39 351 213 32 54 chr11 113240959 113241091 -37542462 + MLT1H1 LTR MaLR 261 370 -185 1649 110 0 0 chr11 113241528 113241746 -37541807 + AluSc SINE Alu 85 302 -7 25 31 0 0 chr11 113242946 113242978 -37540575 + GC_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr11 113242978 113242998 -37540555 + (A)n Simple_repeat Simple_repeat 1 20 0 539 315 34 30 chr11 113243292 113243575 -37539978 - L2 LINE L2 -285 3028 2745 1066 177 33 79 chr11 113244004 113244273 -37539280 + MER33 DNA MER1_type 34 314 -2271 522 57 0 0 chr11 113244273 113244343 -37539210 + (TCTCC)n Simple_repeat Simple_repeat 5 74 0 1681 171 19 0 chr11 113244347 113244616 -37538937 - AluJo SINE Alu -38 274 1 1066 177 33 79 chr11 113244616 113244646 -37538907 + MER33 DNA MER1_type 317 324 0 227 233 30 120 chr11 113244692 113244825 -37538728 - L2 LINE L2 -9 3304 3184 1649 110 0 0 chr11 113244935 113245153 -37538400 - AluSc SINE Alu -7 302 85 351 210 32 57 chr11 113245590 113245723 -37537830 - MLT1H1 LTR MaLR -185 370 261 230 345 62 69 chr11 113246736 113246881 -37536672 - MIR3 SINE MIR -39 169 26 2060 100 10 17 chr11 113247775 113248074 -37535479 + AluY SINE Alu 1 297 -14 1531 162 15 11 chr11 113248083 113248355 -37535198 + L1MA4 LINE L1 6028 6300 0 208 300 0 0 chr11 113248367 113248417 -37535136 - MIR3 SINE MIR -48 160 111 203 195 24 0 chr11 113248666 113248707 -37534846 + (CAT)n Simple_repeat Simple_repeat 1 42 0 2091 100 35 32 chr11 113249041 113249352 -37534201 + AluSx SINE Alu 1 312 0 1145 187 118 8 chr11 113249670 113249916 -37533637 + AluJo SINE Alu 21 293 -19 348 186 72 52 chr11 113250002 113250099 -37533454 - MIR3 SINE MIR -3 205 107 225 108 0 0 chr11 113250225 113250262 -37533291 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2356 90 0 3 chr11 113251011 113251312 -37532241 - AluY SINE Alu -11 300 1 2015 144 6 6 chr11 113251989 113252301 -37531252 + AluJb SINE Alu 1 312 0 1936 174 0 0 chr11 113252418 113252728 -37530825 + AluSx SINE Alu 1 310 -2 2472 132 20 3 chr11 113252846 113253202 -37530351 - THE1B LTR MaLR -1 363 2 1724 183 0 0 chr11 113253202 113253481 -37530072 - AluJb SINE Alu -33 279 1 424 277 23 15 chr11 113253890 113254020 -37529533 + L2 LINE L2 3182 3312 -1 293 238 45 33 chr11 113254353 113254475 -37529078 + HAL1b LINE L1 1244 1345 -3 388 262 230 8 chr11 113254517 113254643 -37528910 - L2 LINE L2 -5 3267 3114 1053 149 12 0 chr11 113254745 113254913 -37528640 - AluJo SINE Alu -8 304 135 789 204 0 15 chr11 113255887 113256019 -37527534 - AluJo SINE Alu -172 130 1 737 202 8 0 chr11 113256292 113256421 -37527132 + MER5A DNA MER1_type 1 130 -59 1870 156 42 0 chr11 113256622 113256911 -37526642 + AluJb SINE Alu 5 305 -7 234 191 0 0 chr11 113257135 113257182 -37526371 + GA-rich Low_complexity Low_complexity 2 48 0 250 325 60 0 chr11 113257572 113257655 -37525898 + L2 LINE L2 2889 2976 -296 203 261 91 45 chr11 113257737 113257825 -37525728 - L2 LINE L2 -5 3267 3176 759 245 173 11 chr11 113258523 113258801 -37524752 + MER5C DNA MER1_type 2 324 0 350 317 77 80 chr11 113258844 113259169 -37524384 + L2 LINE L2 2949 3272 0 213 128 64 0 chr11 113259627 113259703 -37523850 + (TCTG)n Simple_repeat Simple_repeat 1 80 0 941 188 150 5 chr11 113260128 113260341 -37523212 - MLT1E LTR MaLR -2 591 348 353 158 66 26 chr11 113260699 113260775 -37522778 + MER21B LTR ERV1 12 90 -773 237 274 60 12 chr11 113260797 113260881 -37522672 + MER21B LTR ERV1 19 106 -757 * 719 209 171 0 chr11 113260879 113261037 -37522516 + MER21B LTR ERV1 19 203 -660 * 963 272 73 16 chr11 113261035 113261348 -37522205 + MER21B LTR ERV1 482 812 -51 180 326 116 12 chr11 113261376 113261462 -37522091 + MIR SINE MIR 26 120 -142 655 267 75 51 chr11 113261977 113262348 -37521205 + L1MC4a LINE L1 5674 6053 -1755 1078 286 98 19 chr11 113263990 113264368 -37519185 + MLT1I LTR MaLR 1 408 -1 720 329 104 46 chr11 113264377 113264770 -37518783 + L2 LINE L2 2130 2499 -814 1642 179 43 10 chr11 113264770 113265072 -37518481 + AluJb SINE Alu 1 312 0 720 329 104 46 chr11 113265072 113265781 -37517772 + L2 LINE L2 2499 3293 -20 215 307 53 0 chr11 113266044 113266119 -37517434 + MIR3 SINE MIR 125 203 -5 477 281 121 9 chr11 113266867 113267091 -37516462 - MIR SINE MIR -12 250 2 243 0 0 0 chr11 113267691 113267718 -37515835 + (CA)n Simple_repeat Simple_repeat 2 28 0 252 86 0 0 chr11 113269030 113269065 -37514488 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 186 379 15 38 chr11 113269141 113269273 -37514280 + L2 LINE L2 2203 2331 -983 1034 297 55 11 chr11 113269930 113270623 -37512930 + L1M4 LINE L1 2826 3548 -2598 307 242 104 55 chr11 113270720 113270902 -37512651 - L1M4 LINE L1 -1465 4681 4491 21 0 0 0 chr11 113271431 113271452 -37512101 + AT_rich Low_complexity Low_complexity 1 21 0 233 189 19 19 chr11 113271752 113271805 -37511748 - L2 LINE L2 -74 3239 3187 21 0 0 0 chr11 113271910 113271931 -37511622 + AT_rich Low_complexity Low_complexity 1 21 0 900 119 45 0 chr11 113271941 113272075 -37511478 + L1PA13 LINE L1 6022 6161 -2 1457 141 153 4 chr11 113273176 113273431 -37510122 - AluSx SINE Alu -19 293 1 21 0 0 0 chr11 113273562 113273583 -37509970 + AT_rich Low_complexity Low_complexity 1 21 0 781 126 9 0 chr11 113273700 113273811 -37509742 - AluSg/x SINE Alu -29 283 172 1912 194 25 6 chr11 113274703 113275059 -37508494 + MLT1A1 LTR MaLR 3 365 0 5198 136 67 23 chr11 113277830 113277908 -37505645 + Tigger3b DNA MER2_type 1 74 -2954 2692 115 31 9 chr11 113277908 113278327 -37505226 + MSTA LTR MaLR 1 428 0 5198 136 67 23 chr11 113278327 113279294 -37504259 + Tigger3b DNA MER2_type 74 1092 -139 315 246 0 0 chr11 113279295 113279360 -37504193 + FRAM/FAM SINE Alu 1 65 -101 534 225 0 46 chr11 113279377 113279528 -37504025 + Tigger3b DNA MER2_type 1088 1231 0 183 226 75 19 chr11 113279551 113279604 -37503949 + MIR SINE MIR 124 179 -83 1171 81 0 6 chr11 113280252 113280426 -37503127 - L1P5 LINE L1 -411 5745 5573 2032 143 26 8 chr11 113280426 113280776 -37502777 + L1PB4 LINE L1 5795 6151 -5 2466 66 0 3 chr11 113280874 113281176 -37502377 - AluY SINE Alu -10 301 1 394 279 176 6 chr11 113282091 113282256 -37501297 - MIR SINE MIR -6 256 64 1026 269 129 61 chr11 113282517 113283122 -37500431 - ERVL LTR ERVL -3207 2557 1912 306 0 0 0 chr11 113283184 113283218 -37500335 + (TG)n Simple_repeat Simple_repeat 1 34 0 * 324 48 0 0 chr11 113283217 113283259 -37500294 + (GA)n Simple_repeat Simple_repeat 1 42 0 267 152 0 0 chr11 113283293 113283339 -37500214 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 183 80 0 0 chr11 113283427 113283452 -37500101 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 329 181 0 133 chr11 113283453 113283558 -37499995 + L1MC4 LINE L1 6612 6702 -1340 480 386 39 27 chr11 113283598 113284220 -37499333 - ERVL LTR ERVL -3600 1396 768 1571 193 3 37 chr11 113284535 113284582 -37498971 - AluJo SINE Alu -26 286 239 2142 148 114 8 chr11 113284582 113284967 -37498586 + MSTA LTR MaLR 1 426 -2 1571 193 3 37 chr11 113284967 113285215 -37498338 - AluJo SINE Alu -73 239 1 549 209 194 7 chr11 113287486 113287625 -37495928 + MER5B DNA MER1_type 13 177 -1 1106 202 155 36 chr11 113288723 113289001 -37494552 + MER63B DNA MER1_type 2 340 -722 2136 142 3 0 chr11 113289001 113289312 -37494241 - AluSx SINE Alu 0 312 1 1106 202 155 36 chr11 113289312 113289420 -37494133 + MER63B DNA MER1_type 340 434 -2 180 337 50 10 chr11 113289530 113289631 -37493922 - MIR SINE MIR -74 134 30 307 254 83 65 chr11 113289756 113289925 -37493628 + MIR3 SINE MIR 18 189 -19 277 328 38 37 chr11 113290695 113290893 -37492660 + MIR3 SINE MIR 6 206 -56 2277 121 0 0 chr11 113291836 113292142 -37491411 - AluSg SINE Alu -4 306 1 1690 190 0 13 chr11 113294615 113294737 -37488816 + AluJb SINE Alu 1 123 -189 189 0 0 0 chr11 113294737 113294758 -37488795 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1690 190 0 13 chr11 113294758 113294935 -37488618 + AluJb SINE Alu 123 296 -16 198 207 0 0 chr11 113295183 113295241 -37488312 + (TTCA)n Simple_repeat Simple_repeat 1 58 0 204 254 16 0 chr11 113297606 113297669 -37485884 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 1606 179 77 4 chr11 113297806 113298080 -37485473 - AluJo SINE Alu -18 294 1 1452 154 0 109 chr11 113298654 113298965 -37484588 - AluJo SINE Alu 0 312 36 1226 149 0 0 chr11 113299022 113299196 -37484357 - AluSg/x SINE Alu -5 305 132 373 293 30 73 chr11 113299257 113299421 -37484132 - MIR SINE MIR -47 215 59 180 315 108 57 chr11 113299947 113300372 -37483181 + L2 LINE L2 2038 2484 -830 * 745 236 104 14 chr11 113300279 113300499 -37483054 + MIR SINE MIR 23 262 0 3672 105 0 2 chr11 113300536 113301165 -37482388 + L1PB1 LINE L1 5168 5795 -356 240 75 60 53 chr11 113301165 113301298 -37482255 + (TA)n Simple_repeat Simple_repeat 2 135 0 2400 107 14 14 chr11 113301311 113301676 -37481877 + L1PB1 LINE L1 5786 6150 -1 2597 103 0 8 chr11 113304562 113304929 -37478624 + THE1B LTR MaLR 1 364 0 215 296 56 0 chr11 113307038 113307092 -37476461 - MIR SINE MIR -182 80 24 422 343 83 5 chr11 113307680 113307884 -37475669 + MIR SINE MIR 37 256 -6 256 314 29 0 chr11 113307888 113307958 -37475595 - MIR3 SINE MIR -21 187 116 250 200 33 33 chr11 113309069 113309129 -37474424 - L2 LINE L2 0 3272 3213 494 196 9 0 chr11 113309673 113309785 -37473768 + CT-rich Low_complexity Low_complexity 4 116 0 28769 106 10 18 chr11 113309786 113316273 -37467280 - L1PA7 LINE L1 -13 6456 8 229 219 0 31 chr11 113316755 113316819 -37466734 + CT-rich Low_complexity Low_complexity 2 63 0 334 357 27 11 chr11 113317193 113317378 -37466175 - L2 LINE L2 -345 2969 2782 614 316 94 57 chr11 113317395 113317746 -37465807 + L2 LINE L2 2909 3272 0 268 56 0 0 chr11 113317950 113317986 -37465567 - L1P3 LINE L1 -5346 1115 1080 466 84 53 53 chr11 113317993 113318088 -37465465 + THE1B LTR MaLR 163 257 -107 302 83 21 0 chr11 113318088 113318136 -37465417 - L1P3 LINE L1 -5388 1073 1025 201 132 0 0 chr11 113318371 113318409 -37465144 + (TA)n Simple_repeat Simple_repeat 2 39 0 2410 267 77 37 chr11 113318613 113319696 -37463857 + L2 LINE L2 2113 3245 -68 2235 114 54 20 chr11 113319696 113320048 -37463505 + THE1B LTR MaLR 1 364 0 2410 267 77 37 chr11 113320048 113320120 -37463433 + L2 LINE L2 3245 3313 0 2446 148 0 0 chr11 113321047 113321411 -37462142 - THE1B LTR MaLR 0 364 1 9838 102 46 41 chr11 113321411 113322672 -37460881 - THE1B-int LTR MaLR 0 1580 308 2269 99 10 0 chr11 113322672 113322966 -37460587 + AluY SINE Alu 1 297 -14 9838 102 46 41 chr11 113322966 113323276 -37460277 - THE1B-int LTR MaLR -1272 308 1 2519 135 0 0 chr11 113323276 113323640 -37459913 - THE1B LTR MaLR 0 364 1 577 282 96 5 chr11 113323676 113323864 -37459689 + MIR SINE MIR 8 212 -50 545 209 31 14 chr11 113324478 113324922 -37458631 + (TA)n Simple_repeat Simple_repeat 1 451 0 196 129 109 0 chr11 113324972 113325073 -37458480 + (TA)n Simple_repeat Simple_repeat 2 113 0 281 310 136 19 chr11 113326644 113326857 -37456696 + MLT1K LTR MaLR 345 582 -6 350 330 9 0 chr11 113326863 113326969 -37456584 + L2 LINE L2 1830 1936 -1378 245 183 24 79 chr11 113327128 113327292 -37456261 + T-rich Low_complexity Low_complexity 2 156 0 3157 132 58 42 chr11 113328461 113328857 -37454696 + MER6A DNA MER2_type 2 411 -454 2237 122 0 0 chr11 113328857 113329168 -37454385 - AluSx SINE Alu -1 311 1 3157 132 58 42 chr11 113329168 113329362 -37454191 + MER6A DNA MER2_type 411 601 -4 273 49 0 0 chr11 113329569 113329610 -37453943 - L1MA4A LINE L1 -2 6301 6261 229 264 33 33 chr11 113329973 113330064 -37453489 + L1MC/D LINE L1 5812 5902 -1906 571 316 57 45 chr11 113330348 113330788 -37452765 + L2 LINE L2 2160 2604 -710 383 367 13 19 chr11 113330924 113331082 -37452471 + L2 LINE L2 3116 3272 0 529 273 39 19 chr11 113332201 113332406 -37451147 - MIR SINE MIR -14 248 40 287 240 32 56 chr11 113334085 113334210 -37449343 - L2 LINE L2 -208 3064 2943 21 0 0 0 chr11 113337740 113337761 -37445792 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr11 113337875 113337913 -37445640 + AT_rich Low_complexity Low_complexity 1 38 0 219 88 0 0 chr11 113338265 113338299 -37445254 + (T)n Simple_repeat Simple_repeat 1 34 0 301 307 60 53 chr11 113339047 113339197 -37444356 + MIR3 SINE MIR 58 208 0 229 170 19 19 chr11 113340334 113340387 -37443166 + T-rich Low_complexity Low_complexity 3 55 0 271 303 115 33 chr11 113340784 113340906 -37442647 + L3 LINE CR1 1427 1558 -19 754 144 8 8 chr11 113340917 113341035 -37442518 - AluJb SINE Alu -194 118 1 432 301 29 15 chr11 113341565 113341701 -37441852 + L2 LINE L2 3174 3311 -2 263 209 30 15 chr11 113342069 113342136 -37441417 + GA-rich Low_complexity Low_complexity 3 70 0 336 115 26 26 chr11 113342631 113342709 -37440844 + GA-rich Low_complexity Low_complexity 4 81 0 189 74 0 0 chr11 113342709 113342736 -37440817 + (CCGG)n Simple_repeat Simple_repeat 2 28 0 249 57 0 0 chr11 113342746 113342781 -37440772 + (CACG)n Simple_repeat Simple_repeat 1 35 0 1630 178 41 7 chr11 113342848 113343141 -37440412 + AluJo SINE Alu 1 303 -9 228 139 0 0 chr11 113343256 113343292 -37440261 + U2 snRNA snRNA 1 36 -152 2271 118 30 28 chr11 113343521 113343884 -37439669 + THE1B LTR MaLR 1 364 0 259 188 80 58 chr11 113343926 113344064 -37439489 - L1ME4a LINE L1 -14 6107 5967 548 237 0 0 chr11 113344199 113344296 -37439257 - AluJ/FLAM SINE Alu -210 102 6 5726 114 14 2 chr11 113344301 113345168 -37438385 - L1MA3 LINE L1 -48 6257 5381 183 385 74 20 chr11 113346270 113346418 -37437135 - L2 LINE L2 -575 2739 2584 2724 151 66 39 chr11 113346601 113347145 -37436408 - MER89 LTR ERV1 0 559 1 246 222 0 74 chr11 113347683 113347764 -37435789 + L1MC4 LINE L1 6629 6703 -1339 210 179 30 15 chr11 113347897 113347964 -37435589 + (TA)n Simple_repeat Simple_repeat 1 68 0 2057 125 0 4 chr11 113348003 113348310 -37435243 - AluSx SINE Alu 0 310 5 221 221 15 0 chr11 113348313 113348381 -37435172 + (TA)n Simple_repeat Simple_repeat 1 69 0 417 322 129 6 chr11 113348405 113348576 -37434977 - MIR SINE MIR -6 256 65 414 317 42 18 chr11 113349400 113349567 -37433986 + MIR SINE MIR 11 181 -81 332 267 233 0 chr11 113349896 113350016 -37433537 - MIR SINE MIR -66 196 49 1853 99 4 0 chr11 113350845 113351087 -37432466 + AluSc SINE Alu 56 298 -11 542 229 76 25 chr11 113351405 113351562 -37431991 + L1M4 LINE L1 5 169 -6373 1081 246 24 24 chr11 113351574 113351862 -37431691 + L1M4 LINE L1 233 520 -6022 373 218 46 11 chr11 113351952 113352039 -37431514 + L1ME LINE L1 5707 5796 -366 247 304 20 20 chr11 113352440 113352558 -37430995 - MIR SINE MIR -42 166 49 2276 226 78 44 chr11 113352585 113352623 -37430930 - L1MEc LINE L1 -3726 2489 2454 601 251 62 22 chr11 113352623 113352802 -37430751 - MER5A DNA MER1_type 0 189 4 2276 226 78 44 chr11 113352802 113353742 -37429811 - L1MEc LINE L1 -3761 2454 1543 29 96 0 0 chr11 113353799 113353872 -37429681 + AT_rich Low_complexity Low_complexity 1 73 0 239 113 19 0 chr11 113353924 113353977 -37429576 + (TA)n Simple_repeat Simple_repeat 2 55 0 1499 160 57 0 chr11 113353978 113354222 -37429331 - AluJo SINE Alu -29 283 26 357 311 71 33 chr11 113354222 113354434 -37429119 - L1MEc LINE L1 -5679 717 498 1043 301 25 17 chr11 113354454 113354860 -37428693 - L1MEc LINE L1 -5951 445 37 473 220 162 0 chr11 113356284 113356457 -37427096 - LTR37A LTR ERV1 0 426 226 647 239 78 70 chr11 113356952 113357195 -37426358 + MIR SINE MIR 12 256 -6 2086 120 0 7 chr11 113357551 113357850 -37425703 + AluSx SINE Alu 3 299 -13 239 261 134 34 chr11 113358160 113358279 -37425274 - MIR SINE MIR -52 210 80 562 189 8 76 chr11 113359179 113359311 -37424242 + FLAM_C SINE Alu 9 131 -12 267 296 74 15 chr11 113362542 113362677 -37420876 + MIR SINE MIR 22 164 -98 275 197 0 45 chr11 113363610 113363676 -37419877 + MIR SINE MIR 126 188 -74 728 221 96 5 chr11 113364065 113364264 -37419289 - MER20 DNA MER1_type -2 217 1 289 250 69 69 chr11 113365006 113365122 -37418431 - MIR3 SINE MIR -50 158 43 2037 105 3 27 chr11 113365498 113365794 -37417759 + AluSx SINE Alu 1 289 -23 195 100 0 0 chr11 113365797 113365827 -37417726 + (CAA)n Simple_repeat Simple_repeat 2 31 0 238 298 168 50 chr11 113365915 113366076 -37417477 + MIR3 SINE MIR 14 193 -15 1189 191 114 4 chr11 113366863 113367109 -37416444 + AluJo SINE Alu 21 293 -19 358 186 72 52 chr11 113367195 113367292 -37416261 - MIR3 SINE MIR -3 205 107 225 108 0 0 chr11 113367418 113367455 -37416098 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2334 90 0 3 chr11 113368208 113368509 -37415044 - AluY SINE Alu -11 300 1 2029 154 0 0 chr11 113369186 113369498 -37414055 + AluJb SINE Alu 1 312 0 1904 171 0 0 chr11 113369615 113369925 -37413628 + AluJo SINE Alu 1 310 -2 813 134 8 15 chr11 113370133 113370267 -37413286 + FLAM_C SINE Alu 1 133 0 231 36 0 0 chr11 113370605 113370633 -37412920 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 529 218 137 47 chr11 113372293 113372504 -37411049 + MER106A DNA MER1_type 7 236 0 386 248 304 0 chr11 113372562 113372723 -37410830 - MIR SINE MIR -51 211 2 783 130 9 0 chr11 113373245 113373360 -37410193 + FLAM_A SINE Alu 10 125 -17 305 281 98 0 chr11 113373462 113373544 -37410009 + MIR3 SINE MIR 90 179 -29 514 312 59 10 chr11 113374093 113374295 -37409258 - MIR SINE MIR -10 252 41 308 237 92 0 chr11 113374762 113374838 -37408715 - L2 LINE L2 0 3272 3190 837 173 58 0 chr11 113374998 113375137 -37408416 - FRAM SINE Alu -18 158 12 2179 100 7 10 chr11 113375162 113375451 -37408102 - AluSx SINE Alu -24 288 1 1107 205 120 27 chr11 113376073 113376331 -37407222 + AluJo SINE Alu 1 282 -30 204 100 17 50 chr11 113376526 113376586 -37406967 + (TTAAA)n Simple_repeat Simple_repeat 3 60 0 249 203 0 0 chr11 113376903 113376962 -37406591 + A-rich Low_complexity Low_complexity 1 59 0 214 191 0 0 chr11 113377072 113377114 -37406439 + (TTA)n Simple_repeat Simple_repeat 3 44 0 2391 106 0 0 chr11 113377382 113377685 -37405868 - AluSx SINE Alu -9 303 1 553 203 0 16 chr11 113377697 113377825 -37405728 - MER33 DNA MER1_type -173 151 26 2156 119 3 22 chr11 113378160 113378478 -37405075 - AluSx SINE Alu 0 312 1 187 309 118 0 chr11 113378625 113378693 -37404860 + MIR SINE MIR 82 157 -105 * 756 235 134 0 chr11 113378686 113378903 -37404650 - MIR SINE MIR 0 262 17 283 226 0 0 chr11 113378911 113378964 -37404589 + L2 LINE L2 3201 3253 -19 261 0 0 0 chr11 113381665 113381694 -37401859 + (CA)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr11 113381693 113381713 -37401840 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 724 153 8 8 chr11 113382697 113382815 -37400738 + FLAM_C SINE Alu 1 118 -15 30 0 0 0 chr11 113382815 113382845 -37400708 + AT_rich Low_complexity Low_complexity 1 30 0 202 206 0 0 chr11 113383052 113383086 -37400467 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 288 77 0 0 chr11 113383213 113383252 -37400301 + (CA)n Simple_repeat Simple_repeat 2 40 0 2118 135 0 7 chr11 113384125 113384429 -37399124 - AluSx SINE Alu -10 302 1 1602 191 20 13 chr11 113385008 113385136 -37398417 + AluJo SINE Alu 3 129 -183 2005 123 0 0 chr11 113385136 113385405 -37398148 + AluSx SINE Alu 37 305 -7 1602 191 20 13 chr11 113385405 113385580 -37397973 + AluJo SINE Alu 129 308 -4 1041 187 0 0 chr11 113385693 113385875 -37397678 + AluJb SINE Alu 129 310 -2 1714 150 54 4 chr11 113386765 113387045 -37396508 + AluJb SINE Alu 1 294 -18 6524 41 4 1 chr11 113387482 113388530 -37395023 - L1P2 LINE L1 -571 5584 4535 5314 20 0 8 chr11 113388530 113389189 -37394364 + L1P2 LINE L1 3851 4504 -1642 258 328 84 53 chr11 113389315 113389446 -37394107 - MIR3 SINE MIR -36 172 38 354 195 0 0 chr11 113390374 113390451 -37393102 + GA-rich Low_complexity Low_complexity 4 80 0 216 0 0 0 chr11 113391464 113391488 -37392065 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 255 167 0 50 chr11 113391839 113391899 -37391654 + FLAM SINE Alu 73 124 -9 203 227 15 15 chr11 113392129 113392195 -37391358 + T-rich Low_complexity Low_complexity 1 66 0 1862 158 0 0 chr11 113392443 113392759 -37390794 + AluSx SINE Alu 5 320 0 21 71 0 0 chr11 113394088 113394130 -37389423 + AT_rich Low_complexity Low_complexity 1 42 0 484 281 68 26 chr11 113394324 113394516 -37389037 + MIR SINE MIR 48 247 -15 1034 141 16 5 chr11 113394831 113395016 -37388537 + LTR62 LTR ERVK 1 187 -532 1687 10 0 0 chr11 113395028 113395230 -37388323 + L1HS LINE L1 5953 6154 -1 2310 189 79 8 chr11 113395251 113395744 -37387809 + LTR62 LTR ERVK 189 716 -3 378 0 0 0 chr11 113396528 113396570 -37386983 + (TG)n Simple_repeat Simple_repeat 1 42 0 8095 91 13 7 chr11 113396882 113398105 -37385448 - L1PA7 LINE L1 -1725 4421 3192 6826 71 1 1 chr11 113398106 113399831 -37383722 + L1PA7 LINE L1 4424 6151 -3 268 247 10 52 chr11 113400176 113400273 -37383280 - MIR SINE MIR -59 203 111 1791 198 52 34 chr11 113400559 113401035 -37382518 - MER34B LTR ERV1 -72 493 9 419 35 0 17 chr11 113401265 113401323 -37382230 + (CTA)n Simple_repeat Simple_repeat 3 59 0 2104 128 3 0 chr11 113401375 113401664 -37381889 + AluSx SINE Alu 1 290 -22 1817 123 80 4 chr11 113401876 113402152 -37381401 + AluSx SINE Alu 6 302 -10 24 0 0 0 chr11 113402325 113402349 -37381204 + AT_rich Low_complexity Low_complexity 1 24 0 2341 71 3 23 chr11 113403417 113403726 -37379827 - AluY SINE Alu -8 303 1 456 139 13 0 chr11 113403863 113403942 -37379611 - MER116 DNA Mariner 0 80 1 245 328 102 0 chr11 113403980 113404108 -37379445 - MIR SINE MIR -30 232 92 29 0 0 0 chr11 113404781 113404810 -37378743 + AT_rich Low_complexity Low_complexity 1 29 0 1983 146 125 28 chr11 113405653 113406078 -37377475 - MLT1C LTR MaLR 0 467 2 1350 140 0 0 chr11 113406251 113406437 -37377116 + AluSx SINE Alu 1 186 -126 1917 182 68 31 chr11 113407034 113407491 -37376062 - L1MB5 LINE L1 0 6174 5701 1765 151 39 16 chr11 113407790 113408095 -37375458 - AluJb SINE Alu 0 312 1 193 328 140 6 chr11 113408116 113408287 -37375266 + L2 LINE L2 2709 2902 -412 181 328 216 9 chr11 113410574 113410690 -37372863 - L2 LINE L2 -12 3260 3121 238 325 13 53 chr11 113410710 113410861 -37372692 - L2 LINE L2 -581 2733 2589 193 343 95 9 chr11 113410869 113410974 -37372579 - L2 LINE L2 -1735 1579 1466 919 269 90 23 chr11 113411437 113411738 -37371815 - L2 LINE L2 -1 3312 2992 205 225 54 99 chr11 113411841 113411952 -37371601 + L2 LINE L2 2799 2904 -410 391 328 97 51 chr11 113411977 113412212 -37371341 + L2 LINE L2 2614 2837 -435 1804 144 174 11 chr11 113412212 113412579 -37370974 + MSTA LTR MaLR 1 427 -1 391 328 97 51 chr11 113412579 113412905 -37370648 + L2 LINE L2 2837 3209 -63 278 333 82 18 chr11 113413578 113413749 -37369804 + MIR SINE MIR 24 205 -57 490 275 120 0 chr11 113414613 113414755 -37368798 - MIR SINE MIR -7 255 97 345 269 255 14 chr11 113414885 113415030 -37368523 + MIR3 SINE MIR 17 196 -12 402 21 0 0 chr11 113415644 113415691 -37367862 + (TG)n Simple_repeat Simple_repeat 1 47 0 216 0 0 0 chr11 113415690 113415714 -37367839 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 216 333 240 21 chr11 113416277 113416469 -37367084 - MIR SINE MIR -7 255 22 1354 285 60 26 chr11 113416683 113417431 -37366122 + L2 LINE L2 2528 3308 -5 186 43 0 0 chr11 113418109 113418132 -37365421 + (GA)n Simple_repeat Simple_repeat 2 24 0 2322 59 3 3 chr11 113418379 113418668 -37364885 - AluY SINE Alu -22 289 1 285 370 35 6 chr11 113418729 113418902 -37364651 + L3 LINE CR1 243 420 -1157 214 380 62 23 chr11 113419030 113419159 -37364394 + L2 LINE L2 3139 3272 0 494 350 89 0 chr11 113419285 113419576 -37363977 + L3 LINE CR1 579 895 -682 371 186 97 48 chr11 113419601 113419635 -37363918 + Charlie4 DNA MER1_type 1818 1849 -112 2385 138 15 75 chr11 113419635 113420090 -37363463 + MSTC LTR MaLR 1 428 0 371 186 97 48 chr11 113420090 113420179 -37363374 + Charlie4 DNA MER1_type 1849 1947 -14 189 0 0 0 chr11 113420210 113420231 -37363322 + (A)n Simple_repeat Simple_repeat 1 21 0 3545 198 63 13 chr11 113420231 113421174 -37362379 - L1MB7 LINE L1 -5 6179 5191 279 314 77 65 chr11 113421259 113421428 -37362125 + L3 LINE CR1 1041 1211 -366 354 389 40 11 chr11 113421619 113421794 -37361759 + L3 LINE CR1 1389 1568 -9 1252 246 27 64 chr11 113422007 113422345 -37361208 - L1MC4a LINE L1 -1879 5929 5621 6196 90 13 14 chr11 113422345 113422936 -37360617 + L1PA13 LINE L1 4736 5326 -837 2127 124 3 7 chr11 113422936 113423235 -37360318 - AluSc SINE Alu -11 298 1 6196 90 13 14 chr11 113423235 113424050 -37359503 + L1PA13 LINE L1 5326 6162 -1 1252 246 27 64 chr11 113424050 113424304 -37359249 - L1MC4a LINE L1 -2187 5621 5359 1632 195 23 23 chr11 113424329 113424636 -37358917 + AluJo SINE Alu 1 307 -5 307 325 99 48 chr11 113424653 113425025 -37358528 - L1MC4a LINE L1 -831 5315 4925 2212 106 20 0 chr11 113425051 113425354 -37358199 - AluSx SINE Alu -3 309 1 227 271 14 29 chr11 113425495 113425565 -37357988 - MIR SINE MIR 0 262 194 457 283 134 16 chr11 113426068 113426255 -37357298 + L2 LINE L2 3105 3313 0 497 270 49 12 chr11 113426267 113426430 -37357123 + MIR SINE MIR 33 201 -61 390 364 89 19 chr11 113427692 113428008 -37355545 + L2 LINE L2 2247 2584 -730 437 133 32 28 chr11 113428016 113428142 -37355411 - MSTA LTR MaLR 0 428 302 6414 193 13 2 chr11 113428158 113429329 -37354224 - MSTB-int LTR MaLR -467 1184 1 2251 165 28 24 chr11 113429329 113429753 -37353800 - MSTB LTR MaLR 0 426 1 549 355 62 17 chr11 113429754 113430233 -37353320 + L2 LINE L2 2589 3084 -188 1449 232 0 0 chr11 113430422 113430689 -37352864 + Tigger7 DNA MER2_type 1 267 -2220 515 214 0 10 chr11 113430687 113430785 -37352768 + Tigger7 DNA MER2_type 2393 2489 -2 * 208 321 72 110 chr11 113430787 113430879 -37352674 + L2 LINE L2 2613 2707 -607 2124 136 0 7 chr11 113430879 113431188 -37352365 - AluSx SINE Alu -5 307 1 208 321 72 110 chr11 113431188 113431413 -37352140 + L2 LINE L2 2707 2918 -396 24 0 0 0 chr11 113432106 113432130 -37351423 + AT_rich Low_complexity Low_complexity 1 24 0 182 314 267 0 chr11 113432780 113432885 -37350668 - L2 LINE L2 -1 3271 3139 261 298 37 65 chr11 113433915 113434068 -37349485 + MIR SINE MIR 43 191 -71 520 113 0 0 chr11 113434130 113434210 -37349343 - MADE1 DNA Mariner 0 80 1 1588 132 35 0 chr11 113434319 113434576 -37348977 - L1PB4 LINE L1 -3 6153 5888 334 377 0 0 chr11 113435363 113435485 -37348068 + MIR3 SINE MIR 34 155 -53 3451 260 110 31 chr11 113435572 113436812 -37346741 - L2 LINE L2 -19 3294 1870 1918 148 0 35 chr11 113436812 113437122 -37346431 - AluSx SINE Alu -13 299 1 3451 260 110 31 chr11 113437122 113437312 -37346241 - L2 LINE L2 -1443 1870 1697 2995 25 3 3 chr11 113437312 113437670 -37345883 - L1PA3 LINE L1 -2 6153 5796 648 303 35 0 chr11 113438096 113438294 -37345259 - MIR SINE MIR -6 256 52 855 135 30 8 chr11 113439149 113439282 -37344271 - AluJo SINE Alu -174 138 3 303 71 0 0 chr11 113439321 113439363 -37344190 + (TCCA)n Simple_repeat Simple_repeat 2 43 0 232 383 0 21 chr11 113439371 113439465 -37344088 - L2 LINE L2 -31 3241 3150 244 328 121 11 chr11 113439561 113439735 -37343818 + L2 LINE L2 2844 3036 -236 204 188 0 0 chr11 113440021 113440053 -37343500 + (CA)n Simple_repeat Simple_repeat 2 33 0 369 219 0 24 chr11 113440067 113440190 -37343363 + (TA)n Simple_repeat Simple_repeat 2 121 0 307 291 23 0 chr11 113440207 113440293 -37343260 + L1MC4 LINE L1 6615 6702 -1340 276 253 23 0 chr11 113440309 113440396 -37343157 - L1MC4 LINE L1 -1340 6702 6614 236 197 0 16 chr11 113440398 113440459 -37343094 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 218 189 0 0 chr11 113440474 113440511 -37343042 + (TATG)n Simple_repeat Simple_repeat 2 38 0 258 194 21 54 chr11 113440511 113440604 -37342949 - L1MC4 LINE L1 -1339 6703 6614 180 111 0 0 chr11 113440604 113440631 -37342922 + (CATATA)n Simple_repeat Simple_repeat 4 30 0 244 161 32 16 chr11 113440633 113440695 -37342858 - L1MCa LINE L1 -4358 2068 2006 240 238 19 0 chr11 113440688 113440777 -37342776 - L1MC4 LINE L1 -1339 6983 2006 * 300 250 0 0 chr11 113440777 113440857 -37342696 + (TA)n Simple_repeat Simple_repeat 1 80 0 240 245 0 43 chr11 113440858 113440952 -37342601 - L1MC4 LINE L1 -1339 6703 6614 * 247 296 0 0 chr11 113440919 113441007 -37342546 + L1MC4 LINE L1 6615 6702 -1340 228 182 0 0 chr11 113441011 113441055 -37342498 + (TA)n Simple_repeat Simple_repeat 1 44 0 249 284 0 0 chr11 113441057 113441145 -37342408 + L1MC4 LINE L1 6616 6703 -1339 248 239 0 43 chr11 113441065 113441157 -37342396 - L1MC4 LINE L1 -1341 6701 6614 * 182 191 21 0 chr11 113441160 113441207 -37342346 + (TA)n Simple_repeat Simple_repeat 1 48 0 570 273 106 10 chr11 113441587 113441785 -37341768 + MIR SINE MIR 40 256 -6 2530 65 0 0 chr11 113442465 113442772 -37340781 + AluY SINE Alu 5 311 0 243 61 0 0 chr11 113443065 113443098 -37340455 + (A)n Simple_repeat Simple_repeat 1 33 0 1569 190 21 7 chr11 113443112 113443391 -37340162 + AluJo SINE Alu 9 291 -21 387 0 0 0 chr11 113443392 113443435 -37340118 + (TTAAA)n Simple_repeat Simple_repeat 4 46 0 551 241 44 38 chr11 113443840 113443998 -37339555 + L2 LINE L2 1441 1599 -1715 1898 144 0 7 chr11 113443998 113444276 -37339277 + AluSx SINE Alu 1 276 -36 31 76 0 0 chr11 113444279 113444345 -37339208 + AT_rich Low_complexity Low_complexity 1 66 0 7296 208 33 27 chr11 113444381 113446776 -37336777 - L1M3 LINE L1 -437 5743 3342 3376 50 0 0 chr11 113447121 113447544 -37336009 - L1P LINE L1 -1036 5110 4688 6944 32 1 0 chr11 113447544 113448363 -37335190 + L1PA5 LINE L1 5332 6151 -3 3451 260 110 31 chr11 113448363 113448553 -37335000 + L2 LINE L2 1697 1870 -1443 1918 148 0 35 chr11 113448553 113448863 -37334690 + AluSx SINE Alu 1 299 -13 3451 260 110 31 chr11 113448863 113450103 -37333450 + L2 LINE L2 1870 3294 -19 334 377 0 0 chr11 113450190 113450312 -37333241 - MIR3 SINE MIR -53 155 34 1588 132 35 0 chr11 113451099 113451356 -37332197 + L1PB4 LINE L1 5888 6153 -3 501 288 187 45 chr11 113453020 113453416 -37330137 - Charlie8 DNA MER1_type -1957 460 9 21 0 0 0 chr11 113454023 113454044 -37329509 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr11 113454390 113454419 -37329134 + AT_rich Low_complexity Low_complexity 1 29 0 389 237 10 0 chr11 113454629 113454726 -37328827 - L1ME3 LINE L1 -67 6095 5998 331 298 180 17 chr11 113454801 113454979 -37328574 + MIR SINE MIR 46 252 -10 2245 99 0 17 chr11 113455156 113455458 -37328095 - AluSx SINE Alu -15 297 1 461 290 169 19 chr11 113457695 113458067 -37325486 - L1M4 LINE L1 -2295 3851 3424 24 67 0 0 chr11 113458089 113458134 -37325419 + AT_rich Low_complexity Low_complexity 1 45 0 363 117 39 26 chr11 113458213 113458290 -37325263 - L1M4 LINE L1 -3116 3030 2953 3613 100 18 25 chr11 113458292 113458853 -37324700 + L1PA14 LINE L1 5605 6161 0 638 289 0 6 chr11 113458912 113459078 -37324475 - L2 LINE L2 -1420 1894 1730 2656 246 102 25 chr11 113459078 113460197 -37323356 + L1MDa LINE L1 36 1336 -5204 2963 230 77 36 chr11 113460197 113461396 -37322157 + L1MDa LINE L1 2506 3753 -2787 383 222 34 11 chr11 113461456 113461632 -37321921 + (TA)n Simple_repeat Simple_repeat 1 180 0 723 263 67 0 chr11 113461665 113462207 -37321346 + L1MDa LINE L1 3774 4530 -2010 4959 60 7 52 chr11 113462207 113462922 -37320631 + L1PA5 LINE L1 5471 6153 -1 22 35 0 0 chr11 113462926 113462955 -37320598 + AT_rich Low_complexity Low_complexity 1 29 0 260 313 61 10 chr11 113463272 113463371 -37320182 - L2 LINE L2 -1 3271 3168 285 231 250 0 chr11 113465501 113465609 -37317944 - MIR SINE MIR -12 250 116 282 149 0 0 chr11 113465694 113465741 -37317812 - MADE1 DNA Mariner 0 80 34 1774 207 156 62 chr11 113465762 113466517 -37317036 - LTR1B LTR ERV1 0 826 1 322 260 100 13 chr11 113467126 113467276 -37316277 - MER103 DNA DNA -1 165 3 515 314 110 35 chr11 113467563 113467936 -37315617 + L2 LINE L2 2871 3271 -42 931 310 23 8 chr11 113467944 113468296 -37315257 + L2 LINE L2 2957 3313 0 218 259 47 35 chr11 113468302 113468387 -37315166 - MIR SINE MIR -170 92 7 1728 184 0 7 chr11 113468998 113469286 -37314267 + AluJb SINE Alu 1 286 -26 344 282 7 63 chr11 113469495 113469637 -37313916 + L2 LINE L2 3180 3313 0 315 333 8 38 chr11 113469720 113469852 -37313701 - MIR SINE MIR -123 139 12 276 77 0 0 chr11 113470030 113470069 -37313484 + (TG)n Simple_repeat Simple_repeat 1 39 0 1336 178 75 93 chr11 113470104 113470168 -37313385 + LTR36 LTR ERV1 8 72 -539 2169 107 10 3 chr11 113470168 113470466 -37313087 - AluSx SINE Alu -8 304 5 1336 178 75 93 chr11 113470466 113470944 -37312609 + LTR36 LTR ERV1 72 611 0 552 163 0 0 chr11 113470946 113471038 -37312515 + Tigger5 DNA MER2_type 18 109 -2214 1238 154 0 0 chr11 113471056 113471257 -37312296 + Tigger5 DNA MER2_type 2120 2320 -3 188 65 0 32 chr11 113471283 113471314 -37312239 + (TG)n Simple_repeat Simple_repeat 1 30 0 558 161 54 46 chr11 113472118 113472248 -37311305 - FLAM_A SINE Alu -2 131 1 609 250 64 49 chr11 113474365 113474569 -37308984 + MIR SINE MIR 14 220 -42 1688 198 42 0 chr11 113479055 113479388 -37304165 + MER7A DNA MER2_type 1 345 -1 261 317 45 38 chr11 113479566 113479752 -37303801 - MIR3 SINE MIR -62 146 2 333 0 0 0 chr11 113483284 113483321 -37300232 + (CA)n Simple_repeat Simple_repeat 2 38 0 1634 179 38 24 chr11 113483401 113483692 -37299861 - AluSx SINE Alu -13 299 5 189 211 0 0 chr11 113484077 113484129 -37299424 + (CA)n Simple_repeat Simple_repeat 2 53 0 1826 125 7 11 chr11 113485732 113486019 -37297534 - AluSx SINE Alu -17 295 10 1008 113 0 0 chr11 113486068 113486201 -37297352 + AluSq/x SINE Alu 1 133 -180 941 55 24 0 chr11 113486305 113486432 -37297121 + L1PA5 LINE L1 6023 6152 -2 1612 184 81 103 chr11 113486432 113487138 -37296415 + L1M4 LINE L1 4163 4852 -1294 501 255 14 0 chr11 113487152 113487293 -37296260 + L1M4 LINE L1 4977 5119 -1027 1396 167 17 4 chr11 113487311 113487544 -37296009 + AluSx SINE Alu 9 244 -68 387 250 142 0 chr11 113487603 113487779 -37295774 + L1M4 LINE L1 5102 5302 -844 335 280 166 40 chr11 113487779 113487911 -37295642 - L1MEd LINE L1 -5018 1101 939 2083 106 11 0 chr11 113487911 113488207 -37295346 - AluSc SINE Alu 0 301 3 335 280 166 40 chr11 113488207 113488248 -37295305 - L1MEd LINE L1 -5180 939 905 426 264 84 62 chr11 113488715 113488893 -37294660 - L1MEd LINE L1 -5838 281 93 2191 107 3 0 chr11 113488893 113489184 -37294369 - AluSg SINE Alu -18 292 1 426 264 84 62 chr11 113489184 113489278 -37294275 - L1MEd LINE L1 -6026 93 3 214 238 143 0 chr11 113489682 113489745 -37293808 + L2 LINE L2 3196 3267 -5 23 0 0 0 chr11 113489780 113489803 -37293750 + AT_rich Low_complexity Low_complexity 1 23 0 415 323 31 0 chr11 113490007 113490134 -37293419 + MIR SINE MIR 23 153 -109 500 248 62 16 chr11 113490152 113490281 -37293272 + MIR SINE MIR 94 228 -34 2349 71 0 7 chr11 113490428 113490722 -37292831 + AluY SINE Alu 7 298 -13 222 335 165 24 chr11 113491018 113491182 -37292371 + L3b LINE CR1 1293 1479 -104 240 228 28 152 chr11 113491313 113491458 -37292095 + MER20B DNA MER1_type 7 133 -650 1926 156 25 25 chr11 113492469 113492795 -37290758 + MER1B DNA MER1_type 5 330 -9 23 54 0 0 chr11 113492919 113492956 -37290597 + AT_rich Low_complexity Low_complexity 1 37 0 737 142 0 0 chr11 113492956 113493062 -37290491 + AluJo/FLAM SINE Alu 3 108 -204 1539 156 29 0 chr11 113493062 113493305 -37290248 + AluJo SINE Alu 50 299 -13 2154 85 10 17 chr11 113494232 113494527 -37289026 + AluSc SINE Alu 1 293 -16 252 255 96 96 chr11 113495084 113495178 -37288375 + MIR SINE MIR 31 124 -84 21 0 0 0 chr11 113495266 113495287 -37288266 + AT_rich Low_complexity Low_complexity 1 21 0 1836 158 17 0 chr11 113498215 113498513 -37285040 + AluJo SINE Alu 3 305 -7 2205 115 3 0 chr11 113498663 113498968 -37284585 + AluSg SINE Alu 1 306 -4 189 321 36 0 chr11 113499628 113499684 -37283869 + L2 LINE L2 3191 3248 -24 337 154 62 0 chr11 113499812 113499877 -37283676 - MIR SINE MIR 0 262 194 853 291 52 16 chr11 113499964 113500273 -37283280 + L2 LINE L2 2992 3311 -2 53 57 0 0 chr11 113500324 113500412 -37283141 + AT_rich Low_complexity Low_complexity 1 88 0 674 210 140 99 chr11 113500418 113500550 -37283003 + MIR SINE MIR 8 133 -129 1678 167 0 43 chr11 113500550 113500664 -37282889 + AluJb SINE Alu 1 118 -194 2402 97 0 0 chr11 113500664 113500974 -37282579 - AluY SINE Alu -1 310 1 1678 167 0 43 chr11 113500974 113501164 -37282389 + AluJb SINE Alu 118 292 -20 674 210 140 99 chr11 113501164 113501274 -37282279 + MIR SINE MIR 133 260 -2 202 281 18 0 chr11 113501800 113501857 -37281696 + GA-rich Low_complexity Low_complexity 3 60 0 180 214 48 83 chr11 113501933 113502017 -37281536 + L2 LINE L2 1041 1121 -2193 212 260 39 26 chr11 113502598 113502675 -37280878 + L2 LINE L2 3234 3311 -2 2368 73 0 10 chr11 113504135 113504448 -37279105 + AluSg SINE Alu 1 310 0 338 327 23 64 chr11 113505250 113505470 -37278083 + MIR SINE MIR 50 260 -2 1683 159 22 11 chr11 113505500 113505777 -37277776 - AluJb SINE Alu -27 285 6 734 261 90 45 chr11 113506190 113506658 -37276895 - L1ME LINE L1 -306 5815 5327 256 88 0 0 chr11 113506816 113506850 -37276703 + U2 snRNA snRNA 1 34 -154 2702 186 49 118 chr11 113506850 113507471 -37276082 - L1ME1 LINE L1 -11 6155 5492 2615 40 0 0 chr11 113507471 113507771 -37275782 + AluY SINE Alu 1 300 -11 2702 186 49 118 chr11 113507771 113508022 -37275531 - L1ME1 LINE L1 -674 5492 5225 684 211 0 0 chr11 113508022 113508145 -37275408 + FLAM_C SINE Alu 1 123 -10 2702 186 49 118 chr11 113508145 113508522 -37275031 - L1ME1 LINE L1 -941 5225 4999 2407 57 13 10 chr11 113508522 113508823 -37274730 - AluY SINE Alu -9 302 1 2702 186 49 118 chr11 113508823 113508864 -37274689 - L1ME1 LINE L1 -1167 4999 4957 315 65 0 0 chr11 113508867 113508913 -37274640 + (TG)n Simple_repeat Simple_repeat 2 47 0 287 259 36 0 chr11 113508913 113509025 -37274528 + (TA)n Simple_repeat Simple_repeat 2 117 0 1482 229 30 32 chr11 113509027 113509526 -37274027 - L1ME1 LINE L1 -1207 4939 4442 2040 157 0 0 chr11 113509574 113509886 -37273667 + AluSx SINE Alu 1 312 0 26 50 0 0 chr11 113509886 113509926 -37273627 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr11 113510104 113510129 -37273424 + AT_rich Low_complexity Low_complexity 1 25 0 186 43 0 0 chr11 113510447 113510470 -37273083 + (TAG)n Simple_repeat Simple_repeat 2 24 0 858 239 81 19 chr11 113510881 113511220 -37272333 - MLT1B LTR MaLR 0 390 1 22 0 0 0 chr11 113511730 113511752 -37271801 + AT_rich Low_complexity Low_complexity 1 22 0 458 345 81 39 chr11 113512051 113512361 -37271192 + L3 LINE CR1 259 581 -996 266 260 14 41 chr11 113512369 113512442 -37271111 - L2 LINE L2 0 3272 3202 998 356 82 21 chr11 113512541 113513244 -37270309 + L3 LINE CR1 581 1326 -251 368 326 134 50 chr11 113513243 113513482 -37270071 - MIR SINE MIR -3 259 1 * 351 339 36 31 chr11 113513492 113513687 -37269866 + L3 LINE CR1 1347 1542 -35 8823 22 0 1 chr11 113513709 113514752 -37268801 - L1P LINE L1 -935 5211 4170 1017 17 0 0 chr11 113514752 113514868 -37268685 + L1PA2 LINE L1 6037 6153 -2 196 263 150 38 chr11 113514966 113515046 -37268507 - L2 LINE L2 -1 3271 3183 * 208 335 214 0 chr11 113515021 113515227 -37268326 + MIR SINE MIR 7 256 -6 30 45 0 0 chr11 113515596 113515640 -37267913 + AT_rich Low_complexity Low_complexity 1 44 0 362 386 47 0 chr11 113516585 113516756 -37266797 - MER5A DNA MER1_type -1 188 10 384 243 29 0 chr11 113517729 113517832 -37265721 - MIR SINE MIR -3 259 154 415 159 23 0 chr11 113517884 113517972 -37265581 + L1MA7 LINE L1 6192 6281 -10 2510 65 3 0 chr11 113519685 113519991 -37263562 - AluY SINE Alu -4 307 1 1910 129 39 24 chr11 113521413 113521745 -37261808 + MER1B DNA MER1_type 1 337 0 262 264 75 28 chr11 113521909 113522015 -37261538 + L3 LINE CR1 996 1106 -471 233 333 0 14 chr11 113522063 113522132 -37261421 - L2 LINE L2 0 3272 3205 715 338 105 12 chr11 113522482 113522825 -37260728 + L3 LINE CR1 1173 1547 -30 560 292 35 35 chr11 113522885 113523087 -37260466 - MIR3 SINE MIR -5 203 2 198 350 14 57 chr11 113523107 113523247 -37260306 + L3 LINE CR1 60 193 -1384 213 267 114 29 chr11 113523418 113523523 -37260030 - L2 LINE L2 -1 3312 3199 207 0 0 0 chr11 113523735 113523758 -37259795 + (CTGTG)n Simple_repeat Simple_repeat 1 23 0 336 360 99 19 chr11 113524168 113524329 -37259224 + MIR3 SINE MIR 14 187 -21 222 255 0 0 chr11 113524385 113524436 -37259117 + L2 LINE L2 3263 3313 0 440 284 61 14 chr11 113524933 113525081 -37258472 + MER91B DNA MER1_type 36 190 0 1469 181 4 8 chr11 113525835 113526073 -37257480 + MER8 DNA MER2_type 1 237 -2 23 0 0 0 chr11 113527498 113527521 -37256032 + AT_rich Low_complexity Low_complexity 1 23 0 1884 143 0 51 chr11 113528687 113529002 -37254551 - AluSx SINE Alu -11 301 3 318 307 80 15 chr11 113529380 113529517 -37254036 + MIR SINE MIR 47 192 -70 1787 260 158 24 chr11 113529708 113530722 -37252831 - L2 LINE L2 -2 3311 2152 2119 125 40 11 chr11 113531126 113531477 -37252076 + MER46B DNA MER2_type 1 236 0 220 284 168 0 chr11 113531770 113531865 -37251688 - L2 LINE L2 -3 3310 3200 378 217 36 0 chr11 113532443 113532526 -37251027 + MIR SINE MIR 115 200 -62 333 153 0 0 chr11 113532652 113532724 -37250829 - L1MA4 LINE L1 -3 6297 6226 227 161 81 0 chr11 113532729 113532791 -37250762 - L1MA4 LINE L1 -8 6292 6226 913 171 79 9 chr11 113532796 113533024 -37250529 - L1MA4 LINE L1 -8 6292 6049 21 57 0 0 chr11 113533266 113533301 -37250252 + AT_rich Low_complexity Low_complexity 1 35 0 275 333 208 8 chr11 113534166 113534286 -37249267 + L2 LINE L2 3128 3271 -1 291 269 142 15 chr11 113534586 113534720 -37248833 + MIR SINE MIR 11 161 -47 377 303 139 0 chr11 113535580 113535702 -37247851 + L2 LINE L2 3133 3271 -1 795 263 101 13 chr11 113535854 113536231 -37247322 + L1ME LINE L1 5411 5820 -301 2271 82 3 26 chr11 113536325 113536629 -37246924 + AluSp SINE Alu 1 297 -16 202 224 52 35 chr11 113536632 113536690 -37246863 - L2 LINE L2 -23 3249 3191 1761 98 63 28 chr11 113537139 113537424 -37246129 + AluSx SINE Alu 1 295 -17 211 229 161 73 chr11 113538290 113538482 -37245071 + MIR SINE MIR 48 256 -6 243 284 0 30 chr11 113538801 113538826 -37244727 - L2 LINE L2 -9 3263 3239 413 76 212 0 chr11 113538826 113538892 -37244661 - MADE1 DNA Mariner 0 80 1 243 284 0 30 chr11 113538892 113538933 -37244620 - L2 LINE L2 -33 3239 3199 243 263 53 0 chr11 113539799 113539875 -37243678 - MIR SINE MIR -132 130 51 355 218 13 0 chr11 113539979 113540057 -37243496 + MLT1I LTR MaLR 93 171 -238 3996 163 31 141 chr11 113540492 113540513 -37243040 - Charlie1a DNA MER1_type -1340 1421 1399 2188 116 3 3 chr11 113540513 113540815 -37242738 + AluSg SINE Alu 2 303 -7 3996 163 31 141 chr11 113540815 113541515 -37242038 - Charlie1a DNA MER1_type -1362 1399 761 897 200 0 0 chr11 113541515 113541670 -37241883 - FRAM SINE Alu -24 152 1 3996 163 31 141 chr11 113541670 113542216 -37241337 - Charlie1a DNA MER1_type -2000 761 156 1814 212 79 21 chr11 113542216 113542802 -37240751 - MLT1E3 LTR MaLR 0 624 4 438 310 0 8 chr11 113542809 113542938 -37240615 - Charlie1a DNA MER1_type -1301 154 27 2501 182 19 2 chr11 113543136 113543608 -37239945 + MLT2B2 LTR ERVL 21 500 -15 1247 224 27 0 chr11 113543708 113543967 -37239586 + MLT1A1 LTR MaLR 99 364 -1 198 0 0 0 chr11 113544686 113544708 -37238845 + (TA)n Simple_repeat Simple_repeat 2 23 0 606 238 93 21 chr11 113544852 113545045 -37238508 - MLT1I LTR MaLR -202 207 1 2188 118 0 43 chr11 113545061 113545384 -37238169 - AluSx SINE Alu -3 309 1 248 224 20 0 chr11 113545445 113545494 -37238059 + MLT1I LTR MaLR 195 244 -165 528 292 127 42 chr11 113547493 113547870 -37235683 + MLT1I LTR MaLR 1 409 0 630 301 64 0 chr11 113547895 113548098 -37235455 - MLT1J2 LTR MaLR -34 416 201 670 162 0 0 chr11 113548155 113548272 -37235281 - AluSg/x SINE Alu 0 312 196 612 285 29 0 chr11 113548422 113548594 -37234959 + MER45A DNA AcHobo 1 177 -1 237 300 14 57 chr11 113549737 113549877 -37233676 - MIR SINE MIR -56 206 73 2054 128 3 3 chr11 113550149 113550439 -37233114 - AluSx SINE Alu -22 290 1 838 146 0 0 chr11 113550756 113550900 -37232653 - L1MC3 LINE L1 -17 7768 7625 357 245 117 0 chr11 113550913 113551007 -37232546 - MLT1J2 LTR MaLR -489 106 2 706 231 118 11 chr11 113551166 113551352 -37232201 + MLT1I LTR MaLR 64 269 -140 2191 136 24 0 chr11 113552553 113552892 -37230661 - MER7A DNA MER2_type -1 345 1 286 336 121 0 chr11 113552892 113553008 -37230545 + L2 LINE L2 3139 3268 -4 638 233 78 39 chr11 113553586 113553818 -37229735 - L1ME1 LINE L1 -4 6162 5922 * 824 216 91 25 chr11 113553810 113554130 -37229423 - L1MC5 LINE L1 -317 7644 7304 296 229 131 49 chr11 113554175 113554358 -37229195 - MLT1K LTR MaLR -13 575 378 296 315 22 0 chr11 113554424 113554516 -37229037 - MLT1K LTR MaLR -338 250 157 382 367 13 19 chr11 113555987 113556145 -37227408 - L2 LINE L2 0 3272 3116 575 316 57 45 chr11 113556281 113556721 -37226832 - L2 LINE L2 -710 2604 2160 335 281 26 35 chr11 113556982 113557096 -37226457 - L1MC4a LINE L1 -1884 5924 5812 263 49 0 0 chr11 113557459 113557500 -37226053 + L1MA4A LINE L1 6261 6301 -2 1131 120 5 10 chr11 113557707 113557899 -37225654 - MER6 DNA MER2_type -4 861 671 1997 137 0 3 chr11 113557901 113558185 -37225368 + AluSx SINE Alu 1 283 -29 36 0 0 0 chr11 113558256 113558292 -37225261 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr11 113558844 113558867 -37224686 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 113559786 113559807 -37223746 + AT_rich Low_complexity Low_complexity 1 21 0 2048 143 3 0 chr11 113559888 113560181 -37223372 - AluSx SINE Alu -18 294 1 1358 193 64 4 chr11 113560215 113560325 -37223228 + AluJb SINE Alu 1 103 -209 228 35 0 0 chr11 113560325 113560354 -37223199 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1358 193 64 4 chr11 113560354 113560507 -37223046 + AluJb SINE Alu 103 280 -32 183 80 0 0 chr11 113560507 113560532 -37223021 + (GGAGAA)n Simple_repeat Simple_repeat 4 28 0 957 150 0 0 chr11 113560536 113560683 -37222870 + FRAM SINE Alu 27 173 -3 286 244 12 0 chr11 113560752 113560834 -37222719 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 234 30 61 0 chr11 113561499 113561532 -37222021 - MER75 DNA T2_type -5 509 475 1809 81 0 0 chr11 113562147 113562370 -37221183 + AluSq SINE Alu 1 223 -90 4313 69 7 0 chr11 113562698 113563248 -37220305 + MER41A LTR ERV1 1 554 0 301 360 9 9 chr11 113564538 113564652 -37218901 - MIR3 SINE MIR -12 196 83 5313 128 12 6 chr11 113565121 113566024 -37217529 - L1PA13 LINE L1 -1 6162 5254 933 188 0 12 chr11 113566062 113566227 -37217326 - FAM SINE Alu -8 167 5 1740 144 21 28 chr11 113566463 113566748 -37216805 + AluSq SINE Alu 1 283 -30 495 314 91 0 chr11 113566972 113567192 -37216361 - MER115 DNA AcHobo -238 455 216 559 217 86 18 chr11 113567218 113567339 -37216214 - Charlie5 DNA MER1_type 0 2624 2513 2371 102 0 0 chr11 113567339 113567634 -37215919 - AluSx SINE Alu -17 295 1 559 217 86 18 chr11 113567634 113567774 -37215779 - Charlie5 DNA MER1_type -111 2513 26 2142 123 3 22 chr11 113568110 113568428 -37215125 - AluSx SINE Alu 0 312 1 187 309 118 0 chr11 113568575 113568643 -37214910 + MIR SINE MIR 82 157 -105 * 756 235 134 0 chr11 113568636 113568853 -37214700 - MIR SINE MIR 0 262 17 283 226 0 0 chr11 113568861 113568914 -37214639 + L2 LINE L2 3201 3253 -19 207 191 36 164 chr11 113571816 113571926 -37211627 + MIR SINE MIR 111 206 -56 784 96 0 22 chr11 113571984 113572119 -37211434 + (TTCC)n Simple_repeat Simple_repeat 4 135 0 351 313 26 41 chr11 113574098 113574293 -37209260 + L2 LINE L2 2809 3000 -313 523 285 48 0 chr11 113574475 113574620 -37208933 + MIR3 SINE MIR 28 180 -28 226 357 129 20 chr11 113574945 113575239 -37208314 + L2 LINE L2 2433 2758 -556 459 325 52 12 chr11 113576414 113576663 -37206890 - MIR SINE MIR -2 260 2 1973 145 0 0 chr11 113576961 113577245 -37206308 + AluSx SINE Alu 3 319 0 232 61 0 0 chr11 113577245 113577278 -37206275 + (TAAAA)n Simple_repeat Simple_repeat 3 170 0 2009 137 0 7 chr11 113578770 113579076 -37204477 + AluSx SINE Alu 1 304 -8 190 296 186 32 chr11 113579184 113579437 -37204116 + L2 LINE L2 2814 3105 -208 227 277 15 0 chr11 113579510 113579575 -37203978 + (TATATG)n Simple_repeat Simple_repeat 5 70 0 287 238 0 0 chr11 113580485 113580548 -37203005 + MER115 DNA AcHobo 601 663 -30 3131 153 32 55 chr11 113580699 113581222 -37202331 - L1MA9 LINE L1 -17 6295 5761 219 69 0 0 chr11 113581222 113581251 -37202302 + (TA)n Simple_repeat Simple_repeat 2 30 0 2024 102 10 14 chr11 113581257 113581551 -37202002 - AluSp SINE Alu -20 293 1 3131 153 32 55 chr11 113581551 113581705 -37201848 - L1MA9 LINE L1 -556 5756 5627 1930 158 0 0 chr11 113581712 113582003 -37201550 - AluSx SINE Alu -21 291 1 2046 152 0 10 chr11 113582975 113583285 -37200268 + AluSx SINE Alu 1 307 -5 939 198 6 0 chr11 113583674 113583836 -37199717 - FAM SINE Alu -12 163 1 793 241 90 0 chr11 113584347 113584592 -37198961 + L1ME1 LINE L1 5792 6058 -108 261 100 0 0 chr11 113584693 113584733 -37198820 - L1M3c LINE L1 -4761 1140 1101 1677 167 102 12 chr11 113584733 113585068 -37198485 - MLT1A1 LTR MaLR 0 365 1 750 175 4 143 chr11 113585068 113585348 -37198205 - L1MB1 LINE L1 -146 6022 5782 420 143 0 0 chr11 113585348 113585418 -37198135 + (TA)n Simple_repeat Simple_repeat 1 70 0 1760 152 7 24 chr11 113585460 113585756 -37197797 - AluSx SINE Alu -21 291 1 201 74 0 0 chr11 113585768 113585795 -37197758 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 1999 152 9 19 chr11 113585795 113586110 -37197443 - AluSx SINE Alu 0 312 1 2786 150 23 13 chr11 113586113 113586960 -37196593 - L1MB1 LINE L1 -389 5779 4918 604 280 23 0 chr11 113586959 113587177 -37196376 - L1M3c LINE L1 -3579 2391 2169 * 390 74 0 0 chr11 113587173 113587227 -37196326 - L1M3b LINE L1 -4738 1543 1490 * 956 181 22 6 chr11 113587232 113587414 -37196139 - MLT1A1 LTR MaLR 0 365 181 1174 224 105 0 chr11 113587414 113587766 -37195787 - L1M3c LINE L1 -4827 1064 676 293 291 35 25 chr11 113587920 113588043 -37195510 - L1M3c LINE L1 -5214 677 289 1026 331 22 19 chr11 113588179 113588779 -37194774 - L1 LINE L1 -5252 639 1 21 82 0 0 chr11 113588925 113588974 -37194579 + AT_rich Low_complexity Low_complexity 1 49 0 736 163 0 24 chr11 113589088 113589211 -37194342 - FLAM_C SINE Alu -12 131 12 276 246 35 0 chr11 113589382 113589439 -37194114 + L2 LINE L2 3193 3251 -21 451 250 118 14 chr11 113589487 113589631 -37193922 + MIR SINE MIR 10 168 -94 21 0 0 0 chr11 113590363 113590384 -37193169 + AT_rich Low_complexity Low_complexity 1 21 0 1211 156 48 41 chr11 113590392 113590428 -37193125 - MER61B LTR ERV1 -28 396 362 2177 147 41 14 chr11 113590428 113590865 -37192688 - LTR7 LTR ERV1 -1 449 1 1211 156 48 41 chr11 113590865 113591128 -37192425 - MER61B LTR ERV1 -62 362 2 35 41 0 0 chr11 113591129 113591178 -37192375 + AT_rich Low_complexity Low_complexity 1 49 0 4755 37 3 2 chr11 113591969 113592543 -37191010 - L1PA5 LINE L1 -4 6150 5576 668 243 15 0 chr11 113592592 113592728 -37190825 - MER5A DNA MER1_type -50 139 2 2773 83 98 0 chr11 113592908 113593316 -37190237 + LTR7 LTR ERV1 1 448 -2 14682 142 54 51 chr11 113593318 113597275 -37186278 + HERVH LTR ERV1 1 3993 -3720 4186 137 0 3 chr11 113597277 113597941 -37185612 + HERVH LTR ERV1 4488 5149 -2564 1162 112 83 10 chr11 113597942 113598147 -37185406 + HERVH LTR ERV1 5600 5819 -1894 2252 99 48 8 chr11 113598147 113598522 -37185031 + HERVH LTR ERV1 7324 7713 0 1733 75 391 0 chr11 113598522 113598844 -37184709 + LTR7 LTR ERV1 1 448 -2 822 226 113 0 chr11 113599308 113599520 -37184033 - MIR SINE MIR -22 240 5 1511 157 42 35 chr11 113599582 113599888 -37183665 - AluJb SINE Alu 0 312 1 1920 130 4 4 chr11 113599891 113600168 -37183385 - AluSx SINE Alu -35 277 1 1045 186 69 51 chr11 113600584 113600934 -37182619 - L1ME LINE L1 -544 5618 5263 26 64 0 0 chr11 113601001 113601048 -37182505 + AT_rich Low_complexity Low_complexity 1 47 0 758 229 77 107 chr11 113601048 113601554 -37181999 + L1ME3 LINE L1 5619 6109 -53 1780 157 0 46 chr11 113601624 113601930 -37181623 + AluJb SINE Alu 2 293 -19 347 263 195 0 chr11 113601935 113602053 -37181500 + L2 LINE L2 3169 3309 -4 320 275 78 21 chr11 113602540 113602682 -37180871 + L1MA4 LINE L1 4903 5052 -1094 227 250 136 16 chr11 113602801 113602985 -37180568 + L1MC/D LINE L1 5265 5470 -2338 1987 141 0 3 chr11 113603080 113603396 -37180157 + AluSx SINE Alu 1 315 0 1147 197 84 84 chr11 113603688 113603757 -37179796 + LTR37B LTR ERV1 6 74 -394 1733 164 3 23 chr11 113603757 113604067 -37179486 - AluSx SINE Alu -8 304 1 1147 197 84 84 chr11 113604067 113604449 -37179104 + LTR37B LTR ERV1 73 457 -11 2044 146 3 13 chr11 113604455 113604770 -37178783 + AluJb SINE Alu 1 312 0 2178 120 48 31 chr11 113604829 113605187 -37178366 - THE1B LTR MaLR 0 364 1 461 92 0 0 chr11 113605217 113605293 -37178260 - L1PB1 LINE L1 0 6151 6076 1925 138 3 10 chr11 113605523 113605813 -37177740 - AluSq SINE Alu -25 288 1 2250 90 0 10 chr11 113606379 113606678 -37176875 - AluY SINE Alu -15 296 1 3010 147 45 74 chr11 113606765 113607246 -37176307 + L1MA4 LINE L1 5211 5666 -634 2244 121 19 27 chr11 113607246 113607611 -37175942 - THE1B LTR MaLR -2 362 1 3010 147 45 74 chr11 113607611 113607889 -37175664 + L1MA4 LINE L1 5666 5950 -350 616 72 0 0 chr11 113607889 113607972 -37175581 + L1P4 LINE L1 5720 5802 -363 2183 128 27 38 chr11 113607972 113608297 -37175256 + THE1B LTR MaLR 1 324 -40 1998 121 7 7 chr11 113608297 113608623 -37174930 - AluSx SINE Alu 0 326 1 2183 128 27 38 chr11 113608623 113608664 -37174889 + THE1B LTR MaLR 324 364 0 2801 121 7 0 chr11 113608664 113609164 -37174389 + THE1B-int LTR MaLR 1 503 -1148 277 146 0 0 chr11 113609165 113609206 -37174347 - MER58 DNA MER1_type -58 283 243 1782 133 7 15 chr11 113609208 113609478 -37174075 + AluSx SINE Alu 1 268 -44 1731 140 35 21 chr11 113609513 113609799 -37173754 - THE1B LTR MaLR -74 290 1 760 199 29 0 chr11 113609834 113610005 -37173548 - MER58 DNA MER1_type -84 257 82 552 242 32 0 chr11 113610006 113610130 -37173423 + FLAM_A SINE Alu 2 129 -4 199 373 63 8 chr11 113610741 113610867 -37172686 + L2 LINE L2 2928 3060 -212 1016 320 159 37 chr11 113611248 113612254 -37171299 + L2 LINE L2 1813 2941 -373 2319 71 0 7 chr11 113612496 113612793 -37170760 + AluY SINE Alu 1 295 -16 22 35 0 0 chr11 113613145 113613174 -37170379 + AT_rich Low_complexity Low_complexity 1 29 0 560 305 71 105 chr11 113613369 113613720 -37169833 - L2 LINE L2 -3 3269 2931 296 287 173 20 chr11 113613753 113613903 -37169650 - L2 LINE L2 -976 2338 2166 803 256 27 22 chr11 113614133 113614356 -37169197 + MER58A DNA MER1_type 1 224 0 1196 182 13 0 chr11 113614642 113614873 -37168680 - L1ME LINE L1 -404 5762 5529 216 368 0 0 chr11 113615598 113615670 -37167883 + MIR SINE MIR 20 92 -116 619 167 35 0 chr11 113615711 113615825 -37167728 - MER46A DNA MER2_type 0 236 119 1255 194 0 53 chr11 113615833 113616096 -37167457 + AluJo SINE Alu 62 310 -2 1371 225 80 30 chr11 113616126 113616589 -37166964 + L1MA9 LINE L1 5789 6274 -38 1152 262 143 12 chr11 113616611 113617448 -37166105 + L1M4 LINE L1 2260 3206 -2940 719 196 51 28 chr11 113617446 113617660 -37165893 + L1PA16 LINE L1 5941 6159 -7 * 449 239 113 9 chr11 113617656 113617878 -37165675 + L1M4 LINE L1 3190 3434 -2712 * 872 248 38 34 chr11 113617952 113618420 -37165133 - MER90 LTR ERV1 -64 550 1 697 229 79 9 chr11 113618427 113618654 -37164899 + L1ME3A LINE L1 5927 6169 -1 27 0 0 0 chr11 113618777 113618804 -37164749 + AT_rich Low_complexity Low_complexity 1 27 0 673 220 156 11 chr11 113620335 113620521 -37163032 - MER20 DNA MER1_type -1 218 6 2229 162 22 20 chr11 113622173 113622574 -37160979 + MER68 LTR ERV1 1 402 -160 1977 100 7 7 chr11 113622817 113623087 -37160466 - AluSq SINE Alu -43 270 1 228 289 0 62 chr11 113623151 113623248 -37160305 - L2 LINE L2 0 3272 3182 * 535 258 20 20 chr11 113623247 113623398 -37160155 - MIR SINE MIR 0 262 112 622 324 120 34 chr11 113623818 113624362 -37159191 - L2 LINE L2 -10 3303 2701 725 180 88 69 chr11 113624365 113624582 -37158971 - MER58B DNA MER1_type 0 341 121 22 0 0 0 chr11 113625366 113625388 -37158165 + AT_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr11 113625766 113625820 -37157733 + AT_rich Low_complexity Low_complexity 1 54 0 844 193 0 12 chr11 113626390 113626551 -37157002 - AluJo SINE Alu -124 188 30 2514 195 15 19 chr11 113626552 113627071 -37156482 + MER82 DNA MER2_type 21 537 -116 2140 105 41 0 chr11 113627478 113627772 -37155781 + AluSx SINE Alu 3 308 -4 22 21 0 62 chr11 113628940 113628988 -37154565 + AT_rich Low_complexity Low_complexity 1 45 0 268 236 202 8 chr11 113629018 113629154 -37154399 + L1MC/D LINE L1 5652 5811 -310 359 101 34 11 chr11 113629166 113629247 -37154306 + (TA)n Simple_repeat Simple_repeat 2 87 -5 754 23 0 0 chr11 113629247 113629335 -37154218 - L1PA5 LINE L1 -8 6146 6059 359 101 34 11 chr11 113629335 113629342 -37154211 + (TA)n Simple_repeat Simple_repeat 87 92 0 21 57 0 0 chr11 113629525 113629560 -37153993 + AT_rich Low_complexity Low_complexity 1 35 0 281 250 52 37 chr11 113630336 113630472 -37153081 - L1MC5 LINE L1 -36 7925 7788 487 237 65 37 chr11 113630530 113630745 -37152808 - L1MC5 LINE L1 -264 7697 7477 989 248 53 90 chr11 113630905 113631296 -37152257 - L1MC5 LINE L1 -764 7197 6837 2174 128 0 0 chr11 113631296 113631600 -37151953 - AluSx SINE Alu -8 304 1 989 248 53 90 chr11 113631600 113631871 -37151682 - L1MC5 LINE L1 -1124 6837 6558 31 0 0 0 chr11 113632805 113632836 -37150717 + AT_rich Low_complexity Low_complexity 1 31 0 215 362 0 0 chr11 113633238 113633296 -37150257 + L2 LINE L2 3205 3262 -10 931 210 0 0 chr11 113633754 113633921 -37149632 + AluJb SINE Alu 126 292 -20 24 0 0 0 chr11 113634070 113634094 -37149459 + AT_rich Low_complexity Low_complexity 1 24 0 310 243 40 61 chr11 113635611 113635759 -37147794 - MER103 DNA DNA 0 166 22 1941 148 7 10 chr11 113636122 113636427 -37147126 + AluJb SINE Alu 1 304 -8 233 156 0 0 chr11 113636945 113636990 -37146563 - L1MD3 LINE L1 -13 7982 7938 207 242 242 33 chr11 113638084 113638176 -37145377 - L2 LINE L2 0 3313 3241 654 257 63 0 chr11 113638176 113638382 -37145171 - MER20 DNA MER1_type 0 219 1 207 242 242 33 chr11 113638382 113638409 -37145144 - L2 LINE L2 -72 3241 3169 322 320 8 16 chr11 113638472 113638594 -37144959 - MIR SINE MIR -116 146 26 2371 73 0 7 chr11 113638595 113638895 -37144658 - AluY SINE Alu -13 298 1 284 311 0 0 chr11 113639512 113639586 -37143967 - L2 LINE L2 -6 3307 3234 920 305 122 25 chr11 113639764 113640558 -37142995 - L2 LINE L2 -95 3218 2349 192 390 59 0 chr11 113640588 113640706 -37142847 + L2 LINE L2 3141 3265 -7 27 49 0 0 chr11 113640803 113640844 -37142709 + AT_rich Low_complexity Low_complexity 1 41 0 2194 100 10 7 chr11 113641358 113641667 -37141886 + AluSx SINE Alu 1 310 -2 2691 182 64 8 chr11 113641833 113642365 -37141188 - MER68 LTR ERV1 0 562 1 205 241 19 0 chr11 113642981 113643035 -37140518 - L2 LINE L2 -5 3308 3254 3575 256 146 58 chr11 113643048 113643255 -37140298 - L1MDa LINE L1 -4255 2285 2098 1564 57 28 9 chr11 113643255 113643467 -37140086 - AluY SINE Alu -17 294 79 3575 256 146 58 chr11 113643467 113644605 -37138948 - L1MDa LINE L1 -4442 2098 690 225 0 0 0 chr11 113644605 113644630 -37138923 + (TG)n Simple_repeat Simple_repeat 1 25 0 3575 256 146 58 chr11 113644630 113645358 -37138195 - L1MDa LINE L1 -5850 690 28 1909 192 159 6 chr11 113645727 113646235 -37137318 - L1MC3 LINE L1 0 7805 7233 197 261 15 31 chr11 113646802 113646867 -37136686 + MIR SINE MIR 191 254 -8 191 59 0 29 chr11 113648150 113648184 -37135369 + (TTTTTA)n Simple_repeat Simple_repeat 4 36 0 43451 37 6 3 chr11 113648185 113654307 -37129246 - L1PA3 LINE L1 -3 6152 9 1790 182 3 0 chr11 113654341 113654637 -37128916 + AluSx SINE Alu 1 297 -15 206 361 60 0 chr11 113655948 113656031 -37127522 - L2 LINE L2 -1 3271 3184 323 302 231 5 chr11 113656097 113656309 -37127244 + MIR SINE MIR 3 262 0 2094 119 3 3 chr11 113656839 113657133 -37126420 - AluSx SINE Alu -18 294 1 2071 122 20 3 chr11 113658545 113658848 -37124705 - AluSx SINE Alu -4 308 1 426 328 98 6 chr11 113658927 113659269 -37124284 - L1MC/D LINE L1 -326 5795 5424 27 0 0 0 chr11 113659359 113659386 -37124167 + AT_rich Low_complexity Low_complexity 1 27 0 2084 114 0 0 chr11 113660727 113661041 -37122512 + AluSg SINE Alu 1 314 0 1412 311 145 32 chr11 113661612 113661712 -37121841 - L2 LINE L2 -7 3306 3219 186 43 0 0 chr11 113661712 113661735 -37121818 + (TG)n Simple_repeat Simple_repeat 1 23 0 1412 311 145 32 chr11 113661735 113662779 -37120774 - L2 LINE L2 -94 3219 2002 215 348 135 22 chr11 113662783 113663050 -37120503 - L2 LINE L2 -405 2909 2613 1147 181 86 23 chr11 113663109 113663330 -37120223 - AluJo SINE Alu -74 238 4 22 70 0 0 chr11 113663976 113664019 -37119534 + AT_rich Low_complexity Low_complexity 1 43 0 507 292 34 22 chr11 113664750 113664928 -37118625 - MLT1J LTR MaLR -261 250 71 22 0 0 0 chr11 113665222 113665244 -37118309 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 113665737 113665765 -37117788 + AT_rich Low_complexity Low_complexity 1 28 0 1095 323 159 34 chr11 113668871 113669874 -37113679 + L2 LINE L2 1813 2941 -373 180 240 87 58 chr11 113669992 113670096 -37113457 + L2 LINE L2 3112 3218 -95 2280 71 0 7 chr11 113670115 113670412 -37113141 + AluY SINE Alu 1 295 -16 22 35 0 0 chr11 113670764 113670793 -37112760 + AT_rich Low_complexity Low_complexity 1 29 0 547 305 71 105 chr11 113670988 113671339 -37112214 - L2 LINE L2 -3 3269 2931 289 287 173 20 chr11 113671372 113671522 -37112031 - L2 LINE L2 -976 2338 2166 813 256 27 22 chr11 113671752 113671975 -37111578 + MER58A DNA MER1_type 1 224 0 188 303 198 31 chr11 113672029 113672191 -37111362 + MIR SINE MIR 13 201 -61 1286 178 30 0 chr11 113672261 113672497 -37111056 - L1ME LINE L1 -404 5762 5520 263 369 126 9 chr11 113673217 113673330 -37110223 + MIR SINE MIR 20 118 -144 1350 143 54 0 chr11 113673330 113673554 -37109999 - MER46A DNA MER2_type 0 236 1 263 369 126 9 chr11 113673554 113673654 -37109899 + MIR SINE MIR 118 258 -4 25 31 0 0 chr11 113674379 113674411 -37109142 + AT_rich Low_complexity Low_complexity 1 32 0 345 287 56 49 chr11 113675139 113675282 -37108271 + MIR3 SINE MIR 17 160 -48 1864 114 0 4 chr11 113677126 113677380 -37106173 - AluSx SINE Alu -59 253 1 3153 230 74 43 chr11 113678014 113679219 -37104334 - L1MDb LINE L1 -4081 2325 1085 1731 176 0 23 chr11 113679219 113679520 -37104033 - AluJb SINE Alu -17 295 2 3153 230 74 43 chr11 113679520 113679841 -37103712 - L1MDb LINE L1 -5321 1085 775 21 0 0 0 chr11 113681713 113681734 -37101819 + AT_rich Low_complexity Low_complexity 1 21 0 230 242 38 102 chr11 113682627 113682784 -37100769 - MIR SINE MIR -46 216 70 2181 105 3 0 chr11 113683212 113683508 -37100045 - AluSq SINE Alu -16 297 1 23 54 0 0 chr11 113683547 113683584 -37099969 + AT_rich Low_complexity Low_complexity 1 37 0 496 281 143 22 chr11 113683592 113683789 -37099764 - MIR SINE MIR -32 230 11 208 377 127 32 chr11 113684175 113684552 -37099001 + L2 LINE L2 1480 1892 -1422 257 387 46 6 chr11 113684567 113684740 -37098813 + L2 LINE L2 3093 3272 0 48 18 0 0 chr11 113684977 113685032 -37098521 + AT_rich Low_complexity Low_complexity 1 55 0 1778 219 30 112 chr11 113686156 113687034 -37096519 - L1MC3 LINE L1 0 7785 6980 441 305 34 62 chr11 113687710 113687887 -37095666 + MIR SINE MIR 29 200 -62 24 77 0 0 chr11 113688121 113688173 -37095380 + AT_rich Low_complexity Low_complexity 1 52 0 250 335 71 90 chr11 113688448 113688660 -37094893 + L2 LINE L2 2968 3176 -96 2211 120 0 0 chr11 113688660 113688959 -37094594 - AluSx SINE Alu -13 299 1 250 335 71 90 chr11 113688959 113689012 -37094541 + L2 LINE L2 3176 3228 -44 269 143 0 32 chr11 113689170 113689233 -37094320 + (TGAA)n Simple_repeat Simple_repeat 2 62 0 26 0 0 0 chr11 113690283 113690309 -37093244 + AT_rich Low_complexity Low_complexity 1 26 0 32 43 0 0 chr11 113691551 113691597 -37091956 + AT_rich Low_complexity Low_complexity 1 46 0 229 255 0 0 chr11 113692552 113692599 -37090954 - L2 LINE L2 -1 3312 3266 26 64 0 0 chr11 113692956 113693003 -37090550 + AT_rich Low_complexity Low_complexity 1 47 0 337 297 198 0 chr11 113693221 113693332 -37090221 - MER5A DNA MER1_type 0 189 57 218 193 18 0 chr11 113693473 113693530 -37090023 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 314 252 8 59 chr11 113694208 113694327 -37089226 - L1MC4 LINE L1 -1339 6703 6591 318 383 87 41 chr11 113694928 113695124 -37088429 + L2 LINE L2 3039 3243 -29 262 352 205 43 chr11 113695911 113696306 -37087247 + L2 LINE L2 2812 3270 -2 24 53 0 0 chr11 113697197 113697235 -37086318 + AT_rich Low_complexity Low_complexity 1 38 0 27 29 0 0 chr11 113697389 113697423 -37086130 + AT_rich Low_complexity Low_complexity 1 34 0 28 79 0 0 chr11 113700646 113700709 -37082844 + AT_rich Low_complexity Low_complexity 1 63 0 386 252 160 8 chr11 113701861 113701992 -37081561 + L2 LINE L2 3163 3313 0 365 311 90 87 chr11 113702229 113702550 -37081003 - L2 LINE L2 -15 3257 2936 430 155 95 122 chr11 113702898 113702979 -37080574 - Charlie4 DNA MER1_type 0 1961 1884 2068 142 0 3 chr11 113702979 113703290 -37080263 - AluSg SINE Alu 0 310 1 430 155 95 122 chr11 113703290 113703356 -37080197 - Charlie4 DNA MER1_type -77 1884 1818 180 0 0 0 chr11 113703594 113703614 -37079939 + (TG)n Simple_repeat Simple_repeat 1 20 0 37 23 0 0 chr11 113703674 113703718 -37079835 + AT_rich Low_complexity Low_complexity 1 44 0 30 69 0 0 chr11 113703979 113704037 -37079516 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr11 113704320 113704341 -37079212 + AT_rich Low_complexity Low_complexity 1 21 0 279 175 16 0 chr11 113704907 113704970 -37078583 + MADE1 DNA Mariner 16 79 -1 2110 106 13 16 chr11 113705485 113705797 -37077756 - AluSp SINE Alu -2 311 1 2913 237 96 16 chr11 113706063 113706672 -37076881 - L1MC4 LINE L1 -748 5398 5203 2160 114 0 7 chr11 113706672 113706969 -37076584 - AluSx SINE Alu -16 296 2 2913 237 96 16 chr11 113706969 113707828 -37075725 - L1MC4 LINE L1 -943 5203 4414 405 321 89 20 chr11 113707978 113708224 -37075329 - L2 LINE L2 -458 2856 2594 278 324 57 9 chr11 113708316 113708421 -37075132 + L2 LINE L2 3204 3313 0 1881 173 3 0 chr11 113709393 113709700 -37073853 - AluJo SINE Alu -4 308 1 21 36 0 0 chr11 113710063 113710091 -37073462 + AT_rich Low_complexity Low_complexity 1 28 0 577 241 82 18 chr11 113710286 113710456 -37073097 - MER5A DNA MER1_type 0 189 9 22 0 0 0 chr11 113710536 113710558 -37072995 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr11 113711143 113711179 -37072374 + AT_rich Low_complexity Low_complexity 1 36 0 2204 89 3 0 chr11 113712763 113713079 -37070474 - AluSx SINE Alu 0 317 1 344 326 63 46 chr11 113713396 113713445 -37070108 + MER5B DNA MER1_type 1 48 -130 189 0 0 0 chr11 113713445 113713466 -37070087 + (CAA)n Simple_repeat Simple_repeat 2 22 0 344 326 63 46 chr11 113713466 113713591 -37069962 + MER5B DNA MER1_type 48 178 0 189 0 0 0 chr11 113714247 113714268 -37069285 + (T)n Simple_repeat Simple_repeat 1 21 0 221 346 40 40 chr11 113714723 113714824 -37068729 - L2 LINE L2 -4 3309 3209 2145 132 19 35 chr11 113715902 113716272 -37067281 - THE1B LTR MaLR 0 364 1 270 239 48 58 chr11 113716488 113716676 -37066877 - L1ME4a LINE L1 -59 6062 5877 252 284 25 0 chr11 113717041 113717122 -37066431 - HAL1 LINE L1 -860 1647 1565 452 193 42 50 chr11 113717565 113717684 -37065869 - L2 LINE L2 -3 3310 3193 7733 263 63 24 chr11 113717692 113718879 -37064674 - L2 LINE L2 -331 2982 1842 2086 125 3 0 chr11 113718879 113719174 -37064379 - AluSx SINE Alu -14 298 3 7733 263 63 24 chr11 113719174 113720441 -37063112 - L2 LINE L2 -1471 1842 432 33 43 0 0 chr11 113721385 113721432 -37062121 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr11 113721494 113721515 -37062038 + AT_rich Low_complexity Low_complexity 1 21 0 406 370 58 56 chr11 113722643 113723284 -37060269 - L2 LINE L2 -339 2975 2334 908 144 48 11 chr11 113724215 113724402 -37059151 + L1PB1 LINE L1 5955 6148 -3 25 65 0 0 chr11 113724460 113724506 -37059047 + AT_rich Low_complexity Low_complexity 1 46 0 7832 176 14 22 chr11 113725406 113725429 -37058124 - L1M LINE L1 -701 5420 5398 313 125 48 67 chr11 113725429 113725533 -37058020 - L1MA5 LINE L1 -1 6299 6198 7832 176 14 22 chr11 113725533 113726390 -37057163 - L1M LINE L1 -723 5398 4562 2073 130 7 0 chr11 113726390 113726697 -37056856 - AluSx SINE Alu -3 309 1 7832 176 14 22 chr11 113726697 113727433 -37056120 - L1M LINE L1 -1559 4562 3822 292 346 33 70 chr11 113728284 113728467 -37055086 + L2 LINE L2 2109 2280 -1034 1663 175 20 10 chr11 113728467 113728759 -37054794 + AluJb SINE Alu 1 295 -17 292 346 33 70 chr11 113728759 113728847 -37054706 + L2 LINE L2 2280 2370 -944 2016 231 84 9 chr11 113729139 113730170 -37053383 + L1ME1 LINE L1 4694 5976 -190 310 289 0 13 chr11 113730914 113730990 -37052563 + FLAM_A SINE Alu 2 76 -56 249 200 0 0 chr11 113730988 113731038 -37052515 + Alu SINE Alu 253 302 0 * 279 143 20 5 chr11 113731044 113731113 -37052440 + L1M2 LINE L1 5365 5428 -693 2097 118 0 13 chr11 113731134 113731438 -37052115 + AluSg SINE Alu 2 301 -9 21 0 0 0 chr11 113732838 113732859 -37050694 + AT_rich Low_complexity Low_complexity 1 21 0 215 214 0 0 chr11 113732948 113732990 -37050563 + GA-rich Low_complexity Low_complexity 1 42 0 1773 135 33 0 chr11 113733402 113733676 -37049877 + AluJb SINE Alu 18 300 -12 27 0 0 0 chr11 113734947 113734974 -37048579 + AT_rich Low_complexity Low_complexity 1 27 0 2296 103 0 0 chr11 113735188 113735490 -37048063 - AluSp SINE Alu -11 302 1 2218 92 3 3 chr11 113735556 113735848 -37047705 - AluSc SINE Alu -17 292 1 14253 186 20 3 chr11 113736067 113740016 -37043537 - L1PB1 LINE L1 -7 6860 2840 2898 124 13 20 chr11 113740013 113741001 -37042552 - L1PB1 LINE L1 -5104 1759 629 * 1037 168 10 5 chr11 113740997 113741194 -37042359 - L1PB1 LINE L1 -6663 200 3 * 236 170 0 0 chr11 113741212 113741259 -37042294 - HAL1 LINE L1 -197 2310 2264 251 227 36 27 chr11 113741280 113741390 -37042163 - HAL1 LINE L1 -423 2084 1974 1011 258 72 44 chr11 113741441 113741739 -37041814 - HAL1 LINE L1 -652 1855 1542 747 184 51 87 chr11 113741739 113741935 -37041618 + MER5A DNA MER1_type 1 189 0 1011 258 72 44 chr11 113741935 113742023 -37041530 - HAL1 LINE L1 -965 1542 1458 386 261 89 39 chr11 113742028 113742208 -37041345 - HAL1 LINE L1 -1630 877 689 733 165 0 16 chr11 113742576 113742697 -37040856 + FRAM SINE Alu 39 157 -19 235 180 80 0 chr11 113742868 113742918 -37040635 - L1MC/D LINE L1 -2163 5645 5592 262 258 0 0 chr11 113743665 113743731 -37039822 + CT-rich Low_complexity Low_complexity 1 66 0 422 353 77 21 chr11 113744009 113744244 -37039309 - MIR SINE MIR -12 250 3 963 186 5 38 chr11 113744661 113744871 -37038682 + MER3 DNA MER1_type 1 203 -6 191 339 17 0 chr11 113745124 113745183 -37038370 + L2 LINE L2 3254 3313 0 408 20 0 0 chr11 113745647 113745696 -37037857 + (TG)n Simple_repeat Simple_repeat 2 50 0 397 336 175 38 chr11 113746289 113747110 -37036443 + L2 LINE L2 1964 2897 -417 25 0 0 0 chr11 113747915 113747940 -37035613 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr11 113748353 113748378 -37035175 + AT_rich Low_complexity Low_complexity 1 25 0 30 27 0 0 chr11 113749346 113749383 -37034170 + AT_rich Low_complexity Low_complexity 1 37 0 1880 141 14 7 chr11 113750097 113750380 -37033173 + AluSx SINE Alu 1 285 -27 285 29 0 0 chr11 113750380 113750414 -37033139 + (CA)n Simple_repeat Simple_repeat 2 35 0 616 176 50 8 chr11 113750692 113750811 -37032742 - MER94 DNA DNA -4 130 7 782 221 29 6 chr11 113751271 113751443 -37032110 - MIR SINE MIR -67 195 20 324 0 0 0 chr11 113751452 113751488 -37032065 + (TG)n Simple_repeat Simple_repeat 2 37 0 185 400 21 14 chr11 113751714 113751859 -37031694 + L2 LINE L2 2241 2386 -928 617 375 57 39 chr11 113752247 113752887 -37030666 + L2 LINE L2 2355 3007 -265 23 0 0 0 chr11 113753365 113753388 -37030165 + AT_rich Low_complexity Low_complexity 1 23 0 562 296 11 17 chr11 113753594 113753770 -37029783 + MER97b DNA MER1_type? 3 177 -876 472 168 0 96 chr11 113753851 113753976 -37029577 - MER44D DNA MER2_type 0 609 497 1435 128 35 23 chr11 113754021 113754278 -37029275 - MER44D DNA MER2_type -79 530 1 1908 93 16 0 chr11 113754544 113754792 -37028761 - AluSc SINE Alu -21 288 37 492 18 0 0 chr11 113755066 113755123 -37028430 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 296 305 99 0 chr11 113755646 113755777 -37027776 + MIR SINE MIR 11 154 -108 222 269 151 54 chr11 113755788 113755881 -37027672 - L2 LINE L2 -42 3271 3170 34 24 0 0 chr11 113756291 113756332 -37027221 + AT_rich Low_complexity Low_complexity 1 41 0 291 210 17 30 chr11 113756373 113756682 -37026871 + (TA)n Simple_repeat Simple_repeat 1 304 0 * 305 140 18 0 chr11 113756661 113756718 -37026835 + (CA)n Simple_repeat Simple_repeat 2 59 0 22 35 0 0 chr11 113757008 113757037 -37026516 + AT_rich Low_complexity Low_complexity 1 29 0 2361 162 22 20 chr11 113757243 113757644 -37025909 - MER68 LTR ERV1 -160 402 1 739 220 156 11 chr11 113759295 113759481 -37024072 + MER20 DNA MER1_type 6 218 -1 27 0 0 0 chr11 113761012 113761039 -37022514 + AT_rich Low_complexity Low_complexity 1 27 0 785 231 77 8 chr11 113761162 113761396 -37022157 - L1ME3A LINE L1 -1 6169 5920 987 248 38 34 chr11 113761396 113761864 -37021689 + MER90 LTR ERV1 1 550 -64 526 239 113 9 chr11 113761938 113762160 -37021393 - L1M4 LINE L1 -2712 3434 3190 * 790 196 51 28 chr11 113762156 113762370 -37021183 - L1PA16 LINE L1 -7 6159 5941 * 1437 262 143 12 chr11 113762368 113763205 -37020348 - L1M4 LINE L1 -2940 3206 2260 4378 178 45 36 chr11 113763227 113763720 -37019833 - L1MA9 LINE L1 -38 6274 5787 1471 210 0 43 chr11 113763720 113764044 -37019509 - AluJo SINE Alu -2 310 1 4378 178 45 36 chr11 113764044 113764625 -37018928 - L1MA9 LINE L1 -525 5787 5185 333 194 14 0 chr11 113766272 113766344 -37017209 - L1MB8 LINE L1 -5 6173 6101 1086 160 34 5 chr11 113766346 113766552 -37017001 - L1M4 LINE L1 -538 5636 5425 2287 103 0 3 chr11 113766569 113766880 -37016673 - AluSg SINE Alu 0 310 1 21 57 0 0 chr11 113766929 113766964 -37016589 + AT_rich Low_complexity Low_complexity 1 35 0 1947 177 0 34 chr11 113768816 113769194 -37014359 + MLT1A1 LTR MaLR 1 365 0 24 0 0 0 chr11 113769625 113769649 -37013904 + AT_rich Low_complexity Low_complexity 1 24 0 315 277 78 57 chr11 113769779 113769920 -37013633 - L1ME4a LINE L1 0 6121 5978 1083 276 176 7 chr11 113770173 113770600 -37012953 - MLT1G LTR MaLR 0 590 92 26 0 0 0 chr11 113771356 113771382 -37012171 + AT_rich Low_complexity Low_complexity 1 26 0 782 202 104 33 chr11 113772080 113772263 -37011290 - MER20 DNA MER1_type -1 218 23 1972 141 3 0 chr11 113772429 113772728 -37010825 - AluSx SINE Alu -12 300 1 21 0 0 0 chr11 113772730 113772751 -37010802 + AT_rich Low_complexity Low_complexity 1 21 0 23473 99 11 21 chr11 113772962 113776845 -37006708 + L1PA8 LINE L1 763 4621 -1840 2485 94 3 8 chr11 113776845 113777203 -37006350 + L1PA8 LINE L1 6129 6487 0 8529 213 68 35 chr11 113777203 113779184 -37004369 - L1PA13 LINE L1 -4741 2046 1 242 330 41 10 chr11 113779238 113779335 -37004218 + MIR3 SINE MIR 103 202 -6 22 35 0 0 chr11 113779620 113779649 -37003904 + AT_rich Low_complexity Low_complexity 1 29 0 496 313 62 48 chr11 113779651 113780131 -37003422 - L1MC4a LINE L1 -1899 5909 5423 28 0 0 0 chr11 113780522 113780550 -37003003 + AT_rich Low_complexity Low_complexity 1 28 0 2148 118 7 0 chr11 113781723 113782019 -37001534 + AluSx SINE Alu 1 298 -14 957 114 0 161 chr11 113782071 113782307 -37001246 - Tigger7 DNA MER2_type 0 2487 2290 1381 191 32 20 chr11 113782324 113782387 -37001166 - Tigger7 DNA MER2_type -164 2423 2362 225 0 0 0 chr11 113782387 113782412 -37001141 + (TC)n Simple_repeat Simple_repeat 1 25 0 1381 191 32 20 chr11 113782412 113782691 -37000862 - Tigger7 DNA MER2_type -225 2362 30 207 239 43 0 chr11 113783487 113783533 -37000020 - MIR SINE MIR -49 213 166 6623 34 0 0 chr11 113783592 113784406 -36999147 + L1PA5 LINE L1 5352 6165 0 245 186 34 0 chr11 113784929 113784988 -36998565 + CT-rich Low_complexity Low_complexity 4 64 0 1721 182 10 0 chr11 113784990 113785298 -36998255 - AluJb SINE Alu -1 311 1 237 170 0 0 chr11 113785932 113785979 -36997574 + LTR66 LTR ERVL 395 441 -169 806 220 6 17 chr11 113786023 113786200 -36997353 + FRAM SINE Alu 1 175 -1 21 71 0 0 chr11 113786326 113786368 -36997185 + AT_rich Low_complexity Low_complexity 1 42 0 2137 92 3 0 chr11 113786622 113786928 -36996625 + AluSx SINE Alu 1 307 0 5187 152 23 32 chr11 113786981 113787944 -36995609 - L1MC1 LINE L1 0 6333 5380 281 205 173 32 chr11 113788334 113788490 -36995063 - L1ME4a LINE L1 -18 6103 5926 226 307 94 8 chr11 113788649 113788776 -36994777 - L1ME4a LINE L1 -463 5658 5521 638 341 16 0 chr11 113789292 113789541 -36994012 - L1MEd LINE L1 -5284 835 583 244 258 124 10 chr11 113789816 113789913 -36993640 - L1MEd LINE L1 -5874 245 138 713 279 1 56 chr11 113790121 113790369 -36993184 - MIR SINE MIR -1 261 27 2155 116 0 7 chr11 113790373 113790676 -36992877 - AluSq SINE Alu -12 301 1 182 333 29 0 chr11 113790722 113790791 -36992762 - L2 LINE L2 -27 3245 3175 22 56 0 0 chr11 113791014 113791050 -36992503 + AT_rich Low_complexity Low_complexity 1 36 0 218 222 0 19 chr11 113791331 113791385 -36992168 + CT-rich Low_complexity Low_complexity 2 54 0 21 36 0 0 chr11 113794521 113794549 -36989004 + AT_rich Low_complexity Low_complexity 1 28 0 756 269 40 4 chr11 113795365 113795614 -36987939 - MIR SINE MIR -3 259 2 2285 152 44 18 chr11 113795748 113796182 -36987371 + MER31A LTR ERV1 11 455 -30 1348 175 41 120 chr11 113796976 113797222 -36986331 - MER31B LTR ERV1 -82 384 183 2371 86 3 10 chr11 113797222 113797535 -36986018 - AluSx SINE Alu -1 311 1 1348 175 41 120 chr11 113797535 113797705 -36985848 - MER31B LTR ERV1 -283 183 1 742 164 8 0 chr11 113798830 113798952 -36984601 + FRAM SINE Alu 24 146 -30 1419 179 19 20 chr11 113799602 113800090 -36983463 - LTR8 LTR ERV1 0 691 153 2785 162 62 95 chr11 113800102 113800377 -36983176 + LTR8 LTR ERV1 2 284 -407 1456 151 21 104 chr11 113800377 113800715 -36982838 + AluYb8 SINE Alu 3 312 -6 2785 162 62 95 chr11 113800715 113801144 -36982409 + LTR8 LTR ERV1 284 683 -8 851 128 0 70 chr11 113801151 113801307 -36982246 - LTR8 LTR ERV1 -546 145 1 1589 198 0 0 chr11 113801310 113801588 -36981965 + AluJo SINE Alu 22 299 -13 667 265 65 0 chr11 113801643 113801843 -36981710 + MLT1C LTR MaLR 101 313 -154 839 128 21 86 chr11 113801847 113802034 -36981519 - MLT1C LTR MaLR -292 175 1 516 196 15 132 chr11 113802283 113802487 -36981066 - MLT1K LTR MaLR -15 573 394 245 241 0 0 chr11 113802498 113802552 -36981001 + CT-rich Low_complexity Low_complexity 2 55 0 1943 128 3 3 chr11 113802966 113803277 -36980276 + AluSx SINE Alu 1 311 0 9372 202 38 35 chr11 113803335 113804344 -36979209 - L1 LINE L1 -3466 4099 3095 1670 166 85 73 chr11 113804344 113804767 -36978786 + MSTA LTR MaLR 1 428 0 9372 202 38 35 chr11 113804767 113805605 -36977948 - L1 LINE L1 -4470 3095 2261 1941 109 25 11 chr11 113805605 113805890 -36977663 + AluSq SINE Alu 1 289 -24 9372 202 38 35 chr11 113805890 113807104 -36976449 - L1 LINE L1 -5304 2261 355 605 234 15 54 chr11 113807108 113807313 -36976240 + LTR4 LTR ERV1 4 200 -396 944 234 29 22 chr11 113807502 113807780 -36975773 + LTR4 LTR ERV1 317 596 0 1487 187 77 18 chr11 113807780 113808106 -36975447 - L1 LINE L1 -7209 356 12 772 294 169 82 chr11 113808338 113809204 -36974349 + L2 LINE L2 1403 2447 -867 1793 161 68 0 chr11 113809204 113809526 -36974027 - MER7A DNA MER2_type 0 346 5 772 294 169 82 chr11 113809526 113810099 -36973454 + L2 LINE L2 2447 2968 -346 1235 224 203 76 chr11 113811147 113811673 -36971880 - MLT1E2 LTR MaLR -31 593 1 244 313 15 15 chr11 113812540 113812607 -36970946 - L2 LINE L2 -52 3220 3154 26 30 0 0 chr11 113812718 113812751 -36970802 + AT_rich Low_complexity Low_complexity 1 33 0 306 252 223 38 chr11 113812766 113813210 -36970343 - L1ME4a LINE L1 -21 6100 5575 370 370 36 0 chr11 113814008 113814173 -36969380 + MIR SINE MIR 79 249 -13 302 320 0 0 chr11 113814228 113814306 -36969247 - MIR SINE MIR -113 149 72 438 259 42 21 chr11 113814610 113814753 -36968800 + MIR SINE MIR 117 262 0 22 70 0 0 chr11 113814819 113814862 -36968691 + AT_rich Low_complexity Low_complexity 1 43 0 32 0 0 0 chr11 113814871 113814903 -36968650 + AT_rich Low_complexity Low_complexity 1 32 0 1939 187 53 61 chr11 113815149 113815658 -36967895 + MLT1D LTR MaLR 1 505 0 333 280 76 0 chr11 113816040 113816172 -36967381 + MER91B DNA MER1_type 1 142 -48 23 33 0 0 chr11 113816649 113816679 -36966874 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr11 113817374 113817395 -36966158 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 2055 134 0 3 chr11 113817733 113818024 -36965529 - AluSx SINE Alu -22 290 1 26 0 0 0 chr11 113818184 113818210 -36965343 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 113818535 113818557 -36964996 + AT_rich Low_complexity Low_complexity 1 22 0 214 371 109 71 chr11 113818605 113818955 -36964598 - L2 LINE L2 0 3272 2910 522 285 232 0 chr11 113819155 113819362 -36964191 - MIR SINE MIR 0 262 8 2300 94 0 3 chr11 113819829 113820127 -36963426 - AluSq SINE Alu -16 297 1 198 256 0 0 chr11 113820170 113820213 -36963340 + MIR SINE MIR 220 262 0 228 88 29 0 chr11 113820490 113820524 -36963029 + MADE1 DNA Mariner 44 78 -2 2199 101 53 28 chr11 113820636 113820991 -36962562 - THE1B LTR MaLR 0 364 1 314 223 10 68 chr11 113821775 113821878 -36961675 - MLT1K LTR MaLR 0 588 492 191 86 0 29 chr11 113822079 113822114 -36961439 + (TA)n Simple_repeat Simple_repeat 2 35 0 216 0 0 0 chr11 113822116 113822140 -36961413 + (CA)n Simple_repeat Simple_repeat 2 25 0 419 342 63 1 chr11 113824187 113824379 -36959174 - MIR SINE MIR -32 230 26 2272 140 2 34 chr11 113824545 113824960 -36958593 - L1MA4 LINE L1 -5 6295 5894 1177 115 0 0 chr11 113825060 113825216 -36958337 - AluSg/x SINE Alu -13 297 142 2389 82 3 0 chr11 113825216 113825520 -36958033 - AluSp SINE Alu -8 305 1 21 0 0 0 chr11 113826402 113826423 -36957130 + AT_rich Low_complexity Low_complexity 1 21 0 1918 117 6 69 chr11 113826617 113826950 -36956603 + AluSx SINE Alu 1 312 0 4302 156 65 18 chr11 113827473 113828418 -36955135 - L1MB2 LINE L1 0 6171 5178 1720 154 6 71 chr11 113828614 113828939 -36954614 - AluJo SINE Alu -6 306 3 189 356 67 19 chr11 113829160 113829264 -36954289 + L2 LINE L2 3149 3257 -15 21 36 0 0 chr11 113829516 113829544 -36954009 + AT_rich Low_complexity Low_complexity 1 28 0 204 228 0 89 chr11 113829637 113829738 -36953815 + T-rich Low_complexity Low_complexity 4 95 0 1825 129 6 69 chr11 113830114 113830447 -36953106 - AluSx SINE Alu 0 312 1 1362 199 17 40 chr11 113830709 113831006 -36952547 - L1M1 LINE L1 -7257 308 19 4755 176 41 25 chr11 113831012 113832430 -36951123 + L1MA6 LINE L1 4845 6285 -15 628 292 110 5 chr11 113833092 113833311 -36950242 - MIR SINE MIR 0 262 21 21 71 0 0 chr11 113833396 113833438 -36950115 + AT_rich Low_complexity Low_complexity 1 42 0 2181 108 3 3 chr11 113834523 113834819 -36948734 - AluSp SINE Alu -15 298 3 1199 241 14 55 chr11 113835171 113835586 -36947967 + L1MDb LINE L1 774 1171 -5238 42219 52 5 1 chr11 113836189 113842323 -36941230 + L1PA4 LINE L1 2 6155 0 1852 241 94 23 chr11 113842759 113843331 -36940222 + LTR68 LTR ERV1 1 613 -127 520 239 92 42 chr11 113843381 113843641 -36939912 + L1MDb LINE L1 1250 1522 -4874 24 53 0 0 chr11 113844307 113844345 -36939208 + AT_rich Low_complexity Low_complexity 1 38 0 319 254 127 14 chr11 113844389 113844609 -36938944 + L1MDb LINE L1 2469 2713 -3693 471 254 140 43 chr11 113844709 113845049 -36938504 + L1MDb LINE L1 2926 3302 -3104 2376 84 0 3 chr11 113845049 113845348 -36938205 + AluY SINE Alu 1 298 -13 347 263 113 0 chr11 113845485 113845618 -36937935 + LTR50 LTR ERVL 58 205 -590 621 255 162 20 chr11 113845689 113845991 -36937562 + LTR50 LTR ERVL 437 781 -14 2223 90 0 0 chr11 113847080 113847358 -36936195 + AluSg1 SINE Alu 5 282 -27 203 0 37 0 chr11 113847367 113847394 -36936159 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 217 284 112 37 chr11 113847910 113847961 -36935592 + L2 LINE L2 2948 2994 -278 1792 161 3 7 chr11 113847961 113848260 -36935293 + AluSx SINE Alu 1 298 -14 217 284 112 37 chr11 113848260 113848342 -36935211 + L2 LINE L2 2994 3091 -181 232 324 0 0 chr11 113848416 113848484 -36935069 + L2 LINE L2 3245 3312 -1 317 137 78 0 chr11 113848573 113848624 -36934929 + HY1 scRNA scRNA 1 55 -57 252 320 137 35 chr11 113849835 113850119 -36933434 + HAL1 LINE L1 1350 1662 -845 21 36 0 0 chr11 113850651 113850679 -36932874 + AT_rich Low_complexity Low_complexity 1 28 0 2002 122 11 3 chr11 113850786 113851073 -36932480 + AluSx SINE Alu 1 289 -23 23 54 0 0 chr11 113851313 113851350 -36932203 + AT_rich Low_complexity Low_complexity 1 37 0 2526 195 58 14 chr11 113851384 113852020 -36931533 + L1M2 LINE L1 1931 2594 -4255 463 271 115 22 chr11 113852023 113852529 -36931024 + L1M1 LINE L1 3035 3589 -3976 2007 137 50 19 chr11 113852529 113852893 -36930660 - THE1C LTR MaLR 0 375 1 10046 112 48 4 chr11 113852893 113854407 -36929146 - THE1C-int LTR MaLR 0 1580 1 455 134 0 0 chr11 113854407 113854474 -36929079 - THE1C LTR MaLR 0 428 362 1262 122 24 24 chr11 113854476 113854681 -36928872 - THE1C LTR MaLR -170 205 1 2392 226 71 11 chr11 113854684 113855389 -36928164 + L1M1 LINE L1 3588 4334 -3231 * 3871 235 36 69 chr11 113855375 113855588 -36927965 + L1M1 LINE L1 4642 4860 -2705 1624 191 33 0 chr11 113855588 113855861 -36927692 + AluJb SINE Alu 1 282 -30 186 43 0 0 chr11 113855864 113855887 -36927666 + (CA)n Simple_repeat Simple_repeat 2 24 0 3871 235 36 69 chr11 113855887 113856504 -36927049 + L1M1 LINE L1 4862 5461 -2104 238 61 0 0 chr11 113856504 113856537 -36927016 + Alu SINE Alu 1 33 -270 3871 235 36 69 chr11 113856537 113856861 -36926692 + L1M1 LINE L1 5461 5794 -1771 * 14493 155 27 4 chr11 113856860 113859243 -36924310 - L1M1 LINE L1 -4648 2917 480 180 0 0 0 chr11 113859506 113859526 -36924027 + (A)n Simple_repeat Simple_repeat 1 20 0 225 0 0 0 chr11 113859666 113859691 -36923862 + (A)n Simple_repeat Simple_repeat 1 25 0 208 304 89 0 chr11 113859751 113859830 -36923723 + L2 LINE L2 2223 2308 -1006 585 319 222 15 chr11 113859915 113860388 -36923165 + L2 LINE L2 2324 2894 -420 653 330 43 9 chr11 113860682 113860912 -36922641 + MIR SINE MIR 20 257 -5 490 288 88 45 chr11 113861350 113861770 -36921783 - L1MC4a LINE L1 -1833 5975 5538 342 348 43 0 chr11 113862222 113862360 -36921193 + L2 LINE L2 2205 2348 -966 286 297 42 42 chr11 113862369 113862487 -36921066 + L2 LINE L2 3189 3306 -7 320 323 34 53 chr11 113862522 113862788 -36920765 + L2 LINE L2 2354 2614 -700 384 270 87 71 chr11 113862824 113863020 -36920533 + L2 LINE L2 3115 3313 0 21 57 0 0 chr11 113863756 113863791 -36919762 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr11 113863858 113863879 -36919674 + AT_rich Low_complexity Low_complexity 1 21 0 620 298 92 88 chr11 113864305 113865147 -36918406 + L2 LINE L2 2316 3298 -15 27 29 0 0 chr11 113865230 113865264 -36918289 + AT_rich Low_complexity Low_complexity 1 34 0 1592 242 97 44 chr11 113865265 113865831 -36917722 - L1ME3A LINE L1 -7 6163 5568 329 214 70 134 chr11 113865869 113866056 -36917497 - L1ME3A LINE L1 -27 6143 5969 190 346 79 10 chr11 113866146 113866247 -36917306 - MIR SINE MIR -39 223 116 403 242 40 91 chr11 113866510 113866708 -36916845 + MIR SINE MIR 75 262 0 1612 96 9 0 chr11 113867333 113867551 -36916002 + AluSg/x SINE Alu 87 306 -4 350 274 84 56 chr11 113867803 113867982 -36915571 + MIR SINE MIR 33 216 -46 326 259 183 38 chr11 113869239 113869370 -36914183 - L2 LINE L2 0 3313 3164 815 236 48 20 chr11 113869446 113869696 -36913857 - L1ME3A LINE L1 -13 6157 5901 267 246 31 0 chr11 113869953 113870018 -36913535 + (CATA)n Simple_repeat Simple_repeat 2 68 0 210 37 0 0 chr11 113870587 113870614 -36912939 + (TA)n Simple_repeat Simple_repeat 1 27 0 25 0 0 0 chr11 113871251 113871276 -36912277 + AT_rich Low_complexity Low_complexity 1 25 0 5764 109 13 11 chr11 113871288 113872704 -36910849 - L1PA15 LINE L1 0 6165 4785 1248 302 34 29 chr11 113872736 113873348 -36910205 - L1PA12 LINE L1 -4785 2796 2182 301 216 31 21 chr11 113873591 113873688 -36909865 - L1PA12 LINE L1 -5399 2182 2085 1128 318 31 34 chr11 113873793 113874407 -36909146 - L1PA12 LINE L1 -6175 1399 788 304 207 0 0 chr11 113875059 113875117 -36908436 + LTR65 LTR ERV1 338 395 -274 297 266 95 43 chr11 113878074 113878258 -36905295 + L1MCc LINE L1 35 563 -5859 1179 239 73 36 chr11 113878586 113878903 -36904650 + L1MCc LINE L1 1123 1427 -5204 2213 80 3 26 chr11 113878903 113879205 -36904348 + AluY SINE Alu 1 295 -16 1179 239 73 36 chr11 113879205 113879485 -36904068 + L1MCc LINE L1 1427 1744 -4887 367 228 111 111 chr11 113879519 113879843 -36903710 + L1MCc LINE L1 1871 2632 -4310 396 145 0 0 chr11 113879843 113879905 -36903648 + AluS SINE Alu 1 62 -238 2256 88 0 3 chr11 113880928 113881234 -36902319 - AluSx SINE Alu 0 305 1 291 54 0 0 chr11 113881632 113881669 -36901884 + (A)n Simple_repeat Simple_repeat 1 37 0 804 315 65 19 chr11 113881769 113882182 -36901371 + L2 LINE L2 1618 2049 -1265 772 307 140 36 chr11 113882274 113882491 -36901062 + L2 LINE L2 2550 2743 -570 2089 178 0 14 chr11 113882491 113882861 -36900692 - MLT1A1 LTR MaLR 0 365 1 772 307 140 36 chr11 113882861 113883336 -36900217 + L2 LINE L2 2743 3311 -2 619 196 101 119 chr11 113883466 113883685 -36899868 - MIR SINE MIR -20 242 28 2189 132 0 0 chr11 113884017 113884327 -36899226 + AluSx SINE Alu 1 310 -2 1915 147 11 0 chr11 113886025 113886310 -36897243 - AluJo SINE Alu -23 289 2 1388 231 20 14 chr11 113887972 113888266 -36895287 + AluJo SINE Alu 1 296 -16 408 282 45 38 chr11 113888895 113889195 -36894358 + L1ME1 LINE L1 1048 1383 -4862 2260 111 0 0 chr11 113889779 113890085 -36893468 - AluSg SINE Alu -4 306 1 425 39 0 0 chr11 113890412 113890464 -36893089 - MADE1 DNA Mariner -28 52 1 474 274 124 66 chr11 113890493 113890684 -36892869 + L1ME1 LINE L1 2473 2652 -3477 4407 99 16 0 chr11 113890684 113891300 -36892253 - L1PA10 LINE L1 -17 6151 5526 474 274 124 66 chr11 113891300 113892284 -36891269 + L1ME1 LINE L1 2652 3716 -2413 600 257 74 25 chr11 113892476 113892678 -36890875 + MLT1H LTR MaLR 3 214 -335 279 269 143 25 chr11 113892741 113892955 -36890598 + MLT1H LTR MaLR 265 525 -24 1429 219 29 53 chr11 113893047 113893422 -36890131 + MLT1B LTR MaLR 25 390 0 292 307 63 21 chr11 113893425 113893614 -36889939 + L1ME1 LINE L1 3978 4174 -1955 26 30 0 0 chr11 113894678 113894711 -36888842 + AT_rich Low_complexity Low_complexity 1 33 0 1779 258 26 33 chr11 113894711 113894877 -36888676 + L1ME1 LINE L1 5544 5710 -439 2511 105 16 5 chr11 113894877 113895248 -36888305 - THE1C LTR MaLR 0 375 1 1779 258 26 33 chr11 113895248 113895686 -36887867 + L1ME1 LINE L1 5710 6144 -5 22 35 0 0 chr11 113896300 113896329 -36887224 + AT_rich Low_complexity Low_complexity 1 29 0 788 283 84 20 chr11 113896396 113897032 -36886521 - L1MC5 LINE L1 -99 7862 7246 455 270 32 10 chr11 113897059 113897293 -36886260 - L1MC4 LINE L1 -737 7224 7012 313 266 39 47 chr11 113898139 113898354 -36885199 + L2 LINE L2 2613 2898 -416 521 312 131 41 chr11 113898354 113898796 -36884757 + L1MB3 LINE L1 5346 5827 -356 * 762 238 43 40 chr11 113898583 113898908 -36884645 + L1ME3 LINE L1 5619 5948 -222 605 318 104 11 chr11 113899282 113899640 -36883913 - L2 LINE L2 -192 3121 2741 198 0 0 0 chr11 113900241 113900263 -36883290 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 276 171 0 0 chr11 113900267 113900308 -36883245 - AluJb SINE Alu -22 280 240 4970 117 12 20 chr11 113900314 113901075 -36882478 - HERV9 LTR ERV1 -7591 808 54 2290 125 22 116 chr11 113901051 113901214 -36882339 - LTR12 LTR ERV1 -236 478 301 * 2099 66 0 8 chr11 113901214 113901473 -36882080 + AluY SINE Alu 37 293 -18 2290 125 22 116 chr11 113901473 113901830 -36881723 - LTR12 LTR ERV1 -413 301 53 282 211 0 0 chr11 113901830 113901882 -36881671 - LTR30 LTR ERV1 -670 52 1 969 186 0 0 chr11 113901882 113902038 -36881515 - AluJb SINE Alu -71 241 86 426 353 29 18 chr11 113902370 113902540 -36881013 - MER5A DNA MER1_type -11 178 7 3839 255 36 29 chr11 113903720 113905445 -36878108 + L1M1 LINE L1 10 2429 -5136 4411 162 27 8 chr11 113905445 113906566 -36876987 + L1M1 LINE L1 4479 5629 -671 3026 129 38 10 chr11 113906566 113907063 -36876490 - MER9 LTR ERVK 0 511 1 4411 162 27 8 chr11 113907063 113907146 -36876407 + L1M1 LINE L1 5629 5709 -591 509 103 0 0 chr11 113907140 113907208 -36876345 + L1M1 LINE L1 5623 5690 -614 * 742 164 8 0 chr11 113959067 113959189 -36824364 - FRAM SINE Alu -30 146 24 35242 55 7 1 chr11 113959393 113963895 -36819658 - L1P LINE L1 -1619 4527 2 438 259 42 21 chr11 113964305 113964448 -36819105 + MIR SINE MIR 117 262 0 22 70 0 0 chr11 113964514 113964557 -36818996 + AT_rich Low_complexity Low_complexity 1 43 0 32 0 0 0 chr11 113964566 113964598 -36818955 + AT_rich Low_complexity Low_complexity 1 32 0 1939 187 53 61 chr11 113964844 113965353 -36818200 + MLT1D LTR MaLR 1 505 0 333 280 76 0 chr11 113965735 113965867 -36817686 + MER91B DNA MER1_type 1 142 -48 23 33 0 0 chr11 113966344 113966374 -36817179 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr11 113967069 113967090 -36816463 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 2055 134 0 3 chr11 113967428 113967719 -36815834 - AluSx SINE Alu -22 290 1 26 0 0 0 chr11 113967879 113967905 -36815648 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 113968230 113968252 -36815301 + AT_rich Low_complexity Low_complexity 1 22 0 214 371 109 71 chr11 113968300 113968650 -36814903 - L2 LINE L2 0 3272 2910 522 285 232 0 chr11 113968850 113969057 -36814496 - MIR SINE MIR 0 262 8 4291 155 65 18 chr11 113969534 113970479 -36813074 - L1MB2 LINE L1 0 6171 5178 1697 155 6 71 chr11 113970675 113970997 -36812556 - AluJo SINE Alu -9 303 3 189 356 67 19 chr11 113971218 113971322 -36812231 + L2 LINE L2 3149 3257 -15 21 36 0 0 chr11 113971574 113971602 -36811951 + AT_rich Low_complexity Low_complexity 1 28 0 408 289 95 41 chr11 113971610 113971925 -36811628 - L1M4 LINE L1 -2882 4683 4352 1904 120 6 65 chr11 113972172 113972497 -36811056 - AluSx SINE Alu -6 306 1 21 0 0 0 chr11 113972691 113972712 -36810841 + AT_rich Low_complexity Low_complexity 1 21 0 474 273 8 0 chr11 113973660 113973781 -36809772 + MLT1C LTR MaLR 192 313 -154 839 128 21 86 chr11 113973785 113973972 -36809581 - MLT1C LTR MaLR -292 175 1 511 176 25 142 chr11 113974221 113974425 -36809128 - MLT1K LTR MaLR -15 573 394 245 241 0 0 chr11 113974436 113974490 -36809063 + CT-rich Low_complexity Low_complexity 2 55 0 1919 131 3 3 chr11 113974904 113975215 -36808338 + AluSx SINE Alu 1 311 0 9372 202 39 37 chr11 113975273 113976282 -36807271 - L1M4 LINE L1 -3466 4099 3094 1662 166 85 73 chr11 113976282 113976705 -36806848 + MSTA LTR MaLR 1 428 0 9372 202 39 37 chr11 113976705 113977543 -36806010 - L1M4 LINE L1 -4471 3094 2260 1976 109 25 7 chr11 113977543 113977827 -36805726 + AluSq SINE Alu 1 289 -24 9372 202 39 37 chr11 113977827 113979041 -36804512 - L1M4 LINE L1 -5305 2260 355 605 234 15 54 chr11 113979045 113979250 -36804303 + LTR4 LTR ERV1 4 200 -396 944 234 29 22 chr11 113979439 113979717 -36803836 + LTR4 LTR ERV1 317 596 0 1487 187 77 18 chr11 113979717 113980043 -36803510 - L1M4 LINE L1 -7209 356 12 760 291 172 85 chr11 113980275 113981141 -36802412 + L2 LINE L2 1403 2447 -867 1793 161 68 0 chr11 113981141 113981463 -36802090 - MER7A DNA MER2_type 0 346 5 760 291 172 85 chr11 113981463 113982036 -36801517 + L2 LINE L2 2447 2968 -346 1235 224 203 76 chr11 113983084 113983610 -36799943 - MLT1E2 LTR MaLR -31 593 1 245 313 15 15 chr11 113984477 113984544 -36799009 - L2 LINE L2 -52 3220 3154 26 30 0 0 chr11 113984655 113984688 -36798865 + AT_rich Low_complexity Low_complexity 1 33 0 311 264 80 43 chr11 113984703 113984866 -36798687 - L1ME4a LINE L1 -21 6100 5932 246 278 75 27 chr11 113984960 113985147 -36798406 - L1ME4a LINE L1 -351 5770 5575 4344 209 131 30 chr11 113985424 113985721 -36797832 - L1ME4a LINE L1 -1771 4375 4109 1947 103 76 0 chr11 113985721 113986011 -36797542 - AluSx SINE Alu 0 312 1 4344 209 131 30 chr11 113986011 113986628 -36796925 - L1ME4a LINE L1 -2037 4109 3556 186 43 0 0 chr11 113986628 113986651 -36796902 + (TG)n Simple_repeat Simple_repeat 2 24 0 1611 194 33 0 chr11 113986654 113986927 -36796626 - AluJb SINE Alu -30 282 1 4344 209 131 30 chr11 113986927 113987820 -36795733 - L1ME4a LINE L1 -2591 3555 2168 1256 122 24 24 chr11 113987822 113988027 -36795526 + THE1C LTR MaLR 1 205 -170 440 149 0 0 chr11 113988029 113988096 -36795457 + THE1C LTR MaLR 362 428 0 10053 111 48 4 chr11 113988096 113989610 -36793943 + THE1C-int LTR MaLR 1 1580 0 2045 132 50 19 chr11 113989610 113989974 -36793579 + THE1C LTR MaLR 1 375 0 463 271 115 22 chr11 113989974 113990480 -36793073 - L1M1 LINE L1 -3976 3589 3035 2509 196 58 14 chr11 113990483 113991119 -36792434 - L1M2 LINE L1 -4255 2594 1931 23 54 0 0 chr11 113991153 113991190 -36792363 + AT_rich Low_complexity Low_complexity 1 37 0 2001 128 7 3 chr11 113991430 113991718 -36791835 - AluSx SINE Alu -23 289 1 232 324 137 35 chr11 113992388 113992672 -36790881 - HAL1 LINE L1 -845 1662 1350 317 137 78 0 chr11 113993883 113993934 -36789619 - HY1 scRNA scRNA -57 55 1 232 324 0 0 chr11 113994023 113994091 -36789462 - L2 LINE L2 -1 3312 3245 217 284 112 37 chr11 113994165 113994247 -36789306 - L2 LINE L2 -181 3091 2994 1792 161 3 7 chr11 113994247 113994546 -36789007 - AluSx SINE Alu -14 298 1 217 284 112 37 chr11 113994546 113994597 -36788956 - L2 LINE L2 -278 2994 2948 203 0 37 0 chr11 113995113 113995140 -36788413 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 2190 93 0 0 chr11 113995149 113995427 -36788126 - AluSg1 SINE Alu -27 282 5 621 255 162 20 chr11 113996517 113996819 -36786734 - LTR50 LTR ERVL -14 781 437 347 263 113 0 chr11 113996890 113997023 -36786530 - LTR50 LTR ERVL -590 205 58 2335 86 3 3 chr11 113997160 113997461 -36786092 - AluY SINE Alu -10 301 1 459 266 134 37 chr11 113997461 113997801 -36785752 - L1MEd LINE L1 -3104 4461 4085 304 259 127 14 chr11 113997901 113998121 -36785432 - L1MEd LINE L1 -3693 3872 3628 24 53 0 0 chr11 113998165 113998203 -36785350 + AT_rich Low_complexity Low_complexity 1 38 0 536 235 92 42 chr11 113998869 113999129 -36784424 - L1MEd LINE L1 -4874 2681 2409 1826 243 94 23 chr11 113999179 113999751 -36783802 - LTR68 LTR ERV1 -127 613 1 7413 42 0 1 chr11 114000187 114001598 -36781955 - L1PA4 LINE L1 0 6155 4746 243 0 0 0 chr11 114001698 114001725 -36781828 + (A)n Simple_repeat Simple_repeat 1 27 0 1436 175 17 17 chr11 114001728 114002025 -36781528 + L1MA6 LINE L1 4079 4375 -1771 * 16420 165 29 7 chr11 114002024 114004861 -36778692 - L1M4 LINE L1 -4648 2917 19 4767 176 41 25 chr11 114004867 114006285 -36777268 + L1MA6 LINE L1 4845 6285 -15 640 288 110 5 chr11 114006946 114007165 -36776388 - MIR SINE MIR 0 262 21 21 71 0 0 chr11 114007250 114007292 -36776261 + AT_rich Low_complexity Low_complexity 1 42 0 2190 108 3 3 chr11 114008377 114008674 -36774879 - AluSp SINE Alu -14 299 3 1214 237 17 56 chr11 114009026 114009440 -36774113 + L1ME1 LINE L1 774 1171 -5238 2247 88 0 3 chr11 114010700 114011006 -36772547 - AluSx SINE Alu 0 305 1 258 32 0 0 chr11 114011404 114011435 -36772118 + (A)n Simple_repeat Simple_repeat 1 31 0 779 317 65 19 chr11 114011535 114011948 -36771605 + L2 LINE L2 1618 2049 -1265 788 306 140 34 chr11 114012040 114012256 -36771297 + L2 LINE L2 2550 2742 -571 2140 173 0 14 chr11 114012256 114012626 -36770927 - MLT1A1 LTR MaLR 0 365 1 788 306 140 34 chr11 114012626 114013101 -36770452 + L2 LINE L2 2742 3311 -2 619 196 101 119 chr11 114013231 114013450 -36770103 - MIR SINE MIR -20 242 28 2211 129 0 0 chr11 114013782 114014093 -36769460 + AluSx SINE Alu 1 311 -1 1915 147 11 0 chr11 114015791 114016076 -36767477 - AluJo SINE Alu -23 289 2 1436 224 20 14 chr11 114017734 114018028 -36765525 + AluJo SINE Alu 1 296 -16 377 288 45 35 chr11 114018657 114018956 -36764597 + L1ME1 LINE L1 1325 1660 -4862 2264 112 0 0 chr11 114019541 114019846 -36763707 - AluSg SINE Alu -5 305 1 425 39 0 0 chr11 114020173 114020225 -36763328 - MADE1 DNA Mariner -28 52 1 4430 97 16 0 chr11 114020445 114021061 -36762492 - L1PA10 LINE L1 -17 6151 5526 559 278 129 56 chr11 114021065 114022045 -36761508 + L1ME1 LINE L1 2943 3993 -2413 600 257 74 25 chr11 114022237 114022439 -36761114 + MLT1H LTR MaLR 3 214 -335 279 260 154 27 chr11 114022490 114022716 -36760837 + MLT1H LTR MaLR 249 525 -24 1416 221 29 53 chr11 114022808 114023183 -36760370 + MLT1B LTR MaLR 25 390 0 313 302 63 21 chr11 114023186 114023375 -36760178 + L1ME1 LINE L1 4255 4451 -1955 26 30 0 0 chr11 114024439 114024472 -36759081 + AT_rich Low_complexity Low_complexity 1 33 0 1232 252 16 48 chr11 114024472 114024638 -36758915 + L1ME1 LINE L1 5821 5991 -435 2357 124 16 8 chr11 114024638 114025010 -36758543 - THE1C LTR MaLR 0 375 1 1232 252 16 48 chr11 114025010 114025284 -36758269 + L1ME1 LINE L1 5991 6247 -179 22 35 0 0 chr11 114025768 114025797 -36757756 + AT_rich Low_complexity Low_complexity 1 29 0 788 283 84 20 chr11 114025864 114026500 -36757053 - L1MC5 LINE L1 -99 7862 7246 455 272 32 10 chr11 114026527 114026761 -36756792 - L1MC4 LINE L1 -737 7224 7012 313 266 39 47 chr11 114027607 114027822 -36755731 + L2 LINE L2 2613 2898 -416 521 312 131 41 chr11 114027822 114028264 -36755289 + L1MB3 LINE L1 5346 5827 -356 * 762 238 43 40 chr11 114028051 114028376 -36755177 + L1ME3 LINE L1 5619 5948 -222 605 321 104 11 chr11 114028750 114029108 -36754445 - L2 LINE L2 -192 3121 2741 198 0 0 0 chr11 114029709 114029731 -36753822 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 276 171 0 0 chr11 114029735 114029776 -36753777 - AluJb SINE Alu -22 280 240 4959 118 12 20 chr11 114029782 114030543 -36753010 - HERV9 LTR ERV1 -7591 808 54 2275 127 22 116 chr11 114030519 114030682 -36752871 - LTR12 LTR ERV1 -236 478 301 * 2113 66 0 8 chr11 114030682 114030941 -36752612 + AluY SINE Alu 37 293 -18 2275 127 22 116 chr11 114030941 114031298 -36752255 - LTR12 LTR ERV1 -413 301 53 282 211 0 0 chr11 114031298 114031350 -36752203 - LTR30 LTR ERV1 -670 52 1 983 179 0 0 chr11 114031350 114031506 -36752047 - AluJb SINE Alu -71 241 86 426 353 29 18 chr11 114031838 114032008 -36751545 - MER5A DNA MER1_type -11 178 7 3839 256 36 29 chr11 114033190 114034915 -36748638 + L1M1 LINE L1 10 2429 -5136 4411 162 27 8 chr11 114034915 114036036 -36747517 + L1M1 LINE L1 4479 5629 -671 3012 131 38 10 chr11 114036036 114036533 -36747020 - MER9 LTR ERVK 0 511 1 4411 162 27 8 chr11 114036533 114036616 -36746937 + L1M1 LINE L1 5629 5709 -591 4055 137 1 23 chr11 114036616 114037298 -36746255 + L1MA4 LINE L1 5623 6295 -5 411 312 73 26 chr11 114037464 114037656 -36745897 + MIR SINE MIR 26 230 -32 252 0 0 0 chr11 114038470 114038498 -36745055 + (A)n Simple_repeat Simple_repeat 1 28 0 208 304 89 0 chr11 114038558 114038637 -36744916 + L2 LINE L2 2223 2308 -1006 585 319 222 15 chr11 114038722 114039195 -36744358 + L2 LINE L2 2324 2894 -420 665 326 43 9 chr11 114039489 114039719 -36743834 + MIR SINE MIR 20 257 -5 490 288 88 45 chr11 114040157 114040577 -36742976 - L1MC4a LINE L1 -1833 5975 5538 342 348 43 0 chr11 114041029 114041167 -36742386 + L2 LINE L2 2205 2348 -966 286 297 42 42 chr11 114041176 114041294 -36742259 + L2 LINE L2 3189 3306 -7 320 323 34 53 chr11 114041329 114041595 -36741958 + L2 LINE L2 2354 2614 -700 384 270 87 71 chr11 114041631 114041827 -36741726 + L2 LINE L2 3115 3313 0 21 57 0 0 chr11 114042563 114042598 -36740955 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr11 114042665 114042686 -36740867 + AT_rich Low_complexity Low_complexity 1 21 0 631 297 92 88 chr11 114043112 114043954 -36739599 + L2 LINE L2 2316 3298 -15 27 29 0 0 chr11 114044037 114044071 -36739482 + AT_rich Low_complexity Low_complexity 1 34 0 1592 242 97 44 chr11 114044072 114044638 -36738915 - L1ME3A LINE L1 -7 6163 5568 329 214 70 134 chr11 114044676 114044863 -36738690 - L1ME3A LINE L1 -27 6143 5969 190 346 79 10 chr11 114044953 114045054 -36738499 - MIR SINE MIR -39 223 116 403 242 40 91 chr11 114045317 114045515 -36738038 + MIR SINE MIR 75 262 0 1612 96 9 0 chr11 114046140 114046358 -36737195 + AluSg/x SINE Alu 87 306 -4 350 274 84 56 chr11 114046610 114046789 -36736764 + MIR SINE MIR 33 216 -46 319 239 144 84 chr11 114048046 114048213 -36735340 - L2 LINE L2 0 3313 3137 851 228 48 20 chr11 114048253 114048503 -36735050 - L1ME3A LINE L1 -13 6157 5901 267 246 31 0 chr11 114048760 114048825 -36734728 + (CATA)n Simple_repeat Simple_repeat 2 68 0 192 40 0 0 chr11 114049410 114049435 -36734118 + (TA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr11 114050071 114050096 -36733457 + AT_rich Low_complexity Low_complexity 1 25 0 5750 110 13 11 chr11 114050108 114051524 -36732029 - L1PA15 LINE L1 0 6165 4785 1248 302 34 29 chr11 114051556 114052168 -36731385 - L1PA12 LINE L1 -4785 2796 2182 301 216 31 21 chr11 114052411 114052508 -36731045 - L1PA12 LINE L1 -5399 2182 2085 1128 318 31 34 chr11 114052613 114053227 -36730326 - L1PA12 LINE L1 -6175 1399 788 304 207 0 0 chr11 114053879 114053937 -36729616 + LTR65 LTR ERV1 338 395 -274 2876 13 0 0 chr11 114056492 114056804 -36726749 - AluYb8 SINE Alu -6 312 1 320 259 95 43 chr11 114057217 114057401 -36726152 + L1MCc LINE L1 35 563 -5859 1179 239 73 36 chr11 114057729 114058046 -36725507 + L1MCc LINE L1 1123 1427 -5204 2227 76 3 26 chr11 114058046 114058348 -36725205 + AluY SINE Alu 1 295 -16 1179 239 73 36 chr11 114058348 114058628 -36724925 + L1MCc LINE L1 1427 1744 -4887 2378 88 0 0 chr11 114058799 114059094 -36724459 - AluSq SINE Alu -18 295 1 198 256 0 0 chr11 114059137 114059180 -36724373 + MIR SINE MIR 220 262 0 227 88 29 0 chr11 114059457 114059491 -36724062 - MADE1 DNA Mariner -43 37 3 2267 93 54 25 chr11 114059603 114059957 -36723596 - THE1B LTR MaLR 0 364 1 976 176 4 19 chr11 114060190 114060437 -36723116 - MER2 DNA MER2_type -4 341 41 334 214 10 68 chr11 114061062 114061165 -36722388 - MLT1K LTR MaLR 0 588 492 191 86 0 29 chr11 114061366 114061401 -36722152 + (TA)n Simple_repeat Simple_repeat 2 35 0 198 0 0 0 chr11 114061403 114061425 -36722128 + (CA)n Simple_repeat Simple_repeat 2 23 0 594 340 47 49 chr11 114061425 114061810 -36721743 - MLT1K LTR MaLR -188 400 17 1039 228 10 19 chr11 114062174 114062380 -36721173 + MER58A DNA MER1_type 2 205 -19 1912 152 41 16 chr11 114062668 114063079 -36720474 + L1PB4 LINE L1 5781 6200 0 1723 145 61 24 chr11 114063521 114063818 -36719735 + AluJb SINE Alu 1 308 -4 22 0 0 0 chr11 114064187 114064209 -36719344 + AT_rich Low_complexity Low_complexity 1 22 0 1987 136 0 41 chr11 114065047 114065364 -36718189 - AluSx SINE Alu -8 304 1 852 335 72 32 chr11 114065844 114066382 -36717171 - MLT1K LTR MaLR 0 588 29 500 285 67 6 chr11 114066976 114067141 -36716412 - MIR SINE MIR -46 216 42 789 252 89 24 chr11 114067443 114067689 -36715864 + MIR SINE MIR 1 262 0 22 0 0 0 chr11 114072999 114073021 -36710532 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 114077576 114077598 -36705955 + AT_rich Low_complexity Low_complexity 1 22 0 682 196 18 68 chr11 114078800 114078963 -36704590 + MER5A DNA MER1_type 2 156 -33 393 267 42 32 chr11 114079837 114080054 -36703499 + L1MEc LINE L1 1956 2174 -4222 * 562 248 6 0 chr11 114080042 114080199 -36703354 + L1MEc LINE L1 3326 3483 -2732 1711 91 0 0 chr11 114080210 114080419 -36703134 + AluSg SINE Alu 2 210 -100 7461 85 42 31 chr11 114080419 114080905 -36702648 + L1PA6 LINE L1 4156 4635 -1519 6664 62 25 1 chr11 114080905 114082175 -36701378 + L1PA6 LINE L1 4857 6143 -11 7461 85 42 31 chr11 114082175 114082979 -36700574 + L1PA6 LINE L1 4635 5461 -693 1943 107 0 77 chr11 114082979 114083279 -36700274 - AluSc SINE Alu -32 277 1 7461 85 42 31 chr11 114083279 114083309 -36700244 + L1PA6 LINE L1 5461 5489 -665 1326 254 135 58 chr11 114083297 114083475 -36700078 + L1MEc LINE L1 3732 3895 -2320 * 2185 119 0 0 chr11 114083475 114083769 -36699784 + AluSg SINE Alu 1 294 -16 1326 254 135 58 chr11 114083769 114084425 -36699128 + L1MEc LINE L1 3895 4631 -1584 * 3969 239 40 22 chr11 114084423 114085440 -36698113 + L1PA12 LINE L1 9 1044 -6537 15757 198 40 29 chr11 114085472 114089727 -36693826 + L1PA12 LINE L1 2383 6892 -757 795 195 4 87 chr11 114089717 114089958 -36693595 + L1ME1 LINE L1 4307 4527 -1619 * 792 201 49 16 chr11 114089954 114090138 -36693415 + L1MB7 LINE L1 5994 6183 -1 * 1231 212 117 28 chr11 114090132 114090524 -36693029 + L1ME1 LINE L1 5423 5849 -317 928 213 0 66 chr11 114090529 114090740 -36692813 + MER63B DNA MER1_type 1 197 -239 1695 178 0 10 chr11 114090799 114091103 -36692450 - AluJo SINE Alu -11 301 1 1176 205 65 56 chr11 114091119 114091456 -36692097 - MLT1A1 LTR MaLR -8 357 18 237 194 160 14 chr11 114091457 114091601 -36691952 + MER63B DNA MER1_type 233 397 -37 29 70 0 0 chr11 114091662 114091719 -36691834 + AT_rich Low_complexity Low_complexity 1 57 0 3123 121 36 6 chr11 114091749 114092245 -36691308 + MER9 LTR ERVK 1 511 0 21 36 0 0 chr11 114092345 114092373 -36691180 + AT_rich Low_complexity Low_complexity 1 28 0 1485 197 70 45 chr11 114093339 114093695 -36689858 - MLT1A1 LTR MaLR 0 365 1 217 203 16 16 chr11 114093792 114093856 -36689697 + (TA)n Simple_repeat Simple_repeat 1 64 0 364 113 122 0 chr11 114093856 114093933 -36689620 - MLT2B1 LTR ERVL -389 131 41 207 325 0 36 chr11 114094117 114094200 -36689353 - L2 LINE L2 -7 3306 3227 2395 155 18 2 chr11 114094318 114094756 -36688797 - L1MB2 LINE L1 0 6171 5727 2191 116 10 0 chr11 114094824 114095125 -36688428 + AluJb SINE Alu 1 304 -8 650 258 33 0 chr11 114096075 114096257 -36687296 + MIR SINE MIR 75 262 0 259 383 31 26 chr11 114096289 114096482 -36687071 + L2 LINE L2 2594 2787 -527 230 305 55 130 chr11 114096603 114096895 -36686658 + L2 LINE L2 2997 3266 -6 186 71 0 0 chr11 114097052 114097080 -36686473 + (A)n Simple_repeat Simple_repeat 1 28 0 854 277 26 26 chr11 114097233 114097361 -36686192 + MIR SINE MIR 26 156 -106 8600 115 20 6 chr11 114097361 114098630 -36684923 - HSMAR1 DNA Mariner 0 1287 1 854 277 26 26 chr11 114098630 114098732 -36684821 + MIR SINE MIR 155 256 -6 22 56 0 0 chr11 114098925 114098961 -36684592 + AT_rich Low_complexity Low_complexity 1 36 0 226 238 356 20 chr11 114099061 114099162 -36684391 + L2 LINE L2 3177 3311 -2 678 238 7 0 chr11 114099220 114099363 -36684190 - MLT1F LTR MaLR -4 538 395 257 140 20 20 chr11 114099406 114099456 -36684097 - MLT1G LTR MaLR -540 50 1 548 244 68 108 chr11 114099456 114099808 -36683745 - MLT1G1-int LTR MaLR 0 1371 1034 256 317 0 17 chr11 114100326 114100446 -36683107 - MLT1G1-int LTR MaLR -1613 122 5 602 238 124 40 chr11 114100455 114100872 -36682681 - MLT1G1 LTR MaLR -5 590 1 232 286 92 31 chr11 114100909 114101007 -36682546 + MIR3 SINE MIR 105 208 0 301 373 58 21 chr11 114102924 114103254 -36680299 + L2 LINE L2 1331 1672 -1642 31 0 0 0 chr11 114104039 114104070 -36679483 + AT_rich Low_complexity Low_complexity 1 31 0 183 100 0 0 chr11 114104525 114104555 -36678998 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 262 330 31 10 chr11 114104555 114104652 -36678901 - L2 LINE L2 -16 3256 3158 729 187 16 0 chr11 114104698 114104821 -36678732 + FLAM_A SINE Alu 1 125 -8 288 341 127 64 chr11 114104854 114105121 -36678432 - L2 LINE L2 -39 3233 2950 265 330 125 23 chr11 114105229 114105405 -36678148 - L2 LINE L2 -449 2865 2672 192 158 0 0 chr11 114105616 114105654 -36677899 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 1520 279 57 26 chr11 114106584 114107433 -36676120 + L2 LINE L2 2433 3313 0 218 333 0 0 chr11 114107790 114107838 -36675715 + L2 LINE L2 3205 3252 -20 548 235 33 39 chr11 114107992 114108145 -36675408 - L2 LINE L2 -1 3312 3161 28 48 0 0 chr11 114109349 114109391 -36674162 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr11 114109988 114110017 -36673536 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr11 114110056 114110095 -36673458 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr11 114110284 114110305 -36673248 + AT_rich Low_complexity Low_complexity 1 21 0 780 285 156 21 chr11 114110396 114110881 -36672672 - L2 LINE L2 -148 3165 2617 1728 270 140 76 chr11 114111305 114111485 -36672068 - L2 LINE L2 -685 2629 2462 2300 80 0 3 chr11 114111485 114111787 -36671766 - AluY SINE Alu -10 301 1 1728 270 140 76 chr11 114111787 114111873 -36671680 - L2 LINE L2 -852 2462 2383 234 0 0 0 chr11 114111873 114111899 -36671654 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1728 270 140 76 chr11 114111899 114112680 -36670873 - L2 LINE L2 -931 2383 1514 24 0 0 0 chr11 114112695 114112719 -36670834 + AT_rich Low_complexity Low_complexity 1 24 0 542 247 75 84 chr11 114114851 114115182 -36668371 - L2 LINE L2 -261 3052 2734 21 36 0 0 chr11 114115515 114115543 -36668010 + AT_rich Low_complexity Low_complexity 1 28 0 2661 221 49 23 chr11 114115708 114116504 -36667049 + L1M4 LINE L1 2161 2977 -3169 361 242 175 5 chr11 114116676 114116899 -36666654 - L1ME4a LINE L1 -105 6016 5756 320 240 47 54 chr11 114117105 114117155 -36666398 - L1ME4a LINE L1 -458 5663 5614 2426 88 0 0 chr11 114117155 114117462 -36666091 - AluSc SINE Alu -2 307 1 320 240 47 54 chr11 114117462 114117540 -36666013 - L1ME4a LINE L1 -507 5614 5536 357 334 96 30 chr11 114118229 114118531 -36665022 - HAL1b LINE L1 -574 774 453 182 324 28 14 chr11 114118761 114118832 -36664721 + MIR3 SINE MIR 137 208 0 207 0 0 0 chr11 114119447 114119470 -36664083 + (TA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr11 114119682 114119703 -36663850 + AT_rich Low_complexity Low_complexity 1 21 0 590 241 69 29 chr11 114120252 114120426 -36663127 + MIR SINE MIR 41 221 -41 821 193 76 15 chr11 114121379 114121576 -36661977 - MER3 DNA MER1_type 0 209 1 263 321 37 52 chr11 114121787 114121921 -36661632 - L2 LINE L2 -1 3312 3181 25 0 0 0 chr11 114121998 114122023 -36661530 + AT_rich Low_complexity Low_complexity 1 25 0 1461 123 9 33 chr11 114122511 114122815 -36660738 + Tigger4(Zombi) DNA MER2_type 1 2655 -76 3325 108 39 193 chr11 114122815 114123512 -36660041 + Tigger3b DNA MER2_type 2 460 -2569 512 200 0 0 chr11 114123512 114123597 -36659956 - AluJ/FLAM SINE Alu -227 85 1 3325 108 39 193 chr11 114123597 114124268 -36659285 + Tigger3b DNA MER2_type 460 1232 0 469 103 13 26 chr11 114124268 114124346 -36659207 + Tigger4(Zombi) DNA MER2_type 2655 2731 0 497 155 0 52 chr11 114124701 114124798 -36658755 - AluJ/FLAM SINE Alu -220 92 1 2812 7 0 0 chr11 114124849 114125158 -36658395 + AluYa5 SINE Alu 1 309 -2 256 299 93 10 chr11 114125191 114125288 -36658265 + L2 LINE L2 3116 3220 -93 2834 13 0 0 chr11 114125490 114125805 -36657748 + AluYb8 SINE Alu 1 315 -3 734 205 0 0 chr11 114125847 114125974 -36657579 - FLAM_A SINE Alu -6 127 1 301 200 44 0 chr11 114126471 114126561 -36656992 + (TA)n Simple_repeat Simple_repeat 2 95 0 250 228 0 18 chr11 114127384 114127441 -36656112 - Charlie5 DNA MER1_type -2543 69 14 362 265 112 69 chr11 114127652 114128172 -36655381 - L1MC5 LINE L1 -159 7802 7261 256 319 42 21 chr11 114128139 114128283 -36655270 - L1MC4a LINE L1 -421 7387 7241 * 334 234 91 38 chr11 114128273 114128473 -36655080 - L1MC4 LINE L1 -748 7213 7035 372 248 20 0 chr11 114128704 114128805 -36654748 - L1ME3A LINE L1 -12 6158 6056 1722 185 0 7 chr11 114129278 114129586 -36653967 + AluJb SINE Alu 1 306 -6 455 285 172 35 chr11 114130206 114130637 -36652916 + HAL1 LINE L1 1230 1719 -788 283 309 44 7 chr11 114131002 114131138 -36652415 + L1MC4a LINE L1 2151 2291 -3855 842 254 99 90 chr11 114131299 114131823 -36651730 - MLT1H LTR MaLR -6 543 15 762 307 78 34 chr11 114131856 114132868 -36650685 + L1MC4a LINE L1 4748 5602 -568 22 35 0 0 chr11 114133054 114133083 -36650470 + AT_rich Low_complexity Low_complexity 1 29 0 2216 71 0 0 chr11 114133320 114133642 -36649911 - AluY SINE Alu 0 322 1 407 328 56 20 chr11 114134779 114134977 -36648576 - MIR SINE MIR 0 262 58 194 321 25 0 chr11 114136134 114136215 -36647338 + L3 LINE CR1 1160 1242 -335 6343 28 14 0 chr11 114136227 114136985 -36646568 - L1PA4 LINE L1 0 6155 5387 579 260 73 46 chr11 114137174 114137393 -36646160 + MIR SINE MIR 13 237 -25 421 332 61 96 chr11 114137484 114138048 -36645505 - L2 LINE L2 -1 3271 2730 866 134 0 15 chr11 114138048 114138182 -36645371 + FLAM_C SINE Alu 1 132 -1 277 309 12 0 chr11 114138314 114138398 -36645155 - MIR SINE MIR -81 181 97 247 327 80 0 chr11 114138432 114138582 -36644971 - MIR SINE MIR 0 262 101 470 99 0 0 chr11 114139092 114139163 -36644390 - AluJ/FRAM SINE Alu -11 301 231 204 167 42 0 chr11 114140303 114140351 -36643202 + (CTTTG)n Simple_repeat Simple_repeat 5 54 0 1707 144 58 3 chr11 114140387 114140679 -36642874 + MER44D DNA MER2_type 32 609 0 192 297 144 9 chr11 114142817 114142928 -36640625 - MIR SINE MIR -51 211 86 236 292 75 42 chr11 114143074 114143194 -36640359 + MIR3 SINE MIR 63 186 -22 2365 211 132 68 chr11 114143251 114143356 -36640197 + L1MC5 LINE L1 6558 6655 -1306 2332 88 0 7 chr11 114143356 114143663 -36639890 + AluY SINE Alu 1 305 -6 2365 211 132 68 chr11 114143663 114144790 -36638763 + L1MC5 LINE L1 6655 7881 -80 22 35 0 0 chr11 114145529 114145558 -36637995 + AT_rich Low_complexity Low_complexity 1 29 0 1796 171 7 7 chr11 114145661 114145970 -36637583 - AluJb SINE Alu -3 309 1 34 84 0 0 chr11 114146206 114146289 -36637264 + AT_rich Low_complexity Low_complexity 1 83 0 673 235 63 18 chr11 114146327 114146529 -36637024 - MLT1J1 LTR MaLR -240 210 1 24 32 0 0 chr11 114147086 114147117 -36636436 + AT_rich Low_complexity Low_complexity 1 31 0 506 255 96 38 chr11 114147406 114147645 -36635908 + L1M4 LINE L1 3919 4171 -1975 573 269 73 21 chr11 114148293 114148527 -36635026 + MARNA DNA Mariner 281 526 -60 2495 70 0 3 chr11 114148547 114148859 -36634694 + AluY SINE Alu 1 311 0 619 274 24 47 chr11 114149881 114150232 -36633321 + MLT1J LTR MaLR 11 431 -80 273 237 51 59 chr11 114150367 114150485 -36633068 + HERVL68-B2 LTR ERVL 2588 2704 -333 331 215 0 0 chr11 114150771 114150836 -36632717 + HERVL68-B2 LTR ERVL 2723 2787 -250 2319 97 0 10 chr11 114150903 114151213 -36632340 + AluY SINE Alu 1 307 -4 424 276 77 61 chr11 114151213 114151474 -36632079 + L1ME4a LINE L1 5856 6120 -1 25 83 0 0 chr11 114152027 114152087 -36631466 + AT_rich Low_complexity Low_complexity 1 60 0 2628 179 51 6 chr11 114152944 114153398 -36630155 + MLT2B2 LTR ERVL 3 435 -80 387 0 0 0 chr11 114153398 114153441 -36630112 + (TC)n Simple_repeat Simple_repeat 2 44 0 297 0 0 0 chr11 114153440 114153473 -36630080 + (TA)n Simple_repeat Simple_repeat 2 34 0 * 2628 179 51 6 chr11 114153441 114153509 -36630044 + MLT2B2 LTR ERVL 435 515 0 3251 149 8 2 chr11 114153692 114154201 -36629352 + MER41E LTR ERV1 1 512 0 385 239 90 39 chr11 114154284 114154410 -36629143 - L1ME LINE L1 -371 5791 5654 2000 148 20 43 chr11 114154410 114154755 -36628798 + MER1B DNA MER1_type 1 337 0 385 239 90 39 chr11 114154755 114154783 -36628770 - L1ME LINE L1 -508 5654 5629 310 220 17 0 chr11 114154844 114154903 -36628650 + MIR SINE MIR 182 241 -21 341 250 207 0 chr11 114154926 114155090 -36628463 - L1ME LINE L1 -623 5561 5364 2841 144 12 26 chr11 114155095 114155742 -36627811 - LTR8A LTR ERV1 0 727 1 328 240 124 34 chr11 114155744 114155977 -36627576 - L1ME LINE L1 -786 5360 5107 305 339 12 54 chr11 114156150 114156318 -36627235 - LTR28 LTR ERV1 -3 1752 1592 2325 219 91 34 chr11 114156328 114157087 -36626466 - LTR28 LTR ERV1 -296 1459 45 1450 226 112 62 chr11 114157119 114157861 -36625692 - MER21B LTR ERV1 -11 852 5 656 254 73 29 chr11 114157945 114158220 -36625333 - MER34B LTR ERV1 0 565 279 1801 139 17 0 chr11 114158269 114158417 -36625136 + LTR8 LTR ERV1 1 145 -546 3007 173 38 67 chr11 114158417 114159129 -36624424 - LTR8 LTR ERV1 0 691 1 1801 139 17 0 chr11 114159129 114159268 -36624285 + LTR8 LTR ERV1 145 293 -398 2649 111 18 13 chr11 114159335 114159715 -36623838 + LTR8 LTR ERV1 310 691 0 1917 185 24 27 chr11 114159715 114159916 -36623637 + MER57A LTR ERV1 32 233 -170 633 218 75 7 chr11 114159916 114160063 -36623490 - FAM SINE Alu -18 157 1 1917 185 24 27 chr11 114160063 114160234 -36623319 + MER57A LTR ERV1 233 403 0 246 212 61 0 chr11 114160326 114160392 -36623161 + LTR1B LTR ERV1 33 102 -724 735 214 155 59 chr11 114160405 114160830 -36622723 + LTR1B LTR ERV1 33 498 -328 241 273 141 0 chr11 114161042 114161141 -36622412 - MER34B LTR ERV1 -448 117 5 783 238 136 73 chr11 114161450 114161972 -36621581 + LTR38B LTR ERV1 2 610 0 2633 130 26 2 chr11 114161990 114162413 -36621140 + L1PA13 LINE L1 5720 6152 -11 19444 167 57 14 chr11 114162556 114165580 -36617973 + L1MA2 LINE L1 15 3283 -4282 1557 191 14 25 chr11 114165580 114165863 -36617690 + AluJb SINE Alu 1 280 -32 19444 167 57 14 chr11 114165863 114167102 -36616451 + L1MA2 LINE L1 3283 4467 -3098 29379 97 13 3 chr11 114167129 114172281 -36611272 + L1PA7 LINE L1 952 6150 -4 10169 164 51 7 chr11 114172274 114175388 -36608165 + L1MA2 LINE L1 4466 7719 -4 * 30 27 0 0 chr11 114175388 114175425 -36608128 + AT_rich Low_complexity Low_complexity 1 37 0 312 326 15 0 chr11 114176374 114176509 -36607044 - L1 LINE L1 -1132 5014 4878 369 233 146 36 chr11 114176620 114176873 -36606680 - L1 LINE L1 -1481 4665 4385 7473 30 5 2 chr11 114176977 114177874 -36605679 - L1PA3 LINE L1 -3 6152 5254 874 235 28 20 chr11 114177955 114178210 -36605343 - L1ME1 LINE L1 -5 6161 5905 269 125 21 0 chr11 114178237 114178285 -36605268 + THE1C LTR MaLR 15 63 -312 320 282 67 54 chr11 114178425 114178574 -36604979 + MER5A DNA MER1_type 4 165 -24 548 62 123 12 chr11 114178589 114178670 -36604883 - MER46B DNA MER2_type 0 236 147 270 164 27 14 chr11 114178675 114178748 -36604805 + (TA)n Simple_repeat Simple_repeat 1 74 0 1366 149 13 4 chr11 114178753 114178988 -36604565 - MER46B DNA MER2_type -82 154 43 6166 132 22 28 chr11 114178988 114180284 -36603269 + L1MA4 LINE L1 4999 6289 -11 319 217 0 0 chr11 114180285 114180345 -36603208 - MER46B DNA MER2_type -299 62 3 202 320 39 88 chr11 114180357 114180538 -36603015 - L2 LINE L2 -1283 2031 1860 395 337 65 32 chr11 114180792 114181188 -36602365 - L1MEd LINE L1 -1038 1452 947 788 229 57 65 chr11 114182083 114182345 -36601208 + MLT1H LTR MaLR 41 300 -249 1442 198 88 30 chr11 114182389 114182425 -36601128 - MER7A DNA MER2_type -2692 346 314 1246 106 5 25 chr11 114182425 114182624 -36600929 + L1PA11 LINE L1 5980 6174 0 1442 198 88 30 chr11 114182624 114182915 -36600638 - MER7A DNA MER2_type -2724 314 2 2704 151 12 2 chr11 114183651 114184075 -36599478 - MSTA LTR MaLR 0 428 1 1058 130 121 14 chr11 114184104 114184311 -36599242 - MSTA LTR MaLR 0 428 200 363 183 0 0 chr11 114184311 114184393 -36599160 + GA-rich Low_complexity Low_complexity 2 83 0 798 141 50 7 chr11 114184394 114184589 -36598964 - MSTA LTR MaLR -199 229 1 1170 128 76 0 chr11 114184762 114184973 -36598580 - LTR54 LTR ERV1 0 510 284 617 214 79 0 chr11 114185021 114185161 -36598392 - LTR54B LTR ERV1 -347 151 1 2365 61 0 14 chr11 114185334 114185629 -36597924 + AluY SINE Alu 1 291 -20 2612 173 85 30 chr11 114185688 114186060 -36597493 + L1MB7 LINE L1 5546 5965 -219 1610 195 57 11 chr11 114186060 114186409 -36597144 + MLT1A1 LTR MaLR 1 365 0 2612 173 85 30 chr11 114186409 114186633 -36596920 + L1MB7 LINE L1 5965 6175 -9 572 313 83 32 chr11 114186637 114187142 -36596411 - L1ME4a LINE L1 -253 5868 5338 1276 108 0 6 chr11 114187312 114187488 -36596065 - AluSp SINE Alu -5 308 134 864 206 88 74 chr11 114187587 114187970 -36595583 + MSTC LTR MaLR 1 428 0 864 291 108 6 chr11 114188142 114188485 -36595068 + L2 LINE L2 1547 1924 -1390 1085 196 150 12 chr11 114188512 114188853 -36594700 + MER110A LTR ERV1 1 388 -80 729 153 32 6 chr11 114188882 114189039 -36594514 + Tigger3(Golem) DNA MER2_type 2257 2417 -612 3613 139 90 14 chr11 114189106 114189825 -36593728 + Tigger3(Golem) DNA MER2_type 2256 3029 0 390 202 137 48 chr11 114189827 114189951 -36593602 + L2 LINE L2 3171 3305 -8 1391 216 227 4 chr11 114190489 114190970 -36592583 - L1MD3 LINE L1 -5 7990 7403 383 202 11 43 chr11 114190973 114191067 -36592486 - MLT1F1 LTR MaLR -442 125 35 762 184 55 10 chr11 114191078 114191279 -36592274 - L1MC3 LINE L1 -699 7086 6877 263 315 42 6 chr11 114191422 114191587 -36591966 - HAL1 LINE L1 -978 1529 1359 1486 187 56 8 chr11 114191639 114191794 -36591759 - AluJo SINE Alu -28 284 109 315 0 0 0 chr11 114191794 114191829 -36591724 + (TG)n Simple_repeat Simple_repeat 2 36 0 1486 187 56 8 chr11 114191829 114191941 -36591612 - AluJo SINE Alu -203 109 4 304 313 95 34 chr11 114192015 114192176 -36591377 - L1MEd LINE L1 -5002 1117 967 2670 35 3 0 chr11 114192176 114192486 -36591067 - AluY SINE Alu 0 311 1 304 313 95 34 chr11 114192486 114192618 -36590935 - L1MEd LINE L1 -5152 967 806 389 214 69 41 chr11 114192665 114192685 -36590868 + LTR50 LTR ERVL 12 30 -765 1547 190 18 82 chr11 114192685 114193075 -36590478 - MLT1A1 LTR MaLR 0 365 1 389 214 69 41 chr11 114193075 114193199 -36590354 + LTR50 LTR ERVL 30 160 -635 569 203 170 7 chr11 114193478 114193631 -36589922 - MER45A DNA AcHobo 0 178 1 330 252 31 16 chr11 114193648 114193775 -36589778 + LTR50 LTR ERVL 556 684 -111 315 0 0 0 chr11 114195366 114195401 -36588152 + (TG)n Simple_repeat Simple_repeat 2 36 0 1009 234 23 0 chr11 114196270 114196488 -36587065 + MIR SINE MIR 30 252 -10 266 362 68 5 chr11 114196480 114196667 -36586886 - MIR SINE MIR -58 150 8 * 21 0 0 0 chr11 114197684 114197705 -36585848 + AT_rich Low_complexity Low_complexity 1 21 0 279 293 85 0 chr11 114198034 114198116 -36585437 - MIR SINE MIR -55 207 119 211 255 191 11 chr11 114198628 114198722 -36584831 - L2 LINE L2 -1 3312 3202 189 343 30 20 chr11 114198740 114198839 -36584714 + L2 LINE L2 2538 2637 -677 1827 170 23 0 chr11 114199104 114199404 -36584149 - AluSx SINE Alu -5 307 1 2168 134 50 21 chr11 114199470 114200301 -36583252 + L1MA7 LINE L1 4799 5721 -445 2118 162 31 24 chr11 114200301 114200759 -36582794 + L1MA7 LINE L1 5819 6279 -12 2168 134 50 21 chr11 114200759 114201023 -36582530 + L1MA7 LINE L1 5721 5976 -190 346 246 27 0 chr11 114201056 114201166 -36582387 + L1MA10 LINE L1 6211 6323 -11 675 152 134 6 chr11 114201476 114201640 -36581913 + L1MA7 LINE L1 6107 6291 0 2129 197 34 40 chr11 114201879 114202403 -36581150 + MER73 LTR ERVL 1 521 -123 1140 105 12 0 chr11 114202405 114202567 -36580986 + AluSg/x SINE Alu 137 300 -12 803 103 0 0 chr11 114202577 114202694 -36580859 + MER73 LTR ERVL 528 644 0 2393 154 41 10 chr11 114204381 114204796 -36578757 - MSTA LTR MaLR 0 428 1 812 256 66 61 chr11 114204809 114205372 -36578181 + Tigger8 DNA MER2_type 29 636 -30 2497 27 40 0 chr11 114205780 114206079 -36577474 - AluY SINE Alu 0 311 1 1109 193 41 106 chr11 114206439 114206827 -36576726 + MLT2D LTR ERVL 1 363 -51 2142 142 75 0 chr11 114206835 114207167 -36576386 - LTR18A LTR ERVL 0 357 1 9407 161 5 1 chr11 114207168 114209404 -36574149 - HERVL18 LTR ERVL 0 6047 3772 6665 151 11 3 chr11 114209399 114210484 -36573069 - HERVL18 LTR ERVL -2381 3666 2573 * 2220 181 61 0 chr11 114210474 114210883 -36572670 - HERVL18 LTR ERVL -3886 2161 1728 * 436 118 59 8 chr11 114210920 114211039 -36572514 + CT-rich Low_complexity Low_complexity 2 126 0 455 181 0 12 chr11 114211197 114211280 -36572273 + FLAM_A SINE Alu 18 99 -43 25 0 0 0 chr11 114211283 114211308 -36572245 + AT_rich Low_complexity Low_complexity 1 25 0 380 309 167 29 chr11 114213132 114213342 -36570211 - MIR SINE MIR 0 262 24 235 292 0 31 chr11 114213368 114213464 -36570089 + (TG)n Simple_repeat Simple_repeat 2 94 0 317 123 0 18 chr11 114216401 114216458 -36567095 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 387 127 0 0 chr11 114217271 114217334 -36566219 + (TG)n Simple_repeat Simple_repeat 1 63 0 1572 174 21 0 chr11 114218107 114218395 -36565158 + MER49 LTR ERV1 1 294 -629 1613 215 6 3 chr11 114218440 114218780 -36564773 + MER4D LTR ERV1 563 903 0 1064 247 94 52 chr11 114219292 114219826 -36563727 - LTR38 LTR ERV1 0 556 1 5763 87 53 31 chr11 114220010 114220868 -36562685 - L1PA13 LINE L1 -2 6161 5266 386 121 48 84 chr11 114220868 114220951 -36562602 + MADE1 DNA Mariner 1 80 0 5763 87 53 31 chr11 114220951 114221184 -36562369 - L1PA13 LINE L1 -897 5266 5040 2310 246 67 32 chr11 114221587 114222359 -36561194 + MER21B LTR ERV1 12 810 -53 333 329 51 7 chr11 114222916 114223053 -36560500 - L1MEd LINE L1 -5919 200 58 214 339 178 20 chr11 114223476 114223768 -36559785 - L2 LINE L2 -1185 2129 1792 1164 153 53 5 chr11 114223804 114223994 -36559559 + AluJo SINE Alu 7 205 -107 420 211 11 0 chr11 114225301 114225391 -36558162 - MIR SINE MIR -2 260 170 377 235 42 111 chr11 114225530 114225747 -36557806 - LTR67 LTR ERVL 0 557 356 451 311 91 9 chr11 114226118 114226397 -36557156 - LTR16A LTR ERVL -5 452 140 569 220 0 0 chr11 114226580 114226698 -36556855 + L1M4 LINE L1 5478 5595 -583 363 203 0 0 chr11 114226917 114226991 -36556562 - L1M4 LINE L1 -627 5551 5478 23 0 0 0 chr11 114227003 114227026 -36556527 + AT_rich Low_complexity Low_complexity 1 23 0 229 278 167 21 chr11 114227176 114227320 -36556233 + L3 LINE CR1 1118 1282 -295 259 360 0 0 chr11 114227392 114227481 -36556072 + L3 LINE CR1 1417 1505 -72 487 271 50 23 chr11 114227594 114227815 -36555738 + Charlie8 DNA MER1_type 76 302 -2115 193 387 13 0 chr11 114227898 114227973 -36555580 + L2 LINE L2 3011 3086 -227 1836 143 43 0 chr11 114228517 114228797 -36554756 - AluSx SINE Alu -20 292 1 23 0 0 0 chr11 114228903 114228926 -36554627 + AT_rich Low_complexity Low_complexity 1 23 0 705 200 82 85 chr11 114229145 114229353 -36554200 + L1 LINE L1 3562 3770 -2376 1913 179 0 0 chr11 114229353 114229654 -36553899 + AluJb SINE Alu 1 301 -11 705 200 82 85 chr11 114229654 114229715 -36553838 + L1 LINE L1 3770 3830 -2316 1399 269 41 60 chr11 114229718 114230119 -36553434 - MLT1E LTR MaLR -6 587 197 1969 120 41 24 chr11 114230119 114230410 -36553143 - AluSq SINE Alu -17 296 1 1399 269 41 60 chr11 114230410 114230546 -36553007 - MLT1E LTR MaLR -396 197 60 419 265 82 36 chr11 114230565 114230761 -36552792 - MLT1J LTR MaLR -296 215 11 415 251 101 56 chr11 114231943 114232210 -36551343 + MLT1I LTR MaLR 123 401 -8 471 268 63 21 chr11 114232228 114232418 -36551135 + L2 LINE L2 3112 3309 -4 476 200 96 59 chr11 114232523 114232658 -36550895 + MIR SINE MIR 66 205 -57 740 293 75 34 chr11 114232782 114233076 -36550477 + MLT1J LTR MaLR 153 458 -53 211 321 0 0 chr11 114233182 114233238 -36550315 + (TG)n Simple_repeat Simple_repeat 2 57 0 5772 110 24 15 chr11 114233374 114233731 -36549822 - L1PB1 LINE L1 0 6151 5799 195 42 0 0 chr11 114233731 114233755 -36549798 + (TG)n Simple_repeat Simple_repeat 2 25 0 * 401 36 0 18 chr11 114233754 114233810 -36549743 + (TA)n Simple_repeat Simple_repeat 1 55 0 5772 110 24 15 chr11 114233755 114234585 -36548968 - L1PB1 LINE L1 -352 5799 5019 825 231 58 0 chr11 114234584 114234827 -36548726 + L1PB1 LINE L1 4771 5027 -1119 * 241 133 89 0 chr11 114235966 114236011 -36547542 - MLT2C2 LTR ERVL 0 464 416 2111 205 65 13 chr11 114236012 114236460 -36547093 - MLT2B3 LTR ERVL -83 471 1 331 271 9 28 chr11 114236613 114236720 -36546833 - LTR16A LTR ERVL -7 443 346 1779 181 75 36 chr11 114237732 114238174 -36545379 + LTR2B LTR ERV1 32 490 0 35203 67 33 23 chr11 114238182 114243253 -36540300 + Harlequin LTR ERV1 1 5123 -1773 6963 121 8 1 chr11 114243240 114244311 -36539242 + Harlequin LTR ERV1 5810 6888 -8 * 1598 195 88 63 chr11 114244312 114244789 -36538764 + LTR2B LTR ERV1 2 490 0 29 28 0 0 chr11 114244969 114245005 -36538548 + AT_rich Low_complexity Low_complexity 1 36 0 1616 261 106 22 chr11 114245020 114245401 -36538152 + L2 LINE L2 2130 2578 -736 2064 141 39 36 chr11 114245401 114245764 -36537789 + THE1B LTR MaLR 1 364 0 1616 261 106 22 chr11 114245764 114245965 -36537588 + L2 LINE L2 2578 2761 -553 743 269 47 71 chr11 114245951 114246097 -36537456 + L2 LINE L2 2939 3087 -226 * 2163 117 0 3 chr11 114246097 114246396 -36537157 + AluY SINE Alu 1 298 -13 743 269 47 71 chr11 114246396 114246614 -36536939 + L2 LINE L2 3087 3294 -19 347 325 178 6 chr11 114247096 114247253 -36536300 - MIR SINE MIR -78 184 1 251 333 63 32 chr11 114248614 114248740 -36534813 - L2 LINE L2 -187 3085 2956 203 261 0 14 chr11 114248965 114249033 -36534520 + MIR SINE MIR 84 148 -62 28 29 0 0 chr11 114250684 114250719 -36532834 + AT_rich Low_complexity Low_complexity 1 35 0 307 320 23 55 chr11 114250893 114251021 -36532532 - MIR3 SINE MIR -71 137 14 1930 141 136 18 chr11 114251442 114251824 -36531729 - MSTA LTR MaLR -1 427 1 786 245 107 0 chr11 114251839 114252055 -36531498 - MIR SINE MIR 0 262 24 522 297 78 17 chr11 114252431 114252650 -36530903 - MIR SINE MIR -18 244 7 355 291 51 25 chr11 114252997 114253155 -36530398 + MARNA DNA Mariner 356 517 -69 375 23 0 0 chr11 114253203 114253247 -36530306 + (CA)n Simple_repeat Simple_repeat 1 44 0 519 278 34 48 chr11 114253281 114253490 -36530063 - L3 LINE CR1 -193 1384 1179 302 344 76 13 chr11 114254495 114254652 -36528901 + MIR SINE MIR 94 260 -2 236 336 58 67 chr11 114254866 114255089 -36528464 - L2 LINE L2 -86 3186 2966 2319 158 134 35 chr11 114255329 114256043 -36527510 + LTR1B LTR ERV1 1 826 0 317 244 61 30 chr11 114256384 114256515 -36527038 + MIR SINE MIR 32 166 -96 281 233 56 44 chr11 114256653 114256743 -36526810 - Charlie8 DNA MER1_type -1946 471 381 719 289 12 45 chr11 114256755 114256819 -36526734 - MIR SINE MIR -27 235 170 2310 88 3 3 chr11 114256819 114257115 -36526438 - AluSg SINE Alu -14 296 1 719 289 12 45 chr11 114257115 114257292 -36526261 - MIR SINE MIR -92 170 2 400 291 80 38 chr11 114257394 114257631 -36525922 - Charlie8 DNA MER1_type -2163 254 8 467 268 126 50 chr11 114257650 114257889 -36525664 + MIR SINE MIR 6 262 0 343 304 112 25 chr11 114258500 114258661 -36524892 - MER5A DNA MER1_type -14 175 1 358 342 65 0 chr11 114259027 114259211 -36524342 + MLT1L LTR MaLR 411 606 -9 431 255 91 19 chr11 114261146 114261354 -36522199 + MLT1L LTR MaLR 68 290 -325 421 257 82 0 chr11 114261454 114261625 -36521928 + MLT1L LTR MaLR 427 611 -4 464 286 96 40 chr11 114261667 114261866 -36521687 + MIR SINE MIR 4 213 -49 339 286 31 0 chr11 114262842 114262940 -36520613 + MIR SINE MIR 88 188 -74 636 271 111 29 chr11 114263366 114264008 -36519545 - L1MC5 LINE L1 -50 7911 7261 429 195 41 41 chr11 114264013 114264136 -36519417 - L1MC5 LINE L1 -2014 5794 5672 373 302 68 18 chr11 114264198 114264827 -36518726 - L1MEd LINE L1 -4883 1236 701 1574 135 31 130 chr11 114264892 114265308 -36518245 - THE1C LTR MaLR 0 375 1 891 228 99 36 chr11 114267193 114267556 -36515997 - MER39 LTR ERV1 -79 628 119 181 191 64 21 chr11 114267733 114267780 -36515773 - MER5B DNA MER1_type -124 54 6 262 287 25 33 chr11 114270493 114270615 -36512938 + MER117 DNA MER1_type 46 166 -31 2328 80 0 17 chr11 114271084 114271383 -36512170 + AluY SINE Alu 3 296 -15 537 267 60 0 chr11 114271890 114272040 -36511513 - MLT1G1 LTR MaLR -8 587 429 831 238 84 48 chr11 114272069 114272379 -36511174 - MLT1G1 LTR MaLR -277 279 1 317 216 182 0 chr11 114272379 114272430 -36511123 + MER105 DNA DNA 102 142 -62 189 0 0 0 chr11 114272430 114272451 -36511102 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 317 216 182 0 chr11 114272451 114272484 -36511069 + MER105 DNA DNA 142 202 -2 211 211 0 0 chr11 114272517 114272555 -36510998 + L2 LINE L2 3216 3253 -19 345 331 23 0 chr11 114273015 114273145 -36510408 - MIR SINE MIR 0 262 130 386 300 50 7 chr11 114273414 114273554 -36509999 - MIR3 SINE MIR -3 205 60 245 117 8 18 chr11 114274572 114274626 -36508927 - LTR41 LTR ERVL -3 792 723 1123 180 31 27 chr11 114274632 114274814 -36508739 + AluJo SINE Alu 90 275 -37 207 0 0 0 chr11 114274814 114274837 -36508716 + (GA)n Simple_repeat Simple_repeat 2 24 0 1123 180 31 27 chr11 114274837 114274876 -36508677 + AluJo SINE Alu 275 312 0 1091 255 148 17 chr11 114274924 114275452 -36508101 - LTR50 LTR ERVL -119 676 3 2609 130 39 5 chr11 114275822 114276236 -36507317 + MSTA LTR MaLR 1 428 0 34749 89 12 25 chr11 114276904 114283123 -36500430 + L1PA6 LINE L1 11 6136 -18 267 54 0 0 chr11 114283134 114283171 -36500382 + (TA)n Simple_repeat Simple_repeat 1 37 0 713 168 168 6 chr11 114283785 114283958 -36499595 - MER3 DNA MER1_type -5 204 4 319 250 39 7 chr11 114284610 114284716 -36498837 - MIR SINE MIR -63 145 60 1638 185 24 3 chr11 114284743 114285009 -36498544 + AluJo SINE Alu 9 283 -29 522 0 0 0 chr11 114285009 114285067 -36498486 + (CA)n Simple_repeat Simple_repeat 2 59 0 1638 185 24 3 chr11 114285067 114285087 -36498466 + AluJo SINE Alu 283 301 -11 511 131 111 0 chr11 114285500 114285599 -36497954 - L1MA7 LINE L1 -7 6284 6175 2874 83 38 7 chr11 114286926 114287349 -36496204 + MLT2A1 LTR ERVL 1 436 -8 227 270 180 9 chr11 114287428 114287539 -36496014 - L2 LINE L2 -5 3267 3138 24 0 0 0 chr11 114287821 114287845 -36495708 + AT_rich Low_complexity Low_complexity 1 24 0 3346 158 52 53 chr11 114288915 114289689 -36493864 + L1MA7 LINE L1 5509 6281 -10 23 0 0 0 chr11 114289703 114289726 -36493827 + AT_rich Low_complexity Low_complexity 1 23 0 1454 117 27 63 chr11 114289740 114290039 -36493514 + L1MA9 LINE L1 6025 6312 0 1894 146 30 7 chr11 114290154 114290449 -36493104 + AluSx SINE Alu 1 302 -10 1328 165 15 8 chr11 114290714 114290959 -36492594 - MER31A LTR ERV1 0 485 239 2512 149 38 53 chr11 114290959 114291490 -36492063 + LTR26B LTR ERV1 1 523 -8 603 176 86 0 chr11 114291493 114291648 -36491905 - MER31A LTR ERV1 -243 242 19 1462 254 39 17 chr11 114291656 114292121 -36491432 + L1MCb LINE L1 8 482 -5563 287 274 42 32 chr11 114292140 114292235 -36491318 - MLT1K LTR MaLR -172 416 321 2126 122 0 3 chr11 114292543 114292846 -36490707 + AluSx SINE Alu 5 306 -6 250 268 0 0 chr11 114293831 114293887 -36489666 + GA-rich Low_complexity Low_complexity 1 56 0 540 293 182 6 chr11 114295528 114295709 -36487844 + MIR SINE MIR 36 248 -14 22 0 0 0 chr11 114295902 114295924 -36487629 + AT_rich Low_complexity Low_complexity 1 22 0 680 250 37 0 chr11 114296147 114296311 -36487242 - MIR SINE MIR -58 204 35 245 321 52 15 chr11 114296484 114296618 -36486935 - L2 LINE L2 -260 3012 2874 229 266 68 45 chr11 114296680 114296857 -36486696 + MER34 LTR ERV1 67 247 -295 362 136 0 17 chr11 114296857 114296916 -36486637 + MER39 LTR ERV1 1 58 -649 1341 133 0 5 chr11 114296929 114297117 -36486436 - AluSg/x SINE Alu -21 289 103 743 113 9 0 chr11 114297128 114297243 -36486310 - MER4D LTR ERV1 -587 285 170 2781 125 5 5 chr11 114297258 114297698 -36485855 + MER4D LTR ERV1 464 903 0 310 276 10 0 chr11 114297812 114297910 -36485643 - MER110A LTR ERV1 -298 170 72 339 65 0 0 chr11 114298387 114298433 -36485120 + (TC)n Simple_repeat Simple_repeat 2 47 0 25 21 0 43 chr11 114298435 114298453 -36485100 + AT_rich Low_complexity Low_complexity 1 18 -27 2167 101 13 7 chr11 114298453 114298751 -36484802 - AluSp SINE Alu -13 300 1 25 21 0 43 chr11 114298751 114298779 -36484774 + AT_rich Low_complexity Low_complexity 18 45 0 185 291 0 0 chr11 114298806 114298861 -36484692 - L2 LINE L2 -1012 2302 2248 1295 209 125 86 chr11 114299453 114300071 -36483482 + LTR48B LTR ERV1 1 642 -2 334 324 18 9 chr11 114300586 114300697 -36482856 + MIR3 SINE MIR 82 193 -15 2029 146 0 3 chr11 114300878 114301172 -36482381 + AluSx SINE Alu 18 310 -2 433 290 27 92 chr11 114301470 114301617 -36481936 - MIR SINE MIR -7 255 135 2375 65 0 16 chr11 114301617 114301924 -36481629 - AluY SINE Alu -9 302 1 433 290 27 92 chr11 114301924 114302039 -36481514 - MIR SINE MIR -127 135 14 2146 115 0 3 chr11 114302169 114302473 -36481080 + AluY SINE Alu 1 303 -8 1061 227 132 40 chr11 114302617 114303128 -36480425 + MER34C LTR ERV1 1 511 -31 879 298 86 26 chr11 114303914 114304296 -36479257 + LTR16C LTR ERVL 85 489 -2 288 380 44 6 chr11 114304705 114304863 -36478690 - L2 LINE L2 -8 3264 3101 213 233 23 0 chr11 114305099 114305142 -36478411 - MIR3 SINE MIR -14 194 151 387 83 0 0 chr11 114305243 114305303 -36478250 + (CA)n Simple_repeat Simple_repeat 1 60 0 314 329 40 50 chr11 114306737 114307006 -36476547 - L2 LINE L2 -219 3053 2788 893 228 80 92 chr11 114307399 114307864 -36475689 + MLT1C LTR MaLR 7 465 -2 339 337 128 33 chr11 114308313 114308681 -36474872 + L1MEd LINE L1 274 676 -5443 520 274 53 48 chr11 114308717 114309093 -36474460 + L1MEd LINE L1 757 1134 -4985 33 43 0 0 chr11 114309171 114309218 -36474335 + AT_rich Low_complexity Low_complexity 1 47 0 544 282 71 14 chr11 114309264 114309629 -36473924 + L1MEd LINE L1 1284 1669 -4641 1174 168 47 19 chr11 114310065 114310201 -36473352 + L1MD3 LINE L1 7733 7864 -131 4995 117 33 9 chr11 114310201 114310963 -36472590 - LTR17 LTR ERV1 0 780 1 1174 168 47 19 chr11 114310963 114311082 -36472471 + L1MD3 LINE L1 7864 7995 0 1861 153 0 24 chr11 114311221 114311516 -36472037 + AluJo SINE Alu 2 289 -23 774 243 22 36 chr11 114311584 114311617 -36471936 + L1PA16 LINE L1 5942 5974 -192 2100 155 3 0 chr11 114311617 114311926 -36471627 + AluSx SINE Alu 3 312 0 774 243 22 36 chr11 114311926 114312114 -36471439 + L1PA16 LINE L1 5974 6160 -6 495 279 38 47 chr11 114312551 114312655 -36470898 + L1MEd LINE L1 2333 2436 -3693 2180 128 128 11 chr11 114312655 114313037 -36470516 - MSTA LTR MaLR -1 427 1 495 279 38 47 chr11 114313037 114313272 -36470281 + L1MEd LINE L1 2436 2669 -3460 184 368 26 51 chr11 114313745 114313862 -36469691 - L2 LINE L2 -173 3099 2986 392 286 31 57 chr11 114314244 114314436 -36469117 + MIR3 SINE MIR 8 194 -14 607 287 17 17 chr11 114314555 114314736 -36468817 - MIR SINE MIR -48 214 34 2400 138 75 21 chr11 114314961 114315388 -36468165 - LTR47A LTR ERVL 0 452 3 4777 148 46 15 chr11 114316330 114317241 -36466312 + L1PBa LINE L1 3 941 -5922 543 279 32 6 chr11 114317274 114317432 -36466121 + MIR SINE MIR 2 163 -99 2176 200 40 100 chr11 114317453 114318184 -36465369 + LTR8A LTR ERV1 40 726 -1 21 71 0 0 chr11 114318306 114318348 -36465205 + AT_rich Low_complexity Low_complexity 1 42 0 342 67 0 0 chr11 114318421 114318466 -36465087 + (CA)n Simple_repeat Simple_repeat 2 46 0 478 279 43 6 chr11 114318919 114319080 -36464473 - MIR SINE MIR -17 245 79 192 206 289 21 chr11 114319089 114319186 -36464367 - L2 LINE L2 -8 3305 3183 240 325 35 113 chr11 114319323 114319526 -36464027 + L2 LINE L2 2898 3084 -188 225 263 56 101 chr11 114319637 114319789 -36463764 + MIR3 SINE MIR 7 160 -85 290 323 102 24 chr11 114321693 114321820 -36461733 + MIR SINE MIR 17 153 -109 322 282 0 39 chr11 114321931 114322034 -36461519 - L2 LINE L2 -5 3308 3210 1759 166 75 3 chr11 114322088 114322437 -36461116 + MLT2D LTR ERVL 3 474 -46 402 181 0 90 chr11 114322492 114322625 -36460928 + MER112 DNA MER1_type 133 253 -7 1852 174 12 12 chr11 114323057 114323397 -36460156 - MER2 DNA MER2_type 0 344 5 1866 219 67 103 chr11 114323403 114323641 -36459912 + L1MC3 LINE L1 6913 7158 -627 283 186 34 0 chr11 114323641 114323700 -36459853 + MLT1F1 LTR MaLR 71 131 -436 1866 219 67 103 chr11 114323700 114324293 -36459260 + L1MC3 LINE L1 7158 7770 -15 405 292 70 6 chr11 114325054 114325225 -36458328 - MLT1J2 LTR MaLR 0 450 269 578 279 29 29 chr11 114325297 114325505 -36458048 + MER63A DNA MER1_type 1 208 -2 221 313 209 26 chr11 114325595 114325710 -36457843 + MER91C DNA MER1_type 4 139 -1 1440 210 97 28 chr11 114326728 114327162 -36456391 + MLT2B1 LTR ERVL 1 464 -56 2058 141 0 3 chr11 114327255 114327545 -36456008 - AluSx SINE Alu -23 289 1 306 294 100 31 chr11 114328461 114328621 -36454932 + MIR3 SINE MIR 6 176 -32 3599 136 117 5 chr11 114329242 114329875 -36453678 + MER39 LTR ERV1 4 707 0 31 44 0 0 chr11 114329884 114329929 -36453624 + AT_rich Low_complexity Low_complexity 1 45 0 1171 128 5 0 chr11 114330486 114330674 -36452879 + MSTA LTR MaLR 1 189 -239 1989 233 16 67 chr11 114330681 114330942 -36452611 - L1P LINE L1 -3027 3119 2846 2359 91 13 0 chr11 114330942 114331240 -36452313 - AluSx SINE Alu -10 302 1 1989 233 16 67 chr11 114331240 114331765 -36451788 - L1P LINE L1 -3300 2846 2373 273 324 108 0 chr11 114331833 114331935 -36451618 - MIR3 SINE MIR -7 201 89 198 0 0 0 chr11 114332585 114332607 -36450946 + (CAG)n Simple_repeat Simple_repeat 2 23 0 444 261 146 55 chr11 114332879 114333078 -36450475 - MIR SINE MIR 0 262 46 1245 183 42 17 chr11 114333093 114333233 -36450320 - Charlie5 DNA MER1_type -36 2588 2453 2359 115 0 0 chr11 114333233 114333538 -36450015 - AluSx SINE Alu -7 305 1 1245 183 42 17 chr11 114333538 114333752 -36449801 - Charlie5 DNA MER1_type -171 2453 2225 559 172 16 8 chr11 114333739 114333861 -36449692 - Charlie5 DNA MER1_type -2489 123 1 * 1063 209 5 9 chr11 114333895 114334105 -36449448 + AluJo SINE Alu 85 293 -19 372 315 0 11 chr11 114334266 114334358 -36449195 + MIR SINE MIR 12 102 -160 380 71 18 0 chr11 114335202 114335258 -36448295 + (GA)n Simple_repeat Simple_repeat 2 58 0 595 318 5 23 chr11 114336595 114336812 -36446741 - MIR SINE MIR -44 218 6 218 273 216 0 chr11 114338087 114338175 -36445378 + MIR SINE MIR 84 190 -72 220 178 59 10 chr11 114338273 114338374 -36445179 + (TATG)n Simple_repeat Simple_repeat 3 108 0 * 302 171 14 0 chr11 114338373 114338443 -36445110 + (CA)n Simple_repeat Simple_repeat 2 72 0 425 275 62 26 chr11 114338605 114338798 -36444755 + LTR7 LTR ERV1 238 437 -13 418 173 16 31 chr11 114338807 114338934 -36444619 + (CATA)n Simple_repeat Simple_repeat 2 126 0 1599 235 44 5 chr11 114339433 114339816 -36443737 - MER119 DNA MER1_type -182 401 4 2788 167 64 25 chr11 114340457 114341021 -36442532 - MER6A DNA MER2_type -5 600 15 302 208 148 20 chr11 114341062 114341163 -36442390 + L2 LINE L2 1628 1741 -1573 3399 56 5 0 chr11 114341163 114341594 -36441959 + L1PA8 LINE L1 5731 6163 -9 308 260 143 26 chr11 114341634 114341788 -36441765 + L2 LINE L2 1899 2070 -1244 315 276 41 28 chr11 114341894 114342039 -36441514 + L2 LINE L2 3167 3313 0 399 229 59 59 chr11 114344133 114344149 -36439404 - L1MA10 LINE L1 -1 6333 6318 325 254 68 57 chr11 114344149 114344326 -36439227 - L1ME1 LINE L1 -4 6162 5984 2315 76 0 45 chr11 114344766 114345080 -36438473 - AluSg SINE Alu -10 300 1 565 318 120 14 chr11 114345211 114345428 -36438125 + MIR SINE MIR 13 252 -10 226 182 36 0 chr11 114345509 114345564 -36437989 - L2 LINE L2 -1 3312 3256 889 187 27 0 chr11 114346262 114346412 -36437141 - FRAM SINE Alu -24 152 1 273 296 62 0 chr11 114346788 114346869 -36436684 - L2 LINE L2 -189 3083 2998 * 392 252 48 0 chr11 114346868 114346971 -36436582 - MIR SINE MIR 0 262 155 257 286 0 13 chr11 114346974 114347051 -36436502 + (TATG)n Simple_repeat Simple_repeat 1 76 0 623 168 76 0 chr11 114349095 114349226 -36434327 - L1ME3A LINE L1 -1 6169 6029 723 283 6 6 chr11 114349345 114349522 -36434031 + MER5A DNA MER1_type 7 183 -6 311 203 40 0 chr11 114349671 114349745 -36433808 - L1ME1 LINE L1 -7 6159 6083 209 333 116 29 chr11 114349801 114349939 -36433614 + L2 LINE L2 3164 3313 0 793 307 84 36 chr11 114350116 114350582 -36432971 + LTR16C LTR ERVL 1 488 -3 304 235 81 52 chr11 114350620 114350756 -36432797 + MIR SINE MIR 66 205 -57 451 270 50 38 chr11 114351048 114351207 -36432346 - L2 LINE L2 -4 3309 3149 7484 164 37 11 chr11 114351246 114353692 -36429861 + L1PB1 LINE L1 3636 6148 -3 1519 285 117 19 chr11 114353720 114354437 -36429116 - L2 LINE L2 -208 3105 2308 729 231 80 53 chr11 114354461 114354686 -36428867 + MIR SINE MIR 18 248 -14 784 265 32 5 chr11 114354687 114354906 -36428647 - L2 LINE L2 -1000 2314 2090 2009 165 9 41 chr11 114355356 114355798 -36427755 - L1MB4 LINE L1 0 6180 5753 312 336 42 7 chr11 114356238 114356381 -36427172 - L3b LINE CR1 -132 1451 1304 387 0 0 0 chr11 114357096 114357139 -36426414 + (TG)n Simple_repeat Simple_repeat 2 44 0 280 280 89 70 chr11 114357844 114358001 -36425552 - MLT1I LTR MaLR -148 261 102 18239 36 1 2 chr11 114358384 114360942 -36422611 + L1P1 LINE L1 3172 5724 -431 247 278 9 23 chr11 114360997 114361141 -36422412 + T-rich Low_complexity Low_complexity 1 142 0 349 172 0 0 chr11 114361339 114361403 -36422150 - L1 LINE L1 -2597 3785 3722 * 3596 204 21 24 chr11 114361394 114361798 -36421755 - L1 LINE L1 -3089 3293 2889 2496 245 53 6 chr11 114361798 114362422 -36421131 - MER82 DNA MER2_type 0 653 1 3596 204 21 24 chr11 114362422 114362995 -36420558 - L1 LINE L1 -3493 2889 2308 204 158 0 0 chr11 114363021 114363059 -36420494 + A-rich Low_complexity Low_complexity 2 39 0 1390 154 0 0 chr11 114363315 114363523 -36420030 - AluSg/x SINE Alu -12 298 91 696 249 28 23 chr11 114364243 114364420 -36419133 + MER5B DNA MER1_type 1 178 0 220 356 19 19 chr11 114365941 114366061 -36417492 - MIR SINE MIR -72 136 17 495 294 71 16 chr11 114366672 114366856 -36416697 - MIR SINE MIR -46 216 23 2509 125 24 5 chr11 114367074 114367491 -36416062 - L1MA6 LINE L1 0 6300 5876 652 303 88 33 chr11 114367497 114367919 -36415634 - L1MC4a LINE L1 -1915 5893 5449 3723 158 24 14 chr11 114367929 114368639 -36414914 - L1MB7 LINE L1 -15 6667 5951 2307 131 34 6 chr11 114368639 114368997 -36414556 + THE1C LTR MaLR 3 370 -5 243 304 101 20 chr11 114368998 114369146 -36414407 - L1MC/D LINE L1 -1943 5865 5706 * 4289 206 67 13 chr11 114369121 114370360 -36413193 - L1MB7 LINE L1 -697 5981 4667 710 92 9 9 chr11 114370361 114370470 -36413083 - L1MB1 LINE L1 0 6168 6060 1178 242 47 28 chr11 114370489 114370852 -36412701 - L1MB7 LINE L1 -6163 379 10 874 88 0 15 chr11 114370852 114370988 -36412565 + (TTCC)n Simple_repeat Simple_repeat 1 134 0 380 226 226 0 chr11 114370988 114371090 -36412463 - FLAM_A SINE Alu -7 126 2 335 329 92 17 chr11 114371573 114371788 -36411765 + MIR SINE MIR 2 233 -29 294 294 28 28 chr11 114371885 114371994 -36411559 + L2 LINE L2 3191 3299 -14 379 313 55 12 chr11 114371997 114372160 -36411393 - L3b LINE CR1 -110 1473 1304 387 0 0 0 chr11 114372876 114372919 -36410634 + (TG)n Simple_repeat Simple_repeat 2 44 0 312 310 69 54 chr11 114373624 114373827 -36409726 - MLT1I LTR MaLR -148 261 56 631 179 143 18 chr11 114373864 114374032 -36409521 - MER53 DNA DNA 0 189 1 391 351 96 21 chr11 114375055 114375388 -36408165 + MLT1L LTR MaLR 163 520 -95 302 290 93 9 chr11 114375628 114375735 -36407818 + L2 LINE L2 3188 3303 -10 449 207 41 28 chr11 114376738 114376883 -36406670 - L1MC5 LINE L1 -32 7929 7783 260 289 176 13 chr11 114376890 114377049 -36406504 - MIR SINE MIR -70 192 8 191 274 20 0 chr11 114377123 114377174 -36406379 - L2 LINE L2 -6 3307 3256 358 283 9 0 chr11 114377233 114377339 -36406214 - L1MB8 LINE L1 0 6178 6072 354 226 49 29 chr11 114377339 114377441 -36406112 + L2 LINE L2 3210 3313 0 417 292 115 41 chr11 114379093 114379336 -36404217 + MIR SINE MIR 1 261 -1 482 232 194 13 chr11 114379592 114379747 -36403806 + MER5A DNA MER1_type 4 186 -3 1805 164 121 21 chr11 114380542 114380931 -36402622 - MSTA LTR MaLR 0 428 1 318 261 60 80 chr11 114381541 114381725 -36401828 - MIR SINE MIR -61 147 21 1822 138 25 68 chr11 114381798 114382074 -36401479 + L1MA7 LINE L1 5907 6162 -129 2069 134 70 17 chr11 114382074 114382418 -36401135 - THE1B LTR MaLR -2 362 1 1822 138 25 68 chr11 114382418 114382538 -36401015 + L1MA7 LINE L1 6162 6286 -5 26 0 0 0 chr11 114383346 114383372 -36400181 + AT_rich Low_complexity Low_complexity 1 26 0 486 313 80 6 chr11 114383422 114383585 -36399968 - MIR SINE MIR -77 185 11 2542 44 0 0 chr11 114384367 114384663 -36398890 - AluY SINE Alu -15 296 1 248 271 0 0 chr11 114384724 114384783 -36398770 + (CA)n Simple_repeat Simple_repeat 1 59 0 224 366 80 0 chr11 114384785 114384897 -36398656 - MIR3 SINE MIR -10 198 78 217 355 41 16 chr11 114385038 114385159 -36398394 + MIR SINE MIR 125 248 -14 1518 220 49 6 chr11 114386050 114386400 -36397153 + MLT1A1 LTR MaLR 1 365 0 252 319 164 9 chr11 114386434 114386550 -36397003 - L2 LINE L2 -35 3237 3104 273 315 96 20 chr11 114387160 114387452 -36396101 + L1ME4a LINE L1 5586 5899 -222 4685 212 50 11 chr11 114387701 114389382 -36394171 + L1PA13 LINE L1 1213 2966 -3831 3944 263 7 4 chr11 114389406 114389850 -36393703 - L1P LINE L1 -2614 3532 3091 180 0 0 0 chr11 114389850 114389870 -36393683 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3944 263 7 4 chr11 114389870 114390560 -36392993 - L1P LINE L1 -3055 3091 2395 7259 106 68 7 chr11 114390560 114391907 -36391646 + L1PBa LINE L1 1573 2995 -3867 180 111 0 0 chr11 114391947 114391974 -36391579 + (CTG)n Simple_repeat Simple_repeat 3 29 0 442 324 12 2 chr11 114392272 114392437 -36391116 + MIR SINE MIR 18 180 -68 2903 214 1 0 chr11 114392438 114393086 -36390467 + L1 LINE L1 2285 2933 -3213 2120 155 0 0 chr11 114393086 114393396 -36390157 + AluSx SINE Alu 1 310 -2 1560 180 31 25 chr11 114393416 114393771 -36389782 + LTR15 LTR ERV1 136 492 -1 3139 229 7 26 chr11 114393772 114394672 -36388881 + L1 LINE L1 2959 3841 -2305 1852 144 82 20 chr11 114394675 114395028 -36388525 - THE1C LTR MaLR 0 375 1 10266 123 31 7 chr11 114395028 114396571 -36386982 - THE1C-int LTR MaLR 0 1580 1 1384 174 54 41 chr11 114396582 114396899 -36386654 - THE1C LTR MaLR -1 374 54 1142 133 6 0 chr11 114396900 114397081 -36386472 + L1PA15 LINE L1 5598 5779 -386 1530 141 0 0 chr11 114397086 114397320 -36386233 + L1PA15 LINE L1 5926 6159 -6 2423 116 14 11 chr11 114397376 114397739 -36385814 - THE1B LTR MaLR 0 364 1 9648 110 32 39 chr11 114397749 114399330 -36384223 - THE1B-int LTR MaLR -11 1569 1 2434 121 20 3 chr11 114399330 114399686 -36383867 - THE1B LTR MaLR 0 364 3 246 266 43 77 chr11 114399719 114399867 -36383686 - MIR3 SINE MIR -68 140 5 738 216 68 11 chr11 114400864 114401040 -36382513 - MLT1A2 LTR MaLR 0 374 189 257 228 13 0 chr11 114401064 114401143 -36382410 + GA-rich Low_complexity Low_complexity 2 81 0 864 171 33 11 chr11 114401143 114401324 -36382229 - MLT1A2 LTR MaLR -189 185 1 28 48 0 0 chr11 114401765 114401807 -36381746 + AT_rich Low_complexity Low_complexity 1 42 0 592 209 170 13 chr11 114402374 114402527 -36381026 + MER5B DNA MER1_type 1 177 -1 326 289 52 30 chr11 114402923 114403058 -36380495 - L2 LINE L2 0 3313 3176 417 322 105 6 chr11 114403108 114403279 -36380274 - MER5A DNA MER1_type 0 189 2 27 29 0 0 chr11 114403801 114403835 -36379718 + AT_rich Low_complexity Low_complexity 1 34 0 245 242 182 0 chr11 114404304 114404370 -36379183 + MER81 DNA DNA 2 79 -35 21 36 0 0 chr11 114404759 114404787 -36378766 + AT_rich Low_complexity Low_complexity 1 28 0 191 405 34 11 chr11 114404790 114404879 -36378674 - L2 LINE L2 -48 3224 3134 579 278 94 16 chr11 114406721 114406912 -36376641 + MIR SINE MIR 51 256 -6 230 205 189 0 chr11 114408584 114408665 -36374888 + MIR SINE MIR 35 131 -77 187 237 11 97 chr11 114409004 114409097 -36374456 + MIR SINE MIR 128 212 -50 188 365 0 0 chr11 114409256 114409319 -36374234 + L2 LINE L2 3210 3272 0 472 251 61 84 chr11 114409507 114409770 -36373783 + MIR SINE MIR 3 259 -3 362 350 36 25 chr11 114409885 114410076 -36373477 + MIR SINE MIR 15 206 -56 5758 68 1 20 chr11 114410116 114410930 -36372623 + L1PA3 LINE L1 2 800 -5346 * 25378 32 0 2 chr11 114410928 114414940 -36368613 + L1PA3 LINE L1 2164 6167 0 8068 204 39 12 chr11 114415251 114418279 -36365274 - L1PA16 LINE L1 -2 6164 3072 1176 275 21 0 chr11 114418302 114418720 -36364833 + L1 LINE L1 2626 3052 -3094 381 294 104 48 chr11 114418740 114419078 -36364475 - MLT1H1 LTR MaLR -227 363 6 629 171 122 0 chr11 114419608 114419772 -36363781 - L1MA7 LINE L1 0 6291 6108 590 320 26 26 chr11 114420260 114420491 -36363062 + L2 LINE L2 3081 3311 -2 264 100 0 0 chr11 114421479 114421519 -36362034 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 216 336 62 26 chr11 114421520 114421633 -36361920 - L2 LINE L2 -14 3258 3142 194 347 65 8 chr11 114421967 114422091 -36361462 - L2 LINE L2 -214 3058 2928 204 135 0 0 chr11 114423083 114423120 -36360433 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 684 196 9 0 chr11 114423367 114423479 -36360074 + FRAM SINE Alu 34 146 -30 234 0 0 0 chr11 114423494 114423520 -36360033 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 1347 221 137 22 chr11 114423774 114424227 -36359326 + MLT1D LTR MaLR 1 505 0 466 307 54 18 chr11 114425967 114426133 -36357420 + L2 LINE L2 2892 3063 -250 1268 291 62 56 chr11 114426322 114427302 -36356251 - L2 LINE L2 -1 3312 2279 204 306 115 19 chr11 114428651 114428793 -36354760 - MIR3 SINE MIR -67 141 2 28715 41 1 5 chr11 114428969 114430959 -36352594 + L1PA5 LINE L1 1632 3628 -2526 2561 61 0 3 chr11 114430959 114431269 -36352284 + AluY SINE Alu 1 309 -2 28715 41 1 5 chr11 114431269 114433810 -36349743 + L1PA5 LINE L1 3628 6147 -7 200 189 0 0 chr11 114433821 114433858 -36349695 + A-rich Low_complexity Low_complexity 3 39 0 37 81 0 0 chr11 114433932 114434018 -36349535 + AT_rich Low_complexity Low_complexity 1 86 0 316 310 158 0 chr11 114434265 114434423 -36349130 - HAL1 LINE L1 -17 2490 2308 1659 270 72 20 chr11 114434429 114435162 -36348391 - HAL1 LINE L1 -439 2068 1298 27 49 0 0 chr11 114435164 114435205 -36348348 + AT_rich Low_complexity Low_complexity 1 41 0 230 269 64 0 chr11 114435231 114435309 -36348244 - HAL1 LINE L1 -2423 84 2 25 90 0 0 chr11 114435343 114435410 -36348143 + AT_rich Low_complexity Low_complexity 1 67 0 276 100 0 0 chr11 114436745 114436785 -36346768 + (GGAA)n Simple_repeat Simple_repeat 2 41 0 276 205 64 39 chr11 114436800 114436878 -36346675 - MIR SINE MIR -10 252 173 303 96 0 0 chr11 114436898 114436950 -36346603 + (TA)n Simple_repeat Simple_repeat 2 53 0 4886 130 11 3 chr11 114436951 114437903 -36345650 - L1PA15 LINE L1 -101 6064 5104 191 250 23 0 chr11 114438484 114438528 -36345025 - L2 LINE L2 -9 3263 3219 311 319 109 14 chr11 114438625 114438763 -36344790 - MER5A DNA MER1_type -3 186 36 266 295 119 42 chr11 114438891 114439152 -36344401 - L2 LINE L2 -2702 612 332 1845 150 42 0 chr11 114439552 114439839 -36343714 - AluSx SINE Alu -13 299 1 496 306 33 6 chr11 114440428 114440611 -36342942 + MIR SINE MIR 35 222 -40 964 204 0 0 chr11 114441129 114441305 -36342248 - MER45A DNA AcHobo -1 177 2 293 299 16 47 chr11 114441377 114441504 -36342049 - L2 LINE L2 0 3313 3191 1178 189 23 96 chr11 114441511 114441620 -36341933 + MER58B DNA MER1_type 6 121 -2299 1932 147 4 0 chr11 114441620 114441902 -36341651 + AluSx SINE Alu 1 283 -29 181 0 0 0 chr11 114441902 114441922 -36341631 + (TAAA)n Simple_repeat Simple_repeat 2 148 0 1178 189 23 96 chr11 114441922 114442165 -36341388 + MER58B DNA MER1_type 121 333 -8 1286 315 39 25 chr11 114442295 114442937 -36340616 - L2 LINE L2 -223 3049 2403 341 261 270 14 chr11 114442935 114443157 -36340396 - L2 LINE L2 0 3313 3035 * 195 139 0 0 chr11 114443557 114443593 -36339960 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 1912 158 0 3 chr11 114443835 114444127 -36339426 + AluJb SINE Alu 3 293 -19 3385 119 18 2 chr11 114444179 114444685 -36338868 - MER75 DNA T2_type 0 514 1 768 167 14 0 chr11 114444804 114444976 -36338577 - AluSg/x SINE Alu 0 309 136 2130 121 0 0 chr11 114444978 114445276 -36338277 - AluSx SINE Alu -4 308 11 2078 111 62 31 chr11 114445445 114445798 -36337755 + THE1B LTR MaLR 1 364 0 205 324 28 28 chr11 114445856 114445964 -36337589 + MIR3 SINE MIR 9 116 -92 342 0 0 0 chr11 114446891 114446929 -36336624 + (CA)n Simple_repeat Simple_repeat 2 39 0 440 280 114 34 chr11 114446959 114447134 -36336419 + MIR SINE MIR 64 252 -10 1646 170 24 14 chr11 114447552 114448136 -36335417 - L1M3 LINE L1 -603 5565 4980 3029 168 44 7 chr11 114448164 114448274 -36335279 + L1MB1 LINE L1 5550 5654 -514 2215 105 0 3 chr11 114448274 114448570 -36334983 + AluSg SINE Alu 1 295 -15 3029 168 44 7 chr11 114448570 114449053 -36334500 + L1MB1 LINE L1 5654 6165 -3 453 227 0 8 chr11 114449085 114449189 -36334364 - MER5A DNA MER1_type -83 106 4 1620 228 9 3 chr11 114449199 114449537 -36334016 + MER58B DNA MER1_type 2 341 0 38 39 0 0 chr11 114450766 114450818 -36332735 + AT_rich Low_complexity Low_complexity 1 52 0 235 341 22 33 chr11 114450877 114450968 -36332585 - MIR SINE MIR -153 109 20 445 189 14 21 chr11 114451342 114451485 -36332068 + GA-rich Low_complexity Low_complexity 3 144 0 797 170 137 16 chr11 114451803 114451985 -36331568 + MIR SINE MIR 50 253 -9 1297 62 29 141 chr11 114451985 114452247 -36331306 - AluYb8 SINE Alu 0 318 84 2227 113 3 0 chr11 114453259 114453568 -36329985 - AluSx SINE Alu -2 310 1 485 224 0 0 chr11 114454004 114454102 -36329451 + MER20 DNA MER1_type 122 219 0 265 270 120 0 chr11 114454246 114454346 -36329207 - L1ME3 LINE L1 -46 6116 6005 2326 241 56 8 chr11 114454453 114455216 -36328337 - L1ME3 LINE L1 -219 5951 5155 496 278 94 62 chr11 114455247 114455779 -36327774 - L1ME3 LINE L1 -1140 5006 4458 3645 151 23 8 chr11 114456005 114456620 -36326933 - Tigger1 DNA MER2_type -646 1772 1149 7956 133 24 27 chr11 114456648 114457965 -36325588 - Tigger1 DNA MER2_type -1106 1312 1 741 168 8 8 chr11 114459543 114459674 -36323879 + FLAM_C SINE Alu 2 132 -1 491 311 52 10 chr11 114459876 114460069 -36323484 - MIR SINE MIR -40 222 22 836 209 15 116 chr11 114460395 114460663 -36322890 + MIR SINE MIR 1 241 -21 198 0 0 0 chr11 114461559 114461581 -36321972 + (CA)n Simple_repeat Simple_repeat 2 23 0 5428 216 25 43 chr11 114462057 114464773 -36318780 + L1MD1 LINE L1 3580 6242 0 2160 125 13 0 chr11 114464775 114465078 -36318475 - AluSx SINE Alu -5 307 1 21 82 0 0 chr11 114465461 114465510 -36318043 + AT_rich Low_complexity Low_complexity 1 49 0 230 336 84 20 chr11 114468705 114469013 -36314540 - L2 LINE L2 -224 3089 2767 609 307 78 9 chr11 114469377 114469608 -36313945 - L3b LINE CR1 -135 1448 1202 423 0 0 0 chr11 114469659 114469706 -36313847 + (TG)n Simple_repeat Simple_repeat 2 48 0 201 304 104 35 chr11 114470312 114470427 -36313126 - L2 LINE L2 -8 3264 3142 21 0 0 0 chr11 114470604 114470625 -36312928 + AT_rich Low_complexity Low_complexity 1 21 0 328 231 112 28 chr11 114472463 114472606 -36310947 - L1ME4a LINE L1 -1 6120 5966 867 264 45 1 chr11 114472761 114473032 -36310521 - L1ME2 LINE L1 -1 6161 5867 204 273 0 0 chr11 114473571 114473615 -36309938 + MER5A DNA MER1_type 144 187 -2 * 222 235 20 0 chr11 114473615 114473661 -36309892 - MIR SINE MIR -117 145 99 387 0 0 0 chr11 114474024 114474067 -36309486 + (CA)n Simple_repeat Simple_repeat 2 44 0 390 355 92 21 chr11 114476075 114476216 -36307337 + L2 LINE L2 3122 3272 0 2193 87 0 21 chr11 114476269 114476585 -36306968 + AluSg SINE Alu 1 310 0 441 267 165 6 chr11 114477996 114478172 -36305381 + MIR SINE MIR 46 249 -13 514 281 16 0 chr11 114478519 114478647 -36304906 - L2 LINE L2 -4 3309 3180 195 367 72 43 chr11 114478776 114478915 -36304638 + MIR3 SINE MIR 3 145 -63 * 310 256 37 0 chr11 114478898 114478980 -36304573 + MIR SINE MIR 128 212 -50 259 368 53 12 chr11 114479008 114479179 -36304374 - L2 LINE L2 -229 3043 2866 231 316 98 22 chr11 114479268 114479375 -36304178 - MIR SINE MIR -61 147 31 203 122 0 24 chr11 114479936 114479977 -36303576 + (TTCC)n Simple_repeat Simple_repeat 2 41 0 908 268 17 4 chr11 114481134 114481365 -36302188 - MIR SINE MIR -11 251 18 1500 304 102 18 chr11 114481475 114482404 -36301149 + L2 LINE L2 2065 3072 -241 213 273 52 39 chr11 114484148 114484225 -36299328 + L2 LINE L2 3218 3295 -18 41495 62 2 0 chr11 114486037 114492170 -36291383 - L1PA5 LINE L1 0 6154 11 214 244 0 0 chr11 114492695 114492740 -36290813 + (CA)n Simple_repeat Simple_repeat 1 45 0 225 347 53 0 chr11 114494167 114494242 -36289311 + L2 LINE L2 3145 3223 -49 2222 102 87 0 chr11 114494451 114494786 -36288767 - THE1B LTR MaLR 0 364 1 1766 164 35 27 chr11 114494917 114495289 -36288264 + THE1C LTR MaLR 1 375 0 22 35 0 0 chr11 114496378 114496407 -36287146 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr11 114496498 114496520 -36287033 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 114497205 114497229 -36286324 + AT_rich Low_complexity Low_complexity 1 24 0 429 377 52 4 chr11 114497459 114497690 -36285863 - MIR SINE MIR -1 261 20 351 309 57 80 chr11 114498798 114498991 -36284562 + L1ME3A LINE L1 1872 2068 -4328 1721 153 23 65 chr11 114498991 114499298 -36284255 + AluJb SINE Alu 1 294 -18 351 309 57 80 chr11 114499298 114499628 -36283925 + L1ME3A LINE L1 2068 2383 -4013 1772 182 57 11 chr11 114499650 114500018 -36283535 + MSTD LTR MaLR 10 394 -2 6424 240 38 32 chr11 114500018 114501742 -36281811 + MSTD-int LTR MaLR 2 1735 0 1568 178 32 78 chr11 114501742 114502112 -36281441 + MSTD LTR MaLR 1 353 -43 13496 206 21 58 chr11 114502112 114507449 -36276104 + L1PA15 LINE L1 101 5631 -1185 2149 77 11 4 chr11 114507449 114507721 -36275832 + AluY SINE Alu 36 309 -2 13496 206 21 58 chr11 114507721 114508056 -36275497 + L1PA15 LINE L1 5631 5977 -839 2032 155 27 24 chr11 114508056 114508430 -36275123 - THE1C LTR MaLR 0 375 1 13496 206 21 58 chr11 114508430 114508860 -36274693 + L1PA15 LINE L1 5977 5937 -879 1027 24 24 0 chr11 114508860 114508985 -36274568 + L1PA2 LINE L1 6024 6151 -4 13496 206 21 58 chr11 114508985 114509818 -36273735 + L1PA15 LINE L1 5936 6798 -18 273 189 0 0 chr11 114509827 114509880 -36273673 + MSTD LTR MaLR 344 396 0 527 283 51 41 chr11 114509921 114510550 -36273003 + L1ME3A LINE L1 2423 3057 -3158 309 294 93 31 chr11 114510922 114511307 -36272246 - L1MEc LINE L1 -4846 1550 1142 796 259 20 5 chr11 114511307 114511504 -36272049 + MER77 LTR ERV1 404 603 -2 692 283 117 50 chr11 114511510 114512767 -36270786 + L1ME3A LINE L1 4451 5954 -285 21 36 0 0 chr11 114513243 114513271 -36270282 + AT_rich Low_complexity Low_complexity 1 28 0 1986 131 55 0 chr11 114513718 114514009 -36269544 + AluSx SINE Alu 1 307 -5 350 202 108 39 chr11 114515415 114515544 -36268009 + MIR SINE MIR 113 250 -12 590 268 147 0 chr11 114516123 114516280 -36267273 - MER5A DNA MER1_type 0 189 10 322 195 65 0 chr11 114517426 114517503 -36266050 - MER96B DNA MER1_type? -182 235 154 519 138 0 0 chr11 114517505 114517592 -36265961 + (TCCC)n Simple_repeat Simple_repeat 4 90 0 1954 149 7 3 chr11 114517582 114518025 -36265528 - AluSx SINE Alu 0 444 1 452 173 96 0 chr11 114518028 114518132 -36265421 + MER96B DNA MER1_type? 279 392 -25 741 281 22 103 chr11 114518935 114519302 -36264251 + L2 LINE L2 2569 2905 -409 402 252 104 22 chr11 114519313 114519448 -36264105 + MIR SINE MIR 89 234 -28 4066 68 22 13 chr11 114519553 114520101 -36263452 + MER41A LTR ERV1 1 553 -1 236 221 87 77 chr11 114521237 114521341 -36262212 + MIR SINE MIR 117 221 -41 1581 214 129 55 chr11 114521360 114521940 -36261613 - MLT1E3 LTR MaLR 0 624 2 227 357 96 28 chr11 114522208 114522457 -36261096 + L3b LINE CR1 1307 1572 -11 927 267 74 17 chr11 114523985 114524376 -36259177 - MLT1H1 LTR MaLR -164 378 1 527 269 61 18 chr11 114525113 114525328 -36258225 - MIR SINE MIR -30 232 9 4883 99 7 15 chr11 114525574 114526297 -36257256 - L1PA10 LINE L1 -121 6047 5329 2579 75 0 0 chr11 114526297 114526604 -36256949 - AluY SINE Alu -4 307 1 4883 99 7 15 chr11 114526604 114526624 -36256929 - L1PA10 LINE L1 -839 5329 5310 13406 142 3 12 chr11 114526624 114528986 -36254567 + L1PA10 LINE L1 2954 5295 -851 192 135 0 0 chr11 114528991 114529028 -36254525 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 527 289 70 16 chr11 114529278 114529501 -36254052 - MIR SINE MIR -13 249 16 255 267 0 40 chr11 114529776 114529851 -36253702 + MIR3 SINE MIR 94 165 -43 222 394 71 0 chr11 114530264 114530363 -36253190 - L3 LINE CR1 -5 1572 1467 311 192 13 0 chr11 114530860 114530938 -36252615 + (TA)n Simple_repeat Simple_repeat 2 80 0 306 0 0 0 chr11 114530973 114531007 -36252546 + (TG)n Simple_repeat Simple_repeat 2 35 0 2369 83 3 6 chr11 114532195 114532507 -36251046 - AluY SINE Alu 0 311 1 758 234 21 36 chr11 114532575 114532603 -36250950 + MER5A DNA MER1_type 1 28 -161 2002 188 11 3 chr11 114532603 114532965 -36250588 - MLT1A1 LTR MaLR 0 365 1 758 234 21 36 chr11 114532965 114533128 -36250425 + MER5A DNA MER1_type 28 189 0 767 227 79 19 chr11 114533200 114533416 -36250137 - MER96B DNA MER1_type? -182 235 7 639 274 98 32 chr11 114534242 114534611 -36248942 + LTR16A1 LTR ERVL 2 394 -63 2323 322 44 23 chr11 114534658 114535873 -36247680 + HERV16 LTR ERVL 6 1246 -3750 318 263 44 22 chr11 114536137 114536274 -36247279 - LTR41 LTR ERVL -623 150 11 7599 307 58 13 chr11 114536609 114538605 -36244948 - HERVL LTR ERVL -336 5428 3243 207 0 0 0 chr11 114538605 114538628 -36244925 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7599 307 58 13 chr11 114538628 114539715 -36243838 - HERVL LTR ERVL -2521 3243 2206 682 315 32 8 chr11 114539738 114540217 -36243336 - HERVL LTR ERVL -3678 2086 1524 441 360 15 11 chr11 114540219 114540483 -36243070 - HERVL LTR ERVL -4708 1056 792 372 316 46 39 chr11 114540548 114540833 -36242720 - HERVL LTR ERVL -5125 639 353 265 320 10 0 chr11 114541088 114541185 -36242368 - HERVL LTR ERVL -2668 2986 2889 307 222 174 87 chr11 114541243 114541450 -36242103 - LTR41 LTR ERVL -13 760 536 2282 179 5 2 chr11 114541492 114541905 -36241648 - MER44D DNA MER2_type -1 604 319 2121 181 46 18 chr11 114541914 114542350 -36241203 - Tigger7 DNA MER2_type -285 448 1 225 0 0 0 chr11 114543466 114543491 -36240062 + (A)n Simple_repeat Simple_repeat 1 25 0 728 310 23 23 chr11 114543698 114543956 -36239597 + MIR SINE MIR 5 262 0 3172 123 18 157 chr11 114543987 114544184 -36239369 + Tigger3b DNA MER2_type 13 236 -2792 579 174 68 61 chr11 114544184 114544316 -36239237 + AluJo/FLAM SINE Alu 1 133 -169 3172 123 18 157 chr11 114544318 114544909 -36238644 + Tigger3b DNA MER2_type 234 814 -417 207 0 0 0 chr11 114545427 114545450 -36238103 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1918 175 61 0 chr11 114545450 114545845 -36237708 + Tigger3b DNA MER2_type 813 1231 -1 240 245 167 0 chr11 114545862 114545964 -36237589 + MIR SINE MIR 74 192 -70 243 0 0 0 chr11 114546417 114546444 -36237109 + (CA)n Simple_repeat Simple_repeat 2 28 0 225 0 0 0 chr11 114546444 114546469 -36237084 + (GA)n Simple_repeat Simple_repeat 1 25 0 1628 123 26 92 chr11 114546469 114546641 -36236912 - MLT2C2 LTR ERVL -48 349 206 1908 82 4 0 chr11 114546641 114546884 -36236669 - AluSp SINE Alu -29 284 41 1628 123 26 92 chr11 114546884 114547078 -36236475 - MLT2C2 LTR ERVL -191 206 1 190 316 193 9 chr11 114547095 114547209 -36236344 - L2 LINE L2 -201 3071 2937 262 392 68 0 chr11 114547475 114547651 -36235902 - MER5A DNA MER1_type -1 188 1 2309 119 0 0 chr11 114548028 114548340 -36235213 - AluJb SINE Alu 0 312 1 199 255 0 0 chr11 114550654 114550701 -36232852 - L2 LINE L2 -4 3268 3222 * 282 353 65 29 chr11 114550697 114550836 -36232717 - MIR SINE MIR -72 190 47 1235 204 21 70 chr11 114551020 114551218 -36232335 - MLT1A2 LTR MaLR -6 368 197 428 0 19 0 chr11 114551218 114551270 -36232283 + (GA)n Simple_repeat Simple_repeat 1 53 0 1235 204 21 70 chr11 114551270 114551458 -36232095 - MLT1A2 LTR MaLR -177 197 1 318 283 55 33 chr11 114555379 114555531 -36228022 + MIR SINE MIR 40 198 -64 273 341 44 22 chr11 114555846 114555937 -36227616 - L2 LINE L2 -6 3266 3174 442 321 60 0 chr11 114556659 114556827 -36226726 + MER5B DNA MER1_type 1 178 0 187 263 18 18 chr11 114559020 114559077 -36224476 - MIR3 SINE MIR -2 206 150 272 376 37 0 chr11 114559368 114559477 -36224076 - MIR SINE MIR -64 144 32 275 326 11 22 chr11 114559505 114559594 -36223959 - L2 LINE L2 -38 3275 3188 231 355 53 0 chr11 114559839 114559915 -36223638 - L2 LINE L2 -24 3289 3210 561 262 195 9 chr11 114560291 114560512 -36223041 + MIR SINE MIR 1 262 0 1617 208 6 19 chr11 114561103 114561329 -36222224 - MLT1A1 LTR MaLR 0 365 144 1697 198 30 25 chr11 114561329 114561692 -36221861 + MLT1A1 LTR MaLR 1 365 0 1617 208 6 19 chr11 114561692 114561825 -36221728 - MLT1A1 LTR MaLR -221 144 11 285 75 0 0 chr11 114562839 114562879 -36220674 + (CA)n Simple_repeat Simple_repeat 1 40 0 219 282 42 14 chr11 114563906 114563977 -36219576 - L2 LINE L2 0 3313 3241 699 180 132 0 chr11 114564510 114564677 -36218876 + MER5A DNA MER1_type 1 189 0 640 220 100 20 chr11 114565329 114565479 -36218074 + MER5A DNA MER1_type 2 163 -26 300 335 69 23 chr11 114565495 114565668 -36217885 - LTR33 LTR ERVL -340 181 1 738 71 0 0 chr11 114565736 114565834 -36217719 - AluSc SINE Alu -15 294 197 2048 251 67 29 chr11 114565835 114566464 -36217089 + L2 LINE L2 2102 2754 -560 359 322 61 41 chr11 114566465 114566760 -36216793 - MLT1I LTR MaLR 0 409 109 265 224 9 86 chr11 114566766 114566882 -36216671 - MLT1H LTR MaLR -16 533 427 230 261 78 83 chr11 114566909 114567089 -36216464 - MLT1I LTR MaLR -241 308 130 359 224 47 0 chr11 114567197 114567282 -36216271 - MLT1I LTR MaLR -302 107 19 909 241 174 35 chr11 114567304 114567792 -36215761 + L2 LINE L2 2771 3313 0 1235 161 9 14 chr11 114568009 114568226 -36215327 + MER20 DNA MER1_type 1 216 -3 378 298 43 14 chr11 114568286 114568427 -36215126 + L2 LINE L2 3169 3313 0 180 179 0 0 chr11 114568799 114568838 -36214715 + T-rich Low_complexity Low_complexity 1 39 0 1101 301 78 20 chr11 114569242 114569886 -36213667 + L2 LINE L2 2356 3056 -257 404 317 79 20 chr11 114570456 114570658 -36212895 + L2 LINE L2 3099 3312 -1 2031 85 7 4 chr11 114570930 114571200 -36212353 + AluY SINE Alu 28 298 -13 196 221 156 13 chr11 114571231 114571308 -36212245 + MIR SINE MIR 149 236 -26 372 239 51 17 chr11 114571325 114571439 -36212114 - MER82 DNA MER2_type 0 653 536 2029 120 23 20 chr11 114571439 114571788 -36211765 + THE1B LTR MaLR 1 350 -14 2284 173 21 27 chr11 114571803 114572283 -36211270 - MER82 DNA MER2_type -150 503 27 1359 191 31 51 chr11 114572311 114572550 -36211003 + MER2 DNA MER2_type 1 232 -112 1916 138 21 0 chr11 114572550 114572840 -36210713 - AluSx SINE Alu -16 296 1 1359 191 31 51 chr11 114572840 114572951 -36210602 + MER2 DNA MER2_type 232 344 0 948 193 45 10 chr11 114573419 114573621 -36209932 - MER3 DNA MER1_type 0 209 1 4479 31 6 2 chr11 114573678 114574218 -36209335 + L1PA4 LINE L1 5612 6153 -2 822 348 31 9 chr11 114574368 114574787 -36208766 + L2 LINE L2 2150 2577 -737 271 308 124 49 chr11 114574839 114575105 -36208448 + L2 LINE L2 3013 3298 -15 263 207 69 0 chr11 114575425 114575483 -36208070 - MER91C DNA MER1_type -61 79 18 203 222 19 37 chr11 114575700 114575754 -36207799 - MIR SINE MIR -133 75 23 216 216 39 118 chr11 114575950 114576052 -36207501 + L2 LINE L2 3220 3313 0 288 154 0 0 chr11 114577212 114577264 -36206289 + (TA)n Simple_repeat Simple_repeat 2 53 0 2044 103 27 3 chr11 114578025 114578317 -36205236 - AluSc SINE Alu -10 299 1 189 107 0 0 chr11 114578322 114578350 -36205203 + (T)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr11 114580468 114580489 -36203064 + AT_rich Low_complexity Low_complexity 1 21 0 16569 126 27 85 chr11 114581517 114585133 -36198420 + L1PA7 LINE L1 12 3416 -2730 2114 168 16 30 chr11 114585146 114585575 -36197978 - LTR3 LTR ERVK -7 425 3 13897 85 11 1 chr11 114585576 114588301 -36195252 + L1PA7 LINE L1 3410 6154 0 201 217 167 33 chr11 114588853 114588913 -36194640 - MIR SINE MIR -108 154 87 2365 106 3 0 chr11 114590701 114591013 -36192540 - AluSp SINE Alu 0 313 1 297 246 79 44 chr11 114592214 114592328 -36191225 - MIR3 SINE MIR -76 132 15 510 170 9 47 chr11 114592699 114592805 -36190748 - Tigger5 DNA MER2_type 0 2323 2222 930 230 10 0 chr11 114593023 114593227 -36190326 - MER3 DNA MER1_type -1 208 3 1038 218 47 81 chr11 114593576 114593763 -36189790 + MER39 LTR ERV1 55 247 -295 1446 162 6 100 chr11 114593763 114594084 -36189469 - AluJo SINE Alu -11 291 1 1038 218 47 81 chr11 114594084 114594408 -36189145 + MER39 LTR ERV1 247 542 0 3994 58 19 0 chr11 114596026 114596539 -36187014 - L1PA7 LINE L1 -8 6146 5624 241 265 46 86 chr11 114596656 114596807 -36186746 - MIR SINE MIR -56 206 62 302 182 0 0 chr11 114596883 114596938 -36186615 - L1MC4 LINE L1 -1340 6702 6648 2328 73 17 0 chr11 114596946 114597234 -36186319 - AluSq SINE Alu -20 293 1 547 310 53 40 chr11 114597268 114597494 -36186059 + MIR SINE MIR 12 240 -22 680 331 11 0 chr11 114597878 114598062 -36185491 - MER91A DNA MER1_type -10 186 1 22 0 0 0 chr11 114598732 114598754 -36184799 + AT_rich Low_complexity Low_complexity 1 22 0 351 250 81 44 chr11 114598935 114599071 -36184482 + MIR SINE MIR 2 142 -120 478 264 16 88 chr11 114601644 114601826 -36181727 - MIR SINE MIR -48 214 46 319 176 11 110 chr11 114602381 114602472 -36181081 - MLT1D LTR MaLR -50 455 374 1312 153 5 0 chr11 114602781 114602997 -36180556 - AluSg/x SINE Alu 0 309 93 1670 155 26 7 chr11 114603356 114603711 -36179842 + Tigger5 DNA MER2_type 1 2321 -2 505 254 51 34 chr11 114604846 114605023 -36178530 - MIR SINE MIR -13 249 70 256 342 130 0 chr11 114605276 114605437 -36178116 + MIR SINE MIR 13 194 -68 1952 152 8 72 chr11 114605686 114606075 -36177478 - THE1B LTR MaLR 0 364 1 311 292 34 67 chr11 114606990 114607168 -36176385 - MIR SINE MIR -71 191 20 185 83 28 0 chr11 114608009 114608045 -36175508 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1671 164 4 7 chr11 114608050 114608324 -36175229 - AluJo SINE Alu -34 278 6 29 28 0 0 chr11 114608403 114608439 -36175114 + AT_rich Low_complexity Low_complexity 1 36 0 10612 26 0 0 chr11 114608759 114610776 -36172777 - L1PA4 LINE L1 -3 6152 4136 312 273 13 0 chr11 114612214 114612291 -36171262 - L2 LINE L2 -5 3308 3231 429 254 17 55 chr11 114612301 114612482 -36171071 - MER5B DNA MER1_type -1 177 4 343 287 93 23 chr11 114612765 114612894 -36170659 - MIR SINE MIR -91 171 34 200 347 41 25 chr11 114613990 114614111 -36169442 + MIR SINE MIR 25 147 -61 1350 174 8 8 chr11 114614365 114614601 -36168952 + MER46A DNA MER2_type 1 236 0 420 311 83 44 chr11 114619165 114619345 -36164208 + MIR SINE MIR 50 236 -26 313 54 0 0 chr11 114620095 114620132 -36163421 + L1PA10 LINE L1 6056 6092 -76 186 43 0 0 chr11 114620150 114620173 -36163380 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2397 101 0 0 chr11 114620200 114620507 -36163046 - AluSx SINE Alu -5 307 1 206 323 135 0 chr11 114620810 114620906 -36162647 - L2 LINE L2 -5 3267 3159 324 310 11 58 chr11 114621174 114621348 -36162205 - L2 LINE L2 -943 2371 2206 366 347 20 20 chr11 114621400 114621471 -36162082 - MIR3 SINE MIR -14 194 124 2076 108 3 49 chr11 114621471 114621812 -36161741 + AluSq SINE Alu 1 327 0 366 347 20 20 chr11 114621812 114621889 -36161664 - MIR3 SINE MIR -83 125 45 902 293 89 27 chr11 114622526 114623183 -36160370 + L2 LINE L2 2584 3277 -36 341 258 17 67 chr11 114623770 114623890 -36159663 - MIR SINE MIR -75 133 20 26 50 0 0 chr11 114623951 114623991 -36159562 + AT_rich Low_complexity Low_complexity 1 40 0 203 232 58 0 chr11 114624348 114624417 -36159136 + (CATA)n Simple_repeat Simple_repeat 2 74 0 2910 0 0 0 chr11 114626087 114626398 -36157155 + AluYa5 SINE Alu 1 311 0 822 254 10 22 chr11 114626838 114627149 -36156404 + AluYa5 SINE Alu 5 311 0 31 44 0 0 chr11 114627733 114627778 -36155775 + AT_rich Low_complexity Low_complexity 1 45 0 7324 33 7 0 chr11 114628037 114629216 -36154337 - L1PA3 LINE L1 -20 6135 4952 3427 23 0 0 chr11 114629216 114629615 -36153938 + L1PA3 LINE L1 4535 4933 -1213 203 390 0 21 chr11 114630051 114630146 -36153407 - MIR SINE MIR -12 250 158 219 133 0 0 chr11 114630540 114630570 -36152983 + L2 LINE L2 3217 3246 -26 349 273 33 78 chr11 114632568 114632639 -36150914 + L2 LINE L2 3083 3156 -157 1361 222 54 17 chr11 114632639 114632991 -36150562 - MLT1A1 LTR MaLR 0 365 1 349 273 33 78 chr11 114632991 114633161 -36150392 + L2 LINE L2 3156 3313 0 258 214 18 0 chr11 114633214 114633270 -36150283 + L2 LINE L2 3216 3272 0 287 265 68 51 chr11 114633628 114633745 -36149808 - L2 LINE L2 -2 3311 3193 440 271 85 6 chr11 114634603 114634780 -36148773 + MIR SINE MIR 18 208 -54 787 257 48 9 chr11 114634904 114635114 -36148439 + MIR SINE MIR 26 243 -19 272 224 45 15 chr11 114635509 114635576 -36147977 - L2 LINE L2 -22 3291 3223 1038 301 46 12 chr11 114636002 114636348 -36147205 + MLT1I LTR MaLR 35 392 -17 204 242 0 76 chr11 114636404 114636470 -36147083 - MIR SINE MIR -127 81 21 279 309 75 50 chr11 114638783 114638984 -36144569 + L2 LINE L2 295 500 -2814 676 354 143 27 chr11 114639762 114641045 -36142508 + L2 LINE L2 1678 3096 -176 209 222 148 0 chr11 114641093 114641147 -36142406 + L2 LINE L2 3250 3311 -2 198 0 0 0 chr11 114641430 114641452 -36142101 + (T)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr11 114642526 114642547 -36141006 + (T)n Simple_repeat Simple_repeat 1 21 0 254 297 24 127 chr11 114643592 114643962 -36139591 + L3b LINE CR1 1105 1436 -147 942 167 8 96 chr11 114645194 114645433 -36138120 - MER20 DNA MER1_type -1 218 1 378 276 80 50 chr11 114645983 114646182 -36137371 - L2 LINE L2 0 3313 3109 2182 85 0 34 chr11 114646186 114646480 -36137073 - AluY SINE Alu -12 299 16 216 349 0 12 chr11 114646666 114646752 -36136801 - MIR SINE MIR -75 133 49 273 307 78 65 chr11 114646845 114647138 -36136415 - L2 LINE L2 -428 2886 2590 10583 80 8 41 chr11 114647503 114649947 -36133606 - L1PA8 LINE L1 -1 6171 3802 4224 90 8 3 chr11 114649947 114650558 -36132995 + L1PA8 LINE L1 3196 3809 -2337 331 285 54 31 chr11 114652011 114652141 -36131412 - MER5B DNA MER1_type -1 177 45 22 35 0 0 chr11 114653066 114653095 -36130458 + AT_rich Low_complexity Low_complexity 1 29 0 1183 216 93 38 chr11 114653691 114654034 -36129519 + MLT1A1 LTR MaLR 1 362 -3 1735 147 96 67 chr11 114654062 114654478 -36129075 + MSTC LTR MaLR 1 428 0 284 330 163 19 chr11 114654506 114654721 -36128832 - MIR SINE MIR 0 262 17 211 245 202 0 chr11 114655390 114655484 -36128069 - L2 LINE L2 -15 3298 3186 7443 152 26 9 chr11 114655519 114657624 -36125929 + L1PA13 LINE L1 4046 6163 0 26 0 0 0 chr11 114657826 114657852 -36125701 + AT_rich Low_complexity Low_complexity 1 26 0 386 178 59 6 chr11 114657852 114658021 -36125532 + (TA)n Simple_repeat Simple_repeat 2 179 0 344 216 34 17 chr11 114658036 114658212 -36125341 + (TTTAA)n Simple_repeat Simple_repeat 1 179 0 * 442 253 0 6 chr11 114658105 114658337 -36125216 + (TTTA)n Simple_repeat Simple_repeat 1 230 0 1611 169 21 18 chr11 114658337 114658621 -36124932 - AluJo SINE Alu -24 288 4 4078 129 4 67 chr11 114659654 114660388 -36123165 + LTR8 LTR ERV1 2 689 -2 188 297 47 0 chr11 114661831 114661895 -36121658 + MIR SINE MIR 75 141 -121 296 312 0 46 chr11 114662040 114662149 -36121404 - MIR SINE MIR -20 242 139 261 234 0 0 chr11 114662198 114662245 -36121308 + L2 LINE L2 3188 3234 -79 234 250 270 10 chr11 114662924 114663024 -36120529 - L2 LINE L2 0 3313 3188 218 222 0 16 chr11 114663032 114663095 -36120458 + (TAA)n Simple_repeat Simple_repeat 1 62 0 487 322 61 47 chr11 114663383 114663746 -36119807 + L2 LINE L2 2921 3288 -25 2417 80 0 0 chr11 114663980 114664281 -36119272 + AluY SINE Alu 1 301 -10 245 241 0 17 chr11 114664431 114664489 -36119064 + CT-rich Low_complexity Low_complexity 3 59 0 412 200 126 37 chr11 114664860 114664995 -36118558 - MIR SINE MIR 0 262 116 217 270 197 36 chr11 114665527 114665664 -36117889 - MIR SINE MIR -12 250 92 279 0 0 0 chr11 114666178 114666209 -36117344 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1461 175 56 8 chr11 114666211 114666350 -36117203 - AluJb SINE Alu -31 281 150 189 0 0 0 chr11 114666350 114666371 -36117182 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1461 175 56 8 chr11 114666371 114666499 -36117054 - AluJb SINE Alu -162 150 1 22 0 0 0 chr11 114667746 114667768 -36115785 + AT_rich Low_complexity Low_complexity 1 22 0 199 258 195 39 chr11 114667773 114667901 -36115652 + L3 LINE CR1 1062 1209 -368 1795 181 3 7 chr11 114668003 114668302 -36115251 - AluJo SINE Alu -14 298 1 401 309 15 15 chr11 114668320 114668456 -36115097 + L2 LINE L2 3137 3272 0 249 355 145 20 chr11 114668517 114668717 -36114836 + L3 LINE CR1 1351 1575 -2 236 246 18 100 chr11 114670607 114670717 -36112836 + MIR SINE MIR 116 216 -46 2438 179 113 106 chr11 114671209 114672014 -36111539 + MER21B LTR ERV1 1 811 -52 184 245 61 0 chr11 114673560 114673609 -36109944 + L2 LINE L2 3262 3313 0 303 300 14 57 chr11 114674007 114674147 -36109406 + MER77 LTR ERV1 64 197 -408 * 1474 269 51 72 chr11 114674120 114674748 -36108805 + MER21B LTR ERV1 98 712 -151 1682 172 58 17 chr11 114675369 114675729 -36107824 + THE1C LTR MaLR 1 375 0 645 271 19 9 chr11 114675819 114676033 -36107520 + MER113 DNA MER1_type? 2 217 -304 1570 172 74 21 chr11 114677364 114677690 -36105863 - MER2 DNA MER2_type 0 344 2 212 179 0 0 chr11 114677854 114677893 -36105660 - MIR SINE MIR -24 238 200 726 233 16 63 chr11 114677958 114677996 -36105557 - MIR SINE MIR -78 184 146 2383 99 0 0 chr11 114677996 114678299 -36105254 - AluSx SINE Alu -5 307 5 726 233 16 63 chr11 114678299 114678449 -36105104 - MIR SINE MIR -116 146 5 660 260 99 25 chr11 114678708 114678950 -36104603 - MIR SINE MIR 0 262 3 899 249 0 0 chr11 114679261 114679450 -36104103 + MER5A DNA MER1_type 1 189 0 3736 162 117 8 chr11 114679563 114680308 -36103245 + LTR1B LTR ERV1 1 826 0 274 260 104 0 chr11 114681871 114681967 -36101586 + L2 LINE L2 3158 3263 -9 372 43 0 0 chr11 114682555 114682601 -36100952 + (TTA)n Simple_repeat Simple_repeat 1 46 0 33 25 0 0 chr11 114684512 114684552 -36099001 + AT_rich Low_complexity Low_complexity 1 40 0 537 309 81 64 chr11 114684601 114685304 -36098249 + HsTC2 DNA Tc2 8 722 -1176 470 208 99 0 chr11 114685820 114685921 -36097632 - MLT1I LTR MaLR -46 363 253 2059 175 149 69 chr11 114686006 114686725 -36096828 + LTR1B LTR ERV1 1 777 -8 337 287 111 33 chr11 114687097 114687278 -36096275 + MER117 DNA MER1_type 2 196 -1 1607 183 4 4 chr11 114687364 114687660 -36095893 + AluJo SINE Alu 15 310 0 990 258 128 32 chr11 114689245 114689683 -36093870 - MLT1L LTR MaLR -17 598 119 1796 204 17 3 chr11 114690081 114690438 -36093115 + MLT1A1 LTR MaLR 1 362 -3 186 327 136 18 chr11 114691302 114691412 -36092141 + L2 LINE L2 3191 3313 0 613 315 138 34 chr11 114692039 114692423 -36091130 + L2 LINE L2 2845 3268 -4 329 339 0 15 chr11 114692785 114692915 -36090638 + MER117 DNA MER1_type 56 183 -14 326 308 58 25 chr11 114692983 114693103 -36090450 + MIR SINE MIR 65 188 -74 181 280 40 40 chr11 114694230 114694305 -36089248 - MER5C DNA MER1_type -249 75 1 466 272 35 76 chr11 114694441 114694899 -36088654 + MLT1H LTR MaLR 1 525 -17 182 261 15 15 chr11 114695834 114695964 -36087589 + (TA)n Simple_repeat Simple_repeat 1 130 0 21 36 0 0 chr11 114696034 114696062 -36087491 + AT_rich Low_complexity Low_complexity 1 28 0 1596 170 119 0 chr11 114697583 114697894 -36085659 + MER7A DNA MER2_type 1 346 0 395 278 0 26 chr11 114698609 114698724 -36084829 - LTR16C LTR ERVL -1 490 379 422 286 8 23 chr11 114700602 114700735 -36082818 - MIR SINE MIR -72 190 60 2449 66 7 0 chr11 114701045 114701346 -36082207 + AluY SINE Alu 1 303 -8 186 103 0 0 chr11 114701554 114701583 -36081970 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1903 153 31 6 chr11 114703041 114703393 -36080160 + MER46B DNA MER2_type 1 236 0 6459 89 7 3 chr11 114704100 114705299 -36078254 + L1PA10 LINE L1 4967 6168 0 204 40 0 0 chr11 114705335 114705360 -36078193 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 21 36 0 0 chr11 114705985 114706013 -36077540 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr11 114706183 114706209 -36077344 + (TG)n Simple_repeat Simple_repeat 2 27 0 26 0 0 0 chr11 114706209 114706235 -36077318 + AT_rich Low_complexity Low_complexity 1 26 0 220 186 34 34 chr11 114706439 114706498 -36077055 + L3 LINE CR1 1512 1570 -7 21 36 0 0 chr11 114707085 114707113 -36076440 + AT_rich Low_complexity Low_complexity 1 28 0 349 323 53 30 chr11 114707352 114707485 -36076068 + L2 LINE L2 3122 3257 -15 2437 71 0 0 chr11 114707779 114708074 -36075479 - AluY SINE Alu -15 296 2 228 67 0 0 chr11 114708686 114708716 -36074837 + (T)n Simple_repeat Simple_repeat 1 30 0 240 369 107 44 chr11 114708963 114709188 -36074365 + L2 LINE L2 2998 3236 -36 1771 165 0 17 chr11 114709295 114709586 -36073967 + AluJo SINE Alu 6 291 -21 21 0 0 0 chr11 114709932 114709953 -36073600 + GC_rich Low_complexity Low_complexity 1 21 0 490 311 98 35 chr11 114713092 114713407 -36070146 - L3 LINE CR1 -123 1454 1120 345 316 44 15 chr11 114713670 114713806 -36069747 - MIR SINE MIR -11 251 112 234 173 160 53 chr11 114713836 114713911 -36069642 + MER112 DNA MER1_type 1 83 -177 211 317 17 0 chr11 114716350 114716410 -36067143 - L2 LINE L2 -4 3309 3249 2128 188 54 2 chr11 114716681 114717086 -36066467 - MSTB LTR MaLR 0 426 1 24 67 0 0 chr11 114717647 114717692 -36065861 + AT_rich Low_complexity Low_complexity 1 45 0 2141 89 0 0 chr11 114717887 114718194 -36065359 + AluY SINE Alu 1 307 0 6656 65 3 0 chr11 114719876 114720722 -36062831 - L1PA7 LINE L1 -3 6151 5303 280 368 8 38 chr11 114721852 114721985 -36061568 - L2 LINE L2 0 3272 3144 499 232 44 57 chr11 114722020 114722213 -36061340 - MIR SINE MIR -23 239 47 540 321 96 26 chr11 114722247 114722667 -36060886 - L2 LINE L2 -145 3168 2700 219 36 0 0 chr11 114722669 114722697 -36060856 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1374 303 99 29 chr11 114722712 114723580 -36059973 - L2 LINE L2 -1154 2160 1232 447 280 23 15 chr11 114723611 114723743 -36059810 + MIR3 SINE MIR 12 144 -64 22 0 0 0 chr11 114724947 114724969 -36058584 + AT_rich Low_complexity Low_complexity 1 22 0 1961 201 3 0 chr11 114724976 114725345 -36058208 - L1MB5 LINE L1 0 6174 5805 306 219 122 41 chr11 114727543 114727666 -36055887 + L1M LINE L1 5296 5428 -736 228 298 170 45 chr11 114727684 114728043 -36055510 - L2 LINE L2 -1386 1928 1525 198 289 171 0 chr11 114728429 114728505 -36055048 + L2 LINE L2 3225 3313 0 237 326 95 7 chr11 114728517 114728664 -36054889 + MIR SINE MIR 103 262 0 1182 208 32 65 chr11 114729428 114729799 -36053754 + MLT1C LTR MaLR 1 359 -108 24 53 0 0 chr11 114729843 114729881 -36053672 + AT_rich Low_complexity Low_complexity 1 38 0 3035 215 63 43 chr11 114729892 114729978 -36053575 + L1ME1 LINE L1 4312 4395 -1939 1940 118 4 4 chr11 114729978 114730257 -36053296 + AluSc SINE Alu 1 279 -30 3035 215 63 43 chr11 114730257 114730523 -36053030 + L1ME1 LINE L1 4395 4654 -1680 1653 159 7 0 chr11 114730523 114730818 -36052735 + L1PA16 LINE L1 5861 6157 -9 3035 215 63 43 chr11 114730818 114732295 -36051258 + L1ME1 LINE L1 4654 6334 0 189 298 181 21 chr11 114732926 114733020 -36050533 + L2 LINE L2 3175 3283 -30 269 120 187 13 chr11 114733876 114733951 -36049602 - L1MB8 LINE L1 0 6178 6091 1148 164 27 0 chr11 114733973 114734193 -36049360 - L1MB4 LINE L1 -12 6168 5943 515 144 33 0 chr11 114734197 114734287 -36049266 - L1MB4 LINE L1 -288 5892 5800 351 272 73 38 chr11 114734285 114734546 -36049007 + L1M4 LINE L1 5002 5271 -875 * 356 136 0 15 chr11 114734606 114734682 -36048871 + L1M4 LINE L1 5730 5801 -373 1966 145 13 0 chr11 114734730 114735033 -36048520 - AluSx SINE Alu -5 307 1 257 0 30 0 chr11 114736457 114736490 -36047063 + (GA)n Simple_repeat Simple_repeat 1 34 0 1807 132 69 36 chr11 114736675 114737038 -36046515 - THE1C LTR MaLR 0 375 1 3354 88 9 0 chr11 114738000 114738441 -36045112 + MLT2A2 LTR ERVL 1 445 -8 21 0 0 0 chr11 114738657 114738678 -36044875 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 114739130 114739152 -36044401 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 114739404 114739426 -36044127 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 114739737 114739761 -36043792 + AT_rich Low_complexity Low_complexity 1 24 0 220 250 0 0 chr11 114740087 114740139 -36043414 - L2 LINE L2 -16 3297 3246 258 237 51 17 chr11 114741344 114741403 -36042150 - MIR SINE MIR -174 88 28 4139 203 89 62 chr11 114741856 114742715 -36040838 - L1MC4 LINE L1 -32 8010 7176 2457 64 0 0 chr11 114742715 114743010 -36040543 + AluY SINE Alu 1 295 -16 4139 203 89 62 chr11 114743010 114743769 -36039784 - L1MC4 LINE L1 -866 7176 6237 1411 270 26 14 chr11 114743782 114744201 -36039352 - L1MC4 LINE L1 -1907 5901 5478 22 0 0 0 chr11 114744208 114744230 -36039323 + AT_rich Low_complexity Low_complexity 1 22 0 438 178 93 17 chr11 114744244 114744362 -36039191 - L1MB1 LINE L1 -22 6146 6020 258 250 0 0 chr11 114744366 114744446 -36039107 - L1MC4 LINE L1 -2359 5449 5370 238 227 10 10 chr11 114744461 114744558 -36038995 + (TATATG)n Simple_repeat Simple_repeat 2 98 0 202 74 0 0 chr11 114744559 114744586 -36038967 + (TG)n Simple_repeat Simple_repeat 2 28 0 380 298 27 86 chr11 114744609 114744945 -36038608 - L1MC4 LINE L1 -817 5329 5014 801 289 85 58 chr11 114744947 114745947 -36037606 - L1MC4 LINE L1 -1214 4932 3906 322 281 212 52 chr11 114747143 114747488 -36036065 + MLT1H LTR MaLR 137 536 -13 237 256 22 44 chr11 114747799 114747889 -36035664 + L1MC/D LINE L1 5840 5927 -432 33 43 0 0 chr11 114748049 114748096 -36035457 + AT_rich Low_complexity Low_complexity 1 47 0 988 153 11 34 chr11 114748630 114748806 -36034747 - AluJo SINE Alu -15 297 126 2012 155 10 39 chr11 114749057 114749443 -36034110 + THE1C LTR MaLR 1 375 0 192 326 10 31 chr11 114749700 114749798 -36033755 - MER5B DNA MER1_type -6 172 77 2430 148 7 47 chr11 114749834 114750286 -36033267 + Tigger2a DNA MER2_type 1 434 0 2190 122 0 3 chr11 114752512 114752823 -36030730 - AluSg SINE Alu 0 310 1 1748 242 13 12 chr11 114753868 114754258 -36029295 + MLT1F LTR MaLR 104 488 -54 241 196 18 0 chr11 114754302 114754358 -36029195 + MLT1F LTR MaLR 484 540 -2 1662 164 46 0 chr11 114755762 114756043 -36027510 - AluJo SINE Alu -5 307 14 246 111 56 56 chr11 114756988 114757042 -36026511 - MER53 DNA DNA -3 186 133 395 186 0 0 chr11 114757042 114757112 -36026441 + HsTC2 DNA Tc2 780 849 -1049 648 379 85 5 chr11 114757218 114757643 -36025910 - L2 LINE L2 -3 3310 2852 208 53 53 0 chr11 114757744 114757782 -36025771 + (TA)n Simple_repeat Simple_repeat 1 40 0 37 62 0 0 chr11 114757787 114757852 -36025701 + AT_rich Low_complexity Low_complexity 1 65 0 185 145 21 55 chr11 114757860 114758005 -36025548 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 1393 236 121 34 chr11 114758081 114758611 -36024942 - L1MD2 LINE L1 -41 6318 5743 1809 223 41 11 chr11 114758616 114759078 -36024475 - Charlie1b DNA MER1_type -31 492 17 484 304 143 33 chr11 114759093 114759429 -36024124 - L2 LINE L2 -507 2807 2435 1145 114 17 17 chr11 114760159 114760334 -36023219 - AluSc SINE Alu -3 306 132 2033 111 7 42 chr11 114760334 114760641 -36022912 - AluSq SINE Alu -12 301 6 207 313 0 16 chr11 114761045 114761109 -36022444 + L2 LINE L2 2865 2927 -345 204 340 48 10 chr11 114761272 114761375 -36022178 + L2 LINE L2 3157 3263 -9 1952 138 0 30 chr11 114763480 114763784 -36019769 + AluSx SINE Alu 4 298 -14 363 282 19 146 chr11 114765117 114765330 -36018223 - MIR SINE MIR -46 216 31 339 304 18 9 chr11 114765407 114765519 -36018034 - MIR SINE MIR -26 236 124 273 57 0 0 chr11 114766444 114766479 -36017074 + (CA)n Simple_repeat Simple_repeat 1 35 0 1269 310 149 41 chr11 114766691 114768466 -36015087 + L2 LINE L2 1273 3226 -46 201 284 15 15 chr11 114768700 114768767 -36014786 + GA-rich Low_complexity Low_complexity 4 70 0 335 250 132 37 chr11 114770557 114770693 -36012860 + MIR SINE MIR 102 250 -12 446 280 119 45 chr11 114770765 114771008 -36012545 - MIR SINE MIR 0 262 2 1455 171 0 39 chr11 114771646 114771927 -36011626 - AluJb SINE Alu -8 304 35 420 312 58 7 chr11 114772200 114772338 -36011215 - MIR SINE MIR -77 185 41 1537 184 33 0 chr11 114772503 114772816 -36010737 + AluJb SINE Alu 5 326 0 1311 240 121 22 chr11 114772858 114773313 -36010240 - Zaphod DNA AcHobo -3255 776 277 16693 37 13 1 chr11 114773379 114776201 -36007352 + L1PA4 LINE L1 3266 6126 -29 639 312 14 18 chr11 114776202 114776423 -36007130 + MIR SINE MIR 43 262 0 354 115 0 0 chr11 114776601 114776662 -36006891 + (TA)n Simple_repeat Simple_repeat 1 61 0 5959 151 57 32 chr11 114776708 114777910 -36005643 + Tigger3b DNA MER2_type 1 1231 0 391 226 157 60 chr11 114778155 114778372 -36005181 - MIR SINE MIR -3 259 22 2095 237 102 10 chr11 114779833 114779885 -36003668 + MLT1E1 LTR MaLR 4 50 -604 2011 141 0 3 chr11 114779885 114780183 -36003370 - AluSx SINE Alu -15 297 1 2095 237 102 10 chr11 114780183 114780726 -36002827 + MLT1E1 LTR MaLR 50 654 0 565 224 118 6 chr11 114780850 114781020 -36002533 + MIR SINE MIR 72 260 -2 22 56 0 0 chr11 114781120 114781156 -36002397 + AT_rich Low_complexity Low_complexity 1 36 0 7272 47 5 0 chr11 114781301 114782350 -36001203 + L1PA5 LINE L1 5097 6152 -2 425 320 33 2 chr11 114782372 114782550 -36001003 + MIR SINE MIR 16 197 -65 504 337 50 20 chr11 114782610 114782951 -36000602 + L1MC4a LINE L1 5561 5911 -1897 488 283 121 45 chr11 114782961 114783184 -36000369 + MIR SINE MIR 2 241 -21 32 57 0 0 chr11 114783435 114783488 -36000065 + AT_rich Low_complexity Low_complexity 1 53 0 1608 174 34 13 chr11 114784398 114784696 -35998857 - AluJb SINE Alu -8 304 1 1317 101 14 0 chr11 114785330 114785538 -35998015 - L1PA13 LINE L1 -666 5495 5285 4294 101 17 12 chr11 114785538 114786182 -35997371 + L1PA13 LINE L1 5517 6163 0 263 301 44 64 chr11 114786369 114786572 -35996981 - L2 LINE L2 -23 3290 3092 3787 179 40 18 chr11 114786578 114787982 -35995571 - L1MC1 LINE L1 -503 5830 4404 2348 130 3 0 chr11 114788040 114788408 -35995145 - L1PB1 LINE L1 -1 6150 5782 206 180 11 34 chr11 114788408 114788497 -35995056 + (TA)n Simple_repeat Simple_repeat 1 87 0 3526 156 8 4 chr11 114788557 114789618 -35993935 - L1PB1 LINE L1 -380 5771 4704 5647 190 0 6 chr11 114789624 114789819 -35993734 + L1 LINE L1 3591 3786 -2360 2518 79 41 0 chr11 114789819 114790160 -35993393 + THE1A LTR MaLR 1 355 0 5647 190 0 6 chr11 114790160 114791086 -35992467 + L1 LINE L1 3786 4705 -1441 650 275 0 0 chr11 114791086 114791275 -35992278 - L1MC1 LINE L1 -1773 4373 4185 1516 218 14 29 chr11 114791275 114791619 -35991934 + MLT1A1 LTR MaLR 1 339 -26 438 252 17 8 chr11 114791635 114791754 -35991799 - L1MC1 LINE L1 -1961 4185 4066 182 46 56 139 chr11 114792098 114792206 -35991347 + (TATAA)n Simple_repeat Simple_repeat 1 99 0 32 0 0 0 chr11 114792306 114792338 -35991215 + AT_rich Low_complexity Low_complexity 1 32 0 364 99 70 23 chr11 114792344 114792515 -35991038 + (TA)n Simple_repeat Simple_repeat 2 180 0 441 203 16 33 chr11 114792518 114792751 -35990802 + (TATAA)n Simple_repeat Simple_repeat 1 229 0 221 372 50 22 chr11 114792851 114793031 -35990522 + L2 LINE L2 2456 2640 -674 181 425 16 16 chr11 114793599 114793726 -35989827 + L2 LINE L2 3126 3252 -20 194 264 0 38 chr11 114794150 114794201 -35989352 - L3 LINE CR1 -3 1574 1526 932 236 74 29 chr11 114794201 114794511 -35989042 - MER5C DNA MER1_type 0 324 1 227 322 83 0 chr11 114794571 114794692 -35988861 - MIR SINE MIR -18 244 114 1839 194 34 121 chr11 114794765 114795435 -35988118 + LTR9 LTR ERV1 1 612 0 270 294 114 83 chr11 114796671 114796960 -35986593 - L2 LINE L2 -890 2424 2127 234 361 45 15 chr11 114797026 114797159 -35986394 + L3 LINE CR1 1317 1453 -124 608 268 139 5 chr11 114797950 114798144 -35985409 + MIR SINE MIR 1 220 -42 325 352 56 32 chr11 114799272 114799397 -35984156 - L2 LINE L2 -12 3260 3133 600 260 17 23 chr11 114799983 114800160 -35983393 - MER5B DNA MER1_type -1 177 2 201 74 0 0 chr11 114800454 114800481 -35983072 + (TG)n Simple_repeat Simple_repeat 1 27 0 494 282 92 62 chr11 114801393 114801620 -35981933 + MIR SINE MIR 29 262 0 1987 125 31 0 chr11 114802480 114802768 -35980785 + AluSq SINE Alu 1 297 -16 412 296 129 30 chr11 114803347 114803611 -35979942 + L2 LINE L2 2875 3164 -149 905 161 33 9 chr11 114803616 114803827 -35979726 - HsTC2 DNA Tc2 -3 1895 1680 1273 250 68 18 chr11 114803827 114804211 -35979342 - HsTC2 DNA Tc2 -1492 406 4 239 237 200 67 chr11 114804220 114804355 -35979198 + L2 LINE L2 3159 3311 -2 234 0 0 0 chr11 114804555 114804581 -35978972 + (A)n Simple_repeat Simple_repeat 1 26 0 185 0 40 0 chr11 114804726 114804751 -35978802 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 398 202 45 11 chr11 114805631 114805720 -35977833 - MLT1I LTR MaLR 0 409 318 239 286 13 13 chr11 114805777 114805854 -35977699 - MLT1I LTR MaLR -227 182 106 183 298 0 0 chr11 114806430 114806477 -35977076 - L2 LINE L2 -13 3259 3213 182 250 216 11 chr11 114806536 114806624 -35976929 - MIR SINE MIR -133 129 24 252 270 48 0 chr11 114807321 114807384 -35976169 - L2 LINE L2 0 3313 3248 232 260 0 0 chr11 114807842 114807892 -35975661 + MIR SINE MIR 208 257 -5 285 325 54 48 chr11 114808387 114808553 -35975000 - L2 LINE L2 -896 2418 2252 373 271 107 57 chr11 114809056 114809300 -35974253 + HAL1 LINE L1 2251 2506 -1 409 262 47 0 chr11 114809584 114809691 -35973862 - MIR3 SINE MIR -2 206 95 205 256 0 0 chr11 114809966 114810005 -35973548 - L2 LINE L2 -76 3196 3158 234 0 0 0 chr11 114810405 114810431 -35973122 + (T)n Simple_repeat Simple_repeat 1 26 0 365 299 147 0 chr11 114811184 114811341 -35972212 + MER5A DNA MER1_type 8 187 -2 2022 141 0 0 chr11 114811448 114811738 -35971815 - AluSx SINE Alu -22 290 1 2453 13 3 74 chr11 114812432 114812774 -35970779 + AluYb8 SINE Alu 1 320 0 319 179 54 0 chr11 114813942 114813998 -35969555 + MLT1D LTR MaLR 27 85 -420 418 21 0 0 chr11 114814017 114814064 -35969489 + U6 snRNA snRNA 1 47 -60 582 211 0 134 chr11 114814074 114814268 -35969285 - FAM SINE Alu -12 173 6 420 213 36 147 chr11 114814279 114814629 -35968924 + MLT1D LTR MaLR 95 505 0 266 274 29 10 chr11 114814773 114814875 -35968678 + (CATATA)n Simple_repeat Simple_repeat 4 107 0 444 290 7 13 chr11 114814897 114815052 -35968501 + (TA)n Simple_repeat Simple_repeat 1 154 0 182 174 22 0 chr11 114815093 114815139 -35968414 + (TATATG)n Simple_repeat Simple_repeat 5 51 0 228 298 107 12 chr11 114816341 114816425 -35967128 + L2 LINE L2 3202 3293 -20 1941 111 4 0 chr11 114816941 114817203 -35966350 + AluSq SINE Alu 43 305 -8 428 364 17 11 chr11 114817390 114817566 -35965987 + MIR3 SINE MIR 21 197 -11 322 304 216 10 chr11 114817689 114817893 -35965660 - MIR SINE MIR -12 250 5 1570 200 28 46 chr11 114818377 114818772 -35964781 + MLT1B LTR MaLR 1 388 -2 678 246 17 6 chr11 114819198 114819373 -35964180 - MER69A DNA AcHobo 0 177 1 645 193 24 135 chr11 114819438 114819645 -35963908 - L2 LINE L2 0 3313 3130 21 0 0 0 chr11 114820858 114820879 -35962674 + AT_rich Low_complexity Low_complexity 1 21 0 821 238 62 16 chr11 114821041 114821266 -35962287 + MER33 DNA MER1_type 1 235 -2350 2645 93 11 0 chr11 114821266 114821641 -35961912 - L1PA13 LINE L1 -6 6157 5779 821 238 62 16 chr11 114821641 114821736 -35961817 + MER33 DNA MER1_type 235 324 0 3535 157 12 5 chr11 114821870 114822461 -35961092 - MER6A DNA MER2_type 0 605 271 689 134 155 42 chr11 114822447 114822589 -35960964 - MER6A DNA MER2_type -447 158 1 * 24 32 0 0 chr11 114822862 114822893 -35960660 + AT_rich Low_complexity Low_complexity 1 31 0 1914 203 86 24 chr11 114823154 114823621 -35959932 - MLT1D LTR MaLR -2 503 8 185 164 0 68 chr11 114823806 114823879 -35959674 + CT-rich Low_complexity Low_complexity 2 69 0 22 56 0 0 chr11 114824058 114824094 -35959459 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr11 114825601 114825631 -35957922 + AT_rich Low_complexity Low_complexity 1 30 0 219 282 43 115 chr11 114825692 114825901 -35957652 + L2 LINE L2 2291 2484 -830 181 317 17 0 chr11 114825983 114826043 -35957510 - L2 LINE L2 -8 3264 3204 289 309 84 58 chr11 114826460 114826651 -35956902 - L2 LINE L2 -1043 2271 2076 849 150 0 0 chr11 114827486 114827606 -35955947 + MER58B DNA MER1_type 222 341 0 390 324 136 28 chr11 114827613 114827937 -35955616 - L3 LINE CR1 -841 736 378 1143 114 52 0 chr11 114828655 114828865 -35954688 + L1MA8 LINE L1 6070 6290 -1 732 221 0 13 chr11 114828882 114829060 -35954493 + AluJb SINE Alu 138 313 0 986 171 5 31 chr11 114830394 114830616 -35952937 + L1MA8 LINE L1 6070 6285 -6 318 247 14 14 chr11 114830708 114830781 -35952772 + L2 LINE L2 3006 3078 -194 257 280 70 50 chr11 114831086 114831186 -35952367 + L2 LINE L2 3164 3265 -48 961 48 32 16 chr11 114831225 114831351 -35952202 + AluY SINE Alu 1 128 -183 605 153 16 8 chr11 114831453 114831577 -35951976 + AluY SINE Alu 133 257 -54 2253 89 0 3 chr11 114831642 114831944 -35951609 + AluSg SINE Alu 1 301 -9 941 178 33 54 chr11 114834109 114834350 -35949203 - MER106A DNA MER1_type 0 236 1 270 0 0 0 chr11 114834536 114834566 -35948987 + (TG)n Simple_repeat Simple_repeat 2 31 0 192 40 0 0 chr11 114835042 114835067 -35948486 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 6358 50 21 29 chr11 114835699 114836567 -35946986 + SVA Other Other 526 1386 0 293 258 140 0 chr11 114836617 114836710 -35946843 - MIR SINE MIR -85 177 72 311 325 48 16 chr11 114836903 114837029 -35946524 + MER5A DNA MER1_type 59 188 -1 183 400 27 31 chr11 114837421 114837646 -35945907 + L2 LINE L2 2868 3091 -181 182 347 40 13 chr11 114837851 114837926 -35945627 + L2 LINE L2 3186 3262 -10 182 306 102 20 chr11 114838459 114838557 -35944996 - L2 LINE L2 0 3313 3208 510 297 5 4 chr11 114838823 114839021 -35944532 + L1MA10 LINE L1 5968 6325 -5 467 315 94 43 chr11 114839021 114839466 -35944087 - MLT1J LTR MaLR -43 468 1 308 343 7 35 chr11 114839474 114839617 -35943936 - MIR SINE MIR -13 249 111 204 347 63 0 chr11 114839615 114839710 -35943843 - MER91C DNA MER1_type -24 116 16 * 357 314 41 25 chr11 114839726 114839847 -35943706 - MIR SINE MIR -139 123 1 1139 218 9 0 chr11 114839946 114840166 -35943387 - MER58A DNA MER1_type 0 224 3 254 382 63 63 chr11 114840512 114840939 -35942614 + L2 LINE L2 2846 3272 0 276 308 0 13 chr11 114841168 114841246 -35942307 + L2 LINE L2 2711 2787 -527 801 159 33 60 chr11 114841249 114841431 -35942122 + MER5B DNA MER1_type 1 177 -1 289 291 27 18 chr11 114841511 114841621 -35941932 - L2 LINE L2 -586 2728 2618 231 297 109 20 chr11 114842251 114842352 -35941201 - L2 LINE L2 0 3313 3204 331 284 0 11 chr11 114842384 114842472 -35941081 - L2 LINE L2 0 3313 3227 509 329 38 34 chr11 114843298 114843535 -35940018 - MIR SINE MIR -21 241 4 1965 156 0 0 chr11 114844555 114844856 -35938697 + AluSx SINE Alu 1 301 -11 22 56 0 0 chr11 114844955 114844991 -35938562 + AT_rich Low_complexity Low_complexity 1 36 0 1515 170 6 71 chr11 114846187 114846498 -35937055 + AluJo SINE Alu 1 291 -21 180 0 0 0 chr11 114846502 114846522 -35937031 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 28 48 0 0 chr11 114846967 114847009 -35936544 + AT_rich Low_complexity Low_complexity 1 42 0 240 274 71 0 chr11 114847982 114848066 -35935487 - L2 LINE L2 0 3272 3183 1135 309 32 11 chr11 114848958 114849330 -35934223 - LTR16C LTR ERVL 0 491 112 609 319 64 8 chr11 114849442 114849677 -35933876 + MIR SINE MIR 2 249 -13 309 304 74 40 chr11 114849692 114849840 -35933713 - L2 LINE L2 0 3313 3161 237 33 0 0 chr11 114849934 114849964 -35933589 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 26 50 0 0 chr11 114850273 114850313 -35933240 + AT_rich Low_complexity Low_complexity 1 40 0 6463 145 10 4 chr11 114850313 114852010 -35931543 - L1MA2 LINE L1 0 6304 4598 1630 134 13 23 chr11 114852110 114852417 -35931136 - L1MA2 LINE L1 -1536 4610 4307 1816 114 0 0 chr11 114852418 114852681 -35930872 - L1PA6 LINE L1 -7 6147 5885 5233 68 1 4 chr11 114852684 114853401 -35930152 + L1P LINE L1 2835 3549 -2597 27 0 0 0 chr11 114853501 114853528 -35930025 + AT_rich Low_complexity Low_complexity 1 27 0 318 319 84 0 chr11 114855444 114855563 -35927990 + MIR SINE MIR 56 184 -78 374 222 167 56 chr11 114855908 114856106 -35927447 - MER112 DNA MER1_type -40 220 1 384 249 163 57 chr11 114856170 114856379 -35927174 - L2 LINE L2 0 3313 3083 22 56 0 0 chr11 114856569 114856605 -35926948 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr11 114856876 114856898 -35926655 + AT_rich Low_complexity Low_complexity 1 22 0 285 317 96 30 chr11 114857581 114857748 -35925805 + MIR3 SINE MIR 18 195 -13 258 32 0 0 chr11 114860025 114860056 -35923497 + (TG)n Simple_repeat Simple_repeat 1 31 0 321 345 61 82 chr11 114860672 114861112 -35922441 + L3 LINE CR1 1146 1576 -1 203 208 0 19 chr11 114861882 114861935 -35921618 + (TA)n Simple_repeat Simple_repeat 1 52 0 252 0 0 0 chr11 114861936 114861964 -35921589 + (TG)n Simple_repeat Simple_repeat 2 29 0 432 220 50 14 chr11 114863174 114863315 -35920238 - MER103 DNA DNA -11 155 10 508 265 0 7 chr11 114863549 114863685 -35919868 + HsTC2 DNA Tc2 1 135 -1763 * 1022 231 58 36 chr11 114863682 114863941 -35919612 + HsTC2 DNA Tc2 1249 1501 -397 2458 108 19 11 chr11 114863941 114864302 -35919251 - THE1B LTR MaLR 0 364 1 1022 231 58 36 chr11 114864302 114864401 -35919152 + HsTC2 DNA Tc2 1501 1791 -107 2237 103 7 0 chr11 114865601 114865902 -35917651 + AluSx SINE Alu 1 303 -9 219 230 126 0 chr11 114866570 114866657 -35916896 + MIR SINE MIR 124 221 -41 965 86 0 23 chr11 114866700 114866828 -35916725 - AluSp/q SINE Alu -20 293 169 2071 276 146 22 chr11 114866989 114868161 -35915392 - L2 LINE L2 0 3313 1997 338 265 148 56 chr11 114868360 114868522 -35915031 + MER5A DNA MER1_type 7 183 -6 280 233 256 0 chr11 114869341 114869427 -35914126 - MIR SINE MIR -67 195 88 420 326 129 11 chr11 114870270 114870448 -35913105 + MIR3 SINE MIR 1 199 -9 308 309 20 7 chr11 114870652 114870804 -35912749 - L1ME4a LINE L1 -3 6118 5965 675 276 90 40 chr11 114870835 114871314 -35912239 - L1ME4a LINE L1 -224 5897 5395 778 296 93 74 chr11 114871359 114871856 -35911697 + L2 LINE L2 2804 3309 -4 23 0 0 0 chr11 114872303 114872326 -35911227 + AT_rich Low_complexity Low_complexity 1 23 0 387 275 92 0 chr11 114872621 114872752 -35910801 - MIR SINE MIR -54 208 66 198 338 211 0 chr11 114872794 114872936 -35910617 - MIR SINE MIR -16 246 75 892 220 0 0 chr11 114873380 114873557 -35909996 + L1MC1 LINE L1 6157 6333 0 399 253 82 66 chr11 114874109 114874302 -35909251 - MLT1J1 LTR MaLR -252 194 1 343 308 66 44 chr11 114874629 114874811 -35908742 + MIR SINE MIR 6 191 -71 350 345 14 22 chr11 114874842 114874981 -35908572 + MIR SINE MIR 20 157 -105 499 317 30 82 chr11 114875035 114875298 -35908255 - L2 LINE L2 -1 3312 3076 1532 169 52 60 chr11 114875298 114875666 -35907887 + MLT1A1 LTR MaLR 1 365 0 499 317 30 82 chr11 114875666 114875803 -35907750 - L2 LINE L2 -237 3076 2933 346 344 67 27 chr11 114875843 114876067 -35907486 - L2 LINE L2 -660 2654 2422 23 0 0 0 chr11 114877590 114877613 -35905940 + AT_rich Low_complexity Low_complexity 1 23 0 266 252 24 65 chr11 114878298 114878421 -35905132 + MLT1A1 LTR MaLR 77 194 -171 538 101 0 34 chr11 114878447 114878536 -35905017 - MSTC LTR MaLR -342 86 1 215 369 45 9 chr11 114880042 114880153 -35903400 + MIR SINE MIR 28 142 -120 947 126 0 6 chr11 114880516 114880690 -35902863 + (GAAA)n Simple_repeat Simple_repeat 3 175 0 651 199 0 57 chr11 114881957 114882098 -35901455 - FLAM_C SINE Alu 0 133 1 297 319 115 11 chr11 114882561 114882752 -35900801 + L2 LINE L2 2736 2946 -368 805 269 59 1 chr11 114882993 114883206 -35900347 + MIR SINE MIR 37 262 0 247 389 34 0 chr11 114883401 114883550 -35900003 + MIR3 SINE MIR 49 202 -6 314 316 50 22 chr11 114883782 114883921 -35899632 - MIR SINE MIR 0 262 120 4201 80 30 65 chr11 114883926 114884600 -35898953 + SVA Other Other 219 868 -518 839 173 0 60 chr11 114934882 114935050 -35848503 - MER39B LTR ERV1 -495 158 1 1724 288 54 8 chr11 114935099 114935707 -35847846 + MER20B DNA MER1_type 116 751 -32 195 131 48 24 chr11 114935707 114935791 -35847762 + (TA)n Simple_repeat Simple_repeat 1 86 0 318 294 117 52 chr11 114936347 114936578 -35846975 - MIR SINE MIR -6 256 11 1907 197 82 60 chr11 114936888 114937437 -35846116 - L1MC3 LINE L1 -67 7718 7158 637 325 67 80 chr11 114937695 114938157 -35845396 + HAL1 LINE L1 352 807 -1700 376 267 62 51 chr11 114938215 114938391 -35845162 + HAL1 LINE L1 970 1147 -1360 204 179 0 0 chr11 114938391 114938430 -35845123 + (TA)n Simple_repeat Simple_repeat 1 39 0 232 111 0 0 chr11 114938434 114938479 -35845074 - LTR66 LTR ERVL -171 439 395 21 309 0 0 chr11 114938638 114938693 -35844860 + GC_rich Low_complexity Low_complexity 1 55 0 274 219 32 16 chr11 114938693 114938816 -35844737 + (CGGGG)n Simple_repeat Simple_repeat 1 125 0 270 183 28 14 chr11 114939126 114939197 -35844356 + L1M4 LINE L1 2875 2946 -3200 27 73 0 0 chr11 114939197 114939252 -35844301 + AT_rich Low_complexity Low_complexity 1 55 0 2201 240 39 42 chr11 114939287 114940105 -35843448 - L1ME1 LINE L1 -9 6155 5316 1855 153 59 3 chr11 114940147 114940501 -35843052 - L1MC1 LINE L1 0 6333 5960 3668 165 14 15 chr11 114940519 114941251 -35842302 - L1MA7 LINE L1 -6 6285 5555 822 243 27 23 chr11 114941270 114941533 -35842020 - L1ME1 LINE L1 -1411 4735 4472 616 282 56 0 chr11 114941540 114941756 -35841797 - L1ME1 LINE L1 -1955 4191 3964 256 367 20 10 chr11 114942652 114942750 -35840803 + MIR SINE MIR 47 145 -117 272 230 74 22 chr11 114943076 114943211 -35840342 - L1ME4a LINE L1 -24 6097 5956 2843 161 38 35 chr11 114943608 114944217 -35839336 - LTR36 LTR ERV1 0 611 1 227 240 0 0 chr11 114944942 114944992 -35838561 - MIR3 SINE MIR -11 197 148 4288 120 5 2 chr11 114945012 114945645 -35837908 - MER41B LTR ERV1 0 635 1 327 303 10 0 chr11 114946824 114946923 -35836630 + MIR SINE MIR 146 245 -17 188 261 283 0 chr11 114947641 114947733 -35835820 - L2 LINE L2 -16 3297 3180 284 347 0 0 chr11 114948023 114948095 -35835458 + MLT1K LTR MaLR 70 141 -447 250 173 0 19 chr11 114948112 114948164 -35835389 - MLT1A1 LTR MaLR -311 54 4 211 228 18 0 chr11 114948983 114949040 -35834513 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 21 36 0 0 chr11 114949742 114949770 -35833783 + AT_rich Low_complexity Low_complexity 1 28 0 297 0 0 0 chr11 114950508 114950541 -35833012 + (A)n Simple_repeat Simple_repeat 1 33 0 510 46 0 0 chr11 114950541 114950606 -35832947 + (T)n Simple_repeat Simple_repeat 1 65 0 195 100 0 0 chr11 114951410 114951440 -35832113 + (A)n Simple_repeat Simple_repeat 1 30 0 560 135 11 0 chr11 114951931 114952020 -35831533 - LTR12 LTR ERV1 0 714 625 334 166 45 72 chr11 114952020 114952131 -35831422 - LTR30 LTR ERV1 -92 612 377 529 191 176 45 chr11 114952131 114952330 -35831223 - LTR12 LTR ERV1 -437 277 53 253 235 0 0 chr11 114952331 114952382 -35831171 - LTR30 LTR ERV1 -671 51 1 315 228 139 10 chr11 114952477 114952578 -35830975 + MIR SINE MIR 28 141 -121 231 36 0 0 chr11 114952579 114952607 -35830946 + (TG)n Simple_repeat Simple_repeat 1 28 0 24 32 0 0 chr11 114952607 114952638 -35830915 + AT_rich Low_complexity Low_complexity 1 31 0 688 271 67 59 chr11 114952892 114953546 -35830007 + L1MEd LINE L1 1033 1620 -4910 490 329 61 65 chr11 114953650 114954248 -35829305 + L1MEd LINE L1 1809 2462 -4259 217 156 16 78 chr11 114954295 114954359 -35829194 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 239 133 22 0 chr11 114954374 114954419 -35829134 + (CATA)n Simple_repeat Simple_repeat 3 48 0 313 233 78 0 chr11 114954949 114955039 -35828514 + L1MEd LINE L1 3127 3223 -3317 357 176 8 160 chr11 114955055 114955180 -35828373 + MER21B LTR ERV1 1 106 -757 284 256 0 26 chr11 114955177 114955255 -35828298 + MER77 LTR ERV1 61 136 -469 * 2432 240 95 17 chr11 114955266 114955917 -35827636 + MER21B LTR ERV1 123 824 -39 300 276 17 23 chr11 114955961 114956135 -35827418 + L1MEd LINE L1 3238 3410 -3130 1193 182 93 4 chr11 114956199 114956457 -35827096 - L1MB5 LINE L1 -8 6166 5886 21 0 0 0 chr11 114956457 114956478 -35827075 + AT_rich Low_complexity Low_complexity 1 21 0 329 346 24 19 chr11 114956787 114956995 -35826558 + L1ME LINE L1 5534 5742 -428 1650 248 50 55 chr11 114957159 114957817 -35825736 - L1M4 LINE L1 -2135 4011 3357 951 232 90 7 chr11 114957820 114958180 -35825373 - L1 LINE L1 -840 5306 4906 599 356 43 40 chr11 114958572 114958968 -35824585 - L1MEc LINE L1 -5963 433 37 300 275 55 16 chr11 114960188 114960338 -35823215 + MIR SINE MIR 1 156 -57 25 31 0 0 chr11 114960422 114960454 -35823099 + AT_rich Low_complexity Low_complexity 1 32 0 200 213 0 21 chr11 114960525 114960572 -35822981 + GA-rich Low_complexity Low_complexity 3 48 0 318 386 59 47 chr11 114960713 114961415 -35822138 - L2 LINE L2 -4 3268 2562 453 301 86 18 chr11 114961648 114961811 -35821742 + MER5B DNA MER1_type 2 175 -3 200 169 17 34 chr11 114961840 114961899 -35821654 + L2 LINE L2 3175 3232 -81 1805 209 79 46 chr11 114963350 114963927 -35819626 - MLT1E1 LTR MaLR -5 649 5 24 0 0 0 chr11 114963984 114964008 -35819545 + AT_rich Low_complexity Low_complexity 1 24 0 32 43 0 0 chr11 114964059 114964105 -35819448 + AT_rich Low_complexity Low_complexity 1 46 0 486 33 0 0 chr11 114964176 114964237 -35819316 - L1PA6 LINE L1 -5 6149 6089 833 317 103 24 chr11 114964974 114965548 -35818005 - MLT1G LTR MaLR 0 590 1 230 337 10 31 chr11 114965812 114965910 -35817643 - L2 LINE L2 -992 2322 2227 387 312 129 0 chr11 114966259 114966429 -35817124 + MIR SINE MIR 58 249 -13 724 214 117 24 chr11 114967504 114967845 -35815708 - MER69 DNA AcHobo -112 2414 2042 1230 302 67 7 chr11 114967848 114968278 -35815275 - MER69 DNA AcHobo -2070 456 1 284 309 0 0 chr11 114968858 114968942 -35814611 - MER117 DNA MER1_type -31 166 83 1020 84 0 22 chr11 114969333 114969511 -35814042 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 1307 208 19 15 chr11 114969523 114969714 -35813839 + MER82 DNA MER2_type 11 205 -448 201 74 0 0 chr11 114969714 114969741 -35813812 + (TA)n Simple_repeat Simple_repeat 2 28 0 1307 208 19 15 chr11 114969741 114969814 -35813739 + MER82 DNA MER2_type 205 276 -377 180 0 0 0 chr11 114969816 114969836 -35813717 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 1956 118 17 14 chr11 114969839 114970127 -35813426 - AluSx SINE Alu -23 289 1 1991 136 4 0 chr11 114970138 114970439 -35813114 - AluSx SINE Alu 0 302 1 213 304 38 25 chr11 114970614 114970693 -35812860 - MIR SINE MIR -26 236 157 213 359 94 23 chr11 114971977 114972105 -35811448 + MIR3 SINE MIR 13 149 -59 228 314 67 19 chr11 114972253 114972358 -35811195 - MIR SINE MIR -64 198 89 4601 65 8 0 chr11 114972388 114972983 -35810570 - L1PA7 LINE L1 -4 6150 5551 399 238 0 0 chr11 114973292 114973393 -35810160 - L1MA4 LINE L1 -3 6297 6197 1824 209 20 85 chr11 114973595 114974135 -35809418 - MLT1D LTR MaLR 0 505 1 1785 182 55 0 chr11 114974138 114974468 -35809085 + MER7A DNA MER2_type 1 346 0 23 0 0 0 chr11 114975039 114975062 -35808491 + AT_rich Low_complexity Low_complexity 1 23 0 1961 117 0 0 chr11 114975605 114975871 -35807682 + AluSq SINE Alu 39 304 -9 228 100 0 0 chr11 114976091 114976131 -35807422 + (TTAG)n Simple_repeat Simple_repeat 1 40 0 2107 94 7 0 chr11 114976131 114976408 -35807145 - AluSx SINE Alu -33 279 1 552 313 20 10 chr11 114976558 114976759 -35806794 + MIR SINE MIR 8 210 -52 232 330 11 11 chr11 114976975 114977063 -35806490 + L2 LINE L2 2799 2886 -428 225 340 75 71 chr11 114977334 114977616 -35805937 + L2 LINE L2 2896 3178 -94 248 275 14 14 chr11 114978362 114978431 -35805122 + CT-rich Low_complexity Low_complexity 6 74 0 21 0 0 0 chr11 114979371 114979392 -35804161 + AT_rich Low_complexity Low_complexity 1 21 0 190 269 172 21 chr11 114979437 114979530 -35804023 + MIR SINE MIR 45 151 -111 257 159 0 43 chr11 114980359 114980428 -35803125 + CT-rich Low_complexity Low_complexity 3 68 0 1046 248 124 31 chr11 114981315 114981735 -35801818 + MLT1C LTR MaLR 9 467 0 236 203 40 0 chr11 114981908 114981982 -35801571 + L1M4 LINE L1 4339 4415 -1731 2054 241 41 61 chr11 114982050 114982266 -35801287 + L1ME LINE L1 2151 2370 -3776 3454 87 11 0 chr11 114982266 114982714 -35800839 + MLT2A2 LTR ERVL 1 453 0 2054 241 41 61 chr11 114982714 114983082 -35800471 + L1ME LINE L1 2370 2715 -3431 2793 10 0 7 chr11 114983082 114983392 -35800161 + AluYa5 SINE Alu 1 308 -3 2054 241 41 61 chr11 114983392 114983679 -35799874 + L1ME LINE L1 2715 3006 -3140 2382 252 69 30 chr11 114983834 114985207 -35798346 + L1ME LINE L1 4408 5818 -348 2724 260 54 14 chr11 114985260 114986191 -35797362 + L1MC4a LINE L1 6829 7796 -12 3008 117 29 8 chr11 114986637 114987124 -35796429 + L1PA14 LINE L1 5664 6160 -1 1959 125 3 29 chr11 114989131 114989444 -35794109 - AluSx SINE Alu -7 305 1 770 249 15 34 chr11 114990505 114990710 -35792843 + MIR SINE MIR 58 258 -4 1768 257 38 63 chr11 114990719 114991332 -35792221 - MLT1E2 LTR MaLR 0 626 1 23 0 0 0 chr11 114992003 114992026 -35791527 + AT_rich Low_complexity Low_complexity 1 23 0 328 333 207 5 chr11 114992042 114992240 -35791313 - MIR SINE MIR -24 238 1 440 253 22 131 chr11 114993238 114993467 -35790086 - L2 LINE L2 -6 3307 3104 785 285 64 0 chr11 114993516 114993751 -35789802 + MIR SINE MIR 13 262 0 323 287 95 33 chr11 114993773 114994025 -35789528 - L2 LINE L2 -284 3029 2757 196 214 0 0 chr11 114994207 114994249 -35789304 - L2 LINE L2 -77 3236 3195 21 0 0 0 chr11 114994249 114994270 -35789283 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 114994521 114994543 -35789010 + AT_rich Low_complexity Low_complexity 1 22 0 38 39 0 0 chr11 114994942 114994994 -35788559 + AT_rich Low_complexity Low_complexity 1 52 0 24 0 0 0 chr11 114995411 114995435 -35788118 + AT_rich Low_complexity Low_complexity 1 24 0 276 77 0 0 chr11 114996098 114996137 -35787416 + (TC)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chr11 114996859 114996880 -35786673 + AT_rich Low_complexity Low_complexity 1 21 0 488 214 43 17 chr11 114997908 114998025 -35785528 - L2 LINE L2 -10 3303 3184 578 215 109 25 chr11 114998026 114998173 -35785380 + MLT1F1 LTR MaLR 2 161 -394 6006 106 14 0 chr11 114998173 114999346 -35784207 + L1PA14 LINE L1 4975 6160 -1 578 215 109 25 chr11 114999346 114999366 -35784187 + MLT1F1 LTR MaLR 161 178 -377 984 217 240 3 chr11 114999492 114999796 -35783757 + MLT1F1 LTR MaLR 184 559 -8 1912 304 227 30 chr11 114999861 115001797 -35781756 - L2 LINE L2 -178 3135 832 227 224 52 0 chr11 115003829 115003887 -35779666 - MIR SINE MIR -18 244 184 264 359 66 0 chr11 115003899 115004005 -35779548 + L2 LINE L2 3151 3263 -9 240 35 0 0 chr11 115004721 115004750 -35778803 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 614 122 0 0 chr11 115005011 115005141 -35778412 - Alu SINE Alu 0 320 191 369 167 30 0 chr11 115006290 115006356 -35777197 - AluJo SINE Alu -3 299 232 1165 162 0 31 chr11 115006357 115006548 -35777005 - AluJo SINE Alu -127 185 1 2215 107 3 0 chr11 115006956 115007246 -35776307 + AluSx SINE Alu 1 291 -21 484 305 17 11 chr11 115007309 115007483 -35776070 + MER69 DNA AcHobo 176 350 -876 687 286 44 26 chr11 115007491 115007525 -35776028 + L1MEc LINE L1 36 68 -6328 1769 128 71 49 chr11 115007525 115007892 -35775661 - THE1C LTR MaLR 0 375 1 687 286 44 26 chr11 115007892 115008130 -35775423 + L1MEc LINE L1 68 313 -6083 1713 245 81 46 chr11 115008141 115008770 -35774783 + L1MEc LINE L1 358 1008 -5388 300 279 122 20 chr11 115008788 115008985 -35774568 + L1MEc LINE L1 1113 1329 -5067 375 261 36 9 chr11 115009160 115009271 -35774282 + MER69 DNA AcHobo 487 600 -1926 802 219 37 49 chr11 115009293 115009539 -35774014 + L1MEc LINE L1 1571 1813 -4583 990 319 58 9 chr11 115009577 115010010 -35773543 + MER69 DNA AcHobo 413 866 -1660 732 254 31 5 chr11 115010161 115010354 -35773199 + MER69 DNA AcHobo 873 1070 -1456 951 192 158 26 chr11 115010391 115010740 -35772813 + MER69 DNA AcHobo 2124 2518 -8 2212 110 0 28 chr11 115012302 115012620 -35770933 + AluY SINE Alu 1 309 -2 4493 82 89 124 chr11 115012789 115013645 -35769908 + LTR12 LTR ERV1 1 826 0 249 287 11 58 chr11 115015386 115015473 -35768080 + L2 LINE L2 3186 3268 -4 1775 190 0 0 chr11 115018513 115018802 -35764751 - AluJo SINE Alu -23 289 1 24 0 0 0 chr11 115019334 115019358 -35764195 + AT_rich Low_complexity Low_complexity 1 24 0 217 282 68 29 chr11 115019612 115019715 -35763838 + L2 LINE L2 2648 2754 -560 365 261 134 8 chr11 115019877 115019996 -35763557 + L2 LINE L2 3139 3272 0 413 269 0 10 chr11 115020676 115020780 -35762773 - MER5A DNA MER1_type -83 106 4 1640 196 19 56 chr11 115020914 115021291 -35762262 + MLT1A1 LTR MaLR 3 365 0 2263 122 27 8 chr11 115021320 115021688 -35761865 + THE1C LTR MaLR 1 375 0 310 324 126 22 chr11 115022404 115022586 -35760967 + MIR3 SINE MIR 4 204 -4 1080 281 58 73 chr11 115023282 115023856 -35759697 - L2 LINE L2 -2590 724 160 195 353 90 0 chr11 115023863 115023996 -35759557 - L2 LINE L2 -1433 1881 1737 416 270 24 24 chr11 115024204 115024330 -35759223 - MIR SINE MIR -39 223 98 247 339 73 17 chr11 115024592 115024825 -35758728 + MARNA DNA Mariner 328 573 -13 21 36 0 0 chr11 115025524 115025552 -35758001 + AT_rich Low_complexity Low_complexity 1 28 0 1872 164 49 0 chr11 115025563 115025892 -35757661 + MER7A DNA MER2_type 4 346 0 1343 202 4 37 chr11 115026593 115026865 -35756688 + AluJo SINE Alu 1 263 -49 400 263 80 51 chr11 115026876 115027113 -35756440 - L1M4b LINE L1 -3926 3031 2789 317 253 95 119 chr11 115027185 115027438 -35756115 - L1M4b LINE L1 -4419 2719 2473 289 105 0 0 chr11 115027575 115027613 -35755940 + tRNA-Arg-AGA tRNA tRNA 1 38 -38 2362 235 32 76 chr11 115027780 115028624 -35754929 - L1M4b LINE L1 -4543 2416 1635 1948 111 44 0 chr11 115028624 115028894 -35754659 - AluSx SINE Alu -30 282 1 2362 235 32 76 chr11 115028894 115029296 -35754257 - L1M4b LINE L1 -5324 1635 1217 309 26 0 0 chr11 115029390 115029428 -35754125 + (TG)n Simple_repeat Simple_repeat 2 39 0 1069 277 45 27 chr11 115029685 115030088 -35753465 - L1M4b LINE L1 -5635 1224 590 351 263 142 24 chr11 115030625 115030810 -35752743 + MIR SINE MIR 3 208 -54 336 377 25 0 chr11 115031373 115031495 -35752058 + L2 LINE L2 3148 3272 0 476 238 19 6 chr11 115031638 115031772 -35751781 + L1PA8A LINE L1 5685 5816 -315 26 0 0 0 chr11 115031847 115031873 -35751680 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 115032701 115032723 -35750830 + AT_rich Low_complexity Low_complexity 1 22 0 570 310 25 58 chr11 115032875 115033117 -35750436 + MIR SINE MIR 9 242 -20 2184 319 50 64 chr11 115033459 115034426 -35749127 + L1MD1 LINE L1 5279 6231 -11 268 254 38 55 chr11 115034427 115034680 -35748873 + L1MEc LINE L1 2133 2350 -3865 669 311 73 21 chr11 115034693 115035374 -35748179 - L1MEc LINE L1 -4654 2468 1752 186 71 0 0 chr11 115035376 115035404 -35748149 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1584 300 71 14 chr11 115035404 115036027 -35747526 - L1MEc LINE L1 -4895 1528 871 23 0 0 0 chr11 115036055 115036078 -35747475 + AT_rich Low_complexity Low_complexity 1 23 0 972 202 88 4 chr11 115036425 115036687 -35746866 - L1MEc LINE L1 -6120 303 20 186 43 0 0 chr11 115037238 115037261 -35746292 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 223 330 55 0 chr11 115037275 115037366 -35746187 + MIR SINE MIR 67 162 -100 356 326 158 5 chr11 115038150 115038346 -35745207 + MIR SINE MIR 25 250 -12 4393 136 59 49 chr11 115039339 115040156 -35743397 - LTR12 LTR ERV1 -1 825 1 502 241 35 44 chr11 115040190 115040506 -35743047 - pTR5 LTR ERV1 -1383 1055 743 212 213 64 0 chr11 115040966 115041013 -35742540 - L2 LINE L2 -4 3268 3219 246 298 93 40 chr11 115041930 115042081 -35741472 + MIR3 SINE MIR 26 184 -24 1689 206 3 24 chr11 115042617 115042986 -35740567 + MLT1A1 LTR MaLR 1 361 -4 2999 209 37 5 chr11 115043337 115043936 -35739617 + MER82 DNA MER2_type 36 653 0 621 0 0 0 chr11 115044114 115044183 -35739370 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 1657 178 45 53 chr11 115044192 115044568 -35738985 + THE1C LTR MaLR 2 374 -1 289 253 0 33 chr11 115044703 115044794 -35738759 - L1MC/D LINE L1 -2043 5765 5678 1761 164 11 4 chr11 115045905 115046186 -35737367 + AluSx SINE Alu 1 283 -29 195 42 0 0 chr11 115046186 115046210 -35737343 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 355 318 110 80 chr11 115046312 115046772 -35736781 + HAL1b LINE L1 38 518 -830 1655 179 7 14 chr11 115046772 115047062 -35736491 - AluJb SINE Alu -21 291 4 355 318 110 80 chr11 115047062 115047148 -35736405 + HAL1b LINE L1 518 600 -748 671 254 0 0 chr11 115047299 115047437 -35736116 - MER63A DNA MER1_type -29 181 44 1138 175 72 110 chr11 115047473 115047884 -35735669 - MLT1B LTR MaLR 0 396 1 424 227 23 64 chr11 115047895 115048037 -35735516 + L1MC5 LINE L1 6656 6814 -971 666 143 29 21 chr11 115048101 115048241 -35735312 + L1MC5 LINE L1 7307 7447 -514 284 315 65 9 chr11 115050084 115050192 -35733361 - MIR3 SINE MIR -30 178 65 237 65 0 0 chr11 115050193 115050224 -35733329 + (A)n Simple_repeat Simple_repeat 1 31 0 23 54 0 0 chr11 115050269 115050306 -35733247 + AT_rich Low_complexity Low_complexity 1 37 0 221 291 55 55 chr11 115050610 115050720 -35732833 + MIR SINE MIR 79 188 -74 2438 70 7 0 chr11 115051066 115051368 -35732185 - AluY SINE Alu -7 304 1 248 340 80 0 chr11 115053441 115053541 -35730012 + HAL1 LINE L1 11 118 -2389 487 229 8 0 chr11 115053560 115053682 -35729871 - L1MC3 LINE L1 -2 7783 7661 1292 263 74 28 chr11 115053783 115054282 -35729271 + HAL1 LINE L1 1189 1710 -797 30 0 0 0 chr11 115055437 115055467 -35728086 + AT_rich Low_complexity Low_complexity 1 30 0 775 211 278 4 chr11 115055476 115055746 -35727807 - MER2 DNA MER2_type 0 344 1 968 265 21 13 chr11 115057081 115057315 -35726238 + MIR SINE MIR 6 241 -21 1001 249 78 46 chr11 115057341 115057746 -35725807 - HAL1b LINE L1 -8 1340 915 2416 59 3 0 chr11 115057746 115058052 -35725501 - AluY SINE Alu -4 307 1 1001 249 78 46 chr11 115058052 115058143 -35725410 - HAL1b LINE L1 -433 915 828 31 0 0 0 chr11 115058612 115058643 -35724910 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr11 115059399 115059434 -35724119 + AT_rich Low_complexity Low_complexity 1 35 0 207 309 103 15 chr11 115059885 115059953 -35723600 + MIR SINE MIR 38 111 -151 701 336 43 0 chr11 115060328 115060563 -35722990 + MIR SINE MIR 8 252 -10 913 308 12 4 chr11 115060854 115061104 -35722449 + MIR SINE MIR 9 260 -2 553 192 17 17 chr11 115061880 115062057 -35721496 + CT-rich Low_complexity Low_complexity 1 177 0 266 293 61 37 chr11 115062141 115062223 -35721330 + L2 LINE L2 3230 3313 0 230 363 44 16 chr11 115062255 115062437 -35721116 - MIR SINE MIR -5 257 71 186 103 0 0 chr11 115062598 115062627 -35720926 + (TG)n Simple_repeat Simple_repeat 2 30 0 199 238 10 109 chr11 115063828 115063929 -35719624 + L2 LINE L2 3176 3266 -6 1965 164 33 3 chr11 115064600 115064965 -35718588 + MSTA LTR MaLR 1 376 -52 1154 142 0 11 chr11 115065492 115065675 -35717878 + AluY SINE Alu 131 311 0 2172 72 0 24 chr11 115065866 115066195 -35717358 - AluY SINE Alu 0 322 1 652 307 53 9 chr11 115068890 115069118 -35714435 - MIR SINE MIR -4 258 21 21 0 0 0 chr11 115069369 115069390 -35714163 + AT_rich Low_complexity Low_complexity 1 21 0 2396 200 29 70 chr11 115069960 115070088 -35713465 - MER39 LTR ERV1 -1 706 574 4940 73 158 0 chr11 115070088 115070801 -35712752 - LTR12 LTR ERV1 0 826 1 2396 200 29 70 chr11 115070801 115070856 -35712697 - MER39 LTR ERV1 -133 574 518 3100 151 34 9 chr11 115070856 115071418 -35712135 + LTR24B LTR ERV1 1 576 0 2396 200 29 70 chr11 115071418 115071709 -35711844 - MER39 LTR ERV1 -189 518 263 2232 91 3 10 chr11 115071709 115072018 -35711535 + AluSq SINE Alu 1 307 -6 2396 200 29 70 chr11 115072018 115072200 -35711353 - MER39 LTR ERV1 -444 263 75 262 328 39 4 chr11 115072279 115072511 -35711042 + MER20B DNA MER1_type 115 354 -429 14238 144 17 26 chr11 115072640 115072826 -35710727 - Tigger1 DNA MER2_type -1 2417 2231 1182 204 25 13 chr11 115072826 115073061 -35710492 - MER8 DNA MER2_type 0 239 2 14238 144 17 26 chr11 115073061 115075311 -35708242 - Tigger1 DNA MER2_type -187 2231 2 1548 152 0 57 chr11 115075469 115075765 -35707788 - AluJb SINE Alu -25 287 9 259 300 78 17 chr11 115076022 115076202 -35707351 - Charlie7 DNA MER1_type -2398 214 24 308 356 0 20 chr11 115076366 115076467 -35707086 - L2 LINE L2 -72 3200 3102 274 212 25 102 chr11 115076460 115076578 -35706975 - MIR SINE MIR -34 228 120 * 1204 208 4 34 chr11 115077964 115078228 -35705325 - AluJb SINE Alu -26 286 31 6602 120 123 114 chr11 115078231 115079913 -35703640 - pTR5 LTR ERV1 0 2438 743 189 337 33 22 chr11 115079978 115080070 -35703483 - MIR SINE MIR -68 140 48 1801 225 0 8 chr11 115080784 115081149 -35702404 + MLT1A1 LTR MaLR 1 362 -3 22 35 0 0 chr11 115081312 115081341 -35702212 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr11 115081766 115081789 -35701764 + AT_rich Low_complexity Low_complexity 1 23 0 357 164 0 0 chr11 115081841 115081914 -35701639 + (TG)n Simple_repeat Simple_repeat 2 74 0 263 278 185 0 chr11 115082128 115082236 -35701317 - LTR50 LTR ERVL -636 159 32 200 323 32 0 chr11 115083072 115083134 -35700419 - MIR SINE MIR -113 149 86 517 256 24 0 chr11 115083263 115083388 -35700165 - MER94 DNA DNA -6 128 1 414 355 114 32 chr11 115083388 115083729 -35699824 + L3 LINE CR1 1013 1381 -196 417 276 4 114 chr11 115083761 115083921 -35699632 - L1M4 LINE L1 -1886 4260 4137 625 204 0 0 chr11 115083921 115084034 -35699519 + FLAM_A SINE Alu 4 116 -17 417 276 4 114 chr11 115084034 115084127 -35699426 - L1M4 LINE L1 -2009 4137 4035 355 285 82 97 chr11 115084255 115085188 -35698365 - L1M4 LINE L1 -2331 3815 2869 300 53 0 0 chr11 115085188 115085226 -35698327 + (TG)n Simple_repeat Simple_repeat 1 38 0 2395 81 0 0 chr11 115085229 115085536 -35698017 - AluSc SINE Alu -2 307 1 355 285 82 97 chr11 115085536 115085596 -35697957 - L1M4 LINE L1 -3279 2867 2813 27 73 0 0 chr11 115085597 115085652 -35697901 + AT_rich Low_complexity Low_complexity 1 55 0 445 227 35 21 chr11 115086181 115086322 -35697231 - L1ME2 LINE L1 -4 6160 6018 4414 130 51 13 chr11 115086606 115086964 -35696589 - L1PB1 LINE L1 -5 6146 5803 597 91 0 27 chr11 115086964 115087074 -35696479 + (TA)n Simple_repeat Simple_repeat 2 108 0 4414 130 51 13 chr11 115087074 115087478 -35696075 - L1PB1 LINE L1 -348 5803 5355 1958 254 44 34 chr11 115087478 115088290 -35695263 - L1ME2 LINE L1 -196 5970 5147 303 122 0 0 chr11 115089005 115089054 -35694499 + (TG)n Simple_repeat Simple_repeat 1 49 0 1229 190 44 58 chr11 115089461 115089756 -35693797 + AluJo SINE Alu 14 304 -8 285 162 29 29 chr11 115090031 115090099 -35693454 + MER5B DNA MER1_type 1 68 -110 488 261 23 0 chr11 115092397 115092527 -35691026 + MIR SINE MIR 130 262 0 4715 24 0 0 chr11 115094174 115094725 -35688828 - L1PA3 LINE L1 0 6155 5605 3042 7 0 0 chr11 115094725 115095129 -35688424 + L1PA3 LINE L1 5197 5600 -555 1487 317 191 38 chr11 115095150 115096409 -35687144 + L2 LINE L2 1279 2730 -584 21 36 0 0 chr11 115097158 115097186 -35686367 + AT_rich Low_complexity Low_complexity 1 28 0 408 104 0 65 chr11 115097186 115097263 -35686290 - L1PA3 LINE L1 0 6155 6084 802 92 0 61 chr11 115097325 115097456 -35686097 - L1PA7 LINE L1 -873 5273 5151 6720 65 6 0 chr11 115097456 115098327 -35685226 + L1PA7 LINE L1 5265 6146 -8 209 354 39 39 chr11 115098344 115098471 -35685082 - L2 LINE L2 -8 3264 3138 678 172 0 0 chr11 115098572 115098688 -35684865 + FLAM_C SINE Alu 2 117 -16 222 37 0 0 chr11 115098689 115098716 -35684837 + (TG)n Simple_repeat Simple_repeat 2 28 0 342 272 0 22 chr11 115098716 115098808 -35684745 - L1MC4 LINE L1 -1339 6703 6614 913 189 6 0 chr11 115098818 115098982 -35684571 + AluJb SINE Alu 138 302 -10 21 36 0 0 chr11 115100131 115100159 -35683394 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 115101354 115101375 -35682178 + AT_rich Low_complexity Low_complexity 1 21 0 328 304 48 24 chr11 115101862 115102030 -35681523 + L2 LINE L2 3011 3182 -131 183 129 0 0 chr11 115102208 115102239 -35681314 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 378 345 148 28 chr11 115102546 115102903 -35680650 + L1MC/D LINE L1 5266 5665 -2143 3866 86 13 0 chr11 115103547 115104080 -35679473 - L1PA11 LINE L1 0 6174 5635 4510 152 31 10 chr11 115104080 115104857 -35678696 + L1P4 LINE L1 4511 5311 -863 216 0 0 0 chr11 115104857 115104881 -35678672 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4510 152 31 10 chr11 115104881 115105197 -35678356 + L1P4 LINE L1 5311 5619 -555 27 81 0 0 chr11 115105233 115105295 -35678258 + AT_rich Low_complexity Low_complexity 1 62 0 542 294 14 28 chr11 115105551 115105762 -35677791 - LTR16B LTR ERVL -17 447 240 230 361 132 27 chr11 115107796 115108015 -35675538 - MIR SINE MIR -16 246 5 249 203 81 142 chr11 115108920 115109012 -35674541 + MIR SINE MIR 15 96 -166 2294 116 3 0 chr11 115109012 115109323 -35674230 - AluSx SINE Alu 0 312 1 249 203 81 142 chr11 115109323 115109378 -35674175 + MIR SINE MIR 96 153 -109 2080 150 45 68 chr11 115111264 115111704 -35671849 - MSTB1 LTR MaLR -2 430 1 214 272 49 12 chr11 115111794 115111875 -35671678 - MIR SINE MIR -95 167 84 1507 178 18 11 chr11 115112835 115113110 -35670443 + Tigger4(Zombi) DNA MER2_type 1 277 -2454 4561 147 10 14 chr11 115113162 115113940 -35669613 + Tigger4(Zombi) DNA MER2_type 1895 2669 -62 22 35 0 0 chr11 115114184 115114213 -35669340 + GC_rich Low_complexity Low_complexity 1 29 0 3911 176 98 47 chr11 115114521 115115554 -35667999 - pTR5 LTR ERV1 -610 1828 743 5515 154 14 6 chr11 115115554 115116486 -35667067 + Tigger1 DNA MER2_type 236 1174 -1244 275 130 19 0 chr11 115116741 115116795 -35666758 + (TG)n Simple_repeat Simple_repeat 2 56 0 371 184 23 17 chr11 115116856 115117030 -35666523 + (TA)n Simple_repeat Simple_repeat 2 176 0 221 188 30 23 chr11 115117041 115117174 -35666379 + (TA)n Simple_repeat Simple_repeat 2 135 0 337 158 0 18 chr11 115117554 115117611 -35665942 + MER3 DNA MER1_type 35 90 -119 687 175 12 70 chr11 115117635 115117756 -35665797 - L1MB1 LINE L1 -21 6168 6058 2432 56 0 7 chr11 115117756 115118058 -35665495 - AluY SINE Alu -11 300 1 687 175 12 70 chr11 115118058 115118107 -35665446 - L1MB1 LINE L1 -131 6058 6008 787 222 0 6 chr11 115118110 115118277 -35665276 - MER3 DNA MER1_type -28 181 16 201 74 0 0 chr11 115118396 115118423 -35665130 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1557 181 18 14 chr11 115118433 115118714 -35664839 - AluJo SINE Alu -30 282 1 323 233 164 9 chr11 115118952 115119068 -35664485 - L2 LINE L2 0 3313 3180 213 108 0 0 chr11 115119081 115119118 -35664435 + (TA)n Simple_repeat Simple_repeat 1 37 0 7046 136 1 0 chr11 115119335 115120445 -35663108 - L1P LINE L1 -1153 4993 3883 2127 123 0 3 chr11 115121030 115121330 -35662223 - AluSc SINE Alu -10 299 1 445 316 89 24 chr11 115122027 115122195 -35661358 - MIR SINE MIR -71 191 13 267 292 131 58 chr11 115122345 115122482 -35661071 + MER5A DNA MER1_type 43 189 0 309 26 0 0 chr11 115123690 115123728 -35659825 + (TG)n Simple_repeat Simple_repeat 2 39 0 237 65 0 0 chr11 115124269 115124300 -35659253 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4043 113 14 12 chr11 115124300 115124886 -35658667 - LTR8 LTR ERV1 -104 587 1 7290 130 14 27 chr11 115124886 115125842 -35657711 - HUERS-P1 LTR ERV1 0 6263 5555 2292 98 0 10 chr11 115125842 115126148 -35657405 - AluSc SINE Alu -6 303 1 7290 130 14 27 chr11 115126148 115126762 -35656791 - HUERS-P1 LTR ERV1 -708 5555 4935 4389 156 14 57 chr11 115126756 115127680 -35655873 - HUERS-P1 LTR ERV1 -3958 1988 1120 * 315 49 0 0 chr11 115127680 115127721 -35655832 + (GA)n Simple_repeat Simple_repeat 2 42 0 4389 156 14 57 chr11 115127721 115127829 -35655724 - HUERS-P1 LTR ERV1 -4826 1120 1009 2295 76 152 231 chr11 115128019 115128036 -35655517 + LTR12 LTR ERV1 35 52 -662 2580 23 10 7 chr11 115128036 115128344 -35655209 - AluYb8 SINE Alu -9 309 1 2295 76 152 231 chr11 115128344 115129039 -35654514 + LTR12 LTR ERV1 52 690 -24 1108 198 45 16 chr11 115129039 115129282 -35654271 - Tigger1 DNA MER2_type -2168 250 1 220 306 106 0 chr11 115129848 115129933 -35653620 - L2 LINE L2 -1 3312 3219 22 0 0 0 chr11 115130185 115130207 -35653346 + AT_rich Low_complexity Low_complexity 1 22 0 367 165 9 104 chr11 115131253 115131368 -35652185 - L1MCb LINE L1 -4581 1983 1880 * 764 220 7 61 chr11 115131364 115131612 -35651941 - L1MC2 LINE L1 -1 7766 6137 1832 257 38 25 chr11 115131628 115132308 -35651245 - L1M4 LINE L1 -1446 5511 4823 1791 232 101 22 chr11 115132410 115133045 -35650508 - L1MCb LINE L1 -4851 1194 567 286 341 22 43 chr11 115133068 115133206 -35650347 - L1MCb LINE L1 -5602 443 309 317 116 0 0 chr11 115133226 115133269 -35650284 - FRAM/FAM SINE Alu -100 75 33 387 250 64 6 chr11 115133272 115133428 -35650125 - L1M4 LINE L1 -4790 2169 2005 719 207 0 7 chr11 115133429 115133564 -35649989 - AluJb SINE Alu -178 134 1 1675 260 93 14 chr11 115133586 115134297 -35649256 - L1M4 LINE L1 -4861 1994 1228 248 178 44 0 chr11 115134560 115134605 -35648948 - L1M4 LINE L1 -5636 1223 1177 2446 265 49 55 chr11 115134814 115135815 -35647738 - L1M4 LINE L1 -5635 1224 4 45 0 0 0 chr11 115135978 115136023 -35647530 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr11 115136236 115136259 -35647294 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr11 115136410 115136439 -35647114 + AT_rich Low_complexity Low_complexity 1 29 0 654 260 64 0 chr11 115136984 115137157 -35646396 + MER82 DNA MER2_type 1 184 -469 229 173 19 0 chr11 115137163 115137215 -35646338 - L1PA13 LINE L1 -7 6156 6104 * 345 49 0 6 chr11 115137200 115137264 -35646289 - L1P5 LINE L1 -580 5576 5514 * 1222 209 10 10 chr11 115137258 115137550 -35646003 - L1P LINE L1 -1429 4717 4426 2047 234 45 8 chr11 115137551 115138021 -35645532 + MER82 DNA MER2_type 167 653 0 398 129 20 40 chr11 115138609 115138710 -35644843 + (CATA)n Simple_repeat Simple_repeat 2 100 0 22 0 0 0 chr11 115139256 115139278 -35644275 + AT_rich Low_complexity Low_complexity 1 22 0 220 280 11 75 chr11 115141324 115141417 -35642136 - MIR SINE MIR -70 192 106 814 239 52 40 chr11 115141445 115141696 -35641857 + L2 LINE L2 3059 3312 -1 395 352 16 26 chr11 115141833 115142026 -35641527 + MIR SINE MIR 3 193 -69 250 316 0 0 chr11 115142081 115142160 -35641393 - MIR SINE MIR -89 173 95 1969 162 7 0 chr11 115142160 115142469 -35641084 + AluSx SINE Alu 1 311 -1 1143 81 0 27 chr11 115142520 115142585 -35640968 + (GAAA)n Simple_repeat Simple_repeat 1 243 0 1143 81 0 27 chr11 115142585 115142770 -35640783 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4906 137 44 16 chr11 115142987 115143857 -35639696 + Tigger3b DNA MER2_type 338 1231 0 322 94 31 0 chr11 115144145 115144209 -35639344 + CT-rich Low_complexity Low_complexity 2 67 0 237 139 0 0 chr11 115144657 115144700 -35638853 + (GA)n Simple_repeat Simple_repeat 1 43 0 245 188 31 0 chr11 115145042 115145106 -35638447 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 369 284 120 27 chr11 115145570 115145753 -35637800 + MIR SINE MIR 36 235 -27 198 0 0 0 chr11 115145957 115145979 -35637574 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 346 323 72 6 chr11 115146410 115146577 -35636976 - L1MCa LINE L1 -4832 1550 1373 1694 73 0 17 chr11 115146627 115146860 -35636693 - L1PA7 LINE L1 0 6154 5926 1787 156 3 3 chr11 115146860 115147142 -35636411 + L1PA12 LINE L1 116 397 -7184 1904 305 71 0 chr11 115147152 115147519 -35636034 - L1PA7 LINE L1 -211 5943 5551 394 287 57 19 chr11 115147519 115147728 -35635825 - L1MCa LINE L1 -4987 1397 1181 1600 140 8 0 chr11 115147749 115148014 -35635539 - L1PA14 LINE L1 0 6161 5895 596 118 0 0 chr11 115148015 115148100 -35635453 - L1PA12 LINE L1 -7490 91 7 932 170 108 5 chr11 115148658 115148852 -35634701 - Tigger1 DNA MER2_type -3 2415 2202 892 162 0 19 chr11 115148848 115149002 -35634551 - Tigger1 DNA MER2_type -2267 151 1 * 1774 46 67 13 chr11 115151644 115151882 -35631671 + L1PA5 LINE L1 5904 6154 0 589 269 47 9 chr11 115152287 115152499 -35631054 + L1M4 LINE L1 2168 2387 -3759 261 275 75 46 chr11 115152487 115152833 -35630720 - L1MEc LINE L1 -4135 2261 1906 * 366 168 42 8 chr11 115152854 115152973 -35630580 + (TA)n Simple_repeat Simple_repeat 1 123 0 189 0 0 0 chr11 115152973 115152994 -35630559 + (CA)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr11 115153076 115153097 -35630456 + AT_rich Low_complexity Low_complexity 1 21 0 1092 263 61 10 chr11 115153898 115154191 -35629362 - MLT1I LTR MaLR -15 394 87 2393 64 3 3 chr11 115155867 115156164 -35627389 - AluY SINE Alu -14 297 1 198 362 0 0 chr11 115156339 115156397 -35627156 + MIR SINE MIR 42 99 -109 396 332 89 21 chr11 115156460 115156650 -35626903 - MIR SINE MIR -56 206 4 324 276 8 32 chr11 115156936 115157059 -35626494 + L1MC4 LINE L1 6612 6731 -1311 2007 78 0 19 chr11 115158163 115158420 -35625133 + AluY SINE Alu 48 299 -12 711 190 11 78 chr11 115158977 115159156 -35624397 + MLT1D LTR MaLR 1 167 -338 431 204 30 97 chr11 115159842 115160041 -35623512 - LTR33A LTR ERVL -17 506 344 1952 157 81 25 chr11 115160043 115160439 -35623114 + MSTB LTR MaLR 9 426 0 456 265 20 26 chr11 115160647 115160798 -35622755 - LTR50 LTR ERVL -628 167 18 2598 185 2 65 chr11 115161152 115161692 -35621861 - MLT2B2 LTR ERVL -7 508 3 537 256 181 19 chr11 115161751 115162021 -35621532 - HERVL LTR ERVL -1159 4495 4182 1026 312 38 28 chr11 115162059 115162485 -35621068 - HERVL LTR ERVL -1623 4141 3712 1431 118 66 0 chr11 115163110 115163322 -35620231 - MER30 DNA MER1_type -4 226 1 298 270 34 0 chr11 115163558 115163647 -35619906 - MLT1H LTR MaLR -242 307 216 184 318 16 0 chr11 115166233 115166296 -35617257 - L2 LINE L2 -4 3309 3246 1324 225 119 38 chr11 115166298 115166725 -35616828 - MLT1C LTR MaLR -2 465 4 246 156 0 0 chr11 115166833 115166878 -35616675 + (TA)n Simple_repeat Simple_repeat 2 46 0 2277 128 6 6 chr11 115166887 115167245 -35616308 + L1PB1 LINE L1 5791 6148 -3 279 54 0 0 chr11 115167886 115167923 -35615630 + (TAAAAA)n Simple_repeat Simple_repeat 4 40 0 242 272 240 16 chr11 115168245 115168370 -35615183 + MIR SINE MIR 60 212 -50 1253 209 41 45 chr11 115170257 115170549 -35613004 - AluJo SINE Alu -21 291 1 231 212 0 118 chr11 115170657 115170742 -35612811 - MIR SINE MIR -4 258 184 26 0 0 0 chr11 115170742 115170768 -35612785 + AT_rich Low_complexity Low_complexity 1 26 0 202 338 90 8 chr11 115171578 115171711 -35611842 + L2 LINE L2 2235 2378 -936 278 329 101 33 chr11 115171792 115172175 -35611378 + L2 LINE L2 2525 3048 -224 1755 168 7 75 chr11 115172400 115172816 -35610737 + MLT1B LTR MaLR 3 390 0 2214 109 3 0 chr11 115172956 115173258 -35610295 - AluSq SINE Alu -10 303 1 30 77 0 0 chr11 115173845 115173910 -35609643 + AT_rich Low_complexity Low_complexity 1 65 0 937 327 71 15 chr11 115174040 115174434 -35609119 - LTR16A LTR ERVL 0 450 35 182 245 20 0 chr11 115174525 115174574 -35608979 + MIR SINE MIR 105 154 -108 209 365 0 35 chr11 115174643 115174728 -35608825 - MIR3 SINE MIR -12 196 115 284 275 108 17 chr11 115174813 115174933 -35608620 - MIR SINE MIR -130 132 2 209 180 16 33 chr11 115175075 115175136 -35608417 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 199 191 29 15 chr11 115175339 115175407 -35608146 + GA-rich Low_complexity Low_complexity 4 72 0 25 51 0 0 chr11 115175710 115175749 -35607804 + AT_rich Low_complexity Low_complexity 1 39 0 201 39 0 0 chr11 115175782 115175808 -35607745 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1547 192 26 0 chr11 115175815 115176086 -35607467 - AluJb SINE Alu -34 278 1 267 355 33 20 chr11 115176302 115176454 -35607099 - L2 LINE L2 -203 3069 2916 351 322 112 38 chr11 115176484 115176751 -35606802 + MLT1K LTR MaLR 300 586 -2 1227 227 58 11 chr11 115176765 115177043 -35606510 + AluJo SINE Alu 1 291 -11 270 81 0 0 chr11 115177152 115177189 -35606364 + (CA)n Simple_repeat Simple_repeat 2 38 0 281 592 8 25 chr11 115178061 115178214 -35605339 - MIR SINE MIR -22 240 91 2471 101 17 6 chr11 115178214 115178571 -35604982 + THE1B LTR MaLR 4 364 0 281 592 8 25 chr11 115178571 115178657 -35604896 - MIR SINE MIR -171 91 5 783 132 8 0 chr11 115178669 115178790 -35604763 - L1PA11 LINE L1 -11 6163 6042 306 270 77 89 chr11 115179372 115179672 -35603881 - MLT1H LTR MaLR -107 323 1 27 0 0 0 chr11 115179679 115179706 -35603847 + AT_rich Low_complexity Low_complexity 1 27 0 1364 179 46 25 chr11 115179853 115180138 -35603415 + AluJb SINE Alu 6 296 -16 344 228 12 12 chr11 115180278 115180448 -35603105 + CT-rich Low_complexity Low_complexity 1 170 0 801 313 58 33 chr11 115180462 115180861 -35602692 + MLT1I LTR MaLR 1 409 0 21 0 0 0 chr11 115181013 115181034 -35602519 + AT_rich Low_complexity Low_complexity 1 21 0 1805 172 23 12 chr11 115182252 115182595 -35600958 - MER47A DNA MER2_type 0 366 20 332 102 0 17 chr11 115183336 115183395 -35600158 + (TA)n Simple_repeat Simple_repeat 2 59 0 233 255 0 11 chr11 115183989 115184083 -35599470 + (CATATA)n Simple_repeat Simple_repeat 3 95 0 25 31 0 0 chr11 115184318 115184350 -35599203 + AT_rich Low_complexity Low_complexity 1 32 0 1158 296 37 35 chr11 115185243 115185672 -35597881 + MLT1J1 LTR MaLR 9 438 -8 22 0 0 0 chr11 115186703 115186725 -35596828 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr11 115187666 115187691 -35595862 + AT_rich Low_complexity Low_complexity 1 25 0 307 351 61 8 chr11 115188347 115188478 -35595075 + MER91C DNA MER1_type 1 138 -2 6296 71 38 13 chr11 115188618 115189570 -35593983 - L1PA8A LINE L1 -4 6127 5160 4491 139 19 36 chr11 115189899 115190965 -35592588 - HUERS-P1 LTR ERV1 -5237 1026 1 1045 138 0 0 chr11 115190965 115191110 -35592443 - LTR8 LTR ERV1 0 691 547 299 343 229 18 chr11 115191478 115192038 -35591515 + L2 LINE L2 2196 2873 -441 593 316 56 0 chr11 115192354 115192569 -35590984 + MIR SINE MIR 13 239 -23 425 303 140 39 chr11 115192593 115192900 -35590653 - L2 LINE L2 -33 3280 2943 2086 112 0 40 chr11 115193273 115193576 -35589977 - AluSq SINE Alu -22 291 1 354 336 172 0 chr11 115195599 115195715 -35587838 - MIR3 SINE MIR -35 173 38 375 145 52 17 chr11 115196710 115196800 -35586753 - MER5A DNA MER1_type -77 112 4 317 287 134 48 chr11 115196850 115197059 -35586494 - MIR SINE MIR 0 262 36 753 276 25 32 chr11 115197118 115197705 -35585848 + L1ME LINE L1 5086 5664 -506 11560 193 12 27 chr11 115197718 115200310 -35583243 - L1MEc LINE L1 -1097 4983 2431 23 54 0 0 chr11 115200481 115200518 -35583035 + AT_rich Low_complexity Low_complexity 1 37 0 478 293 100 48 chr11 115200694 115201209 -35582344 - L1MEc LINE L1 -3998 2263 1776 1810 176 28 11 chr11 115201209 115201568 -35581985 - MLT1A1 LTR MaLR 0 365 1 478 293 100 48 chr11 115201568 115202303 -35581250 - L1MEc LINE L1 -4485 1776 948 230 306 68 36 chr11 115202400 115202619 -35580934 - L1MEc LINE L1 -5284 786 561 411 257 51 11 chr11 115202737 115202912 -35580641 - Charlie7 DNA MER1_type -298 2314 2133 272 269 48 0 chr11 115202956 115203060 -35580493 - LTR37B LTR ERV1 -159 309 201 1746 198 46 17 chr11 115203164 115203670 -35579883 - LTR69 LTR ERVL 0 588 4 197 267 33 33 chr11 115204724 115204784 -35578769 - MIR3 SINE MIR -11 197 138 919 244 120 29 chr11 115204857 115205173 -35578380 + MLT2C1 LTR ERVL 5 349 -48 276 30 0 0 chr11 115205291 115205324 -35578229 + (TC)n Simple_repeat Simple_repeat 2 34 0 243 262 141 73 chr11 115206272 115206463 -35577090 - L2 LINE L2 -5 3308 3105 213 248 0 0 chr11 115206973 115207086 -35576467 + (TA)n Simple_repeat Simple_repeat 2 114 0 216 0 0 0 chr11 115207113 115207137 -35576416 + (TA)n Simple_repeat Simple_repeat 1 24 0 1627 160 4 0 chr11 115207137 115207400 -35576153 - AluJb SINE Alu -38 274 11 852 202 33 16 chr11 115207715 115207898 -35575655 + MER5A DNA MER1_type 4 189 0 315 279 272 6 chr11 115207940 115208098 -35575455 + MIR SINE MIR 44 243 -19 562 167 136 19 chr11 115208320 115208482 -35575071 + MER53 DNA DNA 9 189 0 452 223 58 0 chr11 115208482 115208603 -35574950 + MIR SINE MIR 59 186 -76 3537 170 31 24 chr11 115209321 115210034 -35573519 - L1MC1 LINE L1 -16 6317 5600 1247 168 17 69 chr11 115210036 115210327 -35573226 + L1MC1 LINE L1 5319 5594 -739 329 237 17 52 chr11 115210985 115211158 -35572395 + C-rich Low_complexity Low_complexity 2 168 0 191 333 53 0 chr11 115211553 115211628 -35571925 + L2 LINE L2 3234 3312 -1 219 320 246 12 chr11 115211816 115212141 -35571412 + L2 LINE L2 1734 2134 -1180 1022 311 112 64 chr11 115212142 115212878 -35570675 + L2 LINE L2 2247 3018 -254 356 278 0 10 chr11 115213104 115213201 -35570352 + MIR3 SINE MIR 111 206 -2 404 343 18 6 chr11 115213907 115214076 -35569477 + MLT1L LTR MaLR 149 319 -296 1120 114 43 52 chr11 115214206 115214417 -35569136 - L1PB2 LINE L1 -4 6147 5939 23 0 0 0 chr11 115214448 115214471 -35569082 + AT_rich Low_complexity Low_complexity 1 23 0 1227 212 25 16 chr11 115214822 115215143 -35568410 - MER33 DNA MER1_type 0 324 1 191 188 21 0 chr11 115216205 115216253 -35567300 + GA-rich Low_complexity Low_complexity 4 52 0 500 276 103 6 chr11 115216298 115216472 -35567081 + MIR SINE MIR 2 192 -70 1904 143 60 17 chr11 115217346 115217697 -35565856 + MER47A DNA MER2_type 1 366 0 194 324 132 15 chr11 115217814 115217950 -35565603 - L2 LINE L2 -24 3289 3138 21 36 0 0 chr11 115218462 115218490 -35565063 + AT_rich Low_complexity Low_complexity 1 28 0 796 44 18 0 chr11 115218706 115218819 -35564734 + (TAGA)n Simple_repeat Simple_repeat 2 116 0 246 346 39 39 chr11 115220980 115221084 -35562469 - L2 LINE L2 0 3313 3210 4299 150 45 43 chr11 115222312 115223198 -35560355 - L1PA16 LINE L1 -3 6163 5276 551 340 34 34 chr11 115223871 115224133 -35559420 + L2 LINE L2 2629 2890 -424 276 323 125 32 chr11 115224189 115224468 -35559085 + L2 LINE L2 3003 3307 -6 267 297 9 54 chr11 115224476 115224587 -35558966 - MIR3 SINE MIR -98 110 5 185 323 32 40 chr11 115225673 115225797 -35557756 - MIR SINE MIR -60 202 80 180 158 0 0 chr11 115226157 115226195 -35557358 + A-rich Low_complexity Low_complexity 1 38 0 241 428 62 3 chr11 115226920 115227069 -35556484 - L2 LINE L2 -566 2748 2609 1872 149 3 29 chr11 115227069 115227377 -35556176 + AluJb SINE Alu 1 300 -12 241 428 62 3 chr11 115227377 115227580 -35555973 - L2 LINE L2 -705 2609 2375 746 268 56 5 chr11 115228450 115228663 -35554890 + MER58A DNA MER1_type 1 224 0 420 113 16 0 chr11 115228763 115228825 -35554728 - L1MA7 LINE L1 -626 5665 5603 * 1877 148 166 20 chr11 115228823 115229227 -35554326 + L1MA7 LINE L1 5665 6127 -164 543 274 73 45 chr11 115229867 115230090 -35553463 + MIR SINE MIR 22 254 -8 38 75 0 0 chr11 115230482 115230562 -35552991 + AT_rich Low_complexity Low_complexity 1 80 0 424 290 19 9 chr11 115230819 115230926 -35552627 - L2 LINE L2 -2 3270 3163 328 363 0 24 chr11 115230940 115231064 -35552489 - MIR SINE MIR -141 121 1 5622 121 19 3 chr11 115231300 115232747 -35550806 + L1PA14 LINE L1 4698 6159 -2 1806 181 6 3 chr11 115232911 115233225 -35550328 + MLT1A1 LTR MaLR 1 315 -50 278 169 0 34 chr11 115233517 115233576 -35549977 + LTR67 LTR ERVL 490 546 -11 2110 155 14 3 chr11 115235340 115235701 -35547852 + MLT1A1 LTR MaLR 1 365 0 45 0 0 0 chr11 115235998 115236043 -35547510 + AT_rich Low_complexity Low_complexity 1 45 0 311 256 73 0 chr11 115236043 115236125 -35547428 + L1MC4 LINE L1 6612 6699 -1343 1278 154 0 45 chr11 115236125 115236346 -35547207 - AluSx SINE Alu -101 211 1 209 311 128 56 chr11 115236916 115237096 -35546457 - MIR3 SINE MIR -13 195 3 220 239 115 53 chr11 115239491 115239604 -35543949 - L2 LINE L2 -12 3301 3182 213 322 33 11 chr11 115239674 115239764 -35543789 - MIR SINE MIR -108 154 63 439 369 53 5 chr11 115240434 115240640 -35542913 + L3 LINE CR1 1338 1553 -24 200 200 18 0 chr11 115240737 115240792 -35542761 + GA-rich Low_complexity Low_complexity 2 57 0 1631 242 108 37 chr11 115241024 115241701 -35541852 + MER50 LTR ERV1 10 734 0 258 32 0 0 chr11 115243600 115243631 -35539922 + (TG)n Simple_repeat Simple_repeat 2 32 0 218 127 56 0 chr11 115243682 115243753 -35539800 + (TA)n Simple_repeat Simple_repeat 1 75 0 608 317 104 62 chr11 115243755 115244516 -35539037 + L1MEc LINE L1 785 1593 -4803 2095 115 0 3 chr11 115244516 115244821 -35538732 + AluSg SINE Alu 1 304 -6 608 317 104 62 chr11 115244821 115244979 -35538574 + L1MEc LINE L1 1593 1743 -4653 267 31 0 0 chr11 115245136 115245168 -35538385 + (A)n Simple_repeat Simple_repeat 1 32 0 216 308 17 34 chr11 115246984 115247101 -35536452 + L2 LINE L2 2646 2760 -554 380 237 152 38 chr11 115247536 115247715 -35535838 + MIR SINE MIR 6 197 -63 21 0 0 0 chr11 115248228 115248249 -35535304 + AT_rich Low_complexity Low_complexity 1 21 0 1596 218 14 17 chr11 115248952 115249306 -35534247 - MLT1A1 LTR MaLR 0 365 13 25 83 0 0 chr11 115251641 115251701 -35531852 + AT_rich Low_complexity Low_complexity 1 60 0 23 68 0 0 chr11 115252894 115252938 -35530615 + AT_rich Low_complexity Low_complexity 1 44 0 332 198 77 22 chr11 115253328 115253419 -35530134 + MIR SINE MIR 110 205 -57 498 310 172 5 chr11 115253654 115253857 -35529696 + MIR SINE MIR 22 258 -4 272 260 26 13 chr11 115254596 115254673 -35528880 + MER103 DNA DNA 3 80 -86 23 0 0 0 chr11 115255135 115255158 -35528395 + AT_rich Low_complexity Low_complexity 1 23 0 4881 57 2 2 chr11 115255180 115255798 -35527755 - L1PA5 LINE L1 -2 6152 5535 189 0 0 0 chr11 115256254 115256275 -35527278 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 207 0 0 0 chr11 115258540 115258563 -35524990 + (TG)n Simple_repeat Simple_repeat 2 24 0 2662 167 13 64 chr11 115258960 115259492 -35524061 + MLT2B2 LTR ERVL 11 515 0 1626 186 74 122 chr11 115261201 115261716 -35521837 + MLT1D LTR MaLR 3 492 -13 193 369 21 43 chr11 115262393 115262534 -35521019 - MIR SINE MIR -119 143 6 338 229 105 8 chr11 115262647 115262783 -35520770 - L1P1 LINE L1 -364 5757 5625 215 61 30 0 chr11 115263650 115263683 -35519870 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 878 183 0 35 chr11 115264268 115264437 -35519116 - FRAM SINE Alu -6 170 8 334 340 39 30 chr11 115264890 115265093 -35518460 - L2 LINE L2 -540 2774 2570 436 293 0 32 chr11 115266123 115266280 -35517273 - L1MC5 LINE L1 -47 7914 7763 207 114 0 0 chr11 115266494 115266529 -35517024 + (TA)n Simple_repeat Simple_repeat 2 36 0 371 172 101 20 chr11 115267131 115267230 -35516323 - L1MCb LINE L1 -5049 996 890 315 0 0 0 chr11 115267230 115267265 -35516288 + (T)n Simple_repeat Simple_repeat 1 35 0 2182 97 0 3 chr11 115267373 115267663 -35515890 - AluSp SINE Alu -24 289 1 1039 180 31 22 chr11 115267670 115267898 -35515655 + LTR54 LTR ERV1 281 510 0 1656 189 0 13 chr11 115267986 115268292 -35515261 - AluJo SINE Alu -8 304 3 357 330 92 31 chr11 115269092 115269353 -35514200 + L2 LINE L2 3031 3307 -6 23 0 0 0 chr11 115269354 115269377 -35514176 + AT_rich Low_complexity Low_complexity 1 23 0 444 280 49 49 chr11 115269566 115269709 -35513844 - MER5A DNA MER1_type -30 159 17 198 343 56 28 chr11 115269720 115269863 -35513690 - MER5B DNA MER1_type -3 175 29 * 216 319 92 35 chr11 115269739 115269880 -35513673 + MER5A DNA MER1_type 34 182 -7 23 33 0 0 chr11 115270048 115270078 -35513475 + AT_rich Low_complexity Low_complexity 1 30 0 312 70 0 0 chr11 115270329 115270337 -35513216 + (CCA)n Simple_repeat Simple_repeat 1 51 0 312 70 0 0 chr11 115270337 115270380 -35513173 + (CCA)n Simple_repeat Simple_repeat 1 43 0 3305 228 31 56 chr11 115270950 115271655 -35511898 + L1M4 LINE L1 3433 4154 -1992 180 0 0 0 chr11 115271655 115271675 -35511878 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3305 228 31 56 chr11 115271675 115271697 -35511856 + L1M4 LINE L1 4154 4175 -1971 1842 183 0 3 chr11 115271697 115271998 -35511555 + AluJb SINE Alu 2 301 -11 3305 228 31 56 chr11 115271998 115272394 -35511159 + L1M4 LINE L1 4175 4529 -1617 3298 218 39 44 chr11 115272391 115273405 -35510148 + L1MC1 LINE L1 4389 5396 -750 * 1334 197 48 14 chr11 115273412 115273881 -35509672 + AluJo SINE Alu 3 481 0 615 168 0 50 chr11 115273897 115274016 -35509537 + L1MC1 LINE L1 5385 5497 -836 363 219 0 37 chr11 115274017 115274099 -35509454 + Tigger5 DNA MER2_type 1 79 -2244 322 274 0 0 chr11 115274101 115274174 -35509379 - Tigger5 DNA MER2_type -6 2317 2245 * 422 179 39 0 chr11 115274167 115274245 -35509308 + Tigger5 DNA MER2_type 2242 2322 -1 3191 174 41 5 chr11 115274250 115274841 -35508712 + L1MC1 LINE L1 5501 6112 -221 * 5047 112 10 14 chr11 115274840 115275305 -35508248 + L1PB1 LINE L1 5254 5777 -374 273 57 0 0 chr11 115275305 115275340 -35508213 + (TG)n Simple_repeat Simple_repeat 2 36 0 5047 112 10 14 chr11 115275340 115275714 -35507839 + L1PB1 LINE L1 5777 6151 0 229 235 39 0 chr11 115276128 115276179 -35507374 - MER34 LTR ERV1 -108 434 382 3774 178 22 25 chr11 115276198 115276956 -35506597 + Tigger2 DNA MER2_type 2 757 -1961 1356 166 15 19 chr11 115277008 115277267 -35506286 + Tigger2 DNA MER2_type 2461 2718 0 426 258 107 59 chr11 115277267 115277577 -35505976 - MER39 LTR ERV1 -172 535 3 705 235 100 0 chr11 115277579 115277779 -35505774 - L1ME2 LINE L1 -316 5917 5698 2608 289 99 24 chr11 115277782 115278990 -35504563 - L1ME2 LINE L1 -651 5584 4468 1999 138 3 0 chr11 115278990 115279281 -35504272 + AluSx SINE Alu 1 292 -20 5542 68 6 0 chr11 115279281 115280002 -35503551 + L1PA7 LINE L1 5426 6150 -4 2608 289 99 24 chr11 115280002 115280470 -35503083 - L1ME2 LINE L1 -1767 4468 3760 2039 135 10 0 chr11 115280470 115280774 -35502779 - AluSq SINE Alu -6 307 1 2608 289 99 24 chr11 115280774 115280913 -35502640 - L1ME2 LINE L1 -2475 3760 3633 592 242 36 6 chr11 115280906 115281071 -35502482 - L1ME2 LINE L1 -3568 2647 2478 * 765 299 37 17 chr11 115281064 115281358 -35502195 - L1ME2 LINE L1 -5838 558 259 26 64 0 0 chr11 115285719 115285766 -35497787 + AT_rich Low_complexity Low_complexity 1 47 0 24 53 0 0 chr11 115285830 115285868 -35497685 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr11 115287464 115287488 -35496065 + AT_rich Low_complexity Low_complexity 1 24 0 186 310 133 0 chr11 115287576 115287689 -35495864 - MIR SINE MIR -1 261 134 245 195 39 16 chr11 115288273 115288401 -35495152 + (TA)n Simple_repeat Simple_repeat 2 132 0 2365 220 63 12 chr11 115289489 115290094 -35493459 - LTR1B LTR ERV1 0 826 191 504 0 0 0 chr11 115290094 115290150 -35493403 + (TTTC)n Simple_repeat Simple_repeat 4 59 0 2257 86 7 0 chr11 115290157 115290459 -35493094 - L1PA7 LINE L1 -6 6148 5845 2270 97 3 0 chr11 115290559 115290859 -35492694 - AluSx SINE Alu -11 301 1 2822 247 38 50 chr11 115290860 115291774 -35491779 - L1MCb LINE L1 -5142 903 1 26 0 0 0 chr11 115292104 115292130 -35491423 + AT_rich Low_complexity Low_complexity 1 26 0 2692 163 15 11 chr11 115292223 115292746 -35490807 - L1MA4 LINE L1 -1 6299 5775 717 240 125 21 chr11 115293155 115293442 -35490111 + L1MC5 LINE L1 6980 7296 -665 259 171 0 0 chr11 115293478 115293519 -35490034 - L1MC5 LINE L1 -593 7368 7328 28 29 0 0 chr11 115293588 115293623 -35489930 + AT_rich Low_complexity Low_complexity 1 35 0 245 325 12 0 chr11 115293868 115293948 -35489605 - MIR SINE MIR -108 154 74 348 220 5 0 chr11 115294112 115294221 -35489332 + L1ME1 LINE L1 5585 5696 -488 692 236 192 5 chr11 115294228 115294431 -35489122 - MLT1D LTR MaLR 0 505 265 1231 271 79 2 chr11 115294472 115294904 -35488649 + L1ME1 LINE L1 5697 6161 -5 284 327 28 19 chr11 115296683 115296790 -35486763 + L3 LINE CR1 1459 1566 -11 253 344 22 0 chr11 115298255 115298345 -35485208 + MIR SINE MIR 43 134 -128 214 338 39 13 chr11 115298613 115298690 -35484863 - L2 LINE L2 -8 3305 3227 680 197 0 21 chr11 115298820 115298962 -35484591 - FRAM SINE Alu -3 173 35 186 43 0 0 chr11 115299136 115299159 -35484394 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1600 202 3 10 chr11 115299161 115299453 -35484100 - AluJo SINE Alu -22 290 1 1358 231 81 9 chr11 115300654 115300987 -35482566 + LTR18A LTR ERVL 1 357 0 286 276 79 39 chr11 115300995 115301122 -35482431 + MER5A DNA MER1_type 55 186 -3 285 321 37 18 chr11 115301024 115301133 -35482420 - MER5A DNA MER1_type -72 117 7 * 2191 107 0 3 chr11 115301879 115302188 -35481365 + AluSc SINE Alu 1 308 -1 25 0 0 0 chr11 115302444 115302469 -35481084 + AT_rich Low_complexity Low_complexity 1 25 0 212 225 146 45 chr11 115303209 115303298 -35480255 + L3 LINE CR1 381 478 -1099 3100 217 68 9 chr11 115303858 115304041 -35479512 + Charlie1a DNA MER1_type 52 223 -2538 279 0 0 0 chr11 115304041 115304072 -35479481 + (CA)n Simple_repeat Simple_repeat 2 32 0 3100 217 68 9 chr11 115304072 115304673 -35478880 + Charlie1a DNA MER1_type 223 882 -573 27 29 0 0 chr11 115305397 115305431 -35478122 + AT_rich Low_complexity Low_complexity 1 34 0 303 324 28 60 chr11 115305614 115305830 -35477723 - L3b LINE CR1 -252 1331 1123 25 0 0 0 chr11 115306123 115306148 -35477405 + AT_rich Low_complexity Low_complexity 1 25 0 1254 314 41 17 chr11 115307043 115307502 -35476051 + LTR16C LTR ERVL 4 473 -18 1590 239 82 25 chr11 115307684 115308070 -35475483 - MLT1D LTR MaLR -2 503 84 243 0 0 0 chr11 115308070 115308097 -35475456 + (CA)n Simple_repeat Simple_repeat 2 28 0 1590 239 82 25 chr11 115308097 115308186 -35475367 - MLT1D LTR MaLR -421 84 1 476 183 113 0 chr11 115308656 115308771 -35474782 - MLT1F1 LTR MaLR -228 339 212 351 217 43 11 chr11 115308762 115308854 -35474699 + MLT1F1 LTR MaLR 473 567 0 * 810 361 21 16 chr11 115308877 115309259 -35474294 + HERVL LTR ERVL 4014 4397 -1257 2337 89 3 22 chr11 115309454 115309770 -35473783 + AluSg SINE Alu 1 310 0 261 0 0 0 chr11 115309879 115309908 -35473645 + (A)n Simple_repeat Simple_repeat 1 29 0 465 337 57 28 chr11 115309940 115310400 -35473153 + HERVL LTR ERVL 4684 5156 -608 281 233 191 69 chr11 115310707 115310896 -35472657 + MLT1J1 LTR MaLR 3 214 -232 334 390 20 73 chr11 115311786 115312240 -35471313 + L2 LINE L2 2825 3254 -18 1903 258 34 18 chr11 115313408 115313973 -35469580 - L1ME1 LINE L1 -14 6152 5579 623 277 64 67 chr11 115313994 115314413 -35469140 - L1MCc LINE L1 -5983 440 23 632 187 0 0 chr11 115314982 115315089 -35468464 + MSTB1 LTR MaLR 1 107 -319 1120 179 10 10 chr11 115315094 115315290 -35468263 + MSTB1 LTR MaLR 224 419 -13 333 346 86 53 chr11 115315591 115315834 -35467719 + L2 LINE L2 2985 3235 -37 5265 183 14 25 chr11 115315913 115317067 -35466486 + L1MC2 LINE L1 5195 6336 -8 299 217 26 78 chr11 115317409 115317524 -35466029 - MIR SINE MIR -50 212 104 192 200 0 0 chr11 115317702 115317742 -35465811 + CT-rich Low_complexity Low_complexity 2 41 0 1095 329 40 30 chr11 115319026 115319647 -35463906 - L2 LINE L2 0 3313 2681 356 256 10 158 chr11 115320116 115320180 -35463373 + MER5B DNA MER1_type 4 76 -102 2108 122 0 7 chr11 115320180 115320468 -35463085 + AluSq SINE Alu 3 288 -25 356 256 10 158 chr11 115320468 115320606 -35462947 + MER5B DNA MER1_type 76 176 -2 213 345 62 28 chr11 115320644 115320789 -35462764 - MER5A DNA MER1_type 0 189 40 471 335 137 41 chr11 115320847 115321357 -35462196 - L3 LINE CR1 -104 1473 827 21 0 0 0 chr11 115321462 115321483 -35462070 + AT_rich Low_complexity Low_complexity 1 21 0 1632 248 203 2 chr11 115321804 115322356 -35461197 + MLT2F LTR ERVL 1 663 0 1482 284 89 28 chr11 115322575 115323286 -35460267 + L1MCc LINE L1 780 1533 -4890 27 0 0 0 chr11 115323298 115323325 -35460228 + AT_rich Low_complexity Low_complexity 1 27 0 465 229 51 127 chr11 115323521 115323774 -35459779 + L1MCc LINE L1 2231 2464 -4658 2545 280 66 20 chr11 115323776 115325115 -35458438 + L1MCc LINE L1 2754 4125 -2816 953 119 34 23 chr11 115325115 115325291 -35458262 + L1MA2 LINE L1 6127 6304 0 2545 280 66 20 chr11 115325291 115325378 -35458175 + L1MCc LINE L1 4125 4207 -2734 1232 146 8 59 chr11 115325360 115325599 -35457954 - L1PA16 LINE L1 -278 5888 5662 * 1484 111 12 0 chr11 115325595 115325914 -35457639 + L1P4 LINE L1 5162 5485 -681 * 7404 15 0 1 chr11 115325913 115327291 -35456262 - L1HS LINE L1 -61 6094 4718 351 0 0 0 chr11 115327358 115327397 -35456156 + (TG)n Simple_repeat Simple_repeat 1 39 0 318 289 47 84 chr11 115327520 115327710 -35455843 - L1ME2 LINE L1 -13 6151 5969 279 0 0 0 chr11 115327850 115327881 -35455672 + (A)n Simple_repeat Simple_repeat 1 31 0 429 322 87 12 chr11 115328013 115328255 -35455298 + L1MEc LINE L1 1935 2194 -4202 962 256 159 40 chr11 115328385 115329194 -35454359 + L1MEc LINE L1 2385 3290 -2925 273 357 70 14 chr11 115329226 115329369 -35454184 + LTR16A LTR ERVL 34 184 -266 1767 311 90 30 chr11 115329951 115330830 -35452723 + HERV16 LTR ERVL 469 1400 -3596 1169 309 23 21 chr11 115330982 115331413 -35452140 + HERV16 LTR ERVL 1593 2024 -2972 22 0 0 0 chr11 115332599 115332621 -35450932 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 115332683 115332706 -35450847 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr11 115332747 115332784 -35450769 + AT_rich Low_complexity Low_complexity 1 37 0 1905 118 0 0 chr11 115333058 115333320 -35450233 + AluSx SINE Alu 35 296 -16 566 208 92 8 chr11 115333334 115333464 -35450089 + LTR54B LTR ERV1 1 141 -357 947 219 55 28 chr11 115333799 115334090 -35449463 + LTR1 LTR ERV1 1 278 -548 3244 66 12 11 chr11 115334090 115334821 -35448732 - L1PA6 LINE L1 -507 5647 4923 1720 67 9 0 chr11 115334821 115335046 -35448507 + L1PA6 LINE L1 5653 5879 -275 249 33 0 0 chr11 115335250 115335280 -35448273 + (A)n Simple_repeat Simple_repeat 1 30 0 2016 120 3 23 chr11 115335288 115335597 -35447956 + AluSx SINE Alu 1 303 -9 1223 131 11 0 chr11 115335602 115335793 -35447760 + L1P4 LINE L1 5479 5671 -495 223 47 0 47 chr11 115336080 115336123 -35447430 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 349 342 39 52 chr11 115336447 115336678 -35446875 - MIR SINE MIR -34 228 1 405 304 96 36 chr11 115336807 115337027 -35446526 + MIR SINE MIR 6 238 -24 470 253 103 86 chr11 115337835 115338183 -35445370 - L1MC4 LINE L1 0 8042 7689 1931 236 186 26 chr11 115338493 115339561 -35443992 - L1MC4 LINE L1 -373 7669 6342 911 267 21 75 chr11 115339560 115339946 -35443607 - L1ME2 LINE L1 -11 6222 5858 * 2857 268 65 43 chr11 115340441 115340567 -35442986 - L1ME2 LINE L1 -343 5890 5768 1519 193 10 33 chr11 115340567 115340872 -35442681 - AluJo SINE Alu -12 300 3 2857 268 65 43 chr11 115340872 115342837 -35440716 - L1ME2 LINE L1 -465 5768 3677 2821 143 36 36 chr11 115342841 115343400 -35440153 + MER34B LTR ERV1 7 565 0 412 279 163 19 chr11 115343453 115343535 -35440018 - L1ME2 LINE L1 -2579 3636 3567 360 59 0 0 chr11 115343535 115343586 -35439967 + (TG)n Simple_repeat Simple_repeat 2 52 0 412 279 163 19 chr11 115343586 115343761 -35439792 - L1ME2 LINE L1 -2648 3567 3342 273 140 20 0 chr11 115343912 115343962 -35439591 - Alu SINE Alu -4 298 248 389 284 103 34 chr11 115343993 115344313 -35439240 - L1ME2 LINE L1 -4130 2266 1925 263 230 11 0 chr11 115344657 115344744 -35438809 + CT-rich Low_complexity Low_complexity 2 89 0 1607 221 39 30 chr11 115345874 115346335 -35437218 - MLT1C LTR MaLR 0 467 3 580 238 91 43 chr11 115348732 115348807 -35434746 - MER58A DNA MER1_type -2197 223 153 1938 137 20 0 chr11 115348807 115349099 -35434454 + AluSx SINE Alu 1 298 -14 580 238 91 43 chr11 115349099 115349233 -35434320 - MER58A DNA MER1_type -2267 153 4 484 287 90 92 chr11 115349466 115349856 -35433697 + HAL1 LINE L1 26 414 -2093 1678 149 10 48 chr11 115349927 115350222 -35433331 + AluSq SINE Alu 6 289 -24 21 57 0 0 chr11 115350222 115350257 -35433296 + AT_rich Low_complexity Low_complexity 1 35 0 2248 162 32 5 chr11 115350257 115350658 -35432895 - L1PA16 LINE L1 -9 6157 5746 802 231 48 42 chr11 115350931 115351243 -35432310 + HAL1 LINE L1 803 1116 -1391 402 257 301 0 chr11 115351271 115351407 -35432146 - MER5A DNA MER1_type -3 186 10 501 279 104 95 chr11 115351407 115352196 -35431357 + HAL1 LINE L1 1127 1922 -585 1854 214 80 104 chr11 115352339 115353051 -35430502 - LTR8A LTR ERV1 0 727 33 225 0 0 0 chr11 115353594 115353619 -35429934 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 247 311 33 0 chr11 115353969 115354030 -35429523 - L2 LINE L2 -2 3311 3249 185 325 141 79 chr11 115354592 115354869 -35428684 + L2 LINE L2 2560 2853 -461 750 276 135 72 chr11 115354981 115355314 -35428239 + MLT1G1 LTR MaLR 1 384 -211 474 49 0 0 chr11 115355314 115355375 -35428178 + (GA)n Simple_repeat Simple_repeat 2 62 0 750 276 135 72 chr11 115355375 115355595 -35427958 + MLT1G1 LTR MaLR 384 589 -6 688 270 76 22 chr11 115355995 115356283 -35427270 - MLT1G1 LTR MaLR -323 267 1 299 263 40 40 chr11 115356871 115356970 -35426583 + MIR SINE MIR 14 112 -150 244 316 81 59 chr11 115357217 115357353 -35426200 + L2 LINE L2 3134 3272 0 23 33 0 0 chr11 115357367 115357397 -35426156 + AT_rich Low_complexity Low_complexity 1 30 0 762 161 0 0 chr11 115357397 115357515 -35426038 - FLAM_C SINE Alu -25 118 1 218 73 0 91 chr11 115357619 115357674 -35425879 + (TTTTA)n Simple_repeat Simple_repeat 4 53 0 21 0 0 0 chr11 115357886 115357907 -35425646 + AT_rich Low_complexity Low_complexity 1 21 0 448 240 39 0 chr11 115359167 115359271 -35424282 + MER68 LTR ERV1 424 531 -31 21 36 0 0 chr11 115359358 115359386 -35424167 + AT_rich Low_complexity Low_complexity 1 28 0 212 195 0 0 chr11 115359754 115359795 -35423758 + MIR SINE MIR 148 188 -74 389 262 82 22 chr11 115359887 115360070 -35423483 - L1M4 LINE L1 -1729 4417 4224 1336 286 3 0 chr11 115360073 115360440 -35423113 - L1M4 LINE L1 -2016 4130 3763 23 33 0 0 chr11 115360862 115360892 -35422661 + AT_rich Low_complexity Low_complexity 1 30 0 1490 179 30 3 chr11 115361208 115361505 -35422048 - L1MC1 LINE L1 -1 6332 6028 448 212 91 61 chr11 115361527 115361633 -35421920 - LTR37B LTR ERV1 -2 466 365 2287 91 7 0 chr11 115361633 115361940 -35421613 - AluSg SINE Alu -1 309 1 448 212 91 61 chr11 115361940 115362031 -35421522 - LTR37B LTR ERV1 -103 365 263 239 229 16 16 chr11 115362233 115362294 -35421259 - LTR37B LTR ERV1 -401 67 7 2304 196 97 10 chr11 115362761 115363275 -35420278 + MER89 LTR ERV1 1 559 0 186 301 178 20 chr11 115363337 115363483 -35420070 - L2 LINE L2 -4 3309 3141 234 150 0 0 chr11 115364092 115364132 -35419421 + (TG)n Simple_repeat Simple_repeat 1 40 0 3456 162 27 31 chr11 115364345 115364822 -35418731 - MER67C LTR ERV1 0 710 235 1935 140 26 34 chr11 115364822 115365200 -35418353 - THE1C LTR MaLR 0 375 1 3456 162 27 31 chr11 115365200 115365426 -35418127 - MER67C LTR ERV1 -475 235 10 687 220 101 0 chr11 115366926 115367085 -35416468 + FAM SINE Alu 1 175 0 198 0 0 0 chr11 115367334 115367356 -35416197 + (A)n Simple_repeat Simple_repeat 1 22 0 239 321 24 12 chr11 115367673 115367757 -35415796 - L2 LINE L2 -4 3268 3184 238 377 38 19 chr11 115367827 115367933 -35415620 + L2 LINE L2 3136 3243 -29 3024 199 32 31 chr11 115368509 115369219 -35414334 - L1MB8 LINE L1 -149 6265 5555 2740 175 22 9 chr11 115369219 115369757 -35413796 - L1MC1 LINE L1 0 6333 5789 5564 241 57 44 chr11 115369789 115371155 -35412398 - L1MB8 LINE L1 -1950 4432 3050 4980 149 8 12 chr11 115371155 115372849 -35410704 - L1PA16 LINE L1 -6 6160 4438 5564 241 57 44 chr11 115372849 115373728 -35409825 - L1MB8 LINE L1 -3332 3050 2184 1679 122 0 44 chr11 115373769 115374039 -35409514 + AluSg SINE Alu 38 295 -15 28 29 0 0 chr11 115374139 115374174 -35409379 + AT_rich Low_complexity Low_complexity 1 35 0 301 318 40 58 chr11 115374175 115374348 -35409205 - L1MB8 LINE L1 -4541 1843 1674 289 270 119 8 chr11 115375134 115375260 -35408293 + MIR3 SINE MIR 69 208 0 1399 210 42 64 chr11 115375605 115376009 -35407544 - MSTD LTR MaLR -1 395 1 32 26 0 0 chr11 115377689 115377728 -35405825 + AT_rich Low_complexity Low_complexity 1 39 0 260 289 24 36 chr11 115377853 115377936 -35405617 + MIR SINE MIR 21 102 -160 846 263 34 0 chr11 115378282 115378491 -35405062 - MER58A DNA MER1_type -6 218 3 202 339 0 15 chr11 115378702 115378767 -35404786 - MER5A DNA MER1_type -62 127 64 201 269 0 19 chr11 115378885 115378937 -35404616 + MIR SINE MIR 67 117 -145 1067 194 48 15 chr11 115379178 115379384 -35404169 - MER20 DNA MER1_type 0 219 7 281 361 0 15 chr11 115379463 115379596 -35403957 + MLT1E LTR MaLR 17 147 -446 4113 151 35 1 chr11 115379642 115379977 -35403576 - L1MA8 LINE L1 -3 6288 5954 5027 191 37 14 chr11 115379977 115381462 -35402091 - L1PB3 LINE L1 -224 5930 4408 2198 169 50 32 chr11 115381493 115381935 -35401618 - MSTB2 LTR MaLR 0 457 1 2321 167 22 20 chr11 115381935 115382385 -35401168 - L1PB3 LINE L1 -1749 4397 3947 337 216 8 53 chr11 115382416 115382535 -35401018 + MLT1E LTR MaLR 246 402 -191 442 210 90 0 chr11 115382703 115382803 -35400750 - L1 LINE L1 -2042 4104 3996 689 261 0 0 chr11 115382825 115382963 -35400590 + MER77 LTR ERV1 245 382 -223 537 250 53 20 chr11 115382980 115383132 -35400421 + MLT1E LTR MaLR 435 591 -2 23 0 0 0 chr11 115383148 115383171 -35400382 + AT_rich Low_complexity Low_complexity 1 23 0 2034 244 37 58 chr11 115383666 115384284 -35399269 + MER77 LTR ERV1 1 605 0 229 368 71 38 chr11 115384315 115384554 -35398999 + L3 LINE CR1 37 283 -1294 181 188 0 0 chr11 115384635 115384667 -35398886 + L2 LINE L2 3269 3300 -13 1099 280 96 30 chr11 115384686 115385146 -35398407 + L3 LINE CR1 280 769 -808 255 284 176 0 chr11 115385146 115385220 -35398333 + L3 LINE CR1 890 976 -601 261 57 0 0 chr11 115385248 115385283 -35398270 + (TG)n Simple_repeat Simple_repeat 2 36 0 199 120 20 20 chr11 115386381 115386431 -35397122 + (TA)n Simple_repeat Simple_repeat 1 50 0 1809 135 76 20 chr11 115386938 115387293 -35396260 + THE1C LTR MaLR 1 375 0 605 340 47 27 chr11 115387391 115387729 -35395824 - LTR16A LTR ERVL -6 444 100 206 137 41 41 chr11 115387953 115388026 -35395527 + (TTATA)n Simple_repeat Simple_repeat 5 77 0 22 0 0 0 chr11 115388503 115388525 -35395028 + AT_rich Low_complexity Low_complexity 1 22 0 473 291 57 6 chr11 115388967 115389125 -35394428 + MIR SINE MIR 5 170 -92 21 36 0 0 chr11 115389381 115389409 -35394144 + AT_rich Low_complexity Low_complexity 1 28 0 607 313 77 12 chr11 115389522 115389768 -35393785 - MIR SINE MIR 0 262 1 2143 167 40 5 chr11 115390381 115390758 -35392795 - MLT1B LTR MaLR 0 390 1 1996 121 3 10 chr11 115390816 115391113 -35392440 + AluSx SINE Alu 13 307 -5 23 0 0 0 chr11 115391815 115391838 -35391715 + AT_rich Low_complexity Low_complexity 1 23 0 1283 160 0 35 chr11 115392086 115392317 -35391236 + AluJo SINE Alu 87 309 -3 2341 109 0 0 chr11 115392404 115392716 -35390837 + AluSx SINE Alu 1 312 0 2102 138 0 0 chr11 115395164 115395461 -35388092 + AluSx SINE Alu 1 297 -15 1847 130 76 20 chr11 115395632 115395987 -35387566 + THE1C LTR MaLR 1 375 0 612 341 46 25 chr11 115396098 115396421 -35387132 - LTR16A LTR ERVL -21 429 100 206 137 41 41 chr11 115396645 115396718 -35386835 + (TTATA)n Simple_repeat Simple_repeat 5 77 0 22 0 0 0 chr11 115397195 115397217 -35386336 + AT_rich Low_complexity Low_complexity 1 22 0 473 291 57 6 chr11 115397659 115397817 -35385736 + MIR SINE MIR 5 170 -92 21 36 0 0 chr11 115398073 115398101 -35385452 + AT_rich Low_complexity Low_complexity 1 28 0 607 313 77 12 chr11 115398214 115398460 -35385093 - MIR SINE MIR 0 262 1 2143 167 40 5 chr11 115399073 115399450 -35384103 - MLT1B LTR MaLR 0 390 1 2016 118 3 10 chr11 115399508 115399805 -35383748 + AluSx SINE Alu 13 307 -5 22 0 0 0 chr11 115400505 115400527 -35383026 + AT_rich Low_complexity Low_complexity 1 22 0 1283 160 0 35 chr11 115400776 115401007 -35382546 + AluJo SINE Alu 87 309 -3 2074 113 0 0 chr11 115401094 115401368 -35382185 + AluSx SINE Alu 1 274 -38 468 0 0 0 chr11 115401369 115401421 -35382132 + (TA)n Simple_repeat Simple_repeat 2 53 0 218 207 24 24 chr11 115401500 115401582 -35381971 + (TA)n Simple_repeat Simple_repeat 2 83 0 210 292 104 21 chr11 115401925 115402021 -35381532 + MIR SINE MIR 38 141 -121 388 298 71 15 chr11 115402276 115402474 -35381079 + MIR SINE MIR 15 223 -39 2080 123 3 7 chr11 115402695 115403003 -35380550 - AluSq SINE Alu 0 313 7 321 47 0 0 chr11 115403009 115403052 -35380501 + (TTG)n Simple_repeat Simple_repeat 2 44 0 22 35 0 0 chr11 115403588 115403617 -35379936 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr11 115403821 115403852 -35379701 + AT_rich Low_complexity Low_complexity 1 31 0 22 80 0 0 chr11 115403973 115404023 -35379530 + AT_rich Low_complexity Low_complexity 1 50 0 295 301 14 0 chr11 115404184 115404257 -35379296 + MLT1K LTR MaLR 179 252 -336 376 200 76 55 chr11 115406594 115406739 -35376814 - LTR19A LTR ERV1 -12 474 327 4232 287 31 50 chr11 115406915 115408946 -35374607 - HERVFH19I LTR ERV1 0 7719 5717 541 275 14 0 chr11 115408955 115409097 -35374456 - HERVFH19I LTR ERV1 -2406 5313 5170 3088 231 32 36 chr11 115409359 115410142 -35373411 - HERVFH19I LTR ERV1 -5239 2480 1701 1099 270 20 25 chr11 115410535 115410893 -35372660 - HERVFH19I LTR ERV1 -4912 674 286 2520 59 0 0 chr11 115410893 115411197 -35372356 + AluY SINE Alu 1 304 -7 1099 270 20 25 chr11 115411197 115411481 -35372072 - HERVFH19I LTR ERV1 -5300 286 2 443 178 62 54 chr11 115411493 115411622 -35371931 - LTR19A LTR ERV1 -3 483 354 2118 106 7 3 chr11 115411624 115411925 -35371628 - AluSq SINE Alu -11 302 1 3799 158 46 51 chr11 115412123 115412832 -35370721 + MER4D LTR ERV1 1 461 -149 1973 72 8 0 chr11 115412832 115413096 -35370457 + L1PA6 LINE L1 5888 6153 -1 3799 158 46 51 chr11 115413096 115413245 -35370308 + MER4D LTR ERV1 461 609 -1 3100 169 67 54 chr11 115413365 115414140 -35369413 + LTR1 LTR ERV1 1 785 0 4139 77 13 0 chr11 115414546 115415093 -35368460 + MER41A LTR ERV1 1 554 0 406 270 141 53 chr11 115415325 115415400 -35368153 - L2 LINE L2 -37 3276 3209 1423 114 4 51 chr11 115415400 115415515 -35368038 - MER30 DNA MER1_type -4 226 126 1980 135 7 3 chr11 115415515 115415833 -35367720 - AluSg SINE Alu 0 310 1 1423 114 4 51 chr11 115415833 115415954 -35367599 - MER30 DNA MER1_type -104 126 1 406 270 141 53 chr11 115415954 115416182 -35367371 - L2 LINE L2 -104 3209 2946 205 301 203 38 chr11 115416327 115416460 -35367093 - MIR3 SINE MIR -21 187 33 189 0 0 0 chr11 115416777 115416798 -35366755 + (A)n Simple_repeat Simple_repeat 1 21 0 441 296 61 53 chr11 115417622 115418094 -35365459 + MLT1G1 LTR MaLR 75 579 -16 189 328 0 35 chr11 115418648 115418706 -35364847 + L2 LINE L2 3205 3260 -12 251 196 0 18 chr11 115418816 115418872 -35364681 - L1M4 LINE L1 -1981 4165 4111 491 312 111 6 chr11 115418895 115419228 -35364325 - L1M4 LINE L1 -2324 3822 3455 27 0 0 0 chr11 115419477 115419504 -35364049 + AT_rich Low_complexity Low_complexity 1 27 0 329 206 69 53 chr11 115419560 115419691 -35363862 + L1ME LINE L1 4549 4681 -1465 227 303 0 17 chr11 115419788 115419907 -35363646 + L1ME LINE L1 4929 5045 -1101 254 51 51 0 chr11 115419918 115419957 -35363596 - AluSc SINE Alu -174 125 85 721 294 73 23 chr11 115420028 115420530 -35363023 + L1ME LINE L1 5132 5659 -511 539 15 15 0 chr11 115420538 115420606 -35362947 + (TAGA)n Simple_repeat Simple_repeat 3 71 0 282 284 0 0 chr11 115420606 115420673 -35362880 + L1MC4a LINE L1 5572 5638 -2170 653 274 33 23 chr11 115420732 115420947 -35362606 - MER46C DNA MER2_type 0 338 122 459 243 9 154 chr11 115421017 115421231 -35362322 - MER5A DNA MER1_type 0 189 7 427 304 48 26 chr11 115423063 115423290 -35360263 + L1MC4a LINE L1 5719 5950 -1858 489 360 61 8 chr11 115423888 115424149 -35359404 + L3 LINE CR1 387 661 -916 12642 207 43 32 chr11 115424273 115428543 -35355010 + L1M2 LINE L1 5 4310 -2538 333 0 0 0 chr11 115428647 115428684 -35354869 + (TG)n Simple_repeat Simple_repeat 2 38 0 621 221 276 0 chr11 115429937 115430245 -35353308 - MER69 DNA AcHobo -9 2517 2125 947 280 44 44 chr11 115430251 115430374 -35353179 + MER69 DNA AcHobo 55 177 -1049 1576 216 40 14 chr11 115430374 115430726 -35352827 + MLT1A1 LTR MaLR 1 361 -4 947 280 44 44 chr11 115430726 115430941 -35352612 + MER69 DNA AcHobo 176 393 -833 389 255 46 20 chr11 115430940 115431093 -35352460 + MER69 DNA AcHobo 1959 2115 -411 * 246 159 0 23 chr11 115431203 115431247 -35352306 - MER69 DNA AcHobo -2482 44 2 218 306 163 0 chr11 115431269 115431367 -35352186 + MIR SINE MIR 28 141 -121 187 369 131 8 chr11 115431430 115431552 -35352001 - L2 LINE L2 -376 2938 2802 341 353 34 38 chr11 115431648 115431883 -35351670 - MIR SINE MIR 0 262 29 1491 185 7 23 chr11 115432716 115433024 -35350529 + AluSx SINE Alu 3 305 -7 1199 187 48 41 chr11 115434012 115434327 -35349226 + MER33 DNA MER1_type 8 324 0 237 320 128 23 chr11 115434573 115434745 -35348808 + MIR3 SINE MIR 1 190 -18 3848 104 16 2 chr11 115435260 115435806 -35347747 - MER41A LTR ERV1 0 554 1 1754 135 6 33 chr11 115436929 115437284 -35346269 - MER4A LTR ERV1 0 664 261 605 160 0 0 chr11 115437286 115437380 -35346173 - MER4A LTR ERV1 -568 96 3 2221 133 0 0 chr11 115437651 115437959 -35345594 - AluSx SINE Alu -4 308 1 2081 128 10 13 chr11 115440403 115440716 -35342837 - AluSx SINE Alu 0 312 1 462 36 0 0 chr11 115440793 115440849 -35342704 + (CA)n Simple_repeat Simple_repeat 1 56 0 581 296 50 47 chr11 115440849 115441056 -35342497 + L1MEc LINE L1 1116 1321 -5075 2071 123 3 29 chr11 115441056 115441372 -35342181 + AluSx SINE Alu 3 310 -2 581 296 50 47 chr11 115441372 115441788 -35341765 + L1MEc LINE L1 1321 1741 -4655 29 28 0 0 chr11 115441794 115441830 -35341723 + AT_rich Low_complexity Low_complexity 1 36 0 706 278 64 32 chr11 115441940 115442549 -35341004 + L1MEc LINE L1 2023 2618 -3597 922 207 51 65 chr11 115442560 115442835 -35340718 - MLT1D LTR MaLR -234 271 1 515 292 156 45 chr11 115443389 115443722 -35339831 - LTR16A1 LTR ERVL -3 454 104 458 294 137 36 chr11 115443889 115444137 -35339416 + L2 LINE L2 2830 3102 -211 439 279 101 45 chr11 115444198 115444377 -35339176 + MIR SINE MIR 35 223 -39 245 328 38 46 chr11 115444413 115444544 -35339009 + L2 LINE L2 3169 3298 -15 21 0 0 0 chr11 115444544 115444565 -35338988 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 115445326 115445347 -35338206 + (CA)n Simple_repeat Simple_repeat 2 22 0 2637 153 9 5 chr11 115445433 115445871 -35337682 - MER39B LTR ERV1 -213 440 1 1902 174 60 38 chr11 115446113 115446532 -35337021 + MSTA LTR MaLR 1 428 0 2167 117 0 3 chr11 115446651 115446949 -35336604 - AluSx SINE Alu -15 297 1 5311 140 14 33 chr11 115447073 115447985 -35335568 - MER4D LTR ERV1 -8 895 1 1295 142 133 51 chr11 115448277 115448593 -35334960 + MER4A LTR ERV1 1 342 -322 561 117 250 8 chr11 115448639 115448767 -35334786 + MER4C LTR ERV1 289 447 -18 505 262 89 30 chr11 115449031 115449199 -35334354 - MER5A DNA MER1_type 0 189 12 2221 215 21 43 chr11 115449199 115449682 -35333871 + MER70A LTR ERVL 1 472 0 23 0 0 0 chr11 115451746 115451769 -35331784 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr11 115452081 115452120 -35331433 + AT_rich Low_complexity Low_complexity 1 39 0 758 175 92 113 chr11 115452238 115452467 -35331086 - AluJo SINE Alu -17 295 72 726 155 21 63 chr11 115452481 115452623 -35330930 - AluJo SINE Alu -176 136 1 2386 87 0 0 chr11 115453022 115453321 -35330232 + AluSg SINE Alu 1 299 -11 220 331 154 0 chr11 115453631 115453761 -35329792 - MIR3 SINE MIR -29 179 30 213 250 66 53 chr11 115454827 115454903 -35328650 + MIR SINE MIR 90 166 -96 21 57 0 0 chr11 115455261 115455296 -35328257 + AT_rich Low_complexity Low_complexity 1 35 0 425 339 76 21 chr11 115455562 115455940 -35327613 + L1M4 LINE L1 4800 5207 -939 3616 153 18 15 chr11 115455940 115456612 -35326941 + L1MA4A LINE L1 5618 6291 -12 425 339 76 21 chr11 115456612 115456669 -35326884 + L1M4 LINE L1 5207 5259 -887 503 301 141 14 chr11 115456946 115457159 -35326394 - MIR SINE MIR 0 262 23 201 39 0 0 chr11 115457281 115457307 -35326246 + (TA)n Simple_repeat Simple_repeat 2 27 0 273 86 97 0 chr11 115457873 115457966 -35325587 + (TA)n Simple_repeat Simple_repeat 1 102 0 25 90 0 0 chr11 115457986 115458053 -35325500 + AT_rich Low_complexity Low_complexity 1 67 0 191 173 72 0 chr11 115458081 115458220 -35325333 + (TA)n Simple_repeat Simple_repeat 1 149 0 27 49 0 0 chr11 115458220 115458261 -35325292 + AT_rich Low_complexity Low_complexity 1 41 0 237 158 79 0 chr11 115458261 115458337 -35325216 + (TA)n Simple_repeat Simple_repeat 1 82 0 477 228 29 22 chr11 115459178 115459314 -35324239 - L1ME3A LINE L1 -3 6167 6031 434 227 0 0 chr11 115459509 115459584 -35323969 + MER21B LTR ERV1 13 87 -776 2639 244 99 22 chr11 115459607 115460341 -35323212 + MER21B LTR ERV1 21 811 -52 35 24 0 0 chr11 115460714 115460756 -35322797 + AT_rich Low_complexity Low_complexity 1 42 0 526 245 72 91 chr11 115460814 115461287 -35322266 - L1MC5 LINE L1 -137 7824 7361 543 243 122 49 chr11 115461320 115461567 -35321986 - L1MC5 LINE L1 -684 7277 7013 236 86 97 11 chr11 115461846 115461939 -35321614 + (TA)n Simple_repeat Simple_repeat 2 102 0 358 273 88 119 chr11 115462804 115463064 -35320489 + LTR67 LTR ERVL 115 366 -191 2560 118 256 29 chr11 115463913 115464428 -35319125 - MER51A LTR ERV1 -2 632 1 544 191 0 0 chr11 115465718 115465828 -35317725 + L1MA9 LINE L1 6203 6312 0 324 0 0 0 chr11 115465864 115465900 -35317653 + (TG)n Simple_repeat Simple_repeat 2 37 0 1633 297 66 23 chr11 115467308 115468333 -35315220 + L1M4c LINE L1 780 1848 -4536 21 57 0 0 chr11 115468606 115468641 -35314912 + AT_rich Low_complexity Low_complexity 1 35 0 657 283 12 0 chr11 115468752 115468925 -35314628 + MLT1D LTR MaLR 22 196 -309 670 224 52 14 chr11 115468932 115469142 -35314411 + L1MB8 LINE L1 5099 5316 -830 229 226 0 19 chr11 115469160 115469213 -35314340 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 3692 193 18 42 chr11 115469213 115470095 -35313458 + L1MB8 LINE L1 5318 6178 0 225 0 0 0 chr11 115470288 115470313 -35313240 + (A)n Simple_repeat Simple_repeat 1 25 0 665 214 48 0 chr11 115470732 115470877 -35312676 - MER5A DNA MER1_type -4 185 34 2557 34 0 0 chr11 115471034 115471331 -35312222 + AluY SINE Alu 1 297 -14 1575 161 17 7 chr11 115471332 115471623 -35311930 - L1 LINE L1 -1293 4853 4560 216 0 0 0 chr11 115471818 115471842 -35311711 + (A)n Simple_repeat Simple_repeat 1 24 0 186 133 0 0 chr11 115472537 115472567 -35310986 + (TA)n Simple_repeat Simple_repeat 1 30 0 23 33 0 0 chr11 115472601 115472631 -35310922 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr11 115472767 115472789 -35310764 + AT_rich Low_complexity Low_complexity 1 22 0 191 229 82 16 chr11 115472984 115473045 -35310508 - L2 LINE L2 -3 3269 3205 458 274 0 52 chr11 115473706 115473859 -35309694 - MIR SINE MIR -21 241 97 3667 57 2 2 chr11 115476100 115476571 -35306982 + L1PA5 LINE L1 5679 6149 -5 184 367 0 25 chr11 115477490 115477569 -35305984 + L2 LINE L2 3181 3257 -15 307 226 233 20 chr11 115477663 115477809 -35305744 + MER5B DNA MER1_type 1 177 -1 405 309 154 0 chr11 115477824 115477973 -35305580 - MER5A DNA MER1_type 0 189 18 247 247 55 14 chr11 115477981 115478054 -35305499 + MER81 DNA DNA 39 114 0 573 270 5 46 chr11 115478098 115478239 -35305314 - MER5A DNA MER1_type 0 189 56 1848 134 36 0 chr11 115478239 115478538 -35305015 + AluSx SINE Alu 1 309 0 573 270 5 46 chr11 115478538 115478591 -35304962 - MER5A DNA MER1_type -133 56 2 365 299 125 0 chr11 115478609 115478753 -35304800 - MER5B DNA MER1_type -9 169 8 1136 194 0 28 chr11 115478860 115479071 -35304482 + AluJo SINE Alu 83 287 -25 297 0 0 0 chr11 115479562 115479575 -35303978 + (CA)n Simple_repeat Simple_repeat 1 46 0 297 0 0 0 chr11 115479575 115479608 -35303945 + (CA)n Simple_repeat Simple_repeat 2 34 0 1501 156 11 25 chr11 115479683 115479959 -35303594 + Tigger5 DNA MER2_type 2052 2323 0 1113 320 52 39 chr11 115481193 115481451 -35302102 - L2 LINE L2 0 3313 3060 180 0 0 0 chr11 115481451 115481471 -35302082 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1669 171 0 4 chr11 115481478 115481753 -35301800 - AluJb SINE Alu -36 276 3 1113 320 52 39 chr11 115481753 115482333 -35301220 - L2 LINE L2 -258 3055 2454 1039 259 17 35 chr11 115482364 115482653 -35300900 + L1M4 LINE L1 16 299 -6243 2643 214 14 26 chr11 115482658 115482864 -35300689 + L1MB7 LINE L1 5317 5524 -660 569 64 26 0 chr11 115482864 115482942 -35300611 - MADE1 DNA Mariner 0 80 1 2643 214 14 26 chr11 115482942 115483067 -35300486 + L1MB7 LINE L1 5524 5649 -535 2000 173 3 0 chr11 115483067 115483413 -35300140 + MER7A DNA MER2_type 1 345 -1 2643 214 14 26 chr11 115483413 115483706 -35299847 + L1MB7 LINE L1 5649 5935 -249 21 0 0 0 chr11 115484712 115484733 -35298820 + AT_rich Low_complexity Low_complexity 1 21 0 1587 284 138 11 chr11 115484853 115485396 -35298157 + L1M4 LINE L1 428 1039 -5605 1852 303 42 18 chr11 115485396 115486637 -35296916 - HERVL40 LTR ERVL -1128 4402 3100 889 270 53 17 chr11 115486742 115487042 -35296511 - L1MEc LINE L1 -6048 348 38 402 297 78 64 chr11 115488333 115488707 -35294846 - L1ME4a LINE L1 -86 6035 5657 2263 100 3 0 chr11 115489436 115489735 -35293818 + AluSg SINE Alu 1 300 -10 240 266 109 0 chr11 115489818 115489882 -35293671 + L2 LINE L2 3190 3260 -12 390 118 27 45 chr11 115489947 115490057 -35293496 + CT-rich Low_complexity Low_complexity 1 108 0 981 69 29 23 chr11 115490125 115490299 -35293254 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 1754 106 0 12 chr11 115490299 115490544 -35293009 - AluSq SINE Alu -36 277 36 2539 95 17 0 chr11 115490577 115490926 -35292627 + THE1A LTR MaLR 1 355 0 2110 90 0 0 chr11 115491070 115491374 -35292179 - AluSc SINE Alu 0 316 13 345 102 0 0 chr11 115492759 115492818 -35290735 + (CA)n Simple_repeat Simple_repeat 1 59 0 201 39 0 0 chr11 115493002 115493028 -35290525 + (A)n Simple_repeat Simple_repeat 1 26 0 30 69 0 0 chr11 115493181 115493239 -35290314 + AT_rich Low_complexity Low_complexity 1 58 0 1045 169 18 59 chr11 115493239 115493458 -35290095 - MER2 DNA MER2_type -135 210 1 25 0 0 0 chr11 115493808 115493833 -35289720 + AT_rich Low_complexity Low_complexity 1 25 0 2038 114 0 14 chr11 115493834 115494164 -35289389 - AluSx SINE Alu 0 326 1 188 33 0 33 chr11 115494387 115494417 -35289136 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 444 206 17 39 chr11 115495519 115495699 -35287854 + (TA)n Simple_repeat Simple_repeat 2 177 0 208 291 18 0 chr11 115495730 115495785 -35287768 - L3 LINE CR1 -151 1426 1371 312 70 0 0 chr11 115495916 115495959 -35287594 + (CA)n Simple_repeat Simple_repeat 1 43 0 1037 281 84 25 chr11 115496579 115496946 -35286607 + MER45B DNA AcHobo 329 717 -323 1411 134 14 6 chr11 115496969 115497808 -35285745 + L1PA16 LINE L1 5268 6157 -9 910 147 19 0 chr11 115497990 115498147 -35285406 - L1MD1 LINE L1 -11 6231 6072 301 321 29 36 chr11 115498159 115498296 -35285257 - L1MEc LINE L1 -2629 3586 3451 879 243 39 49 chr11 115498297 115498581 -35284972 + MER65C LTR ERV1 1 281 -180 204 316 130 81 chr11 115498753 115499038 -35284515 + L2 LINE L2 2897 3195 -77 2024 97 73 0 chr11 115500344 115500632 -35282921 + AluSc SINE Alu 1 309 0 21 36 0 0 chr11 115500670 115500698 -35282855 + AT_rich Low_complexity Low_complexity 1 28 0 10217 173 23 15 chr11 115500913 115503625 -35279928 - L1MA5 LINE L1 -6 6294 3558 1504 167 109 0 chr11 115503625 115503901 -35279652 - AluSx SINE Alu -6 306 1 10217 173 23 15 chr11 115503901 115504364 -35279189 - L1MA5 LINE L1 -2742 3558 3100 329 304 26 9 chr11 115504367 115504482 -35279071 - L1ME4a LINE L1 -280 5841 5725 273 319 17 34 chr11 115504959 115505078 -35278475 + MLT2E LTR ERVL 35 151 -477 30 0 0 0 chr11 115505456 115505486 -35278067 + AT_rich Low_complexity Low_complexity 1 30 0 1327 260 88 44 chr11 115505518 115506156 -35277397 - L1MC4 LINE L1 -137 7905 7240 1293 260 127 20 chr11 115506178 115506432 -35277121 - L1MC4 LINE L1 -958 7084 6859 1730 194 12 24 chr11 115506432 115506773 -35276780 - MER1B DNA MER1_type 0 337 1 1293 260 127 20 chr11 115506773 115507076 -35276477 - L1MC4 LINE L1 -1183 6859 6467 3799 251 111 38 chr11 115507562 115507656 -35275897 - L1MEc LINE L1 -4093 2303 2217 1939 127 0 0 chr11 115507656 115507923 -35275630 - AluSx SINE Alu -45 267 1 3799 251 111 38 chr11 115507923 115509763 -35273790 - L1MEc LINE L1 -4179 2217 228 700 344 21 14 chr11 115509865 115510144 -35273409 - L1MEc LINE L1 -6087 309 29 559 346 89 0 chr11 115510847 115511061 -35272492 + MIR SINE MIR 3 235 -27 351 260 125 0 chr11 115512653 115512757 -35270796 - MIR SINE MIR 0 262 146 21 57 0 0 chr11 115512757 115512792 -35270761 + AT_rich Low_complexity Low_complexity 1 35 0 219 365 61 40 chr11 115512792 115512940 -35270613 - MIR SINE MIR -105 157 7 22 0 0 0 chr11 115513111 115513133 -35270420 + AT_rich Low_complexity Low_complexity 1 22 0 334 299 106 30 chr11 115513178 115513573 -35269980 + L1ME4a LINE L1 5656 6080 -41 7214 131 19 1 chr11 115514350 115515479 -35268074 + L1P LINE L1 3796 4944 -1202 2010 129 3 29 chr11 115515479 115515790 -35267763 - AluSx SINE Alu -9 303 1 210 37 0 0 chr11 115517518 115517545 -35266008 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1558 234 159 31 chr11 115517998 115518697 -35264856 - MER99 DNA DNA -1 827 2 21 36 0 0 chr11 115520226 115520254 -35263299 + AT_rich Low_complexity Low_complexity 1 28 0 259 232 18 0 chr11 115520661 115520717 -35262836 + MIR SINE MIR 80 136 -126 37 0 0 0 chr11 115520717 115520754 -35262799 + AT_rich Low_complexity Low_complexity 1 37 0 244 361 42 8 chr11 115520777 115520896 -35262657 + MIR SINE MIR 127 249 -13 582 306 48 0 chr11 115521763 115521949 -35261604 + MIR SINE MIR 60 254 -8 268 279 12 12 chr11 115522326 115522412 -35261141 - MIR3 SINE MIR -1 207 122 1914 166 42 15 chr11 115523853 115524256 -35259297 - L1MA8 LINE L1 -5 6286 5873 187 217 0 132 chr11 115524661 115524767 -35258786 + MIR SINE MIR 131 222 -40 968 220 125 19 chr11 115525005 115525373 -35258180 + LTR37A LTR ERV1 20 426 0 285 252 53 69 chr11 115526064 115526195 -35257358 - MIR SINE MIR -55 207 79 273 29 0 0 chr11 115526454 115526488 -35257065 + (GA)n Simple_repeat Simple_repeat 1 34 0 2917 207 24 8 chr11 115527154 115527748 -35255805 + L1MCa LINE L1 8 610 -5816 2750 188 76 18 chr11 115527780 115528438 -35255115 + L1MC1 LINE L1 482 1386 -5178 * 6528 243 68 40 chr11 115528436 115530086 -35253467 + L1MC1 LINE L1 2998 4601 -2150 3048 192 17 27 chr11 115530086 115530790 -35252763 + L1MB2 LINE L1 5472 6168 -3 6528 243 68 40 chr11 115530790 115531225 -35252328 + L1MC1 LINE L1 4601 5022 -1729 2111 82 7 36 chr11 115531225 115531530 -35252023 + AluY SINE Alu 1 296 -15 6528 243 68 40 chr11 115531530 115532619 -35250934 + L1MC1 LINE L1 5022 6261 -490 2854 119 9 2 chr11 115532629 115533057 -35250496 - L1PA13 LINE L1 -54 6109 5679 * 7831 180 23 4 chr11 115533042 115534542 -35249011 - L1PA13 LINE L1 -1200 4946 3418 208 299 78 13 chr11 115534816 115534893 -35248660 - L2 LINE L2 0 3313 3232 8487 202 67 10 chr11 115535506 115535853 -35247700 + L1MA9 LINE L1 3081 3407 -2813 743 21 32 0 chr11 115535853 115535948 -35247605 + (TTTTC)n Simple_repeat Simple_repeat 2 99 0 8487 202 67 10 chr11 115535948 115537854 -35245699 + L1MA9 LINE L1 3407 5470 -750 363 136 0 0 chr11 115537968 115538027 -35245526 + (TG)n Simple_repeat Simple_repeat 2 60 0 2477 164 26 14 chr11 115538085 115538584 -35244969 + L1MA9 LINE L1 5808 6312 0 299 382 53 16 chr11 115538620 115538866 -35244687 - L2 LINE L2 -798 2516 2262 273 200 0 0 chr11 115539670 115539720 -35243833 - L2 LINE L2 -2 3270 3221 185 0 40 0 chr11 115540468 115540493 -35243060 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 22 56 0 0 chr11 115541132 115541168 -35242385 + AT_rich Low_complexity Low_complexity 1 36 0 252 0 0 0 chr11 115541879 115541907 -35241646 + (CA)n Simple_repeat Simple_repeat 2 29 0 1094 229 79 13 chr11 115542490 115542805 -35240748 - MER44D DNA MER2_type 0 609 4 474 333 51 54 chr11 115543274 115543664 -35239889 - L2 LINE L2 0 3313 2925 361 229 9 95 chr11 115544028 115544133 -35239420 + MER21B LTR ERV1 12 107 -756 2561 229 113 43 chr11 115544212 115544806 -35238747 + MER21B LTR ERV1 19 681 -182 2340 136 19 8 chr11 115544806 115545175 -35238378 - THE1C LTR MaLR -2 373 1 2561 229 113 43 chr11 115545175 115545352 -35238201 + MER21B LTR ERV1 681 844 -19 568 313 125 47 chr11 115547195 115547643 -35235910 - L2 LINE L2 -681 2633 2151 1078 301 45 46 chr11 115547712 115548317 -35235236 + MLT2F LTR ERVL 6 663 0 493 290 51 0 chr11 115548414 115548552 -35235001 + LTR50 LTR ERVL 1 145 -650 413 308 169 44 chr11 115548804 115549194 -35234359 + L1MC/D LINE L1 5377 5815 -1993 653 266 128 39 chr11 115549211 115549493 -35234060 + MLT1J LTR MaLR 5 311 -200 25 51 0 0 chr11 115550645 115550684 -35232869 + AT_rich Low_complexity Low_complexity 1 39 0 2170 120 8 56 chr11 115550872 115551247 -35232306 + THE1B LTR MaLR 1 357 -7 192 97 0 0 chr11 115552183 115552214 -35231339 + (TA)n Simple_repeat Simple_repeat 2 32 0 309 315 189 29 chr11 115552545 115552894 -35230659 + L1MC/D LINE L1 5254 5658 -2150 3134 81 9 0 chr11 115552940 115553359 -35230194 + L1PA8 LINE L1 5735 6157 -15 1055 100 0 6 chr11 115553363 115553523 -35230030 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 306 203 0 0 chr11 115553542 115553606 -35229947 + L1PBa LINE L1 2 65 -6798 1407 103 42 0 chr11 115553606 115553819 -35229734 + L1PB1 LINE L1 5930 6151 0 24 0 0 0 chr11 115554148 115554172 -35229381 + AT_rich Low_complexity Low_complexity 1 24 0 628 306 204 36 chr11 115555962 115556998 -35226555 + L2 LINE L2 1684 2893 -421 351 120 0 0 chr11 115557299 115557349 -35226204 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 557 178 8 0 chr11 115557350 115557468 -35226085 + GA-rich Low_complexity Low_complexity 2 120 0 222 37 0 0 chr11 115557470 115557497 -35226056 + (GGAA)n Simple_repeat Simple_repeat 1 27 0 275 299 114 6 chr11 115557725 115557892 -35225661 + MER5A DNA MER1_type 1 185 -4 699 224 0 0 chr11 115558784 115559011 -35224542 + (CA)n Simple_repeat Simple_repeat 1 227 0 225 94 0 0 chr11 115560327 115560359 -35223194 + (CA)n Simple_repeat Simple_repeat 2 33 0 214 321 178 35 chr11 115561494 115561809 -35221744 - L3 LINE CR1 -2 1575 1216 185 368 0 13 chr11 115561982 115562058 -35221495 - L3 LINE CR1 -312 1265 1191 1511 308 138 28 chr11 115562093 115563185 -35220368 + L2 LINE L2 1446 2658 -656 216 259 7 14 chr11 115563366 115563509 -35220044 + GA-rich Low_complexity Low_complexity 3 144 0 403 351 67 13 chr11 115563857 115564134 -35219419 + L2 LINE L2 2771 3061 -252 719 275 41 18 chr11 115564206 115564424 -35219129 + MER58A DNA MER1_type 2 224 0 699 292 26 38 chr11 115564662 115564929 -35218624 - L2 LINE L2 0 3313 3050 1481 183 26 42 chr11 115564930 115565053 -35218500 + AluSq SINE Alu 1 124 -189 495 0 0 0 chr11 115565053 115565108 -35218445 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 1481 183 26 42 chr11 115565108 115565296 -35218257 + AluSq SINE Alu 124 307 -6 720 268 22 6 chr11 115565743 115565922 -35217631 - MER5A DNA MER1_type -1 188 7 226 286 29 29 chr11 115565929 115565999 -35217554 - MIR3 SINE MIR -49 159 90 910 241 101 93 chr11 115567457 115567885 -35215668 + MLT1H LTR MaLR 117 547 -2 3090 208 31 22 chr11 115568525 115568549 -35215004 - L1MB3 LINE L1 -8 6175 6153 1975 103 16 26 chr11 115568549 115568860 -35214693 + AluY SINE Alu 1 308 -3 3090 208 31 22 chr11 115568860 115569524 -35214029 - L1MB3 LINE L1 -30 6153 5477 189 0 0 0 chr11 115569524 115569545 -35214008 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3090 208 31 22 chr11 115569545 115569596 -35213957 - L1MB3 LINE L1 -706 5477 5428 838 333 41 58 chr11 115569925 115570665 -35212888 + L2 LINE L2 2589 3308 -5 252 59 0 0 chr11 115571281 115571315 -35212238 + (TG)n Simple_repeat Simple_repeat 2 35 0 1566 207 3 0 chr11 115572415 115572715 -35210838 - AluJb SINE Alu -6 306 6 265 266 172 64 chr11 115572912 115573115 -35210438 - L2 LINE L2 0 3313 3089 262 382 25 19 chr11 115574079 115574236 -35209317 - MIR3 SINE MIR -32 176 19 983 205 19 71 chr11 115574271 115574593 -35208960 + L1MA10 LINE L1 6029 6333 -1 384 147 0 0 chr11 115575434 115575509 -35208044 + (CA)n Simple_repeat Simple_repeat 1 75 0 237 204 0 0 chr11 115575646 115575690 -35207863 - Alu SINE Alu -215 87 44 360 0 0 0 chr11 115576909 115576949 -35206604 + (CA)n Simple_repeat Simple_repeat 1 40 0 314 269 40 0 chr11 115578532 115578681 -35204872 - Charlie5 DNA MER1_type 0 2623 2469 * 317 186 0 57 chr11 115578679 115578749 -35204804 - Charlie5 DNA MER1_type -2542 70 5 199 309 43 11 chr11 115579086 115579180 -35204373 - MIR SINE MIR -26 236 140 197 129 89 32 chr11 115579182 115579306 -35204247 + (TTATA)n Simple_repeat Simple_repeat 4 134 0 2076 192 37 0 chr11 115579955 115580418 -35203135 + L1MA8 LINE L1 3990 4469 -1677 1070 196 5 16 chr11 115580429 115580623 -35202930 + AluJo SINE Alu 95 286 -26 4758 180 39 27 chr11 115580646 115581366 -35202187 + L1MA8 LINE L1 4457 5167 -1124 216 0 0 0 chr11 115581366 115581390 -35202163 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1929 135 25 0 chr11 115581393 115581675 -35201878 - AluSx SINE Alu -23 289 1 4758 180 39 27 chr11 115581675 115582772 -35200781 + L1MA8 LINE L1 5168 6279 -12 190 329 112 65 chr11 115582816 115583354 -35200199 + L2 LINE L2 2174 2736 -578 186 260 0 20 chr11 115583687 115583737 -35199816 + L2 LINE L2 3181 3229 -84 234 264 42 14 chr11 115585569 115585641 -35197912 - MIR3 SINE MIR -39 169 96 765 227 0 0 chr11 115588213 115588367 -35195186 - MER46A DNA MER2_type 0 236 83 22466 70 9 2 chr11 115588386 115592239 -35191314 - L1PA6 LINE L1 0 6154 2310 13479 130 14 67 chr11 115592396 115594831 -35188722 - L1PA6 LINE L1 -3825 2321 16 272 208 0 0 chr11 115594831 115594879 -35188674 - MER46A DNA MER2_type -134 102 55 989 222 70 0 chr11 115594886 115595143 -35188410 + L1 LINE L1 3736 4010 -2136 24954 151 12 19 chr11 115595143 115601551 -35182002 + L1PA8A LINE L1 1 6433 -13 2421 67 0 0 chr11 115601569 115601866 -35181687 + AluY SINE Alu 1 297 -14 1057 174 0 47 chr11 115601866 115602079 -35181474 + L1P LINE L1 4001 4203 -1943 435 60 15 30 chr11 115602099 115602166 -35181387 - L1P4 LINE L1 -469 5699 5634 458 216 0 10 chr11 115602177 115602279 -35181274 - L1M4 LINE L1 -2453 3693 3593 3195 18 109 0 chr11 115602280 115602337 -35181216 + L1PA11 LINE L1 5477 5513 -661 2087 122 0 0 chr11 115602337 115602661 -35180892 + AluSx SINE Alu 7 330 0 3195 18 109 0 chr11 115602661 115602731 -35180822 + L1PA11 LINE L1 5513 5557 -617 3195 108 37 14 chr11 115602731 115603249 -35180304 + L1PA11 LINE L1 5645 6174 0 3195 18 109 0 chr11 115603249 115603272 -35180281 + L1PA11 LINE L1 5557 6174 0 7816 177 23 12 chr11 115603283 115605936 -35177617 + L1MA2 LINE L1 3618 6303 -1 3028 182 6 2 chr11 115605952 115606485 -35177068 + L1PA16 LINE L1 5603 6137 -29 182 298 131 0 chr11 115607547 115607631 -35175922 + MIR SINE MIR 68 162 -100 25 31 0 0 chr11 115608059 115608091 -35175462 + AT_rich Low_complexity Low_complexity 1 32 0 263 341 98 23 chr11 115608826 115609040 -35174513 - MIR SINE MIR -2 260 31 3342 197 27 18 chr11 115610316 115611057 -35172496 - L1MB3 LINE L1 -8 6175 5428 912 349 48 28 chr11 115611383 115612098 -35171455 + L2 LINE L2 2575 3300 -13 225 0 0 0 chr11 115612709 115612734 -35170819 + (TC)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chr11 115612733 115612756 -35170797 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 204 97 0 0 chr11 115612895 115612926 -35170627 + (ATTG)n Simple_repeat Simple_repeat 1 31 0 2188 112 0 16 chr11 115613609 115613913 -35169640 - AluSg SINE Alu -11 299 1 198 103 0 0 chr11 115614161 115614190 -35169363 + (TTCTCC)n Simple_repeat Simple_repeat 5 33 0 1566 198 7 7 chr11 115614200 115614498 -35169055 - AluJb SINE Alu -8 304 7 366 246 141 63 chr11 115614668 115614859 -35168694 - L2 LINE L2 0 3313 3108 30 59 0 0 chr11 115615133 115615184 -35168369 + AT_rich Low_complexity Low_complexity 1 51 0 404 266 128 0 chr11 115615852 115616005 -35167548 - MIR SINE MIR -32 176 1 1015 209 15 77 chr11 115616041 115616367 -35167186 + L1MA10 LINE L1 6029 6334 0 327 145 0 0 chr11 115617134 115617203 -35166350 + (CA)n Simple_repeat Simple_repeat 1 69 0 542 172 0 0 chr11 115617332 115617419 -35166134 - AluJ/FLAM SINE Alu -225 87 1 190 403 40 0 chr11 115618536 115618660 -35164893 + L2 LINE L2 2843 2971 -343 197 301 89 57 chr11 115618837 115618960 -35164593 + L2 LINE L2 3175 3301 -12 306 0 0 0 chr11 115619163 115619197 -35164356 + (CA)n Simple_repeat Simple_repeat 2 35 0 384 204 68 7 chr11 115620757 115620904 -35162649 - Charlie5 DNA MER1_type -28 2584 2429 194 379 11 0 chr11 115622368 115622463 -35161090 - L2 LINE L2 0 3272 3177 * 321 373 13 30 chr11 115622460 115622696 -35160857 - L2 LINE L2 -866 2448 2217 369 333 12 58 chr11 115622726 115622897 -35160656 - MIR SINE MIR -87 175 13 212 73 73 0 chr11 115623571 115623612 -35159941 + T-rich Low_complexity Low_complexity 2 45 0 296 282 35 0 chr11 115624547 115624632 -35158921 - MIR SINE MIR -41 221 134 188 355 26 13 chr11 115624887 115624963 -35158590 - MIR SINE MIR -183 79 3 2007 179 60 9 chr11 115625292 115625740 -35157813 + L1MA8 LINE L1 3999 4469 -1677 993 237 0 5 chr11 115625751 115625945 -35157608 + AluJo SINE Alu 95 287 -25 3833 191 37 9 chr11 115625968 115627047 -35156506 + L1MA8 LINE L1 4457 5556 -735 2121 135 0 0 chr11 115627047 115627359 -35156194 + AluSx SINE Alu 1 312 0 198 0 0 0 chr11 115627556 115627578 -35155975 + (A)n Simple_repeat Simple_repeat 1 22 0 1977 191 9 24 chr11 115627580 115628003 -35155550 + L1MA8 LINE L1 5549 5965 -326 301 354 114 34 chr11 115628079 115628638 -35154915 + L2 LINE L2 2163 2766 -548 190 339 0 18 chr11 115628922 115628978 -35154575 + L2 LINE L2 3007 3061 -211 2132 113 0 26 chr11 115629036 115629365 -35154188 - AluSx SINE Alu 0 312 1 184 174 0 87 chr11 115629406 115629452 -35154101 + L2 LINE L2 3179 3220 -93 264 158 53 0 chr11 115629594 115629651 -35153902 + LTR8A LTR ERV1 1 60 -667 19232 99 32 41 chr11 115629651 115632615 -35150938 + HUERS-P1 LTR ERV1 16 2952 -3311 10291 98 1 17 chr11 115632615 115634079 -35149474 + HUERS-P1 LTR ERV1 4823 6263 0 2736 202 16 67 chr11 115634079 115634807 -35148746 + LTR8 LTR ERV1 1 691 0 184 294 189 49 chr11 115634981 115635325 -35148228 - L2 LINE L2 -93 3220 2829 237 270 32 0 chr11 115636363 115636426 -35147127 - MIR3 SINE MIR -48 160 96 6233 212 16 41 chr11 115637554 115639775 -35143778 + L1P3 LINE L1 372 2555 -3906 4018 110 22 9 chr11 115639775 115640402 -35143151 + L1PA10 LINE L1 5532 6168 0 5307 138 106 30 chr11 115640995 115641161 -35142392 - MER4E-int LTR ERV1 -5699 1059 907 6478 119 39 16 chr11 115641161 115642207 -35141346 + MER11C LTR ERVK 1 1070 -1 5307 138 106 30 chr11 115642207 115643024 -35140529 - MER4E-int LTR ERV1 -5851 907 1 4839 136 20 7 chr11 115643024 115643769 -35139784 - MER4E LTR ERV1 0 779 25 235 380 55 30 chr11 115644859 115645096 -35138457 + L3 LINE CR1 566 808 -769 351 320 27 27 chr11 115645358 115645508 -35138045 + L3 LINE CR1 867 1016 -561 1966 126 3 23 chr11 115645757 115646059 -35137494 + AluSq SINE Alu 1 296 -17 1642 210 3 13 chr11 115646183 115646493 -35137060 + AluJo SINE Alu 1 307 -5 21 0 0 0 chr11 115646569 115646590 -35136963 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 115646599 115646620 -35136933 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 115646726 115646747 -35136806 + (A)n Simple_repeat Simple_repeat 1 21 0 500 315 78 78 chr11 115647121 115647505 -35136048 + MLT1J2 LTR MaLR 1 384 -66 211 364 40 0 chr11 115647662 115647761 -35135792 + L2 LINE L2 3196 3298 -15 186 71 0 0 chr11 115649465 115649493 -35134060 + (TAA)n Simple_repeat Simple_repeat 2 29 0 427 359 130 14 chr11 115649526 115649871 -35133682 + L2 LINE L2 2589 2973 -341 231 376 30 8 chr11 115650565 115650698 -35132855 - L2 LINE L2 -913 2401 2266 302 340 52 31 chr11 115652534 115652725 -35130828 - MLT1I LTR MaLR -172 237 43 320 339 46 0 chr11 115652726 115652835 -35130718 - MIR SINE MIR -92 170 57 1872 207 3 8 chr11 115652929 115653296 -35130257 + MLT1A1 LTR MaLR 1 365 0 8956 204 46 27 chr11 115654342 115657363 -35126190 + L1MA2 LINE L1 123 3541 -4024 6058 167 12 35 chr11 115657352 115659540 -35124013 + L1MA2 LINE L1 5567 7723 0 * 21 0 0 0 chr11 115659843 115659864 -35123689 + AT_rich Low_complexity Low_complexity 1 21 0 747 293 46 39 chr11 115661040 115661450 -35122103 + MLT1H LTR MaLR 132 544 -5 365 340 39 35 chr11 115661649 115661905 -35121648 - HAL1 LINE L1 -6 2501 2245 3308 194 23 15 chr11 115662122 115662860 -35120693 - L1MB3 LINE L1 -3 6180 5437 569 359 48 28 chr11 115663213 115663698 -35119855 + L2 LINE L2 2563 3054 -259 2089 142 18 9 chr11 115663762 115664094 -35119459 + MER61A LTR ERV1 1 335 -8 215 217 0 0 chr11 115664218 115664264 -35119289 + GA-rich Low_complexity Low_complexity 1 46 0 411 250 168 53 chr11 115665444 115665652 -35117901 - L2 LINE L2 0 3313 3082 180 77 0 0 chr11 115666364 115666390 -35117163 + (TTTTTG)n Simple_repeat Simple_repeat 1 26 0 207 342 53 0 chr11 115666601 115666677 -35116876 - MIR3 SINE MIR -31 177 98 1023 216 32 63 chr11 115666787 115667102 -35116451 + L1MA10 LINE L1 6028 6332 -2 2844 111 23 9 chr11 115667873 115668307 -35115246 - L1PA8 LINE L1 0 6172 5733 192 182 0 0 chr11 115668404 115668448 -35115105 + (CA)n Simple_repeat Simple_repeat 1 44 0 245 346 55 69 chr11 115669759 115670195 -35113358 + L2 LINE L2 2872 3301 -12 2039 102 31 7 chr11 115670212 115670506 -35113047 + AluSc SINE Alu 1 301 -8 195 42 0 0 chr11 115670725 115670749 -35112804 + (CA)n Simple_repeat Simple_repeat 2 25 0 1353 217 3 14 chr11 115671742 115672028 -35111525 + AluJo SINE Alu 6 288 -24 473 135 127 8 chr11 115672610 115672736 -35110817 - Charlie5 DNA MER1_type -42 2570 2430 26 64 0 0 chr11 115673425 115673472 -35110081 + AT_rich Low_complexity Low_complexity 1 47 0 30 27 0 0 chr11 115673857 115673894 -35109659 + AT_rich Low_complexity Low_complexity 1 37 0 399 89 0 0 chr11 115674164 115674220 -35109333 + (TG)n Simple_repeat Simple_repeat 2 57 0 236 358 11 0 chr11 115675151 115675246 -35108307 - L2 LINE L2 0 3272 3177 342 391 0 25 chr11 115675278 115675480 -35108073 - L2 LINE L2 -901 2413 2217 241 370 7 58 chr11 115675510 115675648 -35107905 - MIR SINE MIR -87 175 45 316 343 21 50 chr11 115676962 115677204 -35106349 - L2 LINE L2 -866 2448 2214 375 331 28 55 chr11 115677221 115677402 -35106151 - MIR SINE MIR -74 188 13 1032 156 0 0 chr11 115678538 115678551 -35105002 + (TA)n Simple_repeat Simple_repeat 1 193 0 1032 156 0 0 chr11 115678551 115678731 -35104822 + (TA)n Simple_repeat Simple_repeat 1 180 0 329 209 23 45 chr11 115679171 115679348 -35104205 + (TTA)n Simple_repeat Simple_repeat 3 175 0 203 340 30 0 chr11 115679367 115679467 -35104086 - MIR SINE MIR -26 236 134 5538 191 50 19 chr11 115680130 115682365 -35101188 + L1MA8 LINE L1 3990 6288 -3 21 0 0 0 chr11 115682365 115682386 -35101167 + AT_rich Low_complexity Low_complexity 1 21 0 337 351 98 41 chr11 115682412 115682945 -35100608 + L2 LINE L2 2174 2736 -578 289 390 80 21 chr11 115683499 115683873 -35099680 - L2 LINE L2 -4 3268 2873 21 0 0 0 chr11 115684573 115684594 -35098959 + AT_rich Low_complexity Low_complexity 1 21 0 42876 32 22 1 chr11 115685116 115691144 -35092409 + L1PA3 LINE L1 1 6155 0 196 336 87 19 chr11 115691207 115691311 -35092242 - MIR3 SINE MIR -48 160 50 3130 182 10 3 chr11 115692409 115693001 -35090552 - L1PA16 LINE L1 -2 6164 5569 850 193 0 41 chr11 115693002 115693220 -35090333 + L1 LINE L1 4705 4913 -1233 27 0 0 0 chr11 115694169 115694196 -35089357 + AT_rich Low_complexity Low_complexity 1 27 0 1160 208 4 0 chr11 115694735 115694966 -35088587 - MER46A DNA MER2_type -4 232 1 22 35 0 0 chr11 115696320 115696349 -35087204 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr11 115697185 115697207 -35086346 + AT_rich Low_complexity Low_complexity 1 22 0 25 75 0 0 chr11 115697301 115697354 -35086199 + AT_rich Low_complexity Low_complexity 1 53 0 444 332 120 5 chr11 115699559 115699767 -35083786 + MIR SINE MIR 20 251 -11 24 77 0 0 chr11 115700510 115700562 -35082991 + AT_rich Low_complexity Low_complexity 1 52 0 425 304 61 22 chr11 115700719 115700900 -35082653 + L3 LINE CR1 829 1016 -561 26 50 0 0 chr11 115700932 115700972 -35082581 + AT_rich Low_complexity Low_complexity 1 40 0 404 356 84 17 chr11 115701363 115701708 -35081845 - L2 LINE L2 -733 2581 2214 1396 228 3 7 chr11 115704426 115704733 -35078820 - AluJo SINE Alu -2 310 5 484 306 100 9 chr11 115704769 115704998 -35078555 + MIR SINE MIR 12 261 -1 301 284 198 9 chr11 115705102 115705218 -35078335 - L2 LINE L2 -2 3270 3133 2054 152 22 19 chr11 115705226 115705589 -35077964 + THE1B LTR MaLR 1 364 0 9588 124 31 38 chr11 115705589 115707181 -35076372 + THE1B-int LTR MaLR 1 1580 0 2403 119 19 14 chr11 115707181 115707543 -35076010 + THE1B LTR MaLR 1 364 0 1763 127 81 3 chr11 115708000 115708284 -35075269 - AluSg SINE Alu -4 306 1 1080 267 35 42 chr11 115708662 115709093 -35074460 + L1ME2 LINE L1 5722 6149 -15 297 355 71 7 chr11 115709702 115709843 -35073710 + MIR SINE MIR 23 172 -90 341 310 42 21 chr11 115711185 115711327 -35072226 + L3 LINE CR1 872 1016 -561 21 0 0 0 chr11 115711359 115711380 -35072173 + AT_rich Low_complexity Low_complexity 1 21 0 406 389 36 12 chr11 115711821 115712150 -35071403 - L2 LINE L2 -782 2532 2196 1472 221 0 3 chr11 115714620 115714914 -35068639 - AluJb SINE Alu -7 305 13 419 270 117 45 chr11 115714953 115715175 -35068378 + MIR SINE MIR 1 238 -24 1046 265 45 42 chr11 115716297 115716724 -35066829 + L1ME2 LINE L1 5722 6149 -15 330 345 63 7 chr11 115717358 115717500 -35066053 + MIR SINE MIR 23 172 -90 183 333 0 0 chr11 115718008 115718065 -35065488 - MIR SINE MIR -16 246 190 685 311 64 64 chr11 115718604 115718919 -35064634 + L1MEd LINE L1 709 1026 -5093 12415 181 26 43 chr11 115718919 115718983 -35064570 - Tigger2 DNA MER2_type 0 2718 2654 2256 98 0 0 chr11 115718983 115719290 -35064263 + AluY SINE Alu 1 307 -4 12415 181 26 43 chr11 115719290 115721986 -35061567 - Tigger2 DNA MER2_type -64 2654 4 685 311 64 64 chr11 115721986 115722219 -35061334 + L1MEd LINE L1 1025 1257 -4862 343 227 11 34 chr11 115722242 115722264 -35061289 - MIR SINE MIR -86 176 155 834 268 59 41 chr11 115722264 115722723 -35060830 + MLT1C LTR MaLR 1 467 0 343 227 11 34 chr11 115722723 115722788 -35060765 - MIR SINE MIR -107 155 91 32 26 0 0 chr11 115723195 115723234 -35060319 + AT_rich Low_complexity Low_complexity 1 39 0 249 320 55 31 chr11 115723996 115724124 -35059429 + LTR16C LTR ERVL 316 446 -45 180 234 0 0 chr11 115724163 115724210 -35059343 + (CAT)n Simple_repeat Simple_repeat 3 49 0 21 57 0 0 chr11 115724882 115724917 -35058636 + AT_rich Low_complexity Low_complexity 1 35 0 1344 222 4 0 chr11 115725250 115725520 -35058033 + AluJo SINE Alu 6 276 -36 335 213 140 0 chr11 115726123 115726259 -35057294 - Charlie5 DNA MER1_type 0 2623 2469 251 171 0 0 chr11 115726261 115726302 -35057251 - Charlie5 DNA MER1_type -2546 66 26 222 105 0 0 chr11 115727309 115727347 -35056206 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 279 130 0 0 chr11 115727354 115727408 -35056145 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 23 33 0 0 chr11 115727482 115727512 -35056041 + AT_rich Low_complexity Low_complexity 1 30 0 235 92 77 0 chr11 115727794 115727859 -35055694 + (TA)n Simple_repeat Simple_repeat 2 71 0 200 277 0 0 chr11 115728514 115728561 -35054992 - L2 LINE L2 0 3313 3267 379 343 15 34 chr11 115728641 115728845 -35054708 - L2 LINE L2 -901 2413 2214 3055 180 8 8 chr11 115729615 115730215 -35053338 - L1PA16 LINE L1 0 6166 5567 737 224 19 29 chr11 115730215 115730425 -35053128 + L1P LINE L1 4706 4913 -1233 26 30 0 0 chr11 115731412 115731445 -35052108 + AT_rich Low_complexity Low_complexity 1 33 0 978 244 4 4 chr11 115731824 115732058 -35051495 - MER46A DNA MER2_type -2 234 1 222 218 0 0 chr11 115735287 115735342 -35048211 + A-rich Low_complexity Low_complexity 1 55 0 334 361 0 0 chr11 115735961 115736080 -35047473 + MIR SINE MIR 24 142 -120 332 341 59 7 chr11 115737123 115737258 -35046295 + L3 LINE CR1 844 985 -592 397 364 41 25 chr11 115737786 115738102 -35045451 - L2 LINE L2 -782 2532 2212 30 0 0 0 chr11 115738599 115738629 -35044924 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 115740463 115740492 -35043061 + AT_rich Low_complexity Low_complexity 1 29 0 1331 226 7 3 chr11 115740858 115741146 -35042407 - AluJo SINE Alu -19 293 5 536 311 110 4 chr11 115741180 115741408 -35042145 + MIR SINE MIR 10 261 -1 254 267 198 9 chr11 115741509 115741625 -35041928 - L2 LINE L2 -2 3270 3133 818 258 40 40 chr11 115742503 115742825 -35040728 + L1ME2 LINE L1 5722 6043 -121 729 257 40 33 chr11 115743204 115743476 -35040077 + L1ME2 LINE L1 5722 5995 -169 5422 91 14 35 chr11 115743476 115744281 -35039272 + HUERS-P1 LTR ERV1 2165 2952 -3311 9382 109 3 41 chr11 115744281 115745779 -35037774 + HUERS-P1 LTR ERV1 4823 6263 0 2818 192 19 70 chr11 115745779 115746507 -35037046 + LTR8 LTR ERV1 1 691 0 1933 225 56 8 chr11 115746738 115747235 -35036318 + L1PA11 LINE L1 4402 4922 -1224 * 3122 153 19 162 chr11 115747234 115747611 -35035942 + L1PA11 LINE L1 5209 5638 -536 2837 124 9 0 chr11 115747611 115748047 -35035506 - L1PA10 LINE L1 -16 6152 5713 3122 153 19 162 chr11 115748047 115748796 -35034757 + L1PA11 LINE L1 5638 6173 -1 7830 188 22 16 chr11 115748808 115750619 -35032934 + L1MA3 LINE L1 3609 5433 -743 536 187 8 8 chr11 115750616 115750739 -35032814 + L1MA3 LINE L1 5919 6041 -264 * 905 215 28 0 chr11 115750760 115750974 -35032579 + L1PA16 LINE L1 5938 6157 -9 1062 226 0 0 chr11 115752876 115753093 -35030460 - MER46A DNA MER2_type -4 232 16 25 0 0 0 chr11 115754411 115754436 -35029117 + AT_rich Low_complexity Low_complexity 1 25 0 202 227 0 0 chr11 115754987 115755031 -35028522 + A-rich Low_complexity Low_complexity 1 44 0 9131 237 47 14 chr11 115755143 115758885 -35024668 + L1M2a LINE L1 136 4005 -3162 603 246 131 11 chr11 115758900 115759075 -35024478 + AluJo SINE Alu 96 291 -21 3685 218 26 17 chr11 115759076 115760071 -35023482 + L1M2a LINE L1 4055 5058 -2109 465 350 115 0 chr11 115760801 115761001 -35022552 + MIR SINE MIR 24 246 -16 213 394 37 19 chr11 115761519 115761735 -35021818 + L3 LINE CR1 591 810 -767 426 286 75 19 chr11 115761955 115762116 -35021437 + L3 LINE CR1 844 1013 -564 386 333 57 28 chr11 115762633 115762915 -35020638 - L2 LINE L2 -782 2532 2243 1316 229 7 3 chr11 115765694 115765982 -35017571 - AluJo SINE Alu -19 293 5 536 311 110 4 chr11 115766016 115766244 -35017309 + MIR SINE MIR 10 261 -1 254 267 198 9 chr11 115766345 115766461 -35017092 - L2 LINE L2 -2 3270 3133 876 276 44 51 chr11 115767351 115767782 -35015771 + L1ME2 LINE L1 5722 6149 -15 8934 150 40 24 chr11 115767837 115769319 -35014234 + HUERS-P1 LTR ERV1 1446 2952 -3311 9760 102 4 25 chr11 115769319 115770791 -35012762 + HUERS-P1 LTR ERV1 4823 6263 0 2775 196 18 69 chr11 115770791 115771519 -35012034 + LTR8 LTR ERV1 1 691 0 2091 117 0 7 chr11 115771634 115771925 -35011628 - AluSq SINE Alu -24 289 1 26 30 0 0 chr11 115772583 115772616 -35010937 + AT_rich Low_complexity Low_complexity 1 33 0 198 318 32 0 chr11 115773386 115773449 -35010104 - MIR3 SINE MIR -48 160 96 7386 211 21 45 chr11 115774878 115777470 -35006083 + L1PA11 LINE L1 10 2549 -3912 4257 103 9 12 chr11 115777470 115778109 -35005444 + L1PA10 LINE L1 5532 6168 0 996 206 5 5 chr11 115779221 115779410 -35004143 - MER46A DNA MER2_type -2 234 46 3261 230 162 10 chr11 115779411 115780440 -35003113 + L1PA11 LINE L1 4052 5237 -1224 3122 153 19 162 chr11 115780439 115780816 -35002737 + L1PA11 LINE L1 5524 5953 -536 * 2807 124 9 2 chr11 115780816 115781253 -35002300 - L1PA10 LINE L1 -16 6152 5713 3122 153 19 162 chr11 115781253 115782002 -35001551 + L1PA11 LINE L1 5953 6488 -1 7713 194 27 15 chr11 115782014 115783811 -34999742 + L1MA3 LINE L1 3609 5430 -743 640 176 0 8 chr11 115783810 115783941 -34999612 + L1MA3 LINE L1 5919 6048 -257 * 1050 188 9 0 chr11 115783952 115784170 -34999383 + L1PA16 LINE L1 5938 6157 -9 1128 217 0 0 chr11 115786093 115786323 -34997230 - MER46A DNA MER2_type -4 232 3 21 36 0 0 chr11 115788668 115788696 -34994857 + AT_rich Low_complexity Low_complexity 1 28 0 4496 190 23 21 chr11 115790953 115792146 -34991407 + L1MA3 LINE L1 4236 5433 -743 536 187 8 8 chr11 115792143 115792266 -34991287 + L1MA3 LINE L1 5919 6041 -264 * 905 215 28 0 chr11 115792287 115792501 -34991052 + L1PA16 LINE L1 5938 6157 -9 1780 164 27 24 chr11 115792914 115793250 -34990303 - THE1C LTR MaLR -38 337 1 9115 130 18 65 chr11 115793250 115794907 -34988646 - THE1C-int LTR MaLR 0 1580 1 689 141 42 42 chr11 115794907 115795049 -34988504 - THE1C LTR MaLR 0 375 234 489 256 63 0 chr11 115795067 115795216 -34988337 - L1ME LINE L1 -635 5535 5376 23 33 0 0 chr11 115795286 115795316 -34988237 + AT_rich Low_complexity Low_complexity 1 30 0 2089 43 8 0 chr11 115795915 115796173 -34987380 - L1PA5 LINE L1 -7 6147 5888 269 336 106 34 chr11 115796175 115796383 -34987170 + MLT1J2 LTR MaLR 175 397 -53 230 415 0 0 chr11 115796481 115796599 -34986954 + L2 LINE L2 3196 3313 0 874 113 0 0 chr11 115796613 115796750 -34986803 + AluSc SINE Alu 166 302 0 437 331 78 7 chr11 115796873 115797166 -34986387 - L2 LINE L2 -816 2498 2185 313 250 5 156 chr11 115798029 115798122 -34985431 - L2 LINE L2 -10 3303 3198 1880 99 28 0 chr11 115798122 115798374 -34985179 + AluSq SINE Alu 21 279 -34 231 36 0 0 chr11 115798375 115798403 -34985150 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 313 250 5 156 chr11 115798403 115798519 -34985034 - L2 LINE L2 -114 3199 3124 206 227 301 49 chr11 115798581 115798744 -34984809 + MIR SINE MIR 59 262 0 387 238 99 20 chr11 115799723 115799874 -34983679 - MIR SINE MIR -34 228 66 2049 130 21 35 chr11 115799960 115800299 -34983254 - THE1B LTR MaLR -30 334 1 3641 181 20 8 chr11 115803465 115804195 -34979358 - L1MB3 LINE L1 0 6183 5445 568 311 123 5 chr11 115804347 115804566 -34978987 + MIR SINE MIR 1 245 -17 441 274 65 38 chr11 115804624 115804810 -34978743 - L2 LINE L2 -8 3305 3115 21 36 0 0 chr11 115805892 115805920 -34977633 + AT_rich Low_complexity Low_complexity 1 28 0 190 310 91 53 chr11 115806271 115806458 -34977095 + MIR SINE MIR 39 232 -30 180 259 35 35 chr11 115807047 115807105 -34976448 - MIR SINE MIR -62 146 89 890 199 77 14 chr11 115807275 115807496 -34976057 - L1PA16 LINE L1 -4 6162 5928 2356 194 71 4 chr11 115807537 115807717 -34975836 + L1PB4 LINE L1 5584 5750 -406 360 0 0 0 chr11 115807717 115807757 -34975796 + (TA)n Simple_repeat Simple_repeat 2 41 0 2356 194 71 4 chr11 115807757 115808111 -34975442 + L1PB4 LINE L1 5750 6154 -2 22 0 0 0 chr11 115808111 115808133 -34975420 + AT_rich Low_complexity Low_complexity 1 22 0 496 256 93 49 chr11 115808778 115809024 -34974529 - L1ME2 LINE L1 -9 6155 5899 715 256 122 0 chr11 115809037 115809275 -34974278 - L1MEc LINE L1 -6095 301 35 2110 126 3 3 chr11 115809709 115810018 -34973535 + AluSx SINE Alu 1 309 -3 215 250 65 65 chr11 115810018 115810110 -34973443 + L2 LINE L2 3172 3263 -9 31 0 0 0 chr11 115811128 115811159 -34972394 + AT_rich Low_complexity Low_complexity 1 31 0 788 271 21 0 chr11 115811340 115811532 -34972021 - MIR SINE MIR -66 196 1 388 301 40 23 chr11 115812132 115812305 -34971248 - MIR SINE MIR -11 251 76 258 302 81 20 chr11 115812475 115812624 -34970929 + L2 LINE L2 3119 3276 -37 208 328 15 52 chr11 115812841 115812975 -34970578 - L2 LINE L2 -1 3312 3184 342 302 58 37 chr11 115813180 115813369 -34970184 - L2 LINE L2 -1 3312 3120 2033 207 82 7 chr11 115813389 115813853 -34969700 - MLT1D LTR MaLR -4 501 3 813 269 72 11 chr11 115814317 115814650 -34968903 + L1MC4 LINE L1 6611 7002 -847 314 293 26 60 chr11 115814795 115815027 -34968526 + L1MC5 LINE L1 7010 7233 -728 265 242 48 10 chr11 115815104 115815226 -34968327 + L1MC4a LINE L1 7261 7415 -393 618 130 0 0 chr11 115815230 115815322 -34968231 + AluS SINE Alu 1 92 -221 2580 153 79 11 chr11 115815328 115815797 -34967756 + Tigger3(Golem) DNA MER2_type 2527 3027 -2 271 263 32 0 chr11 115815798 115815893 -34967660 + L1MC3 LINE L1 7015 7112 -673 * 842 207 113 0 chr11 115815892 115816095 -34967458 + L1MD3 LINE L1 7532 7757 -238 23 0 0 0 chr11 115816364 115816387 -34967166 + AT_rich Low_complexity Low_complexity 1 23 0 2360 66 3 7 chr11 115817068 115817371 -34966182 + AluY SINE Alu 1 302 -9 186 43 0 0 chr11 115817411 115817434 -34966119 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 999 85 0 0 chr11 115817535 115817664 -34965889 - AluSg/x SINE Alu -42 268 140 21 0 0 0 chr11 115818132 115818153 -34965400 + AT_rich Low_complexity Low_complexity 1 21 0 1506 121 5 0 chr11 115818661 115818867 -34964686 - AluSx SINE Alu -99 213 7 22 56 0 0 chr11 115820039 115820075 -34963478 + AT_rich Low_complexity Low_complexity 1 36 0 762 201 24 24 chr11 115820240 115820409 -34963144 - FRAM SINE Alu -7 169 1 263 333 109 6 chr11 115820432 115820606 -34962947 - L3 LINE CR1 -219 1358 1167 22 0 0 0 chr11 115821049 115821071 -34962482 + AT_rich Low_complexity Low_complexity 1 22 0 237 310 39 23 chr11 115821302 115821431 -34962122 - MLT1J2 LTR MaLR -42 408 278 * 509 300 59 59 chr11 115821430 115821737 -34961816 - MLT1J LTR MaLR -204 307 1 21 0 0 0 chr11 115822268 115822289 -34961264 + AT_rich Low_complexity Low_complexity 1 21 0 2241 165 10 5 chr11 115822301 115822702 -34960851 - L1PA16 LINE L1 0 6166 5764 600 312 18 18 chr11 115823503 115823673 -34959880 - MLT1I LTR MaLR -129 280 111 582 312 50 23 chr11 115823849 115824070 -34959483 - MIR SINE MIR -18 244 18 1738 127 0 4 chr11 115825009 115825443 -34958110 + AluSx SINE Alu 46 478 0 1295 55 6 11 chr11 115825262 115825517 -34958036 + (GAAA)n Simple_repeat Simple_repeat 1 254 0 816 151 96 0 chr11 115828260 115828406 -34955147 - FRAM SINE Alu -17 159 1 2164 139 0 0 chr11 115828449 115828752 -34954801 - AluSq SINE Alu -10 303 1 213 121 0 0 chr11 115828855 115828888 -34954665 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 326 322 0 0 chr11 115828888 115828978 -34954575 + L1MC4 LINE L1 6614 6703 -1339 * 380 309 43 7 chr11 115828898 115829037 -34954516 - L1MC4 LINE L1 -1339 6703 6560 211 161 16 48 chr11 115830318 115830380 -34953173 + (TATAA)n Simple_repeat Simple_repeat 4 63 0 189 238 24 0 chr11 115831491 115831533 -34952020 + L2 LINE L2 3268 3310 -3 1996 109 7 0 chr11 115832276 115832552 -34951001 - AluSq SINE Alu -3 310 33 2421 119 0 8 chr11 115832652 115833022 -34950531 - L1PB1 LINE L1 0 6151 5785 250 185 12 37 chr11 115833023 115833104 -34950449 + (TA)n Simple_repeat Simple_repeat 2 80 0 3429 110 13 8 chr11 115833108 115833637 -34949916 - L1PB1 LINE L1 -360 5791 5260 22 0 0 0 chr11 115833729 115833751 -34949802 + AT_rich Low_complexity Low_complexity 1 22 0 4976 166 19 3 chr11 115833905 115835029 -34948524 - L1PA16 LINE L1 -5 6161 5023 403 62 16 16 chr11 115835061 115835125 -34948428 + (GA)n Simple_repeat Simple_repeat 1 64 0 25 0 0 0 chr11 115835288 115835313 -34948240 + AT_rich Low_complexity Low_complexity 1 25 0 226 70 0 47 chr11 115835370 115835413 -34948140 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 3147 233 70 42 chr11 115835467 115836620 -34946933 - L1M4 LINE L1 -840 5306 4121 41 21 0 0 chr11 115837040 115837088 -34946465 + AT_rich Low_complexity Low_complexity 1 48 0 2123 176 20 26 chr11 115837169 115837628 -34945925 + L1MC1 LINE L1 5874 6329 -4 23 33 0 0 chr11 115837689 115837719 -34945834 + AT_rich Low_complexity Low_complexity 1 30 0 717 238 136 47 chr11 115838641 115839002 -34944551 - L1MD2 LINE L1 -5 6354 5962 1947 234 39 74 chr11 115839040 115839621 -34943932 - L1MD2 LINE L1 -712 5647 5047 1586 147 15 38 chr11 115839621 115839925 -34943628 - AluSg SINE Alu 0 319 22 1947 234 39 74 chr11 115839925 115840046 -34943507 - L1MD2 LINE L1 -1312 5047 4923 267 114 0 0 chr11 115840046 115840090 -34943463 + (TATG)n Simple_repeat Simple_repeat 1 44 0 1947 234 39 74 chr11 115840090 115840731 -34942822 - L1MD2 LINE L1 -1436 4923 4356 1730 170 128 10 chr11 115840747 115841130 -34942423 - MSTA LTR MaLR 0 428 1 22 35 0 0 chr11 115841549 115841578 -34941975 + AT_rich Low_complexity Low_complexity 1 29 0 2499 46 0 7 chr11 115841633 115841938 -34941615 + AluY SINE Alu 1 303 -8 25 75 0 0 chr11 115842325 115842378 -34941175 + AT_rich Low_complexity Low_complexity 1 53 0 29 0 0 0 chr11 115842610 115842639 -34940914 + AT_rich Low_complexity Low_complexity 1 29 0 326 336 30 82 chr11 115843982 115844169 -34939384 - MIR SINE MIR -30 232 58 2726 13 0 0 chr11 115844169 115844476 -34939077 + AluYa5 SINE Alu 1 307 -4 326 336 30 82 chr11 115844476 115844520 -34939033 - MIR SINE MIR -204 58 13 27 29 0 0 chr11 115844835 115844869 -34938684 + AT_rich Low_complexity Low_complexity 1 34 0 216 226 75 0 chr11 115846286 115846339 -34937214 + L2 LINE L2 3256 3312 -1 443 220 17 51 chr11 115847073 115847191 -34936362 + MLT1C LTR MaLR 12 125 -380 824 240 77 20 chr11 115847227 115847473 -34936080 + MLT1C LTR MaLR 206 465 -2 234 0 0 0 chr11 115847610 115847636 -34935917 + (CA)n Simple_repeat Simple_repeat 2 27 0 2086 110 3 7 chr11 115848144 115848465 -34935088 + AluSg1 SINE Alu 1 309 0 197 377 0 13 chr11 115849041 115849118 -34934435 - MIR3 SINE MIR -32 176 101 429 162 0 0 chr11 115849369 115849437 -34934116 + L1PA15-16 LINE L1 2083 2150 -4699 1211 119 238 0 chr11 115849460 115849662 -34933891 - AluSq SINE Alu -63 250 1 7016 272 31 34 chr11 115849664 115851774 -34931779 + L1PA15-16 LINE L1 2138 4241 -2608 1591 171 33 4 chr11 115851774 115852072 -34931481 - AluSx SINE Alu 0 306 1 7016 272 31 34 chr11 115852072 115852574 -34930979 + L1PA15-16 LINE L1 4241 4743 -2106 511 126 74 0 chr11 115852580 115852675 -34930878 + L1PA16 LINE L1 6061 6162 -4 233 321 136 34 chr11 115853306 115853689 -34929864 - L2 LINE L2 -1026 2288 1867 1763 290 134 57 chr11 115853738 115854412 -34929141 + HAL1 LINE L1 10 630 -1877 346 172 0 23 chr11 115854412 115854499 -34929054 + L1PA13 LINE L1 6078 6162 -1 1763 290 134 57 chr11 115854499 115854941 -34928612 + HAL1 LINE L1 630 1036 -1471 180 0 0 0 chr11 115854941 115854961 -34928592 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1763 290 134 57 chr11 115854961 115855609 -34927944 + HAL1 LINE L1 1036 1912 -595 279 290 14 43 chr11 115855689 115855827 -34927726 + HAL1 LINE L1 2212 2345 -162 389 331 0 0 chr11 115856152 115856288 -34927265 + MLT1J LTR MaLR 4 139 -372 911 239 80 74 chr11 115856315 115856713 -34926840 + MLT2B1 LTR ERVL 1 400 -64 243 0 0 0 chr11 115856718 115856745 -34926808 + (TG)n Simple_repeat Simple_repeat 2 28 0 298 186 58 32 chr11 115856745 115856963 -34926590 + (TATAA)n Simple_repeat Simple_repeat 1 223 0 2114 112 3 19 chr11 115857023 115857337 -34926216 + AluSc SINE Alu 1 309 0 33 43 0 0 chr11 115857506 115857553 -34926000 + AT_rich Low_complexity Low_complexity 1 47 0 2017 252 59 21 chr11 115858381 115859054 -34924499 + L1MC4 LINE L1 6895 7656 -386 1964 155 36 28 chr11 115859054 115859415 -34924138 - THE1B LTR MaLR 0 364 1 2017 252 59 21 chr11 115859415 115859626 -34923927 + L1MC4 LINE L1 7656 7857 -185 369 335 86 30 chr11 115859929 115860162 -34923391 + MIR SINE MIR 5 250 -12 28 48 0 0 chr11 115861468 115861510 -34922043 + AT_rich Low_complexity Low_complexity 1 42 0 2219 108 0 0 chr11 115862103 115862410 -34921143 + AluSg SINE Alu 1 307 -3 3083 92 24 19 chr11 115862634 115862962 -34920591 - L1PA14 LINE L1 -1 6160 5828 1899 110 11 0 chr11 115862962 115863226 -34920327 - AluSc SINE Alu -42 267 1 3083 92 24 19 chr11 115863226 115863362 -34920191 - L1PA14 LINE L1 -333 5828 5694 333 71 0 11 chr11 115863365 115863420 -34920133 + L1PA14 LINE L1 5626 5664 -497 217 325 108 0 chr11 115863536 115863619 -34919934 - MIR SINE MIR -163 99 8 268 314 11 30 chr11 115863697 115863798 -34919755 + MIR SINE MIR 51 150 -58 486 0 0 0 chr11 115863798 115863852 -34919701 + (TA)n Simple_repeat Simple_repeat 1 54 0 180 158 0 0 chr11 115863852 115863890 -34919663 + (CA)n Simple_repeat Simple_repeat 1 38 0 268 311 11 29 chr11 115864548 115864650 -34918903 + MIR SINE MIR 51 151 -57 531 132 0 0 chr11 115864650 115864741 -34918812 + (TA)n Simple_repeat Simple_repeat 2 92 0 21 0 0 0 chr11 115864778 115864799 -34918754 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 115865781 115865803 -34917750 + AT_rich Low_complexity Low_complexity 1 22 0 337 224 37 103 chr11 115866353 115866460 -34917093 - MIR3 SINE MIR -34 174 75 21 0 0 0 chr11 115866465 115866486 -34917067 + AT_rich Low_complexity Low_complexity 1 21 0 371 236 66 9 chr11 115868027 115868133 -34915420 - MLT1I LTR MaLR -1 408 297 24 32 0 0 chr11 115869222 115869253 -34914300 + AT_rich Low_complexity Low_complexity 1 31 0 2483 65 0 0 chr11 115869295 115869605 -34913948 - AluY SINE Alu -1 310 1 21 0 0 0 chr11 115869895 115869916 -34913637 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 115870086 115870114 -34913439 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr11 115870695 115870726 -34912827 + AT_rich Low_complexity Low_complexity 1 31 0 218 31 0 31 chr11 115870935 115870967 -34912586 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 402 333 84 55 chr11 115870967 115871444 -34912109 - MLT1K LTR MaLR -55 533 43 406 288 142 28 chr11 115872076 115872364 -34911189 - HERVL LTR ERVL -631 5023 4703 696 355 62 14 chr11 115872713 115873232 -34910321 - HERVL LTR ERVL -1454 4310 3767 1909 204 124 24 chr11 115873474 115873881 -34909672 + MLT2B1 LTR ERVL 8 373 -147 204 40 0 0 chr11 115873881 115873906 -34909647 + (TC)n Simple_repeat Simple_repeat 2 26 0 456 19 0 0 chr11 115873909 115873962 -34909591 + (TG)n Simple_repeat Simple_repeat 2 54 0 1909 204 124 24 chr11 115873962 115874016 -34909537 + MLT2B1 LTR ERVL 374 520 0 215 359 39 39 chr11 115874294 115874397 -34909156 + L2 LINE L2 3203 3305 -8 274 321 0 0 chr11 115875905 115875989 -34907564 + Charlie7 DNA MER1_type 1 84 -2528 27 81 0 0 chr11 115875998 115876060 -34907493 + AT_rich Low_complexity Low_complexity 1 62 0 277 26 0 0 chr11 115876060 115876098 -34907455 - L1PB3 LINE L1 -2 6152 6115 309 247 59 77 chr11 115876105 115876275 -34907278 - HAL1 LINE L1 -4 2503 2337 441 242 47 0 chr11 115877166 115877294 -34906259 + L1MC1 LINE L1 4549 4682 -1464 1036 283 86 12 chr11 115877349 115877688 -34905865 - MLT1A1 LTR MaLR 0 365 2 4250 178 69 10 chr11 115877695 115878561 -34904992 + L1MC1 LINE L1 5410 6326 -7 237 319 11 11 chr11 115878941 115879035 -34904518 + MIR3 SINE MIR 92 185 -23 1147 104 21 26 chr11 115879635 115879828 -34903725 + L1PA10 LINE L1 5974 6165 -3 184 120 0 0 chr11 115880104 115880129 -34903424 - L2 LINE L2 -26 3246 3222 476 290 143 23 chr11 115880778 115880995 -34902558 + MIR SINE MIR 2 244 -18 340 354 9 9 chr11 115881295 115881408 -34902145 + L2 LINE L2 3201 3313 0 391 243 68 65 chr11 115881810 115882015 -34901538 + MIR SINE MIR 46 250 -12 2660 217 64 38 chr11 115882475 115883443 -34900110 + MER45B DNA AcHobo 2 1040 0 2800 136 5 0 chr11 115883485 115883911 -34899642 - MSTA LTR MaLR 0 428 1 1532 158 108 0 chr11 115883931 115884210 -34899343 + AluSg SINE Alu 1 309 -1 195 42 0 0 chr11 115884516 115884540 -34899013 + (A)n Simple_repeat Simple_repeat 1 24 0 268 321 23 38 chr11 115885207 115885338 -34898215 - MIR SINE MIR -28 234 106 21 0 0 0 chr11 115885575 115885596 -34897957 + AT_rich Low_complexity Low_complexity 1 21 0 267 331 63 10 chr11 115886167 115886466 -34897087 - L1 LINE L1 -1096 5050 4736 806 213 6 12 chr11 115887077 115887241 -34896312 + FRAM SINE Alu 1 154 -22 231 114 0 0 chr11 115887380 115887415 -34896138 + (TA)n Simple_repeat Simple_repeat 2 36 0 228 329 0 47 chr11 115887562 115887647 -34895906 + MLT1K LTR MaLR 214 294 -294 325 148 0 19 chr11 115888185 115888239 -34895314 - MER63 DNA MER1_type -311 751 699 228 268 24 12 chr11 115888284 115888366 -34895187 + MIR SINE MIR 180 262 0 256 319 86 66 chr11 115888496 115888950 -34894603 - LTR16B LTR ERVL -1 463 1 240 281 62 8 chr11 115889827 115889955 -34893598 + MER103 DNA DNA 8 142 -24 347 250 153 66 chr11 115892755 115892951 -34890602 - MIR SINE MIR -1 261 49 221 361 50 50 chr11 115894500 115894680 -34888873 + L2 LINE L2 2903 3082 -190 277 332 81 43 chr11 115894715 115894926 -34888627 + MIR SINE MIR 8 226 -36 341 213 0 0 chr11 115895724 115895785 -34887768 + AluJ/FLAM SINE Alu 5 65 -237 223 341 85 54 chr11 115895906 115896129 -34887424 + MIR SINE MIR 20 249 -13 270 0 0 0 chr11 115897676 115897706 -34885847 + (CA)n Simple_repeat Simple_repeat 1 30 0 27 0 0 0 chr11 115897924 115897951 -34885602 + AT_rich Low_complexity Low_complexity 1 27 0 33 0 0 0 chr11 115898066 115898099 -34885454 + AT_rich Low_complexity Low_complexity 1 33 0 635 299 85 5 chr11 115898152 115898363 -34885190 - MIR SINE MIR -34 228 1 207 342 120 17 chr11 115898443 115898560 -34884993 - L2 LINE L2 -228 3044 2916 227 294 0 0 chr11 115898788 115898839 -34884714 + MIR SINE MIR 19 69 -193 237 282 14 14 chr11 115898918 115898989 -34884564 + MIR SINE MIR 82 152 -110 330 371 53 12 chr11 115899065 115899235 -34884318 - L2 LINE L2 -345 2969 2793 917 240 11 19 chr11 115899290 115899561 -34883992 + L1MB7 LINE L1 2665 2933 -3213 5715 193 22 12 chr11 115899561 115901615 -34881938 + L1PA16 LINE L1 3957 6024 -142 2027 52 0 22 chr11 115902055 115902322 -34881231 - L1PA7 LINE L1 0 6154 5894 3708 213 75 4 chr11 115902322 115903377 -34880176 + L1MB7 LINE L1 4905 6056 -128 216 0 0 0 chr11 115903377 115903401 -34880152 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3708 213 75 4 chr11 115903401 115903523 -34880030 + L1MB7 LINE L1 6056 6168 -16 527 310 146 21 chr11 115904423 115904800 -34878753 - L2 LINE L2 -836 2478 2055 934 252 90 29 chr11 115904904 115905214 -34878339 - MER77 LTR ERV1 -222 383 55 685 324 159 26 chr11 115905273 115905809 -34877744 - L2 LINE L2 -1258 2056 1400 188 35 35 0 chr11 115905809 115905838 -34877715 + (TTG)n Simple_repeat Simple_repeat 2 31 0 685 324 159 26 chr11 115905838 115906020 -34877533 - L2 LINE L2 -1914 1400 1243 759 169 36 46 chr11 115906020 115906215 -34877338 + L1MA7 LINE L1 6093 6285 -6 207 100 0 0 chr11 115907473 115907503 -34876050 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 1671 177 0 3 chr11 115907504 115907787 -34875766 - AluJo SINE Alu -30 282 1 523 214 40 8 chr11 115909732 115909858 -34873695 + MER5B DNA MER1_type 1 130 -48 385 321 84 11 chr11 115909918 115910108 -34873445 + MIR SINE MIR 12 215 -47 189 333 63 36 chr11 115910114 115910225 -34873328 - MIR SINE MIR -101 161 48 318 291 58 58 chr11 115910880 115911086 -34872467 + MIR SINE MIR 57 262 0 785 162 32 0 chr11 115911891 115912045 -34871508 - L1MA6 LINE L1 -51 6249 6091 235 200 0 0 chr11 115912043 115912093 -34871460 + L1MA6 LINE L1 6250 6299 -1 * 417 283 19 9 chr11 115912880 115912986 -34870567 + L2 LINE L2 3195 3301 -12 607 344 31 40 chr11 115913156 115913578 -34869975 + L2 LINE L2 2839 3256 -57 21 0 0 0 chr11 115913900 115913921 -34869632 + AT_rich Low_complexity Low_complexity 1 21 0 2355 62 0 3 chr11 115914132 115914437 -34869116 + AluY SINE Alu 1 304 -7 30 27 0 0 chr11 115914842 115914879 -34868674 + AT_rich Low_complexity Low_complexity 1 37 0 2029 125 10 0 chr11 115915254 115915542 -34868011 - AluSc SINE Alu -18 291 1 269 192 20 61 chr11 115915644 115915743 -34867810 - L1MC4 LINE L1 -1339 6703 6609 25 0 0 0 chr11 115915811 115915836 -34867717 + AT_rich Low_complexity Low_complexity 1 25 0 349 304 11 11 chr11 115916304 115916396 -34867157 - MER5A DNA MER1_type 0 189 98 2556 198 17 26 chr11 115917735 115918276 -34865277 + MER74A LTR ERVL 1 536 -22 23 0 0 0 chr11 115918997 115919020 -34864533 + AT_rich Low_complexity Low_complexity 1 23 0 2126 112 3 7 chr11 115919201 115919497 -34864056 + AluSc SINE Alu 1 295 -14 314 302 163 16 chr11 115919788 115919917 -34863636 - L2 LINE L2 0 3272 3125 306 0 0 0 chr11 115920873 115920907 -34862646 + (TG)n Simple_repeat Simple_repeat 1 34 0 1846 173 52 44 chr11 115922160 115922708 -34860845 + MLT2A2 LTR ERVL 1 554 0 2491 37 0 10 chr11 115922796 115923091 -34860462 - AluY SINE Alu -13 298 7 280 258 210 16 chr11 115923326 115923450 -34860103 - MER69A DNA AcHobo -2 175 28 1225 177 31 62 chr11 115923611 115923899 -34859654 - Tigger7 DNA MER2_type 0 2487 2209 747 229 78 0 chr11 115923900 115924053 -34859500 - Tigger7 DNA MER2_type -531 174 10 889 207 14 19 chr11 115924834 115925047 -34858506 - MER106A DNA MER1_type 0 236 25 67 0 0 0 chr11 115925047 115925114 -34858439 + AT_rich Low_complexity Low_complexity 1 67 0 212 321 24 0 chr11 115925331 115925415 -34858138 + L2 LINE L2 3185 3270 -2 223 330 21 21 chr11 115925679 115925773 -34857780 + MIR SINE MIR 65 158 -104 218 56 28 0 chr11 115926018 115926054 -34857499 + (GA)n Simple_repeat Simple_repeat 2 38 0 732 170 0 31 chr11 115926142 115926372 -34857181 + GA-rich Low_complexity Low_complexity 1 222 0 22 35 0 0 chr11 115926918 115926947 -34856606 + AT_rich Low_complexity Low_complexity 1 29 0 1541 209 21 79 chr11 115927598 115927623 -34855930 - MLT2D LTR ERVL -8 406 381 2151 135 46 3 chr11 115927623 115927972 -34855581 - THE1B LTR MaLR 0 364 1 1541 209 21 79 chr11 115927972 115928025 -34855528 - MLT2D LTR ERVL -33 381 326 249 33 0 0 chr11 115928025 115928055 -34855498 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 417 39 0 0 chr11 115928054 115928105 -34855448 + (GA)n Simple_repeat Simple_repeat 2 52 0 1541 209 21 79 chr11 115928055 115928456 -34855097 - MLT2D LTR ERVL -88 326 1 5565 128 18 14 chr11 115929091 115929995 -34853558 + LTR5 LTR ERVK 1 907 -62 296 311 82 25 chr11 115930504 115930626 -34852927 - MIR SINE MIR -63 145 17 21 36 0 0 chr11 115930786 115930814 -34852739 + AT_rich Low_complexity Low_complexity 1 28 0 1849 114 0 79 chr11 115931099 115931414 -34852139 - AluSx SINE Alu -1 311 22 213 39 0 0 chr11 115932936 115932962 -34850591 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 400 270 20 86 chr11 115933458 115933762 -34849791 + L1MC5 LINE L1 7632 7915 -46 * 5829 193 18 39 chr11 115933747 115934832 -34848721 - L1MC1 LINE L1 -1 6332 5226 233 75 25 0 chr11 115934832 115934872 -34848681 + (TA)n Simple_repeat Simple_repeat 2 42 0 1973 133 0 0 chr11 115934878 115935157 -34848396 - AluSx SINE Alu -33 279 1 5829 193 18 39 chr11 115935157 115936350 -34847203 - L1MC1 LINE L1 -1112 5221 3850 1807 201 6 9 chr11 115936447 115936791 -34846762 + MLT2C1 LTR ERVL 1 343 -54 188 268 123 87 chr11 115937337 115937475 -34846078 + MER5B DNA MER1_type 7 149 -29 859 226 78 50 chr11 115939022 115939305 -34844248 - MLT1A1 LTR MaLR -74 291 1 2354 78 0 7 chr11 115939395 115939702 -34843851 + AluY SINE Alu 1 305 -6 234 252 0 126 chr11 115940222 115940325 -34843228 - MIR SINE MIR -56 206 117 2515 148 39 9 chr11 115940565 115940998 -34842555 - Tigger2 DNA MER2_type 0 2718 2273 335 197 0 28 chr11 115940988 115941059 -34842494 - Tigger2 DNA MER2_type -2649 69 1 * 339 239 0 43 chr11 115942396 115942488 -34841065 - L1MC4 LINE L1 -1341 6701 6614 223 308 89 35 chr11 115943135 115943304 -34840249 + MIR SINE MIR 85 262 0 248 229 12 36 chr11 115944682 115944765 -34838788 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 2068 100 11 0 chr11 115944857 115945186 -34838367 + AluSp SINE Alu 1 332 0 2625 79 6 0 chr11 115945228 115945581 -34837972 - THE1A LTR MaLR 0 355 1 26 50 0 0 chr11 115945891 115945931 -34837622 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr11 115946948 115946969 -34836584 + AT_rich Low_complexity Low_complexity 1 21 0 2475 306 31 5 chr11 115948130 115948997 -34834556 + L1MC/D LINE L1 55 944 -5452 635 261 26 10 chr11 115949012 115949207 -34834346 + L1MC/D LINE L1 4868 5065 -1150 6634 173 17 47 chr11 115949208 115949613 -34833940 + L1MA4 LINE L1 3862 4278 -2022 2176 135 33 30 chr11 115949613 115949976 -34833577 - THE1B LTR MaLR 0 364 1 6634 173 17 47 chr11 115949976 115951547 -34832006 + L1MA4 LINE L1 4278 5783 -517 1802 129 4 7 chr11 115951569 115951841 -34831712 + AluY SINE Alu 21 291 -20 27 0 0 0 chr11 115951841 115951868 -34831685 + AT_rich Low_complexity Low_complexity 1 27 0 2915 157 6 6 chr11 115951868 115952389 -34831164 + L1MA4 LINE L1 5773 6293 -7 749 221 92 30 chr11 115952397 115952835 -34830718 + L1MC/D LINE L1 5049 5499 -743 2953 227 82 84 chr11 115952860 115954207 -34829346 + L1ME1 LINE L1 3749 5095 -1051 2145 98 6 41 chr11 115954207 115954347 -34829206 + AluSc SINE Alu 3 146 -163 2574 29 7 10 chr11 115954347 115954657 -34828896 + AluY SINE Alu 1 309 -2 2145 98 6 41 chr11 115954657 115954834 -34828719 + AluSc SINE Alu 146 309 0 2953 227 82 84 chr11 115954834 115954993 -34828560 + L1ME1 LINE L1 5095 5253 -893 1590 255 46 59 chr11 115954984 115955678 -34827875 + L1ME1 LINE L1 5478 6162 -4 * 25 31 0 0 chr11 115955692 115955724 -34827829 + AT_rich Low_complexity Low_complexity 1 32 0 222 91 0 0 chr11 115956022 115956055 -34827498 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 19965 100 10 1 chr11 115956055 115959827 -34823726 - L1PA8 LINE L1 -24 6463 2660 9747 108 67 24 chr11 115959814 115961374 -34822179 - L1PA8 LINE L1 -4828 1633 7 * 251 259 69 38 chr11 115961515 115961646 -34821907 - MER112 DNA MER1_type -86 174 40 255 326 166 28 chr11 115963399 115963580 -34819973 + MIR SINE MIR 13 218 -44 2960 93 15 24 chr11 115963923 115964383 -34819170 + L1PA8 LINE L1 5712 6167 -5 182 356 111 0 chr11 115964952 115965042 -34818511 + MIR SINE MIR 43 142 -66 1356 220 59 89 chr11 115965721 115966226 -34817327 - L1MB5 LINE L1 0 6174 5685 283 308 130 76 chr11 115966414 115966729 -34816824 + L2 LINE L2 2941 3272 0 245 324 81 122 chr11 115967325 115967572 -34815981 + L2 LINE L2 3033 3269 -3 350 346 54 61 chr11 115969365 115969793 -34813760 + L2 LINE L2 2888 3312 -1 477 336 72 14 chr11 115969846 115970069 -34813484 + MIR SINE MIR 1 236 -26 2371 55 0 3 chr11 115970166 115970458 -34813095 + AluY SINE Alu 3 293 -18 22 0 0 0 chr11 115970719 115970741 -34812812 + AT_rich Low_complexity Low_complexity 1 22 0 437 291 88 11 chr11 115970877 115971138 -34812415 + L1ME4a LINE L1 5594 5874 -247 2493 249 71 36 chr11 115971317 115972730 -34810823 + L1ME1 LINE L1 4691 6158 -8 21 36 0 0 chr11 115974088 115974116 -34809437 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 115975275 115975296 -34808257 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 115975312 115975333 -34808220 + AT_rich Low_complexity Low_complexity 1 21 0 293 292 11 22 chr11 115975377 115975511 -34808042 - MIR3 SINE MIR -18 190 57 1646 208 3 3 chr11 115975959 115976248 -34807305 - AluJo SINE Alu -23 289 1 22 0 0 0 chr11 115976339 115976361 -34807192 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 115977020 115977048 -34806505 + AT_rich Low_complexity Low_complexity 1 28 0 237 338 21 49 chr11 115978038 115978180 -34805373 + L2 LINE L2 3139 3276 -37 1425 264 75 27 chr11 115978217 115978932 -34804621 - L1MEc LINE L1 -4894 1502 753 191 176 27 27 chr11 115979060 115979134 -34804419 + (TA)n Simple_repeat Simple_repeat 2 75 0 201 187 32 57 chr11 115979264 115979387 -34804166 + (TA)n Simple_repeat Simple_repeat 1 120 0 2266 296 21 11 chr11 115979390 115980103 -34803450 - L1MEc LINE L1 -5643 753 34 24 32 0 0 chr11 115981150 115981181 -34802372 + AT_rich Low_complexity Low_complexity 1 31 0 1928 269 59 58 chr11 115984008 115985057 -34798496 + L1MC4 LINE L1 6465 7514 -528 415 311 34 40 chr11 115985620 115985797 -34797756 - MER5A DNA MER1_type 0 189 14 212 187 53 0 chr11 115986169 115986244 -34797309 + (TA)n Simple_repeat Simple_repeat 1 79 0 196 333 16 0 chr11 115986501 115986564 -34796989 + L2 LINE L2 3173 3236 -36 1038 275 83 12 chr11 115986643 115987047 -34796506 - MLT1E LTR MaLR -27 566 141 244 139 0 0 chr11 115987087 115987123 -34796430 - MLT1E LTR MaLR -618 36 1 288 313 75 14 chr11 115987438 115987585 -34795968 - MIR SINE MIR 0 262 107 2426 52 0 0 chr11 115988786 115989077 -34794476 + AluY SINE Alu 1 291 -20 353 269 38 4 chr11 115989239 115989413 -34794140 - MIR SINE MIR -20 242 3 515 281 128 33 chr11 115989945 115990187 -34793366 + MLT1L LTR MaLR 351 615 0 308 240 62 78 chr11 115990216 115990351 -34793202 - MIR SINE MIR -61 147 14 297 247 118 0 chr11 115990802 115990895 -34792658 - MIR SINE MIR -79 183 80 1761 193 131 1 chr11 115991224 115991638 -34791915 + L1MB5 LINE L1 5670 6140 -34 459 0 0 0 chr11 115991698 115991749 -34791804 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 227 227 15 0 chr11 115991749 115991815 -34791738 + (CA)n Simple_repeat Simple_repeat 2 68 0 315 357 60 12 chr11 115992350 115992518 -34791035 + L2 LINE L2 1403 1578 -1736 5066 257 48 23 chr11 115992576 115994064 -34789489 + ERVL LTR ERVL 3398 5014 -750 1253 118 0 0 chr11 115994070 115994248 -34789305 + AluSp SINE Alu 135 312 -1 1341 217 102 45 chr11 115994276 115994719 -34788834 + ERVL LTR ERVL 5038 5505 -259 212 246 14 0 chr11 115994781 115994850 -34788703 + (TG)n Simple_repeat Simple_repeat 2 71 0 305 244 81 12 chr11 115996430 115996516 -34787037 - LTR16A1 LTR ERVL -27 430 339 274 126 195 12 chr11 115996826 115996908 -34786645 + L1MC3 LINE L1 7506 7584 -201 1014 275 56 22 chr11 115996908 115997268 -34786285 - MLT1D LTR MaLR 0 505 134 802 235 39 93 chr11 115997265 115997659 -34785894 + MLT1A2 LTR MaLR 7 390 0 * 797 215 37 0 chr11 115997686 115997877 -34785676 + L1MC3 LINE L1 7582 7779 -6 9721 220 22 32 chr11 115998044 116001209 -34782344 + L1PA10 LINE L1 1 4463 -3121 8782 138 11 53 chr11 116001209 116003480 -34780073 + L1PA10 LINE L1 5339 7591 -15 198 71 0 0 chr11 116003483 116003511 -34780042 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr11 116003815 116003837 -34779716 + AT_rich Low_complexity Low_complexity 1 22 0 369 0 0 0 chr11 116004233 116004274 -34779279 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 36 0 0 chr11 116005025 116005053 -34778500 + AT_rich Low_complexity Low_complexity 1 28 0 8222 119 19 6 chr11 116005846 116007115 -34776438 - L1PA8 LINE L1 -1503 4643 3358 6398 87 8 3 chr11 116007115 116008604 -34774949 + L1PA8 LINE L1 4667 6159 -13 4453 251 94 25 chr11 116009155 116011126 -34772427 + L1MB5 LINE L1 542 2634 -4012 4705 204 20 7 chr11 116011126 116012034 -34771519 + ERVL LTR ERVL 4026 4945 -819 2520 254 52 26 chr11 116012104 116013035 -34770518 + L1MB5 LINE L1 3934 4888 -1756 1277 120 19 42 chr11 116013036 116013252 -34770301 - THE1B LTR MaLR 0 364 154 1889 21 0 0 chr11 116013252 116013487 -34770066 - L1PA3 LINE L1 -758 5388 5154 6485 29 0 0 chr11 116013487 116014246 -34769307 + L1PA3 LINE L1 5394 6152 -3 27 0 0 0 chr11 116014313 116014340 -34769213 + AT_rich Low_complexity Low_complexity 1 27 0 952 169 12 0 chr11 116014340 116014506 -34769047 - THE1B LTR MaLR -196 168 1 9327 102 16 13 chr11 116014506 116015839 -34767714 - THE1B-int LTR MaLR 0 1580 244 2874 230 86 33 chr11 116015837 116016293 -34767260 + L1MB5 LINE L1 5168 5599 -1073 * 198 0 0 0 chr11 116016293 116016315 -34767238 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2874 230 86 33 chr11 116016315 116016885 -34766668 + L1MB5 LINE L1 5599 6290 -382 1642 179 9 31 chr11 116016885 116017203 -34766350 - 7SLRNA srpRNA srpRNA 0 320 10 2874 230 86 33 chr11 116017203 116017590 -34765963 + L1MB5 LINE L1 6290 6655 -17 1260 288 76 71 chr11 116017873 116018619 -34764934 - MER21B LTR ERV1 -113 750 1 2281 100 3 0 chr11 116018832 116019142 -34764411 + AluY SINE Alu 1 311 0 300 284 42 113 chr11 116019147 116019556 -34763997 - L1MEd LINE L1 -4893 2054 1675 2134 217 138 26 chr11 116020359 116021188 -34762365 - Zaphod DNA AcHobo -817 3214 2294 2651 233 51 5 chr11 116021188 116021820 -34761733 - L1MEd LINE L1 -5578 1281 621 1650 260 73 54 chr11 116021963 116022537 -34761016 - L1MEd LINE L1 -6264 595 11 1481 271 92 41 chr11 116022575 116023469 -34760084 - Zaphod DNA AcHobo -1854 2177 1239 249 33 0 0 chr11 116024568 116024598 -34758955 + (TA)n Simple_repeat Simple_repeat 1 30 0 476 295 123 69 chr11 116025106 116025570 -34757983 - LTR67 LTR ERVL -39 518 30 475 272 19 75 chr11 116025921 116026134 -34757419 + L2 LINE L2 3108 3308 -5 21 36 0 0 chr11 116026277 116026305 -34757248 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr11 116026322 116026347 -34757206 + (TC)n Simple_repeat Simple_repeat 2 26 0 225 0 0 0 chr11 116026346 116026371 -34757182 + (TA)n Simple_repeat Simple_repeat 2 26 0 1813 96 85 43 chr11 116027048 116027330 -34756223 - AluSg SINE Alu -16 294 1 262 289 133 22 chr11 116027338 116027518 -34756035 - L2 LINE L2 -6 3307 3108 331 353 75 25 chr11 116028995 116029196 -34754357 + L3 LINE CR1 963 1173 -404 180 296 92 20 chr11 116029292 116029390 -34754163 + L3 LINE CR1 1309 1413 -164 22 70 0 0 chr11 116029674 116029717 -34753836 + AT_rich Low_complexity Low_complexity 1 43 0 253 324 19 0 chr11 116030037 116030145 -34753408 - L1ME LINE L1 -457 5664 5555 228 240 144 34 chr11 116030654 116030800 -34752753 - MIR SINE MIR 0 262 101 318 115 0 0 chr11 116030823 116030875 -34752678 + (TA)n Simple_repeat Simple_repeat 1 52 0 330 273 30 30 chr11 116031820 116031952 -34751601 + L1ME LINE L1 895 1026 -6112 1544 239 29 20 chr11 116031955 116032700 -34750853 + L1ME LINE L1 5691 6437 -540 458 323 50 15 chr11 116032710 116032908 -34750645 + L1MEc LINE L1 1440 1644 -5215 458 231 89 49 chr11 116033423 116033609 -34749944 + L1MEc LINE L1 1766 1943 -5014 544 13 53 0 chr11 116033609 116033684 -34749869 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 458 231 89 49 chr11 116033684 116033845 -34749708 + L1MEc LINE L1 1943 2136 -4821 * 548 273 105 38 chr11 116033842 116034219 -34749334 + L1M1 LINE L1 1635 2149 -4414 2733 211 83 38 chr11 116034270 116035205 -34748348 + L1ME2 LINE L1 5147 6117 -47 189 0 0 0 chr11 116035282 116035303 -34748250 + (TG)n Simple_repeat Simple_repeat 2 22 0 2142 147 60 58 chr11 116035546 116035994 -34747559 + LTR47A LTR ERVL 4 452 0 2310 75 0 3 chr11 116037536 116037830 -34745723 - AluSq SINE Alu -20 293 1 2225 113 3 0 chr11 116038207 116038517 -34745036 - AluSp SINE Alu -2 311 1 2138 154 8 24 chr11 116038867 116039237 -34744316 - THE1B LTR MaLR 0 364 1 10348 121 12 26 chr11 116039242 116040838 -34742715 - THE1B-int LTR MaLR -6 1574 1 2300 146 5 24 chr11 116040838 116041209 -34742344 - THE1B LTR MaLR 0 364 1 183 100 0 0 chr11 116041371 116041401 -34742152 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 244 254 0 0 chr11 116043062 116043117 -34740436 + (TA)n Simple_repeat Simple_repeat 1 55 0 384 200 11 46 chr11 116043119 116043294 -34740259 + (CATATA)n Simple_repeat Simple_repeat 3 171 0 1350 174 39 93 chr11 116043855 116044241 -34739312 + MLT1A1 LTR MaLR 1 365 0 225 178 0 0 chr11 116044482 116044527 -34739026 + CT-rich Low_complexity Low_complexity 4 48 0 1503 203 17 3 chr11 116044850 116045146 -34738407 - AluJb SINE Alu -12 300 1 491 314 44 6 chr11 116045331 116045490 -34738063 - MIR SINE MIR -95 167 3 31 0 0 0 chr11 116046568 116046599 -34736954 + AT_rich Low_complexity Low_complexity 1 31 0 309 242 50 42 chr11 116046850 116046970 -34736583 + LTR16A1 LTR ERVL 23 143 -314 565 297 24 0 chr11 116047005 116047170 -34736383 + LTR16A1 LTR ERVL 289 457 0 2368 60 26 0 chr11 116047304 116047606 -34735947 - AluY SINE Alu -1 310 1 391 281 98 39 chr11 116047662 116047865 -34735688 - L2 LINE L2 -4 3309 3095 22 0 0 0 chr11 116048275 116048297 -34735256 + AT_rich Low_complexity Low_complexity 1 22 0 3262 149 70 23 chr11 116048830 116049884 -34733669 - Tigger3b DNA MER2_type -3 1229 1 7053 262 79 18 chr11 116049938 116053516 -34730037 + L1ME1 LINE L1 1619 5418 -797 1034 217 183 7 chr11 116053516 116053811 -34729742 + L1MB8 LINE L1 5818 6164 -14 2404 257 72 20 chr11 116053829 116054106 -34729447 + L1ME1 LINE L1 5429 5690 -545 1847 206 48 69 chr11 116054106 116054731 -34728822 - LTR9 LTR ERV1 0 612 1 216 0 0 0 chr11 116054733 116054757 -34728796 + (CA)n Simple_repeat Simple_repeat 2 25 0 2404 257 72 20 chr11 116054757 116055238 -34728315 + L1ME1 LINE L1 5690 6230 -5 21 0 0 0 chr11 116055345 116055366 -34728187 + AT_rich Low_complexity Low_complexity 1 21 0 301 317 50 0 chr11 116056769 116056870 -34726683 - MIR SINE MIR -88 174 69 26 30 0 0 chr11 116058668 116058701 -34724852 + AT_rich Low_complexity Low_complexity 1 33 0 180 158 0 0 chr11 116058718 116058756 -34724797 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 264 167 0 0 chr11 116059191 116059233 -34724320 + 5S rRNA rRNA 1 42 -79 279 287 24 79 chr11 116059379 116059543 -34724010 + L1ME4a LINE L1 4015 4169 -1977 673 37 0 0 chr11 116059717 116059798 -34723755 - L1PA5 LINE L1 -164 5990 5910 383 88 0 0 chr11 116059798 116059849 -34723704 + L1PA5 LINE L1 6098 6154 0 484 145 0 0 chr11 116059849 116059925 -34723628 + L1M2 LINE L1 5605 5680 -632 1961 119 3 25 chr11 116060097 116060441 -34723112 - AluSg SINE Alu 0 338 1 297 244 11 11 chr11 116060479 116060569 -34722984 + L1ME4a LINE L1 4767 4856 -1290 21 26 0 26 chr11 116060643 116060662 -34722891 + AT_rich Low_complexity Low_complexity 1 19 -19 2421 45 0 0 chr11 116060662 116060949 -34722604 - AluY SINE Alu -24 287 1 21 26 0 26 chr11 116060949 116060968 -34722585 + AT_rich Low_complexity Low_complexity 19 38 0 30 89 0 0 chr11 116060983 116061062 -34722491 + AT_rich Low_complexity Low_complexity 1 79 0 276 247 14 0 chr11 116061622 116061695 -34721858 + L1ME4a LINE L1 5594 5667 -454 298 296 90 5 chr11 116061706 116061929 -34721624 + L1ME4a LINE L1 5707 5948 -173 317 185 0 12 chr11 116062316 116062397 -34721156 + GA-rich Low_complexity Low_complexity 1 80 0 339 216 147 20 chr11 116063308 116063425 -34720128 + MER104 DNA Tc2 59 179 -1 5520 133 20 6 chr11 116064268 116065220 -34718333 - L1PA16 LINE L1 -9 6157 5192 199 315 72 9 chr11 116065760 116065871 -34717682 + MIR SINE MIR 66 183 -79 2520 148 13 20 chr11 116066163 116066616 -34716937 - L1PA16 LINE L1 0 6166 5717 23 78 0 0 chr11 116066636 116066687 -34716866 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr11 116067460 116067484 -34716069 + AT_rich Low_complexity Low_complexity 1 24 0 415 267 0 7 chr11 116068511 116068646 -34714907 + (TA)n Simple_repeat Simple_repeat 2 135 0 466 248 74 0 chr11 116068931 116069052 -34714501 + MIR SINE MIR 79 208 -54 355 319 44 0 chr11 116069666 116069779 -34713774 + MIR SINE MIR 57 174 -88 662 232 42 21 chr11 116070082 116070272 -34713281 - MIR SINE MIR -10 252 59 825 301 164 12 chr11 116070299 116070934 -34712619 - L2 LINE L2 -2 3311 2575 739 157 22 22 chr11 116070978 116071112 -34712441 + AluJo SINE Alu 1 134 -178 435 236 178 29 chr11 116071169 116071343 -34712210 - L2 LINE L2 -777 2537 2338 687 321 36 13 chr11 116071403 116071708 -34711845 - MLT1I LTR MaLR 0 409 98 1128 289 121 2 chr11 116071798 116072227 -34711326 - L2 LINE L2 -1069 2245 1766 219 36 0 0 chr11 116073816 116073844 -34709709 + (TTA)n Simple_repeat Simple_repeat 3 30 0 874 47 0 0 chr11 116073844 116073951 -34709602 - L1PA4 LINE L1 -18 6137 6031 368 261 174 14 chr11 116075328 116075466 -34708087 + MIR SINE MIR 103 262 0 390 200 0 0 chr11 116075966 116076036 -34707517 + Tigger5 DNA MER2_type 2254 2323 0 8558 27 3 0 chr11 116077485 116079022 -34704531 + L1PA4 LINE L1 4352 5892 -263 287 203 0 14 chr11 116079132 116079201 -34704352 - L1 LINE L1 -1555 4591 4524 1100 193 33 47 chr11 116079236 116079537 -34704016 + L1MA10 LINE L1 6038 6334 0 275 320 30 0 chr11 116079915 116080015 -34703538 + MER94 DNA DNA 11 113 -21 613 280 62 111 chr11 116080041 116080152 -34703401 - L1M4 LINE L1 -1147 4999 4884 2432 62 0 7 chr11 116080152 116080459 -34703094 + AluY SINE Alu 1 305 -6 613 280 62 111 chr11 116080459 116080697 -34702856 - L1M4 LINE L1 -1262 4884 4636 204 111 0 0 chr11 116080697 116080733 -34702820 + (CA)n Simple_repeat Simple_repeat 1 36 0 613 280 62 111 chr11 116080733 116081146 -34702407 - L1M4 LINE L1 -1510 4636 4274 783 204 31 59 chr11 116081148 116081403 -34702150 - L1M4 LINE L1 -852 5294 5047 523 332 15 10 chr11 116081450 116081655 -34701898 + MIR SINE MIR 42 247 -15 736 152 73 26 chr11 116082152 116082303 -34701250 - AluJo SINE Alu -21 291 134 429 245 0 0 chr11 116082349 116082447 -34701106 - AluJo SINE Alu -177 125 28 24 0 0 0 chr11 116082581 116082605 -34700948 + AT_rich Low_complexity Low_complexity 1 24 0 353 262 137 36 chr11 116083274 116083442 -34700111 + MIR SINE MIR 54 238 -24 519 363 75 17 chr11 116084529 116085008 -34698545 + L2 LINE L2 1528 2034 -1280 182 331 53 41 chr11 116085025 116085194 -34698359 + L2 LINE L2 2325 2495 -819 2783 10 0 0 chr11 116085453 116085761 -34697792 + AluYb8 SINE Alu 1 308 -10 180 0 0 0 chr11 116085926 116085946 -34697607 + (A)n Simple_repeat Simple_repeat 1 20 0 25 0 0 0 chr11 116086331 116086356 -34697197 + AT_rich Low_complexity Low_complexity 1 25 0 262 290 78 35 chr11 116086381 116086612 -34696941 - L1MEd LINE L1 -3656 2473 2233 1759 233 47 53 chr11 116086884 116087484 -34696069 - L1ME2 LINE L1 -9 6155 5560 1155 159 55 0 chr11 116087846 116087993 -34695560 - L1MA9 LINE L1 0 6312 6148 333 0 0 0 chr11 116087993 116088030 -34695523 + (TG)n Simple_repeat Simple_repeat 2 38 0 1155 159 55 0 chr11 116088030 116088102 -34695451 - L1MA9 LINE L1 -164 6148 6081 307 299 63 16 chr11 116088102 116088229 -34695324 - HAL1 LINE L1 -939 1568 1436 2217 82 0 0 chr11 116088238 116088545 -34695008 + AluSc SINE Alu 1 307 0 373 327 39 24 chr11 116088653 116088858 -34694695 - L1MEd LINE L1 -4934 1185 978 198 0 0 0 chr11 116088888 116088910 -34694643 + (TA)n Simple_repeat Simple_repeat 1 22 0 416 222 96 42 chr11 116089026 116089193 -34694360 - L1MEd LINE L1 -5942 177 2 30 59 0 0 chr11 116089986 116090037 -34693516 + AT_rich Low_complexity Low_complexity 1 51 0 1886 123 0 4 chr11 116090144 116090405 -34693148 + AluSx SINE Alu 1 260 -52 192 77 0 0 chr11 116090507 116090533 -34693020 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1905 126 27 20 chr11 116090907 116091208 -34692345 + AluSx SINE Alu 1 303 -9 25 95 0 0 chr11 116092744 116092818 -34690735 + AT_rich Low_complexity Low_complexity 1 74 0 22 0 0 0 chr11 116092866 116092888 -34690665 + AT_rich Low_complexity Low_complexity 1 22 0 199 210 99 25 chr11 116093243 116093324 -34690229 - MIR SINE MIR -92 116 30 211 202 12 71 chr11 116093677 116093761 -34689792 + A-rich Low_complexity Low_complexity 1 79 0 3182 208 14 44 chr11 116093784 116094552 -34689001 + L1MD2 LINE L1 5520 6264 -95 258 32 0 0 chr11 116094553 116094584 -34688969 + (CA)n Simple_repeat Simple_repeat 2 32 0 2078 174 38 38 chr11 116094673 116095099 -34688454 + MSTB LTR MaLR 1 426 0 1922 137 43 43 chr11 116096096 116096469 -34687084 - THE1C LTR MaLR -2 373 1 802 199 75 20 chr11 116096901 116097102 -34686451 + L1MD3 LINE L1 7774 7985 -10 302 303 145 5 chr11 116097222 116097443 -34686110 + L1 LINE L1 4185 4436 -1710 1169 197 115 36 chr11 116097465 116097770 -34685783 - MER2 DNA MER2_type 0 345 17 1899 244 56 49 chr11 116097799 116099130 -34684423 - L1MDb LINE L1 -2535 3871 2414 1963 229 113 18 chr11 116099168 116100021 -34683532 - L1MDb LINE L1 -4318 2089 889 378 294 161 57 chr11 116100812 116101091 -34682462 - L2 LINE L2 0 3313 3006 23 54 0 0 chr11 116101256 116101293 -34682260 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr11 116101494 116101514 -34682039 + (TTCC)n Simple_repeat Simple_repeat 3 22 0 1232 224 41 20 chr11 116101550 116101844 -34681709 - AluJo SINE Alu 0 302 3 2335 135 80 12 chr11 116102045 116102468 -34681085 - LTR47A LTR ERVL 0 452 1 31 26 0 0 chr11 116103702 116103740 -34679813 + AT_rich Low_complexity Low_complexity 1 38 0 402 343 50 25 chr11 116103955 116104156 -34679397 - MIR SINE MIR -56 206 1 1383 158 12 4 chr11 116104359 116104612 -34678941 - Tigger4(Zombi) DNA MER2_type -1 2730 2476 364 256 0 0 chr11 116104604 116104686 -34678867 - Tigger4(Zombi) DNA MER2_type -2649 82 1 * 23 78 0 0 chr11 116105208 116105259 -34678294 + AT_rich Low_complexity Low_complexity 1 51 0 6941 243 104 31 chr11 116105269 116110476 -34673077 + L1M3e LINE L1 3 5278 -1828 7643 218 25 7 chr11 116110479 116112086 -34671467 + L1M1 LINE L1 17 1652 -5913 920 176 55 12 chr11 116112086 116112271 -34671282 + THE1B LTR MaLR 180 364 0 466 279 23 16 chr11 116112312 116112441 -34671112 + L2 LINE L2 3184 3313 0 2030 264 108 63 chr11 116112528 116115225 -34668328 - L1M4 LINE L1 -3273 3684 830 387 229 25 17 chr11 116115350 116115468 -34668085 - L1M4 LINE L1 -6334 521 96 30 27 0 0 chr11 116116264 116116301 -34667252 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr11 116116580 116116602 -34666951 + AT_rich Low_complexity Low_complexity 1 22 0 264 202 39 0 chr11 116118375 116118435 -34665118 + MIR SINE MIR 52 114 -94 570 265 0 0 chr11 116118634 116118751 -34664802 + FLAM_A SINE Alu 1 117 -16 9010 206 50 8 chr11 116118866 116120669 -34662884 + L1MA3 LINE L1 12 1891 -5674 * 12605 169 18 41 chr11 116120667 116124206 -34659347 + L1MA3 LINE L1 2319 5686 -2038 7371 26 23 1 chr11 116124206 116125190 -34658363 + L1PA3 LINE L1 5153 6155 0 12605 169 18 41 chr11 116125190 116127181 -34656372 + L1MA3 LINE L1 5686 7721 -3 23 0 0 0 chr11 116127295 116127318 -34656235 + AT_rich Low_complexity Low_complexity 1 23 0 207 306 35 24 chr11 116127663 116127748 -34655805 - L2 LINE L2 -1 3312 3227 460 283 68 122 chr11 116127748 116128102 -34655451 - HAL1 LINE L1 -976 1531 1197 246 189 19 0 chr11 116128105 116128158 -34655395 - MER58 DNA MER1_type 0 2420 2367 238 212 12 24 chr11 116128190 116128275 -34655278 + CT-rich Low_complexity Low_complexity 6 89 0 311 259 21 0 chr11 116128443 116128524 -34655029 + MIR SINE MIR 74 156 -61 248 307 60 41 chr11 116128601 116128819 -34654734 - HAL1 LINE L1 -1487 1020 799 21 0 0 0 chr11 116129513 116129534 -34654019 + AT_rich Low_complexity Low_complexity 1 21 0 394 306 0 18 chr11 116129767 116129903 -34653650 + MIR SINE MIR 4 138 -70 26 0 0 0 chr11 116130782 116130808 -34652745 + AT_rich Low_complexity Low_complexity 1 26 0 934 178 0 11 chr11 116130808 116130982 -34652571 - L1PB1 LINE L1 -3 6148 5977 708 144 18 0 chr11 116131124 116131235 -34652318 - MLT1B LTR MaLR -9 381 269 333 191 0 0 chr11 116131233 116131296 -34652257 - MLT1B LTR MaLR -266 124 62 * 304 354 0 26 chr11 116131585 116131725 -34651828 - MIR SINE MIR -70 138 1 1761 136 7 18 chr11 116132445 116132731 -34650822 + AluSx SINE Alu 1 283 -29 283 329 59 7 chr11 116133058 116133210 -34650343 + MIR SINE MIR 102 261 -1 1692 68 9 0 chr11 116133743 116133993 -34649560 + L1PA8 LINE L1 5931 6182 0 1526 194 10 20 chr11 116134550 116134849 -34648704 + AluJb SINE Alu 3 298 -14 667 168 16 15 chr11 116134859 116135094 -34648459 + GA-rich Low_complexity Low_complexity 1 235 0 1335 281 104 31 chr11 116135307 116136075 -34647478 - L2 LINE L2 -2 3311 2476 240 293 106 16 chr11 116136351 116136474 -34647079 + MIR SINE MIR 58 191 -71 2443 41 10 0 chr11 116136581 116136874 -34646679 - AluY SINE Alu -15 296 1 832 165 6 112 chr11 116139836 116140175 -34643378 - AluSp SINE Alu -10 303 1 228 122 0 0 chr11 116140314 116140355 -34643198 + (TG)n Simple_repeat Simple_repeat 2 42 0 807 197 133 47 chr11 116140395 116140628 -34642925 - MLT2C1 LTR ERVL -123 274 22 2028 157 55 6 chr11 116141242 116141586 -34641967 + THE1B LTR MaLR 3 363 -1 9894 117 36 32 chr11 116141587 116142059 -34641494 + THE1B-int LTR MaLR 1 470 -1110 1994 89 44 4 chr11 116142059 116142369 -34641184 + AluY SINE Alu 1 321 0 9894 117 36 32 chr11 116142369 116143470 -34640083 + THE1B-int LTR MaLR 470 1580 0 2257 143 22 6 chr11 116143470 116143828 -34639725 + THE1B LTR MaLR 1 364 0 1274 329 39 28 chr11 116144201 116144766 -34638787 + L2 LINE L2 900 1470 -1844 481 179 94 0 chr11 116144950 116145056 -34638497 + L1PA16 LINE L1 6042 6157 -9 370 252 98 0 chr11 116145114 116145237 -34638316 + L1ME2 LINE L1 5202 5336 -810 21 0 0 0 chr11 116145239 116145260 -34638293 + AT_rich Low_complexity Low_complexity 1 21 0 1668 139 7 63 chr11 116145268 116145569 -34637984 - AluJo SINE Alu -28 284 1 1229 256 36 29 chr11 116145576 116145990 -34637563 + L1ME2 LINE L1 5342 5758 -406 223 172 0 31 chr11 116146010 116146074 -34637479 + (TA)n Simple_repeat Simple_repeat 1 62 0 1954 137 25 0 chr11 116146078 116146362 -34637191 - AluSx SINE Alu -21 291 1 1238 255 40 5 chr11 116146366 116146738 -34636815 + L1ME2 LINE L1 5779 6163 -1 434 392 44 12 chr11 116147840 116148159 -34635394 - L2 LINE L2 -508 2806 2478 616 119 2 0 chr11 116148420 116148530 -34635023 + L1PA12 LINE L1 2656 2759 -4815 2181 90 4 0 chr11 116148530 116148808 -34634745 + AluY SINE Alu 1 279 -32 300 53 0 0 chr11 116148810 116148848 -34634705 + (CAA)n Simple_repeat Simple_repeat 2 39 0 615 143 0 0 chr11 116148848 116148953 -34634600 + L1MA1 LINE L1 5946 6050 -252 1554 126 4 0 chr11 116148960 116149190 -34634363 + AluSx SINE Alu 1 231 -81 25 23 0 23 chr11 116149294 116149309 -34634244 + AT_rich Low_complexity Low_complexity 1 15 -27 1755 79 8 4 chr11 116149309 116149562 -34633991 + L1MA1 LINE L1 6045 6298 -4 25 23 0 23 chr11 116149562 116149589 -34633964 + AT_rich Low_complexity Low_complexity 15 42 0 487 146 0 21 chr11 116152338 116152434 -34631119 - L1MA4 LINE L1 -1 6299 6206 4079 132 29 27 chr11 116152442 116153265 -34630288 - L1MA4 LINE L1 -312 5988 5160 2068 174 6 41 chr11 116153304 116153770 -34629783 - L1MA4 LINE L1 -985 5161 4712 189 0 0 0 chr11 116153781 116153802 -34629751 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr11 116153824 116153845 -34629708 + GC_rich Low_complexity Low_complexity 1 21 0 412 129 0 0 chr11 116203845 116203907 -34579646 - L1MA4 LINE L1 -2383 3763 3702 * 1157 123 54 20 chr11 116203906 116204110 -34579443 + L1P LINE L1 4845 5055 -1091 261 357 135 4 chr11 116204122 116204366 -34579187 + L1ME LINE L1 5540 5815 -355 687 204 11 88 chr11 116204369 116204550 -34579003 + MER5A DNA MER1_type 10 176 -13 532 288 93 43 chr11 116206267 116206663 -34576890 + L1PA15 LINE L1 5461 5876 -289 * 2867 189 74 11 chr11 116206309 116206933 -34576620 + L1MB7 LINE L1 5502 6164 -20 21 0 0 0 chr11 116206961 116206982 -34576571 + AT_rich Low_complexity Low_complexity 1 21 0 189 302 69 52 chr11 116207297 116207413 -34576140 - MIR3 SINE MIR -21 187 70 2220 164 16 64 chr11 116207529 116207979 -34575574 - MSTC LTR MaLR 0 428 1 991 297 61 32 chr11 116208061 116208556 -34574997 + L2 LINE L2 2805 3313 0 1364 156 23 108 chr11 116209611 116209963 -34573590 - MLT1B LTR MaLR 0 390 69 395 390 52 22 chr11 116210731 116211139 -34572414 + L2 LINE L2 2809 3228 -44 1155 173 118 41 chr11 116211548 116211819 -34571734 + AluJb SINE Alu 2 293 -9 29 0 0 0 chr11 116211824 116211853 -34571700 + AT_rich Low_complexity Low_complexity 1 29 0 389 314 72 20 chr11 116211979 116212438 -34571115 + L1M4 LINE L1 2131 2613 -3533 466 351 94 46 chr11 116212983 116213396 -34570157 + L2 LINE L2 2843 3275 -38 1997 209 86 20 chr11 116213399 116213910 -34569643 - LTR48 LTR ERV1 -2 785 241 184 358 37 37 chr11 116214064 116214173 -34569380 + MIR3 SINE MIR 46 154 -54 982 211 16 0 chr11 116214318 116214503 -34569050 + AluJb SINE Alu 104 291 -21 309 299 23 0 chr11 116214513 116214600 -34568953 + L1MC4 LINE L1 6615 6703 -1339 * 324 289 0 0 chr11 116214570 116214660 -34568893 - L1MC4 LINE L1 -1339 6703 6614 414 272 68 0 chr11 116214717 116214820 -34568733 - MER39 LTR ERV1 -595 112 3 215 333 0 0 chr11 116214832 116214889 -34568664 - L3b LINE CR1 -3 1580 1524 229 176 0 39 chr11 116215006 116215057 -34568496 + GA-rich Low_complexity Low_complexity 2 50 0 29 28 0 0 chr11 116215335 116215371 -34568182 + AT_rich Low_complexity Low_complexity 1 36 0 273 391 32 11 chr11 116215837 116216026 -34567527 + MIR SINE MIR 6 198 -64 306 303 109 66 chr11 116216178 116216646 -34566907 - L2 LINE L2 -1100 2214 1727 381 299 86 16 chr11 116217866 116218110 -34565443 + MIR SINE MIR 2 262 0 27 0 0 0 chr11 116218245 116218272 -34565281 + AT_rich Low_complexity Low_complexity 1 27 0 272 120 20 40 chr11 116218373 116218423 -34565130 - MER39 LTR ERV1 -1 706 658 183 327 96 10 chr11 116218760 116218864 -34564689 - L3 LINE CR1 -103 1474 1362 433 297 117 22 chr11 116218968 116219190 -34564363 - L3 LINE CR1 -244 1333 1091 22 35 0 0 chr11 116219383 116219412 -34564141 + AT_rich Low_complexity Low_complexity 1 29 0 241 180 16 49 chr11 116219715 116219776 -34563777 + (CACCAT)n Simple_repeat Simple_repeat 1 59 0 465 283 13 31 chr11 116219781 116219940 -34563613 - MIR SINE MIR -13 249 94 198 304 174 26 chr11 116220054 116220169 -34563384 - L2 LINE L2 -6 3307 3176 1120 130 12 0 chr11 116221008 116221170 -34562383 + AluSq SINE Alu 87 250 -63 279 366 85 40 chr11 116221270 116221494 -34562059 + L3 LINE CR1 1342 1575 -2 252 347 26 63 chr11 116222156 116222346 -34561207 + MER5A DNA MER1_type 7 189 0 23 0 0 0 chr11 116222577 116222600 -34560953 + AT_rich Low_complexity Low_complexity 1 23 0 837 215 0 2 chr11 116222759 116223019 -34560534 - AluJb SINE Alu -6 306 1 2237 193 20 21 chr11 116223154 116223690 -34559863 - MER39 LTR ERV1 -117 590 1 3288 175 16 58 chr11 116224623 116225310 -34558243 - LTR8 LTR ERV1 0 691 34 239 161 48 0 chr11 116225574 116225636 -34557917 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 1818 187 46 94 chr11 116225751 116225914 -34557639 + LTR49 LTR ERV1 1 170 -425 2181 68 0 0 chr11 116225914 116226193 -34557360 + AluY SINE Alu 1 279 -32 207 0 0 0 chr11 116226196 116226219 -34557334 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1818 187 46 94 chr11 116226219 116226435 -34557118 + LTR49 LTR ERV1 172 325 -270 3030 188 30 62 chr11 116226435 116227181 -34556372 - MER72 LTR ERV1 0 722 1 1818 187 46 94 chr11 116227181 116227409 -34556144 + LTR49 LTR ERV1 325 563 -32 2237 92 0 17 chr11 116227736 116228030 -34555523 + AluY SINE Alu 1 289 -22 2846 161 82 6 chr11 116228325 116228865 -34554688 - MER34C LTR ERV1 0 585 5 341 325 114 0 chr11 116228870 116229036 -34554517 + MLT1L LTR MaLR 183 367 -248 2625 228 38 80 chr11 116229080 116229923 -34553630 + MER21B LTR ERV1 5 812 -51 2225 199 50 87 chr11 116230594 116231311 -34552242 - LTR8 LTR ERV1 0 691 1 3481 149 49 11 chr11 116231870 116232499 -34551054 + MER39B LTR ERV1 1 653 0 264 100 0 0 chr11 116232535 116232575 -34550978 - AluJb SINE Alu -8 294 255 906 211 49 5 chr11 116232575 116232760 -34550793 - AluJb SINE Alu -119 193 1 2556 51 0 13 chr11 116233101 116233416 -34550137 + AluY SINE Alu 1 311 0 204 345 24 55 chr11 116233518 116233683 -34549870 - L3 LINE CR1 -337 1240 1081 2246 53 39 3 chr11 116233829 116234113 -34549440 + AluY SINE Alu 15 308 -3 28 61 0 0 chr11 116234465 116234514 -34549039 + AT_rich Low_complexity Low_complexity 1 49 0 1966 163 53 12 chr11 116234666 116235077 -34548476 - MSTA LTR MaLR 0 428 1 550 321 30 39 chr11 116235510 116235971 -34547582 + L1MEc LINE L1 1366 1822 -4574 2733 262 71 63 chr11 116236268 116236474 -34547079 + L1MB7 LINE L1 16 219 -6323 1561 204 3 10 chr11 116236474 116236778 -34546775 - AluJb SINE Alu -10 302 1 2733 262 71 63 chr11 116236778 116237784 -34545769 + L1MB7 LINE L1 219 1237 -5305 3253 226 58 23 chr11 116237785 116238018 -34545535 + L1MB7 LINE L1 5422 5645 -1037 2304 86 0 26 chr11 116238018 116238322 -34545231 + AluY SINE Alu 1 296 -15 3253 226 58 23 chr11 116238322 116238874 -34544679 + L1MB7 LINE L1 5645 6258 -424 2523 46 0 10 chr11 116238874 116239180 -34544373 + AluY SINE Alu 1 303 -8 3253 226 58 23 chr11 116239180 116239611 -34543942 + L1MB7 LINE L1 6258 6672 -10 3095 280 107 37 chr11 116239637 116240219 -34543334 + L1M4 LINE L1 2615 3155 -3489 2217 107 0 0 chr11 116240219 116240518 -34543035 + AluSq SINE Alu 1 299 -14 3095 280 107 37 chr11 116240518 116241047 -34542506 + L1M4 LINE L1 3155 3645 -2999 1537 194 3 3 chr11 116241047 116241340 -34542213 - AluJo SINE Alu -13 299 7 3095 280 107 37 chr11 116241340 116243122 -34540431 + L1M4 LINE L1 3645 5680 -964 1607 160 28 14 chr11 116243182 116243470 -34540083 + AluJo SINE Alu 1 292 -20 236 229 72 48 chr11 116243615 116243698 -34539855 - MER94 DNA DNA -9 125 41 50 31 0 0 chr11 116243700 116243764 -34539789 + AT_rich Low_complexity Low_complexity 1 64 0 278 289 123 60 chr11 116243806 116244090 -34539463 - L3 LINE CR1 -535 1042 741 670 216 85 116 chr11 116244382 116244641 -34538912 + MIR SINE MIR 2 252 -10 340 339 38 31 chr11 116244673 116244969 -34538584 - MLT1J LTR MaLR -144 367 27 1936 115 47 0 chr11 116245196 116245475 -34538078 - AluY SINE Alu -19 292 1 2105 125 3 13 chr11 116246122 116246434 -34537119 - AluSx SINE Alu -3 309 1 1350 182 88 32 chr11 116247432 116247870 -34535683 - LTR54 LTR ERV1 -9 489 1 1134 50 0 0 chr11 116249060 116249199 -34534354 + L1PA3 LINE L1 6014 6152 -3 370 303 86 7 chr11 116249592 116249744 -34533809 + MIR SINE MIR 50 213 -49 205 185 12 49 chr11 116250384 116250465 -34533088 + (TA)n Simple_repeat Simple_repeat 2 79 0 480 231 0 32 chr11 116250478 116250664 -34532889 + (TA)n Simple_repeat Simple_repeat 1 180 0 1284 239 104 5 chr11 116250724 116251139 -34532414 + Charlie7 DNA MER1_type 726 1181 -1431 536 280 131 24 chr11 116251721 116252186 -34531367 + Charlie7 DNA MER1_type 1181 1695 -917 25 31 0 0 chr11 116252213 116252245 -34531308 + AT_rich Low_complexity Low_complexity 1 32 0 2131 244 101 30 chr11 116252381 116253501 -34530052 + L1ME1 LINE L1 4963 6158 -8 432 266 31 10 chr11 116253530 116253722 -34529831 + L1MEc LINE L1 2108 2303 -4093 * 723 56 0 0 chr11 116253718 116253807 -34529746 - L1PA6 LINE L1 -258 5896 5808 2023 96 0 0 chr11 116253807 116254087 -34529466 + L1PA7 LINE L1 5862 6141 -13 2210 288 90 17 chr11 116254089 116255519 -34528034 + L1MEc LINE L1 2243 3885 -2330 326 164 213 8 chr11 116255534 116255656 -34527897 + L1M4 LINE L1 5160 5306 -840 2859 193 26 23 chr11 116255657 116256176 -34527377 + L1MC3 LINE L1 7159 7682 -103 6301 132 59 32 chr11 116256176 116257115 -34526438 + Tigger3b DNA MER2_type 1 982 -2046 2523 52 3 0 chr11 116257115 116257423 -34526130 - AluY SINE Alu 0 311 3 6301 132 59 32 chr11 116257423 116257681 -34525872 + Tigger3b DNA MER2_type 982 1231 0 2859 193 26 23 chr11 116257681 116257778 -34525775 + L1MC3 LINE L1 7682 7777 -8 282 274 28 38 chr11 116257846 116257952 -34525601 - L1ME4a LINE L1 -71 6050 5946 1905 125 51 3 chr11 116258051 116258347 -34525206 - AluJb SINE Alu -2 310 1 24 85 0 0 chr11 116258466 116258525 -34525028 + AT_rich Low_complexity Low_complexity 1 59 0 4219 159 20 25 chr11 116258797 116259926 -34523627 - L1MA5A LINE L1 -282 6015 4893 275 232 165 26 chr11 116260180 116260374 -34523179 - L1ME4a LINE L1 -244 5877 5657 316 283 50 25 chr11 116260544 116260664 -34522889 - L1ME4a LINE L1 -687 5434 5312 21 0 0 0 chr11 116260721 116260742 -34522811 + AT_rich Low_complexity Low_complexity 1 21 0 341 206 0 0 chr11 116261758 116261821 -34521732 + MLT1B LTR MaLR 328 390 0 518 328 46 5 chr11 116262007 116262202 -34521351 - L3 LINE CR1 -814 763 561 2084 113 13 7 chr11 116263847 116264147 -34519406 + AluSx SINE Alu 1 302 -10 225 65 0 0 chr11 116264974 116265005 -34518548 + (CA)n Simple_repeat Simple_repeat 2 32 0 225 254 0 0 chr11 116267400 116267471 -34516082 + (TA)n Simple_repeat Simple_repeat 2 72 0 365 71 36 0 chr11 116267654 116267710 -34515843 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 449 355 94 25 chr11 116267719 116268167 -34515386 - L1MC/D LINE L1 -2075 5733 5255 1856 242 36 7 chr11 116268374 116268924 -34514629 + L1M4 LINE L1 2163 2728 -3418 616 163 54 0 chr11 116268921 116269050 -34514503 + L1MC3 LINE L1 7649 7784 -1 * 21 0 0 0 chr11 116269140 116269161 -34514392 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr11 116269285 116269341 -34514212 + AT_rich Low_complexity Low_complexity 1 56 0 2298 162 36 12 chr11 116269364 116269783 -34513770 + MSTB1 LTR MaLR 1 429 -3 360 200 0 0 chr11 116270917 116270997 -34512556 + CT-rich Low_complexity Low_complexity 2 81 0 538 332 127 27 chr11 116272446 116273070 -34510483 + L2 LINE L2 1815 2500 -814 267 279 89 58 chr11 116273129 116273319 -34510234 + Charlie7 DNA MER1_type 99 294 -2318 1125 248 108 37 chr11 116273336 116274179 -34509374 + Charlie7 DNA MER1_type 1428 2358 -254 204 190 35 0 chr11 116274361 116274419 -34509134 + (TA)n Simple_repeat Simple_repeat 2 61 0 2184 119 3 0 chr11 116274829 116275131 -34508422 - AluSx SINE Alu -9 303 1 372 143 0 0 chr11 116276402 116276472 -34507081 + (TCCC)n Simple_repeat Simple_repeat 1 70 0 1881 143 7 0 chr11 116276472 116276759 -34506794 - AluSq SINE Alu -24 289 1 428 289 56 44 chr11 116276976 116277156 -34506397 + MIR SINE MIR 20 201 -61 1948 112 3 13 chr11 116277537 116277842 -34505711 - AluY SINE Alu -8 303 2 3630 242 73 29 chr11 116279066 116279573 -34503980 + L1MC3 LINE L1 6447 6930 -855 2553 91 101 0 chr11 116279573 116279969 -34503584 + L1PA13 LINE L1 5723 6158 -5 3630 242 73 29 chr11 116279969 116280743 -34502810 + L1MC3 LINE L1 6930 7785 0 185 313 15 15 chr11 116281223 116281290 -34502263 - MIR SINE MIR -148 114 48 276 325 155 39 chr11 116281436 116281642 -34501911 + MIR SINE MIR 23 252 -10 220 317 73 0 chr11 116281661 116281743 -34501810 + L2 LINE L2 3214 3301 -12 265 186 17 25 chr11 116281747 116281865 -34501688 + (TA)n Simple_repeat Simple_repeat 2 118 0 312 137 0 0 chr11 116284475 116284526 -34499027 + (T)n Simple_repeat Simple_repeat 1 51 0 180 158 0 0 chr11 116286245 116286283 -34497270 + T-rich Low_complexity Low_complexity 3 40 0 23 33 0 0 chr11 116287687 116287717 -34495836 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr11 116287804 116287842 -34495711 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr11 116288016 116288046 -34495507 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr11 116289252 116289275 -34494278 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr11 116290181 116290210 -34493343 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr11 116290743 116290780 -34492773 + AT_rich Low_complexity Low_complexity 1 37 0 201 196 0 0 chr11 116290873 116290924 -34492629 + (TA)n Simple_repeat Simple_repeat 1 51 0 338 287 83 65 chr11 116291346 116291576 -34491977 - L2 LINE L2 0 3313 3080 603 345 102 40 chr11 116291665 116292624 -34490929 - L2 LINE L2 -337 2977 1959 253 311 193 0 chr11 116292818 116292953 -34490600 + MIR SINE MIR 28 188 -74 34 42 0 0 chr11 116293047 116293095 -34490458 + AT_rich Low_complexity Low_complexity 1 48 0 431 284 26 32 chr11 116293732 116293887 -34489666 + L2 LINE L2 1863 2016 -1298 669 334 83 5 chr11 116295181 116295567 -34487986 - L1MC4a LINE L1 -1976 5832 5417 303 306 59 33 chr11 116295663 116295934 -34487619 - L1MC4a LINE L1 -859 5287 5010 346 292 66 116 chr11 116296186 116296323 -34487230 + L2 LINE L2 2469 2611 -703 2914 169 27 6 chr11 116296323 116296690 -34486863 - L1PB4 LINE L1 0 6156 5772 342 0 0 0 chr11 116296690 116296728 -34486825 + (TA)n Simple_repeat Simple_repeat 1 38 0 2914 169 27 6 chr11 116296728 116296910 -34486643 - L1PB4 LINE L1 -384 5772 5595 346 292 66 116 chr11 116296910 116297179 -34486374 + L2 LINE L2 2611 2855 -459 521 309 66 58 chr11 116297208 116297586 -34485967 + L2 LINE L2 2933 3313 0 204 169 68 0 chr11 116298531 116298590 -34484963 + (TA)n Simple_repeat Simple_repeat 1 63 0 182 157 0 39 chr11 116298751 116298802 -34484751 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 221 372 43 0 chr11 116298804 116298898 -34484655 + L2 LINE L2 3138 3235 -37 352 299 68 124 chr11 116299011 116299479 -34484074 - L3 LINE CR1 -269 1308 867 216 97 0 0 chr11 116299894 116299925 -34483628 + (CA)n Simple_repeat Simple_repeat 1 31 0 303 294 157 24 chr11 116299941 116300189 -34483364 + L1MC/D LINE L1 5315 5595 -2213 21 36 0 0 chr11 116300411 116300439 -34483114 + AT_rich Low_complexity Low_complexity 1 28 0 246 32 0 0 chr11 116301723 116301754 -34481799 + (CA)n Simple_repeat Simple_repeat 2 32 0 2096 112 83 9 chr11 116302006 116302355 -34481198 + THE1C LTR MaLR 1 375 0 753 80 0 0 chr11 116302557 116302657 -34480896 + L1P LINE L1 4226 4325 -1821 875 144 72 41 chr11 116302675 116302869 -34480684 + AluJo SINE Alu 83 282 -30 410 36 18 0 chr11 116302874 116302930 -34480623 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 249 299 142 88 chr11 116303696 116303900 -34479653 + L2 LINE L2 3026 3240 -32 2090 126 3 0 chr11 116303920 116304221 -34479332 + AluSg SINE Alu 1 302 -8 46 19 0 0 chr11 116304324 116304377 -34479176 + AT_rich Low_complexity Low_complexity 1 53 0 409 293 30 30 chr11 116306090 116306223 -34477330 + MIR SINE MIR 20 152 -110 645 196 30 8 chr11 116306291 116306424 -34477129 + AluJo SINE Alu 1 136 -176 270 306 105 57 chr11 116306985 116307109 -34476444 + L2 LINE L2 3123 3252 -20 405 283 35 9 chr11 116307570 116307683 -34475870 + MIR SINE MIR 66 181 -81 2079 127 0 19 chr11 116307703 116308189 -34475364 + AluSg SINE Alu 1 480 0 22 35 0 0 chr11 116310948 116310977 -34472576 + AT_rich Low_complexity Low_complexity 1 29 0 394 368 24 0 chr11 116311108 116311274 -34472279 - L2 LINE L2 -15 3298 3129 272 86 52 17 chr11 116311588 116311646 -34471907 - L1MA8 LINE L1 0 6291 6232 279 79 0 0 chr11 116312165 116312203 -34471350 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr11 116313972 116313995 -34469558 + AT_rich Low_complexity Low_complexity 1 23 0 250 301 97 0 chr11 116314326 116314419 -34469134 - L1ME LINE L1 -515 5606 5505 2279 139 40 8 chr11 116315440 116315861 -34467692 - MLT1B LTR MaLR 0 467 1 243 0 0 0 chr11 116316174 116316201 -34467352 + (A)n Simple_repeat Simple_repeat 1 27 0 2451 110 28 3 chr11 116316473 116316837 -34466716 - THE1C LTR MaLR -2 373 1 410 349 42 34 chr11 116316943 116317207 -34466346 - L3 LINE CR1 -911 666 401 2054 133 0 0 chr11 116317354 116317656 -34465897 - AluSx SINE Alu -10 302 1 1625 164 3 43 chr11 116317947 116318246 -34465307 + AluSx SINE Alu 1 287 -25 30 0 0 0 chr11 116318247 116318277 -34465276 + AT_rich Low_complexity Low_complexity 1 30 0 256 335 65 29 chr11 116319550 116319890 -34463663 + HAL1b LINE L1 313 664 -684 779 153 15 0 chr11 116319953 116320084 -34463469 + AluJo SINE Alu 5 137 -175 5226 130 16 19 chr11 116320091 116321462 -34462091 + L1PA13 LINE L1 4670 6023 -140 766 191 0 0 chr11 116321462 116321593 -34461960 + AluJb SINE Alu 149 279 -33 297 0 0 0 chr11 116321597 116321630 -34461923 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr11 116321700 116321728 -34461825 + AT_rich Low_complexity Low_complexity 1 28 0 42 71 0 0 chr11 116322019 116322103 -34461450 + AT_rich Low_complexity Low_complexity 1 84 0 203 332 5 15 chr11 116322188 116322324 -34461229 + GA-rich Low_complexity Low_complexity 3 189 0 401 319 126 25 chr11 116322332 116322425 -34461128 - MIR SINE MIR 0 262 180 477 76 0 130 chr11 116322425 116322517 -34461036 + MADE1 DNA Mariner 1 80 0 401 319 126 25 chr11 116322517 116322661 -34460892 - MIR SINE MIR -82 180 1 270 330 9 0 chr11 116323312 116323418 -34460135 + L1ME4a LINE L1 5517 5623 -498 346 266 31 87 chr11 116323459 116323688 -34459865 + L1ME4a LINE L1 5706 5921 -200 22 0 0 0 chr11 116324095 116324117 -34459436 + AT_rich Low_complexity Low_complexity 1 22 0 292 279 44 104 chr11 116324230 116324413 -34459140 - MER5A DNA MER1_type -1 188 17 211 256 256 12 chr11 116324973 116325059 -34458494 + MER5A DNA MER1_type 7 113 -76 488 213 0 21 chr11 116326362 116326456 -34457097 - Tigger7 DNA MER2_type -3 2488 2397 * 2215 224 71 8 chr11 116326447 116326533 -34457020 - Tigger7 DNA MER2_type -1961 526 447 2263 89 0 13 chr11 116326533 116326848 -34456705 - AluY SINE Alu 0 311 1 2215 224 71 8 chr11 116326848 116327256 -34456297 - Tigger7 DNA MER2_type -2040 447 1 194 325 52 13 chr11 116327414 116327491 -34456062 - L2 LINE L2 -215 3057 2978 1522 159 102 125 chr11 116327587 116328060 -34455493 + L1MA8 LINE L1 5762 6223 -68 21 36 0 0 chr11 116328060 116328088 -34455465 + AT_rich Low_complexity Low_complexity 1 28 0 6837 65 12 0 chr11 116328977 116329866 -34453687 - L1PA7 LINE L1 0 6154 5255 2841 86 2 5 chr11 116329865 116330273 -34453280 + L1PA7 LINE L1 4847 5253 -893 * 790 81 9 0 chr11 116330907 116331018 -34452535 + L1PB1 LINE L1 6039 6150 -1 22 56 0 0 chr11 116331041 116331077 -34452476 + AT_rich Low_complexity Low_complexity 1 36 0 380 183 49 0 chr11 116331512 116331594 -34451959 + L1MC1 LINE L1 6248 6333 0 518 331 124 8 chr11 116332926 116333298 -34450255 + MLT1L LTR MaLR 194 608 -7 790 287 135 50 chr11 116333301 116334152 -34449401 + HAL1 LINE L1 745 1667 -840 411 271 46 95 chr11 116335014 116335402 -34448151 + L1MC5 LINE L1 7498 7866 -95 273 29 0 0 chr11 116335629 116335663 -34447890 + (TG)n Simple_repeat Simple_repeat 1 34 0 336 333 40 8 chr11 116335870 116335996 -34447557 - MIR SINE MIR -120 142 13 24 32 0 0 chr11 116336883 116336914 -34446639 + AT_rich Low_complexity Low_complexity 1 31 0 370 330 89 92 chr11 116336985 116337333 -34446220 - L2 LINE L2 0 3272 2926 198 289 48 48 chr11 116337618 116337722 -34445831 + MIR SINE MIR 146 249 -13 * 247 283 104 28 chr11 116337713 116337819 -34445734 - L2 LINE L2 -10 3303 3190 290 316 126 59 chr11 116337826 116338162 -34445391 - L2 LINE L2 -255 3058 2684 494 320 87 0 chr11 116338890 116339096 -34444457 - MIR SINE MIR -27 235 12 25 31 0 0 chr11 116339838 116339870 -34443683 + AT_rich Low_complexity Low_complexity 1 32 0 27 73 0 0 chr11 116340209 116340264 -34443289 + AT_rich Low_complexity Low_complexity 1 55 0 2476 159 36 38 chr11 116341308 116341830 -34441723 - L1MA9 LINE L1 0 6312 5792 195 42 0 0 chr11 116341830 116341854 -34441699 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 258 0 47 23 chr11 116341853 116341896 -34441657 + (TA)n Simple_repeat Simple_repeat 2 45 0 1701 185 3 16 chr11 116341994 116342308 -34441245 - L1MA9 LINE L1 -517 5795 5486 368 113 0 0 chr11 116342308 116342370 -34441183 - Alu SINE Alu 0 300 239 349 188 45 68 chr11 116342370 116342523 -34441030 - L1MA9 LINE L1 -911 5235 5085 311 333 143 34 chr11 116342543 116342955 -34440598 + L2 LINE L2 2256 2712 -602 24 0 0 0 chr11 116343716 116343740 -34439813 + AT_rich Low_complexity Low_complexity 1 24 0 1942 206 53 25 chr11 116344398 116344887 -34438666 - MLT1D LTR MaLR 0 505 3 2349 103 0 3 chr11 116345030 116345340 -34438213 + AluSx SINE Alu 1 309 -3 312 288 24 40 chr11 116345475 116345600 -34437953 + MER5A DNA MER1_type 57 179 -10 23 0 0 0 chr11 116345785 116345808 -34437745 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr11 116346540 116346573 -34436980 + AT_rich Low_complexity Low_complexity 1 33 0 223 359 21 47 chr11 116346596 116346788 -34436765 + L2 LINE L2 2684 2870 -444 33 0 0 0 chr11 116347412 116347445 -34436108 + AT_rich Low_complexity Low_complexity 1 33 0 226 355 21 0 chr11 116349650 116349743 -34433810 - L2 LINE L2 0 3313 3219 328 318 66 40 chr11 116349811 116350085 -34433468 + L1MC/D LINE L1 5528 5808 -2000 21 36 0 0 chr11 116350694 116350722 -34432831 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 116350788 116350810 -34432743 + AT_rich Low_complexity Low_complexity 1 22 0 465 338 7 35 chr11 116351563 116351708 -34431845 + L2 LINE L2 3127 3267 -5 1693 242 49 3 chr11 116352647 116353032 -34430521 - MLT2D LTR ERVL -8 406 4 6143 178 61 16 chr11 116353034 116354241 -34429312 - ERVL-D LTR ERVL -7 5757 4496 334 266 110 9 chr11 116355119 116355181 -34428372 + L2 LINE L2 3191 3245 -68 1270 193 65 10 chr11 116355181 116355396 -34428157 + MER33 DNA MER1_type 1 203 -2382 1837 148 11 0 chr11 116355396 116355674 -34427879 + AluSx SINE Alu 1 281 -31 213 39 0 0 chr11 116355677 116355703 -34427850 + (TAA)n Simple_repeat Simple_repeat 3 28 0 1270 193 65 10 chr11 116355703 116355789 -34427764 + MER33 DNA MER1_type 204 323 -1 334 266 110 9 chr11 116355789 116355835 -34427718 + L2 LINE L2 3245 3310 -3 861 212 36 0 chr11 116355852 116356017 -34427536 - FAM SINE Alu -1 174 4 31 26 0 0 chr11 116356915 116356953 -34426600 + AT_rich Low_complexity Low_complexity 1 38 0 2115 103 7 0 chr11 116357519 116357809 -34425744 - AluSx SINE Alu -20 292 1 331 154 32 8 chr11 116358168 116358291 -34425262 + (TA)n Simple_repeat Simple_repeat 2 127 0 609 133 0 0 chr11 116358751 116358849 -34424704 + (GGGA)n Simple_repeat Simple_repeat 4 101 0 5527 158 20 3 chr11 116360315 116361422 -34422131 - L1PA16 LINE L1 -1 6165 5048 399 138 0 0 chr11 116362362 116362449 -34421104 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 2213 55 0 17 chr11 116362528 116362849 -34420704 + AluY SINE Alu 1 316 0 265 348 34 0 chr11 116362865 116362983 -34420570 - L2 LINE L2 0 3313 3192 267 298 105 16 chr11 116363149 116363273 -34420280 - L2 LINE L2 -245 3068 2934 494 158 12 0 chr11 116365771 116365853 -34417700 + MIR SINE MIR 113 195 -67 2166 114 7 0 chr11 116365907 116366215 -34417338 + AluSq SINE Alu 1 310 -3 198 209 0 0 chr11 116366373 116366416 -34417137 + (ATG)n Simple_repeat Simple_repeat 2 44 0 195 308 77 0 chr11 116366422 116366500 -34417053 - MIR SINE MIR 0 262 179 706 233 171 0 chr11 116368016 116368192 -34415361 + MER58A DNA MER1_type 1 206 -18 937 174 54 63 chr11 116368356 116368398 -34415155 - Charlie5 DNA MER1_type -44 2580 2539 2175 99 3 3 chr11 116368398 116368691 -34414862 - AluSc SINE Alu -16 293 1 937 174 54 63 chr11 116368691 116368964 -34414589 - Charlie5 DNA MER1_type -85 2539 2268 422 114 0 14 chr11 116369029 116369099 -34414454 - MER3 DNA MER1_type -47 162 94 263 341 122 16 chr11 116369212 116369335 -34414218 - MIR3 SINE MIR -71 137 2 585 100 0 0 chr11 116369678 116369768 -34413785 + (TG)n Simple_repeat Simple_repeat 2 91 0 224 336 29 19 chr11 116370569 116370673 -34412880 + L2 LINE L2 3208 3312 -1 23 0 0 0 chr11 116370791 116370814 -34412739 + AT_rich Low_complexity Low_complexity 1 23 0 2049 138 3 3 chr11 116371011 116371308 -34412245 - AluSx SINE Alu -15 297 1 181 254 14 70 chr11 116371897 116371968 -34411585 - L2 LINE L2 0 3313 3247 21 36 0 0 chr11 116372453 116372481 -34411072 + AT_rich Low_complexity Low_complexity 1 28 0 298 253 11 63 chr11 116373407 116373502 -34410051 - L2 LINE L2 0 3313 3224 261 288 106 38 chr11 116373770 116373902 -34409651 + L2 LINE L2 3124 3264 -49 1220 240 66 53 chr11 116373908 116374287 -34409266 + L2 LINE L2 2930 3313 0 591 321 83 14 chr11 116374843 116375120 -34408433 + L2 LINE L2 2411 2706 -608 317 325 12 0 chr11 116375487 116375570 -34407983 + L2 LINE L2 3189 3272 0 1368 158 69 20 chr11 116376197 116376444 -34407109 - AluJo SINE Alu -30 282 24 25 0 0 0 chr11 116376524 116376549 -34407004 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr11 116376683 116376707 -34406846 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr11 116376781 116376816 -34406737 + AT_rich Low_complexity Low_complexity 1 35 0 279 262 0 0 chr11 116376850 116376911 -34406642 - MIR SINE MIR -22 240 180 1927 157 7 0 chr11 116376929 116377228 -34406325 - AluSx SINE Alu 0 312 12 193 324 15 15 chr11 116377228 116377296 -34406257 - MIR SINE MIR -150 112 45 309 346 47 61 chr11 116378501 116378715 -34404838 - L2 LINE L2 -191 3081 2871 1950 280 53 35 chr11 116378898 116380386 -34403167 + L1MC4a LINE L1 4377 5344 -802 4049 209 101 83 chr11 116382448 116383910 -34399643 + L1MC4a LINE L1 5904 7390 -418 28 48 0 0 chr11 116384320 116384362 -34399191 + AT_rich Low_complexity Low_complexity 1 42 0 251 241 112 102 chr11 116384865 116385052 -34398501 + MIR SINE MIR 20 208 -54 27 0 0 0 chr11 116385433 116385460 -34398093 + AT_rich Low_complexity Low_complexity 1 27 0 510 46 0 0 chr11 116385460 116385525 -34398028 - L1PA4 LINE L1 -172 5983 5919 1240 57 0 0 chr11 116385525 116385680 -34397873 + L1PA4 LINE L1 5994 6152 -3 293 288 78 61 chr11 116386039 116386237 -34397316 + MIR SINE MIR 34 246 -16 26 109 0 0 chr11 116386274 116386384 -34397169 + AT_rich Low_complexity Low_complexity 1 110 0 273 20 0 61 chr11 116386917 116386966 -34396587 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr11 116387313 116387335 -34396218 + AT_rich Low_complexity Low_complexity 1 22 0 1800 160 7 0 chr11 116387344 116387637 -34395916 + AluSx SINE Alu 1 295 -17 34 84 0 0 chr11 116388439 116388522 -34395031 + AT_rich Low_complexity Low_complexity 1 83 0 216 67 0 0 chr11 116389048 116389078 -34394475 + (TG)n Simple_repeat Simple_repeat 2 31 0 437 304 130 9 chr11 116389991 116390221 -34393332 - MLT1J2 LTR MaLR -114 336 79 1507 11 0 6 chr11 116391947 116392124 -34391429 - L1PA3 LINE L1 0 6155 5980 997 98 0 13 chr11 116392124 116392277 -34391276 + L1PA2 LINE L1 5795 5945 -210 489 301 138 35 chr11 116394402 116394828 -34388725 + Charlie8 DNA MER1_type 85 554 -1863 256 196 0 18 chr11 116396426 116396482 -34387071 + Tigger5 DNA MER2_type 1 55 -2268 * 376 248 38 0 chr11 116396474 116396579 -34386974 + Tigger5 DNA MER2_type 2215 2323 0 462 196 0 21 chr11 116396622 116396719 -34386834 + Tigger5 DNA MER2_type 2229 2323 0 263 343 10 2 chr11 116396796 116396903 -34386650 - L1ME LINE L1 -551 5573 5461 26 0 0 0 chr11 116397622 116397648 -34385905 + AT_rich Low_complexity Low_complexity 1 26 0 2310 149 67 52 chr11 116398057 116398568 -34384985 + L1PB4 LINE L1 5264 5785 -371 195 114 0 0 chr11 116398568 116398603 -34384950 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 2310 149 67 52 chr11 116398603 116398615 -34384938 + L1PB4 LINE L1 5785 5795 -361 195 204 0 0 chr11 116398622 116398666 -34384887 + (CA)n Simple_repeat Simple_repeat 2 45 0 1816 182 11 25 chr11 116398666 116399029 -34384524 + L1PB4 LINE L1 5789 6146 -10 616 244 90 13 chr11 116399191 116399347 -34384206 + MIR SINE MIR 18 185 -77 448 272 47 31 chr11 116399459 116399650 -34383903 - LTR67 LTR ERVL -14 543 350 29581 117 16 58 chr11 116399841 116406273 -34377280 + L1PA7 LINE L1 6 6153 -1 458 218 37 75 chr11 116406816 116406994 -34376559 - LTR41 LTR ERVL -608 187 1 * 466 320 33 0 chr11 116406994 116407136 -34376417 - LTR67 LTR ERVL -408 149 3 2017 121 10 3 chr11 116407690 116407988 -34375565 - AluSg SINE Alu -10 300 1 1305 106 11 0 chr11 116408089 116408269 -34375284 + AluSg/x SINE Alu 113 294 -16 3764 29 0 0 chr11 116408338 116408784 -34374769 - L1PA4 LINE L1 -3 6152 5707 1801 71 0 111 chr11 116408784 116409094 -34374459 + L1P LINE L1 4435 4611 -1535 913 0 0 9 chr11 116409094 116409197 -34374356 + L1PA2 LINE L1 6048 6153 -2 1801 71 0 111 chr11 116409197 116409331 -34374222 + L1P LINE L1 4611 4758 -1388 21 71 0 0 chr11 116410140 116410182 -34373371 + AT_rich Low_complexity Low_complexity 1 42 0 219 69 0 0 chr11 116412486 116412515 -34371038 + (CATA)n Simple_repeat Simple_repeat 2 30 0 426 39 0 0 chr11 116413295 116413347 -34370206 + (TG)n Simple_repeat Simple_repeat 1 52 0 512 295 49 33 chr11 116413534 116413717 -34369836 + MIR SINE MIR 41 226 -36 288 290 43 21 chr11 116414444 116414537 -34369016 - MER5A DNA MER1_type -78 111 17 276 252 7 34 chr11 116414546 116414692 -34368861 - MIR SINE MIR 0 262 20 185 319 150 18 chr11 116414742 116414855 -34368698 + MIR SINE MIR 105 232 -30 2034 125 6 3 chr11 116415415 116415726 -34367827 + AluSx SINE Alu 1 312 0 492 365 58 23 chr11 116415830 116416172 -34367381 + L2 LINE L2 2514 2867 -447 247 283 120 11 chr11 116416371 116416463 -34367090 + L2 LINE L2 3208 3309 -4 21 89 0 0 chr11 116416840 116416896 -34366657 + AT_rich Low_complexity Low_complexity 1 56 0 288 352 0 0 chr11 116417172 116417260 -34366293 + MIR3 SINE MIR 88 175 -33 541 314 20 48 chr11 116417541 116417789 -34365764 + MER102b DNA MER1_type 79 319 -22 335 360 50 22 chr11 116419283 116419505 -34364048 + MIR SINE MIR 22 249 -13 362 306 14 83 chr11 116419831 116419975 -34363578 - L2 LINE L2 -5 3267 3134 189 94 0 0 chr11 116420421 116420453 -34363100 + (A)n Simple_repeat Simple_repeat 1 32 0 209 194 0 0 chr11 116420505 116420541 -34363012 + CT-rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr11 116420700 116420730 -34362823 + AT_rich Low_complexity Low_complexity 1 30 0 189 94 0 0 chr11 116420745 116420777 -34362776 + (A)n Simple_repeat Simple_repeat 1 32 0 736 324 152 23 chr11 116422268 116423440 -34360113 - L2 LINE L2 -2 3311 1983 247 174 116 43 chr11 116423598 116423667 -34359886 - L1MA9 LINE L1 -38 6274 6201 * 792 198 109 0 chr11 116423642 116423847 -34359706 + L1MA9 LINE L1 5935 6167 -1 259 336 17 50 chr11 116423868 116423987 -34359566 - L2 LINE L2 -2 3311 3197 209 331 70 6 chr11 116424206 116424363 -34359190 + L2 LINE L2 1528 1694 -1620 249 289 0 0 chr11 116424367 116424464 -34359089 + (TA)n Simple_repeat Simple_repeat 1 97 0 1829 125 0 0 chr11 116424599 116424855 -34358698 - AluSx SINE Alu -43 269 14 378 307 67 109 chr11 116425405 116425884 -34357669 + L2 LINE L2 2231 2689 -625 276 352 57 69 chr11 116425885 116426132 -34357421 + L2 LINE L2 3029 3272 0 197 108 27 0 chr11 116426989 116427026 -34356527 + (TAA)n Simple_repeat Simple_repeat 2 39 0 962 320 28 51 chr11 116428689 116429261 -34354292 + L1MEd LINE L1 280 838 -5281 366 245 56 73 chr11 116429491 116429724 -34353829 + L1ME LINE L1 5531 5759 -362 374 248 78 0 chr11 116429868 116429984 -34353569 - MLT1G1 LTR MaLR -13 582 406 837 251 126 69 chr11 116430043 116430212 -34353341 - MLT1G1 LTR MaLR -232 363 205 2121 84 7 17 chr11 116430212 116430511 -34353042 - AluSq SINE Alu -17 296 1 837 251 126 69 chr11 116430511 116430675 -34352878 - MLT1G1 LTR MaLR -390 205 11 502 342 169 13 chr11 116430696 116431292 -34352261 - L2 LINE L2 -1018 2296 1608 24 0 0 0 chr11 116432418 116432442 -34351111 + AT_rich Low_complexity Low_complexity 1 24 0 3540 199 83 27 chr11 116435296 116436107 -34347446 - MER21B LTR ERV1 -2 861 6 2638 174 13 66 chr11 116437399 116437932 -34345621 + MLT2B1 LTR ERVL 1 505 -15 25 65 0 0 chr11 116439742 116439788 -34343765 + AT_rich Low_complexity Low_complexity 1 46 0 1591 188 4 4 chr11 116439788 116440064 -34343489 + AluJo SINE Alu 1 276 -36 248 328 0 0 chr11 116440794 116440861 -34342692 + MIR SINE MIR 45 111 -151 387 350 133 54 chr11 116441214 116441734 -34341819 + L2 LINE L2 2704 3272 0 233 373 121 16 chr11 116441731 116442184 -34341369 + L2 LINE L2 2194 2694 -620 * 248 350 35 22 chr11 116442264 116442490 -34341063 - L1M4 LINE L1 -2481 3665 3437 522 309 52 73 chr11 116442542 116443119 -34340434 - L1M4 LINE L1 -3344 2802 2238 410 219 123 62 chr11 116443147 116443293 -34340260 - MIR SINE MIR -48 214 60 1003 227 0 46 chr11 116443293 116443308 -34340245 - MER58 DNA MER1_type -82 259 245 198 0 0 0 chr11 116443308 116443330 -34340223 + (CAACT)n Simple_repeat Simple_repeat 5 26 0 1003 227 0 46 chr11 116443330 116443574 -34339979 - MER58 DNA MER1_type -96 245 12 2129 128 0 0 chr11 116443770 116444067 -34339486 - AluSx SINE Alu -15 297 1 2202 94 80 6 chr11 116444306 116444645 -34338908 + THE1B LTR MaLR 1 364 0 194 0 0 37 chr11 116445861 116445888 -34337665 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1530 87 0 19 chr11 116445891 116446097 -34337456 - AluSc SINE Alu -23 286 85 820 224 46 27 chr11 116447378 116447597 -34335956 + MER58A DNA MER1_type 1 223 -1 639 298 117 29 chr11 116448435 116448870 -34334683 + L2 LINE L2 2716 3308 -5 720 298 36 0 chr11 116449389 116449641 -34333912 - MIR SINE MIR 0 262 2 224 260 135 19 chr11 116450847 116450951 -34332602 + L2 LINE L2 3152 3267 -5 251 317 151 35 chr11 116451014 116451273 -34332280 - L2 LINE L2 -171 3101 2813 248 259 0 0 chr11 116453350 116453408 -34330145 + L1MC4 LINE L1 7815 7872 -170 3983 150 72 0 chr11 116453429 116454123 -34329430 + Tigger2 DNA MER2_type 1 744 -1974 538 176 59 3 chr11 116454187 116454382 -34329171 + Tigger2 DNA MER2_type 2459 2718 0 231 88 0 0 chr11 116454402 116454436 -34329117 + (CA)n Simple_repeat Simple_repeat 1 34 0 247 248 10 50 chr11 116454468 116454569 -34328984 + L1MC4 LINE L1 7946 8042 0 460 281 20 54 chr11 116454571 116454774 -34328779 + L1M4 LINE L1 2959 3154 -2992 200 189 0 0 chr11 116454836 116454873 -34328680 + CT-rich Low_complexity Low_complexity 3 39 0 429 296 124 49 chr11 116455658 116456208 -34327345 + L1ME LINE L1 2574 3164 -2982 21 0 0 0 chr11 116456373 116456394 -34327159 + AT_rich Low_complexity Low_complexity 1 21 0 1845 228 40 20 chr11 116456608 116457103 -34326450 - MLT1D LTR MaLR 0 505 1 303 380 141 13 chr11 116457343 116457725 -34325828 + L1ME LINE L1 5268 5698 -423 28 0 0 0 chr11 116457729 116457757 -34325796 + AT_rich Low_complexity Low_complexity 1 28 0 281 338 0 0 chr11 116457840 116457920 -34325633 - MIR SINE MIR -109 153 74 316 289 22 0 chr11 116458268 116458358 -34325195 + MIR SINE MIR 157 248 -14 203 152 0 0 chr11 116458794 116458827 -34324726 + (CA)n Simple_repeat Simple_repeat 1 33 0 299 195 81 65 chr11 116458863 116458986 -34324567 + L1ME4a LINE L1 5997 6121 0 746 65 19 0 chr11 116460167 116460275 -34323278 + AluSq/x SINE Alu 1 110 -202 216 97 0 0 chr11 116460385 116460416 -34323137 + (A)n Simple_repeat Simple_repeat 1 31 0 226 349 55 41 chr11 116460744 116460890 -34322663 - L2 LINE L2 0 3272 3125 27 0 0 0 chr11 116461461 116461488 -34322065 + AT_rich Low_complexity Low_complexity 1 27 0 258 195 0 0 chr11 116461862 116461903 -34321650 - FAM SINE Alu -18 161 121 3003 162 16 9 chr11 116462564 116463119 -34320434 + L1PB4 LINE L1 5469 6027 -129 195 246 88 0 chr11 116463934 116463991 -34319562 + MIR SINE MIR 81 142 -66 27 29 0 0 chr11 116466774 116466808 -34316745 + AT_rich Low_complexity Low_complexity 1 34 0 220 351 117 0 chr11 116467451 116467545 -34316008 - L2 LINE L2 -9 3263 3159 219 36 0 0 chr11 116468735 116468763 -34314790 + (T)n Simple_repeat Simple_repeat 1 28 0 204 205 26 0 chr11 116468796 116468835 -34314718 + GA-rich Low_complexity Low_complexity 2 41 0 300 91 0 0 chr11 116469288 116469332 -34314221 + (CA)n Simple_repeat Simple_repeat 2 45 0 33 0 0 0 chr11 116469586 116469619 -34313934 + AT_rich Low_complexity Low_complexity 1 33 0 227 0 0 83 chr11 116470429 116470465 -34313088 + (A)n Simple_repeat Simple_repeat 1 33 0 186 43 0 0 chr11 116470610 116470633 -34312920 + (TA)n Simple_repeat Simple_repeat 1 23 0 199 328 69 0 chr11 116470683 116470741 -34312812 - L2 LINE L2 -62 3210 3149 1494 190 34 101 chr11 116470771 116471265 -34312288 + Charlie4a DNA MER1_type 46 506 -2 1535 168 81 0 chr11 116472963 116473248 -34310305 + AluJb SINE Alu 1 308 -4 4239 287 144 38 chr11 116473976 116476313 -34307240 - L2 LINE L2 0 3313 737 321 292 71 18 chr11 116476338 116476451 -34307102 + MIR SINE MIR 67 185 -77 29 78 0 0 chr11 116476784 116476848 -34306705 + AT_rich Low_complexity Low_complexity 1 64 0 28 0 0 0 chr11 116477230 116477258 -34306295 + AT_rich Low_complexity Low_complexity 1 28 0 484 299 51 6 chr11 116477706 116477863 -34305690 + L3 LINE CR1 1311 1474 -103 22 56 0 0 chr11 116478879 116478915 -34304638 + AT_rich Low_complexity Low_complexity 1 36 0 231 321 88 22 chr11 116479215 116479352 -34304201 - MIR SINE MIR -23 239 94 342 0 0 0 chr11 116479856 116479894 -34303659 + (A)n Simple_repeat Simple_repeat 1 38 0 562 281 105 63 chr11 116480707 116481202 -34302351 + HAL1 LINE L1 54 569 -1938 259 283 0 0 chr11 116481202 116481262 -34302291 + HAL1 LINE L1 785 844 -1663 610 233 59 37 chr11 116481309 116481580 -34301973 + HAL1 LINE L1 985 1261 -1246 458 303 40 0 chr11 116481583 116481735 -34301818 + HAL1 LINE L1 1299 1456 -1051 545 245 37 79 chr11 116481871 116482112 -34301441 + HAL1 LINE L1 2246 2476 -31 942 141 28 0 chr11 116483528 116483705 -34299848 + L1MC3 LINE L1 7589 7770 -15 1986 154 3 23 chr11 116483751 116483974 -34299579 - L1MA4 LINE L1 0 6300 6087 1897 100 66 77 chr11 116483974 116484353 -34299200 + THE1C LTR MaLR 1 375 0 1986 154 3 23 chr11 116484353 116484519 -34299034 - L1MA4 LINE L1 -213 6087 5919 724 194 61 17 chr11 116486136 116486316 -34297237 - MER53 DNA DNA 0 189 2 302 342 55 30 chr11 116486934 116487133 -34296420 + MIR SINE MIR 6 209 -53 2375 69 23 7 chr11 116487351 116487655 -34295898 + AluY SINE Alu 1 309 -2 581 211 134 36 chr11 116487755 116487949 -34295604 - AluJo SINE Alu -87 225 13 534 283 104 73 chr11 116488158 116488645 -34294908 - L2 LINE L2 -121 3192 2666 364 289 145 6 chr11 116488863 116489022 -34294531 + MIR SINE MIR 82 262 0 517 292 32 19 chr11 116489249 116489607 -34293946 + MLT1K LTR MaLR 131 543 -45 317 231 181 71 chr11 116490420 116490602 -34292951 + MIR SINE MIR 2 203 -59 2549 139 46 2 chr11 116490608 116491018 -34292535 + MSTA LTR MaLR 1 428 0 1555 171 7 31 chr11 116491100 116491387 -34292166 + AluJo SINE Alu 3 282 -30 647 290 12 12 chr11 116491401 116491570 -34291983 + MIR SINE MIR 23 191 -71 21 36 0 0 chr11 116492870 116492898 -34290655 + AT_rich Low_complexity Low_complexity 1 28 0 620 309 99 0 chr11 116493598 116493799 -34289754 + MIR SINE MIR 32 252 -10 1952 220 22 20 chr11 116494122 116494582 -34288971 + MLT1C LTR MaLR 1 461 -6 273 188 234 0 chr11 116494585 116494649 -34288904 - MIR SINE MIR -112 150 72 197 304 25 25 chr11 116494696 116494775 -34288778 + L2 LINE L2 2835 2913 -359 2315 152 59 12 chr11 116495684 116496092 -34287461 - MSTA LTR MaLR -1 427 1 2030 135 23 55 chr11 116498138 116498537 -34285016 + MLT1B LTR MaLR 5 390 0 1208 227 91 46 chr11 116498541 116498972 -34284581 - HAL1 LINE L1 -25 2482 2033 554 87 0 0 chr11 116498987 116499056 -34284497 + U4 snRNA snRNA 1 69 -76 2042 265 4 26 chr11 116499175 116499711 -34283842 - HERVL40 LTR ERVL -1996 3534 3011 1434 241 76 16 chr11 116499744 116500126 -34283427 - HERVL40 LTR ERVL -2604 2926 2522 1203 258 62 56 chr11 116500125 116500628 -34282925 - HERVL40 LTR ERVL -3919 1611 1106 * 751 205 20 0 chr11 116500653 116500804 -34282749 - HERVL40 LTR ERVL -4780 750 597 1597 258 37 57 chr11 116500877 116501419 -34282134 - HERVL40 LTR ERVL -4960 570 40 387 133 0 0 chr11 116501452 116501512 -34282041 - LTR40b LTR ERVL 0 462 403 24 32 0 0 chr11 116502145 116502176 -34281377 + AT_rich Low_complexity Low_complexity 1 31 0 286 315 74 0 chr11 116503488 116503596 -34279957 - MIR SINE MIR -100 162 47 357 301 102 55 chr11 116504513 116504749 -34278804 - L2 LINE L2 -565 2749 2503 240 35 0 0 chr11 116505316 116505345 -34278208 + (CA)n Simple_repeat Simple_repeat 2 30 0 570 270 197 43 chr11 116505362 116505838 -34277715 - MLT1G1 LTR MaLR -28 527 16 353 260 87 10 chr11 116506125 116506229 -34277324 + MER91C DNA MER1_type 2 113 -27 206 355 99 13 chr11 116506298 116506450 -34277103 - L2 LINE L2 -925 2389 2225 335 214 245 29 chr11 116506837 116506996 -34276557 - MIR SINE MIR -62 146 7 186 405 0 0 chr11 116507512 116507586 -34275967 - L2 LINE L2 -2 3270 3197 236 209 0 0 chr11 116507593 116507636 -34275917 - HAL1b LINE L1 -91 1257 1215 1058 283 47 37 chr11 116507798 116508368 -34275185 - HAL1b LINE L1 -149 1199 624 37 62 0 0 chr11 116509486 116509551 -34274002 + AT_rich Low_complexity Low_complexity 1 65 0 561 264 108 18 chr11 116510976 116511143 -34272410 - MER5A DNA MER1_type -1 188 7 2221 112 27 24 chr11 116511281 116511655 -34271898 - THE1C LTR MaLR 0 375 1 254 230 7 126 chr11 116511876 116512011 -34271542 - L2 LINE L2 -1879 1435 1317 23 54 0 0 chr11 116512108 116512145 -34271408 + AT_rich Low_complexity Low_complexity 1 37 0 698 114 0 0 chr11 116513992 116514097 -34269456 + AluY SINE Alu 204 308 -3 24 53 0 0 chr11 116515594 116515632 -34267921 + AT_rich Low_complexity Low_complexity 1 38 0 256 235 0 0 chr11 116516280 116516331 -34267222 - L2 LINE L2 -1 3312 3262 21 0 0 0 chr11 116516348 116516369 -34267184 + AT_rich Low_complexity Low_complexity 1 21 0 1324 305 69 10 chr11 116516387 116516915 -34266638 - L2 LINE L2 -260 3053 2492 213 300 175 0 chr11 116517491 116517611 -34265942 + MIR3 SINE MIR 60 200 -8 450 226 16 57 chr11 116518382 116518506 -34265047 - MER94 DNA DNA -15 119 1 354 183 0 0 chr11 116519092 116519163 -34264390 + (CTA)n Simple_repeat Simple_repeat 1 71 0 589 257 112 46 chr11 116519265 116519355 -34264198 + MIR SINE MIR 2 85 -177 1283 261 114 28 chr11 116519355 116519900 -34263653 - MLT1G1 LTR MaLR 0 595 4 589 257 112 46 chr11 116519900 116519961 -34263592 + MIR SINE MIR 85 141 -121 2146 76 0 31 chr11 116519961 116520279 -34263274 + AluY SINE Alu 1 309 0 589 257 112 46 chr11 116520279 116520366 -34263187 + MIR SINE MIR 141 258 -4 783 114 121 8 chr11 116521326 116521458 -34262095 - MER1B DNA MER1_type 0 339 193 * 1934 147 51 3 chr11 116521452 116521766 -34261787 - MER1B DNA MER1_type -10 329 1 21 0 0 0 chr11 116522654 116522675 -34260878 + AT_rich Low_complexity Low_complexity 1 21 0 670 277 88 76 chr11 116522973 116523305 -34260248 - LTR33 LTR ERVL -3 518 176 1694 133 11 15 chr11 116523305 116523575 -34259978 + AluSx SINE Alu 37 305 -7 670 277 88 76 chr11 116523575 116523754 -34259799 - LTR33 LTR ERVL -345 176 1 364 230 35 0 chr11 116525345 116525432 -34258121 + MIR SINE MIR 63 152 -110 272 379 47 39 chr11 116525867 116526123 -34257430 - L2 LINE L2 -191 3081 2824 603 270 21 46 chr11 116526135 116526372 -34257181 + L2 LINE L2 3078 3308 -5 360 228 0 0 chr11 116527954 116528033 -34255520 + MER116 DNA Mariner 2 80 0 183 253 86 111 chr11 116528185 116528347 -34255206 + L2 LINE L2 2605 2762 -552 833 306 75 31 chr11 116528392 116528807 -34254746 - L2 LINE L2 0 3313 2881 681 290 82 11 chr11 116528824 116529103 -34254450 - L2 LINE L2 -560 2754 2456 371 305 75 32 chr11 116529176 116529363 -34254190 + MIR SINE MIR 14 208 -54 318 356 133 14 chr11 116530442 116530787 -34252766 + L2 LINE L2 2537 2922 -392 620 261 47 33 chr11 116530848 116531059 -34252494 - MLT1J LTR MaLR -297 214 1 376 291 48 62 chr11 116531958 116532185 -34251368 + L2 LINE L2 1795 2018 -1296 2824 117 11 13 chr11 116532716 116533170 -34250383 - L1MA3 LINE L1 0 6305 5853 1662 168 17 3 chr11 116535035 116535332 -34248221 + AluSg SINE Alu 1 301 -9 2385 72 3 0 chr11 116538943 116539236 -34244317 + AluSp SINE Alu 1 294 -19 199 299 26 26 chr11 116540540 116540617 -34242936 + MIR3 SINE MIR 127 203 -5 260 27 27 0 chr11 116540778 116540815 -34242738 + (TG)n Simple_repeat Simple_repeat 1 38 0 263 225 14 0 chr11 116540837 116540908 -34242645 + (TA)n Simple_repeat Simple_repeat 1 72 0 262 274 48 0 chr11 116540908 116540970 -34242583 - L2 LINE L2 -36 3236 3172 205 179 30 75 chr11 116542012 116542079 -34241474 + A-rich Low_complexity Low_complexity 2 65 0 221 333 71 109 chr11 116542251 116542702 -34240851 - L2 LINE L2 -14 3258 2825 48 85 0 0 chr11 116544508 116544626 -34238927 + AT_rich Low_complexity Low_complexity 1 118 0 214 240 0 0 chr11 116544723 116544773 -34238780 - L2 LINE L2 -2 3311 3262 332 197 248 36 chr11 116545359 116545496 -34238057 - L2 LINE L2 -15 3298 3133 43 0 0 0 chr11 116545808 116545851 -34237702 + AT_rich Low_complexity Low_complexity 1 43 0 407 240 67 0 chr11 116546399 116546503 -34237050 - MER103 DNA DNA -29 137 27 22 0 0 0 chr11 116547193 116547215 -34236338 + AT_rich Low_complexity Low_complexity 1 22 0 31966 109 12 52 chr11 116547259 116553673 -34229880 - L1PA7 LINE L1 -1 6153 12 243 384 20 14 chr11 116554720 116554866 -34228687 + MIR3 SINE MIR 3 149 -59 1102 293 60 46 chr11 116555284 116555766 -34227787 - LTR16C LTR ERVL 0 491 3 379 278 40 8 chr11 116555812 116555938 -34227615 - L3 LINE CR1 -56 1521 1392 255 175 0 0 chr11 116556025 116556082 -34227471 + (CA)n Simple_repeat Simple_repeat 2 58 0 198 0 0 0 chr11 116557403 116557425 -34226128 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 5331 44 5 1 chr11 116557607 116558266 -34225287 - L1PA5 LINE L1 0 6154 5494 1088 16 0 0 chr11 116558266 116558394 -34225159 + L1PA5 LINE L1 5364 5491 -663 21 0 0 0 chr11 116558591 116558612 -34224941 + AT_rich Low_complexity Low_complexity 1 21 0 368 244 173 8 chr11 116559707 116559834 -34223719 + L1MEd LINE L1 6 153 -5966 719 291 39 46 chr11 116559933 116560239 -34223314 + L1MEd LINE L1 326 629 -5490 344 303 0 21 chr11 116560234 116560431 -34223122 + L1MEd LINE L1 1167 1252 -4867 * 225 0 0 0 chr11 116560509 116560534 -34223019 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2362 65 9 15 chr11 116560535 116560873 -34222680 - L1MA1 LINE L1 -9 6293 5958 24 32 0 0 chr11 116561770 116561801 -34221752 + AT_rich Low_complexity Low_complexity 1 31 0 2787 10 0 10 chr11 116562602 116562916 -34220637 - AluYa5 SINE Alu 0 311 1 27 0 0 0 chr11 116563256 116563283 -34220270 + AT_rich Low_complexity Low_complexity 1 27 0 1064 213 138 6 chr11 116563913 116564246 -34219307 + L1M4 LINE L1 4015 4391 -1755 184 238 0 0 chr11 116566158 116566200 -34217353 + L2 LINE L2 3197 3238 -75 24 32 0 0 chr11 116566661 116566692 -34216861 + AT_rich Low_complexity Low_complexity 1 31 0 181 208 75 19 chr11 116568264 116568317 -34215236 + MIR3 SINE MIR 110 165 -43 221 204 0 0 chr11 116568329 116568373 -34215180 + L2 LINE L2 3270 3313 0 23 33 0 0 chr11 116568537 116568567 -34214986 + AT_rich Low_complexity Low_complexity 1 30 0 689 329 24 20 chr11 116568589 116568841 -34214712 + MIR SINE MIR 8 260 -2 210 304 0 0 chr11 116568968 116569014 -34214539 + polypurine Low_complexity Low_complexity 3 48 0 2813 7 0 0 chr11 116569121 116569429 -34214124 - AluYb8 SINE Alu -10 308 1 354 45 0 0 chr11 116569580 116569624 -34213929 + (TG)n Simple_repeat Simple_repeat 1 44 0 348 133 78 0 chr11 116569791 116569919 -34213634 + (TAGA)n Simple_repeat Simple_repeat 3 140 0 261 119 0 0 chr11 116569949 116569991 -34213562 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 7589 196 16 7 chr11 116570154 116572279 -34211274 - L1P4 LINE L1 -405 5761 3620 193 238 0 24 chr11 116573636 116573678 -34209875 - L2 LINE L2 -12 3260 3220 186 327 0 19 chr11 116573875 116573927 -34209626 + L2 LINE L2 3219 3269 -3 3217 219 9 1 chr11 116573932 116574579 -34208974 + MER82 DNA MER2_type 1 652 -1 183 314 149 11 chr11 116574726 116574901 -34208652 + L2 LINE L2 2848 3046 -226 1792 114 38 48 chr11 116574901 116575216 -34208337 - AluSx SINE Alu 0 312 1 499 146 0 0 chr11 116575217 116575299 -34208254 + L1MA3 LINE L1 6068 6149 -156 1963 150 0 13 chr11 116576659 116576973 -34206580 - AluJb SINE Alu -2 310 1 823 283 78 31 chr11 116578515 116578872 -34204681 - MLT1I LTR MaLR -6 403 30 451 301 136 6 chr11 116580463 116580639 -34202914 - MIR SINE MIR 0 262 64 462 331 46 5 chr11 116582042 116582245 -34201308 - MIR SINE MIR -12 250 41 22 56 0 0 chr11 116583334 116583370 -34200183 + AT_rich Low_complexity Low_complexity 1 36 0 543 263 88 56 chr11 116583767 116584018 -34199535 + MIR SINE MIR 4 262 0 30 59 0 0 chr11 116584143 116584194 -34199359 + AT_rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr11 116585276 116585311 -34198242 + AT_rich Low_complexity Low_complexity 1 35 0 324 0 0 0 chr11 116586113 116586149 -34197404 + (TA)n Simple_repeat Simple_repeat 2 37 0 294 50 0 0 chr11 116586860 116586900 -34196653 + (TA)n Simple_repeat Simple_repeat 1 40 0 554 217 86 26 chr11 116587445 116587597 -34195956 - L2 LINE L2 0 3313 3153 273 205 60 0 chr11 116588344 116588427 -34195126 + (TA)n Simple_repeat Simple_repeat 1 88 0 22 80 0 0 chr11 116588851 116588901 -34194652 + AT_rich Low_complexity Low_complexity 1 50 0 208 185 0 37 chr11 116589417 116589471 -34194082 + (CAAAG)n Simple_repeat Simple_repeat 2 53 0 209 171 0 0 chr11 116589927 116589962 -34193591 - L2 LINE L2 -18 3295 3261 2005 136 0 16 chr11 116590241 116590549 -34193004 + AluSx SINE Alu 1 303 -9 559 289 70 5 chr11 116590561 116590748 -34192805 + MIR SINE MIR 51 249 -13 340 327 45 9 chr11 116590836 116590946 -34192607 + L2 LINE L2 3153 3266 -6 396 0 0 0 chr11 116592155 116592199 -34191354 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr11 116592378 116592399 -34191154 + AT_rich Low_complexity Low_complexity 1 21 0 240 397 58 0 chr11 116592498 116592619 -34190934 - L2 LINE L2 0 3272 3145 378 0 0 0 chr11 116595650 116595692 -34187861 + (TG)n Simple_repeat Simple_repeat 2 43 0 185 302 0 19 chr11 116595705 116595758 -34187795 + MER5A DNA MER1_type 2 53 -136 322 268 54 68 chr11 116596235 116596515 -34187038 + L1ME4a LINE L1 5051 5326 -820 615 294 52 29 chr11 116596675 116597018 -34186535 + L1ME4a LINE L1 5533 5883 -238 21 0 0 0 chr11 116597167 116597188 -34186365 + AT_rich Low_complexity Low_complexity 1 21 0 294 270 211 49 chr11 116597716 116597901 -34185652 + MIR SINE MIR 46 260 -2 229 237 140 43 chr11 116597926 116598019 -34185534 - MIR SINE MIR -82 180 79 467 222 7 78 chr11 116600605 116600758 -34182795 - MER104 DNA Tc2 -5 175 34 378 0 0 0 chr11 116605608 116605650 -34177903 + (CA)n Simple_repeat Simple_repeat 2 43 0 2005 117 3 30 chr11 116605768 116606068 -34177485 + AluSx SINE Alu 1 292 -20 1874 141 3 61 chr11 116606477 116606804 -34176749 - AluSx SINE Alu -4 308 1 1720 156 22 44 chr11 116607303 116607618 -34175935 + AluJo SINE Alu 1 308 -4 21 0 0 0 chr11 116608040 116608061 -34175492 + AT_rich Low_complexity Low_complexity 1 21 0 1908 116 9 63 chr11 116614431 116614749 -34168804 + AluSq SINE Alu 3 303 -10 194 286 214 20 chr11 116616868 116616966 -34166587 - MIR SINE MIR -69 139 23 340 283 220 47 chr11 116617174 116617365 -34166188 + L3 LINE CR1 1351 1574 -3 208 301 48 48 chr11 116619061 116619144 -34164409 - MIR SINE MIR -172 90 8 1794 158 0 10 chr11 116620652 116620949 -34162604 + AluJb SINE Alu 6 299 -13 25 0 0 0 chr11 116620951 116620976 -34162577 + AT_rich Low_complexity Low_complexity 1 25 0 41 21 0 0 chr11 116622827 116622875 -34160678 + AT_rich Low_complexity Low_complexity 1 48 0 1906 104 46 39 chr11 116622928 116623235 -34160318 - AluSc SINE Alu 0 309 1 441 267 151 29 chr11 116624164 116624354 -34159199 + MIR SINE MIR 10 192 -58 236 305 156 42 chr11 116625270 116625437 -34158116 + MIR3 SINE MIR 17 202 -6 23 0 0 0 chr11 116625672 116625695 -34157858 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 116625988 116626009 -34157544 + AT_rich Low_complexity Low_complexity 1 21 0 1716 146 59 17 chr11 116626040 116626328 -34157225 + AluJb SINE Alu 5 304 -8 309 209 0 0 chr11 116627953 116628020 -34155533 + (CATA)n Simple_repeat Simple_repeat 1 67 0 320 263 120 57 chr11 116628731 116629047 -34154506 - L1ME4a LINE L1 -1 6120 5785 229 97 83 28 chr11 116629254 116629326 -34154227 + (TA)n Simple_repeat Simple_repeat 1 76 0 257 287 11 0 chr11 116629362 116629456 -34154097 - L1ME4a LINE L1 -459 5662 5568 6425 71 8 0 chr11 116629494 116630458 -34153095 - L1PA8A LINE L1 -12 6119 5157 * 14919 42 2 2 chr11 116630455 116633064 -34150489 - L1PA5 LINE L1 -4 6150 3542 7805 166 14 42 chr11 116633066 116635410 -34148143 - L1P3 LINE L1 -4113 2348 4 233 324 45 34 chr11 116635419 116635595 -34147958 - L1ME4a LINE L1 -2254 5554 5377 895 198 19 34 chr11 116635891 116636098 -34147455 - MER46A DNA MER2_type -28 208 5 2330 96 3 3 chr11 116639134 116639446 -34144107 - AluSq SINE Alu -1 312 1 530 263 258 0 chr11 116644749 116644943 -34138610 + MIR SINE MIR 18 261 -1 213 98 20 78 chr11 116645520 116645571 -34137982 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 22 0 0 0 chr11 116647081 116647103 -34136450 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr11 116647869 116647906 -34135647 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr11 116647945 116647986 -34135567 + AT_rich Low_complexity Low_complexity 1 41 0 249 306 14 0 chr11 116649201 116649273 -34134280 - U6 snRNA snRNA -34 73 1 21 0 0 0 chr11 116650101 116650122 -34133431 + AT_rich Low_complexity Low_complexity 1 21 0 314 149 45 15 chr11 116652374 116652441 -34131112 - L1ME1 LINE L1 -9 6157 6089 291 204 0 0 chr11 116652516 116652565 -34130988 - L2 LINE L2 0 3313 3265 396 0 0 0 chr11 116655895 116655939 -34127614 + (CA)n Simple_repeat Simple_repeat 1 44 0 370 319 8 102 chr11 116656078 116656313 -34127240 + L2 LINE L2 2929 3141 -131 246 219 42 118 chr11 116656322 116656441 -34127112 - LTR11 LTR ERV -234 450 341 269 197 167 15 chr11 116656530 116656596 -34126957 + Tigger5 DNA MER2_type 4 79 -2244 * 1280 176 43 0 chr11 116656589 116656822 -34126731 + Tigger5 DNA MER2_type 2081 2323 0 239 224 0 15 chr11 116657591 116657658 -34125895 + (TGAA)n Simple_repeat Simple_repeat 3 68 0 845 106 28 14 chr11 116658407 116658549 -34125004 + L1MA5A LINE L1 6149 6292 -5 291 369 84 11 chr11 116658586 116658849 -34124704 + L2 LINE L2 537 818 -2496 544 353 96 25 chr11 116659087 116659736 -34123817 + L2 LINE L2 2045 2739 -575 650 300 72 65 chr11 116659904 116660334 -34123219 - LTR67 LTR ERVL -4 553 121 320 314 178 5 chr11 116660664 116660849 -34122704 + MIR SINE MIR 34 250 -12 3437 264 71 35 chr11 116660891 116662146 -34121407 + L1MCc LINE L1 32 1342 -5081 2019 113 0 0 chr11 116662146 116662420 -34121133 + AluSg SINE Alu 35 308 -2 3437 264 71 35 chr11 116662420 116662522 -34121031 + L1MCc LINE L1 1342 1439 -4984 858 221 157 12 chr11 116662538 116662787 -34120766 + MLT1E1 LTR MaLR 10 294 -360 1228 207 75 43 chr11 116662848 116663312 -34120241 + L1MCc LINE L1 2623 3101 -4021 416 256 0 0 chr11 116663948 116664026 -34119527 + MER96B DNA MER1_type? 1 78 -339 238 364 62 8 chr11 116664040 116664169 -34119384 + L2 LINE L2 2924 3059 -213 2374 93 7 0 chr11 116664509 116664811 -34118742 - AluSc SINE Alu -5 304 1 234 133 17 67 chr11 116664811 116664866 -34118687 - MLT1K LTR MaLR -13 575 524 1650 266 33 33 chr11 116664887 116665245 -34118308 - MER74B LTR ERVL 0 622 262 6798 121 62 13 chr11 116665245 116666418 -34117135 - Tigger3b DNA MER2_type 0 1231 1 1650 266 33 33 chr11 116666418 116666609 -34116944 - MER74B LTR ERVL -359 263 73 6613 189 11 22 chr11 116666609 116668053 -34115500 - L1 LINE L1 -912 5234 3807 575 194 0 0 chr11 116668051 116668154 -34115399 + L1PA16 LINE L1 6044 6146 -20 * 370 157 34 34 chr11 116668162 116668251 -34115302 - MER74B LTR ERVL -533 89 1 372 299 87 81 chr11 116668265 116668749 -34114804 - MLT1K LTR MaLR -82 533 24 2748 120 61 17 chr11 116668988 116669563 -34113990 - MER4B LTR ERV1 0 766 1 303 152 0 0 chr11 116670418 116670464 -34113089 + tRNA-Ile-ATT tRNA tRNA 1 46 -31 1493 197 14 24 chr11 116671189 116671478 -34112075 + AluJo SINE Alu 4 289 -23 737 173 0 27 chr11 116671487 116671672 -34111881 + GA-rich Low_complexity Low_complexity 1 180 0 1267 309 22 40 chr11 116671904 116672479 -34111074 - L2 LINE L2 0 3313 2749 262 261 31 0 chr11 116672446 116672511 -34111042 + L2 LINE L2 2749 2815 -499 * 515 281 23 0 chr11 116672512 116672640 -34110913 - L2 LINE L2 -941 2373 2243 22 0 0 0 chr11 116672808 116672830 -34110723 + AT_rich Low_complexity Low_complexity 1 22 0 334 251 101 69 chr11 116672831 116673322 -34110231 + L1MC/D LINE L1 5353 5865 -470 402 341 24 0 chr11 116673322 116673445 -34110108 - MIR SINE MIR -117 145 20 298 338 0 0 chr11 116673541 116673612 -34109941 - L2 LINE L2 -38 3234 3164 308 171 122 24 chr11 116673870 116673952 -34109601 + MLT1J LTR MaLR 1 90 -421 1447 187 47 10 chr11 116673960 116674260 -34109293 + MLT1C LTR MaLR 149 459 -8 264 311 85 19 chr11 116674298 116674404 -34109149 + L2 LINE L2 1346 1458 -1856 377 360 24 0 chr11 116674461 116674586 -34108967 + MIR SINE MIR 6 133 -129 304 175 0 0 chr11 116674606 116674663 -34108890 - MLT2B1 LTR ERVL 0 520 464 309 333 0 0 chr11 116674666 116674756 -34108797 - L1MC4 LINE L1 -1339 6703 6614 * 340 273 23 0 chr11 116674680 116674768 -34108785 + L1MC4 LINE L1 6614 6703 -1339 554 188 21 0 chr11 116674786 116674882 -34108671 - MLT2C1 LTR ERVL -70 327 230 373 254 61 9 chr11 116675217 116675331 -34108222 - MLT1C LTR MaLR -340 127 8 923 133 54 12 chr11 116676444 116676610 -34106943 + FRAM SINE Alu 4 176 0 190 244 128 12 chr11 116676882 116676968 -34106585 - MIR SINE MIR -70 138 43 5635 145 24 44 chr11 116677039 116678132 -34105421 + MER11C LTR ERVK 1 1071 0 37 0 0 0 chr11 116679094 116679131 -34104422 + AT_rich Low_complexity Low_complexity 1 37 0 1460 241 69 43 chr11 116679659 116679714 -34103839 + MLT1H LTR MaLR 1 53 -496 2534 47 0 13 chr11 116679714 116680012 -34103541 - AluY SINE Alu -17 294 1 1460 241 69 43 chr11 116680012 116680491 -34103062 + MLT1H LTR MaLR 53 549 0 1744 143 3 66 chr11 116680726 116680863 -34102690 + AluSx SINE Alu 7 116 -196 2250 115 0 0 chr11 116680863 116681168 -34102385 + AluY SINE Alu 1 305 -6 1744 143 3 66 chr11 116681168 116681331 -34102222 + AluSx SINE Alu 116 288 -24 2147 132 39 39 chr11 116681703 116682067 -34101486 - THE1B LTR MaLR 0 364 1 273 125 25 0 chr11 116682502 116682542 -34101011 - MER5A DNA MER1_type 0 189 149 666 149 179 56 chr11 116683390 116683585 -34099968 - MER20 DNA MER1_type 0 219 1 228 395 26 0 chr11 116685508 116685622 -34097931 + L2 LINE L2 2524 2640 -674 710 312 58 80 chr11 116685638 116686103 -34097450 + L2 LINE L2 2817 3271 -1 216 294 0 0 chr11 116686450 116686542 -34097011 + A-rich Low_complexity Low_complexity 1 92 0 21 0 0 0 chr11 116686826 116686847 -34096706 + AT_rich Low_complexity Low_complexity 1 21 0 573 201 72 50 chr11 116686976 116687115 -34096438 + MER5A DNA MER1_type 46 187 -2 244 291 93 12 chr11 116687163 116687249 -34096304 - LTR67 LTR ERVL -362 195 103 215 257 81 27 chr11 116687595 116687669 -34095884 + MIR3 SINE MIR 125 202 -6 232 243 155 11 chr11 116687727 116687860 -34095693 - MIR SINE MIR -71 191 39 2054 135 0 3 chr11 116687923 116688226 -34095327 + AluSx SINE Alu 3 304 -8 979 228 43 36 chr11 116688497 116688778 -34094775 + MER93a LTR ERV1 120 402 0 891 222 107 0 chr11 116689532 116689748 -34093805 + MIR SINE MIR 3 241 -21 542 274 65 7 chr11 116689908 116690061 -34093492 - MER63A DNA MER1_type -5 205 44 1589 199 21 0 chr11 116690209 116690495 -34093058 - AluJo SINE Alu -14 298 7 182 289 0 0 chr11 116690841 116690879 -34092674 + L2 LINE L2 3204 3241 -31 249 217 48 0 chr11 116691398 116691481 -34092072 + L1MC/D LINE L1 5720 5806 -2002 386 241 241 0 chr11 116692241 116692349 -34091204 - MER5A DNA MER1_type -2 187 54 962 223 46 32 chr11 116692396 116692726 -34090827 - MER33 DNA MER1_type -2 322 1 208 333 49 49 chr11 116692726 116692888 -34090665 - MER5A DNA MER1_type -27 162 1 607 224 42 7 chr11 116692727 116692870 -34090683 + MER5B DNA MER1_type 29 176 -2 844 98 121 6 chr11 116693600 116693774 -34089779 - Charlie5 DNA MER1_type 0 2624 2431 259 282 48 40 chr11 116693895 116694019 -34089534 + L2 LINE L2 2973 3097 -175 630 256 87 14 chr11 116694179 116694386 -34089167 + MIR SINE MIR 40 261 -1 229 182 0 143 chr11 116695187 116695264 -34088289 + HsTC2 DNA Tc2 1221 1286 -612 362 239 0 0 chr11 116695414 116695485 -34088068 - L2 LINE L2 -4 3309 3239 362 271 0 41 chr11 116697060 116697182 -34086371 + L2 LINE L2 1856 1972 -1342 315 0 0 0 chr11 116697183 116697218 -34086335 + (T)n Simple_repeat Simple_repeat 1 35 0 210 312 192 40 chr11 116697340 116697689 -34085864 + L2 LINE L2 2561 2962 -352 460 124 90 0 chr11 116697798 116697887 -34085666 - MER53 DNA DNA 0 189 93 25 0 0 0 chr11 116697906 116697931 -34085622 + AT_rich Low_complexity Low_complexity 1 25 0 212 273 216 0 chr11 116698004 116698092 -34085461 + L2 LINE L2 3204 3310 -3 406 173 164 9 chr11 116698777 116698887 -34084666 + Charlie5 DNA MER1_type 1 127 -2485 * 1316 139 65 7 chr11 116698884 116699178 -34084375 + Charlie5 DNA MER1_type 2234 2544 -68 5155 153 60 37 chr11 116699184 116699514 -34084039 - L1MA9 LINE L1 -2 6310 5989 1243 208 74 21 chr11 116699514 116699798 -34083755 - AluJo SINE Alu 0 302 4 5155 153 60 37 chr11 116699798 116699947 -34083606 - L1MA9 LINE L1 -323 5989 5845 270 81 0 0 chr11 116699947 116699984 -34083569 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 5155 153 60 37 chr11 116699984 116701115 -34082438 - L1MA9 LINE L1 -467 5845 4661 1003 133 0 0 chr11 116701155 116701298 -34082255 + THE1B LTR MaLR 1 143 -221 1351 138 46 32 chr11 116701514 116701731 -34081822 + THE1B LTR MaLR 145 364 0 207 257 48 57 chr11 116701984 116702089 -34081464 + L2 LINE L2 2918 3021 -251 2102 140 0 0 chr11 116702189 116702474 -34081079 - AluSg SINE Alu -23 287 3 273 236 34 45 chr11 116702474 116702559 -34080994 + L2 LINE L2 3189 3272 0 850 249 19 10 chr11 116703395 116703600 -34079953 - MIR SINE MIR -16 246 40 219 291 70 12 chr11 116703750 116703836 -34079717 + L2 LINE L2 3190 3280 -33 1493 179 0 43 chr11 116704318 116704597 -34078956 + AluJo SINE Alu 27 293 -19 380 314 51 0 chr11 116705800 116705918 -34077635 + L2 LINE L2 3148 3271 -1 1078 215 36 16 chr11 116706381 116706828 -34076725 + MLT1D LTR MaLR 1 505 0 253 197 15 15 chr11 116706990 116707056 -34076497 + A-rich Low_complexity Low_complexity 2 67 0 225 161 210 37 chr11 116707647 116707728 -34075825 - L1MC5 LINE L1 -214 7747 7653 413 354 69 37 chr11 116707948 116708194 -34075359 - L3 LINE CR1 -357 1220 967 244 146 0 0 chr11 116708216 116708257 -34075296 - L2 LINE L2 0 3313 3273 261 0 0 0 chr11 116709666 116709695 -34073858 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 508 250 112 96 chr11 116710087 116710682 -34072871 + MLT1G1 LTR MaLR 2 555 0 22 0 0 0 chr11 116711013 116711035 -34072518 + AT_rich Low_complexity Low_complexity 1 22 0 451 242 75 56 chr11 116711635 116711823 -34071730 + MIR SINE MIR 19 213 -36 2159 178 29 17 chr11 116712193 116712614 -34070939 + MSTB LTR MaLR 1 426 0 402 325 32 7 chr11 116713705 116713859 -34069694 - MIR SINE MIR -6 256 99 433 162 15 0 chr11 116714160 116714228 -34069325 + AluSc SINE Alu 134 202 -107 1214 209 75 43 chr11 116714964 116715428 -34068125 - L1MEc LINE L1 -4021 3101 2623 858 221 157 12 chr11 116715489 116715738 -34067815 - MLT1E1 LTR MaLR -360 294 10 353 228 30 10 chr11 116715754 116715855 -34067698 - L1MEc LINE L1 -4984 1439 1337 1041 121 0 0 chr11 116715856 116716005 -34067548 - AluSg/x SINE Alu -2 310 162 236 299 58 11 chr11 116716486 116716573 -34066980 - L2 LINE L2 -33 3280 3190 850 249 19 10 chr11 116716723 116716928 -34066625 + MIR SINE MIR 40 246 -16 273 236 34 45 chr11 116717766 116717851 -34065702 - L2 LINE L2 0 3272 3188 2102 140 0 0 chr11 116717851 116718136 -34065417 + AluSg SINE Alu 3 287 -23 207 257 48 57 chr11 116718236 116718341 -34065212 - L2 LINE L2 -251 3021 2918 2606 222 26 87 chr11 116718713 116719788 -34063765 - L1MDa LINE L1 -1590 4950 3942 1150 192 57 10 chr11 116719851 116720762 -34062791 - L1MDa LINE L1 -3118 3422 2364 2036 93 10 33 chr11 116720765 116721067 -34062486 - AluSq SINE Alu -18 295 1 1469 255 48 19 chr11 116721087 116721499 -34062054 - L1MDa LINE L1 -6020 520 97 23 33 0 0 chr11 116721501 116721531 -34062022 + AT_rich Low_complexity Low_complexity 1 30 0 337 158 118 0 chr11 116721570 116721646 -34061907 - L1MDa LINE L1 -6453 87 3 327 278 61 0 chr11 116721928 116722043 -34061510 + MIR SINE MIR 75 196 -66 189 0 0 0 chr11 116722408 116722429 -34061124 + (T)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr11 116723016 116723039 -34060514 + AT_rich Low_complexity Low_complexity 1 23 0 282 189 0 0 chr11 116723057 116723110 -34060443 + L1MC5 LINE L1 7814 7866 -95 227 221 44 15 chr11 116723148 116723216 -34060337 + L1MC/D LINE L1 5691 5760 -2048 816 163 78 152 chr11 116724273 116724530 -34059023 - MER8 DNA MER2_type 0 239 2 370 267 0 17 chr11 116724745 116724861 -34058692 - MIR SINE MIR -1 261 148 260 281 118 78 chr11 116725838 116725991 -34057562 + L2 LINE L2 3155 3313 0 1979 38 4 0 chr11 116726627 116726863 -34056690 + L1PA3 LINE L1 5914 6150 -5 262 303 213 13 chr11 116728060 116728215 -34055338 - MIR SINE MIR -5 257 72 226 200 73 0 chr11 116728524 116728579 -34054974 + L1P LINE L1 4882 4940 -1206 24 32 0 0 chr11 116728619 116728650 -34054903 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr11 116728745 116728771 -34054782 + AT_rich Low_complexity Low_complexity 1 26 0 339 323 152 0 chr11 116728944 116729161 -34054392 + L1MC/D LINE L1 5402 5651 -470 246 264 72 16 chr11 116729184 116729309 -34054244 + L1MC/D LINE L1 5736 5867 -1941 739 113 8 57 chr11 116729327 116729451 -34054102 - AluJb SINE Alu -194 118 1 1866 109 69 0 chr11 116729487 116729762 -34053791 - AluSx SINE Alu -18 294 1 2370 74 7 0 chr11 116729953 116730249 -34053304 - AluY SINE Alu -13 298 1 246 222 342 0 chr11 116730566 116730683 -34052870 - MIR SINE MIR -6 256 100 663 221 57 0 chr11 116730697 116730837 -34052716 - MER46A DNA MER2_type -87 149 2 1509 201 118 24 chr11 116730953 116731375 -34052178 - MLT1C LTR MaLR 0 467 6 1637 167 61 87 chr11 116731380 116731805 -34051748 - MLT1C-int LTR MaLR 0 1371 958 252 343 0 29 chr11 116733890 116733960 -34049593 + L2 LINE L2 3154 3221 -51 226 313 70 20 chr11 116735072 116735273 -34048280 - L1M4 LINE L1 -2204 3942 3732 509 282 44 33 chr11 116735826 116736007 -34047546 - MIR SINE MIR -4 258 76 278 264 123 144 chr11 116737234 116737501 -34046052 - L2 LINE L2 -967 2347 2089 1917 161 28 8 chr11 116737501 116737856 -34045697 + MER47A DNA MER2_type 4 365 -1 278 264 123 144 chr11 116737856 116737985 -34045568 - L2 LINE L2 -1225 2089 1959 296 245 0 0 chr11 116737986 116738039 -34045514 + AluJ/monomer SINE Alu 1 53 -249 21 36 0 0 chr11 116738223 116738251 -34045302 + AT_rich Low_complexity Low_complexity 1 28 0 868 234 148 66 chr11 116738805 116739305 -34044248 + L1MC4 LINE L1 7377 7917 -125 2254 82 10 3 chr11 116739691 116739984 -34043569 + AluSp SINE Alu 1 295 -18 316 224 72 125 chr11 116740792 116740944 -34042609 + MIR3 SINE MIR 3 146 -62 21 36 0 0 chr11 116741117 116741145 -34042408 + AT_rich Low_complexity Low_complexity 1 28 0 254 353 33 33 chr11 116741242 116741392 -34042161 + MER5A DNA MER1_type 37 186 -3 310 223 152 36 chr11 116741988 116742100 -34041453 - L1ME4a LINE L1 -17 6104 5980 225 277 75 11 chr11 116742269 116742363 -34041190 - MLT1L LTR MaLR -6 609 510 257 284 98 41 chr11 116742393 116742587 -34040966 - MLT1L LTR MaLR -189 426 222 301 274 160 52 chr11 116742723 116743142 -34040411 - L1ME4a LINE L1 -2027 5781 5318 23 54 0 0 chr11 116743354 116743391 -34040162 + AT_rich Low_complexity Low_complexity 1 37 0 1285 249 157 42 chr11 116743596 116744363 -34039190 - HAL1 LINE L1 -2 2505 1651 208 333 151 43 chr11 116745114 116745300 -34038253 - MIR SINE MIR -49 213 8 308 186 23 47 chr11 116745301 116745387 -34038166 + MER63 DNA MER1_type 2 711 -125 517 294 178 15 chr11 116746413 116746756 -34036797 + LTR33 LTR ERVL 123 521 0 2224 143 44 5 chr11 116747415 116747799 -34035754 + MSTA LTR MaLR 29 427 -1 257 302 122 39 chr11 116748230 116748485 -34035068 + ERVL LTR ERVL 1265 1540 -4224 742 298 68 38 chr11 116748523 116748997 -34034556 + ERVL LTR ERVL 1588 2075 -3579 823 161 37 0 chr11 116749039 116749200 -34034353 + MER2 DNA MER2_type 1 167 -178 256 262 0 0 chr11 116749262 116749323 -34034230 + MER2 DNA MER2_type 285 345 0 720 215 45 50 chr11 116749323 116749523 -34034030 + ERVL LTR ERVL 2185 2383 -3381 326 306 172 21 chr11 116749523 116749709 -34033844 + L2 LINE L2 409 622 -2692 315 333 29 11 chr11 116750105 116750279 -34033274 + ERVL LTR ERVL 2896 3072 -2582 1570 248 60 94 chr11 116750335 116751165 -34032388 + L2 LINE L2 2049 2817 -496 8512 100 48 1 chr11 116751165 116752390 -34031163 - HSMAR1 DNA Mariner 0 1287 5 1570 248 60 94 chr11 116752390 116752871 -34030682 + L2 LINE L2 2817 3313 0 2146 145 31 23 chr11 116752881 116753268 -34030285 - MLT1B LTR MaLR 0 390 1 6628 141 39 27 chr11 116753392 116753879 -34029674 - Tigger3b DNA MER2_type -1797 1231 751 2572 17 3 7 chr11 116753879 116754180 -34029373 + AluYa5 SINE Alu 1 300 -11 6628 141 39 27 chr11 116754180 116754909 -34028644 - Tigger3b DNA MER2_type -2277 751 1 312 364 48 31 chr11 116754967 116755195 -34028358 - MIR SINE MIR -30 232 1 248 53 26 0 chr11 116755531 116755569 -34027984 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 23 54 0 0 chr11 116755708 116755745 -34027808 + AT_rich Low_complexity Low_complexity 1 37 0 716 184 16 0 chr11 116756475 116756600 -34026953 + FLAM_A SINE Alu 1 127 -6 3467 229 76 133 chr11 116757936 116759621 -34023932 + L2 LINE L2 1196 2783 -531 19345 82 7 9 chr11 116759678 116762375 -34021178 + HERVL-A2 LTR ERVL 2965 5654 0 1752 166 61 36 chr11 116762375 116762912 -34020641 + MLT2A2 LTR ERVL 1 554 0 1171 295 75 29 chr11 116762919 116763397 -34020156 + L2 LINE L2 2805 3304 -9 1992 113 46 0 chr11 116763464 116763747 -34019806 - AluSx SINE Alu -12 300 5 687 250 136 30 chr11 116763849 116764085 -34019468 - MIR SINE MIR 0 262 2 375 250 76 45 chr11 116765376 116765508 -34018045 + L2 LINE L2 3137 3272 0 1802 189 0 0 chr11 116765659 116765955 -34017598 - AluJo SINE Alu -12 300 5 606 164 10 0 chr11 116765988 116766092 -34017461 - AluJb SINE Alu -187 125 21 1104 235 91 17 chr11 116766239 116766781 -34016772 - LTR36 LTR ERV1 0 611 2 3805 27 4 0 chr11 116767122 116767599 -34015954 - L1PA4 LINE L1 -2143 4003 3525 11759 21 1 0 chr11 116767599 116769733 -34013820 + L1PA4 LINE L1 4019 6154 -1 25 31 0 0 chr11 116770053 116770085 -34013468 + AT_rich Low_complexity Low_complexity 1 32 0 347 279 70 39 chr11 116770474 116770603 -34012950 - MER5B DNA MER1_type -1 177 45 333 312 80 94 chr11 116770949 116771311 -34012242 - L2 LINE L2 -1 3271 2915 776 241 30 35 chr11 116773192 116773395 -34010158 + MIR SINE MIR 20 221 -41 367 244 38 32 chr11 116773399 116773533 -34010020 - MIR SINE MIR -63 145 63 262 317 44 83 chr11 116773953 116774316 -34009237 - L2 LINE L2 -910 2404 2056 2159 123 0 7 chr11 116775151 116775453 -34008100 - AluSx SINE Alu -12 300 1 876 273 52 43 chr11 116776824 116777303 -34006250 - MER115 DNA AcHobo -29 664 118 240 35 0 0 chr11 116778052 116778081 -34005472 + (ATG)n Simple_repeat Simple_repeat 2 30 0 780 265 90 0 chr11 116778086 116778309 -34005244 - MIR SINE MIR -11 251 9 202 346 65 65 chr11 116779052 116779237 -34004316 + L2 LINE L2 2916 3100 -172 620 311 77 37 chr11 116779607 116779906 -34003647 + LTR16A LTR ERVL 133 443 -7 181 298 18 0 chr11 116779976 116780033 -34003520 + MIR SINE MIR 49 106 -156 570 264 100 14 chr11 116780182 116780402 -34003151 - MLT1J LTR MaLR -173 338 100 261 278 100 22 chr11 116781879 116781969 -34001584 + MIR SINE MIR 165 261 -1 21 0 0 0 chr11 116782017 116782038 -34001515 + AT_rich Low_complexity Low_complexity 1 21 0 452 331 37 25 chr11 116782090 116782335 -34001218 - L1M4 LINE L1 -2265 3881 3634 5786 108 25 5 chr11 116782344 116783671 -33999882 + L1PA13 LINE L1 4814 6163 0 458 333 50 17 chr11 116783674 116783854 -33999699 + MIR SINE MIR 4 189 -73 520 81 81 0 chr11 116783855 116783929 -33999624 + MADE1 DNA Mariner 1 80 0 229 305 73 34 chr11 116783960 116784317 -33999236 - L1M4 LINE L1 -2576 3570 3200 290 313 31 8 chr11 116784443 116784571 -33998982 - L1MC5 LINE L1 -48 7913 7783 383 189 119 0 chr11 116784728 116784871 -33998682 - L1MC5 LINE L1 -370 7591 7432 28 48 0 0 chr11 116784916 116784958 -33998595 + AT_rich Low_complexity Low_complexity 1 42 0 440 172 11 0 chr11 116785121 116785208 -33998345 - L1MC5 LINE L1 -542 7419 7332 397 191 15 0 chr11 116785210 116785278 -33998275 + MER106A DNA MER1_type 1 69 -167 672 312 78 68 chr11 116785288 116785470 -33998083 - L1M4 LINE L1 -3161 2985 2806 1875 145 0 30 chr11 116785470 116785774 -33997779 - AluSx SINE Alu -16 296 2 672 312 78 68 chr11 116785774 116785942 -33997611 - L1M4 LINE L1 -3340 2806 2641 243 0 0 0 chr11 116785942 116785969 -33997584 + (TG)n Simple_repeat Simple_repeat 2 28 0 672 312 78 68 chr11 116785969 116786262 -33997291 - L1M4 LINE L1 -3505 2641 2335 652 332 115 16 chr11 116786281 116786603 -33996950 + L2 LINE L2 2811 3164 -149 2615 119 3 3 chr11 116786613 116786991 -33996562 + MER83B LTR ERV1 1 378 0 8845 151 24 30 chr11 116786992 116787366 -33996187 + MER83B-int LTR ERV1 13 388 -4492 2972 162 32 57 chr11 116787366 116787994 -33995559 - LTR9 LTR ERV1 0 612 1 8845 151 24 30 chr11 116787994 116788380 -33995173 + MER83B-int LTR ERV1 388 775 -4105 2285 105 3 0 chr11 116788380 116788675 -33994878 + AluSc SINE Alu 1 296 -13 8845 151 24 30 chr11 116788675 116790106 -33993447 + MER83B-int LTR ERV1 775 2213 -2667 2177 119 3 0 chr11 116790106 116790400 -33993153 + AluSp SINE Alu 1 295 -18 8845 151 24 30 chr11 116790400 116791448 -33992105 + MER83B-int LTR ERV1 2213 4865 -15 2390 143 0 21 chr11 116791453 116791839 -33991714 + MER83B LTR ERV1 1 378 0 378 280 72 16 chr11 116791839 116791964 -33991589 + L2 LINE L2 3182 3313 0 1434 224 36 58 chr11 116792424 116792817 -33990736 + MLT2B1 LTR ERVL 1 384 -136 314 286 99 50 chr11 116793054 116793236 -33990317 + MIR SINE MIR 45 235 -27 505 228 68 62 chr11 116793305 116793467 -33990086 - MIR SINE MIR -94 168 6 194 310 53 88 chr11 116793540 116793653 -33989900 + L2 LINE L2 3144 3252 -20 232 307 55 39 chr11 116795244 116795371 -33988182 + MIR SINE MIR 1 129 -133 25 95 0 0 chr11 116796360 116796434 -33987119 + AT_rich Low_complexity Low_complexity 1 74 0 245 146 41 49 chr11 116796541 116796664 -33986889 + (TA)n Simple_repeat Simple_repeat 2 123 0 338 197 0 0 chr11 116797011 116797082 -33986471 + LTR28 LTR ERV1 1 55 -379 2314 164 27 0 chr11 116797096 116797468 -33986085 + MER61D LTR ERV1 120 501 0 450 189 45 45 chr11 116797548 116797680 -33985873 + L1MC4 LINE L1 7484 7615 -427 * 917 344 38 11 chr11 116797675 116798123 -33985430 + L1MEc LINE L1 20 479 -5917 249 228 11 141 chr11 116798215 116798276 -33985277 + MIR SINE MIR 173 220 -42 484 198 36 52 chr11 116798276 116798468 -33985085 + MER53 DNA DNA 1 189 0 249 228 11 141 chr11 116798468 116798498 -33985055 + MIR SINE MIR 220 252 -10 303 336 61 68 chr11 116798617 116799061 -33984492 + L2 LINE L2 1951 2391 -923 22 0 0 0 chr11 116801771 116801793 -33981760 + AT_rich Low_complexity Low_complexity 1 22 0 297 268 21 70 chr11 116801889 116802031 -33981522 + MIR3 SINE MIR 36 170 -38 510 308 91 16 chr11 116802084 116802337 -33981216 + L2 LINE L2 2367 2638 -676 1015 275 83 23 chr11 116802449 116802892 -33980661 - L2 LINE L2 -1235 2079 1610 415 232 24 72 chr11 116802924 116803049 -33980504 + L2 LINE L2 3195 3313 0 * 615 312 79 17 chr11 116803048 116803374 -33980179 + L2 LINE L2 2629 2977 -295 702 266 48 52 chr11 116803417 116803621 -33979932 + MIR SINE MIR 6 210 -52 1625 176 0 33 chr11 116803621 116803928 -33979625 + AluJb SINE Alu 3 299 -13 702 266 48 52 chr11 116803928 116803971 -33979582 + MIR SINE MIR 210 252 -10 433 236 77 73 chr11 116804008 116804228 -33979325 + L2 LINE L2 3084 3304 -9 1231 208 131 13 chr11 116804518 116804907 -33978646 - HsTC2 DNA Tc2 0 1898 1288 377 204 222 0 chr11 116804913 116805021 -33978532 - HsTC2 DNA Tc2 -1763 135 4 294 283 91 10 chr11 116805158 116805257 -33978296 - MIR SINE MIR -55 207 101 472 191 125 15 chr11 116805924 116806060 -33977493 - L1MD2 LINE L1 -15 6344 6194 5062 218 46 49 chr11 116806117 116808422 -33975131 - L1MD1 LINE L1 -400 6236 3942 1150 192 57 10 chr11 116808485 116809396 -33974157 - L1MD1 LINE L1 -3118 3422 2364 2051 113 7 3 chr11 116809399 116809692 -33973861 - AluSq SINE Alu -19 294 1 208 348 78 9 chr11 116809735 116809850 -33973703 + L2 LINE L2 3184 3306 -7 3095 178 36 21 chr11 116810155 116810768 -33972785 + LTR26E LTR ERV1 1 622 0 4127 87 4 0 chr11 116810877 116811429 -33972124 + MER41A LTR ERV1 1 554 0 246 77 26 0 chr11 116811858 116811897 -33971656 - LTR54 LTR ERV1 -1 509 470 2090 170 45 21 chr11 116811897 116812414 -33971139 + MLT2A2 LTR ERVL 1 552 -2 258 167 28 42 chr11 116812416 116812488 -33971065 - LTR54 LTR ERV1 -36 474 404 * 1050 200 135 56 chr11 116812470 116812900 -33970653 + LTR56 LTR ERV1 7 437 0 1470 202 73 61 chr11 116812900 116813326 -33970227 - LTR54 LTR ERV1 -78 432 2 478 144 89 0 chr11 116813522 116813612 -33969941 + MER4A LTR ERV1 1 98 -566 1544 149 182 72 chr11 116813612 116813974 -33969579 + MER4A LTR ERV1 261 662 -2 4932 44 0 0 chr11 116814034 116814625 -33968928 - LTR10C LTR ERV1 0 591 1 297 293 0 0 chr11 116814946 116815021 -33968532 - MIR SINE MIR -28 234 160 1530 164 4 0 chr11 116815021 116815265 -33968288 - Tigger3(Golem) DNA MER2_type -1 3028 2784 2381 104 62 6 chr11 116815265 116815622 -33967931 + MER51B LTR ERV1 1 377 0 8298 150 36 12 chr11 116815622 116817050 -33966503 + MER51B-int LTR ERV1 1 1462 -6354 3442 140 108 32 chr11 116817096 116817721 -33965832 + LTR1 LTR ERV1 1 690 -95 189 0 0 0 chr11 116817721 116817742 -33965811 + (AGGGGG)n Simple_repeat Simple_repeat 5 25 0 3442 140 108 32 chr11 116817742 116817838 -33965715 + LTR1 LTR ERV1 690 777 -8 679 156 50 68 chr11 116817947 116818146 -33965407 + MER4A LTR ERV1 281 534 -130 3729 102 58 0 chr11 116818153 116818813 -33964740 + MER51B-int LTR ERV1 1815 2512 -5304 2316 97 7 0 chr11 116818916 116819216 -33964337 - AluSx SINE Alu -10 302 1 196 261 136 0 chr11 116819343 116819431 -33964122 + L2 LINE L2 1970 2069 -1245 1174 45 0 0 chr11 116819589 116819723 -33963830 + AluSc SINE Alu 1 134 -175 1988 133 7 0 chr11 116820336 116820630 -33962923 - AluSx SINE Alu -14 298 3 2162 107 0 3 chr11 116820957 116821246 -33962307 - AluSc SINE Alu -21 288 1 281 277 110 39 chr11 116821263 116821418 -33962135 - MIR SINE MIR -77 185 20 1010 260 46 48 chr11 116821433 116821825 -33961728 - MER93a LTR ERV1 0 402 12 1676 245 41 47 chr11 116822100 116822566 -33960987 + MLT2B1 LTR ERVL 1 463 -57 230 236 0 0 chr11 116822817 116822872 -33960681 + (CA)n Simple_repeat Simple_repeat 1 55 0 421 215 0 0 chr11 116822894 116822970 -33960583 + MER3 DNA MER1_type 5 80 -129 233 204 0 0 chr11 116822970 116823019 -33960534 - MLT2B1 LTR ERVL 0 520 472 229 157 0 29 chr11 116823031 116823101 -33960452 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 999 229 24 30 chr11 116823105 116823466 -33960087 - MLT2B1 LTR ERVL -40 480 19 520 187 89 8 chr11 116823474 116823597 -33959956 + MER3 DNA MER1_type 76 208 -1 461 221 10 25 chr11 116823673 116823791 -33959762 + MLT1H1 LTR MaLR 171 265 -290 3867 89 0 31 chr11 116823824 116824411 -33959142 - L1P LINE L1 -743 5403 4835 837 110 14 28 chr11 116824429 116824574 -33958979 + Charlie1 DNA MER1_type 2413 2555 -206 294 227 18 27 chr11 116824576 116824686 -33958867 + (TA)n Simple_repeat Simple_repeat 1 109 0 446 234 166 7 chr11 116824832 116824977 -33958576 + MLT1H1 LTR MaLR 371 538 -29 2182 110 3 0 chr11 116826174 116826475 -33957078 + AluSx SINE Alu 1 302 -10 2394 55 10 0 chr11 116826504 116826795 -33956758 - AluY SINE Alu -17 294 1 212 197 16 66 chr11 116827712 116827773 -33955780 - L2 LINE L2 -5 3267 3210 721 295 51 35 chr11 116828077 116828331 -33955222 + MIR SINE MIR 4 261 -1 626 275 55 5 chr11 116829093 116829293 -33954260 - MIR SINE MIR -48 214 5 25 0 0 0 chr11 116830275 116830300 -33953253 + AT_rich Low_complexity Low_complexity 1 25 0 248 311 33 0 chr11 116835337 116835427 -33948126 + L3 LINE CR1 1302 1394 -183 404 279 205 61 chr11 116836052 116836349 -33947204 - L3 LINE CR1 -5 1572 1233 323 380 63 14 chr11 116837113 116837255 -33946298 + L2 LINE L2 3104 3252 -20 25 0 0 0 chr11 116837996 116838021 -33945532 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr11 116839685 116839708 -33943845 + AT_rich Low_complexity Low_complexity 1 23 0 1712 164 0 31 chr11 116840474 116840766 -33942787 + AluJo SINE Alu 4 286 -26 833 125 0 31 chr11 116840782 116840910 -33942643 + FLAM_C SINE Alu 1 124 -19 186 43 0 0 chr11 116840917 116840940 -33942613 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 337 313 14 56 chr11 116840945 116841089 -33942464 - MER5A DNA MER1_type -38 151 14 642 262 113 23 chr11 116841093 116841314 -33942239 + MIR SINE MIR 12 252 -10 277 306 35 0 chr11 116841556 116841641 -33941912 - L2 LINE L2 0 3272 3185 22 35 0 0 chr11 116841995 116842024 -33941529 + AT_rich Low_complexity Low_complexity 1 29 0 526 259 163 66 chr11 116843061 116843321 -33940232 - MLT1G1 LTR MaLR 0 590 357 800 212 54 30 chr11 116843321 116843524 -33940029 - MER3 DNA MER1_type -1 208 1 526 259 163 66 chr11 116843524 116843736 -33939817 - MLT1G1 LTR MaLR -233 357 57 6353 89 49 0 chr11 116843861 116844923 -33938630 - L1PA12 LINE L1 0 6168 5083 935 159 25 6 chr11 116844923 116845080 -33938473 - AluSc SINE Alu -16 293 134 274 314 12 0 chr11 116845380 116845466 -33938087 + MIR SINE MIR 99 185 -77 2282 99 3 0 chr11 116845571 116845874 -33937679 - AluY SINE Alu -7 304 1 2246 120 0 0 chr11 116846099 116846398 -33937155 - AluSx SINE Alu -13 299 1 668 223 64 6 chr11 116846836 116846993 -33936560 - MIR SINE MIR -77 185 20 195 42 0 0 chr11 116847459 116847483 -33936070 + (CAG)n Simple_repeat Simple_repeat 1 24 0 235 164 41 27 chr11 116847984 116848057 -33935496 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 1684 213 80 103 chr11 116849348 116849559 -33933994 + MLT1E LTR MaLR 1 215 -378 1990 107 3 62 chr11 116849559 116849684 -33933869 + AluSx SINE Alu 11 142 -170 2133 95 0 3 chr11 116849684 116849988 -33933565 + AluY SINE Alu 1 303 0 1990 107 3 62 chr11 116849988 116850169 -33933384 + AluSx SINE Alu 142 300 -12 1684 213 80 103 chr11 116850169 116850558 -33932995 + MLT1E LTR MaLR 215 587 -6 3222 141 42 11 chr11 116851330 116851897 -33931656 + MER4D LTR ERV1 1 585 -318 640 162 17 8 chr11 116851901 116852018 -33931535 + MER4D LTR ERV1 786 903 0 1790 183 35 182 chr11 116852091 116852895 -33930658 - LTR8A LTR ERV1 -1 726 41 251 263 157 14 chr11 116852953 116853139 -33930414 - L1M4 LINE L1 -4780 1864 1590 3614 138 56 33 chr11 116853619 116854257 -33929296 + MER39B LTR ERV1 1 653 0 6598 132 73 5 chr11 116855441 116856505 -33927048 - THE1C-int LTR MaLR -441 1139 3 1932 145 47 22 chr11 116856508 116856873 -33926680 - THE1C LTR MaLR -1 374 1 1134 318 17 6 chr11 116857084 116857430 -33926123 - LTR16B LTR ERVL -8 456 107 780 219 83 73 chr11 116857454 116857742 -33925811 + LTR8A LTR ERV1 430 720 -7 3527 135 26 3 chr11 116857954 116858531 -33925022 - LTR49 LTR ERV1 -2 593 4 2969 106 119 0 chr11 116858990 116859517 -33924036 + MER57B-int LTR ERV1 2676 3265 -4551 1734 195 50 24 chr11 116859516 116859965 -33923588 + MER57B-int LTR ERV1 1515 3368 -2578 * 420 85 122 0 chr11 116859944 116860026 -33923527 + MER57B-int LTR ERV1 2210 2301 -2916 * 1686 100 4 4 chr11 116860023 116860273 -33923280 + MER57B-int LTR ERV1 5081 5330 -2088 293 219 49 8 chr11 116860295 116860418 -33923135 + (TTAA)n Simple_repeat Simple_repeat 3 130 0 6880 56 2 8 chr11 116860518 116861864 -33921689 - L1PA7 LINE L1 -1 6153 4811 6100 126 6 55 chr11 116861864 116863075 -33920478 + L1P LINE L1 1588 2738 -3408 6067 145 49 8 chr11 116863112 116864385 -33919168 + MER57B-int LTR ERV1 5620 6991 -546 929 151 60 6 chr11 116864397 116864563 -33918990 + MER57B-int LTR ERV1 436 610 -6927 * 1096 124 43 0 chr11 116864559 116864720 -33918833 + MER57B-int LTR ERV1 6983 7150 -387 568 149 11 0 chr11 116864720 116864814 -33918739 + LTR54B LTR ERV1 5 99 -399 309 163 30 27 chr11 116864814 116864901 -33918652 + MER57B-int LTR ERV1 7265 7321 -216 229 286 16 0 chr11 116864993 116865056 -33918497 - MER117 DNA MER1_type -91 106 43 2588 128 51 5 chr11 116865099 116865513 -33918040 + MER57B LTR ERV1 2 434 0 3023 156 12 21 chr11 116865513 116865961 -33917592 + MER57B-int LTR ERV1 1 445 -7092 2275 68 0 65 chr11 116865961 116866283 -33917270 + AluY SINE Alu 3 303 -8 3023 156 12 21 chr11 116866283 116866352 -33917201 + MER57B-int LTR ERV1 445 513 -7024 917 192 57 6 chr11 116866452 116866629 -33916924 + MER57B-int LTR ERV1 487 672 -6865 * 1624 151 16 46 chr11 116866626 116866930 -33916623 + MER57B-int LTR ERV1 288 582 -5364 2419 180 60 9 chr11 116866930 116867397 -33916156 + MER57B-int LTR ERV1 1881 2371 -5166 * 4930 148 82 29 chr11 116867396 116868041 -33915512 + MER57B-int LTR ERV1 2042 2651 -2364 2120 146 0 0 chr11 116868041 116868349 -33915204 + AluSx SINE Alu 1 308 -4 4930 148 82 29 chr11 116868349 116869200 -33914353 + MER57B-int LTR ERV1 2651 3295 -1720 6587 122 50 2 chr11 116869209 116870212 -33913341 + MER57B-int LTR ERV1 5541 6591 -946 3964 98 61 3 chr11 116870313 116870907 -33912646 + MER57B-int LTR ERV1 6521 7148 -389 629 168 26 0 chr11 116870907 116871020 -33912533 + LTR54B LTR ERV1 3 118 -380 1504 127 127 0 chr11 116871021 116871265 -33912288 + MER57B-int LTR ERV1 7263 7537 0 2229 161 61 5 chr11 116871265 116871676 -33911877 + MER57B LTR ERV1 1 434 0 381 261 37 53 chr11 116873149 116873292 -33910261 + MIR SINE MIR 4 143 -65 1960 128 0 27 chr11 116873875 116874172 -33909381 + AluSq SINE Alu 2 290 -23 224 219 0 0 chr11 116875185 116875226 -33908327 - L2 LINE L2 -8 3264 3224 315 204 151 0 chr11 116875273 116875366 -33908187 + L1MC5 LINE L1 7003 7109 -852 1147 326 16 97 chr11 116875371 116875690 -33907863 - AluSq SINE Alu -10 293 1 620 121 0 0 chr11 116875690 116875781 -33907772 - AluSq/x SINE Alu -176 137 47 1182 119 0 17 chr11 116875781 116875957 -33907596 - AluSx SINE Alu -130 182 10 644 221 84 62 chr11 116876007 116876329 -33907224 + L1MC5 LINE L1 7186 7514 -447 35 0 0 0 chr11 116876482 116876517 -33907036 + AT_rich Low_complexity Low_complexity 1 35 0 889 201 16 42 chr11 116876542 116876731 -33906822 - AluJo SINE Alu -128 184 1 810 244 66 25 chr11 116876733 116877052 -33906501 + L1MC5 LINE L1 7586 7917 -44 635 93 10 21 chr11 116878177 116878274 -33905279 - L1MC1 LINE L1 -15 6318 6223 256 193 11 91 chr11 116878422 116878470 -33905083 + LTR33A LTR ERVL 443 482 -41 2134 171 67 10 chr11 116878470 116878873 -33904680 + MSTB LTR MaLR 1 426 0 256 193 11 91 chr11 116878873 116878912 -33904641 + LTR33A LTR ERVL 482 523 0 586 309 63 5 chr11 116879033 116879240 -33904313 - HERVL LTR ERVL -2398 3256 3038 889 324 76 28 chr11 116879463 116880227 -33903326 - HERVL LTR ERVL -2815 2839 1977 304 81 14 54 chr11 116880481 116880555 -33902998 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 244 179 18 18 chr11 116880846 116880902 -33902651 + (CATA)n Simple_repeat Simple_repeat 3 58 0 561 176 143 0 chr11 116881280 116881399 -33902154 - LTR55 LTR ERV -410 138 3 297 205 0 162 chr11 116881401 116881450 -33902103 + MIR SINE MIR 155 176 -86 1427 214 11 0 chr11 116881450 116881726 -33901827 + AluJo SINE Alu 5 283 -29 297 205 0 162 chr11 116881726 116881793 -33901760 + MIR SINE MIR 176 252 -10 224 260 0 0 chr11 116882605 116882655 -33900898 + MIR SINE MIR 99 148 -114 402 298 83 97 chr11 116882714 116883241 -33900312 - LTR67 LTR ERVL -10 547 28 391 294 76 0 chr11 116883338 116883457 -33900096 - MIR SINE MIR -106 156 29 388 318 0 16 chr11 116883874 116884000 -33899553 + MIR SINE MIR 20 143 -119 1501 201 30 38 chr11 116884122 116884490 -33899063 + MLT1A1 LTR MaLR 1 365 0 535 262 95 86 chr11 116885071 116885574 -33897979 + LTR67 LTR ERVL 50 557 0 340 274 32 100 chr11 116886652 116886842 -33896711 + L1MC4 LINE L1 7834 8010 -32 1269 191 5 0 chr11 116887147 116887357 -33896196 - AluJo SINE Alu -17 295 85 234 293 0 24 chr11 116887636 116887718 -33895835 + (CATATA)n Simple_repeat Simple_repeat 2 81 0 1585 335 72 22 chr11 116888199 116889204 -33894349 - HERVL LTR ERVL -911 4853 3799 1801 167 205 12 chr11 116889279 116889704 -33893849 - LTR22 LTR ERVK 0 509 3 276 280 36 4 chr11 116889932 116890094 -33893459 - HERVL LTR ERVL -2236 3528 3343 258 316 0 0 chr11 116890167 116890243 -33893310 + HERVL LTR ERVL 3208 3283 -2371 2278 108 0 3 chr11 116890250 116890547 -33893006 - AluSc SINE Alu -13 296 1 516 278 39 21 chr11 116890585 116890819 -33892734 - L1M4 LINE L1 -2009 4137 3900 244 291 46 33 chr11 116891088 116891239 -33892314 - L1M4 LINE L1 -2497 3649 3497 1788 157 7 11 chr11 116891255 116891541 -33892012 - AluJb SINE Alu -27 285 1 2259 102 3 0 chr11 116891740 116892033 -33891520 - AluSp SINE Alu -19 294 1 402 219 163 0 chr11 116892331 116892491 -33891062 - LTR50 LTR ERVL 0 795 610 526 237 72 7 chr11 116892740 116892892 -33890661 - LTR50 LTR ERVL -632 163 2 191 88 29 0 chr11 116893003 116893037 -33890516 + (CAA)n Simple_repeat Simple_repeat 2 36 0 692 302 54 51 chr11 116893955 116894346 -33889207 + LTR16B LTR ERVL 1 392 -72 856 238 0 0 chr11 116894356 116894524 -33889029 - FRAM SINE Alu -9 167 1 1347 213 41 38 chr11 116896134 116896477 -33887076 - MER2 DNA MER2_type 0 344 1 242 234 91 26 chr11 116896645 116896722 -33886831 - L2 LINE L2 0 3313 3232 1367 201 40 111 chr11 116896802 116897345 -33886208 - MLT1D LTR MaLR 0 505 1 236 279 16 0 chr11 116897378 116897439 -33886114 - L2 LINE L2 0 3313 3252 306 366 57 23 chr11 116897460 116897635 -33885918 - L2 LINE L2 -566 2748 2568 231 208 26 78 chr11 116899389 116899466 -33884087 + L3 LINE CR1 1271 1343 -234 248 380 65 0 chr11 116899483 116899591 -33883962 - L2 LINE L2 -15 3257 3143 2188 121 0 7 chr11 116900041 116900338 -33883215 - AluSg SINE Alu -15 295 1 266 358 52 8 chr11 116900946 116901080 -33882473 - L2 LINE L2 0 3272 3133 395 293 239 27 chr11 116902091 116902313 -33881240 + L2 LINE L2 3004 3272 0 181 372 83 38 chr11 116902494 116902889 -33880664 - L2 LINE L2 -828 2486 2074 770 269 92 18 chr11 116903028 116903310 -33880243 + LTR10D LTR ERV1 164 466 -47 28242 220 24 29 chr11 116903317 116910549 -33873004 + LTR54B-int LTR ERV1 275 7784 -1 1125 212 19 40 chr11 116910682 116911047 -33872506 + LTR10B LTR ERV1 157 547 0 636 284 65 19 chr11 116911391 116911606 -33871947 + MIR SINE MIR 29 253 -9 894 301 88 44 chr11 116912339 116913819 -33869734 - L1MEd LINE L1 -1951 4178 2634 846 308 60 67 chr11 116914498 116915397 -33868156 - L1MEd LINE L1 -766 1724 731 318 337 100 8 chr11 116916082 116916331 -33867222 - L1M4 LINE L1 -1299 4847 4576 510 286 92 73 chr11 116916807 116917005 -33866548 - MLT1L LTR MaLR -42 573 380 2148 127 3 3 chr11 116917005 116917304 -33866249 - AluSc SINE Alu -10 299 1 510 286 92 73 chr11 116917304 116917542 -33866011 - MLT1L LTR MaLR -235 380 129 297 0 0 0 chr11 116917872 116917905 -33865648 + (TG)n Simple_repeat Simple_repeat 2 34 0 32 47 0 16 chr11 116918093 116918118 -33865435 + AT_rich Low_complexity Low_complexity 1 25 -38 2075 141 3 0 chr11 116918118 116918409 -33865144 - AluSq SINE Alu -17 296 5 32 47 0 16 chr11 116918409 116918447 -33865106 + AT_rich Low_complexity Low_complexity 25 63 0 385 288 89 52 chr11 116918705 116919147 -33864406 - L1M4 LINE L1 -2558 3588 3125 794 169 284 0 chr11 116919233 116919434 -33864119 + LTR54B LTR ERV1 1 258 -240 696 284 52 34 chr11 116919437 116919825 -33863728 - HAL1b LINE L1 -758 590 196 24 32 0 0 chr11 116919997 116920028 -33863525 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr11 116920558 116920579 -33862974 + AT_rich Low_complexity Low_complexity 1 21 0 199 296 56 0 chr11 116921367 116921438 -33862115 + MIR SINE MIR 96 170 -92 180 152 0 0 chr11 116921539 116921572 -33861981 + (TTA)n Simple_repeat Simple_repeat 1 33 0 212 287 70 70 chr11 116923113 116923270 -33860283 + MIR SINE MIR 97 253 -9 302 277 67 25 chr11 116924122 116924241 -33859312 + MIR SINE MIR 29 152 -110 181 380 109 11 chr11 116924500 116924684 -33858869 - L2 LINE L2 -212 3060 2859 1397 231 39 3 chr11 116925215 116925526 -33858027 - MER21B LTR ERV1 -490 373 52 282 320 0 0 chr11 116925531 116925606 -33857947 - MER21B LTR ERV1 -769 94 20 252 196 36 18 chr11 116925642 116925698 -33857855 - MER21B LTR ERV1 -795 68 12 1485 197 51 17 chr11 116925707 116926063 -33857490 - LOR1b LTR ERV1 0 461 94 2336 141 76 0 chr11 116926064 116926461 -33857092 + MSTA LTR MaLR 1 427 -1 8226 178 30 11 chr11 116926462 116928077 -33855476 + MSTA-int LTR MaLR 1 1645 -6 1921 164 112 0 chr11 116928083 116928468 -33855085 + MSTA LTR MaLR 1 428 0 461 176 0 11 chr11 116928473 116928564 -33854989 - LOR1a LTR ERV1 -407 90 1 603 169 0 25 chr11 116928579 116928697 -33854856 - MER31A LTR ERV1 -370 115 1 181 342 13 0 chr11 116928716 116928792 -33854761 - L2 LINE L2 -954 2360 2284 1035 260 70 31 chr11 116928811 116929226 -33854327 - MLT1J2 LTR MaLR -19 431 1 215 202 32 53 chr11 116929270 116929364 -33854189 - L2 LINE L2 -1083 2231 2140 501 316 61 24 chr11 116929465 116929712 -33853841 - MIR SINE MIR 0 262 7 187 259 0 69 chr11 116929913 116929971 -33853582 - L2 LINE L2 -73 3240 3187 364 278 0 11 chr11 116931020 116931110 -33852443 + MIR SINE MIR 55 143 -119 5752 79 34 3 chr11 116931217 116931973 -33851580 + LTR17 LTR ERV1 1 780 0 2419 91 0 3 chr11 116932162 116932470 -33851083 - AluSc SINE Alu -2 307 1 270 360 154 0 chr11 116933536 116933672 -33849881 + L2 LINE L2 3116 3272 0 281 316 65 32 chr11 116934201 116934356 -33849197 - MIR SINE MIR -92 170 11 212 288 42 34 chr11 116934885 116935003 -33848550 - L3b LINE CR1 -216 1367 1249 416 371 128 16 chr11 116935665 116935788 -33847765 + L2 LINE L2 2505 2613 -701 597 14 0 0 chr11 116935788 116935858 -33847695 + (TA)n Simple_repeat Simple_repeat 2 71 0 416 371 128 16 chr11 116935858 116936055 -33847498 + L2 LINE L2 2613 2861 -453 227 373 106 37 chr11 116936153 116936370 -33847183 + L2 LINE L2 3036 3267 -5 1280 116 80 9 chr11 116936411 116936636 -33846917 + L1MC1 LINE L1 6093 6333 0 357 333 74 45 chr11 116936652 116936895 -33846658 + L2 LINE L2 2831 3080 -192 244 350 121 0 chr11 116937193 116937333 -33846220 + MIR SINE MIR 50 206 -56 319 214 152 9 chr11 116937831 116937943 -33845610 - MIR SINE MIR -50 212 85 230 368 32 8 chr11 116938845 116938970 -33844583 + MIR SINE MIR 90 217 -45 1812 272 120 78 chr11 116939304 116940924 -33842629 + L2 LINE L2 1606 3305 -8 853 109 22 0 chr11 116941036 116941174 -33842379 - MER1A DNA MER1_type -14 515 375 1810 117 4 0 chr11 116941201 116941458 -33842095 - MER1A DNA MER1_type -228 301 44 214 293 57 28 chr11 116941485 116941591 -33841962 - MIR3 SINE MIR -8 200 92 207 327 72 51 chr11 116942867 116943061 -33840492 - MIR SINE MIR -62 200 3 888 95 0 0 chr11 116945089 116945205 -33838348 + AluY SINE Alu 187 302 -9 6177 103 52 2 chr11 116945404 116946443 -33837110 - L1MA2 LINE L1 0 7723 6633 2233 139 31 19 chr11 116946443 116946803 -33836750 + THE1B LTR MaLR 1 364 0 8302 135 101 3 chr11 116946805 116948172 -33835381 + THE1B-int LTR MaLR 4 1517 -63 2245 140 0 6 chr11 116948172 116948486 -33835067 + AluSx SINE Alu 1 312 0 8302 135 101 3 chr11 116948486 116948544 -33835009 + THE1B-int LTR MaLR 1517 1568 -12 1251 89 0 52 chr11 116948648 116948781 -33834772 + THE1B-int LTR MaLR 1379 1498 -82 2125 152 0 16 chr11 116948781 116949096 -33834457 + AluSx SINE Alu 1 310 -2 1251 89 0 52 chr11 116949096 116949175 -33834378 + THE1B-int LTR MaLR 1498 1580 0 1795 166 69 26 chr11 116949175 116949524 -33834029 + THE1B LTR MaLR 1 364 0 227 157 20 0 chr11 116949525 116949576 -33833977 - L1MA2 LINE L1 -929 6636 6585 1579 113 4 0 chr11 116949577 116949806 -33833747 - L1PA8 LINE L1 -2 6170 5941 4044 162 100 2 chr11 116949811 116950634 -33832919 - L1MA2 LINE L1 -4963 2602 1700 747 261 36 9 chr11 116950628 116950958 -33832595 - L1M4 LINE L1 -2100 4046 3708 * 247 191 0 0 chr11 116951011 116951053 -33832500 - Tigger3(Golem) DNA MER2_type -82 2947 2906 * 318 214 0 0 chr11 116951052 116951108 -33832445 - Tigger3(Golem) DNA MER2_type -2973 56 1 597 247 68 26 chr11 116951190 116951380 -33832173 + MER6B DNA MER2_type 13 210 0 886 300 0 0 chr11 116951454 116951687 -33831866 + LTR53 LTR ERVL 189 421 -98 675 232 30 20 chr11 116952491 116952689 -33830864 + MLT2B3 LTR ERVL 1 200 -354 345 180 0 0 chr11 116952693 116952754 -33830799 + MLT2D LTR ERVL 238 298 -255 4375 176 25 9 chr11 116952764 116953580 -33829973 + ERVL LTR ERVL 4296 5124 -640 292 122 93 0 chr11 116953611 116953932 -33829621 + (TA)n Simple_repeat Simple_repeat 1 350 0 31 58 0 0 chr11 116953944 116953996 -33829557 + AT_rich Low_complexity Low_complexity 1 52 0 311 175 63 22 chr11 116954012 116954460 -33829093 + (TATAA)n Simple_repeat Simple_repeat 1 466 0 274 103 91 12 chr11 116954500 116954665 -33828888 + (TA)n Simple_repeat Simple_repeat 2 179 0 180 102 61 0 chr11 116954688 116954737 -33828816 + (TATAA)n Simple_repeat Simple_repeat 3 54 0 237 102 115 0 chr11 116954772 116954929 -33828624 + (TA)n Simple_repeat Simple_repeat 1 175 0 736 181 0 27 chr11 116954930 116955079 -33828474 - ERVL LTR ERVL -640 5124 4980 241 145 72 7 chr11 116955095 116955233 -33828320 + (TA)n Simple_repeat Simple_repeat 1 147 0 6780 214 16 16 chr11 116955336 116957838 -33825715 - L1PA16 LINE L1 -2 6815 4332 3568 241 30 12 chr11 116957845 116958982 -33824571 - L1PA16 LINE L1 -4110 2687 1509 361 259 28 35 chr11 116959845 116959988 -33823565 - L1PA16 LINE L1 -5276 1511 1370 1103 360 31 16 chr11 116960026 116960604 -33822949 - L1PA16 LINE L1 -6200 587 1 490 234 92 27 chr11 116961157 116961341 -33822212 + MER117 DNA MER1_type 2 197 0 373 270 0 0 chr11 116961360 116961434 -33822119 - MIR3 SINE MIR -26 182 109 27 0 0 0 chr11 116962025 116962052 -33821501 + AT_rich Low_complexity Low_complexity 1 27 0 203 321 9 54 chr11 116963015 116963127 -33820426 - MIR3 SINE MIR -97 111 5 372 248 145 0 chr11 116963392 116963509 -33820044 - MIR3 SINE MIR -3 205 72 431 328 27 6 chr11 116963600 116963783 -33819770 + MER117 DNA MER1_type 11 197 0 1745 184 24 12 chr11 116963948 116964285 -33819268 + MER61A LTR ERV1 1 341 -2 543 336 146 48 chr11 116964910 116964983 -33818570 + L2 LINE L2 2307 2371 -901 1698 166 65 45 chr11 116964983 116965338 -33818215 + MLT1A1 LTR MaLR 1 362 -3 543 336 146 48 chr11 116965338 116966145 -33817408 + L2 LINE L2 2371 3270 -2 2138 114 0 17 chr11 116966525 116966822 -33816731 - AluSc SINE Alu -17 292 1 193 333 0 0 chr11 116967163 116967214 -33816339 + L3 LINE CR1 1526 1576 -1 257 294 37 57 chr11 116967246 116967383 -33816170 + MIR3 SINE MIR 15 148 -93 262 272 6 2 chr11 116967408 116967476 -33816077 + MIR SINE MIR 91 161 -47 22 0 0 0 chr11 116967727 116967749 -33815804 + AT_rich Low_complexity Low_complexity 1 22 0 253 290 59 45 chr11 116968902 116969093 -33814460 - MIR3 SINE MIR -62 200 3 368 279 75 19 chr11 116970388 116970549 -33813004 + MIR SINE MIR 82 251 -11 203 167 33 100 chr11 116971417 116971477 -33812076 - L2 LINE L2 0 3313 3258 624 181 6 56 chr11 116971665 116972029 -33811524 + (TATATG)n Simple_repeat Simple_repeat 1 345 0 567 246 23 0 chr11 116972036 116972211 -33811342 + (TA)n Simple_repeat Simple_repeat 2 180 0 216 275 75 25 chr11 116973528 116973608 -33809945 - L2 LINE L2 -936 2378 2295 716 307 128 35 chr11 116973666 116974174 -33809379 - L2 LINE L2 -1138 2176 1622 506 327 186 21 chr11 116974239 116974673 -33808880 + L2 LINE L2 1747 2108 -1206 1653 211 58 3 chr11 116974673 116975019 -33808534 - MLT1A1 LTR MaLR 0 365 1 506 327 186 21 chr11 116975019 116975281 -33808272 + L2 LINE L2 2108 2558 -756 351 250 115 40 chr11 116977143 116977343 -33806210 - LTR33A LTR ERVL -9 514 300 276 273 128 15 chr11 116977341 116977641 -33805912 - LTR50 LTR ERVL -350 445 7 * 2592 68 0 0 chr11 116977652 116977963 -33805590 + AluY SINE Alu 1 311 0 3003 188 40 35 chr11 116978176 116978592 -33804961 - LTR58 LTR ERV1 0 679 257 1573 185 7 3 chr11 116978592 116978878 -33804675 - AluSx SINE Alu -25 287 1 3003 188 40 35 chr11 116978878 116979137 -33804416 - LTR58 LTR ERV1 -422 257 1 2240 120 3 0 chr11 116979166 116979466 -33804087 - AluSx SINE Alu -11 301 1 2103 277 45 14 chr11 116979470 116980227 -33803326 - LTR58-int LTR ERV1 -24 6652 5873 1323 312 69 48 chr11 116981117 116982919 -33800634 - LTR58-int LTR ERV1 -1636 6120 4554 620 353 33 27 chr11 116983210 116984297 -33799256 - LTR58-int LTR ERV1 -3633 3930 2509 710 258 38 60 chr11 116984988 116985306 -33798247 - MER66-int LTR ERV1 -4029 2647 2337 342 338 32 0 chr11 116985545 116985699 -33797854 - MER66-int LTR ERV1 -4578 2098 1940 387 366 11 21 chr11 116986024 116986308 -33797245 - MER66-int LTR ERV1 -5048 1628 1348 865 214 12 0 chr11 116987235 116987403 -33796150 - MER66-int LTR ERV1 -2767 1518 1349 3265 188 11 47 chr11 116987970 116988671 -33794882 - LTR58 LTR ERV1 -1 678 3 360 291 80 40 chr11 116989462 116989613 -33793940 + MER5A DNA MER1_type 27 183 -6 230 0 0 32 chr11 116989776 116989807 -33793746 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 22 56 0 0 chr11 116990525 116990561 -33792992 + AT_rich Low_complexity Low_complexity 1 36 0 253 299 22 13 chr11 116990603 116990845 -33792708 + L1ME LINE L1 5491 5740 -381 282 154 23 115 chr11 116990930 116991060 -33792493 - Charlie7 DNA MER1_type -75 2537 2420 373 186 64 135 chr11 116991170 116991956 -33791597 - L1MB7 LINE L1 0 6184 5448 1122 171 40 0 chr11 116991956 116992178 -33791375 + MLT1B LTR MaLR 1 231 -159 1261 221 7 25 chr11 116992292 116992573 -33790980 + AluJo SINE Alu 16 291 -21 1212 160 4 13 chr11 116994256 116994487 -33789066 + MLT1B LTR MaLR 162 390 0 936 191 66 11 chr11 116994503 116994826 -33788727 - L1MB7 LINE L1 -724 5446 5106 800 247 36 58 chr11 116994854 116995245 -33788308 - L1ME2 LINE L1 -5 6161 5755 2876 263 101 39 chr11 116995255 116996914 -33786639 - Charlie7 DNA MER1_type -381 2231 471 240 317 85 0 chr11 116997588 116997670 -33785883 + L2 LINE L2 3225 3313 0 27 0 0 0 chr11 116997800 116997827 -33785726 + AT_rich Low_complexity Low_complexity 1 27 0 246 220 25 8 chr11 116997913 116997984 -33785569 + CT-rich Low_complexity Low_complexity 1 72 0 378 42 0 0 chr11 116997984 116998032 -33785521 + (TG)n Simple_repeat Simple_repeat 2 49 0 6815 74 7 20 chr11 116998687 117000343 -33783210 - SVA Other Other -723 1386 1 2452 66 0 17 chr11 117001312 117001614 -33781939 + AluY SINE Alu 1 297 -14 770 212 172 24 chr11 117001620 117001929 -33781624 + MER66A LTR ERV1 171 385 -93 2051 124 7 10 chr11 117001929 117002235 -33781318 + AluSq SINE Alu 1 305 -8 1119 150 0 0 chr11 117002236 117002396 -33781157 + AluSc SINE Alu 132 291 -18 458 180 11 11 chr11 117002400 117002489 -33781064 + MER66B LTR ERV1 391 479 -7 21 71 0 0 chr11 117002988 117003030 -33780523 + AT_rich Low_complexity Low_complexity 1 42 0 2124 124 0 0 chr11 117003335 117003625 -33779928 + AluSg1 SINE Alu 1 290 -19 1209 269 58 55 chr11 117003627 117004233 -33779320 + L2 LINE L2 2703 3304 -9 1874 183 39 17 chr11 117004242 117004658 -33778895 + L1MA9 LINE L1 5888 6312 0 1906 150 0 14 chr11 117004719 117005047 -33778506 - AluSx SINE Alu 0 324 1 2083 124 40 28 chr11 117005528 117005942 -33777611 - THE1B LTR MaLR -6 422 1 710 227 18 25 chr11 117006004 117006167 -33777386 + FRAM SINE Alu 5 166 0 1354 214 18 14 chr11 117006304 117006584 -33776969 + AluJo SINE Alu 5 285 -17 215 222 0 19 chr11 117006737 117006791 -33776762 + GA-rich Low_complexity Low_complexity 3 55 0 216 346 31 16 chr11 117006809 117006936 -33776617 - MIR SINE MIR -15 247 119 498 268 70 0 chr11 117007491 117007633 -33775920 - MIR SINE MIR -2 260 109 1430 246 61 38 chr11 117009017 117009524 -33774029 - MER74A LTR ERVL 0 558 40 455 251 26 28 chr11 117009746 117009991 -33773562 - MER41B LTR ERV1 -208 427 49 25 0 0 0 chr11 117009998 117010023 -33773530 + AT_rich Low_complexity Low_complexity 1 25 0 2610 271 101 63 chr11 117010784 117011846 -33771707 - L2 LINE L2 -1 3312 2114 230 216 0 0 chr11 117011846 117011897 -33771656 + L1M4 LINE L1 5706 5756 -418 2610 271 101 63 chr11 117011897 117012318 -33771235 - L2 LINE L2 -1199 2114 1710 243 167 0 0 chr11 117013009 117013051 -33770502 - 5S rRNA rRNA -79 42 1 641 349 44 6 chr11 117013327 117013691 -33769862 - MERVL LTR ERVL -2280 3484 3107 291 98 176 0 chr11 117013693 117013744 -33769809 + MER67D LTR ERV1 1 60 -454 333 118 0 0 chr11 117013746 117013797 -33769756 + (TTTCC)n Simple_repeat Simple_repeat 4 54 0 282 56 0 0 chr11 117013796 117013832 -33769721 + (TCC)n Simple_repeat Simple_repeat 1 36 0 * 1558 209 3 34 chr11 117013832 117014152 -33769401 - AluJo SINE Alu -2 310 1 1048 195 89 124 chr11 117014152 117014193 -33769360 + MER67D LTR ERV1 45 86 -428 644 0 0 13 chr11 117014193 117014270 -33769283 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 1048 195 89 124 chr11 117014270 117014598 -33768955 + MER67D LTR ERV1 86 396 -118 2409 64 0 0 chr11 117014598 117014893 -33768660 + AluY SINE Alu 3 297 -14 1048 195 89 124 chr11 117014893 117015005 -33768548 + MER67D LTR ERV1 396 510 -4 292 301 37 7 chr11 117015143 117015279 -33768274 - MERVL LTR ERVL -4473 1012 873 1824 175 125 8 chr11 117015309 117015692 -33767861 - MSTA LTR MaLR 0 428 1 251 237 21 21 chr11 117015976 117016069 -33767484 - MERVL LTR ERVL -5078 576 484 229 0 83 0 chr11 117016459 117016495 -33767058 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 34801 31 0 1 chr11 117016495 117021688 -33761865 - L1PA3 LINE L1 -10 6145 955 21 0 0 0 chr11 117021751 117021772 -33761781 + AT_rich Low_complexity Low_complexity 1 21 0 233 224 0 0 chr11 117022129 117022178 -33761375 + (CAATT)n Simple_repeat Simple_repeat 3 51 0 956 241 64 30 chr11 117022178 117022506 -33761047 - MER21B LTR ERV1 -145 718 380 676 167 50 158 chr11 117022562 117022801 -33760752 - MER21B LTR ERV1 -632 231 19 6184 129 54 30 chr11 117022801 117022932 -33760621 + Tigger3b DNA MER2_type 2 128 -2900 1812 144 238 46 chr11 117022932 117023454 -33760099 + LTR29 LTR ERV1 1 622 0 6184 129 54 30 chr11 117023454 117024034 -33759519 + Tigger3b DNA MER2_type 128 756 -2272 2094 169 19 3 chr11 117024034 117024401 -33759152 - MER83C LTR ERV1 0 373 1 6184 129 54 30 chr11 117024401 117024889 -33758664 + Tigger3b DNA MER2_type 756 1231 0 244 254 51 7 chr11 117025195 117025333 -33758220 + L1M4 LINE L1 2217 2360 -3786 268 221 26 13 chr11 117025701 117025778 -33757775 - L1MEd LINE L1 -6035 84 7 283 333 36 36 chr11 117025779 117026004 -33757549 + L2 LINE L2 2623 2847 -467 204 337 71 60 chr11 117026375 117026657 -33756896 + L2 LINE L2 2968 3252 -20 244 225 94 47 chr11 117027423 117027511 -33756042 - MIR SINE MIR -69 139 64 426 311 147 48 chr11 117027621 117028405 -33755148 - L2 LINE L2 0 3313 2453 271 325 94 8 chr11 117028769 117028886 -33754667 + L2 LINE L2 2713 2839 -475 1268 134 40 84 chr11 117029069 117029244 -33754309 - L1MA7 LINE L1 -6 6285 6129 1558 193 7 30 chr11 117029244 117029545 -33754008 + AluJo SINE Alu 1 294 -18 1268 134 40 84 chr11 117029545 117029690 -33753863 - L1MA7 LINE L1 -162 6129 5979 336 351 148 54 chr11 117030616 117032015 -33751538 - L2 LINE L2 0 3272 1737 220 205 0 0 chr11 117032111 117032150 -33751403 + GA-rich Low_complexity Low_complexity 2 40 0 1840 174 58 6 chr11 117033291 117033636 -33749917 - MLT1A1 LTR MaLR 0 365 3 670 233 63 87 chr11 117033741 117033994 -33749559 - MER102a DNA MER1_type 0 330 84 1554 214 8 32 chr11 117034798 117035172 -33748381 + MLT1A1 LTR MaLR 1 365 0 347 161 0 0 chr11 117036975 117037031 -33746522 + L2 LINE L2 3217 3272 0 291 297 0 14 chr11 117037145 117037219 -33746334 + MIR SINE MIR 40 112 -150 1730 210 91 0 chr11 117038020 117038382 -33745171 - MSTD LTR MaLR 0 396 2 300 298 122 15 chr11 117038777 117038908 -33744645 - L2 LINE L2 -9 3263 3119 23 0 0 0 chr11 117039437 117039460 -33744093 + AT_rich Low_complexity Low_complexity 1 23 0 446 328 154 6 chr11 117039883 117040246 -33743307 - L1M4 LINE L1 -3108 3038 2622 24 32 0 0 chr11 117040893 117040924 -33742629 + AT_rich Low_complexity Low_complexity 1 31 0 743 140 0 0 chr11 117040931 117041038 -33742515 - AluJb SINE Alu -195 117 11 35 41 0 0 chr11 117041245 117041294 -33742259 + AT_rich Low_complexity Low_complexity 1 49 0 879 234 70 13 chr11 117041430 117041729 -33741824 + MLT1C LTR MaLR 7 322 -145 1764 186 68 2 chr11 117041743 117042142 -33741411 - L1MA9 LINE L1 -22 6290 5866 819 189 0 13 chr11 117042171 117042330 -33741223 + MLT1C LTR MaLR 311 467 0 257 330 115 24 chr11 117042430 117042639 -33740914 + L2 LINE L2 2247 2474 -840 1746 62 0 0 chr11 117043181 117043391 -33740162 - AluY SINE Alu -101 210 1 416 165 0 132 chr11 117043439 117043560 -33739993 - FRAM SINE Alu -13 163 59 322 293 129 0 chr11 117043615 117043731 -33739822 + L2 LINE L2 3179 3309 -4 2130 121 0 7 chr11 117044643 117044941 -33738612 - AluSq SINE Alu -17 296 1 23 68 0 0 chr11 117045011 117045055 -33738498 + AT_rich Low_complexity Low_complexity 1 44 0 305 308 106 3 chr11 117045381 117045558 -33737995 - MIR SINE MIR -19 243 2 327 263 47 17 chr11 117045724 117045854 -33737699 + MIR SINE MIR 16 151 -66 1134 190 70 103 chr11 117046554 117047011 -33736542 - MLT1C LTR MaLR 0 467 26 2235 108 3 0 chr11 117047205 117047511 -33736042 + AluSx SINE Alu 1 307 -5 718 276 39 35 chr11 117047595 117047852 -33735701 + MIR SINE MIR 2 259 -3 2058 98 0 0 chr11 117048006 117048270 -33735283 + AluSq SINE Alu 35 298 -15 2730 159 26 6 chr11 117049182 117049685 -33733868 - L1PA16 LINE L1 -1 6165 5653 252 276 237 0 chr11 117049940 117050016 -33733537 + L2 LINE L2 3147 3240 -32 2135 119 0 0 chr11 117050025 117050310 -33733243 - AluSc SINE Alu -24 285 1 285 98 0 0 chr11 117050328 117050369 -33733184 + (CA)n Simple_repeat Simple_repeat 2 42 0 344 281 141 7 chr11 117052021 117052156 -33731397 - MIR3 SINE MIR -17 191 39 718 304 42 23 chr11 117052537 117052754 -33730799 - MIR SINE MIR -6 256 36 743 272 129 31 chr11 117052936 117053682 -33729871 - L1M4 LINE L1 -840 5306 4488 25 0 0 0 chr11 117053791 117053816 -33729737 + AT_rich Low_complexity Low_complexity 1 25 0 2021 129 0 20 chr11 117053906 117054209 -33729344 + AluSx SINE Alu 1 297 -15 314 174 0 43 chr11 117054267 117054336 -33729217 - FLAM_A SINE Alu 0 133 68 434 167 59 0 chr11 117054578 117054680 -33728873 - L1M4 LINE L1 -2160 3986 3879 444 362 96 19 chr11 117054899 117055316 -33728237 - HAL1 LINE L1 -845 1662 1214 519 179 0 0 chr11 117055321 117055405 -33728148 - AluS SINE Alu -228 84 1 250 329 104 9 chr11 117055587 117055809 -33727744 - L1MEd LINE L1 -5286 833 591 683 291 36 106 chr11 117055823 117056353 -33727200 - L2 LINE L2 -1 3312 2820 1011 311 69 24 chr11 117056363 117056896 -33726657 - L1MEd LINE L1 -5561 558 2 2296 103 3 0 chr11 117057331 117057632 -33725921 + AluSp SINE Alu 1 302 -11 293 247 62 0 chr11 117058095 117058192 -33725361 + L2 LINE L2 2284 2386 -928 23 0 0 0 chr11 117059076 117059099 -33724454 + AT_rich Low_complexity Low_complexity 1 23 0 2301 84 7 10 chr11 117059236 117059533 -33724020 - AluSc SINE Alu -13 296 1 1567 196 124 7 chr11 117063020 117063480 -33720073 + Charlie1b DNA MER1_type 5 518 -5 234 343 89 41 chr11 117063756 117063925 -33719628 - MER5A DNA MER1_type -1 188 12 261 240 30 100 chr11 117063937 117064037 -33719516 + L2 LINE L2 3180 3272 0 265 294 18 37 chr11 117064210 117064319 -33719234 - MIR SINE MIR -6 256 150 1147 268 95 31 chr11 117064710 117065722 -33717831 - L1M4 LINE L1 -2252 3894 2818 250 294 0 0 chr11 117066414 117066482 -33717071 + L2 LINE L2 1776 1843 -1471 395 350 0 13 chr11 117066749 117066906 -33716647 + L2 LINE L2 2665 2819 -495 1612 204 78 30 chr11 117066990 117067387 -33716166 + MER70A LTR ERVL 57 472 0 2295 60 0 21 chr11 117067489 117067797 -33715756 - AluY SINE Alu 0 307 6 2073 184 0 25 chr11 117068093 117068495 -33715058 + MER57A LTR ERV1 1 392 -11 1388 165 54 198 chr11 117069114 117069380 -33714173 - LTR8A LTR ERV1 0 727 424 8340 45 0 1 chr11 117069380 117071183 -33712370 - L1PA5 LINE L1 -2 6152 4351 1388 165 54 198 chr11 117071183 117071765 -33711788 - LTR8A LTR ERV1 -303 424 1 753 173 207 0 chr11 117071932 117072111 -33711442 - MER20 DNA MER1_type 0 219 4 2916 128 64 0 chr11 117072466 117072982 -33710571 + MER34C LTR ERV1 37 585 0 2348 163 114 86 chr11 117074951 117075493 -33708060 - LTR48 LTR ERV1 0 787 216 2499 141 41 2 chr11 117075493 117075905 -33707648 - MSTA LTR MaLR 0 428 1 2348 163 114 86 chr11 117075905 117076128 -33707425 - LTR48 LTR ERV1 -571 216 1 2068 78 0 8 chr11 117077121 117077377 -33706176 + AluSp SINE Alu 34 287 -26 2851 121 76 12 chr11 117077735 117078249 -33705304 + LTR10A LTR ERV1 1 547 -62 272 282 0 14 chr11 117078790 117078861 -33704692 + CT-rich Low_complexity Low_complexity 5 74 0 970 113 21 138 chr11 117078944 117079183 -33704370 + L1MA1 LINE L1 6091 6301 -1 23 33 0 0 chr11 117079263 117079293 -33704260 + AT_rich Low_complexity Low_complexity 1 30 0 390 239 192 0 chr11 117079518 117079685 -33703868 + MIR SINE MIR 54 252 -10 284 208 0 14 chr11 117080748 117080820 -33702733 + CT-rich Low_complexity Low_complexity 2 72 0 581 271 85 20 chr11 117081571 117081770 -33701783 + MIR SINE MIR 3 214 -48 234 125 0 0 chr11 117081775 117081807 -33701746 - MER5B DNA MER1_type -1 177 146 1454 181 113 18 chr11 117081814 117082140 -33701413 + MSTD LTR MaLR 1 357 -39 333 319 26 21 chr11 117082306 117082497 -33701056 + HERV30 LTR ERV1 5630 5821 -2436 2159 118 0 0 chr11 117082497 117082803 -33700750 - AluY SINE Alu -3 308 3 865 192 54 127 chr11 117082804 117083131 -33700422 - MER67D LTR ERV1 -128 386 87 608 0 0 14 chr11 117083131 117083204 -33700349 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 865 192 54 127 chr11 117083204 117083245 -33700308 - MER67D LTR ERV1 -427 87 45 1558 209 3 34 chr11 117083245 117083565 -33699988 + AluJo SINE Alu 1 310 -2 291 54 0 0 chr11 117083567 117083604 -33699949 + (GGA)n Simple_repeat Simple_repeat 3 39 0 * 423 98 0 0 chr11 117083603 117083664 -33699889 + (GGAAA)n Simple_repeat Simple_repeat 4 64 0 291 98 176 0 chr11 117083666 117083717 -33699836 - MER67D LTR ERV1 -454 60 1 498 359 46 6 chr11 117083719 117084045 -33699508 + ERVL LTR ERVL 3107 3445 -2319 2399 70 3 0 chr11 117084145 117084446 -33699107 + AluY SINE Alu 1 302 -9 400 338 74 24 chr11 117084447 117084743 -33698810 + L1 LINE L1 4239 4549 -1597 526 290 69 45 chr11 117086010 117086255 -33697298 - MIR SINE MIR -10 252 2 292 244 35 17 chr11 117086392 117086507 -33697046 + (TCTA)n Simple_repeat Simple_repeat 2 118 0 257 286 13 0 chr11 117086560 117086637 -33696916 + MLT1K LTR MaLR 163 240 -348 845 260 58 5 chr11 117087052 117087275 -33696278 + MIR SINE MIR 2 236 -26 1346 190 96 59 chr11 117089201 117089679 -33693874 - L1ME2 LINE L1 -2 6162 5667 2988 148 25 8 chr11 117089696 117090210 -33693343 - L1MD3 LINE L1 -15 7980 7458 828 166 0 45 chr11 117090211 117090368 -33693185 + MSTB1 LTR MaLR 1 150 -276 383 74 0 0 chr11 117090370 117090424 -33693129 - MADE1 DNA Mariner 0 80 27 2394 68 7 0 chr11 117090438 117090731 -33692822 - AluSq SINE Alu -18 295 1 963 150 52 56 chr11 117090774 117090987 -33692566 + MSTB1 LTR MaLR 158 369 -63 715 139 0 0 chr11 117090987 117091102 -33692451 - AluSg/x SINE Alu -1 309 195 1983 127 0 0 chr11 117091102 117091369 -33692184 - AluSx SINE Alu -45 267 1 478 69 28 0 chr11 117091369 117091441 -33692112 + MSTB1 LTR MaLR 359 432 0 1199 214 71 75 chr11 117091498 117091909 -33691644 - MLT1D LTR MaLR -96 409 1 2864 207 50 80 chr11 117091935 117092853 -33690700 - L1MC3 LINE L1 -809 6976 6086 2701 202 60 14 chr11 117092955 117094003 -33689550 - L1ME2 LINE L1 -743 5403 4563 191 380 23 23 chr11 117094671 117094800 -33688753 + L2 LINE L2 2716 2844 -470 282 301 30 94 chr11 117094830 117095033 -33688520 + L2 LINE L2 3041 3230 -42 249 305 62 46 chr11 117095830 117095998 -33687555 + MIR SINE MIR 9 170 -38 1923 141 11 0 chr11 117098047 117098331 -33685222 - AluSx SINE Alu -25 287 1 215 380 27 40 chr11 117099025 117099249 -33684304 + L2 LINE L2 2816 3036 -236 854 177 244 12 chr11 117099324 117099579 -33683974 - MLT1B LTR MaLR -9 617 67 285 95 24 0 chr11 117100611 117100653 -33682900 - tRNA-Met-e tRNA tRNA -32 43 1 183 80 0 0 chr11 117101074 117101099 -33682454 + (TATG)n Simple_repeat Simple_repeat 4 28 0 383 364 106 50 chr11 117102017 117102374 -33681179 - L2 LINE L2 -32 3240 2864 2087 102 11 0 chr11 117102446 117102731 -33680822 + AluSg SINE Alu 1 288 -22 23 54 0 0 chr11 117103401 117103438 -33680115 + AT_rich Low_complexity Low_complexity 1 37 0 438 311 187 21 chr11 117103489 117103880 -33679673 - L2 LINE L2 -302 3011 2557 293 335 20 75 chr11 117103879 117104079 -33679474 + MIR SINE MIR 57 245 -17 * 1925 129 7 0 chr11 117104431 117104730 -33678823 + AluSx SINE Alu 3 303 0 406 258 45 0 chr11 117107153 117107242 -33676311 - L2 LINE L2 -8 3305 3213 2197 115 7 0 chr11 117108390 117108695 -33674858 - AluSc SINE Alu -2 307 1 184 379 71 43 chr11 117108990 117109130 -33674423 - L2 LINE L2 -3 3269 3126 25 0 0 0 chr11 117110581 117110606 -33672947 + AT_rich Low_complexity Low_complexity 1 25 0 870 298 83 22 chr11 117112351 117112761 -33670792 - LTR16A LTR ERVL 0 450 16 22 0 0 0 chr11 117113117 117113139 -33670414 + AT_rich Low_complexity Low_complexity 1 22 0 198 333 0 0 chr11 117113224 117113272 -33670281 - L2 LINE L2 -6 3266 3219 183 100 0 0 chr11 117114013 117114043 -33669510 + (CA)n Simple_repeat Simple_repeat 2 31 0 23 78 0 0 chr11 117114311 117114362 -33669191 + AT_rich Low_complexity Low_complexity 1 51 0 235 115 58 39 chr11 117114393 117114445 -33669108 + L2 LINE L2 3261 3313 0 350 278 0 10 chr11 117114463 117114560 -33668993 - MIR SINE MIR -104 158 63 332 311 93 25 chr11 117115286 117115447 -33668106 - L3 LINE CR1 -763 814 643 302 247 41 41 chr11 117115594 117115691 -33667862 + MIR SINE MIR 110 206 -56 234 0 0 0 chr11 117115966 117115992 -33667561 + (T)n Simple_repeat Simple_repeat 1 26 0 198 351 81 0 chr11 117116695 117116806 -33666747 - MIR SINE MIR -59 203 84 23 0 0 0 chr11 117117050 117117073 -33666480 + AT_rich Low_complexity Low_complexity 1 23 0 601 292 61 47 chr11 117117320 117117874 -33665679 + L1MEd LINE L1 608 1169 -4950 264 163 0 0 chr11 117118136 117118179 -33665374 - MLT1I LTR MaLR -256 153 111 442 302 25 0 chr11 117118204 117118363 -33665190 + L1MEd LINE L1 1369 1531 -4598 23 0 0 0 chr11 117118373 117118396 -33665157 + AT_rich Low_complexity Low_complexity 1 23 0 236 283 37 47 chr11 117118950 117119141 -33664412 + L1MEd LINE L1 2257 2445 -3684 452 283 147 36 chr11 117119167 117119363 -33664190 + L1MEd LINE L1 3171 3344 -2785 2017 120 11 0 chr11 117119363 117119647 -33663906 + AluSx SINE Alu 1 287 -25 452 283 147 36 chr11 117119647 117120136 -33663417 + L1MEd LINE L1 3344 3932 -2197 25 0 0 0 chr11 117120165 117120190 -33663363 + AT_rich Low_complexity Low_complexity 1 25 0 242 174 0 0 chr11 117120190 117120236 -33663317 - Alu SINE Alu 0 301 256 1967 159 138 5 chr11 117120567 117120945 -33662608 + MSTA LTR MaLR 1 428 0 335 171 61 37 chr11 117123834 117123916 -33659637 - L1MC4 LINE L1 -30 8012 7929 225 94 0 0 chr11 117124016 117124048 -33659505 + (CA)n Simple_repeat Simple_repeat 2 33 0 298 325 57 9 chr11 117124048 117124250 -33659303 - L1MC4 LINE L1 -139 7903 7689 408 277 130 28 chr11 117124288 117124465 -33659088 - L1MC4a LINE L1 -339 7469 7275 1616 234 141 131 chr11 117124648 117126284 -33657269 - L1MC4a LINE L1 -884 6924 5272 23 33 0 0 chr11 117126382 117126412 -33657141 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr11 117126423 117126454 -33657099 + AT_rich Low_complexity Low_complexity 1 31 0 387 316 120 11 chr11 117126706 117126972 -33656581 - L1MC4a LINE L1 -1089 5057 4763 514 288 54 17 chr11 117126997 117127245 -33656308 - L1MC4a LINE L1 -2177 3969 3715 1559 191 0 27 chr11 117127505 117127804 -33655749 - AluJo SINE Alu -10 302 12 2283 102 0 0 chr11 117127810 117128105 -33655448 - AluSq SINE Alu -15 298 4 389 270 181 26 chr11 117128126 117128352 -33655201 + MIR SINE MIR 2 262 0 269 340 37 52 chr11 117128676 117128867 -33654686 - L2 LINE L2 -497 2817 2630 * 418 331 52 23 chr11 117128864 117129036 -33654517 - MER5A DNA MER1_type -5 184 8 1408 225 113 9 chr11 117129165 117129494 -33654059 + MLT1A2 LTR MaLR 1 363 -11 284 330 136 64 chr11 117129822 117130733 -33652820 - L2 LINE L2 -974 2340 1364 415 264 271 7 chr11 117131328 117131483 -33652070 - MIR SINE MIR -22 240 45 2104 113 0 20 chr11 117132227 117132527 -33651026 - AluSx SINE Alu -18 294 1 2350 80 27 0 chr11 117132564 117132864 -33650689 - AluY SINE Alu -3 308 1 701 262 87 28 chr11 117133284 117133570 -33649983 + MLT1K LTR MaLR 284 586 -2 2730 0 3 0 chr11 117133934 117134227 -33649326 - AluYa5 SINE Alu -6 305 12 3863 202 33 24 chr11 117134405 117135176 -33648377 - L1MB7 LINE L1 -13 6407 5614 2062 111 7 0 chr11 117135176 117135485 -33648068 - AluSp SINE Alu 0 311 1 3863 202 33 24 chr11 117135485 117135810 -33647743 - L1MB7 LINE L1 -806 5614 5294 669 180 84 45 chr11 117135830 117136008 -33647545 - LTR34 LTR ERV1 -514 185 1 1115 214 17 13 chr11 117136068 117136302 -33647251 + LTR47B LTR ERVL 204 438 -5 2304 271 59 35 chr11 117136315 117137999 -33645554 - L1MB7 LINE L1 -3582 2800 967 486 220 76 17 chr11 117338430 117338548 -33445005 + MER39 LTR ERV1 9 133 -574 466 259 259 16 chr11 117338537 117338741 -33444812 + MER39 LTR ERV1 310 463 -244 * 2105 130 0 0 chr11 117338741 117339033 -33444520 + AluSx SINE Alu 1 292 -20 466 259 259 16 chr11 117339033 117339148 -33444405 + MER39 LTR ERV1 463 707 0 212 233 0 82 chr11 117339148 117339221 -33444332 + L2 LINE L2 3191 3257 -56 3632 122 90 2 chr11 117339372 117339971 -33443582 - MER39B LTR ERV1 0 653 2 820 200 45 30 chr11 117340158 117340358 -33443195 + MER3 DNA MER1_type 7 209 0 392 250 94 59 chr11 117341068 117341356 -33442197 + L1ME4a LINE L1 5529 5826 -295 21 95 0 0 chr11 117341476 117341539 -33442014 + AT_rich Low_complexity Low_complexity 1 63 0 196 100 50 0 chr11 117342114 117342154 -33441399 + GA-rich Low_complexity Low_complexity 1 42 0 388 336 0 35 chr11 117342742 117342885 -33440668 + L2 LINE L2 3134 3271 -1 414 276 221 0 chr11 117343018 117343181 -33440372 - MIR SINE MIR 0 262 64 2036 165 45 5 chr11 117344210 117344585 -33438968 + MLT1B LTR MaLR 1 390 0 491 265 63 74 chr11 117344790 117344979 -33438574 - MIR SINE MIR -20 242 56 2843 133 20 15 chr11 117345942 117346539 -33437014 + MER4E LTR ERV1 1 766 0 277 299 147 11 chr11 117346544 117346721 -33436832 - L2 LINE L2 0 3313 3113 22 0 0 0 chr11 117348315 117348337 -33435216 + AT_rich Low_complexity Low_complexity 1 22 0 396 300 115 38 chr11 117349109 117349456 -33434097 + L1ME4a LINE L1 5547 5920 -201 482 302 109 8 chr11 117349503 117349751 -33433802 - L2 LINE L2 -12 3301 3029 21 0 0 0 chr11 117351324 117351345 -33432208 + AT_rich Low_complexity Low_complexity 1 21 0 556 303 122 31 chr11 117352537 117352985 -33430568 + MLT1G1 LTR MaLR 13 593 -2 6876 174 36 37 chr11 117354383 117354595 -33428958 - L1MA10 LINE L1 -3 6331 6120 1914 106 4 0 chr11 117354595 117354850 -33428703 - AluSx SINE Alu -15 297 42 6876 174 36 37 chr11 117354850 117357208 -33426345 - L1MA10 LINE L1 -214 6120 3787 230 356 122 23 chr11 117357633 117357936 -33425617 + L2 LINE L2 2920 3252 -61 255 310 54 23 chr11 117358429 117358558 -33424995 + MIR SINE MIR 89 221 -41 405 325 95 54 chr11 117358733 117359413 -33424140 - L2 LINE L2 -54 3218 2517 1174 171 120 72 chr11 117359757 117360154 -33423399 - MSTD LTR MaLR 0 457 23 299 269 24 90 chr11 117360651 117360818 -33422735 + Charlie8 DNA MER1_type 4 159 -2258 777 101 29 0 chr11 117360869 117361007 -33422546 + (TATAG)n Simple_repeat Simple_repeat 1 142 0 269 280 70 0 chr11 117361152 117361252 -33422301 + Charlie8 DNA MER1_type 359 465 -1952 293 203 101 0 chr11 117361352 117361421 -33422132 + MER5B DNA MER1_type 103 178 0 394 379 52 19 chr11 117362793 117363004 -33420549 + MIR SINE MIR 28 245 -17 180 158 0 0 chr11 117363011 117363049 -33420504 + (CAT)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr11 117363634 117363664 -33419889 + AT_rich Low_complexity Low_complexity 1 30 0 2277 105 0 0 chr11 117363667 117363963 -33419590 - AluSc SINE Alu -13 296 1 483 285 65 5 chr11 117364091 117364305 -33419248 - L1ME4a LINE L1 -286 5835 5609 21 82 0 0 chr11 117364492 117364541 -33419012 + AT_rich Low_complexity Low_complexity 1 49 0 271 330 19 29 chr11 117364754 117364963 -33418590 - L1ME LINE L1 -280 6235 6029 1878 163 0 3 chr11 117365349 117365649 -33417904 - AluSx SINE Alu -13 299 1 1721 271 84 83 chr11 117365650 117366906 -33416647 + HAL1 LINE L1 200 1456 -1051 1177 262 69 13 chr11 117366969 117367431 -33416122 - L1ME LINE L1 -1603 4937 4450 537 66 0 0 chr11 117367443 117367519 -33416034 - L1PBa LINE L1 -6787 76 1 1030 247 35 61 chr11 117367581 117368042 -33415511 - L1ME LINE L1 -3558 2982 2534 1801 201 55 6 chr11 117368042 117368390 -33415163 - MLT1A1 LTR MaLR 0 365 1 4684 231 59 61 chr11 117368390 117370293 -33413260 - L1MDa LINE L1 -4002 2538 663 332 242 0 0 chr11 117370395 117370486 -33413067 - L1M4 LINE L1 -998 5646 5556 669 180 84 45 chr11 117370506 117370684 -33412869 - LTR34 LTR ERV1 -514 185 1 1115 214 17 13 chr11 117370744 117370978 -33412575 + LTR47B LTR ERVL 204 438 -5 2296 269 49 45 chr11 117370991 117373351 -33410202 - L1M4c LINE L1 -3582 3062 581 251 335 55 18 chr11 117373550 117373705 -33409848 - L1M4c LINE L1 -6301 241 74 285 29 0 0 chr11 117373705 117373739 -33409814 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 251 335 55 18 chr11 117373739 117373801 -33409752 - L1M4c LINE L1 -6468 74 16 230 280 0 0 chr11 117373995 117374045 -33409508 - MER20 DNA MER1_type -169 50 1 404 272 101 32 chr11 117374052 117374210 -33409343 - MIR SINE MIR -65 197 29 22 0 0 0 chr11 117374250 117374272 -33409281 + AT_rich Low_complexity Low_complexity 1 22 0 232 303 51 74 chr11 117374922 117375097 -33408456 + MIR SINE MIR 28 198 -64 2438 48 7 0 chr11 117376239 117376532 -33407021 + AluY SINE Alu 1 295 -16 1686 226 90 25 chr11 117377557 117377739 -33405814 - L1MDa LINE L1 -6063 477 308 183 80 0 0 chr11 117377739 117377764 -33405789 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1686 226 90 25 chr11 117377764 117378014 -33405539 - L1MDa LINE L1 -6232 308 17 1033 244 164 26 chr11 117378044 117378392 -33405161 + MSTD LTR MaLR 1 396 0 3105 229 66 14 chr11 117378395 117379927 -33403626 + L1ME1 LINE L1 4448 6064 -102 200 121 0 0 chr11 117380793 117380826 -33402727 - L2 LINE L2 -8 3264 3232 1113 118 0 0 chr11 117381200 117381378 -33402175 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 2041 150 0 0 chr11 117383189 117383489 -33400064 + AluSx SINE Alu 4 303 -9 1612 169 3 17 chr11 117383807 117384103 -33399450 - AluJo SINE Alu -12 300 9 257 200 20 90 chr11 117384484 117384584 -33398969 + HAL1 LINE L1 1587 1679 -828 1573 209 39 20 chr11 117385001 117385359 -33398194 + MLT1A1 LTR MaLR 1 365 0 2165 102 48 0 chr11 117385770 117386065 -33397488 + AluSg SINE Alu 1 309 -1 275 261 0 45 chr11 117386173 117386284 -33397269 - L1MEd LINE L1 -5005 1114 1009 26 30 0 0 chr11 117386284 117386317 -33397236 + AT_rich Low_complexity Low_complexity 1 33 0 2031 187 28 60 chr11 117386319 117386885 -33396668 - L1MA9 LINE L1 -40 6272 5725 1128 179 14 0 chr11 117386886 117387093 -33396460 - AluJo SINE Alu -2 310 101 3675 184 44 3 chr11 117387093 117387876 -33395677 - L1MA9 LINE L1 -578 5734 4874 273 29 0 0 chr11 117387876 117387910 -33395643 + (TG)n Simple_repeat Simple_repeat 1 34 0 3675 184 44 3 chr11 117387910 117388296 -33395257 - L1MA9 LINE L1 -1438 4874 4505 236 254 0 0 chr11 117388291 117388350 -33395203 - L1MEd LINE L1 -5091 1028 970 * 22 0 0 0 chr11 117390324 117390346 -33393207 + AT_rich Low_complexity Low_complexity 1 22 0 248 314 9 9 chr11 117390497 117390602 -33392951 + (TA)n Simple_repeat Simple_repeat 1 105 0 257 350 62 0 chr11 117390734 117390814 -33392739 - MIR SINE MIR -160 102 18 996 233 30 17 chr11 117390998 117391298 -33392255 - L1MA4 LINE L1 -9 6291 5988 207 246 31 0 chr11 117391303 117391368 -33392185 + T-rich Low_complexity Low_complexity 2 68 0 223 362 26 33 chr11 117391772 117391924 -33391629 - MIR SINE MIR -108 154 4 445 287 81 37 chr11 117392351 117392558 -33390995 - MIR SINE MIR -30 232 19 312 70 0 0 chr11 117392903 117392946 -33390607 + (ATATG)n Simple_repeat Simple_repeat 3 45 0 279 308 45 71 chr11 117393025 117393223 -33390330 + MLT1K LTR MaLR 396 588 0 480 339 143 37 chr11 117394457 117395003 -33388550 + L2 LINE L2 2253 2856 -458 333 155 0 0 chr11 117395290 117395348 -33388205 + (TA)n Simple_repeat Simple_repeat 1 58 0 472 374 93 15 chr11 117397190 117397522 -33386031 - L3 LINE CR1 -253 1324 967 2679 263 89 19 chr11 117397747 117398592 -33384961 + L1ME2 LINE L1 14 944 -5452 2219 104 3 0 chr11 117398592 117398889 -33384664 - AluSc SINE Alu -11 298 1 2679 263 89 19 chr11 117398889 117399067 -33384486 + L1ME2 LINE L1 944 1108 -5288 355 119 0 13 chr11 117399161 117399231 -33384322 + L1MA8 LINE L1 4714 4779 -1367 4120 163 54 15 chr11 117399635 117400620 -33382933 + L1MA8 LINE L1 5072 6090 -201 1385 267 80 16 chr11 117400632 117401311 -33382242 + L1ME2 LINE L1 2904 3625 -2590 435 313 8 30 chr11 117401415 117401546 -33382007 - L2 LINE L2 -2 3311 3184 4117 241 102 39 chr11 117401774 117402646 -33380907 + L1ME2 LINE L1 3617 4433 -1800 1247 184 141 12 chr11 117402646 117402966 -33380587 + MER46B DNA MER2_type 1 236 0 4117 241 102 39 chr11 117402966 117403270 -33380283 + L1ME2 LINE L1 4433 4716 -1517 1098 231 41 51 chr11 117403270 117403664 -33379889 + MLT1B LTR MaLR 1 390 0 4117 241 102 39 chr11 117403664 117404728 -33378825 + L1ME2 LINE L1 4716 5994 -239 633 213 6 12 chr11 117404894 117405054 -33378499 + L1MA10 LINE L1 6174 6332 -2 550 292 40 45 chr11 117405537 117405739 -33377814 - LTR33 LTR ERVL -320 201 1 222 351 40 46 chr11 117405825 117405976 -33377577 - L3 LINE CR1 -1108 469 320 181 316 71 31 chr11 117406047 117406145 -33377408 - L3 LINE CR1 -1409 168 67 220 296 102 20 chr11 117406191 117406289 -33377264 + MIR3 SINE MIR 96 201 -7 285 299 31 21 chr11 117407822 117407919 -33375634 + MIR SINE MIR 46 143 -119 27 0 0 0 chr11 117408113 117408140 -33375413 + AT_rich Low_complexity Low_complexity 1 27 0 218 316 158 26 chr11 117408427 117408541 -33375012 + MER5A DNA MER1_type 51 179 -10 320 279 102 60 chr11 117408932 117409301 -33374252 - MLT1H LTR MaLR -2 547 1 21 36 0 0 chr11 117409495 117409523 -33374030 + AT_rich Low_complexity Low_complexity 1 28 0 229 224 20 0 chr11 117409535 117409584 -33373969 - L2 LINE L2 0 3272 3223 389 315 28 47 chr11 117409803 117410016 -33373537 + MIR SINE MIR 4 212 -50 263 314 71 53 chr11 117410564 117410847 -33372706 + L2 LINE L2 649 936 -2378 4828 185 53 19 chr11 117410874 117411915 -33371638 - L1MC3 LINE L1 0 7785 6710 305 313 98 47 chr11 117411966 117412222 -33371331 + L2 LINE L2 1271 1539 -1775 404 306 97 72 chr11 117412223 117412802 -33370751 - HAL1 LINE L1 -1898 609 17 195 227 80 40 chr11 117413167 117413242 -33370311 - MIR SINE MIR -61 201 124 208 135 0 27 chr11 117413345 117413382 -33370171 + (TC)n Simple_repeat Simple_repeat 2 37 0 210 135 0 0 chr11 117413627 117413659 -33369894 + (TAA)n Simple_repeat Simple_repeat 1 33 0 528 103 13 0 chr11 117413659 117413737 -33369816 + MADE1 DNA Mariner 1 79 -1 211 132 26 0 chr11 117413807 117413845 -33369708 + (TAGA)n Simple_repeat Simple_repeat 3 41 0 502 238 110 78 chr11 117413879 117414253 -33369300 - MLT1C LTR MaLR 0 390 5 805 237 28 124 chr11 117414440 117414926 -33368627 + LTR27 LTR ERV1 1 1239 -128 23 0 0 0 chr11 117415020 117415043 -33368510 + AT_rich Low_complexity Low_complexity 1 23 0 243 246 0 72 chr11 117415412 117415481 -33368072 + MARNA DNA Mariner 125 188 -398 263 217 198 47 chr11 117417267 117417373 -33366180 - FLAM_C SINE Alu -4 129 8 180 0 0 0 chr11 117417477 117417497 -33366056 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2077 77 4 4 chr11 117417501 117417775 -33365778 - AluY SINE Alu -37 274 1 960 239 23 107 chr11 117418361 117418876 -33364677 + L1MC5 LINE L1 6748 7219 -742 238 160 47 47 chr11 117418905 117419011 -33364542 + (TTAA)n Simple_repeat Simple_repeat 1 106 0 381 204 51 31 chr11 117419014 117419112 -33364441 + MER94 DNA DNA 34 133 -1 335 250 0 0 chr11 117419319 117419395 -33364158 + L1MC5 LINE L1 7324 7399 -562 215 363 53 9 chr11 117419805 117419918 -33363635 - L2 LINE L2 -223 3049 2932 237 377 13 0 chr11 117421463 117421540 -33362013 - L3 LINE CR1 -70 1507 1430 441 97 27 0 chr11 117421629 117421712 -33361841 - L1P LINE L1 -740 5391 5299 5504 85 4 12 chr11 117421713 117422487 -33361066 + L1PA8 LINE L1 5399 6166 -6 252 0 0 0 chr11 117422822 117422850 -33360703 + (TA)n Simple_repeat Simple_repeat 2 29 0 2120 245 74 98 chr11 117423247 117424551 -33359002 - HAL1 LINE L1 -109 2398 1126 419 312 111 58 chr11 117425351 117425733 -33357820 + L2 LINE L2 2465 2826 -446 856 233 11 0 chr11 117425733 117425909 -33357644 - MER45A DNA AcHobo 0 178 1 419 312 111 58 chr11 117425909 117426281 -33357272 + L2 LINE L2 2826 3260 -12 6584 28 1 8 chr11 117427402 117428189 -33355364 - L1PA3 LINE L1 0 6155 5374 487 322 154 25 chr11 117428444 117429034 -33354519 + L2 LINE L2 2078 2743 -571 539 259 25 25 chr11 117429035 117429193 -33354360 + L1ME1 LINE L1 34 191 -6205 631 276 72 89 chr11 117429229 117429577 -33353976 + L1ME1 LINE L1 348 689 -5707 * 6951 233 86 41 chr11 117429574 117429616 -33353937 + L1ME1 LINE L1 1616 1655 -4580 2234 105 0 3 chr11 117429616 117429922 -33353631 + AluSx SINE Alu 3 307 -5 6951 233 86 41 chr11 117429922 117430578 -33352975 + L1ME1 LINE L1 1655 2280 -3955 1522 181 0 62 chr11 117430578 117430899 -33352654 + AluJo SINE Alu 1 301 -11 6951 233 86 41 chr11 117430899 117432273 -33351280 + L1ME1 LINE L1 2280 3591 -2644 195 42 0 0 chr11 117432273 117432297 -33351256 + (TA)n Simple_repeat Simple_repeat 2 25 0 6951 233 86 41 chr11 117432297 117434051 -33349502 + L1ME1 LINE L1 3591 5617 -618 1750 149 51 118 chr11 117434065 117434516 -33349037 + MSTB1 LTR MaLR 4 424 -8 1176 258 27 45 chr11 117434530 117434689 -33348864 + L1ME1 LINE L1 5706 5866 -369 1127 192 39 13 chr11 117434689 117434918 -33348635 + MER46A DNA MER2_type 1 235 -1 1176 258 27 45 chr11 117434918 117435204 -33348349 + L1ME1 LINE L1 5866 6143 -92 313 215 12 153 chr11 117435150 117435313 -33348240 + L1MA10 LINE L1 6249 6388 -15 * 335 400 49 26 chr11 117435383 117435648 -33347905 + L2 LINE L2 2983 3253 -19 180 347 0 81 chr11 117436317 117436379 -33347174 - L2 LINE L2 -11 3261 3212 1115 199 9 18 chr11 117436379 117436600 -33346953 + MER20 DNA MER1_type 1 219 0 180 347 0 81 chr11 117436600 117436661 -33346892 - L2 LINE L2 -60 3212 3148 1642 243 48 37 chr11 117436945 117437492 -33346061 - L1ME1 LINE L1 -5 6230 5678 279 239 14 0 chr11 117437493 117437564 -33345989 + MER52A LTR ERV1 1 72 -1683 5581 207 84 70 chr11 117437770 117439450 -33344103 + MER52A LTR ERV1 52 1755 0 1417 255 60 8 chr11 117439451 117440344 -33343209 - L1ME1 LINE L1 -556 5679 4720 1984 133 7 3 chr11 117440408 117440710 -33342843 - AluSx SINE Alu -9 303 1 1779 196 6 25 chr11 117440743 117441100 -33342453 - L1M1 LINE L1 -7194 371 22 998 285 70 32 chr11 117441103 117441311 -33342242 - L1ME1 LINE L1 -4772 1624 1426 4991 90 6 35 chr11 117441311 117442020 -33341533 + LTR12 LTR ERV1 1 688 0 998 285 70 32 chr11 117442020 117442506 -33341047 - L1ME1 LINE L1 -4970 1426 903 * 1280 283 35 24 chr11 117442481 117442941 -33340612 - L1ME1 LINE L1 -5892 504 40 1061 305 98 62 chr11 117443388 117444143 -33339410 + L2 LINE L2 1420 2201 -1113 501 316 98 25 chr11 117444932 117445248 -33338305 - L2 LINE L2 -111 3202 2864 1628 175 19 0 chr11 117445255 117445524 -33338029 + MER1B DNA MER1_type 1 274 -65 3870 287 188 15 chr11 117445570 117447383 -33336170 - L2 LINE L2 -460 2854 729 814 217 62 131 chr11 117447455 117447586 -33335967 + MSTD LTR MaLR 6 145 -251 2445 135 54 12 chr11 117447586 117447993 -33335560 + MSTB LTR MaLR 1 424 -2 814 217 62 131 chr11 117447993 117448234 -33335319 + MSTD LTR MaLR 145 352 -44 877 287 253 11 chr11 117448235 117448702 -33334851 + L2 LINE L2 117 696 -2618 1057 139 114 25 chr11 117448889 117449090 -33334463 + MER20 DNA MER1_type 1 219 0 353 245 64 0 chr11 117449606 117449700 -33333853 - L2 LINE L2 0 3313 3214 39 68 0 0 chr11 117449741 117449815 -33333738 + AT_rich Low_complexity Low_complexity 1 74 0 512 285 105 15 chr11 117449937 117450137 -33333416 - MIR SINE MIR -10 252 35 673 347 50 58 chr11 117451450 117451952 -33331601 - L2 LINE L2 -11 3302 2805 253 291 0 31 chr11 117452374 117452501 -33331052 + L1MCa LINE L1 1411 1533 -4893 21 0 0 0 chr11 117452508 117452529 -33331024 + AT_rich Low_complexity Low_complexity 1 21 0 190 228 105 0 chr11 117452529 117452586 -33330967 - MIR SINE MIR -80 182 120 665 323 7 30 chr11 117452774 117453043 -33330510 + L1MCa LINE L1 1751 2014 -4593 2447 103 22 8 chr11 117453043 117453402 -33330151 - THE1B LTR MaLR 0 364 1 665 323 7 30 chr11 117453402 117453429 -33330124 + L1MCa LINE L1 2014 2040 -4567 1035 279 44 61 chr11 117453458 117454120 -33329433 + L2 LINE L2 2558 3210 -103 345 256 44 0 chr11 117454191 117454281 -33329272 - L1ME LINE L1 -613 5549 5456 1614 266 80 11 chr11 117454711 117455252 -33328301 - L1ME3A LINE L1 -11 6954 6377 1621 288 135 37 chr11 117455522 117458568 -33324985 - L1MCc LINE L1 -1639 5302 2022 461 246 83 43 chr11 117458571 117458964 -33324589 - L1MCc LINE L1 -4942 1481 1228 634 154 48 1 chr11 117460290 117460431 -33323122 - L1MA8 LINE L1 -1 6290 6136 198 0 0 0 chr11 117460433 117460455 -33323098 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1957 146 3 3 chr11 117460455 117460778 -33322775 - L1PB1 LINE L1 -9 6142 5820 8594 161 39 3 chr11 117460918 117463176 -33320377 - L1PBa LINE L1 -3288 3574 1094 1957 196 10 5 chr11 117463181 117463573 -33319980 - L1PBa LINE L1 -5818 1045 652 662 198 8 0 chr11 117463738 117463859 -33319694 - MLT1B LTR MaLR -76 314 193 2120 117 0 7 chr11 117463860 117464158 -33319395 - AluSx SINE Alu -16 296 1 1501 187 18 86 chr11 117464794 117465179 -33318374 - MLT1A1 LTR MaLR -6 359 1 240 348 19 58 chr11 117465249 117465404 -33318149 - L2 LINE L2 -188 3084 2936 348 360 35 9 chr11 117465631 117465745 -33317808 + MER91C DNA MER1_type 2 118 -22 2023 200 97 52 chr11 117465800 117466409 -33317144 - MER92B LTR ERV1 0 636 1 1854 172 20 6 chr11 117466730 117467085 -33316468 - MER57A LTR ERV1 -2 401 42 197 225 0 0 chr11 117467091 117467131 -33316422 + MIR SINE MIR 213 252 -10 24 0 0 0 chr11 117467872 117467896 -33315657 + AT_rich Low_complexity Low_complexity 1 24 0 487 242 166 25 chr11 117468175 117468332 -33315221 + MER5A DNA MER1_type 11 189 0 276 335 110 19 chr11 117468332 117468486 -33315067 + MER5B DNA MER1_type 7 174 -4 26 0 0 0 chr11 117469004 117469030 -33314523 + AT_rich Low_complexity Low_complexity 1 26 0 4087 118 28 32 chr11 117469030 117469770 -33313783 - L1MA2 LINE L1 -9 6295 5559 818 226 204 97 chr11 117469770 117470032 -33313521 + LTR28 LTR ERV1 2 235 -1208 2206 109 3 3 chr11 117470032 117470336 -33313217 - AluSq SINE Alu -9 304 1 818 226 204 97 chr11 117470336 117470603 -33312950 + LTR28 LTR ERV1 235 1305 -138 3590 159 11 4 chr11 117470640 117471554 -33311999 - L1M1 LINE L1 -740 5565 4642 2214 97 0 7 chr11 117471691 117471991 -33311562 + AluY SINE Alu 1 298 -13 25 0 0 0 chr11 117472348 117472373 -33311180 + AT_rich Low_complexity Low_complexity 1 25 0 476 256 102 7 chr11 117472426 117472563 -33310990 - MER63A DNA MER1_type -17 193 44 1200 255 85 58 chr11 117472790 117473781 -33309772 - L1ME3 LINE L1 -195 5967 4876 414 39 0 0 chr11 117473781 117473833 -33309720 + (CA)n Simple_repeat Simple_repeat 1 52 0 1200 255 85 58 chr11 117473833 117474265 -33309288 - L1ME3 LINE L1 -1286 4876 4457 613 303 39 27 chr11 117474260 117474593 -33308960 - L1ME3 LINE L1 -2367 3779 3443 * 1305 268 55 19 chr11 117474695 117475333 -33308220 - L1ME3 LINE L1 -2979 3167 2507 1943 156 0 0 chr11 117476915 117477210 -33306343 - AluSx SINE Alu -17 295 1 523 313 60 12 chr11 117477659 117477908 -33305645 + L2 LINE L2 2469 2729 -585 1703 137 50 0 chr11 117477925 117478187 -33305366 + AluSx SINE Alu 19 293 -19 180 0 0 0 chr11 117478194 117478214 -33305339 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 238 311 16 0 chr11 117478281 117478342 -33305211 + L2 LINE L2 3157 3218 -54 205 182 0 0 chr11 117478878 117478911 -33304642 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 22 35 0 0 chr11 117479976 117480005 -33303548 + AT_rich Low_complexity Low_complexity 1 29 0 1993 180 173 70 chr11 117480720 117481432 -33302121 - LTR48 LTR ERV1 0 787 3 2044 129 39 36 chr11 117481663 117482026 -33301527 + THE1B LTR MaLR 1 364 0 346 238 143 0 chr11 117482211 117482295 -33301258 - L2 LINE L2 -23 3249 3154 201 39 0 0 chr11 117482308 117482334 -33301219 + (TC)n Simple_repeat Simple_repeat 2 27 0 226 155 43 43 chr11 117482334 117482450 -33301103 + (TA)n Simple_repeat Simple_repeat 2 117 0 230 283 31 88 chr11 117482846 117482982 -33300571 - L1MC4 LINE L1 -1 8041 7922 2557 132 80 0 chr11 117482982 117483405 -33300148 - MSTB2 LTR MaLR 0 457 1 230 283 31 88 chr11 117483405 117483494 -33300059 - L1MC4 LINE L1 -120 7922 7829 397 208 131 0 chr11 117483565 117483695 -33299858 - L1M4 LINE L1 -1609 4537 4391 4970 229 32 37 chr11 117483699 117484428 -33299125 + L1ME3A LINE L1 4020 4751 -1423 3553 138 68 10 chr11 117484428 117485045 -33298508 - MER39B LTR ERV1 0 653 1 4970 229 32 37 chr11 117485045 117485829 -33297724 + L1ME3A LINE L1 4751 5522 -652 532 229 220 81 chr11 117485868 117486104 -33297449 - MER57B LTR ERV1 -131 271 3 306 221 28 212 chr11 117487040 117487257 -33296296 + MER5B DNA MER1_type 1 177 -1 631 211 0 16 chr11 117487262 117487390 -33296163 + MER5B DNA MER1_type 53 178 0 797 185 82 0 chr11 117487392 117487538 -33296015 - MER5A DNA MER1_type -14 175 18 831 259 45 85 chr11 117487547 117487833 -33295720 + L1ME3A LINE L1 5562 5827 -343 2169 124 0 0 chr11 117487833 117488139 -33295414 - AluSx SINE Alu -6 306 1 831 259 45 85 chr11 117488139 117488276 -33295277 + L1ME3A LINE L1 5827 5968 -202 300 287 52 9 chr11 117488741 117488856 -33294697 - MER94 DNA DNA -3 131 12 216 0 0 0 chr11 117489951 117489975 -33293578 + (T)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr11 117489996 117490020 -33293533 + GC_rich Low_complexity Low_complexity 1 24 0 1921 112 81 7 chr11 117490159 117490444 -33293109 - AluSx SINE Alu -6 306 1 22 35 0 0 chr11 117490990 117491019 -33292534 + AT_rich Low_complexity Low_complexity 1 29 0 345 24 0 0 chr11 117491197 117491239 -33292314 + (CA)n Simple_repeat Simple_repeat 1 42 0 27 49 0 0 chr11 117491371 117491412 -33292141 + AT_rich Low_complexity Low_complexity 1 41 0 1305 214 52 67 chr11 117492113 117492515 -33291038 + MSTD LTR MaLR 1 396 0 449 250 10 0 chr11 117492657 117492753 -33290800 - L2 LINE L2 -4 3309 3213 716 330 198 14 chr11 117493082 117493424 -33290129 - L2 LINE L2 -534 2780 2502 1294 234 24 40 chr11 117493424 117493804 -33289749 + MLT1A2 LTR MaLR 1 374 0 716 330 198 14 chr11 117493804 117494299 -33289254 - L2 LINE L2 -812 2502 1769 198 103 0 0 chr11 117494299 117494328 -33289225 + (TG)n Simple_repeat Simple_repeat 1 29 0 716 330 198 14 chr11 117494328 117494373 -33289180 - L2 LINE L2 -1545 1769 1734 338 302 67 22 chr11 117494906 117495085 -33288468 + MIR SINE MIR 5 191 -71 432 121 0 0 chr11 117495513 117495579 -33287974 - Charlie5 DNA MER1_type 0 2623 2558 2354 228 48 41 chr11 117495635 117496360 -33287193 - L1MB7 LINE L1 -12 6172 5443 420 170 30 0 chr11 117496360 117496460 -33287093 - Charlie5 DNA MER1_type -84 2528 2426 324 0 0 0 chr11 117496965 117497001 -33286552 + (GA)n Simple_repeat Simple_repeat 2 37 0 942 234 22 108 chr11 117497620 117498026 -33285527 + MLT1A2 LTR MaLR 1 371 -3 203 367 41 10 chr11 117498438 117498536 -33285017 - L2 LINE L2 -3 3269 3169 314 269 110 57 chr11 117498536 117498781 -33284772 + L1ME4a LINE L1 5770 6027 -94 212 345 29 58 chr11 117498911 117499085 -33284468 - L2 LINE L2 -178 3135 2967 2453 92 0 9 chr11 117499351 117499666 -33283887 + AluSx SINE Alu 1 312 0 231 114 0 0 chr11 117499845 117499880 -33283673 + (A)n Simple_repeat Simple_repeat 1 35 0 186 333 17 17 chr11 117500519 117500579 -33282974 + MIR SINE MIR 16 75 -187 32 43 0 0 chr11 117500748 117500794 -33282759 + AT_rich Low_complexity Low_complexity 1 46 0 28 0 0 0 chr11 117500909 117500937 -33282616 + AT_rich Low_complexity Low_complexity 1 28 0 218 333 61 0 chr11 117501081 117501147 -33282406 + MIR SINE MIR 30 99 -163 217 241 133 96 chr11 117501173 117501339 -33282214 - MIR SINE MIR -44 218 47 218 278 19 0 chr11 117502701 117502755 -33280798 + CT-rich Low_complexity Low_complexity 4 58 0 261 177 38 13 chr11 117502863 117502942 -33280611 + CT-rich Low_complexity Low_complexity 3 83 0 1769 166 96 20 chr11 117504064 117504462 -33279091 - MSTA LTR MaLR 0 428 1 1849 278 68 13 chr11 117505029 117505709 -33277844 - HsTC2c DNA Tc2 -7 722 6 776 246 59 5 chr11 117506108 117506253 -33277300 - MER58C DNA MER1_type -2206 214 53 2287 104 48 20 chr11 117506253 117506607 -33276946 + THE1B LTR MaLR 1 364 0 776 246 59 5 chr11 117506607 117506664 -33276889 - MER58C DNA MER1_type -2367 53 1 847 218 50 0 chr11 117506673 117506852 -33276701 - MER5A DNA MER1_type -1 188 1 497 317 62 25 chr11 117506855 117507095 -33276458 + MIR SINE MIR 12 260 -2 181 311 107 57 chr11 117507937 117508059 -33275494 + MIR SINE MIR 11 138 -124 * 274 252 154 16 chr11 117508046 117508169 -33275384 + L2 LINE L2 2615 2754 -560 234 263 297 17 chr11 117508237 117508355 -33275198 + MER5A DNA MER1_type 39 189 0 229 268 248 26 chr11 117508355 117508503 -33275050 + L2 LINE L2 2793 2974 -340 517 296 11 34 chr11 117508569 117508748 -33274805 + L2 LINE L2 3135 3309 -4 335 303 65 26 chr11 117509476 117509631 -33273922 + MIR SINE MIR 12 172 -90 2143 104 0 0 chr11 117509823 117510110 -33273443 - AluSg SINE Alu -23 287 1 21 0 0 0 chr11 117510749 117510770 -33272783 + AT_rich Low_complexity Low_complexity 1 21 0 269 242 175 50 chr11 117510986 117511106 -33272447 - MIR3 SINE MIR -51 157 23 1817 209 129 9 chr11 117511317 117511766 -33271787 - MLT1D LTR MaLR -2 503 1 734 243 30 0 chr11 117512407 117512576 -33270977 + MER5A DNA MER1_type 1 189 0 2811 216 74 21 chr11 117513319 117513808 -33269745 - L1ME2 LINE L1 -10 6154 5592 2770 60 139 12 chr11 117513808 117514239 -33269314 - LTR19A LTR ERV1 0 486 1 2811 216 74 21 chr11 117514239 117514622 -33268931 - L1ME2 LINE L1 -572 5592 5231 334 273 107 27 chr11 117515087 117515237 -33268316 - MIR3 SINE MIR -37 171 10 303 336 60 0 chr11 117516365 117516481 -33267072 - L2 LINE L2 -4 3309 3187 * 554 245 135 31 chr11 117516480 117516672 -33266881 - MIR SINE MIR -1 261 50 * 1222 255 133 34 chr11 117516669 117517135 -33266418 + L2 LINE L2 2149 2660 -654 979 324 69 30 chr11 117517188 117517620 -33265933 + L2 LINE L2 2854 3302 -11 520 354 48 13 chr11 117517657 117517968 -33265585 - L2 LINE L2 -340 2974 2653 900 249 63 44 chr11 117517980 117518345 -33265208 + L1ME3A LINE L1 5537 5908 -262 704 267 89 56 chr11 117518345 117518835 -33264718 + MLT1H LTR MaLR 1 595 0 294 239 0 0 chr11 117518882 117518949 -33264604 + MLT1H-int LTR MaLR 26 92 -1643 279 359 0 7 chr11 117518991 117519133 -33264420 + MLT1H-int LTR MaLR 332 472 -899 260 161 97 32 chr11 117520183 117520245 -33263308 + MLT1F LTR MaLR 3 68 -474 425 297 61 46 chr11 117520245 117520572 -33262981 - HAL1 LINE L1 -1434 1073 742 612 338 53 53 chr11 117520576 117520969 -33262584 + L2 LINE L2 2919 3311 -2 460 278 29 17 chr11 117521232 117521387 -33262166 + MIR SINE MIR 4 156 -62 705 240 50 28 chr11 117521634 117521813 -33261740 + MER58A DNA MER1_type 42 224 0 1089 197 24 5 chr11 117522019 117522227 -33261326 + MER20 DNA MER1_type 1 212 -7 3066 74 15 7 chr11 117523176 117523582 -33259971 + MLT2A2 LTR ERVL 1 409 -44 216 158 0 0 chr11 117523597 117523635 -33259918 + (TG)n Simple_repeat Simple_repeat 2 39 0 597 180 35 0 chr11 117523773 117523945 -33259608 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 351 91 36 0 chr11 117523955 117524010 -33259543 + MLT2A2 LTR ERVL 464 520 0 254 150 100 0 chr11 117524096 117524156 -33259397 - MLT2B1 LTR ERVL 0 520 455 1671 209 8 74 chr11 117524169 117524667 -33258886 + MER57A-int LTR ERV1 365 829 -6708 268 146 0 0 chr11 117524869 117524910 -33258643 + MER57A-int LTR ERV1 948 988 -4135 795 251 68 30 chr11 117524910 117525173 -33258380 + MER34C LTR ERV1 155 427 -158 419 193 23 72 chr11 117525176 117525413 -33258140 + MER57A-int LTR ERV1 1095 2689 -3678 * 754 178 16 91 chr11 117525393 117525619 -33257934 + MER57A-int LTR ERV1 1357 3271 -3060 393 181 0 0 chr11 117525672 117525744 -33257809 + MER57A-int LTR ERV1 3264 3335 -2996 259 203 43 0 chr11 117526008 117526077 -33257476 + MER57A-int LTR ERV1 2808 2879 -3879 5055 200 56 66 chr11 117526301 117527906 -33255647 + MER57A-int LTR ERV1 3698 5821 -1587 6194 200 44 10 chr11 117528236 117529513 -33254040 + MER57A-int LTR ERV1 5825 7144 -393 534 138 106 32 chr11 117529513 117529636 -33253917 + LTR54B LTR ERV1 1 132 -366 458 189 112 7 chr11 117529688 117529831 -33253722 + LTR54B LTR ERV1 226 383 -115 477 130 10 70 chr11 117529877 117529977 -33253576 + MER57A-int LTR ERV1 7444 7537 0 1918 158 103 5 chr11 117529977 117530344 -33253209 + MER57A LTR ERV1 1 403 0 371 295 177 25 chr11 117530462 117530699 -33252854 + L1 LINE L1 3549 3821 -2325 722 228 30 8 chr11 117530908 117531136 -33252417 + L1 LINE L1 3386 3614 -2532 263 265 24 0 chr11 117531137 117531220 -33252333 + L1 LINE L1 4855 4939 -1207 547 202 161 22 chr11 117531226 117531449 -33252104 + L1M4 LINE L1 1212 1465 -5077 1170 158 11 42 chr11 117533343 117533392 -33250161 - L1MA6 LINE L1 0 6300 6251 2034 138 41 36 chr11 117533392 117533754 -33249799 - THE1B LTR MaLR 0 364 1 11114 91 33 5 chr11 117533754 117535290 -33248263 - THE1B-int LTR MaLR 0 1580 1 1946 162 36 22 chr11 117535290 117535649 -33247904 - THE1B LTR MaLR 0 364 1 1170 158 11 42 chr11 117535649 117535857 -33247696 - L1MA6 LINE L1 -46 6254 6049 4232 241 75 9 chr11 117535875 117537387 -33246166 - L1M1 LINE L1 -4150 3059 1734 1574 325 27 40 chr11 117537631 117538155 -33245398 - L1M1 LINE L1 -6479 730 216 2004 119 61 25 chr11 117538155 117538515 -33245038 + THE1C LTR MaLR 3 375 0 1574 325 27 40 chr11 117538515 117538686 -33244867 - L1M1 LINE L1 -6993 216 44 520 221 40 12 chr11 117538671 117538863 -33244690 - L1ME LINE L1 -644 5518 5315 * 1039 274 73 38 chr11 117538911 117539567 -33243986 - L1ME3A LINE L1 -219 6020 5335 14805 147 39 21 chr11 117539567 117542214 -33241339 - Tigger4(Zombi) DNA MER2_type -7 2724 32 486 319 92 9 chr11 117542228 117542545 -33241008 - L1ME3A LINE L1 -874 5341 4999 251 254 0 0 chr11 117542589 117542652 -33240901 + L1M4 LINE L1 2877 2939 -3207 429 276 96 20 chr11 117542722 117542921 -33240632 - L1ME3A LINE L1 -3444 2771 2558 240 86 0 0 chr11 117542953 117542988 -33240565 + (CCTA)n Simple_repeat Simple_repeat 4 38 0 306 250 0 0 chr11 117542988 117543048 -33240505 - MER2 DNA MER2_type -1 344 285 356 270 99 20 chr11 117543300 117543552 -33240001 - L1ME3A LINE L1 -3699 2516 2245 391 288 70 39 chr11 117543601 117543830 -33239723 - L1ME3A LINE L1 -4137 2259 2024 381 299 43 30 chr11 117544093 117544324 -33239229 - L1ME3A LINE L1 -4640 1756 1523 960 305 62 48 chr11 117544471 117545316 -33238237 - L1ME3A LINE L1 -4918 1287 432 315 104 0 0 chr11 117545505 117545553 -33238000 + (CA)n Simple_repeat Simple_repeat 2 49 0 1429 210 99 3 chr11 117545599 117545923 -33237630 + MLT1A1 LTR MaLR 10 364 -1 381 306 177 38 chr11 117546474 117546758 -33236795 - L1MDa LINE L1 -753 1737 1312 356 331 29 0 chr11 117546848 117546984 -33236569 - L1MDa LINE L1 -5393 726 587 247 248 29 102 chr11 117547042 117547179 -33236374 - L1MDa LINE L1 -5634 485 359 262 271 75 60 chr11 117547659 117547792 -33235761 + L2 LINE L2 3179 3313 0 408 222 0 49 chr11 117548332 117548476 -33235077 + (TGGG)n Simple_repeat Simple_repeat 2 138 0 5137 161 66 12 chr11 117550739 117552088 -33231465 - L1MA5 LINE L1 0 6300 4887 4184 158 57 21 chr11 117552926 117553652 -33229901 + L1PB4 LINE L1 4804 5502 -654 1824 151 102 6 chr11 117553652 117553984 -33229569 + THE1B LTR MaLR 1 364 0 4184 158 57 21 chr11 117553984 117554211 -33229342 + L1PB4 LINE L1 5502 5719 -437 540 111 0 0 chr11 117554211 117554292 -33229261 + (TA)n Simple_repeat Simple_repeat 2 82 0 4184 158 57 21 chr11 117554292 117554582 -33228971 + L1PB4 LINE L1 5719 6086 -70 1638 106 0 0 chr11 117554582 117554799 -33228754 + AluSx SINE Alu 1 217 -95 409 136 0 0 chr11 117554888 117554947 -33228606 + AluSp/q SINE Alu 228 286 -27 231 102 51 17 chr11 117554950 117554976 -33228577 + (TAAA)n Simple_repeat Simple_repeat 1 25 -36 418 128 13 0 chr11 117554976 117555054 -33228499 + L1PB4 LINE L1 6076 6154 -2 231 102 51 17 chr11 117555054 117555086 -33228467 + (TAAA)n Simple_repeat Simple_repeat 25 61 0 219 321 62 36 chr11 117555294 117555406 -33228147 - L3 LINE CR1 -465 1112 998 587 247 53 29 chr11 117555859 117555905 -33227648 + MLT1J1 LTR MaLR 1 44 -402 1589 187 86 36 chr11 117555905 117556349 -33227204 + MER31B LTR ERV1 1 466 0 587 247 53 29 chr11 117556349 117556472 -33227081 + MLT1J1 LTR MaLR 44 174 -272 243 0 0 0 chr11 117556474 117556501 -33227052 + (T)n Simple_repeat Simple_repeat 1 27 0 189 0 0 0 chr11 117556527 117556548 -33227005 + (G)n Simple_repeat Simple_repeat 1 21 0 2444 72 0 0 chr11 117556653 117556958 -33226595 - AluY SINE Alu -4 307 3 228 327 77 10 chr11 117556981 117557085 -33226468 + MLT1J1 LTR MaLR 271 381 -65 22 35 0 0 chr11 117559428 117559457 -33224096 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr11 117559871 117559894 -33223659 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr11 117560669 117560693 -33222860 + AT_rich Low_complexity Low_complexity 1 24 0 268 147 0 29 chr11 117562394 117562462 -33221091 + (GGAA)n Simple_repeat Simple_repeat 4 69 0 533 327 19 0 chr11 117567572 117567731 -33215822 + MER5B DNA MER1_type 1 162 -16 237 217 0 0 chr11 117568048 117568094 -33215459 + GA-rich Low_complexity Low_complexity 3 48 0 5118 166 16 54 chr11 117574732 117574981 -33208572 + L1PA13 LINE L1 5232 5489 -677 1699 114 9 44 chr11 117574981 117575296 -33208257 + AluSg SINE Alu 1 304 -6 5118 166 16 54 chr11 117575296 117576013 -33207540 + L1PA13 LINE L1 5489 6159 -7 1166 274 143 43 chr11 117578479 117578683 -33204870 - HAL1 LINE L1 -821 1686 1504 222 37 0 0 chr11 117578683 117578710 -33204843 + (CAT)n Simple_repeat Simple_repeat 2 28 0 1166 274 143 43 chr11 117578710 117579550 -33204003 - HAL1 LINE L1 -1003 1504 538 356 273 91 9 chr11 117579625 117579735 -33203818 + MLT1J LTR MaLR 14 132 -379 246 264 18 82 chr11 117579698 117579808 -33203745 + MLT2E LTR ERVL 33 135 -493 * 24 0 0 0 chr11 117581782 117581806 -33201747 + AT_rich Low_complexity Low_complexity 1 24 0 267 330 25 17 chr11 117582222 117582340 -33201213 + MIR3 SINE MIR 73 191 -17 28 29 0 0 chr11 117582728 117582763 -33200790 + AT_rich Low_complexity Low_complexity 1 35 0 1657 190 7 13 chr11 117583415 117583715 -33199838 - AluJb SINE Alu -12 300 3 1012 154 14 136 chr11 117583739 117584025 -33199528 - L1MD3 LINE L1 0 7995 7745 210 297 108 36 chr11 117584029 117584140 -33199413 - MIR3 SINE MIR -40 168 50 2144 48 0 7 chr11 117585069 117585339 -33198214 - AluY SINE Alu -4 307 40 1873 159 23 3 chr11 117586866 117587217 -33196336 + L1MA5 LINE L1 5938 6295 -5 477 321 38 16 chr11 117587292 117587476 -33196077 + MIR SINE MIR 19 206 -56 1457 220 29 75 chr11 117588091 117588168 -33195385 + MLT1D LTR MaLR 5 84 -421 3232 107 7 0 chr11 117588168 117588618 -33194935 + MLT2A2 LTR ERVL 1 453 0 1457 220 29 75 chr11 117588618 117589017 -33194536 + MLT1D LTR MaLR 84 459 -46 455 301 131 10 chr11 117589561 117589767 -33193786 - MIR SINE MIR -19 243 13 24 0 0 0 chr11 117590133 117590157 -33193396 + AT_rich Low_complexity Low_complexity 1 24 0 300 277 13 63 chr11 117590390 117590549 -33193004 + L1ME2 LINE L1 5684 5834 -336 301 267 33 50 chr11 117590707 117590827 -33192726 + L1ME2 LINE L1 5843 5960 -204 2135 106 3 0 chr11 117590874 117591177 -33192376 + AluY SINE Alu 1 304 -7 23 54 0 0 chr11 117591354 117591391 -33192162 + AT_rich Low_complexity Low_complexity 1 37 0 394 257 7 138 chr11 117592904 117593056 -33190497 - L2 LINE L2 0 3272 3141 1045 192 19 10 chr11 117593174 117593382 -33190171 + MER46A DNA MER2_type 18 227 -9 27 62 0 0 chr11 117593382 117593430 -33190123 + AT_rich Low_complexity Low_complexity 1 48 0 28 0 0 0 chr11 117594045 117594073 -33189480 + AT_rich Low_complexity Low_complexity 1 28 0 210 252 168 56 chr11 117594073 117594180 -33189373 + L2 LINE L2 3154 3272 0 27 0 0 0 chr11 117594363 117594390 -33189163 + AT_rich Low_complexity Low_complexity 1 27 0 502 98 53 8 chr11 117594440 117594572 -33188981 + (TA)n Simple_repeat Simple_repeat 1 138 0 223 329 0 59 chr11 117594572 117594657 -33188896 + L2 LINE L2 3230 3309 -4 335 250 163 52 chr11 117595176 117595464 -33188089 + L1M4 LINE L1 4628 4947 -1199 5301 260 54 15 chr11 117595765 117597463 -33186090 - L1MEc LINE L1 -4596 1800 37 2570 62 0 0 chr11 117597638 117597947 -33185606 - AluY SINE Alu -2 309 1 21 36 0 0 chr11 117598265 117598293 -33185260 + AT_rich Low_complexity Low_complexity 1 28 0 791 228 89 5 chr11 117598805 117599007 -33184546 + MER20 DNA MER1_type 1 219 0 320 313 139 7 chr11 117599432 117599576 -33183977 - MIR3 SINE MIR -16 192 30 210 307 57 68 chr11 117600203 117600379 -33183174 - L2 LINE L2 -336 2977 2804 593 174 25 8 chr11 117600381 117600502 -33183051 - MER20 DNA MER1_type 0 219 97 270 311 22 11 chr11 117600616 117600706 -33182847 + MLT1K LTR MaLR 54 144 -444 1472 67 0 0 chr11 117600752 117600932 -33182621 + AluY SINE Alu 127 306 -5 438 282 128 54 chr11 117601078 117601310 -33182243 + MLT1K LTR MaLR 359 580 -8 210 182 195 52 chr11 117601318 117601395 -33182158 + MIR SINE MIR 77 164 -98 26 0 0 0 chr11 117602417 117602443 -33181110 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr11 117602648 117602671 -33180882 + AT_rich Low_complexity Low_complexity 1 23 0 627 263 39 6 chr11 117603799 117603955 -33179598 - MER5B DNA MER1_type -14 164 4 25 31 0 0 chr11 117604383 117604415 -33179138 + AT_rich Low_complexity Low_complexity 1 32 0 1309 178 73 3 chr11 117604865 117605152 -33178401 + L1MC3 LINE L1 7479 7785 0 2180 104 14 0 chr11 117605198 117605495 -33178058 - AluSx SINE Alu -11 301 1 229 291 25 25 chr11 117606116 117606195 -33177358 + L2 LINE L2 3235 3313 0 297 0 0 0 chr11 117606921 117606954 -33176599 + (TG)n Simple_repeat Simple_repeat 2 34 0 316 327 71 86 chr11 117607327 117607663 -33175890 + L2 LINE L2 2920 3250 -22 2092 123 7 3 chr11 117607677 117607977 -33175576 + AluSq SINE Alu 1 301 -12 225 308 41 68 chr11 117608740 117608886 -33174667 + MIR SINE MIR 8 149 -113 242 273 0 0 chr11 117608941 117609007 -33174546 - MIR SINE MIR -14 248 183 27 29 0 0 chr11 117609386 117609420 -33174133 + AT_rich Low_complexity Low_complexity 1 34 0 186 318 15 15 chr11 117609900 117609966 -33173587 + L2 LINE L2 3218 3283 -30 2126 128 0 3 chr11 117609972 117610277 -33173276 + AluSq SINE Alu 1 304 -9 380 370 37 45 chr11 117611556 117612126 -33171427 + L2 LINE L2 2497 3057 -215 186 349 45 0 chr11 117612580 117612646 -33170907 + L2 LINE L2 3122 3190 -82 462 327 13 7 chr11 117612832 117612982 -33170571 - L2 LINE L2 0 3313 3163 22 0 0 0 chr11 117613678 117613700 -33169853 + AT_rich Low_complexity Low_complexity 1 22 0 357 0 37 19 chr11 117613899 117613953 -33169600 + (TA)n Simple_repeat Simple_repeat 1 55 0 5922 129 23 10 chr11 117613966 117615089 -33168464 - L1PA15 LINE L1 -21 6144 4999 * 5991 162 30 12 chr11 117615086 117616221 -33167332 + L1PA15 LINE L1 3850 5004 -1142 360 200 50 0 chr11 117617092 117617172 -33166381 - MER112 DNA MER1_type -176 84 1 979 216 102 6 chr11 117618284 117618608 -33164945 - HsTC2 DNA Tc2 -2 1896 1542 274 281 52 10 chr11 117618621 117618717 -33164836 - HsTC2 DNA Tc2 -597 1301 1202 21 0 0 0 chr11 117618814 117618835 -33164718 + AT_rich Low_complexity Low_complexity 1 21 0 6196 150 16 6 chr11 117618835 117620646 -33162907 - L1MA3 LINE L1 0 6305 4475 296 375 10 35 chr11 117620728 117620928 -33162625 - HERV16 LTR ERVL -3550 1446 1252 287 157 0 71 chr11 117621012 117621082 -33162471 - LTR33 LTR ERVL -2 519 455 8750 77 11 1 chr11 117621236 117623211 -33160342 - L1PA7 LINE L1 0 6154 4167 337 264 264 0 chr11 117623268 117623435 -33160118 - MIR SINE MIR -1 261 51 2090 112 3 13 chr11 117623837 117624142 -33159411 - AluSx SINE Alu -10 302 1 369 0 0 0 chr11 117624488 117624529 -33159024 + (TATG)n Simple_repeat Simple_repeat 2 42 0 2056 114 11 0 chr11 117624532 117624812 -33158741 - AluSp SINE Alu -30 283 1 1079 185 60 41 chr11 117624895 117625209 -33158344 - MER33 DNA MER1_type 0 324 5 4482 90 35 2 chr11 117626029 117626661 -33156892 - L1PA11 LINE L1 0 6174 5522 269 319 117 48 chr11 117626870 117627118 -33156435 + L2 LINE L2 2435 2699 -615 211 235 29 15 chr11 117627502 117627570 -33155983 + L2 LINE L2 3151 3219 -94 181 217 17 50 chr11 117627647 117627707 -33155846 + L2 LINE L2 3255 3312 -1 1753 62 5 0 chr11 117628084 117628292 -33155261 - AluY SINE Alu -10 301 93 512 324 55 17 chr11 117630012 117630250 -33153303 + MIR SINE MIR 2 248 -14 2403 73 0 3 chr11 117630824 117631127 -33152426 - AluY SINE Alu -9 302 1 287 233 38 98 chr11 117632645 117632778 -33150775 - MER112 DNA MER1_type -50 210 86 1859 184 33 6 chr11 117632798 117633134 -33150419 + MER7A DNA MER2_type 1 343 -3 402 223 82 38 chr11 117633497 117633681 -33149872 + LTR16C LTR ERVL 273 464 -27 2073 202 31 73 chr11 117633742 117634320 -33149233 - MLT2B3 LTR ERVL 0 554 1 207 0 0 0 chr11 117635475 117635498 -33148055 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr11 117635503 117635526 -33148027 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr11 117635573 117635595 -33147958 + AT_rich Low_complexity Low_complexity 1 22 0 35295 97 11 30 chr11 117636213 117642472 -33141081 - L1PA6 LINE L1 -9 6145 12 853 62 8 46 chr11 117642886 117643016 -33140537 + L1PA16 LINE L1 6042 6166 0 1618 175 72 88 chr11 117643288 117643491 -33140062 + MLT1C LTR MaLR 1 206 -261 2093 128 0 3 chr11 117643491 117643795 -33139758 + AluSq SINE Alu 1 303 -10 1618 175 72 88 chr11 117643795 117644066 -33139487 + MLT1C LTR MaLR 206 467 0 486 302 26 48 chr11 117648196 117648385 -33135168 + MIR SINE MIR 2 186 -76 210 278 0 0 chr11 117648433 117648487 -33135066 + (TA)n Simple_repeat Simple_repeat 2 55 0 367 355 28 47 chr11 117648675 117648886 -33134667 + MIR SINE MIR 40 246 -16 187 312 97 26 chr11 117648897 117649051 -33134502 + MIR SINE MIR 81 245 -17 336 360 32 24 chr11 117649270 117649395 -33134158 + L2 LINE L2 3147 3272 0 22 0 0 0 chr11 117651724 117651746 -33131807 + AT_rich Low_complexity Low_complexity 1 22 0 502 206 0 47 chr11 117652007 117652114 -33131439 - FLAM_A SINE Alu -28 114 13 21 36 0 0 chr11 117652151 117652179 -33131374 + AT_rich Low_complexity Low_complexity 1 28 0 249 317 40 20 chr11 117652383 117652484 -33131069 + MIR SINE MIR 104 206 -56 21 36 0 0 chr11 117652930 117652958 -33130595 + AT_rich Low_complexity Low_complexity 1 28 0 384 326 102 32 chr11 117652996 117653339 -33130214 + L1MEd LINE L1 712 1078 -5041 21 57 0 0 chr11 117653364 117653399 -33130154 + AT_rich Low_complexity Low_complexity 1 35 0 396 279 45 30 chr11 117653798 117653999 -33129554 - MER2 DNA MER2_type 0 345 142 1146 209 22 33 chr11 117654006 117654279 -33129274 + MER2 DNA MER2_type 76 345 0 23 0 0 0 chr11 117654419 117654442 -33129111 + AT_rich Low_complexity Low_complexity 1 23 0 1606 180 10 29 chr11 117655394 117655700 -33127853 + AluJo SINE Alu 3 302 -10 21 36 0 0 chr11 117656006 117656034 -33127519 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 117657002 117657024 -33126529 + AT_rich Low_complexity Low_complexity 1 22 0 1270 267 76 21 chr11 117657171 117657695 -33125858 - L1ME3A LINE L1 -223 5930 5378 378 306 111 39 chr11 117657711 117658044 -33125509 - L1ME3A LINE L1 -905 5224 4868 2139 94 7 3 chr11 117658066 117658354 -33125199 - AluSg1 SINE Alu -18 291 3 314 273 49 68 chr11 117658564 117658930 -33124623 - L1ME3A LINE L1 -4975 1144 786 325 277 82 36 chr11 117659060 117659280 -33124273 + L1M4 LINE L1 5009 5238 -908 30 0 0 0 chr11 117659483 117659513 -33124040 + AT_rich Low_complexity Low_complexity 1 30 0 223 271 8 147 chr11 117661021 117661096 -33122457 - MIR SINE MIR -41 221 137 2135 112 10 0 chr11 117661096 117661392 -33122161 + AluSc SINE Alu 1 299 -10 2871 72 3 3 chr11 117661392 117661767 -33121786 + L1PA7 LINE L1 5778 6152 -2 223 271 8 147 chr11 117661767 117661819 -33121734 - MIR SINE MIR -123 139 111 23 0 0 0 chr11 117661922 117661945 -33121608 + AT_rich Low_complexity Low_complexity 1 23 0 322 26 0 0 chr11 117662048 117662087 -33121466 + MADE1 DNA Mariner 42 80 0 262 319 34 67 chr11 117662331 117662372 -33121181 + L2 LINE L2 3143 3184 -88 1789 69 0 22 chr11 117662372 117662604 -33120949 + AluY SINE Alu 69 295 -16 262 319 34 67 chr11 117662604 117662681 -33120872 + L2 LINE L2 3184 3257 -15 26 64 0 0 chr11 117662874 117662921 -33120632 + AT_rich Low_complexity Low_complexity 1 47 0 1380 169 85 4 chr11 117663830 117664078 -33119475 + AluJo SINE Alu 6 273 -39 939 300 25 48 chr11 117664274 117664627 -33118926 - MLT1I LTR MaLR -10 399 55 231 36 0 0 chr11 117665039 117665067 -33118486 + (A)n Simple_repeat Simple_repeat 1 28 0 1715 168 0 17 chr11 117665493 117665791 -33117762 - AluJb SINE Alu -15 297 5 462 302 50 19 chr11 117669597 117669756 -33113797 + MER5A DNA MER1_type 26 189 0 239 0 32 0 chr11 117670146 117670177 -33113376 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 351 160 52 10 chr11 117671054 117671360 -33112193 - L1MB2 LINE L1 -2 6169 5872 322 204 21 0 chr11 117671432 117671525 -33112028 + GA-rich Low_complexity Low_complexity 3 97 0 * 379 179 32 0 chr11 117671515 117671610 -33111943 + G-rich Low_complexity Low_complexity 2 99 0 226 324 0 0 chr11 117671632 117671700 -33111853 + GA-rich Low_complexity Low_complexity 4 71 0 269 249 77 39 chr11 117671896 117672077 -33111476 - L1MA3 LINE L1 -177 7547 7360 33 108 0 0 chr11 117672190 117672283 -33111270 + AT_rich Low_complexity Low_complexity 1 93 0 215 91 0 45 chr11 117672283 117672327 -33111226 + (GGGAA)n Simple_repeat Simple_repeat 4 45 0 4744 166 12 30 chr11 117672358 117673912 -33109641 - L1MA3 LINE L1 -397 7327 5823 * 14109 162 25 12 chr11 117673910 117676315 -33107238 - L1MA3 LINE L1 -5121 2444 9 3181 150 5 34 chr11 117676601 117676831 -33106722 + L1P LINE L1 3565 3800 -2346 2319 104 0 0 chr11 117676831 117677130 -33106423 + AluSg SINE Alu 1 299 -11 3181 150 5 34 chr11 117677130 117677480 -33106073 + L1P LINE L1 3800 4128 -2018 * 4325 167 44 19 chr11 117677464 117679189 -33104364 + L1MA9 LINE L1 4344 6116 -196 1683 210 37 82 chr11 117679291 117679800 -33103753 + MLT2B3 LTR ERVL 69 554 0 402 223 82 38 chr11 117679861 117680045 -33103508 - LTR16C LTR ERVL -27 464 273 1859 184 33 6 chr11 117680408 117680744 -33102809 - MER7A DNA MER2_type -3 343 1 287 233 38 98 chr11 117680764 117680897 -33102656 + MER112 DNA MER1_type 86 210 -50 2403 73 0 3 chr11 117682415 117682718 -33100835 + AluY SINE Alu 1 302 -9 512 324 55 17 chr11 117683367 117683605 -33099948 - MIR SINE MIR -14 248 2 1753 62 5 0 chr11 117685325 117685533 -33098020 + AluY SINE Alu 93 301 -10 181 217 17 50 chr11 117685910 117685970 -33097583 - L2 LINE L2 -1 3312 3255 211 235 29 15 chr11 117686047 117686115 -33097438 - L2 LINE L2 -94 3219 3151 269 319 117 48 chr11 117686499 117686747 -33096806 - L2 LINE L2 -615 2699 2435 4482 90 35 2 chr11 117686956 117687588 -33095965 + L1PA11 LINE L1 5522 6174 0 1079 185 60 41 chr11 117688408 117688722 -33094831 + MER33 DNA MER1_type 5 324 0 2056 114 11 0 chr11 117688805 117689085 -33094468 + AluSp SINE Alu 1 283 -30 369 0 0 0 chr11 117689088 117689129 -33094424 + (CATA)n Simple_repeat Simple_repeat 2 42 0 1873 144 0 13 chr11 117689475 117689780 -33093773 + AluSx SINE Alu 1 301 -11 1851 173 20 0 chr11 117689780 117690122 -33093431 + L1P LINE L1 3780 4128 -2018 * 4944 169 50 23 chr11 117690106 117691863 -33091690 + L1MA9 LINE L1 4344 6164 -148 195 69 0 0 chr11 117691863 117691892 -33091661 + (CA)n Simple_repeat Simple_repeat 2 30 0 4944 169 50 23 chr11 117691892 117692046 -33091507 + L1MA9 LINE L1 6164 6312 0 208 306 48 0 chr11 117692108 117692170 -33091383 + L2 LINE L2 3248 3312 -1 * 227 325 0 25 chr11 117692160 117692240 -33091313 + MIR SINE MIR 178 255 -7 280 262 105 20 chr11 117692442 117692565 -33090988 - MIR SINE MIR -61 147 38 11143 58 25 0 chr11 117693254 117694719 -33088834 - L1PA5 LINE L1 -3576 2570 1070 * 21233 40 14 0 chr11 117694718 117698265 -33085288 + L1PA5 LINE L1 2560 6153 -1 250 306 102 7 chr11 117698333 117698480 -33085073 - L3 LINE CR1 -126 1451 1291 279 111 0 0 chr11 117698788 117698833 -33084720 - MADE1 DNA Mariner -34 46 2 1492 103 40 0 chr11 117699013 117699236 -33084317 + L1MA2 LINE L1 6073 6304 0 207 338 14 0 chr11 117699257 117699331 -33084222 + MIR SINE MIR 143 217 -45 1651 198 33 19 chr11 117699926 117700290 -33083263 - MLT1A2 LTR MaLR -2 372 4 432 239 84 36 chr11 117700959 117701126 -33082427 - MIR SINE MIR 0 262 88 2312 91 0 0 chr11 117702614 117702911 -33080642 - AluSx SINE Alu -15 297 1 457 248 131 0 chr11 117702911 117703056 -33080497 - MER97c DNA MER1_type? -925 165 2 267 330 148 9 chr11 117703242 117703357 -33080196 + MIR SINE MIR 20 150 -112 212 130 22 0 chr11 117703446 117703492 -33080061 + (CA)n Simple_repeat Simple_repeat 2 48 0 221 371 66 24 chr11 117703533 117703700 -33079853 - MIR SINE MIR 0 262 89 2053 186 33 35 chr11 117704960 117705512 -33078041 + MLT2A2 LTR ERVL 1 554 0 205 205 0 0 chr11 117705622 117705661 -33077892 + (TA)n Simple_repeat Simple_repeat 2 40 0 230 0 33 0 chr11 117705992 117706022 -33077531 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr11 117707082 117707105 -33076448 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr11 117708472 117708504 -33075049 + AT_rich Low_complexity Low_complexity 1 32 0 186 347 107 50 chr11 117709154 117709275 -33074278 - L2 LINE L2 -2 3270 3143 29 0 0 0 chr11 117709526 117709555 -33073998 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 8 0 chr11 117709986 117710045 -33073508 + AT_rich Low_complexity Low_complexity 1 24 0 413 165 0 0 chr11 117710723 117710808 -33072745 - L1PA13 LINE L1 0 6163 6079 343 304 31 68 chr11 117710988 117711149 -33072404 + MIR SINE MIR 2 156 -106 408 329 86 30 chr11 117711176 117711410 -33072143 - MIR SINE MIR -5 257 11 3319 201 36 25 chr11 117711884 117712845 -33070708 + L1MDb LINE L1 458 1857 -4549 318 44 0 0 chr11 117712845 117712890 -33070663 + L1PA3 LINE L1 6111 6155 0 3319 201 36 25 chr11 117712890 117713071 -33070482 + L1MDb LINE L1 1857 2035 -4371 983 242 40 18 chr11 117713159 117713432 -33070121 + MLT1C LTR MaLR 188 466 -1 2121 258 55 39 chr11 117713467 117714447 -33069106 + L1MDb LINE L1 2889 3884 -2522 2691 145 45 7 chr11 117714744 117715479 -33068074 + L1MA8 LINE L1 5012 5770 -521 5226 146 19 8 chr11 117715503 117716355 -33067198 + Tigger1 DNA MER2_type 1 861 -1557 4669 147 23 4 chr11 117716352 117717143 -33066410 + Tigger1 DNA MER2_type 1613 2418 0 * 1208 174 27 35 chr11 117717144 117717402 -33066151 + L1MA8 LINE L1 5787 6042 -249 22 0 0 0 chr11 117717570 117717592 -33065961 + AT_rich Low_complexity Low_complexity 1 22 0 345 176 29 0 chr11 117717673 117717741 -33065812 + Tigger1 DNA MER2_type 2068 2137 -281 1895 159 3 0 chr11 117717775 117718064 -33065489 - AluSx SINE Alu -22 290 1 24 77 0 0 chr11 117719193 117719245 -33064308 + AT_rich Low_complexity Low_complexity 1 52 0 2023 141 0 0 chr11 117719721 117720034 -33063519 - L1PA16 LINE L1 0 6166 5854 4342 170 54 5 chr11 117720472 117721310 -33062243 - L1PB4 LINE L1 -12 6144 5263 21 36 0 0 chr11 117721572 117721600 -33061953 + AT_rich Low_complexity Low_complexity 1 28 0 1011 74 74 7 chr11 117722719 117722868 -33060685 + MER30 DNA MER1_type 1 159 -71 1455 96 60 5 chr11 117723028 117723246 -33060307 + MER30 DNA MER1_type 1 230 0 1944 222 21 12 chr11 117725384 117725903 -33057650 - L1 LINE L1 -808 5338 4815 217 346 37 52 chr11 117725967 117726103 -33057450 - MIR3 SINE MIR -45 163 30 200 348 56 11 chr11 117726609 117726698 -33056855 - MIR SINE MIR -134 128 36 404 367 0 14 chr11 117726732 117726871 -33056682 + MIR SINE MIR 20 156 -106 410 73 0 0 chr11 117726896 117726951 -33056602 + MLT2A2 LTR ERVL 1 55 -398 5540 78 7 18 chr11 117726958 117727722 -33055831 + HERVL-A2 LTR ERVL 4900 5654 0 3411 78 11 0 chr11 117727722 117728170 -33055383 + MLT2A2 LTR ERVL 1 453 0 189 279 35 47 chr11 117728171 117728257 -33055296 + MIR SINE MIR 178 262 0 232 207 86 0 chr11 117728453 117728511 -33055042 + L1MC/D LINE L1 5693 5755 -2053 602 248 48 71 chr11 117728955 117729208 -33054345 + MLT1J2 LTR MaLR 173 450 0 1288 193 31 102 chr11 117730290 117730710 -33052843 - MLT1B LTR MaLR 0 390 1 418 326 54 29 chr11 117730818 117731060 -33052493 + L2 LINE L2 3059 3306 -7 2418 150 38 5 chr11 117731282 117731729 -33051824 - L1MA9 LINE L1 0 6312 5851 494 305 60 52 chr11 117732261 117732857 -33050696 + L1MEd LINE L1 561 1161 -4958 1552 143 32 4 chr11 117733497 117733748 -33049805 - Tigger2 DNA MER2_type 0 2718 2461 3945 155 60 10 chr11 117733802 117734356 -33049197 - Tigger2 DNA MER2_type -1961 757 157 3696 132 7 3 chr11 117734356 117734948 -33048605 - L1PA14 LINE L1 -1 6160 5567 3945 155 60 10 chr11 117734948 117735114 -33048439 - Tigger2 DNA MER2_type -2561 157 1 242 380 63 14 chr11 117735590 117735732 -33047821 + L2 LINE L2 3124 3272 0 4509 42 16 2 chr11 117736010 117736674 -33046879 - L1P2 LINE L1 -661 5493 4821 5918 38 0 0 chr11 117736674 117737375 -33046178 + L1PA5 LINE L1 5438 6142 -12 338 318 48 126 chr11 117738418 117738880 -33044673 + L2 LINE L2 2846 3271 -1 204 280 189 0 chr11 117738895 117739027 -33044526 + L2 LINE L2 3139 3295 -18 1428 260 104 4 chr11 117739269 117739739 -33043814 + LTR33 LTR ERVL 3 519 -2 281 184 160 80 chr11 117740116 117740251 -33043302 - MER5A DNA MER1_type -37 152 4 1025 107 143 0 chr11 117740616 117740784 -33042769 + L1PB1 LINE L1 5960 6151 0 329 328 98 26 chr11 117741011 117741164 -33042389 - MIR3 SINE MIR -38 170 8 337 67 0 0 chr11 117741365 117741410 -33042143 + L1P5 LINE L1 5658 5702 -449 426 221 0 23 chr11 117742471 117742557 -33040996 + MER5B DNA MER1_type 7 90 -88 1211 270 196 2 chr11 117743083 117743676 -33039877 + L1MC4 LINE L1 7144 7851 -191 364 290 217 11 chr11 117744117 117744403 -33039150 + HAL1b LINE L1 156 500 -848 34 0 0 0 chr11 117744597 117744631 -33038922 + AT_rich Low_complexity Low_complexity 1 34 0 241 314 97 24 chr11 117744707 117744831 -33038722 + MIR SINE MIR 130 262 0 670 293 84 26 chr11 117745873 117746218 -33037335 - MARNA DNA Mariner -217 369 5 240 226 0 0 chr11 117746423 117746476 -33037077 + L1 LINE L1 5223 5275 -871 215 143 86 0 chr11 117746678 117746748 -33036805 + (TA)n Simple_repeat Simple_repeat 1 76 0 1146 188 26 37 chr11 117747230 117747501 -33036052 - L1MB8 LINE L1 -1 6177 5910 286 130 0 72 chr11 117747502 117747571 -33035982 - L1M4 LINE L1 -1091 5055 4992 8572 200 37 46 chr11 117747578 117748549 -33035004 - L1MA5 LINE L1 -5 6997 6019 192 40 0 0 chr11 117748549 117748574 -33034979 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 8572 200 37 46 chr11 117748574 117752894 -33030659 - L1MA5 LINE L1 -983 6019 11 1266 228 37 48 chr11 117752904 117753259 -33030294 - L1M4 LINE L1 -1137 5009 4659 423 0 0 0 chr11 117753259 117753306 -33030247 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1050 165 0 39 chr11 117753311 117753493 -33030060 - AluJb SINE Alu -32 280 106 * 1212 141 0 0 chr11 117753492 117753669 -33029884 + AluSg/x SINE Alu 120 296 -16 21 57 0 0 chr11 117753966 117754001 -33029552 + AT_rich Low_complexity Low_complexity 1 35 0 1654 176 53 15 chr11 117754479 117754820 -33028733 - MLT1A1 LTR MaLR 0 365 12 1754 157 31 40 chr11 117754988 117755312 -33028241 - MER2 DNA MER2_type 0 345 25 573 295 22 27 chr11 117755794 117755977 -33027576 - MIR SINE MIR -71 191 10 2076 143 36 0 chr11 117757014 117757350 -33026203 + MER7A DNA MER2_type 1 346 0 521 271 70 31 chr11 117758350 117758579 -33024974 + LTR68 LTR ERV1 199 436 -304 344 291 163 41 chr11 117759531 117759727 -33023826 + MIR SINE MIR 11 230 -32 180 0 0 0 chr11 117759753 117759773 -33023780 + (CAT)n Simple_repeat Simple_repeat 2 21 0 13593 86 24 51 chr11 117760468 117761401 -33022152 - L1P LINE L1 -959 5187 4231 1226 99 42 5 chr11 117761401 117761588 -33021965 + L1PA7 LINE L1 5954 6152 -2 13593 86 24 51 chr11 117761588 117762801 -33020752 - L1P LINE L1 -1915 4231 3098 2815 67 3 3 chr11 117762801 117763167 -33020386 + L1PA7 LINE L1 5774 6146 -8 36 0 0 0 chr11 117763240 117763276 -33020277 + AT_rich Low_complexity Low_complexity 1 36 0 398 309 32 8 chr11 117763286 117763409 -33020144 + L2 LINE L2 3178 3303 -10 242 282 99 0 chr11 117763531 117763602 -33019951 + MIR3 SINE MIR 108 185 -23 254 333 0 0 chr11 117763608 117763686 -33019867 + GA-rich Low_complexity Low_complexity 3 80 0 9822 40 5 0 chr11 117765652 117767625 -33015928 + L1PA5 LINE L1 4174 6149 -5 24 0 0 0 chr11 117767748 117767772 -33015781 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr11 117767837 117767858 -33015695 + AT_rich Low_complexity Low_complexity 1 21 0 204 358 168 0 chr11 117768358 117768453 -33015100 + L2 LINE L2 3158 3268 -4 1310 229 62 31 chr11 117768681 117769039 -33014514 - MLT1C LTR MaLR -34 433 65 919 316 173 33 chr11 117769073 117770085 -33013468 + L3 LINE CR1 327 1480 -97 6284 90 4 4 chr11 117770152 117771176 -33012377 - L1PA8A LINE L1 0 6131 5109 222 388 103 0 chr11 117771437 117771553 -33012000 + L2 LINE L2 3141 3268 -4 23 54 0 0 chr11 117772143 117772180 -33011373 + AT_rich Low_complexity Low_complexity 1 37 0 789 306 50 36 chr11 117772730 117773031 -33010522 - MLT1K LTR MaLR -30 558 254 1075 200 41 8 chr11 117774192 117774465 -33009088 + MLT1D LTR MaLR 1 322 -183 1251 176 17 0 chr11 117774467 117774706 -33008847 - L1P LINE L1 -1774 4372 4130 5500 126 14 9 chr11 117774706 117776156 -33007397 + L1PA13 LINE L1 4690 6163 0 1017 181 25 8 chr11 117776165 117776356 -33007197 + MLT1D LTR MaLR 308 588 -5 193 335 92 49 chr11 117776598 117776762 -33006791 - L2 LINE L2 -5 3267 3097 490 104 0 39 chr11 117777308 117777385 -33006168 + LTR32 LTR ERVL 15 88 -383 451 162 0 0 chr11 117777365 117777439 -33006114 + LTR32 LTR ERVL 15 88 -383 * 559 95 0 0 chr11 117777419 117777493 -33006060 + LTR32 LTR ERVL 15 88 -383 * 2342 176 45 27 chr11 117777473 117777922 -33005631 + LTR32 LTR ERVL 15 471 0 591 226 41 0 chr11 117778020 117778166 -33005387 + MER103 DNA DNA 2 153 -13 580 290 91 23 chr11 117778271 117778447 -33005106 + MIR3 SINE MIR 16 203 -5 23 54 0 0 chr11 117778732 117778769 -33004784 + AT_rich Low_complexity Low_complexity 1 37 0 224 128 0 43 chr11 117779418 117779465 -33004088 + (TTTTC)n Simple_repeat Simple_repeat 5 49 0 225 0 0 0 chr11 117780743 117780768 -33002785 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 282 339 9 18 chr11 117780772 117780881 -33002672 - L2 LINE L2 -22 3291 3184 2773 72 21 0 chr11 117781182 117781556 -33001997 + L1PA5 LINE L1 5772 6153 -1 184 324 103 14 chr11 117781735 117781880 -33001673 - L2 LINE L2 -267 3005 2848 * 277 332 86 5 chr11 117781861 117782081 -33001472 - L2 LINE L2 -1157 2157 1920 254 281 21 52 chr11 117783007 117783103 -33000450 + MIR SINE MIR 120 212 -50 198 143 0 0 chr11 117783317 117783352 -33000201 + (GA)n Simple_repeat Simple_repeat 2 36 0 1085 286 109 24 chr11 117783399 117783867 -32999686 + MLT1J LTR MaLR 3 510 -1 191 59 0 29 chr11 117783870 117783904 -32999649 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 23 78 0 0 chr11 117783954 117784005 -32999548 + AT_rich Low_complexity Low_complexity 1 51 0 232 356 0 0 chr11 117784172 117784245 -32999308 + L2 LINE L2 2708 2780 -534 2315 75 0 23 chr11 117785539 117785847 -32997706 + AluY SINE Alu 1 301 -10 2258 252 87 13 chr11 117788237 117789533 -32994020 - L1ME LINE L1 -403 5759 4377 34 0 0 0 chr11 117789533 117789567 -32993986 + AT_rich Low_complexity Low_complexity 1 34 0 3538 188 0 2 chr11 117790887 117791503 -32992050 + L1MC1 LINE L1 1 615 -5811 4127 238 59 11 chr11 117791545 117792738 -32990815 + L1MC1 LINE L1 2647 3910 -2516 2523 114 14 3 chr11 117792738 117793098 -32990455 + THE1B LTR MaLR 1 364 0 4127 238 59 11 chr11 117793098 117793222 -32990331 + L1MC1 LINE L1 3910 4027 -2399 1048 100 67 0 chr11 117793235 117793385 -32990168 + AluSg/x SINE Alu 134 293 -16 239 154 0 19 chr11 117793385 117793437 -32990116 + (TA)n Simple_repeat Simple_repeat 1 51 0 6165 203 22 15 chr11 117793437 117793847 -32989706 + L1MC1 LINE L1 4025 4431 -2182 978 190 59 123 chr11 117793847 117794237 -32989316 + MLT1A1 LTR MaLR 1 365 0 6165 203 22 15 chr11 117794237 117796399 -32987154 + L1MC1 LINE L1 4431 6611 -2 258 235 44 0 chr11 117796394 117796462 -32987091 + L1ME3 LINE L1 6091 6161 -1 * 2336 70 0 7 chr11 117797165 117797466 -32986087 + AluY SINE Alu 1 299 -12 1317 170 104 0 chr11 117797561 117797820 -32985733 - AluJb SINE Alu -26 286 1 8894 128 42 28 chr11 117798011 117798869 -32984684 - Tigger1 DNA MER2_type 0 2418 1527 3487 55 40 0 chr11 117798869 117799324 -32984229 - L1PA5 LINE L1 -13 6141 5669 8894 128 42 28 chr11 117799324 117799979 -32983574 - Tigger1 DNA MER2_type -891 1527 883 1838 155 56 0 chr11 117800010 117800333 -32983220 - MER2 DNA MER2_type -1 343 3 200 277 64 53 chr11 117801958 117802052 -32981501 - L2 LINE L2 -11 3302 3208 638 210 62 13 chr11 117802654 117802931 -32980622 - MLT1B LTR MaLR 0 374 1 310 160 101 59 chr11 117802994 117803113 -32980440 + MER65B LTR ERV1 1 124 -407 6641 62 15 2 chr11 117803276 117804453 -32979100 + L1PA7 LINE L1 4962 6149 -5 4012 28 0 0 chr11 117804770 117805239 -32978314 - L1PA3 LINE L1 -3 6152 5684 238 325 25 0 chr11 117805608 117805728 -32977825 + L1ME4a LINE L1 4536 4658 -1488 3020 205 67 6 chr11 117806525 117806718 -32976835 - L1MD2 LINE L1 -4 6355 6175 315 0 0 0 chr11 117806718 117806753 -32976800 + (TG)n Simple_repeat Simple_repeat 2 36 0 3020 205 67 6 chr11 117806753 117807265 -32976288 - L1MD2 LINE L1 -184 6175 5607 505 322 108 5 chr11 117807277 117807656 -32975897 + L1ME4a LINE L1 5517 5934 -187 361 315 102 8 chr11 117807913 117808040 -32975513 + MLT1J2 LTR MaLR 26 164 -286 182 114 0 29 chr11 117808419 117808454 -32975099 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 23 54 0 0 chr11 117810472 117810509 -32973044 + AT_rich Low_complexity Low_complexity 1 37 0 2064 168 30 48 chr11 117810563 117811003 -32972550 - MSTB1 LTR MaLR 0 432 1 474 179 0 0 chr11 117811342 117811437 -32972116 + A-rich Low_complexity Low_complexity 1 95 0 290 206 14 0 chr11 117811634 117811707 -32971846 + GA-rich Low_complexity Low_complexity 2 75 0 303 231 22 60 chr11 117812195 117812377 -32971176 + A-rich Low_complexity Low_complexity 1 175 0 529 168 28 19 chr11 117812446 117812553 -32971000 + L1MCa LINE L1 20 127 -6299 * 1936 209 85 10 chr11 117812532 117813103 -32970450 + L1MCa LINE L1 1569 2231 -4195 834 309 105 37 chr11 117814570 117815027 -32968526 - L2 LINE L2 -15 3298 2811 4367 42 0 0 chr11 117815057 117815586 -32967967 + L1PA4 LINE L1 5625 6153 -2 232 241 0 35 chr11 117816139 117816226 -32967327 + (CA)n Simple_repeat Simple_repeat 1 84 0 1581 159 19 7 chr11 117816863 117817172 -32966381 + L1MA9 LINE L1 6000 6312 0 438 376 9 9 chr11 117817247 117817457 -32966096 - L2 LINE L2 -235 3037 2828 426 323 31 0 chr11 117819253 117819380 -32964173 + MIR SINE MIR 118 248 -14 186 103 0 0 chr11 117819381 117819410 -32964143 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 263 331 98 43 chr11 117819410 117819573 -32963980 + L2 LINE L2 3101 3272 0 196 260 40 0 chr11 117819802 117819852 -32963701 + MIR SINE MIR 112 163 -99 397 368 96 0 chr11 117819951 117820087 -32963466 - L2 LINE L2 -1 3271 3123 274 286 27 0 chr11 117820087 117820199 -32963354 + (TA)n Simple_repeat Simple_repeat 2 116 0 304 321 12 12 chr11 117820800 117820884 -32962669 - L2 LINE L2 -2 3270 3187 739 293 31 27 chr11 117821963 117822188 -32961365 + MIR SINE MIR 24 249 -13 1871 140 0 7 chr11 117822198 117822504 -32961049 + AluJb SINE Alu 2 305 0 371 83 17 0 chr11 117822632 117822692 -32960861 + (GA)n Simple_repeat Simple_repeat 2 62 0 733 182 0 0 chr11 117823612 117823733 -32959820 + AluSq/x SINE Alu 1 121 -191 2250 80 3 0 chr11 117823863 117824152 -32959401 - AluY SINE Alu -21 290 1 26 0 0 0 chr11 117824568 117824594 -32958959 + AT_rich Low_complexity Low_complexity 1 26 0 1023 142 11 33 chr11 117824779 117824962 -32958591 - AluJb SINE Alu -10 302 124 1080 141 23 55 chr11 117825061 117825281 -32958272 - AluY SINE Alu -98 213 1 1428 209 64 9 chr11 117825975 117826305 -32957248 - MER7A DNA MER2_type 0 346 1 614 313 72 19 chr11 117827047 117827309 -32956244 - L3 LINE CR1 -72 1505 1230 265 262 94 57 chr11 117827652 117827740 -32955813 - MIR SINE MIR -79 129 27 712 108 0 0 chr11 117827742 117827844 -32955709 - AluSg/x SINE Alu -19 290 189 521 144 0 31 chr11 117828203 117828300 -32955253 + AluSg SINE Alu 1 94 -216 2714 251 63 12 chr11 117828540 117829371 -32954182 + L1ME1 LINE L1 5255 6127 -39 5132 157 32 7 chr11 117829910 117831503 -32952050 + L1PA16 LINE L1 4520 6144 -22 25 31 0 0 chr11 117831511 117831543 -32952010 + AT_rich Low_complexity Low_complexity 1 32 0 353 224 37 37 chr11 117832721 117832828 -32950725 - MIR SINE MIR 0 262 156 2058 105 3 43 chr11 117832968 117833293 -32950260 + AluSx SINE Alu 1 312 0 25 0 0 0 chr11 117834221 117834246 -32949307 + AT_rich Low_complexity Low_complexity 1 25 0 2159 100 0 20 chr11 117835355 117835654 -32947899 - AluSq SINE Alu -20 293 1 1893 146 54 3 chr11 117837822 117838158 -32945395 - L1MC1 LINE L1 0 6333 5981 287 298 113 60 chr11 117839510 117839758 -32943795 + L2 LINE L2 1837 2097 -1217 22 70 0 0 chr11 117840352 117840395 -32943158 + AT_rich Low_complexity Low_complexity 1 43 0 181 212 121 45 chr11 117840986 117841052 -32942501 + L2 LINE L2 3204 3274 -39 1863 144 0 29 chr11 117841334 117841647 -32941906 + AluJb SINE Alu 1 304 -8 1125 176 0 15 chr11 117841657 117841862 -32941691 + AluJb SINE Alu 85 286 -26 933 127 0 7 chr11 117841913 117842063 -32941490 + L1PA13 LINE L1 6004 6152 -11 445 284 88 65 chr11 117842389 117842730 -32940823 + HAL1 LINE L1 1250 1598 -909 192 111 0 0 chr11 117842788 117842824 -32940729 + (A)n Simple_repeat Simple_repeat 1 36 0 267 316 11 0 chr11 117842924 117843019 -32940534 + (CATATA)n Simple_repeat Simple_repeat 6 101 0 2259 70 7 3 chr11 117843094 117843402 -32940151 + AluSp SINE Alu 1 309 0 22 56 0 0 chr11 117843602 117843638 -32939915 + AT_rich Low_complexity Low_complexity 1 36 0 319 275 136 79 chr11 117843825 117844131 -32939422 + L1M4 LINE L1 2139 2426 -3720 983 146 6 6 chr11 117844131 117844302 -32939251 + L1MB8 LINE L1 6003 6173 -5 319 275 136 79 chr11 117844302 117844348 -32939205 + L1M4 LINE L1 2426 2468 -3678 2190 113 3 3 chr11 117844348 117844658 -32938895 + AluSg SINE Alu 1 310 0 319 275 136 79 chr11 117844658 117844708 -32938845 + L1M4 LINE L1 2468 2565 -3581 399 290 141 65 chr11 117844723 117845367 -32938186 + L1M4 LINE L1 2464 3156 -2990 758 302 95 2 chr11 117845670 117846134 -32937419 + L1M4 LINE L1 3695 4201 -1945 329 269 96 13 chr11 117846196 117846352 -32937201 + L1M4 LINE L1 4877 5045 -1101 27 49 0 0 chr11 117846455 117846496 -32937057 + AT_rich Low_complexity Low_complexity 1 41 0 201 361 82 25 chr11 117847092 117847250 -32936303 - L2 LINE L2 -229 3043 2877 25690 135 18 16 chr11 117848179 117850065 -32933488 - L1PA8A LINE L1 -4 6442 4561 1923 133 39 0 chr11 117850065 117850351 -32933202 - AluSx SINE Alu -15 297 1 25690 135 18 16 chr11 117850351 117852388 -32931165 - L1PA8A LINE L1 -1885 4561 2529 2260 98 24 0 chr11 117852388 117852683 -32930870 - AluSp SINE Alu -11 302 1 25690 135 18 16 chr11 117852683 117853880 -32929673 - L1PA8A LINE L1 -3917 2529 1336 225 65 0 0 chr11 117853880 117853911 -32929642 + (TTG)n Simple_repeat Simple_repeat 3 33 0 25690 135 18 16 chr11 117853911 117855153 -32928400 - L1PA8A LINE L1 -5110 1336 2 297 0 0 0 chr11 117855267 117855300 -32928253 + (T)n Simple_repeat Simple_repeat 1 33 0 25 0 0 0 chr11 117855341 117855366 -32928187 + AT_rich Low_complexity Low_complexity 1 25 0 288 0 0 0 chr11 117855833 117855865 -32927688 + (T)n Simple_repeat Simple_repeat 1 32 0 384 275 115 89 chr11 117856251 117856520 -32927033 - L3 LINE CR1 -83 1494 1219 507 263 125 83 chr11 117857482 117857771 -32925782 + LTR16A LTR ERVL 62 362 -88 405 173 13 0 chr11 117857830 117857905 -32925648 + MLT1-int LTR MaLR 962 1037 -334 249 341 0 0 chr11 117857910 117857995 -32925558 + LTR16A LTR ERVL 366 450 0 244 262 35 48 chr11 117857997 117858142 -32925411 - L1ME LINE L1 -256 5865 5723 209 222 111 0 chr11 117858485 117858539 -32925014 + L2 LINE L2 3250 3309 -4 2071 100 17 37 chr11 117860245 117860545 -32923008 + AluSc SINE Alu 1 294 -15 272 102 20 0 chr11 117860742 117860791 -32922762 + (TA)n Simple_repeat Simple_repeat 1 50 0 1093 229 168 0 chr11 117861870 117862010 -32921543 - L1MC4 LINE L1 -2 8040 7925 270 116 0 0 chr11 117862010 117862053 -32921500 + (CA)n Simple_repeat Simple_repeat 2 44 0 1093 229 168 0 chr11 117862053 117862310 -32921243 - L1MC4 LINE L1 -117 7925 7576 24 0 0 29 chr11 117862655 117862673 -32920880 + AT_rich Low_complexity Low_complexity 1 19 -15 2394 71 0 3 chr11 117862673 117862968 -32920585 + AluY SINE Alu 1 294 -17 24 0 0 29 chr11 117862968 117862984 -32920569 + AT_rich Low_complexity Low_complexity 19 34 0 369 271 86 13 chr11 117863205 117863356 -32920197 + MIR SINE MIR 71 232 -30 266 235 24 0 chr11 117863361 117863446 -32920107 + (TATG)n Simple_repeat Simple_repeat 2 88 0 223 346 39 0 chr11 117863637 117863741 -32919812 + L2 LINE L2 3164 3271 -1 254 269 197 26 chr11 117864045 117864072 -32919481 + L2 LINE L2 3075 3096 -217 2287 103 3 3 chr11 117864072 117864384 -32919169 - AluSx SINE Alu 0 312 1 254 269 197 26 chr11 117864384 117864549 -32919004 + L2 LINE L2 3096 3300 -13 453 191 0 0 chr11 117865669 117865774 -32917779 + GA-rich Low_complexity Low_complexity 4 108 0 297 325 20 53 chr11 117866123 117866274 -32917279 + MER5B DNA MER1_type 17 162 -16 195 42 0 0 chr11 117867903 117867927 -32915626 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6582 181 44 16 chr11 117868518 117869196 -32914357 + L1MC3 LINE L1 5451 6108 -1677 225 0 0 0 chr11 117869196 117869221 -32914332 + (TG)n Simple_repeat Simple_repeat 2 26 0 6582 181 44 16 chr11 117869221 117869925 -32913628 + L1MC3 LINE L1 6108 6872 -913 1595 176 69 0 chr11 117870005 117870351 -32913202 + L1MC3 LINE L1 7416 7785 0 747 171 53 32 chr11 117870708 117870895 -32912658 + L1MC3 LINE L1 5718 5908 -1877 331 329 21 49 chr11 117871616 117871759 -32911794 + MIR SINE MIR 2 140 -122 855 291 19 31 chr11 117871813 117872074 -32911479 - MIR SINE MIR 0 262 5 2569 62 0 0 chr11 117877150 117877458 -32906095 + AluY SINE Alu 1 308 -3 511 255 94 7 chr11 117877489 117877638 -32905915 + MIR SINE MIR 44 205 -57 495 311 55 34 chr11 117878828 117879063 -32904490 + MIR SINE MIR 22 261 -1 439 184 75 164 chr11 117879926 117880127 -32903426 - MIR SINE MIR 0 262 80 643 324 70 11 chr11 117880551 117880823 -32902730 - L2 LINE L2 -217 3096 2809 1005 191 11 5 chr11 117880876 117881064 -32902489 + MER5A DNA MER1_type 1 189 0 181 312 312 6 chr11 117881064 117881209 -32902344 - L2 LINE L2 -569 2745 2553 215 219 0 0 chr11 117881270 117881311 -32902242 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 202 288 113 0 chr11 117882647 117882727 -32900826 - MIR SINE MIR -1 261 173 200 213 32 53 chr11 117883385 117883479 -32900074 - MIR SINE MIR -43 219 128 21 36 0 0 chr11 117884113 117884141 -32899412 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr11 117884603 117884645 -32898908 + AT_rich Low_complexity Low_complexity 1 42 0 2026 136 0 7 chr11 117885343 117885644 -32897909 + AluSx SINE Alu 1 299 -13 192 77 0 103 chr11 117886325 117886364 -32897189 + L2 LINE L2 691 725 -2589 208 224 104 15 chr11 117886980 117887047 -32896506 - L2 LINE L2 -10 3262 3190 355 319 42 8 chr11 117887202 117887321 -32896232 + MIR SINE MIR 15 137 -125 499 71 0 0 chr11 117887355 117887425 -32896128 - L1PA7 LINE L1 -3 6151 6082 216 263 18 35 chr11 117887518 117887575 -32895978 - L2 LINE L2 -83 3189 3134 356 305 61 15 chr11 117888625 117888756 -32894797 - MIR SINE MIR -114 148 12 1814 139 13 40 chr11 117888970 117889272 -32894281 - AluSx SINE Alu -18 294 1 448 245 9 19 chr11 117889364 117889470 -32894083 - MER5B DNA MER1_type 0 178 74 789 272 35 38 chr11 117889826 117890087 -32893466 - MIR SINE MIR -1 261 2 2387 66 0 10 chr11 117890300 117890604 -32892949 - AluSc SINE Alu -8 301 1 24 0 0 0 chr11 117890772 117890796 -32892757 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr11 117891499 117891521 -32892032 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 117891589 117891612 -32891941 + AT_rich Low_complexity Low_complexity 1 23 0 209 344 141 23 chr11 117892399 117892527 -32891026 - L3b LINE CR1 -41 1542 1400 368 264 113 25 chr11 117892547 117892706 -32890847 - MIR SINE MIR -70 192 20 190 288 110 14 chr11 117892724 117892797 -32890756 - L3b LINE CR1 -156 1427 1348 539 293 63 29 chr11 117893171 117893410 -32890143 - MIR SINE MIR 0 262 16 243 276 60 52 chr11 117893489 117893623 -32889930 + MIR SINE MIR 77 211 -51 203 292 104 69 chr11 117895728 117895872 -32887681 + MIR SINE MIR 111 259 -3 209 180 60 0 chr11 117898604 117898654 -32884899 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 24 32 0 0 chr11 117899492 117899523 -32884030 + AT_rich Low_complexity Low_complexity 1 31 0 261 271 34 76 chr11 117899683 117899711 -32883842 - L2 LINE L2 0 3313 3285 2271 98 0 0 chr11 117899711 117900006 -32883547 + AluSx SINE Alu 3 297 -15 261 271 34 76 chr11 117900006 117900095 -32883458 - L2 LINE L2 -28 3285 3201 252 0 0 0 chr11 117900361 117900389 -32883164 + (TG)n Simple_repeat Simple_repeat 2 29 0 1501 270 78 2 chr11 117901762 117902173 -32881380 - LTR16A LTR ERVL -8 442 1 264 365 40 24 chr11 117902192 117902318 -32881235 + MIR SINE MIR 5 133 -75 542 305 106 59 chr11 117902488 117902875 -32880678 - L2 LINE L2 -10 3303 2899 241 330 11 0 chr11 117902987 117903075 -32880478 + MIR SINE MIR 173 261 -1 1585 174 14 18 chr11 117903252 117903533 -32880020 - AluJo SINE Alu -16 296 17 353 196 116 72 chr11 117903963 117904137 -32879416 - MIR SINE MIR -7 255 63 2008 125 17 3 chr11 117905976 117906265 -32877288 + AluSx SINE Alu 1 293 -19 383 233 23 0 chr11 117906534 117906620 -32876933 - L2 LINE L2 0 3272 3185 495 274 20 98 chr11 117907806 117908010 -32875543 + MER5A DNA MER1_type 1 188 -1 279 0 0 0 chr11 117908641 117908672 -32874881 + (A)n Simple_repeat Simple_repeat 1 31 0 195 179 0 0 chr11 117909663 117909702 -32873851 - L2 LINE L2 0 3313 3275 966 81 0 40 chr11 117909978 117910126 -32873427 + L1PA10 LINE L1 6027 6168 0 397 315 133 53 chr11 117910860 117911559 -32871994 - L1M2 LINE L1 -5622 1227 405 235 330 0 19 chr11 117911562 117911665 -32871888 + CT-rich Low_complexity Low_complexity 2 102 0 332 191 0 0 chr11 117913123 117913186 -32870367 + L1MC4 LINE L1 6641 6703 -1339 23 33 0 0 chr11 117913193 117913223 -32870330 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr11 117913251 117913286 -32870267 + AT_rich Low_complexity Low_complexity 1 35 0 204 40 0 0 chr11 117914940 117914965 -32868588 + (CA)n Simple_repeat Simple_repeat 1 25 0 319 313 86 0 chr11 117915801 117915929 -32867624 - MIR SINE MIR -111 151 13 322 329 56 14 chr11 117916108 117916251 -32867302 + MIR3 SINE MIR 53 201 -7 25 51 0 0 chr11 117916711 117916750 -32866803 + AT_rich Low_complexity Low_complexity 1 39 0 1869 247 35 18 chr11 117917448 117917540 -32866013 - MER119 DNA MER1_type -6 577 488 2216 121 0 0 chr11 117917540 117917845 -32865708 + AluSx SINE Alu 1 305 -7 1869 247 35 18 chr11 117917845 117918315 -32865238 - MER119 DNA MER1_type -95 488 5 29 47 0 0 chr11 117918716 117918759 -32864794 + AT_rich Low_complexity Low_complexity 1 43 0 236 176 0 0 chr11 117919802 117919853 -32863700 + Alu SINE Alu 252 302 0 428 329 43 100 chr11 117922099 117922591 -32860962 - L2 LINE L2 0 3272 2809 234 272 97 44 chr11 117922622 117922736 -32860817 - L2 LINE L2 -609 2705 2586 260 290 93 37 chr11 117922749 117922856 -32860697 + MIR SINE MIR 41 153 -109 573 364 159 14 chr11 117922951 117923269 -32860284 - L2 LINE L2 -787 2527 2256 2233 202 36 24 chr11 117923269 117923768 -32859785 + MLT1D LTR MaLR 1 505 0 573 364 159 14 chr11 117923768 117924098 -32859455 - L2 LINE L2 -1058 2256 1785 28 0 0 0 chr11 117924125 117924153 -32859400 + AT_rich Low_complexity Low_complexity 1 28 0 256 100 0 0 chr11 117924195 117924228 -32859325 - MLT2B1 LTR ERVL -7 513 478 438 20 0 0 chr11 117924228 117924279 -32859274 + (CA)n Simple_repeat Simple_repeat 2 52 0 2412 175 50 13 chr11 117924333 117924791 -32858762 - MLT2B1 LTR ERVL -45 475 1 4365 121 6 3 chr11 117924873 117925535 -32858018 + L1PA16 LINE L1 5494 6157 -9 299 44 22 0 chr11 117925645 117925690 -32857863 + (TAAAAA)n Simple_repeat Simple_repeat 2 47 0 1980 157 12 14 chr11 117925772 117926116 -32857437 + MER2 DNA MER2_type 2 344 0 3264 214 40 83 chr11 117926682 117926923 -32856630 + L1MC3 LINE L1 6597 6847 -938 2559 44 0 0 chr11 117926923 117927217 -32856336 + AluY SINE Alu 1 294 -17 3264 214 40 83 chr11 117927217 117927567 -32855986 + L1MC3 LINE L1 6847 7211 -574 334 104 0 0 chr11 117927567 117927615 -32855938 + MLT1F1 LTR MaLR 77 124 -443 3264 214 40 83 chr11 117927615 117928216 -32855337 + L1MC3 LINE L1 7211 7783 -2 1873 57 0 4 chr11 117928779 117929007 -32854546 - AluY SINE Alu -15 296 70 2308 229 35 29 chr11 117929244 117929937 -32853616 + L1ME2 LINE L1 5434 6130 -34 207 395 35 0 chr11 117929966 117930052 -32853501 + L2 LINE L2 3184 3272 0 24 53 0 0 chr11 117930052 117930090 -32853463 + AT_rich Low_complexity Low_complexity 1 38 0 967 53 0 0 chr11 117930553 117930667 -32852886 + AluYa5/8 SINE Alu 191 304 -7 235 287 0 35 chr11 117932489 117932576 -32850977 + CT-rich Low_complexity Low_complexity 4 87 0 3335 90 64 0 chr11 117932744 117933231 -32850322 + L1PA13 LINE L1 5645 6162 -1 1516 218 3 0 chr11 117933323 117933635 -32849918 + MER82 DNA MER2_type 2 314 -339 3075 131 67 9 chr11 117933641 117934176 -32849377 + LTR4 LTR ERV1 31 596 0 1318 240 62 6 chr11 117934182 117934503 -32849050 + MER82 DNA MER2_type 315 653 0 600 255 156 9 chr11 117934506 117934839 -32848714 + Charlie2 DNA MER1_type 2442 2823 -39 27 73 0 0 chr11 117935023 117935078 -32848475 + AT_rich Low_complexity Low_complexity 1 55 0 218 57 75 0 chr11 117935447 117935500 -32848053 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 236 191 75 14 chr11 117935514 117935661 -32847892 + (TTATA)n Simple_repeat Simple_repeat 3 158 0 338 288 64 87 chr11 117937068 117937287 -32846266 - L3 LINE CR1 -273 1304 1091 450 305 141 14 chr11 117937334 117937547 -32846006 - MIR SINE MIR 0 262 23 241 259 0 25 chr11 117937607 117937688 -32845865 + HsTC2 DNA Tc2 1 79 -1819 180 0 0 0 chr11 117937864 117937884 -32845669 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1999 145 10 0 chr11 117938455 117938744 -32844809 + AluSx SINE Alu 1 292 -20 285 274 0 0 chr11 117939257 117939319 -32844234 - MIR SINE MIR -1 261 200 1050 175 4 32 chr11 117939391 117939637 -32843916 + L1MB3 LINE L1 5943 6181 -2 211 207 67 180 chr11 117939935 117940085 -32843468 - L3b LINE CR1 -85 1498 1366 517 340 159 16 chr11 117940274 117940595 -32842958 + L2 LINE L2 2905 3271 -1 596 302 66 67 chr11 117940993 117941094 -32842459 + L2 LINE L2 2686 2786 -527 2524 59 3 7 chr11 117941094 117941401 -32842152 + AluY SINE Alu 1 306 -5 596 302 66 67 chr11 117941401 117941923 -32841630 + L2 LINE L2 2786 3313 0 369 267 153 0 chr11 117942059 117942190 -32841363 + MIR SINE MIR 41 191 -71 180 266 223 53 chr11 117942220 117942314 -32841239 + L2 LINE L2 3202 3311 -2 3088 158 51 2 chr11 117943024 117943593 -32839960 + LTR26 LTR ERV1 1 597 -6 1994 120 77 37 chr11 117943593 117943943 -32839610 + THE1B LTR MaLR 1 364 0 9342 96 105 3 chr11 117943943 117945377 -32838176 + THE1B-int LTR MaLR 1 1580 0 2172 117 79 15 chr11 117945377 117945719 -32837834 + THE1B LTR MaLR 1 364 0 21 57 0 0 chr11 117946100 117946135 -32837418 + AT_rich Low_complexity Low_complexity 1 35 0 635 154 0 9 chr11 117946169 117946279 -32837274 + L1PB4 LINE L1 6035 6143 -13 324 314 77 6 chr11 117946375 117946531 -32837022 - L1ME4a LINE L1 -246 5875 5709 21 0 0 0 chr11 117946784 117946805 -32836748 + AT_rich Low_complexity Low_complexity 1 21 0 706 159 99 88 chr11 117946851 117947033 -32836520 - MLT1A2 LTR MaLR 0 374 191 398 263 18 0 chr11 117947096 117947210 -32836343 - MLT2B1 LTR ERVL -367 153 38 1910 228 22 35 chr11 117947216 117947756 -32835797 + L1PB2 LINE L1 3 535 -6328 1053 87 7 0 chr11 117947770 117947920 -32835633 + L1PB2 LINE L1 2383 2533 -4330 7076 159 31 38 chr11 117947922 117948186 -32835367 + L1PB2 LINE L1 4395 4659 -2203 2399 84 0 3 chr11 117948186 117948483 -32835070 + AluSc SINE Alu 1 296 -13 7076 159 31 38 chr11 117948483 117948770 -32834783 + L1PB2 LINE L1 4659 4946 -1916 952 190 0 0 chr11 117948770 117948933 -32834620 - FRAM SINE Alu -3 163 1 7076 159 31 38 chr11 117948933 117948953 -32834600 + L1PB2 LINE L1 4946 4965 -1897 1469 118 180 8 chr11 117948953 117949198 -32834355 - AluSg SINE Alu -12 288 2 7076 159 31 38 chr11 117949198 117950180 -32833373 + L1PB2 LINE L1 4965 5940 -922 3124 104 12 23 chr11 117950180 117950655 -32832898 + L1PB2 LINE L1 6390 6864 -3 1048 149 88 138 chr11 117950667 117951030 -32832523 + L1MC3 LINE L1 7441 7785 0 26 0 0 0 chr11 117951036 117951062 -32832491 + AT_rich Low_complexity Low_complexity 1 26 0 515 229 14 57 chr11 117951086 117951226 -32832327 - MLT1A2 LTR MaLR -240 134 1 803 103 0 8 chr11 117951236 117951353 -32832200 + ERVL-B1 LTR ERVL 5642 5757 -7 1433 240 81 42 chr11 117951353 117951833 -32831720 + MLT2B1 LTR ERVL 1 499 -21 405 0 0 0 chr11 117952344 117952389 -32831164 + (TG)n Simple_repeat Simple_repeat 2 46 0 3660 153 25 5 chr11 117952449 117953083 -32830470 + L1PB4 LINE L1 5497 6143 -13 1651 174 37 16 chr11 117953573 117953895 -32829658 + MSTB2 LTR MaLR 1 329 -128 684 177 8 39 chr11 117954065 117954195 -32829358 + MSTB2 LTR MaLR 304 429 -3 369 0 0 0 chr11 117954450 117954491 -32829062 + (CA)n Simple_repeat Simple_repeat 2 42 0 180 0 0 0 chr11 117954490 117954510 -32829043 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 662 274 38 80 chr11 117955561 117955939 -32827614 - L2 LINE L2 -8 3305 2872 873 291 37 65 chr11 117955939 117956430 -32827123 + L2 LINE L2 2270 2746 -568 337 311 132 8 chr11 117956688 117957159 -32826394 + L1ME LINE L1 5308 5808 -313 196 77 51 0 chr11 117957209 117957248 -32826305 + (TA)n Simple_repeat Simple_repeat 1 41 0 570 338 91 44 chr11 117957508 117958047 -32825506 + L2 LINE L2 2728 3292 -21 225 0 0 0 chr11 117958092 117958117 -32825436 + (A)n Simple_repeat Simple_repeat 1 25 0 217 236 35 121 chr11 117958917 117959091 -32824462 + MIR SINE MIR 98 256 -6 2376 102 0 3 chr11 117959640 117959953 -32823600 + AluSx SINE Alu 1 312 0 343 211 62 47 chr11 117960550 117960678 -32822875 - MER5A DNA MER1_type -14 175 46 * 501 311 20 14 chr11 117960563 117960711 -32822842 + MER5A DNA MER1_type 40 188 -1 2166 110 3 0 chr11 117961397 117961696 -32821857 - AluSx SINE Alu -12 300 1 362 101 64 0 chr11 117962171 117962280 -32821273 + (TA)n Simple_repeat Simple_repeat 1 116 0 21 36 0 0 chr11 117962288 117962316 -32821237 + AT_rich Low_complexity Low_complexity 1 28 0 189 147 0 0 chr11 117962442 117962476 -32821077 + (A)n Simple_repeat Simple_repeat 1 34 0 533 251 50 50 chr11 117963138 117963317 -32820236 - MIR SINE MIR -83 179 1 22 0 0 0 chr11 117964143 117964165 -32819388 + AT_rich Low_complexity Low_complexity 1 22 0 1084 134 12 12 chr11 117964217 117964388 -32819165 - AluSg/x SINE Alu -10 302 132 276 325 0 25 chr11 117964553 117964633 -32818920 + L2 LINE L2 3160 3237 -35 2608 65 0 0 chr11 117964751 117965057 -32818496 - AluSc SINE Alu -3 306 1 279 0 0 0 chr11 117966232 117966263 -32817290 + (A)n Simple_repeat Simple_repeat 1 31 0 34 24 0 0 chr11 117966297 117966338 -32817215 + AT_rich Low_complexity Low_complexity 1 41 0 2385 99 0 3 chr11 117967278 117967591 -32815962 + AluSx SINE Alu 1 312 0 287 315 56 0 chr11 117968964 117969072 -32814481 + MIR SINE MIR 89 202 -60 929 262 130 87 chr11 117969426 117969759 -32813794 - MLT1F1 LTR MaLR -10 557 191 2592 147 16 21 chr11 117969759 117970188 -32813365 + MSTC LTR MaLR 1 427 -1 929 262 130 87 chr11 117970188 117970356 -32813197 - MLT1F1 LTR MaLR -376 191 32 291 323 75 0 chr11 117972500 117972593 -32810960 + L2 LINE L2 3203 3302 -11 246 116 0 0 chr11 117972692 117972735 -32810818 - L1MB7 LINE L1 -9 6175 6133 2276 107 0 0 chr11 117972831 117973122 -32810431 - AluSg SINE Alu -19 291 1 216 295 197 33 chr11 117973822 117974005 -32809548 - MIR SINE MIR -3 259 47 978 290 131 22 chr11 117974632 117975084 -32808469 - LTR33 LTR ERVL 0 521 21 2185 109 0 22 chr11 117975160 117975473 -32808080 + AluSx SINE Alu 7 312 0 4385 220 21 19 chr11 117975530 117976664 -32806889 + L1ME LINE L1 3418 4553 -1593 5524 68 8 17 chr11 117976682 117977431 -32806122 + MER4E LTR ERV1 25 766 0 351 0 0 0 chr11 117978116 117978155 -32805398 + (TG)n Simple_repeat Simple_repeat 2 40 0 532 222 0 0 chr11 117978162 117978279 -32805274 + L1ME LINE L1 5697 5813 -353 21 57 0 0 chr11 117978534 117978569 -32804984 + AT_rich Low_complexity Low_complexity 1 35 0 2139 244 65 32 chr11 117978622 117979310 -32804243 - L1ME1 LINE L1 -69 6166 5456 878 233 62 45 chr11 117979309 117979459 -32804094 - L1MCb LINE L1 -5743 302 156 * 2038 176 40 21 chr11 117979459 117979880 -32803673 - MSTB1 LTR MaLR 0 432 4 878 233 62 45 chr11 117979880 117980021 -32803532 - L1MCb LINE L1 -5889 156 6 3480 236 59 32 chr11 117980056 117981047 -32802506 - L1ME1 LINE L1 -2642 3573 2552 1521 95 27 0 chr11 117981047 117981269 -32802284 - L1PA13 LINE L1 -5 6158 5931 3480 236 59 32 chr11 117981269 117982038 -32801515 - L1ME1 LINE L1 -3663 2552 1805 1876 140 34 42 chr11 117982040 117982418 -32801135 - THE1C LTR MaLR 0 375 1 7191 134 88 0 chr11 117982418 117983776 -32799777 - THE1C-int LTR MaLR 0 1651 1 1678 177 43 38 chr11 117983776 117984149 -32799404 - THE1C LTR MaLR 0 375 1 2781 269 100 46 chr11 117984149 117985650 -32797903 - L1ME1 LINE L1 -4588 1808 223 2317 107 3 3 chr11 117986894 117987204 -32796349 + AluSp SINE Alu 1 310 -3 243 313 112 8 chr11 117988256 117988430 -32795123 + MIR SINE MIR 30 226 -36 226 323 43 11 chr11 117988428 117988521 -32795032 + MIR SINE MIR 43 138 -70 * 2125 118 3 3 chr11 117989023 117989320 -32794233 + AluSx SINE Alu 1 297 -15 5101 24 0 2 chr11 117990093 117990689 -32792864 + L1PA4 LINE L1 5556 6150 -5 22 56 0 0 chr11 117990727 117990763 -32792790 + AT_rich Low_complexity Low_complexity 1 36 0 2298 105 0 3 chr11 117991028 117991332 -32792221 + AluSx SINE Alu 1 303 -9 4157 216 50 14 chr11 117991484 117992598 -32790955 + L1 LINE L1 2796 3950 -2196 14381 195 37 23 chr11 117992618 117995095 -32788458 + L1PB1 LINE L1 6 2447 -4420 263 49 24 0 chr11 117995095 117995136 -32788417 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 14381 195 37 23 chr11 117995136 117995412 -32788141 + L1PB1 LINE L1 2447 2718 -4149 2214 101 3 0 chr11 117995412 117995699 -32787854 - AluSx SINE Alu -24 288 1 14381 195 37 23 chr11 117995699 117997764 -32785789 + L1PB1 LINE L1 2718 4753 -2114 180 0 0 0 chr11 117997764 117997784 -32785769 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 14381 195 37 23 chr11 117997784 117998163 -32785390 + L1PB1 LINE L1 4753 5125 -1742 6548 63 29 1 chr11 117998163 117999222 -32784331 + L1PA7 LINE L1 5071 6154 0 14381 195 37 23 chr11 117999222 118000232 -32783321 + L1PB1 LINE L1 5125 6513 -354 533 15 15 0 chr11 118000232 118000298 -32783255 + (TG)n Simple_repeat Simple_repeat 1 67 0 14381 195 37 23 chr11 118000298 118000657 -32782896 + L1PB1 LINE L1 6513 6866 -1 2025 180 39 78 chr11 118000660 118001281 -32782272 + L1 LINE L1 3915 4514 -1632 385 253 11 0 chr11 118001295 118001390 -32782163 + L1ME1 LINE L1 3759 3854 -2292 24 0 0 0 chr11 118001405 118001429 -32782124 + AT_rich Low_complexity Low_complexity 1 24 0 4311 222 68 47 chr11 118001440 118002917 -32780636 + L1ME1 LINE L1 3840 5347 -799 3401 270 26 27 chr11 118002916 118005120 -32778433 + L1PBa LINE L1 7 1639 -5224 * 2165 199 65 21 chr11 118005126 118005246 -32778307 + L1PB3 LINE L1 709 822 -5389 2261 122 105 13 chr11 118005246 118005638 -32777915 - MSTA LTR MaLR 0 428 1 2165 199 65 21 chr11 118005638 118010552 -32773001 + L1PB3 LINE L1 822 6211 0 2882 237 37 32 chr11 118010557 118011372 -32772181 + L1ME1 LINE L1 5327 6145 -21 23 0 0 0 chr11 118011462 118011485 -32772068 + AT_rich Low_complexity Low_complexity 1 23 0 303 264 120 64 chr11 118011764 118012014 -32771539 + L1M4 LINE L1 2149 2412 -3734 308 321 45 30 chr11 118012210 118012344 -32771209 + MER5A DNA MER1_type 32 167 -22 428 298 103 38 chr11 118012617 118012970 -32770583 + L1M4 LINE L1 2889 3264 -2882 352 271 138 44 chr11 118013000 118013181 -32770372 + L1ME1 LINE L1 5964 6161 -5 854 273 91 11 chr11 118013745 118014009 -32769544 + L2 LINE L2 2478 2762 -552 828 250 104 0 chr11 118014021 118014241 -32769312 + MLT1F1 LTR MaLR 325 567 0 5972 101 18 1 chr11 118014927 118016667 -32766886 + L1PA13 LINE L1 4397 6163 0 203 189 38 19 chr11 118017910 118017963 -32765590 + L2 LINE L2 3030 3083 -189 1722 153 11 0 chr11 118017973 118018234 -32765319 - MER66B LTR ERV1 0 486 223 1971 200 28 13 chr11 118018783 118019173 -32764380 + MSTD LTR MaLR 1 396 0 369 43 0 0 chr11 118019463 118019510 -32764043 + (CA)n Simple_repeat Simple_repeat 1 47 0 196 237 17 34 chr11 118019972 118020031 -32763522 - L2 LINE L2 -1313 2001 1944 20603 163 45 23 chr11 118021259 118024859 -32758694 + L1M1 LINE L1 14 3756 -3809 459 0 0 0 chr11 118024859 118024910 -32758643 + (CA)n Simple_repeat Simple_repeat 2 52 0 20603 163 45 23 chr11 118024910 118026223 -32757330 + L1M1 LINE L1 3756 5038 -2527 2488 116 5 33 chr11 118026223 118026638 -32756915 + L1MA3 LINE L1 5894 6305 0 2116 119 17 7 chr11 118027009 118027302 -32756251 + AluSg SINE Alu 2 297 -13 389 173 136 12 chr11 118027319 118027400 -32756153 + MER5A DNA MER1_type 13 103 -86 815 286 54 11 chr11 118027453 118027729 -32755824 - LTR33 LTR ERVL -177 344 57 2766 13 0 0 chr11 118028424 118028726 -32754827 - AluY SINE Alu -8 303 2 285 325 83 57 chr11 118029099 118029658 -32753895 + L2 LINE L2 2461 3034 -238 2248 87 0 37 chr11 118030916 118031238 -32752315 - AluSx SINE Alu -1 311 2 875 280 39 13 chr11 118031388 118031774 -32751779 - L1ME4a LINE L1 -230 5891 5496 305 279 265 31 chr11 118032038 118032332 -32751221 - L3 LINE CR1 -71 1506 1144 280 306 25 141 chr11 118032355 118032597 -32750956 + L2 LINE L2 2972 3185 -87 290 266 0 25 chr11 118033268 118033347 -32750206 + Charlie8 DNA MER1_type 1350 1416 -1001 22 0 0 0 chr11 118033477 118033499 -32750054 + AT_rich Low_complexity Low_complexity 1 22 0 424 360 77 27 chr11 118033634 118034231 -32749322 - L2 LINE L2 -955 2359 1733 392 345 89 5 chr11 118035023 118035214 -32748339 - MIR SINE MIR -7 255 49 1400 54 0 59 chr11 118036046 118036249 -32747304 + MER107 DNA MER1_type 6 196 -1 1852 104 22 22 chr11 118036528 118036797 -32746756 + AluSc SINE Alu 33 301 -8 2657 139 20 36 chr11 118036991 118037336 -32746217 + L1MC3 LINE L1 6987 7323 -462 2262 99 10 0 chr11 118037336 118037629 -32745924 + AluSq SINE Alu 5 300 -13 2657 139 20 36 chr11 118037629 118037779 -32745774 + L1MC3 LINE L1 7323 7474 -311 1474 219 98 6 chr11 118037781 118038109 -32745444 + MLT1A1 LTR MaLR 1 358 -7 1494 159 3 95 chr11 118038109 118038455 -32745098 + L1MC3 LINE L1 7471 7784 -1 417 248 113 107 chr11 118038545 118038812 -32744741 + MIR SINE MIR 2 239 -2 580 283 58 17 chr11 118039678 118039901 -32743652 + MIR SINE MIR 6 248 -14 207 325 0 24 chr11 118043108 118043191 -32740362 + CT-rich Low_complexity Low_complexity 1 81 0 194 105 26 0 chr11 118043962 118044000 -32739553 + (CA)n Simple_repeat Simple_repeat 2 40 0 5682 139 30 43 chr11 118044362 118045448 -32738105 - MER11C LTR ERVK 0 1071 1 395 282 96 11 chr11 118045596 118045784 -32737769 - LTR33A LTR ERVL -45 478 275 585 201 50 38 chr11 118045849 118046008 -32737545 - LTR33A LTR ERVL -362 161 1 2346 161 71 4 chr11 118046288 118046766 -32736787 - L1MB7 LINE L1 0 6184 5675 6478 227 51 27 chr11 118046790 118047888 -32735665 - L1M4c LINE L1 -4544 2100 895 1571 204 65 0 chr11 118047888 118048211 -32735342 + MER7A DNA MER2_type 4 345 -1 6478 227 51 27 chr11 118048211 118049113 -32734440 - L1M4c LINE L1 -5749 895 16 546 278 22 0 chr11 118049485 118049665 -32733888 + L1M4 LINE L1 4495 4678 -1468 347 238 48 0 chr11 118049846 118049951 -32733602 - L1M4 LINE L1 -1541 4605 4496 286 305 38 0 chr11 118050528 118050633 -32732920 - MLT1H1 LTR MaLR 0 595 487 339 314 55 50 chr11 118050648 118050868 -32732685 - MLT1H1 LTR MaLR -184 371 151 452 311 82 72 chr11 118051687 118052071 -32731482 + MLT1K LTR MaLR 57 451 -137 1241 222 28 74 chr11 118052142 118052534 -32731019 - MLT1A2 LTR MaLR 0 374 1 4448 173 39 34 chr11 118053028 118054072 -32729481 + MER65B-int LTR ERV1 1468 2494 -2377 1408 175 48 69 chr11 118054152 118054780 -32728773 + MER65B-int LTR ERV1 1542 2350 -4408 380 182 57 57 chr11 118055047 118055135 -32728418 + MER65B-int LTR ERV1 1424 1511 -2680 2740 185 101 84 chr11 118055187 118055545 -32728008 + MER65B-int LTR ERV1 3493 3843 -2488 1692 138 90 36 chr11 118055545 118055901 -32727652 - THE1C LTR MaLR 0 375 1 2740 185 101 84 chr11 118055901 118056751 -32726802 + MER65B-int LTR ERV1 3843 4758 -1573 1745 187 14 0 chr11 118056751 118057045 -32726508 + AluJb SINE Alu 1 298 -14 2740 185 101 84 chr11 118057045 118057397 -32726156 + MER65B-int LTR ERV1 4758 5103 -1228 293 215 13 51 chr11 118057404 118057483 -32726070 + MER65B-int LTR ERV1 3884 3959 -977 266 93 148 19 chr11 118057506 118057560 -32725993 + MER65B-int LTR ERV1 5337 5397 -934 1791 256 73 2 chr11 118057568 118057993 -32725560 + MER65B-int LTR ERV1 3606 4060 -811 * 1806 249 34 19 chr11 118057976 118058453 -32725100 + MER65B-int LTR ERV1 4388 4871 0 285 29 0 0 chr11 118058453 118058487 -32725066 + MER65B LTR ERV1 1 34 -497 2305 126 62 21 chr11 118059092 118059480 -32724073 + MER65A LTR ERV1 42 445 0 13302 168 39 49 chr11 118059483 118062162 -32721391 + LTR49-int LTR ERV1 1416 4067 -124 5903 168 44 10 chr11 118062283 118064372 -32719181 + L1MA7 LINE L1 4128 6285 -6 22 35 0 0 chr11 118064424 118064453 -32719100 + AT_rich Low_complexity Low_complexity 1 29 0 777 191 89 90 chr11 118064813 118065156 -32718397 - L1MC5 LINE L1 -776 7185 6873 669 285 24 9 chr11 118065586 118065844 -32717709 - L1M4 LINE L1 -636 5603 5339 570 136 58 10 chr11 118065906 118066009 -32717544 + Tigger5 DNA MER2_type 2215 2322 -1 597 254 124 4 chr11 118066017 118066292 -32717261 - L1M4 LINE L1 -918 5297 4990 2422 263 63 28 chr11 118066334 118067330 -32716223 - L1M4 LINE L1 -1832 4383 3353 1477 244 111 31 chr11 118067350 118067779 -32715774 - L1M4 LINE L1 -2916 3299 2906 2228 105 0 20 chr11 118067779 118068084 -32715469 + AluSx SINE Alu 1 299 -13 1477 244 111 31 chr11 118068084 118068392 -32715161 - L1M4 LINE L1 -3309 2906 2503 1600 204 75 9 chr11 118068435 118068753 -32714800 - MER1B DNA MER1_type 0 339 1 684 272 24 12 chr11 118068771 118069025 -32714528 - L1M4 LINE L1 -3761 2454 2198 1567 293 89 75 chr11 118069032 118069772 -32713781 - L1M4 LINE L1 -4249 2147 1420 1585 197 0 23 chr11 118069772 118070071 -32713482 - AluJb SINE Alu -15 297 6 5337 118 19 1 chr11 118070080 118071505 -32712048 - L1PA13 LINE L1 -4 6159 4690 1567 293 89 75 chr11 118071505 118072834 -32710719 - L1M4 LINE L1 -4983 1413 37 347 287 164 75 chr11 118072909 118073324 -32710229 - HAL1b LINE L1 -567 781 330 26 30 0 0 chr11 118073719 118073752 -32709801 + AT_rich Low_complexity Low_complexity 1 33 0 31 26 0 0 chr11 118075548 118075586 -32707967 + AT_rich Low_complexity Low_complexity 1 38 0 263 283 47 47 chr11 118075630 118075736 -32707817 + MIR SINE MIR 110 215 -47 332 345 149 16 chr11 118076210 118076465 -32707088 - L2 LINE L2 -8 3264 2976 507 293 88 25 chr11 118076490 118076729 -32706824 + MIR SINE MIR 9 262 0 229 300 23 15 chr11 118077066 118077196 -32706357 - L1ME4a LINE L1 -6 6115 5985 417 259 0 43 chr11 118079489 118079647 -32703906 - L1MC4a LINE L1 -362 5800 5683 1737 145 0 4 chr11 118079963 118080239 -32703314 + AluSx SINE Alu 1 275 -37 30 0 0 0 chr11 118080649 118080679 -32702874 + AT_rich Low_complexity Low_complexity 1 30 0 925 83 31 94 chr11 118081593 118081785 -32701768 + L1MB2 LINE L1 5990 6169 -2 280 350 102 11 chr11 118082224 118082401 -32701152 - MIR SINE MIR -50 212 20 1759 147 155 11 chr11 118082534 118082908 -32700645 - MSTA LTR MaLR 0 428 1 4845 120 3 7 chr11 118083209 118083586 -32699967 + L1PA16 LINE L1 5418 5792 -374 321 26 0 0 chr11 118083586 118083624 -32699929 + (CA)n Simple_repeat Simple_repeat 2 39 0 4845 120 3 7 chr11 118083624 118083989 -32699564 + L1PA16 LINE L1 5792 6157 -9 294 273 124 25 chr11 118084472 118084593 -32698960 + MIR3 SINE MIR 55 187 -21 1931 107 66 3 chr11 118085134 118085423 -32698130 + AluSx SINE Alu 1 307 -5 293 325 72 36 chr11 118085430 118085624 -32697929 + MIR SINE MIR 29 229 -33 * 647 275 122 13 chr11 118085583 118085812 -32697741 - MIR SINE MIR -3 259 6 189 262 0 0 chr11 118085829 118085871 -32697682 + L2 LINE L2 3210 3251 -21 2439 143 56 14 chr11 118087406 118087890 -32695663 - L1MA9 LINE L1 -2 6310 5807 861 134 52 12 chr11 118087896 118088068 -32695485 - L1MA8 LINE L1 -7 7703 7525 11456 188 31 26 chr11 118088130 118088963 -32694590 - L1MA8 LINE L1 -185 7525 6698 8086 140 12 2 chr11 118088963 118090252 -32693301 + HSMAR2 DNA Mariner 1 1301 -1 11456 188 31 26 chr11 118090252 118092561 -32690992 - L1MA8 LINE L1 -1012 6698 4350 2487 214 11 21 chr11 118092561 118093081 -32690472 - MLT2B2 LTR ERVL 0 515 1 11456 188 31 26 chr11 118093081 118093328 -32690225 - L1MA8 LINE L1 -3360 4350 4106 3148 263 47 18 chr11 118093328 118094894 -32688659 - L1MA8 LINE L1 -4074 3491 2014 602 66 0 0 chr11 118096140 118096216 -32687337 - L1P LINE L1 -1553 4593 4518 7514 37 0 0 chr11 118096216 118097724 -32685829 + L1PA5 LINE L1 4637 6147 -7 405 0 0 0 chr11 118097724 118097769 -32685784 + (TA)n Simple_repeat Simple_repeat 2 46 0 1612 179 25 28 chr11 118099202 118099527 -32684026 - L1PA16 LINE L1 -9 6157 5834 349 243 45 9 chr11 118100873 118100984 -32682569 - MER20B DNA MER1_type -4 779 665 383 271 117 53 chr11 118101034 118101222 -32682331 - MER20B DNA MER1_type -582 201 2 2416 78 0 0 chr11 118101347 118101654 -32681899 - AluY SINE Alu -2 309 3 198 331 106 35 chr11 118102109 118102251 -32681302 - L2 LINE L2 -1 3312 3161 773 245 15 59 chr11 118102306 118102510 -32681043 + MIR SINE MIR 21 215 -47 304 280 43 0 chr11 118102752 118102845 -32680708 + L2 LINE L2 3215 3311 -2 421 248 146 37 chr11 118102851 118103146 -32680407 + L1ME4a LINE L1 5792 6118 -3 784 290 31 4 chr11 118104647 118104902 -32678651 - MIR SINE MIR 0 262 1 192 426 78 0 chr11 118105768 118105883 -32677670 + MIR SINE MIR 37 160 -102 201 147 0 0 chr11 118105891 118105925 -32677628 + (GAA)n Simple_repeat Simple_repeat 2 35 0 2393 128 122 8 chr11 118106150 118106534 -32677019 - MSTA LTR MaLR 0 428 1 9624 159 49 9 chr11 118106534 118108122 -32675431 - MSTA-int LTR MaLR 0 1651 1 2199 146 140 8 chr11 118108122 118108500 -32675053 - MSTA LTR MaLR 0 428 1 31 26 0 0 chr11 118108589 118108627 -32674926 + AT_rich Low_complexity Low_complexity 1 38 0 2149 133 0 0 chr11 118108654 118108956 -32674597 + AluSq SINE Alu 1 302 -11 2090 164 35 15 chr11 118109256 118109597 -32673956 - MER7A DNA MER2_type 0 346 1 312 365 19 19 chr11 118109693 118109849 -32673704 - MIR3 SINE MIR -3 205 50 188 191 0 43 chr11 118109859 118109906 -32673647 - MIR SINE MIR 0 262 218 1078 175 87 9 chr11 118110052 118110198 -32673355 - L1MA9 LINE L1 0 6312 6140 369 0 0 0 chr11 118110198 118110239 -32673314 + (TG)n Simple_repeat Simple_repeat 2 42 0 1078 175 87 9 chr11 118110239 118110321 -32673232 - L1MA9 LINE L1 -172 6140 6066 431 254 110 44 chr11 118111235 118111463 -32672090 - HAL1 LINE L1 -6 2501 2259 2174 230 133 32 chr11 118111505 118112444 -32671109 - HAL1 LINE L1 -354 2153 1120 301 319 50 38 chr11 118113055 118113215 -32670338 - HAL1 LINE L1 -2191 316 155 767 285 31 50 chr11 118113472 118113791 -32669762 + LTR16C LTR ERVL 50 362 -129 551 300 74 5 chr11 118114499 118114689 -32668864 - MER20B DNA MER1_type -580 203 1 2017 150 6 10 chr11 118114841 118115154 -32668399 + AluSx SINE Alu 1 312 0 272 27 27 0 chr11 118115197 118115234 -32668319 + (TC)n Simple_repeat Simple_repeat 1 38 0 484 314 38 16 chr11 118115327 118115512 -32668041 + MLT1L LTR MaLR 427 615 0 576 267 144 30 chr11 118115792 118116062 -32667491 - MLT1J LTR MaLR -4 507 207 342 257 56 95 chr11 118116072 118116251 -32667302 + L1MA9 LINE L1 6047 6218 -94 312 70 0 0 chr11 118116268 118116311 -32667242 + (CA)n Simple_repeat Simple_repeat 2 44 0 618 323 10 10 chr11 118116371 118116572 -32666981 - MLT1J LTR MaLR -302 209 9 375 251 49 98 chr11 118116579 118116742 -32666811 + L2 LINE L2 2957 3111 -161 312 70 0 0 chr11 118116772 118116815 -32666738 + (CA)n Simple_repeat Simple_repeat 1 43 0 2179 100 0 32 chr11 118117503 118117814 -32665739 + AluSq SINE Alu 1 301 -12 794 283 101 15 chr11 118118465 118118871 -32664682 - LTR37B LTR ERV1 0 468 28 2095 212 31 66 chr11 118118871 118119113 -32664440 - MER90 LTR ERV1 0 575 326 1796 153 3 35 chr11 118119113 118119426 -32664127 + AluSx SINE Alu 1 303 -9 2095 212 31 66 chr11 118119426 118119772 -32663781 - MER90 LTR ERV1 -249 326 8 276 30 0 0 chr11 118119921 118119954 -32663599 + (CAT)n Simple_repeat Simple_repeat 3 35 0 662 121 0 10 chr11 118121141 118121240 -32662313 + MER4A LTR ERV1 1 98 -566 1925 116 159 68 chr11 118121240 118121610 -32661943 + MER4A LTR ERV1 261 664 0 218 214 0 0 chr11 118121861 118121903 -32661650 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 1227 261 146 40 chr11 118121935 118122436 -32661117 + MLT1G LTR MaLR 34 587 -3 1263 102 112 5 chr11 118122988 118123184 -32660369 + AluSg/x SINE Alu 94 310 -2 845 118 8 0 chr11 118123188 118123307 -32660246 + AluSq/x SINE Alu 15 134 -179 226 222 5 0 chr11 118123324 118123383 -32660170 - MIR SINE MIR -47 161 101 405 185 0 0 chr11 118123590 118123655 -32659898 + Alu SINE Alu 234 298 -14 331 265 41 20 chr11 118123747 118123845 -32659708 - MIR SINE MIR -158 104 5 348 219 37 0 chr11 118123966 118124048 -32659505 + MIR SINE MIR 4 88 -174 622 209 104 22 chr11 118124049 118124231 -32659322 - MLT1F LTR MaLR 0 542 346 268 235 25 49 chr11 118124218 118124299 -32659254 - MLT1F LTR MaLR -355 194 116 * 536 276 40 17 chr11 118124329 118124503 -32659050 + MIR SINE MIR 85 262 0 382 318 56 52 chr11 118125735 118125968 -32657585 - MLT1K LTR MaLR -165 423 190 1125 103 0 0 chr11 118126888 118127043 -32656510 - L1MA4 LINE L1 -2 6298 6144 225 65 0 0 chr11 118127158 118127189 -32656364 + (CA)n Simple_repeat Simple_repeat 1 31 0 2551 48 0 0 chr11 118127631 118127924 -32655629 - AluY SINE Alu -18 293 1 1110 65 0 0 chr11 118129538 118129676 -32653877 + AluSp/q SINE Alu 174 311 -2 180 0 0 0 chr11 118129946 118129966 -32653587 + (TC)n Simple_repeat Simple_repeat 1 20 0 2010 114 0 18 chr11 118130110 118130390 -32653163 + AluSx SINE Alu 1 275 -37 303 28 0 0 chr11 118130394 118130430 -32653123 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 673 338 89 19 chr11 118131163 118131693 -32651860 - L2 LINE L2 -94 3219 2645 429 150 0 47 chr11 118133231 118133575 -32649978 + (TA)n Simple_repeat Simple_repeat 1 327 0 3361 57 2 2 chr11 118133575 118133979 -32649574 - MLT2A1 LTR ERVL -40 404 1 7542 54 21 13 chr11 118133979 118134917 -32648636 - HERVL-A1-A1 LTR ERVL 0 5654 4709 * 36490 68 6 0 chr11 118134914 118139413 -32644140 - HERVL-A1-A1 LTR ERVL -1131 4523 1 3705 72 5 5 chr11 118139413 118139857 -32643696 - MLT2A1 LTR ERVL 0 444 1 416 336 96 56 chr11 118139861 118140046 -32643507 + L2 LINE L2 2263 2439 -833 2536 94 47 44 chr11 118140046 118140409 -32643144 + THE1B LTR MaLR 1 364 0 416 336 96 56 chr11 118140409 118141039 -32642514 + L2 LINE L2 2439 3112 -160 242 300 0 0 chr11 118141566 118141616 -32641937 + L2 LINE L2 3137 3186 -86 2463 130 122 8 chr11 118142685 118143069 -32640484 - MSTA LTR MaLR 0 428 1 2188 127 3 0 chr11 118143263 118143571 -32639982 + AluSq SINE Alu 3 311 -2 213 94 0 0 chr11 118144222 118144254 -32639299 + (TG)n Simple_repeat Simple_repeat 1 32 0 192 77 0 0 chr11 118145032 118145058 -32638495 + (A)n Simple_repeat Simple_repeat 1 26 0 1694 129 0 41 chr11 118145058 118145352 -32638201 + AluSx SINE Alu 15 296 -16 732 222 63 11 chr11 118145370 118145559 -32637994 + MSTC LTR MaLR 230 428 0 1347 241 26 61 chr11 118145621 118145900 -32637653 + Charlie4a DNA MER1_type 4 262 -1699 798 156 0 30 chr11 118145900 118146035 -32637518 + FLAM_C SINE Alu 3 133 0 1347 241 26 61 chr11 118146035 118146212 -32637341 + Charlie4a DNA MER1_type 262 444 -64 2356 95 3 0 chr11 118146223 118146527 -32637026 + AluY SINE Alu 1 305 -6 2328 84 7 0 chr11 118146627 118146949 -32636604 + AluSp SINE Alu 1 324 0 665 130 0 0 chr11 118146957 118147049 -32636504 + AluJ/FLAM SINE Alu 11 102 -210 1395 146 2 14 chr11 118147485 118147718 -32635835 + L1PB4 LINE L1 5928 6275 -25 34 0 0 0 chr11 118147718 118147752 -32635801 + AT_rich Low_complexity Low_complexity 1 34 0 475 295 55 20 chr11 118147793 118147993 -32635560 + PABL_B LTR ERV1 1 207 -460 1058 239 40 55 chr11 118147999 118148326 -32635227 + PABL_B LTR ERV1 346 667 0 720 214 69 12 chr11 118148327 118148500 -32635053 + L1M4 LINE L1 4777 4959 -1187 2309 109 0 0 chr11 118148540 118148852 -32634701 + AluSx SINE Alu 1 312 0 235 221 16 156 chr11 118148853 118148975 -32634578 - MIR SINE MIR -82 126 21 2167 92 7 3 chr11 118149566 118149869 -32633684 - AluSp SINE Alu 0 304 1 1088 220 44 4 chr11 118150128 118150355 -32633198 + MLT1A1 LTR MaLR 130 365 0 223 319 11 33 chr11 118150939 118151030 -32632523 + MIR SINE MIR 26 114 -148 290 286 50 36 chr11 118151033 118151173 -32632380 - MIR SINE MIR -4 258 117 445 188 5 97 chr11 118151174 118151263 -32632290 - MLT1I LTR MaLR 0 428 359 1843 171 11 0 chr11 118151263 118151550 -32632003 + AluJo SINE Alu 1 290 -22 445 188 5 97 chr11 118151550 118151607 -32631946 - MLT1I LTR MaLR -69 359 298 1436 143 9 9 chr11 118151657 118151881 -32631672 + AluJb SINE Alu 59 282 -30 1403 205 15 22 chr11 118151970 118152106 -32631447 - AluJb SINE Alu -44 268 133 2333 98 10 0 chr11 118152106 118152402 -32631151 - AluSp SINE Alu -14 299 1 1403 205 15 22 chr11 118152402 118152533 -32631020 - AluJb SINE Alu -179 133 3 2185 104 0 7 chr11 118152665 118152962 -32630591 - AluSx SINE Alu -17 295 1 2102 119 7 0 chr11 118153076 118153369 -32630184 - AluSx SINE Alu -17 295 1 21 36 0 0 chr11 118153643 118153671 -32629882 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr11 118153928 118153956 -32629597 + AT_rich Low_complexity Low_complexity 1 28 0 884 132 71 66 chr11 118154053 118154171 -32629382 - L1PB1 LINE L1 -3 6148 6027 2213 81 0 10 chr11 118154171 118154466 -32629087 - AluSc SINE Alu -17 292 1 884 132 71 66 chr11 118154466 118154544 -32629009 - L1PB1 LINE L1 -124 6027 5951 207 359 44 28 chr11 118154644 118154825 -32628728 + L2 LINE L2 696 879 -2435 2015 133 33 0 chr11 118155292 118155594 -32627959 - AluSx SINE Alu 0 312 1 2154 118 3 0 chr11 118156469 118156757 -32626796 - AluSg SINE Alu -21 289 1 262 359 26 26 chr11 118156871 118156988 -32626565 + MIR SINE MIR 56 172 -90 2083 115 4 0 chr11 118157088 118157367 -32626186 - AluSx SINE Alu -32 280 1 2064 139 3 0 chr11 118157970 118158273 -32625280 - AluSq SINE Alu -9 304 1 221 234 208 0 chr11 118158417 118158494 -32625059 + L2 LINE L2 3221 3313 0 1892 151 3 3 chr11 118158601 118158885 -32624668 + AluJb SINE Alu 1 284 -28 3004 191 17 54 chr11 118159113 118159614 -32623939 - L1 LINE L1 -3225 3623 3160 2215 111 0 0 chr11 118159614 118159903 -32623650 - AluSx SINE Alu -23 289 1 3004 191 17 54 chr11 118159903 118160177 -32623376 - L1 LINE L1 -3688 3160 2877 1554 167 6 87 chr11 118160234 118160545 -32623008 - AluJo SINE Alu -26 286 1 1883 118 0 3 chr11 118160546 118160834 -32622719 - L1 LINE L1 -3957 2892 2606 436 281 171 0 chr11 118160836 118160982 -32622571 + MLT1H LTR MaLR 61 231 -318 15145 216 12 9 chr11 118160983 118164699 -32618854 - L1PB1 LINE L1 -13 6374 2159 2256 114 0 10 chr11 118164699 118165006 -32618547 - AluSx SINE Alu -8 304 1 15145 216 12 9 chr11 118165006 118165802 -32617751 - L1PB1 LINE L1 -4228 2159 1367 3213 102 35 190 chr11 118165805 118166844 -32616709 + LTR12 LTR ERV1 1 713 -1 5321 146 28 3 chr11 118166844 118167750 -32615803 - L1PBa LINE L1 -4604 2259 1332 4306 203 93 14 chr11 118167767 118168840 -32614713 - L1PBa LINE L1 -5700 1163 6 1199 175 0 5 chr11 118168854 118169054 -32614499 - MSTA LTR MaLR -225 203 5 336 221 0 23 chr11 118169055 118169141 -32614412 + MLT1H LTR MaLR 208 291 -258 643 186 59 0 chr11 118169188 118169306 -32614247 + MLT1H LTR MaLR 424 548 -1 213 346 170 6 chr11 118169338 118169497 -32614056 - MIR SINE MIR -25 237 53 2133 130 0 13 chr11 118169508 118169809 -32613744 + AluSx SINE Alu 1 297 -15 2165 131 0 16 chr11 118170981 118171295 -32612258 - AluSx SINE Alu -3 309 1 2124 91 7 3 chr11 118171563 118171849 -32611704 - AluSg SINE Alu -11 299 13 1757 175 0 3 chr11 118171913 118172210 -32611343 - AluJb SINE Alu -16 296 1 780 231 0 0 chr11 118172347 118172481 -32611072 - AluJo SINE Alu -177 135 2 292 288 22 29 chr11 118172488 118172627 -32610926 + L1M4 LINE L1 4265 4402 -1744 2064 103 3 52 chr11 118172660 118172970 -32610583 + AluSx SINE Alu 1 295 -17 379 301 184 28 chr11 118174085 118174411 -32609142 - L2 LINE L2 -1 3312 2936 2641 107 36 43 chr11 118174412 118174831 -32608722 + L1PA12 LINE L1 5752 6167 -1 226 335 12 36 chr11 118175110 118175358 -32608195 - L1M4 LINE L1 -969 5177 4936 2285 119 0 0 chr11 118175374 118175676 -32607877 + AluSx SINE Alu 3 304 -8 256 221 0 73 chr11 118175727 118175795 -32607758 - L1MC3 LINE L1 -1050 6735 6673 * 1416 210 90 125 chr11 118175791 118176024 -32607529 - L1MC4a LINE L1 -1211 6597 6357 3665 126 21 12 chr11 118176024 118176236 -32607317 + L1PA15 LINE L1 5592 5801 -364 4816 102 66 29 chr11 118176236 118176993 -32606560 + LTR1 LTR ERV1 1 785 0 3665 126 21 12 chr11 118176993 118177344 -32606209 + L1PA15 LINE L1 5801 6160 -5 1416 210 90 125 chr11 118177344 118177583 -32605970 - L1MC4a LINE L1 -1451 6357 6111 2006 128 7 10 chr11 118177583 118177880 -32605673 - AluSx SINE Alu -16 296 1 1416 210 90 125 chr11 118177880 118178183 -32605370 - L1MC4a LINE L1 -1697 6111 5848 337 268 149 36 chr11 118178408 118178576 -32604977 - HAL1b LINE L1 -498 850 664 763 204 0 8 chr11 118178668 118178800 -32604753 + FLAM_A SINE Alu 1 131 -2 308 259 12 24 chr11 118179330 118179415 -32604138 - MIR3 SINE MIR -3 205 122 512 123 41 0 chr11 118179506 118179579 -32603974 + AluJ/FLAM SINE Alu 2 77 -235 1692 186 6 6 chr11 118179681 118179993 -32603560 - AluJo SINE Alu 0 312 1 21 0 0 0 chr11 118180132 118180153 -32603400 + AT_rich Low_complexity Low_complexity 1 21 0 309 214 60 52 chr11 118180404 118180716 -32602837 - L1M2 LINE L1 -752 5403 5192 5595 104 7 26 chr11 118180719 118180959 -32602594 - L1MA2 LINE L1 0 6304 6061 2319 116 3 0 chr11 118180959 118181270 -32602283 - AluSx SINE Alu 0 312 1 5595 104 7 26 chr11 118181270 118181871 -32601682 - L1MA2 LINE L1 -243 6061 5479 182 250 154 0 chr11 118182242 118182294 -32601259 + MIR SINE MIR 118 177 -85 318 260 40 40 chr11 118182363 118182463 -32601090 + MIR3 SINE MIR 108 207 -1 286 333 0 0 chr11 118182583 118182673 -32600880 + CT-rich Low_complexity Low_complexity 3 92 0 298 302 43 29 chr11 118182846 118182985 -32600568 + L2 LINE L2 3173 3313 0 441 210 80 0 chr11 118183294 118183394 -32600159 - L2 LINE L2 -4 3309 3202 2135 128 3 0 chr11 118184032 118184329 -32599224 - AluSq SINE Alu -15 298 1 2183 122 0 0 chr11 118184464 118184758 -32598795 + AluSq SINE Alu 1 294 -19 1499 313 31 27 chr11 118184772 118185357 -32598196 + L1PA16 LINE L1 788 1374 -6200 336 321 52 7 chr11 118185366 118185582 -32597971 + L1PA16 LINE L1 2085 2306 -5268 5737 257 33 38 chr11 118185836 118188274 -32595279 + L1PA16 LINE L1 2203 4628 -2956 7583 53 0 23 chr11 118188971 118190006 -32593547 + L1PA5 LINE L1 5141 6154 0 315 105 3 0 chr11 118190009 118190065 -32593488 + L1 LINE L1 2127 2183 -3963 216 186 0 0 chr11 118190862 118190921 -32592632 + (TA)n Simple_repeat Simple_repeat 2 60 0 10073 188 35 4 chr11 118191052 118193357 -32590196 + L1PA16 LINE L1 4600 6970 -634 2085 167 14 20 chr11 118193357 118193689 -32589864 + L1PA16 LINE L1 7252 7597 -7 2046 133 3 10 chr11 118193916 118194217 -32589336 - AluSx SINE Alu -13 299 1 861 259 256 16 chr11 118194238 118194628 -32588925 - HAL1 LINE L1 -1962 545 44 2247 119 49 32 chr11 118194628 118194997 -32588556 - THE1C LTR MaLR 0 375 1 861 259 256 16 chr11 118194997 118195031 -32588522 - HAL1 LINE L1 -2463 44 19 515 289 107 9 chr11 118195129 118195354 -32588199 + MIR SINE MIR 7 253 -9 447 314 64 20 chr11 118195416 118195620 -32587933 - L2 LINE L2 -21 3292 3080 398 230 60 20 chr11 118195771 118195871 -32587682 + MIR3 SINE MIR 86 189 -19 2130 127 0 7 chr11 118195931 118196230 -32587323 + AluSx SINE Alu 1 297 -15 24 53 0 0 chr11 118196572 118196610 -32586943 + AT_rich Low_complexity Low_complexity 1 38 0 228 67 0 0 chr11 118197061 118197091 -32586462 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 219 293 0 66 chr11 118197542 118197648 -32585905 + MIR SINE MIR 92 190 -72 21 57 0 0 chr11 118197840 118197875 -32585678 + AT_rich Low_complexity Low_complexity 1 35 0 2276 119 3 0 chr11 118198232 118198535 -32585018 + AluSp SINE Alu 1 304 -9 25 0 0 0 chr11 118198580 118198605 -32584948 + AT_rich Low_complexity Low_complexity 1 25 0 1737 135 43 21 chr11 118198742 118199024 -32584529 - AluSx SINE Alu -24 288 1 330 87 0 0 chr11 118199052 118199098 -32584455 + MADE1 DNA Mariner 35 80 0 373 278 57 19 chr11 118199560 118199769 -32583784 + L1MEd LINE L1 891 1107 -5012 379 362 8 4 chr11 118199791 118200026 -32583527 + HAL1 LINE L1 1433 1668 -839 1002 293 111 56 chr11 118200420 118201329 -32582224 + L1MEd LINE L1 2193 3151 -2978 2178 104 0 3 chr11 118201348 118201637 -32581916 + AluSx SINE Alu 1 288 -24 191 61 30 0 chr11 118201640 118201673 -32581880 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2027 217 110 97 chr11 118201736 118202868 -32580685 + L1MC5 LINE L1 6643 7789 -172 246 156 0 0 chr11 118202875 118202920 -32580633 + GA-rich Low_complexity Low_complexity 4 48 0 262 256 55 79 chr11 118203079 118203333 -32580220 + L1MEd LINE L1 3309 3556 -2573 2102 102 11 97 chr11 118203342 118203849 -32579704 + Tigger2 DNA MER2_type 1 2718 0 309 363 138 27 chr11 118204494 118204827 -32578726 - L2 LINE L2 -4 3268 2899 3371 132 45 0 chr11 118205041 118205534 -32578019 + MLT2B2 LTR ERVL 1 515 0 2379 106 0 3 chr11 118205910 118206222 -32577331 - AluSq SINE Alu -2 311 1 844 188 0 0 chr11 118206229 118206362 -32577191 - FLAM_A SINE Alu 0 133 1 1026 284 65 29 chr11 118207816 118208264 -32575289 + LTR16B LTR ERVL 1 464 0 2089 122 3 30 chr11 118208328 118208632 -32574921 - AluSx SINE Alu -16 296 1 222 37 0 0 chr11 118209186 118209213 -32574340 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2266 85 0 0 chr11 118209216 118209497 -32574056 - AluSx SINE Alu -31 281 1 353 329 56 7 chr11 118209500 118209643 -32573910 + L2 LINE L2 2562 2711 -603 333 263 183 7 chr11 118209678 118209815 -32573738 - MIR SINE MIR -44 218 58 1692 193 55 6 chr11 118210143 118210469 -32573084 - MLT1A1 LTR MaLR -23 342 1 1489 180 35 0 chr11 118210621 118210905 -32572648 - L1MB3 LINE L1 0 6183 5890 190 277 119 38 chr11 118210933 118211092 -32572461 + L2 LINE L2 2800 2971 -343 1238 233 27 27 chr11 118211503 118211795 -32571758 + AluJo SINE Alu 1 292 -10 2211 95 7 3 chr11 118211909 118212205 -32571348 - AluSx SINE Alu -15 297 1 360 0 0 0 chr11 118212863 118212903 -32570650 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 2176 111 0 0 chr11 118212903 118213183 -32570370 - AluSx SINE Alu -32 280 1 944 147 0 0 chr11 118213308 118213451 -32570102 - AluJ SINE Alu -5 307 165 669 128 0 0 chr11 118213451 118213545 -32570008 - AluJ SINE Alu -205 107 14 624 201 6 169 chr11 118213766 118213855 -32569698 - MIR SINE MIR 0 262 160 2587 52 0 7 chr11 118213855 118214161 -32569392 - AluY SINE Alu -7 304 1 624 201 6 169 chr11 118214161 118214181 -32569372 - MIR SINE MIR -102 160 138 2140 91 22 0 chr11 118214181 118214496 -32569057 - AluSx SINE Alu 0 321 1 624 201 6 169 chr11 118214496 118214696 -32568857 - MIR SINE MIR -124 138 1 213 39 0 0 chr11 118214927 118214953 -32568600 + (TA)n Simple_repeat Simple_repeat 2 27 0 207 0 0 0 chr11 118214953 118214976 -32568577 + (T)n Simple_repeat Simple_repeat 1 23 0 2755 23 0 7 chr11 118215113 118215422 -32568131 - AluY SINE Alu -4 307 1 593 150 268 8 chr11 118215838 118215965 -32567588 - AluSg/x SINE Alu -19 291 132 2415 78 0 13 chr11 118215966 118216272 -32567281 - AluSq SINE Alu -11 302 1 1747 169 10 29 chr11 118216463 118216771 -32566782 - AluJo SINE Alu -10 302 1 536 197 109 0 chr11 118216801 118216938 -32566615 + MER103 DNA DNA 13 164 -2 2124 113 13 7 chr11 118216965 118217267 -32566286 + AluSx SINE Alu 6 309 -3 1070 183 24 123 chr11 118217298 118217632 -32565921 + MLT1A1 LTR MaLR 1 301 -64 1076 97 0 26 chr11 118217737 118217891 -32565662 + AluSg/x SINE Alu 152 301 -9 825 152 86 86 chr11 118218597 118218770 -32564783 + MER20 DNA MER1_type 1 176 -43 2106 119 27 0 chr11 118218770 118219063 -32564490 + AluSq SINE Alu 1 301 -12 825 152 86 86 chr11 118219063 118219099 -32564454 + MER20 DNA MER1_type 175 210 -9 949 176 111 35 chr11 118219101 118219216 -32564337 + AluSq SINE Alu 5 110 -203 2280 80 7 7 chr11 118219216 118219540 -32564013 + AluSp SINE Alu 1 324 0 949 176 111 35 chr11 118219540 118219621 -32563932 + AluSq SINE Alu 110 218 -95 1004 94 13 81 chr11 118220143 118220377 -32563176 - AluSg/x SINE Alu -30 282 65 1976 150 0 3 chr11 118221361 118221661 -32561892 + AluSx SINE Alu 1 299 -13 2265 89 6 43 chr11 118221769 118222093 -32561460 - AluSx SINE Alu 0 312 1 360 151 0 0 chr11 118222093 118222146 -32561407 - MSTC LTR MaLR -375 53 1 1744 166 115 95 chr11 118222177 118222465 -32561088 - L1MC5 LINE L1 -722 7239 6958 2184 111 3 0 chr11 118222465 118222762 -32560791 - AluSg SINE Alu -12 298 1 1744 166 115 95 chr11 118222762 118222994 -32560559 - L1MC5 LINE L1 -1003 6958 6724 1964 143 7 7 chr11 118222994 118223153 -32560400 - AluSx SINE Alu -18 294 133 2299 94 0 3 chr11 118223153 118223451 -32560102 - AluSx SINE Alu -15 297 1 1964 143 7 7 chr11 118223451 118223585 -32559968 - AluSx SINE Alu -178 134 1 1744 166 115 95 chr11 118223585 118223738 -32559815 - L1MC5 LINE L1 -1237 6724 6576 229 256 22 11 chr11 118223834 118223924 -32559629 + (TA)n Simple_repeat Simple_repeat 2 92 0 316 271 162 62 chr11 118223969 118224308 -32559245 - L1MC4a LINE L1 -1336 6472 6100 2072 126 33 0 chr11 118224374 118224676 -32558877 + AluSx SINE Alu 1 312 0 886 133 71 61 chr11 118225424 118225502 -32558051 + L1PB1 LINE L1 5951 6027 -124 2243 81 0 10 chr11 118225502 118225798 -32557755 + AluSc SINE Alu 1 293 -16 886 133 71 61 chr11 118225798 118225915 -32557638 + L1PB1 LINE L1 6027 6148 -3 21 36 0 0 chr11 118226012 118226040 -32557513 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr11 118226297 118226325 -32557228 + AT_rich Low_complexity Low_complexity 1 28 0 2189 102 7 3 chr11 118226599 118226893 -32556660 + AluSx SINE Alu 1 295 -17 2207 104 0 7 chr11 118227007 118227304 -32556249 + AluSx SINE Alu 1 295 -17 1421 205 15 22 chr11 118227436 118227567 -32555986 + AluJb SINE Alu 3 133 -179 2372 95 10 0 chr11 118227567 118227862 -32555691 + AluSp SINE Alu 1 298 -15 1421 205 15 22 chr11 118227862 118227998 -32555555 + AluJb SINE Alu 133 268 -44 1452 143 9 9 chr11 118228089 118228313 -32555240 - AluJb SINE Alu -30 282 59 440 188 5 97 chr11 118228363 118228420 -32555133 + MLT1I LTR MaLR 298 313 -96 1859 171 11 0 chr11 118228420 118228707 -32554846 - AluJo SINE Alu -22 290 1 440 188 5 97 chr11 118228707 118228796 -32554757 + MLT1I LTR MaLR 313 409 0 250 286 50 36 chr11 118228797 118228937 -32554616 + MIR SINE MIR 117 258 -4 193 319 11 33 chr11 118228940 118229031 -32554522 - MIR SINE MIR -148 114 26 1083 220 44 4 chr11 118229615 118229842 -32553711 - MLT1A1 LTR MaLR 0 365 130 2194 92 7 3 chr11 118230101 118230404 -32553149 + AluSp SINE Alu 1 304 0 205 316 32 32 chr11 118231022 118231117 -32552436 + MIR SINE MIR 32 126 -82 2328 109 0 0 chr11 118231118 118231430 -32552123 - AluSx SINE Alu 0 312 1 709 214 69 12 chr11 118231470 118231643 -32551910 - L1M4 LINE L1 -1187 4959 4777 1056 239 40 55 chr11 118231644 118231971 -32551582 - PABL_B LTR ERV1 0 667 346 469 295 55 20 chr11 118231977 118232177 -32551376 - PABL_B LTR ERV1 -460 207 1 34 0 0 0 chr11 118232218 118232252 -32551301 + AT_rich Low_complexity Low_complexity 1 34 0 259 204 19 111 chr11 118232252 118232282 -32551271 - L1MA6 LINE L1 -25 6275 6246 1393 138 0 0 chr11 118232282 118232485 -32551068 - L1PB4 LINE L1 -26 6130 5928 628 130 0 0 chr11 118232922 118233014 -32550539 - AluJ/FLAM SINE Alu -210 102 11 2342 88 7 0 chr11 118233022 118233344 -32550209 - AluSp SINE Alu 0 324 1 2292 80 0 67 chr11 118233444 118233771 -32549782 - AluY SINE Alu -6 305 1 2804 140 19 20 chr11 118234034 118234177 -32549376 - MER50 LTR ERV1 -28 706 564 1853 132 10 45 chr11 118234177 118234487 -32549066 + AluSx SINE Alu 1 299 -13 2804 140 19 20 chr11 118234487 118235004 -32548549 - MER50 LTR ERV1 -170 564 1 396 164 78 43 chr11 118235029 118235145 -32548408 + Charlie5 DNA MER1_type 4 90 -2522 2229 93 7 7 chr11 118235581 118235883 -32547670 + AluSx SINE Alu 1 302 -10 1617 159 7 51 chr11 118236132 118236460 -32547093 - AluJo SINE Alu 0 315 1 336 274 44 9 chr11 118236505 118236618 -32546935 - MER5B DNA MER1_type -58 120 4 261 313 25 0 chr11 118236674 118236754 -32546799 + MIR3 SINE MIR 91 172 -36 1944 139 33 33 chr11 118236819 118237134 -32546419 + MER21-int LTR ERV1 3144 3461 -730 4556 102 45 19 chr11 118237134 118237642 -32545911 - LTR8 LTR ERV1 0 691 160 2102 131 3 7 chr11 118237642 118237947 -32545606 - AluSx SINE Alu -8 304 1 4556 102 45 19 chr11 118237947 118238112 -32545441 - LTR8 LTR ERV1 -531 160 1 1944 139 33 33 chr11 118238112 118238128 -32545425 + MER21-int LTR ERV1 3460 3475 -716 2366 85 0 3 chr11 118238132 118238427 -32545126 - AluY SINE Alu -17 294 1 2158 112 0 29 chr11 118238476 118238788 -32544765 - AluY SINE Alu 0 311 9 2057 143 13 0 chr11 118238807 118238985 -32544568 - AluSx SINE Alu 0 312 127 2065 98 0 11 chr11 118238985 118239259 -32544294 - AluSc SINE Alu -6 303 33 2057 143 13 0 chr11 118239259 118239387 -32544166 - AluSx SINE Alu -185 127 2 2382 81 7 3 chr11 118239412 118239709 -32543844 - AluY SINE Alu -13 298 1 2037 109 7 11 chr11 118240162 118240465 -32543088 - AluSq SINE Alu 0 302 1 1948 159 0 0 chr11 118240520 118240810 -32542743 - AluJb SINE Alu -18 294 5 24 0 0 0 chr11 118240980 118241004 -32542549 + AT_rich Low_complexity Low_complexity 1 24 0 299 261 35 6 chr11 118241983 118242113 -32541440 - L1MC/D LINE L1 -734 5430 5333 2083 114 0 7 chr11 118242379 118242660 -32540893 + AluSx SINE Alu 1 279 -33 267 31 0 0 chr11 118242662 118242694 -32540859 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 249 159 0 0 chr11 118242802 118242846 -32540707 + T-rich Low_complexity Low_complexity 2 45 0 248 270 5 19 chr11 118243087 118243189 -32540364 - MLT1L LTR MaLR -340 275 183 370 237 59 68 chr11 118243259 118243495 -32540058 + L1ME4a LINE L1 5782 6015 -106 1735 159 0 18 chr11 118243527 118243810 -32539743 + AluJo SINE Alu 29 306 -6 380 335 56 28 chr11 118244314 118244636 -32538917 - HERV16 LTR ERVL -4360 636 306 225 188 229 10 chr11 118244770 118244866 -32538687 + L1 LINE L1 4903 5019 -1127 23 0 0 0 chr11 118244987 118245010 -32538543 + AT_rich Low_complexity Low_complexity 1 23 0 255 103 0 0 chr11 118245077 118245116 -32538437 + (TG)n Simple_repeat Simple_repeat 2 40 0 344 256 132 40 chr11 118245392 118245642 -32537911 + L1ME4a LINE L1 5709 5981 -140 26 74 0 0 chr11 118247072 118247126 -32536427 + AT_rich Low_complexity Low_complexity 1 54 0 664 167 0 18 chr11 118247372 118247486 -32536067 + FLAM_A SINE Alu 23 134 -8 227 342 58 13 chr11 118247659 118247814 -32535739 - L2 LINE L2 -245 3027 2866 185 288 59 65 chr11 118247910 118248063 -32535490 + MIR SINE MIR 49 200 -62 * 517 281 7 7 chr11 118248049 118248188 -32535365 - L2 LINE L2 0 3272 3134 251 313 68 28 chr11 118248464 118248640 -32534913 - L2 LINE L2 -401 2913 2731 427 249 89 89 chr11 118248745 118249070 -32534483 + MLT1K LTR MaLR 200 524 -64 963 108 0 0 chr11 118249417 118249546 -32534007 - MER72 LTR ERV1 -9 713 585 8710 167 75 86 chr11 118249546 118251686 -32531867 - MER83B-int LTR ERV1 -1318 5440 432 1522 127 131 22 chr11 118251687 118251962 -32531591 - LTR9 LTR ERV1 -307 305 1 2144 139 26 13 chr11 118251962 118252342 -32531211 - MER83B-int LTR ERV1 -3437 3321 2937 2039 175 67 36 chr11 118252400 118252845 -32530708 + LTR2B LTR ERV1 32 490 0 924 172 107 90 chr11 118252845 118252985 -32530568 - MER83B-int LTR ERV1 -2775 3556 3420 1410 167 140 12 chr11 118252985 118253242 -32530311 - AluJb SINE Alu -22 290 1 924 172 107 90 chr11 118253242 118253610 -32529943 - MER83B-int LTR ERV1 -2911 3420 1190 1887 201 39 37 chr11 118253645 118254053 -32529500 - LTR2 LTR ERV1 0 449 41 2012 204 66 79 chr11 118254145 118254289 -32529264 - MER83B-int LTR ERV1 -3556 2390 2246 2439 86 0 3 chr11 118254289 118254593 -32528960 - AluSg SINE Alu -7 303 1 2012 204 66 79 chr11 118254593 118255151 -32528402 - MER83B-int LTR ERV1 -3700 2246 1745 373 175 0 12 chr11 118255273 118255353 -32528200 - MER83B-int LTR ERV1 -2963 1917 1839 350 278 0 0 chr11 118255354 118255426 -32528127 - tRNA-Glu-GAG tRNA tRNA -1 74 3 848 162 7 7 chr11 118255428 118255582 -32527971 - MER83B-int LTR ERV1 -5124 1207 1054 1839 91 34 38 chr11 118255588 118255851 -32527702 + AluSg SINE Alu 1 262 -48 4568 139 18 6 chr11 118256433 118257146 -32526407 - MER72 LTR ERV1 0 722 1 23 0 0 0 chr11 118257772 118257795 -32525758 + AT_rich Low_complexity Low_complexity 1 23 0 238 204 230 80 chr11 118259288 118259316 -32524237 + L2 LINE L2 2925 2947 -366 1289 244 143 18 chr11 118259316 118259763 -32523790 + MLT1D LTR MaLR 1 503 -2 238 204 230 80 chr11 118259763 118259847 -32523706 + L2 LINE L2 2947 3054 -259 247 216 155 52 chr11 118260507 118260604 -32522949 + L2 LINE L2 3158 3264 -49 2144 90 4 0 chr11 118260662 118260958 -32522595 + AluSx SINE Alu 15 311 0 289 0 49 0 chr11 118261192 118261233 -32522320 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 27 29 0 0 chr11 118266218 118266252 -32517301 + AT_rich Low_complexity Low_complexity 1 34 0 2239 108 0 10 chr11 118266323 118266619 -32516934 - AluSq SINE Alu -20 293 1 2436 64 13 35 chr11 118266760 118267072 -32516481 - AluSp SINE Alu -8 305 1 2398 100 3 0 chr11 118267096 118267405 -32516148 - AluSq SINE Alu -3 310 1 455 300 27 10 chr11 118268150 118268324 -32515229 + MIR3 SINE MIR 8 180 -62 23 74 0 0 chr11 118270604 118270631 -32512922 + GC_rich Low_complexity Low_complexity 1 27 0 243 225 39 139 chr11 118271601 118271730 -32511823 + MIR SINE MIR 82 197 -65 2438 166 5 35 chr11 118271738 118272160 -32511393 - LTR3 LTR ERVK -2 430 22 2320 88 0 0 chr11 118272249 118272544 -32511009 + AluSq SINE Alu 1 295 -18 336 210 63 77 chr11 118274278 118274421 -32509132 - MIR SINE MIR -46 216 76 21 57 0 0 chr11 118274483 118274518 -32509035 + AT_rich Low_complexity Low_complexity 1 35 0 2214 96 0 56 chr11 118276530 118276854 -32506699 - AluSx SINE Alu -6 306 1 365 292 102 24 chr11 118277024 118277341 -32506212 - HAL1b LINE L1 -864 484 207 225 261 0 43 chr11 118277569 118277638 -32505915 + MLT1J LTR MaLR 110 175 -336 283 200 138 0 chr11 118277867 118277947 -32505606 + MLT1L LTR MaLR 518 608 -7 207 305 230 5 chr11 118278360 118278547 -32505006 - MIR SINE MIR 0 262 34 9174 42 2 1 chr11 118279221 118281096 -32502457 - L1PA5 LINE L1 0 6154 4278 339 210 0 0 chr11 118281628 118281690 -32501863 + MER20B DNA MER1_type 1 62 -721 493 214 150 0 chr11 118281690 118281863 -32501690 + MER20B DNA MER1_type 544 742 -41 1720 155 14 7 chr11 118281865 118282149 -32501404 + AluJo SINE Alu 3 288 -24 321 271 47 0 chr11 118282149 118282234 -32501319 + L1MC4 LINE L1 6615 6703 -1339 318 315 0 0 chr11 118282154 118282243 -32501310 - L1MC4 LINE L1 -1339 6703 6615 * 228 159 0 0 chr11 118282252 118282296 -32501257 + L1MC4 LINE L1 6652 6695 -1347 241 217 96 0 chr11 118282301 118282384 -32501169 + L1MC4 LINE L1 6615 6705 -1337 475 260 11 33 chr11 118282490 118282671 -32500882 - L1MC4 LINE L1 0 8042 7866 970 120 0 8 chr11 118282779 118282912 -32500641 - AluJb SINE Alu -180 132 1 1221 144 10 0 chr11 118282913 118283107 -32500446 - L1MC2 LINE L1 -175 6169 5974 1937 106 47 18 chr11 118283113 118283388 -32500165 - AluSx SINE Alu -10 302 20 688 259 65 30 chr11 118283396 118283628 -32499925 - Charlie7 DNA MER1_type -291 2321 2082 1814 178 3 0 chr11 118283628 118283926 -32499627 + AluJb SINE Alu 1 299 -13 2344 82 0 58 chr11 118284100 118284430 -32499123 - AluSq SINE Alu -2 311 1 1054 117 31 6 chr11 118284902 118285064 -32498489 - L1PA10 LINE L1 -5 6163 5998 628 173 8 60 chr11 118285066 118285199 -32498354 - FLAM_A SINE Alu -4 129 4 2056 140 3 13 chr11 118285387 118285702 -32497851 + AluSx SINE Alu 1 312 0 26 50 0 0 chr11 118286607 118286647 -32496906 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr11 118287878 118287900 -32495653 + AT_rich Low_complexity Low_complexity 1 22 0 2157 96 43 0 chr11 118287947 118288229 -32495324 - AluY SINE Alu -17 294 1 1596 151 3 60 chr11 118288575 118288860 -32494693 - AluJb SINE Alu -7 305 37 2225 127 0 0 chr11 118288929 118289228 -32494325 + AluSx SINE Alu 1 299 -13 2144 157 54 66 chr11 118289242 118289319 -32494234 - MSTB LTR MaLR 0 426 350 1797 160 3 28 chr11 118289319 118289606 -32493947 + AluJb SINE Alu 6 285 -27 2144 157 54 66 chr11 118289606 118289760 -32493793 - MSTB LTR MaLR -76 350 196 1996 119 28 7 chr11 118289760 118290046 -32493507 - AluSq SINE Alu -20 293 2 2144 157 54 66 chr11 118290046 118290240 -32493313 - MSTB LTR MaLR -230 196 5 642 242 163 6 chr11 118290578 118290756 -32492797 + MLT1G1 LTR MaLR 1 206 -389 1476 243 81 51 chr11 118290796 118290834 -32492719 + MER90 LTR ERV1 67 102 -512 1914 99 84 0 chr11 118290834 118291117 -32492436 - AluSx SINE Alu 0 305 1 1476 243 81 51 chr11 118291117 118291609 -32491944 + MER90 LTR ERV1 102 614 0 297 197 7 184 chr11 118291612 118291759 -32491794 + MLT1F LTR MaLR 173 293 -297 414 0 0 0 chr11 118291780 118291826 -32491727 + (GA)n Simple_repeat Simple_repeat 1 46 0 637 219 6 25 chr11 118291893 118292053 -32491500 + MLT1F LTR MaLR 382 538 -4 224 233 0 0 chr11 118292055 118292098 -32491455 + MIR SINE MIR 220 262 0 1961 130 0 11 chr11 118292446 118292751 -32490802 - AluSq SINE Alu 0 302 1 204 226 0 0 chr11 118292999 118293052 -32490501 + (TA)n Simple_repeat Simple_repeat 1 53 0 1020 193 154 29 chr11 118293159 118293439 -32490114 - MLT1D LTR MaLR 0 505 191 824 125 0 0 chr11 118293461 118293573 -32489980 - AluSg/x SINE Alu -30 282 171 874 173 75 106 chr11 118293578 118293657 -32489896 - MLT1D LTR MaLR -258 247 167 2049 128 0 4 chr11 118293657 118293938 -32489615 - AluSg SINE Alu -30 280 1 874 173 75 106 chr11 118293938 118294113 -32489440 - MLT1D LTR MaLR -338 167 1 2103 108 18 0 chr11 118294186 118294472 -32489081 + AluSc SINE Alu 4 294 -15 750 148 15 44 chr11 118294501 118294515 -32489038 - FLAM_C SINE Alu -171 131 118 201 39 0 0 chr11 118294515 118294541 -32489012 + (TG)n Simple_repeat Simple_repeat 2 27 0 750 148 15 44 chr11 118294541 118294661 -32488892 - FLAM_C SINE Alu -184 118 1 1691 140 86 10 chr11 118294734 118295048 -32488505 - MER44D DNA MER2_type -1 608 1 274 182 52 39 chr11 118295057 118295134 -32488419 - MER92B LTR ERV1 -3 633 556 532 191 73 101 chr11 118295178 118295356 -32488197 - MER92B LTR ERV1 -193 443 271 2271 107 7 7 chr11 118295375 118295714 -32487839 - AluSx SINE Alu 0 339 1 431 194 0 0 chr11 118295714 118295781 -32487772 - MER92B LTR ERV1 -569 67 1 2364 85 10 0 chr11 118296454 118296759 -32486794 - AluSx SINE Alu -4 308 1 542 274 65 0 chr11 118298108 118298276 -32485277 - MIR SINE MIR 0 262 84 219 163 102 0 chr11 118298632 118298681 -32484872 + MIR SINE MIR 77 130 -132 551 161 18 0 chr11 118298681 118298793 -32484760 + CT-rich Low_complexity Low_complexity 1 114 0 213 39 0 0 chr11 118298818 118298844 -32484709 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 238 154 0 0 chr11 118298876 118298915 -32484638 + MIR SINE MIR 90 128 -134 276 100 0 0 chr11 118298915 118298955 -32484598 + (TTCC)n Simple_repeat Simple_repeat 2 41 0 208 174 109 0 chr11 118298956 118299002 -32484551 + MIR SINE MIR 80 130 -132 225 65 0 0 chr11 118299010 118299041 -32484512 + (TTCC)n Simple_repeat Simple_repeat 4 34 0 244 150 0 0 chr11 118299087 118299127 -32484426 + MIR SINE MIR 90 129 -133 440 97 0 14 chr11 118299138 118299210 -32484343 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 213 39 0 0 chr11 118299237 118299263 -32484290 + (TCCC)n Simple_repeat Simple_repeat 4 29 0 238 154 0 0 chr11 118299264 118299303 -32484250 + MIR SINE MIR 90 128 -134 186 43 0 0 chr11 118299313 118299336 -32484217 + (TCCC)n Simple_repeat Simple_repeat 2 24 0 1914 138 0 7 chr11 118299368 118299650 -32483903 - AluSx SINE Alu -32 280 1 406 231 97 0 chr11 118299650 118299784 -32483769 + MIR SINE MIR 114 260 -2 2304 108 26 0 chr11 118299927 118300232 -32483321 - AluSq SINE Alu 0 313 1 2291 82 7 0 chr11 118300400 118300692 -32482861 - AluSp SINE Alu -19 294 1 198 71 0 0 chr11 118300761 118300789 -32482764 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 263 204 0 0 chr11 118301413 118301462 -32482091 - L2 LINE L2 -2 3311 3263 1787 153 7 11 chr11 118301605 118301913 -32481640 - AluJb SINE Alu 0 309 3 755 196 7 29 chr11 118301990 118302128 -32481425 - AluJo SINE Alu -176 136 2 25 0 0 0 chr11 118302196 118302221 -32481332 + AT_rich Low_complexity Low_complexity 1 25 0 2724 26 0 10 chr11 118302316 118302629 -32480924 - AluY SINE Alu -1 310 1 1489 133 126 41 chr11 118303045 118303172 -32480381 - AluSx SINE Alu -19 293 178 2277 102 0 16 chr11 118303172 118303477 -32480076 - AluSx SINE Alu -12 300 1 2283 116 0 3 chr11 118303484 118303795 -32479758 - AluSg SINE Alu 0 310 1 1489 133 126 41 chr11 118303795 118303929 -32479624 - AluSx SINE Alu -139 173 1 2128 113 0 52 chr11 118304565 118304777 -32478776 - AluSq SINE Alu 0 313 122 2431 92 0 0 chr11 118304777 118305082 -32478471 - AluSg SINE Alu -5 305 1 2128 113 0 52 chr11 118305082 118305195 -32478358 - AluSq SINE Alu -191 122 5 825 152 86 86 chr11 118305197 118305233 -32478320 - MER20 DNA MER1_type -9 210 175 2080 116 31 0 chr11 118305233 118305525 -32478028 - AluSq SINE Alu -12 301 1 825 152 86 86 chr11 118305525 118305698 -32477855 - MER20 DNA MER1_type -43 176 1 2429 96 0 0 chr11 118306404 118306707 -32476846 - AluSx SINE Alu -9 303 1 353 329 56 7 chr11 118306710 118306853 -32476700 + L2 LINE L2 2562 2711 -603 333 263 183 7 chr11 118306888 118307025 -32476528 - MIR SINE MIR -44 218 58 1692 193 55 6 chr11 118307353 118307679 -32475874 - MLT1A1 LTR MaLR -23 342 1 1489 180 35 0 chr11 118307831 118308115 -32475438 - L1MB3 LINE L1 0 6183 5890 190 277 119 38 chr11 118308143 118308302 -32475251 + L2 LINE L2 2800 2971 -343 1238 233 27 27 chr11 118308713 118309005 -32474548 + AluJo SINE Alu 1 292 -10 2255 95 7 0 chr11 118309119 118309415 -32474138 - AluSx SINE Alu -14 298 1 360 0 0 0 chr11 118310073 118310113 -32473440 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 2176 111 0 0 chr11 118310113 118310393 -32473160 - AluSx SINE Alu -32 280 1 944 147 0 0 chr11 118310518 118310661 -32472892 - AluJ SINE Alu -5 307 165 669 128 0 0 chr11 118310661 118310755 -32472798 - AluJ SINE Alu -205 107 14 624 201 6 169 chr11 118310976 118311065 -32472488 - MIR SINE MIR 0 262 160 2599 52 0 7 chr11 118311065 118311371 -32472182 - AluY SINE Alu -7 304 1 624 201 6 169 chr11 118311371 118311391 -32472162 - MIR SINE MIR -102 160 138 2140 91 22 0 chr11 118311391 118311706 -32471847 - AluSx SINE Alu 0 321 1 624 201 6 169 chr11 118311706 118311906 -32471647 - MIR SINE MIR -124 138 1 249 33 0 0 chr11 118312137 118312167 -32471386 + (TA)n Simple_repeat Simple_repeat 2 31 0 1767 153 43 13 chr11 118312167 118312467 -32471086 - AluJo SINE Alu -3 309 1 2115 89 64 0 chr11 118312475 118312755 -32470798 - AluSp SINE Alu -15 298 1 1001 223 37 121 chr11 118312941 118313357 -32470196 - L1ME3A LINE L1 -234 5936 5487 1036 175 24 127 chr11 118313357 118313689 -32469864 + AluJo SINE Alu 2 299 -3 1001 223 37 121 chr11 118313689 118313762 -32469791 - L1ME3A LINE L1 -683 5487 5409 1850 118 33 85 chr11 118313762 118313954 -32469599 - AluSx SINE Alu 0 312 142 2051 96 0 11 chr11 118313954 118314224 -32469329 - AluSg SINE Alu 0 310 44 1850 118 33 85 chr11 118314224 118314360 -32469193 - AluSx SINE Alu -170 142 1 1001 223 37 121 chr11 118314360 118314471 -32469082 - L1ME3A LINE L1 -761 5409 5372 2125 128 14 0 chr11 118314471 118314767 -32468786 - AluSx SINE Alu -12 300 1 1001 223 37 121 chr11 118314767 118314801 -32468752 - L1ME3A LINE L1 -798 5372 5337 2267 99 3 0 chr11 118316095 118316387 -32467166 + AluSp SINE Alu 1 293 -20 2065 153 0 0 chr11 118316569 118316869 -32466684 - AluSx SINE Alu -12 300 1 189 240 33 74 chr11 118316986 118317107 -32466446 + MIR SINE MIR 72 187 -75 2159 116 0 16 chr11 118317119 118317422 -32466131 + AluSx SINE Alu 1 298 -14 825 152 86 86 chr11 118318128 118318301 -32465252 + MER20 DNA MER1_type 1 176 -43 2080 116 31 0 chr11 118318301 118318593 -32464960 + AluSq SINE Alu 1 301 -12 825 152 86 86 chr11 118318593 118318629 -32464924 + MER20 DNA MER1_type 175 210 -9 2122 113 0 55 chr11 118318631 118318744 -32464809 + AluSq SINE Alu 5 123 -190 2397 95 0 0 chr11 118318744 118319048 -32464505 + AluSg SINE Alu 1 304 -6 2122 113 0 55 chr11 118319048 118319261 -32464292 + AluSq SINE Alu 123 313 0 1399 126 119 91 chr11 118319898 118320032 -32463521 + AluSx SINE Alu 1 130 -182 2261 108 0 3 chr11 118320032 118320328 -32463225 + AluSg SINE Alu 1 295 -15 1399 126 119 91 chr11 118320328 118320350 -32463203 + AluSx SINE Alu 130 150 -162 1985 117 0 29 chr11 118320350 118320659 -32462894 + AluSx SINE Alu 1 300 -12 1399 126 119 91 chr11 118320659 118320786 -32462767 + AluSx SINE Alu 150 293 -19 2715 20 0 7 chr11 118321202 118321504 -32462049 + AluY SINE Alu 1 300 -11 1930 145 0 10 chr11 118322122 118322418 -32461135 - AluSp SINE Alu -20 293 1 1350 201 115 12 chr11 118322419 118322818 -32460735 + Charlie1b DNA MER1_type 70 509 -14 301 272 21 102 chr11 118323016 118323166 -32460387 + MIR SINE MIR 8 148 -60 2300 113 3 0 chr11 118323170 118323479 -32460074 + AluSx SINE Alu 2 311 -1 216 0 0 0 chr11 118324988 118325012 -32458541 + (CA)n Simple_repeat Simple_repeat 2 25 0 2316 85 0 38 chr11 118325031 118325347 -32458206 - AluSg SINE Alu -6 304 1 243 125 25 0 chr11 118326422 118326462 -32457091 - MADE1 DNA Mariner -39 41 1 315 85 0 0 chr11 118326860 118326907 -32456646 + (TG)n Simple_repeat Simple_repeat 2 48 0 1547 120 136 8 chr11 118326907 118327157 -32456396 - AluSg SINE Alu -28 282 1 1111 88 0 7 chr11 118327157 118327294 -32456259 - AluSq/x SINE Alu -177 136 1 609 253 60 0 chr11 118328176 118328358 -32455195 - MIR SINE MIR 0 262 70 1597 156 3 59 chr11 118328364 118328671 -32454882 + AluJb SINE Alu 1 290 -22 2247 115 0 6 chr11 118328776 118329089 -32454464 - AluSx SINE Alu -1 311 1 384 301 72 7 chr11 118329140 118329293 -32454260 - L2 LINE L2 0 3272 3110 225 319 139 14 chr11 118330214 118330358 -32453195 + MIR3 SINE MIR 40 201 -7 2338 101 0 0 chr11 118330416 118330722 -32452831 + AluSq SINE Alu 1 306 -7 983 189 120 4 chr11 118330840 118331073 -32452480 + MIR SINE MIR 2 261 -1 2032 123 0 32 chr11 118331330 118331639 -32451914 - AluSx SINE Alu -13 299 1 206 370 50 0 chr11 118331654 118331754 -32451799 + MIR SINE MIR 3 107 -155 1741 179 144 44 chr11 118332203 118332662 -32450891 - MLT1D LTR MaLR 0 505 1 250 326 89 52 chr11 118332987 118333257 -32450296 + L2 LINE L2 2911 3190 -82 1601 161 27 4 chr11 118333348 118333609 -32449944 + AluJb SINE Alu 38 304 -8 2332 95 3 0 chr11 118334378 118334674 -32448879 - AluSq SINE Alu -16 297 1 2281 165 16 149 chr11 118334727 118335371 -32448182 + LTR6A LTR ERV1 1 564 0 2237 107 3 3 chr11 118335505 118335803 -32447750 - AluSc SINE Alu -11 298 1 183 189 0 0 chr11 118335803 118335840 -32447713 + MIR SINE MIR 103 139 -69 1812 178 0 13 chr11 118336218 118336522 -32447031 - AluJb SINE Alu -12 300 1 1046 198 0 20 chr11 118337518 118337715 -32445838 + AluJo SINE Alu 1 193 -119 2458 84 3 0 chr11 118338430 118338740 -32444813 - AluY SINE Alu 0 311 1 1309 241 26 61 chr11 118338751 118338928 -32444625 - Charlie4a DNA MER1_type -1517 444 262 745 156 0 30 chr11 118338928 118339063 -32444490 - FLAM_C SINE Alu 0 133 3 1309 241 26 61 chr11 118339063 118339342 -32444211 - Charlie4a DNA MER1_type -1699 262 4 727 222 63 11 chr11 118339404 118339593 -32443960 - MSTC LTR MaLR 0 428 230 2120 121 0 0 chr11 118339611 118339893 -32443660 - AluSx SINE Alu -16 296 15 2270 83 6 49 chr11 118339893 118340219 -32443334 - AluSx SINE Alu 0 312 1 360 151 0 0 chr11 118340219 118340272 -32443281 - MSTC LTR MaLR -375 53 1 1780 214 97 135 chr11 118340303 118340592 -32442961 - L1MC5 LINE L1 -722 7239 6941 2160 114 3 0 chr11 118340592 118340889 -32442664 - AluSg SINE Alu -12 298 1 1780 214 97 135 chr11 118340889 118341121 -32442432 - L1MC5 LINE L1 -1020 6941 6702 1964 143 7 7 chr11 118341121 118341280 -32442273 - AluSx SINE Alu -18 294 133 2331 97 0 0 chr11 118341280 118341578 -32441975 - AluSx SINE Alu -14 298 1 1964 143 7 7 chr11 118341578 118341712 -32441841 - AluSx SINE Alu -178 134 1 1780 214 97 135 chr11 118341712 118342501 -32441052 - L1MC5 LINE L1 -1259 6702 5968 1520 147 121 11 chr11 118342501 118342766 -32440787 + AluSg1 SINE Alu 1 294 -15 1780 214 97 135 chr11 118342766 118343108 -32440445 - L1MC5 LINE L1 -1993 5968 5614 478 176 136 119 chr11 118343306 118343375 -32440178 + MER5A DNA MER1_type 9 75 -114 2369 84 3 3 chr11 118343375 118343683 -32439870 + AluSg SINE Alu 1 308 -2 478 176 136 119 chr11 118343683 118343789 -32439764 + MER5A DNA MER1_type 75 187 -2 667 203 0 0 chr11 118343799 118343927 -32439626 - MER3 DNA MER1_type 0 209 82 712 247 30 0 chr11 118343987 118344153 -32439400 - MER3 DNA MER1_type 0 209 39 304 262 0 0 chr11 118344150 118344211 -32439342 - MER3 DNA MER1_type -100 109 49 * 2075 149 7 0 chr11 118345089 118345397 -32438156 - AluSx SINE Alu -2 310 1 398 320 47 29 chr11 118345802 118345974 -32437579 - MER5B DNA MER1_type -1 177 3 2017 115 31 17 chr11 118346800 118347088 -32436465 - AluSx SINE Alu -20 292 1 2302 108 0 0 chr11 118348074 118348370 -32435183 - AluSx SINE Alu -16 296 1 235 194 65 32 chr11 118348588 118348650 -32434903 + MIR SINE MIR 81 130 -78 236 98 0 24 chr11 118348709 118348750 -32434803 + (TCCC)n Simple_repeat Simple_repeat 4 43 0 2051 128 7 0 chr11 118348770 118349060 -32434493 - AluSx SINE Alu -10 302 11 285 272 70 9 chr11 118349114 118349228 -32434325 + MIR SINE MIR 66 186 -76 839 114 0 32 chr11 118350057 118350180 -32433373 - FLAM_C SINE Alu -19 124 6 560 262 59 25 chr11 118350275 118350477 -32433076 + L1ME3A LINE L1 5732 5940 -230 1572 170 4 0 chr11 118350647 118350894 -32432659 - AluSx SINE Alu -64 248 1 2366 97 3 3 chr11 118350908 118351245 -32432308 - AluSg SINE Alu 0 338 2 327 337 34 29 chr11 118351404 118351579 -32431974 - L2 LINE L2 -513 2801 2626 448 341 51 57 chr11 118351585 118351717 -32431836 + L2 LINE L2 1990 2121 -1193 2074 116 23 16 chr11 118351717 118352027 -32431526 - AluSx SINE Alu 0 312 1 448 341 51 57 chr11 118352027 118352387 -32431166 + L2 LINE L2 2121 2479 -835 1923 153 3 27 chr11 118352436 118352736 -32430817 + AluJb SINE Alu 1 293 -19 342 0 0 0 chr11 118352969 118353007 -32430546 + (TG)n Simple_repeat Simple_repeat 2 39 0 1845 146 0 32 chr11 118353418 118353755 -32429798 - AluJb SINE Alu 0 312 1 27 0 0 0 chr11 118353795 118353822 -32429731 + AT_rich Low_complexity Low_complexity 1 27 0 1762 141 74 0 chr11 118353937 118354206 -32429347 - AluSx SINE Alu -21 291 3 1076 110 0 0 chr11 118354207 118354343 -32429210 - AluJb SINE Alu -176 136 1 1221 144 10 0 chr11 118354344 118354538 -32429015 - L1MC2 LINE L1 -175 6169 5974 1937 106 47 18 chr11 118354544 118354819 -32428734 - AluSx SINE Alu -10 302 20 688 259 65 30 chr11 118354827 118355059 -32428494 - Charlie7 DNA MER1_type -291 2321 2082 1840 174 3 0 chr11 118355059 118355357 -32428196 + AluJb SINE Alu 1 299 -13 2344 82 0 58 chr11 118355531 118355861 -32427692 - AluSq SINE Alu -2 311 1 1054 117 31 6 chr11 118356333 118356495 -32427058 - L1PA10 LINE L1 -5 6163 5998 648 165 8 60 chr11 118356497 118356630 -32426923 - FLAM_A SINE Alu -4 129 4 2099 139 0 13 chr11 118356818 118357134 -32426419 + AluSx SINE Alu 1 312 0 26 50 0 0 chr11 118358039 118358079 -32425474 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr11 118359310 118359332 -32424221 + AT_rich Low_complexity Low_complexity 1 22 0 1254 117 0 0 chr11 118359379 118359541 -32424012 - AluSg/x SINE Alu -17 293 132 1433 122 148 61 chr11 118359541 118359819 -32423734 - AluSx SINE Alu -10 302 1 225 319 139 14 chr11 118359877 118360021 -32423532 - MIR3 SINE MIR -7 201 40 384 301 72 7 chr11 118360942 118361095 -32422458 + L2 LINE L2 3110 3272 0 2242 118 0 6 chr11 118361146 118361460 -32422093 + AluSx SINE Alu 1 312 0 1634 147 3 80 chr11 118361565 118361879 -32421674 - AluJb SINE Alu -22 290 1 609 253 60 0 chr11 118361885 118362067 -32421486 + MIR SINE MIR 70 262 0 1111 88 0 7 chr11 118362950 118363087 -32420466 + AluSq/x SINE Alu 1 136 -177 1501 128 136 8 chr11 118363087 118363337 -32420216 + AluSg SINE Alu 1 282 -28 315 85 0 0 chr11 118363337 118363384 -32420169 + (CA)n Simple_repeat Simple_repeat 2 48 0 243 125 25 0 chr11 118363782 118363822 -32419731 + MADE1 DNA Mariner 1 41 -39 2350 82 0 35 chr11 118364897 118365212 -32418341 + AluSg SINE Alu 1 304 -6 306 0 0 0 chr11 118365231 118365265 -32418288 + (TG)n Simple_repeat Simple_repeat 2 35 0 2300 113 3 0 chr11 118366775 118367084 -32416469 - AluSx SINE Alu -1 311 2 301 272 21 102 chr11 118367088 118367238 -32416315 - MIR SINE MIR -60 148 8 1434 207 105 54 chr11 118367435 118367834 -32415719 - Charlie1b DNA MER1_type -2252 509 79 2083 130 10 7 chr11 118367834 118368134 -32415419 + AluSx SINE Alu 1 301 -11 1434 207 105 54 chr11 118368134 118368218 -32415335 - Charlie1b DNA MER1_type -2682 79 1 1130 134 5 67 chr11 118368237 118368446 -32415107 + AluJb SINE Alu 86 281 -31 2514 78 0 0 chr11 118368848 118369156 -32414397 + AluY SINE Alu 1 308 -3 1860 98 108 4 chr11 118369176 118369453 -32414100 + AluSc SINE Alu 2 307 -2 2100 122 0 3 chr11 118369946 118370241 -32413312 - AluSx SINE Alu -18 294 1 2102 150 0 3 chr11 118370729 118371042 -32412511 + AluSx SINE Alu 1 312 0 285 275 29 0 chr11 118371122 118371191 -32412362 - L2 LINE L2 -9 3263 3193 799 141 8 16 chr11 118371494 118371622 -32411931 - FLAM_A SINE Alu -2 131 5 271 318 5 24 chr11 118371630 118371760 -32411793 + CT-rich Low_complexity Low_complexity 4 203 0 5613 130 135 18 chr11 118371849 118372060 -32411493 - L1MA4A LINE L1 -5 6298 6113 1837 162 0 14 chr11 118372060 118372350 -32411203 + AluJb SINE Alu 1 286 -26 5613 130 135 18 chr11 118372350 118372885 -32410668 - L1MA4A LINE L1 -190 6113 5642 2280 91 17 3 chr11 118372885 118373181 -32410372 - AluSx SINE Alu -12 300 1 5613 130 135 18 chr11 118373181 118374446 -32409107 - L1MA4A LINE L1 -661 5642 4023 2415 93 0 0 chr11 118374654 118374956 -32408597 + AluSg SINE Alu 1 302 -8 1901 140 0 3 chr11 118375815 118376134 -32407419 + AluJb SINE Alu 1 312 0 189 0 0 0 chr11 118376850 118376871 -32406682 + (T)n Simple_repeat Simple_repeat 1 21 0 1453 142 84 8 chr11 118377065 118377304 -32406249 - AluSx SINE Alu -55 257 1 831 156 0 22 chr11 118377306 118377441 -32406112 - AluJo/FLAM SINE Alu -180 132 1 1841 102 124 0 chr11 118378125 118378400 -32405153 - AluSx SINE Alu -3 309 1 265 105 0 0 chr11 118378961 118378999 -32404554 + AluJb SINE Alu 1 38 -263 5210 103 32 7 chr11 118378999 118379753 -32403800 - LTR17 LTR ERV1 -1 779 7 1727 150 29 0 chr11 118379754 118380028 -32403525 + AluJb SINE Alu 29 310 -2 1791 126 0 0 chr11 118380107 118380353 -32403200 - AluSg SINE Alu -64 246 1 818 204 82 0 chr11 118380604 118380751 -32402802 - MER21B LTR ERV1 -396 467 309 772 145 138 7 chr11 118380752 118380904 -32402649 - AluSg/x SINE Alu -19 290 119 1754 179 144 44 chr11 118381081 118381540 -32402013 - MLT1D LTR MaLR 0 505 1 250 326 89 52 chr11 118381869 118382139 -32401414 + L2 LINE L2 2911 3190 -82 1546 166 27 4 chr11 118382231 118382490 -32401063 + AluJb SINE Alu 38 302 -10 2332 95 3 0 chr11 118383259 118383555 -32399998 - AluSq SINE Alu -16 297 1 2283 155 19 152 chr11 118383608 118384252 -32399301 + LTR6A LTR ERV1 1 564 0 2278 106 0 7 chr11 118384386 118384689 -32398864 - AluSx SINE Alu -11 301 1 574 86 12 0 chr11 118384689 118384770 -32398783 - MLT1C LTR MaLR -385 82 1 219 331 117 32 chr11 118385221 118385355 -32398198 + L2 LINE L2 3099 3249 -23 1754 160 19 36 chr11 118385355 118385662 -32397891 - AluJo SINE Alu -10 302 1 219 331 117 32 chr11 118385662 118385681 -32397872 + L2 LINE L2 3249 3265 -7 37 23 0 0 chr11 118385871 118385915 -32397638 + AT_rich Low_complexity Low_complexity 1 44 0 1686 193 3 19 chr11 118386030 118386163 -32397390 + AluJo SINE Alu 1 135 -177 2266 119 0 13 chr11 118386163 118386473 -32397080 + AluSx SINE Alu 1 306 -6 1686 193 3 19 chr11 118386473 118386655 -32396898 + AluJo SINE Alu 135 311 -1 2256 101 3 3 chr11 118386680 118387046 -32396507 + AluY SINE Alu 1 366 0 511 263 23 8 chr11 118387099 118387232 -32396321 + MIR3 SINE MIR 23 157 -51 1357 80 23 0 chr11 118387311 118387486 -32396067 + AluSp SINE Alu 122 300 -13 264 191 38 114 chr11 118387557 118387615 -32395938 - MER112 DNA MER1_type -99 161 113 1647 180 17 3 chr11 118387615 118387909 -32395644 - AluJo SINE Alu -14 298 1 264 191 38 114 chr11 118387909 118387955 -32395598 - MER112 DNA MER1_type -147 113 65 1128 244 109 33 chr11 118388132 118388379 -32395174 + L2 LINE L2 2820 3047 -266 2262 107 3 0 chr11 118388379 118388677 -32394876 + AluSq SINE Alu 1 299 -14 1128 244 109 33 chr11 118388677 118388888 -32394665 + L2 LINE L2 3047 3313 0 25 31 0 0 chr11 118388939 118388971 -32394582 + AT_rich Low_complexity Low_complexity 1 32 0 1827 173 0 0 chr11 118389025 118389303 -32394250 + AluSx SINE Alu 5 282 -30 240 35 0 0 chr11 118389312 118389341 -32394212 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1489 163 0 13 chr11 118389752 118390014 -32393539 - AluJb SINE Alu 0 307 49 4025 165 28 40 chr11 118390014 118390809 -32392744 - LTR1 LTR ERV1 0 785 1 349 71 0 0 chr11 118390809 118390851 -32392702 - AluJb SINE Alu -248 52 11 573 156 147 0 chr11 118391145 118391254 -32392299 + FLAM_C SINE Alu 5 129 -4 1977 136 39 83 chr11 118391380 118391726 -32391827 - LTR45B LTR ERV1 -96 393 33 1681 161 11 3 chr11 118391726 118392012 -32391541 + AluSx SINE Alu 1 288 -24 1977 136 39 83 chr11 118392012 118392035 -32391518 - LTR45B LTR ERV1 -456 33 39 2036 121 0 24 chr11 118392035 118392354 -32391199 + AluSq SINE Alu 1 312 0 1977 136 39 83 chr11 118392354 118392393 -32391160 - LTR45B LTR ERV1 -449 40 1 764 224 83 61 chr11 118393341 118393605 -32389948 - MLT1J LTR MaLR 0 511 242 10116 29 0 195 chr11 118393750 118395465 -32388088 - SVA Other Other -6 1380 1 275 220 17 0 chr11 118395531 118395590 -32387963 + MLT1K LTR MaLR 350 409 -179 2013 119 34 3 chr11 118395733 118396026 -32387527 - AluSx SINE Alu -3 309 8 293 113 151 0 chr11 118396030 118396083 -32387470 + MSTD LTR MaLR 336 396 0 265 289 0 0 chr11 118396086 118396138 -32387415 - MER45 DNA AcHobo -1528 53 2 1031 147 147 15 chr11 118396199 118396525 -32387028 - LTR47A LTR ERVL 0 452 1 245 308 63 6 chr11 118396745 118396904 -32386649 + L1M4c LINE L1 2258 2425 -3959 780 261 44 97 chr11 118396965 118396978 -32386575 + L1M4c LINE L1 2440 2452 -3930 2415 85 10 0 chr11 118396978 118397285 -32386268 + AluSq SINE Alu 1 310 -3 780 261 44 97 chr11 118397285 118397620 -32385933 + L1M4c LINE L1 2452 2803 -3579 775 178 20 99 chr11 118397620 118397822 -32385731 - MER5A DNA MER1_type -3 186 1 780 261 44 97 chr11 118397822 118397918 -32385635 + L1M4c LINE L1 2803 2903 -3479 2177 129 3 0 chr11 118397918 118398229 -32385324 + AluSx SINE Alu 1 312 0 780 261 44 97 chr11 118398229 118398281 -32385272 + L1M4c LINE L1 2903 2956 -3426 2329 81 19 3 chr11 118398281 118398588 -32384965 + AluSp SINE Alu 2 313 0 780 261 44 97 chr11 118398588 118398700 -32384853 + L1M4c LINE L1 2956 3072 -3310 1553 177 89 0 chr11 118398700 118398971 -32384582 + AluJo SINE Alu 1 295 -17 780 261 44 97 chr11 118398971 118399039 -32384514 + L1M4c LINE L1 3072 3142 -3240 1817 166 3 3 chr11 118399039 118399335 -32384218 + AluSx SINE Alu 1 296 -16 780 261 44 97 chr11 118399335 118399479 -32384074 + L1M4c LINE L1 3142 3221 -3161 1471 153 78 0 chr11 118399598 118399884 -32383669 + AluJo SINE Alu 10 315 0 1986 164 45 26 chr11 118400310 118400428 -32383125 - MLT1B LTR MaLR 0 390 276 2128 113 3 0 chr11 118400428 118400719 -32382834 - AluSp SINE Alu -21 292 1 1986 164 45 26 chr11 118400719 118400977 -32382576 - MLT1B LTR MaLR -114 276 7 1144 186 72 27 chr11 118400980 118401243 -32382310 - MLT1B-int LTR MaLR -27 1708 1434 2001 145 3 10 chr11 118401248 118401559 -32381994 + AluSx SINE Alu 1 309 -3 247 314 70 0 chr11 118401562 118401648 -32381905 - MLT1B-int LTR MaLR -362 1373 1282 316 318 145 12 chr11 118401897 118402152 -32381401 - L2 LINE L2 -502 2812 2524 326 104 0 21 chr11 118402153 118402201 -32381352 + AluSp SINE Alu 124 170 -133 232 283 9 57 chr11 118402340 118402446 -32381107 + MLT1K LTR MaLR 418 518 -70 2545 94 5 80 chr11 118402456 118402632 -32380921 + L1MA2 LINE L1 5891 6079 -225 2166 130 0 0 chr11 118402632 118402965 -32380588 + AluSx SINE Alu 1 312 0 2545 94 5 80 chr11 118402965 118403060 -32380493 + L1MA2 LINE L1 6079 6180 -124 2396 84 7 0 chr11 118403060 118403369 -32380184 + AluSp SINE Alu 1 311 -2 2545 94 5 80 chr11 118403369 118403544 -32380009 + L1MA2 LINE L1 6180 6304 0 2015 160 0 3 chr11 118403580 118403886 -32379667 + AluJo SINE Alu 1 305 -7 464 293 79 35 chr11 118403913 118403936 -32379617 - L2 LINE L2 -2292 1022 1001 2342 89 3 0 chr11 118403936 118404229 -32379324 + AluSp SINE Alu 1 294 -19 464 293 79 35 chr11 118404229 118404495 -32379058 - L2 LINE L2 -2313 1001 720 239 87 43 0 chr11 118404809 118404855 -32378698 + T-rich Low_complexity Low_complexity 2 49 0 2107 139 0 0 chr11 118405316 118405611 -32377942 - AluSq SINE Alu -17 296 2 2338 107 0 0 chr11 118405891 118406200 -32377353 + AluSx SINE Alu 1 309 -3 881 262 104 52 chr11 118406200 118406620 -32376933 - HAL1 LINE L1 -782 1725 1328 1987 154 0 13 chr11 118406620 118406931 -32376622 - AluJb SINE Alu -3 309 3 881 262 104 52 chr11 118406931 118406946 -32376607 - HAL1 LINE L1 -1179 1328 1315 2414 86 10 0 chr11 118406946 118407247 -32376306 - AluSx SINE Alu -8 304 1 881 262 104 52 chr11 118407247 118407348 -32376205 - HAL1 LINE L1 -1192 1315 1160 546 204 8 8 chr11 118407520 118407652 -32375901 - HAL1 LINE L1 -1317 1190 1059 216 0 0 0 chr11 118407658 118407682 -32375871 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1438 194 7 21 chr11 118407684 118407967 -32375586 - AluJo SINE Alu -33 279 1 385 240 76 120 chr11 118408116 118408366 -32375187 - HAL1 LINE L1 -2257 250 12 249 351 26 9 chr11 118408374 118408488 -32375065 - MIR SINE MIR -63 145 30 211 222 67 0 chr11 118408613 118408658 -32374895 + MIR SINE MIR 196 243 -19 * 246 236 0 0 chr11 118408628 118408683 -32374870 + L2 LINE L2 3259 3313 0 228 125 0 0 chr11 118408864 118408904 -32374649 + L1MA3 LINE L1 6266 6305 0 201 298 0 0 chr11 118408942 118408989 -32374564 + MIR SINE MIR 45 91 -171 2068 143 3 0 chr11 118409131 118409425 -32374128 + AluSx SINE Alu 1 295 -17 1839 146 0 7 chr11 118409428 118409755 -32373798 + AluSx SINE Alu 5 329 0 871 220 0 13 chr11 118410089 118410248 -32373305 - FRAM SINE Alu -19 157 1 28 29 0 0 chr11 118410665 118410700 -32372853 + AT_rich Low_complexity Low_complexity 1 35 0 727 309 63 31 chr11 118410721 118410824 -32372729 + L2 LINE L2 2296 2394 -920 2357 104 3 0 chr11 118410824 118411131 -32372422 - AluSx SINE Alu -4 308 1 727 309 63 31 chr11 118411131 118411376 -32372177 + L2 LINE L2 2394 2655 -659 2198 110 0 0 chr11 118411610 118411935 -32371618 - AluSx SINE Alu 0 325 1 2050 150 3 0 chr11 118412058 118412358 -32371195 - AluSx SINE Alu -11 301 1 227 219 141 31 chr11 118412429 118412493 -32371060 + MIR SINE MIR 18 88 -174 2290 97 7 10 chr11 118412494 118412669 -32370884 - AluSg1 SINE Alu -1 308 133 2350 77 3 16 chr11 118412669 118412982 -32370571 - AluY SINE Alu -1 310 2 2290 97 7 10 chr11 118412982 118413115 -32370438 - AluSg1 SINE Alu -176 133 1 22 35 0 0 chr11 118413115 118413144 -32370409 + AT_rich Low_complexity Low_complexity 1 29 0 245 211 19 0 chr11 118413161 118413213 -32370340 + MIR SINE MIR 99 151 -111 24 85 0 0 chr11 118413232 118413291 -32370262 + AT_rich Low_complexity Low_complexity 1 59 0 1874 128 42 45 chr11 118413512 118413824 -32369729 - AluSx SINE Alu -1 311 1 330 45 0 0 chr11 118414202 118414246 -32369307 + (TG)n Simple_repeat Simple_repeat 1 44 0 1220 168 137 23 chr11 118414398 118414660 -32368893 - AluJb SINE Alu -20 292 1 850 148 0 63 chr11 118414705 118414847 -32368706 - FLAM_C SINE Alu 0 133 1 2160 125 6 3 chr11 118414928 118415239 -32368314 - AluSp SINE Alu -1 312 1 2225 136 111 25 chr11 118415726 118415854 -32367699 - L1M3 LINE L1 -381 5787 5671 2321 99 0 3 chr11 118415854 118416156 -32367397 - AluY SINE Alu -10 301 1 2225 136 111 25 chr11 118416156 118416461 -32367092 - L1M3 LINE L1 -497 5671 5317 2150 136 0 53 chr11 118416461 118416792 -32366761 + L1MB1 LINE L1 5812 6122 -46 2085 131 3 0 chr11 118416792 118417090 -32366463 + AluSq SINE Alu 1 299 -14 2150 136 0 53 chr11 118417090 118417134 -32366419 + L1MB1 LINE L1 6122 6167 -1 398 20 20 0 chr11 118417642 118417693 -32365860 + (TTCTCC)n Simple_repeat Simple_repeat 4 55 0 1944 86 4 0 chr11 118417835 118418080 -32365473 - AluSx SINE Alu -9 303 58 1937 139 0 0 chr11 118418635 118418916 -32364637 - AluSx SINE Alu -31 281 1 304 268 57 32 chr11 118418921 118419078 -32364475 + Charlie7 DNA MER1_type 2452 2612 0 516 306 86 0 chr11 118419111 118419297 -32364256 + MIR SINE MIR 2 203 -59 2133 129 10 0 chr11 118419544 118419853 -32363700 - AluSx SINE Alu 0 312 1 2540 134 143 0 chr11 118419879 118420356 -32363197 - L1MA7 LINE L1 0 6291 5747 446 267 80 43 chr11 118420937 118421124 -32362429 - MIR SINE MIR -56 206 13 2282 100 0 7 chr11 118422704 118423003 -32360550 + AluSq SINE Alu 1 297 -16 21 71 0 0 chr11 118423043 118423085 -32360468 + AT_rich Low_complexity Low_complexity 1 42 0 210 150 0 0 chr11 118424068 118424108 -32359445 + (TG)n Simple_repeat Simple_repeat 2 41 0 1163 252 68 73 chr11 118425361 118425953 -32357600 - L1ME3A LINE L1 -36 6134 5546 212 275 36 109 chr11 118426041 118426179 -32357374 + MIR SINE MIR 57 184 -78 911 159 0 0 chr11 118426627 118426759 -32356794 - FLAM_C SINE Alu -1 132 1 796 202 0 0 chr11 118426905 118427029 -32356524 - FLAM_A SINE Alu -9 124 1 200 200 0 0 chr11 118427841 118427876 -32355677 + (CA)n Simple_repeat Simple_repeat 2 36 0 783 176 77 55 chr11 118428005 118428187 -32355366 - MLT2D LTR ERVL 0 414 229 * 1970 134 16 3 chr11 118428178 118428484 -32355069 - MLT1B LTR MaLR -80 310 1 23 0 0 0 chr11 118429586 118429609 -32353944 + AT_rich Low_complexity Low_complexity 1 23 0 576 205 32 87 chr11 118429950 118430135 -32353418 + MER5B DNA MER1_type 4 178 0 553 274 72 7 chr11 118430146 118430299 -32353254 - MER5A DNA MER1_type -3 186 24 489 260 24 71 chr11 118430307 118430476 -32353077 - MER5B DNA MER1_type -13 165 5 360 0 0 0 chr11 118430723 118430763 -32352790 + (TG)n Simple_repeat Simple_repeat 2 41 0 196 250 125 0 chr11 118430853 118430909 -32352644 - MIR SINE MIR -12 250 188 480 318 68 7 chr11 118431569 118431717 -32351836 - L2 LINE L2 0 3272 3116 248 322 183 5 chr11 118433785 118433998 -32349555 - MIR SINE MIR -6 256 9 293 301 24 0 chr11 118434468 118434551 -32349002 + MIR SINE MIR 73 157 -105 395 270 90 0 chr11 118434581 118434692 -32348861 + MIR SINE MIR 137 257 -5 2327 102 3 0 chr11 118434769 118435073 -32348480 - AluSx SINE Alu -7 305 1 426 288 68 34 chr11 118435276 118435453 -32348100 + MER5A DNA MER1_type 3 185 -4 1626 181 0 42 chr11 118435505 118435815 -32347738 - AluJb SINE Alu -15 297 1 2474 52 0 0 chr11 118437125 118437414 -32346139 + AluY SINE Alu 8 296 -15 802 161 0 0 chr11 118437419 118437537 -32346016 + FLAM_C SINE Alu 1 118 -25 30 0 0 0 chr11 118437537 118437567 -32345986 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr11 118438079 118438099 -32345454 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1947 101 14 11 chr11 118438131 118438450 -32345103 + AluSc SINE Alu 1 320 0 764 202 0 0 chr11 118438707 118438831 -32344722 - FLAM_A SINE Alu -5 128 5 2005 138 7 10 chr11 118438852 118439148 -32344405 - AluJb SINE Alu -17 295 1 224 360 85 13 chr11 118439487 118439640 -32343913 - MIR3 SINE MIR -15 193 30 367 307 101 9 chr11 118440343 118440571 -32342982 + MIR SINE MIR 2 250 -12 21 57 0 0 chr11 118440821 118440856 -32342697 + AT_rich Low_complexity Low_complexity 1 35 0 528 284 112 61 chr11 118440992 118442167 -32341386 - L1M4 LINE L1 -1453 4693 3375 2883 234 99 64 chr11 118442558 118443214 -32340339 - L1MDb LINE L1 -4080 2507 1876 2145 86 11 4 chr11 118443214 118443532 -32340021 - AluSc SINE Alu 0 320 1 2883 234 99 64 chr11 118443532 118444507 -32339046 - L1MDb LINE L1 -4711 1876 765 239 232 18 0 chr11 118445416 118445472 -32338081 + L1MCc LINE L1 1281 1337 -5086 1270 175 112 15 chr11 118446043 118446115 -32337438 + AluJo SINE Alu 18 82 -230 1970 104 0 15 chr11 118446115 118446383 -32337170 - AluSg SINE Alu -46 264 1 1270 175 112 15 chr11 118446383 118446578 -32336975 + AluJo SINE Alu 82 311 -1 434 286 29 64 chr11 118446869 118447009 -32336544 - L2 LINE L2 -5 3267 3133 333 316 0 0 chr11 118447028 118447142 -32336411 - MIR SINE MIR -3 259 146 180 0 0 0 chr11 118447349 118447369 -32336184 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 249 356 69 11 chr11 118447371 118447545 -32336008 - L2 LINE L2 -248 3024 2841 1635 255 67 32 chr11 118447563 118448089 -32335464 - MLT1H LTR MaLR 0 549 6 183 344 16 16 chr11 118448433 118448497 -32335056 + L3 LINE CR1 1512 1575 -2 2094 120 0 3 chr11 118448844 118449127 -32334426 + AluSx SINE Alu 1 282 -30 403 234 83 130 chr11 118449264 118449341 -32334212 + MIR SINE MIR 67 146 -116 1753 157 7 4 chr11 118449341 118449622 -32333931 + AluJb SINE Alu 4 285 -27 403 234 83 130 chr11 118449622 118449736 -32333817 + MIR SINE MIR 146 249 -13 28 29 0 0 chr11 118449754 118449789 -32333764 + AT_rich Low_complexity Low_complexity 1 35 0 2233 99 3 17 chr11 118449803 118450105 -32333448 - AluSx SINE Alu -13 299 2 354 319 94 58 chr11 118450369 118450645 -32332908 - L2 LINE L2 -1 3271 2986 * 375 272 18 26 chr11 118450639 118450753 -32332800 + MIR SINE MIR 37 149 -113 462 190 0 0 chr11 118450895 118450974 -32332579 - MIR SINE MIR -67 195 117 1953 139 160 11 chr11 118450983 118451351 -32332202 - MSTA LTR MaLR 0 428 6 28 61 0 0 chr11 118451453 118451502 -32332051 + AT_rich Low_complexity Low_complexity 1 49 0 2664 134 57 9 chr11 118451502 118451815 -32331738 - L1PA16 LINE L1 -9 6157 5817 2458 88 0 0 chr11 118451815 118452121 -32331432 - AluSg SINE Alu -4 306 1 2664 134 57 9 chr11 118452121 118452232 -32331321 - L1PA16 LINE L1 -349 5817 5713 236 317 42 17 chr11 118452353 118452473 -32331080 - LTR67 LTR ERVL -3 554 432 385 299 51 0 chr11 118453215 118453332 -32330221 - MIR3 SINE MIR -4 204 82 936 261 107 14 chr11 118453998 118454278 -32329275 - MLT1H LTR MaLR 0 549 244 1444 159 55 0 chr11 118454316 118454573 -32328980 - AluSc SINE Alu -2 307 37 2094 138 7 0 chr11 118454761 118455065 -32328488 + AluSx SINE Alu 1 306 -6 226 329 0 26 chr11 118455374 118455450 -32328103 + MLT1K LTR MaLR 190 263 -325 400 213 0 0 chr11 118455542 118455617 -32327936 + MLT1K LTR MaLR 406 480 -108 229 229 33 0 chr11 118455682 118455743 -32327810 + MIR SINE MIR 184 246 -16 268 224 0 0 chr11 118455754 118455812 -32327741 + MLT1L LTR MaLR 552 609 -6 973 195 0 37 chr11 118456334 118456549 -32327004 - AluJo SINE Alu -17 295 89 2438 43 0 36 chr11 118456829 118457133 -32326420 + AluY SINE Alu 1 293 -18 904 178 6 6 chr11 118457335 118457504 -32326049 - FRAM SINE Alu -7 169 1 252 0 0 0 chr11 118458223 118458251 -32325302 + (T)n Simple_repeat Simple_repeat 1 28 0 340 194 0 0 chr11 118458254 118458326 -32325227 - LTR12 LTR ERV1 -352 362 291 390 198 47 0 chr11 118458467 118458553 -32325000 - MER46C DNA MER2_type -98 240 151 1561 111 5 5 chr11 118458653 118458870 -32324683 - AluSq SINE Alu -94 219 3 945 136 0 0 chr11 118459295 118459427 -32324126 + AluSx SINE Alu 1 132 -181 2179 94 0 0 chr11 118459430 118459713 -32323840 + AluSc SINE Alu 1 283 -26 211 128 0 0 chr11 118459713 118459752 -32323801 + (CAA)n Simple_repeat Simple_repeat 1 180 0 2133 100 0 4 chr11 118459765 118460035 -32323518 + AluSq SINE Alu 15 283 -30 211 37 0 0 chr11 118460035 118460062 -32323491 + (TAAA)n Simple_repeat Simple_repeat 2 84 0 1142 127 0 0 chr11 118460069 118460227 -32323326 + AluSg/x SINE Alu 130 287 -25 302 0 26 0 chr11 118460234 118460272 -32323281 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 649 200 7 22 chr11 118460607 118460742 -32322811 - FLAM_C SINE Alu 0 133 1 2489 222 93 27 chr11 118460846 118460992 -32322561 - L1ME3 LINE L1 -24 6138 6003 1993 190 50 43 chr11 118460992 118461274 -32322279 - MLT1C LTR MaLR 0 467 179 2469 86 3 3 chr11 118461274 118461578 -32321975 - AluSp SINE Alu -9 304 1 1993 190 50 43 chr11 118461578 118461759 -32321794 - MLT1C LTR MaLR -288 179 1 2489 222 93 27 chr11 118461759 118462024 -32321529 - L1ME3 LINE L1 -159 6003 5757 2114 132 7 0 chr11 118462024 118462327 -32321226 + AluJb SINE Alu 1 305 -7 2489 222 93 27 chr11 118462327 118462645 -32320908 - L1ME3 LINE L1 -405 5757 5360 3190 216 44 62 chr11 118462711 118463537 -32320016 - MER21B LTR ERV1 -52 811 1 2570 65 0 0 chr11 118463585 118463895 -32319658 - AluY SINE Alu 0 311 2 2282 88 7 3 chr11 118463913 118464209 -32319344 + AluSp SINE Alu 1 297 -16 682 153 32 8 chr11 118464217 118464341 -32319212 + FLAM_C SINE Alu 2 128 -15 2135 135 0 3 chr11 118464641 118464937 -32318616 + AluSg SINE Alu 1 295 -15 779 176 8 0 chr11 118464940 118465071 -32318482 + FLAM_C SINE Alu 2 133 0 2490 266 46 34 chr11 118465091 118465832 -32317721 + HAL1 LINE L1 11 760 -1747 343 254 81 60 chr11 118465846 118465896 -32317657 + HAL1 LINE L1 844 891 -1616 189 0 0 0 chr11 118465896 118465917 -32317636 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 343 254 81 60 chr11 118465917 118466051 -32317502 + HAL1 LINE L1 891 1032 -1475 258 176 0 0 chr11 118466064 118466115 -32317438 + (CA)n Simple_repeat Simple_repeat 2 52 0 1384 179 43 43 chr11 118466278 118466579 -32316974 + AluJb SINE Alu 1 301 -11 247 252 123 55 chr11 118466641 118467046 -32316507 - L1MC/D LINE L1 -769 5377 5019 1832 137 16 44 chr11 118467053 118467368 -32316185 - AluJo SINE Alu -6 306 1 2200 125 0 3 chr11 118467403 118467706 -32315847 - AluSx SINE Alu -10 302 1 1111 216 14 58 chr11 118467939 118468292 -32315261 + L1MC5 LINE L1 6659 7102 -940 2017 266 55 39 chr11 118468292 118468780 -32314773 - ERVL LTR ERVL -951 4813 4311 3120 184 14 4 chr11 118468780 118469333 -32314220 - MER68 LTR ERV1 0 562 4 2017 266 55 39 chr11 118469333 118469461 -32314092 - ERVL LTR ERVL -1453 4311 4187 376 313 26 22 chr11 118469527 118469783 -32313770 - ERVL LTR ERVL -21 5368 4787 1182 154 95 101 chr11 118469795 118469848 -32313705 + MLT1D LTR MaLR 41 93 -412 1998 132 10 3 chr11 118469848 118470137 -32313416 + AluSx SINE Alu 1 291 -21 1182 154 95 101 chr11 118470137 118470420 -32313133 + MLT1D LTR MaLR 93 375 -130 216 0 0 0 chr11 118470420 118470444 -32313109 + (T)n Simple_repeat Simple_repeat 1 24 0 1961 168 0 13 chr11 118470464 118470773 -32312780 + AluJb SINE Alu 1 305 -7 433 153 165 0 chr11 118470791 118470876 -32312677 - FRAM SINE Alu -30 146 48 713 122 7 102 chr11 118470876 118470955 -32312598 + MLT1D LTR MaLR 371 431 -74 2567 57 0 0 chr11 118470955 118471275 -32312278 - AluY SINE Alu 0 311 1 713 122 7 102 chr11 118471275 118471342 -32312211 + MLT1D LTR MaLR 431 503 -2 1013 333 61 17 chr11 118471364 118472007 -32311546 - ERVL LTR ERVL -573 5191 4521 1112 325 88 15 chr11 118472028 118472619 -32310934 - ERVL LTR ERVL -1239 4415 3782 374 210 20 11 chr11 118472629 118472735 -32310818 - MER67B LTR ERV1 -4 657 434 685 134 0 0 chr11 118472736 118472833 -32310720 + AluJ/FLAM SINE Alu 2 98 -214 3202 75 18 44 chr11 118472833 118473289 -32310264 + MLT2A1 LTR ERVL 1 444 0 22498 66 10 1 chr11 118473289 118476048 -32307505 + HERVL-A1 LTR ERVL 1 2783 -2871 270 0 0 0 chr11 118476048 118476078 -32307475 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2815 46 0 0 chr11 118476080 118476406 -32307147 - LTR17 LTR ERV1 -454 326 1 2370 72 0 0 chr11 118476406 118476698 -32306855 - HERV17 LTR ERV1 0 8626 8335 289 77 0 0 chr11 118476688 118476727 -32306826 - HERV17 LTR ERV1 -1078 7548 7510 * 4756 77 35 3 chr11 118476720 118477356 -32306197 - HERV17 LTR ERV1 -2607 6019 5364 6170 54 0 5 chr11 118477373 118478113 -32305440 - HERV17 LTR ERV1 -3223 5403 4668 18450 57 15 1 chr11 118478114 118480324 -32303229 + HERVL-A1 LTR ERVL 2776 5016 -638 2096 135 0 10 chr11 118480559 118480862 -32302691 + AluSx SINE Alu 1 300 -12 2164 128 3 0 chr11 118480896 118481192 -32302361 - AluSg SINE Alu -13 297 1 22 0 0 0 chr11 118481192 118481214 -32302339 + AT_rich Low_complexity Low_complexity 1 22 0 4411 141 30 6 chr11 118481442 118482136 -32301417 - MER50 LTR ERV1 -23 711 1 4065 72 24 22 chr11 118482341 118482713 -32300840 + MER41A LTR ERV1 1 376 -178 2459 84 0 3 chr11 118482713 118483023 -32300530 + AluSc SINE Alu 1 309 0 4065 72 24 22 chr11 118483023 118483203 -32300350 + MER41A LTR ERV1 376 554 0 4196 92 2 4 chr11 118483308 118483863 -32299690 - LTR8 LTR ERV1 0 691 138 998 97 8 15 chr11 118483866 118484000 -32299553 + AluSq/x SINE Alu 3 135 -178 1989 127 7 3 chr11 118484000 118484291 -32299262 + AluSg SINE Alu 1 292 -18 738 56 19 0 chr11 118484298 118484405 -32299148 + LTR9B LTR ERV1 445 553 -91 261 0 0 0 chr11 118484405 118484434 -32299119 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 600 248 81 6 chr11 118484438 118484599 -32298954 + FAM SINE Alu 2 174 -1 1165 93 0 0 chr11 118484600 118484751 -32298802 - LTR8 LTR ERV1 -540 151 1 1399 151 204 29 chr11 118484908 118485291 -32298262 - LTR7 LTR ERV1 0 450 1 332 271 104 57 chr11 118485363 118485773 -32297780 + L1MEc LINE L1 1625 2000 -4540 235 178 0 82 chr11 118485773 118485832 -32297721 - MER45A DNA AcHobo -1 177 125 2406 94 0 0 chr11 118485832 118486139 -32297414 + AluY SINE Alu 1 307 -4 2087 132 3 3 chr11 118486152 118486462 -32297091 + AluSx SINE Alu 1 310 -2 256 200 0 20 chr11 118486462 118486512 -32297041 - MER45A DNA AcHobo -44 134 86 2089 134 7 7 chr11 118486512 118486818 -32296735 + AluSx SINE Alu 4 309 -3 1065 180 24 125 chr11 118486849 118487177 -32296376 + MLT1A1 LTR MaLR 1 295 -70 1299 126 11 5 chr11 118487182 118487373 -32296180 - AluSg/x SINE Alu -3 309 118 1950 152 7 0 chr11 118487604 118487894 -32295659 - AluSx SINE Alu -20 292 1 272 27 27 0 chr11 118488627 118488664 -32294889 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 28 79 0 0 chr11 118489136 118489199 -32294354 + AT_rich Low_complexity Low_complexity 1 63 0 331 200 77 0 chr11 118489208 118489273 -32294280 + AluJ/FLAM SINE Alu 1 70 -232 27 0 0 0 chr11 118489298 118489325 -32294228 + AT_rich Low_complexity Low_complexity 1 27 0 755 156 56 6 chr11 118489449 118489609 -32293944 + L1MA6 LINE L1 6133 6300 0 2375 81 3 3 chr11 118489685 118489994 -32293559 + AluY SINE Alu 1 309 -2 180 235 44 59 chr11 118490539 118490607 -32292946 + L2 LINE L2 2992 3058 -214 189 0 0 0 chr11 118490955 118490976 -32292577 + (T)n Simple_repeat Simple_repeat 1 21 0 3207 83 57 2 chr11 118491131 118491586 -32291967 + L1PA13 LINE L1 5684 6163 0 2227 302 78 35 chr11 118491637 118492162 -32291391 - HERV16 LTR ERVL -1944 3052 2864 2406 99 0 3 chr11 118492162 118492474 -32291079 - AluSx SINE Alu 0 312 2 2227 302 78 35 chr11 118492474 118493186 -32290367 - HERV16 LTR ERVL -2132 2864 2184 340 137 0 7 chr11 118493187 118493255 -32290298 + L1PA12 LINE L1 5955 6019 -149 1680 152 74 13 chr11 118493287 118493596 -32289957 - Tigger3(Golem) DNA MER2_type -1 3028 2701 4626 114 54 160 chr11 118493912 118494459 -32289094 - Tigger3b DNA MER2_type -1798 1230 626 908 144 0 27 chr11 118494459 118494605 -32288948 + FLAM_C SINE Alu 1 142 -1 4626 114 54 160 chr11 118494605 118494971 -32288582 - Tigger3b DNA MER2_type -2402 626 317 2274 102 118 38 chr11 118494971 118495371 -32288182 + MSTB1 LTR MaLR 1 432 0 4626 114 54 160 chr11 118495371 118495534 -32288019 - Tigger3b DNA MER2_type -2711 317 138 647 179 172 0 chr11 118495634 118495768 -32287785 - Tigger3b DNA MER2_type -1074 157 1 3156 254 70 45 chr11 118495768 118496106 -32287447 - HERV16 LTR ERVL -2858 2138 1810 2497 77 0 0 chr11 118496106 118496406 -32287147 - AluY SINE Alu -11 300 1 3156 254 70 45 chr11 118496406 118496604 -32286949 - HERV16 LTR ERVL -3186 1810 1618 2222 114 0 0 chr11 118496604 118496903 -32286650 - AluSx SINE Alu -13 299 1 3156 254 70 45 chr11 118496903 118496935 -32286618 - HERV16 LTR ERVL -3378 1618 1588 1831 150 28 133 chr11 118496935 118497395 -32286158 - MLT2D LTR ERVL 0 414 3 3156 254 70 45 chr11 118497395 118497816 -32285737 - HERV16 LTR ERVL -3408 1588 1123 2276 126 9 20 chr11 118497826 118498167 -32285386 + MER1B DNA MER1_type 1 337 0 2005 138 3 10 chr11 118498204 118498509 -32285044 + AluSq SINE Alu 1 303 -10 272 137 20 0 chr11 118498626 118498677 -32284876 - Alu SINE Alu -250 52 1 1421 178 29 0 chr11 118498944 118499185 -32284368 + AluJo SINE Alu 21 268 -44 1617 163 27 17 chr11 118499195 118499495 -32284058 + AluJo SINE Alu 1 303 -9 1768 187 7 0 chr11 118500654 118500953 -32282600 + AluJb SINE Alu 5 305 -7 289 270 150 10 chr11 118501926 118502026 -32281527 - MLT1H LTR MaLR -58 491 378 322 366 8 0 chr11 118502128 118502262 -32281291 - MLT1H LTR MaLR -322 227 93 1732 87 0 0 chr11 118502269 118502488 -32281065 - AluSg/x SINE Alu 0 310 92 2053 150 3 0 chr11 118502589 118502895 -32280658 - AluSx SINE Alu -5 307 1 4010 169 50 48 chr11 118502915 118502953 -32280600 + L1MB7 LINE L1 5272 5308 -876 1655 179 7 0 chr11 118502953 118503233 -32280320 + AluJb SINE Alu 1 282 -30 336 24 0 0 chr11 118503236 118503277 -32280276 + (CA)n Simple_repeat Simple_repeat 1 41 0 4010 169 50 48 chr11 118503277 118503413 -32280140 + L1MB7 LINE L1 5309 5443 -741 1562 206 11 3 chr11 118503413 118503695 -32279858 + AluJo SINE Alu 13 296 -16 4010 169 50 48 chr11 118503695 118504346 -32279207 + L1MB7 LINE L1 5443 6107 -77 2351 86 3 10 chr11 118504346 118504647 -32278906 - AluSx SINE Alu 0 312 14 4010 169 50 48 chr11 118504647 118504717 -32278836 + L1MB7 LINE L1 6107 6175 -9 1977 193 111 14 chr11 118504717 118505220 -32278333 - Tigger6a DNA MER2_type -274 809 258 25 0 0 0 chr11 118505239 118505264 -32278289 + AT_rich Low_complexity Low_complexity 1 25 0 1327 165 54 31 chr11 118505264 118505524 -32278029 - AluJo SINE Alu -23 289 24 891 243 95 0 chr11 118505534 118505756 -32277797 - Tigger6a DNA MER2_type -840 243 1 21 57 0 0 chr11 118506060 118506095 -32277458 + AT_rich Low_complexity Low_complexity 1 35 0 587 335 151 12 chr11 118506567 118506985 -32276568 - MLT1J LTR MaLR -18 493 18 1496 190 33 0 chr11 118507433 118507707 -32275846 - AluJo SINE Alu -29 283 1 2048 113 25 0 chr11 118507902 118508184 -32275369 - AluSp SINE Alu -14 299 11 456 244 226 6 chr11 118508185 118508353 -32275200 - MIR SINE MIR -35 227 23 349 268 41 0 chr11 118508361 118508484 -32275069 + L2 LINE L2 2646 2773 -541 1623 201 10 14 chr11 118508568 118508857 -32274696 + AluJo SINE Alu 1 288 -24 2089 149 0 0 chr11 118508879 118509181 -32274372 + AluSx SINE Alu 1 302 -10 217 275 72 0 chr11 118509291 118509360 -32274193 - L2 LINE L2 -221 3051 2978 1958 147 3 10 chr11 118509420 118509726 -32273827 + AluSx SINE Alu 1 304 -8 203 205 0 0 chr11 118509964 118510003 -32273550 - MIR SINE MIR -6 256 218 2402 98 0 3 chr11 118510050 118510357 -32273196 + AluSq SINE Alu 1 306 -7 2209 107 23 0 chr11 118510370 118510669 -32272884 + AluSq SINE Alu 5 310 -3 648 274 173 4 chr11 118510694 118510931 -32272622 - LTR16B LTR ERVL -50 414 138 1737 152 24 3 chr11 118511150 118511306 -32272247 - AluJo SINE Alu -17 295 129 2210 134 0 0 chr11 118511306 118511612 -32271941 - AluSx SINE Alu -6 306 1 1737 152 24 3 chr11 118511612 118511744 -32271809 - AluJo SINE Alu -183 129 1 1096 168 67 0 chr11 118512214 118512452 -32271101 + L1MB4 LINE L1 5894 6147 -33 2331 89 0 19 chr11 118512655 118512968 -32270585 - AluSc SINE Alu -2 307 1 1411 163 78 3 chr11 118513044 118513351 -32270202 - L1MA6 LINE L1 0 6300 5971 1881 162 3 10 chr11 118513683 118513985 -32269568 - AluJb SINE Alu -3 309 10 1671 160 13 26 chr11 118514035 118514341 -32269212 + AluJb SINE Alu 1 302 -10 1309 169 0 9 chr11 118514406 118514619 -32268934 + AluJb SINE Alu 81 291 -21 412 264 58 86 chr11 118516136 118516310 -32267243 - L2 LINE L2 0 3272 3104 194 319 185 0 chr11 118516422 118516541 -32267012 - L2 LINE L2 -366 2947 2807 1604 164 13 61 chr11 118516601 118516913 -32266640 - AluJo SINE Alu -15 297 1 23 0 0 0 chr11 118517287 118517310 -32266243 + AT_rich Low_complexity Low_complexity 1 23 0 606 207 16 0 chr11 118517427 118517548 -32266005 + AluJb SINE Alu 158 280 -32 246 32 0 0 chr11 118517548 118517579 -32265974 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 2309 83 36 3 chr11 118517670 118517971 -32265582 + AluSp SINE Alu 1 311 -2 594 233 101 41 chr11 118518272 118518491 -32265062 - MER112 DNA MER1_type 0 260 29 543 304 92 18 chr11 118518635 118518852 -32264701 - MIR SINE MIR -1 261 29 259 346 67 29 chr11 118518888 118518992 -32264561 - L2 LINE L2 -22 3250 3143 209 289 167 22 chr11 118519095 118519185 -32264368 + L2 LINE L2 3149 3251 -21 2196 88 3 17 chr11 118519535 118519830 -32263723 - AluY SINE Alu -20 291 1 311 136 6 3 chr11 118519943 118520008 -32263545 + FLAM_A SINE Alu 81 133 0 3097 143 19 12 chr11 118520008 118520524 -32263029 + L1MA3 LINE L1 24 543 -7022 2339 74 7 0 chr11 118520569 118520854 -32262699 + AluY SINE Alu 4 290 -21 27 0 0 0 chr11 118520854 118520881 -32262672 + AT_rich Low_complexity Low_complexity 1 27 0 1487 152 4 0 chr11 118520883 118521152 -32262401 + L1MA3 LINE L1 4911 5180 -2385 2351 103 6 3 chr11 118521283 118521594 -32261959 + AluSp SINE Alu 1 312 -1 962 282 60 0 chr11 118521683 118521949 -32261604 - L2 LINE L2 -489 2825 2544 1375 180 75 12 chr11 118522324 118522579 -32260974 - AluJo SINE Alu -41 271 1 1349 192 159 66 chr11 118522662 118522776 -32260777 - L1MA9 LINE L1 -114 6198 6096 1911 142 9 25 chr11 118522776 118523093 -32260460 - AluJo SINE Alu 0 312 1 1349 192 159 66 chr11 118523093 118523505 -32260048 - L1MA9 LINE L1 -216 6096 5623 1820 262 116 24 chr11 118523505 118524119 -32259434 - L2 LINE L2 -768 2546 1877 2006 115 62 3 chr11 118524124 118524412 -32259141 + AluSx SINE Alu 1 305 -7 2158 117 0 13 chr11 118524422 118524720 -32258833 + AluSx SINE Alu 1 294 -18 24 67 0 0 chr11 118524872 118524917 -32258636 + AT_rich Low_complexity Low_complexity 1 45 0 28 0 0 0 chr11 118525144 118525172 -32258381 + AT_rich Low_complexity Low_complexity 1 28 0 2246 114 0 7 chr11 118525866 118526165 -32257388 - AluSx SINE Alu -15 297 1 1031 232 49 34 chr11 118526361 118526688 -32256865 - L1ME2 LINE L1 -10 6154 5823 698 218 52 44 chr11 118526687 118526916 -32256637 - L1ME2 LINE L1 -588 5576 5346 * 1358 177 35 4 chr11 118526917 118527149 -32256404 - AluJo SINE Alu -73 239 1 2118 116 0 0 chr11 118527158 118527442 -32256111 - AluSc SINE Alu -14 295 12 2121 115 7 10 chr11 118527544 118527848 -32255705 - AluSq SINE Alu -8 305 3 2466 174 17 0 chr11 118527848 118528319 -32255234 + L1MA3 LINE L1 5166 5644 -1921 1642 121 10 28 chr11 118528317 118528607 -32254946 + L1MA3 LINE L1 6851 7135 -589 * 226 135 54 61 chr11 118528617 118528701 -32254852 + (TTATA)n Simple_repeat Simple_repeat 4 87 -63 598 14 0 0 chr11 118528701 118528775 -32254778 - L1PA4 LINE L1 -3 6152 6079 3450 104 31 36 chr11 118528775 118529131 -32254422 + L1MA3 LINE L1 7113 7471 -253 2333 89 3 13 chr11 118529131 118529444 -32254109 + AluSp SINE Alu 1 310 -3 3450 104 31 36 chr11 118529444 118529689 -32253864 + L1MA3 LINE L1 7471 7716 -8 226 135 54 61 chr11 118529689 118529751 -32253802 + (TTATA)n Simple_repeat Simple_repeat 85 150 0 24 53 0 0 chr11 118529751 118529789 -32253764 + AT_rich Low_complexity Low_complexity 1 38 0 225 284 153 40 chr11 118529869 118530045 -32253508 + L1ME LINE L1 5504 5699 -422 1527 135 98 49 chr11 118530182 118530359 -32253194 + THE1B LTR MaLR 1 168 -196 198 0 0 0 chr11 118530359 118530381 -32253172 + (TC)n Simple_repeat Simple_repeat 1 22 0 1527 135 98 49 chr11 118530381 118530550 -32253003 + THE1B LTR MaLR 168 364 0 21 0 0 0 chr11 118530579 118530600 -32252953 + AT_rich Low_complexity Low_complexity 1 21 0 227 264 0 42 chr11 118530610 118530682 -32252871 + GA-rich Low_complexity Low_complexity 5 73 0 273 161 0 69 chr11 118530708 118530795 -32252758 + L1MC5 LINE L1 7833 7913 -48 241 194 0 97 chr11 118531312 118531374 -32252179 + L2 LINE L2 3258 3313 0 2185 92 27 3 chr11 118531427 118531722 -32251831 - AluSx SINE Alu -10 302 1 22 0 0 0 chr11 118532068 118532090 -32251463 + AT_rich Low_complexity Low_complexity 1 22 0 453 299 62 31 chr11 118532296 118532377 -32251176 - MIR SINE MIR -29 233 156 2271 83 0 23 chr11 118532377 118532679 -32250874 - AluSg SINE Alu -15 295 1 453 299 62 31 chr11 118532679 118532821 -32250732 - MIR SINE MIR -106 156 3 326 282 141 0 chr11 118532931 118533016 -32250537 + L2 LINE L2 3168 3264 -8 976 194 0 0 chr11 118533099 118533269 -32250284 + FAM SINE Alu 1 170 -5 324 274 53 21 chr11 118533536 118533631 -32249922 + L2 LINE L2 2960 3057 -256 2243 116 0 0 chr11 118533728 118534029 -32249524 + AluY SINE Alu 1 301 -10 2445 87 0 0 chr11 118534045 118534345 -32249208 - AluSg SINE Alu -10 300 1 1926 216 77 26 chr11 118534407 118534945 -32248608 - L1MD2 LINE L1 -83 7725 6163 1038 178 23 0 chr11 118534947 118535121 -32248432 + AluJo SINE Alu 2 179 -133 1398 164 22 116 chr11 118536195 118536343 -32247210 + AluJo SINE Alu 1 105 -207 2112 134 0 0 chr11 118536343 118536641 -32246912 + AluSx SINE Alu 1 298 -14 1398 164 22 116 chr11 118536641 118536810 -32246743 + AluJo SINE Alu 105 288 -24 21 0 0 0 chr11 118536810 118536831 -32246722 + AT_rich Low_complexity Low_complexity 1 21 0 309 297 0 11 chr11 118536880 118536971 -32246582 - MER82 DNA MER2_type -563 90 1 23 0 0 0 chr11 118537063 118537086 -32246467 + AT_rich Low_complexity Low_complexity 1 23 0 1182 161 9 37 chr11 118538086 118538135 -32245418 + AluJb SINE Alu 89 138 -174 1985 154 24 0 chr11 118538135 118538428 -32245125 + AluSx SINE Alu 8 307 -5 1182 161 9 37 chr11 118538428 118538595 -32244958 + AluJb SINE Alu 138 299 -13 213 317 49 12 chr11 118538965 118539047 -32244506 - L2 LINE L2 -158 3114 3030 422 142 0 15 chr11 118539712 118539945 -32243608 + AluJo SINE Alu 1 286 -26 1534 188 3 21 chr11 118540028 118540315 -32243238 + AluJb SINE Alu 26 307 -5 260 289 44 0 chr11 118540365 118540455 -32243098 + MIR SINE MIR 120 213 -49 726 283 49 20 chr11 118540715 118540959 -32242594 - MIR SINE MIR 0 262 12 2065 128 6 10 chr11 118541606 118541918 -32241635 + AluSx SINE Alu 1 311 -1 1718 153 145 55 chr11 118542498 118542632 -32240921 + L1MB7 LINE L1 5645 5766 -418 1970 151 6 6 chr11 118542632 118542944 -32240609 + AluJo SINE Alu 1 312 0 1718 153 145 55 chr11 118542944 118543286 -32240267 + L1MB7 LINE L1 5766 6164 -20 1746 127 75 0 chr11 118543398 118543650 -32239903 - AluSx SINE Alu -41 271 1 1915 150 7 16 chr11 118543651 118543957 -32239596 - AluJb SINE Alu 0 312 10 7208 111 23 11 chr11 118544009 118545167 -32238386 - Tigger1 DNA MER2_type -79 2339 1168 654 150 204 14 chr11 118545167 118545314 -32238239 - AluSg/x SINE Alu -7 303 129 3402 107 30 0 chr11 118545314 118545840 -32237713 - Tigger1 DNA MER2_type -1241 1177 636 502 308 19 0 chr11 118545844 118546000 -32237553 - LTR16A LTR ERVL -288 162 4 584 215 97 28 chr11 118546002 118546097 -32237456 + L1MC5 LINE L1 7490 7577 -384 1957 139 21 0 chr11 118546097 118546384 -32237169 + AluJo SINE Alu 1 293 -19 584 215 97 28 chr11 118546384 118546535 -32237018 + L1MC5 LINE L1 7577 7753 -208 2058 170 59 52 chr11 118546597 118547057 -32236496 + MLT1D LTR MaLR 1 463 -42 1747 146 48 10 chr11 118547058 118547353 -32236200 - AluJb SINE Alu -6 306 1 307 255 10 29 chr11 118547399 118547501 -32236052 - L1M4 LINE L1 -1482 4664 4565 1509 155 95 7 chr11 118547707 118547991 -32235562 + AluJb SINE Alu 1 309 -3 2211 128 0 0 chr11 118548313 118548617 -32234936 + AluSx SINE Alu 1 304 -8 1891 86 89 0 chr11 118548911 118549200 -32234353 + AluSg SINE Alu 2 313 0 33 25 0 0 chr11 118549235 118549275 -32234278 + AT_rich Low_complexity Low_complexity 1 40 0 2060 125 7 0 chr11 118550221 118550516 -32233037 + AluSp SINE Alu 1 297 -16 2013 152 3 0 chr11 118550684 118550986 -32232567 - AluJb SINE Alu -9 303 1 25 51 0 0 chr11 118551014 118551053 -32232500 + AT_rich Low_complexity Low_complexity 1 39 0 1210 259 79 11 chr11 118551334 118551689 -32231864 + L2 LINE L2 333 711 -2603 1049 107 0 0 chr11 118551689 118551829 -32231724 + AluSg/x SINE Alu 166 305 -5 400 321 82 36 chr11 118551846 118552235 -32231318 - LTR16C LTR ERVL 0 491 85 1960 236 97 86 chr11 118552351 118552419 -32231134 + L2 LINE L2 719 785 -2529 198 0 0 0 chr11 118552419 118552441 -32231112 + (TC)n Simple_repeat Simple_repeat 2 23 0 2076 122 3 0 chr11 118552441 118552729 -32230824 - AluSx SINE Alu -23 289 1 1960 236 97 86 chr11 118552729 118553597 -32229956 + L2 LINE L2 784 1666 -1648 2987 211 79 81 chr11 118553752 118553998 -32229555 - L1M4 LINE L1 -829 5317 5072 342 0 0 0 chr11 118553998 118554036 -32229517 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2987 211 79 81 chr11 118554036 118554049 -32229504 - L1M4 LINE L1 -1074 5072 5060 2187 113 0 7 chr11 118554049 118554351 -32229202 + AluSx SINE Alu 1 300 -12 2987 211 79 81 chr11 118554351 118554517 -32229036 - L1M4 LINE L1 -1086 5060 4895 2369 72 0 0 chr11 118554517 118554807 -32228746 + AluY SINE Alu 2 291 -20 2987 211 79 81 chr11 118554807 118555315 -32228238 - L1M4 LINE L1 -1251 4895 4387 1738 186 19 3 chr11 118555315 118555622 -32227931 - AluJb SINE Alu 0 312 1 2987 211 79 81 chr11 118555622 118555684 -32227869 - L1M4 LINE L1 -1759 4387 4326 1655 170 62 0 chr11 118555684 118555972 -32227581 - AluJo SINE Alu -6 306 1 2987 211 79 81 chr11 118555972 118556278 -32227275 - L1M4 LINE L1 -1820 4326 4015 413 256 75 12 chr11 118556323 118556483 -32227070 - L1MC/D LINE L1 -2021 5787 5618 1599 182 50 4 chr11 118556554 118556834 -32226719 + AluJo SINE Alu 1 293 -19 1512 78 59 9 chr11 118556927 118557146 -32226407 - MER30 DNA MER1_type 0 230 1 232 317 48 0 chr11 118557635 118557802 -32225751 + L1MCc LINE L1 1290 1464 -4959 * 2866 187 40 50 chr11 118557800 118557958 -32225595 + L1MB4 LINE L1 5430 5588 -592 794 59 0 0 chr11 118557958 118558059 -32225494 + HY3 scRNA scRNA 1 101 0 2866 187 40 50 chr11 118558059 118558628 -32224925 + L1MB4 LINE L1 5588 6150 -30 1594 163 30 52 chr11 118558656 118559025 -32224528 + L1MB8 LINE L1 5814 6174 -4 351 261 115 31 chr11 118559101 118559361 -32224192 + L1MCc LINE L1 1951 2232 -4890 575 204 0 9 chr11 118559373 118559486 -32224067 + FLAM_A SINE Alu 20 131 -11 825 262 68 17 chr11 118559607 118559901 -32223652 + Charlie2 DNA MER1_type 16 324 -2538 275 169 92 15 chr11 118559919 118559984 -32223569 + Charlie2 DNA MER1_type 1873 1942 -920 868 202 154 47 chr11 118560067 118560553 -32223000 + Charlie2 DNA MER1_type 1969 2506 -356 347 150 17 0 chr11 118560540 118560600 -32222953 + AluYb8 SINE Alu 120 180 -128 * 22 0 0 0 chr11 118560639 118560661 -32222892 + AT_rich Low_complexity Low_complexity 1 22 0 2163 115 0 10 chr11 118560725 118561029 -32222524 + AluSq SINE Alu 1 301 -12 335 256 0 16 chr11 118561058 118561183 -32222370 + Charlie2 DNA MER1_type 2575 2697 -165 718 237 41 6 chr11 118561292 118561383 -32222170 + MER96 DNA MER1_type 1 175 0 279 269 64 0 chr11 118561383 118561461 -32222092 - MER96 DNA MER1_type? -92 83 1 2204 129 0 0 chr11 118562803 118563098 -32220455 + AluSx SINE Alu 1 295 -17 2237 98 0 10 chr11 118563252 118563557 -32219996 + AluY SINE Alu 1 302 -9 620 229 114 0 chr11 118563882 118564057 -32219496 - Tigger6 DNA MER2_type -13 1584 1390 1410 207 44 11 chr11 118564200 118564352 -32219201 - AluJo SINE Alu -30 282 116 282 73 0 0 chr11 118564352 118564393 -32219160 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 1410 207 44 11 chr11 118564393 118564511 -32219042 - AluJo SINE Alu -196 116 3 1016 180 0 0 chr11 118564511 118564678 -32218875 - FRAM SINE Alu -11 165 1 192 125 0 0 chr11 118564686 118564718 -32218835 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 533 156 135 0 chr11 118564720 118564816 -32218737 - FLAM_C SINE Alu -21 122 14 481 171 34 0 chr11 118565468 118565556 -32217997 + FRAM SINE Alu 65 155 -21 473 221 34 94 chr11 118565567 118565664 -32217889 - L1M4 LINE L1 -830 5316 5215 2042 118 23 20 chr11 118565664 118565968 -32217585 + AluSx SINE Alu 1 305 -7 473 221 34 94 chr11 118565968 118566105 -32217448 - L1M4 LINE L1 -931 5215 5096 293 298 29 39 chr11 118566827 118566931 -32216622 + MIR SINE MIR 8 110 -152 783 210 6 49 chr11 118566963 118567145 -32216408 + FRAM SINE Alu 1 170 0 274 218 90 0 chr11 118567148 118567226 -32216327 + MIR SINE MIR 148 232 -30 382 267 60 27 chr11 118567550 118567700 -32215853 + L2 LINE L2 824 978 -2336 297 259 82 7 chr11 118567711 118567846 -32215707 - L1MDa LINE L1 -4915 1300 1156 2448 272 49 17 chr11 118567858 118568679 -32214874 - L1MDa LINE L1 -5400 996 150 348 203 0 0 chr11 118568685 118568754 -32214799 - L1MDa LINE L1 -6293 103 35 4028 279 108 37 chr11 118568754 118569407 -32214146 + L2 LINE L2 975 1580 -1733 2350 97 0 0 chr11 118569407 118569706 -32213847 + AluSg SINE Alu 1 299 -11 4028 279 108 37 chr11 118569706 118569821 -32213732 + L2 LINE L2 1580 1685 -1628 1560 129 115 31 chr11 118569821 118569972 -32213581 - AluJb SINE Alu -1 311 174 2085 131 7 0 chr11 118569972 118570270 -32213283 - AluSx SINE Alu -12 300 1 1560 129 115 31 chr11 118570270 118570405 -32213148 - AluJb SINE Alu -138 174 1 4028 279 108 37 chr11 118570405 118571255 -32212298 + L2 LINE L2 1685 2743 -570 2082 107 45 0 chr11 118571255 118571544 -32212009 + AluSg SINE Alu 1 302 -8 4028 279 108 37 chr11 118571544 118571822 -32211731 + L2 LINE L2 2743 3000 -313 21 0 0 0 chr11 118572602 118572623 -32210930 + AT_rich Low_complexity Low_complexity 1 21 0 2325 102 3 0 chr11 118573054 118573357 -32210196 + AluSp SINE Alu 1 304 -9 180 331 17 83 chr11 118573463 118573644 -32209909 + MER5A DNA MER1_type 3 171 -18 2026 143 10 0 chr11 118573786 118574079 -32209474 + AluSx SINE Alu 3 298 -14 1512 170 21 7 chr11 118574121 118574403 -32209150 - L1P LINE L1 -1122 5024 4739 3664 67 31 0 chr11 118574403 118574879 -32208674 + L1PA12 LINE L1 5674 6168 0 1840 163 0 3 chr11 118574932 118575226 -32208327 + AluJo SINE Alu 10 302 -10 189 0 0 0 chr11 118575280 118575301 -32208252 + (TC)n Simple_repeat Simple_repeat 2 22 0 403 269 55 28 chr11 118575326 118575563 -32207990 - L1M4 LINE L1 -2302 3844 3600 1220 255 43 58 chr11 118575664 118576002 -32207551 - MER77 LTR ERV1 -6 599 277 2664 176 82 10 chr11 118576734 118577235 -32206318 - MER68 LTR ERV1 -4 558 22 8115 207 62 40 chr11 118577237 118578153 -32205400 - HERVL68 LTR ERVL -662 2375 1480 1686 141 10 61 chr11 118578153 118578466 -32205087 + AluJo SINE Alu 1 297 -15 8115 207 62 40 chr11 118578466 118579178 -32204375 - HERVL68 LTR ERVL -1557 1480 785 1968 144 7 3 chr11 118579178 118579477 -32204076 - AluSq SINE Alu -13 300 1 8115 207 62 40 chr11 118579477 118580065 -32203488 - HERVL68 LTR ERVL -2252 785 31 2641 227 21 2 chr11 118580089 118580622 -32202931 - MER68 LTR ERV1 0 562 20 2102 115 45 0 chr11 118581104 118581392 -32202161 + AluSq SINE Alu 1 301 -12 37 23 0 0 chr11 118581719 118581763 -32201790 + AT_rich Low_complexity Low_complexity 1 44 0 241 335 110 32 chr11 118581953 118581972 -32201581 - L2 LINE L2 -7 3265 3249 1728 163 19 36 chr11 118581972 118582279 -32201274 + AluJo SINE Alu 1 302 -10 241 335 110 32 chr11 118582279 118582414 -32201139 - L2 LINE L2 -23 3249 3099 2240 132 28 110 chr11 118582862 118582943 -32200610 + MLT1C LTR MaLR 1 87 -380 2261 108 3 29 chr11 118582943 118583259 -32200294 + AluSx SINE Alu 1 308 -4 2240 132 28 110 chr11 118583259 118583686 -32199867 + MLT1C LTR MaLR 87 467 0 966 128 6 11 chr11 118584058 118584237 -32199316 + (TTC)n Simple_repeat Simple_repeat 2 179 0 740 176 0 8 chr11 118584240 118584359 -32199194 - FLAM_C SINE Alu -15 118 1 2185 118 7 0 chr11 118585020 118585317 -32198236 - AluSx SINE Alu -12 300 2 2124 93 79 0 chr11 118585821 118586100 -32197453 + AluSx SINE Alu 1 301 -11 2188 98 0 39 chr11 118586645 118586815 -32196738 - AluSq SINE Alu -20 293 139 2342 98 0 7 chr11 118586815 118587120 -32196433 - AluSg SINE Alu -7 303 1 2188 98 0 39 chr11 118587120 118587254 -32196299 - AluSq SINE Alu -174 139 1 2449 69 16 0 chr11 118587265 118587568 -32195985 - AluSp SINE Alu -5 308 1 207 0 0 0 chr11 118587806 118587829 -32195724 + (T)n Simple_repeat Simple_repeat 1 23 0 1442 142 9 0 chr11 118588057 118588275 -32195278 + AluJo SINE Alu 1 220 -92 699 168 76 92 chr11 118588275 118588460 -32195093 + AluJo SINE Alu 86 267 -45 21 0 0 0 chr11 118588872 118588893 -32194660 + GC_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr11 118589889 118589918 -32193635 + (TG)n Simple_repeat Simple_repeat 1 29 0 262 155 99 56 chr11 118590688 118590759 -32192794 + MIR3 SINE MIR 126 199 -9 2182 110 0 0 chr11 118590981 118591288 -32192265 + AluSg SINE Alu 1 307 0 2364 74 3 19 chr11 118591374 118591684 -32191869 - AluSp SINE Alu -8 305 1 2001 143 19 10 chr11 118592261 118592568 -32190985 - AluJb SINE Alu -2 310 1 312 306 100 29 chr11 118592708 118592878 -32190675 - MLT1J LTR MaLR -38 473 292 1684 152 11 7 chr11 118593121 118593391 -32190162 - AluSg SINE Alu -14 296 26 333 0 0 0 chr11 118593719 118593756 -32189797 + (TG)n Simple_repeat Simple_repeat 2 38 0 1997 125 37 7 chr11 118593776 118594072 -32189481 - AluSx SINE Alu -2 310 6 2154 86 72 0 chr11 118594082 118594361 -32189192 - AluSq SINE Alu -14 299 1 536 197 109 0 chr11 118594384 118594521 -32189032 - MER103 DNA DNA -2 164 13 1747 169 10 29 chr11 118594551 118594859 -32188694 + AluJo SINE Alu 1 302 -10 2500 78 0 3 chr11 118595050 118595356 -32188197 + AluSq SINE Alu 1 305 -8 3480 122 53 31 chr11 118595509 118595768 -32187785 - MER41C LTR ERV1 0 554 302 2405 87 0 6 chr11 118595768 118596080 -32187473 - AluY SINE Alu -1 310 1 3480 122 53 31 chr11 118596080 118596304 -32187249 - MER41C LTR ERV1 -252 302 55 2153 117 27 0 chr11 118596304 118596602 -32186951 - AluSx SINE Alu -5 307 2 3480 122 53 31 chr11 118596602 118596659 -32186894 - MER41C LTR ERV1 -499 55 1 1540 109 0 50 chr11 118597126 118597364 -32186189 + AluSg/x SINE Alu 82 307 -3 1671 164 33 46 chr11 118597538 118597843 -32185710 - AluJo SINE Alu -11 301 1 1353 74 0 0 chr11 118597943 118598105 -32185448 - AluSg/x SINE Alu -16 296 135 2456 76 10 0 chr11 118598484 118598787 -32184766 + AluSx SINE Alu 1 306 -6 1985 147 0 19 chr11 118598856 118599169 -32184384 + AluJb SINE Alu 6 312 0 2041 125 0 7 chr11 118599379 118599667 -32183886 + AluSx SINE Alu 17 302 -10 2460 55 16 29 chr11 118599728 118600040 -32183513 + AluY SINE Alu 1 308 -3 25 0 0 0 chr11 118600471 118600496 -32183057 + AT_rich Low_complexity Low_complexity 1 25 0 1882 153 7 0 chr11 118600660 118600954 -32182599 - AluSx SINE Alu -3 309 14 2101 112 3 10 chr11 118601094 118601388 -32182165 + AluSc SINE Alu 1 292 -17 405 161 313 18 chr11 118601567 118601679 -32181874 + MER103 DNA DNA 2 146 -20 2221 109 0 19 chr11 118602214 118602525 -32181028 + AluSx SINE Alu 1 305 -7 652 117 0 0 chr11 118602802 118602896 -32180657 - AluJo SINE Alu -16 296 203 * 751 128 48 16 chr11 118602892 118603017 -32180536 - AluJo SINE Alu -173 139 11 243 308 120 0 chr11 118603026 118603143 -32180410 - MIR SINE MIR -62 146 16 2470 80 0 0 chr11 118603693 118603995 -32179558 + AluY SINE Alu 1 302 -9 2244 118 0 0 chr11 118604216 118604513 -32179040 + AluSx SINE Alu 1 297 -15 595 238 79 46 chr11 118604552 118604806 -32178747 - MLT1J LTR MaLR -164 282 52 911 84 76 0 chr11 118604863 118604982 -32178571 - AluSg/x SINE Alu -76 236 109 579 305 67 47 chr11 118605209 118605385 -32178168 - MERVL LTR ERVL -2320 3165 2994 2187 96 3 26 chr11 118605385 118605688 -32177865 + AluSp SINE Alu 14 309 -4 579 305 67 47 chr11 118605688 118605852 -32177701 - MERVL LTR ERVL -2491 2994 2818 251 326 31 0 chr11 118606089 118606187 -32177366 - L2 LINE L2 0 3272 3172 923 336 145 24 chr11 118606479 118607314 -32176239 - L2 LINE L2 -2041 1273 338 201 188 0 42 chr11 118607607 118607655 -32175898 + CT-rich Low_complexity Low_complexity 3 48 0 2248 108 14 0 chr11 118607706 118608003 -32175550 - AluSx SINE Alu -7 305 5 2117 126 0 0 chr11 118608653 118608962 -32174591 + AluSq SINE Alu 1 309 0 2391 78 0 3 chr11 118609749 118610042 -32173511 + AluSc SINE Alu 5 296 -13 244 372 37 19 chr11 118610133 118610348 -32173205 - L2 LINE L2 -145 3127 2909 1538 292 70 8 chr11 118610362 118610845 -32172708 - LTR33 LTR ERVL -8 513 1 1595 167 32 57 chr11 118610939 118611310 -32172243 - MLT1A1 LTR MaLR 0 365 4 1761 166 3 20 chr11 118612887 118613183 -32170370 - AluSx SINE Alu -19 293 3 294 283 192 8 chr11 118613727 118613847 -32169706 + MIR3 SINE MIR 5 146 -62 1365 160 7 82 chr11 118614138 118614432 -32169121 - AluJb SINE Alu -37 275 4 21 0 0 0 chr11 118615213 118615234 -32168319 + AT_rich Low_complexity Low_complexity 1 21 0 35 41 0 0 chr11 118615486 118615535 -32168018 + AT_rich Low_complexity Low_complexity 1 49 0 189 26 51 26 chr11 118615590 118615629 -32167924 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1011 152 0 0 chr11 118615630 118615775 -32167778 - AluSg/x SINE Alu -32 280 136 351 0 0 0 chr11 118615776 118615815 -32167738 + (TTA)n Simple_repeat Simple_repeat 2 40 0 2225 74 0 37 chr11 118615818 118616116 -32167437 - AluSp SINE Alu -26 287 1 2344 66 0 30 chr11 118616598 118616900 -32166653 + AluY SINE Alu 1 293 -18 916 178 6 6 chr11 118617102 118617271 -32166282 - FRAM SINE Alu -7 169 1 252 0 0 0 chr11 118617990 118618018 -32165535 + (T)n Simple_repeat Simple_repeat 1 28 0 363 194 0 0 chr11 118618020 118618092 -32165461 - LTR12 LTR ERV1 -352 362 291 877 175 95 14 chr11 118618233 118618444 -32165109 - MER46C DNA MER2_type -98 240 13 221 186 23 0 chr11 118618619 118618662 -32164891 + MIR SINE MIR 191 234 -28 2347 83 0 3 chr11 118618664 118618970 -32164583 - AluSq SINE Alu 0 305 1 330 141 39 39 chr11 118619361 118619439 -32164114 - L1MB8 LINE L1 0 6178 6101 1008 198 0 16 chr11 118619471 118619658 -32163895 + AluJo SINE Alu 1 184 -128 471 127 13 13 chr11 118619661 118619740 -32163813 - MSTB LTR MaLR -347 79 1 1001 137 67 115 chr11 118619740 118619942 -32163611 - L1MB8 LINE L1 -67 6111 5924 2762 154 41 6 chr11 118619942 118620410 -32163143 + MER66B LTR ERV1 3 486 0 1001 137 67 115 chr11 118620410 118620477 -32163076 - L1MB8 LINE L1 -254 5924 5855 2206 125 3 0 chr11 118620487 118620784 -32162769 + AluSx SINE Alu 1 298 -14 278 181 0 14 chr11 118620818 118620890 -32162663 - L1ME4a LINE L1 -4 6117 6047 2240 104 17 0 chr11 118621026 118621324 -32162229 - AluSx SINE Alu 0 312 10 298 268 0 0 chr11 118621343 118621414 -32162139 - MIR SINE MIR -125 137 67 184 246 63 114 chr11 118621485 118621660 -32161893 - MER5B DNA MER1_type -6 172 7 2334 94 3 3 chr11 118621831 118622130 -32161423 - AluSp SINE Alu -14 299 1 291 263 67 31 chr11 118622169 118622363 -32161190 - L1ME4a LINE L1 -82 6039 5839 380 148 0 0 chr11 118622420 118622481 -32161072 + LTR64 LTR ERVK 15 75 -483 1741 176 23 20 chr11 118622521 118622827 -32160726 + AluSx SINE Alu 6 312 0 301 268 52 66 chr11 118623075 118623180 -32160373 - L1MC4 LINE L1 -1 8041 7936 294 29 0 0 chr11 118623180 118623215 -32160338 + (TA)n Simple_repeat Simple_repeat 2 36 0 2393 87 0 3 chr11 118623216 118623515 -32160038 - AluSq SINE Alu -15 298 1 301 268 52 66 chr11 118623515 118623620 -32159933 - L1MC4 LINE L1 -105 7937 7832 642 188 55 0 chr11 118623684 118623812 -32159741 - AluJo SINE Alu -177 135 1 490 215 19 0 chr11 118623812 118623919 -32159634 - L1ME2 LINE L1 -33 6131 6023 21 71 0 0 chr11 118623986 118624028 -32159525 + AT_rich Low_complexity Low_complexity 1 42 0 248 313 115 11 chr11 118624033 118624215 -32159338 - L2 LINE L2 -2269 1045 845 2189 84 37 3 chr11 118624343 118624640 -32158913 - AluSx SINE Alu -1 311 5 249 62 0 0 chr11 118624644 118624676 -32158877 - Alu SINE Alu -267 32 1 220 349 24 0 chr11 118624740 118624823 -32158730 + L2 LINE L2 3179 3263 -50 303 225 146 0 chr11 118625119 118625208 -32158345 - FLAM_C SINE Alu 0 133 32 180 267 0 0 chr11 118625272 118625317 -32158236 - L2 LINE L2 -7 3265 3221 298 86 3 0 chr11 118626828 118626872 -32156681 + MADE1 DNA Mariner 42 80 0 487 268 184 16 chr11 118627085 118627275 -32156278 + MIR SINE MIR 28 249 -13 423 176 0 0 chr11 118627407 118627475 -32156078 + AluJ/FLAM SINE Alu 2 69 -243 246 195 0 0 chr11 118627531 118627572 -32155981 + AluJ/FLAM SINE Alu 74 114 -52 2371 86 0 19 chr11 118628202 118628515 -32155038 - AluSc SINE Alu -2 307 1 2286 104 0 3 chr11 118629187 118629485 -32154068 - AluSq SINE Alu -16 297 1 656 179 114 0 chr11 118630376 118630499 -32153054 + FLAM_C SINE Alu 2 138 -5 795 294 36 30 chr11 118631311 118631488 -32152065 - L2 LINE L2 -69 3244 3063 2189 124 0 0 chr11 118631488 118631787 -32151766 - AluSx SINE Alu -13 299 1 795 294 36 30 chr11 118631787 118631942 -32151611 - L2 LINE L2 -250 3063 2910 1614 173 39 7 chr11 118632505 118632789 -32150764 - AluJb SINE Alu -5 307 15 204 40 0 0 chr11 118632816 118632841 -32150712 + (TTCTC)n Simple_repeat Simple_repeat 1 25 0 1283 204 66 7 chr11 118632844 118633133 -32150420 - AluJb SINE Alu -1 311 6 700 183 76 0 chr11 118633268 118633399 -32150154 + FLAM_C SINE Alu 2 142 -1 651 173 87 16 chr11 118633440 118633567 -32149986 + AluJo SINE Alu 2 137 -175 253 322 66 62 chr11 118633635 118633695 -32149858 - L2 LINE L2 -1 3312 3254 1877 161 7 10 chr11 118633695 118633999 -32149554 + AluJb SINE Alu 1 303 -9 253 322 66 62 chr11 118633999 118634149 -32149404 - L2 LINE L2 -59 3254 3101 1945 155 10 0 chr11 118634156 118634446 -32149107 + AluJo SINE Alu 1 293 -19 243 208 94 30 chr11 118634700 118634862 -32148691 - L2 LINE L2 -224 3089 2866 398 247 0 0 chr11 118634900 118634973 -32148580 - MER2 DNA MER2_type 0 345 273 2062 120 0 27 chr11 118634973 118635272 -32148281 + AluSx SINE Alu 1 291 -21 263 103 98 3 chr11 118635377 118635572 -32147981 + AluSx SINE Alu 3 264 -38 2380 229 68 72 chr11 118635577 118635678 -32147875 + HAL1 LINE L1 1075 1175 -1332 2373 77 0 20 chr11 118635678 118635976 -32147577 - AluY SINE Alu -19 292 1 2380 229 68 72 chr11 118635976 118636541 -32147012 + HAL1 LINE L1 1175 1738 -769 255 61 0 0 chr11 118636541 118636574 -32146979 + (CA)n Simple_repeat Simple_repeat 2 34 0 2380 229 68 72 chr11 118636574 118636877 -32146676 + HAL1 LINE L1 1738 2041 -466 357 230 74 30 chr11 118636883 118637018 -32146535 + MLT1J1 LTR MaLR 1 141 -305 718 96 0 42 chr11 118637080 118637309 -32146244 - AluSc SINE Alu -30 279 1 474 278 6 30 chr11 118637340 118637509 -32146044 - HAL1 LINE L1 -280 2227 2063 347 158 35 0 chr11 118637531 118637588 -32145965 - MLT1I LTR MaLR -2 407 349 1944 131 44 0 chr11 118637609 118637907 -32145646 + AluSx SINE Alu 1 311 -1 2438 68 0 26 chr11 118638460 118638771 -32144782 + AluY SINE Alu 1 303 -8 420 301 56 15 chr11 118638968 118639056 -32144497 - L2 LINE L2 0 3313 3230 2098 133 3 0 chr11 118639056 118639358 -32144195 + AluJb SINE Alu 3 305 -7 420 301 56 15 chr11 118639358 118639465 -32144088 - L2 LINE L2 -83 3230 3110 901 193 6 6 chr11 118640187 118640353 -32143200 - FRAM SINE Alu 0 166 1 1877 155 32 55 chr11 118640743 118640869 -32142684 + L1MB1 LINE L1 5764 5891 -277 2205 123 3 0 chr11 118640869 118641169 -32142384 + AluSq SINE Alu 1 301 -12 2392 97 0 10 chr11 118641169 118641480 -32142073 + AluSc SINE Alu 1 308 -1 1877 155 32 55 chr11 118641480 118641753 -32141800 + L1MB1 LINE L1 5889 6155 -13 1352 324 31 24 chr11 118642057 118642638 -32140915 - ERVL LTR ERVL -732 5032 4448 308 306 86 4 chr11 118642696 118642950 -32140603 - ERVL LTR ERVL -1372 4282 4016 504 282 8 0 chr11 118643420 118643537 -32140016 - ERVL LTR ERVL -2088 3397 3280 1900 166 3 3 chr11 118643865 118644160 -32139393 - AluJo SINE Alu -17 295 1 338 305 128 14 chr11 118644975 118645116 -32138437 + L2 LINE L2 3107 3263 -9 224 57 0 29 chr11 118645466 118645501 -32138052 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 365 232 120 7 chr11 118645774 118645916 -32137637 - L1ME4a LINE L1 -1 6120 5963 226 289 139 52 chr11 118645944 118646117 -32137436 + MIR SINE MIR 5 192 -70 2350 102 3 0 chr11 118646123 118646428 -32137125 + AluSx SINE Alu 1 306 -6 2332 73 0 11 chr11 118646569 118646896 -32136657 - AluY SINE Alu 0 324 1 197 333 80 65 chr11 118646935 118647211 -32136342 + L2 LINE L2 2454 2733 -581 198 167 0 0 chr11 118647275 118647311 -32136242 + (TG)n Simple_repeat Simple_repeat 2 37 0 986 274 60 87 chr11 118647916 118648214 -32135339 - MLT1J LTR MaLR -2 509 229 1819 137 13 30 chr11 118648214 118648513 -32135040 - AluJb SINE Alu -18 294 1 986 274 60 87 chr11 118648513 118648733 -32134820 - MLT1J LTR MaLR -282 229 5 210 218 55 18 chr11 118648934 118648989 -32134564 + L2 LINE L2 3211 3267 -5 2051 207 41 42 chr11 118649054 118649682 -32133871 + L1MD2 LINE L1 4832 5458 -745 501 121 24 12 chr11 118649682 118649765 -32133788 + MER4A LTR ERV1 1 84 -580 2615 153 120 5 chr11 118649765 118650267 -32133286 + L1MD2 LINE L1 5768 8026 -16 2119 92 36 20 chr11 118650499 118650803 -32132750 - AluSc SINE Alu 0 309 1 21 0 0 0 chr11 118650972 118650993 -32132560 + AT_rich Low_complexity Low_complexity 1 21 0 1158 189 77 93 chr11 118651267 118651402 -32132151 + MLT1B LTR MaLR 31 167 -223 1702 186 0 22 chr11 118651402 118651714 -32131839 + AluJo SINE Alu 1 305 -7 1158 189 77 93 chr11 118651714 118651727 -32131826 + MLT1B LTR MaLR 167 179 -211 2241 96 10 0 chr11 118651727 118652018 -32131535 + AluSp SINE Alu 1 294 -19 1158 189 77 93 chr11 118652018 118652233 -32131320 + MLT1B LTR MaLR 179 389 -1 302 208 271 7 chr11 118652709 118652853 -32130700 - MER5A DNA MER1_type -1 188 7 284 325 26 17 chr11 118652868 118652985 -32130568 + L2 LINE L2 3151 3268 -4 198 299 17 77 chr11 118653143 118653260 -32130293 - MIR SINE MIR -64 198 89 2420 97 6 0 chr11 118654105 118654416 -32129137 - AluSq SINE Alu 0 313 1 222 254 100 83 chr11 118655104 118655164 -32128389 + MIR SINE MIR 8 66 -196 599 77 13 0 chr11 118655164 118655242 -32128311 + MADE1 DNA Mariner 2 80 0 222 254 100 83 chr11 118655242 118655421 -32128132 + MIR SINE MIR 66 251 -11 438 267 17 0 chr11 118656011 118656127 -32127426 - MER94 DNA DNA -15 119 2 234 0 0 0 chr11 118656423 118656449 -32127104 + (CA)n Simple_repeat Simple_repeat 2 27 0 2413 60 0 3 chr11 118658087 118658424 -32125129 - AluSc SINE Alu 0 336 1 1077 162 32 0 chr11 118659944 118660129 -32123424 + AluJb SINE Alu 121 311 -1 201 208 42 0 chr11 118660189 118660237 -32123316 + MIR SINE MIR 28 77 -185 699 174 0 76 chr11 118660597 118660741 -32122812 - FLAM_A SINE Alu 0 133 1 833 163 0 0 chr11 118661077 118661206 -32122347 + AluJo SINE Alu 2 130 -172 1645 118 133 0 chr11 118661206 118661461 -32122092 - AluSx SINE Alu -12 290 2 2557 69 3 0 chr11 118661471 118661776 -32121777 - AluSp SINE Alu -7 306 1 1101 142 0 11 chr11 118661792 118661968 -32121585 + AluJo SINE Alu 132 305 -7 250 277 121 42 chr11 118663344 118663510 -32120043 - MIR SINE MIR -70 192 14 1019 122 0 0 chr11 118664186 118664325 -32119228 - AluJb SINE Alu -173 139 1 435 134 0 0 chr11 118664394 118664461 -32119092 + (TCCA)n Simple_repeat Simple_repeat 1 67 0 250 158 123 35 chr11 118664470 118664527 -32119026 - L2 LINE L2 -18 3295 3234 282 310 56 43 chr11 118664565 118664797 -32118756 + L2 LINE L2 2169 2403 -911 207 257 66 88 chr11 118664992 118665128 -32118425 + L2 LINE L2 2939 3071 -201 2108 119 3 0 chr11 118665155 118665448 -32118105 - AluSx SINE Alu -17 295 2 460 235 116 62 chr11 118665773 118666551 -32117002 - HAL1 LINE L1 0 2507 1773 195 42 0 0 chr11 118666551 118666575 -32116978 + (ATTG)n Simple_repeat Simple_repeat 4 27 0 1586 153 65 4 chr11 118666575 118666837 -32116716 - AluJo SINE Alu -32 280 3 460 235 116 62 chr11 118666837 118667285 -32116268 - HAL1 LINE L1 -733 1774 1084 201 74 0 0 chr11 118667586 118667613 -32115940 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 324 90 56 11 chr11 118667612 118667701 -32115852 + (TA)n Simple_repeat Simple_repeat 2 94 0 2215 114 0 0 chr11 118667703 118667992 -32115561 - AluSx SINE Alu -22 290 2 1952 101 11 18 chr11 118668224 118668510 -32115043 + MER41B LTR ERV1 267 550 -85 234 0 0 0 chr11 118668510 118668536 -32115017 + (A)n Simple_repeat Simple_repeat 1 26 0 698 269 22 26 chr11 118668739 118668966 -32114587 + AluJo SINE Alu 63 288 -24 332 271 47 0 chr11 118668966 118669051 -32114502 + L1MC4 LINE L1 6615 6703 -1339 327 315 0 0 chr11 118668971 118669060 -32114493 - L1MC4 LINE L1 -1339 6703 6615 * 243 188 0 0 chr11 118669061 118669109 -32114444 + (TATATG)n Simple_repeat Simple_repeat 2 49 0 236 217 96 0 chr11 118669118 118669201 -32114352 + L1MC4 LINE L1 6615 6705 -1337 1664 262 40 62 chr11 118669307 118670050 -32113503 - L1MC4 LINE L1 0 8042 7316 1126 164 0 51 chr11 118670219 118670433 -32113120 + AluJo SINE Alu 1 203 -109 2431 51 0 0 chr11 118671283 118671575 -32111978 + AluY SINE Alu 1 292 -19 2175 105 13 0 chr11 118672740 118673045 -32110508 + AluSc SINE Alu 1 309 0 1161 190 5 23 chr11 118673153 118673374 -32110179 - AluJb SINE Alu -9 303 87 2073 125 3 7 chr11 118673408 118673713 -32109840 - AluSx SINE Alu -7 305 2 210 315 102 37 chr11 118674316 118674424 -32109129 + L2 LINE L2 3191 3305 -8 1591 128 164 55 chr11 118675164 118675360 -32108193 - MER47A DNA MER2_type -1957 366 193 2063 142 0 3 chr11 118675360 118675671 -32107882 - AluSq SINE Alu -3 310 1 1591 128 164 55 chr11 118675671 118675803 -32107750 - MER47A DNA MER2_type -2130 193 2 7150 151 22 18 chr11 118676097 118677689 -32105864 - L1MA4A LINE L1 -26 6265 4633 2016 143 0 6 chr11 118677689 118678003 -32105550 - AluSx SINE Alu 0 312 1 7150 151 22 18 chr11 118678003 118678643 -32104910 - L1MA4A LINE L1 -1658 4633 3997 702 246 46 32 chr11 118678699 118678983 -32104570 - L1ME LINE L1 -302 5819 5532 2434 82 0 7 chr11 118679156 118679460 -32104093 - AluY SINE Alu -7 304 3 230 231 0 31 chr11 118679475 118679540 -32104013 + (TATATG)n Simple_repeat Simple_repeat 1 63 0 36674 93 12 4 chr11 118679796 118685889 -32097664 + L1PA5 LINE L1 12 6151 -3 24 67 0 0 chr11 118685889 118685934 -32097619 + AT_rich Low_complexity Low_complexity 1 45 0 360 91 30 76 chr11 118685950 118686016 -32097537 - Tigger3(Golem) DNA MER2_type -2927 102 40 814 291 89 3 chr11 118686049 118686365 -32097188 - L1MC4 LINE L1 -1024 7018 6676 285 141 141 59 chr11 118686379 118686464 -32097089 - L1MC5 LINE L1 -600 7361 7270 1350 178 19 8 chr11 118686510 118686769 -32096784 + MER82 DNA MER2_type 3 264 -389 1885 151 4 0 chr11 118686814 118687092 -32096461 + AluJb SINE Alu 6 284 -28 762 284 34 14 chr11 118687097 118687305 -32096248 + MER82 DNA MER2_type 442 653 0 595 193 33 20 chr11 118687516 118687666 -32095887 + MER96B DNA MER1_type? 135 286 -131 246 62 0 0 chr11 118687683 118687715 -32095838 + (TA)n Simple_repeat Simple_repeat 2 33 0 232 204 0 0 chr11 118687733 118687777 -32095776 + MER82 DNA MER2_type 53 96 -557 792 155 28 0 chr11 118687781 118687923 -32095630 - MER82 DNA MER2_type -454 199 54 26 50 0 0 chr11 118687944 118687984 -32095569 + AT_rich Low_complexity Low_complexity 1 40 0 422 188 0 0 chr11 118687984 118688048 -32095505 - AluJ/FRAM SINE Alu -27 285 222 335 155 17 0 chr11 118688064 118688122 -32095431 - MER96B DNA MER1_type? -358 59 1 201 167 0 0 chr11 118688404 118688440 -32095113 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 4339 225 37 28 chr11 118688638 118690060 -32093493 + L1MEc LINE L1 1867 3266 -2949 2302 99 0 3 chr11 118690060 118690372 -32093181 + AluY SINE Alu 1 311 0 4339 225 37 28 chr11 118690372 118690481 -32093072 + L1MEc LINE L1 3266 3372 -2843 1224 238 77 42 chr11 118690560 118690989 -32092564 + MLT1C LTR MaLR 22 465 -2 827 237 60 8 chr11 118690992 118691258 -32092295 + L1MEc LINE L1 4047 4326 -1889 1902 230 40 23 chr11 118691261 118691787 -32091766 + L1MEc LINE L1 4824 5358 -857 1850 183 14 22 chr11 118691787 118692153 -32091400 + MLT1A2 LTR MaLR 1 363 -11 3842 188 33 35 chr11 118692159 118693056 -32090497 + L1MB8 LINE L1 5283 6178 0 1923 95 3 92 chr11 118693065 118693381 -32090172 + AluSg SINE Alu 1 288 -22 555 335 43 23 chr11 118693382 118693942 -32089611 - L1 LINE L1 -2037 4313 3724 2146 128 40 68 chr11 118694108 118694552 -32089001 + MSTB1 LTR MaLR 1 432 0 2064 125 0 0 chr11 118695774 118696055 -32087498 + AluSx SINE Alu 20 300 -12 1812 174 3 7 chr11 118696381 118696691 -32086862 - AluJo SINE Alu -3 309 1 704 264 84 54 chr11 118697255 118697656 -32085897 - MLT1J1 LTR MaLR -15 496 2 314 378 94 41 chr11 118699363 118700080 -32083473 - L2 LINE L2 -218 3054 2305 228 35 0 0 chr11 118700100 118700129 -32083424 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 528 272 108 49 chr11 118701445 118701641 -32081912 + HAL1b LINE L1 149 332 -1016 2551 65 0 0 chr11 118701641 118701949 -32081604 - AluY SINE Alu -3 308 1 528 272 108 49 chr11 118701949 118702389 -32081164 + HAL1b LINE L1 332 823 -525 406 328 64 51 chr11 118702712 118702893 -32080660 + L1M4 LINE L1 2205 2382 -3764 2017 119 10 26 chr11 118702893 118703196 -32080357 - AluSq SINE Alu -15 298 1 406 328 64 51 chr11 118703196 118703389 -32080164 + L1M4 LINE L1 2382 2584 -3562 4282 230 79 35 chr11 118703601 118704703 -32078850 - L1 LINE L1 -2723 3627 2575 2254 79 62 0 chr11 118704703 118704994 -32078559 - AluSc SINE Alu 0 309 1 4282 230 79 35 chr11 118704994 118706963 -32076590 - L1 LINE L1 -3775 2575 731 271 270 50 34 chr11 118707645 118707794 -32075759 - L1 LINE L1 -5991 290 1 537 224 0 9 chr11 118707820 118707927 -32075626 + MLT1E LTR MaLR 9 114 -479 3224 138 45 2 chr11 118707929 118708437 -32075116 - MER44D DNA MER2_type 0 605 204 1793 251 111 43 chr11 118708443 118709112 -32074441 - L1MEc LINE L1 -5640 756 43 731 229 86 148 chr11 118709588 118710100 -32073453 + MLT1H1 LTR MaLR 35 514 -41 282 282 42 0 chr11 118710109 118710180 -32073373 + L2 LINE L2 3229 3302 -11 1709 294 116 19 chr11 118710206 118710964 -32072589 - L2 LINE L2 -1126 2188 1357 265 404 96 0 chr11 118711024 118711180 -32072373 + L2 LINE L2 3102 3272 0 2176 52 6 76 chr11 118711419 118711749 -32071804 + L1PA7 LINE L1 5844 6150 -4 977 195 0 0 chr11 118712029 118712203 -32071350 + FRAM SINE Alu 2 175 -1 203 130 22 22 chr11 118713843 118713889 -32069664 + A-rich Low_complexity Low_complexity 4 49 0 881 225 86 0 chr11 118715492 118715679 -32067874 + MIR SINE MIR 59 261 -1 210 236 0 0 chr11 118716614 118716669 -32066884 + CT-rich Low_complexity Low_complexity 2 56 0 270 0 0 0 chr11 118716686 118716716 -32066837 + (CA)n Simple_repeat Simple_repeat 1 30 0 292 277 60 0 chr11 118717224 118717307 -32066246 + MIR SINE MIR 35 122 -140 2130 193 78 2 chr11 118717323 118717759 -32065794 + MLT1D LTR MaLR 37 505 0 1724 99 114 0 chr11 118718868 118719131 -32064422 + AluSg SINE Alu 1 293 -17 1142 212 0 5 chr11 118719889 118720111 -32063442 - MER58A DNA MER1_type -1 223 3 502 227 17 8 chr11 118720113 118720232 -32063321 + L2 LINE L2 3189 3308 -5 23 86 0 0 chr11 118721600 118721658 -32061895 + AT_rich Low_complexity Low_complexity 1 58 0 1888 101 8 8 chr11 118721969 118722226 -32061327 + AluSc SINE Alu 1 257 -52 1517 127 0 5 chr11 118722226 118722439 -32061114 - AluSq SINE Alu -63 250 39 404 19 19 0 chr11 118723388 118723441 -32060112 + (TG)n Simple_repeat Simple_repeat 2 55 0 514 309 29 54 chr11 118723463 118723667 -32059886 + MER115 DNA AcHobo 314 512 -181 631 151 0 0 chr11 118723671 118723764 -32059789 + AluS SINE Alu 5 97 -215 425 188 62 0 chr11 118723764 118723876 -32059677 + MER115 DNA AcHobo 506 624 -69 4058 195 27 66 chr11 118723879 118724097 -32059456 - L1MD1 LINE L1 -8 6628 6403 794 173 23 52 chr11 118724097 118724270 -32059283 - FAM SINE Alu -7 168 1 4058 195 27 66 chr11 118724270 118724429 -32059124 - L1MD1 LINE L1 -233 6403 6239 5384 72 7 4 chr11 118724429 118725139 -32058414 - L1PA11 LINE L1 0 6174 5463 4058 195 27 66 chr11 118725139 118725697 -32057856 - L1MD1 LINE L1 -397 6239 5661 1972 149 0 7 chr11 118725697 118725998 -32057555 - AluSx SINE Alu -13 299 1 4058 195 27 66 chr11 118725998 118726947 -32056606 - L1MD1 LINE L1 -975 5661 4810 1538 231 86 8 chr11 118726949 118727321 -32056232 - MER82 DNA MER2_type -2 651 251 3827 224 93 84 chr11 118727338 118728693 -32054860 - L1MD1 LINE L1 -2184 4356 2985 1844 217 86 23 chr11 118728693 118729168 -32054385 + MLT1D LTR MaLR 1 505 0 3827 224 93 84 chr11 118729168 118729598 -32053955 - L1MD1 LINE L1 -3555 2985 2560 2618 176 62 46 chr11 118729602 118729965 -32053588 - L1MD1 LINE L1 -4006 2534 2178 2097 123 7 0 chr11 118729965 118730250 -32053303 + AluSx SINE Alu 3 289 -23 2618 176 62 46 chr11 118730250 118730642 -32052911 - L1MD1 LINE L1 -4362 2178 1767 2173 208 65 4 chr11 118730644 118731105 -32052448 - L1MD1 LINE L1 -5304 1236 748 1467 260 116 39 chr11 118732322 118733011 -32050542 + HAL1 LINE L1 26 767 -1740 198 103 0 0 chr11 118733454 118733483 -32050070 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1562 272 133 32 chr11 118736235 118736337 -32047216 - L2 LINE L2 -16 3297 3207 1774 180 42 14 chr11 118736337 118736692 -32046861 + MLT1A1 LTR MaLR 1 365 0 1562 272 133 32 chr11 118736692 118737561 -32045992 - L2 LINE L2 -106 3207 2230 951 256 100 15 chr11 118737669 118737939 -32045614 + MLT1H LTR MaLR 12 304 -245 235 179 0 54 chr11 118737930 118737986 -32045567 + MLT1G1 LTR MaLR 519 571 -24 * 383 356 65 55 chr11 118738212 118738487 -32045066 + L2 LINE L2 2995 3272 0 23 0 0 0 chr11 118738655 118738678 -32044875 + AT_rich Low_complexity Low_complexity 1 23 0 231 152 22 0 chr11 118738714 118738760 -32044793 + A-rich Low_complexity Low_complexity 2 48 0 484 315 171 10 chr11 118738906 118739316 -32044237 + L2 LINE L2 2838 3313 0 316 265 66 61 chr11 118739314 118739510 -32044043 - L2 LINE L2 -4 3309 3113 * 329 143 0 119 chr11 118740012 118740096 -32043457 - MIR SINE MIR -92 170 97 299 307 67 67 chr11 118740347 118740497 -32043056 + MIR SINE MIR 10 159 -103 1462 142 35 4 chr11 118740497 118740758 -32042795 - Tigger4(Zombi) DNA MER2_type -5 2726 2458 697 159 24 0 chr11 118740762 118740888 -32042665 - Tigger4(Zombi) DNA MER2_type -1601 1130 1002 2169 102 3 7 chr11 118741165 118741494 -32042059 + AluSg SINE Alu 1 310 0 2286 213 39 29 chr11 118741711 118742396 -32041157 + L1M4 LINE L1 2431 3122 -3024 27 29 0 0 chr11 118742584 118742618 -32040935 + AT_rich Low_complexity Low_complexity 1 34 0 2427 93 0 0 chr11 118742783 118743095 -32040458 + AluSp SINE Alu 1 312 -1 315 326 0 0 chr11 118743108 118743206 -32040347 - MIR SINE MIR -133 129 32 1121 166 5 5 chr11 118744050 118744243 -32039310 + L1MB8 LINE L1 5417 5609 -569 1546 111 22 4 chr11 118744277 118744503 -32039050 + MER30 DNA MER1_type 1 230 0 1056 151 29 19 chr11 118744528 118744734 -32038819 + L1MB8 LINE L1 5791 5998 -180 666 212 9 11 chr11 118744746 118744892 -32038661 + MER77 LTR ERV1 479 673 -4 387 198 49 0 chr11 118744925 118745006 -32038547 + ERVL LTR ERVL 3861 3945 -1540 2046 233 80 20 chr11 118745053 118745664 -32037889 + ERVL LTR ERVL 4125 4941 -823 739 145 0 83 chr11 118745664 118745809 -32037744 + FLAM_C SINE Alu 1 133 0 2046 233 80 20 chr11 118745809 118746009 -32037544 + ERVL LTR ERVL 4941 5128 -636 4559 180 28 30 chr11 118746009 118747835 -32035718 - L1MA4 LINE L1 -37 6263 4322 42582 34 21 1 chr11 118747844 118753875 -32029678 + L1PA3 LINE L1 1 6155 0 25 83 0 0 chr11 118753875 118753935 -32029618 + AT_rich Low_complexity Low_complexity 1 60 0 297 222 222 20 chr11 118754157 118754310 -32029243 + MIR SINE MIR 79 262 0 988 191 9 58 chr11 118754338 118754563 -32028990 + MER20 DNA MER1_type 6 219 0 2191 84 47 10 chr11 118754872 118755171 -32028382 + AluY SINE Alu 1 310 -1 3313 148 43 60 chr11 118755613 118756363 -32027190 + L1MB4 LINE L1 5441 6177 -3 441 239 25 122 chr11 118757431 118757628 -32025925 + MIR3 SINE MIR 30 207 -1 1532 137 43 8 chr11 118757760 118758015 -32025538 + MER21A LTR ERV1 1 264 -667 3094 147 44 38 chr11 118758016 118758567 -32024986 + MER21A LTR ERV1 371 924 -7 345 307 45 50 chr11 118759017 118759219 -32024334 + L2 LINE L2 3113 3313 0 1539 173 118 0 chr11 118759322 118759645 -32023908 - MER46B DNA MER2_type 0 236 1 271 186 17 0 chr11 118759602 118759661 -32023892 + MER46A DNA MER2_type 102 161 -75 * 1053 203 82 0 chr11 118759691 118759898 -32023655 + MER58A DNA MER1_type 1 224 0 21 57 0 0 chr11 118760495 118760530 -32023023 + AT_rich Low_complexity Low_complexity 1 35 0 2728 169 24 35 chr11 118760694 118761204 -32022349 + MER44D DNA MER2_type 1 559 -46 1190 193 5 5 chr11 118761204 118761411 -32022142 - AluJo SINE Alu -102 210 4 343 282 10 19 chr11 118761418 118761521 -32022032 + L2 LINE L2 1442 1543 -1771 1238 288 210 35 chr11 118761522 118761874 -32021679 + L2 LINE L2 1818 2107 -1206 2306 96 0 0 chr11 118761874 118762166 -32021387 + AluSc SINE Alu 1 292 -17 1238 288 210 35 chr11 118762166 118762543 -32021010 + L2 LINE L2 2107 2417 -896 237 33 0 0 chr11 118762543 118762573 -32020980 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1238 288 210 35 chr11 118762573 118762638 -32020915 + L2 LINE L2 2417 2469 -844 1922 151 14 57 chr11 118762638 118762990 -32020563 - MER1B DNA MER1_type 0 337 1 1238 288 210 35 chr11 118762990 118763459 -32020094 + L2 LINE L2 2469 3304 -9 2149 107 3 0 chr11 118763478 118763768 -32019785 - AluSg SINE Alu -18 292 2 863 276 0 13 chr11 118764327 118764552 -32019001 - MER58A DNA MER1_type -2 222 1 22 35 0 0 chr11 118764687 118764716 -32018837 + AT_rich Low_complexity Low_complexity 1 29 0 542 273 45 0 chr11 118765709 118765841 -32017712 + MLT1A2 LTR MaLR 1 138 -227 2405 74 44 186 chr11 118765841 118766369 -32017184 + MLT2A2 LTR ERVL 1 453 0 807 163 78 42 chr11 118766404 118766600 -32016953 + MLT1A2 LTR MaLR 173 463 -4 183 333 68 27 chr11 118766866 118767013 -32016540 + L2 LINE L2 1008 1160 -2154 2601 158 28 16 chr11 118768633 118769132 -32014421 + L1PB4 LINE L1 5651 6155 -1 334 389 60 5 chr11 118769453 118769669 -32013884 + L2 LINE L2 1836 2063 -1251 194 0 39 0 chr11 118769670 118769696 -32013857 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 679 199 121 91 chr11 118770010 118770137 -32013416 + MER5C DNA MER1_type 1 123 -201 2343 106 19 27 chr11 118770137 118770504 -32013049 + THE1B LTR MaLR 1 364 0 679 199 121 91 chr11 118770504 118770673 -32012880 + MER5C DNA MER1_type 123 306 -18 217 341 77 11 chr11 118770941 118771032 -32012521 + L2 LINE L2 3169 3265 -7 15280 196 14 14 chr11 118771752 118777971 -32005582 + L1PB1 LINE L1 7 6512 -355 558 0 0 0 chr11 118777971 118778033 -32005520 + (TA)n Simple_repeat Simple_repeat 1 62 0 15280 196 14 14 chr11 118778033 118778389 -32005164 + L1PB1 LINE L1 6512 6867 0 302 236 200 18 chr11 118779793 118779903 -32003650 + L2 LINE L2 3138 3267 -5 1493 238 28 0 chr11 118780145 118780468 -32003085 + MER58B DNA MER1_type 6 337 -4 533 264 46 28 chr11 118780657 118780873 -32002680 + L1MEc LINE L1 36 255 -6141 216 97 0 0 chr11 118780971 118781002 -32002551 + (GAA)n Simple_repeat Simple_repeat 2 32 0 308 230 81 27 chr11 118781672 118781746 -32001807 + MER91A DNA MER1_type 118 195 -1 388 268 68 37 chr11 118781806 118781996 -32001557 - L1M4 LINE L1 -2870 3276 3081 24 0 0 0 chr11 118783320 118783344 -32000209 + AT_rich Low_complexity Low_complexity 1 24 0 262 345 143 25 chr11 118783368 118783487 -32000066 - L2 LINE L2 -261 3052 2920 222 312 168 40 chr11 118783457 118783630 -31999923 - L2 LINE L2 -640 2674 2480 * 225 0 0 0 chr11 118786229 118786254 -31997299 + (CA)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr11 118786664 118786687 -31996866 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr11 118786801 118786835 -31996718 + AT_rich Low_complexity Low_complexity 1 34 0 4543 117 34 18 chr11 118787406 118787473 -31996080 + L1MC1 LINE L1 5586 5650 -683 2209 112 0 10 chr11 118787473 118787778 -31995775 - AluSx SINE Alu -10 302 1 4543 117 34 18 chr11 118787778 118788446 -31995107 + L1MC1 LINE L1 5650 6333 0 185 341 148 15 chr11 118788864 118788999 -31994554 - L3 LINE CR1 -848 729 577 617 225 35 0 chr11 118789144 118789286 -31994267 + MIR SINE MIR 49 195 -67 1112 153 6 0 chr11 118789318 118789494 -31994059 - AluJb SINE Alu -1 311 135 2281 257 61 71 chr11 118789551 118790641 -31992912 + L2 LINE L2 2160 3239 -74 203 244 0 0 chr11 118790880 118790925 -31992628 + (CA)n Simple_repeat Simple_repeat 2 46 0 1972 141 3 0 chr11 118790951 118791282 -31992271 + AluSx SINE Alu 1 332 0 2154 92 0 11 chr11 118792894 118793178 -31990375 - AluSx SINE Alu -14 298 18 2572 266 100 18 chr11 118794001 118794968 -31988585 + L1ME1 LINE L1 206 1252 -5144 1833 213 83 20 chr11 118794982 118795582 -31987971 + L1ME1 LINE L1 1886 2523 -3873 2152 226 107 14 chr11 118795595 118795703 -31987850 + L1ME1 LINE L1 2536 2632 -3583 1755 161 53 6 chr11 118795703 118796026 -31987527 - MER44D DNA MER2_type -1 608 1 2152 226 107 14 chr11 118796026 118796644 -31986909 + L1ME1 LINE L1 2632 3330 -2885 3285 195 49 43 chr11 118796687 118797299 -31986254 + L1ME1 LINE L1 5410 6030 -205 948 204 95 14 chr11 118797299 118797520 -31986033 - MER8 DNA MER2_type 0 239 1 3285 195 49 43 chr11 118797520 118797719 -31985834 + L1ME1 LINE L1 6030 6226 -9 21 0 0 0 chr11 118799582 118799603 -31983950 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr11 118800315 118800352 -31983201 + (CA)n Simple_repeat Simple_repeat 2 38 0 1511 168 94 40 chr11 118800426 118800754 -31982799 + MER7A DNA MER2_type 2 345 -1 896 296 99 18 chr11 118801322 118801865 -31981688 + L1MC4a LINE L1 5317 5903 -1905 36 62 0 0 chr11 118801889 118801953 -31981600 + AT_rich Low_complexity Low_complexity 1 64 0 218 194 0 0 chr11 118802491 118802527 -31981026 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 257 260 48 55 chr11 118805101 118805247 -31978306 + L1MEd LINE L1 1053 1291 -1199 1199 236 48 13 chr11 118805820 118806133 -31977420 + L1MA9 LINE L1 5950 6273 -39 208 135 0 0 chr11 118806136 118806173 -31977380 + (A)n Simple_repeat Simple_repeat 1 37 0 34 24 0 0 chr11 118806471 118806512 -31977041 + AT_rich Low_complexity Low_complexity 1 41 0 325 340 53 7 chr11 118806838 118807120 -31976433 + L1ME LINE L1 4734 5028 -1118 2153 103 0 23 chr11 118807433 118807735 -31975818 + AluSg SINE Alu 1 295 -15 312 272 48 0 chr11 118807863 118807966 -31975587 + L1ME3A LINE L1 5543 5650 -471 23 0 0 0 chr11 118808082 118808105 -31975448 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr11 118808963 118809000 -31974553 + AT_rich Low_complexity Low_complexity 1 37 0 261 0 0 0 chr11 118809015 118809044 -31974509 + (TA)n Simple_repeat Simple_repeat 1 29 0 1295 218 141 43 chr11 118809617 118810085 -31973468 + L1ME3A LINE L1 5637 6150 -20 21 71 0 0 chr11 118810908 118810950 -31972603 + AT_rich Low_complexity Low_complexity 1 42 0 2250 78 0 36 chr11 118810987 118811296 -31972257 + AluSc SINE Alu 1 298 -11 421 329 33 13 chr11 118811592 118811744 -31971809 + MIR3 SINE MIR 40 194 -14 301 265 163 10 chr11 118811888 118811986 -31971567 + MIR SINE MIR 30 142 -66 637 323 61 4 chr11 118812275 118812504 -31971049 - MIR SINE MIR -15 247 6 1804 141 44 10 chr11 118813875 118814172 -31969381 + AluJb SINE Alu 1 307 -5 26 50 0 0 chr11 118814331 118814371 -31969182 + AT_rich Low_complexity Low_complexity 1 40 0 485 344 98 59 chr11 118814465 118815111 -31968442 - L2 LINE L2 -3 3269 2587 309 315 56 25 chr11 118815123 118815285 -31968268 - L2 LINE L2 -27 3286 3120 444 249 67 22 chr11 118815757 118816084 -31967469 + L1ME LINE L1 5209 5557 -613 432 291 16 72 chr11 118816091 118816342 -31967211 - L1MEd LINE L1 -5879 240 4 587 285 93 19 chr11 118816817 118817031 -31966522 + MIR SINE MIR 15 244 -18 1713 181 0 3 chr11 118817515 118817803 -31965750 + AluJo SINE Alu 1 287 -25 233 69 0 0 chr11 118817808 118817837 -31965716 + (GA)n Simple_repeat Simple_repeat 1 29 0 754 107 13 27 chr11 118817837 118817986 -31965567 + (GGAA)n Simple_repeat Simple_repeat 4 150 0 7757 19 0 0 chr11 118818128 118819446 -31964107 + L1PA2 LINE L1 4836 6154 -1 393 83 0 0 chr11 118819446 118819506 -31964047 - L1 LINE L1 -1813 4333 4274 * 1553 213 61 22 chr11 118819496 118819988 -31963565 + L1 LINE L1 2924 3434 -2712 829 133 13 0 chr11 118820506 118820656 -31962897 + L1 LINE L1 3287 3438 -2708 346 127 0 0 chr11 118821524 118821579 -31961974 - Alu SINE Alu -13 288 234 2407 57 34 0 chr11 118822609 118822905 -31960648 - AluY SINE Alu -5 306 1 21 0 0 0 chr11 118823236 118823257 -31960296 + AT_rich Low_complexity Low_complexity 1 21 0 566 350 91 58 chr11 118823698 118824359 -31959194 - L2 LINE L2 -12 3260 2589 40735 34 21 1 chr11 118824364 118830390 -31953163 + L1PA3 LINE L1 5 6155 0 25 83 0 0 chr11 118830390 118830450 -31953103 + AT_rich Low_complexity Low_complexity 1 60 0 913 196 9 58 chr11 118830918 118831143 -31952410 + MER20 DNA MER1_type 6 219 0 2165 72 48 10 chr11 118831452 118831744 -31951809 + AluY SINE Alu 1 303 -8 1713 181 0 3 chr11 118832205 118832493 -31951060 + AluJo SINE Alu 1 287 -25 312 136 0 0 chr11 118832498 118832542 -31951011 + (GA)n Simple_repeat Simple_repeat 1 44 0 875 137 11 22 chr11 118832542 118832724 -31950829 + GA-rich Low_complexity Low_complexity 1 180 0 2180 103 14 7 chr11 118833007 118833299 -31950254 + AluSx SINE Alu 1 294 -18 725 329 164 40 chr11 118833591 118834613 -31948940 + L2 LINE L2 1308 2456 -858 25 0 0 0 chr11 118834648 118834673 -31948880 + AT_rich Low_complexity Low_complexity 1 25 0 2234 98 0 3 chr11 118835132 118835427 -31948126 + AluSg SINE Alu 1 294 -16 553 222 100 33 chr11 118835812 118835992 -31947561 + MLT1J LTR MaLR 320 511 0 267 301 0 27 chr11 118836465 118836538 -31947015 + L2 LINE L2 3242 3312 -1 2909 257 63 77 chr11 118836958 118837870 -31945683 + L1ME LINE L1 202 1125 -5271 2287 96 0 3 chr11 118837870 118838173 -31945380 + AluSc SINE Alu 1 302 -7 2909 257 63 77 chr11 118838173 118838414 -31945139 + L1ME LINE L1 1125 1368 -5028 1476 184 112 9 chr11 118838414 118838745 -31944808 + MLT1A1 LTR MaLR 1 365 0 2909 257 63 77 chr11 118838745 118839708 -31943845 + L1ME LINE L1 1368 2290 -4106 22 56 0 0 chr11 118839754 118839790 -31943763 + AT_rich Low_complexity Low_complexity 1 36 0 536 107 0 0 chr11 118839849 118839924 -31943629 + Alu SINE Alu 222 296 -13 756 202 0 0 chr11 118839930 118840059 -31943494 + AluJ SINE Alu 1 129 -183 417 282 64 6 chr11 118840059 118840215 -31943338 + L1MEc LINE L1 2789 2953 -3262 652 223 101 0 chr11 118840217 118840346 -31943207 + AluJ SINE Alu 138 285 -27 228 35 0 0 chr11 118840346 118840375 -31943178 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 652 223 101 0 chr11 118840375 118840393 -31943160 + AluJ SINE Alu 285 300 -12 2522 245 103 13 chr11 118840404 118841659 -31941894 + L1ME LINE L1 2268 3635 -2580 1312 206 55 93 chr11 118841654 118842349 -31941204 + L1ME LINE L1 3973 4640 -1575 * 435 201 73 12 chr11 118842354 118842518 -31941035 + L1ME LINE L1 4951 5124 -1091 1566 192 51 0 chr11 118842518 118842810 -31940743 + AluJo SINE Alu 1 307 -5 401 212 154 9 chr11 118842908 118843075 -31940478 + L1ME LINE L1 5394 5583 -648 * 3767 166 51 1 chr11 118843063 118844028 -31939525 + L1M1 LINE L1 520 1666 -5899 220 301 32 32 chr11 118844033 118844126 -31939427 + L2 LINE L2 2227 2319 -995 181 99 28 70 chr11 118844294 118844365 -31939188 + T-rich Low_complexity Low_complexity 2 69 0 180 261 0 0 chr11 118844660 118844725 -31938828 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 1374 150 49 39 chr11 118844813 118845119 -31938434 + L1MA7 LINE L1 5981 6289 -2 24 0 0 0 chr11 118845155 118845179 -31938374 + AT_rich Low_complexity Low_complexity 1 24 0 234 62 0 0 chr11 118845734 118845766 -31937787 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 31 26 0 0 chr11 118846378 118846416 -31937137 + AT_rich Low_complexity Low_complexity 1 38 0 236 328 26 17 chr11 118846743 118846859 -31936694 + L2 LINE L2 1640 1756 -1558 1619 200 61 3 chr11 118848824 118849169 -31934384 - MLT1A1 LTR MaLR 0 365 1 228 67 0 0 chr11 118849378 118849408 -31934145 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 1064 243 38 0 chr11 118849811 118850099 -31933454 - L1MC4 LINE L1 -482 7560 7262 684 131 40 74 chr11 118850118 118850294 -31933259 - L1MC4 LINE L1 -959 7083 6914 * 29932 107 20 56 chr11 118850288 118856673 -31926880 - L1PA7 LINE L1 -2 6152 12 528 177 23 15 chr11 118856684 118856814 -31926739 - L1M4 LINE L1 -1399 4747 4617 352 205 26 0 chr11 118857087 118857165 -31926388 - MIR SINE MIR -2 260 181 579 301 24 6 chr11 118857241 118857407 -31926146 - MIR SINE MIR -93 169 1 750 293 63 26 chr11 118858456 118858807 -31924746 - MLT1J LTR MaLR -145 366 3 336 245 139 13 chr11 118858811 118858962 -31924591 + L2 LINE L2 3140 3309 -4 389 174 8 13 chr11 118859077 118859210 -31924343 - MER3 DNA MER1_type -16 193 1 384 270 0 36 chr11 118859368 118859479 -31924074 - MIR3 SINE MIR -16 192 86 237 139 0 0 chr11 118859638 118859674 -31923879 - L2 LINE L2 -91 3222 3187 33 25 0 0 chr11 118860415 118860455 -31923098 + AT_rich Low_complexity Low_complexity 1 40 0 230 123 18 53 chr11 118860496 118860553 -31923000 + T-rich Low_complexity Low_complexity 3 57 0 262 420 51 0 chr11 118860911 118861049 -31922504 - L2 LINE L2 0 3272 3128 1990 125 23 28 chr11 118861067 118861419 -31922134 - THE1B LTR MaLR 0 364 15 335 276 0 0 chr11 118861595 118861671 -31921882 + L2 LINE L2 2897 2972 -342 289 275 11 0 chr11 118862036 118862127 -31921426 - L1MC/D LINE L1 -1937 5871 5780 344 219 267 9 chr11 118862149 118862254 -31921299 + L2 LINE L2 3182 3313 0 305 345 11 58 chr11 118862345 118862519 -31921034 - L2 LINE L2 -208 3064 2899 1972 173 40 27 chr11 118862961 118863504 -31920049 - MLT2A2 LTR ERVL 0 554 1 22 80 0 0 chr11 118864270 118864320 -31919233 + AT_rich Low_complexity Low_complexity 1 50 0 3460 73 8 10 chr11 118864568 118864896 -31918657 - MER41A LTR ERV1 -74 480 152 5783 52 25 7 chr11 118864896 118865648 -31917905 + MER4E LTR ERV1 1 766 0 3460 73 8 10 chr11 118865648 118865800 -31917753 - MER41A LTR ERV1 -402 152 1 535 253 41 14 chr11 118867055 118867201 -31916352 - MIR SINE MIR -11 251 102 1223 158 20 0 chr11 118868443 118868646 -31914907 + MER3 DNA MER1_type 1 207 -2 723 224 40 15 chr11 118868995 118869196 -31914357 - LTR37B LTR ERV1 -59 409 204 2300 58 10 3 chr11 118869982 118870275 -31913278 - AluY SINE Alu -16 295 1 2331 97 0 3 chr11 118870484 118870792 -31912761 - AluSq SINE Alu -6 307 1 443 36 0 0 chr11 118870806 118870861 -31912692 - L1MA6 LINE L1 -14 6286 6232 355 117 17 17 chr11 118870871 118870931 -31912622 - MER5B DNA MER1_type -118 60 1 2987 36 3 0 chr11 118870991 118871348 -31912205 + L1PA3 LINE L1 5795 6152 -3 263 333 27 0 chr11 118871379 118871454 -31912099 + L2 LINE L2 2992 3068 -204 331 290 35 43 chr11 118871551 118871734 -31911819 - MIR SINE MIR -41 221 35 204 355 39 32 chr11 118871794 118871949 -31911604 - MER5B DNA MER1_type -21 157 2 1309 263 59 63 chr11 118873142 118873545 -31910008 + LTR33 LTR ERVL 30 432 -89 3932 116 40 32 chr11 118873545 118874191 -31909362 - L1PB3 LINE L1 -7 6147 5497 1309 263 59 63 chr11 118874191 118874278 -31909275 + LTR33 LTR ERVL 432 518 -3 285 283 86 41 chr11 118874437 118874666 -31908887 + L1MC/D LINE L1 2675 2923 -3223 1742 178 3 3 chr11 118874666 118874953 -31908600 + AluJo SINE Alu 1 287 -25 285 283 86 41 chr11 118874953 118875037 -31908516 + L1MC/D LINE L1 2923 3002 -3144 2290 59 7 13 chr11 118875230 118875535 -31908018 + AluY SINE Alu 1 303 -8 1901 138 24 0 chr11 118875791 118876081 -31907472 - AluSx SINE Alu -12 300 4 593 291 96 32 chr11 118876191 118876793 -31906760 + L1MC/D LINE L1 3612 4252 -1894 945 276 109 40 chr11 118876912 118878054 -31905499 + L1MC/D LINE L1 4511 5731 -747 2346 235 54 23 chr11 118878055 118878612 -31904941 - MLT1E LTR MaLR -1 592 19 32 0 0 0 chr11 118878791 118878823 -31904730 + AT_rich Low_complexity Low_complexity 1 32 0 573 274 25 46 chr11 118878895 118879092 -31904461 + L2 LINE L2 3113 3305 -8 1178 106 12 6 chr11 118880324 118880494 -31903059 - AluSg/x SINE Alu -2 308 138 6139 184 22 31 chr11 118880522 118881716 -31901837 - ERVL LTR ERVL -3199 2565 1383 315 290 68 68 chr11 118882015 118882079 -31901474 + MLT1K LTR MaLR 25 88 -500 2204 100 3 7 chr11 118882079 118882378 -31901175 - AluSp SINE Alu -15 298 1 315 290 68 68 chr11 118882378 118882534 -31901019 + MLT1K LTR MaLR 87 245 -343 222 37 0 0 chr11 118883103 118883130 -31900423 + (CA)n Simple_repeat Simple_repeat 1 27 0 214 210 20 23 chr11 118883142 118883197 -31900356 + MER91 DNA MER1_type 22 69 -71 1275 260 77 55 chr11 118884241 118885090 -31898463 + L2 LINE L2 2453 3309 -4 216 178 0 0 chr11 118885090 118885135 -31898418 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 1096 41 48 0 chr11 118885356 118885501 -31898052 - L1PA10 LINE L1 -1 6167 6016 212 0 0 35 chr11 118886234 118886263 -31897290 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1751 153 0 21 chr11 118886266 118886554 -31896999 - AluJo SINE Alu -30 282 1 793 258 15 4 chr11 118886813 118887073 -31896480 - L1M4 LINE L1 -2904 3242 2980 2566 190 38 31 chr11 118887082 118887179 -31896374 - MER68 LTR ERV1 -10 552 457 5136 67 46 0 chr11 118887179 118887837 -31895716 + LTR12 LTR ERV1 1 688 0 2566 190 38 31 chr11 118887837 118887878 -31895675 - MER68 LTR ERV1 -105 457 418 2378 99 0 0 chr11 118887878 118888191 -31895362 + AluSq SINE Alu 1 313 0 2566 190 38 31 chr11 118888191 118888599 -31894954 - MER68 LTR ERV1 -144 418 1 365 268 41 5 chr11 118888603 118888763 -31894790 - L1M4 LINE L1 -3168 2978 2804 1057 220 18 81 chr11 118888812 118888881 -31894672 - L1M4 LINE L1 -3337 2809 2737 847 209 256 28 chr11 118888881 118889240 -31894313 - LTR47B LTR ERVL 0 443 3 1057 220 18 81 chr11 118889240 118889387 -31894166 - L1M4 LINE L1 -3409 2737 2625 2379 80 0 32 chr11 118889387 118889701 -31893852 - AluY SINE Alu -7 304 1 1057 220 18 81 chr11 118889701 118889865 -31893688 - L1M4 LINE L1 -3521 2625 2452 * 3866 204 43 14 chr11 118889864 118891291 -31892262 + L1ME1 LINE L1 4697 6162 -4 387 271 23 0 chr11 118891370 118891499 -31892054 - L1ME3A LINE L1 -22 6148 6017 2089 209 120 57 chr11 118891602 118892194 -31891359 + MER77 LTR ERV1 53 747 -3 562 261 75 8 chr11 118892194 118892405 -31891148 - L1ME3A LINE L1 -255 5915 5692 704 288 107 4 chr11 118892560 118892793 -31890760 - MIR SINE MIR 0 262 6 247 296 0 0 chr11 118892809 118892897 -31890656 - L1M4 LINE L1 -2694 3452 3365 811 239 15 15 chr11 118893663 118893864 -31889689 + L2 LINE L2 3108 3308 -5 188 296 14 42 chr11 118893892 118893963 -31889590 - L2 LINE L2 -8 3264 3196 478 301 66 60 chr11 118895347 118895785 -31887768 + L1MEc LINE L1 360 914 -5616 339 285 177 25 chr11 118896088 118896246 -31887307 + L1MEc LINE L1 937 1118 -5324 303 241 36 90 chr11 118896256 118896422 -31887131 + L1MEc LINE L1 1324 1480 -5050 242 275 18 9 chr11 118896423 118896532 -31887021 + L1MEc LINE L1 1862 1971 -4569 397 276 59 15 chr11 118896684 118896887 -31886666 + L1MEc LINE L1 2249 2460 -4261 411 272 142 18 chr11 118897273 118897442 -31886111 - MIR SINE MIR 0 262 73 23 0 0 0 chr11 118897797 118897820 -31885733 + AT_rich Low_complexity Low_complexity 1 23 0 270 209 93 70 chr11 118897821 118897907 -31885646 + L2 LINE L2 3138 3225 -47 1686 161 20 13 chr11 118897927 118898225 -31885328 - AluSx SINE Alu -12 300 1 5721 147 22 8 chr11 118898236 118899470 -31884083 - L1MB3 LINE L1 -3 6180 4934 27 29 0 0 chr11 118900063 118900097 -31883456 + AT_rich Low_complexity Low_complexity 1 34 0 229 241 56 0 chr11 118900297 118900351 -31883202 + L3 LINE CR1 1518 1574 -3 2205 104 3 0 chr11 118901337 118901626 -31881927 - AluSp SINE Alu -21 292 3 22 0 0 0 chr11 118901628 118901650 -31881903 + AT_rich Low_complexity Low_complexity 1 22 0 1909 159 7 3 chr11 118902056 118902365 -31881188 - AluJb SINE Alu -2 310 1 5798 106 20 9 chr11 118902584 118903814 -31879739 + L1PA15 LINE L1 4915 6162 -3 1882 158 0 3 chr11 118905118 118905409 -31878144 - AluJo SINE Alu -22 290 1 390 281 120 38 chr11 118905461 118905753 -31877800 + L1ME LINE L1 5363 5678 -443 428 361 75 4 chr11 118905766 118905993 -31877560 - MIR SINE MIR 0 262 20 5225 154 44 24 chr11 118906113 118906489 -31877064 + L1MA8 LINE L1 4897 5264 -1027 1691 170 7 24 chr11 118906489 118906812 -31876741 + AluJb SINE Alu 1 318 0 5225 154 44 24 chr11 118906812 118907793 -31875760 + L1MA8 LINE L1 5264 6277 -14 25 31 0 0 chr11 118907803 118907835 -31875718 + AT_rich Low_complexity Low_complexity 1 32 0 1088 158 190 32 chr11 118908060 118908159 -31875394 - AluJo SINE Alu -26 286 204 3654 65 13 63 chr11 118908159 118908697 -31874856 + MER9 LTR ERVK 1 511 0 1088 158 190 32 chr11 118908697 118908844 -31874709 - AluJo SINE Alu -108 204 1 2222 124 3 0 chr11 118908851 118909157 -31874396 - AluSp SINE Alu -6 307 1 26 74 0 0 chr11 118909157 118909211 -31874342 + AT_rich Low_complexity Low_complexity 1 54 0 1460 161 0 0 chr11 118909301 118909537 -31874016 - MER46A DNA MER2_type 0 236 1 530 330 70 0 chr11 118909543 118909743 -31873810 + MIR SINE MIR 48 261 -1 228 225 56 56 chr11 118909936 118910007 -31873546 - L2 LINE L2 -7 3306 3236 21 0 0 0 chr11 118910452 118910473 -31873080 + AT_rich Low_complexity Low_complexity 1 21 0 1816 182 30 0 chr11 118910578 118910908 -31872645 - MER2 DNA MER2_type 0 345 6 385 293 98 8 chr11 118911431 118911564 -31871989 + MIR SINE MIR 11 155 -107 304 345 42 8 chr11 118911590 118911709 -31871844 + MIR SINE MIR 32 154 -108 573 204 19 0 chr11 118912466 118912574 -31870979 + AluJb SINE Alu 191 300 -12 698 163 0 16 chr11 118912579 118912702 -31870851 + L1MA8 LINE L1 5495 5615 -676 307 153 0 4 chr11 118912745 118912804 -31870749 + MER52A LTR ERV1 382 1142 -197 3593 139 26 37 chr11 118912813 118913352 -31870201 + L1MA8 LINE L1 5593 6125 -166 2409 86 3 0 chr11 118913352 118913653 -31869900 - AluSx SINE Alu -10 302 1 3593 139 26 37 chr11 118913653 118913796 -31869757 + L1MA8 LINE L1 6125 6268 -23 1841 149 0 20 chr11 118913815 118914110 -31869443 - AluJo SINE Alu -18 294 6 25 65 0 0 chr11 118914317 118914363 -31869190 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr11 118915571 118915595 -31867958 + AT_rich Low_complexity Low_complexity 1 24 0 337 245 73 5 chr11 118915605 118915775 -31867778 + L1MEc LINE L1 2329 2472 -3912 2132 239 70 28 chr11 118915779 118916925 -31866628 - L1ME LINE L1 -432 5732 4530 26 0 0 0 chr11 118917092 118917118 -31866435 + AT_rich Low_complexity Low_complexity 1 26 0 2299 241 82 14 chr11 118917351 118918087 -31865466 - L1ME LINE L1 -1737 4409 3624 410 0 0 0 chr11 118918109 118918155 -31865398 - L1PA4 LINE L1 -10 6145 6100 1022 245 25 12 chr11 118918818 118919059 -31864494 + MIR SINE MIR 6 249 -13 881 265 26 77 chr11 118919169 118919261 -31864292 - Charlie8 DNA MER1_type -1945 472 377 2380 75 3 0 chr11 118919261 118919553 -31864000 - AluSg SINE Alu -17 293 1 881 265 26 77 chr11 118919553 118919875 -31863678 - Charlie8 DNA MER1_type -2040 377 79 219 195 0 37 chr11 118920265 118920347 -31863206 + CT-rich Low_complexity Low_complexity 2 80 0 351 0 0 0 chr11 118920352 118920391 -31863162 + (CA)n Simple_repeat Simple_repeat 2 40 0 1430 234 47 41 chr11 118921144 118921441 -31862112 + L1MC4 LINE L1 7505 7808 -234 1010 205 49 0 chr11 118921441 118921646 -31861907 - MER58C DNA MER1_type 0 215 1 1430 234 47 41 chr11 118921646 118921883 -31861670 + L1MC4 LINE L1 7808 8042 0 564 286 63 11 chr11 118922283 118922456 -31861097 - MER5A DNA MER1_type 0 189 8 353 310 71 0 chr11 118922456 118922569 -31860984 + MIR SINE MIR 1 121 -141 21 71 0 0 chr11 118922685 118922727 -31860826 + AT_rich Low_complexity Low_complexity 1 42 0 249 234 0 0 chr11 118923086 118923133 -31860420 + MIR SINE MIR 216 262 0 267 263 81 0 chr11 118923481 118923580 -31859973 + L1MC4 LINE L1 7924 8030 -12 2071 113 0 3 chr11 118923587 118923871 -31859682 + AluSx SINE Alu 1 283 -29 216 0 0 0 chr11 118923876 118923900 -31859653 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 6265 78 6 5 chr11 118924507 118925370 -31858183 - L1PB1 LINE L1 0 6151 5288 1463 170 145 6 chr11 118925370 118925681 -31857872 + MER45B DNA AcHobo 97 450 -590 2307 146 23 10 chr11 118925681 118926066 -31857487 + MER57A LTR ERV1 1 390 -13 622 146 0 36 chr11 118926070 118926180 -31857373 + MER45B DNA AcHobo 447 552 -488 2660 236 37 18 chr11 118926200 118926828 -31856725 - MER76 LTR ERV -46 642 3 1922 192 67 40 chr11 118926831 118927018 -31856535 + MER45B DNA AcHobo 549 729 -852 3296 73 24 4 chr11 118927018 118927472 -31856081 + L1PA11 LINE L1 5712 6174 0 1922 192 67 40 chr11 118927472 118927763 -31855790 + MER45B DNA AcHobo 729 1040 0 31 44 0 0 chr11 118927962 118928007 -31855546 + AT_rich Low_complexity Low_complexity 1 45 0 2123 128 10 0 chr11 118929062 118929367 -31854186 + AluSx SINE Alu 1 308 -4 180 26 26 51 chr11 118929425 118929464 -31854089 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 22 56 0 0 chr11 118930541 118930577 -31852976 + AT_rich Low_complexity Low_complexity 1 36 0 243 306 6 3 chr11 118931379 118931474 -31852079 + MER5A DNA MER1_type 1 106 -82 409 249 151 50 chr11 118931533 118932080 -31851473 + L1MEd LINE L1 780 1390 -4862 367 218 234 0 chr11 118932163 118932287 -31851266 + L1MA10 LINE L1 6175 6327 -7 1823 167 0 3 chr11 118932375 118932662 -31850891 + AluJb SINE Alu 3 288 -24 1864 104 4 0 chr11 118932846 118933097 -31850456 + AluSg1 SINE Alu 44 295 -14 26 0 0 0 chr11 118933399 118933425 -31850128 + AT_rich Low_complexity Low_complexity 1 26 0 414 0 0 0 chr11 118934563 118934609 -31848944 + (CA)n Simple_repeat Simple_repeat 1 46 0 491 208 33 77 chr11 118936284 118936467 -31847086 + MLT1L LTR MaLR 441 615 0 198 196 0 118 chr11 118938542 118938593 -31844960 + L3 LINE CR1 1523 1567 -10 2382 86 0 3 chr11 118938594 118938898 -31844655 - AluY SINE Alu -8 303 1 248 299 35 11 chr11 118939029 118939116 -31844437 + MIR SINE MIR 125 213 -49 252 319 67 17 chr11 118939996 118940115 -31843438 - L2 LINE L2 -10 3262 3138 765 221 6 6 chr11 118940550 118940713 -31842840 + MLT1B LTR MaLR 182 344 -46 2325 85 3 3 chr11 118941159 118941478 -31842075 + AluSq SINE Alu 1 319 0 24 0 0 0 chr11 118941801 118941825 -31841728 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr11 118941901 118941946 -31841607 + AT_rich Low_complexity Low_complexity 1 45 0 37 52 0 0 chr11 118941962 118942020 -31841533 + AT_rich Low_complexity Low_complexity 1 58 0 771 301 62 12 chr11 118942315 118942654 -31840899 + L1MC/D LINE L1 5468 5823 -1985 2312 93 0 3 chr11 118944725 118945025 -31838528 + AluY SINE Alu 1 299 -12 381 208 14 0 chr11 118945652 118945724 -31837829 - MER3 DNA MER1_type -134 75 3 2386 86 6 6 chr11 118945745 118946058 -31837495 + AluSq SINE Alu 1 313 0 356 284 98 0 chr11 118946288 118946390 -31837163 + L2 LINE L2 3152 3263 -9 217 261 168 80 chr11 118947088 118947314 -31836239 - MIR SINE MIR -11 251 6 411 260 215 6 chr11 118947715 118947892 -31835661 - MER58C DNA MER1_type 0 215 2 2163 97 44 39 chr11 118948671 118949032 -31834521 + THE1B LTR MaLR 2 364 0 216 294 0 20 chr11 118949593 118949644 -31833909 + MIR SINE MIR 23 72 -136 213 370 17 34 chr11 118950079 118950198 -31833355 + MIR SINE MIR 20 136 -126 232 290 106 31 chr11 118951340 118951547 -31832006 + L2 LINE L2 3035 3302 -11 2046 118 28 3 chr11 118951770 118952058 -31831495 + AluSq SINE Alu 1 295 -18 22 0 0 0 chr11 118952504 118952526 -31831027 + AT_rich Low_complexity Low_complexity 1 22 0 274 290 93 56 chr11 118952977 118953084 -31830469 + L2 LINE L2 3116 3226 -46 523 269 109 40 chr11 118953092 118953267 -31830286 + MIR SINE MIR 3 189 -73 24 0 0 0 chr11 118953267 118953291 -31830262 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr11 118954379 118954423 -31829130 + AT_rich Low_complexity Low_complexity 1 44 0 492 249 44 54 chr11 118954444 118954649 -31828904 + L2 LINE L2 3106 3308 -5 648 102 10 10 chr11 118955780 118955878 -31827675 + MER4A LTR ERV1 1 98 -566 1904 93 157 88 chr11 118955893 118956269 -31827284 + MER4A LTR ERV1 263 664 0 912 183 20 25 chr11 118957112 118957309 -31826244 + MER3 DNA MER1_type 10 205 -4 2178 140 35 28 chr11 118957624 118958024 -31825529 - MER57A LTR ERV1 0 403 1 372 148 16 0 chr11 118958620 118958681 -31824872 - MER58 DNA MER1_type -2 2418 2357 1289 126 5 0 chr11 118958687 118958878 -31824675 - AluSg/x SINE Alu 0 310 119 2217 100 10 3 chr11 118958887 118959197 -31824356 - AluSq SINE Alu -1 312 1 285 198 91 83 chr11 118959197 118959310 -31824243 - MER58 DNA MER1_type -98 117 1 3951 117 69 49 chr11 118959495 118960265 -31823288 - LTR1 LTR ERV1 0 785 1 493 307 136 29 chr11 118960266 118960575 -31822978 - MLT1L LTR MaLR -2 613 272 225 0 0 0 chr11 118960591 118960616 -31822937 + (T)n Simple_repeat Simple_repeat 1 25 0 2113 225 110 18 chr11 118960638 118961211 -31822342 + MLT1E2 LTR MaLR 1 626 0 466 288 14 68 chr11 118961211 118961431 -31822122 - MLT1L LTR MaLR -407 208 1 885 190 0 0 chr11 118961523 118961660 -31821893 + FRAM SINE Alu 1 132 -44 26 0 0 0 chr11 118962384 118962410 -31821143 + AT_rich Low_complexity Low_complexity 1 26 0 1014 228 184 41 chr11 118962710 118963297 -31820256 - Charlie7 DNA MER1_type -1886 726 56 216 323 86 11 chr11 118963340 118963433 -31820120 + MER5A DNA MER1_type 4 103 -86 227 196 0 22 chr11 118963491 118963537 -31820016 + MER5A DNA MER1_type 102 146 -43 40 73 0 0 chr11 118963732 118963814 -31819739 + AT_rich Low_complexity Low_complexity 1 82 0 22 0 0 30 chr11 118963890 118963902 -31819651 + AT_rich Low_complexity Low_complexity 1 12 -20 1993 113 3 11 chr11 118963902 118964186 -31819367 - AluSc SINE Alu -1 308 27 22 0 0 30 chr11 118964186 118964206 -31819347 + AT_rich Low_complexity Low_complexity 12 32 0 2176 98 0 3 chr11 118964253 118964569 -31818984 - AluSx SINE Alu 0 315 1 529 216 115 7 chr11 118964632 118964780 -31818773 - MIR SINE MIR -50 212 49 1258 221 29 86 chr11 118965287 118965380 -31818173 + MLT1A1 LTR MaLR 1 98 -267 2451 85 0 0 chr11 118965380 118965686 -31817867 + AluSq SINE Alu 1 306 -7 1258 221 29 86 chr11 118965686 118965977 -31817576 + MLT1A1 LTR MaLR 98 363 -2 3469 140 26 76 chr11 118966493 118967220 -31816333 + LTR8 LTR ERV1 1 691 0 216 0 0 0 chr11 118967970 118967994 -31815559 + (T)n Simple_repeat Simple_repeat 1 24 0 3770 105 61 5 chr11 118968931 118969539 -31814014 + L1MA2 LINE L1 5663 6304 0 1801 123 104 11 chr11 118969175 118969540 -31814013 + L1MA3 LINE L1 5907 6305 0 1032 195 15 10 chr11 118969550 118969745 -31813808 - AluJo SINE Alu -116 196 1 2237 111 3 3 chr11 118969810 118970107 -31813446 - AluSg SINE Alu -13 297 1 231 260 104 21 chr11 118970109 118970205 -31813348 + L2 LINE L2 3200 3303 -10 244 283 11 87 chr11 118970266 118970358 -31813195 + MIR3 SINE MIR 98 182 -26 2478 63 7 0 chr11 118970515 118970818 -31812735 - AluY SINE Alu -6 305 1 266 242 0 15 chr11 118971363 118971429 -31812124 + A-rich Low_complexity Low_complexity 5 69 0 676 257 127 21 chr11 118971612 118971849 -31811704 + MIR SINE MIR 1 262 0 428 240 39 65 chr11 118972257 118972411 -31811142 - MER5A DNA MER1_type -2 187 38 372 116 72 0 chr11 118973279 118973348 -31810205 + MIR SINE MIR 189 262 0 334 327 117 19 chr11 118973910 118974072 -31809481 + L2 LINE L2 3090 3267 -5 203 186 0 34 chr11 118974313 118974372 -31809181 + (TCCA)n Simple_repeat Simple_repeat 4 60 0 33 25 0 0 chr11 118974521 118974561 -31808992 + AT_rich Low_complexity Low_complexity 1 40 0 1906 134 0 4 chr11 118974645 118974913 -31808640 + AluSx SINE Alu 1 267 -45 705 189 8 15 chr11 118976711 118976843 -31806710 - FLAM_A SINE Alu -2 131 1 365 301 0 0 chr11 118976979 118977062 -31806491 + L2 LINE L2 3186 3268 -4 186 311 101 42 chr11 118978098 118978217 -31805336 - L2 LINE L2 0 3272 3147 503 252 35 28 chr11 118978861 118979004 -31804549 + L2 LINE L2 3155 3298 -15 313 319 69 0 chr11 118979072 118979188 -31804365 - L2 LINE L2 -189 3083 2960 180 0 0 0 chr11 118979188 118979208 -31804345 + (T)n Simple_repeat Simple_repeat 1 20 0 370 231 22 11 chr11 118979820 118979911 -31803642 - MIR SINE MIR -76 186 95 801 145 43 32 chr11 118981272 118981458 -31802095 + MER53 DNA DNA 1 188 -1 186 351 14 14 chr11 118981615 118981689 -31801864 - L2 LINE L2 -5 3267 3194 214 326 189 13 chr11 118981860 118982093 -31801460 - L2 LINE L2 -1763 1551 1278 23 86 0 0 chr11 118982250 118982308 -31801245 + AT_rich Low_complexity Low_complexity 1 58 0 837 298 163 16 chr11 118984607 118985093 -31798460 + L3 LINE CR1 471 1027 -550 202 380 89 0 chr11 118985139 118985218 -31798335 + L3 LINE CR1 1473 1558 -19 1090 158 58 37 chr11 118985760 118986183 -31797370 - MLT2B1 LTR ERVL 0 520 1 712 221 55 67 chr11 118986304 118986557 -31796996 + LTR67 LTR ERVL 286 535 -22 231 191 15 44 chr11 118986879 118986947 -31796606 + HsTC2 DNA Tc2 1 66 -1832 2260 123 3 0 chr11 118987097 118987407 -31796146 + AluSx SINE Alu 2 312 0 620 187 40 0 chr11 118987743 118987893 -31795660 - L1MC5 LINE L1 -116 7845 7690 25 31 0 0 chr11 118987930 118987962 -31795591 + AT_rich Low_complexity Low_complexity 1 32 0 198 103 0 0 chr11 118988498 118988527 -31795026 + (TTC)n Simple_repeat Simple_repeat 2 30 0 3166 256 140 55 chr11 118988771 118989044 -31794509 - HAL1 LINE L1 -177 2330 2082 2107 135 10 3 chr11 118989044 118989348 -31794205 - AluSx SINE Alu -6 306 1 3166 256 140 55 chr11 118989348 118990891 -31792662 - HAL1 LINE L1 -425 2082 344 1992 152 0 9 chr11 118990891 118991206 -31792347 + AluSx SINE Alu 1 312 0 3166 256 140 55 chr11 118991206 118991282 -31792271 - HAL1 LINE L1 -2163 344 276 1706 109 0 20 chr11 118991299 118991546 -31792007 + AluSg/x SINE Alu 69 310 0 192 319 29 0 chr11 118991575 118991644 -31791909 - L2 LINE L2 -1255 2059 1989 444 161 245 7 chr11 118992152 118992295 -31791258 + MER104 DNA Tc2 1 177 -3 1726 159 10 19 chr11 118992822 118993136 -31790417 - AluJb SINE Alu -1 311 1 181 81 27 27 chr11 118993661 118993698 -31789855 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 2118 90 58 0 chr11 118994188 118994465 -31789088 + AluSx SINE Alu 1 293 -19 451 144 144 27 chr11 118994531 118994677 -31788876 + L1MA7 LINE L1 6125 6287 -4 1974 145 3 7 chr11 118995012 118995322 -31788231 + AluJb SINE Alu 1 309 -3 252 86 0 0 chr11 118995661 118995696 -31787857 + (A)n Simple_repeat Simple_repeat 1 35 0 902 260 24 4 chr11 118996591 118996845 -31786708 + MIR SINE MIR 3 261 -1 1895 153 20 0 chr11 118998029 118998323 -31785230 + AluSx SINE Alu 1 300 -12 768 230 4 52 chr11 118998491 118998739 -31784814 + L1PA16 LINE L1 4889 5124 -1022 4793 105 60 3 chr11 118998936 118999749 -31783804 + L1PA16 LINE L1 5292 6157 -9 349 335 51 17 chr11 119000217 119000393 -31783160 + L2 LINE L2 2465 2646 -668 580 304 82 40 chr11 119000452 119000701 -31782852 - MIR SINE MIR 0 262 2 673 318 116 32 chr11 119001060 119001501 -31782052 + L2 LINE L2 2163 2640 -674 2196 76 14 4 chr11 119001572 119001867 -31781686 - AluSc SINE Alu 0 298 1 36 0 0 0 chr11 119002573 119002609 -31780944 + AT_rich Low_complexity Low_complexity 1 36 0 202 271 21 0 chr11 119002613 119002661 -31780892 + L2 LINE L2 3265 3313 0 437 204 0 27 chr11 119002675 119002822 -31780731 + GA-rich Low_complexity Low_complexity 3 145 0 246 62 0 0 chr11 119003097 119003129 -31780424 + (TC)n Simple_repeat Simple_repeat 2 33 0 317 177 0 0 chr11 119003131 119003189 -31780364 - AluS SINE Alu -28 273 222 325 240 193 52 chr11 119006997 119007189 -31776364 - L1M4 LINE L1 -877 5269 5051 337 241 75 156 chr11 119007508 119007919 -31775634 + L1MC5 LINE L1 6838 7215 -746 333 242 98 82 chr11 119008038 119008455 -31775098 + L1MC5 LINE L1 7311 7734 -227 800 222 13 67 chr11 119009185 119009424 -31774129 + Charlie1 DNA MER1_type 1 226 -2535 514 40 14 14 chr11 119009453 119009527 -31774026 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 226 143 0 0 chr11 119009538 119009580 -31773973 + Charlie1 DNA MER1_type 2687 2728 -33 2115 133 0 0 chr11 119009706 119010008 -31773545 - AluSx SINE Alu -10 302 1 2129 112 3 3 chr11 119010836 119011139 -31772414 + AluSq SINE Alu 1 303 -10 1049 83 0 0 chr11 119011224 119011356 -31772197 + AluY SINE Alu 1 132 -179 2221 108 3 3 chr11 119013320 119013616 -31769937 - AluSq SINE Alu -17 296 1 494 168 112 8 chr11 119013616 119013697 -31769856 - L1MC3 LINE L1 -565 7220 7120 2023 146 3 0 chr11 119013697 119013998 -31769555 - AluSx SINE Alu -10 302 1 494 168 112 8 chr11 119013998 119014041 -31769512 - L1MC3 LINE L1 -665 7120 7083 * 730 237 52 9 chr11 119014037 119014248 -31769305 - L1MD3 LINE L1 -1048 6947 6728 21 0 0 0 chr11 119017190 119017211 -31766342 + AT_rich Low_complexity Low_complexity 1 21 0 2241 117 7 0 chr11 119017907 119018214 -31765339 + AluSc SINE Alu 1 309 0 266 287 46 19 chr11 119018843 119018951 -31764602 - MIR SINE MIR -71 191 81 2215 110 0 0 chr11 119019066 119019358 -31764195 + AluSq SINE Alu 1 292 -21 482 287 37 22 chr11 119019831 119019967 -31763586 - MIR3 SINE MIR -38 170 33 239 244 13 0 chr11 119020227 119020305 -31763248 + (CATATA)n Simple_repeat Simple_repeat 5 83 0 1678 26 0 0 chr11 119020307 119020501 -31763052 - L1PA4 LINE L1 -11 6144 5951 1458 156 0 5 chr11 119021690 119021914 -31761639 + AluJo SINE Alu 1 223 -89 26 0 0 0 chr11 119022076 119022102 -31761451 + AT_rich Low_complexity Low_complexity 1 26 0 195 116 0 70 chr11 119023327 119023370 -31760183 + L3b LINE CR1 1266 1305 -278 547 176 10 23 chr11 119023987 119024178 -31759375 + CT-rich Low_complexity Low_complexity 1 188 0 2307 101 0 3 chr11 119025660 119025967 -31757586 - AluSc SINE Alu -3 306 1 38 51 0 0 chr11 119026247 119026306 -31757247 + AT_rich Low_complexity Low_complexity 1 59 0 240 255 107 29 chr11 119026316 119026559 -31756994 - L1ME4a LINE L1 -69 6052 5791 1634 99 232 0 chr11 119030400 119030693 -31752860 + MER46B DNA MER2_type 1 236 0 2303 100 0 10 chr11 119030924 119031233 -31752320 - AluSg SINE Alu -4 306 1 229 200 0 0 chr11 119031666 119031711 -31751842 + MER116 DNA Mariner 10 54 -26 354 361 138 52 chr11 119031792 119031959 -31751594 + L3 LINE CR1 986 1137 -440 2100 144 0 6 chr11 119031959 119032272 -31751281 + AluSx SINE Alu 1 311 -1 354 361 138 52 chr11 119032272 119032530 -31751023 + L3 LINE CR1 1137 1448 -129 476 174 0 22 chr11 119032783 119032875 -31750678 - FLAM SINE Alu -11 132 43 306 325 0 0 chr11 119033304 119033381 -31750172 - L2 LINE L2 -10 3262 3186 193 208 42 0 chr11 119034555 119034603 -31748950 + L2 LINE L2 3264 3313 0 237 291 110 71 chr11 119034678 119034805 -31748748 - MIR SINE MIR -71 191 60 204 304 0 0 chr11 119034835 119034881 -31748672 - L2 LINE L2 -83 3189 3144 2416 100 0 0 chr11 119034913 119035222 -31748331 + AluSx SINE Alu 1 309 -3 485 226 77 32 chr11 119035796 119035988 -31747565 - MIR SINE MIR 0 262 64 265 195 27 53 chr11 119036074 119036155 -31747398 + MIR SINE MIR 105 181 -81 577 270 57 43 chr11 119036155 119036366 -31747187 + MER58A DNA MER1_type 1 214 -10 1816 158 7 11 chr11 119036369 119036674 -31746879 + AluJo SINE Alu 3 306 0 1079 142 0 0 chr11 119037516 119037671 -31745882 - AluSg/x SINE Alu -22 290 136 1964 122 0 0 chr11 119038546 119038817 -31744736 + AluSx SINE Alu 34 304 -8 207 0 0 0 chr11 119039443 119039466 -31744087 + (T)n Simple_repeat Simple_repeat 1 23 0 575 204 19 0 chr11 119040216 119040324 -31743229 + AluJb SINE Alu 191 300 -12 659 163 0 16 chr11 119040329 119040452 -31743101 + L1MA8 LINE L1 5495 5615 -676 291 153 0 4 chr11 119040495 119040554 -31742999 + MER52A LTR ERV1 382 1142 -197 2682 145 31 24 chr11 119040564 119041103 -31742450 + L1MA8 LINE L1 5593 6135 -156 2383 96 0 0 chr11 119041103 119041404 -31742149 - AluSg1 SINE Alu -8 301 1 2195 80 14 11 chr11 119041540 119041826 -31741727 - AluSg1 SINE Alu -21 288 2 2082 104 0 77 chr11 119042222 119042549 -31741004 + AluSx SINE Alu 1 302 -10 2063 144 0 0 chr11 119043154 119043276 -31740277 + AluSx SINE Alu 1 122 -190 216 0 0 0 chr11 119043276 119043300 -31740253 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2063 144 0 0 chr11 119043300 119043475 -31740078 + AluSx SINE Alu 121 298 -14 2558 43 0 0 chr11 119043636 119043935 -31739618 - AluY SINE Alu -12 299 1 1306 90 16 0 chr11 119044076 119044265 -31739288 - AluY SINE Alu -1 310 119 1306 90 16 0 chr11 119044415 119044604 -31738949 + AluY SINE Alu 119 310 -1 2558 43 0 0 chr11 119044745 119045044 -31738509 + AluY SINE Alu 1 299 -12 2126 120 0 7 chr11 119045205 119045504 -31738049 - AluSg1 SINE Alu -12 297 1 2195 80 14 11 chr11 119045640 119045926 -31737627 - AluSg1 SINE Alu -21 288 2 2053 107 0 77 chr11 119046322 119046648 -31736905 + AluSx SINE Alu 1 301 -11 2006 146 0 0 chr11 119047253 119047375 -31736178 + AluSx SINE Alu 1 122 -190 216 0 0 0 chr11 119047375 119047399 -31736154 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2006 146 0 0 chr11 119047399 119047564 -31735989 + AluSx SINE Alu 121 288 -24 801 145 43 32 chr11 119049717 119049903 -31733650 + MER53 DNA DNA 1 188 -1 186 351 14 14 chr11 119050060 119050134 -31733419 - L2 LINE L2 -5 3267 3194 353 211 31 25 chr11 119052757 119052918 -31730635 + CT-rich Low_complexity Low_complexity 3 164 0 243 244 0 0 chr11 119052918 119052963 -31730590 + polypyrimidine Low_complexity Low_complexity 5 49 0 2236 76 7 0 chr11 119054450 119054750 -31728803 - AluSc SINE Alu 0 302 1 2272 151 42 13 chr11 119054752 119055203 -31728350 - L1MC3 LINE L1 -103 7682 7219 210 37 0 0 chr11 119055203 119055230 -31728323 + (T)n Simple_repeat Simple_repeat 1 27 0 189 289 19 0 chr11 119105258 119105310 -31678243 - MIR SINE MIR -131 131 79 904 124 8 0 chr11 119105311 119105440 -31678113 + FLAM_C SINE Alu 2 131 -12 307 360 77 17 chr11 119105485 119105718 -31677835 - L2 LINE L2 -1311 2003 1757 2033 103 0 50 chr11 119105731 119106033 -31677520 + AluSx SINE Alu 1 287 -25 198 0 0 0 chr11 119106033 119106055 -31677498 + (TA)n Simple_repeat Simple_repeat 2 23 0 216 316 154 8 chr11 119106190 119106307 -31677246 + L2 LINE L2 3175 3308 -5 417 286 9 9 chr11 119106490 119106595 -31676958 + MIR3 SINE MIR 98 202 -6 2225 83 4 0 chr11 119107701 119108028 -31675525 + AluSx SINE Alu 3 330 0 25 0 0 0 chr11 119109444 119109469 -31674084 + AT_rich Low_complexity Low_complexity 1 25 0 201 192 58 0 chr11 119110273 119110325 -31673228 + (AATTG)n Simple_repeat Simple_repeat 4 58 0 1328 37 0 19 chr11 119110793 119110954 -31672599 + L1PA4 LINE L1 5995 6152 -3 28 0 0 0 chr11 119111173 119111201 -31672352 + GC_rich Low_complexity Low_complexity 1 28 0 243 61 0 0 chr11 119111218 119111251 -31672302 + (A)n Simple_repeat Simple_repeat 1 33 0 2356 102 0 0 chr11 119111307 119111612 -31671941 - AluY SINE Alu -6 305 1 1662 128 100 0 chr11 119111795 119112045 -31671508 + AluSx SINE Alu 1 275 -37 225 195 287 46 chr11 119112323 119112410 -31671143 + MER69A DNA AcHobo 29 136 -41 1715 163 12 58 chr11 119112514 119112839 -31670714 - AluJo SINE Alu -2 310 1 1319 146 142 20 chr11 119113376 119113622 -31669931 + AluJb SINE Alu 12 287 -25 858 215 73 6 chr11 119114010 119114187 -31669366 + MER5A DNA MER1_type 1 189 0 1543 191 0 37 chr11 119114327 119114625 -31668928 - AluJo SINE Alu -25 287 1 655 143 143 17 chr11 119114724 119114843 -31668710 + AluJo SINE Alu 2 135 -177 436 274 191 9 chr11 119114844 119115169 -31668384 + L2 LINE L2 1931 2314 -1000 24 0 0 0 chr11 119115386 119115410 -31668143 + AT_rich Low_complexity Low_complexity 1 24 0 1906 128 40 0 chr11 119115883 119116181 -31667372 + AluJb SINE Alu 1 310 -2 185 0 40 0 chr11 119116205 119116230 -31667323 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 2056 125 7 0 chr11 119116270 119116404 -31667149 + AluY SINE Alu 1 133 -178 2539 71 0 3 chr11 119116404 119116715 -31666838 + AluY SINE Alu 1 310 -1 2056 125 7 0 chr11 119116715 119116875 -31666678 + AluY SINE Alu 133 297 -14 1427 224 98 46 chr11 119117529 119117967 -31665586 - MLT1C LTR MaLR -1 466 6 965 159 35 148 chr11 119117972 119118255 -31665298 - MLT1C-int LTR MaLR 0 1371 1121 1129 175 148 66 chr11 119118255 119118587 -31664966 + MLT1A1 LTR MaLR 1 359 -6 2320 226 55 31 chr11 119118589 119119168 -31664385 - MLT1C-int LTR MaLR -245 1126 534 842 188 9 15 chr11 119119455 119119637 -31663916 + MER51A LTR ERV1 453 640 0 249 170 0 0 chr11 119119638 119119685 -31663868 - MLT1C-int LTR MaLR -835 536 490 1210 168 0 40 chr11 119119692 119119918 -31663635 - AluJo SINE Alu -95 217 1 1933 191 68 7 chr11 119119926 119120335 -31663218 + MLT1C LTR MaLR 34 467 0 678 160 39 45 chr11 119120335 119120491 -31663062 + MLT1C-int LTR MaLR 1 155 -1216 1129 127 61 0 chr11 119120495 119120660 -31662893 + AluJo SINE Alu 108 282 -30 2251 110 0 3 chr11 119120664 119120963 -31662590 - AluSx SINE Alu -14 298 1 847 116 25 0 chr11 119121490 119121611 -31661942 + FLAM_C SINE Alu 1 124 -19 24 53 0 0 chr11 119121620 119121658 -31661895 + AT_rich Low_complexity Low_complexity 1 38 0 2300 82 14 0 chr11 119121731 119122024 -31661529 - AluY SINE Alu -14 297 1 441 242 247 16 chr11 119122336 119122530 -31661023 + MIR SINE MIR 3 241 -21 2157 135 3 0 chr11 119122554 119122857 -31660696 - AluSx SINE Alu -8 304 1 198 0 0 0 chr11 119122996 119123018 -31660535 + (TC)n Simple_repeat Simple_repeat 1 22 0 1587 97 112 19 chr11 119123288 119123556 -31659997 + AluSx SINE Alu 1 293 -19 996 188 15 149 chr11 119123579 119123908 -31659645 + AluSp SINE Alu 11 295 -18 750 185 159 5 chr11 119123909 119124098 -31659455 - MLT1G LTR MaLR -32 558 341 579 227 0 8 chr11 119124131 119124263 -31659290 + FLAM_C SINE Alu 2 132 -11 1886 149 7 0 chr11 119124274 119124569 -31658984 + AluJb SINE Alu 2 298 -14 21 0 0 0 chr11 119125117 119125138 -31658415 + GC_rich Low_complexity Low_complexity 1 21 0 2088 95 0 44 chr11 119126303 119126597 -31656956 + AluSx SINE Alu 11 291 -21 185 306 24 12 chr11 119126908 119126993 -31656560 + L2 LINE L2 1780 1865 -1449 22 0 0 0 chr11 119127029 119127051 -31656502 + AT_rich Low_complexity Low_complexity 1 22 0 577 130 250 0 chr11 119127057 119127165 -31656388 - AluJo SINE Alu -176 136 2 193 148 115 33 chr11 119127168 119127229 -31656324 + L2 LINE L2 1937 2002 -1312 532 245 167 14 chr11 119127312 119127606 -31655947 + LTR33A LTR ERVL 2 380 -143 1948 109 19 62 chr11 119127606 119127928 -31655625 - AluSq SINE Alu -5 308 1 392 339 184 14 chr11 119127932 119128303 -31655250 + L2 LINE L2 2638 3072 -241 183 280 280 20 chr11 119128408 119128508 -31655045 - L2 LINE L2 -14 3258 3133 474 315 69 9 chr11 119128740 119128972 -31654581 - L2 LINE L2 -39 3274 3029 961 216 159 0 chr11 119128975 119129202 -31654351 - L1MC4a LINE L1 -395 7413 7151 1025 178 23 0 chr11 119129204 119129378 -31654175 + AluJo SINE Alu 2 179 -133 1378 164 22 116 chr11 119130452 119130600 -31652953 + AluJo SINE Alu 1 105 -207 2108 134 0 0 chr11 119130600 119130898 -31652655 + AluSx SINE Alu 1 298 -14 1378 164 22 116 chr11 119130898 119131067 -31652486 + AluJo SINE Alu 105 288 -24 21 0 0 0 chr11 119131067 119131088 -31652465 + AT_rich Low_complexity Low_complexity 1 21 0 344 298 0 11 chr11 119131134 119131228 -31652325 - MER82 DNA MER2_type -560 93 1 23 0 0 0 chr11 119131320 119131343 -31652210 + AT_rich Low_complexity Low_complexity 1 23 0 1161 161 9 37 chr11 119132343 119132392 -31651161 + AluJb SINE Alu 89 138 -174 1962 147 24 0 chr11 119132392 119132685 -31650868 + AluSx SINE Alu 8 307 -5 1161 161 9 37 chr11 119132685 119132852 -31650701 + AluJb SINE Alu 138 299 -13 210 317 49 12 chr11 119133222 119133304 -31650249 - L2 LINE L2 -158 3114 3030 445 142 0 15 chr11 119133969 119134202 -31649351 + AluJo SINE Alu 1 286 -26 1512 188 3 21 chr11 119134285 119134572 -31648981 + AluJb SINE Alu 26 307 -5 247 289 44 0 chr11 119134622 119134712 -31648841 + MIR SINE MIR 120 213 -49 710 283 49 20 chr11 119134972 119135216 -31648337 - MIR SINE MIR 0 262 12 2062 128 6 10 chr11 119135863 119136175 -31647378 + AluSx SINE Alu 1 311 -1 1933 153 145 55 chr11 119136755 119136889 -31646664 + L1MB7 LINE L1 5645 5766 -418 1955 151 6 6 chr11 119136889 119137201 -31646352 + AluJo SINE Alu 1 312 0 1933 153 145 55 chr11 119137201 119137543 -31646010 + L1MB7 LINE L1 5766 6164 -20 2489 88 0 0 chr11 119137569 119137876 -31645677 + AluSg SINE Alu 4 310 0 538 311 201 12 chr11 119137885 119138219 -31645334 + MLT1H LTR MaLR 95 491 -58 1754 187 7 0 chr11 119139191 119139490 -31644063 - AluJb SINE Alu -7 305 5 1609 163 27 17 chr11 119140649 119140949 -31642604 - AluJo SINE Alu -9 303 1 1408 178 29 0 chr11 119140959 119141200 -31642353 - AluJo SINE Alu -44 268 21 2144 106 0 31 chr11 119141467 119141789 -31641764 + AluSx SINE Alu 1 312 0 1598 182 31 0 chr11 119142009 119142295 -31641258 - AluJo SINE Alu -17 295 1 2036 113 25 0 chr11 119142490 119142772 -31640781 - AluSp SINE Alu -14 299 11 510 236 230 6 chr11 119142773 119142947 -31640606 - MIR SINE MIR -35 227 15 378 298 48 12 chr11 119142949 119143117 -31640436 + L2 LINE L2 2646 2819 -495 1610 201 10 14 chr11 119143156 119143445 -31640108 + AluJo SINE Alu 1 288 -24 2068 149 0 0 chr11 119143467 119143769 -31639784 + AluSx SINE Alu 1 302 -10 236 270 95 0 chr11 119143874 119143948 -31639605 - L2 LINE L2 -214 3058 2978 1938 147 3 10 chr11 119144008 119144314 -31639239 + AluSx SINE Alu 1 304 -8 215 205 0 0 chr11 119144552 119144591 -31638962 - MIR SINE MIR -6 256 218 2384 98 0 3 chr11 119144638 119144945 -31638608 + AluSq SINE Alu 1 306 -7 2188 107 23 0 chr11 119144958 119145257 -31638296 + AluSq SINE Alu 5 310 -3 649 274 173 4 chr11 119145282 119145519 -31638034 - LTR16B LTR ERVL -50 414 138 1724 152 24 3 chr11 119145738 119145894 -31637659 - AluJo SINE Alu -17 295 129 2200 134 0 0 chr11 119145894 119146200 -31637353 - AluSx SINE Alu -6 306 1 1724 152 24 3 chr11 119146200 119146332 -31637221 - AluJo SINE Alu -183 129 1 1207 168 67 0 chr11 119146802 119147040 -31636513 + L1MB4 LINE L1 5894 6147 -33 2266 108 7 13 chr11 119147210 119147515 -31636038 + AluSp SINE Alu 1 303 -10 2076 118 45 0 chr11 119147836 119148124 -31635429 - AluSq SINE Alu -12 301 1 2635 229 21 2 chr11 119148606 119149139 -31634414 + MER68 LTR ERV1 20 562 0 8159 208 62 40 chr11 119149163 119149751 -31633802 + HERVL68 LTR ERVL 31 605 -2432 1951 144 7 3 chr11 119149751 119150050 -31633503 + AluSq SINE Alu 1 300 -13 8159 208 62 40 chr11 119150050 119150762 -31632791 + HERVL68 LTR ERVL 605 1300 -1737 1669 141 10 61 chr11 119150762 119151075 -31632478 - AluJo SINE Alu -15 297 1 8159 208 62 40 chr11 119151075 119151991 -31631562 + HERVL68 LTR ERVL 1300 2375 -662 2665 176 82 10 chr11 119151993 119152494 -31631059 + MER68 LTR ERV1 22 558 -4 1222 255 43 58 chr11 119153226 119153564 -31629989 + MER77 LTR ERV1 277 673 -6 417 269 55 28 chr11 119153665 119153902 -31629651 + L1 LINE L1 3600 3844 -2302 189 0 0 0 chr11 119153927 119153948 -31629605 + (GA)n Simple_repeat Simple_repeat 2 22 0 1818 167 0 3 chr11 119154002 119154296 -31629257 - AluJo SINE Alu -10 302 10 3710 73 35 6 chr11 119154349 119154830 -31628723 - L1PA12 LINE L1 0 6168 5674 1491 170 22 7 chr11 119154832 119155108 -31628445 + L1P LINE L1 4745 5024 -1122 2009 143 10 0 chr11 119155150 119155443 -31628110 - AluSx SINE Alu -14 298 3 318 356 27 14 chr11 119155558 119155704 -31627849 + MER5A DNA MER1_type 1 148 -41 228 331 17 83 chr11 119155585 119155766 -31627787 - MER5A DNA MER1_type -18 171 3 * 2302 102 3 0 chr11 119155872 119156175 -31627378 - AluSp SINE Alu -9 304 1 21 0 0 0 chr11 119156606 119156627 -31626926 + AT_rich Low_complexity Low_complexity 1 21 0 2844 279 101 43 chr11 119157407 119157685 -31625868 - L2 LINE L2 -313 3000 2740 2067 107 45 0 chr11 119157685 119157974 -31625579 - AluSg SINE Alu -8 302 1 2844 279 101 43 chr11 119157974 119158824 -31624729 - L2 LINE L2 -573 2740 1814 1537 129 115 31 chr11 119158824 119158959 -31624594 + AluJb SINE Alu 1 123 -189 2067 131 7 0 chr11 119158959 119159257 -31624296 + AluSx SINE Alu 1 300 -12 1537 129 115 31 chr11 119159257 119159407 -31624146 + AluJb SINE Alu 123 310 -2 585 269 69 82 chr11 119159580 119159826 -31623727 - L2 LINE L2 -1311 2003 1764 2135 78 0 0 chr11 119159826 119160083 -31623470 + AluSx SINE Alu 1 257 -55 585 269 69 82 chr11 119160083 119160301 -31623252 - L2 LINE L2 -1550 1764 1545 4365 70 5 29 chr11 119160408 119160894 -31622659 - L1PB1 LINE L1 -2 6149 5678 2332 93 0 0 chr11 119160894 119161184 -31622369 - AluSg SINE Alu -20 290 1 4365 70 5 29 chr11 119161184 119161280 -31622273 - L1PB1 LINE L1 -473 5678 5581 515 171 0 0 chr11 119161353 119161435 -31622118 + 7SLRNA srpRNA srpRNA 1 82 -238 25 65 0 0 chr11 119161435 119161481 -31622072 + AT_rich Low_complexity Low_complexity 1 46 0 32 43 0 0 chr11 119161881 119161927 -31621626 + AT_rich Low_complexity Low_complexity 1 46 0 2050 104 25 0 chr11 119161929 119162208 -31621345 - AluSg SINE Alu -24 286 1 2023 110 3 11 chr11 119162287 119162569 -31620984 - AluSq SINE Alu -33 280 1 2079 131 7 0 chr11 119162872 119163169 -31620384 - AluSx SINE Alu -13 299 1 32 67 0 0 chr11 119163361 119163421 -31620132 + AT_rich Low_complexity Low_complexity 1 60 0 2555 74 0 0 chr11 119164090 119164399 -31619154 + AluY SINE Alu 1 309 -2 2149 132 0 7 chr11 119164420 119164724 -31618829 + AluSx SINE Alu 1 302 -10 977 199 6 0 chr11 119164851 119165032 -31618521 + FRAM SINE Alu 1 176 0 2414 73 17 3 chr11 119165880 119166181 -31617372 + AluSc SINE Alu 1 305 -4 2506 75 0 0 chr11 119166181 119166486 -31617067 + AluY SINE Alu 1 305 -6 597 113 123 47 chr11 119166954 119167060 -31616493 + FLAM_C SINE Alu 17 130 -13 1647 117 140 12 chr11 119167096 119167353 -31616200 + AluSg SINE Alu 3 292 -18 219 196 235 0 chr11 119167745 119167796 -31615757 - L2 LINE L2 -24 3248 3186 309 291 204 5 chr11 119167806 119168002 -31615551 - L1MC/D LINE L1 -2133 5675 5441 215 324 110 29 chr11 119168532 119168668 -31614885 - L2 LINE L2 -50 3222 3076 203 373 47 7 chr11 119168928 119169078 -31614475 - L2 LINE L2 -585 2729 2574 1875 147 7 17 chr11 119169177 119169470 -31614083 + AluJb SINE Alu 1 290 -22 2174 96 3 7 chr11 119169514 119169807 -31613746 - AluY SINE Alu -19 292 1 584 93 27 0 chr11 119169844 119169919 -31613634 - AluSg/x SINE Alu -26 283 207 2184 118 10 0 chr11 119169922 119170219 -31613334 - AluSx SINE Alu -12 300 1 2174 103 3 7 chr11 119170831 119171122 -31612431 + AluSq SINE Alu 1 290 -23 2011 108 29 4 chr11 119171194 119171473 -31612080 - AluSc SINE Alu -23 286 1 225 396 12 37 chr11 119172237 119172401 -31611152 - MLT1K LTR MaLR -305 283 124 1660 171 17 10 chr11 119172466 119172758 -31610795 + AluJo SINE Alu 1 294 -18 859 188 94 0 chr11 119172758 119172918 -31610635 + AluJb SINE Alu 134 308 -4 302 176 94 35 chr11 119173478 119173563 -31609990 - L1MB7 LINE L1 -2 6182 6093 2036 144 0 0 chr11 119174077 119174368 -31609185 + AluJo SINE Alu 1 291 -21 1177 186 45 0 chr11 119174553 119174773 -31608780 + AluJo SINE Alu 1 230 -82 205 309 18 0 chr11 119174956 119175011 -31608542 + MIR SINE MIR 64 119 -143 684 216 127 0 chr11 119175120 119175301 -31608252 - MER20 DNA MER1_type 0 219 16 900 196 62 0 chr11 119176904 119177083 -31606470 + AluJb SINE Alu 121 310 -2 2176 102 7 7 chr11 119177285 119177579 -31605974 + AluSx SINE Alu 1 294 -18 533 155 217 19 chr11 119178140 119178301 -31605252 - L1PB3 LINE L1 -4 6150 5958 2288 95 0 0 chr11 119178322 119178607 -31604946 + AluSc SINE Alu 1 285 -24 815 219 88 15 chr11 119179950 119180155 -31603398 - MIR SINE MIR -38 224 5 940 167 0 42 chr11 119180390 119180558 -31602995 - FRAM SINE Alu -16 160 1 1896 138 41 3 chr11 119180683 119180973 -31602580 - AluSx SINE Alu -11 301 1 2351 146 84 45 chr11 119181347 119181748 -31601805 + LTR49 LTR ERV1 1 432 -163 2023 139 7 3 chr11 119181748 119182050 -31601503 + AluSx SINE Alu 1 303 -9 2351 146 84 45 chr11 119182050 119182204 -31601349 + LTR49 LTR ERV1 432 578 -17 309 194 97 32 chr11 119182188 119182281 -31601272 + FRAM SINE Alu 66 164 -2 * 620 157 0 0 chr11 119182568 119182670 -31600883 + LTR26E LTR ERV1 1 102 -520 * 751 188 28 0 chr11 119182667 119182811 -31600742 + LTR26B LTR ERV1 384 531 0 2308 105 3 3 chr11 119182872 119183185 -31600368 + AluSp SINE Alu 1 313 0 1911 141 27 14 chr11 119183437 119183734 -31599819 - AluJb SINE Alu -11 301 1 371 230 79 53 chr11 119184326 119184478 -31599075 - MIR SINE MIR -1 261 106 965 192 12 12 chr11 119184542 119184714 -31598839 + FAM SINE Alu 4 175 0 343 247 127 53 chr11 119184861 119185011 -31598542 + L1ME3A LINE L1 4007 4167 -1979 2064 127 7 0 chr11 119185139 119185431 -31598122 + AluSx SINE Alu 6 299 -13 441 239 82 33 chr11 119185439 119185623 -31597930 + L1ME3A LINE L1 4753 4945 -1201 615 249 126 30 chr11 119185712 119186270 -31597283 + L1ME3A LINE L1 5234 5843 -327 22 0 0 0 chr11 119186476 119186498 -31597055 + AT_rich Low_complexity Low_complexity 1 22 0 496 229 64 33 chr11 119186884 119187171 -31596382 - MER46C DNA MER2_type 0 338 8 337 279 66 30 chr11 119187473 119187670 -31595883 + L1ME LINE L1 5533 5736 -385 1431 177 9 105 chr11 119187700 119188044 -31595509 + AluSx SINE Alu 1 311 -1 390 285 126 7 chr11 119190913 119191064 -31592489 - MIR SINE MIR -48 214 46 1781 158 0 42 chr11 119191251 119191393 -31592160 + AluJb SINE Alu 1 147 -165 1611 165 13 32 chr11 119191393 119191702 -31591851 + AluSg SINE Alu 1 303 -7 1781 158 0 42 chr11 119191702 119191869 -31591684 + AluJb SINE Alu 147 297 -15 189 326 0 0 chr11 119192220 119192269 -31591284 + MIR SINE MIR 46 94 -168 180 0 0 0 chr11 119193547 119193567 -31589986 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2089 115 3 3 chr11 119193972 119194259 -31589294 - AluSx SINE Alu -23 289 3 2146 112 0 3 chr11 119194590 119194911 -31588642 - AluSx SINE Alu 0 320 1 237 376 67 7 chr11 119194917 119195066 -31588487 - L2 LINE L2 -571 2743 2586 183 294 21 91 chr11 119195285 119195428 -31588125 - L2 LINE L2 -1362 1952 1820 183 356 123 24 chr11 119195512 119195804 -31587749 - L2 LINE L2 -1739 1575 1255 2163 99 10 7 chr11 119196260 119196563 -31586990 + AluSx SINE Alu 1 304 -8 301 279 29 10 chr11 119196714 119196818 -31586735 - L1M4 LINE L1 -949 5197 5092 657 175 58 0 chr11 119196819 119196939 -31586614 - FLAM_A SINE Alu -5 128 2 249 139 0 0 chr11 119196961 119197004 -31586549 + (TA)n Simple_repeat Simple_repeat 2 44 0 1054 175 0 0 chr11 119197004 119197164 -31586389 - AluJb SINE Alu -20 292 133 2419 74 0 10 chr11 119197165 119197464 -31586089 - AluY SINE Alu -15 296 1 324 274 53 21 chr11 119197561 119197656 -31585897 - L2 LINE L2 -256 3057 2960 976 194 0 0 chr11 119197923 119198093 -31585460 - FAM SINE Alu -5 170 1 327 258 146 0 chr11 119198176 119198265 -31585288 - L2 LINE L2 -8 3305 3204 464 295 62 31 chr11 119198371 119198513 -31585040 + MIR SINE MIR 3 156 -106 2271 83 0 23 chr11 119198513 119198815 -31584738 + AluSg SINE Alu 1 295 -15 464 295 62 31 chr11 119198815 119198896 -31584657 + MIR SINE MIR 156 233 -29 22 0 0 0 chr11 119199102 119199124 -31584429 + AT_rich Low_complexity Low_complexity 1 22 0 2185 92 27 3 chr11 119199470 119199765 -31583788 + AluSx SINE Alu 1 302 -10 241 194 0 97 chr11 119199818 119199880 -31583673 - L2 LINE L2 0 3313 3258 294 149 0 69 chr11 119200397 119200484 -31583069 - L1MC5 LINE L1 -48 7913 7833 227 264 0 42 chr11 119200510 119200582 -31582971 + CT-rich Low_complexity Low_complexity 5 73 0 21 0 0 0 chr11 119200592 119200613 -31582940 + AT_rich Low_complexity Low_complexity 1 21 0 1527 135 98 49 chr11 119200642 119200811 -31582742 - THE1B LTR MaLR 0 364 205 198 0 0 0 chr11 119200811 119200833 -31582720 + (GA)n Simple_repeat Simple_repeat 1 22 0 1527 135 98 49 chr11 119200833 119201010 -31582543 - THE1B LTR MaLR -159 205 1 225 284 153 40 chr11 119201147 119201323 -31582230 - L1ME LINE L1 -422 5699 5504 24 53 0 0 chr11 119201403 119201441 -31582112 + AT_rich Low_complexity Low_complexity 1 38 0 226 135 54 61 chr11 119201441 119201503 -31582050 + (TATAA)n Simple_repeat Simple_repeat 4 65 -85 3450 104 31 36 chr11 119201503 119201748 -31581805 - L1MA3 LINE L1 -8 7716 7471 2333 89 3 13 chr11 119201748 119202061 -31581492 - AluSp SINE Alu -3 310 1 3450 104 31 36 chr11 119202061 119202422 -31581131 - L1MA3 LINE L1 -253 7471 7113 598 14 0 0 chr11 119202422 119202491 -31581062 + L1PA4 LINE L1 6079 6152 -3 226 135 54 61 chr11 119202491 119202575 -31580978 + (TATAA)n Simple_repeat Simple_repeat 63 150 0 1642 121 10 28 chr11 119202585 119202875 -31580678 - L1MA3 LINE L1 -589 7135 6851 * 3736 161 12 20 chr11 119202873 119203344 -31580209 - L1MA3 LINE L1 -1921 5644 5180 2146 116 7 10 chr11 119203344 119203654 -31579899 + AluSq SINE Alu 3 311 -2 3736 161 12 20 chr11 119203654 119203922 -31579631 - L1MA3 LINE L1 -2385 5180 4911 27 0 0 0 chr11 119203924 119203951 -31579602 + AT_rich Low_complexity Low_complexity 1 27 0 2339 74 7 0 chr11 119203951 119204236 -31579317 - AluY SINE Alu -21 290 4 3097 143 19 12 chr11 119204281 119204797 -31578756 - L1MA3 LINE L1 -7022 543 24 311 136 6 3 chr11 119204797 119204862 -31578691 - FLAM_A SINE Alu 0 133 81 2196 88 3 17 chr11 119204975 119205270 -31578283 + AluY SINE Alu 1 291 -20 209 289 167 22 chr11 119205620 119205710 -31577843 - L2 LINE L2 -21 3251 3149 259 346 67 29 chr11 119205813 119205917 -31577636 + L2 LINE L2 3143 3250 -22 543 304 92 18 chr11 119205953 119206170 -31577383 + MIR SINE MIR 29 261 -1 594 233 101 41 chr11 119206314 119206533 -31577020 + MER112 DNA MER1_type 29 260 0 2309 83 36 3 chr11 119206834 119207135 -31576418 - AluSp SINE Alu -2 311 1 213 65 0 0 chr11 119207226 119207257 -31576296 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 606 207 16 0 chr11 119207257 119207378 -31576175 - AluJb SINE Alu -32 280 158 23 0 0 0 chr11 119207495 119207518 -31576035 + AT_rich Low_complexity Low_complexity 1 23 0 1604 164 13 61 chr11 119207892 119208204 -31575349 + AluJo SINE Alu 1 297 -15 194 319 185 0 chr11 119208264 119208383 -31575170 + L2 LINE L2 2807 2947 -366 412 264 58 86 chr11 119208495 119208669 -31574884 + L2 LINE L2 3104 3272 0 1309 169 0 9 chr11 119210186 119210399 -31573154 - AluJb SINE Alu -21 291 81 1671 160 13 26 chr11 119210464 119210770 -31572783 - AluJb SINE Alu -10 302 1 1881 162 3 10 chr11 119210820 119211122 -31572431 + AluJb SINE Alu 10 309 -3 1437 160 78 3 chr11 119211454 119211761 -31571792 + L1MA6 LINE L1 5971 6300 0 2342 81 3 3 chr11 119211837 119212146 -31571407 + AluY SINE Alu 1 309 -2 199 235 44 59 chr11 119212691 119212759 -31570794 + L2 LINE L2 2992 3058 -214 2346 86 0 3 chr11 119213107 119213410 -31570143 - AluSq SINE Alu -9 304 3 2351 103 6 3 chr11 119213442 119213753 -31569800 + AluSp SINE Alu 1 312 -1 962 282 60 0 chr11 119213842 119214108 -31569445 - L2 LINE L2 -489 2825 2544 1375 180 75 12 chr11 119214483 119214738 -31568815 - AluJo SINE Alu -41 271 1 1325 190 158 73 chr11 119214821 119214939 -31568614 - L1MA9 LINE L1 -114 6198 6091 1912 140 10 25 chr11 119214939 119215253 -31568300 - AluJo SINE Alu -3 309 1 1325 190 158 73 chr11 119215253 119215665 -31567888 - L1MA9 LINE L1 -221 6091 5623 1820 262 116 24 chr11 119215665 119216279 -31567274 - L2 LINE L2 -768 2546 1877 1978 118 62 3 chr11 119216284 119216572 -31566981 + AluSx SINE Alu 1 305 -7 2158 117 0 13 chr11 119216582 119216880 -31566673 + AluSx SINE Alu 1 294 -18 24 67 0 0 chr11 119217032 119217077 -31566476 + AT_rich Low_complexity Low_complexity 1 45 0 28 0 0 0 chr11 119217304 119217332 -31566221 + AT_rich Low_complexity Low_complexity 1 28 0 2246 114 0 7 chr11 119218026 119218325 -31565228 - AluSx SINE Alu -15 297 1 1031 232 49 34 chr11 119218521 119218848 -31564705 - L1ME2 LINE L1 -10 6154 5823 716 222 48 43 chr11 119218847 119219077 -31564476 - L1ME2 LINE L1 -588 5576 5346 * 1358 177 35 4 chr11 119219078 119219310 -31564243 - AluJo SINE Alu -73 239 1 2175 122 0 0 chr11 119219319 119219614 -31563939 - AluSc SINE Alu -14 295 1 3029 210 79 80 chr11 119219614 119219874 -31563679 - L1ME2 LINE L1 -814 5332 5073 342 0 0 0 chr11 119219874 119219912 -31563641 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 3029 210 79 80 chr11 119219912 119219925 -31563628 - L1ME2 LINE L1 -1073 5073 5061 2222 113 0 3 chr11 119219925 119220226 -31563327 + AluSx SINE Alu 1 300 -12 3029 210 79 80 chr11 119220226 119220392 -31563161 - L1ME2 LINE L1 -1085 5061 4896 2369 72 0 0 chr11 119220392 119220682 -31562871 + AluY SINE Alu 2 291 -20 3029 210 79 80 chr11 119220682 119221190 -31562363 - L1ME2 LINE L1 -1250 4896 4389 1738 186 19 3 chr11 119221190 119221497 -31562056 - AluJb SINE Alu 0 312 1 3029 210 79 80 chr11 119221497 119221559 -31561994 - L1ME2 LINE L1 -1757 4389 4328 1655 170 62 0 chr11 119221559 119221847 -31561706 - AluJo SINE Alu -6 306 1 3029 210 79 80 chr11 119221847 119222153 -31561400 - L1ME2 LINE L1 -1818 4328 4015 413 256 75 12 chr11 119222198 119222358 -31561195 - L1MC/D LINE L1 -2021 5787 5618 1599 182 50 4 chr11 119222429 119222709 -31560844 + AluJo SINE Alu 1 293 -19 1512 78 59 9 chr11 119222802 119223021 -31560532 - MER30 DNA MER1_type 0 230 1 232 317 48 0 chr11 119223510 119223677 -31559876 + L1MCc LINE L1 1290 1464 -4959 * 2866 187 40 50 chr11 119223675 119223833 -31559720 + L1MB4 LINE L1 5430 5588 -592 794 59 0 0 chr11 119223833 119223934 -31559619 + HY3 scRNA scRNA 1 101 0 2866 187 40 50 chr11 119223934 119224503 -31559050 + L1MB4 LINE L1 5588 6150 -30 1619 163 30 52 chr11 119224531 119224900 -31558653 + L1MB8 LINE L1 5814 6174 -4 415 255 111 37 chr11 119224976 119225247 -31558306 + L1MCc LINE L1 1951 2241 -4881 574 204 0 9 chr11 119225248 119225361 -31558192 + FLAM_A SINE Alu 20 131 -11 918 262 68 17 chr11 119225482 119225776 -31557777 + Charlie2 DNA MER1_type 16 324 -2538 294 169 92 15 chr11 119225794 119225859 -31557694 + Charlie2 DNA MER1_type 1873 1942 -920 1001 178 170 63 chr11 119225942 119226430 -31557123 + Charlie2 DNA MER1_type 1969 2508 -354 371 150 17 0 chr11 119226415 119226475 -31557078 + AluYb8 SINE Alu 120 180 -128 * 22 0 0 0 chr11 119226514 119226536 -31557017 + AT_rich Low_complexity Low_complexity 1 22 0 2155 115 0 10 chr11 119226600 119226904 -31556649 + AluSq SINE Alu 1 301 -12 365 235 0 100 chr11 119226933 119227163 -31556390 + Charlie2 DNA MER1_type 2575 2781 -81 718 249 35 0 chr11 119227167 119227336 -31556217 + MER96 DNA MER1_type 1 175 0 2171 129 0 0 chr11 119228678 119228973 -31554580 + AluSx SINE Alu 1 295 -17 2203 98 0 10 chr11 119229127 119229432 -31554121 + AluY SINE Alu 1 302 -9 666 196 154 38 chr11 119229757 119229961 -31553592 - Tigger6a DNA MER2_type -527 1070 833 2040 155 3 0 chr11 119229961 119230271 -31553282 - AluSx SINE Alu -1 311 1 666 196 154 38 chr11 119230271 119230306 -31553247 - Tigger6a DNA MER2_type -764 833 803 3882 164 50 54 chr11 119230306 119230329 -31553224 + L1MB7 LINE L1 5287 5309 -875 1641 179 7 0 chr11 119230329 119230609 -31552944 + AluJb SINE Alu 1 282 -30 336 24 0 0 chr11 119230612 119230653 -31552900 + (CA)n Simple_repeat Simple_repeat 1 41 0 3882 164 50 54 chr11 119230653 119230789 -31552764 + L1MB7 LINE L1 5311 5446 -738 1560 206 11 3 chr11 119230789 119231071 -31552482 + AluJo SINE Alu 13 296 -16 3882 164 50 54 chr11 119231071 119231727 -31551826 + L1MB7 LINE L1 5446 6106 -78 2325 91 3 0 chr11 119231727 119232023 -31551530 - AluSx SINE Alu -2 310 14 3882 164 50 54 chr11 119232023 119232093 -31551460 + L1MB7 LINE L1 6106 6175 -9 1949 203 107 10 chr11 119232093 119232596 -31550957 - Tigger6a DNA MER2_type -274 809 258 25 0 0 0 chr11 119232615 119232640 -31550913 + AT_rich Low_complexity Low_complexity 1 25 0 1311 165 54 31 chr11 119232640 119232900 -31550653 - AluJo SINE Alu -23 289 24 882 243 95 0 chr11 119232910 119233132 -31550421 - Tigger6a DNA MER2_type -840 243 1 21 57 0 0 chr11 119233436 119233471 -31550082 + AT_rich Low_complexity Low_complexity 1 35 0 597 335 151 12 chr11 119233943 119234361 -31549192 - MLT1J LTR MaLR -18 493 18 2352 84 3 3 chr11 119234734 119235031 -31548522 + AluSq SINE Alu 1 297 -16 1478 132 56 72 chr11 119235129 119235433 -31548120 + AluJo SINE Alu 1 299 -13 2113 122 27 0 chr11 119235485 119235781 -31547772 - AluSx SINE Alu -3 309 6 1919 152 7 0 chr11 119235946 119236236 -31547317 - AluSx SINE Alu -20 292 1 272 27 27 0 chr11 119236969 119237006 -31546547 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 28 79 0 0 chr11 119237478 119237541 -31546012 + AT_rich Low_complexity Low_complexity 1 63 0 330 200 77 0 chr11 119237550 119237615 -31545938 + AluJ/FLAM SINE Alu 1 70 -232 27 0 0 0 chr11 119237640 119237667 -31545886 + AT_rich Low_complexity Low_complexity 1 27 0 2060 127 3 3 chr11 119237926 119238225 -31545328 - AluJo SINE Alu -13 299 1 942 224 76 18 chr11 119238501 119238778 -31544775 - L1ME2 LINE L1 -5 6159 5867 27 0 0 0 chr11 119238817 119238844 -31544709 + AT_rich Low_complexity Low_complexity 1 27 0 442 116 43 0 chr11 119238844 119238913 -31544640 - FLAM_A SINE Alu -60 72 1 2208 122 0 3 chr11 119239181 119239493 -31544060 + AluSx SINE Alu 1 311 -1 2201 84 3 3 chr11 119239669 119239956 -31543597 + AluSc SINE Alu 1 287 -22 1892 128 3 31 chr11 119240927 119241248 -31542305 - AluSg SINE Alu 0 313 1 1878 156 0 13 chr11 119241250 119241551 -31542002 - AluJb SINE Alu -15 297 1 1744 161 43 0 chr11 119241736 119242015 -31541538 - AluJb SINE Alu -20 292 2 625 234 7 41 chr11 119242201 119242346 -31541207 + FLAM_C SINE Alu 3 142 -1 1150 75 6 6 chr11 119242731 119242892 -31540661 - L1PA7 LINE L1 -1 6153 5993 33 25 0 0 chr11 119244443 119244483 -31539070 + AT_rich Low_complexity Low_complexity 1 40 0 30 0 0 0 chr11 119245362 119245392 -31538161 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 119245585 119245613 -31537940 + AT_rich Low_complexity Low_complexity 1 28 0 33 0 0 0 chr11 119245754 119245787 -31537766 + AT_rich Low_complexity Low_complexity 1 33 0 2326 76 7 3 chr11 119247034 119247325 -31536228 + AluSx SINE Alu 1 292 -20 1596 173 39 7 chr11 119247921 119248205 -31535348 - AluJb SINE Alu -5 307 15 204 40 0 0 chr11 119248232 119248257 -31535296 + (TTCTC)n Simple_repeat Simple_repeat 1 25 0 1267 204 66 7 chr11 119248260 119248549 -31535004 - AluJb SINE Alu -1 311 6 687 182 76 0 chr11 119248683 119248815 -31534738 + FLAM_C SINE Alu 1 142 -1 645 172 86 16 chr11 119248855 119248983 -31534570 + AluJo SINE Alu 1 137 -175 324 322 66 62 chr11 119249051 119249111 -31534442 - L2 LINE L2 -1 3312 3254 1856 161 7 10 chr11 119249111 119249415 -31534138 + AluJb SINE Alu 1 303 -9 324 322 66 62 chr11 119249415 119249565 -31533988 - L2 LINE L2 -59 3254 3101 1927 155 10 0 chr11 119249572 119249862 -31533691 + AluJo SINE Alu 1 293 -19 263 244 0 51 chr11 119250200 119250278 -31533275 - L2 LINE L2 -333 2939 2866 400 247 0 0 chr11 119250316 119250389 -31533164 - MER2 DNA MER2_type 0 345 273 1987 138 0 26 chr11 119250389 119250701 -31532852 + AluSx SINE Alu 1 304 -8 727 191 15 0 chr11 119250819 119250955 -31532598 + MIR SINE MIR 2 139 -123 1478 153 57 8 chr11 119250980 119251198 -31532355 - MER2 DNA MER2_type -70 275 40 185 0 40 0 chr11 119251198 119251223 -31532330 + (TGGGGG)n Simple_repeat Simple_repeat 4 29 0 1478 153 57 8 chr11 119251223 119251266 -31532287 - MER2 DNA MER2_type -305 40 1 5168 129 48 148 chr11 119251466 119251774 -31531779 + Tigger3b DNA MER2_type 1 338 -2690 2227 102 118 38 chr11 119251774 119252174 -31531379 - MSTB1 LTR MaLR 0 432 1 5168 129 48 148 chr11 119252174 119252540 -31531013 + Tigger3b DNA MER2_type 338 739 -2289 883 144 0 27 chr11 119252540 119252686 -31530867 - FLAM_C SINE Alu -1 142 1 5168 129 48 148 chr11 119252686 119253233 -31530320 + Tigger3b DNA MER2_type 739 1230 -1 1515 191 43 11 chr11 119253500 119253659 -31529894 - AluJo SINE Alu -23 289 116 282 73 0 0 chr11 119253659 119253700 -31529853 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 1515 191 43 11 chr11 119253700 119253818 -31529735 - AluJo SINE Alu -196 116 3 1008 180 0 0 chr11 119253818 119253985 -31529568 - FRAM SINE Alu -11 165 1 192 125 0 0 chr11 119253993 119254025 -31529528 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 529 156 135 0 chr11 119254027 119254123 -31529430 - FLAM_C SINE Alu -21 122 14 474 171 34 0 chr11 119254775 119254863 -31528690 + FRAM SINE Alu 65 155 -21 444 221 34 94 chr11 119254874 119254971 -31528582 - L1M4 LINE L1 -830 5316 5215 2004 118 23 20 chr11 119254971 119255275 -31528278 + AluSx SINE Alu 1 305 -7 444 221 34 94 chr11 119255275 119255412 -31528141 - L1M4 LINE L1 -931 5215 5096 367 286 57 50 chr11 119256133 119256273 -31527280 + MIR SINE MIR 8 148 -114 782 204 6 51 chr11 119256274 119256451 -31527102 + FRAM SINE Alu 1 170 0 307 218 90 0 chr11 119256454 119256532 -31527021 + MIR SINE MIR 148 232 -30 422 267 60 27 chr11 119256856 119257006 -31526547 + L2 LINE L2 824 978 -2336 298 259 82 7 chr11 119257017 119257152 -31526401 - L1MDa LINE L1 -4915 1300 1156 2392 272 49 17 chr11 119257164 119257985 -31525568 - L1MDa LINE L1 -5400 996 150 343 203 0 0 chr11 119257991 119258060 -31525493 - L1MDa LINE L1 -6293 103 35 2477 325 205 14 chr11 119258060 119258713 -31524840 + L2 LINE L2 975 1502 -1812 2310 97 0 0 chr11 119258713 119259012 -31524541 + AluSg SINE Alu 1 299 -11 2477 325 205 14 chr11 119259012 119259403 -31524150 + L2 LINE L2 1502 1817 -1497 2339 86 0 13 chr11 119259403 119259704 -31523849 + AluY SINE Alu 1 297 -14 2477 325 205 14 chr11 119259704 119259855 -31523698 + L2 LINE L2 1817 1938 -1376 2082 98 34 3 chr11 119259855 119259974 -31523579 + AluSg SINE Alu 1 115 -195 200 57 0 29 chr11 119259974 119260009 -31523544 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2082 98 34 3 chr11 119260009 119260185 -31523368 + AluSg SINE Alu 115 305 -5 2477 325 205 14 chr11 119260185 119260668 -31522885 + L2 LINE L2 1938 2975 -339 2059 147 0 0 chr11 119260669 119260976 -31522577 + AluSx SINE Alu 1 307 -5 2215 82 4 0 chr11 119260976 119261245 -31522308 + AluSx SINE Alu 19 289 -23 2169 121 0 3 chr11 119261794 119262100 -31521453 + AluSg SINE Alu 1 305 -5 461 272 173 29 chr11 119262108 119262906 -31520647 - L1M4 LINE L1 -1070 5076 4155 1630 167 24 24 chr11 119262906 119263199 -31520354 - AluJo SINE Alu -19 293 1 461 272 173 29 chr11 119263199 119263223 -31520330 - L1M4 LINE L1 -1991 4155 4136 229 294 106 35 chr11 119263548 119263803 -31519750 + L1MC/D LINE L1 5283 5555 -615 216 289 0 0 chr11 119264139 119264191 -31519362 + L3 LINE CR1 975 1026 -551 478 327 76 46 chr11 119264361 119264830 -31518723 - L2 LINE L2 -225 3047 2575 387 316 168 0 chr11 119264944 119265099 -31518454 + MER5A DNA MER1_type 9 189 0 374 298 192 10 chr11 119265130 119265328 -31518225 + L3 LINE CR1 1249 1482 -95 245 29 29 0 chr11 119265868 119265902 -31517651 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2214 97 27 0 chr11 119266811 119267109 -31516444 - AluSx SINE Alu -6 306 1 2130 112 0 20 chr11 119267173 119267477 -31516076 - AluSq SINE Alu -15 298 1 407 182 13 26 chr11 119269885 119269962 -31513591 - AluS SINE Alu -242 76 1 21 0 0 0 chr11 119270249 119270270 -31513283 + AT_rich Low_complexity Low_complexity 1 21 0 2069 123 0 16 chr11 119270297 119270605 -31512948 - AluSx SINE Alu -9 303 1 1945 128 43 15 chr11 119270726 119271055 -31512498 + MER44D DNA MER2_type 1 608 -1 571 191 109 48 chr11 119271562 119271709 -31511844 + FRAM SINE Alu 1 156 -20 434 207 0 24 chr11 119272253 119272335 -31511218 - MER5A DNA MER1_type -109 80 1 761 185 5 92 chr11 119272808 119273003 -31510550 - AluJo SINE Alu -15 297 120 266 341 123 15 chr11 119274404 119274606 -31508947 - MIR3 SINE MIR -38 224 3 390 313 70 0 chr11 119276891 119277019 -31506534 + MIR SINE MIR 123 259 -3 235 261 29 14 chr11 119277035 119277104 -31506449 - L2 LINE L2 -23 3249 3180 201 298 99 57 chr11 119278803 119278944 -31504609 + L2 LINE L2 2306 2452 -862 2120 116 0 55 chr11 119279198 119279526 -31504027 - AluSg SINE Alu 0 310 1 23 0 0 0 chr11 119281321 119281344 -31502209 + AT_rich Low_complexity Low_complexity 1 23 0 571 186 26 0 chr11 119281570 119281683 -31501870 - MER20 DNA MER1_type 0 219 104 1908 150 3 7 chr11 119281832 119282132 -31501421 - AluSx SINE Alu -13 299 1 1564 158 49 15 chr11 119283056 119283322 -31500231 - AluSx SINE Alu -37 275 1 2011 157 0 0 chr11 119283324 119283617 -31499936 - AluJb SINE Alu -19 293 1 1107 229 57 9 chr11 119283976 119284203 -31499350 + MER8 DNA MER2_type 1 238 -1 192 270 0 0 chr11 119284273 119284310 -31499243 + MIR SINE MIR 49 85 -177 1744 189 0 3 chr11 119284469 119284766 -31498787 + AluJo SINE Alu 1 296 -16 623 218 17 26 chr11 119285115 119285284 -31498269 - MER104 DNA Tc2 -13 167 1 239 310 0 0 chr11 119285579 119285637 -31497916 - L2 LINE L2 -8 3264 3207 246 296 0 0 chr11 119285847 119285901 -31497652 + MIR SINE MIR 30 83 -125 2827 13 0 0 chr11 119286888 119287197 -31496356 + AluY SINE Alu 1 309 -2 21 57 0 0 chr11 119287264 119287299 -31496254 + AT_rich Low_complexity Low_complexity 1 35 0 2194 106 0 17 chr11 119287328 119287630 -31495923 + AluSc SINE Alu 1 297 -12 1681 177 71 27 chr11 119287645 119288052 -31495501 - L1MB7 LINE L1 -16 6168 5744 1544 181 7 30 chr11 119288067 119288370 -31495183 + AluJo SINE Alu 1 296 -16 2223 220 58 2 chr11 119288426 119288963 -31494590 - L1MB7 LINE L1 -1320 4826 4260 1911 128 0 17 chr11 119288963 119289276 -31494277 - AluSq SINE Alu 0 308 1 2097 131 36 9 chr11 119289397 119289726 -31493827 + MER44D DNA MER2_type 1 608 -1 648 206 97 42 chr11 119290233 119290398 -31493155 + FRAM SINE Alu 1 174 -2 434 207 0 24 chr11 119290924 119291006 -31492547 - MER5A DNA MER1_type -109 80 1 24 32 0 0 chr11 119291487 119291518 -31492035 + AT_rich Low_complexity Low_complexity 1 31 0 1325 182 17 67 chr11 119291518 119291815 -31491738 - AluJo SINE Alu -29 283 2 1948 156 0 17 chr11 119292076 119292377 -31491176 - AluJb SINE Alu -16 296 1 1937 215 19 44 chr11 119292793 119292932 -31490621 + L1MB2 LINE L1 4519 4660 -1486 2087 118 7 23 chr11 119292932 119293237 -31490316 + AluSx SINE Alu 1 300 -12 1937 215 19 44 chr11 119293237 119293576 -31489977 + L1MB2 LINE L1 4660 4985 -1161 1497 144 128 0 chr11 119293637 119293894 -31489659 - AluSp SINE Alu -21 292 3 859 170 0 0 chr11 119294023 119294164 -31489389 + FLAM_C SINE Alu 1 141 -2 4046 165 65 20 chr11 119294173 119294403 -31489150 + L1MB2 LINE L1 5042 5260 -911 1702 182 3 3 chr11 119294403 119294689 -31488864 + AluJb SINE Alu 3 288 -24 4046 165 65 20 chr11 119294689 119295411 -31488142 + L1MB2 LINE L1 5260 6013 -158 497 206 103 0 chr11 119295422 119295529 -31488024 + MLT1B LTR MaLR 3 120 -270 2179 124 0 3 chr11 119295538 119295844 -31487709 + AluSx SINE Alu 1 305 -7 471 150 60 0 chr11 119295853 119295953 -31487600 + L1MB2 LINE L1 6064 6169 -2 298 226 48 12 chr11 119296736 119296820 -31486733 - HAL1 LINE L1 -2169 338 252 1989 124 28 0 chr11 119296856 119297146 -31486407 - AluSx SINE Alu -14 298 1 1656 184 13 33 chr11 119297339 119297643 -31485910 - AluJo SINE Alu -14 298 1 2056 135 23 0 chr11 119297876 119298180 -31485373 + AluSx SINE Alu 1 311 -1 1055 155 0 6 chr11 119298180 119298341 -31485212 + AluJb SINE Alu 134 293 -19 2295 82 3 3 chr11 119298547 119298841 -31484712 + AluY SINE Alu 1 294 -17 1908 150 3 7 chr11 119298888 119299188 -31484365 - AluSx SINE Alu -13 299 1 1564 158 49 15 chr11 119300112 119300378 -31483175 - AluSx SINE Alu -37 275 1 2011 157 0 0 chr11 119300380 119300673 -31482880 - AluJb SINE Alu -19 293 1 1107 229 57 9 chr11 119301032 119301259 -31482294 + MER8 DNA MER2_type 1 238 -1 192 270 0 0 chr11 119301329 119301366 -31482187 + MIR SINE MIR 49 85 -177 1744 189 0 3 chr11 119301525 119301822 -31481731 + AluJo SINE Alu 1 296 -16 623 218 17 26 chr11 119302171 119302340 -31481213 - MER104 DNA Tc2 -13 167 1 239 310 0 0 chr11 119302635 119302693 -31480860 - L2 LINE L2 -8 3264 3207 246 296 0 0 chr11 119302903 119302957 -31480596 + MIR SINE MIR 30 83 -125 2837 13 0 0 chr11 119303945 119304255 -31479298 + AluY SINE Alu 1 310 -1 21 57 0 0 chr11 119304322 119304357 -31479196 + AT_rich Low_complexity Low_complexity 1 35 0 2404 87 0 13 chr11 119304386 119304697 -31478856 + AluSc SINE Alu 1 307 -2 1532 192 25 14 chr11 119305146 119305432 -31478121 + AluJo SINE Alu 1 289 -23 206 380 10 0 chr11 119306180 119306280 -31477273 + MIR SINE MIR 30 130 -78 230 228 41 117 chr11 119306956 119307029 -31476524 + MIR SINE MIR 118 176 -86 2404 89 0 3 chr11 119307029 119307333 -31476220 + AluSg SINE Alu 1 303 -7 230 228 41 117 chr11 119307333 119307404 -31476149 + MIR SINE MIR 176 251 -11 205 123 15 77 chr11 119307785 119307799 -31475754 + A-rich Low_complexity Low_complexity 4 17 -47 2305 101 3 0 chr11 119307799 119308105 -31475448 + AluSp SINE Alu 1 307 -6 205 123 15 77 chr11 119308105 119308155 -31475398 + A-rich Low_complexity Low_complexity 17 64 0 731 189 209 16 chr11 119308587 119308836 -31474717 - L1MC4 LINE L1 -1283 6759 6463 480 219 68 34 chr11 119308857 119309003 -31474550 - L1MD2 LINE L1 -484 5875 5725 910 167 12 6 chr11 119309007 119309169 -31474384 - FRAM SINE Alu -13 163 1 2248 118 0 0 chr11 119309181 119309477 -31474076 - AluSg SINE Alu -14 296 1 2840 235 93 29 chr11 119309477 119309991 -31473562 - L1MD2 LINE L1 -743 5403 4923 1623 189 14 10 chr11 119309991 119310282 -31473271 - AluJo SINE Alu -20 292 1 2840 235 93 29 chr11 119310282 119311106 -31472447 - L1MD2 LINE L1 -1223 4923 4309 576 218 30 8 chr11 119312338 119312471 -31471082 + L1M4 LINE L1 721 856 -5686 1362 199 104 0 chr11 119312485 119312831 -31470722 + L1M4 LINE L1 907 1288 -5254 968 209 113 150 chr11 119312842 119313664 -31469889 + MER52A LTR ERV1 665 1456 -299 255 253 93 60 chr11 119313686 119313836 -31469717 + MER52A LTR ERV1 1601 1755 0 4339 163 63 16 chr11 119313836 119314633 -31468920 + MER52A-int LTR ERV1 1 834 -6257 * 28613 104 17 4 chr11 119314617 119318502 -31465051 + MER52-int LTR ERV1 3156 7091 0 933 248 79 52 chr11 119318503 119319085 -31464468 + MER52A LTR ERV1 282 716 -304 331 211 19 77 chr11 119319060 119319164 -31464389 + MER52A LTR ERV1 1209 1306 -449 * 1691 195 67 94 chr11 119319165 119319619 -31463934 + L1M4 LINE L1 1434 1917 -4727 1509 197 0 26 chr11 119319619 119319924 -31463629 - AluJo SINE Alu -15 297 1 1691 195 67 94 chr11 119319924 119320109 -31463444 + L1M4 LINE L1 1917 2105 -4539 1933 167 0 6 chr11 119320116 119320427 -31463126 + AluSx SINE Alu 1 309 -3 232 0 0 0 chr11 119320543 119320569 -31462984 + L1M4c LINE L1 2440 2465 -3919 6770 155 120 102 chr11 119320569 119322266 -31461287 - MER52A LTR ERV1 0 1755 30 411 214 104 58 chr11 119322281 119322375 -31461178 + L1M4c LINE L1 2490 2578 -3804 1388 112 81 22 chr11 119322375 119322598 -31460955 - MER46A DNA MER2_type 0 236 1 411 214 104 58 chr11 119322598 119322676 -31460877 + L1M4c LINE L1 2578 2670 -3712 1390 197 11 4 chr11 119322697 119322971 -31460582 + AluJo SINE Alu 35 310 -2 1278 217 42 0 chr11 119322971 119323284 -31460269 + L1M4c LINE L1 2671 2996 -3386 337 229 0 0 chr11 119323278 119323348 -31460205 + L1M4c LINE L1 3200 3269 -3113 * 1940 134 3 3 chr11 119323354 119323680 -31459873 + AluSx SINE Alu 2 327 0 466 240 164 14 chr11 119323680 119323826 -31459727 + AluSx SINE Alu 2 169 -133 674 170 0 0 chr11 119323827 119323933 -31459620 + AluJo/FRAM SINE Alu 203 308 -4 2481 85 0 0 chr11 119323963 119324270 -31459283 + AluY SINE Alu 1 307 -4 2108 222 102 53 chr11 119324286 119324602 -31458951 + L1M4c LINE L1 3301 3600 -2782 2216 168 79 8 chr11 119324602 119324996 -31458557 + MSTB LTR MaLR 3 424 -2 2108 222 102 53 chr11 119324996 119325295 -31458258 + L1M4c LINE L1 3600 3883 -2499 2114 124 10 0 chr11 119325295 119325594 -31457959 + AluSc SINE Alu 1 302 -7 2108 222 102 53 chr11 119325594 119325620 -31457933 + L1M4c LINE L1 3883 3906 -2476 2028 144 0 3 chr11 119325620 119325919 -31457634 + AluJb SINE Alu 5 302 -10 2108 222 102 53 chr11 119325919 119326105 -31457448 + L1M4c LINE L1 3906 4171 -2211 1249 209 0 4 chr11 119326105 119326330 -31457223 + AluJb SINE Alu 84 307 -5 2739 208 50 56 chr11 119326353 119326598 -31456955 + L1M4c LINE L1 4162 4407 -1975 2348 97 0 0 chr11 119326598 119326898 -31456655 + AluSx SINE Alu 1 300 -12 2739 208 50 56 chr11 119326898 119326985 -31456568 + L1M4c LINE L1 4407 4493 -1889 180 0 0 0 chr11 119326985 119327005 -31456548 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2739 208 50 56 chr11 119327005 119327018 -31456535 + L1M4c LINE L1 4493 4505 -1877 2225 113 3 7 chr11 119327018 119327327 -31456226 + AluSx SINE Alu 1 308 -4 2739 208 50 56 chr11 119327327 119327347 -31456206 + L1M4c LINE L1 4505 4524 -1858 2074 110 7 0 chr11 119327347 119327653 -31455900 + AluSp SINE Alu 1 308 0 2739 208 50 56 chr11 119327653 119328190 -31455363 + L1M4c LINE L1 4524 5062 -1320 1561 181 7 30 chr11 119328246 119328549 -31455004 - AluJo SINE Alu -16 296 1 1489 175 72 27 chr11 119328566 119328971 -31454582 + L1MB7 LINE L1 5746 6168 -16 2379 96 0 0 chr11 119328986 119329287 -31454266 - AluSq SINE Alu -12 301 1 281 356 123 6 chr11 119329296 119329533 -31454020 + L2 LINE L2 2779 3037 -235 1698 64 30 0 chr11 119329658 119329894 -31453659 + L1PA13 LINE L1 5921 6163 0 463 203 56 116 chr11 119330686 119330937 -31452616 + MER106A DNA MER1_type 1 236 0 3308 163 25 12 chr11 119331315 119331910 -31451643 + MER6A DNA MER2_type 2 604 -1 2166 130 3 0 chr11 119332070 119332378 -31451175 + AluSq SINE Alu 1 309 -4 389 270 107 17 chr11 119333400 119333609 -31449944 + LTR33A LTR ERVL 16 216 -305 416 276 68 5 chr11 119333677 119333869 -31449684 + LTR33A LTR ERVL 320 523 0 508 168 10 0 chr11 119333989 119334090 -31449463 + L1MB3 LINE L1 6030 6131 -52 234 0 0 0 chr11 119334092 119334118 -31449435 + (CAA)n Simple_repeat Simple_repeat 2 27 0 236 292 46 0 chr11 119334837 119334902 -31448651 + L2 LINE L2 3234 3301 -12 1108 140 0 94 chr11 119335464 119335699 -31447854 + MER20 DNA MER1_type 7 219 0 214 304 0 0 chr11 119337890 119337946 -31445607 + MIR SINE MIR 8 63 -199 661 285 86 18 chr11 119338423 119338644 -31444909 - MIR SINE MIR -15 247 12 471 384 42 18 chr11 119338873 119339258 -31444295 + L2 LINE L2 2849 3242 -71 364 272 169 42 chr11 119339738 119339822 -31443731 + L3 LINE CR1 1331 1403 -174 200 35 35 0 chr11 119339822 119339851 -31443702 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1926 123 0 14 chr11 119339855 119340132 -31443421 - AluSg SINE Alu -37 273 1 364 272 169 42 chr11 119340132 119340255 -31443298 + L3 LINE CR1 1405 1570 -7 1109 181 9 0 chr11 119340494 119340710 -31442843 - L1PA16 LINE L1 0 6166 5949 1307 92 0 0 chr11 119341066 119341230 -31442323 - AluSc SINE Alu -14 295 132 196 329 43 0 chr11 119341265 119341335 -31442218 + L2 LINE L2 2957 3029 -243 2131 88 7 0 chr11 119341393 119341665 -31441888 - AluSg SINE Alu -34 276 3 228 163 0 0 chr11 119341897 119341940 -31441613 + (TA)n Simple_repeat Simple_repeat 1 43 0 796 51 0 0 chr11 119343862 119343960 -31439593 - HY3 scRNA scRNA -3 98 1 1336 218 3 21 chr11 119344053 119344338 -31439215 - AluJo SINE Alu -30 282 3 390 275 123 136 chr11 119344437 119344489 -31439064 - L3 LINE CR1 -150 1427 1376 2141 117 14 0 chr11 119344489 119344779 -31438774 + AluSx SINE Alu 1 294 -18 390 275 123 136 chr11 119344779 119345063 -31438490 - L3 LINE CR1 -201 1376 1100 2003 143 0 14 chr11 119345063 119345357 -31438196 - AluSx SINE Alu -22 290 1 390 275 123 136 chr11 119345357 119345629 -31437924 - L3 LINE CR1 -477 1100 826 2464 92 0 0 chr11 119345774 119346079 -31437474 + AluSq SINE Alu 6 310 -3 207 0 0 0 chr11 119346694 119346717 -31436836 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2040 148 0 3 chr11 119346884 119347189 -31436364 - AluSx SINE Alu -4 308 5 2189 117 3 0 chr11 119347210 119347510 -31436043 - AluSq SINE Alu -8 305 5 1893 171 3 7 chr11 119347638 119347943 -31435610 + AluJb SINE Alu 1 304 -8 1391 171 0 29 chr11 119347981 119348227 -31435326 + AluJo SINE Alu 65 303 -9 21 0 0 0 chr11 119348304 119348325 -31435228 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr11 119348764 119348815 -31434738 + AT_rich Low_complexity Low_complexity 1 51 0 1774 185 0 13 chr11 119348906 119349204 -31434349 + AluJb SINE Alu 1 294 -18 1783 138 4 0 chr11 119349414 119349667 -31433886 + AluSx SINE Alu 48 301 -11 687 239 124 20 chr11 119349698 119349899 -31433654 - MER58A DNA MER1_type -1 223 2 186 243 135 14 chr11 119350204 119350278 -31433275 + L2 LINE L2 3168 3250 -63 1811 141 48 10 chr11 119350614 119350904 -31432649 + AluJb SINE Alu 1 301 -11 247 264 141 25 chr11 119351962 119352083 -31431470 - L2 LINE L2 -1047 2267 2133 1277 191 8 147 chr11 119352084 119352254 -31431299 - L1M4 LINE L1 -1484 4662 4470 2388 90 0 28 chr11 119352254 119352575 -31430978 - AluSx SINE Alu 0 312 1 1277 191 8 147 chr11 119352575 119352681 -31430872 - L1M4 LINE L1 -1676 4470 4351 766 179 0 0 chr11 119352681 119352798 -31430755 - FLAM_C SINE Alu -15 118 2 1277 191 8 147 chr11 119352798 119353148 -31430405 - L1M4 LINE L1 -1795 4351 4122 1112 159 106 0 chr11 119353155 119353382 -31430171 - L1MB3 LINE L1 -8 6175 5925 1361 203 41 12 chr11 119353385 119353725 -31429828 + MLT1A1 LTR MaLR 4 353 -12 1969 195 20 2 chr11 119353741 119354147 -31429406 - L1MB3 LINE L1 -275 5908 5496 1379 159 84 145 chr11 119354307 119354745 -31428808 - L1MC2 LINE L1 -13 6331 5929 5945 142 58 40 chr11 119354745 119355614 -31427939 - Tigger3b DNA MER2_type -1797 1231 332 189 0 0 0 chr11 119355614 119355635 -31427918 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5945 142 58 40 chr11 119355635 119355974 -31427579 - Tigger3b DNA MER2_type -2696 332 1 1379 159 84 145 chr11 119355974 119356058 -31427495 - L1MC2 LINE L1 -415 5929 5841 1427 186 114 7 chr11 119356081 119356361 -31427192 - AluJo SINE Alu -2 310 1 576 181 0 9 chr11 119356380 119356485 -31427068 + FLAM_A SINE Alu 37 140 -2 275 290 121 24 chr11 119356498 119356705 -31426848 + L1M4 LINE L1 3280 3506 -2640 * 849 178 47 21 chr11 119356690 119356881 -31426672 + L1M4 LINE L1 4049 4244 -1902 472 181 0 0 chr11 119356921 119356993 -31426560 + AluS SINE Alu 3 74 -238 689 252 119 28 chr11 119356993 119357279 -31426274 + LTR40b LTR ERVL 129 440 -22 1726 194 7 3 chr11 119357279 119357578 -31425975 + AluJb SINE Alu 1 300 -12 2112 152 0 0 chr11 119357672 119357975 -31425578 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr11 119358270 119358293 -31425260 + AT_rich Low_complexity Low_complexity 1 23 0 2206 126 3 0 chr11 119360162 119360464 -31423089 - AluSx SINE Alu -9 303 1 868 312 180 34 chr11 119360615 119361208 -31422345 + L3 LINE CR1 863 1542 -35 301 175 0 88 chr11 119361724 119361804 -31421749 - AluS SINE Alu -235 73 1 1813 181 14 24 chr11 119361819 119361928 -31421625 - L1MB7 LINE L1 -19 6165 6056 2231 111 0 0 chr11 119361928 119362234 -31421319 - AluSg SINE Alu -4 306 1 1813 181 14 24 chr11 119362234 119362545 -31421008 - L1MB7 LINE L1 -128 6056 5749 25 65 0 0 chr11 119362618 119362664 -31420889 + AT_rich Low_complexity Low_complexity 1 46 0 2270 112 3 0 chr11 119362947 119363250 -31420303 + AluSp SINE Alu 1 304 -9 435 302 9 9 chr11 119363942 119364058 -31419495 - MIR3 SINE MIR -6 202 87 228 316 154 8 chr11 119364230 119364347 -31419206 - L2 LINE L2 -5 3308 3175 180 0 0 0 chr11 119364482 119364502 -31419051 + (TA)n Simple_repeat Simple_repeat 2 21 0 2011 101 0 0 chr11 119364502 119364759 -31418794 - AluSg SINE Alu -25 285 29 205 162 0 0 chr11 119365439 119365476 -31418077 + (CA)n Simple_repeat Simple_repeat 2 38 0 776 221 68 4 chr11 119365646 119365895 -31417658 - L1MA4 LINE L1 -5 6295 6031 2061 121 14 0 chr11 119368997 119369286 -31414267 - AluSx SINE Alu -19 293 1 2349 103 0 0 chr11 119369760 119370062 -31413491 - AluSx SINE Alu -10 302 1 26 30 0 0 chr11 119370503 119370536 -31413017 + AT_rich Low_complexity Low_complexity 1 33 0 5456 51 1 4 chr11 119370855 119371539 -31412014 - L1PA7 LINE L1 -3 6151 5470 943 204 0 0 chr11 119371949 119372111 -31411442 - AluJb SINE Alu -5 307 146 1338 154 35 94 chr11 119372204 119372522 -31411031 - AluJb SINE Alu -3 309 11 186 210 210 10 chr11 119372721 119372821 -31410732 - L2 LINE L2 -1 3312 3193 2304 84 10 16 chr11 119373544 119373854 -31409699 + AluY SINE Alu 1 308 -3 2243 129 0 0 chr11 119374367 119374670 -31408883 - AluSx SINE Alu -9 303 1 336 264 67 36 chr11 119374698 119374891 -31408662 - L1MB7 LINE L1 -376 5745 5547 27031 31 15 1 chr11 119374962 119380979 -31402574 + L1PA2 LINE L1 1 6150 -5 247 301 0 0 chr11 119380981 119381064 -31402489 - L1ME LINE L1 -298 5823 5741 2267 118 0 7 chr11 119381125 119381431 -31402122 - AluSx SINE Alu -8 304 1 222 115 19 39 chr11 119381819 119381871 -31401682 + T-rich Low_complexity Low_complexity 2 52 0 2285 88 3 3 chr11 119381912 119382209 -31401344 + AluY SINE Alu 1 297 -14 290 320 40 9 chr11 119382358 119382580 -31400973 - L1ME LINE L1 -256 5865 5637 761 163 44 103 chr11 119383348 119383551 -31400002 - L1MC4 LINE L1 -90 7952 7762 640 200 194 0 chr11 119383555 119383725 -31399828 - L1MC4 LINE L1 -393 7649 7447 295 234 35 106 chr11 119383768 119383909 -31399644 - L1MC4 LINE L1 -1450 6592 6462 253 345 142 26 chr11 119384736 119384962 -31398591 - MIR SINE MIR -2 260 9 204 125 0 0 chr11 119384982 119385014 -31398539 + (TG)n Simple_repeat Simple_repeat 1 32 0 2299 90 0 0 chr11 119385041 119385330 -31398223 - AluSg SINE Alu -21 289 1 1945 141 0 29 chr11 119386198 119386511 -31397042 - AluSx SINE Alu -8 304 1 460 292 140 0 chr11 119387277 119387455 -31396098 - MIR SINE MIR 0 262 60 2251 103 0 0 chr11 119387664 119387964 -31395589 - AluSq SINE Alu 0 313 14 20888 121 17 92 chr11 119387966 119392178 -31391375 - L1P LINE L1 -2248 3898 3 562 272 78 16 chr11 119392180 119392371 -31391182 + L2 LINE L2 3111 3313 0 1982 132 140 21 chr11 119392834 119393220 -31390333 - MSTB1 LTR MaLR 0 432 1 201 74 0 0 chr11 119393795 119393822 -31389731 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 657 319 148 44 chr11 119394467 119394828 -31388725 + L3 LINE CR1 686 1008 -569 848 126 119 0 chr11 119394828 119394987 -31388566 - L1MA2 LINE L1 0 6304 6127 657 319 148 44 chr11 119394987 119395220 -31388333 + L3 LINE CR1 1008 1342 -235 1080 135 25 12 chr11 119396301 119396464 -31387089 - AluJb SINE Alu -14 298 134 1726 138 28 28 chr11 119396464 119396754 -31386799 - AluJo SINE Alu -14 298 9 258 264 0 0 chr11 119396828 119396881 -31386672 - L2 LINE L2 -5 3267 3215 211 200 0 0 chr11 119396898 119396933 -31386620 - MIR SINE MIR -109 153 119 588 313 0 12 chr11 119397382 119397548 -31386005 + MIR3 SINE MIR 35 198 -10 1195 179 64 9 chr11 119397994 119398212 -31385341 + MER8 DNA MER2_type 10 239 0 218 291 0 25 chr11 119399203 119399282 -31384271 + L2 LINE L2 3086 3162 -151 2079 152 0 0 chr11 119399284 119399594 -31383959 - AluSx SINE Alu -2 310 1 2160 103 65 0 chr11 119400383 119400673 -31382880 + AluSx SINE Alu 1 309 -3 1844 110 5 4 chr11 119400673 119401098 -31382455 - MER51A LTR ERV1 -47 587 1 29 0 0 0 chr11 119401890 119401919 -31381634 + AT_rich Low_complexity Low_complexity 1 29 0 1754 172 0 16 chr11 119402403 119402706 -31380847 - AluSx SINE Alu -14 298 1 22 0 0 0 chr11 119402833 119402855 -31380698 + AT_rich Low_complexity Low_complexity 1 22 0 1516 175 33 7 chr11 119404192 119404491 -31379062 - AluJb SINE Alu 0 306 1 1078 160 4 82 chr11 119404618 119404676 -31378877 + AluJo SINE Alu 88 149 -163 1761 157 0 40 chr11 119404676 119405001 -31378552 + AluJb SINE Alu 1 312 0 1078 160 4 82 chr11 119405001 119405173 -31378380 + AluJo SINE Alu 149 300 -12 2301 100 0 3 chr11 119405284 119405595 -31377958 + AluY SINE Alu 1 310 -1 996 288 124 60 chr11 119405630 119405671 -31377882 - L1M4 LINE L1 -5599 943 906 1135 194 49 3 chr11 119405671 119405955 -31377598 - L1MB4 LINE L1 0 6180 5884 996 288 124 60 chr11 119405955 119406798 -31376755 - L1M4 LINE L1 -5636 906 2 23 33 0 0 chr11 119407612 119407642 -31375911 + AT_rich Low_complexity Low_complexity 1 30 0 1891 160 28 0 chr11 119407934 119408222 -31375331 + AluJb SINE Alu 1 296 -16 282 116 0 0 chr11 119408222 119408265 -31375288 + (TA)n Simple_repeat Simple_repeat 2 44 0 1938 132 3 3 chr11 119408789 119409076 -31374477 + AluSx SINE Alu 1 287 -25 194 309 138 13 chr11 119409492 119409644 -31373909 + L2 LINE L2 2568 2738 -576 1615 191 13 33 chr11 119409665 119409968 -31373585 - AluJo SINE Alu -15 297 1 2199 103 10 13 chr11 119409979 119410289 -31373264 - AluSq SINE Alu -4 309 1 2304 100 0 3 chr11 119410583 119410882 -31372671 - AluSx SINE Alu -14 298 1 796 184 77 10 chr11 119411056 119411252 -31372301 - MER3 DNA MER1_type 0 209 1 1065 143 167 2 chr11 119411721 119411980 -31371573 + MER7A DNA MER2_type 1 346 0 395 294 40 0 chr11 119412684 119412810 -31370743 - L1ME3A LINE L1 -13 6157 6027 1753 204 21 8 chr11 119412938 119413311 -31370242 + L1M4 LINE L1 4056 4433 -1713 675 181 2 3 chr11 119413321 119413441 -31370112 - MLT1F1 LTR MaLR -434 121 6 293 237 83 90 chr11 119413458 119413614 -31369939 + L1ME3 LINE L1 6006 6160 -2 2065 90 4 0 chr11 119413660 119413926 -31369627 - AluSx SINE Alu -45 267 1 371 236 258 6 chr11 119414353 119414531 -31369022 - L2 LINE L2 -1 3312 3090 844 99 0 99 chr11 119415208 119415349 -31368204 - FRAM SINE Alu -9 167 41 266 341 123 15 chr11 119416810 119417012 -31366541 - MIR3 SINE MIR -38 224 3 390 313 70 0 chr11 119419297 119419425 -31364128 + MIR SINE MIR 123 259 -3 242 257 238 0 chr11 119419441 119419546 -31364007 - L2 LINE L2 -23 3290 3161 1934 133 7 23 chr11 119419626 119419928 -31363625 + AluSx SINE Alu 1 297 -15 196 298 106 64 chr11 119421071 119421212 -31362341 + L2 LINE L2 2306 2452 -862 366 368 89 35 chr11 119421262 119421466 -31362087 + L2 LINE L2 2808 3000 -272 2165 136 7 0 chr11 119421466 119421776 -31361777 - AluSx SINE Alu 0 312 1 366 368 89 35 chr11 119421776 119421965 -31361588 + L2 LINE L2 3000 3222 -50 277 358 66 7 chr11 119422493 119422630 -31360923 + MIR3 SINE MIR 39 183 -25 199 268 0 85 chr11 119423543 119423625 -31359928 + MIR SINE MIR 97 171 -91 449 278 69 69 chr11 119423663 119423908 -31359645 - MIR SINE MIR -6 256 12 23 0 0 0 chr11 119424778 119424801 -31358752 + AT_rich Low_complexity Low_complexity 1 23 0 1613 181 4 29 chr11 119425320 119425601 -31357952 - AluJo SINE Alu -36 276 3 1950 145 0 7 chr11 119425742 119426045 -31357508 + AluJb SINE Alu 1 301 -11 220 217 96 0 chr11 119427099 119427182 -31356371 + L2 LINE L2 3106 3196 -117 722 331 158 21 chr11 119427196 119427960 -31355593 + L2 LINE L2 1214 2082 -1232 24 67 0 0 chr11 119428191 119428236 -31355317 + AT_rich Low_complexity Low_complexity 1 45 0 1620 190 35 0 chr11 119428442 119428732 -31354821 - AluJb SINE Alu -12 300 1 1261 128 83 16 chr11 119428933 119429175 -31354378 - Tigger2 DNA MER2_type 0 2718 2461 3507 139 60 75 chr11 119429227 119429983 -31353570 - Tigger2 DNA MER2_type -1961 757 14 217 294 0 0 chr11 119430719 119430787 -31352766 - MIR SINE MIR -11 251 184 2191 63 0 60 chr11 119430953 119431274 -31352279 + AluY SINE Alu 1 303 0 1463 171 38 58 chr11 119431274 119431566 -31351987 - AluJo SINE Alu -26 286 1 256 218 0 50 chr11 119431956 119432057 -31351496 - L1MC4 LINE L1 -1339 6703 6608 24 53 0 0 chr11 119432366 119432404 -31351149 + AT_rich Low_complexity Low_complexity 1 38 0 2133 120 3 3 chr11 119432405 119432713 -31350840 + AluSx SINE Alu 1 308 -4 2100 113 7 17 chr11 119432729 119433030 -31350523 + AluSx SINE Alu 1 298 -14 1929 149 0 3 chr11 119433219 119433508 -31350045 + AluJb SINE Alu 1 288 -24 883 305 154 14 chr11 119433603 119434045 -31349508 + L2 LINE L2 2810 3313 0 487 250 226 24 chr11 119434854 119435040 -31348513 - MIR SINE MIR -7 255 20 2369 137 42 21 chr11 119435040 119435465 -31348088 - Tigger2a DNA MER2_type 0 434 1 487 250 226 24 chr11 119435465 119435490 -31348063 - MIR SINE MIR -242 20 1 2196 110 3 17 chr11 119435826 119436126 -31347427 + AluSx SINE Alu 1 296 -16 183 329 38 38 chr11 119436382 119436461 -31347092 + L2 LINE L2 3179 3257 -56 2098 132 3 0 chr11 119436469 119436779 -31346774 - AluSx SINE Alu -1 311 1 376 229 10 21 chr11 119437277 119437373 -31346180 + MIR3 SINE MIR 113 207 -1 1989 139 12 9 chr11 119437684 119438029 -31345524 + L1MA4 LINE L1 5954 6299 -1 809 159 25 12 chr11 119438152 119438315 -31345238 + Charlie1 DNA MER1_type 2380 2544 -217 348 240 109 123 chr11 119438315 119438665 -31344888 - MER2 DNA MER2_type 0 345 1 750 168 86 38 chr11 119438665 119438874 -31344679 + Charlie1 DNA MER1_type 2543 2761 0 245 279 96 19 chr11 119440041 119440145 -31343408 + MIR SINE MIR 89 200 -62 213 94 0 0 chr11 119440185 119440217 -31343336 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 199 250 0 21 chr11 119440252 119440300 -31343253 + MIR SINE MIR 210 256 -6 23 33 0 0 chr11 119440607 119440637 -31342916 + AT_rich Low_complexity Low_complexity 1 30 0 2109 108 0 7 chr11 119441139 119441448 -31342105 - AluSx SINE Alu 0 307 1 830 179 20 0 chr11 119441590 119441741 -31341812 + MIR SINE MIR 98 251 -11 2111 96 7 4 chr11 119442563 119442866 -31340687 - AluSx SINE Alu 0 304 1 1631 77 45 5 chr11 119442986 119443207 -31340346 + MER30 DNA MER1_type 1 230 0 1881 144 13 26 chr11 119443721 119444027 -31339526 - AluJb SINE Alu -6 306 5 226 373 108 0 chr11 119444787 119444889 -31338664 + L2 LINE L2 3151 3263 -9 29 60 0 0 chr11 119445904 119445954 -31337599 + AT_rich Low_complexity Low_complexity 1 50 0 2131 99 0 14 chr11 119446471 119446754 -31336799 + AluSq SINE Alu 6 284 -29 234 0 0 0 chr11 119446754 119446780 -31336773 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 393 111 12 37 chr11 119448336 119448417 -31335136 - MER116 DNA Mariner 0 80 2 1376 207 3 41 chr11 119450334 119450648 -31332905 + AluJo SINE Alu 1 302 -10 251 213 0 0 chr11 119450665 119450712 -31332841 - MER58 DNA MER1_type 0 2420 2374 1159 220 62 17 chr11 119450812 119451103 -31332450 - L1MC4a LINE L1 -1971 5837 5534 882 222 5 16 chr11 119451750 119451939 -31331614 - MER5A DNA MER1_type 0 189 3 2080 124 0 10 chr11 119452386 119452684 -31330869 + AluSx SINE Alu 1 295 -17 1866 169 3 7 chr11 119452692 119452987 -31330566 + AluJo SINE Alu 1 294 -18 607 233 60 0 chr11 119453699 119453849 -31329704 + MER105 DNA DNA 5 163 -41 354 322 56 14 chr11 119454254 119454397 -31329156 - L2 LINE L2 0 3313 3165 1024 222 37 24 chr11 119454479 119454776 -31328777 - L1MC5 LINE L1 -30 7931 7631 386 301 134 34 chr11 119454779 119455018 -31328535 + L2 LINE L2 2454 2716 -598 1059 184 135 35 chr11 119455028 119455310 -31328243 + MER2 DNA MER2_type 11 320 -25 822 261 120 71 chr11 119455325 119455870 -31327683 + L2 LINE L2 2723 3313 0 718 260 133 41 chr11 119456038 119456301 -31327252 + L1ME3A LINE L1 5381 5618 -503 1552 93 36 13 chr11 119456301 119456526 -31327027 - MER30 DNA MER1_type 0 230 1 718 260 133 41 chr11 119456526 119456864 -31326689 + L1ME3A LINE L1 5618 6025 -96 22 0 0 0 chr11 119457001 119457023 -31326530 + AT_rich Low_complexity Low_complexity 1 22 0 786 167 0 0 chr11 119457985 119458111 -31325442 + FLAM_A SINE Alu 1 126 -7 404 224 245 51 chr11 119458229 119458425 -31325128 - MIR SINE MIR -3 259 26 391 325 105 55 chr11 119458907 119459044 -31324509 - L2 LINE L2 -701 2613 2484 1701 173 7 17 chr11 119459044 119459339 -31324214 + AluJo SINE Alu 4 295 -17 391 325 105 55 chr11 119459339 119459583 -31323970 - L2 LINE L2 -830 2484 2213 190 321 0 0 chr11 119460759 119460812 -31322741 - MIR3 SINE MIR -5 203 151 182 277 31 46 chr11 119460985 119461050 -31322503 - MIR SINE MIR -127 81 18 182 388 190 3 chr11 119462008 119462297 -31321256 - L2 LINE L2 -400 2914 2572 379 318 158 46 chr11 119463647 119463888 -31319665 - L2 LINE L2 -1274 2040 1827 2154 104 10 0 chr11 119463888 119464177 -31319376 + AluY SINE Alu 2 293 -18 379 318 158 46 chr11 119464177 119464712 -31318841 - L2 LINE L2 -1487 1827 1177 2159 201 123 18 chr11 119465343 119465889 -31317664 + L1ME3A LINE L1 5544 6146 -24 671 243 136 48 chr11 119465893 119466285 -31317268 - MLT1F1 LTR MaLR -4 563 120 2146 212 110 12 chr11 119466403 119467001 -31316552 + L1MDa LINE L1 812 1468 -5072 2611 140 47 55 chr11 119467105 119467654 -31315899 + L1MD1 LINE L1 5686 6230 -12 1987 120 17 3 chr11 119467660 119467951 -31315602 - AluSq SINE Alu -18 295 1 26 0 0 0 chr11 119467951 119467977 -31315576 + AT_rich Low_complexity Low_complexity 1 26 0 760 195 0 0 chr11 119468439 119468562 -31314991 + FLAM_A SINE Alu 1 123 -10 486 0 0 0 chr11 119468563 119468617 -31314936 + (CA)n Simple_repeat Simple_repeat 2 55 0 196 274 113 0 chr11 119469143 119469205 -31314348 - L2 LINE L2 -4 3268 3200 232 290 174 36 chr11 119470160 119470298 -31313255 + MER5B DNA MER1_type 17 173 -5 2356 95 0 13 chr11 119470764 119471070 -31312483 + AluSq SINE Alu 1 302 -11 348 168 274 18 chr11 119471290 119471403 -31312150 - L2 LINE L2 -459 2855 2714 42796 34 21 1 chr11 119471441 119477508 -31306045 + L1PA2 LINE L1 1 6189 0 1160 179 9 27 chr11 119477971 119478194 -31305359 + MER20 DNA MER1_type 1 219 0 23 0 0 0 chr11 119478420 119478443 -31305110 + AT_rich Low_complexity Low_complexity 1 23 0 2273 87 6 53 chr11 119480242 119480564 -31302989 + AluSq SINE Alu 1 307 -6 490 265 128 28 chr11 119480666 119481096 -31302457 - L1MEd LINE L1 -4993 1126 654 1215 245 57 60 chr11 119481194 119481506 -31302047 - L1MEd LINE L1 -5645 474 162 2294 86 0 0 chr11 119481506 119481796 -31301757 - AluY SINE Alu -21 290 1 1215 245 57 60 chr11 119481796 119481953 -31301600 - L1MEd LINE L1 -5957 162 6 491 288 185 53 chr11 119482386 119482726 -31300827 + L3 LINE CR1 380 764 -813 413 117 0 0 chr11 119482755 119482815 -31300738 + Alu SINE Alu 240 299 -13 616 283 49 39 chr11 119483065 119483270 -31300283 + L3 LINE CR1 854 1060 -517 337 320 86 16 chr11 119483619 119483747 -31299806 - L2 LINE L2 0 3272 3136 266 321 36 14 chr11 119484307 119484447 -31299106 - L1P4 LINE L1 -697 5468 5326 232 229 0 48 chr11 119484462 119484545 -31299008 - L1M4 LINE L1 -893 5253 5175 711 243 69 105 chr11 119484634 119485387 -31298166 - L1M4 LINE L1 -1680 4466 3741 1560 180 87 6 chr11 119485390 119485735 -31297818 - MER99 DNA DNA -1 827 455 3286 161 38 27 chr11 119485752 119486458 -31297095 - L1MB2 LINE L1 -21 6150 5437 892 207 75 11 chr11 119486466 119486681 -31296872 - MER99 DNA DNA -410 418 218 330 26 0 0 chr11 119486681 119486720 -31296833 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 2154 99 3 0 chr11 119486720 119487002 -31296551 - AluSx SINE Alu -29 283 1 892 207 75 11 chr11 119487002 119487051 -31296502 - MER99 DNA DNA -609 219 136 1448 193 181 11 chr11 119487214 119487317 -31296236 + L1M4 LINE L1 3568 3652 -2494 1753 138 24 30 chr11 119487317 119487615 -31295938 + AluSx SINE Alu 14 309 -3 1448 193 181 11 chr11 119487615 119488046 -31295507 + L1M4 LINE L1 3652 4193 -1953 41873 35 10 0 chr11 119488046 119494137 -31289416 + L1PA3 LINE L1 3 6152 -3 1362 316 87 48 chr11 119494490 119495929 -31287624 + ERVL LTR ERVL 3481 4996 -642 333 337 35 12 chr11 119495929 119496101 -31287452 + LTR16C LTR ERVL 216 391 -100 278 234 117 0 chr11 119496160 119496237 -31287316 + LTR16C LTR ERVL 404 489 -2 2589 179 96 8 chr11 119496253 119496774 -31286779 + MLT1F1 LTR MaLR 1 567 0 771 291 39 0 chr11 119497883 119498086 -31285467 + MIR SINE MIR 47 257 -5 1711 184 31 0 chr11 119498363 119498657 -31284896 - AluJo SINE Alu -9 303 1 211 268 176 7 chr11 119498663 119498805 -31284748 - L2 LINE L2 -599 2715 2550 796 250 98 0 chr11 119498829 119499033 -31284520 - MIR SINE MIR -11 251 28 1463 153 62 4 chr11 119499039 119499281 -31284272 + AluSg SINE Alu 37 292 -18 2143 111 17 3 chr11 119500386 119500684 -31282869 + AluY SINE Alu 1 302 -9 2226 83 0 10 chr11 119500731 119501020 -31282533 - AluSq SINE Alu -1 312 27 1974 145 0 0 chr11 119501126 119501416 -31282137 - AluJo SINE Alu -22 290 1 2125 78 0 51 chr11 119503262 119503582 -31279971 - AluY SINE Alu 0 305 1 2178 115 3 6 chr11 119503599 119503911 -31279642 - AluY SINE Alu 0 311 1 246 316 7 22 chr11 119504492 119504678 -31278875 + T-rich Low_complexity Low_complexity 1 183 0 3761 149 26 64 chr11 119504847 119504968 -31278585 - L1MB8 LINE L1 -2 6176 6052 2222 114 10 0 chr11 119504968 119505266 -31278287 - AluSq SINE Alu -12 301 1 3761 149 26 64 chr11 119505266 119505507 -31278046 - L1MB8 LINE L1 -126 6052 5803 818 150 0 23 chr11 119505507 119505640 -31277913 - FLAM_C SINE Alu -2 131 2 3761 149 26 64 chr11 119505640 119505661 -31277892 - L1MB8 LINE L1 -375 5803 5783 1663 153 26 4 chr11 119505661 119505929 -31277624 - AluJo SINE Alu -38 274 1 3761 149 26 64 chr11 119505929 119506341 -31277212 - L1MB8 LINE L1 -395 5783 5409 341 296 52 7 chr11 119507228 119507363 -31276190 - MIR3 SINE MIR -1 207 67 305 237 59 74 chr11 119507425 119507487 -31276066 - MIR SINE MIR -26 236 175 2295 93 3 0 chr11 119507487 119507788 -31275765 + AluSg SINE Alu 1 302 -8 305 237 59 74 chr11 119507788 119507860 -31275693 - MIR SINE MIR -87 175 104 692 158 18 9 chr11 119507873 119507987 -31275566 + FLAM_C SINE Alu 2 116 -17 26 0 0 0 chr11 119507987 119508013 -31275540 + AT_rich Low_complexity Low_complexity 1 26 0 476 288 68 42 chr11 119508302 119508436 -31275117 + MIR SINE MIR 8 150 -112 1840 177 0 7 chr11 119508436 119508735 -31274818 + AluJo SINE Alu 1 297 -15 476 288 68 42 chr11 119508735 119508791 -31274762 + MIR SINE MIR 150 203 -59 726 153 0 0 chr11 119508806 119508917 -31274636 + AluJo/FLAM SINE Alu 11 121 -191 2264 80 28 0 chr11 119508917 119509204 -31274349 - AluSg SINE Alu -15 295 1 2463 60 0 3 chr11 119509208 119509508 -31274045 - AluY SINE Alu -12 299 1 31 0 0 0 chr11 119509508 119509539 -31274014 + AT_rich Low_complexity Low_complexity 1 31 0 289 211 0 0 chr11 119509544 119509596 -31273957 + MIR SINE MIR 192 243 -19 200 281 94 16 chr11 119509602 119509666 -31273887 - L2 LINE L2 -45 3268 3200 1991 130 0 0 chr11 119509711 119509980 -31273573 - AluSx SINE Alu -43 269 1 2199 91 0 14 chr11 119510137 119510470 -31273083 + AluY SINE Alu 1 329 0 1889 157 10 0 chr11 119510632 119510937 -31272616 + AluSx SINE Alu 1 308 -4 723 335 115 34 chr11 119511369 119512087 -31271466 - L2 LINE L2 0 3272 2329 2028 292 101 22 chr11 119512222 119513280 -31270273 - ERVL LTR ERVL -1089 4675 3534 2285 107 0 0 chr11 119513380 119513678 -31269875 - AluSx SINE Alu -14 298 1 26 30 0 0 chr11 119514119 119514152 -31269401 + AT_rich Low_complexity Low_complexity 1 33 0 5439 53 1 4 chr11 119514470 119515154 -31268399 - L1PA7 LINE L1 -3 6151 5470 943 204 0 0 chr11 119515564 119515726 -31267827 - AluJb SINE Alu -5 307 146 1338 154 35 94 chr11 119515819 119516137 -31267416 - AluJb SINE Alu -3 309 11 186 210 210 10 chr11 119516337 119516437 -31267116 - L2 LINE L2 -1 3312 3193 2333 101 0 0 chr11 119517157 119517464 -31266089 + AluY SINE Alu 1 307 -4 2124 113 7 17 chr11 119517480 119517781 -31265772 + AluSx SINE Alu 1 298 -14 1942 149 0 3 chr11 119517970 119518259 -31265294 + AluJb SINE Alu 1 288 -24 888 305 154 14 chr11 119518354 119518796 -31264757 + L2 LINE L2 2810 3313 0 483 250 226 24 chr11 119519605 119519791 -31263762 - MIR SINE MIR -7 255 20 2353 137 42 21 chr11 119519791 119520216 -31263337 - Tigger2a DNA MER2_type 0 434 1 483 250 226 24 chr11 119520216 119520241 -31263312 - MIR SINE MIR -242 20 1 2223 110 3 17 chr11 119520577 119520877 -31262676 + AluSx SINE Alu 1 296 -16 183 329 38 38 chr11 119521133 119521212 -31262341 + L2 LINE L2 3179 3257 -56 2122 132 3 0 chr11 119521220 119521530 -31262023 - AluSx SINE Alu -1 311 1 376 229 10 21 chr11 119522028 119522124 -31261429 + MIR3 SINE MIR 113 207 -1 1967 132 12 9 chr11 119522440 119522780 -31260773 + L1MA4 LINE L1 5959 6299 -1 754 153 25 13 chr11 119522909 119523066 -31260487 + Charlie1 DNA MER1_type 2386 2544 -217 331 185 27 4 chr11 119523066 119523214 -31260339 - MER2 DNA MER2_type 0 345 141 288 288 126 9 chr11 119523305 119523416 -31260137 - MER2 DNA MER2_type -221 124 1 697 168 86 38 chr11 119523416 119523625 -31259928 + Charlie1 DNA MER1_type 2543 2761 0 239 203 17 34 chr11 119524792 119524851 -31258702 + MIR SINE MIR 89 146 -116 213 94 0 0 chr11 119524936 119524968 -31258585 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 199 250 0 21 chr11 119525003 119525051 -31258502 + MIR SINE MIR 210 256 -6 23 33 0 0 chr11 119525361 119525391 -31258162 + AT_rich Low_complexity Low_complexity 1 30 0 2112 108 0 7 chr11 119525893 119526202 -31257351 - AluSx SINE Alu 0 307 1 820 179 20 0 chr11 119526344 119526495 -31257058 + MIR SINE MIR 98 251 -11 2113 96 7 4 chr11 119527317 119527620 -31255933 - AluSx SINE Alu 0 304 1 1636 77 45 5 chr11 119527740 119527961 -31255592 + MER30 DNA MER1_type 1 230 0 745 114 0 65 chr11 119528475 119528598 -31254955 - AluJb SINE Alu -6 306 192 447 329 14 14 chr11 119528730 119528876 -31254677 - L2 LINE L2 -192 3080 2935 748 111 37 176 chr11 119529500 119529716 -31253837 - AluSc SINE Alu 0 309 124 23 33 0 0 chr11 119529802 119529832 -31253721 + AT_rich Low_complexity Low_complexity 1 30 0 192 312 208 0 chr11 119529854 119529931 -31253622 - L2 LINE L2 -35 3237 3145 2075 92 0 11 chr11 119530319 119530591 -31252962 - AluSq SINE Alu -18 295 27 1960 148 0 0 chr11 119530697 119530987 -31252566 - AluJo SINE Alu -22 290 1 2102 85 0 51 chr11 119532833 119533153 -31250400 - AluY SINE Alu 0 305 1 2203 112 3 6 chr11 119533171 119533483 -31250070 - AluY SINE Alu 0 311 1 246 316 7 22 chr11 119534064 119534250 -31249303 + T-rich Low_complexity Low_complexity 1 183 0 3723 150 26 64 chr11 119534419 119534540 -31249013 - L1MB8 LINE L1 -2 6176 6052 2235 111 10 0 chr11 119534540 119534838 -31248715 - AluSq SINE Alu -12 301 1 3723 150 26 64 chr11 119534838 119535079 -31248474 - L1MB8 LINE L1 -126 6052 5803 818 150 0 23 chr11 119535079 119535212 -31248341 - FLAM_C SINE Alu -2 131 2 3723 150 26 64 chr11 119535212 119535233 -31248320 - L1MB8 LINE L1 -375 5803 5783 1663 153 26 4 chr11 119535233 119535501 -31248052 - AluJo SINE Alu -38 274 1 3723 150 26 64 chr11 119535501 119535913 -31247640 - L1MB8 LINE L1 -395 5783 5409 341 296 52 7 chr11 119536800 119536935 -31246618 - MIR3 SINE MIR -1 207 67 305 237 59 74 chr11 119536997 119537059 -31246494 - MIR SINE MIR -26 236 175 2278 94 3 0 chr11 119537059 119537358 -31246195 + AluSg SINE Alu 1 300 -10 305 237 59 74 chr11 119537358 119537430 -31246123 - MIR SINE MIR -87 175 104 671 167 18 9 chr11 119537443 119537557 -31245996 + FLAM_C SINE Alu 2 116 -17 26 0 0 0 chr11 119537557 119537583 -31245970 + AT_rich Low_complexity Low_complexity 1 26 0 471 290 67 42 chr11 119537871 119538007 -31245546 + MIR SINE MIR 6 150 -112 1828 181 0 7 chr11 119538007 119538306 -31245247 + AluJo SINE Alu 1 297 -15 471 290 67 42 chr11 119538306 119538362 -31245191 + MIR SINE MIR 150 203 -59 534 216 0 0 chr11 119538377 119538488 -31245065 + AluJo/FLAM SINE Alu 11 121 -191 2221 87 28 0 chr11 119538488 119538775 -31244778 - AluSg SINE Alu -15 295 1 2463 60 0 3 chr11 119538779 119539079 -31244474 - AluY SINE Alu -12 299 1 31 0 0 0 chr11 119539079 119539110 -31244443 + AT_rich Low_complexity Low_complexity 1 31 0 289 211 0 0 chr11 119539115 119539167 -31244386 + MIR SINE MIR 192 243 -19 200 281 94 16 chr11 119539173 119539237 -31244316 - L2 LINE L2 -45 3268 3200 1991 130 0 0 chr11 119539282 119539551 -31244002 - AluSx SINE Alu -43 269 1 1265 341 67 14 chr11 119539817 119540623 -31242930 - ERVL LTR ERVL -2428 3336 2488 2348 100 0 13 chr11 119540769 119541078 -31242475 + AluSg SINE Alu 1 305 -5 3035 94 19 25 chr11 119541242 119541722 -31241831 + LTR15 LTR ERV1 1 477 -16 387 363 17 12 chr11 119541918 119542158 -31241395 - ERVL LTR ERVL -4703 1061 821 22 0 0 0 chr11 119542497 119542519 -31241034 + AT_rich Low_complexity Low_complexity 1 22 0 2404 232 93 29 chr11 119542522 119543758 -31239795 - L1ME1 LINE L1 -4 6162 4833 375 96 0 55 chr11 119543758 119543831 -31239722 - AluYb8 SINE Alu -1 307 239 1379 224 45 23 chr11 119543831 119544184 -31239369 - ERVL LTR ERVL -1639 4125 3765 343 257 27 8 chr11 119544242 119544348 -31239205 + MLT1H1 LTR MaLR 103 236 -313 2228 68 0 68 chr11 119544351 119544673 -31238880 - AluY SINE Alu -11 300 1 587 183 32 0 chr11 119544676 119544802 -31238751 - L1ME1 LINE L1 -1308 4838 4709 2182 159 64 28 chr11 119544802 119545274 -31238279 + LTR22B LTR ERVK 1 489 -3 256 343 0 0 chr11 119546134 119546204 -31237349 + L2 LINE L2 3244 3313 0 481 151 0 0 chr11 119546260 119546346 -31237207 - AluS SINE Alu -1 308 223 254 128 0 0 chr11 119546346 119546385 -31237168 - Alu SINE Alu -263 39 1 38 0 0 0 chr11 119546609 119546647 -31236906 + AT_rich Low_complexity Low_complexity 1 38 0 34 62 0 12 chr11 119547229 119547267 -31236286 + AT_rich Low_complexity Low_complexity 1 38 -41 1782 158 7 34 chr11 119547267 119547564 -31235989 - AluJo SINE Alu -23 289 1 34 62 0 12 chr11 119547564 119547605 -31235948 + AT_rich Low_complexity Low_complexity 38 79 0 2287 87 40 0 chr11 119547607 119547906 -31235647 + AluY SINE Alu 1 311 0 516 162 0 40 chr11 119547931 119548070 -31235483 - L1PA10 LINE L1 0 6168 6068 2084 103 18 4 chr11 119548337 119548685 -31234868 + AluSq SINE Alu 1 352 0 751 219 34 59 chr11 119548980 119549336 -31234217 - L1ME3 LINE L1 -27 6135 5612 1417 180 50 36 chr11 119549355 119549578 -31233975 + Tigger5 DNA MER2_type 1 219 -2104 2078 133 27 9 chr11 119549578 119549909 -31233644 + MER1B DNA MER1_type 1 337 0 1417 180 50 36 chr11 119549909 119550048 -31233505 + Tigger5 DNA MER2_type 219 2323 0 897 209 43 0 chr11 119550066 119550277 -31233276 - L1ME3 LINE L1 -577 5587 5368 265 167 0 0 chr11 119550284 119550338 -31233215 - L1ME3 LINE L1 -2894 3252 3199 1377 191 0 4 chr11 119550353 119550594 -31232959 - AluJb SINE Alu -67 245 6 1519 255 95 45 chr11 119550600 119550641 -31232912 - L1ME3 LINE L1 -2977 3169 3132 2207 122 0 6 chr11 119550641 119550953 -31232600 - AluSg SINE Alu 0 310 1 1519 255 95 45 chr11 119550953 119551720 -31231833 - L1ME3 LINE L1 -3014 3132 2301 2011 127 47 3 chr11 119551720 119552019 -31231534 - AluSx SINE Alu 0 312 1 1519 255 95 45 chr11 119552019 119552184 -31231369 - L1ME3 LINE L1 -3845 2301 2146 733 186 29 40 chr11 119552193 119552474 -31231079 + L1MEc LINE L1 2283 2563 -3863 1027 239 0 13 chr11 119552477 119552711 -31230842 + AluJb SINE Alu 82 312 0 1019 263 29 3 chr11 119552713 119553133 -31230420 + L1MEc LINE L1 2573 3035 -3391 1107 223 4 0 chr11 119553136 119553387 -31230166 - L1PB4 LINE L1 -1 6155 5904 1145 191 4 4 chr11 119553388 119553618 -31229935 - L1 LINE L1 -1913 4233 4004 7673 191 56 65 chr11 119553624 119556346 -31227207 + L1MEc LINE L1 3029 5726 -898 2015 120 30 3 chr11 119556346 119556645 -31226908 + AluSx SINE Alu 3 309 -3 7673 191 56 65 chr11 119556645 119556829 -31226724 + L1MEc LINE L1 5726 5910 -714 969 225 53 91 chr11 119557039 119557205 -31226348 + L1ME3A LINE L1 2171 2342 -3873 2081 130 3 16 chr11 119557205 119557521 -31226032 + AluSx SINE Alu 1 312 0 969 225 53 91 chr11 119557521 119557624 -31225929 + L1ME3A LINE L1 2342 2447 -3768 1865 61 4 16 chr11 119557624 119557871 -31225682 + L1PA7 LINE L1 5908 6151 -3 969 225 53 91 chr11 119557871 119558288 -31225265 + L1ME3A LINE L1 2447 2793 -3422 2858 248 81 30 chr11 119558381 119559362 -31224191 + L1ME3A LINE L1 2983 4069 -2146 1876 158 3 16 chr11 119559362 119559665 -31223888 + AluJo SINE Alu 3 301 -11 2858 248 81 30 chr11 119559665 119560195 -31223358 + L1ME3A LINE L1 4069 4571 -1644 648 302 103 29 chr11 119560197 119560614 -31222939 - LTR16A LTR ERVL -2 448 1 353 267 0 0 chr11 119560615 119560716 -31222837 + L1ME3A LINE L1 4587 4687 -1528 1012 110 0 0 chr11 119560723 119560859 -31222694 - FLAM_C SINE Alu -7 136 1 240 139 349 0 chr11 119560900 119560986 -31222567 - L1MB5 LINE L1 -17 6157 6042 2760 13 0 0 chr11 119561128 119561428 -31222125 - AluYa5 SINE Alu -7 304 5 5483 51 7 4 chr11 119561432 119562124 -31221429 + L1PA7 LINE L1 5461 6154 0 2022 161 0 0 chr11 119562169 119562479 -31221074 + AluJo SINE Alu 1 310 -2 331 177 13 0 chr11 119562487 119562566 -31220987 + L1ME3A LINE L1 5175 5254 -961 641 184 18 36 chr11 119562567 119562735 -31220818 + L1MC5 LINE L1 7766 7930 -31 3454 164 10 32 chr11 119562812 119563430 -31220123 + L1MB3 LINE L1 5509 6112 -71 2415 67 0 35 chr11 119563430 119563744 -31219809 - AluY SINE Alu -8 303 1 3454 164 10 32 chr11 119563744 119563806 -31219747 + L1MB3 LINE L1 6112 6174 -9 2089 155 0 3 chr11 119563949 119564258 -31219295 + AluJb SINE Alu 5 312 0 441 0 0 0 chr11 119564281 119564330 -31219223 + (CA)n Simple_repeat Simple_repeat 2 50 0 1251 288 90 22 chr11 119564383 119565021 -31218532 + L1ME3A LINE L1 5550 6231 -8 754 293 65 8 chr11 119565521 119565767 -31217786 + MIR SINE MIR 3 262 0 560 245 77 117 chr11 119566249 119566619 -31216934 - MLT1H1 LTR MaLR -5 550 167 297 109 0 0 chr11 119566619 119566674 -31216879 + (TA)n Simple_repeat Simple_repeat 2 56 0 2151 92 0 11 chr11 119566674 119566991 -31216562 + AluY SINE Alu 2 315 0 560 245 77 117 chr11 119566991 119567103 -31216450 - MLT1H1 LTR MaLR -386 169 103 6105 236 65 45 chr11 119567178 119567602 -31215951 + ERVL LTR ERVL 3765 4179 -1585 2317 105 0 0 chr11 119567602 119567897 -31215656 + AluSx SINE Alu 3 297 -15 6105 236 65 45 chr11 119567897 119569190 -31214363 + ERVL LTR ERVL 4179 5528 -236 1425 142 73 156 chr11 119569190 119569741 -31213812 + MLT1D LTR MaLR 1 505 0 6105 236 65 45 chr11 119569741 119569976 -31213577 + ERVL LTR ERVL 5528 5757 -7 395 192 75 17 chr11 119569884 119570004 -31213549 + Ricksha DNA DNA 250 376 -2870 * 601 260 39 56 chr11 119570004 119570362 -31213191 + L1MEc LINE L1 1370 1721 -4675 1394 180 0 101 chr11 119570370 119570676 -31212877 + AluJo SINE Alu 18 292 -20 2458 76 3 19 chr11 119570801 119571115 -31212438 + AluSc SINE Alu 1 309 0 2376 206 12 54 chr11 119571128 119571655 -31211898 + L1M4 LINE L1 4500 4993 -1153 2017 136 3 0 chr11 119571655 119571941 -31211612 + AluSx SINE Alu 9 295 -17 2376 206 12 54 chr11 119571941 119572099 -31211454 + L1M4 LINE L1 4993 5156 -990 2264 92 0 10 chr11 119572101 119572394 -31211159 + AluSx SINE Alu 1 290 -22 1127 158 0 135 chr11 119572394 119572423 -31211130 - AluJo SINE Alu -82 230 199 1850 155 26 10 chr11 119572423 119572726 -31210827 + AluJb SINE Alu 1 308 -4 1127 158 0 135 chr11 119572726 119572962 -31210591 - AluJo SINE Alu -113 199 1 755 286 96 31 chr11 119572962 119573515 -31210038 - L1MEc LINE L1 -4752 1644 1056 546 194 0 0 chr11 119573528 119573636 -31209917 - L1MEc LINE L1 -5651 745 638 747 258 33 28 chr11 119573746 119574137 -31209416 - L1MEc LINE L1 -3910 2486 2094 12791 41 8 2 chr11 119574229 119576594 -31206959 - L1PA5 LINE L1 -2 6152 3775 11609 33 3 1 chr11 119576601 119578760 -31204793 - L1PA4 LINE L1 -3 6152 3981 2374 188 29 38 chr11 119578860 119579419 -31204134 - L1 LINE L1 -2323 3823 3270 2313 94 10 0 chr11 119579419 119579717 -31203836 - AluSp SINE Alu -12 301 1 708 207 0 0 chr11 119579729 119579876 -31203677 - FLAM_A SINE Alu 0 149 3 1441 174 26 6 chr11 119579878 119580229 -31203324 - L1 LINE L1 -2880 3266 2909 * 1774 153 42 3 chr11 119580228 119580561 -31202992 + L1 LINE L1 3998 4343 -1803 232 190 101 0 chr11 119580576 119580655 -31202898 + L1M4 LINE L1 4182 4268 -1878 2461 92 0 0 chr11 119580655 119580960 -31202593 + AluSg SINE Alu 1 305 -5 1739 188 0 3 chr11 119580991 119581289 -31202264 + AluJb SINE Alu 1 297 -15 1189 214 77 71 chr11 119581290 119581619 -31201934 + L1M4 LINE L1 4787 5121 -1025 1867 164 23 0 chr11 119581619 119581924 -31201629 + AluJo SINE Alu 1 312 0 1189 214 77 71 chr11 119581924 119582090 -31201463 + L1M4 LINE L1 5121 5285 -861 420 249 80 80 chr11 119582360 119582481 -31201072 + HAL1 LINE L1 2256 2376 -131 2140 110 0 7 chr11 119582481 119582773 -31200780 + AluSg1 SINE Alu 1 290 -19 420 249 80 80 chr11 119582773 119582900 -31200653 + HAL1 LINE L1 2375 2504 -3 252 243 27 14 chr11 119582923 119582997 -31200556 - HAL1 LINE L1 -359 2148 2074 215 245 0 0 chr11 119583263 119583316 -31200237 + T-rich Low_complexity Low_complexity 1 53 0 913 120 107 0 chr11 119583348 119583498 -31200055 + AluSg/x SINE Alu 140 305 -7 228 252 50 50 chr11 119583827 119583946 -31199607 - L1MC4a LINE L1 -1633 6175 6057 396 0 0 0 chr11 119584846 119584890 -31198663 + (CA)n Simple_repeat Simple_repeat 2 45 0 709 226 0 0 chr11 119585107 119585231 -31198322 + FLAM_A SINE Alu 1 124 -9 222 158 0 0 chr11 119585758 119585796 -31197757 + L2 LINE L2 3263 3300 -13 267 103 0 0 chr11 119585845 119585884 -31197669 + (TTG)n Simple_repeat Simple_repeat 1 39 0 2058 89 4 0 chr11 119585884 119586143 -31197410 - AluSp SINE Alu -53 260 1 292 137 0 239 chr11 119586175 119586238 -31197315 + L1MB8 LINE L1 6081 6107 -77 2156 117 7 0 chr11 119586238 119586529 -31197024 + AluSx SINE Alu 1 293 -19 292 137 0 239 chr11 119586529 119586582 -31196971 + L1MB8 LINE L1 6107 6171 -13 21 0 0 0 chr11 119586714 119586735 -31196818 + AT_rich Low_complexity Low_complexity 1 21 0 1708 148 57 34 chr11 119586741 119587039 -31196514 - AluJo SINE Alu -7 305 1 27 73 0 0 chr11 119587105 119587160 -31196393 + AT_rich Low_complexity Low_complexity 1 55 0 1709 175 0 10 chr11 119587166 119587458 -31196095 - AluJo SINE Alu -18 294 6 260 340 162 5 chr11 119587490 119587675 -31195878 - MIR SINE MIR -44 218 5 1663 158 3 24 chr11 119587967 119588259 -31195294 + AluJo SINE Alu 12 297 -15 770 270 20 28 chr11 119588637 119588885 -31194668 + MIR SINE MIR 16 261 -1 2185 133 0 0 chr11 119589043 119589344 -31194209 - AluSx SINE Alu -10 302 2 258 200 18 0 chr11 119589351 119589406 -31194147 - L1ME LINE L1 -461 5660 5605 929 101 0 0 chr11 119589411 119589540 -31194013 - AluSc SINE Alu -7 302 174 1838 102 0 0 chr11 119589540 119589776 -31193777 - AluSc SINE Alu -71 238 3 292 202 64 32 chr11 119590429 119590523 -31193030 - MER63 DNA MER1_type -457 604 508 726 256 102 74 chr11 119590543 119590821 -31192732 - L2 LINE L2 -1313 2001 1703 2334 90 10 3 chr11 119590821 119591132 -31192421 + AluSp SINE Alu 1 313 0 726 256 102 74 chr11 119591132 119591314 -31192239 - L2 LINE L2 -1611 1703 1528 2019 145 3 0 chr11 119591410 119591713 -31191840 + AluSx SINE Alu 1 304 -8 21 67 0 17 chr11 119592916 119592953 -31190600 + AT_rich Low_complexity Low_complexity 1 38 -21 1729 116 0 68 chr11 119592953 119593264 -31190289 - AluJb SINE Alu -22 290 1 21 67 0 17 chr11 119593264 119593286 -31190267 + AT_rich Low_complexity Low_complexity 38 59 0 1178 72 0 0 chr11 119593940 119594079 -31189474 + AluSq/x SINE Alu 1 139 -173 922 89 0 0 chr11 119594079 119594191 -31189362 - AluY SINE Alu -128 183 72 1052 96 0 32 chr11 119594191 119594347 -31189206 + AluSc SINE Alu 143 293 -16 556 125 62 0 chr11 119594359 119594455 -31189098 + L1MB3 LINE L1 6081 6182 -1 564 43 0 149 chr11 119594575 119594669 -31188884 - MADE1 DNA Mariner 0 80 1 228 258 16 16 chr11 119595006 119595068 -31188485 + CT-rich Low_complexity Low_complexity 5 66 0 2444 97 0 0 chr11 119595657 119595968 -31187585 - AluY SINE Alu 0 311 1 219 69 0 0 chr11 119596020 119596049 -31187504 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 3927 142 18 69 chr11 119596054 119596775 -31186778 - LTR8 LTR ERV1 0 691 7 1706 165 25 21 chr11 119596775 119597060 -31186493 - AluJo SINE Alu -26 286 1 24 32 0 0 chr11 119597238 119597269 -31186284 + AT_rich Low_complexity Low_complexity 1 31 0 2394 92 0 10 chr11 119598173 119598479 -31185074 - AluSx SINE Alu -9 303 1 1980 120 11 3 chr11 119599453 119599804 -31183749 + Tigger4(Zombi) DNA MER2_type 1 2729 -2 2005 151 0 6 chr11 119600574 119600886 -31182667 - AluJb SINE Alu 0 312 3 1030 153 108 45 chr11 119601035 119601257 -31182296 + AluJb SINE Alu 38 273 -39 2193 95 7 0 chr11 119601267 119601552 -31182001 - AluSq SINE Alu -26 287 1 230 288 17 0 chr11 119602017 119602076 -31181477 - MIR3 SINE MIR -24 184 125 1983 125 14 4 chr11 119602239 119602549 -31181004 + AluSx SINE Alu 1 313 0 2075 127 3 0 chr11 119602986 119603316 -31180237 + AluSx SINE Alu 1 331 0 23 33 0 0 chr11 119604934 119604964 -31178589 + AT_rich Low_complexity Low_complexity 1 30 0 2040 127 0 7 chr11 119604964 119605255 -31178298 - AluSx SINE Alu -23 289 1 207 305 19 104 chr11 119605300 119605454 -31178099 - MIR SINE MIR -49 213 73 212 265 59 78 chr11 119605508 119605610 -31177943 - MIR SINE MIR -56 206 107 196 265 103 0 chr11 119605849 119605917 -31177636 - MIR SINE MIR -115 93 19 2301 95 20 0 chr11 119607591 119607895 -31175658 + AluSg SINE Alu 1 310 0 374 370 7 13 chr11 119608053 119608207 -31175346 + L2 LINE L2 2538 2690 -624 215 345 100 40 chr11 119608430 119608630 -31174923 + L2 LINE L2 2940 3151 -121 2059 141 0 0 chr11 119608783 119609088 -31174465 - AluSx SINE Alu 0 305 1 1107 139 124 40 chr11 119609149 119609350 -31174203 - MER20 DNA MER1_type -1 218 1 1981 100 41 0 chr11 119609606 119609908 -31173645 + AluSg SINE Alu 1 313 0 654 165 25 50 chr11 119610469 119610590 -31172963 + FLAM_A SINE Alu 5 122 -11 2120 117 0 0 chr11 119610756 119611077 -31172476 - AluSx SINE Alu 0 321 1 3309 98 8 108 chr11 119611899 119612498 -31171055 + MER4B LTR ERV1 1 539 -71 336 279 41 16 chr11 119612513 119612635 -31170918 + L1MEc LINE L1 172 296 -6100 326 60 80 0 chr11 119612635 119612685 -31170868 + MER4E LTR ERV1 706 759 -7 2202 88 0 80 chr11 119612687 119613026 -31170527 - AluSx SINE Alu 0 312 1 1373 246 10 48 chr11 119613054 119613127 -31170426 + L1MEc LINE L1 60 134 -6262 2314 115 0 3 chr11 119613127 119613439 -31170114 - AluSx SINE Alu -1 311 1 1373 246 10 48 chr11 119613439 119613763 -31169790 + L1MEc LINE L1 134 442 -5954 1214 165 5 0 chr11 119613985 119614185 -31169368 + L1MEc LINE L1 545 745 -5651 * 1731 261 77 42 chr11 119614162 119614751 -31168802 + L1MEc LINE L1 1018 1585 -4811 1463 155 0 136 chr11 119614751 119614987 -31168566 + AluJo SINE Alu 1 267 -45 1839 155 26 10 chr11 119614987 119615290 -31168263 - AluJb SINE Alu -4 308 1 1463 155 0 136 chr11 119615290 119615319 -31168234 + AluJo SINE Alu 267 208 -104 2146 106 0 10 chr11 119615319 119615612 -31167941 - AluSx SINE Alu -22 290 1 1463 155 0 136 chr11 119615612 119615706 -31167847 + AluJo SINE Alu 207 312 0 1731 261 77 42 chr11 119615706 119615921 -31167632 + L1MEc LINE L1 1585 1850 -4546 183 264 40 112 chr11 119616412 119616456 -31167097 + L2 LINE L2 3197 3243 -70 1615 140 6 105 chr11 119616456 119616798 -31166755 - AluJo SINE Alu -4 308 1 183 264 40 112 chr11 119616798 119616878 -31166675 + L2 LINE L2 3243 3312 -1 373 263 91 108 chr11 119616938 119617188 -31166365 - L3b LINE CR1 -68 1515 1269 288 53 0 0 chr11 119617188 119617226 -31166327 + (CA)n Simple_repeat Simple_repeat 1 38 0 373 263 91 108 chr11 119617226 119617272 -31166281 - L3b LINE CR1 -314 1269 1224 25 31 0 0 chr11 119617585 119617617 -31165936 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr11 119618152 119618174 -31165379 + AT_rich Low_complexity Low_complexity 1 22 0 181 313 47 0 chr11 119618259 119618323 -31165230 + MIR3 SINE MIR 130 196 -12 2396 90 0 0 chr11 119618637 119618938 -31164615 + AluSg SINE Alu 4 304 -6 600 315 53 1 chr11 119619117 119619326 -31164227 - MIR SINE MIR -13 249 32 349 274 51 62 chr11 119619591 119619790 -31163763 + MIR SINE MIR 16 211 -51 221 230 95 27 chr11 119619932 119620006 -31163547 - L2 LINE L2 -5 3267 3189 571 269 0 0 chr11 119620009 119620143 -31163410 - Charlie4 DNA MER1_type -1827 134 1 1250 179 13 17 chr11 119620332 119620566 -31162987 - AluJb SINE Alu -63 249 17 899 153 169 37 chr11 119620770 119620959 -31162594 - AluJo SINE Alu -13 299 86 209 180 40 0 chr11 119621096 119621146 -31162407 + (TA)n Simple_repeat Simple_repeat 1 52 0 337 244 134 0 chr11 119621198 119621280 -31162273 + MER58B DNA MER1_type 2 94 -247 812 171 33 13 chr11 119621288 119621440 -31162113 + FRAM SINE Alu 4 158 -18 859 183 128 5 chr11 119621450 119621669 -31161884 + MER58B DNA MER1_type 96 341 0 395 332 157 24 chr11 119622012 119622343 -31161210 + L2 LINE L2 2897 3271 -1 24 77 0 0 chr11 119623195 119623247 -31160306 + GC_rich Low_complexity Low_complexity 1 52 0 1747 129 22 29 chr11 119623874 119624067 -31159486 - AluJo SINE Alu 0 312 120 435 38 0 0 chr11 119624067 119624120 -31159433 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1747 129 22 29 chr11 119624120 119624237 -31159316 - AluJo SINE Alu -192 120 4 234 250 0 0 chr11 119625614 119625666 -31157887 - L2 LINE L2 -1 3312 3261 1217 220 84 41 chr11 119625765 119626206 -31157347 - LTR40c LTR ERVL -5 460 1 466 322 14 14 chr11 119626234 119626380 -31157173 - L2 LINE L2 -192 3080 2935 825 111 37 176 chr11 119627004 119627220 -31156333 - AluSc SINE Alu 0 309 124 23 33 0 0 chr11 119627306 119627336 -31156217 + AT_rich Low_complexity Low_complexity 1 30 0 186 312 208 0 chr11 119627358 119627435 -31156118 - L2 LINE L2 -35 3237 3145 2112 123 7 0 chr11 119627823 119628115 -31155438 - AluSx SINE Alu -18 294 1 24 67 0 0 chr11 119628241 119628286 -31155267 + AT_rich Low_complexity Low_complexity 1 45 0 230 343 45 11 chr11 119628565 119628743 -31154810 - L1ME LINE L1 -301 5820 5637 212 143 24 0 chr11 119628947 119628989 -31154564 + CT-rich Low_complexity Low_complexity 2 44 0 2069 148 13 0 chr11 119628996 119629301 -31154252 - AluSx SINE Alu -3 309 1 1122 135 6 0 chr11 119629629 119629785 -31153768 - AluSg/x SINE Alu -29 281 125 1911 127 0 67 chr11 119629918 119630234 -31153319 - AluJo SINE Alu -17 295 1 1887 155 10 7 chr11 119630552 119630856 -31152697 + AluSx SINE Alu 5 309 -3 212 143 24 0 chr11 119630863 119630905 -31152648 + GA-rich Low_complexity Low_complexity 2 44 0 2323 90 3 10 chr11 119631333 119631632 -31151921 + AluSx SINE Alu 1 297 -15 442 273 53 37 chr11 119631704 119631891 -31151662 - L1M4 LINE L1 -6269 273 84 2258 90 7 0 chr11 119631897 119632187 -31151366 - AluSg SINE Alu -18 292 1 2213 201 123 18 chr11 119632617 119633163 -31150390 + L1ME3A LINE L1 5544 6146 -24 689 243 136 48 chr11 119633167 119633559 -31149994 - MLT1F1 LTR MaLR -4 563 120 2245 211 110 12 chr11 119633677 119634275 -31149278 + L1MDa LINE L1 812 1468 -5072 2829 142 47 55 chr11 119634379 119634928 -31148625 + L1MD1 LINE L1 5686 6230 -12 2001 120 17 3 chr11 119634934 119635225 -31148328 - AluSq SINE Alu -18 295 1 26 0 0 0 chr11 119635225 119635251 -31148302 + AT_rich Low_complexity Low_complexity 1 26 0 793 203 0 0 chr11 119635713 119635836 -31147717 + FLAM_A SINE Alu 1 123 -10 399 21 0 0 chr11 119635837 119635885 -31147668 + (CA)n Simple_repeat Simple_repeat 2 49 0 188 274 113 0 chr11 119636411 119636473 -31147080 - L2 LINE L2 -4 3268 3200 219 290 174 36 chr11 119637428 119637566 -31145987 + MER5B DNA MER1_type 17 173 -5 2387 94 0 13 chr11 119638032 119638339 -31145214 + AluSq SINE Alu 1 303 -10 348 168 274 18 chr11 119638561 119638674 -31144879 - L2 LINE L2 -459 2855 2714 43539 34 24 1 chr11 119638712 119644727 -31138826 + L1PA3 LINE L1 1 6155 0 2202 300 87 60 chr11 119645077 119646516 -31137037 + ERVL LTR ERVL 3520 4996 -768 388 337 35 12 chr11 119646516 119646688 -31136865 + LTR16C LTR ERVL 216 391 -100 311 234 117 0 chr11 119646747 119646824 -31136729 + LTR16C LTR ERVL 404 489 -2 2642 184 127 4 chr11 119646840 119647023 -31136530 + MLT1F1 LTR MaLR 1 160 -407 189 0 0 0 chr11 119647023 119647044 -31136509 + (TC)n Simple_repeat Simple_repeat 1 21 0 2642 184 127 4 chr11 119647044 119647365 -31136188 + MLT1F1 LTR MaLR 160 567 0 763 291 39 0 chr11 119648473 119648676 -31134877 + MIR SINE MIR 47 257 -5 1700 182 30 0 chr11 119648953 119649249 -31134304 - AluJo SINE Alu -7 305 1 222 261 176 7 chr11 119649255 119649397 -31134156 - L2 LINE L2 -599 2715 2550 787 250 98 0 chr11 119649421 119649625 -31133928 - MIR SINE MIR -11 251 28 1311 164 74 4 chr11 119649631 119649896 -31133657 + AluJb SINE Alu 37 317 0 1924 123 7 0 chr11 119650190 119650459 -31133094 - AluSx SINE Alu -41 271 1 2361 88 0 0 chr11 119650488 119650782 -31132771 + AluY SINE Alu 1 294 -17 2128 114 17 3 chr11 119651887 119652185 -31131368 + AluY SINE Alu 1 302 -9 269 264 48 24 chr11 119652237 119652362 -31131191 - AluSp/q SINE Alu 0 303 176 2245 83 0 10 chr11 119652480 119652770 -31130783 - AluSq SINE Alu 0 313 27 1951 148 0 0 chr11 119652876 119653166 -31130387 - AluJo SINE Alu -22 290 1 2112 85 0 51 chr11 119655012 119655332 -31128221 - AluY SINE Alu 0 305 1 2210 109 3 6 chr11 119655350 119655662 -31127891 - AluY SINE Alu 0 311 1 230 288 17 0 chr11 119656127 119656186 -31127367 - MIR3 SINE MIR -24 184 125 1983 125 14 4 chr11 119656349 119656659 -31126894 + AluSx SINE Alu 1 313 0 2075 127 3 0 chr11 119657096 119657426 -31126127 + AluSx SINE Alu 1 331 0 23 33 0 0 chr11 119659044 119659074 -31124479 + AT_rich Low_complexity Low_complexity 1 30 0 2040 127 0 7 chr11 119659074 119659365 -31124188 - AluSx SINE Alu -23 289 1 207 305 19 104 chr11 119659410 119659564 -31123989 - MIR SINE MIR -49 213 73 212 265 59 78 chr11 119659618 119659720 -31123833 - MIR SINE MIR -56 206 107 196 265 103 0 chr11 119659959 119660027 -31123526 - MIR SINE MIR -115 93 19 2301 95 20 0 chr11 119661701 119662005 -31121548 + AluSg SINE Alu 1 310 0 374 370 7 13 chr11 119662163 119662317 -31121236 + L2 LINE L2 2538 2690 -624 215 345 100 40 chr11 119662540 119662740 -31120813 + L2 LINE L2 2940 3151 -121 2059 141 0 0 chr11 119662893 119663198 -31120355 - AluSx SINE Alu 0 305 1 1107 139 124 40 chr11 119663259 119663460 -31120093 - MER20 DNA MER1_type -1 218 1 1981 100 41 0 chr11 119663716 119664018 -31119535 + AluSg SINE Alu 1 313 0 676 171 23 47 chr11 119664579 119664708 -31118845 + FLAM_A SINE Alu 5 130 -3 2120 117 0 0 chr11 119664866 119665187 -31118366 - AluSx SINE Alu 0 321 1 3309 98 8 108 chr11 119666010 119666609 -31116944 + MER4B LTR ERV1 1 539 -71 397 274 24 16 chr11 119666624 119666748 -31116805 + L1MEc LINE L1 172 296 -6100 373 58 39 0 chr11 119666748 119666800 -31116753 + MER4E LTR ERV1 719 772 -7 2202 88 0 80 chr11 119666802 119667141 -31116412 - AluSx SINE Alu 0 312 1 1373 246 10 48 chr11 119667169 119667242 -31116311 + L1MEc LINE L1 60 134 -6262 2314 115 0 3 chr11 119667242 119667554 -31115999 - AluSx SINE Alu -1 311 1 1373 246 10 48 chr11 119667554 119667878 -31115675 + L1MEc LINE L1 134 442 -5954 1214 165 5 0 chr11 119668103 119668303 -31115250 + L1MEc LINE L1 545 745 -5651 * 1731 261 77 42 chr11 119668280 119668869 -31114684 + L1MEc LINE L1 1018 1585 -4811 1463 155 0 136 chr11 119668869 119669105 -31114448 + AluJo SINE Alu 1 267 -45 1839 155 26 10 chr11 119669105 119669408 -31114145 - AluJb SINE Alu -4 308 1 1463 155 0 136 chr11 119669408 119669437 -31114116 + AluJo SINE Alu 267 208 -104 2146 106 0 10 chr11 119669437 119669730 -31113823 - AluSx SINE Alu -22 290 1 1463 155 0 136 chr11 119669730 119669824 -31113729 + AluJo SINE Alu 207 312 0 1731 261 77 42 chr11 119669824 119670039 -31113514 + L1MEc LINE L1 1585 1850 -4546 183 264 40 112 chr11 119670532 119670576 -31112977 + L2 LINE L2 3197 3243 -70 1645 137 6 105 chr11 119670576 119670919 -31112634 - AluJo SINE Alu -3 309 1 183 264 40 112 chr11 119670919 119670999 -31112554 + L2 LINE L2 3243 3312 -1 373 263 91 108 chr11 119671059 119671309 -31112244 - L3b LINE CR1 -68 1515 1269 288 53 0 0 chr11 119671309 119671347 -31112206 + (CA)n Simple_repeat Simple_repeat 1 38 0 373 263 91 108 chr11 119671347 119671393 -31112160 - L3b LINE CR1 -314 1269 1224 25 31 0 0 chr11 119671706 119671738 -31111815 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr11 119672272 119672294 -31111259 + AT_rich Low_complexity Low_complexity 1 22 0 181 313 47 0 chr11 119672379 119672443 -31111110 + MIR3 SINE MIR 130 196 -12 2409 87 0 0 chr11 119672757 119673057 -31110496 + AluSg SINE Alu 4 303 -7 2854 228 117 85 chr11 119673337 119673495 -31110058 - L1MD1 LINE L1 -260 5982 5831 1832 139 0 37 chr11 119673495 119673819 -31109734 + AluSx SINE Alu 1 313 0 2854 228 117 85 chr11 119673819 119674106 -31109447 - L1MD1 LINE L1 -411 5831 5555 1958 182 25 6 chr11 119674106 119674464 -31109089 - MLT1A1 LTR MaLR 0 365 1 2854 228 117 85 chr11 119674464 119675254 -31108299 - L1MD1 LINE L1 -687 5555 4792 1920 162 0 7 chr11 119675254 119675551 -31108002 - AluSx SINE Alu -17 295 1 2854 228 117 85 chr11 119675551 119676059 -31107494 - L1MD1 LINE L1 -1450 4792 4302 897 123 0 27 chr11 119676059 119676205 -31107348 - FLAM_C SINE Alu -1 142 1 2854 228 117 85 chr11 119676205 119676346 -31107207 - L1MD1 LINE L1 -1940 4302 4167 2312 84 34 0 chr11 119676346 119676643 -31106910 - AluY SINE Alu -3 308 2 2854 228 117 85 chr11 119676643 119676692 -31106861 - L1MD1 LINE L1 -2075 4167 4121 1801 193 121 35 chr11 119676692 119677122 -31106431 + MLT1C LTR MaLR 1 467 0 2854 228 117 85 chr11 119677122 119677263 -31106290 - L1MD1 LINE L1 -2121 4121 3986 2029 130 3 10 chr11 119677263 119677563 -31105990 - AluJb SINE Alu -14 298 1 2854 228 117 85 chr11 119677563 119678207 -31105346 - L1MD1 LINE L1 -2256 3986 3015 6576 135 11 8 chr11 119678223 119678399 -31105154 - L1MA5A LINE L1 0 6297 6123 180 111 0 0 chr11 119678399 119678426 -31105127 + (TA)n Simple_repeat Simple_repeat 2 28 0 1893 160 10 0 chr11 119678426 119678720 -31104833 - AluJb SINE Alu -15 297 1 6576 135 11 8 chr11 119678720 119679796 -31103757 - L1MA5A LINE L1 -173 6124 5039 279 390 61 13 chr11 119679883 119680196 -31103357 - L1MDa LINE L1 -6210 330 3 9714 146 39 16 chr11 119680207 119682022 -31101531 + L1MA4 LINE L1 3622 5520 -780 2269 81 3 0 chr11 119682022 119682351 -31101202 + AluSq SINE Alu 1 330 0 9714 146 39 16 chr11 119682351 119683145 -31100408 + L1MA4 LINE L1 5520 6294 -6 3281 155 68 2 chr11 119683184 119683740 -31099813 - L1MB5 LINE L1 -8 6166 5574 24 0 0 0 chr11 119683751 119683775 -31099778 + AT_rich Low_complexity Low_complexity 1 24 0 1997 119 43 0 chr11 119683775 119684053 -31099500 - AluSx SINE Alu -22 290 1 554 279 72 62 chr11 119684163 119684665 -31098888 - L1MC/D LINE L1 -1993 5815 5309 379 269 42 120 chr11 119684823 119685106 -31098447 - MLT1L LTR MaLR -234 381 121 1280 175 11 82 chr11 119685351 119685534 -31098019 - AluJo SINE Alu -14 298 137 2230 79 0 28 chr11 119685534 119685848 -31097705 + AluY SINE Alu 1 306 0 1280 175 11 82 chr11 119685848 119685932 -31097621 - AluJo SINE Alu -175 137 49 21 0 0 0 chr11 119686053 119686074 -31097479 + AT_rich Low_complexity Low_complexity 1 21 0 228 86 0 0 chr11 119686482 119686517 -31097036 + (CTTG)n Simple_repeat Simple_repeat 2 36 0 715 165 0 41 chr11 119686520 119686791 -31096762 - FLAM_C SINE Alu 0 280 15 2289 101 0 3 chr11 119686879 119687175 -31096378 + AluSq SINE Alu 1 295 -18 2206 56 46 7 chr11 119687675 119687959 -31095594 - AluY SINE Alu -16 295 1 1616 180 7 14 chr11 119688904 119689182 -31094371 + AluJo SINE Alu 12 287 -25 2222 125 0 0 chr11 119689184 119689480 -31094073 + AluSx SINE Alu 1 296 -16 50 0 0 0 chr11 119689480 119689530 -31094023 + AT_rich Low_complexity Low_complexity 1 50 0 2200 119 0 3 chr11 119690116 119690426 -31093127 + AluSg SINE Alu 1 309 -1 341 311 93 22 chr11 119690455 119690638 -31092915 - L2 LINE L2 -161 3111 2916 181 319 138 7 chr11 119690890 119691028 -31092525 - L2 LINE L2 -719 2595 2440 806 188 0 0 chr11 119693040 119693183 -31090370 - FLAM_C SINE Alu 0 144 2 209 245 0 0 chr11 119694006 119694055 -31089498 - MIR SINE MIR -123 139 91 861 270 87 39 chr11 119694493 119694549 -31089004 + L1ME LINE L1 5308 5360 -761 2318 99 0 7 chr11 119694549 119694852 -31088701 + AluSx SINE Alu 1 301 -11 861 270 87 39 chr11 119694852 119695267 -31088286 + L1ME LINE L1 5360 5797 -324 2139 116 7 26 chr11 119695448 119695758 -31087795 - AluSx SINE Alu -8 304 1 881 133 0 28 chr11 119696933 119697076 -31086477 - FLAM_C SINE Alu -4 139 1 1814 146 6 53 chr11 119697123 119697445 -31086108 - AluSx SINE Alu -5 307 1 192 97 0 0 chr11 119697471 119697502 -31086051 + (A)n Simple_repeat Simple_repeat 1 31 0 288 0 0 0 chr11 119698378 119698410 -31085143 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 200 247 0 118 chr11 119700523 119700616 -31082937 - L2 LINE L2 -1 3271 3190 426 321 49 5 chr11 119700751 119700939 -31082614 + MIR SINE MIR 35 231 -31 765 206 8 0 chr11 119701374 119701505 -31082048 + FLAM_A SINE Alu 1 132 -1 2138 139 0 0 chr11 119701519 119701822 -31081731 + AluSx SINE Alu 1 303 -9 342 283 33 0 chr11 119701825 119701917 -31081636 - MIR3 SINE MIR -29 179 85 1539 133 0 17 chr11 119702114 119702355 -31081198 + AluSq SINE Alu 1 237 -76 283 143 0 20 chr11 119702499 119702574 -31080979 + AluSq SINE Alu 246 301 0 1036 239 83 45 chr11 119702603 119702968 -31080585 - L2 LINE L2 -224 3089 2739 1719 150 146 53 chr11 119702968 119702988 -31080565 + LTR54B LTR ERV1 1 18 -480 2049 114 7 10 chr11 119702988 119703312 -31080241 + AluSx SINE Alu 1 312 0 1719 150 146 53 chr11 119703312 119703744 -31079809 + LTR54B LTR ERV1 18 495 -3 1036 239 83 45 chr11 119703744 119703817 -31079736 - L2 LINE L2 -574 2739 2670 2533 120 11 16 chr11 119703817 119704193 -31079360 - THE1C LTR MaLR -1 374 1 1036 239 83 45 chr11 119704193 119704258 -31079295 - L2 LINE L2 -643 2670 2562 572 242 0 8 chr11 119704263 119704387 -31079166 + L2 LINE L2 3191 3313 0 1880 137 0 11 chr11 119704835 119705120 -31078433 - AluSx SINE Alu -30 282 1 515 233 70 0 chr11 119705247 119705376 -31078177 - MIR SINE MIR -21 241 104 2117 107 31 3 chr11 119705406 119705697 -31077856 + AluSx SINE Alu 1 299 -13 3656 222 10 20 chr11 119705702 119706535 -31077018 + L1M1 LINE L1 2318 3141 -3005 650 157 19 19 chr11 119706537 119706645 -31076908 + FRAM SINE Alu 58 165 -11 9359 155 10 24 chr11 119706645 119706739 -31076814 + L1M1 LINE L1 3696 3790 -2510 1866 179 0 0 chr11 119706739 119707041 -31076512 + AluJb SINE Alu 1 302 -10 9359 155 10 24 chr11 119707041 119707730 -31075823 + L1M1 LINE L1 3790 4488 -1812 2123 112 22 22 chr11 119707730 119708042 -31075511 + AluSx SINE Alu 1 312 0 9359 155 10 24 chr11 119708042 119709375 -31074178 + L1M1 LINE L1 4488 5786 -514 2912 94 3 0 chr11 119709375 119709749 -31073804 - MER57B LTR ERV1 -59 375 1 352 240 237 10 chr11 119709950 119710137 -31073416 + MIR SINE MIR 27 262 0 1794 141 29 4 chr11 119710602 119710912 -31072641 + AluJo SINE Alu 1 317 0 229 395 18 9 chr11 119711073 119711187 -31072366 + MER5B DNA MER1_type 61 175 -3 206 306 0 0 chr11 119711271 119711343 -31072210 + (TAAA)n Simple_repeat Simple_repeat 2 73 0 2159 127 3 0 chr11 119711907 119712214 -31071339 + AluSx SINE Alu 1 308 -4 411 338 90 40 chr11 119712231 119712554 -31070999 + HAL1b LINE L1 268 606 -742 44557 41 5 4 chr11 119713367 119717393 -31066160 - L1P2 LINE L1 -706 5449 1412 187 31 62 0 chr11 119717393 119717425 -31066128 + (CATTT)n Simple_repeat Simple_repeat 5 38 0 44557 41 5 4 chr11 119717425 119718838 -31064715 - L1P2 LINE L1 -4743 1412 3 27911 82 10 6 chr11 119718839 119722610 -31060943 - L1P LINE L1 -2357 3789 1 964 236 25 158 chr11 119722623 119723220 -31060333 + MLT1G LTR MaLR 73 590 0 343 321 25 15 chr11 119723261 119723457 -31060096 - L1MEc LINE L1 -4341 2055 1858 4956 158 45 8 chr11 119723463 119724442 -31059111 - L1MB4 LINE L1 0 6180 5156 1000 110 7 0 chr11 119724442 119724578 -31058975 - AluSg/x SINE Alu -19 291 155 2097 145 0 0 chr11 119724736 119725046 -31058507 - AluJo SINE Alu -2 310 1 20346 93 9 14 chr11 119725046 119728001 -31055552 - L1P LINE L1 -750 5711 2773 9086 86 134 6 chr11 119728001 119729441 -31054112 - L1P3 LINE L1 -4584 1877 258 341 305 142 0 chr11 119729442 119729583 -31053970 - L1MB4 LINE L1 -1029 5117 4957 2069 104 3 14 chr11 119729586 119729883 -31053670 - AluSc SINE Alu -15 294 1 2155 114 0 0 chr11 119730162 119730475 -31053078 + AluSg SINE Alu 1 313 0 2345 74 0 0 chr11 119731793 119732100 -31051453 + AluSx SINE Alu 6 312 0 2101 120 0 63 chr11 119732955 119733289 -31050264 + AluSq SINE Alu 1 313 0 2139 101 3 38 chr11 119733293 119733609 -31049944 + AluSx SINE Alu 1 305 -7 27 81 0 0 chr11 119740049 119740111 -31043442 + AT_rich Low_complexity Low_complexity 1 62 0 924 228 87 0 chr11 119740622 119740841 -31042712 - MIR SINE MIR -21 241 4 2707 35 0 6 chr11 119740870 119741183 -31042370 + AluY SINE Alu 1 311 0 1359 104 49 0 chr11 119742854 119743037 -31040516 - AluSg/x SINE Alu -18 292 101 4033 89 22 14 chr11 119743789 119744339 -31039214 + MER41A LTR ERV1 1 554 0 333 118 342 0 chr11 119744339 119744415 -31039138 + MER41A-int LTR ERV1 1 102 -7654 2144 136 0 3 chr11 119744604 119744914 -31038639 + AluSx SINE Alu 1 309 -3 1420 98 0 5 chr11 119744924 119745117 -31038436 + AluSg/x SINE Alu 116 307 -3 2050 139 30 35 chr11 119745174 119745512 -31038041 + MER1B DNA MER1_type 2 337 0 1999 121 7 7 chr11 119745673 119746008 -31037545 - AluSx SINE Alu 0 312 1 21 0 0 0 chr11 119747329 119747350 -31036203 + AT_rich Low_complexity Low_complexity 1 21 0 518 276 87 25 chr11 119747485 119747681 -31035872 - MIR SINE MIR -32 230 23 1816 159 24 7 chr11 119748025 119748315 -31035238 - AluJo SINE Alu -17 295 1 314 337 51 28 chr11 119748379 119748557 -31034996 - MIR SINE MIR -70 192 11 1800 176 3 3 chr11 119748730 119749025 -31034528 + AluSx SINE Alu 1 295 -17 327 258 157 0 chr11 119749116 119749205 -31034348 + MIR SINE MIR 2 104 -158 843 255 46 63 chr11 119749276 119749515 -31034038 + MIR SINE MIR 2 236 -26 2383 125 36 25 chr11 119750037 119750397 -31033156 + THE1B LTR MaLR 1 364 0 338 118 355 26 chr11 119750547 119750623 -31032930 + MER20 DNA MER1_type 119 219 0 214 151 38 38 chr11 119750623 119750676 -31032877 + MIR3 SINE MIR 153 205 -3 1942 156 0 25 chr11 119751043 119751363 -31032190 - AluJo SINE Alu 0 312 1 619 256 26 31 chr11 119751860 119752051 -31031502 + MIR SINE MIR 31 220 -42 2061 138 0 0 chr11 119752182 119752472 -31031081 + AluSx SINE Alu 5 294 -18 288 130 0 0 chr11 119752526 119752572 -31030981 + (GA)n Simple_repeat Simple_repeat 2 47 0 508 288 151 10 chr11 119753605 119753810 -31029743 - MIR SINE MIR -1 261 28 2419 88 0 3 chr11 119753836 119754143 -31029410 - AluSq SINE Alu -7 306 1 865 216 0 6 chr11 119754475 119754646 -31028907 - AluJb SINE Alu -14 298 129 401 322 125 14 chr11 119754771 119754979 -31028574 + L2 LINE L2 2612 2842 -472 846 155 0 0 chr11 119755008 119755137 -31028416 - FLAM_C SINE Alu -8 135 7 380 292 39 15 chr11 119755371 119755501 -31028052 + L2 LINE L2 2924 3056 -216 382 296 89 84 chr11 119755692 119755838 -31027715 + L2 LINE L2 2378 2522 -792 2269 96 0 3 chr11 119755838 119756131 -31027422 - AluSg SINE Alu -18 292 1 382 296 89 84 chr11 119756131 119756287 -31027266 + L2 LINE L2 2522 2685 -629 1018 186 71 48 chr11 119756287 119756428 -31027125 - MER20 DNA MER1_type -4 215 66 1769 182 14 0 chr11 119756428 119756719 -31026834 - AluJb SINE Alu -17 295 1 1018 186 71 48 chr11 119756719 119756787 -31026766 - MER20 DNA MER1_type -153 66 1 382 296 89 84 chr11 119756787 119756854 -31026699 + L2 LINE L2 2685 2750 -564 219 371 109 22 chr11 119757063 119757292 -31026261 + L2 LINE L2 2826 3074 -198 622 301 13 0 chr11 119757387 119757543 -31026010 - MER91B DNA MER1_type -10 180 23 367 315 79 8 chr11 119757559 119757686 -31025867 + L2 LINE L2 3177 3312 -1 184 364 92 17 chr11 119757765 119757938 -31025615 - MER5A DNA MER1_type 0 189 4 1812 144 45 3 chr11 119758900 119759191 -31024362 - AluJb SINE Alu -9 303 1 21 57 0 0 chr11 119760077 119760112 -31023441 + AT_rich Low_complexity Low_complexity 1 35 0 1258 190 0 25 chr11 119762336 119762578 -31020975 + MER46A DNA MER2_type 1 236 0 2268 101 0 22 chr11 119762662 119762980 -31020573 + AluSx SINE Alu 1 311 -1 236 296 25 0 chr11 119763394 119763475 -31020078 + CT-rich Low_complexity Low_complexity 3 85 0 572 242 38 95 chr11 119763490 119763534 -31020019 - MIR SINE MIR -12 250 205 1850 146 14 7 chr11 119763534 119763828 -31019725 - AluJb SINE Alu -16 296 1 572 242 38 95 chr11 119763828 119764047 -31019506 - MIR SINE MIR -57 205 2 919 178 0 0 chr11 119764273 119764425 -31019128 + AluJb SINE Alu 146 297 -15 596 327 97 37 chr11 119764454 119764803 -31018750 - L2 LINE L2 -472 2842 2473 247 231 83 46 chr11 119764870 119764978 -31018575 + MER5A DNA MER1_type 1 112 -77 882 99 99 0 chr11 119765176 119765297 -31018256 - AluSq/x SINE Alu -180 133 1 1777 189 10 0 chr11 119766746 119767042 -31016511 - AluSq SINE Alu -14 299 1 397 235 0 0 chr11 119767042 119767110 -31016443 - MER20 DNA MER1_type -151 68 1 220 344 0 0 chr11 119767116 119767177 -31016376 + L2 LINE L2 2690 2750 -564 219 371 109 22 chr11 119767386 119767615 -31015938 + L2 LINE L2 2826 3074 -198 622 301 13 0 chr11 119767710 119767866 -31015687 - MER91B DNA MER1_type -10 180 23 367 315 79 8 chr11 119767882 119768009 -31015544 + L2 LINE L2 3177 3312 -1 184 364 92 17 chr11 119768088 119768261 -31015292 - MER5A DNA MER1_type 0 189 4 1821 144 45 3 chr11 119769223 119769515 -31014038 - AluJb SINE Alu -8 304 1 21 57 0 0 chr11 119770401 119770436 -31013117 + AT_rich Low_complexity Low_complexity 1 35 0 1262 190 0 25 chr11 119772660 119772902 -31010651 + MER46A DNA MER2_type 1 236 0 2262 101 0 22 chr11 119772986 119773304 -31010249 + AluSx SINE Alu 1 311 -1 236 296 25 0 chr11 119773718 119773799 -31009754 + CT-rich Low_complexity Low_complexity 3 85 0 593 239 38 95 chr11 119773814 119773858 -31009695 - MIR SINE MIR -12 250 205 1859 146 14 7 chr11 119773858 119774153 -31009400 - AluJb SINE Alu -15 297 1 593 239 38 95 chr11 119774153 119774372 -31009181 - MIR SINE MIR -57 205 2 1895 140 3 10 chr11 119774838 119775131 -31008422 - AluJb SINE Alu -21 291 1 2151 112 0 0 chr11 119775682 119775969 -31007584 - AluSx SINE Alu -24 288 2 1442 188 76 10 chr11 119777131 119777419 -31006134 - AluJo SINE Alu -5 307 1 215 174 22 0 chr11 119777846 119777892 -31005661 + T-rich Low_complexity Low_complexity 4 50 0 1258 159 0 0 chr11 119778083 119778272 -31005281 + AluJo SINE Alu 1 189 -123 380 288 119 0 chr11 119778282 119778400 -31005153 - L2 LINE L2 -8 3264 3133 239 193 175 0 chr11 119778475 119778532 -31005021 - L2 LINE L2 -61 3252 3186 1765 179 3 0 chr11 119778573 119778864 -31004689 + AluJo SINE Alu 1 292 -20 483 255 154 67 chr11 119778922 119779502 -31004051 - L2 LINE L2 -260 3053 2426 228 256 55 117 chr11 119779631 119779764 -31003789 - L1MC/D LINE L1 -2002 5806 5666 1842 120 64 0 chr11 119779764 119780047 -31003506 - AluSg SINE Alu -9 301 1 228 256 55 117 chr11 119780047 119780144 -31003409 - L1MC/D LINE L1 -2142 5666 5597 1920 126 0 66 chr11 119780144 119780461 -31003092 - AluJo SINE Alu -16 296 1 228 256 55 117 chr11 119780461 119780537 -31003016 - L1MC/D LINE L1 -2211 5597 5518 2179 100 3 10 chr11 119780774 119781073 -31002480 + AluSx SINE Alu 1 297 -15 611 196 101 14 chr11 119781111 119781259 -31002294 + MIR SINE MIR 102 262 0 402 227 64 0 chr11 119781414 119781524 -31002029 - L2 LINE L2 -8 3305 3189 2156 118 0 10 chr11 119781917 119782223 -31001330 - AluSx SINE Alu -9 303 1 1365 167 35 35 chr11 119782236 119782493 -31001060 - AluJb SINE Alu -45 267 11 1007 222 80 89 chr11 119784286 119784318 -30999235 - MLT1H LTR MaLR -8 616 585 2152 130 0 0 chr11 119784318 119784640 -30998913 - AluSx SINE Alu 0 312 1 1007 222 80 89 chr11 119784640 119785038 -30998515 - MLT1H LTR MaLR -39 585 106 262 200 100 55 chr11 119785212 119785322 -30998231 - MLT1H LTR MaLR -430 119 5 249 313 25 0 chr11 119785329 119785409 -30998144 - MIR SINE MIR -113 149 68 2341 102 3 0 chr11 119787000 119787305 -30996248 - AluSx SINE Alu -6 306 1 2141 100 0 4 chr11 119788060 119788385 -30995168 - AluSg1 SINE Alu 0 324 1 21 0 0 0 chr11 119788389 119788410 -30995143 + AT_rich Low_complexity Low_complexity 1 21 0 1213 170 125 56 chr11 119789169 119789457 -30994096 - AluJb SINE Alu -4 308 1 1484 160 19 23 chr11 119789747 119790009 -30993544 + AluSx SINE Alu 1 261 -51 361 338 27 14 chr11 119790319 119790467 -30993086 + MIR SINE MIR 2 151 -111 1413 206 47 32 chr11 119790467 119790724 -30992829 - HsTC2a DNA Tc2 -1154 744 477 1813 113 0 4 chr11 119790724 119790971 -30992582 - AluSx SINE Alu -13 299 54 1413 206 47 32 chr11 119790971 119791121 -30992432 - HsTC2a DNA Tc2 -1421 477 331 464 304 56 6 chr11 119791141 119791302 -30992251 - HsTC2a DNA Tc2 -571 173 5 1273 35 0 0 chr11 119791373 119791514 -30992039 + AluY SINE Alu 156 296 -15 1536 143 34 71 chr11 119792112 119792406 -30991147 + AluJb SINE Alu 5 287 -25 30 0 0 0 chr11 119792408 119792438 -30991115 + AT_rich Low_complexity Low_complexity 1 30 0 3932 166 31 6 chr11 119792538 119793175 -30990378 + Tigger7 DNA MER2_type 1 653 -1834 257 277 109 25 chr11 119793379 119793498 -30990055 + MER91A DNA MER1_type 20 148 -48 537 232 125 36 chr11 119794110 119794278 -30989275 + MIR SINE MIR 2 184 -78 247 267 78 78 chr11 119794407 119794523 -30989030 - L2 LINE L2 -15 3257 3142 303 346 123 0 chr11 119794793 119794972 -30988581 - MIR SINE MIR -30 232 32 190 382 52 15 chr11 119794999 119795135 -30988418 - L2 LINE L2 -515 2799 2659 759 223 83 0 chr11 119795137 119795330 -30988223 + MER58A DNA MER1_type 16 224 0 276 310 123 27 chr11 119795344 119795531 -30988022 - L2 LINE L2 -692 2622 2418 1801 182 115 54 chr11 119795535 119795945 -30987608 + MLT1D LTR MaLR 1 444 -61 1787 100 0 8 chr11 119795945 119796185 -30987368 - AluSq SINE Alu -12 301 64 1801 182 115 54 chr11 119796185 119796236 -30987317 + MLT1D LTR MaLR 444 490 -15 400 317 18 30 chr11 119796584 119796751 -30986802 + MIR SINE MIR 2 166 -96 2203 108 7 0 chr11 119798003 119798299 -30985254 + AluSx SINE Alu 1 298 -14 3128 149 65 9 chr11 119798672 119799227 -30984326 + L1MB3 LINE L1 5588 6173 -10 321 297 51 14 chr11 119799246 119799384 -30984169 + HAL1 LINE L1 557 699 -1808 1669 166 7 10 chr11 119799395 119799691 -30983862 + AluJo SINE Alu 1 295 -17 237 65 0 0 chr11 119800029 119800060 -30983493 + LTR33A LTR ERVL 490 520 -3 2289 101 0 3 chr11 119800192 119800488 -30983065 - AluSq SINE Alu -18 295 1 716 165 0 41 chr11 119800576 119800851 -30982702 + FLAM_C SINE Alu 15 284 0 21 0 0 0 chr11 119801297 119801318 -30982235 + AT_rich Low_complexity Low_complexity 1 21 0 1261 173 11 85 chr11 119801439 119801524 -30982029 + AluJo SINE Alu 49 139 -173 2229 79 0 28 chr11 119801524 119801838 -30981715 - AluY SINE Alu 0 306 1 1261 173 11 85 chr11 119801838 119802023 -30981530 + AluJo SINE Alu 139 300 -12 370 269 42 120 chr11 119802268 119802551 -30981002 + MLT1L LTR MaLR 121 381 -234 537 278 74 60 chr11 119802709 119803209 -30980344 + L1MC/D LINE L1 5309 5815 -1993 1997 119 43 0 chr11 119803319 119803597 -30979956 + AluSx SINE Alu 1 290 -22 24 0 0 0 chr11 119803597 119803621 -30979932 + AT_rich Low_complexity Low_complexity 1 24 0 2439 153 74 2 chr11 119803632 119804050 -30979503 + L1MB5 LINE L1 5574 6021 -153 472 181 0 53 chr11 119804150 119804321 -30979232 + C-rich Low_complexity Low_complexity 2 163 0 1114 61 0 0 chr11 119804768 119804900 -30978653 - L1PA3 LINE L1 0 6155 6024 226 259 35 17 chr11 119805117 119805175 -30978378 + L1M3de LINE L1 1099 1157 -5496 210 37 0 0 chr11 119805387 119805414 -30978139 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2182 110 0 0 chr11 119805416 119805698 -30977855 - AluSq SINE Alu -31 282 1 362 295 11 0 chr11 119805867 119805962 -30977591 + MLT1J LTR MaLR 4 99 -412 205 368 0 0 chr11 119806020 119806088 -30977465 + MIR SINE MIR 50 117 -91 590 275 121 0 chr11 119806133 119806315 -30977238 + MIR SINE MIR 59 262 0 276 261 77 0 chr11 119806815 119806880 -30976673 + L2 LINE L2 3170 3239 -33 521 291 53 7 chr11 119807243 119807394 -30976159 + MIR SINE MIR 29 186 -76 593 273 113 5 chr11 119807430 119807624 -30975929 + MIR SINE MIR 48 262 0 634 278 107 33 chr11 119807717 119808080 -30975473 - L1MC/D LINE L1 -2164 5644 5255 1568 181 20 26 chr11 119808294 119808598 -30974955 - AluJo SINE Alu -10 302 1 183 287 59 40 chr11 119808617 119808718 -30974835 + L2 LINE L2 2304 2406 -908 281 267 22 0 chr11 119811461 119811551 -30972002 + C-rich Low_complexity Low_complexity 3 94 0 207 0 0 0 chr11 119811950 119811973 -30971580 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 255 282 243 0 chr11 119812791 119812894 -30970659 - L2 LINE L2 -9 3263 3136 645 218 58 6 chr11 119813261 119813417 -30970136 + MER106B DNA MER1_type 896 1059 0 2155 84 28 0 chr11 119813565 119813849 -30969704 + AluY SINE Alu 1 292 -19 281 374 137 14 chr11 119813863 119814309 -30969244 - L2 LINE L2 -618 2696 2196 1724 128 4 0 chr11 119814833 119815083 -30968470 - AluSx SINE Alu -2 310 60 321 342 119 25 chr11 119815224 119815502 -30968051 + L1M4 LINE L1 3974 4277 -1869 624 253 130 43 chr11 119815539 119815840 -30967713 - L2 LINE L2 -5 3308 2982 927 325 92 22 chr11 119816001 119816518 -30967035 - L2 LINE L2 -16 3297 2754 342 317 30 0 chr11 119816506 119816607 -30966946 + MIR SINE MIR 19 122 -140 * 192 125 0 0 chr11 119816669 119816701 -30966852 + (GA)n Simple_repeat Simple_repeat 1 32 0 181 328 0 0 chr11 119817254 119817312 -30966241 - L3b LINE CR1 -159 1424 1367 254 206 16 0 chr11 119819321 119819384 -30964169 + CT-rich Low_complexity Low_complexity 2 65 0 1669 192 10 0 chr11 119819386 119819694 -30963859 - AluJb SINE Alu -1 311 1 347 175 0 0 chr11 119819902 119819959 -30963594 - L2 LINE L2 0 3313 3257 820 184 7 7 chr11 119820195 119820347 -30963206 - FRAM SINE Alu -15 161 10 2368 132 19 29 chr11 119820504 119820883 -30962670 + THE1C LTR MaLR 1 375 0 914 152 0 0 chr11 119820886 119821024 -30962529 + L1MB5 LINE L1 6029 6166 -8 676 179 89 0 chr11 119821052 119821164 -30962389 + FLAM_A SINE Alu 2 123 -10 1774 160 24 17 chr11 119821761 119822049 -30961504 + AluJb SINE Alu 1 290 -22 203 357 105 49 chr11 119822246 119822571 -30960982 - L2 LINE L2 -2708 606 264 1174 182 13 40 chr11 119823051 119823276 -30960277 + MER20 DNA MER1_type 1 219 0 260 294 22 33 chr11 119823287 119823379 -30960174 + MIR SINE MIR 32 122 -140 219 379 11 11 chr11 119823511 119823606 -30959947 + L2 LINE L2 2614 2708 -606 981 175 0 30 chr11 119823672 119823838 -30959715 - FRAM SINE Alu -5 161 1 360 273 45 23 chr11 119825447 119825579 -30957974 - MER5A DNA MER1_type -1 188 54 * 483 259 42 21 chr11 119825470 119825613 -30957940 + MER5A DNA MER1_type 34 179 -10 2258 109 0 7 chr11 119825786 119826089 -30957464 - AluSx SINE Alu -11 301 1 737 182 106 0 chr11 119826318 119826472 -30957081 + FRAM SINE Alu 1 168 0 333 189 33 0 chr11 119826516 119826606 -30956947 + GA-rich Low_complexity Low_complexity 2 94 0 675 177 8 169 chr11 119826750 119826999 -30956554 + MER20 DNA MER1_type 3 211 -8 3932 163 31 8 chr11 119827082 119827719 -30955834 - Tigger7 DNA MER2_type -81 652 1 30 0 0 0 chr11 119827819 119827849 -30955704 + AT_rich Low_complexity Low_complexity 1 30 0 1536 143 34 71 chr11 119827851 119828145 -30955408 - AluJb SINE Alu -25 287 5 1282 35 0 0 chr11 119828743 119828885 -30954668 - AluY SINE Alu -14 297 156 464 304 56 6 chr11 119828956 119829117 -30954436 + HsTC2b DNA Tc2 5 173 -742 1429 203 47 32 chr11 119829137 119829287 -30954266 + HsTC2b DNA Tc2 331 477 -1421 1813 113 0 4 chr11 119829287 119829534 -30954019 + AluSx SINE Alu 54 299 -13 1429 203 47 32 chr11 119829534 119829791 -30953762 + HsTC2b DNA Tc2 477 920 2 361 338 27 14 chr11 119829791 119829939 -30953614 - MIR SINE MIR -111 151 2 2286 108 0 0 chr11 119830204 119830501 -30953052 + AluSx SINE Alu 1 297 -15 421 202 62 29 chr11 119830531 119830650 -30952903 - MIR SINE MIR -62 146 38 1956 136 7 13 chr11 119830889 119831197 -30952356 - AluSx SINE Alu -6 306 1 1286 170 130 47 chr11 119831486 119831763 -30951790 + AluJo SINE Alu 1 300 -2 21 0 0 0 chr11 119832534 119832555 -30950998 + AT_rich Low_complexity Low_complexity 1 21 0 2142 100 0 4 chr11 119832559 119832884 -30950669 + AluSg1 SINE Alu 1 324 0 2387 66 0 7 chr11 119833270 119833572 -30949981 - AluY SINE Alu -11 300 1 1701 164 23 10 chr11 119833601 119833905 -30949648 + AluJb SINE Alu 1 308 -4 2160 117 0 0 chr11 119833907 119834207 -30949346 + AluSx SINE Alu 1 300 -12 687 109 0 167 chr11 119834865 119835039 -30948514 + FRAM SINE Alu 1 140 -36 977 255 8 0 chr11 119836887 119837122 -30946431 + MER8 DNA MER2_type 3 239 0 21 0 0 0 chr11 119837451 119837472 -30946081 + AT_rich Low_complexity Low_complexity 1 21 0 331 283 20 0 chr11 119837567 119837666 -30945887 - MIR SINE MIR -90 172 72 2609 139 7 34 chr11 119837790 119838236 -30945317 + MER57B LTR ERV1 1 434 0 462 248 173 59 chr11 119839403 119839638 -30943915 + L1MEd LINE L1 363 570 -5549 2000 153 0 13 chr11 119839638 119839951 -30943602 + AluSx SINE Alu 1 309 -3 2027 132 30 27 chr11 119839951 119840321 -30943232 - THE1C LTR MaLR 0 375 5 210 71 0 0 chr11 119840321 119840349 -30943204 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 462 248 173 59 chr11 119840349 119840555 -30942998 + L1MEd LINE L1 569 857 -5262 34 24 0 0 chr11 119840582 119840623 -30942930 + AT_rich Low_complexity Low_complexity 1 41 0 729 236 8 25 chr11 119840639 119840880 -30942673 + L1MEd LINE L1 988 1224 -4895 255 254 71 72 chr11 119840967 119841191 -30942362 + L1MEc LINE L1 1488 1710 -797 865 138 43 14 chr11 119841321 119841459 -30942094 - FLAM_C SINE Alu -1 142 1 962 292 66 25 chr11 119842750 119843264 -30940289 + HAL1 LINE L1 1 535 -1972 953 204 0 0 chr11 119843275 119843451 -30940102 + FRAM SINE Alu 1 176 0 1567 242 61 97 chr11 119843465 119843667 -30939886 + HAL1 LINE L1 538 746 -1761 942 227 23 19 chr11 119843667 119843883 -30939670 + MER20 DNA MER1_type 3 219 0 1567 242 61 97 chr11 119843883 119844026 -30939527 + HAL1 LINE L1 746 893 -1614 2437 45 3 0 chr11 119844026 119844318 -30939235 - AluYa5 SINE Alu -18 293 1 2138 95 58 10 chr11 119844323 119844617 -30938936 - AluSx SINE Alu -4 308 1 1567 242 61 97 chr11 119844617 119844864 -30938689 + HAL1 LINE L1 897 1151 -1356 1532 190 3 24 chr11 119844864 119845159 -30938394 + AluJo SINE Alu 1 289 -23 1567 242 61 97 chr11 119845159 119845719 -30937834 + HAL1 LINE L1 1151 1656 -851 983 162 0 0 chr11 119845821 119845963 -30937590 - AluJ SINE Alu -24 288 147 5294 176 228 29 chr11 119845963 119847426 -30936127 - MER52A LTR ERV1 0 1755 3 775 184 41 7 chr11 119847426 119847573 -30935980 - AluJ SINE Alu -160 152 1 497 298 101 17 chr11 119847573 119848039 -30935514 + L1MEd LINE L1 1227 1731 -4579 316 267 44 106 chr11 119848108 119848381 -30935172 + L1MEd LINE L1 1698 1953 -4176 458 237 40 0 chr11 119848395 119848547 -30935006 + L1MEd LINE L1 2116 2273 -3856 559 267 81 49 chr11 119848632 119849350 -30934203 - L1MEd LINE L1 -2940 3189 2449 273 283 84 24 chr11 119849494 119849660 -30933893 - L1MEd LINE L1 -5933 186 11 281 94 0 47 chr11 119850277 119850341 -30933212 + (T)n Simple_repeat Simple_repeat 1 61 0 397 361 119 28 chr11 119850827 119851154 -30932399 + L2 LINE L2 2897 3253 -19 2289 69 0 10 chr11 119851176 119851467 -30932086 + AluY SINE Alu 9 296 -15 2025 121 3 51 chr11 119851477 119851790 -30931763 + AluJb SINE Alu 1 298 -14 1359 225 6 19 chr11 119853864 119854175 -30929378 + AluJo SINE Alu 1 307 -5 488 306 148 21 chr11 119854838 119855349 -30928204 - L2 LINE L2 -37 3276 2695 2073 170 25 53 chr11 119855357 119855870 -30927683 + L1MB8 LINE L1 5638 6136 -42 353 168 74 42 chr11 119856111 119856206 -30927347 - MER103 DNA DNA -6 160 63 667 212 15 15 chr11 119856741 119856878 -30926675 - L2 LINE L2 -5 3308 3172 1343 159 10 0 chr11 119856918 119857126 -30926427 - AluJo SINE Alu -16 296 87 2444 261 32 52 chr11 119857128 119857991 -30925562 - L2 LINE L2 -276 3037 2171 2717 139 89 64 chr11 119857991 119858428 -30925125 + LTR29 LTR ERV1 2 460 -162 2482 102 20 50 chr11 119858428 119858887 -30924666 - LTR56 LTR ERV1 0 445 1 2717 139 89 64 chr11 119858887 119859055 -30924498 + LTR29 LTR ERV1 460 622 0 812 241 157 36 chr11 119859055 119859412 -30924141 - L2 LINE L2 -1152 2162 1763 3982 149 52 53 chr11 119859413 119859717 -30923836 + MER4D LTR ERV1 1 304 -599 2053 133 0 19 chr11 119859717 119860032 -30923521 + AluSx SINE Alu 1 309 -3 3982 149 52 53 chr11 119860032 119860621 -30922932 + MER4D LTR ERV1 304 893 -10 1799 188 3 0 chr11 119860706 119861015 -30922538 + AluJb SINE Alu 2 311 -1 385 286 0 40 chr11 119861023 119861149 -30922404 - L2 LINE L2 -1691 1623 1503 1874 162 3 0 chr11 119861266 119861550 -30922003 - AluSx SINE Alu -23 289 5 438 226 0 28 chr11 119861710 119861816 -30921737 - MER94 DNA DNA -6 128 26 3007 110 16 31 chr11 119862057 119862547 -30921006 - LTR26B LTR ERV1 -46 485 3 1160 117 7 211 chr11 119862625 119862693 -30920860 - L1MB8 LINE L1 0 6178 6098 1870 177 3 0 chr11 119862693 119863003 -30920550 + AluJb SINE Alu 1 311 -1 1160 117 7 211 chr11 119863003 119863337 -30920216 - L1MB8 LINE L1 -80 6098 5858 1924 167 0 10 chr11 119864069 119864357 -30919196 + AluJo SINE Alu 1 287 -25 294 29 0 0 chr11 119864357 119864392 -30919161 + (CCAA)n Simple_repeat Simple_repeat 2 36 0 1924 167 0 10 chr11 119864392 119864403 -30919150 + AluJo SINE Alu 287 297 -15 10693 187 54 19 chr11 119865035 119867909 -30915644 + L1M1 LINE L1 16 3751 -3814 2000 149 7 10 chr11 119867909 119868210 -30915343 + AluJo SINE Alu 1 300 -12 10693 187 54 19 chr11 119868210 119869050 -30914503 + L1M1 LINE L1 3751 4560 -3005 610 156 18 18 chr11 119869052 119869161 -30914392 + FRAM SINE Alu 58 166 -10 8527 155 10 24 chr11 119869161 119869255 -30914298 + L1M1 LINE L1 5115 5209 -2510 1889 179 0 0 chr11 119869255 119869557 -30913996 + AluJb SINE Alu 1 302 -10 8527 155 10 24 chr11 119869557 119870246 -30913307 + L1M1 LINE L1 5209 5907 -1812 2128 112 22 22 chr11 119870246 119870558 -30912995 + AluSx SINE Alu 1 312 0 8527 155 10 24 chr11 119870558 119871899 -30911654 + L1M1 LINE L1 5907 7213 -506 2680 86 3 0 chr11 119871902 119872264 -30911289 - MER57B LTR ERV1 -71 363 1 361 240 237 10 chr11 119872465 119872652 -30910901 + MIR SINE MIR 27 262 0 1794 141 29 4 chr11 119873117 119873427 -30910126 + AluJo SINE Alu 1 317 0 244 395 18 9 chr11 119873588 119873702 -30909851 + MER5B DNA MER1_type 61 175 -3 181 313 104 10 chr11 119873707 119873803 -30909750 + L2 LINE L2 3191 3295 -18 2163 127 3 0 chr11 119874422 119874729 -30908824 + AluSx SINE Alu 1 308 -4 520 353 77 28 chr11 119874746 119875069 -30908484 + HAL1b LINE L1 268 606 -742 1703 183 0 27 chr11 119877143 119877314 -30906239 - AluJo SINE Alu -11 301 140 2352 99 3 0 chr11 119877314 119877618 -30905935 - AluSp SINE Alu -8 305 1 1703 183 0 27 chr11 119877618 119877747 -30905806 - AluJo SINE Alu -172 140 9 25 31 0 0 chr11 119878084 119878116 -30905437 + AT_rich Low_complexity Low_complexity 1 32 0 1045 231 28 47 chr11 119878310 119878820 -30904733 - MER34B LTR ERV1 -4 561 11 777 197 43 11 chr11 119878923 119879111 -30904442 - L1MC4 LINE L1 -1099 6943 6750 2398 89 0 3 chr11 119879307 119879609 -30903944 - AluSx SINE Alu -11 301 1 225 0 0 0 chr11 119879713 119879738 -30903815 + (T)n Simple_repeat Simple_repeat 1 25 0 434 259 149 100 chr11 119880064 119880397 -30903156 - HAL1 LINE L1 -1441 1066 704 1774 163 6 10 chr11 119880397 119880710 -30902843 - AluJo SINE Alu 0 312 1 434 259 149 100 chr11 119880710 119880827 -30902726 - HAL1 LINE L1 -1803 704 594 2901 146 65 9 chr11 119880878 119881433 -30902120 - L1MB3 LINE L1 -10 6173 5588 2202 108 7 0 chr11 119881806 119882102 -30901451 - AluSx SINE Alu -14 298 1 409 317 18 30 chr11 119883354 119883521 -30900032 - MIR SINE MIR -96 166 2 1609 186 115 54 chr11 119883869 119883920 -30899633 - MLT1D LTR MaLR -15 490 444 1785 100 0 8 chr11 119883920 119884160 -30899393 + AluSq SINE Alu 64 301 -12 1609 186 115 54 chr11 119884160 119884570 -30898983 - MLT1D LTR MaLR -61 444 1 273 310 123 27 chr11 119884574 119884761 -30898792 + L2 LINE L2 2418 2622 -692 682 223 83 0 chr11 119884775 119884968 -30898585 - MER58A DNA MER1_type 0 224 16 201 382 52 15 chr11 119884970 119885106 -30898447 + L2 LINE L2 2659 2799 -515 317 354 113 0 chr11 119885122 119885317 -30898236 + MIR SINE MIR 21 237 -25 243 267 78 78 chr11 119885581 119885697 -30897856 + L2 LINE L2 3142 3257 -15 545 232 125 36 chr11 119885826 119885994 -30897559 - MIR SINE MIR -78 184 2 269 283 100 25 chr11 119886606 119886726 -30896827 - MER91A DNA MER1_type -48 148 20 1838 168 3 10 chr11 119886758 119887055 -30896498 - AluJo SINE Alu -15 297 3 208 330 96 9 chr11 119887057 119887172 -30896381 - L2 LINE L2 -251 3021 2897 1982 187 68 21 chr11 119887260 119887742 -30895811 + MLT1D LTR MaLR 1 505 0 884 221 139 34 chr11 119887886 119888267 -30895286 - LTR16B LTR ERVL -12 452 32 2083 118 7 0 chr11 119888836 119889123 -30894430 - AluSx SINE Alu -23 289 1 782 196 175 11 chr11 119889207 119889396 -30894157 - MER58A DNA MER1_type -3 221 2 2415 52 0 7 chr11 119889456 119889745 -30893808 + AluY SINE Alu 20 306 -5 729 172 10 118 chr11 119891467 119891670 -30891883 - MLT1B LTR MaLR 0 390 210 1975 93 82 0 chr11 119891700 119891969 -30891584 + AluSg SINE Alu 1 291 -19 2509 153 62 65 chr11 119891969 119892175 -30891378 - L1MA8 LINE L1 -26 6265 6060 1763 185 0 10 chr11 119892175 119892472 -30891081 - AluJo SINE Alu -18 294 1 2509 153 62 65 chr11 119892472 119892747 -30890806 - L1MA8 LINE L1 -231 6060 5784 381 43 0 0 chr11 119892747 119892794 -30890759 + (TG)n Simple_repeat Simple_repeat 2 48 0 2509 153 62 65 chr11 119892794 119892960 -30890593 - L1MA8 LINE L1 -507 5784 5619 822 175 22 79 chr11 119892976 119893204 -30890349 - MLT1B LTR MaLR -175 215 1 465 233 50 33 chr11 119893498 119893618 -30889935 + L2 LINE L2 3150 3271 -1 2028 129 10 3 chr11 119894107 119894402 -30889151 - AluSx SINE Alu -15 297 1 1047 125 90 51 chr11 119896437 119896529 -30887024 - L1MD3 LINE L1 0 7995 7908 2105 98 63 0 chr11 119896529 119896816 -30886737 - AluSc SINE Alu -4 305 1 1047 125 90 51 chr11 119896816 119896979 -30886574 - L1MD3 LINE L1 -87 7908 7730 1823 188 0 13 chr11 119897870 119898178 -30885375 - AluJo SINE Alu -8 304 1 21 36 0 0 chr11 119898324 119898352 -30885201 + AT_rich Low_complexity Low_complexity 1 28 0 331 211 0 99 chr11 119899711 119899776 -30883777 - L1M4 LINE L1 -3734 2412 2342 2216 101 0 0 chr11 119899776 119900064 -30883489 - AluSx SINE Alu -24 288 1 331 211 0 99 chr11 119900064 119900159 -30883394 - L1M4 LINE L1 -3804 2342 2268 315 291 209 6 chr11 119900479 119900651 -30882902 - HAL1 LINE L1 -852 1655 1449 597 217 130 9 chr11 119901287 119901517 -30882036 - L1MC5 LINE L1 -726 7235 6978 184 57 0 132 chr11 119901798 119901851 -30881702 + (T)n Simple_repeat Simple_repeat 1 46 0 7474 12 0 9 chr11 119901853 119902833 -30880720 - L1HS LINE L1 -2 6153 5183 2791 67 5 0 chr11 119902827 119903217 -30880336 - L1P LINE L1 -5752 394 3 * 5272 152 27 42 chr11 119903743 119904456 -30879097 - L1MC1 LINE L1 -2 6331 5609 2228 90 0 3 chr11 119904456 119904745 -30878808 - AluY SINE Alu -23 288 1 5272 152 27 42 chr11 119904745 119904971 -30878582 - L1MC1 LINE L1 -724 5609 5381 1463 124 0 18 chr11 119904971 119905188 -30878365 - AluJb SINE Alu -16 296 84 5272 152 27 42 chr11 119905188 119905500 -30878053 - L1MC1 LINE L1 -952 5381 5090 636 288 60 22 chr11 119905612 119905931 -30877622 - L1MC5 LINE L1 -1886 5922 5592 364 281 61 31 chr11 119905938 119906134 -30877419 - L1MC4 LINE L1 -5 8037 7836 393 288 45 51 chr11 119906189 119906366 -30877187 - L1ME2 LINE L1 -19 6145 5970 262 270 99 9 chr11 119906873 119906984 -30876569 + L2 LINE L2 3150 3270 -2 217 253 100 100 chr11 119907082 119907232 -30876321 + L2 LINE L2 2934 3083 -189 922 143 0 0 chr11 119907599 119907725 -30875828 + FLAM_C SINE Alu 6 131 -12 964 230 173 43 chr11 119908742 119909489 -30874064 + Charlie2 DNA MER1_type 1856 2699 -163 784 176 38 0 chr11 119910426 119910557 -30872996 - AluJb SINE Alu -55 257 122 2198 65 41 0 chr11 119910563 119910857 -30872696 - L1PA7 LINE L1 -7 6147 5842 524 138 53 0 chr11 119911558 119911652 -30871901 - Tigger7 DNA MER2_type 0 2587 2489 * 1360 163 26 41 chr11 119911650 119911920 -30871633 - Tigger7 DNA MER2_type -466 267 2 499 207 103 69 chr11 119911925 119912070 -30871483 - MIR SINE MIR -108 154 5 2254 106 0 6 chr11 119912258 119912570 -30870983 + AluSg SINE Alu 1 310 0 352 287 57 6 chr11 119912686 119912843 -30870710 + L1ME LINE L1 5527 5691 -430 2258 89 0 0 chr11 119913826 119914135 -30869418 - AluSx SINE Alu 0 310 2 783 258 215 22 chr11 119916315 119916832 -30866721 + L2 LINE L2 2642 3283 -30 1259 260 66 66 chr11 119916878 119917420 -30866133 - MLT1F LTR MaLR 0 542 1 288 309 122 28 chr11 119917911 119918092 -30865461 - MIR SINE MIR -56 206 9 446 219 58 9 chr11 119918315 119918444 -30865109 + MIR SINE MIR 35 168 -62 310 335 81 23 chr11 119919148 119919321 -30864232 - MIR3 SINE MIR -7 201 19 2205 109 10 13 chr11 119919330 119919643 -30863910 - AluSx SINE Alu 0 312 1 820 130 72 85 chr11 119920726 119920949 -30862604 + L1MA8 LINE L1 6071 6290 -1 2260 90 0 0 chr11 119920999 119921287 -30862266 - AluSc SINE Alu -21 288 1 240 345 58 0 chr11 119922578 119922665 -30860888 + L2 LINE L2 2970 3061 -211 2246 120 0 0 chr11 119923631 119923931 -30859622 - AluSx SINE Alu -12 300 1 3061 127 58 16 chr11 119924629 119925197 -30858356 - L1MC1 LINE L1 -18 6315 5724 347 197 180 25 chr11 119925203 119925325 -30858228 - MER31-int LTR ERV1 -1166 3770 3630 1761 109 0 11 chr11 119925549 119925815 -30857738 - L1MC1 LINE L1 -578 5755 5493 709 177 31 139 chr11 119925812 119926129 -30857424 - L1M4 LINE L1 -2133 4293 4011 * 240 178 30 40 chr11 119926113 119926214 -30857339 - L1MCa LINE L1 -1709 4717 4618 * 1817 151 0 0 chr11 119926231 119926490 -30857063 - AluSx SINE Alu -16 296 38 334 233 27 0 chr11 119926491 119926564 -30856989 - L1M4 LINE L1 -2786 3360 3286 1317 221 16 0 chr11 119926579 119926891 -30856662 - L1MCa LINE L1 -1821 4605 4289 1389 245 114 19 chr11 119926891 119927556 -30855997 - L1MCa LINE L1 -2402 4024 3297 4355 135 147 14 chr11 119927603 119928515 -30855038 - Tigger3b DNA MER2_type -124 1107 75 1104 164 126 5 chr11 119928516 119928723 -30854830 - AluJo SINE Alu -80 232 1 458 184 0 0 chr11 119928725 119928801 -30854752 - Tigger3b DNA MER2_type -1155 76 1 8797 181 96 38 chr11 119928801 119929011 -30854542 - L1MCa LINE L1 -3121 3305 3109 2124 118 0 0 chr11 119929011 119929291 -30854262 - AluSx SINE Alu -32 280 1 8797 181 96 38 chr11 119929291 119932205 -30851348 - L1MCa LINE L1 -3317 3109 1 289 175 217 25 chr11 119932477 119932597 -30850956 + L1MC5 LINE L1 7786 7928 -33 1465 173 13 50 chr11 119932890 119933190 -30850363 + AluJo SINE Alu 1 289 -23 1847 136 14 17 chr11 119933760 119934054 -30849499 - AluSx SINE Alu -19 293 1 26 30 0 0 chr11 119934068 119934101 -30849452 + AT_rich Low_complexity Low_complexity 1 33 0 490 149 198 0 chr11 119934441 119934562 -30848991 - L1MA8 LINE L1 -2 6289 6145 2214 114 0 7 chr11 119934963 119935269 -30848284 - AluSq SINE Alu -9 304 1 430 251 69 91 chr11 119935363 119935534 -30848019 - MIR SINE MIR 0 262 96 1907 149 3 20 chr11 119935534 119935836 -30847717 + AluSx SINE Alu 1 297 -15 430 251 69 91 chr11 119935836 119935895 -30847658 - MIR SINE MIR -166 96 37 21 0 0 0 chr11 119936762 119936783 -30846770 + AT_rich Low_complexity Low_complexity 1 21 0 426 287 84 10 chr11 119936946 119937142 -30846411 - MIR SINE MIR -3 259 45 719 176 8 0 chr11 119937605 119937724 -30845829 - FLAM_C SINE Alu -13 120 1 273 335 65 32 chr11 119937795 119937980 -30845573 - L3b LINE CR1 -116 1467 1277 1918 155 0 7 chr11 119938265 119938549 -30845004 - AluJb SINE Alu -30 282 1 185 263 35 35 chr11 119938902 119938959 -30844594 - L2 LINE L2 -511 2803 2747 220 384 80 8 chr11 119939409 119939534 -30844019 - L2 LINE L2 -5 3267 3134 945 251 18 5 chr11 119939635 119939854 -30843699 - MIR SINE MIR -29 233 12 277 276 66 66 chr11 119940218 119940370 -30843183 - MIR SINE MIR -24 238 87 204 111 0 0 chr11 119940891 119940927 -30842626 + (GAA)n Simple_repeat Simple_repeat 1 36 0 595 279 75 46 chr11 119941965 119942205 -30841348 - MIR SINE MIR -15 247 1 3081 197 86 20 chr11 119942534 119943741 -30839812 - L1ME1 LINE L1 -34 6132 4847 2404 247 87 27 chr11 119943749 119944815 -30838738 - L1ME1 LINE L1 -1350 4796 3667 424 127 97 112 chr11 119945688 119945822 -30837731 - MER5C DNA MER1_type -105 219 88 348 170 94 38 chr11 119946021 119946127 -30837426 - L1ME4a LINE L1 -10 6111 6000 1690 194 0 13 chr11 119946161 119946475 -30837078 - AluJo SINE Alu -2 310 1 383 197 145 0 chr11 119946519 119946636 -30836917 - L1ME4a LINE L1 -265 5856 5723 548 199 183 0 chr11 119947327 119947458 -30836095 + FRAM SINE Alu 1 155 -21 198 338 88 0 chr11 119948090 119948170 -30835383 + L2 LINE L2 3186 3272 0 2353 90 3 0 chr11 119948708 119949007 -30834546 - AluSx SINE Alu -12 300 1 749 162 11 141 chr11 119949169 119949354 -30834199 - AluJb SINE Alu -12 300 140 222 282 232 19 chr11 119949833 119950022 -30833531 - MIR SINE MIR -15 247 16 24 32 0 0 chr11 119950491 119950522 -30833031 + AT_rich Low_complexity Low_complexity 1 31 0 255 309 79 46 chr11 119951130 119951282 -30832271 - MIR SINE MIR -69 193 37 263 178 67 0 chr11 119952938 119952983 -30830570 - L2 LINE L2 -4 3268 3221 359 266 83 0 chr11 119953680 119953789 -30829764 - MER5C DNA MER1_type 0 324 207 1126 206 122 49 chr11 119954161 119954530 -30829023 + MSTD LTR MaLR 1 396 0 1233 243 154 18 chr11 119956399 119956852 -30826701 - LTR40a LTR ERVL -2 517 3 187 320 94 47 chr11 119957115 119957243 -30826310 + L2 LINE L2 3180 3313 0 5774 152 20 8 chr11 119957633 119959485 -30824068 - L1PA15 LINE L1 -1 6164 4123 5019 188 32 12 chr11 119959482 119959633 -30823920 + L1P LINE L1 3028 3174 -2972 * 1989 141 0 3 chr11 119959633 119959941 -30823612 + AluSx SINE Alu 1 307 0 2175 125 3 0 chr11 119959944 119960248 -30823305 + AluSg SINE Alu 3 307 -3 5019 188 32 12 chr11 119960248 119961174 -30822379 + L1P LINE L1 3175 4132 -2014 22 70 0 0 chr11 119961595 119961638 -30821915 + AT_rich Low_complexity Low_complexity 1 43 0 503 148 40 34 chr11 119962728 119962904 -30820649 + CT-rich Low_complexity Low_complexity 2 178 0 1609 147 66 8 chr11 119962935 119963194 -30820359 - AluJb SINE Alu -38 274 1 910 245 12 16 chr11 119963554 119963799 -30819754 - L1MB8 LINE L1 -5 6173 5930 2787 181 28 46 chr11 119963847 119964495 -30819058 - L1MB8 LINE L1 -176 6002 5367 432 286 31 19 chr11 119964933 119965094 -30818459 + MER117 DNA MER1_type 2 164 -33 504 327 58 27 chr11 119965718 119965978 -30817575 + L1ME LINE L1 110 377 -5693 * 764 256 129 19 chr11 119965970 119966279 -30817274 + L1ME LINE L1 2458 2800 -3280 1149 238 69 14 chr11 119966343 119966620 -30816933 - AluJo SINE Alu -10 292 1 312 27 0 0 chr11 119966707 119966744 -30816809 + (TC)n Simple_repeat Simple_repeat 2 38 0 584 126 0 0 chr11 119966769 119966856 -30816697 - AluY SINE Alu -224 87 1 371 192 51 0 chr11 119968190 119968268 -30815285 - Charlie4 DNA MER1_type -31 1930 1849 21 82 0 0 chr11 119968368 119968417 -30815136 + AT_rich Low_complexity Low_complexity 1 49 0 968 189 12 12 chr11 119968418 119968587 -30814966 - FRAM SINE Alu -14 162 1 340 271 23 15 chr11 119969315 119969448 -30814105 - FRAM SINE Alu -5 161 28 763 167 8 0 chr11 119969482 119969635 -30813918 - FLAM_C SINE Alu 0 154 1 468 187 37 28 chr11 119970088 119970195 -30813358 + Charlie4 DNA MER1_type 1847 1954 -7 232 178 0 22 chr11 119971505 119971550 -30812003 + L2 LINE L2 3266 3309 -4 272 167 17 0 chr11 119972970 119973030 -30810523 + Charlie7 DNA MER1_type 32 92 -2520 940 205 73 10 chr11 119973943 119974148 -30809405 + MER58A DNA MER1_type 7 224 0 608 260 56 31 chr11 119974245 119974441 -30809112 + MIR SINE MIR 1 201 -61 296 221 13 0 chr11 119974484 119974561 -30808992 + CT-rich Low_complexity Low_complexity 2 79 0 1455 209 91 45 chr11 119976987 119977470 -30806083 - MLT1D LTR MaLR 0 505 1 25 31 0 0 chr11 119977748 119977780 -30805773 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr11 119979230 119979252 -30804301 + AT_rich Low_complexity Low_complexity 1 22 0 231 259 26 112 chr11 119980571 119980687 -30802866 + MIR3 SINE MIR 88 193 -15 23 0 0 0 chr11 119982705 119982728 -30800825 + AT_rich Low_complexity Low_complexity 1 23 0 2225 103 10 3 chr11 119982940 119983241 -30800312 + AluSq SINE Alu 1 303 -10 222 266 76 63 chr11 119985291 119985370 -30798183 + L2 LINE L2 3193 3272 0 427 139 0 42 chr11 119986308 119986380 -30797173 + Tigger2 DNA MER2_type 1 69 -2649 * 2853 116 15 51 chr11 119986366 119986833 -30796720 + Tigger2 DNA MER2_type 2269 2718 0 374 299 91 33 chr11 119986859 119987133 -30796420 + Charlie7 DNA MER1_type 42 331 -2281 369 251 131 40 chr11 119987464 119987639 -30795914 - L1MEc LINE L1 -4729 1581 1391 291 197 45 15 chr11 119987677 119987743 -30795810 - L1MEc LINE L1 -4866 1253 1186 731 224 73 80 chr11 119987808 119988272 -30795281 - L1MEc LINE L1 -5036 1083 623 1621 158 75 13 chr11 119988295 119988681 -30794872 - Charlie1 DNA MER1_type -14 2747 2338 180 111 0 0 chr11 119988681 119988708 -30794845 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1508 104 31 35 chr11 119988708 119988968 -30794585 - L1MA1 LINE L1 -3 6299 6041 5536 78 30 29 chr11 119988968 119989902 -30793651 - L1MA2 LINE L1 -209 6095 5161 1847 94 59 4 chr11 119989902 119990157 -30793396 - AluY SINE Alu 0 311 43 1093 228 162 8 chr11 119990174 119990525 -30793028 - MER90 LTR ERV1 -166 448 44 794 216 29 0 chr11 119990560 119990731 -30792822 - Charlie1a DNA MER1_type -945 510 335 915 259 100 48 chr11 119990733 119991193 -30792360 + MLT1D LTR MaLR 2 485 -20 1347 89 5 26 chr11 119991194 119991384 -30792169 + MER1B DNA MER1_type 33 218 -79 446 181 0 0 chr11 119991386 119991458 -30792095 + MER1B DNA MER1_type 268 339 0 * 520 231 107 0 chr11 119991458 119991577 -30791976 - Charlie1a DNA MER1_type -1277 178 47 24 0 0 0 chr11 119992000 119992024 -30791529 + AT_rich Low_complexity Low_complexity 1 24 0 1880 130 43 0 chr11 119995616 119995892 -30787661 - AluSx SINE Alu -21 291 4 217 184 20 0 chr11 119995989 119996038 -30787515 + T-rich Low_complexity Low_complexity 2 51 0 258 345 50 0 chr11 119998611 119998730 -30784823 + MIR SINE MIR 79 203 -59 290 355 92 0 chr11 119998745 119998886 -30784667 - L2 LINE L2 0 3313 3160 888 141 7 0 chr11 119999471 119999620 -30783933 - L1MB2 LINE L1 -4 6167 6018 2346 120 21 0 chr11 119999724 120000099 -30783454 - L1PB1 LINE L1 0 6151 5769 1899 129 4 0 chr11 120000220 120000484 -30783069 - AluSx SINE Alu -43 269 5 347 91 0 0 chr11 120000484 120000528 -30783025 - AluY SINE Alu -259 44 1 6278 169 37 10 chr11 120000531 120002414 -30781139 - L1PB1 LINE L1 -370 5781 3852 2286 74 6 64 chr11 120002688 120003014 -30780539 + AluSc SINE Alu 1 307 -2 623 273 65 41 chr11 120004083 120004376 -30779177 + L1MC/D LINE L1 5359 5658 -2150 248 280 160 76 chr11 120004752 120005027 -30778526 + L2 LINE L2 3015 3312 -1 1587 171 7 44 chr11 120005523 120005821 -30777732 - AluJb SINE Alu -15 297 11 688 218 14 0 chr11 120005991 120006133 -30777420 - L1ME2 LINE L1 -19 6145 6002 1950 43 4 4 chr11 120006283 120006517 -30777036 + AluY SINE Alu 74 307 -4 4032 87 38 22 chr11 120007030 120007660 -30775893 - MER51C LTR ERV1 0 640 1 1894 160 0 7 chr11 120008046 120008352 -30775201 - AluSx SINE Alu -8 304 1 403 295 93 26 chr11 120008684 120008855 -30774698 - MIR SINE MIR -42 220 34 2262 116 3 0 chr11 120009175 120009486 -30774067 - AluSx SINE Alu 0 312 1 353 298 91 60 chr11 120010716 120010968 -30772585 - HAL1 LINE L1 -2246 261 2 764 258 76 8 chr11 120012275 120012539 -30771014 - L1ME2 LINE L1 -150 6012 5731 471 226 33 119 chr11 120012639 120012882 -30770671 - L1ME LINE L1 -5539 531 310 1819 228 80 13 chr11 120013099 120013559 -30769994 + MLT1E2 LTR MaLR 136 626 0 350 266 95 32 chr11 120013580 120013738 -30769815 - L1ME LINE L1 -5900 170 3 2080 136 23 0 chr11 120013782 120014084 -30769469 - AluSx SINE Alu -3 309 1 30 0 0 24 chr11 120014101 120014115 -30769438 + AT_rich Low_complexity Low_complexity 1 14 -26 10327 46 30 0 chr11 120014115 120016143 -30767410 + L1PA6 LINE L1 4100 6154 0 30 0 0 24 chr11 120016143 120016169 -30767384 + AT_rich Low_complexity Low_complexity 14 40 0 252 311 135 21 chr11 120016376 120016569 -30766984 + MIR SINE MIR 31 245 -17 3034 138 73 4 chr11 120017396 120017918 -30765635 - L1PA16 LINE L1 -2 6164 5607 217 402 93 9 chr11 120019601 120019708 -30763845 + L2 LINE L2 3116 3231 -41 266 320 57 42 chr11 120019736 120020067 -30763486 - L2 LINE L2 -1362 1952 1617 3844 165 54 6 chr11 120020133 120020853 -30762700 - L1PA16 LINE L1 0 7604 6850 600 152 143 0 chr11 120020873 120020978 -30762575 - AluJb SINE Alu -25 287 168 2841 187 20 11 chr11 120020978 120021588 -30761965 - L1PA16 LINE L1 -815 6769 6155 7333 227 52 24 chr11 120021598 120021849 -30761704 - L1PA16 LINE L1 -2208 5376 5134 258 32 0 0 chr11 120021849 120021880 -30761673 + (TTG)n Simple_repeat Simple_repeat 3 33 0 7333 227 52 24 chr11 120021880 120024112 -30759441 - L1PA16 LINE L1 -2450 5134 2966 2218 90 14 3 chr11 120024112 120024401 -30759152 + AluSp SINE Alu 1 292 -21 7333 227 52 24 chr11 120024401 120024823 -30758730 - L1PA16 LINE L1 -4618 2966 2348 2147 126 0 0 chr11 120024823 120025124 -30758429 - AluSp SINE Alu -12 301 1 7333 227 52 24 chr11 120025124 120025252 -30758301 - L1PA16 LINE L1 -5236 2348 2225 866 235 43 39 chr11 120026159 120026389 -30757164 - MLT1L LTR MaLR -9 606 376 414 202 24 0 chr11 120026396 120026480 -30757073 + MER5B DNA MER1_type 73 158 -20 313 258 121 0 chr11 120026488 120026612 -30756941 - MLT1L LTR MaLR -439 176 38 239 311 84 17 chr11 120027286 120027405 -30756148 + L2 LINE L2 2656 2782 -532 645 280 158 26 chr11 120027461 120027862 -30755691 + MLT1G1 LTR MaLR 1 535 -60 612 266 21 42 chr11 120027916 120028157 -30755396 - L1ME1 LINE L1 -4 6162 5927 2264 224 80 20 chr11 120028175 120029419 -30754134 - L1ME1 LINE L1 -431 5733 4420 318 233 26 26 chr11 120030008 120030124 -30753429 - L1ME1 LINE L1 -1742 4404 4289 * 3309 92 18 89 chr11 120030122 120030741 -30752812 - L1MA4A LINE L1 -168 6135 5561 1946 267 81 35 chr11 120030724 120031276 -30752277 - L1ME1 LINE L1 -1871 4275 3750 * 2092 124 3 10 chr11 120031276 120031590 -30751963 - AluSx SINE Alu 0 312 1 1946 267 81 35 chr11 120031590 120031771 -30751782 - L1ME1 LINE L1 -2396 3750 3579 4556 55 0 56 chr11 120031771 120032411 -30751142 - L1PA5 LINE L1 -3 6151 5548 1946 267 81 35 chr11 120032411 120032613 -30750940 - L1ME1 LINE L1 -2567 3579 3388 213 39 0 0 chr11 120032613 120032639 -30750914 + (TC)n Simple_repeat Simple_repeat 1 26 0 1946 267 81 35 chr11 120032639 120032765 -30750788 - L1ME1 LINE L1 -2758 3388 3163 1180 218 92 16 chr11 120033154 120033470 -30750083 + MSTD LTR MaLR 1 340 -56 2293 99 0 0 chr11 120033501 120033793 -30749760 - AluSc SINE Alu -17 292 1 357 164 60 0 chr11 120033793 120033860 -30749693 + MSTD LTR MaLR 326 396 0 1892 147 33 25 chr11 120034743 120035104 -30748449 - L1MB2 LINE L1 -5 6166 5803 872 188 35 15 chr11 120035914 120036111 -30747442 - MER105 DNA DNA 0 204 4 322 313 97 8 chr11 120036186 120036320 -30747233 + L2 LINE L2 3164 3309 -4 794 122 0 143 chr11 120036376 120036565 -30746988 - FRAM SINE Alu -4 162 1 2171 63 46 46 chr11 120036625 120036927 -30746626 + AluY SINE Alu 3 304 -7 248 289 11 100 chr11 120038160 120038250 -30745303 - MIR SINE MIR -180 82 1 288 53 0 0 chr11 120038472 120038510 -30745043 + (TG)n Simple_repeat Simple_repeat 2 39 0 1070 168 124 0 chr11 120038593 120038802 -30744751 - MER46A DNA MER2_type 0 236 2 2090 98 37 0 chr11 120039773 120040070 -30743483 + AluSp SINE Alu 1 308 -5 1612 191 7 10 chr11 120040675 120040978 -30742575 + AluJb SINE Alu 1 302 -10 1784 261 54 36 chr11 120040986 120041545 -30742008 - MLT1E LTR MaLR -24 569 1 2278 95 0 16 chr11 120042405 120042722 -30740831 - AluSq SINE Alu -1 312 1 721 304 155 40 chr11 120042913 120043733 -30739820 - L2 LINE L2 -23 3290 2386 343 341 150 28 chr11 120044088 120044587 -30738966 - L2 LINE L2 -942 2372 1813 329 234 168 9 chr11 120046062 120046169 -30737384 - L2 LINE L2 -1 3312 3189 193 255 0 43 chr11 120046219 120046266 -30737287 + L2 LINE L2 3250 3294 -19 238 216 340 12 chr11 120047389 120047551 -30736002 + L2 LINE L2 3095 3309 -4 25 83 0 0 chr11 120048013 120048073 -30735480 + AT_rich Low_complexity Low_complexity 1 60 0 2119 130 7 0 chr11 120049159 120049460 -30734093 + AluSx SINE Alu 1 303 -9 559 285 153 9 chr11 120049608 120049836 -30733717 - L1MC/D LINE L1 -2151 5657 5397 404 304 91 4 chr11 120050142 120050385 -30733168 - L1MC/D LINE L1 -1103 5043 4780 241 221 92 53 chr11 120051557 120051688 -30731865 - L1ME4a LINE L1 -39 6082 5947 824 233 135 23 chr11 120051805 120052020 -30731533 + MER8 DNA MER2_type 1 239 0 897 324 126 35 chr11 120052330 120052908 -30730645 + L2 LINE L2 1772 2402 -912 255 271 119 95 chr11 120052926 120053015 -30730538 + L2 LINE L2 2526 2611 -703 2233 104 0 3 chr11 120053015 120053313 -30730240 - AluSx SINE Alu -15 297 1 255 271 119 95 chr11 120053313 120053433 -30730120 + L2 LINE L2 2611 2740 -574 790 145 26 71 chr11 120053438 120053646 -30729907 + MER6 DNA MER2_type -65 865 0 604 348 190 4 chr11 120053650 120054125 -30729428 + L2 LINE L2 2751 3311 -2 22 0 0 0 chr11 120055941 120055963 -30727590 + AT_rich Low_complexity Low_complexity 1 22 0 2444 79 0 3 chr11 120056055 120056359 -30727194 - AluSx SINE Alu -9 303 1 254 260 177 10 chr11 120056569 120056665 -30726888 + MIR SINE MIR 124 235 -27 473 303 95 19 chr11 120108191 120108402 -30675151 + MIR SINE MIR 21 247 -15 212 167 42 0 chr11 120109403 120109451 -30674102 + L2 LINE L2 3264 3313 0 2175 125 0 0 chr11 120112855 120113160 -30670393 - AluY SINE Alu -6 305 1 2152 123 0 3 chr11 120113549 120113857 -30669696 + AluSx SINE Alu 1 307 -5 210 105 0 0 chr11 120113862 120113900 -30669653 + (A)n Simple_repeat Simple_repeat 1 38 0 298 292 27 26 chr11 120114447 120114569 -30668984 - MIR SINE MIR -81 127 4 186 280 40 13 chr11 120114714 120114789 -30668764 + MIR SINE MIR 65 141 -67 545 302 22 22 chr11 120115018 120115197 -30668356 - MIR SINE MIR -79 183 5 276 279 269 65 chr11 120115499 120115807 -30667746 + L2 LINE L2 2901 3271 -1 1987 159 7 0 chr11 120117939 120118247 -30665306 - AluSx SINE Alu -2 310 1 1850 73 31 19 chr11 120118372 120118633 -30664920 + MLT2A1 LTR ERVL 1 264 -180 1143 242 107 40 chr11 120118775 120119205 -30664348 + L1ME3A LINE L1 5699 6157 -13 1317 108 0 26 chr11 120119208 120119402 -30664151 + AluSg/x SINE Alu 68 256 -56 1538 201 0 18 chr11 120119441 120119725 -30663828 - AluJo SINE Alu -33 279 1 219 305 69 65 chr11 120121335 120121509 -30662044 + MIR SINE MIR 21 195 -67 1713 134 58 11 chr11 120121885 120122160 -30661393 - AluJb SINE Alu -23 289 2 185 388 0 0 chr11 120122611 120122691 -30660862 + MIR SINE MIR 30 109 -99 196 269 231 9 chr11 120123140 120123248 -30660305 - L2 LINE L2 0 3313 3182 329 285 97 79 chr11 120123335 120123563 -30659990 - MIR SINE MIR 0 262 31 217 273 191 48 chr11 120123765 120123996 -30659557 - L2 LINE L2 -604 2710 2447 368 261 229 6 chr11 120124066 120124223 -30659330 - MIR SINE MIR -2 260 69 220 294 29 0 chr11 120125597 120125665 -30657888 - MIR SINE MIR -82 180 111 485 265 61 15 chr11 120125786 120125982 -30657571 + MER112 DNA MER1_type 17 221 -39 203 324 0 46 chr11 120126233 120126341 -30657212 - MIR SINE MIR -56 206 104 204 67 0 0 chr11 120126596 120126626 -30656927 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 431 256 43 8 chr11 120127247 120127364 -30656189 + L2 LINE L2 2418 2538 -776 772 193 66 5 chr11 120127366 120127563 -30655990 + L1MD3 LINE L1 7786 7994 -1 1029 314 118 42 chr11 120127563 120128288 -30655265 + L2 LINE L2 2534 3312 -1 226 265 217 0 chr11 120128635 120128718 -30654835 + MER94 DNA DNA 34 134 0 2088 102 7 3 chr11 120129048 120129342 -30654211 + AluSp SINE Alu 1 295 -18 240 311 0 22 chr11 120130215 120130305 -30653248 + CT-rich Low_complexity Low_complexity 3 90 0 248 283 150 53 chr11 120131649 120131836 -30651717 + L3 LINE CR1 1372 1576 -1 603 176 8 16 chr11 120131929 120132054 -30651499 - FLAM_C SINE Alu 0 143 20 525 253 210 0 chr11 120132275 120132437 -30651116 + MIR SINE MIR 12 207 -55 233 292 11 27 chr11 120133711 120133802 -30649751 - MIR SINE MIR -72 136 51 253 255 0 94 chr11 120133830 120133936 -30649617 + L3 LINE CR1 1145 1240 -337 * 551 289 55 10 chr11 120133931 120134132 -30649421 + MIR SINE MIR 23 232 -30 24 32 0 0 chr11 120135929 120135960 -30647593 + AT_rich Low_complexity Low_complexity 1 31 0 2205 88 10 3 chr11 120136406 120136701 -30646852 - AluSc SINE Alu -12 297 1 1048 191 99 105 chr11 120137445 120137837 -30645716 - MLT1B LTR MaLR 0 390 1 1995 151 64 3 chr11 120138880 120139224 -30644329 + MER47A DNA MER2_type 2 366 0 25 0 0 0 chr11 120139294 120139319 -30644234 + AT_rich Low_complexity Low_complexity 1 25 0 254 167 0 106 chr11 120140251 120140317 -30643236 + MIR SINE MIR 85 143 -65 2559 305 39 17 chr11 120140745 120141699 -30641854 + L2 LINE L2 1479 2453 -861 319 255 21 32 chr11 120141697 120141791 -30641762 + L2 LINE L2 2898 2990 -323 * 2176 95 0 54 chr11 120142759 120143076 -30640477 - AluSx SINE Alu -12 300 1 367 284 149 0 chr11 120143653 120143801 -30639752 - MIR SINE MIR -73 189 20 1840 158 16 16 chr11 120145033 120145344 -30638209 + AluSx SINE Alu 1 311 -1 424 288 110 11 chr11 120146275 120146466 -30637087 + MIR SINE MIR 3 212 -50 264 224 0 30 chr11 120148349 120148416 -30635137 + MLT1F1 LTR MaLR 59 123 -444 2939 173 40 11 chr11 120148416 120148989 -30634564 + L1MC3 LINE L1 7189 7778 -7 767 158 8 8 chr11 120149174 120149294 -30634259 + AluSq/x SINE Alu 2 121 -192 2462 221 37 52 chr11 120149685 120150412 -30633141 - L1M4 LINE L1 -1121 5025 4310 22 0 0 30 chr11 120150412 120150424 -30633129 + AT_rich Low_complexity Low_complexity 1 12 -20 629 103 41 0 chr11 120150424 120150521 -30633032 - L1PA13 LINE L1 -8 6155 6055 22 0 0 30 chr11 120150521 120150541 -30633012 + AT_rich Low_complexity Low_complexity 12 32 0 957 98 0 0 chr11 120150647 120150770 -30632783 + L1PA11 LINE L1 6044 6166 -8 317 324 0 39 chr11 120150802 120150904 -30632649 + L2 LINE L2 3157 3254 -18 36 40 0 0 chr11 120151325 120151375 -30632178 + AT_rich Low_complexity Low_complexity 1 50 0 1831 87 0 28 chr11 120151460 120151714 -30631839 + AluY SINE Alu 35 281 -30 2308 71 0 52 chr11 120151814 120152122 -30631431 - AluSc SINE Alu -16 293 2 338 344 8 25 chr11 120152287 120152409 -30631144 - MIR3 SINE MIR -52 156 37 608 270 20 7 chr11 120152428 120152576 -30630977 - MER5B DNA MER1_type 0 178 29 911 182 11 17 chr11 120152614 120152795 -30630758 - L1MC4a LINE L1 0 7808 7629 265 283 0 0 chr11 120152868 120152928 -30630625 + MER5B DNA MER1_type 119 178 0 384 326 92 33 chr11 120155036 120155220 -30628333 - MIR3 SINE MIR -10 198 4 2718 97 13 20 chr11 120155375 120155431 -30628122 - L1MA2 LINE L1 0 6304 6249 2542 58 0 0 chr11 120155431 120155726 -30627827 - AluY SINE Alu -16 295 1 2718 97 13 20 chr11 120155726 120156061 -30627492 - L1MA2 LINE L1 -55 6249 5916 1681 92 0 0 chr11 120156164 120156381 -30627172 - L1PA11 LINE L1 -255 5919 5703 814 71 0 0 chr11 120156381 120156478 -30627075 + L1PA11 LINE L1 6069 6166 -8 3350 113 18 30 chr11 120156577 120156950 -30626603 - L1PA11 LINE L1 -477 5697 5321 2142 122 3 3 chr11 120156950 120157245 -30626308 - AluSq SINE Alu -18 295 1 3350 113 18 30 chr11 120157245 120157775 -30625778 - L1PA11 LINE L1 -853 5321 4797 751 151 0 0 chr11 120157788 120157894 -30625659 - U6 snRNA snRNA 0 107 2 3574 125 169 123 chr11 120158403 120158486 -30625067 + L1MC3 LINE L1 6714 6792 -993 1759 177 0 19 chr11 120158486 120158796 -30624757 + AluJo SINE Alu 1 304 -8 3574 125 169 123 chr11 120158796 120159091 -30624462 + L1MC3 LINE L1 6792 7072 -713 247 314 0 12 chr11 120159091 120159177 -30624376 + MLT1F1 LTR MaLR 40 124 -443 3574 125 169 123 chr11 120159177 120159320 -30624233 + L1MC3 LINE L1 7072 7207 -578 2419 84 3 0 chr11 120159320 120159630 -30623923 + AluY SINE Alu 1 311 0 3574 125 169 123 chr11 120159630 120160007 -30623546 + L1MC3 LINE L1 7207 7745 -40 390 234 32 65 chr11 120160109 120160263 -30623290 - L1ME LINE L1 -384 5737 5589 719 231 0 8 chr11 120160639 120160773 -30622780 + MER5A DNA MER1_type 3 135 -54 1434 179 15 15 chr11 120160814 120161082 -30622471 - L1MB8 LINE L1 -2 6176 5909 7410 63 7 7 chr11 120161082 120162084 -30621469 + L1PA8 LINE L1 5166 6167 -5 350 169 26 13 chr11 120162086 120162163 -30621390 + L1 LINE L1 3374 3451 -2695 1328 143 57 25 chr11 120162185 120162384 -30621169 - L1MB8 LINE L1 -273 5911 5701 2620 142 23 41 chr11 120162384 120162820 -30620733 - MSTC LTR MaLR 0 428 1 1328 143 57 25 chr11 120162820 120162864 -30620689 - L1MB8 LINE L1 -483 5701 5660 252 244 0 0 chr11 120162865 120162910 -30620643 + MER5A DNA MER1_type 144 188 -1 2145 96 4 0 chr11 120163090 120163360 -30620193 + AluSp SINE Alu 3 273 -40 239 338 52 0 chr11 120163469 120163546 -30620007 - L3 LINE CR1 -1163 414 334 608 261 120 5 chr11 120163653 120163837 -30619716 - MER58A DNA MER1_type -15 209 5 649 181 86 9 chr11 120163941 120164057 -30619496 + FLAM_A SINE Alu 1 125 -8 1595 206 120 42 chr11 120164597 120165029 -30618524 - MER31B LTR ERV1 0 466 1 302 238 123 143 chr11 120165487 120165731 -30617822 - L2 LINE L2 0 3272 3034 587 304 135 24 chr11 120165793 120166208 -30617345 - L2 LINE L2 -801 2513 2053 206 321 147 45 chr11 120166757 120166981 -30616572 - L2 LINE L2 -219 3053 2807 426 233 17 48 chr11 120167552 120167709 -30615844 + MER21B LTR ERV1 5 196 -409 * 668 233 25 41 chr11 120167683 120167966 -30615587 + MER21B LTR ERV1 98 428 -435 320 339 0 0 chr11 120167966 120168075 -30615478 + C-rich Low_complexity Low_complexity 4 112 0 783 214 175 40 chr11 120168078 120168432 -30615121 + MER21B LTR ERV1 400 856 -75 217 293 67 0 chr11 120168441 120168516 -30615037 - L2 LINE L2 -284 2988 2909 337 237 53 53 chr11 120168901 120169032 -30614521 + MIR SINE MIR 82 212 -50 711 78 0 0 chr11 120169328 120169431 -30614122 + (TG)n Simple_repeat Simple_repeat 1 103 0 430 200 40 20 chr11 120169757 120169857 -30613696 + L2 LINE L2 3207 3308 -5 1899 204 5 50 chr11 120169865 120170165 -30613388 - MLT1A1 LTR MaLR 0 365 84 1565 173 33 4 chr11 120170165 120170437 -30613116 - AluJb SINE Alu 0 312 33 1899 204 5 50 chr11 120170437 120170518 -30613035 - MLT1A1 LTR MaLR -281 84 1 1124 189 90 13 chr11 120170641 120170938 -30612615 - MLT1A1 LTR MaLR 0 365 13 326 167 89 56 chr11 120171231 120171321 -30612232 + L2 LINE L2 3221 3313 0 338 222 147 71 chr11 120171355 120171553 -30612000 - MIR SINE MIR -36 226 14 2256 99 0 3 chr11 120174015 120174307 -30609246 - AluSg SINE Alu -19 291 1 529 294 75 19 chr11 120174525 120174790 -30608763 + L1ME4a LINE L1 5547 5826 -295 1548 90 0 9 chr11 120174794 120175016 -30608537 + L1P4 LINE L1 5328 5547 -619 351 156 25 0 chr11 120175124 120175246 -30608307 + (TA)n Simple_repeat Simple_repeat 2 126 0 31 26 0 0 chr11 120175612 120175650 -30607903 + AT_rich Low_complexity Low_complexity 1 38 0 2353 89 0 3 chr11 120175692 120175994 -30607559 + AluSc SINE Alu 1 301 -8 370 265 111 57 chr11 120176338 120176689 -30606864 - MLT1J2 LTR MaLR -21 429 60 219 309 124 49 chr11 120177046 120177392 -30606161 + L2 LINE L2 2606 2977 -337 249 275 0 55 chr11 120178037 120178128 -30605425 - L2 LINE L2 -3 3269 3184 392 267 11 17 chr11 120178385 120178535 -30605018 - MIR SINE MIR 0 262 6 1718 212 57 46 chr11 120178954 120179411 -30604142 + MLT1C LTR MaLR 6 467 0 2248 112 0 3 chr11 120179460 120179756 -30603797 - AluSx SINE Alu -17 295 1 621 287 87 0 chr11 120179825 120180020 -30603533 + MIR SINE MIR 14 225 -37 1695 266 65 26 chr11 120180790 120181324 -30602229 + MLT1H1 LTR MaLR 1 555 0 186 284 179 0 chr11 120181999 120182066 -30601487 + L2 LINE L2 3230 3308 -5 185 189 4 0 chr11 120182354 120182387 -30601166 + MIR SINE MIR 77 140 -68 3202 145 69 7 chr11 120182577 120183129 -30600424 - L1MB7 LINE L1 -1 6183 5598 189 0 0 0 chr11 120183203 120183224 -30600329 + (TG)n Simple_repeat Simple_repeat 2 22 0 1003 205 23 0 chr11 120183401 120183616 -30599937 - MER63 DNA MER1_type -841 220 1 21 0 0 0 chr11 120185206 120185227 -30598326 + AT_rich Low_complexity Low_complexity 1 21 0 1727 163 0 14 chr11 120185414 120185709 -30597844 + AluJo SINE Alu 22 312 0 1954 141 0 10 chr11 120186152 120186449 -30597104 - AluSg1 SINE Alu -15 294 1 18826 162 33 11 chr11 120186957 120188216 -30595337 - L1M1 LINE L1 -707 7017 5787 2153 132 3 0 chr11 120188216 120188512 -30595041 - AluSq SINE Alu -16 297 1 18826 162 33 11 chr11 120188512 120190673 -30592880 - L1M1 LINE L1 -1937 5787 3675 805 68 8 8 chr11 120190673 120190791 -30592762 + (TTTC)n Simple_repeat Simple_repeat 2 119 0 18826 162 33 11 chr11 120190791 120193909 -30589644 - L1M1 LINE L1 -4049 3675 320 2491 64 0 0 chr11 120194720 120195017 -30588536 - AluY SINE Alu -14 297 1 250 233 41 14 chr11 120195709 120195782 -30587771 + CT-rich Low_complexity Low_complexity 3 77 0 1841 154 91 32 chr11 120198082 120198490 -30585063 + MSTB1 LTR MaLR 1 432 0 208 244 0 0 chr11 120199116 120199161 -30584392 + L2 LINE L2 3268 3312 -1 27 0 0 0 chr11 120199334 120199361 -30584192 + AT_rich Low_complexity Low_complexity 1 27 0 1489 130 42 103 chr11 120202862 120203240 -30580313 - LTR49-int LTR ERV1 -4605 1726 1372 530 104 52 0 chr11 120203370 120203466 -30580087 - LTR49-int LTR ERV1 -4939 1392 1292 301 257 0 27 chr11 120203534 120203608 -30579945 - tRNA-Glu-GAG tRNA tRNA 0 75 4 5703 158 35 67 chr11 120203609 120204858 -30578695 - LTR49-int LTR ERV1 -5122 1209 1 635 163 13 7 chr11 120204861 120204998 -30578555 - LTR49 LTR ERV1 -1 594 482 2054 161 101 25 chr11 120205665 120205848 -30577705 + MSTA LTR MaLR 1 169 -259 2108 119 10 3 chr11 120205848 120206141 -30577412 + AluSq SINE Alu 2 296 -17 2054 161 101 25 chr11 120206141 120206355 -30577198 + MSTA LTR MaLR 169 428 0 285 280 65 32 chr11 120206587 120206680 -30576873 - MIR SINE MIR -110 152 57 326 331 115 8 chr11 120206727 120206857 -30576696 + MER91A DNA MER1_type 1 144 -52 211 361 53 8 chr11 120206915 120207048 -30576505 + L2 LINE L2 2919 3057 -215 265 330 35 43 chr11 120207203 120207318 -30576235 + L2 LINE L2 3155 3268 -4 359 303 66 40 chr11 120208418 120208570 -30574983 + MIR SINE MIR 6 161 -101 24 0 0 0 chr11 120208922 120208946 -30574607 + AT_rich Low_complexity Low_complexity 1 24 0 552 134 71 1 chr11 120208962 120209093 -30574460 + L1M4 LINE L1 5548 5687 -491 1458 172 31 19 chr11 120209102 120209421 -30574132 - L1MB7 LINE L1 -50 6134 5812 1529 161 98 16 chr11 120209429 120209745 -30573808 - MER2 DNA MER2_type 0 344 3 232 154 0 0 chr11 120209751 120209790 -30573763 - MER2 DNA MER2_type -303 42 4 835 169 39 0 chr11 120209898 120210076 -30573477 - L1MB7 LINE L1 -434 5750 5566 592 200 196 30 chr11 120211525 120211790 -30571763 - L1MC3 LINE L1 -1629 6156 5848 1753 115 232 6 chr11 120211791 120212140 -30571413 - MSTA LTR MaLR 0 428 1 271 273 105 44 chr11 120212516 120212675 -30570878 - MIR SINE MIR -57 205 37 199 313 0 0 chr11 120213039 120213087 -30570466 + L2 LINE L2 3221 3268 -4 1729 117 0 0 chr11 120213402 120213632 -30569921 - AluSg/x SINE Alu -9 303 74 23 0 0 0 chr11 120214286 120214309 -30569244 + AT_rich Low_complexity Low_complexity 1 23 0 839 129 0 36 chr11 120214903 120215042 -30568511 - FLAM_C SINE Alu -4 139 6 230 217 277 0 chr11 120215598 120215681 -30567872 - MLT1J2 LTR MaLR -51 399 294 * 258 154 0 0 chr11 120215650 120215689 -30567864 - MLT1J1 LTR MaLR -127 319 281 2278 164 76 2 chr11 120215928 120216361 -30567192 - MLT1C LTR MaLR 0 467 3 321 304 118 0 chr11 120216703 120216805 -30566748 + L2 LINE L2 3136 3249 -23 206 354 31 0 chr11 120217280 120217345 -30566208 - L2 LINE L2 -6 3266 3200 557 286 6 6 chr11 120218218 120218389 -30565164 + MIR SINE MIR 56 226 -36 387 0 0 0 chr11 120218417 120218460 -30565093 + (TTA)n Simple_repeat Simple_repeat 2 44 0 3966 57 25 6 chr11 120218466 120218979 -30564574 - L1PA8 LINE L1 -1 6171 5649 2790 39 39 0 chr11 120218980 120219339 -30564214 - L1P3 LINE L1 -353 5819 5447 521 266 57 72 chr11 120219920 120220183 -30563370 + MLT1J2 LTR MaLR 6 264 -186 2282 120 36 22 chr11 120220333 120220692 -30562861 + THE1B LTR MaLR 1 364 0 452 300 150 26 chr11 120221145 120221378 -30562175 - MIR SINE MIR 0 262 1 304 259 88 47 chr11 120222354 120222524 -30561029 - MER5B DNA MER1_type 0 178 2 407 287 93 13 chr11 120225223 120225460 -30558093 + HAL1 LINE L1 1287 1542 -965 254 89 0 54 chr11 120225527 120225583 -30557970 + (A)n Simple_repeat Simple_repeat 1 53 0 889 330 59 56 chr11 120225826 120226505 -30557048 + L1ME LINE L1 3484 4164 -1982 22 0 0 0 chr11 120226927 120226949 -30556604 + AT_rich Low_complexity Low_complexity 1 22 0 1509 109 30 15 chr11 120226952 120227218 -30556335 - L1MA5 LINE L1 -3 6297 6028 367 277 14 61 chr11 120227249 120227397 -30556156 + L1ME LINE L1 4692 4832 -1314 363 323 40 4 chr11 120227688 120227936 -30555617 + L1ME LINE L1 5259 5515 -829 2728 82 0 0 chr11 120228003 120228383 -30555170 - L1PA8A LINE L1 -29 6102 5723 311 307 39 0 chr11 120228381 120228508 -30555045 + L1ME LINE L1 5508 5639 -482 * 2069 155 19 11 chr11 120228515 120228877 -30554676 + MLT1A1 LTR MaLR 1 365 0 1470 198 114 35 chr11 120228920 120229350 -30554203 + MLT2B1 LTR ERVL 1 464 -56 185 132 26 0 chr11 120229670 120229708 -30553845 + (TA)n Simple_repeat Simple_repeat 1 39 0 22 94 0 0 chr11 120229865 120229929 -30553624 + AT_rich Low_complexity Low_complexity 1 64 0 3720 98 30 48 chr11 120231679 120232288 -30551265 - MER4A LTR ERV1 0 600 3 1277 271 96 21 chr11 120232931 120233894 -30549659 + L1ME LINE L1 278 1307 -4773 2872 156 63 90 chr11 120233894 120234793 -30548760 + Charlie1 DNA MER1_type 1886 2760 -1 788 211 6 13 chr11 120235696 120235852 -30547701 - AluJb SINE Alu -25 287 133 874 177 0 0 chr11 120236044 120236185 -30547368 - FAM SINE Alu -44 141 1 234 0 0 0 chr11 120236527 120236553 -30547000 + (ATG)n Simple_repeat Simple_repeat 1 26 0 202 250 0 0 chr11 120236894 120236938 -30546615 + T-rich Low_complexity Low_complexity 1 44 0 833 153 0 0 chr11 120237126 120237250 -30546303 + FLAM_C SINE Alu 1 124 -19 27 0 0 0 chr11 120237251 120237278 -30546275 + AT_rich Low_complexity Low_complexity 1 27 0 181 389 0 0 chr11 120239138 120239228 -30544325 - MIR SINE MIR -107 155 66 632 208 213 16 chr11 120239374 120239557 -30543996 - MER20 DNA MER1_type 0 219 1 256 276 0 0 chr11 120239669 120239727 -30543826 - MER117 DNA MER1_type -139 58 1 2169 84 4 0 chr11 120240299 120240574 -30542979 + AluY SINE Alu 1 276 -35 2460 70 0 3 chr11 120240585 120240887 -30542666 + AluSc SINE Alu 1 301 -8 258 214 20 10 chr11 120240887 120240974 -30542579 + GA-rich Low_complexity Low_complexity 10 100 0 21 0 0 0 chr11 120242004 120242025 -30541528 + AT_rich Low_complexity Low_complexity 1 21 0 340 407 40 6 chr11 120242146 120242323 -30541230 - L2 LINE L2 0 3272 3090 25 0 0 0 chr11 120242779 120242804 -30540749 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr11 120244756 120244777 -30538776 + AT_rich Low_complexity Low_complexity 1 21 0 2213 106 3 7 chr11 120246257 120246560 -30536993 - AluSx SINE Alu -10 302 1 450 291 97 12 chr11 120247188 120247353 -30536200 + MIR SINE MIR 14 192 -70 213 279 132 32 chr11 120247771 120247961 -30535592 - L2 LINE L2 -71 3242 3034 5058 150 32 8 chr11 120248483 120249329 -30534224 - L1MC2 LINE L1 -32 6312 5447 235 202 53 64 chr11 120250654 120250748 -30532805 - L1ME4a LINE L1 0 6121 6029 776 262 86 0 chr11 120250852 120251119 -30532434 - L1ME4a LINE L1 -294 5827 5538 21 0 0 0 chr11 120253177 120253198 -30530355 + AT_rich Low_complexity Low_complexity 1 21 0 250 230 222 8 chr11 120253253 120253379 -30530174 - MIR SINE MIR -10 252 100 338 264 223 14 chr11 120253502 120253650 -30529903 + MIR SINE MIR 45 223 -39 227 371 69 0 chr11 120254162 120254278 -30529275 + MIR SINE MIR 114 237 -25 2371 92 0 3 chr11 120255865 120256170 -30527383 - AluSq SINE Alu -9 304 1 1873 162 3 0 chr11 120256742 120257038 -30526515 + AluJo SINE Alu 4 300 -12 229 254 30 0 chr11 120257221 120257288 -30526265 + MLT1K LTR MaLR 520 588 0 623 294 147 25 chr11 120257461 120257862 -30525691 + MLT1K LTR MaLR 132 581 -7 332 244 218 41 chr11 120258033 120258304 -30525249 + MLT1I LTR MaLR 91 409 0 242 181 56 69 chr11 120258342 120258414 -30525139 - L2 LINE L2 -2 3311 3241 193 243 0 0 chr11 120259580 120259617 -30523936 - MER5A DNA MER1_type 0 189 153 740 288 131 4 chr11 120259932 120260129 -30523424 + L2 LINE L2 1820 2063 -1251 201 39 0 0 chr11 120260129 120260155 -30523398 + (TC)n Simple_repeat Simple_repeat 2 27 0 740 288 131 4 chr11 120260155 120260231 -30523322 + L2 LINE L2 2063 2128 -1186 5132 102 11 6 chr11 120260235 120260934 -30522619 - HSMAR1 DNA Mariner -3 1284 582 3282 87 58 0 chr11 120260982 120261433 -30522120 - HSMAR1 DNA Mariner -808 479 3 1933 220 93 85 chr11 120261435 120262054 -30521499 + L2 LINE L2 2166 2793 -521 4385 169 31 6 chr11 120262054 120262769 -30520784 + MER44D DNA MER2_type 1 605 0 1933 220 93 85 chr11 120262769 120262881 -30520672 + L2 LINE L2 2793 2903 -411 2094 134 10 0 chr11 120262894 120263075 -30520478 - AluSq SINE Alu 0 313 135 405 0 0 0 chr11 120263075 120263120 -30520433 + (TG)n Simple_repeat Simple_repeat 2 46 0 12098 74 18 13 chr11 120263120 120265480 -30518073 - L1PA7 LINE L1 -11 6143 3774 2094 134 10 0 chr11 120265480 120265603 -30517950 - AluSq SINE Alu -177 136 5 230 294 101 0 chr11 120265663 120265782 -30517771 + L2 LINE L2 3019 3149 -164 967 133 58 93 chr11 120265818 120266012 -30517541 + MSTB LTR MaLR 182 400 -26 818 169 0 0 chr11 120266025 120266143 -30517410 - FLAM_C SINE Alu -23 120 3 252 103 26 0 chr11 120266144 120266183 -30517370 + MSTB LTR MaLR 389 428 0 2371 68 0 10 chr11 120266351 120266644 -30516909 - AluSp SINE Alu -23 290 1 3009 132 2 9 chr11 120266693 120267132 -30516421 - Charlie3 DNA MER1_type -2274 436 1 351 65 0 0 chr11 120267169 120267215 -30516338 + (CA)n Simple_repeat Simple_repeat 2 47 0 * 441 36 0 0 chr11 120267214 120267269 -30516284 + (TC)n Simple_repeat Simple_repeat 1 55 0 2360 149 13 15 chr11 120267399 120267788 -30515765 + L1PB4 LINE L1 5767 6154 -2 308 77 19 0 chr11 120268105 120268157 -30515396 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 713 273 20 40 chr11 120268487 120268740 -30514813 - MIR SINE MIR -7 255 8 1805 150 21 127 chr11 120268816 120269200 -30514353 + MLT1B LTR MaLR 5 342 -48 2116 109 3 0 chr11 120269200 120269527 -30514026 + AluSp SINE Alu 1 328 0 1805 150 21 127 chr11 120269527 120269568 -30513985 + MLT1B LTR MaLR 342 386 -4 333 82 0 0 chr11 120270336 120270385 -30513168 + (CA)n Simple_repeat Simple_repeat 2 50 0 246 32 0 0 chr11 120270384 120270415 -30513138 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 263 195 23 23 chr11 120271701 120271788 -30511765 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 21 0 0 0 chr11 120271972 120271993 -30511560 + AT_rich Low_complexity Low_complexity 1 21 0 341 234 60 48 chr11 120272090 120272219 -30511334 - L1MC/D LINE L1 -735 5570 5462 370 327 60 0 chr11 120272232 120272400 -30511153 + MIR SINE MIR 75 252 -10 191 186 23 23 chr11 120272400 120272443 -30511110 - L2 LINE L2 -1998 1316 1274 * 815 253 52 22 chr11 120272427 120272656 -30510897 + MIR SINE MIR 13 248 -14 26 0 0 0 chr11 120272672 120272698 -30510855 + AT_rich Low_complexity Low_complexity 1 26 0 340 239 72 51 chr11 120272706 120272949 -30510604 - L1MC/D LINE L1 -694 5427 5187 275 353 103 0 chr11 120273534 120273650 -30509903 + L2 LINE L2 3137 3264 -8 401 258 3 59 chr11 120273796 120274104 -30509449 + GA-rich Low_complexity Low_complexity 1 290 0 284 318 6 45 chr11 120274055 120274231 -30509322 + G-rich Low_complexity Low_complexity 5 173 0 * 289 308 116 11 chr11 120326314 120326452 -30457101 + MIR SINE MIR 13 163 -45 690 243 164 75 chr11 120326966 120327394 -30456159 - MLT1J LTR MaLR -45 466 1 413 271 11 158 chr11 120327394 120327677 -30455876 + MER102a DNA MER1_type 82 322 -8 308 347 103 28 chr11 120327705 120327918 -30455635 - MIR SINE MIR -11 251 23 1961 131 10 0 chr11 120328086 120328376 -30455177 - AluSx SINE Alu -19 293 1 189 0 0 0 chr11 120328838 120328859 -30454694 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 225 314 89 16 chr11 120328860 120328984 -30454569 - L2 LINE L2 -13 3300 3168 190 267 163 12 chr11 120329054 120329140 -30454413 + MIR SINE MIR 89 187 -75 224 297 125 0 chr11 120329296 120329360 -30454193 - MIR SINE MIR -103 105 34 440 175 0 41 chr11 120329679 120329776 -30453777 - MIR SINE MIR -54 208 116 1810 138 13 46 chr11 120329776 120330080 -30453473 - AluSx SINE Alu -18 294 1 217 313 15 0 chr11 120331324 120331391 -30452162 - L2 LINE L2 -218 3054 2987 718 222 0 0 chr11 120331464 120331581 -30451972 + AluJo/FLAM SINE Alu 2 118 -194 1981 109 7 7 chr11 120331583 120331909 -30451644 - AluSq SINE Alu 0 326 1 249 108 0 0 chr11 120331919 120331956 -30451597 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 333 118 0 0 chr11 120332011 120332062 -30451491 + (GGGA)n Simple_repeat Simple_repeat 2 52 0 8101 25 0 0 chr11 120332963 120334039 -30449514 - L1PA4 LINE L1 0 6155 5082 2164 98 4 0 chr11 120334045 120334322 -30449231 - AluSp SINE Alu -20 293 16 310 257 140 7 chr11 120334617 120334753 -30448800 + MIR SINE MIR 70 223 -39 244 330 90 0 chr11 120334870 120334970 -30448583 + L2 LINE L2 3150 3258 -14 181 253 32 105 chr11 120335116 120335211 -30448342 + L2 LINE L2 3147 3234 -38 495 0 0 0 chr11 120335310 120335365 -30448188 + (TG)n Simple_repeat Simple_repeat 1 55 0 1176 129 57 0 chr11 120335803 120335996 -30447557 + L1PB1 LINE L1 5948 6151 0 2055 151 0 3 chr11 120336613 120336924 -30446629 - AluSq SINE Alu -2 311 2 338 270 67 0 chr11 120336998 120337087 -30446466 - MIR3 SINE MIR -27 181 87 307 335 55 28 chr11 120337758 120337940 -30445613 + L3b LINE CR1 1183 1369 -214 342 314 22 7 chr11 120337957 120338024 -30445529 - MLT1K LTR MaLR -2 586 521 2360 97 0 3 chr11 120338024 120338322 -30445231 - AluSx SINE Alu -14 298 2 342 314 22 7 chr11 120338322 120338391 -30445162 - MLT1K LTR MaLR -67 521 448 335 329 88 6 chr11 120338408 120338578 -30444975 - MIR SINE MIR -21 241 58 393 133 86 9 chr11 120338678 120338792 -30444761 - LTR50 LTR ERVL 0 795 401 3020 80 0 3 chr11 120338850 120339226 -30444327 + L1PA7 LINE L1 5765 6139 -15 339 152 291 4 chr11 120339237 120339384 -30444169 - LTR50 LTR ERVL -422 373 122 431 321 93 10 chr11 120339803 120339996 -30443557 + MIR SINE MIR 20 228 -34 195 42 0 0 chr11 120340614 120340638 -30442915 + (GA)n Simple_repeat Simple_repeat 1 24 0 645 157 9 0 chr11 120340727 120340835 -30442718 - MLT2B2 LTR ERVL 0 515 407 251 111 67 22 chr11 120340935 120340980 -30442573 - MLT2B3 LTR ERVL -507 47 1 333 268 37 0 chr11 120342016 120342098 -30441455 + MER21B LTR ERV1 12 96 -767 2284 107 0 0 chr11 120342113 120342402 -30441151 - AluSx SINE Alu -23 289 1 1750 271 95 24 chr11 120342449 120343068 -30440485 + MER21B LTR ERV1 98 760 -103 203 250 226 0 chr11 120343139 120343223 -30440330 + MIR SINE MIR 47 149 -113 568 232 58 47 chr11 120343598 120343659 -30439894 + MIR SINE MIR 1 60 -202 1426 208 18 91 chr11 120343659 120344053 -30439500 + MLT1A1 LTR MaLR 1 365 0 568 232 58 47 chr11 120344053 120344181 -30439372 + MIR SINE MIR 60 192 -70 350 250 60 0 chr11 120345010 120345094 -30438459 - MIR3 SINE MIR -52 156 68 215 293 173 0 chr11 120345725 120345800 -30437753 - MER91C DNA MER1_type -2 138 51 874 223 10 36 chr11 120347179 120347372 -30436181 + MER5A DNA MER1_type 1 188 -1 356 202 45 22 chr11 120348317 120348406 -30435147 + MIR SINE MIR 96 186 -76 3114 106 0 4 chr11 120348843 120349314 -30434239 - L1PB1 LINE L1 -265 5886 5418 2206 105 34 0 chr11 120349339 120349635 -30433918 - AluSx SINE Alu -6 306 1 256 349 82 26 chr11 120349925 120350120 -30433433 - MLT1K LTR MaLR -380 208 3 819 247 105 2 chr11 120350124 120350549 -30433004 - L1ME LINE L1 -728 5505 5042 251 285 70 38 chr11 120350536 120350722 -30432831 - L1ME LINE L1 -2598 3617 3426 * 1681 206 3 3 chr11 120350790 120351120 -30432433 - MER58B DNA MER1_type -1 340 11 1731 266 82 11 chr11 120351127 120351944 -30431609 - L1ME LINE L1 -2819 3396 2522 2870 148 55 4 chr11 120351977 120352490 -30431063 + L1MB3 LINE L1 5631 6169 -14 1745 267 74 59 chr11 120352499 120353814 -30429739 - L1ME LINE L1 -4403 1993 660 560 143 9 0 chr11 120353920 120354025 -30429528 + L1MA6 LINE L1 6141 6246 -54 191 155 138 35 chr11 120354374 120354432 -30429121 - L2 LINE L2 -8 3264 3201 252 293 0 0 chr11 120354972 120355047 -30428506 + GA-rich Low_complexity Low_complexity 1 75 0 363 274 39 10 chr11 120355369 120355471 -30428082 + L2 LINE L2 3182 3286 -27 446 121 0 0 chr11 120355471 120355537 -30428016 + MSTA LTR MaLR 1 66 -362 2708 74 8 0 chr11 120355538 120355890 -30427663 - THE1A LTR MaLR 0 355 1 6533 102 11 10 chr11 120355890 120356854 -30426699 - THE1A-int LTR MaLR 0 1580 616 2203 87 0 3 chr11 120356841 120357164 -30426389 + L1P LINE L1 2283 2604 -3542 * 3407 64 4 0 chr11 120357264 120357730 -30425823 - THE1A-int LTR MaLR -1112 468 1 2658 90 3 0 chr11 120357730 120358084 -30425469 - THE1A LTR MaLR 0 355 1 1505 144 160 12 chr11 120358084 120358403 -30425150 + MSTA LTR MaLR 63 428 0 22 0 0 0 chr11 120358728 120358750 -30424803 + AT_rich Low_complexity Low_complexity 1 22 0 802 142 25 66 chr11 120359151 120359348 -30424205 - MER53 DNA DNA 0 189 1 1914 98 7 7 chr11 120360202 120360476 -30423077 - L1PA10 LINE L1 0 6168 5895 415 300 132 18 chr11 120360908 120361135 -30422418 - MIR SINE MIR -9 253 1 450 333 7 7 chr11 120361184 120361334 -30422219 - MIR3 SINE MIR -17 191 42 189 0 0 0 chr11 120361936 120361957 -30421596 + (T)n Simple_repeat Simple_repeat 1 21 0 420 250 0 0 chr11 120362407 120362487 -30421066 + tRNA-Ser-TCC tRNA tRNA 3 82 -3 199 250 263 12 chr11 120362732 120362812 -30420741 - L2 LINE L2 0 3272 3173 315 300 27 45 chr11 120364086 120364196 -30419357 + MIR SINE MIR 31 138 -70 539 269 181 35 chr11 120364446 120364817 -30418736 + L2 LINE L2 2316 2740 -574 696 305 73 9 chr11 120365056 120365289 -30418264 - MIR SINE MIR 0 262 15 2143 118 3 3 chr11 120367593 120367882 -30415671 + AluSg SINE Alu 1 289 -21 1180 132 11 0 chr11 120367882 120368056 -30415497 + AluSg/x SINE Alu 137 312 0 359 224 234 0 chr11 120368497 120368604 -30414949 - L2 LINE L2 0 3313 3182 2430 284 22 43 chr11 120369793 120370653 -30412900 + L1M4b LINE L1 11 852 -6007 1658 259 58 66 chr11 120371232 120373112 -30410441 + L1M4b LINE L1 1205 3203 -3935 357 224 26 0 chr11 120373126 120373202 -30410351 + L2 LINE L2 2703 2780 -534 428 198 36 60 chr11 120373250 120373498 -30410055 - HAL1 LINE L1 -863 1644 1327 378 0 0 0 chr11 120373498 120373540 -30410013 + (TG)n Simple_repeat Simple_repeat 1 42 0 2405 142 46 24 chr11 120374919 120375334 -30408219 - MSTA LTR MaLR -4 424 1 350 305 135 3 chr11 120375735 120375882 -30407671 + MIR SINE MIR 15 183 -25 757 307 107 26 chr11 120376171 120376441 -30407112 - L2 LINE L2 0 3272 2981 432 0 0 0 chr11 120377058 120377106 -30406447 + (TG)n Simple_repeat Simple_repeat 2 49 0 184 253 67 93 chr11 120377607 120377682 -30405871 - MIR SINE MIR -94 114 42 281 324 196 6 chr11 120377748 120377927 -30405626 - MIR SINE MIR -31 231 19 211 379 11 0 chr11 120380573 120380668 -30402885 - MIR SINE MIR -71 137 42 5385 43 0 1 chr11 120380874 120381561 -30401992 - L1PA3 LINE L1 0 6155 5497 263 253 23 23 chr11 120382223 120382310 -30401243 - L2 LINE L2 -298 2974 2888 212 376 82 0 chr11 120383885 120383970 -30399583 + MIR SINE MIR 43 134 -74 382 271 90 23 chr11 120384252 120384429 -30399124 + MLT1L LTR MaLR 427 615 0 285 237 34 0 chr11 120384431 120384490 -30399063 + MIR3 SINE MIR 131 191 -17 4957 86 4 57 chr11 120384763 120385574 -30397979 + L1PA13 LINE L1 5396 6163 0 240 364 93 8 chr11 120385837 120385955 -30397598 + MIR SINE MIR 16 143 -65 333 356 50 6 chr11 120386712 120386872 -30396681 + MIR SINE MIR 2 168 -94 204 380 101 23 chr11 120387563 120387692 -30395861 + L2 LINE L2 3041 3179 -93 3945 37 12 2 chr11 120387745 120388227 -30395326 + L1PA5 LINE L1 5665 6151 -3 259 298 55 50 chr11 120388682 120388863 -30394690 + L2 LINE L2 1356 1537 -1777 3664 148 23 11 chr11 120389155 120389815 -30393738 + L1MC1 LINE L1 5664 6331 -2 227 31 31 0 chr11 120389821 120389853 -30393700 + (CA)n Simple_repeat Simple_repeat 1 33 0 470 219 0 0 chr11 120390366 120390462 -30393091 - AluJo SINE Alu -14 298 203 * 745 174 53 0 chr11 120390458 120390590 -30392963 - AluJo SINE Alu -173 139 1 32 75 0 0 chr11 120390618 120390685 -30392868 + AT_rich Low_complexity Low_complexity 1 67 0 11653 179 24 15 chr11 120390801 120393160 -30390393 + L1 LINE L1 2221 4607 -1539 1975 118 27 24 chr11 120393160 120393456 -30390097 + AluSx SINE Alu 1 297 -15 11653 179 24 15 chr11 120393456 120393706 -30389847 + L1 LINE L1 4607 4853 -1293 28605 36 4 1 chr11 120393807 120399125 -30384428 - L1P LINE L1 -815 5331 3 6901 56 6 0 chr11 120399298 120400521 -30383032 - L1PA6 LINE L1 0 6154 4928 196 53 53 0 chr11 120400606 120400644 -30382909 + A-rich Low_complexity Low_complexity 4 43 0 443 290 23 8 chr11 120401331 120401462 -30382091 - MIR3 SINE MIR -43 165 33 1207 172 69 0 chr11 120401501 120401763 -30381790 - L1MA8 LINE L1 -5 6286 6007 6267 101 34 16 chr11 120401834 120402868 -30380685 - L1MA3 LINE L1 0 6305 5254 228 290 92 58 chr11 120404180 120404387 -30379166 - L2 LINE L2 -217 3055 2842 342 270 135 0 chr11 120404736 120404862 -30378691 + MIR3 SINE MIR 4 146 -62 451 262 82 59 chr11 120405314 120405523 -30378030 - MIR SINE MIR -37 225 3 255 343 93 9 chr11 120408242 120408350 -30375203 + L2 LINE L2 3007 3123 -149 507 295 81 19 chr11 120408365 120408898 -30374655 - L1ME3A LINE L1 -241 6323 5758 1044 94 0 19 chr11 120409099 120409258 -30374295 + MER4E LTR ERV1 592 747 -32 675 297 81 38 chr11 120409325 120409988 -30373565 - L1ME3A LINE L1 -1070 5470 4779 331 250 74 9 chr11 120410129 120410237 -30373316 - L2 LINE L2 0 3313 3199 229 221 122 38 chr11 120410936 120411067 -30372486 - L1ME3A LINE L1 -2191 4349 4208 1276 157 9 35 chr11 120411067 120411297 -30372256 - AluJo SINE Alu -18 294 71 813 167 0 8 chr11 120411307 120411439 -30372114 - AluJb SINE Alu -179 133 3 580 280 152 15 chr11 120411441 120412058 -30371495 - L1ME3A LINE L1 -2325 4215 3514 21 0 0 0 chr11 120412076 120412097 -30371456 + AT_rich Low_complexity Low_complexity 1 21 0 271 296 207 0 chr11 120412315 120412754 -30370799 - L1ME3A LINE L1 -3148 3392 2863 387 321 115 42 chr11 120412792 120413079 -30370474 - L1ME3A LINE L1 -3726 2814 2507 250 317 8 8 chr11 120413529 120413652 -30369901 - L1ME3A LINE L1 -4563 1977 1855 858 269 46 108 chr11 120413663 120414424 -30369129 - L1MEd LINE L1 -996 1494 685 216 0 0 0 chr11 120414428 120414452 -30369101 + (TG)n Simple_repeat Simple_repeat 1 24 0 220 267 0 0 chr11 120415732 120415807 -30367746 + T-rich Low_complexity Low_complexity 1 75 0 5223 132 26 42 chr11 120415811 120416150 -30367403 - L1PB1 LINE L1 -3 6864 6521 318 80 0 0 chr11 120416150 120416200 -30367353 + (TG)n Simple_repeat Simple_repeat 2 51 0 5223 132 26 42 chr11 120416200 120417529 -30366024 - L1PB1 LINE L1 -346 6521 5221 8976 124 54 20 chr11 120417629 120419046 -30364507 - L1PB1 LINE L1 -3410 3452 2085 266 107 27 0 chr11 120419046 120419122 -30364431 - AluY SINE Alu -21 280 246 8976 124 54 20 chr11 120419122 120420246 -30363307 - L1PB1 LINE L1 -4777 2085 636 1061 153 10 0 chr11 120420248 120420444 -30363109 - L1PB1 LINE L1 -6663 200 3 2240 84 3 0 chr11 120420460 120420767 -30362786 - AluSp SINE Alu 0 308 1 257 348 22 7 chr11 120420793 120420928 -30362625 - L1MEd LINE L1 -5453 666 530 28 0 0 0 chr11 120421066 120421094 -30362459 + AT_rich Low_complexity Low_complexity 1 28 0 1790 107 0 19 chr11 120421223 120421493 -30362060 - AluY SINE Alu -46 265 1 1252 209 94 7 chr11 120421521 120421937 -30361616 - Charlie4a DNA MER1_type -27 481 30 2384 73 0 6 chr11 120422095 120422408 -30361145 - AluY SINE Alu 0 311 1 253 352 109 0 chr11 120422550 120422678 -30360875 + L2 LINE L2 3172 3313 0 1653 185 76 34 chr11 120423908 120424290 -30359263 + MLT1C LTR MaLR 1 406 -61 4763 91 8 37 chr11 120424290 120424996 -30358557 - L1PA10 LINE L1 -1 6167 5482 1653 185 76 34 chr11 120424996 120425061 -30358492 + MLT1C LTR MaLR 406 467 0 29 28 0 0 chr11 120425226 120425262 -30358291 + AT_rich Low_complexity Low_complexity 1 36 0 330 67 0 0 chr11 120426815 120426860 -30356693 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 402 280 33 118 chr11 120426869 120427201 -30356352 - L2 LINE L2 -37 3235 2932 202 239 0 0 chr11 120427585 120427631 -30355922 + L2 LINE L2 3226 3271 -1 590 260 72 17 chr11 120429225 120429406 -30354147 - MIR SINE MIR -59 203 13 422 321 10 53 chr11 120429531 120429740 -30353813 - MIR SINE MIR -45 217 18 21 0 0 0 chr11 120429765 120429786 -30353767 + AT_rich Low_complexity Low_complexity 1 21 0 1576 110 13 9 chr11 120430028 120430256 -30353297 + MER30 DNA MER1_type 1 229 -1 231 239 283 33 chr11 120431151 120431243 -30352310 - MER5A DNA MER1_type -3 186 72 2824 7 0 0 chr11 120432038 120432343 -30351210 - AluYa5 SINE Alu -6 305 1 738 117 90 0 chr11 120434272 120434383 -30349170 - 5S rRNA rRNA 0 121 1 2180 108 0 7 chr11 120434410 120434706 -30348847 + AluSx SINE Alu 1 294 -18 260 246 118 118 chr11 120434754 120434949 -30348604 - LTR16C LTR ERVL 0 491 297 24 53 0 0 chr11 120435741 120435779 -30347774 + AT_rich Low_complexity Low_complexity 1 38 0 4426 114 38 16 chr11 120435795 120436550 -30347003 - L1MA4 LINE L1 -6 6294 5523 481 249 127 32 chr11 120437277 120437498 -30346055 + LTR33 LTR ERVL 26 267 -254 449 216 11 0 chr11 120438758 120438846 -30344707 + MER5B DNA MER1_type 1 89 -89 25 0 0 0 chr11 120439989 120440014 -30343539 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr11 120440865 120440894 -30342659 + AT_rich Low_complexity Low_complexity 1 29 0 256 348 85 0 chr11 120441477 120441618 -30341935 + L2 LINE L2 3160 3312 -1 24 32 0 0 chr11 120441995 120442026 -30341527 + AT_rich Low_complexity Low_complexity 1 31 0 298 210 6 100 chr11 120442073 120442139 -30341414 - L1ME LINE L1 -5069 1001 930 2196 93 0 32 chr11 120442139 120442450 -30341103 - AluSg SINE Alu -9 301 1 298 210 6 100 chr11 120442450 120442544 -30341009 - L1ME LINE L1 -5140 930 854 379 251 51 17 chr11 120442642 120442896 -30340657 - L1ME LINE L1 -5205 865 607 548 284 52 5 chr11 120443025 120443219 -30340334 + MER3 DNA MER1_type 2 204 -5 272 330 150 35 chr11 120443636 120443809 -30339744 + L2 LINE L2 3045 3237 -35 1368 191 30 23 chr11 120444084 120444346 -30339207 - AluJo SINE Alu -6 306 43 617 318 52 9 chr11 120444419 120444652 -30338901 - MIR SINE MIR -1 261 19 273 233 67 0 chr11 120444935 120445025 -30338528 - MER69 DNA AcHobo -248 2278 2183 995 235 105 4 chr11 120445044 120445214 -30338339 - MER69 DNA AcHobo -920 306 155 1482 202 91 14 chr11 120445214 120445576 -30337977 + MLT1B LTR MaLR 1 390 0 995 235 105 4 chr11 120445576 120445682 -30337871 - MER69 DNA AcHobo -1071 155 2 306 164 0 0 chr11 120445728 120445783 -30337770 + GA-rich Low_complexity Low_complexity 3 57 0 373 253 30 0 chr11 120446109 120446208 -30337345 + MLT1G1 LTR MaLR 2 103 -492 227 316 94 8 chr11 120446421 120446538 -30337015 - L2 LINE L2 -190 3123 2997 1060 213 38 113 chr11 120446538 120446937 -30336616 + MLT1A2 LTR MaLR 1 369 -5 239 237 52 72 chr11 120446944 120447041 -30336512 - L2 LINE L2 -325 2988 2894 297 273 190 8 chr11 120447501 120447622 -30335931 + MIR SINE MIR 1 143 -119 32 0 0 0 chr11 120448133 120448165 -30335388 + AT_rich Low_complexity Low_complexity 1 32 0 202 310 138 29 chr11 120448304 120448478 -30335075 - MIR SINE MIR -12 250 58 5037 92 12 7 chr11 120448517 120449259 -30334294 - L1MA2 LINE L1 0 7723 6978 1950 86 25 7 chr11 120449259 120449538 -30334015 + MLT2A1 LTR ERVL 4 287 -157 12928 179 47 34 chr11 120449638 120452946 -30330607 - L1MA2 LINE L1 -743 6822 3589 1016 67 36 12 chr11 120452946 120453111 -30330442 + (TTTC)n Simple_repeat Simple_repeat 4 172 0 12928 179 47 34 chr11 120453111 120453442 -30330111 - L1MA2 LINE L1 -3976 3589 3264 4676 196 29 13 chr11 120453460 120454432 -30329121 - L1MA2 LINE L1 -6558 1007 21 182 339 116 0 chr11 120454700 120454796 -30328757 - MIR SINE MIR -77 131 16 4891 80 5 5 chr11 120456972 120457601 -30325952 + SVA Other Other 752 1380 -6 2803 142 2 9 chr11 120458488 120458917 -30324636 - MSTB LTR MaLR 0 426 1 516 284 129 10 chr11 120459565 120459766 -30323787 - MIR SINE MIR -9 253 29 207 0 0 0 chr11 120460674 120460697 -30322856 + (A)n Simple_repeat Simple_repeat 1 23 0 215 208 21 0 chr11 120461027 120461075 -30322478 - L2 LINE L2 0 3313 3265 430 253 165 0 chr11 120461343 120461537 -30322016 + L1ME LINE L1 5543 5768 -353 404 172 71 6 chr11 120461677 120461846 -30321707 + (TA)n Simple_repeat Simple_repeat 1 180 0 45 45 0 0 chr11 120461925 120461991 -30321562 + AT_rich Low_complexity Low_complexity 1 66 0 268 272 104 24 chr11 120462789 120462914 -30320639 + MIR SINE MIR 110 244 -18 1565 285 71 42 chr11 120464718 120465533 -30318020 + L2 LINE L2 2415 3256 -57 2109 115 0 7 chr11 120465538 120465825 -30317728 + AluSc SINE Alu 6 290 -19 1600 110 48 15 chr11 120466458 120466731 -30316822 - L1MA4A LINE L1 -7 6296 6015 2238 125 3 0 chr11 120466792 120467096 -30316457 + AluSx SINE Alu 1 305 -7 218 330 107 65 chr11 120469237 120469546 -30314007 - L2 LINE L2 -1 3271 2950 398 291 12 84 chr11 120470770 120471012 -30312541 + MIR SINE MIR 2 228 -34 192 129 35 176 chr11 120471638 120471723 -30311830 - MIR SINE MIR -183 79 7 2050 140 6 10 chr11 120471780 120472094 -30311459 + AluSq SINE Alu 1 313 0 180 370 31 31 chr11 120472736 120472863 -30310690 - L2 LINE L2 -1 3271 3145 213 39 0 0 chr11 120473147 120473173 -30310380 + (T)n Simple_repeat Simple_repeat 1 26 0 41221 30 21 1 chr11 120473203 120479235 -30304318 - L1HS LINE L1 0 6155 1 1288 184 73 77 chr11 120479851 120480309 -30303244 - MER66A LTR ERV1 -2 476 97 752 281 104 51 chr11 120480588 120480742 -30302811 - L1MC5 LINE L1 -20 7941 7797 2095 111 4 0 chr11 120480742 120481049 -30302504 - AluY SINE Alu 0 308 1 752 281 104 51 chr11 120481049 120481402 -30302151 - L1MC5 LINE L1 -164 7797 7406 345 314 99 20 chr11 120481458 120481904 -30301649 - L1M4 LINE L1 -1637 4509 4029 6815 59 8 2 chr11 120482009 120483246 -30300307 - L1PA6 LINE L1 -13 6141 4894 6791 111 6 16 chr11 120483284 120484352 -30299201 - MER11C LTR ERVK -14 1057 1 32576 79 21 9 chr11 120484352 120489171 -30294382 - L1PA6 LINE L1 -1247 4899 27 285 290 67 21 chr11 120489179 120489417 -30294136 - L1M4 LINE L1 -2208 3938 3690 1368 166 112 0 chr11 120489732 120490027 -30293526 - MER7A DNA MER2_type -20 326 1 23 33 0 0 chr11 120490047 120490077 -30293476 + AT_rich Low_complexity Low_complexity 1 30 0 615 196 6 12 chr11 120490205 120490356 -30293197 + CT-rich Low_complexity Low_complexity 3 154 -20 1874 70 0 27 chr11 120490356 120490615 -30292938 - L1PA7 LINE L1 -15 6139 5888 615 196 6 12 chr11 120490615 120490636 -30292917 + CT-rich Low_complexity Low_complexity 154 174 0 539 222 11 31 chr11 120490652 120490931 -30292622 + CT-rich Low_complexity Low_complexity 1 273 0 227 281 56 60 chr11 120490974 120491241 -30292312 - L1M4 LINE L1 -3091 3055 2790 467 248 64 59 chr11 120491245 120491447 -30292106 - L1M4 LINE L1 -3318 2828 2626 339 65 0 0 chr11 120491922 120491968 -30291585 + (CA)n Simple_repeat Simple_repeat 2 47 0 428 318 94 33 chr11 120492012 120492585 -30290968 - HAL1b LINE L1 -525 823 216 2386 65 0 45 chr11 120494139 120494448 -30289105 - AluY SINE Alu -16 295 1 659 344 181 34 chr11 120494542 120495322 -30288231 + L2 LINE L2 1570 2234 -1038 1993 146 14 0 chr11 120495322 120495616 -30287937 - AluSx SINE Alu -14 298 1 659 344 181 34 chr11 120495616 120495898 -30287655 + L2 LINE L2 2234 2473 -799 2526 56 0 40 chr11 120495898 120496222 -30287331 - AluY SINE Alu 0 311 1 659 344 181 34 chr11 120496222 120496456 -30287097 + L2 LINE L2 2473 3064 -208 1923 143 3 7 chr11 120497166 120497460 -30286093 + AluSx SINE Alu 6 298 -14 345 307 98 0 chr11 120498898 120499061 -30284492 - L1MDa LINE L1 -1081 5459 5281 781 303 105 21 chr11 120499690 120500180 -30283373 - L1MDa LINE L1 -1299 5241 4693 2188 129 0 0 chr11 120500180 120500490 -30283063 - AluSg SINE Alu 0 310 1 781 303 105 21 chr11 120500490 120500579 -30282974 - L1MDa LINE L1 -1847 4693 4613 294 266 174 30 chr11 120500619 120500894 -30282659 - L1MDa LINE L1 -2157 4383 4067 22 35 0 0 chr11 120500957 120500986 -30282567 + AT_rich Low_complexity Low_complexity 1 29 0 643 276 22 22 chr11 120501190 120501375 -30282178 + MLT1J1 LTR MaLR 1 185 -261 237 246 72 0 chr11 120501376 120501445 -30282108 - L2 LINE L2 -31 3282 3209 5620 62 0 0 chr11 120501458 120502164 -30281389 - L1PA7 LINE L1 -1 6153 5448 3922 189 42 14 chr11 120504236 120505107 -30278446 - L1MD2 LINE L1 -4 6355 5460 6229 188 36 15 chr11 120505163 120505685 -30277868 - L1MA9 LINE L1 0 6312 5802 276 30 0 0 chr11 120505685 120505718 -30277835 + (TG)n Simple_repeat Simple_repeat 1 33 0 6229 188 36 15 chr11 120505718 120507463 -30276090 - L1MA9 LINE L1 -510 5802 4000 4483 202 31 4 chr11 120507470 120508505 -30275048 + L1MA9 LINE L1 2915 3977 -2169 1485 215 32 7 chr11 120508524 120508934 -30274619 - L1MDa LINE L1 -2958 3582 3163 180 82 41 20 chr11 120509036 120509085 -30274468 + (TA)n Simple_repeat Simple_repeat 1 50 0 1054 144 0 0 chr11 120509085 120509238 -30274315 + MSTB LTR MaLR 272 424 -2 4238 178 25 23 chr11 120509238 120510093 -30273460 + L1MA10 LINE L1 5447 6302 -32 305 268 21 21 chr11 120510366 120510463 -30273090 + GA-rich Low_complexity Low_complexity 3 99 0 1193 267 116 19 chr11 120510498 120511171 -30272382 + L1M4 LINE L1 3727 4462 -1684 4576 92 6 6 chr11 120511285 120511926 -30271627 + L1PA8 LINE L1 5529 6169 -3 501 185 143 0 chr11 120511926 120512045 -30271508 + L1MDb LINE L1 1172 1307 -5102 1420 169 9 0 chr11 120512046 120512271 -30271282 + AluJb SINE Alu 77 303 -9 2468 219 92 44 chr11 120512274 120513145 -30270408 + L1MDb LINE L1 1291 2203 -4203 535 156 11 48 chr11 120513179 120513365 -30270188 + (TA)n Simple_repeat Simple_repeat 1 179 0 271 137 20 0 chr11 120513378 120513429 -30270124 - L1MDa LINE L1 -4167 2373 2322 182 188 0 21 chr11 120513478 120513526 -30270027 + (TA)n Simple_repeat Simple_repeat 2 48 0 1315 183 43 76 chr11 120513539 120514131 -30269422 + L1MDb LINE L1 2189 2755 -3651 2064 136 3 3 chr11 120514255 120514557 -30268996 - AluSx SINE Alu -10 302 1 279 220 0 17 chr11 120514557 120514616 -30268937 - MSTB LTR MaLR -368 58 1 4710 204 34 6 chr11 120514616 120515741 -30267812 - L1M3 LINE L1 -743 5639 4537 * 6269 232 71 34 chr11 120515739 120516376 -30267177 - L1M3 LINE L1 -2050 4332 3720 2247 78 0 0 chr11 120516376 120516697 -30266856 - AluY SINE Alu 0 321 1 6269 232 71 34 chr11 120516697 120518372 -30265181 - L1M3 LINE L1 -2662 3720 1870 1952 158 3 0 chr11 120518372 120518670 -30264883 - AluSx SINE Alu -13 299 1 6269 232 71 34 chr11 120518670 120519292 -30264261 - L1M3 LINE L1 -4512 1870 1273 206 234 0 0 chr11 120519292 120519339 -30264214 + CT-rich Low_complexity Low_complexity 3 49 0 1473 250 43 50 chr11 120519413 120520297 -30263256 - L1M3c LINE L1 -4573 2464 1585 595 307 26 21 chr11 120520291 120520586 -30262967 - L1M3c LINE L1 -5827 1210 11 * 234 220 80 40 chr11 120520705 120520805 -30262748 - L1MEd LINE L1 -6010 109 6 230 254 309 40 chr11 120521716 120521842 -30261711 + L2 LINE L2 2912 3071 -201 606 329 44 25 chr11 120521892 120522144 -30261409 + MIR SINE MIR 9 262 0 270 294 59 82 chr11 120522158 120522328 -30261225 + L2 LINE L2 3107 3272 0 255 154 114 126 chr11 120523399 120523574 -30259979 + MIR3 SINE MIR 9 150 -58 235 307 33 52 chr11 120524364 120524517 -30259036 - L2 LINE L2 -182 3090 2941 309 225 113 21 chr11 120524706 120524848 -30258705 - L1ME4a LINE L1 -11 6110 5956 1538 106 0 0 chr11 120524979 120525206 -30258347 - L1MA2 LINE L1 0 6304 6078 3206 107 4 18 chr11 120525314 120525817 -30257736 - L1PB1 LINE L1 0 6867 6372 14339 185 37 17 chr11 120525822 120529435 -30254118 - L1PB1 LINE L1 -743 6119 2197 2309 98 0 0 chr11 120529435 120529731 -30253822 - AluY SINE Alu -15 296 1 14339 185 37 17 chr11 120529731 120531971 -30251582 - L1PB1 LINE L1 -4665 2197 3 6839 228 81 8 chr11 120531981 120534720 -30248833 - L1M1 LINE L1 -523 5781 2829 7262 197 86 11 chr11 120534840 120537464 -30246089 - L1PBa LINE L1 -3753 3109 129 26884 146 9 17 chr11 120537975 120543010 -30240543 - L1PA8A LINE L1 -680 5766 756 1518 243 82 50 chr11 120543024 120543621 -30239932 + L1ME3 LINE L1 5546 6161 -1 328 313 45 76 chr11 120543870 120544068 -30239485 + L2 LINE L2 14 205 -3109 432 216 99 9 chr11 120544100 120544211 -30239342 + L2 LINE L2 3127 3247 -66 396 312 126 22 chr11 120544883 120545114 -30238439 + MIR SINE MIR 8 262 0 2317 80 0 25 chr11 120545859 120546173 -30237380 - AluY SINE Alu -5 306 1 216 0 0 0 chr11 120546608 120546632 -30236921 + (TA)n Simple_repeat Simple_repeat 2 25 0 257 309 158 36 chr11 120546644 120546783 -30236770 - L3 LINE CR1 -6 1571 1416 474 219 42 0 chr11 120546793 120546912 -30236641 - L1ME2 LINE L1 0 6164 6041 430 316 25 13 chr11 120546916 120547074 -30236479 - L3 LINE CR1 -166 1411 1252 391 319 67 1 chr11 120547167 120547355 -30236198 + MIR SINE MIR 35 237 -25 308 330 40 29 chr11 120547470 120547643 -30235910 + MIR SINE MIR 3 177 -85 995 264 40 0 chr11 120548333 120548632 -30234921 + L1ME3A LINE L1 4020 4330 -1816 5492 106 30 16 chr11 120548636 120549496 -30234057 - Tigger3b DNA MER2_type -20 1211 340 517 106 10 106 chr11 120549497 120549696 -30233857 + (TA)n Simple_repeat Simple_repeat 1 180 0 448 126 33 60 chr11 120549666 120549849 -30233704 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 * 1803 256 127 13 chr11 120549968 120550733 -30232820 + L1ME3A LINE L1 5295 6146 -24 227 207 49 73 chr11 120551177 120551259 -30232294 - L1ME3A LINE L1 -86 6084 6005 264 59 0 0 chr11 120551279 120551313 -30232240 + (TA)n Simple_repeat Simple_repeat 2 35 0 23 54 0 0 chr11 120551327 120551364 -30232189 + AT_rich Low_complexity Low_complexity 1 37 0 261 243 116 42 chr11 120551642 120551831 -30231722 - L1M4 LINE L1 -1488 4658 4456 202 265 0 0 chr11 120552080 120552129 -30231424 + (CA)n Simple_repeat Simple_repeat 1 49 0 267 31 0 0 chr11 120552658 120552690 -30230863 + (TG)n Simple_repeat Simple_repeat 1 32 0 427 276 61 58 chr11 120553766 120554601 -30228952 + L1ME LINE L1 714 1590 -4671 25 31 0 0 chr11 120554849 120554881 -30228672 + AT_rich Low_complexity Low_complexity 1 32 0 5905 87 32 12 chr11 120555141 120556018 -30227535 + HERVL-A2 LTR ERVL 4761 5654 0 1508 185 117 55 chr11 120556018 120556550 -30227003 + MLT2A2 LTR ERVL 1 554 0 8980 180 33 41 chr11 120556570 120557385 -30226168 + L1MA4A LINE L1 2904 3724 -2579 1542 175 186 16 chr11 120557385 120557751 -30225802 - MSTA LTR MaLR 0 428 1 9600 151 4 25 chr11 120557751 120559364 -30224189 - MSTA-int LTR MaLR 0 1580 1 8980 180 33 41 chr11 120559364 120559403 -30224150 + L1MA4A LINE L1 3723 3761 -2542 1502 164 194 22 chr11 120559403 120559768 -30223785 - MSTA LTR MaLR 0 428 1 8980 180 33 41 chr11 120559768 120559830 -30223723 + L1MA4A LINE L1 3761 3822 -2481 2500 106 22 5 chr11 120559830 120560198 -30223355 + THE1C LTR MaLR 1 374 -1 8980 180 33 41 chr11 120560198 120562651 -30220902 + L1MA4A LINE L1 3822 6244 -59 189 0 0 0 chr11 120562779 120562800 -30220753 + (C)n Simple_repeat Simple_repeat 1 21 0 342 0 0 0 chr11 120562802 120562840 -30220713 + (T)n Simple_repeat Simple_repeat 1 38 0 213 289 77 0 chr11 120563472 120563524 -30220029 + MIR SINE MIR 92 147 -61 897 255 95 0 chr11 120563540 120563771 -30219782 - MIR SINE MIR -8 254 2 257 330 76 50 chr11 120564304 120564800 -30218753 + L2 LINE L2 2597 3148 -124 229 312 25 11 chr11 120564908 120565016 -30218537 - MIR SINE MIR -62 146 32 202 322 17 0 chr11 120565542 120565601 -30217952 + MIR SINE MIR 9 68 -194 2827 217 16 10 chr11 120565741 120566363 -30217190 - MER82 DNA MER2_type -1 652 27 804 124 103 0 chr11 120566520 120566665 -30216888 + L1MA4 LINE L1 6138 6297 -3 1971 145 3 16 chr11 120566694 120567004 -30216549 - AluSx SINE Alu -6 306 1 435 269 143 40 chr11 120567761 120567984 -30215569 + MIR SINE MIR 13 258 -4 554 280 133 9 chr11 120568388 120568607 -30214946 + MIR SINE MIR 14 250 -12 318 316 87 55 chr11 120568942 120569195 -30214358 + L1ME LINE L1 5127 5387 -759 273 342 56 0 chr11 120569263 120569424 -30214129 + L1ME LINE L1 5491 5660 -502 395 163 47 12 chr11 120571234 120571320 -30212233 + LTR67 LTR ERVL 469 557 0 378 387 58 31 chr11 120571494 120571685 -30211868 - L2 LINE L2 -17 3255 3060 442 197 94 0 chr11 120571947 120572074 -30211479 + MER112 DNA MER1_type 87 225 -35 528 294 218 39 chr11 120572272 120572641 -30210912 + L2 LINE L2 1827 2129 -1185 1146 168 53 14 chr11 120572641 120572850 -30210703 - MER20 DNA MER1_type 0 219 3 528 294 218 39 chr11 120572850 120573100 -30210453 + L2 LINE L2 2129 2557 -757 192 336 46 38 chr11 120573848 120573979 -30209574 + L2 LINE L2 3179 3310 -3 530 265 56 19 chr11 120574979 120575141 -30208412 - MIR SINE MIR -5 257 90 23 33 0 0 chr11 120575262 120575292 -30208261 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 120575349 120575378 -30208175 + AT_rich Low_complexity Low_complexity 1 29 0 5959 48 0 0 chr11 120575378 120576102 -30207451 - L1PA5 LINE L1 -6 6148 5425 12550 48 0 21 chr11 120576102 120577631 -30205922 + L1P LINE L1 3717 5206 -940 2807 16 0 0 chr11 120577631 120577940 -30205613 - AluYb8 SINE Alu -9 309 1 12550 48 0 21 chr11 120577940 120578134 -30205419 + L1P LINE L1 5206 5403 -743 1780 180 0 10 chr11 120578241 120578535 -30205018 + AluJo SINE Alu 1 291 -21 2011 131 60 26 chr11 120578856 120579208 -30204345 + THE1B LTR MaLR 1 364 0 261 374 99 48 chr11 120579478 120579871 -30203682 - L2 LINE L2 -33 3239 2827 1001 220 68 29 chr11 120579965 120580314 -30203239 + MSTD LTR MaLR 1 396 0 270 302 126 6 chr11 120580318 120580477 -30203076 - L2 LINE L2 -588 2726 2549 1690 354 58 27 chr11 120580558 120581942 -30201611 + ERVL LTR ERVL 3718 5144 -620 309 262 24 0 chr11 120581981 120582107 -30201446 + ERVL LTR ERVL 5162 5290 -364 521 277 57 44 chr11 120582294 120582646 -30200907 + LTR16A1 LTR ERVL 19 429 -28 318 67 0 0 chr11 120582871 120582916 -30200637 + (A)n Simple_repeat Simple_repeat 1 45 0 1094 235 11 8 chr11 120582963 120583223 -30200330 + MLT1C LTR MaLR 206 466 -1 230 342 0 0 chr11 120584985 120585064 -30198489 + LTR67 LTR ERVL 3 81 -476 245 51 26 0 chr11 120585081 120585120 -30198433 + (TC)n Simple_repeat Simple_repeat 2 41 0 461 256 23 45 chr11 120585359 120585535 -30198018 + LTR67 LTR ERVL 354 525 -32 234 0 0 0 chr11 120585563 120585589 -30197964 + (TG)n Simple_repeat Simple_repeat 2 27 0 256 197 28 14 chr11 120585869 120585940 -30197613 + (TA)n Simple_repeat Simple_repeat 2 73 0 1653 219 22 14 chr11 120587162 120587532 -30196021 + MLT1A2 LTR MaLR 1 373 -1 2170 209 19 86 chr11 120588351 120589024 -30194529 + MER92B LTR ERV1 1 628 -8 1591 181 0 0 chr11 120589067 120589316 -30194237 - AluJo SINE Alu -63 249 1 183 333 153 0 chr11 120589435 120589507 -30194046 - MIR3 SINE MIR -10 198 116 3174 57 2 0 chr11 120589550 120589953 -30193600 - L1PA8 LINE L1 -5 6167 5764 245 61 0 0 chr11 120589985 120590018 -30193535 + L1P LINE L1 4904 4936 -1210 1151 249 171 12 chr11 120590018 120590159 -30193394 - MLT1H LTR MaLR 0 549 432 276 30 0 0 chr11 120590159 120590192 -30193361 + (TG)n Simple_repeat Simple_repeat 1 33 0 1151 249 171 12 chr11 120590192 120590459 -30193094 - MLT1H LTR MaLR -117 432 76 215 315 0 19 chr11 120590498 120590552 -30193001 - MIR SINE MIR -96 112 60 528 408 11 0 chr11 120590711 120590885 -30192668 + MER91A DNA MER1_type 1 176 -20 294 265 154 7 chr11 120591625 120591761 -30191792 - MER103 DNA DNA -7 159 4 199 307 55 94 chr11 120591887 120592014 -30191539 + MIR SINE MIR 30 151 -57 273 284 78 20 chr11 120592618 120592720 -30190833 + L2 LINE L2 3161 3268 -4 2111 124 52 22 chr11 120592806 120593170 -30190383 + THE1C LTR MaLR 1 375 0 366 303 72 20 chr11 120593178 120593330 -30190223 - MER117 DNA MER1_type -32 165 6 294 329 88 29 chr11 120593335 120593472 -30190081 - MIR3 SINE MIR -48 160 16 188 256 0 0 chr11 120593586 120593625 -30189928 + L2 LINE L2 3265 3303 -10 213 65 0 0 chr11 120594981 120595012 -30188541 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 264 233 110 0 chr11 120597331 120597404 -30186149 - MIR SINE MIR -125 137 57 204 354 146 13 chr11 120598078 120598236 -30185317 + L2 LINE L2 2596 2774 -540 393 243 65 9 chr11 120598260 120598367 -30185186 - MER94 DNA DNA 0 134 22 22 35 0 0 chr11 120599196 120599225 -30184328 + AT_rich Low_complexity Low_complexity 1 29 0 2361 88 0 0 chr11 120599448 120599756 -30183797 - AluY SINE Alu -3 308 1 582 340 81 40 chr11 120599756 120600274 -30183279 + LTR67 LTR ERVL 4 542 -15 839 347 86 16 chr11 120600420 120600888 -30182665 + L2 LINE L2 2503 2991 -281 523 274 117 32 chr11 120600900 120601148 -30182405 - MLT1J2 LTR MaLR 0 450 182 252 0 0 0 chr11 120601177 120601205 -30182348 + (CA)n Simple_repeat Simple_repeat 2 29 0 520 287 47 74 chr11 120601423 120601681 -30181872 + MIR SINE MIR 5 255 -7 627 198 0 0 chr11 120601773 120601894 -30181659 - MER63A DNA MER1_type -29 181 61 285 258 0 0 chr11 120601983 120602045 -30181508 + L2 LINE L2 3250 3311 -2 770 100 0 0 chr11 120602324 120602434 -30181119 + L1MA2 LINE L1 5819 5928 -376 1010 101 85 5 chr11 120602557 120602745 -30180808 + L1MA2 LINE L1 5935 6137 -167 243 280 0 0 chr11 120603264 120603314 -30180239 + polypyrimidine Low_complexity Low_complexity 4 53 0 210 241 108 24 chr11 120603634 120603717 -30179836 + L2 LINE L2 3217 3306 -7 584 254 16 65 chr11 120603807 120603992 -30179561 - MIR3 SINE MIR -30 178 3 202 322 17 0 chr11 120604505 120604564 -30178989 + MIR SINE MIR 9 68 -194 2616 227 18 11 chr11 120604704 120605326 -30178227 - MER82 DNA MER2_type -1 652 27 804 124 103 0 chr11 120605483 120605628 -30177925 + L1MA4 LINE L1 6138 6297 -3 2044 145 3 0 chr11 120605657 120605961 -30177592 - AluSx SINE Alu -7 305 1 1558 211 25 0 chr11 120605964 120606248 -30177305 - AluJo SINE Alu -15 297 7 749 138 0 41 chr11 120606289 120606412 -30177141 - FLAM_C SINE Alu -15 118 1 206 118 0 29 chr11 120606800 120606834 -30176719 + (GAA)n Simple_repeat Simple_repeat 2 34 0 361 346 43 16 chr11 120607085 120607273 -30176280 - MIR SINE MIR -52 210 18 2906 219 85 4 chr11 120607274 120608171 -30175382 - L1MC4a LINE L1 -3 7805 6904 351 289 44 7 chr11 120608385 120608520 -30175033 - L1MD3 LINE L1 -1122 6873 6734 303 299 0 65 chr11 120608523 120608630 -30174923 - L1MEc LINE L1 -4759 2066 1967 333 250 16 55 chr11 120608634 120608762 -30174791 - L1MEc LINE L1 -4895 1751 1629 306 380 70 26 chr11 120609038 120609267 -30174286 - L1MEc LINE L1 -6295 247 9 205 75 50 0 chr11 120609385 120609425 -30174128 + (CAA)n Simple_repeat Simple_repeat 2 43 0 410 304 138 31 chr11 120609567 120609856 -30173697 - L1MEc LINE L1 -5970 426 107 673 278 38 19 chr11 120610822 120611031 -30172522 + MIR SINE MIR 14 226 -36 288 210 42 108 chr11 120611758 120611925 -30171628 - L1ME4a LINE L1 -2 6119 5964 566 280 130 68 chr11 120611947 120612415 -30171138 + MLT1L LTR MaLR 1 497 -118 189 0 0 0 chr11 120612518 120612539 -30171014 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 430 234 126 112 chr11 120613454 120613732 -30169821 + L1ME4a LINE L1 4915 5196 -950 1282 117 24 10 chr11 120613736 120613941 -30169612 - L1PA16 LINE L1 -281 5884 5677 1506 147 70 0 chr11 120613941 120614200 -30169353 + L1PA16 LINE L1 5881 6157 -9 1270 314 31 2 chr11 120614244 120614665 -30168888 + LTR16A LTR ERVL 18 450 0 821 277 12 64 chr11 120614764 120614952 -30168601 + L1ME4a LINE L1 5302 5458 -712 4537 60 2 2 chr11 120614952 120615532 -30168021 + L1PA7 LINE L1 5567 6146 -8 821 277 12 64 chr11 120615532 120615742 -30167811 + L1ME4a LINE L1 5458 5678 -492 307 308 154 0 chr11 120616238 120616381 -30167172 + MIR SINE MIR 92 256 -6 194 300 171 29 chr11 120616814 120616954 -30166599 - L3 LINE CR1 -615 962 803 201 307 9 18 chr11 120617130 120617244 -30166309 + CT-rich Low_complexity Low_complexity 2 114 0 203 137 0 39 chr11 120617247 120617298 -30166255 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 22 35 0 0 chr11 120617669 120617698 -30165855 + AT_rich Low_complexity Low_complexity 1 29 0 1084 188 86 0 chr11 120617759 120618014 -30165539 - L1MA6 LINE L1 0 6300 6024 2122 56 0 35 chr11 120618439 120618753 -30164800 - AluY SINE Alu 0 310 7 22 35 0 0 chr11 120618758 120618787 -30164766 + AT_rich Low_complexity Low_complexity 1 29 0 225 156 0 44 chr11 120618841 120618886 -30164667 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 233 254 14 56 chr11 120618905 120618976 -30164577 - L2 LINE L2 -48 3224 3157 698 202 77 12 chr11 120618981 120619149 -30164404 + MLT1C LTR MaLR 6 184 -283 1839 83 0 80 chr11 120619149 120619487 -30164066 + AluY SINE Alu 1 311 0 363 270 97 89 chr11 120619842 120620079 -30163474 + L1ME4a LINE L1 5834 6072 -49 533 296 88 44 chr11 120620233 120620595 -30162958 - L1MEd LINE L1 -5378 741 364 392 274 59 7 chr11 120620881 120621034 -30162519 - L1MEd LINE L1 -5925 194 34 270 273 121 0 chr11 120621102 120621168 -30162385 - MIR SINE MIR -157 105 32 259 287 103 59 chr11 120621219 120621355 -30162198 + MIR3 SINE MIR 4 145 -63 366 322 94 20 chr11 120622931 120623133 -30160420 - MIR SINE MIR -44 218 2 186 43 0 0 chr11 120623183 120623206 -30160347 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 502 303 53 33 chr11 120623258 120623410 -30160143 + L2 LINE L2 3118 3272 0 1528 179 7 14 chr11 120624529 120624825 -30158728 - L1PB4 LINE L1 -7 6149 5856 988 109 0 0 chr11 120625492 120625620 -30157933 + AluSq/x SINE Alu 5 132 -180 912 120 0 15 chr11 120625728 120625861 -30157692 - AluSq/x SINE Alu -181 131 1 424 314 103 6 chr11 120626250 120626406 -30157147 + MIR SINE MIR 20 190 -72 356 335 108 10 chr11 120627950 120628153 -30155400 - MIR SINE MIR -12 250 28 324 282 133 37 chr11 120628354 120628542 -30155011 + MIR SINE MIR 7 212 -50 359 89 18 0 chr11 120629203 120629259 -30154294 + (TG)n Simple_repeat Simple_repeat 2 58 0 1110 282 68 54 chr11 120629464 120629947 -30153606 + LTR16C LTR ERVL 2 491 0 216 0 0 0 chr11 120630410 120630434 -30153119 + (GA)n Simple_repeat Simple_repeat 1 24 0 232 319 53 9 chr11 120631063 120631176 -30152377 + LTR16C LTR ERVL 197 314 -177 2037 124 10 0 chr11 120632075 120632366 -30151187 + AluSx SINE Alu 1 294 -18 689 139 28 56 chr11 120632949 120633093 -30150460 + MER20 DNA MER1_type 1 140 -79 1885 220 48 54 chr11 120633096 120633636 -30149917 - MLT1E2 LTR MaLR -4 622 86 1125 174 0 37 chr11 120633652 120633870 -30149683 + AluJo SINE Alu 85 294 -18 396 198 0 0 chr11 120633964 120634050 -30149503 + MER20 DNA MER1_type 134 219 0 390 248 77 17 chr11 120634408 120634525 -30149028 + L2 LINE L2 3190 3313 0 715 215 21 0 chr11 120634546 120634732 -30148821 - Charlie2a DNA MER1_type -1191 1671 1482 733 272 105 8 chr11 120634884 120635141 -30148412 - Charlie2a DNA MER1_type -2580 282 1 444 328 48 48 chr11 120635155 120635487 -30148066 - L3 LINE CR1 -179 1398 1067 253 303 0 0 chr11 120635603 120635669 -30147884 - MIR SINE MIR -111 151 86 186 167 83 0 chr11 120636294 120636330 -30147223 + L2 LINE L2 3234 3272 0 213 227 113 62 chr11 120636361 120636458 -30147095 + MIR SINE MIR 161 262 0 2071 115 42 0 chr11 120637316 120637479 -30146074 - AluSq SINE Alu -15 298 116 429 36 0 0 chr11 120637479 120637534 -30146019 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2071 115 42 0 chr11 120637534 120637656 -30145897 - AluSq SINE Alu -197 116 1 27 29 0 0 chr11 120637695 120637729 -30145824 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr11 120637894 120637919 -30145634 + AT_rich Low_complexity Low_complexity 1 25 0 8119 22 5 1 chr11 120638883 120640405 -30143148 + L1PA3 LINE L1 4347 5876 -279 22 35 0 0 chr11 120641560 120641589 -30141964 + AT_rich Low_complexity Low_complexity 1 29 0 2203 129 0 0 chr11 120641941 120642250 -30141303 + AluSc SINE Alu 1 309 0 767 260 35 30 chr11 120642764 120642828 -30140725 - MIR SINE MIR 0 262 200 13817 134 45 14 chr11 120642828 120643486 -30140067 + Tigger1 DNA MER2_type 1 637 -1781 2801 10 0 0 chr11 120643486 120643794 -30139759 - AluY SINE Alu -3 308 1 13817 134 45 14 chr11 120643794 120644042 -30139511 + Tigger1 DNA MER2_type 637 876 -1542 2113 113 0 3 chr11 120644042 120644366 -30139187 - AluSx SINE Alu 0 323 1 13817 134 45 14 chr11 120644366 120645801 -30137752 + Tigger1 DNA MER2_type 876 2418 0 767 260 35 30 chr11 120645801 120645967 -30137586 - MIR SINE MIR -62 200 31 836 230 96 17 chr11 120646236 120646527 -30137026 - L1ME3A LINE L1 -166 6284 5971 5909 172 38 29 chr11 120646545 120648976 -30134577 - L1MA4A LINE L1 -1 6302 3851 221 323 95 17 chr11 120648994 120649124 -30134429 + MIR SINE MIR 8 145 -63 449 193 59 15 chr11 120650248 120650383 -30133170 + L1M4 LINE L1 5059 5199 -947 * 1247 249 30 0 chr11 120650377 120650746 -30132807 - L1ME3A LINE L1 -462 5982 5603 5688 250 44 17 chr11 120650878 120653446 -30130107 - L1ME LINE L1 -1489 4937 2331 230 288 181 9 chr11 120653471 120653697 -30129856 - L1ME LINE L1 -4385 2222 1958 530 322 90 47 chr11 120653710 120654260 -30129293 - L1ME LINE L1 -5122 1294 792 26 30 0 0 chr11 120654588 120654621 -30128932 + AT_rich Low_complexity Low_complexity 1 33 0 21289 89 15 8 chr11 120654673 120657697 -30125856 - L1PA7 LINE L1 0 6154 3086 1631 97 0 5 chr11 120657697 120657913 -30125640 - AluSc SINE Alu -13 296 82 21289 89 15 8 chr11 120657913 120658756 -30124797 - L1PA7 LINE L1 -3068 3086 2251 2718 131 32 36 chr11 120658771 120659245 -30124308 + MER4E LTR ERV1 5 476 -303 415 77 15 0 chr11 120659270 120659335 -30124218 + LTR19A LTR ERV1 421 486 0 2289 232 52 15 chr11 120659340 120659493 -30124060 - L1MCb LINE L1 -4851 1194 1048 225 0 0 0 chr11 120659493 120659518 -30124035 + (GTTTG)n Simple_repeat Simple_repeat 5 29 0 2289 232 52 15 chr11 120659518 120660198 -30123355 - L1MCb LINE L1 -4997 1048 837 1264 169 55 0 chr11 120660201 120660437 -30123116 - L1MC/D LINE L1 -604 5755 5507 * 4151 244 39 78 chr11 120660430 120662322 -30121231 - L1MC4a LINE L1 -774 6167 5818 528 296 72 53 chr11 120662444 120663117 -30120436 - L1MCc LINE L1 -4785 2156 1456 7696 92 3 13 chr11 120663117 120665012 -30118541 - L1PA7 LINE L1 -11 6143 4261 528 296 72 53 chr11 120665012 120665117 -30118436 - L1MCc LINE L1 -5485 1456 1354 376 303 62 76 chr11 120665521 120665954 -30117599 - L1MCc LINE L1 -5958 465 39 3183 162 33 21 chr11 120666185 120666758 -30116795 - MER6A DNA MER2_type 0 605 26 196 344 52 0 chr11 120667233 120667329 -30116224 + L2 LINE L2 3165 3265 -48 338 408 0 8 chr11 120667329 120667454 -30116099 + MER91A DNA MER1_type 1 124 -72 246 154 0 0 chr11 120667562 120667601 -30115952 + L2 LINE L2 3258 3296 -17 284 347 155 20 chr11 120668507 120668758 -30114795 + L2 LINE L2 2592 2876 -438 3366 102 20 0 chr11 120668984 120669475 -30114078 - L1PA14 LINE L1 0 6161 5661 405 343 56 7 chr11 120669511 120669654 -30113899 + L2 LINE L2 3121 3270 -2 201 297 62 16 chr11 120669690 120669754 -30113799 - L2 LINE L2 -605 2709 2643 387 0 0 0 chr11 120669916 120669959 -30113594 + (CA)n Simple_repeat Simple_repeat 2 44 0 361 319 9 18 chr11 120669998 120670111 -30113442 - L2 LINE L2 -1 3271 3160 575 279 122 20 chr11 120671453 120671707 -30111846 + L2 LINE L2 3029 3308 -5 788 228 62 75 chr11 120671968 120672341 -30111212 + L1M4 LINE L1 2125 2492 -3654 2100 252 62 75 chr11 120672366 120673305 -30110248 - L1ME LINE L1 -4810 1270 321 1891 152 0 23 chr11 120673305 120673614 -30109939 - AluJb SINE Alu -10 302 1 2100 252 62 75 chr11 120673614 120673931 -30109622 - L1ME LINE L1 -5759 321 2 1851 155 0 36 chr11 120674031 120674335 -30109218 + AluSx SINE Alu 1 293 -19 21934 30 1 0 chr11 120675032 120678442 -30105111 - L1PA4 LINE L1 0 6155 2748 192 336 122 0 chr11 120678523 120678654 -30104899 + L2 LINE L2 3126 3272 0 185 325 50 12 chr11 120678710 120678790 -30104763 + MIR3 SINE MIR 108 190 -18 569 80 0 0 chr11 120678969 120679068 -30104485 - AluY SINE Alu 0 307 209 271 345 21 62 chr11 120680368 120680513 -30103040 + MER5A DNA MER1_type 17 155 -34 2199 55 4 15 chr11 120680930 120681203 -30102350 - AluY SINE Alu -26 285 16 317 233 46 10 chr11 120681551 120681690 -30101863 - L1ME1 LINE L1 -303 5863 5722 254 206 14 0 chr11 120681705 120681778 -30101775 + (TA)n Simple_repeat Simple_repeat 2 75 0 321 259 59 0 chr11 120681778 120681863 -30101690 + L1MC4 LINE L1 6614 6703 -1339 489 230 20 117 chr11 120681897 120682093 -30101460 - MER5B DNA MER1_type 0 178 2 585 236 152 6 chr11 120682099 120682264 -30101289 + MER5A DNA MER1_type 1 189 0 11921 186 55 32 chr11 120682469 120685725 -30097828 - L1MA10 LINE L1 -1 6569 3391 2434 102 8 8 chr11 120685725 120686078 -30097475 - THE1A LTR MaLR 0 355 3 11921 186 55 32 chr11 120686078 120686189 -30097364 - L1MA10 LINE L1 -3179 3391 3284 1197 152 16 53 chr11 120686189 120686433 -30097120 + MER46A DNA MER2_type 1 235 -1 11921 186 55 32 chr11 120686433 120686738 -30096815 - L1MA10 LINE L1 -3286 3284 2988 2213 127 0 3 chr11 120686738 120687045 -30096508 - AluSx SINE Alu -6 306 1 11921 186 55 32 chr11 120687045 120687107 -30096446 - L1MA10 LINE L1 -3582 2988 2929 486 0 0 0 chr11 120687107 120687161 -30096392 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 11921 186 55 32 chr11 120687161 120687641 -30095912 - L1MA10 LINE L1 -3641 2929 2244 748 167 0 15 chr11 120687693 120687825 -30095728 - FLAM_C SINE Alu -11 132 3 373 286 25 35 chr11 120687967 120688170 -30095383 - L1 LINE L1 -1316 4830 4630 380 245 145 28 chr11 120688239 120688529 -30095024 - L1 LINE L1 -1720 4426 4103 2555 36 10 0 chr11 120688800 120689101 -30094452 - AluY SINE Alu -7 304 1 228 239 0 0 chr11 120689207 120689253 -30094300 - L2 LINE L2 0 3272 3227 190 403 0 15 chr11 120689628 120689695 -30093858 + L2 LINE L2 3115 3180 -92 748 197 263 13 chr11 120691262 120691490 -30092063 - MLT1J1 LTR MaLR -161 285 1 809 211 4 110 chr11 120692240 120692477 -30091076 - MER20 DNA MER1_type -1 218 7 1103 123 27 27 chr11 120692773 120692960 -30090593 + L1PA16 LINE L1 5980 6166 0 394 292 0 66 chr11 120693161 120693298 -30090255 - MIR SINE MIR -115 147 20 2097 129 20 0 chr11 120693304 120693607 -30089946 - AluSx SINE Alu -3 309 1 5781 136 22 3 chr11 120694265 120695179 -30088374 + L1MC1 LINE L1 5384 6314 -19 355 302 141 33 chr11 120695386 120695628 -30087925 + MLT1I LTR MaLR 19 286 -123 506 16 16 0 chr11 120696363 120696426 -30087127 + (CA)n Simple_repeat Simple_repeat 1 64 0 1346 264 63 55 chr11 120696448 120696791 -30086762 + HAL1 LINE L1 887 1226 -1281 2555 52 0 16 chr11 120696791 120697101 -30086452 - AluY SINE Alu -6 305 1 1346 264 63 55 chr11 120697101 120697484 -30086069 + HAL1 LINE L1 1226 1619 -888 248 239 120 0 chr11 120697505 120697597 -30085956 + L1M4 LINE L1 4745 4847 -1299 310 218 0 0 chr11 120697603 120697658 -30085895 + L2 LINE L2 3252 3306 -7 541 283 95 22 chr11 120697700 120698067 -30085486 + L1M4 LINE L1 4876 5269 -877 * 4897 140 34 9 chr11 120698062 120698955 -30084598 + L1MA6 LINE L1 4510 5422 -807 2153 125 3 19 chr11 120698955 120699268 -30084285 + AluSx SINE Alu 1 308 -4 4897 140 34 9 chr11 120699268 120699333 -30084220 + L1MA6 LINE L1 5422 5484 -745 536 193 34 17 chr11 120699338 120699457 -30084096 + L1PB4 LINE L1 6034 6154 -2 3631 170 47 26 chr11 120699457 120700263 -30083290 + L1MA6 LINE L1 5476 6300 0 3677 170 41 20 chr11 120703347 120703441 -30080112 - MER44D DNA MER2_type -1882 705 614 219 114 0 0 chr11 120703441 120703476 -30080077 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2092 124 0 0 chr11 120703478 120703761 -30079792 - AluSx SINE Alu -29 283 1 3677 170 41 20 chr11 120703761 120704353 -30079200 - MER44D DNA MER2_type -1973 614 2 372 295 116 0 chr11 120704493 120704622 -30078931 + MIR SINE MIR 1 144 -118 264 277 84 25 chr11 120704672 120704791 -30078762 - L1MEd LINE L1 -5358 761 636 6368 88 14 4 chr11 120705227 120707032 -30076521 - L1PA11 LINE L1 0 6174 4346 234 62 0 0 chr11 120707121 120707153 -30076400 + (T)n Simple_repeat Simple_repeat 1 32 0 384 236 133 67 chr11 120708284 120708449 -30075104 - MER69A DNA AcHobo -1 176 1 31 82 0 0 chr11 120708537 120708610 -30074943 + AT_rich Low_complexity Low_complexity 1 73 0 973 308 54 29 chr11 120708883 120709419 -30074134 + L2 LINE L2 2460 3002 -270 280 229 119 9 chr11 120709502 120709611 -30073942 + L1ME4a LINE L1 5987 6107 -14 26 0 0 0 chr11 120709884 120709910 -30073643 + AT_rich Low_complexity Low_complexity 1 26 0 833 308 246 19 chr11 120710117 120710792 -30072761 - L3 LINE CR1 -103 1474 647 229 106 21 21 chr11 120710853 120710900 -30072653 + (TA)n Simple_repeat Simple_repeat 1 47 0 482 265 61 14 chr11 120711173 120711320 -30072233 - L2 LINE L2 0 3313 3160 2289 151 70 89 chr11 120712100 120712630 -30070923 - MLT2B1 LTR ERVL 0 520 1 23 0 0 0 chr11 120713780 120713803 -30069750 + AT_rich Low_complexity Low_complexity 1 23 0 219 36 0 0 chr11 120713953 120713981 -30069572 + (A)n Simple_repeat Simple_repeat 1 28 0 239 358 57 32 chr11 120714486 120714609 -30068944 - L2 LINE L2 -2 3270 3145 495 330 184 15 chr11 120714671 120715062 -30068491 + L2 LINE L2 2815 3271 -1 326 280 161 0 chr11 120715486 120715604 -30067949 + MIR3 SINE MIR 32 168 -40 1451 183 27 10 chr11 120715760 120716055 -30067498 + AluJo SINE Alu 11 310 -2 402 115 0 0 chr11 120716067 120716128 -30067425 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 787 52 0 0 chr11 120716901 120716998 -30066555 + L1PA5 LINE L1 6052 6148 -6 180 0 0 0 chr11 120717012 120717032 -30066521 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 687 224 0 29 chr11 120717253 120717458 -30066095 + L1MC4 LINE L1 6885 7083 -959 768 270 76 35 chr11 120717750 120718120 -30065433 + L1MC4 LINE L1 7152 7536 -506 696 255 10 5 chr11 120718226 120718434 -30065119 - L1M4 LINE L1 -816 5330 5122 1792 149 39 3 chr11 120718480 120718789 -30064764 + Tigger3(Golem) DNA MER2_type 4 323 -2706 28 29 0 0 chr11 120718789 120718824 -30064729 + AT_rich Low_complexity Low_complexity 1 35 0 501 137 37 64 chr11 120718844 120719545 -30064008 + (TA)n Simple_repeat Simple_repeat 1 681 0 1700 262 109 35 chr11 120719667 120720677 -30062876 - L1M4 LINE L1 -904 5242 4158 451 234 15 22 chr11 120720699 120720836 -30062717 - L1MEc LINE L1 -4634 1762 1627 409 182 11 11 chr11 120720832 120720920 -30062633 - L1ME3A LINE L1 0 6170 6083 * 637 250 91 6 chr11 120720948 120721375 -30062178 - L1ME3A LINE L1 -173 5997 5500 252 312 72 7 chr11 120721684 120721822 -30061731 + L1ME4a LINE L1 5974 6120 -1 363 293 7 107 chr11 120722849 120722999 -30060554 - MIR SINE MIR -108 154 20 364 317 57 0 chr11 120723880 120724003 -30059550 - L3 LINE CR1 -150 1427 1298 741 119 17 8 chr11 120724390 120724508 -30059045 - AluSg/x SINE Alu -16 296 178 2795 90 2 18 chr11 120726647 120727046 -30056507 + THE1C-int LTR MaLR 1181 1573 -7 1737 134 84 39 chr11 120727054 120727411 -30056142 + THE1C LTR MaLR 3 375 0 1281 160 9 14 chr11 120730218 120730437 -30053116 - MER20 DNA MER1_type 0 219 2 511 322 46 0 chr11 120730721 120730873 -30052680 + LTR16A LTR ERVL 52 210 -240 799 222 145 0 chr11 120731708 120731915 -30051638 - LTR16A LTR ERVL 0 450 214 1139 8 0 0 chr11 120732958 120733085 -30050468 - L1P2 LINE L1 -418 5736 5610 791 21 0 0 chr11 120733085 120733180 -30050373 + L1PA4 LINE L1 6060 6155 0 23 33 0 0 chr11 120734308 120734338 -30049215 + AT_rich Low_complexity Low_complexity 1 30 0 481 250 115 45 chr11 120735191 120735391 -30048162 + MLT1J1 LTR MaLR 21 234 -212 556 196 14 8 chr11 120735398 120735518 -30048035 + MLT1J2 LTR MaLR 284 450 0 401 290 80 53 chr11 120735525 120735787 -30047766 - L1MC4a LINE L1 -1857 5951 5683 265 205 214 34 chr11 120736051 120736168 -30047385 + MER103 DNA DNA 25 162 -4 921 173 13 0 chr11 120736411 120736561 -30046992 + MER2 DNA MER2_type 1 152 -193 1000 250 74 80 chr11 120736776 120737300 -30046253 + LTR33A LTR ERVL 1 521 -2 2135 144 8 29 chr11 120737634 120738017 -30045536 + THE1C LTR MaLR 1 375 0 714 286 17 35 chr11 120738032 120738263 -30045290 + MIR SINE MIR 36 262 0 556 250 168 51 chr11 120738632 120738924 -30044629 + MLT1I LTR MaLR 74 399 -10 186 214 0 24 chr11 120739323 120739365 -30044188 - L2 LINE L2 -291 2981 2941 2897 228 19 17 chr11 120739380 120740104 -30043449 + L1M4 LINE L1 3530 4255 -1891 247 272 76 72 chr11 120740090 120740509 -30043044 + L1M4 LINE L1 4978 5398 -748 * 750 239 55 55 chr11 120741478 120742056 -30041497 + L1M4 LINE L1 2760 3337 -2809 28 29 0 0 chr11 120744155 120744190 -30039363 + AT_rich Low_complexity Low_complexity 1 35 0 844 260 143 11 chr11 120750682 120750955 -30032598 - L2 LINE L2 -1 3312 3004 190 328 0 16 chr11 120750996 120751057 -30032496 - MIR3 SINE MIR -28 180 121 355 340 129 24 chr11 120751236 120751794 -30031759 - L2 LINE L2 -182 3090 2471 457 209 22 0 chr11 120752412 120752503 -30031050 + MIR SINE MIR 34 126 -136 250 250 36 0 chr11 120752693 120752749 -30030804 + L2 LINE L2 3215 3272 0 530 293 71 6 chr11 120754864 120755044 -30028509 - MIR SINE MIR -63 145 1 375 336 61 15 chr11 120755261 120755392 -30028161 + MER5A DNA MER1_type 53 189 0 351 295 79 16 chr11 120756155 120756345 -30027208 - MIR SINE MIR -48 214 15 754 235 149 32 chr11 120756614 120756835 -30026718 + MIR SINE MIR 7 253 -9 783 268 98 9 chr11 120756973 120757197 -30026356 + MIR SINE MIR 13 256 -6 390 299 90 8 chr11 120757768 120757902 -30025651 + MIR SINE MIR 20 164 -98 525 360 16 12 chr11 120758012 120758254 -30025299 - MIR SINE MIR 0 262 20 502 313 62 5 chr11 120759578 120759789 -30023764 + LTR16C LTR ERVL 79 301 -190 2197 116 3 19 chr11 120759908 120760218 -30023335 - AluSx SINE Alu -7 305 1 772 309 11 30 chr11 120760529 120760794 -30022759 + MIR SINE MIR 3 262 0 861 247 110 65 chr11 120760979 120761396 -30022157 - LTR16A1 LTR ERVL 0 457 22 309 291 67 78 chr11 120761931 120762181 -30021372 + MIR SINE MIR 1 236 -26 6940 55 11 0 chr11 120762510 120763475 -30020078 + L1PA6 LINE L1 5177 6151 -3 414 225 56 0 chr11 120764228 120764317 -30019236 + MER5A DNA MER1_type 9 102 -87 27126 32 1 0 chr11 120764328 120767790 -30015763 + L1P LINE L1 1896 5361 -785 2486 178 104 2 chr11 120768302 120768886 -30014667 - MER63C DNA MER1_type -37 893 250 3268 130 6 9 chr11 120768886 120769431 -30014122 + L1MA8 LINE L1 5619 6161 -130 671 211 72 0 chr11 120769443 120769637 -30013916 - MER63C DNA MER1_type -665 265 58 299 211 0 14 chr11 120769704 120769775 -30013778 - MER63C DNA MER1_type -859 71 2 185 65 32 0 chr11 120769870 120769901 -30013652 + (GA)n Simple_repeat Simple_repeat 1 32 0 400 188 239 7 chr11 120770104 120770242 -30013311 - LTR67 LTR ERVL 0 557 388 364 376 77 24 chr11 120770556 120770854 -30012699 - L2 LINE L2 -4 3268 2955 22 0 0 0 chr11 120771265 120771287 -30012266 + GC_rich Low_complexity Low_complexity 1 22 0 4187 189 94 97 chr11 120771350 120772479 -30011074 + L1MA3 LINE L1 1105 2229 -5336 12399 172 34 33 chr11 120772486 120772963 -30010590 + L1MA3 LINE L1 3706 4181 -3403 1885 81 45 4 chr11 120772963 120773210 -30010343 + AluSc SINE Alu 5 261 -48 12399 172 34 33 chr11 120773210 120776623 -30006930 + L1MA3 LINE L1 4181 7577 -7 809 153 34 6 chr11 120776618 120776795 -30006758 + L1MA1 LINE L1 5936 6117 -185 * 27917 74 7 1 chr11 120776914 120780625 -30002928 - HERVL LTR ERVL -454 5200 1467 4870 148 46 16 chr11 120780729 120781764 -30001789 - L1PA15 LINE L1 -41 6124 5056 1420 198 13 6 chr11 120781761 120782075 -30001478 + L1PA15 LINE L1 4737 5052 -1094 * 2267 259 74 44 chr11 120782095 120782862 -30000691 + L2 LINE L2 1336 2125 -1189 243 218 0 0 chr11 120784189 120784244 -29999309 + (TA)n Simple_repeat Simple_repeat 1 55 0 377 257 90 7 chr11 120784600 120784744 -29998809 + Charlie8 DNA MER1_type 24 179 -2238 712 220 102 0 chr11 120784752 120784938 -29998615 + MER63A DNA MER1_type 6 210 0 1520 180 37 39 chr11 120785441 120785796 -29997757 - MLT1A1 LTR MaLR -2 363 10 404 333 25 0 chr11 120785981 120786101 -29997452 - MER91C DNA MER1_type 0 140 18 2643 166 94 4 chr11 120786108 120786621 -29996932 - MER89 LTR ERV1 0 559 1 222 288 0 0 chr11 120787107 120787180 -29996373 + A-rich Low_complexity Low_complexity 2 74 0 437 128 218 0 chr11 120788785 120788863 -29994690 - FLAM_A SINE Alu -17 125 31 21 71 0 0 chr11 120789698 120789740 -29993813 + AT_rich Low_complexity Low_complexity 1 42 0 562 221 13 0 chr11 120789760 120789914 -29993639 + L1MA4A LINE L1 5171 5326 -820 * 4936 48 0 0 chr11 120789900 120790527 -29993026 + L1PA3 LINE L1 5509 6135 -20 2888 75 0 8 chr11 120790730 120791118 -29992435 + L1PA6 LINE L1 5770 6154 0 255 159 0 0 chr11 120791118 120791172 -29992381 + A-rich Low_complexity Low_complexity 7 63 0 207 0 0 0 chr11 120791226 120791249 -29992304 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3434 154 43 23 chr11 120791249 120791385 -29992168 + L1MA4A LINE L1 5302 5434 -869 2086 119 0 0 chr11 120791385 120791670 -29991883 + AluSx SINE Alu 1 285 -27 3434 154 43 23 chr11 120791670 120791815 -29991738 + L1MA4A LINE L1 5434 5575 -728 1824 146 182 3 chr11 120791815 120792178 -29991375 + MSTA LTR MaLR 1 428 0 3434 154 43 23 chr11 120792178 120792588 -29990965 + L1MA4A LINE L1 5575 6008 -295 465 320 37 98 chr11 120792678 120793003 -29990550 + L2 LINE L2 2967 3271 -1 4519 118 28 34 chr11 120793618 120794534 -29989019 + L1PB1 LINE L1 5285 6172 0 321 231 8 100 chr11 120794619 120794749 -29988804 + L1ME4a LINE L1 5928 6045 -76 5825 92 26 8 chr11 120794771 120795661 -29987892 - L1PA8 LINE L1 -9 6163 5258 338 315 77 38 chr11 120795791 120796026 -29987527 - MIR SINE MIR -2 260 17 220 340 177 3 chr11 120796602 120796825 -29986728 - MIR SINE MIR -4 258 4 571 262 96 32 chr11 120797080 120797267 -29986286 + MER58A DNA MER1_type 1 199 -25 212 371 59 12 chr11 120797519 120797689 -29985864 - L2 LINE L2 -1313 2001 1824 762 210 0 7 chr11 120798380 120798523 -29985030 - AluSq/x SINE Alu -168 144 3 1267 91 5 0 chr11 120798526 120798712 -29984841 + L1MA2 LINE L1 6118 6304 0 391 194 54 54 chr11 120800364 120800493 -29983060 - L1MEd LINE L1 -5059 1060 932 553 252 12 73 chr11 120800495 120800741 -29982812 - L1ME3A LINE L1 -22 6148 5918 401 225 99 9 chr11 120800780 120800993 -29982560 - L1M4 LINE L1 -2915 3729 3498 * 796 247 73 50 chr11 120800989 120801539 -29982014 - L1M4 LINE L1 -4976 1566 996 1564 176 16 28 chr11 120801545 120801868 -29981685 - L1MC1 LINE L1 0 6333 6015 201 274 155 0 chr11 120803840 120803924 -29979629 - MIR SINE MIR -17 245 149 1760 188 65 21 chr11 120804126 120804498 -29979055 + MSTA LTR MaLR 5 392 -36 4127 17 4 0 chr11 120804498 120804976 -29978577 - L1PA2 LINE L1 -5 6150 5671 373 192 39 0 chr11 120805015 120805093 -29978460 + MLT1I LTR MaLR 308 388 -21 545 224 40 8 chr11 120805335 120805460 -29978093 + FLAM_A SINE Alu 1 129 -4 438 191 135 8 chr11 120805548 120805674 -29977879 + L1ME1 LINE L1 6010 6151 -15 657 283 159 40 chr11 120806638 120806991 -29976562 - L2 LINE L2 -1 3312 2918 4138 21 14 0 chr11 120807074 120807559 -29975994 - L1PA2 LINE L1 0 6155 5664 874 316 71 46 chr11 120807561 120808125 -29975428 - L2 LINE L2 -420 2894 2317 1241 217 135 0 chr11 120808126 120808453 -29975100 + MLT2B1 LTR ERVL 1 371 -149 288 125 28 0 chr11 120808453 120808514 -29975039 - MLT2A1 LTR ERVL 0 444 388 192 127 55 0 chr11 120808518 120808573 -29974980 + (TA)n Simple_repeat Simple_repeat 2 59 0 2886 87 0 5 chr11 120808574 120808976 -29974577 - MLT2A1 LTR ERVL -44 400 1 690 0 34 0 chr11 120808976 120809064 -29974489 - HERVL-A1 LTR ERVL 0 5654 5564 7281 76 18 1 chr11 120809164 120810153 -29973400 - HERVL-A1 LTR ERVL -4648 1006 1 365 77 0 0 chr11 120810153 120810212 -29973341 - MLT2A1 LTR ERVL 0 444 395 231 323 62 0 chr11 120810221 120810453 -29973100 + (CA)n Simple_repeat Simple_repeat 1 246 0 585 120 44 77 chr11 120810457 120810817 -29972736 + (TA)n Simple_repeat Simple_repeat 1 348 0 2843 88 5 2 chr11 120810820 120811219 -29972334 - MLT2A1 LTR ERVL -44 400 1 447 167 93 72 chr11 120811223 120811320 -29972233 + MLT2B1 LTR ERVL 269 366 -48 225 0 0 0 chr11 120811333 120811358 -29972195 + (TG)n Simple_repeat Simple_repeat 2 26 0 393 356 88 0 chr11 120811391 120811585 -29971968 - L2 LINE L2 -993 2321 2111 23 33 0 0 chr11 120811806 120811836 -29971717 + AT_rich Low_complexity Low_complexity 1 30 0 644 242 90 5 chr11 120812921 120813132 -29970421 - LTR16C LTR ERVL -1 490 262 599 276 77 64 chr11 120813345 120813657 -29969896 - MLT1I LTR MaLR -39 370 55 1809 119 0 16 chr11 120814617 120814869 -29968684 - AluSc SINE Alu -23 286 39 510 288 98 18 chr11 120815299 120815600 -29967953 - MLT1I LTR MaLR 0 409 116 263 259 35 24 chr11 120815878 120815963 -29967590 - MIR3 SINE MIR -1 207 122 502 350 31 23 chr11 120816000 120816257 -29967296 - MIR SINE MIR 0 262 4 233 262 71 0 chr11 120816692 120816776 -29966777 + MLT1K LTR MaLR 394 483 -105 1617 216 25 68 chr11 120817139 120817654 -29965899 - MLT1D LTR MaLR 0 505 13 877 93 78 0 chr11 120818292 120818421 -29965132 - MER85 DNA T2_type 0 139 1 446 234 32 51 chr11 120818453 120818611 -29964942 - L2 LINE L2 -1 3312 3158 987 229 23 0 chr11 120818710 120818924 -29964629 + MER20 DNA MER1_type 1 219 0 528 352 44 26 chr11 120818924 120819197 -29964356 - L2 LINE L2 -434 2880 2603 225 59 0 0 chr11 120819217 120819251 -29964302 + MLT1F1 LTR MaLR 6 39 -528 1936 100 118 18 chr11 120819293 120819633 -29963920 + THE1C LTR MaLR 2 375 0 1543 260 105 8 chr11 120819633 120820118 -29963435 + MLT1F1 LTR MaLR 36 567 0 342 264 108 0 chr11 120820133 120820262 -29963291 + ERVL LTR ERVL 5272 5414 -350 1135 295 87 74 chr11 120820523 120820589 -29962964 - L2 LINE L2 -683 2631 2567 2087 225 103 26 chr11 120820589 120821144 -29962409 + MLT2F LTR ERVL 1 609 -54 192 77 0 0 chr11 120821144 120821170 -29962383 + (CA)n Simple_repeat Simple_repeat 2 27 0 2087 225 103 26 chr11 120821170 120821227 -29962326 + MLT2F LTR ERVL 609 660 -3 1135 295 87 74 chr11 120821227 120821548 -29962005 - L2 LINE L2 -747 2567 2229 1506 207 52 0 chr11 120821548 120821818 -29961735 + AluJb SINE Alu 1 284 -28 1135 295 87 74 chr11 120821818 120822094 -29961459 - L2 LINE L2 -1085 2229 1958 1653 301 126 42 chr11 120822202 120823306 -29960247 + L2 LINE L2 44 1240 -2074 678 323 80 43 chr11 120823412 120824063 -29959490 + L2 LINE L2 1609 2283 -1031 713 180 45 60 chr11 120824075 120824275 -29959278 + MER3 DNA MER1_type 9 205 -4 2016 124 48 38 chr11 120824517 120824888 -29958665 - THE1C LTR MaLR 0 375 1 5732 164 38 25 chr11 120825030 120825533 -29958020 - L1M1 LINE L1 -503 7221 6726 1802 50 0 0 chr11 120825533 120825750 -29957803 + L1PA5 LINE L1 5931 6152 -2 5732 164 38 25 chr11 120825750 120827011 -29956542 - L1M1 LINE L1 -998 6726 5418 * 11450 157 55 22 chr11 120827008 120827146 -29956407 - L1M1 LINE L1 -4583 2982 2850 2060 126 7 7 chr11 120827146 120827448 -29956105 - AluSg SINE Alu -8 302 1 11450 157 55 22 chr11 120827448 120829827 -29953726 - L1M1 LINE L1 -4715 2850 22 253 197 14 14 chr11 120829859 120829930 -29953623 + L1MB7 LINE L1 4222 4292 -1854 2818 184 26 82 chr11 120829978 120830218 -29953335 + LTR8 LTR ERV1 16 268 -423 22725 48 3 3 chr11 120830218 120833854 -29949699 + L1PA5 LINE L1 2510 6153 -1 2818 184 26 82 chr11 120833854 120834206 -29949347 + LTR8 LTR ERV1 268 564 -127 2348 99 0 13 chr11 120834206 120834520 -29949033 + AluSg SINE Alu 1 310 0 2818 184 26 82 chr11 120834520 120834642 -29948911 + LTR8 LTR ERV1 564 691 0 2309 231 23 38 chr11 120834642 120835320 -29948233 + L1MB7 LINE L1 4288 4955 -1191 209 56 0 28 chr11 120835320 120835356 -29948197 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 2309 231 23 38 chr11 120835356 120835447 -29948106 + L1MB7 LINE L1 4955 5046 -1100 2507 199 16 26 chr11 120835507 120836115 -29947438 + L1MB7 LINE L1 5567 6168 -16 3210 181 11 11 chr11 120836115 120836763 -29946790 + L1MD1 LINE L1 5593 6242 0 213 227 0 0 chr11 120836859 120836903 -29946650 + CT-rich Low_complexity Low_complexity 2 45 0 773 173 0 0 chr11 120837038 120837171 -29946382 + AluSq/x SINE Alu 1 133 -179 5343 134 18 20 chr11 120837975 120839147 -29944406 + L1PA16 LINE L1 4987 6158 -8 2219 97 10 13 chr11 120839539 120839849 -29943704 + AluY SINE Alu 3 311 0 182 330 35 58 chr11 120840084 120840257 -29943296 + L2 LINE L2 2955 3123 -190 267 173 0 0 chr11 120840403 120840455 -29943098 + (ATG)n Simple_repeat Simple_repeat 2 53 0 320 315 48 93 chr11 120840557 120840846 -29942707 - L2 LINE L2 -1 3271 2996 1768 181 7 3 chr11 120841263 120841562 -29941991 + AluJo SINE Alu 3 302 -10 2340 229 77 148 chr11 120841567 120842591 -29940962 - L2 LINE L2 -5 3308 2213 1152 206 0 9 chr11 120842591 120842805 -29940748 - AluJo SINE Alu -14 298 87 2340 229 77 148 chr11 120842805 120843132 -29940421 - L2 LINE L2 -1100 2213 1878 1463 119 139 77 chr11 120843132 120843485 -29940068 - THE1C LTR MaLR 0 375 1 2340 229 77 148 chr11 120843485 120843624 -29939929 - L2 LINE L2 -1435 1878 1731 35 0 0 0 chr11 120843673 120843708 -29939845 + AT_rich Low_complexity Low_complexity 1 35 0 409 352 49 6 chr11 120844065 120844227 -29939326 - MIR3 SINE MIR -7 201 33 260 364 33 0 chr11 120844597 120844718 -29938835 - MIR SINE MIR -52 210 86 607 298 49 25 chr11 120845208 120845453 -29938100 + MIR SINE MIR 12 262 0 1714 129 7 14 chr11 120845471 120845757 -29937796 - L1PB2 LINE L1 -1 6150 5867 1474 133 19 11 chr11 120845791 120846054 -29937499 - L1PB2 LINE L1 -22 6129 5865 405 269 121 50 chr11 120846435 120846617 -29936936 - MIR SINE MIR -49 213 19 197 311 75 0 chr11 120846810 120846901 -29936652 - L3 LINE CR1 -353 1224 1123 400 224 21 94 chr11 120846901 120847093 -29936460 + MER5B DNA MER1_type 1 178 0 197 311 75 0 chr11 120847093 120847107 -29936446 - L3 LINE CR1 -454 1123 1111 228 327 208 0 chr11 120847668 120847769 -29935784 + L2 LINE L2 3175 3296 -17 212 179 0 0 chr11 120847896 120847935 -29935618 + (TTATA)n Simple_repeat Simple_repeat 1 39 0 360 274 84 17 chr11 120849130 120849276 -29934277 + MER5A DNA MER1_type 14 186 -3 235 296 51 41 chr11 120849193 120849291 -29934262 - MER5A DNA MER1_type -87 102 4 * 198 327 159 19 chr11 120849743 120849951 -29933602 + L2 LINE L2 2741 2977 -337 235 265 108 45 chr11 120850435 120850658 -29932895 - L1ME LINE L1 -234 5887 5651 2235 99 7 0 chr11 120850830 120851124 -29932429 - AluSx SINE Alu -16 296 1 680 168 37 47 chr11 120851719 120851910 -29931643 + MER53 DNA DNA 1 189 0 601 273 59 11 chr11 120852285 120852472 -29931081 - MIR SINE MIR -39 223 28 804 286 33 0 chr11 120852929 120853139 -29930414 - MIR SINE MIR -34 228 12 251 303 0 0 chr11 120853141 120853207 -29930346 + MIR SINE MIR 176 241 -21 658 283 33 6 chr11 120854028 120854208 -29929345 + MIR SINE MIR 13 197 -65 2033 145 0 0 chr11 120854340 120854629 -29928924 - AluSc SINE Alu -20 289 1 425 345 84 13 chr11 120854830 120855129 -29928424 - L1ME LINE L1 -303 5818 5499 1457 144 4 62 chr11 120855220 120855476 -29928077 - AluSg SINE Alu -13 297 57 296 167 0 0 chr11 120855577 120855643 -29927910 + L1MC2 LINE L1 6268 6333 -11 293 367 8 8 chr11 120855667 120855787 -29927766 - MER5A DNA MER1_type -52 137 18 511 318 17 17 chr11 120855790 120855969 -29927584 - L3 LINE CR1 -106 1471 1293 664 287 37 28 chr11 120855979 120856195 -29927358 - MIR SINE MIR -37 225 8 199 296 123 12 chr11 120856196 120856277 -29927276 - L3 LINE CR1 -274 1303 1214 623 195 16 79 chr11 120856568 120856758 -29926795 + MLT1D LTR MaLR 2 179 -326 2264 102 3 0 chr11 120857561 120857854 -29925699 + AluSg SINE Alu 1 294 -16 230 81 27 0 chr11 120857898 120857935 -29925618 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 180 267 44 0 chr11 120858001 120858046 -29925507 - MIR SINE MIR -62 146 100 278 261 120 0 chr11 120858573 120858665 -29924888 + MIR SINE MIR 106 208 -54 1369 164 20 10 chr11 120861883 120862181 -29921372 - L1MA4A LINE L1 -181 6122 5822 279 340 77 0 chr11 120862858 120863014 -29920539 - MIR3 SINE MIR -7 201 34 350 316 118 16 chr11 120863668 120863855 -29919698 + L1ME LINE L1 5386 5591 -530 2307 129 28 8 chr11 120864542 120864899 -29918654 + THE1B LTR MaLR 1 364 0 3051 153 65 4 chr11 120864931 120865488 -29918065 + MER6A DNA MER2_type 13 603 -2 318 50 0 0 chr11 120865488 120865528 -29918025 + (TG)n Simple_repeat Simple_repeat 1 40 0 281 318 0 45 chr11 120866189 120866277 -29917276 + MIR SINE MIR 21 104 -158 10257 94 2 4 chr11 120866658 120868104 -29915449 + THE1B-int LTR MaLR 138 1580 0 2170 125 47 39 chr11 120868104 120868465 -29915088 + THE1B LTR MaLR 1 364 0 684 304 48 28 chr11 120868869 120869119 -29914434 + MIR SINE MIR 3 257 -5 1533 160 58 49 chr11 120869171 120869515 -29914038 + THE1C LTR MaLR 1 347 -28 6315 58 1 1 chr11 120869515 120870341 -29913212 - L1PA6 LINE L1 -3 6151 5326 21 36 0 0 chr11 120873073 120873101 -29910452 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr11 120873167 120873203 -29910350 + AT_rich Low_complexity Low_complexity 1 36 0 381 289 89 36 chr11 120873256 120873448 -29910105 - MIR SINE MIR -46 216 22 280 318 68 15 chr11 120874113 120874245 -29909308 + MIR SINE MIR 3 141 -121 270 344 19 45 chr11 120875373 120875583 -29907970 - MIR SINE MIR 0 262 6 399 41 0 0 chr11 120877522 120877571 -29905982 + (TG)n Simple_repeat Simple_repeat 2 50 0 342 304 62 25 chr11 120878018 120878179 -29905374 - L1ME LINE L1 -392 5729 5563 21 0 0 0 chr11 120878354 120878375 -29905178 + AT_rich Low_complexity Low_complexity 1 21 0 3240 221 39 7 chr11 120878564 120879513 -29904040 - L1 LINE L1 -2993 4215 3237 10868 214 30 12 chr11 120879513 120881263 -29902290 - L1PA16 LINE L1 -1 6868 5151 387 0 0 0 chr11 120881263 120881306 -29902247 + (TG)n Simple_repeat Simple_repeat 2 44 0 10868 214 30 12 chr11 120881306 120886509 -29897044 - L1PA16 LINE L1 -1718 5151 2 6426 239 78 38 chr11 120886537 120889594 -29893959 - L1 LINE L1 -3961 3248 2 375 219 0 0 chr11 120889803 120889876 -29893677 + HAL1 LINE L1 1297 1369 -1138 306 219 184 10 chr11 120889875 120890071 -29893482 - HAL1 LINE L1 -1168 1339 1110 * 404 344 109 18 chr11 120890149 120890480 -29893073 + LTR16A LTR ERVL 90 450 0 430 307 88 26 chr11 120890525 120890753 -29892800 - HAL1 LINE L1 -1282 1225 984 5598 197 37 30 chr11 120891176 120893389 -29890164 - L1MB7 LINE L1 0 6184 3964 3890 90 21 2 chr11 120893702 120894259 -29889294 - L1PA13 LINE L1 0 6163 5596 222 357 63 8 chr11 120894585 120894711 -29888842 + MIR3 SINE MIR 30 162 -46 2547 58 0 3 chr11 120895444 120895755 -29887798 - AluY SINE Alu -1 310 1 299 311 117 0 chr11 120896433 120896536 -29887017 + MER5B DNA MER1_type 2 116 -62 1392 217 70 27 chr11 120896536 120896978 -29886575 - MLT1C LTR MaLR 0 467 7 358 288 187 7 chr11 120897060 120897199 -29886354 - MER5A DNA MER1_type 0 189 26 677 220 84 7 chr11 120898088 120898361 -29885192 - L1MC4 LINE L1 0 8042 7749 5743 142 7 3 chr11 120898502 120899758 -29883795 - L1PA15 LINE L1 -6 6159 4854 292 217 0 0 chr11 120899817 120899886 -29883667 - L1 LINE L1 -1287 4859 4791 298 118 20 0 chr11 120900019 120900070 -29883483 - L1PA15 LINE L1 -1365 4781 4730 724 266 48 63 chr11 120900096 120900554 -29882999 - L1MC4 LINE L1 -472 7570 7120 1062 234 78 21 chr11 120900802 120901135 -29882418 + L1MC4 LINE L1 6698 7049 -993 696 339 51 19 chr11 120902481 120902856 -29880697 - MLT1K LTR MaLR -19 569 183 656 219 20 0 chr11 120904221 120904372 -29879181 - L1MA10 LINE L1 -8 6326 6173 299 360 93 12 chr11 120904870 120905031 -29878522 - MIR3 SINE MIR -4 204 31 339 150 0 0 chr11 120905217 120905277 -29878276 + (CTA)n Simple_repeat Simple_repeat 3 62 0 364 260 0 4 chr11 120905280 120905414 -29878139 - MIR SINE MIR -11 251 75 334 315 62 39 chr11 120905695 120905825 -29877728 - MIR SINE MIR -109 153 21 234 281 9 0 chr11 120905849 120905920 -29877633 + GA-rich Low_complexity Low_complexity 2 118 0 706 164 68 0 chr11 120906957 120907103 -29876450 - L1MC1 LINE L1 -5 6328 6173 220 109 65 0 chr11 120907188 120907234 -29876319 + T-rich Low_complexity Low_complexity 4 52 0 181 167 0 0 chr11 120907361 120907391 -29876162 + L2 LINE L2 3277 3306 -7 228 37 0 0 chr11 120908979 120909006 -29874547 - tRNA-Gln-CAG tRNA tRNA -32 43 17 750 162 54 0 chr11 120909008 120909156 -29874397 + L1MC1 LINE L1 6173 6328 -5 512 250 83 12 chr11 120909245 120909413 -29874140 + MIR SINE MIR 70 249 -13 254 318 128 20 chr11 120910472 120910620 -29872933 - L2 LINE L2 0 3272 3109 186 297 188 30 chr11 120910674 120910775 -29872778 + L2 LINE L2 3196 3312 -1 1735 171 42 0 chr11 120911155 120911441 -29872112 - AluSx SINE Alu -14 298 1 344 328 146 0 chr11 120911453 120911624 -29871929 - MIR SINE MIR -18 244 49 328 355 66 24 chr11 120912738 120912949 -29870604 - MIR SINE MIR -16 246 27 1044 135 0 93 chr11 120913096 120913121 -29870432 + LTR8 LTR ERV1 12 38 -653 2335 126 38 81 chr11 120913121 120913565 -29869988 - MER61B LTR ERV1 0 425 1 1044 135 0 93 chr11 120913565 120913754 -29869799 + LTR8 LTR ERV1 38 206 -485 2332 137 21 13 chr11 120913773 120914152 -29869401 + LTR8 LTR ERV1 310 691 0 3152 154 14 64 chr11 120915868 120916512 -29867041 - LTR9 LTR ERV1 0 612 1 294 227 53 0 chr11 120917383 120917458 -29866095 + MIR SINE MIR 78 156 -106 649 296 121 5 chr11 120917627 120917826 -29865727 - MIR SINE MIR -35 227 6 207 164 0 180 chr11 120918413 120918474 -29865079 + L2 LINE L2 3264 3313 0 1678 264 103 42 chr11 120918593 120919371 -29864182 + HAL1 LINE L1 1677 2501 -6 480 306 174 7 chr11 120921816 120922097 -29861456 + MLT1K LTR MaLR 145 472 -116 21 57 0 0 chr11 120922633 120922668 -29860885 + AT_rich Low_complexity Low_complexity 1 35 0 1961 174 0 0 chr11 120923006 120923311 -29860242 + AluSx SINE Alu 1 305 -7 212 243 297 18 chr11 120923362 120923473 -29860080 - MIR SINE MIR -1 261 120 443 256 80 86 chr11 120923591 120923993 -29859560 + MLT1H LTR MaLR 90 549 0 1867 177 3 3 chr11 120924181 120924480 -29859073 - AluJo SINE Alu -13 299 1 301 299 209 34 chr11 120924632 120924866 -29858687 - L2 LINE L2 -810 2504 2230 273 290 181 38 chr11 120925543 120925936 -29857617 - L2 LINE L2 -1184 2130 1682 635 272 71 21 chr11 120926220 120926459 -29857094 + MIR SINE MIR 12 262 0 2208 141 30 28 chr11 120926718 120927081 -29856472 + THE1B LTR MaLR 1 364 0 405 341 55 18 chr11 120928893 120929110 -29854443 - MIR SINE MIR -37 225 1 244 341 16 71 chr11 120929235 120929361 -29854192 - MIR SINE MIR -142 120 2 431 225 196 36 chr11 120930925 120931063 -29852490 + MER5B DNA MER1_type 10 169 -9 233 75 25 0 chr11 120931176 120931216 -29852337 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 2218 124 0 0 chr11 120932111 120932417 -29851136 - AluSg SINE Alu -4 306 1 455 274 41 33 chr11 120932629 120932815 -29850738 - MIR SINE MIR -40 222 41 184 262 115 0 chr11 120933048 120933109 -29850444 - MIR SINE MIR -121 141 74 2439 156 29 5 chr11 120933634 120934050 -29849503 - MSTB LTR MaLR 0 426 1 333 252 53 53 chr11 120934145 120934296 -29849257 - MLT1L LTR MaLR -2 613 463 332 214 33 143 chr11 120934479 120934661 -29848892 - MLT1J LTR MaLR -344 167 6 677 199 50 6 chr11 120934978 120935159 -29848394 - MER53 DNA DNA 0 189 1 338 323 127 9 chr11 120936620 120936840 -29846713 + MIR SINE MIR 3 248 -14 280 292 81 43 chr11 120938185 120938346 -29845207 + MIR SINE MIR 12 178 -84 192 77 0 0 chr11 120938371 120938397 -29845156 + (TG)n Simple_repeat Simple_repeat 2 27 0 1929 144 11 3 chr11 120939536 120939820 -29843733 - AluSx SINE Alu -23 289 4 455 248 206 18 chr11 120940136 120940354 -29843199 - MER112 DNA MER1_type 0 260 2 265 225 44 97 chr11 120941488 120941620 -29841933 + MIR3 SINE MIR 53 184 -24 753 288 10 27 chr11 120941744 120942039 -29841514 - L1ME2 LINE L1 -44 6120 5831 2030 105 40 0 chr11 120942046 120942323 -29841230 + AluSx SINE Alu 1 288 -24 210 37 0 0 chr11 120942323 120942350 -29841203 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 813 228 54 4 chr11 120942372 120942755 -29840798 - L1ME2 LINE L1 -683 5479 5071 6129 103 21 3 chr11 120942781 120943937 -29839616 + L1PA14 LINE L1 4927 6149 -12 13898 206 71 25 chr11 120945143 120950219 -29833334 + L1MA8 LINE L1 542 5778 -1473 2072 142 13 3 chr11 120950219 120950528 -29833025 - AluSx SINE Alu 0 312 1 13898 206 71 25 chr11 120950528 120952061 -29831492 + L1MA8 LINE L1 5778 7239 -12 325 309 66 12 chr11 120952215 120952527 -29831026 + L1ME LINE L1 840 1205 -4981 333 344 26 5 chr11 120952529 120952721 -29830832 + L1ME LINE L1 1378 1573 -4688 32 43 0 0 chr11 120952747 120952793 -29830760 + AT_rich Low_complexity Low_complexity 1 46 0 465 301 73 63 chr11 120952916 120953315 -29830238 + L1ME LINE L1 1762 2164 -4097 387 322 127 10 chr11 120953316 120953521 -29830032 + L1MEc LINE L1 36 264 -6132 294 203 95 0 chr11 120953599 120953673 -29829880 - L1MEc LINE L1 -2268 3947 3867 348 188 0 0 chr11 120953677 120953746 -29829807 + (CA)n Simple_repeat Simple_repeat 2 70 0 259 206 175 0 chr11 120953788 120953827 -29829726 - L1MEc LINE L1 -2931 3284 3253 240 35 0 0 chr11 120953827 120953856 -29829697 + (TG)n Simple_repeat Simple_repeat 2 30 0 259 206 175 0 chr11 120953856 120953942 -29829611 - L1MEc LINE L1 -2962 3253 3137 * 4925 264 83 31 chr11 120953919 120955142 -29828411 - L1MEc LINE L1 -4317 2079 715 2715 65 0 14 chr11 120955142 120955513 -29828040 - L1PA8 LINE L1 0 6172 5807 4925 264 83 31 chr11 120955513 120956233 -29827320 - L1MEc LINE L1 -5681 715 34 190 209 139 0 chr11 120956256 120956299 -29827254 + L2 LINE L2 3219 3267 -5 470 321 95 48 chr11 120957830 120958145 -29825408 - L2 LINE L2 0 3313 2984 415 297 68 0 chr11 120958428 120958587 -29824966 - MIR SINE MIR -62 146 9 4820 42 14 0 chr11 120958604 120959298 -29824255 - L1PA4 LINE L1 -706 5448 4747 5912 23 10 0 chr11 120959299 120959989 -29823564 + L1PA4 LINE L1 5458 6154 -1 386 313 8 22 chr11 120960066 120960200 -29823353 + L2 LINE L2 3169 3300 -13 2046 143 0 0 chr11 120960310 120960610 -29822943 + AluSx SINE Alu 1 300 -12 201 351 101 32 chr11 120960659 120960847 -29822706 - L2 LINE L2 -208 3064 2864 934 246 138 27 chr11 120960976 120961476 -29822077 - MLT1G1 LTR MaLR 0 595 7 294 364 56 26 chr11 120963094 120963289 -29820264 + L2 LINE L2 2621 2821 -493 404 308 8 17 chr11 120963320 120963437 -29820116 + L2 LINE L2 3198 3313 0 2065 130 0 20 chr11 120963507 120963808 -29819745 - AluSx SINE Alu -17 295 1 368 94 31 0 chr11 120963822 120963886 -29819667 - MSTB1 LTR MaLR 0 432 367 1366 179 0 4 chr11 120963890 120964136 -29819417 - L1PA15 LINE L1 0 6165 5921 11630 201 20 16 chr11 120964136 120964990 -29818563 - L1PA15 LINE L1 -123 6042 5193 237 33 0 0 chr11 120964990 120965020 -29818533 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 11630 201 20 16 chr11 120965020 120967873 -29815680 - L1PA15 LINE L1 -972 5193 2330 1719 151 59 48 chr11 120967884 120968256 -29815297 - MSTB1 LTR MaLR -56 376 1 269 289 27 36 chr11 120968438 120968587 -29814966 + MIR SINE MIR 1 190 -72 887 183 0 78 chr11 120969622 120969813 -29813740 - MER45A DNA AcHobo -1 177 2 1014 275 147 27 chr11 120970290 120970697 -29812856 - MLT1J LTR MaLR -53 458 3 25 75 0 0 chr11 120971166 120971219 -29812334 + AT_rich Low_complexity Low_complexity 1 53 0 2405 113 8 8 chr11 120972525 120972880 -29810673 + THE1A LTR MaLR 1 355 0 1444 198 0 3 chr11 120973209 120973497 -29810056 + MER95 LTR ERV 1 287 -144 204 64 64 64 chr11 120973497 120973544 -29810009 + T-rich Low_complexity Low_complexity 2 48 0 1530 26 0 16 chr11 120973566 120973756 -29809797 - L1PA5 LINE L1 -6 6148 5962 386 231 100 0 chr11 120973757 120973887 -29809666 + MER95 LTR ERV 289 431 0 226 342 56 92 chr11 120976387 120976583 -29806970 - L2 LINE L2 -174 3098 2910 201 231 0 0 chr11 120976835 120976874 -29806679 + (TG)n Simple_repeat Simple_repeat 2 40 0 728 244 32 0 chr11 120977025 120977181 -29806372 + MIR SINE MIR 71 231 -31 217 356 0 45 chr11 120977420 120977552 -29806001 + MIR SINE MIR 29 154 -108 279 28 0 0 chr11 120978110 120978146 -29805407 - tRNA-His-CAC tRNA tRNA -39 36 1 22 35 0 0 chr11 120979352 120979381 -29804172 + AT_rich Low_complexity Low_complexity 1 29 0 299 259 0 12 chr11 120979517 120979598 -29803955 + MLT1L LTR MaLR 1 80 -535 554 228 76 43 chr11 120979690 120979874 -29803679 + MLT1J LTR MaLR 231 420 -91 2216 114 0 3 chr11 120980580 120980888 -29802665 - AluSx SINE Alu -5 307 1 1995 140 7 0 chr11 120981153 120981445 -29802108 + AluSx SINE Alu 1 294 -18 221 291 18 0 chr11 120981471 120981526 -29802027 - L2 LINE L2 -15 3298 3243 197 234 16 0 chr11 120982133 120982197 -29801356 + (TA)n Simple_repeat Simple_repeat 2 66 0 22 35 0 0 chr11 120982324 120982353 -29801200 + AT_rich Low_complexity Low_complexity 1 29 0 204 40 0 0 chr11 120982618 120982643 -29800910 + (T)n Simple_repeat Simple_repeat 1 25 0 2073 42 8 0 chr11 120982656 120982915 -29800638 - L1PA2 LINE L1 0 6155 5895 295 367 72 69 chr11 120983669 120984116 -29799437 + L2 LINE L2 2824 3271 -1 1661 162 10 30 chr11 120984363 120984665 -29798888 + AluSx SINE Alu 1 296 -16 243 0 0 0 chr11 120985899 120985926 -29797627 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 492 266 154 16 chr11 120986531 120986560 -29796993 - MIR SINE MIR -35 227 203 1145 179 60 112 chr11 120986560 120986945 -29796608 + MLT1A1 LTR MaLR 1 365 0 492 266 154 16 chr11 120986945 120987103 -29796450 - MIR SINE MIR -59 203 14 1045 175 31 58 chr11 120988450 120988673 -29794880 - MER20 DNA MER1_type -2 217 1 374 322 50 33 chr11 120989557 120989858 -29793695 - L1MC4a LINE L1 -1910 5898 5593 210 402 87 8 chr11 120990685 120990812 -29792741 + L2 LINE L2 2646 2782 -532 1437 85 0 5 chr11 120990815 120991016 -29792537 + L1PA8A LINE L1 5905 6104 -27 290 264 58 33 chr11 120991088 120991209 -29792344 + MLT1I LTR MaLR 228 351 -58 288 384 40 25 chr11 120991215 120991413 -29792140 + L2 LINE L2 2773 2973 -341 532 282 29 6 chr11 120991431 120991605 -29791948 + MLT1I LTR MaLR 3 180 -229 227 301 21 0 chr11 120992059 120992152 -29791401 + CT-rich Low_complexity Low_complexity 1 95 0 213 219 0 0 chr11 120992276 120992349 -29791204 + CT-rich Low_complexity Low_complexity 1 73 0 369 293 5 19 chr11 120993566 120993755 -29789798 - MIR SINE MIR -5 257 19 518 270 72 59 chr11 120993763 120994000 -29789553 + MIR SINE MIR 21 260 -2 321 219 47 31 chr11 120994498 120994626 -29788927 + CT-rich Low_complexity Low_complexity 6 135 0 220 337 24 0 chr11 120994655 120994738 -29788815 - MIR SINE MIR -113 149 65 521 201 106 70 chr11 120994742 120994771 -29788782 - L1MA9 LINE L1 -38 6274 6247 2370 83 3 0 chr11 120994771 120995073 -29788480 - AluY SINE Alu -8 303 1 521 201 106 70 chr11 120995073 120995242 -29788311 - L1MA9 LINE L1 -65 6247 6069 182 380 33 11 chr11 120997152 120997244 -29786309 + MER5A DNA MER1_type 95 188 -1 303 279 31 35 chr11 120997290 120997474 -29786079 + L1ME4a LINE L1 5322 5515 -2270 455 253 45 39 chr11 120997968 120997994 -29785559 + L1ME4a LINE L1 5558 5582 -573 489 84 0 0 chr11 120997994 120998065 -29785488 + (CA)n Simple_repeat Simple_repeat 2 72 0 455 253 45 39 chr11 120998065 120998270 -29785283 + L1ME4a LINE L1 5582 5791 -364 347 211 78 16 chr11 120998341 120998469 -29785084 + L1ME4a LINE L1 5977 6112 -9 200 33 0 33 chr11 120999043 120999073 -29784480 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 484 199 262 7 chr11 120999480 120999621 -29783932 - MER5A DNA MER1_type -3 186 10 1827 141 27 45 chr11 120999849 121000225 -29783328 + THE1C LTR MaLR 1 369 -6 226 241 19 0 chr11 121000261 121000315 -29783238 + MIR SINE MIR 88 142 -120 312 319 105 16 chr11 121000877 121001025 -29782528 - MIR SINE MIR -66 196 38 2223 110 3 0 chr11 121002534 121002825 -29780728 + AluSp SINE Alu 1 292 -21 2518 49 10 0 chr11 121002946 121003254 -29780299 - AluY SINE Alu 0 311 1 22 0 0 0 chr11 121003384 121003406 -29780147 + AT_rich Low_complexity Low_complexity 1 22 0 5347 117 7 3 chr11 121003410 121004270 -29779283 - L1PB1 LINE L1 -8 6143 5281 32320 32 3 0 chr11 121004280 121009508 -29774045 - L1PA2 LINE L1 -3 6152 917 3323 72 7 0 chr11 121009501 121009959 -29773594 - L1PA2 LINE L1 -5685 461 1 * 5248 204 17 7 chr11 121009962 121010861 -29772692 - L1PB1 LINE L1 -836 5310 4394 189 0 0 0 chr11 121010861 121010882 -29772671 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 5248 204 17 7 chr11 121010882 121011229 -29772324 - L1PB1 LINE L1 -1752 4394 4052 772 201 13 0 chr11 121011599 121011753 -29771800 + L1PBa LINE L1 1394 1549 -5314 * 945 214 0 0 chr11 121011749 121011931 -29771622 + L1PBa LINE L1 1455 1636 -5227 * 6009 161 22 7 chr11 121011905 121013242 -29770311 + L1PBb LINE L1 7 1366 -4838 * 8052 130 47 7 chr11 121013216 121014163 -29769390 + L1P5 LINE L1 -657 365 -5839 1923 153 0 0 chr11 121014163 121014513 -29769040 + AluSx SINE Alu 1 350 0 8052 130 47 7 chr11 121014513 121014946 -29768607 + L1P5 LINE L1 365 779 -5425 * 12344 200 41 28 chr11 121014943 121019589 -29763964 + L1P5 LINE L1 1083 5848 -360 200 226 19 19 chr11 121019589 121019642 -29763911 + (TATG)n Simple_repeat Simple_repeat 4 56 0 232 303 0 0 chr11 121019643 121019732 -29763821 + L1MC4 LINE L1 6615 6703 -1339 203 184 0 20 chr11 121019734 121019783 -29763770 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 12839 179 32 20 chr11 121019786 121023944 -29759609 + L1PB2 LINE L1 2382 6589 -278 1032 172 0 0 chr11 121023945 121024201 -29759352 + (TA)n Simple_repeat Simple_repeat 1 256 0 3877 74 14 0 chr11 121024307 121024864 -29758689 - THE1B-int LTR MaLR -1015 565 1 2017 120 69 29 chr11 121024864 121025214 -29758339 - THE1B LTR MaLR 0 364 1 190 241 35 17 chr11 121025351 121025409 -29758144 - MIR SINE MIR -202 60 2 775 144 7 20 chr11 121026048 121026194 -29757359 + L1MA9 LINE L1 6169 6312 0 22 35 0 0 chr11 121026518 121026547 -29757006 + AT_rich Low_complexity Low_complexity 1 29 0 1083 31 0 0 chr11 121026594 121026724 -29756829 - L1PA2 LINE L1 0 6155 6026 1388 23 0 0 chr11 121026724 121026895 -29756658 + L1PA3 LINE L1 5869 6039 -116 2678 224 58 66 chr11 121026896 121028284 -29755269 - L1MC5 LINE L1 -48 7913 6535 21 0 0 0 chr11 121028604 121028625 -29754928 + AT_rich Low_complexity Low_complexity 1 21 0 343 307 11 78 chr11 121028858 121029128 -29754425 - L1MC5 LINE L1 -1938 5870 5619 2045 153 6 6 chr11 121029140 121029493 -29754060 - MLT1A1 LTR MaLR -12 353 1 994 260 32 0 chr11 121029493 121029805 -29753748 - L1MC5 LINE L1 -2185 5623 5302 2213 113 0 10 chr11 121029865 121030176 -29753377 - AluSx SINE Alu -4 308 1 23 33 0 0 chr11 121030408 121030438 -29753115 + AT_rich Low_complexity Low_complexity 1 30 0 1484 234 61 24 chr11 121030932 121031394 -29752159 + MER20B DNA MER1_type 29 507 -276 213 284 98 69 chr11 121031853 121031955 -29751598 - L2 LINE L2 -2 3270 3166 192 365 94 19 chr11 121033116 121033275 -29750278 - MIR SINE MIR -88 174 4 2252 94 0 0 chr11 121034441 121034718 -29748835 + AluSc SINE Alu 5 281 -28 186 277 0 21 chr11 121034809 121034856 -29748697 - MER5A DNA MER1_type -88 101 56 1451 184 110 72 chr11 121034860 121035188 -29748365 + MLT1C LTR MaLR 1 352 -115 1733 198 146 69 chr11 121035188 121035955 -29747598 + LTR1B LTR ERV1 1 826 0 1451 184 110 72 chr11 121035955 121036072 -29747481 + MLT1C LTR MaLR 352 463 -4 211 291 271 16 chr11 121036927 121037171 -29746382 - L2 LINE L2 0 3313 3008 663 175 127 42 chr11 121037234 121037423 -29746130 + MER3 DNA MER1_type 5 209 0 2355 164 36 7 chr11 121037471 121037561 -29745992 - LOR1b LTR ERV1 0 461 375 1957 57 0 0 chr11 121037561 121037805 -29745748 + L1PA4 LINE L1 5911 6154 -1 2355 164 36 7 chr11 121037805 121038160 -29745393 - LOR1b LTR ERV1 -86 375 3 2288 106 0 0 chr11 121038536 121038837 -29744716 - AluSq SINE Alu -12 301 1 464 297 96 32 chr11 121039257 121039476 -29744077 + MIR SINE MIR 29 261 -1 221 263 118 13 chr11 121039587 121039663 -29743890 - MIR SINE MIR -50 212 129 21 0 0 0 chr11 121040955 121040976 -29742577 + AT_rich Low_complexity Low_complexity 1 21 0 214 242 30 0 chr11 121041685 121041751 -29741802 + (TA)n Simple_repeat Simple_repeat 1 68 0 1757 79 0 8 chr11 121041794 121042035 -29741518 + L1PA8 LINE L1 5933 6171 -1 407 51 0 17 chr11 121042153 121042212 -29741341 + (TA)n Simple_repeat Simple_repeat 2 59 0 284 368 86 7 chr11 121042839 121043123 -29740430 - L2 LINE L2 -223 3049 2746 515 319 113 4 chr11 121043850 121043991 -29739562 - MIR SINE MIR 0 262 138 4585 176 65 23 chr11 121043991 121045029 -29738524 - Tigger6a DNA MER2_type -1 1082 1 515 319 113 4 chr11 121045029 121045116 -29738437 - MIR SINE MIR -124 138 9 256 342 11 0 chr11 121045196 121045324 -29738229 + GA-rich Low_complexity Low_complexity 1 129 0 674 241 37 0 chr11 121045744 121045960 -29737593 + L1 LINE L1 3196 3419 -2727 255 148 37 0 chr11 121045952 121046006 -29737547 + L1PA16 LINE L1 6102 6157 -9 * 311 282 64 16 chr11 121046403 121046591 -29736962 + L1ME4a LINE L1 5523 5719 -402 334 267 117 70 chr11 121046616 121046889 -29736664 + L1ME4a LINE L1 5794 6079 -42 2508 286 140 59 chr11 121048223 121049864 -29733689 - L2 LINE L2 -71 3242 1455 1056 281 11 8 chr11 121050099 121050359 -29733194 - MIR SINE MIR 0 262 2 227 266 9 71 chr11 121051001 121051114 -29732439 + MLT1J2 LTR MaLR 337 442 -8 333 269 83 10 chr11 121054545 121054652 -29728901 + MIR SINE MIR 37 149 -68 294 245 20 31 chr11 121056247 121056345 -29727208 + LTR45 LTR ERV1 390 486 -39 2440 136 43 11 chr11 121056661 121057103 -29726450 + L1MB3 LINE L1 5726 6181 -2 216 356 74 34 chr11 121057773 121057922 -29725631 - MIR SINE MIR -65 197 43 1352 118 11 0 chr11 121057937 121058124 -29725429 - AluY SINE Alu -122 189 1 556 286 48 6 chr11 121059018 121059186 -29724367 + MER5B DNA MER1_type 1 175 -3 286 222 56 0 chr11 121059201 121059273 -29724280 + MER5C DNA MER1_type 5 80 -244 254 314 80 15 chr11 121060244 121060381 -29723172 + MIR SINE MIR 91 236 -26 334 244 73 98 chr11 121060391 121060596 -29722957 - L2 LINE L2 0 3313 3114 434 251 108 70 chr11 121060774 121061089 -29722464 - MLT1K LTR MaLR -64 524 198 470 356 176 14 chr11 121061264 121061815 -29721738 - L2 LINE L2 -548 2766 2127 595 248 80 66 chr11 121062396 121062698 -29720855 - MLT1I LTR MaLR 0 409 104 405 0 0 0 chr11 121063738 121063783 -29719770 + (TC)n Simple_repeat Simple_repeat 2 46 0 * 459 0 0 0 chr11 121063782 121063833 -29719720 + (TG)n Simple_repeat Simple_repeat 2 52 0 3309 120 36 13 chr11 121064216 121064765 -29718788 - L1PA16 LINE L1 -9 6157 5596 6743 65 9 1 chr11 121064765 121065943 -29717610 + L1PA7 LINE L1 4958 6144 -10 2306 170 15 7 chr11 121065952 121066513 -29717040 - L1PA16 LINE L1 -565 5601 5030 2339 88 0 13 chr11 121066513 121066819 -29716734 - AluSc SINE Alu -7 302 1 2306 170 15 7 chr11 121066819 121067050 -29716503 - L1PA16 LINE L1 -1136 5030 4802 1810 75 0 0 chr11 121067054 121067294 -29716259 + L1PA7 LINE L1 5753 5992 -162 1081 194 0 66 chr11 121067290 121067579 -29715974 - L1PA16 LINE L1 -1343 4803 4534 * 2138 215 17 6 chr11 121067577 121068117 -29715436 + L1PA16 LINE L1 3988 4533 -1613 278 213 53 13 chr11 121069274 121069349 -29714204 - MIR3 SINE MIR -27 181 104 255 340 72 0 chr11 121069383 121069480 -29714073 + MIR SINE MIR 8 111 -151 24 32 0 0 chr11 121069564 121069595 -29713958 + AT_rich Low_complexity Low_complexity 1 31 0 2294 125 0 0 chr11 121069679 121069990 -29713563 - AluSx SINE Alu -1 311 1 253 294 165 28 chr11 121070621 121070730 -29712823 + L2 LINE L2 3190 3313 0 763 271 65 24 chr11 121071644 121071935 -29711618 + L2 LINE L2 3011 3313 0 346 175 49 70 chr11 121073273 121073416 -29710137 - Charlie5 DNA MER1_type -117 2495 2356 847 62 31 0 chr11 121073417 121073546 -29710007 + L1P LINE L1 5285 5417 -746 272 291 143 11 chr11 121074304 121074479 -29709074 + LTR16A1 LTR ERVL 191 388 -69 800 269 47 0 chr11 121075339 121075532 -29708021 + MIR SINE MIR 60 261 -1 1961 121 24 3 chr11 121076800 121077098 -29706455 + L1PB1 LINE L1 5846 6149 -2 3212 158 47 10 chr11 121077167 121077782 -29705771 - L1MA6 LINE L1 -4 6296 5659 1330 168 4 0 chr11 121077782 121078026 -29705527 + L1MA6 LINE L1 5412 5656 -644 240 242 167 8 chr11 121078302 121078434 -29705119 - MER103 DNA DNA -3 163 11 317 330 123 25 chr11 121079890 121080093 -29703460 - MIR SINE MIR -6 256 34 2293 120 24 24 chr11 121080807 121081182 -29702371 - THE1C LTR MaLR 0 375 1 2333 193 22 109 chr11 121081378 121081754 -29701799 - MER77 LTR ERV1 -13 592 295 2465 108 63 31 chr11 121081754 121082169 -29701384 - MSTA LTR MaLR 0 428 1 2333 193 22 109 chr11 121082169 121082441 -29701112 - MER77 LTR ERV1 -310 295 1 724 273 168 45 chr11 121083015 121083227 -29700326 + MLT1I LTR MaLR 12 197 -212 2004 118 11 7 chr11 121083227 121083507 -29700046 + AluSq SINE Alu 1 281 -32 252 0 0 0 chr11 121083507 121083535 -29700018 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 724 273 168 45 chr11 121083535 121083655 -29699898 + MLT1I LTR MaLR 196 386 -23 2790 164 2 6 chr11 121084030 121084498 -29699055 - MLT1C LTR MaLR 0 467 2 2222 129 3 0 chr11 121084699 121085002 -29698551 + AluSx SINE Alu 1 304 -8 237 232 72 14 chr11 121085156 121085225 -29698328 - MIR SINE MIR -66 196 124 1320 172 0 104 chr11 121085627 121085964 -29697589 + MLT1B LTR MaLR 30 331 -59 900 62 0 0 chr11 121085964 121086077 -29697476 + AluSg/x SINE Alu 189 301 -11 462 62 15 0 chr11 121086080 121086145 -29697408 + MLT1B LTR MaLR 325 390 0 198 0 0 0 chr11 121086223 121086245 -29697308 + (T)n Simple_repeat Simple_repeat 1 22 0 914 290 36 4 chr11 121086759 121087007 -29696546 + MIR SINE MIR 6 261 -1 25 0 0 0 chr11 121087295 121087320 -29696233 + AT_rich Low_complexity Low_complexity 1 25 0 288 0 0 0 chr11 121087672 121087704 -29695849 + (CA)n Simple_repeat Simple_repeat 1 32 0 473 287 62 74 chr11 121087949 121088207 -29695346 - MIR SINE MIR -1 261 7 203 310 183 11 chr11 121088223 121088507 -29695046 + L2 LINE L2 2639 2971 -343 410 292 75 31 chr11 121088618 121088779 -29694774 - MIR SINE MIR -90 172 5 226 268 70 0 chr11 121089327 121089398 -29694155 - MLT1K LTR MaLR -2 586 511 273 327 80 18 chr11 121090201 121090314 -29693239 - MIR3 SINE MIR -74 134 15 510 261 76 0 chr11 121090471 121090590 -29692963 + MIR SINE MIR 17 144 -118 289 283 35 26 chr11 121090692 121090805 -29692748 + MIR SINE MIR 148 261 -1 432 293 33 76 chr11 121091202 121091470 -29692083 - MIR3 SINE MIR -6 256 14 234 279 126 45 chr11 121091678 121091789 -29691764 + L2 LINE L2 3148 3267 -5 443 268 110 6 chr11 121091893 121092057 -29691496 + MIR SINE MIR 61 241 -21 196 191 48 0 chr11 121093283 121093325 -29690228 - MIR SINE MIR -116 146 103 430 310 49 43 chr11 121096168 121096278 -29687275 - MIR SINE MIR -4 258 145 2246 74 37 3 chr11 121096278 121096574 -29686979 - AluY SINE Alu -5 306 1 430 310 49 43 chr11 121096574 121096647 -29686906 - MIR SINE MIR -117 145 74 1312 152 4 0 chr11 121096695 121096925 -29686628 + L1MB3 LINE L1 5546 5776 -407 8722 135 25 12 chr11 121096954 121098460 -29685093 + Tigger4(Zombi) DNA MER2_type 19 1543 -1188 3009 91 25 201 chr11 121098470 121098892 -29684661 + Tigger4(Zombi) DNA MER2_type 2082 2304 -427 1078 134 65 0 chr11 121098892 121099078 -29684475 - L1PB4 LINE L1 -1 6155 5958 3009 91 25 201 chr11 121099078 121099443 -29684110 + Tigger4(Zombi) DNA MER2_type 2304 2731 0 674 113 104 0 chr11 121099457 121099572 -29683981 + L1MB3 LINE L1 5796 5922 -261 1398 175 7 7 chr11 121099625 121099899 -29683654 + L1MB3 LINE L1 5908 6181 -2 1689 189 13 70 chr11 121099938 121100325 -29683228 - MLT1A1 LTR MaLR 0 365 1 387 267 166 37 chr11 121100341 121100667 -29682886 + MLT1J2 LTR MaLR 59 426 -24 31 0 0 0 chr11 121101579 121101610 -29681943 + AT_rich Low_complexity Low_complexity 1 31 0 5105 200 60 48 chr11 121102694 121104132 -29679421 - Charlie1a DNA MER1_type 0 1455 1 748 247 23 0 chr11 121104140 121104314 -29679239 + MER5B DNA MER1_type 1 178 0 670 237 74 21 chr11 121104585 121104775 -29678778 + MIR SINE MIR 61 260 -2 303 274 94 0 chr11 121104894 121104993 -29678560 + MIR SINE MIR 56 163 -45 219 43 21 64 chr11 121105624 121105671 -29677882 + (TTA)n Simple_repeat Simple_repeat 2 46 0 363 328 41 8 chr11 121105675 121105797 -29677756 - MIR SINE MIR -106 156 31 2701 118 7 20 chr11 121106195 121106635 -29676918 - L1PB1 LINE L1 0 6151 5718 406 277 48 37 chr11 121107028 121107299 -29676254 - L1ME4a LINE L1 -220 5901 5628 1886 201 70 40 chr11 121107880 121108383 -29675170 - MER21B LTR ERV1 -19 844 327 2284 258 22 64 chr11 121108668 121109665 -29673888 + L1ME3 LINE L1 32 986 -5410 2608 104 3 3 chr11 121109706 121110061 -29673492 - THE1A LTR MaLR 0 355 1 11125 113 8 0 chr11 121110061 121111627 -29671926 - THE1A-int LTR MaLR 0 1580 1 2205 98 86 0 chr11 121111627 121111954 -29671599 - THE1A LTR MaLR 0 355 1 1897 201 102 0 chr11 121111954 121112356 -29671197 + L1MD2 LINE L1 5441 5883 -476 * 3885 246 80 46 chr11 121112352 121113028 -29670525 + L1ME3 LINE L1 3579 4231 -2000 1571 171 52 0 chr11 121113028 121113314 -29670239 + AluJo SINE Alu 1 301 -11 3885 246 80 46 chr11 121113314 121115198 -29668355 + L1ME3 LINE L1 4231 6225 -6 496 250 7 62 chr11 121115297 121115441 -29668112 + MLT1F1 LTR MaLR 1 136 -431 192 77 0 0 chr11 121115481 121115507 -29668046 + (TC)n Simple_repeat Simple_repeat 1 26 0 1233 237 145 63 chr11 121115639 121116213 -29667340 - MLT1E3 LTR MaLR -3 621 1 528 273 35 21 chr11 121116764 121116907 -29666646 - MIR SINE MIR -32 230 86 197 309 55 55 chr11 121117441 121117551 -29666002 + MIR SINE MIR 37 146 -62 301 320 58 0 chr11 121117597 121117700 -29665853 - L2 LINE L2 0 3272 3164 243 0 0 0 chr11 121117959 121117986 -29665567 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 216 97 0 0 chr11 121120266 121120297 -29663256 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 1253 264 67 42 chr11 121120299 121120930 -29662623 - L2 LINE L2 -1 3312 2662 620 266 47 6 chr11 121121224 121121393 -29662160 + MER5B DNA MER1_type 3 178 0 223 296 52 67 chr11 121123217 121123352 -29660201 - MER5B DNA MER1_type -17 161 29 2219 102 3 0 chr11 121123940 121124233 -29659320 + AluSq SINE Alu 1 294 -19 266 270 81 18 chr11 121125259 121125370 -29658183 - MLT1H LTR MaLR -1 548 431 480 279 177 15 chr11 121125791 121126124 -29657429 + L1ME4a LINE L1 5634 6020 -101 1298 227 104 15 chr11 121126154 121126489 -29657064 + MLT1A1 LTR MaLR 1 365 0 287 191 132 15 chr11 121126623 121126691 -29656862 + MLT1J1 LTR MaLR 196 271 -175 347 256 8 33 chr11 121126702 121126823 -29656730 + MLT1J2 LTR MaLR 333 450 0 244 182 250 68 chr11 121127185 121127273 -29656280 + MIR SINE MIR 90 193 -69 192 40 0 0 chr11 121127990 121128015 -29655538 + (CA)n Simple_repeat Simple_repeat 1 25 0 189 338 0 0 chr11 121128969 121129040 -29654513 - MIR SINE MIR -8 254 184 437 341 103 9 chr11 121129242 121129465 -29654088 - MIR SINE MIR -15 247 4 373 297 245 38 chr11 121130824 121131248 -29652305 - L2 LINE L2 -1218 2096 1585 206 274 32 16 chr11 121131293 121131355 -29652198 - MIR SINE MIR -101 107 45 1760 168 35 32 chr11 121133484 121133858 -29649695 + THE1C LTR MaLR 1 375 0 348 292 23 62 chr11 121134528 121134658 -29648895 + MER117 DNA MER1_type 1 125 -72 2265 165 44 2 chr11 121135740 121136171 -29647382 + L1PA16 LINE L1 5710 6158 -8 1365 182 4 12 chr11 121136507 121136749 -29646804 + AluJo SINE Alu 41 280 -32 198 103 0 0 chr11 121136749 121136778 -29646775 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 287 281 53 9 chr11 121137491 121137605 -29645948 - MIR SINE MIR -65 143 25 437 295 17 52 chr11 121138028 121138201 -29645352 - MIR SINE MIR -67 195 29 269 51 26 0 chr11 121138645 121138684 -29644869 + (TG)n Simple_repeat Simple_repeat 1 40 0 2177 111 3 3 chr11 121139377 121139683 -29643870 + AluSq SINE Alu 1 306 -7 2291 115 0 0 chr11 121139834 121140138 -29643415 + AluSx SINE Alu 1 304 -8 26 0 0 0 chr11 121140167 121140193 -29643360 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr11 121140293 121140316 -29643237 + (A)n Simple_repeat Simple_repeat 1 23 0 405 0 0 0 chr11 121140351 121140396 -29643157 + (TAA)n Simple_repeat Simple_repeat 1 45 0 265 161 107 0 chr11 121141022 121141078 -29642475 - MLT1K LTR MaLR -14 574 513 769 254 40 73 chr11 121141089 121141364 -29642189 + MLT1G LTR MaLR 1 266 -329 553 244 0 9 chr11 121141364 121141479 -29642074 - MER81 DNA DNA 0 114 1 * 850 241 99 11 chr11 121141479 121141735 -29641818 + MLT1G LTR MaLR 246 524 -66 1066 118 70 5 chr11 121141751 121141937 -29641616 - L1MA7 LINE L1 -23 6268 6071 297 114 0 0 chr11 121141937 121141981 -29641572 + MLT1G LTR MaLR 524 567 0 216 0 0 0 chr11 121142012 121142036 -29641517 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1330 155 61 49 chr11 121142049 121142313 -29641240 - AluJo SINE Alu -45 267 1 224 346 26 0 chr11 121142747 121142825 -29640728 + MER5A DNA MER1_type 58 137 -52 793 296 144 9 chr11 121143293 121143815 -29639738 + L2 LINE L2 2588 3313 0 273 105 0 0 chr11 121145011 121145049 -29638504 + tRNA-Lys-AAG tRNA tRNA 1 38 -38 280 292 37 38 chr11 121145093 121145239 -29638314 - MER5B DNA MER1_type -18 171 19 230 106 21 0 chr11 121145255 121145302 -29638251 + (TA)n Simple_repeat Simple_repeat 2 49 0 2300 61 7 7 chr11 121145517 121145812 -29637741 - AluY SINE Alu -11 300 6 325 128 0 0 chr11 121145893 121145940 -29637613 - Alu SINE Alu -11 291 245 318 266 131 72 chr11 121145949 121146088 -29637465 + HAL1 LINE L1 2161 2290 -217 2387 88 0 3 chr11 121146088 121146394 -29637159 + AluY SINE Alu 1 305 -6 318 266 131 72 chr11 121146394 121146544 -29637009 + HAL1 LINE L1 2290 2467 -40 1366 288 45 5 chr11 121146561 121147005 -29636548 + L1ME1 LINE L1 41 502 -5894 296 250 33 22 chr11 121147009 121147101 -29636452 + L1ME1 LINE L1 4166 4258 -1957 569 206 0 26 chr11 121147102 121147336 -29636217 + GA-rich Low_complexity Low_complexity 1 228 0 195 162 0 0 chr11 121147359 121147396 -29636157 + GA-rich Low_complexity Low_complexity 2 38 0 2699 231 56 14 chr11 121147498 121148804 -29634749 + L1ME1 LINE L1 4243 5675 -560 1475 204 50 32 chr11 121148804 121149143 -29634410 - MLT1A1 LTR MaLR -20 345 1 1758 196 58 13 chr11 121149143 121149520 -29634033 + L1ME1 LINE L1 5676 6069 -166 1758 203 45 70 chr11 121149520 121149978 -29633575 + MLT2B1 LTR ERVL 1 346 -68 405 0 0 0 chr11 121149978 121150023 -29633530 + (TG)n Simple_repeat Simple_repeat 2 46 0 1758 203 45 70 chr11 121150023 121150059 -29633494 + MLT2B1 LTR ERVL 346 381 -33 554 253 31 0 chr11 121150062 121150224 -29633329 + L1MA10 LINE L1 5986 6315 -10 49 0 0 0 chr11 121150245 121150294 -29633259 + AT_rich Low_complexity Low_complexity 1 49 0 382 355 18 23 chr11 121150561 121150781 -29632772 + MIR SINE MIR 29 247 -15 217 150 33 50 chr11 121151966 121152026 -29631527 + (TAAA)n Simple_repeat Simple_repeat 1 59 0 185 352 110 22 chr11 121152211 121152302 -29631251 - L2 LINE L2 -24 3248 3150 202 266 53 71 chr11 121152767 121152880 -29630673 + L2 LINE L2 3103 3213 -100 295 322 42 42 chr11 121153625 121153743 -29629810 + L2 LINE L2 3146 3263 -9 1082 322 24 59 chr11 121153758 121154272 -29629281 + L3 LINE CR1 585 1081 -496 2016 81 0 4 chr11 121154272 121154520 -29629033 - AluSq SINE Alu -33 280 34 1082 322 24 59 chr11 121154520 121154545 -29629008 + L3 LINE CR1 1081 1105 -472 434 227 0 0 chr11 121154604 121154692 -29628861 - MER5A DNA MER1_type -90 99 12 620 376 45 5 chr11 121154747 121155151 -29628402 + L3 LINE CR1 1155 1574 -3 220 354 122 14 chr11 121155467 121155614 -29627939 + L3b LINE CR1 1398 1560 -23 304 337 0 0 chr11 121156338 121156427 -29627126 - MIR SINE MIR -118 144 56 378 322 78 6 chr11 121156639 121156819 -29626734 - MIR SINE MIR -14 248 56 244 287 13 120 chr11 121157293 121157443 -29626110 + MIR SINE MIR 79 212 -50 1303 212 27 27 chr11 121157614 121158027 -29625526 + MLT2B1 LTR ERVL 1 458 -57 286 208 139 0 chr11 121158101 121158173 -29625380 + MIR SINE MIR 73 154 -108 3363 134 21 4 chr11 121159553 121160112 -29623441 + L1PB4 LINE L1 5586 6154 -2 260 146 21 0 chr11 121160128 121160176 -29623377 - Tigger1 DNA MER2_type -518 1900 1852 660 92 0 0 chr11 121160177 121160275 -29623278 + AluSp/q SINE Alu 214 311 -2 10327 124 20 54 chr11 121160275 121162139 -29621414 - Tigger1 DNA MER2_type -583 1835 35 909 153 11 21 chr11 121163153 121163342 -29620211 + L1MB3 LINE L1 5995 6181 -2 428 302 20 50 chr11 121163451 121163653 -29619900 + MIR SINE MIR 17 212 -50 214 377 8 39 chr11 121163809 121163939 -29619614 - L2 LINE L2 -10 3262 3137 522 279 129 10 chr11 121164068 121164269 -29619284 + MIR SINE MIR 24 248 -14 366 321 119 6 chr11 121164270 121164429 -29619124 - MIR SINE MIR -65 197 21 442 298 35 66 chr11 121164619 121164817 -29618736 - MIR SINE MIR -56 206 15 2168 122 0 0 chr11 121167236 121167532 -29616021 + AluSx SINE Alu 1 296 -16 248 278 0 0 chr11 121167559 121167613 -29615940 - L2 LINE L2 -18 3295 3242 612 316 55 0 chr11 121168673 121168891 -29614662 + MER102a DNA MER1_type 101 330 0 512 335 102 4 chr11 121170696 121170932 -29612621 + MIR SINE MIR 3 261 -1 966 263 153 18 chr11 121172391 121173169 -29610384 - L2 LINE L2 0 3313 2432 1311 62 6 0 chr11 121173178 121173339 -29610214 - AluY SINE Alu -12 299 138 300 120 0 0 chr11 121174285 121174335 -29609218 + (CA)n Simple_repeat Simple_repeat 2 51 0 1455 184 27 0 chr11 121175446 121175740 -29607813 + L1MB4 LINE L1 5873 6174 -6 309 295 75 17 chr11 121176045 121176218 -29607335 - HAL1 LINE L1 -96 2411 2229 366 65 0 252 chr11 121176742 121176807 -29606746 - MADE1 DNA Mariner 0 80 51 1811 123 72 11 chr11 121176807 121177084 -29606469 + AluSx SINE Alu 2 295 -17 366 65 0 252 chr11 121177084 121177125 -29606428 - MADE1 DNA Mariner -29 51 1 675 37 0 0 chr11 121177129 121177211 -29606342 + (TTGG)n Simple_repeat Simple_repeat 2 83 0 7365 165 24 38 chr11 121177601 121179899 -29603654 + L1MA8 LINE L1 3943 6200 -91 308 241 0 51 chr11 121180776 121180855 -29602698 + L1MEd LINE L1 614 688 -5431 2194 229 45 30 chr11 121180922 121180997 -29602556 + L1ME2 LINE L1 5513 5585 -579 2592 54 0 6 chr11 121180997 121181310 -29602243 - AluY SINE Alu 0 311 1 2194 229 45 30 chr11 121181310 121181827 -29601726 + L1ME2 LINE L1 5585 6114 -50 219 309 0 29 chr11 121182779 121182847 -29600706 - MIR SINE MIR -193 69 4 361 255 130 84 chr11 121183439 121183878 -29599675 + MLT1I LTR MaLR 68 541 -8 356 225 92 14 chr11 121183878 121184020 -29599533 - L1ME4a LINE L1 -9 6112 5960 23919 28 0 2 chr11 121184108 121187743 -29595810 - L1PA2 LINE L1 0 6155 2524 222 156 0 0 chr11 121187762 121187807 -29595746 + CT-rich Low_complexity Low_complexity 1 45 0 182 259 99 25 chr11 121190160 121190241 -29593312 - MIR SINE MIR -65 197 111 1385 237 13 35 chr11 121190241 121190613 -29592940 + MLT1A2 LTR MaLR 1 364 -10 4696 109 14 1 chr11 121191420 121192115 -29591438 + L1PA14 LINE L1 5455 6158 -3 561 246 60 25 chr11 121192978 121193177 -29590376 + MIR SINE MIR 57 262 0 260 270 127 48 chr11 121193187 121193313 -29590240 + L2 LINE L2 3102 3237 -35 206 232 36 0 chr11 121193313 121193369 -29590184 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 2029 112 60 0 chr11 121193947 121194232 -29589321 + AluY SINE Alu 1 302 -9 277 128 0 0 chr11 121195273 121195312 -29588241 - U6 snRNA snRNA -67 40 2 255 146 0 42 chr11 121195798 121195846 -29587707 - L2 LINE L2 -12 3301 3256 215 327 112 47 chr11 121197371 121197585 -29585968 + MIR SINE MIR 20 247 -15 364 297 229 4 chr11 121200147 121200383 -29583170 + HAL1 LINE L1 404 692 -1815 300 231 231 0 chr11 121200408 121200525 -29583028 + HAL1 LINE L1 733 876 -1631 207 0 0 0 chr11 121200542 121200565 -29582988 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 28 29 0 0 chr11 121200634 121200669 -29582884 + AT_rich Low_complexity Low_complexity 1 35 0 1142 273 153 6 chr11 121200680 121201222 -29582331 + HAL1 LINE L1 1062 1683 -824 1886 125 27 109 chr11 121201223 121201599 -29581954 + THE1B LTR MaLR 20 364 0 234 220 143 110 chr11 121201599 121201634 -29581919 + HAL1 LINE L1 1668 1700 -807 1675 215 122 8 chr11 121201634 121201824 -29581729 + Charlie1b DNA MER1_type 1 168 -2593 1855 144 0 7 chr11 121201824 121202102 -29581451 - AluSx SINE Alu -32 280 5 1675 215 122 8 chr11 121202102 121202380 -29581173 + Charlie1b DNA MER1_type 168 522 -1 234 220 143 110 chr11 121202380 121202435 -29581118 + HAL1 LINE L1 1700 1761 -746 2109 130 3 7 chr11 121202480 121202787 -29580766 + AluSx SINE Alu 1 306 -6 21 0 0 0 chr11 121203270 121203291 -29580262 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 8 0 chr11 121203591 121203651 -29579902 + AT_rich Low_complexity Low_complexity 1 23 0 2158 237 15 53 chr11 121203653 121204685 -29578868 + L1MA7 LINE L1 2277 2980 -4516 4995 189 21 11 chr11 121204688 121205989 -29577564 + L1MA7 LINE L1 6385 7699 -11 723 159 30 0 chr11 121205987 121206119 -29577434 + L1MB1 LINE L1 2879 3014 -4551 * 680 151 0 0 chr11 121206128 121206234 -29577319 + AluJ SINE Alu 17 122 -190 1775 179 0 0 chr11 121206256 121206529 -29577024 + AluSx SINE Alu 1 273 -39 258 156 0 0 chr11 121206530 121206575 -29576978 + GA-rich Low_complexity Low_complexity 6 50 0 915 199 0 45 chr11 121206576 121206659 -29576894 + AluJ SINE Alu 132 217 -95 1986 129 5 69 chr11 121206659 121207038 -29576515 - THE1A LTR MaLR 0 355 1 11521 84 23 5 chr11 121207038 121208590 -29574963 - THE1A-int LTR MaLR 0 1580 1 1733 134 50 59 chr11 121208590 121208948 -29574605 - THE1A LTR MaLR 0 355 1 915 199 0 45 chr11 121208948 121209038 -29574515 + AluJ SINE Alu 214 299 -13 6699 215 39 31 chr11 121209121 121209647 -29573906 + L1MB1 LINE L1 3115 3635 -3930 2291 97 0 0 chr11 121209647 121209937 -29573616 + AluSq SINE Alu 1 290 -23 6699 215 39 31 chr11 121209937 121211656 -29571897 + L1MB1 LINE L1 3635 5397 -2168 644 189 177 6 chr11 121211663 121211827 -29571726 - MER58 DNA MER1_type -2219 201 10 22 0 0 0 chr11 121212619 121212641 -29570912 + AT_rich Low_complexity Low_complexity 1 22 0 2555 173 26 69 chr11 121213628 121213840 -29569713 + L1MB1 LINE L1 5389 5608 -1957 2501 176 14 0 chr11 121213840 121214260 -29569293 - MSTB LTR MaLR 0 426 1 2555 173 26 69 chr11 121214260 121214728 -29568825 + L1MB1 LINE L1 5608 6040 -1525 * 4084 146 23 38 chr11 121214719 121215059 -29568494 - L1MA4 LINE L1 -5 6300 5956 1776 176 0 3 chr11 121215059 121215348 -29568205 - AluJb SINE Alu -24 288 1 4084 146 23 38 chr11 121215348 121216041 -29567512 - L1MA4 LINE L1 -349 5956 5348 * 4730 163 24 53 chr11 121216040 121217654 -29565899 + L1MB1 LINE L1 6024 7587 0 3503 157 62 94 chr11 121217643 121217744 -29565809 + L1MB8 LINE L1 4970 5073 -1105 * 1991 111 0 4 chr11 121217744 121218014 -29565539 + AluSg SINE Alu 21 289 -21 3503 157 62 94 chr11 121218014 121219144 -29564409 + L1MB8 LINE L1 5073 6153 -25 449 237 7 72 chr11 121219190 121219329 -29564224 + MER96 DNA MER1_type? 46 175 0 213 257 81 43 chr11 121219501 121219638 -29563915 - MIR SINE MIR 0 262 33 257 329 110 14 chr11 121221165 121221311 -29562242 - L3 LINE CR1 -91 1486 1327 188 271 35 71 chr11 121221449 121221534 -29562019 + MIR SINE MIR 117 198 -64 1327 280 93 19 chr11 121221748 121221847 -29561706 - L2 LINE L2 -11 3302 3212 1962 152 0 7 chr11 121221847 121222144 -29561409 - AluSx SINE Alu -15 297 3 1327 280 93 19 chr11 121222144 121222811 -29560742 - L2 LINE L2 -101 3212 2421 238 387 96 13 chr11 121222849 121223079 -29560474 - L2 LINE L2 -468 2846 2598 10769 226 27 15 chr11 121223871 121225100 -29558453 - L1MC1 LINE L1 -5 6328 5115 1698 238 6 6 chr11 121225100 121225465 -29558088 - MLT1A1 LTR MaLR 0 365 1 10769 226 27 15 chr11 121225465 121228232 -29555321 - L1MC1 LINE L1 -1218 5115 2281 2007 140 0 13 chr11 121228232 121228540 -29555013 - AluSx SINE Alu -8 304 1 10769 226 27 15 chr11 121228540 121228692 -29554861 - L1MC1 LINE L1 -4052 2281 2132 1934 250 46 68 chr11 121228699 121229598 -29553955 + L1MA8 LINE L1 7 2051 -4979 * 2459 193 54 30 chr11 121229591 121230043 -29553510 + L1MA8 LINE L1 3612 4204 -2902 2112 127 3 3 chr11 121230043 121230342 -29553211 + AluSx SINE Alu 1 299 -13 2459 193 54 30 chr11 121230342 121230618 -29552935 + L1MA8 LINE L1 4204 4472 -2634 * 3244 112 26 7 chr11 121230616 121231154 -29552399 - L1 LINE L1 -1303 4843 4296 3100 176 46 5 chr11 121231155 121231762 -29551791 + L1MA8 LINE L1 4474 5105 -2001 1724 110 0 8 chr11 121231762 121231999 -29551554 + THE1B LTR MaLR 130 364 0 5134 161 29 8 chr11 121232000 121233689 -29549864 + L1MA8 LINE L1 5522 7241 -10 893 223 5 5 chr11 121233757 121233945 -29549608 - L1PB4 LINE L1 -14 6142 5955 1524 226 14 31 chr11 121233979 121234137 -29549416 + L1MB8 LINE L1 5756 5915 -263 2615 138 29 2 chr11 121234137 121234558 -29548995 + MSTB1 LTR MaLR 1 432 0 1524 226 14 31 chr11 121234558 121234823 -29548730 + L1MB8 LINE L1 5915 6172 -6 192 125 0 0 chr11 121234862 121234894 -29548659 + (TC)n Simple_repeat Simple_repeat 2 33 0 198 0 0 0 chr11 121234894 121234916 -29548637 + (CA)n Simple_repeat Simple_repeat 1 22 0 1059 214 131 79 chr11 121235015 121235534 -29548019 - MLT1H1 LTR MaLR 0 555 10 2227 110 0 3 chr11 121235534 121235834 -29547719 - AluSx SINE Alu -13 299 1 379 230 0 0 chr11 121235847 121235921 -29547632 + MER112 DNA MER1_type 186 259 -1 426 246 107 86 chr11 121237215 121237309 -29546244 + MIR SINE MIR 57 148 -114 1338 112 79 5 chr11 121237309 121237523 -29546030 - MER30 DNA MER1_type 0 230 1 426 246 107 86 chr11 121237523 121237615 -29545938 + MIR SINE MIR 148 247 -15 687 322 107 76 chr11 121238100 121238761 -29544792 - L3 LINE CR1 -51 1526 845 391 147 44 0 chr11 121238863 121238931 -29544622 - MLT1A2 LTR MaLR -296 78 8 508 296 53 6 chr11 121239084 121239253 -29544300 + MIR SINE MIR 21 197 -65 431 300 36 54 chr11 121239260 121239483 -29544070 + LTR67 LTR ERVL 2 220 -337 277 233 10 87 chr11 121239568 121239671 -29543882 + LTR67 LTR ERVL 352 446 -111 228 115 76 19 chr11 121239705 121239862 -29543691 + (TA)n Simple_repeat Simple_repeat 1 166 0 22 0 0 0 chr11 121239869 121239891 -29543662 + AT_rich Low_complexity Low_complexity 1 22 0 290 197 76 0 chr11 121239926 121239992 -29543561 + LTR67 LTR ERVL 487 557 0 369 333 68 20 chr11 121240119 121240266 -29543287 + L2 LINE L2 3102 3255 -17 332 343 91 6 chr11 121240278 121240453 -29543100 - L3 LINE CR1 -1034 543 354 183 80 0 0 chr11 121240468 121240493 -29543060 + (CA)n Simple_repeat Simple_repeat 2 26 0 376 291 82 5 chr11 121241043 121241263 -29542290 - L1ME LINE L1 -354 5767 5531 1181 185 27 4 chr11 121241340 121241599 -29541954 - L1MA8 LINE L1 -1 6290 6026 502 310 47 41 chr11 121241693 121242226 -29541327 - L1ME LINE L1 -1313 4833 4298 270 340 55 84 chr11 121242468 121242848 -29540705 + L2 LINE L2 2843 3211 -61 194 438 27 0 chr11 121243003 121243115 -29540438 - L3 LINE CR1 -1439 138 24 23 0 0 0 chr11 121243273 121243296 -29540257 + AT_rich Low_complexity Low_complexity 1 23 0 561 309 88 12 chr11 121243636 121243966 -29539587 + L2 LINE L2 2404 2758 -556 555 301 41 10 chr11 121244072 121244267 -29539286 + MIR SINE MIR 7 206 -56 252 274 12 24 chr11 121245469 121245553 -29538000 + L2 LINE L2 2423 2505 -809 214 167 0 0 chr11 121245558 121245600 -29537953 + (CA)n Simple_repeat Simple_repeat 2 43 0 358 353 86 20 chr11 121245799 121246043 -29537510 + L2 LINE L2 2702 2961 -353 2088 133 0 10 chr11 121246111 121246413 -29537140 + AluSx SINE Alu 1 299 -13 184 261 228 0 chr11 121246437 121246529 -29537024 + L2 LINE L2 3200 3312 -1 191 341 96 43 chr11 121247331 121247539 -29536014 + L2 LINE L2 358 576 -2738 251 315 19 37 chr11 121248350 121248458 -29535095 + MIR3 SINE MIR 1 106 -102 261 0 0 0 chr11 121249012 121249041 -29534512 + (TG)n Simple_repeat Simple_repeat 1 29 0 303 146 0 0 chr11 121249041 121249096 -29534457 + (GA)n Simple_repeat Simple_repeat 2 56 0 180 287 53 75 chr11 121249570 121249664 -29533889 + L2 LINE L2 3219 3310 -3 433 66 11 55 chr11 121249765 121249856 -29533697 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 535 268 71 112 chr11 121250910 121251417 -29532136 + L2 LINE L2 2828 3313 0 239 276 66 13 chr11 121251454 121251530 -29532023 - MIR SINE MIR -109 153 74 449 268 56 14 chr11 121251547 121251689 -29531864 + MIR SINE MIR 45 192 -70 7624 25 3 0 chr11 121252906 121254306 -29529247 - L1PA3 LINE L1 -5 6150 4746 216 286 95 0 chr11 121254359 121254422 -29529131 - L2 LINE L2 0 3313 3245 5019 164 29 15 chr11 121254483 121255441 -29528112 - L1MD1 LINE L1 0 6242 5271 3365 124 8 19 chr11 121255455 121255986 -29527567 - THE1-int LTR MaLR -379 1201 677 2570 239 17 18 chr11 121255999 121256426 -29527127 - L1MD1 LINE L1 -1882 4264 3837 2353 62 0 29 chr11 121256426 121256733 -29526820 - AluY SINE Alu -13 298 1 2570 239 17 18 chr11 121256733 121257015 -29526538 - L1MD1 LINE L1 -2309 3837 3556 684 253 90 3 chr11 121257014 121257303 -29526250 + L1M4 LINE L1 3341 3654 -2492 * 2901 209 89 2 chr11 121257304 121257887 -29525666 + MER21B LTR ERV1 11 644 -219 312 173 53 0 chr11 121257906 121257981 -29525572 - L1MD1 LINE L1 -3135 3011 2933 2249 109 3 43 chr11 121257981 121258349 -29525204 + MER4A LTR ERV1 1 353 -311 415 149 40 0 chr11 121258390 121258464 -29525089 + MER4A LTR ERV1 355 431 -233 390 188 266 39 chr11 121258476 121258630 -29524923 + MER4C LTR ERV1 277 465 0 25 0 0 0 chr11 121258635 121258660 -29524893 + AT_rich Low_complexity Low_complexity 1 25 0 821 250 32 58 chr11 121258667 121258678 -29524875 - L1MD1 LINE L1 -3247 2899 2889 1323 190 94 57 chr11 121258678 121259030 -29524523 - MLT1A1 LTR MaLR 0 365 1 821 250 32 58 chr11 121259030 121259330 -29524223 - L1MD1 LINE L1 -3257 2889 2596 2206 117 3 0 chr11 121259439 121259748 -29523805 - AluSx SINE Alu -2 310 1 2435 207 72 32 chr11 121260538 121261287 -29522266 + LTR1B LTR ERV1 1 772 -13 224 369 71 14 chr11 121261643 121261784 -29521769 - MIR3 SINE MIR -27 181 33 444 236 89 0 chr11 121264287 121264410 -29519143 + MER103 DNA DNA 31 164 -2 1611 165 135 68 chr11 121264425 121264898 -29518655 + MLT1D LTR MaLR 1 505 0 636 241 146 6 chr11 121265205 121265363 -29518190 - MER5A DNA MER1_type 0 189 10 1227 55 0 0 chr11 121265434 121265580 -29517973 + AluY SINE Alu 156 301 -10 21 36 0 0 chr11 121265715 121265743 -29517810 + AT_rich Low_complexity Low_complexity 1 28 0 2455 167 90 19 chr11 121266175 121266696 -29516857 - MER74A LTR ERVL 0 558 1 232 241 0 0 chr11 121266990 121267048 -29516505 + MLT1D-int LTR MaLR 14 71 -1300 1956 182 36 28 chr11 121267277 121267826 -29515727 + MLT2A2 LTR ERVL 1 554 0 35871 90 10 5 chr11 121267826 121273414 -29510139 + HERVL-A2 LTR ERVL 1 5654 0 1721 168 30 87 chr11 121273414 121273989 -29509564 + MLT2A2 LTR ERVL 1 554 0 310 193 11 45 chr11 121274652 121274740 -29508813 + MLT1H LTR MaLR 89 173 -376 313 333 39 26 chr11 121275224 121275380 -29508173 + MIR SINE MIR 105 262 0 273 282 94 50 chr11 121275418 121275688 -29507865 - L1ME LINE L1 -522 5599 5319 517 145 122 0 chr11 121275808 121275939 -29507614 + Charlie5 DNA MER1_type 2438 2584 -28 262 209 45 30 chr11 121278620 121278687 -29504866 - L3 LINE CR1 0 1577 1510 648 90 0 0 chr11 121279180 121279306 -29504247 + AluY SINE Alu 195 320 0 196 376 40 0 chr11 121279888 121279989 -29503564 + L3 LINE CR1 585 689 -888 930 208 0 12 chr11 121280042 121280210 -29503343 - FRAM SINE Alu 0 166 1 190 235 12 71 chr11 121280388 121280473 -29503080 + L2 LINE L2 1135 1214 -2100 437 351 106 23 chr11 121280526 121281045 -29502508 + L2 LINE L2 2004 2565 -749 215 265 20 0 chr11 121281033 121281082 -29502471 + L2 LINE L2 3223 3272 0 * 271 344 122 17 chr11 121281082 121281262 -29502291 - L3 LINE CR1 -1163 414 216 555 286 97 5 chr11 121281884 121282080 -29501473 - MIR SINE MIR -2 260 47 362 287 166 58 chr11 121282224 121282447 -29501106 - Charlie8 DNA MER1_type -68 273 204 1138 145 5 26 chr11 121282447 121282640 -29500913 + MER5A DNA MER1_type 1 189 0 362 287 166 58 chr11 121282640 121282869 -29500684 - Charlie8 DNA MER1_type -137 204 1 4477 124 107 7 chr11 121283138 121283889 -29499664 + LTR1B LTR ERV1 1 826 0 565 340 113 25 chr11 121284115 121284517 -29499036 - L2 LINE L2 -279 2993 2554 2033 145 0 23 chr11 121284875 121285178 -29498375 + AluSx SINE Alu 1 296 -16 375 291 99 0 chr11 121286864 121287005 -29496548 - MIR SINE MIR -50 212 58 286 290 78 8 chr11 121287115 121287257 -29496296 - MIR SINE MIR -63 145 1 24 32 0 0 chr11 121288855 121288886 -29494667 + AT_rich Low_complexity Low_complexity 1 31 0 321 26 0 0 chr11 121289366 121289404 -29494149 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 933 246 21 39 chr11 121289626 121289959 -29493594 + MER46C DNA MER2_type 11 337 -1 398 256 16 89 chr11 121290444 121290635 -29492918 + MER5B DNA MER1_type 2 178 0 267 295 162 38 chr11 121291392 121291602 -29491951 + L2 LINE L2 2997 3232 -81 225 65 0 0 chr11 121291634 121291665 -29491888 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 205 318 114 23 chr11 121291701 121291789 -29491764 + L2 LINE L2 3210 3305 -8 193 306 97 0 chr11 121292590 121292662 -29490891 - L2 LINE L2 -61 3211 3133 1523 184 57 3 chr11 121292736 121293019 -29490534 + AluJb SINE Alu 1 298 -14 412 305 15 35 chr11 121293232 121293429 -29490124 - L2 LINE L2 -455 2859 2667 1566 328 82 24 chr11 121293516 121294595 -29488958 - L2 LINE L2 -37 3276 2130 302 304 144 19 chr11 121294824 121295087 -29488466 - L2 LINE L2 -1033 2281 1986 3360 156 8 7 chr11 121295315 121295930 -29487623 + L1MB2 LINE L1 5534 6149 -22 23 0 0 0 chr11 121295938 121295961 -29487592 + AT_rich Low_complexity Low_complexity 1 23 0 722 167 72 83 chr11 121296893 121297169 -29486384 - L1MC5 LINE L1 -215 7746 7474 378 106 76 0 chr11 121297228 121297294 -29486259 - MLT1B LTR MaLR 0 390 320 417 230 79 24 chr11 121297431 121297557 -29485996 - L2 LINE L2 0 3313 3181 21 0 0 0 chr11 121298097 121298118 -29485435 + AT_rich Low_complexity Low_complexity 1 21 0 2198 229 179 18 chr11 121298680 121299422 -29484131 + L2 LINE L2 1590 2451 -863 1248 263 50 3 chr11 121299506 121299863 -29483690 + ERVL LTR ERVL 1839 2212 -3552 1008 224 80 0 chr11 121299869 121300106 -29483447 + MIR SINE MIR 2 257 -5 485 303 0 7 chr11 121300116 121300261 -29483292 + L2 LINE L2 2460 2603 -711 803 273 72 18 chr11 121300262 121300634 -29482919 + L2 LINE L2 2775 3172 -141 261 294 0 0 chr11 121300666 121300734 -29482819 + MLT1J2 LTR MaLR 264 331 -119 302 277 49 36 chr11 121301256 121301480 -29482073 + HAL1 LINE L1 1139 1365 -1142 200 162 54 0 chr11 121302610 121302647 -29480906 + GA-rich Low_complexity Low_complexity 2 40 0 1150 87 0 69 chr11 121302841 121303014 -29480539 - AluSg/x SINE Alu -14 296 136 2259 90 3 26 chr11 121303019 121303329 -29480224 - AluSx SINE Alu -9 303 1 221 222 19 19 chr11 121303862 121303916 -29479637 - MIR SINE MIR -5 257 204 1672 176 10 21 chr11 121303938 121304228 -29479325 - AluJb SINE Alu -25 287 1 335 323 30 15 chr11 121305397 121305530 -29478023 + MIR SINE MIR 47 181 -81 442 326 70 52 chr11 121308203 121308274 -29475279 + HAL1b LINE L1 429 497 -851 1682 152 34 10 chr11 121308274 121308570 -29474983 - AluJb SINE Alu -9 303 1 442 326 70 52 chr11 121308570 121308842 -29474711 + HAL1b LINE L1 497 778 -570 2329 122 112 7 chr11 121309284 121309702 -29473851 - Tigger3b DNA MER2_type 0 1231 770 4372 129 13 50 chr11 121309706 121310490 -29473063 - L1PA15 LINE L1 -2 6163 5409 4690 189 13 19 chr11 121310497 121311544 -29472009 + L1PA15 LINE L1 4351 5391 -755 3923 134 47 23 chr11 121311548 121312294 -29471259 - Tigger3b DNA MER2_type -467 764 1 22 0 0 0 chr11 121312307 121312329 -29471224 + AT_rich Low_complexity Low_complexity 1 22 0 196 164 0 36 chr11 121312329 121312376 -29471177 + (TA)n Simple_repeat Simple_repeat 1 47 -6 2131 109 0 3 chr11 121312376 121312661 -29470892 - AluY SINE Alu -27 284 1 196 164 0 36 chr11 121312661 121312668 -29470885 + (TA)n Simple_repeat Simple_repeat 47 53 0 22 56 0 0 chr11 121312915 121312951 -29470602 + AT_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr11 121313007 121313042 -29470511 + AT_rich Low_complexity Low_complexity 1 35 0 256 287 60 6 chr11 121313068 121313235 -29470318 + L1M4 LINE L1 2691 2866 -3280 251 111 0 22 chr11 121313240 121313285 -29470268 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 355 327 7 13 chr11 121313313 121313466 -29470087 + L1M4 LINE L1 2877 3028 -3118 287 258 0 0 chr11 121313849 121313911 -29469642 - MIR SINE MIR -28 234 173 23 0 0 0 chr11 121314487 121314510 -29469043 + AT_rich Low_complexity Low_complexity 1 23 0 2067 128 3 7 chr11 121315262 121315568 -29467985 + AluSc SINE Alu 1 305 -4 1860 290 57 45 chr11 121316102 121317012 -29466541 + L1ME1 LINE L1 248 1177 -5430 2125 147 0 0 chr11 121317012 121317311 -29466242 - AluSx SINE Alu -13 299 1 1860 290 57 45 chr11 121317311 121317602 -29465951 + L1ME1 LINE L1 1177 1463 -5144 326 280 97 31 chr11 121317593 121317686 -29465867 + L1ME1 LINE L1 1301 1386 -5040 * 378 0 0 0 chr11 121317686 121317728 -29465825 + (CA)n Simple_repeat Simple_repeat 2 43 0 326 280 97 31 chr11 121317728 121317891 -29465662 + L1ME1 LINE L1 1386 1574 -4852 960 249 123 21 chr11 121317895 121318350 -29465203 - MLT1F LTR MaLR -4 538 1 1257 244 70 11 chr11 121318415 121318857 -29464696 + L1ME1 LINE L1 1823 2290 -4317 618 250 5 21 chr11 121318861 121319036 -29464517 + L1ME1 LINE L1 2623 2796 -3630 2101 146 3 0 chr11 121319036 121319344 -29464209 + AluSq SINE Alu 1 309 -4 618 250 5 21 chr11 121319344 121319360 -29464193 + L1ME1 LINE L1 2796 2811 -3615 601 215 30 0 chr11 121319357 121319492 -29464061 + L1ME1 LINE L1 5740 5878 -568 * 2245 136 60 29 chr11 121319498 121319911 -29463642 - MSTB LTR MaLR 0 426 1 2369 143 30 6 chr11 121319922 121320366 -29463187 - MSTB-int LTR MaLR -14 1637 1125 1761 165 47 11 chr11 121320364 121320728 -29462825 - MSTB-int LTR MaLR -1274 377 1 * 2288 148 70 5 chr11 121320728 121321128 -29462425 - MSTB LTR MaLR 0 426 1 775 243 126 11 chr11 121321174 121321437 -29462116 + L1ME1 LINE L1 5912 6204 -240 233 141 203 16 chr11 121321441 121321505 -29462048 + LTR40a LTR ERVL 1 76 -443 589 321 30 22 chr11 121321608 121321876 -29461677 + LTR40a LTR ERVL 124 393 -126 337 208 40 56 chr11 121321995 121322120 -29461433 + L1ME1 LINE L1 6199 6321 -125 260 192 41 14 chr11 121322121 121322194 -29461359 + L1ME1 LINE L1 6366 6440 -6 2184 106 0 7 chr11 121322194 121322486 -29461067 - AluSg SINE Alu -20 290 1 28 0 0 0 chr11 121322486 121322514 -29461039 + AT_rich Low_complexity Low_complexity 1 28 0 1754 151 27 14 chr11 121322784 121323076 -29460477 + AluJo SINE Alu 1 296 -16 2268 116 0 3 chr11 121323076 121323379 -29460174 - AluSq SINE Alu -11 302 1 391 312 143 36 chr11 121324035 121324314 -29459239 + L2 LINE L2 3005 3313 0 26 0 0 0 chr11 121324371 121324397 -29459156 + AT_rich Low_complexity Low_complexity 1 26 0 430 228 40 40 chr11 121324940 121325041 -29458512 - MIR SINE MIR -81 127 27 2351 136 22 5 chr11 121325415 121325783 -29457770 + THE1C LTR MaLR 2 375 0 600 268 8 128 chr11 121326109 121326228 -29457325 + MIR SINE MIR 9 80 -182 556 173 19 0 chr11 121326228 121326332 -29457221 + L1PB4 LINE L1 6042 6147 -9 600 268 8 128 chr11 121326332 121326477 -29457076 + MIR SINE MIR 80 241 -21 2317 91 0 25 chr11 121326529 121326848 -29456705 - AluSq SINE Alu -2 311 1 1961 167 0 3 chr11 121327200 121327500 -29456053 + AluSx SINE Alu 1 299 -13 632 302 116 9 chr11 121327636 121327868 -29455685 - MIR SINE MIR 0 262 6 524 316 18 32 chr11 121328053 121328331 -29455222 + LTR16B LTR ERVL 177 450 -14 990 122 0 0 chr11 121328771 121328902 -29454651 + AluSq/x SINE Alu 1 131 -182 733 148 0 8 chr11 121328902 121329024 -29454529 + AluJb SINE Alu 182 302 -10 492 191 7 14 chr11 121329698 121329839 -29453714 + GA-rich Low_complexity Low_complexity 2 141 0 2337 104 0 0 chr11 121329900 121330198 -29453355 - AluSx SINE Alu -14 298 1 320 341 12 58 chr11 121330346 121330519 -29453034 + L3 LINE CR1 1098 1262 -315 1462 177 4 33 chr11 121331072 121331343 -29452210 - AluJo SINE Alu -31 281 19 757 176 0 0 chr11 121331392 121331511 -29452042 + FRAM SINE Alu 1 117 -59 260 176 47 12 chr11 121331511 121331596 -29451957 + (TA)n Simple_repeat Simple_repeat 1 88 0 402 292 110 19 chr11 121332208 121332362 -29451191 - MIR3 SINE MIR -24 184 17 492 298 38 6 chr11 121332420 121332578 -29450975 + MIR SINE MIR 71 233 -29 328 233 58 19 chr11 121332735 121332838 -29450715 + L1MC4 LINE L1 7934 8040 -2 632 329 79 69 chr11 121333598 121334017 -29449536 - L2 LINE L2 0 3272 2850 517 290 65 6 chr11 121334291 121334460 -29449093 - MIR SINE MIR -77 185 7 350 342 10 42 chr11 121335348 121335541 -29448012 - L3 LINE CR1 -52 1525 1339 231 267 33 0 chr11 121336261 121336321 -29447232 + MIR SINE MIR 63 124 -138 1985 284 133 31 chr11 121339050 121339322 -29444231 + L2 LINE L2 2196 2439 -874 2028 132 13 13 chr11 121339322 121339625 -29443928 - AluSx SINE Alu -9 303 1 1985 284 133 31 chr11 121339625 121340211 -29443342 + L2 LINE L2 2439 3164 -149 2073 87 69 0 chr11 121340211 121340487 -29443066 + AluSx SINE Alu 1 295 -17 1985 284 133 31 chr11 121340487 121340649 -29442904 + L2 LINE L2 3164 3308 -5 535 206 29 44 chr11 121340973 121341109 -29442444 - MIR SINE MIR -21 241 108 624 247 29 6 chr11 121341165 121341339 -29442214 + MER5B DNA MER1_type 1 178 0 311 226 94 55 chr11 121341374 121341555 -29441998 - L1MC5 LINE L1 -747 7214 7027 2279 102 0 3 chr11 121341556 121341850 -29441703 - AluSq SINE Alu -20 293 1 1335 215 118 55 chr11 121342036 121342510 -29441043 - MLT1D LTR MaLR -1 504 1 1364 208 43 53 chr11 121342511 121342929 -29440624 + MLT2D LTR ERVL 1 414 0 1602 116 48 7 chr11 121343070 121343397 -29440156 - Tigger4(Zombi) DNA MER2_type -1 2730 3 387 60 0 0 chr11 121343397 121343447 -29440106 + (TG)n Simple_repeat Simple_repeat 1 50 0 255 61 0 0 chr11 121343834 121343867 -29439686 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2162 113 0 0 chr11 121344537 121344841 -29438712 + AluSx SINE Alu 1 304 0 1449 200 40 43 chr11 121345293 121345668 -29437885 - MLT1A2 LTR MaLR 0 374 1 198 0 0 0 chr11 121345748 121345770 -29437783 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 466 256 86 8 chr11 121345897 121346014 -29437539 + L2 LINE L2 3187 3312 -1 224 264 139 0 chr11 121346762 121346834 -29436719 - MIR3 SINE MIR -40 168 87 353 275 140 30 chr11 121347790 121348119 -29435434 - L2 LINE L2 -225 3088 2683 2035 247 92 18 chr11 121348268 121349212 -29434341 + L1MC4 LINE L1 6744 7896 -146 454 284 82 39 chr11 121349281 121349513 -29434040 - L2 LINE L2 -612 2702 2461 1049 87 17 12 chr11 121349513 121349686 -29433867 + (GGAA)n Simple_repeat Simple_repeat 4 177 0 1498 11 0 11 chr11 121349686 121349868 -29433685 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 278 234 43 53 chr11 121349868 121349962 -29433591 - L2 LINE L2 -833 2481 2389 2608 185 15 0 chr11 121349991 121350462 -29433091 + LTR42 LTR ERVL 18 495 0 804 242 58 38 chr11 121350477 121350717 -29432836 - L2 LINE L2 -930 2384 2140 23 0 0 0 chr11 121350722 121350745 -29432808 + AT_rich Low_complexity Low_complexity 1 23 0 2164 136 7 3 chr11 121350779 121351123 -29432430 + AluSx SINE Alu 1 345 0 3253 149 56 8 chr11 121351123 121351728 -29431825 + L1MC1 LINE L1 5700 6333 0 4197 164 48 31 chr11 121352954 121353111 -29430442 + L1MB3 LINE L1 5024 5177 -1006 1996 161 0 7 chr11 121353111 121353421 -29430132 + AluSq SINE Alu 1 308 -5 4197 164 48 31 chr11 121353421 121354402 -29429151 + L1MB3 LINE L1 5177 6180 -3 2064 139 7 3 chr11 121354410 121354720 -29428833 + AluSx SINE Alu 1 311 -1 23 54 0 0 chr11 121354783 121354820 -29428733 + AT_rich Low_complexity Low_complexity 1 37 0 489 251 44 13 chr11 121354825 121355002 -29428551 + L1ME2 LINE L1 4125 4306 -1840 341 267 139 0 chr11 121356436 121356537 -29427016 + FLAM_A SINE Alu 2 116 -17 226 130 19 19 chr11 121356537 121356591 -29426962 + CT-rich Low_complexity Low_complexity 2 55 0 2676 215 63 49 chr11 121356600 121356859 -29426694 + L1ME2 LINE L1 4454 4708 -1456 2060 133 0 7 chr11 121356859 121357152 -29426401 + AluSx SINE Alu 1 291 -21 2676 215 63 49 chr11 121357152 121358116 -29425437 + L1ME2 LINE L1 4708 5700 -464 2171 121 3 0 chr11 121358116 121358413 -29425140 + AluSx SINE Alu 1 298 -14 2676 215 63 49 chr11 121358413 121358742 -29424811 + L1ME2 LINE L1 5700 6023 -141 563 128 0 49 chr11 121358742 121358844 -29424709 - AluJb SINE Alu -5 307 211 252 275 11 11 chr11 121358844 121358935 -29424618 + L1ME2 LINE L1 6010 6100 -64 706 144 0 54 chr11 121358937 121359183 -29424370 + L1M2 LINE L1 5232 5441 -818 5464 96 167 3 chr11 121359196 121360180 -29423373 - MER11B LTR ERVK 0 1236 1 1809 171 7 7 chr11 121360180 121360478 -29423075 + AluJb SINE Alu 9 306 -6 245 308 75 31 chr11 121360478 121360800 -29422753 + L1MC4a LINE L1 4741 5076 -1070 24 0 0 0 chr11 121360855 121360879 -29422674 + AT_rich Low_complexity Low_complexity 1 24 0 408 330 83 14 chr11 121361073 121361422 -29422131 + L1ME4a LINE L1 5439 5811 -1997 225 134 15 90 chr11 121361556 121361623 -29421930 + L1ME4a LINE L1 5967 6028 -93 256 208 13 78 chr11 121361703 121361727 -29421826 + MER116 DNA Mariner 4 28 -52 3834 118 3 60 chr11 121361727 121362374 -29421179 - MER4B LTR ERV1 0 610 1 256 208 13 78 chr11 121362374 121362426 -29421127 + MER116 DNA Mariner 28 75 -5 1003 196 66 47 chr11 121363196 121363513 -29420040 + L1MC4 LINE L1 7720 8042 0 1295 186 8 32 chr11 121363543 121363790 -29419763 + AluJo SINE Alu 42 282 -30 2456 84 3 0 chr11 121364222 121364531 -29419022 - AluSp SINE Alu -3 310 1 190 294 0 0 chr11 121365428 121365479 -29418074 + L2 LINE L2 3263 3313 0 1146 258 127 39 chr11 121365820 121366389 -29417164 - L2 LINE L2 -1 3312 2680 1312 271 38 0 chr11 121366455 121366802 -29416751 - L2 LINE L2 -1623 1691 1332 1463 118 0 19 chr11 121367439 121367651 -29415902 + AluSg/x SINE Alu 83 290 -20 2037 138 3 0 chr11 121368821 121369118 -29414435 - AluSx SINE Alu -14 298 1 301 168 47 0 chr11 121369333 121369440 -29414113 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 1529 190 0 0 chr11 121369823 121370086 -29413467 + AluJo SINE Alu 1 263 -49 192 77 0 0 chr11 121370090 121370116 -29413437 + (TC)n Simple_repeat Simple_repeat 2 27 0 438 295 50 79 chr11 121371592 121372253 -29411300 + L1MC4a LINE L1 5256 5897 -1911 26 30 0 0 chr11 121372278 121372311 -29411242 + AT_rich Low_complexity Low_complexity 1 33 0 2161 110 0 0 chr11 121372338 121372655 -29410898 + AluSx SINE Alu 1 317 0 2230 129 0 3 chr11 121372715 121373026 -29410527 + AluSx SINE Alu 1 310 -2 214 244 37 0 chr11 121373165 121373247 -29410306 + (TA)n Simple_repeat Simple_repeat 2 86 0 352 270 20 20 chr11 121373248 121373400 -29410153 + HAL1b LINE L1 1189 1340 -8 34 55 0 0 chr11 121373456 121373511 -29410042 + AT_rich Low_complexity Low_complexity 1 55 0 1864 135 21 4 chr11 121373673 121374001 -29409552 - AluSq SINE Alu 0 333 1 718 163 14 48 chr11 121374003 121374150 -29409403 - FLAM_C SINE Alu -1 142 1 367 353 108 59 chr11 121376318 121376513 -29407040 + L2 LINE L2 2844 3028 -244 1864 159 20 23 chr11 121376513 121376814 -29406739 - AluJb SINE Alu -12 300 1 367 353 108 59 chr11 121376814 121377026 -29406527 + L2 LINE L2 3028 3271 -1 920 211 0 0 chr11 121377374 121377530 -29406023 + FRAM SINE Alu 1 156 -10 495 97 53 0 chr11 121377535 121377649 -29405904 + (TA)n Simple_repeat Simple_repeat 2 121 0 303 285 114 73 chr11 121378805 121378928 -29404625 - L2 LINE L2 0 3272 3145 588 318 14 33 chr11 121379466 121379677 -29403876 + MIR SINE MIR 32 238 -24 258 337 148 10 chr11 121379698 121379799 -29403754 + L2 LINE L2 3108 3222 -50 211 265 176 0 chr11 121379981 121380049 -29403504 - L2 LINE L2 0 3313 3234 2482 131 31 24 chr11 121380098 121380324 -29403229 - MSTA LTR MaLR -2 426 194 2259 78 7 0 chr11 121380324 121380607 -29402946 - AluSc SINE Alu -20 289 5 2482 131 31 24 chr11 121380607 121380800 -29402753 - MSTA LTR MaLR -234 194 4 3101 148 32 84 chr11 121380805 121381534 -29402019 - LTR8 LTR ERV1 0 691 1 2006 172 70 2 chr11 121381756 121382157 -29401396 - MSTA LTR MaLR 0 428 1 533 231 213 12 chr11 121382974 121383143 -29400410 + MIR SINE MIR 16 218 -44 223 218 40 109 chr11 121383152 121383253 -29400300 - MIR SINE MIR -36 226 133 27 29 0 0 chr11 121384028 121384062 -29399491 + AT_rich Low_complexity Low_complexity 1 34 0 1026 280 33 70 chr11 121384457 121384968 -29398585 + LTR67 LTR ERVL 1 492 -65 25 75 0 0 chr11 121385030 121385083 -29398470 + AT_rich Low_complexity Low_complexity 1 53 0 2221 123 7 0 chr11 121385472 121385781 -29397772 + AluSx SINE Alu 1 311 -1 941 99 45 29 chr11 121385893 121386082 -29397471 + L1MA8 LINE L1 6095 6298 -2 1873 112 42 28 chr11 121386477 121386764 -29396789 - AluSx SINE Alu -21 291 1 207 342 17 68 chr11 121386791 121386908 -29396645 - MIR SINE MIR -132 130 20 516 273 50 0 chr11 121387447 121387568 -29395985 - MIR SINE MIR -29 233 107 * 542 251 110 21 chr11 121387543 121387734 -29395819 - L2 LINE L2 -695 2619 2412 312 264 0 23 chr11 121387750 121387837 -29395716 + L2 LINE L2 2303 2387 -927 203 340 0 0 chr11 121388004 121388051 -29395502 + L2 LINE L2 3142 3188 -84 211 221 42 63 chr11 121388059 121388154 -29395399 - MIR SINE MIR -8 254 162 366 250 131 0 chr11 121388168 121388252 -29395301 + MIR SINE MIR 38 132 -130 233 356 112 19 chr11 121388260 121388465 -29395088 - L2 LINE L2 -181 3091 2868 441 299 184 69 chr11 121388603 121388995 -29394558 + L2 LINE L2 2867 3303 -10 261 347 124 4 chr11 121389049 121389274 -29394279 - L2 LINE L2 -1059 2255 2004 22 0 0 0 chr11 121389573 121389595 -29393958 + AT_rich Low_complexity Low_complexity 1 22 0 332 310 17 26 chr11 121389730 121389846 -29393707 - L1MC4 LINE L1 -1314 6728 6614 428 269 11 104 chr11 121389930 121390112 -29393441 - L2 LINE L2 -219 3094 2930 1031 115 9 13 chr11 121390217 121391753 -29391800 + HSATII Satellite Satellite 1 1529 0 955 94 8 0 chr11 121392130 121392257 -29391296 - AluYb8 SINE Alu -179 139 12 318 302 129 28 chr11 121392355 121392610 -29390943 + L1ME2 LINE L1 5875 6155 -9 7448 52 27 1 chr11 121393410 121394861 -29388692 + L1PA3 LINE L1 4344 5836 -319 225 200 50 0 chr11 121395003 121395083 -29388470 + (TA)n Simple_repeat Simple_repeat 1 84 0 12462 80 3 0 chr11 121396402 121398149 -29385404 + L1P LINE L1 391 2143 -4003 939 231 52 0 chr11 121400513 121400725 -29382828 - MIR SINE MIR -31 231 9 255 248 73 29 chr11 121401100 121401237 -29382316 - L1ME4a LINE L1 -2 6119 5977 742 288 42 0 chr11 121401605 121401820 -29381733 - MIR SINE MIR -16 246 23 5842 112 60 6 chr11 121401830 121402982 -29380571 + Tigger3b DNA MER2_type 1 1231 0 238 301 126 25 chr11 121403212 121403451 -29380102 - L1ME4a LINE L1 -347 5774 5512 1269 128 0 0 chr11 121403751 121403923 -29379630 + AluSg/x SINE Alu 126 297 -15 215 308 110 33 chr11 121404191 121404282 -29379271 + L2 LINE L2 3199 3296 -17 896 115 8 0 chr11 121404310 121404440 -29379113 - FLAM_C SINE Alu -1 132 2 5440 143 71 39 chr11 121404504 121405645 -29377908 + Tigger1 DNA MER2_type 1 1178 -1240 2349 90 3 0 chr11 121405645 121405945 -29377608 - AluSp SINE Alu -12 301 1 190 294 0 0 chr11 121406840 121406891 -29376662 + L2 LINE L2 3263 3313 0 1135 260 127 39 chr11 121407307 121407876 -29375677 - L2 LINE L2 -1 3312 2680 1312 271 38 0 chr11 121407942 121408289 -29375264 - L2 LINE L2 -1623 1691 1332 1463 118 0 19 chr11 121408928 121409140 -29374413 + AluSg/x SINE Alu 85 292 -20 2048 135 3 0 chr11 121410310 121410607 -29372946 - AluSx SINE Alu -14 298 1 301 168 47 0 chr11 121410822 121410929 -29372624 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 1529 190 0 0 chr11 121411312 121411575 -29371978 + AluJo SINE Alu 1 263 -49 192 77 0 0 chr11 121411579 121411605 -29371948 + (TC)n Simple_repeat Simple_repeat 2 27 0 438 295 50 79 chr11 121413067 121413728 -29369825 + L1MC4a LINE L1 5256 5897 -1911 26 30 0 0 chr11 121413753 121413786 -29369767 + AT_rich Low_complexity Low_complexity 1 33 0 2161 110 0 0 chr11 121413813 121414130 -29369423 + AluSx SINE Alu 1 317 0 2230 129 0 3 chr11 121414190 121414501 -29369052 + AluSx SINE Alu 1 310 -2 214 244 37 0 chr11 121414640 121414722 -29368831 + (TA)n Simple_repeat Simple_repeat 1 85 0 352 270 20 20 chr11 121414723 121414875 -29368678 + HAL1b LINE L1 1189 1340 -8 34 55 0 0 chr11 121414931 121414986 -29368567 + AT_rich Low_complexity Low_complexity 1 55 0 1864 135 21 4 chr11 121415148 121415468 -29368085 - AluSq SINE Alu 0 325 1 718 163 14 48 chr11 121415470 121415617 -29367936 - FLAM_C SINE Alu -1 142 1 367 353 108 59 chr11 121417785 121417980 -29365573 + L2 LINE L2 2844 3028 -244 1864 159 20 23 chr11 121417980 121418281 -29365272 - AluJb SINE Alu -12 300 1 367 353 108 59 chr11 121418281 121418493 -29365060 + L2 LINE L2 3028 3271 -1 920 211 0 0 chr11 121418841 121418997 -29364556 + FRAM SINE Alu 1 156 -10 495 97 53 0 chr11 121419002 121419116 -29364437 + (TA)n Simple_repeat Simple_repeat 2 121 0 303 285 114 73 chr11 121420272 121420395 -29363158 - L2 LINE L2 0 3272 3145 588 318 14 33 chr11 121420933 121421144 -29362409 + MIR SINE MIR 32 238 -24 258 337 148 10 chr11 121421165 121421266 -29362287 + L2 LINE L2 3108 3222 -50 211 265 176 0 chr11 121421448 121421516 -29362037 - L2 LINE L2 0 3313 3234 2482 131 31 24 chr11 121421565 121421791 -29361762 - MSTA LTR MaLR -2 426 194 2248 81 7 0 chr11 121421791 121422074 -29361479 - AluSc SINE Alu -20 289 5 2482 131 31 24 chr11 121422074 121422267 -29361286 - MSTA LTR MaLR -234 194 4 3081 149 32 84 chr11 121422272 121423001 -29360552 - LTR8 LTR ERV1 0 691 1 2006 172 70 2 chr11 121423223 121423624 -29359929 - MSTA LTR MaLR 0 428 1 533 231 213 12 chr11 121424441 121424610 -29358943 + MIR SINE MIR 16 218 -44 223 218 40 109 chr11 121424619 121424720 -29358833 - MIR SINE MIR -36 226 133 27 29 0 0 chr11 121425495 121425529 -29358024 + AT_rich Low_complexity Low_complexity 1 34 0 1026 280 33 70 chr11 121425924 121426435 -29357118 + LTR67 LTR ERVL 1 492 -65 25 75 0 0 chr11 121426497 121426550 -29357003 + AT_rich Low_complexity Low_complexity 1 53 0 2221 123 7 0 chr11 121426939 121427248 -29356305 + AluSx SINE Alu 1 311 -1 941 99 45 29 chr11 121427360 121427549 -29356004 + L1MA8 LINE L1 6095 6298 -2 1873 112 42 28 chr11 121427944 121428231 -29355322 - AluSx SINE Alu -21 291 1 207 342 17 68 chr11 121428258 121428375 -29355178 - MIR SINE MIR -132 130 20 516 273 50 0 chr11 121428914 121429035 -29354518 - MIR SINE MIR -29 233 107 * 542 251 110 21 chr11 121429010 121429201 -29354352 - L2 LINE L2 -695 2619 2412 312 264 0 23 chr11 121429217 121429304 -29354249 + L2 LINE L2 2303 2387 -927 203 340 0 0 chr11 121429471 121429518 -29354035 + L2 LINE L2 3142 3188 -84 211 221 42 63 chr11 121429526 121429621 -29353932 - MIR SINE MIR -8 254 162 366 250 131 0 chr11 121429635 121429719 -29353834 + MIR SINE MIR 38 132 -130 233 356 112 19 chr11 121429727 121429932 -29353621 - L2 LINE L2 -181 3091 2868 441 299 184 69 chr11 121430070 121430462 -29353091 + L2 LINE L2 2867 3303 -10 261 347 124 4 chr11 121430516 121430741 -29352812 - L2 LINE L2 -1059 2255 2004 22 0 0 0 chr11 121431040 121431062 -29352491 + AT_rich Low_complexity Low_complexity 1 22 0 331 330 0 25 chr11 121431197 121431315 -29352238 - L1MC4 LINE L1 -1314 6728 6614 445 299 190 18 chr11 121431399 121431620 -29351933 - L2 LINE L2 -219 3094 2836 235 264 0 0 chr11 121431707 121431760 -29351793 + L2 LINE L2 3220 3272 0 421 258 104 43 chr11 121433711 121433874 -29349679 - L2 LINE L2 -25 3288 3116 637 245 68 15 chr11 121434497 121434739 -29348814 - L1MC4 LINE L1 -345 5819 5680 225 150 50 0 chr11 121435331 121435371 -29348182 + L2 LINE L2 3224 3265 -7 207 69 0 0 chr11 121436274 121436303 -29347250 + (TC)n Simple_repeat Simple_repeat 2 30 0 201 129 0 0 chr11 121437006 121437037 -29346516 + (TC)n Simple_repeat Simple_repeat 2 32 0 759 271 145 5 chr11 121437459 121437680 -29345873 + MIR SINE MIR 10 261 -1 2071 125 3 0 chr11 121438073 121438362 -29345191 + AluSx SINE Alu 1 290 -22 219 303 148 26 chr11 121438867 121439022 -29344531 + MIR SINE MIR 71 244 -18 596 152 9 19 chr11 121439781 121439886 -29343667 - AluSg SINE Alu -206 104 1 7411 117 17 28 chr11 121439899 121441154 -29342399 + Tigger1 DNA MER2_type 1177 2417 -1 464 295 48 6 chr11 121441466 121441632 -29341921 - MIR SINE MIR 0 262 90 2350 60 7 3 chr11 121441640 121441939 -29341614 - AluY SINE Alu -10 301 2 383 61 0 0 chr11 121442054 121442103 -29341450 - Tigger1 DNA MER2_type -637 1781 1733 1420 135 10 111 chr11 121442103 121442400 -29341153 - AluSx SINE Alu -45 267 1 22 0 0 0 chr11 121442548 121442570 -29340983 + AT_rich Low_complexity Low_complexity 1 22 0 478 240 98 54 chr11 121442640 121442844 -29340709 + MIR SINE MIR 17 246 -16 27 0 0 0 chr11 121443169 121443196 -29340357 + AT_rich Low_complexity Low_complexity 1 27 0 250 191 45 135 chr11 121443996 121444023 -29339530 - L1MC4 LINE L1 -542 5579 5551 2570 11 0 0 chr11 121444023 121444340 -29339213 + AluY SINE Alu 1 317 0 250 191 45 135 chr11 121444340 121444400 -29339153 - L1MC4 LINE L1 -570 5551 5499 402 290 9 85 chr11 121444447 121444671 -29338882 + MIR SINE MIR 9 215 -47 1347 183 124 18 chr11 121445415 121445553 -29338000 - AluSg SINE Alu -8 302 180 2412 103 0 6 chr11 121445553 121445864 -29337689 - AluSq SINE Alu -4 309 1 1347 183 124 18 chr11 121445864 121445998 -29337555 - AluSg SINE Alu -130 180 1 1606 174 7 28 chr11 121446003 121446291 -29337262 - AluJb SINE Alu -30 282 1 307 273 79 79 chr11 121446387 121446552 -29337001 - Tigger8 DNA MER2_type -429 237 73 696 291 136 3 chr11 121446644 121446953 -29336600 + L2 LINE L2 2158 2507 -807 305 296 103 36 chr11 121447020 121447243 -29336310 - L1 LINE L1 -2335 3811 3574 247 262 139 12 chr11 121447571 121447895 -29335658 - L1 LINE L1 -2941 3205 2841 1669 172 16 40 chr11 121449576 121449879 -29333674 - AluJb SINE Alu -16 296 1 1806 159 29 0 chr11 121450248 121450524 -29333029 - AluJb SINE Alu -25 287 4 1498 205 98 16 chr11 121451219 121451658 -29331895 + Charlie4a DNA MER1_type 18 492 -16 207 335 181 15 chr11 121451752 121452012 -29331541 + L2 LINE L2 2456 2758 -556 21 0 0 0 chr11 121453056 121453077 -29330476 + AT_rich Low_complexity Low_complexity 1 21 0 1690 170 10 29 chr11 121453127 121453309 -29330244 - AluJo SINE Alu -1 311 127 247 44 44 22 chr11 121453309 121453354 -29330199 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1982 151 0 0 chr11 121453355 121453639 -29329914 - AluSx SINE Alu -28 284 1 1690 170 10 29 chr11 121453639 121453765 -29329788 - AluJo SINE Alu -184 128 7 2296 108 3 13 chr11 121453781 121454096 -29329457 - AluSx SINE Alu 0 312 1 791 216 12 0 chr11 121454730 121454892 -29328661 - MIR SINE MIR -23 239 76 499 215 148 0 chr11 121455523 121455658 -29327895 - MIR SINE MIR -4 258 104 728 188 6 17 chr11 121455672 121455853 -29327700 + (TA)n Simple_repeat Simple_repeat 2 180 0 400 165 22 0 chr11 121455868 121455959 -29327594 + (TA)n Simple_repeat Simple_repeat 1 93 0 311 212 10 81 chr11 121455968 121456067 -29327486 - L1MC4 LINE L1 -1339 6703 6612 402 185 9 19 chr11 121456067 121456175 -29327378 + (TA)n Simple_repeat Simple_repeat 2 108 0 21 0 0 0 chr11 121456312 121456333 -29327220 + AT_rich Low_complexity Low_complexity 1 21 0 2030 138 0 0 chr11 121456549 121456859 -29326694 + AluSx SINE Alu 1 310 0 431 343 82 26 chr11 121456886 121457227 -29326326 + L1M4 LINE L1 4477 4836 -1310 331 187 88 22 chr11 121457242 121457333 -29326220 + L2 LINE L2 2704 2800 -514 438 208 10 10 chr11 121457349 121457445 -29326108 + MER5A DNA MER1_type 14 109 -80 342 289 201 5 chr11 121457428 121457635 -29325918 + L2 LINE L2 2726 2997 -316 * 1702 198 25 11 chr11 121457635 121457994 -29325559 - MLT1A1 LTR MaLR 0 365 2 342 289 201 5 chr11 121457994 121458067 -29325486 + L2 LINE L2 2997 3054 -259 2542 179 28 31 chr11 121458230 121458772 -29324781 + MER82 DNA MER2_type 114 653 0 788 211 26 0 chr11 121459037 121459193 -29324360 + MER5B DNA MER1_type 12 171 -7 395 272 35 0 chr11 121459298 121459412 -29324141 - L2 LINE L2 -2 3311 3194 392 151 86 43 chr11 121460489 121460566 -29322987 - Tigger7 DNA MER2_type -2 2485 2402 1833 163 51 9 chr11 121460566 121460916 -29322637 + MER47A DNA MER2_type 1 365 -1 392 151 86 43 chr11 121460916 121460931 -29322622 - Tigger7 DNA MER2_type -85 2402 2389 1054 190 8 79 chr11 121460948 121461201 -29322352 - Tigger7 DNA MER2_type -498 235 1 209 364 25 25 chr11 121462601 121462719 -29320834 - L2 LINE L2 -217 3055 2938 315 0 0 0 chr11 121463303 121463338 -29320215 + (TG)n Simple_repeat Simple_repeat 1 35 0 2091 115 20 7 chr11 121463339 121463634 -29319919 - AluSx SINE Alu -13 299 1 1923 150 29 16 chr11 121464229 121464535 -29319018 - AluJo SINE Alu 0 312 3 23 68 0 0 chr11 121464898 121464942 -29318611 + AT_rich Low_complexity Low_complexity 1 44 0 2001 138 0 3 chr11 121465630 121465927 -29317626 + AluSx SINE Alu 1 296 -16 189 0 0 0 chr11 121466908 121466929 -29316624 + (A)n Simple_repeat Simple_repeat 1 21 0 2304 118 0 3 chr11 121473222 121473527 -29310026 + AluSx SINE Alu 1 304 -8 371 358 40 17 chr11 121474381 121474557 -29308996 + MIR SINE MIR 3 182 -80 678 181 26 0 chr11 121475991 121476107 -29307446 + AluJb SINE Alu 1 119 -193 40 21 0 0 chr11 121476114 121476161 -29307392 + AT_rich Low_complexity Low_complexity 1 47 0 330 262 84 94 chr11 121476307 121476384 -29307169 + MER5A DNA MER1_type 1 77 -112 1416 171 34 31 chr11 121476384 121476575 -29306978 - MER33 DNA MER1_type -2261 324 130 2024 133 3 7 chr11 121476575 121476876 -29306677 - AluSx SINE Alu -12 300 1 1416 171 34 31 chr11 121476876 121477006 -29306547 - MER33 DNA MER1_type -2455 130 2 330 262 84 94 chr11 121477006 121477119 -29306434 + MER5A DNA MER1_type 77 189 0 180 314 57 38 chr11 121477402 121477507 -29306046 - L2 LINE L2 -566 2748 2642 474 99 0 0 chr11 121477882 121477953 -29305600 - Alu SINE Alu -7 302 232 1666 164 56 0 chr11 121478038 121478325 -29305228 + AluJb SINE Alu 1 303 -9 229 290 48 76 chr11 121478824 121478969 -29304584 - L2 LINE L2 -540 2774 2634 975 179 75 4 chr11 121479724 121479976 -29303577 + MER33 DNA MER1_type 51 320 -4 257 392 70 12 chr11 121481313 121481484 -29302069 + L3b LINE CR1 1363 1543 -40 38 39 0 0 chr11 121481507 121481559 -29301994 + AT_rich Low_complexity Low_complexity 1 52 0 210 118 0 0 chr11 121481687 121481721 -29301832 + (TATATG)n Simple_repeat Simple_repeat 4 37 0 821 118 17 8 chr11 121481722 121481841 -29301712 - FLAM_C SINE Alu -23 120 1 528 278 151 0 chr11 121482314 121482519 -29301034 - MIR SINE MIR -7 255 20 2401 60 0 7 chr11 121484009 121484307 -29299246 - AluY SINE Alu -15 296 1 1569 92 4 9 chr11 121485408 121485637 -29297916 + L1PA8 LINE L1 5932 6159 -13 186 43 0 0 chr11 121485640 121485663 -29297890 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 201 266 0 51 chr11 121486040 121486119 -29297434 + GA-rich Low_complexity Low_complexity 2 76 0 927 278 62 8 chr11 121487431 121488343 -29295210 - L1ME LINE L1 -520 5644 4490 21 71 0 0 chr11 121488617 121488659 -29294894 + AT_rich Low_complexity Low_complexity 1 42 0 256 167 0 0 chr11 121489436 121489478 -29294075 - 5S rRNA rRNA -79 42 1 2145 125 0 0 chr11 121491201 121491505 -29292048 - AluSx SINE Alu -8 304 1 364 292 35 9 chr11 121491633 121491746 -29291807 + MIR SINE MIR 21 136 -72 1889 147 10 3 chr11 121492107 121492400 -29291153 + AluJb SINE Alu 1 295 -17 22 0 0 0 chr11 121492849 121492871 -29290682 + AT_rich Low_complexity Low_complexity 1 22 0 290 229 183 74 chr11 121492944 121493024 -29290529 + L1ME LINE L1 5384 5454 -667 2154 107 0 36 chr11 121493024 121493332 -29290221 + AluSx SINE Alu 1 297 -15 290 229 183 74 chr11 121493332 121493426 -29290127 + L1ME LINE L1 5454 5577 -544 211 205 0 0 chr11 121493708 121493747 -29289806 + (CATA)n Simple_repeat Simple_repeat 2 40 0 284 281 20 26 chr11 121493768 121493921 -29289632 + L1ME4a LINE L1 5959 6110 -11 223 169 46 0 chr11 121494134 121494199 -29289354 + (TA)n Simple_repeat Simple_repeat 1 68 0 324 301 0 0 chr11 121494358 121494431 -29289122 - L2 LINE L2 -1 3271 3199 319 272 61 26 chr11 121494705 121494819 -29288734 - L2 LINE L2 0 3272 3155 2377 88 0 0 chr11 121494918 121495213 -29288340 + AluSg SINE Alu 1 295 -15 235 252 285 20 chr11 121495262 121495413 -29288140 - MIR SINE MIR -9 253 63 189 0 0 0 chr11 121495450 121495471 -29288082 + (T)n Simple_repeat Simple_repeat 1 21 0 1845 148 0 4 chr11 121495774 121496044 -29287509 - AluSx SINE Alu -6 306 38 2325 88 0 0 chr11 121496573 121496869 -29286684 + AluSx SINE Alu 1 296 -16 5941 136 67 32 chr11 121498200 121499170 -29284383 - Tigger3b DNA MER2_type -1798 1230 209 2238 116 0 22 chr11 121499170 121499488 -29284065 - AluSx SINE Alu -1 311 1 5941 136 67 32 chr11 121499488 121499705 -29283848 - Tigger3b DNA MER2_type -2819 209 1 406 271 138 9 chr11 121499945 121500163 -29283390 + L1ME LINE L1 5565 5810 -311 2098 114 3 17 chr11 121500194 121500493 -29283060 + AluSq SINE Alu 2 296 -17 273 272 158 79 chr11 121500985 121501187 -29282366 + MIR SINE MIR 11 228 -34 1949 139 7 7 chr11 121502161 121502456 -29281097 + AluSx SINE Alu 1 295 -17 396 0 0 0 chr11 121507682 121507726 -29275827 + (TG)n Simple_repeat Simple_repeat 2 45 0 889 230 42 18 chr11 121508131 121508348 -29275205 - MER58A DNA MER1_type 0 224 3 2027 67 78 46 chr11 121510392 121510675 -29272878 + AluSx SINE Alu 1 292 -20 191 247 123 37 chr11 121511100 121511181 -29272372 + MIR SINE MIR 91 178 -84 382 269 50 0 chr11 121512181 121512300 -29271253 + MIR SINE MIR 138 262 0 299 268 73 0 chr11 121512970 121513052 -29270501 - MIR SINE MIR -89 173 86 2040 118 76 0 chr11 121514419 121514708 -29268845 - AluSx SINE Alu -1 311 1 960 86 8 0 chr11 121516000 121516128 -29267425 - AluSq/x SINE Alu -183 129 1 185 322 183 0 chr11 121517714 121517829 -29265724 + L2 LINE L2 2569 2704 -610 2079 140 3 0 chr11 121517835 121518121 -29265432 + AluSx SINE Alu 1 287 -25 2406 106 0 0 chr11 121518235 121518546 -29265007 - AluSx SINE Alu -1 311 1 617 60 24 0 chr11 121518999 121519083 -29264470 - AluSg/x SINE Alu -14 298 213 318 317 128 8 chr11 121519087 121519352 -29264201 + L2 LINE L2 2943 3239 -74 2260 94 0 7 chr11 121519509 121519806 -29263747 - AluSg SINE Alu -15 295 1 223 232 131 10 chr11 121520564 121520663 -29262890 + L2 LINE L2 3159 3269 -3 1773 166 3 0 chr11 121520664 121520948 -29262605 + AluJb SINE Alu 1 285 -27 309 299 11 0 chr11 121521264 121521351 -29262202 - MIR SINE MIR -67 141 54 1595 172 19 4 chr11 121521699 121521966 -29261587 - AluJo SINE Alu -39 273 3 548 265 62 6 chr11 121522245 121522407 -29261146 - MER20 DNA MER1_type -21 198 28 375 273 142 16 chr11 121522527 121522710 -29260843 + MLT1J2 LTR MaLR 1 206 -244 305 299 20 20 chr11 121523136 121523283 -29260270 + L1ME3A LINE L1 5870 6016 -154 858 197 28 0 chr11 121523783 121523961 -29259592 + MER5A DNA MER1_type 5 187 -2 8669 172 36 28 chr11 121524776 121526329 -29257224 + L1PA16 LINE L1 1 1565 -5284 2286 73 3 28 chr11 121526330 121526356 -29257197 + L1PB1 LINE L1 5811 5836 -315 2204 109 0 0 chr11 121526356 121526692 -29256861 + AluSq SINE Alu 1 336 0 2286 73 3 28 chr11 121526692 121526981 -29256572 + L1PB1 LINE L1 5836 6119 -32 7941 236 34 28 chr11 121526984 121528146 -29255407 + L1PA16 LINE L1 2473 3627 -3222 2326 96 3 0 chr11 121528146 121528438 -29255115 + AluSp SINE Alu 1 293 -20 7941 236 34 28 chr11 121528438 121528538 -29255015 + L1PA16 LINE L1 3627 3725 -3124 1720 116 11 69 chr11 121528538 121528815 -29254738 + AluSx SINE Alu 37 297 -15 7941 236 34 28 chr11 121528815 121529918 -29253635 + L1PA16 LINE L1 3725 4852 -1997 2185 121 3 7 chr11 121529919 121530224 -29253329 + AluSx SINE Alu 2 305 -7 6192 112 6 10 chr11 121530228 121531889 -29251664 + L1PA16 LINE L1 5191 6869 0 574 255 20 0 chr11 121531999 121532148 -29251405 - MIR3 SINE MIR -23 185 34 1941 113 0 0 chr11 121532607 121532864 -29250689 - AluSq SINE Alu -56 257 1 1828 108 93 4 chr11 121533307 121533608 -29249945 - AluSc SINE Alu 0 309 1 1841 167 0 3 chr11 121535252 121535545 -29248008 - AluJb SINE Alu -20 292 1 1973 139 20 46 chr11 121536766 121537112 -29246441 + MER1B DNA MER1_type 1 337 0 2124 105 20 10 chr11 121537166 121537460 -29246093 - AluSx SINE Alu -15 297 1 324 328 0 16 chr11 121537965 121538090 -29245463 + L3 LINE CR1 1037 1159 -418 2133 95 7 3 chr11 121539265 121539548 -29244005 + AluSp SINE Alu 25 308 -5 1785 146 29 0 chr11 121540093 121540249 -29243304 - AluSx SINE Alu -24 288 119 477 0 0 0 chr11 121540249 121540302 -29243251 + (TG)n Simple_repeat Simple_repeat 2 54 0 1785 146 29 0 chr11 121540302 121540425 -29243128 - AluSx SINE Alu -193 119 1 1979 110 7 14 chr11 121540467 121540749 -29242804 + AluSx SINE Alu 13 292 -20 1223 179 71 88 chr11 121540773 121541069 -29242484 - AluJb SINE Alu -21 291 1 6251 96 37 18 chr11 121541078 121542019 -29241534 + L1MA2 LINE L1 5346 6304 0 25 0 0 0 chr11 121542019 121542044 -29241509 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr11 121542065 121542087 -29241466 + AT_rich Low_complexity Low_complexity 1 22 0 963 172 30 6 chr11 121542233 121542402 -29241151 + AluJb SINE Alu 125 297 -15 1009 273 104 77 chr11 121542407 121542849 -29240704 + L1ME3A LINE L1 4100 4528 -1642 2487 77 6 0 chr11 121542849 121543160 -29240393 - AluSq SINE Alu 0 313 1 1009 273 104 77 chr11 121543160 121544319 -29239234 + L1ME3A LINE L1 4528 5746 -424 2162 132 0 3 chr11 121544319 121544622 -29238931 + AluSx SINE Alu 1 302 -10 1009 273 104 77 chr11 121544622 121544734 -29238819 + L1ME3A LINE L1 5746 5853 -317 784 179 20 61 chr11 121545251 121545311 -29238242 + MER5A DNA MER1_type 2 63 -126 201 39 0 0 chr11 121545311 121545337 -29238216 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 1899 138 0 4 chr11 121545345 121545620 -29237933 - AluSx SINE Alu -38 274 1 784 179 20 61 chr11 121545620 121545746 -29237807 + MER5A DNA MER1_type 70 189 0 1345 199 67 7 chr11 121545898 121546195 -29237358 + MER58B DNA MER1_type 19 333 -8 626 133 30 44 chr11 121546334 121546469 -29237084 - FLAM_C SINE Alu 0 133 1 22 23 0 45 chr11 121547006 121547026 -29236527 + AT_rich Low_complexity Low_complexity 1 20 -22 1929 138 11 0 chr11 121547026 121547309 -29236244 + AluSq SINE Alu 1 286 -27 22 23 0 45 chr11 121547309 121547332 -29236221 + AT_rich Low_complexity Low_complexity 20 42 0 43616 31 22 2 chr11 121547336 121553351 -29230202 + L1PA2 LINE L1 13 6152 -3 34 0 0 0 chr11 121553386 121553420 -29230133 + AT_rich Low_complexity Low_complexity 1 34 0 2103 92 0 11 chr11 121553432 121553762 -29229791 + AluY SINE Alu 5 331 0 427 311 51 11 chr11 121554464 121554641 -29228912 + L2 LINE L2 2782 2965 -349 1772 143 26 42 chr11 121554718 121555025 -29228528 - AluJb SINE Alu -10 302 1 878 142 0 22 chr11 121555025 121555159 -29228394 - AluJo SINE Alu -175 137 7 318 275 72 30 chr11 121555255 121555422 -29228131 + MER102b DNA MER1_type 138 311 -30 192 261 46 0 chr11 121555469 121555534 -29228019 + L2 LINE L2 2997 3064 -249 338 254 0 0 chr11 121555585 121555652 -29227901 - MER116 DNA Mariner -12 68 2 204 238 161 35 chr11 121555663 121555806 -29227747 + L2 LINE L2 3152 3312 -1 311 374 21 21 chr11 121557026 121557216 -29226337 + L2 LINE L2 2902 3091 -181 1870 244 124 25 chr11 121557227 121558337 -29225216 - L2 LINE L2 0 3313 2088 277 279 168 20 chr11 121558623 121558820 -29224733 - MIR SINE MIR -13 249 24 2108 102 56 0 chr11 121558861 121559145 -29224408 - AluSq SINE Alu -13 300 1 189 0 0 0 chr11 121559226 121559247 -29224306 + (A)n Simple_repeat Simple_repeat 1 21 0 2049 143 0 0 chr11 121559663 121559949 -29223604 + AluSx SINE Alu 1 286 -26 396 0 0 0 chr11 121559949 121559993 -29223560 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chr11 121560457 121560485 -29223068 + AT_rich Low_complexity Low_complexity 1 28 0 2171 86 0 14 chr11 121560862 121561142 -29222411 + AluY SINE Alu 1 276 -35 231 36 0 0 chr11 121561149 121561177 -29222376 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 1079 154 5 32 chr11 121561397 121561416 -29222137 + AluSg/x SINE Alu 118 136 -174 2291 93 0 10 chr11 121561416 121561727 -29221826 + AluY SINE Alu 1 308 -3 1079 154 5 32 chr11 121561727 121561895 -29221658 + AluSg/x SINE Alu 136 300 -10 1592 84 183 27 chr11 121562131 121562393 -29221160 + AluSp SINE Alu 1 303 0 28 0 0 0 chr11 121562553 121562581 -29220972 + AT_rich Low_complexity Low_complexity 1 28 0 1756 142 68 0 chr11 121563047 121563328 -29220225 + AluJb SINE Alu 1 300 -12 1115 205 43 5 chr11 121563478 121563688 -29219865 - MER58A DNA MER1_type 0 224 7 1236 174 8 51 chr11 121563879 121564114 -29219439 + AluJo SINE Alu 31 255 -57 219 188 0 0 chr11 121564135 121564183 -29219370 + GA-rich Low_complexity Low_complexity 3 50 0 443 209 70 9 chr11 121564228 121564343 -29219210 + MLT1L LTR MaLR 163 284 -331 518 198 0 0 chr11 121564396 121564492 -29219061 - AluJb SINE Alu -81 231 136 303 228 169 92 chr11 121564538 121564651 -29218902 + MLT1L LTR MaLR 410 544 -71 1381 147 3 127 chr11 121564651 121564815 -29218738 + AluJb SINE Alu 1 101 -211 2242 120 0 0 chr11 121564815 121565115 -29218438 + AluSx SINE Alu 1 300 -12 1381 147 3 127 chr11 121565115 121565296 -29218257 + AluJb SINE Alu 101 303 -9 303 228 169 92 chr11 121565296 121565366 -29218187 + MLT1L LTR MaLR 544 607 -8 21 0 0 0 chr11 121565447 121565468 -29218085 + AT_rich Low_complexity Low_complexity 1 21 0 232 178 22 0 chr11 121565640 121565685 -29217868 - MER58B DNA MER1_type -1 340 295 1970 103 4 4 chr11 121566916 121567189 -29216364 + AluSx SINE Alu 1 273 -39 202 253 120 0 chr11 121567581 121567656 -29215897 - L2 LINE L2 -3 3310 3227 21 0 0 0 chr11 121568299 121568320 -29215233 + AT_rich Low_complexity Low_complexity 1 21 0 376 242 109 16 chr11 121568523 121568538 -29215015 + L1ME3A LINE L1 5714 5726 -444 2148 135 0 3 chr11 121568538 121568841 -29214712 + AluSx SINE Alu 1 302 -10 376 242 109 16 chr11 121568841 121568953 -29214600 + L1ME3A LINE L1 5726 5853 -317 771 179 20 61 chr11 121569470 121569530 -29214023 + MER5A DNA MER1_type 2 63 -126 201 39 0 0 chr11 121569530 121569556 -29213997 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 1899 138 0 4 chr11 121569564 121569839 -29213714 - AluSx SINE Alu -38 274 1 771 179 20 61 chr11 121569839 121569965 -29213588 + MER5A DNA MER1_type 70 189 0 1328 199 67 7 chr11 121570117 121570414 -29213139 + MER58B DNA MER1_type 19 333 -8 877 98 30 15 chr11 121570553 121570685 -29212868 - FLAM_C SINE Alu -9 134 1 22 23 0 45 chr11 121571222 121571242 -29212311 + AT_rich Low_complexity Low_complexity 1 20 -22 1919 138 11 0 chr11 121571242 121571525 -29212028 + AluSq SINE Alu 1 286 -27 22 23 0 45 chr11 121571525 121571548 -29212005 + AT_rich Low_complexity Low_complexity 20 42 0 42677 31 22 2 chr11 121571552 121577567 -29205986 + L1PA2 LINE L1 13 6152 -3 189 0 0 0 chr11 121577615 121577636 -29205917 + (TA)n Simple_repeat Simple_repeat 1 21 0 2183 87 0 11 chr11 121577644 121577978 -29205575 + AluY SINE Alu 1 331 0 471 311 51 11 chr11 121578680 121578857 -29204696 + L2 LINE L2 2782 2965 -349 1786 143 23 40 chr11 121578943 121579243 -29204310 - AluJb SINE Alu -17 295 1 871 142 0 22 chr11 121579243 121579377 -29204176 - AluJo SINE Alu -175 137 7 308 281 72 30 chr11 121579473 121579640 -29203913 + MER102a DNA MER1_type 127 300 -30 327 254 0 0 chr11 121579803 121579870 -29203683 - MER116 DNA Mariner -12 68 2 250 238 161 35 chr11 121579881 121580024 -29203529 + L2 LINE L2 3152 3312 -1 364 379 16 16 chr11 121581245 121581435 -29202118 + L2 LINE L2 2902 3091 -181 2121 244 124 25 chr11 121581446 121582556 -29200997 - L2 LINE L2 0 3313 2088 346 279 168 20 chr11 121582842 121583039 -29200514 - MIR SINE MIR -13 249 24 2070 102 56 0 chr11 121583080 121583364 -29200189 - AluSq SINE Alu -13 300 1 198 0 0 0 chr11 121583445 121583467 -29200086 + (A)n Simple_repeat Simple_repeat 1 22 0 2014 143 0 0 chr11 121583883 121584169 -29199384 + AluSx SINE Alu 1 286 -26 396 0 0 0 chr11 121584169 121584213 -29199340 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chr11 121584677 121584705 -29198848 + AT_rich Low_complexity Low_complexity 1 28 0 2140 83 0 14 chr11 121585084 121585362 -29198191 + AluY SINE Alu 3 276 -35 231 36 0 0 chr11 121585369 121585397 -29198156 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 1068 154 5 32 chr11 121585617 121585636 -29197917 + AluSg/x SINE Alu 118 136 -174 2246 93 0 10 chr11 121585636 121585947 -29197606 + AluY SINE Alu 1 308 -3 1068 154 5 32 chr11 121585947 121586115 -29197438 + AluSg/x SINE Alu 136 300 -10 1563 84 183 27 chr11 121586351 121586613 -29196940 + AluSp SINE Alu 1 303 0 29 28 0 0 chr11 121586773 121586809 -29196744 + AT_rich Low_complexity Low_complexity 1 36 0 4359 153 47 75 chr11 121587774 121588332 -29195221 + L1MB3 LINE L1 5101 5595 -588 2134 100 3 62 chr11 121588332 121588653 -29194900 + AluSp SINE Alu 1 302 -11 4359 153 47 75 chr11 121588653 121589226 -29194327 + L1MB3 LINE L1 5595 6182 -1 21 36 0 0 chr11 121590002 121590030 -29193523 + AT_rich Low_complexity Low_complexity 1 28 0 182 287 194 23 chr11 121590677 121590806 -29192747 + L3b LINE CR1 1166 1316 -267 23 54 0 0 chr11 121592946 121592983 -29190570 + AT_rich Low_complexity Low_complexity 1 37 0 299 64 0 21 chr11 121593122 121593131 -29190422 + (CA)n Simple_repeat Simple_repeat 1 54 0 299 64 0 21 chr11 121593131 121593178 -29190375 + (CA)n Simple_repeat Simple_repeat 1 46 0 183 80 0 0 chr11 121594168 121594193 -29189360 + (A)n Simple_repeat Simple_repeat 1 25 0 22 88 0 0 chr11 121594602 121594659 -29188894 + AT_rich Low_complexity Low_complexity 1 57 0 22 56 0 0 chr11 121594979 121595015 -29188538 + AT_rich Low_complexity Low_complexity 1 36 0 1966 136 21 0 chr11 121595183 121595482 -29188071 - AluSx SINE Alu 0 305 1 322 278 110 35 chr11 121596077 121596250 -29187303 + L1MC5 LINE L1 7009 7194 -767 475 302 31 31 chr11 121596311 121596569 -29186984 + L1MC4 LINE L1 7194 7451 -591 591 192 42 8 chr11 121596578 121596698 -29186855 - MER94 DNA DNA -2 132 9 361 302 129 17 chr11 121596725 121596957 -29186596 + L1MC5 LINE L1 7302 7559 -402 1485 187 53 7 chr11 121597638 121597921 -29185632 + AluJo SINE Alu 1 296 -16 244 227 86 159 chr11 121599128 121599194 -29184359 - MIR SINE MIR -65 197 128 2154 106 7 0 chr11 121599194 121599486 -29184067 - AluSx SINE Alu -18 294 1 244 227 86 159 chr11 121599486 121599582 -29183971 - MIR SINE MIR -134 128 47 212 134 12 98 chr11 121599663 121599745 -29183808 + (TTATA)n Simple_repeat Simple_repeat 2 76 0 935 85 85 0 chr11 121600356 121600485 -29183068 - FRAM SINE Alu -19 157 18 22 0 0 0 chr11 121600584 121600606 -29182947 + AT_rich Low_complexity Low_complexity 1 22 0 2255 116 0 3 chr11 121601208 121601518 -29182035 + AluSx SINE Alu 1 309 -3 684 144 0 45 chr11 121601576 121601708 -29181845 + FLAM_C SINE Alu 14 139 -4 607 141 0 23 chr11 121601708 121601836 -29181717 + L1MA4 LINE L1 4321 4445 -1701 1316 164 49 4 chr11 121601838 121602240 -29181313 + L1MA4 LINE L1 5068 5489 -746 286 89 0 22 chr11 121602240 121602285 -29181268 + Alu SINE Alu 1 44 -259 236 144 29 3 chr11 121602287 121602426 -29181127 + AluSg/x SINE Alu 124 307 -1 2478 136 73 85 chr11 121602431 121603028 -29180525 + L1MA4 LINE L1 5490 6129 -42 2695 10 0 7 chr11 121603028 121603328 -29180225 + AluY SINE Alu 1 298 -13 2294 92 0 7 chr11 121603338 121603642 -29179911 + AluSx SINE Alu 1 302 -10 26 0 0 0 chr11 121603697 121603723 -29179830 + AT_rich Low_complexity Low_complexity 1 26 0 2343 112 0 0 chr11 121603851 121604163 -29179390 - AluSx SINE Alu 0 312 1 2473 160 52 7 chr11 121604268 121604725 -29178828 + L1MB3 LINE L1 5653 6130 -53 1944 110 63 17 chr11 121604737 121605036 -29178517 + AluSq SINE Alu 1 313 0 914 234 0 50 chr11 121605387 121605588 -29177965 + MER58A DNA MER1_type 1 191 -33 1179 143 8 97 chr11 121605612 121605871 -29177682 + MER46A DNA MER2_type 1 236 0 1874 157 3 3 chr11 121606005 121606299 -29177254 + AluSx SINE Alu 3 296 -16 3409 184 68 24 chr11 121606307 121606721 -29176832 + L1MB8 LINE L1 5362 5757 -421 1702 111 0 8 chr11 121606721 121606956 -29176597 + AluSg/x SINE Alu 73 305 -5 3409 184 68 24 chr11 121606956 121607324 -29176229 + L1MB8 LINE L1 5757 6178 0 333 314 108 34 chr11 121607326 121607530 -29176023 + L1ME3A LINE L1 5938 6156 -14 1794 122 66 21 chr11 121607532 121607819 -29175734 - AluSx SINE Alu -12 300 1 812 199 17 34 chr11 121607835 121608011 -29175542 + AluJo SINE Alu 120 292 -20 195 299 11 35 chr11 121608056 121608143 -29175410 - MIR SINE MIR -112 150 66 453 301 68 46 chr11 121608174 121608393 -29175160 + L2 LINE L2 3061 3284 -29 257 88 0 0 chr11 121608523 121608557 -29174996 - AluJo SINE Alu -12 290 257 1106 209 10 10 chr11 121608557 121608763 -29174790 - AluJo SINE Alu -106 206 1 892 183 139 10 chr11 121608963 121609061 -29174492 + MER46A DNA MER2_type 2 86 -2645 1788 132 92 0 chr11 121609061 121609334 -29174219 + AluSx SINE Alu 1 298 -14 892 183 139 10 chr11 121609334 121609443 -29174110 + MER46A DNA MER2_type 86 236 0 229 239 0 30 chr11 121610327 121610394 -29173159 + T-rich Low_complexity Low_complexity 5 69 0 2058 132 29 9 chr11 121610460 121610808 -29172745 + L1PB2 LINE L1 5794 6148 -3 22 0 0 0 chr11 121611038 121611060 -29172493 + AT_rich Low_complexity Low_complexity 1 22 0 243 268 0 0 chr11 121611523 121611579 -29171974 + MER117 DNA MER1_type 94 149 -48 272 325 12 0 chr11 121611611 121611691 -29171862 - L2 LINE L2 -4 3268 3188 1272 192 73 28 chr11 121612175 121612462 -29171091 + AluJo SINE Alu 1 300 -12 620 197 0 95 chr11 121615353 121615500 -29168053 - FLAM_A SINE Alu 0 133 1 25 31 0 0 chr11 121616005 121616037 -29167516 + AT_rich Low_complexity Low_complexity 1 32 0 26 50 0 0 chr11 121616392 121616432 -29167121 + AT_rich Low_complexity Low_complexity 1 40 0 1915 152 7 3 chr11 121617050 121617346 -29166207 - AluSx SINE Alu -15 297 1 288 100 71 57 chr11 121618437 121618507 -29165046 + L1MB7 LINE L1 6094 6164 -20 195 250 0 0 chr11 121619036 121619076 -29164477 - MIR SINE MIR -65 197 158 745 167 0 8 chr11 121619163 121619295 -29164258 + FLAM_C SINE Alu 2 132 -1 230 116 23 0 chr11 121619709 121619752 -29163801 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 22 0 0 0 chr11 121620770 121620792 -29162761 + AT_rich Low_complexity Low_complexity 1 22 0 1349 205 29 4 chr11 121620836 121621109 -29162444 + L1MD2 LINE L1 6069 6348 -11 1745 90 19 182 chr11 121621439 121621807 -29161746 - AluYb8 SINE Alu 0 308 1 376 353 39 42 chr11 121622405 121622549 -29161004 + L2 LINE L2 1742 1885 -1429 2405 86 3 0 chr11 121622549 121622853 -29160700 - AluSp SINE Alu -8 305 1 376 353 39 42 chr11 121622853 121623014 -29160539 + L2 LINE L2 1885 2046 -1268 1126 120 0 0 chr11 121623015 121623173 -29160380 - AluSg/x SINE Alu -18 294 137 743 309 56 25 chr11 121623210 121623222 -29160331 + L2 LINE L2 2123 2133 -1181 1252 155 103 123 chr11 121623222 121623571 -29159982 + MER2 DNA MER2_type 1 342 -2 743 309 56 25 chr11 121623571 121623878 -29159675 + L2 LINE L2 2133 2452 -862 2337 100 0 16 chr11 121624870 121625180 -29158373 + AluSx SINE Alu 1 305 -7 375 307 9 9 chr11 121625311 121625425 -29158128 - MIR SINE MIR -109 153 40 2038 122 0 14 chr11 121625560 121625846 -29157707 + AluSx SINE Alu 1 282 -30 1941 138 3 26 chr11 121626146 121626451 -29157102 + AluJb SINE Alu 1 298 -14 1983 122 51 3 chr11 121627665 121627959 -29155594 - AluSx SINE Alu -4 308 1 22 0 0 0 chr11 121628064 121628086 -29155467 + AT_rich Low_complexity Low_complexity 1 22 0 2326 80 0 29 chr11 121628608 121628919 -29154634 + AluY SINE Alu 1 302 -9 1567 193 41 7 chr11 121629129 121629301 -29154252 - AluJb SINE Alu -7 305 117 246 32 0 0 chr11 121629301 121629332 -29154221 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1567 193 41 7 chr11 121629332 121629454 -29154099 - AluJb SINE Alu -195 117 1 1826 153 0 17 chr11 121629458 121629770 -29153783 - AluJb SINE Alu 0 307 1 2014 128 11 0 chr11 121629800 121630082 -29153471 + AluSx SINE Alu 1 285 -27 477 0 0 0 chr11 121630082 121630135 -29153418 + (CA)n Simple_repeat Simple_repeat 2 54 0 1588 191 36 7 chr11 121630250 121630553 -29153000 + AluJo SINE Alu 1 312 0 2142 134 0 7 chr11 121630595 121630902 -29152651 + AluSg1 SINE Alu 1 305 -4 25 0 0 0 chr11 121631338 121631363 -29152190 + AT_rich Low_complexity Low_complexity 1 25 0 201 196 20 0 chr11 121631496 121631547 -29152006 + (TA)n Simple_repeat Simple_repeat 2 53 0 27 0 0 0 chr11 121631547 121631574 -29151979 + AT_rich Low_complexity Low_complexity 1 27 0 1215 156 70 96 chr11 121631574 121631844 -29151709 - AluSx SINE Alu -49 263 1 1856 129 7 20 chr11 121632324 121632618 -29150935 + AluJb SINE Alu 1 290 -22 216 97 0 0 chr11 121632673 121632704 -29150849 + (TG)n Simple_repeat Simple_repeat 2 32 0 2454 131 9 3 chr11 121632704 121633047 -29150506 - MER7A DNA MER2_type -1 345 3 609 260 100 15 chr11 121633092 121633292 -29150261 - MIR SINE MIR -37 225 9 419 225 33 99 chr11 121634121 121634272 -29149281 + MER5B DNA MER1_type 32 172 -6 2272 120 65 6 chr11 121634400 121634741 -29148812 + MER46B DNA MER2_type 1 236 0 365 302 119 55 chr11 121635344 121635511 -29148042 - MIR SINE MIR -10 252 64 1527 189 55 7 chr11 121635511 121635802 -29147751 + AluJo SINE Alu 1 305 -7 365 302 119 55 chr11 121635802 121635869 -29147684 - MIR SINE MIR -198 64 3 885 222 0 17 chr11 121635969 121636145 -29147408 - FAM SINE Alu -2 173 1 22 0 0 0 chr11 121636154 121636176 -29147377 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 121636443 121636465 -29147088 + AT_rich Low_complexity Low_complexity 1 22 0 379 244 12 0 chr11 121637002 121637084 -29146469 + L1ME3A LINE L1 6035 6117 -53 707 165 0 0 chr11 121637090 121637199 -29146354 - AluJb SINE Alu -44 268 160 816 303 107 15 chr11 121637288 121637700 -29145853 - L1ME3A LINE L1 -295 5875 5426 495 198 112 0 chr11 121637780 121637896 -29145657 + MLT1E1 LTR MaLR 113 241 -413 855 194 13 7 chr11 121637924 121638079 -29145474 + MLT1E3 LTR MaLR 469 624 0 812 240 142 74 chr11 121638128 121638349 -29145204 - L1ME3A LINE L1 -819 5327 5122 2006 145 7 10 chr11 121638349 121638652 -29144901 - AluSx SINE Alu -10 302 1 812 240 142 74 chr11 121638652 121639239 -29144314 - L1ME3A LINE L1 -1024 5122 4464 832 238 86 56 chr11 121639336 121639639 -29143914 + MER46C DNA MER2_type 3 314 -24 341 296 0 9 chr11 121639763 121639871 -29143682 - L1ME LINE L1 -582 5584 5478 2214 121 3 13 chr11 121639871 121640186 -29143367 - AluSx SINE Alu 0 312 1 2305 246 132 25 chr11 121640199 121641294 -29142259 - L1ME LINE L1 -782 5364 4152 405 337 49 16 chr11 121641689 121641873 -29141680 - MIR SINE MIR -48 214 25 1343 133 5 0 chr11 121641897 121642092 -29141461 + AluSq SINE Alu 88 283 -30 1624 192 7 19 chr11 121642808 121643115 -29140438 - AluJb SINE Alu -9 303 1 253 184 0 0 chr11 121643230 121643268 -29140285 + Alu SINE Alu 7 44 -258 911 170 0 0 chr11 121643268 121643415 -29140138 + AluJb SINE Alu 157 303 -9 2151 126 3 0 chr11 121643449 121643751 -29139802 + AluSq SINE Alu 1 303 -10 2112 99 10 31 chr11 121643889 121644181 -29139372 - AluSx SINE Alu -14 298 13 192 333 53 0 chr11 121644315 121644390 -29139163 + L2 LINE L2 2550 2628 -686 1167 218 74 11 chr11 121644391 121644675 -29138878 + AluJb SINE Alu 1 302 0 314 309 122 20 chr11 121645006 121645252 -29138301 + L1ME4a LINE L1 5628 5898 -223 1775 171 7 16 chr11 121645263 121645573 -29137980 + AluJo SINE Alu 1 307 -5 2194 98 17 14 chr11 121645724 121646019 -29137534 - AluSx SINE Alu -16 296 1 718 182 0 0 chr11 121646152 121646262 -29137291 + FLAM_C SINE Alu 9 118 -25 23 54 0 0 chr11 121646365 121646402 -29137151 + AT_rich Low_complexity Low_complexity 1 37 0 2471 44 7 10 chr11 121647091 121647386 -29136167 - AluY SINE Alu -17 294 1 2037 128 10 3 chr11 121647671 121647967 -29135586 + AluSg SINE Alu 2 299 -11 2153 135 3 0 chr11 121647995 121648298 -29135255 + AluSx SINE Alu 1 304 -8 32 26 0 0 chr11 121648477 121648516 -29135037 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr11 121649189 121649215 -29134338 + AT_rich Low_complexity Low_complexity 1 26 0 890 183 208 59 chr11 121649392 121649673 -29133880 - Charlie4a DNA MER1_type -1454 507 145 1232 174 202 0 chr11 121649673 121649920 -29133633 + AluJo SINE Alu 1 297 -15 890 183 208 59 chr11 121649920 121650047 -29133506 - Charlie4a DNA MER1_type -1816 145 38 185 261 43 0 chr11 121651303 121651349 -29132204 + L2 LINE L2 3215 3262 -10 2388 85 3 3 chr11 121651519 121651825 -29131728 + AluSp SINE Alu 1 306 -7 1871 123 6 123 chr11 121652198 121652540 -29131013 + AluSx SINE Alu 1 302 0 1759 139 68 0 chr11 121652806 121653087 -29130466 + AluJb SINE Alu 1 300 -12 1120 205 43 5 chr11 121653237 121653447 -29130106 - MER58A DNA MER1_type 0 224 7 1224 174 8 51 chr11 121653638 121653873 -29129680 + AluJo SINE Alu 31 255 -57 219 188 0 0 chr11 121653894 121653942 -29129611 + GA-rich Low_complexity Low_complexity 3 50 0 438 209 70 9 chr11 121653987 121654102 -29129451 + MLT1L LTR MaLR 163 284 -331 561 198 0 0 chr11 121654155 121654251 -29129302 - AluJb SINE Alu -81 231 136 312 228 169 92 chr11 121654297 121654410 -29129143 + MLT1L LTR MaLR 410 544 -71 1366 144 3 127 chr11 121654410 121654574 -29128979 + AluJo SINE Alu 1 101 -211 2219 120 0 0 chr11 121654574 121654874 -29128679 + AluSx SINE Alu 1 300 -12 1366 144 3 127 chr11 121654874 121655055 -29128498 + AluJo SINE Alu 101 303 -9 312 228 169 92 chr11 121655055 121655125 -29128428 + MLT1L LTR MaLR 544 607 -8 21 0 0 0 chr11 121655206 121655227 -29128326 + AT_rich Low_complexity Low_complexity 1 21 0 234 178 22 0 chr11 121655399 121655444 -29128109 - MER58 DNA MER1_type -1 2419 2374 1940 103 4 4 chr11 121656675 121656948 -29126605 + AluSx SINE Alu 1 273 -39 222 253 120 0 chr11 121657340 121657415 -29126138 - L2 LINE L2 -3 3310 3227 21 0 0 0 chr11 121658057 121658078 -29125475 + AT_rich Low_complexity Low_complexity 1 21 0 349 274 178 79 chr11 121658619 121659215 -29124338 - L1M2 LINE L1 -5443 1406 752 21 57 0 0 chr11 121659215 121659250 -29124303 + GC_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr11 121659276 121659309 -29124244 + GC_rich Low_complexity Low_complexity 1 33 0 600 232 36 64 chr11 121660775 121660995 -29122558 - MIR SINE MIR -33 229 16 370 297 55 21 chr11 121661050 121661195 -29122358 + L1ME LINE L1 5463 5612 -509 2203 113 0 7 chr11 121661195 121661504 -29122049 + AluSc SINE Alu 1 307 -2 1385 141 9 31 chr11 121661531 121661758 -29121795 + AluJo SINE Alu 15 236 -76 4425 108 20 31 chr11 121661758 121662280 -29121273 + MER41B LTR ERV1 1 516 -119 1789 157 7 13 chr11 121662280 121662586 -29120967 - AluSx SINE Alu -8 304 1 4425 108 20 31 chr11 121662586 121662705 -29120848 + MER41B LTR ERV1 516 635 0 2393 98 3 3 chr11 121662706 121663033 -29120520 - pTR5 LTR ERV1 -2046 392 66 287 276 10 0 chr11 121663033 121663131 -29120422 - LTR30 LTR ERV1 -80 642 544 2976 148 134 43 chr11 121663131 121664034 -29119519 - pTR5 LTR ERV1 -413 2025 742 473 97 0 0 chr11 121664035 121664097 -29119456 + AluJo SINE Alu 232 293 -19 399 221 63 16 chr11 121664097 121664224 -29119329 + L1ME LINE L1 5606 5738 -383 1672 170 33 7 chr11 121664236 121664536 -29119017 + AluJo SINE Alu 5 312 0 2271 81 7 10 chr11 121664538 121664835 -29118718 - AluSg SINE Alu -14 296 1 1673 170 7 26 chr11 121665212 121665518 -29118035 + AluJb SINE Alu 1 300 -12 2198 108 3 0 chr11 121665518 121665813 -29117740 + AluSq SINE Alu 1 296 -17 181 353 77 39 chr11 121666077 121666233 -29117320 - L2 LINE L2 -86 3186 3025 3344 112 39 52 chr11 121666250 121666784 -29116769 + MER1A DNA MER1_type 1 527 0 361 312 162 66 chr11 121666876 121667389 -29116164 - L2 LINE L2 -474 2840 2279 942 174 6 12 chr11 121667599 121667771 -29115782 - FRAM SINE Alu -5 171 1 786 213 60 13 chr11 121667834 121667984 -29115569 + FRAM SINE Alu 1 157 -19 2370 99 0 6 chr11 121668803 121669117 -29114436 - AluSq SINE Alu -1 312 1 302 257 0 0 chr11 121669117 121669187 -29114366 + MIR3 SINE MIR 124 193 -15 2313 114 0 0 chr11 121669349 121669648 -29113905 + AluSx SINE Alu 1 299 -13 2326 100 0 3 chr11 121669888 121670187 -29113366 - AluSq SINE Alu -15 298 1 860 183 7 0 chr11 121670189 121670329 -29113224 + MLT1F1 LTR MaLR 1 141 -426 1452 182 54 57 chr11 121670329 121670664 -29112889 + MLT1A1 LTR MaLR 1 334 -31 1923 191 77 15 chr11 121670670 121671073 -29112480 + MLT1F1 LTR MaLR 140 567 0 302 338 63 33 chr11 121671271 121671570 -29111983 + L2 LINE L2 2437 2744 -570 387 349 130 44 chr11 121671619 121672003 -29111550 + L2 LINE L2 2856 3272 0 211 304 125 0 chr11 121672014 121672070 -29111483 - MIR SINE MIR -110 98 36 663 200 30 44 chr11 121672393 121672554 -29110999 + FLAM_A SINE Alu 1 133 0 21 36 0 0 chr11 121672584 121672612 -29110941 + AT_rich Low_complexity Low_complexity 1 28 0 2173 115 10 0 chr11 121673049 121673354 -29110199 + AluSq SINE Alu 1 308 -5 2017 179 118 5 chr11 121673475 121673865 -29109688 - MER39 LTR ERV1 -273 434 1 2418 118 6 11 chr11 121674783 121675132 -29108421 - THE1C LTR MaLR 0 375 29 534 219 65 126 chr11 121675614 121676003 -29107550 + L1ME4a LINE L1 5521 5883 -238 2000 127 3 58 chr11 121676003 121676191 -29107362 + AluSx SINE Alu 1 165 -147 2038 104 21 17 chr11 121676191 121676480 -29107073 + AluSp SINE Alu 1 290 -23 2000 127 3 58 chr11 121676480 121676621 -29106932 + AluSx SINE Alu 165 312 0 534 219 65 126 chr11 121676621 121676660 -29106893 + L1ME4a LINE L1 5883 5923 -198 3826 235 72 41 chr11 121676699 121676930 -29106623 - L1M4 LINE L1 -848 5298 5076 1730 191 0 3 chr11 121676930 121677229 -29106324 + AluJb SINE Alu 1 298 -14 3826 235 72 41 chr11 121677229 121677297 -29106256 - L1M4 LINE L1 -1070 5076 5012 2178 116 10 0 chr11 121677297 121677599 -29105954 - AluSg SINE Alu -5 305 1 3826 235 72 41 chr11 121677599 121678550 -29105003 - L1M4 LINE L1 -1134 5012 4001 1182 178 50 135 chr11 121678550 121678621 -29104932 - MLT1A1 LTR MaLR 0 365 290 2121 134 3 0 chr11 121678621 121678919 -29104634 - AluSx SINE Alu -13 299 1 1182 178 50 135 chr11 121678919 121679246 -29104307 - MLT1A1 LTR MaLR -75 290 1 3826 235 72 41 chr11 121679246 121679323 -29104230 - L1M4 LINE L1 -2145 4001 3928 21 0 0 0 chr11 121679361 121679382 -29104171 + AT_rich Low_complexity Low_complexity 1 21 0 2202 135 3 0 chr11 121680739 121681050 -29102503 - AluSx SINE Alu 0 312 1 1666 167 16 50 chr11 121683106 121683293 -29100260 - AluJo SINE Alu 0 312 139 2261 76 0 64 chr11 121683293 121683622 -29099931 - AluSx SINE Alu -4 308 1 1666 167 16 50 chr11 121683622 121683757 -29099796 - AluJo SINE Alu -173 139 1 879 294 24 4 chr11 121684055 121684303 -29099250 + MIR SINE MIR 2 254 -8 690 224 55 11 chr11 121684689 121684872 -29098681 - L1M4 LINE L1 -2073 4073 3883 844 153 0 0 chr11 121684881 121685005 -29098548 - FLAM_C SINE Alu -19 124 1 2400 210 56 5 chr11 121685009 121685619 -29097934 - L1M4 LINE L1 -2812 3334 2694 738 294 114 59 chr11 121685865 121686139 -29097414 + HAL1 LINE L1 263 520 -1987 2280 104 0 3 chr11 121686139 121686436 -29097117 - AluSp SINE Alu -17 296 1 738 294 114 59 chr11 121686436 121686688 -29096865 + HAL1 LINE L1 520 818 -1689 4265 150 47 30 chr11 121687408 121688180 -29095373 - LTR1 LTR ERV1 0 785 1 2262 104 0 28 chr11 121689064 121689382 -29094171 + AluSx SINE Alu 1 309 -3 4030 153 30 37 chr11 121689421 121689499 -29094054 + L1MB2 LINE L1 5441 5518 -673 1906 117 78 4 chr11 121689499 121689780 -29093773 - AluSg SINE Alu -8 302 1 4030 153 30 37 chr11 121689780 121690457 -29093096 + L1MB2 LINE L1 5518 6191 0 2542 59 0 0 chr11 121690464 121690770 -29092783 + AluY SINE Alu 1 306 -5 2271 125 3 0 chr11 121691001 121691312 -29092241 - AluSx SINE Alu 0 312 1 1666 167 16 50 chr11 121693368 121693555 -29089998 - AluJo SINE Alu 0 312 139 2244 77 0 64 chr11 121693555 121693882 -29089671 - AluSx SINE Alu -6 306 1 1666 167 16 50 chr11 121693882 121694017 -29089536 - AluJo SINE Alu -173 139 1 890 290 24 4 chr11 121694315 121694563 -29088990 + MIR SINE MIR 2 254 -8 690 224 55 11 chr11 121694949 121695132 -29088421 - L1M4 LINE L1 -2073 4073 3883 844 153 0 0 chr11 121695141 121695265 -29088288 - FLAM_C SINE Alu -19 124 1 2398 210 56 5 chr11 121695269 121695879 -29087674 - L1M4 LINE L1 -2812 3334 2694 738 294 114 59 chr11 121696125 121696399 -29087154 + HAL1 LINE L1 263 520 -1987 2242 111 0 3 chr11 121696399 121696696 -29086857 - AluSp SINE Alu -17 296 1 738 294 114 59 chr11 121696696 121696948 -29086605 + HAL1 LINE L1 520 818 -1689 4214 150 48 31 chr11 121697670 121698442 -29085111 - LTR1 LTR ERV1 0 785 1 2262 104 0 28 chr11 121699326 121699644 -29083909 + AluSx SINE Alu 1 309 -3 4015 158 34 34 chr11 121699670 121699760 -29083793 + L1MB2 LINE L1 5424 5513 -678 1933 114 78 4 chr11 121699760 121700041 -29083512 - AluSg SINE Alu -8 302 1 4015 158 34 34 chr11 121700041 121700718 -29082835 + L1MB2 LINE L1 5512 6191 0 2521 57 0 0 chr11 121700725 121701026 -29082527 + AluY SINE Alu 1 301 -10 249 139 0 0 chr11 121701161 121701204 -29082349 + (TCCCC)n Simple_repeat Simple_repeat 2 44 0 4997 119 62 9 chr11 121701207 121701946 -29081607 - LTR17 LTR ERV1 0 780 3 225 0 0 0 chr11 121701948 121701973 -29081580 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 1711 176 24 7 chr11 121701974 121702269 -29081284 - AluJb SINE Alu -12 300 1 5777 171 8 16 chr11 121702269 121702879 -29080674 - MSTA-int LTR MaLR -681 970 370 2153 135 0 0 chr11 121702879 121703176 -29080377 + AluSp SINE Alu 1 297 -16 5777 171 8 16 chr11 121703176 121703543 -29080010 - MSTA-int LTR MaLR -1281 370 1 2118 154 78 34 chr11 121703543 121703953 -29079600 - MSTA LTR MaLR 0 428 1 393 194 31 41 chr11 121703962 121704060 -29079493 + LTR50 LTR ERVL 699 795 0 433 314 71 21 chr11 121704391 121704630 -29078923 + HERVL LTR ERVL 397 689 -4838 387 323 24 56 chr11 121704799 121704895 -29078658 + HERVL LTR ERVL 956 1054 -4600 2405 132 0 34 chr11 121704895 121705244 -29078309 - MER1B DNA MER1_type 0 337 1 387 323 24 56 chr11 121705244 121705513 -29078040 + HERVL LTR ERVL 1054 1257 -4397 27 0 0 0 chr11 121705513 121705540 -29078013 + AT_rich Low_complexity Low_complexity 1 27 0 2073 130 0 10 chr11 121705540 121705833 -29077720 - AluSq SINE Alu -22 291 2 280 216 0 0 chr11 121705888 121705939 -29077614 - Charlie2 DNA MER1_type -2731 51 1 339 25 0 0 chr11 121706106 121706146 -29077407 + (CA)n Simple_repeat Simple_repeat 2 41 0 2191 117 0 3 chr11 121706764 121707071 -29076482 - AluSg SINE Alu -4 306 1 2234 64 11 11 chr11 121707134 121707417 -29076136 - L1PA7 LINE L1 0 6154 5872 24 0 0 0 chr11 121707635 121707659 -29075894 + AT_rich Low_complexity Low_complexity 1 24 0 1658 167 10 43 chr11 121707967 121708272 -29075281 + AluJb SINE Alu 1 295 -17 1615 186 36 16 chr11 121708273 121708579 -29074974 + AluJb SINE Alu 1 312 0 249 204 182 23 chr11 121709160 121709248 -29074305 + L1MCa LINE L1 1866 1967 -4459 2004 114 0 29 chr11 121709251 121709417 -29074136 - AluSg SINE Alu -11 299 145 2154 100 14 3 chr11 121709417 121709706 -29073847 - AluSp SINE Alu -21 292 1 2004 114 0 29 chr11 121709706 121709846 -29073707 - AluSg SINE Alu -165 145 2 292 63 127 127 chr11 121709927 121709990 -29073563 - MER41A LTR ERV1 -8 546 484 2516 58 0 3 chr11 121709990 121710302 -29073251 + AluY SINE Alu 1 311 0 3855 126 17 51 chr11 121710503 121710567 -29072986 - MER41B LTR ERV1 -8 627 562 2397 64 0 10 chr11 121710567 121710880 -29072673 + AluY SINE Alu 1 310 -1 3855 126 17 51 chr11 121710880 121711464 -29072089 - MER41B LTR ERV1 -73 562 1 860 231 82 21 chr11 121711465 121711746 -29071807 + L1MCa LINE L1 2125 2422 -4185 773 172 31 0 chr11 121711764 121711892 -29071661 + AluJb SINE Alu 2 133 -179 724 165 69 83 chr11 121711897 121712115 -29071438 + L1MCa LINE L1 2380 2594 -4013 2389 79 3 3 chr11 121712363 121712666 -29070887 - AluSp SINE Alu -10 303 1 310 263 103 93 chr11 121713005 121713325 -29070228 - MLT1J LTR MaLR 0 511 185 2552 181 12 2 chr11 121713325 121713755 -29069798 - MER57B LTR ERV1 0 434 1 310 263 103 93 chr11 121713755 121713822 -29069731 - MLT1J LTR MaLR -326 185 120 2324 99 3 10 chr11 121714652 121714964 -29068589 - AluSx SINE Alu -2 310 1 204 167 0 0 chr11 121715115 121715151 -29068402 - L2 LINE L2 0 3313 3278 2414 76 23 0 chr11 121715462 121715763 -29067790 - AluY SINE Alu -3 308 1 787 168 50 0 chr11 121715934 121716053 -29067500 + FLAM_C SINE Alu 3 127 -16 25 31 0 0 chr11 121716053 121716085 -29067468 + AT_rich Low_complexity Low_complexity 1 32 0 784 139 74 0 chr11 121716085 121716207 -29067346 - FLAM_C SINE Alu -11 132 2 1658 302 98 31 chr11 121716435 121717273 -29066280 - L2 LINE L2 0 3313 2402 2478 104 51 23 chr11 121717273 121717627 -29065926 + THE1B LTR MaLR 1 364 0 1658 302 98 31 chr11 121717627 121717828 -29065725 - L2 LINE L2 -911 2402 2216 476 287 6 44 chr11 121717838 121717897 -29065656 - L2 LINE L2 -1291 2023 1963 2529 63 0 0 chr11 121717897 121718198 -29065355 - AluY SINE Alu -10 301 1 476 287 6 44 chr11 121718198 121718319 -29065234 - L2 LINE L2 -1351 1963 1850 355 336 36 15 chr11 121718352 121718489 -29065064 + L2 LINE L2 3125 3264 -8 2120 114 10 0 chr11 121718724 121719023 -29064530 + AluSx SINE Alu 3 304 -8 252 302 115 21 chr11 121719034 121719130 -29064423 - HAL1 LINE L1 -2103 404 300 927 108 13 6 chr11 121719897 121720054 -29063499 + (TTC)n Simple_repeat Simple_repeat 2 159 0 1858 123 22 0 chr11 121720059 121720328 -29063225 - AluSx SINE Alu -37 275 1 515 101 124 11 chr11 121720330 121720419 -29063134 - MER41B LTR ERV1 -446 189 91 1532 193 0 34 chr11 121721034 121721205 -29062348 + AluJo SINE Alu 1 159 -153 4310 97 0 23 chr11 121721205 121721578 -29061975 - MER41A LTR ERV1 0 554 197 2108 133 7 0 chr11 121721578 121721880 -29061673 - AluSx SINE Alu -8 304 1 4310 97 0 23 chr11 121721880 121722073 -29061480 - MER41A LTR ERV1 -357 197 1 1532 193 0 34 chr11 121722073 121722197 -29061356 + AluJo SINE Alu 159 286 -26 372 256 13 0 chr11 121722750 121722828 -29060725 - ERVL LTR ERVL -488 5276 5198 649 320 24 12 chr11 121723080 121723330 -29060223 - ERVL LTR ERVL -1907 3857 3605 22 0 0 0 chr11 121723463 121723485 -29060068 + AT_rich Low_complexity Low_complexity 1 22 0 2055 133 3 3 chr11 121723505 121723806 -29059747 - AluSx SINE Alu -11 301 1 597 248 118 48 chr11 121723814 121724303 -29059250 - L1 LINE L1 -1109 5037 4487 235 295 90 0 chr11 121724812 121724890 -29058663 + L2 LINE L2 3229 3313 0 972 116 0 8 chr11 121724920 121725049 -29058504 - FLAM_A SINE Alu -5 128 1 1352 186 34 71 chr11 121725888 121726018 -29057535 + AluJo SINE Alu 1 134 -178 1795 150 10 10 chr11 121726018 121726330 -29057223 + AluSx SINE Alu 1 312 0 1352 186 34 71 chr11 121726330 121726522 -29057031 + AluJo SINE Alu 134 311 -1 1715 173 3 29 chr11 121726825 121727137 -29056416 + AluJo SINE Alu 3 306 -6 197 256 0 0 chr11 121727162 121727205 -29056348 - MIR SINE MIR -103 105 63 1949 159 96 0 chr11 121727233 121727271 -29056282 - MLT2B2 LTR ERVL 0 515 482 447 53 40 0 chr11 121727271 121727346 -29056207 + (TAGA)n Simple_repeat Simple_repeat 2 79 0 1949 159 96 0 chr11 121727346 121727730 -29055823 - MLT2B2 LTR ERVL -33 482 2 1799 164 0 0 chr11 121727731 121728005 -29055548 + AluJb SINE Alu 1 274 -38 183 162 0 0 chr11 121728047 121728084 -29055469 + CT-rich Low_complexity Low_complexity 2 38 0 561 88 0 0 chr11 121728290 121728370 -29055183 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 233 279 106 87 chr11 121728958 121729062 -29054491 + MIR SINE MIR 14 119 -89 530 279 15 55 chr11 121729106 121729168 -29054385 - MIR SINE MIR -57 205 142 1552 139 43 56 chr11 121729168 121729470 -29054083 - AluJb SINE Alu -14 298 1 530 279 15 55 chr11 121729470 121729608 -29053945 - MIR SINE MIR -120 142 13 2387 83 0 3 chr11 121729733 121730034 -29053519 + AluSx SINE Alu 1 300 -12 510 300 41 24 chr11 121730302 121730472 -29053081 + MIR3 SINE MIR 33 205 -3 222 264 69 0 chr11 121730574 121730646 -29052907 + L3 LINE CR1 1495 1571 -6 321 271 147 41 chr11 121730713 121730883 -29052670 - MIR SINE MIR -62 146 5 201 175 0 0 chr11 121731108 121731148 -29052405 + T-rich Low_complexity Low_complexity 1 40 0 2070 106 7 3 chr11 121731338 121731640 -29051913 + AluSq SINE Alu 1 303 0 248 208 14 14 chr11 121731692 121731764 -29051789 + (TA)n Simple_repeat Simple_repeat 2 73 0 292 281 83 61 chr11 121731775 121732101 -29051452 - HAL1b LINE L1 0 2507 798 2403 82 0 25 chr11 121732103 121732420 -29051133 - AluSg SINE Alu -1 309 1 37 39 0 0 chr11 121732421 121732472 -29051081 + AT_rich Low_complexity Low_complexity 1 51 0 189 0 0 0 chr11 121732555 121732576 -29050977 + (TG)n Simple_repeat Simple_repeat 2 22 0 2352 81 0 7 chr11 121732749 121733047 -29050506 - AluY SINE Alu -15 296 1 521 196 12 30 chr11 121733163 121733331 -29050222 + CT-rich Low_complexity Low_complexity 3 167 0 513 151 118 11 chr11 121733416 121733509 -29050044 - AluJo SINE Alu -88 224 122 382 282 30 23 chr11 121733539 121733670 -29049883 - HAL1 LINE L1 -829 1678 1547 415 259 15 52 chr11 121733672 121733807 -29049746 + L2 LINE L2 3184 3313 0 468 306 106 66 chr11 121734663 121734765 -29048788 - HAL1 LINE L1 -999 1508 1412 2359 97 0 0 chr11 121734765 121735064 -29048489 - AluSg SINE Alu -11 299 1 1760 154 10 52 chr11 121735065 121735371 -29048182 - AluSx SINE Alu -19 293 1 468 306 106 66 chr11 121735371 121735392 -29048161 - HAL1 LINE L1 -1095 1412 1393 386 38 0 19 chr11 121735392 121735445 -29048108 + (TG)n Simple_repeat Simple_repeat 1 52 0 468 306 106 66 chr11 121735445 121735496 -29048057 - HAL1 LINE L1 -1114 1393 1346 2099 143 0 0 chr11 121735496 121735797 -29047756 - AluSx SINE Alu -11 301 1 468 306 106 66 chr11 121735797 121736088 -29047465 - HAL1 LINE L1 -1161 1346 1020 23 0 0 0 chr11 121736226 121736249 -29047304 + AT_rich Low_complexity Low_complexity 1 23 0 274 281 36 82 chr11 121736940 121737136 -29046417 - HAL1 LINE L1 -2308 199 13 238 164 16 16 chr11 121737147 121737208 -29046345 + (CA)n Simple_repeat Simple_repeat 1 61 0 1818 151 3 40 chr11 121737708 121738032 -29045521 + AluJo SINE Alu 1 312 0 714 301 25 17 chr11 121738095 121738334 -29045219 + MIR SINE MIR 22 262 0 2288 73 3 3 chr11 121738471 121738760 -29044793 - AluY SINE Alu -4 307 19 475 127 25 0 chr11 121738786 121738865 -29044688 - L1MB3 LINE L1 0 6183 6103 1681 158 31 0 chr11 121738884 121739138 -29044415 - AluJb SINE Alu -33 279 18 1070 198 9 23 chr11 121739138 121739297 -29044256 - L1MB3 LINE L1 -358 5825 5668 2360 86 0 3 chr11 121739297 121739600 -29043953 - AluY SINE Alu -9 302 1 1070 198 9 23 chr11 121739600 121739657 -29043896 - L1MB3 LINE L1 -515 5668 5612 256 283 75 25 chr11 121740073 121740193 -29043360 - L2 LINE L2 -13 3259 3134 987 102 0 0 chr11 121740678 121740841 -29042712 + AluSg/x SINE Alu 156 318 0 469 176 104 32 chr11 121740843 121740968 -29042585 - L1ME4a LINE L1 -26 6095 5962 2097 123 42 142 chr11 121741456 121741873 -29041680 - MSTB LTR MaLR 0 426 60 2061 115 10 0 chr11 121741873 121742161 -29041392 - AluSg SINE Alu -19 291 1 2097 123 42 142 chr11 121742161 121742216 -29041337 - MSTB LTR MaLR -366 60 1 2294 113 0 0 chr11 121742499 121742799 -29040754 + AluSx SINE Alu 1 300 -12 2063 114 25 0 chr11 121742807 121743087 -29040466 + AluSx SINE Alu 1 287 -25 231 305 57 0 chr11 121743116 121743221 -29040332 - L1ME4a LINE L1 -341 5780 5670 560 219 16 107 chr11 121743330 121743380 -29040173 - HAL1 LINE L1 -294 2213 2160 2367 88 0 3 chr11 121743380 121743675 -29039878 + AluSc SINE Alu 3 296 -13 560 219 16 107 chr11 121743675 121743866 -29039687 - HAL1 LINE L1 -347 2160 1994 33 0 0 23 chr11 121743936 121743953 -29039600 + AT_rich Low_complexity Low_complexity 1 17 -26 1497 173 24 28 chr11 121743953 121744242 -29039311 + AluJo SINE Alu 1 288 -24 33 0 0 23 chr11 121744242 121744268 -29039285 + AT_rich Low_complexity Low_complexity 17 43 0 903 212 10 35 chr11 121744313 121744559 -29038994 - HAL1b LINE L1 -801 1570 343 311 209 23 47 chr11 121744655 121744741 -29038812 + MLT1J1 LTR MaLR 69 152 -294 231 318 94 6 chr11 121744983 121745153 -29038400 - HAL1 LINE L1 -2272 235 51 1188 205 117 34 chr11 121745153 121745589 -29037964 - MLT1D LTR MaLR 0 467 1 1955 124 19 56 chr11 121745747 121746069 -29037484 - AluSx SINE Alu 0 312 3 22 70 0 0 chr11 121746181 121746224 -29037329 + AT_rich Low_complexity Low_complexity 1 43 0 2163 108 3 0 chr11 121747364 121747652 -29035901 - AluSx SINE Alu 0 312 24 746 97 0 0 chr11 121747656 121747769 -29035784 + AluSg/x SINE Alu 192 304 0 313 293 230 18 chr11 121747978 121748163 -29035390 + MIR SINE MIR 6 228 -34 576 285 158 40 chr11 121748189 121748512 -29035041 - L2 LINE L2 -4 3309 2949 788 252 95 56 chr11 121748650 121748862 -29034691 + L2 LINE L2 989 1218 -2096 1797 190 55 11 chr11 121748862 121749209 -29034344 + MLT1A1 LTR MaLR 3 364 -1 788 252 95 56 chr11 121749209 121749302 -29034251 + L2 LINE L2 1218 1306 -2008 2384 113 49 64 chr11 121750397 121750806 -29032747 - MER57A LTR ERV1 0 403 1 1821 172 63 14 chr11 121750836 121751184 -29032369 - MLT1A1 LTR MaLR 0 365 1 1478 193 41 10 chr11 121751273 121751563 -29031990 - AluJb SINE Alu -13 299 1 1806 90 14 66 chr11 121751774 121752063 -29031490 - AluSc SINE Alu -6 303 30 1080 212 23 39 chr11 121752158 121752464 -29031089 - AluSx SINE Alu -1 301 1 799 205 66 24 chr11 121752583 121752749 -29030804 - AluJo SINE Alu -138 174 2 1447 134 17 72 chr11 121752962 121753252 -29030301 - AluSc SINE Alu -6 303 30 2280 122 0 0 chr11 121753344 121753648 -29029905 - AluSx SINE Alu -8 304 1 3206 264 109 42 chr11 121754326 121755773 -29027780 - L2 LINE L2 -9 3304 1794 327 145 29 14 chr11 121755790 121755859 -29027694 + L1ME LINE L1 5713 5782 -384 1371 156 74 4 chr11 121755918 121756161 -29027392 - AluJb SINE Alu -14 298 39 363 275 22 11 chr11 121756163 121756254 -29027299 - L2 LINE L2 -1510 1804 1713 754 169 169 35 chr11 121756263 121756494 -29027059 - L1ME2 LINE L1 -9 6155 5894 790 209 8 0 chr11 121756509 121756643 -29026910 - AluJo SINE Alu -176 136 2 2038 219 65 23 chr11 121756646 121757411 -29026142 - L1ME2 LINE L1 -263 5903 5103 43229 54 9 1 chr11 121757411 121763513 -29020040 - L1PA5 LINE L1 0 6154 2 2199 125 0 13 chr11 121763528 121763839 -29019714 - AluSx SINE Alu -5 307 1 1934 128 10 21 chr11 121763841 121764131 -29019422 - AluSq SINE Alu -15 298 12 780 288 23 24 chr11 121764176 121764528 -29019025 - L1 LINE L1 -984 5162 4804 4676 148 49 20 chr11 121764570 121765449 -29018104 - L1MC3 LINE L1 -164 7621 6718 775 284 42 18 chr11 121765589 121765874 -29017679 + L1M4 LINE L1 3481 3772 -2374 354 140 16 2 chr11 121765874 121766124 -29017429 + AluSx SINE Alu 1 302 0 34 24 0 0 chr11 121766130 121766171 -29017382 + AT_rich Low_complexity Low_complexity 1 41 0 348 286 43 57 chr11 121766540 121766680 -29016873 + MIR SINE MIR 20 157 -105 779 248 43 33 chr11 121766715 121766925 -29016628 - MIR SINE MIR -48 214 3 505 193 66 141 chr11 121766927 121767009 -29016544 + MSTB2 LTR MaLR 1 88 -369 2053 143 7 0 chr11 121767009 121767310 -29016243 - AluSx SINE Alu -9 303 1 505 193 66 141 chr11 121767310 121767440 -29016113 + MSTB2 LTR MaLR 88 197 -260 8873 129 12 18 chr11 121767458 121768031 -29015522 - L1MA2 LINE L1 0 6304 5729 2219 126 3 0 chr11 121768031 121768341 -29015212 + AluSx SINE Alu 1 311 -1 8873 129 12 18 chr11 121768341 121769093 -29014460 - L1MA2 LINE L1 -575 5729 4974 2041 100 76 14 chr11 121769093 121769383 -29014170 - AluSx SINE Alu -4 308 1 8873 129 12 18 chr11 121769383 121770433 -29013120 - L1MA2 LINE L1 -1330 4974 3940 2286 109 0 0 chr11 121770433 121770727 -29012826 - AluSg SINE Alu -16 294 1 8873 129 12 18 chr11 121770727 121770816 -29012737 - L1MA2 LINE L1 -2364 3940 3852 4008 101 0 4 chr11 121770818 121771331 -29012222 + MER9 LTR ERVK 1 511 0 19606 65 2 0 chr11 121771331 121774110 -29009443 + HERVK9 LTR ERVK 1 2786 -3130 2295 61 0 0 chr11 121774110 121774388 -29009165 + HERVK9 LTR ERVK 3711 3988 -1928 30393 86 16 12 chr11 121774418 121779447 -29004106 + HERV9 LTR ERV1 1 5010 -2001 12116 86 6 9 chr11 121779439 121781080 -29002473 + HERV9 LTR ERV1 6765 8399 0 * 5591 74 36 0 chr11 121781080 121781744 -29001809 + LTR12 LTR ERV1 1 688 0 1610 121 4 4 chr11 121781744 121781975 -29001578 - AluSx SINE Alu -81 231 1 1359 185 21 50 chr11 121781979 121782260 -29001293 + MSTB2 LTR MaLR 185 457 0 289 279 117 19 chr11 121782420 121782574 -29000979 + MIR3 SINE MIR 38 206 -2 1752 160 10 17 chr11 121782612 121782900 -29000653 - AluJo SINE Alu -24 288 3 1620 242 93 27 chr11 121783180 121783741 -28999812 - L1MC4a LINE L1 -1795 6013 5416 267 133 0 0 chr11 121784232 121784277 -28999276 + (TC)n Simple_repeat Simple_repeat 1 45 0 585 221 0 86 chr11 121784515 121784603 -28998950 + MIR SINE MIR 113 182 -80 2424 89 3 0 chr11 121784603 121784907 -28998646 + AluSp SINE Alu 1 305 -8 585 221 0 86 chr11 121784907 121784981 -28998572 + MIR SINE MIR 182 261 -1 361 280 42 8 chr11 121784981 121785099 -28998454 + Charlie8 DNA MER1_type 951 1072 -1345 1617 196 53 76 chr11 121785257 121785706 -28997847 + MLT1D LTR MaLR 7 445 -60 622 258 302 28 chr11 121785732 121786143 -28997410 + Charlie8 DNA MER1_type 1169 1719 -698 1866 134 4 4 chr11 121786143 121786411 -28997142 + AluSq SINE Alu 1 268 -45 622 258 302 28 chr11 121786411 121786456 -28997097 + Charlie8 DNA MER1_type 1719 1750 -667 596 307 79 11 chr11 121786642 121786692 -28996861 + Charlie8 DNA MER1_type 1713 1758 -659 2273 83 7 3 chr11 121786692 121786992 -28996561 - AluSg SINE Alu -9 301 1 596 307 79 11 chr11 121786992 121787221 -28996332 + Charlie8 DNA MER1_type 1758 2011 -406 567 304 119 26 chr11 121787291 121787864 -28995689 - L1MEc LINE L1 -3379 2836 2211 796 270 83 75 chr11 121787965 121788446 -28995107 - MLT1J LTR MaLR 0 511 27 1069 236 63 40 chr11 121788685 121788986 -28994567 - MLT1E LTR MaLR 0 593 286 690 199 91 34 chr11 121789051 121789227 -28994326 + Tigger3b DNA MER2_type 2 187 -1044 5625 131 30 16 chr11 121789227 121789465 -28994088 + Tigger3b DNA MER2_type 290 523 -2505 2220 112 0 16 chr11 121789465 121789779 -28993774 - AluY SINE Alu 0 311 3 5625 131 30 16 chr11 121789779 121790469 -28993084 + Tigger3b DNA MER2_type 523 1231 0 432 243 72 22 chr11 121790478 121790659 -28992894 - L1MEc LINE L1 -5111 1285 1096 241 201 43 92 chr11 121790682 121790846 -28992707 + L1M4 LINE L1 2852 3007 -3139 30 27 0 0 chr11 121790859 121790896 -28992657 + AT_rich Low_complexity Low_complexity 1 37 0 1248 193 4 56 chr11 121790933 121791202 -28992351 - AluJo SINE Alu -55 257 3 1403 113 21 122 chr11 121791456 121791656 -28991897 + LTR12 LTR ERV1 1 220 -2218 2164 85 0 7 chr11 121791656 121791958 -28991595 - AluY SINE Alu 0 304 5 1403 113 21 122 chr11 121791958 121792074 -28991479 + LTR12 LTR ERV1 220 1985 -453 778 196 73 54 chr11 121792116 121792672 -28990881 + MER4A-int LTR ERV1 1 692 -5906 324 324 19 66 chr11 121792674 121792887 -28990666 + MER4A-int LTR ERV1 374 576 -6182 314 214 0 29 chr11 121792999 121793069 -28990484 + MER4A-int LTR ERV1 743 810 -5788 2296 116 0 0 chr11 121793777 121794080 -28989473 + AluY SINE Alu 1 303 -8 2226 120 0 13 chr11 121794528 121794844 -28988709 - AluSx SINE Alu 0 312 1 841 298 61 69 chr11 121796023 121796191 -28987362 + MER4A-int LTR ERV1 154 322 -8271 7353 115 22 21 chr11 121796191 121797261 -28986292 - MER11C LTR ERVK 0 1071 1 841 298 61 69 chr11 121797261 121798094 -28985459 + MER4A-int LTR ERV1 322 4514 -4079 401 280 76 78 chr11 121798186 121798653 -28984900 + MER4A-int LTR ERV1 3374 4614 -3069 742 342 41 42 chr11 121799221 121800011 -28983542 + MER4A-int LTR ERV1 2147 2897 -1750 1219 325 105 20 chr11 121800318 121801286 -28982267 + MER4A-int LTR ERV1 5633 6683 -439 207 69 0 0 chr11 121801411 121801440 -28982113 + (TAA)n Simple_repeat Simple_repeat 3 31 0 381 240 44 113 chr11 121801661 121801890 -28981663 + MER4A-int LTR ERV1 6386 6598 0 1610 168 46 46 chr11 121801892 121802238 -28981315 + MER4A LTR ERV1 1 346 -318 572 163 199 21 chr11 121802375 121802516 -28981037 + MER4C LTR ERV1 300 465 0 * 791 233 42 54 chr11 121802516 121802748 -28980805 + MLT1A1 LTR MaLR 137 365 0 922 165 0 0 chr11 121802792 121802925 -28980628 + FLAM_C SINE Alu 1 133 0 196 292 22 45 chr11 121803201 121803290 -28980263 - L2 LINE L2 -4 3268 3182 1187 128 0 0 chr11 121803681 121803853 -28979700 + AluSg/x SINE Alu 126 297 -13 201 359 50 19 chr11 121803992 121804151 -28979402 - MIR SINE MIR -75 187 24 500 338 44 4 chr11 121805694 121805919 -28977634 + MIR SINE MIR 17 250 -12 324 0 0 0 chr11 121805928 121805964 -28977589 + (CAG)n Simple_repeat Simple_repeat 2 37 0 1062 189 10 24 chr11 121806739 121806945 -28976608 - MER3 DNA MER1_type -1 208 6 188 306 0 0 chr11 121807089 121807138 -28976415 - MIR SINE MIR -56 206 158 22 0 0 0 chr11 121807217 121807239 -28976314 + AT_rich Low_complexity Low_complexity 1 22 0 448 124 21 31 chr11 121807246 121807343 -28976210 - L1PB2 LINE L1 -2 6149 6054 1659 156 0 0 chr11 121807344 121807594 -28975959 - AluSx SINE Alu -61 251 2 181 285 146 73 chr11 121808022 121808187 -28975366 + L2 LINE L2 2196 2372 -942 270 318 12 0 chr11 121808655 121808740 -28974813 + MIR3 SINE MIR 116 201 -7 2340 94 13 0 chr11 121809161 121809459 -28974094 - AluSx SINE Alu -10 302 1 1562 170 15 84 chr11 121809545 121809880 -28973673 - AluJo SINE Alu 0 312 1 1633 186 3 17 chr11 121809880 121810171 -28973382 - AluJo SINE Alu -19 293 7 998 180 0 37 chr11 121810392 121810581 -28972972 + AluJb SINE Alu 1 182 -130 651 185 75 135 chr11 121811325 121811525 -28972028 + MER5A DNA MER1_type 2 189 0 1971 140 7 0 chr11 121811834 121812120 -28971433 - AluJb SINE Alu -24 288 1 328 287 43 26 chr11 121812210 121812325 -28971228 - MIR SINE MIR -95 167 51 784 61 0 61 chr11 121812338 121812469 -28971084 - L1P4 LINE L1 -716 5450 5328 * 5096 141 58 9 chr11 121812465 121813255 -28970298 - L1PA16 LINE L1 -1 6165 5324 1745 145 6 122 chr11 121813255 121813592 -28969961 - AluSx SINE Alu -3 299 2 5096 141 58 9 chr11 121813592 121813724 -28969829 - L1PA16 LINE L1 -842 5324 5200 2117 129 3 7 chr11 121813726 121814028 -28969525 - AluSx SINE Alu -8 304 4 2007 125 4 7 chr11 121814052 121814333 -28969220 - AluSg SINE Alu -30 280 1 2260 219 22 7 chr11 121814333 121814873 -28968680 - L1P LINE L1 -815 5331 4784 1614 230 44 2 chr11 121814863 121815319 -28968234 - L1 LINE L1 -2757 3389 2915 * 2187 135 49 23 chr11 121815722 121816070 -28967483 + THE1B LTR MaLR 6 362 -2 12699 84 11 1 chr11 121816072 121817637 -28965916 + THE1B-int LTR MaLR 1 1580 0 2214 117 53 39 chr11 121817637 121817996 -28965557 + THE1B LTR MaLR 1 364 0 2240 115 38 36 chr11 121818206 121818265 -28965288 - L1P5 LINE L1 -632 5524 5467 2283 101 0 13 chr11 121818265 121818571 -28964982 - AluSq SINE Alu -11 302 1 2240 115 38 36 chr11 121818571 121819144 -28964409 - L1P5 LINE L1 -689 5467 4890 2162 120 7 0 chr11 121819162 121819454 -28964099 + AluSx SINE Alu 3 296 -16 882 129 0 0 chr11 121819454 121819594 -28963959 + (TA)n Simple_repeat Simple_repeat 2 141 0 1218 178 5 9 chr11 121819595 121819808 -28963745 + MER66B LTR ERV1 275 486 0 516 167 0 10 chr11 121819809 121819911 -28963642 - L1 LINE L1 -1488 4658 4558 764 220 91 29 chr11 121820229 121820470 -28963083 - MER112 DNA MER1_type 0 256 1 643 253 12 12 chr11 121820489 121820651 -28962902 + MIR SINE MIR 44 205 -57 1147 316 120 40 chr11 121821200 121821721 -28961832 + L2 LINE L2 2160 2638 -675 2019 151 0 3 chr11 121821721 121822020 -28961533 + AluSg SINE Alu 1 298 -12 1503 127 7 94 chr11 121822020 121822295 -28961258 + AluSc SINE Alu 47 297 -12 1147 316 120 40 chr11 121822295 121822776 -28960777 + L2 LINE L2 2637 3246 -67 1192 112 52 145 chr11 121824225 121824467 -28959086 - L1MA7 LINE L1 -2 6289 6091 2045 150 0 0 chr11 121824467 121824753 -28958800 - AluSx SINE Alu -26 286 1 1192 112 52 145 chr11 121824753 121824875 -28958678 - L1MA7 LINE L1 -200 6091 5959 3155 98 13 13 chr11 121824879 121825351 -28958202 - MER1A DNA MER1_type 0 529 58 222 254 0 0 chr11 121825610 121825677 -28957876 + (TA)n Simple_repeat Simple_repeat 1 67 0 3462 72 11 0 chr11 121826218 121826689 -28956864 + L1PA10 LINE L1 5448 5923 -245 362 141 0 0 chr11 121826691 121826755 -28956798 - L1M4 LINE L1 -389 5785 5722 1881 214 21 36 chr11 121826756 121827313 -28956240 + L1ME1 LINE L1 4844 5392 -754 1296 224 20 29 chr11 121827532 121827880 -28955673 + L1ME1 LINE L1 5766 6110 -56 2193 115 6 3 chr11 121827880 121828192 -28955361 + AluSq SINE Alu 1 313 0 315 289 181 26 chr11 121829016 121829248 -28954305 + L3b LINE CR1 1105 1372 -211 237 305 85 64 chr11 121829332 121829473 -28954080 + MIR3 SINE MIR 43 186 -22 511 259 80 80 chr11 121829482 121829744 -28953809 - MIR SINE MIR 0 262 1 2078 102 25 0 chr11 121829825 121830125 -28953428 - AluSx SINE Alu 0 307 1 582 282 246 36 chr11 121830421 121830840 -28952713 + L3 LINE CR1 1043 1549 -28 209 327 0 0 chr11 121830843 121830895 -28952658 + L2 LINE L2 3219 3270 -2 2015 133 30 10 chr11 121831332 121831634 -28951919 - AluSx SINE Alu -4 308 1 23 68 0 0 chr11 121832552 121832596 -28950957 + AT_rich Low_complexity Low_complexity 1 44 0 2274 92 3 0 chr11 121833436 121833730 -28949823 - AluSg SINE Alu -15 295 1 686 211 14 0 chr11 121834022 121834164 -28949389 + MIR SINE MIR 117 260 -2 328 299 204 15 chr11 121834191 121834392 -28949161 - MIR SINE MIR -13 249 11 220 277 80 54 chr11 121835532 121835644 -28947909 - MIR SINE MIR -77 185 71 500 190 102 32 chr11 121835845 121836039 -28947514 - HsTC2 DNA Tc2 -7 1891 1679 2045 160 0 3 chr11 121836039 121836351 -28947202 + AluJb SINE Alu 1 311 -1 500 190 102 32 chr11 121836351 121836372 -28947181 - HsTC2 DNA Tc2 -219 1679 1661 * 661 241 161 17 chr11 121836367 121836716 -28946837 - HsTC2 DNA Tc2 -1492 406 8 184 342 92 0 chr11 121837657 121837733 -28945820 - MIR SINE MIR -92 116 34 285 240 93 62 chr11 121838458 121838587 -28944966 - L2 LINE L2 -6 3307 3175 1879 159 0 45 chr11 121838724 121839038 -28944515 - AluJb SINE Alu -12 300 1 1681 194 46 33 chr11 121839072 121839463 -28944090 - MSTD LTR MaLR 0 396 1 1154 218 114 30 chr11 121839783 121840260 -28943293 - MLT1G LTR MaLR 0 582 69 2107 117 0 7 chr11 121841819 121842117 -28941436 - AluSx SINE Alu -16 296 1 220 375 62 0 chr11 121842135 121842231 -28941322 + L2 LINE L2 3211 3312 -1 306 232 95 11 chr11 121842972 121843067 -28940486 + LTR37B LTR ERV1 9 111 -357 688 259 6 0 chr11 121843102 121843268 -28940285 + MER58B DNA MER1_type 175 341 0 657 236 25 41 chr11 121843375 121843617 -28939936 + LTR37B LTR ERV1 196 433 -35 222 254 0 60 chr11 121843677 121843744 -28939809 + MIR SINE MIR 98 160 -102 2151 64 53 11 chr11 121844483 121844766 -28938787 - AluY SINE Alu -16 295 1 2203 113 13 7 chr11 121844860 121845170 -28938383 - AluSx SINE Alu 0 312 1 303 253 33 55 chr11 121845431 121845522 -28938031 + L2 LINE L2 3225 3313 0 243 245 66 106 chr11 121847200 121847302 -28936251 - Charlie8 DNA MER1_type -103 238 142 2475 79 0 0 chr11 121847302 121847607 -28935946 - AluY SINE Alu -6 305 1 243 245 66 106 chr11 121847607 121847655 -28935898 - Charlie8 DNA MER1_type -199 142 94 1860 170 0 34 chr11 121847790 121848113 -28935440 - AluJb SINE Alu 0 312 1 332 348 106 48 chr11 121848615 121848991 -28934562 + L2 LINE L2 2854 3251 -21 391 276 61 49 chr11 121849310 121849759 -28933794 - L2 LINE L2 -19 3294 2708 340 311 118 6 chr11 121849755 121849916 -28933637 - MIR SINE MIR -25 237 59 * 273 288 137 22 chr11 121849918 121850057 -28933496 + MIR SINE MIR 102 256 -6 254 269 64 0 chr11 121850199 121850277 -28933276 + MIR3 SINE MIR 111 193 -15 471 287 48 30 chr11 121851573 121851740 -28931813 - MER5A DNA MER1_type -5 184 15 363 237 85 17 chr11 121852077 121852195 -28931358 + L2 LINE L2 3183 3308 -5 660 315 30 17 chr11 121852658 121852893 -28930660 + MIR SINE MIR 8 245 -17 249 182 76 45 chr11 121852994 121853060 -28930493 + MIR SINE MIR 84 151 -111 264 244 22 44 chr11 121854884 121854974 -28928579 - MLT1J2 LTR MaLR -21 429 342 339 157 14 14 chr11 121855065 121855135 -28928418 - MLT1J2 LTR MaLR -314 136 67 231 288 14 14 chr11 121855198 121855271 -28928282 - L3 LINE CR1 -894 683 611 189 0 0 0 chr11 121855642 121855663 -28927890 + (A)n Simple_repeat Simple_repeat 1 21 0 2442 98 0 0 chr11 121855799 121856105 -28927448 - AluSq SINE Alu -7 306 1 217 222 26 26 chr11 121856203 121856320 -28927233 + GA-rich Low_complexity Low_complexity 2 118 0 3282 206 24 7 chr11 121856766 121857402 -28926151 - L1 LINE L1 -1095 5051 4396 207 0 0 0 chr11 121857402 121857425 -28926128 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3282 206 24 7 chr11 121857425 121857622 -28925931 - L1 LINE L1 -1750 4396 4204 3111 201 113 13 chr11 121857755 121859299 -28924254 + L1ME1 LINE L1 4503 6332 -2 296 259 24 12 chr11 121859572 121859657 -28923896 + MIR SINE MIR 33 118 -144 324 113 75 0 chr11 121859657 121859710 -28923843 + MER101 LTR ERV1 1 57 -417 1859 145 128 3 chr11 121859710 121860061 -28923492 + MER101 LTR ERV1 25 419 -55 373 264 36 9 chr11 121860083 121860193 -28923360 + MIR SINE MIR 150 262 0 358 288 86 21 chr11 121860285 121860518 -28923035 + L1ME4a LINE L1 5756 6003 -118 193 275 46 83 chr11 121861040 121861149 -28922404 - L3 LINE CR1 -37 1540 1436 2520 109 29 5 chr11 121861787 121862162 -28921391 - L1PA11 LINE L1 0 6174 5791 2323 104 3 0 chr11 121862265 121862574 -28920979 + AluSx SINE Alu 1 310 -2 254 293 45 52 chr11 121862641 121862822 -28920731 - L1ME4a LINE L1 -209 5912 5732 740 183 148 0 chr11 121862822 121862964 -28920589 + FRAM SINE Alu 1 163 -3 254 293 45 52 chr11 121862964 121863069 -28920484 - L1ME4a LINE L1 -389 5732 5628 310 212 242 20 chr11 121863175 121863274 -28920279 - MIR SINE MIR -108 154 34 1743 198 24 59 chr11 121863285 121863710 -28919843 + MLT2D LTR ERVL 3 412 -2 381 207 23 0 chr11 121863726 121863813 -28919740 - L1ME4a LINE L1 -511 5610 5522 441 251 51 74 chr11 121864197 121864372 -28919181 - MER5B DNA MER1_type -1 177 7 249 0 73 0 chr11 121864929 121864970 -28918583 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 890 101 0 17 chr11 121864993 121865112 -28918441 - AluSp SINE Alu -76 237 121 723 183 8 0 chr11 121865178 121865298 -28918255 - AluSq/x SINE Alu -192 121 1 469 178 203 8 chr11 121865301 121865419 -28918134 - MER5B DNA MER1_type -37 141 1 180 0 0 0 chr11 121865495 121865515 -28918038 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 316 293 23 38 chr11 121865974 121866107 -28917446 + L2 LINE L2 3168 3298 -15 2413 72 0 0 chr11 121866145 121866437 -28917116 - AluSc SINE Alu -13 296 5 470 304 21 82 chr11 121867240 121867569 -28915984 + L2 LINE L2 2590 2898 -416 1462 224 45 85 chr11 121867682 121868319 -28915234 - LTR9 LTR ERV1 0 612 1 391 231 39 107 chr11 121868490 121868548 -28915005 + L1MEc LINE L1 1937 1997 -4399 2261 115 0 0 chr11 121868548 121868844 -28914709 + AluSg SINE Alu 1 296 -14 391 231 39 107 chr11 121868844 121869088 -28914465 + L1MEc LINE L1 1997 2216 -4180 2648 149 18 81 chr11 121869088 121869633 -28913920 - MLT2B2 LTR ERVL 0 515 5 391 231 39 107 chr11 121869633 121869667 -28913886 + L1MEc LINE L1 2216 2251 -4145 1462 229 88 12 chr11 121869677 121870087 -28913466 - MLT1C LTR MaLR -26 441 1 2208 116 0 0 chr11 121870115 121870418 -28913135 + AluSc SINE Alu 1 303 -6 1723 226 86 7 chr11 121870420 121870964 -28912589 + L1MEc LINE L1 2234 2820 -3395 548 241 28 57 chr11 121871157 121871298 -28912255 - L2 LINE L2 0 3313 3177 191 175 100 0 chr11 121871279 121871319 -28912234 + MIR SINE MIR 132 175 -87 * 1682 187 17 3 chr11 121873226 121873526 -28910027 - AluJb SINE Alu -8 304 1 1379 170 92 3 chr11 121874393 121874699 -28908854 - L1MB7 LINE L1 -38 6146 5814 8250 198 36 30 chr11 121874816 121876288 -28907265 - L1MB4 LINE L1 -75 6341 4879 1473 213 3 10 chr11 121876288 121876579 -28906974 + AluJo SINE Alu 1 289 -23 8250 198 36 30 chr11 121876579 121877333 -28906220 - L1MB4 LINE L1 -1537 4879 4131 2401 76 0 3 chr11 121877333 121877635 -28905918 - AluY SINE Alu -6 305 5 8250 198 36 30 chr11 121877635 121878428 -28905125 - L1MB4 LINE L1 -2285 4131 3309 1538 221 65 42 chr11 121878440 121879271 -28904282 - L1MB4 LINE L1 -3629 2753 1919 195 42 0 0 chr11 121879329 121879353 -28904200 + (TG)n Simple_repeat Simple_repeat 1 24 0 583 239 27 26 chr11 121880038 121880284 -28903269 + MER5C DNA MER1_type 3 324 0 445 279 86 0 chr11 121880292 121880432 -28903121 - MIR SINE MIR -105 157 6 22 35 0 0 chr11 121881149 121881178 -28902375 + AT_rich Low_complexity Low_complexity 1 29 0 382 288 27 0 chr11 121881874 121881985 -28901568 - MIR SINE MIR -77 185 72 225 0 0 0 chr11 121883374 121883399 -28900154 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 521 254 6 75 chr11 121884356 121884529 -28899024 - MER5B DNA MER1_type -1 177 17 371 125 192 87 chr11 121884973 121885020 -28898533 - MER103 DNA DNA -50 116 75 2149 123 3 16 chr11 121885020 121885336 -28898217 - AluSx SINE Alu 0 312 1 371 125 192 87 chr11 121885336 121885392 -28898161 - MER103 DNA DNA -91 75 2 1821 190 156 26 chr11 121885476 121885944 -28897609 + MLT1F LTR MaLR 14 542 0 340 219 148 0 chr11 121885951 121886087 -28897466 + MIR SINE MIR 103 262 0 408 327 65 30 chr11 121886538 121886737 -28896816 + L2 LINE L2 2538 2743 -571 201 294 47 0 chr11 121886795 121886880 -28896673 + L2 LINE L2 2871 2959 -313 455 366 95 23 chr11 121887241 121887714 -28895839 + L2 LINE L2 2248 2754 -560 294 143 0 0 chr11 121889128 121889177 -28894376 + (TAGG)n Simple_repeat Simple_repeat 3 51 0 2215 129 3 3 chr11 121889319 121889629 -28893924 + AluSx SINE Alu 1 310 -2 274 273 86 23 chr11 121889760 121889888 -28893665 + MIR SINE MIR 94 229 -33 410 294 5 81 chr11 121890349 121890483 -28893070 + MIR SINE MIR 12 155 -107 2066 114 7 11 chr11 121890483 121890764 -28892789 + AluSx SINE Alu 1 280 -32 192 40 0 0 chr11 121890766 121890791 -28892762 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 410 294 5 81 chr11 121890791 121890850 -28892703 + MIR SINE MIR 156 193 -69 2244 85 0 31 chr11 121891042 121891336 -28892217 - AluSc SINE Alu -24 285 1 218 266 0 0 chr11 121891337 121891401 -28892152 + MIR SINE MIR 45 108 -100 641 274 44 22 chr11 121892002 121892228 -28891325 - MIR SINE MIR -27 235 5 8696 63 3 3 chr11 121892457 121893528 -28890025 + MER11C LTR ERVK 1 1071 0 1537 211 3 22 chr11 121894292 121894610 -28888943 + AluJo SINE Alu 1 312 0 936 163 70 8 chr11 121894740 121894931 -28888622 + MLT1G LTR MaLR 344 590 0 422 257 86 21 chr11 121895711 121895851 -28887702 - MIR3 SINE MIR -18 190 42 2227 112 0 3 chr11 121897665 121897969 -28885584 - AluSx SINE Alu -9 303 1 183 216 0 0 chr11 121898060 121898097 -28885456 + L2 LINE L2 3022 3058 -214 663 256 26 26 chr11 121898483 121898710 -28884843 + MER112 DNA MER1_type 3 229 -31 952 273 86 63 chr11 121898741 121898900 -28884653 - L1MC4 LINE L1 -3 8039 7885 2710 229 54 22 chr11 121898900 121899533 -28884020 + MER82 DNA MER2_type 1 653 0 952 273 86 63 chr11 121899533 121900040 -28883513 - L1MC4 LINE L1 -157 7885 7358 1920 156 0 17 chr11 121900056 121900358 -28883195 + AluJo SINE Alu 5 301 -11 385 264 27 61 chr11 121901084 121901232 -28882321 - MIR SINE MIR -73 189 47 6295 95 26 3 chr11 121901441 121902864 -28880689 - L1PA15 LINE L1 -6 6159 4724 5044 206 81 4 chr11 121902864 121904009 -28879544 - L1PA15 LINE L1 -1919 4227 2995 483 268 177 9 chr11 121904074 121904294 -28879259 + MIR SINE MIR 6 262 0 384 352 17 22 chr11 121904975 121905154 -28878399 + (TCTG)n Simple_repeat Simple_repeat 3 180 0 459 309 34 14 chr11 121905557 121905764 -28877789 + MIR SINE MIR 37 247 -15 1832 158 25 0 chr11 121906925 121907203 -28876350 - AluJb SINE Alu -27 285 1 2228 137 106 8 chr11 121907255 121907643 -28875910 + MSTA LTR MaLR 1 426 -2 1730 167 0 37 chr11 121907644 121907944 -28875609 + AluJo SINE Alu 2 290 -22 802 236 0 13 chr11 121907949 121908106 -28875447 - MER8 DNA MER2_type -79 160 6 476 280 142 83 chr11 121908887 121909049 -28874504 - MLT1J LTR MaLR -9 502 351 3641 113 2 4 chr11 121909049 121909561 -28873992 - MER9 LTR ERVK 0 511 1 476 280 142 83 chr11 121909561 121909870 -28873683 - MLT1J LTR MaLR -160 351 3 2495 152 19 26 chr11 121910325 121910754 -28872799 - MSTB LTR MaLR 0 426 1 336 242 75 143 chr11 121910941 121911349 -28872204 + L1MC4a LINE L1 5650 6019 -102 2226 120 0 3 chr11 121911349 121911650 -28871903 - AluSx SINE Alu -12 300 1 336 242 75 143 chr11 121911650 121911745 -28871808 + L1MC4a LINE L1 6019 6119 -2 230 241 214 7 chr11 121911766 121911911 -28871642 + L1ME4a LINE L1 5944 6118 -3 433 356 27 8 chr11 121912198 121912459 -28871094 - L3 LINE CR1 -4 1573 1308 354 200 0 15 chr11 121912837 121912902 -28870651 + LTR67 LTR ERVL 494 557 0 255 274 95 108 chr11 121912902 121913198 -28870355 - L3 LINE CR1 -594 983 692 242 211 282 0 chr11 121913262 121913333 -28870220 + L1ME1 LINE L1 5484 5574 -588 22 0 0 0 chr11 121913344 121913366 -28870187 + AT_rich Low_complexity Low_complexity 1 22 0 2178 117 7 3 chr11 121913377 121913677 -28869876 + AluSc SINE Alu 2 302 -7 4274 127 41 70 chr11 121913728 121914537 -28869016 - LTR1 LTR ERV1 0 785 1 324 307 86 13 chr11 121914619 121914803 -28868750 + L1ME1 LINE L1 5769 5965 -205 514 321 62 10 chr11 121915020 121915229 -28868324 + MIR SINE MIR 32 251 -11 1232 214 74 34 chr11 121915773 121916124 -28867429 + MLT1A1 LTR MaLR 1 365 0 2449 261 28 72 chr11 121916746 121917656 -28865897 + L1PA13 LINE L1 3 871 -5916 7258 223 40 27 chr11 121917728 121920559 -28862994 + L1PA13 LINE L1 1245 4116 -2681 253 246 14 0 chr11 121920690 121920759 -28862794 - MIR SINE MIR -89 173 104 272 156 5 106 chr11 121922148 121922347 -28861206 + (TAGTG)n Simple_repeat Simple_repeat 1 179 0 310 135 5 110 chr11 121922402 121922602 -28860951 + (TAGTG)n Simple_repeat Simple_repeat 1 179 0 1399 185 57 34 chr11 121922768 121923066 -28860487 - AluJo SINE Alu -4 308 4 617 248 0 7 chr11 121923068 121923205 -28860348 - AluJo SINE Alu -176 136 1 2649 266 76 26 chr11 121923311 121923544 -28860009 - L1ME LINE L1 -4481 1599 1379 2319 107 0 7 chr11 121923544 121923853 -28859700 + AluSq SINE Alu 1 307 -6 2649 266 76 26 chr11 121923853 121925042 -28858511 - L1ME LINE L1 -4701 1379 139 2189 213 31 35 chr11 121925091 121925634 -28857919 - L1MC2 LINE L1 0 7967 6154 204 40 0 0 chr11 121926599 121926624 -28856929 + (TTG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr11 121927026 121927048 -28856505 + AT_rich Low_complexity Low_complexity 1 22 0 1820 97 0 26 chr11 121927132 121927401 -28856152 + L1PA8A LINE L1 5857 6118 -13 21 36 0 0 chr11 121927681 121927709 -28855844 + AT_rich Low_complexity Low_complexity 1 28 0 2857 19 0 0 chr11 121927776 121928092 -28855461 - AluYb8 SINE Alu -2 316 1 764 236 199 23 chr11 121929173 121929389 -28854164 - MIR SINE MIR 0 262 9 2177 95 0 14 chr11 121929854 121930148 -28853405 - AluSq SINE Alu -23 290 1 280 311 183 12 chr11 121931973 121932179 -28851374 + MIR SINE MIR 19 257 -5 1013 263 63 11 chr11 121932469 121932754 -28850799 + MLT1F1 LTR MaLR 268 567 0 819 330 124 7 chr11 121932770 121933222 -28850331 + L2 LINE L2 2808 3312 -1 316 308 41 63 chr11 121933692 121933913 -28849640 - L1MC4 LINE L1 -1 8041 7826 541 271 7 0 chr11 121933943 121934102 -28849451 - L1ME2 LINE L1 -1 6165 6003 1865 176 65 56 chr11 121934103 121934552 -28849001 + LTR55 LTR ERV 1 453 -95 2762 199 52 70 chr11 121934583 121935161 -28848392 - L1ME2 LINE L1 -144 6020 5434 2190 121 3 0 chr11 121935161 121935459 -28848094 - AluSx SINE Alu -13 299 1 2762 199 52 70 chr11 121935459 121936275 -28847278 - L1ME2 LINE L1 -730 5434 4651 588 170 0 0 chr11 121936279 121936379 -28847174 + Tigger5 DNA MER2_type 25 124 -2199 575 156 10 0 chr11 121936376 121936472 -28847081 + Tigger5 DNA MER2_type 2227 2323 0 * 212 152 65 22 chr11 121937120 121937166 -28846387 - MIR SINE MIR -84 178 131 248 232 134 71 chr11 121937343 121937455 -28846098 + MIR3 SINE MIR 51 169 -39 886 211 6 11 chr11 121937987 121938162 -28845391 + MER5A DNA MER1_type 7 180 -9 671 254 132 0 chr11 121938870 121939067 -28844486 - MER58A DNA MER1_type -1 223 1 200 296 278 21 chr11 121940612 121940826 -28842727 - L2 LINE L2 -341 2973 2815 1486 139 105 55 chr11 121940826 121941170 -28842383 + MER46B DNA MER2_type 1 236 0 200 296 278 21 chr11 121941170 121941289 -28842264 - L2 LINE L2 -499 2815 2554 3142 44 0 0 chr11 121941383 121941769 -28841784 + L1PA4 LINE L1 5770 6155 0 261 306 99 36 chr11 121941820 121941931 -28841622 - L2 LINE L2 -5 3267 3150 3037 175 29 37 chr11 121942201 121942824 -28840729 - L1MB5 LINE L1 -39 6135 5518 23 0 0 0 chr11 121942889 121942912 -28840641 + AT_rich Low_complexity Low_complexity 1 23 0 1254 45 0 0 chr11 121943515 121943670 -28839883 + L1PA5 LINE L1 5999 6153 -1 446 202 0 20 chr11 121944384 121944483 -28839070 + AluJ/FRAM SINE Alu 216 312 0 7513 231 28 2 chr11 121944893 121946754 -28836799 - L1PA16 LINE L1 -1837 4309 2401 5456 161 18 23 chr11 121946753 121947771 -28835782 + L1PA16 LINE L1 4325 5334 -832 * 2091 122 3 3 chr11 121947771 121948065 -28835488 - AluSx SINE Alu -18 294 1 5456 161 18 23 chr11 121948065 121948890 -28834663 + L1PA16 LINE L1 5334 6161 -5 220 195 398 35 chr11 121949573 121949686 -28833867 - L2 LINE L2 -519 2795 2642 354 271 7 65 chr11 121949768 121949923 -28833630 - L2 LINE L2 -686 2628 2483 500 254 204 36 chr11 121949957 121950291 -28833262 - L2 LINE L2 -1055 2259 1870 833 107 7 0 chr11 121950898 121951038 -28832515 + (TA)n Simple_repeat Simple_repeat 2 142 0 297 0 0 0 chr11 121951467 121951500 -28832053 + (TG)n Simple_repeat Simple_repeat 2 34 0 401 180 45 0 chr11 121952315 121952404 -28831149 - L1M4 LINE L1 -1679 4467 4375 466 285 62 7 chr11 121952668 121952812 -28830741 - L3 LINE CR1 -110 1467 1316 310 289 114 0 chr11 121953363 121953477 -28830076 - MIR SINE MIR -75 187 61 191 132 105 0 chr11 121953515 121953553 -28830000 + L2 LINE L2 3230 3271 -1 445 59 0 94 chr11 121954108 121954193 -28829360 - L1PA6 LINE L1 0 6154 6078 416 223 55 30 chr11 121954193 121954395 -28829158 + L1M4 LINE L1 3063 3269 -2877 540 284 25 0 chr11 121954400 121954597 -28828956 + L1M4 LINE L1 3418 3619 -2527 427 285 68 39 chr11 121954955 121955236 -28828317 + MLT1L LTR MaLR 164 452 -163 368 288 56 0 chr11 121955474 121955599 -28827954 - L1MC/D LINE L1 -2210 5598 5467 739 239 77 70 chr11 121955696 121956173 -28827380 - MLT1G LTR MaLR 0 590 19 271 268 39 31 chr11 121956466 121956593 -28826960 - L1MC/D LINE L1 -1537 4609 4482 429 348 100 0 chr11 121957633 121957843 -28825710 + MIR SINE MIR 32 262 0 411 200 0 0 chr11 121958589 121958654 -28824899 - AluS SINE Alu -246 65 1 1392 179 18 0 chr11 121958656 121958885 -28824668 + MLT1A1 LTR MaLR 132 364 -1 243 272 143 27 chr11 121958905 121959052 -28824501 + HAL1 LINE L1 1489 1652 -855 833 160 15 0 chr11 121960236 121960367 -28823186 - FLAM_C SINE Alu 0 133 1 205 321 18 36 chr11 121960689 121960801 -28822752 - MIR SINE MIR -65 143 34 203 328 47 0 chr11 121961056 121961120 -28822433 + L2 LINE L2 3241 3307 -6 6363 116 22 6 chr11 121961978 121965240 -28818313 + L1PA10 LINE L1 2698 6158 -10 186 262 0 24 chr11 121965520 121965562 -28817991 + MER5A DNA MER1_type 147 187 -2 231 206 98 33 chr11 121966218 121966310 -28817243 - L2 LINE L2 -70 3243 3146 415 245 94 9 chr11 121966492 121966598 -28816955 + L2 LINE L2 3195 3309 -4 263 245 196 61 chr11 121966924 121967087 -28816466 + L2 LINE L2 3036 3220 -93 2632 250 55 82 chr11 121967087 121968172 -28815381 - L1MCc LINE L1 -5326 1097 42 2075 120 7 7 chr11 121968640 121968941 -28814612 + AluSx SINE Alu 1 301 -11 435 38 0 0 chr11 121968948 121969001 -28814552 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 705 293 33 21 chr11 121969046 121969288 -28814265 + MIR SINE MIR 18 262 0 4267 12 0 0 chr11 121970004 121970689 -28812864 - L1PA2 LINE L1 -418 5737 5053 3534 22 0 0 chr11 121970689 121971095 -28812458 + L1PA2 LINE L1 5744 6155 0 842 222 27 11 chr11 121971121 121971306 -28812247 - MER5A DNA MER1_type 0 189 2 194 309 85 21 chr11 121971888 121971982 -28811571 + MIR SINE MIR 45 144 -64 1002 278 125 10 chr11 121972719 121973167 -28810386 + L1MC5 LINE L1 5444 5795 -371 27 81 0 0 chr11 121973331 121973393 -28810160 + AT_rich Low_complexity Low_complexity 1 62 0 463 195 11 32 chr11 121973817 121973959 -28809594 + L1MC5 LINE L1 6638 6818 -1143 * 4210 206 78 79 chr11 121973953 121975474 -28808079 + L1M4 LINE L1 2862 4382 -1764 2495 74 0 0 chr11 121975474 121975784 -28807769 + AluY SINE Alu 1 310 -1 4210 206 78 79 chr11 121975784 121976015 -28807538 + L1M4 LINE L1 4382 4612 -1534 761 229 119 62 chr11 121976025 121976396 -28807157 + L1ME4a LINE L1 2770 3161 -2985 1359 273 48 9 chr11 121976433 121976891 -28806662 + L1ME1 LINE L1 93 568 -5828 290 252 48 29 chr11 121976904 121977007 -28806546 + L1ME1 LINE L1 4281 4385 -1830 195 184 0 0 chr11 121977046 121977084 -28806469 + (CATATA)n Simple_repeat Simple_repeat 6 43 0 1120 230 69 16 chr11 121977093 121977527 -28806026 + L1ME1 LINE L1 4400 4856 -1359 1466 144 26 30 chr11 121977579 121977843 -28805710 + Tigger1 DNA MER2_type 5 267 -2151 10244 117 73 29 chr11 121977845 121979400 -28804153 + Tigger1 DNA MER2_type 626 2267 -151 1735 162 13 10 chr11 121979400 121979709 -28803844 + AluJb SINE Alu 3 312 0 10244 117 73 29 chr11 121979709 121979869 -28803684 + Tigger1 DNA MER2_type 2267 2418 0 1789 232 38 27 chr11 121979871 121980268 -28803285 + L1ME1 LINE L1 4927 5318 -917 854 185 67 5 chr11 121980268 121980463 -28803090 + MER3 DNA MER1_type 3 209 0 1789 232 38 27 chr11 121980463 121981016 -28802537 + L1ME1 LINE L1 5318 5885 -350 557 253 90 34 chr11 121981025 121981258 -28802295 + L1ME1 LINE L1 5985 6230 -5 1352 244 103 6 chr11 121981270 121981815 -28801738 + L1ME4a LINE L1 3146 3743 -2403 * 1678 221 53 0 chr11 121981809 121982225 -28801328 + L1MC3 LINE L1 7348 7785 0 1476 218 60 41 chr11 121982214 121982769 -28800784 + L1ME4a LINE L1 3835 4399 -1747 * 1383 217 86 83 chr11 121982767 121983505 -28800048 + L1ME4a LINE L1 4735 5471 -691 * 1069 126 169 11 chr11 121983505 121983688 -28799865 - AluSc SINE Alu -10 299 88 1670 200 64 13 chr11 121983757 121984147 -28799406 + L1ME4a LINE L1 5487 5896 -270 333 262 99 17 chr11 121984143 121984376 -28799177 + L1M4 LINE L1 2367 2618 -3528 * 303 385 0 20 chr11 121984874 121984972 -28798581 + MIR SINE MIR 2 98 -164 2064 123 10 3 chr11 121984972 121985264 -28798289 - AluSc SINE Alu -15 294 1 303 385 0 20 chr11 121985264 121985313 -28798240 + MIR SINE MIR 98 146 -116 188 305 0 34 chr11 121985319 121985378 -28798175 + L2 LINE L2 3193 3249 -23 2131 125 25 25 chr11 121985401 121985760 -28797793 + MER46B DNA MER2_type 1 234 -2 836 64 0 18 chr11 121985964 121986074 -28797479 - L1PA7 LINE L1 -11 6143 6036 281 334 58 88 chr11 121986346 121986455 -28797098 + L2 LINE L2 2881 2992 -280 1571 146 91 67 chr11 121986455 121986784 -28796769 - MER1B DNA MER1_type 0 337 1 281 334 58 88 chr11 121986784 121986982 -28796571 + L2 LINE L2 2992 3179 -93 2617 101 30 3 chr11 121987312 121987677 -28795876 - THE1C LTR MaLR 0 375 1 252 206 0 15 chr11 121987713 121987781 -28795772 + L1ME4a LINE L1 6049 6115 -6 533 87 58 29 chr11 121987852 121987955 -28795598 - L1MA8 LINE L1 0 6291 6186 3878 164 60 44 chr11 121988246 121988416 -28795137 + L1MB7 LINE L1 5270 5436 -748 1611 189 31 0 chr11 121988416 121988702 -28794851 + AluJo SINE Alu 12 306 -6 3878 164 60 44 chr11 121988702 121989426 -28794127 + L1MB7 LINE L1 5436 6179 -5 1682 208 104 63 chr11 121989625 121989681 -28793872 - MLT1F LTR MaLR -10 532 480 1805 151 3 17 chr11 121989681 121990000 -28793553 - AluJb SINE Alu 0 315 1 1682 208 104 63 chr11 121990000 121990450 -28793103 - MLT1F LTR MaLR -62 480 3 26 0 0 0 chr11 121991114 121991140 -28792413 + AT_rich Low_complexity Low_complexity 1 26 0 744 204 177 18 chr11 121991140 121991360 -28792193 - MIR SINE MIR -2 260 6 199 342 114 25 chr11 121992442 121992600 -28790953 - L3b LINE CR1 -6 1577 1406 756 254 129 22 chr11 121993302 121993534 -28790019 - MIR SINE MIR -3 259 3 299 282 12 47 chr11 121993535 121993620 -28789933 + MIR SINE MIR 31 112 -150 465 271 115 16 chr11 121993804 121993996 -28789557 - MIR SINE MIR -44 218 8 190 302 0 0 chr11 121994543 121994596 -28788957 - L2 LINE L2 -4 3309 3257 346 65 0 0 chr11 121994694 121994740 -28788813 + L1MA5 LINE L1 6245 6290 -10 311 160 0 0 chr11 121994749 121994799 -28788754 - MIR SINE MIR -102 160 111 1367 233 14 0 chr11 121994859 121995147 -28788406 + MLT1A1 LTR MaLR 23 314 -51 2901 172 39 17 chr11 121995506 121996104 -28787449 + L1PA16 LINE L1 5546 6156 -10 252 230 150 18 chr11 121997442 121997555 -28785998 + L1ME4a LINE L1 5978 6105 -16 387 176 0 0 chr11 121997675 121997749 -28785804 + L1MB1 LINE L1 6084 6157 -11 210 191 103 29 chr11 121997764 121997832 -28785721 - MER5B DNA MER1_type -20 158 86 237 226 0 19 chr11 121997848 121997901 -28785652 + L3b LINE CR1 1528 1579 -4 193 115 0 0 chr11 121998067 121998093 -28785460 + (TA)n Simple_repeat Simple_repeat 1 26 0 261 119 0 0 chr11 121998101 121998143 -28785410 + (CA)n Simple_repeat Simple_repeat 1 42 0 1175 169 207 0 chr11 121998147 121998384 -28785169 - AluJo SINE Alu -16 286 1 1508 239 159 29 chr11 121998630 121999311 -28784242 - MER20B DNA MER1_type 0 783 15 22 35 0 0 chr11 121999547 121999576 -28783977 + AT_rich Low_complexity Low_complexity 1 29 0 2028 72 0 11 chr11 122000036 122000299 -28783254 - AluY SINE Alu -13 298 39 307 220 9 46 chr11 122000475 122000584 -28782969 + (TGAA)n Simple_repeat Simple_repeat 3 107 0 1263 151 23 5 chr11 122000633 122000851 -28782702 + MER50 LTR ERV1 1 222 -512 851 154 0 26 chr11 122000840 122000996 -28782557 + MER50 LTR ERV1 449 600 -134 * 209 358 179 5 chr11 122003680 122003870 -28779683 + L3b LINE CR1 1112 1334 -249 227 376 10 0 chr11 122004029 122004130 -28779423 + L3b LINE CR1 1365 1466 -117 448 294 16 8 chr11 122004340 122004466 -28779087 + MIR3 SINE MIR 66 192 -16 333 83 0 0 chr11 122005372 122005420 -28778133 + MADE1 DNA Mariner 1 48 -32 195 333 0 0 chr11 122005823 122005877 -28777676 + L2 LINE L2 3201 3254 -18 4353 182 40 8 chr11 122006149 122007361 -28776192 + L1MB8 LINE L1 4906 6153 -25 4639 159 23 15 chr11 122007635 122009137 -28774416 - L1PB4 LINE L1 -26 6832 5174 7319 212 23 3 chr11 122009138 122010817 -28772736 - L1PB4 LINE L1 -2175 4673 2961 193 373 13 0 chr11 122010833 122010908 -28772645 + L2 LINE L2 3197 3272 0 7694 18 5 0 chr11 122011625 122013132 -28770421 - L1PA3 LINE L1 0 6155 4641 7846 32 5 0 chr11 122013132 122014071 -28769482 + L1PA3 LINE L1 3700 4643 -1503 185 290 0 32 chr11 122014379 122014441 -28769112 + MIR SINE MIR 16 75 -133 327 264 0 0 chr11 122014490 122014581 -28768972 + (TA)n Simple_repeat Simple_repeat 1 91 0 265 299 248 0 chr11 122017292 122017409 -28766144 + MIR SINE MIR 34 179 -83 589 243 60 32 chr11 122018441 122018659 -28764894 - MARNA DNA Mariner -152 434 211 282 282 242 32 chr11 122018671 122018923 -28764630 + L2 LINE L2 2888 3192 -121 391 87 0 87 chr11 122018930 122018999 -28764554 - MER3 DNA MER1_type -4 205 143 3206 228 44 9 chr11 122019006 122019915 -28763638 + L1ME1 LINE L1 5119 6141 -25 571 196 21 42 chr11 122019915 122020058 -28763495 - MER3 DNA MER1_type -52 157 18 863 209 51 6 chr11 122020113 122020290 -28763263 + MER58A DNA MER1_type 37 221 -3 920 319 112 24 chr11 122020353 122021176 -28762377 - L2 LINE L2 -11 3302 2398 196 267 186 12 chr11 122021194 122021280 -28762273 - MIR SINE MIR -8 254 154 183 80 0 0 chr11 122021472 122021497 -28762056 + (A)n Simple_repeat Simple_repeat 1 25 0 309 272 193 41 chr11 122022776 122023144 -28760409 - L1PB4 LINE L1 -5831 1018 595 401 265 153 90 chr11 122023321 122024018 -28759535 + L1M2 LINE L1 547 1287 -5562 493 283 80 42 chr11 122025046 122025188 -28758365 + L2 LINE L2 3094 3248 -65 213 39 0 0 chr11 122025188 122025214 -28758339 + (TTG)n Simple_repeat Simple_repeat 2 27 0 493 283 80 42 chr11 122025214 122025283 -28758270 + L2 LINE L2 3248 3313 0 355 345 27 60 chr11 122025574 122025875 -28757678 + L2 LINE L2 2686 2976 -338 247 274 0 0 chr11 122025913 122025964 -28757589 + L2 LINE L2 3263 3313 0 1046 237 51 4 chr11 122026117 122026353 -28757200 - MIR SINE MIR -2 260 14 1503 168 82 29 chr11 122026932 122027212 -28756341 + AluJo SINE Alu 1 295 -17 246 252 149 56 chr11 122027224 122027331 -28756222 - L2 LINE L2 0 3272 3156 285 322 88 34 chr11 122027365 122027570 -28755983 + Charlie8 DNA MER1_type 2 217 -2200 477 274 279 20 chr11 122028001 122028500 -28755053 - L2 LINE L2 -1294 2020 1393 195 320 40 13 chr11 122028660 122028735 -28754818 - L2 LINE L2 -2059 1255 1179 2616 118 0 3 chr11 122029103 122029467 -28754086 + THE1B LTR MaLR 1 363 -1 189 324 59 37 chr11 122029469 122029605 -28753948 + L2 LINE L2 2316 2454 -860 2918 161 48 38 chr11 122029817 122030425 -28753128 + L1MB4 LINE L1 5525 6138 -42 207 311 129 14 chr11 122030443 122030652 -28752901 + L2 LINE L2 2635 2867 -447 554 282 168 15 chr11 122031113 122031315 -28752238 - MIR SINE MIR -7 255 23 540 273 106 15 chr11 122031401 122031599 -28751954 - MIR SINE MIR -35 227 12 233 280 43 32 chr11 122032153 122032246 -28751307 - MIR SINE MIR -133 129 36 21 82 0 0 chr11 122032548 122032597 -28750956 + AT_rich Low_complexity Low_complexity 1 49 0 372 260 70 0 chr11 122032694 122032794 -28750759 - MIR SINE MIR -98 164 58 263 169 0 13 chr11 122032824 122032901 -28750652 + (TA)n Simple_repeat Simple_repeat 1 76 0 6034 102 13 5 chr11 122032969 122034500 -28749053 - L1PA13 LINE L1 0 6163 4631 1239 182 4 4 chr11 122034640 122034871 -28748682 - L1MC1 LINE L1 0 6333 6103 7669 187 53 38 chr11 122034879 122035851 -28747702 - L1MCa LINE L1 -2961 3465 2509 6616 53 10 3 chr11 122035851 122036480 -28747073 - L1PA7 LINE L1 0 6154 5531 2105 94 0 4 chr11 122036480 122036755 -28746798 + AluSc SINE Alu 1 274 -35 6616 53 10 3 chr11 122036755 122037556 -28745997 - L1PA7 LINE L1 -623 5531 4689 7669 187 53 38 chr11 122037556 122039897 -28743656 - L1MCa LINE L1 -3917 2509 20 256 410 16 0 chr11 122040207 122040329 -28743224 - L2 LINE L2 0 3313 3190 207 0 0 0 chr11 122040887 122040910 -28742643 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 434 237 23 133 chr11 122040970 122041009 -28742544 - MER5B DNA MER1_type -24 154 112 2149 126 0 0 chr11 122041009 122041310 -28742243 + AluSx SINE Alu 1 301 -11 434 237 23 133 chr11 122041310 122041443 -28742110 - MER5B DNA MER1_type -66 112 1 382 223 0 131 chr11 122042254 122042384 -28741169 + L2 LINE L2 3200 3312 -1 1365 230 155 50 chr11 122042395 122043036 -28740517 + HAL1b LINE L1 413 985 -363 2158 105 34 0 chr11 122043036 122043330 -28740223 - AluSg SINE Alu -6 304 1 1365 230 155 50 chr11 122043330 122043352 -28740201 + HAL1b LINE L1 985 1003 -345 192 77 0 0 chr11 122043352 122043378 -28740175 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 1365 230 155 50 chr11 122043378 122043560 -28739993 + HAL1b LINE L1 1003 1348 0 595 294 108 5 chr11 122043927 122044131 -28739422 - MIR SINE MIR -12 250 26 299 256 232 0 chr11 122044119 122044244 -28739309 - MIR SINE MIR -46 216 63 * 21 0 0 0 chr11 122044330 122044351 -28739202 + AT_rich Low_complexity Low_complexity 1 21 0 309 272 3 58 chr11 122045944 122046066 -28737487 + MIR SINE MIR 44 156 -52 201 116 70 0 chr11 122046257 122046300 -28737253 + GA-rich Low_complexity Low_complexity 2 47 0 459 200 30 24 chr11 122047283 122047448 -28736105 + GA-rich Low_complexity Low_complexity 3 168 0 228 346 125 17 chr11 122048326 122048621 -28734932 + L2 LINE L2 2328 2654 -660 1163 278 38 26 chr11 122048665 122049108 -28734445 - LTR16A LTR ERVL -1 451 3 270 258 18 68 chr11 122049274 122049437 -28734116 - ERVL LTR ERVL -205 5280 5126 785 261 153 46 chr11 122049557 122050135 -28733418 - ERVL LTR ERVL -1066 4419 3808 2408 298 60 6 chr11 122050215 122051532 -28732021 - ERVL LTR ERVL -1922 3074 2004 749 264 16 11 chr11 122051670 122051852 -28731701 + MER5A DNA MER1_type 2 184 -5 1256 315 34 30 chr11 122051858 122052178 -28731375 - ERVL LTR ERVL -3465 1531 1207 2136 136 45 14 chr11 122052178 122052531 -28731022 + THE1B LTR MaLR 1 364 0 1256 315 34 30 chr11 122052531 122052708 -28730845 - ERVL LTR ERVL -3789 1207 1032 370 222 0 71 chr11 122052705 122052804 -28730749 - ERVL LTR ERVL -4449 547 456 * 414 286 47 18 chr11 122052922 122053093 -28730460 - ERVL LTR ERVL -4715 281 106 948 237 72 10 chr11 122053097 122053388 -28730165 - L1ME LINE L1 -493 5673 5365 831 209 119 84 chr11 122053389 122053733 -28729820 - MLT2B1 LTR ERVL 0 520 165 213 301 36 0 chr11 122054094 122054177 -28729376 + L2 LINE L2 1264 1349 -1965 181 309 15 15 chr11 122055207 122055275 -28728278 - L3 LINE CR1 -564 1013 946 261 311 187 55 chr11 122055284 122055546 -28728007 - L2 LINE L2 -36 3236 2935 512 272 121 25 chr11 122055546 122055785 -28727768 - MIR SINE MIR 0 262 1 238 301 36 0 chr11 122055834 122055917 -28727636 - L3 LINE CR1 -688 889 804 1075 168 5 28 chr11 122056068 122056282 -28727271 - L1MB3 LINE L1 -2 6181 5973 285 29 0 0 chr11 122056524 122056558 -28726995 + (TG)n Simple_repeat Simple_repeat 2 35 0 238 310 35 53 chr11 122056775 122056888 -28726665 + L2 LINE L2 3203 3313 0 5719 57 1 26 chr11 122057016 122057777 -28725776 - L1PA8 LINE L1 -2 6170 5429 514 296 33 13 chr11 122057945 122058097 -28725456 - L3 LINE CR1 -892 685 531 3036 226 24 11 chr11 122058263 122058896 -28724657 + MER82 DNA MER2_type 3 643 -10 240 35 0 0 chr11 122058958 122058987 -28724566 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2428 132 3 3 chr11 122059183 122059570 -28723983 - L1PA13 LINE L1 -7 6156 5770 14702 192 32 11 chr11 122059573 122059627 -28723926 - L1PB2 LINE L1 -6 6861 6810 2302 91 0 36 chr11 122059627 122059935 -28723618 - AluSq SINE Alu -16 297 1 14702 192 32 11 chr11 122059935 122064807 -28718746 - L1PB2 LINE L1 -57 6810 1817 3441 107 20 8 chr11 122064806 122065403 -28718150 - L1P4 LINE L1 -375 5786 5185 * 1974 153 0 3 chr11 122065462 122065756 -28717797 + AluSx SINE Alu 3 295 -17 27 29 0 0 chr11 122065859 122065893 -28717660 + AT_rich Low_complexity Low_complexity 1 34 0 468 325 47 19 chr11 122066036 122066549 -28717004 + L1M4 LINE L1 3405 3931 -2215 358 223 36 18 chr11 122067408 122067520 -28716033 - Charlie8 DNA MER1_type -2262 155 42 413 310 56 28 chr11 122067549 122067691 -28715862 + L2 LINE L2 3121 3266 -6 200 304 89 0 chr11 122067766 122067822 -28715731 - L3 LINE CR1 -1271 306 246 384 283 117 25 chr11 122068313 122068433 -28715120 - L2 LINE L2 0 3272 3142 1354 284 121 58 chr11 122068463 122069165 -28714388 + L3 LINE CR1 266 1011 -566 239 366 99 0 chr11 122069218 122069349 -28714204 + L2 LINE L2 3168 3311 -2 352 189 132 19 chr11 122069356 122069462 -28714091 - MIR SINE MIR -26 236 119 373 291 10 10 chr11 122069580 122069683 -28713870 - MIR SINE MIR -157 105 3 187 197 0 33 chr11 122069758 122069819 -28713734 + CT-rich Low_complexity Low_complexity 3 61 0 200 356 32 46 chr11 122070010 122070226 -28713327 + L2 LINE L2 3093 3305 -8 188 35 35 0 chr11 122070356 122070385 -28713168 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 821 276 39 31 chr11 122070761 122071015 -28712538 + MIR SINE MIR 6 261 -1 240 211 0 0 chr11 122072091 122072143 -28711410 + (CAATT)n Simple_repeat Simple_repeat 2 53 0 210 338 81 0 chr11 122072229 122072303 -28711250 - L2 LINE L2 -94 3178 3099 240 357 115 6 chr11 122072376 122072533 -28711020 - MIR SINE MIR -49 213 40 240 130 0 0 chr11 122074915 122074961 -28708592 + (TC)n Simple_repeat Simple_repeat 1 46 0 1937 128 90 35 chr11 122075292 122075637 -28707916 - THE1B LTR MaLR 0 364 1 225 361 0 0 chr11 122076169 122076252 -28707301 + L2 LINE L2 1127 1209 -2105 562 293 55 55 chr11 122076337 122076794 -28706759 - L1ME4a LINE L1 -72 6049 5593 181 364 13 0 chr11 122077096 122077173 -28706380 - L2 LINE L2 -333 2939 2862 338 290 30 38 chr11 122077215 122077346 -28706207 - MIR SINE MIR -32 230 101 240 294 12 12 chr11 122077432 122077517 -28706036 - L2 LINE L2 -459 2855 2771 342 295 90 0 chr11 122077618 122077740 -28705813 + L2 LINE L2 3139 3271 -1 3687 82 2 0 chr11 122077755 122078245 -28705308 - L1PA7 LINE L1 0 6154 5664 1121 201 122 7 chr11 122078270 122078573 -28704980 - MER63 DNA MER1_type 0 1061 724 293 364 108 42 chr11 122078580 122079042 -28704511 + L2 LINE L2 1986 2483 -831 1613 211 82 26 chr11 122079216 122079632 -28703921 + MLT1D LTR MaLR 60 498 -7 1786 220 102 36 chr11 122079756 122080288 -28703265 - MLT1F1 LTR MaLR 0 567 1 259 353 8 34 chr11 122080392 122080511 -28703042 - MIR SINE MIR -56 206 91 6664 131 28 16 chr11 122080703 122081909 -28701644 + L1PA10 LINE L1 4269 5501 -667 2259 108 3 0 chr11 122081909 122082204 -28701349 + AluSp SINE Alu 5 300 -13 6664 131 28 16 chr11 122082204 122082881 -28700672 + L1PA10 LINE L1 5501 6168 0 2251 93 0 0 chr11 122082891 122083200 -28700353 + AluSc SINE Alu 1 309 0 2276 284 57 34 chr11 122083256 122084374 -28699179 + L2 LINE L2 2057 3203 -110 207 306 0 112 chr11 122086544 122086625 -28696928 + MIR3 SINE MIR 13 75 -133 1722 157 39 0 chr11 122086625 122086911 -28696642 - AluSx SINE Alu -15 297 1 207 306 0 112 chr11 122086911 122086963 -28696590 + MIR3 SINE MIR 75 131 -77 189 0 0 0 chr11 122087192 122087213 -28696340 + (T)n Simple_repeat Simple_repeat 1 21 0 877 266 7 45 chr11 122087233 122087541 -28696012 - LTR16C LTR ERVL -55 436 141 3264 80 9 2 chr11 122087677 122088116 -28695437 + L1PA10 LINE L1 5716 6157 -11 202 330 78 10 chr11 122088218 122088321 -28695232 + L2 LINE L2 3149 3258 -14 900 280 138 21 chr11 122089521 122089949 -28693604 - L2 LINE L2 -5 3308 2831 1531 243 65 32 chr11 122089952 122090475 -28693078 + MLT1H1 LTR MaLR 1 540 -15 225 65 0 0 chr11 122090487 122090518 -28693035 + (GA)n Simple_repeat Simple_repeat 2 32 0 403 351 5 38 chr11 122090632 122090817 -28692736 - L1M4 LINE L1 -1920 4226 4048 599 288 57 6 chr11 122091082 122091259 -28692294 + MIR SINE MIR 73 258 -4 23 33 0 0 chr11 122091735 122091765 -28691788 + AT_rich Low_complexity Low_complexity 1 30 0 624 276 100 9 chr11 122092347 122092557 -28690996 + MIR SINE MIR 34 262 0 429 246 45 0 chr11 122093939 122094049 -28689504 + L2 LINE L2 3158 3272 0 28 0 0 0 chr11 122094380 122094408 -28689145 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr11 122094626 122094658 -28688895 + AT_rich Low_complexity Low_complexity 1 32 0 180 77 0 0 chr11 122095163 122095189 -28688364 + (TG)n Simple_repeat Simple_repeat 2 27 0 2431 159 44 0 chr11 122095502 122095910 -28687643 + MSTB LTR MaLR 1 426 0 8849 174 14 20 chr11 122095910 122097572 -28685981 + MSTB-int LTR MaLR 1 1651 0 2367 168 52 0 chr11 122097572 122097977 -28685576 + MSTB LTR MaLR 1 426 0 261 363 107 6 chr11 122098079 122098247 -28685306 + L2 LINE L2 2920 3104 -168 549 268 17 39 chr11 122098549 122098724 -28684829 - MIR SINE MIR -64 144 4 430 299 43 24 chr11 122100666 122100830 -28682723 + MIR3 SINE MIR 34 200 -8 276 353 69 0 chr11 122100909 122101011 -28682542 + MIR SINE MIR 65 173 -89 372 279 17 46 chr11 122101426 122101723 -28681830 - L1MB8 LINE L1 -211 5951 5669 243 150 0 0 chr11 122101890 122101930 -28681623 + MER2 DNA MER2_type 55 94 -251 1340 70 12 0 chr11 122101934 122102106 -28681447 + AluY SINE Alu 125 298 -13 622 75 11 0 chr11 122102108 122102202 -28681351 + MER2 DNA MER2_type 96 190 -155 329 207 134 0 chr11 122102258 122102340 -28681213 + L2 LINE L2 3221 3313 0 418 281 123 25 chr11 122102472 122102675 -28680878 + MIR SINE MIR 40 262 0 219 294 37 46 chr11 122103282 122103391 -28680162 + MIR SINE MIR 104 211 -51 1906 105 15 68 chr11 122103569 122103893 -28679660 - AluSg SINE Alu -3 307 1 1818 159 6 13 chr11 122105179 122105493 -28678060 - AluJb SINE Alu 0 312 1 573 274 63 32 chr11 122105582 122105772 -28677781 + MIR SINE MIR 54 249 -13 406 233 41 98 chr11 122106713 122106979 -28676574 + MER112 DNA MER1_type 5 255 -1 1606 154 75 14 chr11 122107374 122107667 -28675886 + AluJb SINE Alu 2 312 0 590 226 9 0 chr11 122107676 122107782 -28675771 + FLAM_A SINE Alu 1 107 -35 213 39 0 0 chr11 122107790 122107816 -28675737 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 763 93 9 9 chr11 122108125 122108233 -28675320 + AluSc SINE Alu 105 212 -97 422 269 39 60 chr11 122108776 122108958 -28674595 + MIR SINE MIR 14 191 -71 1919 109 8 4 chr11 122108970 122109237 -28674316 + AluSx SINE Alu 1 268 -44 195 100 0 0 chr11 122109246 122109276 -28674277 + (CAA)n Simple_repeat Simple_repeat 1 30 0 979 226 74 35 chr11 122109277 122109507 -28674046 - MIR SINE MIR -6 256 18 226 263 11 95 chr11 122109573 122109668 -28673885 - L2 LINE L2 0 3272 3186 210 292 31 0 chr11 122110116 122110181 -28673372 - L2 LINE L2 0 3313 3247 765 166 153 0 chr11 122110260 122110417 -28673136 - AluSc SINE Alu -1 308 128 657 276 42 8 chr11 122110463 122110702 -28672851 - MER115 DNA AcHobo -8 685 439 1738 111 4 0 chr11 122110877 122111112 -28672441 + AluSq SINE Alu 2 237 -76 189 154 0 0 chr11 122111399 122111438 -28672115 + A-rich Low_complexity Low_complexity 1 39 0 324 328 74 66 chr11 122111796 122112067 -28671486 - L2 LINE L2 -14 3258 2986 271 284 49 0 chr11 122112243 122112345 -28671208 + MIR SINE MIR 119 225 -37 402 274 95 57 chr11 122112394 122112835 -28670718 - MLT1J LTR MaLR -53 458 1 26 0 0 0 chr11 122113049 122113075 -28670478 + AT_rich Low_complexity Low_complexity 1 26 0 493 259 22 14 chr11 122113712 122113851 -28669702 + MIR SINE MIR 108 247 -15 2138 12 12 0 chr11 122114386 122114632 -28668921 - L1PA2 LINE L1 -1 6154 5906 2094 182 22 59 chr11 122114869 122115106 -28668447 + Charlie1b DNA MER1_type 1 245 -2516 2122 104 4 0 chr11 122115106 122115419 -28668134 - AluSc SINE Alu 0 314 1 2094 182 22 59 chr11 122115419 122115723 -28667830 + Charlie1b DNA MER1_type 245 523 0 346 196 72 0 chr11 122115734 122115831 -28667722 + L1ME4a LINE L1 5794 5897 -224 182 385 46 28 chr11 122116407 122116516 -28667037 + L2 LINE L2 3153 3263 -9 289 298 157 10 chr11 122116965 122117163 -28666390 - L2 LINE L2 -679 2635 2409 293 311 107 8 chr11 122117704 122117826 -28665727 + MIR3 SINE MIR 14 147 -61 594 310 59 25 chr11 122117849 122118088 -28665465 - MIR SINE MIR -4 258 12 822 229 93 29 chr11 122119251 122119530 -28664023 - MLT1J1 LTR MaLR -149 297 1 2885 157 35 5 chr11 122119919 122120493 -28663060 - L1MC3 LINE L1 0 7785 7195 375 253 0 0 chr11 122120564 122120655 -28662898 - MLT1F1 LTR MaLR -442 125 35 316 282 0 0 chr11 122120869 122120954 -28662599 - MIR SINE MIR -73 189 105 734 293 58 91 chr11 122120971 122121600 -28661953 + L2 LINE L2 2706 3312 -1 188 236 53 50 chr11 122121587 122121673 -28661880 - MIR SINE MIR -93 115 40 * 388 266 77 42 chr11 122121820 122121963 -28661590 + MIR SINE MIR 70 217 -45 400 179 0 0 chr11 122122063 122122130 -28661423 - AluJb SINE Alu -37 275 209 1534 180 14 74 chr11 122122528 122122732 -28660821 + MLT1B LTR MaLR 4 178 -212 2052 152 5 37 chr11 122122732 122123107 -28660446 - THE1B LTR MaLR -1 363 1 1534 180 14 74 chr11 122123107 122123269 -28660284 + MLT1B LTR MaLR 178 348 -42 226 228 0 35 chr11 122123723 122123780 -28659773 - MIR SINE MIR -131 77 23 26 30 0 0 chr11 122124218 122124251 -28659302 + AT_rich Low_complexity Low_complexity 1 33 0 806 141 0 16 chr11 122124286 122124407 -28659146 - FRAM SINE Alu -20 156 38 4720 186 29 14 chr11 122124437 122126334 -28657219 - L1MB2 LINE L1 -44 6127 4084 310 304 147 0 chr11 122126507 122126609 -28656944 - L2 LINE L2 -7 3265 3149 392 256 16 54 chr11 122126945 122127074 -28656479 - L3 LINE CR1 -137 1440 1317 219 36 0 0 chr11 122127263 122127291 -28656262 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2037 130 5 61 chr11 122127429 122127805 -28655748 + THE1A LTR MaLR 1 355 0 2156 78 0 11 chr11 122128259 122128541 -28655012 - AluY SINE Alu -11 300 22 403 347 27 14 chr11 122128653 122128800 -28654753 - MIR SINE MIR -90 172 24 199 379 48 24 chr11 122128897 122129021 -28654532 - L2 LINE L2 -221 3051 2925 1605 269 95 16 chr11 122129090 122129670 -28653883 + MLT1G LTR MaLR 1 590 0 604 341 78 18 chr11 122129684 122130118 -28653435 - L2 LINE L2 -1016 2298 1839 246 104 62 21 chr11 122130128 122130176 -28653377 + L2 LINE L2 3264 3313 0 1551 162 38 23 chr11 122130990 122131255 -28652298 - AluJo SINE Alu -39 273 5 1369 191 207 23 chr11 122132046 122132485 -28651068 + MLT2B1 LTR ERVL 1 520 0 207 0 0 0 chr11 122134054 122134077 -28649476 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 675 147 0 70 chr11 122134349 122134492 -28649061 + FRAM SINE Alu 1 40 0 466 220 0 0 chr11 122134614 122134705 -28648848 + FRAM SINE Alu 74 164 -12 609 142 23 17 chr11 122135386 122135562 -28647991 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 399 119 0 0 chr11 122135563 122135630 -28647923 + (TATG)n Simple_repeat Simple_repeat 2 68 0 246 170 0 57 chr11 122135955 122136008 -28647545 - MIR SINE MIR -103 159 110 358 259 84 23 chr11 122137320 122137451 -28646102 + L2 LINE L2 2925 3063 -209 534 305 95 36 chr11 122137557 122137999 -28645554 + LTR33 LTR ERVL 21 488 -33 850 213 130 23 chr11 122138319 122138635 -28644918 + MLT1C LTR MaLR 130 467 0 1007 119 62 0 chr11 122141207 122141367 -28642186 + L1PA10 LINE L1 5999 6168 0 379 325 57 0 chr11 122141368 122141491 -28642062 - L2 LINE L2 -6 3266 3137 703 276 92 9 chr11 122141530 122141758 -28641795 + MIR SINE MIR 9 255 -7 350 387 0 7 chr11 122142169 122142311 -28641242 + L2 LINE L2 3127 3267 -5 999 268 30 54 chr11 122143197 122143566 -28639987 - L2 LINE L2 0 3313 2954 1969 168 0 0 chr11 122145371 122145681 -28637872 - AluSx SINE Alu -2 310 1 532 308 16 22 chr11 122145682 122145864 -28637689 - MIR SINE MIR -70 192 12 266 326 12 0 chr11 122146477 122146563 -28636990 - MIR3 SINE MIR -18 190 104 330 339 8 8 chr11 122146567 122146688 -28636865 + MIR SINE MIR 20 140 -122 537 295 139 39 chr11 122146702 122146916 -28636637 + L2 LINE L2 2549 2740 -573 2173 121 52 22 chr11 122146916 122147280 -28636273 + THE1C LTR MaLR 1 375 0 537 295 139 39 chr11 122147280 122147687 -28635866 + L2 LINE L2 2740 3228 -85 1718 84 0 0 chr11 122149115 122149341 -28634212 - L1PA8 LINE L1 -6 6166 5941 2217 128 21 24 chr11 122149989 122150365 -28633188 + THE1C LTR MaLR 1 375 0 279 341 71 92 chr11 122150495 122150832 -28632721 + L2 LINE L2 2923 3252 -20 720 298 107 0 chr11 122150842 122151047 -28632506 + MIR SINE MIR 2 228 -34 318 291 154 0 chr11 122152348 122152465 -28631088 - MIR SINE MIR -96 166 32 1237 270 97 45 chr11 122153448 122153954 -28629599 - L1ME3A LINE L1 -223 5947 5469 3425 78 4 0 chr11 122153954 122154414 -28629139 - L1PA12 LINE L1 0 6168 5707 1237 270 97 45 chr11 122154414 122154555 -28628998 - L1ME3A LINE L1 -701 5469 5337 2318 73 0 7 chr11 122154555 122154868 -28628685 - AluY SINE Alu 0 311 1 1237 270 97 45 chr11 122154868 122155391 -28628162 - L1ME3A LINE L1 -833 5337 4706 992 248 25 0 chr11 122155553 122155795 -28627758 - MLT1I LTR MaLR 0 409 162 1421 248 52 66 chr11 122155928 122156717 -28626836 - L1ME3A LINE L1 -1717 4429 3652 1510 59 0 5 chr11 122157382 122157393 -28626160 + L1P3 LINE L1 5441 5451 -703 3688 78 6 0 chr11 122157393 122157883 -28625670 - L1PA7 LINE L1 -2 6152 5660 1510 59 0 5 chr11 122157883 122158074 -28625479 + L1PA7 LINE L1 5451 5642 -512 16097 108 15 8 chr11 122158156 122160761 -28622792 - L1P LINE L1 -2795 3351 729 499 279 148 22 chr11 122160880 122161109 -28622444 - MIR SINE MIR -3 259 2 25 0 0 0 chr11 122161538 122161563 -28621990 + AT_rich Low_complexity Low_complexity 1 25 0 189 94 0 0 chr11 122162121 122162153 -28621400 + (TG)n Simple_repeat Simple_repeat 1 32 0 659 144 0 0 chr11 122162763 122162860 -28620693 + AluSg/x SINE Alu 194 290 -20 215 294 0 0 chr11 122163036 122163087 -28620466 + MIR SINE MIR 162 212 -50 2358 110 0 0 chr11 122163559 122163869 -28619684 + AluSg SINE Alu 1 310 0 801 260 32 41 chr11 122164878 122165124 -28618429 - MIR SINE MIR -17 245 2 668 119 9 0 chr11 122165631 122165740 -28617813 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 212 299 186 30 chr11 122165747 122165914 -28617639 - L3b LINE CR1 -74 1509 1317 22 111 0 0 chr11 122166833 122166932 -28616621 + AT_rich Low_complexity Low_complexity 1 99 0 313 350 22 15 chr11 122167281 122167418 -28616135 - MIR SINE MIR -120 142 5 624 211 19 6 chr11 122167485 122167641 -28615912 - MER103 DNA DNA -1 165 8 479 253 34 0 chr11 122170399 122170545 -28613008 + MER103 DNA DNA 13 163 -3 973 26 0 0 chr11 122170975 122171091 -28612462 + L1PA5 LINE L1 6038 6153 -1 273 319 148 23 chr11 122172494 122172710 -28610843 - MIR SINE MIR -6 256 14 332 273 134 12 chr11 122172831 122173084 -28610469 - L1MC5 LINE L1 -54 7907 7624 760 261 57 24 chr11 122173091 122173420 -28610133 - LTR33 LTR ERVL -7 514 90 846 231 75 0 chr11 122173420 122173619 -28609934 - MER58C DNA MER1_type 0 215 2 760 261 57 24 chr11 122173619 122173708 -28609845 - LTR33 LTR ERVL -431 90 5 299 270 181 22 chr11 122173732 122173958 -28609595 - L1MC5 LINE L1 -389 7572 7311 * 382 228 71 14 chr11 122173942 122174391 -28609162 - L1MC4 LINE L1 -547 7495 6963 210 208 0 0 chr11 122174426 122174479 -28609074 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 318 291 11 1 chr11 122174501 122174602 -28608951 - L1MD3 LINE L1 -859 6993 6849 900 221 101 49 chr11 122174645 122175011 -28608542 - MLT1D LTR MaLR -120 385 1 595 278 16 0 chr11 122175740 122175931 -28607622 - L1MC5 LINE L1 -1124 6837 6644 1804 162 125 13 chr11 122178062 122178439 -28605114 + LTR32 LTR ERVL 53 471 0 254 346 20 0 chr11 122178529 122178630 -28604923 - MIR SINE MIR -8 254 152 248 202 36 48 chr11 122179021 122179105 -28604448 - LTR67 LTR ERVL -385 172 90 516 348 110 28 chr11 122179705 122180096 -28603457 - L2 LINE L2 -2 3270 2848 25 0 0 0 chr11 122180533 122180558 -28602995 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr11 122180604 122180634 -28602919 + AT_rich Low_complexity Low_complexity 1 30 0 1494 93 5 5 chr11 122180710 122180915 -28602638 - AluSg/x SINE Alu -7 303 99 764 312 127 24 chr11 122181468 122181987 -28601566 - L2 LINE L2 0 3313 2737 182 150 25 0 chr11 122181994 122182034 -28601519 + (TCTA)n Simple_repeat Simple_repeat 3 43 0 240 150 0 0 chr11 122182105 122182145 -28601408 - L1MC/D LINE L1 -1913 5895 5856 237 264 0 0 chr11 122182157 122182210 -28601343 - L2 LINE L2 -567 2747 2695 430 316 8 8 chr11 122182420 122182553 -28601000 + L2 LINE L2 3140 3272 0 647 333 110 10 chr11 122182741 122183032 -28600521 + L3 LINE CR1 1143 1462 -115 532 305 65 10 chr11 122183038 122183238 -28600315 - MIR SINE MIR -37 225 15 1785 115 12 0 chr11 122184190 122184442 -28599111 + AluSx SINE Alu 58 312 0 284 331 87 0 chr11 122184729 122184856 -28598697 - L2 LINE L2 0 3313 3176 * 716 269 29 41 chr11 122184851 122185093 -28598460 - MIR SINE MIR 0 262 24 197 377 78 0 chr11 122185155 122185232 -28598321 - MIR SINE MIR -174 88 6 497 146 0 10 chr11 122185411 122185507 -28598046 + (TCCC)n Simple_repeat Simple_repeat 1 95 0 429 294 55 37 chr11 122188474 122188692 -28594861 + MLT1K LTR MaLR 367 588 0 221 360 86 18 chr11 122188693 122188915 -28594638 + L2 LINE L2 2624 2860 -454 704 271 74 96 chr11 122189018 122189667 -28593886 - L1MEd LINE L1 -5386 733 99 588 249 32 111 chr11 122189836 122190177 -28593376 - L2 LINE L2 0 3313 3000 680 265 151 49 chr11 122190778 122191103 -28592450 - L3 LINE CR1 -252 1325 968 675 353 63 3 chr11 122191226 122191577 -28591976 - L3 LINE CR1 -1015 562 191 322 328 46 40 chr11 122191626 122191750 -28591803 + MIR3 SINE MIR 10 137 -71 1913 161 0 10 chr11 122191750 122192060 -28591493 + AluSx SINE Alu 1 307 -5 322 328 46 40 chr11 122192060 122192109 -28591444 + MIR3 SINE MIR 137 184 -24 584 226 7 0 chr11 122192267 122192404 -28591149 - L1MB7 LINE L1 0 6184 6047 4849 48 9 2 chr11 122192701 122193265 -28590288 + L1PA5 LINE L1 5587 6154 0 248 290 113 43 chr11 122193360 122193546 -28590007 - L2 LINE L2 -12 3301 3103 533 269 38 61 chr11 122193581 122193793 -28589760 - MIR SINE MIR -50 212 6 300 331 132 0 chr11 122193803 122193939 -28589614 + L1ME4a LINE L1 5760 5913 -208 303 93 0 0 chr11 122194166 122194209 -28589344 + (CA)n Simple_repeat Simple_repeat 2 44 0 444 226 47 58 chr11 122194546 122194736 -28588817 - LTR33 LTR ERVL 0 521 334 603 298 11 5 chr11 122194789 122194977 -28588576 - LTR33 LTR ERVL -309 212 24 383 175 0 0 chr11 122195012 122195075 -28588478 - Alu SINE Alu -1 299 237 1609 167 57 3 chr11 122195089 122195258 -28588295 - AluSx SINE Alu -15 297 106 477 0 0 0 chr11 122195258 122195311 -28588242 + (GA)n Simple_repeat Simple_repeat 2 54 0 1609 167 57 3 chr11 122195311 122195423 -28588130 - AluSx SINE Alu -206 106 1 364 216 86 14 chr11 122195624 122195731 -28587822 + MIR SINE MIR 15 137 -71 648 256 66 110 chr11 122195978 122196431 -28587122 - L2 LINE L2 -49 3264 2832 436 294 96 7 chr11 122197090 122197236 -28586317 + MIR SINE MIR 50 208 -54 225 0 0 0 chr11 122198000 122198025 -28585528 + (A)n Simple_repeat Simple_repeat 1 25 0 270 277 170 38 chr11 122198071 122198230 -28585323 + MIR3 SINE MIR 6 185 -23 293 239 11 87 chr11 122198372 122198464 -28585089 + MIR SINE MIR 104 188 -74 3018 184 32 52 chr11 122198840 122199554 -28583999 + L1 LINE L1 4535 5234 -912 302 234 0 137 chr11 122199801 122199878 -28583675 + ERVL LTR ERVL 1339 1394 -4370 2185 71 30 20 chr11 122199878 122200173 -28583380 - AluY SINE Alu -13 298 1 302 234 0 137 chr11 122200173 122200219 -28583334 + ERVL LTR ERVL 1394 1445 -4319 578 269 89 106 chr11 122200758 122201118 -28582435 + MLT1J2 LTR MaLR 97 450 0 209 371 170 0 chr11 122201124 122201283 -28582270 - L2 LINE L2 -2417 897 712 207 47 23 47 chr11 122201290 122201333 -28582220 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 405 83 61 42 chr11 122201336 122201559 -28581994 + (TATATG)n Simple_repeat Simple_repeat 1 227 0 1008 98 35 0 chr11 122201570 122201744 -28581809 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 226 200 0 46 chr11 122201746 122201811 -28581742 + L1MCa LINE L1 2006 2067 -4359 * 278 311 0 0 chr11 122201777 122201867 -28581686 - L1MC4 LINE L1 -1339 6703 6614 247 240 0 62 chr11 122201799 122201895 -28581658 + L1MC4 LINE L1 6614 6703 -1339 * 205 154 36 36 chr11 122201909 122202019 -28581534 + (TATATG)n Simple_repeat Simple_repeat 4 113 0 517 326 103 13 chr11 122202108 122202332 -28581221 - MIR SINE MIR -6 256 13 21 89 0 0 chr11 122203160 122203216 -28580337 + AT_rich Low_complexity Low_complexity 1 56 0 544 287 115 4 chr11 122203221 122203465 -28580088 + L1ME3A LINE L1 5622 5892 -278 390 42 0 0 chr11 122203467 122203515 -28580038 + (TA)n Simple_repeat Simple_repeat 1 48 0 234 319 176 8 chr11 122205510 122205629 -28577924 + L2 LINE L2 3101 3239 -33 247 291 0 13 chr11 122206038 122206117 -28577436 + L3 LINE CR1 1495 1572 -5 2112 139 26 42 chr11 122206879 122207260 -28576293 - THE1C LTR MaLR 0 375 1 466 312 111 43 chr11 122207489 122207887 -28575666 + L2 LINE L2 1758 2182 -1132 375 264 83 16 chr11 122207888 122208009 -28575544 - MER5B DNA MER1_type 0 178 50 337 132 105 0 chr11 122208062 122208138 -28575415 - L1MA8 LINE L1 -3 6288 6205 318 217 0 0 chr11 122208140 122208200 -28575353 - MER5B DNA MER1_type -116 62 3 * 381 325 0 6 chr11 122208200 122208359 -28575194 + L2 LINE L2 2175 2332 -982 361 295 46 51 chr11 122208355 122208592 -28574961 + L2 LINE L2 2826 3061 -211 * 342 252 104 7 chr11 122208725 122208860 -28574693 - MER104 DNA Tc2 0 180 33 411 73 0 0 chr11 122209190 122209245 -28574308 + (TG)n Simple_repeat Simple_repeat 2 56 0 6435 127 29 37 chr11 122209252 122210423 -28573130 - L1MC1 LINE L1 0 6333 5174 383 214 0 34 chr11 122211967 122212056 -28571497 - MLT1I LTR MaLR -2 407 322 227 264 141 33 chr11 122212171 122212292 -28571261 - MLT1I LTR MaLR -260 149 16 228 302 0 0 chr11 122212311 122212389 -28571164 - MIR SINE MIR -68 140 63 292 311 176 9 chr11 122212750 122212972 -28570581 - MIR SINE MIR -2 260 2 2190 189 46 30 chr11 122213199 122213634 -28569919 - MLT1C LTR MaLR -25 442 1 361 345 34 23 chr11 122214620 122214797 -28568756 + MIR3 SINE MIR 30 208 0 251 271 0 0 chr11 122215690 122215749 -28567804 + MIR SINE MIR 57 115 -147 27 0 0 0 chr11 122217959 122217986 -28565567 + AT_rich Low_complexity Low_complexity 1 27 0 222 330 58 68 chr11 122218252 122218355 -28565198 + L2 LINE L2 3143 3244 -28 405 0 0 0 chr11 122220947 122220992 -28562561 + (TG)n Simple_repeat Simple_repeat 2 46 0 216 337 93 0 chr11 122221850 122221936 -28561617 - MIR SINE MIR -108 154 61 221 175 0 0 chr11 122221958 122221998 -28561555 + T-rich Low_complexity Low_complexity 1 40 0 578 279 14 141 chr11 122222101 122222521 -28561032 - L2 LINE L2 -25 3247 2881 812 238 76 14 chr11 122223442 122223678 -28559875 - MIR SINE MIR -12 250 3 1564 103 123 4 chr11 122223977 122224230 -28559323 - L1MA4 LINE L1 -4 6296 6014 485 308 70 49 chr11 122225085 122225712 -28557841 - L1M4 LINE L1 -1219 4927 4288 3794 205 26 9 chr11 122225786 122226566 -28556987 + L1PB4 LINE L1 5361 6153 -3 2933 138 29 61 chr11 122226572 122226766 -28556787 + L1MA9 LINE L1 5771 5970 -342 2434 78 0 3 chr11 122226766 122227060 -28556493 + AluSc SINE Alu 1 293 -16 2933 138 29 61 chr11 122227060 122227174 -28556379 + L1MA9 LINE L1 5970 6086 -226 1845 145 0 24 chr11 122227174 122227490 -28556063 + AluSx SINE Alu 1 309 0 2933 138 29 61 chr11 122227490 122227739 -28555814 + L1MA9 LINE L1 6086 6312 0 182 131 16 49 chr11 122229088 122229149 -28554404 + GA-rich Low_complexity Low_complexity 1 59 0 435 306 49 27 chr11 122229310 122229493 -28554060 + MIR SINE MIR 49 235 -27 294 257 67 29 chr11 122230682 122230787 -28552766 + MER89 LTR ERV1 422 530 -29 417 281 101 0 chr11 122233079 122233218 -28550335 + L1ME LINE L1 5485 5637 -484 856 281 75 30 chr11 122233274 122233744 -28549809 + L1ME4a LINE L1 5392 5882 -239 253 250 100 0 chr11 122233811 122233891 -28549662 - L2 LINE L2 0 3313 3226 741 273 24 32 chr11 122234150 122234399 -28549154 + MIR SINE MIR 11 257 -5 275 237 153 17 chr11 122234404 122234581 -28548972 + L1ME LINE L1 5687 5887 -234 270 145 66 0 chr11 122234581 122234657 -28548896 + (TA)n Simple_repeat Simple_repeat 2 82 0 294 287 280 0 chr11 122235096 122235239 -28548314 + MER5A DNA MER1_type 4 186 -3 306 336 0 25 chr11 122235267 122235386 -28548167 - MIR SINE MIR -73 135 20 2438 64 0 13 chr11 122236596 122236894 -28546659 + AluY SINE Alu 2 295 -16 3382 75 9 7 chr11 122237002 122237445 -28546108 + MLT2A1 LTR ERVL 1 444 0 305 341 48 0 chr11 122237605 122237813 -28545740 - L1MC4a LINE L1 -1878 5930 5713 291 130 0 0 chr11 122238389 122238443 -28545110 + (GA)n Simple_repeat Simple_repeat 1 54 0 378 211 283 22 chr11 122238992 122239172 -28544381 + MIR SINE MIR 20 246 -16 2073 91 8 0 chr11 122239829 122240094 -28543459 + AluSx SINE Alu 17 283 -29 465 50 0 0 chr11 122240094 122240154 -28543399 + (TA)n Simple_repeat Simple_repeat 2 61 0 206 264 136 57 chr11 122240411 122240551 -28543002 - L2 LINE L2 0 3272 3122 569 50 25 0 chr11 122240698 122240778 -28542775 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 180 0 0 0 chr11 122240842 122240862 -28542691 + (CA)n Simple_repeat Simple_repeat 2 21 0 333 100 0 0 chr11 122241320 122241370 -28542183 + (CA)n Simple_repeat Simple_repeat 1 50 0 969 94 0 0 chr11 122241827 122241965 -28541588 + (CATAG)n Simple_repeat Simple_repeat 4 141 0 401 268 92 28 chr11 122241985 122242127 -28541426 + MIR SINE MIR 40 190 -72 993 224 40 61 chr11 122242234 122242610 -28540943 + LTR16A LTR ERVL 18 436 -14 1547 272 111 84 chr11 122242616 122243658 -28539895 - L1MC4 LINE L1 -17 8025 6942 435 38 0 0 chr11 122243658 122243711 -28539842 + (TG)n Simple_repeat Simple_repeat 2 54 0 1547 272 111 84 chr11 122243711 122243909 -28539644 - L1MC4 LINE L1 -1100 6942 6751 1722 134 0 37 chr11 122244803 122245071 -28538482 + AluJb SINE Alu 33 290 -22 478 273 37 64 chr11 122245215 122245402 -28538151 + MIR3 SINE MIR 17 198 -10 2704 186 18 35 chr11 122245567 122246115 -28537438 - MER90 LTR ERV1 0 614 76 222 346 44 0 chr11 122246694 122246857 -28536696 - MIR SINE MIR -69 139 19 180 343 15 0 chr11 122246918 122246985 -28536568 - MIR SINE MIR -161 101 34 250 257 0 0 chr11 122249265 122249335 -28534218 + MER4-int LTR ERV1 1093 1162 -5436 475 272 0 0 chr11 122251003 122251117 -28532436 - MER103 DNA DNA -45 121 8 2104 139 30 0 chr11 122251758 122252061 -28531492 - AluSx SINE Alu 0 312 1 296 157 48 36 chr11 122252302 122252385 -28531168 - MIR SINE MIR -10 252 169 1400 203 25 15 chr11 122252442 122252640 -28530913 - L1MD2 LINE L1 -5 6354 6150 2822 137 5 16 chr11 122252640 122253079 -28530474 - Tigger2a DNA MER2_type 0 434 1 1400 203 25 15 chr11 122253079 122253206 -28530347 - L1MD2 LINE L1 -209 6150 6026 189 107 0 0 chr11 122254380 122254408 -28529145 + (TAA)n Simple_repeat Simple_repeat 2 29 0 480 316 0 0 chr11 122254629 122254762 -28528791 + MER94 DNA DNA 1 133 -1 305 295 19 19 chr11 122254763 122254868 -28528685 - MIR SINE MIR -127 135 31 199 114 45 0 chr11 122255200 122255244 -28528309 + (TTCA)n Simple_repeat Simple_repeat 4 49 0 3121 96 11 45 chr11 122255334 122255803 -28527750 - MLT2A2 LTR ERVL 0 453 1 547 290 93 84 chr11 122255884 122256239 -28527314 + L2 LINE L2 2914 3271 -1 189 261 22 0 chr11 122256415 122256461 -28527092 + L2 LINE L2 3224 3270 -2 * 445 285 47 14 chr11 122256458 122256631 -28526922 - MIR SINE MIR -58 150 11 388 263 158 0 chr11 122257444 122257577 -28525976 - MIR SINE MIR -12 250 97 291 250 101 85 chr11 122257617 122257865 -28525688 + L2 LINE L2 3060 3311 -2 323 354 47 5 chr11 122259497 122259689 -28523864 + L2 LINE L2 2079 2278 -1036 2351 107 48 25 chr11 122259731 122260087 -28523466 - THE1B LTR MaLR 0 364 1 345 100 0 0 chr11 122260157 122260207 -28523346 + (TTCC)n Simple_repeat Simple_repeat 4 53 0 362 352 53 13 chr11 122260570 122260797 -28522756 - MIR SINE MIR 0 262 27 309 373 16 33 chr11 122260803 122261047 -28522506 - L2 LINE L2 -457 2857 2618 2126 139 0 0 chr11 122261049 122261352 -28522201 + AluSx SINE Alu 1 303 -9 369 277 67 0 chr11 122261516 122261635 -28521918 - L2 LINE L2 -4 3268 3142 191 306 0 14 chr11 122262594 122262666 -28520887 + L2 LINE L2 3201 3271 -1 22 56 0 0 chr11 122265384 122265420 -28518133 + AT_rich Low_complexity Low_complexity 1 36 0 278 323 48 48 chr11 122265622 122265808 -28517745 - L2 LINE L2 -605 2709 2524 2572 124 61 19 chr11 122265824 122266235 -28517318 - MSTA LTR MaLR 0 428 1 5376 159 15 17 chr11 122316888 122317347 -28466206 + L1MA6 LINE L1 4245 4704 -1596 1644 61 0 14 chr11 122317347 122317561 -28465992 - AluY SINE Alu -43 268 58 5376 159 15 17 chr11 122317561 122318739 -28464814 + L1MA6 LINE L1 4704 5875 -425 787 173 14 56 chr11 122318841 122319055 -28464498 + L1MA6 LINE L1 6096 6300 0 525 266 56 42 chr11 122319347 122319704 -28463849 + L1M4 LINE L1 2131 2492 -3654 304 168 59 59 chr11 122320790 122320891 -28462662 - LTR67 LTR ERVL 0 557 457 2292 113 6 0 chr11 122321304 122321615 -28461938 + AluSq SINE Alu 1 313 0 508 158 0 0 chr11 122324452 122324534 -28459019 + AluJ/FLAM SINE Alu 3 84 -228 434 374 57 9 chr11 122324862 122325073 -28458480 - MIR SINE MIR -16 246 26 195 174 14 43 chr11 122325644 122325713 -28457840 + GA-rich Low_complexity Low_complexity 3 69 0 209 295 0 51 chr11 122325722 122325800 -28457753 + MIR3 SINE MIR 103 176 -32 777 324 120 29 chr11 122327345 122327969 -28455584 + L2 LINE L2 2212 2892 -422 1633 152 119 0 chr11 122328175 122328452 -28455101 - AluSx SINE Alu -2 310 1 359 237 158 14 chr11 122328591 122328730 -28454823 + L2 LINE L2 3148 3306 -7 1805 178 0 0 chr11 122328764 122329040 -28454513 + AluJo SINE Alu 1 276 -36 405 58 0 0 chr11 122329050 122329102 -28454451 + (TAA)n Simple_repeat Simple_repeat 3 54 0 223 358 48 35 chr11 122329681 122329910 -28453643 + L2 LINE L2 2682 2913 -401 2110 122 0 7 chr11 122331381 122331675 -28451878 + AluSc SINE Alu 5 296 -13 274 281 140 55 chr11 122332444 122332753 -28450800 + L2 LINE L2 2701 3051 -221 446 317 58 24 chr11 122332810 122333015 -28450538 + MIR SINE MIR 18 229 -33 2804 190 72 16 chr11 122333495 122333729 -28449824 - Charlie1 DNA MER1_type 0 2761 2542 234 0 0 0 chr11 122333729 122333755 -28449798 + (TG)n Simple_repeat Simple_repeat 1 26 0 2804 190 72 16 chr11 122333755 122334649 -28448904 - Charlie1 DNA MER1_type -219 2542 1511 197 241 139 13 chr11 122335755 122335834 -28447719 + MIR SINE MIR 35 123 -139 306 0 0 0 chr11 122336168 122336202 -28447351 + (CA)n Simple_repeat Simple_repeat 2 35 0 345 288 129 18 chr11 122336312 122336475 -28447078 + MIR SINE MIR 47 227 -35 473 221 63 0 chr11 122336506 122336633 -28446920 + L1MD1 LINE L1 2 136 -6404 * 3717 217 49 26 chr11 122336623 122337734 -28445819 + L1MD1 LINE L1 426 1870 -4670 1332 181 83 33 chr11 122337728 122338225 -28445328 + L1MD1 LINE L1 5336 5849 -743 * 324 0 0 0 chr11 122338295 122338331 -28445222 + (TA)n Simple_repeat Simple_repeat 2 37 0 189 0 0 0 chr11 122338345 122338366 -28445187 + (TG)n Simple_repeat Simple_repeat 2 22 0 281 81 16 48 chr11 122338374 122338436 -28445117 - LTR66 LTR ERVL -171 439 380 2733 175 15 8 chr11 122338437 122338962 -28444591 + L1MD1 LINE L1 5902 6430 -206 673 204 74 0 chr11 122339275 122339451 -28444102 + L1ME4a LINE L1 5209 5397 -749 244 269 64 0 chr11 122339655 122339733 -28443820 + MIR SINE MIR 72 154 -108 1788 186 13 5 chr11 122339870 122340242 -28443311 - L1MD3 LINE L1 -5 7990 7616 421 231 61 7 chr11 122340346 122340493 -28443060 - L1MA9 LINE L1 -119 6193 6039 2263 132 0 0 chr11 122340530 122340841 -28442712 - AluSx SINE Alu -1 311 1 1227 273 18 3 chr11 122341593 122341923 -28441630 + MER102b DNA MER1_type 2 336 -5 1214 296 34 0 chr11 122342031 122342410 -28441143 - LTR16C LTR ERVL -1 490 99 198 0 0 0 chr11 122343445 122343467 -28440086 + (T)n Simple_repeat Simple_repeat 1 22 0 650 218 0 76 chr11 122343814 122344011 -28439542 - Tigger2a DNA MER2_type 0 434 253 407 131 60 12 chr11 122344038 122344122 -28439431 - Tigger2a DNA MER2_type -345 89 2 190 238 95 24 chr11 122344198 122344282 -28439271 - MER5A DNA MER1_type -18 171 82 323 267 50 46 chr11 122344837 122345004 -28438549 - MIR SINE MIR -67 141 10 182 283 19 19 chr11 122345284 122345337 -28438216 - L2 LINE L2 -5 3267 3215 432 0 0 0 chr11 122345610 122345658 -28437895 + (TG)n Simple_repeat Simple_repeat 1 48 0 248 265 29 15 chr11 122346373 122346441 -28437112 + MIR SINE MIR 44 112 -96 * 2439 279 154 16 chr11 122346437 122347396 -28436157 + L2 LINE L2 835 1926 -1388 256 305 62 23 chr11 122347431 122347559 -28435994 + MIR SINE MIR 106 238 -24 844 264 42 37 chr11 122348086 122348491 -28435062 + L1ME4a LINE L1 5525 5931 -190 333 250 65 0 chr11 122348537 122348629 -28434924 + L1ME4a LINE L1 6017 6114 -7 213 298 164 18 chr11 122348797 122348968 -28434585 - L2 LINE L2 -2 3311 3116 519 233 39 23 chr11 122349191 122349320 -28434233 + MIR3 SINE MIR 36 166 -42 319 339 199 13 chr11 122349674 122350228 -28433325 - L2 LINE L2 -624 2690 2034 300 297 50 0 chr11 122351459 122351560 -28431993 + L2 LINE L2 2926 3031 -282 234 125 0 0 chr11 122352600 122352632 -28430921 + L2 LINE L2 3265 3296 -17 1964 130 11 14 chr11 122352643 122352960 -28430593 + AluSx SINE Alu 1 316 0 418 319 111 10 chr11 122353424 122353631 -28429922 + MIR SINE MIR 15 242 -20 234 91 0 0 chr11 122353807 122353840 -28429713 + (TG)n Simple_repeat Simple_repeat 1 33 0 596 326 30 8 chr11 122354242 122354486 -28429067 - MIR SINE MIR 0 262 17 210 37 0 0 chr11 122354659 122354686 -28428867 + (CA)n Simple_repeat Simple_repeat 1 27 0 253 261 0 78 chr11 122355830 122355983 -28427570 + HAL1b LINE L1 217 357 -991 236 282 24 0 chr11 122356092 122356177 -28427376 + HAL1b LINE L1 526 612 -736 257 298 58 37 chr11 122356270 122356699 -28426854 + L1MC4a LINE L1 4403 4840 -1306 405 277 105 35 chr11 122357105 122357390 -28426163 + L1MC4a LINE L1 5298 5602 -2206 286 288 58 0 chr11 122357407 122357586 -28425967 + L1MC4a LINE L1 5703 5819 -302 210 128 0 0 chr11 122358544 122358583 -28424970 + (A)n Simple_repeat Simple_repeat 1 39 0 1053 221 63 0 chr11 122359028 122359250 -28424303 + MIR SINE MIR 6 241 -21 2157 124 3 13 chr11 122359293 122359600 -28423953 - AluSx SINE Alu -8 304 1 234 321 9 9 chr11 122359700 122359806 -28423747 + MER103 DNA DNA 7 112 -54 334 338 31 19 chr11 122360441 122360631 -28422922 - MIR SINE MIR -50 212 20 365 319 42 0 chr11 122361304 122361423 -28422130 + MIR SINE MIR 5 128 -134 328 265 69 0 chr11 122362537 122362639 -28420914 - MIR SINE MIR -13 249 141 408 280 96 59 chr11 122363148 122363502 -28420051 - MARNA DNA Mariner -42 544 178 2147 110 13 3 chr11 122363744 122364043 -28419510 + AluSx SINE Alu 1 302 -10 305 295 15 99 chr11 122364355 122364560 -28418993 - MIR SINE MIR -41 221 36 240 163 0 0 chr11 122365239 122365282 -28418271 + GA-rich Low_complexity Low_complexity 1 43 0 194 289 0 0 chr11 122365824 122365876 -28417677 - L2 LINE L2 -3 3310 3259 1450 214 79 27 chr11 122366147 122366590 -28416963 + MER31B LTR ERV1 1 466 0 382 241 62 45 chr11 122366626 122366738 -28416815 - MER91B DNA MER1_type 0 190 77 257 303 45 0 chr11 122366748 122366837 -28416716 - MER91B DNA MER1_type -62 128 36 378 256 134 61 chr11 122366980 122367144 -28416409 - L2 LINE L2 0 3313 3138 13190 204 26 18 chr11 122367150 122369171 -28414382 + L1PB3 LINE L1 106 2109 -4102 2149 17 0 0 chr11 122369171 122369406 -28414147 + AluYb8 SINE Alu 71 305 -13 13190 204 26 18 chr11 122369406 122371216 -28412337 + L1PB3 LINE L1 2109 3903 -2308 4366 109 6 16 chr11 122371216 122371859 -28411694 + L1PA13 LINE L1 5471 6111 -52 2147 145 21 16 chr11 122371859 122372232 -28411321 + THE1C LTR MaLR 1 375 0 4366 109 6 16 chr11 122372232 122372266 -28411287 + L1PA13 LINE L1 6111 6144 -19 186 43 0 0 chr11 122372271 122372294 -28411259 + (TAA)n Simple_repeat Simple_repeat 2 24 0 13190 204 26 18 chr11 122372294 122374450 -28409103 + L1PB3 LINE L1 3906 6210 -1 677 295 135 25 chr11 122374468 122374912 -28408641 - L2 LINE L2 -188 3125 2627 1287 224 3 0 chr11 122374960 122375268 -28408285 + L1 LINE L1 4720 5028 -1118 996 162 9 72 chr11 122375268 122375484 -28408069 + L1MB1 LINE L1 5960 6167 -1 277 217 29 72 chr11 122376032 122376101 -28407452 + L2 LINE L2 3134 3199 -73 371 193 11 0 chr11 122376247 122376335 -28407218 + L1ME3A LINE L1 6037 6125 -45 2674 101 5 13 chr11 122376628 122377006 -28406547 - THE1C LTR MaLR 0 375 1 1752 189 55 6 chr11 122377049 122377414 -28406139 + MSTA LTR MaLR 1 383 -45 1167 209 4 4 chr11 122377430 122377698 -28405855 - L1 LINE L1 -1117 5029 4762 1096 299 41 14 chr11 122377701 122378225 -28405328 - ERVL LTR ERVL -919 4608 4017 268 302 28 9 chr11 122378390 122378496 -28405057 - ERVL LTR ERVL -1456 3540 3433 348 104 0 0 chr11 122378645 122378693 -28404860 - MSTB LTR MaLR 0 426 379 499 332 70 52 chr11 122378719 122379391 -28404162 + ERVL LTR ERVL 4615 5298 -466 332 317 89 40 chr11 122379755 122380058 -28403495 + LTR16C LTR ERVL 156 473 -18 673 67 0 0 chr11 122380600 122380689 -28402864 - 5S rRNA rRNA -32 89 1 400 285 105 25 chr11 122380695 122380895 -28402658 + MLT1K LTR MaLR 370 585 -3 206 267 33 0 chr11 122381021 122381081 -28402472 + (CATA)n Simple_repeat Simple_repeat 2 63 0 217 323 15 0 chr11 122381351 122381416 -28402137 + L2 LINE L2 3207 3272 0 292 74 0 37 chr11 122381453 122381507 -28402046 + (TA)n Simple_repeat Simple_repeat 2 53 0 3460 155 55 28 chr11 122381532 122382275 -28401278 + L1MA7 LINE L1 5529 6291 0 369 252 156 7 chr11 122382604 122382739 -28400814 - MIR3 SINE MIR -21 187 33 2047 122 7 20 chr11 122383321 122383625 -28399928 + AluSc SINE Alu 1 300 -9 274 308 47 28 chr11 122383700 122383807 -28399746 - L2 LINE L2 -5 3267 3159 1795 156 3 52 chr11 122383938 122384264 -28399289 - AluSx SINE Alu -2 310 1 1547 162 82 3 chr11 122384676 122384991 -28398562 - L1PB4 LINE L1 0 6156 5817 213 115 39 19 chr11 122385031 122385083 -28398470 + (TA)n Simple_repeat Simple_repeat 2 54 0 256 236 71 71 chr11 122386203 122386330 -28397223 + MIR SINE MIR 71 197 -65 2413 166 22 2 chr11 122386484 122386901 -28396652 - MSTB LTR MaLR 0 426 2 2473 63 7 0 chr11 122387912 122388211 -28395342 - AluY SINE Alu -10 301 1 1358 120 0 29 chr11 122388849 122389057 -28394496 - AluSg/x SINE Alu -1 309 108 758 158 0 10 chr11 122389212 122389363 -28394190 - L1PB4 LINE L1 -363 5791 5651 255 266 78 0 chr11 122390947 122391011 -28392542 - Tigger3(Golem) DNA MER2_type -2960 69 1 2568 141 73 0 chr11 122391050 122391620 -28391933 + L1M4 LINE L1 5170 5775 -403 1158 135 0 0 chr11 122391625 122391795 -28391758 - AluSg/x SINE Alu -9 303 134 7463 26 1 8 chr11 122391802 122392709 -28390844 + L1PA4 LINE L1 5255 6155 0 9061 109 4 28 chr11 122392711 122394215 -28389338 + HERVH LTR ERV1 1520 2987 -4726 5701 91 1 5 chr11 122394209 122395066 -28388487 + HERVH LTR ERV1 3140 3993 -3720 * 4138 139 1 1 chr11 122395068 122395730 -28387823 + HERVH LTR ERV1 4488 5149 -2564 1271 148 19 0 chr11 122395731 122395947 -28387606 + HERVH LTR ERV1 5600 5819 -1894 2059 114 50 16 chr11 122395947 122396324 -28387229 + HERVH LTR ERV1 7324 7713 0 2726 85 92 5 chr11 122396325 122396736 -28386817 + LTR7 LTR ERV1 2 448 -2 2112 220 26 5 chr11 122396745 122397349 -28386204 - L1M4 LINE L1 -3180 2966 2350 22 0 0 0 chr11 122397375 122397397 -28386156 + AT_rich Low_complexity Low_complexity 1 22 0 4115 142 17 20 chr11 122397600 122398074 -28385479 + MER50 LTR ERV1 1 474 -260 2225 88 18 0 chr11 122398074 122398357 -28385196 + AluSc SINE Alu 1 288 -21 4115 142 17 20 chr11 122398357 122398594 -28384959 + MER50 LTR ERV1 474 710 -24 340 297 61 34 chr11 122398603 122399010 -28384543 + L1M4 LINE L1 2401 2818 -3328 1632 166 25 32 chr11 122399628 122399954 -28383599 + AluJo SINE Alu 1 324 0 345 311 53 37 chr11 122400720 122400910 -28382643 - MIR SINE MIR -50 212 20 6028 156 20 21 chr11 122401829 122403198 -28380355 + L1MC1 LINE L1 4964 6333 0 200 105 26 53 chr11 122403388 122403426 -28380127 + MIR SINE MIR 111 147 -61 802 246 106 21 chr11 122403582 122403818 -28379735 + MIR SINE MIR 7 262 0 465 274 109 45 chr11 122403964 122404216 -28379337 - MIR SINE MIR 0 262 6 424 283 69 0 chr11 122405984 122406129 -28377424 + MIR SINE MIR 59 213 -49 427 276 17 0 chr11 122406596 122406712 -28376841 + Charlie8 DNA MER1_type 35 152 -2265 216 244 0 0 chr11 122407060 122407105 -28376448 - MIR SINE MIR 0 262 218 312 189 16 4 chr11 122407205 122407294 -28376259 - L1M1 LINE L1 -723 5581 5490 1809 130 3 75 chr11 122407304 122407665 -28375888 - MER44D DNA MER2_type 0 609 5 23 0 0 0 chr11 122407850 122407873 -28375680 + AT_rich Low_complexity Low_complexity 1 23 0 1258 169 26 40 chr11 122407873 122408289 -28375264 - L1MA9 LINE L1 -22 6290 5785 1096 131 0 0 chr11 122408347 122408522 -28375031 - L1MA9 LINE L1 -738 5574 5400 * 3784 168 6 0 chr11 122408517 122409249 -28374304 - L1MA9 LINE L1 -1095 5051 4316 1562 54 0 54 chr11 122411244 122411448 -28372105 + AluY SINE Alu 1 193 -118 287 106 0 0 chr11 122411448 122411495 -28372058 + AluY SINE Alu 248 294 -7 2059 150 47 26 chr11 122411727 122412107 -28371446 + MLT1B LTR MaLR 3 390 0 373 359 100 31 chr11 122412365 122412655 -28370898 + L2 LINE L2 2963 3272 0 280 298 93 40 chr11 122412803 122412968 -28370585 - MIR3 SINE MIR -18 190 16 432 0 0 0 chr11 122413205 122413253 -28370300 + (CA)n Simple_repeat Simple_repeat 2 49 0 2441 73 0 25 chr11 122414020 122414334 -28369219 - AluY SINE Alu -5 306 1 2319 90 0 13 chr11 122416398 122416698 -28366855 - AluSc SINE Alu -13 296 1 26 50 0 0 chr11 122416779 122416819 -28366734 + AT_rich Low_complexity Low_complexity 1 40 0 227 324 64 69 chr11 122417215 122417388 -28366165 - MIR SINE MIR -1 261 90 348 24 0 0 chr11 122417543 122417584 -28365969 + (TG)n Simple_repeat Simple_repeat 1 41 0 1853 235 30 26 chr11 122419231 122419691 -28363862 + LTR40b LTR ERVL 1 462 0 2397 83 3 22 chr11 122420062 122420376 -28363177 - AluY SINE Alu -3 308 1 199 365 117 21 chr11 122420494 122420639 -28362914 + L2 LINE L2 3089 3247 -25 2104 110 3 32 chr11 122421158 122421466 -28362087 + AluSq SINE Alu 1 299 -14 22 0 0 0 chr11 122422270 122422292 -28361261 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr11 122422646 122422681 -28360872 + AT_rich Low_complexity Low_complexity 1 35 0 411 306 43 57 chr11 122422698 122423048 -28360505 - L1ME LINE L1 -461 5660 5316 317 144 19 0 chr11 122423055 122423119 -28360434 - MLT1E LTR MaLR -466 76 11 1556 135 55 29 chr11 122424215 122424572 -28358981 - MER61B LTR ERV1 0 425 1 301 312 106 67 chr11 122424946 122425427 -28358126 - L1ME LINE L1 -1517 4629 4130 21 36 0 0 chr11 122425689 122425717 -28357836 + AT_rich Low_complexity Low_complexity 1 28 0 756 314 153 38 chr11 122425927 122426482 -28357071 + L3 LINE CR1 284 902 -675 1474 278 14 9 chr11 122426563 122427005 -28356548 - LTR16A LTR ERVL -6 444 1 443 238 0 0 chr11 122427795 122427879 -28355674 - L2 LINE L2 -5 3308 3225 418 276 58 32 chr11 122428038 122428194 -28355359 + L3 LINE CR1 1032 1191 -386 928 268 80 38 chr11 122428301 122428701 -28354852 + MLT1J2 LTR MaLR 34 450 0 1632 197 27 3 chr11 122428708 122429008 -28354545 - AluJo SINE Alu -5 307 1 187 337 96 0 chr11 122429291 122429374 -28354179 + L2 LINE L2 3181 3271 -1 239 0 32 0 chr11 122429751 122429782 -28353771 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 232 321 85 38 chr11 122430174 122430280 -28353273 + L2 LINE L2 3156 3266 -6 365 232 11 74 chr11 122430384 122430479 -28353074 + L2 LINE L2 3182 3270 -43 1949 217 34 61 chr11 122430621 122431266 -28352287 - MLT1E2 LTR MaLR 0 626 1 575 227 24 54 chr11 122431269 122431479 -28352074 - MLT1E LTR MaLR -342 200 1 671 292 51 53 chr11 122431479 122431910 -28351643 + HAL1 LINE L1 2076 2505 -2 369 356 106 53 chr11 122432324 122432684 -28350869 + L2 LINE L2 2894 3272 0 324 269 41 89 chr11 122432723 122433094 -28350459 - MLT1H LTR MaLR -16 533 99 249 267 116 12 chr11 122433195 122433281 -28350272 - MIR3 SINE MIR -13 195 101 246 274 177 12 chr11 122433395 122433559 -28349994 - L2 LINE L2 -1649 1665 1475 248 356 40 48 chr11 122433821 122434071 -28349482 - L2 LINE L2 -1898 1416 1169 22 56 0 0 chr11 122434496 122434532 -28349021 + AT_rich Low_complexity Low_complexity 1 36 0 429 301 62 28 chr11 122434581 122434757 -28348796 - MIR3 SINE MIR -11 197 16 259 211 53 0 chr11 122435175 122435232 -28348321 - HAL1 LINE L1 -965 1542 1483 1054 57 14 0 chr11 122435233 122435373 -28348180 - L1PA5 LINE L1 0 6154 6013 703 12 0 0 chr11 122435373 122435456 -28348097 + L1PA5 LINE L1 5791 5873 -281 428 349 64 48 chr11 122435563 122435893 -28347660 - L1MEd LINE L1 -4887 1232 898 2034 144 8 24 chr11 122436034 122436408 -28347145 - L1MB1 LINE L1 -3 6165 5798 180 0 0 0 chr11 122436853 122436873 -28346680 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2156 94 7 3 chr11 122436883 122437170 -28346383 - AluSx SINE Alu -24 288 1 192 97 0 0 chr11 122437482 122437513 -28346040 + (T)n Simple_repeat Simple_repeat 1 31 0 2588 112 44 12 chr11 122437727 122438138 -28345415 - MER61B LTR ERV1 -1 424 1 434 271 186 5 chr11 122439404 122439625 -28343928 - MIR SINE MIR -1 261 1 21 36 0 0 chr11 122440867 122440895 -28342658 + AT_rich Low_complexity Low_complexity 1 28 0 774 266 89 22 chr11 122440977 122441315 -28342238 - L2 LINE L2 0 3313 2918 583 304 122 30 chr11 122441483 122441635 -28341918 + MIR SINE MIR 4 187 -75 1941 186 57 59 chr11 122441635 122442141 -28341412 + MLT1D LTR MaLR 1 505 0 583 304 122 30 chr11 122442141 122442225 -28341328 + MIR SINE MIR 187 262 0 23 33 0 0 chr11 122442261 122442291 -28341262 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 122443231 122443260 -28340293 + AT_rich Low_complexity Low_complexity 1 29 0 2685 264 108 84 chr11 122443277 122445640 -28337913 - HAL1 LINE L1 -86 2421 4 32 57 0 0 chr11 122445647 122445700 -28337853 + AT_rich Low_complexity Low_complexity 1 53 0 587 330 40 5 chr11 122445795 122445995 -28337558 + MIR SINE MIR 12 218 -44 430 300 36 99 chr11 122446975 122447479 -28336074 + LTR67 LTR ERVL 12 483 -74 331 236 34 45 chr11 122448972 122449061 -28334492 + L2 LINE L2 2990 3077 -195 229 186 17 51 chr11 122449173 122449232 -28334321 + L2 LINE L2 3216 3272 0 401 368 140 19 chr11 122449310 122449845 -28333708 - L2 LINE L2 -478 2836 2237 181 329 63 25 chr11 122451246 122451325 -28332228 + MIR3 SINE MIR 87 168 -40 1198 200 69 13 chr11 122451383 122451824 -28331729 + MLT1D LTR MaLR 1 477 -28 192 179 26 0 chr11 122452195 122452234 -28331319 - L2 LINE L2 0 3313 3274 318 26 0 0 chr11 122452410 122452449 -28331104 + (CA)n Simple_repeat Simple_repeat 2 40 0 266 189 40 14 chr11 122452533 122452607 -28330946 + (TA)n Simple_repeat Simple_repeat 1 76 0 447 312 26 77 chr11 122452683 122453068 -28330485 - L2 LINE L2 -238 3034 2660 791 274 11 23 chr11 122453171 122453434 -28330119 - MIR SINE MIR -1 261 2 1093 160 5 57 chr11 122453602 122453814 -28329739 - AluJo SINE Alu -22 290 90 318 271 53 53 chr11 122454066 122454199 -28329354 + L1ME4a LINE L1 5988 6120 -1 196 280 20 0 chr11 122454377 122454427 -28329126 - L3 LINE CR1 -3 1574 1524 346 333 21 21 chr11 122454604 122454748 -28328805 + L2 LINE L2 2533 2676 -638 395 244 172 0 chr11 122454821 122454987 -28328566 - MLT1J2 LTR MaLR 0 422 263 333 208 44 18 chr11 122455064 122455171 -28328382 - MLT1J2 LTR MaLR -320 127 21 444 336 0 0 chr11 122455221 122455361 -28328192 + L2 LINE L2 2937 3076 -237 1057 272 46 33 chr11 122455362 122455821 -28327732 + MLT1J LTR MaLR 1 465 -46 202 200 0 0 chr11 122455840 122455880 -28327673 - MIR3 SINE MIR -52 156 117 212 288 65 86 chr11 122456216 122456355 -28327198 - L2 LINE L2 -251 3021 2886 247 315 68 41 chr11 122458211 122458357 -28325196 - MIR3 SINE MIR -1 207 58 1940 89 0 0 chr11 122458384 122458630 -28324923 - AluY SINE Alu -5 306 61 1976 121 113 35 chr11 122458757 122459154 -28324399 + MSTA LTR MaLR 1 428 0 1520 208 39 20 chr11 122459282 122459638 -28323915 - MLT1A2 LTR MaLR -11 363 1 1075 136 6 6 chr11 122459718 122459880 -28323673 + AluJb SINE Alu 137 298 -14 183 80 0 0 chr11 122460636 122460661 -28322892 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 252 91 18 36 chr11 122461657 122461712 -28321841 + L1MA6 LINE L1 6242 6295 -5 224 258 0 101 chr11 122462097 122462186 -28321367 - MIR SINE MIR -120 142 63 803 253 57 79 chr11 122462191 122462598 -28320955 - LTR33 LTR ERVL -112 409 12 5819 99 16 30 chr11 122462792 122462989 -28320564 + MER4D LTR ERV1 1 199 -673 2022 131 14 3 chr11 122462989 122463319 -28320234 + AluSx SINE Alu 1 333 0 5819 99 16 30 chr11 122463319 122464005 -28319548 + MER4D LTR ERV1 199 872 0 382 327 26 7 chr11 122464033 122464186 -28319367 + MIR SINE MIR 54 209 -53 916 271 20 8 chr11 122464197 122464441 -28319112 + MIR SINE MIR 10 256 -6 478 277 9 9 chr11 122464983 122465095 -28318458 - L2 LINE L2 -19 3294 3183 401 285 120 45 chr11 122465705 122466103 -28317450 - MLT1J2 LTR MaLR -7 406 21 554 187 65 0 chr11 122467030 122467137 -28316416 - MER81 DNA DNA 0 114 1 197 280 206 9 chr11 122467434 122467541 -28316012 - L2 LINE L2 0 3272 3145 783 326 168 15 chr11 122467612 122468208 -28315345 - L2 LINE L2 -167 3146 2455 242 331 85 15 chr11 122468225 122468355 -28315198 + L2 LINE L2 3134 3272 0 310 161 0 18 chr11 122469133 122469189 -28314364 + L2 LINE L2 3218 3272 0 28 29 0 0 chr11 122469629 122469664 -28313889 + AT_rich Low_complexity Low_complexity 1 35 0 232 299 55 8 chr11 122469782 122469909 -28313644 - L1MC4a LINE L1 -1870 5938 5806 508 225 120 16 chr11 122469918 122470109 -28313444 - L1MC4a LINE L1 -372 5749 5539 3097 203 35 9 chr11 122471096 122471731 -28311822 + MER82 DNA MER2_type 3 653 0 2310 143 90 7 chr11 122472082 122472503 -28311050 - L1PA16 LINE L1 0 6166 5711 397 198 0 0 chr11 122472580 122472661 -28310892 + MER53 DNA DNA 4 84 -105 2830 161 32 15 chr11 122472899 122473434 -28310119 - L1MB1 LINE L1 -1 6167 5624 494 242 0 73 chr11 122474191 122474356 -28309197 - L2 LINE L2 0 3313 3161 1064 239 145 68 chr11 122474828 122474860 -28308693 - L2 LINE L2 0 3313 3285 2292 145 28 14 chr11 122474860 122475219 -28308334 - THE1B LTR MaLR 0 364 1 1064 239 145 68 chr11 122475219 122475815 -28307738 - L2 LINE L2 -28 3285 2651 384 178 158 33 chr11 122476040 122476192 -28307361 - MER5B DNA MER1_type -4 174 4 761 249 5 5 chr11 122476490 122476675 -28306878 - MER5A DNA MER1_type -4 185 1 2240 237 59 19 chr11 122477538 122478267 -28305286 - L1ME1 LINE L1 -5 6161 5404 275 384 34 24 chr11 122478334 122478540 -28305013 + L3 LINE CR1 219 426 -1151 798 39 0 19 chr11 122479417 122479521 -28304032 + L1PA3 LINE L1 6051 6152 -3 231 318 92 52 chr11 122479970 122480143 -28303410 - MER5A DNA MER1_type 0 189 10 266 283 0 0 chr11 122480510 122480570 -28302983 + L2 LINE L2 3213 3272 0 591 283 78 15 chr11 122481083 122481493 -28302060 + L1M4 LINE L1 2754 3189 -2957 230 185 68 27 chr11 122481673 122481819 -28301734 + (TA)n Simple_repeat Simple_repeat 1 152 0 996 304 68 22 chr11 122481929 122482907 -28300646 + L1M4 LINE L1 3341 4362 -1784 23 33 0 0 chr11 122482982 122483012 -28300541 + AT_rich Low_complexity Low_complexity 1 30 0 285 326 124 24 chr11 122483012 122483600 -28299953 + L1M4 LINE L1 4513 5159 -987 412 339 0 0 chr11 122483681 122483802 -28299751 + L2 LINE L2 3192 3312 -1 25 95 0 0 chr11 122484053 122484127 -28299426 + AT_rich Low_complexity Low_complexity 1 74 0 567 173 55 0 chr11 122484151 122484261 -28299292 - FLAM_A SINE Alu -17 116 1 227 279 0 0 chr11 122485190 122485251 -28298302 - MLT1K LTR MaLR -2 586 526 282 266 63 21 chr11 122485844 122485987 -28297566 + L1M4 LINE L1 2344 2492 -3654 736 62 0 0 chr11 122486448 122486545 -28297008 - AluSg/x SINE Alu -1 309 213 32 0 0 0 chr11 122486557 122486589 -28296964 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr11 122486606 122486642 -28296911 + AT_rich Low_complexity Low_complexity 1 36 0 201 74 0 0 chr11 122486674 122486701 -28296852 + (TG)n Simple_repeat Simple_repeat 2 28 0 243 370 22 0 chr11 122487217 122487309 -28296244 - MIR SINE MIR -149 113 20 309 198 111 0 chr11 122487427 122487508 -28296045 - L2 LINE L2 -44 3269 3180 1302 164 5 10 chr11 122487543 122487751 -28295802 + AluJb SINE Alu 85 291 -21 231 179 26 26 chr11 122487949 122488027 -28295526 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 243 333 76 0 chr11 122489343 122489448 -28294105 - L2 LINE L2 0 3313 3201 322 237 145 53 chr11 122490039 122490191 -28293362 + MIR SINE MIR 88 253 -9 931 277 78 64 chr11 122490428 122490976 -28292577 + LTR67 LTR ERVL 2 557 0 749 291 42 93 chr11 122491284 122491714 -28291839 - L2 LINE L2 -5 3308 2901 566 335 55 26 chr11 122491722 122492068 -28291485 - L2 LINE L2 -967 2347 1992 255 31 0 0 chr11 122492430 122492462 -28291091 + (TG)n Simple_repeat Simple_repeat 2 33 0 216 256 12 81 chr11 122493031 122493117 -28290436 - L2 LINE L2 0 3272 3193 203 231 123 62 chr11 122494677 122494742 -28288811 - MIR3 SINE MIR -24 184 116 3090 223 70 24 chr11 122494854 122495922 -28287631 - L1ME2 LINE L1 -19 6214 5106 1855 205 20 36 chr11 122495991 122496435 -28287118 - MLT1C LTR MaLR 0 467 31 540 200 40 8 chr11 122496469 122496594 -28286959 - MER106A DNA MER1_type -36 200 72 4642 244 62 22 chr11 122496594 122498095 -28285458 - L1ME2 LINE L1 -1359 4856 3274 1585 176 44 0 chr11 122498095 122498368 -28285185 - AluJb SINE Alu -27 285 1 4642 244 62 22 chr11 122498368 122498619 -28284934 - L1ME2 LINE L1 -2941 3274 3034 317 266 11 21 chr11 122498624 122498718 -28284835 + LTR46 LTR ERV1 1 93 -367 243 221 71 26 chr11 122498779 122498892 -28284661 + LTR46 LTR ERV1 309 426 -34 2311 243 66 18 chr11 122498910 122500088 -28283465 - L1ME2 LINE L1 -3185 3030 1844 5719 250 69 11 chr11 122500111 122501581 -28281972 - L1M4 LINE L1 -1047 5099 3470 261 57 0 0 chr11 122501581 122501616 -28281937 + (TG)n Simple_repeat Simple_repeat 1 35 0 5719 250 69 11 chr11 122501616 122502247 -28281306 - L1M4 LINE L1 -2676 3470 2877 1412 230 30 48 chr11 122502282 122502786 -28280767 + L1ME1 LINE L1 5665 6159 -7 429 54 0 0 chr11 122504329 122504385 -28279168 + (CA)n Simple_repeat Simple_repeat 2 57 0 312 314 88 52 chr11 122504399 122504593 -28278960 + MIR SINE MIR 13 213 -49 198 178 89 0 chr11 122504655 122504700 -28278853 - L2 LINE L2 0 3313 3265 276 30 0 0 chr11 122504844 122504877 -28278676 + (CA)n Simple_repeat Simple_repeat 2 34 0 253 220 0 17 chr11 122507510 122507569 -28275984 + MLT1J LTR MaLR 5 62 -449 465 332 77 22 chr11 122507725 122507960 -28275593 + MLT1J LTR MaLR 310 501 -10 25 0 0 0 chr11 122508009 122508034 -28275519 + AT_rich Low_complexity Low_complexity 1 25 0 275 224 15 0 chr11 122508542 122508609 -28274944 - LTR67 LTR ERVL -117 440 373 2250 105 3 0 chr11 122508999 122509295 -28274258 + AluSp SINE Alu 1 297 -16 423 321 15 8 chr11 122509393 122509527 -28274026 - L2 LINE L2 0 3313 3179 243 269 25 50 chr11 122509687 122509806 -28273747 + MER103 DNA DNA 6 121 -45 216 158 0 0 chr11 122510507 122510545 -28273008 + (CA)n Simple_repeat Simple_repeat 2 39 0 354 331 40 40 chr11 122512476 122512651 -28270902 + L2 LINE L2 3098 3272 0 507 252 0 24 chr11 122512775 122512898 -28270655 + MER82 DNA MER2_type 1 120 -533 1496 101 5 10 chr11 122513013 122513212 -28270341 - AluSg/x SINE Alu -12 298 101 2028 210 42 2 chr11 122513545 122513974 -28269579 + MER82 DNA MER2_type 201 646 -7 260 289 48 0 chr11 122514011 122514094 -28269459 + MIR SINE MIR 163 249 -13 253 329 20 27 chr11 122514101 122514250 -28269303 - L2 LINE L2 -205 3067 2920 243 388 7 7 chr11 122514671 122514818 -28268735 + MER5A DNA MER1_type 43 189 0 1947 152 3 3 chr11 122515609 122515898 -28267655 + AluSx SINE Alu 1 289 -23 2106 180 21 40 chr11 122515962 122516434 -28267119 - MER66B LTR ERV1 -23 463 1 491 305 52 34 chr11 122516818 122517051 -28266502 + MIR SINE MIR 20 256 -6 318 167 0 0 chr11 122517472 122517532 -28266021 + (CA)n Simple_repeat Simple_repeat 1 60 0 1994 182 15 39 chr11 122518268 122518674 -28264879 - MSTD LTR MaLR 0 396 1 385 274 38 0 chr11 122518763 122518869 -28264684 + MIR SINE MIR 15 124 -138 2368 102 0 3 chr11 122518921 122519226 -28264327 - AluSc SINE Alu -5 304 1 2387 143 34 5 chr11 122519302 122519714 -28263839 + MSTA LTR MaLR 1 424 -4 222 316 0 6 chr11 122520746 122520907 -28262646 + (TG)n Simple_repeat Simple_repeat 1 159 0 679 252 155 0 chr11 122521017 122521223 -28262330 + MIR SINE MIR 15 252 -10 4221 71 62 7 chr11 122521815 122522213 -28261340 + LTR66 LTR ERVL 1 442 -168 567 107 0 0 chr11 122522213 122522297 -28261256 + (TA)n Simple_repeat Simple_repeat 1 84 0 4221 71 62 7 chr11 122522297 122522476 -28261077 + LTR66 LTR ERVL 442 610 0 240 35 0 0 chr11 122522520 122522549 -28261004 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 1218 158 64 5 chr11 122522681 122522884 -28260669 + AluJb SINE Alu 85 299 -13 2033 176 70 12 chr11 122523436 122523597 -28259956 + MSTB LTR MaLR 1 151 -275 2268 94 3 13 chr11 122523597 122523906 -28259647 + AluSg SINE Alu 1 306 -4 2033 176 70 12 chr11 122523906 122524147 -28259406 + MSTB LTR MaLR 151 426 0 9272 165 16 16 chr11 122524147 122525798 -28257755 + MSTB-int LTR MaLR 1 1651 0 542 176 92 0 chr11 122525798 122525917 -28257636 + MSTB LTR MaLR 1 130 -296 189 0 0 0 chr11 122526876 122526897 -28256656 + (ATTTG)n Simple_repeat Simple_repeat 4 24 0 5599 179 34 18 chr11 122527838 122529502 -28254051 + L1PA16 LINE L1 3909 5754 -412 2187 75 3 0 chr11 122529502 122529784 -28253769 + AluY SINE Alu 29 311 0 5599 179 34 18 chr11 122529784 122530202 -28253351 + L1PA16 LINE L1 5754 6164 -2 29 28 0 0 chr11 122530205 122530241 -28253312 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr11 122530383 122530405 -28253148 + AT_rich Low_complexity Low_complexity 1 22 0 189 250 45 0 chr11 122530700 122530744 -28252809 - MER5B DNA MER1_type -125 53 8 519 239 179 0 chr11 122530759 122530893 -28252660 - MER5A DNA MER1_type 0 189 32 239 263 35 0 chr11 122531234 122531291 -28252262 - MIR SINE MIR -107 155 97 220 154 39 39 chr11 122531651 122531703 -28251850 + GA-rich Low_complexity Low_complexity 4 55 0 13650 126 37 24 chr11 122532423 122532471 -28251082 + Tigger1 DNA MER2_type 12 58 -2360 1945 123 0 52 chr11 122532471 122532779 -28250774 - AluSq SINE Alu -16 297 6 13650 126 37 24 chr11 122532779 122533332 -28250221 + Tigger1 DNA MER2_type 58 603 -1815 194 0 39 0 chr11 122533332 122533358 -28250195 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 13650 126 37 24 chr11 122533358 122535132 -28248421 + Tigger1 DNA MER2_type 603 2418 0 1525 236 112 7 chr11 122535171 122535625 -28247928 - LTR33 LTR ERVL -8 513 12 366 269 100 8 chr11 122536188 122536318 -28247235 + Charlie8 DNA MER1_type 77 218 -2199 1710 213 60 22 chr11 122536581 122537031 -28246522 + MLT1C LTR MaLR 1 467 0 321 183 17 0 chr11 122538037 122538097 -28245456 - LTR52-int LTR ERVL -3493 63 3 1843 205 50 22 chr11 122538099 122538467 -28245086 - LTR52 LTR ERVL -3 418 37 1701 197 3 0 chr11 122538467 122538761 -28244792 + AluJb SINE Alu 1 295 -17 1843 205 50 22 chr11 122538761 122538796 -28244757 - LTR52 LTR ERVL -384 37 4 458 275 101 17 chr11 122538835 122539013 -28244540 + MIR SINE MIR 62 254 -8 2211 115 0 19 chr11 122539505 122539819 -28243734 + AluSg SINE Alu 1 308 -2 550 192 77 8 chr11 122539900 122540030 -28243523 + L1ME4a LINE L1 5971 6109 -12 337 322 130 53 chr11 122540050 122540129 -28243424 + L2 LINE L2 2742 2813 -459 2915 179 62 10 chr11 122540129 122540643 -28242910 + MLT1F LTR MaLR 1 541 -1 337 322 130 53 chr11 122540643 122541043 -28242510 + L2 LINE L2 2813 3267 -5 1912 183 51 22 chr11 122541888 122542243 -28241310 - MLT1A1 LTR MaLR 0 365 1 2178 128 3 6 chr11 122542352 122542665 -28240888 - AluSx SINE Alu 0 312 1 267 309 72 5 chr11 122542665 122542859 -28240694 - L1M4 LINE L1 -2661 3485 3279 271 246 0 0 chr11 122542933 122542998 -28240555 + L1ME3A LINE L1 6096 6160 -10 990 293 128 49 chr11 122544046 122544622 -28238931 - L1MEd LINE L1 -5417 702 81 1792 171 38 52 chr11 122545190 122545558 -28237995 + MLT1A1 LTR MaLR 1 363 -2 222 163 23 0 chr11 122545631 122545674 -28237879 + (TA)n Simple_repeat Simple_repeat 2 45 0 2150 116 7 0 chr11 122546087 122546379 -28237174 - AluSx SINE Alu -18 294 1 383 259 80 0 chr11 122546540 122546652 -28236901 + L2 LINE L2 3193 3313 0 659 261 132 46 chr11 122548390 122548784 -28234769 + L1ME LINE L1 5374 5801 -365 645 240 146 10 chr11 122550566 122550758 -28232795 + MER58A DNA MER1_type 6 223 -1 21 0 0 0 chr11 122551229 122551250 -28232303 + AT_rich Low_complexity Low_complexity 1 21 0 2545 193 110 18 chr11 122551822 122552838 -28230715 + L1MC3 LINE L1 4724 5403 -743 19945 156 61 14 chr11 122552855 122553048 -28230505 + L1 LINE L1 16 198 -7367 1639 179 13 19 chr11 122553048 122553356 -28230197 + AluJb SINE Alu 1 306 -6 19945 156 61 14 chr11 122553356 122555567 -28227986 + L1 LINE L1 198 2696 -4869 2158 119 0 0 chr11 122555567 122555861 -28227692 + AluY SINE Alu 1 294 -17 19945 156 61 14 chr11 122555861 122557516 -28226037 + L1 LINE L1 2696 4271 -3294 689 188 13 34 chr11 122557529 122557678 -28225875 - L1 LINE L1 -3628 2518 2373 2770 200 15 12 chr11 122557679 122558340 -28225213 + L1 LINE L1 4269 4931 -2634 1966 123 3 0 chr11 122558336 122558654 -28224899 + L1 LINE L1 5985 6303 -1262 * 4289 168 79 4 chr11 122558661 122559488 -28224065 + L1MC3 LINE L1 6896 7784 -1 390 277 142 7 chr11 122559490 122559638 -28223915 - MIR SINE MIR -87 175 8 2563 42 7 3 chr11 122559662 122559970 -28223583 - AluY SINE Alu -2 309 1 182 36 0 36 chr11 122560501 122560529 -28223024 + (TCCCC)n Simple_repeat Simple_repeat 3 29 0 192 77 0 0 chr11 122560573 122560599 -28222954 + (TC)n Simple_repeat Simple_repeat 2 27 0 1757 171 38 0 chr11 122560707 122561000 -28222553 - AluJb SINE Alu -8 304 1 1958 170 40 16 chr11 122561132 122561509 -28222044 - L1PA15 LINE L1 -8 6157 5772 185 283 33 50 chr11 122561786 122561846 -28221707 + MIR SINE MIR 16 74 -188 4542 130 71 51 chr11 122562701 122564131 -28219422 + pTR5 LTR ERV1 742 2606 0 49 18 0 0 chr11 122564920 122564976 -28218577 + AT_rich Low_complexity Low_complexity 1 56 0 7258 151 46 3 chr11 122565396 122567591 -28215962 + L1MA5A LINE L1 4019 6292 -5 651 196 7 43 chr11 122567633 122567771 -28215782 + MLT1G LTR MaLR 437 569 -21 360 318 31 0 chr11 122567855 122567984 -28215569 + MLT1L LTR MaLR 434 566 -49 2255 106 3 3 chr11 122568473 122568774 -28214779 - AluSg SINE Alu -9 301 1 1557 171 47 92 chr11 122569144 122569524 -28214029 - MLT1A1 LTR MaLR -2 363 1 180 255 20 20 chr11 122570466 122570517 -28213036 + MIR SINE MIR 200 250 -12 697 221 38 6 chr11 122570995 122571153 -28212400 - MIR SINE MIR -86 176 14 2341 90 6 0 chr11 122571702 122572013 -28211540 - AluSp SINE Alu 0 313 1 298 194 97 0 chr11 122573214 122573286 -28210267 - MLT1J2 LTR MaLR -21 429 351 232 358 98 61 chr11 122573373 122573700 -28209853 - L2 LINE L2 -9 3263 2925 381 79 4 7 chr11 122573710 122573770 -28209783 + L1P4 LINE L1 5728 5786 -377 752 132 0 0 chr11 122573771 122573877 -28209676 - AluSc SINE Alu -202 107 2 1709 175 11 7 chr11 122573882 122574167 -28209386 - AluJo SINE Alu -20 292 7 558 200 64 0 chr11 122574170 122574295 -28209258 + L1MA10 LINE L1 6201 6333 -1 3259 61 15 0 chr11 122574309 122574701 -28208852 + L1PA11 LINE L1 5769 6166 -8 22 0 0 0 chr11 122574703 122574725 -28208828 + AT_rich Low_complexity Low_complexity 1 22 0 404 321 112 55 chr11 122575063 122575715 -28207838 - L2 LINE L2 -821 2493 1805 301 297 43 84 chr11 122575718 122575891 -28207662 + L1MC4a LINE L1 3118 3274 -2872 2167 106 7 7 chr11 122575891 122576184 -28207369 + AluSx SINE Alu 1 293 -19 301 297 43 84 chr11 122576184 122576333 -28207220 + L1MC4a LINE L1 3274 3427 -2719 452 305 158 44 chr11 122576722 122577286 -28206267 + L1MC4a LINE L1 4613 5240 -906 596 226 156 10 chr11 122577293 122577492 -28206061 + L1MC4a LINE L1 5261 5488 -2320 2078 194 34 38 chr11 122577500 122577999 -28205554 - MLT1D LTR MaLR -6 499 3 1111 238 77 90 chr11 122578001 122578544 -28205009 + L1MC4a LINE L1 5489 6024 -1784 215 312 169 0 chr11 122578619 122578696 -28204857 + L2 LINE L2 2999 3088 -184 391 264 47 9 chr11 122579260 122579365 -28204188 + HsTC2c DNA Tc2 87 195 -534 385 228 41 32 chr11 122579365 122579488 -28204065 + MER94 DNA DNA 2 125 -9 1928 247 35 34 chr11 122579490 122580025 -28203528 + HsTC2c DNA Tc2 192 727 -2 286 61 41 0 chr11 122580552 122580601 -28202952 + (TTG)n Simple_repeat Simple_repeat 1 51 0 2019 111 7 0 chr11 122580609 122580880 -28202673 - AluSx SINE Alu -39 273 1 201 147 0 0 chr11 122580960 122580994 -28202559 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 246 165 165 13 chr11 122580995 122581074 -28202479 - L1MC4 LINE L1 -1340 6702 6612 396 230 22 0 chr11 122581082 122581217 -28202336 + (TA)n Simple_repeat Simple_repeat 1 138 0 825 157 0 0 chr11 122582468 122582589 -28200964 + Tigger7 DNA MER2_type 2367 2487 0 1835 143 111 13 chr11 122583715 122584022 -28199531 + MER44D DNA MER2_type 1 607 -2 397 254 100 15 chr11 122584458 122584588 -28198965 - MER5A DNA MER1_type -42 147 7 260 289 31 21 chr11 122584629 122584726 -28198827 - L2 LINE L2 -470 2844 2747 1840 207 66 36 chr11 122585175 122585673 -28197880 - Charlie1b DNA MER1_type -1 522 10 290 357 48 8 chr11 122586000 122586126 -28197427 - MER5B DNA MER1_type -43 135 5 23 68 0 0 chr11 122586783 122586827 -28196726 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr11 122587466 122587487 -28196066 + AT_rich Low_complexity Low_complexity 1 21 0 2176 205 54 56 chr11 122587591 122588098 -28195455 - L1MA9 LINE L1 -25 6287 5780 261 0 0 0 chr11 122588098 122588127 -28195426 + (GA)n Simple_repeat Simple_repeat 2 30 0 2176 205 54 56 chr11 122588127 122588262 -28195291 - L1MA9 LINE L1 -532 5780 5646 2318 87 0 3 chr11 122588412 122588700 -28194853 + AluSc SINE Alu 1 287 -22 310 125 0 31 chr11 122588841 122588905 -28194648 + (GGAA)n Simple_repeat Simple_repeat 2 63 0 496 332 125 0 chr11 122589321 122589553 -28194000 + MIR SINE MIR 1 261 -1 181 270 27 0 chr11 122589560 122589597 -28193956 + L2 LINE L2 3220 3257 -15 21 0 0 0 chr11 122589691 122589712 -28193841 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr11 122590599 122590641 -28192912 + AT_rich Low_complexity Low_complexity 1 42 0 2005 132 17 0 chr11 122592378 122592609 -28190944 - AluSx SINE Alu 0 312 125 180 0 0 0 chr11 122592609 122592629 -28190924 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 2005 132 17 0 chr11 122592629 122592757 -28190796 - AluSx SINE Alu -187 125 1 186 150 0 0 chr11 122592757 122592797 -28190756 + (TTTTC)n Simple_repeat Simple_repeat 3 42 0 22 0 0 0 chr11 122593352 122593374 -28190179 + AT_rich Low_complexity Low_complexity 1 22 0 2279 114 0 0 chr11 122594950 122595248 -28188305 + AluSq SINE Alu 1 298 -15 1856 174 0 6 chr11 122595321 122595632 -28187921 - AluJo SINE Alu -2 310 2 2273 97 0 13 chr11 122595640 122595938 -28187615 + AluSq SINE Alu 1 294 -19 490 269 40 7 chr11 122596235 122596384 -28187169 + MIR SINE MIR 53 206 -56 291 375 47 0 chr11 122596575 122596703 -28186850 + L2 LINE L2 3138 3271 -1 201 258 152 40 chr11 122596711 122596862 -28186691 + L2 LINE L2 2867 3034 -238 462 191 8 46 chr11 122598279 122598410 -28185143 + L1MB8 LINE L1 6044 6169 -9 201 74 0 0 chr11 122598450 122598477 -28185076 + (TG)n Simple_repeat Simple_repeat 2 28 0 213 39 0 0 chr11 122598504 122598530 -28185023 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 50 0 0 0 chr11 122598561 122598611 -28184942 + AT_rich Low_complexity Low_complexity 1 50 0 452 288 35 66 chr11 122598722 122598920 -28184633 + MIR SINE MIR 14 205 -57 974 256 78 68 chr11 122599423 122600014 -28183539 + L1MEd LINE L1 587 1183 -4936 1433 58 0 21 chr11 122600114 122600302 -28183251 - AluY SINE Alu -71 240 57 219 260 0 0 chr11 122601846 122601896 -28181657 - L2 LINE L2 -1 3312 3263 193 335 92 57 chr11 122601885 122602321 -28181232 + L2 LINE L2 1957 2407 -907 * 2096 295 91 28 chr11 122602651 122603701 -28179852 - L2 LINE L2 -9 3304 2201 948 169 127 0 chr11 122604461 122604627 -28178926 - MER5A DNA MER1_type -2 187 1 224 171 132 26 chr11 122606666 122606742 -28176811 - MIR SINE MIR -74 188 105 183 129 0 0 chr11 122606834 122606865 -28176688 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 351 379 71 5 chr11 122607110 122607321 -28176232 - L3 LINE CR1 -17 1560 1336 393 228 233 79 chr11 122607361 122607550 -28176003 + MIR SINE MIR 40 257 -5 260 98 0 0 chr11 122607520 122607561 -28175992 + L2 LINE L2 3273 3313 0 * 341 277 164 44 chr11 122608671 122608830 -28174723 + MIR3 SINE MIR 10 187 -21 2175 96 0 49 chr11 122609521 122609845 -28173708 - AluSg SINE Alu -2 308 1 197 217 67 17 chr11 122609947 122610007 -28173546 + MER5B DNA MER1_type 1 63 -115 1951 167 0 0 chr11 122610007 122610318 -28173235 + AluSx SINE Alu 1 311 -1 192 274 65 73 chr11 122610863 122610987 -28172566 - MER5B DNA MER1_type -50 128 6 272 263 76 25 chr11 122611294 122611412 -28172141 - MIR SINE MIR -30 232 109 2234 89 0 3 chr11 122611517 122611799 -28171754 - AluSx SINE Alu -31 281 1 1043 227 108 65 chr11 122612534 122612996 -28170557 + MLT1D LTR MaLR 23 504 -1 297 0 0 0 chr11 122613444 122613477 -28170076 + (CA)n Simple_repeat Simple_repeat 2 34 0 325 275 87 20 chr11 122614837 122614961 -28168592 + MIR3 SINE MIR 52 186 -22 245 347 0 0 chr11 122614986 122615084 -28168469 - L1MA9 LINE L1 -38 6274 6177 436 265 68 12 chr11 122615202 122615364 -28168189 - L1MA9 LINE L1 -135 6177 6007 195 42 0 0 chr11 122615608 122615632 -28167921 + (T)n Simple_repeat Simple_repeat 1 24 0 27 0 0 0 chr11 122615648 122615675 -28167878 + GC_rich Low_complexity Low_complexity 1 27 0 505 195 29 28 chr11 122617081 122617257 -28166296 - MIR SINE MIR 0 262 8 1393 185 121 19 chr11 122617325 122617482 -28166071 + MLT1A2 LTR MaLR 9 149 -225 363 23 0 0 chr11 122617482 122617526 -28166027 + (TC)n Simple_repeat Simple_repeat 1 44 0 1393 185 121 19 chr11 122617526 122617681 -28165872 + MLT1A2 LTR MaLR 149 353 -21 383 292 246 8 chr11 122617684 122617944 -28165609 + L3 LINE CR1 1247 1568 -9 184 319 26 52 chr11 122618097 122618213 -28165340 + L2 LINE L2 2998 3110 -162 1748 227 18 45 chr11 122618256 122618701 -28164852 - MLT1C LTR MaLR 0 467 35 2161 115 3 0 chr11 122618707 122618995 -28164558 + AluSx SINE Alu 11 299 -13 216 0 0 0 chr11 122619111 122619135 -28164418 + (TA)n Simple_repeat Simple_repeat 2 25 0 275 248 101 47 chr11 122619221 122619350 -28164203 - L2 LINE L2 -5 3308 3173 4283 177 34 4 chr11 122619411 122620123 -28163430 + MER44D DNA MER2_type 1 605 0 1829 92 68 44 chr11 122622106 122622401 -28161152 - AluSc SINE Alu -4 305 4 248 170 94 0 chr11 122622838 122622891 -28160662 + L2 LINE L2 3214 3271 -1 229 238 214 16 chr11 122624046 122624172 -28159381 - MIR SINE MIR -1 261 111 186 258 135 11 chr11 122624115 122624204 -28159349 - L2 LINE L2 -769 2545 2446 * 1657 166 6 64 chr11 122625915 122626229 -28157324 - AluJo SINE Alu -16 296 1 6911 33 5 2 chr11 122627516 122628324 -28155229 - L1PA5 LINE L1 -1 6153 5344 2362 68 3 7 chr11 122628648 122628943 -28154610 + AluSc SINE Alu 1 294 -15 2015 123 39 32 chr11 122629111 122629420 -28154133 - AluSx SINE Alu -1 311 1 281 98 0 39 chr11 122630010 122630061 -28153492 + (CATA)n Simple_repeat Simple_repeat 4 52 0 296 250 13 13 chr11 122630412 122630488 -28153065 + L2 LINE L2 3192 3267 -5 938 171 0 18 chr11 122630966 122631130 -28152423 + AluJb SINE Alu 138 298 -14 7920 37 1 3 chr11 122631347 122632436 -28151117 + L1PA5 LINE L1 5065 6152 -2 224 256 50 74 chr11 122633223 122633344 -28150209 + L3 LINE CR1 1139 1256 -321 * 239 258 30 0 chr11 122633336 122633402 -28150151 + L2 LINE L2 3205 3272 0 220 364 0 13 chr11 122633490 122633567 -28149986 + L2 LINE L2 3230 3305 -8 237 259 19 0 chr11 122633589 122633643 -28149910 + L3 LINE CR1 1386 1440 -137 739 240 19 62 chr11 122634176 122634434 -28149119 - MER112 DNA MER1_type -8 252 6 424 249 24 85 chr11 122634457 122634481 -28149072 + MIR SINE MIR 6 30 -232 2276 113 0 0 chr11 122634481 122634773 -28148780 + AluSc SINE Alu 1 292 -17 424 249 24 85 chr11 122634773 122634913 -28148640 + MIR SINE MIR 30 160 -102 413 63 0 16 chr11 122635501 122635564 -28147989 + Alu SINE Alu 245 306 -5 235 230 7 86 chr11 122635669 122635821 -28147732 + GA-rich Low_complexity Low_complexity 3 142 0 778 274 116 0 chr11 122639451 122639666 -28143887 + MIR SINE MIR 23 262 0 189 74 0 0 chr11 122641100 122641127 -28142426 + (CA)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr11 122641743 122641766 -28141787 + AT_rich Low_complexity Low_complexity 1 23 0 26 74 0 0 chr11 122642259 122642313 -28141240 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr11 122646701 122646722 -28136831 + AT_rich Low_complexity Low_complexity 1 21 0 878 144 8 0 chr11 122646723 122646855 -28136698 + AluSp SINE Alu 1 133 -180 225 0 0 0 chr11 122646855 122646880 -28136673 + (A)n Simple_repeat Simple_repeat 1 25 0 25 0 0 0 chr11 122646880 122646905 -28136648 + GC_rich Low_complexity Low_complexity 1 25 0 2105 91 3 0 chr11 122647061 122647348 -28136205 + L1PB1 LINE L1 5864 6151 0 237 33 0 0 chr11 122647438 122647468 -28136085 + (TG)n Simple_repeat Simple_repeat 2 31 0 528 202 59 8 chr11 122648350 122648469 -28135084 + MER5B DNA MER1_type 1 125 -53 688 183 92 92 chr11 122648469 122648709 -28134844 - L1MD3 LINE L1 0 7985 6120 250 237 0 17 chr11 122648713 122648772 -28134781 + MER5B DNA MER1_type 118 175 -3 365 143 39 26 chr11 122648775 122648852 -28134701 - MIR3 SINE MIR -48 160 83 3465 60 132 111 chr11 122649644 122649889 -28133664 + MER41B LTR ERV1 1 239 -396 539 166 7 110 chr11 122649889 122650034 -28133519 + FLAM_A SINE Alu 1 130 -3 3465 60 132 111 chr11 122650034 122650410 -28133143 + MER41B LTR ERV1 239 635 0 327 313 0 0 chr11 122651206 122651305 -28132248 + MIR SINE MIR 28 126 -136 554 313 62 9 chr11 122651705 122651916 -28131637 - MIR SINE MIR -15 247 26 194 250 150 25 chr11 122652272 122652352 -28131201 - L2 LINE L2 -9 3263 3174 555 205 16 8 chr11 122652706 122652833 -28130720 + MIR SINE MIR 75 202 -60 33 0 0 0 chr11 122652902 122652935 -28130618 + AT_rich Low_complexity Low_complexity 1 33 0 468 276 90 0 chr11 122653055 122653200 -28130353 - MER5A DNA MER1_type -6 183 26 390 241 52 38 chr11 122653475 122653638 -28129915 + MIR SINE MIR 44 208 -54 509 111 0 25 chr11 122653639 122653703 -28129850 + AluSc SINE Alu 216 280 -29 210 37 0 0 chr11 122653703 122653730 -28129823 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2288 113 3 3 chr11 122653737 122654046 -28129507 + AluSc SINE Alu 1 309 0 336 286 34 8 chr11 122654817 122654936 -28128617 + GA-rich Low_complexity Low_complexity 2 123 0 1062 175 76 91 chr11 122655133 122655506 -28128047 + MLT1A1 LTR MaLR 1 365 0 290 313 41 14 chr11 122655782 122655929 -28127624 + CT-rich Low_complexity Low_complexity 3 153 0 244 182 131 81 chr11 122656832 122656931 -28126622 + MIR SINE MIR 78 181 -81 246 310 86 9 chr11 122656970 122657086 -28126467 - MIR3 SINE MIR -72 136 12 407 339 18 12 chr11 122657595 122657760 -28125793 - MIR SINE MIR -73 189 24 282 259 89 18 chr11 122658311 122658423 -28125130 + MIR SINE MIR 68 187 -75 1310 194 0 4 chr11 122658750 122658987 -28124566 + MER46A DNA MER2_type 1 236 0 335 346 64 10 chr11 122659028 122659230 -28124323 - MIR SINE MIR -43 219 7 572 211 32 0 chr11 122660176 122660299 -28123254 - MIR SINE MIR -108 154 28 476 256 8 8 chr11 122661028 122661149 -28122404 + MIR SINE MIR 11 131 -131 270 160 27 13 chr11 122661168 122661243 -28122310 + CT-rich Low_complexity Low_complexity 5 80 0 200 317 50 20 chr11 122662170 122662271 -28121282 - MIR SINE MIR -101 161 58 320 292 39 19 chr11 122662730 122662884 -28120669 - MIR SINE MIR -15 247 91 217 272 37 0 chr11 122662929 122663010 -28120543 - L3b LINE CR1 -237 1346 1263 442 254 72 105 chr11 122663017 122663397 -28120156 + L1MC4a LINE L1 5545 5751 -370 589 301 47 17 chr11 122663691 122663927 -28119626 + MIR SINE MIR 12 254 -8 499 283 99 27 chr11 122665971 122666175 -28117378 - MIR SINE MIR -37 225 9 267 299 11 0 chr11 122666197 122666284 -28117269 + MIR SINE MIR 170 257 -5 1849 171 0 10 chr11 122667865 122668164 -28115389 - AluJb SINE Alu -16 296 1 433 274 91 11 chr11 122668320 122668495 -28115058 + MIR SINE MIR 4 192 -70 8234 231 81 35 chr11 122668591 122669357 -28114196 + L1ME1 LINE L1 2302 3031 -3135 923 236 79 0 chr11 122669357 122669560 -28113993 + MER20 DNA MER1_type 1 219 0 8234 231 81 35 chr11 122669560 122670712 -28112841 + L1ME1 LINE L1 3031 4129 -2037 1959 135 7 0 chr11 122670712 122671022 -28112531 + AluSp SINE Alu 1 312 0 8234 231 81 35 chr11 122671022 122671682 -28111871 + L1ME1 LINE L1 4129 4757 -1409 210 71 0 0 chr11 122671682 122671710 -28111843 + (CA)n Simple_repeat Simple_repeat 1 28 0 8234 231 81 35 chr11 122671710 122672820 -28110733 + L1ME1 LINE L1 4757 6165 -1 380 232 80 25 chr11 122672844 122673073 -28110480 + L1MC4 LINE L1 7821 7995 0 423 0 0 0 chr11 122673525 122673572 -28109981 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1976 103 0 63 chr11 122673574 122673874 -28109679 - AluSx SINE Alu -31 281 1 483 272 53 6 chr11 122675713 122675882 -28107671 + MIR SINE MIR 16 192 -70 842 218 17 6 chr11 122676882 122677056 -28106497 - MER5B DNA MER1_type -2 176 1 228 301 194 0 chr11 122677453 122677546 -28106007 + Charlie7 DNA MER1_type 10 120 -2492 532 222 19 0 chr11 122677682 122677790 -28105763 + MER81 DNA DNA 5 114 0 366 238 38 29 chr11 122677834 122677939 -28105614 + Charlie7 DNA MER1_type 212 317 -2295 241 206 79 16 chr11 122677939 122678002 -28105551 + Charlie7 DNA MER1_type 1434 1500 -1112 303 201 69 25 chr11 122678101 122678260 -28105293 + (TTAAA)n Simple_repeat Simple_repeat 4 169 0 2030 213 152 46 chr11 122678264 122679138 -28104415 + Charlie7 DNA MER1_type 1596 2562 -50 212 158 0 0 chr11 122679205 122679243 -28104310 + L2 LINE L2 3265 3302 -11 5530 126 18 15 chr11 122679243 122680134 -28103419 + L1MA7 LINE L1 5368 6261 -30 23 0 0 0 chr11 122680180 122680203 -28103350 + AT_rich Low_complexity Low_complexity 1 23 0 2361 102 3 0 chr11 122682520 122682825 -28100728 + AluSg SINE Alu 1 306 -4 732 52 0 0 chr11 122682830 122682927 -28100626 + (GGAA)n Simple_repeat Simple_repeat 4 100 0 234 289 0 0 chr11 122683744 122683796 -28099757 + polypurine Low_complexity Low_complexity 3 54 0 548 169 11 58 chr11 122683796 122683985 -28099568 + GA-rich Low_complexity Low_complexity 1 180 0 271 309 22 22 chr11 122684606 122684745 -28098808 + MIR SINE MIR 35 173 -89 277 259 0 12 chr11 122684768 122684849 -28098704 - HsTC2 DNA Tc2 -1813 85 6 328 294 0 10 chr11 122685479 122685581 -28097972 - MER5A DNA MER1_type -80 109 9 855 218 59 9 chr11 122686590 122686810 -28096743 - MIR SINE MIR -1 261 31 467 206 0 9 chr11 122688145 122688580 -28094973 + (CA)n Simple_repeat Simple_repeat 1 431 0 189 94 0 0 chr11 122688613 122688645 -28094908 + (CA)n Simple_repeat Simple_repeat 1 32 0 473 186 14 71 chr11 122689319 122689459 -28094094 + MIR SINE MIR 2 133 -129 206 365 28 9 chr11 122690461 122690568 -28092985 - MER5B DNA MER1_type -30 148 40 1752 139 4 4 chr11 122690568 122690826 -28092727 + AluSc SINE Alu 39 296 -13 291 286 11 11 chr11 122690996 122691087 -28092466 - L2 LINE L2 -52 3261 3171 810 288 40 4 chr11 122691224 122691450 -28092103 + MIR SINE MIR 29 262 0 353 268 134 24 chr11 122691598 122691725 -28091828 + MIR SINE MIR 121 261 -1 392 248 99 72 chr11 122691747 122691969 -28091584 - L3 LINE CR1 -310 1267 1040 3001 131 8 2 chr11 122692033 122692505 -28091048 - L1MA3 LINE L1 -1 6304 5830 1268 107 0 0 chr11 122695597 122695774 -28087779 + AluSq SINE Alu 125 301 -12 289 328 30 11 chr11 122697323 122697467 -28086086 - MIR SINE MIR -59 149 3 307 211 26 114 chr11 122697924 122698038 -28085515 - L2 LINE L2 -76 3237 3134 715 281 91 5 chr11 122698573 122698788 -28084765 + MIR SINE MIR 16 249 -13 410 330 149 14 chr11 122701611 122701832 -28081721 - MIR SINE MIR 0 262 12 339 78 0 0 chr11 122701916 122701967 -28081586 + (CA)n Simple_repeat Simple_repeat 2 52 0 207 0 0 0 chr11 122701966 122701989 -28081564 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 2281 93 6 0 chr11 122702105 122702416 -28081137 - AluSq SINE Alu 0 313 1 234 347 33 67 chr11 122702495 122702645 -28080908 - L2 LINE L2 -13 3259 3115 349 273 88 62 chr11 122703133 122703217 -28080336 + MIR SINE MIR 62 142 -120 2376 96 76 17 chr11 122703217 122703561 -28079992 - THE1B LTR MaLR 0 364 1 349 273 88 62 chr11 122703561 122703670 -28079883 + MIR SINE MIR 142 260 -2 264 233 0 0 chr11 122703700 122703773 -28079780 + (CAT)n Simple_repeat Simple_repeat 1 73 0 234 0 0 0 chr11 122704655 122704681 -28078872 + (TTA)n Simple_repeat Simple_repeat 1 26 0 548 227 17 17 chr11 122704930 122705049 -28078504 - L2 LINE L2 0 3313 3195 2476 102 23 6 chr11 122705199 122705542 -28078011 - THE1B LTR MaLR -15 349 1 29 28 0 0 chr11 122705543 122705579 -28077974 + AT_rich Low_complexity Low_complexity 1 36 0 213 39 0 0 chr11 122705655 122705681 -28077872 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 259 241 276 0 chr11 122705681 122705768 -28077785 - L2 LINE L2 -13 3259 3149 384 213 11 21 chr11 122705938 122706032 -28077521 - L1MD3 LINE L1 0 7995 7903 2340 65 0 10 chr11 122706032 122706342 -28077211 - AluY SINE Alu -4 307 1 1009 205 62 0 chr11 122706400 122706610 -28076943 - MER58A DNA MER1_type 0 224 2 329 297 129 19 chr11 122706787 122706996 -28076557 - MIR SINE MIR -28 234 3 482 252 8 25 chr11 122708157 122708276 -28075277 + MIR SINE MIR 92 208 -54 676 259 117 82 chr11 122708283 122708769 -28074784 + MLT1J LTR MaLR 9 511 0 523 239 148 0 chr11 122708916 122709071 -28074482 + MER5B DNA MER1_type 1 178 0 201 286 18 0 chr11 122709255 122709311 -28074242 - MIR SINE MIR -85 123 67 1860 152 7 0 chr11 122709478 122709768 -28073785 + AluSx SINE Alu 1 292 -20 198 0 0 0 chr11 122710454 122710476 -28073077 + (T)n Simple_repeat Simple_repeat 1 22 0 1170 116 11 0 chr11 122710595 122710785 -28072768 + AluSq SINE Alu 118 309 -4 189 0 0 0 chr11 122711785 122711806 -28071747 + (G)n Simple_repeat Simple_repeat 1 21 0 270 0 0 0 chr11 122711863 122711893 -28071660 + (A)n Simple_repeat Simple_repeat 1 30 0 1015 217 106 0 chr11 122712168 122712403 -28071150 + MIR SINE MIR 3 262 0 267 355 24 16 chr11 122712467 122712591 -28070962 - MIR SINE MIR -52 210 86 470 149 234 28 chr11 122712624 122712731 -28070822 - FLAM_A SINE Alu -8 134 6 203 252 189 47 chr11 122713224 122713351 -28070202 - L2 LINE L2 -7 3265 3121 811 233 79 9 chr11 122713359 122713574 -28069979 + MIR SINE MIR 33 262 0 208 125 42 42 chr11 122713636 122713732 -28069821 + (TA)n Simple_repeat Simple_repeat 1 96 0 2052 96 10 3 chr11 122713846 122714138 -28069415 + AluSx SINE Alu 1 294 -18 416 286 121 6 chr11 122714177 122714359 -28069194 - MIR SINE MIR -57 205 3 223 282 235 0 chr11 122715215 122715300 -28068253 - L2 LINE L2 0 3272 3168 2240 160 40 37 chr11 122715696 122716152 -28067401 + MSTB2 LTR MaLR 1 457 0 217 346 0 12 chr11 122716324 122716405 -28067148 - MIR SINE MIR -112 150 71 500 271 9 0 chr11 122716512 122716619 -28066934 + MIR SINE MIR 38 145 -63 838 162 0 7 chr11 122716674 122716810 -28066743 - AluJo SINE Alu -125 187 53 416 270 125 13 chr11 122717006 122717158 -28066395 + MIR3 SINE MIR 19 187 -21 * 2112 269 67 44 chr11 122717156 122718027 -28065526 + L2 LINE L2 2255 3144 -169 417 266 266 0 chr11 122718042 122718181 -28065372 - MER5A DNA MER1_type -7 182 7 410 256 18 92 chr11 122718196 122718360 -28065193 + L2 LINE L2 3158 3309 -4 961 255 0 0 chr11 122719013 122719213 -28064340 - MIR SINE MIR 0 262 63 520 191 214 0 chr11 122719711 122719860 -28063693 + MER5A DNA MER1_type 4 189 0 406 269 225 3 chr11 122719913 122720088 -28063465 - MIR SINE MIR -36 226 28 1634 177 7 16 chr11 122722216 122722521 -28061032 + AluJo SINE Alu 1 302 -10 309 155 0 0 chr11 122722747 122722805 -28060748 + CT-rich Low_complexity Low_complexity 2 59 0 449 316 130 5 chr11 122723106 122723321 -28060232 + MIR SINE MIR 21 262 0 200 246 116 14 chr11 122724681 122724750 -28058803 - MIR3 SINE MIR -4 204 129 * 358 297 54 18 chr11 122724726 122724837 -28058716 - L2 LINE L2 -3 3269 3155 210 178 44 0 chr11 122724972 122725017 -28058536 + L2 LINE L2 3133 3179 -93 2308 139 18 33 chr11 122725296 122725692 -28057861 - MLT1B LTR MaLR 0 390 1 865 272 116 42 chr11 122727178 122727732 -28055821 - L2 LINE L2 0 3313 2716 2051 110 0 3 chr11 122728090 122728381 -28055172 + AluSg1 SINE Alu 1 290 -19 200 200 100 0 chr11 122730191 122730241 -28053312 - MIR SINE MIR -114 148 94 1587 129 0 4 chr11 122731133 122731365 -28052188 + AluSq SINE Alu 1 231 -82 288 344 62 12 chr11 122731518 122731678 -28051875 - L2 LINE L2 -217 3055 2888 269 211 0 143 chr11 122731725 122731858 -28051695 - L2 LINE L2 -21 3251 3138 199 343 98 61 chr11 122731926 122732207 -28051346 - L2 LINE L2 -556 2758 2456 1792 164 3 0 chr11 122732207 122732511 -28051042 + AluJb SINE Alu 1 305 -7 199 343 98 61 chr11 122732511 122732637 -28050916 - L2 LINE L2 -858 2456 2336 637 196 64 95 chr11 122735472 122735652 -28047901 - L1MA8 LINE L1 0 6180 6006 506 193 44 44 chr11 122735675 122735810 -28047743 - LTR41 LTR ERVL -637 136 2 317 255 64 32 chr11 122735811 122735905 -28047648 - MIR SINE MIR -113 149 53 2900 115 8 29 chr11 122736534 122737134 -28046419 - MER4A LTR ERV1 0 664 7 519 250 43 9 chr11 122737186 122737302 -28046251 - MIR SINE MIR -127 135 16 880 239 54 22 chr11 122737729 122737951 -28045602 - MIR SINE MIR 0 262 34 187 282 0 0 chr11 122738214 122738253 -28045300 + MIR3 SINE MIR 144 182 -26 350 229 143 0 chr11 122738549 122738654 -28044899 - L2 LINE L2 -1 3312 3193 2103 123 3 0 chr11 122738819 122739121 -28044432 + AluSq SINE Alu 1 303 -10 912 140 0 0 chr11 122739313 122739449 -28044104 - FLAM_C SINE Alu -7 136 1 416 303 0 37 chr11 122739624 122739733 -28043820 - MIR3 SINE MIR -9 199 95 7116 52 12 2 chr11 122739733 122741006 -28042547 + L1PA6 LINE L1 4863 6143 -11 39 0 0 0 chr11 122741006 122741045 -28042508 + AT_rich Low_complexity Low_complexity 1 39 0 23 54 0 0 chr11 122741139 122741176 -28042377 + AT_rich Low_complexity Low_complexity 1 37 0 230 302 191 8 chr11 122742524 122742650 -28040903 - MIR SINE MIR -78 184 36 2268 106 0 31 chr11 122742792 122743113 -28040440 + AluSq SINE Alu 1 311 -2 1579 236 156 0 chr11 122746389 122746779 -28036774 - MLT1H1 LTR MaLR -6 549 99 2365 108 0 0 chr11 122748231 122748536 -28035017 + AluSx SINE Alu 1 305 -7 4438 155 70 84 chr11 122748558 122748676 -28034877 + L1MC3 LINE L1 6701 6819 -966 2025 126 11 3 chr11 122748676 122748961 -28034592 + AluSx SINE Alu 4 290 -22 315 0 0 0 chr11 122748966 122749001 -28034552 + (CA)n Simple_repeat Simple_repeat 2 36 0 4438 155 70 84 chr11 122749001 122749053 -28034500 + L1MC3 LINE L1 6823 6874 -911 216 0 0 0 chr11 122749053 122749077 -28034476 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4438 155 70 84 chr11 122749077 122749365 -28034188 + L1MC3 LINE L1 6874 7165 -620 272 258 0 0 chr11 122749365 122749427 -28034126 + MLT1F1 LTR MaLR 64 125 -442 4438 155 70 84 chr11 122749427 122750000 -28033553 + L1MC3 LINE L1 7165 7785 0 263 111 0 19 chr11 122750637 122750691 -28032862 + (TG)n Simple_repeat Simple_repeat 1 53 0 350 145 0 14 chr11 122750706 122750775 -28032778 + (GGGGA)n Simple_repeat Simple_repeat 4 71 0 1946 68 4 8 chr11 122750822 122751087 -28032466 + L1MA1 LINE L1 5915 6178 -124 321 43 0 0 chr11 122751121 122751168 -28032385 + L1MA3 LINE L1 6259 6305 0 428 223 74 0 chr11 122751599 122751720 -28031833 + MIR3 SINE MIR 50 179 -29 403 304 0 9 chr11 122752228 122752340 -28031213 + MIR3 SINE MIR 83 193 -15 429 351 6 12 chr11 122752647 122752815 -28030738 + MIR SINE MIR 22 188 -74 343 191 64 73 chr11 122752850 122752960 -28030593 + MER5A DNA MER1_type 4 112 -77 279 0 0 0 chr11 122753079 122753110 -28030443 + (CA)n Simple_repeat Simple_repeat 2 32 0 639 215 15 0 chr11 122753302 122753437 -28030116 + MER33 DNA MER1_type 1 137 -187 248 343 30 10 chr11 122753760 122753859 -28029694 + MIR3 SINE MIR 105 205 -3 846 137 143 0 chr11 122755248 122755409 -28028144 - MER53 DNA DNA 0 189 6 2408 81 7 0 chr11 122757938 122758233 -28025320 + AluSp SINE Alu 1 297 -16 492 235 0 0 chr11 122760474 122760572 -28022981 - MER5A DNA MER1_type -83 106 9 205 261 161 31 chr11 122763070 122763231 -28020322 + MIR SINE MIR 53 234 -28 767 194 123 33 chr11 122763381 122763592 -28019961 + MLT1H LTR MaLR 3 232 -317 257 190 80 109 chr11 122763729 122763866 -28019687 + MLT1G1 LTR MaLR 410 588 0 573 241 30 30 chr11 122764344 122764510 -28019043 + MLT1J LTR MaLR 1 166 -345 2278 99 7 0 chr11 122766488 122766780 -28016773 + AluSg SINE Alu 1 294 -16 637 290 69 4 chr11 122769002 122769247 -28014306 - MIR SINE MIR 0 262 2 2191 163 63 27 chr11 122769720 122770162 -28013391 - MLT1C LTR MaLR -9 458 1 309 214 57 79 chr11 122770353 122770493 -28013060 - L2 LINE L2 -212 3060 2924 29 28 0 0 chr11 122771856 122771892 -28011661 + AT_rich Low_complexity Low_complexity 1 36 0 180 286 119 0 chr11 122772271 122772355 -28011198 + MIR SINE MIR 168 261 -1 2366 85 3 0 chr11 122772782 122773075 -28010478 + AluSc SINE Alu 1 294 -15 504 292 31 45 chr11 122773315 122773569 -28009984 - MIR SINE MIR -1 261 17 229 155 0 35 chr11 122773576 122773634 -28009919 + (CA)n Simple_repeat Simple_repeat 1 56 0 21 0 0 0 chr11 122773951 122773972 -28009581 + AT_rich Low_complexity Low_complexity 1 21 0 1559 171 3 70 chr11 122774091 122774407 -28009146 - AluJo SINE Alu -17 295 1 776 343 31 37 chr11 122775679 122776221 -28007332 + L2 LINE L2 2226 2764 -550 352 339 83 71 chr11 122776296 122776550 -28007003 + L2 LINE L2 2930 3186 -86 292 98 24 0 chr11 122776582 122776623 -28006930 + MER75 DNA T2_type 469 510 -4 434 146 24 12 chr11 122776643 122776725 -28006828 + L2 LINE L2 3186 3268 -4 1882 159 0 29 chr11 122777278 122777587 -28005966 + AluJb SINE Alu 7 306 -6 215 329 52 32 chr11 122778657 122778812 -28004741 - L2 LINE L2 -290 2982 2825 1867 170 121 0 chr11 122778876 122779240 -28004313 + MER82 DNA MER2_type 1 408 -245 1073 220 29 65 chr11 122779361 122779524 -28004029 + MER82 DNA MER2_type 355 503 -150 1804 90 37 4 chr11 122779524 122779769 -28003784 - AluSp SINE Alu -21 292 40 1073 220 29 65 chr11 122779769 122779914 -28003639 + MER82 DNA MER2_type 503 652 -1 397 119 0 34 chr11 122780608 122780667 -28002886 - MER66B LTR ERV1 -142 344 288 292 338 0 22 chr11 122781400 122781539 -28002014 - L2 LINE L2 -268 3004 2869 1336 110 30 0 chr11 122781574 122781774 -28001779 - Tigger7 DNA MER2_type -30 2461 2256 1330 196 60 0 chr11 122781773 122782008 -28001545 - Tigger7 DNA MER2_type -484 249 1 * 210 227 0 0 chr11 122783256 122783300 -28000253 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 478 221 32 57 chr11 122783421 122783579 -27999974 - MIR SINE MIR -80 182 29 203 222 222 87 chr11 122783688 122783814 -27999739 - L2 LINE L2 -177 3095 2953 454 270 167 5 chr11 122783991 122784195 -27999358 + MIR SINE MIR 25 261 -1 24 0 0 0 chr11 122784931 122784955 -27998598 + AT_rich Low_complexity Low_complexity 1 24 0 392 252 153 9 chr11 122784967 122785078 -27998475 + L2 LINE L2 3138 3264 -8 1622 184 0 27 chr11 122785885 122786184 -27997369 - AluJo SINE Alu -21 291 1 22 70 0 0 chr11 122786600 122786643 -27996910 + AT_rich Low_complexity Low_complexity 1 43 0 405 200 86 9 chr11 122791384 122791489 -27992064 + L2 LINE L2 3155 3267 -5 687 276 29 45 chr11 122791724 122791967 -27991586 + MIR SINE MIR 23 261 -1 180 0 0 0 chr11 122793660 122793680 -27989873 + (TA)n Simple_repeat Simple_repeat 2 21 0 416 313 47 36 chr11 122793724 122794103 -27989450 - HERV16 LTR ERVL 0 5344 4787 562 354 46 18 chr11 122794120 122794448 -27989105 - HERV16 LTR ERVL -684 5080 4744 4823 295 46 32 chr11 122794465 122796984 -27986569 - HERV16 LTR ERVL -1386 4378 1736 1455 258 74 39 chr11 122799568 122800030 -27983523 - LTR33 LTR ERVL 0 521 44 203 266 165 0 chr11 122800251 122800330 -27983223 + L2 LINE L2 2945 3036 -236 1108 239 33 7 chr11 122800333 122800609 -27982944 + L1MC4 LINE L1 7632 7914 -128 195 184 0 0 chr11 122800609 122800647 -27982906 + (TATG)n Simple_repeat Simple_repeat 1 38 0 399 152 125 18 chr11 122800704 122800816 -27982737 + L1MC4 LINE L1 7919 8042 0 193 406 67 18 chr11 122800828 122800993 -27982560 + L2 LINE L2 3029 3201 -71 268 254 56 14 chr11 122801423 122801494 -27982059 + L2 LINE L2 3192 3265 -48 611 251 16 63 chr11 122801520 122801647 -27981906 + MIR SINE MIR 38 156 -106 1607 79 0 5 chr11 122801647 122801875 -27981678 + AluY SINE Alu 83 309 0 611 251 16 63 chr11 122801875 122801937 -27981616 + MIR SINE MIR 156 219 -43 2220 102 7 16 chr11 122801938 122802241 -27981312 + AluSx SINE Alu 3 302 -10 342 0 0 0 chr11 122802320 122802358 -27981195 + (CA)n Simple_repeat Simple_repeat 2 39 0 403 220 45 79 chr11 122802747 122802924 -27980629 + L1MC5 LINE L1 7754 7924 -37 251 315 14 0 chr11 122804409 122804482 -27979071 + MIR SINE MIR 81 154 -108 732 253 68 98 chr11 122804540 122804932 -27978621 - MER21B LTR ERV1 -143 788 379 455 247 65 74 chr11 122804916 122805219 -27978334 - MER21B LTR ERV1 -261 344 1 * 229 98 0 0 chr11 122806014 122806055 -27977498 - L1PB3 LINE L1 0 6154 6114 234 0 0 0 chr11 122806803 122806829 -27976724 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 250 253 189 0 chr11 122807005 122807100 -27976453 + MIR SINE MIR 150 262 0 1568 173 95 35 chr11 122807287 122807357 -27976196 - Charlie4a DNA MER1_type -1453 508 444 2248 96 6 22 chr11 122807357 122807388 -27976165 - AluSx SINE Alu -3 309 279 180 0 0 0 chr11 122807388 122807408 -27976145 + (TA)n Simple_repeat Simple_repeat 2 21 0 2248 96 6 22 chr11 122807408 122807690 -27975863 - AluSx SINE Alu -33 279 1 1568 173 95 35 chr11 122807690 122808019 -27975534 - Charlie4a DNA MER1_type -1517 444 85 1950 136 20 10 chr11 122808023 122808363 -27975190 - AluJb SINE Alu 0 312 1 214 227 23 0 chr11 122809275 122809319 -27974234 + L2 LINE L2 3211 3255 -17 1841 161 0 0 chr11 122809682 122809974 -27973579 + AluJo SINE Alu 1 292 -20 205 244 78 33 chr11 122810214 122810304 -27973249 - L3b LINE CR1 -329 1254 1161 240 311 101 25 chr11 122810615 122810734 -27972819 + L2 LINE L2 3144 3271 -1 2655 117 92 25 chr11 122811277 122811317 -27972236 + MSTC LTR MaLR 1 37 -391 1932 149 9 19 chr11 122811317 122811632 -27971921 + AluJo SINE Alu 1 312 0 2655 117 92 25 chr11 122811632 122811992 -27971561 + MSTC LTR MaLR 37 428 0 547 165 21 21 chr11 122812100 122812222 -27971331 - AluSg/x SINE Alu 0 310 189 2125 94 25 0 chr11 122812947 122813222 -27970331 + AluSc SINE Alu 1 282 -27 531 0 0 0 chr11 122813222 122813281 -27970272 + (CA)n Simple_repeat Simple_repeat 2 60 0 1363 127 54 0 chr11 122813299 122813504 -27970049 + MER1B DNA MER1_type 1 216 -81 2199 104 0 10 chr11 122813507 122813805 -27969748 + AluSx SINE Alu 13 307 -5 512 325 58 11 chr11 122814054 122814242 -27969311 + MIR SINE MIR 16 212 -50 2541 150 33 9 chr11 122814296 122814715 -27968838 + MLT1C LTR MaLR 37 465 -2 212 254 32 0 chr11 122814872 122814935 -27968618 + L3 LINE CR1 1295 1359 -218 378 222 14 0 chr11 122815631 122815703 -27967850 - MER2 DNA MER2_type 0 345 273 1442 142 28 82 chr11 122815809 122815967 -27967586 - MER2 DNA MER2_type -78 267 129 1774 160 3 0 chr11 122815967 122816261 -27967292 + AluJo SINE Alu 12 306 -6 1442 142 28 82 chr11 122816261 122816384 -27967169 - MER2 DNA MER2_type -216 129 1 410 232 33 61 chr11 122816505 122816686 -27966867 + L1MC5 LINE L1 7545 7720 -241 2156 126 0 0 chr11 122816708 122817001 -27966552 + AluSg SINE Alu 1 293 -17 403 65 0 143 chr11 122817037 122817076 -27966477 + MADE1 DNA Mariner 1 25 -55 2174 107 0 10 chr11 122817076 122817374 -27966179 - AluSx SINE Alu -17 295 1 403 65 0 143 chr11 122817374 122817411 -27966142 + MADE1 DNA Mariner 25 66 -14 301 252 44 119 chr11 122817417 122817576 -27965977 + L1MC5 LINE L1 7785 7931 -30 2350 98 0 3 chr11 122817676 122817981 -27965572 + AluSc SINE Alu 1 304 -5 201 279 151 12 chr11 122818116 122818202 -27965351 - MIR SINE MIR -14 248 151 26 50 0 0 chr11 122818337 122818377 -27965176 + AT_rich Low_complexity Low_complexity 1 40 0 206 341 175 24 chr11 122818420 122818546 -27965007 - L2 LINE L2 -3 3269 3125 252 258 0 16 chr11 122818828 122818890 -27964663 + L2 LINE L2 3232 3292 -21 317 298 160 18 chr11 122819838 122820063 -27963490 + L2 LINE L2 2808 3064 -208 439 252 37 19 chr11 122820322 122820429 -27963124 - L2 LINE L2 0 3272 3164 898 294 108 30 chr11 122820748 122821210 -27962343 + LTR33 LTR ERVL 24 521 0 2202 108 7 3 chr11 122821557 122821863 -27961690 + AluSq SINE Alu 3 309 -4 427 304 62 129 chr11 122821941 122822343 -27961210 + L2 LINE L2 2898 3272 0 248 238 40 30 chr11 122822990 122823091 -27960462 - L1MC5 LINE L1 -30 7931 7830 805 83 18 0 chr11 122823327 122823436 -27960117 - AluY SINE Alu -9 302 192 264 278 40 60 chr11 122824052 122824203 -27959350 - MER31-int LTR ERV1 -950 3986 3839 885 151 43 0 chr11 122824257 122824396 -27959157 - AluSp SINE Alu -32 281 137 2356 88 0 0 chr11 122825884 122826178 -27957375 + AluSg SINE Alu 1 294 -16 1889 152 58 31 chr11 122826442 122826800 -27956753 + THE1C LTR MaLR 1 386 -40 2132 136 3 0 chr11 122826800 122827110 -27956443 - AluJb SINE Alu -1 311 1 1889 152 58 31 chr11 122827110 122827153 -27956400 + THE1C LTR MaLR 386 426 0 730 176 32 8 chr11 122827457 122827582 -27955971 + FLAM_C SINE Alu 1 128 -5 1253 203 48 45 chr11 122827916 122828291 -27955262 - L1MC5 LINE L1 -132 7829 7454 473 161 43 0 chr11 122828316 122828409 -27955144 - L1MC5 LINE L1 -565 7396 7300 1590 270 93 19 chr11 122828451 122828999 -27954554 + MER77 LTR ERV1 53 612 -4 1426 189 121 83 chr11 122829035 122829555 -27953998 - L1MC5 LINE L1 -684 7277 6738 1149 274 81 35 chr11 122829555 122829866 -27953687 - LTR16A LTR ERVL 0 450 112 1463 145 23 0 chr11 122829866 122830080 -27953473 + MER20 DNA MER1_type 1 219 0 1149 274 81 35 chr11 122830080 122830198 -27953355 - LTR16A LTR ERVL -338 112 1 377 286 71 18 chr11 122830199 122830367 -27953186 - L1MC4a LINE L1 -1073 6735 6559 596 242 30 45 chr11 122830553 122830751 -27952802 - MIR3 SINE MIR -9 199 5 1797 129 23 50 chr11 122831200 122831503 -27952050 - AluJb SINE Alu -17 295 1 464 48 16 0 chr11 122831636 122831699 -27951854 + (CA)n Simple_repeat Simple_repeat 2 65 0 420 138 9 119 chr11 122832069 122832115 -27951438 - Zaphod DNA AcHobo -345 3686 3657 1902 156 3 10 chr11 122832115 122832410 -27951143 - AluJo SINE Alu -19 293 1 420 138 9 119 chr11 122832410 122832472 -27951081 - Zaphod DNA AcHobo -374 3657 3590 * 449 160 39 92 chr11 122832464 122832670 -27950883 - Zaphod DNA AcHobo -3040 991 797 236 79 32 79 chr11 122832694 122832757 -27950796 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 1982 105 0 0 chr11 122832759 122833016 -27950537 - AluSx SINE Alu -55 257 1 975 224 75 57 chr11 122833016 122833297 -27950256 - Zaphod DNA AcHobo -3741 290 5 233 156 109 31 chr11 122833470 122833534 -27950019 - THE1C LTR MaLR 0 375 307 * 301 119 0 0 chr11 122833522 122833564 -27949989 - THE1C LTR MaLR -181 194 153 844 84 0 0 chr11 122833564 122833671 -27949882 + AluSq/x SINE Alu 1 107 -206 955 112 0 15 chr11 122833671 122833843 -27949710 + AluSc SINE Alu 157 309 0 932 155 6 30 chr11 122833844 122834012 -27949541 - THE1C LTR MaLR -211 164 1 281 291 39 58 chr11 122834012 122834115 -27949438 - MIR SINE MIR -80 128 28 189 0 0 0 chr11 122835035 122835056 -27948497 + (TGGA)n Simple_repeat Simple_repeat 2 22 0 488 259 62 31 chr11 122835578 122835771 -27947782 + MIR SINE MIR 8 206 -56 1679 117 68 4 chr11 122835873 122836161 -27947392 - AluY SINE Alu 0 305 1 212 159 45 0 chr11 122836172 122836216 -27947337 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 745 248 75 58 chr11 122836367 122836587 -27946966 - L1M4 LINE L1 -978 5168 4953 1903 151 25 0 chr11 122836587 122836872 -27946681 - AluJb SINE Alu -20 292 1 745 248 75 58 chr11 122836872 122836969 -27946584 - L1M4 LINE L1 -1193 4953 4859 2318 125 0 0 chr11 122836969 122837281 -27946272 + AluSx SINE Alu 1 312 0 745 248 75 58 chr11 122837281 122837374 -27946179 - L1M4 LINE L1 -1287 4859 4750 205 288 0 15 chr11 122838055 122838121 -27945432 + (CA)n Simple_repeat Simple_repeat 2 66 0 2210 177 14 3 chr11 122838422 122838783 -27944770 + MLT1A1 LTR MaLR 1 365 0 336 309 0 0 chr11 122839464 122839545 -27944008 - L2 LINE L2 -9 3263 3183 1099 170 0 0 chr11 122839699 122839864 -27943689 - FRAM SINE Alu -12 164 1 427 295 187 58 chr11 122839884 122840202 -27943351 + L2 LINE L2 1323 1599 -1715 327 65 0 0 chr11 122840202 122840248 -27943305 + (CA)n Simple_repeat Simple_repeat 2 47 0 427 295 187 58 chr11 122840248 122840660 -27942893 + L2 LINE L2 1599 2181 -1133 1010 169 0 30 chr11 122840660 122840826 -27942727 - FRAM SINE Alu -4 162 2 427 295 187 58 chr11 122840826 122840951 -27942602 + L2 LINE L2 2181 2289 -1025 199 288 42 102 chr11 122841011 122841129 -27942424 + L3 LINE CR1 417 527 -1050 * 398 308 39 0 chr11 122841123 122841227 -27942326 + L2 LINE L2 3151 3258 -14 194 322 78 0 chr11 122841211 122841301 -27942252 + L2 LINE L2 2404 2500 -814 * 341 345 44 68 chr11 122841505 122841757 -27941796 + L2 LINE L2 2905 3150 -122 * 686 245 43 6 chr11 122841750 122841913 -27941640 - MIR SINE MIR -79 183 15 300 290 140 0 chr11 122841897 122841997 -27941556 + L2 LINE L2 3142 3255 -17 * 1886 130 31 10 chr11 122842219 122842512 -27941041 - AluSx SINE Alu -13 299 1 814 199 0 0 chr11 122842586 122842717 -27940836 + FLAM_A SINE Alu 3 133 0 190 276 82 51 chr11 122842749 122842847 -27940706 + L3 LINE CR1 556 656 -921 1332 290 175 26 chr11 122842903 122843458 -27940095 + L3 LINE CR1 653 1365 -212 387 41 0 0 chr11 122843458 122843507 -27940046 + (TG)n Simple_repeat Simple_repeat 2 50 0 1332 290 175 26 chr11 122843507 122843750 -27939803 + L3 LINE CR1 1365 1570 -7 23 33 0 0 chr11 122843775 122843805 -27939748 + AT_rich Low_complexity Low_complexity 1 30 0 1543 167 16 74 chr11 122843860 122843981 -27939572 - L1 LINE L1 -3125 3021 2895 726 212 25 0 chr11 122843981 122844099 -27939454 - FLAM_A SINE Alu -12 121 1 1543 167 16 74 chr11 122844099 122844342 -27939211 - L1 LINE L1 -3251 2895 2678 * 6129 148 28 23 chr11 122844339 122845463 -27938090 + L1MA10 LINE L1 4647 5788 -546 375 23 0 0 chr11 122845463 122845507 -27938046 + (CA)n Simple_repeat Simple_repeat 2 45 0 6129 148 28 23 chr11 122845507 122846056 -27937497 + L1MA10 LINE L1 5788 6333 -1 944 83 0 0 chr11 122846387 122846541 -27937012 - AluY SINE Alu 0 316 163 234 0 0 0 chr11 122847020 122847046 -27936507 + (TG)n Simple_repeat Simple_repeat 2 27 0 246 289 0 0 chr11 122847046 122847098 -27936455 + polypurine Low_complexity Low_complexity 2 53 0 2232 95 3 3 chr11 122847722 122848016 -27935537 + AluSc SINE Alu 1 294 -15 39 0 0 0 chr11 122848291 122848330 -27935223 + AT_rich Low_complexity Low_complexity 1 39 0 364 181 181 62 chr11 122848343 122848503 -27935050 - L1MC4 LINE L1 0 8042 7864 1073 112 31 0 chr11 122848510 122848671 -27934882 - AluSx SINE Alu -11 301 136 622 105 0 0 chr11 122848671 122848757 -27934796 - AluSx SINE Alu -227 86 1 3510 209 90 24 chr11 122848763 122849538 -27934015 - L1MC4 LINE L1 -188 7854 6993 2160 76 29 4 chr11 122849538 122849841 -27933712 - AluSx SINE Alu 0 310 1 3510 209 90 24 chr11 122849841 122850074 -27933479 - L1MC4 LINE L1 -1049 6993 6777 211 350 98 24 chr11 122850152 122850275 -27933278 + MIR3 SINE MIR 50 181 -27 245 167 17 100 chr11 122850407 122850467 -27933086 + MIR3 SINE MIR 151 205 -3 810 130 15 8 chr11 122850822 122850953 -27932600 + AluSg/x SINE Alu 168 299 -10 276 178 10 99 chr11 122850994 122851095 -27932458 + L1MC4 LINE L1 7925 8016 -26 2168 98 3 7 chr11 122851449 122851744 -27931809 - AluSc SINE Alu -15 294 1 2361 75 0 13 chr11 122853758 122854063 -27929490 - AluSq SINE Alu -12 301 1 461 262 150 32 chr11 122855111 122855512 -27928041 - L1ME4a LINE L1 -51 6070 5623 733 163 0 15 chr11 122855632 122855767 -27927786 + FLAM_C SINE Alu 1 133 0 22 0 0 0 chr11 122857058 122857080 -27926473 + AT_rich Low_complexity Low_complexity 1 22 0 988 258 130 31 chr11 122857192 122857715 -27925838 - L1ME4a LINE L1 -12 6109 5535 27 29 0 0 chr11 122857793 122857827 -27925726 + AT_rich Low_complexity Low_complexity 1 34 0 331 202 194 16 chr11 122857845 122857974 -27925579 - L1ME4a LINE L1 -687 5434 5283 1891 161 0 20 chr11 122858127 122858425 -27925128 - AluJb SINE Alu -20 292 1 2209 101 10 3 chr11 122859011 122859307 -27924246 + AluSx SINE Alu 1 298 -14 278 111 79 16 chr11 122859610 122859673 -27923880 - L1ME4a LINE L1 -2 6119 6053 1577 138 108 4 chr11 122859767 122859890 -27923663 + AluJb SINE Alu 1 110 -202 288 0 0 0 chr11 122859890 122859922 -27923631 + (TG)n Simple_repeat Simple_repeat 1 32 0 1577 138 108 4 chr11 122859922 122860066 -27923487 + AluJb SINE Alu 110 296 -16 513 324 63 11 chr11 122860070 122860357 -27923196 - L1ME LINE L1 -433 5688 5387 211 315 151 0 chr11 122860839 122860912 -27922641 + L2 LINE L2 3168 3251 -21 1183 212 136 31 chr11 122861232 122861623 -27921930 + MLT1J1 LTR MaLR 3 434 -12 291 28 0 0 chr11 122861719 122861755 -27921798 + (TA)n Simple_repeat Simple_repeat 2 37 0 34 55 0 0 chr11 122861853 122861908 -27921645 + AT_rich Low_complexity Low_complexity 1 55 0 2260 106 69 69 chr11 122862802 122862889 -27920664 - Tigger2a DNA MER2_type -2274 434 348 2168 111 7 7 chr11 122862889 122863187 -27920366 - AluSx SINE Alu -14 298 1 2260 106 69 69 chr11 122863187 122863533 -27920020 - Tigger2a DNA MER2_type -2359 349 1 2226 113 0 0 chr11 122863660 122863962 -27919591 + AluSx SINE Alu 1 302 -10 887 132 0 22 chr11 122863972 122864108 -27919445 + FLAM_C SINE Alu 1 133 0 244 188 0 0 chr11 122864864 122864912 -27918641 + L2 LINE L2 3265 3312 -1 1464 136 109 42 chr11 122865385 122865650 -27917903 + AluJb SINE Alu 14 296 -16 21 95 0 0 chr11 122865849 122865912 -27917641 + AT_rich Low_complexity Low_complexity 1 63 0 625 110 0 0 chr11 122865964 122866055 -27917498 - L1PB4 LINE L1 -8 6148 6058 551 246 94 26 chr11 122866255 122866446 -27917107 - MER63A DNA MER1_type -3 207 4 253 146 0 21 chr11 122866480 122866528 -27917025 + Charlie7 DNA MER1_type 55 101 -2511 225 141 42 14 chr11 122866525 122866596 -27916957 + Charlie7 DNA MER1_type 2452 2524 -88 * 189 74 0 0 chr11 122866628 122866655 -27916898 + (TG)n Simple_repeat Simple_repeat 2 28 0 583 195 102 8 chr11 122866738 122866856 -27916697 - FLAM_A SINE Alu -4 129 1 1515 134 86 8 chr11 122866863 122867162 -27916391 - Charlie3 DNA MER1_type -8 2702 1 834 201 50 0 chr11 122867326 122867485 -27916068 + FAM SINE Alu 1 167 -8 1764 164 0 27 chr11 122867541 122867840 -27915713 - AluJo SINE Alu -21 291 1 206 167 21 0 chr11 122868167 122868215 -27915338 + T-rich Low_complexity Low_complexity 5 53 0 1467 147 0 5 chr11 122868230 122868448 -27915105 - AluSx SINE Alu -95 217 1 651 265 142 0 chr11 122868793 122868955 -27914598 - MER5A DNA MER1_type -1 188 4 205 171 0 0 chr11 122869474 122869509 -27914044 + CT-rich Low_complexity Low_complexity 2 36 0 553 256 8 0 chr11 122869521 122869642 -27913911 - L2 LINE L2 -6 3307 3186 298 336 55 0 chr11 122869646 122869756 -27913797 + MIR3 SINE MIR 72 187 -21 21 0 0 0 chr11 122869756 122869777 -27913776 + AT_rich Low_complexity Low_complexity 1 21 0 1502 217 48 74 chr11 122869884 122870381 -27913172 - L1ME1 LINE L1 -5 6161 5678 737 162 70 38 chr11 122870382 122870435 -27913118 - L1MEc LINE L1 -4365 2031 1981 2069 121 7 10 chr11 122870435 122870732 -27912821 + AluSx SINE Alu 1 296 -16 737 162 70 38 chr11 122870732 122870863 -27912690 - L1MEc LINE L1 -4415 1981 1841 227 284 122 7 chr11 122870901 122871049 -27912504 - L1MEc LINE L1 -4519 1877 1713 216 0 0 0 chr11 122871051 122871075 -27912478 + (T)n Simple_repeat Simple_repeat 1 24 0 2583 58 3 0 chr11 122871256 122871565 -27911988 - AluY SINE Alu 0 311 2 4731 261 89 13 chr11 122871568 122873138 -27910415 - L1MEc LINE L1 -4669 1727 39 220 295 48 48 chr11 122873407 122873512 -27910041 + MIR SINE MIR 26 130 -132 1511 218 267 77 chr11 122873575 122874867 -27908686 - L2 LINE L2 0 3313 1705 1761 135 87 0 chr11 122876278 122876590 -27906963 + MER44D DNA MER2_type 1 609 0 619 221 15 110 chr11 122877285 122877429 -27906124 - HAL1 LINE L1 0 2507 2397 1705 145 52 4 chr11 122877429 122877738 -27905815 - AluJb SINE Alu 0 322 1 619 221 15 110 chr11 122877738 122877855 -27905698 - HAL1 LINE L1 -110 2397 2270 506 278 249 14 chr11 122878189 122878398 -27905155 - MIR SINE MIR 0 262 5 3523 204 43 28 chr11 122878635 122879491 -27904062 + L1ME2 LINE L1 5285 6153 -11 25 0 0 0 chr11 122880649 122880674 -27902879 + AT_rich Low_complexity Low_complexity 1 25 0 202 310 140 10 chr11 122881323 122881423 -27902130 + L2 LINE L2 2690 2802 -512 717 243 92 39 chr11 122881475 122881681 -27901872 - MIR SINE MIR -12 250 34 535 313 80 28 chr11 122883515 122883803 -27899750 + L2 LINE L2 2543 2845 -469 280 259 43 78 chr11 122884202 122884318 -27899235 + MIR SINE MIR 38 149 -59 180 0 0 0 chr11 122884465 122884485 -27899068 + (A)n Simple_repeat Simple_repeat 1 20 0 1668 121 76 0 chr11 122884753 122885043 -27898510 + AluSx SINE Alu 29 312 0 2283 112 0 6 chr11 122886118 122886432 -27897121 - AluSp SINE Alu -1 312 1 733 118 9 0 chr11 122886438 122886548 -27897005 - AluJb SINE Alu -3 309 199 571 136 0 93 chr11 122886621 122886739 -27896814 - AluJb SINE Alu -134 178 72 2110 97 24 0 chr11 122887345 122887633 -27895920 - AluSx SINE Alu -17 295 1 631 279 140 7 chr11 122887955 122888180 -27895373 + MIR SINE MIR 1 234 -28 937 301 79 9 chr11 122888181 122888613 -27894940 + L2 LINE L2 2503 2964 -350 2073 138 3 3 chr11 122888726 122889023 -27894530 - AluJb SINE Alu -15 297 1 1957 146 3 3 chr11 122889077 122889379 -27894174 - AluJb SINE Alu -10 302 1 779 175 0 0 chr11 122889381 122889507 -27894046 - AluJo/FLAM SINE Alu -186 126 1 626 236 59 25 chr11 122889510 122889713 -27893840 + L2 LINE L2 3104 3313 0 195 322 77 14 chr11 122889738 122889881 -27893672 + L2 LINE L2 2594 2745 -569 245 262 68 29 chr11 122889960 122890009 -27893544 + MER103 DNA DNA 17 63 -103 2542 102 14 6 chr11 122890009 122890370 -27893183 + THE1B LTR MaLR 1 364 0 245 262 68 29 chr11 122890370 122890423 -27893130 + MER103 DNA DNA 63 123 -43 679 206 8 8 chr11 122890976 122891133 -27892420 + FLAM_A SINE Alu 1 157 0 591 274 184 21 chr11 122891878 122892210 -27891343 + MLT1L LTR MaLR 214 599 -16 1937 164 7 0 chr11 122893207 122893512 -27890041 - AluJb SINE Alu -5 307 1 2179 92 3 11 chr11 122893547 122893910 -27889643 + AluSg SINE Alu 1 361 0 1920 138 3 0 chr11 122894284 122894566 -27888987 + AluJb SINE Alu 1 303 0 181 0 0 0 chr11 122894566 122894586 -27888967 + (CAAAA)n Simple_repeat Simple_repeat 2 170 0 191 347 14 28 chr11 122894798 122894870 -27888683 + L2 LINE L2 3003 3073 -199 1598 163 20 41 chr11 122895776 122896070 -27887483 - AluJb SINE Alu -22 290 3 368 335 73 56 chr11 122896075 122896254 -27887299 - L2 LINE L2 -2 3270 3089 2275 106 0 7 chr11 122896551 122896853 -27886700 - AluSx SINE Alu -12 300 1 30 27 0 0 chr11 122896863 122896900 -27886653 + AT_rich Low_complexity Low_complexity 1 37 0 592 267 27 27 chr11 122898862 122899049 -27884504 - MER5A DNA MER1_type 0 189 3 591 273 54 54 chr11 122899053 122899295 -27884258 + MIR SINE MIR 11 252 -10 222 118 0 0 chr11 122899797 122899831 -27883722 + (TATG)n Simple_repeat Simple_repeat 3 36 0 240 235 0 0 chr11 122900186 122900237 -27883316 + L2 LINE L2 3263 3313 0 2951 86 33 2 chr11 122900282 122900701 -27882852 - L1PA10 LINE L1 -14 6154 5723 22 0 0 0 chr11 122902083 122902105 -27881448 + AT_rich Low_complexity Low_complexity 1 22 0 268 236 50 85 chr11 122903147 122903346 -27880207 - L1ME4a LINE L1 -2 6119 5928 1857 145 83 0 chr11 122903391 122903728 -27879825 + MLT1A1 LTR MaLR 1 365 0 21 71 0 0 chr11 122903829 122903871 -27879682 + AT_rich Low_complexity Low_complexity 1 42 0 2350 68 0 14 chr11 122904084 122904380 -27879173 - AluY SINE Alu -9 302 11 533 159 11 0 chr11 122904391 122904479 -27879074 - AluJb SINE Alu -10 302 214 380 147 0 15 chr11 122904480 122904548 -27879005 - AluJb SINE Alu -151 151 85 805 290 36 7 chr11 122904654 122904933 -27878620 + L1ME4a LINE L1 5616 5902 -219 2251 197 6 82 chr11 122904939 122905503 -27878050 + L1ME1 LINE L1 5585 6190 24 180 0 0 0 chr11 122905503 122905523 -27878030 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2129 108 4 0 chr11 122905527 122905804 -27877749 - AluSq SINE Alu -35 278 1 2251 197 6 82 chr11 122905804 122905858 -27877695 + L1ME1 LINE L1 6105 6161 -5 954 232 112 104 chr11 122905931 122906145 -27877408 - L1ME3A LINE L1 -2 6160 5949 1929 128 52 0 chr11 122906145 122906433 -27877120 - AluSp SINE Alu -10 303 1 954 232 112 104 chr11 122906433 122906842 -27876711 - L1ME3A LINE L1 -213 5949 5506 426 284 25 71 chr11 122906847 122907044 -27876509 + L2 LINE L2 3118 3305 -8 1959 116 16 16 chr11 122907654 122907964 -27875589 - AluSg SINE Alu 0 310 1 1093 176 0 6 chr11 122907964 122908138 -27875415 - AluJb SINE Alu -6 306 132 2061 100 0 7 chr11 122908171 122908440 -27875113 - AluSx SINE Alu -45 267 1 1415 84 39 5 chr11 122908492 122908695 -27874858 - L1PA8 LINE L1 -4 6168 5959 21 0 0 0 chr11 122908695 122908716 -27874837 + AT_rich Low_complexity Low_complexity 1 21 0 404 353 66 39 chr11 122908743 122909029 -27874524 - L2 LINE L2 -21 3251 2958 2812 219 46 69 chr11 122909044 122909853 -27873700 + MER21B LTR ERV1 14 803 -60 446 231 15 69 chr11 122910027 122910157 -27873396 - MIR SINE MIR -66 142 20 1909 60 0 0 chr11 122911014 122911246 -27872307 + AluY SINE Alu 80 311 0 220 247 25 49 chr11 122911793 122911874 -27871679 - L2 LINE L2 -216 3056 2978 2468 77 0 3 chr11 122913421 122913731 -27869822 + AluSc SINE Alu 1 309 0 2181 114 0 19 chr11 122913906 122914222 -27869331 - AluSq SINE Alu -3 310 1 32 26 0 0 chr11 122914851 122914890 -27868663 + AT_rich Low_complexity Low_complexity 1 39 0 216 154 0 0 chr11 122916219 122916271 -27867282 + A-rich Low_complexity Low_complexity 1 52 0 5756 174 17 14 chr11 122917014 122919047 -27864506 - L1PB4 LINE L1 -18 6138 4104 225 401 76 17 chr11 122920242 122920479 -27863074 + L2 LINE L2 2248 2498 -816 227 333 117 33 chr11 122920502 122920622 -27862931 + L2 LINE L2 3140 3269 -3 778 208 16 71 chr11 122921259 122921358 -27862195 + MER5B DNA MER1_type 2 88 -90 884 120 0 30 chr11 122921358 122921491 -27862062 + FLAM_C SINE Alu 1 129 -4 778 208 16 71 chr11 122921491 122921574 -27861979 + MER5B DNA MER1_type 88 174 -4 203 156 0 44 chr11 122921720 122921765 -27861788 + (TTAAA)n Simple_repeat Simple_repeat 5 47 0 1319 116 75 4 chr11 122921823 122922064 -27861489 - L1MA4 LINE L1 -11 6289 6032 250 159 143 0 chr11 122922068 122922131 -27861422 - L1MA4 LINE L1 -209 6091 6020 1527 173 23 33 chr11 122922242 122922543 -27861010 - AluJo SINE Alu -14 298 1 414 328 148 6 chr11 122922550 122922733 -27860820 - MIR SINE MIR -50 212 4 1020 324 82 17 chr11 122922784 122923318 -27860235 + L3 LINE CR1 929 1497 -80 465 308 8 15 chr11 122923335 122923465 -27860088 - MER5A DNA MER1_type -2 187 59 2340 102 0 0 chr11 122923466 122923770 -27859783 - AluSx SINE Alu -8 304 1 348 193 259 22 chr11 122926888 122927023 -27856530 + MER112 DNA MER1_type 94 260 0 449 344 21 0 chr11 122927218 122927407 -27856146 - L1ME LINE L1 -451 5670 5478 847 154 124 6 chr11 122927651 122927820 -27855733 - MER6B DNA MER2_type -19 191 3 232 321 62 12 chr11 122927915 122927996 -27855557 + MER5A DNA MER1_type 7 91 -98 845 118 8 8 chr11 122928858 122928985 -27854568 - FLAM_C SINE Alu -16 127 1 197 359 19 9 chr11 122930215 122930321 -27853232 + L2 LINE L2 2554 2660 -654 189 0 0 0 chr11 122930458 122930479 -27853074 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1991 106 0 0 chr11 122930481 122930745 -27852808 - AluSx SINE Alu -27 285 22 213 376 26 0 chr11 122930763 122930880 -27852673 + L2 LINE L2 2950 3069 -203 293 311 40 60 chr11 122931427 122931578 -27851975 - MER117 DNA MER1_type -38 159 12 1935 125 47 3 chr11 122931867 122932164 -27851389 - AluJo SINE Alu -2 310 1 4735 173 66 8 chr11 122932169 122933159 -27850394 - L1MD1 LINE L1 0 6636 5591 14729 160 41 52 chr11 122933173 122933331 -27850222 - L1MA2 LINE L1 0 7723 7565 2062 110 29 32 chr11 122933331 122933640 -27849913 - AluSq SINE Alu -5 308 1 14729 160 41 52 chr11 122933640 122934468 -27849085 - L1MA2 LINE L1 -158 7565 6730 2109 121 10 0 chr11 122934468 122934766 -27848787 - AluSp SINE Alu -12 301 1 14729 160 41 52 chr11 122934766 122936266 -27847287 - L1MA2 LINE L1 -993 6730 5216 4016 82 11 2 chr11 122936266 122936812 -27846741 + L1PA10 LINE L1 5613 6163 -5 14729 160 41 52 chr11 122936812 122937177 -27846376 - L1MA2 LINE L1 -2507 5216 4849 1644 160 7 11 chr11 122937177 122937458 -27846095 - AluJb SINE Alu -14 298 19 14729 160 41 52 chr11 122937458 122940525 -27843028 - L1MA2 LINE L1 -2874 4849 1846 558 167 46 0 chr11 122940528 122940636 -27842917 - L1MA2 LINE L1 -7437 128 16 9811 221 68 30 chr11 122940640 122944183 -27839370 - L1MD1 LINE L1 -941 5599 1784 722 169 0 8 chr11 122944183 122944301 -27839252 - FLAM_C SINE Alu -15 118 2 9811 221 68 30 chr11 122944301 122946139 -27837414 - L1MD1 LINE L1 -4756 1784 17 225 0 0 0 chr11 122947469 122947494 -27836059 + (TG)n Simple_repeat Simple_repeat 2 26 0 2402 120 19 25 chr11 122947521 122947887 -27835666 + THE1B LTR MaLR 1 364 0 2489 244 98 14 chr11 122948611 122949442 -27834111 + L1ME3A LINE L1 5270 6169 -1 263 122 162 27 chr11 122949908 122949982 -27833571 - L1ME LINE L1 -679 5485 5402 429 258 42 84 chr11 122950491 122950704 -27832849 + MIR SINE MIR 58 261 -1 684 247 120 14 chr11 122950774 122951065 -27832488 - L2 LINE L2 -1 3312 2991 1068 186 35 10 chr11 122951078 122951277 -27832276 - MER20 DNA MER1_type -15 204 1 2804 234 141 9 chr11 122951282 122952214 -27831339 - L2 LINE L2 -337 2977 1923 293 279 106 33 chr11 122952358 122952518 -27831035 + MIR SINE MIR 36 206 -56 22 56 0 0 chr11 122952626 122952662 -27830891 + AT_rich Low_complexity Low_complexity 1 36 0 2017 129 0 39 chr11 122952685 122952994 -27830559 - AluJo SINE Alu -14 298 2 1548 188 45 7 chr11 122953245 122953533 -27830020 + AluJb SINE Alu 1 299 -13 339 283 145 6 chr11 122954738 122954904 -27828649 - MER5A DNA MER1_type 0 189 1 672 267 86 5 chr11 122955106 122955316 -27828237 + MIR SINE MIR 4 230 -32 217 321 48 0 chr11 122955342 122955426 -27828127 + MIR SINE MIR 123 210 -52 674 235 39 10 chr11 122956321 122956525 -27827028 + MIR SINE MIR 36 245 -17 302 67 22 0 chr11 122956992 122957037 -27826516 + (TCCA)n Simple_repeat Simple_repeat 2 47 0 284 250 136 0 chr11 122957170 122957258 -27826295 + MIR SINE MIR 159 258 -4 283 273 122 13 chr11 122957396 122957557 -27825996 + MIR SINE MIR 30 206 -56 445 161 0 49 chr11 122957709 122957790 -27825763 - MER58 DNA MER1_type -2 2418 2342 238 91 0 0 chr11 122957782 122957815 -27825738 - MER58 DNA MER1_type -244 2176 2144 * 771 266 26 13 chr11 122957978 122958207 -27825346 + MIR SINE MIR 17 248 -14 533 180 8 66 chr11 122958211 122958333 -27825220 - MER58 DNA MER1_type -217 124 10 217 218 0 36 chr11 122958564 122958619 -27824934 + T-rich Low_complexity Low_complexity 5 57 0 2039 192 68 75 chr11 122959161 122959331 -27824222 + MLT1F1 LTR MaLR 1 171 -396 2242 100 0 7 chr11 122959331 122959622 -27823931 + AluSx SINE Alu 1 289 -23 2039 192 68 75 chr11 122959622 122959997 -27823556 + MLT1F1 LTR MaLR 171 567 0 1724 112 32 0 chr11 122961903 122962153 -27821400 - AluSq SINE Alu -17 296 39 327 273 10 0 chr11 122962509 122962608 -27820945 + L2 LINE L2 2607 2706 -608 219 69 0 0 chr11 122963210 122963239 -27820314 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2188 126 7 0 chr11 122964377 122964670 -27818883 - AluSx SINE Alu -17 295 1 323 248 8 68 chr11 122964671 122964804 -27818749 - MIR SINE MIR -100 162 38 206 224 35 0 chr11 122965056 122965114 -27818439 + MIR SINE MIR 92 151 -111 203 86 0 29 chr11 122965894 122965929 -27817624 + (AGGGGG)n Simple_repeat Simple_repeat 3 36 0 2954 84 5 2 chr11 122968807 122969221 -27814332 - L1P5 LINE L1 -400 5751 5337 14013 183 27 8 chr11 122969222 122971535 -27812018 - L1PBa LINE L1 -1066 5796 3408 3964 28 0 4 chr11 122971535 122971989 -27811564 + L1PA5 LINE L1 5698 6154 0 14013 183 27 8 chr11 122971989 122972846 -27810707 - L1PBa LINE L1 -3454 3408 2568 192 77 0 0 chr11 122972854 122972880 -27810673 + (CA)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr11 122973699 122973720 -27809833 + AT_rich Low_complexity Low_complexity 1 21 0 373 286 89 24 chr11 122974072 122974240 -27809313 + MIR SINE MIR 84 262 0 2218 96 0 0 chr11 122974347 122974627 -27808926 + AluSx SINE Alu 1 280 -32 297 109 0 0 chr11 122974629 122974675 -27808878 + (CA)n Simple_repeat Simple_repeat 2 47 0 255 206 16 32 chr11 122974693 122974756 -27808797 + MER5A DNA MER1_type 40 101 -88 253 304 184 6 chr11 122975805 122975973 -27807580 + MIR SINE MIR 53 250 -12 1096 138 0 0 chr11 122976659 122976818 -27806735 - AluSg/x SINE Alu -33 279 121 207 0 0 0 chr11 122976818 122976841 -27806712 + (T)n Simple_repeat Simple_repeat 1 23 0 2411 93 6 0 chr11 122977011 122977322 -27806231 - AluSq SINE Alu 0 313 1 205 345 42 42 chr11 122977401 122977520 -27806033 - L2 LINE L2 -13 3259 3141 297 267 107 47 chr11 122978053 122978123 -27805430 + MIR SINE MIR 77 141 -121 2371 96 76 17 chr11 122978123 122978467 -27805086 - THE1B LTR MaLR 0 364 1 297 267 107 47 chr11 122978467 122978546 -27805007 + MIR SINE MIR 141 235 -27 264 233 0 0 chr11 122978606 122978679 -27804874 + (CACCAT)n Simple_repeat Simple_repeat 1 73 0 234 0 0 0 chr11 122979561 122979587 -27803966 + (TTA)n Simple_repeat Simple_repeat 1 26 0 498 227 17 17 chr11 122979836 122979955 -27803598 - L2 LINE L2 0 3313 3195 2467 102 23 6 chr11 122980105 122980448 -27803105 - THE1B LTR MaLR -15 349 1 29 28 0 0 chr11 122980449 122980485 -27803068 + AT_rich Low_complexity Low_complexity 1 36 0 213 39 0 0 chr11 122980561 122980587 -27802966 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 227 241 276 0 chr11 122980587 122980674 -27802879 - L2 LINE L2 -13 3259 3149 2654 199 25 19 chr11 122980844 122980938 -27802615 - L1MD3 LINE L1 0 7995 7903 2397 72 10 0 chr11 122980938 122981242 -27802311 - AluY SINE Alu -4 307 1 2654 199 25 19 chr11 122981242 122981736 -27801817 - L1MD3 LINE L1 -92 7903 7403 311 215 76 13 chr11 122981737 122981816 -27801737 - MLT1F1 LTR MaLR -443 124 41 461 271 71 0 chr11 122982179 122982319 -27801234 - MIR3 SINE MIR -1 207 58 196 338 0 14 chr11 122983547 122983621 -27799932 - MER5B DNA MER1_type -3 175 103 526 160 32 80 chr11 122983727 122983785 -27799768 + MER5A DNA MER1_type 15 65 -124 1606 70 0 5 chr11 122983785 122983985 -27799568 + AluY SINE Alu 105 303 -8 526 160 32 80 chr11 122983985 122984051 -27799502 + MER5A DNA MER1_type 65 133 -56 456 315 54 75 chr11 122984668 122985283 -27798270 - L2 LINE L2 -44 3228 2625 2230 129 33 33 chr11 122987807 122988171 -27795382 - THE1B LTR MaLR 0 364 1 453 303 52 9 chr11 122988327 122988538 -27795015 - MIR SINE MIR -12 250 31 339 209 43 47 chr11 122989501 122989682 -27793871 - MIR SINE MIR -18 244 1 650 181 9 0 chr11 122989805 122989921 -27793632 + MER5A DNA MER1_type 3 119 -70 2315 89 0 0 chr11 122989958 122990240 -27793313 + AluY SINE Alu 1 282 -29 833 484 0 3 chr11 122990240 122990548 -27793005 + AluSx SINE Alu 6 312 0 422 285 24 0 chr11 122990559 122990682 -27792871 + MIR3 SINE MIR 35 160 -48 233 171 0 0 chr11 122990692 122990733 -27792820 - L2 LINE L2 -1 3312 3272 221 260 31 63 chr11 122990868 122990995 -27792558 + L2 LINE L2 2636 2758 -556 333 265 26 43 chr11 122992340 122992457 -27791096 + L2 LINE L2 3185 3299 -14 306 106 0 0 chr11 122992458 122992505 -27791048 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 777 265 98 4 chr11 122992553 122992787 -27790766 + MIR SINE MIR 1 256 -6 387 0 0 0 chr11 122994389 122994432 -27789121 + (CCAA)n Simple_repeat Simple_repeat 2 44 0 262 291 0 23 chr11 122994442 122994528 -27789025 + MER5A DNA MER1_type 82 165 -24 182 225 0 0 chr11 122995014 122995054 -27788499 + MIR SINE MIR 106 145 -117 405 294 50 12 chr11 122995644 122995804 -27787749 - MIR SINE MIR -95 167 2 246 274 0 0 chr11 122996398 122996449 -27787104 + L2 LINE L2 3225 3275 -38 1633 168 27 4 chr11 122996569 122996831 -27786722 - AluJo SINE Alu -44 268 1 1047 255 21 74 chr11 122996836 122997310 -27786243 - L1M4 LINE L1 -2070 5495 5047 244 227 45 23 chr11 122997328 122997416 -27786137 - L1M4 LINE L1 -3963 3602 3513 25 31 0 0 chr11 122997602 122997634 -27785919 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr11 122997829 122997850 -27785703 + AT_rich Low_complexity Low_complexity 1 21 0 613 298 21 25 chr11 122998049 122998331 -27785222 - HAL1 LINE L1 -842 1665 1385 804 325 52 15 chr11 122998413 122998954 -27784599 + L1MC/D LINE L1 4061 4621 -1525 2036 122 0 0 chr11 122998967 122999238 -27784315 - AluSx SINE Alu -35 277 7 423 108 0 31 chr11 122999555 122999620 -27783933 - U2 snRNA snRNA -125 63 1 252 0 0 0 chr11 122999740 122999768 -27783785 + (CA)n Simple_repeat Simple_repeat 2 29 0 413 292 142 61 chr11 122999779 123000175 -27783378 + L1MC/D LINE L1 5443 5884 -358 182 381 48 0 chr11 123001287 123001392 -27782161 + MIR SINE MIR 38 147 -61 475 240 19 10 chr11 123001636 123001780 -27781773 - MIR SINE MIR -62 146 41 189 365 14 0 chr11 123002069 123002143 -27781410 - L2 LINE L2 -5 3308 3234 2323 83 7 0 chr11 123002964 123003254 -27780299 - AluY SINE Alu -19 292 1 519 175 49 42 chr11 123004121 123004264 -27779289 + L1MA9 LINE L1 6169 6312 0 271 342 20 34 chr11 123004308 123004457 -27779096 - L2 LINE L2 -181 3091 2945 407 295 35 96 chr11 123004521 123004833 -27778720 - L2 LINE L2 -460 2854 2562 209 156 0 22 chr11 123005328 123005373 -27778180 + (TA)n Simple_repeat Simple_repeat 1 44 0 3814 75 6 10 chr11 123005791 123006284 -27777269 - L1PA8 LINE L1 -1 6171 5681 600 293 96 8 chr11 123006661 123006900 -27776653 - MIR SINE MIR -2 260 1 2344 99 3 3 chr11 123007419 123007731 -27775822 + AluSx SINE Alu 1 312 0 189 0 0 0 chr11 123007919 123007940 -27775613 + (C)n Simple_repeat Simple_repeat 1 21 0 330 45 0 0 chr11 123007969 123008013 -27775540 + (A)n Simple_repeat Simple_repeat 1 44 0 180 77 0 0 chr11 123008014 123008040 -27775513 + (GA)n Simple_repeat Simple_repeat 1 26 0 2284 71 10 7 chr11 123008668 123008962 -27774591 + AluSg SINE Alu 1 295 -15 371 287 52 0 chr11 123009289 123009404 -27774149 + MIR SINE MIR 21 141 -121 966 255 53 0 chr11 123009464 123009707 -27773846 + MIR SINE MIR 2 257 -5 184 189 19 38 chr11 123009716 123009769 -27773784 + MIR SINE MIR 211 262 0 34 24 0 0 chr11 123010196 123010237 -27773316 + AT_rich Low_complexity Low_complexity 1 41 0 514 277 155 0 chr11 123011205 123011353 -27772200 + MER5A DNA MER1_type 10 180 -9 1195 152 88 44 chr11 123011783 123012080 -27771473 + L1MD3 LINE L1 7686 7995 0 340 260 195 45 chr11 123012702 123012902 -27770651 + MIR SINE MIR 12 241 -21 348 329 74 40 chr11 123012923 123013072 -27770481 - L2 LINE L2 -4 3268 3115 548 294 131 14 chr11 123013072 123013293 -27770260 - MIR SINE MIR 0 262 16 1568 160 7 65 chr11 123013324 123013631 -27769922 + AluJb SINE Alu 1 289 -23 1572 146 120 0 chr11 123014076 123014350 -27769203 + AluJo SINE Alu 1 307 -5 300 256 173 52 chr11 123015037 123015228 -27768325 - MIR SINE MIR -44 218 5 380 259 106 69 chr11 123015361 123015550 -27768003 - MIR SINE MIR -66 196 1 298 260 115 10 chr11 123016296 123016392 -27767161 - L2 LINE L2 -3 3269 3164 35 0 0 0 chr11 123017523 123017558 -27765995 + AT_rich Low_complexity Low_complexity 1 35 0 753 183 15 168 chr11 123017723 123017917 -27765636 + MIR SINE MIR 15 160 -102 1400 173 87 26 chr11 123017917 123018183 -27765370 + AluJo SINE Alu 1 282 -30 753 183 15 168 chr11 123018183 123018250 -27765303 + MIR SINE MIR 160 236 -26 238 284 73 64 chr11 123021008 123021117 -27762436 - L2 LINE L2 0 3313 3204 310 445 17 7 chr11 123021299 123021589 -27761964 - L2 LINE L2 -501 2813 2521 676 224 141 63 chr11 123021606 123021858 -27761695 + MIR SINE MIR 2 258 -4 2384 90 0 3 chr11 123022294 123022595 -27760958 + AluSc SINE Alu 1 300 -9 274 278 133 22 chr11 123023414 123023576 -27759977 + MIR SINE MIR 18 196 -66 243 304 128 0 chr11 123023594 123023696 -27759857 - L2 LINE L2 -9 3263 3149 1908 174 0 0 chr11 123023717 123024022 -27759531 + AluSx SINE Alu 5 309 -3 1596 172 7 15 chr11 123024207 123024480 -27759073 - AluJo SINE Alu -20 292 22 1525 179 72 51 chr11 123024650 123025025 -27758528 - MLT1B LTR MaLR -7 383 1 426 306 88 0 chr11 123026268 123026428 -27757125 - MIR SINE MIR -42 220 47 2555 50 0 10 chr11 123026735 123027034 -27756519 - AluY SINE Alu -15 296 1 185 0 0 39 chr11 123028287 123028313 -27755240 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1935 132 3 3 chr11 123028496 123028784 -27754769 + AluSx SINE Alu 1 288 -24 23 0 0 0 chr11 123028784 123028807 -27754746 + AT_rich Low_complexity Low_complexity 1 23 0 377 294 87 0 chr11 123029001 123029127 -27754426 + MIR SINE MIR 83 219 -43 2148 120 0 0 chr11 123029300 123029599 -27753954 + AluSg SINE Alu 1 299 -11 215 337 228 18 chr11 123029998 123030336 -27753217 - L2 LINE L2 -553 2761 2353 2403 98 0 0 chr11 123031408 123031715 -27751838 - AluSq SINE Alu -6 307 1 2209 112 20 0 chr11 123031914 123032219 -27751334 + AluSx SINE Alu 1 311 -1 1071 136 109 0 chr11 123032424 123032644 -27750909 + L1P LINE L1 5157 5400 -746 2577 49 0 13 chr11 123032646 123032954 -27750599 + AluY SINE Alu 1 304 -7 2235 115 0 0 chr11 123033418 123033722 -27749831 - AluSx SINE Alu -8 304 1 8187 195 40 60 chr11 123033790 123033991 -27749562 - L1 LINE L1 -940 5206 5002 2141 105 11 0 chr11 123033991 123034277 -27749276 + AluSq SINE Alu 1 289 -24 8187 195 40 60 chr11 123034277 123035051 -27748502 - L1 LINE L1 -1144 5002 4214 342 0 0 0 chr11 123035051 123035089 -27748464 + (TG)n Simple_repeat Simple_repeat 2 39 0 8187 195 40 60 chr11 123035089 123035335 -27748218 - L1 LINE L1 -1932 4214 3964 1852 153 40 0 chr11 123035335 123035635 -27747918 - AluJb SINE Alu 0 312 1 8187 195 40 60 chr11 123035635 123036642 -27746911 - L1 LINE L1 -2182 3964 3022 3986 170 31 19 chr11 123036642 123036996 -27746557 + MER6 DNA MER2_type 1 349 -516 207 0 0 0 chr11 123036996 123037019 -27746534 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 3986 170 31 19 chr11 123037019 123037285 -27746268 + MER6 DNA MER2_type 349 632 -233 2278 101 7 0 chr11 123037285 123037582 -27745971 - AluSq SINE Alu -14 299 1 3986 170 31 19 chr11 123037582 123037644 -27745909 + MER6 DNA MER2_type 632 692 -173 6672 120 32 28 chr11 123037644 123038099 -27745454 + L1MA2 LINE L1 4711 5163 -1141 2353 72 7 16 chr11 123038099 123038403 -27745150 + AluSp SINE Alu 1 301 -12 6672 120 32 28 chr11 123038403 123039366 -27744187 + L1MA2 LINE L1 5163 6120 -184 2070 108 4 0 chr11 123039366 123039645 -27743908 - AluSx SINE Alu -32 280 1 6672 120 32 28 chr11 123039645 123039790 -27743763 + L1MA2 LINE L1 6120 6278 -26 327 25 0 0 chr11 123039790 123039830 -27743723 + (TA)n Simple_repeat Simple_repeat 2 41 0 6672 120 32 28 chr11 123039830 123039858 -27743695 + L1MA2 LINE L1 6278 6304 0 648 128 128 128 chr11 123039862 123040049 -27743504 + MER6 DNA MER2_type 679 865 0 335 219 12 0 chr11 123040049 123040131 -27743422 - L1 LINE L1 -3123 3023 2941 2027 153 7 0 chr11 123040132 123040440 -27743113 - AluSx SINE Alu -2 310 1 1479 182 126 4 chr11 123040491 123040760 -27742793 - AluJb SINE Alu 0 302 1 183 80 0 0 chr11 123040919 123040944 -27742609 + (A)n Simple_repeat Simple_repeat 1 25 0 1922 185 20 60 chr11 123040944 123041171 -27742382 + L1MB4 LINE L1 5386 5620 -563 2038 158 3 0 chr11 123041171 123041482 -27742071 + AluSx SINE Alu 1 312 0 1922 185 20 60 chr11 123041482 123041688 -27741865 + L1MB4 LINE L1 5620 5803 -380 2246 108 0 0 chr11 123041688 123041984 -27741569 - AluSc SINE Alu -13 296 1 1922 185 20 60 chr11 123041984 123042003 -27741550 + L1MB4 LINE L1 5803 5821 -362 1330 176 33 8 chr11 123042003 123042248 -27741305 + AluJo SINE Alu 42 292 -20 1846 131 0 74 chr11 123042252 123042589 -27740964 + L1MB4 LINE L1 5831 6142 -38 818 184 0 29 chr11 123042589 123042725 -27740828 + AluSq/x SINE Alu 2 133 -180 243 133 0 0 chr11 123042750 123042795 -27740758 + LTR66 LTR ERVL 395 439 -171 2157 117 7 0 chr11 123042812 123043103 -27740450 - AluSx SINE Alu -19 293 1 611 248 85 81 chr11 123043264 123043756 -27739797 + L1M4 LINE L1 4567 5060 -1086 709 260 86 66 chr11 123043855 123044159 -27739394 + MER110 LTR ERV1 182 491 0 897 127 16 0 chr11 123044201 123044327 -27739226 - FLAM_C SINE Alu -5 128 1 2441 99 0 0 chr11 123044343 123044656 -27738897 - AluSq SINE Alu 0 313 1 432 234 125 33 chr11 123044657 123044841 -27738712 + L1MC5 LINE L1 7725 7925 -36 2418 101 0 0 chr11 123045029 123045335 -27738218 - AluSx SINE Alu -6 306 1 2236 114 0 10 chr11 123045913 123046219 -27737334 - AluSx SINE Alu -9 303 1 243 300 11 33 chr11 123046225 123046315 -27737238 - L2 LINE L2 0 3313 3226 216 343 96 0 chr11 123047692 123047765 -27735788 + L2 LINE L2 3128 3207 -65 688 351 96 11 chr11 123048327 123048683 -27734870 + L2 LINE L2 2415 2800 -514 935 116 136 72 chr11 123048685 123048713 -27734840 + L1PA16 LINE L1 5890 5915 -251 3694 104 65 2 chr11 123048713 123049234 -27734319 - MER41A LTR ERV1 0 554 1 935 116 136 72 chr11 123049234 123049455 -27734098 + L1PA16 LINE L1 5915 6155 -11 461 312 177 30 chr11 123049466 123049899 -27733654 + L2 LINE L2 2792 3268 -4 404 241 13 0 chr11 123051224 123051303 -27732250 + MIR SINE MIR 5 84 -178 2145 71 4 18 chr11 123051305 123051586 -27731967 - AluY SINE Alu 0 311 35 180 0 0 0 chr11 123051715 123051735 -27731818 + (A)n Simple_repeat Simple_repeat 1 20 0 2285 74 0 39 chr11 123054468 123054780 -27728773 - AluY SINE Alu -11 300 1 218 346 0 37 chr11 123055154 123055235 -27728318 - MIR SINE MIR -115 93 16 722 229 129 73 chr11 123055472 123055774 -27727779 - L2 LINE L2 -639 2675 2357 210 377 24 18 chr11 123056035 123056202 -27727351 - L2 LINE L2 -424 2890 2723 1898 157 26 3 chr11 123056366 123056671 -27726882 + AluSx SINE Alu 1 312 0 182 292 111 0 chr11 123056811 123056883 -27726670 - L3 LINE CR1 -888 689 610 209 290 16 16 chr11 123057021 123057083 -27726470 + MIR SINE MIR 21 82 -180 180 283 0 33 chr11 123057113 123057173 -27726380 + MIR SINE MIR 166 223 -39 23 54 0 0 chr11 123057904 123057941 -27725612 + GC_rich Low_complexity Low_complexity 1 37 0 608 141 0 12 chr11 123058598 123058683 -27724870 + FLAM_A SINE Alu 38 121 -21 198 0 0 0 chr11 123058844 123058866 -27724687 + (T)n Simple_repeat Simple_repeat 1 22 0 2061 107 0 0 chr11 123059154 123059425 -27724128 + AluSx SINE Alu 18 288 -24 783 155 9 0 chr11 123059426 123059542 -27724011 - AluJo/FLAM SINE Alu -185 117 1 550 264 44 44 chr11 123059646 123059896 -27723657 - HAL1 LINE L1 0 2507 2258 1506 178 4 8 chr11 123060146 123060410 -27723143 - AluJo SINE Alu -49 263 1 410 298 84 22 chr11 123060776 123060954 -27722599 - L2 LINE L2 0 3313 3125 1259 146 52 41 chr11 123061036 123061303 -27722250 - L1MDa LINE L1 -4828 1712 1443 584 182 0 122 chr11 123061301 123061449 -27722104 + L1MDa LINE L1 892 1021 -5519 * 633 140 20 0 chr11 123061488 123061588 -27721965 + L1MDa LINE L1 1011 1112 -5428 1283 196 78 9 chr11 123061589 123061921 -27721632 - L1MDa LINE L1 -5091 1449 1095 259 265 0 15 chr11 123061984 123062052 -27721501 - L2 LINE L2 -556 2758 2692 2099 109 3 7 chr11 123062120 123062437 -27721116 - AluSx SINE Alu 0 316 1 225 273 52 0 chr11 123062534 123062611 -27720942 + L2 LINE L2 2304 2384 -930 372 198 99 36 chr11 123062694 123062805 -27720748 - LTR50 LTR ERVL -677 118 1 2334 86 3 7 chr11 123062935 123063236 -27720317 - AluSx SINE Alu -12 300 1 30 59 0 0 chr11 123063332 123063383 -27720170 + AT_rich Low_complexity Low_complexity 1 51 0 463 276 93 82 chr11 123063414 123063929 -27719624 - L1ME4a LINE L1 -81 6040 5520 2361 107 3 0 chr11 123064172 123064481 -27719072 + AluSp SINE Alu 1 310 -3 774 29 10 29 chr11 123065105 123065208 -27718345 - L1PB2 LINE L1 -2 6149 6049 1442 255 54 98 chr11 123065704 123065865 -27717688 + L1MEd LINE L1 415 581 -5729 206 81 27 0 chr11 123065865 123065902 -27717651 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 1737 123 52 0 chr11 123065907 123066159 -27717394 - AluY SINE Alu -46 265 1 1442 255 54 98 chr11 123066159 123066715 -27716838 + L1MEd LINE L1 585 1125 -5185 2079 147 13 0 chr11 123066715 123067022 -27716531 + AluSx SINE Alu 1 311 -1 1442 255 54 98 chr11 123067022 123067461 -27716092 + L1MEd LINE L1 1125 1582 -4728 1437 141 29 80 chr11 123067485 123067761 -27715792 + AluJo SINE Alu 21 282 -30 665 243 101 0 chr11 123068123 123068312 -27715241 - MIR SINE MIR -2 260 53 310 352 43 25 chr11 123068860 123069022 -27714531 - MIR SINE MIR -51 211 47 2249 105 0 10 chr11 123069714 123070027 -27713526 - AluSg SINE Alu 0 310 1 1563 205 3 20 chr11 123070029 123070326 -27713227 - AluJo SINE Alu -20 292 1 2172 101 11 0 chr11 123071014 123071301 -27712252 + AluSg SINE Alu 1 290 -20 376 309 105 12 chr11 123071823 123071985 -27711568 - MIR SINE MIR 0 262 86 2351 99 3 3 chr11 123072111 123072424 -27711129 - AluSp SINE Alu 0 313 1 308 264 16 64 chr11 123072684 123072809 -27710744 - L1ME4a LINE L1 -104 6017 5899 21 36 0 0 chr11 123072821 123072849 -27710704 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chr11 123073108 123073136 -27710417 + (A)n Simple_repeat Simple_repeat 1 28 0 341 231 13 0 chr11 123074298 123074376 -27709177 + L1MEc LINE L1 36 114 -6282 1030 292 106 60 chr11 123074380 123075153 -27708400 + L1MEc LINE L1 189 997 -5399 3164 236 87 98 chr11 123075301 123076095 -27707458 + HAL1 LINE L1 189 990 -1517 2119 127 0 13 chr11 123076095 123076402 -27707151 + AluSx SINE Alu 1 303 -9 3164 236 87 98 chr11 123076402 123076440 -27707113 + HAL1 LINE L1 990 1027 -1480 529 78 0 0 chr11 123076440 123076504 -27707049 + L1PA10 LINE L1 6088 6151 -17 3164 236 87 98 chr11 123076504 123077206 -27706347 + HAL1 LINE L1 1027 1707 -800 544 304 92 17 chr11 123077209 123077449 -27706104 + L2 LINE L2 3038 3295 -18 2353 106 0 0 chr11 123078062 123078365 -27705188 - AluSg SINE Alu -7 303 1 2180 123 3 0 chr11 123079141 123079441 -27704112 - AluSx SINE Alu -11 301 1 406 280 80 25 chr11 123079458 123079650 -27703903 - MIR SINE MIR -7 255 58 21 0 0 0 chr11 123079662 123079683 -27703870 + AT_rich Low_complexity Low_complexity 1 21 0 1705 183 3 28 chr11 123079721 123080038 -27703515 - AluJo SINE Alu -3 309 1 413 129 0 0 chr11 123080237 123080299 -27703254 + MER1B DNA MER1_type 2 63 -274 1152 126 37 37 chr11 123080305 123080495 -27703058 + MER1B DNA MER1_type 148 337 -2 187 333 77 26 chr11 123080539 123080617 -27702936 + L2 LINE L2 3158 3239 -33 2072 111 0 0 chr11 123081853 123082180 -27701373 + AluSx SINE Alu 6 332 0 1029 123 0 182 chr11 123082252 123082488 -27701065 - 7SK RNA RNA 0 193 1 367 259 48 27 chr11 123082575 123082722 -27700831 + MER5C DNA MER1_type 128 277 -47 781 245 93 110 chr11 123082865 123083557 -27699996 - L1MC5 LINE L1 -44 7917 7245 720 281 5 11 chr11 123083557 123083742 -27699811 - MER5A DNA MER1_type -3 186 3 781 245 93 110 chr11 123083742 123084027 -27699526 - L1MC5 LINE L1 -716 7245 6957 282 218 0 0 chr11 123084084 123084139 -27699414 + AluJb SINE Alu 73 127 -175 295 200 0 0 chr11 123084776 123084826 -27698727 + MIR SINE MIR 212 261 -1 21 57 0 0 chr11 123085047 123085082 -27698471 + AT_rich Low_complexity Low_complexity 1 35 0 2389 79 3 0 chr11 123085467 123085757 -27697796 - AluSg SINE Alu -19 291 1 21 71 0 0 chr11 123085984 123086026 -27697527 + AT_rich Low_complexity Low_complexity 1 42 0 289 330 36 9 chr11 123086565 123086677 -27696876 + MIR SINE MIR 26 140 -122 357 343 91 19 chr11 123087257 123087682 -27695871 - L2 LINE L2 -95 3218 2690 1881 120 29 63 chr11 123087871 123088187 -27695366 + AluSx SINE Alu 1 305 -7 4591 157 5 16 chr11 123089070 123089858 -27693695 + L1PA15 LINE L1 5387 6165 0 242 250 78 0 chr11 123090474 123090538 -27693015 + MLT1I LTR MaLR 316 384 -25 2220 110 0 10 chr11 123090550 123090850 -27692703 + AluSx SINE Alu 1 297 -15 2408 87 7 0 chr11 123091497 123091807 -27691746 - AluSx SINE Alu 0 312 1 1266 223 22 22 chr11 123095374 123095693 -27687860 + L1MA4 LINE L1 5978 6296 -4 195 129 0 0 chr11 123095979 123096010 -27687543 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 782 148 0 0 chr11 123096040 123096148 -27687405 - FLAM_A SINE Alu -32 110 3 26 0 0 0 chr11 123096196 123096222 -27687331 + AT_rich Low_complexity Low_complexity 1 26 0 180 293 17 0 chr11 123096579 123096637 -27686916 + L2 LINE L2 2264 2322 -992 1111 292 57 6 chr11 123096649 123096998 -27686555 + L2 LINE L2 2448 2814 -500 563 218 58 29 chr11 123097176 123097350 -27686203 + L1MC4a LINE L1 5679 5857 -1951 246 32 0 0 chr11 123097389 123097420 -27686133 + (CA)n Simple_repeat Simple_repeat 1 31 0 251 295 80 9 chr11 123097465 123097577 -27685976 + L2 LINE L2 2938 3057 -215 2243 120 0 3 chr11 123097807 123098115 -27685438 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr11 123098141 123098162 -27685391 + AT_rich Low_complexity Low_complexity 1 21 0 5594 74 42 3 chr11 123098371 123099124 -27684429 + L1PA10 LINE L1 5386 6168 0 21 0 0 0 chr11 123100467 123100488 -27683065 + AT_rich Low_complexity Low_complexity 1 21 0 203 179 0 0 chr11 123104846 123104885 -27678668 + (CCA)n Simple_repeat Simple_repeat 1 39 0 2149 119 0 0 chr11 123109324 123109619 -27673934 - AluSx SINE Alu -17 295 1 2401 48 14 0 chr11 123109677 123109970 -27673583 + AluY SINE Alu 1 297 -14 419 309 38 53 chr11 123110424 123110616 -27672937 - MIR SINE MIR -54 208 21 2082 109 0 0 chr11 123113440 123113748 -27669805 + AluSx SINE Alu 1 308 0 208 250 132 0 chr11 123117157 123117225 -27666328 + MIR SINE MIR 146 222 -40 408 20 0 0 chr11 123119910 123119959 -27663594 + (TG)n Simple_repeat Simple_repeat 2 50 0 593 188 0 80 chr11 123120203 123120341 -27663212 - L2 LINE L2 0 3313 3187 1740 100 0 8 chr11 123121257 123121496 -27662057 - AluSx SINE Alu -18 294 58 2041 115 0 44 chr11 123123906 123124227 -27659326 - AluSx SINE Alu -5 307 1 181 184 132 0 chr11 123124785 123124823 -27658730 - L2 LINE L2 -2 3311 3269 2301 93 0 0 chr11 123126084 123126386 -27657167 - AluSx SINE Alu -9 303 2 3320 85 2 20 chr11 123127236 123127695 -27655858 + L1PA8 LINE L1 5719 6169 -3 25 31 0 0 chr11 123127802 123127834 -27655719 + AT_rich Low_complexity Low_complexity 1 32 0 2112 96 10 3 chr11 123129889 123130180 -27653373 - AluSx SINE Alu -19 293 1 1820 117 14 18 chr11 123130311 123130620 -27652933 - AluSx SINE Alu 0 308 1 629 188 34 0 chr11 123131410 123131527 -27652026 + FLAM_A SINE Alu 7 127 -15 216 308 205 0 chr11 123131527 123131605 -27651948 - L2 LINE L2 -22 3250 3157 2071 128 0 0 chr11 123131862 123132174 -27651379 - AluSx SINE Alu 0 312 1 24 32 0 0 chr11 123132368 123132399 -27651154 + AT_rich Low_complexity Low_complexity 1 31 0 1335 142 30 21 chr11 123132466 123132699 -27650854 + MER46A DNA MER2_type 1 235 -1 2085 125 3 0 chr11 123132731 123133026 -27650527 + AluSq SINE Alu 1 296 -17 966 257 19 55 chr11 123133598 123133729 -27649824 + MIR SINE MIR 15 137 -125 2108 69 44 0 chr11 123133729 123134029 -27649524 + AluY SINE Alu 1 312 0 966 257 19 55 chr11 123134029 123134151 -27649402 + MIR SINE MIR 137 262 0 1560 171 33 4 chr11 123134680 123134954 -27648599 - AluJb SINE Alu -30 282 1 1925 149 0 0 chr11 123134957 123135252 -27648301 - AluJo SINE Alu -17 295 1 2121 112 0 22 chr11 123136620 123136932 -27646621 - AluSx SINE Alu -7 305 1 2258 87 0 6 chr11 123136962 123137273 -27646280 + AluY SINE Alu 1 309 -2 23 68 0 0 chr11 123137398 123137442 -27646111 + AT_rich Low_complexity Low_complexity 1 44 0 2257 90 0 0 chr11 123137868 123138168 -27645385 + AluSq SINE Alu 1 300 -13 21 0 0 0 chr11 123138281 123138302 -27645251 + AT_rich Low_complexity Low_complexity 1 21 0 1070 131 6 0 chr11 123139304 123139472 -27644081 - AluJb SINE Alu -10 302 134 2227 95 3 7 chr11 123139472 123139778 -27643775 - AluSx SINE Alu -7 305 1 309 355 18 9 chr11 123139974 123140084 -27643469 + L2 LINE L2 3116 3226 -46 824 209 11 22 chr11 123140327 123140509 -27643044 - MER58C DNA MER1_type 0 215 36 473 352 236 5 chr11 123140528 123140965 -27642588 - L2 LINE L2 -556 2758 2221 327 233 132 79 chr11 123141121 123141204 -27642349 + L1ME4a LINE L1 5619 5696 -2112 2383 90 0 0 chr11 123141204 123141514 -27642039 + AluSg SINE Alu 1 310 0 327 233 132 79 chr11 123141514 123141619 -27641934 + L1ME4a LINE L1 5696 5817 -1991 301 256 16 64 chr11 123141648 123141773 -27641780 + L1ME4a LINE L1 5899 6017 -104 23 0 0 0 chr11 123142004 123142027 -27641526 + AT_rich Low_complexity Low_complexity 1 23 0 2267 72 0 19 chr11 123142136 123142443 -27641110 - AluSq SINE Alu -12 301 1 2068 111 7 0 chr11 123143601 123143898 -27639655 - AluSq SINE Alu -12 301 3 2164 103 0 3 chr11 123144373 123144673 -27638880 - AluSx SINE Alu -13 299 1 2780 72 21 5 chr11 123145249 123145623 -27637930 + L1PA10 LINE L1 5786 6165 -3 2229 115 0 0 chr11 123145746 123146058 -27637495 + AluSx SINE Alu 1 312 0 1579 103 36 0 chr11 123146483 123146706 -27636847 - AluSp SINE Alu -7 306 76 450 304 144 10 chr11 123146858 123147059 -27636494 - MIR SINE MIR -15 247 20 1091 149 0 0 chr11 123149778 123149939 -27633614 - AluJb SINE Alu -15 297 137 2165 100 7 7 chr11 123150793 123151084 -27632469 + AluSq SINE Alu 1 291 -22 386 286 132 17 chr11 123151622 123151909 -27631644 - L1MC4 LINE L1 -226 7816 7497 757 162 0 8 chr11 123152013 123152130 -27631423 + FLAM_A SINE Alu 1 116 -17 1941 161 0 7 chr11 123152373 123152671 -27630882 + AluJo SINE Alu 1 296 -16 2182 129 0 0 chr11 123152900 123153202 -27630351 + AluSx SINE Alu 1 302 -10 1655 159 68 25 chr11 123154979 123155300 -27628253 - L1MB8 LINE L1 0 6178 5844 27 0 0 0 chr11 123155309 123155336 -27628217 + AT_rich Low_complexity Low_complexity 1 27 0 2390 54 3 17 chr11 123155496 123155793 -27627760 - AluY SINE Alu -18 293 1 253 274 94 9 chr11 123155998 123156104 -27627449 - L1MB8 LINE L1 -439 5682 5568 21 0 0 0 chr11 123156411 123156432 -27627121 + AT_rich Low_complexity Low_complexity 1 21 0 1924 156 7 0 chr11 123159048 123159337 -27624216 + AluJo SINE Alu 1 291 -21 457 219 57 49 chr11 123160448 123160571 -27622982 + MIR SINE MIR 20 143 -119 557 122 12 0 chr11 123161390 123161472 -27622081 - MER30B DNA MER1_type 0 190 108 1569 198 48 7 chr11 123162040 123162333 -27621220 - AluJo SINE Alu -7 305 1 1606 173 36 23 chr11 123162528 123162834 -27620719 + AluJo SINE Alu 1 310 -2 261 272 136 19 chr11 123163332 123163435 -27620118 - MIR3 SINE MIR -7 201 87 1719 146 0 120 chr11 123163579 123163761 -27619792 - AluJo SINE Alu 0 302 178 2234 104 0 0 chr11 123163761 123164048 -27619505 + AluSx SINE Alu 6 292 -20 1719 146 0 120 chr11 123164048 123164207 -27619346 - AluJo SINE Alu -124 178 2 230 305 0 0 chr11 123164326 123164385 -27619168 + CT-rich Low_complexity Low_complexity 3 61 0 2000 123 7 20 chr11 123166896 123167189 -27616364 - AluSx SINE Alu -21 291 3 2198 108 3 3 chr11 123167213 123167510 -27616043 - AluSx SINE Alu -13 299 3 1697 115 100 0 chr11 123167636 123167896 -27615657 - AluSp SINE Alu -23 290 5 899 249 114 61 chr11 123167900 123168425 -27615128 + HAL1 LINE L1 848 1400 -1107 469 189 11 21 chr11 123168480 123168575 -27614978 + AluSg/x SINE Alu 204 297 -15 339 192 91 40 chr11 123168577 123168676 -27614877 + HAL1 LINE L1 2351 2454 -53 1726 175 10 16 chr11 123168681 123168990 -27614563 - AluJb SINE Alu -5 307 1 2033 83 3 63 chr11 123168993 123169328 -27614225 - AluSp SINE Alu 0 317 1 387 348 123 29 chr11 123169354 123169630 -27613923 - L2 LINE L2 -74 3198 2897 484 258 46 36 chr11 123171144 123171338 -27612215 + MER117 DNA MER1_type 1 196 -1 203 231 148 46 chr11 123171850 123171958 -27611595 - MIR3 SINE MIR -23 185 67 2332 102 0 3 chr11 123172049 123172354 -27611199 - AluSp SINE Alu -9 304 1 1917 168 7 3 chr11 123172356 123172665 -27610888 - AluJo SINE Alu -2 310 1 2055 145 0 3 chr11 123172665 123172969 -27610584 - AluJb SINE Alu -8 304 2 2395 75 3 0 chr11 123173161 123173453 -27610100 + AluY SINE Alu 1 293 -18 1456 184 75 20 chr11 123173967 123174147 -27609406 - AluJo SINE Alu -3 309 105 231 114 0 0 chr11 123174147 123174182 -27609371 + (TG)n Simple_repeat Simple_repeat 2 36 0 1456 184 75 20 chr11 123174182 123174294 -27609259 - AluJo SINE Alu -207 105 1 2067 181 28 33 chr11 123174470 123174868 -27608685 + MSTD LTR MaLR 1 396 0 291 229 0 0 chr11 123174971 123175019 -27608534 + MSTD LTR MaLR 247 294 -102 485 288 0 16 chr11 123175199 123175324 -27608229 - L2 LINE L2 0 3272 3150 200 303 40 0 chr11 123176187 123176263 -27607290 + CT-rich Low_complexity Low_complexity 3 81 0 503 356 66 41 chr11 123176274 123176594 -27606959 - L2 LINE L2 0 3272 2945 313 299 0 0 chr11 123176645 123176722 -27606831 + Tigger3(Golem) DNA MER2_type 1 77 -2952 * 946 155 7 0 chr11 123176720 123176862 -27606691 + Tigger3(Golem) DNA MER2_type 2886 3028 -1 2370 85 3 7 chr11 123177016 123177321 -27606232 + AluSx SINE Alu 1 304 -8 1291 93 11 22 chr11 123177389 123177572 -27605981 + AluJb SINE Alu 49 229 -83 523 101 0 25 chr11 123177572 123177651 -27605902 - Alu SINE Alu -11 298 222 451 203 0 13 chr11 123177651 123177730 -27605823 + AluJb SINE Alu 217 294 -18 184 318 40 80 chr11 123177736 123177912 -27605641 + L2 LINE L2 2587 2755 -559 1688 193 3 13 chr11 123178235 123178540 -27605013 + AluJb SINE Alu 1 302 -10 1255 168 59 14 chr11 123178545 123178765 -27604788 + AluJo SINE Alu 1 230 -82 491 294 72 11 chr11 123179316 123179496 -27604057 - MIR SINE MIR -56 206 16 1292 158 9 27 chr11 123179673 123179894 -27603659 - AluJo SINE Alu -11 301 85 1825 252 104 49 chr11 123180632 123181064 -27602489 - L1ME3A LINE L1 -105 6065 5658 407 110 96 0 chr11 123181064 123181137 -27602416 - MER116 DNA Mariner 0 80 1 1825 252 104 49 chr11 123181137 123181543 -27602010 - L1ME3A LINE L1 -512 5658 5276 1622 143 0 0 chr11 123181543 123181774 -27601779 - AluJb SINE Alu -81 231 1 1825 252 104 49 chr11 123181774 123182159 -27601394 - L1ME3A LINE L1 -894 5276 4914 2193 121 3 0 chr11 123182159 123182456 -27601097 - AluSx SINE Alu -14 298 1 1825 252 104 49 chr11 123182456 123182512 -27601041 - L1ME3A LINE L1 -1256 4914 4863 1676 208 3 0 chr11 123182512 123182806 -27600747 - AluJo SINE Alu -17 295 1 1825 252 104 49 chr11 123182806 123183023 -27600530 - L1ME3A LINE L1 -1307 4863 4485 1508 203 42 78 chr11 123183079 123183513 -27600040 - L1MB7 LINE L1 -25 6159 5742 2392 103 0 0 chr11 123183530 123183831 -27599722 - AluSx SINE Alu -11 301 1 702 279 122 18 chr11 123183838 123184273 -27599280 - L1ME3A LINE L1 -1678 4468 3996 1798 178 11 0 chr11 123184332 123184618 -27598935 - AluJb SINE Alu -23 289 1 234 0 0 0 chr11 123185552 123185578 -27597975 + (TG)n Simple_repeat Simple_repeat 2 27 0 1929 115 37 4 chr11 123185579 123185849 -27597704 - AluSx SINE Alu -33 279 1 1379 175 103 0 chr11 123187021 123187284 -27596269 - AluJb SINE Alu -22 290 1 449 123 0 0 chr11 123187296 123187361 -27596192 - AluS SINE Alu -21 289 225 255 171 0 0 chr11 123187361 123187402 -27596151 - Alu SINE Alu -259 41 1 3683 242 109 42 chr11 123187403 123188924 -27594629 - L2 LINE L2 -10 3303 1693 1739 147 3 37 chr11 123188936 123189260 -27594293 + AluSx SINE Alu 1 312 0 5301 122 40 18 chr11 123189261 123189708 -27593845 - L1MC1 LINE L1 -149 6184 5748 1682 168 63 26 chr11 123189708 123190059 -27593494 - MLT1A1 LTR MaLR -1 364 1 5301 122 40 18 chr11 123190059 123190490 -27593063 - L1MC1 LINE L1 -585 5748 5287 884 207 0 11 chr11 123190490 123190669 -27592884 - AluJo SINE Alu -14 298 122 3344 187 15 51 chr11 123190669 123190942 -27592611 - L1MC1 LINE L1 -864 5282 5001 2028 139 0 3 chr11 123190942 123191245 -27592308 - AluSx SINE Alu -8 304 3 3344 187 15 51 chr11 123191245 123191571 -27591982 - L1MC1 LINE L1 -1145 5001 4715 2063 131 7 3 chr11 123191571 123191876 -27591677 - AluSx SINE Alu -5 307 2 3344 187 15 51 chr11 123191876 123192065 -27591488 - L1MC1 LINE L1 -1431 4715 4521 711 250 51 34 chr11 123192097 123192333 -27591220 - L2 LINE L2 -1852 1462 1223 1708 192 138 13 chr11 123192416 123192879 -27590674 - L1MB8 LINE L1 0 6178 5658 485 263 76 47 chr11 123192879 123193115 -27590438 - L2 LINE L2 -2209 1105 863 198 269 37 46 chr11 123193483 123193591 -27589962 + MIR SINE MIR 107 213 -49 249 304 50 64 chr11 123194252 123194472 -27589081 - L2 LINE L2 -5 3308 3092 1722 98 0 0 chr11 123194588 123194813 -27588740 - AluSg/x SINE Alu 0 310 86 1350 238 139 32 chr11 123195225 123195715 -27587838 - MLT1G1 LTR MaLR 0 595 2 288 250 167 10 chr11 123197623 123197719 -27585834 - L2 LINE L2 -2 3311 3201 270 81 0 0 chr11 123198122 123198159 -27585394 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 289 136 30 0 chr11 123198167 123198233 -27585320 + GA-rich Low_complexity Low_complexity 5 72 0 1488 181 27 33 chr11 123198237 123198536 -27585017 + AluJo SINE Alu 1 297 -15 2517 66 0 0 chr11 123199037 123199341 -27584212 - AluY SINE Alu -7 304 1 1855 172 7 0 chr11 123199539 123199836 -27583717 + AluJo SINE Alu 1 299 -13 201 94 0 0 chr11 123200451 123200483 -27583070 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 754 281 95 61 chr11 123200483 123200723 -27582830 - L2 LINE L2 -15 3298 3068 2153 104 31 0 chr11 123200723 123201011 -27582542 - AluSx SINE Alu -15 297 1 754 281 95 61 chr11 123201011 123201281 -27582272 - L2 LINE L2 -245 3068 2767 339 242 176 22 chr11 123201920 123202283 -27581270 - L1MB8 LINE L1 -582 5584 5172 455 276 112 9 chr11 123202342 123202458 -27581095 - FLAM_A SINE Alu -3 130 3 1539 133 26 4 chr11 123202467 123202726 -27580827 - AluSx SINE Alu 0 309 46 411 147 40 0 chr11 123202913 123202988 -27580565 - Looper DNA T2_type -3 1555 1478 2025 113 46 0 chr11 123202988 123203270 -27580283 - AluSx SINE Alu -17 295 1 555 159 33 139 chr11 123205103 123205335 -27578218 - MIR SINE MIR -50 212 2 2322 97 0 0 chr11 123205683 123205982 -27577571 - AluSx SINE Alu -13 299 1 465 115 0 0 chr11 123206318 123206379 -27577174 - AluS SINE Alu -233 79 19 1989 159 0 16 chr11 123206599 123206913 -27576640 - AluJb SINE Alu -3 309 1 216 0 0 0 chr11 123206923 123206947 -27576606 + (A)n Simple_repeat Simple_repeat 1 24 0 2091 120 33 0 chr11 123206957 123207257 -27576296 + AluSp SINE Alu 1 310 -3 289 176 0 0 chr11 123207258 123207309 -27576244 + L1MC4a LINE L1 5883 5933 -1875 533 181 0 0 chr11 123207461 123207555 -27575998 - L1MD3 LINE L1 -172 7823 7730 842 128 0 0 chr11 123207824 123207941 -27575612 - FLAM_C SINE Alu -26 117 1 856 100 0 0 chr11 123208464 123208574 -27574979 + FLAM_A SINE Alu 18 127 -15 803 224 70 23 chr11 123208718 123208932 -27574621 + MIR SINE MIR 16 239 -23 329 200 38 12 chr11 123208932 123209012 -27574541 + FRAM/FAM SINE Alu 4 85 -81 196 30 61 0 chr11 123209019 123209052 -27574501 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2226 117 7 0 chr11 123209161 123209469 -27574084 + AluSx SINE Alu 1 310 -2 357 224 36 128 chr11 123211525 123211655 -27571898 + MER5B DNA MER1_type 1 109 -69 2477 83 3 0 chr11 123211655 123211967 -27571586 - AluSp SINE Alu 0 313 1 357 224 36 128 chr11 123211967 123212032 -27571521 + MER5B DNA MER1_type 109 178 0 797 147 0 59 chr11 123212367 123212503 -27571050 - FLAM_C SINE Alu -14 129 2 2290 115 3 3 chr11 123213238 123213550 -27570003 - AluSx SINE Alu 0 312 1 563 231 62 39 chr11 123214176 123214306 -27569247 + FLAM_A SINE Alu 1 133 0 2240 116 7 0 chr11 123214489 123214799 -27568754 - AluSq SINE Alu -1 312 1 2127 129 0 10 chr11 123216028 123216323 -27567230 + AluSg SINE Alu 1 292 -18 21 0 0 0 chr11 123216771 123216792 -27566761 + AT_rich Low_complexity Low_complexity 1 21 0 2322 97 0 0 chr11 123217288 123217587 -27565966 + AluSx SINE Alu 1 299 -13 555 159 33 139 chr11 123217935 123218167 -27565386 + MIR SINE MIR 2 212 -50 47 0 0 41 chr11 123219985 123220001 -27563552 + AT_rich Low_complexity Low_complexity 1 16 -54 2168 122 0 7 chr11 123220001 123220297 -27563256 + AluSx SINE Alu 1 294 -18 47 0 0 41 chr11 123220297 123220311 -27563242 + AT_rich Low_complexity Low_complexity 16 29 -41 2409 67 0 7 chr11 123220311 123220609 -27562944 - AluY SINE Alu -14 297 2 47 0 0 41 chr11 123220609 123220650 -27562903 + AT_rich Low_complexity Low_complexity 29 70 0 661 220 132 0 chr11 123220651 123220810 -27562743 - MIR SINE MIR -73 189 10 1669 162 7 33 chr11 123221314 123221617 -27561936 + AluJo SINE Alu 1 295 -17 678 121 14 100 chr11 123221809 123221856 -27561697 + Looper DNA T2_type 2 51 -1507 905 122 0 43 chr11 123221856 123221995 -27561558 - FLAM_C SINE Alu 0 133 1 678 121 14 100 chr11 123221995 123222104 -27561449 + Looper DNA T2_type 51 168 -1390 1882 142 42 0 chr11 123222104 123222392 -27561161 - AluJo SINE Alu -12 300 1 678 121 14 100 chr11 123222392 123222412 -27561141 + Looper DNA T2_type 168 188 -1370 1944 95 81 0 chr11 123222412 123222685 -27560868 + AluSx SINE Alu 1 295 -17 678 121 14 100 chr11 123222685 123222760 -27560793 + Looper DNA T2_type 188 1555 -3 1540 133 26 4 chr11 123222947 123223206 -27560347 + AluSx SINE Alu 46 309 0 455 276 112 9 chr11 123223215 123223331 -27560222 + FLAM_A SINE Alu 3 130 -3 395 240 172 26 chr11 123223390 123223764 -27559789 + L1MB8 LINE L1 5172 5595 -748 754 281 95 61 chr11 123224392 123224662 -27558891 + L2 LINE L2 2767 3026 -287 2153 104 31 0 chr11 123224662 123224950 -27558603 + AluSx SINE Alu 1 297 -15 754 281 95 61 chr11 123224950 123225190 -27558363 + L2 LINE L2 3026 3298 -15 201 94 0 0 chr11 123225190 123225222 -27558331 + (TGGA)n Simple_repeat Simple_repeat 1 32 0 1855 172 7 0 chr11 123225837 123226134 -27557419 - AluJo SINE Alu -13 299 1 2517 66 0 0 chr11 123226332 123226636 -27556917 + AluY SINE Alu 1 304 -7 1518 177 27 33 chr11 123227137 123227436 -27556117 - AluJo SINE Alu -15 297 1 289 136 30 0 chr11 123227440 123227506 -27556047 + CT-rich Low_complexity Low_complexity 5 72 0 270 81 0 0 chr11 123227514 123227551 -27556002 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 288 250 167 10 chr11 123227954 123228050 -27555503 + L2 LINE L2 3201 3311 -2 1350 238 139 32 chr11 123229958 123230448 -27553105 + MLT1G1 LTR MaLR 2 595 0 1402 170 0 0 chr11 123230860 123231083 -27552470 + AluJb SINE Alu 88 310 -2 2259 77 21 0 chr11 123232006 123232293 -27551260 - AluSc SINE Alu -16 293 1 2386 87 0 10 chr11 123233051 123233363 -27550190 + AluSc SINE Alu 1 309 0 381 293 49 49 chr11 123233473 123233698 -27549855 + L2 LINE L2 3084 3308 -5 198 269 37 46 chr11 123234359 123234467 -27549086 - MIR SINE MIR -49 213 107 563 251 76 44 chr11 123234835 123235086 -27548467 + L2 LINE L2 863 1121 -2193 1707 191 143 9 chr11 123235087 123235533 -27548020 + L1MB8 LINE L1 5673 6178 0 711 250 51 34 chr11 123235616 123235852 -27547701 + L2 LINE L2 1223 1462 -1852 3403 189 13 48 chr11 123235884 123236073 -27547480 + L1MC1 LINE L1 4521 4715 -1431 2197 128 3 0 chr11 123236073 123236379 -27547174 + AluSx SINE Alu 2 308 -4 3403 189 13 48 chr11 123236379 123236705 -27546848 + L1MC1 LINE L1 4715 5001 -1145 2226 116 0 0 chr11 123236705 123237008 -27546545 + AluSx SINE Alu 3 305 -7 3403 189 13 48 chr11 123237008 123237281 -27546272 + L1MC1 LINE L1 5001 5282 -864 948 202 0 6 chr11 123237281 123237459 -27546094 + AluJo SINE Alu 122 298 -14 5323 121 40 18 chr11 123237459 123237890 -27545663 + L1MC1 LINE L1 5287 5707 -626 1682 168 63 26 chr11 123237890 123238241 -27545312 + MLT1A1 LTR MaLR 1 364 -1 5323 121 40 18 chr11 123238241 123238688 -27544865 + L1MC1 LINE L1 5707 6184 -149 1929 138 0 30 chr11 123238689 123239012 -27544541 - AluSx SINE Alu 0 312 1 3672 239 108 41 chr11 123239024 123240545 -27543008 + L2 LINE L2 1693 3303 -10 477 159 196 19 chr11 123240546 123240653 -27542900 + FLAM_C SINE Alu 1 126 -7 1364 179 103 0 chr11 123240664 123240927 -27542626 + AluJb SINE Alu 1 290 -22 1929 115 37 4 chr11 123242099 123242369 -27541184 + AluSx SINE Alu 1 279 -33 198 0 0 0 chr11 123242370 123242392 -27541161 + (CA)n Simple_repeat Simple_repeat 2 23 0 1798 178 11 0 chr11 123243326 123243612 -27539941 + AluJb SINE Alu 1 289 -23 702 279 122 18 chr11 123243671 123244106 -27539447 + L1ME3A LINE L1 3996 4468 -1678 2406 100 0 0 chr11 123244113 123244414 -27539139 + AluSx SINE Alu 1 301 -11 1508 203 42 78 chr11 123244431 123244865 -27538688 + L1MB7 LINE L1 5742 6159 -25 1825 250 105 50 chr11 123244921 123245138 -27538415 + L1ME3A LINE L1 4485 4688 -1482 1694 205 3 0 chr11 123245138 123245431 -27538122 + AluJo SINE Alu 1 294 -18 1825 250 105 50 chr11 123245431 123245487 -27538066 + L1ME3A LINE L1 4688 4739 -1431 2247 119 3 0 chr11 123245487 123245790 -27537763 + AluSx SINE Alu 1 304 -8 1825 250 105 50 chr11 123245790 123246175 -27537378 + L1ME3A LINE L1 4739 5101 -1069 1622 143 0 0 chr11 123246175 123246406 -27537147 + AluJb SINE Alu 1 231 -81 1825 250 105 50 chr11 123246406 123246812 -27536741 + L1ME3A LINE L1 5101 5483 -687 407 110 96 0 chr11 123246812 123246885 -27536668 + MER116 DNA Mariner 1 80 0 1825 250 105 50 chr11 123246885 123247317 -27536236 + L1ME3A LINE L1 5483 6065 -105 1292 158 9 27 chr11 123248056 123248277 -27535276 + AluJo SINE Alu 85 301 -11 491 294 72 11 chr11 123248454 123248634 -27534919 + MIR SINE MIR 16 206 -56 1255 168 59 14 chr11 123249185 123249405 -27534148 - AluJo SINE Alu -82 230 1 1688 193 3 13 chr11 123249410 123249715 -27533838 - AluJb SINE Alu -10 302 1 451 203 0 13 chr11 123250220 123250299 -27533254 - AluJb SINE Alu -18 294 217 542 101 0 0 chr11 123250299 123250378 -27533175 + Alu SINE Alu 223 301 -9 1291 93 11 22 chr11 123250378 123250561 -27532992 - AluJb SINE Alu -83 229 49 2361 86 3 7 chr11 123250629 123250933 -27532620 - AluSx SINE Alu -9 303 1 946 155 7 0 chr11 123251087 123251229 -27532324 - Tigger3(Golem) DNA MER2_type -1 3028 2886 314 299 0 0 chr11 123251227 123251304 -27532249 - Tigger3(Golem) DNA MER2_type -2952 77 1 * 503 356 66 41 chr11 123251355 123251675 -27531878 + L2 LINE L2 2945 3272 0 200 303 40 0 chr11 123251686 123251762 -27531791 + GA-rich Low_complexity Low_complexity 3 81 0 443 288 0 16 chr11 123252625 123252750 -27530803 + L2 LINE L2 3150 3272 0 294 229 0 0 chr11 123252930 123252978 -27530575 - MSTD LTR MaLR -102 294 247 1934 181 28 33 chr11 123253081 123253479 -27530074 - MSTD LTR MaLR 0 396 1 1464 184 75 20 chr11 123253655 123253767 -27529786 + AluJo SINE Alu 1 105 -207 270 81 0 0 chr11 123253767 123253804 -27529749 + (CA)n Simple_repeat Simple_repeat 2 38 0 1464 184 75 20 chr11 123253804 123253984 -27529569 + AluJo SINE Alu 105 309 -3 2502 64 3 0 chr11 123254494 123254789 -27528764 - AluY SINE Alu -15 296 1 2016 138 0 13 chr11 123254981 123255293 -27528260 + AluJb SINE Alu 2 309 -3 2189 120 7 3 chr11 123255703 123256004 -27527549 + AluSq SINE Alu 1 302 -11 392 239 161 35 chr11 123256018 123256248 -27527305 + L2 LINE L2 2355 2613 -701 475 221 57 0 chr11 123256280 123256420 -27527133 + Charlie5 DNA MER1_type 2477 2624 0 2292 88 0 17 chr11 123256459 123256781 -27526772 + AluSc SINE Alu 1 309 0 31 44 0 0 chr11 123256990 123257035 -27526518 + AT_rich Low_complexity Low_complexity 1 45 0 780 249 81 0 chr11 123257229 123257414 -27526139 + MIR SINE MIR 6 205 -57 675 173 8 16 chr11 123258279 123258406 -27525147 + AluJo SINE Alu 2 127 -185 1343 170 5 0 chr11 123258426 123258632 -27524921 - AluJo SINE Alu -105 207 1 1052 170 6 12 chr11 123258645 123258816 -27524737 + AluJo SINE Alu 129 298 -14 2150 106 3 7 chr11 123259827 123260120 -27523433 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr11 123260402 123260423 -27523130 + AT_rich Low_complexity Low_complexity 1 21 0 1571 150 70 17 chr11 123260700 123260987 -27522566 - AluJo SINE Alu -10 302 1 905 283 93 11 chr11 123261068 123261443 -27522110 - L2 LINE L2 -50 3263 2858 850 290 78 12 chr11 123261626 123261961 -27521592 - L2 LINE L2 -653 2661 2305 198 0 0 0 chr11 123261996 123262018 -27521535 + (TC)n Simple_repeat Simple_repeat 2 23 0 186 357 0 12 chr11 123262057 123262141 -27521412 - L2 LINE L2 -1037 2277 2195 221 329 55 0 chr11 123262168 123262241 -27521312 + L2 LINE L2 2992 3068 -204 854 131 0 8 chr11 123262361 123262491 -27521062 - FLAM_A SINE Alu -1 132 4 202 61 0 122 chr11 123264542 123264591 -27518962 + (CCCCG)n Simple_repeat Simple_repeat 2 44 0 1751 92 13 4 chr11 123265602 123265863 -27517690 + AluSx SINE Alu 43 305 0 453 90 0 0 chr11 123265896 123265963 -27517590 + (TAAA)n Simple_repeat Simple_repeat 3 69 0 689 170 0 9 chr11 123266658 123266770 -27516783 + FLAM_A SINE Alu 10 120 -22 212 0 36 0 chr11 123266820 123266848 -27516705 + (TG)n Simple_repeat Simple_repeat 2 30 0 1076 169 96 0 chr11 123266853 123267000 -27516553 - AluJo SINE Alu -31 281 113 513 47 0 0 chr11 123267000 123267064 -27516489 + (TG)n Simple_repeat Simple_repeat 1 64 0 1076 169 96 0 chr11 123267064 123267094 -27516459 - AluJo SINE Alu -199 113 87 1523 149 0 20 chr11 123267274 123267523 -27516030 + AluJb SINE Alu 58 301 -11 1923 143 17 10 chr11 123267530 123267824 -27515729 + AluJb SINE Alu 1 296 -16 489 291 54 14 chr11 123268362 123268510 -27515043 + MER5A DNA MER1_type 36 189 0 1065 167 13 56 chr11 123268684 123268917 -27514636 + AluJo SINE Alu 86 308 -4 1952 93 0 0 chr11 123269343 123269589 -27513964 + AluSx SINE Alu 1 246 -66 1770 163 32 0 chr11 123270342 123270625 -27512928 + AluJb SINE Alu 6 297 -15 788 270 52 4 chr11 123270649 123270882 -27512671 + MIR SINE MIR 1 244 -18 1070 83 0 0 chr11 123271150 123271283 -27512270 + AluY SINE Alu 1 133 -178 2055 125 0 0 chr11 123271439 123271720 -27511833 - AluSx SINE Alu -13 299 19 1997 160 0 16 chr11 123271940 123272253 -27511300 - AluJb SINE Alu -4 308 1 216 0 0 0 chr11 123272263 123272287 -27511266 + (A)n Simple_repeat Simple_repeat 1 24 0 236 330 11 0 chr11 123272316 123272404 -27511149 + AluSp SINE Alu 29 117 -186 1059 215 54 8 chr11 123272512 123272528 -27511025 - L1M4 LINE L1 -3221 2925 2911 2456 78 3 3 chr11 123272528 123272834 -27510719 - AluY SINE Alu -4 307 2 1059 215 54 8 chr11 123272834 123273078 -27510475 - L1M4 LINE L1 -3235 2911 2653 577 288 77 69 chr11 123273115 123273318 -27510235 - L1MC/D LINE L1 -520 5631 5431 2126 114 0 0 chr11 123273318 123273619 -27509934 + AluSx SINE Alu 9 309 0 577 288 77 69 chr11 123273619 123273661 -27509892 - L1MC/D LINE L1 -720 5431 5391 1224 161 43 5 chr11 123273661 123273872 -27509681 + MER20 DNA MER1_type 1 219 0 577 288 77 69 chr11 123273872 123274073 -27509480 - L1MC/D LINE L1 -760 5391 5237 1232 246 131 67 chr11 123274133 123274602 -27508951 + MLT1H1 LTR MaLR 1 542 -7 756 292 44 53 chr11 123274622 123274705 -27508848 - L1MC/D LINE L1 -1837 4292 4210 1583 153 10 61 chr11 123274705 123275000 -27508553 - AluJb SINE Alu -32 280 1 756 292 44 53 chr11 123275000 123275448 -27508105 - L1MC/D LINE L1 -1919 4210 3794 369 313 46 5 chr11 123275510 123275705 -27507848 - HAL1 LINE L1 -946 1561 1359 1232 246 131 67 chr11 123325981 123326450 -27457103 + MLT1H1 LTR MaLR 1 542 -7 756 292 44 53 chr11 123326470 123326553 -27457000 - L1 LINE L1 -1837 4309 4227 1583 153 10 61 chr11 123326553 123326848 -27456705 - AluJb SINE Alu -32 280 1 756 292 44 53 chr11 123326848 123327296 -27456257 - L1 LINE L1 -1919 4227 3811 369 313 46 5 chr11 123327358 123327553 -27456000 - HAL1 LINE L1 -946 1561 1359 263 251 145 43 chr11 123327558 123327765 -27455788 - L1MC/D LINE L1 -4893 1226 999 2005 157 0 0 chr11 123327920 123328219 -27455334 - AluSx SINE Alu -13 299 1 38 0 0 0 chr11 123328223 123328261 -27455292 + AT_rich Low_complexity Low_complexity 1 38 0 2158 123 3 7 chr11 123328659 123328960 -27454593 + AluSx SINE Alu 1 300 -12 30 27 0 0 chr11 123329253 123329290 -27454263 + AT_rich Low_complexity Low_complexity 1 37 0 524 349 42 74 chr11 123329460 123330368 -27453185 + L2 LINE L2 1909 2787 -527 3300 167 52 14 chr11 123330539 123330770 -27452783 + L1MB7 LINE L1 5452 5673 -511 2346 113 0 0 chr11 123330770 123331081 -27452472 + AluSx SINE Alu 1 311 -1 3300 167 52 14 chr11 123331081 123331555 -27451998 + L1MB7 LINE L1 5673 6184 0 1844 201 0 0 chr11 123331566 123331859 -27451694 + AluJb SINE Alu 1 293 -19 1404 165 24 24 chr11 123331888 123332122 -27451431 + AluJo SINE Alu 1 237 -75 2226 133 36 30 chr11 123332122 123332484 -27451069 + THE1B LTR MaLR 1 364 0 1404 165 24 24 chr11 123332484 123332497 -27451056 + AluJo SINE Alu 236 248 -64 283 152 0 91 chr11 123333001 123333040 -27450513 + MIR SINE MIR 203 235 -27 2184 120 152 11 chr11 123333040 123333415 -27450138 + MSTA LTR MaLR 1 428 0 283 152 0 91 chr11 123333415 123333441 -27450112 + MIR SINE MIR 235 262 0 1277 255 97 65 chr11 123333873 123334462 -27449091 - MLT1L LTR MaLR -7 608 1 35 24 0 0 chr11 123334603 123334645 -27448908 + AT_rich Low_complexity Low_complexity 1 42 0 287 165 62 0 chr11 123334650 123334730 -27448823 - L1MC/D LINE L1 -747 5495 5410 1152 118 0 0 chr11 123334730 123334891 -27448662 - L1PA12 LINE L1 -51 6117 5957 1901 123 126 10 chr11 123335292 123335594 -27447959 + MER1B DNA MER1_type 1 337 0 339 282 99 38 chr11 123335934 123336065 -27447488 - MIR SINE MIR -118 144 6 21 0 0 0 chr11 123336887 123336908 -27446645 + AT_rich Low_complexity Low_complexity 1 21 0 733 121 53 193 chr11 123337376 123337583 -27445970 - MER5B DNA MER1_type 0 178 1 292 309 57 8 chr11 123342252 123342375 -27441178 - L2 LINE L2 -26 3287 3159 2049 138 7 3 chr11 123342517 123342815 -27440738 - AluSx SINE Alu -13 299 1 330 323 6 55 chr11 123342909 123343073 -27440480 + L2 LINE L2 3116 3271 -1 761 254 105 19 chr11 123344735 123345050 -27438503 + L1ME4a LINE L1 5513 5854 -267 391 219 130 0 chr11 123345098 123345244 -27438309 + L1ME4a LINE L1 5955 6119 -2 21 0 0 0 chr11 123345255 123345276 -27438277 + AT_rich Low_complexity Low_complexity 1 21 0 553 259 91 65 chr11 123345414 123345524 -27438029 + MIR SINE MIR 23 129 -133 2105 130 3 0 chr11 123345524 123345817 -27437736 + AluSx SINE Alu 1 294 -18 553 259 91 65 chr11 123345817 123345938 -27437615 + MIR SINE MIR 129 260 -2 266 283 81 30 chr11 123346327 123346426 -27437127 + L2 LINE L2 3169 3272 0 311 289 27 60 chr11 123346675 123346824 -27436729 - MIR SINE MIR -56 206 63 1519 151 0 0 chr11 123346870 123347102 -27436451 - AluJo SINE Alu -8 304 73 2013 153 0 7 chr11 123347102 123347402 -27436151 - AluSx SINE Alu -13 299 1 2358 68 0 0 chr11 123347412 123347741 -27435812 - AluY SINE Alu 0 330 2 662 264 87 35 chr11 123347797 123348028 -27435525 + MIR SINE MIR 2 244 -18 2447 63 7 0 chr11 123348162 123348463 -27435090 - AluSc SINE Alu -6 303 1 251 276 95 9 chr11 123349251 123349356 -27434197 + MIR3 SINE MIR 93 206 -2 214 283 212 0 chr11 123349658 123349771 -27433782 + MIR SINE MIR 126 262 0 1503 133 21 128 chr11 123349798 123350135 -27433418 - AluJo SINE Alu -1 301 1 365 206 0 0 chr11 123350136 123350204 -27433349 - AluJo/FLAM SINE Alu -187 115 48 224 305 9 29 chr11 123350341 123350446 -27433107 + L2 LINE L2 2725 2827 -487 1793 151 13 30 chr11 123350504 123350809 -27432744 + AluJo SINE Alu 13 312 0 696 326 73 65 chr11 123350832 123351133 -27432420 + L3 LINE CR1 907 1204 -373 1673 181 27 3 chr11 123351133 123351425 -27432128 + AluJb SINE Alu 1 299 -13 696 326 73 65 chr11 123351425 123351614 -27431939 + L3 LINE CR1 1204 1405 -172 1908 161 3 0 chr11 123351614 123351912 -27431641 + AluJb SINE Alu 1 299 -13 696 326 73 65 chr11 123351912 123352033 -27431520 + L3 LINE CR1 1405 1524 -53 2042 141 3 0 chr11 123352319 123352617 -27430936 + AluJb SINE Alu 1 299 -13 201 74 0 0 chr11 123353260 123353287 -27430266 + (TTTAA)n Simple_repeat Simple_repeat 3 29 0 1977 129 21 0 chr11 123353287 123353567 -27429986 - AluJb SINE Alu -26 286 1 587 235 147 52 chr11 123355098 123355370 -27428183 + L1MCc LINE L1 921 1218 -5205 2431 84 0 3 chr11 123355521 123355832 -27427721 - AluY SINE Alu -1 310 1 506 211 11 0 chr11 123355833 123355928 -27427625 - Tigger7 DNA MER2_type -609 96 1 278 238 47 140 chr11 123357023 123357237 -27426316 - MLT1K LTR MaLR -18 570 377 2018 149 3 17 chr11 123357810 123357967 -27425586 - AluSx SINE Alu -11 291 138 2279 105 0 13 chr11 123357967 123358136 -27425417 - AluSx SINE Alu -10 302 137 2295 70 0 0 chr11 123358136 123358420 -27425133 - AluY SINE Alu -7 304 21 2279 105 0 13 chr11 123358420 123358556 -27424997 - AluSx SINE Alu -175 137 1 2018 149 3 17 chr11 123358556 123358693 -27424860 - AluSx SINE Alu -164 138 1 225 178 0 0 chr11 123359073 123359118 -27424435 + T-rich Low_complexity Low_complexity 3 47 0 887 142 15 8 chr11 123359903 123360037 -27423516 + AluJo SINE Alu 1 135 -177 279 361 90 28 chr11 123360143 123360785 -27422768 + L2 LINE L2 720 1401 -1913 605 279 82 32 chr11 123360982 123361201 -27422352 + MIR SINE MIR 21 250 -12 461 332 172 18 chr11 123361190 123361633 -27421920 + L2 LINE L2 2178 2688 -626 * 299 222 10 50 chr11 123361988 123362087 -27421466 + L2 LINE L2 3219 3313 0 460 282 233 19 chr11 123362116 123362382 -27421171 + L3 LINE CR1 787 1109 -468 23 33 0 0 chr11 123362396 123362426 -27421127 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr11 123362443 123362472 -27421081 + (TA)n Simple_repeat Simple_repeat 1 29 0 24 32 0 0 chr11 123363881 123363912 -27419641 + AT_rich Low_complexity Low_complexity 1 31 0 208 190 35 17 chr11 123363977 123364035 -27419518 - MIR SINE MIR -44 218 160 21 0 0 0 chr11 123364904 123364925 -27418628 + AT_rich Low_complexity Low_complexity 1 21 0 251 122 0 0 chr11 123365940 123365981 -27417572 - Charlie1b DNA MER1_type -1 522 482 * 1255 169 53 43 chr11 123365980 123366282 -27417271 - Charlie1b DNA MER1_type -168 355 51 709 174 148 13 chr11 123366640 123366789 -27416764 + AluJo SINE Alu 63 231 -81 195 69 0 0 chr11 123366816 123366845 -27416708 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 2051 155 0 13 chr11 123367005 123367321 -27416232 + AluJb SINE Alu 1 312 0 2050 123 0 3 chr11 123367829 123368133 -27415420 - AluSx SINE Alu 0 303 1 427 260 54 0 chr11 123368281 123368403 -27415150 - MIR3 SINE MIR 0 208 77 202 234 21 0 chr11 123369028 123369075 -27414478 - MIR SINE MIR -9 253 206 405 335 48 48 chr11 123369370 123369618 -27413935 - L2 LINE L2 -639 2675 2428 473 336 75 17 chr11 123369699 123369994 -27413559 + L2 LINE L2 1718 2029 -1285 257 302 122 14 chr11 123369994 123370133 -27413420 + L2 LINE L2 2329 2482 -832 220 322 0 0 chr11 123371041 123371100 -27412453 + GA-rich Low_complexity Low_complexity 1 59 0 321 284 136 30 chr11 123371545 123371714 -27411839 + MIR3 SINE MIR 11 197 -11 2243 102 0 0 chr11 123371728 123372023 -27411530 - AluSx SINE Alu -17 295 1 215 299 158 49 chr11 123372101 123372285 -27411268 - L2 LINE L2 -455 2859 2656 1360 217 71 0 chr11 123373060 123373178 -27410375 + AluJo SINE Alu 1 109 -203 216 0 0 0 chr11 123373178 123373202 -27410351 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1360 217 71 0 chr11 123373202 123373364 -27410189 + AluJo SINE Alu 109 301 -11 2187 143 9 26 chr11 123374207 123374556 -27408997 - MER2 DNA MER2_type -1 343 1 25 75 0 0 chr11 123375442 123375495 -27408058 + AT_rich Low_complexity Low_complexity 1 53 0 860 209 13 0 chr11 123376431 123376589 -27406964 + FRAM SINE Alu 8 167 -9 2331 109 3 6 chr11 123376598 123376911 -27406642 - AluSx SINE Alu 0 312 1 21 0 0 0 chr11 123377280 123377301 -27406252 + AT_rich Low_complexity Low_complexity 1 21 0 2009 145 0 3 chr11 123377387 123377676 -27405877 + AluSx SINE Alu 1 288 -24 272 277 142 27 chr11 123379724 123379872 -27403681 - L2 LINE L2 -1077 2237 2073 412 304 27 34 chr11 123379899 123380047 -27403506 - MIR SINE MIR -73 189 43 407 256 200 31 chr11 123380452 123380612 -27402941 - MER5A DNA MER1_type -2 187 1 512 271 54 68 chr11 123380801 123381022 -27402531 - MIR SINE MIR -43 219 2 2214 96 3 16 chr11 123381081 123381384 -27402169 - AluSq SINE Alu -14 299 1 206 233 28 50 chr11 123382730 123382811 -27400742 - MIR3 SINE MIR -49 159 98 797 294 120 12 chr11 123382963 123383177 -27400376 + L2 LINE L2 2842 3031 -282 1031 204 92 43 chr11 123383177 123383505 -27400048 + MER2 DNA MER2_type 1 344 0 797 294 120 12 chr11 123383505 123383715 -27399838 + L2 LINE L2 3031 3312 -1 2843 7 0 0 chr11 123384346 123384650 -27398903 - AluYa5 SINE Alu -7 304 1 7692 40 5 6 chr11 123385093 123386028 -27397525 + L1PA5 LINE L1 5213 6146 -8 2506 63 0 3 chr11 123387424 123387723 -27395830 - AluY SINE Alu -13 298 1 231 164 49 33 chr11 123388843 123388904 -27394649 - L1P1 LINE L1 -299 5856 5795 1121 188 42 5 chr11 123388928 123389141 -27394412 - L1MB3 LINE L1 -8 6175 5955 206 305 143 9 chr11 123389753 123389858 -27393695 + L3 LINE CR1 556 674 -903 877 149 15 0 chr11 123389880 123390014 -27393539 + AluJo SINE Alu 1 136 -176 325 360 92 29 chr11 123390112 123390762 -27392791 + L2 LINE L2 711 1401 -1913 617 294 83 28 chr11 123390959 123391177 -27392376 + MIR SINE MIR 21 250 -12 425 337 167 15 chr11 123391166 123391567 -27391986 + L2 LINE L2 2178 2639 -675 * 273 197 0 33 chr11 123392005 123392066 -27391487 + L2 LINE L2 3214 3272 0 260 296 45 18 chr11 123392150 123392373 -27391180 + L1 LINE L1 3205 3433 -2713 307 100 0 0 chr11 123392377 123392417 -27391136 + Alu SINE Alu 1 40 -262 687 183 0 15 chr11 123392417 123392548 -27391005 + FLAM_C SINE Alu 11 139 -4 842 52 0 0 chr11 123392574 123392671 -27390882 - AluY SINE Alu -11 300 204 942 97 13 58 chr11 123393682 123393836 -27389717 + L1MB5 LINE L1 6013 6159 -15 569 297 36 88 chr11 123395851 123396181 -27387372 - L2 LINE L2 -60 3212 2900 1009 161 122 47 chr11 123396181 123396399 -27387154 + MER33 DNA MER1_type 1 242 -2343 2430 84 0 3 chr11 123396399 123396696 -27386857 - AluSq SINE Alu -17 296 1 1009 161 122 47 chr11 123396696 123396732 -27386821 + MER33 DNA MER1_type 242 274 -50 1934 85 4 48 chr11 123396748 123397020 -27386533 - AluSq SINE Alu -53 260 1 509 327 114 22 chr11 123397087 123397402 -27386151 - L2 LINE L2 -404 2910 2567 22 0 0 0 chr11 123397568 123397590 -27385963 + AT_rich Low_complexity Low_complexity 1 22 0 5416 133 46 29 chr11 123397643 123399096 -27384457 - L1PA16 LINE L1 0 6166 4703 1304 125 0 0 chr11 123399099 123399283 -27384270 - AluSg/x SINE Alu -7 303 120 1633 176 0 72 chr11 123399288 123399429 -27384124 - L1 LINE L1 -1701 4445 4295 2039 141 3 0 chr11 123399429 123399726 -27383827 + AluSx SINE Alu 1 298 -14 1633 176 0 72 chr11 123399726 123399958 -27383595 - L1 LINE L1 -1851 4295 4099 840 145 14 51 chr11 123400498 123400636 -27382917 - FLAM_C SINE Alu 0 133 1 2111 116 3 31 chr11 123400707 123401026 -27382527 + AluSq SINE Alu 3 312 -1 812 273 188 22 chr11 123401500 123402046 -27381507 - L2 LINE L2 0 3313 2690 794 159 0 51 chr11 123402047 123402185 -27381368 + AluJ SINE Alu 2 132 -180 1748 294 123 28 chr11 123402200 123403036 -27380517 - L2 LINE L2 -632 2682 1767 2448 45 0 3 chr11 123403081 123403373 -27380180 + AluY SINE Alu 1 291 -20 1211 137 0 0 chr11 123403380 123403555 -27379998 + AluJ SINE Alu 129 303 -9 270 0 0 0 chr11 123403809 123403839 -27379714 + (G)n Simple_repeat Simple_repeat 1 30 0 2351 113 3 0 chr11 123403970 123404279 -27379274 - AluSx SINE Alu -2 310 1 418 133 0 0 chr11 123404280 123404340 -27379213 - L1M3 LINE L1 -661 5673 5614 * 1669 197 49 119 chr11 123404334 123404464 -27379089 - L1MC4 LINE L1 -1109 6933 6795 1569 118 9 26 chr11 123404464 123404693 -27378860 - AluJb SINE Alu -2 310 86 1669 197 49 119 chr11 123404693 123405175 -27378378 - L1MC4 LINE L1 -1247 6795 6364 1139 141 65 5 chr11 123405177 123405376 -27378177 + MER2 DNA MER2_type 3 213 -132 * 3365 103 65 2 chr11 123405374 123405848 -27377705 + MER1A DNA MER1_type 26 529 0 636 198 63 8 chr11 123405848 123405974 -27377579 + MER2 DNA MER2_type 207 339 -6 1410 193 97 100 chr11 123405995 123406193 -27377360 - L1MC4a LINE L1 -1452 6356 6159 2287 81 3 3 chr11 123406193 123406477 -27377076 - AluSx SINE Alu -28 284 1 1410 193 97 100 chr11 123406477 123406816 -27376737 - L1MC4a LINE L1 -1649 6159 5821 1422 168 47 40 chr11 123406816 123406995 -27376558 - AluJb SINE Alu -4 308 125 2202 118 3 0 chr11 123406995 123407292 -27376261 - AluSg SINE Alu -12 298 1 1422 168 47 40 chr11 123407292 123407410 -27376143 - AluJb SINE Alu -187 125 9 489 271 18 18 chr11 123407431 123407601 -27375952 - L1M4 LINE L1 -1459 4687 4518 2068 118 70 53 chr11 123407601 123407670 -27375883 - THE1B LTR MaLR 0 364 298 2119 140 0 0 chr11 123407670 123407963 -27375590 + AluSx SINE Alu 4 296 -16 2068 118 70 53 chr11 123407963 123408249 -27375304 - THE1B LTR MaLR -66 298 3 264 136 0 0 chr11 123408400 123408444 -27375109 - L1MA3 LINE L1 0 6305 6262 481 312 57 18 chr11 123408446 123408847 -27374706 - L1M4 LINE L1 -2527 3619 3203 1280 119 21 0 chr11 123408883 123409077 -27374476 + L1MA3 LINE L1 6086 6283 -22 2242 101 0 3 chr11 123409077 123409364 -27374189 + AluSx SINE Alu 1 286 -26 328 315 117 65 chr11 123409695 123410003 -27373550 + L2 LINE L2 2949 3272 0 433 236 146 34 chr11 123411623 123411801 -27371752 - MIR SINE MIR -17 245 48 2245 115 0 0 chr11 123412343 123412638 -27370915 - AluSx SINE Alu -17 295 1 238 227 93 27 chr11 123412644 123412719 -27370834 + L2 LINE L2 3003 3082 -231 192 154 0 26 chr11 123413008 123413047 -27370506 + L2 LINE L2 3276 3313 0 400 336 119 8 chr11 123413284 123413519 -27370034 - MIR SINE MIR 0 262 2 577 209 203 0 chr11 123413657 123413805 -27369748 + MER5A DNA MER1_type 12 189 0 214 336 112 21 chr11 123413826 123413969 -27369584 + MER5B DNA MER1_type 15 170 -8 550 193 58 76 chr11 123414005 123414176 -27369377 + MER5B DNA MER1_type 2 169 -9 2473 80 6 0 chr11 123414213 123414524 -27369029 - AluSq SINE Alu 0 313 1 2363 103 0 0 chr11 123414628 123414929 -27368624 + AluSx SINE Alu 2 302 -10 206 308 62 0 chr11 123414959 123415024 -27368529 - L3 LINE CR1 -605 972 904 438 208 92 8 chr11 123415024 123415154 -27368399 - L1MD3 LINE L1 -11 7984 7844 8583 140 41 80 chr11 123415154 123416979 -27366574 - MER52A LTR ERV1 0 1755 1 3937 168 18 65 chr11 123416980 123417659 -27365894 - L1MC4a LINE L1 -134 7674 6964 1846 157 3 20 chr11 123417659 123417952 -27365601 - AluJb SINE Alu -24 288 1 3937 168 18 65 chr11 123417952 123418047 -27365506 - L1MC4a LINE L1 -844 6964 6866 2301 106 0 0 chr11 123418047 123418339 -27365214 + AluSq SINE Alu 1 292 -21 3937 168 18 65 chr11 123418339 123418444 -27365109 - L1MC4a LINE L1 -942 6866 6834 2810 143 37 21 chr11 123418444 123418813 -27364740 - L1MB2 LINE L1 0 6171 5790 324 0 0 0 chr11 123418813 123418849 -27364704 + (TG)n Simple_repeat Simple_repeat 2 37 0 2810 143 37 21 chr11 123418849 123418991 -27364562 - L1MB2 LINE L1 -381 5790 5652 294 95 0 0 chr11 123419118 123419160 -27364393 + (A)n Simple_repeat Simple_repeat 1 42 0 2213 102 0 23 chr11 123419191 123419494 -27364059 + AluSx SINE Alu 1 296 -16 1048 191 158 0 chr11 123419502 123419717 -27363836 + MER44D DNA MER2_type 83 331 -374 835 176 0 0 chr11 123419720 123419851 -27363702 + MER44D DNA MER2_type 600 602 -3 200 241 19 19 chr11 123419990 123420044 -27363509 + L2 LINE L2 3219 3272 0 327 25 0 0 chr11 123420757 123420797 -27362756 + (TG)n Simple_repeat Simple_repeat 2 41 0 1788 165 10 16 chr11 123420798 123421101 -27362452 - AluJb SINE Alu -11 301 1 849 152 30 0 chr11 123421392 123421524 -27362029 - AluSg/x SINE Alu -68 242 107 434 250 0 0 chr11 123421582 123421666 -27361887 - FLAM_A SINE Alu -58 84 1 413 268 39 24 chr11 123421670 123421797 -27361756 + L2 LINE L2 3141 3269 -3 247 258 15 0 chr11 123424152 123424218 -27359335 + GA-rich Low_complexity Low_complexity 2 68 0 357 82 0 0 chr11 123425535 123425584 -27357969 + (CA)n Simple_repeat Simple_repeat 1 49 0 315 0 0 0 chr11 123425689 123425724 -27357829 + (CA)n Simple_repeat Simple_repeat 2 36 0 235 260 0 39 chr11 123425856 123425933 -27357620 + GA-rich Low_complexity Low_complexity 2 75 0 210 262 131 24 chr11 123426356 123426440 -27357113 - MIR SINE MIR -68 140 48 332 337 56 61 chr11 123427198 123427394 -27356159 - MIR3 SINE MIR 0 208 14 707 205 55 24 chr11 123427524 123427691 -27355862 + MER3 DNA MER1_type 1 123 -86 504 254 278 0 chr11 123428284 123428489 -27355064 - MIR SINE MIR 0 262 1 359 125 0 163 chr11 123428858 123428938 -27354615 - Alu SINE Alu 0 302 236 1159 149 11 0 chr11 123428959 123429134 -27354419 + AluJb SINE Alu 120 296 -16 2140 98 3 23 chr11 123429137 123429444 -27354109 + AluSp SINE Alu 3 303 -10 1512 40 0 6 chr11 123429960 123430137 -27353416 - AluY SINE Alu -7 304 129 2182 104 3 23 chr11 123430232 123430541 -27353012 + AluSx SINE Alu 1 303 -9 189 0 0 0 chr11 123430677 123430698 -27352855 + (A)n Simple_repeat Simple_repeat 1 21 0 2092 98 25 0 chr11 123431051 123431358 -27352195 - AluSx SINE Alu 0 314 1 1682 131 6 100 chr11 123431379 123431572 -27351981 - AluJb SINE Alu -22 290 137 2389 109 0 0 chr11 123431572 123431885 -27351668 + AluSq SINE Alu 1 313 0 1682 131 6 100 chr11 123431885 123432011 -27351542 - AluJb SINE Alu -175 137 1 1124 109 0 7 chr11 123432238 123432385 -27351168 + AluSc SINE Alu 92 237 -72 300 305 86 0 chr11 123432390 123432541 -27351012 + L1ME4a LINE L1 5946 6109 -12 1087 174 0 0 chr11 123433120 123433292 -27350261 - FRAM SINE Alu -7 169 1 1952 84 56 21 chr11 123433530 123433816 -27349737 - AluSx SINE Alu -16 296 1 2169 76 7 23 chr11 123433943 123434247 -27349306 - AluSq SINE Alu -14 299 1 566 107 0 0 chr11 123434247 123434322 -27349231 - 5S rRNA rRNA -42 79 5 1129 66 0 0 chr11 123434322 123434458 -27349095 - AluSq/x SINE Alu -176 136 1 278 263 12 0 chr11 123434781 123434861 -27348692 + L1ME LINE L1 5319 5399 -2409 1391 135 8 62 chr11 123434876 123435120 -27348433 + AluJb SINE Alu 1 231 -81 533 286 44 48 chr11 123435143 123435408 -27348145 + L1ME LINE L1 5443 5665 -456 292 312 115 13 chr11 123435409 123435566 -27347987 - MIR SINE MIR -10 252 80 233 203 94 0 chr11 123435663 123435727 -27347826 + L1ME LINE L1 5836 5905 -216 654 174 0 0 chr11 123435768 123435860 -27347693 + AluJ/FLAM SINE Alu 2 93 -219 1755 122 0 20 chr11 123435961 123436215 -27347338 - AluSq SINE Alu -64 249 1 25 0 0 0 chr11 123436290 123436315 -27347238 + AT_rich Low_complexity Low_complexity 1 25 0 1975 144 3 0 chr11 123436397 123436688 -27346865 + AluSx SINE Alu 1 292 -20 189 0 0 0 chr11 123436688 123436709 -27346844 + (GA)n Simple_repeat Simple_repeat 2 22 0 2338 93 0 19 chr11 123437643 123437956 -27345597 + AluSc SINE Alu 1 307 -2 25 31 0 0 chr11 123439001 123439033 -27344520 + AT_rich Low_complexity Low_complexity 1 32 0 3877 49 0 0 chr11 123439683 123440128 -27343425 + L1PA7 LINE L1 5706 6150 -4 265 306 20 20 chr11 123440389 123440487 -27343066 + L2 LINE L2 2962 3059 -213 856 275 57 145 chr11 123440729 123440961 -27342592 + L1M4 LINE L1 3520 3771 -2375 1784 150 7 7 chr11 123440961 123441241 -27342312 + AluJo SINE Alu 12 291 -21 856 275 57 145 chr11 123441241 123441521 -27342032 + L1M4 LINE L1 3771 4074 -2072 2486 77 0 10 chr11 123441521 123441832 -27341721 + AluSc SINE Alu 1 308 -1 856 275 57 145 chr11 123441832 123442762 -27340791 + L1M4 LINE L1 4074 4836 -1310 2230 159 0 33 chr11 123442857 123443248 -27340305 - L1MB2 LINE L1 -7 6164 5787 339 191 16 0 chr11 123443250 123443313 -27340240 - MER34 LTR ERV1 -4 538 475 813 99 116 16 chr11 123443625 123443746 -27339807 - FLAM_C SINE Alu 0 133 1 2450 76 0 3 chr11 123443922 123444224 -27339329 - AluY SINE Alu -10 301 1 23 33 0 0 chr11 123445982 123446012 -27337541 + AT_rich Low_complexity Low_complexity 1 30 0 2129 116 0 0 chr11 123446086 123446380 -27337173 - AluSc SINE Alu -15 294 1 2168 109 16 3 chr11 123446388 123446691 -27336862 - AluSx SINE Alu -5 307 1 392 314 47 24 chr11 123446727 123446896 -27336657 - MER5A DNA MER1_type -2 187 15 479 260 91 0 chr11 123447604 123447758 -27335795 + L2 LINE L2 2235 2402 -912 217 132 0 26 chr11 123447760 123447798 -27335755 + (TCC)n Simple_repeat Simple_repeat 3 39 0 516 168 24 16 chr11 123447798 123447923 -27335630 + CT-rich Low_complexity Low_complexity 2 127 0 590 172 115 25 chr11 123447953 123448075 -27335478 - FLAM_A SINE Alu 0 133 1 1271 259 166 21 chr11 123448099 123448214 -27335339 + L2 LINE L2 2393 2490 -823 2012 161 3 0 chr11 123448214 123448513 -27335040 + AluJo SINE Alu 1 300 -12 1271 259 166 21 chr11 123448513 123449080 -27334473 + L2 LINE L2 2490 3168 -145 984 207 0 0 chr11 123449125 123449289 -27334264 + FRAM SINE Alu 2 165 -1 1691 141 61 0 chr11 123449539 123449802 -27333751 - AluSq SINE Alu -32 281 3 26 30 0 0 chr11 123450257 123450290 -27333263 + AT_rich Low_complexity Low_complexity 1 33 0 207 0 0 0 chr11 123450335 123450358 -27333195 + (A)n Simple_repeat Simple_repeat 1 23 0 913 80 7 51 chr11 123450592 123450730 -27332823 + AluSp SINE Alu 1 132 -181 2120 95 37 0 chr11 123450733 123451027 -27332526 + AluSp SINE Alu 1 305 -8 282 388 68 41 chr11 123451117 123451457 -27332096 + L2 LINE L2 2899 3247 -25 267 262 159 0 chr11 123451732 123451839 -27331714 - L2 LINE L2 0 3272 3149 67 49 0 0 chr11 123451996 123452098 -27331455 + AT_rich Low_complexity Low_complexity 1 102 0 1642 159 13 58 chr11 123452135 123452443 -27331110 + AluSx SINE Alu 1 294 -18 308 135 0 39 chr11 123452526 123452578 -27330975 + Alu SINE Alu 1 50 -252 1333 197 48 3 chr11 123452766 123453060 -27330493 - Charlie4a DNA MER1_type -159 349 43 1988 116 53 3 chr11 123454354 123454638 -27328915 - AluSx SINE Alu -14 298 1 836 174 97 5 chr11 123454722 123454917 -27328636 + AluJo SINE Alu 87 299 -13 26 88 0 0 chr11 123454969 123455037 -27328516 + AT_rich Low_complexity Low_complexity 1 68 0 929 306 65 23 chr11 123455965 123456393 -27327160 - MLT1J LTR MaLR 0 511 66 1467 318 95 37 chr11 123456399 123457349 -27326204 - L2 LINE L2 -605 2709 1705 686 290 104 28 chr11 123457375 123457837 -27325716 - L1ME4a LINE L1 -4 6117 5621 197 320 40 32 chr11 123458000 123458125 -27325428 - L2 LINE L2 -1912 1402 1277 274 395 44 24 chr11 123458229 123458525 -27325028 - L2 LINE L2 -2230 1084 783 1089 169 11 28 chr11 123459135 123459312 -27324241 + FAM SINE Alu 2 175 0 23 0 0 0 chr11 123459441 123459464 -27324089 + AT_rich Low_complexity Low_complexity 1 23 0 1786 116 0 41 chr11 123459564 123459831 -27323722 - AluSx SINE Alu -19 293 38 279 128 0 0 chr11 123459933 123459972 -27323581 - AluSx SINE Alu -262 39 1 25 75 0 0 chr11 123460310 123460363 -27323190 + AT_rich Low_complexity Low_complexity 1 53 0 546 199 0 155 chr11 123461580 123461650 -27321903 - MER69A DNA AcHobo -2352 174 95 2492 70 3 0 chr11 123461650 123461950 -27321603 + AluSp SINE Alu 1 301 -12 546 199 0 155 chr11 123461950 123462085 -27321468 - MER69A DNA AcHobo -2431 95 1 2092 131 0 10 chr11 123462242 123462540 -27321013 + AluSx SINE Alu 1 295 -17 229 188 94 31 chr11 123462677 123462741 -27320812 - LTR66 LTR ERVL -177 433 366 201 74 0 0 chr11 123462812 123462839 -27320714 + (A)n Simple_repeat Simple_repeat 1 27 0 2631 61 0 0 chr11 123463096 123463407 -27320146 - AluY SINE Alu 0 311 1 1873 146 3 48 chr11 123464319 123464635 -27318918 + AluJo SINE Alu 1 302 -10 2049 128 0 3 chr11 123465285 123465599 -27317954 + AluSp SINE Alu 2 314 0 225 0 0 0 chr11 123465766 123465791 -27317762 + (TAAAA)n Simple_repeat Simple_repeat 4 28 0 27 29 0 0 chr11 123465838 123465872 -27317681 + AT_rich Low_complexity Low_complexity 1 34 0 1999 204 74 62 chr11 123466034 123466599 -27316954 + L1MB7 LINE L1 3756 4327 -1819 985 176 0 0 chr11 123466617 123466776 -27316777 + FAM SINE Alu 10 168 -17 3137 211 39 34 chr11 123466786 123467331 -27316222 + L1MB7 LINE L1 4327 4879 -1267 2098 127 0 0 chr11 123467331 123467614 -27315939 + AluSx SINE Alu 1 283 -29 3137 211 39 34 chr11 123467614 123467894 -27315659 + L1MB7 LINE L1 4879 5156 -990 446 209 12 0 chr11 123467912 123467998 -27315555 + L1MD2 LINE L1 6258 6344 -15 1128 161 58 15 chr11 123468001 123468206 -27315347 - AluJo SINE Alu -14 298 85 230 139 23 0 chr11 123468231 123468274 -27315279 + L1MB7 LINE L1 5158 5201 -945 2112 139 7 0 chr11 123468275 123468679 -27314874 + AluSx SINE Alu 1 406 0 3572 187 52 50 chr11 123468681 123469061 -27314492 + L1MB7 LINE L1 5193 5571 -613 1909 139 0 11 chr11 123469061 123469374 -27314179 - AluSx SINE Alu 0 310 1 3572 187 52 50 chr11 123469374 123469875 -27313678 + L1MB7 LINE L1 5571 6066 -118 1983 128 20 7 chr11 123469875 123470172 -27313381 + AluJo SINE Alu 1 301 -11 3572 187 52 50 chr11 123470172 123470291 -27313262 + L1MB7 LINE L1 6066 6183 -1 382 283 46 7 chr11 123470333 123470485 -27313068 - L1ME4a LINE L1 -2 6119 5962 30 0 0 0 chr11 123470727 123470757 -27312796 + AT_rich Low_complexity Low_complexity 1 30 0 307 283 26 66 chr11 123470757 123470909 -27312644 - LTR16C LTR ERVL -21 470 325 1754 154 3 28 chr11 123471117 123471402 -27312151 + AluSg SINE Alu 1 278 -32 1088 48 28 25 chr11 123471409 123471765 -27311788 + (GAAA)n Simple_repeat Simple_repeat 1 357 0 920 124 22 67 chr11 123471852 123471966 -27311587 - MER104 DNA Tc2 -1723 175 70 2883 12 0 6 chr11 123471966 123472285 -27311268 - AluYb8 SINE Alu -1 317 1 920 124 22 67 chr11 123472285 123472348 -27311205 - MER104 DNA Tc2 -1828 70 6 924 186 6 6 chr11 123472830 123472991 -27310562 + AluJb SINE Alu 136 296 -16 695 69 20 0 chr11 123473043 123473144 -27310409 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 1780 190 0 3 chr11 123473146 123473441 -27310112 - AluJo SINE Alu -18 294 1 432 242 156 8 chr11 123473622 123473750 -27309803 + MIR SINE MIR 83 229 -33 2888 16 0 0 chr11 123473782 123474097 -27309456 + AluYb8 SINE Alu 1 315 -3 198 0 0 0 chr11 123474440 123474462 -27309091 + (CA)n Simple_repeat Simple_repeat 1 22 0 2019 117 3 7 chr11 123474745 123475035 -27308518 + AluSx SINE Alu 24 312 0 24 0 0 0 chr11 123475199 123475223 -27308330 + AT_rich Low_complexity Low_complexity 1 24 0 212 301 128 38 chr11 123475353 123475486 -27308067 - L2 LINE L2 -168 3104 2960 1566 218 29 64 chr11 123475964 123476337 -27307216 + MER41B LTR ERV1 100 484 -2 2109 120 3 0 chr11 123476337 123476621 -27306932 + AluSx SINE Alu 1 285 -27 276 30 0 0 chr11 123476621 123476654 -27306899 + (CA)n Simple_repeat Simple_repeat 2 34 0 1566 218 29 64 chr11 123476654 123476852 -27306701 + MER41B LTR ERV1 273 476 -10 413 254 181 23 chr11 123476925 123477102 -27306451 + MLT1K LTR MaLR 190 394 -194 1360 126 0 5 chr11 123477220 123477410 -27306143 - AluSg/x SINE Alu -37 275 87 459 231 28 107 chr11 123477482 123477613 -27305940 - MER69 DNA AcHobo 0 2526 2417 2347 101 0 0 chr11 123477613 123477911 -27305642 + AluSq SINE Alu 1 298 -15 459 231 28 107 chr11 123477911 123477995 -27305558 - MER69 DNA AcHobo -109 2417 2328 1876 162 0 13 chr11 123478022 123478330 -27305223 - AluJb SINE Alu -8 304 1 1188 255 42 9 chr11 123478358 123478695 -27304858 - L1ME1 LINE L1 -18 6148 5801 1821 274 32 63 chr11 123478695 123479687 -27303866 + L2 LINE L2 2367 3312 -1 1928 149 0 13 chr11 123480555 123480863 -27302690 - AluSx SINE Alu -8 304 1 1262 303 103 16 chr11 123480892 123481102 -27302451 - L2 LINE L2 -1 3312 3122 2236 114 3 0 chr11 123481102 123481408 -27302145 + AluSg SINE Alu 1 307 -3 1262 303 103 16 chr11 123481408 123481996 -27301557 - L2 LINE L2 -191 3122 2438 2163 110 7 0 chr11 123482160 123482450 -27301103 + AluSg SINE Alu 5 296 -14 280 172 8 142 chr11 123482731 123482851 -27300702 - MIR SINE MIR -81 127 56 1765 142 34 24 chr11 123483058 123483353 -27300200 + AluJo SINE Alu 1 298 -14 388 221 42 63 chr11 123483386 123483481 -27300072 - L2 LINE L2 -21 3292 3200 480 150 60 30 chr11 123483603 123483703 -27299850 - L1 LINE L1 -1842 4304 4202 * 1141 148 41 57 chr11 123483673 123483917 -27299636 + L1MA9 LINE L1 6051 6290 -22 34 65 0 0 chr11 123484023 123484085 -27299468 + AT_rich Low_complexity Low_complexity 1 62 0 1684 79 0 9 chr11 123484364 123484579 -27298974 - AluSc SINE Alu -96 213 1 1039 181 0 0 chr11 123484619 123484785 -27298768 + FRAM SINE Alu 1 163 -13 1596 226 48 22 chr11 123484788 123485203 -27298350 + LTR37A LTR ERV1 1 426 0 3512 181 36 15 chr11 123485396 123486027 -27297526 - MER67C LTR ERV1 -2 708 60 1920 117 0 45 chr11 123486027 123486378 -27297175 - AluSg1 SINE Alu 0 339 2 3512 181 36 15 chr11 123486378 123486419 -27297134 - MER67C LTR ERV1 -650 60 21 2196 58 41 27 chr11 123487783 123488077 -27295476 - AluY SINE Alu -13 298 1 252 0 0 0 chr11 123488772 123488800 -27294753 + (CA)n Simple_repeat Simple_repeat 1 28 0 2158 88 47 24 chr11 123488967 123489263 -27294290 - AluSx SINE Alu -9 303 1 415 195 35 35 chr11 123489269 123489356 -27294197 + L2 LINE L2 3186 3272 0 1835 143 7 20 chr11 123489513 123489813 -27293740 + AluJb SINE Alu 1 296 -16 22 0 0 0 chr11 123489813 123489835 -27293718 + AT_rich Low_complexity Low_complexity 1 22 0 2169 134 0 10 chr11 123490608 123490914 -27292639 - AluSx SINE Alu -9 303 1 22 35 0 0 chr11 123491059 123491088 -27292465 + AT_rich Low_complexity Low_complexity 1 29 0 2420 81 7 7 chr11 123491088 123491395 -27292158 + AluSc SINE Alu 1 307 -2 2286 151 19 19 chr11 123491402 123491766 -27291787 + THE1B LTR MaLR 1 364 0 2029 164 29 3 chr11 123491766 123492113 -27291440 + L1MB3 LINE L1 5820 6175 -8 249 213 75 21 chr11 123492140 123492234 -27291319 - L1MC5 LINE L1 -78 7883 7785 2125 135 0 3 chr11 123492435 123492739 -27290814 - AluSx SINE Alu -9 303 1 370 297 23 0 chr11 123492915 123493043 -27290510 + L1ME LINE L1 5561 5691 -430 547 282 55 6 chr11 123493312 123493493 -27290060 + MLT1L LTR MaLR 345 534 -81 324 282 35 21 chr11 123493575 123493717 -27289836 - L1ME LINE L1 -328 5793 5650 2082 105 3 7 chr11 123493746 123494068 -27289485 - AluSq SINE Alu 0 321 1 1241 167 5 0 chr11 123494567 123494765 -27288788 + AluJo SINE Alu 86 284 -28 207 100 0 0 chr11 123495083 123495113 -27288440 + (T)n Simple_repeat Simple_repeat 1 30 0 369 0 0 0 chr11 123495362 123495403 -27288150 + (TC)n Simple_repeat Simple_repeat 2 42 0 279 0 0 0 chr11 123495402 123495433 -27288120 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 180 0 0 0 chr11 123495534 123495554 -27287999 + (A)n Simple_repeat Simple_repeat 1 20 0 3202 151 32 5 chr11 123495559 123496115 -27287438 - L1MB7 LINE L1 -271 5913 5343 409 278 74 45 chr11 123496119 123496295 -27287258 - L2 LINE L2 -604 2710 2530 1114 140 0 0 chr11 123496318 123496496 -27287057 - L1PA8 LINE L1 0 6172 5995 2136 95 3 3 chr11 123496512 123496796 -27286757 - AluSg SINE Alu -25 285 2 228 292 31 15 chr11 123497615 123497680 -27285873 + MIR SINE MIR 38 103 -105 26 0 0 0 chr11 123498802 123498828 -27284725 + AT_rich Low_complexity Low_complexity 1 26 0 1715 173 3 23 chr11 123502380 123502687 -27280866 + AluJo SINE Alu 1 301 -11 2169 95 7 0 chr11 123504254 123504538 -27279015 + AluSx SINE Alu 1 286 -26 896 141 0 22 chr11 123504825 123504960 -27278593 - FLAM_A SINE Alu -1 132 1 322 305 59 8 chr11 123505166 123505284 -27278269 - L2 LINE L2 0 3272 3149 28 0 0 0 chr11 123506991 123507019 -27276534 + AT_rich Low_complexity Low_complexity 1 28 0 5649 47 94 6 chr11 123507019 123508189 -27275364 - SVA Other Other -955 1382 1 1697 97 0 9 chr11 123508455 123508683 -27274870 + AluSg/x SINE Alu 80 305 -5 1694 174 79 30 chr11 123509515 123509883 -27273670 - MSTB LTR MaLR 0 426 41 402 111 0 0 chr11 123510631 123510685 -27272868 - MSTB LTR MaLR -372 54 1 1161 154 0 0 chr11 123511646 123511821 -27271732 - AluSg/x SINE Alu -3 309 135 1780 151 7 21 chr11 123511821 123512112 -27271441 - AluJb SINE Alu -19 293 7 1797 115 56 40 chr11 123512124 123512428 -27271125 - AluSx SINE Alu -3 309 1 449 115 0 0 chr11 123512453 123512514 -27271039 + Alu SINE Alu 235 295 -17 860 142 71 16 chr11 123512534 123512717 -27270836 - L1MA8 LINE L1 -20 6271 6079 772 62 72 0 chr11 123512735 123512832 -27270721 - U6 snRNA snRNA -3 104 1 2145 100 10 3 chr11 123513019 123513319 -27270234 + AluSx SINE Alu 3 304 -8 1790 167 3 22 chr11 123513940 123514257 -27269296 - AluJo SINE Alu -1 311 1 22 0 0 0 chr11 123514658 123514680 -27268873 + AT_rich Low_complexity Low_complexity 1 22 0 2318 83 0 0 chr11 123514680 123514969 -27268584 - AluY SINE Alu -15 296 8 2305 103 0 7 chr11 123515008 123515310 -27268243 - AluSx SINE Alu -12 300 1 2222 90 7 13 chr11 123515723 123516024 -27267529 - AluSp SINE Alu -12 301 3 593 298 102 14 chr11 123516426 123516651 -27266902 + L1M4 LINE L1 2153 2357 -3789 1585 174 17 33 chr11 123516651 123516950 -27266603 + AluJo SINE Alu 1 294 -18 593 298 102 14 chr11 123516950 123517281 -27266272 + L1M4 LINE L1 2357 2758 -3388 2552 176 78 21 chr11 123517309 123517825 -27265728 + L1M2 LINE L1 1 545 -6304 4821 90 9 2 chr11 123517827 123518459 -27265094 - Charlie3 DNA MER1_type -352 2358 1722 2364 84 3 0 chr11 123518459 123518755 -27264798 + AluSc SINE Alu 1 297 -12 2568 57 3 0 chr11 123518855 123519154 -27264399 - AluSp SINE Alu -13 300 1 531 242 5 81 chr11 123519628 123519814 -27263739 - MIR SINE MIR -14 248 77 321 263 0 0 chr11 123520129 123520209 -27263344 + MIR3 SINE MIR 120 199 -9 549 113 0 25 chr11 123520418 123520498 -27263055 - AluJ/FRAM SINE Alu -14 298 221 2243 106 0 0 chr11 123520837 123521139 -27262414 - AluSx SINE Alu -10 302 1 2398 97 0 3 chr11 123521203 123521511 -27262042 + AluSx SINE Alu 1 307 -5 33 25 0 0 chr11 123521770 123521810 -27261743 + AT_rich Low_complexity Low_complexity 1 40 0 615 291 59 35 chr11 123522522 123522776 -27260777 + MIR SINE MIR 3 262 0 215 305 183 42 chr11 123522901 123523114 -27260439 - MIR SINE MIR -18 244 2 452 235 268 0 chr11 123523736 123523889 -27259664 + MIR SINE MIR 3 196 -66 778 285 37 59 chr11 123524046 123524240 -27259313 - L2 LINE L2 -244 3069 2872 2387 64 3 7 chr11 123524240 123524538 -27259015 + AluY SINE Alu 1 297 -14 778 285 37 59 chr11 123524538 123524753 -27258800 - L2 LINE L2 -441 2872 2667 2224 165 0 3 chr11 123526304 123526649 -27256904 + MER2 DNA MER2_type 1 344 0 1975 128 6 35 chr11 123526833 123527146 -27256407 - AluSx SINE Alu -8 304 1 455 113 0 0 chr11 123527171 123527233 -27256320 + Alu SINE Alu 235 296 -16 871 147 65 16 chr11 123527253 123527437 -27256116 - L1MA8 LINE L1 -20 6271 6079 772 62 72 0 chr11 123527455 123527552 -27256001 - U6 snRNA snRNA -3 104 1 2145 100 10 3 chr11 123527739 123528039 -27255514 + AluSx SINE Alu 3 304 -8 1790 167 3 22 chr11 123528660 123528977 -27254576 - AluJo SINE Alu -1 311 1 22 0 0 0 chr11 123529378 123529400 -27254153 + AT_rich Low_complexity Low_complexity 1 22 0 2363 76 0 0 chr11 123529400 123529688 -27253865 - AluY SINE Alu -16 295 8 2305 103 0 7 chr11 123529727 123530029 -27253524 - AluSx SINE Alu -12 300 1 2143 113 0 13 chr11 123530442 123530744 -27252809 - AluSg SINE Alu -12 298 1 2457 63 0 10 chr11 123530744 123531046 -27252507 - AluY SINE Alu -12 299 1 2346 90 0 7 chr11 123531046 123531347 -27252206 - AluSx SINE Alu -13 299 1 752 242 47 71 chr11 123531394 123531654 -27251899 - L1MC4a LINE L1 -1868 5940 5688 2332 101 0 3 chr11 123531654 123531961 -27251592 - AluSg SINE Alu -4 306 1 752 242 47 71 chr11 123531961 123532022 -27251531 - L1MC4a LINE L1 -2120 5688 5627 241 97 0 0 chr11 123532157 123532188 -27251365 + MER103 DNA DNA 2 32 -134 292 308 13 90 chr11 123532929 123533096 -27250457 - MIR3 SINE MIR -70 138 1 265 286 52 13 chr11 123534139 123534216 -27249337 + MIR3 SINE MIR 2 81 -127 395 300 62 71 chr11 123534815 123535055 -27248498 + MIR SINE MIR 15 252 -10 1968 127 45 3 chr11 123535061 123535352 -27248201 + AluSx SINE Alu 1 303 -9 318 206 0 0 chr11 123535352 123535425 -27248128 + (CATA)n Simple_repeat Simple_repeat 1 73 0 299 233 11 11 chr11 123535425 123535515 -27248038 - L1MC4 LINE L1 -1339 6703 6614 * 323 267 0 0 chr11 123535437 123535527 -27248026 + L1MC4 LINE L1 6614 6703 -1339 431 194 10 0 chr11 123535528 123535626 -27247927 + (TA)n Simple_repeat Simple_repeat 2 100 0 353 282 60 27 chr11 123535765 123535914 -27247639 - L2 LINE L2 -46 3267 3114 2322 98 3 0 chr11 123537525 123537821 -27245732 + AluSx SINE Alu 1 297 -15 1495 95 0 38 chr11 123538289 123538500 -27245053 - AluSq SINE Alu -18 295 93 535 304 83 31 chr11 123538803 123539129 -27244424 + L2 LINE L2 1669 2011 -1303 288 326 54 0 chr11 123539155 123539247 -27244306 - L2 LINE L2 -4 3268 3172 355 317 43 70 chr11 123539273 123539491 -27244062 + L2 LINE L2 2067 2276 -1038 2135 97 37 3 chr11 123539491 123539790 -27243763 - AluSx SINE Alu -3 309 1 355 317 43 70 chr11 123539790 123539871 -27243682 + L2 LINE L2 2276 2358 -956 268 380 88 9 chr11 123539889 123540105 -27243448 + MIR SINE MIR 20 252 -10 196 310 90 0 chr11 123540110 123540210 -27243343 + L2 LINE L2 1728 1836 -1478 2016 145 46 77 chr11 123540296 123540539 -27243014 + L1M4 LINE L1 4890 5139 -1007 1933 126 58 0 chr11 123540539 123540816 -27242737 + AluSx SINE Alu 1 293 -19 2140 112 3 0 chr11 123540823 123541119 -27242434 + AluSx SINE Alu 14 310 -2 2016 145 46 77 chr11 123541119 123541363 -27242190 + L1M4 LINE L1 5145 5370 -776 2674 55 3 0 chr11 123541469 123541780 -27241773 - AluSp SINE Alu -1 312 1 530 257 5 86 chr11 123542255 123542442 -27241111 - MIR SINE MIR -14 248 77 321 263 0 0 chr11 123542757 123542837 -27240716 + MIR3 SINE MIR 120 199 -9 543 114 0 25 chr11 123543046 123543125 -27240428 - AluJ/FRAM SINE Alu -15 297 221 2243 106 0 0 chr11 123543464 123543766 -27239787 - AluSx SINE Alu -10 302 1 2412 94 0 3 chr11 123543830 123544138 -27239415 + AluSx SINE Alu 1 307 -5 33 25 0 0 chr11 123544397 123544437 -27239116 + AT_rich Low_complexity Low_complexity 1 40 0 615 291 59 35 chr11 123545149 123545403 -27238150 + MIR SINE MIR 3 262 0 215 305 183 42 chr11 123545528 123545741 -27237812 - MIR SINE MIR -18 244 2 452 235 268 0 chr11 123546364 123546517 -27237036 + MIR SINE MIR 3 196 -66 778 285 37 59 chr11 123546674 123546868 -27236685 - L2 LINE L2 -244 3069 2872 2422 64 3 3 chr11 123546868 123547165 -27236388 + AluY SINE Alu 1 297 -14 778 285 37 59 chr11 123547165 123547380 -27236173 - L2 LINE L2 -441 2872 2667 2190 171 0 3 chr11 123548931 123549276 -27234277 + MER2 DNA MER2_type 1 344 0 1681 124 8 0 chr11 123549460 123549702 -27233851 - AluSx SINE Alu -8 304 61 1929 165 0 7 chr11 123550018 123550321 -27233232 + AluJb SINE Alu 1 301 -11 2111 113 0 17 chr11 123550673 123550973 -27232580 + AluSg SINE Alu 1 295 -15 5957 195 64 107 chr11 123551305 123551705 -27231848 - L1M4 LINE L1 -905 5241 4825 10405 76 3 2 chr11 123551705 123553816 -27229737 - L1PA7 LINE L1 0 6154 4074 2107 129 0 0 chr11 123553817 123554104 -27229449 - AluSx SINE Alu -25 287 1 5957 195 64 107 chr11 123554104 123554240 -27229313 - L1M4 LINE L1 -1321 4825 4685 1873 71 0 0 chr11 123554240 123554464 -27229089 - AluY SINE Alu -3 308 85 5957 195 64 107 chr11 123554464 123554857 -27228696 - L1M4 LINE L1 -1461 4685 4277 489 146 22 0 chr11 123554857 123554946 -27228607 - HY1 scRNA scRNA -1 111 21 5957 195 64 107 chr11 123554946 123556073 -27227480 - L1M4 LINE L1 -1869 4277 3185 394 237 35 9 chr11 123556064 123556178 -27227375 + L1M4 LINE L1 2926 3042 -3104 * 1233 107 0 0 chr11 123556305 123556464 -27227089 + L1PA10 LINE L1 6006 6164 -4 231 61 0 0 chr11 123556820 123556853 -27226700 + (TTTTTG)n Simple_repeat Simple_repeat 1 33 0 837 158 0 0 chr11 123556856 123556983 -27226570 - FLAM_C SINE Alu -16 127 1 429 298 82 1 chr11 123557204 123557374 -27226179 - MIR SINE MIR -66 196 16 2559 207 91 94 chr11 123557408 123557549 -27226004 - MER21B LTR ERV1 -1 862 722 180 0 0 0 chr11 123557549 123557569 -27225984 + (CAATT)n Simple_repeat Simple_repeat 2 21 0 2559 207 91 94 chr11 123557569 123558291 -27225262 - MER21B LTR ERV1 -141 722 1 2205 108 0 0 chr11 123558322 123558599 -27224954 + AluSq SINE Alu 14 290 -23 182 62 31 0 chr11 123558707 123558739 -27224814 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2063 118 0 7 chr11 123558742 123559022 -27224531 - AluSg SINE Alu -32 278 1 338 230 16 56 chr11 123559045 123559171 -27224382 - HAL1 LINE L1 -143 2364 2244 2043 112 0 37 chr11 123559296 123559592 -27223961 + AluSx SINE Alu 1 285 -27 28 29 0 0 chr11 123559592 123559627 -27223926 + AT_rich Low_complexity Low_complexity 1 35 0 1340 234 92 30 chr11 123559942 123560377 -27223176 - MLT1C LTR MaLR 0 467 6 2533 65 0 3 chr11 123560505 123560814 -27222739 - AluY SINE Alu -3 308 1 2198 116 0 7 chr11 123560814 123561115 -27222438 - AluSx SINE Alu -13 299 1 760 242 47 71 chr11 123561162 123561422 -27222131 - L1MC4a LINE L1 -1868 5940 5688 2332 101 0 3 chr11 123561422 123561729 -27221824 - AluSg SINE Alu -4 306 1 760 242 47 71 chr11 123561729 123561790 -27221763 - L1MC4a LINE L1 -2120 5688 5627 241 97 0 0 chr11 123561925 123561956 -27221597 + MER103 DNA DNA 2 32 -134 292 308 13 90 chr11 123562697 123562864 -27220689 - MIR3 SINE MIR -70 138 1 265 286 52 13 chr11 123563907 123563984 -27219569 + MIR3 SINE MIR 2 81 -127 395 300 62 71 chr11 123564583 123564823 -27218730 + MIR SINE MIR 15 252 -10 1968 127 45 3 chr11 123564829 123565120 -27218433 + AluSx SINE Alu 1 303 -9 318 206 0 0 chr11 123565120 123565193 -27218360 + (CATA)n Simple_repeat Simple_repeat 1 73 0 299 233 11 11 chr11 123565193 123565283 -27218270 - L1MC4 LINE L1 -1339 6703 6614 * 323 267 0 0 chr11 123565205 123565295 -27218258 + L1MC4 LINE L1 6614 6703 -1339 372 129 59 0 chr11 123565295 123565380 -27218173 + (TATG)n Simple_repeat Simple_repeat 4 93 0 1770 156 0 23 chr11 123565540 123565848 -27217705 - AluSx SINE Alu -11 301 1 297 0 0 0 chr11 123565926 123565959 -27217594 + (TG)n Simple_repeat Simple_repeat 1 33 0 2643 61 3 0 chr11 123565961 123566273 -27217280 - AluSp SINE Alu 0 313 1 530 257 5 86 chr11 123566748 123566935 -27216618 - MIR SINE MIR -14 248 77 321 263 0 0 chr11 123567250 123567330 -27216223 + MIR3 SINE MIR 120 199 -9 543 114 0 25 chr11 123567539 123567618 -27215935 - AluJ/FRAM SINE Alu -15 297 221 2243 106 0 0 chr11 123567957 123568259 -27215294 - AluSx SINE Alu -10 302 1 370 297 23 0 chr11 123568436 123568564 -27214989 + L1ME LINE L1 5561 5691 -430 547 282 55 6 chr11 123568833 123569014 -27214539 + MLT1L LTR MaLR 345 534 -81 324 282 35 21 chr11 123569096 123569238 -27214315 - L1ME LINE L1 -328 5793 5650 2082 105 3 7 chr11 123569267 123569589 -27213964 - AluSq SINE Alu 0 321 1 1267 162 5 0 chr11 123570088 123570286 -27213267 + AluJo SINE Alu 86 284 -28 207 100 0 0 chr11 123570605 123570635 -27212918 + (T)n Simple_repeat Simple_repeat 1 30 0 405 0 0 0 chr11 123570884 123570929 -27212624 + (TC)n Simple_repeat Simple_repeat 2 46 0 297 0 0 0 chr11 123570928 123570961 -27212592 + (TA)n Simple_repeat Simple_repeat 2 34 0 * 251 189 0 0 chr11 123571056 123571093 -27212460 + FRAM SINE Alu 73 109 -57 300 206 29 0 chr11 123571131 123571199 -27212354 + L1MCa LINE L1 1995 2064 -4362 688 230 64 16 chr11 123571203 123571390 -27212163 - AluSq SINE Alu -24 289 94 4158 206 19 23 chr11 123571622 123572001 -27211552 - L1MA9 LINE L1 -30 6282 5903 2356 98 3 0 chr11 123572001 123572307 -27211246 - AluSx SINE Alu -5 307 1 4158 206 19 23 chr11 123572307 123572608 -27210945 - L1MA9 LINE L1 -409 5903 5605 2786 119 13 59 chr11 123572608 123572825 -27210728 + Tigger2a DNA MER2_type 1 188 -2520 2162 109 27 0 chr11 123572825 123573118 -27210435 - AluSq SINE Alu -12 301 1 2786 119 13 59 chr11 123573118 123573355 -27210198 + Tigger2a DNA MER2_type 188 434 0 4158 206 19 23 chr11 123573355 123573588 -27209965 - L1MA9 LINE L1 -707 5605 5372 1700 171 6 16 chr11 123573597 123573912 -27209641 - AluJo SINE Alu 0 312 1 874 135 0 8 chr11 123573926 123574052 -27209501 - FLAM_C SINE Alu -18 125 1 278 119 0 0 chr11 123574056 123574098 -27209455 - L1MA9 LINE L1 -826 5357 5316 201 39 0 0 chr11 123574105 123574131 -27209422 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1168 149 89 41 chr11 123574237 123574553 -27209000 - SVA Other Other -573 813 483 423 100 0 0 chr11 123574559 123574629 -27208924 - L1MA9 LINE L1 -849 5331 5262 961 112 0 0 chr11 123574630 123574755 -27208798 + FLAM_C SINE Alu 1 125 -18 559 214 50 0 chr11 123574766 123574906 -27208647 - L1MA9 LINE L1 -874 5272 5126 * 1747 195 138 10 chr11 123574877 123575364 -27208189 - L1M4 LINE L1 -1495 4651 4103 22 35 0 0 chr11 123575406 123575435 -27208118 + AT_rich Low_complexity Low_complexity 1 29 0 282 327 24 18 chr11 123575455 123575620 -27207933 - L1M4 LINE L1 -942 5204 5039 1679 256 92 23 chr11 123575637 123576113 -27207440 - L1M4 LINE L1 -1302 4844 4293 2069 129 0 26 chr11 123576113 123576416 -27207137 - AluSx SINE Alu -17 295 1 1679 256 92 23 chr11 123576416 123576715 -27206838 - L1M4 LINE L1 -1853 4293 4016 3157 128 144 15 chr11 123577113 123577716 -27205837 - L1MC2 LINE L1 -5 6339 5659 1176 262 13 78 chr11 123577726 123578265 -27205288 - L1M4 LINE L1 -2145 4001 3498 343 251 153 71 chr11 123578266 123578567 -27204986 - L1ME LINE L1 -5201 918 604 1229 181 100 29 chr11 123578768 123578906 -27204647 + L1MD2 LINE L1 6004 6131 -228 231 36 0 0 chr11 123578906 123578934 -27204619 + (CA)n Simple_repeat Simple_repeat 2 29 0 1229 181 100 29 chr11 123578934 123579076 -27204477 + L1MD2 LINE L1 6131 6304 -55 * 4843 124 33 15 chr11 123579075 123579470 -27204083 - L1MB4 LINE L1 0 6180 5793 342 0 0 0 chr11 123579470 123579508 -27204045 + (CA)n Simple_repeat Simple_repeat 2 39 0 4843 124 33 15 chr11 123579508 123579903 -27203650 - L1MB4 LINE L1 -387 5793 5376 394 257 56 0 chr11 123579965 123580099 -27203454 - L1ME LINE L1 -5924 195 58 366 279 0 0 chr11 123580442 123580510 -27203043 - MER77 LTR ERV1 0 605 538 880 143 0 0 chr11 123580512 123580638 -27202915 + FLAM_C SINE Alu 1 126 -17 1853 228 72 61 chr11 123580658 123581184 -27202369 - MER77 LTR ERV1 -73 532 1 2480 84 3 0 chr11 123581290 123581599 -27201954 - AluSp SINE Alu -3 310 1 591 241 63 13 chr11 123581603 123581761 -27201792 + L2 LINE L2 3148 3313 0 2304 99 0 6 chr11 123582293 123582605 -27200948 - AluSx SINE Alu -2 310 1 2328 140 17 101 chr11 123583514 123583585 -27199968 - MSTB LTR MaLR 0 426 351 2281 117 0 0 chr11 123583585 123583893 -27199660 + AluSc SINE Alu 1 308 -1 2328 140 17 101 chr11 123583893 123584286 -27199267 - MSTB LTR MaLR -75 351 1 289 314 170 21 chr11 123584727 123584869 -27198684 - MIR SINE MIR -65 143 31 621 231 116 6 chr11 123584995 123585168 -27198385 + MER117 DNA MER1_type 6 197 0 241 257 44 147 chr11 123585422 123585508 -27198045 - L2 LINE L2 -15 3257 3188 1962 158 7 0 chr11 123585508 123585818 -27197735 - AluJb SINE Alu 0 312 1 241 257 44 147 chr11 123585818 123585867 -27197686 - L2 LINE L2 -84 3188 3136 1267 169 14 5 chr11 123586073 123586292 -27197261 + L1PA16 LINE L1 5945 6165 -1 4219 113 28 5 chr11 123587108 123587675 -27195878 - LTR19B LTR ERV1 0 580 1 500 335 164 15 chr11 123589442 123589848 -27193705 + L2 LINE L2 2784 3260 -12 1234 154 85 97 chr11 123591251 123591570 -27191983 - MLT1B LTR MaLR 0 390 76 22 0 0 0 chr11 123591623 123591645 -27191908 + AT_rich Low_complexity Low_complexity 1 22 0 281 314 12 0 chr11 123591784 123591870 -27191683 + MIR3 SINE MIR 82 168 -40 380 213 0 13 chr11 123592175 123592250 -27191303 + L2 LINE L2 3240 3313 0 7791 43 1 9 chr11 123592570 123594048 -27189505 + L1PA6 LINE L1 4684 6154 0 453 206 128 10 chr11 123594063 123594165 -27189388 - FLAM_A SINE Alu -17 116 3 21 36 0 0 chr11 123594715 123594743 -27188810 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 123594750 123594771 -27188782 + GC_rich Low_complexity Low_complexity 1 21 0 225 218 0 73 chr11 123595057 123595112 -27188441 + L2 LINE L2 3212 3262 -10 200 207 33 0 chr11 123595358 123595425 -27188128 + MIR SINE MIR 104 173 -62 2415 138 46 5 chr11 123595615 123596027 -27187526 - MSTB1 LTR MaLR 0 432 4 22 0 0 0 chr11 123596307 123596329 -27187224 + AT_rich Low_complexity Low_complexity 1 22 0 187 253 76 63 chr11 123596386 123596465 -27187088 + L2 LINE L2 3185 3264 -8 2235 104 16 0 chr11 123597550 123597858 -27185695 - AluSq SINE Alu 0 313 1 22 0 0 0 chr11 123599185 123599207 -27184346 + AT_rich Low_complexity Low_complexity 1 22 0 614 156 147 9 chr11 123599232 123599341 -27184212 - FLAM_C SINE Alu -18 125 2 490 333 44 0 chr11 123599510 123599669 -27183884 - MIR3 SINE MIR -10 198 33 245 128 21 0 chr11 123600061 123600108 -27183445 + G-rich Low_complexity Low_complexity 3 50 0 * 265 64 64 0 chr11 123600107 123600154 -27183399 + A-rich Low_complexity Low_complexity 3 52 0 685 89 44 11 chr11 123600317 123600433 -27183120 + FRAM SINE Alu 54 172 0 21 0 0 0 chr11 123601938 123601959 -27181594 + AT_rich Low_complexity Low_complexity 1 21 0 363 339 61 24 chr11 123603002 123603167 -27180386 - MIR SINE MIR -74 188 18 2306 84 3 3 chr11 123603234 123603530 -27180023 - AluSc SINE Alu -13 296 1 2150 129 0 3 chr11 123604365 123604674 -27178879 - AluSx SINE Alu -4 308 1 339 306 19 0 chr11 123605173 123605281 -27178272 - L2 LINE L2 -652 2662 2553 842 208 227 37 chr11 123605387 123605805 -27177748 - MLT1F LTR MaLR 0 542 60 191 36 36 0 chr11 123606621 123606649 -27176904 + (TA)n Simple_repeat Simple_repeat 2 30 0 2350 69 0 10 chr11 123606649 123606938 -27176615 - AluSq SINE Alu -27 286 1 1884 146 3 41 chr11 123607057 123607373 -27176180 + AluJb SINE Alu 1 304 -8 1055 298 89 48 chr11 123607609 123607726 -27175827 + L2 LINE L2 2308 2419 -894 2169 116 0 3 chr11 123607726 123608020 -27175533 - AluSx SINE Alu -19 293 1 1055 298 89 48 chr11 123608020 123608155 -27175398 + L2 LINE L2 2419 2547 -766 2184 112 0 25 chr11 123608155 123608469 -27175084 - AluSx SINE Alu -6 306 1 1055 298 89 48 chr11 123608469 123609186 -27174367 + L2 LINE L2 2547 3313 0 919 185 17 12 chr11 123609250 123609297 -27174256 - AluJo SINE Alu -138 174 129 399 41 0 0 chr11 123609297 123609346 -27174207 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 919 185 17 12 chr11 123609346 123609471 -27174082 - AluJo SINE Alu -183 129 1 774 211 37 53 chr11 123610148 123610338 -27173215 - MER41D LTR ERV1 -11 546 360 990 95 17 50 chr11 123610344 123610523 -27173030 + LTR36 LTR ERV1 1 173 -438 * 1183 104 5 108 chr11 123610522 123610648 -27172905 + LTR36 LTR ERV1 422 519 -92 2516 55 3 0 chr11 123610648 123610958 -27172595 - AluY SINE Alu 0 311 1 1183 104 5 108 chr11 123610958 123611043 -27172510 + LTR36 LTR ERV1 519 611 0 3570 60 27 0 chr11 123611069 123611518 -27172035 + L1PA7 LINE L1 5692 6152 -2 948 170 16 27 chr11 123611686 123611874 -27171679 - AluJb SINE Alu -20 292 107 9268 165 21 26 chr11 123611875 123613798 -27169755 + L1M1 LINE L1 2781 4694 -1452 785 245 0 0 chr11 123613798 123613957 -27169596 + AluJo SINE Alu 119 277 -35 324 0 0 0 chr11 123613958 123613994 -27169559 + (CA)n Simple_repeat Simple_repeat 1 36 0 3562 174 11 9 chr11 123614033 123615037 -27168516 + L1M1 LINE L1 4660 5661 -639 389 155 0 0 chr11 123615824 123615882 -27167671 + MER31A LTR ERV1 353 410 -75 315 0 0 0 chr11 123615989 123616047 -27167506 + (CA)n Simple_repeat Simple_repeat 1 93 0 315 0 0 0 chr11 123616047 123616082 -27167471 + (CA)n Simple_repeat Simple_repeat 2 36 0 2119 109 0 0 chr11 123617845 123618138 -27165415 + AluSx SINE Alu 19 311 -1 264 59 0 0 chr11 123618374 123618408 -27165145 + (T)n Simple_repeat Simple_repeat 1 34 0 3656 136 11 4 chr11 123618416 123618969 -27164584 + MER41D LTR ERV1 1 557 0 216 286 22 55 chr11 123619363 123619454 -27164099 + MIR SINE MIR 69 156 -106 2003 115 31 0 chr11 123619456 123619743 -27163810 + AluSx SINE Alu 1 296 -16 833 153 0 0 chr11 123619748 123619866 -27163687 - FLAM_C SINE Alu -15 118 1 352 350 8 17 chr11 123621155 123621275 -27162278 - L2 LINE L2 -43 3229 3111 527 133 64 10 chr11 123622344 123622753 -27160800 + (TG)n Simple_repeat Simple_repeat 1 431 0 643 87 66 12 chr11 123622771 123623116 -27160437 + (TG)n Simple_repeat Simple_repeat 1 363 0 577 174 33 16 chr11 123623651 123623772 -27159781 + L1ME4a LINE L1 5969 6091 -30 211 375 48 19 chr11 123623783 123623887 -27159666 + MIR SINE MIR 42 148 -60 259 288 189 18 chr11 123624279 123624390 -27159163 + MIR SINE MIR 3 132 -130 269 269 15 0 chr11 123624396 123624463 -27159090 - L2 LINE L2 -2 3311 3244 1878 174 0 0 chr11 123626180 123626490 -27157063 - AluSx SINE Alu 0 312 3 408 226 50 144 chr11 123626891 123627072 -27156481 + MIR SINE MIR 2 165 -97 632 228 56 19 chr11 123627126 123627288 -27156265 + MIR SINE MIR 3 170 -92 361 342 67 1 chr11 123627420 123627569 -27155984 + MIR SINE MIR 23 176 -63 2004 146 3 3 chr11 123627664 123627973 -27155580 + AluSx SINE Alu 1 309 -3 4194 181 13 54 chr11 123628839 123629353 -27154200 + L1MB7 LINE L1 543 1077 -5465 489 34 0 0 chr11 123629353 123629412 -27154141 + (TG)n Simple_repeat Simple_repeat 2 60 0 1674 173 28 0 chr11 123629413 123629702 -27153851 - AluJo SINE Alu -15 297 1 4194 181 13 54 chr11 123629702 123630110 -27153443 + L1MB7 LINE L1 1076 1429 -5113 256 163 0 0 chr11 123630108 123630157 -27153396 + L1MB7 LINE L1 4916 4964 -1680 * 4064 161 43 17 chr11 123630166 123630679 -27152874 + L1MB7 LINE L1 5169 5667 -1015 2293 92 0 0 chr11 123630679 123630974 -27152579 + AluSx SINE Alu 1 295 -17 4064 161 43 17 chr11 123630974 123631721 -27151832 + L1MB7 LINE L1 5667 6461 -221 1191 143 106 34 chr11 123631762 123631999 -27151554 + L1MB7 LINE L1 6423 6676 -6 201 342 67 0 chr11 123632081 123632201 -27151352 + MIR SINE MIR 89 216 -46 702 230 0 7 chr11 123632201 123632336 -27151217 + FLAM_A SINE Alu 2 135 -7 207 176 0 0 chr11 123632406 123632440 -27151113 + CT-rich Low_complexity Low_complexity 3 36 0 484 206 0 15 chr11 123632976 123633084 -27150469 - MER5A DNA MER1_type -80 109 4 475 311 85 6 chr11 123633466 123633643 -27149910 + MIR SINE MIR 20 210 -52 489 302 34 42 chr11 123633977 123634177 -27149376 - MIR3 SINE MIR -15 193 16 231 36 0 0 chr11 123637099 123637127 -27146426 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 22 35 0 0 chr11 123637941 123637970 -27145583 + AT_rich Low_complexity Low_complexity 1 29 0 2235 81 14 0 chr11 123638077 123638372 -27145181 - AluSx SINE Alu -13 299 1 464 278 60 0 chr11 123638450 123638583 -27144970 + MIR SINE MIR 116 256 -6 192 97 0 0 chr11 123639615 123639646 -27143907 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1533 163 26 0 chr11 123639648 123639918 -27143635 - AluJb SINE Alu -35 277 1 778 156 55 0 chr11 123640606 123640734 -27142819 - AluJo SINE Alu -177 135 1 726 77 8 17 chr11 123640888 123641005 -27142548 + (TTCC)n Simple_repeat Simple_repeat 1 116 0 603 218 88 7 chr11 123641007 123641154 -27142399 - FRAM SINE Alu -7 169 11 238 381 21 0 chr11 123641279 123641376 -27142177 - L2 LINE L2 -451 2863 2765 191 61 30 0 chr11 123641388 123641421 -27142132 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 1971 248 16 53 chr11 123641507 123642125 -27141428 + L1P3 LINE L1 1 595 -5280 1882 146 3 3 chr11 123642436 123642731 -27140822 - AluJb SINE Alu -17 295 1 291 269 185 9 chr11 123642796 123642904 -27140649 + MER5A DNA MER1_type 55 181 -8 260 113 0 0 chr11 123643611 123643655 -27139898 - FLAM SINE Alu -8 125 89 665 201 0 56 chr11 123643761 123643905 -27139648 - FRAM SINE Alu -15 161 26 219 114 0 0 chr11 123644426 123644461 -27139092 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 185 348 42 51 chr11 123645012 123645130 -27138423 + L2 LINE L2 3143 3259 -13 493 287 50 57 chr11 123645366 123645516 -27138037 + L1ME4a LINE L1 5467 5616 -505 1698 85 0 0 chr11 123645516 123645739 -27137814 + AluY SINE Alu 83 305 -6 493 287 50 57 chr11 123645739 123645888 -27137665 + L1ME4a LINE L1 5616 5764 -357 195 371 11 22 chr11 123646029 123646118 -27137435 + MIR SINE MIR 65 152 -56 331 191 162 29 chr11 123646271 123646407 -27137146 + L1ME4a LINE L1 5963 6116 -5 366 270 50 0 chr11 123646533 123646633 -27136920 - MIR3 SINE MIR -36 172 68 1761 149 3 17 chr11 123647481 123647776 -27135777 - AluJo SINE Alu -13 299 9 412 311 218 11 chr11 123648073 123648353 -27135200 - L3 LINE CR1 -10 1567 1230 2022 131 0 7 chr11 123649024 123649329 -27134224 - AluJb SINE Alu -9 303 1 627 319 0 5 chr11 123650306 123650491 -27133062 - MER91B DNA MER1_type -5 185 2 380 301 77 0 chr11 123650662 123650805 -27132748 - MIR SINE MIR -6 256 103 333 279 13 0 chr11 123650911 123650990 -27132563 - MIR SINE MIR -162 100 21 197 212 167 76 chr11 123651156 123651222 -27132331 - L2 LINE L2 -25 3288 3217 417 283 9 9 chr11 123651315 123651421 -27132132 - MER5B DNA MER1_type -70 108 3 1262 186 126 44 chr11 123651729 123651938 -27131615 + MER2 DNA MER2_type 2 247 -97 2275 102 0 3 chr11 123651938 123652252 -27131301 - AluSp SINE Alu 0 313 1 1262 186 126 44 chr11 123652252 123652359 -27131194 + MER2 DNA MER2_type 247 344 0 2048 113 20 0 chr11 123653281 123653573 -27129980 - AluSc SINE Alu -11 298 1 511 283 103 90 chr11 123654434 123654745 -27128808 - L2 LINE L2 -14 3258 2944 22 0 0 0 chr11 123655477 123655499 -27128054 + AT_rich Low_complexity Low_complexity 1 22 0 2048 124 3 0 chr11 123655502 123655793 -27127760 + AluSq SINE Alu 1 292 -21 552 291 53 42 chr11 123655843 123656032 -27127521 + MIR SINE MIR 20 210 -52 923 269 120 41 chr11 123656078 123656521 -27127032 - L2 LINE L2 -2 3311 2834 2254 221 52 44 chr11 123656528 123656693 -27126860 + MER119 DNA MER1_type 6 168 -415 2114 113 0 29 chr11 123656693 123657003 -27126550 - AluSx SINE Alu -11 301 1 2254 221 52 44 chr11 123657003 123657408 -27126145 + MER119 DNA MER1_type 168 581 -2 321 208 52 31 chr11 123657553 123657649 -27125904 - MER5B DNA MER1_type -4 174 77 23 54 0 0 chr11 123658087 123658124 -27125429 + GC_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr11 123658845 123658869 -27124684 + AT_rich Low_complexity Low_complexity 1 24 0 515 262 58 35 chr11 123658915 123659087 -27124466 + MIR SINE MIR 14 189 -73 378 270 31 31 chr11 123659812 123659975 -27123578 - HAL1b LINE L1 -579 769 607 699 62 35 9 chr11 123660140 123660253 -27123300 + (TTCC)n Simple_repeat Simple_repeat 3 118 0 231 275 62 53 chr11 123660297 123660541 -27123012 - HAL1b LINE L1 -1007 341 96 3273 244 25 3 chr11 123660545 123661255 -27122298 - HsTC2c DNA MER2_type 0 729 4 22 35 0 0 chr11 123661373 123661402 -27122151 + AT_rich Low_complexity Low_complexity 1 29 0 443 316 42 21 chr11 123661504 123661694 -27121859 + MLT1J1 LTR MaLR 101 294 -152 503 131 93 37 chr11 123662997 123663104 -27120449 - L1M4 LINE L1 -1144 5002 4890 197 313 101 0 chr11 123663190 123663289 -27120264 - L2 LINE L2 -1478 1836 1728 230 377 93 9 chr11 123663294 123663509 -27120044 - MIR SINE MIR -10 252 20 355 317 43 70 chr11 123663527 123663608 -27119945 - L2 LINE L2 -956 2358 2276 2065 96 36 10 chr11 123663608 123663909 -27119644 + AluSx SINE Alu 1 309 -3 355 317 43 70 chr11 123663909 123664127 -27119426 - L2 LINE L2 -1038 2276 2067 288 326 54 0 chr11 123664153 123664245 -27119308 + L2 LINE L2 3172 3268 -4 535 304 83 31 chr11 123664271 123664597 -27118956 - L2 LINE L2 -1303 2011 1669 1495 95 0 38 chr11 123664900 123665111 -27118442 + AluSq SINE Alu 93 295 -18 2181 115 0 3 chr11 123665579 123665874 -27117679 - AluSg SINE Alu -15 295 2 1804 134 0 49 chr11 123665877 123666184 -27117369 - AluSx SINE Alu -20 292 1 24 0 0 0 chr11 123666425 123666449 -27117104 + AT_rich Low_complexity Low_complexity 1 24 0 933 226 102 43 chr11 123666644 123666967 -27116586 + MER2 DNA MER2_type 1 342 -2 1929 142 7 32 chr11 123666991 123667301 -27116252 - AluSx SINE Alu -10 302 1 28 0 0 0 chr11 123667349 123667377 -27116176 + AT_rich Low_complexity Low_complexity 1 28 0 591 231 150 6 chr11 123667454 123667627 -27115926 - MER58A DNA MER1_type -1 223 26 2109 112 20 0 chr11 123670261 123670555 -27112998 - AluY SINE Alu -11 300 1 2067 90 7 55 chr11 123671116 123671426 -27112127 + AluSx SINE Alu 1 295 -17 2202 99 14 0 chr11 123671775 123672068 -27111485 + AluSq SINE Alu 1 297 -16 2086 124 0 0 chr11 123672198 123672481 -27111072 + AluSx SINE Alu 1 283 -29 1655 88 14 5 chr11 123672799 123673015 -27110538 + AluSx SINE Alu 1 218 -94 345 236 0 14 chr11 123673167 123673239 -27110314 - MER69 DNA AcHobo -2455 71 1 2092 131 0 10 chr11 123673396 123673694 -27109859 + AluSx SINE Alu 1 295 -17 207 139 0 0 chr11 123673840 123673876 -27109677 + (TA)n Simple_repeat Simple_repeat 2 37 0 222 37 0 0 chr11 123673975 123674002 -27109551 + (A)n Simple_repeat Simple_repeat 1 27 0 2631 61 0 0 chr11 123674258 123674569 -27108984 - AluY SINE Alu 0 311 1 1873 146 3 48 chr11 123675481 123675797 -27107756 + AluJo SINE Alu 1 302 -10 2049 128 0 3 chr11 123676447 123676761 -27106792 + AluSp SINE Alu 2 314 0 225 0 0 0 chr11 123676928 123676953 -27106600 + (TAAAA)n Simple_repeat Simple_repeat 4 28 0 27 29 0 0 chr11 123677000 123677034 -27106519 + AT_rich Low_complexity Low_complexity 1 34 0 1986 204 74 62 chr11 123677196 123677761 -27105792 + L1M4 LINE L1 3756 4327 -1819 985 176 0 0 chr11 123677779 123677938 -27105615 + FAM SINE Alu 10 168 -17 2156 211 57 11 chr11 123677948 123678489 -27105064 + L1M4 LINE L1 4327 4892 -1254 2117 132 3 3 chr11 123678493 123678797 -27104756 + AluSx SINE Alu 1 304 -8 328 283 150 17 chr11 123679087 123679207 -27104346 + L2 LINE L2 3137 3272 0 1832 137 0 70 chr11 123679421 123679735 -27103818 - AluJo SINE Alu -16 296 5 517 198 30 0 chr11 123680076 123680177 -27103376 + MER97a DNA MER1_type? 58 161 -733 2210 112 0 0 chr11 123680752 123681048 -27102505 + AluY SINE Alu 1 296 -15 30 27 0 0 chr11 123681141 123681178 -27102375 + AT_rich Low_complexity Low_complexity 1 37 0 1528 147 4 20 chr11 123682316 123682477 -27101076 - AluJo SINE Alu -21 291 134 2274 88 3 7 chr11 123682477 123682799 -27100754 - AluSg SINE Alu 0 310 1 1528 147 4 20 chr11 123682799 123682882 -27100671 - AluJo SINE Alu -178 134 51 337 295 101 7 chr11 123682918 123683057 -27100496 - L2 LINE L2 -1 3312 3161 354 316 155 12 chr11 123683115 123683283 -27100270 - L2 LINE L2 -400 2914 2723 4149 148 75 21 chr11 123683313 123683553 -27100000 - L1MB7 LINE L1 0 6184 5958 2137 86 3 95 chr11 123683553 123683889 -27099664 + AluSp SINE Alu 3 307 -6 4149 148 75 21 chr11 123683889 123684447 -27099106 - L1MB7 LINE L1 -226 5958 5343 959 286 184 68 chr11 123684451 123684650 -27098903 - L2 LINE L2 -604 2710 2535 1436 67 0 0 chr11 123684650 123684828 -27098725 - L1PA8 LINE L1 0 6172 5995 2240 96 7 3 chr11 123684837 123685128 -27098425 - AluSg SINE Alu -18 292 1 959 286 184 68 chr11 123685128 123685756 -27097797 - L2 LINE L2 -786 2528 1776 2180 120 7 0 chr11 123685921 123686222 -27097331 + AluSx SINE Alu 1 303 -9 460 290 24 0 chr11 123686223 123686347 -27097206 + MIR3 SINE MIR 66 192 -16 2244 87 0 10 chr11 123686506 123686823 -27096730 + AluSx SINE Alu 1 314 0 989 247 184 93 chr11 123686835 123687763 -27095790 - L2 LINE L2 -2 3311 2273 21 0 0 0 chr11 123687771 123687792 -27095761 + AT_rich Low_complexity Low_complexity 1 21 0 2155 99 3 53 chr11 123688404 123688727 -27094826 + AluSx SINE Alu 3 309 -3 191 222 130 19 chr11 123689170 123689224 -27094329 + MIR SINE MIR 128 187 -75 188 332 179 20 chr11 123689244 123689440 -27094113 + L2 LINE L2 2397 2623 -691 313 331 50 16 chr11 123689440 123689561 -27093992 + L2 LINE L2 3139 3263 -9 228 346 126 6 chr11 123690556 123690730 -27092823 + MIR SINE MIR 30 223 -39 180 325 72 0 chr11 123690774 123690857 -27092696 + MIR SINE MIR 21 109 -153 22 0 0 0 chr11 123692462 123692484 -27091069 + AT_rich Low_complexity Low_complexity 1 22 0 271 320 10 40 chr11 123692692 123692792 -27090761 - MIR SINE MIR -69 139 43 195 269 0 50 chr11 123694584 123694675 -27088878 + MIR SINE MIR 102 186 -61 2294 97 7 3 chr11 123695269 123695568 -27087985 - AluSx SINE Alu -12 300 1 2387 84 3 0 chr11 123695577 123695873 -27087680 - AluSc SINE Alu -12 297 1 2666 238 37 1 chr11 123695907 123696555 -27086998 - L1MB7 LINE L1 -31 6153 5483 5596 132 60 21 chr11 123696588 123697493 -27086060 + Tigger1 DNA MER2_type 7 946 -1472 1701 135 36 18 chr11 123697495 123697776 -27085777 + Tigger1 DNA MER2_type 2118 2403 -15 183 245 0 61 chr11 123697892 123697941 -27085612 - L2 LINE L2 -65 3207 3162 186 143 0 0 chr11 123698313 123698348 -27085205 + (G)n Simple_repeat Simple_repeat 1 35 0 1076 213 94 12 chr11 123698364 123698693 -27084860 + Charlie4a DNA MER1_type 96 451 -57 2072 122 0 0 chr11 123699121 123699399 -27084154 - AluSx SINE Alu -32 280 3 23 33 0 0 chr11 123699578 123699608 -27083945 + AT_rich Low_complexity Low_complexity 1 30 0 2473 63 10 0 chr11 123699867 123700167 -27083386 - AluY SINE Alu -7 304 2 1954 132 0 40 chr11 123700171 123700474 -27083079 - AluSx SINE Alu -21 291 1 24 0 0 0 chr11 123700715 123700739 -27082814 + AT_rich Low_complexity Low_complexity 1 24 0 933 226 102 43 chr11 123700934 123701257 -27082296 + MER2 DNA MER2_type 1 342 -2 1929 142 7 32 chr11 123701281 123701591 -27081962 - AluSx SINE Alu -10 302 1 28 0 0 0 chr11 123701639 123701667 -27081886 + AT_rich Low_complexity Low_complexity 1 28 0 591 231 150 6 chr11 123701744 123701917 -27081636 - MER58A DNA MER1_type -1 223 26 2118 112 20 0 chr11 123704552 123704847 -27078706 - AluY SINE Alu -10 301 1 2067 90 7 55 chr11 123705408 123705718 -27077835 + AluSx SINE Alu 1 295 -17 2193 99 14 0 chr11 123706068 123706360 -27077193 + AluSq SINE Alu 1 296 -17 2086 124 0 0 chr11 123706490 123706773 -27076780 + AluSx SINE Alu 1 283 -29 2506 71 10 3 chr11 123707091 123707402 -27076151 + AluSq SINE Alu 1 313 0 30 0 0 0 chr11 123707402 123707432 -27076121 + AT_rich Low_complexity Low_complexity 1 30 0 1484 91 43 0 chr11 123708115 123708324 -27075229 - AluSq SINE Alu -95 218 1 1711 172 27 3 chr11 123710705 123711002 -27072551 + AluJo SINE Alu 1 304 -8 198 310 138 0 chr11 123711600 123711687 -27071866 - L2 LINE L2 -6 3266 3168 292 269 119 15 chr11 123712597 123712731 -27070822 - MIR SINE MIR -10 252 105 467 135 18 99 chr11 123715181 123715292 -27068261 - MER69A DNA AcHobo 0 177 76 1691 158 33 4 chr11 123715296 123715568 -27067985 + AluSx SINE Alu 7 286 -26 421 202 24 0 chr11 123715589 123715673 -27067880 - MER69A DNA AcHobo -89 88 3 212 221 240 0 chr11 123716389 123716493 -27067060 + L2 LINE L2 1944 2072 -1242 541 218 8 16 chr11 123716500 123716624 -27066929 - L2 LINE L2 0 3313 3191 414 335 132 43 chr11 123716776 123717358 -27066195 + L2 LINE L2 2243 2876 -438 2425 87 3 0 chr11 123717390 123717689 -27065864 - AluSx SINE Alu -12 300 1 315 151 198 12 chr11 123717756 123717842 -27065711 + L2 LINE L2 3209 3310 -3 2277 92 0 7 chr11 123717994 123718287 -27065266 + AluSc SINE Alu 1 291 -18 2239 108 3 0 chr11 123718686 123718982 -27064571 - AluSg SINE Alu -13 297 1 1891 166 7 0 chr11 123719015 123719323 -27064230 - AluJb SINE Alu -2 310 1 199 333 31 16 chr11 123719666 123719795 -27063758 + L3b LINE CR1 1327 1457 -126 2466 60 3 7 chr11 123720368 123720667 -27062886 + AluSg SINE Alu 1 298 -12 2325 74 0 10 chr11 123720818 123721116 -27062437 - AluY SINE Alu -16 295 1 2366 90 0 7 chr11 123721116 123721417 -27062136 - AluSx SINE Alu -13 299 1 728 242 47 71 chr11 123721464 123721724 -27061829 - L1MC4a LINE L1 -1868 5940 5688 2354 101 0 3 chr11 123721724 123722031 -27061522 - AluSg SINE Alu -4 306 1 728 242 47 71 chr11 123722031 123722092 -27061461 - L1MC4a LINE L1 -2120 5688 5627 241 97 0 0 chr11 123722227 123722258 -27061295 + MER103 DNA DNA 2 32 -134 250 311 12 89 chr11 123722999 123723166 -27060387 - MIR3 SINE MIR -70 138 1 240 313 0 15 chr11 123724219 123724286 -27059267 + MIR SINE MIR 16 81 -127 329 300 62 71 chr11 123724885 123725125 -27058428 + MIR SINE MIR 15 252 -10 1958 128 45 3 chr11 123725131 123725419 -27058134 + AluSx SINE Alu 1 300 -12 318 206 0 0 chr11 123725419 123725492 -27058061 + (CATA)n Simple_repeat Simple_repeat 1 73 0 283 233 11 11 chr11 123725492 123725582 -27057971 - L1MC4 LINE L1 -1339 6703 6614 * 310 267 0 0 chr11 123725504 123725594 -27057959 + L1MC4 LINE L1 6614 6703 -1339 431 194 10 0 chr11 123725595 123725693 -27057860 + (TA)n Simple_repeat Simple_repeat 1 99 0 310 289 63 14 chr11 123725839 123725981 -27057572 - L2 LINE L2 -51 3262 3114 2341 98 3 0 chr11 123727592 123727888 -27055665 + AluSx SINE Alu 1 297 -15 1503 95 0 38 chr11 123728356 123728567 -27054986 - AluSq SINE Alu -18 295 93 478 315 51 17 chr11 123728870 123729162 -27054391 + L2 LINE L2 1669 1970 -1344 252 296 62 0 chr11 123729222 123729303 -27054250 - L2 LINE L2 -4 3268 3183 279 317 43 70 chr11 123729340 123729558 -27053995 + L2 LINE L2 2067 2276 -1038 2154 97 37 3 chr11 123729558 123729857 -27053696 - AluSx SINE Alu -3 309 1 279 317 43 70 chr11 123729857 123729938 -27053615 + L2 LINE L2 2276 2358 -956 215 380 88 9 chr11 123729956 123730172 -27053381 + MIR SINE MIR 20 252 -10 5040 143 45 35 chr11 123730363 123730606 -27052947 + L1MB5 LINE L1 4890 5129 -1045 1948 126 58 0 chr11 123730606 123730883 -27052670 + AluSx SINE Alu 1 293 -19 2154 112 3 0 chr11 123730890 123731186 -27052367 + AluSx SINE Alu 14 310 -2 5040 143 45 35 chr11 123731186 123731440 -27052113 + L1MB5 LINE L1 5134 5384 -790 2226 123 0 0 chr11 123731440 123731732 -27051821 + AluSc SINE Alu 1 292 -17 5040 143 45 35 chr11 123731732 123732499 -27051054 + L1MB5 LINE L1 5384 6174 0 1388 211 79 24 chr11 123732521 123732778 -27050775 + L1MCc LINE L1 16 302 -6121 2409 96 0 0 chr11 123732778 123733080 -27050473 - AluSq SINE Alu -11 302 1 1388 211 79 24 chr11 123733080 123733202 -27050351 + L1MCc LINE L1 302 416 -6007 4528 122 20 63 chr11 123733213 123733532 -27050021 + L1MA4 LINE L1 5434 5765 -535 1691 174 50 7 chr11 123733532 123733831 -27049722 + AluJo SINE Alu 1 312 0 4528 122 20 63 chr11 123733831 123734244 -27049309 + L1MA4 LINE L1 5765 6194 -106 1480 104 233 0 chr11 123734244 123734493 -27049060 + AluSx SINE Alu 1 307 -5 4528 122 20 63 chr11 123734493 123734540 -27049013 + L1MA4 LINE L1 6194 6177 -123 2314 105 3 0 chr11 123734540 123734845 -27048708 + AluSp SINE Alu 1 306 -7 4528 122 20 63 chr11 123734845 123734918 -27048635 + L1MA4 LINE L1 6176 6251 -49 713 202 8 8 chr11 123734920 123735049 -27048504 + FLAM_A SINE Alu 1 129 -4 309 256 98 0 chr11 123735051 123735133 -27048420 + L1MC4 LINE L1 6614 6703 -1339 231 213 27 13 chr11 123735140 123735215 -27048338 + L1MA4 LINE L1 6221 6296 -4 1921 261 133 25 chr11 123735239 123736170 -27047383 + L1MCc LINE L1 413 1512 -4911 1147 217 40 79 chr11 123736168 123736437 -27047116 + L1MCc LINE L1 3005 3254 -3687 * 1839 127 0 48 chr11 123736437 123736729 -27046824 + AluJb SINE Alu 3 280 -32 1147 217 40 79 chr11 123736729 123736879 -27046674 + L1MCc LINE L1 3254 3408 -3533 538 132 0 0 chr11 123736880 123736956 -27046597 + AluS SINE Alu 2 77 -236 38251 79 5 8 chr11 123736956 123742990 -27040563 + L1PA6 LINE L1 143 6154 0 1892 230 56 26 chr11 123743010 123743619 -27039934 + L1M4 LINE L1 4407 5033 -1113 1399 209 55 12 chr11 123744001 123744331 -27039222 - MLT1A2 LTR MaLR 0 374 31 253 238 122 75 chr11 123744400 123744547 -27039006 + L2 LINE L2 3158 3311 -2 325 368 122 31 chr11 123744568 123744794 -27038759 + L2 LINE L2 2394 2598 -674 2340 133 67 2 chr11 123744794 123745200 -27038353 - MSTB1 LTR MaLR 0 432 1 325 368 122 31 chr11 123745200 123745783 -27037770 + L2 LINE L2 2598 3272 0 259 224 0 0 chr11 123745822 123745871 -27037682 - L2 LINE L2 -18 3295 3247 2330 90 3 3 chr11 123745910 123746209 -27037344 - AluSx SINE Alu -13 299 1 1996 133 0 17 chr11 123746546 123746846 -27036707 + AluSq SINE Alu 3 297 -16 2143 129 0 0 chr11 123747021 123747315 -27036238 + AluSx SINE Alu 1 294 -18 297 0 0 0 chr11 123747602 123747635 -27035918 + (TC)n Simple_repeat Simple_repeat 2 34 0 2145 121 0 0 chr11 123747652 123747934 -27035619 - AluSg SINE Alu -24 286 5 2258 114 10 0 chr11 123748322 123748619 -27034934 + AluSq SINE Alu 1 300 -13 2293 98 3 3 chr11 123749234 123749530 -27034023 + AluSc SINE Alu 1 296 -13 21 0 0 0 chr11 123749754 123749775 -27033778 + AT_rich Low_complexity Low_complexity 1 21 0 2002 94 23 20 chr11 123749967 123750266 -27033287 + AluSq SINE Alu 1 300 -13 2290 112 3 0 chr11 123750331 123750636 -27032917 - AluSg SINE Alu -4 306 1 35 0 0 0 chr11 123750932 123750967 -27032586 + AT_rich Low_complexity Low_complexity 1 35 0 2200 115 0 0 chr11 123750967 123751255 -27032298 - AluSx SINE Alu -24 288 1 2197 104 0 10 chr11 123751268 123751556 -27031997 - AluSx SINE Alu -27 285 1 888 267 112 45 chr11 123751907 123752311 -27031242 - L1MEd LINE L1 -5294 825 377 2063 84 0 61 chr11 123752311 123752608 -27030945 - AluSp SINE Alu -20 293 15 888 267 112 45 chr11 123752608 123752720 -27030833 - L1MEd LINE L1 -5742 377 274 1739 168 3 10 chr11 123752753 123753044 -27030509 + AluJo SINE Alu 1 289 -23 2312 83 0 14 chr11 123753053 123753343 -27030210 + AluY SINE Alu 1 286 -25 23 0 0 0 chr11 123753343 123753366 -27030187 + AT_rich Low_complexity Low_complexity 1 23 0 2248 86 21 7 chr11 123753517 123753807 -27029746 + AluSq SINE Alu 1 294 -19 267 358 133 30 chr11 123753989 123754338 -27029215 + L2 LINE L2 2384 2780 -534 2028 148 0 0 chr11 123754338 123754643 -27028910 + AluJb SINE Alu 1 305 -7 267 358 133 30 chr11 123754643 123754692 -27028861 + L2 LINE L2 2780 2823 -491 287 283 150 17 chr11 123754933 123755053 -27028500 + L2 LINE L2 3137 3272 0 1843 137 0 70 chr11 123755267 123755581 -27027972 - AluJo SINE Alu -16 296 5 508 198 30 0 chr11 123755922 123756023 -27027530 + MER97a DNA MER1_type? 58 161 -733 2257 108 0 0 chr11 123756598 123756895 -27026658 + AluY SINE Alu 1 297 -14 30 27 0 0 chr11 123756987 123757024 -27026529 + AT_rich Low_complexity Low_complexity 1 37 0 1522 151 4 20 chr11 123758162 123758323 -27025230 - AluJo SINE Alu -21 291 134 2191 92 7 10 chr11 123758323 123758645 -27024908 - AluSg SINE Alu 0 310 1 1522 151 4 20 chr11 123758645 123758728 -27024825 - AluJo SINE Alu -178 134 51 298 295 101 7 chr11 123758764 123758903 -27024650 - L2 LINE L2 -1 3312 3161 301 316 155 12 chr11 123758961 123759129 -27024424 - L2 LINE L2 -400 2914 2723 4110 148 75 21 chr11 123759159 123759399 -27024154 - L1MB7 LINE L1 0 6184 5958 2139 87 3 96 chr11 123759399 123759734 -27023819 + AluSp SINE Alu 3 306 -7 4110 148 75 21 chr11 123759734 123760292 -27023261 - L1MB7 LINE L1 -226 5958 5343 867 284 183 73 chr11 123760296 123760495 -27023058 - L2 LINE L2 -604 2710 2534 1375 67 0 0 chr11 123760495 123760673 -27022880 - L1PA8 LINE L1 0 6172 5995 867 284 183 73 chr11 123760673 123760687 -27022866 - L2 LINE L2 -780 2534 2523 2051 119 7 3 chr11 123760687 123760973 -27022580 - AluSg SINE Alu -23 287 1 867 284 183 73 chr11 123760973 123761601 -27021952 - L2 LINE L2 -791 2523 1776 2180 120 7 0 chr11 123761766 123762067 -27021486 + AluSx SINE Alu 1 303 -9 460 290 24 0 chr11 123762068 123762192 -27021361 + MIR3 SINE MIR 66 192 -16 2244 87 0 10 chr11 123762351 123762668 -27020885 + AluSx SINE Alu 1 314 0 1016 247 184 91 chr11 123762680 123763607 -27019946 - L2 LINE L2 -2 3311 2273 21 0 0 0 chr11 123763615 123763636 -27019917 + AT_rich Low_complexity Low_complexity 1 21 0 2155 99 3 53 chr11 123764248 123764571 -27018982 + AluSx SINE Alu 3 309 -3 191 222 130 19 chr11 123765014 123765068 -27018485 + MIR SINE MIR 128 187 -75 188 332 179 20 chr11 123765088 123765284 -27018269 + L2 LINE L2 2397 2623 -691 313 331 50 16 chr11 123765284 123765405 -27018148 + L2 LINE L2 3139 3263 -9 204 353 126 6 chr11 123766400 123766574 -27016979 + MIR SINE MIR 30 223 -39 180 325 72 0 chr11 123766618 123766701 -27016852 + MIR SINE MIR 21 109 -153 22 0 0 0 chr11 123768306 123768328 -27015225 + AT_rich Low_complexity Low_complexity 1 22 0 271 320 10 40 chr11 123768536 123768636 -27014917 - MIR SINE MIR -69 139 43 195 269 0 50 chr11 123770429 123770520 -27013033 + MIR SINE MIR 102 186 -61 2339 91 7 3 chr11 123771114 123771410 -27012143 - AluSg SINE Alu -13 297 1 2442 74 0 3 chr11 123771419 123771717 -27011836 - AluSc SINE Alu -12 297 1 287 141 138 52 chr11 123771721 123771779 -27011774 - L1MB7 LINE L1 0 6178 6117 1652 118 17 112 chr11 123771782 123772139 -27011414 - L1MB7 LINE L1 -192 5992 5670 289 146 0 0 chr11 123772554 123772595 -27010958 + Alu SINE Alu 1 41 -261 2176 130 0 9 chr11 123772647 123772962 -27010591 + AluSx SINE Alu 1 312 0 2364 98 0 3 chr11 123773315 123773620 -27009933 + AluSq SINE Alu 1 304 -9 325 344 0 0 chr11 123773623 123773713 -27009840 - L2 LINE L2 -25 3288 3199 837 189 55 0 chr11 123773913 123774077 -27009476 + AluJo SINE Alu 1 173 -139 2410 95 0 0 chr11 123774618 123774923 -27008630 + AluSg SINE Alu 1 305 -5 238 258 106 45 chr11 123775170 123775302 -27008251 - MIR SINE MIR -56 206 67 198 0 0 0 chr11 123775355 123775377 -27008176 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 466 319 99 28 chr11 123775672 123775954 -27007599 + L2 LINE L2 2141 2442 -872 1505 162 5 13 chr11 123775962 123776321 -27007232 + Tigger2a DNA MER2_type 1 444 0 543 339 122 0 chr11 123776347 123776716 -27006837 + L2 LINE L2 2493 2906 -408 263 236 45 67 chr11 123777434 123777523 -27006030 - MIR SINE MIR -49 213 127 581 254 166 0 chr11 123779018 123779187 -27004366 - MIR SINE MIR -64 198 2 2172 110 3 0 chr11 123779853 123780178 -27003375 - AluSx SINE Alu 0 327 2 1777 152 16 29 chr11 123780182 123780498 -27003055 - AluJo SINE Alu 0 312 1 2311 109 0 0 chr11 123780648 123780951 -27002602 - AluSq SINE Alu -10 303 1 472 278 54 37 chr11 123782441 123782656 -27000897 - MLT1I LTR MaLR -150 259 46 2178 100 3 34 chr11 123783461 123783782 -26999771 + AluSx SINE Alu 1 311 -1 2202 112 7 3 chr11 123783961 123784264 -26999289 - AluSx SINE Alu -8 304 1 234 0 0 0 chr11 123785051 123785077 -26998476 + (TA)n Simple_repeat Simple_repeat 2 27 0 2205 109 10 3 chr11 123785081 123785392 -26998161 - AluSq SINE Alu 0 313 1 240 319 6 24 chr11 123785708 123785874 -26997679 - AluSg/x SINE Alu -19 283 121 2072 122 0 0 chr11 123786535 123786813 -26996740 - AluSx SINE Alu -32 280 3 23 33 0 0 chr11 123786992 123787022 -26996531 + AT_rich Low_complexity Low_complexity 1 30 0 1755 128 4 11 chr11 123787280 123787561 -26995992 - AluSc SINE Alu -7 302 24 2691 166 4 17 chr11 123787562 123788033 -26995520 - L1M3 LINE L1 -359 5824 5360 1351 184 88 46 chr11 123788041 123788324 -26995229 - AluJo SINE Alu -17 295 1 325 308 97 47 chr11 123788326 123788613 -26994940 + L1 LINE L1 4226 4534 -1612 2449 75 0 0 chr11 123788613 123788907 -26994646 + AluSx SINE Alu 1 294 -18 325 308 97 47 chr11 123788907 123788960 -26994593 + L1 LINE L1 4534 4583 -1563 6883 159 11 12 chr11 123788960 123790229 -26993324 + L1 LINE L1 4133 5400 -746 489 146 0 37 chr11 123790244 123790259 -26993294 + AluSq SINE Alu 121 135 -178 799 147 31 23 chr11 123790259 123790388 -26993165 + FLAM_C SINE Alu 1 130 -3 489 146 0 37 chr11 123790388 123790454 -26993099 + AluSq SINE Alu 135 199 -114 13059 84 9 24 chr11 123790457 123791610 -26991943 + Charlie3 DNA MER1_type 599 1718 -988 2385 92 3 0 chr11 123791610 123791916 -26991637 - AluSc SINE Alu -2 307 1 13059 84 9 24 chr11 123791916 123792548 -26991005 + Charlie3 DNA MER1_type 1718 2358 -348 2811 177 77 4 chr11 123792550 123793058 -26990495 - L1M2 LINE L1 -6304 545 1 610 296 102 14 chr11 123793086 123793417 -26990136 - L1M4 LINE L1 -3388 2758 2458 1562 177 17 33 chr11 123793417 123793716 -26989837 - AluJo SINE Alu -18 294 1 610 296 102 14 chr11 123793716 123793941 -26989612 - L1M4 LINE L1 -3688 2458 2153 2369 73 3 13 chr11 123794343 123794643 -26988910 + AluSp SINE Alu 3 299 -14 2022 139 0 0 chr11 123794816 123795110 -26988443 + AluSx SINE Alu 1 294 -18 297 0 0 0 chr11 123795397 123795430 -26988123 + (TC)n Simple_repeat Simple_repeat 2 34 0 2125 121 0 0 chr11 123795447 123795729 -26987824 - AluSg SINE Alu -24 286 5 2246 114 10 0 chr11 123796117 123796414 -26987139 + AluSq SINE Alu 1 300 -13 2359 101 3 0 chr11 123797029 123797337 -26986216 + AluSc SINE Alu 1 309 0 21 0 0 0 chr11 123797561 123797582 -26985971 + AT_rich Low_complexity Low_complexity 1 21 0 2246 89 24 0 chr11 123797774 123798067 -26985486 + AluSx SINE Alu 1 300 -12 353 282 60 27 chr11 123799820 123799969 -26983584 + L2 LINE L2 3114 3267 -46 431 194 10 0 chr11 123800108 123800206 -26983347 + (TA)n Simple_repeat Simple_repeat 2 100 0 323 267 0 0 chr11 123800207 123800297 -26983256 - L1MC4 LINE L1 -1339 6703 6614 299 233 11 11 chr11 123800219 123800309 -26983244 + L1MC4 LINE L1 6614 6703 -1339 * 318 206 0 0 chr11 123800309 123800382 -26983171 + (TATG)n Simple_repeat Simple_repeat 1 73 0 1968 127 45 3 chr11 123800382 123800673 -26982880 - AluSx SINE Alu -9 303 1 395 300 62 71 chr11 123800679 123800919 -26982634 - MIR SINE MIR -10 252 15 265 286 52 13 chr11 123801518 123801595 -26981958 - MIR3 SINE MIR -127 81 2 292 308 13 90 chr11 123802638 123802805 -26980748 + MIR3 SINE MIR 1 154 -70 241 97 0 0 chr11 123803546 123803577 -26979976 - MER103 DNA DNA -134 32 2 752 242 47 71 chr11 123803712 123803773 -26979780 + L1MC4a LINE L1 5627 5688 -2120 2332 101 0 3 chr11 123803773 123804080 -26979473 + AluSg SINE Alu 1 306 -4 752 242 47 71 chr11 123804080 123804340 -26979213 + L1MC4a LINE L1 5688 5940 -1868 2346 90 0 7 chr11 123804387 123804688 -26978865 + AluSx SINE Alu 1 299 -13 2156 127 0 9 chr11 123804688 123805003 -26978550 + AluSx SINE Alu 1 312 0 2321 99 3 3 chr11 123805356 123805660 -26977893 + AluSq SINE Alu 1 304 -9 325 344 0 0 chr11 123805663 123805753 -26977800 - L2 LINE L2 -25 3288 3199 837 189 55 0 chr11 123805953 123806117 -26977436 + AluJo SINE Alu 1 173 -139 2410 95 0 0 chr11 123806658 123806963 -26976590 + AluSg SINE Alu 1 305 -5 238 258 106 45 chr11 123807208 123807340 -26976213 - MIR SINE MIR -56 206 67 198 0 0 0 chr11 123807393 123807415 -26976138 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 466 319 99 28 chr11 123807710 123807992 -26975561 + L2 LINE L2 2141 2442 -872 1505 162 5 13 chr11 123808000 123808359 -26975194 + Tigger2a DNA MER2_type 1 444 0 543 339 122 0 chr11 123808385 123808754 -26974799 + L2 LINE L2 2493 2906 -408 263 236 45 67 chr11 123809472 123809561 -26973992 - MIR SINE MIR -49 213 127 581 254 166 0 chr11 123811056 123811225 -26972328 - MIR SINE MIR -64 198 2 2079 149 3 0 chr11 123811907 123812216 -26971337 - AluSx SINE Alu 0 312 3 2176 94 3 3 chr11 123812553 123812852 -26970701 + AluSx SINE Alu 1 299 -13 279 224 0 0 chr11 123812891 123812940 -26970613 + L2 LINE L2 3247 3295 -18 461 366 124 30 chr11 123812979 123813562 -26969991 - L2 LINE L2 0 3272 2596 2353 133 67 2 chr11 123813562 123813968 -26969585 + MSTB1 LTR MaLR 1 432 0 461 366 124 30 chr11 123813968 123814187 -26969366 - L2 LINE L2 -676 2596 2399 2151 114 3 0 chr11 123814354 123814660 -26968893 - AluSg SINE Alu -3 307 1 35 0 0 0 chr11 123814956 123814991 -26968562 + AT_rich Low_complexity Low_complexity 1 35 0 2074 115 0 0 chr11 123814991 123815279 -26968274 - AluSx SINE Alu -24 288 1 2072 104 0 10 chr11 123815292 123815580 -26967973 - AluSx SINE Alu -27 285 1 715 269 134 25 chr11 123815931 123816296 -26967257 - L1MEd LINE L1 -5294 825 421 1936 100 0 21 chr11 123816335 123816625 -26966928 - AluY SINE Alu -20 291 8 2198 103 0 7 chr11 123816664 123816966 -26966587 - AluSx SINE Alu -12 300 1 427 229 0 10 chr11 123817379 123817475 -26966078 - AluSg/x SINE Alu -12 300 206 210 71 0 0 chr11 123867668 123867696 -26915857 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2299 84 0 0 chr11 123868647 123868946 -26914607 - AluSx SINE Alu -13 299 1 464 278 60 0 chr11 123869024 123869157 -26914396 + MIR SINE MIR 116 256 -6 192 97 0 0 chr11 123870188 123870219 -26913334 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1494 167 18 14 chr11 123870221 123870497 -26913056 - AluJb SINE Alu -35 277 1 778 156 55 0 chr11 123871185 123871313 -26912240 - AluJo SINE Alu -177 135 1 970 141 0 11 chr11 123871474 123871651 -26911902 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 634 187 0 9 chr11 123871651 123871758 -26911795 - FRAM SINE Alu -60 116 11 238 381 21 0 chr11 123871883 123871980 -26911573 - L2 LINE L2 -451 2863 2765 191 61 30 0 chr11 123871992 123872025 -26911528 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 2028 231 21 58 chr11 123872111 123872729 -26910824 + L1P3 LINE L1 1 595 -5280 1867 149 3 3 chr11 123873040 123873335 -26910218 - AluJb SINE Alu -17 295 1 291 269 185 9 chr11 123873400 123873508 -26910045 + MER5A DNA MER1_type 55 181 -8 260 113 0 0 chr11 123874215 123874259 -26909294 - FLAM SINE Alu -8 125 89 645 164 0 62 chr11 123874365 123874493 -26909060 - FRAM SINE Alu -15 161 42 219 114 0 0 chr11 123875030 123875065 -26908488 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 185 348 42 51 chr11 123875616 123875734 -26907819 + L2 LINE L2 3143 3259 -13 493 287 50 57 chr11 123875970 123876120 -26907433 + L1ME4a LINE L1 5467 5616 -505 1698 85 0 0 chr11 123876120 123876343 -26907210 + AluY SINE Alu 83 305 -6 493 287 50 57 chr11 123876343 123876492 -26907061 + L1ME4a LINE L1 5616 5764 -357 195 371 11 22 chr11 123876633 123876722 -26906831 + MIR SINE MIR 65 152 -56 331 191 162 29 chr11 123876875 123877011 -26906542 + L1ME4a LINE L1 5963 6116 -5 366 270 50 0 chr11 123877137 123877237 -26906316 - MIR3 SINE MIR -36 172 68 1723 147 3 33 chr11 123878085 123878384 -26905169 - AluJo SINE Alu -14 298 9 412 311 218 11 chr11 123878681 123878961 -26904592 - L3 LINE CR1 -10 1567 1230 2022 131 0 7 chr11 123879632 123879937 -26903616 - AluJb SINE Alu -9 303 1 627 319 0 5 chr11 123880914 123881099 -26902454 - MER91B DNA MER1_type -5 185 2 380 301 77 0 chr11 123881270 123881413 -26902140 - MIR SINE MIR -6 256 103 333 279 13 0 chr11 123881519 123881598 -26901955 - MIR SINE MIR -162 100 21 197 212 167 76 chr11 123881764 123881830 -26901723 - L2 LINE L2 -25 3288 3217 417 283 9 9 chr11 123881923 123882029 -26901524 - MER5B DNA MER1_type -70 108 3 1262 186 126 44 chr11 123882337 123882546 -26901007 + MER2 DNA MER2_type 2 247 -97 2275 102 0 3 chr11 123882546 123882860 -26900693 - AluSp SINE Alu 0 313 1 1262 186 126 44 chr11 123882860 123882967 -26900586 + MER2 DNA MER2_type 247 344 0 226 285 92 39 chr11 123883042 123883172 -26900381 - MLT1J1 LTR MaLR -21 425 289 2048 113 20 0 chr11 123883889 123884181 -26899372 - AluSc SINE Alu -11 298 1 511 283 103 90 chr11 123885042 123885353 -26898200 - L2 LINE L2 -14 3258 2944 22 0 0 0 chr11 123886085 123886107 -26897446 + AT_rich Low_complexity Low_complexity 1 22 0 2048 124 3 0 chr11 123886110 123886401 -26897152 + AluSq SINE Alu 1 292 -21 552 291 53 42 chr11 123886451 123886640 -26896913 + MIR SINE MIR 20 210 -52 923 269 120 41 chr11 123886686 123887129 -26896424 - L2 LINE L2 -2 3311 2834 2254 221 52 44 chr11 123887136 123887301 -26896252 + MER119 DNA MER1_type 6 168 -415 2106 113 0 29 chr11 123887301 123887610 -26895943 - AluSx SINE Alu -12 300 1 2254 221 52 44 chr11 123887610 123888015 -26895538 + MER119 DNA MER1_type 168 581 -2 321 208 52 31 chr11 123888160 123888256 -26895297 - MER5B DNA MER1_type -4 174 77 23 54 0 0 chr11 123888794 123888831 -26894722 + GC_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr11 123889551 123889575 -26893978 + AT_rich Low_complexity Low_complexity 1 24 0 515 262 58 35 chr11 123889621 123889793 -26893760 + MIR SINE MIR 14 189 -73 361 270 31 31 chr11 123890518 123890681 -26892872 - HAL1b LINE L1 -579 769 607 600 69 39 10 chr11 123890846 123890948 -26892605 + (TTCC)n Simple_repeat Simple_repeat 2 106 0 505 282 58 69 chr11 123890948 123891239 -26892314 - HAL1b LINE L1 -965 383 96 3074 242 25 3 chr11 123891243 123891953 -26891600 - HsTC2c DNA MER2_type 0 729 4 22 35 0 0 chr11 123892071 123892100 -26891453 + AT_rich Low_complexity Low_complexity 1 29 0 533 304 75 42 chr11 123892202 123892537 -26891016 + MLT1J1 LTR MaLR 101 446 0 312 277 0 0 chr11 123893107 123893172 -26890381 + L1MC4 LINE L1 6648 6712 -1330 214 353 30 53 chr11 123895391 123895524 -26888029 + MIR SINE MIR 17 146 -62 239 282 71 77 chr11 123895684 123895799 -26887754 - MIR SINE MIR -93 115 20 502 200 221 0 chr11 123896453 123896598 -26886955 - MER5A DNA MER1_type -3 186 10 965 215 17 110 chr11 123896759 123897271 -26886282 - MLT2B2 LTR ERVL -96 458 1 665 272 69 20 chr11 123897511 123897713 -26885840 + MIR SINE MIR 32 243 -19 496 370 25 5 chr11 123897734 123897937 -26885616 - MIR SINE MIR -6 256 50 2102 101 17 0 chr11 123897972 123898260 -26885293 - AluSx SINE Alu -2 310 18 2972 208 34 29 chr11 123899651 123900332 -26883221 - L1MC4a LINE L1 0 7808 7121 1756 133 32 36 chr11 123900332 123900641 -26882912 - AluJb SINE Alu -4 308 1 2972 208 34 29 chr11 123900641 123900661 -26882892 - L1MC4a LINE L1 -687 7121 7103 2185 99 7 0 chr11 123901449 123901743 -26881810 + AluSx SINE Alu 1 296 -16 380 355 35 47 chr11 123902411 123902583 -26880970 - L2 LINE L2 -4 3268 3099 * 816 235 128 13 chr11 123902571 123902805 -26880748 - MIR SINE MIR 0 262 2 244 250 0 0 chr11 123902987 123903039 -26880514 - L2 LINE L2 -16 3256 3205 2087 112 3 7 chr11 123903245 123903548 -26880005 - AluSx SINE Alu -10 302 1 189 171 0 0 chr11 123904350 123904385 -26879168 + (TG)n Simple_repeat Simple_repeat 1 35 0 909 206 23 6 chr11 123905563 123905738 -26877815 + MER45A DNA AcHobo 1 178 0 948 231 27 27 chr11 123906079 123906304 -26877249 - MIR SINE MIR 0 262 38 781 271 54 12 chr11 123906300 123906540 -26877013 + MIR SINE MIR 7 256 -6 * 592 277 59 35 chr11 123906966 123907168 -26876385 - L2 LINE L2 0 3313 3107 386 190 248 0 chr11 123907390 123907511 -26876042 - MLT1I LTR MaLR 0 409 259 1102 262 51 19 chr11 123907581 123908060 -26875493 - MLT1F1 LTR MaLR -4 563 1 410 196 52 0 chr11 123908104 123908201 -26875352 - MLT1I LTR MaLR -303 106 5 223 304 88 20 chr11 123908634 123908736 -26874817 - L2 LINE L2 -597 2717 2609 191 61 30 0 chr11 123908744 123908777 -26874776 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 520 247 108 27 chr11 123909913 123910099 -26873454 - LTR16C LTR ERVL 0 491 291 684 213 188 25 chr11 123911103 123911343 -26872210 - L1ME1 LINE L1 -51 6115 5916 297 0 0 0 chr11 123911402 123911435 -26872118 + (CA)n Simple_repeat Simple_repeat 1 33 0 406 257 18 12 chr11 123912289 123912425 -26871128 - L1MC4a LINE L1 -280 5882 5746 211 209 0 30 chr11 123913156 123913212 -26870341 + (TA)n Simple_repeat Simple_repeat 2 57 -9 1531 162 3 56 chr11 123913212 123913514 -26870039 - AluJb SINE Alu -26 286 1 211 209 0 30 chr11 123913514 123913524 -26870029 + (TA)n Simple_repeat Simple_repeat 57 66 0 430 176 69 75 chr11 123913535 123913694 -26869859 - L1MC5 LINE L1 -35 7926 7769 456 274 78 0 chr11 123915050 123915203 -26868350 + MER103 DNA DNA 1 165 -1 313 259 49 0 chr11 123915497 123915578 -26867975 - MIR SINE MIR -113 149 65 521 201 60 47 chr11 123915632 123915781 -26867772 + L2 LINE L2 3163 3313 0 340 240 10 10 chr11 123916152 123916252 -26867301 - HAL1 LINE L1 -163 2344 2245 349 281 75 20 chr11 123916357 123916503 -26867050 - HAL1b LINE L1 -449 899 746 568 268 168 53 chr11 123916926 123916971 -26866582 - HAL1 LINE L1 -732 1775 1737 2993 191 5 12 chr11 123916971 123917532 -26866021 + MER89 LTR ERV1 1 557 -2 568 268 168 53 chr11 123917532 123918068 -26865485 - HAL1 LINE L1 -770 1737 1127 1458 150 0 0 chr11 123918093 123918319 -26865234 + AluSg/x SINE Alu 76 301 -11 329 228 0 25 chr11 123919150 123919229 -26864324 - MIR SINE MIR -113 95 19 181 268 45 62 chr11 123919358 123919470 -26864083 + L2 LINE L2 3161 3270 -2 204 358 33 17 chr11 123919470 123919590 -26863963 - L2 LINE L2 -209 3063 2942 695 267 39 50 chr11 123919823 123920081 -26863472 - MIR SINE MIR 0 262 8 187 140 80 60 chr11 123920275 123920325 -26863228 + MIR3 SINE MIR 158 208 0 498 104 75 47 chr11 123921495 123921601 -26861952 - MER92B LTR ERV1 0 636 528 1436 135 11 68 chr11 123921604 123921885 -26861668 - MER44D DNA MER2_type -1 704 440 7387 47 13 0 chr11 123921890 123922855 -26860698 - L1PA6 LINE L1 -13 6141 5175 13135 21 1 0 chr11 123922860 123925142 -26858411 - L1PA2 LINE L1 0 6155 3876 31978 94 10 14 chr11 123925142 123929738 -26853815 - L1PA6 LINE L1 -955 5191 611 513 172 0 32 chr11 123929741 123929834 -26853719 - MER44D DNA MER2_type -249 360 1 2280 168 59 64 chr11 123929835 123930287 -26853266 - MER92B LTR ERV1 -110 526 76 1912 128 0 10 chr11 123930287 123930575 -26852978 - AluSq SINE Alu -21 292 8 2280 168 59 64 chr11 123930575 123930651 -26852902 - MER92B LTR ERV1 -560 76 1 257 263 102 58 chr11 123930742 123930879 -26852674 - MIR SINE MIR -97 165 23 581 274 87 39 chr11 123931858 123932088 -26851465 + MIR SINE MIR 15 255 -7 201 39 0 0 chr11 123932088 123932114 -26851439 + (ATG)n Simple_repeat Simple_repeat 1 26 0 413 238 0 133 chr11 123932512 123932663 -26850890 + MIR SINE MIR 49 179 -83 360 64 0 0 chr11 123933797 123933844 -26849709 + (TG)n Simple_repeat Simple_repeat 1 47 0 200 289 165 0 chr11 123934459 123934556 -26848997 + MIR3 SINE MIR 9 121 -87 2072 126 10 3 chr11 123935287 123935597 -26847956 + AluSx SINE Alu 1 312 0 1355 176 46 20 chr11 123935608 123935910 -26847643 + AluJo SINE Alu 1 310 -2 259 338 0 0 chr11 123935989 123936057 -26847496 + polypyrimidine Low_complexity Low_complexity 2 69 0 1101 169 142 0 chr11 123936184 123936403 -26847150 + MLT1A1 LTR MaLR 116 365 0 574 259 104 24 chr11 123938701 123938913 -26844640 + MIR SINE MIR 34 262 0 1229 184 59 4 chr11 123939023 123939262 -26844291 + AluJo SINE Alu 1 252 -60 213 154 0 0 chr11 123939265 123939304 -26844249 + A-rich Low_complexity Low_complexity 1 39 0 945 280 146 35 chr11 123939364 123939996 -26843557 - L1MC4a LINE L1 -1641 6167 5466 2097 113 0 3 chr11 123940017 123940317 -26843236 - AluSx SINE Alu -13 299 1 1637 292 74 12 chr11 123940557 123941071 -26842482 + MER115 DNA AcHobo 148 693 0 183 80 0 0 chr11 123941114 123941139 -26842414 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1075 122 0 0 chr11 123941139 123941286 -26842267 - AluSg/x SINE Alu -32 278 132 1789 113 9 113 chr11 123941286 123941615 -26841938 - AluSx SINE Alu -5 297 3 253 261 0 15 chr11 123941736 123941801 -26841752 - MIR SINE MIR -113 149 86 251 225 155 92 chr11 123942865 123943007 -26840546 + MIR SINE MIR 3 153 -109 215 263 53 0 chr11 123943347 123943404 -26840149 + L2 LINE L2 3195 3254 -59 646 251 77 15 chr11 123944026 123944221 -26839332 - Charlie8 DNA MER1_type -2186 231 25 211 308 122 9 chr11 123945250 123945357 -26838196 + L2 LINE L2 3136 3254 -18 399 339 109 13 chr11 123945387 123945617 -26837936 - MIR SINE MIR -10 252 1 334 251 40 20 chr11 123945629 123945729 -26837824 - MIR SINE MIR -61 201 101 785 259 5 35 chr11 123945956 123946153 -26837400 + MIR SINE MIR 38 228 -34 1340 233 118 32 chr11 123946630 123947037 -26836516 + MLT2B2 LTR ERVL 1 442 -73 700 83 53 0 chr11 123947037 123947170 -26836383 + (TCTA)n Simple_repeat Simple_repeat 3 142 0 363 122 0 0 chr11 123947172 123947231 -26836322 + MLT2D LTR ERVL 364 414 0 873 267 82 60 chr11 123947555 123947956 -26835597 - LTR16B LTR ERVL -54 410 1 272 192 0 39 chr11 123948302 123948354 -26835199 + MIR SINE MIR 197 246 -16 443 230 39 17 chr11 123948991 123949129 -26834424 + MIR SINE MIR 17 154 -68 1873 141 36 99 chr11 123949401 123949813 -26833740 + MLT1B LTR MaLR 5 390 0 6817 54 22 4 chr11 123949873 123951145 -26832408 - L1PA7 LINE L1 0 6154 4855 921 47 0 0 chr11 123951145 123951252 -26832301 - U6 snRNA snRNA 0 107 1 1774 133 7 14 chr11 123952281 123952574 -26830979 - AluSx SINE Alu -21 291 1 859 219 13 76 chr11 123952635 123952873 -26830680 + MLT1J2 LTR MaLR 1 223 -227 457 226 92 87 chr11 123952982 123953177 -26830376 + MLT1J1 LTR MaLR 250 445 -1 937 281 56 7 chr11 123953461 123953764 -26829789 + LTR33 LTR ERVL 1 318 -203 311 326 52 7 chr11 123953790 123953925 -26829628 + LTR33 LTR ERVL 373 513 -8 209 302 0 52 chr11 123954045 123954141 -26829412 - MIR SINE MIR -111 151 61 1882 152 0 9 chr11 123954860 123955175 -26828378 - AluJb SINE Alu 0 312 1 1433 152 11 2 chr11 123955217 123955505 -26828048 - MER2 DNA MER2_type -2 343 2 21 36 0 0 chr11 123955625 123955653 -26827900 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr11 123955699 123955727 -26827826 + AT_rich Low_complexity Low_complexity 1 28 0 198 339 15 0 chr11 123955735 123955800 -26827753 + L2 LINE L2 3207 3272 0 197 191 0 48 chr11 123956093 123956135 -26827418 - MIR SINE MIR -112 150 111 1907 142 3 7 chr11 123957016 123957326 -26826227 - AluSx SINE Alu -3 309 1 230 264 283 9 chr11 123957340 123957446 -26826107 + L2 LINE L2 3179 3313 0 282 132 0 0 chr11 123957849 123957902 -26825651 + (TG)n Simple_repeat Simple_repeat 1 53 0 205 229 69 48 chr11 123957931 123958060 -26825493 + MIR SINE MIR 20 184 -78 2254 112 0 0 chr11 123958261 123958573 -26824980 - AluSx SINE Alu 0 312 1 269 248 152 9 chr11 123958893 123958998 -26824555 + MIR SINE MIR 57 176 -86 233 274 40 57 chr11 123959094 123959218 -26824335 + MER5A DNA MER1_type 66 187 -2 401 286 88 47 chr11 123959858 123960200 -26823353 - LTR33A LTR ERVL 0 523 168 1227 250 107 14 chr11 123960370 123960384 -26823169 - L2 LINE L2 -8 3305 3294 1985 132 0 0 chr11 123960384 123960672 -26822881 - AluSc SINE Alu -21 288 1 1227 250 107 14 chr11 123960672 123961097 -26822456 - L2 LINE L2 -19 3294 2825 255 238 131 36 chr11 123961266 123961350 -26822203 - L2 LINE L2 -474 2840 2749 287 380 66 0 chr11 123961470 123961591 -26821962 + L2 LINE L2 3183 3311 -2 313 302 132 8 chr11 123962455 123962584 -26820969 - MIR SINE MIR -57 205 61 437 303 112 56 chr11 123962680 123963037 -26820516 - L2 LINE L2 0 3272 2896 780 296 32 5 chr11 123963434 123963654 -26819899 + L3 LINE CR1 738 963 -614 2304 154 203 49 chr11 123963660 123964192 -26819361 + LTR18B LTR ERVL 1 614 0 180 176 0 0 chr11 123965229 123965263 -26818290 + CT-rich Low_complexity Low_complexity 1 34 0 1333 221 45 34 chr11 123965264 123965617 -26817936 + MLT1A1 LTR MaLR 1 357 -8 251 314 49 0 chr11 123965644 123965746 -26817807 - L2 LINE L2 -16 3256 3150 195 186 0 0 chr11 123966640 123966683 -26816870 + CT-rich Low_complexity Low_complexity 1 43 0 1330 156 17 22 chr11 123967326 123967557 -26815996 + Tigger2 DNA MER2_type 3 232 -2486 2145 119 49 49 chr11 123967558 123967927 -26815626 + Tigger2 DNA MER2_type 2350 2718 0 725 251 59 14 chr11 123967992 123968211 -26815342 - MIR SINE MIR -15 247 19 1452 190 44 78 chr11 123968217 123968601 -26814952 - MLT1A2 LTR MaLR 0 374 4 250 333 121 17 chr11 123969245 123969485 -26814068 - L2 LINE L2 -571 2743 2479 364 241 95 29 chr11 123969632 123969769 -26813784 - MLT1L LTR MaLR -40 575 430 185 81 0 27 chr11 123970239 123970276 -26813277 + (TTTTTA)n Simple_repeat Simple_repeat 6 41 0 14472 42 1 0 chr11 123970286 123972763 -26810790 - L1PA4 LINE L1 -11 6144 3650 1329 204 18 18 chr11 123972939 123973213 -26810340 + Charlie4 DNA MER1_type 17 290 -1671 22 0 0 0 chr11 123974110 123974132 -26809421 + AT_rich Low_complexity Low_complexity 1 22 0 840 185 97 46 chr11 123974396 123974612 -26808941 + AluJo SINE Alu 86 312 0 2895 254 63 77 chr11 123974742 123976386 -26807167 + Charlie4 DNA MER1_type 336 1956 -5 2134 125 3 0 chr11 123976390 123976686 -26806867 + AluSx SINE Alu 1 297 -15 205 272 136 19 chr11 123977017 123977120 -26806433 - L2 LINE L2 -21 3251 3137 305 257 0 59 chr11 123977179 123977280 -26806273 + L2 LINE L2 3219 3313 0 1175 129 9 76 chr11 123977326 123977462 -26806091 + MER2 DNA MER2_type 1 119 -226 2095 100 7 0 chr11 123977462 123977765 -26805788 - AluSx SINE Alu 0 305 1 1175 129 9 76 chr11 123977765 123977852 -26805701 + MER2 DNA MER2_type 119 210 -135 798 202 119 62 chr11 123977926 123978058 -26805495 - L1ME4a LINE L1 -23 6098 5975 309 26 0 0 chr11 123978058 123978096 -26805457 + (CA)n Simple_repeat Simple_repeat 2 39 0 798 202 119 62 chr11 123978096 123978299 -26805254 - L1ME4a LINE L1 -146 5975 5744 462 300 37 53 chr11 123978319 123978562 -26804991 - MIR SINE MIR -9 253 15 586 200 9 0 chr11 123979097 123979207 -26804346 + MER81 DNA DNA 4 114 0 588 196 43 22 chr11 123979403 123979541 -26804012 + L2 LINE L2 2565 2705 -609 2246 243 57 20 chr11 123979548 123980210 -26803343 - L1ME1 LINE L1 0 6166 5480 36 0 0 0 chr11 123980211 123980247 -26803306 + AT_rich Low_complexity Low_complexity 1 36 0 686 157 149 8 chr11 123980247 123980381 -26803172 - AluJb SINE Alu -159 153 1 459 273 29 54 chr11 123980381 123980586 -26802967 + MER63A DNA MER1_type 10 209 -1 708 143 7 58 chr11 123980586 123980694 -26802859 - L1ME1 LINE L1 -1352 4794 4695 2417 69 0 0 chr11 123980694 123980984 -26802569 - AluY SINE Alu -21 290 1 708 143 7 58 chr11 123980984 123981029 -26802524 - L1ME1 LINE L1 -1451 4695 4649 467 206 24 48 chr11 123981002 123981167 -26802386 - L1MCc LINE L1 -1120 5026 4866 * 4851 155 22 19 chr11 123981166 123982575 -26800978 + L1P3 LINE L1 474 1901 -4550 372 239 78 21 chr11 123982575 123982717 -26800836 - L1MCc LINE L1 -2107 4834 4685 1126 186 147 53 chr11 123982723 123982767 -26800786 + MLT1B LTR MaLR 1 40 -350 1150 176 36 159 chr11 123982767 123983181 -26800372 - MLT1A1 LTR MaLR 0 365 3 1126 186 147 53 chr11 123983181 123983491 -26800062 + MLT1B LTR MaLR 40 388 -2 4977 249 78 40 chr11 123983496 123985239 -26798314 - L1MCc LINE L1 -2263 4678 3003 2456 73 0 13 chr11 123985239 123985554 -26797999 - AluY SINE Alu 0 311 1 4977 249 78 40 chr11 123985554 123986409 -26797144 - L1MCc LINE L1 -3938 3003 2182 2166 79 86 0 chr11 123986409 123986687 -26796866 - AluSc SINE Alu -7 302 1 4977 249 78 40 chr11 123986687 123987189 -26796364 - L1MCc LINE L1 -4759 2182 1701 3750 95 69 9 chr11 123987189 123987726 -26795827 + MER61E LTR ERV1 1 569 0 4977 249 78 40 chr11 123987726 123987937 -26795616 - L1MCc LINE L1 -5240 1701 1070 318 323 63 31 chr11 123987964 123988091 -26795462 - L1MCc LINE L1 -5417 1006 876 2228 153 2 53 chr11 123988235 123988646 -26794907 + MLT1B LTR MaLR 1 390 0 379 245 106 26 chr11 123988788 123988939 -26794614 - L1MCc LINE L1 -6250 173 11 412 216 36 9 chr11 123988940 123989051 -26794502 + L2 LINE L2 2694 2807 -507 635 221 33 50 chr11 123989054 123989235 -26794318 - MER5B DNA MER1_type 0 178 1 502 299 66 15 chr11 123989398 123989595 -26793958 + L2 LINE L2 2818 3024 -289 195 100 0 0 chr11 123989611 123989641 -26793912 + (TC)n Simple_repeat Simple_repeat 1 30 0 1472 199 29 19 chr11 123989668 123989979 -26793574 - MLT1C LTR MaLR 0 467 154 817 210 46 82 chr11 123989993 123990274 -26793279 - MLT1C LTR MaLR -196 271 1 374 256 6 77 chr11 123990286 123990454 -26793099 + L2 LINE L2 3158 3313 0 182 257 86 14 chr11 123992068 123992138 -26791415 + MIR SINE MIR 78 152 -110 281 272 117 10 chr11 123992169 123992272 -26791281 - L2 LINE L2 -9 3304 3191 857 193 102 15 chr11 123992274 123992471 -26791082 + MER58C DNA MER1_type 1 214 -1 1365 162 52 13 chr11 123992479 123992787 -26790766 + MER33 DNA MER1_type 5 324 0 288 312 57 7 chr11 123992799 123992940 -26790613 + MIR SINE MIR 64 211 -51 290 221 70 12 chr11 123992980 123993066 -26790487 + MIR SINE MIR 62 152 -110 262 324 102 9 chr11 123993093 123993201 -26790352 - L2 LINE L2 -5 3267 3150 638 236 73 0 chr11 123993203 123993368 -26790185 + MER58C DNA MER1_type 1 177 -38 477 265 61 11 chr11 123993708 123993889 -26789664 - MIR SINE MIR -52 210 21 239 266 144 7 chr11 123994008 123994147 -26789406 + MIR3 SINE MIR 48 205 -3 295 328 17 9 chr11 123994193 123994309 -26789244 - MER5A DNA MER1_type -22 167 51 391 273 79 29 chr11 123994404 123994543 -26789010 + L2 LINE L2 2474 2619 -695 397 211 267 17 chr11 123994570 123994750 -26788803 + MIR SINE MIR 37 261 -1 446 292 178 29 chr11 123994759 123995040 -26788513 + L2 LINE L2 2626 2948 -366 668 239 30 6 chr11 123995055 123995222 -26788331 + L2 LINE L2 3143 3313 0 245 268 232 43 chr11 123996921 123997059 -26786494 + MIR SINE MIR 56 219 -43 236 324 94 49 chr11 123997125 123997369 -26786184 + MIR SINE MIR 2 256 -6 603 294 70 5 chr11 123998119 123998320 -26785233 - MIR SINE MIR -2 260 47 243 296 0 0 chr11 124000485 124000654 -26782899 + (CA)n Simple_repeat Simple_repeat 2 170 0 320 211 5 38 chr11 124000675 124000860 -26782693 + (CA)n Simple_repeat Simple_repeat 2 180 0 312 268 0 0 chr11 124000924 124001088 -26782465 + (CA)n Simple_repeat Simple_repeat 1 164 0 565 234 48 0 chr11 124001661 124001785 -26781768 - MER94 DNA DNA -2 132 3 279 239 30 0 chr11 124002668 124002735 -26780818 - L2 LINE L2 -4 3268 3200 1573 236 47 28 chr11 124002858 124003285 -26780268 + LTR16A LTR ERVL 16 450 0 969 284 69 73 chr11 124003285 124004037 -26779516 - L2 LINE L2 -197 3075 2250 2373 195 53 25 chr11 124004037 124004560 -26778993 - MLT1F LTR MaLR -4 538 1 969 284 69 73 chr11 124004560 124004738 -26778815 - L2 LINE L2 -1022 2250 2073 326 242 47 31 chr11 124004743 124004871 -26778682 - MER94 DNA DNA -1 133 4 26 0 0 0 chr11 124007105 124007131 -26776422 + AT_rich Low_complexity Low_complexity 1 26 0 515 325 48 5 chr11 124007816 124008022 -26775531 - MIR SINE MIR -1 261 47 22 0 0 0 chr11 124008752 124008774 -26774779 + AT_rich Low_complexity Low_complexity 1 22 0 255 288 0 0 chr11 124008804 124008870 -26774683 - L2 LINE L2 -61 3252 3187 210 297 81 101 chr11 124009542 124009690 -26773863 - L3 LINE CR1 -7 1570 1426 409 338 61 61 chr11 124009690 124010151 -26773402 - L2 LINE L2 0 3272 2812 3211 136 28 16 chr11 124010193 124010699 -26772854 + MER41E LTR ERV1 1 512 0 204 237 51 0 chr11 124010712 124010771 -26772782 - L3 LINE CR1 -150 1427 1366 209 316 7 79 chr11 124011087 124011226 -26772327 + L2 LINE L2 3144 3272 0 1633 299 30 30 chr11 124011736 124012329 -26771224 + MLT1E LTR MaLR 1 593 0 408 269 14 28 chr11 124012329 124012474 -26771079 + MLT1E-int LTR MaLR 1 143 -1228 943 211 19 19 chr11 124012492 124012701 -26770852 + MLT1E-int LTR MaLR 393 601 -770 724 243 95 11 chr11 124012758 124012947 -26770606 + MLT1F LTR MaLR 335 539 -3 266 289 67 10 chr11 124013004 124013108 -26770445 + HAL1 LINE L1 463 572 -1935 3796 243 66 68 chr11 124013115 124014970 -26768583 + HAL1 LINE L1 652 2502 -5 22 0 0 0 chr11 124014981 124015003 -26768550 + AT_rich Low_complexity Low_complexity 1 22 0 316 364 27 18 chr11 124015410 124015635 -26767918 - MIR SINE MIR -13 249 23 683 263 10 43 chr11 124015745 124015954 -26767599 + MIR3 SINE MIR 7 208 0 187 340 0 0 chr11 124016193 124016246 -26767307 + MIR SINE MIR 21 73 -135 430 368 47 65 chr11 124016267 124016650 -26766903 - L2 LINE L2 -1 3271 2896 249 222 30 111 chr11 124017167 124017266 -26766287 + MIR SINE MIR 104 194 -68 1517 181 17 10 chr11 124018295 124018583 -26764970 + AluJo SINE Alu 6 295 -17 907 213 22 36 chr11 124020270 124020495 -26763058 - MIR SINE MIR 0 262 41 2058 218 153 14 chr11 124021397 124022091 -26761462 - LTR50 LTR ERVL -5 790 1 1970 129 4 7 chr11 124023499 124023779 -26759774 + AluSq SINE Alu 21 299 -14 26 0 0 0 chr11 124024306 124024332 -26759221 + AT_rich Low_complexity Low_complexity 1 26 0 6863 110 19 0 chr11 124024371 124025396 -26758157 + L1PA8 LINE L1 11 1054 -5407 8260 107 2 0 chr11 124025396 124027426 -26756127 + L1PA8 LINE L1 4443 6487 0 23794 146 14 17 chr11 124027439 124030412 -26753141 - L1PA10 LINE L1 -2 6481 3495 2348 107 0 0 chr11 124030412 124030711 -26752842 - AluSg SINE Alu -11 299 1 23794 146 14 17 chr11 124030711 124033176 -26750377 - L1PA10 LINE L1 -2988 3495 1023 1122 122 5 0 chr11 124033187 124033376 -26750177 - L1P5 LINE L1 -620 5536 5347 339 150 38 0 chr11 124033378 124033458 -26750095 + L1M1 LINE L1 5080 5162 -984 * 896 90 6 72 chr11 124033451 124033617 -26749936 + L1M1 LINE L1 5602 5756 -544 3632 121 22 29 chr11 124033633 124034260 -26749293 + L1PB4 LINE L1 5533 6155 -1 326 203 55 31 chr11 124034273 124034401 -26749152 + L1M4 LINE L1 5003 5133 -1013 406 195 42 17 chr11 124034402 124034492 -26749061 + L1M4 LINE L1 5089 5184 -962 655 121 0 113 chr11 124034492 124034633 -26748920 + L1PB1 LINE L1 6024 6148 -3 406 195 42 17 chr11 124034633 124034660 -26748893 + L1M4 LINE L1 5184 5209 -937 * 827 212 47 90 chr11 124034659 124035046 -26748507 + L1M4 LINE L1 5417 5786 -388 4803 190 57 14 chr11 124035051 124036607 -26746946 + L1MC2 LINE L1 4712 6344 0 353 212 61 0 chr11 124036610 124036709 -26746844 - L1 LINE L1 -1053 5275 5171 3102 150 13 56 chr11 124036711 124037410 -26746143 - L1 LINE L1 -1243 5085 4417 4889 217 39 48 chr11 124037414 124039432 -26744121 - L1 LINE L1 -3787 2541 557 417 97 0 0 chr11 124041471 124041533 -26742020 - L1MB2 LINE L1 -6 6165 6104 2541 219 20 4 chr11 124041579 124042263 -26741290 - L1MEc LINE L1 -2879 3336 2642 3429 168 22 38 chr11 124042274 124043035 -26740518 - L1MB4 LINE L1 -51 6129 5381 1246 271 117 27 chr11 124043050 124043905 -26739648 - L1MEc LINE L1 -4461 1935 1004 1499 291 63 40 chr11 124043925 124044606 -26738947 - L1MEc LINE L1 -5663 733 37 22 56 0 0 chr11 124044651 124044687 -26738866 + AT_rich Low_complexity Low_complexity 1 36 0 5604 120 13 32 chr11 124044702 124045620 -26737933 - L1MC1 LINE L1 -5 6328 5428 367 316 35 40 chr11 124045745 124045919 -26737634 - MIR SINE MIR 0 262 90 4856 121 170 62 chr11 124045921 124047071 -26736482 - MER52C LTR ERV1 -3 1275 1 387 225 45 0 chr11 124047071 124047160 -26736393 - MIR SINE MIR -169 93 1 238 289 100 11 chr11 124047434 124047614 -26735939 - HAL1 LINE L1 -462 2045 1850 2575 271 122 35 chr11 124047621 124049273 -26734280 - HAL1 LINE L1 -710 1797 2 608 358 52 55 chr11 124049717 124050377 -26733176 + L2 LINE L2 1836 2493 -821 293 380 55 25 chr11 124051002 124051276 -26732277 + L2 LINE L2 2484 2765 -549 1634 153 87 7 chr11 124051906 124052181 -26731372 - AluJb SINE Alu -15 297 1 1776 167 3 7 chr11 124052577 124052864 -26730689 + AluJo SINE Alu 1 286 -26 1893 220 95 55 chr11 124053106 124053780 -26729773 - L1ME2 LINE L1 -19 6145 5445 184 324 69 10 chr11 124053810 124053912 -26729641 + MER5A DNA MER1_type 75 182 -7 711 289 60 13 chr11 124054629 124054861 -26728692 - MIR SINE MIR -8 254 12 305 208 44 132 chr11 124055268 124055427 -26728126 + L1ME LINE L1 733 877 -5193 275 240 19 29 chr11 124055435 124055539 -26728014 + L1ME LINE L1 936 1038 -5032 25 83 0 0 chr11 124055757 124055817 -26727736 + AT_rich Low_complexity Low_complexity 1 60 0 1797 118 14 14 chr11 124055890 124056170 -26727383 + MER1B DNA MER1_type 60 339 0 52 69 0 0 chr11 124056268 124056369 -26727184 + AT_rich Low_complexity Low_complexity 1 101 0 405 301 86 14 chr11 124056532 124057021 -26726532 - L1MEd LINE L1 -3228 3154 2631 890 129 96 6 chr11 124057497 124057675 -26725878 + L1MA8 LINE L1 6095 6288 -3 420 300 117 28 chr11 124057755 124058462 -26725091 - L1MEd LINE L1 -4006 2557 1788 34 24 0 0 chr11 124058462 124058503 -26725050 + AT_rich Low_complexity Low_complexity 1 41 0 296 144 25 25 chr11 124058563 124058681 -26724872 + (TA)n Simple_repeat Simple_repeat 1 118 0 398 266 44 47 chr11 124058691 124059077 -26724476 - L1MEd LINE L1 -4650 1732 1266 333 300 108 41 chr11 124059285 124059628 -26723925 - L1MEd LINE L1 -5313 1059 694 203 0 0 36 chr11 124060410 124060438 -26723115 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 1868 142 40 31 chr11 124060512 124060864 -26722689 + THE1B LTR MaLR 1 355 -9 1423 174 123 3 chr11 124061017 124061310 -26722243 + MER2 DNA MER2_type 17 344 -1 23 33 0 0 chr11 124061479 124061509 -26722044 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr11 124061667 124061691 -26721862 + (T)n Simple_repeat Simple_repeat 1 24 0 666 201 87 13 chr11 124061824 124061973 -26721580 + FRAM SINE Alu 1 157 -19 3991 111 16 14 chr11 124062028 124062669 -26720884 - L1MA5A LINE L1 -4 6293 5652 2320 103 7 0 chr11 124062803 124063103 -26720450 - AluSx SINE Alu -10 302 1 1979 147 36 28 chr11 124065172 124065533 -26718020 - THE1B LTR MaLR 0 364 1 273 298 74 16 chr11 124067208 124067329 -26716224 + L2 LINE L2 1060 1187 -2127 370 251 228 67 chr11 124067329 124067806 -26715747 + L2 LINE L2 2762 3311 -2 186 139 28 0 chr11 124068751 124068787 -26714766 + L2 LINE L2 3277 3313 0 779 210 102 34 chr11 124069209 124069414 -26714139 - MER20 DNA MER1_type 0 219 1 2222 118 3 0 chr11 124069582 124069888 -26713665 - AluSq SINE Alu -6 307 1 836 300 85 18 chr11 124069912 124070362 -26713191 - ERVL LTR ERVL -2024 3461 2971 2265 73 14 10 chr11 124071498 124071787 -26711766 + AluSg SINE Alu 1 290 -20 429 217 118 12 chr11 124072639 124072800 -26710753 - MIR SINE MIR -65 197 20 274 276 18 32 chr11 124073633 124073751 -26709802 - MIR SINE MIR -90 118 4 483 297 6 39 chr11 124073988 124074170 -26709383 + MIR3 SINE MIR 6 181 -27 325 239 0 0 chr11 124077431 124077498 -26706055 - L2 LINE L2 0 3313 3247 209 253 121 30 chr11 124077994 124078093 -26705460 + MIR3 SINE MIR 71 178 -30 909 151 200 0 chr11 124078102 124078287 -26705266 - L1M4 LINE L1 -423 5755 5534 465 179 200 7 chr11 124078478 124078618 -26704935 - MER5A DNA MER1_type -3 186 20 482 303 102 40 chr11 124078949 124079272 -26704281 - ERVL LTR ERVL -865 4899 4557 346 280 10 0 chr11 124079785 124079885 -26703668 - MIR SINE MIR 0 262 162 184 333 44 44 chr11 124079957 124080047 -26703506 + L2 LINE L2 3148 3237 -35 981 260 4 0 chr11 124080097 124080332 -26703221 - MIR SINE MIR -22 240 5 648 300 100 39 chr11 124081118 124081578 -26701975 - LTR33 LTR ERVL -10 511 24 773 188 0 25 chr11 124082023 124082183 -26701370 + MER5A DNA MER1_type 27 182 -7 1960 242 15 13 chr11 124082561 124083020 -26700533 + LTR40b LTR ERVL 1 460 -2 1245 210 64 52 chr11 124083243 124083586 -26699967 - MLT1A1 LTR MaLR 0 365 19 437 238 79 73 chr11 124083588 124083752 -26699801 - MER5B DNA MER1_type -10 168 4 313 203 0 0 chr11 124083755 124083819 -26699734 - MIR3 SINE MIR -48 160 97 1137 233 161 104 chr11 124084406 124084575 -26698978 - L1MC4 LINE L1 0 8042 7884 2151 128 3 0 chr11 124084575 124084872 -26698681 - AluSx SINE Alu -14 298 1 1137 233 161 104 chr11 124084872 124085545 -26698008 - L1MC4 LINE L1 -158 7884 7152 592 282 103 70 chr11 124085893 124086570 -26696983 - L2 LINE L2 -25 3247 2553 1687 230 35 16 chr11 124087736 124088195 -26695358 - MLT1J LTR MaLR 0 511 12 218 32 32 0 chr11 124088423 124088454 -26695099 + (TCCA)n Simple_repeat Simple_repeat 2 33 0 216 360 63 27 chr11 124088461 124088572 -26694981 - L2 LINE L2 -17 3255 3141 446 325 114 20 chr11 124088639 124088894 -26694659 - L2 LINE L2 -7 3265 2987 390 227 70 23 chr11 124091941 124091997 -26691556 + MER112 DNA MER1_type 1 53 -207 2250 152 23 30 chr11 124091997 124092392 -26691161 - MSTD LTR MaLR 0 396 5 390 227 70 23 chr11 124092392 124092463 -26691090 + MER112 DNA MER1_type 53 134 -126 267 289 26 0 chr11 124092557 124092633 -26690920 + MER112 DNA MER1_type 181 258 -2 1122 287 113 30 chr11 124092685 124092770 -26690783 - L1MC4a LINE L1 -743 5821 5744 2136 111 16 7 chr11 124092770 124093077 -26690476 - AluSx SINE Alu -2 310 1 1122 287 113 30 chr11 124093077 124093253 -26690300 - L1MC4a LINE L1 -820 5744 5584 1910 122 43 0 chr11 124093253 124093557 -26689996 - L1PB1 LINE L1 0 6151 5835 1122 287 113 30 chr11 124093557 124094393 -26689160 - L1MC4a LINE L1 -980 5584 5142 2207 161 42 74 chr11 124094407 124094880 -26688673 - LTR32 LTR ERVL 0 471 14 2089 114 23 57 chr11 124094971 124095358 -26688195 + THE1C LTR MaLR 1 374 -1 256 331 78 9 chr11 124095401 124095824 -26687729 - L1MC4a LINE L1 -1538 5026 4575 788 236 54 33 chr11 124095956 124096197 -26687356 + MIR SINE MIR 17 262 0 356 330 69 11 chr11 124096837 124097025 -26686528 - MIR SINE MIR -12 250 52 527 274 107 12 chr11 124097219 124097387 -26686166 + MER91A DNA MER1_type 13 196 0 4001 161 95 10 chr11 124098838 124099620 -26683933 - L1MC3 LINE L1 -23 7762 6915 2617 197 104 23 chr11 124099620 124099782 -26683771 - L1M LINE L1 -825 5321 5173 2500 68 0 16 chr11 124099782 124100090 -26683463 - AluSp SINE Alu -9 304 2 2617 197 104 23 chr11 124100090 124100532 -26683021 - L1M LINE L1 -973 5173 4644 1445 239 30 27 chr11 124100532 124100905 -26682648 - MLT1A2 LTR MaLR 0 374 1 2617 197 104 23 chr11 124100905 124101096 -26682457 - L1M LINE L1 -1502 4644 4470 1261 162 37 18 chr11 124101096 124101410 -26682143 - L1MCb LINE L1 -4675 2070 1563 2122 207 21 25 chr11 124101416 124101899 -26681654 - L1MCb LINE L1 -5008 1038 551 952 281 114 26 chr11 124102173 124102717 -26680836 - L1MCb LINE L1 -5704 341 1 218 250 42 56 chr11 124103490 124103562 -26679991 + MIR SINE MIR 73 143 -119 * 367 281 58 0 chr11 124103557 124103696 -26679857 - MIR SINE MIR -3 259 113 225 268 0 14 chr11 124103725 124103796 -26679757 + MIR SINE MIR 180 249 -13 370 275 86 12 chr11 124103845 124104051 -26679502 - L1ME3A LINE L1 -6 6164 5934 4007 46 2 33 chr11 124104077 124104460 -26679093 - L1PA5 LINE L1 0 6154 5790 2263 99 0 13 chr11 124104460 124104763 -26678790 - AluY SINE Alu -11 300 2 4007 46 2 33 chr11 124104763 124104897 -26678656 - L1PA5 LINE L1 -364 5790 5653 1794 221 56 27 chr11 124104960 124105408 -26678145 - MLT1C LTR MaLR 0 467 7 188 232 95 53 chr11 124105483 124105578 -26677975 - L2 LINE L2 -4 3268 3170 444 202 138 60 chr11 124108085 124108406 -26675147 - MLT1G1 LTR MaLR -24 571 139 285 149 0 60 chr11 124108465 124108532 -26675021 - MLT1G1 LTR MaLR -460 82 20 282 200 11 21 chr11 124108679 124108774 -26674779 + CT-rich Low_complexity Low_complexity 4 97 0 2729 178 44 39 chr11 124108784 124109380 -26674173 - L1MB8 LINE L1 -36 6142 5544 318 287 175 30 chr11 124110638 124110906 -26672647 + L3 LINE CR1 1257 1563 -14 1924 155 0 14 chr11 124111010 124111300 -26672253 - AluSx SINE Alu -24 288 3 302 199 104 145 chr11 124111896 124112193 -26671360 + L2 LINE L2 3027 3311 -2 740 295 65 34 chr11 124113727 124114175 -26669378 - L1ME4a LINE L1 -45 6076 5615 478 240 47 33 chr11 124115156 124115306 -26668247 + MER5A DNA MER1_type 1 152 -37 380 229 9 0 chr11 124115498 124115607 -26667946 + (TG)n Simple_repeat Simple_repeat 1 110 0 771 209 40 6 chr11 124116046 124116223 -26667330 + MIR SINE MIR 30 212 -50 1340 162 46 217 chr11 124116223 124116495 -26667058 + L1P LINE L1 4752 5069 -1077 1124 76 0 0 chr11 124116495 124116627 -26666926 + AluSq/x SINE Alu 1 132 -181 1971 151 16 3 chr11 124116630 124116935 -26666618 + AluSx SINE Alu 1 309 -3 1340 162 46 217 chr11 124116935 124117224 -26666329 + L1P LINE L1 5071 5329 -817 1889 71 0 0 chr11 124117369 124117595 -26665958 - AluSc SINE Alu -10 299 74 429 19 0 19 chr11 124117549 124117602 -26665951 - AluSc SINE Alu -190 119 68 3464 317 87 37 chr11 124118330 124120281 -26663272 + L2 LINE L2 702 2749 -565 377 307 133 21 chr11 124120468 124120709 -26662844 + L2 LINE L2 3005 3272 -41 410 295 20 79 chr11 124120990 124121207 -26662346 + MIR SINE MIR 3 206 -56 791 295 29 16 chr11 124122584 124122828 -26660725 + MIR SINE MIR 12 258 -4 2210 101 0 3 chr11 124123246 124123544 -26660009 + AluSq SINE Alu 1 297 -16 520 242 32 74 chr11 124124150 124124340 -26659213 + MIR SINE MIR 9 190 -72 516 316 58 9 chr11 124124643 124124868 -26658685 - MIR SINE MIR -11 251 16 373 264 69 102 chr11 124126977 124127193 -26656360 + MIR SINE MIR 47 255 -7 410 208 42 21 chr11 124127944 124128040 -26655513 + MIR SINE MIR 56 153 -109 1219 181 27 43 chr11 124128404 124128859 -26654694 + MLT1D LTR MaLR 1 505 0 2028 171 68 114 chr11 124129038 124129628 -26653925 - MLT1F1 LTR MaLR -3 564 2 1447 95 0 0 chr11 124129888 124130077 -26653476 + AluSc SINE Alu 1 189 -120 2418 25 0 0 chr11 124130505 124130828 -26652725 - AluYa5 SINE Alu 0 323 1 1306 88 0 0 chr11 124131422 124131592 -26651961 - AluSp SINE Alu -10 303 134 1002 56 8 0 chr11 124131592 124131717 -26651836 + AluSp SINE Alu 16 141 -172 946 261 43 9 chr11 124131927 124132310 -26651243 + LTR16C LTR ERVL 1 440 -51 836 252 44 13 chr11 124132405 124132631 -26650922 + MIR SINE MIR 6 238 -24 204 342 42 42 chr11 124132659 124132779 -26650774 + L2 LINE L2 2403 2522 -792 1954 155 113 6 chr11 124132808 124133170 -26650383 + MSTA LTR MaLR 1 401 -27 305 100 20 0 chr11 124133171 124133221 -26650332 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 2522 44 0 16 chr11 124133366 124133682 -26649871 - AluY SINE Alu 0 311 1 238 217 83 0 chr11 124133704 124133764 -26649789 - L2 LINE L2 0 3313 3249 433 293 38 45 chr11 124134024 124134181 -26649372 + MIR SINE MIR 57 212 -50 2887 262 104 40 chr11 124135726 124137762 -26645791 + L1ME LINE L1 22 2136 -3944 432 315 82 11 chr11 124137772 124137956 -26645597 + MIR SINE MIR 53 249 -13 272 261 7 99 chr11 124138671 124138813 -26644740 - L2 LINE L2 -5 3308 3180 194 362 97 46 chr11 124139788 124139984 -26643569 + L2 LINE L2 2985 3190 -82 2507 157 47 0 chr11 124140849 124141256 -26642297 - MSTB LTR MaLR 0 426 1 688 318 39 55 chr11 124141269 124141957 -26641596 - L2 LINE L2 -5 3267 2589 285 122 0 0 chr11 124141975 124142016 -26641537 - MSTB LTR MaLR 0 426 386 1841 143 65 0 chr11 124142016 124142341 -26641212 + AluSx SINE Alu 1 344 0 5477 107 18 15 chr11 124142476 124143134 -26640419 + L1PA16 LINE L1 5297 5952 -214 2311 94 0 0 chr11 124143134 124143443 -26640110 + AluSq SINE Alu 1 309 -4 5477 107 18 15 chr11 124143443 124143477 -26640076 + L1PA16 LINE L1 5952 5984 -182 1743 123 66 81 chr11 124143477 124143632 -26639921 + THE1C LTR MaLR 1 157 -218 1961 125 0 25 chr11 124143632 124143952 -26639601 - AluSx SINE Alu 0 312 1 1743 123 66 81 chr11 124143952 124144177 -26639376 + THE1C LTR MaLR 157 375 0 5477 107 18 15 chr11 124144177 124144340 -26639213 + L1PA16 LINE L1 5984 6155 -11 252 93 80 0 chr11 124144343 124144418 -26639135 + (TA)n Simple_repeat Simple_repeat 1 81 0 361 307 0 68 chr11 124145310 124145473 -26638080 - MIR SINE MIR -16 246 95 1698 221 78 49 chr11 124145969 124146458 -26637095 + MLT1D LTR MaLR 1 503 -2 1452 253 53 34 chr11 124146645 124147139 -26636414 - MLT1J LTR MaLR -8 503 1 382 317 124 31 chr11 124147223 124147579 -26635974 + L3 LINE CR1 1056 1444 -133 331 250 0 12 chr11 124148358 124148438 -26635115 - MLT1K LTR MaLR 0 588 510 620 253 45 15 chr11 124149448 124149646 -26633907 - LTR67 LTR ERVL 0 557 354 625 288 0 19 chr11 124149774 124149934 -26633619 - LTR67 LTR ERVL -399 158 2 877 272 47 4 chr11 124150489 124150724 -26632829 - MIR SINE MIR 0 262 18 606 334 111 25 chr11 124151814 124152087 -26631466 - L2 LINE L2 -2 3270 2951 1933 153 65 6 chr11 124152087 124152427 -26631126 + MLT1A1 LTR MaLR 4 363 -2 606 334 111 25 chr11 124152427 124152551 -26631002 - L2 LINE L2 -321 2951 2839 234 260 13 26 chr11 124153449 124153526 -26630027 + GA-rich Low_complexity Low_complexity 2 77 0 2092 79 0 4 chr11 124154388 124154665 -26628888 - L1PB1 LINE L1 -2 6149 5874 334 224 9 46 chr11 124154765 124154874 -26628679 - L1MC4 LINE L1 -1339 6983 1996 198 191 0 0 chr11 124154883 124154925 -26628628 + (CA)n Simple_repeat Simple_repeat 2 43 0 2649 91 12 39 chr11 124154925 124155242 -26628311 - L1P5 LINE L1 -373 5778 5473 2121 99 3 3 chr11 124155242 124155536 -26628017 - AluY SINE Alu -17 294 1 2649 91 12 39 chr11 124155536 124155624 -26627929 - L1P5 LINE L1 -678 5473 5384 241 95 71 0 chr11 124155617 124155659 -26627894 + L1P LINE L1 5346 5390 -761 * 3022 213 52 3 chr11 124156571 124156966 -26626587 + MER82 DNA MER2_type 2 439 -214 1632 188 0 10 chr11 124156966 124157259 -26626294 + AluJo SINE Alu 5 294 -18 3022 213 52 3 chr11 124157259 124157484 -26626069 + MER82 DNA MER2_type 439 652 -1 277 297 103 63 chr11 124157917 124158092 -26625461 - L3b LINE CR1 -81 1502 1321 269 291 148 20 chr11 124158262 124158426 -26625127 - MIR SINE MIR -50 212 29 322 286 119 113 chr11 124158788 124158973 -26624580 + MER91A DNA MER1_type 10 195 -1 342 270 11 6 chr11 124159416 124159590 -26623963 + (TATG)n Simple_repeat Simple_repeat 3 177 0 691 304 83 6 chr11 124159753 124160066 -26623487 + LTR33 LTR ERVL 8 344 -177 523 190 10 20 chr11 124160098 124160198 -26623355 + LTR33 LTR ERVL 423 521 0 348 257 49 75 chr11 124160805 124161077 -26622476 - MER34 LTR ERV1 0 542 334 2430 175 31 7 chr11 124161884 124162336 -26621217 + MLT2C2 LTR ERVL 1 463 -1 1898 90 12 43 chr11 124163489 124163824 -26619729 - MER51B LTR ERV1 0 377 3 317 243 40 0 chr11 124163856 124163930 -26619623 + L2 LINE L2 3193 3269 -3 222 319 47 47 chr11 124163974 124164143 -26619410 + MIR SINE MIR 68 236 -26 1465 209 72 34 chr11 124164560 124164977 -26618576 + MER63B DNA MER1_type 4 436 0 1237 284 35 35 chr11 124165151 124165573 -26617980 + MLT1J2 LTR MaLR 29 450 0 2386 131 20 3 chr11 124165662 124166014 -26617539 + MER83C LTR ERV1 5 362 -11 255 256 26 26 chr11 124166186 124166264 -26617289 - MLT1K LTR MaLR 0 588 511 230 256 70 35 chr11 124166554 124166640 -26616913 - MLT1K LTR MaLR -313 275 187 1008 193 79 31 chr11 124167097 124167325 -26616228 - MER96B DNA MER1_type? -176 241 3 26 0 0 0 chr11 124167428 124167454 -26616099 + AT_rich Low_complexity Low_complexity 1 26 0 540 273 8 8 chr11 124167463 124167584 -26615969 - LTR28 LTR ERV1 0 1020 900 1828 211 132 64 chr11 124167622 124168364 -26615189 - LTR1B LTR ERV1 -37 983 1 343 228 38 0 chr11 124168508 124168587 -26614966 - L1ME4a LINE L1 -4 6117 6036 685 264 30 51 chr11 124168588 124168884 -26614669 - MER34B LTR ERV1 0 565 276 756 295 70 29 chr11 124169143 124169560 -26613993 - L1ME4a LINE L1 -174 5947 5514 180 0 0 0 chr11 124170986 124171006 -26612547 + (T)n Simple_repeat Simple_repeat 1 20 0 252 86 0 0 chr11 124171138 124171173 -26612380 + (A)n Simple_repeat Simple_repeat 1 35 0 217 279 147 62 chr11 124172045 124172174 -26611379 + L2 LINE L2 256 395 -2919 1547 226 46 20 chr11 124172186 124172536 -26611017 + MLT1A1 LTR MaLR 6 364 -1 2132 231 72 22 chr11 124172684 124173238 -26610315 + MER74B LTR ERVL 41 622 0 183 80 0 0 chr11 124173328 124173353 -26610200 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 2035 136 3 3 chr11 124173661 124173956 -26609597 - AluSq SINE Alu -18 295 1 427 39 0 0 chr11 124173960 124174012 -26609541 - AluSq/x SINE Alu -180 133 82 225 196 0 0 chr11 124174012 124174058 -26609495 + T-rich Low_complexity Low_complexity 1 46 0 7880 22 0 0 chr11 124174115 124175191 -26608362 - L1PA3 LINE L1 -3 6152 5076 579 172 11 0 chr11 124175191 124175284 -26608269 - AluS SINE Alu -217 95 2 180 0 0 0 chr11 124175291 124175311 -26608242 + (T)n Simple_repeat Simple_repeat 1 20 0 2406 87 13 0 chr11 124175451 124175751 -26607802 - AluSx SINE Alu -8 304 1 305 293 170 33 chr11 124176723 124176935 -26606618 - MIR SINE MIR -6 256 16 513 283 17 12 chr11 124176956 124177129 -26606424 - MER5B DNA MER1_type -4 174 1 260 279 213 0 chr11 124177313 124177435 -26606118 - MIR SINE MIR -66 196 49 715 298 102 14 chr11 124177580 124177855 -26605698 - MLT1I LTR MaLR -8 401 103 501 251 99 11 chr11 124178461 124178652 -26604901 - L2 LINE L2 -12 3301 3094 294 143 0 0 chr11 124178667 124178730 -26604823 + (TG)n Simple_repeat Simple_repeat 1 63 0 190 303 97 46 chr11 124179707 124179902 -26603651 + MIR SINE MIR 2 206 -56 333 200 56 44 chr11 124180076 124180166 -26603387 - L3 LINE CR1 -1 1576 1486 237 169 0 34 chr11 124180274 124180333 -26603220 + L2 LINE L2 3255 3311 -2 393 343 45 6 chr11 124180340 124180518 -26603035 - L3 LINE CR1 -85 1492 1308 280 354 92 0 chr11 124180561 124180691 -26602862 - L3 LINE CR1 -407 1170 1029 423 224 30 85 chr11 124180731 124180896 -26602657 - MIR SINE MIR -52 210 55 273 261 0 0 chr11 124180927 124180996 -26602557 - L2 LINE L2 0 3313 3245 331 183 0 0 chr11 124181225 124181285 -26602268 + L2 LINE L2 3252 3311 -2 1081 344 75 12 chr11 124181455 124182030 -26601523 - L3 LINE CR1 -534 1043 433 190 269 0 64 chr11 124182829 124182907 -26600646 + L2 LINE L2 3195 3267 -5 734 261 74 10 chr11 124183496 124183699 -26599854 - MIR SINE MIR 0 262 47 187 196 0 107 chr11 124183707 124183763 -26599790 - L2 LINE L2 -74 3239 3190 350 340 48 0 chr11 124184368 124184515 -26599038 - MER91A DNA MER1_type -21 175 22 226 273 52 13 chr11 124185379 124185456 -26598097 - L2 LINE L2 -2 3311 3232 193 220 88 121 chr11 124186541 124186723 -26596830 - MIR SINE MIR -50 212 37 296 226 12 48 chr11 124186955 124187039 -26596514 - MIR3 SINE MIR -27 181 101 21 57 0 0 chr11 124188487 124188522 -26595031 + AT_rich Low_complexity Low_complexity 1 35 0 522 176 96 24 chr11 124189279 124189404 -26594149 - MER69 DNA AcHobo -4 2522 2389 204 97 0 0 chr11 124189495 124189526 -26594027 + (CA)n Simple_repeat Simple_repeat 1 31 0 264 247 25 25 chr11 124190953 124191034 -26592519 - MIR SINE MIR -29 233 153 208 333 69 0 chr11 124191163 124191265 -26592288 - MIR SINE MIR -70 192 84 2096 106 31 3 chr11 124191734 124192026 -26591527 - AluSx SINE Alu -12 300 1 2087 208 108 10 chr11 124192395 124192885 -26590668 - MLT1F LTR MaLR -4 538 1 1675 223 94 29 chr11 124194093 124194581 -26588972 + MLT2B1 LTR ERVL 1 520 0 314 323 68 16 chr11 124197410 124197602 -26585951 - MIR SINE MIR -5 257 56 265 314 127 0 chr11 124249590 124249708 -26533845 - L2 LINE L2 0 3313 3181 248 348 6 85 chr11 124249743 124249907 -26533646 + L3 LINE CR1 1417 1567 -10 338 0 0 23 chr11 124250500 124250543 -26533010 + (TG)n Simple_repeat Simple_repeat 2 43 0 2291 104 0 23 chr11 124250692 124251000 -26532553 + AluSx SINE Alu 1 301 -11 1094 162 48 13 chr11 124252293 124252521 -26531032 + MER96B DNA MER1_type? 1 236 -181 228 371 49 19 chr11 124252717 124252796 -26530757 - L2 LINE L2 -245 3068 2993 2862 139 11 27 chr11 124252796 124253270 -26530283 + MLT1C LTR MaLR 2 467 0 228 371 49 19 chr11 124253270 124253395 -26530158 - L2 LINE L2 -320 2993 2858 253 315 0 62 chr11 124255259 124255389 -26528164 + MIR SINE MIR 59 180 -82 852 216 115 117 chr11 124255955 124256330 -26527223 + MLT1A1 LTR MaLR 1 365 0 235 328 17 17 chr11 124256526 124256645 -26526908 + L1ME LINE L1 5524 5642 -520 22 0 0 0 chr11 124257124 124257146 -26526407 + AT_rich Low_complexity Low_complexity 1 22 0 559 108 10 17 chr11 124257197 124257308 -26526245 - MLT1A1 LTR MaLR -292 73 1 230 333 68 8 chr11 124258019 124258151 -26525402 - LTR67 LTR ERVL 0 557 418 1992 235 52 28 chr11 124258275 124258777 -26524776 + MLT1F LTR MaLR 12 525 -17 235 314 59 17 chr11 124259632 124259750 -26523803 + L2 LINE L2 3148 3270 -2 2272 66 11 14 chr11 124260754 124261040 -26522513 - AluY SINE Alu -5 306 22 182 300 90 20 chr11 124261362 124261462 -26522091 + L2 LINE L2 2211 2317 -997 251 340 42 21 chr11 124261812 124261956 -26521597 - LTR67 LTR ERVL -315 242 96 455 277 78 72 chr11 124262025 124262386 -26521167 - MLT1K LTR MaLR 0 588 226 833 307 66 4 chr11 124262796 124263070 -26520483 - LTR16C LTR ERVL -80 411 121 22 0 0 0 chr11 124264618 124264640 -26518913 + AT_rich Low_complexity Low_complexity 1 22 0 198 164 33 16 chr11 124264755 124264816 -26518737 + CT-rich Low_complexity Low_complexity 4 65 0 2143 84 146 19 chr11 124267098 124267421 -26516132 + THE1B LTR MaLR 1 364 0 26 0 0 0 chr11 124268293 124268319 -26515234 + AT_rich Low_complexity Low_complexity 1 26 0 629 178 18 49 chr11 124268374 124268537 -26515016 - L1MA10 LINE L1 -2 6332 6175 2749 224 31 7 chr11 124268549 124269243 -26514310 - L1ME1 LINE L1 -270 5965 5257 5066 245 82 58 chr11 124269514 124271391 -26512162 - L1ME1 LINE L1 -1134 5081 3252 2567 131 22 80 chr11 124271391 124271843 -26511710 + MSTB LTR MaLR 1 426 0 5066 245 82 58 chr11 124271843 124272798 -26510755 - L1ME1 LINE L1 -2963 3252 2322 891 167 4 151 chr11 124272798 124273050 -26510503 - MER58C DNA MER1_type 0 215 1 5066 245 82 58 chr11 124273050 124274620 -26508933 - L1ME1 LINE L1 -3893 2322 675 271 134 72 0 chr11 124274935 124275032 -26508521 + (TA)n Simple_repeat Simple_repeat 1 104 0 1592 293 83 18 chr11 124275124 124275715 -26507838 - MLT1G LTR MaLR 0 590 1 416 328 60 86 chr11 124275715 124276264 -26507289 - MLT1G-int LTR MaLR 0 1371 837 2169 113 3 26 chr11 124276468 124276778 -26506775 + AluSp SINE Alu 1 303 -10 544 247 50 6 chr11 124277282 124277441 -26506112 - MLT1G1 LTR MaLR -431 160 2 769 379 73 35 chr11 124278092 124278867 -26504686 - L2 LINE L2 -233 3039 2227 570 284 28 0 chr11 124280022 124280163 -26503390 + MER117 DNA MER1_type 11 155 -42 270 56 0 0 chr11 124280721 124280757 -26502796 + (TG)n Simple_repeat Simple_repeat 1 36 0 226 279 16 16 chr11 124282783 124282844 -26500709 - L2 LINE L2 0 3272 3212 22 0 0 0 chr11 124282856 124282878 -26500675 + AT_rich Low_complexity Low_complexity 1 22 0 1767 122 19 80 chr11 124282986 124283354 -26500199 - MER4A LTR ERV1 0 664 261 562 100 89 0 chr11 124283354 124283444 -26500109 - MER4A LTR ERV1 -566 98 1 294 272 59 22 chr11 124283516 124283652 -26499901 + MIR3 SINE MIR 13 153 -55 230 340 120 0 chr11 124284502 124284602 -26498951 + MER91A DNA MER1_type 42 153 -43 431 17 0 51 chr11 124284609 124284668 -26498885 + L1PA3 LINE L1 6100 6155 0 257 248 7 0 chr11 124285077 124285159 -26498394 + (CA)n Simple_repeat Simple_repeat 1 86 -68 1290 270 123 2 chr11 124285159 124285559 -26497994 + LTR16A LTR ERVL 1 448 -2 257 248 7 0 chr11 124285559 124285629 -26497924 + (CA)n Simple_repeat Simple_repeat 86 154 0 202 304 155 20 chr11 124286442 124286590 -26496963 + MIR SINE MIR 19 186 -76 274 278 0 0 chr11 124286723 124286795 -26496758 + L2 LINE L2 3242 3313 0 367 305 112 77 chr11 124287257 124287660 -26495893 + L2 LINE L2 2854 3270 -2 243 258 8 92 chr11 124288386 124288506 -26495047 - L3b LINE CR1 -154 1429 1320 429 291 139 13 chr11 124288863 124289021 -26494532 - MIR3 SINE MIR -11 197 20 800 231 36 27 chr11 124289031 124289252 -26494301 - MIR SINE MIR -4 258 36 497 94 12 0 chr11 124289981 124290066 -26493487 + (TG)n Simple_repeat Simple_repeat 1 86 0 217 183 0 0 chr11 124290405 124290443 -26493110 - L2 LINE L2 -34 3279 3201 333 302 78 0 chr11 124291193 124291322 -26492231 + L2 LINE L2 3134 3272 0 656 234 15 58 chr11 124291458 124291663 -26491890 - MIR SINE MIR -14 248 53 189 0 0 0 chr11 124292781 124292802 -26490751 + (A)n Simple_repeat Simple_repeat 1 21 0 442 328 110 49 chr11 124292850 124293361 -26490192 + L2 LINE L2 2763 3308 -5 420 279 78 0 chr11 124293389 124293518 -26490035 + L2 LINE L2 3133 3271 -1 901 191 38 177 chr11 124294884 124295093 -26488460 - MLT1A2 LTR MaLR -22 352 173 213 94 0 0 chr11 124295093 124295125 -26488428 + (GA)n Simple_repeat Simple_repeat 2 33 0 307 167 17 17 chr11 124295141 124295201 -26488352 - MLT1A2 LTR MaLR -212 162 103 949 308 19 22 chr11 124295877 124296195 -26487358 - L3 LINE CR1 -548 1029 713 480 273 7 22 chr11 124296727 124296866 -26486687 + MIR SINE MIR 2 138 -124 1044 240 114 80 chr11 124297198 124297735 -26485818 - MLT1H1 LTR MaLR 0 555 1 207 0 0 0 chr11 124298453 124298476 -26485077 + (CTG)n Simple_repeat Simple_repeat 1 23 0 319 200 18 74 chr11 124298483 124298660 -26484893 - MIR SINE MIR 0 262 31 185 309 29 15 chr11 124299447 124299515 -26484038 + L3 LINE CR1 567 635 -942 353 286 97 27 chr11 124299534 124299753 -26483800 - L1ME3A LINE L1 -6 6164 5925 1877 244 69 36 chr11 124299890 124300007 -26483546 - L1ME3A LINE L1 -248 5922 5810 1719 118 29 99 chr11 124300007 124300321 -26483232 - AluSx SINE Alu -16 296 5 1877 244 69 36 chr11 124300321 124301072 -26482481 - L1ME3A LINE L1 -360 5810 5023 * 4548 245 27 34 chr11 124301069 124303214 -26480339 + L1PA13 LINE L1 533 2256 -5325 13273 166 15 24 chr11 124303216 124306311 -26477242 + L1PA13 LINE L1 4485 7597 -4 1530 277 43 56 chr11 124306357 124307209 -26476344 - L1ME3A LINE L1 -1961 4185 3345 * 4165 148 20 12 chr11 124307208 124307951 -26475602 - L1PBa LINE L1 -4723 2140 1392 675 267 5 0 chr11 124307948 124308139 -26475414 - L1PBa LINE L1 -6666 197 6 * 1189 134 43 0 chr11 124308275 124308462 -26475091 - MLT2A2 LTR ERVL -86 367 173 475 184 8 32 chr11 124308462 124308587 -26474966 - L1M4 LINE L1 -837 5309 5188 286 23 23 23 chr11 124308610 124308654 -26474899 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 440 62 0 47 chr11 124308782 124308846 -26474707 - HY4 scRNA scRNA -3 90 30 23 78 0 0 chr11 124309316 124309367 -26474186 + AT_rich Low_complexity Low_complexity 1 51 0 198 0 0 0 chr11 124309408 124309430 -26474123 + (TTA)n Simple_repeat Simple_repeat 3 24 0 43288 36 23 1 chr11 124309430 124315428 -26468125 - L1PA3 LINE L1 -18 6137 7 1132 231 97 38 chr11 124315442 124315867 -26467686 - L1M4 LINE L1 -952 5194 4745 1150 270 153 24 chr11 124315932 124316388 -26467165 + MLT1H1 LTR MaLR 41 555 0 1725 195 107 8 chr11 124316530 124316884 -26466669 + MSTD LTR MaLR 8 396 0 268 322 116 8 chr11 124316884 124317005 -26466548 - L2 LINE L2 -6 3266 3133 454 277 42 42 chr11 124317511 124317677 -26465876 - MIR SINE MIR -36 226 61 578 183 67 0 chr11 124318310 124318430 -26465123 + MIR SINE MIR 85 212 -50 271 299 60 8 chr11 124319056 124319190 -26464363 + MIR3 SINE MIR 45 185 -23 249 330 110 28 chr11 124319590 124319817 -26463736 + MIR SINE MIR 17 262 0 2407 78 10 0 chr11 124321061 124321369 -26462184 + AluY SINE Alu 1 311 0 207 0 0 0 chr11 124321540 124321563 -26461990 + (T)n Simple_repeat Simple_repeat 1 23 0 357 231 15 0 chr11 124321768 124321833 -26461720 + MER2 DNA MER2_type 280 345 0 842 237 82 9 chr11 124322084 124322316 -26461237 + MIR SINE MIR 2 250 -12 467 319 99 40 chr11 124322414 124322687 -26460866 + MER115 DNA AcHobo 144 432 -261 1953 163 48 25 chr11 124323561 124323917 -26459636 + THE1B LTR MaLR 1 364 0 229 323 26 18 chr11 124324615 124324729 -26458824 - MIR SINE MIR -63 145 47 321 240 24 40 chr11 124325711 124325836 -26457717 - MLT1J LTR MaLR -64 447 325 197 118 29 0 chr11 124325868 124325902 -26457651 + MER5B DNA MER1_type 144 178 0 286 153 0 34 chr11 124326067 124326126 -26457427 - L2 LINE L2 -183 3089 3033 326 343 29 0 chr11 124326192 124326329 -26457224 + MIR SINE MIR 119 259 -3 276 77 0 0 chr11 124326520 124326559 -26456994 + (TG)n Simple_repeat Simple_repeat 2 40 0 252 0 0 0 chr11 124327098 124327126 -26456427 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 423 0 0 0 chr11 124327125 124327172 -26456381 + (CA)n Simple_repeat Simple_repeat 1 47 0 240 35 0 0 chr11 124327618 124327647 -26455906 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 272 286 81 64 chr11 124328246 124328480 -26455073 - L2 LINE L2 -56 3216 2979 420 195 13 0 chr11 124329098 124329175 -26454378 + L2 LINE L2 3180 3257 -56 183 129 0 0 chr11 124329210 124329241 -26454312 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 488 347 34 22 chr11 124329288 124329608 -26453945 + L2 LINE L2 2587 2910 -404 372 22 0 0 chr11 124329650 124329695 -26453858 + (TG)n Simple_repeat Simple_repeat 1 45 0 207 347 13 0 chr11 124329904 124329979 -26453574 + L2 LINE L2 3197 3272 0 486 234 0 84 chr11 124330115 124330269 -26453284 - L2 LINE L2 -15 3298 3158 284 362 99 0 chr11 124331081 124331302 -26452251 - MIR SINE MIR -3 259 17 231 226 0 19 chr11 124332266 124332319 -26451234 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 533 278 141 26 chr11 124332507 124332741 -26450812 - LTR33A LTR ERVL 0 523 347 514 265 96 12 chr11 124332939 124333161 -26450392 - LTR50 LTR ERVL -308 215 1 469 301 116 27 chr11 124333893 124334152 -26449401 + MLT1K LTR MaLR 182 463 -125 283 305 184 0 chr11 124334715 124334856 -26448697 - L2 LINE L2 0 3272 3106 1765 129 19 0 chr11 124335084 124335347 -26448206 - AluY SINE Alu -15 296 29 290 315 0 27 chr11 124335848 124335959 -26447594 + MIR SINE MIR 18 125 -137 184 258 41 31 chr11 124336066 124336163 -26447390 + MIR SINE MIR 164 261 -1 498 258 63 32 chr11 124336251 124336441 -26447112 + MER117 DNA MER1_type 1 196 -1 379 264 18 36 chr11 124338028 124338138 -26445415 + MER96 DNA MER1_type? 68 175 0 308 286 111 87 chr11 124338500 124338870 -26444683 - MLT1K LTR MaLR 0 588 210 5371 131 18 20 chr11 124340245 124341361 -26442192 - L1PA16 LINE L1 -3 6163 5008 6636 188 16 118 chr11 124341367 124342090 -26441463 + L1 LINE L1 3089 3884 -2262 1157 140 1 16 chr11 124342090 124342293 -26441260 + THE1C LTR MaLR 3 198 -166 6636 188 16 118 chr11 124342293 124342305 -26441248 + L1 LINE L1 3884 3896 -2250 1648 143 101 50 chr11 124342305 124342662 -26440891 + THE1C LTR MaLR 1 375 0 6636 188 16 118 chr11 124342662 124343829 -26439724 + L1 LINE L1 3896 4980 -1166 1170 262 15 69 chr11 124344367 124344775 -26438778 - MLT1H1 LTR MaLR -169 386 1 398 290 71 24 chr11 124344942 124344987 -26438566 - MER5B DNA MER1_type 0 178 137 2318 174 56 0 chr11 124344987 124345396 -26438157 - MSTB1 LTR MaLR 0 432 1 198 91 0 0 chr11 124345401 124345434 -26438119 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 398 290 71 24 chr11 124345434 124345551 -26438002 - MER5B DNA MER1_type -44 134 2 311 254 27 0 chr11 124345721 124345831 -26437722 + (TA)n Simple_repeat Simple_repeat 2 114 0 231 279 169 37 chr11 124345993 124346129 -26437424 + MIR3 SINE MIR 44 197 -11 357 325 77 0 chr11 124346512 124346629 -26436924 - MER5A DNA MER1_type 0 189 64 287 193 0 0 chr11 124346638 124346695 -26436858 - Alu SINE Alu 0 302 246 1099 283 144 7 chr11 124347514 124347917 -26435636 + MLT1L LTR MaLR 142 599 -16 768 61 26 0 chr11 124348466 124348581 -26434972 + (TTC)n Simple_repeat Simple_repeat 2 119 0 455 132 0 0 chr11 124348582 124348650 -26434903 - AluSg/x SINE Alu -36 276 209 1382 166 0 5 chr11 124348673 124348890 -26434663 - AluSp SINE Alu -97 216 1 511 267 81 65 chr11 124349904 124350335 -26433218 + L1M4 LINE L1 3595 4032 -2114 363 294 52 0 chr11 124350337 124350473 -26433080 + L1M4 LINE L1 4108 4250 -1896 315 348 64 20 chr11 124351144 124351348 -26432205 + L1M4 LINE L1 4306 4518 -1628 1765 201 56 71 chr11 124351355 124351822 -26431731 + MLT1C LTR MaLR 7 466 -1 229 200 0 0 chr11 124351865 124351915 -26431638 - L2 LINE L2 0 3313 3264 3040 145 16 10 chr11 124351955 124352439 -26431114 - LTR45B LTR ERV1 0 489 3 656 287 178 28 chr11 124352534 124353063 -26430490 + L1M4 LINE L1 4762 5369 -777 847 214 142 67 chr11 124353177 124353564 -26429989 - MLT1D LTR MaLR 0 505 90 270 108 0 4 chr11 124353642 124353854 -26429699 + AluSx SINE Alu 1 300 0 2524 204 51 54 chr11 124353862 124354543 -26429010 - L1ME1 LINE L1 -104 6131 5453 708 188 7 0 chr11 124354531 124354669 -26428884 - L1ME1 LINE L1 -3372 2843 2705 * 4963 233 73 29 chr11 124354689 124356395 -26427158 - L1ME1 LINE L1 -4080 2316 536 1988 117 7 16 chr11 124359580 124359889 -26423664 + MSTA-int LTR MaLR 1275 1580 0 486 83 0 242 chr11 124359889 124360021 -26423532 + MSTA LTR MaLR 1 100 -328 194 233 17 0 chr11 124360393 124360453 -26423100 + GA-rich Low_complexity Low_complexity 4 64 0 441 243 106 60 chr11 124360453 124360688 -26422865 - MIR SINE MIR -6 256 11 285 347 91 0 chr11 124361001 124361122 -26422431 - L2 LINE L2 0 3313 3182 280 383 34 25 chr11 124361497 124361823 -26421730 - L2 LINE L2 -656 2658 2330 1051 266 152 40 chr11 124362315 124363118 -26420435 - MER45C DNA AcHobo -5 948 4 240 163 0 0 chr11 124364070 124364113 -26419440 + CT-rich Low_complexity Low_complexity 4 46 0 1855 159 0 10 chr11 124364129 124364419 -26419134 - AluJo SINE Alu -15 297 11 641 184 105 20 chr11 124365040 124365192 -26418361 + MIR SINE MIR 23 187 -75 898 10 0 0 chr11 124365230 124365331 -26418222 - AluYa5/8 SINE Alu -2 309 209 392 292 69 14 chr11 124365650 124365988 -26417565 + LTR16B LTR ERVL 53 460 -4 627 246 73 30 chr11 124366229 124366461 -26417092 - MIR SINE MIR 0 262 21 396 261 92 58 chr11 124366968 124367175 -26416378 + MIR SINE MIR 31 244 -18 226 203 266 0 chr11 124367351 124367415 -26416138 + MLT1J2 LTR MaLR 101 181 -269 505 246 51 29 chr11 124367450 124367625 -26415928 + MLT1J2 LTR MaLR 266 444 -6 192 284 34 91 chr11 124367661 124367749 -26415804 + MIR3 SINE MIR 110 192 -16 299 299 23 0 chr11 124368342 124368429 -26415124 + GA-rich Low_complexity Low_complexity 4 92 0 548 162 105 9 chr11 124368602 124368707 -26414846 + FLAM_C SINE Alu 13 127 -16 259 125 109 0 chr11 124368715 124368779 -26414774 + MIR SINE MIR 138 208 -54 919 175 0 0 chr11 124368818 124368940 -26414613 + MER2 DNA MER2_type 1 122 -223 445 225 0 0 chr11 124368940 124369020 -26414533 - Tigger3(Golem) DNA MER2_type -3 3026 2947 2715 129 0 3 chr11 124369020 124369393 -26414160 + MER1A DNA MER1_type 1 372 -157 774 194 56 24 chr11 124369500 124369752 -26413801 - Charlie2 DNA MER1_type -426 2436 2177 1223 254 144 24 chr11 124369756 124370510 -26413043 - Charlie2b DNA MER1_type -1521 1261 327 278 289 50 0 chr11 124370990 124371111 -26412442 + LTR67 LTR ERVL 431 557 0 829 254 69 43 chr11 124371114 124371417 -26412136 - Charlie2b DNA MER1_type -2466 316 6 189 204 20 0 chr11 124371702 124371751 -26411802 + L2 LINE L2 3264 3313 0 224 337 74 40 chr11 124371847 124372049 -26411504 + MIR SINE MIR 10 218 -44 2583 41 0 0 chr11 124375290 124375583 -26407970 + AluY SINE Alu 10 302 -9 209 108 27 0 chr11 124375986 124376023 -26407530 + (TG)n Simple_repeat Simple_repeat 2 39 0 840 222 33 6 chr11 124376156 124376336 -26407217 - MER91B DNA MER1_type -5 185 1 393 302 47 0 chr11 124377696 124377802 -26405751 + L2 LINE L2 3199 3309 -4 378 329 43 31 chr11 124377808 124377969 -26405584 - L2 LINE L2 0 3272 3110 513 229 103 52 chr11 124378872 124379334 -26404219 + MLT1H1 LTR MaLR 44 553 -2 191 256 144 40 chr11 124380595 124380720 -26402833 - L3 LINE CR1 -1164 413 276 276 279 75 3 chr11 124381378 124381532 -26402021 - MIR3 SINE MIR -1 207 6 438 320 100 20 chr11 124381857 124382057 -26401496 - L2 LINE L2 0 3313 3098 621 194 0 0 chr11 124382060 124382168 -26401385 + MER94 DNA DNA 27 134 0 223 210 16 16 chr11 124384708 124384770 -26398783 + CT-rich Low_complexity Low_complexity 1 62 0 270 0 0 0 chr11 124384784 124384814 -26398739 + (CA)n Simple_repeat Simple_repeat 2 31 0 314 258 79 34 chr11 124384930 124385019 -26398534 - MIR3 SINE MIR -11 197 105 244 289 88 50 chr11 124385270 124385429 -26398124 - MIR3 SINE MIR -40 168 4 297 0 0 0 chr11 124385828 124385861 -26397692 + (CA)n Simple_repeat Simple_repeat 1 33 0 277 291 133 18 chr11 124385964 124386129 -26397424 + MIR SINE MIR 79 262 0 236 113 38 38 chr11 124386558 124386611 -26396942 + MLT1K LTR MaLR 517 569 -19 260 26 0 26 chr11 124386628 124386666 -26396887 + (ATG)n Simple_repeat Simple_repeat 3 39 0 246 128 0 0 chr11 124386793 124386832 -26396721 + (TG)n Simple_repeat Simple_repeat 1 39 0 1945 113 0 8 chr11 124386910 124387176 -26396377 + AluSq SINE Alu 1 264 -49 790 189 18 12 chr11 124388178 124388347 -26395206 - MER5B DNA MER1_type -4 174 5 723 253 34 11 chr11 124389536 124389714 -26393839 - MIR SINE MIR 0 262 81 2326 165 57 5 chr11 124389761 124390166 -26393387 - MSTB LTR MaLR 0 426 1 215 241 35 17 chr11 124391935 124391993 -26391560 + L3 LINE CR1 1511 1569 -8 367 286 31 0 chr11 124392074 124392172 -26391381 - MIR SINE MIR -59 203 103 251 350 58 0 chr11 124392192 124392295 -26391258 + MIR SINE MIR 9 117 -145 198 282 0 0 chr11 124392323 124392362 -26391191 + MIR SINE MIR 218 256 -6 225 327 40 20 chr11 124392388 124392489 -26391064 - MIR SINE MIR -156 106 4 531 325 68 17 chr11 124392521 124392758 -26390795 - MIR SINE MIR -12 250 2 2048 157 19 25 chr11 124394161 124394525 -26389028 + THE1B LTR MaLR 1 362 -2 2251 125 6 3 chr11 124394525 124394836 -26388717 + AluSx SINE Alu 1 312 0 259 381 27 7 chr11 124394937 124395084 -26388469 + MIR SINE MIR 100 249 -13 1084 123 7 0 chr11 124396528 124396682 -26386871 - AluSg/x SINE Alu -2 310 156 347 369 31 25 chr11 124397191 124397351 -26386202 + L2 LINE L2 3112 3272 0 365 312 0 29 chr11 124398452 124398622 -26384931 + CT-rich Low_complexity Low_complexity 4 168 0 2866 187 16 5 chr11 124399008 124399560 -26383993 + L1MB4 LINE L1 5620 6177 -3 2269 93 0 33 chr11 124399625 124399956 -26383597 + AluY SINE Alu 1 321 0 355 326 114 40 chr11 124399988 124400215 -26383338 - L1ME3A LINE L1 -1 6169 5926 430 332 134 0 chr11 124400344 124400531 -26383022 - MIR SINE MIR 0 262 51 634 298 115 54 chr11 124401283 124401951 -26381602 - L2 LINE L2 -8 3264 2548 322 225 194 6 chr11 124402654 124402814 -26380739 - LTR16A LTR ERVL -22 428 239 1285 357 61 15 chr11 124403111 124403154 -26380399 - ERVL LTR ERVL -202 5283 5243 2072 128 68 46 chr11 124403154 124403521 -26380032 + THE1C LTR MaLR 1 375 0 1285 357 61 15 chr11 124403521 124403744 -26379809 - ERVL LTR ERVL -242 5243 5032 1906 124 8 0 chr11 124403744 124404003 -26379550 - AluSg SINE Alu -1 309 49 1285 357 61 15 chr11 124404003 124404788 -26378765 - ERVL LTR ERVL -453 5032 4183 375 253 11 32 chr11 124404864 124404959 -26378594 - MIR SINE MIR -116 146 54 266 239 72 116 chr11 124405938 124406076 -26377477 - MIR SINE MIR -11 251 120 684 253 127 2 chr11 124406142 124406337 -26377216 - MIR SINE MIR -56 206 2 221 296 22 30 chr11 124407901 124408036 -26375517 + (CATA)n Simple_repeat Simple_repeat 3 136 0 242 338 0 0 chr11 124408075 124408155 -26375398 + L2 LINE L2 3234 3313 0 184 224 103 35 chr11 124408882 124408940 -26374613 - MIR SINE MIR -166 96 35 420 257 178 13 chr11 124409255 124409407 -26374146 + MER91A DNA MER1_type 17 193 -3 375 366 64 0 chr11 124409770 124409942 -26373611 + L3 LINE CR1 1260 1442 -135 2261 111 0 23 chr11 124410681 124410987 -26372566 + AluSc SINE Alu 1 299 -10 201 323 54 46 chr11 124411348 124411478 -26372075 + L3 LINE CR1 1441 1571 -6 279 57 472 0 chr11 124411698 124411751 -26371802 - MADE1 DNA Mariner -2 78 1 1663 179 3 30 chr11 124411765 124412066 -26371487 - AluJb SINE Alu -19 293 1 645 235 118 41 chr11 124412070 124412291 -26371262 - MIR SINE MIR -11 251 14 267 214 129 81 chr11 124414382 124414548 -26369005 + MIR3 SINE MIR 11 174 -59 509 301 47 19 chr11 124415590 124415803 -26367750 - MLT1K LTR MaLR -44 544 326 1935 188 25 3 chr11 124415920 124416277 -26367276 + MLT1A1 LTR MaLR 1 365 0 6884 119 63 25 chr11 124417471 124418655 -26364898 - Tigger3b DNA MER2_type 0 1231 2 308 274 14 0 chr11 124418677 124418750 -26364803 - MIR3 SINE MIR 0 208 135 2210 107 21 0 chr11 124418978 124419268 -26364285 - AluY SINE Alu -15 296 1 470 155 52 0 chr11 124419298 124419395 -26364158 - L1MC4 LINE L1 -13 8029 7928 194 161 0 18 chr11 124419438 124419494 -26364059 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 1555 179 68 8 chr11 124419513 124419866 -26363687 - L1MC4 LINE L1 -142 7900 7527 2234 110 0 0 chr11 124421032 124421353 -26362200 + AluY SINE Alu 1 321 0 249 343 22 22 chr11 124421591 124421725 -26361828 + L2 LINE L2 3180 3313 0 200 286 0 18 chr11 124422140 124422196 -26361357 + GA-rich Low_complexity Low_complexity 4 58 0 2116 131 7 0 chr11 124423082 124423379 -26360174 - AluSx SINE Alu -3 309 11 206 271 42 97 chr11 124423460 124423604 -26359949 + MIR SINE MIR 57 192 -70 233 254 30 15 chr11 124423932 124423999 -26359554 - MIR SINE MIR -62 146 79 815 188 12 0 chr11 124424782 124424942 -26358611 + MER58B DNA MER1_type 180 341 0 431 314 41 12 chr11 124424946 124425115 -26358438 - MIR SINE MIR -61 201 28 2160 128 0 22 chr11 124428211 124428530 -26355023 + AluSx SINE Alu 1 312 0 6794 161 21 20 chr11 124430455 124431832 -26351721 + L1MA8 LINE L1 3934 5312 -834 333 126 0 2 chr11 124431835 124432090 -26351463 + AluSq SINE Alu 4 308 0 5401 124 42 14 chr11 124432090 124433052 -26350501 + L1MA8 LINE L1 5300 6288 -3 685 307 33 12 chr11 124433098 124433339 -26350214 + L3 LINE CR1 1305 1550 -27 326 260 201 30 chr11 124433445 124433614 -26349939 - MIR SINE MIR -6 256 59 195 129 0 0 chr11 124436394 124436425 -26347128 + (GA)n Simple_repeat Simple_repeat 2 32 0 486 0 0 0 chr11 124438164 124438218 -26345335 + (TATG)n Simple_repeat Simple_repeat 3 56 0 1504 156 72 15 chr11 124438218 124438481 -26345072 - AluJb SINE Alu -34 278 1 350 247 48 86 chr11 124439073 124439259 -26344294 - MLT1J2 LTR MaLR 0 450 272 241 333 36 22 chr11 124439292 124439430 -26344123 - MLT1I LTR MaLR -200 209 70 271 153 0 85 chr11 124440413 124440472 -26343081 - MLT1K LTR MaLR -24 564 511 720 188 0 0 chr11 124440765 124440899 -26342654 + FLAM_A SINE Alu 4 137 0 269 349 47 19 chr11 124442968 124443074 -26340479 + L2 LINE L2 3162 3270 -2 226 277 15 0 chr11 124443149 124443214 -26340339 + MLT1I LTR MaLR 72 137 -272 326 250 31 55 chr11 124443311 124443439 -26340114 + MLT1J1 LTR MaLR 266 390 -56 1144 199 62 84 chr11 124443493 124443864 -26339689 - MLT1A2 LTR MaLR 0 374 12 227 356 26 61 chr11 124444525 124444640 -26338913 + MIR SINE MIR 23 133 -75 201 39 0 0 chr11 124446218 124446244 -26337309 + (TC)n Simple_repeat Simple_repeat 1 26 0 3806 102 2 39 chr11 124447279 124447865 -26335688 - MER34B LTR ERV1 0 565 2 1587 226 30 84 chr11 124448725 124448896 -26334657 + MER34 LTR ERV1 2 181 -361 4075 133 41 5 chr11 124448896 124449525 -26334028 + MER39B LTR ERV1 2 653 0 1587 226 30 84 chr11 124449525 124449925 -26333628 + MER34 LTR ERV1 181 542 0 319 274 49 20 chr11 124450401 124450503 -26333050 - MIR SINE MIR -59 149 45 730 288 121 67 chr11 124451753 124452308 -26331245 - MLT1K LTR MaLR -2 586 2 200 366 40 0 chr11 124452314 124452415 -26331138 - MIR SINE MIR -111 151 47 4123 169 86 9 chr11 124452440 124453207 -26330346 + LTR1B LTR ERV1 1 826 0 29 28 0 0 chr11 124453422 124453458 -26330095 + AT_rich Low_complexity Low_complexity 1 36 0 276 172 0 0 chr11 124453615 124453673 -26329880 + (TG)n Simple_repeat Simple_repeat 2 59 0 228 203 0 31 chr11 124453839 124453903 -26329650 - LTR67 LTR ERVL 0 557 496 365 346 46 0 chr11 124453988 124454118 -26329435 + MER91A DNA MER1_type 38 173 -23 1319 177 46 122 chr11 124456107 124456502 -26327051 + MLT1A1 LTR MaLR 1 365 0 459 351 118 28 chr11 124456724 124457419 -26326134 + L2 LINE L2 2283 3048 -224 779 285 69 16 chr11 124457826 124458072 -26325481 + MIR SINE MIR 3 261 -1 480 297 85 37 chr11 124458894 124459140 -26324413 - L2 LINE L2 -9 3263 3006 2478 68 0 23 chr11 124459703 124460011 -26323542 + AluY SINE Alu 1 301 -10 181 359 0 0 chr11 124460238 124460291 -26323262 - L2 LINE L2 -2910 404 352 454 295 96 13 chr11 124460907 124461063 -26322490 - MIR3 SINE MIR -17 191 23 755 235 95 33 chr11 124461221 124461242 -26322311 + MIR SINE MIR 5 23 -239 364 235 132 75 chr11 124461242 124461774 -26321779 + MER34B LTR ERV1 4 565 0 755 235 95 33 chr11 124461774 124461995 -26321558 + MIR SINE MIR 23 262 0 254 362 16 8 chr11 124461989 124462116 -26321437 + MER5A DNA MER1_type 37 164 -25 * 351 289 26 77 chr11 124462274 124462430 -26321123 + MER5A DNA MER1_type 42 189 0 241 402 52 0 chr11 124465880 124466054 -26317499 + MIR SINE MIR 78 260 -2 551 286 58 34 chr11 124467520 124467726 -26315827 + MIR SINE MIR 46 256 -6 1105 302 123 13 chr11 124467797 124468619 -26314934 - L2 LINE L2 0 3313 2246 4131 40 2 0 chr11 124468619 124469116 -26314437 - L1PA4 LINE L1 -3 6152 5655 1105 302 123 13 chr11 124469116 124469271 -26314282 - L2 LINE L2 -1067 2246 2109 261 276 0 58 chr11 124470129 124470216 -26313337 + L2 LINE L2 3191 3272 0 638 329 101 4 chr11 124470735 124470972 -26312581 - MIR SINE MIR 0 262 3 643 168 191 8 chr11 124471920 124472051 -26311502 - MER5A DNA MER1_type 0 189 35 974 250 135 52 chr11 124472075 124472554 -26310999 - MLT1L LTR MaLR -58 453 4 464 259 120 64 chr11 124473129 124473233 -26310320 + L2 LINE L2 2919 3016 -297 1312 162 44 13 chr11 124473233 124473461 -26310092 + MER46A DNA MER2_type 2 236 0 464 259 120 64 chr11 124473461 124473730 -26309823 + L2 LINE L2 3016 3313 0 1963 201 81 9 chr11 124473925 124474367 -26309186 + MLT2B2 LTR ERVL 3 476 -39 245 263 13 0 chr11 124474367 124474443 -26309110 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 266 151 0 19 chr11 124474445 124474458 -26309095 + MLT2B2 LTR ERVL 503 515 -39 940 87 11 38 chr11 124474458 124474641 -26308912 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 266 151 0 19 chr11 124474641 124474680 -26308873 + MLT2B2 LTR ERVL 515 554 0 369 43 0 0 chr11 124475358 124475405 -26308148 + (TG)n Simple_repeat Simple_repeat 2 48 0 203 88 29 0 chr11 124475516 124475550 -26308003 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 244 361 172 21 chr11 124475559 124475850 -26307703 - L2 LINE L2 -24 3248 2914 262 191 107 48 chr11 124476393 124476477 -26307076 - L1ME3A LINE L1 -5 6165 6077 1431 210 20 54 chr11 124476505 124476896 -26306657 + L1MB4 LINE L1 5694 6071 -109 951 273 73 16 chr11 124476899 124476933 -26306620 - L1ME LINE L1 -471 5682 5651 234 0 0 0 chr11 124476933 124476959 -26306594 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 951 273 73 16 chr11 124476959 124477309 -26306244 - L1ME LINE L1 -502 5651 5276 646 154 17 29 chr11 124477309 124477484 -26306069 + CT-rich Low_complexity Low_complexity 2 174 0 3822 263 82 25 chr11 124477642 124479599 -26303954 - L1ME LINE L1 -1076 5053 2977 738 270 43 34 chr11 124479951 124480184 -26303369 + MIR SINE MIR 2 236 -26 375 236 28 19 chr11 124480211 124480317 -26303236 - MIR SINE MIR -109 153 47 235 358 121 18 chr11 124480369 124480858 -26302695 - L2 LINE L2 -663 2651 2113 387 0 0 0 chr11 124481652 124481695 -26301858 + (CA)n Simple_repeat Simple_repeat 2 44 0 324 0 0 0 chr11 124481694 124481730 -26301823 + (TA)n Simple_repeat Simple_repeat 2 37 0 * 299 170 68 14 chr11 124481898 124481990 -26301563 + MLT1J2 LTR MaLR 324 395 -14 880 191 44 20 chr11 124482212 124482416 -26301137 + MER3 DNA MER1_type 1 209 0 253 279 0 0 chr11 124483609 124483670 -26299883 - MIR SINE MIR -60 148 88 397 298 8 8 chr11 124483850 124483981 -26299572 - MIR SINE MIR -78 184 54 372 326 166 30 chr11 124484510 124485462 -26298091 - L2 LINE L2 -347 2967 1887 234 207 138 35 chr11 124487717 124487804 -26295749 - L2 LINE L2 -48 3265 3170 348 322 90 34 chr11 124488125 124488358 -26295195 - L2 LINE L2 -101 3171 2926 203 318 62 70 chr11 124488664 124488793 -26294760 + L2 LINE L2 3144 3271 -1 276 77 0 0 chr11 124488853 124488892 -26294661 + (CAA)n Simple_repeat Simple_repeat 2 40 0 1088 219 9 5 chr11 124489306 124489516 -26294037 + MER58A DNA MER1_type 1 211 -13 229 299 37 15 chr11 124489749 124489883 -26293670 - L1ME LINE L1 -4630 1499 1363 289 246 16 63 chr11 124490039 124490165 -26293388 - L1ME LINE L1 -4862 1257 1138 725 206 59 18 chr11 124490712 124490882 -26292671 + MER5A DNA MER1_type 13 189 0 409 296 19 19 chr11 124491312 124491474 -26292079 + MIR SINE MIR 71 232 -30 198 191 0 0 chr11 124491835 124491882 -26291671 + (TAA)n Simple_repeat Simple_repeat 2 48 0 786 199 75 5 chr11 124491884 124492070 -26291483 - MIR SINE MIR -26 236 38 306 326 30 8 chr11 124493577 124493709 -26289844 - L2 LINE L2 -2 3270 3136 181 235 98 0 chr11 124493960 124494011 -26289542 - L2 LINE L2 -493 2821 2766 1566 203 0 31 chr11 124494900 124495221 -26288332 - AluJo SINE Alu -1 311 1 537 215 68 17 chr11 124495419 124495624 -26287929 + MIR SINE MIR 31 248 -14 745 276 63 58 chr11 124495982 124496381 -26287172 + MLT1J LTR MaLR 1 401 -110 1958 143 14 3 chr11 124496590 124496902 -26286651 - AluSx SINE Alu 0 312 1 288 301 13 26 chr11 124497315 124497468 -26286085 + MIR SINE MIR 47 197 -65 571 222 36 12 chr11 124497537 124497704 -26285849 + L1MA8 LINE L1 6121 6291 0 351 255 56 43 chr11 124497924 124498085 -26285468 - MLT1J LTR MaLR -19 492 330 277 189 95 40 chr11 124498340 124498414 -26285139 - MLT1L LTR MaLR -536 79 2 4829 196 60 14 chr11 124498507 124499360 -26284193 - L1MC3 LINE L1 0 7785 6874 486 79 0 0 chr11 124499360 124499436 -26284117 + (CA)n Simple_repeat Simple_repeat 2 77 0 4829 196 60 14 chr11 124499436 124499623 -26283930 - L1MC3 LINE L1 -911 6874 6697 361 301 26 26 chr11 124499929 124500042 -26283511 - MIR3 SINE MIR -95 113 1 479 301 197 11 chr11 124500896 124501358 -26282195 + L2 LINE L2 1768 2315 -999 501 287 29 34 chr11 124501540 124501780 -26281773 - MIR SINE MIR 0 262 25 2201 130 0 0 chr11 124502532 124502839 -26280714 - AluSc SINE Alu -2 307 1 220 333 48 8 chr11 124502931 124503057 -26280496 + MIR SINE MIR 95 225 -37 695 279 66 16 chr11 124505212 124505456 -26278097 + MIR SINE MIR 2 257 -5 321 26 0 0 chr11 124505752 124505790 -26277763 + (TG)n Simple_repeat Simple_repeat 2 39 0 1835 107 4 0 chr11 124506913 124507155 -26276398 + AluSx SINE Alu 56 298 -14 1749 205 82 18 chr11 124507395 124507834 -26275719 + MLT1C LTR MaLR 1 467 0 202 246 35 0 chr11 124508191 124508248 -26275305 - MIR SINE MIR -15 247 189 340 195 239 35 chr11 124510102 124510215 -26273338 - L2 LINE L2 0 3272 3137 1672 177 97 19 chr11 124510431 124510793 -26272760 - MLT1B LTR MaLR 0 390 1 242 311 79 83 chr11 124511358 124511802 -26271751 - L2 LINE L2 -20 3252 2811 197 349 148 20 chr11 124512096 124512440 -26271113 - L2 LINE L2 -653 2661 2274 365 355 75 45 chr11 124513981 124514249 -26269304 - L2 LINE L2 0 3272 2997 229 244 63 113 chr11 124514283 124514504 -26269049 + L2 LINE L2 3104 3313 0 206 259 0 19 chr11 124514519 124514573 -26268980 - L2 LINE L2 -323 2949 2897 433 275 131 0 chr11 124514952 124515112 -26268441 + MIR SINE MIR 81 261 -1 400 313 39 22 chr11 124515194 124515373 -26268180 - MIR SINE MIR -65 197 16 400 262 43 57 chr11 124515829 124515970 -26267583 + MLT1K LTR MaLR 1 139 -456 204 268 0 0 chr11 124515977 124516018 -26267535 - MIR SINE MIR -211 51 11 377 177 9 97 chr11 124516134 124516247 -26267306 + MER113 DNA MER1_type? 15 117 -404 545 275 6 34 chr11 124516851 124517029 -26266524 + MER5B DNA MER1_type 4 176 -2 189 132 0 0 chr11 124517470 124517508 -26266045 + (TA)n Simple_repeat Simple_repeat 2 39 0 205 333 0 0 chr11 124517521 124517596 -26265957 + (CATATA)n Simple_repeat Simple_repeat 1 75 0 395 202 52 3 chr11 124518654 124518768 -26264785 - MLT1L LTR MaLR -2 610 459 474 307 71 47 chr11 124519034 124519373 -26264180 + MLT1K LTR MaLR 142 488 -100 483 18 0 0 chr11 124520974 124521030 -26262523 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 736 328 73 42 chr11 124521080 124521292 -26262261 + L2 LINE L2 1983 2187 -1127 1870 168 0 7 chr11 124521292 124521589 -26261964 - AluJb SINE Alu -17 295 1 736 328 73 42 chr11 124521589 124522156 -26261397 + L2 LINE L2 2187 2786 -528 181 299 173 0 chr11 124522560 124522687 -26260866 + L2 LINE L2 3156 3304 -9 204 158 0 0 chr11 124523396 124523434 -26260119 + GA-rich Low_complexity Low_complexity 3 40 0 1179 107 17 141 chr11 124524727 124525018 -26258535 - L1MA10 LINE L1 0 6334 6080 3136 30 0 3 chr11 124525019 124525384 -26258169 - L1PA4 LINE L1 0 6155 5792 900 170 26 100 chr11 124525403 124525567 -26257986 + L1M3 LINE L1 5511 5655 -513 2236 90 24 0 chr11 124525567 124525857 -26257696 + AluSp SINE Alu 1 297 -16 900 170 26 100 chr11 124525857 124525921 -26257632 + L1M3 LINE L1 5655 5722 -446 2028 214 65 71 chr11 124526579 124527129 -26256424 + MLT1H LTR MaLR 3 549 0 204 188 25 100 chr11 124527655 124527735 -26255818 - L2 LINE L2 -22 3250 3177 246 250 48 36 chr11 124528992 124529076 -26254477 + MIR SINE MIR 38 122 -86 983 305 121 39 chr11 124529555 124530547 -26253006 - L2 LINE L2 -571 2743 1671 2229 124 0 58 chr11 124532034 124532182 -26251371 + MER47A DNA MER2_type 9 164 -2159 2270 103 0 0 chr11 124532182 124532474 -26251079 + AluSq SINE Alu 1 292 -21 2229 124 0 58 chr11 124532474 124532705 -26250848 + MER47A DNA MER2_type 164 366 0 205 341 136 0 chr11 124532840 124532972 -26250581 + MIR SINE MIR 21 170 -92 344 183 11 108 chr11 124533009 124533102 -26250451 - L2 LINE L2 -5 3308 3225 1918 155 0 31 chr11 124533106 124533428 -26250125 + AluJo SINE Alu 1 312 0 196 156 0 0 chr11 124533429 124533461 -26250092 + MIR SINE MIR 194 225 -37 281 304 25 107 chr11 124533965 124534053 -26249500 - L2 LINE L2 -36 3236 3142 1000 253 0 18 chr11 124534053 124534278 -26249275 - MER58A DNA MER1_type -3 221 1 281 304 25 107 chr11 124534278 124534364 -26249189 - L2 LINE L2 -130 3142 3085 1809 163 10 102 chr11 124534364 124534764 -26248789 + MLT1A1 LTR MaLR 1 363 -2 281 304 25 107 chr11 124534764 124534831 -26248722 - L2 LINE L2 -187 3085 3014 243 346 71 38 chr11 124534905 124535171 -26248382 - L2 LINE L2 -680 2634 2360 383 347 24 32 chr11 124535265 124535516 -26248037 + L2 LINE L2 2625 2873 -441 926 161 0 6 chr11 124537303 124537483 -26246070 + CT-rich Low_complexity Low_complexity 2 180 0 210 107 0 0 chr11 124537483 124537511 -26246042 + (TCC)n Simple_repeat Simple_repeat 3 30 0 341 233 0 14 chr11 124538174 124538247 -26245306 - L2 LINE L2 0 3313 3242 288 272 7 136 chr11 124541756 124541903 -26241650 - L2 LINE L2 -6 3266 3139 1826 133 100 58 chr11 124543514 124543874 -26239679 + THE1C LTR MaLR 1 375 0 725 207 132 16 chr11 124544183 124544503 -26239050 - MSTD LTR MaLR 0 396 1 253 324 117 27 chr11 124544910 124545021 -26238532 + MIR3 SINE MIR 4 124 -84 445 271 113 0 chr11 124545202 124545335 -26238218 - MER117 DNA MER1_type 0 197 50 648 130 73 141 chr11 124545348 124545540 -26238013 + MER53 DNA DNA 11 189 0 416 351 71 15 chr11 124545682 124545950 -26237603 - MLT1K LTR MaLR -114 474 192 266 73 24 0 chr11 124546288 124546329 -26237224 + (GA)n Simple_repeat Simple_repeat 2 43 0 307 237 32 32 chr11 124546534 124546627 -26236926 + MIR SINE MIR 5 97 -165 2086 246 42 37 chr11 124547528 124548118 -26235435 + MLT1E LTR MaLR 1 593 0 406 321 56 32 chr11 124548118 124548366 -26235187 - MIR SINE MIR -3 259 5 454 283 133 22 chr11 124549947 124550127 -26233426 - MIR SINE MIR -25 237 38 202 299 26 13 chr11 124550260 124550337 -26233216 + L2 LINE L2 3231 3308 -5 281 279 143 62 chr11 124550508 124550830 -26232723 - LTR16C LTR ERVL -51 440 93 857 199 104 10 chr11 124551856 124551895 -26231658 - MIR SINE MIR -33 229 195 2980 185 38 8 chr11 124551895 124552429 -26231124 - MER44D DNA MER2_type 0 605 1 857 199 104 10 chr11 124552429 124552590 -26230963 - MIR SINE MIR -67 195 10 1998 188 56 17 chr11 124552862 124553271 -26230282 - LTR3 LTR ERVK -3 429 5 7447 92 2 5 chr11 124553275 124554259 -26229294 - HERVK3 LTR ERVK 0 7243 6263 3623 118 9 0 chr11 124554259 124554791 -26228762 - HERVK3 LTR ERVK -1894 5349 4813 2366 62 3 30 chr11 124554812 124555116 -26228437 + AluY SINE Alu 1 296 -15 761 177 0 28 chr11 124555134 124555275 -26228278 - HERVK3 LTR ERVK -3571 3672 3536 * 17039 125 20 13 chr11 124555259 124557884 -26225669 - HERVK3 LTR ERVK -4567 2676 34 2092 179 67 12 chr11 124557902 124558305 -26225248 - LTR3 LTR ERVK -3 429 5 541 251 108 79 chr11 124558351 124558533 -26225020 + L2 LINE L2 2561 2755 -559 2223 113 3 3 chr11 124558533 124558835 -26224718 - AluSx SINE Alu -10 302 1 541 251 108 79 chr11 124558835 124558931 -26224622 + L2 LINE L2 2755 2847 -467 283 372 9 0 chr11 124559514 124559627 -26223926 - L1ME LINE L1 -513 5726 5613 571 307 75 26 chr11 124559636 124559903 -26223650 + L2 LINE L2 3034 3313 0 322 283 230 5 chr11 124560880 124561067 -26222486 - MIR SINE MIR -25 237 9 224 208 42 0 chr11 124561652 124561700 -26221853 - L2 LINE L2 -1 3312 3263 3144 222 73 20 chr11 124562658 124563641 -26219912 + L1ME2 LINE L1 5129 6164 0 1949 209 129 42 chr11 124563844 124564420 -26219133 - L1ME LINE L1 -648 5587 4929 2195 105 7 10 chr11 124564420 124564724 -26218829 + AluSp SINE Alu 1 303 -10 1949 209 129 42 chr11 124564724 124564888 -26218665 - L1ME LINE L1 -1306 4929 4781 6630 249 69 20 chr11 124564893 124565793 -26217760 - L1ME LINE L1 -4007 2389 1535 2054 118 5 99 chr11 124565793 124566165 -26217388 - MER44D DNA MER2_type 0 609 3 6630 249 69 20 chr11 124566165 124567502 -26216051 - L1ME LINE L1 -4861 1535 42 235 243 0 40 chr11 124567592 124567666 -26215887 + MIR SINE MIR 131 201 -61 2185 125 0 0 chr11 124567883 124568180 -26215373 + AluSx SINE Alu 1 297 -15 330 328 32 16 chr11 124569899 124570024 -26213529 + L2 LINE L2 3187 3313 0 497 340 93 7 chr11 124570026 124570317 -26213236 - L3 LINE CR1 -5 1572 1257 459 301 45 20 chr11 124570755 124570954 -26212599 - MIR SINE MIR -54 208 5 196 240 40 0 chr11 124571019 124571069 -26212484 + L2 LINE L2 3261 3312 -1 217 244 11 111 chr11 124571082 124571172 -26212381 + MIR3 SINE MIR 83 163 -45 334 294 93 93 chr11 124571298 124571631 -26211922 + L2 LINE L2 2933 3265 -7 279 278 42 0 chr11 124572108 124572180 -26211373 + L2 LINE L2 3191 3265 -7 1928 163 13 0 chr11 124572306 124572606 -26210947 + AluJb SINE Alu 1 304 -8 414 0 0 0 chr11 124573063 124573109 -26210444 + (TG)n Simple_repeat Simple_repeat 2 47 0 807 291 30 26 chr11 124573928 124574290 -26209263 + MLT1I LTR MaLR 1 394 -15 235 289 118 0 chr11 124574461 124574537 -26209016 + L2 LINE L2 3163 3247 -25 304 379 17 0 chr11 124574782 124574898 -26208655 + L3 LINE CR1 1006 1123 -454 2224 104 68 22 chr11 124575695 124576050 -26207503 - THE1C LTR MaLR -2 373 3 5881 113 27 7 chr11 124576052 124576902 -26206651 - THE1C-int LTR MaLR 0 1580 714 2645 89 82 99 chr11 124576894 124577431 -26206122 - THE1C-int LTR MaLR -1052 528 1 * 1988 132 70 17 chr11 124577431 124577787 -26205766 - THE1C LTR MaLR 0 375 1 413 269 134 23 chr11 124577853 124578024 -26205529 - L2 LINE L2 0 3313 3124 263 314 66 52 chr11 124578221 124578508 -26205045 - L2 LINE L2 -461 2853 2563 1496 307 153 8 chr11 124579800 124580552 -26203001 + L2 LINE L2 1883 2743 -571 2212 102 0 0 chr11 124580579 124580885 -26202668 - AluSx SINE Alu 0 306 1 387 0 0 0 chr11 124580916 124580959 -26202594 + (CA)n Simple_repeat Simple_repeat 2 44 0 586 308 142 20 chr11 124580960 124581472 -26202081 + L2 LINE L2 2719 3307 -6 433 399 19 5 chr11 124581474 124581687 -26201866 - MIR SINE MIR -33 229 14 3097 236 16 38 chr11 124582199 124583633 -26199920 + L1ME2 LINE L1 4590 5983 -181 * 3270 181 43 25 chr11 124583091 124583835 -26199718 + L1MB3 LINE L1 5427 6183 0 1978 199 4 6 chr11 124583852 124584340 -26199213 + L1 LINE L1 4213 4699 -1447 369 286 36 21 chr11 124584544 124584684 -26198869 + LTR16A LTR ERVL 260 401 -49 471 276 15 37 chr11 124584706 124584840 -26198713 - MER91B DNA MER1_type -41 149 19 584 243 29 14 chr11 124585173 124585366 -26198187 + L1ME LINE L1 5124 5322 -824 243 0 0 0 chr11 124585366 124585393 -26198160 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 584 243 29 14 chr11 124585393 124585409 -26198144 + L1ME LINE L1 5322 5336 -810 303 324 46 46 chr11 124585735 124585994 -26197559 + L2 LINE L2 1698 1956 -1358 271 276 39 77 chr11 124586131 124586287 -26197266 + L2 LINE L2 2291 2440 -874 798 245 50 25 chr11 124586356 124586597 -26196956 + L2 LINE L2 3066 3312 -1 183 181 64 128 chr11 124586957 124587051 -26196502 - L3 LINE CR1 -452 1125 1038 229 260 96 34 chr11 124587653 124587861 -26195692 + L1ME LINE L1 5676 5896 -225 2206 71 7 0 chr11 124588204 124588525 -26195028 + AluSg SINE Alu 1 323 0 2150 105 10 3 chr11 124590817 124591122 -26192431 - AluSx SINE Alu -5 307 1 1364 143 0 10 chr11 124591193 124591396 -26192157 - AluSp SINE Alu -5 308 108 879 98 0 8 chr11 124591544 124591676 -26191877 + MER1B DNA MER1_type 209 339 0 302 198 287 0 chr11 124592108 124592209 -26191344 + MIR SINE MIR 15 144 -118 2208 99 17 0 chr11 124592256 124592550 -26191003 + AluSp SINE Alu 1 299 -14 1918 130 22 4 chr11 124594948 124595225 -26188328 - AluSx SINE Alu -30 282 1 1428 181 10 26 chr11 124595273 124595576 -26187977 + AluSq SINE Alu 1 298 -15 1493 185 108 0 chr11 124595596 124595856 -26187697 + AluJo SINE Alu 1 288 -24 469 143 9 9 chr11 124596141 124596246 -26187307 + GA-rich Low_complexity Low_complexity 2 106 0 195 357 43 0 chr11 124597248 124597318 -26186235 + L2 LINE L2 3199 3271 -1 228 185 0 56 chr11 124599313 124599367 -26184186 + L2 LINE L2 3159 3209 -104 2156 83 4 4 chr11 124599367 124599644 -26183909 + AluSg SINE Alu 1 277 -33 762 263 82 4 chr11 124599756 124599988 -26183565 + MIR SINE MIR 13 262 0 2017 143 77 16 chr11 124600628 124601006 -26182547 - MER57A LTR ERV1 -2 401 1 1572 123 5 0 chr11 124601266 124601478 -26182075 + AluSx SINE Alu 1 213 -99 1501 155 159 0 chr11 124601905 124602157 -26181396 - AluSx SINE Alu -10 292 1 258 56 0 0 chr11 124602762 124602798 -26180755 + (T)n Simple_repeat Simple_repeat 1 36 0 498 345 0 12 chr11 124606047 124606212 -26177341 + MIR SINE MIR 13 175 -87 393 162 40 0 chr11 124606484 124606558 -26176995 - MER69 DNA AcHobo 0 2526 2450 451 217 0 28 chr11 124606562 124606668 -26176885 - MER69 DNA AcHobo -1085 141 39 483 298 99 0 chr11 124607163 124607284 -26176269 - L2 LINE L2 -6 3266 3134 200 303 203 53 chr11 124607507 124607887 -26175666 - L2 LINE L2 0 3272 2836 180 175 318 0 chr11 124607929 124607992 -26175561 - MIR SINE MIR -79 129 47 330 248 86 0 chr11 124608178 124608283 -26175270 + MIR SINE MIR 95 208 -54 21 0 0 0 chr11 124608819 124608840 -26174713 + AT_rich Low_complexity Low_complexity 1 21 0 326 359 3 29 chr11 124609137 124609275 -26174278 + MIR SINE MIR 20 154 -76 240 214 0 0 chr11 124609744 124609800 -26173753 + GA-rich Low_complexity Low_complexity 2 57 0 248 256 174 8 chr11 124609812 124609859 -26173694 - MER112 DNA MER1_type -119 141 103 339 44 0 0 chr11 124609859 124609904 -26173649 + (TC)n Simple_repeat Simple_repeat 2 46 0 248 256 174 8 chr11 124609904 124609977 -26173576 - MER112 DNA MER1_type -157 103 1 551 204 102 0 chr11 124610185 124610293 -26173260 - FLAM_A SINE Alu -11 122 4 564 253 156 5 chr11 124612149 124612335 -26171218 + MIR SINE MIR 25 238 -24 538 273 133 51 chr11 124612832 124613397 -26170156 - HAL1 LINE L1 -1476 1031 421 309 51 0 0 chr11 124613444 124613483 -26170070 + (TG)n Simple_repeat Simple_repeat 2 40 0 31 58 0 0 chr11 124614997 124615049 -26168504 + AT_rich Low_complexity Low_complexity 1 52 0 325 105 18 18 chr11 124615986 124616043 -26167510 + U7 snRNA snRNA 2 58 -5 23 0 0 0 chr11 124616070 124616093 -26167460 + AT_rich Low_complexity Low_complexity 1 23 0 1638 135 160 28 chr11 124618002 124618439 -26165114 - LTR54B LTR ERV1 -2 496 2 541 206 22 0 chr11 124618574 124618710 -26164843 + L1MB7 LINE L1 3893 4031 -2115 * 2431 143 50 18 chr11 124618696 124619192 -26164361 + L1MB7 LINE L1 5350 5861 -323 981 64 7 14 chr11 124619266 124619407 -26164146 - L1PB2 LINE L1 0 6151 6012 248 356 166 41 chr11 124621953 124622248 -26161305 + L3 LINE CR1 36 367 -1210 13882 194 41 32 chr11 124622423 124627403 -26156150 - L1MA9 LINE L1 -45 6155 1324 1932 169 3 0 chr11 124627403 124627698 -26155855 - AluSx SINE Alu -16 296 1 13882 194 41 32 chr11 124627698 124628402 -26155151 - L1MA9 LINE L1 -4876 1324 627 549 329 56 32 chr11 124628650 124629061 -26154492 - L1MA9 LINE L1 -5223 732 312 793 341 3 7 chr11 124629216 124629515 -26154038 - L1MA9 LINE L1 -5517 438 141 354 248 74 25 chr11 124629572 124629693 -26153860 - L1MA9 LINE L1 -5823 132 6 350 348 72 0 chr11 124629784 124629922 -26153631 + L3 LINE CR1 694 841 -736 361 349 6 24 chr11 124630176 124630342 -26153211 - MIR3 SINE MIR -24 184 22 29 0 0 0 chr11 124630612 124630641 -26152912 + AT_rich Low_complexity Low_complexity 1 29 0 252 263 0 0 chr11 124630947 124631023 -26152530 - HAL1 LINE L1 -115 2392 2317 2402 73 3 22 chr11 124631144 124631457 -26152096 - AluY SINE Alu -4 307 1 2193 158 71 17 chr11 124631747 124632153 -26151400 - MSTA LTR MaLR 0 428 1 319 278 6 62 chr11 124632157 124632333 -26151220 - HAL1b LINE L1 -437 911 746 302 234 0 0 chr11 124632376 124632453 -26151100 - HAL1 LINE L1 -359 2148 2072 779 260 93 78 chr11 124632601 124633193 -26150360 - HAL1 LINE L1 -617 1890 1290 197 320 167 0 chr11 124633684 124633762 -26149791 + L2 LINE L2 3208 3298 -15 618 163 30 15 chr11 124634928 124635063 -26148490 - L1MB1 LINE L1 -6 6162 6026 209 281 47 0 chr11 124636746 124636810 -26146743 - MIR SINE MIR -72 136 70 22 70 0 0 chr11 124638103 124638146 -26145407 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr11 124638213 124638235 -26145318 + AT_rich Low_complexity Low_complexity 1 22 0 525 320 24 19 chr11 124638811 124639017 -26144536 - L2 LINE L2 0 3313 3107 249 270 11 0 chr11 124639483 124639572 -26143981 + L1MC4 LINE L1 6614 6703 -1339 246 323 180 26 chr11 124640078 124640267 -26143286 - MIR SINE MIR -39 223 6 1069 276 52 29 chr11 124640388 124640769 -26142784 - MLT1K LTR MaLR -23 565 176 2386 76 0 0 chr11 124642865 124643154 -26140399 + AluSg1 SINE Alu 1 289 -20 1518 277 93 57 chr11 124643189 124644393 -26139160 - HAL1 LINE L1 -937 1570 324 935 185 0 19 chr11 124645844 124646006 -26137547 - AluJb SINE Alu -16 296 138 506 260 27 20 chr11 124646189 124646335 -26137218 + HsTC2 DNA Tc2 1 147 -1751 1105 251 83 16 chr11 124646341 124646764 -26136789 + HsTC2 DNA Tc2 1274 1900 0 288 0 0 0 chr11 124647959 124647991 -26135562 + (T)n Simple_repeat Simple_repeat 1 32 0 1379 138 22 4 chr11 124648224 124648449 -26135104 - AluJb SINE Alu 0 312 84 22 0 0 0 chr11 124649616 124649638 -26133915 + AT_rich Low_complexity Low_complexity 1 22 0 5819 14 0 0 chr11 124649873 124650530 -26133023 - L1PA2 LINE L1 -2 6153 5497 590 234 0 0 chr11 124650667 124650808 -26132745 + L1MC4 LINE L1 7532 7672 -370 580 85 0 21 chr11 124650828 124650922 -26132631 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 1786 161 20 0 chr11 124650922 124651226 -26132327 - AluSx SINE Alu -2 310 1 348 176 37 28 chr11 124651245 124651353 -26132200 + L1MC4 LINE L1 7696 7804 -238 1305 233 78 12 chr11 124651356 124651777 -26131776 - MLT1C LTR MaLR -12 455 7 646 239 32 32 chr11 124651783 124652030 -26131523 + L1MC4 LINE L1 7796 8042 0 2141 121 3 3 chr11 124652052 124652357 -26131196 + AluSx SINE Alu 1 305 -7 2140 134 16 0 chr11 124654361 124654667 -26128886 + AluSx SINE Alu 1 311 -1 379 362 18 17 chr11 124655062 124655279 -26128274 - MIR SINE MIR 0 262 44 255 61 0 0 chr11 124656543 124656576 -26126977 + (TG)n Simple_repeat Simple_repeat 2 34 0 513 138 0 73 chr11 124657077 124657186 -26126367 - L1MB2 LINE L1 -3 6168 6068 315 333 118 27 chr11 124658414 124658711 -26124842 + L2 LINE L2 2067 2390 -924 24 0 0 0 chr11 124659658 124659682 -26123871 + AT_rich Low_complexity Low_complexity 1 24 0 2060 108 0 4 chr11 124659683 124659960 -26123593 - AluSx SINE Alu -32 280 5 241 214 0 0 chr11 124660058 124660100 -26123453 - MIR SINE MIR -17 245 204 879 320 74 23 chr11 124661508 124661611 -26121942 - MLT1J LTR MaLR -1 510 414 231 88 0 0 chr11 124661611 124661645 -26121908 + (TAGG)n Simple_repeat Simple_repeat 2 35 0 879 320 74 23 chr11 124661645 124662026 -26121527 - MLT1J LTR MaLR -97 414 1 293 285 101 57 chr11 124664266 124664406 -26119147 - L2 LINE L2 -1 3312 3157 231 36 0 0 chr11 124664406 124664434 -26119119 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 293 285 101 57 chr11 124664434 124664521 -26119032 - L2 LINE L2 -156 3157 3075 623 129 0 0 chr11 124664547 124664640 -26118913 + AluSg/x SINE Alu 203 295 -15 483 18 0 0 chr11 124664687 124664743 -26118810 + (GA)n Simple_repeat Simple_repeat 1 56 0 373 300 65 6 chr11 124665690 124665862 -26117691 - MIR SINE MIR -54 154 4 2300 158 45 2 chr11 124666818 124667237 -26116316 + L1MA6 LINE L1 5859 6295 -5 251 195 78 13 chr11 124668109 124668186 -26115367 + HAL1 LINE L1 1682 1763 -744 397 322 82 6 chr11 124668992 124669163 -26114390 + MIR SINE MIR 79 262 0 2787 181 61 18 chr11 124669908 124670318 -26113235 + MER82 DNA MER2_type 23 469 -184 2256 104 19 0 chr11 124670318 124670625 -26112928 + AluSq SINE Alu 1 313 0 2787 181 61 18 chr11 124670625 124670818 -26112735 + MER82 DNA MER2_type 469 652 -1 1302 159 23 31 chr11 124670838 124671096 -26112457 - AluJo SINE Alu -3 309 54 237 185 0 74 chr11 124671268 124671322 -26112231 - MLT1J1 LTR MaLR -110 336 287 281 271 12 0 chr11 124671444 124671529 -26112024 - MLT1J2 LTR MaLR -346 104 19 183 222 0 0 chr11 124672192 124672237 -26111316 + (TAG)n Simple_repeat Simple_repeat 2 46 0 187 323 0 75 chr11 124672633 124672726 -26110827 - L2 LINE L2 -1 3271 3186 337 273 47 23 chr11 124676078 124676206 -26107347 - MIR SINE MIR -50 212 82 976 179 48 131 chr11 124678604 124678767 -26104786 - MER33 DNA MER1_type -2269 316 196 2241 86 3 3 chr11 124678767 124679057 -26104496 + AluSx SINE Alu 1 290 -22 976 179 48 131 chr11 124679057 124679245 -26104308 - MER33 DNA MER1_type -2389 196 1 879 184 189 0 chr11 124679312 124679497 -26104056 - MER58A DNA MER1_type -1 223 4 21 36 0 0 chr11 124679945 124679973 -26103580 + AT_rich Low_complexity Low_complexity 1 28 0 255 234 0 0 chr11 124681818 124681865 -26101688 + MIR SINE MIR 210 256 -6 2089 106 11 3 chr11 124682237 124682544 -26101009 - AluSq SINE Alu 0 309 1 191 246 0 49 chr11 124682766 124682827 -26100726 + L2 LINE L2 3212 3269 -3 201 74 0 0 chr11 124683263 124683290 -26100263 + (CA)n Simple_repeat Simple_repeat 2 28 0 2159 120 0 3 chr11 124683311 124683611 -26099942 + AluSx SINE Alu 1 299 -13 2490 62 0 3 chr11 124683654 124683962 -26099591 - AluY SINE Alu -4 307 1 501 344 16 16 chr11 124685103 124685292 -26098261 - MIR SINE MIR -69 193 5 252 264 18 0 chr11 124685518 124685681 -26097872 + (TAGA)n Simple_repeat Simple_repeat 3 168 0 446 144 24 40 chr11 124685695 124685820 -26097733 + GA-rich Low_complexity Low_complexity 4 126 0 246 224 0 0 chr11 124685821 124685870 -26097683 + (TAGA)n Simple_repeat Simple_repeat 3 51 0 27 62 0 0 chr11 124686222 124686270 -26097283 + AT_rich Low_complexity Low_complexity 1 48 0 2419 131 30 6 chr11 124686510 124686876 -26096677 - THE1C LTR MaLR 0 375 1 202 253 114 25 chr11 124686953 124687032 -26096521 + MIR SINE MIR 106 191 -71 343 306 52 29 chr11 124687570 124687743 -26095810 + MIR SINE MIR 6 182 -80 263 319 0 0 chr11 124687846 124687918 -26095635 - L2 LINE L2 -32 3240 3169 1038 136 0 34 chr11 124687996 124688172 -26095381 + L1MB5 LINE L1 6005 6174 0 984 138 0 0 chr11 124689374 124689533 -26094020 - L1 LINE L1 -1279 4867 4709 460 249 157 47 chr11 124689929 124690311 -26093242 - L1ME4a LINE L1 -139 5982 5559 1721 83 17 9 chr11 124691058 124691288 -26092265 - L1PA10 LINE L1 -9 6159 5928 3952 72 0 6 chr11 124691476 124691986 -26091567 - L1PA10 LINE L1 -219 5949 5443 184 214 24 0 chr11 124692569 124692611 -26090942 - MIR SINE MIR -74 134 92 1373 207 52 60 chr11 124693978 124694140 -26089413 + MLT1E LTR MaLR 14 176 -417 4145 130 51 10 chr11 124694140 124694343 -26089210 + L1MA4 LINE L1 5579 5772 -528 490 15 30 0 chr11 124694343 124694410 -26089143 + (TA)n Simple_repeat Simple_repeat 2 70 0 4145 130 51 10 chr11 124694410 124694889 -26088664 + L1MA4 LINE L1 5772 6289 -11 1373 207 52 60 chr11 124694889 124695257 -26088296 + MLT1E LTR MaLR 176 593 0 412 303 133 74 chr11 124695306 124696210 -26087343 - L2 LINE L2 -2 3270 2304 2126 130 0 3 chr11 124696371 124696672 -26086881 + AluSg SINE Alu 5 304 -6 252 253 67 120 chr11 124697402 124697552 -26086001 + MIR3 SINE MIR 1 142 -66 541 247 168 70 chr11 124697656 124698171 -26085382 - MLT1H1 LTR MaLR 0 555 1 33 25 0 0 chr11 124699057 124699097 -26084456 + AT_rich Low_complexity Low_complexity 1 40 0 1635 178 61 42 chr11 124699277 124699688 -26083865 - L1MA9 LINE L1 -158 6154 5743 1604 186 58 3 chr11 124700468 124700759 -26082794 - L1MB5 LINE L1 -8 6166 5860 594 324 62 43 chr11 124700774 124701054 -26082499 - L2 LINE L2 -33 3280 3007 1859 159 24 10 chr11 124701054 124701349 -26082204 + AluJo SINE Alu 1 299 -13 594 324 62 43 chr11 124701349 124701600 -26081953 - L2 LINE L2 -306 3007 2681 383 328 15 0 chr11 124702890 124703021 -26080532 - MIR SINE MIR -13 249 117 3019 154 106 73 chr11 124703212 124703688 -26079865 + L1MC3 LINE L1 6566 7025 -760 228 268 49 12 chr11 124703688 124703770 -26079783 + MLT1F1 LTR MaLR 24 108 -459 3019 154 106 73 chr11 124703770 124704351 -26079202 + L1MC3 LINE L1 7025 7777 -8 2446 68 0 13 chr11 124705083 124705390 -26078163 + AluY SINE Alu 1 303 -8 188 283 38 19 chr11 124705497 124705550 -26078003 + L2 LINE L2 3240 3293 -20 397 215 47 28 chr11 124706144 124706251 -26077302 + MER103 DNA DNA 8 116 -50 2545 62 0 3 chr11 124706271 124706575 -26076978 - AluY SINE Alu -8 303 1 419 312 7 7 chr11 124706703 124706844 -26076709 + MIR SINE MIR 117 257 -5 211 192 0 58 chr11 124707386 124707438 -26076115 - L2 LINE L2 0 3313 3265 182 240 60 50 chr11 124707811 124707911 -26075642 - L2 LINE L2 -589 2725 2625 1416 87 0 0 chr11 124709786 124709970 -26073583 - AluY SINE Alu -8 303 120 390 113 0 0 chr11 124710070 124710132 -26073421 + L1MC4a LINE L1 5926 5987 -1821 706 195 130 10 chr11 124710301 124710501 -26073052 + L1MC4a LINE L1 6285 6508 -1300 744 243 16 16 chr11 124710501 124710690 -26072863 + L1MC4a LINE L1 6731 6919 -889 1921 155 0 0 chr11 124710715 124711006 -26072547 - AluJo SINE Alu -21 291 1 916 150 94 0 chr11 124711007 124711167 -26072386 - LTR51 LTR ERV1 -84 587 413 1044 248 4 4 chr11 124711269 124711507 -26072046 + MER58B DNA MER1_type 103 340 -1 200 229 229 0 chr11 124713372 124713455 -26070098 + MIR SINE MIR 97 198 -64 21 0 0 0 chr11 124713904 124713925 -26069628 + AT_rich Low_complexity Low_complexity 1 21 0 2375 195 179 60 chr11 124714293 124715031 -26068522 + LTR1B LTR ERV1 1 826 0 2103 141 0 0 chr11 124715212 124715502 -26068051 + AluSx SINE Alu 1 290 -22 2218 152 66 13 chr11 124716185 124716579 -26066974 - L1MB3 LINE L1 0 6183 5769 888 153 14 96 chr11 124717838 124717982 -26065571 + MER3 DNA MER1_type 1 124 -85 2191 117 0 0 chr11 124717982 124718281 -26065272 - AluSx SINE Alu -13 299 1 888 153 14 96 chr11 124718281 124718345 -26065208 + MER3 DNA MER1_type 124 192 -17 1854 140 3 14 chr11 124718434 124718719 -26064834 - AluJb SINE Alu -30 282 1 268 267 34 82 chr11 124719071 124719217 -26064336 + MIR SINE MIR 73 211 -51 407 304 148 0 chr11 124720397 124720532 -26063021 - L2 LINE L2 -2 3270 3116 2304 101 0 3 chr11 124721038 124721336 -26062217 - AluSx SINE Alu -15 297 1 1351 210 85 65 chr11 124721373 124721821 -26061732 - MLT1C LTR MaLR -3 464 8 351 298 50 8 chr11 124722592 124722726 -26060827 - MIR SINE MIR -45 163 22 183 80 0 0 chr11 124723806 124723831 -26059722 + (T)n Simple_repeat Simple_repeat 1 25 0 2086 124 30 0 chr11 124724879 124725178 -26058375 - AluSq SINE Alu 0 313 6 309 289 119 6 chr11 124726517 124726676 -26056877 - MIR SINE MIR -11 251 75 323 323 11 0 chr11 124727049 124727142 -26056411 - MER5A DNA MER1_type -87 102 9 606 243 88 0 chr11 124727496 124727644 -26055909 - MER96 DNA MER1_type? 0 175 15 378 253 63 0 chr11 124727664 124727759 -26055794 - MIR3 SINE MIR -19 189 89 600 194 32 86 chr11 124727774 124727960 -26055593 + MER104 DNA Tc2 2 177 -3 572 259 174 5 chr11 124728068 124728280 -26055273 + MIR SINE MIR 1 248 -14 187 275 80 94 chr11 124729027 124729165 -26054388 + L2 LINE L2 3159 3294 -19 2190 80 25 0 chr11 124732382 124732682 -26050871 + AluSg SINE Alu 1 307 0 747 198 24 0 chr11 124732818 124732944 -26050609 - FLAM_A SINE Alu -4 129 1 537 252 39 91 chr11 124734168 124734422 -26049131 - L2 LINE L2 0 3313 3073 268 246 14 63 chr11 124734510 124734652 -26048901 - MIR SINE MIR -66 142 15 573 276 104 0 chr11 124735493 124735685 -26047868 - MIR SINE MIR 0 262 51 667 242 48 30 chr11 124735744 124735909 -26047644 - MIR SINE MIR -51 211 44 186 133 0 0 chr11 124738662 124738692 -26044861 + (TG)n Simple_repeat Simple_repeat 1 30 0 481 247 108 24 chr11 124739010 124739176 -26044377 - MIR SINE MIR -71 191 12 * 578 352 24 14 chr11 124739129 124739342 -26044211 + MIR SINE MIR 31 245 -17 21 0 0 0 chr11 124739343 124739364 -26044189 + AT_rich Low_complexity Low_complexity 1 21 0 239 324 158 0 chr11 124739576 124739715 -26043838 - L2 LINE L2 -744 2570 2410 242 264 77 11 chr11 124739903 124739994 -26043559 + MIR3 SINE MIR 89 185 -23 212 327 145 33 chr11 124740329 124740543 -26043010 - MIR SINE MIR -5 257 20 200 238 0 0 chr11 124740627 124740669 -26042884 - L2 LINE L2 -8 3305 3264 473 284 64 77 chr11 124741462 124741578 -26041975 - L2 LINE L2 -35 3278 3162 1401 185 143 26 chr11 124741578 124741886 -26041667 + MER2 DNA MER2_type 1 344 0 473 284 64 77 chr11 124741886 124742291 -26041262 - L2 LINE L2 -151 3162 2190 825 267 29 9 chr11 124742368 124742578 -26040975 - MIR SINE MIR -39 223 10 2196 118 3 0 chr11 124743031 124743335 -26040218 - AluSg SINE Alu -5 305 1 2405 195 179 58 chr11 124743516 124744253 -26039300 - LTR1B LTR ERV1 0 826 1 21 0 0 0 chr11 124744621 124744642 -26038911 + AT_rich Low_complexity Low_complexity 1 21 0 200 229 229 0 chr11 124745091 124745174 -26038379 - MIR SINE MIR -64 198 97 1210 236 9 37 chr11 124747035 124747357 -26036196 - MER58B DNA MER1_type -1 340 28 204 223 10 0 chr11 124747538 124747599 -26035954 + G-rich Low_complexity Low_complexity 2 104 0 2416 160 59 20 chr11 124748785 124749278 -26034275 + L1MB7 LINE L1 5665 6176 -8 24 53 0 0 chr11 124749378 124749416 -26034137 + AT_rich Low_complexity Low_complexity 1 38 0 467 294 109 27 chr11 124750518 124750739 -26032814 + MIR SINE MIR 14 252 -10 2118 137 48 34 chr11 124750794 124751152 -26032401 - THE1B LTR MaLR -1 363 1 195 253 227 0 chr11 124751547 124751622 -26031931 + MIR SINE MIR 117 208 -54 1769 83 186 0 chr11 124752124 124752376 -26031177 - AluSg SINE Alu 0 300 2 2236 103 3 7 chr11 124752416 124752717 -26030836 + AluSx SINE Alu 1 300 -12 190 284 32 103 chr11 124753075 124753230 -26030323 - L2 LINE L2 -262 3051 2908 315 71 0 0 chr11 124753289 124753331 -26030222 + (CATA)n Simple_repeat Simple_repeat 3 44 0 466 300 31 0 chr11 124754324 124754454 -26029099 - MIR SINE MIR -70 192 59 236 202 29 67 chr11 124754639 124754743 -26028810 - L1ME4a LINE L1 0 6121 6022 * 1158 231 49 12 chr11 124754696 124755030 -26028523 + L1ME1 LINE L1 5822 6161 -5 2171 110 0 13 chr11 124756361 124756662 -26026891 + AluSx SINE Alu 1 297 -15 485 114 0 0 chr11 124759361 124759431 -26024122 - L1MB2 LINE L1 -2 6169 6100 204 380 71 9 chr11 124759648 124759761 -26023792 + L2 LINE L2 3142 3261 -11 218 384 0 16 chr11 124762548 124762673 -26020880 + GA-rich Low_complexity Low_complexity 4 126 0 565 172 41 69 chr11 124764147 124764362 -26019191 - MER39 LTR ERV1 -8 729 550 1794 137 66 1 chr11 124764376 124764729 -26018824 - LTR48B LTR ERV1 -250 394 1 2106 135 7 0 chr11 124764738 124765034 -26018519 - AluSx SINE Alu -14 298 1 189 0 0 0 chr11 124765051 124765072 -26018481 + (A)n Simple_repeat Simple_repeat 1 21 0 310 261 92 50 chr11 124765846 124765965 -26017588 + L2 LINE L2 3182 3305 -8 2243 112 3 3 chr11 124766016 124766320 -26017233 + AluSp SINE Alu 2 305 -8 2749 120 24 28 chr11 124766420 124766880 -26016673 + L1MA4A LINE L1 5845 6302 -1 1937 162 3 3 chr11 124769387 124769684 -26013869 + AluSx SINE Alu 1 297 -15 22 56 0 0 chr11 124769722 124769758 -26013795 + AT_rich Low_complexity Low_complexity 1 36 0 340 251 257 12 chr11 124769763 124769934 -26013619 - MIR SINE MIR -3 259 47 403 252 141 37 chr11 124770636 124770771 -26012782 + MER5A DNA MER1_type 13 161 -28 356 265 68 8 chr11 124771742 124771859 -26011694 + MIR SINE MIR 25 148 -60 396 59 0 0 chr11 124772420 124772471 -26011082 + (TG)n Simple_repeat Simple_repeat 1 51 0 575 279 87 44 chr11 124773803 124774032 -26009521 - L2 LINE L2 -1 3312 3074 328 261 99 21 chr11 124775081 124775223 -26008330 - MLT1J1 LTR MaLR -29 417 265 * 754 268 46 4 chr11 124775217 124775456 -26008097 - MLT1J2 LTR MaLR -201 249 1 423 0 0 0 chr11 124776118 124776165 -26007388 + (TG)n Simple_repeat Simple_repeat 2 48 0 2341 194 30 7 chr11 124777497 124777962 -26005591 - L1MB2 LINE L1 -11 6160 5685 763 171 0 0 chr11 124779551 124779668 -26003885 + FLAM_A SINE Alu 2 118 -15 217 330 28 9 chr11 124780489 124780598 -26002955 - L2 LINE L2 -2901 413 303 326 289 44 9 chr11 124782350 124782464 -26001089 - L3 LINE CR1 -2 1575 1458 195 303 25 67 chr11 124783550 124783669 -25999884 - L2 LINE L2 -13 3300 3187 221 289 53 13 chr11 124783751 124783827 -25999726 - L3 LINE CR1 -4 1573 1495 904 297 90 19 chr11 124783841 124784218 -25999335 - L3 LINE CR1 -431 1146 743 239 274 9 44 chr11 124784222 124784335 -25999218 - Charlie7 DNA MER1_type -6 2606 2498 * 1692 282 54 33 chr11 124784320 124784863 -25998690 - Charlie7 DNA MER1_type -1926 686 125 2138 97 0 60 chr11 124784863 124785182 -25998371 + AluSc SINE Alu 1 300 -9 1692 282 54 33 chr11 124785182 124785309 -25998244 - Charlie7 DNA MER1_type -2487 125 2 650 299 54 22 chr11 124785318 124785596 -25997957 - L3 LINE CR1 -848 729 443 349 303 133 33 chr11 124785612 124785823 -25997730 - MIR SINE MIR -5 257 26 386 235 135 92 chr11 124786358 124786758 -25996795 - L1MC4 LINE L1 0 8042 7626 357 252 36 65 chr11 124787591 124787730 -25995823 + MIR3 SINE MIR 68 202 -6 281 337 58 6 chr11 124788210 124788382 -25995171 + MIR SINE MIR 81 261 -1 258 105 0 0 chr11 124791874 124791912 -25991641 + (T)n Simple_repeat Simple_repeat 1 38 0 27 0 0 0 chr11 124793619 124793646 -25989907 + AT_rich Low_complexity Low_complexity 1 27 0 255 308 55 41 chr11 124794004 124794150 -25989403 - L2 LINE L2 -1 3312 3165 2251 106 0 0 chr11 124796561 124796854 -25986699 - AluSg SINE Alu -16 294 2 258 56 0 0 chr11 124796955 124796991 -25986562 + (GA)n Simple_repeat Simple_repeat 2 37 0 387 227 15 29 chr11 124797314 124797435 -25986118 + MIR SINE MIR 48 171 -37 340 200 133 0 chr11 124797457 124797547 -25986006 - L2 LINE L2 -2 3311 3210 312 360 38 15 chr11 124797684 124797945 -25985608 - L2 LINE L2 -1438 1876 1610 2238 112 30 0 chr11 124798750 124799053 -25984500 + AluSx SINE Alu 1 312 0 192 228 0 0 chr11 124799336 124799393 -25984160 + CT-rich Low_complexity Low_complexity 4 60 0 480 231 107 16 chr11 124800486 124800607 -25982946 - MER94 DNA DNA -2 132 1 261 0 0 0 chr11 124800651 124800680 -25982873 + (CA)n Simple_repeat Simple_repeat 2 30 0 3644 193 168 9 chr11 124801070 124802029 -25981524 - Charlie1 DNA MER1_type -15 2746 1636 1680 32 0 0 chr11 124803220 124803408 -25980145 - L1PA4 LINE L1 0 6155 5968 344 277 145 31 chr11 124806429 124806588 -25976965 + MER5B DNA MER1_type 2 178 0 3394 214 63 30 chr11 124807799 124808576 -25974977 - MER21B LTR ERV1 -60 803 1 2362 48 0 61 chr11 124809332 124809643 -25973910 - AluY SINE Alu -17 294 3 401 147 0 15 chr11 124809956 124810024 -25973529 + MIR SINE MIR 78 144 -118 31 0 0 0 chr11 124811040 124811071 -25972482 + AT_rich Low_complexity Low_complexity 1 31 0 184 0 30 61 chr11 124811789 124811822 -25971731 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 408 20 0 0 chr11 124812551 124812600 -25970953 + (TG)n Simple_repeat Simple_repeat 2 50 0 1939 107 4 0 chr11 124813144 124813407 -25970146 - AluSx SINE Alu -14 298 35 614 249 43 38 chr11 124814592 124814777 -25968776 - MIR SINE MIR -29 233 48 2065 113 0 7 chr11 124814867 124815187 -25968366 + AluSx SINE Alu 3 320 0 1783 196 138 31 chr11 124815284 124815703 -25967850 + MLT1C LTR MaLR 4 467 0 324 0 0 0 chr11 124817107 124817143 -25966410 + (TA)n Simple_repeat Simple_repeat 2 37 0 205 261 118 65 chr11 124817166 124817314 -25966239 + MIR SINE MIR 20 169 -62 426 146 122 0 chr11 124819450 124819532 -25964021 + L1MA4 LINE L1 6200 6291 -9 222 37 0 0 chr11 124820947 124820974 -25962579 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2070 95 7 4 chr11 124820974 124821248 -25962305 - AluSx SINE Alu -36 276 2 840 253 64 25 chr11 124822491 124822693 -25960860 - MER63A DNA MER1_type 0 210 1 200 243 27 68 chr11 124823460 124823534 -25960019 - MIR SINE MIR -56 152 82 442 231 100 31 chr11 124824235 124824365 -25959188 + MIR SINE MIR 6 144 -118 1982 106 11 7 chr11 124824939 124825213 -25958340 + L1PA11 LINE L1 5899 6173 -1 185 388 29 0 chr11 124826016 124826119 -25957434 - MIR SINE MIR -33 229 124 417 335 21 63 chr11 124826544 124826735 -25956818 - MIR3 SINE MIR -23 185 3 340 102 0 0 chr11 124828466 124828515 -25955038 - MLT2B1 LTR ERVL 0 520 472 212 185 19 0 chr11 124828541 124828595 -25954958 + (TA)n Simple_repeat Simple_repeat 2 56 0 315 0 0 0 chr11 124828595 124828630 -25954923 + (GA)n Simple_repeat Simple_repeat 2 36 0 1826 219 84 26 chr11 124828630 124829060 -25954493 - MLT2B1 LTR ERVL -65 455 1 346 276 16 113 chr11 124829326 124829511 -25954042 - MER5A DNA MER1_type -21 168 2 221 226 113 16 chr11 124829563 124829625 -25953928 - L2 LINE L2 -9 3304 3237 2017 141 72 16 chr11 124829650 124829969 -25953584 + MER1B DNA MER1_type 1 337 0 375 41 0 0 chr11 124831057 124831106 -25952447 + (TG)n Simple_repeat Simple_repeat 2 50 0 303 136 0 0 chr11 124832328 124832387 -25951166 + (TG)n Simple_repeat Simple_repeat 1 59 0 2369 114 0 0 chr11 124832685 124832993 -25950560 + AluSg SINE Alu 1 308 -2 806 224 6 6 chr11 124835009 124835183 -25948370 + MIR SINE MIR 18 191 -71 259 273 71 0 chr11 124835209 124835308 -25948245 - L1MC4 LINE L1 -1323 6719 6614 * 283 273 23 0 chr11 124835222 124835310 -25948243 + L1MC4 LINE L1 6614 6703 -1339 269 203 72 14 chr11 124836307 124836376 -25947177 + MIR3 SINE MIR 124 196 -12 1698 140 45 39 chr11 124836876 124837234 -25946319 + AluSq SINE Alu 3 362 0 245 155 17 0 chr11 124838942 124839000 -25944553 + (CA)n Simple_repeat Simple_repeat 1 59 0 2553 61 0 13 chr11 124839011 124839321 -25944232 - AluY SINE Alu -5 306 1 252 0 0 0 chr11 124839426 124839454 -25944099 + (TG)n Simple_repeat Simple_repeat 2 29 0 333 328 69 26 chr11 124839515 124839704 -25943849 - MIR SINE MIR -52 210 14 212 186 93 0 chr11 124839757 124839800 -25943753 - MIR SINE MIR -67 141 95 809 206 140 13 chr11 124840046 124840274 -25943279 - MIR SINE MIR 0 262 6 2367 132 8 16 chr11 124840381 124840759 -25942794 - THE1C LTR MaLR 0 375 1 1995 82 112 4 chr11 124841889 124842156 -25941397 - AluSg SINE Alu -14 296 1 375 361 39 0 chr11 124842290 124842420 -25941133 + MIR SINE MIR 20 154 -108 1621 51 0 0 chr11 124843116 124843312 -25940241 + L1PA3 LINE L1 5960 6155 0 180 0 0 0 chr11 124843345 124843365 -25940188 + (A)n Simple_repeat Simple_repeat 1 20 0 460 240 138 6 chr11 124844028 124844197 -25939356 + MIR3 SINE MIR 2 189 -19 275 24 71 0 chr11 124845847 124845889 -25937664 + T-rich Low_complexity Low_complexity 2 46 0 186 277 0 0 chr11 124847475 124847522 -25936031 + L2 LINE L2 3255 3301 -12 23 0 0 0 chr11 124849854 124849877 -25933676 + AT_rich Low_complexity Low_complexity 1 23 0 1044 308 38 44 chr11 124851557 124852388 -25931165 + L2 LINE L2 2476 3292 -21 205 240 160 0 chr11 124853406 124853481 -25930072 - L2 LINE L2 -268 3004 2918 278 246 0 0 chr11 124853496 124853561 -25929992 + L2 LINE L2 3194 3258 -55 562 244 19 12 chr11 124853720 124853880 -25929673 - MIR SINE MIR 0 262 102 435 19 0 0 chr11 124854286 124854338 -25929215 + (CA)n Simple_repeat Simple_repeat 1 52 0 479 167 105 35 chr11 124855589 124855703 -25927850 - MER94 DNA DNA 0 134 13 21 0 0 0 chr11 124856157 124856178 -25927375 + AT_rich Low_complexity Low_complexity 1 21 0 219 183 14 42 chr11 124856207 124856278 -25927275 + T-rich Low_complexity Low_complexity 2 70 0 204 369 28 43 chr11 124857037 124857292 -25926261 + L2 LINE L2 2397 2647 -667 2625 16 7 13 chr11 124859662 124859967 -25923586 - AluY SINE Alu -8 303 1 184 270 126 27 chr11 124860635 124860746 -25922807 - L3 LINE CR1 -1 1576 1455 1003 286 101 9 chr11 124860888 124861314 -25922239 - L3 LINE CR1 -340 1237 773 367 264 64 24 chr11 124861322 124861447 -25922106 - MER20B DNA MER1_type -592 191 62 397 220 119 34 chr11 124861670 124861788 -25921765 - L3 LINE CR1 -837 740 613 2488 65 3 10 chr11 124864118 124864424 -25919129 - AluY SINE Alu -7 304 1 43984 49 2 1 chr11 124867463 124873610 -25909943 + L1PA5 LINE L1 2 6153 -1 180 0 0 0 chr11 124874794 124874814 -25908739 + (CTG)n Simple_repeat Simple_repeat 3 22 0 2915 117 57 15 chr11 124877808 124878286 -25905267 - L1MB3 LINE L1 -9 6174 5677 899 185 46 31 chr11 124878314 124878509 -25905044 - L1M3 LINE L1 -436 5747 5550 334 276 23 0 chr11 124881389 124881476 -25902077 + L1MC4 LINE L1 6614 6702 -1340 35 54 0 0 chr11 124881527 124881583 -25901970 + AT_rich Low_complexity Low_complexity 1 56 0 1092 8 0 0 chr11 124883015 124883135 -25900418 - AluYa5/8 SINE Alu -5 306 187 228 272 33 65 chr11 124884895 124884987 -25898566 + MIR SINE MIR 77 165 -97 488 298 42 47 chr11 124885510 124885725 -25897828 + MIR SINE MIR 22 235 -27 1928 154 35 0 chr11 124885854 124886140 -25897413 + AluSx SINE Alu 1 296 -16 375 23 0 0 chr11 124888160 124888204 -25895349 + (TG)n Simple_repeat Simple_repeat 1 44 0 1637 166 58 4 chr11 124888689 124888967 -25894586 + AluJb SINE Alu 1 293 -19 2223 111 7 10 chr11 124894310 124894617 -25888936 - AluSx SINE Alu -6 306 1 1975 157 27 0 chr11 124895648 124895941 -25887612 + AluJo SINE Alu 1 301 -11 345 313 0 0 chr11 124896034 124896117 -25887436 + L2 LINE L2 3186 3268 -4 1804 165 0 48 chr11 124896152 124896467 -25887086 - AluSx SINE Alu -12 300 1 23 0 0 0 chr11 124896467 124896490 -25887063 + AT_rich Low_complexity Low_complexity 1 23 0 258 295 0 0 chr11 124896980 124897041 -25886512 - MIR3 SINE MIR -22 186 126 711 184 0 0 chr11 124897370 124897484 -25886069 + MER81 DNA DNA 1 114 0 188 130 43 65 chr11 124897938 124897984 -25885569 - MER5A DNA MER1_type -6 183 139 180 0 0 0 chr11 124899114 124899134 -25884419 + (A)n Simple_repeat Simple_repeat 1 20 0 477 268 119 10 chr11 124899876 124900070 -25883483 - MIR SINE MIR -27 235 21 598 298 112 5 chr11 124900788 124901019 -25882534 + MIR SINE MIR 9 261 -1 26 50 0 0 chr11 124901226 124901266 -25882287 + AT_rich Low_complexity Low_complexity 1 40 0 1272 215 23 7 chr11 124902004 124902306 -25881247 + L1MA4 LINE L1 5988 6294 -6 407 299 87 33 chr11 124902372 124902556 -25880997 + MIR SINE MIR 55 248 -14 2845 13 0 0 chr11 124902561 124902867 -25880686 - AluYa5 SINE Alu -5 306 1 2331 97 0 3 chr11 124903217 124903517 -25880036 - AluSx SINE Alu -9 303 5 220 355 0 0 chr11 124906176 124906252 -25877301 + CT-rich Low_complexity Low_complexity 5 80 0 357 281 34 35 chr11 124910076 124910223 -25873330 - MER5A DNA MER1_type -18 171 8 825 286 156 32 chr11 124910398 124910744 -25872809 - L3 LINE CR1 -2 1575 1187 722 294 160 18 chr11 124910729 124911225 -25872328 - L2 LINE L2 0 3313 2745 * 284 246 0 0 chr11 124914093 124914150 -25869403 + MER5A DNA MER1_type 54 110 -79 486 222 24 48 chr11 124914285 124914411 -25869142 - L2 LINE L2 0 3313 3191 2408 96 0 0 chr11 124914614 124914916 -25868637 + AluSx SINE Alu 11 312 0 594 257 67 17 chr11 124914970 124915149 -25868404 - MIR SINE MIR -18 244 57 210 172 0 69 chr11 124915432 124915490 -25868063 + C-rich Low_complexity Low_complexity 2 55 0 508 239 123 0 chr11 124918513 124918668 -25864885 + MER5B DNA MER1_type 1 174 -4 318 115 0 0 chr11 124918975 124919027 -25864526 + (CA)n Simple_repeat Simple_repeat 1 52 0 196 26 26 53 chr11 124919568 124919606 -25863947 + (TTTC)n Simple_repeat Simple_repeat 4 40 0 219 36 0 0 chr11 124920610 124920638 -25862915 + (ATG)n Simple_repeat Simple_repeat 1 28 0 243 0 0 0 chr11 124921366 124921393 -25862160 + (A)n Simple_repeat Simple_repeat 1 27 0 339 359 48 28 chr11 124922150 124922374 -25861179 + MIR SINE MIR 19 245 -17 515 245 82 27 chr11 124922729 124922876 -25860677 - MER96 DNA MER1_type? -1 174 20 308 185 192 77 chr11 124923069 124923199 -25860354 - L2 LINE L2 -4 3309 3165 752 295 121 21 chr11 124923217 124923481 -25860072 + MLT1I LTR MaLR 33 340 -69 3488 183 50 76 chr11 124923481 124924436 -25859117 + MER63C DNA MER1_type 1 930 0 752 295 121 21 chr11 124924436 124924510 -25859043 + MLT1I LTR MaLR 340 405 -4 2276 267 71 37 chr11 124924511 124925480 -25858073 - L2 LINE L2 -167 3146 2128 198 373 37 45 chr11 124926003 124926309 -25857244 + L2 LINE L2 2660 2959 -313 1346 340 104 30 chr11 124927026 124928268 -25855285 + L2 LINE L2 230 1563 -1751 627 246 213 44 chr11 124928298 124928570 -25854983 - L2 LINE L2 -2 3311 2994 192 369 4 95 chr11 124928791 124929043 -25854510 + L2 LINE L2 2826 3054 -218 407 328 8 0 chr11 124929334 124929468 -25854085 + L2 LINE L2 3136 3270 -2 187 312 119 0 chr11 124930417 124930526 -25853027 - MER5A DNA MER1_type -26 163 42 216 221 15 88 chr11 124930697 124930765 -25852788 + L3 LINE CR1 399 461 -1116 357 277 55 88 chr11 124930781 124931055 -25852498 + L3 LINE CR1 727 991 -586 838 223 33 0 chr11 124931091 124931275 -25852278 - MIR SINE MIR -28 234 45 383 312 36 94 chr11 124931400 124931708 -25851845 + L3 LINE CR1 1121 1410 -167 460 259 28 28 chr11 124932152 124932260 -25851293 - L2 LINE L2 -15 3257 3150 384 307 15 15 chr11 124932258 124932395 -25851158 + MIR SINE MIR 8 144 -118 * 578 314 63 63 chr11 124932465 124933019 -25850534 - LTR67 LTR ERVL -2 555 2 211 224 197 0 chr11 124933541 124933617 -25849936 - MIR SINE MIR -6 256 166 629 227 227 28 chr11 124933703 124933985 -25849568 + MLT1K LTR MaLR 249 586 -2 230 294 73 55 chr11 124934086 124934117 -25849436 - L2 LINE L2 -19 3294 3265 1638 183 102 6 chr11 124934117 124934450 -25849103 + MLT1A1 LTR MaLR 1 365 0 230 294 73 55 chr11 124934450 124934527 -25849026 - L2 LINE L2 -48 3265 3184 690 327 104 13 chr11 124934664 124934982 -25848571 + MLT2E LTR ERVL 34 380 -248 350 325 52 21 chr11 124934993 124935184 -25848369 - L2 LINE L2 -720 2594 2398 2385 221 158 70 chr11 124935360 124935503 -25848050 - L1MC4 LINE L1 -137 7905 7776 2300 58 7 17 chr11 124935503 124935795 -25847758 + AluY SINE Alu 1 289 -22 2385 221 158 70 chr11 124935795 124936658 -25846895 - L1MC4 LINE L1 -266 7776 6810 199 289 79 35 chr11 124937961 124938075 -25845478 + L2 LINE L2 3153 3271 -1 2140 186 27 62 chr11 124938146 124938661 -25844892 - L1MD3 LINE L1 -8 7987 7491 460 236 20 10 chr11 124938674 124938772 -25844781 - MLT1F1 LTR MaLR -442 125 35 600 193 55 79 chr11 124938827 124938970 -25844583 - Charlie4a DNA MER1_type -1491 470 332 3853 141 24 31 chr11 124938970 124939586 -25843967 + LTR9 LTR ERV1 1 612 0 600 193 55 79 chr11 124939586 124939644 -25843909 - Charlie4a DNA MER1_type -1629 332 274 263 146 62 0 chr11 124939696 124939744 -25843809 - Charlie4a DNA MER1_type -333 175 125 16848 162 35 13 chr11 124939753 124941664 -25841889 + L1PB1 LINE L1 114 1980 -4887 2219 119 0 7 chr11 124941664 124941967 -25841586 + AluSx SINE Alu 5 305 -7 16848 162 35 13 chr11 124941967 124945502 -25838051 + L1PB1 LINE L1 1980 5434 -1433 2341 103 0 0 chr11 124945502 124945803 -25837750 + AluSc SINE Alu 1 301 -8 16848 162 35 13 chr11 124945803 124946584 -25836969 + L1PB1 LINE L1 5434 6196 -671 189 0 0 0 chr11 124946584 124946605 -25836948 + (TA)n Simple_repeat Simple_repeat 2 22 0 16848 162 35 13 chr11 124946605 124946789 -25836764 + L1PB1 LINE L1 6196 6374 -493 2015 131 3 7 chr11 124946789 124947086 -25836467 + AluSx SINE Alu 1 296 -16 16848 162 35 13 chr11 124947086 124947274 -25836279 + L1PB1 LINE L1 6374 6866 -1 490 210 10 0 chr11 124947313 124947413 -25836140 - Charlie4a DNA MER1_type -390 118 18 520 288 48 46 chr11 124947687 124948038 -25835515 + L1ME4a LINE L1 5471 5822 -299 364 313 56 6 chr11 124948086 124948246 -25835307 + MIR SINE MIR 94 261 -1 287 229 131 8 chr11 124948321 124948443 -25835110 + L1ME4a LINE L1 5959 6095 -26 654 95 0 0 chr11 124948641 124948736 -25834817 + (TTTCC)n Simple_repeat Simple_repeat 1 95 0 564 116 0 0 chr11 124948756 124948842 -25834711 + (TCCC)n Simple_repeat Simple_repeat 1 86 0 1503 179 47 18 chr11 124948842 124949116 -25834437 - AluJo SINE Alu -30 282 1 221 306 0 0 chr11 124949278 124949340 -25834213 + L2 LINE L2 3211 3272 0 503 302 160 4 chr11 124949774 124949999 -25833554 + MIR SINE MIR 2 261 -1 1745 124 81 7 chr11 124950470 124950753 -25832800 - AluSx SINE Alu -8 304 1 222 276 46 35 chr11 124950920 124951007 -25832546 + L3b LINE CR1 1285 1372 -211 798 230 170 11 chr11 124951240 124951510 -25832043 - MLT1I LTR MaLR -1 408 96 301 211 168 11 chr11 124951790 124951885 -25831668 - L2 LINE L2 0 3313 3204 378 337 103 40 chr11 124952211 124952463 -25831090 + L2 LINE L2 2918 3185 -87 588 210 164 90 chr11 124952484 124952589 -25830964 + Charlie2 DNA MER1_type 2396 2492 -370 2083 129 0 32 chr11 124952589 124952898 -25830655 + AluSx SINE Alu 1 299 -13 588 210 164 90 chr11 124952898 124953102 -25830451 + Charlie2 DNA MER1_type 2492 2728 -134 1421 218 129 73 chr11 124953247 124953729 -25829824 - MLT1J LTR MaLR -2 509 1 670 304 199 24 chr11 124953729 124954548 -25829005 + L2 LINE L2 2305 3274 -39 805 249 5 15 chr11 124954695 124954896 -25828657 - MIR SINE MIR 0 262 64 1406 149 24 49 chr11 124954902 124955190 -25828363 - LTR26 LTR ERV1 -4 599 319 2024 131 36 0 chr11 124955264 124955570 -25827983 - LTR26 LTR ERV1 -286 317 1 222 258 16 16 chr11 124955601 124955663 -25827890 + L2 LINE L2 3245 3306 -7 * 321 194 30 0 chr11 124955662 124955729 -25827824 - MIR SINE MIR -181 81 13 4763 113 11 47 chr11 124956869 124957586 -25825967 + LTR8 LTR ERV1 1 691 0 343 202 60 48 chr11 124957600 124957684 -25825869 - MIR SINE MIR -89 173 89 358 250 0 42 chr11 124957971 124958091 -25825462 + C-rich Low_complexity Low_complexity 4 118 0 340 304 40 16 chr11 124958766 124958891 -25824662 - MIR SINE MIR -75 187 60 309 306 75 46 chr11 124958967 124959140 -25824413 - MER5A DNA MER1_type -11 178 1 199 254 56 28 chr11 124960407 124960478 -25823075 - L2 LINE L2 -92 3221 3149 288 281 238 74 chr11 124960646 124961311 -25822242 + L2 LINE L2 2188 2961 -353 696 139 19 9 chr11 124961377 124961485 -25822068 + MER3 DNA MER1_type 1 109 -100 231 88 0 0 chr11 124961561 124961595 -25821958 + MER3 DNA MER1_type 147 180 -29 559 351 67 55 chr11 124961607 124961796 -25821757 - L2 LINE L2 -17 3255 3070 1977 170 98 8 chr11 124961796 124962154 -25821399 - MLT1B LTR MaLR 0 390 1 559 351 67 55 chr11 124962154 124962368 -25821185 - L2 LINE L2 -202 3070 2847 337 235 49 12 chr11 124962477 124962558 -25820995 + MLT1F1 LTR MaLR 42 125 -442 1739 202 63 19 chr11 124962558 124962968 -25820585 + L1MC3 LINE L1 7189 7616 -169 746 277 54 22 chr11 124962973 124963341 -25820212 + L1ME LINE L1 4465 4844 -1302 320 281 85 24 chr11 124963497 124963661 -25819892 + L1ME LINE L1 5099 5272 -874 3430 176 57 18 chr11 124963665 124964403 -25819150 + LTR1B LTR ERV1 1 785 0 832 173 16 0 chr11 124964415 124964542 -25819011 + FLAM_A SINE Alu 2 130 -3 628 268 66 25 chr11 124964549 124964880 -25818673 + L1M2 LINE L1 5270 5566 -746 270 229 107 33 chr11 124964852 124964974 -25818579 + L1ME LINE L1 5667 5797 -367 * 942 241 145 29 chr11 124965114 124965556 -25817997 + MLT1H LTR MaLR 3 549 0 637 300 178 35 chr11 124965843 124966393 -25817160 - L2 LINE L2 -1707 1607 979 328 347 42 36 chr11 124966393 124966560 -25816993 + L2 LINE L2 3103 3270 -2 21 71 0 0 chr11 124967083 124967125 -25816428 + AT_rich Low_complexity Low_complexity 1 42 0 226 233 0 0 chr11 124967989 124968032 -25815521 + (TG)n Simple_repeat Simple_repeat 1 43 0 564 227 116 71 chr11 124969245 124969443 -25814110 + MER63A DNA MER1_type 4 210 0 3633 154 26 21 chr11 124972129 124972783 -25810770 - L1MB8 LINE L1 -5 6173 5517 1229 259 155 0 chr11 124972905 124973325 -25810228 + LTR33 LTR ERVL 37 521 0 239 218 256 0 chr11 124973601 124973679 -25809874 + MIR SINE MIR 117 214 -48 295 294 0 24 chr11 124974937 124975022 -25808531 - MIR SINE MIR -104 158 76 350 336 86 38 chr11 124976022 124976605 -25806948 + L2 LINE L2 2065 2675 -639 706 302 58 0 chr11 124977021 124977226 -25806327 + MIR SINE MIR 31 247 -15 215 258 15 0 chr11 124977321 124977387 -25806166 + (TTA)n Simple_repeat Simple_repeat 1 67 0 566 273 67 26 chr11 124977475 124977669 -25805884 - MIR SINE MIR -48 214 13 220 315 0 0 chr11 124977700 124977754 -25805799 + L2 LINE L2 3216 3269 -3 753 234 36 0 chr11 124978036 124978203 -25805350 - MER5B DNA MER1_type 0 178 6 377 333 19 0 chr11 124978687 124978792 -25804761 - L3 LINE CR1 -10 1567 1461 4644 187 36 14 chr11 124978922 124980519 -25803034 - L1MB8 LINE L1 -6 6172 4499 1394 252 80 52 chr11 124980687 124981440 -25802113 - L2 LINE L2 0 3313 2477 261 0 0 0 chr11 124981587 124981616 -25801937 + (TTG)n Simple_repeat Simple_repeat 2 30 0 252 264 36 36 chr11 124983183 124983350 -25800203 + (CA)n Simple_repeat Simple_repeat 1 167 0 2228 109 0 0 chr11 124984465 124984762 -25798791 + AluSx SINE Alu 1 294 -18 195 192 0 96 chr11 124986067 124986119 -25797434 + MIR SINE MIR 137 183 -79 588 236 186 0 chr11 124987459 124987679 -25795874 - MIR SINE MIR 0 262 2 304 240 19 19 chr11 124988521 124988625 -25794928 + (TTTA)n Simple_repeat Simple_repeat 2 105 0 332 182 39 0 chr11 124988633 124988710 -25794843 - MER116 DNA Mariner 0 80 1 181 345 84 42 chr11 124990670 124990789 -25792764 + L3b LINE CR1 1316 1439 -144 437 271 163 40 chr11 124991008 124991259 -25792294 - L3 LINE CR1 -138 1439 1158 349 338 207 20 chr11 124991373 124991967 -25791586 + L2 LINE L2 1926 2630 -684 319 311 34 40 chr11 124992506 124992654 -25790899 + L2 LINE L2 3125 3271 -1 233 338 0 29 chr11 124992842 124992910 -25790643 + L2 LINE L2 3207 3272 0 1117 294 93 17 chr11 124992911 124993394 -25790159 - L3 LINE CR1 -544 1033 514 273 208 19 0 chr11 124993976 124994029 -25789524 + L2 LINE L2 3214 3267 -5 192 40 0 0 chr11 124994134 124994159 -25789394 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 407 301 20 14 chr11 124995251 124995397 -25788156 - MIR3 SINE MIR -16 192 46 20511 184 33 11 chr11 124995936 125002569 -25780984 - L1PA13 LINE L1 0 6814 1 194 366 75 30 chr11 125003169 125003303 -25780250 - L2 LINE L2 0 3272 3133 254 28 0 28 chr11 125003563 125003599 -25779954 + (TTTTG)n Simple_repeat Simple_repeat 4 38 0 226 249 227 30 chr11 125005273 125005603 -25777950 + HAL1 LINE L1 831 1225 -1282 204 232 268 0 chr11 125008095 125008151 -25775402 - L2 LINE L2 0 3313 3243 307 302 15 15 chr11 125008837 125008959 -25774594 + CT-rich Low_complexity Low_complexity 2 202 0 350 203 0 0 chr11 125009310 125009379 -25774174 + MIR3 SINE MIR 118 186 -22 397 253 72 33 chr11 125010732 125010917 -25772636 + MIR SINE MIR 2 191 -68 205 352 73 45 chr11 125012009 125012256 -25771297 + L3b LINE CR1 1190 1443 -140 604 75 0 0 chr11 125012320 125012400 -25771153 - MADE1 DNA Mariner 0 80 1 1669 159 22 0 chr11 125012635 125012938 -25770615 - AluSx SINE Alu 0 309 1 440 293 99 37 chr11 125012953 125013144 -25770409 - MIR SINE MIR -17 245 43 440 305 85 11 chr11 125013180 125013357 -25770196 + MIR SINE MIR 73 262 0 201 147 0 0 chr11 125014465 125014499 -25769054 + (CA)n Simple_repeat Simple_repeat 2 35 0 225 222 22 0 chr11 125014634 125014679 -25768874 - MIR3 SINE MIR -11 197 152 1208 205 107 22 chr11 125014683 125015000 -25768553 + MER2 DNA MER2_type 1 344 0 336 186 0 17 chr11 125015062 125015121 -25768432 - MIR3 SINE MIR -50 158 101 497 277 66 30 chr11 125015290 125015456 -25768097 + MIR SINE MIR 79 250 -12 247 385 77 6 chr11 125015804 125015973 -25767580 + L2 LINE L2 2606 2786 -528 450 235 0 0 chr11 125016606 125016687 -25766866 - MIR SINE MIR -95 167 87 407 242 59 52 chr11 125017292 125017445 -25766108 - MIR SINE MIR -46 216 63 350 207 0 0 chr11 125017889 125017947 -25765606 - L2 LINE L2 0 3313 3256 196 330 182 0 chr11 125018804 125018892 -25764661 + MIR SINE MIR 18 121 -87 1285 264 71 35 chr11 125018958 125019466 -25764087 + MLT1K LTR MaLR 62 587 -1 253 226 90 68 chr11 125019781 125019914 -25763639 + MER65B LTR ERV1 245 380 -151 517 222 81 90 chr11 125020101 125020335 -25763218 + L2 LINE L2 3080 3311 -2 392 313 64 47 chr11 125020487 125020720 -25762833 - L2 LINE L2 -20 3252 3016 496 252 137 62 chr11 125021863 125022089 -25761464 + MIR SINE MIR 17 259 -3 456 19 0 0 chr11 125022422 125022475 -25761078 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 190 278 256 11 chr11 125022475 125022565 -25760988 - L2 LINE L2 -14 3258 3147 5395 115 31 24 chr11 125022647 125023515 -25760038 - L1PA16 LINE L1 0 6166 5293 4967 124 52 18 chr11 125023505 125024293 -25759260 - L1PB1 LINE L1 -1 6150 5331 * 2171 111 3 0 chr11 125024293 125024590 -25758963 - AluSg SINE Alu -12 298 1 4967 124 52 18 chr11 125024590 125024621 -25758932 - L1PB1 LINE L1 -820 5331 5303 2582 175 31 30 chr11 125024619 125025195 -25758358 + L1PB1 LINE L1 4710 5286 -860 * 638 108 0 10 chr11 125025269 125025371 -25758182 + (GGAA)n Simple_repeat Simple_repeat 4 104 0 354 183 0 0 chr11 125026337 125026408 -25757145 + GA-rich Low_complexity Low_complexity 1 71 0 5129 195 72 18 chr11 125026423 125027780 -25755773 - L1MD2 LINE L1 -10 6349 4928 197 113 32 32 chr11 125027909 125027971 -25755582 + (TTATA)n Simple_repeat Simple_repeat 3 64 0 413 297 55 61 chr11 125027998 125028159 -25755394 - MIR SINE MIR -66 142 30 512 248 108 70 chr11 125029873 125030087 -25753466 + MIR SINE MIR 41 262 0 15380 179 36 12 chr11 125031892 125031945 -25751608 - L1PBa LINE L1 -1110 5752 5702 2218 103 0 0 chr11 125031945 125032245 -25751308 - AluSc SINE Alu -9 300 1 15380 179 36 12 chr11 125032245 125035780 -25747773 - L1PBa LINE L1 -1160 5702 1978 2261 125 0 0 chr11 125035780 125036083 -25747470 - AluSx SINE Alu -5 307 5 15380 179 36 12 chr11 125036083 125037994 -25745559 - L1PBa LINE L1 -4884 1978 114 249 146 62 0 chr11 125038003 125038051 -25745502 + Charlie4a DNA MER1_type 125 175 -333 536 193 55 79 chr11 125038103 125038161 -25745392 + Charlie4a DNA MER1_type 274 332 -1629 3679 140 24 31 chr11 125038161 125038777 -25744776 - LTR9 LTR ERV1 0 612 1 536 193 55 79 chr11 125038777 125038920 -25744633 + Charlie4a DNA MER1_type 332 470 -38 438 236 20 10 chr11 125038975 125039073 -25744480 + MLT1F1 LTR MaLR 35 133 -442 2271 111 0 0 chr11 125039982 125040279 -25743274 + AluSx SINE Alu 1 297 -15 195 192 0 96 chr11 125041584 125041636 -25741917 + MIR SINE MIR 137 183 -79 595 236 186 0 chr11 125042976 125043196 -25740357 - MIR SINE MIR 0 262 2 304 240 19 19 chr11 125044038 125044142 -25739411 + (TTTA)n Simple_repeat Simple_repeat 2 105 0 331 182 39 0 chr11 125044150 125044227 -25739326 - MER116 DNA Mariner 0 80 1 454 291 147 24 chr11 125046525 125046776 -25736777 - L3 LINE CR1 -138 1439 1158 393 349 199 12 chr11 125046890 125047484 -25736069 + L2 LINE L2 1926 2630 -684 325 311 34 40 chr11 125048023 125048171 -25735382 + L2 LINE L2 3125 3271 -1 232 338 0 29 chr11 125048359 125048427 -25735126 + L2 LINE L2 3207 3272 0 1115 294 93 17 chr11 125048428 125048911 -25734642 - L3 LINE CR1 -544 1033 514 274 208 19 0 chr11 125049493 125049546 -25734007 + L2 LINE L2 3214 3267 -5 192 40 0 0 chr11 125049651 125049676 -25733877 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 419 301 20 14 chr11 125050768 125050914 -25732639 - MIR3 SINE MIR -16 192 46 19470 185 32 11 chr11 125051453 125058086 -25725467 - L1PA13 LINE L1 0 6814 1 187 312 119 0 chr11 125059334 125059443 -25724110 - MER5A DNA MER1_type -26 163 42 216 221 15 88 chr11 125059614 125059682 -25723871 + L3 LINE CR1 399 461 -1116 357 277 55 88 chr11 125059698 125059972 -25723581 + L3 LINE CR1 727 991 -586 838 223 33 0 chr11 125060008 125060192 -25723361 - MIR SINE MIR -28 234 45 383 312 36 94 chr11 125060317 125060625 -25722928 + L3 LINE CR1 1121 1410 -167 460 259 28 28 chr11 125061069 125061177 -25722376 - L2 LINE L2 -15 3257 3150 384 307 15 15 chr11 125061175 125061312 -25722241 + MIR SINE MIR 8 144 -118 * 578 314 63 63 chr11 125061382 125061936 -25721617 - LTR67 LTR ERVL -2 555 2 211 224 197 0 chr11 125062458 125062534 -25721019 - MIR SINE MIR -6 256 166 548 200 190 15 chr11 125062702 125062902 -25720651 + MLT1K LTR MaLR 352 586 -2 246 294 73 55 chr11 125063003 125063034 -25720519 - L2 LINE L2 -19 3294 3265 1573 183 102 6 chr11 125063034 125063367 -25720186 + MLT1A1 LTR MaLR 1 365 0 246 294 73 55 chr11 125063367 125063444 -25720109 - L2 LINE L2 -48 3265 3184 622 327 104 13 chr11 125063581 125063899 -25719654 + MLT2E LTR ERVL 34 380 -248 368 330 52 21 chr11 125063910 125064101 -25719452 - L2 LINE L2 -720 2594 2398 1919 222 24 91 chr11 125064277 125064420 -25719133 - L1MC4 LINE L1 -137 7905 7754 2330 58 7 17 chr11 125064420 125064712 -25718841 + AluY SINE Alu 1 289 -22 1919 222 24 91 chr11 125064712 125065284 -25718269 - L1MC4 LINE L1 -288 7754 7238 898 202 20 20 chr11 125065372 125065575 -25717978 - L1MC4 LINE L1 -1030 7012 6810 208 354 13 0 chr11 125067328 125067407 -25716146 - MIR SINE MIR -4 258 179 794 326 51 49 chr11 125067424 125068192 -25715361 - L2 LINE L2 0 3272 2410 464 152 212 0 chr11 125068184 125068283 -25715270 + L2 LINE L2 3187 3306 -7 * 545 242 148 28 chr11 125068299 125068481 -25715072 - L2 LINE L2 -910 2404 2201 2307 120 13 0 chr11 125068489 125068797 -25714756 + AluSq SINE Alu 1 312 -1 343 218 35 11 chr11 125068823 125068910 -25714643 - L2 LINE L2 -71 3242 3154 2143 241 221 22 chr11 125069055 125070130 -25713423 - L2 LINE L2 -228 3085 1796 510 255 75 12 chr11 125070164 125070325 -25713228 - MIR SINE MIR -86 176 6 372 209 47 0 chr11 125070811 125070897 -25712656 + L1ME4a LINE L1 5774 5863 -258 237 231 0 19 chr11 125070917 125070969 -25712584 + GA-rich Low_complexity Low_complexity 2 52 0 323 261 69 23 chr11 125070987 125071117 -25712436 + L1ME4a LINE L1 5975 6110 -11 193 362 0 0 chr11 125071168 125071226 -25712327 - L2 LINE L2 -99 3173 3116 300 282 98 98 chr11 125072155 125072432 -25711121 + L2 LINE L2 2912 3188 -84 796 293 10 0 chr11 125072636 125072834 -25710719 - MIR SINE MIR -4 258 59 1752 168 20 7 chr11 125074376 125074673 -25708880 - AluJo SINE Alu -11 301 1 238 355 89 16 chr11 125074791 125074915 -25708638 + MIR3 SINE MIR 11 143 -65 271 301 24 12 chr11 125075008 125075091 -25708462 - MIR3 SINE MIR -36 172 89 264 341 34 23 chr11 125075467 125075555 -25707998 + MER91A DNA MER1_type 104 192 -4 400 288 0 72 chr11 125076302 125076441 -25707112 + MER5B DNA MER1_type 1 129 -49 228 343 78 32 chr11 125076557 125076773 -25706780 - MIR3 SINE MIR -24 238 14 2287 122 0 0 chr11 125078305 125078608 -25704945 + AluSx SINE Alu 1 303 -9 607 249 17 28 chr11 125080236 125080413 -25703140 + MER5B DNA MER1_type 4 178 0 180 167 0 0 chr11 125081432 125081462 -25702091 + L2 LINE L2 2287 2316 -998 550 233 69 25 chr11 125081545 125081704 -25701849 + MER3 DNA MER1_type 23 188 -21 227 283 48 97 chr11 125082157 125082302 -25701251 + MIR SINE MIR 28 165 -97 236 321 157 7 chr11 125083519 125083659 -25699894 + MIR SINE MIR 28 188 -74 371 282 51 0 chr11 125085661 125085778 -25697775 + L2 LINE L2 3175 3297 -16 245 143 0 20 chr11 125086529 125086578 -25696975 + (TCCC)n Simple_repeat Simple_repeat 2 49 0 234 277 92 25 chr11 125088971 125089090 -25694463 + MIR3 SINE MIR 11 137 -71 224 264 198 13 chr11 125090047 125090199 -25693354 - MIR SINE MIR 0 262 81 509 279 130 0 chr11 125090218 125090372 -25693181 + MIR SINE MIR 2 175 -87 403 226 111 83 chr11 125091858 125092039 -25691514 + MIR SINE MIR 13 198 -64 790 244 35 23 chr11 125092621 125092866 -25690687 - MIR SINE MIR -14 248 3 222 254 18 0 chr11 125095415 125095470 -25688083 - MIR SINE MIR -51 211 156 232 262 24 36 chr11 125095616 125095700 -25687853 - MIR SINE MIR -68 140 58 236 250 0 0 chr11 125095810 125095866 -25687687 + (CA)n Simple_repeat Simple_repeat 1 56 0 1882 238 63 27 chr11 125096389 125096987 -25686566 + MER74B LTR ERVL 1 620 -2 211 280 0 0 chr11 125097007 125097057 -25686496 - MIR SINE MIR -71 137 88 351 96 0 0 chr11 125097376 125097428 -25686125 + (CA)n Simple_repeat Simple_repeat 1 52 0 222 214 0 0 chr11 125098134 125098176 -25685377 + CT-rich Low_complexity Low_complexity 1 42 0 380 246 18 18 chr11 125098176 125098286 -25685267 - L2 LINE L2 0 3272 3163 392 279 125 6 chr11 125098459 125098633 -25684920 - MIR SINE MIR -59 149 5 196 307 59 40 chr11 125098716 125098817 -25684736 - MIR SINE MIR -64 144 42 256 304 39 20 chr11 125098936 125099038 -25684515 - MIR SINE MIR -2 260 157 188 306 129 24 chr11 125099290 125099414 -25684139 + MIR3 SINE MIR 8 144 -64 212 351 11 32 chr11 125099479 125099573 -25683980 - MIR SINE MIR -158 104 13 731 217 13 7 chr11 125100234 125100386 -25683167 - MIR SINE MIR -4 258 106 194 397 30 15 chr11 125101183 125101212 -25682341 + MIR SINE MIR 94 121 -141 2377 104 0 22 chr11 125101212 125101529 -25682024 - AluSg SINE Alu 0 310 1 194 397 30 15 chr11 125101529 125101630 -25681923 + MIR SINE MIR 121 226 -36 566 268 54 36 chr11 125101922 125102146 -25681407 + MIR SINE MIR 35 262 0 185 274 0 0 chr11 125102900 125102951 -25680602 - L2 LINE L2 0 3272 3222 652 342 117 18 chr11 125103003 125103654 -25679899 - L2 LINE L2 0 3272 2563 276 275 100 50 chr11 125103631 125103791 -25679762 - L2 LINE L2 -164 3108 2941 * 283 329 116 67 chr11 125103902 125104291 -25679262 - L2 LINE L2 -551 2763 2356 241 306 32 0 chr11 125104875 125104937 -25678616 - L2 LINE L2 0 3272 3209 235 232 43 0 chr11 125105060 125105129 -25678424 - MIR SINE MIR -48 214 143 241 233 0 0 chr11 125105130 125105173 -25678380 + 5S rRNA rRNA 1 43 -78 849 277 151 18 chr11 125105685 125105702 -25677851 - LTR16A LTR ERVL 0 450 437 2048 156 7 70 chr11 125105702 125106118 -25677435 + MLT1B LTR MaLR 1 390 0 849 277 151 18 chr11 125106118 125106497 -25677056 - LTR16A LTR ERVL -13 437 1 1835 137 4 11 chr11 125106586 125106863 -25676690 - AluJo SINE Alu -17 295 21 2381 78 0 3 chr11 125107206 125107501 -25676052 - AluY SINE Alu -17 294 1 517 276 179 5 chr11 125107711 125107902 -25675651 + MIR SINE MIR 29 251 -11 562 212 7 53 chr11 125108268 125108419 -25675134 - MER104 DNA Tc2 0 180 37 214 261 36 81 chr11 125109494 125109605 -25673948 - L3b LINE CR1 -138 1445 1340 477 50 0 0 chr11 125110239 125110299 -25673254 + (TC)n Simple_repeat Simple_repeat 2 61 0 1592 202 72 41 chr11 125114187 125114703 -25668850 + L1MC5 LINE L1 7380 7911 -50 422 300 62 8 chr11 125115076 125115206 -25668347 - MIR SINE MIR -10 252 116 462 259 175 5 chr11 125116183 125116372 -25667181 + MIR SINE MIR 37 257 -5 356 267 11 0 chr11 125117429 125117519 -25666034 - MIR3 SINE MIR -1 207 117 2192 117 3 0 chr11 125117521 125117812 -25665741 + AluSx SINE Alu 1 292 -20 1375 188 6 31 chr11 125117840 125118159 -25665394 + AluJo SINE Alu 1 311 -1 409 208 0 24 chr11 125118161 125118286 -25665267 + GA-rich Low_complexity Low_complexity 3 124 0 245 29 29 0 chr11 125118450 125118484 -25665069 + (TA)n Simple_repeat Simple_repeat 1 35 0 2394 104 0 43 chr11 125118492 125118866 -25664687 + L1PB1 LINE L1 5794 6151 0 503 275 139 23 chr11 125119271 125119617 -25663936 + LTR33 LTR ERVL 1 386 -135 2046 89 16 0 chr11 125119623 125119880 -25663673 - AluSq SINE Alu -52 261 1 184 296 0 14 chr11 125121873 125121944 -25661609 - MIR SINE MIR -25 237 168 683 242 26 26 chr11 125122073 125122263 -25661290 + MER117 DNA MER1_type 2 191 -6 764 333 0 0 chr11 125122383 125122599 -25660954 + MIR SINE MIR 47 262 0 303 344 72 8 chr11 125123542 125123667 -25659886 + L2 LINE L2 301 433 -2881 231 317 0 0 chr11 125124220 125124280 -25659273 + L2 LINE L2 3251 3310 -3 219 36 0 0 chr11 125124353 125124381 -25659172 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 231 339 68 0 chr11 125124381 125124484 -25659069 - MIR SINE MIR -85 123 20 251 376 32 21 chr11 125124526 125124712 -25658841 - L2 LINE L2 -219 3053 2866 236 252 54 45 chr11 125125481 125125592 -25657961 - L1ME4a LINE L1 -41 6080 5969 22 0 0 0 chr11 125125594 125125616 -25657937 + AT_rich Low_complexity Low_complexity 1 22 0 1487 174 62 22 chr11 125125666 125125941 -25657612 - AluJo SINE Alu -25 287 2 315 304 9 26 chr11 125125983 125126098 -25657455 - L1MC4a LINE L1 -1914 5894 5782 578 337 101 22 chr11 125126207 125126664 -25656889 + L2 LINE L2 2815 3307 -6 239 217 116 78 chr11 125126685 125126814 -25656739 - L1MC4a LINE L1 -486 5635 5502 2400 210 57 15 chr11 125129103 125129647 -25653906 + MLT1F1 LTR MaLR 1 567 0 247 279 48 83 chr11 125129715 125129944 -25653609 + L1ME LINE L1 5600 5820 -301 * 517 264 122 45 chr11 125129939 125130488 -25653065 + L1ME LINE L1 3426 4016 -2130 2434 56 0 0 chr11 125130497 125130830 -25652723 + AluY SINE Alu 1 333 0 505 315 0 0 chr11 125130831 125131028 -25652525 + L1ME LINE L1 4080 4276 -1870 314 98 20 0 chr11 125131032 125131083 -25652470 + Charlie1 DNA MER1_type 2457 2508 -253 410 245 92 11 chr11 125131093 125131277 -25652276 - L1MC4a LINE L1 -1556 4590 4392 1240 185 104 48 chr11 125131277 125131352 -25652201 - Charlie1a DNA MER1_type -2407 354 285 2306 110 0 7 chr11 125131352 125131653 -25651900 - AluSx SINE Alu -12 300 2 1240 185 104 48 chr11 125131653 125131912 -25651641 - Charlie1a DNA MER1_type -2476 285 1 272 370 8 0 chr11 125131915 125132042 -25651511 + L1ME LINE L1 5652 5779 -391 1566 210 3 27 chr11 125132116 125132416 -25651137 + AluJo SINE Alu 1 293 -19 627 305 113 70 chr11 125133220 125133636 -25649917 + HAL1 LINE L1 1103 1536 -971 1107 139 81 12 chr11 125133637 125133810 -25649743 + AluJb SINE Alu 128 312 0 255 263 0 25 chr11 125134130 125134210 -25649343 - MIR SINE MIR -6 256 179 2449 80 0 0 chr11 125134336 125134638 -25648915 + AluY SINE Alu 1 302 -9 2205 123 0 0 chr11 125134876 125135161 -25648392 + AluSq SINE Alu 1 285 -28 282 278 56 0 chr11 125135235 125135325 -25648228 + L1MC/D LINE L1 5717 5811 -1997 385 254 116 44 chr11 125135805 125135986 -25647567 + MIR SINE MIR 13 206 -56 255 177 0 0 chr11 125136428 125136490 -25647063 + (CAGAGA)n Simple_repeat Simple_repeat 3 64 0 256 271 57 29 chr11 125138111 125138181 -25645372 - MIR SINE MIR -74 188 117 2369 141 30 59 chr11 125138794 125139233 -25644320 + MSTB LTR MaLR 1 426 0 423 0 0 0 chr11 125139386 125139433 -25644120 + (TC)n Simple_repeat Simple_repeat 1 47 0 249 269 15 77 chr11 125139577 125139707 -25643846 + G-rich Low_complexity Low_complexity 3 124 0 372 298 99 37 chr11 125140051 125140212 -25643341 - MIR3 SINE MIR -6 202 32 774 178 136 0 chr11 125140687 125140856 -25642697 - MER3 DNA MER1_type 0 209 18 266 287 0 32 chr11 125141722 125141816 -25641737 + MER5B DNA MER1_type 20 110 -68 200 114 29 0 chr11 125141928 125141963 -25641590 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 743 233 15 17 chr11 125142017 125142190 -25641363 + MER5B DNA MER1_type 4 160 -18 317 305 7 86 chr11 125142625 125142718 -25640835 - L2 LINE L2 -1 3271 3172 2135 119 44 0 chr11 125142718 125143013 -25640540 + AluSx SINE Alu 1 308 -4 447 19 0 0 chr11 125143013 125143065 -25640488 + (CA)n Simple_repeat Simple_repeat 2 53 0 317 305 7 86 chr11 125143065 125143121 -25640432 - L2 LINE L2 -98 3174 3133 311 252 94 24 chr11 125143980 125144107 -25639446 + MIR SINE MIR 97 232 -30 225 258 106 61 chr11 125144356 125144488 -25639065 + MIR SINE MIR 82 219 -43 180 353 78 52 chr11 125145591 125145707 -25637846 - L2 LINE L2 -60 3212 3094 200 344 55 47 chr11 125145861 125145989 -25637564 + L2 LINE L2 3143 3271 -1 229 272 243 0 chr11 125145991 125146094 -25637459 - MIR SINE MIR -71 191 64 287 267 68 43 chr11 125146128 125146289 -25637264 - L2 LINE L2 -189 3083 2919 214 331 206 38 chr11 125146813 125146997 -25636556 - L2 LINE L2 0 3272 3058 205 261 14 14 chr11 125147585 125147654 -25635899 + CT-rich Low_complexity Low_complexity 3 71 0 299 278 35 69 chr11 125147803 125147976 -25635577 + MIR SINE MIR 18 184 -78 229 321 0 0 chr11 125148180 125148233 -25635320 - MIR SINE MIR -80 128 76 195 286 0 0 chr11 125148379 125148421 -25635132 - MIR3 SINE MIR -41 167 126 197 242 0 15 chr11 125149008 125149065 -25634488 + (TG)n Simple_repeat Simple_repeat 1 58 -7 1574 221 53 37 chr11 125149065 125149521 -25634032 - MLT2C2 LTR ERVL 0 464 2 197 242 0 15 chr11 125149521 125149529 -25634024 + (TG)n Simple_repeat Simple_repeat 58 65 0 241 301 0 58 chr11 125150208 125150311 -25633242 - L3b LINE CR1 -211 1372 1276 609 318 33 6 chr11 125150364 125150729 -25632824 - L1M4 LINE L1 -1315 4831 4457 1140 248 71 3 chr11 125150742 125151052 -25632501 - LTR16C LTR ERVL -4 487 157 314 285 220 5 chr11 125151202 125151388 -25632165 + L3 LINE CR1 1307 1532 -45 354 186 20 10 chr11 125152837 125152939 -25630614 + CT-rich Low_complexity Low_complexity 2 104 0 757 314 138 6 chr11 125152939 125153286 -25630267 - L2 LINE L2 -1 3312 2920 200 224 0 60 chr11 125154703 125154770 -25628783 + A-rich Low_complexity Low_complexity 3 65 0 823 131 16 0 chr11 125154947 125155069 -25628484 + AluSg/x SINE Alu 182 305 -5 4998 86 45 40 chr11 125155115 125156328 -25627225 + SVA Other Other 1 1413 0 2180 121 3 13 chr11 125156565 125156871 -25626682 - AluSq SINE Alu -10 303 1 449 224 0 95 chr11 125156929 125157077 -25626476 + MIR SINE MIR 32 164 -63 390 273 25 130 chr11 125157108 125157346 -25626207 + MIR SINE MIR 47 259 -3 235 341 167 8 chr11 125157486 125157612 -25625941 - L2 LINE L2 -8 3264 3119 515 257 148 16 chr11 125157953 125158136 -25625417 - MER63A DNA MER1_type 0 210 4 632 172 0 0 chr11 125158185 125158284 -25625269 + AluSg/x SINE Alu 195 293 -17 408 286 79 8 chr11 125158285 125158411 -25625142 - MIR SINE MIR -108 154 20 862 135 28 0 chr11 125158572 125158713 -25624840 + L1MB2 LINE L1 5687 5831 -337 * 5126 184 33 11 chr11 125158711 125158986 -25624567 + L1MA7 LINE L1 4800 5068 -1223 2169 100 3 50 chr11 125158986 125159305 -25624248 + AluSg SINE Alu 1 304 -6 5126 184 33 11 chr11 125159305 125160484 -25623069 + L1MA7 LINE L1 5068 6291 0 1860 179 26 6 chr11 125160493 125160844 -25622709 + L1MB2 LINE L1 5814 6171 0 211 289 193 0 chr11 125161060 125161143 -25622410 + MIR SINE MIR 35 133 -129 201 74 0 0 chr11 125162565 125162592 -25620961 + (TG)n Simple_repeat Simple_repeat 2 28 0 505 313 94 22 chr11 125162931 125163155 -25620398 + MIR SINE MIR 23 262 0 416 234 131 22 chr11 125163300 125163437 -25620116 - MIR3 SINE MIR -20 188 37 1882 153 38 3 chr11 125163494 125163841 -25619712 + L1MA4 LINE L1 5927 6285 -15 388 282 97 8 chr11 125165511 125165635 -25617918 + MIR3 SINE MIR 26 160 -48 214 238 0 0 chr11 125165635 125165677 -25617876 + L2 LINE L2 3226 3267 -5 769 231 91 36 chr11 125166212 125166519 -25617034 + MLT1C LTR MaLR 22 345 -122 244 203 34 17 chr11 125166742 125166801 -25616752 - L2 LINE L2 -1 3312 3253 244 292 118 42 chr11 125167300 125167444 -25616109 + MIR3 SINE MIR 39 193 -15 481 337 57 74 chr11 125167592 125167945 -25615608 - L2 LINE L2 -31 3241 2895 546 349 144 13 chr11 125168334 125168792 -25614761 + L2 LINE L2 564 1081 -2233 592 306 59 70 chr11 125168802 125169031 -25614522 + L2 LINE L2 2456 2686 -628 1828 148 46 0 chr11 125169031 125169314 -25614239 - AluSx SINE Alu -16 296 1 592 306 59 70 chr11 125169314 125169331 -25614222 + L2 LINE L2 2686 2702 -612 306 0 0 0 chr11 125169331 125169365 -25614188 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 592 306 59 70 chr11 125169365 125169561 -25613992 + L2 LINE L2 2702 2894 -420 226 193 106 26 chr11 125169605 125169688 -25613865 + MIR SINE MIR 33 119 -112 674 318 36 24 chr11 125169824 125170076 -25613477 - MIR SINE MIR 0 262 8 327 267 114 46 chr11 125170670 125170801 -25612752 - L2 LINE L2 -6 3307 3168 788 312 44 0 chr11 125171976 125172226 -25611327 - MIR SINE MIR -1 261 1 236 299 46 35 chr11 125172319 125172406 -25611147 - MIR SINE MIR -94 168 81 1810 165 11 11 chr11 125172448 125172767 -25610786 - AluSx SINE Alu 0 319 1 623 209 28 138 chr11 125173398 125173519 -25610034 + MIR SINE MIR 37 119 -143 1603 147 4 16 chr11 125173519 125173804 -25609749 + AluJo SINE Alu 47 328 0 623 209 28 138 chr11 125173804 125173933 -25609620 + MIR SINE MIR 119 261 -1 186 103 0 0 chr11 125176095 125176124 -25607429 + (CA)n Simple_repeat Simple_repeat 2 30 0 357 310 35 35 chr11 125177202 125177347 -25606206 - MER5A DNA MER1_type -2 187 43 315 0 0 0 chr11 125178673 125178708 -25604845 + (A)n Simple_repeat Simple_repeat 1 35 0 265 361 0 0 chr11 125178717 125178800 -25604753 - MIR SINE MIR -87 121 39 243 274 98 0 chr11 125179063 125179165 -25604388 - L3b LINE CR1 -343 1240 1129 753 267 24 28 chr11 125180210 125180457 -25603096 + Charlie8 DNA MER1_type 1 246 -2171 1024 107 0 0 chr11 125180546 125180677 -25602876 + AluY SINE Alu 11 141 -170 875 108 0 0 chr11 125180677 125180797 -25602756 + AluSg/x SINE Alu 179 298 -14 464 172 107 8 chr11 125180851 125180973 -25602580 + L1MC5 LINE L1 7701 7834 -127 277 289 70 91 chr11 125182033 125182275 -25601278 + L2 LINE L2 3005 3241 -31 1999 130 31 3 chr11 125182867 125183159 -25600394 - AluSx SINE Alu -1 311 12 437 286 32 24 chr11 125183509 125183635 -25599918 - L2 LINE L2 -2 3270 3144 1990 158 20 0 chr11 125183919 125184268 -25599285 + L1MD3 LINE L1 7620 7975 -20 353 263 217 30 chr11 125184549 125184747 -25598806 - MIR SINE MIR -5 257 23 359 369 75 19 chr11 125185215 125185429 -25598124 - MIR SINE MIR -14 248 23 186 189 0 0 chr11 125186308 125186345 -25597208 + A-rich Low_complexity Low_complexity 1 37 0 346 324 20 59 chr11 125186512 125186716 -25596837 + MIR3 SINE MIR 11 206 -2 335 248 191 0 chr11 125188945 125189050 -25594503 - Charlie8 DNA MER1_type -2218 199 75 346 277 15 36 chr11 125189162 125189299 -25594254 - MIR SINE MIR -80 182 49 3075 189 48 26 chr11 125189357 125189980 -25593573 + ERVL LTR ERVL 1574 2210 -3554 800 200 67 67 chr11 125190156 125190316 -25593237 + LTR37B LTR ERV1 184 347 -121 2005 110 8 0 chr11 125190316 125190606 -25592947 - AluSx SINE Alu 0 309 18 800 200 67 67 chr11 125190606 125190729 -25592824 + LTR37B LTR ERV1 346 468 0 342 67 0 0 chr11 125191259 125191304 -25592249 + (TG)n Simple_repeat Simple_repeat 1 45 0 583 269 34 64 chr11 125192332 125192596 -25590957 - MIR SINE MIR -1 261 6 501 245 29 44 chr11 125193386 125193550 -25590003 + MIR SINE MIR 56 221 -41 2344 112 0 6 chr11 125193550 125193862 -25589691 + AluSx SINE Alu 1 310 -2 501 245 29 44 chr11 125193862 125193900 -25589653 + MIR SINE MIR 221 258 -4 6397 51 13 0 chr11 125193900 125194684 -25588869 + L1PA8 LINE L1 5377 6170 -2 225 0 0 0 chr11 125194718 125194743 -25588810 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 315 0 0 0 chr11 125194742 125194777 -25588776 + (GA)n Simple_repeat Simple_repeat 2 36 0 2277 93 0 0 chr11 125194777 125195056 -25588497 - AluSp SINE Alu -34 279 1 242 302 201 55 chr11 125195468 125195776 -25587777 + L3 LINE CR1 268 620 -957 637 291 32 28 chr11 125196095 125196346 -25587207 + MIR SINE MIR 11 262 0 262 267 0 0 chr11 125196471 125196531 -25587022 + (CA)n Simple_repeat Simple_repeat 1 60 0 282 331 16 8 chr11 125196640 125196767 -25586786 + L2 LINE L2 2918 3045 -227 249 208 52 52 chr11 125196809 125196905 -25586648 + MIR SINE MIR 107 202 -60 353 298 53 0 chr11 125198147 125198278 -25585275 - MIR SINE MIR -55 207 70 289 345 14 22 chr11 125198979 125199118 -25584435 - L2 LINE L2 -25 3288 3151 465 34 0 0 chr11 125199306 125199365 -25584188 + (A)n Simple_repeat Simple_repeat 1 59 0 363 307 62 28 chr11 125199510 125199800 -25583753 + L1MC/D LINE L1 2110 2409 -3737 375 164 155 35 chr11 125199800 125199916 -25583637 + L1MA6 LINE L1 5896 6025 -275 403 196 98 68 chr11 125199945 125200108 -25583445 + L1MA6 LINE L1 5953 6120 -180 209 114 68 0 chr11 125200109 125200153 -25583400 + (TATAA)n Simple_repeat Simple_repeat 3 49 0 982 160 21 11 chr11 125200165 125200352 -25583201 + L1MA6 LINE L1 6103 6291 -9 315 350 47 12 chr11 125200387 125200644 -25582909 + L1MC/D LINE L1 2435 2700 -3446 422 309 148 28 chr11 125200659 125201261 -25582292 + L1MC/D LINE L1 2777 3450 -2696 1244 213 41 17 chr11 125201517 125201808 -25581745 - MLT1A2 LTR MaLR 0 374 77 509 265 21 38 chr11 125202004 125202242 -25581311 + L1MC/D LINE L1 5256 5489 -2319 368 222 94 34 chr11 125202221 125202338 -25581215 - L1ME LINE L1 -508 5613 5490 * 616 281 55 10 chr11 125202329 125202528 -25581025 + L1MC/D LINE L1 5530 5737 -2071 478 233 159 17 chr11 125202852 125203028 -25580525 - MIR SINE MIR -12 250 50 364 310 61 83 chr11 125203697 125204058 -25579495 + L2 LINE L2 2918 3270 -2 304 221 101 105 chr11 125204358 125204672 -25578881 + MLT1G1 LTR MaLR 224 555 0 363 345 0 0 chr11 125205457 125205570 -25577983 + L2 LINE L2 3160 3272 0 328 268 152 37 chr11 125206009 125206173 -25577380 - MER5A DNA MER1_type -3 186 4 366 345 12 3 chr11 125207184 125207365 -25576188 - MIR SINE MIR -61 147 16 952 85 36 6 chr11 125207933 125208098 -25575455 + CT-rich Low_complexity Low_complexity 3 172 0 377 241 69 9 chr11 125208464 125208580 -25574973 - MIR3 SINE MIR -4 204 82 391 333 20 0 chr11 125208968 125209121 -25574432 + MIR SINE MIR 37 192 -70 1657 176 16 90 chr11 125209723 125210034 -25573519 - MLT1A1 LTR MaLR 0 365 32 290 0 75 0 chr11 125210034 125210074 -25573479 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 2052 97 4 0 chr11 125210075 125210334 -25573219 - AluSp SINE Alu -33 280 21 1657 176 16 90 chr11 125210334 125210407 -25573146 - MLT1A1 LTR MaLR -332 33 8 2439 152 39 7 chr11 125211633 125212067 -25571486 + L1MB3 LINE L1 5683 6130 -53 339 157 0 0 chr11 125212068 125212119 -25571434 + AluS SINE Alu 7 57 -243 383 141 56 14 chr11 125212119 125212190 -25571363 + L1MB3 LINE L1 6057 6130 -53 2337 91 17 0 chr11 125212191 125212489 -25571064 + AluSq SINE Alu 7 309 -4 225 0 0 0 chr11 125212628 125212653 -25570900 + (A)n Simple_repeat Simple_repeat 1 25 0 593 252 61 125 chr11 125213268 125213661 -25569892 - LTR67 LTR ERVL -32 525 158 322 292 128 14 chr11 125213814 125214033 -25569520 + L2 LINE L2 2513 2756 -558 217 314 17 25 chr11 125214227 125214345 -25569208 + MER5A DNA MER1_type 47 163 -26 233 217 0 0 chr11 125214382 125214428 -25569125 - MIR SINE MIR -60 148 103 217 319 156 63 chr11 125215052 125215353 -25568200 + L2 LINE L2 2939 3267 -5 4513 161 31 33 chr11 125217137 125217202 -25566351 + L1P5 LINE L1 4334 4398 -1753 189 0 0 0 chr11 125217202 125217223 -25566330 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 4513 161 31 33 chr11 125217223 125217385 -25566168 + L1P5 LINE L1 4398 4559 -1592 2411 94 0 0 chr11 125217385 125217694 -25565859 + AluY SINE Alu 1 309 -2 4513 161 31 33 chr11 125217694 125218840 -25564713 + L1P5 LINE L1 4559 5704 -447 289 193 72 24 chr11 125219939 125220022 -25563531 - MER103 DNA DNA -58 108 22 639 173 7 80 chr11 125270165 125270238 -25513315 - MER5A DNA MER1_type -50 139 81 1530 94 195 12 chr11 125270238 125270494 -25513059 - AluSg1 SINE Alu -6 303 1 639 173 7 80 chr11 125270494 125270570 -25512983 - MER5A DNA MER1_type -108 81 1 1337 194 4 16 chr11 125270910 125271152 -25512401 + MER8 DNA MER2_type 1 239 0 281 111 0 0 chr11 125271291 125271327 -25512226 - tRNA-Arg-AGA tRNA tRNA -40 36 1 1318 251 31 48 chr11 125271611 125272026 -25511527 + L1MB7 LINE L1 16 423 -6119 * 3310 195 109 114 chr11 125272017 125273341 -25510212 + L1MB7 LINE L1 1473 2931 -3713 873 139 0 23 chr11 125273341 125273470 -25510083 + AluJb SINE Alu 1 126 -186 3310 195 109 114 chr11 125273470 125273783 -25509770 + L1MB7 LINE L1 2931 3244 -3400 3201 165 18 21 chr11 125273785 125274344 -25509209 + L1MB7 LINE L1 5967 6525 -157 2717 147 107 2 chr11 125274344 125274801 -25508752 - LTR10B LTR ERV1 0 505 1 3201 165 18 21 chr11 125274801 125274812 -25508741 + L1MB7 LINE L1 6525 6535 -147 546 157 93 3 chr11 125274817 125274958 -25508595 - LTR47A LTR ERVL 0 452 261 862 135 21 0 chr11 125275186 125275327 -25508226 + L1MB7 LINE L1 6539 6682 0 278 233 0 5 chr11 125276730 125276798 -25506755 - MER115 DNA AcHobo -646 47 1 1252 185 22 18 chr11 125276904 125277131 -25506422 + Charlie1a DNA MER1_type 1 228 -1227 7505 40 5 2 chr11 125277168 125278735 -25504818 - L1PA3 LINE L1 -5 6150 4581 274 197 26 105 chr11 125279146 125279178 -25504375 - L2 LINE L2 -5 3267 3234 1269 257 79 11 chr11 125279178 125279559 -25503994 + MLT1I LTR MaLR 2 408 -1 274 197 26 105 chr11 125279559 125279602 -25503951 - L2 LINE L2 -38 3234 3198 221 234 0 52 chr11 125279927 125280004 -25503549 + MER5B DNA MER1_type 106 178 0 16435 107 17 15 chr11 125280958 125283368 -25500185 + L1P LINE L1 11 2424 -3722 1982 158 3 0 chr11 125284034 125284326 -25499227 - AluSx SINE Alu -18 294 2 921 232 8 8 chr11 125284328 125284565 -25498988 - L1M4 LINE L1 -3725 2421 2185 2358 58 31 3 chr11 125284760 125285052 -25498501 - AluY SINE Alu -11 300 1 863 161 19 31 chr11 125285086 125285247 -25498306 + AluJb SINE Alu 105 263 -49 225 0 0 0 chr11 125285362 125285387 -25498166 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 209 294 59 72 chr11 125286172 125286325 -25497228 + MIR SINE MIR 51 201 -61 2223 96 27 0 chr11 125286442 125286735 -25496818 - AluSg SINE Alu -9 301 1 2213 105 10 3 chr11 125286950 125287246 -25496307 + AluSq SINE Alu 1 298 -15 358 289 120 21 chr11 125287253 125287453 -25496100 - MIR SINE MIR -20 242 25 1697 114 100 7 chr11 125287999 125288270 -25495283 + MSTA LTR MaLR 133 428 0 196 269 77 26 chr11 125288270 125288348 -25495205 - L2 LINE L2 -341 2973 2892 607 64 43 0 chr11 125288509 125288603 -25494950 + L1PB2 LINE L1 6054 6151 0 207 0 0 0 chr11 125289212 125289235 -25494318 + (GA)n Simple_repeat Simple_repeat 2 24 0 214 262 221 16 chr11 125289503 125289625 -25493928 + MIR3 SINE MIR 21 167 -41 391 240 144 8 chr11 125289974 125290099 -25493454 - MER96 DNA MER1_type? -22 153 12 7160 53 5 2 chr11 125290207 125291764 -25491789 - L1PA7 LINE L1 -13 6141 4581 306 200 27 93 chr11 125292174 125292205 -25491348 - L2 LINE L2 -5 3267 3236 1281 256 78 11 chr11 125292205 125292587 -25490966 + MLT1I LTR MaLR 1 408 -1 306 200 27 93 chr11 125292587 125292630 -25490923 - L2 LINE L2 -36 3236 3198 208 324 76 48 chr11 125292887 125293032 -25490521 - MER5B DNA MER1_type -29 149 1 194 228 53 18 chr11 125293453 125293510 -25490043 + L2 LINE L2 3163 3221 -92 16482 107 17 15 chr11 125293986 125296396 -25487157 + L1P LINE L1 11 2424 -3722 1862 158 3 0 chr11 125297062 125297354 -25486199 - AluSx SINE Alu -18 294 2 7789 211 51 33 chr11 125297356 125298174 -25485379 - L1M4 LINE L1 -3725 2919 2117 1981 131 65 33 chr11 125298174 125298510 -25485043 - MER7A DNA MER2_type -1 345 1 7789 211 51 33 chr11 125298510 125298969 -25484584 - L1M4 LINE L1 -4527 2117 1668 354 45 0 0 chr11 125298969 125299013 -25484540 + (CA)n Simple_repeat Simple_repeat 2 45 0 7789 211 51 33 chr11 125299013 125300562 -25482991 - L1M4 LINE L1 -4976 1668 2 2309 139 62 34 chr11 125301018 125301434 -25482119 + MSTA LTR MaLR 1 428 0 255 61 0 0 chr11 125301485 125301518 -25482035 + (CAA)n Simple_repeat Simple_repeat 1 33 0 510 274 249 0 chr11 125301519 125301716 -25481837 - MIR SINE MIR 0 262 17 180 111 0 0 chr11 125302597 125302624 -25480929 + (TC)n Simple_repeat Simple_repeat 1 27 0 223 289 22 44 chr11 125303915 125304005 -25479548 - L2 LINE L2 -1 3312 3225 370 306 94 60 chr11 125304058 125304447 -25479106 - L2 LINE L2 -221 3051 2633 320 311 56 0 chr11 125304471 125304561 -25478992 - MIR SINE MIR -61 147 53 259 338 117 27 chr11 125304563 125304785 -25478768 + L2 LINE L2 2812 3053 -219 2348 146 8 13 chr11 125304833 125305210 -25478343 - THE1C LTR MaLR 0 375 1 8512 120 43 54 chr11 125305216 125306434 -25477119 - THE1C-int LTR MaLR -7 1573 644 4331 64 25 3 chr11 125306434 125306999 -25476554 + L1PA8 LINE L1 5596 6172 0 8512 120 43 54 chr11 125306999 125307610 -25475943 - THE1C-int LTR MaLR -936 644 28 2385 127 8 13 chr11 125307622 125307999 -25475554 - THE1C LTR MaLR 0 375 1 288 204 48 48 chr11 125309256 125309359 -25474194 + L3b LINE CR1 1276 1378 -205 221 179 0 18 chr11 125309416 125309472 -25474081 + (CAGAGA)n Simple_repeat Simple_repeat 3 57 0 770 99 8 0 chr11 125309474 125309605 -25473948 + (GA)n Simple_repeat Simple_repeat 2 133 0 456 278 61 33 chr11 125310373 125310511 -25473042 + MIR SINE MIR 78 224 -38 1560 162 47 91 chr11 125310511 125310919 -25472634 - MLT1B LTR MaLR 0 390 1 456 278 61 33 chr11 125310919 125310960 -25472593 + MIR SINE MIR 224 262 0 * 550 341 23 6 chr11 125310949 125311122 -25472431 + MIR SINE MIR 12 187 -75 511 279 8 8 chr11 125312177 125312320 -25471233 - MIR SINE MIR -65 143 9 300 337 74 0 chr11 125313867 125313962 -25469591 - L2 LINE L2 -33 3239 3138 1880 94 87 4 chr11 125314516 125314793 -25468760 - AluSx SINE Alu -12 300 1 498 181 16 159 chr11 125314878 125315060 -25468493 + L2 LINE L2 3158 3313 0 228 164 219 0 chr11 125315120 125315193 -25468360 - MIR SINE MIR -115 147 59 192 352 99 0 chr11 125315319 125315410 -25468143 - L2 LINE L2 -16 3256 3157 215 305 110 34 chr11 125316071 125316189 -25467364 - MIR SINE MIR -56 206 80 181 293 7 7 chr11 125316309 125316459 -25467094 + (CA)n Simple_repeat Simple_repeat 2 151 0 2292 109 0 0 chr11 125316591 125316903 -25466650 + AluSx SINE Alu 1 312 0 936 248 78 33 chr11 125317160 125317519 -25466034 + MER113 DNA MER1_type? 147 521 0 180 111 0 0 chr11 125318580 125318607 -25464946 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 4033 185 83 21 chr11 125318710 125319155 -25464398 - Charlie1a DNA MER1_type -1493 1268 852 2184 103 0 10 chr11 125319155 125319455 -25464098 + AluSx SINE Alu 1 297 -15 4033 185 83 21 chr11 125319455 125319771 -25463782 - Charlie1a DNA MER1_type -1909 852 436 2013 115 7 7 chr11 125319771 125320067 -25463486 + AluSq SINE Alu 1 296 -17 4033 185 83 21 chr11 125320067 125320244 -25463309 - Charlie1a DNA MER1_type -2325 436 271 45394 35 1 1 chr11 125320269 125326420 -25457133 + L1PA3 LINE L1 1 6153 -2 1249 185 22 18 chr11 125326454 125326681 -25456872 - Charlie1a DNA MER1_type -1227 228 1 283 233 0 5 chr11 125326787 125326855 -25456698 + MER115 DNA AcHobo 1 47 -646 853 135 21 0 chr11 125328258 125328399 -25455154 - L1MB7 LINE L1 0 6682 6539 546 157 93 3 chr11 125328627 125328768 -25454785 + LTR47A LTR ERVL 261 452 0 3169 165 18 21 chr11 125328773 125328784 -25454769 - L1MB7 LINE L1 -147 6535 6525 2712 147 107 2 chr11 125328784 125329241 -25454312 + LTR10B LTR ERV1 1 505 0 3169 165 18 21 chr11 125329241 125329800 -25453753 - L1MB7 LINE L1 -157 6525 5967 3236 218 108 70 chr11 125329802 125330115 -25453438 - L1MB7 LINE L1 -3400 3244 2944 819 139 0 23 chr11 125330115 125330244 -25453309 - AluJb SINE Alu -186 126 1 3236 218 108 70 chr11 125330244 125331568 -25451985 - L1MB7 LINE L1 -3700 2944 1473 1303 251 31 48 chr11 125331559 125331974 -25451579 - L1MB7 LINE L1 -6119 423 16 * 281 111 0 0 chr11 125332258 125332294 -25451259 + tRNA-Arg-AGA tRNA tRNA 1 36 -40 1333 194 4 16 chr11 125332433 125332675 -25450878 - MER8 DNA MER2_type 0 239 1 1044 150 0 64 chr11 125333015 125333091 -25450462 + MER5A DNA MER1_type 1 80 -109 1414 97 195 12 chr11 125333091 125333348 -25450205 + AluSg1 SINE Alu 1 304 -5 1044 150 0 64 chr11 125333348 125333458 -25450095 + MER5A DNA MER1_type 80 175 -14 4875 75 18 24 chr11 125333988 125334659 -25448894 + PABL_B LTR ERV1 1 667 0 640 252 19 19 chr11 125334752 125334907 -25448646 + MER5B DNA MER1_type 24 178 0 765 266 236 21 chr11 125335105 125335439 -25448114 - L2 LINE L2 -2 3311 2906 420 246 114 73 chr11 125335425 125335534 -25448019 - MIR SINE MIR -32 230 127 * 1893 118 4 0 chr11 125335534 125335804 -25447749 + AluSx SINE Alu 1 271 -41 5734 32 0 0 chr11 125335804 125336467 -25447086 + L1PA4 LINE L1 5493 6155 0 420 246 114 73 chr11 125336467 125336576 -25446977 - MIR SINE MIR -134 128 2 339 85 0 0 chr11 125336783 125336830 -25446723 + (CA)n Simple_repeat Simple_repeat 2 48 0 213 39 0 0 chr11 125337140 125337166 -25446387 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 1260 127 5 63 chr11 125337174 125337395 -25446158 - MER74A LTR ERVL -346 212 5 206 203 62 47 chr11 125337402 125337466 -25446087 + L2 LINE L2 3185 3249 -23 378 177 10 62 chr11 125338312 125338408 -25445145 - MIR SINE MIR -87 175 85 716 295 51 13 chr11 125338532 125338769 -25444784 + MIR SINE MIR 11 256 -6 1264 227 8 4 chr11 125340106 125340353 -25443200 + MIR SINE MIR 1 248 -14 296 332 83 42 chr11 125341393 125341845 -25441708 + L2 LINE L2 2715 3191 -81 232 246 18 18 chr11 125341878 125341935 -25441618 + GA-rich Low_complexity Low_complexity 3 59 0 220 250 19 0 chr11 125342119 125342171 -25441382 - MIR SINE MIR -61 147 95 289 296 70 35 chr11 125342628 125342743 -25440810 + L2 LINE L2 3149 3267 -5 240 391 43 0 chr11 125342876 125342991 -25440562 - MIR SINE MIR -108 154 35 490 191 29 0 chr11 125343670 125343775 -25439778 - MER96 DNA MER1_type? -67 108 1 883 240 128 27 chr11 125343944 125344240 -25439313 + MER115 DNA AcHobo 357 682 -11 519 191 24 0 chr11 125344652 125344736 -25438817 + AluS SINE Alu 1 86 -227 662 204 9 0 chr11 125346224 125346337 -25437216 + MER81 DNA DNA 1 114 0 241 271 9 93 chr11 125346935 125347042 -25436511 - MIR3 SINE MIR -20 188 91 2095 118 7 29 chr11 125348789 125349095 -25434458 + AluSx SINE Alu 1 299 -13 520 245 16 34 chr11 125349223 125349374 -25434179 + MIR SINE MIR 30 175 -62 1222 103 0 29 chr11 125350100 125350274 -25433279 + AluSx SINE Alu 3 171 -141 361 273 57 34 chr11 125350374 125350550 -25433003 - MLT1C LTR MaLR -146 321 142 307 84 14 113 chr11 125350560 125350631 -25432922 - MLT2C2 LTR ERVL 0 520 457 222 211 0 0 chr11 125350637 125350675 -25432878 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2302 159 68 3 chr11 125350706 125351126 -25432427 - MLT2C2 LTR ERVL -20 416 1 482 276 115 20 chr11 125351201 125351505 -25432048 - L1M4 LINE L1 -1183 4963 4631 356 307 32 83 chr11 125351534 125351752 -25431801 + HAL1 LINE L1 2 208 -2299 505 306 118 31 chr11 125352358 125353164 -25430389 + L1MEd LINE L1 682 1651 -839 300 158 0 0 chr11 125353303 125353360 -25430193 + GA-rich Low_complexity Low_complexity 2 58 0 265 316 19 51 chr11 125353640 125353685 -25429868 + L1MEd LINE L1 2093 2138 -3991 1950 224 26 34 chr11 125353685 125354154 -25429399 + MLT1C LTR MaLR 3 467 0 265 316 19 51 chr11 125354154 125354364 -25429189 + L1MEd LINE L1 2138 2340 -3789 1083 318 89 42 chr11 125354377 125356188 -25427365 + L1MEd LINE L1 2408 4302 -1827 817 187 0 0 chr11 125356189 125356312 -25427241 + FLAM_C SINE Alu 2 124 -19 322 299 100 38 chr11 125356325 125356696 -25426857 + L1MEd LINE L1 4287 4680 -1449 348 256 60 56 chr11 125356703 125356918 -25426635 + L1M4 LINE L1 4387 4602 -1544 342 0 0 0 chr11 125356931 125356969 -25426584 + (CA)n Simple_repeat Simple_repeat 2 39 0 298 214 0 43 chr11 125357562 125357632 -25425921 - L2 LINE L2 0 3313 3247 437 200 60 53 chr11 125358035 125358185 -25425368 + Charlie7 DNA MER1_type 2461 2611 -1 183 129 32 0 chr11 125358840 125358871 -25424682 + L2 LINE L2 3266 3297 -16 2712 58 3 6 chr11 125359610 125359939 -25423614 + L1PA6 LINE L1 5822 6149 -5 776 293 91 14 chr11 125360439 125360866 -25422687 - L1M4 LINE L1 -1702 4444 3985 205 378 42 0 chr11 125360869 125360988 -25422565 + MER5A DNA MER1_type 21 144 -45 24 53 0 0 chr11 125361019 125361057 -25422496 + AT_rich Low_complexity Low_complexity 1 38 0 407 362 21 0 chr11 125362181 125362322 -25421231 + MIR3 SINE MIR 58 201 -7 13237 26 1 0 chr11 125362831 125365080 -25418473 + L1PA3 LINE L1 3919 6168 0 23 78 0 0 chr11 125365121 125365172 -25418381 + AT_rich Low_complexity Low_complexity 1 51 0 423 78 0 47 chr11 125365642 125365706 -25417847 + HY4 scRNA scRNA 30 90 -3 251 118 0 0 chr11 125365833 125365867 -25417686 - MLT1A2 LTR MaLR 0 390 357 1745 123 0 20 chr11 125365868 125366154 -25417399 - AluSx SINE Alu 0 312 45 2447 65 7 3 chr11 125366226 125366532 -25417021 - AluSc SINE Alu -2 307 1 730 193 21 95 chr11 125366532 125366775 -25416778 - MLT1A2 LTR MaLR -132 242 18 1608 226 78 82 chr11 125366859 125367516 -25416037 + L1MC5 LINE L1 6435 7099 -862 2284 92 7 10 chr11 125367516 125367820 -25415733 - AluY SINE Alu -8 303 1 1608 226 78 82 chr11 125367820 125367926 -25415627 + L1MC5 LINE L1 7099 7204 -757 1118 121 25 203 chr11 125367928 125368184 -25415369 + MER33 DNA MER1_type 1 301 -2323 980 194 42 13 chr11 125368184 125368421 -25415132 + L1MA8 LINE L1 6044 6287 -4 1118 121 25 203 chr11 125368421 125368491 -25415062 + MER33 DNA MER1_type 301 287 -2337 1438 243 69 17 chr11 125368491 125368898 -25414655 + MER95 LTR ERV 1 428 -3 1118 121 25 203 chr11 125368898 125368963 -25414590 + MER33 DNA MER1_type 286 361 -2 2173 204 31 36 chr11 125368964 125369577 -25413976 + L1MC5 LINE L1 7198 7807 -154 22 0 0 0 chr11 125369614 125369636 -25413917 + AT_rich Low_complexity Low_complexity 1 22 0 2064 190 18 0 chr11 125369646 125369983 -25413570 - MER2 DNA MER2_type -1 343 1 377 254 9 27 chr11 125369987 125370097 -25413456 + L1MC5 LINE L1 7810 7917 -44 1707 144 185 50 chr11 125370100 125370462 -25413091 + LTR57 LTR ERVL 1 411 0 273 250 43 17 chr11 125370601 125370717 -25412836 + (CATATA)n Simple_repeat Simple_repeat 5 123 0 783 271 19 5 chr11 125370909 125371119 -25412434 + MIR SINE MIR 2 214 -48 278 317 40 66 chr11 125371139 125371366 -25412187 - L1ME LINE L1 -353 5768 5548 907 206 6 6 chr11 125371420 125371595 -25411958 - AluJo SINE Alu 0 312 138 1139 142 41 36 chr11 125371660 125371879 -25411674 - L1MB4 LINE L1 -4 6176 5957 308 273 0 116 chr11 125371959 125372131 -25411422 + L1ME LINE L1 5552 5703 -418 776 323 38 3 chr11 125372237 125372525 -25411028 - L2 LINE L2 -866 2448 2151 22 94 0 0 chr11 125372712 125372776 -25410777 + AT_rich Low_complexity Low_complexity 1 64 0 2208 97 10 3 chr11 125372894 125373193 -25410360 + AluSx SINE Alu 1 301 -11 466 335 140 9 chr11 125373497 125373718 -25409835 - MIR SINE MIR -12 250 1 477 222 230 0 chr11 125373871 125374006 -25409547 + MER5A DNA MER1_type 18 183 -6 9040 120 14 4 chr11 125374061 125375349 -25408204 + HSMAR2 DNA Mariner 1 1301 -1 1745 195 3 0 chr11 125375583 125375880 -25407673 + AluJo SINE Alu 1 298 -14 292 255 61 31 chr11 125376025 125376123 -25407430 + MLT1J2 LTR MaLR 69 169 -281 389 264 132 36 chr11 125376160 125376327 -25407226 + MLT1J2 LTR MaLR 268 450 0 501 295 7 7 chr11 125377723 125377862 -25405691 + MIR SINE MIR 17 155 -107 220 206 14 27 chr11 125377885 125377958 -25405595 + (TTTA)n Simple_repeat Simple_repeat 3 74 0 940 163 0 0 chr11 125377977 125378118 -25405435 - AluJo SINE Alu -171 141 1 439 292 8 23 chr11 125378250 125378380 -25405173 - MER5A DNA MER1_type -2 187 60 296 226 16 40 chr11 125378502 125378626 -25404927 + (ATGGTG)n Simple_repeat Simple_repeat 3 123 0 2257 167 17 0 chr11 125379790 125380149 -25403404 - MLT1A1 LTR MaLR 0 365 1 366 232 188 0 chr11 125380429 125380541 -25403012 - MER94 DNA DNA -1 133 1 285 51 0 0 chr11 125380633 125380672 -25402881 + (TG)n Simple_repeat Simple_repeat 2 40 0 336 241 109 29 chr11 125380680 125380817 -25402736 - MIR SINE MIR -59 203 56 781 211 151 107 chr11 125381050 125381078 -25402475 - MLT1C LTR MaLR -41 426 401 1481 173 88 22 chr11 125381078 125381350 -25402203 + AluJo SINE Alu 1 290 -22 781 211 151 107 chr11 125381350 125381724 -25401829 - MLT1C LTR MaLR -66 401 6 205 284 81 0 chr11 125382107 125382181 -25401372 + MIR SINE MIR 68 147 -61 1030 113 3 29 chr11 125382216 125382526 -25401027 + (GGAA)n Simple_repeat Simple_repeat 4 303 0 22 35 0 0 chr11 125382870 125382899 -25400654 + AT_rich Low_complexity Low_complexity 1 29 0 276 132 0 0 chr11 125383237 125383264 -25400289 + (A)n Simple_repeat Simple_repeat 1 27 -26 1950 100 4 0 chr11 125383264 125383515 -25400038 + AluSx SINE Alu 6 257 -55 276 132 0 0 chr11 125383515 125383540 -25400013 + (A)n Simple_repeat Simple_repeat 26 53 0 230 343 0 0 chr11 125386486 125386559 -25396994 + MIR SINE MIR 189 261 -1 330 269 13 0 chr11 125386560 125386638 -25396915 + L2 LINE L2 3233 3311 -2 826 356 74 37 chr11 125386873 125387656 -25395897 - L2 LINE L2 -337 2977 2166 349 200 46 85 chr11 125387983 125388113 -25395440 + MLT1L LTR MaLR 491 615 0 237 263 38 12 chr11 125388306 125388386 -25395167 - MLT1L LTR MaLR -327 288 207 314 263 53 44 chr11 125388753 125388867 -25394686 - MLT1J1 LTR MaLR -22 424 310 225 0 0 0 chr11 125389099 125389124 -25394429 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 650 191 217 25 chr11 125390561 125390893 -25392660 + MER31B LTR ERV1 1 465 -1 218 211 19 0 chr11 125391283 125391335 -25392218 + (TGGA)n Simple_repeat Simple_repeat 3 55 0 3517 116 9 30 chr11 125391555 125392079 -25391474 - L1PA16 LINE L1 -1 6165 5653 1984 172 0 6 chr11 125392238 125392552 -25391001 - AluSx SINE Alu 0 312 1 267 31 0 0 chr11 125392820 125392852 -25390701 + (GGGAA)n Simple_repeat Simple_repeat 2 33 0 672 340 89 24 chr11 125393714 125394467 -25389086 - L2 LINE L2 -468 2846 2045 214 322 29 23 chr11 125394871 125395042 -25388511 + (AGGTG)n Simple_repeat Simple_repeat 1 172 0 * 258 297 28 44 chr11 125394953 125395135 -25388418 + (GGGTG)n Simple_repeat Simple_repeat 1 179 0 1942 160 3 0 chr11 125395579 125395867 -25387686 + AluJb SINE Alu 1 289 -23 180 0 0 0 chr11 125395871 125395891 -25387662 + (TG)n Simple_repeat Simple_repeat 2 21 0 314 276 103 19 chr11 125396059 125396210 -25387343 + MIR SINE MIR 53 216 -46 230 303 15 0 chr11 125396210 125396276 -25387277 - MER5A DNA MER1_type 0 189 123 343 333 54 7 chr11 125396298 125396445 -25387108 - LTR33 LTR ERVL -321 200 47 214 284 68 0 chr11 125396879 125396967 -25386586 + L2 LINE L2 3160 3253 -60 482 218 269 20 chr11 125397174 125397371 -25386182 + MIR SINE MIR 15 260 -2 222 333 91 0 chr11 125397380 125397479 -25386074 + L2 LINE L2 3155 3262 -10 213 259 37 0 chr11 125398782 125398836 -25384717 + (CATG)n Simple_repeat Simple_repeat 3 58 0 299 301 88 9 chr11 125399001 125399114 -25384439 + MIR SINE MIR 28 149 -113 429 280 170 6 chr11 125400270 125400452 -25383101 + MIR SINE MIR 23 234 -28 460 265 59 12 chr11 125401087 125401257 -25382296 - MIR3 SINE MIR -29 179 2 2188 126 0 13 chr11 125401640 125401949 -25381604 + AluSx SINE Alu 1 305 -7 193 361 28 0 chr11 125402415 125402487 -25381066 + L2 LINE L2 3193 3266 -6 7905 144 120 22 chr11 125403268 125404834 -25378719 - pTR5 LTR ERV1 0 2438 375 573 252 7 7 chr11 125405130 125405269 -25378284 - MER5A DNA MER1_type 0 189 51 2092 253 74 10 chr11 125405284 125405770 -25377783 + MLT1F LTR MaLR 26 542 0 258 178 0 0 chr11 125405770 125405815 -25377738 - MER5A DNA MER1_type -138 51 7 184 351 13 0 chr11 125405821 125405898 -25377655 + L2 LINE L2 3195 3272 0 2060 143 135 8 chr11 125406002 125406381 -25377172 - MSTA LTR MaLR 0 428 2 842 298 84 34 chr11 125407846 125408430 -25375123 + L2 LINE L2 2325 2937 -377 270 310 133 10 chr11 125408474 125408677 -25374876 + L2 LINE L2 2988 3215 -98 1952 127 79 20 chr11 125408819 125409173 -25374380 - THE1C LTR MaLR 0 375 1 4603 187 66 50 chr11 125409491 125409716 -25373837 - Charlie1 DNA MER1_type 0 2761 2541 2084 116 10 7 chr11 125409716 125410010 -25373543 - AluSg SINE Alu -15 295 1 4603 187 66 50 chr11 125410010 125410455 -25373098 - Charlie1 DNA MER1_type -220 2541 2105 2313 103 0 10 chr11 125410455 125410755 -25372798 + AluSx SINE Alu 1 297 -15 4603 187 66 50 chr11 125410755 125411071 -25372482 - Charlie1 DNA MER1_type -656 2105 1750 2136 115 7 7 chr11 125411071 125411367 -25372186 + AluSq SINE Alu 1 296 -17 4603 187 66 50 chr11 125411367 125411544 -25372009 - Charlie1 DNA MER1_type -1011 1750 1577 45366 40 2 1 chr11 125411569 125417707 -25365846 + L1PA7 LINE L1 1 6141 -13 357 238 143 16 chr11 125417815 125417941 -25365612 + MER96 DNA MER1_type? 12 153 -22 214 262 221 16 chr11 125418290 125418412 -25365141 - MIR3 SINE MIR -41 167 21 207 0 0 0 chr11 125418680 125418703 -25364850 + (TC)n Simple_repeat Simple_repeat 2 24 0 584 75 43 0 chr11 125419312 125419406 -25364147 - L1PB2 LINE L1 0 6151 6054 196 269 77 26 chr11 125419567 125419645 -25363908 + L2 LINE L2 2892 2973 -341 2577 106 80 5 chr11 125419645 125420043 -25363510 - MSTA LTR MaLR 0 428 1 331 241 24 12 chr11 125420071 125420154 -25363399 - L2 LINE L2 -3 3269 3186 183 333 130 10 chr11 125420317 125420524 -25363029 - L2 LINE L2 -337 2977 2746 305 296 74 9 chr11 125420702 125420810 -25362743 + L2 LINE L2 3157 3271 -1 326 355 25 39 chr11 125420901 125421341 -25362212 + L2 LINE L2 2625 3060 -212 247 311 23 11 chr11 125422439 125422548 -25361005 - MIR SINE MIR -83 125 40 1660 180 12 83 chr11 125423281 125423692 -25359861 + MLT1B LTR MaLR 1 382 -8 484 284 62 6 chr11 125423762 125423924 -25359629 + MIR SINE MIR 20 190 -72 519 242 70 32 chr11 125425151 125425337 -25358216 - MIR SINE MIR -43 219 27 22 0 0 0 chr11 125425672 125425694 -25357859 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 125426616 125426637 -25356916 + AT_rich Low_complexity Low_complexity 1 21 0 732 142 8 30 chr11 125426649 125426783 -25356770 + FLAM_C SINE Alu 1 131 -2 2226 120 0 0 chr11 125426947 125427256 -25356297 + AluSg SINE Alu 1 309 -1 417 242 81 0 chr11 125428387 125428511 -25355042 + L1MC5 LINE L1 7779 7912 -49 272 262 87 110 chr11 125428542 125428566 -25354987 + L2 LINE L2 2750 2773 -540 189 0 0 0 chr11 125428566 125428587 -25354966 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 272 262 87 110 chr11 125428587 125429130 -25354423 + L2 LINE L2 2773 3310 -3 267 31 0 0 chr11 125429797 125429829 -25353724 + (TG)n Simple_repeat Simple_repeat 2 33 0 372 43 0 0 chr11 125430776 125430822 -25352731 + MADE1 DNA Mariner 34 79 -1 1555 129 0 0 chr11 125431511 125431728 -25351825 - AluSg/x SINE Alu -12 298 82 840 225 53 11 chr11 125433291 125433554 -25349999 + L1ME3A LINE L1 5240 5510 -652 466 191 106 111 chr11 125433564 125433654 -25349899 + L1ME3A LINE L1 5765 5854 -316 2130 126 0 0 chr11 125433654 125433947 -25349606 + AluSx SINE Alu 1 293 -19 466 191 106 111 chr11 125433947 125434055 -25349498 + L1ME3A LINE L1 5854 5962 -208 1509 115 79 115 chr11 125435113 125435418 -25348135 + AluJo SINE Alu 1 294 -18 579 260 23 23 chr11 125438923 125439100 -25344453 + MER5B DNA MER1_type 1 177 -1 267 289 47 54 chr11 125439288 125439437 -25344116 + MER5B DNA MER1_type 19 166 -12 1692 175 21 0 chr11 125439439 125439719 -25343834 + AluJo SINE Alu 1 286 -26 241 98 20 20 chr11 125439720 125439771 -25343782 + (AAATG)n Simple_repeat Simple_repeat 3 53 0 952 155 54 0 chr11 125439804 125439972 -25343581 + MER5A DNA MER1_type 1 177 -12 775 173 0 23 chr11 125440277 125440410 -25343143 - FLAM_C SINE Alu -2 131 2 192 289 40 0 chr11 125442507 125442583 -25340970 - MIR SINE MIR -1 261 183 207 0 0 0 chr11 125442783 125442806 -25340747 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2361 50 0 53 chr11 125443237 125443540 -25340013 + AluY SINE Alu 1 287 -24 630 110 0 0 chr11 125443734 125443816 -25339737 - AluJb SINE Alu -23 289 208 1583 134 138 8 chr11 125443736 125443990 -25339563 - AluJo SINE Alu -15 287 1 258 207 17 17 chr11 125444322 125444380 -25339173 + MIR SINE MIR 87 144 -64 296 237 79 0 chr11 125444581 125444657 -25338896 + MIR SINE MIR 119 200 -62 1090 213 58 0 chr11 125445090 125445297 -25338256 + MER20 DNA MER1_type 1 219 0 396 292 18 9 chr11 125445372 125445485 -25338068 - MIR3 SINE MIR -32 176 63 945 280 137 47 chr11 125445575 125446112 -25337441 - L2 LINE L2 -36 3277 2695 607 153 0 0 chr11 125448220 125448305 -25335248 + FLAM_A SINE Alu 32 116 -26 201 39 0 0 chr11 125448309 125448335 -25335218 + (CA)n Simple_repeat Simple_repeat 2 27 0 638 202 31 8 chr11 125448402 125448531 -25335022 + Charlie5 DNA MER1_type 1 132 -2480 1341 170 37 71 chr11 125448535 125448829 -25334724 + L1MD2 LINE L1 6020 6303 -56 4458 169 57 48 chr11 125448843 125449429 -25334124 + Charlie5 DNA MER1_type 116 718 -1906 2520 76 0 0 chr11 125449429 125449733 -25333820 - AluSq SINE Alu -9 304 1 4458 169 57 48 chr11 125449733 125450157 -25333396 + Charlie5 DNA MER1_type 718 1136 -1488 2731 166 88 56 chr11 125450441 125450723 -25332830 + Charlie5 DNA MER1_type 1114 1386 -1238 2271 95 14 0 chr11 125450723 125451017 -25332536 + AluSg SINE Alu 1 298 -12 2731 166 88 56 chr11 125451017 125451391 -25332162 + Charlie5 DNA MER1_type 1386 1791 -833 225 0 0 0 chr11 125451392 125451417 -25332136 + (TG)n Simple_repeat Simple_repeat 2 26 0 420 141 128 13 chr11 125451445 125451523 -25332030 + MLT1B LTR MaLR 1 87 -303 14193 113 39 71 chr11 125451523 125452151 -25331402 + Tigger1 DNA MER2_type 1 648 -1770 2212 71 7 0 chr11 125452151 125452432 -25331121 - L1PA13 LINE L1 -2 6161 5879 14193 113 39 71 chr11 125452432 125452524 -25331029 + Tigger1 DNA MER2_type 648 741 -1677 2147 148 0 0 chr11 125452524 125452834 -25330719 - AluSx SINE Alu -1 311 2 14193 113 39 71 chr11 125452834 125453332 -25330221 + Tigger1 DNA MER2_type 741 1253 -1165 2170 121 0 0 chr11 125453332 125453621 -25329932 + AluSx SINE Alu 1 289 -23 14193 113 39 71 chr11 125453621 125453750 -25329803 + Tigger1 DNA MER2_type 1253 1385 -1033 1207 141 72 156 chr11 125453750 125454070 -25329483 - AluJo SINE Alu -9 293 1 14193 113 39 71 chr11 125454070 125455214 -25328339 + Tigger1 DNA MER2_type 1385 2415 -3 833 194 42 31 chr11 125455223 125455414 -25328139 + MLT1B LTR MaLR 92 284 -106 405 312 107 15 chr11 125455414 125455619 -25327934 + L3 LINE CR1 1134 1357 -220 388 358 88 10 chr11 125455725 125455918 -25327635 + L3 LINE CR1 1365 1572 -5 21 57 0 0 chr11 125456717 125456752 -25326801 + AT_rich Low_complexity Low_complexity 1 35 0 2004 107 50 7 chr11 125457033 125457313 -25326240 + AluSq SINE Alu 1 292 -21 1978 116 0 69 chr11 125458022 125458341 -25325212 + AluJo SINE Alu 1 297 -15 202 314 0 0 chr11 125458511 125458562 -25324991 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 195 167 0 0 chr11 125459822 125459864 -25323689 + A-rich Low_complexity Low_complexity 1 42 0 336 217 51 102 chr11 125460183 125460340 -25323213 - L3 LINE CR1 -3 1574 1426 1822 162 0 17 chr11 125460409 125460706 -25322847 - AluJb SINE Alu -16 296 5 457 299 110 24 chr11 125460876 125461100 -25322453 + L2 LINE L2 1649 1899 -1415 207 0 0 0 chr11 125461100 125461123 -25322430 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 457 299 110 24 chr11 125461123 125461152 -25322401 + L2 LINE L2 1899 1924 -1390 3969 139 77 19 chr11 125461169 125461656 -25321897 - Tigger3(Golem) DNA MER2_type 0 3029 2572 2250 100 14 0 chr11 125461656 125461947 -25321606 - AluSx SINE Alu -17 295 1 3969 139 77 19 chr11 125461947 125462023 -25321530 - Tigger3(Golem) DNA MER2_type -457 2572 2502 7179 58 18 1 chr11 125462023 125463673 -25319880 - L1PA8A LINE L1 -7 6124 4460 3969 139 77 19 chr11 125463673 125463893 -25319660 - Tigger3(Golem) DNA MER2_type -527 2502 21 311 299 140 30 chr11 125463916 125464081 -25319472 + L2 LINE L2 1986 2131 -1183 1122 159 35 66 chr11 125464081 125464307 -25319246 + MER20 DNA MER1_type 1 219 0 311 299 140 30 chr11 125464307 125464412 -25319141 + L2 LINE L2 2131 2286 -1028 627 248 40 86 chr11 125464429 125464651 -25318902 + MLT1J2 LTR MaLR 18 229 -217 431 242 22 0 chr11 125464758 125464849 -25318704 - MER5A DNA MER1_type -77 112 20 1566 202 109 30 chr11 125464851 125465218 -25318335 + LTR40b LTR ERVL 3 398 -64 1705 175 31 3 chr11 125465220 125465512 -25318041 + AluJb SINE Alu 3 302 -10 2573 55 3 16 chr11 125465518 125465829 -25317724 + AluY SINE Alu 1 307 -4 31 0 0 0 chr11 125465829 125465860 -25317693 + AT_rich Low_complexity Low_complexity 1 31 0 2180 118 3 0 chr11 125465866 125466155 -25317398 + AluSx SINE Alu 1 290 -22 372 253 0 0 chr11 125466164 125466243 -25317310 + LTR40a LTR ERVL 441 519 0 467 308 122 50 chr11 125466407 125467053 -25316500 + L2 LINE L2 2285 2977 -337 468 310 186 7 chr11 125467322 125467596 -25315957 - L3 LINE CR1 -281 1296 974 357 172 0 16 chr11 125467684 125467748 -25315805 - AluS SINE Alu -245 63 1 321 153 17 0 chr11 125468318 125468377 -25315176 + L1MA5A LINE L1 6234 6293 -4 2483 88 0 0 chr11 125469211 125469519 -25314034 - AluSx SINE Alu -4 308 1 23 0 0 0 chr11 125469519 125469542 -25314011 + AT_rich Low_complexity Low_complexity 1 23 0 2266 105 0 10 chr11 125469783 125470089 -25313464 - AluSx SINE Alu -9 303 1 1187 123 0 6 chr11 125470483 125470653 -25312900 - AluSg/x SINE Alu -14 298 130 2140 62 35 48 chr11 125471504 125471794 -25311759 + AluSx SINE Alu 1 286 -26 212 83 36 119 chr11 125472993 125473077 -25310476 + (CATTA)n Simple_repeat Simple_repeat 4 80 0 1054 191 99 53 chr11 125473378 125473681 -25309872 + MER2 DNA MER2_type 1 317 -28 252 254 15 45 chr11 125474046 125474113 -25309440 - L2 LINE L2 -17 3296 3232 598 222 13 52 chr11 125474158 125474311 -25309242 - MER69A DNA AcHobo -1 176 30 2902 150 18 37 chr11 125474396 125474909 -25308644 + LTR54 LTR ERV1 8 510 0 524 235 24 18 chr11 125475544 125475710 -25307843 + L1MC5 LINE L1 7763 7929 -32 3314 197 30 77 chr11 125475854 125476871 -25306682 + LTR5 LTR ERVK 1 969 0 269 253 46 23 chr11 125477076 125477163 -25306390 + MIR SINE MIR 20 108 -154 180 273 23 0 chr11 125477204 125477248 -25306305 + L2 LINE L2 3210 3254 -18 24 32 0 0 chr11 125477423 125477454 -25306099 + AT_rich Low_complexity Low_complexity 1 31 0 232 229 30 61 chr11 125477460 125477591 -25305962 - L1ME4a LINE L1 -5 6116 5990 249 108 0 0 chr11 125477597 125477634 -25305919 + (CA)n Simple_repeat Simple_repeat 2 38 0 2075 127 0 10 chr11 125477655 125477954 -25305599 - AluSx SINE Alu -16 296 1 334 235 17 17 chr11 125477963 125478078 -25305475 - L1ME4a LINE L1 -209 5912 5798 471 260 83 6 chr11 125478092 125478261 -25305292 - L1ME4a LINE L1 -401 5720 5539 451 219 188 0 chr11 125479902 125479998 -25303555 + MER81 DNA DNA 1 114 0 1604 130 0 16 chr11 125480119 125480366 -25303187 - AluJo SINE Alu -3 309 67 298 180 0 0 chr11 125481390 125481440 -25302113 - L2 LINE L2 0 3313 3264 2214 99 20 0 chr11 125481502 125481794 -25301759 - AluSx SINE Alu -14 298 1 303 349 26 13 chr11 125482024 125482176 -25301377 - L2 LINE L2 -413 2901 2748 310 256 143 23 chr11 125482375 125482508 -25301045 - MIR SINE MIR -108 154 6 1834 94 143 0 chr11 125482568 125482834 -25300719 + AluSx SINE Alu 1 304 -8 853 150 8 0 chr11 125484751 125484878 -25298675 - AluJo SINE Alu -176 136 9 2262 90 3 17 chr11 125485094 125485394 -25298159 + AluSc SINE Alu 1 296 -13 2496 68 3 0 chr11 125485394 125485701 -25297852 + AluY SINE Alu 1 308 -3 985 178 0 12 chr11 125485823 125485992 -25297561 - FRAM SINE Alu -10 166 1 2217 87 14 0 chr11 125487045 125487332 -25296221 - AluSx SINE Alu -21 291 1 24 0 0 0 chr11 125487629 125487653 -25295900 + AT_rich Low_complexity Low_complexity 1 24 0 1075 158 12 0 chr11 125490631 125490796 -25292757 + AluJb SINE Alu 137 303 -9 485 258 39 56 chr11 125490808 125490986 -25292567 + MER5B DNA MER1_type 2 176 -2 2505 68 0 10 chr11 125491022 125491330 -25292223 + AluSc SINE Alu 1 305 -4 1101 237 45 57 chr11 125491335 125491514 -25292039 + L1ME3A LINE L1 3166 3346 -2800 2354 82 0 3 chr11 125491514 125491808 -25291745 + AluSc SINE Alu 3 295 -14 1101 237 45 57 chr11 125491808 125492206 -25291347 + L1ME3A LINE L1 3346 3736 -2410 1106 220 124 31 chr11 125492221 125492639 -25290914 + L1ME3A LINE L1 3786 4242 -1904 1134 254 163 40 chr11 125492649 125492959 -25290594 + L1ME3A LINE L1 4316 4586 -1584 1857 153 10 3 chr11 125492959 125493254 -25290299 + AluJb SINE Alu 1 297 -15 1134 254 163 40 chr11 125493254 125493366 -25290187 + L1ME3A LINE L1 4586 4683 -1487 2211 114 7 3 chr11 125493366 125493672 -25289881 + AluSx SINE Alu 1 307 -5 1134 254 163 40 chr11 125493672 125493846 -25289707 + L1ME3A LINE L1 4683 4834 -1336 2269 96 0 0 chr11 125493846 125494138 -25289415 + AluSx SINE Alu 1 292 -20 1134 254 163 40 chr11 125494138 125494849 -25288704 + L1ME3A LINE L1 4834 5837 -333 227 73 49 24 chr11 125495172 125495204 -25288349 - MER58 DNA MER1_type -106 109 74 2136 139 0 0 chr11 125495204 125495507 -25288046 + AluJo SINE Alu 1 303 -9 313 299 0 23 chr11 125495809 125495896 -25287657 + MIR SINE MIR 18 102 -160 1307 211 35 4 chr11 125496137 125496365 -25287188 - MER8 DNA MER2_type -3 236 2 234 0 0 0 chr11 125496866 125496892 -25286661 + (T)n Simple_repeat Simple_repeat 1 26 0 1857 151 16 13 chr11 125496932 125497236 -25286317 + AluSx SINE Alu 1 305 -7 492 99 297 0 chr11 125498560 125498677 -25284876 + MER30 DNA MER1_type 1 171 -59 2533 48 0 0 chr11 125498806 125499100 -25284453 - AluY SINE Alu -17 294 1 1653 171 66 0 chr11 125499100 125499386 -25284167 - AluJb SINE Alu -7 305 1 2099 129 0 3 chr11 125499637 125499940 -25283613 - AluSx SINE Alu -10 302 1 753 213 35 17 chr11 125500549 125500723 -25282830 - MER5B DNA MER1_type -1 177 1 565 281 54 6 chr11 125500779 125500946 -25282607 - MER5B DNA MER1_type 0 178 4 215 310 177 0 chr11 125501567 125501680 -25281873 - L2 LINE L2 -3 3310 3178 241 333 118 7 chr11 125502209 125502344 -25281209 + MIR3 SINE MIR 56 205 -3 2161 138 0 0 chr11 125504056 125504353 -25279200 - AluJo SINE Alu -15 297 1 1732 146 19 49 chr11 125504727 125505035 -25278518 - AluJo SINE Alu -13 299 1 975 176 75 0 chr11 125505036 125505195 -25278358 - FAM SINE Alu -4 171 1 2311 94 0 3 chr11 125505873 125506171 -25277382 - AluSx SINE Alu -15 297 1 1215 159 4 68 chr11 125508186 125508438 -25275115 - MER46A DNA MER2_type 0 236 1 312 189 0 0 chr11 125508467 125508520 -25275033 + L2 LINE L2 3261 3313 0 2335 98 3 10 chr11 125508547 125508854 -25274699 + AluSx SINE Alu 1 305 -7 2212 110 3 0 chr11 125509478 125509769 -25273784 - AluSx SINE Alu -18 294 3 229 325 111 0 chr11 125509912 125510029 -25273524 + MIR SINE MIR 25 154 -108 1992 133 0 0 chr11 125510219 125510505 -25273048 + AluSx SINE Alu 18 303 -9 25 75 0 0 chr11 125510944 125510997 -25272556 + AT_rich Low_complexity Low_complexity 1 53 0 185 319 0 28 chr11 125511472 125511544 -25272009 + MIR3 SINE MIR 118 187 -21 1958 144 0 7 chr11 125513563 125513847 -25269706 + AluSx SINE Alu 1 282 -30 424 351 48 9 chr11 125514280 125514508 -25269045 - MIR SINE MIR -13 249 13 2182 91 7 0 chr11 125515031 125515339 -25268214 + AluSc SINE Alu 2 311 0 26 93 0 0 chr11 125515546 125515621 -25267932 + AT_rich Low_complexity Low_complexity 1 75 0 2343 63 26 7 chr11 125516935 125517238 -25266315 - AluY SINE Alu -1 310 2 1968 151 0 19 chr11 125517371 125517689 -25265864 + AluJb SINE Alu 1 312 0 2244 131 0 0 chr11 125517901 125518207 -25265346 - AluSx SINE Alu -6 306 1 251 234 81 86 chr11 125518211 125518420 -25265133 - L1ME4a LINE L1 0 6121 5914 1816 100 8 4 chr11 125518518 125518769 -25264784 - AluSq SINE Alu -17 296 45 878 68 83 30 chr11 125518787 125518919 -25264634 - MER85 DNA T2_type 0 139 1 420 181 48 0 chr11 125519188 125519271 -25264282 + MER94 DNA DNA 7 93 -41 2150 104 3 3 chr11 125520964 125521252 -25262301 + AluSg SINE Alu 1 288 -22 369 0 0 0 chr11 125521253 125521294 -25262259 + (GA)n Simple_repeat Simple_repeat 2 42 0 667 220 0 0 chr11 125521295 125521404 -25262149 - FLAM_A SINE Alu -32 110 2 21 0 0 0 chr11 125521420 125521441 -25262112 + AT_rich Low_complexity Low_complexity 1 21 0 195 204 102 0 chr11 125522158 125522207 -25261346 + MIR SINE MIR 68 121 -87 3025 202 74 65 chr11 125522533 125523124 -25260429 + L1ME1 LINE L1 3941 4525 -1621 2065 125 3 3 chr11 125523124 125523411 -25260142 - AluSx SINE Alu -25 287 1 3025 202 74 65 chr11 125523411 125523441 -25260112 + L1ME1 LINE L1 4525 4553 -1593 2412 79 3 3 chr11 125523441 125523744 -25259809 + AluSp SINE Alu 1 303 -10 3025 202 74 65 chr11 125523744 125524066 -25259487 + L1ME1 LINE L1 4553 4894 -1252 2609 234 42 12 chr11 125524064 125524738 -25258815 + L1ME1 LINE L1 5410 6103 -63 * 2329 95 0 0 chr11 125524806 125525102 -25258451 + AluSg SINE Alu 13 308 -2 1504 147 155 0 chr11 125525134 125525399 -25258154 - AluJb SINE Alu -6 306 1 2512 69 3 0 chr11 125525430 125525733 -25257820 + AluSp SINE Alu 1 304 -9 180 282 204 56 chr11 125525814 125525956 -25257597 + MER5A DNA MER1_type 9 171 -18 21 82 0 0 chr11 125527513 125527562 -25255991 + AT_rich Low_complexity Low_complexity 1 49 0 1753 169 14 3 chr11 125528342 125528637 -25254916 + AluJo SINE Alu 5 302 -10 940 184 107 86 chr11 125528683 125529102 -25254451 + L1MC5 LINE L1 7272 7699 -262 345 331 66 15 chr11 125529444 125529580 -25253973 - MIR SINE MIR -112 150 8 423 307 71 0 chr11 125529881 125530008 -25253545 - L2 LINE L2 -14 3258 3123 2250 123 3 0 chr11 125530885 125531195 -25252358 - AluSx SINE Alu -1 311 1 1136 153 0 16 chr11 125531546 125531729 -25251824 - AluJo SINE Alu -4 308 129 247 245 154 14 chr11 125533213 125533356 -25250197 + L1ME3A LINE L1 5599 5761 -360 851 146 0 0 chr11 125533381 125533504 -25250049 - AluJo SINE Alu -189 123 1 296 254 75 35 chr11 125533565 125533738 -25249815 + L1ME3A LINE L1 5769 5948 -222 2279 91 16 0 chr11 125534585 125534893 -25248660 + AluSp SINE Alu 1 313 0 696 257 123 68 chr11 125535368 125536117 -25247436 + L2 LINE L2 2491 3308 -5 806 269 162 27 chr11 125537076 125537642 -25245911 + L2 LINE L2 2645 3281 -32 252 229 255 25 chr11 125537643 125537800 -25245753 - L2 LINE L2 -817 2497 2305 437 261 22 22 chr11 125537802 125537940 -25245613 + L2 LINE L2 2172 2309 -1005 200 216 0 0 chr11 125538049 125538086 -25245467 + L2 LINE L2 2323 2359 -955 1797 121 0 0 chr11 125538093 125538332 -25245221 + AluSx SINE Alu 5 243 -69 31 0 0 0 chr11 125538352 125538383 -25245170 + AT_rich Low_complexity Low_complexity 1 31 0 1003 82 52 0 chr11 125538394 125538528 -25245025 + AluSq/x SINE Alu 2 142 -170 1970 118 40 0 chr11 125538529 125538825 -25244728 + AluSg SINE Alu 1 308 -2 371 350 22 50 chr11 125538854 125539131 -25244422 + L2 LINE L2 2388 2656 -658 1120 279 53 42 chr11 125541009 125541090 -25242463 + L1MB3 LINE L1 3723 3802 -2344 2465 71 0 0 chr11 125541090 125541386 -25242167 + AluY SINE Alu 1 296 -15 1120 279 53 42 chr11 125541386 125541739 -25241814 + L1MB3 LINE L1 3802 4167 -1979 2107 118 0 4 chr11 125541739 125542019 -25241534 + AluSx SINE Alu 5 283 -29 1120 279 53 42 chr11 125542019 125542109 -25241444 + L1MB3 LINE L1 4167 4254 -1892 268 143 41 0 chr11 125542109 125542158 -25241395 + MER66B LTR ERV1 295 345 -141 2180 128 3 0 chr11 125542176 125542488 -25241065 + AluSp SINE Alu 1 313 0 3447 190 76 42 chr11 125542513 125542945 -25240608 + L1MB3 LINE L1 4741 5157 -1026 2109 101 13 29 chr11 125542945 125543251 -25240302 + AluSg SINE Alu 1 301 -9 3447 190 76 42 chr11 125543251 125543609 -25239944 + L1MB3 LINE L1 5157 5501 -682 1806 149 9 47 chr11 125543609 125543931 -25239622 + AluJb SINE Alu 1 310 -2 3447 190 76 42 chr11 125543931 125543943 -25239610 + L1MB3 LINE L1 5501 5511 -672 1943 142 10 6 chr11 125543943 125544254 -25239299 + AluSx SINE Alu 1 312 0 3447 190 76 42 chr11 125544254 125544373 -25239180 + L1MB3 LINE L1 5511 5624 -559 1743 175 7 3 chr11 125544373 125544659 -25238894 - AluJb SINE Alu -23 289 3 3447 190 76 42 chr11 125544659 125545102 -25238451 + L1MB3 LINE L1 5624 6156 -27 1175 141 11 12 chr11 125545119 125545398 -25238155 + L1MB2 LINE L1 5814 6126 -45 2164 110 0 13 chr11 125545495 125545794 -25237759 + AluSx SINE Alu 1 295 -17 262 202 12 83 chr11 125545838 125545922 -25237631 + L1MC5 LINE L1 7151 7228 -733 498 243 64 91 chr11 125546094 125546514 -25237039 + L1MC5 LINE L1 7342 7750 -211 * 537 177 1 10 chr11 125546485 125546615 -25236938 + L1M4 LINE L1 5586 5717 -451 8608 198 72 54 chr11 125546616 125548743 -25234810 + MER21-int LTR ERV1 919 3085 -1106 676 191 56 8 chr11 125548741 125548867 -25234686 - MER21-int LTR ERV1 -3013 1178 1047 * 798 268 58 28 chr11 125548916 125549278 -25234275 + L1ME3A LINE L1 5513 5885 -285 382 250 0 0 chr11 125549284 125549372 -25234181 + L1ME LINE L1 5670 5757 -405 2180 256 146 33 chr11 125549396 125550304 -25233249 + L2 LINE L2 2019 3123 -190 1957 104 42 3 chr11 125550304 125550592 -25232961 + AluSx SINE Alu 1 299 -13 2180 256 146 33 chr11 125550592 125550808 -25232745 + L2 LINE L2 3123 3313 0 2385 70 0 0 chr11 125550821 125551119 -25232434 - AluY SINE Alu -13 298 1 259 190 17 17 chr11 125551129 125551187 -25232366 + MIR SINE MIR 205 262 0 1582 123 48 52 chr11 125551810 125552119 -25231434 + AluJb SINE Alu 1 308 -4 607 239 111 74 chr11 125552155 125552383 -25231170 - L1MC5 LINE L1 -33 7928 7710 2172 109 0 13 chr11 125552383 125552695 -25230858 + AluSx SINE Alu 1 308 -4 607 239 111 74 chr11 125552695 125552951 -25230602 - L1MC5 LINE L1 -251 7710 7426 1813 99 0 8 chr11 125553241 125553504 -25230049 - AluSg SINE Alu -49 261 1 2092 98 20 3 chr11 125554434 125554730 -25228823 + AluSp SINE Alu 1 301 -12 539 229 112 50 chr11 125555225 125555404 -25228149 - MIR SINE MIR 0 262 73 1112 123 0 0 chr11 125555499 125555691 -25227862 - AluSg/x SINE Alu 0 311 120 2341 220 100 35 chr11 125555823 125556501 -25227052 - HsTC2c DNA MER2_type -4 725 4 1793 159 0 17 chr11 125556663 125556965 -25226588 - AluSx SINE Alu -15 297 1 2027 124 10 0 chr11 125557402 125557708 -25225845 - AluSx SINE Alu -3 309 1 183 217 292 83 chr11 125557810 125557845 -25225708 - MIR SINE MIR 0 262 236 716 192 15 8 chr11 125557845 125557975 -25225578 - FLAM_A SINE Alu -2 131 1 183 217 292 83 chr11 125557975 125558059 -25225494 - MIR SINE MIR -26 236 118 634 146 29 0 chr11 125558145 125558248 -25225305 + U6 snRNA snRNA 1 106 -1 33 0 0 0 chr11 125558397 125558430 -25225123 + AT_rich Low_complexity Low_complexity 1 33 0 240 100 0 0 chr11 125559242 125559282 -25224271 + (A)n Simple_repeat Simple_repeat 1 40 0 1957 122 0 30 chr11 125559330 125559633 -25223920 + AluSg SINE Alu 1 294 -16 2071 86 3 23 chr11 125559637 125559940 -25223613 + AluY SINE Alu 1 297 -14 2228 96 0 0 chr11 125560866 125561159 -25222394 + AluSq SINE Alu 2 294 -19 217 359 33 45 chr11 125561164 125561409 -25222144 - L2 LINE L2 -474 2840 2599 4330 194 24 102 chr11 125561539 125562164 -25221389 + L1MB5 LINE L1 3841 4513 -1633 1870 145 7 0 chr11 125562164 125562460 -25221093 + AluJo SINE Alu 1 298 -14 2504 31 0 0 chr11 125562463 125562755 -25220798 + AluY SINE Alu 1 292 -19 2144 103 0 7 chr11 125562757 125563058 -25220495 + AluSx SINE Alu 2 300 -12 4330 194 24 102 chr11 125563058 125563121 -25220432 + L1MB5 LINE L1 4516 4582 -1564 2102 194 28 53 chr11 125563121 125563652 -25219901 - MLT2B1 LTR ERVL 0 520 3 4330 194 24 102 chr11 125563652 125563663 -25219890 + L1MB5 LINE L1 4582 4592 -1554 1280 193 87 25 chr11 125563663 125563938 -25219615 - AluJb SINE Alu -10 292 1 4330 194 24 102 chr11 125563938 125564059 -25219494 + L1MB5 LINE L1 4592 4721 -1425 370 111 19 0 chr11 125564059 125564113 -25219440 - U7 snRNA snRNA -8 55 1 4330 194 24 102 chr11 125564113 125564623 -25218930 + L1MB5 LINE L1 4721 5125 -1021 370 197 0 53 chr11 125564624 125564700 -25218853 + AluJb SINE Alu 120 191 -111 1949 130 20 0 chr11 125564815 125565115 -25218438 + AluSx SINE Alu 1 306 -6 4094 187 27 46 chr11 125565129 125566071 -25217482 + L1MB5 LINE L1 5182 6114 -60 1674 116 4 4 chr11 125566071 125566312 -25217241 - AluSq SINE Alu -18 295 55 4094 187 27 46 chr11 125566312 125566372 -25217181 + L1MB5 LINE L1 6114 6174 0 908 206 0 6 chr11 125566382 125566552 -25217001 + FAM SINE Alu 2 170 -5 465 158 0 0 chr11 125566589 125566671 -25216882 + GA-rich Low_complexity Low_complexity 2 83 0 1785 148 0 16 chr11 125567467 125567772 -25215781 + AluJo SINE Alu 13 312 0 1353 187 37 34 chr11 125567829 125567967 -25215586 + AluJb SINE Alu 1 137 -175 1949 111 24 7 chr11 125567967 125568265 -25215288 + AluSx SINE Alu 1 303 -9 1353 187 37 34 chr11 125568265 125568420 -25215133 + AluJb SINE Alu 137 295 -17 320 269 139 9 chr11 125568425 125568533 -25215020 + MIR SINE MIR 119 240 -22 2127 93 3 0 chr11 125568711 125569000 -25214553 + AluSp SINE Alu 15 304 -9 1748 158 0 0 chr11 125569061 125569334 -25214219 + AluJo SINE Alu 1 273 -39 461 238 59 0 chr11 125569909 125570010 -25213543 + MER63 DNA MER1_type 682 788 -273 271 203 68 0 chr11 125570057 125570116 -25213437 - MER5A DNA MER1_type -118 71 9 821 212 52 24 chr11 125570209 125570421 -25213132 - MER20 DNA MER1_type 0 219 2 194 328 55 16 chr11 125570561 125570689 -25212864 - L2 LINE L2 -1908 1406 1274 496 277 178 15 chr11 125570725 125570927 -25212626 + MIR SINE MIR 28 262 0 1984 59 0 4 chr11 125571064 125571318 -25212235 + AluY SINE Alu 44 296 -15 2365 63 0 3 chr11 125572680 125572980 -25210573 + AluSc SINE Alu 1 299 -10 1768 100 97 0 chr11 125572989 125573268 -25210285 + AluSx SINE Alu 1 306 -6 216 119 48 0 chr11 125574392 125574434 -25209119 + C-rich Low_complexity Low_complexity 4 47 0 1634 97 153 4 chr11 125575134 125575402 -25208151 - AluSx SINE Alu -4 308 1 1774 170 10 7 chr11 125576049 125576355 -25207198 - AluJo SINE Alu -5 307 1 1361 151 186 50 chr11 125576520 125576897 -25206656 - MSTA LTR MaLR 0 428 1 1865 98 29 67 chr11 125576913 125577229 -25206324 - AluSg SINE Alu -6 304 1 705 192 0 0 chr11 125577275 125577395 -25206158 + AluJb SINE Alu 14 133 -179 2651 75 3 25 chr11 125577406 125577768 -25205785 - THE1A LTR MaLR -1 354 1 10470 103 13 8 chr11 125577768 125578854 -25204699 - THE1A-int LTR MaLR 0 1580 484 2175 102 0 22 chr11 125578854 125579169 -25204384 - AluSc SINE Alu -1 308 1 10470 103 13 8 chr11 125579169 125579504 -25204049 - THE1A-int LTR MaLR -1096 484 152 1068 164 0 0 chr11 125579536 125579713 -25203840 + AluJb SINE Alu 128 304 -8 2108 83 55 3 chr11 125580289 125580578 -25202975 - AluSg SINE Alu -6 304 1 2271 84 3 7 chr11 125581185 125581495 -25202058 + AluSc SINE Alu 1 309 0 867 195 26 102 chr11 125581516 125581664 -25201889 + MER8 DNA MER2_type 14 172 -67 180 0 0 0 chr11 125581664 125581684 -25201869 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 900 196 0 0 chr11 125581685 125581833 -25201720 - FRAM SINE Alu -18 148 1 867 195 26 102 chr11 125581833 125581908 -25201645 + MER8 DNA MER2_type 171 222 -17 1542 180 3 7 chr11 125581948 125582232 -25201321 + AluJo SINE Alu 12 294 -18 1939 107 3 35 chr11 125582289 125582599 -25200954 - AluSq SINE Alu -13 300 1 638 226 0 0 chr11 125582612 125582749 -25200804 + FRAM SINE Alu 35 171 -5 627 250 51 51 chr11 125582762 125582938 -25200615 - MIR SINE MIR 0 262 87 1845 136 0 0 chr11 125583089 125583361 -25200192 + AluSx SINE Alu 6 277 -35 700 161 9 0 chr11 125583433 125583545 -25200008 + MER57A LTR ERV1 9 121 -282 27 0 0 0 chr11 125583583 125583610 -25199943 + GC_rich Low_complexity Low_complexity 1 27 0 1863 135 0 3 chr11 125583728 125584010 -25199543 - AluSg SINE Alu -29 281 1 490 198 0 47 chr11 125584092 125584198 -25199355 + AluJ/FLAM SINE Alu 1 101 -211 1997 104 6 61 chr11 125584225 125584553 -25199000 - AluSp SINE Alu -3 310 1 1221 225 70 47 chr11 125584600 125584696 -25198857 + MSTD LTR MaLR 1 93 -303 1698 121 19 11 chr11 125584696 125584960 -25198593 + AluSx SINE Alu 1 266 -46 1221 225 70 47 chr11 125584960 125585250 -25198303 + MSTD LTR MaLR 93 396 0 22 56 0 0 chr11 125585453 125585489 -25198064 + AT_rich Low_complexity Low_complexity 1 36 0 2332 70 7 0 chr11 125585497 125585797 -25197756 + AluY SINE Alu 1 302 -9 348 288 39 13 chr11 125586630 125586783 -25196770 + MER21-int LTR ERV1 1481 1637 -2554 5589 182 26 23 chr11 125586880 125588226 -25195327 + MER21-int LTR ERV1 1660 3085 -1106 676 191 56 8 chr11 125588224 125588350 -25195203 - MER21-int LTR ERV1 -3013 1178 1047 * 798 268 58 28 chr11 125588399 125588761 -25194792 + L1ME3A LINE L1 5513 5885 -285 382 250 0 0 chr11 125588767 125588855 -25194698 + L1ME LINE L1 5670 5757 -405 1336 253 57 46 chr11 125588879 125589424 -25194129 + L2 LINE L2 2019 2569 -745 1554 194 3 0 chr11 125589681 125589985 -25193568 - AluSx SINE Alu -7 305 1 1150 153 0 53 chr11 125590003 125590231 -25193322 - AluSg/x SINE Alu -15 297 82 1766 100 4 4 chr11 125590236 125590485 -25193068 - AluSx SINE Alu -13 299 51 822 68 83 30 chr11 125590508 125590640 -25192913 - MER85 DNA T2_type 0 139 1 340 214 57 0 chr11 125590909 125590979 -25192574 + MER94 DNA DNA 7 80 -54 1982 103 4 0 chr11 125592699 125592971 -25190582 + AluSg SINE Alu 15 287 -23 369 0 0 0 chr11 125592974 125593015 -25190538 + (GA)n Simple_repeat Simple_repeat 2 42 0 625 220 0 0 chr11 125593016 125593125 -25190428 - FLAM_A SINE Alu -32 110 2 21 0 0 0 chr11 125593141 125593162 -25190391 + AT_rich Low_complexity Low_complexity 1 21 0 199 308 149 9 chr11 125593880 125593987 -25189566 + MIR3 SINE MIR 68 189 -19 803 300 45 33 chr11 125594255 125594682 -25188871 + L1M4 LINE L1 3941 4372 -1774 368 191 28 13 chr11 125595006 125595141 -25188412 - MSTC LTR MaLR -148 280 63 1924 127 3 3 chr11 125595170 125595461 -25188092 + AluSx SINE Alu 1 291 -21 2121 121 0 0 chr11 125595474 125595772 -25187781 + AluSx SINE Alu 1 298 -14 300 289 106 10 chr11 125595934 125596038 -25187515 - MER5B DNA MER1_type -1 177 64 2339 60 3 13 chr11 125596038 125596352 -25187201 + AluY SINE Alu 1 311 0 797 156 0 30 chr11 125596360 125596495 -25187058 + AluJo SINE Alu 6 136 -176 1685 154 61 0 chr11 125596758 125597037 -25186516 - AluSg SINE Alu -14 296 1 212 0 36 0 chr11 125597053 125597081 -25186472 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1537 114 0 9 chr11 125597083 125597302 -25186251 - AluSq SINE Alu -32 281 65 36 23 0 0 chr11 125597357 125597400 -25186153 + AT_rich Low_complexity Low_complexity 1 43 0 1952 118 0 3 chr11 125597400 125597688 -25185865 - AluSx SINE Alu -25 287 1 2116 131 0 0 chr11 125598382 125598694 -25184859 + AluSx SINE Alu 1 312 0 813 123 8 15 chr11 125598699 125598829 -25184724 - MER57A LTR ERV1 -162 241 113 1121 245 7 3 chr11 125598834 125599120 -25184433 + AluSp SINE Alu 1 287 -16 432 268 197 16 chr11 125599360 125599543 -25184010 - MIR SINE MIR -19 243 28 194 328 55 16 chr11 125599579 125599707 -25183846 + L2 LINE L2 1274 1406 -1908 808 217 52 24 chr11 125599847 125600059 -25183494 + MER20 DNA MER1_type 2 219 0 271 203 68 0 chr11 125600152 125600211 -25183342 + MER5A DNA MER1_type 9 71 -118 461 238 59 0 chr11 125600258 125600359 -25183194 - MER63 DNA MER1_type -273 787 681 1706 165 0 0 chr11 125600934 125601207 -25182346 - AluJo SINE Alu -39 273 1 2312 73 7 0 chr11 125601268 125601570 -25181983 - AluSq SINE Alu -9 304 1 3394 73 11 9 chr11 125601591 125602043 -25181510 - L1PA10 LINE L1 -8 6160 5708 1271 123 57 0 chr11 125602044 125602256 -25181297 - L1MB3 LINE L1 -143 6040 5817 2143 93 3 0 chr11 125602258 125602547 -25181006 - AluSx SINE Alu -22 290 1 649 245 11 70 chr11 125602724 125603096 -25180457 + L1MEc LINE L1 1875 2224 -4172 1923 137 3 3 chr11 125603137 125603430 -25180123 + AluSx SINE Alu 1 293 -19 1299 224 61 7 chr11 125603468 125603763 -25179790 + L1MD2 LINE L1 5787 6097 -262 227 331 0 14 chr11 125604015 125604157 -25179396 + C-rich Low_complexity Low_complexity 2 141 0 272 251 3 1 chr11 125604757 125604849 -25178704 + L1MC4 LINE L1 7690 8042 0 1514 195 7 10 chr11 125605541 125605843 -25177710 - AluJb SINE Alu -11 301 1 1717 127 73 60 chr11 125605947 125606265 -25177288 + THE1C LTR MaLR 1 326 -49 1861 86 8 0 chr11 125606265 125606521 -25177032 + AluSq SINE Alu 56 313 0 1717 127 73 60 chr11 125606521 125606572 -25176981 + THE1C LTR MaLR 326 375 0 1999 113 32 0 chr11 125606730 125607014 -25176539 - AluSx SINE Alu -15 297 5 344 350 7 28 chr11 125607876 125608019 -25175534 + MIR SINE MIR 5 144 -118 800 166 50 2 chr11 125608035 125608200 -25175353 - MLT1E3 LTR MaLR -4 620 471 227 279 151 0 chr11 125608181 125608267 -25175286 - MER63A DNA MER1_type -7 203 105 * 1462 197 19 10 chr11 125608267 125608576 -25174977 + AluJb SINE Alu 1 312 0 532 164 9 9 chr11 125608579 125608695 -25174858 + GA-rich Low_complexity Low_complexity 2 117 0 243 290 81 40 chr11 125608873 125608997 -25174556 + L2 LINE L2 3169 3297 -16 251 203 45 40 chr11 125609305 125609482 -25174071 + (CGCGG)n Simple_repeat Simple_repeat 2 179 0 21 0 0 0 chr11 125609523 125609544 -25174009 + GC_rich Low_complexity Low_complexity 1 21 0 228 216 27 27 chr11 125609783 125609894 -25173659 + (CGCGG)n Simple_repeat Simple_repeat 1 111 0 804 247 163 36 chr11 125610024 125610380 -25173173 + L2 LINE L2 2881 3281 -32 268 229 255 25 chr11 125610381 125610538 -25173015 - L2 LINE L2 -817 2497 2305 445 261 22 22 chr11 125610540 125610678 -25172875 + L2 LINE L2 2172 2309 -1005 208 216 0 0 chr11 125610787 125610824 -25172729 + L2 LINE L2 2323 2359 -955 1707 121 0 0 chr11 125610831 125611070 -25172483 + AluSx SINE Alu 5 243 -69 31 0 0 0 chr11 125611090 125611121 -25172432 + AT_rich Low_complexity Low_complexity 1 31 0 960 82 52 0 chr11 125611132 125611266 -25172287 + AluSq/x SINE Alu 2 142 -171 1870 118 40 0 chr11 125611267 125611563 -25171990 + AluSg SINE Alu 1 308 -2 355 360 27 47 chr11 125611592 125611889 -25171664 + L2 LINE L2 2388 2678 -636 1014 285 53 44 chr11 125613748 125613829 -25169724 + L1M4 LINE L1 3723 3802 -2344 2546 30 0 0 chr11 125613829 125614125 -25169428 + AluYa5 SINE Alu 1 296 -15 1014 285 53 44 chr11 125614125 125614478 -25169075 + L1M4 LINE L1 3802 4165 -1981 1998 118 0 4 chr11 125614478 125614758 -25168795 + AluSx SINE Alu 5 283 -29 1014 285 53 44 chr11 125614758 125614849 -25168704 + L1M4 LINE L1 4165 4254 -1892 279 143 41 0 chr11 125614849 125614898 -25168655 + MER66B LTR ERV1 295 345 -141 2068 128 3 0 chr11 125614916 125615228 -25168325 + AluSp SINE Alu 1 313 0 1749 208 72 0 chr11 125615253 125615685 -25167868 + L1M4 LINE L1 4741 5203 -943 2184 109 0 3 chr11 125615685 125615997 -25167556 + AluY SINE Alu 1 311 0 813 123 8 15 chr11 125616002 125616132 -25167421 - MER57A LTR ERV1 -162 241 113 529 202 18 0 chr11 125616138 125616247 -25167306 + AluSq/x SINE Alu 2 112 -200 21 0 0 0 chr11 125616572 125616593 -25166960 + GC_rich Low_complexity Low_complexity 1 21 0 57 75 0 0 chr11 125616647 125616767 -25166786 + GC_rich Low_complexity Low_complexity 1 120 0 721 257 123 68 chr11 125618409 125619158 -25164395 - L2 LINE L2 -5 3308 2491 2173 91 16 0 chr11 125619632 125619940 -25163613 - AluSp SINE Alu 0 313 1 253 254 75 35 chr11 125620787 125620960 -25162593 - L1ME3A LINE L1 -222 5948 5769 807 146 0 0 chr11 125621021 125621144 -25162409 + AluJo SINE Alu 1 123 -189 384 245 154 14 chr11 125621169 125621312 -25162241 - L1ME3A LINE L1 -360 5761 5599 1081 153 0 16 chr11 125622796 125622979 -25160574 + AluJo SINE Alu 129 308 -4 1417 113 5 5 chr11 125623353 125623556 -25159997 + AluSx SINE Alu 27 229 -83 800 173 43 7 chr11 125623566 125623705 -25159848 - AluJo SINE Alu -167 145 2 362 306 37 94 chr11 125624220 125624465 -25159088 - MIR SINE MIR -6 256 26 262 202 12 83 chr11 125625337 125625421 -25158132 - L1MC5 LINE L1 -733 7228 7151 2013 117 0 13 chr11 125625465 125625764 -25157789 - AluSx SINE Alu -17 295 1 490 183 19 0 chr11 125625861 125625965 -25157588 - L1MB2 LINE L1 -45 6126 6021 * 1152 124 8 17 chr11 125625941 125626140 -25157413 - L1MB2 LINE L1 -181 5990 5814 3153 198 80 55 chr11 125626157 125626600 -25156953 - L1MB3 LINE L1 -27 6156 5726 1646 175 7 3 chr11 125626600 125626886 -25156667 + AluJb SINE Alu 3 289 -23 3153 198 80 55 chr11 125626886 125627005 -25156548 - L1MB3 LINE L1 -457 5726 5611 1839 142 10 6 chr11 125627005 125627316 -25156237 - AluSx SINE Alu 0 312 1 3153 198 80 55 chr11 125627316 125627328 -25156225 - L1MB3 LINE L1 -572 5611 5601 1699 152 9 47 chr11 125627328 125627650 -25155903 - AluJb SINE Alu -2 310 1 3153 198 80 55 chr11 125627650 125628022 -25155531 - L1MB3 LINE L1 -582 5601 5186 1882 126 11 3 chr11 125628026 125628311 -25155242 - AluSq SINE Alu -26 287 1 2030 121 7 0 chr11 125628336 125628641 -25154912 - AluSg SINE Alu -3 307 1 1244 81 0 0 chr11 125628674 125628834 -25154719 + AluSc SINE Alu 135 294 -15 205 324 57 19 chr11 125629228 125629333 -25154220 + L2 LINE L2 2913 3021 -251 1514 189 21 7 chr11 125629413 125629720 -25153833 - AluJb SINE Alu 0 312 15 2239 71 0 14 chr11 125629758 125630054 -25153499 - AluYa5 SINE Alu -18 293 2 1547 174 0 32 chr11 125631533 125631815 -25151738 + AluJo SINE Alu 1 273 -39 2145 131 0 0 chr11 125631986 125632298 -25151255 - AluSx SINE Alu 0 312 1 397 273 139 67 chr11 125633053 125633262 -25150291 + MIR SINE MIR 20 243 -19 220 333 0 29 chr11 125633337 125633406 -25150147 - L2 LINE L2 0 3313 3247 800 255 96 46 chr11 125633685 125634121 -25149432 + LTR33 LTR ERVL 46 503 -18 960 59 0 0 chr11 125634199 125634317 -25149236 + AluSq/x SINE Alu 1 118 -195 644 52 0 0 chr11 125634317 125634394 -25149159 + AluY SINE Alu 212 288 -23 1122 97 34 11 chr11 125634394 125634569 -25148984 + AluSp SINE Alu 103 281 -32 272 322 91 14 chr11 125634590 125634733 -25148820 + MIR SINE MIR 1 154 -108 284 257 10 30 chr11 125635171 125635272 -25148281 + HERV16 LTR ERVL 261 359 -4637 1984 129 3 0 chr11 125635275 125635562 -25147991 + AluSc SINE Alu 1 288 -21 1913 119 48 0 chr11 125635566 125635860 -25147693 + AluSx SINE Alu 1 308 -4 1053 168 0 0 chr11 125635860 125636039 -25147514 + AluSg/x SINE Alu 134 312 0 2019 127 0 13 chr11 125636080 125636394 -25147159 - AluSg SINE Alu 0 310 1 490 198 0 47 chr11 125636476 125636582 -25146971 + AluJ/FLAM SINE Alu 1 101 -211 1997 104 6 61 chr11 125636609 125636937 -25146616 - AluSq SINE Alu -3 310 1 385 146 62 2 chr11 125636984 125637057 -25146496 + MSTD LTR MaLR 1 77 -349 1376 178 23 15 chr11 125637080 125637344 -25146209 + AluJb SINE Alu 1 266 -46 1207 203 83 28 chr11 125637344 125637634 -25145919 + MSTD LTR MaLR 91 396 0 22 56 0 0 chr11 125637837 125637873 -25145680 + AT_rich Low_complexity Low_complexity 1 36 0 2471 64 0 0 chr11 125637881 125638192 -25145361 + AluY SINE Alu 1 311 0 29 28 0 0 chr11 125638574 125638610 -25144943 + AT_rich Low_complexity Low_complexity 1 36 0 272 308 19 19 chr11 125638662 125638766 -25144787 - LTR16C LTR ERVL 0 491 388 1526 148 3 118 chr11 125639119 125639249 -25144304 + AluSx SINE Alu 1 144 -158 1940 144 3 0 chr11 125639249 125639548 -25144005 - AluSx SINE Alu -1 311 12 1526 148 3 118 chr11 125639548 125639749 -25143804 + AluSx SINE Alu 144 294 -8 2128 96 23 0 chr11 125639751 125640052 -25143501 + AluSg SINE Alu 1 308 -2 1560 89 4 4 chr11 125640211 125640436 -25143117 + AluY SINE Alu 74 298 -13 1703 139 11 0 chr11 125640436 125640709 -25142844 - AluSx SINE Alu -36 276 1 1150 153 0 53 chr11 125640727 125640955 -25142598 - AluSg/x SINE Alu -15 297 82 1751 102 0 4 chr11 125640960 125641204 -25142349 - AluSg SINE Alu -13 297 55 2140 117 0 0 chr11 125641245 125641543 -25142010 + AluSx SINE Alu 1 298 -14 310 293 95 9 chr11 125641705 125641809 -25141744 - MER5B DNA MER1_type -1 177 61 2366 65 3 7 chr11 125641809 125642117 -25141436 + AluY SINE Alu 1 307 -4 310 293 95 9 chr11 125642117 125642128 -25141425 - MER5B DNA MER1_type -117 61 52 2273 101 0 0 chr11 125642322 125642629 -25140924 - AluSx SINE Alu -5 307 1 2065 119 0 3 chr11 125643323 125643634 -25139919 + AluSx SINE Alu 1 310 -2 1552 110 0 9 chr11 125643709 125643928 -25139625 + AluSq SINE Alu 65 281 -32 212 0 36 0 chr11 125643930 125643958 -25139595 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 1685 154 61 0 chr11 125643974 125644253 -25139300 + AluSg SINE Alu 1 296 -14 797 156 0 30 chr11 125644516 125644651 -25138902 - AluJo SINE Alu -176 136 6 219 88 0 0 chr11 125644658 125644692 -25138861 + (T)n Simple_repeat Simple_repeat 1 34 0 633 171 72 92 chr11 125644839 125644991 -25138562 + MER61A LTR ERV1 195 343 0 187 233 0 23 chr11 125645163 125645206 -25138347 + MIR SINE MIR 111 152 -110 3381 110 20 58 chr11 125645337 125645748 -25137805 - MER4B LTR ERV1 0 779 229 2322 104 0 0 chr11 125645748 125646055 -25137498 - AluSx SINE Alu -5 307 1 3381 110 20 58 chr11 125646055 125646276 -25137277 - MER4B LTR ERV1 -550 229 1 1046 43 93 0 chr11 125646736 125646876 -25136677 - L1PA4 LINE L1 -2 6153 6001 2426 79 3 0 chr11 125646890 125647182 -25136371 - AluSp SINE Alu -16 297 5 347 280 47 41 chr11 125647190 125647396 -25136157 - MIR SINE MIR -42 220 19 319 186 0 17 chr11 125647890 125647949 -25135604 + MLT2D LTR ERVL 277 334 -80 1669 162 24 78 chr11 125647952 125648334 -25135219 + MLT1B LTR MaLR 1 361 -29 1360 110 6 6 chr11 125648479 125648661 -25134892 + AluSc SINE Alu 114 295 -14 227 221 116 47 chr11 125648849 125648935 -25134618 + L2 LINE L2 3179 3270 -2 1812 160 45 0 chr11 125649221 125649385 -25134168 - AluJo SINE Alu -12 300 116 378 0 0 0 chr11 125649385 125649427 -25134126 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1812 160 45 0 chr11 125649427 125649549 -25134004 - AluJo SINE Alu -196 116 1 2192 97 7 3 chr11 125650332 125650621 -25132932 + AluSx SINE Alu 1 290 -22 788 167 0 0 chr11 125650664 125650796 -25132757 + FLAM_C SINE Alu 2 133 0 1566 185 3 48 chr11 125651250 125651450 -25132103 - AluJb SINE Alu -13 299 116 2280 85 3 3 chr11 125651450 125651745 -25131808 + AluSc SINE Alu 1 295 -14 1566 185 3 48 chr11 125651745 125651857 -25131696 - AluJb SINE Alu -196 116 1 275 206 27 0 chr11 125651862 125651935 -25131618 + CT-rich Low_complexity Low_complexity 1 75 0 201 111 0 0 chr11 125651935 125651962 -25131591 + (TCCCC)n Simple_repeat Simple_repeat 2 28 0 807 131 0 0 chr11 125651964 125652071 -25131482 - FRAM SINE Alu -39 137 31 1733 113 0 9 chr11 125652132 125652363 -25131190 + AluSx SINE Alu 1 229 -83 808 171 43 7 chr11 125652373 125652513 -25131040 - AluJo SINE Alu -167 145 1 456 279 18 97 chr11 125653027 125653254 -25130299 - MIR SINE MIR -6 256 52 1304 91 29 6 chr11 125653310 125653485 -25130068 - AluSp SINE Alu -32 281 103 636 52 0 0 chr11 125653485 125653562 -25129991 - AluY SINE Alu -23 288 212 986 68 0 0 chr11 125653562 125653680 -25129873 - AluSq/x SINE Alu -195 118 1 767 254 96 45 chr11 125653754 125654194 -25129359 - LTR33 LTR ERVL -14 507 46 197 333 0 29 chr11 125654473 125654542 -25129011 + L2 LINE L2 3247 3313 0 313 273 139 67 chr11 125654617 125654826 -25128727 - MIR SINE MIR -19 243 20 2260 121 0 0 chr11 125655581 125655879 -25127674 + AluSx SINE Alu 1 298 -14 832 228 23 0 chr11 125656276 125656447 -25127106 + MER45A DNA AcHobo 4 178 0 198 328 75 0 chr11 125656575 125656642 -25126911 - L3b LINE CR1 -9 1574 1503 1895 111 85 0 chr11 125656761 125657032 -25126521 - AluSq SINE Alu -19 294 1 198 361 52 0 chr11 125657143 125657240 -25126313 - L2 LINE L2 0 3313 3212 553 183 25 150 chr11 125657240 125657514 -25126039 + MLT1C-int LTR MaLR 1116 1355 -16 2135 193 64 2 chr11 125657527 125657962 -25125591 + MLT1C LTR MaLR 6 467 0 612 300 90 5 chr11 125658041 125658264 -25125289 + MIR SINE MIR 2 243 -19 272 333 0 0 chr11 125658337 125658412 -25125141 + L2 LINE L2 3190 3264 -8 231 36 0 0 chr11 125659193 125659221 -25124332 + (TC)n Simple_repeat Simple_repeat 1 28 0 210 171 0 0 chr11 125660722 125660763 -25122790 + (TG)n Simple_repeat Simple_repeat 1 41 0 806 75 23 8 chr11 125661295 125661428 -25122125 + (TTTC)n Simple_repeat Simple_repeat 2 136 0 1520 137 125 8 chr11 125661434 125661682 -25121871 - AluSg SINE Alu -32 278 2 1935 176 3 3 chr11 125664999 125665311 -25118242 + AluJo SINE Alu 1 312 0 2045 162 51 32 chr11 125665402 125665753 -25117800 + L1MB3 LINE L1 4963 5325 -821 2278 84 3 16 chr11 125665753 125666063 -25117490 + AluY SINE Alu 1 306 -5 2045 162 51 32 chr11 125666063 125666144 -25117409 + L1MB3 LINE L1 5325 5403 -743 1579 223 46 27 chr11 125666145 125666512 -25117041 + MLT1A2 LTR MaLR 1 374 0 4013 116 18 40 chr11 125666512 125666952 -25116601 + L1MB3 LINE L1 5400 5823 -360 2281 93 3 0 chr11 125666952 125667241 -25116312 + AluSx SINE Alu 1 290 -22 4013 116 18 40 chr11 125667241 125667455 -25116098 + L1MB3 LINE L1 5823 6040 -143 3504 62 13 4 chr11 125667456 125667908 -25115645 + L1PA10 LINE L1 5708 6163 -5 2254 99 17 3 chr11 125667930 125668232 -25115321 + AluSx SINE Alu 1 306 -6 240 203 34 0 chr11 125668449 125668508 -25115045 + L1M LINE L1 5357 5417 -747 4559 179 15 17 chr11 125668522 125668534 -25115019 + L1MB7 LINE L1 5299 5310 -874 853 131 13 13 chr11 125668534 125668687 -25114866 + L1MB3 LINE L1 6029 6181 -2 4559 179 15 17 chr11 125668687 125668960 -25114593 + L1MB7 LINE L1 5310 5582 -602 2134 116 3 3 chr11 125668960 125669252 -25114301 + AluSx SINE Alu 1 292 -20 771 11 0 0 chr11 125669252 125669340 -25114213 + (GGAAA)n Simple_repeat Simple_repeat 3 90 0 4559 179 15 17 chr11 125669340 125669940 -25113613 + L1MB7 LINE L1 5580 6184 0 1813 83 0 0 chr11 125670145 125670373 -25113180 + AluSg/x SINE Alu 82 309 -3 1920 162 0 29 chr11 125671138 125671452 -25112101 - AluJo SINE Alu -7 305 1 2427 68 3 13 chr11 125672932 125673242 -25110311 + AluY SINE Alu 2 308 -3 1875 164 19 13 chr11 125673251 125673527 -25110026 + AluJb SINE Alu 1 281 -31 207 0 0 0 chr11 125673527 125673550 -25110003 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1875 164 19 13 chr11 125673550 125673583 -25109970 + AluJb SINE Alu 281 312 0 2352 74 10 0 chr11 125674151 125674447 -25109106 - AluSp SINE Alu -14 299 1 2116 141 7 0 chr11 125674488 125674793 -25108760 - AluSx SINE Alu -5 307 1 2292 115 0 0 chr11 125674928 125675232 -25108321 - AluSx SINE Alu -8 304 1 2437 88 3 0 chr11 125675257 125675563 -25107990 - AluSg SINE Alu -3 307 1 21 36 0 0 chr11 125677622 125677650 -25105903 + GC_rich Low_complexity Low_complexity 1 28 0 2796 92 26 81 chr11 125677701 125678465 -25105088 + SVA Other Other 393 868 -520 6048 81 12 42 chr11 125678482 125679424 -25104129 + SVA Other Other 433 1345 -41 326 317 71 33 chr11 125679482 125679665 -25103888 - L2 LINE L2 -197 3116 2927 * 552 255 43 6 chr11 125679645 125679806 -25103747 - MIR SINE MIR -3 259 93 860 108 58 0 chr11 125679841 125679961 -25103592 - MSTA LTR MaLR -9 419 293 1929 158 0 34 chr11 125680085 125680407 -25103146 - AluJo SINE Alu -1 311 1 2473 68 0 13 chr11 125681887 125682198 -25101355 + AluY SINE Alu 2 308 -3 1897 161 19 13 chr11 125682207 125682483 -25101070 + AluJb SINE Alu 1 281 -31 207 0 0 0 chr11 125682483 125682506 -25101047 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1897 161 19 13 chr11 125682506 125682539 -25101014 + AluJb SINE Alu 281 312 0 1201 89 25 0 chr11 125683102 125683259 -25100294 - AluSc SINE Alu -14 295 135 2437 88 3 0 chr11 125683292 125683598 -25099955 + AluSg SINE Alu 1 307 -3 2292 115 0 0 chr11 125683623 125683927 -25099626 + AluSx SINE Alu 1 304 -8 2116 141 7 0 chr11 125684062 125684367 -25099186 + AluSx SINE Alu 1 307 -5 2436 87 3 0 chr11 125684408 125684720 -25098833 + AluSp SINE Alu 1 313 0 2244 78 11 7 chr11 125684867 125685189 -25098364 - AluSp SINE Alu 0 323 1 681 245 11 70 chr11 125685366 125685738 -25097815 + L1ME1 LINE L1 1875 2224 -4172 1755 184 3 3 chr11 125685779 125686073 -25097480 + AluSx SINE Alu 1 294 -18 1899 227 106 8 chr11 125686112 125686440 -25097113 + L1MD2 LINE L1 5787 6176 -183 255 103 0 0 chr11 125686440 125686479 -25097074 + (CA)n Simple_repeat Simple_repeat 2 40 0 1899 227 106 8 chr11 125686479 125686622 -25096931 + L1MD2 LINE L1 6176 6304 -55 1214 232 90 48 chr11 125686632 125686834 -25096719 + L1ME1 LINE L1 2282 2474 -3741 1741 162 26 17 chr11 125686834 125687136 -25096417 + AluJb SINE Alu 1 305 -7 1214 232 90 48 chr11 125687136 125687304 -25096249 + L1ME1 LINE L1 2474 2675 -3540 2284 104 0 0 chr11 125687304 125687601 -25095952 + AluSq SINE Alu 1 297 -16 1214 232 90 48 chr11 125687601 125687664 -25095889 + L1ME1 LINE L1 2675 2734 -3481 * 2873 224 44 4 chr11 125687661 125688385 -25095168 + L1ME1 LINE L1 4170 4922 -1293 2574 215 68 40 chr11 125688367 125688600 -25094953 + L1ME1 LINE L1 5331 5556 -679 * 1686 171 7 10 chr11 125688600 125688893 -25094660 + AluSq SINE Alu 1 292 -21 2574 215 68 40 chr11 125688893 125689361 -25094192 + L1ME1 LINE L1 5556 6052 -183 589 125 0 0 chr11 125689437 125689550 -25094003 + AluJb SINE Alu 202 314 0 1128 252 75 15 chr11 125689550 125690019 -25093534 + L1ME2 LINE L1 3251 3747 -2468 21 36 0 0 chr11 125690050 125690078 -25093475 + AT_rich Low_complexity Low_complexity 1 28 0 1146 142 12 0 chr11 125690079 125690248 -25093305 + AluSg/x SINE Alu 122 292 -18 43 29 0 15 chr11 125690248 125690262 -25093291 + AT_rich Low_complexity Low_complexity 1 14 -53 2320 86 14 0 chr11 125690262 125690553 -25093000 - AluSp SINE Alu -18 295 1 43 29 0 15 chr11 125690553 125690606 -25092947 + AT_rich Low_complexity Low_complexity 14 67 0 980 193 241 85 chr11 125690626 125690896 -25092657 - MSTC LTR MaLR 0 428 63 2112 121 3 0 chr11 125690925 125691215 -25092338 + AluSx SINE Alu 1 291 -21 1999 108 34 74 chr11 125691228 125691552 -25092001 + AluSq SINE Alu 1 311 -2 317 222 56 0 chr11 125691591 125691681 -25091872 + L1ME2 LINE L1 5216 5310 -905 233 157 29 29 chr11 125691690 125691760 -25091793 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 3651 204 32 42 chr11 125691784 125692194 -25091359 + L1ME2 LINE L1 5325 5738 -495 2464 72 16 0 chr11 125692194 125692499 -25091054 + AluY SINE Alu 2 311 0 3651 204 32 42 chr11 125692499 125692907 -25090646 + L1ME2 LINE L1 5738 6149 -84 1990 131 3 7 chr11 125692907 125693204 -25090349 + AluSx SINE Alu 1 296 -16 2209 110 3 0 chr11 125693205 125693507 -25090046 + AluSx SINE Alu 1 303 0 3651 204 32 42 chr11 125693507 125693601 -25089952 + L1ME2 LINE L1 6148 6231 -2 2560 63 10 0 chr11 125693609 125693911 -25089642 + AluY SINE Alu 1 305 -6 2300 92 10 3 chr11 125693996 125694301 -25089252 + AluSx SINE Alu 2 308 -4 1908 167 0 6 chr11 125694723 125695035 -25088518 - AluJb SINE Alu -2 310 1 671 286 23 58 chr11 125697820 125698079 -25085474 - MIR SINE MIR -8 254 5 330 268 114 0 chr11 125698302 125698425 -25085128 - MIR3 SINE MIR -69 139 3 1095 229 38 15 chr11 125700865 125701008 -25082545 + L1MC4 LINE L1 6504 6657 -1385 2159 110 7 0 chr11 125701008 125701317 -25082236 + AluSx SINE Alu 1 311 -1 1095 229 38 15 chr11 125701317 125701439 -25082114 + L1MC4 LINE L1 6657 6775 -1267 1091 175 95 135 chr11 125701449 125701565 -25081988 + L1MC4 LINE L1 7458 7577 -465 1741 166 3 10 chr11 125701565 125701860 -25081693 + AluJo SINE Alu 1 293 -19 1091 175 95 135 chr11 125701860 125702146 -25081407 + L1MC4 LINE L1 7577 7843 -199 2116 125 0 0 chr11 125702146 125702451 -25081102 + AluSx SINE Alu 8 312 0 1091 175 95 135 chr11 125702451 125702498 -25081055 + L1MC4 LINE L1 7843 7890 -152 318 230 2 0 chr11 125702502 125702582 -25080971 + L1MC4 LINE L1 7913 8042 0 1514 195 7 10 chr11 125703276 125703578 -25079975 - AluJb SINE Alu -11 301 1 1711 127 73 62 chr11 125703682 125704000 -25079553 + THE1C LTR MaLR 1 326 -49 1697 88 9 0 chr11 125704000 125704256 -25079297 + AluSq SINE Alu 56 313 0 1711 127 73 62 chr11 125704256 125704307 -25079246 + THE1C LTR MaLR 326 375 0 1970 116 32 0 chr11 125704465 125704749 -25078804 - AluSx SINE Alu -15 297 5 344 350 7 28 chr11 125705610 125705753 -25077800 + MIR SINE MIR 5 144 -118 800 166 50 2 chr11 125705769 125705934 -25077619 - MLT1E3 LTR MaLR -4 620 471 290 292 100 39 chr11 125705915 125706001 -25077552 - MER63A DNA MER1_type -1485 203 104 * 1440 192 17 11 chr11 125706001 125706470 -25077083 + AluJb SINE Alu 1 471 0 290 292 100 39 chr11 125706470 125706512 -25077041 - MER63A DNA MER1_type -1584 104 66 243 290 81 40 chr11 125706635 125706759 -25076794 + L2 LINE L2 3169 3297 -16 209 182 0 0 chr11 125707491 125707524 -25076029 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 206 313 91 56 chr11 125707635 125707833 -25075720 - L2 LINE L2 -174 3098 2894 1584 167 40 17 chr11 125708569 125708869 -25074684 - AluJo SINE Alu -5 307 1 23 0 0 0 chr11 125709452 125709475 -25074078 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr11 125709641 125709677 -25073876 + AT_rich Low_complexity Low_complexity 1 36 0 272 308 19 19 chr11 125709729 125709833 -25073720 - LTR16C LTR ERVL 0 491 388 1831 156 7 3 chr11 125710186 125710493 -25073060 + AluSx SINE Alu 1 308 -4 2059 102 3 3 chr11 125710534 125710827 -25072726 + AluSx SINE Alu 1 293 -19 1738 237 106 11 chr11 125710865 125711194 -25072359 + L1MD2 LINE L1 5787 6176 -183 267 103 0 0 chr11 125711194 125711233 -25072320 + (CA)n Simple_repeat Simple_repeat 2 40 0 1738 237 106 11 chr11 125711233 125711376 -25072177 + L1MD2 LINE L1 6176 6304 -55 363 265 175 55 chr11 125711386 125711586 -25071967 + L1 LINE L1 2213 2436 -3710 1625 163 28 0 chr11 125711588 125711870 -25071683 + AluJb SINE Alu 1 290 -22 2164 121 0 0 chr11 125712407 125712705 -25070848 - AluSx SINE Alu -14 298 1 234 242 30 0 chr11 125712714 125712780 -25070773 - MER94 DNA DNA -62 72 5 307 221 125 44 chr11 125712871 125713007 -25070546 + L1 LINE L1 3055 3201 -2945 1760 147 31 17 chr11 125713729 125714021 -25069532 + AluSx SINE Alu 1 296 -16 2294 68 7 0 chr11 125714213 125714507 -25069046 - AluSq SINE Alu -17 296 1 1907 194 11 99 chr11 125714601 125714693 -25068860 + MLT2B1 LTR ERVL 14 112 -408 1952 100 21 21 chr11 125714693 125714973 -25068580 + AluSx SINE Alu 1 280 -32 1907 194 11 99 chr11 125714973 125715427 -25068126 + MLT2B1 LTR ERVL 112 512 -8 424 294 101 60 chr11 125715429 125715538 -25068015 + L2 LINE L2 2604 2707 -607 2130 128 0 0 chr11 125715538 125715843 -25067710 - AluSx SINE Alu -7 305 1 424 294 101 60 chr11 125715843 125716080 -25067473 + L2 LINE L2 2707 2964 -350 336 172 172 0 chr11 125716404 125716468 -25067085 + MER69 DNA AcHobo 4 78 -2448 1982 100 18 0 chr11 125716484 125716765 -25066788 + AluSq SINE Alu 1 286 -27 2066 135 0 3 chr11 125716786 125717097 -25066456 - AluSx SINE Alu 0 312 3 659 148 92 0 chr11 125717099 125717241 -25066312 + MER69 DNA AcHobo 2359 2513 -13 300 98 0 0 chr11 125717454 125717495 -25066058 - MLT1B LTR MaLR -341 49 9 315 275 40 9 chr11 125717507 125717637 -25065916 - MIR SINE MIR -62 146 16 688 262 76 18 chr11 125717891 125718116 -25065437 + MIR SINE MIR 13 250 -12 33 0 0 0 chr11 125718121 125718154 -25065399 + AT_rich Low_complexity Low_complexity 1 33 0 2074 110 3 0 chr11 125718154 125718444 -25065109 + AluSx SINE Alu 1 291 -21 183 375 27 27 chr11 125719509 125719599 -25063954 + MIR3 SINE MIR 9 98 -110 784 196 64 0 chr11 125719599 125719772 -25063781 + MER5A DNA MER1_type 1 184 -5 206 309 94 20 chr11 125719780 125719929 -25063624 + MIR SINE MIR 99 258 -4 1717 119 83 18 chr11 125720174 125720452 -25063101 + AluSx SINE Alu 1 296 -16 193 212 0 0 chr11 125720711 125720744 -25062809 - L2 LINE L2 -10 3303 3271 1460 145 13 0 chr11 125720786 125721013 -25062540 + MER30 DNA MER1_type 1 230 0 420 300 76 49 chr11 125721501 125721724 -25061829 - MIR SINE MIR -3 259 31 2093 88 3 3 chr11 125721801 125722123 -25061430 - AluSx SINE Alu 0 322 1 342 161 18 0 chr11 125722123 125722179 -25061374 - L2 LINE L2 -6 3307 3251 348 24 0 0 chr11 125722576 125722617 -25060936 + (CA)n Simple_repeat Simple_repeat 2 42 0 1098 171 5 3 chr11 125723743 125723943 -25059610 + L1MD3 LINE L1 7788 7979 -16 279 313 0 22 chr11 125723963 125724097 -25059456 + CT-rich Low_complexity Low_complexity 1 131 0 371 291 19 19 chr11 125725283 125725386 -25058167 - L2 LINE L2 -231 3082 2980 216 297 14 54 chr11 125725383 125725457 -25058096 + L2 LINE L2 3202 3272 0 * 313 261 235 0 chr11 125727046 125727165 -25056388 + MIR3 SINE MIR 19 165 -43 430 328 17 34 chr11 125727482 125727659 -25055894 + MER5B DNA MER1_type 2 175 -3 684 279 132 5 chr11 125730658 125730862 -25052691 + MIR SINE MIR 12 241 -21 2208 104 3 0 chr11 125730909 125731218 -25052335 - AluSg SINE Alu 0 310 1 235 114 68 0 chr11 125731508 125731552 -25052001 - MIR3 SINE MIR 0 208 162 356 0 23 0 chr11 125732116 125732160 -25051393 + (TG)n Simple_repeat Simple_repeat 2 46 0 591 314 50 9 chr11 125732242 125732462 -25051091 + MIR SINE MIR 34 262 0 216 213 0 21 chr11 125732522 125732569 -25050984 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 304 302 86 0 chr11 125732569 125732685 -25050868 - MIR SINE MIR -56 206 81 243 0 0 0 chr11 125733584 125733611 -25049942 + (CA)n Simple_repeat Simple_repeat 1 27 0 218 191 43 0 chr11 125733756 125733803 -25049750 + MER5B DNA MER1_type 1 49 -129 1867 128 0 14 chr11 125733823 125734112 -25049441 - AluJb SINE Alu -27 285 1 495 235 7 81 chr11 125734113 125734262 -25049291 - MER5B DNA MER1_type -35 143 6 253 167 0 0 chr11 125735238 125735280 -25048273 + L2 LINE L2 3263 3304 -9 2210 75 0 14 chr11 125735392 125735713 -25047840 - AluSq SINE Alu 0 313 1 292 255 49 69 chr11 125735749 125735851 -25047702 - MER5A DNA MER1_type -57 132 33 590 244 52 87 chr11 125736555 125736642 -25046911 - MIR SINE MIR -3 259 171 2051 109 3 23 chr11 125736642 125736944 -25046609 + AluSq SINE Alu 1 296 -17 590 244 52 87 chr11 125736944 125737086 -25046467 - MIR SINE MIR -91 171 38 206 325 0 65 chr11 125737552 125737629 -25045924 + MIR SINE MIR 120 191 -71 287 250 0 26 chr11 125737968 125738044 -25045509 - MIR SINE MIR -71 137 64 311 213 62 25 chr11 125738068 125738148 -25045405 + MIR SINE MIR 69 151 -111 1905 210 3 6 chr11 125738160 125738512 -25045041 - MLT1A1 LTR MaLR -12 353 3 255 286 36 71 chr11 125738518 125738658 -25044895 + MIR SINE MIR 128 262 0 1994 129 0 19 chr11 125739359 125739668 -25043885 - AluSx SINE Alu -9 303 1 2430 74 0 0 chr11 125739681 125740012 -25043541 - AluY SINE Alu 0 331 1 619 180 167 7 chr11 125740903 125741053 -25042500 + MER96 DNA MER1_type 1 174 -1 2188 74 14 7 chr11 125741137 125741433 -25042120 - AluSq SINE Alu -15 298 1 1982 145 0 0 chr11 125741607 125741904 -25041649 - AluSx SINE Alu -15 297 1 573 262 48 117 chr11 125742168 125742588 -25040965 - L2 LINE L2 -1 3312 2922 252 318 78 23 chr11 125743098 125743227 -25040326 - MIR3 SINE MIR -3 205 70 507 269 7 35 chr11 125743291 125743436 -25040117 - MIR SINE MIR -114 148 8 180 0 0 0 chr11 125743854 125743874 -25039679 + (T)n Simple_repeat Simple_repeat 1 20 0 303 309 201 2 chr11 125744156 125744300 -25039253 - MIR SINE MIR -21 187 17 1923 123 3 0 chr11 125744561 125744845 -25038708 - AluSx SINE Alu -19 293 9 469 291 111 13 chr11 125744872 125745106 -25038447 + MARNA DNA Mariner 177 433 -153 376 297 64 26 chr11 125745135 125745249 -25038304 + MIR3 SINE MIR 34 154 -54 2499 163 31 27 chr11 125745249 125745733 -25037820 - MER66B LTR ERV1 0 486 1 376 297 64 26 chr11 125745733 125745777 -25037776 + MIR3 SINE MIR 154 195 -13 2127 123 7 0 chr11 125746001 125746310 -25037243 + AluSx SINE Alu 1 311 -1 1516 153 11 31 chr11 125746572 125746833 -25036720 - AluJo SINE Alu -56 256 1 592 298 63 9 chr11 125746900 125747131 -25036422 + MIR SINE MIR 19 258 -4 2079 94 47 3 chr11 125748015 125748312 -25035241 + AluSq SINE Alu 1 310 -3 2213 113 3 0 chr11 125748987 125749271 -25034282 + AluSq SINE Alu 1 288 -25 196 42 0 0 chr11 125749271 125749295 -25034258 + (CAAAA)n Simple_repeat Simple_repeat 2 85 0 505 299 133 30 chr11 125749384 125749618 -25033935 - MIR SINE MIR 0 262 5 595 138 83 39 chr11 125750037 125750218 -25033335 + MER53 DNA DNA 1 189 0 1113 252 89 30 chr11 125750223 125750592 -25032961 - MLT1J2 LTR MaLR -59 391 1 1666 174 20 14 chr11 125750822 125751116 -25032437 - AluJb SINE Alu -14 298 3 23 0 0 0 chr11 125751118 125751141 -25032412 + AT_rich Low_complexity Low_complexity 1 23 0 267 305 86 53 chr11 125751417 125751604 -25031949 - L2 LINE L2 -1 3312 3120 217 159 23 0 chr11 125753425 125753469 -25030084 + (TGG)n Simple_repeat Simple_repeat 1 45 0 2343 114 0 0 chr11 125753672 125753970 -25029583 - AluSx SINE Alu -14 298 1 21 0 0 0 chr11 125754338 125754359 -25029194 + AT_rich Low_complexity Low_complexity 1 21 0 651 310 61 12 chr11 125754688 125754933 -25028620 + MIR SINE MIR 6 262 0 294 132 0 0 chr11 125757520 125757573 -25025980 + (GGGGA)n Simple_repeat Simple_repeat 3 55 0 371 304 73 19 chr11 125760589 125760849 -25022704 - L2 LINE L2 -153 3160 2887 844 283 91 58 chr11 125760872 125761445 -25022108 - L2 LINE L2 -660 2654 2063 1449 148 0 13 chr11 125761550 125761780 -25021773 + AluJo SINE Alu 86 312 0 4063 158 11 46 chr11 125761781 125761849 -25021704 - L1MB7 LINE L1 -3 6181 6112 1819 159 3 14 chr11 125761849 125762144 -25021409 + AluJo SINE Alu 1 292 -20 4063 158 11 46 chr11 125762144 125762718 -25020835 - L1MB7 LINE L1 -72 6112 5576 2150 124 3 10 chr11 125762718 125763024 -25020529 + AluSx SINE Alu 1 304 -8 4063 158 11 46 chr11 125763024 125763247 -25020306 - L1MB7 LINE L1 -608 5576 5347 823 144 32 0 chr11 125763457 125763582 -25019971 + AluJb SINE Alu 169 297 -15 557 171 0 9 chr11 125763588 125763693 -25019860 + AluJb SINE Alu 2 105 -207 923 322 78 34 chr11 125763693 125764259 -25019294 - L2 LINE L2 -1685 1629 1039 313 219 70 53 chr11 125764271 125764385 -25019168 + MER5A DNA MER1_type 1 116 -73 270 308 66 66 chr11 125764396 125764623 -25018930 - L2 LINE L2 -2986 328 102 410 168 137 21 chr11 125764734 125764829 -25018724 - FLAM_C SINE Alu -17 126 21 642 305 133 5 chr11 125765220 125765633 -25017920 - L1M4 LINE L1 -1034 5112 4647 1517 223 62 27 chr11 125765662 125765840 -25017713 + MLT1C LTR MaLR 3 173 -294 2349 91 0 19 chr11 125765840 125766147 -25017406 + AluY SINE Alu 1 301 -10 1517 223 62 27 chr11 125766147 125766417 -25017136 + MLT1C LTR MaLR 173 467 0 2135 113 0 17 chr11 125766435 125766727 -25016826 + AluSx SINE Alu 5 291 -21 436 260 8 74 chr11 125766733 125766857 -25016696 + L1M4 LINE L1 3347 3449 -2697 2021 134 37 0 chr11 125766857 125767155 -25016398 - AluSq SINE Alu -4 309 1 436 260 8 74 chr11 125767155 125767272 -25016281 + L1M4 LINE L1 3449 3572 -2574 565 335 97 30 chr11 125767310 125767428 -25016125 - L2 LINE L2 -681 2633 2524 1893 177 3 6 chr11 125767428 125767739 -25015814 + AluSx SINE Alu 1 310 -2 565 335 97 30 chr11 125767739 125768113 -25015440 - L2 LINE L2 -790 2524 2108 499 279 121 19 chr11 125768171 125768264 -25015289 - MLT1L LTR MaLR -49 566 484 1430 235 71 16 chr11 125768264 125768703 -25014850 - MLT1C LTR MaLR -1 466 4 499 279 121 19 chr11 125768703 125768824 -25014729 - MLT1L LTR MaLR -131 484 330 1810 90 6 65 chr11 125769175 125769497 -25014056 - AluY SINE Alu -8 303 1 340 188 29 0 chr11 125769498 125769567 -25013986 - MER5A DNA MER1_type -114 75 5 337 289 0 0 chr11 125769646 125769729 -25013824 - MLT1L LTR MaLR -532 83 1 404 296 107 10 chr11 125769734 125769940 -25013613 - L2 LINE L2 -1213 2101 1876 354 238 198 0 chr11 125770376 125770502 -25013051 + MIR SINE MIR 56 206 -56 1432 244 56 29 chr11 125770841 125771288 -25012265 - LTR16B LTR ERVL -5 459 1 284 261 54 22 chr11 125772290 125772382 -25011171 + MIR3 SINE MIR 98 192 -16 2219 106 3 23 chr11 125772503 125772805 -25010748 + AluSq SINE Alu 1 296 -17 436 204 93 9 chr11 125772839 125772947 -25010606 - MIR SINE MIR -108 154 38 199 325 0 65 chr11 125773412 125773489 -25010064 + MIR SINE MIR 120 191 -71 268 250 0 26 chr11 125773828 125773904 -25009649 - MIR SINE MIR -71 137 64 285 213 62 25 chr11 125773928 125774008 -25009545 + MIR SINE MIR 69 151 -111 1842 210 3 6 chr11 125774020 125774372 -25009181 - MLT1A1 LTR MaLR -12 353 3 240 286 36 71 chr11 125774378 125774518 -25009035 + MIR SINE MIR 128 262 0 1545 167 8 0 chr11 125775582 125775854 -25007699 - AluJb SINE Alu 0 307 34 2150 145 0 0 chr11 125778513 125778817 -25004736 + AluSx SINE Alu 1 304 -8 221 336 82 18 chr11 125779014 125779124 -25004429 - L2 LINE L2 -5 3267 3151 265 321 0 52 chr11 125779139 125779273 -25004280 - L2 LINE L2 -467 2847 2721 225 290 32 11 chr11 125779819 125779912 -25003641 - MIR SINE MIR -120 142 48 533 92 0 0 chr11 125780048 125780124 -25003429 - MADE1 DNA Mariner -4 76 1 333 191 202 0 chr11 125780264 125780358 -25003195 + MIR SINE MIR 150 262 0 279 308 71 59 chr11 125780342 125780511 -25003042 - L2 LINE L2 -6 3307 3137 * 200 256 0 0 chr11 125781427 125781470 -25002083 + (CA)n Simple_repeat Simple_repeat 2 44 0 226 261 76 33 chr11 125781503 125781595 -25001958 + L2 LINE L2 3214 3309 -4 515 254 83 6 chr11 125781647 125781816 -25001737 - MER112 DNA MER1_type -51 209 28 21 36 0 0 chr11 125782759 125782787 -25000766 + AT_rich Low_complexity Low_complexity 1 28 0 221 296 42 0 chr11 125784517 125784588 -24998965 - MIR SINE MIR -11 251 178 195 42 0 0 chr11 125784645 125784669 -24998884 + (TTG)n Simple_repeat Simple_repeat 3 26 0 1919 157 4 0 chr11 125784678 125784959 -24998594 - AluSx SINE Alu -30 282 1 1494 136 26 4 chr11 125785288 125785516 -24998037 - AluJb SINE Alu -79 233 1 505 263 95 0 chr11 125785517 125785654 -24997899 + MIR SINE MIR 113 262 0 210 350 50 8 chr11 125786298 125786418 -24997135 + MIR SINE MIR 33 157 -105 437 238 22 65 chr11 125787261 125787446 -24996107 + CT-rich Low_complexity Low_complexity 1 177 0 1856 184 0 7 chr11 125787960 125788264 -24995289 + AluJb SINE Alu 1 302 -10 397 285 13 26 chr11 125788267 125788418 -24995135 - MLT1I LTR MaLR -260 149 1 330 241 35 78 chr11 125788432 125788548 -24995005 + MIR SINE MIR 96 206 -56 1175 216 8 8 chr11 125789182 125789427 -24994126 - MLT1D LTR MaLR -4 501 257 2445 64 3 0 chr11 125790055 125790353 -24993200 - AluSp SINE Alu -14 299 1 608 274 50 22 chr11 125793264 125793366 -24990187 - MIR SINE MIR -3 259 161 2104 119 7 0 chr11 125793366 125793661 -24989892 - AluSp SINE Alu -16 297 1 608 274 50 22 chr11 125793661 125793794 -24989759 - MIR SINE MIR -101 161 19 207 228 117 111 chr11 125794656 125794715 -24988838 + MIR SINE MIR 78 135 -127 2440 83 0 3 chr11 125794715 125795016 -24988537 - AluSc SINE Alu -9 300 1 207 228 117 111 chr11 125795016 125795118 -24988435 + MIR SINE MIR 135 240 -22 2033 142 0 0 chr11 125795351 125795653 -24987900 - AluSx SINE Alu 0 302 1 21 0 0 0 chr11 125796102 125796123 -24987430 + AT_rich Low_complexity Low_complexity 1 21 0 2528 61 0 0 chr11 125797038 125797331 -24986222 - AluY SINE Alu -18 293 1 405 253 79 29 chr11 125797709 125797804 -24985749 - MIR SINE MIR 0 262 173 1297 195 101 13 chr11 125797804 125798037 -24985516 + MER46C DNA MER2_type 1 269 -69 3004 9 0 0 chr11 125798037 125798354 -24985199 - AluYb8 SINE Alu -1 317 1 1297 195 101 13 chr11 125798354 125798428 -24985125 + MER46C DNA MER2_type 269 335 -3 405 253 79 29 chr11 125798428 125798563 -24984990 - MIR SINE MIR -89 173 17 188 333 50 10 chr11 125798912 125799011 -24984542 + MIR SINE MIR 44 146 -62 21 0 0 0 chr11 125799192 125799213 -24984340 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 125799549 125799573 -24983980 + AT_rich Low_complexity Low_complexity 1 24 0 750 266 43 0 chr11 125799811 125800018 -24983535 + MIR SINE MIR 42 257 -5 317 335 57 28 chr11 125800545 125800717 -24982836 - MIR SINE MIR -11 251 70 2605 39 7 13 chr11 125800717 125801022 -24982531 + AluY SINE Alu 1 303 -8 317 335 57 28 chr11 125801022 125801061 -24982492 - MIR SINE MIR -192 70 34 285 226 128 20 chr11 125801924 125802070 -24981483 + MIR SINE MIR 46 205 -57 338 266 113 29 chr11 125803112 125803251 -24980302 + MIR SINE MIR 4 152 -62 2141 121 0 44 chr11 125803402 125803717 -24979836 - AluSx SINE Alu -11 301 1 186 43 0 0 chr11 125804567 125804590 -24978963 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 2089 83 4 4 chr11 125806752 125807016 -24976537 + AluSq SINE Alu 34 297 -16 1964 140 31 17 chr11 125807208 125807500 -24976053 - AluSx SINE Alu -16 296 1 305 197 82 95 chr11 125808211 125808358 -24975195 - L1 LINE L1 -2947 3199 3055 2329 120 0 0 chr11 125808524 125808823 -24974730 + AluSx SINE Alu 1 299 -13 1768 185 10 0 chr11 125808986 125809283 -24974270 - AluJb SINE Alu -12 300 1 2139 121 6 35 chr11 125809322 125809519 -24974034 - AluSx SINE Alu -6 306 120 2171 125 0 35 chr11 125809519 125809832 -24973721 - AluSx SINE Alu -10 302 1 2139 121 6 35 chr11 125809832 125809949 -24973604 - AluSx SINE Alu -192 120 1 336 257 59 22 chr11 125810524 125810660 -24972893 + MIR SINE MIR 35 175 -87 431 309 26 36 chr11 125810727 125810921 -24972632 + L2 LINE L2 3118 3309 -4 2360 93 10 0 chr11 125810944 125811244 -24972309 + AluSp SINE Alu 1 303 -10 379 308 79 8 chr11 125811267 125811507 -24972046 - L2 LINE L2 -170 3143 2887 822 285 93 58 chr11 125811530 125812102 -24971451 - L2 LINE L2 -660 2654 2063 1464 148 0 13 chr11 125812207 125812437 -24971116 + AluJo SINE Alu 86 312 0 4196 153 11 46 chr11 125812438 125812506 -24971047 - L1MB7 LINE L1 -3 6181 6112 1819 159 3 14 chr11 125812506 125812801 -24970752 + AluJo SINE Alu 1 292 -20 4196 153 11 46 chr11 125812801 125813375 -24970178 - L1MB7 LINE L1 -72 6112 5576 2144 124 3 10 chr11 125813375 125813681 -24969872 + AluSx SINE Alu 1 304 -8 4196 153 11 46 chr11 125813681 125813904 -24969649 - L1MB7 LINE L1 -608 5576 5347 831 143 32 0 chr11 125814114 125814240 -24969313 + AluJb SINE Alu 169 298 -14 669 135 0 0 chr11 125814245 125814349 -24969204 + AluJb SINE Alu 2 105 -207 923 322 78 34 chr11 125814349 125814915 -24968638 - L2 LINE L2 -1685 1629 1039 313 219 70 53 chr11 125814927 125815041 -24968512 + MER5A DNA MER1_type 1 116 -73 270 308 66 66 chr11 125815052 125815279 -24968274 - L2 LINE L2 -2986 328 102 573 179 116 0 chr11 125815390 125815502 -24968051 - FLAM_C SINE Alu -17 126 2 1297 104 0 0 chr11 125815510 125815674 -24967879 - AluSg/x SINE Alu -12 298 135 240 202 90 67 chr11 125815675 125815764 -24967789 - MLT1F LTR MaLR -428 114 24 590 305 107 14 chr11 125815795 125816188 -24967365 - L1M4 LINE L1 -1034 5112 4677 1556 222 60 27 chr11 125816237 125816416 -24967137 + MLT1C LTR MaLR 3 175 -292 2360 88 0 20 chr11 125816416 125816722 -24966831 + AluY SINE Alu 1 300 -11 1556 222 60 27 chr11 125816722 125816992 -24966561 + MLT1C LTR MaLR 175 467 0 2135 113 0 17 chr11 125817010 125817302 -24966251 + AluSx SINE Alu 5 291 -21 418 255 8 78 chr11 125817308 125817433 -24966120 + L1M4 LINE L1 3347 3448 -2698 2021 134 37 0 chr11 125817433 125817731 -24965822 - AluSq SINE Alu -4 309 1 418 255 8 78 chr11 125817731 125817848 -24965705 + L1M4 LINE L1 3448 3572 -2574 565 335 97 30 chr11 125817886 125818004 -24965549 - L2 LINE L2 -681 2633 2524 1893 177 3 6 chr11 125818004 125818315 -24965238 + AluSx SINE Alu 1 310 -2 565 335 97 30 chr11 125818315 125818689 -24964864 - L2 LINE L2 -790 2524 2108 1079 286 83 65 chr11 125818747 125818840 -24964713 - MLT1L LTR MaLR -49 566 476 1430 235 71 16 chr11 125818840 125819279 -24964274 - MLT1C LTR MaLR -1 466 4 1079 286 83 65 chr11 125819279 125819578 -24963975 - MLT1L LTR MaLR -139 476 159 770 203 21 57 chr11 125819578 125819699 -24963854 - MER5A DNA MER1_type 0 189 76 2543 76 0 0 chr11 125819699 125820000 -24963553 - AluY SINE Alu -10 301 1 770 203 21 57 chr11 125820000 125820070 -24963483 - MER5A DNA MER1_type -113 76 5 1079 286 83 65 chr11 125820070 125820232 -24963321 - MLT1L LTR MaLR -456 159 1 404 296 107 10 chr11 125820237 125820443 -24963110 - L2 LINE L2 -1213 2101 1876 354 238 198 0 chr11 125820879 125821005 -24962548 + MIR SINE MIR 56 206 -56 1417 244 58 29 chr11 125821344 125821790 -24961763 - LTR16B LTR ERVL -5 459 1 300 278 56 0 chr11 125822790 125822880 -24960673 + MIR3 SINE MIR 98 192 -16 2437 95 0 7 chr11 125823000 125823305 -24960248 + AluSx SINE Alu 1 303 -9 358 248 147 0 chr11 125823372 125823481 -24960072 - L2 LINE L2 -214 3058 2934 354 227 72 0 chr11 125823506 125823603 -24959950 + MER91C DNA MER1_type 37 140 0 278 290 46 30 chr11 125824552 125824683 -24958870 - MER94 DNA DNA 0 134 2 213 304 104 32 chr11 125824724 125824849 -24958704 - L2 LINE L2 -1 3271 3138 1953 129 31 0 chr11 125824899 125825185 -24958368 - AluJo SINE Alu -8 304 10 184 314 300 0 chr11 125825835 125825975 -24957578 - L3b LINE CR1 -28 1555 1374 1758 134 47 7 chr11 125825986 125826262 -24957291 + AluSg SINE Alu 1 287 -23 1113 129 0 0 chr11 125826447 125826594 -24956959 + AluSx SINE Alu 1 147 -166 908 143 8 0 chr11 125826832 125826965 -24956588 + AluSx SINE Alu 157 290 -20 479 253 126 35 chr11 125827132 125827292 -24956261 - MIR SINE MIR 0 262 118 1764 184 83 67 chr11 125827292 125827540 -24956013 + MLT1D LTR MaLR 3 246 -259 279 0 0 0 chr11 125827540 125827571 -24955982 + (CA)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr11 125827570 125827594 -24955959 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 1764 184 83 67 chr11 125827571 125827840 -24955713 + MLT1D LTR MaLR 246 505 0 479 253 126 35 chr11 125827840 125827853 -24955700 - MIR SINE MIR -144 118 73 497 278 31 2 chr11 125829258 125829404 -24954149 - MIR SINE MIR -63 145 30 212 266 72 50 chr11 125829557 125829696 -24953857 - L3b LINE CR1 -92 1491 1350 22 35 0 0 chr11 125832041 125832070 -24951483 + AT_rich Low_complexity Low_complexity 1 29 0 1868 117 14 41 chr11 125832221 125832511 -24951042 - AluSx SINE Alu -5 307 26 1141 65 0 0 chr11 125832589 125832742 -24950811 + L1PA4 LINE L1 6000 6152 -3 235 241 0 0 chr11 125832745 125832803 -24950750 + A-rich Low_complexity Low_complexity 1 58 0 1937 126 32 11 chr11 125833755 125834032 -24949521 - AluSx SINE Alu -22 290 8 299 274 66 87 chr11 125834230 125834316 -24949237 - MIR SINE MIR -43 219 133 2166 109 0 11 chr11 125834316 125834636 -24948917 - AluSg SINE Alu 0 317 1 299 274 66 87 chr11 125834636 125834777 -24948776 - MIR SINE MIR -129 133 15 502 296 151 0 chr11 125835017 125835223 -24948330 + MIR SINE MIR 13 249 -13 1693 151 46 39 chr11 125835361 125835666 -24947887 - AluJb SINE Alu -5 307 1 253 246 29 51 chr11 125837230 125837376 -24946177 + MIR SINE MIR 102 242 -20 282 29 0 0 chr11 125837385 125837420 -24946133 + (CA)n Simple_repeat Simple_repeat 1 35 0 250 289 58 0 chr11 125837597 125837701 -24945852 + L1MC/D LINE L1 5678 5787 -2021 2197 106 0 20 chr11 125838177 125838480 -24945073 - AluSg SINE Alu -13 297 1 338 292 75 92 chr11 125838547 125838652 -24944901 - L2 LINE L2 0 3272 3167 698 153 30 15 chr11 125838652 125838783 -24944770 - FLAM_C SINE Alu 0 133 1 338 292 75 92 chr11 125838783 125838982 -24944571 - L2 LINE L2 -105 3167 2973 472 239 80 80 chr11 125839195 125839421 -24944132 - L2 LINE L2 -557 2757 2532 2306 102 3 10 chr11 125841134 125841439 -24942114 - AluSx SINE Alu -9 303 1 501 318 91 63 chr11 125842299 125842865 -24940688 + L2 LINE L2 2665 3247 -25 259 274 147 56 chr11 125843491 125843688 -24939865 + L3 LINE CR1 1357 1571 -6 1933 144 13 13 chr11 125844108 125844406 -24939147 - AluSx SINE Alu -14 298 1 909 170 0 0 chr11 125844445 125844586 -24938967 + AluSq/x SINE Alu 2 142 -170 296 283 22 11 chr11 125844806 125844898 -24938655 - L2 LINE L2 -4 3268 3176 182 274 59 59 chr11 125844979 125845081 -24938472 - L2 LINE L2 -825 2489 2388 387 0 0 0 chr11 125846497 125846540 -24937013 + (CA)n Simple_repeat Simple_repeat 2 44 0 524 242 23 36 chr11 125847241 125847394 -24936159 + MIR3 SINE MIR 36 192 -16 45 55 0 0 chr11 125848405 125848478 -24935075 + AT_rich Low_complexity Low_complexity 1 73 0 428 238 238 0 chr11 125848518 125848724 -24934829 - L1ME4a LINE L1 -14 6107 5853 1233 149 15 5 chr11 125848731 125848926 -24934627 - AluJb SINE Alu 0 312 116 186 43 0 0 chr11 125849302 125849325 -24934228 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2214 152 0 0 chr11 125849791 125850100 -24933453 - AluJb SINE Alu -3 309 1 437 224 32 57 chr11 125850614 125850821 -24932732 + GA-rich Low_complexity Low_complexity 1 201 0 207 358 50 8 chr11 125851642 125851762 -24931791 - MIR SINE MIR -105 157 33 535 263 95 0 chr11 125852406 125852543 -24931010 - MIR SINE MIR 0 262 113 1480 136 26 4 chr11 125852544 125852772 -24930781 + AluJb SINE Alu 1 233 -79 2027 157 3 6 chr11 125853101 125853413 -24930140 + AluSx SINE Alu 1 311 -1 466 215 145 40 chr11 125854760 125854828 -24928725 - MIR SINE MIR -24 238 179 2464 148 21 32 chr11 125854828 125855079 -24928474 - MSTB LTR MaLR 0 426 178 2381 61 0 0 chr11 125855079 125855381 -24928172 + AluY SINE Alu 1 302 0 2464 148 21 32 chr11 125855381 125855557 -24927996 - MSTB LTR MaLR -248 178 1 466 215 145 40 chr11 125855557 125855688 -24927865 - MIR SINE MIR -83 179 18 22 0 0 0 chr11 125855842 125855864 -24927689 + AT_rich Low_complexity Low_complexity 1 22 0 279 257 48 57 chr11 125855929 125856034 -24927519 + MIR SINE MIR 46 149 -113 685 142 23 5 chr11 125856246 125856374 -24927179 - MLT1A1 LTR MaLR -200 174 1 2075 128 10 10 chr11 125856408 125856720 -24926833 - AluSx SINE Alu 0 312 1 1956 154 11 0 chr11 125856755 125857041 -24926512 + AluJo SINE Alu 1 289 -23 279 133 0 0 chr11 125857041 125857086 -24926467 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 295 271 62 10 chr11 125857086 125857182 -24926371 + MIR SINE MIR 138 238 -24 749 242 67 77 chr11 125857420 125857717 -24925836 + L2 LINE L2 3020 3313 0 6397 60 4 3 chr11 125858221 125859000 -24924553 - LTR17 LTR ERV1 0 780 1 611 244 286 7 chr11 125859139 125859422 -24924131 - L3 LINE CR1 -30 1547 1186 262 275 12 12 chr11 125859555 125859635 -24923918 - MIR3 SINE MIR -48 160 81 1985 132 0 0 chr11 125859855 125860120 -24923433 - AluSq SINE Alu -48 265 1 1275 241 21 72 chr11 125860127 125860612 -24922941 + L2 LINE L2 2850 3309 -4 2319 161 48 7 chr11 125860943 125861358 -24922195 + MSTB1 LTR MaLR 1 432 0 1857 204 47 33 chr11 125861399 125861889 -24921664 + MLT1D LTR MaLR 1 497 -8 351 228 29 103 chr11 125862508 125862644 -24920909 - MIR SINE MIR -41 221 96 362 278 13 26 chr11 125862658 125862809 -24920744 + MLT1I LTR MaLR 1 149 -260 2232 114 3 0 chr11 125862812 125863110 -24920443 - AluSg SINE Alu -10 300 2 2227 132 0 13 chr11 125863115 125863426 -24920127 - AluSx SINE Alu -5 307 1 478 235 156 11 chr11 125863435 125863614 -24919939 + MLT1I LTR MaLR 198 402 -7 380 240 207 8 chr11 125863618 125863739 -24919814 + MIR SINE MIR 53 197 -65 2241 110 3 3 chr11 125863749 125864041 -24919512 - AluSx SINE Alu -14 298 7 421 294 98 6 chr11 125864370 125864533 -24919020 + MIR SINE MIR 55 232 -30 201 284 136 0 chr11 125864581 125864669 -24918884 + MIR3 SINE MIR 84 183 -25 578 180 20 0 chr11 125866099 125866199 -24917354 - MER5A DNA MER1_type -84 105 4 1092 35 69 0 chr11 125866350 125866495 -24917058 - L1PA4 LINE L1 0 6155 6001 2095 108 0 7 chr11 125866561 125866838 -24916715 + AluSx SINE Alu 1 275 -37 252 0 0 0 chr11 125866842 125866870 -24916683 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 312 302 0 57 chr11 125866872 125866978 -24916575 - MIR SINE MIR -55 153 54 1995 149 0 14 chr11 125867056 125867352 -24916201 + AluJo SINE Alu 1 292 -20 729 246 63 11 chr11 125867393 125867568 -24915985 + MIR SINE MIR 20 203 -59 420 118 0 0 chr11 125867625 125867693 -24915860 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 207 200 0 22 chr11 125867735 125867780 -24915773 + L2 LINE L2 3207 3250 -22 413 265 13 26 chr11 125867780 125867931 -24915622 - MER117 DNA MER1_type -36 161 13 260 373 24 24 chr11 125868012 125868138 -24915415 + L2 LINE L2 3144 3269 -3 2606 191 27 37 chr11 125868335 125868899 -24914654 + MER74A LTR ERVL 1 558 0 3188 118 26 43 chr11 125868951 125869155 -24914398 + L1MA4 LINE L1 5728 5934 -366 234 0 0 0 chr11 125869155 125869181 -24914372 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3188 118 26 43 chr11 125869181 125869381 -24914172 + L1MA4 LINE L1 5934 6122 -178 2146 132 0 3 chr11 125869381 125869685 -24913868 + AluSx SINE Alu 1 303 -9 3188 118 26 43 chr11 125869685 125869855 -24913698 + L1MA4 LINE L1 6122 6293 -7 2421 94 3 3 chr11 125871672 125871979 -24911574 + AluSx SINE Alu 1 307 -5 656 200 39 83 chr11 125871985 125872215 -24911338 + MER61A LTR ERV1 1 220 -123 288 0 0 0 chr11 125872315 125872347 -24911206 + (T)n Simple_repeat Simple_repeat 1 32 0 216 0 0 0 chr11 125872401 125872425 -24911128 + (T)n Simple_repeat Simple_repeat 1 24 0 238 246 109 51 chr11 125873083 125873221 -24910332 + L2 LINE L2 3083 3228 -85 343 239 130 0 chr11 125873403 125873495 -24910058 + L2 LINE L2 3209 3312 -1 582 246 208 0 chr11 125873536 125873743 -24909810 - MIR SINE MIR -11 251 5 765 262 74 9 chr11 125877431 125877660 -24905893 - MIR SINE MIR -6 256 13 192 40 0 0 chr11 125877946 125877971 -24905582 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 193 312 203 0 chr11 125879157 125879295 -24904258 - MIR3 SINE MIR -23 185 20 690 139 0 69 chr11 125879544 125879688 -24903865 + AluSx SINE Alu 26 159 -153 279 255 89 37 chr11 125880081 125880206 -24903347 + MIR SINE MIR 22 154 -58 340 246 119 8 chr11 125880465 125880591 -24902962 - MIR SINE MIR 0 262 123 1001 98 8 0 chr11 125880591 125880723 -24902830 - AluSg/x SINE Alu -16 296 164 414 57 0 0 chr11 125881109 125881162 -24902391 + (TG)n Simple_repeat Simple_repeat 1 53 0 237 304 179 18 chr11 125881832 125881944 -24901609 - MIR3 SINE MIR -37 171 42 209 77 0 0 chr11 125882258 125882284 -24901269 - L2 LINE L2 -25 3247 3222 2033 75 8 8 chr11 125882417 125882682 -24900871 - AluSp SINE Alu -48 265 1 271 170 0 4 chr11 125882928 125882983 -24900570 - Alu SINE Alu -11 291 248 755 303 35 16 chr11 125883390 125883644 -24899909 - MIR SINE MIR 0 262 4 246 116 0 0 chr11 125884388 125884431 -24899122 + (GA)n Simple_repeat Simple_repeat 1 43 0 181 306 9 93 chr11 125885414 125885522 -24898031 + L2 LINE L2 3155 3253 -19 458 338 15 0 chr11 125885871 125886004 -24897549 - L2 LINE L2 -1 3271 3137 342 339 55 6 chr11 125886431 125886596 -24896957 - MIR SINE MIR -88 174 2 315 351 34 12 chr11 125886675 125886865 -24896688 - MIR SINE MIR -57 205 13 511 291 16 65 chr11 125887078 125887174 -24896379 + L2 LINE L2 3015 3114 -199 2016 141 7 0 chr11 125887174 125887480 -24896073 - AluSq SINE Alu 0 308 1 511 291 16 65 chr11 125887480 125887629 -24895924 + L2 LINE L2 3114 3249 -64 252 346 92 23 chr11 125889109 125889239 -24894314 - L3b LINE CR1 -26 1557 1419 228 311 67 34 chr11 125889258 125889377 -24894176 - L2 LINE L2 0 3313 3191 710 286 42 14 chr11 125889687 125889904 -24893649 + MIR SINE MIR 27 249 -13 1766 169 7 13 chr11 125890020 125890140 -24893413 + AluJo SINE Alu 1 120 -192 204 0 83 0 chr11 125890140 125890176 -24893377 + A-rich Low_complexity Low_complexity 1 39 0 1766 169 7 13 chr11 125890176 125890363 -24893190 + AluJo SINE Alu 120 306 -6 456 323 70 58 chr11 125891052 125891583 -24891970 - L2 LINE L2 -1 3271 2734 285 256 49 12 chr11 125891606 125891688 -24891865 - L2 LINE L2 -941 2373 2289 407 276 13 70 chr11 125892758 125892800 -24890753 - MIR SINE MIR -21 241 198 3342 146 33 8 chr11 125892800 125892964 -24890589 + MER1A DNA MER1_type 1 159 -2541 198 0 0 0 chr11 125892964 125892986 -24890567 + (CAG)n Simple_repeat Simple_repeat 2 23 0 3342 146 33 8 chr11 125892986 125893335 -24890218 + MER1A DNA MER1_type 159 527 0 407 276 13 70 chr11 125893335 125893448 -24890105 - MIR SINE MIR -64 198 95 872 224 13 48 chr11 125893492 125893720 -24889833 + MIR SINE MIR 36 255 -7 1252 277 42 49 chr11 125893728 125894287 -24889266 - L2 LINE L2 -5 3308 2739 4086 164 44 14 chr11 125894287 125894658 -24888895 + L1MB7 LINE L1 5218 5576 -608 1952 96 0 8 chr11 125894658 125894909 -24888644 + AluSc SINE Alu 46 294 -15 4086 164 44 14 chr11 125894909 125895383 -24888170 + L1MB7 LINE L1 5576 6089 -95 1502 126 0 4 chr11 125895392 125895630 -24887923 - Tigger5 DNA MER2_type -2 2321 2085 230 134 0 119 chr11 125895708 125895775 -24887778 + L1MB7 LINE L1 6112 6170 -14 324 200 0 0 chr11 125895856 125895926 -24887627 + (CA)n Simple_repeat Simple_repeat 1 70 0 2859 116 16 25 chr11 125895939 125896371 -24887182 - MSTA LTR MaLR 0 428 1 1665 153 0 0 chr11 125896380 125896642 -24886911 + MER7A DNA MER2_type 15 274 -72 292 258 0 0 chr11 125896826 125896888 -24886665 + MER7A DNA MER2_type 274 335 -1 241 320 13 0 chr11 125896888 125896966 -24886587 + (CA)n Simple_repeat Simple_repeat 2 80 0 436 277 0 0 chr11 125896999 125897093 -24886460 - L2 LINE L2 -564 2750 2657 717 287 122 36 chr11 125897093 125897587 -24885966 - MLT1H LTR MaLR -13 536 1 280 244 122 0 chr11 125898118 125898200 -24885353 - L2 LINE L2 -14 3258 3167 22 0 0 0 chr11 125900152 125900174 -24883379 + AT_rich Low_complexity Low_complexity 1 22 0 244 354 0 0 chr11 125900757 125900822 -24882731 + MIR SINE MIR 9 73 -189 255 360 88 8 chr11 125901747 125901872 -24881681 - L2 LINE L2 0 3313 3179 212 350 24 24 chr11 125901916 125902039 -24881514 - MIR SINE MIR -40 222 100 191 86 0 29 chr11 125902565 125902600 -24880953 + (TC)n Simple_repeat Simple_repeat 2 35 0 429 77 0 31 chr11 125902840 125902905 -24880648 - Alu SINE Alu -6 306 244 1802 168 11 48 chr11 125903693 125904044 -24879509 - L1MC1 LINE L1 0 6333 5996 339 271 80 126 chr11 125904297 125904602 -24878951 - L1M2 LINE L1 -5443 1406 1169 254 355 91 0 chr11 125904692 125904813 -24878740 + MIR3 SINE MIR 28 159 -49 2627 58 0 0 chr11 125904973 125905284 -24878269 + AluY SINE Alu 1 311 0 308 269 156 6 chr11 125905553 125905720 -24877833 - MIR SINE MIR -15 247 56 237 65 0 0 chr11 125906368 125906399 -24877154 + (GGA)n Simple_repeat Simple_repeat 1 31 0 236 255 0 0 chr11 125906686 125906737 -24876816 + L1MB7 LINE L1 5699 5749 -2059 2431 188 28 7 chr11 125908087 125908545 -24875008 + L1MB7 LINE L1 5648 6115 -69 796 170 106 14 chr11 125908548 125908689 -24874864 + FRAM SINE Alu 1 154 -22 267 104 0 21 chr11 125908725 125908773 -24874780 + L1MB7 LINE L1 6122 6168 -16 1988 119 53 3 chr11 125909281 125909566 -24873987 - AluSx SINE Alu -13 299 1 2564 47 0 7 chr11 125910255 125910556 -24872997 + AluY SINE Alu 1 299 -12 273 252 24 79 chr11 125911428 125911555 -24871998 - MIR3 SINE MIR -84 124 5 394 299 6 78 chr11 125912336 125912503 -24871050 + MER5B DNA MER1_type 13 167 -11 341 22 22 0 chr11 125912708 125912754 -24870799 + (CA)n Simple_repeat Simple_repeat 2 48 0 1777 150 0 7 chr11 125912758 125913044 -24870509 - AluSx SINE Alu -28 284 1 189 0 0 0 chr11 125913403 125913424 -24870129 + (T)n Simple_repeat Simple_repeat 1 21 0 223 236 125 42 chr11 125914649 125914721 -24868832 - L2 LINE L2 -1 3271 3194 565 316 151 22 chr11 125914859 125915727 -24867826 - L2 LINE L2 0 3313 2331 2082 138 3 0 chr11 125916232 125916537 -24867016 - AluSx SINE Alu -6 306 1 246 128 0 0 chr11 125916558 125916597 -24866956 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 189 176 0 0 chr11 125916717 125916751 -24866802 - MIR SINE MIR -76 132 99 2288 112 3 3 chr11 125917044 125917356 -24866197 + AluSx SINE Alu 1 312 0 26 30 0 0 chr11 125917693 125917726 -24865827 + AT_rich Low_complexity Low_complexity 1 33 0 393 337 176 33 chr11 125918032 125918430 -24865123 - L2 LINE L2 -5 3308 2854 339 294 62 40 chr11 125919101 125919373 -24864180 - L1M4 LINE L1 -1072 5074 4797 938 288 73 46 chr11 125919381 125920093 -24863460 - L1M4 LINE L1 -1816 4330 3600 319 252 167 78 chr11 125920168 125920616 -24862937 - L1M4 LINE L1 -2664 3482 2995 547 252 99 53 chr11 125920637 125920959 -24862594 + L1MD1 LINE L1 2696 3032 -3114 405 260 123 26 chr11 125920961 125921188 -24862365 + L1MD1 LINE L1 3112 3360 -2786 926 260 94 21 chr11 125921209 125921642 -24861911 + L1MD1 LINE L1 5437 5906 -336 21 0 0 0 chr11 125921868 125921889 -24861664 + AT_rich Low_complexity Low_complexity 1 21 0 2314 103 3 0 chr11 125921939 125922240 -24861313 + AluSx SINE Alu 1 302 -10 189 0 0 0 chr11 125922420 125922441 -24861112 + (A)n Simple_repeat Simple_repeat 1 21 0 2180 147 20 15 chr11 125923781 125924122 -24859431 + MER2 DNA MER2_type 1 343 -1 515 183 67 39 chr11 125924296 125924400 -24859153 + AluSc SINE Alu 106 212 -97 * 677 215 0 8 chr11 125924393 125924514 -24859039 + AluJb SINE Alu 176 295 -17 509 170 21 0 chr11 125924794 125924888 -24858665 + L1MB3 LINE L1 6078 6173 -10 867 233 66 40 chr11 125926453 125926830 -24856723 + L1ME3 LINE L1 3862 4248 -1898 1310 150 9 5 chr11 125926847 125927060 -24856493 - AluJo SINE Alu -13 299 86 246 235 39 0 chr11 125927117 125927168 -24856385 + Tigger5 DNA MER2_type 3 55 -2268 456 169 0 0 chr11 125927178 125927255 -24856298 + Tigger5 DNA MER2_type 2237 2313 -10 379 169 56 49 chr11 125927270 125927412 -24856141 + L1ME3 LINE L1 4312 4454 -1692 1248 258 93 66 chr11 125927415 125928324 -24855229 + L1ME3 LINE L1 5109 6046 -116 404 146 0 0 chr11 125928439 125928494 -24855059 + FRAM/FAM SINE Alu 25 79 -97 2436 31 42 0 chr11 125928594 125928882 -24854671 - AluY SINE Alu -11 300 1 329 288 50 89 chr11 125929001 125929282 -24854271 - L2 LINE L2 -816 2498 2229 200 241 56 0 chr11 125930093 125930147 -24853406 - L2 LINE L2 -3 3269 3213 992 230 81 34 chr11 125930229 125930551 -24853002 - MER46C DNA MER2_type 0 338 2 32 43 0 0 chr11 125931069 125931115 -24852438 + AT_rich Low_complexity Low_complexity 1 46 0 361 226 151 28 chr11 125931124 125931230 -24852323 - MER103 DNA DNA -47 119 1 195 42 0 0 chr11 125931894 125931918 -24851635 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 235 345 18 44 chr11 125932280 125932393 -24851160 - MIR SINE MIR -146 116 7 2448 142 17 98 chr11 125932915 125933387 -24850166 + Tigger2a DNA MER2_type 1 434 0 497 292 93 13 chr11 125933387 125933613 -24849940 + MIR SINE MIR 15 258 -4 22 56 0 0 chr11 125934133 125934169 -24849384 + AT_rich Low_complexity Low_complexity 1 36 0 1762 124 40 4 chr11 125934435 125934710 -24848843 - MER47A DNA MER2_type 0 366 82 803 161 0 0 chr11 125936063 125936181 -24847372 + FLAM_C SINE Alu 1 118 -25 2287 92 0 3 chr11 125936353 125936646 -24846907 + AluSc SINE Alu 1 292 -17 27 0 0 0 chr11 125936859 125936886 -24846667 + AT_rich Low_complexity Low_complexity 1 27 0 331 241 55 55 chr11 125937016 125937161 -24846392 + MIR SINE MIR 118 262 0 751 257 53 18 chr11 125938552 125938778 -24844775 + MIR SINE MIR 17 250 -12 26 30 0 0 chr11 125938812 125938845 -24844708 + AT_rich Low_complexity Low_complexity 1 33 0 273 328 126 8 chr11 125938850 125938969 -24844584 + MIR3 SINE MIR 31 163 -45 321 160 0 0 chr11 125939279 125939329 -24844224 - L2 LINE L2 -2 3270 3221 497 350 39 0 chr11 125939548 125939728 -24843825 + MIR3 SINE MIR 15 201 -7 3594 141 89 2 chr11 125940862 125941444 -24842109 - MER41B LTR ERV1 -2 633 1 2235 103 3 0 chr11 125942243 125942534 -24841019 + AluSg SINE Alu 1 292 -18 2865 123 8 39 chr11 125942738 125942806 -24840747 - L1MB3 LINE L1 0 6183 6114 2111 141 6 59 chr11 125942806 125943161 -24840392 + MER1B DNA MER1_type 2 337 0 2865 123 8 39 chr11 125943161 125943580 -24839973 - L1MB3 LINE L1 -69 6114 5711 1891 166 3 10 chr11 125943602 125943915 -24839638 - AluJb SINE Alu -1 311 1 892 164 0 0 chr11 125944085 125944213 -24839340 + AluJo SINE Alu 2 129 -173 2848 127 31 2 chr11 125944248 125944664 -24838889 + MSTA LTR MaLR 1 428 0 3304 137 19 0 chr11 125944665 125945190 -24838363 + MSTA-int LTR MaLR 2 536 -1115 287 146 21 0 chr11 125945188 125945236 -24838317 + MSTA-int LTR MaLR 755 803 -848 * 3074 116 31 0 chr11 125945256 125945671 -24837882 + MSTA LTR MaLR 1 428 0 838 238 24 0 chr11 125945671 125945835 -24837718 + AluJo SINE Alu 138 305 -7 244 263 0 18 chr11 125946430 125946487 -24837066 - L2 LINE L2 -4 3268 3213 274 315 167 0 chr11 125946901 125947117 -24836436 - L2 LINE L2 -867 2447 2196 192 385 0 12 chr11 125948307 125948390 -24835163 + MIR SINE MIR 20 101 -161 225 290 107 38 chr11 125948559 125948690 -24834863 + MIR SINE MIR 105 244 -18 301 172 0 2 chr11 125948883 125948936 -24834617 + MLT1J LTR MaLR 84 168 -315 802 135 0 0 chr11 125949003 125949114 -24834439 + FLAM_C SINE Alu 21 131 -12 260 197 61 0 chr11 125950488 125950554 -24832999 + L1MA4 LINE L1 6226 6295 -5 217 352 40 57 chr11 125950851 125951027 -24832526 + MIR SINE MIR 25 197 -65 39 38 0 0 chr11 125951057 125951110 -24832443 + AT_rich Low_complexity Low_complexity 1 53 0 1524 168 47 16 chr11 125951493 125951685 -24831868 + L1MB4 LINE L1 5712 5897 -283 2259 147 24 0 chr11 125951685 125952025 -24831528 - MER7A DNA MER2_type 0 346 1 1524 168 47 16 chr11 125952025 125952253 -24831300 + L1MB4 LINE L1 5897 6180 0 22565 150 24 15 chr11 125952706 125956290 -24827263 + L1M1 LINE L1 13 3668 -3897 2769 20 0 0 chr11 125956290 125956590 -24826963 + AluY SINE Alu 1 300 -11 22565 150 24 15 chr11 125956590 125957864 -24825689 + L1M1 LINE L1 3668 4928 -2637 1313 113 39 58 chr11 125957914 125958171 -24825382 + L1MA3 LINE L1 6054 6305 0 274 338 45 0 chr11 125958339 125958496 -24825057 + L1MC4a LINE L1 5254 5417 -2391 2320 118 0 6 chr11 125958581 125958895 -24824658 + AluSx SINE Alu 1 312 0 1008 209 46 122 chr11 125959086 125959479 -24824074 - MLT1A2 LTR MaLR 0 374 12 257 290 43 32 chr11 125959492 125959678 -24823875 + L1M4 LINE L1 4885 5072 -1074 2485 80 3 0 chr11 125959726 125960028 -24823525 - AluSp SINE Alu -10 303 1 1902 230 160 8 chr11 125960029 125960542 -24823011 + MLT1G1 LTR MaLR 5 595 0 227 276 176 33 chr11 125960848 125961058 -24822495 + L1MC4a LINE L1 5976 6215 -1593 1282 142 5 14 chr11 125961365 125961583 -24821970 - L1MA7 LINE L1 -144 6147 5932 2309 93 63 44 chr11 125961715 125962081 -24821472 + THE1C LTR MaLR 1 373 -2 416 180 0 22 chr11 125962141 125962230 -24821323 + MLT2F LTR ERVL 1 87 -576 1401 249 78 91 chr11 125962267 125962962 -24820591 + MER21B LTR ERV1 24 709 -154 1201 258 88 60 chr11 125962969 125963534 -24820019 + MLT2F LTR ERVL 83 663 0 357 332 70 16 chr11 125963858 125964114 -24819439 + L1M4 LINE L1 2232 2501 -3645 31 44 0 0 chr11 125964406 125964451 -24819102 + AT_rich Low_complexity Low_complexity 1 45 0 318 330 63 5 chr11 125965200 125965391 -24818162 + L1M4 LINE L1 2773 2974 -3172 3463 249 77 82 chr11 125965394 125966563 -24816990 + L1MEc LINE L1 37 1210 -5186 1375 201 65 0 chr11 125966563 125966842 -24816711 + AluJo SINE Alu 1 297 -15 1747 136 14 35 chr11 125966844 125967131 -24816422 + AluJo SINE Alu 1 281 -31 3463 249 77 82 chr11 125967131 125967872 -24815681 + L1MEc LINE L1 1211 1941 -4455 260 278 90 67 chr11 125967954 125968310 -24815243 + L1MEc LINE L1 3398 3767 -2448 2016 144 0 7 chr11 125968310 125968615 -24814938 + AluSx SINE Alu 6 308 -4 260 278 90 67 chr11 125968615 125968693 -24814860 + L1MEc LINE L1 3767 3842 -2373 330 304 96 78 chr11 125968829 125969059 -24814494 - L2 LINE L2 -36 3236 3003 263 328 158 0 chr11 125969159 125969336 -24814217 - L2 LINE L2 -560 2754 2550 944 141 180 39 chr11 125969641 125969847 -24813706 + MER46A DNA MER2_type 2 236 0 2224 126 0 0 chr11 125970095 125970397 -24813156 + AluSx SINE Alu 1 302 -10 1999 51 0 4 chr11 125972779 125973014 -24810539 - AluSg1 SINE Alu -75 234 1 271 301 183 27 chr11 125974082 125974344 -24809209 - L2 LINE L2 -3 3310 3008 798 209 107 19 chr11 125974391 125974597 -24808956 + MER58A DNA MER1_type 1 224 0 22 35 0 0 chr11 125974858 125974887 -24808666 + AT_rich Low_complexity Low_complexity 1 29 0 575 210 0 77 chr11 125975063 125975206 -24808347 - FLAM_A SINE Alu 0 133 2 486 285 76 62 chr11 125975430 125975784 -24807769 + L2 LINE L2 2544 2902 -412 490 305 124 9 chr11 125975929 125976155 -24807398 + MIR SINE MIR 1 252 -10 184 273 0 0 chr11 125976124 125976168 -24807385 + L2 LINE L2 3226 3269 -3 * 302 377 82 0 chr11 125976271 125976417 -24807136 - MIR3 SINE MIR -21 187 30 251 207 17 0 chr11 125976512 125976570 -24806983 - MER112 DNA MER1_type -128 132 74 2365 105 0 3 chr11 125977059 125977372 -24806181 + AluSx SINE Alu 1 312 0 189 0 0 0 chr11 125977775 125977796 -24805757 + (A)n Simple_repeat Simple_repeat 1 21 0 202 309 29 0 chr11 125978380 125978448 -24805105 - L2 LINE L2 0 3313 3244 506 256 205 23 chr11 125979437 125979788 -24803765 + L1MC4 LINE L1 7542 7956 -86 511 241 150 0 chr11 125981109 125981296 -24802257 + MER58C DNA MER1_type 1 215 0 737 138 0 0 chr11 125981335 125981444 -24802109 + FLAM_C SINE Alu 25 133 -10 234 0 0 0 chr11 125981551 125981577 -24801976 + (A)n Simple_repeat Simple_repeat 1 26 0 594 216 170 18 chr11 125981831 125982002 -24801551 - MER3 DNA MER1_type -4 205 9 218 227 0 0 chr11 125982420 125982464 -24801089 + A-rich Low_complexity Low_complexity 1 44 0 303 113 0 0 chr11 125983531 125983584 -24799969 + (GGA)n Simple_repeat Simple_repeat 2 54 0 225 200 0 20 chr11 125985235 125985285 -24798268 + (TG)n Simple_repeat Simple_repeat 2 50 0 221 132 0 19 chr11 125985936 125985989 -24797564 + (TA)n Simple_repeat Simple_repeat 1 52 0 183 139 0 0 chr11 125986885 125986921 -24796632 + (TA)n Simple_repeat Simple_repeat 1 36 0 198 171 26 40 chr11 125987201 125987277 -24796276 + CT-rich Low_complexity Low_complexity 4 78 0 204 125 0 0 chr11 125987506 125987538 -24796015 + (A)n Simple_repeat Simple_repeat 1 32 0 212 130 22 0 chr11 125987798 125987844 -24795709 + T-rich Low_complexity Low_complexity 5 51 0 316 213 28 37 chr11 125988065 125988173 -24795380 - L2 LINE L2 -19 3294 3188 306 275 43 7 chr11 125989127 125989265 -24794288 + CT-rich Low_complexity Low_complexity 3 145 0 210 37 0 0 chr11 125989452 125989479 -24794074 + (CA)n Simple_repeat Simple_repeat 2 28 0 659 328 69 43 chr11 125990339 125990977 -24792576 + L2 LINE L2 2629 3272 0 209 69 0 0 chr11 125991959 125991988 -24791565 - MIR SINE MIR -62 146 118 2430 56 0 7 chr11 125993089 125993402 -24790151 + AluSp SINE Alu 1 311 0 1851 99 33 0 chr11 125993984 125994257 -24789296 - L1PA11 LINE L1 -1 6173 5892 180 248 64 80 chr11 125994385 125994510 -24789043 + MIR3 SINE MIR 86 208 0 3022 148 46 43 chr11 125995034 125995643 -24787910 + LTR36 LTR ERV1 1 611 0 723 293 104 8 chr11 125995804 125996197 -24787356 + L2 LINE L2 1497 1927 -1387 4787 167 37 25 chr11 125996227 125997071 -24786482 - MER21B LTR ERV1 -9 854 1 294 292 169 34 chr11 125997076 125997312 -24786241 + L2 LINE L2 1940 2207 -1107 180 0 0 0 chr11 125997624 125997644 -24785909 + (TTA)n Simple_repeat Simple_repeat 2 21 0 424 226 186 31 chr11 125998167 125998317 -24785236 + L2 LINE L2 2799 2924 -389 180 77 0 0 chr11 125998317 125998343 -24785210 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 424 226 186 31 chr11 125998343 125998427 -24785126 + L2 LINE L2 2924 3059 -254 1061 210 72 11 chr11 125998427 125998745 -24784808 + MSTD LTR MaLR 1 394 -2 2190 113 0 0 chr11 125998771 125999080 -24784473 + AluSx SINE Alu 1 309 0 237 338 76 38 chr11 125999088 125999245 -24784308 + L2 LINE L2 3117 3279 -34 287 179 49 57 chr11 125999328 125999451 -24784102 - L1MC5 LINE L1 -34 7927 7806 387 276 57 43 chr11 125999503 125999782 -24783771 - L1MC5 LINE L1 -172 7789 7507 2557 59 3 0 chr11 126000277 126000580 -24782973 + AluY SINE Alu 1 304 -7 268 207 30 118 chr11 126000647 126000782 -24782771 - L1MEc LINE L1 -6261 135 13 598 239 23 40 chr11 126000785 126000961 -24782592 - MIR SINE MIR -71 191 19 261 269 40 67 chr11 126001419 126001568 -24781985 + L2 LINE L2 1728 1872 -1442 356 269 119 38 chr11 126001572 126002041 -24781512 - L1M4 LINE L1 -2990 3156 2650 1843 154 48 66 chr11 126002286 126002565 -24780988 - MLT1B LTR MaLR 0 390 119 2053 130 30 7 chr11 126002565 126002865 -24780688 - AluSx SINE Alu -5 307 1 1843 154 48 66 chr11 126002865 126002980 -24780573 - MLT1B LTR MaLR -271 119 3 2185 103 0 0 chr11 126005346 126005637 -24777916 + AluSx SINE Alu 1 291 -21 228 224 192 56 chr11 126007256 126007381 -24776172 + MIR3 SINE MIR 4 145 -63 208 250 0 49 chr11 126007423 126007567 -24775986 + (TTAGGG)n Simple_repeat Simple_repeat 5 141 0 186 143 0 0 chr11 126007600 126007635 -24775918 + (TTAGGG)n Simple_repeat Simple_repeat 3 37 0 443 206 26 132 chr11 126008618 126008731 -24774822 + MIR SINE MIR 40 123 -139 2143 113 3 0 chr11 126008731 126009040 -24774513 + AluSx SINE Alu 2 311 -1 443 206 26 132 chr11 126009040 126009124 -24774429 + MIR SINE MIR 123 214 -48 222 180 120 0 chr11 126009587 126009637 -24773916 - L2 LINE L2 -4 3309 3254 2541 161 39 2 chr11 126009818 126010229 -24773324 - MSTB LTR MaLR 0 426 1 320 164 15 0 chr11 126010401 126010468 -24773085 + (TG)n Simple_repeat Simple_repeat 1 68 0 197 320 150 20 chr11 126011123 126011276 -24772277 - L2 LINE L2 -168 3104 2932 308 324 14 34 chr11 126011841 126011989 -24771564 - L2 LINE L2 -10 3303 3159 250 304 47 94 chr11 126013200 126013391 -24770162 - L2 LINE L2 -180 3092 2911 1182 169 14 0 chr11 126013817 126014030 -24769523 + AluJo SINE Alu 85 300 -12 496 253 90 96 chr11 126014170 126014290 -24769263 + L1MC/D LINE L1 5260 5379 -867 932 276 105 10 chr11 126014290 126014700 -24768853 + MLT1J2 LTR MaLR 1 449 -1 496 253 90 96 chr11 126014700 126015084 -24768469 + L1MC/D LINE L1 5379 5775 -471 2132 99 23 0 chr11 126016248 126016550 -24767003 - AluSc SINE Alu 0 309 1 1894 126 37 0 chr11 126016553 126016847 -24766706 - AluSg SINE Alu -5 305 1 4465 258 71 77 chr11 126018310 126021596 -24761957 - L1ME3A LINE L1 -219 5934 2659 2099 181 8 6 chr11 126021596 126021960 -24761593 - MLT1A1 LTR MaLR 0 365 1 4465 258 71 77 chr11 126021960 126022063 -24761490 - L1ME3A LINE L1 -3494 2659 2557 387 245 49 0 chr11 126022236 126022338 -24761215 - LTR16C LTR ERVL -40 451 345 388 295 90 31 chr11 126022410 126022854 -24760699 - L1ME3A LINE L1 -4573 1737 1268 418 194 68 19 chr11 126022858 126022961 -24760592 + MIR SINE MIR 152 259 -3 264 222 16 0 chr11 126022983 126023046 -24760507 + LTR50 LTR ERVL 1 64 -731 396 261 0 22 chr11 126023053 126023145 -24760408 - L1ME3A LINE L1 -5025 1094 1005 342 254 109 0 chr11 126023170 126023308 -24760245 + LTR50 LTR ERVL 82 234 -561 324 222 218 64 chr11 126023448 126023714 -24759839 + LTR50 LTR ERVL 481 787 -8 503 286 19 35 chr11 126023725 126023984 -24759569 - L1MEd LINE L1 -4911 1208 954 1027 98 27 2 chr11 126025214 126025368 -24758185 - L1MC/D LINE L1 -754 5551 5414 4537 84 14 6 chr11 126025368 126025990 -24757563 + L1MA3 LINE L1 5430 6056 -249 2084 99 18 0 chr11 126025990 126026273 -24757280 + AluSx SINE Alu 1 288 -24 189 0 0 0 chr11 126026374 126026395 -24757158 + (A)n Simple_repeat Simple_repeat 1 21 0 192 302 105 23 chr11 126026981 126027067 -24756486 + L3b LINE CR1 1340 1432 -151 311 223 128 20 chr11 126027296 126027442 -24756111 + MIR SINE MIR 46 205 -57 360 259 113 29 chr11 126028484 126028623 -24754930 + MIR SINE MIR 4 152 -62 2031 126 0 19 chr11 126028774 126029083 -24754470 - AluSx SINE Alu -9 303 1 186 43 0 0 chr11 126029932 126029955 -24753598 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 1156 80 31 12 chr11 126032122 126032285 -24751268 + AluSq SINE Alu 37 202 -111 789 123 110 27 chr11 126032294 126032440 -24751113 + AluSg/x SINE Alu 154 311 -1 358 261 163 13 chr11 126032448 126032601 -24750952 + MIR SINE MIR 47 222 -40 315 271 165 18 chr11 126032846 126033016 -24750537 - MARNA DNA Mariner -122 464 270 183 42 0 0 chr11 126033314 126033338 -24750215 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 187 246 0 53 chr11 126033413 126033470 -24750083 + MIR SINE MIR 22 75 -187 180 77 0 0 chr11 126033750 126033776 -24749777 + (TC)n Simple_repeat Simple_repeat 2 27 0 537 220 147 0 chr11 126034245 126034395 -24749158 - MIR3 SINE MIR -7 201 30 443 291 37 22 chr11 126034797 126034931 -24748622 - L2 LINE L2 0 3272 3137 264 326 69 77 chr11 126035196 126035308 -24748245 + MIR SINE MIR 3 114 -148 1410 204 14 7 chr11 126035308 126035588 -24747965 + AluJo SINE Alu 1 282 -30 195 42 0 0 chr11 126035597 126035621 -24747932 + (CAA)n Simple_repeat Simple_repeat 3 26 0 264 326 69 77 chr11 126035621 126035749 -24747804 + MIR SINE MIR 122 251 -11 181 258 48 16 chr11 126035779 126035841 -24747712 - L2 LINE L2 -534 2780 2717 21 36 0 0 chr11 126037478 126037506 -24746047 + AT_rich Low_complexity Low_complexity 1 28 0 515 260 83 6 chr11 126038449 126038618 -24744935 + MER112 DNA MER1_type 28 209 -51 247 261 76 33 chr11 126038670 126038762 -24744791 - L2 LINE L2 -4 3309 3214 200 256 0 0 chr11 126038795 126038838 -24744715 + (TG)n Simple_repeat Simple_repeat 2 44 0 301 308 71 59 chr11 126039755 126039924 -24743629 + L2 LINE L2 3137 3307 -6 * 359 191 202 0 chr11 126039908 126040002 -24743551 - MIR SINE MIR 0 262 150 563 92 0 0 chr11 126040142 126040218 -24743335 + MADE1 DNA Mariner 1 76 -4 239 290 32 11 chr11 126040354 126040447 -24743106 + MIR SINE MIR 48 142 -120 282 321 0 52 chr11 126040993 126041127 -24742426 + L2 LINE L2 2721 2847 -467 261 321 92 18 chr11 126041142 126041251 -24742302 + L2 LINE L2 3151 3267 -5 1785 164 3 3 chr11 126041447 126041751 -24741802 - AluSx SINE Alu -8 304 1 185 268 0 98 chr11 126042750 126042832 -24740721 + L2 LINE L2 3153 3226 -46 1372 175 8 0 chr11 126044429 126044701 -24738852 + AluJb SINE Alu 34 307 0 288 77 0 0 chr11 126044930 126044969 -24738584 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 214 287 0 81 chr11 126045974 126046061 -24737492 + MIR SINE MIR 107 186 -76 2400 61 3 6 chr11 126047363 126047674 -24735879 + AluY SINE Alu 1 310 -1 355 381 34 0 chr11 126047952 126048099 -24735454 - MER91A DNA MER1_type 0 196 45 2329 66 0 22 chr11 126048570 126048888 -24734665 - AluY SINE Alu 0 311 1 2888 172 6 11 chr11 126050276 126050816 -24732737 + L1MB3 LINE L1 5644 6180 -3 1603 185 0 14 chr11 126054325 126054632 -24728921 - AluJb SINE Alu 0 303 1 207 0 0 0 chr11 126054644 126054667 -24728886 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 422 301 121 19 chr11 126054882 126055088 -24728465 + MIR SINE MIR 30 256 -6 2075 108 3 7 chr11 126058572 126058867 -24724686 - AluSx SINE Alu -18 294 1 1982 135 0 10 chr11 126059797 126060101 -24723452 - AluSx SINE Alu -11 301 1 281 289 13 0 chr11 126060473 126060549 -24723004 - MIR SINE MIR -128 134 58 232 313 0 52 chr11 126060660 126060756 -24722797 - L3b LINE CR1 -192 1391 1301 210 91 0 0 chr11 126061309 126061342 -24722211 + (TTA)n Simple_repeat Simple_repeat 1 33 0 231 36 0 0 chr11 126064482 126064510 -24719043 + (TG)n Simple_repeat Simple_repeat 1 28 0 238 225 25 25 chr11 126065732 126065812 -24717741 + GA-rich Low_complexity Low_complexity 1 80 0 1463 188 0 41 chr11 126066084 126066404 -24717149 - AluJo SINE Alu -5 307 1 255 314 69 20 chr11 126066858 126066960 -24716593 - L2 LINE L2 -6 3307 3201 2160 104 0 10 chr11 126068005 126068312 -24715241 - AluJb SINE Alu -8 304 1 189 0 0 0 chr11 126068671 126068692 -24714861 + (T)n Simple_repeat Simple_repeat 1 21 0 224 236 125 42 chr11 126069917 126069989 -24713564 - L2 LINE L2 -1 3271 3194 611 309 152 24 chr11 126070127 126070996 -24712557 - L2 LINE L2 0 3313 2331 1964 141 3 0 chr11 126071501 126071806 -24711747 - AluSx SINE Alu -6 306 1 246 128 0 0 chr11 126071827 126071866 -24711687 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 191 176 0 0 chr11 126071986 126072020 -24711533 - MIR SINE MIR -76 132 99 2097 122 3 3 chr11 126072313 126072624 -24710929 + AluSx SINE Alu 1 311 -1 354 143 0 0 chr11 126072661 126072724 -24710829 + (TG)n Simple_repeat Simple_repeat 2 64 0 370 303 44 36 chr11 126073015 126073226 -24710327 - MIR SINE MIR -12 250 34 674 206 194 0 chr11 126074482 126074652 -24708901 + MER63A DNA MER1_type 4 206 -4 913 275 9 5 chr11 126074871 126075089 -24708464 - MIR SINE MIR -41 221 3 1620 219 24 24 chr11 126076203 126076577 -24706976 - MLT1A2 LTR MaLR 0 374 1 259 291 25 0 chr11 126076799 126076878 -24706675 - L1MC4 LINE L1 -1343 6699 6619 263 35 70 18 chr11 126077862 126077919 -24705634 + A-rich Low_complexity Low_complexity 1 60 0 401 183 10 59 chr11 126078555 126078686 -24704867 - L1MD3 LINE L1 -2 8040 7905 236 306 16 65 chr11 126078692 126078816 -24704737 - MIR SINE MIR -67 195 78 401 278 75 15 chr11 126080497 126080676 -24702877 + MER5B DNA MER1_type 1 178 0 198 167 0 0 chr11 126080712 126080748 -24702805 + (CA)n Simple_repeat Simple_repeat 2 37 0 815 279 31 16 chr11 126081601 126081855 -24701698 + MIR SINE MIR 1 258 -4 953 186 22 87 chr11 126084338 126084569 -24698984 + MER20 DNA MER1_type 3 218 -1 281 224 0 0 chr11 126085720 126085778 -24697775 + MIR SINE MIR 64 121 -141 194 0 39 0 chr11 126087566 126087592 -24695961 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1666 203 132 41 chr11 126088512 126088975 -24694578 + MLT1D LTR MaLR 1 505 0 369 224 24 12 chr11 126089665 126089750 -24693803 - MIR SINE MIR -63 145 60 210 233 83 0 chr11 126090189 126090249 -24693304 + L3b LINE CR1 1430 1494 -89 219 328 62 39 chr11 126091726 126091854 -24691699 + L2 LINE L2 3134 3264 -8 2269 96 0 10 chr11 126091896 126092210 -24691343 - AluSx SINE Alu -1 311 1 342 0 0 0 chr11 126092846 126092884 -24690669 + (TG)n Simple_repeat Simple_repeat 2 39 0 344 288 163 47 chr11 126094716 126094931 -24688622 - MIR SINE MIR -5 257 18 728 232 85 6 chr11 126094960 126095137 -24688416 + MIR SINE MIR 63 253 -9 262 360 72 0 chr11 126096471 126096582 -24686971 - L2 LINE L2 -29 3243 3125 291 71 0 0 chr11 126097397 126097439 -24686114 + (CA)n Simple_repeat Simple_repeat 2 43 0 3948 130 42 6 chr11 126098396 126099035 -24684518 + L1MB7 LINE L1 5513 6174 -10 237 349 106 30 chr11 126099038 126099236 -24684317 - L2 LINE L2 -15 3298 3086 202 238 161 63 chr11 126099561 126099704 -24683849 + MIR SINE MIR 28 184 -78 2028 121 3 10 chr11 126099778 126100084 -24683469 + AluSx SINE Alu 1 304 -8 454 36 0 0 chr11 126101552 126101608 -24681945 + (TTCC)n Simple_repeat Simple_repeat 2 57 0 558 168 0 0 chr11 126101608 126101721 -24681832 + CT-rich Low_complexity Low_complexity 1 113 0 2125 121 0 0 chr11 126101721 126102027 -24681526 - AluY SINE Alu -2 309 4 330 115 0 0 chr11 126102101 126102153 -24681400 + (TG)n Simple_repeat Simple_repeat 2 53 0 430 286 107 7 chr11 126102370 126102510 -24681043 - MIR3 SINE MIR -26 182 29 213 294 94 35 chr11 126103195 126103280 -24680273 - L2 LINE L2 -30 3242 3153 857 143 0 16 chr11 126103590 126103716 -24679837 + FLAM_C SINE Alu 3 126 -7 230 209 158 115 chr11 126107068 126107207 -24676346 - MIR3 SINE MIR -59 149 5 226 295 47 81 chr11 126109044 126109193 -24674360 - L2 LINE L2 -4 3268 3125 466 275 102 25 chr11 126110476 126110712 -24672841 + MIR SINE MIR 2 255 -7 361 254 74 8 chr11 126111868 126111990 -24671563 + MIR SINE MIR 72 201 -61 307 193 18 0 chr11 126112036 126112093 -24671460 + L2 LINE L2 3254 3311 -2 24 32 0 0 chr11 126113153 126113184 -24670369 + GC_rich Low_complexity Low_complexity 1 31 0 314 245 141 65 chr11 126114593 126114777 -24668776 - L2 LINE L2 -17 3296 3099 182 33 67 0 chr11 126116641 126116671 -24666882 + T-rich Low_complexity Low_complexity 2 33 0 296 44 44 0 chr11 126118259 126118304 -24665249 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 241 222 0 63 chr11 126118712 126118775 -24664778 + L2 LINE L2 3214 3272 0 463 208 94 47 chr11 126118804 126118953 -24664600 - MER69A DNA AcHobo -3 174 19 378 0 0 0 chr11 126119435 126119477 -24664076 + (TG)n Simple_repeat Simple_repeat 2 43 0 264 30 0 0 chr11 126120446 126120479 -24663074 + (T)n Simple_repeat Simple_repeat 1 33 0 180 0 0 0 chr11 126120602 126120622 -24662931 + (T)n Simple_repeat Simple_repeat 1 20 0 243 245 108 50 chr11 126121208 126121347 -24662206 + L2 LINE L2 3083 3229 -84 343 239 130 0 chr11 126121527 126121619 -24661934 + L2 LINE L2 3209 3312 -1 583 243 208 0 chr11 126121660 126121867 -24661686 - MIR SINE MIR -11 251 5 765 262 74 9 chr11 126125554 126125783 -24657770 - MIR SINE MIR -6 256 13 192 40 0 0 chr11 126126069 126126094 -24657459 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 193 312 203 0 chr11 126127280 126127418 -24656135 - MIR3 SINE MIR -23 185 20 265 262 0 0 chr11 126127555 126127616 -24655937 + MIR SINE MIR 74 134 -128 1156 138 0 0 chr11 126127618 126127777 -24655776 + AluSx SINE Alu 1 159 -153 267 266 89 37 chr11 126128170 126128295 -24655258 + MIR SINE MIR 22 154 -58 340 246 119 8 chr11 126128554 126128680 -24654873 - MIR SINE MIR 0 262 123 1001 98 8 0 chr11 126128680 126128812 -24654741 - AluSg/x SINE Alu -16 296 164 396 59 0 0 chr11 126129198 126129249 -24654304 + (TG)n Simple_repeat Simple_repeat 1 51 0 237 304 179 18 chr11 126129919 126130031 -24653522 - MIR3 SINE MIR -37 171 42 209 77 0 0 chr11 126130345 126130371 -24653182 - L2 LINE L2 -25 3247 3222 2022 79 8 8 chr11 126130504 126130769 -24652784 - AluSp SINE Alu -48 265 1 271 170 0 4 chr11 126131015 126131070 -24652483 - Alu SINE Alu -11 290 247 755 303 35 16 chr11 126131477 126131731 -24651822 - MIR SINE MIR 0 262 4 195 290 71 52 chr11 126132030 126132185 -24651368 - MIR3 SINE MIR -48 160 3 336 94 0 0 chr11 126132475 126132528 -24651025 + (GA)n Simple_repeat Simple_repeat 1 53 0 181 306 9 93 chr11 126133511 126133619 -24649934 + L2 LINE L2 3155 3253 -19 467 331 15 0 chr11 126133968 126134101 -24649452 - L2 LINE L2 -1 3271 3137 352 347 52 6 chr11 126134520 126134693 -24648860 - MIR SINE MIR -80 182 2 315 350 32 13 chr11 126134772 126134951 -24648602 - MIR SINE MIR -57 205 25 511 291 16 65 chr11 126135175 126135271 -24648282 + L2 LINE L2 3015 3114 -199 2001 145 7 0 chr11 126135271 126135577 -24647976 - AluSq SINE Alu 0 308 1 511 291 16 65 chr11 126135577 126135726 -24647827 + L2 LINE L2 3114 3249 -64 252 346 92 23 chr11 126137207 126137337 -24646216 - L3b LINE CR1 -26 1557 1419 228 311 67 34 chr11 126137356 126137475 -24646078 - L2 LINE L2 0 3313 3191 710 286 42 14 chr11 126137785 126138002 -24645551 + MIR SINE MIR 27 249 -13 1766 169 7 13 chr11 126138118 126138238 -24645315 + AluJo SINE Alu 1 120 -192 204 0 83 0 chr11 126138238 126138274 -24645279 + A-rich Low_complexity Low_complexity 1 39 0 1766 169 7 13 chr11 126138274 126138461 -24645092 + AluJo SINE Alu 120 306 -6 474 308 76 67 chr11 126139151 126139683 -24643870 - L2 LINE L2 -1 3271 2734 285 256 49 12 chr11 126139706 126139788 -24643765 - L2 LINE L2 -941 2373 2289 392 282 13 70 chr11 126140857 126140899 -24642654 - MIR SINE MIR -21 241 198 3273 154 33 8 chr11 126140899 126141063 -24642490 + MER1A DNA MER1_type 1 159 -2541 198 0 0 0 chr11 126141063 126141085 -24642468 + (CAG)n Simple_repeat Simple_repeat 2 23 0 3273 154 33 8 chr11 126141085 126141434 -24642119 + MER1A DNA MER1_type 159 527 0 392 282 13 70 chr11 126141434 126141547 -24642006 - MIR SINE MIR -64 198 95 872 224 13 48 chr11 126141591 126141819 -24641734 + MIR SINE MIR 36 255 -7 1263 275 42 49 chr11 126141827 126142386 -24641167 - L2 LINE L2 -5 3308 2739 4069 165 44 14 chr11 126142386 126142757 -24640796 + L1MB7 LINE L1 5218 5576 -608 2027 83 0 8 chr11 126142757 126143009 -24640544 + AluSc SINE Alu 46 295 -14 4069 165 44 14 chr11 126143009 126143483 -24640070 + L1MB7 LINE L1 5576 6089 -95 1478 134 0 4 chr11 126143492 126143730 -24639823 - Tigger5 DNA MER2_type -2 2321 2085 230 134 0 119 chr11 126143808 126143875 -24639678 + L1MB7 LINE L1 6112 6170 -14 360 164 0 0 chr11 126143963 126144030 -24639523 + (CA)n Simple_repeat Simple_repeat 2 68 0 2821 118 16 25 chr11 126144043 126144475 -24639078 - MSTA LTR MaLR 0 428 1 1651 157 0 0 chr11 126144484 126144746 -24638807 + MER7A DNA MER2_type 15 274 -72 292 258 0 0 chr11 126144930 126144992 -24638561 + MER7A DNA MER2_type 284 345 -1 241 320 13 0 chr11 126144992 126145070 -24638483 + (CA)n Simple_repeat Simple_repeat 2 80 0 452 266 0 0 chr11 126145103 126145197 -24638356 - L2 LINE L2 -564 2750 2657 728 287 122 36 chr11 126145197 126145691 -24637862 - MLT1H LTR MaLR -13 536 1 202 284 77 87 chr11 126145841 126146024 -24637529 - MIR3 SINE MIR -19 189 9 265 271 93 28 chr11 126146222 126146329 -24637224 - L2 LINE L2 -14 3258 3145 22 0 0 0 chr11 126148256 126148278 -24635275 + AT_rich Low_complexity Low_complexity 1 22 0 244 354 0 0 chr11 126148861 126148926 -24634627 + MIR SINE MIR 9 73 -189 255 360 88 8 chr11 126149873 126149998 -24633555 - L2 LINE L2 0 3313 3179 190 323 52 21 chr11 126150067 126150163 -24633390 - MIR SINE MIR -64 198 100 183 139 0 0 chr11 126150687 126150723 -24632830 + (TC)n Simple_repeat Simple_repeat 2 37 0 371 92 0 32 chr11 126150969 126151040 -24632513 - Alu SINE Alu 0 301 243 1772 165 11 48 chr11 126151818 126152169 -24631384 - L1MC1 LINE L1 0 6333 5996 268 355 91 0 chr11 126152817 126152938 -24630615 + MIR3 SINE MIR 28 159 -49 184 296 125 23 chr11 126153008 126153096 -24630457 + MIR SINE MIR 107 203 -59 2684 55 0 0 chr11 126153098 126153409 -24630144 + AluY SINE Alu 1 311 0 332 281 156 6 chr11 126153678 126153845 -24629708 - MIR SINE MIR -15 247 56 237 65 0 0 chr11 126154493 126154524 -24629029 + (GGA)n Simple_repeat Simple_repeat 1 31 0 317 223 47 101 chr11 126154989 126155137 -24628416 + HAL1b LINE L1 1207 1346 -2 2273 190 28 7 chr11 126156211 126156669 -24626884 + L1MB7 LINE L1 5648 6115 -69 778 143 0 17 chr11 126156694 126156813 -24626740 + FRAM SINE Alu 38 154 -22 243 104 0 21 chr11 126156849 126156897 -24626656 + L1MB7 LINE L1 6122 6168 -16 678 151 0 0 chr11 126157403 126157509 -24626044 - AluSg/x SINE Alu -10 299 194 2044 115 52 3 chr11 126157405 126157691 -24625862 - AluSx SINE Alu -12 300 1 2685 37 0 3 chr11 126158379 126158679 -24624874 + AluY SINE Alu 1 299 -12 297 251 175 66 chr11 126159495 126159678 -24623875 - MIR3 SINE MIR -1 207 5 413 299 6 78 chr11 126160459 126160626 -24622927 + MER5B DNA MER1_type 13 167 -11 392 0 21 0 chr11 126160831 126160879 -24622674 + (CA)n Simple_repeat Simple_repeat 2 50 0 2237 106 0 0 chr11 126160881 126161165 -24622388 - AluSx SINE Alu -28 284 1 1015 118 0 0 chr11 126161165 126161300 -24622253 - AluSq/x SINE Alu -177 135 1 386 331 17 39 chr11 126161553 126161731 -24621822 + MIR SINE MIR 15 188 -74 350 384 7 0 chr11 126163197 126163335 -24620218 + MIR SINE MIR 53 191 -71 315 0 0 0 chr11 126163414 126163449 -24620104 + (TG)n Simple_repeat Simple_repeat 1 35 0 2144 95 3 14 chr11 126164178 126164472 -24619081 - AluSx SINE Alu -9 303 13 616 308 5 49 chr11 126164583 126164807 -24618746 + MIR SINE MIR 49 262 0 192 40 0 0 chr11 126165574 126165599 -24617954 + (GAAA)n Simple_repeat Simple_repeat 1 25 0 471 313 34 28 chr11 126165736 126165912 -24617641 - MIR3 SINE MIR -22 186 10 633 252 66 53 chr11 126166966 126167192 -24616361 - MIR SINE MIR -26 236 8 226 405 0 0 chr11 126167449 126167533 -24616020 + L2 LINE L2 3186 3269 -3 269 248 205 17 chr11 126167699 126167816 -24615737 - MIR SINE MIR -35 227 89 1575 123 0 13 chr11 126167853 126168081 -24615472 - AluSg/x SINE Alu -2 310 86 180 0 0 0 chr11 126168086 126168106 -24615447 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 229 282 153 16 chr11 126168844 126168968 -24614585 + L3b LINE CR1 1319 1459 -124 459 332 166 41 chr11 126170039 126170924 -24612629 - L2 LINE L2 0 3272 2246 180 111 0 0 chr11 126172274 126172301 -24611252 + (TG)n Simple_repeat Simple_repeat 1 27 0 246 325 49 24 chr11 126172583 126172706 -24610847 + L3b LINE CR1 1327 1452 -131 376 233 0 0 chr11 126173817 126173890 -24609663 + L2 LINE L2 3139 3211 -61 1637 335 71 40 chr11 126176816 126178273 -24605280 - L2 LINE L2 0 3272 1775 2016 177 74 0 chr11 126178625 126178992 -24604561 - MSTD LTR MaLR 0 396 3 610 300 50 30 chr11 126179113 126179313 -24604240 - MIR SINE MIR -39 223 20 206 299 134 8 chr11 126179311 126179438 -24604115 + L2 LINE L2 3171 3313 0 * 190 298 48 36 chr11 126180633 126180717 -24602836 - MIR3 SINE MIR -32 176 92 318 275 158 33 chr11 126180744 126180864 -24602689 - L2 LINE L2 -5 3308 3174 903 153 16 26 chr11 126181098 126181288 -24602265 - L1MB3 LINE L1 -1 6182 5995 2032 216 29 14 chr11 126181300 126181782 -24601771 - Charlie4a DNA MER1_type 0 508 20 256 186 62 31 chr11 126184105 126184202 -24599351 + (TCTCTG)n Simple_repeat Simple_repeat 1 100 0 183 258 0 0 chr11 126184499 126184530 -24599023 - L2 LINE L2 -25 3288 3258 684 281 28 17 chr11 126185099 126185277 -24598276 - MIR3 SINE MIR -5 203 24 286 204 20 0 chr11 126185851 126185949 -24597604 + (GGCTG)n Simple_repeat Simple_repeat 2 101 0 354 169 0 0 chr11 126186343 126186408 -24597145 + (CA)n Simple_repeat Simple_repeat 1 65 0 1095 84 11 17 chr11 126188880 126189059 -24594494 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 304 347 84 47 chr11 126189999 126190189 -24593364 - L2 LINE L2 0 3272 3076 446 280 69 32 chr11 126190309 126190498 -24593055 + MER91A DNA MER1_type 1 196 0 224 256 26 26 chr11 126190561 126190639 -24592914 - MIR SINE MIR -72 136 59 196 346 48 34 chr11 126191485 126191581 -24591972 + L2 LINE L2 2636 2729 -585 1624 210 52 6 chr11 126191581 126191929 -24591624 - MLT1A1 LTR MaLR -1 364 1 196 346 48 34 chr11 126191929 126192040 -24591513 + L2 LINE L2 2729 2846 -468 226 269 241 55 chr11 126192092 126192345 -24591208 + L2 LINE L2 2972 3271 -1 501 261 127 19 chr11 126193157 126193314 -24590239 + MIR SINE MIR 53 226 -36 319 333 107 33 chr11 126194081 126194324 -24589229 + L2 LINE L2 2700 2960 -354 400 276 19 0 chr11 126194363 126194468 -24589085 + L2 LINE L2 3206 3312 -1 550 239 106 58 chr11 126194557 126194607 -24588946 + MIR SINE MIR 39 85 -177 1613 132 149 10 chr11 126194607 126194903 -24588650 + MER1B DNA MER1_type 1 337 0 550 239 106 58 chr11 126194903 126195040 -24588513 + MIR SINE MIR 85 235 -27 440 324 7 20 chr11 126195832 126195980 -24587573 - MER5A DNA MER1_type -43 146 1 237 246 0 0 chr11 126197892 126197953 -24585600 + T-rich Low_complexity Low_complexity 1 61 0 336 311 108 7 chr11 126199580 126199728 -24583825 + MIR SINE MIR 29 191 -71 382 322 49 49 chr11 126199844 126200049 -24583504 - L2 LINE L2 -181 3091 2887 327 176 255 0 chr11 126200834 126200936 -24582617 - MER117 DNA MER1_type -50 147 20 2235 89 7 10 chr11 126201174 126201466 -24582087 - AluSq SINE Alu -18 295 5 787 233 104 16 chr11 126201572 126201765 -24581788 - MER63A DNA MER1_type 0 210 1 2320 108 3 0 chr11 126202448 126202753 -24580800 + AluSx SINE Alu 1 306 -6 5486 94 10 20 chr11 126202862 126203420 -24580133 + L1MA3 LINE L1 5497 6046 -259 2359 91 17 0 chr11 126203420 126203716 -24579837 + AluSx SINE Alu 1 301 -11 5486 94 10 20 chr11 126203716 126203974 -24579579 + L1MA3 LINE L1 6046 6305 0 183 205 0 0 chr11 126203993 126204032 -24579521 + A-rich Low_complexity Low_complexity 1 39 0 2319 145 48 9 chr11 126204072 126204608 -24578945 - LTR35 LTR ERV1 0 618 1 2517 67 0 16 chr11 126204638 126204950 -24578603 - AluY SINE Alu -4 307 1 205 191 24 0 chr11 126205252 126205294 -24578259 + CT-rich Low_complexity Low_complexity 3 45 0 1745 189 0 20 chr11 126206703 126207009 -24576544 - AluJo SINE Alu -12 300 1 4238 232 64 53 chr11 126208277 126210096 -24573457 - L1MEc LINE L1 -1922 4293 2367 447 271 32 45 chr11 126210096 126210251 -24573302 + MLT1E LTR MaLR 1 153 -440 4343 142 15 37 chr11 126210254 126211083 -24572470 + L1MC1 LINE L1 5423 6333 0 347 222 19 74 chr11 126211149 126211257 -24572296 + MLT1F1 LTR MaLR 441 567 0 729 236 83 88 chr11 126211301 126211768 -24571785 - L1MEc LINE L1 -4064 2332 1868 373 136 32 0 chr11 126211802 126211885 -24571668 - L1MB2 LINE L1 -2 6181 6079 1850 197 14 19 chr11 126211943 126212304 -24571249 + MLT1A1 LTR MaLR 6 364 -1 473 312 7 0 chr11 126212326 126212480 -24571073 - L1MEc LINE L1 -4576 1820 1666 21 57 0 0 chr11 126212613 126212648 -24570905 + AT_rich Low_complexity Low_complexity 1 35 0 314 323 71 15 chr11 126212720 126212918 -24570635 - HAL1b LINE L1 -659 689 481 1014 171 72 5 chr11 126212953 126213146 -24570407 - AluJo SINE Alu -23 289 84 895 193 47 0 chr11 126213915 126214086 -24569467 + AluJb SINE Alu 131 309 -3 420 185 43 22 chr11 126214262 126214354 -24569199 + MER5A DNA MER1_type 16 109 -80 8081 32 3 0 chr11 126214573 126216016 -24567537 - L1PA5 LINE L1 0 6154 4712 963 322 98 52 chr11 126216419 126217354 -24566199 + L2 LINE L2 2302 3272 0 444 252 10 19 chr11 126218580 126218683 -24564870 + MER81 DNA DNA 12 113 -1 4476 152 37 9 chr11 126218823 126219612 -24563941 - L1MB7 LINE L1 -1 6183 5373 1886 154 0 3 chr11 126220280 126220578 -24562975 + AluJo SINE Alu 9 305 -7 648 244 4 93 chr11 126222289 126222422 -24561131 + MIR SINE MIR 53 159 -103 1599 197 27 7 chr11 126222422 126222722 -24560831 + AluSx SINE Alu 1 306 -6 648 244 4 93 chr11 126222722 126222813 -24560740 + MIR SINE MIR 159 257 -5 1308 195 14 0 chr11 126223389 126223610 -24559943 - MER58A DNA MER1_type 0 224 1 1925 129 35 0 chr11 126223668 126223955 -24559598 - AluSx SINE Alu -12 300 4 1358 191 162 3 chr11 126223957 126224266 -24559287 + MER47A DNA MER2_type 9 366 0 778 89 0 49 chr11 126224431 126224554 -24558999 + AluY SINE Alu 193 309 -2 651 221 44 103 chr11 126224653 126224924 -24558629 - MER112 DNA MER1_type -1 255 1 200 365 16 0 chr11 126224986 126225049 -24558504 - L2 LINE L2 -83 3189 3126 3308 135 18 0 chr11 126226021 126226525 -24557028 + L1PA16 LINE L1 5654 6166 0 382 297 54 54 chr11 126226648 126226796 -24556757 - L2 LINE L2 -2 3270 3123 2198 122 0 7 chr11 126227888 126228192 -24555361 + AluSx SINE Alu 1 302 -10 724 122 114 32 chr11 126228417 126228540 -24555013 + FLAM_C SINE Alu 1 133 0 184 366 14 14 chr11 126228624 126228695 -24554858 - MIR3 SINE MIR -43 165 95 * 225 226 204 0 chr11 126228678 126228771 -24554782 + MIR3 SINE MIR 94 205 -3 379 353 172 20 chr11 126229736 126230039 -24553514 - L2 LINE L2 -8 3264 2916 444 215 13 74 chr11 126230064 126230213 -24553340 + LTR16A1 LTR ERVL 6 145 -312 599 250 119 21 chr11 126230397 126230633 -24552920 + LTR16A1 LTR ERVL 174 432 -25 731 178 0 31 chr11 126231035 126231164 -24552389 + FLAM_C SINE Alu 1 125 -8 285 284 68 23 chr11 126231983 126232071 -24551482 - L2 LINE L2 -28 3244 3153 1381 217 26 39 chr11 126232081 126232476 -24551077 + MLT1A1 LTR MaLR 1 360 -5 316 309 76 62 chr11 126232547 126232887 -24550666 - L2 LINE L2 -221 3051 2709 938 128 0 0 chr11 126232998 126233139 -24550414 - L1PA13 LINE L1 -3 6160 6020 5476 112 2 21 chr11 126233139 126233242 -24550311 - L1PA13 LINE L1 -39 6124 6021 2129 128 3 0 chr11 126233242 126233538 -24550015 + AluSq SINE Alu 1 297 -16 5476 112 2 21 chr11 126233538 126234244 -24549309 - L1PA13 LINE L1 -142 6021 5330 1360 62 5 52 chr11 126234259 126234451 -24549102 + L1PA8A LINE L1 5949 6131 0 249 208 0 0 chr11 126234642 126234690 -24548863 + L2 LINE L2 3224 3271 -1 3004 221 40 25 chr11 126235094 126235736 -24547817 + MER82 DNA MER2_type 2 653 0 507 301 66 36 chr11 126235898 126236094 -24547459 - MIR SINE MIR -59 203 2 895 167 0 0 chr11 126237905 126238031 -24545522 + FLAM_C SINE Alu 1 126 -7 2430 102 3 9 chr11 126238533 126238868 -24544685 + L1PB1 LINE L1 5818 6150 -1 2163 134 0 19 chr11 126238905 126239218 -24544335 + AluSx SINE Alu 1 307 -5 297 325 19 48 chr11 126239394 126239632 -24543921 + AluYa5 SINE Alu 99 330 0 384 273 45 34 chr11 126240103 126240279 -24543274 - L1MEd LINE L1 -4892 1227 1050 259 326 62 31 chr11 126240280 126240409 -24543144 - MLT1J2 LTR MaLR -55 395 263 315 336 117 7 chr11 126240441 126240578 -24542975 - MLT1J2 LTR MaLR -257 193 42 2134 100 3 85 chr11 126241236 126241576 -24541977 + AluSx SINE Alu 1 312 0 376 381 41 7 chr11 126241885 126242032 -24541521 + L2 LINE L2 3099 3250 -22 12025 192 35 24 chr11 126242930 126246686 -24536867 + L1MC1 LINE L1 32 3745 -2865 2199 89 41 10 chr11 126246686 126246977 -24536576 + AluSx SINE Alu 1 300 -12 12025 192 35 24 chr11 126246977 126247551 -24536002 + L1MC1 LINE L1 3745 4311 -2299 2427 90 0 0 chr11 126247551 126247852 -24535701 + AluSg SINE Alu 1 301 -9 12025 192 35 24 chr11 126247852 126249196 -24534357 + L1MC1 LINE L1 4311 5867 -743 2409 134 29 22 chr11 126249165 126249575 -24533978 + L1MC1 LINE L1 6201 6613 0 * 450 321 77 75 chr11 126249848 126250356 -24533197 - MLT1K LTR MaLR -24 564 56 225 0 0 0 chr11 126250414 126250439 -24533114 + (TTTCC)n Simple_repeat Simple_repeat 2 26 0 264 323 0 21 chr11 126250804 126250900 -24532653 + MIR SINE MIR 72 165 -97 1170 34 0 27 chr11 126251378 126251524 -24532029 + L1PA4 LINE L1 5737 5878 -277 1303 40 0 0 chr11 126251533 126251681 -24531872 + L1PA4 LINE L1 6005 6152 -3 3186 56 0 3 chr11 126251689 126252067 -24531486 + L1PA5 LINE L1 5770 6146 -8 542 153 43 27 chr11 126252555 126252697 -24530856 - LTR45B LTR ERV1 0 525 343 23 0 0 0 chr11 126253423 126253446 -24530107 + AT_rich Low_complexity Low_complexity 1 23 0 223 253 67 13 chr11 126253621 126253696 -24529857 - MIR3 SINE MIR -10 198 120 275 346 37 29 chr11 126253815 126253951 -24529602 + MER5A DNA MER1_type 45 181 -8 792 239 13 13 chr11 126253951 126254110 -24529443 + FRAM SINE Alu 1 159 -7 283 115 0 0 chr11 126254111 126254163 -24529390 + L1PA15 LINE L1 6113 6164 -1 408 207 72 72 chr11 126254782 126254924 -24528629 - MER112 DNA MER1_type -1 259 115 1811 171 0 10 chr11 126254924 126255217 -24528336 - AluJb SINE Alu -22 290 1 408 207 72 72 chr11 126255217 126255296 -24528257 - MER112 DNA MER1_type -144 116 38 1109 213 52 0 chr11 126255322 126255571 -24527982 + L1MB1 LINE L1 5913 6174 -15 273 301 189 26 chr11 126255782 126256211 -24527342 - L1ME LINE L1 -299 5822 5324 31 0 0 0 chr11 126256358 126256389 -24527164 + AT_rich Low_complexity Low_complexity 1 31 0 452 217 76 51 chr11 126256392 126256549 -24527004 - LTR12 LTR ERV1 -354 360 200 3404 222 16 28 chr11 126256813 126257549 -24526004 - HERV17 LTR ERV1 -4 8622 504 10851 178 4 3 chr11 126257554 126259332 -24524221 - HERV17 LTR ERV1 -4367 4259 2481 764 125 50 155 chr11 126259585 126259729 -24523824 + MER5A DNA MER1_type 1 120 -69 868 138 8 0 chr11 126259729 126259859 -24523694 - FLAM_C SINE Alu -2 131 1 764 125 50 155 chr11 126259859 126259914 -24523639 + MER5A DNA MER1_type 120 179 -10 2418 51 38 3 chr11 126260374 126260666 -24522887 - AluSp SINE Alu -11 302 1 2479 97 0 0 chr11 126261580 126261889 -24521664 + AluSc SINE Alu 1 309 0 231 114 0 0 chr11 126262880 126262915 -24520638 + (TC)n Simple_repeat Simple_repeat 2 36 0 417 293 17 9 chr11 126263083 126263199 -24520354 - L2 LINE L2 0 3313 3197 198 0 0 0 chr11 126263510 126263532 -24520021 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 969 254 141 6 chr11 126263840 126264195 -24519358 + MLT1L LTR MaLR 1 403 -212 22 56 0 0 chr11 126264233 126264269 -24519284 + AT_rich Low_complexity Low_complexity 1 36 0 202 148 66 0 chr11 126264276 126264337 -24519216 + (TA)n Simple_repeat Simple_repeat 1 65 0 228 254 0 0 chr11 126264559 126264614 -24518939 + Charlie7 DNA MER1_type 302 356 -2256 512 219 158 8 chr11 126264637 126264884 -24518669 + Charlie7 DNA MER1_type 1808 2091 -521 1378 184 33 27 chr11 126264903 126265105 -24518448 - L1MC2 LINE L1 -329 6015 5809 1827 98 8 0 chr11 126265105 126265349 -24518204 - AluY SINE Alu -12 299 54 1378 184 33 27 chr11 126265349 126265483 -24518070 - L1MC2 LINE L1 -535 5809 5677 354 224 127 82 chr11 126265517 126265942 -24517611 + Charlie7 DNA MER1_type 2154 2597 -15 1506 181 7 11 chr11 126265966 126266237 -24517316 + AluJo SINE Alu 30 299 -13 2913 127 143 16 chr11 126266326 126266948 -24516605 - L1MC2 LINE L1 -1 6343 5643 349 210 12 0 chr11 126266943 126267024 -24516529 - L1MC2 LINE L1 -917 5229 5148 * 231 75 19 94 chr11 126267027 126267080 -24516473 + LTR14B LTR ERVK 1 49 -559 * 1892 113 97 24 chr11 126267062 126267433 -24516120 + LTR14B LTR ERVK 211 608 0 1726 232 18 18 chr11 126267435 126267916 -24515637 - L1MC2 LINE L1 -996 5150 4667 180 0 0 0 chr11 126267916 126267936 -24515617 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1726 232 18 18 chr11 126267936 126267962 -24515591 - L1MC2 LINE L1 -1478 4668 4643 1999 129 10 26 chr11 126267969 126268279 -24515274 - AluSx SINE Alu -7 305 1 235 233 138 67 chr11 126268309 126268483 -24515070 - MIR3 SINE MIR -41 167 16 335 275 57 51 chr11 126268944 126269315 -24514238 - L1ME4a LINE L1 -1 6120 5748 180 97 0 0 chr11 126269681 126269712 -24513841 + (A)n Simple_repeat Simple_repeat 1 31 0 2607 217 60 9 chr11 126270216 126270971 -24512582 + L1M4 LINE L1 3679 4471 -1675 1733 159 0 18 chr11 126270972 126271255 -24512298 + AluJb SINE Alu 1 278 -34 660 282 59 39 chr11 126271392 126271853 -24511700 - L1MC2 LINE L1 -1891 4255 3786 394 238 9 38 chr11 126271869 126271974 -24511579 + MIR SINE MIR 29 130 -132 356 119 2 119 chr11 126271984 126272161 -24511392 - AluSp SINE Alu -44 259 131 361 257 0 10 chr11 126272170 126272271 -24511282 + L1M4 LINE L1 4845 4944 -1202 283 264 24 32 chr11 126272314 126272439 -24511114 + L1M4 LINE L1 4930 5053 -1093 1168 190 95 0 chr11 126272445 126272708 -24510845 + MER49 LTR ERV1 1 288 -635 306 67 0 0 chr11 126272723 126272768 -24510785 + (TG)n Simple_repeat Simple_repeat 2 46 0 326 68 0 0 chr11 126272798 126272842 -24510711 + MER4D LTR ERV1 238 281 -622 1400 200 19 22 chr11 126272860 126273180 -24510373 + MER4D LTR ERV1 568 886 -17 1477 214 67 19 chr11 126273202 126273562 -24509991 + MER21B LTR ERV1 1 377 -486 219 333 62 10 chr11 126275049 126275145 -24508408 - MIR SINE MIR -78 130 30 254 206 0 41 chr11 126275181 126275254 -24508299 - MLT1K LTR MaLR -10 578 509 235 250 45 11 chr11 126276313 126276401 -24507152 + MER70B LTR ERVL 459 549 -29 2069 102 3 74 chr11 126278572 126278897 -24504656 + AluSq SINE Alu 1 302 -11 798 206 112 65 chr11 126279788 126279929 -24503624 - MER58A DNA MER1_type -2196 224 68 1792 167 0 7 chr11 126279929 126280217 -24503336 - AluJb SINE Alu -26 286 1 798 206 112 65 chr11 126280217 126280289 -24503264 - MER58A DNA MER1_type -2352 68 1 319 143 60 98 chr11 126280380 126280513 -24503040 - Charlie7 DNA MER1_type -49 2563 2436 * 720 258 13 9 chr11 126280507 126280736 -24502817 - Charlie7 DNA MER1_type -1879 733 504 709 239 174 5 chr11 126280749 126280962 -24502591 - MIR SINE MIR -1 261 13 1247 226 100 14 chr11 126280986 126281416 -24502137 - Charlie7 DNA MER1_type -2118 494 28 888 161 56 22 chr11 126281771 126281951 -24501602 - MER5A DNA MER1_type -3 186 1 558 295 44 85 chr11 126282257 126282449 -24501104 + L2 LINE L2 2151 2320 -994 1969 184 45 37 chr11 126282449 126282685 -24500868 + MLT1C LTR MaLR 1 233 -234 2231 102 3 3 chr11 126282685 126282978 -24500575 + AluSg SINE Alu 2 294 -16 1969 184 45 37 chr11 126282978 126283204 -24500349 + MLT1C LTR MaLR 233 467 0 558 295 44 85 chr11 126283204 126283401 -24500152 + L2 LINE L2 2320 2524 -790 522 257 151 5 chr11 126283535 126283726 -24499827 - MIR SINE MIR 0 262 37 246 397 91 38 chr11 126283802 126284220 -24499333 + L2 LINE L2 2823 3262 -10 189 358 46 46 chr11 126285986 126286095 -24497458 - L2 LINE L2 -47 3225 3117 1555 222 56 10 chr11 126286804 126287200 -24496353 + MER110 LTR ERV1 66 479 -12 266 264 75 69 chr11 126288791 126288950 -24494603 + MIR SINE MIR 8 147 -61 465 299 84 0 chr11 126291219 126291386 -24492167 + MIR SINE MIR 37 217 -45 2279 131 0 0 chr11 126291437 126291743 -24491810 + AluSx SINE Alu 1 306 -6 6113 110 0 0 chr11 126292580 126293606 -24489947 - L1PA14 LINE L1 -9 6152 5128 352 297 23 46 chr11 126293969 126294055 -24489498 - MIR SINE MIR -17 245 163 2330 98 0 3 chr11 126294055 126294351 -24489202 - AluSg SINE Alu -15 295 1 352 297 23 46 chr11 126294351 126294439 -24489114 - MIR SINE MIR -99 163 75 1033 284 137 35 chr11 126294448 126294756 -24488797 - L2 LINE L2 -559 2755 2480 2815 178 13 31 chr11 126294756 126295307 -24488246 + MLT1F LTR MaLR 2 542 0 1033 284 137 35 chr11 126295307 126295515 -24488038 - L2 LINE L2 -834 2480 2186 257 289 13 0 chr11 126295535 126295611 -24487942 - L2 LINE L2 -220 3052 2976 22 35 0 0 chr11 126297035 126297064 -24486489 + AT_rich Low_complexity Low_complexity 1 29 0 965 149 54 34 chr11 126297509 126297828 -24485725 + MSTD LTR MaLR 1 396 0 270 0 0 0 chr11 126297923 126297953 -24485600 + (CAA)n Simple_repeat Simple_repeat 2 31 0 25 75 0 0 chr11 126298104 126298157 -24485396 + AT_rich Low_complexity Low_complexity 1 53 0 989 171 0 0 chr11 126298161 126298307 -24485246 + FRAM SINE Alu 1 146 -30 1245 247 29 8 chr11 126298322 126298698 -24484855 - L1ME2 LINE L1 -17 6147 5764 1864 156 20 0 chr11 126298792 126299087 -24484466 - AluJo SINE Alu -11 301 1 2334 87 3 13 chr11 126299496 126299805 -24483748 - AluSq SINE Alu -7 306 1 663 169 7 78 chr11 126299874 126300028 -24483525 - FLAM_C SINE Alu 0 143 1 2219 132 0 3 chr11 126300032 126300336 -24483217 - AluSx SINE Alu -9 303 1 2261 103 3 13 chr11 126300557 126300868 -24482685 + AluSx SINE Alu 1 308 -4 869 129 8 0 chr11 126300993 126301117 -24482436 + FLAM_C SINE Alu 1 125 -18 21 36 0 0 chr11 126301117 126301145 -24482408 + AT_rich Low_complexity Low_complexity 1 28 0 2188 95 20 10 chr11 126301214 126301520 -24482033 + AluSq SINE Alu 5 313 0 780 186 0 0 chr11 126301528 126301657 -24481896 + FLAM_C SINE Alu 3 131 -12 343 231 212 72 chr11 126301658 126301922 -24481631 - L1ME4a LINE L1 -17 6104 5804 22 0 0 0 chr11 126302228 126302250 -24481303 + AT_rich Low_complexity Low_complexity 1 22 0 1705 163 0 81 chr11 126302438 126302573 -24480980 + AluJb SINE Alu 1 145 -167 2051 141 26 0 chr11 126302573 126302877 -24480676 + AluSx SINE Alu 1 312 0 1705 163 0 81 chr11 126302877 126303073 -24480480 + AluJb SINE Alu 145 305 -7 440 216 10 0 chr11 126303245 126303342 -24480211 + MER58 DNA MER1_type 7 104 -2316 4197 166 45 10 chr11 126303353 126304230 -24479323 + Cheshire DNA MER1_type 1514 2420 0 181 231 0 19 chr11 126304230 126304282 -24479271 + MIR SINE MIR 164 214 -48 1517 53 5 11 chr11 126304301 126304491 -24479062 - AluY SINE Alu -17 294 106 1057 15 15 0 chr11 126304491 126304622 -24478931 + (TTTTC)n Simple_repeat Simple_repeat 2 134 0 2315 82 0 0 chr11 126304622 126304904 -24478649 - AluSx SINE Alu -29 283 2 837 105 0 0 chr11 126304904 126305018 -24478535 - AluY SINE Alu -197 114 1 317 209 47 115 chr11 126305028 126305176 -24478377 - L1ME4a LINE L1 -346 5775 5638 221 278 296 9 chr11 126305359 126305467 -24478086 - L2 LINE L2 0 3272 3134 704 185 27 7 chr11 126306219 126306365 -24477188 - FRAM SINE Alu -14 152 4 318 252 122 0 chr11 126306547 126306678 -24476875 + MER103 DNA DNA 7 153 -13 432 306 87 0 chr11 126308298 126308471 -24475082 - L3 LINE CR1 -37 1540 1353 672 198 115 11 chr11 126308515 126308697 -24474856 + MER105 DNA DNA 4 204 0 384 268 145 14 chr11 126308699 126308837 -24474716 + MIR SINE MIR 63 218 -44 284 300 30 40 chr11 126308821 126308921 -24474632 + L2 LINE L2 3200 3298 -15 * 180 224 82 0 chr11 126308938 126308987 -24474566 + MIR SINE MIR 210 262 0 386 290 69 8 chr11 126308988 126309119 -24474434 - L3 LINE CR1 -381 1196 1058 1700 189 3 3 chr11 126312704 126313017 -24470536 - AluSq SINE Alu 0 313 1 31 26 0 0 chr11 126313084 126313122 -24470431 + AT_rich Low_complexity Low_complexity 1 38 0 275 364 52 19 chr11 126313490 126313644 -24469909 - L3 LINE CR1 -48 1529 1371 414 270 150 30 chr11 126314017 126314217 -24469336 + MIR SINE MIR 21 244 -18 376 233 0 0 chr11 126316927 126317000 -24466553 - L2 LINE L2 -61 3211 3139 246 325 49 24 chr11 126318111 126318234 -24465319 - L3b LINE CR1 -131 1452 1327 180 111 0 0 chr11 126318516 126318543 -24465010 + (CA)n Simple_repeat Simple_repeat 1 27 0 454 333 166 41 chr11 126319884 126320769 -24462784 + L2 LINE L2 2246 3272 0 217 290 153 16 chr11 126321839 126321963 -24461590 - L3b LINE CR1 -124 1459 1319 180 0 0 0 chr11 126322702 126322722 -24460831 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1575 123 0 13 chr11 126322727 126322955 -24460598 + AluSg/x SINE Alu 86 310 -2 269 248 205 17 chr11 126322992 126323109 -24460444 + MIR SINE MIR 89 227 -35 226 405 0 0 chr11 126323275 126323359 -24460194 - L2 LINE L2 -3 3269 3186 633 252 66 53 chr11 126323616 126323842 -24459711 + MIR SINE MIR 8 236 -26 471 313 34 28 chr11 126324896 126325072 -24458481 + MIR3 SINE MIR 10 186 -22 192 40 0 0 chr11 126325209 126325234 -24458319 + (TTTC)n Simple_repeat Simple_repeat 1 25 0 605 313 5 49 chr11 126326002 126326226 -24457327 - MIR SINE MIR 0 262 49 2132 95 3 14 chr11 126326337 126326631 -24456922 + AluSx SINE Alu 13 303 -9 297 0 0 0 chr11 126327355 126327388 -24456165 + (CA)n Simple_repeat Simple_repeat 1 33 0 353 355 14 7 chr11 126327467 126327605 -24455948 - MIR SINE MIR -71 191 53 385 323 16 47 chr11 126329056 126329248 -24454305 - MIR SINE MIR -62 200 15 1015 118 0 0 chr11 126329501 126329636 -24453917 + AluSq/x SINE Alu 1 135 -178 2078 108 11 0 chr11 126329636 126329915 -24453638 + AluSx SINE Alu 1 282 -30 341 22 22 0 chr11 126329919 126329965 -24453588 + (TG)n Simple_repeat Simple_repeat 2 48 0 420 299 17 75 chr11 126330170 126330344 -24453209 - MER5B DNA MER1_type -11 167 4 225 200 0 20 chr11 126330526 126330576 -24452977 + (TG)n Simple_repeat Simple_repeat 2 50 0 221 132 0 19 chr11 126331226 126331279 -24452274 + (TA)n Simple_repeat Simple_repeat 1 52 0 183 139 0 0 chr11 126332172 126332208 -24451345 + (TA)n Simple_repeat Simple_repeat 1 36 0 198 171 26 40 chr11 126332488 126332564 -24450989 + CT-rich Low_complexity Low_complexity 4 78 0 225 94 0 0 chr11 126332793 126332825 -24450728 + (A)n Simple_repeat Simple_repeat 1 32 0 296 44 44 0 chr11 126334339 126334384 -24449169 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 241 222 0 63 chr11 126334795 126334858 -24448695 + L2 LINE L2 3214 3272 0 463 208 94 47 chr11 126334887 126335036 -24448517 - MER69A DNA AcHobo -3 174 19 219 328 62 39 chr11 126335571 126335699 -24447854 + L2 LINE L2 3134 3264 -8 2417 96 0 10 chr11 126335739 126336052 -24447501 - AluSx SINE Alu -2 310 1 342 0 0 0 chr11 126336688 126336726 -24446827 + (TG)n Simple_repeat Simple_repeat 2 39 0 341 288 163 47 chr11 126338558 126338773 -24444780 - MIR SINE MIR -5 257 18 730 232 85 6 chr11 126338802 126338979 -24444574 + MIR SINE MIR 63 253 -9 267 360 72 0 chr11 126340463 126340574 -24442979 - L2 LINE L2 -29 3243 3125 860 185 0 56 chr11 126341611 126341789 -24441764 - AluJb SINE Alu -11 301 134 1959 131 7 20 chr11 126341789 126342095 -24441458 - AluSc SINE Alu -7 302 1 2316 112 3 0 chr11 126343096 126343401 -24440152 - AluSx SINE Alu -6 306 1 2570 206 30 7 chr11 126343404 126344007 -24439546 - L1M4 LINE L1 -846 5300 4684 592 196 80 20 chr11 126344025 126344224 -24439329 - L1M4 LINE L1 -1738 4408 4198 975 207 0 0 chr11 126344224 126344388 -24439165 - FRAM SINE Alu -15 161 1 303 362 6 6 chr11 126344500 126344663 -24438890 + (TATG)n Simple_repeat Simple_repeat 3 165 0 1695 139 16 0 chr11 126344848 126345099 -24438454 - AluSx SINE Alu -57 255 1 505 267 26 31 chr11 126345346 126345541 -24438012 - L1M4 LINE L1 -1898 4248 4055 2196 141 0 0 chr11 126395562 126395868 -24387685 - AluSx SINE Alu -6 306 1 407 299 84 0 chr11 126395919 126396086 -24387467 - MIR SINE MIR -45 217 37 239 254 55 55 chr11 126398355 126398465 -24385088 - MIR SINE MIR -61 147 53 1724 221 60 12 chr11 126400100 126400503 -24383050 - MER110 LTR ERV1 -6 485 64 454 264 180 0 chr11 126403592 126403770 -24379783 + MIR SINE MIR 53 262 0 445 295 46 87 chr11 126403904 126404101 -24379452 - L2 LINE L2 -790 2524 2349 2038 192 41 32 chr11 126404101 126404327 -24379226 - MLT1C LTR MaLR 0 467 244 2247 102 3 3 chr11 126404327 126404620 -24378933 - AluSg SINE Alu -16 294 2 2038 192 41 32 chr11 126404620 126404856 -24378697 - MLT1C LTR MaLR -223 244 1 445 295 46 87 chr11 126404856 126405048 -24378505 - L2 LINE L2 -965 2349 2151 905 161 56 22 chr11 126405354 126405534 -24378019 + MER5A DNA MER1_type 1 186 -3 1417 223 100 14 chr11 126405889 126406319 -24377234 + Charlie7 DNA MER1_type 28 494 -2118 633 239 174 5 chr11 126406343 126406556 -24376997 + MIR SINE MIR 13 261 -1 792 258 13 9 chr11 126406569 126406798 -24376755 + Charlie7 DNA MER1_type 504 733 -1879 360 143 60 98 chr11 126406792 126406925 -24376628 + Charlie7 DNA MER1_type 2436 2563 -49 * 816 206 112 65 chr11 126407016 126407088 -24376465 + MER58A DNA MER1_type 1 68 -2352 1802 167 0 7 chr11 126407088 126407376 -24376177 + AluJb SINE Alu 1 286 -26 816 206 112 65 chr11 126407376 126407517 -24376036 + MER58A DNA MER1_type 68 224 0 1994 111 3 74 chr11 126408407 126408731 -24374822 - AluSq SINE Alu -11 302 2 230 263 133 75 chr11 126410898 126411191 -24372362 - MER70B LTR ERVL -29 549 240 231 195 12 49 chr11 126412013 126412095 -24371458 + LTR67 LTR ERVL 457 535 -22 * 275 206 0 41 chr11 126412040 126412113 -24371440 + MLT1K LTR MaLR 509 578 -10 219 333 62 10 chr11 126412149 126412245 -24371308 + MIR SINE MIR 30 130 -78 440 216 10 0 chr11 126412877 126412974 -24370579 + MER58 DNA MER1_type 7 104 -2316 4215 164 46 10 chr11 126412985 126413861 -24369692 + Cheshire DNA MER1_type 1514 2420 0 181 231 0 19 chr11 126413861 126413913 -24369640 + MIR SINE MIR 164 214 -48 1517 53 5 11 chr11 126413932 126414122 -24369431 - AluY SINE Alu -17 294 106 1106 22 7 0 chr11 126414122 126414259 -24369294 + (TTTTC)n Simple_repeat Simple_repeat 2 139 0 2312 82 0 0 chr11 126414259 126414541 -24369012 - AluSx SINE Alu -29 283 2 837 105 0 0 chr11 126414541 126414655 -24368898 - AluY SINE Alu -197 114 1 317 209 47 115 chr11 126414665 126414813 -24368740 - L1ME LINE L1 -346 5775 5638 221 278 296 9 chr11 126414997 126415105 -24368448 - L2 LINE L2 0 3272 3134 704 185 27 7 chr11 126415857 126416003 -24367550 - FRAM SINE Alu -14 152 4 318 252 122 0 chr11 126416185 126416316 -24367237 + MER103 DNA DNA 7 153 -13 432 306 87 0 chr11 126417936 126418109 -24365444 - L3 LINE CR1 -37 1540 1353 672 198 115 11 chr11 126418153 126418335 -24365218 + MER105 DNA DNA 4 204 0 384 268 145 14 chr11 126418337 126418475 -24365078 + MIR SINE MIR 63 218 -44 284 300 30 40 chr11 126418459 126418559 -24364994 + L2 LINE L2 3200 3298 -15 * 180 224 82 0 chr11 126418576 126418625 -24364928 + MIR SINE MIR 210 262 0 386 290 69 8 chr11 126418626 126418757 -24364796 - L3 LINE CR1 -381 1196 1058 321 26 0 0 chr11 126422328 126422366 -24361187 + (T)n Simple_repeat Simple_repeat 1 38 0 230 207 17 0 chr11 126422841 126422899 -24360654 + MER112 DNA MER1_type 74 132 -128 361 349 82 0 chr11 126422994 126423140 -24360413 + MIR3 SINE MIR 30 187 -21 571 301 124 9 chr11 126423256 126423482 -24360071 - MIR SINE MIR -10 252 1 597 285 76 62 chr11 126423627 126423981 -24359572 - L2 LINE L2 -412 2902 2544 539 248 0 8 chr11 126424205 126424322 -24359231 + FLAM_A SINE Alu 2 117 -16 22 35 0 0 chr11 126424525 126424554 -24358999 + AT_rich Low_complexity Low_complexity 1 29 0 196 306 172 25 chr11 126424638 126424795 -24358758 + L2 LINE L2 2352 2531 -783 366 292 204 40 chr11 126424795 126424815 -24358738 + L2 LINE L2 2928 2943 -370 783 209 107 19 chr11 126424815 126425021 -24358532 - MER58A DNA MER1_type 0 224 1 366 292 204 40 chr11 126425021 126425329 -24358224 + L2 LINE L2 2943 3310 -3 1951 51 0 4 chr11 126426397 126426632 -24356921 + AluSg1 SINE Alu 1 234 -75 2209 126 0 0 chr11 126429014 126429316 -24354237 - AluSx SINE Alu -10 302 1 902 141 180 39 chr11 126429564 126429770 -24353783 - MER46A DNA MER2_type 0 236 2 329 340 148 0 chr11 126430050 126430253 -24353300 + L2 LINE L2 2522 2754 -560 392 303 114 72 chr11 126430293 126430583 -24352970 + L2 LINE L2 2935 3236 -36 611 278 97 68 chr11 126430719 126430797 -24352756 - L1MEc LINE L1 -2373 3842 3768 2011 144 0 7 chr11 126430797 126431102 -24352451 - AluSx SINE Alu -4 308 6 611 278 97 68 chr11 126431102 126431527 -24352026 - L1MEc LINE L1 -2447 3768 3324 2881 249 77 82 chr11 126431540 126432281 -24351272 - L1MEc LINE L1 -4455 1941 1198 1735 136 14 35 chr11 126432281 126432568 -24350985 - AluJo SINE Alu -31 281 1 1381 201 65 0 chr11 126432570 126432849 -24350704 - AluJo SINE Alu -15 297 1 2881 249 77 82 chr11 126432849 126434018 -24349535 - L1MEc LINE L1 -5199 1197 37 353 330 63 5 chr11 126434021 126434212 -24349341 - L1 LINE L1 -3172 2974 2773 31 44 0 0 chr11 126434961 126435006 -24348547 + AT_rich Low_complexity Low_complexity 1 45 0 410 344 59 15 chr11 126435281 126435554 -24347999 - L1 LINE L1 -3630 2516 2232 1004 266 87 58 chr11 126435878 126436443 -24347110 - MLT2F LTR ERVL 0 663 83 1182 253 75 88 chr11 126436450 126437145 -24346408 - MER21B LTR ERV1 -154 709 24 380 180 0 22 chr11 126437182 126437271 -24346282 - MLT2F LTR ERVL -576 87 1 2267 93 63 44 chr11 126437331 126437697 -24345856 - THE1C LTR MaLR -2 373 1 1174 147 5 14 chr11 126437829 126438047 -24345506 + L1MA7 LINE L1 5932 6147 -144 231 254 48 56 chr11 126438384 126438510 -24345043 - L1MC4a LINE L1 -1629 6179 6055 1907 226 160 8 chr11 126438870 126439383 -24344170 - MLT1G1 LTR MaLR 0 595 5 2455 80 3 0 chr11 126439384 126439686 -24343867 + AluSp SINE Alu 1 303 -10 868 209 46 122 chr11 126439949 126440342 -24343211 + MLT1A2 LTR MaLR 12 374 0 2335 115 0 6 chr11 126440533 126440847 -24342706 - AluSx SINE Alu 0 312 1 326 320 73 26 chr11 126440932 126441125 -24342428 - L1M LINE L1 -704 5417 5218 1255 113 39 58 chr11 126441257 126441514 -24342039 - L1MA3 LINE L1 0 6305 6054 20906 151 24 15 chr11 126441564 126442838 -24340715 - L1 LINE L1 -2637 4928 3668 2702 20 0 0 chr11 126442838 126443138 -24340415 - AluY SINE Alu -11 300 1 20906 151 24 15 chr11 126443138 126446723 -24336830 - L1 LINE L1 -3897 3668 13 619 179 82 0 chr11 126447176 126447310 -24336243 - L1MB4 LINE L1 0 6180 6036 1376 156 15 19 chr11 126447327 126447404 -24336149 - L1MB4 LINE L1 -200 5980 5904 2103 144 24 0 chr11 126447404 126447744 -24335809 + MER7A DNA MER2_type 1 346 0 1376 156 15 19 chr11 126447744 126447936 -24335617 - L1MB4 LINE L1 -276 5904 5712 39 38 0 0 chr11 126448319 126448372 -24335181 + AT_rich Low_complexity Low_complexity 1 53 0 244 306 63 36 chr11 126448467 126448578 -24334975 - MIR SINE MIR -124 138 25 229 197 61 0 chr11 126448875 126448941 -24334612 - L1MA4 LINE L1 -5 6295 6226 810 135 0 0 chr11 126450316 126450427 -24333126 - FLAM_C SINE Alu -12 131 21 281 172 0 2 chr11 126450494 126450547 -24333006 - MLT1J LTR MaLR -315 168 84 236 290 107 38 chr11 126450740 126450871 -24332682 - MIR SINE MIR -18 244 105 201 385 0 12 chr11 126451040 126451123 -24332430 - MIR SINE MIR -161 101 20 275 310 167 0 chr11 126452312 126452528 -24331025 + L2 LINE L2 2196 2447 -867 248 263 0 18 chr11 126452942 126452999 -24330554 + L2 LINE L2 3213 3268 -4 774 238 24 0 chr11 126453594 126453758 -24329795 - AluJo SINE Alu -7 305 138 2858 118 31 0 chr11 126453758 126454173 -24329380 - MSTA LTR MaLR 0 428 1 295 197 16 0 chr11 126454179 126454240 -24329313 - MSTA-int LTR MaLR -835 816 755 * 3046 137 19 0 chr11 126454238 126454763 -24328790 - MSTA-int LTR MaLR -1115 536 2 2647 127 31 2 chr11 126454764 126455180 -24328373 - MSTA LTR MaLR 0 428 1 841 164 0 0 chr11 126455215 126455343 -24328210 - AluJo SINE Alu -173 129 2 1934 163 3 10 chr11 126455513 126455826 -24327727 + AluJb SINE Alu 1 311 -1 2624 123 8 39 chr11 126455848 126456267 -24327286 + L1MB3 LINE L1 5711 6114 -69 1956 144 6 59 chr11 126456267 126456622 -24326931 - MER1B DNA MER1_type 0 337 2 2624 123 8 39 chr11 126456622 126456690 -24326863 + L1MB3 LINE L1 6114 6183 0 2249 99 3 0 chr11 126456894 126457186 -24326367 - AluSg SINE Alu -17 293 1 3313 134 89 2 chr11 126457985 126458567 -24324986 + MER41B LTR ERV1 1 633 -2 344 295 129 78 chr11 126459077 126459686 -24323867 - L1M2 LINE L1 -5411 1438 878 488 350 39 0 chr11 126459701 126459881 -24323672 - MIR3 SINE MIR -7 201 15 327 211 33 67 chr11 126460060 126460150 -24323403 + L2 LINE L2 3184 3270 -2 285 328 126 8 chr11 126460460 126460579 -24322974 - MIR3 SINE MIR -45 163 31 26 30 0 0 chr11 126460584 126460617 -24322936 + AT_rich Low_complexity Low_complexity 1 33 0 756 257 53 18 chr11 126460651 126460877 -24322676 - MIR SINE MIR -12 250 17 343 241 55 55 chr11 126462266 126462411 -24321142 - MIR SINE MIR 0 262 118 27 0 0 0 chr11 126462541 126462568 -24320985 + AT_rich Low_complexity Low_complexity 1 27 0 1672 137 14 47 chr11 126462781 126463059 -24320494 - AluJo SINE Alu -19 293 25 521 235 150 0 chr11 126463098 126463285 -24320268 - MER58C DNA MER1_type 0 215 1 492 257 161 25 chr11 126464635 126464958 -24318595 - L1MC4 LINE L1 -134 7908 7542 231 309 29 0 chr11 126465947 126466015 -24317538 + L2 LINE L2 3244 3313 0 2448 31 41 0 chr11 126466599 126466891 -24316662 - AluY SINE Alu -7 304 1 206 241 56 0 chr11 126468102 126468156 -24315397 - L2 LINE L2 -3 3269 3213 870 230 81 34 chr11 126468238 126468560 -24314993 - MER46C DNA MER2_type 0 338 2 32 43 0 0 chr11 126469078 126469124 -24314429 + AT_rich Low_complexity Low_complexity 1 46 0 350 226 151 28 chr11 126469133 126469239 -24314314 - MER103 DNA DNA -47 119 1 195 42 0 0 chr11 126469903 126469927 -24313626 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 245 345 18 44 chr11 126470289 126470402 -24313151 - MIR SINE MIR -146 116 7 2251 140 17 98 chr11 126470927 126471399 -24312154 + Tigger2a DNA MER2_type 1 434 0 522 292 93 13 chr11 126471399 126471625 -24311928 + MIR SINE MIR 15 258 -4 22 56 0 0 chr11 126472145 126472181 -24311372 + AT_rich Low_complexity Low_complexity 1 36 0 1710 124 40 4 chr11 126472447 126472722 -24310831 - MER47A DNA MER2_type 0 366 82 746 161 0 0 chr11 126474076 126474194 -24309359 + FLAM_C SINE Alu 1 118 -25 2343 89 0 3 chr11 126474366 126474668 -24308885 + AluSc SINE Alu 1 301 -8 1992 146 20 18 chr11 126476009 126476351 -24307202 + MER2 DNA MER2_type 1 343 -1 470 183 67 39 chr11 126476525 126476629 -24306924 + AluSc SINE Alu 106 212 -97 * 628 215 0 8 chr11 126476622 126476743 -24306810 + AluJb SINE Alu 176 295 -17 466 170 21 0 chr11 126477023 126477117 -24306436 + L1MB3 LINE L1 6078 6173 -10 26 30 0 0 chr11 126478806 126478839 -24304714 + AT_rich Low_complexity Low_complexity 1 33 0 412 337 176 33 chr11 126479145 126479543 -24304010 - L2 LINE L2 -5 3308 2854 324 280 67 36 chr11 126480214 126480489 -24303064 - L1M4 LINE L1 -1072 5074 4794 913 291 62 43 chr11 126480576 126481206 -24302347 - L1M4 LINE L1 -1905 4241 3600 406 255 126 65 chr11 126481281 126481732 -24301821 - L1M4 LINE L1 -2664 3482 2993 495 248 101 53 chr11 126481751 126482069 -24301484 + L1MD1 LINE L1 2696 3028 -3118 407 260 123 26 chr11 126482075 126482302 -24301251 + L1MD1 LINE L1 3112 3360 -2786 877 266 92 21 chr11 126482329 126482756 -24300797 + L1MD1 LINE L1 5444 5906 -336 21 0 0 0 chr11 126482982 126483003 -24300550 + AT_rich Low_complexity Low_complexity 1 21 0 2295 103 3 0 chr11 126483053 126483354 -24300199 + AluSx SINE Alu 1 302 -10 795 233 66 40 chr11 126483391 126483768 -24299785 + L1ME3 LINE L1 3862 4248 -1898 240 235 39 0 chr11 126484071 126484122 -24299431 + Tigger5 DNA MER2_type 3 55 -2268 447 169 0 0 chr11 126484132 126484209 -24299344 + Tigger5 DNA MER2_type 2237 2313 -10 344 197 49 42 chr11 126484224 126484366 -24299187 + L1ME3 LINE L1 4312 4454 -1692 1184 263 95 62 chr11 126484369 126485278 -24298275 + L1ME3 LINE L1 5109 6046 -116 656 184 0 0 chr11 126485393 126485502 -24298051 + FLAM_A SINE Alu 25 133 -9 231 263 50 12 chr11 126485507 126485587 -24297966 + MIR SINE MIR 180 262 0 336 188 25 62 chr11 126486085 126486165 -24297388 - L1ME LINE L1 -564 5557 5481 1866 157 0 10 chr11 126487342 126487654 -24295899 + AluJb SINE Alu 4 312 0 1329 103 20 10 chr11 126487718 126487913 -24295640 + MER30 DNA MER1_type 1 197 -33 429 229 123 71 chr11 126488167 126488219 -24295334 - MIR SINE MIR -5 257 209 1016 165 58 10 chr11 126488219 126488425 -24295128 + MER20 DNA MER1_type 4 219 0 429 229 123 71 chr11 126488425 126488542 -24295011 - MIR SINE MIR -53 209 79 2362 76 10 7 chr11 126488796 126489099 -24294454 - AluY SINE Alu -7 304 1 3743 208 15 28 chr11 126489124 126489185 -24294368 - L1ME1 LINE L1 -5 6161 6101 1849 82 0 12 chr11 126489185 126489429 -24294124 - AluSg SINE Alu -21 289 49 3743 208 15 28 chr11 126489429 126490223 -24293330 - L1ME1 LINE L1 -65 6101 5317 2017 170 49 10 chr11 126490242 126490269 -24293284 - MLT2D LTR ERVL -10 404 380 378 0 0 0 chr11 126490269 126490311 -24293242 + (TG)n Simple_repeat Simple_repeat 2 43 0 2017 170 49 10 chr11 126490311 126490672 -24292881 - MLT2D LTR ERVL -34 380 1 1715 192 38 0 chr11 126490672 126491068 -24292485 - L1ME1 LINE L1 -835 5311 4901 371 291 0 0 chr11 126491790 126491876 -24291677 - MER91A DNA MER1_type 0 196 111 1622 91 41 0 chr11 126491977 126492198 -24291355 + MER30 DNA MER1_type 1 230 0 1354 138 112 9 chr11 126492219 126492451 -24291102 - MLT1A1 LTR MaLR 0 365 110 432 330 8 0 chr11 126493458 126493576 -24289977 + MIR SINE MIR 30 148 -114 1823 226 99 81 chr11 126493669 126494394 -24289159 - L2 LINE L2 -818 2496 1759 244 278 111 0 chr11 126494417 126494489 -24289064 - MIR SINE MIR 0 262 183 5234 162 58 29 chr11 126494505 126494913 -24288640 - Tigger6a DNA MER2_type -515 1082 688 2215 102 17 0 chr11 126494913 126495206 -24288347 - AluSg SINE Alu -12 298 1 5234 162 58 29 chr11 126495206 126495848 -24287705 - Tigger6a DNA MER2_type -909 688 1 2009 116 54 43 chr11 126496136 126496507 -24287046 - THE1C LTR MaLR 0 375 1 752 241 0 2 chr11 126496610 126496810 -24286743 + L1ME2 LINE L1 5591 5821 -345 1783 162 52 0 chr11 126496811 126497176 -24286377 + L1MA9 LINE L1 5919 6302 -10 554 189 43 10 chr11 126497274 126497427 -24286126 + L1ME2 LINE L1 5793 5946 -216 2196 151 67 43 chr11 126497748 126498212 -24285341 - MER67C LTR ERV1 -235 475 1 252 263 63 53 chr11 126498512 126498607 -24284946 - L2 LINE L2 -38 3234 3139 247 333 65 16 chr11 126498768 126498891 -24284662 - MER5A DNA MER1_type -50 139 11 1023 269 74 61 chr11 126498958 126499435 -24284118 - L2 LINE L2 -643 2671 2183 2184 173 54 5 chr11 126499435 126499840 -24283713 - MSTB LTR MaLR -1 425 1 1023 269 74 61 chr11 126499840 126499986 -24283567 - L2 LINE L2 -1131 2183 2040 738 311 93 27 chr11 126499990 126500366 -24283187 + MLT1K LTR MaLR 188 588 0 346 336 37 0 chr11 126501774 126501881 -24281672 - L2 LINE L2 -14 3258 3148 351 250 211 0 chr11 126502880 126502984 -24280569 + MIR SINE MIR 36 161 -101 618 284 129 9 chr11 126502987 126503219 -24280334 + MIR SINE MIR 3 262 0 204 121 30 0 chr11 126504066 126504099 -24279454 + CT-rich Low_complexity Low_complexity 2 35 0 245 191 103 15 chr11 126504507 126504575 -24278978 - L1ME4a LINE L1 -69 6052 5979 293 275 9 37 chr11 126504582 126504691 -24278862 + MIR SINE MIR 75 180 -82 11226 141 21 15 chr11 126504718 126504885 -24278668 - L1MA3 LINE L1 -5 6300 6135 1970 110 0 75 chr11 126504885 126505203 -24278350 - AluSx SINE Alu -18 294 1 11226 141 21 15 chr11 126505203 126508120 -24275433 - L1MA3 LINE L1 -170 6135 3197 19951 34 4 0 chr11 126508122 126510554 -24272999 + L1P LINE L1 2729 5169 -977 2789 13 0 0 chr11 126510554 126510857 -24272696 + AluYb8 SINE Alu 1 303 -15 8214 134 32 18 chr11 126510960 126512689 -24270864 + L1M1 LINE L1 2275 4285 -3280 2423 81 0 3 chr11 126512689 126512996 -24270557 + AluY SINE Alu 1 306 -5 8214 134 32 18 chr11 126512996 126513347 -24270206 + L1M1 LINE L1 4285 4629 -2936 7547 32 12 13 chr11 126513358 126514346 -24269207 - L1PA4 LINE L1 -3 6152 5164 2963 13 0 0 chr11 126514346 126514661 -24268892 - AluYb8 SINE Alu -3 315 1 7547 32 12 13 chr11 126514661 126515264 -24268289 - L1PA4 LINE L1 -991 5164 4562 457 232 86 83 chr11 126515709 126516140 -24267413 + HERVK22 LTR ERVK 4237 4668 -2169 222 304 107 86 chr11 126516954 126517720 -24265833 + L2 LINE L2 1174 1955 -1359 305 326 90 11 chr11 126517929 126518107 -24265446 - MIR SINE MIR 0 262 71 25 51 0 0 chr11 126518454 126518493 -24265060 + AT_rich Low_complexity Low_complexity 1 39 0 230 375 11 0 chr11 126518747 126518835 -24264718 - MIR SINE MIR -170 92 4 1680 167 46 21 chr11 126519376 126519657 -24263896 + AluJb SINE Alu 1 288 -24 223 197 34 34 chr11 126520296 126520413 -24263140 + (TATAA)n Simple_repeat Simple_repeat 4 120 0 38966 48 29 1 chr11 126521234 126526054 -24257499 - L1P LINE L1 -1192 4954 3 24 96 0 0 chr11 126534751 126534824 -24248729 + AT_rich Low_complexity Low_complexity 1 73 0 1227 260 56 3 chr11 126535605 126535807 -24247746 - L1M4 LINE L1 -1256 4890 4700 2126 111 24 0 chr11 126535807 126536095 -24247458 + AluSx SINE Alu 1 295 -17 1227 260 56 3 chr11 126536095 126536265 -24247288 - L1M4 LINE L1 -1446 4700 4498 1267 229 75 15 chr11 126536315 126536647 -24246906 - L1MB8 LINE L1 -5 6173 5822 634 164 25 0 chr11 126536647 126536769 -24246784 - AluSg/x SINE Alu 0 309 185 735 259 62 8 chr11 126537284 126537543 -24246010 + AluJb SINE Alu 22 294 -18 343 220 42 50 chr11 126537677 126537873 -24245680 + L1ME LINE L1 5624 5818 -346 1183 195 7 38 chr11 126537874 126538161 -24245392 + AluJb SINE Alu 1 278 -34 393 312 6 40 chr11 126538350 126538523 -24245030 - L2 LINE L2 -494 2820 2654 2388 68 6 10 chr11 126538895 126539206 -24244347 + AluY SINE Alu 1 310 -1 351 0 0 0 chr11 126539816 126539855 -24243698 + (CTG)n Simple_repeat Simple_repeat 1 39 0 284 231 26 13 chr11 126540276 126540354 -24243199 + GA-rich Low_complexity Low_complexity 4 82 0 197 337 11 22 chr11 126540827 126540919 -24242634 + MIR SINE MIR 20 110 -152 670 246 58 18 chr11 126541117 126541288 -24242265 + MER45A DNA AcHobo 1 178 0 1052 209 5 9 chr11 126541813 126542033 -24241520 + MIR SINE MIR 44 262 0 229 224 86 0 chr11 126542222 126542280 -24241273 + L2 LINE L2 3247 3309 -4 386 225 34 0 chr11 126543951 126544040 -24239513 - MIR SINE MIR -48 214 123 679 300 96 10 chr11 126544072 126544365 -24239188 - L3 LINE CR1 -86 1491 1174 979 169 67 0 chr11 126546096 126546291 -24237262 + MER63 DNA MER1_type 853 1060 0 1683 165 9 37 chr11 126546453 126546774 -24236779 - AluJo SINE Alu 0 312 1 1525 204 24 46 chr11 126548464 126548837 -24234716 - MLT1A1 LTR MaLR 0 365 1 415 229 76 15 chr11 126548906 126549037 -24234516 + MIR SINE MIR 124 262 0 361 263 36 98 chr11 126549263 126549487 -24234066 + L2 LINE L2 2869 3078 -194 198 281 16 47 chr11 126549612 126549676 -24233877 + L2 LINE L2 3234 3295 -18 1055 192 172 33 chr11 126549676 126549978 -24233575 - MER2 DNA MER2_type 0 344 1 252 0 0 0 chr11 126550003 126550031 -24233522 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1408 251 48 35 chr11 126550096 126550491 -24233062 - MLT1I LTR MaLR 0 409 10 200 269 0 0 chr11 126550545 126550597 -24232956 - L2 LINE L2 -225 3047 2996 286 281 173 7 chr11 126552188 126552327 -24231226 - MIR3 SINE MIR -1 207 46 205 320 0 41 chr11 126552457 126552554 -24230999 + L2 LINE L2 2246 2338 -976 15197 26 0 4 chr11 126552762 126555296 -24228257 + L1PA2 LINE L1 3621 6155 0 777 234 54 10 chr11 126555749 126555954 -24227599 + MIR SINE MIR 49 262 0 250 339 109 11 chr11 126556293 126556476 -24227077 + L3 LINE CR1 1345 1545 -32 914 234 38 28 chr11 126557739 126558029 -24225524 - AluJo SINE Alu -8 294 2 310 339 31 31 chr11 126558051 126558181 -24225372 + L2 LINE L2 3181 3310 -3 295 313 0 10 chr11 126558245 126558344 -24225209 + L2 LINE L2 3216 3313 0 253 294 0 20 chr11 126559666 126559768 -24223785 + GA-rich Low_complexity Low_complexity 1 100 0 244 296 70 91 chr11 126560496 126560682 -24222871 - MIR3 SINE MIR -4 204 23 773 259 36 0 chr11 126560765 126560985 -24222568 - MIR SINE MIR -28 234 7 296 329 23 81 chr11 126561279 126561623 -24221930 - L2 LINE L2 -16 3256 2933 1635 170 92 6 chr11 126561694 126562029 -24221524 + MER47A DNA MER2_type 3 366 0 579 341 10 0 chr11 126562210 126562415 -24221138 - MIR SINE MIR -50 212 6 440 232 38 30 chr11 126563272 126563395 -24220158 + L1ME LINE L1 5479 5598 -523 431 339 28 0 chr11 126563421 126563675 -24219878 + L1MC4a LINE L1 4802 5062 -1084 566 279 100 16 chr11 126564118 126564369 -24219184 - MER46C DNA MER2_type -51 287 16 614 280 89 32 chr11 126564369 126564741 -24218812 + L1MC4a LINE L1 5265 5657 -2151 302 292 52 0 chr11 126564783 126564879 -24218674 + L1MC4a LINE L1 5786 5886 -1922 209 128 0 26 chr11 126565079 126565118 -24218435 + (TA)n Simple_repeat Simple_repeat 2 39 0 359 148 148 16 chr11 126565124 126565246 -24218307 - L1MEd LINE L1 -4992 1127 990 344 149 66 8 chr11 126565277 126565398 -24218155 + (TATATG)n Simple_repeat Simple_repeat 3 130 0 * 667 106 34 28 chr11 126565371 126565550 -24218003 + (TA)n Simple_repeat Simple_repeat 1 180 0 295 291 17 0 chr11 126565706 126565823 -24217730 + L1ME LINE L1 5750 5868 -253 401 332 113 60 chr11 126565945 126566379 -24217174 - L2 LINE L2 -4 3268 2812 335 248 146 37 chr11 126566477 126566919 -24216634 - L1MEd LINE L1 -4918 1201 865 1110 42 0 0 chr11 126567333 126567475 -24216078 - L1P LINE L1 -2586 3560 3419 697 35 0 0 chr11 126567473 126567558 -24215995 + L1P LINE L1 2211 2295 -3851 * 2280 36 0 0 chr11 126567578 126567885 -24215668 - L1P LINE L1 -2718 3428 3122 * 28029 35 4 1 chr11 126567880 126571975 -24211578 + L1PA4 LINE L1 1838 5945 -210 403 178 11 0 chr11 126572087 126572177 -24211376 + L1P LINE L1 3048 3138 -3008 666 269 94 50 chr11 126572669 126573052 -24210501 - L2 LINE L2 -541 2773 2374 339 284 103 58 chr11 126573373 126573528 -24210025 + L2 LINE L2 3106 3267 -5 213 94 0 0 chr11 126575323 126575355 -24208198 + (CA)n Simple_repeat Simple_repeat 2 33 0 248 253 13 13 chr11 126575503 126575578 -24207975 + GA-rich Low_complexity Low_complexity 2 76 0 324 254 0 18 chr11 126576272 126576437 -24207116 + GA-rich Low_complexity Low_complexity 3 164 0 418 231 149 0 chr11 126577191 126577312 -24206241 - MIR SINE MIR 0 262 124 348 294 43 0 chr11 126578905 126578997 -24204556 + L2 LINE L2 3150 3245 -27 229 182 0 0 chr11 126579242 126579286 -24204267 + MLT1J2 LTR MaLR 277 320 -130 252 179 205 0 chr11 126579437 126579515 -24204038 - MIR SINE MIR -70 192 99 219 292 15 0 chr11 126580307 126580372 -24203181 - L2 LINE L2 -12 3301 3236 212 321 0 0 chr11 126580498 126580554 -24202999 - MER91 DNA MER1_type 0 196 141 329 272 29 29 chr11 126580731 126580834 -24202719 - MIR3 SINE MIR -21 187 85 311 287 140 14 chr11 126581673 126581816 -24201737 - MIR SINE MIR -83 179 19 285 251 69 0 chr11 126583706 126583798 -24199755 + MIR SINE MIR 93 190 -62 190 222 74 0 chr11 126584076 126584130 -24199423 + L2 LINE L2 3215 3272 0 339 333 34 0 chr11 126584414 126584531 -24199022 + MIR3 SINE MIR 84 204 -4 256 389 58 0 chr11 126585614 126585753 -24197800 - L2 LINE L2 0 3272 3126 1982 117 84 0 chr11 126585773 126586047 -24197506 + AluSg SINE Alu 1 297 -13 491 163 109 22 chr11 126586066 126586276 -24197277 - Charlie5 DNA MER1_type -27 2585 1 224 312 170 7 chr11 126586293 126586434 -24197119 - L2 LINE L2 -204 3068 2905 1254 276 91 36 chr11 126586626 126587299 -24196254 + L2 LINE L2 2600 3313 0 396 330 113 43 chr11 126587312 126587900 -24195653 - L2 LINE L2 -157 3115 2475 202 300 92 31 chr11 126587984 126588114 -24195439 - L2 LINE L2 -990 2324 2187 213 269 161 34 chr11 126588681 126588830 -24194723 + MIR3 SINE MIR 26 193 -15 202 224 0 0 chr11 126589295 126589344 -24194209 + T-rich Low_complexity Low_complexity 1 49 0 203 295 70 0 chr11 126589398 126589527 -24194026 + (CATATA)n Simple_repeat Simple_repeat 4 141 0 237 119 0 0 chr11 126589532 126589574 -24193979 + (GA)n Simple_repeat Simple_repeat 1 42 0 251 202 12 71 chr11 126590244 126590328 -24193225 + MIR SINE MIR 91 169 -93 482 357 16 0 chr11 126591885 126592070 -24191483 + MIR SINE MIR 24 211 -51 216 0 0 0 chr11 126592257 126592281 -24191272 + (A)n Simple_repeat Simple_repeat 1 24 0 6113 110 0 0 chr11 126593118 126594144 -24189409 - L1PA14 LINE L1 -9 6152 5128 352 297 23 46 chr11 126594507 126594593 -24188960 - MIR SINE MIR -17 245 163 2330 98 0 3 chr11 126594593 126594889 -24188664 - AluSg SINE Alu -15 295 1 352 297 23 46 chr11 126594889 126594977 -24188576 - MIR SINE MIR -99 163 75 1033 284 137 35 chr11 126594986 126595294 -24188259 - L2 LINE L2 -559 2755 2480 2815 178 13 31 chr11 126595294 126595845 -24187708 + MLT1F LTR MaLR 2 542 0 1033 284 137 35 chr11 126595845 126596053 -24187500 - L2 LINE L2 -834 2480 2186 257 289 13 0 chr11 126596073 126596149 -24187404 - L2 LINE L2 -220 3052 2976 22 35 0 0 chr11 126597573 126597602 -24185951 + AT_rich Low_complexity Low_complexity 1 29 0 1004 152 51 34 chr11 126598047 126598367 -24185186 + MSTD LTR MaLR 1 396 0 270 0 0 0 chr11 126598462 126598492 -24185061 + (CAA)n Simple_repeat Simple_repeat 2 31 0 25 75 0 0 chr11 126598643 126598696 -24184857 + AT_rich Low_complexity Low_complexity 1 53 0 989 171 0 0 chr11 126598700 126598846 -24184707 + FRAM SINE Alu 1 146 -30 1245 247 29 8 chr11 126598861 126599237 -24184316 - L1ME2 LINE L1 -17 6147 5764 1855 157 20 0 chr11 126599331 126599625 -24183928 - AluJo SINE Alu -12 300 1 2153 85 20 10 chr11 126600092 126600385 -24183168 - AluSq SINE Alu -13 300 5 686 156 7 78 chr11 126600458 126600612 -24182941 - FLAM_C SINE Alu 0 143 1 2380 92 0 3 chr11 126600616 126600919 -24182634 - AluY SINE Alu -9 302 1 13475 148 22 63 chr11 126600919 126604673 -24178880 - L1 LINE L1 -3533 4032 16 3281 123 66 14 chr11 126604823 126605814 -24177739 + Tigger3b DNA MER2_type 21 1232 0 997 132 5 29 chr11 126606444 126606649 -24176904 + L1MA4 LINE L1 6101 6300 0 293 345 58 6 chr11 126606672 126606846 -24176707 - L1M4 LINE L1 -1997 4149 3967 22 99 0 0 chr11 126606856 126606927 -24176626 + AT_rich Low_complexity Low_complexity 1 71 0 313 286 36 36 chr11 126606994 126607194 -24176359 - L1M4 LINE L1 -2420 3726 3526 22 80 0 0 chr11 126607584 126607634 -24175919 + AT_rich Low_complexity Low_complexity 1 50 0 3310 218 36 38 chr11 126607798 126609150 -24174403 - L1ME2 LINE L1 0 6147 4788 382 226 128 73 chr11 126609330 126609494 -24174059 + MER5A DNA MER1_type 17 189 0 831 184 25 6 chr11 126610163 126610321 -24173232 - MER20 DNA MER1_type 0 219 59 569 266 100 68 chr11 126610408 126611059 -24172494 - L1ME2 LINE L1 -4862 1257 586 400 159 125 0 chr11 126611110 126611198 -24172355 - MER76 LTR ERV -303 385 287 390 174 47 35 chr11 126611170 126611256 -24172297 - MER76 LTR ERV -601 87 1 * 901 274 47 67 chr11 126611286 126612008 -24171545 + HAL1 LINE L1 668 1375 -1132 1933 279 147 9 chr11 126612014 126612703 -24170850 + L1PA13 LINE L1 475 1258 -5529 14826 152 16 21 chr11 126612706 126618121 -24165432 + L1PA13 LINE L1 1396 6809 -5 1066 258 163 43 chr11 126618171 126618401 -24165152 + HAL1 LINE L1 1425 1626 -881 1643 162 50 26 chr11 126618401 126618704 -24164849 - AluJo SINE Alu -2 310 1 1066 258 163 43 chr11 126618704 126619269 -24164284 + HAL1 LINE L1 1626 2316 -191 253 220 55 110 chr11 126619581 126619690 -24163863 + MLT1J LTR MaLR 303 405 -106 2193 167 63 0 chr11 126619804 126620199 -24163354 + MSTB LTR MaLR 1 420 -6 251 266 56 63 chr11 126620213 126620356 -24163197 + HAL1 LINE L1 2360 2501 -6 279 336 101 20 chr11 126620404 126620553 -24163000 + L2 LINE L2 2748 2908 -406 406 253 165 18 chr11 126620588 126620758 -24162795 - LTR33 LTR ERVL -4 517 323 499 268 123 21 chr11 126622228 126622471 -24161082 - L1MC4a LINE L1 -1828 5980 5713 1815 172 10 0 chr11 126622575 126622872 -24160681 - AluJo SINE Alu -12 300 1 21 36 0 0 chr11 126622895 126622923 -24160630 + AT_rich Low_complexity Low_complexity 1 28 0 354 237 148 82 chr11 126623163 126623420 -24160133 - HAL1b LINE L1 -506 842 569 571 296 24 6 chr11 126624164 126624333 -24159220 - MIR SINE MIR -84 178 7 180 0 0 0 chr11 126624754 126624774 -24158779 + (TTA)n Simple_repeat Simple_repeat 2 21 0 433 299 121 53 chr11 126624936 126625291 -24158262 + L2 LINE L2 2892 3270 -2 296 258 194 0 chr11 126625757 126625850 -24157703 - L2 LINE L2 -2 3311 3201 421 296 31 13 chr11 126627744 126627903 -24155650 - L2 LINE L2 -210 3062 2901 520 171 38 9 chr11 126627965 126628070 -24155483 - L1MA9 LINE L1 -38 6274 6167 452 117 0 0 chr11 126628070 126628147 -24155406 - AluY SINE Alu -7 303 227 884 68 98 23 chr11 126628153 126628285 -24155268 - AluY SINE Alu -169 142 1 3065 163 56 30 chr11 126628287 126628927 -24154626 - L1MA9 LINE L1 -139 6173 5517 1232 228 38 91 chr11 126629195 126629886 -24153667 - L1MC5 LINE L1 -737 7224 6562 21 36 0 0 chr11 126629902 126629930 -24153623 + AT_rich Low_complexity Low_complexity 1 28 0 1088 290 123 19 chr11 126632065 126632520 -24151033 - MLT1J LTR MaLR 0 615 5 1891 168 170 0 chr11 126633079 126633461 -24150092 + LTR47A LTR ERVL 6 452 0 1644 206 120 28 chr11 126633483 126633548 -24150005 + MLT1D LTR MaLR 4 62 -443 1516 164 144 126 chr11 126633548 126634126 -24149427 + LTR4 LTR ERV1 1 588 0 1644 206 120 28 chr11 126634126 126634520 -24149033 + MLT1D LTR MaLR 62 505 0 265 415 17 11 chr11 126634670 126634846 -24148707 + L2 LINE L2 2698 2874 -440 350 187 11 22 chr11 126634905 126634996 -24148557 - MER53 DNA DNA -5 184 95 211 279 0 0 chr11 126635269 126635312 -24148241 + L2 LINE L2 3219 3261 -11 536 196 0 0 chr11 126635312 126635414 -24148139 + U13 snRNA snRNA 1 102 -2 262 386 81 18 chr11 126636309 126636690 -24146863 + L2 LINE L2 2489 2893 -421 357 296 26 0 chr11 126636692 126636807 -24146746 + L2 LINE L2 3193 3310 -3 385 354 62 5 chr11 126637868 126638063 -24145490 - L2 LINE L2 -609 2705 2500 203 125 0 42 chr11 126639276 126639324 -24144229 + (TTA)n Simple_repeat Simple_repeat 2 47 0 264 358 35 40 chr11 126640057 126640230 -24143323 + MER5B DNA MER1_type 1 172 -6 210 194 0 56 chr11 126640590 126640662 -24142891 + A-rich Low_complexity Low_complexity 4 71 0 208 277 15 0 chr11 126640895 126640960 -24142593 + (TA)n Simple_repeat Simple_repeat 1 66 0 43751 41 2 2 chr11 126641485 126647630 -24135923 + L1PA4 LINE L1 2 6155 0 1528 94 5 5 chr11 126648238 126648439 -24135114 - AluSq SINE Alu -112 201 1 310 246 32 16 chr11 126648457 126648583 -24134970 + L1ME3A LINE L1 5757 5884 -286 1714 232 65 84 chr11 126648809 126649614 -24133939 + L1MC3 LINE L1 47 835 -5235 2204 103 21 24 chr11 126649624 126649964 -24133589 - MER4E LTR ERV1 0 766 428 292 50 25 0 chr11 126649940 126649980 -24133573 - MER4E LTR ERV1 -725 41 1 * 337 336 42 10 chr11 126650081 126650370 -24133183 - L1M4 LINE L1 -3499 2647 2350 414 310 92 28 chr11 126650374 126650800 -24132753 + HAL1b LINE L1 419 871 -477 1397 151 58 109 chr11 126651156 126651291 -24132262 + AluJb SINE Alu 1 141 -161 1787 104 0 36 chr11 126651291 126651542 -24132011 + AluSx SINE Alu 35 276 -36 1397 151 58 109 chr11 126651542 126651717 -24131836 + AluJb SINE Alu 141 295 -7 10269 198 50 21 chr11 126651815 126653875 -24129678 + L1MC3 LINE L1 3968 5968 -1751 2151 118 0 7 chr11 126653875 126654172 -24129381 - AluSc SINE Alu -14 295 1 10269 198 50 21 chr11 126654172 126654652 -24128901 + L1MC3 LINE L1 5968 6433 -1286 870 158 0 0 chr11 126654652 126654785 -24128768 - FLAM_C SINE Alu 0 133 1 10269 198 50 21 chr11 126654785 126655636 -24127917 + L1MC3 LINE L1 6433 7463 -256 2067 128 3 3 chr11 126655636 126655933 -24127620 + AluSx SINE Alu 1 297 -15 10269 198 50 21 chr11 126655933 126656057 -24127496 + L1MC3 LINE L1 7463 7582 -137 305 222 11 11 chr11 126656092 126656182 -24127371 + L1MC2 LINE L1 6255 6344 0 1525 292 101 51 chr11 126656212 126658857 -24124696 + L1M4 LINE L1 2315 5092 -1054 298 323 48 16 chr11 126659016 126659202 -24124351 - L2 LINE L2 -1407 1907 1716 198 208 0 0 chr11 126659987 126660040 -24123513 + GA-rich Low_complexity Low_complexity 2 54 0 283 317 168 0 chr11 126660567 126660668 -24122885 + L2 LINE L2 3153 3270 -2 187 393 22 0 chr11 126661850 126661939 -24121614 + L2 LINE L2 2230 2320 -994 694 274 5 21 chr11 126661948 126662134 -24121419 - MER63A DNA MER1_type -1 209 27 317 232 82 44 chr11 126662351 126662507 -24121046 + MLT1J LTR MaLR 35 160 -286 1815 219 58 9 chr11 126662593 126663059 -24120494 - Charlie4a DNA MER1_type -2 506 18 1864 214 48 70 chr11 126663377 126663415 -24120138 - L1ME1 LINE L1 -6 6094 6057 2154 96 3 17 chr11 126663415 126663708 -24119845 - AluSc SINE Alu -20 289 1 1864 214 48 70 chr11 126663708 126664267 -24119286 - L1ME1 LINE L1 -43 6057 5510 418 208 72 32 chr11 126664258 126664383 -24119170 - L1ME1 LINE L1 -1521 4559 4430 * 721 281 95 66 chr11 126664458 126664900 -24118653 - L1ME1 LINE L1 -5547 523 69 247 254 92 7 chr11 126664935 126665077 -24118476 - L1MEd LINE L1 -4088 2519 2366 2215 111 0 3 chr11 126665080 126665377 -24118176 - AluSx SINE Alu -16 296 1 607 240 0 0 chr11 126665640 126665765 -24117788 - FLAM_A SINE Alu -9 133 9 412 18 35 0 chr11 126665800 126665857 -24117696 + (TA)n Simple_repeat Simple_repeat 1 59 0 316 279 60 14 chr11 126665867 126666106 -24117447 - L1MEd LINE L1 -4575 1851 1680 182 236 0 14 chr11 126666347 126666419 -24117134 + (TA)n Simple_repeat Simple_repeat 1 71 0 445 241 56 76 chr11 126666541 126666840 -24116713 - L1 LINE L1 -2032 4114 3822 320 340 62 62 chr11 126666905 126667358 -24116195 + L1ME4a LINE L1 5533 5985 -136 1809 141 36 20 chr11 126668444 126668750 -24114803 - AluJo SINE Alu -1 311 1 1054 176 32 0 chr11 126668955 126669176 -24114377 - L1MC1 LINE L1 -323 6010 5783 318 169 0 42 chr11 126669370 126669441 -24114112 + MIR SINE MIR 180 247 -15 353 188 0 50 chr11 126669496 126669576 -24113977 - L1MD2 LINE L1 -462 5897 5822 246 319 26 0 chr11 126669759 126669872 -24113681 - HAL1 LINE L1 -898 1889 1774 409 272 72 92 chr11 126669994 126670419 -24113134 - L1MEd LINE L1 -1307 1480 938 292 284 87 37 chr11 126670877 126671095 -24112458 - MLT1K LTR MaLR -38 550 322 207 184 0 41 chr11 126671532 126671581 -24111972 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 5631 85 22 8 chr11 126671669 126672592 -24110961 + L1PB1 LINE L1 5156 6091 -60 392 300 41 75 chr11 126673570 126673863 -24109690 - L2 LINE L2 -5 3308 3026 2236 309 86 21 chr11 126673894 126674879 -24108674 - L2 LINE L2 -553 2761 1713 192 40 0 0 chr11 126674881 126674906 -24108647 + (TC)n Simple_repeat Simple_repeat 2 26 0 410 295 14 57 chr11 126675069 126675279 -24108274 + LTR41 LTR ERVL 2 202 -571 294 219 26 53 chr11 126675729 126675843 -24107710 + LTR41 LTR ERVL 657 767 -6 306 305 0 0 chr11 126676658 126676740 -24106813 + CT-rich Low_complexity Low_complexity 4 85 0 507 338 66 24 chr11 126676740 126677177 -24106376 + L2 LINE L2 2740 3303 -10 513 209 70 0 chr11 126677812 126677927 -24105626 - FRAM SINE Alu -13 163 41 666 259 69 29 chr11 126678018 126678411 -24105142 + LTR30 LTR ERV1 197 469 -24 294 139 0 0 chr11 126678432 126678475 -24105078 - Alu SINE Alu -257 43 1 229 250 0 59 chr11 126679035 126679103 -24104450 + L2 LINE L2 3250 3313 0 1104 155 5 0 chr11 126679848 126680042 -24103511 + L1P5 LINE L1 3 197 -6666 * 13408 193 45 11 chr11 126680039 126683781 -24099772 + L1P5 LINE L1 1071 5191 -1676 225 0 0 0 chr11 126683781 126683806 -24099747 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 13408 193 45 11 chr11 126683806 126685169 -24098384 + L1P5 LINE L1 5191 6507 -360 317 276 23 0 chr11 126685193 126685280 -24098273 + L1MC4 LINE L1 6615 6703 -1339 327 115 13 26 chr11 126685285 126685363 -24098190 + (TA)n Simple_repeat Simple_repeat 2 78 0 2689 96 3 0 chr11 126685363 126685740 -24097813 + L1PB1 LINE L1 5773 6150 -1 212 273 0 65 chr11 126686628 126686705 -24096848 - MIR SINE MIR -107 155 84 464 259 54 63 chr11 126687074 126687168 -24096385 - MIR SINE MIR -14 248 155 2496 140 49 2 chr11 126687168 126687575 -24095978 - MSTB LTR MaLR 0 426 1 464 259 54 63 chr11 126687575 126687685 -24095868 - MIR SINE MIR -107 155 46 769 285 87 0 chr11 126687788 126687995 -24095558 - MIR SINE MIR -30 232 8 25 0 0 0 chr11 126692972 126692997 -24090556 + AT_rich Low_complexity Low_complexity 1 25 0 1243 161 40 16 chr11 126693493 126693778 -24089775 + L1M4c LINE L1 2401 2694 -3688 1626 204 28 61 chr11 126693846 126694504 -24089049 + LTR9 LTR ERV1 1 596 -16 30547 138 15 6 chr11 126694535 126699894 -24083659 + HUERS-P3 LTR ERV1 15 5506 -3413 1317 117 0 0 chr11 126699917 126700105 -24083448 + HUERS-P3 LTR ERV1 7583 7770 -1149 6768 144 23 5 chr11 126700107 126700698 -24082855 + L1MA3 LINE L1 3881 4460 -1845 264 30 0 0 chr11 126700698 126700731 -24082822 + (CA)n Simple_repeat Simple_repeat 2 34 0 6768 144 23 5 chr11 126700731 126702519 -24081034 + L1MA3 LINE L1 4460 6305 0 207 200 0 0 chr11 126702971 126703016 -24080537 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 479 258 30 52 chr11 126705198 126705469 -24078084 + L1MEc LINE L1 1921 2185 -4211 313 137 0 0 chr11 126705535 126705586 -24077967 - MER58 DNA MER1_type 0 2420 2370 1261 237 125 36 chr11 126705586 126706034 -24077519 + L1MD3 LINE L1 6509 6996 -999 8151 162 39 33 chr11 126706071 126707681 -24075872 - MSTA-int LTR MaLR -32 1619 1 2505 135 54 5 chr11 126707681 126708089 -24075464 - MSTA LTR MaLR 0 428 1 1580 255 71 60 chr11 126708089 126709084 -24074469 + L1MD3 LINE L1 6990 7995 0 2020 158 6 0 chr11 126709280 126709616 -24073937 - L1PB3 LINE L1 -2 6152 5815 53 17 0 0 chr11 126709616 126709676 -24073877 + AT_rich Low_complexity Low_complexity 1 60 0 349 135 64 4 chr11 126709676 126709968 -24073585 + (TA)n Simple_repeat Simple_repeat 1 309 0 491 58 76 35 chr11 126709984 126710156 -24073397 + (TA)n Simple_repeat Simple_repeat 2 180 0 365 78 101 23 chr11 126710191 126710676 -24072877 + (TA)n Simple_repeat Simple_repeat 1 522 0 32 106 0 0 chr11 126710729 126710852 -24072701 + AT_rich Low_complexity Low_complexity 1 123 0 24 96 0 0 chr11 126711047 126711120 -24072433 + AT_rich Low_complexity Low_complexity 1 73 0 40007 42 23 2 chr11 126733847 126739867 -24043686 + L1PA3 LINE L1 3 6155 0 35 24 0 0 chr11 126740199 126740241 -24043312 + AT_rich Low_complexity Low_complexity 1 42 0 253 154 45 9 chr11 126740251 126740361 -24043192 + (TATAA)n Simple_repeat Simple_repeat 1 114 0 317 209 58 23 chr11 126740377 126740463 -24043090 + L1MC4 LINE L1 6616 6704 -1338 324 114 48 9 chr11 126740524 126740629 -24042924 + (TA)n Simple_repeat Simple_repeat 1 109 0 237 167 24 12 chr11 126740643 126740727 -24042826 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 * 316 136 39 10 chr11 126740711 126740814 -24042739 + (TA)n Simple_repeat Simple_repeat 1 106 0 547 71 71 12 chr11 126740838 126741007 -24042546 + (TA)n Simple_repeat Simple_repeat 2 180 0 289 175 47 0 chr11 126741014 126741229 -24042324 + (TATAA)n Simple_repeat Simple_repeat 1 225 0 185 121 50 57 chr11 126741236 126741377 -24042176 + T-rich Low_complexity Low_complexity 4 143 0 * 193 123 77 0 chr11 126741376 126741441 -24042112 + (TA)n Simple_repeat Simple_repeat 1 70 0 382 136 52 26 chr11 126741444 126741599 -24041954 + (TTATA)n Simple_repeat Simple_repeat 5 163 0 41534 48 1 1 chr11 126741649 126747804 -24035749 - L1PA3 LINE L1 -3 6152 1 205 167 24 48 chr11 126747812 126747896 -24035657 + (TTATA)n Simple_repeat Simple_repeat 2 83 0 412 101 71 24 chr11 126747896 126748064 -24035489 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 24 0 0 0 chr11 126748070 126748094 -24035459 + AT_rich Low_complexity Low_complexity 1 24 0 416 117 21 69 chr11 126748094 126748282 -24035271 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 275 96 90 13 chr11 126748303 126748459 -24035094 + (TA)n Simple_repeat Simple_repeat 1 168 0 34 24 0 0 chr11 126748475 126748516 -24035037 + AT_rich Low_complexity Low_complexity 1 41 0 2650 149 65 0 chr11 126748533 126749125 -24034428 - L1P5 LINE L1 -360 5794 5163 320 250 20 34 chr11 126749329 126749477 -24034076 + L1MEd LINE L1 997 1142 -4977 268 238 62 12 chr11 126749512 126749592 -24033961 + L1MEd LINE L1 2664 2747 -3382 435 330 33 2 chr11 126749608 126750005 -24033548 + L1MEd LINE L1 2886 3294 -2835 1331 175 41 11 chr11 126750215 126750484 -24033069 + L1MC3 LINE L1 7155 7431 -354 9927 81 17 3 chr11 126750509 126752668 -24030885 - L1PA7 LINE L1 -46 6108 3923 275 298 110 4 chr11 126752663 126752891 -24030662 + L1MEd LINE L1 4303 4554 -1575 * 651 318 82 55 chr11 126752904 126753203 -24030350 + L1MEd LINE L1 4614 4903 -1226 2184 143 3 0 chr11 126753203 126753511 -24030042 + AluSx SINE Alu 1 309 -3 651 318 82 55 chr11 126753511 126753831 -24029722 + L1MEd LINE L1 4903 5250 -879 471 290 93 33 chr11 126753835 126754169 -24029384 + L1MB8 LINE L1 5272 5625 -2183 232 249 21 125 chr11 126754377 126754666 -24028887 - L1M4 LINE L1 -2098 4048 3790 276 306 81 32 chr11 126755428 126755738 -24027815 - L1M4 LINE L1 -2414 3732 3408 1850 161 0 0 chr11 126755876 126756183 -24027370 - AluSg SINE Alu 0 307 1 444 184 25 194 chr11 126756231 126756427 -24027126 + MER21B LTR ERV1 1 163 -700 * 1035 227 24 90 chr11 126756423 126756802 -24026751 - MLT2B1 LTR ERVL -163 357 4 3038 128 34 73 chr11 126756804 126757444 -24026109 - ERVL-B1 LTR ERVL -8 5756 5142 1341 210 10 0 chr11 126757448 126757757 -24025796 + L1MB8 LINE L1 5673 5984 -194 2185 274 122 22 chr11 126758200 126759240 -24024313 + L1MCc LINE L1 19 1162 -5261 28 48 0 0 chr11 126759257 126759299 -24024254 + AT_rich Low_complexity Low_complexity 1 42 0 5522 80 75 12 chr11 126759302 126760079 -24023474 - LTR12 LTR ERV1 0 826 1 529 253 121 27 chr11 126760258 126760515 -24023038 - Charlie2 DNA MER1_type -2537 325 45 421 344 58 0 chr11 126760604 126760793 -24022760 + MIR SINE MIR 63 262 0 460 235 74 0 chr11 126760969 126761118 -24022435 - Charlie8 DNA MER1_type -2142 275 116 2331 75 27 3 chr11 126761717 126762010 -24021543 - AluY SINE Alu -11 300 1 223 307 89 45 chr11 126762116 126762295 -24021258 - L2 LINE L2 -258 3014 2828 202 338 14 0 chr11 126762447 126762521 -24021032 + MIR SINE MIR 48 122 -140 6154 75 1 6 chr11 126762525 126763920 -24019633 - L1PA8A LINE L1 -2 6129 4744 4563 124 44 7 chr11 126763920 126764691 -24018862 + L1PA8A LINE L1 3929 4728 -1418 239 257 129 20 chr11 126764695 126764796 -24018757 + MIR SINE MIR 119 230 -32 612 117 0 0 chr11 126764799 126764902 -24018651 + L1P LINE L1 4270 4372 -1774 2240 79 0 7 chr11 126765016 126765296 -24018257 + AluY SINE Alu 21 298 -13 1587 200 62 46 chr11 126765450 126765950 -24017603 + Charlie4a DNA MER1_type 1 508 0 960 257 89 56 chr11 126766285 126766802 -24016751 + L1ME1 LINE L1 63 596 -5827 814 243 39 45 chr11 126766934 126767702 -24015851 + L1ME1 LINE L1 809 1761 -5180 * 3216 246 83 27 chr11 126767697 126769515 -24014038 + L1ME1 LINE L1 3618 5514 -1427 1281 291 94 0 chr11 126769530 126769925 -24013628 - MER70B LTR ERVL -143 435 4 704 259 5 5 chr11 126769948 126770137 -24013416 + L1ME1 LINE L1 5527 5715 -1226 6382 190 103 16 chr11 126770151 126771467 -24012086 + L1M1 LINE L1 16 1446 -6119 1203 29 29 6 chr11 126771757 126771930 -24011623 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 1824 210 209 48 chr11 126771935 126772692 -24010861 + L1ME1 LINE L1 6080 6956 -5 2535 147 10 10 chr11 126772837 126773252 -24010301 + MER47B DNA MER2_type 4 418 0 288 308 128 15 chr11 126774045 126774178 -24009375 - MIR SINE MIR -12 250 103 224 338 108 25 chr11 126774735 126774892 -24008661 + MIR3 SINE MIR 2 171 -37 29 47 0 0 chr11 126775481 126775524 -24008029 + AT_rich Low_complexity Low_complexity 1 43 0 2666 183 75 8 chr11 126775631 126776150 -24007403 + MLT1F1 LTR MaLR 14 567 0 671 168 179 32 chr11 126776317 126776507 -24007046 + LTR50 LTR ERVL 1 218 -577 554 151 151 0 chr11 126776528 126776634 -24006919 + MLT1F LTR MaLR 421 542 0 572 290 117 37 chr11 126776981 126777281 -24006272 + L1M4c LINE L1 16 339 -6203 6330 241 67 16 chr11 126777328 126778023 -24005530 + L1M4b LINE L1 29 687 -6272 872 86 78 0 chr11 126778023 126778151 -24005402 - MER85 DNA T2_type -1 138 1 6330 241 67 16 chr11 126778151 126778608 -24004945 + L1M4b LINE L1 687 1119 -5840 1593 194 16 7 chr11 126778608 126778912 -24004641 + AluJo SINE Alu 1 307 -5 6330 241 67 16 chr11 126778912 126779232 -24004321 + L1M4b LINE L1 1119 1421 -5538 330 115 0 0 chr11 126779232 126779293 -24004260 + (TA)n Simple_repeat Simple_repeat 2 62 0 6330 241 67 16 chr11 126779293 126780039 -24003514 + L1M4b LINE L1 1421 2353 -4606 2097 135 137 8 chr11 126780060 126780439 -24003114 - MSTA LTR MaLR 0 428 1 3896 237 47 9 chr11 126780548 126781263 -24002290 + L1M4b LINE L1 2853 3605 -3352 201 26 51 26 chr11 126781263 126781302 -24002251 + (TA)n Simple_repeat Simple_repeat 1 40 0 3896 237 47 9 chr11 126781302 126781843 -24001710 + L1M4b LINE L1 3605 4124 -2833 454 184 19 19 chr11 126781844 126781947 -24001606 + MER4A LTR ERV1 1 103 -561 380 259 115 27 chr11 126781975 126782208 -24001345 + LTR34 LTR ERV1 105 280 -317 279 0 0 0 chr11 126782289 126782320 -24001233 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 410 228 43 52 chr11 126782613 126782857 -24000696 + L1M4c LINE L1 2357 2608 -4036 * 9123 160 30 18 chr11 126782853 126785629 -23997924 + L1MA9 LINE L1 4308 7122 -1 342 236 0 18 chr11 126785888 126785998 -23997555 + (TA)n Simple_repeat Simple_repeat 1 108 0 357 271 12 71 chr11 126786863 126787033 -23996520 - MER112 DNA MER1_type -8 252 93 204 97 0 0 chr11 126787037 126787068 -23996485 + (TG)n Simple_repeat Simple_repeat 1 31 0 204 40 0 0 chr11 126787430 126787455 -23996098 + (TG)n Simple_repeat Simple_repeat 2 26 0 194 0 39 0 chr11 126787498 126787524 -23996029 + (TGGGGG)n Simple_repeat Simple_repeat 5 31 0 388 288 60 38 chr11 126788802 126788986 -23994567 + MER5A DNA MER1_type 2 189 0 286 428 6 11 chr11 126789246 126789426 -23994127 + L2 LINE L2 2487 2665 -649 316 311 0 0 chr11 126789428 126789502 -23994051 - L2 LINE L2 -3 3310 3237 6914 92 44 19 chr11 126789845 126790947 -23992606 - MER4-int LTR ERV1 -1633 4965 3837 1893 181 28 58 chr11 126790946 126791481 -23992072 - MER4-int LTR ERV1 -2917 3681 3163 * 490 233 26 105 chr11 126791482 126791615 -23991938 + L2 LINE L2 3098 3207 -106 2079 82 0 0 chr11 126791615 126791871 -23991682 - AluSc SINE Alu -15 294 39 490 233 26 105 chr11 126791871 126791965 -23991588 + L2 LINE L2 3207 3307 -6 606 297 121 53 chr11 126791977 126792329 -23991224 - L2 LINE L2 -688 2626 2233 2445 79 0 0 chr11 126792329 126792633 -23990920 + AluY SINE Alu 1 304 -7 606 297 121 53 chr11 126792633 126792751 -23990802 - L2 LINE L2 -1081 2233 2124 215 364 30 47 chr11 126793065 126793301 -23990252 - L2 LINE L2 -2569 745 514 1776 238 3 6 chr11 126793390 126793755 -23989798 - MLT1A1 LTR MaLR -1 364 1 336 167 33 0 chr11 126793755 126793815 -23989738 - MLT1A1 LTR MaLR -303 62 1 1215 206 50 18 chr11 126794013 126794290 -23989263 + L1MD1 LINE L1 5904 6189 -53 13771 218 31 15 chr11 126794299 126799606 -23983947 - L1PA16 LINE L1 -7 6862 1423 1336 204 15 48 chr11 126800039 126800373 -23983180 - L1PA16 LINE L1 -6083 766 444 230 348 34 34 chr11 126800397 126800515 -23983038 - L1M2 LINE L1 -6066 783 666 1040 323 38 3 chr11 126800609 126800977 -23982576 - L1M2 LINE L1 -6399 450 70 536 163 0 0 chr11 126800981 126801073 -23982480 - AluSp/q SINE Alu -3 310 219 305 192 64 39 chr11 126801076 126801154 -23982399 - L1M2 LINE L1 -6768 81 2 420 81 0 0 chr11 126801156 126801218 -23982335 + L1MD1 LINE L1 6173 6234 -8 702 275 35 60 chr11 126801656 126802020 -23981533 + L1ME LINE L1 737 1106 -5310 1771 218 48 46 chr11 126802021 126802498 -23981055 - MLT1D LTR MaLR 0 505 28 3088 197 35 28 chr11 126802498 126803764 -23979789 - L1MCa LINE L1 -4851 1194 474 1062 270 20 34 chr11 126803756 126803895 -23979658 + L1ME LINE L1 2355 2494 -3932 * 2083 105 30 13 chr11 126803895 126804015 -23979538 + AluSg SINE Alu 1 118 -192 351 0 0 0 chr11 126804015 126804054 -23979499 + (CA)n Simple_repeat Simple_repeat 2 40 0 2083 105 30 13 chr11 126804054 126804238 -23979315 + AluSg SINE Alu 118 310 0 1603 180 43 26 chr11 126804241 126804546 -23979007 + AluJb SINE Alu 1 310 -2 1062 270 20 34 chr11 126804546 126804933 -23978620 + L1ME LINE L1 2496 2875 -3551 1734 120 19 71 chr11 126804995 126805320 -23978233 - MER44D DNA MER2_type 0 609 32 1526 219 39 52 chr11 126805322 126805729 -23977824 + MLT1C LTR MaLR 64 465 -2 489 262 0 0 chr11 126805732 126805858 -23977695 + L1ME LINE L1 2871 2996 -3430 535 358 55 14 chr11 126807348 126807714 -23975839 + L2 LINE L2 2482 2862 -452 2206 115 0 0 chr11 126807983 126808279 -23975274 - AluSx SINE Alu -16 296 1 222 333 0 0 chr11 126808279 126808345 -23975208 - L2 LINE L2 -3 3269 3204 517 233 167 42 chr11 126808523 126808763 -23974790 - L2 LINE L2 -239 3074 2805 278 260 14 14 chr11 126808788 126808861 -23974692 + L2 LINE L2 3236 3308 -5 463 196 134 0 chr11 126808894 126809006 -23974547 + MER103 DNA DNA 37 163 -3 21 0 0 0 chr11 126809311 126809332 -23974221 + AT_rich Low_complexity Low_complexity 1 21 0 1275 222 4 13 chr11 126809941 126810180 -23973373 - MER8 DNA MER2_type -2 237 1 710 262 60 39 chr11 126810690 126810923 -23972630 - MIR SINE MIR 0 262 25 181 376 59 0 chr11 126811239 126811324 -23972229 - L2 LINE L2 -47 3225 3136 712 246 0 37 chr11 126811545 126811736 -23971817 + MER5A DNA MER1_type 5 188 -1 593 49 12 0 chr11 126811838 126811919 -23971634 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 294 289 94 39 chr11 126812830 126812958 -23970595 - L2 LINE L2 -1 3271 3137 507 339 123 32 chr11 126813120 126813462 -23970091 + L3 LINE CR1 767 1139 -438 202 351 0 0 chr11 126813812 126813886 -23969667 + A-rich Low_complexity Low_complexity 1 74 0 351 0 0 0 chr11 126814252 126814291 -23969262 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 2210 117 0 13 chr11 126815257 126815566 -23967987 - AluSq SINE Alu -7 306 2 1028 154 12 0 chr11 126815570 126815732 -23967821 - AluSg/x SINE Alu -14 298 135 2542 158 7 2 chr11 126815734 126816171 -23967382 - L1MB3 LINE L1 -47 6136 5698 246 286 126 17 chr11 126816289 126816408 -23967145 + L3b LINE CR1 1184 1315 -268 574 115 0 0 chr11 126816725 126816843 -23966710 + AluSg/x SINE Alu 205 322 0 312 289 171 94 chr11 126816904 126817254 -23966299 - L3 LINE CR1 -190 1387 1011 782 157 88 0 chr11 126817256 126817403 -23966150 - MER3 DNA MER1_type -1 208 49 8023 198 37 44 chr11 126817763 126817802 -23965751 + L1MB2 LINE L1 2797 2835 -3336 2191 115 10 0 chr11 126817802 126818107 -23965446 + AluSg SINE Alu 2 309 -1 8023 198 37 44 chr11 126818107 126820305 -23963248 + L1MB2 LINE L1 2835 5040 -1131 289 54 0 0 chr11 126820305 126820342 -23963211 + U2 snRNA snRNA 1 37 -151 8023 198 37 44 chr11 126820342 126821434 -23962119 + L1MB2 LINE L1 5040 6138 -33 1082 205 70 26 chr11 126821598 126821827 -23961726 + MER8 DNA MER2_type 1 239 0 435 266 52 65 chr11 126822596 126822825 -23960728 - MLT1K LTR MaLR -10 578 353 2194 93 4 0 chr11 126822913 126823213 -23960340 + AluSg SINE Alu 1 301 0 297 330 28 0 chr11 126823217 126823323 -23960230 - MLT1K LTR MaLR -339 249 141 297 382 15 7 chr11 126824044 126824180 -23959373 + MER5B DNA MER1_type 17 153 -25 616 164 249 34 chr11 126825099 126825276 -23958277 + MER58C DNA MER1_type 1 215 0 919 202 29 34 chr11 126825418 126825626 -23957927 + MER63A DNA MER1_type 1 207 -3 295 351 30 55 chr11 126825646 126825881 -23957672 + MIR SINE MIR 5 232 -30 202 314 49 10 chr11 126826166 126826268 -23957285 + L2 LINE L2 3208 3313 0 572 281 158 27 chr11 126826313 126826534 -23957019 + MIR SINE MIR 13 262 0 321 160 0 33 chr11 126826825 126826915 -23956638 + L1MC4 LINE L1 6867 6917 -891 483 169 0 0 chr11 126826998 126827081 -23956472 + MLT1A1 LTR MaLR 1 83 -282 296 237 118 0 chr11 126828206 126828299 -23955254 + L2 LINE L2 1922 2025 -1289 1082 197 78 17 chr11 126828684 126828979 -23954574 + MER33 DNA MER1_type 1 313 -11 644 317 30 17 chr11 126829814 126830044 -23953509 - MIR SINE MIR -28 234 2 1934 144 57 38 chr11 126830291 126830659 -23952894 + THE1C LTR MaLR 1 375 0 322 258 11 11 chr11 126831464 126831553 -23952000 + GA-rich Low_complexity Low_complexity 3 91 0 422 310 23 0 chr11 126832268 126832397 -23951156 - MIR SINE MIR -84 178 47 21 0 0 0 chr11 126833063 126833084 -23950469 + AT_rich Low_complexity Low_complexity 1 21 0 196 274 20 0 chr11 126833379 126833430 -23950123 - MER5A DNA MER1_type 0 189 138 2387 186 9 13 chr11 126833436 126833899 -23949654 - MER73 LTR ERVL 0 644 184 345 203 0 0 chr11 126833900 126833964 -23949589 - L1ME LINE L1 -5541 529 466 871 128 7 7 chr11 126833964 126834113 -23949440 - MER73 LTR ERVL -460 184 36 231 0 0 26 chr11 126834113 126834147 -23949406 + L1PA6 LINE L1 6117 6150 0 225 0 0 0 chr11 126834147 126834172 -23949381 + (TA)n Simple_repeat Simple_repeat 2 26 0 1093 263 30 3 chr11 126834215 126834584 -23948969 - L1MEc LINE L1 -4688 1708 1330 614 172 0 0 chr11 126834591 126834690 -23948863 - AluJ/FLAM SINE Alu -213 99 1 3051 207 17 8 chr11 126834690 126835337 -23948216 - MLT1A1-int LTR MaLR -1081 654 2 1299 237 39 20 chr11 126835338 126835696 -23947857 - MLT1A1 LTR MaLR 0 365 1 341 305 84 7 chr11 126835854 126835961 -23947592 - HAL1 LINE L1 -179 2328 2204 464 0 18 0 chr11 126835961 126836017 -23947536 + (CA)n Simple_repeat Simple_repeat 2 58 0 341 305 84 7 chr11 126836017 126836063 -23947490 - HAL1 LINE L1 -303 2204 2163 1595 205 59 52 chr11 126836079 126836557 -23946996 - MLT1D LTR MaLR -24 481 1 688 258 101 11 chr11 126836558 126836826 -23946727 - HAL1 LINE L1 -369 2138 1847 853 181 12 0 chr11 126836841 126837001 -23946552 - MER58A DNA MER1_type -18 206 45 333 211 0 0 chr11 126837021 126837097 -23946456 + L1MD1 LINE L1 4783 4858 -1288 28 0 0 0 chr11 126837097 126837125 -23946428 + AT_rich Low_complexity Low_complexity 1 28 0 6486 162 21 4 chr11 126837125 126839378 -23944175 - L1PA16 LINE L1 -8 6158 3869 2513 219 40 41 chr11 126839381 126840140 -23943413 + L1MD1 LINE L1 5450 6207 -35 254 226 108 20 chr11 126840193 126840295 -23943258 - HAL1 LINE L1 -1245 1262 1152 476 248 165 14 chr11 126840304 126840522 -23943031 - L1ME1 LINE L1 -9 6157 5907 682 262 34 15 chr11 126840524 126840730 -23942823 + LTR16A LTR ERVL 241 450 0 488 277 102 92 chr11 126840735 126841266 -23942287 - HAL1 LINE L1 -1091 1416 881 207 0 0 0 chr11 126841293 126841316 -23942237 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2343 47 11 0 chr11 126841317 126841593 -23941960 - AluY SINE Alu -32 279 1 338 313 92 28 chr11 126842262 126842511 -23941042 - L1 LINE L1 -2545 3665 3401 2215 84 0 7 chr11 126843027 126843334 -23940219 + AluY SINE Alu 1 305 0 590 294 66 15 chr11 126843605 126843802 -23939751 + MIR SINE MIR 48 254 -8 7272 79 27 10 chr11 126844070 126845109 -23938444 - MER11C LTR ERVK -14 1057 1 34 55 0 0 chr11 126845626 126845681 -23937872 + AT_rich Low_complexity Low_complexity 1 55 0 495 319 42 14 chr11 126845681 126845897 -23937656 - MIR SINE MIR -1 261 40 2043 108 0 14 chr11 126846000 126846295 -23937258 + AluSx SINE Alu 1 291 -21 26 0 0 0 chr11 126847436 126847462 -23936091 + AT_rich Low_complexity Low_complexity 1 26 0 821 175 6 0 chr11 126847482 126847653 -23935900 + CT-rich Low_complexity Low_complexity 3 174 0 2392 152 60 14 chr11 126847657 126848143 -23935410 - L1MA9 LINE L1 -19 6293 5786 1759 156 3 26 chr11 126848143 126848482 -23935071 - MER44D DNA MER2_type 0 609 9 1167 192 0 73 chr11 126848499 126848801 -23934752 - L1MA9 LINE L1 -522 5790 5511 * 1404 252 16 0 chr11 126848796 126849173 -23934380 - L1 LINE L1 -3439 2771 2389 3454 234 85 13 chr11 126849202 126850974 -23932579 - L1 LINE L1 -4283 1928 1 232 217 0 50 chr11 126851524 126851584 -23931969 + MIR SINE MIR 105 161 -101 282 366 26 0 chr11 126851771 126851929 -23931624 - MIR3 SINE MIR -67 141 5 205 209 23 0 chr11 126851968 126852011 -23931542 + (TATG)n Simple_repeat Simple_repeat 2 45 0 303 196 0 0 chr11 126852011 126852067 -23931486 + L1MC4 LINE L1 6648 6703 -1339 * 336 281 0 42 chr11 126852055 126852151 -23931402 - L1MC4 LINE L1 -1337 6705 6614 1825 171 23 3 chr11 126852730 126853029 -23930524 + AluJb SINE Alu 1 305 -7 25 51 0 0 chr11 126853113 126853152 -23930401 + AT_rich Low_complexity Low_complexity 1 39 0 2143 166 38 26 chr11 126853353 126853780 -23929773 - MSTB1 LTR MaLR 0 432 1 23 0 0 0 chr11 126853785 126853808 -23929745 + AT_rich Low_complexity Low_complexity 1 23 0 34 84 0 0 chr11 126854172 126854255 -23929298 + AT_rich Low_complexity Low_complexity 1 83 0 2097 117 0 19 chr11 126854773 126855103 -23928450 + AluSc SINE Alu 1 309 0 283 268 83 32 chr11 126855344 126855501 -23928052 - MLT1I LTR MaLR -13 396 232 1381 189 34 19 chr11 126855624 126855647 -23927906 - L1MA8 LINE L1 -96 6195 6174 1569 144 104 45 chr11 126855647 126856001 -23927552 - THE1C LTR MaLR 0 375 1 1381 189 34 19 chr11 126856001 126856299 -23927254 - L1MA8 LINE L1 -117 6174 5869 281 167 0 0 chr11 126856374 126856428 -23927125 - L1MC4 LINE L1 -1 8041 7988 1811 245 57 7 chr11 126856435 126857487 -23926066 - L1MC4 LINE L1 -143 7899 6647 232 231 19 0 chr11 126857487 126857539 -23926014 + (TA)n Simple_repeat Simple_repeat 1 53 0 510 202 0 0 chr11 126857539 126857631 -23925922 + MER2 DNA MER2_type 1 92 -253 232 271 34 0 chr11 126857631 126857690 -23925863 - MER2 DNA MER2_type -2 343 283 402 202 128 0 chr11 126857786 126857895 -23925658 - L1MC4 LINE L1 -1433 6570 6440 496 280 38 101 chr11 126859070 126859488 -23924065 - MLT1I LTR MaLR 0 409 18 254 251 150 142 chr11 126859576 126859843 -23923710 - L2 LINE L2 -3 3310 3042 1789 180 121 40 chr11 126859857 126860312 -23923241 + MLT1D LTR MaLR 1 492 -13 3060 277 80 13 chr11 126860312 126861326 -23922227 - L2 LINE L2 -285 3028 1949 1650 165 54 4 chr11 126861327 126861606 -23921947 + AluJb SINE Alu 1 293 -19 325 298 153 8 chr11 126862157 126862281 -23921272 + MIR SINE MIR 12 153 -109 456 269 291 0 chr11 126863184 126863418 -23920135 - L2 LINE L2 -1349 1965 1664 676 167 13 6 chr11 126863799 126863939 -23919614 + (TCTA)n Simple_repeat Simple_repeat 2 145 -13 249 33 0 0 chr11 126863939 126863969 -23919584 + (TC)n Simple_repeat Simple_repeat 1 30 0 676 167 13 6 chr11 126863969 126863984 -23919569 + (TCTA)n Simple_repeat Simple_repeat 145 158 0 334 241 241 32 chr11 126864430 126864588 -23918965 + MIR SINE MIR 1 191 -71 207 373 0 0 chr11 126864934 126865009 -23918544 + MIR3 SINE MIR 106 180 -28 377 296 31 13 chr11 126865191 126865350 -23918203 - MER117 DNA MER1_type -35 162 1 206 308 0 19 chr11 126866762 126866814 -23916739 + MIR SINE MIR 47 97 -111 503 227 17 17 chr11 126866855 126866974 -23916579 + MER69 DNA AcHobo 29 147 -1079 392 201 47 7 chr11 126866975 126867124 -23916429 + (TA)n Simple_repeat Simple_repeat 1 155 0 265 195 12 12 chr11 126867226 126867308 -23916245 + (CA)n Simple_repeat Simple_repeat 2 83 0 225 65 0 0 chr11 126867307 126867338 -23916215 + (TC)n Simple_repeat Simple_repeat 1 31 0 * 885 272 19 0 chr11 126867450 126867663 -23915890 + MIR SINE MIR 12 228 -34 373 183 0 0 chr11 126869658 126869729 -23913824 - L1PA16 LINE L1 -17 6149 6079 510 333 127 40 chr11 126870088 126870467 -23913086 - L2 LINE L2 0 3272 2861 253 299 65 13 chr11 126870639 126870716 -23912837 + L2 LINE L2 3142 3222 -50 384 339 0 16 chr11 126870971 126871154 -23912399 - MER117 DNA MER1_type -15 182 3 223 313 0 62 chr11 126871807 126871883 -23911670 + CT-rich Low_complexity Low_complexity 3 71 -36 2056 107 19 0 chr11 126871883 126872154 -23911399 - AluSg SINE Alu -34 276 1 223 313 0 62 chr11 126872154 126872189 -23911364 + CT-rich Low_complexity Low_complexity 71 107 0 202 218 0 46 chr11 126873318 126873405 -23910148 + CT-rich Low_complexity Low_complexity 1 83 0 216 186 23 0 chr11 126873420 126873463 -23910090 + CT-rich Low_complexity Low_complexity 6 49 0 466 284 84 33 chr11 126874486 126874701 -23908852 + MIR SINE MIR 23 248 -14 1374 278 158 25 chr11 126874876 126875957 -23907596 - L2 LINE L2 -1 3312 2088 333 204 56 56 chr11 126876264 126876372 -23907181 - MLT1K LTR MaLR -347 241 134 28 0 0 0 chr11 126876441 126876469 -23907084 + AT_rich Low_complexity Low_complexity 1 28 0 1888 162 32 61 chr11 126877194 126877412 -23906141 - MLT1A1 LTR MaLR 0 365 161 2181 106 0 10 chr11 126877412 126877705 -23905848 - AluSc SINE Alu -19 290 1 1888 162 32 61 chr11 126877705 126877862 -23905691 - MLT1A1 LTR MaLR -204 161 1 19787 54 4 3 chr11 126879052 126881489 -23902064 + L1P LINE L1 24 2461 -3685 206 83 56 0 chr11 126881611 126881647 -23901906 + GA-rich Low_complexity Low_complexity 3 40 0 622 186 186 42 chr11 126881749 126881942 -23901611 + MER58A DNA MER1_type 4 224 0 2320 119 0 0 chr11 126882097 126882409 -23901144 - AluSx SINE Alu 0 312 1 24 0 0 0 chr11 126884104 126884128 -23899425 + AT_rich Low_complexity Low_complexity 1 24 0 207 220 0 0 chr11 126884420 126884470 -23899083 + CT-rich Low_complexity Low_complexity 4 53 0 1004 224 9 14 chr11 126884648 126884862 -23898691 + MER20 DNA MER1_type 7 219 0 255 208 0 0 chr11 126885139 126885192 -23898361 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 650 195 0 131 chr11 126885509 126885745 -23897808 + MIR SINE MIR 58 262 0 1153 143 38 19 chr11 126885902 126886112 -23897441 - MER20 DNA MER1_type -5 214 1 444 283 94 0 chr11 126886574 126886733 -23896820 + MIR SINE MIR 85 258 -4 1657 204 82 25 chr11 126886868 126887305 -23896248 + MLT1C LTR MaLR 6 467 0 659 283 61 4 chr11 126887930 126888160 -23895393 - L3 LINE CR1 -57 1520 1278 1523 224 162 80 chr11 126888663 126889211 -23894342 - MLT1G LTR MaLR 0 590 3 442 102 0 0 chr11 126891520 126891579 -23891974 - MER58 DNA MER1_type -1 2419 2361 1212 244 6 68 chr11 126891582 126891934 -23891619 - MLT2B3 LTR ERVL -2 552 223 334 123 18 0 chr11 126891934 126892052 -23891501 + GA-rich Low_complexity Low_complexity 1 120 0 2283 195 22 28 chr11 126892651 126893158 -23890395 + MLT1D LTR MaLR 1 504 -1 281 210 81 0 chr11 126893396 126893458 -23890095 + MIR SINE MIR 49 115 -147 272 195 23 23 chr11 126893867 126893954 -23889599 + (TTA)n Simple_repeat Simple_repeat 3 89 0 1922 113 20 14 chr11 126894733 126895025 -23888528 - AluSx SINE Alu -18 294 1 531 324 80 4 chr11 126896027 126896252 -23887301 + MIR SINE MIR 2 243 -19 1017 312 40 11 chr11 126896290 126896662 -23886891 - MLT1I LTR MaLR 0 409 27 188 333 14 0 chr11 126898080 126898149 -23885404 + L2 LINE L2 3184 3253 -19 192 282 48 78 chr11 126899597 126899700 -23883853 - L2 LINE L2 -243 3029 2930 237 263 132 0 chr11 126900061 126900137 -23883416 + LTR67 LTR ERVL 458 543 -14 359 248 114 13 chr11 126900259 126900408 -23883145 + L1ME4a LINE L1 5928 6091 -30 1343 191 3 53 chr11 126900444 126900764 -23882789 + AluJo SINE Alu 1 304 -8 266 165 72 10 chr11 126901756 126902049 -23881504 + (TA)n Simple_repeat Simple_repeat 1 311 0 436 89 0 0 chr11 126902127 126902183 -23881370 - FLAM_A SINE Alu -23 119 64 486 191 13 7 chr11 126902183 126902335 -23881218 + (TA)n Simple_repeat Simple_repeat 1 153 0 660 312 111 30 chr11 126902461 126903173 -23880380 - L2 LINE L2 0 3313 2531 1904 196 84 25 chr11 126904316 126904523 -23879030 + MLT1D LTR MaLR 1 194 -311 1723 125 62 38 chr11 126904523 126904811 -23878742 + AluJo SINE Alu 1 295 -17 1904 196 84 25 chr11 126904811 126905077 -23878476 + MLT1D LTR MaLR 194 502 -3 376 359 65 26 chr11 126905398 126905707 -23877846 - L2 LINE L2 -16 3256 2936 2511 165 32 24 chr11 126905723 126905826 -23877727 + L1MB3 LINE L1 5683 5784 -399 2006 116 18 4 chr11 126905826 126906133 -23877420 - AluSx SINE Alu 0 312 2 2511 165 32 24 chr11 126906133 126906525 -23877028 + L1MB3 LINE L1 5784 6183 0 1284 224 180 18 chr11 126906994 126907383 -23876170 - L1ME1 LINE L1 -66 6100 5649 2140 131 0 7 chr11 126907435 126907741 -23875812 + AluSx SINE Alu 1 304 -8 3154 283 108 26 chr11 126911069 126912785 -23870768 - L2 LINE L2 0 3313 1469 334 301 119 36 chr11 126913293 126913512 -23870041 + MIR SINE MIR 20 256 -6 198 0 0 0 chr11 126913763 126913785 -23869768 + (T)n Simple_repeat Simple_repeat 1 22 0 203 0 37 0 chr11 126914315 126914342 -23869211 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 589 64 0 13 chr11 126914558 126914636 -23868917 - MADE1 DNA Mariner -3 77 1 387 338 50 5 chr11 126915050 126915251 -23868302 - MIR SINE MIR -4 258 49 300 155 99 14 chr11 126916578 126916649 -23866904 + L3b LINE CR1 1290 1366 -217 210 37 0 0 chr11 126917677 126917704 -23865849 + (CA)n Simple_repeat Simple_repeat 2 28 0 1254 219 132 36 chr11 126917757 126917877 -23865676 - Charlie4a DNA MER1_type -1468 493 386 4142 52 0 2 chr11 126917877 126918376 -23865177 - L1PA5 LINE L1 -1 6153 5656 1254 219 132 36 chr11 126918376 126918702 -23864851 - Charlie4a DNA MER1_type -1575 386 4 1267 186 21 21 chr11 126918891 126919133 -23864420 + MER63B DNA MER1_type 6 247 -189 2032 182 17 11 chr11 126919544 126919906 -23863647 + MLT1A1 LTR MaLR 1 364 -1 2580 26 16 7 chr11 126921022 126921330 -23862223 - AluYb8 SINE Alu -7 311 1 273 287 103 97 chr11 126921353 126921653 -23861900 - L2 LINE L2 0 3272 2971 208 163 0 23 chr11 126921729 126921772 -23861781 + (TG)n Simple_repeat Simple_repeat 1 42 0 185 244 0 0 chr11 126922421 126922462 -23861091 + L2 LINE L2 2607 2647 -667 190 241 0 69 chr11 126922988 126923046 -23860507 + MIR3 SINE MIR 141 194 -14 715 235 22 118 chr11 126923694 126924060 -23859493 + L1MC4 LINE L1 7708 8038 -4 180 261 72 0 chr11 126924108 126924177 -23859376 + L2 LINE L2 1315 1388 -1926 521 240 33 8 chr11 126924182 126924303 -23859250 - MLT1I LTR MaLR 0 409 286 820 204 6 6 chr11 126924702 126924859 -23858694 + Tigger1 DNA MER2_type 1 157 -2261 * 1159 173 19 9 chr11 126924848 126925062 -23858491 + Tigger1 DNA MER2_type 2202 2417 -1 290 322 11 40 chr11 126925934 126926108 -23857445 + CT-rich Low_complexity Low_complexity 3 171 0 180 209 86 151 chr11 126926687 126926826 -23856727 - MIR SINE MIR -51 211 82 461 286 116 0 chr11 126927305 126927504 -23856049 + MIR SINE MIR 5 226 -36 5976 70 6 1 chr11 126927504 126928293 -23855260 - L1PA7 LINE L1 -1130 5016 4224 7139 55 4 6 chr11 126928293 126929429 -23854124 + L1PA7 LINE L1 5019 6153 -1 212 283 0 0 chr11 126930160 126930206 -23853347 - MIR3 SINE MIR -54 154 109 192 375 115 10 chr11 126932437 126932533 -23851020 + L3b LINE CR1 1440 1545 -38 1916 212 59 4 chr11 126933034 126933464 -23850089 + MLT2B2 LTR ERVL 1 467 -53 216 246 49 0 chr11 126934147 126934208 -23849345 + CT-rich Low_complexity Low_complexity 3 66 0 893 207 6 0 chr11 126935144 126935313 -23848240 - MSTB2 LTR MaLR -47 410 241 225 139 0 0 chr11 126935313 126935356 -23848197 + (A)n Simple_repeat Simple_repeat 1 43 0 558 271 23 0 chr11 126935361 126935494 -23848059 - MSTB2 LTR MaLR -229 228 93 2109 234 72 2 chr11 126936259 126936801 -23846752 - MER119 DNA MER1_type 0 583 4 501 220 210 11 chr11 126937168 126937354 -23846199 + MIR SINE MIR 3 225 -37 260 351 13 0 chr11 126937374 126937451 -23846102 - L2 LINE L2 -61 3211 3134 747 284 93 36 chr11 126937728 126938178 -23845375 - L2 LINE L2 -461 2853 2378 209 291 48 75 chr11 126940249 126940544 -23843009 - L2 LINE L2 -341 2973 2687 189 263 95 51 chr11 126940911 126941048 -23842505 - L2 LINE L2 -212 3060 2918 1239 151 48 2 chr11 126941426 126941713 -23841840 + MER2 DNA MER2_type 1 345 0 403 309 57 23 chr11 126941928 126942156 -23841397 - MIR SINE MIR -15 247 17 224 336 164 0 chr11 126943323 126943451 -23840102 + MIR3 SINE MIR 1 149 -59 412 223 43 13 chr11 126943464 126943607 -23839946 - MIR SINE MIR -32 230 3 584 221 174 7 chr11 126944680 126944829 -23838724 - MIR3 SINE MIR -15 193 20 344 277 188 0 chr11 126945717 126945818 -23837735 - MIR3 SINE MIR -54 154 35 199 333 29 14 chr11 126945938 126946007 -23837546 - L2 LINE L2 -3 3269 3200 270 260 135 0 chr11 126948506 126948610 -23834943 + L2 LINE L2 3136 3253 -19 1429 120 25 57 chr11 126948712 126948995 -23834558 + L1MA8 LINE L1 6015 6288 -3 382 155 0 0 chr11 126949028 126949099 -23834454 + MER116 DNA Mariner 9 79 -1 217 197 127 14 chr11 126949145 126949216 -23834337 - MIR SINE MIR -6 256 178 239 311 98 31 chr11 126949431 126949624 -23833929 + L2 LINE L2 3108 3313 0 222 211 296 0 chr11 126950063 126950134 -23833419 - MIR SINE MIR -93 169 78 2395 46 3 10 chr11 126951437 126951739 -23831814 + AluY SINE Alu 2 301 -10 850 230 43 35 chr11 127007058 127007288 -23776265 + MLT1B LTR MaLR 1 232 -158 1584 214 25 17 chr11 127007289 127007649 -23775904 + MLT1A1 LTR MaLR 3 365 0 7528 204 59 44 chr11 127007649 127009359 -23774194 + MLT1A1-int LTR MaLR 1 1735 0 502 155 24 0 chr11 127009359 127009443 -23774110 + MLT1A1 LTR MaLR 1 86 -279 1332 176 26 19 chr11 127009443 127009710 -23773843 + AluJo SINE Alu 1 269 -43 1459 220 3 3 chr11 127009710 127009992 -23773561 + MLT1A1 LTR MaLR 84 365 0 1018 197 6 0 chr11 127009992 127010154 -23773399 + MLT1B LTR MaLR 228 390 0 262 341 15 30 chr11 127010318 127010450 -23773103 + MIR SINE MIR 92 221 -41 692 247 95 5 chr11 127012581 127012771 -23770782 + MIR SINE MIR 47 253 -9 349 285 8 69 chr11 127013609 127013739 -23769814 + L2 LINE L2 3189 3310 -3 381 257 63 151 chr11 127013845 127013923 -23769630 + MIR SINE MIR 4 87 -175 2077 68 23 0 chr11 127013923 127014188 -23769365 - L1PA10 LINE L1 -18 6150 5880 381 257 63 151 chr11 127014188 127014393 -23769160 + MIR SINE MIR 87 262 0 194 186 357 0 chr11 127014536 127014606 -23768947 - L2 LINE L2 -11 3302 3208 2110 122 0 0 chr11 127014617 127014913 -23768640 + AluSg SINE Alu 1 296 -14 269 291 71 50 chr11 127015372 127015513 -23768040 - MIR SINE MIR 0 262 119 392 321 36 0 chr11 127015584 127015696 -23767857 + MER91A DNA MER1_type 14 129 -67 258 213 0 0 chr11 127015760 127015807 -23767746 + MER91A DNA MER1_type 141 187 -3 198 77 0 0 chr11 127015888 127015914 -23767639 - MIR SINE MIR -64 144 119 242 281 33 0 chr11 127016118 127016206 -23767347 - MIR SINE MIR -90 118 25 976 218 201 56 chr11 127016234 127016716 -23766837 - MLT1H1 LTR MaLR -1 554 3 227 30 0 30 chr11 127017548 127017581 -23765972 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1386 205 86 38 chr11 127019842 127020286 -23763267 + MLT1C LTR MaLR 1 465 -2 341 326 91 23 chr11 127020568 127020700 -23762853 + MIR SINE MIR 5 145 -117 209 347 95 0 chr11 127022132 127022227 -23761326 + MIR SINE MIR 45 148 -60 22 0 0 0 chr11 127022346 127022368 -23761185 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr11 127023183 127023212 -23760341 + AT_rich Low_complexity Low_complexity 1 29 0 487 349 103 51 chr11 127024338 127025100 -23758453 - L2 LINE L2 -3 3269 2459 364 318 47 47 chr11 127027033 127027225 -23756328 - MIR3 SINE MIR -13 195 4 201 152 0 0 chr11 127027250 127027283 -23756270 + (TCCA)n Simple_repeat Simple_repeat 2 34 0 434 184 131 112 chr11 127027798 127028004 -23755549 + L2 LINE L2 3088 3297 -16 686 310 52 5 chr11 127029421 127029634 -23753919 + MIR SINE MIR 20 242 -20 261 369 170 10 chr11 127030410 127030616 -23752937 + MIR SINE MIR 21 259 -3 460 250 13 59 chr11 127030645 127030797 -23752756 + MIR SINE MIR 72 216 -46 688 318 31 9 chr11 127030998 127031221 -23752332 - MIR SINE MIR -6 256 29 1188 28 28 17 chr11 127031227 127031405 -23752148 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 555 267 64 12 chr11 127031434 127031606 -23751947 - MIR SINE MIR -8 254 74 429 291 0 0 chr11 127032027 127032130 -23751423 - MIR SINE MIR -111 151 49 376 252 150 8 chr11 127032795 127032922 -23750631 + MIR3 SINE MIR 23 167 -41 274 312 32 11 chr11 127033887 127033980 -23749573 + L2 LINE L2 2978 3072 -200 686 250 113 15 chr11 127034017 127034221 -23749332 + MIR SINE MIR 7 230 -32 406 256 109 49 chr11 127036115 127036326 -23747227 + MIR SINE MIR 9 226 -36 26 0 0 0 chr11 127036386 127036412 -23747141 + AT_rich Low_complexity Low_complexity 1 26 0 238 289 34 114 chr11 127037144 127037293 -23746260 + L3b LINE CR1 1439 1575 -8 3368 25 2 2 chr11 127037343 127037737 -23745816 - L1PA4 LINE L1 0 6155 5762 668 263 136 0 chr11 127037887 127038085 -23745468 + MIR SINE MIR 5 229 -33 650 211 174 69 chr11 127038107 127038325 -23745228 + MIR SINE MIR 22 262 0 778 308 12 20 chr11 127039005 127039252 -23744301 + MIR SINE MIR 18 262 0 322 337 40 0 chr11 127039287 127039388 -23744165 - L2 LINE L2 0 3272 3168 345 233 0 14 chr11 127039474 127039547 -23744006 - L2 LINE L2 0 3313 3242 2018 213 42 0 chr11 127039630 127039788 -23743765 + MSTB LTR MaLR 1 151 -275 1678 123 82 38 chr11 127039788 127040080 -23743473 - AluSq SINE Alu -8 305 1 2018 213 42 0 chr11 127040080 127040330 -23743223 + MSTB LTR MaLR 151 426 0 835 312 74 10 chr11 127040447 127040851 -23742702 + MLT1L LTR MaLR 176 605 -10 434 298 17 44 chr11 127040869 127041050 -23742503 - MIR SINE MIR 0 262 87 255 231 19 0 chr11 127041112 127041164 -23742389 + MARNA DNA Mariner 125 177 -409 2367 39 0 7 chr11 127042180 127042465 -23741088 - AluY SINE Alu -1 310 28 296 282 77 8 chr11 127042620 127042737 -23740816 - MARNA DNA Mariner -218 368 244 2137 131 0 0 chr11 127042770 127043082 -23740471 - AluSx SINE Alu 0 312 1 180 294 29 44 chr11 127043089 127043157 -23740396 - MIR SINE MIR -65 143 77 205 333 151 11 chr11 127043252 127043345 -23740208 + MIR SINE MIR 109 214 -48 427 138 0 25 chr11 127043387 127043467 -23740086 + L1MB1 LINE L1 6090 6167 -1 637 276 67 34 chr11 127043814 127044053 -23739500 - MIR SINE MIR -10 252 6 1165 197 35 18 chr11 127044707 127045001 -23738552 + L1ME4a LINE L1 5586 5885 -236 664 341 39 29 chr11 127045010 127045321 -23738232 + L3 LINE CR1 1251 1564 -13 2049 132 3 0 chr11 127045624 127045934 -23737619 - AluSx SINE Alu -1 311 1 310 156 18 32 chr11 127046318 127047400 -23736153 + L1MD2 LINE L1 6227 7752 -19 2180 120 0 0 chr11 127047400 127047699 -23735854 - AluSx SINE Alu -13 299 1 310 156 18 32 chr11 127047699 127047719 -23735834 + L1MD2 LINE L1 7752 7771 0 459 305 0 0 chr11 127049514 127049642 -23733911 - MIR3 SINE MIR -41 167 40 756 281 88 0 chr11 127049805 127050033 -23733520 - MIR SINE MIR -3 259 12 183 267 0 0 chr11 127050045 127050090 -23733463 + L2 LINE L2 3264 3308 -5 306 351 32 0 chr11 127050472 127050566 -23732987 + L2 LINE L2 3149 3245 -27 2062 165 19 58 chr11 127050661 127051074 -23732479 - MLT2C1 LTR ERVL 0 397 1 218 321 92 30 chr11 127051334 127051465 -23732088 - MER5A DNA MER1_type -14 175 37 488 277 72 53 chr11 127051546 127051768 -23731785 + MIR SINE MIR 31 254 -8 365 300 112 29 chr11 127052253 127052423 -23731130 + MIR SINE MIR 7 190 -72 1700 96 4 0 chr11 127052655 127052884 -23730669 + AluY SINE Alu 1 230 -81 880 101 8 0 chr11 127052884 127053013 -23730540 + AluY SINE Alu 171 300 -11 322 225 27 4 chr11 127053055 127053140 -23730413 + MIR SINE MIR 60 143 -65 948 207 5 11 chr11 127053403 127053591 -23729962 - MSTD LTR MaLR 0 396 210 534 175 38 49 chr11 127053703 127053886 -23729667 - MSTD LTR MaLR -187 187 1 182 203 136 17 chr11 127054011 127054070 -23729483 - L2 LINE L2 -1888 1426 1361 416 296 138 5 chr11 127054476 127054665 -23728888 - MIR SINE MIR 0 262 49 301 333 115 6 chr11 127055677 127055833 -23727720 - MIR SINE MIR -72 190 18 229 200 0 0 chr11 127056471 127056511 -23727042 + MER45C DNA AcHobo 1 40 -913 268 198 99 12 chr11 127056520 127056601 -23726952 + MER45C DNA AcHobo 188 275 -678 405 0 0 0 chr11 127056723 127056768 -23726785 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 457 160 0 0 chr11 127056783 127056858 -23726695 + MER45C DNA AcHobo 879 953 0 422 289 59 14 chr11 127057319 127057465 -23726088 - MIR SINE MIR -62 146 36 286 292 15 73 chr11 127057761 127057898 -23725655 - L2 LINE L2 0 3272 3144 530 226 86 50 chr11 127057900 127058121 -23725432 + MER112 DNA MER1_type 3 231 -29 298 212 0 129 chr11 127058205 127058290 -23725263 - L2 LINE L2 -205 3067 2994 274 307 10 20 chr11 127058261 127058362 -23725191 - L2 LINE L2 -469 2845 2746 * 469 321 12 6 chr11 127058416 127058578 -23724975 + MLT1I LTR MaLR 57 219 -190 461 317 19 12 chr11 127058699 127058860 -23724693 - L2 LINE L2 -289 3024 2863 1953 149 41 23 chr11 127060094 127060436 -23723117 - MER7A DNA MER2_type 0 346 1 282 206 0 0 chr11 127060436 127060504 -23723049 + (TATG)n Simple_repeat Simple_repeat 1 68 0 205 264 293 9 chr11 127060619 127060725 -23722828 - L2 LINE L2 -214 3058 2923 384 230 66 66 chr11 127060976 127061128 -23722425 - MIR SINE MIR 0 262 111 869 254 10 10 chr11 127061209 127061406 -23722147 - MIR SINE MIR -3 259 63 351 0 0 0 chr11 127062619 127062658 -23720895 + (CA)n Simple_repeat Simple_repeat 2 40 0 202 304 0 0 chr11 127062749 127062805 -23720748 - L2 LINE L2 0 3313 3258 264 373 52 5 chr11 127063117 127063310 -23720243 + L2 LINE L2 2554 2755 -559 771 265 47 17 chr11 127063336 127063570 -23719983 + MIR SINE MIR 1 241 -21 231 143 0 0 chr11 127063707 127063742 -23719811 + L2 LINE L2 3266 3300 -13 192 77 0 0 chr11 127063742 127063768 -23719785 + (TGGA)n Simple_repeat Simple_repeat 1 26 0 281 263 63 32 chr11 127064496 127064591 -23718962 + MIR3 SINE MIR 107 204 -4 470 243 71 76 chr11 127066400 127066610 -23716943 - MIR SINE MIR -26 236 28 1901 166 62 0 chr11 127066632 127066988 -23716565 + L1MB4 LINE L1 5776 6153 -27 442 152 141 0 chr11 127067830 127067929 -23715624 - MER53 DNA DNA -73 116 4 671 92 0 0 chr11 127068063 127068161 -23715392 - L1PA12 LINE L1 -1 6167 6070 345 24 0 0 chr11 127068427 127068469 -23715084 + (TG)n Simple_repeat Simple_repeat 1 42 0 * 543 16 0 0 chr11 127068468 127068532 -23715021 + (GA)n Simple_repeat Simple_repeat 1 64 0 23 0 0 0 chr11 127068765 127068788 -23714765 + AT_rich Low_complexity Low_complexity 1 23 0 405 58 0 0 chr11 127069415 127069467 -23714086 + (CA)n Simple_repeat Simple_repeat 2 53 0 1660 204 156 17 chr11 127070647 127071050 -23712503 - MER31B LTR ERV1 -7 459 1 183 294 112 94 chr11 127071358 127071528 -23712025 + MIR SINE MIR 50 222 -40 1974 188 17 0 chr11 127071806 127072152 -23711401 + MLT1A1 LTR MaLR 3 354 -11 448 286 22 112 chr11 127072437 127072706 -23710847 - L2 LINE L2 -1 3271 3027 470 291 54 31 chr11 127072993 127073216 -23710337 + MIR SINE MIR 21 248 -14 233 265 0 0 chr11 127073266 127073315 -23710238 + L2 LINE L2 3251 3299 -14 616 304 80 22 chr11 127073725 127073949 -23709604 - MIR SINE MIR -6 256 20 186 231 0 0 chr11 127074467 127074506 -23709047 + L2 LINE L2 3031 3069 -244 853 269 29 25 chr11 127074520 127074765 -23708788 - MIR SINE MIR -14 248 3 201 133 0 0 chr11 127074942 127074972 -23708581 + (CCCTG)n Simple_repeat Simple_repeat 2 31 0 336 323 15 15 chr11 127075069 127075199 -23708354 + MIR SINE MIR 83 212 -50 279 247 62 101 chr11 127075672 127075850 -23707703 - L2 LINE L2 0 3272 3102 751 222 61 11 chr11 127076205 127076385 -23707168 + MER5A DNA MER1_type 1 189 0 578 259 65 60 chr11 127076564 127076900 -23706653 - L1ME LINE L1 -313 5808 5471 448 296 0 58 chr11 127076903 127077075 -23706478 - L2 LINE L2 -609 2705 2544 2137 129 49 6 chr11 127077436 127077785 -23705768 - THE1B LTR MaLR 0 364 1 373 320 0 24 chr11 127078278 127078403 -23705150 - MIR SINE MIR -109 153 32 2005 128 3 0 chr11 127078568 127078866 -23704687 - AluSx SINE Alu -13 299 1 1035 226 33 0 chr11 127079127 127079339 -23704214 - MIR SINE MIR 0 262 44 281 305 53 40 chr11 127079878 127080029 -23703524 + MIR3 SINE MIR 35 187 -21 390 318 16 8 chr11 127080037 127080166 -23703387 + MIR SINE MIR 20 149 -113 502 289 108 0 chr11 127081380 127081546 -23702007 - MIR3 SINE MIR -3 205 22 300 196 89 54 chr11 127081946 127082058 -23701495 + MLT1H LTR MaLR 434 549 0 1054 255 113 31 chr11 127082289 127082705 -23700848 - MLT1J2 LTR MaLR 0 450 1 352 342 78 24 chr11 127083097 127083430 -23700123 - L2 LINE L2 -528 2786 2436 2072 198 22 16 chr11 127084487 127084896 -23698657 + MLT2B1 LTR ERVL 1 406 -47 746 69 21 69 chr11 127084931 127085120 -23698433 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 319 87 22 0 chr11 127085136 127085182 -23698371 + MLT2B1 LTR ERVL 472 518 -2 1760 125 7 24 chr11 127085217 127085506 -23698047 + AluSx SINE Alu 1 284 -28 348 24 0 0 chr11 127085506 127085547 -23698006 + (CA)n Simple_repeat Simple_repeat 2 42 0 225 345 50 43 chr11 127085640 127085779 -23697774 - L2 LINE L2 -5 3308 3169 180 294 64 73 chr11 127085851 127085960 -23697593 - L2 LINE L2 -189 3083 2976 341 74 0 37 chr11 127086250 127086304 -23697249 - LTR67 LTR ERVL -27 530 479 2263 86 3 3 chr11 127086305 127086606 -23696947 + AluSp SINE Alu 1 301 -12 927 226 51 105 chr11 127088416 127088827 -23694726 - MLT1D LTR MaLR 0 505 117 393 281 25 8 chr11 127088853 127088974 -23694579 - MLT1D LTR MaLR -370 135 13 879 217 82 5 chr11 127089809 127090016 -23693537 + MER58A DNA MER1_type 2 224 0 508 259 117 25 chr11 127090076 127090315 -23693238 - MIR SINE MIR 0 262 2 243 308 92 17 chr11 127091455 127091575 -23691978 + L2 LINE L2 3139 3267 -5 290 290 26 58 chr11 127091625 127091780 -23691773 - MER117 DNA MER1_type -44 153 4 214 288 0 0 chr11 127092006 127092065 -23691488 - L3b LINE CR1 -190 1393 1335 211 294 0 44 chr11 127093199 127093267 -23690286 - MIR SINE MIR -48 214 150 27 0 0 0 chr11 127093388 127093415 -23690138 + AT_rich Low_complexity Low_complexity 1 27 0 1409 189 4 21 chr11 127093424 127093704 -23689849 - AluJo SINE Alu -20 292 18 205 271 94 12 chr11 127093728 127093813 -23689740 - MIR SINE MIR -67 195 104 257 214 71 36 chr11 127094476 127094560 -23688993 - L2 LINE L2 -49 3223 3137 282 313 18 25 chr11 127097713 127097876 -23685677 + GA-rich Low_complexity Low_complexity 2 163 0 * 293 381 0 20 chr11 127097808 127097955 -23685598 + G-rich Low_complexity Low_complexity 6 149 0 337 244 12 37 chr11 127098000 127098082 -23685471 - AluJb SINE Alu -106 196 117 194 289 77 0 chr11 127098982 127099034 -23684519 - L2 LINE L2 -2 3311 3256 232 266 11 75 chr11 127100391 127100579 -23682974 + GA-rich Low_complexity Low_complexity 5 180 0 536 275 66 28 chr11 127103634 127103816 -23679737 + MIR SINE MIR 48 236 -26 332 278 68 23 chr11 127105663 127105839 -23677714 + MIR SINE MIR 76 259 -3 384 230 66 66 chr11 127105920 127106072 -23677481 + MIR SINE MIR 111 262 0 205 264 293 9 chr11 127106323 127106429 -23677124 + L2 LINE L2 2923 3058 -214 282 206 0 0 chr11 127106544 127106612 -23676941 + (CATA)n Simple_repeat Simple_repeat 1 68 0 1953 149 41 23 chr11 127106612 127106954 -23676599 + MER7A DNA MER2_type 1 346 0 910 183 159 10 chr11 127108100 127108395 -23675158 + L1MB4 LINE L1 5798 6136 -44 442 152 141 0 chr11 127109255 127109354 -23674199 - MER53 DNA DNA -73 116 4 671 92 0 0 chr11 127109488 127109586 -23673967 - L1PA12 LINE L1 -1 6167 6070 408 20 0 0 chr11 127109853 127109902 -23673651 + (TG)n Simple_repeat Simple_repeat 1 49 0 * 510 31 0 0 chr11 127109901 127109965 -23673588 + (GA)n Simple_repeat Simple_repeat 1 64 0 369 0 0 0 chr11 127111375 127111416 -23672137 + (CA)n Simple_repeat Simple_repeat 2 42 0 202 304 0 0 chr11 127111507 127111563 -23671990 - L2 LINE L2 0 3313 3258 255 343 73 17 chr11 127111875 127112053 -23671500 + L2 LINE L2 2554 2741 -573 195 308 128 0 chr11 127112090 127112207 -23671346 + MIR SINE MIR 1 132 -130 465 287 149 11 chr11 127113026 127113207 -23670346 + MIR SINE MIR 47 252 -10 2071 92 0 14 chr11 127113380 127113703 -23669850 + AluSc SINE Alu 1 319 0 718 226 61 17 chr11 127117089 127117270 -23666283 - MER5A DNA MER1_type 0 189 1 266 318 12 0 chr11 127117812 127117897 -23665656 - L2 LINE L2 -34 3279 3194 224 272 114 9 chr11 127118401 127118515 -23665038 - MIR SINE MIR -59 203 78 525 269 95 60 chr11 127120026 127120309 -23663244 + MLT1K LTR MaLR 286 578 -10 1914 184 29 18 chr11 127120739 127121125 -23662428 + MLT1B LTR MaLR 1 390 0 866 197 17 11 chr11 127121165 127121343 -23662210 + AluJo SINE Alu 18 196 -116 226 277 38 25 chr11 127121343 127121502 -23662051 + (TGGG)n Simple_repeat Simple_repeat 2 162 0 1959 124 3 7 chr11 127123174 127123472 -23660081 - AluSq SINE Alu -12 301 5 231 208 13 104 chr11 127125449 127125526 -23658027 + L2 LINE L2 2993 3062 -210 387 282 99 35 chr11 127125639 127125841 -23657712 + MIR SINE MIR 48 262 0 246 321 57 19 chr11 127125851 127125957 -23657596 + L2 LINE L2 3158 3267 -5 408 20 0 0 chr11 127126274 127126323 -23657230 + (CA)n Simple_repeat Simple_repeat 2 50 0 338 330 114 31 chr11 127126418 127126742 -23656811 - L2 LINE L2 -349 2965 2615 262 278 52 26 chr11 127128379 127128494 -23655059 - MIR SINE MIR -67 141 24 403 294 96 22 chr11 127129543 127129679 -23653874 - L2 LINE L2 -6 3266 3121 380 165 0 55 chr11 127130018 127130145 -23653408 + CT-rich Low_complexity Low_complexity 2 121 0 628 236 39 22 chr11 127132935 127133113 -23650440 - MIR SINE MIR -12 250 70 399 294 112 51 chr11 127137928 127138142 -23645411 - MIR SINE MIR -21 241 15 26 30 0 0 chr11 127140315 127140348 -23643205 + AT_rich Low_complexity Low_complexity 1 33 0 314 287 160 27 chr11 127142791 127142979 -23640574 + MIR SINE MIR 50 262 0 182 203 136 17 chr11 127143385 127143444 -23640109 + L2 LINE L2 1361 1426 -1888 534 175 38 49 chr11 127143569 127143752 -23639801 + MSTD LTR MaLR 1 187 -187 948 207 5 11 chr11 127143864 127144052 -23639501 + MSTD LTR MaLR 210 396 0 1165 260 129 42 chr11 127145857 127146314 -23637239 - MLT1D LTR MaLR 0 505 9 299 221 33 41 chr11 127147834 127147956 -23635597 + MER113 DNA MER1_type? 1 121 -400 300 309 12 0 chr11 127148493 127148574 -23634979 - MER5A DNA MER1_type -101 88 7 277 203 27 14 chr11 127148730 127148804 -23634749 + MIR3 SINE MIR 133 207 -1 365 266 119 0 chr11 127149235 127149344 -23634209 - MIR SINE MIR -120 142 21 451 131 0 48 chr11 127149566 127149650 -23633903 - MADE1 DNA Mariner 0 80 1 463 312 35 65 chr11 127149778 127149977 -23633576 - MER91A DNA MER1_type -3 193 1 418 226 24 18 chr11 127150857 127151025 -23632528 + CT-rich Low_complexity Low_complexity 3 171 0 228 144 56 33 chr11 127151050 127151140 -23632413 + CT-rich Low_complexity Low_complexity 1 92 0 491 169 28 34 chr11 127151152 127151330 -23632223 + CT-rich Low_complexity Low_complexity 1 177 0 523 142 36 36 chr11 127151353 127151612 -23631941 + CT-rich Low_complexity Low_complexity 1 259 0 315 0 0 0 chr11 127154502 127154537 -23629016 + (T)n Simple_repeat Simple_repeat 1 35 0 234 91 0 0 chr11 127154930 127154963 -23628590 + (GA)n Simple_repeat Simple_repeat 2 34 0 401 287 29 23 chr11 127156430 127156695 -23626858 + GA-rich Low_complexity Low_complexity 1 266 0 972 171 25 20 chr11 127156823 127157022 -23626531 + THE1B LTR MaLR 165 364 0 448 296 0 58 chr11 127157383 127157555 -23625998 + L2 LINE L2 2544 2705 -609 584 256 62 57 chr11 127157558 127157894 -23625659 + L1ME LINE L1 5471 5808 -313 749 222 61 11 chr11 127158073 127158253 -23625300 - MER5A DNA MER1_type 0 189 1 279 247 62 101 chr11 127158606 127158784 -23624769 + L2 LINE L2 3102 3272 0 334 308 31 31 chr11 127159258 127159388 -23624165 - MIR SINE MIR -50 212 83 201 133 0 0 chr11 127159485 127159515 -23624038 + (CAGGG)n Simple_repeat Simple_repeat 2 31 0 830 274 29 25 chr11 127159692 127159937 -23623616 + MIR SINE MIR 3 248 -14 186 231 0 0 chr11 127159951 127159990 -23623563 - L2 LINE L2 -244 3069 3031 22 0 0 0 chr11 127161160 127161182 -23622371 + AT_rich Low_complexity Low_complexity 1 22 0 369 62 0 0 chr11 127161807 127161855 -23621698 + (CA)n Simple_repeat Simple_repeat 2 49 0 21 0 0 0 chr11 127165341 127165362 -23618191 + GC_rich Low_complexity Low_complexity 1 21 0 1660 204 156 17 chr11 127166333 127166736 -23616817 - MER31B LTR ERV1 -7 459 1 192 288 112 94 chr11 127167045 127167215 -23616338 + MIR SINE MIR 50 222 -40 1927 188 20 0 chr11 127167493 127167838 -23615715 + MLT1A1 LTR MaLR 3 354 -11 448 286 22 112 chr11 127168124 127168393 -23615160 - L2 LINE L2 -1 3271 3027 470 291 54 31 chr11 127168680 127168903 -23614650 + MIR SINE MIR 21 248 -14 233 265 0 0 chr11 127168953 127169002 -23614551 + L2 LINE L2 3251 3299 -14 562 275 99 52 chr11 127169412 127169645 -23613908 - MIR SINE MIR -6 256 13 202 282 18 49 chr11 127169997 127170160 -23613393 + CT-rich Low_complexity Low_complexity 2 159 0 855 232 54 105 chr11 127170634 127171044 -23612509 - MLT1D LTR MaLR 0 505 117 393 281 25 8 chr11 127171070 127171191 -23612362 - MLT1D LTR MaLR -370 135 13 904 213 82 5 chr11 127172025 127172232 -23611321 + MER58A DNA MER1_type 2 224 0 621 280 113 21 chr11 127172292 127172531 -23611022 - MIR SINE MIR 0 262 2 243 308 92 17 chr11 127173671 127173791 -23609762 + L2 LINE L2 3139 3267 -5 253 284 26 58 chr11 127173842 127173997 -23609556 - MER117 DNA MER1_type -44 153 4 214 288 0 0 chr11 127174223 127174282 -23609271 - L3b LINE CR1 -190 1393 1335 188 309 0 44 chr11 127175418 127175486 -23608067 - MIR SINE MIR -48 214 150 27 0 0 0 chr11 127175607 127175634 -23607919 + AT_rich Low_complexity Low_complexity 1 27 0 1270 201 11 25 chr11 127175643 127175922 -23607631 - AluJo SINE Alu -20 292 18 234 235 82 31 chr11 127177425 127177523 -23606030 - L2 LINE L2 -49 3223 3121 217 306 25 0 chr11 127177631 127177723 -23605830 - MIR SINE MIR -65 143 61 211 219 12 12 chr11 127178740 127178822 -23604731 + CT-rich Low_complexity Low_complexity 1 82 0 313 336 15 15 chr11 127180047 127180200 -23603353 + GA-rich Low_complexity Low_complexity 1 259 0 195 238 29 23 chr11 127180223 127180395 -23603158 + GA-rich Low_complexity Low_complexity 2 174 0 396 303 120 26 chr11 127180821 127181055 -23602498 + L3b LINE CR1 1208 1463 -120 972 76 0 38 chr11 127181432 127181563 -23601990 - AluSg/x SINE Alu -1 311 186 467 316 13 0 chr11 127182245 127182400 -23601153 + MIR SINE MIR 106 262 0 268 260 13 13 chr11 127182638 127182715 -23600838 - MER81 DNA DNA -37 77 1 255 227 0 0 chr11 127182801 127182867 -23600686 + CT-rich Low_complexity Low_complexity 4 69 0 1511 214 50 22 chr11 127183056 127183420 -23600133 - MLT1A2 LTR MaLR 0 374 1 272 241 63 146 chr11 127185420 127185578 -23597975 + L2 LINE L2 3164 3308 -5 266 202 0 95 chr11 127185587 127185671 -23597882 - MIR SINE MIR -98 164 89 710 231 99 74 chr11 127186885 127186950 -23596603 + MIR SINE MIR 14 76 -186 2371 67 3 0 chr11 127186950 127187233 -23596320 - AluY SINE Alu -14 297 14 710 231 99 74 chr11 127187233 127187410 -23596143 + MIR SINE MIR 76 262 0 234 299 118 16 chr11 127187537 127187664 -23595889 - MIR SINE MIR -12 250 111 290 293 126 38 chr11 127187664 127187985 -23595568 + L2 LINE L2 2696 3053 -219 257 265 126 108 chr11 127188154 127188377 -23595176 - MLT1I LTR MaLR 0 409 183 319 253 13 0 chr11 127188503 127188582 -23594971 + L2 LINE L2 3232 3311 -2 229 347 6 24 chr11 127188804 127188971 -23594582 + CT-rich Low_complexity Low_complexity 6 169 0 230 261 23 23 chr11 127189135 127189265 -23594288 + CT-rich Low_complexity Low_complexity 2 131 0 301 261 22 33 chr11 127189605 127189785 -23593768 + GA-rich Low_complexity Low_complexity 1 178 0 226 353 44 7 chr11 127190307 127190443 -23593110 - MIR SINE MIR -115 147 7 225 0 0 0 chr11 127190946 127190971 -23592582 + (T)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr11 127192951 127192975 -23590578 + AT_rich Low_complexity Low_complexity 1 24 0 21 81 0 0 chr11 127200026 127200063 -23583490 + GC_rich Low_complexity Low_complexity 1 37 0 192 40 0 0 chr11 127201650 127201675 -23581878 + (CA)n Simple_repeat Simple_repeat 2 26 0 370 259 14 28 chr11 127205158 127205440 -23578113 + CT-rich Low_complexity Low_complexity 1 278 0 272 203 36 29 chr11 127205457 127205595 -23577958 + CT-rich Low_complexity Low_complexity 2 140 0 534 139 44 19 chr11 127205618 127205776 -23577777 + CT-rich Low_complexity Low_complexity 4 165 0 208 169 0 60 chr11 127205795 127205878 -23577675 + CT-rich Low_complexity Low_complexity 4 81 0 244 252 262 0 chr11 127207532 127207635 -23575918 - L2 LINE L2 0 3313 3184 185 309 36 0 chr11 127215845 127215900 -23567653 + MIR SINE MIR 90 146 -116 326 235 59 0 chr11 127216195 127216280 -23567273 + L2 LINE L2 3182 3271 -1 1959 133 3 41 chr11 127216676 127216992 -23566561 - AluSx SINE Alu -8 304 1 531 297 54 14 chr11 127218524 127218746 -23564807 + MIR SINE MIR 28 258 -4 224 176 0 59 chr11 127219793 127219844 -23563709 + L2 LINE L2 3265 3312 -1 187 324 15 0 chr11 127224439 127224507 -23559046 - MIR SINE MIR -62 146 78 186 43 0 0 chr11 127228795 127228818 -23554735 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 277 172 0 94 chr11 127228834 127228898 -23554655 + L2 LINE L2 3256 3313 0 261 0 0 0 chr11 127229804 127229833 -23553720 + (GA)n Simple_repeat Simple_repeat 2 30 0 290 216 29 29 chr11 127232087 127232189 -23551364 - MER113 DNA MER1_type? -419 102 1 1030 242 71 69 chr11 127233702 127234165 -23549388 + MLT1C LTR MaLR 4 467 0 417 287 44 0 chr11 127236125 127236261 -23547292 - MIR SINE MIR -5 257 116 2201 106 3 0 chr11 127237541 127237870 -23545683 + AluSp SINE Alu 1 330 0 198 167 0 0 chr11 127238477 127238513 -23545040 + (ATGGTG)n Simple_repeat Simple_repeat 4 39 0 2250 104 0 0 chr11 127240458 127240755 -23542798 + AluSx SINE Alu 12 308 -4 200 345 72 22 chr11 127240771 127240910 -23542643 + L3b LINE CR1 1190 1335 -248 219 114 0 0 chr11 127244659 127244694 -23538859 + (TG)n Simple_repeat Simple_repeat 1 35 0 204 125 0 0 chr11 127244695 127244727 -23538826 + (TA)n Simple_repeat Simple_repeat 2 33 0 598 242 39 22 chr11 127247315 127247493 -23536060 + MIR SINE MIR 70 250 -12 384 265 120 55 chr11 127250314 127250514 -23533039 - MIR SINE MIR -35 227 15 26 30 0 0 chr11 127252687 127252720 -23530833 + AT_rich Low_complexity Low_complexity 1 33 0 2285 78 3 0 chr11 127255750 127256032 -23527521 - AluY SINE Alu -24 287 5 454 297 114 57 chr11 127256497 127256743 -23526810 - MIR SINE MIR 0 262 3 194 299 58 11 chr11 127258028 127258115 -23525438 + MIR SINE MIR 123 213 -49 1349 157 13 18 chr11 127258817 127259046 -23524507 + MER30 DNA MER1_type 1 228 -2 237 234 0 78 chr11 127259552 127259629 -23523924 + L2 LINE L2 2992 3062 -210 462 245 82 14 chr11 127259742 127259889 -23523664 + MIR SINE MIR 48 204 -58 310 302 57 19 chr11 127259956 127260062 -23523491 + L2 LINE L2 3158 3267 -5 444 19 0 0 chr11 127260379 127260432 -23523121 + (CA)n Simple_repeat Simple_repeat 2 54 0 336 335 109 41 chr11 127260511 127260851 -23522702 - L2 LINE L2 -337 2977 2615 401 274 206 0 chr11 127261208 127261354 -23522199 + MER5A DNA MER1_type 14 189 0 25 51 0 0 chr11 127262989 127263028 -23520525 + AT_rich Low_complexity Low_complexity 1 39 0 726 217 78 12 chr11 127263653 127263819 -23519734 - MER5A DNA MER1_type -6 183 7 233 257 139 20 chr11 127263808 127263909 -23519644 - MIR SINE MIR -44 218 106 * 259 224 17 0 chr11 127263905 127263963 -23519590 + MIR SINE MIR 63 121 -141 2094 140 0 0 chr11 127264831 127265123 -23518430 - AluSx SINE Alu -20 292 1 2144 141 0 0 chr11 127265128 127265434 -23518119 - AluSx SINE Alu -6 306 1 1875 132 20 26 chr11 127265754 127266058 -23517495 - AluJo SINE Alu -10 302 1 2418 74 0 7 chr11 127266489 127266798 -23516755 - AluY SINE Alu 0 311 5 2292 74 7 3 chr11 127267613 127267898 -23515655 - AluSg SINE Alu -15 295 10 240 200 0 0 chr11 127268516 127268571 -23514982 + (TGAA)n Simple_repeat Simple_repeat 1 55 0 694 204 0 19 chr11 127268637 127268799 -23514754 - L1MD3 LINE L1 -8 7987 7829 1542 172 38 187 chr11 127268800 127269061 -23514492 - L1MC4a LINE L1 -312 7496 7198 425 220 0 68 chr11 127269061 127269193 -23514360 - MLT1F1 LTR MaLR -442 125 3 1542 172 38 187 chr11 127269193 127269534 -23514019 - L1MC4a LINE L1 -610 7198 6872 455 309 134 14 chr11 127270427 127270644 -23512909 + MIR SINE MIR 19 261 -1 286 294 12 0 chr11 127271104 127271189 -23512364 + L2 LINE L2 3194 3279 -34 674 242 55 16 chr11 127271731 127271913 -23511640 + MER5A DNA MER1_type 1 189 0 195 42 0 0 chr11 127273503 127273527 -23510026 + (T)n Simple_repeat Simple_repeat 1 24 0 2267 71 0 0 chr11 127277092 127277412 -23506141 - AluY SINE Alu 0 320 1 1620 30 0 15 chr11 127278546 127278746 -23504807 + L1PA2 LINE L1 5959 6155 0 209 318 65 19 chr11 127281020 127281174 -23502379 + L2 LINE L2 2897 3057 -215 310 225 117 33 chr11 127283996 127284116 -23499437 + MIR SINE MIR 133 262 0 200 325 121 35 chr11 127284490 127284804 -23498749 - L2 LINE L2 -608 2706 2366 21 36 0 0 chr11 127285568 127285596 -23497957 + AT_rich Low_complexity Low_complexity 1 28 0 550 269 66 28 chr11 127287963 127288145 -23495408 - MIR SINE MIR -26 236 48 212 387 7 47 chr11 127289346 127289496 -23494057 - L2 LINE L2 -10 3303 3160 220 284 45 0 chr11 127289681 127289748 -23493805 + L2 LINE L2 3145 3214 -58 252 0 0 0 chr11 127289916 127289944 -23493609 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 375 23 0 0 chr11 127289943 127289987 -23493566 + (TG)n Simple_repeat Simple_repeat 1 44 0 804 240 40 5 chr11 127291140 127291340 -23492213 - MIR SINE MIR -1 261 55 216 248 212 7 chr11 127291426 127291563 -23491990 - MIR SINE MIR -17 245 81 226 226 191 12 chr11 127291739 127291823 -23491730 + MIR SINE MIR 99 197 -65 35 41 0 0 chr11 127291953 127292002 -23491551 + AT_rich Low_complexity Low_complexity 1 49 0 1076 249 67 67 chr11 127293618 127294080 -23489473 - L2 LINE L2 -4 3309 2848 2335 102 0 0 chr11 127294912 127295215 -23488338 + AluSx SINE Alu 2 304 -8 719 164 49 60 chr11 127295288 127295412 -23488141 + MER3 DNA MER1_type 4 127 -82 2608 61 0 0 chr11 127295412 127295723 -23487830 - AluY SINE Alu 0 311 1 719 164 49 60 chr11 127295723 127295781 -23487772 + MER3 DNA MER1_type 127 184 -25 243 294 87 54 chr11 127298466 127298650 -23484903 - MIR SINE MIR -65 197 8 2357 60 0 7 chr11 127298978 127299277 -23484276 + AluY SINE Alu 1 297 -14 21 0 0 0 chr11 127299523 127299544 -23484009 + AT_rich Low_complexity Low_complexity 1 21 0 2238 94 3 13 chr11 127300582 127300891 -23482662 + AluSq SINE Alu 1 306 -7 547 81 23 0 chr11 127301335 127301421 -23482132 + (TA)n Simple_repeat Simple_repeat 1 88 0 1881 154 19 26 chr11 127301768 127302079 -23481474 - AluJo SINE Alu -3 309 1 2485 161 3 9 chr11 127302136 127302587 -23480966 + MSTB2 LTR MaLR 1 457 0 261 319 51 9 chr11 127303965 127304079 -23479474 + MIR SINE MIR 44 160 -69 397 286 39 100 chr11 127307458 127307689 -23475864 + MIR SINE MIR 3 219 -43 1340 107 0 0 chr11 127307934 127308131 -23475422 + L1PA13 LINE L1 5947 6143 -20 302 272 22 0 chr11 127308150 127308242 -23475311 + MER69 DNA AcHobo 706 799 -1727 643 188 69 6 chr11 127308296 127308456 -23475097 + MER69 DNA AcHobo 2266 2435 -91 357 39 0 0 chr11 127311697 127311749 -23471804 + AluY SINE Alu 250 301 0 294 29 0 0 chr11 127311901 127311936 -23471617 + (CA)n Simple_repeat Simple_repeat 1 35 0 2288 127 15 0 chr11 127311937 127312277 -23471276 + MER7A DNA MER2_type 3 345 -1 21 36 0 0 chr11 127313266 127313294 -23470259 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr11 127313337 127313364 -23470189 + AT_rich Low_complexity Low_complexity 1 27 0 228 317 0 0 chr11 127313575 127313635 -23469918 - MARNA DNA Mariner -89 497 438 315 0 0 0 chr11 127313970 127314005 -23469548 + (TG)n Simple_repeat Simple_repeat 2 36 0 471 172 0 39 chr11 127314540 127314668 -23468885 + CT-rich Low_complexity Low_complexity 3 125 0 187 81 81 0 chr11 127314677 127314714 -23468839 - L2 LINE L2 0 3313 3274 517 277 44 25 chr11 127315500 127315659 -23467894 + MIR SINE MIR 25 186 -76 244 292 142 35 chr11 127315656 127315769 -23467784 - L2 LINE L2 -21 3251 3127 * 22 35 0 0 chr11 127317052 127317081 -23466472 + AT_rich Low_complexity Low_complexity 1 29 0 521 242 17 45 chr11 127317134 127317199 -23466354 - MIR SINE MIR -4 258 193 1184 214 4 17 chr11 127317199 127317437 -23466116 + MER8 DNA MER2_type 2 236 -3 521 242 17 45 chr11 127317437 127317549 -23466004 - MIR SINE MIR -69 193 86 262 267 78 43 chr11 127317863 127317979 -23465574 - L2 LINE L2 -76 3196 3077 356 260 97 80 chr11 127319413 127319775 -23463778 + MLT1J1 LTR MaLR 7 374 -76 189 426 0 0 chr11 127320441 127320502 -23463051 - L2 LINE L2 -44 3228 3168 311 0 0 25 chr11 127323804 127323844 -23459709 + (CA)n Simple_repeat Simple_repeat 2 40 0 202 335 92 55 chr11 127324470 127324634 -23458919 - L2 LINE L2 -706 2608 2439 588 233 51 40 chr11 127324743 127324919 -23458634 - MIR SINE MIR 0 262 85 398 228 106 8 chr11 127324919 127325042 -23458511 + MLT1J LTR MaLR 1 135 -376 383 286 71 66 chr11 127325104 127325286 -23458267 + MLT1J LTR MaLR 235 417 -94 239 292 56 42 chr11 127325430 127325502 -23458051 - MIR SINE MIR -173 89 17 1785 126 25 22 chr11 127325902 127326180 -23457373 - AluJo SINE Alu -23 289 11 250 305 12 37 chr11 127328069 127328151 -23455402 - L2 LINE L2 0 3313 3234 3788 167 24 45 chr11 127328221 127329073 -23454480 - L1MB7 LINE L1 -8 6176 5343 241 236 0 83 chr11 127332820 127332892 -23450661 - MIR SINE MIR 0 262 197 265 309 25 5 chr11 127333043 127333159 -23450394 - MIR SINE MIR -91 117 1 531 251 237 14 chr11 127333475 127333682 -23449871 + MIR SINE MIR 2 254 -8 228 182 0 0 chr11 127334283 127334327 -23449226 - L2 LINE L2 -1 3312 3269 245 224 59 0 chr11 127334468 127334553 -23449000 + L1MC4 LINE L1 6614 6703 -1339 30 45 0 0 chr11 127334830 127334874 -23448679 + AT_rich Low_complexity Low_complexity 1 44 0 4016 157 93 7 chr11 127335247 127336007 -23447546 - LTR1B LTR ERV1 0 826 1 304 276 16 110 chr11 127336399 127336526 -23447027 - L2 LINE L2 -24 3289 3175 22 0 0 0 chr11 127337270 127337292 -23446261 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 127337426 127337447 -23446106 + AT_rich Low_complexity Low_complexity 1 21 0 204 382 33 28 chr11 127338103 127338315 -23445238 - L2 LINE L2 -2428 886 674 278 319 102 37 chr11 127338901 127339117 -23444436 + L2 LINE L2 2526 2755 -559 1689 151 45 42 chr11 127340201 127340538 -23443015 + MER44D DNA MER2_type 1 608 -1 3936 151 58 16 chr11 127340989 127341829 -23441724 - Charlie1a DNA MER1_type -2 1453 511 1762 187 115 10 chr11 127341833 127342224 -23441329 - Charlie1a DNA MER1_type -1017 438 7 521 268 42 67 chr11 127342722 127342961 -23440592 - MIR SINE MIR -2 260 28 204 125 0 0 chr11 127343930 127343962 -23439591 + (GGA)n Simple_repeat Simple_repeat 3 34 0 828 280 5 19 chr11 127343980 127344191 -23439362 - MIR SINE MIR -1 261 54 183 100 0 0 chr11 127344688 127344718 -23438835 + (T)n Simple_repeat Simple_repeat 1 30 0 2768 10 0 0 chr11 127344722 127345036 -23438517 - L1HS LINE L1 0 6155 5842 2363 8 0 0 chr11 127345036 127345300 -23438253 + L1HS LINE L1 5572 5835 -320 297 0 0 0 chr11 127346454 127346487 -23437066 + (TA)n Simple_repeat Simple_repeat 1 33 0 2063 108 27 7 chr11 127346487 127346782 -23436771 - AluSx SINE Alu -11 301 1 342 300 0 0 chr11 127348772 127348862 -23434691 + L1ME LINE L1 5625 5714 -407 491 343 136 5 chr11 127348895 127349108 -23434445 - MIR SINE MIR -3 259 19 * 921 271 24 0 chr11 127349107 127349317 -23434236 - MIR SINE MIR -11 251 37 355 296 48 24 chr11 127349576 127349701 -23433852 + MIR SINE MIR 18 145 -63 351 256 6 106 chr11 127350337 127350497 -23433056 - MER117 DNA MER1_type -50 147 4 748 158 0 22 chr11 127352216 127352355 -23431198 - FLAM_C SINE Alu -1 142 7 2263 109 3 0 chr11 127355786 127356098 -23427455 - AluSp SINE Alu 0 313 1 251 254 0 0 chr11 127356213 127356268 -23427285 + GA-rich Low_complexity Low_complexity 4 58 0 183 80 0 0 chr11 127356326 127356351 -23427202 + (T)n Simple_repeat Simple_repeat 1 25 0 21 36 0 0 chr11 127356464 127356492 -23427061 + AT_rich Low_complexity Low_complexity 1 28 0 463 230 126 58 chr11 127358520 127358694 -23424859 - MIR SINE MIR -33 229 44 1004 102 3 19 chr11 127358694 127358867 -23424686 - L1P4 LINE L1 -360 5814 5653 793 195 89 0 chr11 127359105 127359274 -23424279 + MER3 DNA MER1_type 1 184 -25 445 305 123 10 chr11 127360019 127360222 -23423331 - MIR SINE MIR -6 256 31 2852 134 2 21 chr11 127360975 127361459 -23422094 + L1PA13 LINE L1 5684 6158 -5 279 0 0 0 chr11 127361535 127361566 -23421987 + (CA)n Simple_repeat Simple_repeat 2 32 0 2414 91 0 3 chr11 127361649 127361958 -23421595 - AluSg SINE Alu -2 308 1 217 100 40 0 chr11 127362051 127362101 -23421452 + (TTATA)n Simple_repeat Simple_repeat 5 56 0 293 288 38 0 chr11 127362272 127362352 -23421201 + L2 LINE L2 3231 3313 0 613 300 72 13 chr11 127363321 127363558 -23419995 + MIR SINE MIR 8 258 -4 285 318 82 9 chr11 127363651 127363761 -23419792 - L2 LINE L2 -19 3253 3136 632 279 9 70 chr11 127363824 127364100 -23419453 - L1ME1 LINE L1 -5 6161 5908 2153 97 80 45 chr11 127364100 127364452 -23419101 - THE1B LTR MaLR 0 364 1 632 279 9 70 chr11 127364452 127364516 -23419037 - L1ME1 LINE L1 -258 5908 5842 23 0 0 0 chr11 127365135 127365158 -23418395 + AT_rich Low_complexity Low_complexity 1 23 0 271 128 0 0 chr11 127365455 127365494 -23418059 - L2 LINE L2 -11 3302 3264 226 284 42 32 chr11 127365808 127365903 -23417650 + L2 LINE L2 1109 1204 -2110 1534 178 58 0 chr11 127367561 127367718 -23415835 - AluJo SINE Alu -19 293 112 270 0 0 0 chr11 127367718 127367748 -23415805 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1534 178 58 0 chr11 127367748 127367865 -23415688 - AluJo SINE Alu -200 112 3 1913 135 22 63 chr11 127369607 127369970 -23413583 + MER7A DNA MER2_type 1 346 0 180 140 60 60 chr11 127370404 127370454 -23413099 - L3 LINE CR1 -601 976 927 21 71 0 0 chr11 127371374 127371416 -23412137 + AT_rich Low_complexity Low_complexity 1 42 0 879 178 6 6 chr11 127372894 127373057 -23410496 + FAM SINE Alu 1 163 -12 439 168 134 45 chr11 127373313 127373492 -23410061 - L1ME4a LINE L1 0 6121 5927 261 0 0 0 chr11 127373937 127373966 -23409587 + (T)n Simple_repeat Simple_repeat 1 29 0 914 192 88 5 chr11 127374592 127374785 -23408768 + MER3 DNA MER1_type 1 209 0 254 0 0 77 chr11 127374842 127374881 -23408672 + (A)n Simple_repeat Simple_repeat 1 36 0 1278 195 22 88 chr11 127376155 127376555 -23406998 + MLT1A2 LTR MaLR 1 374 0 324 211 26 13 chr11 127376721 127376797 -23406756 + L1MEc LINE L1 17 93 -6303 1772 224 65 41 chr11 127376830 127377465 -23406088 + L1MEc LINE L1 1660 2309 -4087 1376 80 16 21 chr11 127377465 127377653 -23405900 - AluY SINE Alu -12 299 113 296 260 21 0 chr11 127377653 127377749 -23405804 + L1MEc LINE L1 2323 2420 -3976 2064 139 3 0 chr11 127379129 127379438 -23404115 + AluSx SINE Alu 1 310 -2 370 183 12 37 chr11 127379552 127379634 -23403919 + MER5B DNA MER1_type 1 80 -98 2326 232 106 81 chr11 127379743 127381075 -23402478 + L1MC5 LINE L1 6548 7911 -50 580 223 73 77 chr11 127381106 127381339 -23402214 + L1ME3A LINE L1 5933 6164 -6 180 0 0 0 chr11 127381574 127381594 -23401959 + (TAA)n Simple_repeat Simple_repeat 1 20 0 28 0 0 0 chr11 127381802 127381830 -23401723 + AT_rich Low_complexity Low_complexity 1 28 0 612 281 118 9 chr11 127381907 127382135 -23401418 + MIR SINE MIR 9 261 -1 1805 175 43 0 chr11 127384393 127384719 -23398834 + MER58B DNA MER1_type 2 341 0 279 295 108 47 chr11 127386520 127386649 -23396904 + L3 LINE CR1 1424 1560 -17 1972 113 24 7 chr11 127386845 127387138 -23396415 + AluSg SINE Alu 1 298 -12 679 309 44 10 chr11 127387314 127387518 -23396035 + MIR SINE MIR 20 230 -32 2136 96 3 3 chr11 127387679 127387970 -23395583 - AluSx SINE Alu -20 292 2 2891 109 5 30 chr11 127392211 127392650 -23390903 - MSTC LTR MaLR 0 428 1 3181 240 78 98 chr11 127393101 127394919 -23388634 + L1MC4 LINE L1 6100 7713 -95 570 202 8 0 chr11 127394987 127395116 -23388437 + L1MC4 LINE L1 7913 8042 0 508 296 59 30 chr11 127395234 127395606 -23387947 + L1ME4a LINE L1 5668 6050 -71 26 50 0 0 chr11 127395608 127395648 -23387905 + AT_rich Low_complexity Low_complexity 1 40 0 217 146 0 36 chr11 127396202 127396257 -23387296 + (GGGA)n Simple_repeat Simple_repeat 1 53 0 204 188 12 62 chr11 127396274 127396354 -23387199 + GA-rich Low_complexity Low_complexity 2 77 0 273 325 0 0 chr11 127397331 127397411 -23386142 + GA-rich Low_complexity Low_complexity 2 81 0 733 272 106 42 chr11 127397869 127398152 -23385401 + L2 LINE L2 3013 3313 0 350 270 35 77 chr11 127398576 127398720 -23384833 + L1ME4a LINE L1 5617 5745 -376 863 159 5 79 chr11 127398720 127398909 -23384644 + FAM SINE Alu 1 175 0 350 270 35 77 chr11 127398909 127399049 -23384504 + L1ME4a LINE L1 5745 5889 -232 227 246 70 42 chr11 127399084 127399226 -23384327 + L1ME4a LINE L1 5975 6120 -1 580 246 8 8 chr11 127400924 127401058 -23382495 + MER5B DNA MER1_type 11 144 -34 22 0 0 0 chr11 127402340 127402362 -23381191 + AT_rich Low_complexity Low_complexity 1 22 0 297 295 90 16 chr11 127403330 127403452 -23380101 + MIR3 SINE MIR 15 145 -63 330 339 120 5 chr11 127404836 127405028 -23378525 - MIR SINE MIR -29 233 20 409 311 66 15 chr11 127406103 127406376 -23377177 + L1MC1 LINE L1 4730 5016 -1130 703 110 21 14 chr11 127406388 127406533 -23377020 + (TA)n Simple_repeat Simple_repeat 2 147 0 5713 137 25 13 chr11 127406554 127407153 -23376400 + L1MC1 LINE L1 5375 5992 -341 2194 103 0 3 chr11 127407153 127407454 -23376099 + AluSg SINE Alu 1 300 -10 5713 137 25 13 chr11 127407454 127407796 -23375757 + L1MC1 LINE L1 5992 6328 -5 2095 118 0 0 chr11 127408071 127408379 -23375174 + AluSg SINE Alu 3 310 0 845 265 79 14 chr11 127408390 127408669 -23374884 + L1MC4a LINE L1 5284 5580 -2228 236 246 31 0 chr11 127408706 127408771 -23374782 + L1 LINE L1 4862 4928 -1218 * 249 206 73 15 chr11 127408763 127408831 -23374722 + L1MC4a LINE L1 7040 7111 -697 2215 214 49 25 chr11 127408845 127409401 -23374152 + L1MC4a LINE L1 7223 7791 -17 2231 118 0 6 chr11 127409409 127409723 -23373830 - AluSx SINE Alu 0 312 1 294 232 133 70 chr11 127409831 127409870 -23373683 + L1ME3A LINE L1 4919 4954 -1192 2216 125 0 0 chr11 127409870 127410173 -23373380 + AluSx SINE Alu 1 303 -9 378 0 0 0 chr11 127410173 127410215 -23373338 + (TA)n Simple_repeat Simple_repeat 2 43 0 294 232 133 70 chr11 127410215 127410519 -23373034 + L1ME3A LINE L1 4953 5285 -861 824 188 100 0 chr11 127410538 127410698 -23372855 + AluJb SINE Alu 137 312 0 227 204 0 0 chr11 127410817 127410866 -23372687 - Alu SINE Alu -168 134 86 1098 189 42 9 chr11 127410866 127411078 -23372475 - AluJo SINE Alu -92 220 2 494 249 80 76 chr11 127411270 127411571 -23371982 + L1ME3A LINE L1 5625 5926 -236 267 148 39 70 chr11 127412333 127412461 -23371092 + (TATAA)n Simple_repeat Simple_repeat 4 127 0 2332 91 0 10 chr11 127412491 127412799 -23370754 + AluSq SINE Alu 1 305 -8 1449 158 106 38 chr11 127413438 127413730 -23369823 + AluJb SINE Alu 1 312 0 203 119 24 24 chr11 127415224 127415266 -23368287 + T-rich Low_complexity Low_complexity 4 45 0 523 118 0 0 chr11 127417481 127417566 -23365987 - AluSp/q SINE Alu -1 312 228 21 36 0 0 chr11 127417997 127418025 -23365528 + AT_rich Low_complexity Low_complexity 1 28 0 1528 158 27 48 chr11 127418033 127418325 -23365228 - AluJo SINE Alu -26 286 1 843 244 51 43 chr11 127419242 127419468 -23364085 - MIR SINE MIR 0 262 32 2312 110 0 0 chr11 127419468 127419769 -23363784 - AluSg SINE Alu -9 301 1 843 244 51 43 chr11 127419769 127419796 -23363757 - MIR SINE MIR -230 32 7 28 0 0 0 chr11 127420330 127420358 -23363195 + AT_rich Low_complexity Low_complexity 1 28 0 400 332 61 24 chr11 127420873 127421120 -23362433 + MIR SINE MIR 7 262 0 1944 132 48 0 chr11 127421384 127421679 -23361874 + AluSx SINE Alu 4 312 0 333 0 0 0 chr11 127422525 127422562 -23360991 + (CA)n Simple_repeat Simple_repeat 2 38 0 2482 179 116 2 chr11 127423184 127423677 -23359876 - MER44D DNA MER2_type -1 604 1 21 0 0 0 chr11 127424368 127424389 -23359164 + AT_rich Low_complexity Low_complexity 1 21 0 251 252 114 41 chr11 127425847 127425970 -23357583 + MER5B DNA MER1_type 7 138 -40 2077 125 6 10 chr11 127430341 127430653 -23352900 - AluSx SINE Alu -1 311 1 449 283 32 34 chr11 127432931 127433253 -23350300 + L1ME2 LINE L1 5578 5850 -314 203 43 65 22 chr11 127433333 127433379 -23350174 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 2174 120 7 0 chr11 127433554 127433862 -23349691 + AluY SINE Alu 1 310 -1 288 77 0 0 chr11 127434596 127434635 -23348918 + (TG)n Simple_repeat Simple_repeat 1 39 0 1622 129 83 18 chr11 127435153 127435431 -23348122 + AluSq SINE Alu 1 296 -17 189 225 36 162 chr11 127435551 127435662 -23347891 + L3 LINE CR1 931 1027 -550 * 220 296 56 14 chr11 127435661 127435732 -23347821 + L2 LINE L2 3204 3277 -36 526 281 166 54 chr11 127437095 127437643 -23345910 + L2 LINE L2 2469 3078 -194 204 120 40 20 chr11 127437729 127437779 -23345774 + (TA)n Simple_repeat Simple_repeat 1 51 0 2165 102 0 7 chr11 127437787 127438072 -23345481 - AluSc SINE Alu -26 283 1 233 253 81 40 chr11 127438276 127438375 -23345178 + L2 LINE L2 3202 3304 -9 566 326 47 5 chr11 127440293 127440508 -23343045 + MIR SINE MIR 38 261 -1 2219 122 0 0 chr11 127440668 127440988 -23342565 - AluSx SINE Alu 0 320 1 1268 173 105 48 chr11 127441116 127441278 -23342275 + MER58B DNA MER1_type 3 154 -2266 2234 110 7 0 chr11 127441278 127441578 -23341975 + AluSx SINE Alu 1 302 -10 1268 173 105 48 chr11 127441578 127441728 -23341825 + MER58B DNA MER1_type 154 333 -8 404 333 48 48 chr11 127446091 127446277 -23337276 + L2 LINE L2 3085 3270 -2 1332 216 0 4 chr11 127446605 127446859 -23336694 - AluJb SINE Alu -11 301 49 228 353 52 43 chr11 127447746 127447862 -23335691 - L2 LINE L2 -11 3261 3145 235 275 107 74 chr11 127448003 127448152 -23335401 + L3 LINE CR1 1279 1432 -145 221 158 0 0 chr11 127448167 127448205 -23335348 + MIR3 SINE MIR 162 199 -9 192 304 96 26 chr11 127449242 127449357 -23334196 + MIR SINE MIR 20 142 -66 265 352 11 0 chr11 127449521 127449609 -23333944 - L2 LINE L2 -2 3270 3182 491 258 173 16 chr11 127451069 127451298 -23332255 + MIR SINE MIR 2 252 -10 1817 167 10 3 chr11 127451389 127451682 -23331871 + AluJb SINE Alu 1 295 -17 311 333 135 0 chr11 127451853 127451949 -23331604 - L2 LINE L2 -21 3251 3143 630 275 37 49 chr11 127451950 127452194 -23331359 - MIR SINE MIR 0 262 22 262 208 0 0 chr11 127452382 127452430 -23331123 - MIR SINE MIR -129 133 86 345 291 31 58 chr11 127453044 127453237 -23330316 + MIR SINE MIR 5 192 -63 1196 221 77 63 chr11 127453253 127453922 -23329631 + LTR41 LTR ERVL 1 766 -7 21 36 0 0 chr11 127454349 127454377 -23329176 + AT_rich Low_complexity Low_complexity 1 28 0 200 33 0 33 chr11 127455810 127455840 -23327713 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 23 33 0 0 chr11 127458807 127458837 -23324716 + AT_rich Low_complexity Low_complexity 1 30 0 1574 185 38 42 chr11 127458922 127459235 -23324318 + AluJb SINE Alu 1 312 0 1836 129 0 0 chr11 127459333 127459589 -23323964 - AluSx SINE Alu -19 293 38 183 114 0 0 chr11 127459877 127459912 -23323641 + (A)n Simple_repeat Simple_repeat 1 35 0 445 280 87 16 chr11 127462420 127462603 -23320950 + MIR SINE MIR 1 203 -59 219 264 28 56 chr11 127462693 127462765 -23320788 + L2 LINE L2 2896 2965 -307 260 276 58 58 chr11 127462765 127462852 -23320701 + L2 LINE L2 3142 3228 -44 645 272 108 17 chr11 127462865 127463097 -23320456 - MIR SINE MIR -4 258 6 225 0 0 0 chr11 127463945 127463970 -23319583 + (TC)n Simple_repeat Simple_repeat 2 26 0 571 230 87 41 chr11 127464124 127464320 -23319233 + MIR SINE MIR 54 258 -4 360 0 0 0 chr11 127464321 127464361 -23319192 + (TTA)n Simple_repeat Simple_repeat 1 40 0 244 143 36 0 chr11 127465339 127465395 -23318158 + GA-rich Low_complexity Low_complexity 2 59 0 22 0 0 0 chr11 127465659 127465681 -23317872 + AT_rich Low_complexity Low_complexity 1 22 0 290 274 0 14 chr11 127466874 127466947 -23316606 - L2 LINE L2 0 3272 3201 22 35 0 0 chr11 127466967 127466996 -23316557 + AT_rich Low_complexity Low_complexity 1 29 0 537 339 63 0 chr11 127471330 127471551 -23312002 - MIR SINE MIR -1 261 27 2569 110 3 6 chr11 127474576 127474941 -23308612 - THE1B LTR MaLR 0 364 1 953 236 17 43 chr11 127475078 127475311 -23308242 - MIR SINE MIR 0 262 36 2324 89 0 3 chr11 127475494 127475797 -23307756 - AluSx SINE Alu -10 302 1 190 125 62 0 chr11 127476461 127476493 -23307060 - L2 LINE L2 -6 3266 3233 376 229 56 49 chr11 127476556 127476700 -23306853 - MIR SINE MIR 0 262 118 782 194 88 0 chr11 127477371 127477531 -23306022 - MER5A DNA MER1_type 0 189 16 325 323 0 71 chr11 127478859 127479001 -23304552 + MIR SINE MIR 23 155 -107 1830 161 0 0 chr11 127479001 127479293 -23304260 + AluJo SINE Alu 1 292 -20 325 323 0 71 chr11 127479293 127479305 -23304248 + MIR SINE MIR 155 166 -96 1823 209 71 31 chr11 127479305 127479838 -23303715 + L1ME1 LINE L1 4775 5285 -881 2375 82 13 0 chr11 127479838 127480143 -23303410 + AluY SINE Alu 1 309 -2 1823 209 71 31 chr11 127480143 127480228 -23303325 + L1ME1 LINE L1 5285 5365 -801 3819 37 0 0 chr11 127480228 127480683 -23302870 + L1PA5 LINE L1 5698 6152 -2 1823 209 71 31 chr11 127480683 127480854 -23302699 + L1ME1 LINE L1 5365 5592 -574 1065 163 40 0 chr11 127480861 127481063 -23302490 + MER2 DNA MER2_type 2 211 -134 23 0 0 0 chr11 127481085 127481108 -23302445 + AT_rich Low_complexity Low_complexity 1 23 0 352 216 40 0 chr11 127481136 127481210 -23302343 + MER2 DNA MER2_type 269 345 0 1649 216 36 64 chr11 127481211 127481770 -23301783 + L1ME1 LINE L1 5606 6148 -18 21 57 0 0 chr11 127482059 127482094 -23301459 + AT_rich Low_complexity Low_complexity 1 35 0 246 32 0 0 chr11 127482228 127482259 -23301294 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 194 128 26 0 chr11 127482890 127482929 -23300624 + (ATAGG)n Simple_repeat Simple_repeat 4 43 0 195 162 27 0 chr11 127483437 127483474 -23300079 - L3 LINE CR1 -1260 317 280 1090 248 62 34 chr11 127484396 127484887 -23298666 - L1ME4a LINE L1 -1 6120 5609 484 250 169 25 chr11 127486182 127486342 -23297211 + MIR3 SINE MIR 16 198 -10 467 311 101 41 chr11 127486740 127487374 -23296179 + L2 LINE L2 1540 2211 -1103 486 353 60 64 chr11 127487834 127488253 -23295300 + L2 LINE L2 2827 3243 -29 192 97 0 0 chr11 127488255 127488286 -23295267 + (CA)n Simple_repeat Simple_repeat 2 32 0 27 0 0 0 chr11 127488626 127488653 -23294900 + AT_rich Low_complexity Low_complexity 1 27 0 1071 197 56 0 chr11 127489557 127489755 -23293798 - MER3 DNA MER1_type 0 209 1 2661 52 0 0 chr11 127490490 127490798 -23292755 + AluY SINE Alu 1 308 -3 250 304 0 38 chr11 127491142 127491221 -23292332 + L2 LINE L2 3236 3311 -2 2197 135 39 36 chr11 127491259 127491622 -23291931 + THE1B LTR MaLR 1 364 0 428 319 133 38 chr11 127491622 127492020 -23291533 + L2 LINE L2 2214 2649 -665 1825 151 25 0 chr11 127492163 127492469 -23291084 - AluJo SINE Alu 0 313 1 241 306 112 59 chr11 127492562 127492732 -23290821 + L2 LINE L2 2918 3096 -176 334 371 52 33 chr11 127495564 127495777 -23287776 - L2 LINE L2 -161 3111 2895 293 382 42 14 chr11 127495814 127496026 -23287527 - L2 LINE L2 -481 2833 2616 209 329 24 82 chr11 127496090 127496217 -23287336 - L2 LINE L2 -824 2490 2374 2343 86 3 3 chr11 127496217 127496520 -23287033 - AluSg SINE Alu -7 303 1 209 329 24 82 chr11 127496520 127496562 -23286991 - L2 LINE L2 -940 2374 2331 320 324 44 0 chr11 127498664 127498800 -23284753 - MIR SINE MIR -5 257 116 1982 129 0 0 chr11 127502059 127502330 -23281223 - AluSx SINE Alu -30 282 12 198 167 0 0 chr11 127504275 127504311 -23279242 + (CACCAT)n Simple_repeat Simple_repeat 4 39 0 2179 106 3 0 chr11 127504918 127505250 -23278303 - AluSp SINE Alu 0 333 1 360 0 0 0 chr11 127509787 127509827 -23273726 + (A)n Simple_repeat Simple_repeat 1 40 0 210 314 51 29 chr11 127509827 127509964 -23273589 + L3 LINE CR1 1146 1285 -292 26 0 0 0 chr11 127511290 127511316 -23272237 + AT_rich Low_complexity Low_complexity 1 26 0 453 197 9 174 chr11 127511402 127511620 -23271933 + MIR3 SINE MIR 25 206 -2 24 91 0 0 chr11 127512908 127512974 -23270579 + AT_rich Low_complexity Low_complexity 1 66 0 476 193 9 0 chr11 127513010 127513119 -23270434 + CT-rich Low_complexity Low_complexity 1 110 0 1668 154 0 42 chr11 127513122 127513408 -23270145 - AluJb SINE Alu -38 274 1 203 171 0 0 chr11 127514482 127514517 -23269036 + T-rich Low_complexity Low_complexity 2 36 0 2011 155 0 7 chr11 127515022 127515319 -23268234 + AluSx SINE Alu 1 295 -17 348 323 142 0 chr11 127515564 127515719 -23267834 - MER5B DNA MER1_type -1 177 1 213 319 14 14 chr11 127515765 127515834 -23267719 + L2 LINE L2 3202 3270 -2 215 274 178 15 chr11 127516946 127517081 -23266472 + MIR SINE MIR 56 212 -50 * 562 286 33 25 chr11 127517041 127517286 -23266267 - MIR SINE MIR -14 248 2 283 242 11 21 chr11 127517354 127517449 -23266104 + (TA)n Simple_repeat Simple_repeat 1 94 0 618 203 7 68 chr11 127517525 127517673 -23265880 + MER5A DNA MER1_type 1 139 -50 537 151 0 21 chr11 127517676 127517769 -23265784 - MER21B LTR ERV1 -444 419 329 418 182 0 0 chr11 127517769 127517835 -23265718 + MER5A DNA MER1_type 124 189 0 501 268 87 52 chr11 127518388 127518619 -23264934 + MIR SINE MIR 23 261 -1 1566 205 0 13 chr11 127518691 127518993 -23264560 + AluJo SINE Alu 1 298 -14 263 240 339 8 chr11 127520637 127520758 -23262795 + MIR SINE MIR 95 255 -7 1788 214 58 58 chr11 127520761 127521265 -23262288 - MLT1D LTR MaLR 0 505 2 1919 120 10 52 chr11 127526315 127526623 -23256930 - AluSx SINE Alu -15 297 3 202 322 76 35 chr11 127526678 127526849 -23256704 + L2 LINE L2 2806 2983 -289 1464 185 56 74 chr11 127527677 127528055 -23255498 - MLT1A2 LTR MaLR 0 374 4 282 296 44 22 chr11 127529391 127529526 -23254027 + MIR SINE MIR 84 221 -41 2230 115 0 0 chr11 127529658 127529953 -23253600 - AluSq SINE Alu -18 295 1 195 42 0 0 chr11 127531844 127531868 -23251685 + (CGG)n Simple_repeat Simple_repeat 3 26 0 32 0 0 0 chr11 127532616 127532648 -23250905 + GC_rich Low_complexity Low_complexity 1 32 0 243 0 0 0 chr11 127533848 127533875 -23249678 + (A)n Simple_repeat Simple_repeat 1 27 0 186 167 0 0 chr11 127536240 127536276 -23247277 + (TA)n Simple_repeat Simple_repeat 2 37 0 353 332 36 25 chr11 127536399 127536595 -23246958 - MIR3 SINE MIR 0 208 11 446 233 92 34 chr11 127537171 127537377 -23246176 - L1MC5 LINE L1 -37 7924 7707 26 0 0 0 chr11 127540387 127540413 -23243140 + AT_rich Low_complexity Low_complexity 1 26 0 2100 242 118 130 chr11 127541943 127543281 -23240272 - L1MC4 LINE L1 -1 8041 6547 278 177 194 0 chr11 127543281 127543343 -23240210 + Tigger2 DNA MER2_type 2635 2708 -10 2100 242 118 130 chr11 127543343 127543943 -23239610 - L1MC4 LINE L1 -1495 6547 5941 3298 64 14 0 chr11 127544086 127544506 -23239047 - L1PA6 LINE L1 -4 6150 5725 2297 99 0 3 chr11 127544603 127544907 -23238646 - AluY SINE Alu -8 303 1 298 211 95 11 chr11 127545271 127545366 -23238187 - MIR SINE MIR -70 192 90 2471 67 0 3 chr11 127545797 127546095 -23237458 - AluY SINE Alu -14 297 1 250 306 63 91 chr11 127546536 127546640 -23236913 + L2 LINE L2 2590 2695 -577 3471 162 35 32 chr11 127546640 127547127 -23236426 + L1MB8 LINE L1 5481 5972 -206 3849 118 25 4 chr11 127547127 127547684 -23235869 + MER61E LTR ERV1 1 569 0 3471 162 35 32 chr11 127547684 127547883 -23235670 + L1MB8 LINE L1 5972 6169 -9 250 306 63 91 chr11 127547883 127548423 -23235130 + L2 LINE L2 2695 3207 -65 200 265 94 51 chr11 127548550 127548647 -23234906 + MIR SINE MIR 8 112 -150 1647 112 12 17 chr11 127548647 127548888 -23234665 + AluSg/x SINE Alu 70 309 -3 200 265 94 51 chr11 127548888 127548907 -23234646 + MIR SINE MIR 112 129 -133 225 259 62 25 chr11 127548937 127549018 -23234535 - MIR SINE MIR -62 200 117 2423 232 18 43 chr11 127549456 127550081 -23233472 - MER45B DNA AcHobo -386 654 46 2113 133 0 19 chr11 127550851 127551168 -23232385 - AluJb SINE Alu -1 311 1 2265 95 7 3 chr11 127551377 127551681 -23231872 - AluSx SINE Alu -7 305 1 446 275 84 74 chr11 127551682 127552159 -23231394 - L1ME4a LINE L1 -20 6101 5610 844 152 0 15 chr11 127552159 127552291 -23231262 + FLAM_C SINE Alu 1 130 -3 446 275 84 74 chr11 127552291 127552444 -23231109 - L1ME4a LINE L1 -511 5610 5460 378 0 0 0 chr11 127552903 127552945 -23230608 + (T)n Simple_repeat Simple_repeat 1 42 0 281 321 0 0 chr11 127553825 127553909 -23229644 + L2 LINE L2 2992 3075 -238 234 0 0 0 chr11 127553938 127553964 -23229589 + (TA)n Simple_repeat Simple_repeat 2 27 0 208 232 0 58 chr11 127553966 127554035 -23229518 + L2 LINE L2 3159 3223 -90 332 236 75 68 chr11 127554750 127554796 -23228757 + L2 LINE L2 3151 3195 -118 2959 164 4 2 chr11 127554796 127555266 -23228287 + MER70A LTR ERVL 2 472 0 332 236 75 68 chr11 127555266 127555380 -23228173 + L2 LINE L2 3195 3312 -1 698 224 6 12 chr11 127555427 127555588 -23227965 + MER5B DNA MER1_type 8 167 -11 215 209 75 30 chr11 127556345 127556412 -23227141 + L2 LINE L2 3185 3254 -18 533 83 12 0 chr11 127556480 127556564 -23226989 - L1MB8 LINE L1 -1 6177 6093 1371 216 23 7 chr11 127556578 127556883 -23226670 - L1MB4 LINE L1 -1 6179 5870 1150 219 13 8 chr11 127559125 127559363 -23224190 - MER8 DNA MER2_type 0 239 1 996 286 78 27 chr11 127559385 127559618 -23223935 - MLT1J2 LTR MaLR -17 433 168 2403 106 0 0 chr11 127559618 127559921 -23223632 - AluSg SINE Alu -7 303 1 996 286 78 27 chr11 127559921 127560099 -23223454 - MLT1J2 LTR MaLR -282 168 1 2080 107 3 28 chr11 127560397 127560686 -23222867 + AluSx SINE Alu 1 282 -30 509 331 68 80 chr11 127560743 127561281 -23222272 + L2 LINE L2 2723 3248 -24 333 221 176 37 chr11 127561924 127562060 -23221493 - L2 LINE L2 0 3313 3159 247 113 32 16 chr11 127563262 127563324 -23220229 + A-rich Low_complexity Low_complexity 5 67 0 294 324 22 93 chr11 127563787 127564065 -23219488 - L2 LINE L2 -94 3178 2921 1568 136 0 21 chr11 127564811 127565047 -23218506 + AluJb SINE Alu 1 231 -81 284 341 39 16 chr11 127566113 127566242 -23217311 - L3 LINE CR1 -215 1362 1231 277 302 19 82 chr11 127566762 127566799 -23216754 - MER5B DNA MER1_type -29 149 111 540 233 86 12 chr11 127566799 127566962 -23216591 - MER96 DNA MER1_type 0 175 1 277 302 19 82 chr11 127566962 127567083 -23216470 - MER5B DNA MER1_type -67 111 1 323 208 0 14 chr11 127567463 127567535 -23216018 - L2 LINE L2 -1 3271 3201 201 167 0 0 chr11 127567624 127567660 -23215893 + A-rich Low_complexity Low_complexity 2 37 0 600 192 62 14 chr11 127567665 127567811 -23215742 + MER103 DNA DNA 8 160 -6 1038 320 91 45 chr11 127567888 127568334 -23215219 - L3 LINE CR1 -561 1016 531 2128 167 3 0 chr11 127568334 127568681 -23214872 + MER7A DNA MER2_type 1 346 0 1038 320 91 45 chr11 127568681 127568871 -23214682 - L3 LINE CR1 -1046 531 351 354 207 14 71 chr11 127568888 127569028 -23214525 - L1ME4a LINE L1 0 6121 5990 600 126 0 0 chr11 127569033 127569120 -23214433 - AluSg/x SINE Alu -11 299 213 339 246 82 73 chr11 127569120 127569230 -23214323 - L2 LINE L2 -18 3295 3185 303 49 0 0 chr11 127569233 127569274 -23214279 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 352 343 66 86 chr11 127569347 127569446 -23214107 - L3 LINE CR1 -1219 358 259 1535 174 16 43 chr11 127569446 127569751 -23213802 - AluJb SINE Alu -15 297 1 800 167 0 8 chr11 127569752 127569878 -23213675 - FLAM_A SINE Alu -5 128 4 352 343 66 86 chr11 127569878 127570138 -23213415 - L3 LINE CR1 -1317 260 4 204 147 0 0 chr11 127570449 127570483 -23213070 - MIR SINE MIR -55 153 120 289 245 19 47 chr11 127571473 127571579 -23211974 + GA-rich Low_complexity Low_complexity 2 104 0 326 242 281 0 chr11 127573090 127573218 -23210335 - MER5A DNA MER1_type 0 189 26 214 179 0 0 chr11 127573480 127573519 -23210034 + (CAATT)n Simple_repeat Simple_repeat 4 42 0 601 253 34 82 chr11 127573727 127573889 -23209664 + MIR SINE MIR 31 180 -82 2297 123 0 0 chr11 127573889 127574199 -23209354 + AluY SINE Alu 1 310 -1 601 253 34 82 chr11 127574199 127574269 -23209284 + MIR SINE MIR 180 252 -10 366 280 129 40 chr11 127574279 127574604 -23208949 - L2 LINE L2 -1028 2286 1933 279 322 59 0 chr11 127574650 127574768 -23208785 + L2 LINE L2 3117 3241 -31 218 346 135 0 chr11 127575950 127576054 -23207499 + L2 LINE L2 3154 3271 -1 1355 171 111 11 chr11 127577602 127577882 -23205671 - AluJb SINE Alu -4 308 1 474 293 58 11 chr11 127578347 127578521 -23205032 + MIR3 SINE MIR 16 197 -11 643 153 0 0 chr11 127580033 127580131 -23203422 + FLAM_A SINE Alu 10 107 -35 254 202 245 0 chr11 127580172 127580266 -23203287 + MIR SINE MIR 133 249 -13 272 139 23 52 chr11 127580290 127580463 -23203090 + (TA)n Simple_repeat Simple_repeat 2 169 0 1908 137 29 0 chr11 127580493 127580770 -23202783 - AluSx SINE Alu -27 285 1 1049 192 91 70 chr11 127581038 127581098 -23202455 - MER46C DNA MER2_type -25 313 256 1916 142 24 0 chr11 127581098 127581386 -23202167 + AluSx SINE Alu 1 295 -17 1049 192 91 70 chr11 127581386 127581611 -23201942 - MER46C DNA MER2_type -82 256 22 627 274 42 30 chr11 127581648 127581885 -23201668 - MIR SINE MIR 0 262 23 325 297 62 8 chr11 127582907 127583035 -23200518 + L2 LINE L2 3171 3305 -8 583 88 11 44 chr11 127583036 127583127 -23200426 + FLAM_C SINE Alu 36 123 -20 205 239 0 56 chr11 127583674 127583745 -23199808 + CT-rich Low_complexity Low_complexity 3 69 0 3336 117 18 0 chr11 127585320 127585774 -23197779 + MER1A DNA MER1_type 68 529 0 445 319 116 10 chr11 127585779 127585986 -23197567 + MIR SINE MIR 20 248 -14 2119 116 7 3 chr11 127586103 127586405 -23197148 - AluSx SINE Alu -9 303 1 278 341 6 29 chr11 127586428 127586601 -23196952 + (TG)n Simple_repeat Simple_repeat 2 170 0 245 388 48 12 chr11 127586641 127586806 -23196747 + L2 LINE L2 2934 3104 -168 367 325 58 0 chr11 127586938 127587058 -23196495 + MIR SINE MIR 117 243 -19 1696 156 7 0 chr11 127587125 127587401 -23196152 + AluSx SINE Alu 1 278 -34 207 0 0 0 chr11 127587401 127587424 -23196129 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 219 69 0 0 chr11 127587423 127587452 -23196101 + (TA)n Simple_repeat Simple_repeat 1 29 0 1312 156 6 9 chr11 127588907 127589132 -23194421 - MLT2B2 LTR ERVL 0 515 243 823 302 181 16 chr11 127589160 127589729 -23193824 - L2 LINE L2 -940 2374 1712 1767 153 53 7 chr11 127589735 127590002 -23193551 - MLT2B2 LTR ERVL 0 515 262 200 86 29 0 chr11 127590002 127590037 -23193516 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1767 153 53 7 chr11 127590037 127590211 -23193342 - MLT2B2 LTR ERVL -253 262 1 1303 211 7 30 chr11 127590333 127590636 -23192917 - AluJo SINE Alu -16 296 1 1038 97 0 21 chr11 127591867 127592012 -23191541 + AluSq/x SINE Alu 1 142 -171 1387 203 4 4 chr11 127592117 127592378 -23191175 - AluJb SINE Alu -51 261 1 326 282 147 18 chr11 127594319 127594482 -23189071 - L2 LINE L2 -3 3310 3127 181 261 116 43 chr11 127594764 127594833 -23188720 - MIR SINE MIR -183 79 6 180 0 0 0 chr11 127594905 127594925 -23188628 + (TA)n Simple_repeat Simple_repeat 2 21 0 202 143 0 29 chr11 127594931 127594966 -23188587 - MIR SINE MIR -66 196 163 892 235 20 5 chr11 127595184 127595246 -23188307 - MIR SINE MIR -37 225 165 1953 136 3 3 chr11 127595246 127595548 -23188005 + AluSx SINE Alu 1 302 -10 892 235 20 5 chr11 127595548 127595685 -23187868 - MIR SINE MIR -97 165 23 278 320 94 30 chr11 127595904 127596107 -23187446 - L2 LINE L2 -397 2917 2702 355 192 0 3 chr11 127596110 127596178 -23187375 + AluS SINE Alu 2 57 -246 2178 78 17 0 chr11 127596289 127596584 -23186969 - AluY SINE Alu -11 300 1 3066 92 31 0 chr11 127596613 127597037 -23186516 + L1PA11 LINE L1 5718 6154 -20 252 59 0 0 chr11 127597042 127597076 -23186477 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 789 144 23 23 chr11 127597082 127597214 -23186339 + AluJo SINE Alu 4 135 -177 547 208 54 23 chr11 127597218 127597348 -23186205 + MER45 DNA AcHobo 1448 1581 0 214 242 414 0 chr11 127597356 127597455 -23186098 + MIR SINE MIR 89 228 -34 552 344 68 28 chr11 127597503 127597928 -23185625 - L2 LINE L2 -2295 1019 578 379 146 0 0 chr11 127598522 127598577 -23184976 + U6 snRNA snRNA 1 55 -52 23 0 0 0 chr11 127599866 127599889 -23183664 + AT_rich Low_complexity Low_complexity 1 23 0 402 21 0 0 chr11 127600106 127600153 -23183400 + (TG)n Simple_repeat Simple_repeat 2 48 0 233 75 25 0 chr11 127600773 127600813 -23182740 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 217 321 83 0 chr11 127601492 127601576 -23181977 + MIR SINE MIR 64 154 -108 389 313 70 48 chr11 127601781 127602011 -23181542 - L2 LINE L2 -1 3312 3078 539 304 21 66 chr11 127602567 127602853 -23180700 - L2 LINE L2 -223 3090 2818 249 254 17 0 chr11 127603502 127603561 -23179992 + CT-rich Low_complexity Low_complexity 3 62 0 190 314 19 19 chr11 127603638 127603743 -23179810 + MIR SINE MIR 158 262 0 396 138 138 0 chr11 127604176 127604256 -23179297 - MER20 DNA MER1_type 0 219 129 4061 117 58 58 chr11 127604789 127605009 -23178544 - MER50 LTR ERV1 -23 711 492 2279 89 0 6 chr11 127605009 127605323 -23178230 - AluSq SINE Alu -1 312 1 4061 117 58 58 chr11 127605323 127605639 -23177914 - MER50 LTR ERV1 -242 492 172 2066 127 13 0 chr11 127605639 127605946 -23177607 - AluSx SINE Alu -1 311 1 4061 117 58 58 chr11 127605946 127606119 -23177434 - MER50 LTR ERV1 -561 173 1 391 309 205 0 chr11 127606155 127606365 -23177188 + L3 LINE CR1 1319 1571 -6 1076 157 248 39 chr11 127606599 127607100 -23176453 - LTR29 LTR ERV1 0 607 1 235 245 0 38 chr11 127607312 127607365 -23176188 + L2 LINE L2 3195 3245 -27 191 364 30 10 chr11 127608189 127608288 -23175265 - L2 LINE L2 -217 3055 2955 512 203 51 34 chr11 127608971 127609089 -23174464 + L2 LINE L2 3193 3312 -1 314 290 84 8 chr11 127609477 127609608 -23173945 + MIR SINE MIR 77 217 -45 1977 142 0 0 chr11 127609902 127610204 -23173349 - AluSx SINE Alu -10 302 1 312 369 58 0 chr11 127610440 127610579 -23172974 + MIR SINE MIR 8 153 -68 252 188 21 0 chr11 127610577 127610625 -23172928 - L2 LINE L2 -4 3309 3261 * 2719 16 0 0 chr11 127610723 127611029 -23172524 + AluYb8 SINE Alu 2 307 -11 344 40 20 0 chr11 127611957 127612007 -23171546 + (TG)n Simple_repeat Simple_repeat 1 51 0 223 170 0 0 chr11 127612301 127612348 -23171205 + T-rich Low_complexity Low_complexity 1 47 0 224 258 30 0 chr11 127612367 127612397 -23171156 + GA-rich Low_complexity Low_complexity 3 31 -39 2311 91 0 0 chr11 127612397 127612706 -23170847 + AluSq SINE Alu 5 313 0 224 258 30 0 chr11 127612706 127612741 -23170812 + GA-rich Low_complexity Low_complexity 31 70 0 201 154 0 0 chr11 127613119 127613158 -23170395 + (TG)n Simple_repeat Simple_repeat 1 39 0 231 125 0 0 chr11 127613293 127613333 -23170220 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 254 298 21 32 chr11 127613629 127613723 -23169830 + MIR SINE MIR 5 97 -165 1000 203 5 16 chr11 127613921 127614108 -23169445 - MER8 DNA MER2_type 0 239 55 1032 296 46 3 chr11 127614110 127614502 -23169051 + HAL1 LINE L1 2099 2507 0 274 279 15 0 chr11 127614507 127614575 -23168978 + MIR SINE MIR 184 252 -10 1319 134 31 118 chr11 127614588 127614946 -23168607 + AluYb8 SINE Alu 1 330 0 2140 211 39 22 chr11 127615215 127615708 -23167845 + MLT1D LTR MaLR 1 501 -4 221 237 215 54 chr11 127615898 127615943 -23167610 + L2 LINE L2 3206 3242 -71 1446 181 86 31 chr11 127615943 127616268 -23167285 - MER2 DNA MER2_type -1 343 1 221 237 215 54 chr11 127616268 127616315 -23167238 + L2 LINE L2 3242 3313 0 432 264 36 29 chr11 127616405 127616545 -23167008 - L3b LINE CR1 -178 1405 1265 609 299 58 29 chr11 127616852 127617093 -23166460 + MIR SINE MIR 13 260 -2 219 69 0 0 chr11 127617218 127617247 -23166306 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 328 94 0 47 chr11 127617576 127617640 -23165913 + (TCCCC)n Simple_repeat Simple_repeat 4 64 0 1228 43 5 27 chr11 127617650 127617834 -23165719 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1690 150 35 7 chr11 127617846 127618133 -23165420 - AluSx SINE Alu -8 304 10 746 284 72 45 chr11 127618141 127618171 -23165382 + MLT1I LTR MaLR 35 63 -346 2477 110 95 0 chr11 127618171 127618562 -23164991 + MSTA LTR MaLR 1 428 0 746 284 72 45 chr11 127618562 127618890 -23164663 + MLT1I LTR MaLR 63 403 -6 549 271 39 15 chr11 127619261 127619470 -23164083 - MIR SINE MIR -52 210 3 201 39 0 0 chr11 127619580 127619606 -23163947 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2131 113 0 3 chr11 127619830 127620131 -23163422 - AluSx SINE Alu -8 304 5 325 300 136 36 chr11 127620140 127620280 -23163273 + L2 LINE L2 3030 3183 -89 476 307 20 13 chr11 127620314 127620464 -23163089 + MIR3 SINE MIR 40 190 -18 500 190 20 11 chr11 127620609 127620735 -23162818 + L1ME2 LINE L1 4782 4910 -1236 1026 192 10 0 chr11 127620777 127620970 -23162583 - AluJo SINE Alu -111 201 7 496 229 46 8 chr11 127620973 127621104 -23162449 + L1ME2 LINE L1 4905 5040 -1106 1870 157 0 0 chr11 127621104 127621397 -23162156 + AluJb SINE Alu 1 293 -19 1885 136 7 7 chr11 127621397 127621691 -23161862 + AluSx SINE Alu 7 300 -12 1402 117 0 10 chr11 127621704 127621969 -23161584 + AluSg/x SINE Alu 80 342 0 3107 202 86 35 chr11 127621978 127622759 -23160794 + L1ME2 LINE L1 5283 6110 -54 1594 175 49 3 chr11 127622759 127623044 -23160509 - AluSx SINE Alu -14 298 1 3107 202 86 35 chr11 127623044 127623092 -23160461 + L1ME2 LINE L1 6110 6154 -10 283 212 47 148 chr11 127623130 127623366 -23160187 + L1MC4 LINE L1 7830 8041 -1 1724 139 85 0 chr11 127623534 127623815 -23159738 - AluSq SINE Alu -8 305 1 387 0 0 0 chr11 127625428 127625471 -23158082 + (TG)n Simple_repeat Simple_repeat 2 44 0 273 296 25 75 chr11 127626928 127627098 -23156455 + MER5B DNA MER1_type 23 187 -2 277 306 8 50 chr11 127627376 127627497 -23156056 + MIR3 SINE MIR 86 201 -7 203 208 167 0 chr11 127628129 127628177 -23155376 - L2 LINE L2 -850 2464 2409 4543 62 3 0 chr11 127628266 127628842 -23154711 - L1PA6 LINE L1 -1 6153 5576 180 286 19 76 chr11 127628858 127628963 -23154590 - L2 LINE L2 -4 3268 3170 201 287 11 0 chr11 127629325 127629412 -23154141 + (ATTG)n Simple_repeat Simple_repeat 2 89 0 180 0 0 0 chr11 127629959 127629979 -23153574 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1733 252 157 12 chr11 127630801 127631065 -23152488 + L2 LINE L2 2310 2534 -779 1016 226 27 27 chr11 127631065 127631326 -23152227 + MIR SINE MIR 2 262 0 1733 252 157 12 chr11 127631326 127631939 -23151614 + L2 LINE L2 2534 3313 0 180 261 14 72 chr11 127631934 127632003 -23151550 + MIR3 SINE MIR 137 201 -7 * 200 336 35 60 chr11 127632060 127632176 -23151377 - MIR3 SINE MIR -95 113 1 457 301 100 13 chr11 127632900 127633139 -23150414 - MIR SINE MIR 0 262 3 250 286 0 0 chr11 127633316 127633372 -23150181 + L2 LINE L2 3217 3272 0 806 141 0 16 chr11 127633377 127633505 -23150048 + FLAM_C SINE Alu 1 126 -17 1610 147 85 0 chr11 127633626 127633898 -23149655 - AluSx SINE Alu -17 295 1 1333 247 91 31 chr11 127633940 127634454 -23149099 + L1ME4a LINE L1 5543 6087 -34 2051 129 0 0 chr11 127634677 127634972 -23148581 - AluSx SINE Alu -17 295 1 487 287 21 14 chr11 127635639 127635782 -23147771 - MIR SINE MIR -50 212 69 938 190 0 23 chr11 127636427 127636601 -23146952 - AluJb SINE Alu -6 306 137 394 164 14 0 chr11 127636891 127636964 -23146589 - LTR33A LTR ERVL -9 514 441 337 313 56 0 chr11 127636970 127637114 -23146439 - LTR50 LTR ERVL -170 625 474 839 243 255 10 chr11 127637114 127637530 -23146023 - LTR50 LTR ERVL -240 555 38 21 0 0 0 chr11 127637713 127637734 -23145819 + AT_rich Low_complexity Low_complexity 1 21 0 1890 167 11 33 chr11 127638677 127638726 -23144827 - L1MB3 LINE L1 0 6183 6134 1982 137 7 33 chr11 127638726 127639033 -23144520 - AluJb SINE Alu -13 299 1 1890 167 11 33 chr11 127639033 127639343 -23144210 - L1MB3 LINE L1 -49 6134 5832 309 290 32 11 chr11 127639461 127639554 -23143999 - L3 LINE CR1 -1 1576 1482 21 36 0 0 chr11 127639588 127639616 -23143937 + AT_rich Low_complexity Low_complexity 1 28 0 2387 104 7 0 chr11 127639819 127640127 -23143426 - AluSx SINE Alu -2 310 1 227 263 175 76 chr11 127640353 127640524 -23143029 - L3b LINE CR1 -196 1387 1200 2299 104 7 7 chr11 127642462 127642770 -23140783 - AluSx SINE Alu -3 309 2 401 300 49 54 chr11 127642798 127643021 -23140532 - MIR SINE MIR 0 262 41 398 282 34 17 chr11 127644953 127645070 -23138483 + MIR SINE MIR 86 204 -58 370 209 136 136 chr11 127645137 127645254 -23138299 - MIR SINE MIR -16 246 127 638 165 0 0 chr11 127645254 127645357 -23138196 - U13 snRNA snRNA 0 104 2 370 209 136 136 chr11 127645357 127645445 -23138108 - MIR SINE MIR -134 128 41 22 0 0 0 chr11 127646653 127646675 -23136878 + AT_rich Low_complexity Low_complexity 1 22 0 584 300 32 65 chr11 127646675 127646707 -23136846 - MIR SINE MIR -13 249 217 2048 125 0 0 chr11 127646707 127646979 -23136574 - AluSx SINE Alu -2 310 39 584 300 32 65 chr11 127646979 127647083 -23136470 - MIR SINE MIR -45 217 122 2155 119 0 56 chr11 127647083 127647402 -23136151 - AluSx SINE Alu -11 301 1 584 300 32 65 chr11 127647402 127647511 -23136042 - MIR SINE MIR -140 122 11 245 167 0 17 chr11 127648299 127648359 -23135194 + CT-rich Low_complexity Low_complexity 1 59 0 581 304 106 0 chr11 127649024 127649241 -23134312 - MIR SINE MIR -2 260 21 232 228 0 53 chr11 127649491 127649548 -23134005 - MIR3 SINE MIR -48 160 107 2326 116 3 6 chr11 127650762 127651073 -23132480 - AluSq SINE Alu -3 310 1 1660 89 0 4 chr11 127651128 127651364 -23132189 - pTR5 LTR ERV1 -2032 406 172 311 255 10 0 chr11 127651367 127651465 -23132088 - LTR30 LTR ERV1 -80 642 544 5443 120 56 62 chr11 127651465 127652629 -23130924 - pTR5 LTR ERV1 -413 2025 730 251 286 9 38 chr11 127653354 127653459 -23130094 + MIR SINE MIR 48 149 -113 279 0 0 0 chr11 127653482 127653513 -23130040 + (TG)n Simple_repeat Simple_repeat 2 32 0 2280 102 3 0 chr11 127653535 127653830 -23129723 - AluSx SINE Alu -16 296 1 241 330 117 0 chr11 127653958 127654061 -23129492 - L2 LINE L2 0 3313 3199 1044 98 44 33 chr11 127654182 127654365 -23129188 + L1MA5A LINE L1 6112 6296 -1 2295 92 7 3 chr11 127654542 127654834 -23128719 + AluSq SINE Alu 1 293 -20 342 269 19 19 chr11 127654868 127654972 -23128581 + MIR3 SINE MIR 58 161 -47 258 237 68 0 chr11 127655694 127655753 -23127800 - L2 LINE L2 -3 3310 3248 189 145 43 116 chr11 127655957 127656026 -23127527 + L2 LINE L2 3160 3223 -49 376 276 37 37 chr11 127656582 127656716 -23126837 + MIR SINE MIR 120 253 -9 189 352 0 0 chr11 127656738 127656792 -23126761 - L2 LINE L2 -210 3062 3009 248 350 80 20 chr11 127657143 127657343 -23126210 + L3b LINE CR1 1257 1468 -115 338 262 120 58 chr11 127658133 127658324 -23125229 + MIR SINE MIR 12 214 -48 901 227 106 0 chr11 127659021 127659228 -23124325 - MIR SINE MIR -21 241 13 356 286 53 30 chr11 127660056 127660189 -23123364 - L2 LINE L2 -1 3271 3136 442 294 80 32 chr11 127661382 127661569 -23121984 + L3b LINE CR1 1354 1549 -34 200 272 22 76 chr11 127663039 127663131 -23120422 - L2 LINE L2 -49 3223 3137 1049 157 52 8 chr11 127664802 127665148 -23118405 - Tigger1 DNA MER2_type -4 2414 1 382 60 0 0 chr11 127665386 127665436 -23118117 + MER51D LTR ERV1 500 549 -108 294 50 0 0 chr11 127665436 127665476 -23118077 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 2015 150 16 0 chr11 127665510 127665816 -23117737 - AluJb SINE Alu -1 311 1 2270 114 0 0 chr11 127665912 127666211 -23117342 - AluSq SINE Alu -14 299 1 1526 187 13 20 chr11 127666508 127666808 -23116745 - AluJb SINE Alu -1 311 14 448 298 23 8 chr11 127666830 127666961 -23116592 - MIR SINE MIR -109 153 21 * 829 250 20 20 chr11 127666960 127667160 -23116393 - MIR SINE MIR -62 200 1 344 198 47 35 chr11 127667160 127667246 -23116307 - MIR SINE MIR -23 239 153 722 254 37 31 chr11 127667442 127667696 -23115857 - MIR SINE MIR 0 262 11 579 264 45 0 chr11 127669001 127669156 -23114397 + MIR SINE MIR 47 208 -54 1819 161 0 47 chr11 127669345 127669662 -23113891 + AluJo SINE Alu 1 302 -10 2172 141 31 3 chr11 127669666 127670048 -23113505 - L1MB3 LINE L1 -52 6131 5739 441 311 106 52 chr11 127670143 127670567 -23112986 - L2 LINE L2 -7 3265 2819 1945 154 80 11 chr11 127670697 127671048 -23112505 + THE1C LTR MaLR 1 375 0 455 289 47 1 chr11 127671396 127671543 -23112010 + MIR SINE MIR 15 166 -61 616 282 108 9 chr11 127672599 127672812 -23110741 + MIR SINE MIR 13 246 -16 27 81 0 0 chr11 127672816 127672878 -23110675 + AT_rich Low_complexity Low_complexity 1 62 0 183 184 0 0 chr11 127672917 127672955 -23110598 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 306 276 31 20 chr11 127673037 127673135 -23110418 + MIR3 SINE MIR 110 208 0 1185 264 57 54 chr11 127673143 127673568 -23109985 - L2 LINE L2 0 3313 2888 433 271 73 17 chr11 127673975 127674152 -23109401 + MIR3 SINE MIR 17 203 -5 2855 110 34 5 chr11 127675393 127675803 -23107750 - MSTA LTR MaLR -2 426 5 210 37 0 0 chr11 127676179 127676206 -23107347 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1787 159 7 23 chr11 127676223 127676531 -23107022 + AluJo SINE Alu 2 304 -8 904 174 0 0 chr11 127676531 127676675 -23106878 - FRAM SINE Alu -32 144 1 291 204 126 58 chr11 127676754 127676857 -23106696 + MIR3 SINE MIR 91 200 -8 1561 185 80 0 chr11 127679254 127679373 -23104180 + AluJb SINE Alu 1 109 -203 273 98 0 0 chr11 127679373 127679414 -23104139 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1561 185 80 0 chr11 127679414 127679580 -23103973 + AluJb SINE Alu 109 309 -3 329 42 0 21 chr11 127679613 127679661 -23103892 + (TA)n Simple_repeat Simple_repeat 2 48 0 27 29 0 0 chr11 127679683 127679717 -23103836 + AT_rich Low_complexity Low_complexity 1 34 0 295 345 164 0 chr11 127679833 127679998 -23103555 - MIR SINE MIR -65 197 6 1928 152 0 13 chr11 127680545 127680854 -23102699 - AluJb SINE Alu -7 305 1 336 277 174 7 chr11 127681757 127681892 -23101661 - MIR3 SINE MIR -1 207 49 401 290 83 121 chr11 127682304 127682735 -23100818 + L2 LINE L2 2853 3267 -5 2109 143 0 0 chr11 127682746 127683040 -23100513 + AluJb SINE Alu 16 309 -3 291 299 13 0 chr11 127683067 127683144 -23100409 - MIR SINE MIR 0 262 185 261 299 165 0 chr11 127683168 127683265 -23100288 + MIR SINE MIR 37 149 -59 553 219 22 96 chr11 127684805 127684983 -23098570 - MER5B DNA MER1_type -9 169 5 2264 79 55 3 chr11 127685862 127686152 -23097401 - AluSx SINE Alu -7 305 1 294 320 118 6 chr11 127686155 127686333 -23097220 - L2 LINE L2 -15 3298 3101 340 249 49 129 chr11 127686366 127686495 -23097058 - MIR SINE MIR -52 210 105 2360 73 9 29 chr11 127686495 127686683 -23096870 - AluY SINE Alu -2 309 128 387 0 0 0 chr11 127686683 127686726 -23096827 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2360 73 9 29 chr11 127686726 127686852 -23096701 - AluY SINE Alu -183 128 1 340 249 49 129 chr11 127686852 127686947 -23096606 - MIR SINE MIR -157 105 4 978 241 19 5 chr11 127687297 127687504 -23096049 + MIR SINE MIR 53 262 0 261 0 0 0 chr11 127687518 127687547 -23096006 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1028 152 0 0 chr11 127687557 127687702 -23095851 - FRAM SINE Alu -36 140 1 184 404 10 10 chr11 127687746 127687845 -23095708 - L2 LINE L2 -650 2664 2566 835 283 38 8 chr11 127689266 127689506 -23094047 + MIR SINE MIR 3 249 -13 237 208 0 42 chr11 127689515 127689611 -23093942 + CT-rich Low_complexity Low_complexity 2 93 0 1353 175 77 35 chr11 127689970 127690255 -23093298 + AluJo SINE Alu 13 309 -3 238 392 122 0 chr11 127690356 127690504 -23093049 - L2 LINE L2 0 3272 3107 1826 138 30 0 chr11 127691587 127691855 -23091698 + AluJo SINE Alu 36 311 -1 27 0 0 0 chr11 127692036 127692063 -23091490 + AT_rich Low_complexity Low_complexity 1 27 0 208 197 30 0 chr11 127692065 127692131 -23091422 + (TA)n Simple_repeat Simple_repeat 2 69 0 339 316 96 19 chr11 127693682 127693857 -23089696 - MIR SINE MIR -40 168 6 192 313 119 37 chr11 127695042 127695176 -23088377 - L3b LINE CR1 -254 1329 1185 192 227 23 0 chr11 127695291 127695335 -23088218 + L2 LINE L2 3268 3312 -1 470 276 75 29 chr11 127695851 127696025 -23087528 - MIR SINE MIR -31 231 50 344 353 0 10 chr11 127696067 127696169 -23087384 - MIR SINE MIR -134 128 28 423 0 0 0 chr11 127696389 127696497 -23087056 + (CA)n Simple_repeat Simple_repeat 1 155 0 423 0 0 0 chr11 127696497 127696544 -23087009 + (CA)n Simple_repeat Simple_repeat 2 48 0 1767 193 0 20 chr11 127698814 127699120 -23084433 - AluJo SINE Alu -10 302 3 731 153 73 0 chr11 127699134 127699258 -23084295 - FLAM_C SINE Alu 0 133 1 272 327 67 10 chr11 127699258 127699362 -23084191 - L2 LINE L2 -10 3262 3153 544 275 65 65 chr11 127699644 127699844 -23083709 - MIR SINE MIR -15 247 48 1094 96 0 0 chr11 127699844 127699979 -23083574 + AluSq/x SINE Alu 1 135 -177 2348 105 10 0 chr11 127699979 127700284 -23083269 + AluSx SINE Alu 1 308 -4 341 281 45 0 chr11 127700347 127700436 -23083117 - MIR SINE MIR -48 214 122 1816 171 104 41 chr11 127700637 127701100 -23082453 + MLT1D LTR MaLR 2 493 -12 602 283 94 30 chr11 127701460 127701757 -23081796 - L2 LINE L2 -2 3311 2996 270 132 0 0 chr11 127701791 127701829 -23081724 + Alu SINE Alu 1 38 -264 2291 103 0 32 chr11 127701829 127702141 -23081412 + AluSx SINE Alu 7 308 -4 1326 321 74 30 chr11 127702166 127702926 -23080627 - L2 LINE L2 -358 2956 2164 4394 149 52 8 chr11 127702941 127703732 -23079821 + L1PA15 LINE L1 5339 6164 -1 805 196 0 0 chr11 127703748 127703881 -23079672 + FLAM_A SINE Alu 1 133 0 326 208 28 0 chr11 127703939 127704011 -23079542 + MLT1J1 LTR MaLR 68 141 -305 412 324 105 0 chr11 127704018 127704048 -23079505 + MLT1I LTR MaLR 170 195 -214 396 40 0 0 chr11 127704048 127704098 -23079455 + (TC)n Simple_repeat Simple_repeat 2 51 0 412 324 105 0 chr11 127704098 127704277 -23079276 + MLT1I LTR MaLR 195 401 -8 647 248 106 10 chr11 127704309 127704507 -23079046 + MIR SINE MIR 20 236 -26 924 333 81 25 chr11 127704532 127704744 -23078809 - L2 LINE L2 -1230 2084 1885 396 0 0 0 chr11 127704744 127704788 -23078765 + (TG)n Simple_repeat Simple_repeat 2 45 0 924 333 81 25 chr11 127704788 127705205 -23078348 - L2 LINE L2 -1429 1885 1420 262 167 83 17 chr11 127705836 127705896 -23077657 - MER91B DNA MER1_type -126 64 1 927 146 0 0 chr11 127706878 127707008 -23076545 + FLAM_C SINE Alu 1 130 -13 792 212 31 21 chr11 127708829 127709022 -23074531 - MER3 DNA MER1_type 0 209 15 757 162 0 17 chr11 127709028 127709188 -23074365 + FLAM_C SINE Alu 5 162 0 3363 154 17 41 chr11 127709430 127710084 -23073469 + L1MA9 LINE L1 5675 6312 0 204 333 42 0 chr11 127710152 127710224 -23073329 - L2 LINE L2 0 3272 3198 307 221 32 42 chr11 127710524 127710619 -23072934 + MIR3 SINE MIR 109 202 -6 3442 160 36 40 chr11 127711623 127711658 -23071895 - L1MB2 LINE L1 0 6171 6137 243 0 0 0 chr11 127711658 127711685 -23071868 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2012 120 22 0 chr11 127711685 127711961 -23071592 - AluSx SINE Alu -30 282 1 3442 160 36 40 chr11 127711961 127712623 -23070930 - L1MB2 LINE L1 -32 6139 5476 505 97 0 0 chr11 127712633 127712716 -23070837 - L1MB3 LINE L1 -294 5889 5818 499 182 29 23 chr11 127712933 127713068 -23070485 - L1MB2 LINE L1 -700 5471 5329 383 289 63 14 chr11 127713166 127713308 -23070245 + MIR SINE MIR 48 196 -66 367 308 46 0 chr11 127713801 127713931 -23069622 - L3b LINE CR1 -188 1395 1260 188 182 23 0 chr11 127714070 127714114 -23069439 + CT-rich Low_complexity Low_complexity 1 45 0 180 163 0 0 chr11 127714763 127714806 -23068747 + (CA)n Simple_repeat Simple_repeat 1 43 0 2319 101 3 0 chr11 127715388 127715684 -23067869 - AluSx SINE Alu -15 297 1 515 262 136 55 chr11 127716189 127716417 -23067136 - MIR SINE MIR -6 256 16 3682 143 1 41 chr11 127716807 127717465 -23066088 - L1PA16 LINE L1 -20 6146 5515 556 323 97 2 chr11 127717823 127718035 -23065518 - MIR SINE MIR -14 248 19 216 0 0 0 chr11 127718070 127718094 -23065459 + (T)n Simple_repeat Simple_repeat 1 24 0 473 259 21 135 chr11 127720595 127720867 -23062686 + L1ME3A LINE L1 5572 5768 -402 2290 123 3 0 chr11 127720867 127721176 -23062377 - AluSx SINE Alu -2 310 1 473 259 21 135 chr11 127721176 127721341 -23062212 + L1ME3A LINE L1 5768 5950 -220 416 35 17 0 chr11 127721632 127721690 -23061863 + (TG)n Simple_repeat Simple_repeat 2 60 0 1141 115 0 0 chr11 127721951 127722107 -23061446 + AluSg/x SINE Alu 157 312 0 2371 100 47 33 chr11 127722514 127722873 -23060680 + THE1B LTR MaLR 1 364 0 434 312 45 7 chr11 127723050 127723204 -23060349 + MIR SINE MIR 47 206 -56 758 278 95 53 chr11 127723699 127724152 -23059401 - MLT1J LTR MaLR -37 474 3 664 191 15 37 chr11 127724280 127724416 -23059137 + AluJ SINE Alu 2 134 -178 780 145 119 63 chr11 127724461 127724620 -23058933 + AluJ SINE Alu 126 293 -19 2005 161 14 11 chr11 127725371 127725726 -23057827 - MLT1A1 LTR MaLR 0 365 10 328 289 172 8 chr11 127726065 127726193 -23057360 - MIR SINE MIR -2 260 112 264 205 51 0 chr11 127726464 127726542 -23057011 - Charlie5 DNA MER1_type -35 2577 2496 * 1855 184 43 18 chr11 127726536 127726808 -23056745 - Charlie5 DNA MER1_type -2218 406 119 2446 47 7 10 chr11 127726808 127727105 -23056448 - AluY SINE Alu -15 296 1 1855 184 43 18 chr11 127727105 127727228 -23056325 - Charlie5 DNA MER1_type -2505 119 1 232 338 67 81 chr11 127727370 127727805 -23055748 - L2 LINE L2 -553 2761 2333 284 300 8 39 chr11 127727811 127727941 -23055612 + CT-rich Low_complexity Low_complexity 4 129 0 361 278 178 18 chr11 127728149 127728318 -23055235 - MIR SINE MIR -10 252 57 261 0 0 0 chr11 127728679 127728708 -23054845 + (A)n Simple_repeat Simple_repeat 1 29 0 475 283 0 14 chr11 127730443 127730581 -23052972 - MIR SINE MIR -95 167 32 410 337 30 50 chr11 127730794 127730996 -23052557 - MIR3 SINE MIR 0 208 11 2285 264 46 42 chr11 127731252 127731275 -23052278 + L1ME3A LINE L1 4732 4753 -1417 1120 163 93 0 chr11 127731275 127731490 -23052063 - MER46A DNA MER2_type 0 236 2 2285 264 46 42 chr11 127731490 127732717 -23050836 + L1ME3A LINE L1 4753 6120 -50 525 304 42 71 chr11 127732787 127733027 -23050526 - MIR SINE MIR -10 252 20 302 345 55 9 chr11 127733054 127733164 -23050389 + MIR SINE MIR 20 134 -128 202 228 18 18 chr11 127734841 127734898 -23048655 + CT-rich Low_complexity Low_complexity 2 58 0 234 0 0 0 chr11 127735767 127735793 -23047760 + (A)n Simple_repeat Simple_repeat 1 26 0 249 269 50 50 chr11 127736802 127736921 -23046632 + MIR SINE MIR 15 134 -74 356 332 68 32 chr11 127736974 127737164 -23046389 - MIR SINE MIR -65 197 1 242 288 76 59 chr11 127737177 127737295 -23046258 - MIR SINE MIR -56 206 87 213 351 0 0 chr11 127737349 127737426 -23046127 + MIR3 SINE MIR 131 207 -1 385 376 25 6 chr11 127738129 127738291 -23045262 - MIR SINE MIR -64 198 34 272 271 14 0 chr11 127738454 127738524 -23045029 + L2 LINE L2 3200 3270 -2 232 27 54 0 chr11 127739340 127739377 -23044176 + (CA)n Simple_repeat Simple_repeat 1 39 0 768 313 102 15 chr11 127740261 127740593 -23042960 - L3 LINE CR1 -37 1540 1180 259 352 22 0 chr11 127740841 127740932 -23042621 - MIR SINE MIR -111 151 59 568 262 10 79 chr11 127741352 127741554 -23041999 + MIR SINE MIR 1 188 -74 3209 190 42 30 chr11 127741574 127742310 -23041243 - L1ME1 LINE L1 -8 6158 5414 753 158 0 0 chr11 127742332 127742446 -23041107 - AluJb SINE Alu -194 118 5 1398 199 80 22 chr11 127742450 127742899 -23040654 - L1ME1 LINE L1 -743 5403 4958 927 170 58 19 chr11 127743220 127743563 -23039990 + MSTB1 LTR MaLR 1 432 0 221 380 19 28 chr11 127743608 127743716 -23039837 - L3b LINE CR1 -2 1581 1475 180 152 0 0 chr11 127744045 127744078 -23039475 + (CCA)n Simple_repeat Simple_repeat 2 34 0 555 245 129 0 chr11 127744078 127744233 -23039320 - MIR SINE MIR -4 258 84 355 328 55 27 chr11 127744388 127744571 -23038982 + MIR3 SINE MIR 21 208 0 839 191 0 6 chr11 127745177 127745355 -23038198 + GA-rich Low_complexity Low_complexity 3 179 0 230 299 23 23 chr11 127746007 127746094 -23037459 + MIR3 SINE MIR 116 202 -6 197 363 140 12 chr11 127746092 127746263 -23037290 + L3b LINE CR1 1367 1559 -24 * 232 309 0 0 chr11 127747962 127748017 -23035536 + (CATG)n Simple_repeat Simple_repeat 4 58 0 908 244 33 33 chr11 127748093 127748335 -23035218 + MIR SINE MIR 21 262 0 524 246 60 104 chr11 127748667 127748935 -23034618 - MIR SINE MIR 0 262 7 258 374 79 41 chr11 127749644 127750085 -23033468 - L2 LINE L2 -4 3268 2811 286 378 0 0 chr11 127750130 127750212 -23033341 - L2 LINE L2 -19 3253 3172 389 229 0 0 chr11 127750249 127750332 -23033221 - MER94 DNA DNA -51 83 1 181 81 27 27 chr11 127750570 127750593 -23032960 + (TC)n Simple_repeat Simple_repeat 2 27 -11 1755 151 17 10 chr11 127750593 127750892 -23032661 - AluJb SINE Alu -11 301 1 181 81 27 27 chr11 127750892 127750905 -23032648 + (TC)n Simple_repeat Simple_repeat 26 38 0 288 224 66 0 chr11 127751048 127751124 -23032429 + MIR SINE MIR 54 134 -74 981 165 0 0 chr11 127751124 127751294 -23032259 - FRAM SINE Alu -2 174 5 307 258 73 32 chr11 127751298 127751422 -23032131 + MIR SINE MIR 120 248 -14 2000 171 40 13 chr11 127752103 127752483 -23031070 - MLT1B LTR MaLR 0 390 1 2341 70 3 10 chr11 127753471 127753784 -23029769 - AluY SINE Alu 0 311 1 251 307 36 4 chr11 127753910 127754052 -23029501 - MIR SINE MIR -62 146 6 504 250 27 92 chr11 127754653 127754759 -23028794 - MIR3 SINE MIR -13 195 104 1557 181 0 29 chr11 127754759 127754931 -23028622 - AluJo SINE Alu -7 305 145 1994 109 10 39 chr11 127754931 127755242 -23028311 - AluSp SINE Alu -11 302 1 1557 181 0 29 chr11 127755242 127755383 -23028170 - AluJo SINE Alu -167 145 1 504 250 27 92 chr11 127755383 127755460 -23028093 - MIR3 SINE MIR -104 104 24 1266 234 115 54 chr11 127756547 127757157 -23026396 - L1ME4a LINE L1 -1 6120 5474 584 286 71 18 chr11 127757842 127758066 -23025487 - MIR SINE MIR -18 244 9 476 326 88 4 chr11 127759050 127759277 -23024276 - MIR SINE MIR -12 250 5 977 211 5 16 chr11 127760045 127760230 -23023323 + MER5A DNA MER1_type 2 184 -5 2211 114 0 0 chr11 127764673 127764980 -23018573 - AluSx SINE Alu -1 311 5 305 254 15 0 chr11 127765004 127765071 -23018482 - MIR SINE MIR -27 235 168 371 248 97 26 chr11 127765078 127765191 -23018362 - MER94 DNA DNA -1 133 13 328 234 139 66 chr11 127765191 127765328 -23018225 - MIR SINE MIR -114 148 2 945 118 42 0 chr11 127765661 127765805 -23017748 - L1PB1 LINE L1 0 6151 6002 2431 62 3 0 chr11 127765809 127766113 -23017440 - AluY SINE Alu -6 305 1 852 306 95 41 chr11 127767321 127767814 -23015739 - L3 LINE CR1 -75 1502 983 256 324 171 0 chr11 127768273 127768384 -23015169 + L2 LINE L2 3183 3312 -1 377 304 103 18 chr11 127768604 127768828 -23014725 + L2 LINE L2 948 1190 -2124 220 282 12 71 chr11 127769245 127769330 -23014223 - MIR3 SINE MIR -32 176 97 683 303 10 113 chr11 127771038 127771540 -23012013 - L2 LINE L2 -10 3262 2813 435 253 20 62 chr11 127771471 127771617 -23011936 + MER91A DNA MER1_type 21 160 -36 * 215 281 18 0 chr11 127771627 127771684 -23011869 + MER91A DNA MER1_type 133 190 0 460 333 25 21 chr11 127771684 127771927 -23011626 - L2 LINE L2 -432 2882 2639 287 278 33 22 chr11 127771930 127772020 -23011533 - L2 LINE L2 -934 2380 2290 2216 107 0 0 chr11 127772884 127773183 -23010370 + AluSc SINE Alu 1 299 -10 710 179 128 77 chr11 127773475 127773671 -23009882 - MIR SINE MIR -34 228 23 216 67 0 0 chr11 127774088 127774118 -23009435 + (TTA)n Simple_repeat Simple_repeat 2 31 0 906 177 29 126 chr11 127774125 127774435 -23009118 - AluYb8 SINE Alu -38 280 1 1982 101 7 4 chr11 127775560 127775863 -23007690 + AluSg SINE Alu 1 304 0 192 286 43 0 chr11 127780430 127780500 -23003053 - L2 LINE L2 -20 3293 3221 662 229 120 71 chr11 127781240 127781590 -23001963 + MLT1K LTR MaLR 200 566 -22 276 275 191 8 chr11 127781618 127781749 -23001804 - MIR SINE MIR -11 251 97 273 353 70 19 chr11 127782852 127783008 -23000545 - L3b LINE CR1 -126 1457 1294 276 338 0 0 chr11 127783038 127783118 -23000435 - MIR SINE MIR 0 262 183 1308 316 102 50 chr11 127783123 127784270 -22999283 + L2 LINE L2 1871 3073 -199 313 323 154 24 chr11 127785925 127786238 -22997315 + L2 LINE L2 2763 3113 -159 200 316 122 41 chr11 127786353 127786451 -22997102 + L2 LINE L2 3208 3313 0 5642 105 33 18 chr11 127786956 127787843 -22995710 - L1PB3 LINE L1 -1 6153 5254 212 329 0 26 chr11 127789078 127789154 -22994399 - MER5A DNA MER1_type -93 96 23 515 321 56 22 chr11 127789307 127789693 -22993860 - L2 LINE L2 -238 3034 2638 1883 131 3 39 chr11 127790594 127790730 -22992823 + AluSx SINE Alu 1 140 -172 2147 120 0 3 chr11 127790730 127791039 -22992514 + AluSg SINE Alu 1 308 -2 1883 131 3 39 chr11 127791039 127791214 -22992339 + AluSx SINE Alu 140 301 -11 500 285 142 70 chr11 127791263 127791750 -22991803 - MLT1K LTR MaLR 0 588 67 223 244 12 93 chr11 127792226 127792312 -22991241 + MIR SINE MIR 76 154 -108 332 334 2 21 chr11 127792891 127793065 -22990488 - MER5A DNA MER1_type -3 186 4 199 370 61 12 chr11 127793314 127793479 -22990074 + L2 LINE L2 2919 3091 -181 1880 119 0 77 chr11 127793649 127793985 -22989568 + AluJb SINE Alu 1 310 -2 323 279 45 45 chr11 127795046 127795157 -22988396 - MIR3 SINE MIR -28 180 70 481 285 29 15 chr11 127796863 127797000 -22986553 - MIR3 SINE MIR -10 198 60 403 355 0 19 chr11 127797668 127797823 -22985730 + MIR SINE MIR 15 166 -96 1788 152 30 7 chr11 127797930 127798232 -22985321 - AluJo SINE Alu -2 310 2 372 22 0 0 chr11 127798234 127798279 -22985274 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1846 214 51 9 chr11 127798318 127798767 -22984786 - L1MC3 LINE L1 -25 7760 7293 1695 202 67 82 chr11 127800312 127800870 -22982683 + MLT1E1 LTR MaLR 78 653 -1 330 352 44 6 chr11 127802608 127802767 -22980786 + MIR3 SINE MIR 32 196 -12 375 284 23 0 chr11 127803753 127803841 -22979712 + L1MC4 LINE L1 6614 6703 -1339 363 200 5 87 chr11 127803755 127803874 -22979679 - L1MC4 LINE L1 -1339 6983 2004 * 211 350 29 10 chr11 127804060 127804163 -22979390 + L2 LINE L2 2380 2484 -830 241 298 65 48 chr11 127804232 127804356 -22979197 - MIR SINE MIR -112 150 25 449 345 123 36 chr11 127804359 127804716 -22978837 - L2 LINE L2 0 3272 2885 303 252 0 0 chr11 127804919 127805062 -22978491 + (TG)n Simple_repeat Simple_repeat 1 143 0 249 250 0 0 chr11 127805084 127805144 -22978409 + (TG)n Simple_repeat Simple_repeat 1 60 0 244 311 58 69 chr11 127805158 127805418 -22978135 - L2 LINE L2 -674 2640 2384 240 282 92 53 chr11 127806504 127806635 -22976918 - MIR SINE MIR -14 248 113 1583 225 206 6 chr11 127806646 127807127 -22976426 + MLT1F1 LTR MaLR 4 567 0 348 255 9 28 chr11 127807996 127808102 -22975451 + MIR SINE MIR 116 219 -43 297 0 0 0 chr11 127808118 127808151 -22975402 + (TG)n Simple_repeat Simple_repeat 2 34 0 275 278 157 9 chr11 127808710 127808818 -22974735 - MIR3 SINE MIR -16 192 69 365 141 13 64 chr11 127810303 127810381 -22973172 - MIR SINE MIR 0 262 189 183 42 0 0 chr11 127811541 127811565 -22971988 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 228 333 0 0 chr11 127812308 127812374 -22971179 - MIR SINE MIR -110 152 87 1597 200 3 0 chr11 127812670 127812965 -22970588 - AluJb SINE Alu -16 296 1 2243 61 0 0 chr11 127813012 127813289 -22970264 + AluY SINE Alu 1 277 -34 670 68 0 19 chr11 127813289 127813392 -22970161 + (GAAA)n Simple_repeat Simple_repeat 4 104 0 275 278 157 9 chr11 127864163 127864271 -22919282 - MIR3 SINE MIR -16 192 69 365 141 13 64 chr11 127865756 127865834 -22917719 - MIR SINE MIR 0 262 189 183 42 0 0 chr11 127866994 127867018 -22916535 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 228 333 0 0 chr11 127867761 127867827 -22915726 - MIR SINE MIR -110 152 87 1600 198 3 0 chr11 127868123 127868416 -22915137 - AluJb SINE Alu -18 294 1 2243 61 0 0 chr11 127868463 127868740 -22914813 + AluY SINE Alu 1 277 -34 1102 46 0 13 chr11 127868740 127868891 -22914662 + (GAAA)n Simple_repeat Simple_repeat 4 152 0 1044 207 5 19 chr11 127870049 127870262 -22913291 + MER20 DNA MER1_type 10 219 0 509 293 155 6 chr11 127870325 127870499 -22913054 - MIR SINE MIR 0 262 63 299 300 164 59 chr11 127870838 127871525 -22912028 - L2 LINE L2 -44 3228 2470 316 335 32 26 chr11 127871530 127871685 -22911868 - L2 LINE L2 -963 2351 2196 309 331 60 43 chr11 127873318 127873620 -22909933 - L2 LINE L2 -457 2857 2551 2819 142 31 18 chr11 127873625 127874077 -22909476 + LTR32 LTR ERVL 14 471 0 248 256 11 44 chr11 127874810 127874900 -22908653 - L1MC4 LINE L1 -1339 6703 6617 2104 258 62 14 chr11 127874930 127875512 -22908041 - MLT2F LTR ERVL -53 610 1 750 306 33 16 chr11 127875703 127875948 -22907605 - MIR SINE MIR -2 260 12 234 338 0 0 chr11 127875959 127876030 -22907523 + L2 LINE L2 3202 3272 0 210 192 39 0 chr11 127876038 127876090 -22907463 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 330 313 85 81 chr11 127877328 127877588 -22905965 - L3b LINE CR1 -35 1548 1285 1146 185 5 9 chr11 127877588 127877799 -22905754 - MER63A DNA MER1_type 0 210 1 330 313 85 81 chr11 127877799 127877845 -22905708 - L3b LINE CR1 -298 1285 1241 194 314 181 19 chr11 127877913 127878018 -22905535 + L2 LINE L2 3150 3271 -1 534 278 38 79 chr11 127878366 127878632 -22904921 + MIR SINE MIR 8 262 0 350 261 133 14 chr11 127878635 127878750 -22904803 - MIR3 SINE MIR -45 163 34 277 254 39 77 chr11 127878754 127878884 -22904669 - MLT1I LTR MaLR -8 401 277 254 241 69 58 chr11 127879590 127879677 -22903876 + MIR SINE MIR 59 146 -62 469 191 71 160 chr11 127881806 127882031 -22901522 - MIR SINE MIR 0 262 58 2756 195 60 47 chr11 127882092 127882774 -22900779 - LTR8 LTR ERV1 0 691 1 479 298 30 25 chr11 127883113 127883311 -22900242 - L2 LINE L2 -241 3072 2874 219 397 99 7 chr11 127884288 127884439 -22899114 + MIR SINE MIR 84 248 -14 309 305 125 66 chr11 127884460 127884732 -22898821 - L2 LINE L2 -41 3231 2944 275 239 162 43 chr11 127885154 127885271 -22898282 - MIR SINE MIR -62 146 16 1759 156 17 0 chr11 127885288 127885589 -22897964 + AluJo SINE Alu 4 309 -3 203 343 59 29 chr11 127886515 127886617 -22896936 + L2 LINE L2 3161 3265 -48 * 1100 273 86 29 chr11 127886605 127887097 -22896456 + L2 LINE L2 2762 3280 -33 1903 139 70 25 chr11 127887097 127887456 -22896097 - THE1C LTR MaLR 0 375 1 1100 273 86 29 chr11 127887456 127887487 -22896066 + L2 LINE L2 3280 3308 -5 301 310 208 19 chr11 127888533 127888749 -22894804 - MIR SINE MIR 0 262 6 708 356 122 12 chr11 127888772 127889191 -22894362 + MER115 DNA AcHobo 1 465 -228 234 349 50 35 chr11 127889814 127890012 -22893541 + L2 LINE L2 2814 3014 -258 367 321 145 5 chr11 127890022 127890215 -22893338 + L3 LINE CR1 1162 1381 -196 1318 153 5 14 chr11 127890223 127890445 -22893108 + AluJb SINE Alu 88 307 -5 269 374 47 21 chr11 127890446 127890636 -22892917 + L3 LINE CR1 1371 1565 -12 1269 130 5 50 chr11 127890803 127891003 -22892550 + AluSx SINE Alu 1 191 -121 722 145 0 23 chr11 127891103 127891234 -22892319 + AluSx SINE Alu 182 309 -3 319 203 0 14 chr11 127891411 127891485 -22892068 - L1ME4a LINE L1 -79 6042 5970 348 286 18 0 chr11 127893104 127893216 -22890337 - MER117 DNA MER1_type -37 160 47 837 280 35 37 chr11 127893704 127894118 -22889435 + L1MEc LINE L1 904 1318 -4992 2126 147 0 0 chr11 127894118 127894411 -22889142 - AluSq SINE Alu -20 293 1 837 280 35 37 chr11 127894411 127894615 -22888938 + L1MEc LINE L1 1318 1562 -4748 2159 107 0 0 chr11 127894615 127894917 -22888636 - AluY SINE Alu 0 305 4 837 280 35 37 chr11 127894917 127895053 -22888500 + L1MEc LINE L1 1562 1697 -4613 6739 231 62 46 chr11 127895825 127898523 -22885030 - L1M4 LINE L1 -1112 5034 2294 2239 118 0 3 chr11 127898527 127898841 -22884712 - AluSq SINE Alu 0 313 1 311 293 47 56 chr11 127898877 127899003 -22884550 + L1M4 LINE L1 3926 4051 -2095 1695 190 3 7 chr11 127899003 127899303 -22884250 - AluJb SINE Alu -13 299 1 311 293 47 56 chr11 127899303 127899391 -22884162 + L1M4 LINE L1 4051 4138 -2008 596 261 93 25 chr11 127899625 127899905 -22883648 + L1M4 LINE L1 4733 5031 -1115 849 251 41 41 chr11 127899924 127900243 -22883310 + L1MD2 LINE L1 27 345 -6195 4063 226 69 33 chr11 127900655 127902041 -22881512 + L1MD2 LINE L1 791 2126 -4414 1592 166 0 12 chr11 127902041 127902300 -22881253 + AluSx SINE Alu 38 293 -19 4063 226 69 33 chr11 127902300 127902453 -22881100 + L1MD2 LINE L1 2126 2272 -4268 2308 103 0 13 chr11 127902453 127902765 -22880788 + AluSc SINE Alu 1 308 -1 4063 226 69 33 chr11 127902765 127902952 -22880601 + L1MD2 LINE L1 2272 2451 -4089 2392 57 10 3 chr11 127902952 127903248 -22880305 + AluY SINE Alu 1 298 -13 4063 226 69 33 chr11 127903248 127903850 -22879703 + L1MD2 LINE L1 2451 3167 -3373 1506 162 32 0 chr11 127903905 127904189 -22879364 + L1MB3 LINE L1 5833 6125 -58 351 123 0 0 chr11 127905789 127905854 -22877699 + L1MB4 LINE L1 6114 6178 -2 5750 221 47 41 chr11 127905854 127908022 -22875531 + L1MD2 LINE L1 3529 5684 -2705 2207 118 0 3 chr11 127908022 127908327 -22875226 + AluSx SINE Alu 1 304 -8 5750 221 47 41 chr11 127908327 127909350 -22874203 + L1MD2 LINE L1 5684 8387 -2 737 251 122 62 chr11 127909601 127910121 -22873432 - L2 LINE L2 0 3313 2766 860 193 23 18 chr11 127910140 127910311 -22873242 + MER5A DNA MER1_type 17 188 -1 578 228 161 10 chr11 127910311 127910501 -22873052 - L2 LINE L2 -547 2767 2549 2319 64 0 3 chr11 127910545 127910852 -22872701 - AluY SINE Alu 0 306 1 982 67 7 30 chr11 127910861 127910996 -22872557 - AluY SINE Alu -179 132 1 357 358 20 0 chr11 127911916 127912064 -22871489 + MER117 DNA MER1_type 14 164 -33 6676 40 1 1 chr11 127912598 127913449 -22870104 + L1PA5 LINE L1 5298 6145 -9 1697 183 3 10 chr11 127914529 127914835 -22868718 - AluJo SINE Alu -8 304 1 285 197 0 0 chr11 127915937 127915998 -22867555 + GA-rich Low_complexity Low_complexity 4 64 0 401 320 17 50 chr11 127916263 127916444 -22867109 - ERVL LTR ERVL -395 5369 5195 326 318 0 0 chr11 127916580 127916690 -22866863 - ERVL LTR ERVL -673 4981 4872 650 254 216 0 chr11 127916700 127916913 -22866640 + MIR SINE MIR 3 261 -1 772 289 59 37 chr11 127917057 127917545 -22866008 - ERVL LTR ERVL -763 4722 4224 1819 259 55 36 chr11 127917718 127918332 -22865221 - MLT1E2 LTR MaLR 0 626 1 1046 309 85 58 chr11 127918563 127919458 -22864095 - ERVL LTR ERVL -3075 2689 1771 585 327 45 18 chr11 127919580 127919910 -22863643 + MLT1I LTR MaLR 71 409 0 305 308 35 6 chr11 127920429 127920598 -22862955 - ERVL LTR ERVL -4628 1136 963 868 226 86 5 chr11 127921328 127921549 -22862004 - MIR SINE MIR -22 240 2 247 135 0 0 chr11 127922793 127922830 -22860723 - tRNA-Val-GTG tRNA tRNA -38 38 2 22 56 0 0 chr11 127923589 127923625 -22859928 + AT_rich Low_complexity Low_complexity 1 36 0 239 282 48 0 chr11 127923774 127923877 -22859676 + HAL1 LINE L1 1213 1320 -1187 1941 133 29 26 chr11 127923890 127924199 -22859354 + AluSg SINE Alu 1 310 0 329 292 52 34 chr11 127924379 127924612 -22858941 + L1MEc LINE L1 203 439 -6124 2508 207 78 38 chr11 127925048 127926224 -22857329 - L1ME2 LINE L1 -10 6223 4894 556 282 78 89 chr11 127926217 127927011 -22856542 - L1ME2 LINE L1 -5334 1062 278 * 263 130 19 0 chr11 127927011 127927065 -22856488 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 748 298 48 27 chr11 127927116 127927768 -22855785 + L1MEc LINE L1 1218 1854 -4709 2239 105 0 0 chr11 127927768 127928054 -22855499 + AluSg SINE Alu 1 286 -24 180 111 0 0 chr11 127928054 127928081 -22855472 + (TA)n Simple_repeat Simple_repeat 2 28 0 748 298 48 27 chr11 127928081 127928233 -22855320 + L1MEc LINE L1 1853 2229 -4334 25 31 0 0 chr11 127928233 127928265 -22855288 + AT_rich Low_complexity Low_complexity 1 32 0 2774 252 82 38 chr11 127928417 127929297 -22854256 + L1MEc LINE L1 2383 3223 -3159 997 47 78 0 chr11 127929297 127929425 -22854128 - MER85 DNA T2_type -1 138 1 2774 252 82 38 chr11 127929425 127930241 -22853312 + L1MEc LINE L1 3223 4154 -2228 7638 26 0 2 chr11 127930251 127931423 -22852130 - L1PA3 LINE L1 -4 6151 4981 2040 203 57 0 chr11 127931529 127932117 -22851436 - L1 LINE L1 -3401 3447 2778 12408 181 33 15 chr11 127932117 127932605 -22850948 - L1 LINE L1 -4383 2466 1988 180 0 0 0 chr11 127932605 127932625 -22850928 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 12408 181 33 15 chr11 127932625 127934557 -22848996 - L1 LINE L1 -4861 1988 3 233 167 0 37 chr11 127934639 127934693 -22848860 - L1MC4 LINE L1 -1339 6703 6652 231 189 0 0 chr11 127934799 127934852 -22848701 + (TATATG)n Simple_repeat Simple_repeat 3 55 0 243 311 14 14 chr11 127935068 127935142 -22848411 - MIR SINE MIR -10 252 179 204 40 0 0 chr11 127937361 127937386 -22846167 + (TG)n Simple_repeat Simple_repeat 1 25 0 350 289 29 10 chr11 127937393 127937497 -22846056 - MIR SINE MIR -71 191 86 1042 269 38 65 chr11 127937963 127938443 -22845110 - L1ME3A LINE L1 -8 6162 5696 1065 134 0 24 chr11 127938457 127938621 -22844932 - AluSg/x SINE Alu -16 294 135 1514 259 95 46 chr11 127938623 127940388 -22843165 - L1ME3A LINE L1 -471 5691 3852 7270 32 0 1 chr11 127940391 127941728 -22841825 - L1PA4 LINE L1 0 6155 4820 3511 251 57 42 chr11 127941730 127943009 -22840544 + L1ME3 LINE L1 3921 5257 -905 1987 119 7 0 chr11 127943009 127943278 -22840275 + AluSx SINE Alu 38 308 -4 3511 251 57 42 chr11 127943278 127944189 -22839364 + L1ME3 LINE L1 5257 6152 -10 482 230 27 124 chr11 127944261 127944518 -22839035 + HAL1 LINE L1 1424 1655 -852 609 200 29 67 chr11 127944858 127945068 -22838485 + HAL1b LINE L1 733 934 -414 1692 144 15 90 chr11 127945262 127945489 -22838064 - MER7A DNA MER2_type -2730 308 114 734 148 62 23 chr11 127945489 127945617 -22837936 + FLAM_C SINE Alu 1 133 0 1692 144 15 90 chr11 127945617 127945723 -22837830 - MER7A DNA MER2_type -2924 114 2 233 231 39 26 chr11 127946521 127946599 -22836954 + L1MC/D LINE L1 5768 5846 -1962 14587 171 25 25 chr11 127946618 127949463 -22834090 - L1MA4A LINE L1 -5 7000 4101 6796 94 6 2 chr11 127949463 127950738 -22832815 - L1PA10 LINE L1 -3 6165 4890 14587 171 25 25 chr11 127950738 127952062 -22831491 - L1MA4A LINE L1 -2904 4101 2778 13372 182 32 15 chr11 127952062 127952551 -22831002 - L1MA4A LINE L1 -4383 2466 1987 180 0 0 0 chr11 127952551 127952571 -22830982 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 13372 182 32 15 chr11 127952571 127954503 -22829050 - L1MA4A LINE L1 -4862 1987 3 252 185 0 37 chr11 127954585 127954639 -22828914 - L1MC4 LINE L1 -1339 6703 6652 21 36 0 0 chr11 127954690 127954718 -22828835 + AT_rich Low_complexity Low_complexity 1 28 0 189 196 0 0 chr11 127954745 127954791 -22828762 + (TATATG)n Simple_repeat Simple_repeat 4 49 0 303 233 0 0 chr11 127954791 127954851 -22828702 - L1MC4 LINE L1 -1339 6703 6644 209 306 42 14 chr11 127955055 127955127 -22828426 - MIR SINE MIR -10 252 179 222 37 0 0 chr11 127957346 127957373 -22826180 + (TG)n Simple_repeat Simple_repeat 1 27 0 351 289 29 10 chr11 127957380 127957484 -22826069 - MIR SINE MIR -71 191 86 1242 266 36 69 chr11 127957950 127958443 -22825110 - L1ME3A LINE L1 -8 6162 5686 1090 128 0 24 chr11 127958444 127958608 -22824945 - AluSg/x SINE Alu -16 296 137 2277 250 91 36 chr11 127958609 127960361 -22823192 - L1ME3A LINE L1 -471 5691 3850 28920 31 1 2 chr11 127960362 127964563 -22818990 - L1PA4 LINE L1 0 6155 1959 3733 86 29 0 chr11 127964563 127965054 -22818499 - L1PA4 LINE L1 -5635 511 7 2333 106 0 0 chr11 127965074 127965385 -22818168 - AluY SINE Alu 0 311 1 1303 262 84 37 chr11 127965385 127965706 -22817847 - L1ME3A LINE L1 -2286 3860 3500 216 97 0 0 chr11 127965706 127965737 -22817816 + (TG)n Simple_repeat Simple_repeat 1 31 0 1303 262 84 37 chr11 127965737 127965977 -22817576 - L1ME3A LINE L1 -2646 3500 3273 888 172 137 10 chr11 127966230 127966434 -22817119 - L1ME3A LINE L1 -1 6169 5940 1880 255 42 20 chr11 127966443 127967032 -22816521 - L1ME3A LINE L1 -278 5892 5291 317 202 106 11 chr11 127967019 127967113 -22816440 - L1ME4a LINE L1 -1 6120 6018 * 237 350 0 0 chr11 127968080 127968140 -22815413 + L2 LINE L2 3238 3297 -16 739 269 72 24 chr11 127968184 127968392 -22815161 - MIR SINE MIR -6 256 39 216 236 18 0 chr11 127968440 127968495 -22815058 + (TAA)n Simple_repeat Simple_repeat 1 56 0 374 330 33 4 chr11 127968527 127968710 -22814843 - MIR3 SINE MIR -50 212 30 21 0 0 0 chr11 127968929 127968950 -22814603 + AT_rich Low_complexity Low_complexity 1 21 0 299 210 0 0 chr11 127970602 127970664 -22812889 - MIR SINE MIR 0 262 201 303 287 30 112 chr11 127971965 127972401 -22811152 + L2 LINE L2 2540 2939 -375 * 399 314 142 40 chr11 127972322 127972746 -22810807 - L2 LINE L2 -36 3277 2811 728 246 107 83 chr11 127972797 127973365 -22810188 + HAL1 LINE L1 610 1191 -1316 429 292 24 21 chr11 127973374 127973572 -22809981 - MIR3 SINE MIR -49 213 13 981 158 0 0 chr11 127974659 127974836 -22808717 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 328 303 38 30 chr11 127975174 127975306 -22808247 + MIR3 SINE MIR 44 176 -32 262 342 0 53 chr11 127975991 127976105 -22807448 + MIR SINE MIR 81 188 -74 261 338 94 12 chr11 127977235 127977395 -22806158 - MIR3 SINE MIR -7 201 29 282 319 52 26 chr11 127978548 127978664 -22804889 - MIR3 SINE MIR -45 163 45 806 174 6 0 chr11 127979011 127979178 -22804375 + (TCCA)n Simple_repeat Simple_repeat 4 171 0 302 300 25 65 chr11 127979924 127980124 -22803429 - L3b LINE CR1 -177 1406 1215 227 79 26 0 chr11 127980126 127980164 -22803389 + (TC)n Simple_repeat Simple_repeat 2 40 0 1235 254 78 92 chr11 127980869 127981423 -22802130 + MLT1H LTR MaLR 4 549 0 218 339 0 0 chr11 127981502 127981561 -22801992 + L2 LINE L2 2793 2851 -463 231 277 170 0 chr11 127981867 127981979 -22801574 - MER5B DNA MER1_type -46 132 2 441 0 0 0 chr11 127982009 127982058 -22801495 + (TG)n Simple_repeat Simple_repeat 2 50 0 270 387 83 0 chr11 127982706 127982874 -22800679 + L2 LINE L2 3089 3270 -2 463 315 55 51 chr11 127983424 127983659 -22799894 + MIR SINE MIR 1 236 -26 189 306 0 0 chr11 127983685 127983734 -22799819 - L2 LINE L2 -10 3262 3214 237 83 0 0 chr11 127984645 127984681 -22798872 + (TG)n Simple_repeat Simple_repeat 2 37 0 379 302 203 0 chr11 127985041 127985243 -22798310 + MIR SINE MIR 20 262 0 236 340 112 37 chr11 127985296 127985475 -22798078 + MIR SINE MIR 21 212 -50 183 297 72 36 chr11 127985519 127985630 -22797923 - L3 LINE CR1 -67 1510 1396 22 0 0 0 chr11 127985647 127985669 -22797884 + AT_rich Low_complexity Low_complexity 1 22 0 236 267 40 13 chr11 127985875 127985950 -22797603 - L3 LINE CR1 -191 1386 1310 256 162 135 40 chr11 127986158 127986232 -22797321 - MLT1J1 LTR MaLR -9 437 357 491 296 59 24 chr11 127986324 127986493 -22797060 - MLT1J2 LTR MaLR -211 239 65 1206 270 62 25 chr11 127987388 127987788 -22795765 - L3 LINE CR1 -489 1088 674 1602 249 123 35 chr11 127988074 127988999 -22794554 + L2 LINE L2 2313 3311 -2 188 333 13 27 chr11 127989458 127989533 -22794020 + L3b LINE CR1 1504 1577 -6 232 297 99 55 chr11 127990756 127990847 -22792706 + L2 LINE L2 3158 3252 -20 306 240 41 89 chr11 127990940 127991086 -22792467 + MIR SINE MIR 60 198 -64 320 344 52 32 chr11 127991214 127991368 -22792185 - L2 LINE L2 0 3272 3116 190 219 151 55 chr11 127992250 127992323 -22791230 + L2 LINE L2 3225 3304 -9 603 246 22 0 chr11 127992415 127992549 -22791004 + L2 LINE L2 3175 3311 -2 287 146 18 0 chr11 127992658 127992713 -22790840 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 257 159 43 72 chr11 127992871 127992940 -22790613 + L3 LINE CR1 1510 1576 -1 264 371 0 0 chr11 127993475 127993564 -22789989 - MIR SINE MIR -60 148 60 186 377 14 14 chr11 127994106 127994175 -22789378 + MIR SINE MIR 36 104 -104 192 344 0 0 chr11 127994454 127994518 -22789035 + L3 LINE CR1 1308 1371 -206 337 273 10 10 chr11 127994529 127994628 -22788925 - MIR SINE MIR 0 262 164 355 292 168 25 chr11 127994649 127994662 -22788891 - L2 LINE L2 0 3313 3303 1483 196 7 0 chr11 127994662 127994943 -22788610 - AluJb SINE Alu -27 285 3 355 292 168 25 chr11 127994943 127995203 -22788350 - L2 LINE L2 -10 3303 3001 371 298 44 26 chr11 127996413 127996527 -22787026 + L2 LINE L2 3156 3271 -1 2291 121 12 18 chr11 127997554 127997893 -22785660 + MER1B DNA MER1_type 1 337 0 743 178 0 22 chr11 127997924 127998059 -22785494 + FLAM_C SINE Alu 2 133 0 789 297 50 33 chr11 127998059 127998601 -22784952 + L1M4 LINE L1 4764 5314 -832 308 24 0 24 chr11 128000004 128000056 -22783497 + (TCC)n Simple_repeat Simple_repeat 1 91 0 308 24 0 24 chr11 128000056 128000098 -22783455 + (TCC)n Simple_repeat Simple_repeat 1 41 0 353 69 0 17 chr11 128000924 128000982 -22782571 + (TC)n Simple_repeat Simple_repeat 1 57 0 299 326 108 16 chr11 128001017 128001146 -22782407 - L2 LINE L2 -14 3258 3118 522 226 177 18 chr11 128004350 128004514 -22779039 - MIR SINE MIR -40 222 33 300 333 10 0 chr11 128004514 128004613 -22778940 - L3 LINE CR1 -82 1495 1396 404 283 9 18 chr11 128005325 128005438 -22778115 + MIR SINE MIR 21 132 -130 404 234 64 0 chr11 128006333 128006427 -22777126 + L2 LINE L2 3210 3309 -4 436 330 22 16 chr11 128007625 128007810 -22775743 - MIR SINE MIR -7 255 70 644 314 11 11 chr11 128007827 128008015 -22775538 + MIR SINE MIR 75 262 0 1573 191 0 0 chr11 128008039 128008317 -22775236 - AluJb SINE Alu -28 284 7 620 305 116 4 chr11 128008378 128008611 -22774942 - MIR SINE MIR 0 262 4 225 263 18 0 chr11 128008780 128008837 -22774716 + CT-rich Low_complexity Low_complexity 4 61 0 197 355 0 0 chr11 128009027 128009089 -22774464 + L3 LINE CR1 1425 1486 -91 324 301 0 12 chr11 128009132 128009215 -22774338 + L3 LINE CR1 1425 1506 -71 2037 103 81 39 chr11 128010028 128010388 -22773165 + THE1C LTR MaLR 1 375 0 271 286 0 48 chr11 128012462 128012546 -22771007 + MIR SINE MIR 77 156 -106 616 293 57 0 chr11 128012546 128012792 -22770761 - MIR SINE MIR 0 262 3 762 313 109 29 chr11 128012851 128013365 -22770188 + MLT1H1 LTR MaLR 1 555 0 271 300 6 47 chr11 128013945 128014044 -22769509 + GA-rich Low_complexity Low_complexity 4 95 -71 180 0 0 0 chr11 128014044 128014064 -22769489 + (GA)n Simple_repeat Simple_repeat 1 20 0 271 300 6 47 chr11 128014064 128014134 -22769419 + GA-rich Low_complexity Low_complexity 95 166 0 284 275 0 0 chr11 128015762 128015831 -22767722 + MIR SINE MIR 72 140 -122 953 213 14 46 chr11 128015882 128016098 -22767455 - MER63A DNA MER1_type -1 209 1 213 319 0 29 chr11 128017071 128017140 -22766413 + L2 LINE L2 3247 3313 0 207 267 0 0 chr11 128018293 128018338 -22765215 + CT-rich Low_complexity Low_complexity 3 47 0 589 307 110 18 chr11 128019333 128019659 -22763894 + LTR16C LTR ERVL 126 481 -10 304 348 192 9 chr11 128019663 128020111 -22763442 - L2 LINE L2 -993 2321 1792 249 342 125 16 chr11 128020613 128020797 -22762756 + MIR SINE MIR 53 256 -6 1818 160 91 25 chr11 128021046 128021409 -22762144 + MLT1B LTR MaLR 4 390 0 292 161 18 0 chr11 128022532 128022588 -22760965 + L2 LINE L2 3206 3262 -10 182 206 0 0 chr11 128022604 128022638 -22760915 - L3b LINE CR1 -185 1398 1365 26 0 0 0 chr11 128024135 128024161 -22759392 + AT_rich Low_complexity Low_complexity 1 26 0 1299 265 110 34 chr11 128024181 128024683 -22758870 - L1ME3A LINE L1 -76 6094 5555 288 77 0 0 chr11 128025277 128025316 -22758237 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 366 257 10 0 chr11 128026098 128026195 -22757358 - MIR3 SINE MIR -39 169 71 269 298 88 9 chr11 128026820 128026934 -22756619 + MIR SINE MIR 21 143 -65 315 197 4 0 chr11 128027146 128027215 -22756338 - L1MC4 LINE L1 -1343 6979 1996 323 235 39 69 chr11 128027275 128027377 -22756176 - L1MC4 LINE L1 -1333 6709 6611 267 194 56 0 chr11 128027415 128027523 -22756030 + (TA)n Simple_repeat Simple_repeat 1 114 0 186 185 200 15 chr11 128029004 128029069 -22754484 - MIR SINE MIR -50 212 136 514 305 153 9 chr11 128029073 128029296 -22754257 + MIR SINE MIR 2 256 -6 361 235 41 20 chr11 128029286 128029384 -22754169 - MIR SINE MIR -106 156 57 * 831 337 124 35 chr11 128029383 128030669 -22752884 - L2 LINE L2 -1 3271 1864 1907 161 7 0 chr11 128030720 128031030 -22752523 + AluSx SINE Alu 1 312 0 595 99 20 10 chr11 128031033 128031134 -22752419 + (GGAA)n Simple_repeat Simple_repeat 3 104 0 744 99 0 0 chr11 128031218 128031329 -22752224 + (CTATT)n Simple_repeat Simple_repeat 1 111 0 409 207 0 12 chr11 128031329 128031411 -22752142 + MER112 DNA MER1_type 180 260 0 467 292 47 55 chr11 128031450 128031686 -22751867 + MIR SINE MIR 3 236 -26 199 312 113 71 chr11 128032167 128032308 -22751245 - L2 LINE L2 -5 3267 3121 196 401 64 0 chr11 128032690 128032847 -22750706 - L2 LINE L2 -618 2696 2530 223 332 59 37 chr11 128033050 128033237 -22750316 - L2 LINE L2 -182 3090 2900 * 432 377 18 6 chr11 128033236 128033403 -22750150 + MIR SINE MIR 17 185 -77 811 209 45 13 chr11 128033445 128033698 -22749855 - L1MCa LINE L1 -4181 2246 1644 750 208 39 0 chr11 128034627 128034805 -22748748 - L1M2 LINE L1 -4386 2721 2537 213 94 0 0 chr11 128034806 128034838 -22748715 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3588 227 54 42 chr11 128035299 128036596 -22746957 - L1M2 LINE L1 -4632 2405 1081 1640 162 38 58 chr11 128036599 128036944 -22746609 - L1M2 LINE L1 -6692 338 1 248 253 139 0 chr11 128036949 128037028 -22746525 + MIR SINE MIR 173 262 0 243 322 66 47 chr11 128037113 128037324 -22746229 - L2 LINE L2 -480 2834 2620 732 239 116 77 chr11 128037639 128038104 -22745449 + MLT1J LTR MaLR 6 444 -2 270 275 26 117 chr11 128038135 128038553 -22745000 - L2 LINE L2 -1003 2311 1932 3212 183 20 45 chr11 128038726 128039421 -22744132 + L1MD3 LINE L1 7318 7995 0 665 245 156 5 chr11 128039996 128040188 -22743365 + MIR SINE MIR 24 244 -18 394 312 7 36 chr11 128040248 128040386 -22743167 + MIR SINE MIR 16 149 -59 203 294 0 0 chr11 128040445 128040496 -22743057 + C-rich Low_complexity Low_complexity 1 51 0 475 289 64 32 chr11 128041283 128041470 -22742083 - MIR3 SINE MIR -13 195 3 210 287 64 21 chr11 128041766 128041860 -22741693 + MIR SINE MIR 105 202 -60 805 189 19 0 chr11 128041874 128042136 -22741417 + CT-rich Low_complexity Low_complexity 1 267 0 269 299 0 13 chr11 128043261 128043338 -22740215 + MIR SINE MIR 76 151 -57 2520 143 30 37 chr11 128043754 128044189 -22739364 - Tigger2a DNA MER2_type -1 433 2 273 57 0 0 chr11 128044190 128044225 -22739328 + (TG)n Simple_repeat Simple_repeat 2 36 0 334 303 173 0 chr11 128044434 128044596 -22738957 - MIR SINE MIR 0 262 73 394 269 103 34 chr11 128047665 128047840 -22735713 - MIR SINE MIR -56 206 20 271 310 160 0 chr11 128047902 128048002 -22735551 - L2 LINE L2 -10 3262 3147 1693 121 72 75 chr11 128048610 128048916 -22734637 - MER1B DNA MER1_type 0 339 35 267 346 9 9 chr11 128049433 128049540 -22734013 - MIR3 SINE MIR -53 155 49 280 337 41 0 chr11 128050339 128050437 -22733116 + MIR SINE MIR 44 145 -63 652 66 38 85 chr11 128050607 128050713 -22732840 + MER30 DNA MER1_type 2 102 -128 45115 38 1 5 chr11 128050715 128056898 -22726655 + L1PA4 LINE L1 1 6155 0 21 0 0 0 chr11 128056898 128056919 -22726634 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr11 128056952 128056978 -22726575 + AT_rich Low_complexity Low_complexity 1 26 0 753 156 0 0 chr11 128056991 128057100 -22726453 + MER30 DNA MER1_type 122 230 0 286 303 46 9 chr11 128058267 128058376 -22725177 - MIR SINE MIR -142 120 8 209 179 0 0 chr11 128058376 128058415 -22725138 + (CAT)n Simple_repeat Simple_repeat 3 41 0 186 182 0 0 chr11 128058600 128058633 -22724920 + MIR SINE MIR 116 148 -60 351 0 0 0 chr11 128059617 128059656 -22723897 + (TG)n Simple_repeat Simple_repeat 1 39 0 262 242 84 32 chr11 128059980 128060075 -22723478 - MIR SINE MIR -74 188 89 181 154 0 26 chr11 128060350 128060389 -22723164 - L2 LINE L2 -28 3244 3207 216 290 14 0 chr11 128060419 128060488 -22723065 - MIR SINE MIR -147 115 46 511 268 98 6 chr11 128060805 128060988 -22722565 - MIR SINE MIR -13 249 50 905 285 8 0 chr11 128061259 128061508 -22722045 + MIR SINE MIR 12 262 0 184 303 15 61 chr11 128061529 128061595 -22721958 - L3 LINE CR1 -1 1576 1514 415 291 0 70 chr11 128061612 128061784 -22721769 + MIR SINE MIR 32 191 -71 2289 213 48 38 chr11 128063199 128063799 -22719754 - L1ME3 LINE L1 -1 6161 5556 296 316 44 0 chr11 128063818 128063932 -22719621 - L2 LINE L2 -5 3267 3149 248 250 0 16 chr11 128065175 128065239 -22718314 + MIR SINE MIR 91 153 -55 23 0 0 0 chr11 128065378 128065401 -22718152 + AT_rich Low_complexity Low_complexity 1 23 0 224 383 9 0 chr11 128065434 128065541 -22718012 - L2 LINE L2 -1 3312 3205 204 40 0 0 chr11 128068302 128068327 -22715226 + (TTG)n Simple_repeat Simple_repeat 2 26 0 195 279 154 44 chr11 128068760 128068850 -22714703 + MIR SINE MIR 47 158 -104 1785 209 22 3 chr11 128068850 128069208 -22714345 + MLT1A1 LTR MaLR 1 365 0 195 279 154 44 chr11 128069208 128069253 -22714300 + MIR SINE MIR 158 197 -65 597 234 107 42 chr11 128069680 128069970 -22713583 - MLT1I LTR MaLR 0 549 80 2161 118 3 0 chr11 128070022 128070319 -22713234 - AluSc SINE Alu -11 298 1 317 266 14 70 chr11 128072095 128072238 -22711315 - MIR SINE MIR -71 191 57 1755 162 43 13 chr11 128072386 128072689 -22710864 - AluSx SINE Alu 0 312 1 416 275 107 89 chr11 128074580 128074765 -22708788 - MER102a DNA MER1_type -1095 322 129 2333 92 0 0 chr11 128074765 128075060 -22708493 - AluSg1 SINE Alu -14 295 1 416 275 107 89 chr11 128075060 128075154 -22708399 - MER102a DNA MER1_type -1288 129 38 353 262 56 121 chr11 128075788 128076292 -22707261 - MLT1K LTR MaLR -14 574 104 265 252 60 80 chr11 128076421 128076572 -22706981 - MIR SINE MIR -66 196 49 334 159 0 29 chr11 128077975 128078044 -22705509 - L2 LINE L2 -3 3269 3203 387 293 134 40 chr11 128078158 128078479 -22705074 - L2 LINE L2 0 3313 2963 992 228 15 0 chr11 128078484 128078686 -22704867 + MER63A DNA MER1_type 1 205 -5 372 43 0 0 chr11 128078979 128079025 -22704528 + (TG)n Simple_repeat Simple_repeat 1 46 0 211 290 58 0 chr11 128079039 128079108 -22704445 - L2 LINE L2 -57 3256 3184 535 267 158 50 chr11 128081102 128081405 -22702148 - L3 LINE CR1 -62 1515 1180 351 310 31 8 chr11 128081780 128081909 -22701644 - L2 LINE L2 0 3272 3141 683 267 27 16 chr11 128082230 128082417 -22701136 + MER63A DNA MER1_type 1 189 -21 444 243 27 65 chr11 128082624 128082809 -22700744 - MER5B DNA MER1_type 0 178 1 840 244 45 12 chr11 128083217 128083459 -22700094 - MIR SINE MIR -1 261 12 267 315 103 76 chr11 128083518 128083973 -22699580 - L2 LINE L2 -815 2499 2021 3157 221 80 29 chr11 128083973 128084794 -22698759 - MER21B LTR ERV1 0 863 1 267 315 103 76 chr11 128084794 128084957 -22698596 - L2 LINE L2 -1293 2021 1864 3687 244 62 18 chr11 128086853 128088526 -22695027 - L1ME1 LINE L1 -285 5881 4158 830 159 0 0 chr11 128088550 128088695 -22694858 - L1MB5 LINE L1 -1 6173 6029 44463 43 4 1 chr11 128088709 128094838 -22688715 + L1PA4 LINE L1 12 6155 0 2896 198 34 26 chr11 128094866 128095522 -22688031 - L1MB5 LINE L1 -141 6033 5373 4409 168 53 16 chr11 128095546 128096464 -22687089 - L1MA9 LINE L1 -4 6308 5357 911 256 82 22 chr11 128096474 128096830 -22686723 - L1ME1 LINE L1 -4 6162 5786 25 0 0 0 chr11 128096852 128096877 -22686676 + AT_rich Low_complexity Low_complexity 1 25 0 1319 204 22 0 chr11 128096877 128097280 -22686273 - L1MA9 LINE L1 -22 7709 7202 250 121 71 10 chr11 128097288 128097387 -22686166 + (TA)n Simple_repeat Simple_repeat 1 105 0 11743 212 33 29 chr11 128097399 128101638 -22681915 - L1MA9 LINE L1 -521 7210 2934 2032 211 52 40 chr11 128101655 128102248 -22681305 - L1MA9 LINE L1 -44 6268 5669 1725 125 7 25 chr11 128102250 128102530 -22681023 - MSTA LTR MaLR 0 428 154 1058 228 69 7 chr11 128102690 128103005 -22680548 - MLT1F1 LTR MaLR 0 567 197 432 0 0 0 chr11 128103005 128103053 -22680500 + (TG)n Simple_repeat Simple_repeat 2 49 0 1058 228 69 7 chr11 128103053 128103064 -22680489 - MLT1F1 LTR MaLR -370 197 188 282 206 402 0 chr11 128103168 128103265 -22680288 - MLT1F1 LTR MaLR -406 136 1 3078 264 95 17 chr11 128103268 128105364 -22678189 - L1MEd LINE L1 -1476 4906 2650 685 311 62 9 chr11 128105372 128105694 -22677859 - L1MEc LINE L1 -5965 431 93 32 0 0 0 chr11 128106421 128106453 -22677100 + AT_rich Low_complexity Low_complexity 1 32 0 422 279 21 12 chr11 128106521 128106718 -22676835 - L1MEd LINE L1 -854 1889 1575 417 311 170 4 chr11 128106736 128106977 -22676576 - HAL1 LINE L1 -1062 1445 1165 444 165 114 10 chr11 128106977 128107089 -22676464 + MSTD LTR MaLR 1 128 -246 2986 236 78 11 chr11 128107093 128108044 -22675509 + L1PB1 LINE L1 31 1045 -5818 229 139 0 0 chr11 128108048 128108084 -22675469 + L1PB1 LINE L1 1093 1128 -5735 13126 195 26 12 chr11 128108091 128113536 -22670017 + L1PB1 LINE L1 1311 6864 -3 1467 228 10 6 chr11 128113575 128113886 -22669667 + MSTD LTR MaLR 85 396 0 778 323 18 41 chr11 128114099 128114666 -22668887 - L1MEd LINE L1 -5281 1091 538 434 355 23 42 chr11 128115586 128115896 -22667657 - L2 LINE L2 -2707 607 304 2225 120 0 3 chr11 128115898 128116197 -22667356 - AluSx SINE Alu -12 300 3 215 263 18 0 chr11 128116492 128116549 -22667004 + L2 LINE L2 3005 3062 -251 387 285 248 0 chr11 128117154 128117291 -22666262 + L2 LINE L2 3102 3272 0 224 232 18 0 chr11 128117750 128117806 -22665747 + (CA)n Simple_repeat Simple_repeat 2 58 0 610 327 98 43 chr11 128118261 128118664 -22664889 - L2 LINE L2 -1 3312 2932 228 67 0 0 chr11 128118664 128118694 -22664859 + (CG)n Simple_repeat Simple_repeat 2 31 0 * 405 0 0 0 chr11 128118693 128118738 -22664815 + (CA)n Simple_repeat Simple_repeat 1 45 0 610 327 98 43 chr11 128118694 128118899 -22664654 - L2 LINE L2 -381 2932 2716 411 293 0 0 chr11 128119370 128119469 -22664084 - MIR3 SINE MIR -27 181 83 244 330 10 10 chr11 128120547 128120647 -22662906 + L3b LINE CR1 1296 1395 -188 269 301 219 16 chr11 128122039 128122162 -22661391 - MER5B DNA MER1_type -26 152 5 278 211 0 0 chr11 128122224 128122276 -22661277 + L2 LINE L2 3217 3268 -4 349 295 67 57 chr11 128122562 128122755 -22660798 - MIR SINE MIR -56 206 12 201 238 0 0 chr11 128123830 128123872 -22659681 + C-rich Low_complexity Low_complexity 5 46 0 225 221 104 0 chr11 128124606 128124683 -22658870 - MIR SINE MIR -78 130 46 1233 171 57 3 chr11 128124749 128125047 -22658506 - MER33 DNA MER1_type 0 324 11 192 77 0 0 chr11 128125934 128125960 -22657593 + (T)n Simple_repeat Simple_repeat 1 26 0 1292 161 86 105 chr11 128126953 128127098 -22656455 + MLT1A1 LTR MaLR 1 147 -218 1951 123 7 20 chr11 128127098 128127398 -22656155 + AluSx SINE Alu 17 312 0 1292 161 86 105 chr11 128127398 128127624 -22655929 + MLT1A1 LTR MaLR 147 365 0 1329 241 60 14 chr11 128127954 128128303 -22655250 - MLT1A1 LTR MaLR 0 365 1 222 37 0 0 chr11 128128601 128128628 -22654925 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 387 339 30 12 chr11 128129461 128129626 -22653927 + L2 LINE L2 2878 3045 -268 332 323 56 30 chr11 128130404 128130581 -22652972 - MIR SINE MIR 0 262 76 2313 110 0 0 chr11 128130581 128130880 -22652673 + AluSx SINE Alu 1 299 -13 332 323 56 30 chr11 128130880 128130934 -22652619 - MIR SINE MIR -186 76 25 184 347 13 13 chr11 128131090 128131165 -22652388 - MIR SINE MIR -32 230 156 22 0 0 0 chr11 128131344 128131366 -22652187 + AT_rich Low_complexity Low_complexity 1 22 0 737 311 46 0 chr11 128131467 128131708 -22651845 + MIR SINE MIR 7 258 -4 196 269 173 0 chr11 128131732 128131784 -22651769 - L2 LINE L2 -20 3293 3233 2289 104 0 0 chr11 128132464 128132771 -22650782 + AluSx SINE Alu 1 307 -5 356 277 134 23 chr11 128134039 128134265 -22649288 + MIR SINE MIR 8 257 -5 347 197 15 0 chr11 128134611 128134677 -22648876 + MER5A DNA MER1_type 18 84 -105 196 380 14 0 chr11 128135116 128135187 -22648366 - MIR SINE MIR -92 116 45 413 299 95 7 chr11 128135958 128136105 -22647448 + MIR3 SINE MIR 15 174 -34 406 223 146 50 chr11 128136486 128136746 -22646807 + MLT1H LTR MaLR 263 547 -2 209 372 21 0 chr11 128138711 128138805 -22644748 + MIR SINE MIR 47 142 -66 22 0 0 0 chr11 128138809 128138831 -22644722 + AT_rich Low_complexity Low_complexity 1 22 0 286 256 0 47 chr11 128138849 128138935 -22644618 + MIR3 SINE MIR 115 196 -12 522 283 35 0 chr11 128139339 128139484 -22644069 + L3 LINE CR1 1080 1229 -348 336 250 31 0 chr11 128139540 128139636 -22643917 + L3 LINE CR1 1390 1488 -89 186 231 0 0 chr11 128139660 128139699 -22643854 - L2 LINE L2 -8 3305 3267 227 330 75 0 chr11 128140158 128140264 -22643289 - L2 LINE L2 -40 3232 3119 5098 152 38 6 chr11 128140520 128141884 -22641669 + L1PA13 LINE L1 4736 6145 -18 726 147 37 6 chr11 128141958 128142121 -22641432 + L1M1 LINE L1 2468 2635 -4930 493 351 48 61 chr11 128142248 128142704 -22640849 + L2 LINE L2 2814 3263 -9 609 276 73 69 chr11 128143072 128143712 -22639841 + L1ME LINE L1 4487 5134 -1012 898 217 36 23 chr11 128143712 128143933 -22639620 + MER58A DNA MER1_type 1 224 0 609 276 73 69 chr11 128143933 128144205 -22639348 + L1ME LINE L1 5134 5403 -743 22 35 0 0 chr11 128144441 128144470 -22639083 + AT_rich Low_complexity Low_complexity 1 29 0 720 247 106 0 chr11 128144479 128144807 -22638746 + L1M4 LINE L1 2254 2614 -3532 746 251 169 4 chr11 128144876 128145119 -22638434 - LTR33 LTR ERVL -238 283 1 590 232 154 19 chr11 128145120 128145385 -22638168 + L1ME LINE L1 5402 5700 -462 198 0 0 0 chr11 128145742 128145764 -22637789 + (A)n Simple_repeat Simple_repeat 1 22 0 252 0 0 0 chr11 128145793 128145821 -22637732 + (A)n Simple_repeat Simple_repeat 1 28 0 935 53 15 15 chr11 128146729 128146860 -22636693 + BC200 scRNA scRNA 1 131 -69 1879 214 45 5 chr11 128147112 128147552 -22636001 - L1MB3 LINE L1 -3 6180 5723 290 83 0 67 chr11 128147786 128147846 -22635707 + (T)n Simple_repeat Simple_repeat 1 56 0 229 371 59 0 chr11 128147846 128148016 -22635537 - L2 LINE L2 -575 2739 2560 527 307 176 0 chr11 128148041 128148246 -22635307 + MIR SINE MIR 15 255 -7 398 257 43 57 chr11 128148659 128148799 -22634754 + MIR SINE MIR 20 157 -105 331 263 152 10 chr11 128149541 128149640 -22633913 - MER81 DNA DNA -1 113 1 333 304 74 27 chr11 128150884 128151032 -22632521 + L3b LINE CR1 1289 1443 -140 2517 191 15 4 chr11 128151176 128151638 -22631915 - MLT1C LTR MaLR 0 467 1 322 290 130 19 chr11 128152163 128152325 -22631228 - MIR3 SINE MIR -5 203 24 206 246 0 18 chr11 128152362 128152419 -22631134 - L2 LINE L2 -75 3238 3183 457 293 11 55 chr11 128154613 128154794 -22628759 + MIR SINE MIR 20 192 -70 2068 112 7 3 chr11 128155097 128155400 -22628153 - AluSx SINE Alu -8 304 1 982 228 82 82 chr11 128155556 128155911 -22627642 - MLT1B LTR MaLR 0 390 33 2222 67 35 0 chr11 128155911 128156196 -22627357 + AluY SINE Alu 1 295 -16 982 228 82 82 chr11 128156196 128156230 -22627323 - MLT1B LTR MaLR -356 34 1 324 269 14 103 chr11 128156789 128156906 -22626647 + L2 LINE L2 3121 3224 -48 497 221 18 9 chr11 128156906 128157019 -22626534 + MER81 DNA DNA 1 114 0 324 269 14 103 chr11 128157019 128157046 -22626507 + L2 LINE L2 3224 3252 -20 453 291 22 11 chr11 128157715 128157897 -22625656 - L1ME LINE L1 -343 5778 5595 532 322 42 70 chr11 128157898 128158458 -22625095 - L2 LINE L2 0 3272 2731 387 372 96 15 chr11 128159018 128159413 -22624140 + L2 LINE L2 2838 3264 -8 200 204 0 23 chr11 128160074 128160118 -22623435 + GA-rich Low_complexity Low_complexity 2 44 0 471 243 66 62 chr11 128160948 128161174 -22622379 + L2 LINE L2 2827 3053 -219 204 40 0 0 chr11 128161236 128161261 -22622292 + (TG)n Simple_repeat Simple_repeat 1 25 0 * 366 23 0 0 chr11 128161260 128161303 -22622250 + (GA)n Simple_repeat Simple_repeat 1 43 0 628 254 76 25 chr11 128161902 128162138 -22621415 + L2 LINE L2 2996 3243 -70 432 238 16 8 chr11 128162166 128162288 -22621265 + LTR33 LTR ERVL 23 145 -376 251 167 50 0 chr11 128162460 128162520 -22621033 + LTR33 LTR ERVL 394 456 -65 207 385 52 22 chr11 128162711 128162846 -22620707 - L3b LINE CR1 -68 1515 1377 191 304 170 18 chr11 128163048 128163160 -22620393 + MIR SINE MIR 21 149 -59 386 271 131 90 chr11 128164377 128164720 -22618833 - L2 LINE L2 -1 3271 2915 923 231 125 54 chr11 128164721 128165106 -22618447 + L1ME1 LINE L1 5746 6114 -52 271 342 53 27 chr11 128165244 128165469 -22618084 - L2 LINE L2 -520 2794 2564 412 153 24 0 chr11 128166297 128166382 -22617171 + GA-rich Low_complexity Low_complexity 3 89 0 21 0 0 0 chr11 128166712 128166733 -22616820 + AT_rich Low_complexity Low_complexity 1 21 0 823 134 0 8 chr11 128166902 128167036 -22616517 + FLAM_C SINE Alu 1 133 0 878 282 116 29 chr11 128167040 128167279 -22616274 + L2 LINE L2 2445 2662 -651 1984 184 48 9 chr11 128167279 128167719 -22615834 - L1MB4 LINE L1 -1 6179 5723 878 282 116 29 chr11 128167719 128168239 -22615314 + L2 LINE L2 2662 3277 -36 710 133 260 0 chr11 128168443 128168593 -22614960 - MER5A DNA MER1_type 0 189 1 269 345 153 16 chr11 128168748 128169055 -22614498 + L2 LINE L2 1932 2280 -1034 238 272 88 61 chr11 128168938 128169085 -22614468 - L3 LINE CR1 -345 1232 1082 * 342 333 70 0 chr11 128169109 128169220 -22614333 + MIR SINE MIR 96 223 -39 2104 113 3 0 chr11 128169220 128169513 -22614040 + AluSx SINE Alu 1 294 -18 342 333 70 0 chr11 128169513 128169557 -22613996 + MIR SINE MIR 223 262 0 285 309 37 0 chr11 128169596 128169677 -22613876 + L2 LINE L2 3230 3313 0 186 328 58 40 chr11 128169670 128169844 -22613709 + L2 LINE L2 2322 2498 -816 * 240 275 25 12 chr11 128170863 128170943 -22612610 + T-rich Low_complexity Low_complexity 4 84 0 890 200 45 10 chr11 128172263 128172463 -22611090 - MER63A DNA MER1_type 0 210 4 357 262 37 56 chr11 128172465 128172572 -22610981 - MIR SINE MIR -70 138 34 294 289 197 26 chr11 128173821 128173973 -22609580 - MIR SINE MIR 0 262 85 282 350 22 15 chr11 128174045 128174182 -22609371 + MER5A DNA MER1_type 46 183 -6 267 336 84 8 chr11 128174224 128174343 -22609210 + L2 LINE L2 3142 3269 -3 310 273 107 0 chr11 128174859 128174980 -22608573 + MER103 DNA DNA 17 150 -16 350 204 11 68 chr11 128175087 128175175 -22608378 - MIR3 SINE MIR -54 154 72 235 275 50 12 chr11 128175437 128175517 -22608036 + CT-rich Low_complexity Low_complexity 1 83 0 277 301 15 44 chr11 128175585 128175714 -22607839 - MIR SINE MIR -78 130 1 215 233 27 27 chr11 128176072 128176145 -22607408 + GA-rich Low_complexity Low_complexity 5 77 0 514 272 0 32 chr11 128176298 128176423 -22607130 + L2 LINE L2 3193 3313 0 190 264 38 0 chr11 128176625 128176678 -22606875 - MIR SINE MIR -53 209 155 320 271 186 14 chr11 128177461 128177601 -22605952 - MIR SINE MIR -97 165 2 579 197 87 95 chr11 128178546 128178810 -22604743 - LTR16A1 LTR ERVL -18 439 178 287 290 37 9 chr11 128179075 128179182 -22604371 - ERVL LTR ERVL -414 5350 5241 3234 288 77 51 chr11 128179203 128180252 -22603301 - ERVL LTR ERVL -1942 3054 2033 181 143 0 0 chr11 128180252 128180280 -22603273 + MER5A DNA MER1_type 33 60 -129 3234 288 77 51 chr11 128180280 128180575 -22602978 - ERVL LTR ERVL -2963 2033 1747 369 0 0 0 chr11 128180575 128180616 -22602937 + (CA)n Simple_repeat Simple_repeat 2 42 0 3234 288 77 51 chr11 128180616 128180833 -22602720 - ERVL LTR ERVL -3249 1747 1360 2226 297 61 25 chr11 128180859 128181749 -22601804 - ERVL LTR ERVL -3688 1308 387 1861 161 62 35 chr11 128181877 128182250 -22601303 + MLT1B LTR MaLR 1 383 -7 213 65 0 0 chr11 128182428 128182459 -22601094 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1149 262 43 60 chr11 128182483 128182585 -22600968 - LTR16A1 LTR ERVL 0 457 355 2436 116 5 27 chr11 128182585 128182957 -22600596 - THE1B LTR MaLR 0 364 1 1149 262 43 60 chr11 128182957 128183319 -22600234 - LTR16A1 LTR ERVL -102 355 1 300 182 34 0 chr11 128183350 128183438 -22600115 + (TAGA)n Simple_repeat Simple_repeat 3 93 0 1282 267 28 6 chr11 128183631 128184017 -22599536 - LTR16A LTR ERVL 0 450 7 209 247 54 11 chr11 128184025 128184118 -22599435 - L2 LINE L2 -198 3074 2978 189 191 149 0 chr11 128185300 128185347 -22598206 - L2 LINE L2 -4 3309 3256 391 292 18 0 chr11 128186270 128186383 -22597170 - MER94 DNA DNA -3 131 17 522 199 84 30 chr11 128186392 128186523 -22597030 - MER117 DNA MER1_type -58 139 2 367 333 23 0 chr11 128186550 128186679 -22596874 + MIR SINE MIR 75 206 -56 224 278 0 0 chr11 128188048 128188102 -22595451 + L2 LINE L2 3188 3241 -31 540 272 35 6 chr11 128188103 128188276 -22595277 - MER5B DNA MER1_type 0 178 1 2038 142 32 0 chr11 128188322 128188638 -22594915 + THE1B LTR MaLR 1 326 -38 282 122 0 0 chr11 128188834 128188875 -22594678 + THE1B LTR MaLR 324 364 0 204 40 0 0 chr11 128189706 128189731 -22593822 + (TC)n Simple_repeat Simple_repeat 1 25 0 222 254 34 0 chr11 128190089 128190148 -22593405 + CT-rich Low_complexity Low_complexity 4 64 0 2895 175 117 13 chr11 128191384 128191487 -22592066 - Charlie1a DNA MER1_type -1322 1439 1348 1848 124 4 0 chr11 128191487 128191754 -22591799 + AluSx SINE Alu 1 268 -44 2895 175 117 13 chr11 128191754 128192334 -22591219 - Charlie1a DNA MER1_type -1413 1348 685 277 242 30 0 chr11 128192350 128192416 -22591137 - LTR41 LTR ERVL -203 570 503 618 214 151 0 chr11 128192987 128193146 -22590407 + LTR41 LTR ERVL 1 183 -590 278 223 161 27 chr11 128193598 128193709 -22589844 + LTR50 LTR ERVL 650 795 0 2675 211 51 34 chr11 128193713 128194358 -22589195 - Charlie1a DNA MER1_type -788 667 12 727 284 51 5 chr11 128194379 128194587 -22588966 + MIR SINE MIR 34 248 -14 438 308 151 0 chr11 128195366 128195525 -22588028 - MIR SINE MIR -4 258 76 253 340 78 0 chr11 128196052 128196155 -22587398 + L2 LINE L2 3162 3272 0 1502 112 43 0 chr11 128197231 128197463 -22586090 - L1MA5A LINE L1 0 6297 6056 216 135 0 0 chr11 128197912 128197949 -22585604 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 390 316 13 7 chr11 128198161 128198313 -22585240 - MIR SINE MIR -60 202 50 2284 179 144 6 chr11 128198678 128199165 -22584388 + MER77 LTR ERV1 48 601 -4 577 251 180 16 chr11 128201054 128201309 -22582244 - MLT1I LTR MaLR -39 370 74 210 194 97 0 chr11 128201474 128201536 -22582017 - MIR SINE MIR -60 148 81 237 274 0 20 chr11 128202375 128202426 -22581127 + Zaphod DNA AcHobo 10 59 -3972 249 318 0 0 chr11 128202787 128202850 -22580703 - L2 LINE L2 -54 3218 3156 267 275 0 0 chr11 128202921 128202990 -22580563 - MIR SINE MIR -88 174 106 463 242 11 93 chr11 128203154 128203336 -22580217 - MLT1K LTR MaLR -25 563 397 1704 264 113 4 chr11 128203338 128203898 -22579655 - L1ME3 LINE L1 -6 6156 5536 1400 258 6 36 chr11 128203896 128204400 -22579153 - L1ME3 LINE L1 -822 5324 4836 * 984 257 130 21 chr11 128204409 128204747 -22578806 - MLT1K LTR MaLR -185 403 29 301 333 20 20 chr11 128206633 128206786 -22576767 + CT-rich Low_complexity Low_complexity 1 153 0 199 150 33 0 chr11 128207253 128207313 -22576240 + (CTATA)n Simple_repeat Simple_repeat 4 65 0 240 150 38 0 chr11 128207432 128207512 -22576041 + (TATAG)n Simple_repeat Simple_repeat 3 85 0 259 262 90 82 chr11 128207649 128207834 -22575719 + L1MC4a LINE L1 4747 4929 -1217 1254 173 131 0 chr11 128207834 128208117 -22575436 + MER33 DNA MER1_type 1 320 -4 259 262 90 82 chr11 128208117 128208519 -22575034 + L1MC4a LINE L1 4929 5339 -807 272 163 102 71 chr11 128208561 128208659 -22574894 + L1MC5 LINE L1 7811 7911 -50 739 258 141 44 chr11 128208680 128209272 -22574281 + L1MC4a LINE L1 5377 6025 -96 4493 161 21 9 chr11 128209357 128210147 -22573406 + L1MB3 LINE L1 5384 6183 0 197 288 34 0 chr11 128210191 128210250 -22573303 - MIR3 SINE MIR -39 169 109 1053 270 92 47 chr11 128210262 128210770 -22572783 - MLT1H1 LTR MaLR -15 540 10 186 133 0 0 chr11 128212953 128212983 -22570570 + (CA)n Simple_repeat Simple_repeat 2 31 0 208 292 135 0 chr11 128213540 128213636 -22569917 + MIR SINE MIR 37 145 -63 198 0 0 0 chr11 128214964 128214986 -22568567 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 315 0 0 0 chr11 128214985 128215020 -22568533 + (GA)n Simple_repeat Simple_repeat 1 35 0 283 313 11 66 chr11 128216438 128216620 -22566933 + MER5A DNA MER1_type 18 189 0 1191 83 6 0 chr11 128218414 128218764 -22564789 + (TC)n Simple_repeat Simple_repeat 1 352 0 577 300 91 12 chr11 128218888 128219131 -22564422 + MIR SINE MIR 1 262 0 214 326 61 0 chr11 128219488 128219586 -22563967 - L2 LINE L2 -1 3271 3168 290 311 59 25 chr11 128221484 128221603 -22561950 + L2 LINE L2 3146 3268 -4 399 317 75 45 chr11 128221869 128222137 -22561416 + MLT1K LTR MaLR 11 286 -302 232 298 24 40 chr11 128222455 128222579 -22560974 + MLT2E LTR ERVL 505 626 -2 474 219 79 55 chr11 128222665 128222829 -22560724 + MLT1K LTR MaLR 374 541 -47 294 242 132 0 chr11 128223442 128223533 -22560020 + MIR SINE MIR 85 187 -75 202 125 0 0 chr11 128223602 128223634 -22559919 - MIR SINE MIR -12 250 219 1394 191 45 112 chr11 128223734 128224225 -22559328 + MER39 LTR ERV1 250 707 0 258 297 117 9 chr11 128224233 128224344 -22559209 - MIR SINE MIR -124 138 16 264 30 0 0 chr11 128224723 128224756 -22558797 + (TG)n Simple_repeat Simple_repeat 1 33 0 210 356 34 45 chr11 128225492 128225669 -22557884 - MIR SINE MIR -6 256 82 210 359 47 0 chr11 128225785 128225891 -22557662 - L2 LINE L2 -193 3079 2969 180 152 0 0 chr11 128226816 128226849 -22556704 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 267 339 48 30 chr11 128227729 128227897 -22555656 + MIR3 SINE MIR 10 180 -28 268 250 34 108 chr11 128228136 128228340 -22555213 + L2 LINE L2 2985 3173 -140 2239 186 51 48 chr11 128228354 128228828 -22554725 - MLT1D LTR MaLR -2 503 29 3302 247 92 25 chr11 128229321 128230578 -22552975 + L1MEc LINE L1 754 2107 -4289 2041 128 3 7 chr11 128230578 128230882 -22552671 + AluSx SINE Alu 1 303 -9 3302 247 92 25 chr11 128230882 128230963 -22552590 + L1MEc LINE L1 2107 2181 -4215 2800 194 68 77 chr11 128230935 128231130 -22552423 + L1MD1 LINE L1 1454 1649 -4891 * 224 0 65 0 chr11 128231130 128231161 -22552392 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2800 194 68 77 chr11 128231161 128231505 -22552048 + L1MD1 LINE L1 1649 1986 -4554 1927 147 3 0 chr11 128231505 128231822 -22551731 - AluSp SINE Alu 0 318 1 2800 194 68 77 chr11 128231822 128232138 -22551415 + L1MD1 LINE L1 1986 2303 -4237 4220 114 47 82 chr11 128232188 128233002 -22550551 + LTR1 LTR ERV1 1 785 0 13312 136 20 5 chr11 128233064 128235335 -22548218 + HUERS-P2 LTR ERV1 744 3088 0 4444 126 31 36 chr11 128235384 128236156 -22547397 + LTR1 LTR ERV1 18 785 0 1378 182 76 15 chr11 128236156 128236564 -22546989 + L1MD1 LINE L1 2300 2771 -3890 610 238 36 30 chr11 128236564 128236732 -22546821 - FRAM SINE Alu -10 166 1 1688 242 25 36 chr11 128236739 128237268 -22546285 + L1MD1 LINE L1 2726 3248 -3292 236 137 0 39 chr11 128237279 128237330 -22546223 - L1MC4 LINE L1 -1336 6706 6658 7931 215 45 16 chr11 128237468 128240021 -22543532 + L1MD1 LINE L1 3235 5911 -725 1780 159 149 42 chr11 128240021 128240404 -22543149 + MSTB LTR MaLR 3 426 0 7931 215 45 16 chr11 128240404 128241153 -22542400 + L1MD1 LINE L1 5911 6636 0 1158 178 58 33 chr11 128241175 128241451 -22542102 + L1MB8 LINE L1 5895 6177 -1 2758 236 30 59 chr11 128241456 128241731 -22541822 + L1ME1 LINE L1 2320 2602 -3544 2415 93 0 0 chr11 128241731 128242041 -22541512 + AluY SINE Alu 1 310 -1 2758 236 30 59 chr11 128242041 128242929 -22540624 + L1ME1 LINE L1 2602 3449 -2697 2187 111 0 3 chr11 128242931 128243220 -22540333 + AluSg1 SINE Alu 1 288 -21 231 254 0 0 chr11 128243220 128243283 -22540270 + GA-rich Low_complexity Low_complexity 1 63 0 960 169 0 0 chr11 128243295 128243473 -22540080 + GA-rich Low_complexity Low_complexity 1 178 0 6105 220 60 20 chr11 128243473 128246100 -22537453 + L1ME1 LINE L1 3437 6162 -4 268 230 0 0 chr11 128246438 128246512 -22537041 + (TA)n Simple_repeat Simple_repeat 2 75 0 1896 173 29 32 chr11 128246512 128246859 -22536694 + MER7A DNA MER2_type 2 345 -1 333 0 0 0 chr11 128246863 128246900 -22536653 + (CA)n Simple_repeat Simple_repeat 2 38 0 1178 194 76 75 chr11 128246909 128247300 -22536253 - MLT2D LTR ERVL -20 500 3 1048 308 83 2 chr11 128247301 128247723 -22535830 - LTR33 LTR ERVL -61 460 5 253 277 170 0 chr11 128247732 128247826 -22535727 - MIR SINE MIR -69 139 30 2241 127 0 3 chr11 128248029 128248336 -22535217 - AluSq SINE Alu -7 306 1 977 277 86 30 chr11 128248345 128248786 -22534767 + L2 LINE L2 2847 3312 -1 609 335 39 0 chr11 128249230 128249460 -22534093 - MIR SINE MIR -12 250 12 228 163 0 0 chr11 128249633 128249676 -22533877 + (TAA)n Simple_repeat Simple_repeat 2 44 0 570 238 33 66 chr11 128249724 128249905 -22533648 - MIR SINE MIR -70 192 18 400 296 51 20 chr11 128251566 128251766 -22531787 - MIR SINE MIR -1 261 18 384 345 0 0 chr11 128253010 128253123 -22530430 - MIR SINE MIR -60 202 90 * 407 282 0 0 chr11 128253117 128253220 -22530333 + L2 LINE L2 2584 2686 -628 357 228 191 29 chr11 128253236 128253372 -22530181 + L2 LINE L2 2904 3061 -252 398 206 41 0 chr11 128253411 128253484 -22530069 + L2 LINE L2 3194 3269 -3 237 285 14 14 chr11 128253483 128253562 -22529991 - MIR SINE MIR -107 101 31 * 260 278 172 57 chr11 128254333 128254542 -22529011 + MIR SINE MIR 18 250 -12 221 301 27 0 chr11 128254989 128255062 -22528491 - MIR3 SINE MIR -48 160 86 230 253 27 40 chr11 128255263 128255338 -22528215 - MIR SINE MIR -39 223 150 486 320 92 36 chr11 128256161 128256665 -22526888 + L2 LINE L2 2767 3311 -2 461 268 38 38 chr11 128256662 128256819 -22526734 + MIR3 SINE MIR 30 186 -22 * 218 360 40 0 chr11 128258090 128258190 -22525363 - MIR SINE MIR -73 135 32 283 293 0 0 chr11 128258206 128258288 -22525265 - MER3 DNA MER1_type -124 85 4 208 301 98 41 chr11 128258312 128258435 -22525118 + L2 LINE L2 3136 3265 -7 21 0 0 0 chr11 128258843 128258864 -22524689 + AT_rich Low_complexity Low_complexity 1 21 0 918 305 50 32 chr11 128259437 128259879 -22523674 - LTR16A LTR ERVL 0 450 1 603 280 72 49 chr11 128260441 128260514 -22523039 - L3 LINE CR1 -5 1572 1502 1661 276 31 8 chr11 128260514 128260993 -22522560 - LTR16C LTR ERVL 0 491 2 603 280 72 49 chr11 128260993 128261183 -22522370 - L3 LINE CR1 -75 1502 1303 252 211 171 13 chr11 128261156 128261232 -22522321 + L2 LINE L2 3171 3258 -55 * 183 114 0 0 chr11 128261236 128261271 -22522282 + (A)n Simple_repeat Simple_repeat 1 35 0 240 274 0 0 chr11 128261458 128261509 -22522044 - L2 LINE L2 0 3272 3222 321 287 47 47 chr11 128262444 128262573 -22520980 + L2 LINE L2 3138 3266 -6 228 132 0 0 chr11 128263029 128263067 -22520486 + MIR SINE MIR 97 134 -74 509 245 77 13 chr11 128263288 128263443 -22520110 - MIR SINE MIR -70 192 28 180 111 0 0 chr11 128263560 128263587 -22519966 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 219 281 107 25 chr11 128263595 128263716 -22519837 - L2 LINE L2 -1 3271 3141 407 247 0 0 chr11 128263921 128264006 -22519547 + L3 LINE CR1 1393 1477 -100 327 307 88 25 chr11 128264865 128265075 -22518478 + MIR SINE MIR 16 237 -25 183 329 7 66 chr11 128265558 128265604 -22517949 + L3 LINE CR1 1308 1355 -222 1828 216 41 66 chr11 128265604 128266099 -22517454 + MLT2B1 LTR ERVL 2 485 -35 315 0 0 0 chr11 128266099 128266134 -22517419 + (CA)n Simple_repeat Simple_repeat 1 35 0 1828 216 41 66 chr11 128266134 128266170 -22517383 + MLT2B1 LTR ERVL 485 520 0 183 329 7 66 chr11 128266170 128266260 -22517293 + L3 LINE CR1 1355 1436 -141 209 328 0 0 chr11 128266405 128266463 -22517090 + L3 LINE CR1 1518 1575 -2 1727 157 12 98 chr11 128267542 128267694 -22515859 + MLT1B LTR MaLR 1 164 -226 1566 216 32 35 chr11 128267694 128268065 -22515488 + MLT1A2 LTR MaLR 1 370 -4 1727 157 12 98 chr11 128268065 128268332 -22515221 + MLT1B LTR MaLR 164 384 -6 443 267 136 32 chr11 128269659 128269880 -22513673 + MIR SINE MIR 9 252 -10 496 329 24 33 chr11 128269909 128270119 -22513434 - L3 LINE CR1 -57 1520 1313 572 220 173 0 chr11 128271217 128271367 -22512186 + MER5A DNA MER1_type 14 189 0 420 290 8 32 chr11 128271367 128271477 -22512076 - MIR3 SINE MIR -52 156 50 217 277 321 9 chr11 128271558 128271670 -22511883 - MER5A DNA MER1_type -2 187 41 316 314 12 0 chr11 128271729 128271815 -22511738 + MIR SINE MIR 65 151 -57 203 349 16 0 chr11 128272199 128272262 -22511291 - L2 LINE L2 -2 3270 3207 232 248 79 134 chr11 128273226 128273428 -22510125 - L2 LINE L2 -86 3227 3037 213 257 0 119 chr11 128273758 128273842 -22509711 - MIR SINE MIR -83 125 75 2246 95 0 51 chr11 128274006 128274322 -22509231 + AluSg SINE Alu 6 305 -5 223 281 270 38 chr11 128274580 128274765 -22508788 + MIR SINE MIR 35 262 0 322 233 4 164 chr11 128274874 128274950 -22508603 + MIR SINE MIR 20 65 -182 1124 260 125 20 chr11 128274950 128275357 -22508196 + MLT1J2 LTR MaLR 1 450 0 322 233 4 164 chr11 128275357 128275461 -22508092 + MIR SINE MIR 65 184 -63 265 322 11 28 chr11 128276191 128276371 -22507182 + (TG)n Simple_repeat Simple_repeat 2 178 0 408 215 25 32 chr11 128276559 128276717 -22506836 + (TG)n Simple_repeat Simple_repeat 2 158 0 276 234 16 0 chr11 128277035 128277099 -22506454 - L2 LINE L2 -1 3271 3207 229 276 35 0 chr11 128278011 128278098 -22505455 + (TG)n Simple_repeat Simple_repeat 1 90 0 464 215 12 36 chr11 128278882 128279028 -22504525 - MIR SINE MIR -32 176 31 298 281 110 27 chr11 128279324 128279470 -22504083 + MIR SINE MIR 81 238 -24 835 184 0 101 chr11 128280126 128280333 -22503220 + MIR SINE MIR 76 261 -1 390 227 34 0 chr11 128280356 128280444 -22503109 - MIR SINE MIR -82 180 90 370 305 21 0 chr11 128281096 128281191 -22502362 + MIR3 SINE MIR 91 187 -21 318 50 0 0 chr11 128281633 128281673 -22501880 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 839 258 20 30 chr11 128281790 128281988 -22501565 - MIR SINE MIR -51 211 16 296 225 50 42 chr11 128282140 128282260 -22501293 - HAL1 LINE L1 -1550 957 837 212 234 26 0 chr11 128282622 128282699 -22500854 + (TATG)n Simple_repeat Simple_repeat 4 82 0 596 200 169 19 chr11 128283023 128283183 -22500370 + MIR SINE MIR 62 245 -17 1132 184 41 14 chr11 128283758 128283976 -22499577 + MIR SINE MIR 22 245 -17 260 292 83 50 chr11 128284006 128284126 -22499427 + L2 LINE L2 3181 3304 -9 253 203 51 17 chr11 128284512 128284571 -22498982 - MIR SINE MIR -93 115 55 851 182 0 6 chr11 128284796 128284972 -22498581 + CT-rich Low_complexity Low_complexity 1 175 0 356 257 0 48 chr11 128285709 128285814 -22497739 + MIR SINE MIR 163 262 0 707 254 17 6 chr11 128286346 128286519 -22497034 - MIR SINE MIR 0 262 88 290 215 226 11 chr11 128286744 128286837 -22496716 - MIR SINE MIR -77 131 19 23 0 0 0 chr11 128287716 128287739 -22495814 + AT_rich Low_complexity Low_complexity 1 23 0 291 314 153 16 chr11 128288810 128288934 -22494619 - L2 LINE L2 -25 3247 3107 2244 100 34 0 chr11 128289518 128289809 -22493744 + AluY SINE Alu 1 301 -10 730 229 148 0 chr11 128289836 128290019 -22493534 + MER58A DNA MER1_type 12 221 -3 560 282 59 35 chr11 128290134 128290336 -22493217 - L2 LINE L2 -1 3312 3106 460 324 142 20 chr11 128290311 128290657 -22492896 + L3 LINE CR1 1175 1562 -15 * 246 116 0 0 chr11 128292423 128292466 -22491087 + (TG)n Simple_repeat Simple_repeat 1 43 0 230 205 208 0 chr11 128292598 128292689 -22490864 + MIR SINE MIR 28 137 -71 1062 239 5 5 chr11 128292860 128293078 -22490475 - MIR SINE MIR 0 262 45 208 265 176 29 chr11 128293378 128293480 -22490073 - L2 LINE L2 -5 3308 3192 702 274 79 70 chr11 128293547 128293978 -22489575 - MLT1J1 LTR MaLR 0 446 12 2352 96 54 25 chr11 128294106 128294460 -22489093 - THE1B LTR MaLR 0 364 1 833 122 0 0 chr11 128294961 128295076 -22488477 - FLAM_C SINE Alu -18 115 1 208 252 225 0 chr11 128295091 128295202 -22488351 - MIR SINE MIR -80 182 47 340 257 20 112 chr11 128295757 128295909 -22487644 - MIR3 SINE MIR 0 208 71 387 219 31 21 chr11 128296089 128296185 -22487368 + MIR3 SINE MIR 79 175 -33 2643 165 70 30 chr11 128296307 128296432 -22487121 - Zaphod DNA AcHobo 0 4031 3912 2109 194 6 6 chr11 128296432 128296797 -22486756 + MLT1A1 LTR MaLR 1 365 0 2643 165 70 30 chr11 128296797 128297327 -22486226 - Zaphod DNA AcHobo -119 3912 3350 2511 215 63 36 chr11 128297340 128298001 -22485552 - Zaphod DNA AcHobo -3349 682 4 2693 85 0 3 chr11 128298238 128298603 -22484950 - THE1C LTR MaLR -11 364 1 432 319 65 0 chr11 128299781 128299919 -22483634 + L2 LINE L2 3126 3272 0 189 121 0 0 chr11 128299977 128300010 -22483543 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 306 370 8 8 chr11 128301982 128302101 -22481452 - MIR SINE MIR -65 143 25 327 104 0 0 chr11 128302237 128302285 -22481268 + (T)n Simple_repeat Simple_repeat 1 48 0 2175 166 26 7 chr11 128303547 128303969 -22479584 - L1MB8 LINE L1 0 6178 5749 267 283 33 43 chr11 128304598 128304690 -22478863 - MIR3 SINE MIR -28 180 90 1419 210 136 27 chr11 128304703 128305188 -22478365 - MLT1H LTR MaLR 0 549 12 228 125 0 0 chr11 128305190 128305222 -22478331 - MIR SINE MIR -140 68 37 378 0 0 0 chr11 128306535 128306577 -22476976 + (TG)n Simple_repeat Simple_repeat 1 42 0 368 223 80 18 chr11 128306621 128306733 -22476820 - MIR3 SINE MIR -6 202 84 22 0 0 0 chr11 128307194 128307216 -22476337 + AT_rich Low_complexity Low_complexity 1 22 0 437 215 190 49 chr11 128307485 128307648 -22475905 + MIR3 SINE MIR 1 186 -22 444 230 40 0 chr11 128307690 128307790 -22475763 + MIR SINE MIR 151 254 -8 507 314 49 20 chr11 128307861 128308065 -22475488 + MER63A DNA MER1_type 1 210 0 381 289 20 20 chr11 128309040 128309189 -22474364 + L2 LINE L2 2828 2976 -296 205 284 30 15 chr11 128309444 128309511 -22474042 + L2 LINE L2 3245 3312 -1 870 186 83 0 chr11 128310184 128310340 -22473213 - FAM SINE Alu -6 169 1 736 302 107 54 chr11 128310342 128310819 -22472734 - L2 LINE L2 -19 3253 2756 489 294 51 40 chr11 128310822 128310999 -22472554 + MER91A DNA MER1_type 1 179 -17 215 227 23 0 chr11 128311076 128311120 -22472433 + MIR3 SINE MIR 141 185 -23 374 277 73 34 chr11 128311944 128312121 -22471432 + MIR SINE MIR 79 262 0 347 329 44 15 chr11 128312131 128312268 -22471285 - MIR SINE MIR -13 249 109 685 188 0 36 chr11 128312315 128312453 -22471100 + AluJo SINE Alu 2 134 -178 449 268 30 34 chr11 128312691 128312869 -22470684 + MIR SINE MIR 35 209 -53 528 230 122 0 chr11 128313292 128313431 -22470122 - MIR SINE MIR -93 169 14 277 244 40 201 chr11 128313997 128314271 -22469282 + MIR SINE MIR 9 238 -24 401 191 277 0 chr11 128314753 128314847 -22468706 - MIR SINE MIR -62 200 81 240 250 184 29 chr11 128315214 128315350 -22468203 + L3b LINE CR1 1177 1333 -250 360 281 321 0 chr11 128315676 128315872 -22467681 - L2 LINE L2 -22 3250 2992 1422 204 47 4 chr11 128315888 128316163 -22467390 + AluJb SINE Alu 1 287 -25 607 148 8 8 chr11 128316266 128316388 -22467165 + GA-rich Low_complexity Low_complexity 4 125 0 198 209 0 0 chr11 128316383 128316426 -22467127 + G-rich Low_complexity Low_complexity 4 46 0 * 252 297 16 76 chr11 128316442 128316627 -22466926 - L2 LINE L2 -302 2970 2793 1399 170 19 13 chr11 128316636 128316953 -22466600 - Charlie4a DNA MER1_type -9 499 181 1316 115 0 0 chr11 128316953 128317135 -22466418 + AluSq SINE Alu 130 311 -2 602 190 37 80 chr11 128317135 128317298 -22466255 - Charlie4a DNA MER1_type -317 191 36 1474 257 46 19 chr11 128317369 128317801 -22465752 + L2 LINE L2 2836 3279 -34 1126 252 68 46 chr11 128318101 128318558 -22464995 + MLT1C LTR MaLR 1 467 0 325 294 49 0 chr11 128318570 128318665 -22464888 - Charlie8 DNA MER1_type -2216 201 102 346 232 71 9 chr11 128318665 128318777 -22464776 - LTR67 LTR ERVL 0 557 439 198 298 18 0 chr11 128318910 128318967 -22464586 - MIR SINE MIR -169 93 36 229 263 34 89 chr11 128319035 128319214 -22464339 + MER112 DNA MER1_type 1 169 -91 217 158 26 0 chr11 128319214 128319252 -22464301 + (CCTAT)n Simple_repeat Simple_repeat 2 40 0 283 319 0 0 chr11 128319521 128319593 -22463960 - Charlie8 DNA MER1_type -2344 73 2 262 257 0 14 chr11 128319676 128319746 -22463807 + L2 LINE L2 3229 3297 -16 210 238 171 57 chr11 128321434 128321539 -22462014 - MIR SINE MIR -118 144 28 282 313 113 9 chr11 128321577 128321692 -22461861 - L2 LINE L2 -10 3262 3136 2297 120 56 6 chr11 128322250 128322607 -22460946 - THE1C LTR MaLR 0 375 1 372 241 12 33 chr11 128322934 128323057 -22460496 - MER5B DNA MER1_type -3 186 57 222 318 126 42 chr11 128323315 128323554 -22459999 + L2 LINE L2 3030 3288 -25 404 274 134 13 chr11 128323666 128323823 -22459730 + MIR3 SINE MIR 33 208 0 2266 118 0 0 chr11 128324069 128324365 -22459188 + AluSx SINE Alu 1 296 -16 1106 216 104 120 chr11 128324643 128325161 -22458392 + MLT1J LTR MaLR 1 510 -1 228 248 28 46 chr11 128325228 128325331 -22458222 + MIR SINE MIR 84 178 -30 371 298 152 6 chr11 128325497 128325655 -22457898 + MIR SINE MIR 20 200 -62 242 298 125 10 chr11 128326557 128326661 -22456892 + L2 LINE L2 3149 3264 -8 372 22 0 0 chr11 128326714 128326759 -22456794 + (GTTTG)n Simple_repeat Simple_repeat 4 48 0 390 322 84 35 chr11 128327034 128327236 -22456317 + MIR SINE MIR 16 227 -35 3160 175 6 0 chr11 128327312 128327826 -22455727 - MLT2B1 LTR ERVL 0 520 4 320 289 132 0 chr11 128328256 128328377 -22455176 - MIR3 SINE MIR -6 202 66 538 246 15 8 chr11 128328540 128328670 -22454883 - MLT1L LTR MaLR -149 466 336 1766 183 3 3 chr11 128328692 128328987 -22454566 + AluJb SINE Alu 1 295 -17 2106 158 0 0 chr11 128328987 128329297 -22454256 + AluSx SINE Alu 1 310 -2 330 283 55 21 chr11 128329362 128329507 -22454046 - MLT1L LTR MaLR -424 191 42 247 308 13 13 chr11 128329783 128329861 -22453692 + L2 LINE L2 3236 3313 0 2586 63 0 0 chr11 128330110 128330410 -22453143 - AluY SINE Alu -11 300 1 1794 171 40 60 chr11 128330452 128330850 -22452703 - MLT1B LTR MaLR 0 390 1 864 137 26 20 chr11 128330850 128331003 -22452550 - MLT1B LTR MaLR -236 154 1 414 250 62 7 chr11 128331339 128331483 -22452070 - MLT1I LTR MaLR -11 398 247 309 288 0 0 chr11 128332578 128332658 -22450895 - MIR SINE MIR -2 260 181 1077 259 85 19 chr11 128332737 128332798 -22450755 - MLT1J LTR MaLR -97 414 358 186 43 0 0 chr11 128332798 128332821 -22450732 + (CTTAT)n Simple_repeat Simple_repeat 3 25 0 1077 259 85 19 chr11 128332821 128333137 -22450416 - MLT1J LTR MaLR -153 358 12 291 219 68 0 chr11 128333147 128333220 -22450333 - MIR SINE MIR -71 191 114 249 366 56 37 chr11 128333297 128333458 -22450095 + L2 LINE L2 3108 3271 -1 485 319 48 61 chr11 128334330 128334640 -22448913 + L2 LINE L2 2967 3272 0 987 342 69 49 chr11 128334723 128334886 -22448667 + L3 LINE CR1 852 1010 -567 2246 108 0 36 chr11 128334886 128335192 -22448361 + AluSx SINE Alu 1 295 -17 987 342 69 49 chr11 128335192 128335337 -22448216 + L3 LINE CR1 1010 1151 -426 674 219 92 30 chr11 128335337 128335501 -22448052 + MER45A DNA AcHobo 1 174 -4 987 342 69 49 chr11 128335501 128335901 -22447652 + L3 LINE CR1 1151 1575 -2 229 314 86 57 chr11 128337571 128337676 -22445877 - L3b LINE CR1 -6 1577 1470 225 287 81 0 chr11 128337898 128337985 -22445568 - L2 LINE L2 -10 3303 3210 285 271 122 0 chr11 128338173 128338280 -22445273 - MIR SINE MIR -32 230 111 210 306 135 52 chr11 128338429 128338681 -22444872 - L2 LINE L2 -189 3083 2811 1177 253 97 44 chr11 128340267 128340844 -22442709 + L2 LINE L2 2708 3312 -1 282 216 0 0 chr11 128341148 128341222 -22442331 + (CA)n Simple_repeat Simple_repeat 1 74 0 216 310 0 0 chr11 128342416 128342487 -22441066 + MIR SINE MIR 63 133 -129 1940 113 0 107 chr11 128342657 128342994 -22440559 + AluSx SINE Alu 1 301 -1 495 216 132 89 chr11 128343358 128343548 -22440005 - MIR SINE MIR -63 199 2 445 244 17 50 chr11 128343563 128343682 -22439871 - L2 LINE L2 -3 3310 3196 21 0 0 0 chr11 128344187 128344208 -22439345 + AT_rich Low_complexity Low_complexity 1 21 0 362 290 66 38 chr11 128344244 128344561 -22438992 + L1MC4a LINE L1 5585 5910 -1898 193 320 40 13 chr11 128344634 128344709 -22438844 + MIR SINE MIR 186 262 0 452 251 87 4 chr11 128346324 128346468 -22437085 - MIR3 SINE MIR -39 169 14 403 271 30 30 chr11 128346889 128347055 -22436498 + MIR3 SINE MIR 24 189 -19 535 315 90 0 chr11 128347149 128347349 -22436204 - MIR SINE MIR -10 252 35 297 89 0 0 chr11 128347398 128347443 -22436110 + (CA)n Simple_repeat Simple_repeat 1 45 0 650 175 7 0 chr11 128348233 128348376 -22435177 + (TG)n Simple_repeat Simple_repeat 2 145 0 314 277 106 11 chr11 128348989 128349083 -22434470 - L2 LINE L2 0 3272 3170 210 37 0 0 chr11 128349525 128349552 -22434001 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr11 128349959 128349980 -22433573 + AT_rich Low_complexity Low_complexity 1 21 0 291 54 0 0 chr11 128350329 128350366 -22433187 + (GA)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr11 128350688 128350708 -22432845 + (TG)n Simple_repeat Simple_repeat 2 21 0 278 235 10 0 chr11 128350887 128350989 -22432564 + CT-rich Low_complexity Low_complexity 2 104 0 321 164 0 16 chr11 128353031 128353092 -22430461 + ORSL DNA AcHobo 4 63 -212 715 180 0 53 chr11 128353124 128353274 -22430279 + AluSg/x SINE Alu 133 274 -36 351 0 0 0 chr11 128353277 128353316 -22430237 + (TC)n Simple_repeat Simple_repeat 2 40 0 * 464 89 13 0 chr11 128353315 128353394 -22430159 + (TA)n Simple_repeat Simple_repeat 1 80 0 576 142 58 25 chr11 128353394 128353514 -22430039 + ORSL DNA AcHobo 90 213 -62 507 218 38 8 chr11 128353542 128353675 -22429878 - MIR3 SINE MIR -52 156 20 210 331 97 7 chr11 128354817 128354971 -22428582 + L3b LINE CR1 1405 1572 -11 187 263 0 0 chr11 128355770 128355825 -22427728 - MIR SINE MIR -65 143 98 362 245 19 0 chr11 128356556 128356662 -22426891 - MIR SINE MIR -70 192 85 2303 87 3 7 chr11 128357731 128358029 -22425524 - AluSx SINE Alu -13 299 3 1692 184 75 3 chr11 128359561 128359892 -22423661 + MER82 DNA MER2_type 2 356 -297 801 175 0 7 chr11 128359894 128360031 -22423522 - FAM SINE Alu -14 171 36 1437 221 27 17 chr11 128360032 128360331 -22423222 + MER82 DNA MER2_type 351 652 -1 1313 229 62 10 chr11 128360339 128360712 -22422841 + L1MD2 LINE L1 5789 6132 -227 236 353 53 38 chr11 128361475 128361608 -22421945 - L2 LINE L2 -17 3255 3121 408 274 120 46 chr11 128361657 128361832 -22421721 - MLT1K LTR MaLR -2 586 399 406 216 222 6 chr11 128362258 128362434 -22421119 + MIR SINE MIR 7 220 -42 203 370 30 0 chr11 128362539 128362639 -22420914 - L2 LINE L2 -2 3311 3209 252 272 54 11 chr11 128362759 128362851 -22420702 - MIR SINE MIR -51 211 116 2265 105 0 3 chr11 128362953 128363249 -22420304 + AluSx SINE Alu 1 295 -17 217 330 80 0 chr11 128363683 128363771 -22419782 - MIR SINE MIR -156 106 12 532 292 12 29 chr11 128364217 128364388 -22419165 + MIR SINE MIR 30 197 -65 2374 250 11 5 chr11 128365378 128366010 -22417543 + L1MC4 LINE L1 7104 7739 -303 1024 295 95 9 chr11 128366052 128366503 -22417050 + L2 LINE L2 2285 2774 -540 2353 252 130 16 chr11 128366505 128367009 -22416544 + ERVL-C1 LTR ERVL 411 1003 -4761 1763 203 0 0 chr11 128367009 128367305 -22416248 + AluJo SINE Alu 1 296 -16 2353 252 130 16 chr11 128367305 128367430 -22416123 + ERVL-C1 LTR ERVL 1003 1112 -4652 1557 165 86 18 chr11 128367430 128367769 -22415784 - MER57A LTR ERV1 0 403 42 1827 285 69 23 chr11 128367777 128367844 -22415709 + ERVL-C1 LTR ERVL 1110 1172 -4592 189 107 0 0 chr11 128367844 128367872 -22415681 + (TTGG)n Simple_repeat Simple_repeat 1 28 0 1827 285 69 23 chr11 128367872 128368022 -22415531 + ERVL-C1 LTR ERVL 1172 1314 -4450 2335 129 28 28 chr11 128368022 128368386 -22415167 - THE1B LTR MaLR 0 364 1 1827 285 69 23 chr11 128368386 128368774 -22414779 + ERVL-C1 LTR ERVL 1314 1744 -4020 1619 219 0 3 chr11 128368875 128369176 -22414377 + ERVL-C1 LTR ERVL 2048 2347 -3417 1998 183 97 29 chr11 128369176 128369667 -22413886 - MER39 LTR ERV1 0 707 5 693 174 74 8 chr11 128369670 128369791 -22413762 + ERVL-C1 LTR ERVL 2343 2471 -3293 * 4103 213 38 7 chr11 128369785 128370813 -22412740 + ERVL-C1 LTR ERVL 4620 5651 -3 1383 223 32 47 chr11 128370815 128371218 -22412335 + MLT2C1 LTR ERVL 1 397 0 250 368 24 16 chr11 128371231 128371356 -22412197 + ERVL LTR ERVL 1386 1511 -3485 1585 315 97 41 chr11 128371474 128371626 -22411927 + ERVL LTR ERVL 1758 1900 -3864 2579 120 234 34 chr11 128371626 128372152 -22411401 + MER51A LTR ERV1 1 631 -3 1585 315 97 41 chr11 128372152 128372970 -22410583 + ERVL LTR ERVL 1900 2782 -2982 313 200 216 0 chr11 128373033 128373158 -22410395 - MER5C DNA MER1_type -46 278 127 1634 197 7 10 chr11 128373273 128373572 -22409981 - AluJo SINE Alu -14 298 1 2692 126 82 7 chr11 128373904 128374358 -22409195 - L1PA16 LINE L1 -3 6163 5676 453 290 8 8 chr11 128374636 128374760 -22408793 - MER5C DNA MER1_type -200 124 1 292 274 0 14 chr11 128375014 128375087 -22408466 + ERVL LTR ERVL 3076 3147 -2507 709 265 81 0 chr11 128375151 128375362 -22408191 + ERVL LTR ERVL 3333 3560 -2204 3400 195 90 60 chr11 128375369 128376193 -22407360 - MER21B LTR ERV1 -3 860 12 2504 307 91 63 chr11 128376306 128377963 -22405590 + ERVL LTR ERVL 3347 5362 -402 4423 273 45 26 chr11 128378687 128380000 -22403553 + ERVL LTR ERVL 4008 5350 -414 360 0 0 0 chr11 128380000 128380040 -22403513 + (CA)n Simple_repeat Simple_repeat 2 41 0 4423 273 45 26 chr11 128380040 128380095 -22403458 + ERVL LTR ERVL 5350 5402 -362 1249 236 305 22 chr11 128380469 128381072 -22402481 + LTR50 LTR ERVL 20 793 -2 266 286 143 9 chr11 128382148 128382253 -22401300 - L2 LINE L2 -1 3312 3194 2166 137 0 0 chr11 128382274 128382580 -22400973 + AluSx SINE Alu 1 306 -6 2170 121 0 3 chr11 128383605 128383902 -22399651 + AluSx SINE Alu 1 296 -16 289 297 68 40 chr11 128383953 128384101 -22399452 + MIR SINE MIR 40 191 -71 1577 173 20 105 chr11 128385296 128385695 -22397858 + MLT1A1 LTR MaLR 1 365 0 274 217 0 17 chr11 128386080 128386140 -22397413 - L2 LINE L2 -7 3265 3207 249 108 0 0 chr11 128386539 128386576 -22396977 + (CA)n Simple_repeat Simple_repeat 1 37 0 411 277 80 7 chr11 128387947 128388084 -22395469 - MIR SINE MIR -96 166 20 989 178 0 12 chr11 128389206 128389375 -22394178 + FRAM SINE Alu 1 167 -9 1993 116 8 0 chr11 128390143 128390410 -22393143 - AluSc SINE Alu -40 269 1 692 253 109 47 chr11 128391083 128391791 -22391762 + L1ME3A LINE L1 831 1554 -4862 1244 200 132 0 chr11 128391917 128392280 -22391273 + AluJo SINE Alu 2 399 0 1088 137 0 0 chr11 128392297 128392472 -22391081 + AluSg/x SINE Alu 136 310 0 251 262 110 28 chr11 128392645 128392790 -22390763 + LTR68 LTR ERV1 9 165 -575 648 214 96 102 chr11 128393256 128393727 -22389826 + L1ME3A LINE L1 2485 2952 -3474 910 262 16 62 chr11 128393735 128394044 -22389509 + L1MEc LINE L1 50 344 -6052 2660 254 33 16 chr11 128394207 128394972 -22388581 - L1MEc LINE L1 -5260 1136 359 889 244 70 20 chr11 128394976 128395393 -22388160 + L1MEc LINE L1 2020 4109 -2106 2976 262 65 53 chr11 128395443 128395970 -22387583 + L1ME3A LINE L1 3964 4483 -1967 514 167 21 0 chr11 128395970 128396066 -22387487 + U13 snRNA snRNA 5 102 -2 2976 262 65 53 chr11 128396066 128397079 -22386474 + L1ME3A LINE L1 4483 5550 -900 2466 78 0 0 chr11 128397079 128397372 -22386181 + AluY SINE Alu 1 293 -18 2976 262 65 53 chr11 128397372 128398271 -22385282 + L1ME3A LINE L1 5550 6437 -13 339 258 105 18 chr11 128398289 128398508 -22385045 + HAL1b LINE L1 1228 1348 0 611 230 115 60 chr11 128398525 128398760 -22384793 + L1MC5 LINE L1 7659 7906 -55 1030 162 45 93 chr11 128399792 128399870 -22383683 - MER33 DNA MER1_type -2261 324 244 490 17 0 0 chr11 128399870 128399928 -22383625 + (TTTA)n Simple_repeat Simple_repeat 3 136 0 2190 100 7 0 chr11 128399928 128400209 -22383344 - AluSq SINE Alu -1 340 1 1030 162 45 93 chr11 128400209 128400462 -22383091 - MER33 DNA MER1_type -2339 246 7 359 250 173 0 chr11 128401054 128401222 -22382331 + MIR SINE MIR 63 259 -3 486 285 68 63 chr11 128402342 128402549 -22381004 - MIR SINE MIR -52 210 3 769 291 67 72 chr11 128402886 128403332 -22380221 - L3 LINE CR1 -11 1566 1123 341 155 52 9 chr11 128403392 128403508 -22380045 + CT-rich Low_complexity Low_complexity 1 121 0 2078 138 0 0 chr11 128404958 128405254 -22378299 + AluSx SINE Alu 1 296 -16 428 326 28 0 chr11 128405474 128405615 -22377938 + MIR3 SINE MIR 49 193 -15 192 253 0 72 chr11 128405735 128405818 -22377735 - L2 LINE L2 -8 3264 3188 246 402 0 0 chr11 128406042 128406149 -22377404 + L3 LINE CR1 1464 1570 -7 241 272 254 0 chr11 128406752 128406866 -22376687 + MIR3 SINE MIR 40 182 -26 276 289 78 55 chr11 128407729 128407857 -22375696 - MIR3 SINE MIR -65 143 13 369 301 70 45 chr11 128409159 128409358 -22374195 + L2 LINE L2 3068 3271 -1 1533 259 143 11 chr11 128409404 128409929 -22373624 + L3 LINE CR1 582 1175 -402 907 268 68 0 chr11 128410021 128410256 -22373297 + MIR SINE MIR 8 258 -4 653 274 127 4 chr11 128410264 128410501 -22373052 + L3 LINE CR1 1301 1566 -11 308 336 16 8 chr11 128411222 128411344 -22372209 + MIR3 SINE MIR 67 189 -19 281 294 49 10 chr11 128411421 128411523 -22372030 - MIR SINE MIR -69 139 34 411 290 8 0 chr11 128412691 128412815 -22370738 - MER103 DNA DNA -38 128 4 223 196 18 36 chr11 128412879 128412935 -22370618 + MIR3 SINE MIR 151 205 -3 241 310 23 46 chr11 128413169 128413256 -22370297 + MIR SINE MIR 40 124 -84 490 215 72 28 chr11 128413257 128413447 -22370106 + MLT1E3 LTR MaLR 2 263 -391 3108 156 4 38 chr11 128413452 128414002 -22369551 + L1PA16 LINE L1 5620 6150 -16 26 30 0 0 chr11 128414068 128414101 -22369452 + AT_rich Low_complexity Low_complexity 1 33 0 4074 75 6 6 chr11 128414112 128414648 -22368905 + L1PA10 LINE L1 5622 6157 -11 1226 241 50 9 chr11 128414898 128415221 -22368332 + MLT1E3 LTR MaLR 288 623 -1 333 299 75 9 chr11 128415226 128415333 -22368220 + MIR SINE MIR 132 245 -17 195 341 11 11 chr11 128415332 128415423 -22368130 + MIR SINE MIR 126 216 -46 * 304 279 217 8 chr11 128415837 128415966 -22367587 - L2 LINE L2 -1 3271 3116 3423 249 172 46 chr11 128416416 128416477 -22367076 - L2 LINE L2 -227 3086 3034 2365 103 10 3 chr11 128416477 128416788 -22366765 + AluSq SINE Alu 1 313 0 3423 249 172 46 chr11 128416788 128417102 -22366451 - L2 LINE L2 -279 3034 2761 2414 121 28 6 chr11 128417102 128417458 -22366095 + THE1B LTR MaLR 1 364 0 3423 249 172 46 chr11 128417458 128417586 -22365967 - L2 LINE L2 -552 2761 2650 180 0 0 0 chr11 128417586 128417606 -22365947 + (TA)n Simple_repeat Simple_repeat 2 21 0 3423 249 172 46 chr11 128417606 128418619 -22364934 - L2 LINE L2 -663 2650 1386 471 286 127 24 chr11 128418679 128418892 -22364661 - MIR SINE MIR -11 251 17 1572 172 45 71 chr11 128419209 128419283 -22364270 - MLT1D LTR MaLR 0 505 431 2294 92 14 3 chr11 128419283 128419578 -22363975 - AluSq SINE Alu -11 302 5 1572 172 45 71 chr11 128419578 128419881 -22363672 - MLT1D LTR MaLR -74 431 138 206 241 139 65 chr11 128421679 128421787 -22361766 + MIR SINE MIR 97 212 -50 278 238 19 76 chr11 128421889 128421994 -22361559 - MER5B DNA MER1_type -45 133 35 10378 33 6 153 chr11 128422005 128423626 -22359927 + SVA Other Other 4 1385 -1 250 204 0 0 chr11 128423669 128423718 -22359835 - MER5B DNA MER1_type -129 49 1 783 192 42 6 chr11 128424168 128424335 -22359218 - MER104 DNA Tc2 -5 175 3 388 333 112 49 chr11 128424713 128425230 -22358323 - L2 LINE L2 -7 3265 2718 749 254 114 48 chr11 128425982 128426333 -22357220 - MLT1J1 LTR MaLR 0 446 73 369 337 41 18 chr11 128426411 128426580 -22356973 + MIR3 SINE MIR 5 177 -31 467 260 81 8 chr11 128427496 128427619 -22355934 + MIR3 SINE MIR 56 187 -21 2102 140 0 0 chr11 128430278 128430564 -22352989 + AluSx SINE Alu 6 291 -21 180 284 216 9 chr11 128430985 128431101 -22352452 - MIR SINE MIR -46 216 77 223 241 37 37 chr11 128433162 128433216 -22350337 - MIR SINE MIR -61 147 94 429 237 53 15 chr11 128433244 128433375 -22350178 - MIR SINE MIR -69 193 58 313 275 12 0 chr11 128433907 128433987 -22349566 - MIR SINE MIR -78 130 50 418 265 29 22 chr11 128434480 128434616 -22348937 + Charlie8 DNA MER1_type 49 185 -2232 228 213 0 0 chr11 128434726 128434773 -22348780 + Charlie8 DNA MER1_type 230 276 -2141 2236 102 3 0 chr11 128434983 128435300 -22348253 - AluSp SINE Alu 0 319 2 187 310 43 120 chr11 128435663 128435921 -22347632 - L2 LINE L2 -125 3147 2910 448 302 79 20 chr11 128436048 128436250 -22347303 - L2 LINE L2 -560 2754 2541 185 366 0 24 chr11 128436277 128436359 -22347194 + L2 LINE L2 3234 3313 0 315 330 94 31 chr11 128436470 128436661 -22346892 - MIR SINE MIR -12 250 48 499 230 63 32 chr11 128436860 128436986 -22346567 - L2 LINE L2 -1 3271 3142 252 149 0 0 chr11 128438216 128438263 -22345290 - MER103 DNA DNA -109 57 11 362 359 75 0 chr11 128438597 128438756 -22344797 - L3 LINE CR1 -17 1560 1390 198 71 0 0 chr11 128439300 128439328 -22344225 + (TAA)n Simple_repeat Simple_repeat 1 28 0 2111 110 0 18 chr11 128439446 128439728 -22343825 - AluSq SINE Alu -36 277 1 213 263 35 18 chr11 128439729 128439786 -22343767 - MIR SINE MIR -58 150 93 272 352 11 11 chr11 128439998 128440089 -22343464 + MIR SINE MIR 23 113 -95 256 234 188 0 chr11 128440126 128440190 -22343363 + MIR SINE MIR 179 254 -8 297 0 0 0 chr11 128440221 128440254 -22343299 + (A)n Simple_repeat Simple_repeat 1 33 0 231 278 210 24 chr11 128440422 128440568 -22342985 - L2 LINE L2 -479 2835 2717 3659 116 15 15 chr11 128440568 128441095 -22342458 + MER1A DNA MER1_type 1 527 0 231 278 210 24 chr11 128441095 128441153 -22342400 - L2 LINE L2 -597 2717 2593 768 266 64 21 chr11 128443144 128443377 -22340176 + MIR SINE MIR 14 256 -6 2455 102 0 0 chr11 128443402 128443715 -22339838 + AluSq SINE Alu 1 313 0 708 268 149 4 chr11 128443747 128443975 -22339578 - MIR SINE MIR 0 262 2 270 293 40 0 chr11 128444028 128444103 -22339450 + L2 LINE L2 3193 3270 -2 207 208 19 0 chr11 128444369 128444422 -22339131 + GA-rich Low_complexity Low_complexity 2 55 0 243 0 0 0 chr11 128444920 128444947 -22338606 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 306 0 0 0 chr11 128444956 128444990 -22338563 + (CA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr11 128445221 128445243 -22338310 + AT_rich Low_complexity Low_complexity 1 22 0 316 284 92 30 chr11 128445762 128445922 -22337631 - MIR3 SINE MIR -5 203 32 327 294 55 9 chr11 128446077 128446186 -22337367 - L2 LINE L2 -4 3268 3155 409 197 197 0 chr11 128446563 128446715 -22336838 + MER53 DNA DNA 2 183 -6 265 271 53 30 chr11 128447721 128447767 -22335786 - MIR SINE MIR -44 218 175 2405 138 19 8 chr11 128447767 128448138 -22335415 + THE1C LTR MaLR 1 375 0 265 271 53 30 chr11 128448138 128448235 -22335318 - MIR SINE MIR -87 175 73 1234 160 34 2 chr11 128449485 128449897 -22333656 - MLT2B1 LTR ERVL 0 520 1 1087 170 25 184 chr11 128450462 128450820 -22332733 - AluY SINE Alu 0 301 1 2290 123 10 0 chr11 128451190 128451499 -22332054 - AluSx SINE Alu 0 312 1 222 240 0 0 chr11 128451514 128451564 -22331989 + MIR SINE MIR 77 126 -136 355 244 23 0 chr11 128452092 128452178 -22331375 - MIR SINE MIR -63 145 58 21 0 0 0 chr11 128452829 128452850 -22330703 + AT_rich Low_complexity Low_complexity 1 21 0 1290 243 85 12 chr11 128452884 128453283 -22330270 + MLT1J2 LTR MaLR 2 429 -21 682 205 12 37 chr11 128453293 128453454 -22330099 - MIR SINE MIR -86 176 20 2306 109 0 3 chr11 128454013 128454315 -22329238 + AluSc SINE Alu 1 301 -8 265 212 322 34 chr11 128455266 128455384 -22328169 + MIR SINE MIR 111 262 0 204 54 36 71 chr11 128455559 128455615 -22327938 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 264 227 0 41 chr11 128456023 128456120 -22327433 + MLT1H LTR MaLR 26 118 -431 493 257 273 34 chr11 128456120 128456498 -22327055 + MLT1H LTR MaLR 69 536 -13 183 263 42 85 chr11 128456588 128456706 -22326847 + MIR SINE MIR 109 221 -41 491 224 53 40 chr11 128456984 128457136 -22326417 - L3 LINE CR1 -59 1518 1365 398 293 31 84 chr11 128457176 128457401 -22326152 + L2 LINE L2 3101 3313 0 1161 298 108 19 chr11 128457669 128458203 -22325350 - L2 LINE L2 -4 3309 2709 297 51 0 0 chr11 128458203 128458242 -22325311 + (CA)n Simple_repeat Simple_repeat 1 39 0 1161 298 108 19 chr11 128458242 128458367 -22325186 - L2 LINE L2 -604 2709 2596 947 195 0 0 chr11 128458368 128458522 -22325031 + FRAM SINE Alu 1 153 -23 28 0 0 0 chr11 128458526 128458554 -22324999 + AT_rich Low_complexity Low_complexity 1 28 0 1888 136 7 0 chr11 128458855 128459135 -22324418 + L1MB7 LINE L1 5884 6165 -19 1432 153 44 56 chr11 128459137 128459198 -22324355 + L1MC3 LINE L1 7461 7521 -264 2178 96 14 10 chr11 128459198 128459491 -22324062 + AluSq SINE Alu 1 294 -19 1432 153 44 56 chr11 128459491 128459750 -22323803 + L1MC3 LINE L1 7521 7777 -8 2551 55 0 13 chr11 128460958 128461270 -22322283 + AluY SINE Alu 1 308 -3 343 306 102 19 chr11 128462089 128462246 -22321307 - MER5B DNA MER1_type -7 171 2 746 218 21 64 chr11 128462261 128462376 -22321177 - MER5A DNA MER1_type -4 185 80 2272 125 3 0 chr11 128462376 128462679 -22320874 - AluSx SINE Alu -8 304 1 746 218 21 64 chr11 128462679 128462751 -22320802 - MER5A DNA MER1_type -109 80 6 321 318 12 0 chr11 128462780 128462865 -22320688 + MER5A DNA MER1_type 9 94 -95 294 346 31 31 chr11 128463465 128463595 -22319958 + MIR3 SINE MIR 15 144 -64 838 215 5 11 chr11 128463909 128464100 -22319453 - MARNA DNA Mariner -169 417 228 227 240 0 0 chr11 128464112 128464162 -22319391 + MIR3 SINE MIR 145 194 -14 246 320 47 47 chr11 128464162 128464312 -22319241 - MARNA DNA Mariner -370 216 67 2271 72 14 0 chr11 128464318 128464647 -22318906 - AluSp SINE Alu 0 333 1 711 190 27 49 chr11 128464656 128464840 -22318713 + MER104 DNA MER2_type 1 180 0 194 171 24 49 chr11 128464967 128465008 -22318545 - MER5B DNA MER1_type -3 175 136 * 358 151 0 0 chr11 128464993 128465046 -22318507 + MER5B DNA MER1_type 91 143 -35 234 281 35 44 chr11 128465157 128465271 -22318282 + MLT1K LTR MaLR 455 567 -21 1965 97 17 7 chr11 128465340 128465638 -22317915 - THE1C-int LTR MaLR -1279 301 1 1957 136 56 58 chr11 128465638 128466014 -22317539 - THE1C LTR MaLR 0 375 1 700 176 101 0 chr11 128466090 128466209 -22317344 - FLAM_A SINE Alu -2 131 1 2384 101 83 3 chr11 128466675 128467012 -22316541 + THE1B LTR MaLR 1 364 0 3160 189 28 25 chr11 128467722 128467848 -22315705 + L1MB8 LINE L1 4646 4770 -1414 1716 178 24 0 chr11 128467848 128468140 -22315413 + AluJb SINE Alu 1 299 -13 3160 189 28 25 chr11 128468140 128468645 -22314908 + L1MB8 LINE L1 4770 5274 -910 2112 184 63 42 chr11 128468645 128468744 -22314809 + MLT1D LTR MaLR 1 97 -408 2251 123 0 10 chr11 128468744 128469053 -22314500 + AluSx SINE Alu 1 306 -6 2112 184 63 42 chr11 128469053 128469447 -22314106 + MLT1D LTR MaLR 97 504 -1 3160 189 28 25 chr11 128469447 128469625 -22313928 + L1MB8 LINE L1 5274 5450 -734 589 179 1 9 chr11 128469626 128469743 -22313810 + MLT1D LTR MaLR 28 129 -376 576 206 145 0 chr11 128470293 128470424 -22313129 - MLT1D LTR MaLR -93 412 263 1324 179 16 16 chr11 128470450 128470707 -22312846 + AluJo SINE Alu 1 257 -55 852 174 4 148 chr11 128470715 128470961 -22312592 + L1MB8 LINE L1 5475 5680 -486 1978 126 31 10 chr11 128470961 128471254 -22312299 - AluJb SINE Alu -13 299 1 852 174 4 148 chr11 128471254 128471277 -22312276 + L1MB8 LINE L1 5680 5705 -461 882 213 17 70 chr11 128471279 128471342 -22312211 + AluJo SINE Alu 85 150 -162 2323 115 0 0 chr11 128471342 128471647 -22311906 + AluSg SINE Alu 1 305 -5 882 213 17 70 chr11 128471647 128471813 -22311740 + AluJo SINE Alu 150 302 -10 2075 176 48 20 chr11 128471813 128472273 -22311280 + L1MB8 LINE L1 5698 6170 -8 180 0 0 0 chr11 128473274 128473294 -22310259 + (GGGA)n Simple_repeat Simple_repeat 2 21 0 217 301 175 0 chr11 128473643 128473809 -22309744 - MIR SINE MIR -10 252 58 276 155 52 0 chr11 128473812 128473870 -22309683 + AluS SINE Alu 36 83 -219 31 44 0 0 chr11 128473879 128473924 -22309629 + AT_rich Low_complexity Low_complexity 1 45 0 795 191 0 0 chr11 128473924 128474050 -22309503 - FLAM_C SINE Alu -7 126 1 337 270 40 30 chr11 128474260 128474360 -22309193 - MIR SINE MIR -151 111 11 973 266 90 53 chr11 128476021 128476571 -22306982 + L2 LINE L2 2748 3313 0 201 100 25 25 chr11 128476574 128476614 -22306939 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 291 209 33 55 chr11 128476648 128476739 -22306814 + MIR SINE MIR 26 114 -148 295 241 65 131 chr11 128476783 128476982 -22306571 + MER92C LTR ERV1 3 188 -366 352 152 0 15 chr11 128477045 128477111 -22306442 + MER92C LTR ERV1 490 554 0 2415 109 0 3 chr11 128477357 128477670 -22305883 + AluSq SINE Alu 1 312 -1 259 266 0 21 chr11 128477707 128477801 -22305752 + (TA)n Simple_repeat Simple_repeat 1 92 0 576 254 40 35 chr11 128477861 128478034 -22305519 - MIR SINE MIR -87 175 2 217 178 0 14 chr11 128479273 128479317 -22304236 - MIR SINE MIR -105 157 116 345 323 11 0 chr11 128480064 128480157 -22303396 - L2 LINE L2 -31 3241 3148 340 260 233 7 chr11 128480170 128480320 -22303233 - MIR SINE MIR -56 206 23 2115 168 103 64 chr11 128483028 128483262 -22300291 + MLT2B2 LTR ERVL 10 233 -282 2433 96 0 3 chr11 128483262 128483576 -22299977 - AluSq SINE Alu 0 313 1 2115 168 103 64 chr11 128483576 128483828 -22299725 + MLT2B2 LTR ERVL 233 515 0 377 307 108 17 chr11 128483913 128484089 -22299464 + MIR SINE MIR 52 243 -19 483 316 63 11 chr11 128484113 128484303 -22299250 - MIR SINE MIR -7 255 56 1532 158 46 74 chr11 128484337 128484622 -22298931 - AluJo SINE Alu -35 277 1 1998 104 0 4 chr11 128486214 128486473 -22297080 - AluSx SINE Alu -54 258 1 235 319 151 12 chr11 128486507 128486673 -22296880 + MER5A DNA MER1_type 1 189 0 333 208 28 38 chr11 128486825 128486931 -22296622 + MIR3 SINE MIR 101 205 -3 271 177 115 115 chr11 128487244 128487276 -22296277 + MIR SINE MIR 33 64 -144 2277 199 75 33 chr11 128487276 128487496 -22296057 + MER87 LTR ERV1 1 210 -331 1692 137 91 21 chr11 128487496 128487781 -22295772 + AluJb SINE Alu 1 305 -7 2277 199 75 33 chr11 128487781 128488078 -22295475 + MER87 LTR ERV1 210 540 -1 271 177 115 115 chr11 128488078 128488106 -22295447 + MIR SINE MIR 64 91 -117 2521 180 89 40 chr11 128488106 128488712 -22294841 + MER92B LTR ERV1 1 636 0 271 177 115 115 chr11 128488712 128488763 -22294790 + MIR SINE MIR 90 145 -63 22 0 0 0 chr11 128489344 128489366 -22294187 + AT_rich Low_complexity Low_complexity 1 22 0 316 342 46 26 chr11 128489883 128490035 -22293518 + MIR3 SINE MIR 40 194 -14 657 328 5 0 chr11 128491235 128491436 -22292117 + MIR SINE MIR 48 249 -13 1363 195 97 21 chr11 128491769 128492149 -22291404 + MLT1C LTR MaLR 58 466 -1 264 220 99 55 chr11 128492235 128492326 -22291227 + MIR SINE MIR 59 153 -109 576 228 47 0 chr11 128493650 128493777 -22289776 + L2 LINE L2 3181 3313 0 411 163 0 0 chr11 128493975 128494055 -22289498 + (TG)n Simple_repeat Simple_repeat 1 80 0 810 270 70 9 chr11 128494587 128494817 -22288736 + MIR SINE MIR 17 260 -2 1821 143 0 0 chr11 128494915 128495167 -22288386 - AluSx SINE Alu -17 295 44 1912 168 13 3 chr11 128495167 128495475 -22288078 - AluJo SINE Alu 0 312 1 1548 212 154 2 chr11 128495709 128496157 -22287396 - MLT1E2 LTR MaLR 0 626 111 2334 102 7 83 chr11 128496262 128496683 -22286870 - MER1A DNA MER1_type -140 389 1 248 255 123 19 chr11 128496683 128496789 -22286764 + MER5A DNA MER1_type 46 162 -27 192 338 26 0 chr11 128497816 128497893 -22285660 - L2 LINE L2 -208 3064 2986 272 138 246 15 chr11 128498097 128498162 -22285391 + MIR SINE MIR 37 116 -92 210 118 0 0 chr11 128498575 128498609 -22284944 + (TC)n Simple_repeat Simple_repeat 2 35 0 249 298 39 10 chr11 128499310 128499414 -22284139 - MIR3 SINE MIR -99 109 3 275 192 183 58 chr11 128500566 128500670 -22282883 - MIR3 SINE MIR -54 154 38 578 192 31 8 chr11 128500883 128501013 -22282540 + MER94 DNA DNA 1 133 -1 2378 58 0 64 chr11 128501211 128501539 -22282014 - AluY SINE Alu -4 307 1 359 338 38 13 chr11 128501555 128501712 -22281841 - L2 LINE L2 0 3313 3153 1836 141 8 4 chr11 128501835 128502098 -22281455 - AluJo SINE Alu -48 264 1 606 306 23 0 chr11 128502098 128502271 -22281282 + MIR SINE MIR 80 256 -6 662 278 171 9 chr11 128502415 128502631 -22280922 + MIR SINE MIR 2 252 -10 2186 141 0 6 chr11 128502643 128502956 -22280597 + AluSx SINE Alu 1 311 -1 2189 104 4 0 chr11 128505002 128505302 -22278251 + AluSx SINE Alu 1 301 0 2261 109 3 0 chr11 128505307 128505610 -22277943 + AluSq SINE Alu 1 304 -9 510 260 145 48 chr11 128506678 128506905 -22276648 - MIR SINE MIR -4 258 10 195 278 31 52 chr11 128507031 128507128 -22276425 - L2 LINE L2 -2 3311 3217 219 214 0 0 chr11 128507411 128507453 -22276100 - L2 LINE L2 -8 3264 3223 * 264 333 65 7 chr11 128507437 128507575 -22275978 - MIR SINE MIR -92 170 25 184 298 35 0 chr11 128508410 128508467 -22275086 - L2 LINE L2 -3209 105 47 281 325 65 8 chr11 128508903 128509026 -22274527 + L2 LINE L2 3176 3305 -8 209 211 105 35 chr11 128509082 128509139 -22274414 - L2 LINE L2 -43 3229 3169 315 0 0 0 chr11 128510477 128510512 -22273041 + (TG)n Simple_repeat Simple_repeat 2 36 0 216 347 14 0 chr11 128511185 128511257 -22272296 + MIR SINE MIR 78 150 -112 571 221 23 23 chr11 128511261 128511433 -22272120 - MER104 DNA Tc2 -3 177 6 194 302 0 0 chr11 128511436 128511489 -22272064 + MIR SINE MIR 145 197 -65 433 275 23 46 chr11 128511578 128511709 -22271844 + L2 LINE L2 3186 3313 0 2038 180 26 18 chr11 128512207 128512419 -22271134 - MLT1B LTR MaLR -4 386 168 1624 124 120 4 chr11 128512419 128512703 -22270850 - AluSg SINE Alu 0 310 1 2038 180 26 18 chr11 128512703 128512873 -22270680 - MLT1B LTR MaLR -222 168 1 442 300 53 121 chr11 128512874 128513197 -22270356 - L2 LINE L2 -5 3267 2967 336 250 0 13 chr11 128513300 128513376 -22270177 + MER96 DNA MER1_type? 101 175 0 207 186 403 16 chr11 128513552 128513676 -22269877 + MIR SINE MIR 78 249 -13 395 195 52 0 chr11 128513710 128513787 -22269766 + MIR SINE MIR 125 205 -57 208 227 23 0 chr11 128513817 128513861 -22269692 + MIR SINE MIR 106 150 -112 337 167 0 14 chr11 128513864 128513936 -22269617 - HsTC2 DNA Tc2 -2 1896 1826 346 296 52 41 chr11 128514044 128514216 -22269337 + L2 LINE L2 2430 2603 -711 1278 177 41 126 chr11 128514219 128514631 -22268922 + MLT1C LTR MaLR 91 467 0 321 318 12 0 chr11 128515484 128515569 -22267984 - MER5A DNA MER1_type -95 94 9 746 218 21 64 chr11 128515598 128515670 -22267883 + MER5A DNA MER1_type 6 80 -109 2272 125 3 0 chr11 128515670 128515973 -22267580 + AluSx SINE Alu 1 304 -8 746 218 21 64 chr11 128515973 128516088 -22267465 + MER5A DNA MER1_type 80 185 -4 328 312 102 19 chr11 128516103 128516260 -22267293 + MER5B DNA MER1_type 2 171 -7 2432 93 0 3 chr11 128517079 128517391 -22266162 - AluSq SINE Alu -2 311 1 1059 210 17 2 chr11 128517392 128517643 -22265910 + MLT2B2 LTR ERVL 216 515 0 393 305 102 17 chr11 128517728 128517905 -22265648 + MIR SINE MIR 52 243 -19 483 316 63 11 chr11 128517929 128518119 -22265434 - MIR SINE MIR -7 255 56 1532 158 46 74 chr11 128518153 128518438 -22265115 - AluJo SINE Alu -35 277 1 312 345 117 20 chr11 128519139 128519336 -22264217 - MIR SINE MIR -29 233 18 1998 104 0 4 chr11 128520031 128520290 -22263263 - AluSx SINE Alu -54 258 1 235 319 151 12 chr11 128520324 128520490 -22263063 + MER5A DNA MER1_type 1 189 0 333 208 28 38 chr11 128520643 128520749 -22262804 + MIR3 SINE MIR 101 205 -3 271 177 115 115 chr11 128521062 128521094 -22262459 + MIR SINE MIR 33 64 -144 2278 199 75 33 chr11 128521094 128521314 -22262239 + MER87 LTR ERV1 1 210 -331 1692 137 91 21 chr11 128521314 128521599 -22261954 + AluJb SINE Alu 1 305 -7 2278 199 75 33 chr11 128521599 128521896 -22261657 + MER87 LTR ERV1 210 540 -1 271 177 115 115 chr11 128521896 128521924 -22261629 + MIR SINE MIR 64 91 -117 2521 180 89 40 chr11 128521924 128522530 -22261023 + MER92B LTR ERV1 1 636 0 271 177 115 115 chr11 128522530 128522581 -22260972 + MIR SINE MIR 90 145 -63 22 0 0 0 chr11 128523160 128523182 -22260371 + AT_rich Low_complexity Low_complexity 1 22 0 316 342 46 26 chr11 128523699 128523851 -22259702 + MIR3 SINE MIR 40 194 -14 657 328 5 0 chr11 128525051 128525252 -22258301 + MIR SINE MIR 48 249 -13 1363 195 97 21 chr11 128525585 128525965 -22257588 + MLT1C LTR MaLR 58 466 -1 264 220 99 55 chr11 128526051 128526142 -22257411 + MIR SINE MIR 59 153 -109 576 228 47 0 chr11 128527467 128527594 -22255959 + L2 LINE L2 3181 3313 0 243 0 0 0 chr11 128528079 128528106 -22255447 + (T)n Simple_repeat Simple_repeat 1 27 0 201 171 0 0 chr11 128528115 128528150 -22255403 + A-rich Low_complexity Low_complexity 2 36 0 442 251 89 34 chr11 128528189 128528368 -22255185 - MER5A DNA MER1_type 0 189 1 207 265 0 44 chr11 128529375 128529443 -22254110 + GA-rich Low_complexity Low_complexity 1 65 0 1032 109 53 1 chr11 128530025 128530330 -22253223 - THE1B LTR MaLR 0 364 1 1743 208 102 54 chr11 128530380 128530860 -22252693 - MLT1D LTR MaLR 0 505 3 1352 229 15 63 chr11 128530949 128531359 -22252194 - MLT2C1 LTR ERVL -7 390 1 187 374 26 26 chr11 128531530 128531645 -22251908 + L2 LINE L2 3153 3267 -5 401 278 54 62 chr11 128532044 128532210 -22251343 - MIR3 SINE MIR -28 180 6 1144 206 61 18 chr11 128532409 128532783 -22250770 - MER66A LTR ERV1 -10 468 97 1297 246 57 35 chr11 128533230 128533753 -22249800 + MLT1E3 LTR MaLR 1 619 -5 4255 157 19 46 chr11 128533753 128534507 -22249046 + MER44D DNA MER2_type 1 605 0 2158 122 10 0 chr11 128534709 128535013 -22248540 + AluSx SINE Alu 1 307 -5 2130 124 0 7 chr11 128535025 128535332 -22248221 - AluSg SINE Alu -5 305 1 183 245 179 19 chr11 128535715 128535821 -22247732 + L2 LINE L2 2866 2988 -284 3539 135 110 29 chr11 128536621 128537125 -22246428 - LTR48 LTR ERV1 -3 784 202 1956 152 10 19 chr11 128537125 128537434 -22246119 - AluJb SINE Alu -6 306 1 3539 135 110 29 chr11 128537434 128537654 -22245899 - LTR48 LTR ERV1 -585 202 1 246 188 24 47 chr11 128537658 128537743 -22245810 - MER67B LTR ERV1 0 661 579 * 1370 221 44 42 chr11 128537724 128538108 -22245445 - MER31A LTR ERV1 -100 385 1 1151 210 137 49 chr11 128538136 128538593 -22244960 + MER39 LTR ERV1 11 685 -22 3460 192 50 28 chr11 128538657 128539362 -22244191 + L1ME1 LINE L1 4860 5603 -563 2061 144 38 19 chr11 128539362 128539730 -22243823 - THE1C LTR MaLR 0 375 1 3460 192 50 28 chr11 128539730 128540302 -22243251 + L1ME1 LINE L1 5603 6161 -5 2822 78 95 5 chr11 128540466 128540877 -22242676 + LTR7 LTR ERV1 1 448 -2 1955 134 6 61 chr11 128540934 128541247 -22242306 - AluSx SINE Alu -16 296 1 283 270 52 35 chr11 128541587 128541702 -22241851 - MIR SINE MIR -51 211 95 2000 204 67 29 chr11 128541743 128542223 -22241330 - MLT1D LTR MaLR -7 498 1 333 301 136 69 chr11 128542255 128542690 -22240863 + L2 LINE L2 2809 3272 0 2122 115 3 53 chr11 128543753 128544074 -22239479 + AluSx SINE Alu 1 305 -7 518 304 14 0 chr11 128544360 128544498 -22239055 + MER91B DNA MER1_type 40 179 -11 660 48 0 0 chr11 128544838 128544922 -22238631 + (TGGA)n Simple_repeat Simple_repeat 2 85 0 922 320 137 8 chr11 128545774 128546168 -22237385 - L2 LINE L2 0 3272 2828 2062 124 4 0 chr11 128546423 128546778 -22236775 + AluY SINE Alu 7 362 0 223 208 21 0 chr11 128546883 128546931 -22236622 - MIR SINE MIR -61 147 99 540 277 0 38 chr11 128547024 128547183 -22236370 - MER8 DNA MER2_type -60 179 27 188 279 64 64 chr11 128548521 128548661 -22234892 - L2 LINE L2 -1 3271 3132 257 312 0 0 chr11 128548758 128548835 -22234718 + MIR SINE MIR 96 172 -90 209 253 0 48 chr11 128549781 128549864 -22233689 + GA-rich Low_complexity Low_complexity 4 82 0 339 280 149 15 chr11 128550548 128550784 -22232769 - MER115 DNA AcHobo -327 366 4 2127 115 0 0 chr11 128551097 128551376 -22232177 - AluSq SINE Alu -34 279 1 322 240 75 55 chr11 128551487 128551633 -22231920 - MER20 DNA MER1_type -19 200 52 565 253 36 30 chr11 128552933 128553099 -22230454 - MIR SINE MIR -12 250 84 194 216 0 0 chr11 128553246 128553283 -22230270 - L2 LINE L2 0 3313 3277 261 325 80 41 chr11 128553463 128553617 -22229936 + MIR3 SINE MIR 6 164 -62 206 319 7 67 chr11 128554060 128554195 -22229358 + L2 LINE L2 3187 3313 0 3173 128 59 4 chr11 128554324 128554815 -22228738 + MLT2B1 LTR ERVL 1 518 -2 467 250 138 40 chr11 128554884 128555036 -22228517 - MIR SINE MIR 0 262 96 198 103 0 0 chr11 128555791 128555820 -22227733 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 460 351 34 12 chr11 128556095 128556456 -22227097 - L2 LINE L2 -184 3088 2715 702 285 35 26 chr11 128556910 128557138 -22226415 + MIR SINE MIR 23 252 -10 499 317 65 37 chr11 128557256 128557398 -22226155 + MIR SINE MIR 2 155 -107 2585 134 119 30 chr11 128557398 128557869 -22225684 - MLT2B2 LTR ERVL 0 515 3 499 317 65 37 chr11 128557869 128557972 -22225581 + MIR SINE MIR 155 254 -8 370 278 70 80 chr11 128559042 128559229 -22224324 - MIR3 SINE MIR -19 189 5 270 300 0 14 chr11 128559275 128559345 -22224208 - MIR SINE MIR -6 256 188 223 207 172 0 chr11 128559352 128559410 -22224143 + L2 LINE L2 3188 3255 -17 218 152 0 0 chr11 128559382 128559415 -22224138 + MIR SINE MIR 224 256 -6 * 335 266 231 30 chr11 128559447 128559650 -22223903 + MIR SINE MIR 16 259 -3 258 274 75 108 chr11 128559650 128559956 -22223597 - L2 LINE L2 -87 3185 2890 2294 92 0 0 chr11 128559999 128560305 -22223248 + AluSg SINE Alu 1 306 0 2043 143 41 0 chr11 128561029 128561322 -22222231 + AluSx SINE Alu 1 305 -7 346 307 10 0 chr11 128561645 128561746 -22221807 + L2 LINE L2 178 279 -3035 509 326 5 21 chr11 128561930 128562117 -22221436 + MER5A DNA MER1_type 1 184 -5 1006 219 60 151 chr11 128562124 128562755 -22220798 + MER21B LTR ERV1 27 600 -263 428 258 17 9 chr11 128562762 128562888 -22220665 + MER34 LTR ERV1 1 136 -429 * 1154 192 87 48 chr11 128562880 128563333 -22220220 + MER39 LTR ERV1 186 707 0 482 248 43 21 chr11 128563346 128563487 -22220066 + MER21B LTR ERV1 614 757 -106 322 315 44 33 chr11 128563507 128563688 -22219865 - MIR SINE MIR -70 192 10 23 33 0 0 chr11 128563912 128563942 -22219611 + AT_rich Low_complexity Low_complexity 1 30 0 389 95 16 0 chr11 128564538 128564601 -22218952 + (CA)n Simple_repeat Simple_repeat 2 65 0 22 0 0 0 chr11 128564782 128564804 -22218749 + AT_rich Low_complexity Low_complexity 1 22 0 515 307 158 0 chr11 128564814 128565016 -22218537 - MIR SINE MIR 0 262 29 299 314 76 49 chr11 128564967 128565035 -22218518 + MIR SINE MIR 10 75 -187 * 550 51 25 13 chr11 128565035 128565114 -22218439 + MADE1 DNA Mariner 1 80 0 299 314 76 49 chr11 128565114 128565230 -22218323 + MIR SINE MIR 75 199 -63 26 30 0 0 chr11 128565261 128565294 -22218259 + AT_rich Low_complexity Low_complexity 1 33 0 1803 222 117 32 chr11 128565297 128566162 -22217391 - L2 LINE L2 -2 3311 2380 1745 185 125 14 chr11 128566162 128566578 -22216975 + MLT1C LTR MaLR 1 462 -5 4525 259 164 4 chr11 128566610 128568187 -22215366 - L2 LINE L2 -991 2323 496 180 125 0 0 chr11 128568265 128568297 -22215256 + (TTA)n Simple_repeat Simple_repeat 1 32 0 247 200 165 0 chr11 128568363 128568448 -22215105 - LTR67 LTR ERVL -67 490 392 314 265 80 37 chr11 128568635 128568797 -22214756 - LTR67 LTR ERVL -386 171 3 537 240 32 26 chr11 128569088 128569242 -22214311 - MIR SINE MIR -13 249 95 448 215 103 9 chr11 128569272 128569379 -22214174 + MER91C DNA MER1_type 1 117 -23 359 202 119 0 chr11 128569476 128569560 -22213993 + L2 LINE L2 3161 3254 -18 228 271 0 0 chr11 128569836 128569884 -22213669 - L2 LINE L2 -13 3259 3212 453 301 43 0 chr11 128569884 128570047 -22213506 + MIR SINE MIR 93 262 0 395 174 35 0 chr11 128570741 128570856 -22212697 + (TGGA)n Simple_repeat Simple_repeat 3 121 0 724 276 20 53 chr11 128570859 128571105 -22212448 + MIR SINE MIR 6 243 -19 * 1337 284 75 23 chr11 128571082 128571695 -22211858 - L2 LINE L2 0 3313 2679 725 315 15 0 chr11 128572205 128572405 -22211148 - MIR SINE MIR -26 236 34 552 269 143 16 chr11 128572719 128572901 -22210652 + MIR SINE MIR 1 205 -57 458 239 55 0 chr11 128573400 128573509 -22210044 + L2 LINE L2 3158 3272 0 205 260 0 0 chr11 128573527 128573577 -22209976 + CT-rich Low_complexity Low_complexity 2 51 0 442 251 89 34 chr11 128574261 128574440 -22209113 + MER5A DNA MER1_type 1 189 0 225 0 0 0 chr11 128574517 128574542 -22209011 + (A)n Simple_repeat Simple_repeat 1 25 0 238 203 203 0 chr11 128574574 128574643 -22208910 - MIR3 SINE MIR -11 197 115 1483 184 111 54 chr11 128574664 128575087 -22208466 + MLT1C LTR MaLR 21 467 0 239 294 73 37 chr11 128575088 128575197 -22208356 - MIR3 SINE MIR -91 117 5 2254 166 21 7 chr11 128576895 128577318 -22206235 - L1MB5 LINE L1 -8 6166 5738 1953 153 0 32 chr11 128577693 128578025 -22205528 + AluJo SINE Alu 1 312 0 256 332 102 48 chr11 128578146 128578480 -22205073 - L2 LINE L2 0 3272 2921 374 260 95 27 chr11 128579794 128579985 -22203568 + MIR3 SINE MIR 1 193 -49 467 250 31 44 chr11 128580373 128580533 -22203020 - L2 LINE L2 -1 3312 3155 1883 161 17 0 chr11 128580558 128580724 -22202829 - AluJb SINE Alu -12 300 125 180 0 0 0 chr11 128580724 128580744 -22202809 + (TA)n Simple_repeat Simple_repeat 2 21 0 1883 161 17 0 chr11 128580744 128580868 -22202685 - AluJb SINE Alu -187 125 5 637 277 92 0 chr11 128580945 128581140 -22202413 + MIR SINE MIR 31 243 -19 441 324 57 0 chr11 128581626 128581802 -22201751 - MIR SINE MIR -75 187 2 301 351 22 0 chr11 128581955 128582089 -22201464 + MARNA DNA Mariner 9 145 -441 288 77 0 0 chr11 128582107 128582146 -22201407 + (TTTTG)n Simple_repeat Simple_repeat 4 42 0 1558 122 54 0 chr11 128582361 128582628 -22200925 + AluSx SINE Alu 49 327 0 483 289 13 13 chr11 128582670 128582826 -22200727 - MARNA DNA Mariner -347 239 84 223 285 61 134 chr11 128582855 128583132 -22200421 - L2 LINE L2 -10 3262 3006 2152 125 7 0 chr11 128583142 128583439 -22200114 + AluSg SINE Alu 1 299 -11 282 314 126 19 chr11 128584644 128584803 -22198750 + L3b LINE CR1 1294 1469 -114 2567 24 40 0 chr11 128584869 128585165 -22198388 + AluY SINE Alu 1 308 -3 231 228 11 120 chr11 128585273 128585342 -22198211 + MIR3 SINE MIR 109 167 -41 2308 94 7 0 chr11 128585342 128585641 -22197912 - AluSg SINE Alu -9 301 1 231 228 11 120 chr11 128585641 128585663 -22197890 + MIR3 SINE MIR 167 190 -18 1837 155 14 3 chr11 128585794 128586084 -22197469 - AluSx SINE Alu -19 293 1 248 286 22 22 chr11 128587255 128587346 -22196207 + MIR SINE MIR 46 136 -126 1059 17 0 0 chr11 128587363 128587482 -22196071 - AluSg/x SINE Alu -4 308 190 239 217 58 148 chr11 128589109 128589242 -22194311 - MER5B DNA MER1_type -6 172 59 498 17 0 0 chr11 128589242 128589301 -22194252 + (CA)n Simple_repeat Simple_repeat 1 59 0 239 217 58 148 chr11 128589301 128589356 -22194197 - MER5B DNA MER1_type -119 59 1 1099 188 72 12 chr11 128589697 128589947 -22193606 - ORSL DNA AcHobo 0 275 11 1202 195 0 4 chr11 128591340 128591596 -22191957 + L1ME1 LINE L1 5655 5909 -257 3217 99 39 16 chr11 128591607 128592093 -22191460 + MER1A DNA MER1_type 33 529 0 741 238 29 54 chr11 128592093 128592370 -22191183 + L1ME1 LINE L1 5905 6174 -4 257 218 172 11 chr11 128593567 128593654 -22189899 + L2 LINE L2 3149 3249 -23 2598 71 0 0 chr11 128594009 128594317 -22189236 + AluSp SINE Alu 3 310 -3 24 32 0 0 chr11 128594793 128594824 -22188729 + AT_rich Low_complexity Low_complexity 1 31 0 237 245 0 122 chr11 128594857 128594955 -22188598 - MIR SINE MIR -33 229 144 313 257 152 0 chr11 128594963 128595068 -22188485 - L2 LINE L2 0 3313 3193 220 184 0 0 chr11 128595521 128595559 -22187994 + (TTGG)n Simple_repeat Simple_repeat 1 38 0 676 195 0 0 chr11 128596753 128596866 -22186687 - MER81 DNA DNA 0 114 2 194 260 123 14 chr11 128597153 128597226 -22186327 + MIR3 SINE MIR 4 84 -124 398 287 184 0 chr11 128597339 128597475 -22186078 - MIR SINE MIR -54 208 48 234 128 0 0 chr11 128598665 128598704 -22184849 + (TC)n Simple_repeat Simple_repeat 1 39 0 297 146 52 10 chr11 128599491 128599587 -22183966 + CT-rich Low_complexity Low_complexity 2 101 0 186 143 0 0 chr11 128600705 128600740 -22182813 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 203 349 119 8 chr11 128601425 128601551 -22182002 - L2 LINE L2 -301 2971 2832 319 305 33 40 chr11 128601616 128601767 -22181786 + L2 LINE L2 2962 3111 -161 432 319 137 27 chr11 128601828 128602157 -22181396 + L2 LINE L2 2907 3271 -1 193 247 212 24 chr11 128602230 128602315 -22181238 + L2 LINE L2 3178 3278 -35 325 263 147 11 chr11 128602483 128602578 -22180975 + L2 LINE L2 3160 3267 -5 513 315 103 15 chr11 128602707 128603037 -22180516 - L2 LINE L2 -926 2388 2030 354 311 58 53 chr11 128603283 128603473 -22180080 - MIR3 SINE MIR -11 197 7 304 282 73 18 chr11 128603477 128603587 -22179966 - MIR SINE MIR -77 131 16 217 294 44 0 chr11 128604576 128604644 -22178909 + L3b LINE CR1 1278 1348 -235 2073 132 0 4 chr11 128604798 128605079 -22178474 + AluSx SINE Alu 1 280 -32 183 80 0 0 chr11 128605079 128605104 -22178449 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 277 258 21 41 chr11 128605371 128605468 -22178085 + MIR3 SINE MIR 75 169 -39 1703 160 52 0 chr11 128607385 128607697 -22175856 - AluSx SINE Alu 0 326 1 227 209 104 15 chr11 128608209 128608276 -22175277 + L2 LINE L2 3195 3267 -5 221 276 26 13 chr11 128609621 128609697 -22173856 - L2 LINE L2 -12 3260 3184 423 155 36 24 chr11 128609702 128609719 -22173834 + (TAGA)n Simple_repeat Simple_repeat 3 18 -154 1987 146 0 44 chr11 128609719 128610034 -22173519 + AluSx SINE Alu 1 301 -11 423 155 36 24 chr11 128610034 128610184 -22173369 + (TAGA)n Simple_repeat Simple_repeat 18 172 0 651 221 21 14 chr11 128610215 128610360 -22173193 - MIR SINE MIR -68 194 49 214 254 236 48 chr11 128610996 128611161 -22172392 - L2 LINE L2 -436 2878 2683 1923 143 9 101 chr11 128611178 128611312 -22172241 - MLT1B LTR MaLR -2 388 243 1989 131 20 13 chr11 128611312 128611610 -22171943 - AluSx SINE Alu -12 300 1 1923 143 9 101 chr11 128611610 128611901 -22171652 - MLT1B LTR MaLR -147 243 2 904 132 0 22 chr11 128613346 128613482 -22170071 + FLAM_C SINE Alu 1 133 0 282 271 80 62 chr11 128613594 128614029 -22169524 + HAL1b LINE L1 70 544 -804 2231 125 6 0 chr11 128614118 128614470 -22169083 + AluSq SINE Alu 1 354 0 435 19 0 0 chr11 128614670 128614722 -22168831 + (TG)n Simple_repeat Simple_repeat 2 53 0 2558 96 174 15 chr11 128614806 128614856 -22168697 - LTR46 LTR ERV1 0 460 419 405 0 0 0 chr11 128614856 128614901 -22168652 + (CA)n Simple_repeat Simple_repeat 1 45 0 2558 96 174 15 chr11 128614901 128615247 -22168306 - LTR46 LTR ERV1 -41 419 1 189 0 0 0 chr11 128615626 128615647 -22167906 + (CA)n Simple_repeat Simple_repeat 2 22 0 4448 164 25 13 chr11 128615648 128616488 -22167065 - L1MB2 LINE L1 -34 6137 5288 568 243 128 8 chr11 128617244 128617487 -22166066 + L1ME4a LINE L1 5848 6119 -2 293 218 131 92 chr11 128618342 128618487 -22165066 - MIR SINE MIR -62 146 20 1847 165 7 0 chr11 128618698 128619001 -22164552 + AluJo SINE Alu 1 305 -7 200 286 0 0 chr11 128619105 128619161 -22164392 - MER91 DNA MER1_type -4 186 131 287 227 15 0 chr11 128619785 128619851 -22163702 - MIR3 SINE MIR -22 186 120 448 297 124 68 chr11 128620785 128621229 -22162324 + L1ME LINE L1 2141 2609 -3537 624 336 87 24 chr11 128621321 128621958 -22161595 + L1ME LINE L1 2740 3467 -2679 2496 99 0 0 chr11 128622035 128622348 -22161205 + AluSq SINE Alu 1 313 0 327 291 76 32 chr11 128622462 128622713 -22160840 + L1ME LINE L1 3742 4003 -2143 612 178 0 0 chr11 128622713 128622820 -22160733 + FLAM_C SINE Alu 36 142 -1 631 301 146 46 chr11 128622840 128623355 -22160198 + L1ME LINE L1 3991 4592 -1554 274 250 26 79 chr11 128623681 128623833 -22159720 + L1P LINE L1 4903 5046 -1100 264 329 93 24 chr11 128624064 128624310 -22159243 + L1ME LINE L1 5287 5549 -617 204 165 358 83 chr11 128624332 128624441 -22159112 + MIR SINE MIR 68 206 -56 317 24 24 0 chr11 128624850 128624892 -22158661 + (CCCCAG)n Simple_repeat Simple_repeat 5 47 0 284 221 59 0 chr11 128624954 128625022 -22158531 - MLT2F LTR ERVL -588 75 4 336 189 54 14 chr11 128625336 128625410 -22158143 + L1MC4a LINE L1 4532 4608 -1538 351 310 51 56 chr11 128625429 128625703 -22157850 - L1M LINE L1 -706 5415 5144 1612 179 0 0 chr11 128625715 128625961 -22157592 + AluJb SINE Alu 1 246 -66 5067 132 204 27 chr11 128625978 128627020 -22156533 + MER52C LTR ERV1 39 1264 -14 422 129 0 43 chr11 128627020 128627090 -22156463 + Alu SINE Alu 231 297 -14 2120 144 0 10 chr11 128627150 128627463 -22156090 + AluSx SINE Alu 1 310 -2 1518 239 40 13 chr11 128628279 128628676 -22154877 - MLT1I LTR MaLR -1 408 1 418 297 54 53 chr11 128628726 128628776 -22154777 + L1MC4a LINE L1 4795 4843 -1323 387 0 0 0 chr11 128628776 128628819 -22154734 + (TG)n Simple_repeat Simple_repeat 2 44 0 418 297 54 53 chr11 128628819 128629507 -22154046 + L1MC4a LINE L1 4843 5522 -644 399 313 151 53 chr11 128629570 128629928 -22153625 + L1MC4a LINE L1 5618 6010 -349 607 244 31 0 chr11 128630138 128630265 -22153288 - MER5A DNA MER1_type -55 134 4 455 171 90 9 chr11 128630273 128630384 -22153169 - MLT1J2 LTR MaLR -330 120 1 386 257 162 0 chr11 128630452 128630557 -22152996 + L2 LINE L2 3182 3303 -10 1600 211 54 14 chr11 128631156 128631507 -22152046 + MLT1A1 LTR MaLR 1 365 0 344 269 128 20 chr11 128633999 128634148 -22149405 + MIR SINE MIR 24 188 -74 398 251 80 65 chr11 128634378 128634577 -22148976 - MIR3 SINE MIR -6 202 1 784 240 11 17 chr11 128636080 128636259 -22147294 + MER45A DNA AcHobo 1 178 0 352 240 73 10 chr11 128637552 128637648 -22145905 - MIR SINE MIR -47 215 114 327 266 156 28 chr11 128637828 128637937 -22145616 - L2 LINE L2 0 3313 3191 225 83 0 0 chr11 128638272 128638308 -22145245 + (TG)n Simple_repeat Simple_repeat 2 37 0 332 246 158 0 chr11 128639110 128639224 -22144329 - MIR SINE MIR -80 182 51 316 331 24 24 chr11 128639751 128639878 -22143675 - MIR SINE MIR -70 192 66 615 299 47 81 chr11 128640093 128640437 -22143116 - L2 LINE L2 0 3272 2941 907 318 136 82 chr11 128640503 128640812 -22142741 - L2 LINE L2 -469 2845 2554 2148 142 3 3 chr11 128640812 128641121 -22142432 + AluSx SINE Alu 1 309 -3 907 318 136 82 chr11 128641121 128642564 -22140989 - L2 LINE L2 -760 2554 911 1512 230 89 40 chr11 128642564 128643019 -22140534 + MLT2B1 LTR ERVL 2 484 -36 282 29 0 0 chr11 128643019 128643054 -22140499 + (CA)n Simple_repeat Simple_repeat 2 36 0 1512 230 89 40 chr11 128643054 128643093 -22140460 + MLT2B1 LTR ERVL 484 520 0 907 318 136 82 chr11 128643093 128643884 -22139669 - L2 LINE L2 -2403 911 164 596 174 8 53 chr11 128643925 128644008 -22139545 + Tigger2 DNA MER2_type 3 79 -2639 2198 107 40 0 chr11 128644008 128644306 -22139247 + AluSg SINE Alu 1 310 0 596 174 8 53 chr11 128644306 128644354 -22139199 + Tigger2 DNA MER2_type 79 128 -2590 1965 149 28 36 chr11 128644357 128644502 -22139051 + Tigger2 DNA MER2_type 2349 2494 -214 197 65 32 0 chr11 128644502 128644533 -22139020 + (AATTG)n Simple_repeat Simple_repeat 2 33 0 1540 134 52 45 chr11 128644533 128644796 -22138757 - AluJb SINE Alu -27 285 21 1965 149 28 36 chr11 128644796 128645017 -22138536 + Tigger2 DNA MER2_type 2492 2708 0 692 269 79 35 chr11 128645023 128645426 -22138127 + MLT1J2 LTR MaLR 20 396 -13 220 344 62 0 chr11 128645848 128645944 -22137609 - L2 LINE L2 -1 3271 3170 303 293 38 19 chr11 128646492 128646649 -22136904 + CT-rich Low_complexity Low_complexity 5 164 0 210 143 0 0 chr11 128647094 128647129 -22136424 + (CAG)n Simple_repeat Simple_repeat 3 37 0 473 290 50 23 chr11 128647282 128647503 -22136050 - MIR SINE MIR -3 259 33 315 285 143 100 chr11 128648123 128648426 -22135127 + L3 LINE CR1 900 1229 -348 2501 72 7 0 chr11 128648426 128648731 -22134822 + AluY SINE Alu 1 307 -4 315 285 143 100 chr11 128648731 128648866 -22134687 + L3 LINE CR1 1229 1357 -220 217 240 20 0 chr11 128649116 128649166 -22134387 + L3 LINE CR1 1422 1472 -105 478 293 108 6 chr11 128649738 128649905 -22133648 + MIR SINE MIR 2 185 -77 416 254 41 8 chr11 128649939 128650061 -22133492 + MIR3 SINE MIR 82 207 -1 957 214 172 35 chr11 128650725 128651179 -22132374 + LTR33 LTR ERVL 1 516 -5 349 339 62 0 chr11 128651411 128651541 -22132012 - L2 LINE L2 -1 3271 3134 719 322 108 36 chr11 128652633 128653168 -22130385 - L2 LINE L2 -7 3265 2697 2227 122 0 0 chr11 128653743 128654038 -22129515 + AluSx SINE Alu 1 295 -17 270 344 11 0 chr11 128654637 128654730 -22128823 + L1M4 LINE L1 794 887 -5655 724 255 21 48 chr11 128654774 128655312 -22128241 + L1M4 LINE L1 893 1580 -4962 287 262 125 0 chr11 128655451 128655654 -22127899 - MIR3 SINE MIR -22 240 5 210 309 57 32 chr11 128656169 128656292 -22127261 - MIR SINE MIR -127 135 10 282 248 68 90 chr11 128657531 128657664 -22125889 - L2 LINE L2 -5 3267 3138 280 250 0 28 chr11 128657681 128657753 -22125800 + MIR SINE MIR 1 70 -192 1902 130 7 21 chr11 128657754 128658038 -22125515 + AluSx SINE Alu 1 280 -32 191 341 82 29 chr11 128658073 128658145 -22125408 + MIR SINE MIR 65 132 -130 2401 68 7 7 chr11 128658145 128658439 -22125114 + AluY SINE Alu 2 295 -16 191 341 82 29 chr11 128658439 128658536 -22125017 + MIR SINE MIR 132 243 -19 2637 64 0 10 chr11 128660544 128660857 -22122696 + AluY SINE Alu 1 310 -1 362 323 152 10 chr11 128660918 128661116 -22122437 + MIR SINE MIR 37 262 0 444 67 0 0 chr11 128662959 128663019 -22120534 + Alu SINE Alu 235 294 -17 1603 190 18 73 chr11 128664515 128664910 -22118643 - MLT1A2 LTR MaLR 0 374 2 468 51 0 0 chr11 128665482 128665541 -22118012 + (CA)n Simple_repeat Simple_repeat 1 59 0 210 261 72 0 chr11 128665805 128665874 -22117679 + MIR3 SINE MIR 123 196 -12 323 85 0 0 chr11 128666755 128666802 -22116751 + L1MC1 LINE L1 5941 5987 -1798 183 42 0 0 chr11 128666803 128666827 -22116726 + (GGGA)n Simple_repeat Simple_repeat 2 25 0 319 172 31 0 chr11 128666892 128666956 -22116597 + L1MC1 LINE L1 6255 6320 -13 2215 125 0 0 chr11 128666974 128667269 -22116284 + AluSx SINE Alu 5 299 -13 550 211 0 11 chr11 128667296 128667429 -22116124 + L1MD1 LINE L1 5719 5836 -406 262 304 0 13 chr11 128667437 128667516 -22116037 + MIR SINE MIR 48 125 -83 228 248 124 57 chr11 128668559 128668664 -22114889 + L2 LINE L2 3197 3308 -5 946 188 61 0 chr11 128668787 128668984 -22114569 + MER3 DNA MER1_type 1 209 0 610 224 201 23 chr11 128669065 128669279 -22114274 + MIR SINE MIR 1 252 -10 224 306 0 0 chr11 128669338 128669400 -22114153 - MIR SINE MIR 0 262 201 36762 30 23 2 chr11 128669405 128674755 -22108798 + L1PA2 LINE L1 577 6046 -109 266 283 88 0 chr11 128676007 128676120 -22107433 - MIR SINE MIR -64 144 22 423 275 21 21 chr11 128676177 128676319 -22107234 + L2 LINE L2 3169 3310 -3 381 102 0 0 chr11 128676357 128676416 -22107137 + (GGGA)n Simple_repeat Simple_repeat 2 60 0 289 209 0 30 chr11 128677252 128677319 -22106234 - L2 LINE L2 -1 3312 3248 181 280 0 0 chr11 128677472 128677522 -22106031 + MIR SINE MIR 3 52 -210 255 235 123 0 chr11 128677545 128677626 -22105927 + MIR SINE MIR 168 258 -4 819 148 35 0 chr11 128678051 128678193 -22105360 - MER20 DNA MER1_type 0 219 73 719 138 9 0 chr11 128678361 128678477 -22105076 - AluSg SINE Alu -192 118 2 382 252 69 106 chr11 128678567 128678841 -22104712 - MLT1L LTR MaLR -296 319 56 819 167 8 0 chr11 128678866 128678998 -22104555 + FLAM_C SINE Alu 1 133 0 251 331 8 47 chr11 128679078 128679118 -22104435 - L2 LINE L2 -223 3049 3009 2113 128 42 28 chr11 128679118 128679477 -22104076 - THE1B LTR MaLR 0 364 1 251 331 8 47 chr11 128679477 128679563 -22103990 - L2 LINE L2 -263 3009 2928 577 251 45 62 chr11 128682854 128682900 -22100653 - MER5B DNA MER1_type 0 178 133 2030 153 10 0 chr11 128682900 128683194 -22100359 - AluJb SINE Alu -15 297 1 577 251 45 62 chr11 128683194 128683326 -22100227 - MER5B DNA MER1_type -45 133 3 295 348 118 6 chr11 128684204 128684377 -22099176 - MIR SINE MIR -55 207 19 196 200 60 0 chr11 128685021 128685071 -22098482 + L2 LINE L2 3005 3057 -215 393 22 0 0 chr11 128685788 128685834 -22097719 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 476 320 98 16 chr11 128686460 128686654 -22096899 + MIR SINE MIR 2 211 -51 370 247 70 9 chr11 128686665 128686800 -22096753 - MIR SINE MIR -62 146 13 229 356 0 0 chr11 128687822 128687895 -22095658 - L3 LINE CR1 -99 1478 1406 429 320 43 23 chr11 128687980 128688236 -22095317 - L2 LINE L2 -58 3255 2995 214 270 90 0 chr11 128688220 128688309 -22095244 - L2 LINE L2 -835 2479 2383 * 228 354 42 0 chr11 128689297 128689393 -22094160 + L2 LINE L2 3209 3308 -5 1233 194 155 64 chr11 128689648 128689812 -22093741 + MLT1E2 LTR MaLR 25 173 -453 2057 138 0 0 chr11 128689812 128690088 -22093465 + AluSx SINE Alu 7 282 -30 201 94 0 0 chr11 128690088 128690120 -22093433 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 1233 194 155 64 chr11 128690120 128690453 -22093100 + MLT1E2 LTR MaLR 172 568 -58 1064 190 35 4 chr11 128690502 128690734 -22092819 - L1MB3 LINE L1 -1 6182 5944 238 190 52 0 chr11 128690734 128690792 -22092761 + MLT1E2 LTR MaLR 591 651 -3 386 212 118 94 chr11 128690889 128691022 -22092531 - MIR SINE MIR -25 237 98 1831 173 17 0 chr11 128691022 128691317 -22092236 + AluSx SINE Alu 1 300 -12 386 212 118 94 chr11 128691317 128691353 -22092200 - MIR SINE MIR -164 98 64 197 302 16 78 chr11 128691765 128691894 -22091659 - MIR3 SINE MIR -46 162 42 328 276 110 16 chr11 128692030 128692157 -22091396 + MIR3 SINE MIR 22 160 -48 2145 128 7 0 chr11 128693560 128693850 -22089703 + AluSx SINE Alu 1 292 -20 426 293 23 15 chr11 128694755 128694888 -22088665 - MIR SINE MIR -110 152 19 413 285 56 28 chr11 128695013 128695192 -22088361 + MIR SINE MIR 33 216 -46 204 67 0 0 chr11 128695205 128695235 -22088318 + (CAT)n Simple_repeat Simple_repeat 1 30 0 1352 198 72 58 chr11 128696193 128696552 -22087001 - MLT1A1 LTR MaLR -1 364 1 248 269 0 0 chr11 128696828 128696880 -22086673 + C-rich Low_complexity Low_complexity 6 57 0 296 324 54 0 chr11 128697224 128697335 -22086218 - MIR SINE MIR -66 196 80 497 351 6 0 chr11 128698172 128698343 -22085210 - MIR3 SINE MIR -7 201 30 193 340 50 30 chr11 128698535 128698635 -22084918 - L2 LINE L2 -21 3251 3150 291 368 16 0 chr11 128698641 128698766 -22084787 - L2 LINE L2 0 3313 3187 * 539 272 121 67 chr11 128698765 128698888 -22084665 - MIR SINE MIR -4 258 143 2473 88 0 0 chr11 128698888 128699196 -22084357 + AluY SINE Alu 1 308 -3 539 272 121 67 chr11 128699196 128699311 -22084242 - MIR SINE MIR -119 143 7 397 330 54 57 chr11 128700140 128700510 -22083043 - L2 LINE L2 -5 3267 2899 1188 248 91 65 chr11 128700778 128701274 -22082279 - MLT1J LTR MaLR -2 509 1 367 293 23 15 chr11 128702075 128702208 -22081345 + MER117 DNA MER1_type 64 197 0 191 244 54 100 chr11 128703648 128703809 -22079744 - MIR SINE MIR -16 192 34 202 313 96 26 chr11 128704233 128704348 -22079205 + L2 LINE L2 3144 3266 -6 234 0 0 0 chr11 128705266 128705292 -22078261 + (CA)n Simple_repeat Simple_repeat 2 27 0 389 280 66 25 chr11 128705793 128706036 -22077517 + L1MEd LINE L1 939 1191 -4928 519 329 97 79 chr11 128706065 128706118 -22077435 + HAL1b LINE L1 237 288 -2060 21 36 0 0 chr11 128706118 128706146 -22077407 + AT_rich Low_complexity Low_complexity 1 28 0 519 329 97 79 chr11 128706146 128706205 -22077348 + HAL1b LINE L1 288 344 -2004 831 148 0 37 chr11 128706205 128706340 -22077213 + FLAM_C SINE Alu 3 132 -1 519 329 97 79 chr11 128706340 128706692 -22076861 + HAL1b LINE L1 344 1738 -610 291 304 109 7 chr11 128706856 128706994 -22076559 - MLT1I LTR MaLR -3 406 255 724 322 87 93 chr11 128707392 128708017 -22075536 + HAL1b LINE L1 158 385 -963 831 148 0 37 chr11 128708017 128708152 -22075401 + FLAM_C SINE Alu 3 132 -1 724 322 87 93 chr11 128708152 128708504 -22075049 + HAL1b LINE L1 385 738 -610 469 290 132 40 chr11 128708668 128708940 -22074613 - MLT1I LTR MaLR -3 406 110 2341 66 0 19 chr11 128709097 128709414 -22074139 - AluY SINE Alu 0 311 1 3462 206 48 65 chr11 128709759 128710530 -22073023 + L1ME3A LINE L1 7 790 -5616 6370 71 2 0 chr11 128710530 128711662 -22071891 - L1PA7 LINE L1 -3 6151 4982 3462 206 48 65 chr11 128711662 128711710 -22071843 + L1ME3A LINE L1 790 837 -5569 2136 110 0 7 chr11 128711710 128712009 -22071544 - AluSx SINE Alu -15 297 1 3462 206 48 65 chr11 128712009 128712069 -22071484 + L1ME3A LINE L1 837 897 -5509 186 118 0 0 chr11 128712069 128712103 -22071450 + (TA)n Simple_repeat Simple_repeat 2 35 0 3462 206 48 65 chr11 128712103 128713028 -22070525 + L1ME3A LINE L1 897 2042 -4364 5476 211 41 19 chr11 128713057 128713810 -22069743 + L1M4 LINE L1 3553 4287 -1859 2229 105 0 0 chr11 128713810 128714114 -22069439 + AluSq SINE Alu 1 304 -9 5476 211 41 19 chr11 128714114 128714423 -22069130 + L1M4 LINE L1 4287 4588 -1558 2156 188 31 82 chr11 128714423 128714971 -22068582 - MLT2B1 LTR ERVL 0 520 1 5476 211 41 19 chr11 128714971 128715316 -22068237 + L1M4 LINE L1 4588 4993 -1153 2198 116 3 0 chr11 128715316 128715627 -22067926 + AluSx SINE Alu 1 312 0 1201 224 49 35 chr11 128715627 128715752 -22067801 + L1MD2 LINE L1 6007 6129 -230 1479 120 87 0 chr11 128715752 128715994 -22067559 + AluSx SINE Alu 39 301 -11 1201 224 49 35 chr11 128715994 128716216 -22067337 + L1MD2 LINE L1 6129 6359 0 870 230 68 72 chr11 128716251 128716430 -22067123 + MLT1J LTR MaLR 1 179 -271 2356 79 0 0 chr11 128716430 128716733 -22066820 - AluSq SINE Alu -10 303 1 870 230 68 72 chr11 128716733 128716950 -22066603 + MLT1J LTR MaLR 179 385 -65 888 285 102 18 chr11 128717071 128717765 -22065788 + L1ME3A LINE L1 2534 3299 -3107 243 88 0 0 chr11 128717765 128717799 -22065754 + (TA)n Simple_repeat Simple_repeat 1 34 0 888 285 102 18 chr11 128717799 128717869 -22065684 + L1ME3A LINE L1 3299 3362 -3044 364 122 61 0 chr11 128717910 128717992 -22065561 + L1MC5 LINE L1 7152 7238 -723 837 299 65 29 chr11 128718180 128718766 -22064787 + L1ME3A LINE L1 4833 5439 -967 890 214 26 10 chr11 128718771 128718963 -22064590 - MLT1C LTR MaLR 0 467 273 1028 204 115 26 chr11 128719065 128719369 -22064184 - MLT1C LTR MaLR -136 331 1 540 206 82 117 chr11 128719373 128719505 -22064048 - MLT1C LTR MaLR -219 248 113 2328 118 33 33 chr11 128719505 128719869 -22063684 - THE1B LTR MaLR 0 364 1 540 206 82 117 chr11 128719869 128719887 -22063666 - MLT1C LTR MaLR -354 113 96 2450 161 47 0 chr11 128719887 128720290 -22063263 - MSTB LTR MaLR -4 422 1 540 206 82 117 chr11 128720290 128720395 -22063158 - MLT1C LTR MaLR -371 96 1 5380 180 49 98 chr11 128720396 128721777 -22061776 - MLT1C-int LTR MaLR -1 1370 58 1738 207 76 27 chr11 128721777 128722222 -22061331 - MLT1C LTR MaLR 0 467 1 351 294 59 33 chr11 128722298 128722557 -22060996 + L1ME3A LINE L1 5516 5789 -763 1090 269 82 13 chr11 128722559 128723041 -22060512 + L2 LINE L2 2742 3269 -44 605 332 45 0 chr11 128723137 128723339 -22060214 - MIR SINE MIR -49 213 3 1112 273 112 7 chr11 128723373 128723791 -22059762 + LTR16B LTR ERVL 3 464 0 1850 228 58 45 chr11 128723819 128723925 -22059628 + L1ME3A LINE L1 5844 5947 -483 1464 202 3 3 chr11 128723925 128724227 -22059326 + AluJb SINE Alu 1 302 -10 1850 228 58 45 chr11 128724227 128724447 -22059106 + L1ME3A LINE L1 5947 6163 -267 1473 185 3 31 chr11 128724447 128724766 -22058787 - AluJb SINE Alu -2 310 1 1850 228 58 45 chr11 128724766 128725012 -22058541 + L1ME3A LINE L1 6163 6424 -6 671 167 194 0 chr11 128725304 128725448 -22058105 + MER96 DNA MER1_type? 1 172 -3 1972 119 14 0 chr11 128725764 128726041 -22057512 + AluSx SINE Alu 10 290 -22 1949 183 17 12 chr11 128726049 128726394 -22057159 - MLT1A1 LTR MaLR -18 347 1 414 0 0 0 chr11 128726996 128727042 -22056511 + (CA)n Simple_repeat Simple_repeat 2 47 0 211 372 0 6 chr11 128727246 128727410 -22056143 + (CAGG)n Simple_repeat Simple_repeat 2 164 0 * 385 335 0 0 chr11 128727303 128727482 -22056071 + (TATG)n Simple_repeat Simple_repeat 1 179 0 244 331 181 24 chr11 128727536 128727702 -22055851 - L2 LINE L2 -177 3095 2904 336 283 86 33 chr11 128728568 128728720 -22054833 + MIR SINE MIR 59 218 -44 355 294 103 27 chr11 128729356 128729502 -22054051 + MIR3 SINE MIR 27 183 -25 * 518 266 79 61 chr11 128729490 128729832 -22053721 + L2 LINE L2 2949 3296 -17 364 177 182 20 chr11 128730348 128730460 -22053093 - MIR SINE MIR -63 145 32 231 36 0 0 chr11 128730504 128730532 -22053021 + (GA)n Simple_repeat Simple_repeat 2 29 0 674 265 101 9 chr11 128730986 128731205 -22052348 - Charlie8 DNA MER1_type -2141 276 38 2528 147 35 103 chr11 128731208 128731375 -22052178 - L1MA10 LINE L1 0 6334 6157 243 0 0 0 chr11 128731375 128731402 -22052151 + (TG)n Simple_repeat Simple_repeat 1 27 0 2528 147 35 103 chr11 128731402 128731853 -22051700 - L1MA10 LINE L1 -177 6157 5758 334 258 175 17 chr11 128732734 128732854 -22050699 + MIR3 SINE MIR 3 141 -67 444 174 65 0 chr11 128733701 128733793 -22049760 - MIR SINE MIR -58 150 53 552 327 42 0 chr11 128733871 128734039 -22049514 + L2 LINE L2 3139 3313 0 188 103 0 0 chr11 128734045 128734074 -22049479 - L2 LINE L2 -217 3055 3027 247 220 0 0 chr11 128734939 128734989 -22048564 - L2 LINE L2 -13 3259 3210 359 298 15 15 chr11 128735416 128735600 -22047953 + GA-rich Low_complexity Low_complexity 1 184 0 306 294 138 47 chr11 128735768 128736108 -22047445 - L2 LINE L2 -24 3248 2878 * 316 281 7 30 chr11 128736081 128736236 -22047317 + MIR SINE MIR 58 262 0 2108 196 50 76 chr11 128736458 128737039 -22046514 + MLT1F1 LTR MaLR 1 566 -1 447 231 50 8 chr11 128737388 128737509 -22046044 + MIR SINE MIR 47 172 -90 255 284 0 64 chr11 128737842 128737951 -22045602 + MIR SINE MIR 90 191 -71 288 259 7 21 chr11 128738289 128738432 -22045121 + (TGGA)n Simple_repeat Simple_repeat 2 142 0 180 0 0 0 chr11 128738443 128738463 -22045090 + (GGAA)n Simple_repeat Simple_repeat 2 21 0 437 319 83 13 chr11 128738968 128739125 -22044428 + MIR3 SINE MIR 20 187 -21 402 243 45 9 chr11 128740389 128740500 -22043053 - MIR3 SINE MIR -12 196 82 706 195 92 6 chr11 128740718 128740892 -22042661 + MIR SINE MIR 74 262 0 271 263 183 15 chr11 128741692 128741829 -22041724 + L3b LINE CR1 1303 1462 -121 264 130 0 0 chr11 128742175 128742221 -22041332 + (CA)n Simple_repeat Simple_repeat 2 47 0 366 262 102 32 chr11 128742861 128743048 -22040505 + MIR SINE MIR 22 221 -41 487 248 45 15 chr11 128743183 128743316 -22040237 - MIR SINE MIR -98 164 28 372 22 0 0 chr11 128743424 128743469 -22040084 + (CA)n Simple_repeat Simple_repeat 1 45 0 293 322 67 54 chr11 128743715 128743864 -22039689 - MIR SINE MIR -43 165 15 188 169 117 91 chr11 128744052 128744129 -22039424 - L2 LINE L2 -3 3269 3191 299 339 68 0 chr11 128744348 128744466 -22039087 - MIR SINE MIR -130 132 7 2121 107 20 3 chr11 128744705 128745004 -22038549 - AluSx SINE Alu -8 304 1 470 299 35 30 chr11 128745325 128745526 -22038027 + L2 LINE L2 2605 2806 -508 411 199 199 122 chr11 128745758 128746079 -22037474 + MLT1I LTR MaLR 64 409 0 195 281 183 113 chr11 128746083 128746357 -22037196 + L2 LINE L2 2980 3272 0 232 338 0 0 chr11 128747250 128747330 -22036223 + L1M1 LINE L1 5503 5582 -722 389 233 151 49 chr11 128747425 128747668 -22035885 + L1ME4a LINE L1 5673 5963 -158 23 78 0 0 chr11 128747672 128747723 -22035830 + AT_rich Low_complexity Low_complexity 1 51 0 370 255 50 111 chr11 128747744 128747993 -22035560 + L1ME4a LINE L1 5802 6032 -89 1970 112 0 29 chr11 128747993 128748306 -22035247 - AluSg SINE Alu -6 304 1 370 255 50 111 chr11 128748306 128748354 -22035199 + L1ME4a LINE L1 6032 6081 -40 194 281 40 131 chr11 128748354 128748553 -22035000 + MIR3 SINE MIR 22 202 -6 1243 229 129 28 chr11 128749015 128749378 -22034175 - MLT1J2 LTR MaLR -12 438 39 189 311 164 39 chr11 128749708 128750505 -22033048 + L2 LINE L2 1891 2787 -527 485 218 207 0 chr11 128752061 128752235 -22031318 + L2 LINE L2 2645 2854 -460 312 286 97 40 chr11 128752224 128752399 -22031154 + L2 LINE L2 3124 3308 -5 * 462 191 198 19 chr11 128753054 128753216 -22030337 - L2 LINE L2 -1076 2238 2048 913 207 0 107 chr11 128753251 128753522 -22030031 + HAL1 LINE L1 133 374 -2133 312 265 73 66 chr11 128753528 128753664 -22029889 + MIR SINE MIR 94 230 -32 * 984 266 35 7 chr11 128753637 128753926 -22029627 + L2 LINE L2 1783 2079 -1235 2994 233 101 52 chr11 128753926 128754702 -22028851 + HAL1 LINE L1 387 1239 -1268 1100 163 6 0 chr11 128754702 128754874 -22028679 + FAM SINE Alu 3 175 0 2994 233 101 52 chr11 128754874 128755244 -22028309 + HAL1 LINE L1 1239 1589 -918 391 174 14 0 chr11 128755244 128755313 -22028240 - MLT1I LTR MaLR 0 409 340 5693 203 52 26 chr11 128755423 128757561 -22025992 + L1M3f LINE L1 1251 3450 -4073 38577 80 13 13 chr11 128757565 128763703 -22019850 + L1PA6 LINE L1 11 6152 -2 1402 158 88 6 chr11 128763689 128764127 -22019426 + L1M3f LINE L1 3410 3875 -3690 * 1893 127 0 10 chr11 128765089 128765389 -22018164 - AluSq SINE Alu -16 297 1 199 286 8 105 chr11 128765908 128766041 -22017512 - L2 LINE L2 -208 3064 2945 2115 113 0 3 chr11 128766428 128766738 -22016815 + AluSq SINE Alu 1 309 -4 238 111 0 0 chr11 128766738 128766774 -22016779 - MIR SINE MIR -131 131 96 2013 110 11 0 chr11 128767554 128767836 -22015717 + AluSx SINE Alu 1 285 -27 360 0 0 0 chr11 128767836 128767876 -22015677 + (CA)n Simple_repeat Simple_repeat 2 41 0 232 295 98 31 chr11 128768122 128768230 -22015323 + MIR SINE MIR 35 149 -64 591 208 48 16 chr11 128768645 128768770 -22014783 - FLAM_A SINE Alu -4 129 1 374 120 0 27 chr11 128768776 128768851 -22014702 - L1MB7 LINE L1 -9 6175 6103 937 100 23 0 chr11 128769357 128769520 -22014033 + AluSg/x SINE Alu 150 315 0 276 196 28 131 chr11 128769714 128769821 -22013732 + FLAM_C SINE Alu 35 130 -3 656 279 134 26 chr11 128770063 128770368 -22013185 + MLT1J1 LTR MaLR 1 338 -108 411 285 58 35 chr11 128770818 128770990 -22012563 - L1ME LINE L1 -362 5800 5625 4440 130 83 48 chr11 128771124 128772093 -22011460 + L1MB7 LINE L1 5202 6184 0 2071 104 21 0 chr11 128772104 128772393 -22011160 + AluSg SINE Alu 1 295 -15 2307 188 73 11 chr11 128772396 128772848 -22010705 - MLT1F LTR MaLR -59 483 4 944 207 157 5 chr11 128772878 128773095 -22010458 - MIR SINE MIR 0 262 13 1734 118 98 11 chr11 128773184 128773471 -22010082 + AluSx SINE Alu 1 312 0 26 50 0 0 chr11 128773609 128773649 -22009904 + GC_rich Low_complexity Low_complexity 1 40 0 237 98 0 0 chr11 128773670 128773711 -22009842 + (A)n Simple_repeat Simple_repeat 1 41 0 5798 126 54 4 chr11 128773728 128774859 -22008694 + L1MA4 LINE L1 5103 6289 -11 532 309 0 0 chr11 128774863 128774999 -22008554 - MLT1I LTR MaLR -240 169 34 234 0 0 0 chr11 128775029 128775055 -22008498 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 413 257 23 94 chr11 128775231 128775402 -22008151 - MLT1I-int LTR MaLR -185 1186 1028 2319 156 54 5 chr11 128775480 128775890 -22007663 + MSTB1 LTR MaLR 1 430 -2 776 233 25 0 chr11 128776860 128777019 -22006534 - AluSg/x SINE Alu -13 297 135 1075 282 118 3 chr11 128777036 128777401 -22006152 - MLT1I LTR MaLR -2 407 1 649 246 158 27 chr11 128777401 128777661 -22005892 + HAL1 LINE L1 1585 1878 -629 989 241 124 47 chr11 128777722 128778149 -22005404 + HAL1 LINE L1 1734 2193 -314 428 211 106 81 chr11 128778162 128778243 -22005310 + HAL1 LINE L1 2256 2334 -173 2179 110 3 0 chr11 128778243 128778543 -22005010 + AluSg SINE Alu 1 301 -9 428 211 106 81 chr11 128778543 128778707 -22004846 + HAL1 LINE L1 2334 2507 0 334 338 41 21 chr11 128778758 128778903 -22004650 - L3 LINE CR1 -46 1531 1384 1672 180 3 0 chr11 128779051 128779340 -22004213 + AluJo SINE Alu 1 290 -22 715 225 114 14 chr11 128779748 128780153 -22003400 + L1MEc LINE L1 2116 2534 -3681 1738 128 89 89 chr11 128780165 128780524 -22003029 - THE1B LTR MaLR -5 359 1 3665 179 71 105 chr11 128780524 128781810 -22001743 + L1M4 LINE L1 3866 5107 -1039 689 288 66 51 chr11 128781906 128782239 -22001314 + L2 LINE L2 2933 3270 -2 416 213 12 0 chr11 128782304 128782384 -22001169 - MIR SINE MIR -109 153 73 564 220 215 6 chr11 128782592 128782769 -22000784 + MIR SINE MIR 49 262 0 207 0 0 0 chr11 128782982 128783005 -22000548 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 441 301 74 12 chr11 128783448 128783611 -21999942 + MIR SINE MIR 13 143 -65 479 187 0 0 chr11 128783937 128784012 -21999541 - MER63 DNA MER1_type -307 755 681 303 224 0 0 chr11 128784187 128784294 -21999259 + (CA)n Simple_repeat Simple_repeat 1 107 0 732 151 9 211 chr11 128784864 128784997 -21998556 + MLT1B LTR MaLR 5 31 -359 1343 183 72 28 chr11 128784997 128785287 -21998266 + AluJb SINE Alu 1 303 -9 732 151 9 211 chr11 128785287 128785490 -21998063 + MLT1B LTR MaLR 31 273 -117 561 257 33 22 chr11 128785605 128785788 -21997765 + MLT1B LTR MaLR 279 463 -4 297 276 60 24 chr11 128785875 128786029 -21997524 - MIR SINE MIR -58 150 39 560 280 12 0 chr11 128786156 128786324 -21997229 + MER5B DNA MER1_type 5 174 -4 2124 126 29 42 chr11 128786619 128786656 -21996897 - THE1C LTR MaLR 0 375 339 1835 118 50 0 chr11 128786656 128786936 -21996617 + AluSx SINE Alu 3 296 -16 2124 126 29 42 chr11 128786936 128787278 -21996275 - THE1C LTR MaLR -36 339 1 511 273 96 55 chr11 128787328 128787548 -21996005 - MIR SINE MIR -20 242 14 1770 132 0 69 chr11 128787612 128787930 -21995623 + AluJo SINE Alu 3 298 -14 243 170 0 0 chr11 128789917 128789964 -21993589 + (CA)n Simple_repeat Simple_repeat 1 47 0 246 264 0 0 chr11 128790933 128790986 -21992567 - L2 LINE L2 -976 2338 2286 2136 89 0 14 chr11 128791350 128791643 -21991910 - AluSx SINE Alu -23 289 1 12698 169 31 8 chr11 128791645 128793793 -21989760 - L1 LINE L1 -1034 5112 2893 754 234 6 6 chr11 128793793 128793968 -21989585 - L1PA16 LINE L1 -1 6165 5991 12698 169 31 8 chr11 128793968 128794384 -21989169 - L1 LINE L1 -3253 2893 2488 401 266 35 9 chr11 128794908 128795021 -21988532 - L2 LINE L2 -3 3310 3195 612 225 0 0 chr11 128795303 128795463 -21988090 + CT-rich Low_complexity Low_complexity 2 161 0 690 200 6 11 chr11 128795480 128795660 -21987893 + CT-rich Low_complexity Low_complexity 2 180 0 282 241 0 0 chr11 128795661 128795715 -21987838 + polypyrimidine Low_complexity Low_complexity 4 57 0 * 404 237 23 40 chr11 128795699 128795937 -21987616 + (CCCTA)n Simple_repeat Simple_repeat 1 233 0 200 268 71 18 chr11 128796884 128796940 -21986613 - L2 LINE L2 -12 3260 3202 287 315 19 19 chr11 128797011 128797119 -21986434 - MIR SINE MIR -126 136 29 464 0 18 0 chr11 128797121 128797177 -21986376 + (TTTTG)n Simple_repeat Simple_repeat 1 57 0 2036 98 0 4 chr11 128797201 128797477 -21986076 - AluSc SINE Alu -34 275 1 246 228 0 18 chr11 128797826 128797883 -21985670 + CT-rich Low_complexity Low_complexity 3 58 0 24 0 0 0 chr11 128798313 128798337 -21985216 + AT_rich Low_complexity Low_complexity 1 24 0 2309 75 0 0 chr11 128798339 128798633 -21984920 + AluY SINE Alu 1 294 -17 612 211 32 0 chr11 128798705 128798828 -21984725 + L2 LINE L2 3187 3313 0 2039 119 0 0 chr11 128798858 128799151 -21984402 + AluSx SINE Alu 10 302 -10 282 276 153 102 chr11 128799491 128799566 -21983987 - MIR SINE MIR -45 217 147 2039 116 10 3 chr11 128799566 128799869 -21983684 + AluSq SINE Alu 1 305 -8 1969 139 0 13 chr11 128799871 128800181 -21983372 + AluSp SINE Alu 1 306 -7 282 276 153 102 chr11 128800181 128800298 -21983255 - MIR SINE MIR -115 147 12 183 143 114 0 chr11 128800404 128800439 -21983114 - L2 LINE L2 -3 3269 3231 266 294 96 29 chr11 128800942 128801078 -21982475 - MIR3 SINE MIR -30 178 34 205 214 54 0 chr11 128801921 128801977 -21981576 + L2 LINE L2 3255 3313 0 457 281 7 36 chr11 128801980 128802119 -21981434 - MIR3 SINE MIR -54 154 20 2033 114 0 0 chr11 128802260 128802569 -21980984 + AluSx SINE Alu 1 309 0 2215 99 0 0 chr11 128803841 128804145 -21979408 + AluSx SINE Alu 1 304 -8 2211 101 0 0 chr11 128804996 128805293 -21978260 - AluSq SINE Alu -16 297 1 199 286 8 105 chr11 128805812 128805945 -21977608 - L2 LINE L2 -208 3064 2945 2284 93 0 3 chr11 128806332 128806644 -21976909 + AluSq SINE Alu 1 311 -2 227 276 0 0 chr11 128806863 128806921 -21976632 + L2 LINE L2 3206 3263 -9 245 370 11 0 chr11 128806986 128807078 -21976475 + MIR SINE MIR 59 151 -111 243 315 62 20 chr11 128807517 128807663 -21975890 - MIR3 SINE MIR -27 181 30 2623 52 0 0 chr11 128807908 128808216 -21975337 - AluY SINE Alu -2 309 2 211 295 200 29 chr11 128808425 128808635 -21974918 - L3 LINE CR1 -191 1386 1141 358 271 201 0 chr11 128808668 128808812 -21974741 - MIR SINE MIR -28 234 62 1853 166 3 0 chr11 128808950 128809240 -21974313 - AluSx SINE Alu -1 311 21 350 268 134 0 chr11 128809284 128809396 -21974157 + MIR SINE MIR 60 186 -76 2237 118 0 7 chr11 128811895 128812213 -21971340 + AluSx SINE Alu 1 316 0 2864 179 39 65 chr11 128812470 128812715 -21970838 + MLT1E2 LTR MaLR 4 254 -372 2402 110 0 0 chr11 128812715 128813024 -21970529 + AluSp SINE Alu 1 309 -4 2864 179 39 65 chr11 128813024 128813414 -21970139 + MLT1E2 LTR MaLR 254 623 -3 1662 176 30 21 chr11 128813487 128813816 -21969737 - MLT1A1 LTR MaLR -33 332 1 260 321 9 27 chr11 128814837 128814949 -21968604 + G-rich Low_complexity Low_complexity 1 110 0 2417 100 7 0 chr11 128815728 128816038 -21967515 - AluSx SINE Alu 0 312 1 351 0 0 0 chr11 128816146 128816185 -21967368 + (TG)n Simple_repeat Simple_repeat 2 40 0 430 311 115 63 chr11 128816208 128816764 -21966789 - MLT1K LTR MaLR -2 586 2 996 172 31 0 chr11 128817425 128817553 -21966000 - AluJo SINE Alu -60 252 116 192 97 0 0 chr11 128817553 128817584 -21965969 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 996 172 31 0 chr11 128817584 128817618 -21965935 - AluJo SINE Alu -196 116 85 643 96 0 139 chr11 128817620 128817675 -21965878 - AluJb SINE Alu -133 179 145 2095 119 0 7 chr11 128817675 128817987 -21965566 - AluSg SINE Alu 0 310 1 643 96 0 139 chr11 128817987 128818045 -21965508 - AluJb SINE Alu -167 145 81 353 274 0 12 chr11 128818045 128818129 -21965424 + MIR SINE MIR 66 148 -114 231 305 0 0 chr11 128818205 128818264 -21965289 - L2 LINE L2 -20 3252 3194 233 325 108 0 chr11 128818416 128818536 -21965017 - L2 LINE L2 -221 3051 2919 221 83 28 0 chr11 128819193 128819229 -21964324 + (TTA)n Simple_repeat Simple_repeat 1 37 0 412 295 7 36 chr11 128819230 128819369 -21964184 + L2 LINE L2 3176 3310 -3 219 125 0 0 chr11 128819371 128819411 -21964142 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 368 278 15 23 chr11 128819442 128819575 -21963978 - MIR3 SINE MIR -63 145 14 3580 55 0 28 chr11 128821000 128821457 -21962096 - MLT2A1 LTR ERVL 0 444 1 288 276 45 60 chr11 128821638 128821772 -21961781 - MIR SINE MIR -96 166 35 475 302 150 40 chr11 128822729 128823103 -21960450 + L2 LINE L2 2804 3218 -54 401 299 91 26 chr11 128825034 128825188 -21958365 - MIR SINE MIR -90 172 9 204 40 0 0 chr11 128825208 128825233 -21958320 + (TGGGGG)n Simple_repeat Simple_repeat 5 29 0 255 301 124 26 chr11 128826117 128826270 -21957283 + MIR SINE MIR 23 190 -72 215 270 135 34 chr11 128828361 128828450 -21955103 - MIR SINE MIR -90 172 75 513 192 0 58 chr11 128832191 128832311 -21951242 - MER94 DNA DNA -7 127 15 450 281 97 118 chr11 128833682 128834055 -21949498 - L2 LINE L2 0 3272 2908 392 265 152 8 chr11 128834511 128834643 -21948910 + MIR SINE MIR 110 260 -2 1978 163 0 0 chr11 128834951 128835245 -21948308 - AluJb SINE Alu -18 294 1 311 311 47 67 chr11 128835463 128835656 -21947897 + L3 LINE CR1 792 980 -597 2447 102 0 3 chr11 128835656 128835970 -21947583 + AluSq SINE Alu 1 313 0 24 32 0 0 chr11 128836119 128836150 -21947403 + AT_rich Low_complexity Low_complexity 1 31 0 1434 142 32 9 chr11 128836158 128836377 -21947176 + AluJo SINE Alu 1 224 -88 324 282 308 0 chr11 128836407 128836602 -21946951 + L3 LINE CR1 1003 1257 -320 2668 143 2 45 chr11 128836773 128837048 -21946505 + L1PB4 LINE L1 5686 5932 -224 2032 134 0 33 chr11 128837048 128837353 -21946200 + AluSx SINE Alu 3 297 -15 2668 143 2 45 chr11 128837353 128837567 -21945986 + L1PB4 LINE L1 5932 6154 -2 193 320 27 13 chr11 128837935 128838010 -21945543 + L3 LINE CR1 1497 1572 -5 288 115 0 154 chr11 128838092 128838170 -21945383 + L3 LINE CR1 1510 1575 -2 405 0 0 0 chr11 128838350 128838395 -21945158 + (CA)n Simple_repeat Simple_repeat 1 45 0 449 198 115 83 chr11 128839917 128840040 -21943513 - MIR SINE MIR -5 257 126 2573 77 0 0 chr11 128840040 128840352 -21943201 + AluSq SINE Alu 1 312 -1 449 198 115 83 chr11 128840352 128840385 -21943168 - MIR SINE MIR -136 126 96 2152 110 11 0 chr11 128841165 128841447 -21942106 + AluSx SINE Alu 1 285 -27 324 0 0 0 chr11 128841447 128841483 -21942070 + (CA)n Simple_repeat Simple_repeat 2 37 0 231 295 98 31 chr11 128841729 128841837 -21941716 + MIR SINE MIR 35 149 -64 610 224 48 0 chr11 128842252 128842377 -21941176 - FLAM_A SINE Alu -2 131 1 367 120 0 27 chr11 128842383 128842458 -21941095 - L1MB7 LINE L1 -9 6175 6103 999 100 23 0 chr11 128842964 128843127 -21940426 + AluSg/x SINE Alu 150 315 0 247 196 28 131 chr11 128843321 128843428 -21940125 + FLAM_C SINE Alu 35 130 -3 569 289 131 23 chr11 128843670 128843975 -21939578 + MLT1J1 LTR MaLR 1 338 -108 386 285 58 35 chr11 128844425 128844597 -21938956 - L1ME LINE L1 -362 5800 5625 4196 135 69 48 chr11 128844731 128845700 -21937853 + L1MB7 LINE L1 5202 6184 0 2213 104 21 0 chr11 128845711 128846000 -21937553 + AluSg SINE Alu 1 295 -15 2145 188 73 11 chr11 128846003 128846455 -21937098 - MLT1F LTR MaLR -59 483 4 933 212 159 4 chr11 128846485 128846711 -21936842 - MIR SINE MIR 0 262 2 1838 125 98 11 chr11 128846791 128847078 -21936475 + AluSx SINE Alu 1 312 0 482 283 93 27 chr11 128847144 128847673 -21935880 - L1ME LINE L1 -762 5384 4910 24 53 0 0 chr11 128847922 128847960 -21935593 + AT_rich Low_complexity Low_complexity 1 38 0 2255 109 16 0 chr11 128848459 128848762 -21934791 + AluSg SINE Alu 1 308 -2 458 336 160 50 chr11 128848942 128850073 -21933480 - L2 LINE L2 0 3272 1983 367 300 112 9 chr11 128850073 128850296 -21933257 + L2 LINE L2 1719 1964 -1350 366 326 120 33 chr11 128850348 128850624 -21932929 + L2 LINE L2 2546 2845 -469 250 367 36 82 chr11 128850679 128851009 -21932544 + L2 LINE L2 2907 3221 -51 2375 84 3 7 chr11 128851099 128851396 -21932157 + AluSq SINE Alu 1 296 -17 316 306 83 39 chr11 128851593 128851700 -21931853 + MIR3 SINE MIR 16 136 -72 2524 60 0 10 chr11 128851700 128851998 -21931555 - AluY SINE Alu -16 295 1 316 306 83 39 chr11 128851998 128852070 -21931483 + MIR3 SINE MIR 136 203 -5 823 180 0 0 chr11 128852553 128852681 -21930872 - FLAM_A SINE Alu -5 128 1 235 270 0 16 chr11 128852683 128852746 -21930807 + L1MEd LINE L1 248 309 -5810 444 278 35 11 chr11 128852749 128852925 -21930628 + L1ME LINE L1 10 189 -5881 1555 231 52 63 chr11 128852948 128853596 -21929957 + L1ME LINE L1 260 900 -5170 1162 171 37 30 chr11 128853670 128853792 -21929761 + L1ME LINE L1 2569 2689 -3391 2058 141 3 7 chr11 128853792 128854098 -21929455 - AluJb SINE Alu -7 305 1 1162 171 37 30 chr11 128854098 128854273 -21929280 + L1ME LINE L1 2689 2868 -3212 1094 226 29 40 chr11 128854258 128854607 -21928946 + L1ME LINE L1 3848 4192 -1888 * 778 182 74 67 chr11 128854659 128854956 -21928597 + L1MEd LINE L1 624 922 -5197 3024 165 127 4 chr11 128854956 128855678 -21927875 + Charlie1 DNA MER1_type 1915 2725 -36 1708 170 61 0 chr11 128855678 128855955 -21927598 + AluSx SINE Alu 1 294 -18 2132 88 4 4 chr11 128856001 128856274 -21927279 + AluSx SINE Alu 21 293 -19 623 275 48 6 chr11 128856324 128856491 -21927062 - L2 LINE L2 -1710 1604 1431 2032 114 23 33 chr11 128857052 128857351 -21926202 - AluSx SINE Alu -16 296 1 2401 99 0 13 chr11 128858329 128858641 -21924912 - AluSx SINE Alu -2 310 3 851 265 45 20 chr11 128859932 128860177 -21923376 - MIR SINE MIR -3 259 9 1964 96 54 0 chr11 128860821 128861101 -21922452 - AluSx SINE Alu -17 295 1 21 0 0 0 chr11 128861456 128861477 -21922076 + AT_rich Low_complexity Low_complexity 1 21 0 269 282 0 0 chr11 128861564 128861635 -21921918 + L1ME4a LINE L1 5569 5639 -482 387 239 26 71 chr11 128861660 128861815 -21921738 + L1ME4a LINE L1 5625 5772 -349 263 311 74 15 chr11 128861965 128862100 -21921453 + L1ME4a LINE L1 5966 6108 -13 305 244 43 89 chr11 128863247 128863431 -21920122 - MIR SINE MIR -79 183 19 689 260 125 10 chr11 128863640 128863840 -21919713 - MIR SINE MIR -15 247 25 553 282 172 11 chr11 128865676 128865949 -21917604 - L3 LINE CR1 -1 1576 1260 593 313 70 0 chr11 128865959 128866160 -21917393 - MIR SINE MIR -1 261 47 750 265 139 5 chr11 128866237 128866452 -21917101 + MIR SINE MIR 17 260 -2 270 316 0 0 chr11 128866535 128866611 -21916942 - L3 LINE CR1 -490 1087 1012 1956 141 0 0 chr11 128866655 128866961 -21916592 + AluJb SINE Alu 1 306 -6 2346 82 7 0 chr11 128867061 128867365 -21916188 + AluY SINE Alu 1 306 -5 1540 176 7 4 chr11 128867451 128867758 -21915795 + AluJb SINE Alu 12 319 0 1127 273 117 16 chr11 128867770 128868334 -21915219 + L1ME4a LINE L1 5500 6120 -1 284 343 38 0 chr11 128868355 128868460 -21915093 - L3 LINE CR1 -1226 351 243 2111 98 0 38 chr11 128868461 128868776 -21914777 + AluY SINE Alu 1 303 -8 2179 97 3 19 chr11 128869509 128869818 -21913735 + AluSx SINE Alu 1 304 -8 533 315 67 89 chr11 128870033 128870231 -21913322 + L2 LINE L2 2770 2971 -342 2521 50 0 0 chr11 128870231 128870533 -21913020 - AluY SINE Alu -9 302 1 1592 169 0 4 chr11 128870539 128870806 -21912747 - AluJb SINE Alu -18 294 29 533 315 67 89 chr11 128870806 128871152 -21912401 + L2 LINE L2 2976 3312 -1 615 230 0 33 chr11 128871239 128871391 -21912162 - MIR SINE MIR -82 180 34 1669 182 57 32 chr11 128871541 128871942 -21911611 - MLT1C LTR MaLR -4 463 53 317 272 9 35 chr11 128871993 128872107 -21911446 + MIR SINE MIR 146 256 -6 207 100 0 0 chr11 128872939 128872969 -21910584 + (CCCA)n Simple_repeat Simple_repeat 3 32 0 305 291 219 26 chr11 128873063 128873264 -21910289 + MIR SINE MIR 22 262 0 430 259 92 0 chr11 128873580 128873711 -21909842 - MIR SINE MIR -51 211 69 1085 173 99 11 chr11 128873820 128874092 -21909461 - L1MA9 LINE L1 0 6312 6017 2202 93 10 0 chr11 128874918 128875218 -21908335 + AluSg SINE Alu 1 303 -7 1355 95 0 0 chr11 128875218 128875397 -21908156 + AluSg/x SINE Alu 134 312 0 266 114 45 0 chr11 128875420 128875464 -21908089 + MIR SINE MIR 105 150 -112 195 74 0 0 chr11 128875477 128875504 -21908049 - MIR SINE MIR -112 150 124 2052 102 13 10 chr11 128877116 128877419 -21906134 + AluSx SINE Alu 1 304 -8 869 242 149 39 chr11 128877705 128878061 -21905492 + L2 LINE L2 2919 3313 0 240 200 17 50 chr11 128879062 128879122 -21904431 + MIR SINE MIR 193 250 -12 1266 20 7 0 chr11 128879635 128879782 -21903771 + L1PA5 LINE L1 5996 6143 -11 28 79 0 0 chr11 128879782 128879845 -21903708 + AT_rich Low_complexity Low_complexity 1 63 0 446 240 39 10 chr11 128879860 128879964 -21903589 + HAL1 LINE L1 234 340 -2167 474 249 47 47 chr11 128879990 128880159 -21903394 + HAL1 LINE L1 480 648 -1859 409 289 29 0 chr11 128880268 128880372 -21903181 - HAL1 LINE L1 -2167 340 234 2890 205 101 68 chr11 128880391 128881468 -21902085 + HAL1 LINE L1 671 1787 -720 2390 69 0 3 chr11 128881468 128881774 -21901779 + AluSg SINE Alu 1 305 -5 2890 205 101 68 chr11 128881774 128881802 -21901751 + HAL1 LINE L1 1787 1813 -694 180 0 0 0 chr11 128883598 128883618 -21899935 + (A)n Simple_repeat Simple_repeat 1 20 0 808 293 120 36 chr11 128883618 128883977 -21899576 - L3 LINE CR1 -11 1566 1178 184 328 117 16 chr11 128885838 128885966 -21897587 - L2 LINE L2 -42 3271 3131 616 234 78 0 chr11 128886352 128886493 -21897060 + MIR3 SINE MIR 57 208 0 29 60 0 0 chr11 128887652 128887702 -21895851 + GC_rich Low_complexity Low_complexity 1 50 0 212 296 111 15 chr11 128892875 128893010 -21890543 + L2 LINE L2 2531 2678 -636 231 167 0 0 chr11 128893149 128893185 -21890368 - MLT1J LTR MaLR 0 511 476 342 232 0 91 chr11 128893186 128893285 -21890268 - L1MC4 LINE L1 -1339 6703 6614 361 188 0 0 chr11 128893296 128893360 -21890193 - MLT1J LTR MaLR -321 190 127 1657 211 43 11 chr11 128893389 128893789 -21889764 - MLT1J LTR MaLR -52 459 1 227 253 172 30 chr11 128893940 128894039 -21889514 + L2 LINE L2 3201 3313 0 * 300 327 91 0 chr11 128894036 128894146 -21889407 - MIR3 SINE MIR -52 156 37 511 365 49 18 chr11 128894234 128894560 -21888993 - L2 LINE L2 -650 2664 2329 483 282 23 35 chr11 128894829 128895003 -21888550 - L2 LINE L2 -1004 2310 2139 1894 153 0 7 chr11 128895012 128895319 -21888234 + AluSx SINE Alu 1 305 -7 448 304 148 25 chr11 128895366 128895603 -21887950 + MLT1J2 LTR MaLR 67 332 -118 991 219 137 121 chr11 128895664 128895949 -21887604 - MLT1J LTR MaLR 0 511 232 2327 83 3 0 chr11 128895949 128896250 -21887303 - AluSp SINE Alu -11 302 1 991 219 137 121 chr11 128896250 128896390 -21887163 - MLT1J LTR MaLR -279 232 74 3588 143 20 36 chr11 128896390 128897049 -21886504 + L1MB8 LINE L1 5525 6172 -6 991 219 137 121 chr11 128897049 128897125 -21886428 - MLT1J LTR MaLR -437 74 1 1960 113 38 0 chr11 128897227 128897520 -21886033 - AluSx SINE Alu -8 304 1 3485 171 39 38 chr11 128897551 128897944 -21885609 + L1MB3 LINE L1 5444 5840 -343 2183 128 0 0 chr11 128897944 128898256 -21885297 + AluSx SINE Alu 1 312 0 3485 171 39 38 chr11 128898256 128898600 -21884953 + L1MB3 LINE L1 5840 6182 -1 284 245 236 9 chr11 128898760 128898866 -21884687 + MLT2E LTR ERVL 43 172 -456 347 254 0 53 chr11 128899023 128899137 -21884416 + LTR33A LTR ERVL 416 523 0 1791 237 75 55 chr11 128899262 128899973 -21883580 - L1MC4 LINE L1 -151 7891 7162 1643 125 28 103 chr11 128899973 128900294 -21883259 + AluJb SINE Alu 1 297 -5 1791 237 75 55 chr11 128900294 128900357 -21883196 - L1MC4 LINE L1 -880 7162 7102 1964 98 9 44 chr11 128900774 128901090 -21882463 - AluSx SINE Alu -5 307 3 1568 123 3 110 chr11 128901391 128901744 -21881809 - AluJb SINE Alu 0 319 1 376 215 154 13 chr11 128901783 128901932 -21881621 + L1MEd LINE L1 1148 1317 -5055 457 54 0 0 chr11 128901938 128901994 -21881559 + Alu SINE Alu 3 58 -260 2144 116 0 0 chr11 128901999 128902301 -21881252 + AluSx SINE Alu 1 302 -10 570 272 98 41 chr11 128902301 128902781 -21880772 + L1MEd LINE L1 1207 1731 -4653 250 143 0 0 chr11 128902925 128902967 -21880586 - MER116 DNA Mariner -38 42 1 1566 139 36 18 chr11 128903004 128903311 -21880242 - AluJo SINE Alu 0 312 1 352 244 23 35 chr11 128903313 128903399 -21880154 + L2 LINE L2 3224 3308 -5 1461 272 135 44 chr11 128903666 128904203 -21879350 + HAL1 LINE L1 1 611 -1896 1885 143 14 0 chr11 128904203 128904490 -21879063 + AluJo SINE Alu 1 291 -21 1461 272 135 44 chr11 128904490 128904613 -21878940 + HAL1 LINE L1 611 721 -1786 280 282 77 28 chr11 128904686 128904721 -21878832 - L1MD3 LINE L1 -399 7596 7564 1898 138 7 3 chr11 128904721 128905025 -21878528 - AluJo SINE Alu -7 305 1 280 282 77 28 chr11 128905025 128905374 -21878179 - L1MD3 LINE L1 -431 7564 7098 1976 107 22 0 chr11 128905421 128905723 -21877830 + AluSx SINE Alu 4 311 0 754 198 0 0 chr11 128905834 128905960 -21877593 - FLAM_C SINE Alu -17 126 1 736 218 71 59 chr11 128906169 128906273 -21877280 + MIR SINE MIR 21 122 -140 1782 164 3 22 chr11 128906273 128906591 -21876962 - AluJb SINE Alu 0 312 1 736 218 71 59 chr11 128906591 128906725 -21876828 + MIR SINE MIR 122 262 0 436 271 64 91 chr11 128906729 128906988 -21876565 + L1MEd LINE L1 2424 2668 -3714 2096 121 0 16 chr11 128906988 128907301 -21876252 + AluSg SINE Alu 1 308 -2 436 271 64 91 chr11 128907301 128907480 -21876073 + L1MEd LINE L1 2668 2850 -3532 380 276 163 25 chr11 128908085 128908288 -21875265 - MIR SINE MIR -10 252 22 1945 142 9 49 chr11 128909197 128909522 -21874031 - AluSx SINE Alu 0 312 1 262 224 94 12 chr11 128909522 128909607 -21873946 - L1ME LINE L1 -383 5738 5647 2157 106 10 7 chr11 128909608 128909619 -21873934 - AluSx SINE Alu 0 312 303 181 77 0 0 chr11 128909619 128909645 -21873908 + (TTTA)n Simple_repeat Simple_repeat 2 164 0 2157 106 10 7 chr11 128909645 128909926 -21873627 - AluSx SINE Alu -9 303 1 3133 236 116 39 chr11 128910100 128910204 -21873349 + HAL1 LINE L1 1 95 -2412 2147 126 16 10 chr11 128910204 128910514 -21873039 + AluJb SINE Alu 1 312 0 3133 236 116 39 chr11 128910514 128910696 -21872857 + HAL1 LINE L1 95 261 -2246 795 237 5 11 chr11 128910696 128910886 -21872667 - MER91B DNA MER1_type -1 189 1 3133 236 116 39 chr11 128910886 128911349 -21872204 + HAL1 LINE L1 261 687 -1820 2555 73 0 0 chr11 128911349 128911650 -21871903 - AluY SINE Alu -10 301 1 3133 236 116 39 chr11 128911650 128912016 -21871537 + HAL1 LINE L1 687 1205 -1302 357 23 0 0 chr11 128912019 128912062 -21871491 + AluY SINE Alu 2 44 -257 228 165 72 0 chr11 128912066 128912163 -21871390 + (TA)n Simple_repeat Simple_repeat 2 105 0 399 277 30 0 chr11 128912166 128912267 -21871286 - L2 LINE L2 0 3313 3210 280 343 63 14 chr11 128912498 128912641 -21870912 + L3 LINE CR1 1310 1459 -118 199 236 146 0 chr11 128912652 128912707 -21870846 - L2 LINE L2 0 3313 3251 1830 183 121 24 chr11 128912708 128913123 -21870430 - MLT1F LTR MaLR 0 542 88 1301 192 8 11 chr11 128914182 128914442 -21869111 + L1MB4 LINE L1 5472 5730 -450 723 144 20 14 chr11 128914430 128914576 -21868977 + L1MB4 LINE L1 6011 6157 -23 * 2179 145 3 0 chr11 128914609 128914920 -21868633 - AluJb SINE Alu 0 312 1 2029 115 14 4 chr11 128914935 128915214 -21868339 - AluSx SINE Alu 0 312 31 234 0 0 0 chr11 128915215 128915241 -21868312 + (A)n Simple_repeat Simple_repeat 1 26 0 2262 115 0 3 chr11 128916242 128916538 -21867015 - AluSx SINE Alu -17 295 1 524 286 72 92 chr11 128916538 128916985 -21866568 - LTR67 LTR ERVL -4 553 116 2075 162 8 6 chr11 128917099 128917463 -21866090 - MLT1A1 LTR MaLR 0 365 1 186 174 0 0 chr11 128917648 128917694 -21865859 + (TA)n Simple_repeat Simple_repeat 2 47 0 337 279 0 72 chr11 128917695 128917806 -21865747 - L1MC4 LINE L1 -1340 6702 6600 335 288 0 63 chr11 128917769 128917929 -21865624 + L1MC4 LINE L1 6589 6703 -1339 * 303 208 30 99 chr11 128917847 128917948 -21865605 - L1MC3 LINE L1 -1138 6647 6554 * 466 303 56 14 chr11 128917941 128918083 -21865470 + L1MC4 LINE L1 6556 6703 -1339 423 258 17 58 chr11 128918086 128918206 -21865347 + L1MC4 LINE L1 6589 6703 -1339 342 290 21 11 chr11 128918197 128918290 -21865263 - L1MC4 LINE L1 -1338 6704 6611 * 412 244 35 0 chr11 128918246 128918332 -21865221 + L1MC4 LINE L1 6615 6703 -1339 347 250 15 118 chr11 128918333 128918421 -21865132 - L1MC4 LINE L1 -1338 6704 6633 2506 64 6 13 chr11 128918421 128918734 -21864819 - AluSq SINE Alu -2 311 1 347 250 15 118 chr11 128918734 128918781 -21864772 - L1MC4 LINE L1 -1409 6633 6583 276 333 129 20 chr11 128919176 128919377 -21864176 - MIR SINE MIR -9 253 31 327 267 47 26 chr11 128920077 128920267 -21863286 + L2 LINE L2 3138 3313 0 228 122 0 0 chr11 128920689 128920730 -21862823 + (CTG)n Simple_repeat Simple_repeat 2 42 0 873 244 4 9 chr11 128921406 128921636 -21861917 + MLT2F LTR ERVL 139 367 -296 274 224 203 49 chr11 128922238 128922381 -21861172 - MIR3 SINE MIR -14 194 30 207 279 25 0 chr11 128923722 128923801 -21859752 + MIR SINE MIR 71 151 -57 1586 152 22 7 chr11 128923841 128924095 -21859458 + MER2 DNA MER2_type 1 261 -84 2184 125 0 0 chr11 128924095 128924391 -21859162 - AluSx SINE Alu -16 296 1 1586 152 22 7 chr11 128924391 128924406 -21859147 + MER2 DNA MER2_type 261 274 -71 827 160 0 0 chr11 128924416 128924541 -21859012 - FLAM_C SINE Alu -18 125 1 22 0 0 0 chr11 128924550 128924572 -21858981 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr11 128924572 128924592 -21858961 + (TA)n Simple_repeat Simple_repeat 2 21 0 2573 42 0 36 chr11 128924592 128924899 -21858654 - AluY SINE Alu -15 296 1 371 191 0 0 chr11 128924907 128924970 -21858583 + MER2 DNA MER2_type 282 344 -1 769 228 70 9 chr11 128925767 128925982 -21857571 + MIR SINE MIR 27 254 -8 207 279 139 0 chr11 128926630 128926709 -21856844 + MIR3 SINE MIR 82 171 -37 240 293 154 10 chr11 128927753 128927874 -21855679 + MIR SINE MIR 35 173 -65 243 0 0 0 chr11 128927921 128927948 -21855605 + (TC)n Simple_repeat Simple_repeat 2 28 0 1999 114 25 4 chr11 128927948 128928228 -21855325 - AluSx SINE Alu -26 286 1 253 325 77 18 chr11 128928474 128928643 -21854910 - MIR SINE MIR -54 208 30 234 191 21 0 chr11 128929743 128929790 -21853763 + GA-rich Low_complexity Low_complexity 2 49 0 195 215 62 31 chr11 128929872 128929937 -21853616 - MIR SINE MIR -60 148 82 365 280 77 48 chr11 128929990 128930158 -21853395 - MIR3 SINE MIR -21 187 15 2314 100 6 10 chr11 128930964 128931449 -21852104 - AluSx SINE Alu 0 312 1 2173 130 18 0 chr11 128931480 128931811 -21851742 - MER1B DNA MER1_type 0 337 1 483 252 45 0 chr11 128932024 128932135 -21851418 - MIR SINE MIR -75 187 72 215 184 0 0 chr11 128932994 128933032 -21850521 + MIR SINE MIR 110 147 -115 351 329 43 0 chr11 128933348 128933488 -21850065 + MIR SINE MIR 117 262 0 346 287 0 0 chr11 128933658 128933759 -21849794 - MIR SINE MIR -62 146 46 2317 107 0 10 chr11 128934275 128934583 -21848970 - AluSx SINE Alu -7 305 1 370 233 82 26 chr11 128938274 128938445 -21845108 + MIR SINE MIR 35 211 -51 329 224 63 81 chr11 128938531 128938705 -21844848 - MIR3 SINE MIR 0 208 38 204 262 113 78 chr11 128938823 128938964 -21844589 + MIR SINE MIR 18 163 -99 2050 183 69 25 chr11 128938993 128939441 -21844112 + MLT1D LTR MaLR 1 468 -37 1398 166 36 28 chr11 128941637 128941890 -21841663 - AluJo SINE Alu -57 255 1 2121 128 10 10 chr11 128942104 128942416 -21841137 - AluSx SINE Alu 0 312 1 530 48 68 0 chr11 128944082 128944185 -21839368 + (TA)n Simple_repeat Simple_repeat 2 111 0 192 217 0 0 chr11 128944728 128944774 -21838779 + A-rich Low_complexity Low_complexity 1 46 0 327 377 7 7 chr11 128946377 128946531 -21837022 - MIR SINE MIR -15 247 94 985 154 31 51 chr11 128947400 128947504 -21836049 + MER3 DNA MER1_type 1 101 -108 2256 61 20 102 chr11 128947504 128947846 -21835707 + AluYb8 SINE Alu 1 314 -4 985 154 31 51 chr11 128947846 128947936 -21835617 + MER3 DNA MER1_type 101 191 -18 1737 154 0 0 chr11 128948203 128948456 -21835097 + AluSx SINE Alu 50 302 -10 555 338 200 8 chr11 128949159 128949695 -21833858 + L2 LINE L2 2015 2653 -661 2176 116 41 0 chr11 128950212 128950504 -21833049 + AluSx SINE Alu 1 304 -8 331 329 106 14 chr11 128951900 128952107 -21831446 + MIR SINE MIR 3 228 -34 234 296 96 22 chr11 128952462 128952597 -21830956 + MIR3 SINE MIR 3 147 -61 1931 156 0 7 chr11 128953551 128953840 -21829713 + AluJo SINE Alu 1 287 -25 213 289 105 53 chr11 128953927 128954079 -21829474 + L2 LINE L2 3120 3279 -34 2302 108 16 0 chr11 128954282 128954589 -21828964 + AluSx SINE Alu 1 312 0 181 380 102 16 chr11 128954648 128954893 -21828660 + L2 LINE L2 2830 3095 -177 547 202 60 36 chr11 128955232 128955400 -21828153 + MIR SINE MIR 67 238 -24 2620 53 0 0 chr11 128955402 128955704 -21827849 + AluY SINE Alu 1 302 -9 622 236 229 22 chr11 128955753 128956067 -21827486 - L3 LINE CR1 -53 1524 1146 240 301 124 18 chr11 128956822 128956935 -21826618 - MIR3 SINE MIR -54 154 30 321 89 0 0 chr11 128957769 128957814 -21825739 + (CTG)n Simple_repeat Simple_repeat 3 47 0 490 234 69 74 chr11 128959192 128959367 -21824186 - MER5A DNA MER1_type 0 189 16 222 281 247 7 chr11 128959387 128959452 -21824101 - MER5A DNA MER1_type 0 189 141 2417 72 7 0 chr11 128959452 128959744 -21823809 + AluSg SINE Alu 1 294 -16 222 281 247 7 chr11 128959744 128959824 -21823729 - MER5A DNA MER1_type -48 141 9 672 256 184 14 chr11 128960095 128960204 -21823349 - MIR SINE MIR 0 262 173 1897 153 67 22 chr11 128960204 128960563 -21822990 + THE1C LTR MaLR 1 375 0 672 256 184 14 chr11 128960563 128960676 -21822877 - MIR SINE MIR -89 173 2 2245 89 3 17 chr11 128962284 128962586 -21820967 + AluSx SINE Alu 2 299 -13 1452 169 88 4 chr11 128962751 128963024 -21820529 - AluJb SINE Alu -16 296 1 187 272 56 111 chr11 128965205 128965367 -21818186 - L3b LINE CR1 -93 1490 1338 2363 91 0 0 chr11 128965937 128966235 -21817318 - AluSg SINE Alu -12 298 1 533 295 195 24 chr11 128970110 128970408 -21813145 - L2 LINE L2 -1 3271 2923 207 0 0 0 chr11 128970783 128970806 -21812747 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 1236 327 126 37 chr11 128970869 128971798 -21811755 - L2 LINE L2 -434 2880 1869 824 152 104 126 chr11 128972001 128972271 -21811282 + MER5C DNA MER1_type 7 270 -54 222 37 0 0 chr11 128972364 128972391 -21811162 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 184 225 0 0 chr11 128977261 128977301 -21806252 + MIR SINE MIR 109 148 -114 717 244 85 15 chr11 128977373 128977574 -21805979 - MIR SINE MIR -46 216 2 768 325 58 38 chr11 128977642 128977883 -21805670 + L2 LINE L2 2573 2808 -505 2218 97 3 7 chr11 128977883 128978182 -21805371 - AluSx SINE Alu -14 298 1 768 325 58 38 chr11 128978182 128978637 -21804916 + L2 LINE L2 2808 3313 0 24 0 0 0 chr11 128978679 128978703 -21804850 + AT_rich Low_complexity Low_complexity 1 24 0 345 271 229 16 chr11 128978814 128979002 -21804551 - MIR SINE MIR -31 231 4 2216 103 0 0 chr11 128980344 128980670 -21802883 + AluSx SINE Alu 1 326 0 225 261 0 14 chr11 128981182 128981251 -21802302 + GA-rich Low_complexity Low_complexity 3 70 0 451 271 168 14 chr11 128981283 128981497 -21802056 - MIR SINE MIR 0 262 16 2338 99 0 0 chr11 128983150 128983444 -21800109 + AluSx SINE Alu 1 294 -18 1469 165 30 56 chr11 128983698 128983849 -21799704 - AluJo SINE Alu -16 296 155 1860 87 11 47 chr11 128983849 128984124 -21799429 - AluY SINE Alu -12 299 35 1469 165 30 56 chr11 128984124 128984275 -21799278 - AluJo SINE Alu -157 155 2 976 171 98 73 chr11 128985245 128985491 -21798062 + MIR SINE MIR 10 261 -1 877 152 0 36 chr11 128986622 128986760 -21796793 + FLAM_C SINE Alu 1 133 0 2104 116 20 0 chr11 128986834 128987127 -21796426 + AluSx SINE Alu 1 299 -13 253 287 88 29 chr11 128987175 128987311 -21796242 - L2 LINE L2 -5 3308 3165 324 323 6 63 chr11 128988605 128988763 -21794790 + MIR SINE MIR 48 196 -66 1603 192 3 14 chr11 128988793 128989080 -21794473 + AluJo SINE Alu 13 296 -16 25 23 0 23 chr11 128989083 128989113 -21794440 + AT_rich Low_complexity Low_complexity 1 31 -11 1960 121 13 23 chr11 128989113 128989418 -21794135 + AluJo SINE Alu 1 302 -10 25 23 0 23 chr11 128989418 128989430 -21794123 + AT_rich Low_complexity Low_complexity 31 42 0 481 241 275 27 chr11 128989541 128989957 -21793596 - L2 LINE L2 0 3313 2742 236 355 73 9 chr11 128989982 128990092 -21793461 - L2 LINE L2 -17 3296 3180 570 173 59 169 chr11 128990430 128990545 -21793008 - MER112 DNA MER1_type -49 211 85 1454 161 75 36 chr11 128990545 128990824 -21792729 + AluJo SINE Alu 1 290 -22 570 173 59 169 chr11 128990824 128990836 -21792717 - MER112 DNA MER1_type -175 85 73 777 197 0 0 chr11 128990836 128990953 -21792600 + FLAM_A SINE Alu 3 119 -14 570 173 59 169 chr11 128990953 128991061 -21792492 - MER112 DNA MER1_type -187 73 1 225 360 0 13 chr11 128991084 128991159 -21792394 - L2 LINE L2 -541 2773 2700 654 324 176 21 chr11 128991231 128991861 -21791692 - L2 LINE L2 -604 2710 1983 5798 157 23 14 chr11 128991861 128992885 -21790668 + L1MC1 LINE L1 5286 6319 -14 1636 176 25 4 chr11 128992898 128993176 -21790377 + AluJb SINE Alu 5 288 -24 180 267 99 46 chr11 128993190 128993321 -21790232 - L2 LINE L2 -1299 2015 1878 * 293 309 148 27 chr11 128993320 128993469 -21790084 + L2 LINE L2 1740 1906 -1408 1459 202 75 195 chr11 128993503 128994929 -21788624 + L2 LINE L2 1889 3154 -159 22 0 0 0 chr11 128995217 128995239 -21788314 + AT_rich Low_complexity Low_complexity 1 22 0 274 217 153 70 chr11 128995397 128995554 -21787999 - MIR SINE MIR -10 252 83 2307 109 0 3 chr11 128996243 128996545 -21787008 + AluSx SINE Alu 1 301 -11 1980 107 24 3 chr11 128997107 128997398 -21786155 + AluY SINE Alu 1 297 -14 8317 13 6 0 chr11 128997475 128998935 -21784618 - L1PA3 LINE L1 -2 6153 4690 324 363 181 12 chr11 128999328 129000096 -21783457 + L2 LINE L2 1958 2855 -459 303 289 40 69 chr11 129000131 129000304 -21783249 + L2 LINE L2 2932 3099 -173 2506 79 0 0 chr11 129000361 129000664 -21782889 - AluSp SINE Alu -10 303 1 1648 172 10 24 chr11 129003089 129003385 -21780168 - AluJo SINE Alu -20 292 1 31 68 0 0 chr11 129004188 129004247 -21779306 + AT_rich Low_complexity Low_complexity 1 59 0 860 136 0 0 chr11 129004259 129004377 -21779176 - FLAM_C SINE Alu -15 118 1 577 208 16 8 chr11 129004390 129004515 -21779038 - L1MB8 LINE L1 -22 6156 6031 4452 147 23 28 chr11 129004539 129005508 -21778045 - L1MB7 LINE L1 -120 6064 5101 23 33 0 0 chr11 129006835 129006865 -21776688 + AT_rich Low_complexity Low_complexity 1 30 0 2079 112 7 7 chr11 129006865 129007161 -21776392 + AluSq SINE Alu 2 297 -16 655 280 86 38 chr11 129007325 129007693 -21775860 + L1M4 LINE L1 4881 5275 -871 1743 174 0 11 chr11 129007693 129007980 -21775573 + AluJo SINE Alu 1 284 -28 655 280 86 38 chr11 129007980 129008054 -21775499 + L1M4 LINE L1 5275 5344 -802 * 1523 229 100 61 chr11 129008041 129008712 -21774841 + L1ME4a LINE L1 5254 5950 -220 303 217 121 24 chr11 129009165 129009248 -21774305 + L2 LINE L2 3208 3298 -15 898 147 14 0 chr11 129010488 129010631 -21772922 + FRAM SINE Alu 1 145 -31 822 90 23 15 chr11 129012245 129012378 -21771175 + AluY SINE Alu 160 293 -18 332 212 40 116 chr11 129012406 129012604 -21770949 + L1ME4a LINE L1 5927 6109 -12 729 129 0 0 chr11 129014657 129014773 -21768780 + AluSg/x SINE Alu 190 305 -4 2226 108 20 0 chr11 129015064 129015360 -21768193 - AluSx SINE Alu -10 302 1 397 257 55 93 chr11 129015401 129015584 -21767969 - L2 LINE L2 -68 3204 3029 366 23 0 0 chr11 129015982 129016025 -21767528 + (TG)n Simple_repeat Simple_repeat 2 44 0 624 126 136 0 chr11 129016065 129016168 -21767385 - FLAM_C SINE Alu -15 118 2 313 250 73 65 chr11 129016424 129016548 -21767005 + L1MC4 LINE L1 6616 6740 -1302 2550 39 0 0 chr11 129017370 129017655 -21765898 - AluY SINE Alu -14 297 13 1068 153 0 23 chr11 129017669 129017680 -21765873 - AluJo/FRAM SINE Alu -4 308 298 821 182 0 0 chr11 129017680 129017812 -21765741 + FLAM_C SINE Alu 1 132 -1 1068 153 0 23 chr11 129017812 129017977 -21765576 - AluJo/FRAM SINE Alu -14 298 136 1523 193 8 4 chr11 129018285 129018550 -21765003 + AluJo SINE Alu 1 266 -46 547 172 13 32 chr11 129018572 129018729 -21764824 + GA-rich Low_complexity Low_complexity 4 157 0 648 130 8 30 chr11 129018927 129019058 -21764495 - L1MA7 LINE L1 0 6291 6164 234 0 0 0 chr11 129021350 129021376 -21762177 + (A)n Simple_repeat Simple_repeat 1 26 0 2060 126 3 0 chr11 129021501 129021786 -21761767 - AluSx SINE Alu -26 286 1 2212 90 3 47 chr11 129022570 129022892 -21760661 + AluSx SINE Alu 1 308 -4 216 0 0 0 chr11 129023015 129023039 -21760514 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2082 189 64 56 chr11 129023457 129023585 -21759968 + MLT1D LTR MaLR 1 126 -379 1384 163 171 0 chr11 129023585 129023842 -21759711 + AluSx SINE Alu 1 301 -11 2082 189 64 56 chr11 129023842 129024211 -21759342 + MLT1D LTR MaLR 126 502 -3 2215 118 7 0 chr11 129025313 129025609 -21757944 + AluSx SINE Alu 1 298 -14 774 200 9 60 chr11 129030581 129030796 -21752757 + L2 LINE L2 2427 2630 -684 878 173 27 0 chr11 129030832 129031058 -21752495 - L1MD2 LINE L1 0 6359 6079 1608 209 16 70 chr11 129031172 129031369 -21752184 - L1MD2 LINE L1 -280 6079 5873 1450 183 131 0 chr11 129031369 129031643 -21751910 - AluJb SINE Alu -2 310 1 1608 209 16 70 chr11 129031643 129031710 -21751843 - L1MD2 LINE L1 -486 5873 5804 2397 89 7 0 chr11 129031710 129032012 -21751541 - AluSg SINE Alu -6 304 1 1608 209 16 70 chr11 129032012 129032190 -21751363 - L1MD2 LINE L1 -555 5804 5660 542 200 0 36 chr11 129032190 129032209 -21751344 - FRAM SINE Alu -148 164 146 189 0 0 0 chr11 129032209 129032230 -21751323 + (TC)n Simple_repeat Simple_repeat 1 21 0 542 200 0 36 chr11 129032230 129032320 -21751233 - FRAM SINE Alu -166 146 59 1079 297 106 28 chr11 129032341 129032862 -21750691 + L2 LINE L2 2687 3312 -1 1108 148 29 72 chr11 129033306 129033371 -21750182 + AluJo SINE Alu 82 148 -164 2227 108 0 16 chr11 129033371 129033677 -21749876 + AluSx SINE Alu 1 301 -11 1108 148 29 72 chr11 129033677 129033820 -21749733 + AluJo SINE Alu 148 281 -31 52 41 0 0 chr11 129033826 129033899 -21749654 + AT_rich Low_complexity Low_complexity 1 73 0 355 242 44 173 chr11 129034450 129034566 -21748987 + L2 LINE L2 2223 2352 -962 814 153 0 0 chr11 129034566 129034684 -21748869 + FLAM_C SINE Alu 1 118 -15 355 242 44 173 chr11 129034684 129034747 -21748806 + L2 LINE L2 2352 2421 -893 1909 162 13 10 chr11 129034747 129035049 -21748504 - AluSx SINE Alu -9 303 1 355 242 44 173 chr11 129035049 129035186 -21748367 + L2 LINE L2 2421 2499 -815 265 244 26 0 chr11 129035741 129035819 -21747734 + L1MC4a LINE L1 5883 5962 -1846 483 225 65 35 chr11 129036326 129036495 -21747058 + L1MC4a LINE L1 6563 6736 -1072 2095 114 4 0 chr11 129036495 129036775 -21746778 + AluSx SINE Alu 1 281 -31 372 94 0 0 chr11 129036776 129036829 -21746724 + (GGGGA)n Simple_repeat Simple_repeat 4 56 0 374 56 0 19 chr11 129037087 129037141 -21746412 + (GGAGA)n Simple_repeat Simple_repeat 4 56 0 819 128 0 0 chr11 129037179 129037320 -21746233 + (GGAGA)n Simple_repeat Simple_repeat 5 145 0 863 196 65 121 chr11 129037323 129037797 -21745756 + L1MC5 LINE L1 6733 7179 -782 2188 128 3 0 chr11 129037797 129038101 -21745452 - AluSg SINE Alu -5 305 1 863 196 65 121 chr11 129038101 129038130 -21745423 + L1MC5 LINE L1 7179 7208 -753 350 238 53 108 chr11 129038318 129038717 -21744836 + L1MC5 LINE L1 7310 7686 -275 2303 117 0 3 chr11 129038879 129039186 -21744367 - AluSx SINE Alu -6 306 1 22 56 0 0 chr11 129039442 129039478 -21744075 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr11 129039642 129039665 -21743888 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2351 69 0 0 chr11 129039673 129039961 -21743592 - AluY SINE Alu -23 288 1 283 313 30 0 chr11 129040873 129040940 -21742613 - L2 LINE L2 -17 3255 3187 1048 323 109 6 chr11 129041003 129041714 -21741839 - L2 LINE L2 -10 3303 2533 259 205 24 48 chr11 129041714 129041797 -21741756 - MER2 DNA MER2_type -1 344 264 241 360 56 17 chr11 129042260 129042493 -21741060 + L2 LINE L2 643 884 -2430 695 220 45 19 chr11 129042497 129042761 -21740792 - Charlie5 DNA MER1_type 0 2623 2353 285 197 30 0 chr11 129042762 129042828 -21740725 - Charlie5 DNA MER1_type -2414 198 131 434 270 58 7 chr11 129042854 129042991 -21740562 + MER77 LTR ERV1 54 197 -408 891 230 136 54 chr11 129043048 129043439 -21740114 + MER77 LTR ERV1 177 599 -6 411 190 146 17 chr11 129043526 129043607 -21739946 - Charlie5 DNA MER1_type -47 115 34 2357 72 0 0 chr11 129043607 129043897 -21739656 - AluY SINE Alu -7 304 15 411 190 146 17 chr11 129043897 129043957 -21739596 - Charlie5 DNA MER1_type -128 34 1 783 162 0 22 chr11 129044042 129044178 -21739375 - FLAM_C SINE Alu 0 133 1 190 353 80 60 chr11 129044212 129044713 -21738840 + L2 LINE L2 994 1504 -1810 1888 216 25 18 chr11 129044909 129045353 -21738200 - LTR40b LTR ERVL -15 447 1 2170 95 14 0 chr11 129045488 129045772 -21737781 + AluY SINE Alu 1 288 -23 307 94 87 0 chr11 129045772 129045899 -21737654 + (TA)n Simple_repeat Simple_repeat 1 138 0 255 326 97 11 chr11 129045929 129046104 -21737449 - L2 LINE L2 -1195 2119 1930 495 48 0 0 chr11 129046141 129046203 -21737350 + (TATG)n Simple_repeat Simple_repeat 2 63 0 2437 68 3 0 chr11 129046203 129046496 -21737057 - AluY SINE Alu -17 294 1 914 233 6 41 chr11 129046496 129046570 -21736983 - L1M4 LINE L1 -2697 4260 4185 2090 140 0 10 chr11 129046570 129046870 -21736683 - AluJb SINE Alu -15 297 1 914 233 6 41 chr11 129046870 129046913 -21736640 - L1M4 LINE L1 -2772 4185 4142 2015 152 3 0 chr11 129046913 129047209 -21736344 - AluJo SINE Alu -15 297 1 914 233 6 41 chr11 129047209 129047434 -21736119 - L1M4 LINE L1 -2815 4142 3929 309 236 9 0 chr11 129047440 129047546 -21736007 + L1M4 LINE L1 3069 3175 -2971 858 196 56 8 chr11 129047549 129047799 -21735754 + L1M4 LINE L1 2795 3056 -3090 250 200 0 0 chr11 129047799 129047844 -21735709 - AluSc SINE Alu -123 176 132 829 240 130 34 chr11 129047846 129048138 -21735415 - L1M4 LINE L1 -5591 1268 949 577 183 83 0 chr11 129048138 129048258 -21735295 - FLAM_A SINE Alu 0 142 13 350 336 103 7 chr11 129048260 129048406 -21735147 - L1M4 LINE L1 -5902 957 798 1600 236 128 74 chr11 129048424 129048940 -21734613 - L1M4 LINE L1 -6050 809 239 1738 134 159 69 chr11 129048940 129049404 -21734149 + LTR54 LTR ERV1 5 510 0 1600 236 128 74 chr11 129049404 129049628 -21733925 - L1M4 LINE L1 -6620 239 29 423 306 53 34 chr11 129049675 129049881 -21733672 - MIR SINE MIR -38 224 15 634 51 0 0 chr11 129050092 129050171 -21733382 + MADE1 DNA Mariner 2 80 0 1648 192 7 3 chr11 129050286 129050615 -21732938 + AluJo SINE Alu 2 331 0 1299 164 5 5 chr11 129050831 129051039 -21732514 + AluJo SINE Alu 85 292 -20 28 0 0 0 chr11 129051848 129051876 -21731677 + AT_rich Low_complexity Low_complexity 1 28 0 820 138 7 0 chr11 129053520 129053672 -21729881 - Charlie5 DNA MER1_type -27 2585 2433 250 80 20 0 chr11 129053694 129053744 -21729809 - Charlie5 DNA MER1_type -2488 124 74 2234 102 0 0 chr11 129053744 129054055 -21729498 + AluSx SINE Alu 1 311 0 28 0 0 0 chr11 129056052 129056080 -21727473 + AT_rich Low_complexity Low_complexity 1 28 0 222 300 0 0 chr11 129056178 129056228 -21727325 + (TAG)n Simple_repeat Simple_repeat 2 51 0 780 296 49 28 chr11 129056229 129056476 -21727077 - MIR SINE MIR -6 256 5 239 265 29 15 chr11 129056717 129056785 -21726768 + MIR3 SINE MIR 136 204 -4 324 341 55 24 chr11 129056852 129057016 -21726537 + L3 LINE CR1 1195 1363 -214 206 318 59 35 chr11 129057067 129057152 -21726401 - L2 LINE L2 -53 3219 3133 1513 159 64 15 chr11 129057696 129057960 -21725593 + AluJb SINE Alu 23 299 -13 225 162 0 0 chr11 129058346 129058383 -21725170 + Tigger5 DNA MER2_type 178 214 -2109 548 136 11 0 chr11 129058389 129058477 -21725076 + Tigger5 DNA MER2_type 2235 2323 0 1047 129 31 0 chr11 129058499 129058692 -21724861 + L1MA4 LINE L1 6092 6290 -10 1805 179 16 0 chr11 129058870 129059177 -21724376 + AluJo SINE Alu 1 312 0 760 295 66 4 chr11 129059199 129059440 -21724113 + MIR SINE MIR 2 257 -5 894 168 84 8 chr11 129061335 129061585 -21721968 + MER33 DNA MER1_type 56 324 0 510 177 62 39 chr11 129061914 129062044 -21721509 - Charlie1 DNA MER1_type 0 2761 2629 697 300 21 4 chr11 129062049 129062282 -21721271 - Charlie1 DNA MER1_type -2524 237 1 551 128 134 60 chr11 129062282 129062429 -21721124 + MER105 DNA DNA 46 203 -1 1327 165 56 30 chr11 129062661 129062928 -21720625 - AluJo SINE Alu -38 274 1 2282 77 0 3 chr11 129063228 129063536 -21720017 + AluSq SINE Alu 3 309 0 22 0 0 0 chr11 129063998 129064020 -21719533 + AT_rich Low_complexity Low_complexity 1 22 0 1936 140 28 0 chr11 129064240 129064362 -21719191 + AluSx SINE Alu 1 118 -194 225 0 0 0 chr11 129064362 129064387 -21719166 + (TA)n Simple_repeat Simple_repeat 1 25 0 1936 140 28 0 chr11 129064387 129064549 -21719004 + AluSx SINE Alu 118 293 -19 1314 177 12 16 chr11 129064782 129065025 -21718528 + AluJo SINE Alu 70 311 -1 845 141 167 5 chr11 129065060 129065252 -21718301 - MER46B DNA MER2_type -137 99 2 1927 102 11 25 chr11 129065354 129065637 -21717916 + AluSx SINE Alu 34 312 0 2260 103 0 3 chr11 129066739 129067040 -21716513 - AluSg SINE Alu -10 300 1 2523 57 3 0 chr11 129067608 129067909 -21715644 + AluY SINE Alu 1 302 -9 391 296 30 22 chr11 129068437 129068572 -21714981 + MIR3 SINE MIR 9 144 -64 1660 187 10 17 chr11 129068590 129068889 -21714664 + AluJb SINE Alu 1 297 -15 852 131 16 0 chr11 129069124 129069246 -21714307 - FLAM_C SINE Alu -19 124 1 1669 180 17 3 chr11 129069249 129069543 -21714010 - AluJo SINE Alu -14 298 1 330 181 112 17 chr11 129070164 129070280 -21713273 - L1MC5 LINE L1 -48 7913 7787 2307 84 3 7 chr11 129070403 129070711 -21712842 + AluSg1 SINE Alu 1 307 -2 703 246 51 10 chr11 129070714 129070909 -21712644 - MIR SINE MIR -57 205 3 26 0 0 0 chr11 129071312 129071338 -21712215 + AT_rich Low_complexity Low_complexity 1 26 0 231 36 0 0 chr11 129071395 129071423 -21712130 + (CA)n Simple_repeat Simple_repeat 1 28 0 1150 240 66 7 chr11 129071547 129071864 -21711689 + MLT1E LTR MaLR 299 589 -4 1312 177 18 84 chr11 129072159 129072838 -21710715 + L1MC3 LINE L1 7152 7978 -17 1262 177 128 4 chr11 129073079 129073226 -21710327 - AluJo SINE Alu -14 298 171 189 0 0 0 chr11 129073226 129073247 -21710306 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1262 177 128 4 chr11 129073247 129073364 -21710189 - AluJo SINE Alu -141 171 1 3832 197 34 30 chr11 129073867 129075289 -21708264 - L1MB8 LINE L1 -9 6169 4749 22 0 0 0 chr11 129075718 129075740 -21707813 + AT_rich Low_complexity Low_complexity 1 22 0 306 73 0 0 chr11 129075881 129075922 -21707631 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 694 210 0 0 chr11 129075922 129076046 -21707507 - FLAM_C SINE Alu -19 124 1 2233 79 14 3 chr11 129076602 129076893 -21706660 + AluY SINE Alu 1 294 -17 1645 181 3 17 chr11 129077179 129077471 -21706082 - AluJo SINE Alu -20 292 5 319 257 174 51 chr11 129077524 129078058 -21705495 - L1ME LINE L1 -313 5853 5258 302 128 8 197 chr11 129078176 129078233 -21705320 + Charlie1 DNA MER1_type 2666 2692 -69 2064 156 0 0 chr11 129078233 129078535 -21705018 + AluSx SINE Alu 1 302 -10 302 128 8 197 chr11 129078535 129078594 -21704959 + Charlie1 DNA MER1_type 2692 2760 -1 381 219 47 8 chr11 129078604 129078732 -21704821 - L1MEd LINE L1 -5007 1112 980 952 159 34 6 chr11 129078756 129078930 -21704623 - MER47A DNA MER2_type 0 366 188 1017 90 0 0 chr11 129078930 129079075 -21704478 + MER107 DNA MER1_type 1 145 -52 198 0 0 0 chr11 129079075 129079097 -21704456 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 556 125 275 75 chr11 129079118 129079239 -21704314 - MER47A DNA MER2_type -2131 192 30 1929 171 7 0 chr11 129079239 129079549 -21704004 + AluSx SINE Alu 1 312 0 556 125 275 75 chr11 129079549 129079587 -21703966 - MER47A DNA MER2_type -2293 30 1 1818 263 91 15 chr11 129079743 129080290 -21703263 - MLT1G1 LTR MaLR -6 589 1 882 125 0 0 chr11 129080400 129080520 -21703033 + FLAM_C SINE Alu 2 121 -12 351 305 85 59 chr11 129080541 129080882 -21702671 - L1MEd LINE L1 -5501 618 269 2285 95 0 3 chr11 129080961 129081256 -21702297 - AluSg SINE Alu -16 294 1 1906 114 43 4 chr11 129081354 129081635 -21701918 + AluSc SINE Alu 13 304 -5 1444 67 0 0 chr11 129081731 129081909 -21701644 + AluYa5 SINE Alu 121 298 -13 2117 114 14 0 chr11 129081915 129082204 -21701349 + AluSx SINE Alu 1 293 -19 1739 127 109 0 chr11 129082465 129082740 -21700813 + AluJo SINE Alu 1 305 -7 282 275 189 52 chr11 129085004 129085237 -21698316 + L2 LINE L2 1171 1435 -1879 1418 127 5 5 chr11 129085582 129085802 -21697751 + L1MB2 LINE L1 5943 6162 -9 280 325 17 43 chr11 129086641 129086758 -21696795 - MIR3 SINE MIR -4 204 91 2145 75 21 0 chr11 129086796 129087076 -21696477 + AluY SINE Alu 19 304 -7 1607 183 3 49 chr11 129087165 129087471 -21696082 + AluJo SINE Alu 1 292 -20 202 154 26 0 chr11 129087473 129087512 -21696041 + (TA)n Simple_repeat Simple_repeat 2 41 0 192 40 0 0 chr11 129087607 129087632 -21695921 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 231 292 13 52 chr11 129089314 129089468 -21694085 + L2 LINE L2 2271 2418 -896 496 251 109 57 chr11 129089594 129089805 -21693748 - MIR SINE MIR 0 262 41 1922 139 7 10 chr11 129089833 129090128 -21693425 + AluSg SINE Alu 1 294 -16 2020 139 0 3 chr11 129090709 129091003 -21692550 + AluSx SINE Alu 1 293 -19 1738 179 3 14 chr11 129091367 129091658 -21691895 + AluJb SINE Alu 1 288 -24 732 203 0 0 chr11 129091721 129091854 -21691699 - FLAM_C SINE Alu 0 133 1 600 300 108 5 chr11 129093041 129093264 -21690289 + MIR SINE MIR 5 250 -12 290 304 169 19 chr11 129093651 129093917 -21689636 + L2 LINE L2 2999 3304 -9 246 379 53 0 chr11 129094041 129094136 -21689417 - L2 LINE L2 -26 3246 3147 656 174 22 58 chr11 129094811 129094949 -21688604 - FLAM_C SINE Alu 0 133 1 540 227 47 39 chr11 129095208 129095336 -21688217 - FLAM_A SINE Alu -4 129 1 1344 181 69 18 chr11 129095501 129095778 -21687775 + AluJo SINE Alu 1 291 -21 835 143 8 0 chr11 129095786 129095912 -21687641 + FLAM_C SINE Alu 1 127 -6 261 83 0 0 chr11 129096178 129096214 -21687339 + (T)n Simple_repeat Simple_repeat 1 36 0 1553 171 24 0 chr11 129097332 129097583 -21685970 - AluJo SINE Alu -14 298 42 21 0 0 0 chr11 129097629 129097650 -21685903 + AT_rich Low_complexity Low_complexity 1 21 0 2081 97 0 4 chr11 129097695 129097963 -21685590 + AluSg SINE Alu 36 302 -8 201 39 0 0 chr11 129099045 129099071 -21684482 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 865 121 73 0 chr11 129099071 129099195 -21684358 - AluSq/x SINE Alu -179 133 1 280 345 14 7 chr11 129099208 129099356 -21684197 - L1ME LINE L1 -392 5729 5581 2243 116 0 0 chr11 129100694 129100988 -21682565 + AluSx SINE Alu 1 294 -18 943 168 12 12 chr11 129100991 129101152 -21682401 + AluJo SINE Alu 122 282 -30 455 181 0 0 chr11 129101154 129101226 -21682327 - AluJ/FLAM SINE Alu -240 72 1 223 381 45 51 chr11 129101231 129101567 -21681986 + L2 LINE L2 2594 2927 -387 1404 101 60 5 chr11 129101659 129101876 -21681677 - MER30 DNA MER1_type 0 230 2 445 243 71 53 chr11 129102788 129102957 -21680596 + MIR SINE MIR 20 191 -71 636 169 8 8 chr11 129102979 129103097 -21680456 + FLAM_C SINE Alu 1 118 -15 23 0 0 0 chr11 129103097 129103120 -21680433 + AT_rich Low_complexity Low_complexity 1 23 0 2143 123 0 3 chr11 129103703 129104004 -21679549 + AluJb SINE Alu 1 300 -12 370 293 24 10 chr11 129104635 129104772 -21678781 + MIR SINE MIR 19 154 -65 1507 196 57 11 chr11 129104788 129105069 -21678484 - AluSx SINE Alu -18 294 1 222 359 0 26 chr11 129105135 129105213 -21678340 - MIR SINE MIR -98 110 35 1675 148 10 13 chr11 129105442 129105747 -21677806 + MER7A DNA MER2_type 44 345 -1 2238 102 0 34 chr11 129106759 129106791 -21676762 - AluSq SINE Alu -1 312 280 207 0 0 0 chr11 129106791 129106814 -21676739 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 2238 102 0 34 chr11 129106814 129107104 -21676449 - AluSq SINE Alu -33 280 1 241 384 29 29 chr11 129107433 129107571 -21675982 - MIR SINE MIR -105 157 20 444 298 57 106 chr11 129107634 129108057 -21675496 - L2 LINE L2 -1 3271 2870 285 146 0 0 chr11 129108223 129108264 -21675289 + AluJb SINE Alu 1 41 -261 1931 129 50 0 chr11 129108268 129108546 -21675007 - AluSx SINE Alu -20 292 1 1683 144 29 14 chr11 129108547 129108824 -21674729 + AluJb SINE Alu 28 308 -4 680 335 142 28 chr11 129108824 129109435 -21674118 - L2 LINE L2 -626 2688 2008 1075 255 115 14 chr11 129109491 129110004 -21673549 + L1ME4a LINE L1 5541 6105 -16 753 210 6 19 chr11 129110017 129110174 -21673379 - AluJb SINE Alu -22 290 136 1835 195 13 27 chr11 129110199 129110810 -21672743 - L1MC/D LINE L1 -743 5403 4849 1147 130 6 0 chr11 129110833 129111036 -21672517 - AluSp SINE Alu 0 324 121 225 200 36 0 chr11 129111171 129111226 -21672327 - MER77 LTR ERV1 -250 355 299 207 0 0 0 chr11 129111237 129111260 -21672293 + (ATTG)n Simple_repeat Simple_repeat 1 23 0 434 270 58 7 chr11 129111392 129111529 -21672024 - MER77 LTR ERV1 -408 197 54 285 197 30 0 chr11 129111555 129111621 -21671932 + Charlie5 DNA MER1_type 131 198 -2414 676 224 45 19 chr11 129111622 129111886 -21671667 + Charlie5 DNA MER1_type 2353 2623 0 241 360 56 17 chr11 129111890 129112123 -21671430 - L2 LINE L2 -2430 884 643 271 193 24 48 chr11 129112584 129112667 -21670886 + MER2 DNA MER2_type 264 344 -1 1031 324 109 8 chr11 129112667 129113379 -21670174 + L2 LINE L2 2533 3303 -10 283 313 30 0 chr11 129113442 129113509 -21670044 + L2 LINE L2 3187 3255 -17 2351 69 0 0 chr11 129114423 129114711 -21668842 + AluY SINE Alu 1 288 -23 207 0 0 0 chr11 129114719 129114742 -21668811 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 22 56 0 0 chr11 129114906 129114942 -21668611 + AT_rich Low_complexity Low_complexity 1 36 0 2094 133 0 7 chr11 129115198 129115492 -21668061 + AluSx SINE Alu 1 292 -20 886 263 27 27 chr11 129115492 129115624 -21667929 + MIR SINE MIR 25 159 -103 2079 124 7 3 chr11 129115624 129115922 -21667631 + AluSx SINE Alu 3 301 -11 886 263 27 27 chr11 129115922 129116013 -21667540 + MIR SINE MIR 158 248 -14 2303 82 3 3 chr11 129116050 129116344 -21667209 - AluSp SINE Alu -19 294 1 346 323 21 0 chr11 129116379 129116475 -21667078 + L2 LINE L2 3132 3229 -43 717 69 20 10 chr11 129116613 129116715 -21666838 + AluY SINE Alu 5 107 -204 234 0 0 0 chr11 129116816 129116842 -21666711 + (GGAA)n Simple_repeat Simple_repeat 1 26 0 619 210 8 16 chr11 129116930 129117054 -21666499 + AluJ SINE Alu 2 124 -178 24 0 0 0 chr11 129117057 129117081 -21666472 + AT_rich Low_complexity Low_complexity 1 24 0 542 191 35 0 chr11 129117087 129117202 -21666351 + L1MA9 LINE L1 6189 6307 -5 785 214 95 8 chr11 129117213 129117465 -21666088 + L1ME3A LINE L1 5694 5967 -203 971 211 22 0 chr11 129117501 129117681 -21665872 + AluJ SINE Alu 129 312 0 290 270 74 47 chr11 129117722 129117870 -21665683 + L1ME3A LINE L1 6012 6163 -7 230 182 23 0 chr11 129117877 129117921 -21665632 + MIR SINE MIR 204 248 -14 257 298 121 16 chr11 129118142 129118266 -21665287 + MIR SINE MIR 76 212 -50 1078 188 12 78 chr11 129118536 129118791 -21664762 + MER8 DNA MER2_type 1 238 -1 1943 122 35 3 chr11 129119101 129119387 -21664166 - AluSc SINE Alu -2 307 13 2285 95 0 3 chr11 129119485 129119780 -21663773 + AluSg SINE Alu 1 294 -16 349 305 87 58 chr11 129119855 129120199 -21663354 + L1MEd LINE L1 265 618 -5501 882 125 0 0 chr11 129120220 129120340 -21663213 - FLAM_C SINE Alu -12 121 2 1818 263 91 15 chr11 129120450 129120997 -21662556 + MLT1G1 LTR MaLR 1 589 -6 556 125 275 75 chr11 129121153 129121191 -21662362 + MER47A DNA MER2_type 1 30 -2293 1929 171 7 0 chr11 129121191 129121501 -21662052 - AluSx SINE Alu 0 312 1 556 125 275 75 chr11 129121501 129121622 -21661931 + MER47A DNA MER2_type 30 192 -174 198 0 0 0 chr11 129121643 129121665 -21661888 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1017 90 0 0 chr11 129121665 129121810 -21661743 - MER107 DNA MER1_type -52 145 1 952 159 34 6 chr11 129121810 129121984 -21661569 + MER47A DNA MER2_type 188 366 0 381 219 47 8 chr11 129122008 129122136 -21661417 + L1MEd LINE L1 980 1112 -5007 304 128 8 197 chr11 129122146 129122205 -21661348 - Charlie1 DNA MER1_type -1 2760 2732 2064 156 0 0 chr11 129122205 129122507 -21661046 - AluSx SINE Alu -10 302 1 304 128 8 197 chr11 129122507 129122564 -21660989 - Charlie1 DNA MER1_type -29 2732 2666 415 262 152 59 chr11 129122682 129123267 -21660286 + L1ME2 LINE L1 5258 5910 -260 1703 185 0 14 chr11 129123267 129123559 -21659994 + AluJo SINE Alu 5 292 -20 415 262 152 59 chr11 129123559 129123618 -21659935 + L1ME2 LINE L1 5910 5962 -208 2269 76 14 0 chr11 129123846 129124135 -21659418 - AluY SINE Alu -18 293 1 2729 207 50 23 chr11 129125061 129125162 -21658391 - MER21B LTR ERV1 -48 815 718 189 0 0 0 chr11 129125162 129125183 -21658370 + (CAGTT)n Simple_repeat Simple_repeat 1 21 0 2729 207 50 23 chr11 129125183 129125780 -21657773 - MER21B LTR ERV1 -145 718 98 192 217 0 0 chr11 129125954 129126000 -21657553 + (TA)n Simple_repeat Simple_repeat 2 47 0 511 208 9 0 chr11 129126291 129126397 -21657156 - AluSg/x SINE Alu -3 306 200 1490 85 5 5 chr11 129126397 129126596 -21656957 + AluSc SINE Alu 96 294 -15 225 280 150 10 chr11 129126744 129126844 -21656709 + MIR3 SINE MIR 85 198 -10 2023 131 7 3 chr11 129126896 129127193 -21656360 + AluSx SINE Alu 1 298 -14 1167 86 9 73 chr11 129127325 129127557 -21655996 + AluSg/x SINE Alu 88 304 -8 313 281 12 75 chr11 129127595 129127625 -21655928 + L1MB3 LINE L1 5858 5888 -295 1450 183 131 0 chr11 129127625 129127899 -21655654 + AluJb SINE Alu 1 310 -2 313 281 12 75 chr11 129127899 129128028 -21655525 + L1MB3 LINE L1 5888 6007 -176 * 752 250 36 10 chr11 129127900 129128096 -21655457 + L1MD2 LINE L1 5879 6079 -280 866 173 31 0 chr11 129128210 129128435 -21655118 + L1MD2 LINE L1 6079 6359 0 732 190 19 74 chr11 129128469 129128685 -21654868 - L2 LINE L2 -684 2630 2427 625 191 75 0 chr11 129130798 129130945 -21652608 + L1ME2 LINE L1 5997 6154 -10 1017 163 52 48 chr11 129131765 129132016 -21651537 + LTR29 LTR ERV1 1 252 -370 936 182 44 0 chr11 129132019 129132178 -21651375 - AluJb SINE Alu -14 298 133 285 51 0 0 chr11 129132186 129132225 -21651328 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 189 0 0 0 chr11 129132229 129132250 -21651303 + (T)n Simple_repeat Simple_repeat 1 21 0 1806 143 7 23 chr11 129132284 129132584 -21650969 - AluSx SINE Alu -15 297 3 896 249 75 12 chr11 129132584 129132917 -21650636 + LTR48B LTR ERV1 291 644 0 261 57 0 0 chr11 129133108 129133143 -21650410 + (A)n Simple_repeat Simple_repeat 1 35 0 442 286 116 11 chr11 129133296 129133448 -21650105 + MIR SINE MIR 11 172 -63 579 191 7 52 chr11 129134289 129134425 -21649128 + FLAM_C SINE Alu 2 131 -2 2139 131 0 0 chr11 129134866 129135171 -21648382 + AluSx SINE Alu 1 305 -7 2047 112 28 7 chr11 129135574 129135859 -21647694 + AluSx SINE Alu 3 293 -19 479 249 201 18 chr11 129136012 129136181 -21647372 - MIR SINE MIR -43 219 20 2258 104 7 0 chr11 129136712 129137011 -21646542 + AluSx SINE Alu 1 301 -11 1849 131 19 45 chr11 129137023 129137336 -21646217 + AluJo SINE Alu 1 305 -7 21 36 0 0 chr11 129137724 129137752 -21645801 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr11 129138497 129138536 -21645017 + AT_rich Low_complexity Low_complexity 1 39 0 1849 158 0 0 chr11 129138597 129138894 -21644659 + AluJb SINE Alu 1 297 -15 692 179 101 65 chr11 129139455 129139623 -21643930 + AluJo SINE Alu 1 174 -138 1646 181 31 7 chr11 129139746 129140033 -21643520 - AluJo SINE Alu -18 294 1 405 54 0 0 chr11 129140733 129140789 -21642764 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 1888 166 10 0 chr11 129140789 129141078 -21642475 - AluSx SINE Alu -20 292 1 738 44 0 0 chr11 129141135 129141225 -21642328 - HY4 scRNA scRNA -3 90 1 2227 93 21 0 chr11 129141253 129141543 -21642010 + AluSq SINE Alu 1 296 -17 1045 166 0 6 chr11 129141544 129141707 -21641846 + AluSg/x SINE Alu 132 293 -17 595 182 112 108 chr11 129141722 129142018 -21641535 - L1ME LINE L1 -593 5569 5273 25 0 0 0 chr11 129142018 129142043 -21641510 + AT_rich Low_complexity Low_complexity 1 25 0 1806 163 4 0 chr11 129142053 129142329 -21641224 - AluJo SINE Alu -25 287 11 21 0 0 0 chr11 129142342 129142363 -21641190 + AT_rich Low_complexity Low_complexity 1 21 0 514 172 0 0 chr11 129142379 129142478 -21641075 + L1MA9 LINE L1 6190 6288 -24 309 261 100 39 chr11 129142505 129142765 -21640788 - L1ME LINE L1 -867 5279 5004 700 183 0 0 chr11 129142979 129143099 -21640454 + AluJb SINE Alu 138 257 -55 1751 133 7 7 chr11 129143199 129143469 -21640084 - AluJb SINE Alu -42 270 1 649 244 0 8 chr11 129143774 129143888 -21639665 + FLAM_A SINE Alu 1 115 -187 207 0 0 0 chr11 129143888 129143911 -21639642 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 649 244 0 8 chr11 129143911 129143927 -21639626 + FLAM_A SINE Alu 115 130 -172 2219 143 0 0 chr11 129143931 129144239 -21639314 + AluSx SINE Alu 1 308 -4 21 36 0 0 chr11 129144307 129144335 -21639218 + AT_rich Low_complexity Low_complexity 1 28 0 2289 110 0 0 chr11 129144443 129144751 -21638802 + AluSx SINE Alu 1 308 -4 1324 52 0 0 chr11 129144924 129145079 -21638474 - AluY SINE Alu -10 301 147 367 59 0 0 chr11 129145079 129145130 -21638423 + MADE1 DNA Mariner 29 79 -1 1718 157 49 3 chr11 129145283 129145570 -21637983 + AluSq SINE Alu 1 300 -13 265 250 114 11 chr11 129145848 129145936 -21637617 - MIR3 SINE MIR -51 157 61 189 0 0 0 chr11 129146122 129146143 -21637410 + (T)n Simple_repeat Simple_repeat 1 21 0 1043 76 8 0 chr11 129146143 129146275 -21637278 - AluSq/x SINE Alu -180 133 1 423 165 183 9 chr11 129146279 129146394 -21637159 + L1MB7 LINE L1 6031 6165 -19 1610 216 67 30 chr11 129146394 129146918 -21636635 - L1ME LINE L1 -1284 4862 4320 1167 153 4 64 chr11 129146918 129147154 -21636399 - AluJo SINE Alu 0 312 91 344 115 264 0 chr11 129147171 129147258 -21636295 - L1ME1 LINE L1 -341 5825 5716 2287 94 0 28 chr11 129147852 129148202 -21635351 + AluY SINE Alu 1 341 0 300 142 279 0 chr11 129149459 129149552 -21634001 - L1M4 LINE L1 -344 5820 5706 271 274 0 32 chr11 129149927 129150022 -21633531 + MIR SINE MIR 84 175 -87 1044 144 0 0 chr11 129150022 129150168 -21633385 - AluJo SINE Alu -47 265 120 707 208 0 8 chr11 129150523 129150653 -21632900 - AluJo SINE Alu -173 129 1 26 0 0 0 chr11 129150653 129150679 -21632874 + AT_rich Low_complexity Low_complexity 1 26 0 2195 95 14 3 chr11 129152791 129153086 -21630467 - AluSx SINE Alu -14 298 1 2283 109 0 0 chr11 129153201 129153503 -21630050 + AluSx SINE Alu 1 302 -10 732 139 66 8 chr11 129153725 129153847 -21629706 - FLAM_C SINE Alu -13 130 2 778 260 81 13 chr11 129154111 129154346 -21629207 - MIR SINE MIR -1 261 11 352 229 94 34 chr11 129154637 129154815 -21628738 + MIR SINE MIR 2 262 0 194 313 62 12 chr11 129154975 129155055 -21628498 - L2 LINE L2 -178 3094 3011 780 190 26 58 chr11 129155269 129155495 -21628058 - L1MA9 LINE L1 -38 6274 6056 21 0 0 0 chr11 129157520 129157541 -21626012 + AT_rich Low_complexity Low_complexity 1 21 0 223 348 43 0 chr11 129158279 129158348 -21625205 + L2 LINE L2 3186 3257 -15 1241 132 9 38 chr11 129159111 129159323 -21624230 + AluJo SINE Alu 84 289 -23 456 306 69 14 chr11 129160316 129160460 -21623093 - MIR3 SINE MIR -43 165 14 394 220 29 124 chr11 129160811 129161034 -21622519 - Charlie2 DNA MER1_type -8 2854 2696 1900 156 0 3 chr11 129161034 129161336 -21622217 + AluJb SINE Alu 6 306 -6 394 220 29 124 chr11 129161336 129161503 -21622050 - Charlie2 DNA MER1_type -166 2696 2515 432 188 45 15 chr11 129161562 129161695 -21621858 - Charlie2 DNA MER1_type -496 2366 2230 658 282 18 36 chr11 129161710 129161987 -21621566 - Charlie2 DNA MER1_type -2524 338 67 858 121 8 45 chr11 129162094 129162226 -21621327 + FLAM_C SINE Alu 1 127 -16 256 250 0 16 chr11 129162320 129162384 -21621169 + MIR SINE MIR 166 228 -34 2292 82 3 0 chr11 129162807 129163099 -21620454 + AluSp SINE Alu 1 293 -20 2171 100 0 14 chr11 129163253 129163543 -21620010 + AluSg SINE Alu 1 286 -24 22 0 0 0 chr11 129163620 129163642 -21619911 + AT_rich Low_complexity Low_complexity 1 22 0 2049 150 0 0 chr11 129163730 129164030 -21619523 + AluSx SINE Alu 3 302 -10 1443 204 20 34 chr11 129164110 129164404 -21619149 + AluJo SINE Alu 3 292 -10 1943 129 7 0 chr11 129164441 129164719 -21618834 + AluSq SINE Alu 1 280 -33 180 0 0 0 chr11 129164719 129164739 -21618814 + (CA)n Simple_repeat Simple_repeat 1 20 0 438 200 21 0 chr11 129164741 129164836 -21618717 + L1MD3 LINE L1 7882 7978 -17 2267 88 0 3 chr11 129164836 129165121 -21618432 + AluSq SINE Alu 1 284 -29 1130 86 0 0 chr11 129165121 129165167 -21618386 + AluSx SINE Alu 1 331 0 2649 138 13 102 chr11 129165357 129165885 -21617668 + MLT2B2 LTR ERVL 1 481 -34 2160 127 3 3 chr11 129165955 129166262 -21617291 - AluSx SINE Alu -5 307 1 2052 115 30 0 chr11 129166295 129166599 -21616954 + AluSq SINE Alu 1 313 0 215 202 247 11 chr11 129166764 129166853 -21616700 - L2 LINE L2 -640 2674 2565 2286 90 7 0 chr11 129167490 129167791 -21615762 + AluY SINE Alu 1 303 -8 2169 88 0 20 chr11 129167911 129168208 -21615345 + AluSg SINE Alu 3 293 -17 251 326 108 31 chr11 129168331 129168460 -21615093 + L2 LINE L2 3133 3271 -1 1982 108 10 10 chr11 129168471 129168767 -21614786 - AluSq SINE Alu -17 296 1 * 2107 141 3 0 chr11 129168767 129169070 -21614483 - AluSx SINE Alu -8 304 1 2396 93 0 3 chr11 129169114 129169426 -21614127 - AluY SINE Alu 0 311 1 1201 195 23 35 chr11 129169427 129169688 -21613865 + AluJo SINE Alu 55 312 0 1831 121 18 7 chr11 129169688 129169970 -21613583 + L1MA4 LINE L1 6015 6299 -1 2281 110 0 0 chr11 129169976 129170277 -21613276 + AluSg SINE Alu 2 302 -8 2090 113 24 3 chr11 129170505 129170796 -21612757 - AluSq SINE Alu -16 297 1 2305 99 0 3 chr11 129171164 129171467 -21612086 + AluSc SINE Alu 1 302 -7 2066 181 8 8 chr11 129172283 129172746 -21610807 - MLT2B1 LTR ERVL -8 512 1 2158 119 0 0 chr11 129173334 129173629 -21609924 - AluSx SINE Alu -14 298 4 397 302 116 11 chr11 129174127 129174321 -21609232 - MIR SINE MIR -50 212 1 2208 126 3 0 chr11 129174436 129174746 -21608807 - AluSx SINE Alu -1 311 1 1775 176 23 81 chr11 129174835 129175228 -21608325 + MLT1A2 LTR MaLR 4 373 -1 304 328 42 8 chr11 129175473 129175592 -21607961 + MIR3 SINE MIR 85 207 -1 1981 112 11 14 chr11 129175597 129175913 -21607640 - AluSx SINE Alu 0 315 1 325 161 0 0 chr11 129176884 129176940 -21606613 + AluSx SINE Alu 1 56 -252 1805 120 0 12 chr11 129176969 129177227 -21606326 + AluSx SINE Alu 56 310 -2 593 230 127 0 chr11 129177480 129177606 -21605947 - FAM SINE Alu -43 142 1 2092 119 10 19 chr11 129177665 129177976 -21605577 - AluSx SINE Alu -4 308 1 1580 169 34 40 chr11 129178021 129178375 -21605178 - L1MB8 LINE L1 -4 6174 5823 2248 104 27 0 chr11 129178375 129178674 -21604879 - AluSg SINE Alu -3 307 1 2070 138 3 3 chr11 129178695 129179007 -21604546 - AluSx SINE Alu 0 312 1 819 161 24 0 chr11 129179014 129179138 -21604415 - FLAM_C SINE Alu -6 127 1 2162 119 9 25 chr11 129179148 129179466 -21604087 - AluSq SINE Alu 0 313 1 1405 204 116 31 chr11 129179472 129179729 -21603824 - L1M4 LINE L1 -1439 4707 4473 210 37 0 0 chr11 129179729 129179756 -21603797 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2051 104 25 7 chr11 129179758 129180037 -21603516 - AluSc SINE Alu -25 284 1 1405 204 116 31 chr11 129180037 129180226 -21603327 - L1M4 LINE L1 -1673 4473 4220 2159 136 3 0 chr11 129180505 129180814 -21602739 - AluSx SINE Alu -2 310 1 507 254 146 32 chr11 129181088 129181343 -21602210 - MIR SINE MIR 0 262 2 1907 139 29 0 chr11 129181351 129181625 -21601928 - AluJo SINE Alu -29 283 2 539 143 143 31 chr11 129181626 129181724 -21601829 - FLAM_A SINE Alu -8 134 26 270 322 124 28 chr11 129182111 129182288 -21601265 - L2 LINE L2 -537 2777 2584 807 156 33 0 chr11 129182330 129182452 -21601101 + FLAM_C SINE Alu 1 126 -17 21 0 0 0 chr11 129182452 129182473 -21601080 + AT_rich Low_complexity Low_complexity 1 21 0 447 311 98 6 chr11 129182626 129182809 -21600744 - MIR SINE MIR 0 262 63 224 314 0 14 chr11 129182825 129182895 -21600658 - L2 LINE L2 -963 2351 2283 557 311 41 27 chr11 129182974 129183193 -21600360 - MIR SINE MIR -4 258 37 1187 213 91 57 chr11 129183359 129183711 -21599842 + MLT1A1 LTR MaLR 2 365 0 3396 47 0 0 chr11 129183825 129184209 -21599344 + L1PA5 LINE L1 5763 6146 -8 355 157 0 0 chr11 129184209 129184279 -21599274 + (TA)n Simple_repeat Simple_repeat 1 70 0 367 325 82 34 chr11 129184361 129184653 -21598900 + L1MC4a LINE L1 5554 5859 -1949 741 156 37 0 chr11 129184660 129184795 -21598758 - L1MD1 LINE L1 0 6242 6103 546 302 137 67 chr11 129185173 129185340 -21598213 - L2 LINE L2 -4 3268 3114 868 230 36 80 chr11 129185340 129185614 -21597939 + MIR SINE MIR 1 262 0 546 302 137 67 chr11 129185614 129185919 -21597634 - L2 LINE L2 -158 3114 2759 2176 118 0 0 chr11 129185919 129186216 -21597337 + AluSg SINE Alu 1 297 -13 546 302 137 67 chr11 129186216 129186334 -21597219 - L2 LINE L2 -513 2759 2651 315 277 67 8 chr11 129187127 129187246 -21596307 + L1M4 LINE L1 3935 4060 -2086 6004 148 38 9 chr11 129187246 129187994 -21595559 + L1MC2 LINE L1 5200 5989 -355 2417 87 0 0 chr11 129187994 129188294 -21595259 + AluSq SINE Alu 1 300 -13 6004 148 38 9 chr11 129188294 129188644 -21594909 + L1MC2 LINE L1 5989 6328 -16 1693 182 17 3 chr11 129188644 129188941 -21594612 + AluJo SINE Alu 1 301 -11 697 261 149 0 chr11 129189045 129189267 -21594286 + MIR SINE MIR 2 256 -6 385 218 255 20 chr11 129189275 129189422 -21594131 + MER5A DNA MER1_type 9 178 0 23 0 0 0 chr11 129189695 129189718 -21593835 + AT_rich Low_complexity Low_complexity 1 23 0 1176 96 0 0 chr11 129189722 129189868 -21593685 + AluSq/x SINE Alu 1 146 -166 1887 117 78 7 chr11 129191262 129191545 -21592008 - AluSx SINE Alu -9 303 1 2046 110 7 3 chr11 129192549 129192873 -21590680 + AluSg SINE Alu 1 325 0 24 32 0 0 chr11 129192992 129193023 -21590530 + AT_rich Low_complexity Low_complexity 1 31 0 1845 148 31 7 chr11 129193321 129193611 -21589942 - AluSx SINE Alu -15 297 1 2428 97 7 0 chr11 129193738 129194048 -21589505 - AluSx SINE Alu 0 312 1 3607 174 67 44 chr11 129194050 129194215 -21589338 + L1ME1 LINE L1 5157 5317 -1017 1774 165 7 23 chr11 129194215 129194518 -21589035 - AluJo SINE Alu -14 298 1 3607 174 67 44 chr11 129194518 129195374 -21588179 + L1ME1 LINE L1 5317 6332 -2 2202 101 10 0 chr11 129195385 129195681 -21587872 + AluSx SINE Alu 1 299 -13 1617 172 7 24 chr11 129196147 129196443 -21587110 + AluJo SINE Alu 1 291 -21 834 188 128 59 chr11 129196888 129197208 -21586345 - L1MC5 LINE L1 -33 7928 7587 871 217 0 44 chr11 129197986 129198124 -21585429 + FRAM SINE Alu 2 145 -167 2389 86 3 0 chr11 129198124 129198426 -21585127 - AluSq SINE Alu -10 303 1 1949 103 89 3 chr11 129198427 129198709 -21584844 - AluSq SINE Alu -7 306 1 871 217 0 44 chr11 129198709 129198748 -21584805 + FRAM SINE Alu 144 173 -3 364 272 61 35 chr11 129199121 129199235 -21584318 + L2 LINE L2 3151 3267 -5 235 173 19 19 chr11 129199237 129199289 -21584264 + GA-rich Low_complexity Low_complexity 3 54 0 1257 181 39 42 chr11 129199305 129199564 -21583989 - AluJo SINE Alu -19 293 36 767 138 62 39 chr11 129199668 129199798 -21583755 - FLAM_C SINE Alu 0 133 1 2162 113 10 0 chr11 129199985 129200295 -21583258 + AluSq SINE Alu 1 313 0 378 327 72 40 chr11 129201292 129201515 -21582038 + MIR SINE MIR 7 236 -26 680 146 100 18 chr11 129201806 129201916 -21581637 - FRAM SINE Alu -25 151 33 266 245 11 106 chr11 129202232 129202326 -21581227 + MIR3 SINE MIR 1 86 -122 2226 106 0 13 chr11 129202520 129202823 -21580730 + AluSx SINE Alu 1 299 -13 2277 85 13 10 chr11 129203416 129203721 -21579832 - AluY SINE Alu -5 306 1 2281 110 3 0 chr11 129203721 129204028 -21579525 - AluSq SINE Alu -4 309 1 2203 81 0 52 chr11 129204411 129204719 -21578834 - AluSg1 SINE Alu -17 292 1 1489 233 0 7 chr11 129204752 129205053 -21578500 + AluJo SINE Alu 1 299 -13 2119 79 52 14 chr11 129206293 129206584 -21576969 - AluSx SINE Alu -10 302 1 32 43 0 0 chr11 129206595 129206641 -21576912 + AT_rich Low_complexity Low_complexity 1 46 0 387 269 45 45 chr11 129207290 129207446 -21576107 - L2 LINE L2 0 3313 3158 314 286 171 31 chr11 129207481 129207768 -21575785 + L1MC4a LINE L1 4959 5285 -861 830 216 0 0 chr11 129207769 129207917 -21575636 + AluSg/x SINE Alu 137 284 -28 23 33 0 0 chr11 129207917 129207947 -21575606 + AT_rich Low_complexity Low_complexity 1 30 0 370 256 226 56 chr11 129207969 129208274 -21575279 + L1MC4a LINE L1 5296 5652 -2156 23 33 0 0 chr11 129208382 129208412 -21575141 + AT_rich Low_complexity Low_complexity 1 30 0 2127 123 7 0 chr11 129208547 129208839 -21574714 + AluSx SINE Alu 1 294 -18 553 249 40 20 chr11 129208845 129209046 -21574507 + L1MC4a LINE L1 5728 5932 -1876 2418 71 0 10 chr11 129209222 129209533 -21574020 + AluY SINE Alu 1 308 -3 4272 186 39 8 chr11 129209658 129210673 -21572880 + L1MB8 LINE L1 5129 6178 0 308 257 72 17 chr11 129210688 129210801 -21572752 - MIR SINE MIR -80 128 14 2229 112 0 3 chr11 129212132 129212445 -21571108 - AluSx SINE Alu 0 312 1 1402 196 16 47 chr11 129212983 129213305 -21570248 - AluJo SINE Alu 0 312 1 838 225 42 34 chr11 129213313 129213549 -21570004 + L1MC5 LINE L1 7676 7913 -48 1604 131 116 14 chr11 129213581 129213856 -21569697 + AluSg SINE Alu 1 303 -7 2254 85 3 7 chr11 129214288 129214582 -21568971 + AluSg SINE Alu 1 293 -17 1908 128 3 13 chr11 129214593 129214898 -21568655 + AluSx SINE Alu 1 302 -10 843 217 0 0 chr11 129214898 129215036 -21568517 - FRAM SINE Alu -37 139 2 814 188 128 59 chr11 129215814 129216134 -21567419 + L1MC5 LINE L1 7587 7928 -33 1637 172 7 24 chr11 129216575 129216871 -21566682 - AluJo SINE Alu -21 291 1 2224 101 10 0 chr11 129217337 129217633 -21565920 - AluSx SINE Alu -13 299 1 318 205 51 17 chr11 129217644 129217656 -21565897 - L1MA10 LINE L1 -2 6332 6321 2629 175 60 48 chr11 129217656 129218306 -21565247 - L1ME1 LINE L1 -5 6161 5504 1457 192 12 46 chr11 129218849 129219172 -21564381 - AluJo SINE Alu 0 312 1 819 229 42 34 chr11 129219180 129219416 -21564137 + L1MC5 LINE L1 7676 7913 -48 1623 131 116 14 chr11 129219448 129219723 -21563830 + AluSg SINE Alu 1 303 -7 2283 85 3 7 chr11 129220155 129220449 -21563104 + AluSg SINE Alu 1 293 -17 2269 117 0 0 chr11 129220460 129220760 -21562793 + AluSg SINE Alu 1 300 -10 2142 103 3 14 chr11 129220903 129221195 -21562358 + AluSx SINE Alu 1 289 -23 630 282 61 27 chr11 129221373 129221635 -21561918 + L1ME LINE L1 5469 5739 -382 1836 155 3 28 chr11 129221693 129222010 -21561543 + AluJo SINE Alu 1 309 -3 274 272 37 12 chr11 129222285 129222366 -21561187 - L2 LINE L2 -36 3277 3195 1910 148 3 19 chr11 129222416 129222727 -21560826 - AluJo SINE Alu -6 306 1 2463 61 0 7 chr11 129222869 129223166 -21560387 + AluY SINE Alu 1 295 -16 229 324 0 0 chr11 129224788 129224856 -21558697 + MIR SINE MIR 34 101 -107 2517 89 0 3 chr11 129224937 129225250 -21558303 - AluSq SINE Alu 0 313 2 1854 182 0 7 chr11 129225523 129225830 -21557723 - AluJo SINE Alu -7 305 1 1139 298 53 21 chr11 129225834 129226424 -21557129 + L2 LINE L2 2698 3313 0 24 77 0 0 chr11 129227412 129227464 -21556089 + AT_rich Low_complexity Low_complexity 1 52 0 673 244 34 48 chr11 129227752 129227961 -21555592 - MIR SINE MIR -43 219 14 1821 155 0 30 chr11 129228081 129228377 -21555176 + AluJo SINE Alu 14 300 -12 207 0 0 0 chr11 129228938 129228961 -21554592 + (A)n Simple_repeat Simple_repeat 1 23 0 211 236 7 61 chr11 129231730 129231878 -21551675 + (CCCCG)n Simple_repeat Simple_repeat 5 144 0 30 105 0 0 chr11 129232046 129232160 -21551393 + GC_rich Low_complexity Low_complexity 1 114 0 2348 88 3 0 chr11 129233851 129234146 -21549407 - AluSg SINE Alu -14 296 1 810 296 4 0 chr11 129234736 129234962 -21548591 - MIR SINE MIR -31 231 5 2346 69 0 10 chr11 129235217 129235506 -21548047 + AluSc SINE Alu 18 303 -6 1927 143 3 13 chr11 129235515 129235815 -21547738 + AluSx SINE Alu 1 297 -15 2012 138 0 0 chr11 129236606 129236882 -21546671 + AluSx SINE Alu 5 280 -32 180 0 0 0 chr11 129236885 129236905 -21546648 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1559 146 4 50 chr11 129237267 129237394 -21546159 - AluJo SINE Alu -54 258 148 2705 33 0 0 chr11 129237394 129237694 -21545859 - AluY SINE Alu -11 300 1 1559 146 4 50 chr11 129237694 129237827 -21545726 - AluJo SINE Alu -164 148 10 2211 114 0 23 chr11 129237988 129238294 -21545259 - AluSx SINE Alu -13 299 1 1752 145 3 77 chr11 129238791 129238938 -21544615 + AluJb SINE Alu 1 157 -155 2346 68 7 3 chr11 129238938 129239234 -21544319 + AluY SINE Alu 1 297 -14 2468 62 3 16 chr11 129239244 129239552 -21544001 + AluY SINE Alu 1 304 -7 1752 145 3 77 chr11 129239552 129239718 -21543835 + AluJb SINE Alu 166 301 -11 2302 87 3 0 chr11 129240114 129240413 -21543140 + AluSg SINE Alu 1 300 -10 2222 124 0 16 chr11 129240579 129240894 -21542659 - AluSx SINE Alu -2 310 1 2130 108 16 10 chr11 129241142 129241448 -21542105 + AluSx SINE Alu 1 308 -4 1598 161 4 29 chr11 129241911 129242191 -21541362 + AluJo SINE Alu 14 286 -26 192 77 0 0 chr11 129242241 129242267 -21541286 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 1231 118 0 0 chr11 129242269 129242439 -21541114 - AluSg/x SINE Alu -6 306 137 488 191 0 154 chr11 129242589 129242670 -21540883 - L1 LINE L1 -1920 4226 4181 1521 147 0 4 chr11 129242670 129242902 -21540651 - AluJb SINE Alu -81 231 1 488 191 0 154 chr11 129242902 129242982 -21540571 - L1 LINE L1 -1965 4181 4090 195 42 0 0 chr11 129242992 129243016 -21540537 + (TTG)n Simple_repeat Simple_repeat 2 25 0 943 175 0 0 chr11 129243018 129243161 -21540392 - FRAM SINE Alu -28 148 6 2195 112 3 3 chr11 129243187 129243481 -21540072 + AluSq SINE Alu 1 294 -19 26 0 0 0 chr11 129243501 129243527 -21540026 + AT_rich Low_complexity Low_complexity 1 26 0 223 236 42 14 chr11 129243581 129243653 -21539900 + MIR SINE MIR 158 231 -31 202 289 11 56 chr11 129243970 129244060 -21539493 - MIR SINE MIR -174 88 3 25 31 0 0 chr11 129244278 129244310 -21539243 + AT_rich Low_complexity Low_complexity 1 32 0 2108 145 0 0 chr11 129244377 129244673 -21538880 + AluSq SINE Alu 1 296 -17 1754 164 16 16 chr11 129244731 129245035 -21538518 - AluSx SINE Alu -8 304 1 719 178 11 120 chr11 129245069 129245227 -21538326 + FAM SINE Alu 1 136 -185 1638 190 3 7 chr11 129245227 129245522 -21538031 - AluSx SINE Alu -13 299 6 719 178 11 120 chr11 129245522 129245554 -21537999 + FAM SINE Alu 136 170 -15 3891 168 100 21 chr11 129245588 129246350 -21537203 - LTR12 LTR ERV1 0 826 5 2268 184 32 39 chr11 129246363 129246978 -21536575 - pTR5 LTR ERV1 -1087 1351 741 2161 107 14 0 chr11 129247165 129247454 -21536099 + AluSp SINE Alu 1 293 -20 5226 61 1 0 chr11 129247456 129248108 -21535445 - L1PA5 LINE L1 -1050 5096 4444 7507 36 7 0 chr11 129248108 129248180 -21535373 + L1PA5 LINE L1 5122 5192 -962 2250 73 0 0 chr11 129248180 129248453 -21535100 + AluY SINE Alu 1 273 -38 225 0 0 0 chr11 129248458 129248483 -21535070 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 7507 36 7 0 chr11 129248483 129249441 -21534112 + L1PA5 LINE L1 5195 6143 -11 2378 81 10 0 chr11 129249703 129250000 -21533553 + AluSg SINE Alu 1 300 -10 1721 119 0 4 chr11 129250096 129250332 -21533221 + AluSx SINE Alu 58 292 -20 724 253 30 30 chr11 129250332 129250464 -21533089 + MIR SINE MIR 25 159 -103 2086 124 7 3 chr11 129250464 129250762 -21532791 + AluSx SINE Alu 3 301 -11 724 253 30 30 chr11 129250762 129250827 -21532726 + MIR SINE MIR 158 222 -40 21 0 0 0 chr11 129251023 129251044 -21532509 + AT_rich Low_complexity Low_complexity 1 21 0 1980 127 7 19 chr11 129251133 129251441 -21532112 - AluSx SINE Alu -8 304 1 753 263 43 22 chr11 129251528 129251760 -21531793 - L1ME LINE L1 -342 5779 5543 1619 119 0 9 chr11 129252241 129252468 -21531085 + AluSx SINE Alu 1 225 -87 660 153 0 36 chr11 129252703 129252814 -21530739 - AluJb SINE Alu -139 173 67 2517 50 0 20 chr11 129252959 129253260 -21530293 + AluY SINE Alu 1 295 -16 1869 153 10 7 chr11 129253939 129254233 -21529320 + AluSx SINE Alu 1 295 -17 216 0 0 0 chr11 129254514 129254538 -21529015 + (A)n Simple_repeat Simple_repeat 1 24 0 495 0 0 0 chr11 129254538 129254593 -21528960 + (TA)n Simple_repeat Simple_repeat 1 55 0 1105 107 0 7 chr11 129255390 129255540 -21528013 - AluSg/x SINE Alu -15 297 149 189 0 0 0 chr11 129256294 129256315 -21527238 + (T)n Simple_repeat Simple_repeat 1 21 0 2294 107 10 0 chr11 129257809 129258109 -21525444 + AluSq SINE Alu 1 303 -10 216 0 0 0 chr11 129258428 129258452 -21525101 + (A)n Simple_repeat Simple_repeat 1 24 0 289 289 10 39 chr11 129260002 129260106 -21523447 + L2 LINE L2 2596 2696 -618 232 226 0 0 chr11 129260543 129260596 -21522957 - L2 LINE L2 -3 3269 3217 2280 88 3 26 chr11 129260757 129261065 -21522488 + AluSg SINE Alu 1 301 -9 367 276 89 8 chr11 129261316 129261439 -21522114 + L2 LINE L2 3138 3270 -2 2489 65 0 0 chr11 129261647 129261939 -21521614 - AluY SINE Alu -19 292 1 2204 90 0 4 chr11 129262374 129262651 -21520902 - AluSx SINE Alu -12 300 25 733 214 25 19 chr11 129262773 129262932 -21520621 + AluJo SINE Alu 121 280 -32 1599 161 52 14 chr11 129263003 129263289 -21520264 - AluSx SINE Alu -9 303 7 1520 195 7 34 chr11 129263340 129263632 -21519921 + AluJo SINE Alu 7 290 -22 2306 84 3 10 chr11 129263969 129264265 -21519288 + AluSg SINE Alu 1 294 -16 1671 149 96 7 chr11 129265021 129265303 -21518250 + AluSx SINE Alu 1 307 -5 696 228 0 0 chr11 129265888 129266011 -21517542 + FLAM_C SINE Alu 2 124 -19 1908 163 0 7 chr11 129266015 129266316 -21517237 - AluJb SINE Alu -2 310 12 26 0 0 0 chr11 129266326 129266352 -21517201 + AT_rich Low_complexity Low_complexity 1 26 0 426 269 101 13 chr11 129266608 129266835 -21516718 - L1MC4 LINE L1 -1 8041 7795 1012 101 0 0 chr11 129266838 129266967 -21516586 + AluSq/x SINE Alu 6 134 -178 661 214 0 0 chr11 129267073 129267204 -21516349 + FLAM_A SINE Alu 12 142 0 2224 87 0 30 chr11 129267770 129268070 -21515483 + AluY SINE Alu 1 291 -20 2447 91 0 7 chr11 129268250 129268558 -21514995 + AluSc SINE Alu 1 306 -3 242 226 0 0 chr11 129268903 129268956 -21514597 - MIR SINE MIR -6 256 204 2293 115 0 6 chr11 129269123 129269437 -21514116 + AluSx SINE Alu 1 312 0 240 169 0 4 chr11 129269979 129270186 -21513367 + AluJb SINE Alu 1 293 -9 2323 102 3 0 chr11 129270196 129270490 -21513063 - AluSq SINE Alu -18 295 1 1272 193 140 8 chr11 129270493 129270758 -21512795 - AluJb SINE Alu -12 300 1 1068 183 24 19 chr11 129270765 129270978 -21512575 - AluJo SINE Alu -12 300 87 1668 95 137 27 chr11 129271103 129271366 -21512187 + AluSx SINE Alu 20 311 -1 226 233 83 67 chr11 129272322 129272442 -21511111 + MIR3 SINE MIR 75 196 -12 255 61 0 0 chr11 129272706 129272739 -21510814 + (CAGGG)n Simple_repeat Simple_repeat 4 36 0 20735 62 3 1 chr11 129274028 129277611 -21505942 - L1PA6 LINE L1 0 6154 2561 209 250 0 21 chr11 129277756 129277804 -21505749 + L2 LINE L2 3256 3302 -11 2108 121 7 0 chr11 129277872 129278162 -21505391 + AluSp SINE Alu 1 292 -21 2377 69 0 30 chr11 129278169 129278474 -21505079 + AluY SINE Alu 3 298 -13 503 94 71 0 chr11 129278490 129278575 -21504978 + AluY SINE Alu 216 306 -5 1946 162 33 3 chr11 129281231 129281534 -21502019 - AluJb SINE Alu 0 312 1 189 293 85 0 chr11 129281534 129281616 -21501937 + MIR SINE MIR 122 210 -52 385 294 39 10 chr11 129282191 129282293 -21501260 - L2 LINE L2 0 3272 3168 228 122 41 0 chr11 129282525 129282574 -21500979 + L1MC/D LINE L1 5848 5898 -461 1091 165 6 0 chr11 129282581 129282751 -21500802 + AluJb SINE Alu 135 305 -7 2202 106 20 0 chr11 129282883 129283184 -21500369 + AluSg SINE Alu 1 307 -3 790 198 28 79 chr11 129283328 129283464 -21500089 - L1MC4 LINE L1 0 8042 7901 2159 119 9 28 chr11 129283464 129283783 -21499770 - AluSq SINE Alu 0 313 1 790 198 28 79 chr11 129283783 129284025 -21499528 - L1MC4 LINE L1 -141 7901 7592 281 146 0 21 chr11 129284050 129284098 -21499455 + Alu SINE Alu 10 56 -243 748 191 0 0 chr11 129284098 129284224 -21499329 + AluJo/FRAM SINE Alu 174 299 -13 557 155 0 0 chr11 129284300 129284384 -21499169 + AluJ/FLAM SINE Alu 2 85 -227 1557 162 13 92 chr11 129284521 129284836 -21498717 - AluJb SINE Alu -22 290 1 471 213 48 100 chr11 129284842 129285072 -21498481 + L1MC5 LINE L1 7708 7925 -36 1598 141 119 15 chr11 129285074 129285343 -21498210 - AluSg SINE Alu -9 301 5 21 0 0 0 chr11 129285777 129285798 -21497755 + AT_rich Low_complexity Low_complexity 1 21 0 431 136 0 0 chr11 129285868 129285934 -21497619 + FLAM_A SINE Alu 36 101 -41 312 330 0 19 chr11 129285984 129286007 -21497546 + L1ME4a LINE L1 5781 5803 -318 1505 195 28 14 chr11 129286007 129286289 -21497264 + AluJo SINE Alu 7 292 -20 312 330 0 19 chr11 129286289 129286368 -21497185 + L1ME4a LINE L1 5803 5881 -240 214 340 50 10 chr11 129286453 129286553 -21497000 - MIR SINE MIR -127 135 32 242 289 123 0 chr11 129286613 129286727 -21496826 + L1ME4a LINE L1 5960 6087 -34 1321 130 82 108 chr11 129286831 129287147 -21496406 + AluJb SINE Alu 1 308 -4 30 27 0 0 chr11 129287360 129287397 -21496156 + AT_rich Low_complexity Low_complexity 1 37 0 669 206 0 8 chr11 129287402 129287533 -21496020 - AluSq/x SINE Alu -182 131 2 303 297 54 9 chr11 129287538 129287649 -21495904 - L1MC/D LINE L1 -643 5599 5484 674 219 8 0 chr11 129287739 129287867 -21495686 + FLAM_A SINE Alu 2 130 -3 378 0 0 0 chr11 129288373 129288415 -21495138 + (TG)n Simple_repeat Simple_repeat 1 42 0 2143 91 11 7 chr11 129288417 129288692 -21494861 - AluSq SINE Alu -37 276 1 2116 113 27 0 chr11 129288693 129288986 -21494567 - AluSp SINE Alu -12 301 1 1107 80 0 7 chr11 129288986 129289123 -21494430 - AluSq/x SINE Alu -177 136 1 370 295 54 8 chr11 129289829 129289958 -21493595 - MER5A DNA MER1_type 0 189 55 487 159 57 0 chr11 129290001 129290089 -21493464 + FLAM_A SINE Alu 8 100 -42 332 195 37 12 chr11 129290347 129290429 -21493124 + MIR3 SINE MIR 111 194 -14 341 299 35 35 chr11 129290458 129290602 -21492951 + L2 LINE L2 3170 3313 0 2271 103 10 3 chr11 129290803 129291103 -21492450 + AluSx SINE Alu 1 302 -10 2301 99 0 3 chr11 129291134 129291417 -21492136 + AluSx SINE Alu 1 282 -30 27 0 0 0 chr11 129291480 129291507 -21492046 + AT_rich Low_complexity Low_complexity 1 27 0 228 135 0 0 chr11 129292342 129292379 -21491174 + (CCG)n Simple_repeat Simple_repeat 2 38 0 2275 102 23 0 chr11 129293652 129293956 -21489597 - AluSx SINE Alu -1 311 1 286 299 58 0 chr11 129293957 129294044 -21489509 - MIR SINE MIR -64 144 53 2371 88 0 3 chr11 129296188 129296483 -21487070 + AluSq SINE Alu 1 294 -19 2374 101 3 0 chr11 129296483 129296779 -21486774 + AluSq SINE Alu 1 297 -16 197 329 27 0 chr11 129297456 129297529 -21486024 + MIR SINE MIR 18 92 -116 233 250 0 0 chr11 129297758 129297814 -21485739 + L2 LINE L2 3258 3313 0 831 123 0 0 chr11 129297859 129297973 -21485580 - AluSg/x SINE Alu -19 293 180 1484 90 5 5 chr11 129298073 129298262 -21485291 - AluSq SINE Alu -124 189 1 2563 60 3 0 chr11 129298286 129298584 -21484969 - AluY SINE Alu -12 299 1 304 228 0 0 chr11 129298605 129298662 -21484891 - L2 LINE L2 -2 3311 3255 266 363 33 28 chr11 129298759 129298832 -21484721 - L2 LINE L2 -220 3052 2981 2115 127 20 0 chr11 129298832 129299132 -21484421 + AluJo SINE Alu 1 306 -6 266 363 33 28 chr11 129299132 129299270 -21484283 - L2 LINE L2 -291 2981 2840 202 220 40 0 chr11 129300153 129300203 -21483350 + CT-rich Low_complexity Low_complexity 5 56 0 2319 93 0 0 chr11 129301216 129301505 -21482048 + AluSg SINE Alu 3 291 -19 291 170 0 0 chr11 129302390 129302443 -21481110 + AluJ/FRAM SINE Alu 230 282 -20 2251 110 0 26 chr11 129302511 129302821 -21480732 + AluSq SINE Alu 1 302 -11 663 217 232 0 chr11 129302934 129303141 -21480412 - MIR SINE MIR -2 260 6 202 333 62 0 chr11 129303325 129303406 -21480147 + L3 LINE CR1 1128 1213 -364 445 323 42 0 chr11 129303558 129303747 -21479806 - MIR SINE MIR 0 262 66 234 237 34 0 chr11 129303747 129303806 -21479747 - tRNA-Thr-ACT tRNA tRNA -10 67 7 889 124 0 0 chr11 129303902 129304023 -21479530 - AluJo SINE Alu -16 296 176 1054 172 72 0 chr11 129304074 129304133 -21479420 - AluJo SINE Alu -119 193 140 216 0 0 0 chr11 129304133 129304157 -21479396 + (TA)n Simple_repeat Simple_repeat 2 25 0 1054 172 72 0 chr11 129304157 129304277 -21479276 - AluJo SINE Alu -172 140 1 2380 89 0 13 chr11 129304446 129304759 -21478794 + AluSp SINE Alu 1 309 -4 360 295 127 18 chr11 129304977 129305143 -21478410 + MER117 DNA MER1_type 9 192 -5 1821 168 3 3 chr11 129305176 129305467 -21478086 - AluJo SINE Alu -21 291 1 1817 163 0 24 chr11 129305696 129305991 -21477562 - AluJo SINE Alu -24 288 1 384 284 62 31 chr11 129306203 129306397 -21477156 + L2 LINE L2 3114 3313 0 2159 134 3 0 chr11 129306660 129306958 -21476595 + AluSx SINE Alu 2 300 -12 252 262 178 0 chr11 129308257 129308364 -21475189 - L2 LINE L2 -3 3310 3185 1753 247 76 46 chr11 129308730 129309365 -21474188 - L1ME3A LINE L1 -28 6142 5489 365 312 35 21 chr11 129309593 129309734 -21473819 + L2 LINE L2 3126 3268 -4 1277 279 71 53 chr11 129310472 129310772 -21472781 - L1ME4a LINE L1 -1 6120 5827 2074 121 7 10 chr11 129310772 129311070 -21472483 - AluSx SINE Alu -15 297 1 1277 279 71 53 chr11 129311070 129311681 -21471872 - L1ME4a LINE L1 -294 5827 5187 2304 122 3 3 chr11 129311681 129311993 -21471560 - AluSq SINE Alu -1 312 1 1277 279 71 53 chr11 129311993 129312076 -21471477 - L1ME4a LINE L1 -934 5187 5107 217 239 0 0 chr11 129312980 129313026 -21470527 + (TG)n Simple_repeat Simple_repeat 1 46 0 552 233 0 15 chr11 129315544 129315892 -21467661 + (CA)n Simple_repeat Simple_repeat 1 342 0 538 235 0 16 chr11 129315921 129316104 -21467449 + (CA)n Simple_repeat Simple_repeat 1 180 0 215 326 129 30 chr11 129316646 129317042 -21466511 + L2 LINE L2 2171 2605 -709 2265 101 0 28 chr11 129317127 129317444 -21466109 - AluSx SINE Alu -4 308 1 232 369 41 66 chr11 129317531 129317970 -21465583 + L2 LINE L2 2842 3269 -3 303 277 44 66 chr11 129319361 129319486 -21464067 + MIR3 SINE MIR 47 168 -40 353 257 188 0 chr11 129319486 129319630 -21463923 - MER5A DNA MER1_type 0 189 19 226 240 20 60 chr11 129320405 129320505 -21463048 + C-rich Low_complexity Low_complexity 5 100 0 228 225 0 0 chr11 129320464 129320504 -21463049 + polypyrimidine Low_complexity Low_complexity 2 41 0 298 282 47 0 chr11 129321318 129321403 -21462150 - MLT1I LTR MaLR -2 407 319 300 111 0 0 chr11 129321514 129321559 -21461994 + (CA)n Simple_repeat Simple_repeat 2 46 0 228 280 27 27 chr11 129321668 129321743 -21461810 - L2 LINE L2 -220 3052 2978 267 275 0 25 chr11 129322933 129323013 -21460540 + L2 LINE L2 3178 3255 -17 214 354 92 8 chr11 129323016 129323146 -21460407 - L2 LINE L2 -1 3312 3172 497 230 6 0 chr11 129323239 129323417 -21460136 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 254 286 6 0 chr11 129323442 129323613 -21459940 + (TGGA)n Simple_repeat Simple_repeat 1 172 0 297 303 8 0 chr11 129323631 129323750 -21459803 + (TGAA)n Simple_repeat Simple_repeat 2 121 0 622 188 12 0 chr11 129323752 129323912 -21459641 + (TGGA)n Simple_repeat Simple_repeat 4 165 0 1483 147 40 37 chr11 129325173 129325473 -21458080 + AluJb SINE Alu 11 311 -1 398 226 113 57 chr11 129325846 129326005 -21457548 + MIR3 SINE MIR 22 189 -19 564 268 42 26 chr11 129327477 129327667 -21455886 + MIR SINE MIR 9 201 -61 531 302 55 6 chr11 129328104 129328286 -21455267 + MIR SINE MIR 29 219 -43 691 288 33 76 chr11 129328297 129328400 -21455153 + L3 LINE CR1 1101 1207 -370 1750 91 121 15 chr11 129328400 129328665 -21454888 + AluSg SINE Alu 1 293 -17 691 288 33 76 chr11 129328665 129328929 -21454624 + L3 LINE CR1 1207 1452 -125 512 272 25 25 chr11 129328953 129329115 -21454438 - MIR SINE MIR 0 262 101 251 307 0 23 chr11 129330498 129330586 -21452967 + MIR3 SINE MIR 76 161 -47 2097 102 0 24 chr11 129332509 129332804 -21450749 - AluJb SINE Alu -24 288 1 385 279 134 58 chr11 129333021 129333193 -21450360 + MER5A DNA MER1_type 4 188 -1 351 222 43 51 chr11 129333259 129333376 -21450177 - MER5B DNA MER1_type -1 177 62 2035 133 3 0 chr11 129333376 129333677 -21449876 - AluJb SINE Alu -10 302 1 3476 146 44 10 chr11 129333687 129334277 -21449276 - L1MB4 LINE L1 -1 6179 5570 1728 86 0 0 chr11 129334294 129334538 -21449015 - AluSg SINE Alu 0 305 62 245 300 29 0 chr11 129334575 129334645 -21448908 - L2 LINE L2 0 3313 3242 1172 267 101 0 chr11 129334824 129335172 -21448381 + MLT1J1 LTR MaLR 64 446 0 685 312 50 28 chr11 129335560 129335877 -21447676 - L3 LINE CR1 -3 1574 1251 345 264 136 24 chr11 129336657 129336782 -21446771 - MIR SINE MIR -111 151 13 316 350 57 6 chr11 129336884 129337041 -21446512 + MIR SINE MIR 57 221 -41 949 163 26 0 chr11 129337150 129337340 -21446213 - AluJo SINE Alu 0 312 118 180 269 45 0 chr11 129338352 129338419 -21445134 - L2 LINE L2 -21 3292 3223 224 247 49 37 chr11 129338452 129338533 -21445020 - MIR SINE MIR -118 144 63 335 249 168 32 chr11 129338979 129339164 -21444389 + MIR SINE MIR 51 260 -2 195 179 36 54 chr11 129339292 129339348 -21444205 + L3 LINE CR1 1268 1322 -255 374 297 11 0 chr11 129339375 129339466 -21444087 + L3 LINE CR1 1390 1481 -96 304 325 65 35 chr11 129339493 129339662 -21443891 - MIR SINE MIR -50 212 39 294 241 181 0 chr11 129340164 129340247 -21443306 - MIR SINE MIR -3 259 162 2153 93 33 3 chr11 129341619 129341919 -21441634 - AluSc SINE Alu 0 309 1 184 261 72 0 chr11 129342497 129342566 -21440987 - MIR SINE MIR -142 120 47 325 243 87 0 chr11 129342975 129343078 -21440475 + MIR SINE MIR 30 141 -67 1539 182 52 22 chr11 129343109 129343433 -21440120 + MLT1A1 LTR MaLR 26 359 -6 428 261 199 11 chr11 129343707 129343883 -21439670 + MIR SINE MIR 48 256 -6 215 231 0 0 chr11 129343886 129343925 -21439628 + polypyrimidine Low_complexity Low_complexity 1 39 0 306 241 83 45 chr11 129344331 129344464 -21439089 + MIR SINE MIR 64 201 -61 621 288 41 14 chr11 129347564 129347783 -21435770 + MIR SINE MIR 6 230 -32 214 191 15 29 chr11 129348018 129348086 -21435467 + GA-rich Low_complexity Low_complexity 2 68 0 323 269 161 48 chr11 129350212 129350398 -21433155 + MIR SINE MIR 56 262 0 1323 162 32 104 chr11 129350424 129350732 -21432821 - AluJb SINE Alu -18 294 9 2150 103 0 10 chr11 129350972 129351273 -21432280 - AluSg SINE Alu -12 298 1 2405 113 8 33 chr11 129351609 129351973 -21431580 + THE1A LTR MaLR 1 355 0 3671 73 4 0 chr11 129351973 129352468 -21431085 + THE1A-int LTR MaLR 1 497 -1083 13378 133 32 115 chr11 129352480 129355568 -21427985 + L1PA7 LINE L1 12 2841 -3305 2144 117 3 0 chr11 129355568 129355876 -21427677 + AluSg SINE Alu 1 309 -1 18081 87 2 1 chr11 129355876 129359100 -21424453 + L1PA7 LINE L1 2914 6154 0 7927 91 7 19 chr11 129359100 129360214 -21423339 + THE1A-int LTR MaLR 480 1580 0 2451 91 20 11 chr11 129360214 129360564 -21422989 + THE1A LTR MaLR 1 353 -2 1119 239 4 15 chr11 129364812 129365072 -21418481 + MIR SINE MIR 6 262 0 381 187 0 0 chr11 129365266 129365341 -21418212 + (TG)n Simple_repeat Simple_repeat 1 75 0 1844 157 41 0 chr11 129367837 129368130 -21415423 - AluJo SINE Alu -7 305 1 2422 101 0 0 chr11 129368253 129368561 -21414992 + AluSx SINE Alu 1 308 -4 354 319 118 90 chr11 129368698 129369087 -21414466 + L2 LINE L2 2865 3264 -8 2418 72 7 16 chr11 129369425 129369732 -21413821 + AluY SINE Alu 1 304 -7 403 239 34 0 chr11 129369807 129369895 -21413658 - MIR3 SINE MIR -4 204 114 414 199 152 36 chr11 129370784 129370959 -21412594 + MLT1J LTR MaLR 1 196 -315 301 321 65 14 chr11 129371951 129372166 -21411387 - MARNA DNA Mariner -218 368 143 2434 76 3 0 chr11 129374449 129374740 -21408813 - AluSq SINE Alu -21 292 1 521 232 0 0 chr11 129374745 129374840 -21408713 + MIR SINE MIR 55 149 -59 615 247 77 67 chr11 129374905 129375217 -21408336 + L1ME2 LINE L1 5840 6154 -10 267 295 0 13 chr11 129377568 129377646 -21405907 + (CA)n Simple_repeat Simple_repeat 1 77 0 195 42 0 0 chr11 129378547 129378571 -21404982 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 207 0 0 0 chr11 129378619 129378642 -21404911 + (A)n Simple_repeat Simple_repeat 1 23 0 325 256 85 23 chr11 129378793 129378922 -21404631 + MIR SINE MIR 120 256 -6 264 326 34 25 chr11 129379960 129380199 -21403354 + L1MC4a LINE L1 5764 6004 -1804 2279 103 3 28 chr11 129380327 129380646 -21402907 + AluSq SINE Alu 2 312 -1 340 185 141 0 chr11 129380685 129380777 -21402776 + L1MA10 LINE L1 6220 6324 -10 1038 157 0 23 chr11 129381115 129381287 -21402266 + MER1B DNA MER1_type 57 224 -73 518 75 0 62 chr11 129381285 129381365 -21402188 + MER1B DNA MER1_type 255 329 0 * 262 279 16 0 chr11 129381494 129381555 -21401998 - MER5A DNA MER1_type -95 94 33 198 183 50 50 chr11 129381506 129381566 -21401987 + MER5B DNA MER1_type 109 168 -10 * 216 292 56 14 chr11 129382885 129382957 -21400596 - MIR SINE MIR -24 238 164 268 284 37 0 chr11 129382976 129383085 -21400468 + L1MC4 LINE L1 7929 8041 -1 390 314 52 26 chr11 129383097 129383250 -21400303 - MIR SINE MIR -86 176 20 30 27 0 0 chr11 129384392 129384429 -21399124 + AT_rich Low_complexity Low_complexity 1 37 0 317 291 70 52 chr11 129384434 129384647 -21398906 - MIR SINE MIR -44 218 2 2239 93 24 0 chr11 129385120 129385410 -21398143 - AluSx SINE Alu -15 297 1 2454 71 7 3 chr11 129385780 129386076 -21397477 + AluSp SINE Alu 1 297 -16 1946 156 0 10 chr11 129386086 129386388 -21397165 + AluSx SINE Alu 1 299 -13 987 163 0 0 chr11 129386404 129386545 -21397008 + AluJb SINE Alu 49 189 -123 883 120 0 0 chr11 129386576 129386701 -21396852 + AluJb SINE Alu 183 307 -5 2300 116 0 0 chr11 129387567 129387868 -21395685 - AluSx SINE Alu -11 301 1 257 193 35 0 chr11 129387873 129387930 -21395623 + MER5A DNA MER1_type 53 111 -78 400 271 62 8 chr11 129388291 129388514 -21395039 - LTR16B LTR ERVL -15 449 130 894 229 27 69 chr11 129389040 129389302 -21394251 + MIR SINE MIR 2 252 -10 261 274 131 0 chr11 129389333 129389417 -21394136 - L2 LINE L2 -18 3254 3160 255 311 277 11 chr11 129390182 129390442 -21393111 + L2 LINE L2 2934 3262 -10 1175 42 0 0 chr11 129390696 129390839 -21392714 + L1PA13 LINE L1 6014 6156 -7 1037 31 0 8 chr11 129390839 129390968 -21392585 + L1PA4 LINE L1 6023 6151 -4 2148 106 0 7 chr11 129392617 129392929 -21390624 + AluSq SINE Alu 1 310 0 181 297 79 79 chr11 129393213 129393314 -21390239 - L2 LINE L2 -27 3286 3186 352 109 39 3 chr11 129393699 129393931 -21389622 + AluJo SINE Alu 1 298 -4 1796 183 20 0 chr11 129394431 129394737 -21388816 + AluJo SINE Alu 1 312 0 2349 119 16 89 chr11 129395398 129395893 -21387660 + L1MB4 LINE L1 5721 6179 -1 2298 98 3 3 chr11 129396957 129397263 -21386290 + AluSg SINE Alu 1 306 -4 2527 77 0 0 chr11 129397263 129397560 -21385993 + AluSx SINE Alu 1 298 -14 611 232 153 12 chr11 129397578 129397819 -21385734 + HAL1 LINE L1 2229 2503 -4 1752 161 7 14 chr11 129397829 129398109 -21385444 + AluJo SINE Alu 6 283 -29 1161 173 0 58 chr11 129398109 129398335 -21385218 + AluJo SINE Alu 83 295 -17 200 303 30 0 chr11 129398549 129398615 -21384938 + MIR SINE MIR 83 150 -112 524 273 48 53 chr11 129399127 129399253 -21384300 - MIR SINE MIR -40 222 96 2222 128 3 0 chr11 129399253 129399551 -21384002 + AluSx SINE Alu 1 299 -13 524 273 48 53 chr11 129399551 129399633 -21383920 - MIR SINE MIR -166 96 15 1474 175 50 29 chr11 129399677 129399957 -21383596 + AluJo SINE Alu 16 301 -11 2067 144 13 0 chr11 129400778 129401077 -21382476 + AluSx SINE Alu 3 305 -7 1854 146 16 48 chr11 129401092 129401408 -21382145 + AluSq SINE Alu 4 309 -4 231 36 0 0 chr11 129402470 129402498 -21381055 + (CTG)n Simple_repeat Simple_repeat 2 29 0 293 0 27 0 chr11 129403694 129403731 -21379822 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 34 24 0 0 chr11 129403740 129403781 -21379772 + AT_rich Low_complexity Low_complexity 1 41 0 280 243 43 29 chr11 129403824 129403894 -21379659 + MIR3 SINE MIR 90 160 -48 234 217 0 0 chr11 129404105 129404151 -21379402 + L3 LINE CR1 1527 1572 -5 2225 118 3 3 chr11 129404180 129404493 -21379060 + AluSq SINE Alu 1 313 0 2320 118 0 0 chr11 129405614 129405918 -21377635 + AluSx SINE Alu 1 304 -8 226 219 0 0 chr11 129406537 129406578 -21376975 + polypyrimidine Low_complexity Low_complexity 2 42 0 339 339 8 8 chr11 129406760 129406884 -21376669 + GA-rich Low_complexity Low_complexity 5 128 0 2215 74 70 0 chr11 129407189 129407474 -21376079 + AluSp SINE Alu 2 306 -7 359 248 118 7 chr11 129407709 129407862 -21375691 + L1MB3 LINE L1 4477 4646 -1500 673 181 21 5 chr11 129407911 129408082 -21375471 + L1MB3 LINE L1 5313 5491 -684 1451 148 0 9 chr11 129408082 129408292 -21375261 + AluJo SINE Alu 87 294 -18 1085 96 0 7 chr11 129408292 129408428 -21375125 + AluSq/x SINE Alu 1 135 -178 2063 113 0 0 chr11 129408428 129408693 -21374860 + AluSg SINE Alu 1 265 -45 550 115 0 10 chr11 129408694 129408795 -21374758 + L1MB3 LINE L1 5522 5622 -561 974 175 19 0 chr11 129408845 129409005 -21374548 + FRAM SINE Alu 1 157 -19 3457 143 12 24 chr11 129409017 129409197 -21374356 + L1MB3 LINE L1 5597 5778 -405 2108 98 58 0 chr11 129409197 129409473 -21374080 + AluSg SINE Alu 1 292 -18 3457 143 12 24 chr11 129409473 129409886 -21373667 + L1MB3 LINE L1 5778 6183 0 444 286 103 37 chr11 129409889 129410155 -21373398 + L1MC/D LINE L1 5151 5431 -770 1869 170 0 7 chr11 129410230 129410546 -21373007 + AluJb SINE Alu 1 314 0 1279 197 53 45 chr11 129410625 129410774 -21372779 + L1MC/D LINE L1 4477 4623 -1523 2468 80 3 0 chr11 129410774 129411073 -21372480 - AluSp SINE Alu -13 300 1 1279 197 53 45 chr11 129411073 129411298 -21372255 + L1MC/D LINE L1 4623 4854 -1292 250 174 18 147 chr11 129411298 129411407 -21372146 + L1MC/D LINE L1 5730 5824 -1984 1853 174 7 0 chr11 129411626 129411920 -21371633 - AluJb SINE Alu -16 296 1 2038 99 48 14 chr11 129411945 129412238 -21371315 + AluSg SINE Alu 1 303 -7 2186 102 23 3 chr11 129412521 129412825 -21370728 + AluSq SINE Alu 1 310 -3 2237 122 0 3 chr11 129413544 129413855 -21369698 - AluSx SINE Alu 0 312 3 2270 104 0 7 chr11 129414574 129414871 -21368682 + AluSg SINE Alu 1 295 -15 324 241 46 0 chr11 129414974 129415061 -21368492 - MIR SINE MIR -157 105 15 1388 187 49 35 chr11 129415105 129415389 -21368164 + AluJo SINE Alu 16 303 -9 2006 145 14 0 chr11 129416209 129416499 -21367054 + AluSx SINE Alu 3 296 -16 1824 149 16 48 chr11 129416514 129416830 -21366723 + AluSq SINE Alu 4 309 -4 284 0 28 0 chr11 129417892 129417928 -21365625 + (CTG)n Simple_repeat Simple_repeat 2 38 0 257 0 30 0 chr11 129419124 129419157 -21364396 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 212 263 38 0 chr11 129419167 129419247 -21364306 + A-rich Low_complexity Low_complexity 2 84 0 280 243 43 29 chr11 129419250 129419320 -21364233 + MIR3 SINE MIR 90 160 -48 234 217 0 0 chr11 129419531 129419577 -21363976 + L3 LINE CR1 1527 1572 -5 2189 128 3 3 chr11 129419606 129419919 -21363634 + AluSq SINE Alu 1 313 0 2320 118 0 0 chr11 129421030 129421334 -21362219 + AluSx SINE Alu 1 304 -8 339 339 8 8 chr11 129422179 129422303 -21361250 + GA-rich Low_complexity Low_complexity 5 128 0 2164 81 70 0 chr11 129422610 129422895 -21360658 + AluSp SINE Alu 2 306 -7 359 248 118 7 chr11 129423130 129423283 -21360270 + L1M3 LINE L1 4477 4646 -1500 * 651 195 25 31 chr11 129423281 129423503 -21360050 + L1M3 LINE L1 5276 5491 -689 1442 148 0 10 chr11 129423503 129423712 -21359841 + AluJo SINE Alu 87 293 -19 1043 104 0 7 chr11 129423712 129423847 -21359706 + AluSq/x SINE Alu 1 134 -178 2080 136 7 3 chr11 129423848 129424149 -21359404 + AluSx SINE Alu 1 302 -10 2175 113 0 0 chr11 129424923 129425206 -21358347 + AluSx SINE Alu 1 283 -29 1084 125 0 20 chr11 129425314 129425466 -21358087 - AluSx SINE Alu -153 159 11 598 240 11 0 chr11 129425499 129425674 -21357879 + L1M4 LINE L1 2250 2426 -3720 236 0 0 0 chr11 129425729 129425762 -21357791 - L1MA3 LINE L1 0 6305 6273 664 208 89 50 chr11 129425762 129425919 -21357634 + MER34C LTR ERV1 25 193 -392 2641 30 0 3 chr11 129425919 129426216 -21357337 - AluY SINE Alu -15 296 1 664 208 89 50 chr11 129426216 129426260 -21357293 + MER34C LTR ERV1 193 234 -351 320 239 54 0 chr11 129426457 129426549 -21357004 + LTR48 LTR ERV1 379 475 -312 286 263 101 42 chr11 129426556 129426684 -21356869 + MER34C LTR ERV1 356 504 -81 2295 77 17 3 chr11 129426684 129426971 -21356582 + AluSg SINE Alu 2 292 -18 286 263 101 42 chr11 129426971 129427059 -21356494 + MER34C LTR ERV1 504 585 0 387 221 35 48 chr11 129427059 129427149 -21356404 + L1M4 LINE L1 2434 2523 -3623 2003 163 10 0 chr11 129427149 129427450 -21356103 + AluJb SINE Alu 1 304 -8 387 221 35 48 chr11 129427450 129427504 -21356049 + L1M4 LINE L1 2523 2576 -3570 243 0 0 0 chr11 129427521 129427548 -21356005 + (CA)n Simple_repeat Simple_repeat 2 28 0 1864 170 3 7 chr11 129427574 129427862 -21355691 + AluJo SINE Alu 1 287 -25 2177 73 0 94 chr11 129427869 129428211 -21355342 + AluY SINE Alu 1 310 -1 2767 230 63 31 chr11 129428218 129428312 -21355241 + L1M4 LINE L1 3758 3848 -2298 2103 131 0 13 chr11 129428312 129428625 -21354928 + AluSx SINE Alu 1 309 -3 2767 230 63 31 chr11 129428625 129428671 -21354882 + L1M4 LINE L1 3848 3891 -2255 2251 111 0 0 chr11 129428671 129428960 -21354593 - AluSx SINE Alu -23 289 1 2767 230 63 31 chr11 129428960 129429304 -21354249 + L1M4 LINE L1 3891 4223 -1923 2411 85 3 0 chr11 129429304 129429610 -21353943 + AluSp SINE Alu 1 307 -6 2767 230 63 31 chr11 129429610 129429982 -21353571 + L1M4 LINE L1 4223 4653 -1493 1837 163 38 3 chr11 129429982 129430271 -21353282 + AluJb SINE Alu 1 299 -13 2767 230 63 31 chr11 129430271 129430395 -21353158 + L1M4 LINE L1 4653 4772 -1374 2242 87 7 10 chr11 129430397 129430695 -21352858 - AluSx SINE Alu -15 297 1 352 298 0 0 chr11 129430712 129430796 -21352757 - MER5A DNA MER1_type -48 141 58 206 233 78 78 chr11 129430873 129430989 -21352564 + L2 LINE L2 3182 3297 -16 221 303 30 0 chr11 129431259 129431325 -21352228 - MIR SINE MIR -6 256 189 2210 100 0 10 chr11 129431358 129431649 -21351904 - AluSq SINE Alu -4 309 22 546 222 44 129 chr11 129431761 129432009 -21351544 - MIR SINE MIR -11 251 25 180 256 0 0 chr11 129432061 129432104 -21351449 - MIR SINE MIR -122 86 44 2347 88 0 3 chr11 129433558 129433853 -21349700 + AluSx SINE Alu 1 294 -18 2034 124 3 20 chr11 129434340 129434646 -21348907 - AluSx SINE Alu -11 301 1 238 240 39 106 chr11 129434774 129434878 -21348675 + L3b LINE CR1 1298 1394 -189 2518 74 0 0 chr11 129435106 129435417 -21348136 - AluY SINE Alu 0 311 1 1544 191 69 0 chr11 129435614 129435891 -21347662 - AluJo SINE Alu -16 296 1 1020 122 0 0 chr11 129436160 129436291 -21347262 + AluJo SINE Alu 4 134 -178 2126 125 17 0 chr11 129436569 129436865 -21346688 + AluSx SINE Alu 1 301 -11 434 306 27 88 chr11 129436954 129437218 -21346335 + L2 LINE L2 899 1135 -2179 2185 111 0 13 chr11 129437218 129437525 -21346028 - AluSx SINE Alu -9 303 1 434 306 27 88 chr11 129437525 129437636 -21345917 + L2 LINE L2 1135 1251 -2063 477 70 0 0 chr11 129437638 129437695 -21345858 - AluSq/x SINE Alu -184 129 73 181 343 24 87 chr11 129437695 129437902 -21345651 + L2 LINE L2 1301 1494 -1820 892 143 0 8 chr11 129438119 129438252 -21345301 - FLAM_C SINE Alu -1 132 1 277 375 38 34 chr11 129438357 129438621 -21344932 + L2 LINE L2 2586 2850 -464 182 260 60 0 chr11 129438670 129438720 -21344833 + L2 LINE L2 3002 3054 -218 820 246 84 98 chr11 129438884 129439449 -21344104 - MLT1H1 LTR MaLR 0 555 1 2024 141 3 7 chr11 129439652 129439942 -21343611 + AluJb SINE Alu 1 289 -23 2102 103 62 3 chr11 129440674 129440966 -21342587 - AluSc SINE Alu 0 309 1 2255 231 57 56 chr11 129441230 129441542 -21342011 - L1ME2 LINE L1 -34 6130 5820 194 62 31 0 chr11 129441542 129441574 -21341979 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2003 149 0 0 chr11 129441582 129441858 -21341695 - AluSx SINE Alu -36 276 1 2255 231 57 56 chr11 129441858 129442673 -21340880 - L1ME2 LINE L1 -350 5814 4987 1078 175 0 0 chr11 129442725 129442891 -21340662 - FAM SINE Alu -6 169 4 793 202 38 63 chr11 129442891 129443129 -21340424 - L1ME2 LINE L1 -1152 4994 4763 1928 134 0 51 chr11 129443129 129443442 -21340111 + AluSx SINE Alu 2 298 -14 2149 109 23 3 chr11 129444113 129444417 -21339136 - AluSq SINE Alu -3 310 1 2038 99 48 14 chr11 129444700 129444993 -21338560 - AluSg SINE Alu -7 303 1 1853 174 7 0 chr11 129445018 129445312 -21338241 + AluJb SINE Alu 1 296 -16 250 174 18 147 chr11 129445531 129445640 -21337913 - L1MC/D LINE L1 -1984 5824 5730 1298 195 53 45 chr11 129445640 129445865 -21337688 - L1MC/D LINE L1 -1292 4854 4623 2371 83 3 7 chr11 129445865 129446166 -21337387 + AluSp SINE Alu 1 300 -13 1298 195 53 45 chr11 129446166 129446315 -21337238 - L1MC/D LINE L1 -1523 4623 4477 1867 170 0 7 chr11 129446394 129446710 -21336843 - AluJb SINE Alu 0 314 1 432 288 99 38 chr11 129446785 129447054 -21336499 - L1MC/D LINE L1 -770 5376 5146 3487 143 12 22 chr11 129447054 129447467 -21336086 - L1MB3 LINE L1 0 6183 5776 2120 98 58 0 chr11 129447467 129447743 -21335810 - AluSg SINE Alu -18 292 1 3487 143 12 22 chr11 129447743 129447922 -21335631 - L1MB3 LINE L1 -407 5776 5597 999 169 19 0 chr11 129447934 129448094 -21335459 - FRAM SINE Alu -19 157 1 550 126 0 9 chr11 129448144 129448252 -21335301 - L1MB3 LINE L1 -561 5622 5512 1863 110 0 8 chr11 129448254 129448499 -21335054 - AluSq SINE Alu -54 259 17 708 204 8 0 chr11 129448505 129448637 -21334916 - FLAM_A SINE Alu 0 133 1 263 250 83 53 chr11 129448669 129448801 -21334752 - L1ME LINE L1 -445 5676 5541 439 252 30 104 chr11 129448823 129449035 -21334518 - L1ME LINE L1 -730 5432 5273 416 310 29 21 chr11 129449020 129449209 -21334344 - L1MB3 LINE L1 -814 5332 5177 * 548 232 42 42 chr11 129449233 129449375 -21334178 - MIR SINE MIR -2 260 119 2194 106 17 0 chr11 129449386 129449678 -21333875 + AluSx SINE Alu 1 297 -15 1185 117 12 18 chr11 129449678 129449840 -21333713 + AluSg/x SINE Alu 133 295 -15 404 330 108 21 chr11 129449933 129450266 -21333287 - L1MB3 LINE L1 -978 5168 4807 * 409 283 100 88 chr11 129450258 129450430 -21333123 - L1MB3 LINE L1 -1864 4282 4114 2554 50 0 0 chr11 129450430 129450727 -21332826 + AluY SINE Alu 1 297 -14 409 283 100 88 chr11 129450727 129450837 -21332716 - L1MB3 LINE L1 -2032 4114 4007 2115 128 10 0 chr11 129450837 129451126 -21332427 + AluSx SINE Alu 1 292 -20 409 283 100 88 chr11 129451126 129451252 -21332301 - L1MB3 LINE L1 -2139 4007 3868 271 213 16 0 chr11 129451755 129451816 -21331737 + L2 LINE L2 3226 3287 -26 25 0 0 0 chr11 129452140 129452165 -21331388 + GC_rich Low_complexity Low_complexity 1 25 0 180 256 0 0 chr11 129454119 129454162 -21329391 + MIR SINE MIR 44 86 -122 546 222 44 129 chr11 129454214 129454462 -21329091 + MIR SINE MIR 25 251 -11 2210 100 0 10 chr11 129454574 129454865 -21328688 + AluSq SINE Alu 22 309 -4 221 303 30 0 chr11 129454898 129454964 -21328589 + MIR SINE MIR 189 256 -6 206 233 78 78 chr11 129455234 129455350 -21328203 - L2 LINE L2 -16 3297 3182 352 298 0 0 chr11 129455427 129455511 -21328042 + MER5A DNA MER1_type 58 141 -48 2383 98 0 0 chr11 129455528 129455834 -21327719 + AluSx SINE Alu 1 306 -6 2482 86 0 0 chr11 129456352 129456654 -21326899 + AluSg SINE Alu 1 302 -8 1167 162 143 0 chr11 129456968 129457178 -21326375 - AluJo SINE Alu -33 279 40 358 90 45 112 chr11 129457225 129457314 -21326239 + AluJ/FRAM SINE Alu 220 302 0 2213 92 46 0 chr11 129457570 129457852 -21325701 + AluSq SINE Alu 1 295 -18 24 0 0 0 chr11 129457876 129457900 -21325653 + AT_rich Low_complexity Low_complexity 1 24 0 2157 127 0 3 chr11 129458081 129458388 -21325165 + AluSx SINE Alu 1 306 -6 220 318 114 102 chr11 129458477 129458713 -21324840 - L2 LINE L2 -4 3268 3030 306 86 0 52 chr11 129458763 129458821 -21324732 - Alu SINE Alu -247 55 1 310 348 137 16 chr11 129458946 129459259 -21324294 - L2 LINE L2 -524 2790 2440 2066 98 7 18 chr11 129459316 129459626 -21323927 - AluSx SINE Alu 0 307 1 401 273 33 25 chr11 129459677 129459798 -21323755 - MIR SINE MIR -94 168 47 188 381 103 0 chr11 129459819 129459945 -21323608 - L2 LINE L2 -959 2355 2217 2347 88 0 3 chr11 129460682 129460977 -21322576 + AluSx SINE Alu 1 294 -18 2104 125 3 13 chr11 129461464 129461768 -21321785 - AluSx SINE Alu -11 301 1 238 240 39 106 chr11 129461896 129462000 -21321553 + L3b LINE CR1 1298 1394 -189 2581 61 0 3 chr11 129462228 129462540 -21321013 - AluY SINE Alu 0 311 1 435 78 0 2 chr11 129463160 129463331 -21320222 + AluSq SINE Alu 94 300 -12 307 325 190 46 chr11 129463398 129463767 -21319786 - L2 LINE L2 -12 3260 2839 502 271 208 27 chr11 129463833 129464198 -21319355 - MLT1H LTR MaLR 0 549 119 308 259 116 27 chr11 129464332 129464444 -21319109 + MIR3 SINE MIR 39 160 -48 2225 121 0 7 chr11 129465397 129465695 -21317858 - AluSx SINE Alu -16 296 1 281 294 44 56 chr11 129465732 129465912 -21317641 - L2 LINE L2 -229 3043 2866 2173 103 3 0 chr11 129465923 129466244 -21317309 - AluSx SINE Alu 0 322 1 712 323 259 24 chr11 129466285 129466675 -21316878 - L2 LINE L2 -584 2730 2433 1883 131 6 58 chr11 129466675 129466987 -21316566 - AluJo SINE Alu -16 296 1 712 323 259 24 chr11 129466987 129467473 -21316080 - L2 LINE L2 -881 2433 1648 252 287 229 0 chr11 129468838 129468960 -21314593 - MIR3 SINE MIR -23 185 36 2285 87 24 0 chr11 129469201 129469488 -21314065 + AluSq SINE Alu 1 294 -19 187 43 0 0 chr11 129469975 129469998 -21313555 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 2078 127 7 0 chr11 129469998 129470274 -21313279 - AluSx SINE Alu -28 284 7 2495 183 106 2 chr11 129470317 129470668 -21312885 + LTR49 LTR ERV1 3 431 -164 1926 136 14 0 chr11 129470668 129470962 -21312591 - AluSx SINE Alu -14 298 1 2495 183 106 2 chr11 129470962 129471147 -21312406 + LTR49 LTR ERV1 431 595 0 2166 98 0 3 chr11 129473404 129473699 -21309854 - AluSq SINE Alu -19 294 1 2111 104 0 29 chr11 129473775 129474083 -21309470 + AluSq SINE Alu 1 299 -14 183 236 0 135 chr11 129475433 129475522 -21308031 + MIR SINE MIR 30 106 -102 490 271 186 5 chr11 129475527 129475737 -21307816 + MIR SINE MIR 1 248 -14 1888 109 65 10 chr11 129475827 129476121 -21307432 + AluSx SINE Alu 1 310 -2 1010 218 55 9 chr11 129476190 129476410 -21307143 - MIR SINE MIR 0 262 33 2126 111 0 3 chr11 129476722 129477019 -21306534 + AluSg SINE Alu 1 296 -14 246 264 164 43 chr11 129478359 129478499 -21305054 - L3b LINE CR1 -126 1457 1301 2097 122 0 0 chr11 129483338 129483650 -21299903 - AluSx SINE Alu 0 312 1 1683 168 27 13 chr11 129484341 129484639 -21298914 + AluJo SINE Alu 1 302 -10 2130 97 0 0 chr11 129484639 129484942 -21298611 + AluSg SINE Alu 1 303 0 1598 149 56 3 chr11 129487028 129487316 -21296237 + AluJb SINE Alu 2 304 -8 888 176 13 0 chr11 129487615 129487774 -21295779 - FRAM SINE Alu -16 160 1 180 0 0 0 chr11 129487980 129488000 -21295553 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2170 112 0 16 chr11 129488662 129488975 -21294578 + AluSx SINE Alu 1 308 -4 1491 184 20 20 chr11 129489180 129489484 -21294069 - AluJb SINE Alu -8 304 1 510 149 0 0 chr11 129489689 129489763 -21293790 + MER81 DNA DNA 5 78 -36 2126 92 0 7 chr11 129489981 129490276 -21293277 - AluSc SINE Alu -16 293 1 2118 106 3 10 chr11 129490307 129490609 -21292944 - AluSx SINE Alu -12 300 1 1776 150 0 0 chr11 129490972 129491238 -21292315 - AluSx SINE Alu -46 266 1 1410 212 41 0 chr11 129491676 129491968 -21291585 - AluJo SINE Alu -8 304 1 5876 206 33 8 chr11 129491968 129493314 -21290239 - L1 LINE L1 -2065 4081 2703 1771 153 16 29 chr11 129493317 129493625 -21289928 + AluSq SINE Alu 1 304 -9 1263 146 12 32 chr11 129493625 129493764 -21289789 + L1MA6 LINE L1 6054 6187 -113 2081 97 7 7 chr11 129493764 129494064 -21289489 + AluSc SINE Alu 1 300 -9 1263 146 12 32 chr11 129494064 129494171 -21289382 + L1MA6 LINE L1 6187 6295 -5 1485 194 10 13 chr11 129494179 129494483 -21289070 + AluJo SINE Alu 1 303 -9 951 243 127 4 chr11 129494622 129494881 -21288672 + L2 LINE L2 3023 3313 0 1901 113 32 0 chr11 129495076 129495360 -21288193 - AluSg1 SINE Alu -16 293 1 819 137 15 0 chr11 129495392 129495523 -21288030 + FLAM_C SINE Alu 1 133 0 1260 109 6 0 chr11 129495527 129495701 -21287852 + AluSg/x SINE Alu 83 257 -53 1817 142 10 3 chr11 129495784 129496080 -21287473 - AluSx SINE Alu -13 299 2 910 122 8 0 chr11 129496797 129496928 -21286625 + AluSg SINE Alu 1 132 -178 1909 117 6 22 chr11 129497624 129497940 -21285613 + AluSq SINE Alu 3 313 0 1127 211 30 15 chr11 129498385 129498655 -21284898 + AluJb SINE Alu 1 274 -38 180 0 0 0 chr11 129498662 129498682 -21284871 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1813 151 7 0 chr11 129498780 129499071 -21284482 + AluSp SINE Alu 1 293 -20 584 235 116 56 chr11 129499316 129499567 -21283986 - L2 LINE L2 0 3313 3048 421 135 0 0 chr11 129499567 129499641 -21283912 + AluSp/q SINE Alu 235 308 -5 469 286 46 25 chr11 129499644 129499810 -21283743 - L2 LINE L2 -256 3057 2885 1726 184 0 7 chr11 129499810 129500120 -21283433 + AluJo SINE Alu 1 308 -4 469 286 46 25 chr11 129500120 129500149 -21283404 - L2 LINE L2 -428 2885 2858 242 296 14 14 chr11 129500243 129500314 -21283239 - L2 LINE L2 -668 2646 2576 1963 143 23 0 chr11 129500426 129500727 -21282826 + AluSx SINE Alu 1 308 -4 1393 194 53 10 chr11 129500729 129501028 -21282525 + AluJo SINE Alu 1 312 0 1766 146 19 10 chr11 129501230 129501539 -21282014 + AluSx SINE Alu 1 312 0 789 199 53 130 chr11 129501543 129501723 -21281830 + MIR SINE MIR 21 176 -86 1982 132 10 13 chr11 129501723 129502034 -21281519 + AluSx SINE Alu 1 310 -2 789 199 53 130 chr11 129502034 129502115 -21281438 + MIR SINE MIR 176 262 0 717 231 30 6 chr11 129502260 129502429 -21281124 - MER58A DNA MER1_type -7 217 45 1907 112 25 3 chr11 129502433 129502718 -21280835 + AluSx SINE Alu 1 291 -21 197 225 25 0 chr11 129503425 129503465 -21280088 - L2 LINE L2 -98 3174 3134 180 0 0 0 chr11 129503545 129503565 -21279988 + (GGAA)n Simple_repeat Simple_repeat 3 22 0 259 362 67 39 chr11 129503675 129503929 -21279624 - L2 LINE L2 -509 2805 2545 652 144 0 0 chr11 129504020 129504124 -21279429 - FLAM_C SINE Alu -4 139 36 741 175 148 127 chr11 129504128 129504466 -21279087 + MLT1A2 LTR MaLR 30 374 0 180 111 0 0 chr11 129505305 129505332 -21278221 + (TCC)n Simple_repeat Simple_repeat 1 27 0 2016 133 3 0 chr11 129506750 129507050 -21276503 - AluSx SINE Alu -10 302 2 416 346 164 13 chr11 129507313 129507611 -21275942 - L2 LINE L2 0 3272 2930 1661 163 0 24 chr11 129507719 129508014 -21275539 + AluJo SINE Alu 1 288 -24 1673 168 3 3 chr11 129508243 129508534 -21275019 + AluJo SINE Alu 1 291 -21 369 295 127 18 chr11 129508567 129508733 -21274820 - MER117 DNA MER1_type -5 192 9 2216 85 0 13 chr11 129508957 129509264 -21274289 - AluSp SINE Alu -10 303 1 944 178 72 0 chr11 129509433 129509553 -21274000 + AluJo SINE Alu 1 140 -172 180 0 0 0 chr11 129509553 129509573 -21273980 + (TA)n Simple_repeat Simple_repeat 2 21 0 944 178 72 0 chr11 129509573 129509632 -21273921 + AluJo SINE Alu 140 193 -119 828 124 0 0 chr11 129509683 129509804 -21273749 + AluJo SINE Alu 176 296 -16 239 237 34 0 chr11 129509900 129509959 -21273594 + tRNA-Thr-ACT tRNA tRNA 7 67 -10 474 323 42 0 chr11 129509959 129510148 -21273405 + MIR SINE MIR 66 262 0 217 333 62 0 chr11 129510301 129510382 -21273171 - L3 LINE CR1 -364 1213 1128 726 205 240 0 chr11 129510573 129510773 -21272780 + MIR SINE MIR 13 260 -2 2152 95 14 0 chr11 129510886 129511180 -21272373 - AluSq SINE Alu -10 303 6 444 317 77 62 chr11 129511181 129511519 -21272034 - L2 LINE L2 -12 3260 2918 647 273 62 74 chr11 129511551 129511716 -21271837 - MIR SINE MIR 0 262 99 1949 103 4 4 chr11 129511716 129512021 -21271532 + AluSg SINE Alu 1 305 0 647 273 62 74 chr11 129512021 129512110 -21271443 - MIR SINE MIR -163 99 10 197 380 87 16 chr11 129512113 129512297 -21271256 - L2 LINE L2 -433 2881 2685 851 188 0 0 chr11 129512305 129512465 -21271088 + FAM SINE Alu 11 170 -15 350 351 75 6 chr11 129512467 129512641 -21270912 - L2 LINE L2 -622 2692 2507 474 82 27 0 chr11 129513954 129514027 -21269526 + AluSx SINE Alu 2 76 -236 271 130 22 0 chr11 129514127 129514173 -21269380 - Alu SINE Alu -256 47 1 845 130 15 0 chr11 129514204 129514335 -21269218 + FLAM_C SINE Alu 1 133 0 1233 115 6 0 chr11 129514339 129514513 -21269040 + AluSx SINE Alu 85 259 -53 1497 165 16 33 chr11 129514595 129514758 -21268795 - AluSx SINE Alu -14 298 141 2115 76 7 7 chr11 129514758 129515035 -21268518 - AluSx SINE Alu -19 293 17 1497 165 16 33 chr11 129515035 129515174 -21268379 - AluSx SINE Alu -171 141 1 285 250 83 53 chr11 129515205 129515337 -21268216 - L1ME LINE L1 -445 5676 5541 243 256 16 66 chr11 129515415 129515536 -21268017 - L1ME LINE L1 -2379 5429 5315 308 331 38 25 chr11 129515587 129515744 -21267809 - L1ME LINE L1 -811 5335 5177 836 258 57 29 chr11 129515768 129515921 -21267632 - MIR SINE MIR -2 260 95 1908 127 0 3 chr11 129515921 129516229 -21267324 + AluSx SINE Alu 1 307 0 836 258 57 29 chr11 129516229 129516318 -21267235 - MIR SINE MIR -167 95 10 197 380 87 16 chr11 129516321 129516505 -21267048 - L2 LINE L2 -433 2881 2685 852 188 0 0 chr11 129516513 129516673 -21266880 + FAM SINE Alu 11 170 -15 350 351 75 6 chr11 129516675 129516849 -21266704 - L2 LINE L2 -622 2692 2507 806 76 0 0 chr11 129518162 129518267 -21265286 + AluSq/x SINE Alu 2 106 -206 2614 211 64 82 chr11 129518386 129518765 -21264788 + L1ME2 LINE L1 4233 4618 -1546 1578 150 45 14 chr11 129518765 129519052 -21264501 + AluJb SINE Alu 1 296 -16 2614 211 64 82 chr11 129519052 129519181 -21264372 + L1ME2 LINE L1 4618 4748 -1416 2278 68 10 0 chr11 129519181 129519475 -21264078 - AluSp SINE Alu -15 298 2 2614 211 64 82 chr11 129519475 129519712 -21263841 + L1ME2 LINE L1 4748 4988 -1176 1054 175 0 0 chr11 129519712 129519878 -21263675 + FAM SINE Alu 4 169 -6 2614 211 64 82 chr11 129519878 129520745 -21262808 + L1ME2 LINE L1 4988 5810 -354 1961 154 0 0 chr11 129520745 129521055 -21262498 + AluSx SINE Alu 1 305 -7 2614 211 64 82 chr11 129521055 129521371 -21262182 + L1ME2 LINE L1 5810 6130 -34 2052 92 62 3 chr11 129521635 129521927 -21261626 + AluSc SINE Alu 1 309 0 1905 141 3 7 chr11 129522659 129522949 -21260604 - AluJb SINE Alu -23 289 1 923 247 91 102 chr11 129523152 129523717 -21259836 + MLT1H1 LTR MaLR 1 555 0 246 375 38 34 chr11 129523980 129524244 -21259309 - L2 LINE L2 -464 2850 2586 892 143 0 8 chr11 129524349 129524482 -21259071 + FLAM_C SINE Alu 1 132 -1 476 70 0 0 chr11 129524906 129524963 -21258590 + AluSq/x SINE Alu 73 129 -183 371 338 19 80 chr11 129524965 129525076 -21258477 - L2 LINE L2 -2063 1251 1135 2177 105 0 7 chr11 129525076 129525381 -21258172 + AluSx SINE Alu 1 303 -9 371 338 19 80 chr11 129525381 129525645 -21257908 - L2 LINE L2 -2179 1135 899 1997 128 17 0 chr11 129525734 129526030 -21257523 - AluSx SINE Alu -11 301 1 958 122 0 0 chr11 129526308 129526439 -21257114 - AluJo SINE Alu -178 134 4 1440 191 69 0 chr11 129526708 129526985 -21256568 + AluJo SINE Alu 1 296 -16 2162 92 0 0 chr11 129527182 129527475 -21256078 + AluY SINE Alu 1 293 -18 285 324 148 61 chr11 129527559 129527833 -21255720 + L2 LINE L2 2402 2728 -586 2183 122 0 0 chr11 129527833 129528145 -21255408 + AluSx SINE Alu 1 312 0 285 324 148 61 chr11 129528145 129528296 -21255257 + L2 LINE L2 2728 2864 -450 6660 48 8 56 chr11 129528433 129529453 -21254100 + SVA Other Other 439 1410 0 332 250 57 0 chr11 129529519 129529607 -21253946 - L1MC4 LINE L1 -175 7867 7775 333 252 84 30 chr11 129529674 129529805 -21253748 - L1MC4 LINE L1 -274 7768 7631 293 277 250 31 chr11 129529812 129530072 -21253481 + L2 LINE L2 2997 3313 0 1606 208 65 11 chr11 129530099 129530469 -21253084 + MLT1B LTR MaLR 1 390 0 23 0 0 0 chr11 129530795 129530818 -21252735 + AT_rich Low_complexity Low_complexity 1 23 0 1742 146 17 14 chr11 129530818 129531113 -21252440 + AluSx SINE Alu 1 296 -16 2446 56 0 3 chr11 129531667 129531969 -21251584 + AluY SINE Alu 1 301 -10 2059 122 3 25 chr11 129532156 129532475 -21251078 - AluSx SINE Alu 0 312 1 1878 151 0 17 chr11 129532540 129532838 -21250715 - AluJo SINE Alu -19 293 1 761 303 19 0 chr11 129533377 129533585 -21249968 + L3 LINE CR1 1299 1510 -67 224 157 39 0 chr11 129533691 129533742 -21249811 + (CATA)n Simple_repeat Simple_repeat 2 54 0 1390 209 10 10 chr11 129533782 129534088 -21249465 + AluJo SINE Alu 1 306 -6 442 260 146 51 chr11 129534114 129534224 -21249329 - L1ME4a LINE L1 -91 6030 5932 186 43 0 0 chr11 129534224 129534247 -21249306 + (TTG)n Simple_repeat Simple_repeat 2 24 0 442 260 146 51 chr11 129534247 129534390 -21249163 - L1ME4a LINE L1 -189 5932 5753 2371 57 0 13 chr11 129534403 129534701 -21248852 + AluY SINE Alu 1 294 -17 463 193 40 107 chr11 129537587 129537737 -21245816 + MIR SINE MIR 47 186 -76 190 231 22 0 chr11 129538466 129538557 -21244996 + (CCCTG)n Simple_repeat Simple_repeat 4 96 0 200 167 0 37 chr11 129538651 129538705 -21244848 + CT-rich Low_complexity Low_complexity 1 52 0 2304 81 3 0 chr11 129539084 129539381 -21244172 + AluY SINE Alu 1 298 -13 2065 125 0 0 chr11 129539390 129539685 -21243868 + AluSx SINE Alu 1 295 -17 1354 150 48 51 chr11 129542133 129542406 -21241147 + AluJo SINE Alu 22 293 -19 484 246 141 25 chr11 129542409 129542608 -21240945 - MIR SINE MIR -5 257 36 2401 78 0 0 chr11 129542895 129543204 -21240349 + AluSc SINE Alu 1 309 0 207 246 92 0 chr11 129543318 129543383 -21240170 + L2 LINE L2 3153 3223 -49 203 155 0 86 chr11 129543634 129543692 -21239861 + GA-rich Low_complexity Low_complexity 4 56 0 506 229 147 18 chr11 129546817 129546987 -21236566 + MIR SINE MIR 63 254 -8 23 68 0 0 chr11 129547197 129547241 -21236312 + GC_rich Low_complexity Low_complexity 1 44 0 288 288 101 14 chr11 129549592 129549731 -21233822 - MIR SINE MIR -3 259 109 1166 181 98 0 chr11 129550673 129550877 -21232676 + MER58A DNA MER1_type 1 224 0 2113 151 0 0 chr11 129556430 129556742 -21226811 - AluJb SINE Alu 0 312 1 201 281 85 0 chr11 129556742 129556824 -21226729 + MIR SINE MIR 122 210 -52 396 284 39 10 chr11 129557399 129557501 -21226052 - L2 LINE L2 0 3272 3168 251 102 41 0 chr11 129557733 129557782 -21225771 + L1MD2 LINE L1 5848 5898 -461 1055 159 6 0 chr11 129557789 129557959 -21225594 + AluJb SINE Alu 135 305 -7 1451 236 82 15 chr11 129557975 129558378 -21225175 + L1MD2 LINE L1 5914 6343 -16 2303 94 0 0 chr11 129558450 129558749 -21224804 - AluSc SINE Alu -10 299 1 1090 161 55 10 chr11 129558840 129559039 -21224514 + AluJb SINE Alu 86 293 -19 2155 87 0 17 chr11 129559209 129559507 -21224046 - AluSx SINE Alu -19 293 1 886 202 155 0 chr11 129559869 129560082 -21223471 + MIR SINE MIR 17 262 0 547 308 71 25 chr11 129560165 129560487 -21223066 - HAL1 LINE L1 -1 2506 2170 2356 82 0 22 chr11 129560487 129560804 -21222749 - AluSg SINE Alu 0 310 1 1856 161 3 7 chr11 129560804 129561109 -21222444 - AluSx SINE Alu -8 304 1 387 272 104 0 chr11 129561234 129561359 -21222194 + L2 LINE L2 3176 3313 0 215 176 14 108 chr11 129561874 129561948 -21221605 + MIR SINE MIR 180 246 -16 2336 78 0 7 chr11 129562039 129562348 -21221205 - AluSc SINE Alu 0 309 3 793 231 28 57 chr11 129563196 129563292 -21220261 - MER3 DNA MER1_type -2 207 110 1664 119 0 134 chr11 129563292 129563474 -21220079 - AluSx SINE Alu -15 297 92 234 0 0 0 chr11 129563474 129563500 -21220053 + (TA)n Simple_repeat Simple_repeat 1 26 0 2381 58 0 3 chr11 129563501 129563794 -21219759 - AluY SINE Alu -19 292 1 1664 119 0 134 chr11 129563794 129563952 -21219601 - AluSx SINE Alu -219 93 1 1516 164 77 7 chr11 129563954 129564228 -21219325 - AluJo SINE Alu -19 293 1 793 231 28 57 chr11 129564228 129564340 -21219213 - MER3 DNA MER1_type -100 109 2 1942 115 37 0 chr11 129564527 129564822 -21218731 - AluSq SINE Alu -7 306 1 216 274 29 69 chr11 129565319 129565421 -21218132 - MIR3 SINE MIR -8 200 103 183 304 0 0 chr11 129567039 129567085 -21216468 - L2 LINE L2 -8 3264 3219 761 204 116 0 chr11 129567898 129568045 -21215508 + FRAM SINE Alu 1 164 -2 1669 153 50 4 chr11 129568346 129568627 -21214926 - AluJo SINE Alu -8 304 11 2233 104 0 0 chr11 129570742 129571040 -21212513 - AluSx SINE Alu -14 298 1 330 266 108 55 chr11 129571692 129571899 -21211654 - L2 LINE L2 -16 3256 3026 2333 114 0 0 chr11 129573149 129573455 -21210098 - AluSx SINE Alu -6 306 1 2222 107 7 26 chr11 129574229 129574537 -21209016 - AluSx SINE Alu -10 302 1 276 133 0 0 chr11 129574605 129574650 -21208903 - Alu SINE Alu -20 281 237 2304 93 0 0 chr11 129575551 129575840 -21207713 - AluSg SINE Alu -19 291 3 2518 61 0 23 chr11 129576711 129577021 -21206532 - AluY SINE Alu -8 303 1 1128 221 22 0 chr11 129577070 129577296 -21206257 - MIR SINE MIR -21 241 11 21 57 0 0 chr11 129580233 129580268 -21203285 + GC_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr11 129580661 129580697 -21202856 + GC_rich Low_complexity Low_complexity 1 36 0 254 255 0 73 chr11 129580857 129581049 -21202504 + G-rich Low_complexity Low_complexity 1 178 0 325 276 121 43 chr11 129582573 129582689 -21200864 + L2 LINE L2 3148 3272 0 566 176 0 20 chr11 129582926 129583028 -21200525 + MER2 DNA MER2_type 2 101 -244 1097 120 68 0 chr11 129583085 129583277 -21200276 + MER2 DNA MER2_type 83 287 -58 2512 58 0 3 chr11 129583302 129583596 -21199957 - AluY SINE Alu -18 293 1 1587 106 4 35 chr11 129583596 129583822 -21199731 - AluSg/x SINE Alu -9 303 85 541 158 45 45 chr11 129583846 129583979 -21199574 - L1MA5 LINE L1 0 6300 6168 270 170 43 0 chr11 129583979 129584026 -21199527 + MER2 DNA MER2_type 278 326 -19 2059 137 0 0 chr11 129584069 129584361 -21199192 - AluSx SINE Alu -20 292 1 2251 112 3 0 chr11 129584368 129584672 -21198881 - AluY SINE Alu -6 305 1 641 211 21 7 chr11 129584734 129584876 -21198677 - MIR SINE MIR -54 208 65 831 202 136 35 chr11 129584909 129585107 -21198446 - MIR SINE MIR 0 262 45 1834 182 0 3 chr11 129585181 129585477 -21198076 - AluJo SINE Alu -13 299 5 282 138 0 3 chr11 129585715 129585789 -21197764 + Alu SINE Alu 247 311 0 1617 162 24 21 chr11 129586239 129586529 -21197024 + AluJb SINE Alu 15 305 -7 879 319 65 87 chr11 129588042 129588172 -21195381 - L3 LINE CR1 -67 1510 1379 1880 129 6 75 chr11 129588172 129588506 -21195047 + AluJb SINE Alu 1 311 -1 2287 108 7 0 chr11 129588507 129588804 -21194749 + AluSx SINE Alu 1 299 -13 879 319 65 87 chr11 129588804 129588861 -21194692 - L3 LINE CR1 -198 1379 1322 1566 107 65 0 chr11 129588861 129588998 -21194555 + AluSq SINE Alu 1 158 -155 2107 118 6 29 chr11 129588998 129589312 -21194241 + AluSx SINE Alu 1 307 -5 1566 107 65 0 chr11 129589312 129589390 -21194163 + AluSq SINE Alu 158 230 -83 879 319 65 87 chr11 129589390 129589401 -21194152 - L3 LINE CR1 -255 1322 1312 2395 101 0 0 chr11 129589401 129589697 -21193856 + AluSc SINE Alu 1 296 -13 879 319 65 87 chr11 129589697 129590217 -21193336 - L3 LINE CR1 -265 1312 804 2237 112 0 3 chr11 129590672 129590967 -21192586 + AluSx SINE Alu 1 294 -18 2165 106 3 0 chr11 129591230 129591547 -21192006 - AluSx SINE Alu 0 318 1 691 178 16 16 chr11 129591822 129591951 -21191602 - AluJo SINE Alu -178 134 6 1788 181 3 0 chr11 129592095 129592382 -21191171 - AluJb SINE Alu -24 288 1 1911 139 0 21 chr11 129592754 129593064 -21190489 - AluSc SINE Alu 0 304 1 878 113 0 57 chr11 129593081 129593222 -21190331 - AluSq/x SINE Alu -179 133 1 1625 164 77 7 chr11 129593224 129593498 -21190055 - AluJo SINE Alu -19 293 1 487 279 0 0 chr11 129593499 129593610 -21189943 - MER3 DNA MER1_type -97 112 2 189 0 0 0 chr11 129593797 129593818 -21189735 + (T)n Simple_repeat Simple_repeat 1 21 0 2246 117 0 3 chr11 129594327 129594626 -21188927 + AluSx SINE Alu 1 298 -14 1775 151 50 4 chr11 129596741 129597020 -21186533 + AluJo SINE Alu 11 302 -10 760 204 116 0 chr11 129597323 129597470 -21186083 - FRAM SINE Alu -2 164 1 192 286 0 0 chr11 129598283 129598325 -21185228 + L2 LINE L2 3219 3260 -12 230 274 29 69 chr11 129599946 129600048 -21183505 + MIR3 SINE MIR 103 200 -8 1891 140 7 10 chr11 129600545 129600845 -21182708 + AluSx SINE Alu 1 299 -13 402 186 29 0 chr11 129600852 129600954 -21182599 - L1MEc LINE L1 -4081 2640 2536 2388 103 0 3 chr11 129601165 129601475 -21182078 - AluSq SINE Alu -4 309 1 384 239 30 30 chr11 129601484 129601506 -21182047 - L1MA10 LINE L1 0 6334 6313 1011 242 108 6 chr11 129601506 129601866 -21181687 - L1ME1 LINE L1 -9 6157 5761 706 225 51 68 chr11 129601893 129602110 -21181443 - L1MEc LINE L1 -4726 1814 1606 2078 152 0 10 chr11 129602110 129602420 -21181133 - AluJb SINE Alu -5 307 1 706 225 51 68 chr11 129602420 129602597 -21180956 - L1MEc LINE L1 -4934 1606 1427 848 161 0 0 chr11 129602604 129602734 -21180819 - AluSg/x SINE Alu 0 312 183 446 224 24 0 chr11 129602796 129602881 -21180672 - FLAM_A SINE Alu -37 105 19 2390 221 88 32 chr11 129602881 129603190 -21180363 - L1ME1 LINE L1 -869 5277 4987 1831 148 0 55 chr11 129603190 129603500 -21180053 + AluJb SINE Alu 1 293 -19 2390 221 88 32 chr11 129603500 129603614 -21179939 - L1ME1 LINE L1 -1159 4987 4881 2856 179 80 27 chr11 129603614 129604288 -21179265 - MER67C LTR ERV1 0 710 1 2390 221 88 32 chr11 129604288 129604602 -21178951 - L1ME1 LINE L1 -1265 4881 4498 1062 159 96 40 chr11 129604631 129604882 -21178671 - LTR48B LTR ERV1 0 644 380 798 168 7 14 chr11 129604884 129605027 -21178526 + FLAM_C SINE Alu 2 143 0 496 160 123 144 chr11 129605027 129605124 -21178429 - LTR48 LTR ERV1 -256 531 438 1990 148 0 3 chr11 129605124 129605414 -21178139 - AluJb SINE Alu -14 298 10 496 160 123 144 chr11 129605414 129605497 -21178056 - LTR48 LTR ERV1 -349 438 355 383 192 14 0 chr11 129605497 129605570 -21177983 + Tigger5 DNA MER2_type 1 74 -2249 362 208 0 0 chr11 129605575 129605647 -21177906 - Tigger5 DNA MER2_type -4 2319 2248 333 182 0 0 chr11 129605659 129605714 -21177839 + Tigger5 DNA MER2_type 2268 2322 -1 1164 193 73 56 chr11 129605718 129605998 -21177555 - LTR48 LTR ERV1 -439 348 74 1655 166 3 60 chr11 129605998 129606185 -21177368 - AluJb SINE Alu 0 312 151 2057 124 0 50 chr11 129606185 129606508 -21177045 - AluSx SINE Alu -5 307 1 1655 166 3 60 chr11 129606508 129606651 -21176902 - AluJb SINE Alu -161 151 1 1988 157 0 10 chr11 129606655 129606960 -21176593 - AluSx SINE Alu -10 302 1 1164 193 73 56 chr11 129606960 129607016 -21176537 - LTR48 LTR ERV1 -715 72 1 1034 265 39 6 chr11 129607032 129607368 -21176185 - L1MEc LINE L1 -6028 693 347 1581 176 29 4 chr11 129607571 129607844 -21175709 - AluJo SINE Alu -2 310 31 915 171 40 7 chr11 129607844 129607996 -21175557 + AluJo/FRAM SINE Alu 135 291 -21 1988 95 0 4 chr11 129608097 129608370 -21175183 + L1PA8 LINE L1 5893 6164 -8 21 0 0 0 chr11 129608370 129608391 -21175162 + AT_rich Low_complexity Low_complexity 1 21 0 1817 166 95 20 chr11 129608593 129609099 -21174454 - Charlie1 DNA MER1_type -1 2760 2217 207 0 0 0 chr11 129609121 129609144 -21174409 + (TTA)n Simple_repeat Simple_repeat 2 24 0 304 219 98 90 chr11 129609239 129609312 -21174241 - MER34 LTR ERV1 0 542 471 3858 129 8 45 chr11 129609312 129609938 -21173615 - LTR26 LTR ERV1 0 603 1 304 219 98 90 chr11 129609938 129610088 -21173465 - MER34 LTR ERV1 -71 471 364 2341 101 0 19 chr11 129610118 129610434 -21173119 - AluSq SINE Alu -3 310 1 1950 145 16 30 chr11 129610441 129610745 -21172808 - AluSq SINE Alu -13 300 1 1761 245 57 10 chr11 129610748 129611340 -21172213 + L1 LINE L1 2703 3322 -2824 189 0 0 0 chr11 129611476 129611497 -21172056 + (A)n Simple_repeat Simple_repeat 1 21 0 715 145 8 0 chr11 129612268 129612385 -21171168 + MER65B LTR ERV1 1 118 -413 251 175 0 0 chr11 129612385 129612425 -21171128 + Alu SINE Alu 1 40 -259 2232 103 0 29 chr11 129612425 129612736 -21170817 + AluSx SINE Alu 2 303 -9 2278 105 3 3 chr11 129612746 129613051 -21170502 + AluSp SINE Alu 1 305 -8 445 161 46 0 chr11 129613070 129613157 -21170396 + MER65A LTR ERV1 354 444 -1 2330 104 0 0 chr11 129613271 129613568 -21169985 + AluSq SINE Alu 1 297 -16 2113 119 0 3 chr11 129613571 129613883 -21169670 + AluSx SINE Alu 1 311 0 1288 79 0 0 chr11 129614085 129614237 -21169316 - AluSq/x SINE Alu -161 152 1 2161 117 21 0 chr11 129614499 129614789 -21168764 - AluSx SINE Alu -12 300 5 5242 144 19 26 chr11 129614980 129615758 -21167795 + L1MA6 LINE L1 5276 6058 -242 1980 103 6 115 chr11 129615758 129615893 -21167660 + AluSp SINE Alu 1 149 -154 2276 111 7 3 chr11 129615893 129616200 -21167353 + AluSx SINE Alu 1 308 -4 1980 103 6 115 chr11 129616200 129616404 -21167149 + AluSp SINE Alu 149 303 0 5242 144 19 26 chr11 129616404 129616544 -21167009 + L1MA6 LINE L1 6058 6189 -111 2275 96 3 7 chr11 129616544 129616845 -21166708 + AluSc SINE Alu 1 300 -9 5242 144 19 26 chr11 129616845 129616952 -21166601 + L1MA6 LINE L1 6189 6295 -5 1634 194 10 13 chr11 129616960 129617264 -21166289 + AluJo SINE Alu 1 303 -9 942 243 127 4 chr11 129617403 129617662 -21165891 + L2 LINE L2 3023 3313 0 1083 120 0 0 chr11 129617857 129618007 -21165546 - AluSg/x SINE Alu -15 294 145 475 87 0 0 chr11 129668008 129668077 -21115476 + Alu SINE Alu 238 306 -5 21 0 0 0 chr11 129669899 129669920 -21113633 + AT_rich Low_complexity Low_complexity 1 21 0 798 293 120 36 chr11 129669920 129670279 -21113274 - L3 LINE CR1 -11 1566 1178 182 328 117 16 chr11 129672140 129672268 -21111285 - L2 LINE L2 -42 3271 3131 616 234 78 0 chr11 129672654 129672795 -21110758 + MIR3 SINE MIR 57 208 0 29 60 0 0 chr11 129673954 129674004 -21109549 + GC_rich Low_complexity Low_complexity 1 50 0 212 296 111 15 chr11 129679177 129679312 -21104241 + L2 LINE L2 2531 2678 -636 231 167 0 0 chr11 129679451 129679487 -21104066 - MLT1J LTR MaLR 0 511 476 342 232 0 91 chr11 129679488 129679587 -21103966 - L1MC4 LINE L1 -1339 6703 6614 361 188 0 0 chr11 129679598 129679662 -21103891 - MLT1J LTR MaLR -321 190 127 1657 211 43 11 chr11 129679691 129680091 -21103462 - MLT1J LTR MaLR -52 459 1 227 253 172 30 chr11 129680242 129680341 -21103212 + L2 LINE L2 3201 3313 0 * 300 327 91 0 chr11 129680338 129680448 -21103105 - MIR3 SINE MIR -52 156 37 511 365 49 18 chr11 129680536 129680862 -21102691 - L2 LINE L2 -650 2664 2329 483 282 23 35 chr11 129681131 129681305 -21102248 - L2 LINE L2 -1004 2310 2139 1894 153 0 7 chr11 129681314 129681621 -21101932 + AluSx SINE Alu 1 305 -7 448 304 148 25 chr11 129681668 129681905 -21101648 + MLT1J2 LTR MaLR 67 332 -118 991 219 137 121 chr11 129681966 129682251 -21101302 - MLT1J LTR MaLR 0 511 232 2327 83 3 0 chr11 129682251 129682552 -21101001 - AluSp SINE Alu -11 302 1 991 219 137 121 chr11 129682552 129682692 -21100861 - MLT1J LTR MaLR -279 232 74 3606 141 20 36 chr11 129682692 129683351 -21100202 + L1MB8 LINE L1 5525 6172 -6 991 219 137 121 chr11 129683351 129683427 -21100126 - MLT1J LTR MaLR -437 74 1 1960 113 38 0 chr11 129683529 129683822 -21099731 - AluSx SINE Alu -8 304 1 3485 171 39 38 chr11 129683853 129684246 -21099307 + L1MB3 LINE L1 5444 5840 -343 2183 128 0 0 chr11 129684246 129684558 -21098995 + AluSx SINE Alu 1 312 0 3485 171 39 38 chr11 129684558 129684902 -21098651 + L1MB3 LINE L1 5840 6182 -1 284 245 236 9 chr11 129685062 129685168 -21098385 + MLT2E LTR ERVL 43 172 -456 333 263 0 53 chr11 129685325 129685439 -21098114 + LTR33A LTR ERVL 416 523 0 1665 231 73 80 chr11 129685564 129686275 -21097278 - L1MC4 LINE L1 -151 7891 7185 1605 120 3 86 chr11 129686275 129686567 -21096986 + AluJb SINE Alu 1 268 -44 1665 231 73 80 chr11 129686567 129686651 -21096902 - L1MC4 LINE L1 -857 7185 7102 1948 99 10 45 chr11 129687068 129687382 -21096171 - AluSx SINE Alu -7 305 3 1568 123 3 110 chr11 129687683 129688036 -21095517 - AluJb SINE Alu 0 319 1 376 215 154 13 chr11 129688075 129688224 -21095329 + L1MEd LINE L1 1148 1317 -5055 457 54 0 0 chr11 129688230 129688286 -21095267 + Alu SINE Alu 3 58 -260 2144 116 0 0 chr11 129688291 129688593 -21094960 + AluSx SINE Alu 1 302 -10 570 274 98 41 chr11 129688593 129689073 -21094480 + L1MEd LINE L1 1207 1731 -4653 250 143 0 0 chr11 129689219 129689261 -21094292 - MER116 DNA Mariner -38 42 1 1566 139 36 18 chr11 129689298 129689605 -21093948 - AluJo SINE Alu 0 312 1 352 244 23 35 chr11 129689607 129689693 -21093860 + L2 LINE L2 3224 3308 -5 1461 272 135 44 chr11 129689960 129690497 -21093056 + HAL1 LINE L1 1 611 -1896 1857 146 14 0 chr11 129690497 129690784 -21092769 + AluJo SINE Alu 1 291 -21 1461 272 135 44 chr11 129690784 129690907 -21092646 + HAL1 LINE L1 611 721 -1786 280 282 77 28 chr11 129690980 129691015 -21092538 - L1MD3 LINE L1 -399 7596 7564 1898 138 7 3 chr11 129691015 129691319 -21092234 - AluJo SINE Alu -7 305 1 280 282 77 28 chr11 129691319 129691668 -21091885 - L1MD3 LINE L1 -431 7564 7098 1976 107 22 0 chr11 129691715 129692017 -21091536 + AluSx SINE Alu 4 311 0 754 198 0 0 chr11 129692128 129692254 -21091299 - FLAM_C SINE Alu -17 126 1 730 217 71 62 chr11 129692463 129692568 -21090985 + MIR SINE MIR 21 124 -138 1757 167 3 22 chr11 129692568 129692886 -21090667 - AluJb SINE Alu 0 312 1 730 217 71 62 chr11 129692886 129693020 -21090533 + MIR SINE MIR 124 262 0 421 273 64 91 chr11 129693024 129693283 -21090270 + L1MEd LINE L1 2424 2668 -3714 2065 127 0 16 chr11 129693283 129693597 -21089956 + AluSg SINE Alu 1 309 -1 421 273 64 91 chr11 129693597 129693776 -21089777 + L1MEd LINE L1 2668 2850 -3532 380 276 163 25 chr11 129694381 129694584 -21088969 - MIR SINE MIR -10 252 22 1798 142 9 49 chr11 129695493 129695818 -21087735 - AluSx SINE Alu 0 312 1 262 224 94 12 chr11 129695818 129695903 -21087650 - L1ME LINE L1 -383 5738 5647 2003 106 10 7 chr11 129695904 129696222 -21087331 - AluSx SINE Alu 0 312 1 2184 231 88 39 chr11 129696396 129696500 -21087053 + HAL1 LINE L1 1 98 -2409 1974 126 16 10 chr11 129696500 129696809 -21086744 + AluJb SINE Alu 1 311 -1 2184 231 88 39 chr11 129696809 129696991 -21086562 + HAL1 LINE L1 98 270 -2237 825 237 5 11 chr11 129696991 129697181 -21086372 - MER91B DNA MER1_type -1 189 1 2184 231 88 39 chr11 129697181 129697644 -21085909 + HAL1 LINE L1 270 709 -1798 2350 70 7 0 chr11 129697644 129697943 -21085610 - AluY SINE Alu -10 301 1 2184 231 88 39 chr11 129697943 129698309 -21085244 + HAL1 LINE L1 709 1205 -1302 374 23 0 0 chr11 129698312 129698355 -21085198 + AluY SINE Alu 2 44 -256 358 273 45 61 chr11 129698363 129698561 -21084992 - L1MC5 LINE L1 -248 7713 7519 644 52 10 73 chr11 129698570 129698762 -21084791 + (TA)n Simple_repeat Simple_repeat 1 180 0 804 161 24 0 chr11 129699678 129699802 -21083751 - AluSq/x SINE Alu -186 127 1 193 340 69 28 chr11 129701245 129701389 -21082164 - MIR SINE MIR -55 207 58 194 194 194 65 chr11 129703432 129703556 -21079997 - MIR3 SINE MIR -65 143 4 1690 226 51 51 chr11 129704192 129704244 -21079309 - L1MC2 LINE L1 -9 6335 6284 2152 91 0 7 chr11 129704244 129704585 -21078968 + AluSq SINE Alu 1 339 0 1690 226 51 51 chr11 129704585 129705119 -21078434 - L1MC2 LINE L1 -59 6285 5748 1585 271 67 13 chr11 129705119 129705824 -21077729 - L1M4 LINE L1 -2590 3556 2814 425 341 34 10 chr11 129706869 129707074 -21076479 + L1M4 LINE L1 3751 3960 -2186 822 274 104 20 chr11 129707181 129707633 -21075920 - L1MB7 LINE L1 -9 6175 5686 1720 150 0 0 chr11 129707686 129707946 -21075607 - AluSx SINE Alu -52 260 1 3124 211 44 53 chr11 129708932 129709898 -21073655 - L1MB4 LINE L1 0 6180 5217 1046 48 34 3 chr11 129810486 129810649 -20972904 - L1PA2 LINE L1 -246 5909 5746 228 35 0 0 chr11 129810628 129810657 -20972896 + L1P LINE L1 5308 5336 -795 * 202 315 65 28 chr11 129810864 129810972 -20972581 + MIR3 SINE MIR 83 194 -14 256 264 153 16 chr11 129814122 129814264 -20969289 + MIR3 SINE MIR 3 160 -65 216 310 0 0 chr11 129815200 129815258 -20968295 + (CA)n Simple_repeat Simple_repeat 1 58 0 555 269 83 0 chr11 129815438 129815631 -20967922 - L2 LINE L2 -685 2629 2421 206 339 97 38 chr11 129815623 129815809 -20967744 + MIR SINE MIR 11 207 -55 * 3368 140 47 28 chr11 129816681 129817296 -20966257 + L1MB8 LINE L1 5542 6168 -10 450 0 0 0 chr11 129817304 129817354 -20966199 + (CA)n Simple_repeat Simple_repeat 2 51 0 631 182 27 0 chr11 129817373 129817483 -20966070 + MER81 DNA DNA 1 113 -1 564 359 92 18 chr11 129817484 129817932 -20965621 - L3 LINE CR1 -209 1368 888 2252 77 3 7 chr11 129818025 129818324 -20965229 + AluSg SINE Alu 1 298 -12 518 343 86 28 chr11 129818324 129818648 -20964905 - L2 LINE L2 -21 3251 2909 198 71 0 0 chr11 129818759 129818787 -20964766 + (TAA)n Simple_repeat Simple_repeat 2 29 0 645 295 65 0 chr11 129818792 129819009 -20964544 - MIR SINE MIR -12 250 20 371 280 16 33 chr11 129819911 129820093 -20963460 + CT-rich Low_complexity Low_complexity 1 179 0 344 22 22 0 chr11 129820185 129820230 -20963323 + (CA)n Simple_repeat Simple_repeat 2 47 0 278 250 43 43 chr11 129821277 129821393 -20962160 - MIR3 SINE MIR -80 128 13 293 331 62 45 chr11 129821530 129821708 -20961845 + L2 LINE L2 3092 3272 0 397 216 188 44 chr11 129822694 129822875 -20960678 + MIR SINE MIR 56 262 0 460 385 61 4 chr11 129823276 129823523 -20960030 + L3 LINE CR1 1311 1571 -6 190 333 56 0 chr11 129823672 129823762 -20959791 + MIR3 SINE MIR 114 208 0 198 103 0 0 chr11 129823949 129823978 -20959575 + (CA)n Simple_repeat Simple_repeat 2 30 0 867 231 63 13 chr11 129824638 129824876 -20958677 - MIR SINE MIR -11 251 2 216 0 0 0 chr11 129824984 129825008 -20958545 + (T)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr11 129825141 129825162 -20958391 + (T)n Simple_repeat Simple_repeat 1 21 0 242 338 12 0 chr11 129825162 129825242 -20958311 + MIR SINE MIR 100 180 -82 1370 182 34 48 chr11 129825811 129826102 -20957451 - AluJo SINE Alu -15 297 11 457 272 109 20 chr11 129826874 129827021 -20956532 + MIR3 SINE MIR 10 169 -39 197 189 0 0 chr11 129828072 129828109 -20955444 + MIR3 SINE MIR 118 154 -54 227 184 20 0 chr11 129829250 129829299 -20954254 - MIR SINE MIR -68 140 91 437 284 52 6 chr11 129829954 129830124 -20953429 - MER20B DNA MER1_type -17 202 22 224 241 17 0 chr11 129830273 129830331 -20953222 + MIR SINE MIR 91 149 -59 626 270 11 0 chr11 129830735 129830909 -20952644 + MER5B DNA MER1_type 1 176 -2 594 261 49 45 chr11 129832046 129832275 -20951278 - MIR SINE MIR 0 262 41 2251 123 3 3 chr11 129832309 129832619 -20950934 + AluSx SINE Alu 1 310 -2 198 329 51 0 chr11 129833762 129833841 -20949712 - L2 LINE L2 0 3272 3190 269 260 26 0 chr11 129833924 129834001 -20949552 - MIR SINE MIR -118 144 66 227 423 47 0 chr11 129834004 129834153 -20949400 - MIR SINE MIR -57 205 50 216 214 0 0 chr11 129834600 129834642 -20948911 - MIR SINE MIR -155 107 66 875 253 30 13 chr11 129834845 129835078 -20948475 - MIR SINE MIR -6 256 20 220 246 0 53 chr11 129835418 129835475 -20948078 + G-rich Low_complexity Low_complexity 5 58 0 1117 226 103 50 chr11 129837404 129837781 -20945772 + L3 LINE CR1 1180 1576 -1 192 77 0 0 chr11 129837913 129837939 -20945614 + (GA)n Simple_repeat Simple_repeat 1 26 0 426 69 0 0 chr11 129838219 129838277 -20945276 + (TG)n Simple_repeat Simple_repeat 2 59 0 559 260 82 36 chr11 129838735 129838931 -20944622 + MIR SINE MIR 52 256 -6 683 223 191 39 chr11 129839114 129839396 -20944157 - L1ME3A LINE L1 0 6170 5846 475 226 90 3 chr11 129839390 129839526 -20944027 + L1ME3A LINE L1 5698 5844 -334 * 310 237 148 37 chr11 129839725 129839860 -20943693 + L3 LINE CR1 1419 1568 -9 332 303 46 0 chr11 129840720 129840829 -20942724 - MIR SINE MIR -70 192 79 286 320 0 95 chr11 129841234 129841381 -20942172 + MIR SINE MIR 59 191 -71 374 205 0 24 chr11 129841471 129841554 -20941999 + MER5B DNA MER1_type 17 97 -81 194 290 60 30 chr11 129841662 129841762 -20941791 - L2 LINE L2 -45 3227 3125 504 226 14 55 chr11 129842919 129843065 -20940488 - MIR3 SINE MIR -34 174 35 293 286 48 36 chr11 129843804 129843888 -20939665 - L2 LINE L2 -20 3293 3209 276 102 0 0 chr11 129843903 129843952 -20939601 + (TG)n Simple_repeat Simple_repeat 2 50 0 319 274 17 43 chr11 129844378 129844495 -20939058 - L2 LINE L2 -1 3312 3199 638 298 12 1 chr11 129844876 129845060 -20938493 + L1ME LINE L1 5494 5680 -494 272 266 97 26 chr11 129845125 129845238 -20938315 + L1ME LINE L1 5704 5824 -297 386 238 62 79 chr11 129846105 129846332 -20937221 + L1ME LINE L1 5173 5390 -774 1816 193 3 0 chr11 129846332 129846643 -20936910 + AluJo SINE Alu 1 312 0 386 238 62 79 chr11 129846643 129846686 -20936867 + L1ME LINE L1 5390 5432 -732 1269 191 49 113 chr11 129847417 129847887 -20935666 - Charlie4a DNA MER1_type -67 441 2 350 284 49 0 chr11 129848432 129848534 -20935019 - L2 LINE L2 -1 3312 3206 512 326 11 27 chr11 129848963 129849150 -20934403 - MER91A DNA MER1_type -3 193 10 606 214 0 23 chr11 129850723 129850854 -20932699 + MER33 DNA MER1_type 18 145 -179 225 0 0 0 chr11 129850854 129850879 -20932674 + (T)n Simple_repeat Simple_repeat 1 25 0 540 221 62 58 chr11 129851027 129851094 -20932459 + MER33 DNA MER1_type 123 188 -2436 2307 114 0 3 chr11 129851094 129851391 -20932162 - AluSq SINE Alu -17 296 1 540 221 62 58 chr11 129851391 129851563 -20931990 + MER33 DNA MER1_type 188 363 0 289 282 27 0 chr11 129851564 129851665 -20931888 - MIR SINE MIR -40 168 64 275 284 0 0 chr11 129851816 129851883 -20931670 + L3 LINE CR1 1067 1133 -444 225 330 53 0 chr11 129851986 129852080 -20931473 + L3 LINE CR1 1369 1467 -110 212 100 25 0 chr11 129852691 129852731 -20930822 + (CA)n Simple_repeat Simple_repeat 2 42 0 325 186 244 0 chr11 129852964 129853050 -20930503 - MIR SINE MIR -14 248 142 230 224 26 40 chr11 129853177 129853253 -20930300 - MIR SINE MIR -79 183 109 181 214 0 107 chr11 129853799 129853883 -20929670 - L2 LINE L2 -5 3267 3193 430 235 35 43 chr11 129854799 129854914 -20928639 - MIR SINE MIR -111 151 38 799 159 100 43 chr11 129855406 129855630 -20927923 - MIR SINE MIR -1 261 27 1931 123 23 45 chr11 129855649 129855958 -20927595 + AluSx SINE Alu 1 302 -10 375 266 32 45 chr11 129856154 129856308 -20927245 - MER5B DNA MER1_type -4 174 23 2306 98 3 0 chr11 129857481 129857776 -20925777 - AluSc SINE Alu -13 296 1 2096 152 0 0 chr11 129857787 129858090 -20925463 - AluJb SINE Alu -9 303 1 495 172 20 73 chr11 129858133 129858284 -20925269 - MIR SINE MIR 0 262 120 636 157 30 15 chr11 129858382 129858516 -20925037 - MER58B DNA MER1_type -20 321 186 1624 189 55 64 chr11 129858744 129859215 -20924338 + MLT1C LTR MaLR 1 467 0 710 293 169 4 chr11 129862399 129862672 -20920881 - MER115 DNA AcHobo -287 406 89 417 269 62 62 chr11 129863503 129863696 -20919857 - MIR3 SINE MIR -6 202 10 287 345 94 57 chr11 129864168 129864581 -20918972 + L2 LINE L2 2839 3272 -41 559 309 48 8 chr11 129864581 129864830 -20918723 - MIR SINE MIR -2 260 2 287 345 94 57 chr11 129864830 129864871 -20918682 + L2 LINE L2 3272 3310 -3 508 267 38 6 chr11 129867438 129867617 -20915936 - MIR SINE MIR -70 138 1 374 312 87 23 chr11 129869363 129869536 -20914017 + MIR3 SINE MIR 24 207 -1 384 275 152 18 chr11 129870465 129870636 -20912917 - MIR SINE MIR -41 221 28 234 0 0 0 chr11 129870712 129870738 -20912815 + (T)n Simple_repeat Simple_repeat 1 26 0 1915 125 45 14 chr11 129870886 129871055 -20912498 - AluSx SINE Alu -14 298 115 246 95 0 0 chr11 129871055 129871097 -20912456 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 1915 125 45 14 chr11 129871097 129871216 -20912337 - AluSx SINE Alu -197 115 1 781 276 89 27 chr11 129871220 129871808 -20911745 + L1ME4a LINE L1 5465 6120 -1 320 242 30 10 chr11 129872550 129872649 -20910904 + LTR33 LTR ERVL 421 521 0 216 289 56 11 chr11 129873074 129873164 -20910389 + L2 LINE L2 3138 3231 -41 432 327 91 44 chr11 129873446 129873810 -20909743 + L3 LINE CR1 1130 1510 -67 300 204 42 148 chr11 129874217 129874359 -20909194 - MIR SINE MIR -123 139 13 1018 129 0 0 chr11 129874920 129875060 -20908493 + FRAM SINE Alu 1 139 -37 223 329 0 25 chr11 129875885 129875964 -20907589 - L2 LINE L2 -8 3264 3188 330 341 95 7 chr11 129876015 129876235 -20907318 + MIR SINE MIR 3 249 -13 779 229 130 17 chr11 129876509 129876740 -20906813 - MIR SINE MIR 0 262 6 1721 179 18 3 chr11 129877005 129877290 -20906263 - AluJb SINE Alu -23 289 1 1935 158 0 0 chr11 129877455 129877740 -20905813 + AluSx SINE Alu 10 294 -18 563 263 40 72 chr11 129879938 129880189 -20903364 - MIR SINE MIR -6 256 14 198 243 157 29 chr11 129881675 129881745 -20901808 + MIR SINE MIR 25 103 -105 2145 129 0 23 chr11 129882371 129882680 -20900873 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr11 129883082 129883104 -20900449 + AT_rich Low_complexity Low_complexity 1 22 0 620 231 206 18 chr11 129884573 129884855 -20898698 + L1ME4a LINE L1 5785 6119 -2 270 0 0 0 chr11 129885038 129885068 -20898485 + (TG)n Simple_repeat Simple_repeat 2 31 0 338 323 32 39 chr11 129885684 129885839 -20897714 + MER20B DNA MER1_type 7 160 -623 2359 97 0 7 chr11 129886112 129886420 -20897133 + AluY SINE Alu 1 306 -5 413 294 133 19 chr11 129887041 129887252 -20896301 - MIR SINE MIR -15 247 13 695 311 13 13 chr11 129887278 129887513 -20896040 + MIR SINE MIR 22 256 -6 200 200 0 0 chr11 129887703 129887738 -20895815 + (CA)n Simple_repeat Simple_repeat 2 36 0 292 329 66 24 chr11 129889025 129889314 -20894239 - L1MC5 LINE L1 -25 7936 7636 283 254 30 0 chr11 129889671 129889738 -20893815 - MER113 DNA MER1_type? 0 521 453 988 185 13 0 chr11 129889772 129889923 -20893630 + AluJb SINE Alu 136 288 -24 250 315 114 2 chr11 129890154 129890274 -20893279 + MIR SINE MIR 19 148 -62 233 276 17 0 chr11 129891236 129891294 -20892259 + GA-rich Low_complexity Low_complexity 4 62 0 521 270 153 19 chr11 129891892 129892107 -20891446 + MIR SINE MIR 14 257 -5 401 311 6 37 chr11 129892737 129892901 -20890652 + MIR SINE MIR 40 198 -64 509 191 75 15 chr11 129893906 129894059 -20889494 + MIR3 SINE MIR 21 178 -30 231 274 75 9 chr11 129894111 129894217 -20889336 - L2 LINE L2 -11 3261 3149 2196 118 7 0 chr11 129894586 129894891 -20888662 + AluSc SINE Alu 1 307 -2 503 289 13 27 chr11 129895159 129895308 -20888245 - MIR SINE MIR -1 261 115 247 293 75 38 chr11 129896299 129896432 -20887121 - MIR3 SINE MIR -10 198 61 418 281 7 46 chr11 129897022 129897112 -20886441 + MIR SINE MIR 70 153 -109 351 0 0 0 chr11 129897112 129897151 -20886402 + (TAA)n Simple_repeat Simple_repeat 3 41 0 418 281 7 46 chr11 129897151 129897213 -20886340 + MIR SINE MIR 153 216 -46 21 0 0 0 chr11 129897603 129897624 -20885929 + AT_rich Low_complexity Low_complexity 1 21 0 697 264 40 0 chr11 129898320 129898494 -20885059 + MIR SINE MIR 24 204 -58 1177 211 81 3 chr11 129898544 129898829 -20884724 + L1ME1 LINE L1 5855 6161 -5 183 192 96 55 chr11 129899014 129899087 -20884466 + MIR3 SINE MIR 116 191 -17 237 256 113 42 chr11 129899300 129899468 -20884085 - MIR SINE MIR -2 260 81 526 290 16 21 chr11 129899553 129899739 -20883814 - MIR SINE MIR -3 259 75 1710 299 86 40 chr11 129900329 129901446 -20882107 - L2 LINE L2 0 3313 2250 1687 203 3 0 chr11 129901446 129901756 -20881797 - AluJo SINE Alu -1 311 1 1710 299 86 40 chr11 129901756 129901879 -20881674 - L2 LINE L2 -1063 2250 2134 2367 119 0 0 chr11 129901879 129902191 -20881362 - AluSq SINE Alu -1 312 1 1710 299 86 40 chr11 129902191 129902262 -20881291 - L2 LINE L2 -1179 2134 1942 2267 93 7 0 chr11 129902277 129902566 -20880987 + AluSx SINE Alu 1 291 -21 1085 102 0 6 chr11 129902566 129902733 -20880820 + (GGAA)n Simple_repeat Simple_repeat 3 168 0 264 357 82 12 chr11 129902749 129902920 -20880633 - MER5A DNA MER1_type -3 186 4 198 204 0 0 chr11 129903490 129903534 -20880019 - L2 LINE L2 -19 3294 3251 1015 177 20 30 chr11 129904231 129904429 -20879124 - AluJb SINE Alu 0 312 117 386 312 89 13 chr11 129904536 129904693 -20878860 + MER5B DNA MER1_type 8 176 -2 194 298 61 53 chr11 129904704 129904818 -20878735 - L3 LINE CR1 -333 1244 1130 2336 115 0 0 chr11 129904884 129905188 -20878365 - AluSq SINE Alu -8 305 2 260 310 10 30 chr11 129907002 129907102 -20876451 + MIR SINE MIR 114 211 -51 4058 74 17 0 chr11 129907861 129908404 -20875149 - MER41A LTR ERV1 0 554 3 284 294 7 75 chr11 129908616 129908790 -20874763 + MIR SINE MIR 18 181 -63 579 279 32 23 chr11 129909501 129909720 -20873833 - L2 LINE L2 -6 3307 3087 235 238 0 16 chr11 129910109 129910172 -20873381 - MLT1J2 LTR MaLR -42 408 347 459 289 53 27 chr11 129910205 129910430 -20873123 - MLT1J2 LTR MaLR -183 267 37 626 139 122 0 chr11 129910534 129910649 -20872904 + AluJb SINE Alu 6 134 -178 14645 31 3 0 chr11 129910693 129912518 -20871035 - L1PA3 LINE L1 -972 5174 3345 7505 23 0 0 chr11 129912518 129913519 -20870034 + L1PA3 LINE L1 5155 6155 0 1011 199 19 10 chr11 129913552 129913797 -20869756 + AluJb SINE Alu 105 351 0 272 299 107 75 chr11 129913870 129914057 -20869496 + MIR SINE MIR 60 252 -10 459 231 46 52 chr11 129914463 129914636 -20868917 - L2 LINE L2 -23 3290 3119 1036 205 4 15 chr11 129914647 129914910 -20868643 + L1MA4 LINE L1 6030 6289 -11 2328 104 10 3 chr11 129915030 129915338 -20868215 + AluSx SINE Alu 1 310 -2 529 86 19 29 chr11 129915348 129915453 -20868100 + (GGAA)n Simple_repeat Simple_repeat 2 105 0 393 233 37 0 chr11 129915454 129915615 -20867938 - L2 LINE L2 -236 3036 2868 272 250 42 33 chr11 129915893 129916013 -20867540 - Tigger1 DNA MER2_type -1326 1092 972 191 290 65 0 chr11 129917136 129917198 -20866355 - MIR SINE MIR -77 185 120 1125 139 35 0 chr11 129917198 129917370 -20866183 + AluSg/x SINE Alu 135 312 0 261 83 0 0 chr11 129917399 129917435 -20866118 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 335 365 22 70 chr11 129918147 129918498 -20865055 - L2 LINE L2 -2 3270 2939 207 0 0 0 chr11 129918498 129918521 -20865032 + (GGAGA)n Simple_repeat Simple_repeat 3 25 0 335 365 22 70 chr11 129918521 129918572 -20864981 - L2 LINE L2 -333 2939 2887 331 305 152 7 chr11 129918684 129918835 -20864718 - MIR3 SINE MIR -15 193 21 237 351 13 0 chr11 129919513 129919590 -20863963 + MIR SINE MIR 18 95 -113 357 266 21 0 chr11 129919790 129919884 -20863669 + MIR SINE MIR 161 256 -6 2179 207 86 35 chr11 129920393 129920938 -20862615 - LTR39 LTR ERV1 0 783 211 221 120 40 0 chr11 129920942 129920992 -20862561 + CT-rich Low_complexity Low_complexity 1 52 0 1742 208 42 39 chr11 129921083 129921491 -20862062 + LTR2 LTR ERV1 41 449 0 833 136 0 0 chr11 129921493 129921611 -20861942 - AluJb SINE Alu -194 118 1 1207 103 75 19 chr11 129921612 129921825 -20861728 - LTR39 LTR ERV1 -558 225 1 1051 152 10 44 chr11 129922062 129922266 -20861287 - MER20 DNA MER1_type -19 200 4 649 293 67 5 chr11 129923887 129924095 -20859458 - MIR SINE MIR -15 247 27 215 133 22 0 chr11 129924108 129924153 -20859400 + CT-rich Low_complexity Low_complexity 2 47 0 342 310 75 36 chr11 129924404 129924736 -20858817 + L2 LINE L2 2831 3175 -97 212 303 80 57 chr11 129924747 129924922 -20858631 - L2 LINE L2 -10 3303 3125 339 289 157 24 chr11 129925169 129925335 -20858218 - MLT1J LTR MaLR 0 511 324 2268 114 13 0 chr11 129925418 129925725 -20857828 + AluSx SINE Alu 1 311 -1 4933 147 28 29 chr11 129925766 129926965 -20856588 - L1MB3 LINE L1 -1 6182 4988 212 333 40 0 chr11 129927313 129927412 -20856141 + MIR SINE MIR 51 153 -109 465 242 28 67 chr11 129927454 129927632 -20855921 - MIR SINE MIR -57 205 35 206 267 0 27 chr11 129928005 129928080 -20855473 + C-rich Low_complexity Low_complexity 5 77 0 339 232 92 83 chr11 129928577 129928749 -20854804 + MIR SINE MIR 4 175 -62 621 279 77 14 chr11 129929709 129929917 -20853636 + MIR SINE MIR 28 248 -14 544 268 101 0 chr11 129930453 129930621 -20852932 - MIR SINE MIR -1 261 77 212 316 51 0 chr11 129930703 129930782 -20852771 - L2 LINE L2 0 3313 3231 373 283 9 18 chr11 129931763 129931876 -20851677 + MIR SINE MIR 77 188 -74 285 306 135 0 chr11 129932266 129932377 -20851176 - L2 LINE L2 -527 2787 2662 226 228 18 18 chr11 129933012 129933069 -20850484 + CT-rich Low_complexity Low_complexity 1 57 0 308 242 0 0 chr11 129933667 129933729 -20849824 - L2 LINE L2 0 3272 3211 300 366 49 0 chr11 129933752 129933875 -20849678 - MIR3 SINE MIR -78 130 2 1898 151 78 30 chr11 129934621 129934833 -20848720 - MLT1B LTR MaLR 0 390 190 243 0 0 0 chr11 129934833 129934860 -20848693 + (TG)n Simple_repeat Simple_repeat 2 28 0 2005 116 11 0 chr11 129934860 129935145 -20848408 - AluSg SINE Alu -22 288 1 1898 151 78 30 chr11 129935145 129935303 -20848250 - MLT1B LTR MaLR -199 191 1 184 305 17 0 chr11 129935336 129935395 -20848158 - MIR3 SINE MIR -140 68 9 275 298 49 0 chr11 129936396 129936487 -20847066 - MIR SINE MIR -62 146 59 443 297 59 15 chr11 129937185 129937419 -20846134 + MIR SINE MIR 1 250 -12 1749 126 54 0 chr11 129937733 129938076 -20845477 - AluSx SINE Alu 0 312 1 530 289 83 15 chr11 129938788 129938992 -20844561 - L2 LINE L2 -181 3132 2915 474 349 0 12 chr11 129939079 129939248 -20844305 - L3 LINE CR1 -4 1573 1407 1768 72 0 17 chr11 129939250 129939486 -20844067 - L1PA6 LINE L1 0 6154 5923 460 164 9 18 chr11 129939532 129939642 -20843911 - L1MB2 LINE L1 -4 6167 6059 1827 132 69 0 chr11 129939666 129939955 -20843598 - MER1B DNA MER1_type -30 309 1 2533 139 20 13 chr11 129939955 129940402 -20843151 - L1MB2 LINE L1 -149 6022 5573 251 307 0 23 chr11 129941394 129941482 -20842071 + MIR3 SINE MIR 76 161 -47 2097 102 0 24 chr11 129943405 129943700 -20839853 - AluJb SINE Alu -24 288 1 385 279 134 58 chr11 129943917 129944089 -20839464 + MER5A DNA MER1_type 4 188 -1 351 222 43 51 chr11 129944155 129944272 -20839281 - MER5B DNA MER1_type -1 177 62 2035 133 3 0 chr11 129944272 129944573 -20838980 - AluJb SINE Alu -10 302 1 3476 146 44 10 chr11 129944583 129945173 -20838380 - L1MB4 LINE L1 -1 6179 5570 1728 86 0 0 chr11 129945190 129945434 -20838119 - AluSg SINE Alu 0 305 62 245 300 29 0 chr11 129945471 129945541 -20838012 - L2 LINE L2 0 3313 3242 1172 267 101 0 chr11 129945720 129946068 -20837485 + MLT1J1 LTR MaLR 64 446 0 283 307 0 0 chr11 129946456 129946531 -20837022 - L3 LINE CR1 -3 1574 1500 2159 111 3 0 chr11 129948122 129948420 -20835133 + AluSx SINE Alu 1 299 -13 325 247 25 12 chr11 129948913 129948994 -20834559 + L2 LINE L2 3187 3268 -4 325 300 133 0 chr11 129950322 129950442 -20833111 + MIR SINE MIR 116 251 -11 408 40 0 0 chr11 129950661 129950711 -20832842 + (CA)n Simple_repeat Simple_repeat 2 51 0 441 54 0 0 chr11 129950825 129950881 -20832672 + (TG)n Simple_repeat Simple_repeat 2 57 0 442 266 105 20 chr11 129950925 129951125 -20832428 + MIR SINE MIR 32 243 -19 708 294 109 94 chr11 129952608 129953025 -20830528 - L2 LINE L2 -435 2879 2470 2417 68 0 3 chr11 129953025 129953334 -20830219 + AluY SINE Alu 1 308 -3 708 294 109 94 chr11 129953334 129953881 -20829672 - L2 LINE L2 -844 2470 1901 242 312 39 0 chr11 129953920 129953997 -20829556 + MIR SINE MIR 176 255 -7 2154 113 0 0 chr11 129954549 129954865 -20828688 - AluSx SINE Alu 0 316 1 356 296 39 37 chr11 129956568 129956608 -20826945 - L1ME3A LINE L1 -1 6169 6131 2084 114 0 7 chr11 129956608 129956916 -20826637 + AluSx SINE Alu 1 306 -6 356 296 39 37 chr11 129956916 129957567 -20825986 - L1ME3A LINE L1 -39 6131 5522 1806 50 0 0 chr11 129957567 129957788 -20825765 - AluY SINE Alu -90 221 1 356 296 39 37 chr11 129957788 129957882 -20825671 - L1ME3A LINE L1 -648 5522 5430 212 322 117 47 chr11 129958846 129959017 -20824536 - MIR SINE MIR -47 215 33 3169 204 41 14 chr11 129961197 129961399 -20822154 - L1MB3 LINE L1 0 6183 5988 1798 98 94 4 chr11 129961399 129961664 -20821889 - AluSx SINE Alu -23 289 1 3169 204 41 14 chr11 129961664 129962185 -20821368 - L1MB3 LINE L1 -195 5988 5440 369 0 0 0 chr11 129962299 129962340 -20821213 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 716 297 62 31 chr11 129962340 129962630 -20820923 - L2 LINE L2 -17 3296 2998 814 200 78 0 chr11 129962658 129962863 -20820690 - L2 LINE L2 -419 2895 2675 468 293 16 0 chr11 129964151 129964274 -20819279 - MER5B DNA MER1_type 0 178 54 521 221 24 16 chr11 129964533 129964660 -20818893 - MER5A DNA MER1_type -3 186 59 255 122 0 0 chr11 129964669 129964718 -20818835 + FLAM_A SINE Alu 84 132 -1 298 125 125 0 chr11 129964727 129964783 -20818770 - MER5A DNA MER1_type -123 66 4 307 235 94 49 chr11 129967036 129967242 -20816311 - LTR33 LTR ERVL 0 521 269 268 194 113 0 chr11 129970951 129971013 -20812540 + MIR SINE MIR 92 160 -102 2194 117 0 0 chr11 129971108 129971415 -20812138 + AluSx SINE Alu 1 307 -5 389 315 47 0 chr11 129971517 129971644 -20811909 - MIR SINE MIR -73 189 57 1371 268 145 22 chr11 129971683 129972228 -20811325 - MLT1L LTR MaLR 0 615 4 217 340 103 36 chr11 129972628 129972822 -20810731 - L2 LINE L2 -547 2767 2561 247 361 52 31 chr11 129973258 129973546 -20810007 + L1MEd LINE L1 541 834 -5285 495 285 16 0 chr11 129973572 129973765 -20809788 + L1MEd LINE L1 896 1091 -5028 425 289 181 7 chr11 129973766 129973915 -20809638 - MER5A DNA MER1_type -11 178 4 1527 299 66 26 chr11 129973935 129974074 -20809479 + L1MEd LINE L1 1170 1302 -4827 1935 105 7 4 chr11 129974074 129974350 -20809203 + AluSg SINE Alu 34 310 0 1527 299 66 26 chr11 129974350 129974848 -20808705 + L1MEd LINE L1 1302 1779 -4350 2018 132 0 13 chr11 129974848 129975152 -20808401 + AluSx SINE Alu 1 300 -12 1527 299 66 26 chr11 129975152 129975990 -20807563 + L1MEd LINE L1 1779 2661 -3468 187 361 0 0 chr11 129976027 129976088 -20807465 - L2 LINE L2 -831 2483 2423 452 238 69 25 chr11 129976190 129976247 -20807306 - MIR SINE MIR 0 262 209 2050 109 31 0 chr11 129976247 129976541 -20807012 - AluSx SINE Alu -9 303 1 452 238 69 25 chr11 129976541 129976643 -20806910 - MIR SINE MIR -53 209 96 264 262 178 0 chr11 129978265 129978372 -20805181 - L2 LINE L2 -3 3310 3185 1818 247 76 46 chr11 129978738 129979373 -20804180 - L1ME3A LINE L1 -28 6142 5489 398 312 35 21 chr11 129979601 129979742 -20803811 + L2 LINE L2 3126 3268 -4 1106 284 63 57 chr11 129980480 129980780 -20802773 - L1ME4a LINE L1 -1 6120 5823 1990 118 7 0 chr11 129980780 129981067 -20802486 - AluSx SINE Alu -15 297 9 1106 284 63 57 chr11 129981067 129981624 -20801929 - L1ME4a LINE L1 -298 5823 5258 446 318 123 31 chr11 129981628 129981689 -20801864 - L1ME4a LINE L1 -894 5252 5198 2193 122 3 3 chr11 129981689 129982001 -20801552 - AluSq SINE Alu -1 312 1 446 318 123 31 chr11 129982001 129982200 -20801353 - L1ME4a LINE L1 -948 5198 4968 217 239 0 0 chr11 129982988 129983034 -20800519 + (TG)n Simple_repeat Simple_repeat 1 46 0 404 257 0 7 chr11 129985552 129985704 -20797849 + (CA)n Simple_repeat Simple_repeat 1 151 0 552 219 0 17 chr11 129985722 129985900 -20797653 + (CA)n Simple_repeat Simple_repeat 1 175 0 538 235 0 16 chr11 129985929 129986112 -20797441 + (CA)n Simple_repeat Simple_repeat 1 180 0 377 338 121 23 chr11 129986654 129987050 -20796503 + L2 LINE L2 2171 2605 -709 192 40 0 0 chr11 129987135 129987160 -20796393 + (T)n Simple_repeat Simple_repeat 1 25 0 2161 101 0 28 chr11 129987276 129987593 -20795960 - AluSx SINE Alu -4 308 1 270 369 41 66 chr11 129987680 129988119 -20795434 + L2 LINE L2 2842 3269 -3 320 277 44 66 chr11 129989510 129989635 -20793918 + MIR3 SINE MIR 47 168 -40 384 257 188 0 chr11 129989635 129989779 -20793774 - MER5A DNA MER1_type 0 189 19 226 240 20 60 chr11 129990555 129990655 -20792898 + C-rich Low_complexity Low_complexity 5 100 0 228 225 0 0 chr11 129990614 129990654 -20792899 + polypyrimidine Low_complexity Low_complexity 2 41 0 278 282 47 0 chr11 129991469 129991554 -20791999 - MLT1I LTR MaLR -2 407 319 279 133 0 0 chr11 129991665 129991710 -20791843 + (CA)n Simple_repeat Simple_repeat 2 46 0 238 280 27 27 chr11 129991819 129991894 -20791659 - L2 LINE L2 -220 3052 2978 270 275 0 25 chr11 129993084 129993164 -20790389 + L2 LINE L2 3178 3255 -17 222 354 92 8 chr11 129993167 129993297 -20790256 - L2 LINE L2 -1 3312 3172 518 225 6 0 chr11 129993390 129993568 -20789985 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 254 286 6 0 chr11 129993593 129993764 -20789789 + (TGGA)n Simple_repeat Simple_repeat 1 172 0 297 303 8 0 chr11 129993782 129993901 -20789652 + (TGAA)n Simple_repeat Simple_repeat 2 121 0 601 194 12 0 chr11 129993903 129994063 -20789490 + (TGGA)n Simple_repeat Simple_repeat 4 165 0 185 320 58 39 chr11 129995181 129995284 -20788269 + MIR SINE MIR 48 152 -56 1412 146 43 43 chr11 129995324 129995625 -20787928 + AluJb SINE Alu 11 311 -1 405 226 113 57 chr11 129995998 129996157 -20787396 + MIR3 SINE MIR 22 189 -19 581 268 42 26 chr11 129997628 129997818 -20785735 + MIR SINE MIR 9 201 -61 550 302 55 6 chr11 129998255 129998437 -20785116 + MIR SINE MIR 29 219 -43 758 288 33 76 chr11 129998448 129998551 -20785002 + L3 LINE CR1 1101 1207 -370 1741 90 120 19 chr11 129998551 129998817 -20784736 + AluSg SINE Alu 1 293 -17 758 288 33 76 chr11 129998817 129999081 -20784472 + L3 LINE CR1 1207 1452 -125 507 271 26 26 chr11 129999105 129999260 -20784293 - MIR SINE MIR 0 262 108 205 204 0 0 chr11 129999577 129999621 -20783932 - L2 LINE L2 -19 3294 3251 979 177 20 30 chr11 130000318 130000516 -20783037 - AluJb SINE Alu 0 312 117 408 344 76 0 chr11 130000623 130000780 -20782773 + MER5B DNA MER1_type 8 176 -2 221 316 53 44 chr11 130000791 130000905 -20782648 - L3 LINE CR1 -333 1244 1130 2228 115 0 0 chr11 130000971 130001275 -20782278 - AluSq SINE Alu -8 305 2 342 330 41 41 chr11 130004443 130004713 -20778840 - L2 LINE L2 0 3272 3003 373 241 71 71 chr11 130005760 130005901 -20777652 + MIR3 SINE MIR 33 173 -35 523 248 16 8 chr11 130006100 130006229 -20777324 + L2 LINE L2 3182 3311 -2 2068 124 7 0 chr11 130008461 130008760 -20774793 - AluSx SINE Alu -11 301 1 281 352 14 35 chr11 130008760 130008902 -20774651 + MIR SINE MIR 100 238 -24 2232 75 10 3 chr11 130009489 130009781 -20773772 - AluSq SINE Alu -19 294 1 210 281 31 0 chr11 130011292 130011356 -20772197 + MIR3 SINE MIR 110 175 -33 617 252 54 50 chr11 130012804 130013026 -20770527 + MIR SINE MIR 34 256 -6 329 263 34 78 chr11 130013191 130013376 -20770177 + MIR SINE MIR 13 188 -58 1858 162 6 13 chr11 130013401 130013715 -20769838 + AluJo SINE Alu 1 312 0 756 297 21 0 chr11 130013962 130014154 -20769399 - MER91A DNA MER1_type 0 196 1 354 296 72 24 chr11 130014355 130014480 -20769073 + MIR3 SINE MIR 15 145 -63 525 122 31 41 chr11 130014514 130014612 -20768941 + FLAM_C SINE Alu 46 142 -1 947 164 0 0 chr11 130014666 130014818 -20768735 + AluJb SINE Alu 156 307 -5 327 365 14 14 chr11 130015373 130015521 -20768032 + MIR3 SINE MIR 58 205 -3 362 257 48 121 chr11 130016030 130016236 -20767317 + L2 LINE L2 2987 3177 -95 201 74 0 0 chr11 130017137 130017164 -20766389 + (GA)n Simple_repeat Simple_repeat 1 27 0 316 337 47 36 chr11 130018342 130018535 -20765018 - MIR SINE MIR -66 196 2 2010 119 3 20 chr11 130019323 130019626 -20763927 - AluSx SINE Alu -14 298 1 307 242 33 0 chr11 130020219 130020310 -20763243 + L2 LINE L2 2957 3050 -222 2328 93 0 0 chr11 130020380 130020682 -20762871 - AluSg1 SINE Alu -7 302 1 1562 159 3 80 chr11 130020722 130021036 -20762517 + AluJo SINE Alu 1 290 -22 259 261 246 8 chr11 130021398 130021528 -20762025 - MIR3 SINE MIR -5 203 43 426 360 10 30 chr11 130021748 130021945 -20761608 + MIR SINE MIR 20 212 -50 411 351 30 6 chr11 130022504 130022669 -20760884 + MIR SINE MIR 46 214 -48 345 285 51 93 chr11 130022868 130022932 -20760621 - MIR SINE MIR 0 262 197 189 0 0 0 chr11 130022932 130022953 -20760600 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1917 121 3 28 chr11 130022955 130023244 -20760309 - AluSx SINE Alu -30 282 1 345 285 51 93 chr11 130023244 130023390 -20760163 - MIR SINE MIR -66 196 58 377 336 34 0 chr11 130024409 130024555 -20758998 - L2 LINE L2 0 3272 3122 464 268 0 8 chr11 130024786 130024913 -20758640 - MER112 DNA MER1_type -6 254 129 430 345 35 14 chr11 130025098 130025243 -20758310 + MIR SINE MIR 28 175 -87 889 123 0 8 chr11 130025467 130025597 -20757956 + AluSq/x SINE Alu 1 129 -183 477 239 142 19 chr11 130026267 130026422 -20757131 + MIR SINE MIR 20 193 -69 1720 148 0 49 chr11 130026424 130026748 -20756805 + AluJb SINE Alu 1 308 -4 352 182 230 0 chr11 130026871 130026982 -20756571 - MIR SINE MIR -66 142 17 742 315 61 107 chr11 130027909 130028184 -20755369 - L3 LINE CR1 -83 1494 1208 1495 198 3 7 chr11 130028184 130028472 -20755081 - AluJo SINE Alu -4 308 22 742 315 61 107 chr11 130028472 130028935 -20754618 - L3 LINE CR1 -369 1208 790 591 251 204 14 chr11 130030480 130030691 -20752862 - MIR SINE MIR -10 252 2 1474 244 84 16 chr11 130031103 130031530 -20752023 + MLT1C LTR MaLR 6 461 -6 246 269 13 26 chr11 130031538 130031616 -20751937 + MIR3 SINE MIR 86 162 -46 203 262 255 28 chr11 130031618 130031759 -20751794 + MER5B DNA MER1_type 6 178 0 300 270 9 43 chr11 130031835 130031950 -20751603 + MIR SINE MIR 117 227 -35 855 214 24 39 chr11 130033031 130033237 -20750316 - MER63A DNA MER1_type -5 205 3 252 327 37 9 chr11 130033418 130033525 -20750028 - MIR3 SINE MIR -14 194 85 215 327 181 24 chr11 130034976 130035181 -20748372 + MIR SINE MIR 20 256 -6 193 233 83 0 chr11 130035385 130035445 -20748108 - MIR SINE MIR 0 262 198 207 69 0 0 chr11 130035445 130035474 -20748079 + (TC)n Simple_repeat Simple_repeat 1 29 0 423 0 0 0 chr11 130035482 130035529 -20748024 + (TG)n Simple_repeat Simple_repeat 2 48 0 1840 118 32 4 chr11 130035530 130035809 -20747744 - AluSq SINE Alu -26 287 1 422 314 17 29 chr11 130036531 130036703 -20746850 + MER5A DNA MER1_type 16 185 -4 216 0 0 0 chr11 130036852 130036876 -20746677 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 459 63 0 0 chr11 130037092 130037155 -20746398 + (TG)n Simple_repeat Simple_repeat 1 63 0 2440 54 0 22 chr11 130037863 130038177 -20745376 + AluY SINE Alu 1 307 -4 240 35 0 0 chr11 130038333 130038362 -20745191 + (A)n Simple_repeat Simple_repeat 1 29 0 3048 198 43 19 chr11 130040174 130040500 -20743053 + L1MB8 LINE L1 5492 5809 -369 1003 166 0 6 chr11 130040500 130040657 -20742896 + FRAM SINE Alu 1 156 -10 3048 198 43 19 chr11 130040657 130041001 -20742552 + L1MB8 LINE L1 5809 6178 0 316 340 14 18 chr11 130041003 130041178 -20742375 + MIR SINE MIR 14 183 -62 649 221 32 7 chr11 130042013 130042167 -20741386 - MIR SINE MIR -81 181 24 1852 94 8 0 chr11 130042613 130042857 -20740696 + AluSg SINE Alu 34 279 -31 523 287 20 31 chr11 130042864 130043076 -20740477 + MIR SINE MIR 7 213 -49 * 548 306 58 29 chr11 130043057 130043117 -20740436 - MIR SINE MIR -10 252 195 462 79 0 0 chr11 130043117 130043180 -20740373 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 548 306 58 29 chr11 130043180 130043361 -20740192 - MIR SINE MIR -67 195 4 206 242 8 133 chr11 130044303 130044423 -20739130 + L3 LINE CR1 1463 1567 -10 433 261 31 23 chr11 130044985 130045115 -20738438 - MIR3 SINE MIR -38 170 40 290 329 80 0 chr11 130045924 130046061 -20737492 - MIR SINE MIR -56 206 59 2168 102 0 20 chr11 130046334 130046639 -20736914 - AluSx SINE Alu -13 299 1 449 330 51 0 chr11 130046906 130047082 -20736471 + MIR3 SINE MIR 1 185 -23 355 331 91 49 chr11 130048744 130049052 -20734501 + L3 LINE CR1 1008 1328 -249 278 284 136 0 chr11 130049103 130049191 -20734362 + L3 LINE CR1 1469 1568 -9 269 211 35 0 chr11 130049209 130049266 -20734287 + L2 LINE L2 3213 3271 -1 503 221 41 35 chr11 130049370 130049515 -20734038 - MER5A DNA MER1_type -1 188 43 326 349 58 32 chr11 130050995 130051184 -20732369 + MIR SINE MIR 21 214 -48 424 218 0 0 chr11 130052144 130052222 -20731331 - MER69 DNA AcHobo -2448 78 1 530 248 51 0 chr11 130052227 130052364 -20731189 - MIR SINE MIR -102 160 17 270 322 25 25 chr11 130052441 130052562 -20730991 - MIR3 SINE MIR -5 203 83 397 302 112 28 chr11 130052745 130052960 -20730593 + MIR SINE MIR 2 234 -28 390 303 21 14 chr11 130053386 130053531 -20730022 + MIR SINE MIR 117 262 0 2105 108 17 0 chr11 130053745 130054041 -20729512 + AluSx SINE Alu 1 301 -11 309 216 54 0 chr11 130054642 130054716 -20728837 - MIR SINE MIR -48 214 137 419 281 78 16 chr11 130054732 130054860 -20728693 - L2 LINE L2 0 3272 3137 198 139 209 0 chr11 130054844 130054887 -20728666 - MIR SINE MIR -72 136 85 * 935 286 57 40 chr11 130056080 130056535 -20727018 - L2 LINE L2 -1 3271 2809 184 381 72 6 chr11 130057039 130057220 -20726333 - L2 LINE L2 -464 2850 2658 197 305 19 57 chr11 130057829 130057934 -20725619 - MIR3 SINE MIR -14 194 94 432 299 38 43 chr11 130058406 130058445 -20725108 - MIR3 SINE MIR -3 205 167 2222 48 45 7 chr11 130058445 130058737 -20724816 + AluY SINE Alu 1 303 -8 432 299 38 43 chr11 130058737 130058881 -20724672 - MIR3 SINE MIR -41 167 23 356 242 40 10 chr11 130061380 130061479 -20722074 + MIR SINE MIR 49 150 -112 782 250 60 0 chr11 130061584 130061784 -20721769 + MIR SINE MIR 14 225 -37 1172 152 4 72 chr11 130061921 130062171 -20721382 - AluJo SINE Alu -31 281 49 254 300 105 74 chr11 130063552 130063742 -20719811 + MIR3 SINE MIR 11 206 -2 704 260 150 0 chr11 130064277 130064504 -20719049 - MIR SINE MIR 0 262 2 1124 227 103 37 chr11 130064951 130065489 -20718064 - L2 LINE L2 -12 3301 2730 180 365 24 0 chr11 130066796 130066881 -20716672 - MIR SINE MIR -113 149 63 545 245 151 0 chr11 130067843 130067982 -20715571 + MER5A DNA MER1_type 14 173 -16 23 0 0 0 chr11 130068338 130068361 -20715192 + AT_rich Low_complexity Low_complexity 1 23 0 289 315 110 0 chr11 130068488 130068634 -20714919 + L2 LINE L2 2609 2770 -544 406 296 4 9 chr11 130069461 130069602 -20713951 - MIR SINE MIR -61 147 9 246 62 0 0 chr11 130069629 130069661 -20713892 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 252 250 16 0 chr11 130070129 130070193 -20713360 - MIR SINE MIR -78 130 66 545 275 140 13 chr11 130070218 130070447 -20713106 + MIR SINE MIR 4 261 -1 318 50 0 0 chr11 130071034 130071074 -20712479 + (A)n Simple_repeat Simple_repeat 1 40 0 279 54 0 0 chr11 130071213 130071250 -20712303 + (A)n Simple_repeat Simple_repeat 1 37 0 534 245 133 7 chr11 130071974 130072117 -20711436 - MIR3 SINE MIR -15 193 33 213 39 0 0 chr11 130073617 130073643 -20709910 + (ATG)n Simple_repeat Simple_repeat 1 26 0 1858 149 0 19 chr11 130074033 130074348 -20709205 - AluJo SINE Alu -3 309 1 197 227 0 0 chr11 130074389 130074433 -20709120 - L2 LINE L2 -9 3304 3261 339 276 36 20 chr11 130075330 130075469 -20708084 + MIR SINE MIR 17 166 -87 322 262 36 0 chr11 130075875 130075959 -20707594 - MIR SINE MIR -80 182 96 222 254 246 48 chr11 130076099 130076225 -20707328 + MER5A DNA MER1_type 32 182 -7 268 250 16 16 chr11 130076972 130077036 -20706517 - L2 LINE L2 0 3272 3209 466 258 84 7 chr11 130077303 130077458 -20706095 - MIR3 SINE MIR -18 190 24 1915 297 141 30 chr11 130079417 130080354 -20703199 - L3 LINE CR1 -3 1574 534 285 258 16 0 chr11 130080508 130080570 -20702983 - MIR3 SINE MIR -30 178 116 370 370 30 5 chr11 130080580 130080780 -20702773 - L3 LINE CR1 -1061 516 312 291 54 0 0 chr11 130080841 130080878 -20702675 + (TA)n Simple_repeat Simple_repeat 1 37 0 2173 112 0 10 chr11 130080904 130081209 -20702344 + AluSx SINE Alu 1 302 -10 294 341 125 33 chr11 130081677 130082070 -20701483 - L2 LINE L2 -462 2852 2424 309 109 0 0 chr11 130082071 130082117 -20701436 + (T)n Simple_repeat Simple_repeat 1 46 0 716 232 105 5 chr11 130082556 130082746 -20700807 + MIR SINE MIR 46 254 -8 505 295 69 36 chr11 130083768 130084013 -20699540 - MIR SINE MIR -6 256 3 3420 139 31 9 chr11 130084205 130084553 -20699000 - L1MB3 LINE L1 0 6183 5815 2444 80 0 3 chr11 130084553 130084854 -20698699 - AluSc SINE Alu -9 300 1 3420 139 31 9 chr11 130084854 130085088 -20698465 - L1MB3 LINE L1 -368 5815 5588 441 170 0 126 chr11 130085088 130085247 -20698306 + L1PB4 LINE L1 6018 6156 0 1227 160 42 72 chr11 130085247 130085553 -20698000 - L1MB3 LINE L1 -574 5600 5304 406 276 16 16 chr11 130086483 130086610 -20696943 + LTR16B LTR ERVL 338 464 0 226 247 110 14 chr11 130086904 130086977 -20696576 + L2 LINE L2 3193 3272 0 2346 85 0 0 chr11 130087768 130088081 -20695472 + AluSx SINE Alu 1 313 0 490 263 179 59 chr11 130089038 130089445 -20694108 + L2 LINE L2 2817 3272 0 267 310 86 9 chr11 130090492 130090608 -20692945 + L2 LINE L2 3132 3256 -16 182 194 0 0 chr11 130090675 130090711 -20692842 - L2 LINE L2 -21 3251 3216 * 441 183 237 8 chr11 130090680 130090811 -20692742 - MIR SINE MIR -20 242 82 380 158 13 0 chr11 130090887 130090963 -20692590 + GA-rich Low_complexity Low_complexity 3 79 0 23 0 0 0 chr11 130090991 130091014 -20692539 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 130091231 130091252 -20692301 + AT_rich Low_complexity Low_complexity 1 21 0 351 160 53 13 chr11 130092611 130092686 -20690867 + MIR SINE MIR 83 160 -102 213 333 115 0 chr11 130093448 130093544 -20690009 + MIR SINE MIR 35 141 -67 2455 87 0 3 chr11 130094308 130094618 -20688935 - AluSc SINE Alu 0 309 1 236 203 31 47 chr11 130094697 130094761 -20688792 + L3 LINE CR1 1417 1479 -98 334 293 83 68 chr11 130094954 130095159 -20688394 - L3 LINE CR1 -2 1575 1368 644 215 100 33 chr11 130095177 130095390 -20688163 + MIR SINE MIR 40 262 0 434 251 29 82 chr11 130095709 130095880 -20687673 + MIR SINE MIR 31 192 -70 1528 204 19 48 chr11 130095978 130096356 -20687197 - MLT1A2 LTR MaLR -6 368 2 693 259 65 5 chr11 130097337 130097538 -20686015 + MIR SINE MIR 48 260 -2 205 340 43 0 chr11 130097550 130097644 -20685909 - L2 LINE L2 -38 3234 3137 195 152 0 0 chr11 130098126 130098159 -20685394 - MIR SINE MIR -118 144 112 21 0 0 0 chr11 130098894 130098915 -20684638 + AT_rich Low_complexity Low_complexity 1 21 0 1892 124 27 60 chr11 130099902 130100200 -20683353 - AluSx SINE Alu -24 288 1 897 223 67 18 chr11 130100738 130100962 -20682591 + MIR SINE MIR 5 239 -23 201 237 153 0 chr11 130101216 130101275 -20682278 - L3b LINE CR1 -3 1580 1513 2086 128 0 20 chr11 130101323 130101628 -20681925 + AluSq SINE Alu 6 304 -9 547 286 0 8 chr11 130102233 130102359 -20681194 - L2 LINE L2 0 3272 3148 243 279 25 0 chr11 130102367 130102446 -20681107 + L2 LINE L2 3184 3264 -8 403 296 2 0 chr11 130103006 130103123 -20680430 + MIR SINE MIR 15 133 -75 1471 203 9 22 chr11 130103423 130103739 -20679814 + MER58B DNA MER1_type 29 340 -1 274 325 73 13 chr11 130104222 130104373 -20679180 + MER117 DNA MER1_type 1 160 -37 185 391 22 0 chr11 130104444 130104536 -20679017 + L2 LINE L2 3145 3238 -34 1709 174 62 0 chr11 130106683 130107005 -20676548 + L1MB8 LINE L1 5492 5833 -345 1061 131 0 0 chr11 130107009 130107154 -20676399 + FRAM SINE Alu 1 145 -31 539 278 25 35 chr11 130107161 130107373 -20676180 + MIR SINE MIR 7 213 -49 * 593 306 58 29 chr11 130107354 130107414 -20676139 - MIR SINE MIR -10 252 195 534 70 0 0 chr11 130107414 130107485 -20676068 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 593 306 58 29 chr11 130107485 130107666 -20675887 - MIR SINE MIR -67 195 4 230 242 8 133 chr11 130108610 130108730 -20674823 + L3 LINE CR1 1463 1567 -10 457 261 31 23 chr11 130109292 130109422 -20674131 - MIR3 SINE MIR -38 170 40 307 329 80 0 chr11 130110232 130110369 -20673184 - MIR SINE MIR -56 206 59 228 54 0 0 chr11 130110641 130110678 -20672875 - Alu SINE Alu -3 296 260 1303 142 24 20 chr11 130110780 130111026 -20672527 + L1MB2 LINE L1 5776 6022 -149 1772 128 69 0 chr11 130111026 130111315 -20672238 + MER1B DNA MER1_type 1 309 -30 437 164 10 19 chr11 130111346 130111450 -20672103 + L1MB2 LINE L1 6065 6167 -4 1555 83 0 37 chr11 130111497 130111738 -20671815 + L1PA6 LINE L1 5923 6154 0 504 338 0 12 chr11 130111740 130111900 -20671653 + L3 LINE CR1 1407 1564 -13 572 289 83 15 chr11 130111996 130112200 -20671353 + L2 LINE L2 2915 3132 -181 1954 125 52 0 chr11 130112912 130113201 -20670352 + AluSx SINE Alu 1 304 -8 1129 147 30 0 chr11 130113235 130113432 -20670121 + MLT1B LTR MaLR 188 390 0 313 366 49 0 chr11 130114178 130114301 -20669252 + MIR3 SINE MIR 2 130 -78 321 242 0 0 chr11 130114324 130114386 -20669167 + L2 LINE L2 3211 3272 0 226 228 18 18 chr11 130114984 130115041 -20668512 + GA-rich Low_complexity Low_complexity 1 57 0 309 270 9 43 chr11 130115972 130116087 -20667466 + MIR SINE MIR 117 227 -35 454 265 42 13 chr11 130116618 130116805 -20666748 + L2 LINE L2 2617 3269 -3 219 250 0 0 chr11 130116880 130116928 -20666625 + L2 LINE L2 3008 3055 -217 2487 93 0 0 chr11 130117031 130117341 -20666212 + AluSq SINE Alu 1 310 -3 777 205 126 0 chr11 130118242 130118432 -20665121 - MER58A DNA MER1_type -2 222 9 532 280 16 33 chr11 130118437 130118544 -20665009 - MIR SINE MIR -32 230 126 1713 137 45 67 chr11 130118544 130118858 -20664695 + AluSx SINE Alu 1 307 -5 532 280 16 33 chr11 130118858 130118932 -20664621 - MIR SINE MIR -136 126 52 600 239 14 21 chr11 130119027 130119169 -20664384 - MIR SINE MIR -109 153 13 638 189 41 80 chr11 130120042 130120243 -20663310 + MIR SINE MIR 28 261 -1 438 284 0 0 chr11 130120421 130120516 -20663037 - MIR SINE MIR -115 147 53 334 331 54 60 chr11 130120626 130120958 -20662595 - L3 LINE CR1 -168 1409 1080 348 154 31 15 chr11 130120994 130121124 -20662429 + (TA)n Simple_repeat Simple_repeat 1 132 0 300 173 93 27 chr11 130121124 130121199 -20662354 + L1MC4 LINE L1 6613 6692 -1350 649 37 25 0 chr11 130121201 130121282 -20662271 - AluY SINE Alu -16 295 213 2494 136 9 26 chr11 130121641 130122067 -20661486 + L1MA5 LINE L1 5882 6300 0 364 356 73 5 chr11 130122135 130122340 -20661213 - L3 LINE CR1 -623 954 736 * 637 255 212 9 chr11 130122338 130122550 -20661003 + MIR SINE MIR 6 260 -2 1139 348 78 24 chr11 130122582 130123214 -20660339 - L3 LINE CR1 -847 730 65 300 83 0 0 chr11 130125190 130125238 -20658315 + (CAAAA)n Simple_repeat Simple_repeat 5 52 0 388 211 200 0 chr11 130125487 130125624 -20657929 + MIR SINE MIR 19 192 -61 411 83 0 0 chr11 130125626 130125686 -20657867 + (TG)n Simple_repeat Simple_repeat 1 60 0 773 247 23 46 chr11 130126378 130126597 -20656956 - MIR SINE MIR -2 260 47 1722 187 31 37 chr11 130127423 130129174 -20654379 + L1MB8 LINE L1 3744 5530 -648 2436 182 31 41 chr11 130129174 130129358 -20654195 + MLT1D LTR MaLR 1 185 -320 2271 104 0 0 chr11 130129358 130129645 -20653908 + AluSc SINE Alu 1 287 -22 2436 182 31 41 chr11 130129645 130129970 -20653583 + MLT1D LTR MaLR 185 505 0 1722 187 31 37 chr11 130129970 130130616 -20652937 + L1MB8 LINE L1 5530 6178 0 333 293 49 16 chr11 130131147 130131270 -20652283 + L2 LINE L2 3180 3306 -7 448 299 64 44 chr11 130131620 130131824 -20651729 - MIR SINE MIR -33 229 22 271 303 172 8 chr11 130131845 130131967 -20651586 + MIR3 SINE MIR 54 195 -13 276 30 0 0 chr11 130132226 130132259 -20651294 + (TTA)n Simple_repeat Simple_repeat 2 34 0 195 211 56 100 chr11 130132654 130132744 -20650809 + L2 LINE L2 3225 3310 -3 346 246 142 37 chr11 130134084 130134218 -20649335 + L2 LINE L2 3164 3311 -2 355 254 29 11 chr11 130134788 130134899 -20648654 - MIR SINE MIR -36 172 59 1580 255 63 27 chr11 130135486 130136007 -20647546 - MLT1F LTR MaLR 0 542 3 227 260 55 0 chr11 130136043 130136116 -20647437 - MER20B DNA MER1_type -651 132 56 302 298 127 19 chr11 130136313 130136471 -20647082 + MIR SINE MIR 73 247 -15 187 351 79 6 chr11 130137166 130137331 -20646222 - L2 LINE L2 -262 3051 2875 223 306 231 14 chr11 130137365 130137512 -20646041 - L2 LINE L2 -557 2757 2579 309 339 8 19 chr11 130138495 130138673 -20644880 - MIR SINE MIR -59 203 34 803 219 51 0 chr11 130138707 130138885 -20644668 + MER5A DNA MER1_type 3 189 0 307 119 0 0 chr11 130139166 130139208 -20644345 + MER81 DNA DNA 73 114 0 220 333 48 9 chr11 130139494 130139599 -20643954 + L3 LINE CR1 1380 1488 -89 451 290 102 34 chr11 130139613 130139789 -20643764 - MIR SINE MIR -55 207 20 547 161 25 68 chr11 130139820 130139938 -20643615 + MER81 DNA DNA 1 113 -1 1070 286 67 3 chr11 130140638 130140980 -20642573 + MLT1J1 LTR MaLR 71 434 -12 256 260 60 11 chr11 130140995 130141099 -20642454 - MIR SINE MIR -68 140 41 317 254 8 79 chr11 130141637 130141763 -20641790 - MIR SINE MIR -61 147 31 390 74 0 0 chr11 130142445 130142499 -20641054 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 344 323 46 0 chr11 130142504 130142634 -20640919 - L2 LINE L2 -22 3250 3115 1049 213 83 0 chr11 130143517 130143757 -20639796 - MIR SINE MIR 0 262 3 247 212 45 0 chr11 130143810 130143876 -20639677 - MER5A DNA MER1_type -80 109 41 717 278 113 14 chr11 130144470 130144761 -20638792 + L1ME3A LINE L1 5848 6167 -3 906 181 28 87 chr11 130145162 130145372 -20638181 + MIR SINE MIR 23 217 -45 2327 89 0 26 chr11 130145372 130145685 -20637868 + AluY SINE Alu 1 305 -6 906 181 28 87 chr11 130145685 130145728 -20637825 + MIR SINE MIR 217 261 -1 467 256 19 31 chr11 130146159 130146319 -20637234 + L2 LINE L2 2895 3052 -220 539 253 132 0 chr11 130147488 130147662 -20635891 + MIR SINE MIR 61 257 -5 584 298 66 26 chr11 130147674 130147946 -20635607 - L3 LINE CR1 -112 1465 1183 273 211 42 28 chr11 130150126 130150197 -20633356 + MIR SINE MIR 30 101 -107 192 40 0 0 chr11 130150272 130150297 -20633256 + (CCCCAG)n Simple_repeat Simple_repeat 3 27 0 221 178 25 2 chr11 130152145 130152190 -20631363 + MIR SINE MIR 108 149 -59 550 286 62 42 chr11 130152455 130152696 -20630857 + MIR SINE MIR 10 255 -7 254 326 43 14 chr11 130152734 130152872 -20630681 + MIR3 SINE MIR 6 147 -61 225 220 140 60 chr11 130152901 130153001 -20630552 - MIR SINE MIR -108 154 47 272 226 0 16 chr11 130153298 130153360 -20630193 + L3 LINE CR1 1515 1575 -2 193 241 127 25 chr11 130154829 130154908 -20628645 - MIR SINE MIR -87 175 89 197 282 90 26 chr11 130156053 130156131 -20627422 - MIR SINE MIR -106 156 74 299 315 95 79 chr11 130156131 130156572 -20626981 + L3 LINE CR1 934 1381 -196 709 139 7 21 chr11 130156813 130156957 -20626596 + L1MA4A LINE L1 6159 6300 -3 423 0 0 0 chr11 130157012 130157059 -20626494 + (CA)n Simple_repeat Simple_repeat 2 48 0 2085 127 6 40 chr11 130157134 130157458 -20626095 + AluSp SINE Alu 1 313 0 2238 112 0 3 chr11 130157459 130157753 -20625800 + AluSg1 SINE Alu 1 293 -16 366 301 204 22 chr11 130157756 130157831 -20625722 - L1ME LINE L1 -338 5783 5723 2512 39 0 3 chr11 130157831 130158141 -20625412 - AluY SINE Alu 0 309 1 366 301 204 22 chr11 130158141 130158290 -20625263 - L1ME LINE L1 -398 5723 5517 188 267 27 67 chr11 130158618 130158693 -20624860 + MIR3 SINE MIR 131 202 -6 349 286 151 28 chr11 130159903 130160155 -20623398 - L1MC4a LINE L1 -1889 5919 5637 466 195 159 0 chr11 130160260 130160373 -20623180 - MIR3 SINE MIR -27 181 51 767 226 18 71 chr11 130160904 130161025 -20622528 + MIR SINE MIR 28 133 -129 1909 175 0 0 chr11 130161025 130161328 -20622225 + AluJb SINE Alu 1 303 -9 767 226 18 71 chr11 130161328 130161432 -20622121 + MIR SINE MIR 133 241 -21 221 183 255 0 chr11 130161507 130161588 -20621965 + MIR SINE MIR 54 151 -72 197 234 0 43 chr11 130161793 130161840 -20621713 + L2 LINE L2 3250 3294 -19 230 258 66 60 chr11 130161927 130162017 -20621536 + MIR SINE MIR 111 205 -57 2154 120 0 0 chr11 130162017 130162339 -20621214 + AluSx SINE Alu 1 322 0 230 258 66 60 chr11 130162339 130162398 -20621155 + MIR SINE MIR 205 262 0 616 248 0 7 chr11 130162655 130162796 -20620757 + MER5B DNA MER1_type 27 166 -12 636 248 0 7 chr11 130163123 130163264 -20620289 - MER5B DNA MER1_type -12 166 27 310 288 9 9 chr11 130165184 130165295 -20618258 - MIR SINE MIR -124 138 28 221 234 0 78 chr11 130165507 130165584 -20617969 - L2 LINE L2 -7 3265 3195 244 277 0 60 chr11 130166402 130166485 -20617068 + MIR SINE MIR 64 141 -67 654 267 34 6 chr11 130166631 130166807 -20616746 + MIR SINE MIR 33 213 -49 431 325 41 6 chr11 130167173 130167342 -20616211 + MIR SINE MIR 30 204 -58 235 276 171 0 chr11 130167417 130167522 -20616031 + MIR SINE MIR 90 212 -50 322 223 107 19 chr11 130168103 130168206 -20615347 - MIR SINE MIR -85 177 66 1273 118 90 0 chr11 130168325 130168503 -20615050 + AluSg/x SINE Alu 96 289 -23 448 194 11 11 chr11 130168644 130168737 -20614816 + MIR SINE MIR 170 262 0 189 300 0 0 chr11 130169105 130169165 -20614388 + L2 LINE L2 3205 3264 -8 332 287 35 0 chr11 130169865 130169952 -20613601 + MIR3 SINE MIR 113 202 -6 555 241 26 108 chr11 130170512 130170707 -20612846 + MIR SINE MIR 35 213 -49 198 118 0 0 chr11 130170736 130170770 -20612783 + (TTA)n Simple_repeat Simple_repeat 2 35 0 343 0 0 41 chr11 130172398 130172447 -20611106 + (CA)n Simple_repeat Simple_repeat 1 47 0 220 282 121 16 chr11 130173068 130173192 -20610361 - L2 LINE L2 0 3272 3136 574 286 196 0 chr11 130173286 130173475 -20610078 - MIR SINE MIR -34 228 3 479 329 81 0 chr11 130173625 130173847 -20609706 + MIR SINE MIR 16 255 -7 379 238 89 48 chr11 130174510 130174678 -20608875 + MER5B DNA MER1_type 4 178 0 253 287 10 59 chr11 130174760 130174861 -20608692 - MIR3 SINE MIR -9 199 104 308 317 10 20 chr11 130177304 130177405 -20606148 + MIR SINE MIR 55 154 -108 357 217 13 0 chr11 130177465 130177549 -20606004 + MIR SINE MIR 57 141 -67 1309 255 75 7 chr11 130178378 130178785 -20604768 + L1ME3A LINE L1 5726 6165 -5 206 276 41 81 chr11 130178796 130178919 -20604634 - MIR SINE MIR -15 247 130 396 234 11 21 chr11 130178919 130179190 -20604363 + AluJb SINE Alu 208 302 0 242 260 0 0 chr11 130179786 130179836 -20603717 - L2 LINE L2 -2 3311 3262 2302 106 20 0 chr11 130179885 130180188 -20603365 + AluSx SINE Alu 4 312 0 265 254 26 53 chr11 130180317 130180431 -20603122 + L3 LINE CR1 1142 1252 -325 332 316 94 12 chr11 130180473 130180644 -20602909 + MIR3 SINE MIR 6 190 -18 925 241 12 36 chr11 130181603 130181856 -20601697 - MIR SINE MIR -10 252 6 194 170 0 21 chr11 130181952 130181999 -20601554 + (CA)n Simple_repeat Simple_repeat 2 47 0 600 271 8 84 chr11 130182340 130182591 -20600962 - MIR SINE MIR 0 262 31 221 336 106 0 chr11 130183585 130183698 -20599855 + MIR3 SINE MIR 65 189 -19 444 263 183 9 chr11 130184622 130184835 -20598718 - MIR SINE MIR -7 255 6 229 256 151 0 chr11 130185866 130185952 -20597601 + L2 LINE L2 3141 3239 -33 * 924 233 35 22 chr11 130185946 130186178 -20597375 + MIR SINE MIR 6 240 -22 396 219 132 0 chr11 130186322 130186436 -20597117 - MER5A DNA MER1_type -2 187 59 2249 99 0 0 chr11 130187153 130187506 -20596047 - AluSx SINE Alu 0 312 1 521 286 27 49 chr11 130187506 130187730 -20595823 - MIR SINE MIR -8 254 36 236 240 124 23 chr11 130187813 130187942 -20595611 - MER20B DNA MER1_type -598 185 44 443 256 171 6 chr11 130188268 130188444 -20595109 - MIR3 SINE MIR 0 208 4 * 903 324 73 23 chr11 130188444 130188890 -20594663 + L3 LINE CR1 1097 1566 -11 266 214 14 14 chr11 130189624 130189694 -20593859 - MIR SINE MIR -112 150 81 235 222 0 0 chr11 130189736 130189781 -20593772 + (CA)n Simple_repeat Simple_repeat 2 46 0 337 233 149 7 chr11 130190785 130190904 -20592649 - MIR SINE MIR -45 163 32 271 310 30 0 chr11 130197595 130197695 -20585858 - MIR SINE MIR -49 213 111 306 298 111 12 chr11 130198031 130198202 -20585351 + MIR SINE MIR 31 218 -44 249 83 0 0 chr11 130198241 130198277 -20585276 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 960 127 0 0 chr11 130198277 130198419 -20585134 - AluSg/x SINE Alu -37 273 132 1946 110 15 0 chr11 130198419 130198692 -20584861 - AluSx SINE Alu -25 287 11 260 221 44 0 chr11 130198782 130198850 -20584703 + MIR SINE MIR 74 144 -118 488 264 71 0 chr11 130198947 130199102 -20584451 - MIR SINE MIR -51 211 46 204 353 17 50 chr11 130199187 130199306 -20584247 - MIR SINE MIR -54 208 94 204 348 155 17 chr11 130199871 130200052 -20583501 - L3b LINE CR1 -88 1495 1290 2224 90 17 0 chr11 130200141 130200441 -20583112 - AluSc SINE Alu -4 305 1 235 306 28 0 chr11 130200448 130200520 -20583033 - MIR SINE MIR -108 100 27 289 353 8 17 chr11 130201034 130201153 -20582400 - MIR SINE MIR -61 147 30 1791 49 0 9 chr11 130201538 130201763 -20581790 + L1PA5 LINE L1 5932 6154 0 489 311 25 31 chr11 130201933 130201976 -20581577 - MIR3 SINE MIR -10 198 156 752 157 0 0 chr11 130201976 130202119 -20581434 + FLAM_A SINE Alu 1 143 0 489 311 25 31 chr11 130202119 130202270 -20581283 - MIR3 SINE MIR -52 156 4 393 252 42 8 chr11 130202871 130202990 -20580563 + MIR3 SINE MIR 33 155 -53 306 73 0 0 chr11 130203298 130203339 -20580214 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 285 322 34 25 chr11 130204605 130204723 -20578830 - MIR3 SINE MIR -5 203 85 448 218 54 68 chr11 130204802 130204877 -20578676 - MIR SINE MIR -29 233 159 2155 152 75 5 chr11 130204877 130205252 -20578301 + MER57A LTR ERV1 1 401 -2 448 218 54 68 chr11 130205252 130205323 -20578230 - MIR SINE MIR -103 159 89 403 341 72 55 chr11 130206404 130206765 -20576788 + L3b LINE CR1 1135 1501 -82 363 284 11 21 chr11 130208171 130208300 -20575253 - MIR3 SINE MIR -15 193 67 300 162 221 0 chr11 130208357 130208425 -20575128 - L2 LINE L2 -5 3308 3226 335 252 46 30 chr11 130208545 130208676 -20574877 + MIR SINE MIR 35 167 -95 303 241 24 2 chr11 130209491 130209591 -20573962 + MIR SINE MIR 55 156 -52 337 243 18 63 chr11 130209826 130209937 -20573616 - MIR SINE MIR -87 121 16 231 88 0 0 chr11 130210734 130210768 -20572785 + (TC)n Simple_repeat Simple_repeat 2 35 0 423 223 0 0 chr11 130211149 130211261 -20572292 + (TG)n Simple_repeat Simple_repeat 2 113 0 251 132 0 38 chr11 130211261 130211314 -20572239 + MER4-int LTR ERV1 1111 1161 -5437 1352 162 85 4 chr11 130212687 130212844 -20570709 - AluJo SINE Alu -19 293 150 219 69 0 0 chr11 130212844 130212873 -20570680 + (ATTG)n Simple_repeat Simple_repeat 1 29 0 1352 162 85 4 chr11 130212873 130212986 -20570567 - AluJo SINE Alu -162 150 1 872 215 15 24 chr11 130213550 130213755 -20569798 + L1ME1 LINE L1 5916 6118 -48 715 158 53 7 chr11 130214182 130214334 -20569219 - MER96B DNA MER1_type? -236 181 23 186 246 79 79 chr11 130215582 130215696 -20567857 + L2 LINE L2 3154 3267 -5 338 61 20 0 chr11 130216316 130216365 -20567188 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 745 279 53 13 chr11 130216543 130216769 -20566784 + MIR SINE MIR 21 255 -7 198 354 8 85 chr11 130216805 130216935 -20566618 + MIR3 SINE MIR 58 177 -31 191 382 26 0 chr11 130218695 130218771 -20564782 - L2 LINE L2 -1 3271 3194 269 250 181 17 chr11 130220741 130220857 -20562696 + MIR SINE MIR 94 228 -34 260 280 56 56 chr11 130220951 130221058 -20562495 + Charlie8 DNA MER1_type 1 107 -2310 363 288 50 83 chr11 130221327 130221605 -20561948 - L3 LINE CR1 -159 1418 1150 547 321 52 5 chr11 130222080 130222292 -20561261 + MIR SINE MIR 13 234 -28 361 0 20 20 chr11 130222308 130222358 -20561195 + (CA)n Simple_repeat Simple_repeat 2 51 0 321 222 28 0 chr11 130222470 130222542 -20561011 + L2 LINE L2 3225 3298 -15 3592 212 39 13 chr11 130223646 130224894 -20558659 - L1ME LINE L1 -475 5691 4410 2328 182 19 28 chr11 130224894 130225459 -20558094 - Charlie1 DNA MER1_type -176 2585 2026 5527 182 19 2 chr11 130225459 130227084 -20556469 + L1P4 LINE L1 4126 5777 -389 596 282 209 13 chr11 130227999 130228075 -20555478 + L2 LINE L2 2722 2782 -531 1963 99 20 24 chr11 130228075 130228369 -20555184 - AluSq SINE Alu -20 293 1 596 282 209 13 chr11 130228369 130228797 -20554756 + L2 LINE L2 2782 3313 0 343 254 136 0 chr11 130229422 130229540 -20554013 + MIR SINE MIR 81 214 -48 266 301 126 44 chr11 130231186 130231369 -20552184 - MIR SINE MIR -1 261 64 189 206 111 16 chr11 130231390 130231453 -20552100 - MIR SINE MIR -62 146 78 224 309 23 2 chr11 130232803 130232890 -20550663 + MIR SINE MIR 25 113 -95 2151 121 0 0 chr11 130234009 130234314 -20549239 + AluSq SINE Alu 1 305 -8 248 261 31 0 chr11 130234702 130234767 -20548786 - L2 LINE L2 -6 3307 3241 1844 110 34 12 chr11 130235163 130235489 -20548064 - L1MB4 LINE L1 0 6180 5848 272 304 167 0 chr11 130235494 130235596 -20547957 - MIR SINE MIR -71 137 19 394 215 50 41 chr11 130235712 130235833 -20547720 - MIR3 SINE MIR -22 186 65 468 333 39 6 chr11 130236360 130236540 -20547013 + MIR SINE MIR 7 192 -70 582 285 0 24 chr11 130237887 130238052 -20545501 + MIR3 SINE MIR 19 179 -29 342 305 48 0 chr11 130239663 130239768 -20543785 + MER69 DNA AcHobo 84 193 -1033 871 261 5 5 chr11 130239856 130240055 -20543498 + MER69 DNA AcHobo 360 558 -1968 21 0 0 0 chr11 130240074 130240095 -20543458 + AT_rich Low_complexity Low_complexity 1 21 0 793 146 51 146 chr11 130240095 130240369 -20543184 + MER69 DNA AcHobo 2277 2524 -2 631 320 159 33 chr11 130240964 130241375 -20542178 - L3 LINE CR1 -5 1572 1075 1775 151 34 14 chr11 130241375 130241666 -20541887 + AluJb SINE Alu 3 299 -13 631 320 159 33 chr11 130241666 130241795 -20541758 - L3 LINE CR1 -502 1075 964 293 236 0 110 chr11 130242199 130242326 -20541227 + MER103 DNA DNA 4 116 -50 280 167 0 0 chr11 130242509 130242557 -20540996 - L2 LINE L2 -88 3225 3178 220 272 218 7 chr11 130242591 130242738 -20540815 - MIR3 SINE MIR -7 201 24 194 290 246 0 chr11 130242787 130242856 -20540697 + L2 LINE L2 3182 3267 -5 607 243 75 17 chr11 130243244 130243417 -20540136 - MIR SINE MIR 0 262 80 655 250 36 45 chr11 130243502 130243726 -20539827 - L1MC5 LINE L1 -36 7925 7704 1991 115 0 0 chr11 130244580 130244841 -20538712 - AluSg SINE Alu -49 261 1 352 244 22 11 chr11 130244889 130244979 -20538574 - MIR SINE MIR -109 153 63 237 228 18 0 chr11 130245425 130245482 -20538071 + L2 LINE L2 3256 3313 0 393 290 68 40 chr11 130245588 130245764 -20537789 - MIR SINE MIR -56 206 26 635 187 0 11 chr11 130246543 130246725 -20536828 + (CA)n Simple_repeat Simple_repeat 1 180 0 282 205 0 0 chr11 130246755 130246833 -20536720 + (CA)n Simple_repeat Simple_repeat 1 78 0 745 47 85 0 chr11 130246835 130246941 -20536612 + HERVH LTR ERV1 203 317 -7396 15840 96 33 7 chr11 130246994 130249391 -20534162 + HERVH LTR ERV1 528 2987 -4726 887 135 20 0 chr11 130249385 130249533 -20534020 + HERVH LTR ERV1 3140 3290 -4423 * 890 162 0 7 chr11 130249523 130249671 -20533882 + HERVH LTR ERV1 3492 3638 -4075 * 1189 152 0 1 chr11 130249661 130250022 -20533531 + HERVH LTR ERV1 4744 5149 -2564 1327 139 19 0 chr11 130250023 130250239 -20533314 + HERVH LTR ERV1 5600 5819 -1894 * 2449 76 45 13 chr11 130250237 130250617 -20532936 + HERVH LTR ERV1 7322 7713 0 2521 94 58 25 chr11 130250617 130251051 -20532502 + LTR7 LTR ERV1 1 448 -2 232 316 43 8 chr11 130251287 130251404 -20532149 - L2 LINE L2 -7 3265 3145 233 256 47 23 chr11 130252046 130252132 -20531421 - MIR SINE MIR -87 121 34 195 306 0 0 chr11 130254120 130254182 -20529371 - MER5B DNA MER1_type -2 176 115 192 288 41 27 chr11 130254922 130254995 -20528558 - MER5B DNA MER1_type -70 108 35 460 314 21 16 chr11 130255608 130255796 -20527757 + MIR3 SINE MIR 17 205 -3 1916 139 10 24 chr11 130257762 130258083 -20525470 - AluJo SINE Alu 0 317 1 359 350 63 0 chr11 130260034 130260177 -20523376 - MIR SINE MIR -67 195 44 364 196 28 47 chr11 130262273 130262380 -20521173 - MIR SINE MIR -63 145 41 743 243 43 0 chr11 130262652 130262837 -20520716 + MIR SINE MIR 47 239 -23 226 233 93 23 chr11 130263225 130263311 -20520242 - MIR SINE MIR -77 131 40 678 85 0 0 chr11 130263475 130263569 -20519984 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 718 86 17 0 chr11 130263777 130263893 -20519660 + (TAGA)n Simple_repeat Simple_repeat 2 119 0 271 314 116 8 chr11 130264956 130265077 -20518476 - MIR SINE MIR -66 196 63 2308 91 0 10 chr11 130265195 130265493 -20518060 + AluSq SINE Alu 1 295 -18 357 213 30 188 chr11 130266483 130266562 -20516991 - MIR SINE MIR -79 183 152 2123 124 7 3 chr11 130266562 130266861 -20516692 + AluSx SINE Alu 12 311 -1 357 213 30 188 chr11 130266861 130266978 -20516575 - MIR SINE MIR -110 152 18 277 250 181 17 chr11 130267303 130267419 -20516134 + MIR SINE MIR 94 228 -34 1657 156 93 0 chr11 130267829 130268099 -20515454 - AluJb SINE Alu -17 295 1 274 310 18 9 chr11 130268280 130268393 -20515160 + GA-rich Low_complexity Low_complexity 1 114 0 267 54 0 0 chr11 130269605 130269642 -20513911 + (CA)n Simple_repeat Simple_repeat 2 38 0 451 259 209 5 chr11 130271499 130271700 -20511853 + MIR SINE MIR 8 249 -13 327 241 0 60 chr11 130272820 130272903 -20510650 - MER91B DNA MER1_type -111 79 2 241 260 0 0 chr11 130273190 130273240 -20510313 - L2 LINE L2 -20 3252 3203 239 310 66 26 chr11 130273845 130274008 -20509545 - MIR SINE MIR -59 203 33 2237 108 0 3 chr11 130274513 130274801 -20508752 - AluSx SINE Alu -17 295 9 2064 114 17 7 chr11 130276055 130276366 -20507187 - AluSx SINE Alu 0 312 1 846 166 0 6 chr11 130276409 130276566 -20506987 + L1MB1 LINE L1 6008 6163 -5 1749 214 19 6 chr11 130276566 130276960 -20506593 - L1MB7 LINE L1 -20 6164 5766 541 332 31 20 chr11 130277005 130277297 -20506256 - L1ME3A LINE L1 -219 5934 5640 392 203 112 14 chr11 130277317 130277460 -20506093 + MER112 DNA MER1_type 17 173 -87 2828 282 121 47 chr11 130277549 130278937 -20504616 - L1ME3A LINE L1 -661 5564 4281 5877 30 7 4 chr11 130278937 130279676 -20503877 - L1PA4 LINE L1 0 6155 5415 2828 282 121 47 chr11 130279676 130281176 -20502377 - L1ME3A LINE L1 -1944 4281 2517 3670 127 6 47 chr11 130281246 130281891 -20501662 + LTR31 LTR ERV1 1 619 0 247 298 35 47 chr11 130281992 130282163 -20501390 - L1ME3A LINE L1 -3868 2261 2093 748 174 0 0 chr11 130282236 130282368 -20501185 - FLAM_C SINE Alu 0 133 2 1476 224 147 60 chr11 130282687 130283183 -20500370 + MLT1F LTR MaLR 1 539 -3 1533 299 50 36 chr11 130283239 130283347 -20500206 - L1MEd LINE L1 -4651 1659 1554 2032 265 17 35 chr11 130283347 130283951 -20499602 + MLT1E LTR MaLR 1 593 0 1533 299 50 36 chr11 130283951 130284956 -20498597 - L1MEd LINE L1 -4756 1554 498 1927 141 22 4 chr11 130285069 130285369 -20498184 - AluSx SINE Alu 0 305 1 186 189 0 0 chr11 130285617 130285654 -20497899 + CT-rich Low_complexity Low_complexity 2 38 0 182 274 36 48 chr11 130286044 130286128 -20497425 - L2 LINE L2 -4 3268 3186 349 263 140 40 chr11 130286213 130286441 -20497112 - L2 LINE L2 -131 3141 2891 182 269 0 60 chr11 130287483 130287550 -20496003 + MIR SINE MIR 121 183 -79 256 306 157 27 chr11 130288333 130288480 -20495073 - MIR3 SINE MIR -6 202 37 256 306 157 27 chr11 130289107 130289254 -20494299 - MIR3 SINE MIR -6 202 37 2427 78 3 3 chr11 130289768 130290064 -20493489 - AluSc SINE Alu -13 296 1 2164 101 10 7 chr11 130290982 130291433 -20492120 - AluSx SINE Alu 0 452 1 290 141 31 47 chr11 130291893 130291957 -20491596 - MIR SINE MIR -35 227 165 862 290 31 26 chr11 130293116 130293385 -20490168 - MIR SINE MIR -1 261 2 349 314 58 0 chr11 130293385 130293498 -20490055 + MIR SINE MIR 73 192 -70 284 0 28 0 chr11 130295302 130295338 -20488215 + (ATG)n Simple_repeat Simple_repeat 1 37 0 319 295 73 16 chr11 130295382 130295578 -20487975 - MIR SINE MIR -57 205 2 5867 183 40 20 chr11 130295625 130296951 -20486602 + L1MB3 LINE L1 3804 5188 -995 2193 110 0 0 chr11 130296951 130297241 -20486312 - AluSg SINE Alu -20 290 1 5867 183 40 20 chr11 130297241 130297928 -20485625 + L1MB3 LINE L1 5188 5860 -323 2225 102 17 3 chr11 130298000 130298293 -20485260 + AluSx SINE Alu 1 297 -15 1973 135 24 12 chr11 130298342 130298683 -20484870 + L1MB3 LINE L1 5839 6183 0 403 258 10 0 chr11 130299552 130299649 -20483904 - L2 LINE L2 -10 3303 3206 204 341 110 42 chr11 130299779 130300134 -20483419 + L2 LINE L2 2597 2975 -339 347 211 5 206 chr11 130300150 130300359 -20483194 - MER5B DNA MER1_type -5 173 7 2355 176 45 14 chr11 130300674 130301184 -20482369 + L1MC3 LINE L1 7260 7785 0 228 67 0 0 chr11 130302019 130302049 -20481504 + (GAA)n Simple_repeat Simple_repeat 3 32 0 219 271 187 28 chr11 130303193 130303300 -20480253 + L2 LINE L2 3144 3267 -5 285 318 246 0 chr11 130304057 130304183 -20479370 - MIR SINE MIR -6 256 100 216 269 43 32 chr11 130305654 130305747 -20477806 - MIR3 SINE MIR -2 206 113 206 228 127 25 chr11 130306436 130306515 -20477038 + MIR3 SINE MIR 114 200 -8 243 304 152 0 chr11 130306515 130306607 -20476946 + L2 LINE L2 3167 3272 0 180 174 29 14 chr11 130307539 130307608 -20475945 + (TG)n Simple_repeat Simple_repeat 2 71 0 182 225 50 0 chr11 130309541 130309581 -20473972 + MIR SINE MIR 221 262 0 407 198 44 0 chr11 130309835 130309926 -20473627 + MIR3 SINE MIR 113 207 -1 251 230 86 121 chr11 130310960 130311134 -20472419 - L2 LINE L2 -272 3041 2874 512 243 138 93 chr11 130313501 130313986 -20469567 + MLT1J LTR MaLR 2 508 -3 197 237 34 34 chr11 130316022 130316081 -20467472 + MER5B DNA MER1_type 3 61 -117 613 294 58 44 chr11 130316090 130316328 -20467225 + MLT1H LTR MaLR 14 247 -302 1910 138 3 7 chr11 130316328 130316611 -20466942 + AluSx SINE Alu 1 282 -30 234 0 0 0 chr11 130316618 130316644 -20466909 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 613 294 58 44 chr11 130316644 130316740 -20466813 + MLT1H LTR MaLR 252 361 -188 280 268 39 31 chr11 130316750 130316877 -20466676 + MLT1H LTR MaLR 493 620 -4 232 239 119 15 chr11 130316890 130316957 -20466596 + MER5A DNA MER1_type 78 151 -38 511 260 123 13 chr11 130317205 130317359 -20466194 - MIR3 SINE MIR -8 200 30 332 321 12 43 chr11 130318038 130318200 -20465353 + L3b LINE CR1 1247 1403 -180 611 272 57 19 chr11 130318308 130318536 -20465017 + MIR SINE MIR 3 236 -26 207 266 177 9 chr11 130318834 130318947 -20464606 - MIR SINE MIR -2 260 129 948 262 40 0 chr11 130319248 130319473 -20464080 - MIR SINE MIR -6 256 23 388 196 30 18 chr11 130320147 130320251 -20463302 - MER5A DNA MER1_type 0 189 74 411 277 9 9 chr11 130320576 130320688 -20462865 + L2 LINE L2 2948 3059 -213 249 209 104 134 chr11 130321081 130321282 -20462271 + L1ME4a LINE L1 5625 5819 -302 781 170 0 57 chr11 130321320 130321461 -20462092 - FLAM_C SINE Alu 0 133 1 761 242 0 0 chr11 130321461 130321614 -20461939 + Tigger7 DNA MER2_type 19 171 -2316 1171 105 10 10 chr11 130321618 130321818 -20461735 + Tigger7 DNA MER2_type 2309 2508 -79 239 267 0 13 chr11 130321818 130321893 -20461660 + (TA)n Simple_repeat Simple_repeat 1 74 0 284 70 23 0 chr11 130321906 130321949 -20461604 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 430 213 12 0 chr11 130321960 130322040 -20461513 + Tigger7 DNA MER2_type 2406 2486 -1 341 296 54 16 chr11 130322043 130322229 -20461324 + L1ME4a LINE L1 5834 6026 -95 186 247 32 65 chr11 130322247 130322340 -20461213 + MIR SINE MIR 150 239 -23 784 259 57 9 chr11 130322438 130322666 -20460887 - AluJo SINE Alu -60 252 14 2973 199 49 47 chr11 130323404 130324039 -20459514 + Charlie1a DNA MER1_type 2 642 -2119 2198 115 0 3 chr11 130324039 130324351 -20459202 + AluSx SINE Alu 1 311 0 2973 199 49 47 chr11 130324351 130324443 -20459110 + Charlie1a DNA MER1_type 642 732 -723 30 0 0 0 chr11 130324466 130324496 -20459057 + AT_rich Low_complexity Low_complexity 1 30 0 5673 118 9 2 chr11 130324501 130326505 -20457048 - L1PA16 LINE L1 -9 6157 4124 2381 167 28 37 chr11 130326505 130327068 -20456485 + Charlie1a DNA MER1_type 722 1279 -176 3591 208 42 16 chr11 130327068 130328316 -20455237 + L1ME LINE L1 4410 5691 -475 275 289 148 38 chr11 130328770 130329033 -20454520 - L2 LINE L2 -1094 2220 1929 529 260 148 31 chr11 130329492 130329715 -20453838 - MIR SINE MIR -9 253 5 744 321 49 4 chr11 130330429 130330672 -20452881 + MIR SINE MIR 9 262 0 342 271 172 16 chr11 130331592 130331714 -20451839 + MLT1J2 LTR MaLR 265 405 -45 203 288 214 48 chr11 130332213 130332484 -20451069 + L2 LINE L2 2957 3272 0 28 0 0 0 chr11 130333551 130333579 -20449974 + AT_rich Low_complexity Low_complexity 1 28 0 279 79 0 0 chr11 130334045 130334083 -20449470 + (CA)n Simple_repeat Simple_repeat 1 38 0 274 64 0 64 chr11 130335137 130335184 -20448369 + MER65B LTR ERV1 1 44 -487 895 197 6 11 chr11 130335215 130335398 -20448155 + MER65A LTR ERV1 40 221 -224 232 229 100 21 chr11 130336432 130336537 -20447016 - MIR SINE MIR -68 140 59 1451 208 88 133 chr11 130336581 130336929 -20446624 + MER90 LTR ERV1 2 313 -262 705 181 9 0 chr11 130336929 130337045 -20446508 - FLAM_A SINE Alu -16 117 1 1451 208 88 133 chr11 130337046 130337297 -20446256 + MER90 LTR ERV1 311 575 0 236 255 0 0 chr11 130337420 130337467 -20446086 + (CA)n Simple_repeat Simple_repeat 2 48 0 2579 271 118 63 chr11 130338124 130338835 -20444718 - L1MEd LINE L1 -1273 4856 4186 6505 30 7 4 chr11 130338835 130339574 -20443979 - L1PA4 LINE L1 0 6155 5415 2579 271 118 63 chr11 130339574 130340970 -20442583 - L1MEd LINE L1 -1943 4186 2633 3589 156 6 45 chr11 130341149 130341789 -20441764 + LTR31 LTR ERV1 5 619 0 253 298 35 47 chr11 130341890 130342061 -20441492 - L1MEd LINE L1 -3868 2261 2093 821 174 0 0 chr11 130342134 130342266 -20441287 - FLAM_C SINE Alu 0 133 2 1694 220 147 60 chr11 130342585 130343081 -20440472 + MLT1F LTR MaLR 1 539 -3 1652 272 63 48 chr11 130343137 130343245 -20440308 - L1MEd LINE L1 -4651 1659 1554 2293 267 17 35 chr11 130343245 130343849 -20439704 + MLT1E LTR MaLR 1 593 0 1652 272 63 48 chr11 130343849 130344854 -20438699 - L1MEd LINE L1 -4756 1554 498 1885 141 22 4 chr11 130344967 130345267 -20438286 - AluSx SINE Alu 0 305 1 186 189 0 0 chr11 130345515 130345552 -20438001 + CT-rich Low_complexity Low_complexity 2 38 0 314 263 140 40 chr11 130346111 130346339 -20437214 - L2 LINE L2 -131 3141 2891 227 297 77 22 chr11 130348325 130348416 -20435137 - MIR SINE MIR -76 132 37 755 141 8 8 chr11 130349035 130349156 -20434397 - L1 LINE L1 -1320 4826 4706 6401 180 13 1 chr11 130349158 130351082 -20432471 - L1PA13 LINE L1 -4 6159 4208 191 261 62 31 chr11 130351261 130351326 -20432227 - MER5A DNA MER1_type 0 189 123 489 250 103 4 chr11 130351819 130351983 -20431570 - MIR SINE MIR -44 218 30 227 288 82 0 chr11 130353036 130353109 -20430444 - L2 LINE L2 -36 3236 3158 279 310 0 44 chr11 130353647 130353760 -20429793 + MER94 DNA DNA 2 109 -25 286 229 102 34 chr11 130353800 130353918 -20429635 - MIR SINE MIR -11 251 126 202 328 140 16 chr11 130353943 130354129 -20429424 - L2 LINE L2 -221 3051 2843 678 288 42 78 chr11 130354224 130354582 -20428971 + MLT1K LTR MaLR 189 533 -55 2132 95 10 17 chr11 130354782 130355077 -20428476 + AluSc SINE Alu 3 295 -14 249 232 73 37 chr11 130355362 130355444 -20428109 - MIR SINE MIR -175 87 3 241 250 125 0 chr11 130357154 130357250 -20426303 - MIR SINE MIR -81 127 20 230 128 43 0 chr11 130357631 130357678 -20425875 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 463 195 0 0 chr11 130357833 130357910 -20425643 - MLT2B1 LTR ERVL -266 254 178 23 0 0 0 chr11 130358013 130358036 -20425517 + AT_rich Low_complexity Low_complexity 1 23 0 2015 122 4 0 chr11 130358040 130358319 -20425234 + AluY SINE Alu 6 285 -26 207 0 0 0 chr11 130358322 130358345 -20425208 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2424 229 36 61 chr11 130358367 130359169 -20424384 - L1M4 LINE L1 -1951 4195 3414 985 183 58 14 chr11 130359170 130359378 -20424175 - MSTD LTR MaLR 0 396 180 254 370 76 0 chr11 130359493 130359612 -20423941 - L2 LINE L2 -9 3263 3136 1024 168 34 24 chr11 130359729 130359938 -20423615 + MER20 DNA MER1_type 6 216 -3 4123 43 0 0 chr11 130360350 130360815 -20422738 - L1PA5 LINE L1 -8 6146 5682 187 238 12 62 chr11 130360885 130360965 -20422588 - MIR SINE MIR -73 135 60 359 164 30 0 chr11 130361310 130361377 -20422176 - L1 LINE L1 -875 5271 5203 21 36 0 0 chr11 130361575 130361603 -20421950 + AT_rich Low_complexity Low_complexity 1 28 0 880 295 204 18 chr11 130362360 130362807 -20420746 + L2 LINE L2 2136 2665 -649 372 360 33 0 chr11 130362912 130363065 -20420488 - L2 LINE L2 -595 2719 2562 216 67 0 0 chr11 130363328 130363358 -20420195 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 188 326 56 22 chr11 130364113 130364202 -20419351 - L2 LINE L2 -156 3116 3025 6373 142 52 8 chr11 130364430 130365460 -20418093 - Ricksha_c DNA DNA -721 1325 250 830 174 0 0 chr11 130365464 130365602 -20417951 - Ricksha_c DNA DNA -1905 141 4 1210 222 30 96 chr11 130365970 130366470 -20417083 + L1M4 LINE L1 4824 5290 -856 1213 266 36 116 chr11 130366478 130367200 -20416353 + L1M4b LINE L1 5 668 -6191 1495 165 53 20 chr11 130367200 130367503 -20416050 + L1M4b LINE L1 1122 1434 -5425 394 333 18 68 chr11 130368057 130368279 -20415274 + MIR SINE MIR 23 233 -29 272 231 55 44 chr11 130368493 130368584 -20414969 - MLT1K LTR MaLR -284 304 213 307 150 50 0 chr11 130368695 130368755 -20414798 - L1MA3 LINE L1 0 6305 6243 187 288 0 27 chr11 130369064 130369137 -20414416 - L3 LINE CR1 -584 993 923 1031 320 77 5 chr11 130369342 130369720 -20413833 - MLT1I LTR MaLR -4 405 1 530 342 48 4 chr11 130369728 130369959 -20413594 - L3 LINE CR1 -901 676 436 27 62 0 0 chr11 130370095 130370143 -20413410 + AT_rich Low_complexity Low_complexity 1 48 0 1350 213 7 39 chr11 130370838 130371148 -20412405 - AluJo SINE Alu -12 300 1 2774 130 18 8 chr11 130371855 130372968 -20410585 - L1P LINE L1 -4884 1262 11 1786 96 16 0 chr11 130372975 130373226 -20410327 - L1PA15-16 LINE L1 -4267 2582 2328 1378 198 19 64 chr11 130373360 130373673 -20409880 - MER47B DNA MER2_type -87 331 33 203 333 136 7 chr11 130373915 130374062 -20409491 + L2 LINE L2 2579 2744 -570 1395 239 48 44 chr11 130374748 130375021 -20408532 + L1MEc LINE L1 1587 1864 -4532 1720 219 33 0 chr11 130375021 130375350 -20408203 + MER58B DNA MER1_type 2 341 0 1395 239 48 44 chr11 130375350 130375558 -20407995 + L1MEc LINE L1 1864 2070 -4326 213 349 68 40 chr11 130375764 130376013 -20407540 - L2 LINE L2 -705 2609 2354 243 343 19 9 chr11 130376550 130376658 -20406895 + L2 LINE L2 2929 3037 -235 804 234 119 0 chr11 130376716 130376934 -20406619 + MIR SINE MIR 7 250 -12 207 0 0 0 chr11 130378075 130378098 -20405455 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 283 298 24 0 chr11 130378122 130378206 -20405347 - L3 LINE CR1 -312 1265 1180 21 36 0 0 chr11 130378319 130378347 -20405206 + AT_rich Low_complexity Low_complexity 1 28 0 240 143 0 0 chr11 130378372 130378414 -20405139 + (TA)n Simple_repeat Simple_repeat 1 42 0 713 242 63 31 chr11 130379072 130379469 -20404084 - L1MEc LINE L1 -3706 2509 2154 527 307 32 16 chr11 130380479 130380668 -20402885 - L2 LINE L2 -9 3304 3113 628 99 88 0 chr11 130380677 130380768 -20402785 + AluSg1 SINE Alu 2 100 -209 320 292 62 0 chr11 130381982 130382078 -20401475 - L2 LINE L2 -19 3294 3193 1551 193 39 95 chr11 130382237 130382318 -20401235 + MLT1B LTR MaLR 4 88 -302 1421 231 134 23 chr11 130382318 130382669 -20400884 - MSTD LTR MaLR -2 394 5 1551 193 39 95 chr11 130382669 130382997 -20400556 + MLT1B LTR MaLR 88 390 0 609 196 51 61 chr11 130383034 130383248 -20400305 + L1MC5 LINE L1 7258 7469 -492 5333 161 36 11 chr11 130383442 130384364 -20399189 + Tigger1 DNA MER2_type 1 945 -1473 306 307 23 0 chr11 130434371 130434459 -20349094 - MIR3 SINE MIR -51 157 68 774 278 70 37 chr11 130434519 130434818 -20348735 - L2 LINE L2 -5 3308 3000 206 246 79 79 chr11 130435586 130435700 -20347853 - L2 LINE L2 -5 3267 3154 676 158 53 7 chr11 130436948 130437100 -20346453 + MER96B DNA MER1_type? 23 181 -236 812 215 15 24 chr11 130437527 130437732 -20345821 - L1ME1 LINE L1 -48 6118 5916 1467 160 76 4 chr11 130438296 130438587 -20344966 + AluJo SINE Alu 1 282 -30 220 69 0 0 chr11 130438409 130438617 -20344936 + (CAAT)n Simple_repeat Simple_repeat 1 217 0 391 319 128 31 chr11 130438784 130439104 -20344449 - L3 LINE CR1 -77 1500 1150 460 316 52 5 chr11 130439579 130439791 -20343762 + MIR SINE MIR 13 234 -28 412 17 17 17 chr11 130439807 130439865 -20343688 + (CA)n Simple_repeat Simple_repeat 2 59 0 1982 125 45 0 chr11 130439925 130440089 -20343464 - AluJb SINE Alu -12 300 116 252 0 0 0 chr11 130440089 130440117 -20343436 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1982 125 45 0 chr11 130440117 130440239 -20343314 - AluJb SINE Alu -196 116 1 222 314 116 8 chr11 130441816 130441937 -20341616 - MIR SINE MIR -66 196 63 2276 91 0 10 chr11 130442055 130442353 -20341200 + AluSq SINE Alu 1 295 -18 333 207 30 192 chr11 130443345 130443424 -20340129 - MIR SINE MIR -79 183 153 2098 123 7 3 chr11 130443424 130443724 -20339829 + AluSx SINE Alu 12 312 0 333 207 30 192 chr11 130443724 130443842 -20339711 - MIR SINE MIR -109 153 18 263 241 181 17 chr11 130444167 130444283 -20339270 + MIR SINE MIR 94 228 -34 289 280 56 56 chr11 130444377 130444484 -20339069 + Charlie8 DNA MER1_type 1 107 -2310 389 306 35 6 chr11 130444863 130445036 -20338517 + MIR SINE MIR 15 192 -70 1708 178 20 28 chr11 130445999 130446353 -20337200 - L1MB8 LINE L1 -2 6176 5826 3576 128 66 21 chr11 130446353 130446961 -20336592 + MER39B LTR ERV1 11 645 -8 1383 151 19 35 chr11 130446968 130447226 -20336327 - L1MB8 LINE L1 -338 5840 5587 233 207 35 0 chr11 130447229 130447287 -20336266 - L2 LINE L2 -9 3263 3204 2249 206 82 55 chr11 130447411 130448181 -20335372 - L1MB8 LINE L1 -1509 4637 3847 369 265 254 11 chr11 130448233 130448422 -20335131 - L2 LINE L2 -668 2646 2412 395 301 78 36 chr11 130449075 130449241 -20334312 - MER5B DNA MER1_type 0 178 6 228 175 0 0 chr11 130449247 130449287 -20334266 - MIR3 SINE MIR -49 159 120 476 233 12 0 chr11 130449313 130449399 -20334154 + MER81 DNA DNA 1 87 -27 * 489 153 0 0 chr11 130449393 130449465 -20334088 + MER81 DNA DNA 43 114 0 264 293 103 29 chr11 130449857 130450031 -20333522 + L2 LINE L2 3127 3313 0 426 20 0 0 chr11 130450435 130450486 -20333067 + (CAT)n Simple_repeat Simple_repeat 3 53 0 180 234 43 21 chr11 130450490 130450537 -20333016 - L2 LINE L2 -20 3252 3205 329 128 14 9 chr11 130450632 130450693 -20332860 + Alu SINE Alu 2 45 -255 307 226 13 101 chr11 130451851 130451981 -20331572 - L2 LINE L2 -84 3229 3114 2297 113 6 0 chr11 130451981 130452292 -20331261 + AluSp SINE Alu 1 313 0 307 226 13 101 chr11 130452292 130452320 -20331233 - L2 LINE L2 -199 3114 3085 1573 137 105 0 chr11 130452333 130452581 -20330972 + AluJb SINE Alu 1 274 -38 34 0 0 0 chr11 130452597 130452631 -20330922 + AT_rich Low_complexity Low_complexity 1 34 0 494 165 55 0 chr11 130452659 130452750 -20330803 + L1MC3 LINE L1 7477 7572 -213 1997 97 0 8 chr11 130452750 130453018 -20330535 + AluSx SINE Alu 1 266 -46 25 0 0 0 chr11 130453058 130453083 -20330470 + AT_rich Low_complexity Low_complexity 1 25 0 622 224 42 14 chr11 130453752 130453895 -20329658 - MIR SINE MIR -102 160 14 2456 92 0 0 chr11 130453946 130454249 -20329304 + AluSg1 SINE Alu 1 303 -6 862 192 45 0 chr11 130454376 130454553 -20329000 + MER20 DNA MER1_type 34 218 -1 337 367 25 10 chr11 130455723 130455922 -20327631 + MIR SINE MIR 60 261 -1 182 284 45 11 chr11 130456113 130456201 -20327352 + MIR SINE MIR 34 124 -138 393 212 138 58 chr11 130456273 130456462 -20327091 - Charlie5 DNA MER1_type -49 2563 2360 1186 36 7 0 chr11 130456463 130456601 -20326952 - AluY SINE Alu -20 291 153 1068 191 102 0 chr11 130456841 130457077 -20326476 + MIR SINE MIR 3 262 0 461 299 52 23 chr11 130457714 130457888 -20325665 - MER5A DNA MER1_type -4 185 7 562 260 42 31 chr11 130458159 130458351 -20325202 + MIR SINE MIR 45 238 -24 230 288 50 0 chr11 130458364 130458444 -20325109 - L2 LINE L2 -1 3271 3188 1947 156 7 0 chr11 130458705 130458994 -20324559 + AluSx SINE Alu 1 291 -21 399 231 22 0 chr11 130459040 130459131 -20324422 + L1ME2 LINE L1 6066 6158 -6 534 288 92 18 chr11 130459144 130459373 -20324180 + MIR SINE MIR 4 249 -13 695 161 0 0 chr11 130459549 130459661 -20323892 + FLAM_A SINE Alu 23 134 -8 228 231 139 9 chr11 130459666 130459774 -20323779 + L1ME4a LINE L1 5999 6120 -1 473 259 44 41 chr11 130459989 130460195 -20323358 + L1MEc LINE L1 1310 1519 -4877 2223 118 24 84 chr11 130460195 130460610 -20322943 + MLT1B LTR MaLR 1 390 0 473 259 44 41 chr11 130460610 130460673 -20322880 + L1MEc LINE L1 1519 1580 -4816 5141 135 9 13 chr11 130460673 130461549 -20322004 + L1MA2 LINE L1 4005 4877 -1269 1986 185 38 31 chr11 130461553 130462100 -20321453 - MLT2A2 LTR ERVL 0 554 1 6725 131 20 9 chr11 130462100 130463512 -20320041 + L1MA2 LINE L1 4877 6304 0 322 227 0 0 chr11 130463523 130463598 -20319955 + L1MEc LINE L1 1566 1640 -4756 * 6592 239 52 52 chr11 130463571 130465195 -20318358 + L1MEc LINE L1 10 1632 -4583 2321 41 0 0 chr11 130465195 130465462 -20318091 + AluY SINE Alu 42 308 -3 6592 239 52 52 chr11 130465462 130466066 -20317487 + L1MEc LINE L1 1632 2234 -3981 1883 156 0 19 chr11 130466066 130466380 -20317173 + AluSx SINE Alu 5 312 0 6592 239 52 52 chr11 130466380 130467226 -20316327 + L1MEc LINE L1 2234 3078 -3137 2409 93 0 3 chr11 130467226 130467528 -20316025 + AluSp SINE Alu 3 303 -10 6592 239 52 52 chr11 130467528 130468484 -20315069 + L1MEc LINE L1 3078 4007 -2208 2451 92 0 0 chr11 130468484 130468788 -20314765 - AluY SINE Alu -7 304 1 6592 239 52 52 chr11 130468788 130468885 -20314668 + L1MEc LINE L1 4007 4102 -2113 2191 61 12 91 chr11 130468888 130469218 -20314335 - AluSq SINE Alu -9 304 1 182 233 0 0 chr11 130519691 130519734 -20263819 + L3 LINE CR1 1191 1233 -344 209 272 62 37 chr11 130520152 130520233 -20263320 + MER5B DNA MER1_type 48 130 -48 230 275 64 74 chr11 130520251 130520655 -20262898 + L1MC5 LINE L1 7551 7950 -11 2395 100 0 3 chr11 130520788 130521097 -20262456 + AluSx SINE Alu 1 308 -4 5011 162 32 16 chr11 130521129 130521607 -20261946 - L1MA6 LINE L1 0 6300 5831 2203 116 0 10 chr11 130521607 130521908 -20261645 - AluSx SINE Alu -14 298 1 5011 162 32 16 chr11 130521908 130522925 -20260628 - L1MA6 LINE L1 -469 5831 4782 416 220 137 48 chr11 130524107 130524275 -20259278 - MIR SINE MIR -33 229 47 502 259 35 21 chr11 130524864 130525007 -20258546 + MIR SINE MIR 49 193 -69 385 303 25 34 chr11 130525066 130525185 -20258368 - MIR SINE MIR -143 119 2 412 235 37 0 chr11 130525909 130526027 -20257526 - MIR SINE MIR -62 146 34 1808 103 33 4 chr11 130526513 130526756 -20256797 - AluSq SINE Alu -63 250 1 450 323 57 10 chr11 130526958 130527150 -20256403 + MIR SINE MIR 3 203 -59 * 934 234 87 0 chr11 130527141 130527372 -20256181 - MIR SINE MIR -6 256 6 924 263 70 55 chr11 130527483 130527898 -20255655 - L2 LINE L2 -26 3287 2867 337 283 36 42 chr11 130528086 130528252 -20255301 - MER112 DNA MER1_type -88 172 8 269 309 43 0 chr11 130530493 130530587 -20252966 + MIR SINE MIR 49 146 -62 188 65 0 32 chr11 130531050 130531081 -20252472 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 463 292 95 33 chr11 130531088 130531331 -20252222 + MIR SINE MIR 2 259 -3 480 284 58 19 chr11 130531515 130531670 -20251883 + MIR SINE MIR 75 235 -27 386 361 40 13 chr11 130533538 130533765 -20249788 - L2 LINE L2 -1 3312 3080 1791 177 35 25 chr11 130533780 130534147 -20249406 - MLT1A2 LTR MaLR 0 374 4 1112 270 127 2 chr11 130535226 130535700 -20247853 + L2 LINE L2 2155 2687 -627 227 214 0 0 chr11 130536229 130536271 -20247282 + MIR SINE MIR 112 153 -109 275 236 57 81 chr11 130536340 130536463 -20247090 + L2 LINE L2 3194 3313 0 201 296 182 0 chr11 130536808 130536896 -20246657 - L2 LINE L2 0 3272 3169 252 86 0 0 chr11 130536916 130536951 -20246602 + (CA)n Simple_repeat Simple_repeat 2 36 0 202 246 136 34 chr11 130537143 130537261 -20246292 - MIR3 SINE MIR -25 183 54 2266 113 0 0 chr11 130537274 130537567 -20245986 - AluSc SINE Alu -16 293 1 2162 128 16 0 chr11 130537737 130538043 -20245510 - AluSx SINE Alu -1 311 1 208 246 49 0 chr11 130538897 130538958 -20244595 - L2 LINE L2 -219 3053 2990 268 164 0 36 chr11 130539223 130539278 -20244275 + MIR SINE MIR 87 139 -69 251 264 0 0 chr11 130539539 130539592 -20243961 - L2 LINE L2 -20 3252 3200 22 0 0 0 chr11 130539596 130539618 -20243935 + AT_rich Low_complexity Low_complexity 1 22 0 357 338 45 0 chr11 130539645 130539778 -20243775 - MIR3 SINE MIR -20 188 50 274 355 20 20 chr11 130539849 130540001 -20243552 + MIR SINE MIR 61 212 -50 2076 130 0 0 chr11 130541283 130541584 -20241969 + AluSx SINE Alu 1 301 -11 346 62 0 62 chr11 130544171 130544235 -20239318 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 570 29 0 0 chr11 130544258 130544326 -20239227 + (TGGA)n Simple_repeat Simple_repeat 3 70 0 300 254 161 17 chr11 130544880 130544998 -20238555 + MIR SINE MIR 117 251 -11 620 293 54 37 chr11 130546476 130546718 -20236835 + MIR SINE MIR 13 258 -4 1151 222 118 31 chr11 130547334 130547521 -20236032 - L2 LINE L2 -118 3195 3026 2774 101 0 8 chr11 130547521 130547899 -20235654 - THE1C LTR MaLR 0 375 1 1151 222 118 31 chr11 130547899 130548280 -20235273 - L2 LINE L2 -287 3026 2599 440 253 232 5 chr11 130548285 130548475 -20235078 - L2 LINE L2 -2559 755 523 32 26 0 0 chr11 130548717 130548756 -20234797 + AT_rich Low_complexity Low_complexity 1 39 0 1142 268 77 14 chr11 130549054 130549420 -20234133 + L1MEc LINE L1 37 425 -5971 798 282 146 49 chr11 130549417 130549847 -20233706 - L1M4 LINE L1 -934 5212 4825 * 1843 124 3 11 chr11 130549847 130550129 -20233424 + AluSx SINE Alu 1 280 -32 798 282 146 49 chr11 130550129 130550142 -20233411 - L1M4 LINE L1 -1321 4825 4815 192 40 0 0 chr11 130550142 130550167 -20233386 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 798 282 146 49 chr11 130550167 130550723 -20232830 - L1M4 LINE L1 -1331 4815 4115 555 241 29 17 chr11 130550726 130550900 -20232653 - L1MEc LINE L1 -3117 3012 2837 305 238 47 27 chr11 130551138 130551446 -20232107 - L1MEc LINE L1 -4268 2042 795 2344 202 55 51 chr11 130551451 130551898 -20231655 + L1M4 LINE L1 2276 2729 -3417 2155 85 0 48 chr11 130551898 130552214 -20231339 - AluSc SINE Alu -8 301 1 2344 202 55 51 chr11 130552214 130552454 -20231099 + L1M4 LINE L1 2729 2966 -3180 2195 232 75 102 chr11 130552457 130553222 -20230331 + L1MEc LINE L1 289 1073 -5323 1558 103 9 0 chr11 130553222 130553445 -20230108 - L1PA2 LINE L1 -3 6152 5928 2195 232 75 102 chr11 130553445 130553616 -20229937 + L1MEc LINE L1 1073 1195 -5201 1756 126 68 7 chr11 130553616 130553909 -20229644 + AluSx SINE Alu 1 311 -1 2195 232 75 102 chr11 130553909 130554044 -20229509 + L1MEc LINE L1 1195 1332 -5064 294 29 0 0 chr11 130554321 130554356 -20229197 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2015 119 0 0 chr11 130554359 130554637 -20228916 - AluSx SINE Alu -34 278 1 5717 124 6 4 chr11 130554637 130556097 -20227456 - L1PA16 LINE L1 -11 6155 4713 843 126 0 49 chr11 130556549 130556692 -20226861 + FLAM_C SINE Alu 1 136 -7 189 0 0 0 chr11 130556881 130556902 -20226651 + (T)n Simple_repeat Simple_repeat 1 21 0 2794 3 0 0 chr11 130557054 130557362 -20226191 - AluYb8 SINE Alu -10 308 1 362 283 25 50 chr11 130557404 130557563 -20225990 - MIR SINE MIR -106 156 2 462 205 5 38 chr11 130558804 130558989 -20224564 + GA-rich Low_complexity Low_complexity 2 180 0 1179 143 36 0 chr11 130559216 130559412 -20224141 + AluSx SINE Alu 1 203 -109 1267 200 198 17 chr11 130559446 130560022 -20223531 + LTR50 LTR ERVL 1 786 -9 2140 114 0 0 chr11 130560076 130560366 -20223187 - AluSx SINE Alu -18 294 5 804 224 31 10 chr11 130560385 130560577 -20222976 + HAL1b LINE L1 408 603 -745 1655 258 266 14 chr11 130561079 130561664 -20221889 + L1MC4 LINE L1 6458 6894 -1148 189 0 0 0 chr11 130561664 130561685 -20221868 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 1655 258 266 14 chr11 130561685 130561891 -20221662 + L1MC4 LINE L1 6894 7449 -593 1291 158 55 31 chr11 130561891 130562145 -20221408 + AluJb SINE Alu 1 260 -52 951 235 113 0 chr11 130562149 130562396 -20221157 + L1MC4 LINE L1 7569 7843 -199 1980 134 3 3 chr11 130562661 130562968 -20220585 + AluSx SINE Alu 1 307 -5 493 357 66 8 chr11 130563826 130564021 -20219532 + MIR SINE MIR 2 215 -47 1890 145 0 16 chr11 130564021 130564339 -20219214 + AluSq SINE Alu 1 313 0 493 357 66 8 chr11 130564339 130564387 -20219166 + MIR SINE MIR 215 259 -3 1651 126 74 4 chr11 130564478 130564747 -20218806 + AluJo SINE Alu 7 294 -18 1779 126 8 0 chr11 130564988 130565250 -20218303 - AluSx SINE Alu -15 297 34 520 278 63 16 chr11 130565378 130565569 -20217984 - L2 LINE L2 -8 3305 3106 198 0 0 0 chr11 130565913 130565935 -20217618 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 2062 91 4 0 chr11 130565943 130566218 -20217335 - AluSx SINE Alu -36 276 1 22 56 0 0 chr11 130566393 130566429 -20217124 + AT_rich Low_complexity Low_complexity 1 36 0 2652 57 25 0 chr11 130566817 130567135 -20216418 - LTR17 LTR ERV1 -454 326 1 4478 55 30 31 chr11 130567135 130567739 -20215814 - HERV17 LTR ERV1 0 8626 8024 454 296 39 98 chr11 130568865 130569352 -20214201 - L2 LINE L2 -189 3083 2623 2023 122 0 0 chr11 130569585 130569871 -20213682 + AluJb SINE Alu 1 286 -26 1963 131 20 0 chr11 130569926 130570223 -20213330 + AluSx SINE Alu 1 303 -9 1039 147 0 0 chr11 130570225 130570381 -20213172 + AluSg/x SINE Alu 136 291 -21 1088 291 46 22 chr11 130570397 130571003 -20212550 + L1MB7 LINE L1 1365 2137 -4426 257 292 71 25 chr11 130571088 130571328 -20212225 + L1MB7 LINE L1 2045 2295 -4268 * 6300 209 34 55 chr11 130571304 130571925 -20211628 + L1MB7 LINE L1 2705 3337 -3045 2172 113 0 0 chr11 130571925 130572226 -20211327 + AluSx SINE Alu 1 301 -11 6300 209 34 55 chr11 130572226 130573415 -20210138 + L1MB7 LINE L1 3337 4478 -1904 1784 176 23 39 chr11 130573475 130573695 -20209858 + L1MB7 LINE L1 5987 6198 -222 2168 96 23 0 chr11 130573695 130573997 -20209556 + AluY SINE Alu 1 309 -2 1784 176 23 39 chr11 130573997 130574208 -20209345 + L1MB7 LINE L1 6198 6411 -9 1630 114 110 11 chr11 130574690 130574962 -20208591 + AluSq SINE Alu 5 303 -10 336 48 0 0 chr11 130575493 130575535 -20208018 + (CA)n Simple_repeat Simple_repeat 2 43 0 332 176 59 0 chr11 130575691 130575759 -20207794 - MER116 DNA Mariner 0 80 9 294 311 52 44 chr11 130576090 130576225 -20207328 + MIR SINE MIR 114 249 -13 416 305 28 14 chr11 130576803 130576944 -20206609 + MER5B DNA MER1_type 27 169 -9 288 250 75 0 chr11 130577391 130577471 -20206082 + Charlie7 DNA MER1_type 290 375 -2237 1709 153 43 10 chr11 130578414 130578714 -20204839 + AluSx SINE Alu 1 310 -2 588 148 0 0 chr11 130578714 130578822 -20204731 + (GGAA)n Simple_repeat Simple_repeat 1 108 0 234 0 0 0 chr11 130579506 130579532 -20204021 + (T)n Simple_repeat Simple_repeat 1 26 0 2507 65 0 0 chr11 130579749 130580056 -20203497 - AluSx SINE Alu -5 307 1 421 182 117 26 chr11 130580056 130580210 -20203343 + Charlie7 DNA MER1_type 2436 2603 -9 214 333 72 30 chr11 130580461 130580638 -20202915 + MIR SINE MIR 20 197 -55 788 179 42 6 chr11 130582831 130582999 -20200554 + MER69A DNA AcHobo 1 174 -3 207 276 54 131 chr11 130583114 130583437 -20200116 + L2 LINE L2 2915 3261 -11 1890 108 0 7 chr11 130583437 130583715 -20199838 + AluSx SINE Alu 1 276 -36 351 0 0 0 chr11 130583721 130583760 -20199793 + (CA)n Simple_repeat Simple_repeat 2 40 0 207 276 54 131 chr11 130583760 130583817 -20199736 + L2 LINE L2 3266 3272 0 485 193 156 0 chr11 130584274 130584383 -20199170 + Ricksha DNA DNA 22 147 -1899 4007 148 30 61 chr11 130584386 130584571 -20198982 + Ricksha DNA DNA 2431 2620 -631 317 57 0 38 chr11 130584571 130584624 -20198929 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4007 148 30 61 chr11 130584624 130585211 -20198342 + Ricksha DNA DNA 2620 3177 -74 2030 131 0 3 chr11 130585211 130585509 -20198044 - AluSx SINE Alu -15 297 1 4007 148 30 61 chr11 130585509 130585575 -20197978 + Ricksha DNA DNA 3177 3244 -7 625 322 197 12 chr11 130586665 130587349 -20196204 - L2 LINE L2 -699 2615 1805 235 318 82 0 chr11 130591695 130591780 -20191773 + MIR SINE MIR 123 214 -48 2222 130 0 0 chr11 130592452 130592752 -20190801 + AluSx SINE Alu 1 300 -12 4164 81 0 0 chr11 130593166 130593720 -20189833 + MER41A LTR ERV1 1 554 0 3306 215 92 15 chr11 130593862 130594658 -20188895 + MER21B LTR ERV1 6 862 -1 744 191 0 0 chr11 130594856 130594987 -20188566 - FLAM_A SINE Alu -2 131 1 1741 157 22 41 chr11 130595028 130595346 -20188207 - AluJb SINE Alu 0 312 1 2732 118 57 6 chr11 130595786 130596300 -20187253 + MER51A LTR ERV1 1 634 0 327 341 158 22 chr11 130596487 130596897 -20186656 + L2 LINE L2 2304 2769 -545 312 162 101 61 chr11 130596899 130596998 -20186555 - Charlie7 DNA MER1_type -2 2610 2508 979 152 57 0 chr11 130597089 130597247 -20186306 + AluJb SINE Alu 134 300 -12 553 277 90 35 chr11 130597252 130597541 -20186012 - Charlie7 DNA MER1_type -2018 594 290 2165 135 0 13 chr11 130597641 130597953 -20185600 + 7SLRNA srpRNA srpRNA 2 309 -11 1539 98 15 5 chr11 130597955 130598158 -20185395 + AluSq SINE Alu 1 205 -108 494 171 38 0 chr11 130598158 130598263 -20185290 - MER69A DNA AcHobo -68 109 1 268 252 39 19 chr11 130598416 130598519 -20185034 - Charlie7 DNA MER1_type -2502 110 6 210 323 218 24 chr11 130598744 130598992 -20184561 + L2 LINE L2 2971 3266 -6 201 327 135 0 chr11 130599675 130599779 -20183774 + MIR SINE MIR 118 235 -27 194 274 65 0 chr11 130599950 130600012 -20183541 - L2 LINE L2 -6 3266 3201 605 172 69 14 chr11 130600088 130600233 -20183320 + MSTD LTR MaLR 1 153 -243 1876 111 4 0 chr11 130600265 130600509 -20183044 + AluSq SINE Alu 1 245 -68 2376 98 7 0 chr11 130600655 130600962 -20182591 - AluSq SINE Alu -4 309 1 445 258 38 50 chr11 130601412 130601571 -20181982 + MIR SINE MIR 103 259 -3 209 276 0 17 chr11 130602132 130602190 -20181363 - L3 LINE CR1 -3 1574 1518 325 276 186 26 chr11 130602261 130602417 -20181136 - MER5A DNA MER1_type 0 189 9 1998 130 7 3 chr11 130602674 130602967 -20180586 + AluSx SINE Alu 1 294 -18 238 273 15 0 chr11 130603019 130603085 -20180468 + GA-rich Low_complexity Low_complexity 3 69 0 260 303 63 35 chr11 130603176 130603318 -20180235 + L2 LINE L2 3165 3310 -3 2103 87 10 65 chr11 130603394 130603704 -20179849 - AluSx SINE Alu -19 293 1 621 260 51 17 chr11 130603707 130603884 -20179669 - MIR SINE MIR -65 197 15 287 143 0 0 chr11 130603884 130603933 -20179620 - MER69 DNA AcHobo -3 2523 2475 774 172 8 0 chr11 130604584 130604712 -20178841 - MER69 DNA AcHobo -2395 131 3 260 276 20 20 chr11 130604734 130604873 -20178680 + A-rich Low_complexity Low_complexity 1 139 0 2004 169 0 0 chr11 130604931 130605233 -20178320 + AluSx SINE Alu 1 302 -10 243 254 178 16 chr11 130606001 130606127 -20177426 + MIR SINE MIR 42 200 -62 364 290 72 51 chr11 130606210 130606348 -20177205 + MIR3 SINE MIR 42 182 -26 2116 110 23 19 chr11 130606452 130606762 -20176791 + AluSx SINE Alu 1 311 -1 1180 153 0 0 chr11 130606763 130606940 -20176613 + AluSg/x SINE Alu 132 308 -2 2399 112 0 3 chr11 130608195 130608507 -20175046 + AluSq SINE Alu 1 311 -2 198 71 0 0 chr11 130609751 130609779 -20173774 + (TTCCC)n Simple_repeat Simple_repeat 5 32 0 406 301 89 29 chr11 130610600 130610846 -20172707 - L2 LINE L2 -146 3126 2866 387 187 98 73 chr11 130611452 130611575 -20171978 + L2 LINE L2 3147 3272 0 306 0 0 0 chr11 130612212 130612246 -20171307 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 186 298 21 0 chr11 130612253 130612300 -20171253 - L2 LINE L2 -20 3252 3205 282 218 88 82 chr11 130612660 130612751 -20170802 - MIR SINE MIR -50 212 117 2246 106 0 0 chr11 130612751 130613062 -20170491 + AluSx SINE Alu 1 311 0 282 218 88 82 chr11 130613062 130613116 -20170437 - MIR SINE MIR -145 117 65 22 56 0 0 chr11 130614075 130614111 -20169442 + AT_rich Low_complexity Low_complexity 1 36 0 234 301 55 0 chr11 130614112 130614185 -20169368 + L2 LINE L2 3193 3269 -44 1915 105 70 7 chr11 130614250 130614535 -20169018 + AluSx SINE Alu 1 303 -9 252 347 73 36 chr11 130614535 130614754 -20168799 - MIR SINE MIR -15 247 21 702 280 47 5 chr11 130615169 130615383 -20168170 - MIR SINE MIR -12 250 28 267 322 28 42 chr11 130615574 130615694 -20167859 - MIR SINE MIR -79 183 64 1852 89 0 4 chr11 130615694 130615929 -20167624 - AluSg/x SINE Alu -7 305 72 267 322 28 42 chr11 130615929 130615951 -20167602 - MIR SINE MIR -198 64 43 234 218 0 36 chr11 130616610 130616665 -20166888 + MIR SINE MIR 113 165 -97 245 301 141 8 chr11 130617920 130618088 -20165465 - MIR3 SINE MIR -64 198 5 182 311 162 0 chr11 130618707 130618781 -20164772 + MIR SINE MIR 121 206 -56 190 171 29 0 chr11 130619354 130619389 -20164164 + MIR SINE MIR 117 152 -56 339 276 19 45 chr11 130620247 130620326 -20163227 - L1ME3A LINE L1 -240 5930 5855 2198 93 17 0 chr11 130620326 130620616 -20162937 - AluSx SINE Alu -17 295 1 339 276 19 45 chr11 130620616 130620692 -20162861 - L1ME3A LINE L1 -315 5855 5779 403 298 18 0 chr11 130620749 130620863 -20162690 - L2 LINE L2 0 3313 3198 1794 163 3 7 chr11 130620969 130621252 -20162301 + AluJb SINE Alu 1 282 -30 381 22 0 0 chr11 130621275 130621321 -20162232 + (CA)n Simple_repeat Simple_repeat 1 46 0 194 314 0 0 chr11 130622105 130622156 -20161397 + L2 LINE L2 3255 3305 -8 192 368 23 11 chr11 130622428 130622515 -20161038 - L2 LINE L2 -1 3271 3184 24 32 0 0 chr11 130622520 130622551 -20161002 + AT_rich Low_complexity Low_complexity 1 31 0 4980 76 33 0 chr11 130622654 130623323 -20160230 - LTR8 LTR ERV1 0 691 1 485 310 21 0 chr11 130623380 130623522 -20160031 - MIR SINE MIR -68 194 50 2827 243 39 16 chr11 130624143 130624937 -20158616 - L1ME3 LINE L1 -22 6140 5329 370 319 35 0 chr11 130625593 130625706 -20157847 - L2 LINE L2 -2 3311 3195 187 315 24 31 chr11 130626258 130626385 -20157168 - L2 LINE L2 -554 2760 2635 1680 156 0 29 chr11 130626973 130627248 -20156305 + AluJb SINE Alu 1 267 -45 303 191 0 0 chr11 130627254 130627317 -20156236 + GA-rich Low_complexity Low_complexity 1 63 0 1361 22 0 27 chr11 130627318 130627503 -20156050 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 275 0 29 0 chr11 130627505 130627540 -20156013 + (GGAAA)n Simple_repeat Simple_repeat 3 38 0 1017 244 31 43 chr11 130627582 130627934 -20155619 - L2 LINE L2 0 3313 2966 313 311 29 72 chr11 130628139 130628243 -20155310 + L2 LINE L2 2588 2680 -634 2289 99 3 3 chr11 130628243 130628535 -20155018 - AluSx SINE Alu -14 298 7 313 311 29 72 chr11 130628535 130628639 -20154914 + L2 LINE L2 2680 2787 -527 223 224 69 0 chr11 130628967 130629025 -20154528 - L2 LINE L2 0 3313 3252 487 103 35 0 chr11 130629887 130629974 -20153579 + GA-rich Low_complexity Low_complexity 1 90 0 238 262 122 47 chr11 130630332 130630439 -20153114 + MIR3 SINE MIR 84 198 -10 437 254 42 14 chr11 130630522 130630691 -20152862 + MIR SINE MIR 29 207 -55 246 202 294 9 chr11 130630879 130630988 -20152565 - MIR3 SINE MIR -31 177 38 352 299 54 42 chr11 130631612 130631779 -20151774 + MIR SINE MIR 60 228 -34 1840 163 7 17 chr11 130631955 130632250 -20151303 - AluJo SINE Alu -20 292 1 1464 122 17 4 chr11 130632464 130632701 -20150852 - L1PA11 LINE L1 -2 6172 5933 438 281 20 101 chr11 130632785 130632897 -20150656 - MIR SINE MIR -78 184 93 2314 101 0 3 chr11 130632897 130633195 -20150358 + AluSx SINE Alu 1 297 -15 438 281 20 101 chr11 130633195 130633281 -20150272 - MIR SINE MIR -169 93 2 268 301 183 0 chr11 130633377 130633470 -20150083 - MIR SINE MIR -108 154 45 2170 127 10 0 chr11 130633845 130634153 -20149400 - AluSx SINE Alu -1 311 1 213 304 239 0 chr11 130634154 130634246 -20149307 + L2 LINE L2 3156 3269 -3 432 258 81 0 chr11 130634847 130634971 -20148582 + MER94 DNA DNA 1 134 0 243 133 33 17 chr11 130635318 130635378 -20148175 + CT-rich Low_complexity Low_complexity 4 64 0 321 278 118 7 chr11 130635379 130635523 -20148030 + MIR SINE MIR 20 179 -83 213 288 88 107 chr11 130635834 130636013 -20147540 - MIR SINE MIR -52 210 37 180 0 0 0 chr11 130636245 130636265 -20147288 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 564 193 9 0 chr11 130636275 130636384 -20147169 - MER117 DNA MER1_type -54 143 34 535 208 6 107 chr11 130636899 130636960 -20146593 - MIR3 SINE MIR -3 205 139 2326 98 10 0 chr11 130636960 130637255 -20146298 - AluSx SINE Alu -14 298 1 535 208 6 107 chr11 130637255 130637371 -20146182 - MIR3 SINE MIR -69 139 46 207 286 57 29 chr11 130637593 130637698 -20145855 - L2 LINE L2 -217 3055 2948 357 294 98 37 chr11 130639943 130640106 -20143447 + MIR3 SINE MIR 17 189 -19 180 0 0 0 chr11 130640356 130640376 -20143177 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 284 282 34 26 chr11 130640593 130640710 -20142843 + L2 LINE L2 3155 3272 0 463 169 52 0 chr11 130640721 130640798 -20142755 - Charlie3 DNA MER1_type -8 2702 2622 * 1141 167 26 10 chr11 130640789 130640809 -20142744 - MER1B DNA MER1_type -160 219 201 1598 134 24 102 chr11 130640809 130641144 -20142409 - AluYb8 SINE Alu -9 309 1 1141 167 26 10 chr11 130641144 130641331 -20142222 - MER1B DNA MER1_type -178 201 34 192 77 0 0 chr11 130641984 130642010 -20141543 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 270 0 0 0 chr11 130642850 130642880 -20140673 + (T)n Simple_repeat Simple_repeat 1 30 0 2357 107 0 0 chr11 130643011 130643309 -20140244 - AluSx SINE Alu 0 312 15 192 293 27 0 chr11 130644116 130644191 -20139362 + MIR SINE MIR 61 137 -71 487 282 43 57 chr11 130644337 130644546 -20139007 - L3 LINE CR1 -13 1564 1359 490 211 109 7 chr11 130644609 130644756 -20138797 - MER103 DNA DNA -2 164 3 2061 224 48 37 chr11 130644867 130645429 -20138124 - MER74B LTR ERVL 0 622 55 2270 115 0 10 chr11 130646168 130646473 -20137080 + AluSx SINE Alu 1 302 -10 888 146 14 21 chr11 130646740 130646884 -20136669 - FLAM_C SINE Alu 0 143 1 556 238 24 24 chr11 130647133 130647297 -20136256 + L2 LINE L2 3129 3292 -21 347 195 41 114 chr11 130647298 130647346 -20136207 + MER103 DNA DNA 8 58 -108 2203 105 10 0 chr11 130647346 130647640 -20135913 - AluSx SINE Alu -15 297 1 347 195 41 114 chr11 130647640 130647714 -20135839 + MER103 DNA DNA 58 121 -45 204 40 0 0 chr11 130649774 130649799 -20133754 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 771 259 63 77 chr11 130649989 130650166 -20133387 + L1MEd LINE L1 622 800 -5329 689 271 79 8 chr11 130650166 130650406 -20133147 - MIR SINE MIR -1 261 5 771 259 63 77 chr11 130650406 130650478 -20133075 + L1MEd LINE L1 800 872 -5257 3441 151 91 0 chr11 130650478 130651119 -20132434 - L1MB3 LINE L1 -4 6179 5481 771 259 63 77 chr11 130651119 130651954 -20131599 + L1MEd LINE L1 872 1689 -4440 2089 112 0 0 chr11 130651964 130652271 -20131282 - AluSx SINE Alu 0 324 18 24 32 0 0 chr11 130652276 130652307 -20131246 + AT_rich Low_complexity Low_complexity 1 31 0 327 282 30 113 chr11 130652507 130652808 -20130745 + L1MEd LINE L1 1865 2140 -4170 446 292 35 32 chr11 130652813 130653128 -20130425 + L1MEd LINE L1 2115 2430 -3699 315 255 138 38 chr11 130653158 130653397 -20130156 + L1MC5 LINE L1 6959 7221 -740 2008 147 25 17 chr11 130653398 130653759 -20129794 + MLT1A1 LTR MaLR 1 364 -1 558 243 127 76 chr11 130653974 130654156 -20129397 + L1MC5 LINE L1 7323 7494 -467 2350 67 0 24 chr11 130654156 130654453 -20129100 - AluY SINE Alu -21 290 1 558 243 127 76 chr11 130654453 130654734 -20128819 + L1MC5 LINE L1 7494 7823 -138 2288 99 0 16 chr11 130654734 130655076 -20128477 + AluSc SINE Alu 1 309 0 558 243 127 76 chr11 130655076 130655180 -20128373 + L1MC5 LINE L1 7823 7920 -41 368 257 124 23 chr11 130655205 130655470 -20128083 + L1MEd LINE L1 2458 2749 -3380 1409 172 8 27 chr11 130656244 130656533 -20127020 - AluJb SINE Alu 0 312 55 23 0 0 0 chr11 130656550 130656573 -20126980 + AT_rich Low_complexity Low_complexity 1 23 0 356 213 85 11 chr11 130656583 130656677 -20126876 + L1MEd LINE L1 2846 2946 -3183 471 35 0 0 chr11 130656680 130656737 -20126816 + (CA)n Simple_repeat Simple_repeat 2 58 0 270 0 0 0 chr11 130657542 130657572 -20125981 + (TG)n Simple_repeat Simple_repeat 2 31 0 1733 178 0 0 chr11 130657647 130657917 -20125636 + AluJb SINE Alu 34 303 -9 233 248 220 18 chr11 130657917 130658026 -20125527 - L2 LINE L2 -474 2840 2710 844 194 95 59 chr11 130658030 130658303 -20125250 - L1ME1 LINE L1 -4 6162 5880 2147 119 31 0 chr11 130658316 130658610 -20124943 - AluSq SINE Alu -8 305 3 809 143 14 41 chr11 130658652 130658799 -20124754 - FLAM_C SINE Alu 0 143 1 795 113 28 28 chr11 130658813 130658955 -20124598 - L1MC1 LINE L1 -17 6316 6175 421 263 39 78 chr11 130658963 130659218 -20124335 - L1ME1 LINE L1 -266 5900 5656 1679 246 131 11 chr11 130659224 130659768 -20123785 + L1MEc LINE L1 44 652 -5744 1292 248 102 29 chr11 130659763 130660215 -20123338 - L1MEc LINE L1 -5872 524 40 * 988 276 84 6 chr11 130660217 130660576 -20122977 - L2 LINE L2 -590 2724 2338 2343 98 3 3 chr11 130660785 130661081 -20122472 + AluSx SINE Alu 3 298 -14 592 312 27 21 chr11 130661081 130661267 -20122286 - MIR SINE MIR -56 206 20 280 308 184 50 chr11 130661586 130662184 -20121369 + L2 LINE L2 1447 2124 -1190 242 195 0 0 chr11 130662884 130662925 -20120628 - MER94 DNA DNA -2 132 92 257 300 30 20 chr11 130663881 130663981 -20119572 - MIR SINE MIR -120 142 42 312 222 12 25 chr11 130665467 130665548 -20118005 - MIR SINE MIR -77 185 106 507 239 134 0 chr11 130667886 130668020 -20115533 + MIR SINE MIR 93 244 -18 2527 76 0 0 chr11 130668022 130668323 -20115230 + AluSx SINE Alu 1 301 -11 441 306 156 28 chr11 130668788 130669115 -20114438 - L3 LINE CR1 -641 936 568 249 119 0 0 chr11 130669115 130669157 -20114396 + (TC)n Simple_repeat Simple_repeat 2 43 0 196 302 0 0 chr11 130669206 130669259 -20114294 - L2 LINE L2 -1 3271 3219 215 395 19 6 chr11 130669851 130670013 -20113540 + L2 LINE L2 2895 3058 -214 606 252 26 7 chr11 130670244 130670395 -20113158 + MIR SINE MIR 2 155 -107 832 155 0 0 chr11 130670527 130670656 -20112897 - FLAM_A SINE Alu 0 142 14 275 290 40 10 chr11 130670660 130670760 -20112793 - L3 LINE CR1 -1215 362 260 250 294 18 18 chr11 130671645 130671754 -20111799 + GA-rich Low_complexity Low_complexity 3 111 0 380 265 17 43 chr11 130672389 130672506 -20111047 + MIR SINE MIR 29 142 -120 * 1220 223 202 18 chr11 130672499 130673323 -20110230 + L2 LINE L2 2349 3313 0 192 320 20 20 chr11 130673350 130673450 -20110103 + MIR SINE MIR 157 256 -6 252 282 113 0 chr11 130674195 130674324 -20109229 - MIR SINE MIR -63 145 33 250 336 52 0 chr11 130674875 130674991 -20108562 - L3b LINE CR1 -215 1368 1247 21 0 0 0 chr11 130676607 130676628 -20106925 + GC_rich Low_complexity Low_complexity 1 21 0 190 275 113 0 chr11 130677085 130677165 -20106388 - L3b LINE CR1 -190 1393 1305 438 232 225 7 chr11 130677364 130677502 -20106051 - MIR SINE MIR -5 257 90 678 187 108 0 chr11 130677616 130677782 -20105771 - MER5A DNA MER1_type -3 186 3 340 216 196 0 chr11 130677833 130677935 -20105618 - MIR SINE MIR -98 164 43 * 489 307 97 0 chr11 130677925 130678101 -20105452 - MIR SINE MIR -17 245 53 259 235 0 59 chr11 130680595 130680663 -20102890 + polypyrimidine Low_complexity Low_complexity 3 66 0 360 345 48 0 chr11 130681203 130681348 -20102205 + MIR3 SINE MIR 41 192 -16 234 91 0 0 chr11 130681746 130681779 -20101774 + (CA)n Simple_repeat Simple_repeat 2 34 0 357 289 25 33 chr11 130684835 130684956 -20098597 + MIR SINE MIR 62 181 -81 634 282 64 38 chr11 130684964 130685308 -20098245 + MER115 DNA AcHobo 9 408 -285 458 270 121 11 chr11 130685334 130685508 -20098045 + MER115 DNA AcHobo 500 692 -1 201 288 0 50 chr11 130685509 130685589 -20097964 + MIR SINE MIR 174 249 -13 289 303 103 45 chr11 130685941 130686096 -20097457 - MIR3 SINE MIR -23 185 22 216 246 15 15 chr11 130687138 130687203 -20096350 + C-rich Low_complexity Low_complexity 2 66 0 484 332 23 28 chr11 130689024 130689241 -20094312 + MIR SINE MIR 47 262 0 321 282 272 19 chr11 130689861 130690074 -20093479 - L3 LINE CR1 -34 1543 1277 476 246 8 25 chr11 130691100 130691218 -20092335 + MIR3 SINE MIR 12 127 -81 357 326 87 6 chr11 130691349 130691521 -20092032 + MIR3 SINE MIR 17 202 -6 372 22 0 0 chr11 130692694 130692739 -20090814 + (GA)n Simple_repeat Simple_repeat 1 45 0 410 188 0 0 chr11 130695387 130695451 -20088102 + L2 LINE L2 3201 3264 -8 244 217 43 14 chr11 130695912 130695981 -20087572 + MIR3 SINE MIR 114 184 -24 1885 122 61 34 chr11 130696088 130696384 -20087169 - AluSx SINE Alu -8 304 1 851 264 53 4 chr11 130697923 130698150 -20085403 + MIR SINE MIR 13 250 -12 1924 168 0 0 chr11 130698193 130698478 -20085075 - AluJb SINE Alu -27 285 1 873 154 29 0 chr11 130699533 130699669 -20083884 - AluJb SINE Alu -24 288 149 187 319 29 0 chr11 130699917 130699986 -20083567 + MIR SINE MIR 60 130 -132 311 200 0 0 chr11 130700528 130700588 -20082965 + MER96 DNA MER1_type? 115 174 -1 943 268 155 20 chr11 130700681 130701196 -20082357 - L2 LINE L2 0 3313 2738 278 277 191 7 chr11 130702484 130702625 -20080928 - MIR3 SINE MIR -20 188 22 728 263 93 0 chr11 130702836 130703041 -20080512 - MIR SINE MIR -7 255 32 351 324 34 37 chr11 130703706 130704007 -20079546 + L2 LINE L2 2722 3022 -250 687 195 24 34 chr11 130704046 130704235 -20079318 + MIR SINE MIR 53 233 -29 321 321 160 0 chr11 130704306 130704437 -20079116 + L2 LINE L2 3116 3267 -5 267 31 0 0 chr11 130704524 130704556 -20078997 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 786 201 65 7 chr11 130704558 130704712 -20078841 - AluJo SINE Alu -30 282 120 225 0 0 0 chr11 130704712 130704737 -20078816 + (T)n Simple_repeat Simple_repeat 1 25 0 973 106 8 0 chr11 130704935 130705095 -20078458 - FLAM_C SINE Alu 0 161 1 246 211 141 0 chr11 130705906 130705977 -20077576 + MIR SINE MIR 120 200 -62 343 273 137 22 chr11 130706042 130706181 -20077372 - MIR SINE MIR -82 180 26 253 224 0 17 chr11 130707471 130707529 -20076024 + GA-rich Low_complexity Low_complexity 2 58 0 1069 147 37 0 chr11 130707774 130707937 -20075616 + AluJo SINE Alu 6 174 -138 247 273 148 55 chr11 130708171 130708349 -20075204 + L1MC5 LINE L1 7555 7715 -246 2283 90 0 3 chr11 130708349 130708637 -20074916 + AluSx SINE Alu 1 287 -25 247 273 148 55 chr11 130708637 130708803 -20074750 + L1MC5 LINE L1 7715 7931 -30 189 179 26 0 chr11 130708969 130709008 -20074545 - L2 LINE L2 -11 3302 3263 2133 143 0 6 chr11 130709027 130709341 -20074212 - AluSx SINE Alu 0 312 1 2200 116 0 0 chr11 130709361 130709655 -20073898 - AluSg SINE Alu -12 298 5 1250 102 0 0 chr11 130709693 130709916 -20073637 - AluSg/x SINE Alu 0 367 145 2095 154 0 0 chr11 130709937 130710249 -20073304 - AluSx SINE Alu 0 312 1 2188 145 0 0 chr11 130710256 130710566 -20072987 - AluSx SINE Alu -2 310 1 282 252 48 65 chr11 130710566 130710675 -20072878 - MIR SINE MIR -72 136 43 716 204 81 17 chr11 130712142 130712248 -20071305 + MER5A DNA MER1_type 7 130 -59 2472 77 3 10 chr11 130712248 130712560 -20070993 - AluY SINE Alu -1 310 1 716 204 81 17 chr11 130712560 130712625 -20070928 + MER5A DNA MER1_type 130 189 0 380 356 45 0 chr11 130713070 130713202 -20070351 - L2 LINE L2 -14 3258 3121 1806 144 0 0 chr11 130713642 130713905 -20069648 - AluSx SINE Alu -49 263 1 5416 82 3 8 chr11 130714200 130714412 -20069141 + L1PB2 LINE L1 5396 5608 -543 2283 121 0 3 chr11 130714412 130714717 -20068836 + AluSq SINE Alu 1 304 -9 5416 82 3 8 chr11 130714717 130715264 -20068289 + L1PB2 LINE L1 5608 6151 0 2380 83 0 13 chr11 130715276 130715577 -20067976 - AluSq SINE Alu -16 297 1 180 0 0 0 chr11 130716126 130716146 -20067407 + (TG)n Simple_repeat Simple_repeat 1 20 0 2311 82 4 0 chr11 130716146 130716425 -20067128 - AluSp SINE Alu -33 280 1 180 369 103 41 chr11 130717059 130717254 -20066299 - MIR SINE MIR -35 227 21 2057 129 0 42 chr11 130718062 130718373 -20065180 + AluSx SINE Alu 3 300 -12 1648 164 51 24 chr11 130718608 130718783 -20064770 - AluJo SINE Alu -12 300 112 317 24 24 0 chr11 130718783 130718825 -20064728 + (TTTTA)n Simple_repeat Simple_repeat 4 46 0 1648 164 51 24 chr11 130718825 130718941 -20064612 - AluJo SINE Alu -200 112 1 2792 74 16 5 chr11 130718949 130719326 -20064227 - L1PB1 LINE L1 -2 6149 5769 5379 151 8 26 chr11 130719329 130719496 -20064057 - L1PB1 LINE L1 -197 5954 5786 183 80 0 0 chr11 130719496 130719521 -20064032 + (TA)n Simple_repeat Simple_repeat 1 25 0 5379 151 8 26 chr11 130719521 130719627 -20063926 - L1PB1 LINE L1 -365 5786 5680 2212 129 10 0 chr11 130719627 130719921 -20063632 - AluSg SINE Alu -13 297 1 5379 151 8 26 chr11 130719921 130721057 -20062496 - L1PB1 LINE L1 -471 5680 4525 2202 126 35 6 chr11 130721057 130721399 -20062154 + THE1A LTR MaLR 1 352 -3 2376 99 0 0 chr11 130721399 130721703 -20061850 + AluY SINE Alu 1 304 -7 5379 151 8 26 chr11 130721703 130721715 -20061838 - L1PB1 LINE L1 -1625 4526 4515 12409 81 4 1 chr11 130721715 130723290 -20060263 + THE1A-int LTR MaLR 1 1580 0 2317 108 8 46 chr11 130723290 130723337 -20060216 + THE1A LTR MaLR 1 48 -307 2156 89 41 10 chr11 130723337 130723628 -20059925 - AluY SINE Alu -11 300 1 2317 108 8 46 chr11 130723628 130723949 -20059604 + THE1A LTR MaLR 48 355 0 5379 151 8 26 chr11 130723949 130724345 -20059208 - L1PB1 LINE L1 -1634 4517 4167 186 333 167 0 chr11 130724436 130724532 -20059021 - MER5B DNA MER1_type 0 178 67 818 264 65 4 chr11 130725334 130725565 -20057988 - MIR SINE MIR -14 248 4 2286 100 3 10 chr11 130726670 130726979 -20056574 - AluSx SINE Alu -5 307 1 2093 136 7 0 chr11 130726979 130727274 -20056279 - AluSx SINE Alu -15 297 1 247 167 88 158 chr11 130728466 130728580 -20054973 - MIR SINE MIR -50 212 107 236 266 0 16 chr11 130728700 130728764 -20054789 - L2 LINE L2 -13 3259 3197 21 0 0 0 chr11 130729519 130729540 -20054013 + AT_rich Low_complexity Low_complexity 1 21 0 2024 124 0 34 chr11 130730525 130730847 -20052706 - AluY SINE Alu 0 311 1 375 369 85 41 chr11 130731921 130732774 -20050779 - L2 LINE L2 -5 3267 2374 616 139 26 17 chr11 130733052 130733167 -20050386 + L1MB8 LINE L1 6063 6178 0 825 176 75 0 chr11 130734067 130734226 -20049327 + MER96 DNA MER1_type 1 171 -4 2269 216 128 38 chr11 130734823 130735652 -20047901 + L2 LINE L2 2301 3223 -90 408 307 148 5 chr11 130738073 130738262 -20045291 - MIR SINE MIR 0 262 47 1563 163 10 24 chr11 130738822 130739110 -20044443 + AluJb SINE Alu 25 308 -4 344 238 0 36 chr11 130739285 130739369 -20044184 - L2 LINE L2 -1 3312 3232 1693 149 12 72 chr11 130740365 130740686 -20042867 - AluJb SINE Alu -8 304 3 993 207 0 0 chr11 130740704 130740878 -20042675 - FRAM SINE Alu -2 174 1 226 317 12 12 chr11 130740975 130741057 -20042496 + MIR SINE MIR 9 90 -172 23 33 0 0 chr11 130741137 130741167 -20042386 + AT_rich Low_complexity Low_complexity 1 30 0 1842 179 10 16 chr11 130742082 130742390 -20041163 - AluJb SINE Alu -5 307 2 261 223 57 134 chr11 130742990 130743147 -20040406 - MIR SINE MIR -98 164 20 299 324 72 68 chr11 130745069 130745291 -20038262 - L2 LINE L2 -181 3091 2869 418 276 28 61 chr11 130745776 130745990 -20037563 - L2 LINE L2 -2 3311 3105 1342 161 106 12 chr11 130746237 130746492 -20037061 - AluJo SINE Alu -33 279 1 2483 51 7 0 chr11 130746934 130747227 -20036326 + AluY SINE Alu 1 295 -16 792 165 181 5 chr11 130748517 130748705 -20034848 - MIR SINE MIR -34 228 8 282 303 55 104 chr11 130748783 130748938 -20034615 + L2 LINE L2 2946 3107 -206 2169 115 3 0 chr11 130748938 130749233 -20034320 - AluSp SINE Alu -16 297 2 282 303 55 104 chr11 130749233 130749460 -20034093 + L2 LINE L2 3107 3309 -4 1905 79 11 11 chr11 130749938 130750203 -20033350 + L1M2 LINE L1 5318 5582 -715 2294 134 56 3 chr11 130750203 130750562 -20032991 + MER83B LTR ERV1 1 378 0 11333 128 36 26 chr11 130750734 130752155 -20031398 + MER83B-int LTR ERV1 222 1628 -3252 2108 145 0 79 chr11 130752155 130752521 -20031032 - MER1B DNA MER1_type 0 337 1 11333 128 36 26 chr11 130752521 130752973 -20030580 + MER83B-int LTR ERV1 1628 2219 -2661 1840 165 3 14 chr11 130752973 130753270 -20030283 + AluJb SINE Alu 1 294 -18 11333 128 36 26 chr11 130753270 130753516 -20030037 + MER83B-int LTR ERV1 2219 2461 -2419 5394 110 30 21 chr11 130753502 130753652 -20029901 + MER83B-int LTR ERV1 2803 2950 -1930 * 2240 110 7 0 chr11 130753652 130753951 -20029602 + AluSx SINE Alu 1 301 -11 5394 110 30 21 chr11 130753951 130754647 -20028906 + MER83B-int LTR ERV1 2950 3656 -1224 484 216 43 58 chr11 130755256 130755395 -20028158 + L1MA9 LINE L1 6155 6291 0 414 196 58 48 chr11 130756638 130756730 -20026823 + MER63 DNA MER1_type 701 791 -269 1248 148 55 59 chr11 130756730 130756967 -20026586 - MER46A DNA MER2_type 0 236 1 414 196 58 48 chr11 130756967 130757007 -20026546 + MER63 DNA MER1_type 791 1058 -2 2498 126 21 0 chr11 130757074 130757447 -20026106 + MER57A LTR ERV1 1 381 -22 198 0 0 0 chr11 130757624 130757646 -20025907 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 2398 96 0 0 chr11 130759683 130759985 -20023568 + AluSc SINE Alu 1 302 -7 941 203 61 63 chr11 130761098 130761343 -20022210 + MIR SINE MIR 11 256 -6 6256 245 55 31 chr11 130761372 130763425 -20020128 + L2 LINE L2 1220 3313 0 212 311 78 22 chr11 130763751 130763841 -20019712 + L2 LINE L2 2622 2716 -598 828 269 16 51 chr11 130764400 130764546 -20019007 + MIR SINE MIR 2 137 -125 2020 137 3 16 chr11 130764546 130764853 -20018700 + AluSx SINE Alu 1 303 -9 828 269 16 51 chr11 130764853 130764963 -20018590 + MIR SINE MIR 137 249 -13 265 310 74 108 chr11 130764969 130765292 -20018261 - L2 LINE L2 -6 3266 2955 267 31 0 0 chr11 130765560 130765592 -20017961 + (CA)n Simple_repeat Simple_repeat 1 32 0 1199 266 113 23 chr11 130766514 130767073 -20016480 - L1ME4a LINE L1 -2 6119 5511 330 221 20 0 chr11 130767097 130767251 -20016302 + GA-rich Low_complexity Low_complexity 1 157 0 1462 147 33 0 chr11 130768339 130768550 -20015003 + MER20 DNA MER1_type 2 219 0 318 276 18 98 chr11 130768600 130768689 -20014864 - MIR SINE MIR -56 206 134 2271 129 0 0 chr11 130768689 130768999 -20014554 + AluSx SINE Alu 1 310 -2 318 276 18 98 chr11 130768999 130769072 -20014481 - MIR SINE MIR -128 134 57 506 303 30 0 chr11 130769508 130769640 -20013913 - L2 LINE L2 0 3272 3137 486 0 0 0 chr11 130771567 130771621 -20011932 + (CA)n Simple_repeat Simple_repeat 2 55 0 757 271 52 44 chr11 130772211 130772462 -20011091 + MIR SINE MIR 2 254 -8 276 309 25 0 chr11 130772574 130772655 -20010898 - L3 LINE CR1 -424 1153 1071 246 186 43 29 chr11 130772734 130772804 -20010749 + L2 LINE L2 2906 2976 -296 534 335 16 22 chr11 130772953 130773135 -20010418 + MIR SINE MIR 3 183 -79 188 237 102 0 chr11 130773190 130773249 -20010304 + MIR SINE MIR 198 262 0 376 288 165 57 chr11 130773996 130774324 -20009229 + L2 LINE L2 1235 1526 -1788 2186 113 0 10 chr11 130774324 130774624 -20008929 + AluSx SINE Alu 1 297 -15 376 288 165 57 chr11 130774624 130774841 -20008712 + L2 LINE L2 1526 1839 -1475 623 302 98 65 chr11 130775027 130775632 -20007921 - L2 LINE L2 0 3313 2684 2415 83 0 0 chr11 130775632 130775932 -20007621 + AluY SINE Alu 1 300 -11 623 302 98 65 chr11 130775932 130775973 -20007580 - L2 LINE L2 -629 2684 2646 1202 109 253 18 chr11 130775978 130776199 -20007354 + AluSg1 SINE Alu 25 297 -12 525 278 134 5 chr11 130776280 130776467 -20007086 - L2 LINE L2 -817 2497 2287 872 165 74 28 chr11 130776643 130776819 -20006734 + MER58B DNA MER1_type 158 341 0 235 391 58 0 chr11 130776992 130777148 -20006405 + L2 LINE L2 2105 2269 -1045 227 213 49 0 chr11 130777330 130777391 -20006162 - LTR33 LTR ERVL -2 519 456 1049 172 0 6 chr11 130777413 130777582 -20005971 - AluSg/x SINE Alu 0 312 145 858 222 115 17 chr11 130777700 130777934 -20005619 - LTR33 LTR ERVL -241 280 24 549 262 44 38 chr11 130778019 130778202 -20005351 + MER63A DNA MER1_type 2 185 -25 942 123 0 8 chr11 130778324 130778454 -20005099 - FLAM_C SINE Alu -2 131 3 814 107 0 0 chr11 130778746 130778858 -20004695 - AluSg SINE Alu -9 300 189 * 1133 54 0 0 chr11 130778857 130778987 -20004566 - AluSg SINE Alu -180 130 1 561 88 0 0 chr11 130779708 130779803 -20003750 - AluSg/x SINE Alu 0 309 215 848 250 4 40 chr11 130779814 130780042 -20003511 + L1ME3A LINE L1 5945 6164 -6 1730 143 31 71 chr11 130780587 130780671 -20002882 + L1MB7 LINE L1 5842 5928 -256 1509 146 4 78 chr11 130780671 130780974 -20002579 - AluSx SINE Alu 0 304 23 1730 143 31 71 chr11 130780974 130781239 -20002314 + L1MB7 LINE L1 5928 6178 -6 2366 89 0 13 chr11 130781240 130781556 -20001997 - AluSq SINE Alu -1 312 1 279 0 0 0 chr11 130781750 130781781 -20001772 + (TG)n Simple_repeat Simple_repeat 1 31 0 25 0 0 0 chr11 130782001 130782026 -20001527 + AT_rich Low_complexity Low_complexity 1 25 0 362 272 70 60 chr11 130786322 130786653 -19996900 - L1MC4 LINE L1 -138 7904 7571 1971 149 13 0 chr11 130787030 130787332 -19996221 + AluJb SINE Alu 1 306 -6 21 57 0 0 chr11 130788261 130788296 -19995257 + AT_rich Low_complexity Low_complexity 1 35 0 1603 186 17 0 chr11 130788388 130788679 -19994874 + AluSq SINE Alu 1 296 -17 4279 159 69 21 chr11 130788717 130789259 -19994294 + L1MB7 LINE L1 4907 5422 -762 2096 183 75 8 chr11 130789259 130789658 -19993895 + MSTA LTR MaLR 3 428 0 4279 159 69 21 chr11 130789658 130790309 -19993244 + L1MB7 LINE L1 5422 6165 -19 1063 151 93 0 chr11 130791038 130791210 -19992343 + MER5A DNA MER1_type 2 189 0 263 191 248 29 chr11 130791310 130791415 -19992138 - L2 LINE L2 -2 3311 3184 198 222 0 44 chr11 130791561 130791606 -19991947 - MIR3 SINE MIR -21 187 145 268 209 0 0 chr11 130791783 130791826 -19991727 - MIR3 SINE MIR -53 155 113 461 271 181 9 chr11 130791974 130792184 -19991369 + MIR SINE MIR 15 260 -2 310 217 325 0 chr11 130792209 130792329 -19991224 - MIR SINE MIR -56 206 48 586 302 78 33 chr11 130792409 130792654 -19990899 + MIR SINE MIR 1 256 -6 389 253 10 10 chr11 130792662 130792761 -19990792 + MIR SINE MIR 153 251 -11 358 304 0 11 chr11 130795609 130795701 -19987852 - MIR SINE MIR -115 147 57 216 0 0 0 chr11 130798723 130798747 -19984806 + (T)n Simple_repeat Simple_repeat 1 24 0 693 252 60 18 chr11 130798781 130798999 -19984554 + MIR SINE MIR 33 259 -3 2075 211 83 32 chr11 130799022 130799591 -19983962 + L1ME2 LINE L1 5567 6164 0 390 121 0 0 chr11 130799699 130799765 -19983788 + (TGGA)n Simple_repeat Simple_repeat 4 69 0 324 260 58 0 chr11 130799772 130799876 -19983677 + L1MC4 LINE L1 7932 8041 -1 401 289 72 26 chr11 130800039 130800191 -19983362 - MIR SINE MIR 0 262 104 257 344 116 31 chr11 130800186 130800410 -19983143 - L2 LINE L2 0 3272 3030 * 317 269 11 21 chr11 130800495 130800588 -19982965 - L2 LINE L2 0 3313 3222 790 213 57 25 chr11 130800589 130800833 -19982720 - L2 LINE L2 -253 3060 2809 5399 151 9 18 chr11 130800865 130801855 -19981698 + L1MB3 LINE L1 5198 6174 -9 293 221 15 0 chr11 130801868 130801936 -19981617 - L2 LINE L2 -569 2745 2677 399 274 118 0 chr11 130801941 130802076 -19981477 + MIR SINE MIR 112 262 0 536 362 56 25 chr11 130802153 130802705 -19980848 - L2 LINE L2 -351 2963 2395 1175 151 142 5 chr11 130802766 130802984 -19980569 + LTR54B LTR ERV1 1 248 -250 195 42 0 0 chr11 130802988 130803012 -19980541 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2318 110 3 0 chr11 130803031 130803340 -19980213 - AluSp SINE Alu -3 310 1 261 0 0 0 chr11 130803352 130803381 -19980172 + (TG)n Simple_repeat Simple_repeat 2 30 0 2150 121 10 0 chr11 130803381 130803668 -19979885 - AluSq SINE Alu -20 293 1 905 203 0 0 chr11 130803723 130803886 -19979667 + FRAM SINE Alu 1 163 -13 1219 119 5 0 chr11 130803893 130804078 -19979475 + LTR54 LTR ERV1 325 510 0 1883 110 0 0 chr11 130804419 130804665 -19978888 + AluSc SINE Alu 45 290 -19 212 308 179 26 chr11 130804681 130804915 -19978638 - L2 LINE L2 -1340 1974 1705 369 0 0 0 chr11 130805246 130805287 -19978266 + (TG)n Simple_repeat Simple_repeat 1 41 0 192 307 57 11 chr11 130805466 130805554 -19977999 - MIR SINE MIR -84 124 33 219 319 95 0 chr11 130805881 130805997 -19977556 - L2 LINE L2 -9 3304 3178 2027 128 17 0 chr11 130806253 130806550 -19977003 - AluJo SINE Alu -8 304 3 481 281 29 0 chr11 130806572 130806711 -19976842 - MIR SINE MIR -74 188 46 270 154 11 165 chr11 130807622 130807713 -19975840 + MER103 DNA DNA 23 99 -67 356 248 106 9 chr11 130807781 130807894 -19975659 + MER5C DNA MER1_type 1 124 -200 601 246 28 102 chr11 130808381 130808542 -19975011 - MARNA DNA Mariner -60 526 393 1949 132 0 35 chr11 130808542 130808830 -19974723 - AluSx SINE Alu -34 278 1 601 246 28 102 chr11 130808830 130808952 -19974601 - MARNA DNA Mariner -193 393 264 2305 99 0 3 chr11 130809046 130809339 -19974214 + AluSc SINE Alu 1 292 -17 578 286 114 54 chr11 130809603 130809883 -19973670 + L2 LINE L2 2976 3272 0 216 304 69 78 chr11 130810498 130810702 -19972851 - MIR SINE MIR -29 233 32 23 0 0 0 chr11 130810735 130810758 -19972795 + AT_rich Low_complexity Low_complexity 1 23 0 1709 226 104 85 chr11 130810760 130810943 -19972610 - L1MC5 LINE L1 -36 7925 7747 1943 169 55 10 chr11 130810943 130811328 -19972225 - MER93a LTR ERV1 0 402 1 1709 226 104 85 chr11 130811328 130811347 -19972206 - L1MC5 LINE L1 -214 7747 7730 1228 177 147 15 chr11 130811347 130811612 -19971941 - AluJo SINE Alu -2 300 1 1709 226 104 85 chr11 130811612 130811978 -19971575 - L1MC5 LINE L1 -231 7730 7372 668 224 112 0 chr11 130811978 130812148 -19971405 - MER5A DNA MER1_type 0 189 1 1709 226 104 85 chr11 130812148 130812459 -19971094 - L1MC5 LINE L1 -589 7372 7022 2501 72 0 0 chr11 130812459 130812766 -19970787 + AluY SINE Alu 1 307 -4 1709 226 104 85 chr11 130812766 130812834 -19970719 - L1MC5 LINE L1 -939 7022 6957 917 119 62 12 chr11 130812871 130813031 -19970522 + Tigger1 DNA MER2_type 331 498 -1920 328 181 76 6 chr11 130813034 130813123 -19970430 - L1MC4a LINE L1 -873 6935 6865 756 188 21 17 chr11 130813896 130814060 -19969493 - L1MC5 LINE L1 -1130 6865 6672 6691 119 21 0 chr11 130814098 130815058 -19968495 + Tigger1 DNA MER2_type 2 981 -1437 2065 135 3 13 chr11 130815058 130815369 -19968184 + AluJo SINE Alu 1 308 -4 854 215 0 0 chr11 130815379 130815528 -19968025 + FRAM SINE Alu 1 148 -28 2290 101 0 36 chr11 130815528 130815834 -19967719 - AluSx SINE Alu -17 295 1 9627 105 13 29 chr11 130815861 130816149 -19967404 + Tigger1 DNA MER2_type 974 1265 -1153 2580 77 0 0 chr11 130816149 130816460 -19967093 - AluY SINE Alu 0 311 1 9627 105 13 29 chr11 130816460 130817416 -19966137 + Tigger1 DNA MER2_type 1265 2194 -224 1786 141 10 42 chr11 130817416 130817722 -19965831 - AluJb SINE Alu -14 298 3 9627 105 13 29 chr11 130817722 130817940 -19965613 + Tigger1 DNA MER2_type 2194 2414 -4 348 252 121 73 chr11 130818091 130818297 -19965256 + HAL1 LINE L1 1 216 -2291 * 2489 286 36 48 chr11 130818290 130819076 -19964477 + L1ME3A LINE L1 3589 4382 -1764 2118 113 10 3 chr11 130819076 130819368 -19964185 - AluSx SINE Alu -18 294 1 2489 286 36 48 chr11 130819368 130819511 -19964042 + L1ME3A LINE L1 4382 4525 -1621 1864 169 0 3 chr11 130819511 130819801 -19963752 + AluJb SINE Alu 1 289 -23 2489 286 36 48 chr11 130819801 130820296 -19963257 + L1ME3A LINE L1 4525 4998 -1148 522 307 87 43 chr11 130820398 130820622 -19962931 + L1ME3A LINE L1 5474 5687 -464 2756 107 40 24 chr11 130820628 130820863 -19962690 - MSTA LTR MaLR 0 428 181 2389 80 17 0 chr11 130820863 130821163 -19962390 - AluSx SINE Alu -7 305 1 2756 107 40 24 chr11 130821163 130821348 -19962205 - MSTA LTR MaLR -247 181 1 879 127 50 28 chr11 130821348 130821522 -19962031 + L1MB2 LINE L1 5991 6171 0 522 307 87 43 chr11 130821522 130821551 -19962002 + L1ME3A LINE L1 5687 5738 -413 1993 225 99 7 chr11 130821846 130822540 -19961013 + MER20B DNA MER1_type 1 777 -6 1748 170 7 10 chr11 130822795 130823083 -19960470 + AluJo SINE Alu 1 287 -25 336 294 191 5 chr11 130823155 130823359 -19960194 - L1ME4a LINE L1 -1 6120 5879 379 223 62 0 chr11 130823475 130823605 -19959948 + L2 LINE L2 1690 1827 -1487 1454 110 177 4 chr11 130823666 130823920 -19959633 + AluJo SINE Alu 1 298 -4 1040 205 23 0 chr11 130824052 130824267 -19959286 - L1ME1 LINE L1 -1 6165 5946 775 176 7 7 chr11 130824287 130824423 -19959130 + AluJb SINE Alu 1 136 -176 2893 193 41 44 chr11 130824447 130825632 -19957921 - L1ME1 LINE L1 -223 5941 4771 514 155 60 0 chr11 130825631 130825747 -19957806 + L1M4 LINE L1 2866 2988 -3158 * 275 243 19 28 chr11 130825745 130825852 -19957701 + L1ME3A LINE L1 5840 5945 -225 * 1480 244 62 30 chr11 130825879 130826318 -19957235 + LTR16A1 LTR ERVL 1 453 -4 1493 281 95 20 chr11 130826322 130827441 -19956112 + HERV16 LTR ERVL 1 1448 -3758 2280 104 31 25 chr11 130827441 130827604 -19955949 - L1MA1 LINE L1 0 6302 6141 2188 115 3 10 chr11 130827604 130827935 -19955618 - AluSx SINE Alu 0 312 1 2280 104 31 25 chr11 130827935 130828127 -19955426 - L1MA1 LINE L1 -161 6141 5945 1493 281 95 20 chr11 130828127 130828364 -19955189 + HERV16 LTR ERVL 1448 1666 -3540 610 130 0 0 chr11 130828366 130828458 -19955095 + MER53 DNA DNA 4 95 -94 3524 303 41 27 chr11 130828542 130829511 -19954042 + HERV16 LTR ERVL 1709 2663 -3101 2337 105 0 10 chr11 130829511 130829824 -19953729 - AluSp SINE Alu -3 310 1 3524 303 41 27 chr11 130829824 130830669 -19952884 + HERV16 LTR ERVL 2663 3495 -2269 1988 146 3 3 chr11 130830669 130830977 -19952576 + AluSx SINE Alu 3 310 -2 3524 303 41 27 chr11 130830977 130832167 -19951386 + HERV16 LTR ERVL 3495 4973 -791 536 266 126 56 chr11 130832645 130833059 -19950494 + LTR16A LTR ERVL 6 441 -9 291 230 121 69 chr11 130833062 130833236 -19950317 + HAL1 LINE L1 2311 2493 -14 1934 156 3 0 chr11 130833261 130833550 -19950003 + AluSq SINE Alu 1 290 -23 1767 153 7 7 chr11 130833709 130833984 -19949569 - AluJb SINE Alu -4 308 34 401 295 62 0 chr11 130834061 130834190 -19949363 + L2 LINE L2 2915 3051 -221 990 177 6 0 chr11 130834290 130834448 -19949105 - FAM SINE Alu -21 164 6 200 326 90 0 chr11 130834511 130834600 -19948953 + L2 LINE L2 3176 3272 0 609 200 40 46 chr11 130834624 130834799 -19948754 + MIR SINE MIR 77 250 -12 346 120 0 0 chr11 130835132 130835182 -19948371 + MADE1 DNA Mariner 30 79 -1 297 327 35 18 chr11 130836359 130836472 -19947081 - MIR SINE MIR -116 146 32 308 294 163 20 chr11 130836602 130836755 -19946798 - MER5A DNA MER1_type -6 183 9 1822 147 4 0 chr11 130836867 130837125 -19946428 + AluJb SINE Alu 1 259 -53 402 21 0 0 chr11 130837134 130837181 -19946372 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2201 116 7 0 chr11 130838540 130838834 -19944719 + AluSx SINE Alu 1 296 -16 393 119 0 0 chr11 130839390 130839449 -19944104 + L2 LINE L2 3255 3313 0 221 355 16 79 chr11 130839478 130839667 -19943886 - L2 LINE L2 -96 3176 3000 713 260 46 9 chr11 130839714 130839933 -19943620 + MIR SINE MIR 4 230 -32 2277 99 0 0 chr11 130839947 130840255 -19943298 + AluSx SINE Alu 1 308 0 271 294 33 0 chr11 130840305 130840397 -19943156 - MIR SINE MIR -1 261 167 739 228 0 43 chr11 130840490 130840674 -19942879 + FRAM SINE Alu 1 176 0 3503 85 8 6 chr11 130840769 130841242 -19942311 - L1PA13 LINE L1 0 6163 5690 31 0 0 0 chr11 130841450 130841481 -19942072 + AT_rich Low_complexity Low_complexity 1 31 0 684 244 101 10 chr11 130841659 130841868 -19941685 - MIR SINE MIR -14 248 21 626 286 11 45 chr11 130843932 130844201 -19939352 - MIR SINE MIR 0 262 3 38 39 0 0 chr11 130845504 130845556 -19937997 + AT_rich Low_complexity Low_complexity 1 52 0 447 19 0 0 chr11 130845602 130845654 -19937899 + (CA)n Simple_repeat Simple_repeat 2 53 0 236 293 70 20 chr11 130845887 130846040 -19937513 - MIR3 SINE MIR -54 154 30 263 255 14 21 chr11 130847009 130847150 -19936403 + GA-rich Low_complexity Low_complexity 2 141 0 620 262 48 29 chr11 130847941 130848151 -19935402 - MIR SINE MIR 0 262 49 1511 69 0 15 chr11 130848212 130848414 -19935139 + L1PA8 LINE L1 5972 6170 -2 2327 108 0 3 chr11 130848430 130848736 -19934817 + AluSg SINE Alu 2 306 -4 181 336 122 28 chr11 130848780 130848887 -19934666 - L2 LINE L2 0 3313 3197 2136 134 0 13 chr11 130849077 130849384 -19934169 + AluSg SINE Alu 1 303 -7 304 382 30 0 chr11 130849492 130849691 -19933862 - MIR SINE MIR -20 242 38 204 125 0 0 chr11 130851220 130851252 -19932301 + (T)n Simple_repeat Simple_repeat 1 32 0 648 240 168 57 chr11 130851254 130851587 -19931966 - MER57A LTR ERV1 -31 372 3 392 271 23 48 chr11 130851589 130851855 -19931698 - MER57-int LTR ERV1 0 7537 6885 1576 129 0 0 chr11 130851863 130852073 -19931480 - AluSg/x SINE Alu -25 285 76 425 133 0 0 chr11 130852173 130852233 -19931320 - AluJ/FLAM SINE Alu -251 61 2 466 264 90 0 chr11 130852235 130852379 -19931174 - L1MC/D LINE L1 -2247 5561 5405 2311 121 0 3 chr11 130852388 130852695 -19930858 + AluSq SINE Alu 1 306 -7 336 288 61 43 chr11 130852745 130853148 -19930405 - L1MC/D LINE L1 -840 5306 4902 256 294 47 0 chr11 130853194 130853279 -19930274 + L2 LINE L2 3189 3277 -36 4060 168 27 21 chr11 130853306 130853347 -19930206 - L1MB4 LINE L1 -8 6172 6133 2182 130 0 7 chr11 130853347 130853648 -19929905 - AluSx SINE Alu -13 299 1 4060 168 27 21 chr11 130853648 130854411 -19929142 - L1MB4 LINE L1 -47 6133 5363 1792 128 81 34 chr11 130854411 130854732 -19928821 - MER2 DNA MER2_type 0 345 10 666 208 50 19 chr11 130854753 130854912 -19928641 - L1MB4 LINE L1 -782 5364 5201 523 110 0 12 chr11 130854968 130855050 -19928503 - AluSc SINE Alu -227 82 2 227 214 107 0 chr11 130855063 130855119 -19928434 - MIR SINE MIR -81 181 120 25 83 0 0 chr11 130856504 130856564 -19926989 + AT_rich Low_complexity Low_complexity 1 60 0 213 121 0 0 chr11 130856976 130857009 -19926544 + (TG)n Simple_repeat Simple_repeat 2 34 0 1723 100 52 87 chr11 130857010 130857320 -19926233 - AluSx SINE Alu -12 300 2 180 0 0 0 chr11 130858124 130858144 -19925409 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1995 116 0 14 chr11 130858148 130858425 -19925128 - AluSg SINE Alu -37 273 1 696 282 64 43 chr11 130858520 130858933 -19924620 - MLT1K LTR MaLR 0 588 110 1047 92 0 0 chr11 130859261 130859392 -19924161 + AluSq/x SINE Alu 1 131 -181 21 0 0 0 chr11 130859549 130859570 -19923983 + AT_rich Low_complexity Low_complexity 1 21 0 2218 106 3 26 chr11 130859605 130859916 -19923637 - AluSx SINE Alu -8 304 1 23 33 0 0 chr11 130862044 130862074 -19921479 + AT_rich Low_complexity Low_complexity 1 30 0 1050 96 0 0 chr11 130862785 130862920 -19920633 + AluSq/x SINE Alu 1 135 -177 2242 97 14 0 chr11 130862920 130863209 -19920344 + AluSx SINE Alu 1 293 -19 680 280 94 56 chr11 130863243 130863517 -19920036 + L1MC4a LINE L1 5288 5550 -571 2109 72 79 7 chr11 130863517 130863795 -19919758 - AluSc SINE Alu -10 299 2 680 280 94 56 chr11 130863795 130864123 -19919430 + L1MC4a LINE L1 5550 5824 -297 2357 97 3 0 chr11 130865810 130866109 -19917444 + AluY SINE Alu 1 300 -11 2286 147 44 42 chr11 130866302 130866342 -19917211 - MSTB2 LTR MaLR 0 457 419 1682 172 20 14 chr11 130866342 130866638 -19916915 + AluJo SINE Alu 1 298 -14 2286 147 44 42 chr11 130866638 130867053 -19916500 - MSTB2 LTR MaLR -38 419 1 214 288 17 0 chr11 130867250 130867309 -19916244 - L2 LINE L2 -7 3306 3247 2213 99 18 0 chr11 130867977 130868259 -19915294 + AluSx SINE Alu 1 287 -25 1083 159 0 6 chr11 130868826 130869002 -19914551 + FAM SINE Alu 1 175 0 1822 161 0 23 chr11 130869827 130870126 -19913427 + AluJb SINE Alu 3 294 -18 1008 211 29 10 chr11 130870462 130870670 -19912883 + MER58A DNA MER1_type 9 220 -4 2363 87 0 7 chr11 130871359 130871659 -19911894 - AluSc SINE Alu -11 298 1 409 358 113 20 chr11 130871782 130872128 -19911425 - L2 LINE L2 -68 3204 2827 378 186 65 65 chr11 130872146 130872270 -19911283 - L1ME4a LINE L1 -45 6076 5953 1536 183 3 30 chr11 130872769 130873069 -19910484 + AluJo SINE Alu 1 292 -20 2009 130 3 3 chr11 130873227 130873512 -19910041 - AluSq SINE Alu -28 285 1 2254 110 0 3 chr11 130873634 130873934 -19909619 + AluJb SINE Alu 1 299 -13 2234 96 0 19 chr11 130873970 130874282 -19909271 + AluSc SINE Alu 1 306 -3 519 17 0 0 chr11 130876121 130876181 -19907372 + (TG)n Simple_repeat Simple_repeat 2 61 0 1256 248 91 64 chr11 130876244 130876305 -19907248 - MLT1F LTR MaLR 0 542 484 1874 173 10 0 chr11 130876305 130876594 -19906959 + AluJo SINE Alu 1 292 -20 1256 248 91 64 chr11 130876594 130877060 -19906493 - MLT1F LTR MaLR -58 484 1 201 302 0 0 chr11 130878874 130878927 -19904626 - MIR SINE MIR -6 256 204 29 0 0 0 chr11 130878988 130879017 -19904536 + AT_rich Low_complexity Low_complexity 1 29 0 2133 137 0 0 chr11 130879316 130879616 -19903937 + AluSq SINE Alu 1 300 -13 1945 199 87 33 chr11 130879617 130879716 -19903837 + L1M4 LINE L1 2483 2575 -3571 1908 191 21 0 chr11 130879716 130880051 -19903502 - MER2 DNA MER2_type 0 344 3 1945 199 87 33 chr11 130880051 130880276 -19903277 + L1M4 LINE L1 2575 2787 -3359 2041 259 49 25 chr11 130880276 130880885 -19902668 + MLT1E2 LTR MaLR 3 626 0 1945 199 87 33 chr11 130880885 130881158 -19902395 + L1M4 LINE L1 2787 3113 -3033 186 43 0 0 chr11 130881162 130881185 -19902368 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2942 99 30 0 chr11 130881196 130881631 -19901922 + L1PA13 LINE L1 5709 6156 -7 370 196 34 155 chr11 130881703 130881988 -19901565 + L1M4 LINE L1 3095 3344 -2802 1898 149 10 0 chr11 130881988 130882290 -19901263 + AluSx SINE Alu 1 305 -7 1482 136 97 4 chr11 130882300 130882557 -19900996 - MLT1A1 LTR MaLR 0 365 85 285 167 0 0 chr11 130882565 130882643 -19900910 + T-rich Low_complexity Low_complexity 1 78 0 4335 29 0 4 chr11 130882644 130883120 -19900433 - SVA Other Other -2 1384 911 1821 134 39 11 chr11 130883236 130883519 -19900034 + AluJb SINE Alu 3 293 -19 1507 112 86 0 chr11 130883536 130883804 -19899749 + L1MA4 LINE L1 6003 6293 -7 1824 147 7 20 chr11 130883904 130884197 -19899356 + AluJo SINE Alu 20 308 -4 288 0 0 0 chr11 130884202 130884234 -19899319 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 295 70 0 0 chr11 130884234 130884277 -19899276 + AluY SINE Alu 173 215 -86 2224 117 0 0 chr11 130884398 130884696 -19898857 + AluSx SINE Alu 1 298 -14 394 215 31 32 chr11 130885159 130885321 -19898232 + MIR SINE MIR 6 160 -62 1314 105 12 0 chr11 130885719 130885891 -19897662 + AluSx SINE Alu 1 174 -138 21 0 0 0 chr11 130887780 130887801 -19895752 + AT_rich Low_complexity Low_complexity 1 21 0 890 227 87 4 chr11 130888332 130888561 -19894992 - MIR SINE MIR 0 262 15 2712 32 0 25 chr11 130888701 130889016 -19894537 - AluY SINE Alu -4 307 1 2214 78 7 42 chr11 130889016 130889322 -19894231 - AluSp SINE Alu -18 295 1 571 240 86 11 chr11 130890407 130890582 -19892971 - MIR SINE MIR 0 262 75 403 167 0 0 chr11 130890587 130890647 -19892906 + AluJ/FLAM SINE Alu 2 61 -251 1269 40 9 42 chr11 130890748 130891097 -19892456 - SVA Other Other -520 866 635 5757 73 27 55 chr11 130891127 130891980 -19891573 - SVA Other Other -520 866 38 276 30 0 0 chr11 130891985 130892018 -19891535 + (GGGAGA)n Simple_repeat Simple_repeat 1 33 0 585 175 0 0 chr11 130892021 130892118 -19891435 - AluJo/FRAM SINE Alu -17 295 199 2150 120 21 0 chr11 130892120 130892411 -19891142 - AluSx SINE Alu -11 301 5 592 151 0 0 chr11 130892417 130892510 -19891043 - MLT1A2 LTR MaLR -281 93 1 866 229 118 4 chr11 130892524 130892786 -19890767 + L1M4 LINE L1 3366 3657 -2489 1820 144 84 12 chr11 130892798 130893118 -19890435 + MLT2D LTR ERVL 6 348 -66 2070 153 21 15 chr11 130893149 130893483 -19890070 + MER2 DNA MER2_type 1 336 -9 315 190 0 0 chr11 130893506 130893564 -19889989 + L1MC4 LINE L1 6645 6702 -1340 474 49 0 0 chr11 130893621 130893682 -19889871 + (CA)n Simple_repeat Simple_repeat 2 62 0 274 129 0 16 chr11 130893682 130893734 -19889819 + MLT2B1 LTR ERVL 349 512 -1 2954 200 50 22 chr11 130893737 130894432 -19889121 + L1M4 LINE L1 3669 4477 -1669 1843 169 10 10 chr11 130894432 130894739 -19888814 + AluJo SINE Alu 1 307 -5 2954 200 50 22 chr11 130894739 130894960 -19888593 + L1M4 LINE L1 4477 4690 -1456 2125 123 7 0 chr11 130894975 130895267 -19888286 + AluSx SINE Alu 1 294 -18 416 241 16 29 chr11 130895275 130895435 -19888118 + AluJ/FLAM SINE Alu 1 75 -227 622 193 0 0 chr11 130895467 130895576 -19887977 - AluJo SINE Alu -86 226 118 477 59 52 0 chr11 130895587 130895669 -19887884 + HERVL LTR ERVL 5421 5496 -158 282 0 0 0 chr11 130895676 130895713 -19887840 - L1PA3 LINE L1 -3 6152 6116 1970 136 3 17 chr11 130895713 130896014 -19887539 - AluJb SINE Alu -15 297 1 328 103 35 0 chr11 130896014 130896072 -19887481 + MER5B DNA MER1_type 114 173 -5 2270 97 0 0 chr11 130896628 130896946 -19886607 - AluSc SINE Alu 0 318 1 1839 163 3 14 chr11 130897001 130897296 -19886257 - AluJo SINE Alu -20 292 1 2120 139 3 0 chr11 130897355 130897650 -19885903 + AluSx SINE Alu 1 296 -16 327 25 0 0 chr11 130898959 130898999 -19884554 + (CA)n Simple_repeat Simple_repeat 2 41 0 351 274 63 0 chr11 130900923 130901018 -19882535 + MER81 DNA DNA 4 104 -10 1887 170 3 0 chr11 130901425 130901719 -19881834 - AluJb SINE Alu -16 296 2 287 260 156 0 chr11 130902612 130902708 -19880845 + L2 LINE L2 3151 3261 -11 2408 87 0 10 chr11 130902862 130903172 -19880381 + AluSg SINE Alu 3 309 -1 189 0 0 0 chr11 130903610 130903631 -19879922 + (GCTG)n Simple_repeat Simple_repeat 1 21 0 398 328 73 42 chr11 130904354 130904931 -19878622 - L2 LINE L2 -1105 2209 1615 243 293 22 72 chr11 130905246 130905401 -19878152 + MIR3 SINE MIR 3 149 -59 2327 106 0 10 chr11 130905401 130905712 -19877841 + AluSx SINE Alu 1 308 -4 243 293 22 72 chr11 130905712 130905737 -19877816 + MIR3 SINE MIR 149 174 -34 1776 153 39 26 chr11 130905783 130906090 -19877463 + AluJo SINE Alu 1 311 -1 233 218 109 0 chr11 130906255 130906310 -19877243 - L2 LINE L2 -3 3310 3250 198 330 183 11 chr11 130906373 130906564 -19876989 + L2 LINE L2 2830 3053 -219 186 43 0 0 chr11 130906866 130906889 -19876664 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1682 141 48 7 chr11 130906892 130907162 -19876391 - AluJb SINE Alu -23 289 9 1021 297 70 68 chr11 130907391 130908102 -19875451 - MER21B LTR ERV1 -149 714 2 216 250 0 19 chr11 130908544 130908596 -19874957 + MER5A DNA MER1_type 8 58 -131 377 209 209 7 chr11 130908770 130908909 -19874644 + MER5A DNA MER1_type 22 188 -1 2430 66 0 7 chr11 130910162 130910466 -19873087 + AluY SINE Alu 4 305 -6 306 0 0 0 chr11 130910672 130910706 -19872847 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2115 134 0 7 chr11 130910765 130911070 -19872483 + AluSx SINE Alu 1 303 -9 1001 181 12 0 chr11 130912186 130912352 -19871201 + FAM SINE Alu 1 168 -7 1709 162 7 10 chr11 130912427 130912724 -19870829 + AluJb SINE Alu 1 296 -16 1994 99 0 90 chr11 130913022 130913345 -19870208 + AluSx SINE Alu 1 294 -18 1914 139 14 20 chr11 130913650 130913945 -19869608 + AluSx SINE Alu 1 293 -19 264 339 165 0 chr11 130914379 130914500 -19869053 + L2 LINE L2 3127 3267 -5 1652 159 16 26 chr11 130914630 130914939 -19868614 + AluJo SINE Alu 1 306 -6 240 299 75 59 chr11 130915175 130915362 -19868191 - L2 LINE L2 -177 3095 2906 2284 104 0 19 chr11 130915446 130915753 -19867800 + AluSg SINE Alu 1 301 -9 1863 114 20 93 chr11 130915882 130916225 -19867328 - AluYb8 SINE Alu 0 318 1 1473 195 61 28 chr11 130916235 130916686 -19866867 - L1ME LINE L1 -685 5759 5293 258 192 0 0 chr11 130916825 130916877 -19866676 + (TA)n Simple_repeat Simple_repeat 1 52 0 230 183 0 17 chr11 130916877 130916937 -19866616 - L1ME LINE L1 -4362 2064 2006 294 179 0 0 chr11 130916940 130916996 -19866557 + (TA)n Simple_repeat Simple_repeat 2 57 0 232 303 0 0 chr11 130916996 130917085 -19866468 + L1MC4 LINE L1 6614 6702 -1340 * 258 229 10 0 chr11 130917064 130917169 -19866384 - L1MC4 LINE L1 -1339 6983 2006 204 179 0 0 chr11 130917172 130917211 -19866342 + (TA)n Simple_repeat Simple_repeat 1 39 0 334 300 0 0 chr11 130917212 130917302 -19866251 - L1MC4 LINE L1 -1339 6703 6614 345 242 0 0 chr11 130917302 130917393 -19866160 + (TA)n Simple_repeat Simple_repeat 1 91 0 232 165 25 101 chr11 130917395 130917474 -19866079 + L1MC3 LINE L1 6574 6646 -1139 * 235 356 0 0 chr11 130917412 130917502 -19866051 - L1MC4 LINE L1 -1339 6703 6614 1791 160 3 11 chr11 130917538 130917820 -19865733 - AluJb SINE Alu -32 280 1 466 264 90 0 chr11 130917821 130917965 -19865588 - L1MC4 LINE L1 -2247 5561 5405 2251 130 0 3 chr11 130917974 130918282 -19865271 + AluSq SINE Alu 1 307 -6 336 287 60 45 chr11 130918332 130918737 -19864816 - L1MC4 LINE L1 -840 5306 4902 256 294 47 0 chr11 130918783 130918868 -19864685 + L2 LINE L2 3189 3277 -36 4060 168 27 21 chr11 130918895 130918936 -19864617 - L1MB4 LINE L1 -8 6172 6133 2182 130 0 7 chr11 130918936 130919237 -19864316 - AluSx SINE Alu -13 299 1 4060 168 27 21 chr11 130919237 130920000 -19863553 - L1MB4 LINE L1 -47 6133 5363 1792 128 81 34 chr11 130920000 130920321 -19863232 - MER2 DNA MER2_type 0 345 10 666 208 50 19 chr11 130920342 130920501 -19863052 - L1MB4 LINE L1 -782 5364 5201 523 110 0 12 chr11 130920557 130920639 -19862914 - AluSc SINE Alu -227 82 2 227 214 107 0 chr11 130920652 130920708 -19862845 - MIR SINE MIR -81 181 120 25 83 0 0 chr11 130922093 130922153 -19861400 + AT_rich Low_complexity Low_complexity 1 60 0 213 121 0 0 chr11 130922565 130922598 -19860955 + (TG)n Simple_repeat Simple_repeat 2 34 0 1766 100 52 84 chr11 130922599 130922909 -19860644 - AluSx SINE Alu -11 301 2 180 0 0 0 chr11 130923713 130923733 -19859820 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1995 116 0 14 chr11 130923737 130924014 -19859539 - AluSg SINE Alu -37 273 1 696 282 64 43 chr11 130924109 130924522 -19859031 - MLT1K LTR MaLR 0 588 110 1047 92 0 0 chr11 130924850 130924981 -19858572 + AluSq/x SINE Alu 1 131 -181 2253 107 3 23 chr11 130925197 130925507 -19858046 - AluSx SINE Alu -8 304 1 23 33 0 0 chr11 130927635 130927665 -19855888 + AT_rich Low_complexity Low_complexity 1 30 0 1050 96 0 0 chr11 130928376 130928511 -19855042 + AluSq/x SINE Alu 1 135 -177 2242 97 14 0 chr11 130928511 130928800 -19854753 + AluSx SINE Alu 1 293 -19 658 282 93 57 chr11 130928834 130929108 -19854445 + L1MC4a LINE L1 5288 5551 -570 2101 72 79 7 chr11 130929108 130929385 -19854168 - AluSc SINE Alu -11 298 2 658 282 93 57 chr11 130929385 130929714 -19853839 + L1MC4a LINE L1 5551 5824 -297 2357 97 3 0 chr11 130931400 130931699 -19851854 + AluY SINE Alu 1 300 -11 2316 147 44 40 chr11 130931892 130931932 -19851621 - MSTB2 LTR MaLR 0 457 419 1682 172 20 14 chr11 130931932 130932228 -19851325 + AluJo SINE Alu 1 298 -14 2316 147 44 40 chr11 130932228 130932642 -19850911 - MSTB2 LTR MaLR -38 419 1 214 288 17 0 chr11 130932839 130932898 -19850655 - L2 LINE L2 -7 3306 3247 2213 99 18 0 chr11 130933566 130933848 -19849705 + AluSx SINE Alu 1 287 -25 1075 160 0 6 chr11 130934415 130934590 -19848963 + FAM SINE Alu 1 174 -1 1822 161 0 23 chr11 130935415 130935714 -19847839 + AluJb SINE Alu 3 294 -18 1008 211 29 10 chr11 130936050 130936258 -19847295 + MER58A DNA MER1_type 9 220 -4 2363 87 0 7 chr11 130936947 130937247 -19846306 - AluSc SINE Alu -11 298 1 409 358 113 20 chr11 130937370 130937716 -19845837 - L2 LINE L2 -68 3204 2827 378 186 65 65 chr11 130937734 130937858 -19845695 - L1ME4a LINE L1 -45 6076 5953 1584 192 3 20 chr11 130938356 130938653 -19844900 + AluJo SINE Alu 1 292 -20 2009 130 3 3 chr11 130938811 130939096 -19844457 - AluSq SINE Alu -28 285 1 2254 110 0 3 chr11 130939218 130939518 -19844035 + AluJb SINE Alu 1 299 -13 2287 90 0 19 chr11 130939554 130939866 -19843687 + AluSc SINE Alu 1 306 -3 519 17 0 0 chr11 130941705 130941765 -19841788 + (TG)n Simple_repeat Simple_repeat 2 61 0 1256 248 91 64 chr11 130941828 130941889 -19841664 - MLT1F LTR MaLR 0 542 484 1874 173 10 0 chr11 130941889 130942178 -19841375 + AluJo SINE Alu 1 292 -20 1256 248 91 64 chr11 130942178 130942644 -19840909 - MLT1F LTR MaLR -58 484 1 201 302 0 0 chr11 130944458 130944511 -19839042 - MIR SINE MIR -6 256 204 29 0 0 0 chr11 130944572 130944601 -19838952 + AT_rich Low_complexity Low_complexity 1 29 0 1951 140 20 3 chr11 130944900 130945200 -19838353 + AluSx SINE Alu 1 305 -7 197 140 290 0 chr11 130945421 130945494 -19838059 + MIR SINE MIR 106 206 -56 189 315 217 0 chr11 130945598 130945690 -19837863 - MIR SINE MIR -76 132 21 189 0 0 0 chr11 130946535 130946556 -19836997 + (A)n Simple_repeat Simple_repeat 1 21 0 204 261 0 0 chr11 130948458 130948504 -19835049 + (TA)n Simple_repeat Simple_repeat 2 47 0 622 184 203 0 chr11 130948583 130948741 -19834812 + MER33 DNA MER1_type 1 190 -134 295 246 0 0 chr11 130948752 130948817 -19834736 + HAL1 LINE L1 825 889 -1618 1199 252 115 26 chr11 130948834 130949373 -19834180 + HAL1 LINE L1 950 1536 -971 956 231 197 20 chr11 130949380 130949786 -19833767 + HAL1 LINE L1 1721 2198 -309 21 0 0 0 chr11 130949878 130949899 -19833654 + AT_rich Low_complexity Low_complexity 1 21 0 294 260 108 39 chr11 130949903 130949956 -19833597 + L1ME4a LINE L1 5608 5656 -465 2252 122 0 0 chr11 130949956 130950252 -19833301 + AluSg SINE Alu 1 296 -14 294 260 108 39 chr11 130950252 130950402 -19833151 + L1ME4a LINE L1 5656 5825 -296 875 204 13 0 chr11 130950410 130950567 -19832986 + AluJb SINE Alu 138 296 -16 764 111 8 26 chr11 130950595 130950712 -19832841 + FLAM_C SINE Alu 2 116 -17 673 152 254 18 chr11 130950741 130950906 -19832647 + MER3 DNA MER1_type 6 209 0 336 251 93 54 chr11 130950912 130951171 -19832382 + L1ME4a LINE L1 5835 6103 -18 766 167 0 0 chr11 130951656 130951776 -19831777 + FLAM_A SINE Alu 2 121 -12 29 0 0 0 chr11 130951943 130951972 -19831581 + AT_rich Low_complexity Low_complexity 1 29 0 705 183 0 0 chr11 130952084 130952204 -19831349 + FLAM_A SINE Alu 2 121 -12 246 102 41 54 chr11 130952385 130952532 -19831021 + (TATAA)n Simple_repeat Simple_repeat 5 149 0 1016 173 0 39 chr11 130952870 130953049 -19830504 + FAM SINE Alu 1 172 -3 2281 92 23 13 chr11 130953218 130953521 -19830032 + AluSx SINE Alu 1 306 -6 2470 76 0 0 chr11 130953527 130953828 -19829725 + AluY SINE Alu 1 301 -10 2034 92 4 4 chr11 130955149 130955410 -19828143 + AluSx SINE Alu 1 261 -51 1523 128 0 0 chr11 130955410 130955613 -19827940 - AluJb SINE Alu -109 203 1 2138 136 0 0 chr11 130955615 130955910 -19827643 - AluSx SINE Alu -17 295 1 1662 167 7 20 chr11 130956182 130956475 -19827078 - AluJb SINE Alu -23 289 1 2348 90 3 10 chr11 130956503 130956803 -19826750 + AluSx SINE Alu 1 298 -14 955 159 40 28 chr11 130956813 130956989 -19826564 + AluJo SINE Alu 113 290 -22 2282 108 0 7 chr11 130957060 130957365 -19826188 + AluSx SINE Alu 1 303 -9 376 148 43 5 chr11 130957407 130957524 -19826029 - MER30B DNA MER1_type -47 183 2 1948 118 9 67 chr11 130957806 130958136 -19825417 + AluSx SINE Alu 1 311 -1 264 122 0 0 chr11 130958539 130958580 -19824973 + (T)n Simple_repeat Simple_repeat 1 41 0 286 333 172 36 chr11 130961437 130961855 -19821698 + L2 LINE L2 983 1457 -1857 620 213 0 16 chr11 130961932 130962059 -19821494 + FLAM_A SINE Alu 3 127 -6 184 237 0 0 chr11 130962597 130962635 -19820918 + MIR SINE MIR 53 90 -172 2006 104 43 0 chr11 130962854 130963133 -19820420 + AluSx SINE Alu 1 291 -21 2109 109 10 22 chr11 130964698 130965009 -19818544 - AluJb SINE Alu 0 312 6 2182 108 0 0 chr11 130965236 130965522 -19818031 + AluSx SINE Alu 9 294 -18 2275 97 13 7 chr11 130965529 130965838 -19817715 + AluSx SINE Alu 2 312 0 21 0 0 0 chr11 130966179 130966200 -19817353 + AT_rich Low_complexity Low_complexity 1 21 0 1514 183 67 97 chr11 130966306 130966737 -19816816 - L1MD3 LINE L1 -172 7823 7406 261 235 31 102 chr11 130966737 130966835 -19816718 - MLT1F1 LTR MaLR -442 125 35 2438 188 126 58 chr11 130966835 130967560 -19815993 - L1MC3 LINE L1 -688 7097 6324 1897 157 3 0 chr11 130967890 130968176 -19815377 - AluSx SINE Alu -25 287 1 23 0 0 0 chr11 130968180 130968203 -19815350 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr11 130968923 130968947 -19814606 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1667 138 33 25 chr11 130969620 130969895 -19813658 + AluJo SINE Alu 21 297 -15 2590 62 0 0 chr11 130969895 130970203 -19813350 + AluY SINE Alu 1 308 -3 249 57 0 0 chr11 130970945 130970980 -19812573 + (TA)n Simple_repeat Simple_repeat 2 36 0 192 77 0 0 chr11 130972642 130972668 -19810885 + (T)n Simple_repeat Simple_repeat 1 26 0 2296 107 0 13 chr11 130972945 130973255 -19810298 + AluSg SINE Alu 1 306 -4 254 290 125 34 chr11 130973329 130973567 -19809986 - L2 LINE L2 -279 2993 2734 204 125 0 0 chr11 130975040 130975072 -19808481 + (T)n Simple_repeat Simple_repeat 1 32 0 648 240 168 57 chr11 130975074 130975407 -19808146 - MER57A LTR ERV1 -31 372 3 621 274 24 100 chr11 130975409 130975683 -19807870 - MER51-int LTR ERV1 -490 7326 7087 2162 125 0 0 chr11 130975683 130975970 -19807583 - AluSx SINE Alu -25 287 1 621 274 24 100 chr11 130975970 130976075 -19807478 - MER51-int LTR ERV1 -729 7087 6976 492 323 20 5 chr11 130976266 130976464 -19807089 - MER57B LTR ERV1 -164 270 70 545 155 19 10 chr11 130976464 130976567 -19806986 - L1ME3 LINE L1 -154 6008 5905 255 125 0 0 chr11 130976567 130976607 -19806946 + (A)n Simple_repeat Simple_repeat 1 40 0 2048 112 0 26 chr11 130976658 130976970 -19806583 - AluSx SINE Alu -8 304 1 450 124 34 0 chr11 130977768 130977857 -19805696 + (TGGA)n Simple_repeat Simple_repeat 2 93 0 4998 66 23 65 chr11 130978788 130979191 -19804362 + L1PB1 LINE L1 5414 5832 -319 306 0 0 0 chr11 130979191 130979225 -19804328 + (TG)n Simple_repeat Simple_repeat 2 35 0 4998 66 23 65 chr11 130979225 130979534 -19804019 + L1PB1 LINE L1 5832 6094 -57 2243 110 0 3 chr11 130979534 130979833 -19803720 + AluSg SINE Alu 1 298 -12 4998 66 23 65 chr11 130979833 130979889 -19803664 + L1PB1 LINE L1 6094 6151 0 322 201 17 121 chr11 130980238 130980339 -19803214 + L1MEc LINE L1 983 1046 -5350 2379 97 0 3 chr11 130980339 130980649 -19802904 + AluSx SINE Alu 1 309 -3 322 201 17 121 chr11 130980649 130980786 -19802767 + L1MEc LINE L1 1046 1196 -5200 * 2112 186 75 112 chr11 130980760 130980967 -19802586 + L1MEc LINE L1 2341 2554 -3661 2105 146 0 0 chr11 130980967 130981261 -19802292 + AluSx SINE Alu 4 297 -15 824 153 0 0 chr11 130981270 130981414 -19802139 + L1MA8 LINE L1 6147 6290 -1 2112 186 75 112 chr11 130981414 130981469 -19802084 + L1MEc LINE L1 2562 2617 -3598 2124 108 0 0 chr11 130981469 130981746 -19801807 + AluSq SINE Alu 25 301 -12 2112 186 75 112 chr11 130981746 130981846 -19801707 + L1MEc LINE L1 2617 2719 -3496 1923 188 21 0 chr11 130981846 130982181 -19801372 - MER2 DNA MER2_type 0 344 3 2112 186 75 112 chr11 130982181 130982406 -19801147 + L1MEc LINE L1 2719 2901 -3314 2041 259 49 25 chr11 130982406 130983015 -19800538 + MLT1E2 LTR MaLR 3 626 0 2112 186 75 112 chr11 130983015 130983288 -19800265 + L1MEc LINE L1 2901 3182 -3033 186 43 0 0 chr11 130983292 130983315 -19800238 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2942 99 30 0 chr11 130983326 130983761 -19799792 + L1PA13 LINE L1 5709 6156 -7 209 215 0 65 chr11 130983770 130983877 -19799676 + A-rich Low_complexity Low_complexity 4 103 0 393 263 59 30 chr11 130983893 130984118 -19799435 + L1MEc LINE L1 3181 3415 -2800 2017 136 10 0 chr11 130984118 130984420 -19799133 + AluSx SINE Alu 1 305 -7 1095 182 94 25 chr11 130984430 130984705 -19798848 - MLT1A1 LTR MaLR 0 365 72 240 178 0 0 chr11 130984705 130984778 -19798775 + T-rich Low_complexity Low_complexity 1 73 0 6735 56 7 51 chr11 130984779 130985949 -19797604 - SVA Other Other -551 1384 433 26 0 0 0 chr11 130986059 130986085 -19797468 + AT_rich Low_complexity Low_complexity 1 26 0 233 37 0 0 chr11 130986086 130986113 -19797440 + (A)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr11 130986120 130986143 -19797410 + AT_rich Low_complexity Low_complexity 1 23 0 452 30 0 45 chr11 130986247 130986314 -19797239 + (A)n Simple_repeat Simple_repeat 1 64 0 24 0 0 0 chr11 130986424 130986448 -19797105 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr11 130986646 130986670 -19796883 + (A)n Simple_repeat Simple_repeat 1 24 0 2021 109 9 67 chr11 130986698 130987029 -19796524 - AluSx SINE Alu 0 312 1 376 148 43 5 chr11 130987311 130987428 -19796125 + MER30B DNA MER1_type 2 183 -47 2282 108 0 7 chr11 130987470 130987775 -19795778 - AluSx SINE Alu -9 303 1 955 159 40 28 chr11 130987846 130988022 -19795531 - AluJo SINE Alu -22 290 113 1785 149 7 17 chr11 130988032 130988334 -19795219 - AluSx SINE Alu -13 299 1 1604 176 3 24 chr11 130988362 130988657 -19794896 + AluJb SINE Alu 1 289 -23 23 0 0 0 chr11 130988989 130989012 -19794541 + AT_rich Low_complexity Low_complexity 1 23 0 777 207 11 29 chr11 130989108 130989282 -19794271 + AluSx SINE Alu 41 211 -101 2182 99 3 7 chr11 130989496 130989790 -19793763 - AluSp SINE Alu -16 297 5 1425 150 73 59 chr11 130989865 130990152 -19793401 - AluJo SINE Alu -21 291 1 1936 157 10 0 chr11 130990152 130990444 -19793109 - AluJo SINE Alu -16 296 1 1782 153 7 10 chr11 130991574 130991869 -19791684 - AluSx SINE Alu -18 294 1 956 124 0 0 chr11 130991872 130992001 -19791552 - AluJb SINE Alu -180 132 4 304 267 46 23 chr11 130992083 130992214 -19791339 - MIR SINE MIR -27 235 102 2173 88 4 7 chr11 130992773 130993047 -19790506 - AluSx SINE Alu -39 273 1 24 0 0 0 chr11 130993047 130993071 -19790482 + AT_rich Low_complexity Low_complexity 1 24 0 205 98 49 0 chr11 130993071 130993112 -19790441 + (TA)n Simple_repeat Simple_repeat 1 43 0 1911 145 3 30 chr11 130993112 130993270 -19790283 - AluSx SINE Alu -23 289 128 257 51 26 0 chr11 130993270 130993309 -19790244 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2258 72 11 11 chr11 130993309 130993588 -19789965 - AluSx SINE Alu -31 281 3 1911 145 3 30 chr11 130993588 130993725 -19789828 - AluSx SINE Alu -182 130 1 22 0 0 0 chr11 130993727 130993749 -19789804 + AT_rich Low_complexity Low_complexity 1 22 0 1048 106 45 34 chr11 130993752 130993931 -19789622 + AluSq SINE Alu 1 181 -132 295 79 0 0 chr11 130993932 130993970 -19789583 + AluSg/x SINE Alu 215 252 -50 26 0 0 0 chr11 130994398 130994424 -19789129 + AT_rich Low_complexity Low_complexity 1 26 0 2348 85 3 3 chr11 130994424 130994718 -19788835 + AluSp SINE Alu 1 294 -19 1228 104 17 0 chr11 130994750 130994923 -19788630 - AluSg/x SINE Alu -16 296 121 180 0 0 0 chr11 130994966 130994986 -19788567 + (G)n Simple_repeat Simple_repeat 1 20 0 310 341 12 18 chr11 130994986 130995156 -19788397 - AluSg/x SINE Alu -66 236 68 214 174 0 0 chr11 130995180 130995226 -19788327 + T-rich Low_complexity Low_complexity 1 46 0 243 0 0 0 chr11 130995257 130995284 -19788269 + (C)n Simple_repeat Simple_repeat 1 27 0 528 273 0 0 chr11 130995401 130995551 -19788002 + AluSp/q SINE Alu 164 313 0 357 350 0 6 chr11 130995551 130995734 -19787819 + AluSg/x SINE Alu 121 302 0 241 292 67 11 chr11 130995887 130995976 -19787577 + L2 LINE L2 3169 3262 -10 273 57 0 0 chr11 130996199 130996234 -19787319 + (T)n Simple_repeat Simple_repeat 1 35 0 26 0 0 0 chr11 130996252 130996278 -19787275 + GC_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr11 130996302 130996330 -19787223 + GC_rich Low_complexity Low_complexity 1 28 0 33 0 0 0 chr11 130996382 130996415 -19787138 + AT_rich Low_complexity Low_complexity 1 33 0 38 51 0 0 chr11 130996581 130996640 -19786913 + AT_rich Low_complexity Low_complexity 1 59 0 22 0 0 0 chr11 130996686 130996708 -19786845 + AT_rich Low_complexity Low_complexity 1 22 0 1082 109 25 37 chr11 130996832 130996869 -19786684 - L1M1 LINE L1 -785 5518 5482 2185 106 10 0 chr11 130996869 130997161 -19786392 - AluSg SINE Alu -15 295 1 1082 109 25 37 chr11 130997161 130997306 -19786247 - L1M1 LINE L1 -821 5482 5327 2341 93 3 10 chr11 130997306 130997606 -19785947 + AluSx SINE Alu 1 298 -14 1082 109 25 37 chr11 130997606 130997653 -19785900 - L1M1 LINE L1 -976 5327 5281 308 291 31 24 chr11 130997676 130997803 -19785750 + FRAM SINE Alu 35 162 -4 32 0 0 0 chr11 130997835 130997867 -19785686 + AT_rich Low_complexity Low_complexity 1 32 0 412 228 16 31 chr11 130997868 130997995 -19785558 + AluSq/x SINE Alu 1 125 -178 286 273 45 30 chr11 130998485 130998617 -19784936 + MIR SINE MIR 102 235 -27 1321 226 10 27 chr11 130998699 130998832 -19784721 + AluJb SINE Alu 4 138 -164 2470 71 0 7 chr11 130998832 130999129 -19784424 + AluSx SINE Alu 1 295 -17 1321 226 10 27 chr11 130999129 130999156 -19784397 + AluJb SINE Alu 138 295 -7 405 294 22 22 chr11 130999156 130999292 -19784261 + FRAM SINE Alu 24 159 -17 23 92 0 0 chr11 130999506 130999571 -19783982 + AT_rich Low_complexity Low_complexity 1 65 0 * 586 236 77 91 chr11 130999553 130999625 -19783928 + L1ME4a LINE L1 5712 5784 -337 2281 81 3 3 chr11 130999625 130999920 -19783633 + AluY SINE Alu 1 295 -16 586 236 77 91 chr11 130999920 130999959 -19783594 + L1ME4a LINE L1 5784 5822 -299 22 0 0 0 chr11 130999959 130999981 -19783572 + AT_rich Low_complexity Low_complexity 1 22 0 586 236 77 91 chr11 130999981 131000263 -19783290 + L1ME4a LINE L1 5822 6121 0 1412 158 3 53 chr11 131000415 131000718 -19782835 + AluJo SINE Alu 2 289 -23 27 0 0 0 chr11 131000890 131000917 -19782636 + AT_rich Low_complexity Low_complexity 1 27 0 480 281 100 15 chr11 131000940 131001200 -19782353 + L1ME4a LINE L1 5840 6121 0 1649 133 9 82 chr11 131001352 131001682 -19781871 + AluJo SINE Alu 2 307 -5 268 305 94 16 chr11 131002020 131002148 -19781405 - L2 LINE L2 -1040 2274 2137 382 299 127 6 chr11 131002277 131002591 -19780962 - L2 LINE L2 -1230 2084 1733 1825 108 0 0 chr11 131002622 131002873 -19780680 + AluSq SINE Alu 45 295 -18 29 78 0 0 chr11 131002900 131002964 -19780589 + AT_rich Low_complexity Low_complexity 1 64 0 407 153 14 0 chr11 131003107 131003179 -19780374 + AluSp/q SINE Alu 225 297 -16 620 195 16 8 chr11 131003261 131003384 -19780169 - MSTC LTR MaLR -303 125 2 344 93 0 0 chr11 131003405 131003448 -19780105 + Alu SINE Alu 1 43 -260 1989 129 0 7 chr11 131003558 131003867 -19779686 + AluSx SINE Alu 4 310 -2 2416 51 0 7 chr11 131003886 131004179 -19779374 + AluY SINE Alu 1 291 -20 523 178 37 0 chr11 131004281 131004416 -19779137 + L1MB7 LINE L1 6044 6183 -1 2268 62 0 23 chr11 131004445 131004749 -19778804 - AluY SINE Alu -14 297 1 2220 95 0 3 chr11 131006032 131006326 -19777227 + AluSx SINE Alu 1 293 -19 27 0 0 0 chr11 131006397 131006424 -19777129 + AT_rich Low_complexity Low_complexity 1 27 0 1716 152 0 40 chr11 131006424 131006602 -19776951 - AluJo SINE Alu -21 291 128 2426 47 0 10 chr11 131006602 131006901 -19776652 + AluY SINE Alu 1 296 -15 1716 152 0 40 chr11 131006901 131007025 -19776528 - AluJo SINE Alu -184 128 1 1554 177 7 20 chr11 131007284 131007589 -19775964 - AluJb SINE Alu -11 301 1 2189 87 3 13 chr11 131007617 131007917 -19775636 + AluSx SINE Alu 1 297 -15 872 190 23 23 chr11 131007928 131008102 -19775451 + AluJo SINE Alu 113 286 -26 2173 105 0 7 chr11 131008177 131008482 -19775071 + AluSx SINE Alu 1 303 -9 376 148 43 5 chr11 131008524 131008641 -19774912 - MER30B DNA MER1_type -47 183 2 1166 109 11 22 chr11 131008923 131009107 -19774446 + AluSx SINE Alu 1 182 -130 264 122 0 0 chr11 131009694 131009735 -19773818 + (T)n Simple_repeat Simple_repeat 1 41 0 425 333 172 36 chr11 131012583 131013001 -19770552 + L2 LINE L2 983 1457 -1857 627 213 0 16 chr11 131013078 131013205 -19770348 + FLAM_A SINE Alu 3 127 -6 226 299 170 7 chr11 131013348 131013495 -19770058 + L2 LINE L2 1899 2069 -1245 198 237 0 0 chr11 131013743 131013781 -19769772 + MIR SINE MIR 53 90 -172 1890 104 43 0 chr11 131014000 131014279 -19769274 + AluSx SINE Alu 1 291 -21 198 260 19 67 chr11 131014331 131014435 -19769118 + MIR3 SINE MIR 103 201 -7 2015 107 10 19 chr11 131015845 131016155 -19767398 - AluJb SINE Alu 0 312 6 2063 108 0 0 chr11 131016382 131016668 -19766885 + AluSx SINE Alu 9 294 -18 1731 152 13 10 chr11 131016675 131016985 -19766568 + AluSx SINE Alu 2 312 0 21 0 0 0 chr11 131017326 131017347 -19766206 + AT_rich Low_complexity Low_complexity 1 21 0 1913 175 160 112 chr11 131017464 131017884 -19765669 - L1MD3 LINE L1 -185 7600 7201 260 235 31 102 chr11 131017884 131017982 -19765571 - MLT1F1 LTR MaLR -442 125 35 1913 175 160 112 chr11 131017982 131018613 -19764940 - L1MD3 LINE L1 -584 7201 6418 1828 152 0 7 chr11 131018745 131019041 -19764512 - AluJb SINE Alu -18 294 1 225 0 0 0 chr11 131019493 131019518 -19764035 + (T)n Simple_repeat Simple_repeat 1 25 0 936 258 27 14 chr11 131020818 131021039 -19762514 - MIR SINE MIR -37 225 2 2245 112 0 0 chr11 131024134 131024446 -19759107 - AluSx SINE Alu 0 312 1 2311 83 3 0 chr11 131024457 131024757 -19758796 - AluSp SINE Alu -8 305 5 853 112 15 22 chr11 131024764 131024898 -19758655 - FLAM_C SINE Alu 0 133 1 421 305 57 17 chr11 131024903 131025080 -19758473 - L1M4 LINE L1 -844 5302 5119 2173 87 3 17 chr11 131025083 131025382 -19758171 - AluSc SINE Alu -14 295 1 835 81 81 0 chr11 131025382 131025505 -19758048 - AluSc SINE Alu -176 133 1 580 99 55 22 chr11 131025505 131025596 -19757957 - AluJo/FLAM SINE Alu -179 133 40 1982 125 0 20 chr11 131025608 131025913 -19757640 - AluSx SINE Alu -13 299 1 838 136 14 14 chr11 131025915 131026055 -19757498 - FLAM_C SINE Alu -2 141 2 306 298 64 35 chr11 131026058 131026199 -19757354 - L1 LINE L1 -843 5303 5159 2396 70 0 0 chr11 131026241 131026539 -19757014 - AluY SINE Alu -13 298 1 1857 148 59 0 chr11 131026595 131026919 -19756634 - L1MB7 LINE L1 -1 6183 5841 1053 71 0 0 chr11 131027466 131027607 -19755946 + AluY SINE Alu 156 296 -15 2200 113 0 0 chr11 131027680 131027981 -19755572 - AluSx SINE Alu -11 301 1 1184 194 0 4 chr11 131028013 131028250 -19755303 + L1 LINE L1 4859 5094 -1052 2462 66 0 0 chr11 131028254 131028555 -19754998 + AluSc SINE Alu 1 301 -8 972 0 0 0 chr11 131028664 131028772 -19754781 + (G)n Simple_repeat Simple_repeat 1 108 0 428 281 14 0 chr11 131028855 131028994 -19754559 + AluSg/x SINE Alu 157 297 -15 569 296 11 6 chr11 131029025 131029204 -19754349 + AluSc SINE Alu 130 309 0 608 154 120 26 chr11 131029219 131029424 -19754129 + AluJb SINE Alu 26 298 -14 234 0 0 0 chr11 131029433 131029459 -19754094 + (TAAAA)n Simple_repeat Simple_repeat 4 29 0 458 309 29 15 chr11 131029715 131029893 -19753660 + MIR SINE MIR 18 198 -57 26 0 0 0 chr11 131030245 131030271 -19753282 + AT_rich Low_complexity Low_complexity 1 26 0 2018 124 0 3 chr11 131030271 131030577 -19752976 + AluSx SINE Alu 1 305 -7 1361 235 155 19 chr11 131030668 131031081 -19752472 - L2 LINE L2 -20 3293 2825 271 167 0 0 chr11 131031167 131031215 -19752338 + L1MC4 LINE L1 6656 6703 -1339 2020 125 10 0 chr11 131031331 131031636 -19751917 - AluSx SINE Alu -4 308 1 1911 96 0 0 chr11 131031729 131031980 -19751573 - AluSq SINE Alu -18 295 45 1059 335 93 36 chr11 131032011 131033009 -19750544 + L2 LINE L2 1733 2787 -527 1757 171 3 13 chr11 131033053 131033362 -19750191 - AluJb SINE Alu -6 306 1 1344 131 72 0 chr11 131033402 131033624 -19749929 - AluSx SINE Alu -74 238 1 424 224 13 0 chr11 131033715 131033791 -19749762 + L2 LINE L2 3195 3271 -1 300 283 142 9 chr11 131034181 131034287 -19749266 - L2 LINE L2 -2 3270 3151 1626 120 0 0 chr11 131034328 131034561 -19748992 - AluSg/x SINE Alu -13 299 67 1614 131 13 67 chr11 131034611 131034754 -19748799 + AluSx SINE Alu 1 119 -193 2219 115 0 0 chr11 131034754 131035058 -19748495 + AluSx SINE Alu 1 304 -8 1614 131 13 67 chr11 131035058 131035227 -19748326 + AluSx SINE Alu 119 296 -16 2144 95 3 3 chr11 131035259 131035553 -19748000 - AluSp SINE Alu -19 294 1 25 0 0 0 chr11 131035553 131035578 -19747975 + AT_rich Low_complexity Low_complexity 1 25 0 458 309 29 15 chr11 131035930 131036108 -19747445 - MIR SINE MIR -57 151 18 234 0 0 0 chr11 131036364 131036390 -19747163 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 503 187 120 26 chr11 131036399 131036604 -19746949 - AluJb SINE Alu -14 298 26 1863 148 10 3 chr11 131036622 131036932 -19746621 - AluSx SINE Alu 0 312 1 1290 265 81 11 chr11 131036932 131037390 -19746163 + L1MC4a LINE L1 5514 6004 -117 2103 100 33 0 chr11 131037487 131037786 -19745767 - AluSg SINE Alu -1 309 1 2269 78 10 3 chr11 131037796 131038105 -19745448 - AluSx SINE Alu -1 311 1 21 0 0 0 chr11 131038159 131038180 -19745373 + AT_rich Low_complexity Low_complexity 1 21 0 2235 43 14 3 chr11 131038229 131038511 -19745042 - AluY SINE Alu -8 303 19 465 232 309 5 chr11 131038531 131038725 -19744828 + MIR SINE MIR 8 260 -2 326 23 0 23 chr11 131039121 131039165 -19744388 + (GA)n Simple_repeat Simple_repeat 2 44 0 25 51 0 0 chr11 131040912 131040951 -19742602 + GC_rich Low_complexity Low_complexity 1 39 0 42 92 0 0 chr11 131041230 131041349 -19742204 + GC_rich Low_complexity Low_complexity 1 119 0 183 100 0 0 chr11 131041356 131041386 -19742167 + (CGG)n Simple_repeat Simple_repeat 1 30 0 246 62 0 0 chr11 131043830 131043862 -19739691 + (A)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr11 131045454 131045476 -19738077 + AT_rich Low_complexity Low_complexity 1 22 0 432 307 112 11 chr11 131045576 131045755 -19737798 + MIR3 SINE MIR 4 200 -8 523 146 104 0 chr11 131045844 131045940 -19737613 - FLAM_A SINE Alu -11 131 26 737 275 90 0 chr11 131049167 131049238 -19734315 + MIR SINE MIR 13 76 -186 1748 181 7 3 chr11 131049238 131049547 -19734006 - AluJb SINE Alu -2 310 1 737 275 90 0 chr11 131049547 131049697 -19733856 + MIR SINE MIR 76 254 -8 2297 104 3 3 chr11 131050393 131050701 -19732852 + AluSx SINE Alu 1 308 -4 2008 131 0 0 chr11 131050738 131051050 -19732503 + AluSx SINE Alu 1 282 -30 408 323 24 24 chr11 131051097 131051224 -19732329 - MIR SINE MIR -135 127 1 237 396 111 11 chr11 131051224 131051493 -19732060 + L2 LINE L2 2462 2757 -557 216 269 66 112 chr11 131051590 131051787 -19731766 + L2 LINE L2 2868 3055 -217 792 253 129 33 chr11 131052305 131052637 -19730916 + L3b LINE CR1 1102 1465 -118 1756 144 3 85 chr11 131053943 131054283 -19729270 + AluJb SINE Alu 1 312 0 1775 170 6 16 chr11 131055873 131056047 -19727506 - AluJo SINE Alu -4 308 137 1815 133 0 18 chr11 131056047 131056326 -19727227 - AluSx SINE Alu -4 308 35 1775 170 6 16 chr11 131056326 131056462 -19727091 - AluJo SINE Alu -175 137 1 938 228 12 6 chr11 131056704 131056875 -19726678 - FAM SINE Alu -3 172 1 1673 173 14 0 chr11 131056924 131057213 -19726340 + AluJo SINE Alu 1 293 -19 2529 260 84 117 chr11 131057244 131057293 -19726260 + L2 LINE L2 1475 1524 -1789 2356 94 0 0 chr11 131057293 131057601 -19725952 - AluSg SINE Alu -1 309 2 2529 260 84 117 chr11 131057601 131059146 -19724407 + L2 LINE L2 1524 3016 -297 418 171 0 14 chr11 131059176 131059245 -19724308 - MER58 DNA MER1_type -57 284 217 463 202 34 0 chr11 131059245 131059334 -19724219 - Tigger5 DNA MER2_type 0 2323 2232 364 132 19 0 chr11 131059340 131059393 -19724160 - Tigger5 DNA MER2_type -2269 54 1 649 185 143 63 chr11 131059399 131059588 -19723965 - MER58 DNA MER1_type -2208 212 9 869 198 13 0 chr11 131059704 131059861 -19723692 - AluJo SINE Alu -17 295 137 500 181 118 21 chr11 131059873 131060017 -19723536 + L2 LINE L2 3156 3313 0 28 0 0 0 chr11 131060330 131060358 -19723195 + AT_rich Low_complexity Low_complexity 1 28 0 1711 162 40 13 chr11 131060358 131060661 -19722892 - AluJb SINE Alu -1 311 1 671 189 47 16 chr11 131060681 131060808 -19722745 - AluJo SINE Alu -171 131 1 788 143 109 0 chr11 131060891 131061010 -19722543 + FLAM_C SINE Alu 2 133 -10 2209 113 0 3 chr11 131061017 131061309 -19722244 - AluSg SINE Alu -18 292 2 292 318 127 56 chr11 131061486 131061930 -19721623 + L2 LINE L2 2323 2845 -427 2287 106 3 19 chr11 131061930 131062242 -19721311 - AluSg SINE Alu -3 307 1 292 318 127 56 chr11 131062242 131062513 -19721040 + L2 LINE L2 2845 3095 -177 1634 165 16 26 chr11 131062749 131063058 -19720495 - AluJo SINE Alu -6 306 1 303 339 165 0 chr11 131063188 131063309 -19720244 - L2 LINE L2 -5 3267 3127 1915 136 14 20 chr11 131063743 131064038 -19719515 - AluSx SINE Alu -19 293 1 1984 99 0 89 chr11 131064342 131064666 -19718887 - AluSx SINE Alu -17 295 1 1684 162 7 10 chr11 131064964 131065261 -19718292 - AluJb SINE Alu -16 296 1 1066 181 12 0 chr11 131065336 131065502 -19718051 - FAM SINE Alu -7 168 1 185 355 194 0 chr11 131065580 131065673 -19717880 + L2 LINE L2 3162 3272 0 1980 151 0 7 chr11 131066620 131066925 -19716628 - AluSx SINE Alu -9 303 1 249 33 0 0 chr11 131066988 131067018 -19716535 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2451 62 0 13 chr11 131067224 131067533 -19716020 - AluY SINE Alu -6 305 1 970 113 0 23 chr11 131067796 131067929 -19715624 - FLAM_C SINE Alu -3 130 1 301 241 0 0 chr11 131068336 131068394 -19715159 + MIR SINE MIR 75 132 -76 7281 96 30 16 chr11 131068419 131068925 -19714628 + HSMAR2 DNA Mariner 2 499 -803 2086 132 3 13 chr11 131068925 131069229 -19714324 + AluSq SINE Alu 1 301 -12 7281 96 30 16 chr11 131069229 131069792 -19713761 + HSMAR2 DNA Mariner 499 1086 -216 804 139 0 8 chr11 131069805 131069927 -19713626 + AluSc SINE Alu 177 297 -12 1575 86 18 0 chr11 131069927 131070148 -19713405 + HSMAR2 DNA Mariner 1077 1301 -1 214 387 9 0 chr11 131070223 131070329 -19713224 - MIR SINE MIR -135 127 21 26 50 0 0 chr11 131070717 131070757 -19712796 + AT_rich Low_complexity Low_complexity 1 40 0 1450 168 9 0 chr11 131070759 131070991 -19712562 + AluJo SINE Alu 39 272 -40 759 202 47 0 chr11 131070993 131071122 -19712431 - AluJo SINE Alu -171 141 7 1805 124 60 18 chr11 131071204 131071524 -19712029 + AluSx SINE Alu 1 312 0 582 222 77 0 chr11 131071584 131071701 -19711852 + FLAM_A SINE Alu 1 126 -7 2290 111 0 0 chr11 131071766 131072064 -19711489 + AluSx SINE Alu 1 298 -14 1338 44 6 0 chr11 131073663 131073821 -19709732 - L1PA3 LINE L1 0 6155 5997 326 100 0 0 chr11 131074974 131075024 -19708529 - Alu SINE Alu 0 300 251 270 294 0 24 chr11 131078437 131078522 -19705031 + GA-rich Low_complexity Low_complexity 1 83 0 262 380 57 6 chr11 131079084 131079242 -19704311 - L2 LINE L2 -212 3060 2895 1830 140 0 31 chr11 131079517 131079841 -19703712 + AluSx SINE Alu 1 315 0 2382 86 0 0 chr11 131080116 131080418 -19703135 + AluY SINE Alu 1 302 -9 2367 69 3 3 chr11 131080583 131080872 -19702681 - AluSp SINE Alu -16 297 9 1058 164 229 0 chr11 131081056 131081257 -19702296 - AluJo SINE Alu -17 295 49 680 274 75 16 chr11 131081744 131081999 -19701554 - LTR16B LTR ERVL -3 461 192 225 0 0 0 chr11 131082173 131082198 -19701355 + (T)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr11 131082323 131082346 -19701207 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 131082346 131082367 -19701186 + AT_rich Low_complexity Low_complexity 1 21 0 38 39 0 39 chr11 131082404 131082482 -19701071 + GC_rich Low_complexity Low_complexity 1 75 0 38 0 0 0 chr11 131082492 131082530 -19701023 + AT_rich Low_complexity Low_complexity 1 38 0 288 0 0 0 chr11 131082539 131082571 -19700982 + (T)n Simple_repeat Simple_repeat 1 32 0 1773 142 3 86 chr11 131084022 131084361 -19699192 + AluJb SINE Alu 1 311 -1 1557 181 10 26 chr11 131085951 131086123 -19697430 - AluJo SINE Alu -7 305 139 2012 112 0 11 chr11 131086123 131086400 -19697153 - AluSx SINE Alu -4 308 35 1557 181 10 26 chr11 131086400 131086537 -19697016 - AluJo SINE Alu -173 139 1 938 228 12 6 chr11 131086779 131086950 -19696603 - FAM SINE Alu -3 172 1 1673 173 14 0 chr11 131086999 131087288 -19696265 + AluJo SINE Alu 1 293 -19 2216 79 3 7 chr11 131087386 131087677 -19695876 - AluSg SINE Alu -20 290 1 287 333 40 35 chr11 131087831 131088029 -19695524 - MIR SINE MIR -43 219 21 629 254 49 22 chr11 131088457 131088549 -19695004 + L2 LINE L2 512 600 -2714 1767 157 38 7 chr11 131088549 131088842 -19694711 - AluJb SINE Alu -10 302 1 629 254 49 22 chr11 131088842 131088934 -19694619 + L2 LINE L2 600 701 -2613 621 192 29 125 chr11 131088943 131089085 -19694468 + MER5A DNA MER1_type 1 118 -71 750 215 16 0 chr11 131089085 131089206 -19694347 - FLAM_A SINE Alu -10 123 1 621 192 29 125 chr11 131089206 131089271 -19694282 + MER5A DNA MER1_type 118 188 -1 * 1490 274 199 9 chr11 131089271 131089722 -19693831 + L2 LINE L2 696 1059 -2255 2036 110 45 14 chr11 131089722 131090014 -19693539 + AluSx SINE Alu 1 301 -11 1490 274 199 9 chr11 131090014 131090245 -19693308 + L2 LINE L2 1059 1509 -1805 182 284 96 96 chr11 131090342 131090560 -19692993 + L2 LINE L2 2969 3186 -86 803 60 0 0 chr11 131091521 131091621 -19691932 + L1PA10 LINE L1 5567 5666 -502 198 0 0 0 chr11 131091621 131091643 -19691910 + (CTATT)n Simple_repeat Simple_repeat 3 24 0 3753 79 27 0 chr11 131091834 131092314 -19691239 + L1PA10 LINE L1 5674 6166 -2 199 291 214 17 chr11 131092817 131092934 -19690619 - MIR3 SINE MIR -60 148 9 1689 136 7 78 chr11 131094211 131094343 -19689210 + AluJo SINE Alu 12 152 -160 1937 140 0 7 chr11 131094343 131094635 -19688918 + AluJb SINE Alu 12 301 -11 1689 136 7 78 chr11 131094635 131094810 -19688743 + AluJo SINE Alu 152 297 -15 1721 134 72 14 chr11 131094810 131095086 -19688467 + AluSg SINE Alu 1 292 -18 198 0 0 0 chr11 131095540 131095562 -19687991 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr11 131095584 131095606 -19687947 + GC_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 131095776 131095800 -19687753 + AT_rich Low_complexity Low_complexity 1 24 0 207 139 0 0 chr11 131095949 131095985 -19687568 + (A)n Simple_repeat Simple_repeat 1 36 0 640 273 75 36 chr11 131096037 131096290 -19687263 + MLT1L LTR MaLR 321 583 -32 239 257 0 29 chr11 131096483 131096553 -19687000 - MER5A DNA MER1_type -25 164 97 1472 196 0 6 chr11 131096586 131096898 -19686655 + AluSg SINE Alu 1 310 0 1566 173 17 27 chr11 131097027 131097322 -19686231 + AluJo SINE Alu 1 292 -20 207 0 0 0 chr11 131097349 131097372 -19686181 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 375 151 0 0 chr11 131097372 131097425 -19686128 - AluJ/FRAM SINE Alu -18 284 232 24 0 0 0 chr11 131097814 131097838 -19685715 + AT_rich Low_complexity Low_complexity 1 24 0 2260 95 0 20 chr11 131097971 131098267 -19685286 + AluSg SINE Alu 1 290 -20 303 339 165 0 chr11 131098703 131098824 -19684729 + L2 LINE L2 3127 3267 -5 1650 162 16 26 chr11 131098954 131099263 -19684290 + AluJo SINE Alu 1 306 -6 292 299 75 59 chr11 131099499 131099686 -19683867 - L2 LINE L2 -177 3095 2906 2102 103 0 39 chr11 131099770 131100080 -19683473 + AluSc SINE Alu 1 298 -11 358 252 339 17 chr11 131100081 131100311 -19683242 + L2 LINE L2 1206 1509 -1805 182 284 96 96 chr11 131100408 131100626 -19682927 + L2 LINE L2 2969 3186 -86 804 60 0 0 chr11 131101585 131101685 -19681868 + L1P4 LINE L1 5567 5666 -502 198 0 0 0 chr11 131101685 131101707 -19681846 + (CTATT)n Simple_repeat Simple_repeat 3 24 0 309 226 49 39 chr11 131101884 131101986 -19681567 + L1MC/D LINE L1 5667 5769 -2039 3579 79 27 0 chr11 131101898 131102378 -19681175 + L1PA10 LINE L1 5674 6166 -2 1930 140 4 0 chr11 131104324 131104603 -19678950 - AluSp SINE Alu -33 280 1 24 0 0 0 chr11 131104603 131104627 -19678926 + AT_rich Low_complexity Low_complexity 1 24 0 205 98 49 0 chr11 131104627 131104668 -19678885 + (TA)n Simple_repeat Simple_repeat 2 44 0 979 180 0 24 chr11 131104668 131104835 -19678718 - AluSg/x SINE Alu -23 287 125 1558 112 0 5 chr11 131104940 131105145 -19678408 - AluSx SINE Alu -108 204 1 319 299 154 0 chr11 131105391 131105508 -19678045 - L2 LINE L2 0 3272 3138 2160 126 0 0 chr11 131105898 131106200 -19677353 + AluSx SINE Alu 1 302 -10 2375 81 0 7 chr11 131106279 131106589 -19676964 + AluSx SINE Alu 1 308 -4 1156 149 0 0 chr11 131106589 131106757 -19676796 + AluSg/x SINE Alu 134 301 -11 329 224 41 20 chr11 131106809 131106907 -19676646 - L2 LINE L2 -994 2320 2221 442 209 61 52 chr11 131106941 131107056 -19676497 + L2 LINE L2 3198 3313 0 244 325 91 22 chr11 131107049 131107280 -19676273 - L2 LINE L2 -1139 2175 1929 * 533 188 145 17 chr11 131107287 131107404 -19676149 + FLAM_A SINE Alu 1 132 -1 2268 98 0 3 chr11 131107412 131107707 -19675846 + AluSq SINE Alu 1 294 -19 524 113 0 0 chr11 131107804 131107875 -19675678 + AluS SINE Alu 224 294 -15 2199 106 3 0 chr11 131107958 131108240 -19675313 - AluSx SINE Alu -29 283 1 32 31 0 46 chr11 131108240 131108281 -19675272 + AT_rich Low_complexity Low_complexity 1 39 -23 1884 140 3 51 chr11 131108281 131108460 -19675093 - AluSx SINE Alu -12 300 141 2368 90 10 10 chr11 131108460 131108772 -19674781 - AluSx SINE Alu 0 312 1 1884 140 3 51 chr11 131108772 131108907 -19674646 - AluSx SINE Alu -171 141 1 32 31 0 46 chr11 131108907 131108930 -19674623 + AT_rich Low_complexity Low_complexity 39 62 0 1931 98 59 21 chr11 131108934 131109220 -19674333 + AluSx SINE Alu 1 297 -15 191 190 0 52 chr11 131109379 131109437 -19674116 + L2 LINE L2 2458 2512 -802 1020 256 166 18 chr11 131109501 131109646 -19673907 + L2 LINE L2 2521 2643 -670 2329 96 7 0 chr11 131109646 131109947 -19673606 - AluSg SINE Alu -7 303 1 1020 256 166 18 chr11 131109947 131110409 -19673144 + L2 LINE L2 2643 3206 -107 2499 64 7 0 chr11 131110468 131110763 -19672790 + AluSc SINE Alu 1 297 -12 441 272 107 0 chr11 131111134 131111303 -19672250 - MIR SINE MIR -11 251 65 2068 116 0 27 chr11 131111308 131111640 -19671913 + AluSx SINE Alu 1 324 0 1338 115 0 0 chr11 131111640 131111822 -19671731 + AluSg/x SINE Alu 122 303 -7 1198 235 153 20 chr11 131111922 131112326 -19671227 - L2 LINE L2 -31 3282 2825 275 167 0 0 chr11 131112412 131112460 -19671093 + L1MC4 LINE L1 6656 6703 -1339 2140 125 10 0 chr11 131112576 131112881 -19670672 - AluSx SINE Alu -4 308 1 1989 100 0 0 chr11 131112974 131113225 -19670328 - AluSq SINE Alu -18 295 45 734 336 93 36 chr11 131113256 131114254 -19669299 + L2 LINE L2 1733 2787 -527 1910 163 3 13 chr11 131114298 131114605 -19668948 - AluJb SINE Alu -8 304 1 1436 131 72 0 chr11 131114645 131114867 -19668686 - AluSx SINE Alu -74 238 1 395 224 13 0 chr11 131114958 131115034 -19668519 + L2 LINE L2 3195 3271 -1 275 274 142 9 chr11 131115424 131115530 -19668023 - L2 LINE L2 -2 3270 3151 2187 127 0 0 chr11 131115571 131115870 -19667683 - AluSx SINE Alu -13 299 1 25 0 0 0 chr11 131115871 131115896 -19667657 + AT_rich Low_complexity Low_complexity 1 25 0 407 300 30 16 chr11 131116248 131116426 -19667127 - MIR SINE MIR -62 146 18 234 0 0 0 chr11 131116682 131116708 -19666845 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 600 154 120 26 chr11 131116718 131116923 -19666630 - AluJb SINE Alu -14 298 26 2000 145 10 3 chr11 131116939 131117249 -19666304 - AluSx SINE Alu 0 312 1 1293 268 81 11 chr11 131117249 131117707 -19665846 + L1MC4a LINE L1 5514 6004 -117 1228 149 36 65 chr11 131117806 131118115 -19665438 - AluSg SINE Alu 0 300 1 2043 71 11 11 chr11 131118125 131118394 -19665159 - AluSx SINE Alu -6 306 38 767 189 8 0 chr11 131118401 131118533 -19665020 - FLAM_C SINE Alu 0 133 1 877 228 12 6 chr11 131118775 131118946 -19664607 - FAM SINE Alu -3 172 1 1686 173 14 0 chr11 131118995 131119284 -19664269 + AluJo SINE Alu 1 293 -19 2295 78 3 0 chr11 131119388 131119671 -19663882 - AluSg SINE Alu -25 285 2 2124 260 85 113 chr11 131119682 131121215 -19662338 + L2 LINE L2 1527 3016 -297 420 171 0 14 chr11 131121245 131121314 -19662239 - MER58 DNA MER1_type -57 284 217 461 202 34 0 chr11 131121314 131121403 -19662150 - Tigger5 DNA MER2_type 0 2323 2232 364 132 19 0 chr11 131121409 131121462 -19662091 - Tigger5 DNA MER2_type -2269 54 1 610 191 143 63 chr11 131121468 131121657 -19661896 - MER58 DNA MER1_type -2208 212 9 956 172 13 0 chr11 131121773 131121930 -19661623 - AluJo SINE Alu -17 295 137 455 181 118 21 chr11 131121942 131122086 -19661467 + L2 LINE L2 3156 3313 0 28 0 0 0 chr11 131122399 131122427 -19661126 + AT_rich Low_complexity Low_complexity 1 28 0 1787 159 40 10 chr11 131122427 131122729 -19660824 - AluJb SINE Alu -1 311 1 617 189 47 16 chr11 131122749 131122876 -19660677 - AluJo SINE Alu -171 131 1 735 143 109 0 chr11 131122959 131123078 -19660475 + FLAM_C SINE Alu 2 133 -10 2219 116 0 3 chr11 131123085 131123377 -19660176 - AluSg SINE Alu -18 292 2 2094 96 43 26 chr11 131123998 131124301 -19659252 - AluSx SINE Alu -4 308 1 315 262 109 51 chr11 131124309 131124566 -19658987 - L2 LINE L2 -243 3070 2793 273 278 86 33 chr11 131124611 131124762 -19658791 - L2 LINE L2 -712 2602 2444 2632 146 64 36 chr11 131124763 131125141 -19658412 - L1MB4 LINE L1 0 6180 5781 2311 88 0 7 chr11 131125141 131125436 -19658117 - AluSc SINE Alu -16 293 1 2632 146 64 36 chr11 131125436 131125586 -19657967 - L1MB4 LINE L1 -399 5781 5637 1858 159 0 14 chr11 131125767 131125929 -19657624 - AluJb SINE Alu -17 295 137 2480 70 0 7 chr11 131125929 131126227 -19657326 - AluSx SINE Alu -16 296 1 1858 159 0 14 chr11 131126227 131126360 -19657193 - AluJb SINE Alu -175 137 4 304 267 46 23 chr11 131126442 131126573 -19656980 - MIR SINE MIR -27 235 102 1444 106 0 15 chr11 131127328 131127526 -19656027 - AluSx SINE Alu -117 195 1 772 192 0 0 chr11 131127529 131127659 -19655894 - AluJo/FLAM SINE Alu -169 133 4 304 267 46 23 chr11 131127741 131127872 -19655681 - MIR SINE MIR -27 235 102 24 0 0 0 chr11 131129269 131129293 -19654260 + AT_rich Low_complexity Low_complexity 1 24 0 2393 72 3 7 chr11 131129524 131129817 -19653736 - AluY SINE Alu -15 296 5 2204 114 3 7 chr11 131129821 131130118 -19653435 - AluSx SINE Alu -16 296 1 24 0 0 0 chr11 131130250 131130274 -19653279 + AT_rich Low_complexity Low_complexity 1 24 0 380 151 0 0 chr11 131130663 131130739 -19652814 + AluJ/FRAM SINE Alu 232 307 0 1631 172 14 27 chr11 131130766 131131062 -19652491 - AluJo SINE Alu -20 292 1 2577 67 0 3 chr11 131131191 131131503 -19652050 - AluY SINE Alu 0 311 1 360 214 17 144 chr11 131131894 131132067 -19651486 - L2 LINE L2 0 3313 3163 222 321 0 0 chr11 131132056 131132109 -19651444 + L2 LINE L2 2905 2957 -356 * 459 161 81 0 chr11 131132146 131132233 -19651320 - FAM SINE Alu -18 167 74 239 335 64 23 chr11 131132254 131132427 -19651126 + L2 LINE L2 2956 3135 -178 399 191 157 0 chr11 131132551 131132640 -19650913 + MLT1L LTR MaLR 106 208 -407 2201 95 3 17 chr11 131132650 131132945 -19650608 + AluSx SINE Alu 22 312 0 1019 174 11 0 chr11 131133087 131133271 -19650282 + AluSg/x SINE Alu 119 304 -6 875 290 20 0 chr11 131133321 131133566 -19649987 - MIR SINE MIR -8 254 5 21 0 0 0 chr11 131133634 131133655 -19649898 + AT_rich Low_complexity Low_complexity 1 21 0 714 163 8 8 chr11 131133710 131133833 -19649720 - FLAM_C SINE Alu -18 125 3 1714 160 0 10 chr11 131133854 131134148 -19649405 - AluSc SINE Alu -18 291 1 357 244 23 0 chr11 131134157 131134243 -19649310 + MIR SINE MIR 48 135 -127 223 368 38 0 chr11 131134461 131134567 -19648986 + MIR SINE MIR 34 143 -65 2888 190 71 20 chr11 131134610 131134702 -19648851 - L1MB7 LINE L1 -23 6161 6075 586 222 8 0 chr11 131134702 131134828 -19648725 - FLAM_A SINE Alu -6 127 1 2888 190 71 20 chr11 131134828 131135515 -19648038 - L1MB7 LINE L1 -109 6075 5294 306 109 3 129 chr11 131135535 131135596 -19647957 - L1MB7 LINE L1 -838 5308 5281 2318 84 7 7 chr11 131135596 131135894 -19647659 + AluSx SINE Alu 1 298 -14 306 109 3 129 chr11 131135894 131135925 -19647628 - L1MB7 LINE L1 -865 5281 5248 198 0 0 0 chr11 131136247 131136269 -19647284 + (T)n Simple_repeat Simple_repeat 1 22 0 256 336 110 14 chr11 131136542 131136688 -19646865 + MIR3 SINE MIR 43 202 -6 234 0 0 0 chr11 131137263 131137289 -19646264 + (CA)n Simple_repeat Simple_repeat 2 27 0 2245 105 3 0 chr11 131137423 131137728 -19645825 + AluY SINE Alu 1 306 -5 1088 146 0 0 chr11 131137784 131137942 -19645611 + FAM SINE Alu 15 172 -13 310 302 50 56 chr11 131138115 131138294 -19645259 + L1MC4 LINE L1 7864 8041 -1 304 267 46 23 chr11 131141416 131141547 -19642006 + MIR SINE MIR 102 235 -27 1858 159 0 14 chr11 131141629 131141762 -19641791 + AluJb SINE Alu 4 137 -175 2291 84 3 10 chr11 131141762 131142060 -19641493 + AluSx SINE Alu 1 296 -16 1858 159 0 14 chr11 131142060 131142222 -19641331 + AluJb SINE Alu 137 295 -17 824 160 7 20 chr11 131142403 131142553 -19641000 + L1MB8 LINE L1 5637 5784 -396 2081 108 38 0 chr11 131142553 131142841 -19640712 + AluSx SINE Alu 1 299 -13 251 143 102 0 chr11 131142841 131142890 -19640663 + L1MB8 LINE L1 6009 6062 -116 2040 106 7 20 chr11 131142943 131143245 -19640308 - AluSx SINE Alu -14 298 1 573 274 54 54 chr11 131143499 131143758 -19639795 + MIR SINE MIR 2 260 -2 2379 70 0 3 chr11 131143895 131144218 -19639335 - AluSg SINE Alu 0 322 1 1542 158 0 81 chr11 131144252 131144562 -19638991 - AluJb SINE Alu -27 285 1 325 114 35 167 chr11 131144772 131144812 -19638741 + MER53 DNA DNA 12 56 -133 2558 35 0 3 chr11 131144812 131145102 -19638451 - AluY SINE Alu -22 289 1 325 114 35 167 chr11 131145102 131145175 -19638378 + MER53 DNA DNA 56 110 -79 290 235 88 88 chr11 131146888 131146908 -19636645 - L2 LINE L2 0 3272 3253 853 156 0 15 chr11 131146908 131147043 -19636510 - FLAM_C SINE Alu 0 133 1 290 235 88 88 chr11 131147043 131147158 -19636395 - L2 LINE L2 -18 3254 3137 234 0 0 0 chr11 131147256 131147282 -19636271 + (T)n Simple_repeat Simple_repeat 1 26 0 459 125 14 0 chr11 131147433 131147505 -19636048 - AluJ/FLAM SINE Alu -238 74 2 186 167 28 0 chr11 131147608 131147644 -19635909 - MIR SINE MIR -135 73 37 210 275 113 49 chr11 131148082 131148224 -19635329 + MER5B DNA MER1_type 1 151 -27 1474 71 0 6 chr11 131148468 131148651 -19634902 + AluSq SINE Alu 1 182 -131 301 156 0 0 chr11 131148651 131148696 -19634857 - Alu SINE Alu -257 45 1 2128 118 16 7 chr11 131148698 131149002 -19634551 - AluSx SINE Alu -5 307 1 2281 97 0 10 chr11 131149022 131149321 -19634232 - AluSg SINE Alu -14 296 1 207 69 0 0 chr11 131150639 131150668 -19632885 + (ATG)n Simple_repeat Simple_repeat 2 30 0 1903 149 0 36 chr11 131151005 131151128 -19632425 + AluJo SINE Alu 1 127 -185 2598 47 0 7 chr11 131151128 131151426 -19632127 - AluY SINE Alu -15 296 1 1903 149 0 36 chr11 131151426 131151604 -19631949 + AluJo SINE Alu 127 291 -21 27 0 0 0 chr11 131151604 131151631 -19631922 + AT_rich Low_complexity Low_complexity 1 27 0 2322 99 0 3 chr11 131151702 131151996 -19631557 - AluSx SINE Alu -19 293 1 1676 113 12 41 chr11 131153279 131153598 -19629955 + AluY SINE Alu 1 310 -1 332 101 72 0 chr11 131153623 131153692 -19629861 - MSTC LTR MaLR 0 428 355 335 118 0 0 chr11 131153700 131153751 -19629802 - L1PA16 LINE L1 -10 6156 6106 847 82 117 158 chr11 131153752 131153883 -19629670 - L1PA16 LINE L1 -102 6064 5942 1842 141 7 0 chr11 131153883 131154167 -19629386 - AluJb SINE Alu -26 286 1 847 82 117 158 chr11 131154167 131154231 -19629322 - L1PA16 LINE L1 -224 5942 5877 2202 144 26 9 chr11 131154231 131154578 -19628975 - MSTC LTR MaLR -75 353 1 830 141 0 49 chr11 131154599 131154741 -19628812 + AluJo SINE Alu 2 136 -176 2059 130 0 0 chr11 131154744 131155052 -19628501 + AluSx SINE Alu 3 310 -2 1585 116 0 13 chr11 131155071 131155303 -19628250 + AluSc SINE Alu 1 229 -80 2107 94 10 3 chr11 131155610 131155898 -19627655 - AluSq SINE Alu -23 290 1 1754 142 10 14 chr11 131155921 131156216 -19627337 - AluSg SINE Alu -16 294 1 292 246 0 0 chr11 131156216 131156281 -19627272 + LTR33A LTR ERVL 459 523 0 243 169 286 0 chr11 131156282 131156359 -19627194 + L2 LINE L2 2526 2624 -690 2044 127 24 96 chr11 131158063 131158327 -19625226 + MLT1B LTR MaLR 2 227 -163 1628 144 40 4 chr11 131158327 131158604 -19624949 + AluJb SINE Alu 5 291 -21 2044 127 24 96 chr11 131158604 131158758 -19624795 + MLT1B LTR MaLR 227 390 0 319 271 73 62 chr11 131159029 131159221 -19624332 - L1MC4a LINE L1 -1861 5947 5754 495 283 87 0 chr11 131159313 131159486 -19624067 - L2 LINE L2 -84 3229 3042 2028 102 0 11 chr11 131159536 131159819 -19623734 - AluSx SINE Alu -21 291 12 25 0 0 0 chr11 131161557 131161582 -19621971 + AT_rich Low_complexity Low_complexity 1 25 0 206 363 0 24 chr11 131162448 131162591 -19620962 + MIR SINE MIR 17 154 -54 737 217 46 32 chr11 131162611 131162828 -19620725 + L1MB7 LINE L1 5965 6184 0 1491 101 135 22 chr11 131162893 131163180 -19620373 - AluSp SINE Alu 0 317 1 263 292 106 43 chr11 131163405 131163566 -19619987 - MER5B DNA MER1_type -7 171 1 1029 153 11 37 chr11 131163985 131164175 -19619378 - AluJo SINE Alu -127 185 1 200 167 28 0 chr11 131164278 131164314 -19619239 - MIR SINE MIR -135 73 37 263 292 106 43 chr11 131164752 131164913 -19618640 + MER5B DNA MER1_type 1 171 -7 1391 71 0 6 chr11 131165138 131165321 -19618232 + AluSq SINE Alu 1 182 -131 289 156 0 0 chr11 131165321 131165366 -19618187 - Alu SINE Alu -257 45 1 1944 121 16 10 chr11 131165368 131165673 -19617880 - AluSx SINE Alu -5 307 1 2155 97 0 10 chr11 131165693 131165992 -19617561 - AluSg SINE Alu -14 296 1 207 69 0 0 chr11 131167310 131167339 -19616214 + (ATG)n Simple_repeat Simple_repeat 2 30 0 1783 149 0 36 chr11 131167676 131167799 -19615754 + AluJo SINE Alu 1 127 -185 2461 47 0 7 chr11 131167799 131168097 -19615456 - AluY SINE Alu -15 296 1 1783 149 0 36 chr11 131168097 131168275 -19615278 + AluJo SINE Alu 127 291 -21 27 0 0 0 chr11 131168275 131168302 -19615251 + AT_rich Low_complexity Low_complexity 1 27 0 1137 131 6 0 chr11 131168373 131168548 -19615005 - AluSg/x SINE Alu -19 291 116 25 0 0 0 chr11 131168554 131168579 -19614974 + AT_rich Low_complexity Low_complexity 1 25 0 1782 129 0 30 chr11 131168580 131168875 -19614678 - AluSx SINE Alu -26 286 1 517 272 107 0 chr11 131168880 131169049 -19614504 + MIR SINE MIR 65 251 -11 2186 85 0 3 chr11 131169420 131169713 -19613840 - AluSc SINE Alu -14 295 4 1840 126 0 7 chr11 131169804 131170081 -19613472 - AluSx SINE Alu -37 275 1 228 222 0 48 chr11 131170089 131170152 -19613401 - FLAM SINE Alu 0 133 74 1430 132 45 0 chr11 131170559 131170779 -19612774 + MER30 DNA MER1_type 1 230 0 861 120 19 70 chr11 131170874 131171031 -19612522 + LTR39 LTR ERV1 1 149 -634 700 132 104 176 chr11 131171031 131171411 -19612142 + MER4C LTR ERV1 1 195 -270 2219 79 0 7 chr11 131171411 131171715 -19611838 - AluSx SINE Alu -10 302 1 700 132 104 176 chr11 131171715 131171801 -19611752 + MER4C LTR ERV1 195 286 -179 2225 101 0 0 chr11 131171849 131172147 -19611406 - AluSg SINE Alu -12 298 1 2896 76 95 0 chr11 131172151 131172560 -19610993 - LTR7 LTR ERV1 -2 448 1 2448 90 48 13 chr11 131172560 131172939 -19610614 - HERVH LTR ERV1 0 7713 7322 1399 118 20 0 chr11 131172937 131173141 -19610412 - HERVH LTR ERV1 -1894 5819 5612 * 4521 137 0 1 chr11 131173156 131173819 -19609734 - HERVH LTR ERV1 -2564 5149 4488 3526 97 4 8 chr11 131173821 131174325 -19609228 - HERVH LTR ERV1 -3720 3993 3492 828 152 41 0 chr11 131174315 131174460 -19609093 - HERVH LTR ERV1 -4423 3290 3140 * 12080 91 14 7 chr11 131174454 131176130 -19607423 - HERVH LTR ERV1 -4726 2987 1301 8357 38 1 0 chr11 131176130 131177098 -19606455 - LTR5 LTR ERVK 0 969 1 432 74 11 168 chr11 131177098 131177193 -19606360 - SVA Other Other -450 936 857 28652 26 2 0 chr11 131177193 131180464 -19603089 - HERVK LTR ERVK -95 7148 3872 1399 96 68 27 chr11 131180464 131180684 -19602869 - AluSp SINE Alu -84 229 1 303 154 0 0 chr11 131180690 131180742 -19602811 - Alu SINE Alu 0 300 249 1303 131 29 33 chr11 131180850 131181094 -19602459 + L1MCa LINE L1 1741 1983 -4443 1057 196 13 27 chr11 131181104 131181328 -19602225 - MER46A DNA MER2_type -15 221 1 759 129 50 0 chr11 131181360 131181499 -19602054 + L1MCa LINE L1 2057 2202 -4224 2137 109 0 25 chr11 131181522 131181843 -19601710 + AluSq SINE Alu 1 313 0 2131 99 3 3 chr11 131182263 131182555 -19600998 - AluSq SINE Alu -15 298 7 992 79 7 7 chr11 131182556 131182695 -19600858 - AluSq/x SINE Alu -174 139 1 386 247 31 21 chr11 131182697 131182794 -19600759 - MIR SINE MIR -71 191 94 1276 101 5 5 chr11 131183298 131183486 -19600067 - AluSq SINE Alu -124 189 2 997 251 28 39 chr11 131183494 131183777 -19599776 + MER69 DNA AcHobo 295 574 -1952 792 111 8 17 chr11 131183780 131183897 -19599656 + FLAM_C SINE Alu 14 129 -14 2132 113 3 0 chr11 131183902 131184204 -19599349 + AluSp SINE Alu 1 303 -10 2178 111 7 0 chr11 131184406 131184712 -19598841 - AluSx SINE Alu -4 308 1 1331 256 71 4 chr11 131184745 131185308 -19598245 - ERVL LTR ERVL -280 5484 4829 679 268 0 0 chr11 131185312 131185450 -19598103 - ERVL LTR ERVL -2305 3459 3322 1992 110 17 7 chr11 131185452 131185752 -19597801 + AluSx SINE Alu 1 303 -9 2200 103 0 10 chr11 131185762 131186072 -19597481 + AluSx SINE Alu 2 308 -4 24 53 0 0 chr11 131186184 131186222 -19597331 + GC_rich Low_complexity Low_complexity 1 38 0 738 106 18 0 chr11 131186223 131186336 -19597217 - AluJb SINE Alu -5 307 193 3550 110 52 56 chr11 131186336 131186862 -19596691 - MER41B LTR ERV1 0 635 108 2201 76 10 3 chr11 131186862 131187152 -19596401 + AluSq SINE Alu 1 292 -21 3550 110 52 56 chr11 131187152 131187226 -19596327 - MER41B LTR ERV1 -527 108 36 2138 112 0 3 chr11 131187226 131187531 -19596022 + AluSg SINE Alu 1 304 -6 3550 110 52 56 chr11 131187531 131187567 -19595986 - MER41B LTR ERV1 -599 36 1 1414 167 11 30 chr11 131187569 131187839 -19595714 + AluJo SINE Alu 39 303 -9 471 36 0 0 chr11 131187929 131187985 -19595568 - MER4B LTR ERV1 0 610 555 2230 94 0 13 chr11 131187986 131188294 -19595259 + AluSc SINE Alu 2 305 -4 267 293 125 32 chr11 131188660 131188940 -19594613 - L1ME4a LINE L1 -182 5939 5634 2051 115 7 3 chr11 131188950 131189246 -19594307 + AluSg SINE Alu 1 297 -13 1912 184 112 3 chr11 131189321 131189697 -19593856 - MER47B DNA MER2_type -1 417 1 519 195 0 0 chr11 131190404 131190491 -19593062 - Tigger3(Golem) DNA MER2_type -2941 88 2 945 89 0 0 chr11 131190512 131190635 -19592918 + AluSq/x SINE Alu 1 123 -189 207 0 0 0 chr11 131190739 131190762 -19592791 + (A)n Simple_repeat Simple_repeat 1 23 0 784 206 13 0 chr11 131190771 131190926 -19592627 - MER4C LTR ERV1 -8 457 301 2862 88 93 0 chr11 131190933 131191342 -19592211 + LTR7 LTR ERV1 2 448 -2 8397 88 51 23 chr11 131191344 131192613 -19590940 + HERVH LTR ERV1 1 1305 -6408 8343 39 1 0 chr11 131192613 131193581 -19589972 + LTR5 LTR ERVK 1 969 0 62003 30 3 0 chr11 131193581 131200710 -19582843 + HERVK LTR ERVK 1 7148 -95 432 74 11 168 chr11 131200710 131200805 -19582748 + SVA Other Other 857 936 -450 8382 35 2 0 chr11 131200805 131201772 -19581781 + LTR5 LTR ERVK 1 969 0 12041 91 14 7 chr11 131201772 131203447 -19580106 + HERVH LTR ERV1 1301 2987 -4726 903 142 20 0 chr11 131203441 131203589 -19579964 + HERVH LTR ERV1 3140 3290 -4423 * 3390 95 4 8 chr11 131203579 131204083 -19579470 + HERVH LTR ERV1 3492 3993 -3720 4310 140 0 1 chr11 131204085 131204748 -19578805 + HERVH LTR ERV1 4488 5149 -2564 1338 118 20 0 chr11 131204763 131204967 -19578586 + HERVH LTR ERV1 5612 5819 -1894 * 2321 90 48 13 chr11 131204965 131205344 -19578209 + HERVH LTR ERV1 7322 7713 0 2703 91 95 0 chr11 131205344 131205753 -19577800 + LTR7 LTR ERV1 1 448 -2 2380 106 0 0 chr11 131205757 131206060 -19577493 + AluSg SINE Alu 1 303 -7 2130 103 57 0 chr11 131206191 131206472 -19577081 + AluSx SINE Alu 1 297 -15 6374 90 12 19 chr11 131206472 131207547 -19576006 + L1MA3 LINE L1 5274 6305 0 546 276 11 91 chr11 131207636 131207900 -19575653 - MER21B LTR ERV1 -615 248 6 2814 208 9 35 chr11 131208201 131208835 -19574718 - MER21B-int LTR ERV1 -58 4133 3516 4993 80 17 34 chr11 131208835 131209652 -19573901 + L1M1 LINE L1 2242 3044 -4521 2165 106 17 10 chr11 131209652 131209953 -19573600 + AluSx SINE Alu 1 303 -9 2322 103 0 13 chr11 131209963 131210274 -19573279 + AluSx SINE Alu 2 308 -4 360 0 0 0 chr11 131212753 131212793 -19570760 + (TG)n Simple_repeat Simple_repeat 1 40 0 2286 96 0 0 chr11 131212793 131213074 -19570479 - AluSx SINE Alu -31 281 1 397 270 42 26 chr11 131213121 131213283 -19570270 - MIR3 SINE MIR -62 146 11 267 152 0 0 chr11 131213444 131213490 -19570063 + T-rich Low_complexity Low_complexity 1 46 0 2423 83 17 0 chr11 131213673 131213975 -19569578 - AluSq SINE Alu -6 307 1 2451 88 0 0 chr11 131214275 131214571 -19568982 + AluSq SINE Alu 5 300 -13 2495 89 0 0 chr11 131214571 131214874 -19568679 + AluSq SINE Alu 1 304 -9 3401 94 6 10 chr11 131214928 131215430 -19568123 + L1PA14 LINE L1 5662 6161 0 2827 204 55 9 chr11 131215431 131216107 -19567446 + L1MC4 LINE L1 6685 7486 -509 375 241 56 2 chr11 131216172 131216291 -19567262 + L1MC4 LINE L1 7284 7474 -402 2306 97 0 7 chr11 131216327 131216626 -19566927 + AluY SINE Alu 7 303 -8 365 173 13 0 chr11 131216673 131216748 -19566805 + L1MB7 LINE L1 6039 6114 -70 1898 136 21 11 chr11 131216754 131217041 -19566512 + AluSx SINE Alu 7 296 -16 2460 89 0 6 chr11 131217051 131217365 -19566188 + AluSq SINE Alu 2 313 0 321 191 143 24 chr11 131217840 131217924 -19565629 - LTR33 LTR ERVL 0 521 428 248 252 46 3 chr11 131218099 131218248 -19565305 - LTR33 LTR ERVL -315 206 10 1285 181 142 0 chr11 131218454 131218708 -19564845 - AluSg SINE Alu -20 290 1 1591 218 20 34 chr11 131218716 131219074 -19564479 + MLT1A1 LTR MaLR 11 363 -2 1365 321 69 11 chr11 131219132 131219292 -19564261 - ERVL LTR ERVL -384 5380 5231 786 262 47 76 chr11 131219292 131219700 -19563853 + MSTD LTR MaLR 1 396 0 1365 321 69 11 chr11 131219700 131220024 -19563529 - ERVL LTR ERVL -533 5231 4849 2809 121 52 4 chr11 131220024 131220488 -19563065 + LTR19A LTR ERV1 1 486 0 1365 321 69 11 chr11 131220488 131220629 -19562924 - ERVL LTR ERVL -915 4849 4718 484 276 35 14 chr11 131220664 131220809 -19562744 - ERVL LTR ERVL -3668 2096 1949 456 178 246 0 chr11 131220812 131220930 -19562623 + MER69 DNA AcHobo 1 147 -2379 2208 117 7 7 chr11 131220940 131221248 -19562305 - AluSp SINE Alu -1 312 5 804 164 119 0 chr11 131221257 131221416 -19562137 - AluJo/FRAM SINE Alu -1 311 134 2084 132 7 3 chr11 131221416 131221719 -19561834 - AluSp SINE Alu -9 304 1 401 270 63 0 chr11 131221794 131221905 -19561648 - MIR SINE MIR -121 141 24 2219 113 0 3 chr11 131221905 131222196 -19561357 - AluSx SINE Alu -22 290 1 724 233 47 66 chr11 131222196 131222433 -19561120 - MER21-int LTR ERV1 -618 3573 3305 2269 121 0 0 chr11 131222433 131222730 -19560823 - AluSq SINE Alu -16 297 1 724 233 47 66 chr11 131222730 131222858 -19560695 - MER21-int LTR ERV1 -886 3305 3176 509 296 0 25 chr11 131222884 131223043 -19560510 - MER21-int LTR ERV1 -1012 3179 3025 * 2384 201 73 55 chr11 131223042 131223675 -19559878 - MER21-int LTR ERV1 -1533 2658 2015 2396 88 0 0 chr11 131223790 131224085 -19559468 - AluY SINE Alu -16 295 1 288 299 121 32 chr11 131224095 131224376 -19559177 + L1ME4a LINE L1 5634 5939 -182 2063 107 0 52 chr11 131224744 131225072 -19558481 - AluY SINE Alu 0 311 1 1807 184 112 3 chr11 131225933 131226309 -19557244 + MER47B DNA MER2_type 1 417 -1 2071 124 7 7 chr11 131226369 131226680 -19556873 - AluSg SINE Alu 0 311 1 314 296 55 55 chr11 131226775 131226974 -19556579 + L2 LINE L2 3102 3300 -13 232 0 0 0 chr11 131227134 131227163 -19556390 + AluSx SINE Alu 1 29 -272 1770 137 6 54 chr11 131227462 131227776 -19555777 + AluSx SINE Alu 14 312 0 2257 102 0 7 chr11 131227850 131228144 -19555409 + AluSc SINE Alu 1 292 -17 231 301 87 48 chr11 131228183 131228286 -19555267 - L3 LINE CR1 -1436 141 35 1901 154 13 7 chr11 131228459 131228758 -19554795 - AluJo SINE Alu -11 301 1 1643 147 45 14 chr11 131228790 131229076 -19554477 + AluSg SINE Alu 1 295 -15 1288 109 5 21 chr11 131229579 131229772 -19553781 - AluSx SINE Alu -100 212 23 1926 131 17 0 chr11 131229788 131230078 -19553475 - AluSx SINE Alu -17 295 1 508 139 0 0 chr11 131230104 131230183 -19553370 + AluJ/FLAM SINE Alu 1 79 -233 280 206 0 87 chr11 131230191 131230283 -19553270 - Charlie8 DNA MER1_type -2301 116 33 254 175 0 0 chr11 131230659 131230699 -19552854 + MER2 DNA MER2_type 2 41 -304 211 258 0 61 chr11 131230725 131230791 -19552762 - MIR SINE MIR -88 174 113 403 209 7 4 chr11 131230813 131230965 -19552588 + MER20 DNA MER1_type 6 214 -5 2311 97 3 3 chr11 131231107 131231405 -19552148 + AluSx SINE Alu 1 298 -14 2273 118 0 25 chr11 131231707 131232028 -19551525 - AluSq SINE Alu 0 313 1 192 77 0 0 chr11 131233350 131233376 -19550177 + (T)n Simple_repeat Simple_repeat 1 26 0 2483 81 3 3 chr11 131233494 131233802 -19549751 - AluSx SINE Alu -4 308 1 1814 107 85 7 chr11 131233804 131234075 -19549478 - AluSx SINE Alu -20 292 1 417 216 99 36 chr11 131234205 131234316 -19549237 - MIR SINE MIR -55 153 36 480 200 11 0 chr11 131236136 131236231 -19547322 - MIR SINE MIR -75 133 38 264 167 0 0 chr11 131241083 131241131 -19542422 + (TGG)n Simple_repeat Simple_repeat 3 50 0 210 283 0 50 chr11 131241797 131241896 -19541657 + CT-rich Low_complexity Low_complexity 5 98 0 22 35 0 0 chr11 131242381 131242410 -19541143 + GC_rich Low_complexity Low_complexity 1 29 0 344 291 179 7 chr11 131242933 131243084 -19540469 + MIR SINE MIR 86 262 0 544 335 31 13 chr11 131243843 131244070 -19539483 - MIR SINE MIR -30 232 2 475 315 105 5 chr11 131244404 131244623 -19538930 + MIR SINE MIR 10 250 -12 2058 140 0 13 chr11 131244658 131244966 -19538587 - AluSq SINE Alu -9 304 1 369 311 86 50 chr11 131245175 131245688 -19537865 - L2 LINE L2 -38 3234 2689 201 39 0 0 chr11 131247072 131247098 -19536455 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 186 304 96 52 chr11 131247689 131247804 -19535749 - L2 LINE L2 -5 3267 3148 201 147 0 0 chr11 131249369 131249403 -19534150 + (TTCC)n Simple_repeat Simple_repeat 2 35 0 196 224 0 35 chr11 131249443 131249528 -19534025 + CT-rich Low_complexity Low_complexity 1 82 0 558 303 63 5 chr11 131250452 131250673 -19532880 - MIR SINE MIR -27 235 2 * 622 199 0 60 chr11 131250673 131250812 -19532741 - MIR3 SINE MIR -30 178 49 191 125 25 0 chr11 131251179 131251219 -19532334 + CT-rich Low_complexity Low_complexity 1 41 0 2540 57 0 0 chr11 131253299 131253598 -19529955 + AluY SINE Alu 1 299 -12 234 0 0 0 chr11 131253772 131253798 -19529755 + (A)n Simple_repeat Simple_repeat 1 26 0 347 300 45 93 chr11 131254804 131254944 -19528609 - MIR SINE MIR -13 249 125 1856 81 13 8 chr11 131254944 131255179 -19528374 + AluSq SINE Alu 1 236 -77 347 300 45 93 chr11 131255179 131255285 -19528268 - MIR SINE MIR -137 125 15 534 16 0 0 chr11 131255779 131255842 -19527711 + (TG)n Simple_repeat Simple_repeat 1 63 0 2123 146 0 7 chr11 131256507 131256816 -19526737 + AluSx SINE Alu 1 307 -5 443 261 0 17 chr11 131257096 131257215 -19526338 - MIR3 SINE MIR -7 201 85 200 283 0 0 chr11 131257347 131257393 -19526160 - MIR SINE MIR -124 138 93 183 42 0 0 chr11 131258237 131258261 -19525292 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 344 248 129 0 chr11 131258267 131258368 -19525185 - L2 LINE L2 -21 3292 3179 382 284 76 109 chr11 131258661 131258718 -19524835 - MLT1I LTR MaLR -6 403 346 2065 148 3 0 chr11 131258718 131259016 -19524537 + AluSx SINE Alu 1 299 -13 2453 86 0 3 chr11 131259016 131259317 -19524236 + AluSc SINE Alu 1 300 -9 382 284 76 109 chr11 131259317 131259652 -19523901 - MLT1I LTR MaLR -61 348 23 261 257 95 0 chr11 131259846 131259920 -19523633 - L2 LINE L2 -924 2390 2310 1006 228 18 0 chr11 131259978 131260206 -19523347 - MIR SINE MIR 0 262 31 211 170 0 38 chr11 131260257 131260310 -19523243 + GA-rich Low_complexity Low_complexity 1 51 0 290 259 12 24 chr11 131261004 131261089 -19522464 - MIR SINE MIR -30 232 149 195 167 191 0 chr11 131261212 131261254 -19522299 - L2 LINE L2 0 3313 3264 22 0 0 0 chr11 131261943 131261965 -19521588 + AT_rich Low_complexity Low_complexity 1 22 0 1291 232 80 89 chr11 131261986 131262220 -19521333 - L1MC4a LINE L1 -1773 6035 5800 2489 99 0 0 chr11 131262220 131262533 -19521020 - AluSq SINE Alu 0 313 1 1291 232 80 89 chr11 131262533 131262970 -19520583 - L1MC4a LINE L1 -2008 5800 5370 347 314 142 30 chr11 131267488 131267819 -19515734 + MER115 DNA AcHobo 1 368 -325 219 69 0 0 chr11 131271078 131271107 -19512446 + (TG)n Simple_repeat Simple_repeat 2 30 0 2503 212 66 76 chr11 131271263 131272035 -19511518 + MER21-int LTR ERV1 1895 2658 -1533 * 3675 211 56 81 chr11 131272034 131272347 -19511206 + MER21-int LTR ERV1 3025 3344 -847 2269 121 0 0 chr11 131272347 131272644 -19510909 + AluSq SINE Alu 1 297 -16 3675 211 56 81 chr11 131272644 131272878 -19510675 + MER21-int LTR ERV1 3344 3582 -609 2517 66 0 3 chr11 131272878 131273183 -19510370 + AluY SINE Alu 1 304 -7 3675 211 56 81 chr11 131273183 131273476 -19510077 + MER21-int LTR ERV1 3582 3833 -358 2079 131 14 3 chr11 131273476 131273773 -19509780 + AluSg SINE Alu 1 300 -10 3675 211 56 81 chr11 131273773 131274059 -19509494 + MER21-int LTR ERV1 3833 4125 -66 2448 100 3 0 chr11 131274391 131274702 -19508851 - AluSp SINE Alu -1 312 1 1724 164 0 72 chr11 131274704 131275022 -19508531 - AluJb SINE Alu -17 295 1 2220 102 3 7 chr11 131275390 131275685 -19507868 - AluSx SINE Alu -18 294 1 734 183 0 26 chr11 131275735 131275888 -19507665 + L1 LINE L1 3607 3755 -2391 1280 122 50 36 chr11 131275888 131276109 -19507444 + AluJb SINE Alu 89 312 0 669 89 9 9 chr11 131276266 131276378 -19507175 + L1M1 LINE L1 3029 3140 -4425 2905 230 104 32 chr11 131276449 131277323 -19506230 - MER21B-int LTR ERV1 -739 3452 2516 2471 231 38 38 chr11 131277316 131278067 -19505486 - MER21B-int LTR ERV1 -1487 5271 4522 * 2309 84 3 3 chr11 131278067 131278375 -19505178 - AluSp SINE Alu 0 308 1 2471 231 38 38 chr11 131278375 131278398 -19505155 - MER21B-int LTR ERV1 -2236 4522 1923 1261 209 47 22 chr11 131278474 131278795 -19504758 - MER21B-int LTR ERV1 -3844 347 19 1441 226 53 105 chr11 131278804 131279226 -19504327 - MER21B LTR ERV1 -124 739 359 2128 152 0 3 chr11 131279226 131279536 -19504017 - AluSx SINE Alu -3 309 1 1441 226 53 105 chr11 131279536 131279740 -19503813 - MER21B LTR ERV1 -504 359 146 1377 142 9 27 chr11 131279812 131280019 -19503534 + AluJb SINE Alu 87 291 -21 2425 113 0 0 chr11 131280019 131280329 -19503224 + AluSx SINE Alu 1 310 -2 1377 142 9 27 chr11 131280329 131280340 -19503213 + AluJb SINE Alu 291 301 -11 239 265 3 0 chr11 131280367 131280439 -19503114 - MER77 LTR ERV1 -471 134 22 2519 208 53 21 chr11 131280475 131280977 -19502576 + MER77 LTR ERV1 9 533 -72 2333 103 0 3 chr11 131280977 131281278 -19502275 + AluSc SINE Alu 1 300 -9 2519 208 53 21 chr11 131281278 131281343 -19502210 + MER77 LTR ERV1 533 594 -11 193 380 80 0 chr11 131281422 131281646 -19501907 + L2 LINE L2 2418 2659 -655 * 310 257 149 33 chr11 131281613 131281827 -19501726 + L2 LINE L2 2848 3086 -227 2192 95 3 7 chr11 131281890 131282197 -19501356 - AluSq SINE Alu 0 306 1 192 260 94 42 chr11 131282336 131282432 -19501121 - MIR SINE MIR -74 134 33 875 198 171 0 chr11 131282632 131282884 -19500669 + AluSx SINE Alu 5 299 -3 233 228 0 18 chr11 131282929 131282986 -19500567 + CT-rich Low_complexity Low_complexity 5 60 0 2446 76 0 0 chr11 131283717 131284007 -19499546 - AluSc SINE Alu -14 295 6 2452 88 3 3 chr11 131284282 131284588 -19498965 + AluSx SINE Alu 1 306 -6 223 188 78 16 chr11 131284752 131284816 -19498737 + MIR SINE MIR 74 141 -67 2349 63 11 7 chr11 131285264 131285575 -19497978 - AluSp SINE Alu 0 312 1 1265 101 12 0 chr11 131288143 131288311 -19495242 + AluSg/x SINE Alu 120 289 -21 2149 120 3 0 chr11 131288706 131289022 -19494531 - AluSx SINE Alu 0 317 1 249 108 0 0 chr11 131290551 131290588 -19492965 + (T)n Simple_repeat Simple_repeat 1 37 0 1303 135 5 0 chr11 131290740 131290933 -19492620 - AluSg/x SINE Alu -4 306 113 2027 133 40 0 chr11 131290997 131291297 -19492256 + AluSx SINE Alu 1 312 0 2371 112 3 0 chr11 131291338 131291650 -19491903 + AluSq SINE Alu 1 313 0 936 190 6 40 chr11 131291830 131291849 -19491704 + AluJb SINE Alu 120 138 -174 2092 117 25 3 chr11 131291849 131292132 -19491421 + AluSg SINE Alu 1 289 -21 2280 99 0 35 chr11 131292132 131292445 -19491108 + AluSc SINE Alu 1 302 -7 936 190 6 40 chr11 131292445 131292598 -19490955 + AluJb SINE Alu 136 287 -25 2782 131 15 29 chr11 131292696 131292813 -19490740 - MER41B LTR ERV1 0 635 518 2279 69 52 0 chr11 131292813 131293104 -19490449 + AluY SINE Alu 1 306 -5 2782 131 15 29 chr11 131293104 131293466 -19490087 - MER41B LTR ERV1 -117 518 163 1307 95 9 29 chr11 131293704 131293914 -19489639 + MER41B LTR ERV1 1 206 -429 1125 120 0 49 chr11 131293949 131294132 -19489421 - AluSg/x SINE Alu 0 312 139 329 104 0 0 chr11 131294132 131294180 -19489373 - MER41B LTR ERV1 -543 92 45 790 223 12 0 chr11 131294274 131294440 -19489113 - LTR39 LTR ERV1 0 783 616 2297 98 3 0 chr11 131294440 131294737 -19488816 - AluSq SINE Alu -11 302 5 1658 157 68 10 chr11 131294746 131294905 -19488648 - AluSx SINE Alu -1 311 163 2364 93 10 0 chr11 131294905 131295206 -19488347 - AluSp SINE Alu -9 304 1 1658 157 68 10 chr11 131295206 131295340 -19488213 - AluSx SINE Alu -149 163 1 2047 133 3 10 chr11 131295347 131295640 -19487913 - AluSx SINE Alu -21 291 1 1461 232 7 7 chr11 131295644 131295950 -19487603 - AluJo SINE Alu -6 306 1 424 278 107 30 chr11 131295981 131296150 -19487403 + MER69 DNA AcHobo 123 304 -2222 216 0 0 0 chr11 131296151 131296175 -19487378 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1413 108 138 13 chr11 131296183 131296414 -19487139 - AluSg1 SINE Alu -48 261 2 954 261 25 35 chr11 131296422 131296705 -19486848 + MER69 DNA AcHobo 295 574 -1952 825 128 8 0 chr11 131296708 131296825 -19486728 + FLAM_C SINE Alu 14 131 -12 2290 110 3 10 chr11 131296830 131297140 -19486413 + AluSp SINE Alu 1 308 -5 532 146 80 7 chr11 131297166 131297303 -19486250 + MER69 DNA AcHobo 2010 2156 -370 1112 145 120 30 chr11 131297317 131297551 -19486002 - AluJb SINE Alu -23 289 35 207 0 0 0 chr11 131297570 131297593 -19485960 + (T)n Simple_repeat Simple_repeat 1 23 0 1271 153 5 0 chr11 131297752 131297942 -19485611 - AluJb SINE Alu 0 312 122 1669 162 56 11 chr11 131297962 131298126 -19485427 - AluJo SINE Alu -15 297 142 2265 92 0 49 chr11 131298126 131298454 -19485099 - AluSx SINE Alu 0 312 1 2263 119 3 0 chr11 131298455 131298749 -19484804 - AluSq SINE Alu -18 295 1 1669 162 56 11 chr11 131298749 131298866 -19484687 - AluJo SINE Alu -169 143 1 22 0 0 0 chr11 131299053 131299075 -19484478 + AT_rich Low_complexity Low_complexity 1 22 0 2372 65 0 26 chr11 131299087 131299394 -19484159 - AluY SINE Alu -12 299 1 1936 156 0 10 chr11 131299394 131299689 -19483864 - AluJo SINE Alu -20 292 1 254 229 84 24 chr11 131300272 131300355 -19483198 + MIR SINE MIR 102 189 -73 234 0 0 0 chr11 131300360 131300386 -19483167 + (TA)n Simple_repeat Simple_repeat 2 27 0 2194 127 0 7 chr11 131300511 131300818 -19482735 - AluSx SINE Alu -7 305 1 713 195 0 0 chr11 131301956 131302079 -19481474 + AluJb SINE Alu 2 124 -188 286 171 0 43 chr11 131302505 131302575 -19480978 + FLAM SINE Alu 67 133 0 2464 54 0 17 chr11 131302659 131302956 -19480597 - AluY SINE Alu -19 292 1 2210 126 3 7 chr11 131302967 131303276 -19480277 - AluSq SINE Alu -5 308 1 2166 129 26 0 chr11 131303556 131303858 -19479695 + AluSx SINE Alu 1 310 -2 254 313 122 0 chr11 131304600 131304731 -19478822 - MIR SINE MIR -68 194 48 1054 157 92 0 chr11 131304739 131304956 -19478597 + L1MB8 LINE L1 5489 5725 -453 2012 153 67 12 chr11 131305185 131305604 -19477949 + L1MB8 LINE L1 5732 6173 -5 338 266 46 9 chr11 131305963 131306072 -19477481 + LTR67 LTR ERVL 428 540 -17 2166 67 0 11 chr11 131306233 131306541 -19477012 + AluY SINE Alu 1 305 0 210 37 0 0 chr11 131306804 131306831 -19476722 + (A)n Simple_repeat Simple_repeat 1 27 0 827 182 18 12 chr11 131306993 131307163 -19476390 + MER69A DNA AcHobo 4 174 -3 2140 81 24 7 chr11 131307528 131307825 -19475728 + AluSx SINE Alu 1 302 -10 381 273 28 83 chr11 131307975 131308191 -19475362 + L1ME LINE L1 5613 5816 -305 2149 108 0 6 chr11 131308220 131308534 -19475019 + AluSx SINE Alu 1 312 0 1477 198 104 119 chr11 131308584 131309179 -19474374 + MLT1E1 LTR MaLR 21 606 -48 333 209 15 0 chr11 131309405 131309472 -19474081 + MSTC LTR MaLR 1 68 -360 2005 102 0 3 chr11 131309472 131309787 -19473766 - AluSc SINE Alu 0 314 1 447 316 57 10 chr11 131309879 131310088 -19473465 - MLT1K LTR MaLR -6 582 364 515 161 0 0 chr11 131310117 131310204 -19473349 + FLAM_A SINE Alu 41 127 -15 678 146 10 0 chr11 131310238 131310341 -19473212 - U6 snRNA snRNA -3 104 1 180 0 0 0 chr11 131310350 131310370 -19473183 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 278 255 20 71 chr11 131310377 131310475 -19473078 + L2 LINE L2 3206 3298 -15 661 171 98 0 chr11 131310494 131310617 -19472936 + AluJo SINE Alu 2 136 -176 2187 113 0 0 chr11 131310760 131311069 -19472484 + AluSx SINE Alu 1 309 -3 2440 68 0 0 chr11 131311133 131311442 -19472111 + AluY SINE Alu 2 310 -1 754 241 125 97 chr11 131311515 131311582 -19471971 - MLT1G1 LTR MaLR 0 595 531 1781 158 0 7 chr11 131311582 131311905 -19471648 + AluJb SINE Alu 1 321 0 754 241 125 97 chr11 131311905 131312326 -19471227 - MLT1G1 LTR MaLR -64 531 85 1367 147 121 4 chr11 131312326 131312598 -19470955 - AluSx SINE Alu -8 304 1 754 241 125 97 chr11 131312598 131312676 -19470877 - MLT1G1 LTR MaLR -510 85 11 206 176 20 0 chr11 131313187 131313238 -19470315 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 746 93 0 0 chr11 131313270 131313367 -19470186 - AluSg/x SINE Alu -18 294 198 2164 113 0 0 chr11 131313390 131313691 -19469862 + AluSx SINE Alu 1 301 -11 2226 109 0 0 chr11 131313730 131314032 -19469521 + AluSx SINE Alu 1 302 -10 557 124 0 0 chr11 131314032 131314121 -19469432 + L1MB4 LINE L1 6092 6180 0 2191 106 3 0 chr11 131314345 131314648 -19468905 - AluSp SINE Alu -9 304 1 * 2319 90 0 3 chr11 131314647 131314958 -19468595 - AluSp SINE Alu -3 310 1 2085 110 3 3 chr11 131315986 131316278 -19467275 - AluSq SINE Alu -15 298 7 968 86 7 7 chr11 131316279 131316418 -19467135 - AluSq/x SINE Alu -174 139 1 386 247 31 21 chr11 131316420 131316517 -19467036 - MIR SINE MIR -71 191 94 1230 133 0 20 chr11 131317020 131317216 -19466337 - AluSq SINE Alu -119 194 3 2205 94 0 0 chr11 131317252 131317551 -19466002 + AluSx SINE Alu 3 301 -11 606 240 97 94 chr11 131318110 131318493 -19465060 - MLT1J LTR MaLR -19 492 109 840 100 0 0 chr11 131318940 131319050 -19464503 - AluSq/x SINE Alu -203 110 1 231 242 110 11 chr11 131319562 131319657 -19463896 - MIR SINE MIR -48 160 58 221 307 129 14 chr11 131320512 131320652 -19462901 + MIR3 SINE MIR 22 177 -31 190 267 58 35 chr11 131320890 131320976 -19462577 + MIR SINE MIR 47 134 -74 2106 87 3 3 chr11 131321115 131321401 -19462152 + AluSq SINE Alu 1 286 -27 341 242 146 46 chr11 131321477 131321696 -19461857 - L2 LINE L2 -225 3088 2848 341 242 146 46 chr11 131323825 131324044 -19459509 + L2 LINE L2 2848 3088 -225 2106 87 3 3 chr11 131324120 131324406 -19459147 - AluSq SINE Alu -27 286 1 197 270 0 40 chr11 131324545 131324619 -19458934 - MIR SINE MIR -74 134 64 221 307 129 14 chr11 131324869 131325009 -19458544 - MIR3 SINE MIR -31 177 22 231 242 110 11 chr11 131325865 131325960 -19457593 + MIR SINE MIR 58 160 -48 840 100 0 0 chr11 131326472 131326582 -19456971 + AluSq/x SINE Alu 1 110 -202 591 241 99 94 chr11 131327029 131327411 -19456142 + MLT1J LTR MaLR 109 492 -19 2147 97 0 3 chr11 131327970 131328270 -19455283 - AluSx SINE Alu -11 301 3 1285 122 0 20 chr11 131328306 131328502 -19455051 + AluSq SINE Alu 3 194 -119 386 247 31 21 chr11 131329005 131329102 -19454451 + MIR SINE MIR 94 191 -71 968 86 7 7 chr11 131329104 131329243 -19454310 + AluSq/x SINE Alu 1 139 -174 2085 110 3 3 chr11 131329244 131329536 -19454017 + AluSq SINE Alu 7 298 -15 2291 91 0 3 chr11 131330564 131330871 -19452682 + AluSp SINE Alu 1 306 -7 2194 102 3 0 chr11 131330874 131331177 -19452376 + AluSp SINE Alu 1 304 -9 557 124 0 0 chr11 131331402 131331491 -19452062 - L1MB4 LINE L1 0 6180 6092 2235 106 0 0 chr11 131331491 131331793 -19451760 - AluSx SINE Alu -10 302 1 2155 97 0 10 chr11 131331813 131332112 -19451441 - AluSg SINE Alu -14 296 1 207 69 0 0 chr11 131333430 131333459 -19450094 + (ATG)n Simple_repeat Simple_repeat 2 30 0 1783 149 0 36 chr11 131333796 131333919 -19449634 + AluJo SINE Alu 1 127 -185 2461 47 0 7 chr11 131333919 131334217 -19449336 - AluY SINE Alu -15 296 1 1783 149 0 36 chr11 131334217 131334395 -19449158 + AluJo SINE Alu 127 291 -21 27 0 0 0 chr11 131334395 131334422 -19449131 + AT_rich Low_complexity Low_complexity 1 27 0 2220 95 0 3 chr11 131334493 131334787 -19448766 - AluSx SINE Alu -19 293 1 2061 89 0 23 chr11 131336070 131336374 -19447179 + AluY SINE Alu 1 297 -14 862 158 60 5 chr11 131336403 131336968 -19446585 - L1MB7 LINE L1 -1 6183 5443 2200 99 0 3 chr11 131336968 131337271 -19446282 - AluSq SINE Alu -11 302 1 536 188 145 17 chr11 131337279 131337396 -19446157 - FLAM_A SINE Alu -1 132 1 312 325 91 22 chr11 131337403 131337634 -19445919 + L2 LINE L2 1929 2175 -1139 * 486 200 61 52 chr11 131337627 131337742 -19445811 - L2 LINE L2 0 3313 3198 366 224 56 19 chr11 131337767 131337874 -19445679 + L2 LINE L2 2210 2320 -994 711 246 0 6 chr11 131337924 131338095 -19445458 - AluSg/x SINE Alu -9 303 134 2124 95 44 0 chr11 131338095 131338390 -19445163 - AluSx SINE Alu -4 308 1 350 244 148 62 chr11 131338398 131338656 -19444897 - L2 LINE L2 -243 3070 2793 328 278 86 33 chr11 131338701 131338852 -19444701 - L2 LINE L2 -712 2602 2444 1879 142 88 19 chr11 131338853 131339226 -19444327 - L1MB4 LINE L1 0 6180 5782 2106 115 3 0 chr11 131339231 131339526 -19444027 - AluSx SINE Alu -16 296 1 25 31 0 0 chr11 131339537 131339569 -19443984 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr11 131339583 131339605 -19443948 + AT_rich Low_complexity Low_complexity 1 22 0 643 172 98 128 chr11 131340101 131340305 -19443248 + MER3 DNA MER1_type 5 202 -7 233 273 36 0 chr11 131340271 131340326 -19443227 - MER3 DNA MER1_type -121 88 32 * 810 176 13 13 chr11 131340481 131340640 -19442913 - FRAM SINE Alu -17 159 1 2010 93 0 0 chr11 131340673 131340952 -19442601 - L1MA2 LINE L1 0 6304 6026 247 128 21 43 chr11 131341114 131341161 -19442392 + L2 LINE L2 3268 3313 0 274 229 0 36 chr11 131342075 131342158 -19441395 + L1MC5 LINE L1 7838 7917 -44 25 0 0 0 chr11 131342158 131342183 -19441370 + AT_rich Low_complexity Low_complexity 1 25 0 4917 86 7 28 chr11 131342347 131342379 -19441174 - L1MA3 LINE L1 0 6305 6274 1828 141 3 23 chr11 131342379 131342685 -19440868 - AluJb SINE Alu -12 300 1 4917 86 7 28 chr11 131342685 131343377 -19440176 - L1MA3 LINE L1 -31 6274 5596 1602 143 0 73 chr11 131344343 131344657 -19438896 + AluJo SINE Alu 1 291 -21 2052 131 0 0 chr11 131344666 131344964 -19438589 + AluSx SINE Alu 1 298 -14 2251 61 7 0 chr11 131344966 131345260 -19438293 + AluY SINE Alu 1 296 -15 1554 170 7 21 chr11 131345470 131345759 -19437794 + AluJb SINE Alu 7 291 -21 227 210 50 60 chr11 131347034 131347134 -19436419 + L1P LINE L1 5266 5364 -787 992 244 68 91 chr11 131347235 131347519 -19436034 + L1ME4a LINE L1 5508 5797 -324 2307 58 0 3 chr11 131347519 131347811 -19435742 + AluY SINE Alu 5 295 -16 992 244 68 91 chr11 131347811 131348154 -19435399 + L1ME4a LINE L1 5797 6121 0 1790 115 9 79 chr11 131348306 131348636 -19434917 + AluJo SINE Alu 2 308 -4 1293 188 28 82 chr11 131349151 131349540 -19434013 - L1MC4 LINE L1 0 8042 7675 2166 97 7 0 chr11 131349613 131349913 -19433640 + AluY SINE Alu 1 302 -9 1318 212 52 27 chr11 131350499 131350703 -19432850 - MER2 DNA MER2_type 0 345 128 1532 114 0 42 chr11 131350703 131350967 -19432586 + AluSx SINE Alu 51 303 -9 1318 212 52 27 chr11 131350967 131351092 -19432461 - MER2 DNA MER2_type -217 128 8 189 0 0 0 chr11 131351156 131351177 -19432376 + (T)n Simple_repeat Simple_repeat 1 21 0 770 144 30 8 chr11 131351590 131351722 -19431831 - MER2 DNA MER2_type -210 135 1 376 389 9 22 chr11 131354433 131354659 -19428894 - L2 LINE L2 -482 2832 2610 2389 63 0 0 chr11 131354737 131355040 -19428513 + AluY SINE Alu 1 303 -8 213 31 62 0 chr11 131356035 131356067 -19427486 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 1957 128 4 7 chr11 131356067 131356341 -19427212 - AluSx SINE Alu -30 282 10 2235 107 3 3 chr11 131357487 131357796 -19425757 - AluSc SINE Alu 0 309 1 201 245 0 0 chr11 131357981 131358030 -19425523 + L2 LINE L2 3261 3309 -4 703 230 86 14 chr11 131359059 131359281 -19424272 + MIR SINE MIR 1 238 -24 254 0 30 0 chr11 131359300 131359366 -19424187 - AluSp SINE Alu 0 319 253 2256 76 7 0 chr11 131359366 131359642 -19423911 - AluSp SINE Alu -35 278 1 1890 172 0 7 chr11 131359734 131360037 -19423516 - AluJo SINE Alu -11 301 1 3156 121 25 4 chr11 131360901 131361388 -19422165 - L1MC1 LINE L1 -5 6328 5832 2010 118 24 3 chr11 131361842 131362130 -19421423 + AluSx SINE Alu 1 294 -18 2064 116 0 35 chr11 131363516 131363826 -19419727 + AluSx SINE Alu 1 299 -13 2239 124 0 0 chr11 131364315 131364621 -19418932 + AluSx SINE Alu 5 310 -2 1582 179 11 11 chr11 131369355 131369617 -19413936 + AluJo SINE Alu 1 262 -50 581 250 46 7 chr11 131369620 131369772 -19413781 - L1ME3 LINE L1 -80 6082 5925 2321 74 10 10 chr11 131370023 131370322 -19413231 + AluY SINE Alu 1 299 -12 459 264 88 74 chr11 131370477 131370773 -19412780 - L1MC4a LINE L1 -98 6023 5724 1699 166 57 0 chr11 131370796 131371079 -19412474 + AluJo SINE Alu 1 299 -13 243 267 17 69 chr11 131371563 131371679 -19411874 - MIR3 SINE MIR -6 202 93 279 264 226 0 chr11 131372105 131372260 -19411293 + MIR SINE MIR 70 259 -3 361 305 81 67 chr11 131372768 131373066 -19410487 + L2 LINE L2 2916 3217 -55 199 306 48 0 chr11 131373631 131373693 -19409860 - L2 LINE L2 -822 2492 2428 277 242 202 0 chr11 131373811 131373910 -19409643 - MIR3 SINE MIR -2 206 88 3537 160 52 24 chr11 131374475 131375189 -19408364 - L1MB7 LINE L1 -11 6173 5440 1551 188 7 23 chr11 131375302 131375611 -19407942 + AluJo SINE Alu 5 308 -4 1464 187 49 25 chr11 131376004 131376288 -19407265 + AluJb SINE Alu 1 291 -21 807 142 15 8 chr11 131376405 131376539 -19407014 - MER2 DNA MER2_type -210 135 1 312 385 9 22 chr11 131379288 131379514 -19404039 - L2 LINE L2 -482 2832 2610 2517 63 0 0 chr11 131379592 131379895 -19403658 + AluY SINE Alu 1 303 -8 1957 128 4 7 chr11 131380890 131381196 -19402357 - AluSx SINE Alu 0 314 10 1959 97 7 14 chr11 131382342 131382630 -19400923 - AluSx SINE Alu 0 312 27 2312 80 7 13 chr11 131382700 131383000 -19400553 - AluSg SINE Alu -12 298 1 645 197 66 0 chr11 131383134 131383256 -19400297 + FLAM_C SINE Alu 1 130 -3 559 138 98 24 chr11 131383491 131383510 -19400043 + AluJo/FLAM SINE Alu 1 17 -285 2276 87 0 42 chr11 131383510 131383821 -19399732 + AluSx SINE Alu 1 298 -14 559 138 98 24 chr11 131383821 131383924 -19399629 + AluJo/FLAM SINE Alu 17 132 -170 2477 75 0 0 chr11 131383924 131384219 -19399334 + AluSc SINE Alu 1 295 -14 313 311 57 17 chr11 131384222 131384399 -19399154 + L1M4 LINE L1 5119 5302 -844 849 112 15 22 chr11 131384404 131384538 -19399015 + FLAM_C SINE Alu 1 133 0 2321 101 0 0 chr11 131384543 131384840 -19398713 + AluSx SINE Alu 1 297 -15 1940 146 0 26 chr11 131385256 131385564 -19397989 + AluJb SINE Alu 1 300 -12 2397 83 0 10 chr11 131386596 131386910 -19396643 - AluY SINE Alu 0 311 1 715 214 8 0 chr11 131386914 131387045 -19396508 - FLAM_A SINE Alu -1 132 1 2028 156 3 0 chr11 131387316 131387623 -19395930 - AluSx SINE Alu -4 308 1 1996 130 33 3 chr11 131387882 131388181 -19395372 - AluSx SINE Alu -4 308 1 1887 123 0 93 chr11 131388326 131388658 -19394895 + AluY SINE Alu 3 303 -8 26 0 0 0 chr11 131388846 131388872 -19394681 + GC_rich Low_complexity Low_complexity 1 26 0 28 0 0 0 chr11 131388872 131388900 -19394653 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr11 131389010 131389038 -19394515 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 131389038 131389060 -19394493 + GC_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr11 131389138 131389163 -19394390 + GC_rich Low_complexity Low_complexity 1 25 0 213 39 0 0 chr11 131389181 131389207 -19394346 + (A)n Simple_repeat Simple_repeat 1 26 0 314 287 52 0 chr11 131389321 131389436 -19394117 + MIR SINE MIR 84 204 -58 262 281 47 31 chr11 131389483 131389611 -19393942 - L1ME LINE L1 -220 5901 5772 2331 90 0 0 chr11 131390473 131390762 -19392791 + AluSg SINE Alu 1 289 -21 21 0 0 0 chr11 131393780 131393801 -19389752 + AT_rich Low_complexity Low_complexity 1 21 0 225 108 0 0 chr11 131395699 131395736 -19387817 + (A)n Simple_repeat Simple_repeat 1 37 0 223 229 9 49 chr11 131398336 131398442 -19385111 + MIR SINE MIR 16 114 -134 238 308 169 17 chr11 131399088 131399171 -19384382 - L2 LINE L2 -1 3271 3202 1080 212 44 16 chr11 131399171 131399421 -19384132 - MIR SINE MIR -4 258 2 238 308 169 17 chr11 131399421 131399509 -19384044 - L2 LINE L2 -70 3202 3074 188 208 21 21 chr11 131400347 131400395 -19383158 + L2 LINE L2 3262 3309 -4 241 202 182 2 chr11 131400508 131400611 -19382942 + MIR SINE MIR 44 160 -63 2272 122 0 0 chr11 131400804 131401115 -19382438 - AluSx SINE Alu -1 311 1 1340 252 79 3 chr11 131401148 131401711 -19381842 - ERVL LTR ERVL -148 5337 4829 675 268 0 0 chr11 131401715 131401853 -19381700 - ERVL LTR ERVL -2305 3459 3322 918 108 0 23 chr11 131401855 131401985 -19381568 + FLAM_C SINE Alu 1 127 -16 4669 246 106 26 chr11 131402009 131403343 -19380210 - ERVL LTR ERVL -2432 3332 1776 2368 65 0 3 chr11 131403343 131403634 -19379919 + AluSc SINE Alu 1 290 -19 4669 246 106 26 chr11 131403634 131403849 -19379704 - ERVL LTR ERVL -3988 1776 1580 2274 106 3 7 chr11 131403918 131404219 -19379334 - AluSq SINE Alu -13 300 1 264 218 35 46 chr11 131404523 131404610 -19378943 - LTR33 LTR ERVL -2 519 434 2038 126 18 0 chr11 131405160 131405445 -19378108 - AluSg SINE Alu -20 290 1 1115 106 90 17 chr11 131405445 131405674 -19377879 - L1MCa LINE L1 -4538 1888 1559 1977 115 95 14 chr11 131405679 131406026 -19377527 + THE1C LTR MaLR 1 375 0 3198 83 7 0 chr11 131406027 131406450 -19377103 + THE1C-int LTR MaLR 2 427 -1153 2210 117 0 0 chr11 131406451 131406741 -19376812 + AluSc SINE Alu 1 290 -19 2187 122 0 10 chr11 131406753 131407056 -19376497 + AluSx SINE Alu 1 300 -12 2119 126 0 13 chr11 131407064 131407365 -19376188 + AluSx SINE Alu 1 297 -15 1140 276 19 55 chr11 131407450 131407871 -19375682 - MLT2E LTR ERVL -100 528 123 534 258 50 72 chr11 131407871 131408189 -19375364 - MER34B LTR ERV1 -2 563 253 207 0 0 0 chr11 131408355 131408378 -19375175 + (T)n Simple_repeat Simple_repeat 1 23 0 180 0 0 0 chr11 131408487 131408507 -19375046 + (A)n Simple_repeat Simple_repeat 1 20 0 232 214 0 36 chr11 131409109 131409165 -19374388 + L1MC4 LINE L1 7617 7670 -372 3446 153 89 97 chr11 131409182 131410114 -19373439 - MER21A LTR ERV1 -6 925 1 638 214 17 134 chr11 131410116 131410197 -19373356 + L1MC4 LINE L1 7688 7777 -265 1025 188 6 0 chr11 131410197 131410367 -19373186 + FAM SINE Alu 1 171 -4 2297 115 0 0 chr11 131410369 131410681 -19372872 + AluSq SINE Alu 1 312 -1 638 214 17 134 chr11 131410681 131410998 -19372555 + L1MC4 LINE L1 7778 8042 0 535 248 58 54 chr11 131410991 131411056 -19372497 - L1MC4a LINE L1 -1972 5836 5773 * 2255 81 41 14 chr11 131411056 131411351 -19372202 - AluY SINE Alu -5 306 4 535 248 58 54 chr11 131411351 131411543 -19372010 - L1MC4a LINE L1 -2035 5773 5578 2269 108 13 0 chr11 131411629 131411936 -19371617 - AluSp SINE Alu -2 311 1 368 223 298 0 chr11 131412198 131412319 -19371234 - MER105 DNA DNA -2 202 46 911 167 0 56 chr11 131412512 131412674 -19370879 + AluJo SINE Alu 1 153 -159 1839 149 3 7 chr11 131413050 131413332 -19370221 - AluSg SINE Alu -29 281 1 866 221 17 0 chr11 131413368 131413540 -19370013 - AluJb SINE Alu -1 311 137 284 0 28 0 chr11 131413540 131413576 -19369977 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1695 137 0 24 chr11 131413576 131413831 -19369722 - AluSp SINE Alu -27 286 38 1071 153 0 34 chr11 131414700 131414877 -19368676 - AluJo/FRAM SINE Alu -8 304 134 1480 189 3 55 chr11 131414878 131415185 -19368368 - AluJo SINE Alu -21 291 1 514 201 108 154 chr11 131415462 131415628 -19367925 + L1ME1 LINE L1 5873 6045 -121 667 154 10 0 chr11 131415628 131415732 -19367821 + U6 snRNA snRNA 1 105 -2 514 201 108 154 chr11 131415732 131415754 -19367799 + L1ME1 LINE L1 6045 6066 -100 1937 140 21 0 chr11 131415754 131416040 -19367513 - AluJb SINE Alu -20 292 1 514 201 108 154 chr11 131416040 131416129 -19367424 + L1ME1 LINE L1 6066 6138 -28 2230 114 0 0 chr11 131416175 131416490 -19367063 - AluSq SINE Alu 0 315 1 2252 113 7 3 chr11 131416491 131416791 -19366762 - AluSx SINE Alu -11 301 1 425 241 83 8 chr11 131417033 131417166 -19366387 - L1MA10 LINE L1 -8 6326 6184 2614 44 0 0 chr11 131417427 131417721 -19365832 + AluY SINE Alu 2 295 -16 2336 99 3 0 chr11 131418568 131418872 -19364681 + AluSc SINE Alu 1 305 -4 198 0 0 0 chr11 131420129 131420151 -19363402 + (T)n Simple_repeat Simple_repeat 1 22 0 1306 266 31 26 chr11 131420256 131420708 -19362845 + HAL1 LINE L1 1395 1848 -659 229 178 0 0 chr11 131420710 131420755 -19362798 - MLT1K LTR MaLR -20 568 524 1951 147 3 28 chr11 131420765 131420868 -19362685 + AluSx SINE Alu 1 105 -207 1922 123 78 28 chr11 131420868 131421225 -19362328 + THE1C LTR MaLR 1 375 0 1951 147 3 28 chr11 131421225 131421441 -19362112 + AluSx SINE Alu 105 312 0 281 313 122 0 chr11 131422180 131422311 -19361242 - MIR SINE MIR -68 194 48 1043 157 92 0 chr11 131422319 131422536 -19361017 + L1MB8 LINE L1 5489 5725 -453 2008 153 67 12 chr11 131422766 131423185 -19360368 + L1MB8 LINE L1 5732 6173 -5 313 266 46 9 chr11 131423545 131423654 -19359899 + LTR67 LTR ERVL 428 540 -17 2287 76 0 10 chr11 131423815 131424129 -19359424 + AluY SINE Alu 1 311 0 615 235 0 0 chr11 131424236 131424351 -19359202 + FLAM_C SINE Alu 2 116 -27 1338 176 180 0 chr11 131424995 131425251 -19358302 - AluJo SINE Alu 0 302 1 558 84 0 93 chr11 131425509 131425559 -19357994 + L1PB1 LINE L1 6053 6089 -62 2109 128 0 3 chr11 131425559 131425855 -19357698 + AluSx SINE Alu 1 295 -17 558 84 0 93 chr11 131425855 131425911 -19357642 + L1PB1 LINE L1 6089 6149 -2 248 272 88 44 chr11 131426141 131426255 -19357298 - MIR SINE MIR -46 216 98 1268 203 16 66 chr11 131426375 131426680 -19356873 + AluJo SINE Alu 1 290 -22 574 246 144 31 chr11 131426738 131426933 -19356620 - MIR SINE MIR -3 259 43 209 313 104 0 chr11 131426999 131427066 -19356487 - L2 LINE L2 -43 3229 3156 2164 131 3 3 chr11 131427079 131427385 -19356168 + AluSc SINE Alu 1 306 -3 195 224 75 30 chr11 131427778 131427845 -19355708 + L3 LINE CR1 587 656 -921 1399 237 127 26 chr11 131427911 131428131 -19355422 + L1MC4 LINE L1 6658 6854 -1188 2012 164 3 3 chr11 131428131 131428441 -19355112 + AluSx SINE Alu 1 310 -2 1399 237 127 26 chr11 131428441 131428756 -19354797 + L1MC4 LINE L1 6854 7247 -795 194 380 0 25 chr11 131428781 131428860 -19354693 + MIR SINE MIR 27 103 -105 575 162 370 7 chr11 131428861 131429015 -19354538 - MER20 DNA MER1_type -4 215 6 249 235 49 86 chr11 131429028 131429109 -19354444 + MIR SINE MIR 106 183 -79 1064 248 89 75 chr11 131429132 131429423 -19354130 + L1MC4 LINE L1 7261 7546 -496 1608 151 90 11 chr11 131429423 131429702 -19353851 + AluJb SINE Alu 1 301 -11 1064 248 89 75 chr11 131429702 131430064 -19353489 + L1MC4 LINE L1 7546 7923 -119 2223 94 13 10 chr11 131430361 131430669 -19352884 + AluSx SINE Alu 1 309 -3 2300 89 7 3 chr11 131430848 131431151 -19352402 - AluSg SINE Alu -6 304 1 429 297 0 0 chr11 131431571 131431672 -19351881 + L2 LINE L2 3163 3263 -9 1898 162 7 3 chr11 131431684 131431986 -19351567 - AluSx SINE Alu -9 303 1 1085 315 48 20 chr11 131432062 131432563 -19350990 + L2 LINE L2 2462 2976 -338 2584 68 16 0 chr11 131432583 131432891 -19350662 - AluSq SINE Alu 0 313 1 682 322 119 51 chr11 131433043 131434435 -19349118 - L2 LINE L2 0 3313 1841 490 204 78 49 chr11 131434453 131434595 -19348958 - MIR SINE MIR 0 262 117 277 103 0 0 chr11 131434650 131434689 -19348864 - U2 snRNA snRNA -149 39 1 993 122 0 0 chr11 131434790 131434921 -19348632 + AluSq/x SINE Alu 5 135 -177 2250 131 0 0 chr11 131434922 131435227 -19348326 + AluSg SINE Alu 1 305 -5 1883 105 40 60 chr11 131435328 131435609 -19347944 - MER41B LTR ERV1 -264 371 97 2405 73 10 0 chr11 131435609 131435898 -19347655 + AluSq SINE Alu 1 292 -21 1883 105 40 60 chr11 131435898 131435969 -19347584 - MER41B LTR ERV1 -538 97 26 1962 148 0 13 chr11 131435972 131436270 -19347283 + AluJb SINE Alu 1 294 -18 1975 140 13 7 chr11 131436308 131436616 -19346937 - AluSx SINE Alu -2 310 1 185 336 162 28 chr11 131436617 131436870 -19346683 + L2 LINE L2 3023 3309 -4 1899 138 3 21 chr11 131436946 131437279 -19346274 + AluSx SINE Alu 1 328 0 763 134 36 0 chr11 131437825 131437937 -19345616 + AluJb SINE Alu 2 117 -195 189 0 0 0 chr11 131437938 131437959 -19345594 + (T)n Simple_repeat Simple_repeat 1 21 0 320 277 71 55 chr11 131438057 131438257 -19345296 - MIR SINE MIR -30 232 31 2263 74 7 52 chr11 131438442 131438751 -19344802 + AluSq SINE Alu 1 295 -18 21 57 0 0 chr11 131438811 131438846 -19344707 + AT_rich Low_complexity Low_complexity 1 35 0 231 36 0 0 chr11 131439033 131439061 -19344492 + (A)n Simple_repeat Simple_repeat 1 28 0 766 255 15 30 chr11 131439453 131439653 -19343900 + MIR3 SINE MIR 1 197 -11 685 102 0 0 chr11 131439757 131439855 -19343698 - FLAM_C SINE Alu -10 133 36 325 250 188 0 chr11 131439984 131440080 -19343473 + MER81 DNA DNA 1 114 0 253 319 12 10 chr11 131440833 131440933 -19342620 + MIR SINE MIR 35 134 -94 999 178 23 0 chr11 131441892 131442066 -19341487 - MER45A DNA AcHobo 0 178 1 1057 267 219 28 chr11 131444719 131445405 -19338148 - L3 LINE CR1 0 1577 761 965 196 0 22 chr11 131447533 131447712 -19335841 + FAM SINE Alu 1 175 0 707 143 107 0 chr11 131447796 131447908 -19335645 - FLAM_C SINE Alu -17 126 3 877 233 0 0 chr11 131447963 131448122 -19335431 - FRAM SINE Alu -6 160 2 2435 92 0 7 chr11 131448206 131448511 -19335042 + AluSq SINE Alu 1 303 -10 226 354 47 38 chr11 131448569 131448781 -19334772 - L2 LINE L2 -555 2759 2546 187 159 68 23 chr11 131449617 131449661 -19333892 + MIR SINE MIR 130 175 -87 192 111 0 0 chr11 131452887 131452923 -19330630 + (TA)n Simple_repeat Simple_repeat 1 36 0 402 115 0 0 chr11 131456363 131456424 -19327129 + (GCTG)n Simple_repeat Simple_repeat 4 64 0 211 171 14 71 chr11 131456754 131456824 -19326729 + C-rich Low_complexity Low_complexity 3 68 0 1811 145 0 63 chr11 131457331 131457649 -19325904 + AluSx SINE Alu 1 298 -14 506 317 101 48 chr11 131457947 131458303 -19325250 + L2 LINE L2 2897 3271 -1 364 178 30 0 chr11 131458367 131458468 -19325085 + GA-rich Low_complexity Low_complexity 2 105 0 728 144 54 0 chr11 131458470 131458581 -19324972 + AluJo/FLAM SINE Alu 1 117 -195 1534 194 0 22 chr11 131458584 131458826 -19324727 - AluJo SINE Alu -41 271 34 7420 114 72 47 chr11 131458826 131458955 -19324598 - MER52C LTR ERV1 0 1278 1154 2139 106 7 0 chr11 131458955 131459265 -19324288 - AluSp SINE Alu 0 312 1 7420 114 72 47 chr11 131459265 131460380 -19323173 - MER52C LTR ERV1 -124 1154 1 1534 194 0 22 chr11 131460380 131460410 -19323143 - AluJo SINE Alu -278 34 5 1730 155 44 42 chr11 131460428 131460467 -19323086 - L1MB4 LINE L1 -6 6174 6137 2015 120 23 20 chr11 131460467 131460768 -19322785 + AluSx SINE Alu 1 302 -10 1730 155 44 42 chr11 131460768 131461089 -19322464 - L1MB4 LINE L1 -43 6137 5813 1367 119 6 0 chr11 131461136 131461313 -19322240 - AluSx SINE Alu -133 179 2 1320 170 3 53 chr11 131461320 131461574 -19321979 - L1MB4 LINE L1 -361 5822 5582 2068 128 40 10 chr11 131461574 131461878 -19321675 - AluSq SINE Alu 0 313 1 1320 170 3 53 chr11 131461878 131461906 -19321647 - L1MB4 LINE L1 -601 5582 5554 696 157 54 14 chr11 131461908 131462055 -19321498 - L1MB4 LINE L1 -711 5469 5317 1797 150 16 38 chr11 131462079 131462209 -19321344 + AluJo SINE Alu 7 138 -174 2460 84 13 0 chr11 131462209 131462517 -19321036 + AluSp SINE Alu 1 312 -1 1797 150 16 38 chr11 131462517 131462699 -19320854 + AluJo SINE Alu 138 312 0 325 175 0 0 chr11 131462705 131462762 -19320791 - AluJ/FLAM SINE Alu -232 70 14 1045 113 0 0 chr11 131462831 131462964 -19320589 + AluSx SINE Alu 1 133 -180 2169 107 0 3 chr11 131463001 131463325 -19320228 + AluSx SINE Alu 1 323 0 2281 125 0 0 chr11 131463325 131463638 -19319915 + AluSq SINE Alu 1 313 0 1325 82 0 18 chr11 131463646 131463817 -19319736 + AluSx SINE Alu 120 287 -25 1180 168 0 0 chr11 131463827 131464006 -19319547 + AluY SINE Alu 118 296 -15 2025 137 7 23 chr11 131464046 131464205 -19319348 - AluSx SINE Alu -18 294 141 2381 91 0 0 chr11 131464205 131464501 -19319052 - AluSg SINE Alu -14 296 1 2025 137 7 23 chr11 131464501 131464640 -19318913 - AluSx SINE Alu -171 141 1 357 147 0 53 chr11 131464645 131464720 -19318833 - FLAM_A SINE Alu 0 133 63 23 0 0 0 chr11 131464775 131464798 -19318755 + AT_rich Low_complexity Low_complexity 1 23 0 185 212 0 0 chr11 131464860 131464893 -19318660 - MIR SINE MIR -6 256 224 374 191 45 11 chr11 131465019 131465108 -19318445 + L1MC4 LINE L1 6966 7057 -985 2172 104 7 3 chr11 131465110 131465407 -19318146 + AluSx SINE Alu 1 298 -14 545 182 0 0 chr11 131465420 131465508 -19318045 - AluJo SINE Alu -11 301 214 762 210 0 0 chr11 131465511 131465649 -19317904 - AluJo SINE Alu -171 141 4 1675 195 30 8 chr11 131465662 131466031 -19317522 + L1MC4 LINE L1 7083 7459 -583 412 137 0 0 chr11 131466030 131466103 -19317450 + L1PA14 LINE L1 4252 4324 -1822 * 2453 39 4 0 chr11 131466105 131466426 -19317127 + AluY SINE Alu 1 322 0 274 250 0 0 chr11 131466428 131466488 -19317065 + MER99 DNA DNA 242 301 -527 3586 136 58 98 chr11 131466488 131466715 -19316838 + L1PA14 LINE L1 5101 5335 -826 2029 164 0 3 chr11 131466715 131467027 -19316526 - AluJb SINE Alu -1 311 1 3586 136 58 98 chr11 131467027 131467147 -19316406 + L1PA14 LINE L1 5335 5458 -703 2375 85 7 0 chr11 131467147 131467442 -19316111 - AluSx SINE Alu -15 297 1 3586 136 58 98 chr11 131467442 131467647 -19315906 + L1PA14 LINE L1 5458 5670 -491 1849 109 66 0 chr11 131467647 131467903 -19315650 + AluSq SINE Alu 1 273 -40 3586 136 58 98 chr11 131467903 131468452 -19315101 + L1PA14 LINE L1 5670 6161 0 787 136 45 19 chr11 131468446 131468601 -19314952 + L1MC4 LINE L1 7434 7592 -450 * 1817 149 38 3 chr11 131468605 131468894 -19314659 + AluJb SINE Alu 3 301 -11 615 44 0 67 chr11 131468897 131468987 -19314566 + HY4 scRNA scRNA 1 84 -9 1230 213 38 43 chr11 131468995 131469467 -19314086 + L1MC4 LINE L1 7584 8041 -1 1979 94 8 8 chr11 131469473 131469738 -19313815 - AluSx SINE Alu -47 265 1 1014 114 0 0 chr11 131470220 131470351 -19313202 - AluSc SINE Alu -178 131 1 2400 107 0 3 chr11 131470353 131470663 -19312890 - AluSx SINE Alu -3 309 1 893 91 0 0 chr11 131470852 131470962 -19312591 - FRAM SINE Alu -16 160 51 6325 94 30 11 chr11 131470962 131470999 -19312554 - MER41A-int LTR ERV1 -328 5618 5583 2061 88 4 0 chr11 131470999 131471259 -19312294 + AluSp SINE Alu 1 261 -52 6325 94 30 11 chr11 131471259 131472183 -19311370 - MER41A-int LTR ERV1 -363 5583 4639 526 141 35 0 chr11 131472178 131472263 -19311290 - MER41A-int LTR ERV1 -5858 88 1 * 953 107 20 0 chr11 131472264 131472386 -19311167 - MER41A LTR ERV1 -1 553 426 2284 132 0 0 chr11 131472386 131472697 -19310856 + AluSx SINE Alu 1 311 -1 953 107 20 0 chr11 131472697 131472723 -19310830 - MER41A LTR ERV1 -128 426 402 1928 234 103 114 chr11 131472855 131473051 -19310502 - L2 LINE L2 0 3313 3116 1883 171 3 3 chr11 131473051 131473356 -19310197 + AluJb SINE Alu 1 305 -7 1928 234 103 114 chr11 131473356 131473473 -19310080 - L2 LINE L2 -197 3116 2999 1962 155 3 10 chr11 131473473 131473770 -19309783 - AluJb SINE Alu -17 295 1 1928 234 103 114 chr11 131473770 131474451 -19309102 - L2 LINE L2 -314 2999 2312 1868 146 20 3 chr11 131474451 131474746 -19308807 + AluJo SINE Alu 1 300 -12 1928 234 103 114 chr11 131474746 131474910 -19308643 - L2 LINE L2 -1001 2312 2194 2191 108 4 0 chr11 131474910 131475223 -19308330 - AluSg1 SINE Alu 0 314 1 1928 234 103 114 chr11 131475223 131475315 -19308238 - L2 LINE L2 -1119 2194 2102 830 222 5 58 chr11 131475317 131475396 -19308157 - MIR SINE MIR -62 200 118 2264 107 3 0 chr11 131475396 131475695 -19307858 + AluSx SINE Alu 1 300 -12 830 222 5 58 chr11 131475695 131475822 -19307731 - MIR SINE MIR -144 118 5 180 341 122 0 chr11 131475847 131475929 -19307624 - MIR SINE MIR -121 141 50 534 140 175 9 chr11 131475962 131476076 -19307477 - AluJb SINE Alu -178 134 2 1303 118 0 0 chr11 131476127 131476297 -19307256 - AluSq SINE Alu -10 303 134 2273 114 0 16 chr11 131476297 131476605 -19306948 - AluSx SINE Alu -9 303 1 597 196 9 9 chr11 131476623 131476735 -19306818 + FLAM_A SINE Alu 10 121 -21 2636 47 0 3 chr11 131476749 131477047 -19306506 + AluY SINE Alu 1 297 -14 411 242 75 39 chr11 131477373 131477517 -19306036 + MER5B DNA MER1_type 1 152 -37 250 273 30 15 chr11 131477516 131477582 -19305971 + MIR3 SINE MIR 140 206 -2 * 381 290 97 32 chr11 131477601 131477756 -19305797 + MIR3 SINE MIR 18 182 -26 271 160 40 0 chr11 131477741 131477791 -19305762 - L2 LINE L2 0 3313 3262 * 202 61 61 0 chr11 131477874 131477907 -19305646 + (TTAAA)n Simple_repeat Simple_repeat 1 35 0 2400 79 0 10 chr11 131477927 131478230 -19305323 - AluSg SINE Alu -10 300 1 438 237 205 13 chr11 131478465 131478621 -19304932 + MER5A DNA MER1_type 3 188 -1 2034 146 0 10 chr11 131478926 131479235 -19304318 + AluJo SINE Alu 1 306 -6 1016 112 0 8 chr11 131479313 131479447 -19304106 + AluSq/x SINE Alu 1 133 -179 1456 84 0 0 chr11 131479601 131479780 -19303773 - AluSp SINE Alu -1 312 134 2347 111 3 0 chr11 131479780 131480087 -19303466 - AluSp SINE Alu -5 308 1 809 308 144 49 chr11 131480430 131480956 -19302597 - L3 LINE CR1 -1 1576 1001 2091 122 49 0 chr11 131480956 131481242 -19302311 + AluJb SINE Alu 1 300 -12 394 273 171 32 chr11 131481327 131481514 -19302039 - L3 LINE CR1 -773 804 592 2206 78 0 0 chr11 131481668 131481936 -19301617 + AluY SINE Alu 1 268 -43 2481 86 0 0 chr11 131481947 131482248 -19301305 + AluSc SINE Alu 1 301 -8 2156 143 3 0 chr11 131482768 131483075 -19300478 - AluJb SINE Alu -3 309 2 1918 171 23 0 chr11 131483419 131483724 -19299829 + AluJb SINE Alu 1 312 0 261 294 54 83 chr11 131484509 131484598 -19298955 - MIR SINE MIR -15 247 157 2372 82 3 3 chr11 131484598 131484901 -19298652 - AluSx SINE Alu -8 304 2 261 294 54 83 chr11 131484901 131485015 -19298538 - MIR SINE MIR -105 157 50 895 192 33 0 chr11 131485670 131485852 -19297701 - MER5A DNA MER1_type -1 188 1 264 170 23 93 chr11 131486150 131486508 -19297045 + (CACAA)n Simple_repeat Simple_repeat 1 332 0 248 252 65 72 chr11 131486711 131486850 -19296703 + MER112 DNA MER1_type 19 156 -104 191 163 0 23 chr11 131486853 131486896 -19296657 + CT-rich Low_complexity Low_complexity 2 43 0 1838 194 0 0 chr11 131486904 131487208 -19296345 - AluJo SINE Alu -8 304 1 504 0 0 0 chr11 131487446 131487502 -19296051 + (CA)n Simple_repeat Simple_repeat 1 56 0 2260 92 0 0 chr11 131487633 131487917 -19295636 + AluSg SINE Alu 13 296 -14 536 188 20 10 chr11 131487919 131488020 -19295533 + AluJo SINE Alu 44 145 -167 2340 108 3 0 chr11 131488020 131488325 -19295228 + AluSp SINE Alu 1 306 -7 250 316 219 0 chr11 131488519 131488674 -19294879 + L2 LINE L2 3118 3306 -7 1396 120 130 36 chr11 131488799 131489075 -19294478 - AluSg SINE Alu -8 302 1 390 313 97 36 chr11 131489153 131489348 -19294205 - L1ME3 LINE L1 -265 5897 5691 645 280 42 91 chr11 131489353 131489597 -19293956 - L2 LINE L2 -1 3312 3058 1929 115 73 0 chr11 131489597 131489884 -19293669 - AluSg SINE Alu -2 308 1 2186 122 0 13 chr11 131489884 131490187 -19293366 - AluSx SINE Alu -13 299 1 645 280 42 91 chr11 131490187 131490348 -19293205 - L2 LINE L2 -253 3060 2926 1090 186 104 5 chr11 131490426 131490646 -19292907 - AluJo SINE Alu -22 290 49 2012 218 263 12 chr11 131490651 131490675 -19292878 - L2 LINE L2 -577 2737 2720 765 198 134 0 chr11 131490675 131490832 -19292721 + MER45A DNA AcHobo 1 178 0 2012 218 263 12 chr11 131490832 131491559 -19291994 - L2 LINE L2 -594 2720 1797 806 146 0 156 chr11 131491597 131491802 -19291751 - FRAM SINE Alu -2 174 2 598 206 64 0 chr11 131491807 131491948 -19291605 - L2 LINE L2 -1618 1696 1547 572 289 132 0 chr11 131491969 131492159 -19291394 + L2 LINE L2 924 1138 -2176 594 233 256 8 chr11 131492186 131492392 -19291161 - L2 LINE L2 -2356 958 804 1800 154 13 33 chr11 131492392 131492691 -19290862 - AluJb SINE Alu -19 293 1 594 233 256 8 chr11 131492691 131492746 -19290807 - L2 LINE L2 -2510 804 632 226 259 116 48 chr11 131492998 131493145 -19290408 - L1ME3 LINE L1 -2392 5416 5260 2294 103 0 3 chr11 131493230 131493521 -19290032 - AluSx SINE Alu -22 290 1 633 193 9 0 chr11 131493644 131493753 -19289800 + AluJb SINE Alu 181 290 -22 589 301 136 40 chr11 131493910 131493994 -19289559 - L2 LINE L2 -832 2482 2407 1479 150 135 19 chr11 131493994 131494127 -19289426 + AluJo SINE Alu 1 117 -195 2360 83 3 3 chr11 131494127 131494427 -19289126 + AluSg SINE Alu 1 300 -10 1479 150 135 19 chr11 131494427 131494560 -19288993 + AluJo SINE Alu 117 298 -14 589 301 136 40 chr11 131494560 131494851 -19288702 - L2 LINE L2 -907 2407 2071 265 313 119 15 chr11 131497230 131497364 -19286189 - L2 LINE L2 -231 3082 2935 801 211 20 0 chr11 131497716 131497868 -19285685 + AluJb SINE Alu 134 288 -24 216 267 0 0 chr11 131497917 131497962 -19285591 - L2 LINE L2 -3 3310 3266 234 0 0 0 chr11 131498071 131498097 -19285456 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2141 118 7 7 chr11 131498114 131498410 -19285143 - AluSp SINE Alu -16 297 2 2340 102 0 0 chr11 131498417 131498710 -19284843 - AluSx SINE Alu -19 293 1 711 188 47 27 chr11 131498764 131498913 -19284640 - AluJo SINE Alu -41 271 120 180 0 0 0 chr11 131499056 131499076 -19284477 + (A)n Simple_repeat Simple_repeat 1 20 0 303 185 0 99 chr11 131499113 131499194 -19284359 + MIR SINE MIR 77 149 -113 2453 83 0 3 chr11 131499199 131499501 -19284052 + AluSg SINE Alu 1 301 -9 7277 39 11 7 chr11 131499524 131500824 -19282729 + L1PA6 LINE L1 4844 6148 -6 22 0 0 0 chr11 131500824 131500846 -19282707 + AT_rich Low_complexity Low_complexity 1 22 0 2182 129 3 3 chr11 131500884 131501186 -19282367 - AluSx SINE Alu -10 302 1 361 283 61 0 chr11 131501501 131501600 -19281953 - L2 LINE L2 0 3272 3168 435 352 197 12 chr11 131501607 131502148 -19281405 - L2 LINE L2 -253 3019 2579 2415 100 0 0 chr11 131502148 131502484 -19281069 + AluSx SINE Alu 1 312 0 435 352 197 12 chr11 131502484 131502516 -19281037 - L2 LINE L2 -693 2579 2554 1840 227 91 39 chr11 131502516 131502961 -19280592 + MLT1F LTR MaLR 1 478 -64 2365 114 0 0 chr11 131502961 131503260 -19280293 - AluSx SINE Alu -13 299 1 1840 227 91 39 chr11 131503260 131503329 -19280224 + MLT1F LTR MaLR 478 542 0 435 352 197 12 chr11 131503329 131503556 -19279997 - L2 LINE L2 -718 2554 2070 1027 189 0 11 chr11 131503564 131503744 -19279809 + FRAM SINE Alu 1 176 0 327 306 149 28 chr11 131503753 131504041 -19279512 - L2 LINE L2 -1300 2014 1692 721 176 16 8 chr11 131504105 131504230 -19279323 - FLAM_A SINE Alu -10 132 7 181 264 186 94 chr11 131504242 131504613 -19278940 - L2 LINE L2 -1677 1637 1233 723 161 46 120 chr11 131504634 131504671 -19278882 - MLT2D LTR ERVL 0 414 376 300 27 0 0 chr11 131504671 131504708 -19278845 + (TG)n Simple_repeat Simple_repeat 2 38 0 723 161 46 120 chr11 131504708 131504887 -19278666 - MLT2D LTR ERVL -38 376 214 2244 108 0 7 chr11 131504890 131505186 -19278367 + AluSx SINE Alu 4 297 -15 2356 83 0 17 chr11 131505191 131505491 -19278062 + AluSc SINE Alu 1 295 -14 1549 101 0 5 chr11 131505502 131505709 -19277844 + AluSg/x SINE Alu 102 307 -3 504 183 67 17 chr11 131505709 131505829 -19277724 + AluJo/FRAM SINE Alu 134 259 -53 624 210 0 8 chr11 131505832 131505951 -19277602 - MIR SINE MIR -55 207 90 2705 48 0 0 chr11 131505964 131506274 -19277279 + AluY SINE Alu 1 310 -1 27 29 0 0 chr11 131506326 131506360 -19277193 + GC_rich Low_complexity Low_complexity 1 34 0 2652 17 0 13 chr11 131506464 131506766 -19276787 - AluYa5 SINE Alu -11 300 3 22 0 0 0 chr11 131506768 131506790 -19276763 + AT_rich Low_complexity Low_complexity 1 22 0 1475 203 163 2 chr11 131506809 131507299 -19276254 + L1ME1 LINE L1 5237 5861 -305 1968 92 57 21 chr11 131507308 131507590 -19275963 + AluSg SINE Alu 1 292 -18 801 161 0 44 chr11 131508155 131508292 -19275261 + FLAM_C SINE Alu 7 137 -6 1662 186 7 0 chr11 131509011 131509285 -19274268 + AluSx SINE Alu 1 276 -36 643 133 125 25 chr11 131509301 131509421 -19274132 + FLAM_C SINE Alu 1 132 -1 484 242 16 47 chr11 131509421 131509540 -19274013 - FLAM_A SINE Alu -202 109 1 1466 163 43 0 chr11 131509651 131509909 -19273644 - AluSx SINE Alu -25 287 19 311 194 173 84 chr11 131510002 131510193 -19273360 + Charlie4 DNA MER1_type 1751 1958 -3 234 0 0 0 chr11 131511682 131511708 -19271845 + (GGA)n Simple_repeat Simple_repeat 1 26 0 2091 65 4 0 chr11 131512484 131512747 -19270806 - AluSx SINE Alu -48 264 1 267 284 20 20 chr11 131512750 131512852 -19270701 + MIR3 SINE MIR 84 185 -23 733 212 0 0 chr11 131516647 131516819 -19266734 + FLAM_C SINE Alu 1 172 0 320 230 27 0 chr11 131516912 131516986 -19266567 - MIR SINE MIR -71 191 116 187 286 32 32 chr11 131517117 131517180 -19266373 - L3 LINE CR1 -99 1478 1416 1719 143 52 0 chr11 131517255 131517541 -19266012 - AluJo SINE Alu -10 302 2 2063 106 0 0 chr11 131517622 131517924 -19265629 - AluSq SINE Alu 0 312 11 2335 90 0 13 chr11 131517932 131518243 -19265310 - AluSx SINE Alu -5 307 1 396 151 139 0 chr11 131518367 131518453 -19265100 + MIR SINE MIR 117 214 -48 2112 110 10 0 chr11 131519002 131519311 -19264242 - AluSx SINE Alu 0 312 1 345 291 74 24 chr11 131519402 131519549 -19264004 - MIR SINE MIR -65 143 17 372 295 155 10 chr11 131519607 131519800 -19263753 + MIR SINE MIR 13 233 -29 360 59 0 0 chr11 131520101 131520152 -19263401 + (CA)n Simple_repeat Simple_repeat 1 51 0 1610 181 24 7 chr11 131520159 131520452 -19263101 - AluJo SINE Alu -14 298 1 303 267 30 20 chr11 131520729 131520830 -19262723 - L1M4 LINE L1 -2972 3174 3073 2007 118 13 16 chr11 131520852 131521165 -19262388 - AluSx SINE Alu 0 312 1 284 262 18 118 chr11 131521311 131521532 -19262021 - L2 LINE L2 -16 3297 3099 2439 57 0 3 chr11 131522570 131522870 -19260683 + AluSg SINE Alu 1 299 -11 296 209 270 18 chr11 131523464 131523627 -19259926 + MIR SINE MIR 53 256 -6 1781 110 92 7 chr11 131524979 131525252 -19258301 - AluSx SINE Alu -16 296 1 49 37 0 12 chr11 131525281 131525340 -19258213 + AT_rich Low_complexity Low_complexity 1 60 -20 2271 92 3 0 chr11 131525340 131525644 -19257909 - AluSp SINE Alu -8 305 1 49 37 0 12 chr11 131525644 131525665 -19257888 + AT_rich Low_complexity Low_complexity 60 80 0 1255 171 4 58 chr11 131525744 131526001 -19257552 + AluJo SINE Alu 1 243 -69 949 153 12 0 chr11 131526046 131526209 -19257344 - AluSc SINE Alu 0 309 145 232 309 0 0 chr11 131528356 131528450 -19255103 + (CA)n Simple_repeat Simple_repeat 2 95 0 2131 87 11 0 chr11 131533880 131534167 -19249386 + AluSg1 SINE Alu 1 290 -19 292 291 82 0 chr11 131534172 131534282 -19249271 + MIR SINE MIR 32 150 -112 671 317 58 4 chr11 131536332 131536575 -19246978 - MIR SINE MIR -4 258 3 306 67 0 0 chr11 131537288 131537333 -19246220 + (TG)n Simple_repeat Simple_repeat 2 46 0 1945 120 14 3 chr11 131538101 131538384 -19245169 - AluSx SINE Alu -26 286 1 295 298 101 19 chr11 131538405 131538563 -19244990 + L2 LINE L2 3134 3304 -9 1564 134 0 13 chr11 131538568 131538806 -19244747 + AluSx SINE Alu 6 240 -72 1854 164 7 0 chr11 131538985 131539290 -19244263 + AluSx SINE Alu 1 307 -5 1574 90 9 9 chr11 131539545 131539768 -19243785 + AluSq SINE Alu 1 223 -90 301 157 0 20 chr11 131539768 131539823 -19243730 + AluJo/FRAM SINE Alu 200 246 -56 22 0 0 0 chr11 131539842 131539864 -19243689 + AT_rich Low_complexity Low_complexity 1 22 0 1938 115 21 0 chr11 131540407 131540693 -19242860 - AluSx SINE Alu -20 292 1 617 131 224 0 chr11 131540756 131540863 -19242690 + FLAM_C SINE Alu 1 131 -2 2433 61 0 0 chr11 131540926 131541221 -19242332 - AluY SINE Alu -16 295 1 1752 100 17 0 chr11 131541298 131541538 -19242015 + AluSx SINE Alu 41 284 -28 477 0 0 0 chr11 131541538 131541591 -19241962 + (CA)n Simple_repeat Simple_repeat 2 54 0 2198 116 0 0 chr11 131541751 131542061 -19241492 - AluSq SINE Alu -3 310 1 813 184 0 0 chr11 131542102 131542227 -19241326 - FLAM_A SINE Alu -8 125 1 2767 123 103 148 chr11 131542286 131542489 -19241064 + Tigger2 DNA MER2_type 1 212 -2506 821 112 0 0 chr11 131542489 131542605 -19240948 + AluSg/x SINE Alu 177 292 -18 2767 123 103 148 chr11 131542605 131543108 -19240445 + Tigger2 DNA MER2_type 212 785 -1933 668 102 0 41 chr11 131543132 131543230 -19240323 + AluJo/FLAM SINE Alu 35 128 -184 1722 110 4 4 chr11 131543230 131543475 -19240078 - AluSq SINE Alu -14 299 55 2498 134 0 17 chr11 131543515 131543926 -19239627 + Tigger2 DNA MER2_type 744 1147 -1571 1898 140 0 53 chr11 131543926 131544061 -19239492 + AluSq SINE Alu 1 142 -171 2354 56 30 0 chr11 131544061 131544363 -19239190 + AluY SINE Alu 1 311 0 1898 140 0 53 chr11 131544363 131544548 -19239005 + AluSq SINE Alu 142 304 -9 3702 60 8 8 chr11 131545992 131546460 -19237093 + SVA Other Other 919 1386 0 180 0 0 0 chr11 131546488 131546508 -19237045 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1773 138 16 39 chr11 131546518 131546829 -19236724 + AluSx SINE Alu 3 306 -6 1434 174 113 7 chr11 131546834 131547116 -19236437 + AluSx SINE Alu 1 312 0 311 319 46 84 chr11 131547117 131547350 -19236203 - L1ME4a LINE L1 -33 6088 5865 2202 110 3 0 chr11 131547350 131547658 -19235895 - AluSp SINE Alu -4 309 1 311 319 46 84 chr11 131547658 131547687 -19235866 - L1ME4a LINE L1 -256 5865 5836 893 321 72 59 chr11 131547692 131547822 -19235731 + L2 LINE L2 2201 2328 -944 2079 78 3 65 chr11 131547822 131548144 -19235409 - AluSp SINE Alu -11 302 1 893 321 72 59 chr11 131548144 131548156 -19235397 + L2 LINE L2 2328 2338 -934 2020 113 3 7 chr11 131548156 131548314 -19235239 - AluSx SINE Alu -20 292 134 2373 79 0 0 chr11 131548314 131548619 -19234934 - AluSg SINE Alu -5 305 1 2020 113 3 7 chr11 131548619 131548753 -19234800 - AluSx SINE Alu -178 134 1 1896 135 13 13 chr11 131548760 131549064 -19234489 - AluJb SINE Alu -6 306 3 893 321 72 59 chr11 131549064 131549177 -19234376 + L2 LINE L2 2343 2453 -819 2370 76 3 0 chr11 131549177 131549481 -19234072 - AluY SINE Alu -6 305 1 893 321 72 59 chr11 131549481 131549953 -19233600 + L2 LINE L2 2453 2960 -312 1315 212 3 19 chr11 131549953 131550264 -19233289 + AluSg SINE Alu 1 306 -4 893 321 72 59 chr11 131550264 131550384 -19233169 + L2 LINE L2 2960 3077 -195 261 0 0 0 chr11 131550558 131550587 -19232966 + (A)n Simple_repeat Simple_repeat 1 29 0 860 120 0 23 chr11 131550594 131550727 -19232826 + FRAM SINE Alu 35 164 -12 523 153 24 0 chr11 131551057 131551142 -19232411 + AluJ/FLAM SINE Alu 2 88 -224 21 0 0 31 chr11 131551170 131551183 -19232370 + AT_rich Low_complexity Low_complexity 1 13 -18 2233 78 3 7 chr11 131551183 131551479 -19232074 - AluY SINE Alu -16 295 1 21 0 0 31 chr11 131551479 131551497 -19232056 + AT_rich Low_complexity Low_complexity 13 31 0 1677 158 14 20 chr11 131551581 131551878 -19231675 - AluJb SINE Alu -9 303 9 602 203 7 0 chr11 131551890 131552046 -19231507 - AluJb SINE Alu -18 294 154 2173 106 0 0 chr11 131552118 131552410 -19231143 + AluSg SINE Alu 1 292 -18 2191 107 16 7 chr11 131552745 131553054 -19230499 + AluSx SINE Alu 1 312 0 1038 115 0 0 chr11 131553068 131553207 -19230346 + AluSq/x SINE Alu 1 139 -173 1150 131 17 0 chr11 131553702 131553878 -19229675 + AluSg/x SINE Alu 113 291 -21 2031 116 17 0 chr11 131554034 131554328 -19229225 + AluSx SINE Alu 1 299 -13 213 39 0 0 chr11 131554418 131554444 -19229109 + (T)n Simple_repeat Simple_repeat 1 26 0 243 351 38 43 chr11 131554795 131555006 -19228547 - MIR SINE MIR -11 251 42 854 180 15 97 chr11 131555608 131555733 -19227820 + MER5A DNA MER1_type 1 104 -85 2191 108 0 0 chr11 131555733 131556030 -19227523 + AluSx SINE Alu 1 297 -15 854 180 15 97 chr11 131556030 131556110 -19227443 + MER5A DNA MER1_type 104 189 0 1714 167 10 13 chr11 131556497 131556627 -19226926 + AluJb SINE Alu 1 130 -182 1850 138 16 7 chr11 131556627 131556931 -19226622 + AluSx SINE Alu 2 308 -4 1714 167 10 13 chr11 131556931 131557099 -19226454 + AluJb SINE Alu 130 298 -14 2106 94 0 32 chr11 131557099 131557408 -19226145 + AluSc SINE Alu 1 299 -10 279 295 82 8 chr11 131559029 131559151 -19224402 + MIR SINE MIR 106 236 -26 212 267 0 0 chr11 131559363 131559408 -19224145 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 246 128 0 0 chr11 131559411 131559450 -19224103 + (TG)n Simple_repeat Simple_repeat 1 39 0 380 350 47 0 chr11 131559676 131559857 -19223696 + MIR SINE MIR 16 212 -50 2352 82 7 0 chr11 131559872 131560164 -19223389 + AluSq SINE Alu 1 294 -19 243 0 0 0 chr11 131560218 131560245 -19223308 + (TG)n Simple_repeat Simple_repeat 1 27 0 198 0 0 0 chr11 131560244 131560266 -19223287 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 204 292 0 0 chr11 131560372 131560420 -19223133 - L2 LINE L2 -86 3186 3139 213 121 0 0 chr11 131560484 131560517 -19223036 + (TG)n Simple_repeat Simple_repeat 2 34 0 1271 179 122 0 chr11 131562063 131562326 -19221227 + 7SLRNA srpRNA srpRNA 6 300 -20 579 329 63 31 chr11 131562439 131562694 -19220859 - L2 LINE L2 0 3272 3010 832 182 8 0 chr11 131562762 131562894 -19220659 + FLAM_C SINE Alu 1 133 -10 2489 77 3 0 chr11 131563015 131563315 -19220238 - AluY SINE Alu -10 301 1 221 229 0 0 chr11 131563443 131563491 -19220062 - L2 LINE L2 -1 3312 3265 789 120 8 0 chr11 131563762 131563879 -19219674 + FLAM_C SINE Alu 1 118 -15 25 0 0 0 chr11 131563879 131563904 -19219649 + AT_rich Low_complexity Low_complexity 1 25 0 2069 147 3 0 chr11 131563912 131564204 -19219349 + AluSx SINE Alu 1 293 -19 1514 137 9 4 chr11 131564212 131564438 -19219115 + 7SLRNA srpRNA srpRNA 1 227 -93 655 97 0 0 chr11 131564438 131564531 -19219022 + HY4 scRNA scRNA 1 93 0 550 155 21 0 chr11 131564552 131564649 -19218904 + 7SLRNA srpRNA srpRNA 212 310 -10 257 228 0 18 chr11 131564770 131564827 -19218726 + AluJ/FLAM SINE Alu 3 58 -244 2277 86 7 0 chr11 131564829 131565107 -19218446 + AluSx SINE Alu 17 296 -16 752 174 8 0 chr11 131566287 131566419 -19217134 + FLAM_C SINE Alu 1 133 0 2154 99 21 0 chr11 131566423 131566706 -19216847 + AluSq SINE Alu 1 289 -24 180 0 0 0 chr11 131566708 131566728 -19216825 + (GA)n Simple_repeat Simple_repeat 1 20 0 385 244 94 89 chr11 131567033 131567141 -19216412 - MER5A DNA MER1_type 0 189 78 2401 96 0 0 chr11 131567141 131567434 -19216119 - AluSx SINE Alu -15 297 5 385 244 94 89 chr11 131567434 131567505 -19216048 - MER5A DNA MER1_type -111 78 9 5335 49 6 19 chr11 131568063 131568732 -19214821 - SVA Other Other -712 674 15 2259 110 3 0 chr11 131568764 131569054 -19214499 - AluSg SINE Alu -19 291 1 275 264 0 0 chr11 131569310 131569382 -19214171 - AluS SINE Alu 0 300 229 270 0 0 0 chr11 131571345 131571375 -19212178 + (CCTG)n Simple_repeat Simple_repeat 4 33 0 311 304 66 45 chr11 131573575 131573986 -19209567 - L2 LINE L2 -194 3078 2614 2437 87 0 7 chr11 131573996 131574296 -19209257 + AluSg SINE Alu 1 298 -12 1534 137 112 14 chr11 131574311 131574588 -19208965 + AluSg1 SINE Alu 6 309 0 269 283 54 11 chr11 131575012 131575104 -19208449 - MIR SINE MIR -62 146 51 2359 103 0 0 chr11 131576983 131577284 -19206269 - AluSp SINE Alu -8 305 5 2285 108 10 0 chr11 131577290 131577586 -19205967 - AluSx SINE Alu -12 300 2 2270 105 7 0 chr11 131577589 131577884 -19205669 - AluSq SINE Alu -16 297 1 2185 108 10 16 chr11 131577918 131578224 -19205329 - AluSx SINE Alu -8 304 1 2150 105 7 3 chr11 131579531 131579856 -19203697 - AluSx SINE Alu 0 326 1 1761 125 24 27 chr11 131581846 131582141 -19201412 - AluSq SINE Alu -19 294 1 2064 119 0 23 chr11 131582164 131582466 -19201087 - AluSc SINE Alu -14 295 1 897 81 81 0 chr11 131582466 131582589 -19200964 - AluSc SINE Alu -176 133 1 572 138 98 16 chr11 131582589 131582692 -19200861 - AluJo/FLAM SINE Alu -169 133 17 2287 87 0 42 chr11 131582692 131583002 -19200551 - AluSx SINE Alu -15 297 1 572 138 98 16 chr11 131583002 131583021 -19200532 - AluJo/FLAM SINE Alu -285 17 1 621 200 64 0 chr11 131583253 131583378 -19200175 - FLAM_C SINE Alu 0 133 1 309 304 22 67 chr11 131583382 131583512 -19200041 - L1M4 LINE L1 -1135 5011 4887 2328 80 7 13 chr11 131583512 131583811 -19199742 + AluSg SINE Alu 1 297 -13 240 111 0 0 chr11 131583989 131584025 -19199528 + (A)n Simple_repeat Simple_repeat 1 36 0 366 302 243 6 chr11 131584085 131584254 -19199299 + L1MC4a LINE L1 5827 6035 -1773 22 0 0 0 chr11 131584275 131584297 -19199256 + AT_rich Low_complexity Low_complexity 1 22 0 195 167 191 0 chr11 131584986 131585028 -19198525 + L2 LINE L2 3264 3313 0 290 259 12 24 chr11 131585151 131585236 -19198317 + MIR SINE MIR 149 232 -30 211 170 0 38 chr11 131585930 131585983 -19197570 + CT-rich Low_complexity Low_complexity 1 51 0 1006 228 18 0 chr11 131586034 131586262 -19197291 + MIR SINE MIR 31 262 0 261 257 95 0 chr11 131586320 131586394 -19197159 + L2 LINE L2 2310 2390 -924 511 255 96 90 chr11 131586585 131586918 -19196635 + MLT1I LTR MaLR 23 357 -52 1977 139 10 3 chr11 131586918 131587220 -19196333 - AluSp SINE Alu -9 304 1 1437 154 77 59 chr11 131587287 131587573 -19195980 - AluJb SINE Alu -21 291 1 1972 157 10 0 chr11 131587573 131587865 -19195688 - AluJo SINE Alu -16 296 1 1993 144 10 0 chr11 131588686 131588984 -19194569 - AluJo SINE Alu -10 302 2 2158 105 7 10 chr11 131588993 131589287 -19194266 - AluSx SINE Alu -19 293 1 1665 97 4 23 chr11 131589311 131589569 -19193984 - L1M1 LINE L1 -732 5573 5321 726 143 0 0 chr11 131589599 131589704 -19193849 - FLAM_C SINE Alu -37 106 2 2080 119 7 17 chr11 131589712 131590014 -19193539 - AluSg SINE Alu -11 299 1 242 164 18 0 chr11 131593889 131593944 -19189609 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 673 113 0 0 chr11 131593976 131594073 -19189480 - AluSg/x SINE Alu -18 291 195 2330 112 0 0 chr11 131594096 131594399 -19189154 + AluSx SINE Alu 1 303 -9 249 218 35 46 chr11 131595235 131595322 -19188231 + LTR33 LTR ERVL 434 519 -2 2330 94 3 7 chr11 131595626 131595925 -19187628 + AluSq SINE Alu 1 298 -15 2272 105 0 3 chr11 131596953 131597248 -19186305 + AluSx SINE Alu 1 294 -18 242 164 18 0 chr11 131597280 131597335 -19186218 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 931 218 57 140 chr11 131597900 131597925 -19185628 + MLT1H LTR MaLR 80 106 -443 1875 122 101 0 chr11 131597925 131598203 -19185350 + AluSx SINE Alu 1 306 -6 931 218 57 140 chr11 131598203 131598621 -19184932 + MLT1H LTR MaLR 106 478 -71 1943 155 0 7 chr11 131598621 131598932 -19184621 - AluJb SINE Alu 0 309 1 931 218 57 140 chr11 131598932 131598999 -19184554 + MLT1H LTR MaLR 478 549 0 2549 78 0 0 chr11 131599072 131599381 -19184172 - AluY SINE Alu -1 310 2 2333 117 0 0 chr11 131599445 131599754 -19183799 - AluSx SINE Alu -3 309 1 627 178 67 15 chr11 131599885 131600020 -19183533 - FLAM_C SINE Alu 0 143 2 263 300 0 64 chr11 131600041 131600151 -19183402 - L2 LINE L2 -19 3294 3192 645 146 10 0 chr11 131600173 131600276 -19183277 + U6 snRNA snRNA 1 104 -3 493 161 0 0 chr11 131600310 131600397 -19183156 - FLAM_A SINE Alu -15 127 41 451 311 57 10 chr11 131600426 131600635 -19182918 + MLT1K LTR MaLR 364 582 -6 2153 102 0 3 chr11 131600727 131601042 -19182511 + AluSc SINE Alu 1 314 0 322 209 15 0 chr11 131601042 131601109 -19182444 - MSTC LTR MaLR -360 68 1 1449 207 94 109 chr11 131601337 131601932 -19181621 - MLT1E1 LTR MaLR -48 606 21 329 283 26 105 chr11 131601943 131601975 -19181578 - L1ME4a LINE L1 -252 5869 5836 2101 135 0 10 chr11 131601975 131602287 -19181266 - AluSx SINE Alu -3 309 1 329 283 26 105 chr11 131602287 131602558 -19180995 - L1ME4a LINE L1 -285 5836 5590 2303 78 24 7 chr11 131602686 131602982 -19180571 - AluSx SINE Alu -11 301 1 788 182 18 12 chr11 131603347 131603517 -19180036 - MER69A DNA AcHobo -3 174 4 189 0 0 0 chr11 131603663 131603684 -19179869 + (TC)n Simple_repeat Simple_repeat 2 22 0 216 0 0 0 chr11 131603684 131603708 -19179845 + (T)n Simple_repeat Simple_repeat 1 24 0 216 0 0 0 chr11 131603841 131603865 -19179688 + (A)n Simple_repeat Simple_repeat 1 24 0 446 214 34 8 chr11 131604045 131604162 -19179391 - MER57A LTR ERV1 -4 399 280 1840 161 0 47 chr11 131604172 131604494 -19179059 - AluJo SINE Alu -3 309 3 291 156 0 16 chr11 131604495 131604559 -19178994 - L1MB5 LINE L1 -36 6138 6076 * 1415 178 28 31 chr11 131604542 131604700 -19178853 - L1M4 LINE L1 -2309 3837 3680 1700 179 13 26 chr11 131604700 131605012 -19178541 - AluJb SINE Alu -4 308 1 1415 178 28 31 chr11 131605012 131605173 -19178380 - L1M4 LINE L1 -2466 3680 3519 1800 162 16 3 chr11 131605237 131605552 -19178001 - MLT2D LTR ERVL -92 322 4 2377 101 0 0 chr11 131605552 131605850 -19177703 - AluSx SINE Alu -14 298 1 1665 97 4 23 chr11 131605874 131606132 -19177421 - L1M1 LINE L1 -732 5573 5321 726 143 0 0 chr11 131606162 131606267 -19177286 - FLAM_C SINE Alu -37 106 2 842 130 6 50 chr11 131606446 131606607 -19176946 - AluSg SINE Alu -156 154 1 792 128 47 0 chr11 131606623 131606772 -19176781 - L1MCa LINE L1 -4217 2209 2054 1118 189 0 26 chr11 131606801 131607028 -19176525 + MER46A DNA MER2_type 1 221 -15 4947 153 74 28 chr11 131607037 131607312 -19176241 - L1MCa LINE L1 -4443 1983 1722 1815 156 23 13 chr11 131607312 131607614 -19175939 - AluSx SINE Alu -1 311 7 4947 153 74 28 chr11 131607614 131608492 -19175061 - L1MCa LINE L1 -4704 1722 777 962 179 29 53 chr11 131608502 131608709 -19174844 - L1MCa LINE L1 -6202 224 23 2392 90 13 0 chr11 131608721 131609022 -19174531 - AluSx SINE Alu -7 305 1 1586 207 40 0 chr11 131609029 131609328 -19174225 - AluJo SINE Alu -1 311 1 1892 140 19 19 chr11 131609329 131609637 -19173916 - AluJb SINE Alu 0 312 5 2392 88 0 3 chr11 131609701 131609995 -19173558 - AluSx SINE Alu -19 293 1 1480 243 96 25 chr11 131609998 131610476 -19173077 - L1M4b LINE L1 -5392 1467 956 4459 127 116 132 chr11 131611076 131612383 -19171170 - pTR5 LTR ERV1 -143 2295 276 2351 58 3 3 chr11 131612556 131612849 -19170704 - AluY SINE Alu -18 293 1 1141 45 0 0 chr11 131612849 131612983 -19170570 - AluSc SINE Alu -175 134 1 1913 139 65 34 chr11 131613028 131613381 -19170172 + THE1B LTR MaLR 1 364 0 2086 110 7 0 chr11 131613494 131613786 -19169767 - AluSg SINE Alu -6 304 11 1586 200 11 0 chr11 131613798 131614101 -19169452 - AluJb SINE Alu 0 306 1 1317 198 49 19 chr11 131614128 131614391 -19169162 - REP3 LTR ERV 0 562 292 2870 214 26 85 chr11 131614416 131615446 -19168107 - LTR5 LTR ERVK 0 969 1 1877 102 14 11 chr11 131615457 131615741 -19167812 - AluSg SINE Alu -25 285 1 1328 219 45 7 chr11 131615756 131616025 -19167528 - REP3 LTR ERV -257 305 27 265 241 0 0 chr11 131616084 131616138 -19167415 + L1MC4a LINE L1 6476 6529 -1279 1698 163 7 26 chr11 131616178 131616484 -19167069 + AluJb SINE Alu 1 300 -12 245 259 137 15 chr11 131616488 131616619 -19166934 + L1MC4 LINE L1 7526 7672 -370 314 268 143 12 chr11 131616834 131617002 -19166551 + L1MC4 LINE L1 7853 8042 0 1706 148 115 13 chr11 131617157 131617461 -19166092 - MER1B DNA MER1_type -1 338 4 2042 96 30 20 chr11 131617683 131617985 -19165568 - AluSx SINE Alu -7 305 1 278 250 186 40 chr11 131619060 131619184 -19164369 + L2 LINE L2 2924 3065 -248 182 263 92 92 chr11 131619328 131619404 -19164149 + L2 LINE L2 3145 3220 -52 1201 117 0 0 chr11 131619614 131619777 -19163776 - AluSc SINE Alu -15 294 132 2465 34 0 7 chr11 131619777 131620073 -19163480 - AluYa5 SINE Alu -11 300 7 2268 77 0 31 chr11 131620962 131621285 -19162268 - AluSq SINE Alu 0 313 1 23 0 0 0 chr11 131622182 131622205 -19161348 + AT_rich Low_complexity Low_complexity 1 23 0 1684 163 66 26 chr11 131622273 131622622 -19160931 - MER89 LTR ERV1 0 559 197 295 176 135 0 chr11 131622600 131622674 -19160879 - MER89 LTR ERV1 -475 84 1 * 203 171 0 0 chr11 131624466 131624507 -19159046 + T-rich Low_complexity Low_complexity 1 41 0 2220 86 0 7 chr11 131625049 131625351 -19158202 + AluSx SINE Alu 2 301 -11 1678 129 50 18 chr11 131625443 131625721 -19157832 + AluSx SINE Alu 1 287 -25 2176 105 0 0 chr11 131625726 131626031 -19157522 + AluSx SINE Alu 1 305 -7 1823 114 33 0 chr11 131626090 131626390 -19157163 - AluSq SINE Alu 0 313 5 1351 115 102 88 chr11 131626757 131626925 -19156628 - AluSx SINE Alu -3 309 134 2285 97 0 0 chr11 131626925 131627234 -19156319 - AluSg1 SINE Alu 0 309 1 1351 115 102 88 chr11 131627234 131627370 -19156183 - AluSx SINE Alu -178 134 1 819 144 0 30 chr11 131628918 131629050 -19154503 + FLAM_C SINE Alu 1 128 -5 1941 87 16 68 chr11 131629356 131629667 -19153886 + AluSp SINE Alu 1 295 -18 2103 123 0 0 chr11 131629667 131629960 -19153593 + AluSg SINE Alu 1 293 -17 1611 141 96 24 chr11 131630298 131630589 -19152964 - AluJb SINE Alu 0 312 1 25 0 0 0 chr11 131630589 131630614 -19152939 + AT_rich Low_complexity Low_complexity 1 25 0 2100 104 0 7 chr11 131630942 131631230 -19152323 + AluSx SINE Alu 1 286 -26 1826 115 57 7 chr11 131631252 131631531 -19152022 + AluSx SINE Alu 1 293 -19 1543 167 0 45 chr11 131631663 131631975 -19151578 - AluJo SINE Alu -3 309 12 1885 102 54 20 chr11 131632037 131632332 -19151221 - AluSp SINE Alu -8 305 1 2103 101 3 0 chr11 131632332 131632629 -19150924 - AluSx SINE Alu -6 306 9 356 326 101 13 chr11 131633115 131633288 -19150265 + L1MC/D LINE L1 5424 5613 -508 1840 132 7 0 chr11 131633321 131633601 -19149952 - AluSx SINE Alu -30 282 1 746 93 0 0 chr11 131633624 131633721 -19149832 + AluSg/x SINE Alu 196 292 -18 206 176 20 0 chr11 131633753 131633804 -19149749 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 946 231 49 134 chr11 131634368 131634393 -19149160 + MLT1H LTR MaLR 80 106 -443 1675 130 101 0 chr11 131634393 131634669 -19148884 + AluSx SINE Alu 1 304 -8 946 231 49 134 chr11 131634669 131635087 -19148466 + MLT1H LTR MaLR 106 478 -71 1780 158 0 7 chr11 131635087 131635410 -19148143 - AluJb SINE Alu 0 321 1 946 231 49 134 chr11 131635410 131635470 -19148083 + MLT1H LTR MaLR 478 542 -7 1913 121 0 46 chr11 131635569 131635876 -19147677 - AluSx SINE Alu -19 293 1 1607 175 11 0 chr11 131635920 131636206 -19147347 + AluJb SINE Alu 1 289 -23 198 0 0 0 chr11 131636391 131636413 -19147140 + (A)n Simple_repeat Simple_repeat 1 22 0 2100 104 0 7 chr11 131636852 131637140 -19146413 + AluSx SINE Alu 1 286 -26 1818 115 58 7 chr11 131637162 131637440 -19146113 + AluSx SINE Alu 1 292 -20 1543 167 0 45 chr11 131637572 131637884 -19145669 - AluJo SINE Alu -3 309 12 1967 102 51 17 chr11 131637946 131638241 -19145312 - AluSp SINE Alu -8 305 1 2189 88 3 0 chr11 131638241 131638538 -19145015 - AluSx SINE Alu -6 306 9 793 291 96 81 chr11 131638924 131639220 -19144333 + L1ME4a LINE L1 5313 5603 -518 2250 88 0 0 chr11 131639220 131639516 -19144037 - AluY SINE Alu -15 296 1 793 291 96 81 chr11 131639516 131639852 -19143701 + L1ME4a LINE L1 5603 5955 -166 2218 112 0 0 chr11 131640176 131640488 -19143065 - AluSx SINE Alu 0 312 1 519 195 0 0 chr11 131640509 131640596 -19142957 + Tigger3(Golem) DNA MER2_type 2 88 -2941 1912 184 112 3 chr11 131641303 131641679 -19141874 + MER47B DNA MER2_type 1 417 -1 1941 127 7 3 chr11 131641739 131642051 -19141502 - AluSx SINE Alu 0 313 1 189 0 0 0 chr11 131642167 131642188 -19141365 + (T)n Simple_repeat Simple_repeat 1 21 0 203 171 0 0 chr11 131642189 131642224 -19141329 - MIR SINE MIR -72 190 156 1991 108 24 0 chr11 131642403 131642713 -19140840 - AluSp SINE Alu 0 313 1 431 270 63 0 chr11 131642788 131642899 -19140654 - MIR SINE MIR -121 141 24 1825 128 0 14 chr11 131642899 131643180 -19140373 - AluSx SINE Alu -22 290 14 2315 76 0 10 chr11 131643210 131643514 -19140039 - AluSg SINE Alu -9 301 1 872 163 12 6 chr11 131643587 131643747 -19139806 + FRAM SINE Alu 1 160 -16 1083 179 63 5 chr11 131644438 131644645 -19138908 + MER46A DNA MER2_type 18 236 0 2024 114 0 0 chr11 131644696 131644977 -19138576 + AluSg SINE Alu 1 281 -29 1967 113 27 7 chr11 131645389 131645690 -19137863 + AluSg SINE Alu 1 307 -3 1518 226 57 3 chr11 131645810 131646124 -19137429 - MER82 DNA MER2_type -2 651 321 2072 138 0 0 chr11 131646163 131646468 -19137085 + AluSq SINE Alu 1 305 -8 285 314 64 26 chr11 131646979 131647135 -19136418 + MIR SINE MIR 67 228 -34 762 173 99 31 chr11 131647185 131647376 -19136177 - MER3 DNA MER1_type -5 204 1 1754 109 15 15 chr11 131648049 131648315 -19135238 - AluSq SINE Alu -47 266 1 1395 172 97 4 chr11 131649631 131649898 -19133655 - AluJo SINE Alu -15 297 6 1882 120 13 20 chr11 131649936 131650235 -19133318 - AluSx SINE Alu -9 303 7 2361 73 0 3 chr11 131650411 131650711 -19132842 + AluSc SINE Alu 1 299 -10 1976 107 0 4 chr11 131650723 131651003 -19132550 + AluSq SINE Alu 6 284 -29 860 152 8 0 chr11 131651109 131651241 -19132312 - FLAM_C SINE Alu 0 133 1 831 136 0 0 chr11 131651432 131651557 -19131996 - AluSq/x SINE Alu -188 125 1 285 29 0 0 chr11 131652962 131652996 -19130557 + (TA)n Simple_repeat Simple_repeat 2 35 0 294 29 0 0 chr11 131654663 131654698 -19128855 + (T)n Simple_repeat Simple_repeat 1 35 0 28 0 0 0 chr11 131655320 131655348 -19128205 + AT_rich Low_complexity Low_complexity 1 28 0 1508 176 154 72 chr11 131656782 131656810 -19126743 + L1M4 LINE L1 4408 4432 -1714 1288 211 81 25 chr11 131656810 131657132 -19126421 - MER2 DNA MER2_type -1 343 4 1508 176 154 72 chr11 131657132 131657338 -19126215 + L1M4 LINE L1 4432 4620 -1526 544 214 62 0 chr11 131657338 131657450 -19126103 + FLAM_A SINE Alu 1 119 -14 1508 176 154 72 chr11 131657450 131657755 -19125798 + L1M4 LINE L1 4620 5008 -1138 1834 168 0 0 chr11 131657755 131658052 -19125501 + AluSx SINE Alu 1 297 -15 1508 176 154 72 chr11 131658052 131658135 -19125418 + L1M4 LINE L1 5008 5083 -1063 989 183 35 117 chr11 131658290 131658392 -19125161 + AluJo SINE Alu 2 111 -191 369 0 0 0 chr11 131658392 131658433 -19125120 + (TG)n Simple_repeat Simple_repeat 2 42 0 989 183 35 117 chr11 131658433 131658495 -19125058 + AluJo SINE Alu 111 177 -125 2000 101 7 19 chr11 131658495 131658629 -19124924 + AluSx SINE Alu 1 135 -177 2333 91 0 0 chr11 131658629 131658937 -19124616 + AluSg SINE Alu 1 308 -2 2000 101 7 19 chr11 131658937 131659110 -19124443 + AluSx SINE Alu 135 304 -8 989 183 35 117 chr11 131659110 131659261 -19124292 + AluJo SINE Alu 177 292 -10 262 218 35 46 chr11 131659811 131659898 -19123655 + LTR33 LTR ERVL 434 519 -2 2034 116 3 10 chr11 131660202 131660504 -19123049 + AluSq SINE Alu 1 300 -13 2244 65 0 3 chr11 131660787 131661078 -19122475 - AluSc SINE Alu -19 290 1 2242 221 133 24 chr11 131661078 131661702 -19121851 + ERVL LTR ERVL 1898 2589 -3175 1481 181 10 58 chr11 131661839 131662008 -19121545 - AluJo SINE Alu -7 295 146 2105 103 0 17 chr11 131662008 131662308 -19121245 - AluSg SINE Alu -15 295 1 1481 181 10 58 chr11 131662308 131662447 -19121106 - AluJo SINE Alu -156 146 2 368 291 146 63 chr11 131662448 131663038 -19120515 - L2 LINE L2 -785 2529 1891 235 321 185 0 chr11 131664294 131664478 -19119075 + MIR SINE MIR 20 237 -25 270 306 151 55 chr11 131665343 131665820 -19117733 + L2 LINE L2 2124 2646 -668 1856 116 22 0 chr11 131665861 131666129 -19117424 + AluSx SINE Alu 1 274 -38 675 259 118 35 chr11 131666199 131666427 -19117126 - MIR SINE MIR -12 250 4 774 281 171 71 chr11 131666558 131666925 -19116628 + L3 LINE CR1 568 897 -680 2183 98 0 13 chr11 131666925 131667230 -19116323 + AluSq SINE Alu 1 301 -12 2334 83 0 6 chr11 131667239 131667553 -19116000 + AluSq SINE Alu 1 312 -1 774 281 171 71 chr11 131667553 131667733 -19115820 + L3 LINE CR1 904 1065 -512 1724 112 8 0 chr11 131667733 131667982 -19115571 + AluSq SINE Alu 54 304 -9 774 281 171 71 chr11 131667982 131668243 -19115310 + L3 LINE CR1 1065 1469 -108 2045 112 20 0 chr11 131668245 131668548 -19115005 + AluSc SINE Alu 1 309 0 1250 177 21 31 chr11 131668646 131668934 -19114619 + AluJb SINE Alu 26 310 -2 2188 95 0 10 chr11 131669157 131669463 -19114090 - AluSx SINE Alu -9 303 1 1975 107 57 0 chr11 131669725 131670006 -19113547 - AluSg SINE Alu -12 298 2 2002 108 0 21 chr11 131670093 131670380 -19113173 - AluSc SINE Alu -25 284 4 1087 80 0 0 chr11 131670381 131670518 -19113035 - AluSq/x SINE Alu -175 137 1 239 308 87 39 chr11 131670530 131670634 -19112919 - MIR SINE MIR -68 140 31 301 241 112 78 chr11 131670882 131670998 -19112555 + MIR SINE MIR 17 136 -72 304 258 0 0 chr11 131671366 131671432 -19112121 - MIR SINE MIR -55 153 88 2323 68 0 19 chr11 131671497 131671807 -19111746 + AluY SINE Alu 1 304 -7 1958 124 0 45 chr11 131671825 131672139 -19111414 + AluSg SINE Alu 1 300 -10 2244 87 3 0 chr11 131672208 131672506 -19111047 - AluSq SINE Alu -14 299 1 1736 154 3 14 chr11 131672506 131672782 -19110771 + MER2 DNA MER2_type 71 345 0 838 185 0 0 chr11 131672959 131673089 -19110464 + AluJo/FLAM SINE Alu 2 131 -181 1948 142 0 3 chr11 131673092 131673387 -19110166 - AluSx SINE Alu -17 295 2 23 33 0 0 chr11 131673387 131673417 -19110136 + AT_rich Low_complexity Low_complexity 1 30 0 2652 167 58 52 chr11 131673431 131673981 -19109572 + L1M4 LINE L1 4749 5305 -841 2006 127 10 0 chr11 131673981 131674289 -19109264 + AluSp SINE Alu 3 313 0 2652 167 58 52 chr11 131674289 131674354 -19109199 + L1M4 LINE L1 5305 5368 -778 473 160 106 8 chr11 131674354 131674453 -19109100 - MLT1D LTR MaLR -13 511 398 334 173 0 0 chr11 131674453 131674505 -19109048 + L1MB7 LINE L1 6012 6063 -121 530 132 0 33 chr11 131674505 131674596 -19108957 - AluJb SINE Alu -176 136 49 230 95 71 24 chr11 131674598 131674640 -19108913 + L1MB8 LINE L1 6075 6118 -60 1395 179 34 34 chr11 131674666 131675002 -19108551 - AluJo SINE Alu 0 312 1 401 156 0 0 chr11 131675006 131675070 -19108483 + L1MB8 LINE L1 6115 6178 0 2094 116 0 6 chr11 131675080 131675391 -19108162 + AluSc SINE Alu 1 309 0 268 292 0 21 chr11 131675433 131675529 -19108024 - MLT1K LTR MaLR -30 558 465 1001 151 36 12 chr11 131675679 131675845 -19107708 + AluJb SINE Alu 1 170 -142 31 44 0 0 chr11 131675875 131675920 -19107633 + AT_rich Low_complexity Low_complexity 1 45 0 658 186 51 0 chr11 131675939 131676057 -19107496 + FLAM_C SINE Alu 2 125 -18 666 96 21 0 chr11 131676069 131676163 -19107390 + AluJb SINE Alu 36 131 -181 2073 138 0 0 chr11 131676199 131676510 -19107043 + AluSx SINE Alu 1 311 -1 2283 87 0 0 chr11 131676669 131676969 -19106584 + AluY SINE Alu 1 300 -11 386 173 13 0 chr11 131677016 131677091 -19106462 + L1MB7 LINE L1 6039 6114 -70 1751 136 21 11 chr11 131677097 131677383 -19106170 + AluSx SINE Alu 7 295 -17 1729 98 4 0 chr11 131677393 131677627 -19105926 + AluSq SINE Alu 2 236 -77 198 0 0 0 chr11 131677727 131677749 -19105804 + (A)n Simple_repeat Simple_repeat 1 22 0 322 232 0 32 chr11 131677781 131677857 -19105696 - MIR SINE MIR -123 85 13 2271 97 0 3 chr11 131678759 131679070 -19104483 - AluSg SINE Alu 0 310 1 193 225 89 194 chr11 131679540 131679625 -19103928 + MIR SINE MIR 32 124 -138 2207 111 0 0 chr11 131679625 131679931 -19103622 - AluSx SINE Alu -6 306 1 193 225 89 194 chr11 131679931 131679992 -19103561 + MIR SINE MIR 124 190 -72 1561 163 32 11 chr11 131679992 131680275 -19103278 + AluJo SINE Alu 12 300 -12 193 225 89 194 chr11 131680275 131680385 -19103168 + MIR SINE MIR 190 262 0 327 286 51 73 chr11 131680574 131680675 -19102878 + L2 LINE L2 1177 1274 -2040 701 239 6 39 chr11 131680675 131680855 -19102698 + MER5B DNA MER1_type 4 177 -1 327 286 51 73 chr11 131680855 131680931 -19102622 + L2 LINE L2 1274 1350 -1964 24 0 0 0 chr11 131681114 131681138 -19102415 + AT_rich Low_complexity Low_complexity 1 24 0 213 380 179 11 chr11 131681363 131681542 -19102011 + L2 LINE L2 2550 2758 -556 259 250 67 29 chr11 131681692 131681796 -19101757 + L2 LINE L2 2991 3098 -215 322 260 0 13 chr11 131681984 131682061 -19101492 - MER94 DNA DNA -54 80 5 237 65 0 0 chr11 131682147 131682178 -19101375 + (T)n Simple_repeat Simple_repeat 1 31 0 2687 7 0 0 chr11 131682347 131682647 -19100906 - AluYa5 SINE Alu -11 300 1 517 309 57 84 chr11 131682808 131683102 -19100451 - L2 LINE L2 -13 3300 3000 1990 100 3 34 chr11 131683102 131683424 -19100129 + AluSg SINE Alu 1 313 0 517 309 57 84 chr11 131683424 131683471 -19100082 - L2 LINE L2 -313 3000 2953 2279 93 0 0 chr11 131683471 131683762 -19099791 - AluSg SINE Alu -19 291 1 1945 115 0 0 chr11 131683767 131684037 -19099516 - AluSx SINE Alu -13 299 30 517 309 57 84 chr11 131684037 131684301 -19099252 - L2 LINE L2 -364 2949 2694 1703 157 4 0 chr11 131684311 131684592 -19098961 + AluSx SINE Alu 9 290 -22 246 292 28 0 chr11 131684680 131684752 -19098801 + MER99 DNA DNA 29 102 -726 836 169 6 45 chr11 131684818 131684995 -19098558 - AluSg/x SINE Alu -9 301 132 2342 48 3 0 chr11 131685034 131685370 -19098183 + AluY SINE Alu 1 311 0 1180 184 90 4 chr11 131685371 131685616 -19097937 + MER99 DNA DNA 242 507 -321 26 50 0 0 chr11 131685689 131685729 -19097824 + AT_rich Low_complexity Low_complexity 1 40 0 600 26 0 0 chr11 131685729 131685805 -19097748 - L1MA2 LINE L1 0 6304 6229 2368 62 10 0 chr11 131685907 131686213 -19097340 + AluSp SINE Alu 3 311 -2 1694 163 14 0 chr11 131686228 131686529 -19097024 + AluSx SINE Alu 1 305 0 242 225 78 62 chr11 131687190 131687319 -19096234 + L1MC/D LINE L1 5779 5909 -1899 350 291 252 5 chr11 131687859 131688069 -19095484 - L1MC4 LINE L1 -2 8040 7779 265 102 61 61 chr11 131688071 131688120 -19095433 + AluSg/x SINE Alu 120 168 -134 1891 120 4 4 chr11 131688120 131688395 -19095158 + AluSg SINE Alu 7 281 -29 2369 74 3 0 chr11 131688396 131688695 -19094858 + AluSg SINE Alu 1 300 -10 27 29 0 0 chr11 131688795 131688829 -19094724 + GC_rich Low_complexity Low_complexity 1 34 0 261 83 0 0 chr11 131688851 131688887 -19094666 + (A)n Simple_repeat Simple_repeat 1 36 0 2186 88 3 10 chr11 131689055 131689352 -19094201 - AluSx SINE Alu -17 295 1 193 380 0 25 chr11 131689413 131689492 -19094061 + MIR SINE MIR 27 103 -105 421 209 7 4 chr11 131689494 131689646 -19093907 - MER20 DNA MER1_type -5 214 6 230 239 56 56 chr11 131689668 131689739 -19093814 + MIR SINE MIR 113 183 -79 262 175 0 0 chr11 131689760 131689800 -19093753 - MER2 DNA MER2_type -304 41 2 303 193 0 91 chr11 131690180 131690268 -19093285 + Charlie8 DNA MER1_type 37 116 -2301 509 145 0 0 chr11 131690276 131690352 -19093201 - AluJ/FLAM SINE Alu -233 79 4 2029 120 0 0 chr11 131690381 131690672 -19092881 + AluSx SINE Alu 1 291 -21 1464 106 0 0 chr11 131690679 131690878 -19092675 + AluSx SINE Alu 14 212 -100 2023 91 46 3 chr11 131691380 131691665 -19091888 - AluSg SINE Alu -13 297 1 584 119 0 0 chr11 131692008 131692092 -19091461 - AluJ/FRAM SINE Alu -12 300 217 813 175 0 0 chr11 131692093 131692219 -19091334 - AluJo/FLAM SINE Alu -185 127 2 2092 114 0 17 chr11 131692252 131692550 -19091003 + AluSx SINE Alu 1 293 -19 2024 114 4 0 chr11 131692597 131692909 -19090644 - AluSg SINE Alu 0 313 1 717 264 108 14 chr11 131692915 131693310 -19090243 + MLT2E LTR ERVL 141 627 -1 777 324 29 40 chr11 131693500 131693867 -19089686 + ERVL-E LTR ERVL 282 652 -5112 1116 58 51 212 chr11 131693867 131693947 -19089606 - MER30 DNA MER1_type 0 230 139 2139 101 7 7 chr11 131693947 131694253 -19089300 - AluSx SINE Alu -6 306 1 1116 58 51 212 chr11 131694253 131694275 -19089278 - MER30 DNA MER1_type -91 139 115 2214 102 0 0 chr11 131694275 131694588 -19088965 + AluSq SINE Alu 1 313 0 1116 58 51 212 chr11 131694588 131694758 -19088795 - MER30 DNA MER1_type -115 115 1 777 324 29 40 chr11 131694758 131694810 -19088743 + ERVL-E LTR ERVL 652 696 -5068 363 207 23 0 chr11 131695040 131695127 -19088426 - L1MC4 LINE L1 -6 8036 7948 2155 97 7 0 chr11 131695233 131695531 -19088022 - AluSq SINE Alu -13 300 1 822 143 0 0 chr11 131695577 131695696 -19087857 + FLAM_C SINE Alu 1 119 -24 186 43 0 0 chr11 131695699 131695722 -19087831 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1111 240 108 37 chr11 131695722 131696156 -19087397 + MER74B LTR ERVL 110 574 -48 1299 148 76 48 chr11 131696209 131696500 -19087053 + AluJo SINE Alu 14 312 0 2217 88 0 0 chr11 131696587 131696882 -19086671 - AluSg SINE Alu -15 295 1 3093 229 31 65 chr11 131696892 131697361 -19086192 + ERVL-E LTR ERVL 1758 2188 -3576 2413 67 0 0 chr11 131697361 131697660 -19085893 - AluY SINE Alu -11 300 2 3093 229 31 65 chr11 131697660 131698017 -19085536 + ERVL-E LTR ERVL 2188 2556 -3208 691 243 20 0 chr11 131698020 131698172 -19085381 - FRAM SINE Alu -6 170 16 318 180 0 0 chr11 131698176 131698237 -19085316 - MLT1F LTR MaLR -239 303 243 653 221 37 6 chr11 131698237 131698400 -19085153 - ERVL LTR ERVL -3054 2710 2543 1480 154 70 44 chr11 131698402 131698526 -19085027 + AluJo SINE Alu 1 120 -192 2181 90 10 0 chr11 131698526 131698816 -19084737 - AluSq SINE Alu -20 293 1 1480 154 70 44 chr11 131698816 131698989 -19084564 + AluJo SINE Alu 120 306 -6 2015 102 38 0 chr11 131699217 131699510 -19084043 - AluSx SINE Alu -8 304 1 2192 108 0 0 chr11 131699540 131699836 -19083717 - AluSg SINE Alu -14 296 1 1697 175 0 0 chr11 131699843 131700135 -19083418 - AluJb SINE Alu -20 292 1 1749 120 9 94 chr11 131700179 131700521 -19083032 + AluSq SINE Alu 1 313 0 2119 95 0 10 chr11 131700595 131700891 -19082662 + AluSc SINE Alu 1 293 -16 281 311 78 39 chr11 131700930 131701033 -19082520 - L3 LINE CR1 -1436 141 35 1735 154 13 7 chr11 131701206 131701504 -19082049 - AluJo SINE Alu -12 300 1 1017 188 21 73 chr11 131701513 131701536 -19082017 - Charlie1b DNA MER1_type -2389 372 349 2383 72 0 0 chr11 131701536 131701843 -19081710 + AluY SINE Alu 1 307 -4 1017 188 21 73 chr11 131701843 131701884 -19081669 - Charlie1b DNA MER1_type -2412 349 307 1985 187 22 3 chr11 131701884 131702242 -19081311 + MLT1A1 LTR MaLR 1 365 0 1017 188 21 73 chr11 131702242 131702463 -19081090 - Charlie1b DNA MER1_type -2454 307 101 1889 151 3 3 chr11 131702486 131702791 -19080762 - AluSx SINE Alu -7 305 1 2054 120 0 0 chr11 131702795 131703102 -19080451 - AluSq SINE Alu 0 307 1 2411 58 0 0 chr11 131703130 131703423 -19080130 + AluY SINE Alu 1 293 -18 1943 111 7 0 chr11 131703429 131703708 -19079845 + AluSp SINE Alu 1 281 -32 225 0 0 0 chr11 131703708 131703733 -19079820 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 444 219 12 0 chr11 131703733 131703815 -19079738 - Charlie1b DNA MER1_type -440 83 1 789 256 109 60 chr11 131703826 131704173 -19079380 + L3 LINE CR1 607 970 -607 3971 111 21 53 chr11 131704672 131704946 -19078607 - MER41B LTR ERV1 0 635 354 438 14 28 42 chr11 131704946 131705018 -19078535 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 2230 44 15 0 chr11 131705022 131705296 -19078257 - AluY SINE Alu -33 278 1 3971 111 21 53 chr11 131705296 131705495 -19078058 - MER41B LTR ERV1 -284 351 180 1490 56 127 75 chr11 131705495 131705795 -19077758 - AluSg SINE Alu 0 314 1 3971 111 21 53 chr11 131705795 131705970 -19077583 - MER41B LTR ERV1 -455 180 1 721 290 50 14 chr11 131706013 131706255 -19077298 + MIR SINE MIR 5 258 -4 2059 108 0 7 chr11 131706276 131706573 -19076980 - AluSc SINE Alu -14 295 1 2177 99 0 20 chr11 131706575 131706879 -19076674 - AluSx SINE Alu -14 298 1 397 281 83 0 chr11 131707247 131707367 -19076186 - MER115 DNA AcHobo 0 693 564 495 195 0 0 chr11 131707367 131707449 -19076104 + MER21B LTR ERV1 1 82 -781 862 136 39 13 chr11 131707460 131707614 -19075939 - AluSg/x SINE Alu 0 310 153 1503 112 9 9 chr11 131707614 131707837 -19075716 + AluSq SINE Alu 85 307 -6 270 240 115 29 chr11 131707837 131707941 -19075612 - MER115 DNA AcHobo -159 534 422 293 104 0 62 chr11 131707945 131707993 -19075560 - LTR8 LTR ERV1 0 691 647 744 18 0 100 chr11 131707993 131708103 -19075450 - HUERS-P1 LTR ERV1 -3286 2977 2879 899 135 0 0 chr11 131708140 131708273 -19075280 + FLAM_C SINE Alu 1 133 0 442 274 27 81 chr11 131708273 131708532 -19075021 - L2 LINE L2 -614 2700 2456 1902 103 23 13 chr11 131708711 131709011 -19074542 + AluSx SINE Alu 1 303 -9 30 27 0 0 chr11 131709028 131709065 -19074488 + AT_rich Low_complexity Low_complexity 1 37 0 505 257 128 4 chr11 131709074 131709165 -19074388 - MER112 DNA MER1_type -1 255 177 243 0 0 0 chr11 131709165 131709192 -19074361 + (AATAG)n Simple_repeat Simple_repeat 5 31 0 505 257 128 4 chr11 131709192 131709326 -19074227 - MER112 DNA MER1_type -79 177 2 1529 146 112 0 chr11 131709461 131709721 -19073832 - AluJb SINE Alu -23 289 1 310 298 8 66 chr11 131709732 131709853 -19073700 - L2 LINE L2 -4 3268 3155 570 277 36 12 chr11 131709940 131710106 -19073447 - MIR SINE MIR -5 257 88 870 172 68 52 chr11 131710113 131710305 -19073248 - MLT1B LTR MaLR -4 386 192 206 205 0 0 chr11 131710307 131710346 -19073207 + G-rich Low_complexity Low_complexity 3 41 0 293 85 85 0 chr11 131710346 131710393 -19073160 - MLT1B LTR MaLR -323 51 1 2191 78 0 26 chr11 131710434 131710743 -19072810 - AluY SINE Alu -10 301 1 180 0 0 0 chr11 131710823 131710843 -19072710 + (T)n Simple_repeat Simple_repeat 1 20 0 1034 136 0 28 chr11 131710971 131711147 -19072406 + AluSg/x SINE Alu 121 291 -21 2034 137 3 0 chr11 131711287 131711593 -19071960 - AluSq SINE Alu -6 307 1 247 296 56 0 chr11 131713032 131713103 -19070450 + L2 LINE L2 3187 3261 -52 1023 184 20 0 chr11 131713283 131713484 -19070069 - L1M4 LINE L1 -2210 3936 3732 624 280 19 9 chr11 131713499 131713710 -19069843 - L1M4 LINE L1 -2642 3504 3292 1698 176 3 0 chr11 131713755 131714045 -19069508 + AluJo SINE Alu 2 292 -20 1883 89 4 0 chr11 131714066 131714323 -19069230 + AluY SINE Alu 1 258 -53 705 53 11 11 chr11 131714326 131714421 -19069132 + HY3 scRNA scRNA 4 98 -3 180 0 0 0 chr11 131714422 131714442 -19069111 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2142 99 0 10 chr11 131714586 131714900 -19068653 + AluY SINE Alu 1 311 0 1887 139 0 16 chr11 131714912 131715228 -19068325 + AluSx SINE Alu 1 311 -1 789 149 8 15 chr11 131715237 131715371 -19068182 + FLAM_C SINE Alu 1 133 0 234 0 0 0 chr11 131715560 131715586 -19067967 + (A)n Simple_repeat Simple_repeat 1 26 0 1951 85 105 10 chr11 131715589 131715884 -19067669 - MER4B LTR ERV1 -287 323 1 1455 136 41 0 chr11 131716139 131716360 -19067193 + MER30 DNA MER1_type 1 230 0 863 113 19 75 chr11 131716455 131716613 -19066940 + LTR39 LTR ERV1 1 149 -634 701 124 92 203 chr11 131716613 131716992 -19066561 + MER4C LTR ERV1 1 161 -304 2373 73 0 0 chr11 131716992 131717294 -19066259 - AluSx SINE Alu -10 302 1 701 124 92 203 chr11 131717294 131717430 -19066123 + MER4C LTR ERV1 161 311 -154 2225 101 0 0 chr11 131717433 131717731 -19065822 - AluSg SINE Alu -12 298 1 2896 76 95 0 chr11 131717735 131718144 -19065409 - LTR7 LTR ERV1 -2 448 1 2448 90 48 13 chr11 131718144 131718523 -19065030 - HERVH LTR ERV1 0 7713 7322 1399 118 20 0 chr11 131718521 131718725 -19064828 - HERVH LTR ERV1 -1894 5819 5612 * 4521 137 0 1 chr11 131718740 131719403 -19064150 - HERVH LTR ERV1 -2564 5149 4488 3526 97 4 8 chr11 131719405 131719909 -19063644 - HERVH LTR ERV1 -3720 3993 3492 828 152 41 0 chr11 131719899 131720044 -19063509 - HERVH LTR ERV1 -4423 3290 3140 * 20497 88 30 16 chr11 131720038 131721713 -19061840 - HERVH LTR ERV1 -4726 2987 1250 8359 38 1 0 chr11 131721713 131722681 -19060872 - LTR5 LTR ERVK 0 969 1 20497 88 30 16 chr11 131722681 131723950 -19059603 - HERVH LTR ERV1 -6463 1250 1 2862 88 93 0 chr11 131723952 131724361 -19059192 - LTR7 LTR ERV1 -2 448 2 784 206 13 0 chr11 131724368 131724523 -19059030 + MER4C LTR ERV1 301 457 -8 216 0 0 0 chr11 131724532 131724556 -19058997 + (T)n Simple_repeat Simple_repeat 1 24 0 1333 135 22 4 chr11 131724697 131724927 -19058626 - AluSp SINE Alu -79 234 1 1900 148 0 3 chr11 131724942 131725253 -19058300 - AluY SINE Alu -1 310 1 735 264 133 69 chr11 131725256 131725570 -19057983 - L1ME4a LINE L1 -293 5828 5463 2167 104 0 3 chr11 131725570 131725867 -19057686 - AluSg1 SINE Alu -13 296 1 735 264 133 69 chr11 131725867 131726053 -19057500 - L1ME4a LINE L1 -658 5463 5290 1545 164 11 14 chr11 131726352 131726632 -19056921 + AluJb SINE Alu 1 279 -33 417 20 0 0 chr11 131726632 131726682 -19056871 + (CA)n Simple_repeat Simple_repeat 1 50 0 2157 102 0 3 chr11 131727478 131727773 -19055780 - AluSx SINE Alu -18 294 1 2065 99 0 11 chr11 131728666 131728981 -19054572 + AluSg SINE Alu 1 312 0 25 0 0 0 chr11 131729363 131729388 -19054165 + AT_rich Low_complexity Low_complexity 1 25 0 540 282 88 0 chr11 131729393 131729574 -19053979 + MIR SINE MIR 10 206 -56 1701 143 56 3 chr11 131729657 131729943 -19053610 - AluJb SINE Alu -11 301 1 287 255 226 10 chr11 131730195 131730297 -19053256 - L2 LINE L2 0 3272 3149 229 176 78 0 chr11 131730660 131730711 -19052842 + L1ME3A LINE L1 5565 5619 -551 243 184 11 35 chr11 131730728 131730815 -19052738 + (TTATA)n Simple_repeat Simple_repeat 4 88 0 2057 110 3 0 chr11 131730851 131731142 -19052411 - AluSx SINE Alu -20 292 1 889 207 101 4 chr11 131731142 131731369 -19052184 + L1ME3A LINE L1 5729 5977 -193 1831 118 11 4 chr11 131731371 131731682 -19051871 - AluY SINE Alu 0 313 1 379 170 0 236 chr11 131731891 131732056 -19051497 + L2 LINE L2 3182 3307 -6 991 228 25 0 chr11 131732076 131732278 -19051275 + MIR SINE MIR 1 207 -55 762 211 109 103 chr11 131732522 131732818 -19050735 + L1MC/D LINE L1 4662 4962 -1184 1941 124 10 17 chr11 131732818 131733116 -19050437 - AluSq SINE Alu -17 296 1 762 211 109 103 chr11 131733116 131733169 -19050384 + L1MC/D LINE L1 4962 5013 -1133 226 167 0 0 chr11 131733180 131733222 -19050331 + L1MC/D LINE L1 5894 5935 -307 1674 142 32 0 chr11 131733255 131733536 -19050017 + AluJb SINE Alu 1 290 -22 2025 134 0 3 chr11 131733542 131733849 -19049704 - AluSx SINE Alu -6 306 1 322 127 55 0 chr11 131733865 131733920 -19049633 - AluJo SINE Alu -166 136 79 299 189 0 0 chr11 131733982 131734035 -19049518 + L2 LINE L2 3261 3313 0 1818 174 0 0 chr11 131734075 131734385 -19049168 - AluJb SINE Alu 0 312 3 1794 155 10 3 chr11 131734511 131734808 -19048745 + AluJb SINE Alu 1 299 -13 206 119 48 24 chr11 131734902 131734944 -19048609 + CT-rich Low_complexity Low_complexity 5 47 0 1598 183 0 10 chr11 131735685 131735985 -19047568 + AluJb SINE Alu 16 312 0 878 226 116 61 chr11 131736326 131736498 -19047055 + MLT1K LTR MaLR 135 296 -292 1814 140 0 44 chr11 131736498 131736819 -19046734 - AluJb SINE Alu -5 307 1 878 226 116 61 chr11 131736819 131736956 -19046597 + MLT1K LTR MaLR 296 461 -127 236 53 26 0 chr11 131737016 131737054 -19046499 + (TA)n Simple_repeat Simple_repeat 1 39 0 1825 134 3 20 chr11 131737054 131737242 -19046311 - AluSx SINE Alu -25 287 104 1941 121 79 25 chr11 131737242 131737598 -19045955 - THE1C LTR MaLR 0 375 1 1825 134 3 20 chr11 131737598 131737701 -19045852 - AluSx SINE Alu -208 104 1 242 178 0 0 chr11 131737711 131737756 -19045797 + MLT1K LTR MaLR 524 568 -20 2393 249 36 42 chr11 131737758 131738436 -19045117 - HAL1 LINE L1 -659 1848 1176 1757 143 3 32 chr11 131738436 131738751 -19044802 - AluJo SINE Alu -6 306 1 2393 249 36 42 chr11 131738751 131738969 -19044584 - HAL1 LINE L1 -1331 1176 958 3003 226 78 49 chr11 131738982 131739178 -19044375 - L1MC4 LINE L1 -1 7807 7618 1485 175 31 14 chr11 131739178 131739464 -19044089 - AluJo SINE Alu -21 291 1 3003 226 78 49 chr11 131739464 131739535 -19044018 - L1MC4 LINE L1 -190 7618 7551 1956 143 0 7 chr11 131739535 131739843 -19043710 - AluSx SINE Alu 0 312 7 3003 226 78 49 chr11 131739843 131740739 -19042814 - L1MC4 LINE L1 -257 7551 6599 3586 94 6 10 chr11 131740739 131741241 -19042312 - L1PA14 LINE L1 0 6161 5662 2290 95 0 0 chr11 131741295 131741599 -19041954 - AluSq SINE Alu -9 304 1 2263 92 0 0 chr11 131741599 131741893 -19041660 - AluSq SINE Alu -14 299 5 2266 80 17 0 chr11 131742193 131742493 -19041060 + AluSq SINE Alu 1 305 -8 1989 110 7 3 chr11 131742556 131742848 -19040705 - AluSp SINE Alu -14 299 7 866 155 27 0 chr11 131743174 131743322 -19040231 - AluJo SINE Alu -43 269 118 704 152 0 0 chr11 131743324 131743436 -19040117 - AluSq SINE Alu -10 303 192 306 87 43 0 chr11 131743436 131743482 -19040071 - AluSq SINE Alu -169 133 86 1028 189 0 35 chr11 131743482 131743568 -19039985 - AluJo SINE Alu -92 220 133 2095 105 3 3 chr11 131743568 131743862 -19039691 - AluSg SINE Alu -14 296 3 1028 189 0 35 chr11 131743862 131744003 -19039550 - AluJo SINE Alu -179 133 1 667 204 8 23 chr11 131744007 131744139 -19039414 - FLAM_C SINE Alu -1 132 3 2253 103 0 0 chr11 131744150 131744451 -19039102 - AluSx SINE Alu -11 301 1 182 169 62 77 chr11 131744595 131744660 -19038893 + MIR3 SINE MIR 6 69 -139 2023 107 37 0 chr11 131744776 131745076 -19038477 - AluSx SINE Alu -1 311 1 2319 77 0 0 chr11 131745106 131745403 -19038150 - AluY SINE Alu -14 297 1 1735 154 13 7 chr11 131745435 131745733 -19037820 + AluJo SINE Alu 1 300 -12 231 326 90 34 chr11 131745920 131746009 -19037544 + L3 LINE CR1 48 141 -1436 2163 95 0 7 chr11 131746048 131746344 -19037209 - AluSc SINE Alu -15 294 1 1835 122 6 77 chr11 131746418 131746754 -19036799 - AluSx SINE Alu 0 312 1 1671 178 0 0 chr11 131746798 131747090 -19036463 + AluJb SINE Alu 1 292 -20 555 101 0 13 chr11 131747098 131747177 -19036376 + AluJ/FLAM SINE Alu 2 79 -233 225 222 0 100 chr11 131747185 131747275 -19036278 - Charlie8 DNA MER1_type -2289 128 48 262 175 0 0 chr11 131747655 131747695 -19035858 + MER2 DNA MER2_type 2 41 -304 230 239 56 56 chr11 131747716 131747787 -19035766 - MIR SINE MIR -79 183 113 421 209 7 4 chr11 131747809 131747961 -19035592 + MER20 DNA MER1_type 6 214 -5 193 380 0 25 chr11 131747963 131748042 -19035511 - MIR SINE MIR -105 103 27 2186 88 3 10 chr11 131748103 131748400 -19035153 + AluSx SINE Alu 1 295 -17 994 8 0 16 chr11 131748684 131748806 -19034747 - AluYa5/8 SINE Alu -190 120 1 295 259 129 78 chr11 131748967 131749222 -19034331 - L2 LINE L2 -13 3300 3033 1925 128 0 3 chr11 131749261 131749551 -19034002 + AluSg SINE Alu 1 289 -21 1464 106 0 0 chr11 131749558 131749757 -19033796 + AluSx SINE Alu 14 212 -100 2006 92 46 3 chr11 131750260 131750543 -19033010 - AluSg SINE Alu -15 295 1 584 119 0 0 chr11 131750886 131750970 -19032583 - AluJ/FRAM SINE Alu -12 300 217 813 175 0 0 chr11 131750971 131751097 -19032456 - AluJo/FLAM SINE Alu -185 127 2 2134 112 0 25 chr11 131751130 131751451 -19032102 + AluSq SINE Alu 1 313 0 2011 86 4 0 chr11 131751618 131751886 -19031667 - AluSc SINE Alu -40 269 1 1184 194 0 4 chr11 131751890 131752127 -19031426 - L1 LINE L1 -1052 5094 4859 2208 110 0 0 chr11 131752159 131752459 -19031094 + AluSx SINE Alu 1 300 -12 354 304 77 18 chr11 131752467 131752635 -19030918 + L1M4 LINE L1 5125 5302 -844 800 135 15 15 chr11 131752640 131752773 -19030780 + FLAM_C SINE Alu 1 133 0 1857 131 0 26 chr11 131752783 131753089 -19030464 + AluSx SINE Alu 1 298 -14 2297 74 3 7 chr11 131803612 131803911 -18979642 + AluSx SINE Alu 1 298 -14 195 134 30 119 chr11 131804413 131804480 -18979073 - MIR3 SINE MIR -39 169 109 327 225 0 81 chr11 131805493 131805653 -18977900 + C-rich Low_complexity Low_complexity 4 150 0 198 0 0 0 chr11 131805756 131805778 -18977775 + (TGG)n Simple_repeat Simple_repeat 2 23 0 387 0 0 0 chr11 131805976 131806019 -18977534 + (CCG)n Simple_repeat Simple_repeat 1 43 0 22 35 0 0 chr11 131806098 131806127 -18977426 + GC_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr11 131806794 131806822 -18976731 + AT_rich Low_complexity Low_complexity 1 28 0 815 158 15 0 chr11 131807638 131807771 -18975782 - FLAM_C SINE Alu -7 136 2 437 279 175 26 chr11 131807928 131808082 -18975471 + MER5A DNA MER1_type 13 189 0 1909 118 17 0 chr11 131808149 131808436 -18975117 + AluSp SINE Alu 1 292 -21 194 271 85 0 chr11 131808438 131808497 -18975056 + MIR SINE MIR 75 138 -124 2199 78 0 0 chr11 131808892 131809222 -18974331 + AluSc SINE Alu 1 330 0 1366 141 31 113 chr11 131809716 131810043 -18973510 - AluJb SINE Alu -1 301 2 314 137 20 0 chr11 131810043 131810094 -18973459 - AluSg/x SINE Alu -166 134 83 216 0 0 0 chr11 131810645 131810669 -18972884 + (A)n Simple_repeat Simple_repeat 1 24 0 1709 132 30 56 chr11 131811016 131811320 -18972233 + AluSx SINE Alu 3 298 -14 1932 122 0 4 chr11 131811322 131811627 -18971926 + AluSg SINE Alu 3 306 0 824 236 0 11 chr11 131811688 131811866 -18971687 + FRAM SINE Alu 1 172 -4 359 22 44 0 chr11 131811869 131811914 -18971639 + MER50 LTR ERV1 499 545 -189 743 169 0 8 chr11 131812449 131812567 -18970986 + AluJb SINE Alu 2 118 -194 1518 120 139 8 chr11 131812567 131812834 -18970719 - AluSg1 SINE Alu -7 302 1 33 43 0 29 chr11 131812867 131812891 -18970662 + AT_rich Low_complexity Low_complexity 1 24 -43 2130 94 0 7 chr11 131812891 131813221 -18970332 - AluSp SINE Alu 0 328 1 33 43 0 29 chr11 131813221 131813264 -18970289 + AT_rich Low_complexity Low_complexity 24 67 0 1923 116 61 0 chr11 131813361 131813654 -18969899 + AluSp SINE Alu 1 311 -2 229 190 80 100 chr11 131813724 131813761 -18969792 + MER58C DNA MER1_type 76 112 -2308 1970 138 10 0 chr11 131813761 131814057 -18969496 + AluSx SINE Alu 3 301 -11 229 190 80 100 chr11 131814057 131814119 -18969434 + MER58C DNA MER1_type 112 173 -42 385 98 0 16 chr11 131814172 131814233 -18969320 - AluSp/q SINE Alu -2 301 242 259 61 102 0 chr11 131814340 131814389 -18969164 + T-rich Low_complexity Low_complexity 2 55 0 269 0 56 0 chr11 131814392 131814428 -18969125 + (TTATG)n Simple_repeat Simple_repeat 3 40 0 1101 107 0 24 chr11 131814428 131814587 -18968966 - AluY SINE Alu -21 290 134 2134 111 0 20 chr11 131814587 131814913 -18968640 - AluSc SINE Alu -22 287 2 230 170 0 21 chr11 131815302 131815349 -18968204 - Tigger2 DNA MER2_type -2 2716 2671 885 156 6 23 chr11 131815405 131815578 -18967975 - Tigger2 DNA MER2_type -55 2663 2494 * 1146 93 0 0 chr11 131815573 131815723 -18967830 - AluSc SINE Alu -4 305 156 919 125 180 5 chr11 131815723 131815923 -18967630 - Tigger2 DNA MER2_type -211 2507 2273 398 147 15 0 chr11 131815913 131815981 -18967572 - Tigger2 DNA MER2_type -2649 69 1 * 231 188 0 0 chr11 131816039 131816087 -18967466 + (TG)n Simple_repeat Simple_repeat 2 49 0 2254 111 0 3 chr11 131816088 131816386 -18967167 - AluSx SINE Alu -15 297 1 1634 198 3 39 chr11 131816391 131816699 -18966854 - AluJb SINE Alu -15 297 1 1252 343 0 78 chr11 131816709 131816898 -18966655 - AluSq SINE Alu -4 309 156 2437 68 0 26 chr11 131816898 131817205 -18966348 - AluSg SINE Alu -11 299 1 1252 343 0 78 chr11 131817205 131817350 -18966203 - AluSq SINE Alu -157 156 1 1805 162 35 0 chr11 131817376 131817666 -18965887 + AluJo SINE Alu 1 300 -12 2221 105 14 0 chr11 131818013 131818307 -18965246 + AluSx SINE Alu 1 298 -14 714 155 9 0 chr11 131818320 131818436 -18965117 + FLAM_C SINE Alu 2 118 -25 1116 134 0 12 chr11 131818534 131818698 -18964855 + AluSg SINE Alu 1 162 -148 722 218 47 18 chr11 131818810 131818980 -18964573 - FRAM SINE Alu -3 173 1 1532 123 0 18 chr11 131819421 131819649 -18963904 + AluSq SINE Alu 90 313 0 639 176 23 38 chr11 131819666 131819797 -18963756 + FAM SINE Alu 8 136 -49 871 103 0 0 chr11 131819906 131820013 -18963540 + AluSg/x SINE Alu 126 232 -78 1706 161 10 30 chr11 131820462 131820761 -18962792 - AluJb SINE Alu -19 293 1 2528 74 0 3 chr11 131820902 131821201 -18962352 - AluSq SINE Alu -15 298 1 1810 128 102 0 chr11 131821664 131821930 -18961623 - AluSx SINE Alu -19 293 1 1919 149 14 31 chr11 131822205 131822561 -18960992 + MER47A DNA MER2_type 17 366 0 2316 89 3 3 chr11 131822721 131823023 -18960530 - AluSp SINE Alu -11 302 1 1018 208 39 24 chr11 131823293 131823500 -18960053 - AluSg/x SINE Alu -17 293 84 1921 111 0 15 chr11 131823528 131823799 -18959754 + AluSx SINE Alu 33 299 -13 299 146 0 0 chr11 131824052 131824100 -18959453 - HY4 scRNA scRNA 0 93 46 2131 116 32 117 chr11 131824100 131824298 -18959255 + MER4B LTR ERV1 1 214 -552 1858 179 0 13 chr11 131824298 131824611 -18958942 + AluJb SINE Alu 4 312 0 2131 116 32 117 chr11 131824611 131824683 -18958870 + MER4B LTR ERV1 214 291 -475 2406 81 7 7 chr11 131824683 131824991 -18958562 + AluSq SINE Alu 2 309 -4 2131 116 32 117 chr11 131824991 131825253 -18958300 + MER4B LTR ERV1 291 608 -158 2338 87 0 3 chr11 131825253 131825541 -18958012 + AluSq SINE Alu 6 292 -21 2131 116 32 117 chr11 131825541 131825688 -18957865 + MER4B LTR ERV1 608 766 0 369 62 0 0 chr11 131825688 131825736 -18957817 - HY4 scRNA scRNA -44 49 2 1001 151 54 0 chr11 131825855 131826021 -18957532 - AluJb SINE Alu -2 310 136 248 104 21 62 chr11 131826029 131826069 -18957484 - Alu SINE Alu -135 173 134 2360 108 0 3 chr11 131826069 131826383 -18957170 - AluSq SINE Alu 0 313 1 2358 104 7 0 chr11 131826414 131826712 -18956841 - AluSx SINE Alu -12 300 1 370 319 77 40 chr11 131827539 131827787 -18955766 + L2 LINE L2 3015 3271 -1 2448 98 0 0 chr11 131827828 131828135 -18955418 - AluSc SINE Alu -2 307 1 2360 89 0 0 chr11 131830278 131830583 -18952970 - AluSg SINE Alu 0 305 1 851 197 50 46 chr11 131831516 131831734 -18951819 + MIR SINE MIR 6 224 -38 1919 167 0 16 chr11 131832490 131832807 -18950746 + AluJo SINE Alu 1 312 0 224 333 83 44 chr11 131833285 131833465 -18950088 - L2 LINE L2 -5 3308 3122 279 264 27 45 chr11 131834035 131834115 -18949438 - MER112 DNA MER1_type -1 259 180 2052 63 0 16 chr11 131834115 131834370 -18949183 + AluY SINE Alu 1 251 -60 279 264 27 45 chr11 131834370 131834399 -18949154 - MER112 DNA MER1_type -80 180 152 639 205 8 0 chr11 131834415 131834532 -18949021 + FLAM_A SINE Alu 8 125 -17 2223 109 0 17 chr11 131834540 131834833 -18948720 + AluSg SINE Alu 1 288 -22 547 234 40 95 chr11 131834853 131834960 -18948593 + MIR SINE MIR 53 164 -98 1541 101 0 20 chr11 131834960 131835159 -18948394 + AluSc SINE Alu 83 277 -32 215 30 0 30 chr11 131835159 131835192 -18948361 + (TAA)n Simple_repeat Simple_repeat 1 32 0 547 234 40 95 chr11 131835192 131835251 -18948302 + MIR SINE MIR 163 208 -54 2236 82 0 69 chr11 131835251 131835570 -18947983 + AluSq SINE Alu 1 297 -16 547 234 40 95 chr11 131835570 131835623 -18947930 + MIR SINE MIR 208 262 0 2456 78 7 0 chr11 131835727 131836021 -18947532 + AluSc SINE Alu 1 296 -13 1382 196 29 18 chr11 131836047 131836322 -18947231 + AluJo SINE Alu 11 288 -24 215 245 0 0 chr11 131836350 131836403 -18947150 + A-rich Low_complexity Low_complexity 1 53 0 971 105 53 11 chr11 131836597 131836787 -18946766 - Tigger7 DNA MER2_type -54 2533 2336 2338 84 7 3 chr11 131836787 131837084 -18946469 + AluSx SINE Alu 1 298 -14 426 317 106 0 chr11 131837140 131837282 -18946271 - MIR3 SINE MIR -14 194 38 1432 171 18 33 chr11 131838193 131838468 -18945085 + AluJo SINE Alu 1 271 -41 1522 145 50 50 chr11 131838537 131838819 -18944734 - AluJb SINE Alu -17 295 14 2206 108 7 3 chr11 131839296 131839591 -18943962 - AluSx SINE Alu -16 296 1 2386 70 3 10 chr11 131840234 131840535 -18943018 + AluSq SINE Alu 1 299 -14 407 277 0 0 chr11 131842377 131842478 -18941075 - MIR SINE MIR -63 145 45 572 129 0 30 chr11 131843155 131843256 -18940297 + FLAM_C SINE Alu 44 141 -2 1126 171 0 16 chr11 131843361 131843376 -18940177 + AluSg/x SINE Alu 119 133 -177 1833 145 0 67 chr11 131843376 131843530 -18940023 + AluSx SINE Alu 1 123 -189 2133 137 0 0 chr11 131843530 131843829 -18939724 + AluSx SINE Alu 1 299 -13 1833 145 0 67 chr11 131843829 131844005 -18939548 + AluSx SINE Alu 123 309 -3 1126 171 0 16 chr11 131844005 131844182 -18939371 + AluSg/x SINE Alu 133 308 -2 2235 92 3 14 chr11 131844547 131844842 -18938711 + AluSx SINE Alu 6 297 -15 1904 154 3 20 chr11 131844854 131845153 -18938400 + AluJb SINE Alu 1 294 -18 2204 107 3 10 chr11 131845253 131845551 -18938002 + AluSx SINE Alu 5 300 -12 2330 80 0 17 chr11 131845718 131846018 -18937535 + AluY SINE Alu 2 296 -15 1224 186 18 9 chr11 131846030 131846186 -18937367 - AluJo SINE Alu -20 292 132 270 0 0 0 chr11 131846186 131846216 -18937337 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1224 186 18 9 chr11 131846216 131846279 -18937274 - AluJo SINE Alu -180 132 71 1720 184 3 34 chr11 131846339 131846482 -18937071 + AluJo SINE Alu 1 147 -165 1858 95 4 0 chr11 131846482 131846723 -18936830 + AluSp SINE Alu 64 305 -8 1720 184 3 34 chr11 131846723 131846900 -18936653 + AluJo SINE Alu 147 311 -1 389 311 78 28 chr11 131847675 131847855 -18935698 + MIR SINE MIR 20 208 -54 2658 52 0 0 chr11 131847885 131848190 -18935363 - AluY SINE Alu -4 307 3 580 309 48 0 chr11 131851172 131851340 -18932213 + MER91A DNA MER1_type 21 196 0 823 202 64 21 chr11 131851368 131851556 -18931997 - MIR SINE MIR 0 262 67 1334 116 0 0 chr11 131851625 131851798 -18931755 - AluJb SINE Alu -139 173 1 467 357 13 0 chr11 131851812 131851966 -18931587 + L2 LINE L2 3116 3271 -1 2296 48 33 0 chr11 131853090 131853408 -18930145 - AluY SINE Alu 0 327 1 339 308 75 0 chr11 131853535 131853668 -18929885 - MIR SINE MIR -6 256 114 204 308 75 56 chr11 131853672 131853779 -18929774 + L2 LINE L2 3164 3272 0 282 320 20 20 chr11 131853781 131853881 -18929672 - MIR SINE MIR -75 133 34 452 294 150 54 chr11 131854855 131855384 -18928169 - L2 LINE L2 -5 3267 2631 2473 88 0 0 chr11 131855384 131855680 -18927873 + AluSx SINE Alu 3 298 -14 452 294 150 54 chr11 131855680 131855960 -18927593 - L2 LINE L2 -641 2631 2379 272 300 97 66 chr11 131857313 131857540 -18926013 + L2 LINE L2 3027 3260 -12 1195 172 40 20 chr11 131857679 131857929 -18925624 + MIR SINE MIR 8 262 0 288 340 33 107 chr11 131857926 131858226 -18925327 - L2 LINE L2 0 3272 2995 * 296 226 0 0 chr11 131858727 131858789 -18924764 - MIR SINE MIR -71 137 76 447 247 96 13 chr11 131859016 131859172 -18924381 - MIR SINE MIR -57 205 33 324 303 34 46 chr11 131859200 131859375 -18924178 + MIR SINE MIR 33 205 -57 587 263 0 8 chr11 131860190 131860323 -18923230 + MIR3 SINE MIR 15 146 -62 24 67 0 0 chr11 131861505 131861550 -18922003 + GC_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr11 131861646 131861674 -18921879 + GC_rich Low_complexity Low_complexity 1 28 0 218 130 22 22 chr11 131861765 131861811 -18921742 + (CGGGG)n Simple_repeat Simple_repeat 2 47 0 26 30 0 0 chr11 131861996 131862029 -18921524 + GC_rich Low_complexity Low_complexity 1 33 0 311 295 45 27 chr11 131863192 131863304 -18920249 - MIR SINE MIR -49 213 100 468 266 12 24 chr11 131863485 131863742 -18919811 - AluY SINE Alu 0 399 145 2393 109 0 3 chr11 131865103 131865416 -18918137 - AluSx SINE Alu 0 312 1 342 327 31 6 chr11 131866162 131866321 -18917232 + CT-rich Low_complexity Low_complexity 2 164 0 1906 176 0 0 chr11 131866972 131867262 -18916291 - AluJo SINE Alu -22 290 1 2402 75 14 0 chr11 131867303 131867597 -18915956 - AluSp SINE Alu -15 298 1 192 275 52 128 chr11 131868425 131868558 -18914995 + L2 LINE L2 2691 2798 -516 635 184 83 0 chr11 131868558 131868667 -18914886 - FLAM_C SINE Alu -15 118 1 192 275 52 128 chr11 131868667 131868784 -18914769 + L2 LINE L2 2798 2922 -392 1561 129 112 49 chr11 131869035 131869321 -18914232 + AluJo SINE Alu 1 304 -8 352 273 50 0 chr11 131869598 131869697 -18913856 + L2 LINE L2 3210 3313 0 986 168 5 41 chr11 131869814 131870011 -18913542 - AluJo SINE Alu 0 312 123 1965 80 0 0 chr11 131870362 131870599 -18912954 - AluSg/x SINE Alu 0 312 76 893 259 80 13 chr11 131870621 131870638 -18912915 - MIR SINE MIR 0 262 248 2273 108 3 0 chr11 131870638 131870944 -18912609 + AluSx SINE Alu 1 307 -5 893 259 80 13 chr11 131870944 131871165 -18912388 - MIR SINE MIR -14 248 8 1273 177 48 81 chr11 131871190 131871309 -18912244 + AluJb SINE Alu 1 122 -190 1644 121 132 11 chr11 131871309 131871582 -18911971 - AluSg1 SINE Alu -3 306 1 1273 177 48 81 chr11 131871582 131871772 -18911781 + AluJb SINE Alu 122 300 -12 666 269 93 14 chr11 131871918 131872134 -18911419 + MIR SINE MIR 2 234 -28 311 298 219 28 chr11 131873686 131873864 -18909689 - MIR SINE MIR -4 258 47 297 322 0 11 chr11 131875890 131875977 -18907576 + L2 LINE L2 3180 3265 -7 442 234 27 112 chr11 131875985 131876051 -18907502 - MIR3 SINE MIR -1 207 137 2171 114 7 20 chr11 131876051 131876348 -18907205 - AluSg SINE Alu -17 293 1 442 234 27 112 chr11 131876348 131876469 -18907084 - MIR3 SINE MIR -71 137 36 1922 138 55 0 chr11 131876868 131877157 -18906396 - AluSq SINE Alu -8 305 1 3884 98 3 51 chr11 131878202 131878265 -18905288 + L1MA4 LINE L1 5520 5584 -716 1967 156 0 7 chr11 131878265 131878560 -18904993 + AluSx SINE Alu 1 293 -19 3884 98 3 51 chr11 131878560 131878818 -18904735 + L1MA4 LINE L1 5584 5853 -447 2233 88 0 33 chr11 131878818 131879125 -18904428 + AluSx SINE Alu 3 299 -13 2403 82 10 3 chr11 131879131 131879437 -18904116 + AluSx SINE Alu 5 312 0 3884 98 3 51 chr11 131879437 131879739 -18903814 + L1MA4 LINE L1 5858 6121 -179 2294 126 0 0 chr11 131879739 131880048 -18903505 - AluSx SINE Alu -1 311 3 215 333 31 79 chr11 131880082 131880197 -18903356 - MIR SINE MIR -29 233 133 1146 83 19 0 chr11 131880197 131880354 -18903199 + L1PB1 LINE L1 5988 6147 -4 215 333 31 79 chr11 131880354 131880466 -18903087 - MIR SINE MIR -129 133 17 1954 138 13 16 chr11 131880490 131880794 -18902759 - AluJo SINE Alu -9 303 1 406 256 77 30 chr11 131882568 131882724 -18900829 + L2 LINE L2 3006 3172 -141 2101 131 10 0 chr11 131882724 131883022 -18900531 + AluSq SINE Alu 1 301 -12 406 256 77 30 chr11 131883022 131883033 -18900520 + L2 LINE L2 3172 3181 -132 1622 108 0 0 chr11 131883033 131883247 -18900306 + AluSq SINE Alu 1 214 -99 610 144 162 9 chr11 131883252 131883398 -18900155 + FRAM SINE Alu 21 183 0 2321 88 0 0 chr11 131883401 131883718 -18899835 + AluSx SINE Alu 1 317 0 936 169 0 0 chr11 131883723 131883865 -18899688 + AluJb SINE Alu 1 142 -170 1612 114 75 0 chr11 131883867 131884095 -18899458 + AluSx SINE Alu 1 245 -67 341 209 0 82 chr11 131884118 131884228 -18899325 + L1ME3 LINE L1 6054 6154 -8 180 0 0 0 chr11 131884418 131884438 -18899115 + (T)n Simple_repeat Simple_repeat 1 20 0 1729 129 3 66 chr11 131884637 131884924 -18898629 - AluSx SINE Alu -41 271 3 181 335 30 87 chr11 131884958 131885073 -18898480 - MIR SINE MIR -29 233 136 1108 95 19 0 chr11 131885073 131885231 -18898322 + L1PB1 LINE L1 5988 6148 -3 181 335 30 87 chr11 131885231 131885345 -18898208 - MIR SINE MIR -126 136 17 1954 138 13 16 chr11 131885369 131885673 -18897880 - AluJo SINE Alu -9 303 1 475 216 151 113 chr11 131887438 131887594 -18895959 + L2 LINE L2 3006 3155 -158 2218 103 0 7 chr11 131887594 131887896 -18895657 + AluSq SINE Alu 1 300 -13 475 216 151 113 chr11 131887896 131887907 -18895646 + L2 LINE L2 3155 3164 -149 2357 98 3 0 chr11 131887907 131888204 -18895349 + AluSx SINE Alu 1 298 -14 475 216 151 113 chr11 131888204 131888327 -18895226 + L2 LINE L2 3164 3308 -5 2030 122 31 0 chr11 131888396 131888683 -18894870 + AluSx SINE Alu 1 296 -16 249 182 0 0 chr11 131889144 131889199 -18894354 + A-rich Low_complexity Low_complexity 1 55 0 235 282 127 35 chr11 131889274 131889416 -18894137 + HAL1b LINE L1 1187 1341 -7 201 74 0 0 chr11 131889558 131889585 -18893968 + (TCC)n Simple_repeat Simple_repeat 1 27 0 394 188 89 69 chr11 131890107 131890208 -18893345 + MIR SINE MIR 50 152 -110 531 263 21 62 chr11 131890220 131890314 -18893239 - MIR SINE MIR -14 248 165 2096 112 7 16 chr11 131890314 131890619 -18892934 - AluSp SINE Alu -11 302 1 531 263 21 62 chr11 131890619 131890718 -18892835 - MIR SINE MIR -97 165 63 191 338 7 96 chr11 131890890 131891001 -18892552 + L2 LINE L2 3185 3283 -30 1905 159 0 27 chr11 131891001 131891302 -18892251 - AluJb SINE Alu -19 293 1 191 338 7 96 chr11 131891302 131891326 -18892227 + L2 LINE L2 3283 3308 -5 2314 114 0 0 chr11 131891351 131891649 -18891904 + AluSx SINE Alu 1 298 -14 305 248 274 0 chr11 131891665 131891778 -18891775 + L2 LINE L2 3169 3312 -1 1893 122 54 0 chr11 131891844 131892123 -18891430 + AluJb SINE Alu 1 294 -18 539 191 9 19 chr11 131893943 131894048 -18889505 + FLAM_A SINE Alu 26 129 -13 571 269 168 0 chr11 131894850 131894999 -18888554 - MER5A DNA MER1_type -2 187 14 214 213 27 27 chr11 131895082 131895157 -18888396 + T-rich Low_complexity Low_complexity 1 75 0 2298 99 7 0 chr11 131895169 131895463 -18888090 - AluSp SINE Alu -17 296 1 2383 87 3 0 chr11 131895463 131895761 -18887792 - AluSc SINE Alu -9 300 2 200 33 0 33 chr11 131895772 131895802 -18887751 + (TTA)n Simple_repeat Simple_repeat 2 30 0 851 215 13 0 chr11 131895802 131895951 -18887602 - FRAM SINE Alu -15 151 1 1366 77 12 6 chr11 131895966 131896136 -18887417 - AluSq SINE Alu -142 171 1 951 188 170 70 chr11 131896143 131896414 -18887139 - AluJo SINE Alu 0 302 5 2433 55 7 3 chr11 131896429 131896720 -18886833 - AluY SINE Alu -19 292 1 29 0 0 0 chr11 131897012 131897041 -18886512 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr11 131897175 131897202 -18886351 + AT_rich Low_complexity Low_complexity 1 27 0 344 54 0 54 chr11 131897215 131897271 -18886282 + (A)n Simple_repeat Simple_repeat 1 53 0 235 282 127 35 chr11 131897345 131897487 -18886066 + HAL1b LINE L1 1187 1341 -7 201 74 0 0 chr11 131897630 131897657 -18885896 + (TCC)n Simple_repeat Simple_repeat 1 27 0 313 233 97 10 chr11 131898005 131898108 -18885445 - MIR SINE MIR 0 262 151 410 178 89 69 chr11 131898164 131898265 -18885288 + MIR SINE MIR 50 152 -110 531 263 21 62 chr11 131898277 131898371 -18885182 - MIR SINE MIR -14 248 165 2279 93 7 10 chr11 131898371 131898673 -18884880 - AluSp SINE Alu -12 301 1 531 263 21 62 chr11 131898673 131898772 -18884781 - MIR SINE MIR -97 165 63 191 338 7 96 chr11 131898944 131899055 -18884498 + L2 LINE L2 3185 3283 -30 1905 159 0 27 chr11 131899055 131899356 -18884197 - AluJb SINE Alu -19 293 1 191 338 7 96 chr11 131899356 131899380 -18884173 + L2 LINE L2 3283 3308 -5 1528 134 146 8 chr11 131899405 131899689 -18883864 + AluSg1 SINE Alu 1 319 0 28 0 0 0 chr11 131900582 131900610 -18882943 + AT_rich Low_complexity Low_complexity 1 28 0 2841 36 44 14 chr11 131900949 131901311 -18882242 - SVA Other Other -1013 373 1 2287 99 14 0 chr11 131901898 131902192 -18881361 - AluSx SINE Alu -14 298 1 408 286 25 8 chr11 131902193 131902312 -18881241 - MIR3 SINE MIR -52 156 36 1909 142 55 0 chr11 131902711 131903000 -18880553 - AluSq SINE Alu -8 305 1 270 0 0 0 chr11 131903827 131903857 -18879696 + (T)n Simple_repeat Simple_repeat 1 30 0 71 14 0 72 chr11 131904027 131904166 -18879387 + AT_rich Low_complexity Low_complexity 1 129 0 592 297 0 27 chr11 131904287 131904506 -18879047 + AluYa5 SINE Alu 4 216 -95 742 210 8 0 chr11 131904579 131904703 -18878850 + FLAM_A SINE Alu 1 125 -8 2229 102 0 20 chr11 131904711 131905005 -18878548 + AluSg SINE Alu 1 288 -22 530 215 37 0 chr11 131905025 131905132 -18878421 + MIR SINE MIR 53 163 -99 1421 126 0 20 chr11 131905132 131905330 -18878223 + AluSc SINE Alu 83 276 -33 215 30 0 30 chr11 131905331 131905364 -18878189 + (TAA)n Simple_repeat Simple_repeat 1 32 0 2156 91 0 72 chr11 131905423 131905743 -18877810 + AluSq SINE Alu 1 297 -16 2447 78 7 0 chr11 131905900 131906194 -18877359 + AluSc SINE Alu 1 296 -13 322 282 22 24 chr11 131906230 131906365 -18877188 + FLAM_A SINE Alu 25 124 -9 204 111 0 0 chr11 131906530 131906566 -18876987 + (A)n Simple_repeat Simple_repeat 1 36 0 986 300 3 3 chr11 131906572 131906875 -18876678 + AluSq SINE Alu 1 303 0 2257 99 3 0 chr11 131907441 131907772 -18875781 - AluSp SINE Alu 0 332 1 636 280 26 64 chr11 131908429 131908740 -18874813 + AluSp SINE Alu 1 299 -4 21 0 0 0 chr11 131909051 131909072 -18874481 + GC_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr11 131909092 131909118 -18874435 + (A)n Simple_repeat Simple_repeat 1 26 0 1672 144 16 75 chr11 131909532 131909880 -18873673 + AluJb SINE Alu 1 312 0 711 178 39 61 chr11 131910525 131910706 -18872847 - L1MA4 LINE L1 -1 6299 6123 1261 245 3 7 chr11 131910706 131911016 -18872537 + AluSg SINE Alu 1 309 -1 711 178 39 61 chr11 131911016 131911064 -18872489 - L1MA4 LINE L1 -177 6123 6075 2311 89 7 10 chr11 131911167 131911470 -18872083 - AluSq SINE Alu -11 302 1 356 242 40 20 chr11 131911470 131911569 -18871984 - MIR SINE MIR -99 163 63 191 338 7 96 chr11 131911741 131911852 -18871701 + L2 LINE L2 3185 3283 -30 1905 159 0 27 chr11 131911852 131912153 -18871400 - AluJb SINE Alu -19 293 1 191 338 7 96 chr11 131912153 131912177 -18871376 + L2 LINE L2 3283 3308 -5 2423 109 0 0 chr11 131912202 131912513 -18871040 + AluSx SINE Alu 1 311 -1 243 0 0 0 chr11 131912543 131912570 -18870983 + (T)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr11 131912793 131912813 -18870740 + (C)n Simple_repeat Simple_repeat 1 20 0 2308 161 26 37 chr11 131913092 131913404 -18870149 + L1MA4 LINE L1 5812 6119 -181 2332 107 3 3 chr11 131913404 131913713 -18869840 - AluSg SINE Alu -1 309 1 2308 161 26 37 chr11 131913713 131913892 -18869661 + L1MA4 LINE L1 6119 6298 -2 22 0 0 0 chr11 131914160 131914182 -18869371 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 131914241 131914264 -18869289 + AT_rich Low_complexity Low_complexity 1 23 0 2214 109 3 10 chr11 131914872 131915175 -18868378 - AluSx SINE Alu -7 305 5 1807 159 3 26 chr11 131915275 131915577 -18867976 - AluJb SINE Alu -17 295 1 1140 263 3 14 chr11 131915589 131915886 -18867667 - AluSq SINE Alu -5 298 5 23 0 0 0 chr11 131915958 131915981 -18867572 + AT_rich Low_complexity Low_complexity 1 23 0 298 265 29 0 chr11 131916324 131916392 -18867161 - MER5A DNA MER1_type -76 113 44 321 47 0 0 chr11 131916527 131916570 -18866983 + (T)n Simple_repeat Simple_repeat 1 43 0 23 0 0 0 chr11 131916570 131916593 -18866960 + AT_rich Low_complexity Low_complexity 1 23 0 2356 98 3 0 chr11 131916593 131916888 -18866665 - AluSp SINE Alu -17 296 1 2389 87 3 0 chr11 131916888 131917186 -18866367 - AluSc SINE Alu -9 300 2 201 33 0 33 chr11 131917197 131917227 -18866326 + (TTA)n Simple_repeat Simple_repeat 2 180 0 851 214 13 6 chr11 131917227 131917376 -18866177 - FRAM SINE Alu -158 144 1 1417 94 0 0 chr11 131917391 131917562 -18865991 - AluSq SINE Alu -142 171 1 198 0 0 0 chr11 131917567 131917589 -18865964 + (T)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr11 131917721 131917743 -18865810 + (T)n Simple_repeat Simple_repeat 1 22 0 35 24 0 0 chr11 131917846 131917888 -18865665 + AT_rich Low_complexity Low_complexity 1 42 0 180 0 0 0 chr11 131917891 131917911 -18865642 + (G)n Simple_repeat Simple_repeat 1 20 0 675 0 0 0 chr11 131918019 131918094 -18865459 + (G)n Simple_repeat Simple_repeat 1 75 0 1716 126 141 0 chr11 131918309 131918578 -18864975 - AluSg SINE Alu -3 307 1 325 294 21 59 chr11 131918678 131918865 -18864688 - AluYa5 SINE Alu -3 298 119 270 0 0 0 chr11 131918865 131918895 -18864658 + (T)n Simple_repeat Simple_repeat 1 30 0 207 0 0 0 chr11 131918921 131918944 -18864609 + (G)n Simple_repeat Simple_repeat 1 23 0 26 0 0 0 chr11 131919042 131919068 -18864485 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr11 131919186 131919212 -18864341 + AT_rich Low_complexity Low_complexity 1 26 0 243 0 0 0 chr11 131920476 131920503 -18863050 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr11 131920504 131920525 -18863028 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr11 131920672 131920695 -18862858 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 131921021 131921042 -18862511 + AT_rich Low_complexity Low_complexity 1 21 0 746 305 13 3 chr11 131921077 131921385 -18862168 + AluSp SINE Alu 2 312 -1 2068 113 45 0 chr11 131921442 131921734 -18861819 + AluJb SINE Alu 1 305 -7 26 30 0 0 chr11 131922011 131922044 -18861509 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr11 131922271 131922293 -18861260 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr11 131922567 131922592 -18860961 + AT_rich Low_complexity Low_complexity 1 25 0 2429 102 0 0 chr11 131922679 131922984 -18860569 - AluSx SINE Alu -7 305 1 396 353 8 8 chr11 131923006 131923241 -18860312 - AluSq SINE Alu 0 303 69 2845 29 46 14 chr11 131923342 131923693 -18859860 - SVA Other Other -1018 368 7 2225 93 21 0 chr11 131924280 131924570 -18858983 - AluSx SINE Alu -14 298 3 268 333 39 47 chr11 131924606 131924735 -18858818 - L2 LINE L2 -16 3256 3129 2197 121 3 10 chr11 131924770 131925083 -18858470 + AluSx SINE Alu 1 311 -1 2135 93 48 3 chr11 131925584 131925873 -18857680 + AluSc SINE Alu 1 302 -7 1111 155 0 0 chr11 131925877 131926045 -18857508 + AluSg/x SINE Alu 135 302 -8 1156 230 92 0 chr11 131926045 131926328 -18857225 + L1ME3A LINE L1 5666 5974 -196 252 132 0 0 chr11 131926338 131926376 -18857177 - Alu SINE Alu -16 286 249 283 182 74 125 chr11 131926380 131926435 -18857118 + L1ME3A LINE L1 6004 6060 -110 2054 132 7 0 chr11 131926435 131926724 -18856829 - AluSx SINE Alu -21 291 1 283 182 74 125 chr11 131926724 131926844 -18856709 + L1ME3A LINE L1 6060 6170 0 1779 159 7 26 chr11 131926876 131927184 -18856369 - AluJo SINE Alu -10 302 1 1918 122 44 4 chr11 131927320 131927591 -18855962 + AluSx SINE Alu 1 282 -30 1537 174 66 28 chr11 131927626 131927913 -18855640 + AluJb SINE Alu 11 308 -4 2041 137 0 17 chr11 131927967 131928267 -18855286 + AluSx SINE Alu 1 295 -17 898 65 0 49 chr11 131928324 131928481 -18855072 + AluSg/x SINE Alu 167 317 0 186 282 128 0 chr11 131928929 131929007 -18854546 + MIR SINE MIR 104 191 -71 257 259 62 0 chr11 131929109 131929190 -18854363 + L2 LINE L2 3227 3312 -1 606 153 0 0 chr11 131929426 131929524 -18854029 - AluJ/FLAM SINE Alu -213 99 2 2356 103 3 0 chr11 131930021 131930332 -18853221 + AluSx SINE Alu 1 312 0 2221 109 0 13 chr11 131930705 131931009 -18852544 - AluJb SINE Alu -12 300 1 322 243 68 0 chr11 131931908 131931982 -18851571 + MIR SINE MIR 60 138 -70 207 0 0 0 chr11 131932181 131932204 -18851349 + (T)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr11 131932230 131932251 -18851302 + (G)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr11 131932351 131932376 -18851177 + AT_rich Low_complexity Low_complexity 1 25 0 956 143 0 0 chr11 131932500 131932633 -18850920 - AluSq/x SINE Alu -180 133 1 497 209 122 0 chr11 131932650 131932765 -18850788 - FLAM_C SINE Alu 0 133 5 2449 55 7 3 chr11 131932780 131933071 -18850482 - AluY SINE Alu -19 292 1 2063 120 7 3 chr11 131933351 131933672 -18849881 + AluSx SINE Alu 1 322 0 2404 97 3 3 chr11 131933672 131933983 -18849570 + AluSq SINE Alu 3 313 0 2577 56 0 0 chr11 131935366 131935668 -18847885 + AluY SINE Alu 1 302 -9 2264 102 17 0 chr11 131935790 131936085 -18847468 + AluSx SINE Alu 1 300 -12 2007 152 3 3 chr11 131936827 131937129 -18846424 + AluJb SINE Alu 1 302 -10 1843 136 4 11 chr11 131937152 131937425 -18846128 + AluSx SINE Alu 1 271 -41 21 0 0 0 chr11 131937783 131937804 -18845749 + AT_rich Low_complexity Low_complexity 1 21 0 868 215 6 0 chr11 131937997 131938160 -18845393 - AluJo SINE Alu -1 301 138 1132 220 4 0 chr11 131938164 131938405 -18845148 - AluSp SINE Alu -8 305 64 418 268 7 43 chr11 131938406 131938544 -18845009 - AluJo SINE Alu -165 137 5 39 0 0 0 chr11 131938553 131938592 -18844961 + AT_rich Low_complexity Low_complexity 1 39 0 1094 243 7 7 chr11 131938592 131938888 -18844665 + AluSq SINE Alu 4 299 -4 199 339 64 0 chr11 131938950 131939030 -18844523 + MIR SINE MIR 67 157 -105 1773 150 10 33 chr11 131939030 131939330 -18844223 + AluJb SINE Alu 1 293 -19 199 339 64 0 chr11 131939330 131939358 -18844195 + MIR SINE MIR 157 182 -80 234 0 0 0 chr11 131939805 131939831 -18843722 + (T)n Simple_repeat Simple_repeat 1 26 0 368 290 70 38 chr11 131940447 131940671 -18842882 + MIR SINE MIR 21 262 0 362 141 0 0 chr11 131940941 131941005 -18842548 + AluSc SINE Alu 71 134 -165 2292 106 3 3 chr11 131941005 131941308 -18842245 + AluSx SINE Alu 1 303 -9 1179 125 0 18 chr11 131941341 131941509 -18842044 + AluSg/x SINE Alu 132 296 -14 970 133 133 57 chr11 131941606 131941885 -18841668 + AluSg SINE Alu 1 300 0 363 286 143 0 chr11 131942084 131942238 -18841315 - MIR3 SINE MIR -3 205 30 235 204 0 0 chr11 131944137 131944181 -18839372 + GA-rich Low_complexity Low_complexity 3 46 0 241 286 71 45 chr11 131945074 131945186 -18838367 - L2 LINE L2 -1 3271 3157 2335 94 17 0 chr11 131945258 131945556 -18837997 - AluSx SINE Alu -9 303 1 865 199 17 11 chr11 131945751 131945927 -18837626 + MIR SINE MIR 84 260 -2 215 287 96 0 chr11 131945925 131946019 -18837534 - L2 LINE L2 -243 3029 2927 * 1639 106 139 16 chr11 131946233 131946536 -18837017 + MER47A DNA MER2_type 27 366 0 229 243 10 48 chr11 131949353 131949456 -18834097 + G-rich Low_complexity Low_complexity 2 100 0 186 43 0 0 chr11 131949457 131949480 -18834073 + (GGGGA)n Simple_repeat Simple_repeat 4 26 0 24 0 0 0 chr11 131949578 131949602 -18833951 + GC_rich Low_complexity Low_complexity 1 24 0 1867 145 13 19 chr11 131950590 131950901 -18832652 - AluJo SINE Alu -1 311 3 227 239 75 15 chr11 131952248 131952315 -18831238 + MIR3 SINE MIR 9 79 -129 422 308 30 47 chr11 131953361 131953530 -18830023 + MIR SINE MIR 49 214 -48 958 214 42 42 chr11 131953544 131953782 -18829771 - MER90 LTR ERV1 0 575 338 2421 71 17 0 chr11 131953784 131954079 -18829474 + AluSx SINE Alu 1 300 -12 2007 152 3 3 chr11 131954821 131955123 -18828430 + AluJb SINE Alu 1 302 -10 2280 117 0 10 chr11 131955146 131955454 -18828099 + AluSx SINE Alu 1 305 -7 2255 102 3 0 chr11 131956018 131956341 -18827212 - AluSp SINE Alu 0 324 1 377 62 0 0 chr11 131956995 131957043 -18826510 + Alu SINE Alu 1 48 -254 180 0 0 0 chr11 131957043 131957063 -18826490 + (G)n Simple_repeat Simple_repeat 1 20 0 28 0 0 0 chr11 131957720 131957748 -18825805 + AT_rich Low_complexity Low_complexity 1 28 0 188 35 35 0 chr11 131958641 131958670 -18824883 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1527 134 146 8 chr11 131958672 131958925 -18824628 - AluSg1 SINE Alu -21 288 1 1004 119 0 0 chr11 131959008 131959142 -18824411 + AluSq/x SINE Alu 1 134 -179 2219 106 0 13 chr11 131959144 131959456 -18824097 + AluSg SINE Alu 1 308 -2 1972 123 62 3 chr11 131959485 131959777 -18823776 - AluSx SINE Alu -3 309 1 2249 101 7 0 chr11 131959975 131960272 -18823281 + AluSx SINE Alu 1 299 -13 1581 121 33 7 chr11 131960370 131960643 -18822910 + LTR23 LTR ERV1 1 280 -157 225 0 0 0 chr11 131960643 131960668 -18822885 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 615 155 0 0 chr11 131960692 131960789 -18822764 - AluJ/FLAM SINE Alu -214 98 2 594 98 35 161 chr11 131960792 131960817 -18822736 + LTR23 LTR ERV1 282 309 -128 1990 93 50 4 chr11 131960817 131961097 -18822456 + AluSq SINE Alu 13 305 -8 594 98 35 161 chr11 131961097 131961245 -18822308 + LTR23 LTR ERV1 309 433 -4 840 138 13 26 chr11 131961312 131961464 -18822089 + AluJo SINE Alu 21 170 -142 3789 91 43 0 chr11 131961469 131961998 -18821555 - MER41A LTR ERV1 0 554 3 1661 143 32 0 chr11 131961998 131962249 -18821304 + AluSx SINE Alu 35 293 -19 2205 121 3 3 chr11 131962251 131962564 -18820989 + AluSq SINE Alu 1 313 0 235 125 25 0 chr11 131962564 131962604 -18820949 + Alu SINE Alu 133 173 -135 1001 151 54 0 chr11 131962612 131962778 -18820775 + AluJb SINE Alu 136 310 -2 369 62 0 0 chr11 131962897 131962945 -18820608 + HY4 scRNA scRNA 2 49 -44 1584 149 6 185 chr11 131962945 131963092 -18820461 - MER4E LTR ERV1 0 766 594 2324 90 0 3 chr11 131963092 131963380 -18820173 - AluSq SINE Alu -21 292 6 1584 149 6 185 chr11 131963380 131963663 -18819890 - MER4E LTR ERV1 -172 594 437 2221 87 7 7 chr11 131963663 131963950 -18819603 - AluSq SINE Alu -25 288 2 1584 149 6 185 chr11 131963950 131964022 -18819531 - MER4E LTR ERV1 -329 437 354 1894 163 0 22 chr11 131964022 131964341 -18819212 - AluJb SINE Alu 0 312 1 2367 104 7 0 chr11 131964371 131964670 -18818883 - AluSx SINE Alu -11 301 1 370 319 77 40 chr11 131965497 131965745 -18817808 + L2 LINE L2 3015 3271 -1 2378 108 0 0 chr11 131965786 131966093 -18817460 - AluSc SINE Alu -2 307 1 208 0 0 0 chr11 131968236 131968259 -18815294 + (TTTA)n Simple_repeat Simple_repeat 2 124 0 2360 89 0 0 chr11 131968259 131968541 -18815012 - AluSg SINE Alu -28 282 1 857 197 50 46 chr11 131969477 131969695 -18813858 + MIR SINE MIR 6 224 -38 1794 158 0 10 chr11 131970451 131970748 -18812805 + AluJo SINE Alu 1 294 -18 215 337 149 34 chr11 131971246 131971596 -18811957 - L2 LINE L2 -5 3308 2919 307 243 28 28 chr11 131971996 131972076 -18811477 - MER112 DNA MER1_type -1 259 177 1932 63 0 16 chr11 131972076 131972331 -18811222 + AluY SINE Alu 1 251 -60 307 243 28 28 chr11 131972331 131972357 -18811196 - MER112 DNA MER1_type -82 178 153 715 218 8 0 chr11 131972369 131972493 -18811060 + FLAM_A SINE Alu 1 125 -8 2002 123 0 17 chr11 131972500 131972793 -18810760 + AluSg SINE Alu 1 288 -22 501 215 37 0 chr11 131972813 131972920 -18810633 + MIR SINE MIR 53 163 -99 1448 101 0 20 chr11 131972920 131973119 -18810434 + AluSc SINE Alu 83 277 -32 215 30 0 30 chr11 131973119 131973152 -18810401 + (TAA)n Simple_repeat Simple_repeat 1 32 0 2085 85 0 69 chr11 131973211 131973530 -18810023 + AluSq SINE Alu 1 297 -16 2404 71 0 0 chr11 131973687 131973983 -18809570 + AluSc SINE Alu 1 296 -13 1423 212 27 20 chr11 131974000 131974292 -18809261 + AluJo SINE Alu 1 294 -8 180 0 0 0 chr11 131974348 131974368 -18809185 + (A)n Simple_repeat Simple_repeat 1 20 0 248 282 127 35 chr11 131974443 131974585 -18808968 + HAL1b LINE L1 1187 1341 -7 201 74 0 0 chr11 131974728 131974755 -18808798 + (TCC)n Simple_repeat Simple_repeat 1 27 0 296 233 97 10 chr11 131975103 131975206 -18808347 - MIR SINE MIR 0 262 151 374 178 89 69 chr11 131975262 131975363 -18808190 + MIR SINE MIR 50 152 -110 506 269 21 57 chr11 131975375 131975468 -18808085 - MIR SINE MIR -14 248 164 2118 99 7 10 chr11 131975468 131975771 -18807782 - AluSq SINE Alu -11 302 1 506 269 21 57 chr11 131975771 131975870 -18807683 - MIR SINE MIR -98 164 63 1811 147 0 27 chr11 131976153 131976452 -18807101 - AluJb SINE Alu -19 293 3 215 274 77 26 chr11 131976480 131976597 -18806956 + MER5A DNA MER1_type 64 186 -3 * 271 327 26 18 chr11 131976501 131976614 -18806939 - MER5A DNA MER1_type -74 115 2 1812 137 47 7 chr11 131977032 131977331 -18806222 + AluJo SINE Alu 1 311 -1 1262 173 25 25 chr11 131977344 131977622 -18805931 - MER90 LTR ERV1 -297 278 1 2360 52 3 58 chr11 131980380 131980709 -18802844 - AluSp SINE Alu -2 311 1 2284 83 10 0 chr11 131980933 131981233 -18802320 + AluSq SINE Alu 1 303 -10 1777 151 13 13 chr11 131981239 131981544 -18802009 + AluJb SINE Alu 6 310 -2 302 312 101 0 chr11 131982053 131982162 -18801391 - MIR SINE MIR -69 139 20 1919 136 7 7 chr11 131982324 131982618 -18800935 - AluJb SINE Alu -18 294 1 1625 183 19 16 chr11 131984213 131984392 -18799161 - AluJo SINE Alu 0 312 135 222 116 0 0 chr11 131984392 131984435 -18799118 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2142 74 0 11 chr11 131984435 131984718 -18798835 - AluSg SINE Alu -30 280 1 1625 183 19 16 chr11 131984718 131984848 -18798705 - AluJo SINE Alu -176 136 1 2310 91 3 0 chr11 131986006 131986314 -18797239 + AluSx SINE Alu 3 311 -1 206 322 138 0 chr11 131986433 131986520 -18797033 + L2 LINE L2 3174 3272 0 2042 135 0 0 chr11 131986676 131986972 -18796581 + AluSx SINE Alu 3 298 -14 226 100 60 0 chr11 131987863 131987913 -18795640 + T-rich Low_complexity Low_complexity 5 57 0 2169 99 3 16 chr11 131990902 131991216 -18792337 - AluSq SINE Alu -2 311 2 2352 87 3 0 chr11 131992720 131993032 -18790521 - AluSp SINE Alu 0 313 1 2680 88 3 43 chr11 131993215 131993523 -18790030 + THE1B LTR MaLR 4 296 -68 2027 121 10 0 chr11 131993523 131993813 -18789740 - AluSp SINE Alu -20 293 1 2680 88 3 43 chr11 131993813 131993880 -18789673 + THE1B LTR MaLR 296 364 0 2308 106 0 0 chr11 131995157 131995469 -18788084 - AluSx SINE Alu 0 312 1 342 327 31 6 chr11 131996214 131996373 -18787180 + CT-rich Low_complexity Low_complexity 2 164 0 1751 176 3 0 chr11 131997024 131997313 -18786240 - AluJo SINE Alu -22 290 1 2239 94 3 0 chr11 131997354 131997652 -18785901 - AluSp SINE Alu -14 299 1 624 184 83 0 chr11 131998613 131998722 -18784831 - FLAM_C SINE Alu -15 118 1 1386 145 111 48 chr11 131999090 131999379 -18784174 + AluJb SINE Alu 1 307 -5 844 261 88 0 chr11 131999385 131999600 -18783953 - MIR SINE MIR -21 241 8 1294 181 48 81 chr11 131999625 131999744 -18783809 + AluJb SINE Alu 1 122 -180 1511 124 132 11 chr11 131999744 132000017 -18783536 - AluSg1 SINE Alu -3 306 1 1294 181 48 81 chr11 132000017 132000207 -18783346 + AluJb SINE Alu 122 300 -2 520 304 88 14 chr11 132000353 132000570 -18782983 + MIR SINE MIR 2 234 -28 298 302 214 28 chr11 132002119 132002301 -18781252 - MIR SINE MIR 0 262 47 268 333 0 11 chr11 132004323 132004410 -18779143 + L2 LINE L2 3180 3265 -7 440 239 27 92 chr11 132004418 132004480 -18779073 - MIR3 SINE MIR -1 207 143 2032 120 7 20 chr11 132004480 132004781 -18778772 - AluSg SINE Alu -13 297 1 440 239 27 92 chr11 132004781 132004902 -18778651 - MIR3 SINE MIR -65 143 36 1779 142 55 0 chr11 132005301 132005590 -18777963 - AluSq SINE Alu -8 305 1 1979 109 0 26 chr11 132006425 132006737 -18776816 - AluJb SINE Alu 0 312 9 460 270 20 29 chr11 132007780 132007952 -18775601 - MIR3 SINE MIR -63 145 5 615 129 0 30 chr11 132008596 132008697 -18774856 + FLAM_C SINE Alu 44 141 -2 1101 152 0 83 chr11 132008817 132009047 -18774506 + AluSx SINE Alu 1 211 -101 35 0 0 0 chr11 132009089 132009124 -18774429 + AT_rich Low_complexity Low_complexity 1 35 0 398 287 75 23 chr11 132009167 132009341 -18774212 - MIR SINE MIR -77 185 3 1277 141 10 26 chr11 132009574 132009766 -18773787 - MER5A DNA MER1_type 0 189 1 2098 131 0 0 chr11 132010643 132010949 -18772604 + AluSx SINE Alu 1 306 -6 1016 185 0 0 chr11 132010950 132011128 -18772425 + AluSg/x SINE Alu 131 308 -2 1724 137 10 20 chr11 132011492 132011792 -18771761 + AluSx SINE Alu 6 302 -10 2136 120 7 3 chr11 132013433 132013742 -18769811 + AluSx SINE Alu 1 310 -2 21 95 0 0 chr11 132015696 132015759 -18767794 + GC_rich Low_complexity Low_complexity 1 63 0 23 33 0 0 chr11 132015936 132015966 -18767587 + GC_rich Low_complexity Low_complexity 1 30 0 406 332 47 66 chr11 132019813 132020132 -18763421 - L2 LINE L2 -25 3247 2935 26 0 0 0 chr11 132022713 132022739 -18760814 + AT_rich Low_complexity Low_complexity 1 26 0 1719 129 30 48 chr11 132022743 132023038 -18760515 + AluJb SINE Alu 1 290 -22 2131 114 0 0 chr11 132023052 132023349 -18760204 + AluSg SINE Alu 1 297 -13 751 180 33 44 chr11 132025469 132025652 -18757901 + MIR SINE MIR 11 191 -71 544 251 108 12 chr11 132025853 132026020 -18757533 + MIR3 SINE MIR 21 203 -5 2391 126 8 19 chr11 132026165 132026539 -18757014 - L1PB4 LINE L1 -4 6152 5783 260 131 0 82 chr11 132026642 132026703 -18756850 - L1PB4 LINE L1 -367 5789 5734 2226 95 0 0 chr11 132027525 132027821 -18755732 - AluSg SINE Alu -13 297 2 26 0 0 0 chr11 132027912 132027938 -18755615 + AT_rich Low_complexity Low_complexity 1 26 0 209 309 0 0 chr11 132028054 132028109 -18755444 - L2 LINE L2 -6 3307 3253 2155 115 0 0 chr11 132028121 132028433 -18755120 - AluSx SINE Alu 0 312 1 568 360 85 31 chr11 132028547 132029152 -18754401 - L2 LINE L2 -223 3049 2421 251 346 111 21 chr11 132030660 132030903 -18752650 - L2 LINE L2 -17 3255 2991 2193 108 0 16 chr11 132030911 132031227 -18752326 + AluSx SINE Alu 1 311 -1 26 0 0 0 chr11 132034145 132034171 -18749382 + AT_rich Low_complexity Low_complexity 1 26 0 1643 133 34 48 chr11 132034175 132034469 -18749084 + AluJb SINE Alu 1 290 -22 2066 95 3 30 chr11 132034483 132034788 -18748765 + AluSg SINE Alu 1 297 -13 2253 85 10 3 chr11 132034790 132035096 -18748457 + AluSx SINE Alu 5 312 0 3055 93 25 37 chr11 132035096 132035398 -18748155 + L1MA4 LINE L1 5823 6118 -182 2128 113 3 7 chr11 132035398 132035708 -18747845 - AluSg SINE Alu -1 309 1 3055 93 25 37 chr11 132035708 132035887 -18747666 + L1MA4 LINE L1 6118 6298 -2 1558 143 16 78 chr11 132036528 132036877 -18746676 - AluJb SINE Alu 0 312 1 213 39 0 0 chr11 132037290 132037316 -18746237 + (T)n Simple_repeat Simple_repeat 1 26 0 231 36 0 0 chr11 132037467 132037495 -18746058 + (A)n Simple_repeat Simple_repeat 1 28 0 1262 173 25 25 chr11 132037508 132037786 -18745767 - MER90 LTR ERV1 -297 278 1 2116 107 3 7 chr11 132039072 132039381 -18744172 - AluSx SINE Alu -4 308 1 340 273 91 51 chr11 132039385 132039508 -18744045 - MIR SINE MIR -6 256 122 2216 98 0 0 chr11 132039508 132039803 -18743750 + AluSc SINE Alu 1 295 -14 340 273 91 51 chr11 132039803 132039855 -18743698 - MIR SINE MIR -140 122 74 243 109 78 0 chr11 132040694 132040758 -18742795 + T-rich Low_complexity Low_complexity 1 69 0 206 159 45 0 chr11 132042299 132042343 -18741210 + (CCCCAG)n Simple_repeat Simple_repeat 1 46 0 2373 89 0 3 chr11 132043734 132044047 -18739506 - AluSq SINE Alu 0 313 2 36 0 0 0 chr11 132045661 132045697 -18737856 + AT_rich Low_complexity Low_complexity 1 36 0 654 231 35 12 chr11 132045781 132045950 -18737603 + MIR SINE MIR 88 260 -2 224 298 96 0 chr11 132045948 132046042 -18737511 - L2 LINE L2 -243 3029 2927 * 1616 106 139 16 chr11 132046256 132046559 -18736994 + MER47A DNA MER2_type 27 366 0 1872 81 74 0 chr11 132047185 132047443 -18736110 - AluSp SINE Alu -30 283 7 889 155 27 0 chr11 132047769 132047917 -18735636 - AluJo SINE Alu -43 269 118 707 165 0 0 chr11 132047919 132048034 -18735519 - AluSp/q SINE Alu -10 303 189 269 93 47 0 chr11 132048034 132048077 -18735476 - AluSg/x SINE Alu -172 128 84 1053 189 0 35 chr11 132048077 132048163 -18735390 - AluJo SINE Alu -92 220 133 2121 105 3 3 chr11 132048163 132048457 -18735096 - AluSg SINE Alu -14 296 3 1053 189 0 35 chr11 132048457 132048598 -18734955 - AluJo SINE Alu -179 133 1 689 204 8 23 chr11 132048602 132048734 -18734819 - FLAM_C SINE Alu -1 132 3 2267 96 0 3 chr11 132048745 132049047 -18734506 - AluSx SINE Alu -11 301 1 374 351 48 4 chr11 132049049 132049244 -18734309 - MIR SINE MIR -38 224 16 228 135 0 0 chr11 132049470 132049507 -18734046 + (CA)n Simple_repeat Simple_repeat 1 37 0 1422 122 29 17 chr11 132049607 132049845 -18733708 + AluJb SINE Alu 61 301 -11 1928 109 3 14 chr11 132049857 132049992 -18733561 + AluSx SINE Alu 1 136 -176 2387 75 0 0 chr11 132049992 132050297 -18733256 + AluSg SINE Alu 1 305 -5 1928 109 3 14 chr11 132050297 132050454 -18733099 + AluSx SINE Alu 136 290 -22 2124 99 10 7 chr11 132050468 132050771 -18732782 + AluSq SINE Alu 1 304 -9 3751 24 7 0 chr11 132051297 132051721 -18731832 + SVA Other Other 960 1386 0 2231 82 0 0 chr11 132052001 132052292 -18731261 - AluSq SINE Alu -20 293 3 193 73 73 49 chr11 132052596 132052637 -18730916 + MIR SINE MIR 111 152 -56 1233 157 43 5 chr11 132055046 132055256 -18728297 + MER20 DNA MER1_type 1 218 -1 367 67 0 0 chr11 132056212 132056257 -18727296 - MER4E LTR ERV1 -69 697 653 386 319 163 50 chr11 132056265 132056954 -18726599 + L2 LINE L2 2534 3313 0 791 50 10 0 chr11 132059198 132059297 -18724256 - AluS SINE Alu -212 101 2 2196 103 0 0 chr11 132059633 132059925 -18723628 - AluSg SINE Alu -18 292 1 578 197 14 0 chr11 132059997 132060152 -18723401 + AluJb SINE Alu 154 294 -18 1650 162 14 20 chr11 132060164 132060461 -18723092 + AluJb SINE Alu 9 303 -9 1331 110 0 14 chr11 132060563 132060772 -18722781 + AluY SINE Alu 1 206 -105 1566 188 7 20 chr11 132060951 132061254 -18722299 - AluJo SINE Alu -2 310 12 1962 131 27 3 chr11 132061272 132061570 -18721983 - AluSx SINE Alu -7 305 1 181 349 28 9 chr11 132064154 132064260 -18719293 - L2 LINE L2 -185 3087 2980 2197 77 21 0 chr11 132064353 132064640 -18718913 + AluSc SINE Alu 1 293 -16 476 237 17 40 chr11 132065366 132065466 -18718087 + MER58C DNA MER1_type 32 128 -2292 1941 85 17 41 chr11 132065466 132065761 -18717792 + AluSx SINE Alu 1 288 -24 476 237 17 40 chr11 132065761 132065833 -18717720 + MER58C DNA MER1_type 128 200 -15 1395 174 62 18 chr11 132067584 132067859 -18715694 + AluJo SINE Alu 1 287 -15 1925 126 13 13 chr11 132068010 132068312 -18715241 - AluSx SINE Alu -10 302 1 1534 139 85 4 chr11 132068617 132068875 -18714678 - AluJb SINE Alu -33 279 1 1966 119 7 3 chr11 132068909 132069204 -18714349 + AluY SINE Alu 1 296 -15 589 108 216 0 chr11 132069300 132069411 -18714142 - L1MC1 LINE L1 -19 6314 6180 1282 184 61 4 chr11 132069420 132069681 -18713872 + L1MC1 LINE L1 6046 6321 -12 1497 173 10 57 chr11 132069867 132070035 -18713518 - AluJo SINE Alu -17 295 146 2201 110 0 17 chr11 132070035 132070335 -18713218 - AluSg SINE Alu -15 295 1 1497 173 10 57 chr11 132070335 132070467 -18713086 - AluJo SINE Alu -166 146 9 343 293 146 63 chr11 132070475 132071065 -18712488 - L2 LINE L2 -785 2529 1891 240 321 85 0 chr11 132072399 132072505 -18711048 + MIR SINE MIR 123 237 -25 183 318 65 65 chr11 132073704 132073905 -18709648 + L2 LINE L2 2391 2591 -723 2000 116 22 0 chr11 132074005 132074273 -18709280 + AluSx SINE Alu 1 274 -38 612 259 118 35 chr11 132074343 132074571 -18708982 - MIR SINE MIR -12 250 4 548 299 192 12 chr11 132074702 132075036 -18708517 + L3 LINE CR1 568 961 -616 2341 98 0 13 chr11 132075069 132075374 -18708179 + AluSq SINE Alu 1 301 -12 2479 72 0 7 chr11 132075383 132075687 -18707866 + AluSx SINE Alu 1 302 -10 581 221 8 0 chr11 132075693 132075820 -18707733 + FLAM_A SINE Alu 4 131 -11 487 301 64 32 chr11 132075831 132076050 -18707503 - L2 LINE L2 -939 2375 2150 234 313 119 15 chr11 132078492 132078626 -18704927 - L2 LINE L2 -231 3082 2935 808 211 20 0 chr11 132078978 132079130 -18704423 + AluJb SINE Alu 134 288 -24 207 267 0 0 chr11 132079179 132079224 -18704329 - L2 LINE L2 -3 3310 3266 201 39 0 0 chr11 132079333 132079359 -18704194 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2152 118 7 7 chr11 132079376 132079672 -18703881 - AluSp SINE Alu -16 297 2 2312 109 0 0 chr11 132079679 132079972 -18703581 - AluSx SINE Alu -19 293 1 708 175 0 28 chr11 132079975 132080118 -18703435 - AluSq/x SINE Alu -172 141 3 2324 92 0 0 chr11 132080125 132080434 -18703119 - AluSx SINE Alu 0 309 1 558 144 162 9 chr11 132080437 132080583 -18702970 - FRAM SINE Alu 0 183 21 809 126 0 0 chr11 132080588 132080699 -18702854 - AluSq SINE Alu -99 214 104 678 189 0 8 chr11 132080701 132080715 -18702838 - AluSq/x SINE Alu -180 133 120 2564 62 10 0 chr11 132080715 132081022 -18702531 - AluY SINE Alu 0 311 2 678 189 0 8 chr11 132081022 132081139 -18702414 - AluSq/x SINE Alu -193 120 3 2452 103 0 0 chr11 132081253 132081563 -18701990 + AluSg SINE Alu 1 310 0 330 348 34 39 chr11 132081599 132081832 -18701721 + L1M4 LINE L1 4462 4693 -1453 1538 190 55 0 chr11 132081843 132082117 -18701436 + AluJo SINE Alu 1 289 -23 1582 166 10 53 chr11 132082166 132082309 -18701244 + AluJo SINE Alu 4 129 -183 2366 103 0 0 chr11 132082309 132082621 -18700932 + AluSx SINE Alu 1 312 0 1582 166 10 53 chr11 132082621 132082779 -18700774 + AluJo SINE Alu 129 292 -20 21 0 0 0 chr11 132082779 132082800 -18700753 + AT_rich Low_complexity Low_complexity 1 21 0 2242 101 7 3 chr11 132082809 132083107 -18700446 + AluSg SINE Alu 1 299 -11 1189 117 0 18 chr11 132083107 132083278 -18700275 + AluSg/x SINE Alu 134 301 -11 874 187 0 35 chr11 132083294 132083465 -18700088 + FRAM SINE Alu 2 166 0 730 233 7 0 chr11 132083520 132083701 -18699852 + AluJb SINE Alu 137 318 0 2251 134 0 0 chr11 132083791 132084096 -18699457 + AluSx SINE Alu 1 305 -7 2408 109 3 0 chr11 132084098 132084410 -18699143 + AluSq SINE Alu 1 313 0 2378 93 10 0 chr11 132084435 132084736 -18698817 + AluSq SINE Alu 2 305 -8 1106 140 102 140 chr11 132084920 132085099 -18698454 - AluSq SINE Alu 0 303 140 2439 91 3 0 chr11 132085099 132085452 -18698101 - AluSx SINE Alu 0 312 1 1106 140 102 140 chr11 132085452 132085587 -18697966 - AluSq SINE Alu -163 140 1 1433 199 18 14 chr11 132085591 132085872 -18697681 - LTR38 LTR ERV1 -70 486 205 5459 95 6 3 chr11 132085872 132086575 -18696978 - LTR5 LTR ERVK 0 969 265 956 86 0 0 chr11 132086575 132086691 -18696862 - SVA Other Other -218 1168 1053 414 86 43 0 chr11 132086691 132086761 -18696792 - LTR5 LTR ERVK -896 73 1 290 133 0 0 chr11 132086762 132086805 -18696748 - LTR38 LTR ERV1 -347 209 167 289 207 35 0 chr11 132086805 132086863 -18696690 + AluJ/FLAM SINE Alu 1 60 -242 2347 88 3 3 chr11 132086863 132087160 -18696393 - AluY SINE Alu -14 297 1 632 116 223 0 chr11 132087160 132087281 -18696272 - AluSg SINE Alu -162 148 1 2110 112 7 3 chr11 132087282 132087576 -18695977 - AluSq SINE Alu -18 295 1 1983 157 3 3 chr11 132087587 132087887 -18695666 - AluSx SINE Alu -12 300 1 293 188 0 0 chr11 132087891 132087955 -18695598 - L1M4 LINE L1 -2573 3573 3510 27 0 0 0 chr11 132087984 132088011 -18695542 + GC_rich Low_complexity Low_complexity 1 27 0 5348 51 13 22 chr11 132088116 132088802 -18694751 - SVA Other Other -692 694 15 2259 110 3 0 chr11 132088834 132089124 -18694429 - AluSg SINE Alu -19 291 1 1506 98 7 88 chr11 132089379 132089685 -18693868 - AluY SINE Alu -9 302 22 221 229 0 0 chr11 132089862 132089910 -18693643 - L2 LINE L2 -1 3312 3265 789 120 8 0 chr11 132090181 132090298 -18693255 + FLAM_C SINE Alu 1 118 -15 25 0 0 0 chr11 132090298 132090323 -18693230 + AT_rich Low_complexity Low_complexity 1 25 0 2069 147 3 0 chr11 132090331 132090623 -18692930 + AluSx SINE Alu 1 293 -19 1514 137 9 4 chr11 132090631 132090857 -18692696 + 7SLRNA srpRNA srpRNA 1 227 -93 655 97 0 0 chr11 132090857 132090950 -18692603 + HY4 scRNA scRNA 1 93 0 550 155 21 0 chr11 132090971 132091068 -18692485 + 7SLRNA srpRNA srpRNA 212 310 -10 257 228 0 18 chr11 132091189 132091246 -18692307 + AluJ/FLAM SINE Alu 3 58 -244 2217 90 7 4 chr11 132091248 132091527 -18692026 + AluSx SINE Alu 17 296 -16 573 131 224 0 chr11 132091590 132091697 -18691856 - FLAM_C SINE Alu -2 131 1 2080 112 21 0 chr11 132091760 132092046 -18691507 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr11 132092589 132092611 -18690942 + AT_rich Low_complexity Low_complexity 1 22 0 301 157 0 20 chr11 132092630 132092685 -18690868 - AluJo/FRAM SINE Alu -56 246 200 1679 90 9 9 chr11 132092685 132092908 -18690645 - AluSq SINE Alu -90 223 1 1975 164 7 0 chr11 132093163 132093468 -18690085 - AluSx SINE Alu -5 307 1 1664 134 0 13 chr11 132093647 132093885 -18689668 - AluSx SINE Alu -72 240 6 290 298 101 19 chr11 132093890 132094048 -18689505 - L2 LINE L2 -9 3304 3134 2197 114 14 3 chr11 132094069 132094366 -18689187 + AluSx SINE Alu 1 300 -12 639 204 8 23 chr11 132094377 132094509 -18689044 + FLAM_C SINE Alu 3 132 -1 1140 189 0 35 chr11 132094513 132094654 -18688899 + AluJo SINE Alu 1 133 -179 2255 105 3 3 chr11 132094654 132094948 -18688605 + AluSg SINE Alu 3 296 -14 1140 189 0 35 chr11 132094948 132095034 -18688519 + AluJo SINE Alu 133 220 -92 270 93 47 0 chr11 132095034 132095077 -18688476 + AluSg/x SINE Alu 84 128 -172 665 165 0 0 chr11 132095077 132095192 -18688361 + AluSp/q SINE Alu 189 303 -10 947 155 27 0 chr11 132095194 132095342 -18688211 + AluJo SINE Alu 118 269 -43 2201 72 68 0 chr11 132095668 132095946 -18687607 + AluSp SINE Alu 7 303 -10 285 185 0 99 chr11 132095984 132096065 -18687488 + MIR SINE MIR 77 149 -113 1013 103 15 0 chr11 132096070 132096206 -18687347 + AluSg SINE Alu 1 138 -172 1994 94 8 8 chr11 132096962 132097227 -18686326 + AluSx SINE Alu 1 265 -47 1219 222 36 41 chr11 132097233 132097704 -18685849 - L1MD3 LINE L1 -2 8040 7584 613 44 0 67 chr11 132097712 132097802 -18685751 - HY4 scRNA scRNA -9 84 1 1805 152 38 3 chr11 132097805 132098094 -18685459 - AluJb SINE Alu -11 301 3 652 114 86 21 chr11 132098098 132098238 -18685315 - L1MC4 LINE L1 -450 7592 7444 2350 114 21 8 chr11 132098241 132098618 -18684935 - L1PA14 LINE L1 0 6161 5780 571 159 33 13 chr11 132098634 132098785 -18684768 + CT-rich Low_complexity Low_complexity 1 154 0 202 77 0 0 chr11 132098785 132098811 -18684742 + (TTCCC)n Simple_repeat Simple_repeat 2 27 0 1839 113 66 0 chr11 132098811 132099067 -18684486 - AluSq SINE Alu -40 273 1 370 330 49 11 chr11 132099082 132099263 -18684290 - MIR SINE MIR -50 212 16 246 128 0 0 chr11 132099489 132099528 -18684025 + (CA)n Simple_repeat Simple_repeat 1 39 0 212 267 0 0 chr11 132099531 132099576 -18683977 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 222 311 68 0 chr11 132099902 132099976 -18683577 + L2 LINE L2 3187 3265 -7 1617 91 0 30 chr11 132100101 132100331 -18683222 - AluSg/x SINE Alu -9 301 79 285 70 0 0 chr11 132100331 132100374 -18683179 - Alu SINE Alu -258 43 1 382 318 97 36 chr11 132100452 132100647 -18682906 - L1ME3 LINE L1 -265 5897 5691 577 280 42 91 chr11 132100652 132100896 -18682657 - L2 LINE L2 -1 3312 3058 1899 122 73 0 chr11 132100896 132101183 -18682370 - AluSg SINE Alu -2 308 1 2202 122 0 13 chr11 132101183 132101486 -18682067 - AluSx SINE Alu -12 300 1 577 280 42 91 chr11 132101486 132101647 -18681906 - L2 LINE L2 -253 3060 2926 1096 186 104 5 chr11 132101725 132101945 -18681608 - AluJo SINE Alu -22 290 49 1813 230 263 12 chr11 132101950 132101974 -18681579 - L2 LINE L2 -577 2737 2720 704 204 134 0 chr11 132101974 132102131 -18681422 + MER45A DNA AcHobo 1 178 0 1813 230 263 12 chr11 132102131 132102858 -18680695 - L2 LINE L2 -594 2720 1797 811 146 0 156 chr11 132102896 132103101 -18680452 - FRAM SINE Alu -2 174 2 553 222 16 0 chr11 132103106 132103232 -18680321 - L2 LINE L2 -1618 1696 1569 532 289 132 0 chr11 132103268 132103458 -18680095 + L2 LINE L2 924 1138 -2176 530 237 256 8 chr11 132103485 132103691 -18679862 - L2 LINE L2 -2356 958 804 1826 151 13 33 chr11 132103691 132103990 -18679563 - AluJb SINE Alu -19 293 1 530 237 256 8 chr11 132103990 132104045 -18679508 - L2 LINE L2 -2510 804 632 229 259 116 48 chr11 132104297 132104444 -18679109 - L1ME3 LINE L1 -2392 5416 5260 2228 97 3 7 chr11 132104529 132104819 -18678734 - AluSx SINE Alu -22 290 2 2200 99 10 3 chr11 132104827 132105120 -18678433 - AluSq SINE Alu -14 299 5 22 0 0 0 chr11 132105125 132105147 -18678406 + AT_rich Low_complexity Low_complexity 1 22 0 1494 209 145 6 chr11 132105159 132105656 -18677897 + L1ME1 LINE L1 5232 5861 -305 1979 92 57 21 chr11 132105665 132105947 -18677606 + AluSg SINE Alu 1 292 -18 744 167 0 0 chr11 132106514 132106628 -18676925 + FLAM_C SINE Alu 7 120 -23 1672 186 7 0 chr11 132107370 132107644 -18675909 + AluSx SINE Alu 1 276 -36 592 133 125 25 chr11 132107660 132107780 -18675773 + FLAM_C SINE Alu 1 132 -1 441 242 16 47 chr11 132107780 132107899 -18675654 - FLAM_A SINE Alu -194 117 1 1570 163 43 0 chr11 132108010 132108268 -18675285 - AluSx SINE Alu -25 287 19 314 194 173 84 chr11 132108361 132108552 -18675001 + Charlie4 DNA MER1_type 1751 1958 -3 234 0 0 0 chr11 132110041 132110067 -18673486 + (GGA)n Simple_repeat Simple_repeat 1 26 0 2219 65 4 0 chr11 132110842 132111105 -18672448 - AluSx SINE Alu -48 264 1 285 264 23 11 chr11 132111123 132111210 -18672343 + MIR3 SINE MIR 98 185 -23 1621 130 108 4 chr11 132111797 132112066 -18671487 - AluSp SINE Alu -16 297 1 1838 167 10 13 chr11 132112066 132112234 -18671319 - AluJb SINE Alu -14 298 130 1974 138 16 7 chr11 132112234 132112538 -18671015 - AluSx SINE Alu -4 308 2 1838 167 10 13 chr11 132112538 132112668 -18670885 - AluJb SINE Alu -182 130 1 762 180 15 97 chr11 132113054 132113134 -18670419 - MER5A DNA MER1_type 0 189 104 2310 111 0 0 chr11 132113134 132113432 -18670121 - AluSx SINE Alu -14 298 1 762 180 15 97 chr11 132113432 132113557 -18669996 - MER5A DNA MER1_type -85 104 1 221 336 43 47 chr11 132114159 132114370 -18669183 + MIR SINE MIR 42 251 -11 1990 140 0 56 chr11 132115959 132116145 -18667408 - AluSq SINE Alu -9 304 142 2490 56 30 0 chr11 132116145 132116447 -18667106 - AluY SINE Alu 0 311 1 1990 140 0 56 chr11 132116447 132116582 -18666971 - AluSq SINE Alu -171 142 1 2484 130 5 17 chr11 132116582 132116991 -18666562 - Tigger2 DNA MER2_type -1571 1147 744 1828 110 4 4 chr11 132117031 132117276 -18666277 + AluSq SINE Alu 55 299 -14 630 102 0 41 chr11 132117276 132117374 -18666179 - AluJo/FLAM SINE Alu -184 128 35 2811 123 103 148 chr11 132117398 132117901 -18665652 - Tigger2 DNA MER2_type -1933 785 212 871 112 0 0 chr11 132117901 132118017 -18665536 - AluSg/x SINE Alu -18 292 177 2811 123 103 148 chr11 132118017 132118220 -18665333 - Tigger2 DNA MER2_type -2506 212 1 767 184 0 0 chr11 132118279 132118404 -18665149 + FLAM_A SINE Alu 1 125 -8 2147 118 0 7 chr11 132118445 132118741 -18664812 + AluSq SINE Alu 1 294 -19 261 0 0 0 chr11 132118795 132118824 -18664729 + (TG)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chr11 132118823 132118847 -18664706 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 254 231 204 9 chr11 132118894 132119002 -18664551 - L2 LINE L2 -5 3267 3139 213 121 0 0 chr11 132119066 132119099 -18664454 + (TG)n Simple_repeat Simple_repeat 2 34 0 1257 139 0 0 chr11 132119375 132119548 -18664005 - AluSg/x SINE Alu -6 306 134 2334 92 3 16 chr11 132119548 132119864 -18663689 - AluSx SINE Alu 0 312 1 186 244 0 0 chr11 132120181 132120222 -18663331 - MIR SINE MIR -123 85 45 2270 112 3 0 chr11 132120656 132120959 -18662594 - AluSp SINE Alu -9 304 1 1756 175 11 0 chr11 132120993 132121279 -18662274 + AluJb SINE Alu 10 298 -14 1777 144 7 30 chr11 132121283 132121588 -18661965 + AluSx SINE Alu 1 298 -14 589 108 216 0 chr11 132121687 132121798 -18661755 - L1MC1 LINE L1 -19 6314 6180 1306 185 62 0 chr11 132121807 132122067 -18661486 + L1MC1 LINE L1 6046 6321 -12 1279 167 183 4 chr11 132122072 132122324 -18661229 + AluJo SINE Alu 2 298 -4 596 202 8 23 chr11 132122325 132122454 -18661099 + FLAM_C SINE Alu 1 127 -6 836 155 0 0 chr11 132122469 132122598 -18660955 + AluSg SINE Alu 1 129 -181 2574 48 0 0 chr11 132122717 132123027 -18660526 - AluY SINE Alu -1 310 1 505 203 17 17 chr11 132123040 132123158 -18660395 + MIR SINE MIR 90 207 -55 509 198 17 17 chr11 132123165 132123281 -18660272 - AluJo/FRAM SINE Alu -63 249 134 1462 102 5 0 chr11 132123281 132123486 -18660067 - AluSg/x SINE Alu -3 307 102 2205 81 0 17 chr11 132123502 132123797 -18659756 - AluSc SINE Alu -19 290 1 2116 108 0 7 chr11 132123802 132124098 -18659455 - AluSx SINE Alu -15 297 4 747 161 46 120 chr11 132124101 132124280 -18659273 + MLT2D LTR ERVL 214 376 -38 300 27 0 0 chr11 132124280 132124317 -18659236 + (CA)n Simple_repeat Simple_repeat 2 38 0 747 161 46 120 chr11 132124317 132124354 -18659199 + MLT2D LTR ERVL 376 414 0 721 176 16 8 chr11 132124758 132124883 -18658670 + FLAM_A SINE Alu 7 132 -10 310 344 135 14 chr11 132124947 132125235 -18658318 + L2 LINE L2 1692 2014 -1300 970 189 0 11 chr11 132125244 132125424 -18658129 - FRAM SINE Alu 0 176 1 398 357 196 11 chr11 132125432 132125659 -18657894 + L2 LINE L2 2070 2254 -1018 1906 227 91 39 chr11 132125659 132125728 -18657825 - MLT1F LTR MaLR 0 542 478 2233 114 0 0 chr11 132125728 132126027 -18657526 + AluSx SINE Alu 1 299 -13 1906 227 91 39 chr11 132126027 132126472 -18657081 - MLT1F LTR MaLR -64 478 1 398 357 196 11 chr11 132126472 132126504 -18657049 + L2 LINE L2 2254 2279 -993 2285 100 0 0 chr11 132126504 132126840 -18656713 - AluSx SINE Alu 0 312 1 398 357 196 11 chr11 132126840 132127381 -18656172 + L2 LINE L2 2279 3019 -253 337 283 61 0 chr11 132127388 132127487 -18656066 + L2 LINE L2 3168 3272 0 2049 130 3 3 chr11 132127802 132128103 -18655450 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr11 132128141 132128163 -18655390 + AT_rich Low_complexity Low_complexity 1 22 0 7131 44 33 2 chr11 132128163 132129461 -18654092 - L1PA6 LINE L1 -6 6148 4839 2118 111 3 0 chr11 132129478 132129776 -18653777 - AluSc SINE Alu -10 299 1 654 308 158 56 chr11 132129778 132130037 -18653516 - L3 LINE CR1 -108 1469 1238 1751 116 8 0 chr11 132130037 132130288 -18653265 - AluSq SINE Alu -7 306 54 654 308 158 56 chr11 132130288 132130469 -18653084 - L3 LINE CR1 -339 1238 1077 2403 76 0 6 chr11 132130469 132130784 -18652769 - AluSq SINE Alu 0 313 1 2208 98 0 13 chr11 132130793 132131098 -18652455 - AluSq SINE Alu -12 301 1 654 308 158 56 chr11 132131098 132131465 -18652088 - L3 LINE CR1 -507 1070 568 606 259 118 35 chr11 132131596 132131824 -18651729 + MIR SINE MIR 4 250 -12 1874 116 22 0 chr11 132131894 132132162 -18651391 - AluSx SINE Alu -38 274 1 304 342 148 29 chr11 132132262 132132680 -18650873 - L2 LINE L2 -723 2591 2124 256 321 85 0 chr11 132133545 132133651 -18649902 - MIR SINE MIR -25 237 123 442 303 141 58 chr11 132134986 132135576 -18647977 + L2 LINE L2 1891 2529 -785 714 196 0 29 chr11 132135577 132135715 -18647838 + FLAM_C SINE Alu 2 135 -8 2164 102 0 0 chr11 132135716 132136009 -18647544 + AluSx SINE Alu 1 293 -19 2018 118 7 7 chr11 132136016 132136312 -18647241 + AluSp SINE Alu 2 297 -16 279 283 54 11 chr11 132136898 132136990 -18646563 - MIR SINE MIR -62 146 51 1989 109 57 0 chr11 132138957 132139240 -18644313 - AluSg SINE Alu -10 300 2 2020 108 0 21 chr11 132139327 132139614 -18643939 - AluSc SINE Alu -25 284 4 1095 80 0 0 chr11 132139615 132139752 -18643801 - AluSq/x SINE Alu -176 137 1 236 375 0 0 chr11 132139764 132139852 -18643701 - MIR SINE MIR -68 140 53 288 250 108 75 chr11 132140116 132140236 -18643317 + MIR SINE MIR 17 140 -68 295 258 0 0 chr11 132140600 132140666 -18642887 - MIR SINE MIR -55 153 88 2341 68 0 19 chr11 132140731 132141041 -18642512 + AluY SINE Alu 1 304 -7 1937 131 0 45 chr11 132141059 132141373 -18642180 + AluSg SINE Alu 1 300 -10 189 121 0 0 chr11 132143543 132143576 -18639977 + (CA)n Simple_repeat Simple_repeat 2 34 0 264 395 33 14 chr11 132149398 132149608 -18633945 + L2 LINE L2 2546 2759 -555 2272 66 3 10 chr11 132149666 132149970 -18633583 - AluY SINE Alu -9 302 1 1145 45 0 0 chr11 132149970 132150104 -18633449 - AluSc SINE Alu -175 134 1 1961 139 65 34 chr11 132150149 132150502 -18633051 + THE1B LTR MaLR 1 364 0 2118 110 7 0 chr11 132150615 132150907 -18632646 - AluSg SINE Alu -6 304 11 1616 200 11 0 chr11 132150919 132151222 -18632331 - AluJb SINE Alu 0 306 1 1249 198 49 19 chr11 132151249 132151512 -18632041 - REP3 LTR ERV 0 562 292 3136 216 24 83 chr11 132151537 132152567 -18630986 - LTR5 LTR ERVK 0 969 1 1906 109 14 10 chr11 132152569 132152862 -18630691 - AluSg SINE Alu -16 294 1 1299 219 45 7 chr11 132152877 132153146 -18630407 - REP3 LTR ERV -257 305 27 254 241 0 0 chr11 132153205 132153259 -18630294 + L1MC4a LINE L1 6476 6529 -1279 1737 163 7 26 chr11 132153299 132153605 -18629948 + AluJb SINE Alu 1 300 -12 249 259 137 15 chr11 132153609 132153740 -18629813 + L1MC4 LINE L1 7526 7672 -370 320 298 131 0 chr11 132153955 132154123 -18629430 + L1MC4 LINE L1 7853 8042 0 1662 158 109 7 chr11 132154278 132154582 -18628971 - MER1B DNA MER1_type -1 338 4 2092 93 30 20 chr11 132154804 132155106 -18628447 - AluSx SINE Alu -7 305 1 235 250 186 40 chr11 132156180 132156304 -18627249 + L2 LINE L2 2924 3065 -248 821 215 0 6 chr11 132156733 132156896 -18626657 - AluSc SINE Alu -16 293 132 2485 26 0 13 chr11 132156897 132157200 -18626353 - AluYa5 SINE Alu -12 299 1 262 299 108 19 chr11 132157221 132157378 -18626175 + L2 LINE L2 3134 3304 -9 1564 134 0 13 chr11 132157383 132157621 -18625932 + AluSx SINE Alu 6 240 -72 1854 164 7 0 chr11 132157800 132158105 -18625448 + AluSx SINE Alu 1 307 -5 1574 90 9 9 chr11 132158360 132158583 -18624970 + AluSq SINE Alu 1 223 -90 301 157 0 20 chr11 132158583 132158638 -18624915 + AluJo/FRAM SINE Alu 200 246 -56 22 0 0 0 chr11 132158657 132158679 -18624874 + AT_rich Low_complexity Low_complexity 1 22 0 1952 112 21 0 chr11 132159222 132159508 -18624045 - AluSx SINE Alu -20 292 1 617 131 224 0 chr11 132159571 132159678 -18623875 + FLAM_C SINE Alu 1 131 -2 2433 61 0 0 chr11 132159741 132160036 -18623517 - AluY SINE Alu -16 295 1 362 239 141 25 chr11 132160061 132160113 -18623440 + L1MC5 LINE L1 7730 7775 -186 1752 100 17 0 chr11 132160113 132160353 -18623200 + AluSx SINE Alu 41 284 -28 477 0 0 0 chr11 132160353 132160406 -18623147 + (CA)n Simple_repeat Simple_repeat 2 54 0 362 239 141 25 chr11 132160406 132160515 -18623038 + L1MC5 LINE L1 7774 7911 -50 2132 92 0 0 chr11 132160534 132160818 -18622735 + AluSg SINE Alu 13 296 -14 537 188 20 10 chr11 132160820 132160921 -18622632 + AluJo SINE Alu 44 145 -167 2090 112 3 3 chr11 132160921 132161217 -18622336 + AluSp SINE Alu 1 296 -17 222 311 68 0 chr11 132161431 132161505 -18622048 + L2 LINE L2 3187 3265 -7 1759 82 0 0 chr11 132161628 132161861 -18621692 - AluY SINE Alu 0 311 79 291 70 0 0 chr11 132161861 132161904 -18621649 - AluY SINE Alu -258 43 1 397 323 97 36 chr11 132161982 132162177 -18621376 - L1ME3 LINE L1 -265 5897 5691 586 280 42 91 chr11 132162182 132162426 -18621127 - L2 LINE L2 -1 3312 3058 1777 115 73 3 chr11 132162426 132162714 -18620839 - AluSg SINE Alu -2 308 1 2071 122 0 13 chr11 132162714 132163017 -18620536 - AluSx SINE Alu -12 300 1 586 280 42 91 chr11 132163017 132163178 -18620375 - L2 LINE L2 -253 3060 2926 1017 186 104 5 chr11 132163256 132163476 -18620077 - AluJo SINE Alu -22 290 49 1828 230 263 12 chr11 132163481 132163505 -18620048 - L2 LINE L2 -577 2737 2720 765 198 134 0 chr11 132163505 132163662 -18619891 + MER45A DNA AcHobo 1 178 0 1828 230 263 12 chr11 132163662 132164389 -18619164 - L2 LINE L2 -594 2720 1797 618 156 20 161 chr11 132164432 132164631 -18618922 - FRAM SINE Alu -4 172 2 549 222 16 0 chr11 132164636 132164762 -18618791 - L2 LINE L2 -1618 1696 1569 537 289 132 0 chr11 132164798 132164988 -18618565 + L2 LINE L2 924 1138 -2176 538 237 256 8 chr11 132165015 132165221 -18618332 - L2 LINE L2 -2356 958 804 1702 151 13 33 chr11 132165221 132165520 -18618033 - AluJb SINE Alu -19 293 1 538 237 256 8 chr11 132165520 132165575 -18617978 - L2 LINE L2 -2510 804 632 238 341 129 11 chr11 132165681 132165968 -18617585 - L1ME3 LINE L1 -2456 5586 5266 2168 103 0 3 chr11 132166059 132166350 -18617203 - AluSx SINE Alu -22 290 1 635 212 17 0 chr11 132166464 132166582 -18616971 + AluJb SINE Alu 171 290 -22 600 302 98 41 chr11 132166739 132166823 -18616730 - L2 LINE L2 -832 2482 2404 1362 154 135 15 chr11 132166823 132166955 -18616598 + AluJo SINE Alu 1 116 -196 2038 107 3 3 chr11 132166955 132167255 -18616298 + AluSg SINE Alu 1 300 -10 1362 154 135 15 chr11 132167255 132167388 -18616165 + AluJo SINE Alu 116 298 -14 600 302 98 41 chr11 132167388 132167618 -18615935 - L2 LINE L2 -910 2404 2150 242 313 119 15 chr11 132170056 132170190 -18613363 - L2 LINE L2 -231 3082 2935 825 211 20 0 chr11 132170542 132170694 -18612859 + AluJb SINE Alu 134 288 -24 207 267 0 0 chr11 132170743 132170788 -18612765 - L2 LINE L2 -3 3310 3266 234 0 0 0 chr11 132170897 132170923 -18612630 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2018 118 7 7 chr11 132170940 132171236 -18612317 - AluSp SINE Alu -16 297 2 2146 105 0 3 chr11 132171243 132171537 -18612016 - AluSx SINE Alu -19 293 1 226 203 51 17 chr11 132171568 132171627 -18611926 - AluS SINE Alu -225 78 18 1125 148 8 137 chr11 132171627 132171726 -18611827 - AluJo SINE Alu -81 231 121 2343 108 3 0 chr11 132171726 132172031 -18611522 - AluSp SINE Alu -7 306 1 1125 148 8 137 chr11 132172031 132172134 -18611419 - AluJo SINE Alu -191 121 68 2394 75 0 0 chr11 132172134 132172416 -18611137 - AluSx SINE Alu -14 298 17 1125 148 8 137 chr11 132172416 132172475 -18611078 - AluJo SINE Alu -244 68 3 550 155 21 0 chr11 132172596 132172693 -18610860 - 7SLRNA srpRNA srpRNA -10 310 212 655 97 0 0 chr11 132172714 132172807 -18610746 - HY4 scRNA scRNA 0 93 1 1514 137 9 4 chr11 132172807 132173033 -18610520 - 7SLRNA srpRNA srpRNA -93 227 1 2069 147 3 0 chr11 132173041 132173333 -18610220 - AluSx SINE Alu -19 293 1 25 0 0 0 chr11 132173341 132173366 -18610187 + AT_rich Low_complexity Low_complexity 1 25 0 789 120 8 0 chr11 132173366 132173483 -18610070 - FLAM_C SINE Alu -15 118 1 221 229 0 0 chr11 132173754 132173802 -18609751 + L2 LINE L2 3265 3312 -1 2429 78 3 0 chr11 132173930 132174223 -18609330 + AluY SINE Alu 1 294 -17 180 0 0 0 chr11 132174634 132174654 -18608899 + (TC)n Simple_repeat Simple_repeat 1 20 0 2154 99 21 0 chr11 132174656 132174939 -18608614 - AluSq SINE Alu -24 289 1 749 168 15 0 chr11 132174943 132175074 -18608479 - FLAM_C SINE Alu 0 133 1 196 265 118 0 chr11 132177523 132177591 -18605962 + L2 LINE L2 3148 3223 -49 402 115 0 0 chr11 132177637 132177698 -18605855 + (GCTG)n Simple_repeat Simple_repeat 4 64 0 211 171 14 71 chr11 132178028 132178098 -18605455 + C-rich Low_complexity Low_complexity 3 68 0 1822 145 0 63 chr11 132178605 132178923 -18604630 + AluSx SINE Alu 1 298 -14 428 317 101 48 chr11 132179221 132179577 -18603976 + L2 LINE L2 2897 3271 -1 364 178 30 0 chr11 132179641 132179742 -18603811 + GA-rich Low_complexity Low_complexity 2 105 0 677 144 54 0 chr11 132179744 132179855 -18603698 + AluJo/FLAM SINE Alu 1 117 -195 1539 194 0 22 chr11 132179858 132180100 -18603453 - AluJo SINE Alu -41 271 34 4862 123 70 110 chr11 132180100 132180229 -18603324 - MER52C LTR ERV1 0 1278 1145 2137 110 7 0 chr11 132180229 132180539 -18603014 - AluSp SINE Alu 0 312 1 4862 123 70 110 chr11 132180539 132181740 -18601813 - MER52C LTR ERV1 -133 1145 1 1539 194 0 22 chr11 132181740 132181770 -18601783 - AluJo SINE Alu -278 34 5 1028 235 35 57 chr11 132181788 132181827 -18601726 - L1MB4 LINE L1 -6 6174 6136 2013 120 23 20 chr11 132181827 132182127 -18601426 + AluSx SINE Alu 1 301 -11 1028 235 35 57 chr11 132182127 132182457 -18601096 - L1MB4 LINE L1 -44 6136 5813 1371 119 6 0 chr11 132182504 132182681 -18600872 - AluSx SINE Alu -133 179 2 1302 174 7 50 chr11 132182688 132182940 -18600613 - L1MB4 LINE L1 -361 5822 5582 2063 128 39 16 chr11 132182940 132183246 -18600307 - AluSq SINE Alu 0 313 1 1302 174 7 50 chr11 132183246 132183274 -18600279 - L1MB4 LINE L1 -601 5582 5554 689 156 57 14 chr11 132183276 132183417 -18600136 - L1MB4 LINE L1 -711 5469 5323 335 149 277 11 chr11 132183417 132183447 -18600106 - AluJ/FLAM SINE Alu -232 70 49 1732 148 12 71 chr11 132183447 132183577 -18599976 + AluJo SINE Alu 7 143 -169 2412 81 14 0 chr11 132183577 132183873 -18599680 + AluSp SINE Alu 1 300 -13 1732 148 12 71 chr11 132183873 132184067 -18599486 + AluJo SINE Alu 143 312 0 335 149 277 11 chr11 132184067 132184130 -18599423 - AluJ/FLAM SINE Alu -253 49 14 1049 113 0 0 chr11 132184199 132184332 -18599221 + AluSx SINE Alu 1 133 -179 2182 107 0 3 chr11 132184369 132184693 -18598860 + AluSx SINE Alu 1 323 0 2288 125 0 0 chr11 132184693 132185006 -18598547 + AluSq SINE Alu 1 313 0 1331 82 0 18 chr11 132185014 132185185 -18598368 + AluSx SINE Alu 120 287 -25 1174 169 0 0 chr11 132185195 132185373 -18598180 + AluY SINE Alu 118 295 -16 2031 137 7 23 chr11 132185413 132185572 -18597981 - AluSx SINE Alu -18 294 141 2391 91 0 0 chr11 132185572 132185868 -18597685 - AluSg SINE Alu -14 296 1 2031 137 7 23 chr11 132185868 132186007 -18597546 - AluSx SINE Alu -171 141 1 362 147 0 53 chr11 132186012 132186087 -18597466 - FLAM_A SINE Alu 0 133 63 23 0 0 0 chr11 132186142 132186165 -18597388 + AT_rich Low_complexity Low_complexity 1 23 0 375 191 45 11 chr11 132186387 132186476 -18597077 + L1MC4 LINE L1 6966 7057 -985 2202 101 7 3 chr11 132186478 132186774 -18596779 + AluSx SINE Alu 1 297 -15 512 182 0 0 chr11 132186787 132186875 -18596678 - AluJo SINE Alu -11 301 214 713 210 0 0 chr11 132186878 132187016 -18596537 - AluJo SINE Alu -171 141 4 1680 195 30 8 chr11 132187029 132187398 -18596155 + L1MC4 LINE L1 7083 7459 -583 406 214 0 0 chr11 132187381 132187470 -18596083 + L1P LINE L1 4236 4324 -1822 * 2477 39 4 0 chr11 132187472 132187792 -18595761 + AluY SINE Alu 1 321 0 278 250 0 0 chr11 132187794 132187854 -18595699 + MER99 DNA DNA 242 301 -527 1264 119 76 23 chr11 132187854 132188081 -18595472 + L1P4 LINE L1 5101 5356 -809 2037 164 0 3 chr11 132188081 132188393 -18595160 - AluJb SINE Alu -1 311 1 1264 119 76 23 chr11 132188393 132188520 -18595033 + L1P4 LINE L1 5356 5475 -690 1130 105 0 7 chr11 132188626 132188779 -18594774 + AluSg/x SINE Alu 147 298 -14 299 146 0 0 chr11 132189033 132189081 -18594472 - HY4 scRNA scRNA 0 93 46 2131 116 32 117 chr11 132189081 132189279 -18594274 + MER4B LTR ERV1 1 214 -552 1858 179 0 13 chr11 132189279 132189592 -18593961 + AluJb SINE Alu 4 312 0 2131 116 32 117 chr11 132189592 132189664 -18593889 + MER4B LTR ERV1 214 291 -475 2406 81 7 7 chr11 132189664 132189972 -18593581 + AluSq SINE Alu 2 309 -4 2131 116 32 117 chr11 132189972 132190234 -18593319 + MER4B LTR ERV1 291 608 -158 2338 87 0 3 chr11 132190234 132190522 -18593031 + AluSq SINE Alu 6 292 -21 2131 116 32 117 chr11 132190522 132190669 -18592884 + MER4B LTR ERV1 608 766 0 369 62 0 0 chr11 132190669 132190717 -18592836 - HY4 scRNA scRNA -44 49 2 1001 151 54 0 chr11 132190836 132191002 -18592551 - AluJb SINE Alu -2 310 136 235 125 25 0 chr11 132191010 132191050 -18592503 - Alu SINE Alu -135 173 133 2311 115 0 3 chr11 132191050 132191363 -18592190 - AluSq SINE Alu -1 312 1 1661 143 32 0 chr11 132191365 132191616 -18591937 - AluSx SINE Alu -19 293 35 3789 91 43 0 chr11 132191616 132192145 -18591408 + MER41A LTR ERV1 3 554 0 1106 176 0 0 chr11 132192150 132192320 -18591233 - AluJo SINE Alu -142 170 1 539 101 39 163 chr11 132192364 132192516 -18591037 - LTR23 LTR ERV1 0 437 308 1990 93 50 4 chr11 132192516 132192796 -18590757 - AluSq SINE Alu -8 305 13 539 101 39 163 chr11 132192796 132192821 -18590732 - LTR23 LTR ERV1 -129 308 282 615 155 0 0 chr11 132192824 132192921 -18590632 + AluJ/FLAM SINE Alu 2 98 -214 225 0 0 0 chr11 132192945 132192970 -18590583 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1651 114 33 4 chr11 132192970 132193242 -18590311 - LTR23 LTR ERV1 -157 280 1 2249 101 7 0 chr11 132193340 132193637 -18589916 - AluSx SINE Alu -13 299 1 1709 175 3 10 chr11 132193835 132194138 -18589415 + AluY SINE Alu 1 301 -10 2271 159 71 14 chr11 132194157 132194592 -18588961 + MER21B LTR ERV1 402 861 -2 2552 70 0 10 chr11 132194889 132195202 -18588351 - AluY SINE Alu 0 311 2 2303 120 0 9 chr11 132195240 132195556 -18587997 - AluSq SINE Alu 0 313 1 1196 141 10 26 chr11 132196433 132196625 -18586928 + MER5A DNA MER1_type 1 189 0 403 287 75 23 chr11 132196858 132197032 -18586521 + MIR SINE MIR 3 185 -77 882 127 14 28 chr11 132197085 132197227 -18586326 - FLAM_C SINE Alu -1 142 3 185 212 0 0 chr11 132197322 132197355 -18586198 + L2 LINE L2 3264 3296 -17 733 152 0 0 chr11 132197452 132197564 -18585989 - AluJb SINE Alu -64 248 137 2092 136 23 0 chr11 132197564 132197866 -18585687 - AluSx SINE Alu -3 309 1 2111 117 0 0 chr11 132197901 132198175 -18585378 + AluSx SINE Alu 2 275 -37 903 38 30 8 chr11 132198180 132198311 -18585242 + (GAAA)n Simple_repeat Simple_repeat 4 137 0 410 235 105 19 chr11 132198446 132198601 -18584952 + MIR SINE MIR 38 213 -49 26 30 0 0 chr11 132199761 132199794 -18583759 + GC_rich Low_complexity Low_complexity 1 33 0 1551 167 50 6 chr11 132199993 132200311 -18583242 - L1MB4 LINE L1 -36 6144 5813 1371 119 6 0 chr11 132200358 132200535 -18583018 - AluSx SINE Alu -133 179 2 1332 191 79 29 chr11 132200539 132200799 -18582754 - L1MD3 LINE L1 -361 5822 5577 2094 133 40 0 chr11 132200799 132201100 -18582453 - AluSq SINE Alu 0 313 1 1332 191 79 29 chr11 132201100 132201271 -18582282 - L1MD3 LINE L1 -606 5577 5323 335 149 277 11 chr11 132201271 132201301 -18582252 - AluJ/FLAM SINE Alu -232 70 49 1803 150 16 38 chr11 132201301 132201431 -18582122 + AluJo SINE Alu 7 138 -174 2469 84 13 0 chr11 132201431 132201739 -18581814 + AluSp SINE Alu 1 312 -1 1803 150 16 38 chr11 132201739 132201921 -18581632 + AluJo SINE Alu 138 312 0 335 149 277 11 chr11 132201921 132201984 -18581569 - AluJ/FLAM SINE Alu -253 49 14 1049 113 0 0 chr11 132202053 132202186 -18581367 + AluSq/x SINE Alu 1 133 -179 2182 107 0 3 chr11 132202223 132202547 -18581006 + AluSx SINE Alu 1 323 0 2200 122 0 0 chr11 132202547 132202841 -18580712 + AluSx SINE Alu 1 294 -18 261 0 0 0 chr11 132202894 132202923 -18580630 + (TG)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chr11 132202922 132202946 -18580607 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 242 234 16 31 chr11 132203184 132203248 -18580305 + MER5A DNA MER1_type 9 71 -118 2302 98 3 0 chr11 132203255 132203551 -18580002 + AluSx SINE Alu 5 301 -11 2021 154 3 3 chr11 132204293 132204599 -18578954 + AluJb SINE Alu 1 306 -6 1943 139 3 41 chr11 132204622 132204939 -18578614 + AluSx SINE Alu 1 305 -7 2269 99 3 0 chr11 132205502 132205841 -18577712 - AluSp SINE Alu 0 340 1 2267 87 11 0 chr11 132207360 132207647 -18575906 + AluSg1 SINE Alu 1 290 -19 284 291 82 0 chr11 132207652 132207762 -18575791 + MIR SINE MIR 32 150 -112 696 317 58 4 chr11 132209813 132210056 -18573497 - MIR SINE MIR -4 258 3 306 67 0 0 chr11 132210769 132210814 -18572739 + (TG)n Simple_repeat Simple_repeat 2 46 0 1903 146 0 39 chr11 132211669 132211978 -18571575 - AluJb SINE Alu -15 297 1 555 333 63 31 chr11 132212046 132212301 -18571252 + L2 LINE L2 3010 3272 0 1271 179 122 0 chr11 132212414 132212677 -18570876 - 7SLRNA srpRNA srpRNA -20 300 6 959 175 18 6 chr11 132214142 132214308 -18569245 - FRAM SINE Alu -16 160 1 2252 118 3 0 chr11 132214312 132214608 -18568945 - AluSx SINE Alu -15 297 1 1223 131 17 0 chr11 132214764 132214940 -18568613 - AluSg/x SINE Alu -21 291 113 1103 115 0 0 chr11 132215435 132215574 -18567979 - AluSq/x SINE Alu -174 139 1 2076 118 16 16 chr11 132215588 132215892 -18567661 - AluSp SINE Alu -3 310 7 947 155 27 0 chr11 132216218 132216366 -18567187 - AluJo SINE Alu -43 269 118 665 165 0 0 chr11 132216368 132216483 -18567070 - AluSp/q SINE Alu -10 303 189 270 93 47 0 chr11 132216483 132216526 -18567027 - AluSg/x SINE Alu -172 128 84 1132 198 0 31 chr11 132216526 132216612 -18566941 - AluJo SINE Alu -92 220 133 1780 180 3 3 chr11 132216612 132216907 -18566646 - AluYa5 SINE Alu -14 297 3 1132 198 0 31 chr11 132216907 132217047 -18566506 - AluJo SINE Alu -179 133 1 639 204 8 23 chr11 132217051 132217183 -18566370 - FLAM_C SINE Alu -1 132 3 2434 100 0 0 chr11 132217194 132217495 -18566058 - AluSx SINE Alu -11 301 1 258 245 94 57 chr11 132217808 132217914 -18565639 + L2 LINE L2 3149 3258 -14 750 180 33 44 chr11 132219570 132219753 -18563800 + MIR SINE MIR 11 191 -71 562 256 101 12 chr11 132219954 132220122 -18563431 + MIR3 SINE MIR 21 203 -5 2184 128 8 19 chr11 132220266 132220640 -18562913 - L1PB4 LINE L1 -4 6152 5783 270 99 0 93 chr11 132220750 132220811 -18562742 - L1PB4 LINE L1 -374 5782 5728 2363 86 0 0 chr11 132221626 132221917 -18561636 - AluSx SINE Alu -13 299 9 2092 136 23 0 chr11 132221959 132222261 -18561292 + AluSx SINE Alu 1 309 -3 733 152 0 0 chr11 132222261 132222373 -18561180 + AluJb SINE Alu 137 248 -64 185 212 0 0 chr11 132222470 132222503 -18561050 - L2 LINE L2 -17 3296 3264 865 128 21 28 chr11 132222598 132222739 -18560814 + FLAM_C SINE Alu 3 142 -1 403 287 75 23 chr11 132222792 132222966 -18560587 - MIR SINE MIR -77 185 3 1262 146 10 26 chr11 132223199 132223391 -18560162 - MER5A DNA MER1_type 0 189 1 2196 118 0 6 chr11 132224267 132224582 -18558971 + AluSq SINE Alu 1 313 0 2476 61 0 6 chr11 132224620 132224931 -18558622 + AluY SINE Alu 2 310 -1 44 71 0 24 chr11 132225201 132225327 -18558226 + AT_rich Low_complexity Low_complexity 1 123 0 1219 244 3 3 chr11 132225329 132225640 -18557913 + AluY SINE Alu 1 311 0 2335 156 69 14 chr11 132225938 132226374 -18557179 - MER21B LTR ERV1 -2 861 402 216 0 0 0 chr11 132226393 132226417 -18557136 + (T)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr11 132226435 132226458 -18557095 + GC_rich Low_complexity Low_complexity 1 23 0 270 0 0 0 chr11 132228506 132228536 -18555017 + (CAGG)n Simple_repeat Simple_repeat 4 33 0 831 237 5 54 chr11 132228821 132229045 -18554508 - AluJo SINE Alu -97 215 3 1708 126 7 24 chr11 132229068 132229362 -18554191 - AluSx SINE Alu -23 289 1 182 231 31 46 chr11 132229506 132229571 -18553982 + MIR3 SINE MIR 6 69 -139 198 0 0 0 chr11 132229601 132229623 -18553930 + (A)n Simple_repeat Simple_repeat 1 22 0 263 245 94 57 chr11 132229679 132229785 -18553768 + L2 LINE L2 3149 3258 -14 201 256 0 0 chr11 132230133 132230176 -18553377 + L2 LINE L2 3268 3310 -3 825 211 20 0 chr11 132230225 132230377 -18553176 - AluJb SINE Alu -24 288 134 242 313 119 15 chr11 132230729 132230863 -18552690 + L2 LINE L2 2935 3082 -231 754 311 94 91 chr11 132233303 132233533 -18550020 + L2 LINE L2 2150 2378 -936 1534 138 123 11 chr11 132233533 132233666 -18549887 - AluJb SINE Alu -14 298 181 2372 73 0 0 chr11 132233666 132233966 -18549587 - AluSg SINE Alu -10 300 1 1534 138 123 11 chr11 132233966 132234100 -18549453 - AluJb SINE Alu -131 181 1 1896 135 13 13 chr11 132234107 132234411 -18549142 - AluJb SINE Alu -6 306 3 754 311 94 91 chr11 132234411 132234524 -18549029 + L2 LINE L2 2383 2494 -820 2370 76 3 0 chr11 132234524 132234828 -18548725 - AluY SINE Alu -6 305 1 754 311 94 91 chr11 132234828 132235300 -18548253 + L2 LINE L2 2494 2977 -337 2006 109 7 3 chr11 132235300 132235611 -18547942 + AluSq SINE Alu 1 312 0 1719 143 52 0 chr11 132235692 132235978 -18547575 + AluJo SINE Alu 2 302 -10 187 286 32 32 chr11 132236053 132236116 -18547437 + L3 LINE CR1 1416 1478 -99 320 230 27 0 chr11 132236247 132236321 -18547232 + MIR SINE MIR 116 191 -71 732 212 0 0 chr11 132236414 132236586 -18546967 - FLAM_C SINE Alu 0 172 1 726 272 30 10 chr11 132239534 132239736 -18543817 + MIR3 SINE MIR 2 207 -1 682 125 0 0 chr11 132239823 132239927 -18543626 - FLAM_C SINE Alu -4 139 36 328 250 188 0 chr11 132240056 132240152 -18543401 + MER81 DNA DNA 1 114 0 246 329 11 11 chr11 132240905 132241020 -18542533 + MIR SINE MIR 35 148 -94 1010 178 23 0 chr11 132241964 132242138 -18541415 - MER45A DNA AcHobo 0 178 1 1002 284 216 25 chr11 132244792 132245478 -18538075 - L3 LINE CR1 0 1577 761 973 196 0 22 chr11 132247606 132247785 -18535768 + FAM SINE Alu 1 175 0 702 143 107 0 chr11 132247869 132247981 -18535572 - FLAM_C SINE Alu -17 126 3 874 233 0 0 chr11 132248036 132248195 -18535358 - FRAM SINE Alu -6 160 2 550 178 9 37 chr11 132248255 132248279 -18535274 + AluSp SINE Alu 114 137 -176 2242 104 0 7 chr11 132248279 132248588 -18534965 + AluSx SINE Alu 1 307 -5 550 178 9 37 chr11 132248588 132248670 -18534883 + AluSp SINE Alu 137 217 -96 192 111 0 0 chr11 132252367 132252403 -18531150 + (TA)n Simple_repeat Simple_repeat 1 36 0 1712 129 4 8 chr11 132254278 132254541 -18529012 - AluSq SINE Alu -12 301 40 213 277 0 0 chr11 132255183 132255230 -18528323 + (TGG)n Simple_repeat Simple_repeat 2 48 0 246 261 287 5 chr11 132255230 132255425 -18528128 - MIR SINE MIR -10 252 3 209 228 70 0 chr11 132261146 132261203 -18522350 - L2 LINE L2 -2 3311 3251 2505 46 7 0 chr11 132262515 132262822 -18520731 - AluY SINE Alu -2 309 1 208 253 153 68 chr11 132262863 132263025 -18520528 + MIR SINE MIR 21 197 -11 228 242 158 11 chr11 132263283 132263378 -18520175 + LTR19A LTR ERV1 375 483 -3 2160 91 0 16 chr11 132263496 132263803 -18519750 + AluSx SINE Alu 1 302 -10 4007 35 28 0 chr11 132263827 132264479 -18519074 + L1P2 LINE L1 4844 5506 -648 372 295 155 10 chr11 132264776 132264969 -18518584 - MIR SINE MIR -29 233 13 345 291 74 24 chr11 132265027 132265174 -18518379 + MIR SINE MIR 17 165 -65 2112 110 10 0 chr11 132265265 132265574 -18517979 + AluSx SINE Alu 1 312 0 396 151 139 0 chr11 132266121 132266207 -18517346 - MIR SINE MIR -48 214 117 2303 88 0 13 chr11 132266331 132266636 -18516917 + AluSx SINE Alu 1 301 -11 326 237 0 76 chr11 132266818 132266936 -18516617 - L1ME3 LINE L1 0 6162 6054 504 104 0 0 chr11 132266959 132267026 -18516527 - AluSp/q SINE Alu -68 245 179 1035 90 210 0 chr11 132267027 132267227 -18516326 - Tigger2 DNA MER2_type -2476 242 1 813 184 0 0 chr11 132267286 132267411 -18516142 + FLAM_A SINE Alu 1 125 -8 2190 117 0 0 chr11 132267452 132267761 -18515792 + AluSq SINE Alu 1 309 -4 457 233 23 47 chr11 132267926 132268055 -18515498 - L2 LINE L2 -988 2326 2201 311 319 46 84 chr11 132268060 132268089 -18515464 + L1ME4a LINE L1 5836 5865 -256 2202 110 3 0 chr11 132268089 132268397 -18515156 + AluSp SINE Alu 1 309 -4 311 319 46 84 chr11 132268397 132268630 -18514923 + L1ME4a LINE L1 5865 6088 -33 1502 167 114 4 chr11 132268631 132268912 -18514641 - AluSx SINE Alu 0 312 1 1794 139 19 36 chr11 132268917 132269226 -18514327 - AluSx SINE Alu -6 306 3 180 0 0 0 chr11 132269236 132269256 -18514297 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3955 63 10 8 chr11 132269284 132269790 -18513763 - SVA Other Other 0 1386 880 309 273 146 0 chr11 132269890 132270000 -18513553 + MER5A DNA MER1_type 64 189 0 180 0 0 0 chr11 132270305 132270325 -18513228 + (TC)n Simple_repeat Simple_repeat 1 20 0 2055 112 7 0 chr11 132270327 132270614 -18512939 - AluSq SINE Alu -24 289 1 263 203 0 14 chr11 132270614 132270683 -18512870 + MLT1F LTR MaLR 475 542 0 970 189 0 11 chr11 132270918 132271098 -18512455 + FRAM SINE Alu 1 176 0 310 344 135 14 chr11 132271107 132271395 -18512158 - L2 LINE L2 -1300 2014 1692 721 176 16 8 chr11 132271459 132271584 -18511969 - FLAM_A SINE Alu -10 132 7 187 285 164 75 chr11 132271596 132271968 -18511585 - L2 LINE L2 -1677 1637 1233 727 170 41 119 chr11 132271989 132272027 -18511526 - MLT2D LTR ERVL 0 414 375 300 27 0 0 chr11 132272027 132272064 -18511489 + (TG)n Simple_repeat Simple_repeat 2 38 0 727 170 41 119 chr11 132272064 132272243 -18511310 - MLT2D LTR ERVL -39 375 214 2121 105 0 0 chr11 132272627 132272939 -18510614 + AluSq SINE Alu 1 312 0 1719 143 52 0 chr11 132273018 132273304 -18510249 + AluJo SINE Alu 2 302 -10 187 286 32 32 chr11 132273379 132273442 -18510111 + L3 LINE CR1 1416 1478 -99 320 230 27 0 chr11 132273573 132273647 -18509906 + MIR SINE MIR 116 191 -71 209 77 0 51 chr11 132273740 132273779 -18509774 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 732 212 0 0 chr11 132273779 132273912 -18509641 - FLAM_C SINE Alu 0 172 1 2188 123 0 3 chr11 132276673 132276966 -18506587 - AluSx SINE Alu -20 292 1 268 333 39 47 chr11 132277000 132277129 -18506424 + L2 LINE L2 3129 3256 -16 2313 89 17 0 chr11 132277163 132277456 -18506097 + AluSx SINE Alu 1 298 -14 1277 111 56 59 chr11 132278044 132278350 -18505203 + SVA Other Other 7 311 -1075 311 302 62 54 chr11 132278354 132278791 -18504762 + L2 LINE L2 2593 3078 -194 207 0 0 0 chr11 132278809 132278832 -18504721 + (T)n Simple_repeat Simple_repeat 1 23 0 243 88 0 0 chr11 132278951 132278985 -18504568 + (A)n Simple_repeat Simple_repeat 1 34 0 277 356 17 35 chr11 132278989 132279104 -18504449 + L3 LINE CR1 945 1057 -520 489 221 88 142 chr11 132279131 132279159 -18504394 + L3 LINE CR1 1194 1222 -355 1891 108 8 0 chr11 132279159 132279410 -18504143 + AluSq SINE Alu 54 306 -7 489 221 88 142 chr11 132279410 132279672 -18503881 + L3 LINE CR1 1222 1464 -113 2168 105 20 7 chr11 132279672 132279977 -18503576 + AluSc SINE Alu 1 309 0 489 221 88 142 chr11 132279977 132280038 -18503515 + L3 LINE CR1 1464 1527 -50 1910 154 20 3 chr11 132280038 132280343 -18503210 + AluJb SINE Alu 1 310 -2 285 203 0 0 chr11 132280565 132280624 -18502929 - AluJ/monomer SINE Alu 0 308 250 1756 107 4 0 chr11 132280734 132280967 -18502586 + AluSp SINE Alu 75 308 -5 1463 83 0 0 chr11 132280967 132281147 -18502406 + AluSp SINE Alu 134 313 0 651 37 0 0 chr11 132281280 132281361 -18502192 - AluY SINE Alu -228 82 2 596 210 0 8 chr11 132281375 132281494 -18502059 + MIR SINE MIR 90 207 -55 298 139 0 0 chr11 132281495 132281538 -18502015 + Alu SINE Alu 1 43 -265 2298 118 0 3 chr11 132281621 132281927 -18501626 - AluSx SINE Alu -3 309 5 242 234 16 31 chr11 132281934 132281998 -18501555 - MER5A DNA MER1_type -118 71 9 521 45 15 0 chr11 132332502 132332568 -18450985 - AluSq/x SINE Alu -180 132 66 252 289 78 0 chr11 132332893 132332983 -18450570 + MER57-int LTR ERV1 7065 7161 -376 892 285 58 18 chr11 132333063 132333389 -18450164 + MER93a LTR ERV1 63 401 -1 1183 199 9 0 chr11 132333389 132333605 -18449948 + MLT1E2 LTR MaLR 354 571 -55 832 138 7 62 chr11 132333605 132333750 -18449803 + FLAM_C SINE Alu 3 139 -4 232 200 18 0 chr11 132333750 132333805 -18449748 + MLT1E2 LTR MaLR 561 616 -8 583 344 59 22 chr11 132333809 132334132 -18449421 - L2 LINE L2 -2013 1301 967 186 333 94 19 chr11 132334132 132334345 -18449208 - L2 LINE L2 -2579 735 507 787 175 150 38 chr11 132334357 132334597 -18448956 + MLT1C LTR MaLR 47 313 -154 1610 157 34 0 chr11 132334597 132334865 -18448688 - AluJb SINE Alu -35 277 1 2406 63 0 3 chr11 132334871 132335170 -18448383 - AluSc SINE Alu -11 298 1 682 177 32 0 chr11 132336639 132336763 -18446790 + FLAM_A SINE Alu 1 128 -5 2211 105 3 0 chr11 132336879 132337184 -18446369 + AluSx SINE Alu 1 306 -6 554 293 59 12 chr11 132337187 132337440 -18446113 - L2 LINE L2 -832 2482 2218 448 215 0 21 chr11 132337490 132337583 -18445970 - MIR SINE MIR -25 237 147 2079 109 17 0 chr11 132337583 132337876 -18445677 - AluSx SINE Alu -14 298 1 515 224 68 80 chr11 132337876 132338022 -18445531 - HAL1 LINE L1 -224 2283 2140 2226 161 3 19 chr11 132338022 132338388 -18445165 - MLT1A1 LTR MaLR -3 362 3 515 224 68 80 chr11 132338388 132338504 -18445049 - HAL1 LINE L1 -367 2140 2024 23 0 0 0 chr11 132338518 132338541 -18445012 + AT_rich Low_complexity Low_complexity 1 23 0 239 179 15 45 chr11 132338541 132338608 -18444945 - L1MD3 LINE L1 -20 7975 7911 753 161 8 0 chr11 132338622 132338746 -18444807 - L1MD2 LINE L1 -69 6290 6166 569 333 101 27 chr11 132338746 132339192 -18444361 + L2 LINE L2 2512 3110 -203 852 176 0 0 chr11 132339192 132339323 -18444230 - FLAM_C SINE Alu -1 132 2 569 333 101 27 chr11 132339323 132339540 -18444013 + L2 LINE L2 3110 3309 -4 377 217 0 0 chr11 132339838 132339921 -18443632 - L1ME1 LINE L1 -5 6161 6079 375 189 0 27 chr11 132339953 132340027 -18443526 - L1MB2 LINE L1 0 6171 6100 861 109 0 31 chr11 132340027 132340155 -18443398 + AluJb SINE Alu 2 125 -187 1035 153 6 6 chr11 132340155 132340338 -18443215 - L1MB3 LINE L1 -59 6124 5942 269 136 86 49 chr11 132340345 132340426 -18443127 - L1MB2 LINE L1 0 6171 6088 1834 169 13 0 chr11 132340431 132340733 -18442820 - AluJo SINE Alu -6 306 1 721 264 43 19 chr11 132340810 132341018 -18442535 - MLT1J LTR MaLR -106 405 193 2258 64 0 3 chr11 132341837 132342153 -18441400 + AluSc SINE Alu 1 315 0 779 177 0 8 chr11 132342167 132342297 -18441256 + FLAM_A SINE Alu 5 133 0 619 189 8 8 chr11 132342303 132342425 -18441128 - L1MB5 LINE L1 -14 6160 6039 2120 108 7 0 chr11 132342830 132343125 -18440428 - AluSx SINE Alu -15 297 1 195 257 68 14 chr11 132343548 132343622 -18439931 - L2 LINE L2 -556 2758 2681 429 333 51 43 chr11 132343913 132344168 -18439385 - L2 LINE L2 -44 3228 2972 245 139 23 0 chr11 132344701 132344744 -18438809 + L1MC4 LINE L1 5783 5826 -1982 2073 122 26 0 chr11 132344746 132345050 -18438503 + AluSx SINE Alu 1 312 0 400 149 0 79 chr11 132345091 132345205 -18438348 + L1MC4 LINE L1 7015 7119 -923 1584 161 3 49 chr11 132345245 132345549 -18438004 + AluJb SINE Alu 1 290 -22 2144 180 39 86 chr11 132345606 132345774 -18437779 - Zaphod DNA AcHobo -5 4026 3852 2274 105 0 0 chr11 132345774 132346080 -18437473 + AluSx SINE Alu 1 306 -6 2144 180 39 86 chr11 132346080 132346406 -18437147 - Zaphod DNA AcHobo -179 3852 3512 1963 116 7 7 chr11 132346406 132346700 -18436853 - AluSx SINE Alu -18 294 1 1579 155 0 77 chr11 132346701 132347024 -18436529 - AluJb SINE Alu -14 298 1 2144 180 39 86 chr11 132347024 132347041 -18436512 - Zaphod DNA AcHobo -519 3512 3496 2042 91 3 24 chr11 132347041 132347337 -18436216 - AluSx SINE Alu -22 290 1 2144 180 39 86 chr11 132347337 132347517 -18436036 - Zaphod DNA AcHobo -535 3496 3364 1026 182 0 10 chr11 132347517 132347709 -18435844 - AluJo SINE Alu -5 307 118 692 128 68 17 chr11 132347751 132347868 -18435685 - AluSq/x SINE Alu -178 134 12 625 225 96 74 chr11 132347878 132348049 -18435504 - L1MC4a LINE L1 -1521 6287 6104 2262 96 0 3 chr11 132348049 132348352 -18435201 + AluSg SINE Alu 1 302 -8 625 225 96 74 chr11 132348352 132348504 -18435049 - L1MC4a LINE L1 -1704 6104 5957 * 5053 131 23 2 chr11 132348484 132348598 -18434955 + L1MC1 LINE L1 5170 5280 -1053 1645 150 9 75 chr11 132348598 132348726 -18434827 - 7SLRNA srpRNA srpRNA -1 319 184 1938 115 3 16 chr11 132348726 132349039 -18434514 - AluSc SINE Alu 0 309 1 1645 150 9 75 chr11 132349039 132349230 -18434323 - 7SLRNA srpRNA srpRNA -136 184 21 5053 131 23 2 chr11 132349230 132350127 -18433426 + L1MC1 LINE L1 5280 6179 -154 421 258 96 17 chr11 132350129 132350307 -18433246 - Zaphod DNA AcHobo -1077 2954 2763 564 168 18 36 chr11 132350335 132350502 -18433051 + CT-rich Low_complexity Low_complexity 1 164 0 1637 193 13 10 chr11 132350511 132350822 -18432731 - AluJb SINE Alu 0 312 1 1721 202 28 47 chr11 132350824 132351295 -18432258 - Zaphod DNA AcHobo -1272 2759 2298 328 206 147 10 chr11 132351281 132351383 -18432170 - Zaphod DNA AcHobo -3393 638 523 * 264 200 0 0 chr11 132351385 132351440 -18432113 + T-rich Low_complexity Low_complexity 1 55 0 2009 103 7 4 chr11 132351463 132351744 -18431809 + AluSx SINE Alu 7 288 -24 563 272 38 22 chr11 132351746 132351930 -18431623 - Zaphod DNA AcHobo -3799 232 46 303 288 24 16 chr11 132351939 132352064 -18431489 + L1MC4a LINE L1 6056 6181 -1627 336 321 64 43 chr11 132352730 132352870 -18430683 - L2 LINE L2 -955 2359 2217 1895 57 29 4 chr11 132353562 132353808 -18429745 + AluSg SINE Alu 1 252 -58 248 135 0 19 chr11 132354636 132354688 -18428865 + (CCCGA)n Simple_repeat Simple_repeat 3 53 0 270 178 67 31 chr11 132358599 132358671 -18424882 - MER91A DNA MER1_type -12 178 111 323 200 0 27 chr11 132360157 132360232 -18423321 + L2 LINE L2 3240 3312 -1 1795 164 0 19 chr11 132362233 132362543 -18421010 + AluJb SINE Alu 1 304 -8 388 229 38 9 chr11 132364222 132364327 -18419226 - MIR SINE MIR -65 143 36 210 91 0 0 chr11 132364840 132364873 -18418680 + (TGG)n Simple_repeat Simple_repeat 2 34 0 418 232 98 0 chr11 132366520 132366632 -18416921 - MIR SINE MIR -93 169 47 974 203 123 57 chr11 132367272 132367514 -18416039 + Charlie1b DNA MER1_type 4 273 -2488 2286 85 3 0 chr11 132367514 132367808 -18415745 - AluSp SINE Alu -18 295 1 974 203 123 57 chr11 132367808 132367881 -18415672 + Charlie1b DNA MER1_type 273 340 -183 735 157 0 0 chr11 132367881 132367989 -18415564 - FLAM_C SINE Alu -12 131 24 493 149 39 77 chr11 132367994 132368007 -18415546 + Charlie1b DNA MER1_type 318 330 -2431 2171 67 3 7 chr11 132368007 132368290 -18415263 + AluY SINE Alu 1 282 -29 493 149 39 77 chr11 132368290 132368457 -18415096 + Charlie1b DNA MER1_type 330 491 -32 2242 78 0 16 chr11 132368458 132368767 -18414786 + AluY SINE Alu 1 304 -7 2125 112 0 0 chr11 132368779 132369066 -18414487 + AluSx SINE Alu 1 287 -25 1695 182 0 0 chr11 132374436 132374727 -18408826 + AluJo SINE Alu 1 291 -21 1057 154 29 53 chr11 132374992 132375200 -18408353 + MER20 DNA MER1_type 1 203 -16 2126 79 7 14 chr11 132375204 132375494 -18408059 + AluSp SINE Alu 14 301 -12 2343 78 7 3 chr11 132375731 132376040 -18407513 - AluSp SINE Alu -3 310 1 356 265 53 15 chr11 132377009 132377141 -18406412 + MIR3 SINE MIR 66 202 -6 2247 89 3 3 chr11 132377281 132377585 -18405968 - AluSx SINE Alu -8 304 1 528 244 119 18 chr11 132377596 132377764 -18405789 - MIR3 SINE MIR -21 187 3 386 141 115 0 chr11 132378034 132378112 -18405441 + MIR SINE MIR 95 181 -81 1573 192 0 7 chr11 132378136 132378438 -18405115 + AluJb SINE Alu 1 300 -12 2163 94 10 10 chr11 132382558 132382857 -18400696 + AluY SINE Alu 1 299 -12 229 255 0 0 chr11 132383145 132383192 -18400361 + (TG)n Simple_repeat Simple_repeat 1 47 0 258 116 0 0 chr11 132383229 132383272 -18400281 + (TA)n Simple_repeat Simple_repeat 1 43 0 22 0 0 0 chr11 132383699 132383721 -18399832 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 132383943 132383966 -18399587 + AT_rich Low_complexity Low_complexity 1 23 0 2146 102 0 3 chr11 132386902 132387196 -18396357 + AluSg1 SINE Alu 1 293 -16 214 227 23 0 chr11 132388418 132388462 -18395091 + L2 LINE L2 3268 3312 -1 215 290 149 19 chr11 132393566 132393673 -18389880 - L2 LINE L2 0 3313 3193 1247 80 49 0 chr11 132394079 132394242 -18389311 + AluSx SINE Alu 3 173 -139 257 314 167 0 chr11 132395327 132395429 -18388124 - MIR SINE MIR -56 152 34 267 77 0 0 chr11 132395817 132395856 -18387697 - MADE1 DNA Mariner 0 80 42 281 311 114 5 chr11 132395883 132396076 -18387477 + L1MC4 LINE L1 7828 8041 -1 1378 164 12 31 chr11 132396127 132396383 -18387170 - AluJb SINE Alu -57 255 5 408 295 157 35 chr11 132396409 132396670 -18386883 + L1ME4a LINE L1 5479 5771 -2037 270 221 25 110 chr11 132396909 132397022 -18386531 + L1ME4a LINE L1 5961 6057 -64 2109 116 7 0 chr11 132397022 132397325 -18386228 - AluSc SINE Alu -4 305 1 270 221 25 110 chr11 132397325 132397374 -18386179 + L1ME4a LINE L1 6057 6109 -12 1981 115 14 0 chr11 132397398 132397686 -18385867 - AluSx SINE Alu -15 297 6 23 0 0 0 chr11 132397690 132397713 -18385840 + AT_rich Low_complexity Low_complexity 1 23 0 273 208 19 0 chr11 132397924 132397977 -18385576 + MSTD LTR MaLR 1 54 -342 853 195 13 0 chr11 132397991 132398145 -18385408 + MSTB2 LTR MaLR 300 455 -2 2135 107 0 10 chr11 132398434 132398732 -18384821 + AluSx SINE Alu 5 299 -13 268 191 0 0 chr11 132398802 132398849 -18384704 + Tigger5 DNA MER2_type 27 73 -2250 280 217 101 0 chr11 132398857 132398926 -18384627 - Tigger5 DNA MER2_type -6 2317 2242 * 411 150 0 0 chr11 132398922 132398982 -18384571 + Tigger5 DNA MER2_type 2264 2323 0 634 167 0 0 chr11 132398997 132399093 -18384460 + AluJo SINE Alu 90 185 -127 386 258 67 88 chr11 132399094 132399118 -18384435 + L1MDa LINE L1 1404 1427 -5113 2360 68 7 7 chr11 132399118 132399428 -18384125 + AluY SINE Alu 1 310 -1 386 258 67 88 chr11 132399428 132399643 -18383910 + L1MDa LINE L1 1427 1638 -4902 1877 145 14 3 chr11 132399685 132399974 -18383579 + AluSx SINE Alu 1 292 -20 1574 196 3 10 chr11 132400119 132400415 -18383138 - AluJb SINE Alu -18 294 1 1571 163 44 14 chr11 132400430 132400724 -18382829 - AluJb SINE Alu -9 303 1 416 236 12 91 chr11 132400724 132400860 -18382693 + L1M1 LINE L1 1494 1729 -4697 1829 102 25 35 chr11 132400860 132401178 -18382375 + AluSx SINE Alu 1 315 0 416 236 12 91 chr11 132401178 132401205 -18382348 + L1M1 LINE L1 1729 1757 -4669 1685 85 136 12 chr11 132401207 132401465 -18382088 - AluSc SINE Alu -19 290 1 1739 168 0 0 chr11 132401492 132401778 -18381775 + AluJb SINE Alu 1 286 -26 1468 190 3 29 chr11 132401787 132402098 -18381455 + AluJo SINE Alu 1 303 -9 598 114 0 88 chr11 132402160 132402274 -18381279 + U6 snRNA snRNA 1 104 -3 929 268 123 32 chr11 132402287 132402944 -18380609 + L1M1 LINE L1 2552 3268 -3158 293 160 0 0 chr11 132402946 132402996 -18380557 + MLT1A2 LTR MaLR 15 64 -310 751 230 52 35 chr11 132403055 132403229 -18380324 - MER8 DNA MER2_type -62 177 1 * 1051 217 28 89 chr11 132403229 132403555 -18379998 + MLT1A2 LTR MaLR 69 374 0 234 164 36 0 chr11 132403649 132403704 -18379849 + L1M1 LINE L1 3474 3530 -2896 309 248 112 16 chr11 132403710 132403835 -18379718 + L1ME4a LINE L1 5951 6087 -34 448 282 187 41 chr11 132404663 132405032 -18378521 + L2 LINE L2 2808 3230 -83 2064 113 3 3 chr11 132405529 132405822 -18377731 - AluSq SINE Alu -20 293 1 1923 159 0 0 chr11 132405917 132406225 -18377328 - AluJb SINE Alu -4 308 1 1312 161 136 18 chr11 132407264 132407537 -18376016 + AluJo SINE Alu 1 305 -7 651 120 93 0 chr11 132407680 132407788 -18375765 + FLAM_C SINE Alu 6 123 -20 2521 55 0 0 chr11 132407901 132408209 -18375344 + AluY SINE Alu 1 308 -3 1738 138 7 28 chr11 132410618 132410927 -18372626 - AluJb SINE Alu 0 303 1 385 235 38 68 chr11 132410929 132411061 -18372492 - MIR SINE MIR -59 149 22 2419 181 77 4 chr11 132411179 132411649 -18371904 - LTR53 LTR ERVL 0 519 16 450 269 87 94 chr11 132412099 132412374 -18371179 - L2 LINE L2 -15 3257 2985 293 277 9 27 chr11 132412410 132412522 -18371031 + MLT1E LTR MaLR 29 138 -455 330 194 16 0 chr11 132412784 132412846 -18370707 + MLT1F1 LTR MaLR 2 64 -503 2289 63 0 10 chr11 132412846 132413147 -18370406 + AluY SINE Alu 1 298 -13 1221 221 161 52 chr11 132413191 132413819 -18369734 + HAL1 LINE L1 1517 2212 -295 325 278 150 75 chr11 132413829 132414056 -18369497 + HAL1 LINE L1 2241 2484 -23 1153 226 27 50 chr11 132414981 132415278 -18368275 - AluJo SINE Alu -11 291 2 657 178 25 25 chr11 132415307 132415425 -18368128 - FLAM_C SINE Alu -15 118 1 21 0 0 0 chr11 132415449 132415470 -18368083 + AT_rich Low_complexity Low_complexity 1 21 0 1102 221 20 29 chr11 132415586 132415830 -18367723 + MIR SINE MIR 19 260 -2 417 224 20 0 chr11 132417154 132417252 -18366301 - MER58C DNA MER1_type -4 211 112 324 0 0 0 chr11 132417371 132417407 -18366146 + (TG)n Simple_repeat Simple_repeat 1 36 0 1810 97 4 4 chr11 132417439 132417687 -18365866 - AluSq SINE Alu -65 248 1 2052 140 7 0 chr11 132418762 132419069 -18364484 - AluSx SINE Alu -3 309 1 2114 92 13 13 chr11 132419187 132419491 -18364062 - AluSq SINE Alu -9 304 1 23 0 0 0 chr11 132420545 132420568 -18362985 + AT_rich Low_complexity Low_complexity 1 23 0 1104 200 114 43 chr11 132420945 132421225 -18362328 + AluJb SINE Alu 1 300 -2 620 208 0 25 chr11 132421243 132421363 -18362190 - FLAM_C SINE Alu -25 118 2 1301 192 91 14 chr11 132421393 132421669 -18361884 + AluJo SINE Alu 1 297 -15 367 286 73 34 chr11 132421827 132422005 -18361548 + L1ME LINE L1 5272 5456 -708 304 308 37 2 chr11 132422038 132422236 -18361317 + L1ME LINE L1 5543 5671 -499 2096 100 3 3 chr11 132422236 132422526 -18361027 + AluY SINE Alu 1 290 -21 23 0 0 0 chr11 132422954 132422977 -18360576 + AT_rich Low_complexity Low_complexity 1 23 0 820 134 8 8 chr11 132423777 132423911 -18359642 + AluSq/x SINE Alu 1 134 -178 1562 109 168 0 chr11 132423911 132424167 -18359386 + AluSx SINE Alu 1 299 -13 191 172 0 0 chr11 132424279 132424308 -18359245 + MIR SINE MIR 219 247 -15 1374 140 95 0 chr11 132424674 132424917 -18358636 + AluJo SINE Alu 45 310 -2 249 328 41 13 chr11 132424927 132425053 -18358500 + MIR SINE MIR 35 148 -60 197 299 17 60 chr11 132425429 132425546 -18358007 + L2 LINE L2 2949 3060 -212 186 309 18 0 chr11 132426171 132426226 -18357327 - MER5A DNA MER1_type -132 57 2 2216 118 3 0 chr11 132426960 132427257 -18356296 - AluSx SINE Alu -14 298 1 2432 103 0 3 chr11 132429054 132429366 -18354187 - AluSx SINE Alu -1 311 1 23 33 0 0 chr11 132432850 132432880 -18350673 + GC_rich Low_complexity Low_complexity 1 30 0 602 342 51 26 chr11 132434416 132434526 -18349027 - MIR SINE MIR -6 256 150 2621 74 0 0 chr11 132434526 132434837 -18348716 - AluSx SINE Alu -1 311 1 602 342 51 26 chr11 132434837 132434960 -18348593 - MIR SINE MIR -112 150 17 2294 99 13 7 chr11 132438539 132438841 -18344712 + AluSx SINE Alu 1 304 -8 463 255 166 0 chr11 132438940 132439097 -18344456 - MIR SINE MIR -7 255 73 367 319 121 6 chr11 132439678 132439844 -18343709 - MER5A DNA MER1_type -4 185 1 238 206 27 0 chr11 132440415 132440488 -18343065 + (TCCA)n Simple_repeat Simple_repeat 2 76 0 228 247 146 0 chr11 132442633 132442722 -18340831 - MIR3 SINE MIR -6 202 101 388 308 151 6 chr11 132443082 132443241 -18340312 - MIR3 SINE MIR -16 192 11 604 204 6 64 chr11 132443453 132443610 -18339943 + MIR SINE MIR 64 211 -51 37 69 0 0 chr11 132445616 132445688 -18337865 + AT_rich Low_complexity Low_complexity 1 72 0 452 258 25 37 chr11 132445745 132445908 -18337645 - MIR SINE MIR -42 220 60 288 315 82 14 chr11 132448068 132448214 -18335339 - MIR3 SINE MIR -9 199 44 513 265 115 35 chr11 132448245 132448445 -18335108 + MIR SINE MIR 46 261 -1 2365 59 16 13 chr11 132448554 132448859 -18334694 - AluY SINE Alu -5 306 1 197 294 25 67 chr11 132450994 132451113 -18332440 + L2 LINE L2 1335 1448 -1866 1384 78 50 55 chr11 132451209 132451382 -18332171 - AluSq SINE Alu 0 313 140 2200 103 10 7 chr11 132451382 132451673 -18331880 - AluSx SINE Alu -20 292 1 1384 78 50 55 chr11 132451673 132451718 -18331835 - AluSq SINE Alu -173 140 96 3225 219 129 113 chr11 132451747 132452232 -18331321 - L2 LINE L2 -5 3308 2833 1348 118 85 0 chr11 132452232 132452444 -18331109 + MER30 DNA MER1_type 1 230 0 3225 219 129 113 chr11 132452444 132452709 -18330844 - L2 LINE L2 -480 2833 2574 826 144 0 0 chr11 132452709 132452834 -18330719 + AluSg/x SINE Alu 176 300 -12 3225 219 129 113 chr11 132452834 132453885 -18329668 - L2 LINE L2 -739 2574 1315 836 198 32 21 chr11 132453885 132453947 -18329606 - MER5A DNA MER1_type 0 189 129 1513 140 5 0 chr11 132453947 132454161 -18329392 + AluJo SINE Alu 86 300 -12 836 198 32 21 chr11 132454161 132454285 -18329268 - MER5A DNA MER1_type -60 129 1 3225 219 129 113 chr11 132454285 132454401 -18329152 - L2 LINE L2 -1998 1315 1202 312 331 148 23 chr11 132454435 132454867 -18328686 + L2 LINE L2 1620 2105 -1209 464 291 92 62 chr11 132454879 132455005 -18328548 + MIR SINE MIR 4 125 -137 752 188 0 0 chr11 132455005 132455138 -18328415 + FLAM_A SINE Alu 1 133 0 2439 55 14 3 chr11 132455142 132455433 -18328120 + AluY SINE Alu 1 294 -17 464 291 92 62 chr11 132455433 132455528 -18328025 + MIR SINE MIR 127 237 -25 534 293 59 12 chr11 132455578 132455831 -18327722 + L2 LINE L2 2218 2482 -832 2356 105 3 0 chr11 132455834 132456139 -18327414 - AluSx SINE Alu -6 306 1 660 176 24 0 chr11 132456255 132456380 -18327173 - FLAM_A SINE Alu -5 128 1 2516 63 0 7 chr11 132457849 132458149 -18325404 + AluSc SINE Alu 1 298 -11 1725 157 34 0 chr11 132458155 132458423 -18325130 + AluJb SINE Alu 1 277 -35 764 175 150 38 chr11 132458423 132458663 -18324890 - MLT1C LTR MaLR -154 313 47 203 284 108 14 chr11 132458740 132458888 -18324665 + L2 LINE L2 574 735 -2579 561 344 59 22 chr11 132458888 132459211 -18324342 + L2 LINE L2 967 1301 -2013 281 147 29 59 chr11 132459215 132459283 -18324270 - MLT1H LTR MaLR -8 582 476 841 139 9 0 chr11 132459300 132459415 -18324138 - FLAM_C SINE Alu -25 118 3 1164 199 9 0 chr11 132459415 132459631 -18323922 - MLT1E2 LTR MaLR -55 571 354 890 285 58 18 chr11 132459631 132459957 -18323596 - MER93a LTR ERV1 -1 401 63 528 45 0 0 chr11 132460451 132460518 -18323035 + AluSq/x SINE Alu 66 132 -180 5244 180 12 21 chr11 132460631 132461302 -18322251 - L1PB1 LINE L1 0 6151 5475 285 29 0 0 chr11 132461302 132461336 -18322217 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2401 63 7 0 chr11 132461336 132461620 -18321933 - AluY SINE Alu -25 286 1 5244 180 12 21 chr11 132461620 132462194 -18321359 - L1PB1 LINE L1 -674 5477 4918 1962 170 0 0 chr11 132462233 132462522 -18321031 - AluJb SINE Alu -21 291 3 757 213 71 61 chr11 132462661 132463209 -18320344 - MER93a-int LTR ERV1 -203 4733 4110 3248 181 26 11 chr11 132463289 132463818 -18319735 - L1M1 LINE L1 -6928 637 96 189 0 0 0 chr11 132463818 132463839 -18319714 + (TG)n Simple_repeat Simple_repeat 2 22 0 3248 181 26 11 chr11 132463839 132463921 -18319632 - L1M1 LINE L1 -7469 96 17 255 230 68 75 chr11 132463928 132464128 -18319425 - MER31-int LTR ERV1 -2588 2348 2149 1751 176 16 22 chr11 132464128 132464440 -18319113 - AluSx SINE Alu -2 310 1 255 230 68 75 chr11 132464440 132464491 -18319062 - MER31-int LTR ERV1 -2787 2149 2099 1046 178 22 78 chr11 132464500 132464730 -18318823 - AluSg/x SINE Alu -7 303 87 1641 149 4 4 chr11 132464730 132464979 -18318574 - AluJb SINE Alu -3 309 61 1839 177 7 17 chr11 132464998 132465298 -18318255 - AluJb SINE Alu -15 297 1 2785 148 22 25 chr11 132465429 132465889 -18317664 - L1MA5 LINE L1 -2 6298 5839 1834 175 10 3 chr11 132465889 132466192 -18317361 - AluJb SINE Alu -5 307 3 2785 148 22 25 chr11 132466192 132466286 -18317267 - L1MA5 LINE L1 -461 5839 5746 14582 199 37 23 chr11 132466286 132467466 -18316087 + L1MA5A LINE L1 1693 2855 -3993 1876 171 0 0 chr11 132467466 132467752 -18315801 + AluJo SINE Alu 1 286 -26 14582 199 37 23 chr11 132467752 132468627 -18314926 + L1MA5A LINE L1 2855 3716 -3132 1707 181 17 17 chr11 132468627 132468926 -18314627 + AluJo SINE Alu 1 299 -13 14582 199 37 23 chr11 132468926 132471151 -18312402 + L1MA5A LINE L1 3716 6062 -786 198 0 0 0 chr11 132472050 132472072 -18311481 + (T)n Simple_repeat Simple_repeat 1 22 0 208 283 0 0 chr11 132472866 132472912 -18310641 + polypyrimidine Low_complexity Low_complexity 3 48 0 2216 106 13 10 chr11 132473989 132474291 -18309262 - AluSq SINE Alu -10 303 1 1981 140 3 10 chr11 132474353 132474646 -18308907 - AluJb SINE Alu -20 292 2 5748 105 11 29 chr11 132474695 132475294 -18308259 + L1MA5A LINE L1 6054 6662 -337 2412 41 4 0 chr11 132475294 132475563 -18307990 + AluY SINE Alu 35 304 -7 5748 105 11 29 chr11 132475563 132475705 -18307848 + L1MA5A LINE L1 6662 6805 -194 2023 131 18 35 chr11 132475705 132476048 -18307505 - MER1B DNA MER1_type 0 337 1 5748 105 11 29 chr11 132476048 132476249 -18307304 + L1MA5A LINE L1 6805 6980 -19 839 169 12 25 chr11 132476254 132476414 -18307139 - AluJo SINE Alu -18 294 137 32 57 0 0 chr11 132476417 132476470 -18307083 + AT_rich Low_complexity Low_complexity 1 53 0 2233 127 3 0 chr11 132476667 132476966 -18306587 - AluJb SINE Alu -12 300 1 360 214 3 23 chr11 132477468 132477618 -18305935 - MLT1E2 LTR MaLR -417 209 97 537 280 198 36 chr11 132477674 132477891 -18305662 + L2 LINE L2 1295 1476 -1838 847 153 0 15 chr11 132477891 132478022 -18305531 - AluJo SINE Alu -169 133 5 537 280 198 36 chr11 132478022 132478325 -18305228 + L2 LINE L2 1476 1899 -1415 1157 213 104 85 chr11 132478328 132478855 -18304698 - MLT1F LTR MaLR -5 537 1 1065 266 126 53 chr11 132478867 132479416 -18304137 + L2 LINE L2 1935 2523 -791 578 179 55 166 chr11 132479464 132479631 -18303922 - HAL1 LINE L1 0 2507 2323 218 79 0 26 chr11 132479631 132479669 -18303884 + (TA)n Simple_repeat Simple_repeat 1 37 0 578 179 55 166 chr11 132479669 132479763 -18303790 - HAL1 LINE L1 -184 2323 2220 2272 113 7 0 chr11 132479763 132480064 -18303489 - AluSq SINE Alu -10 303 1 578 179 55 166 chr11 132480064 132480210 -18303343 - HAL1 LINE L1 -287 2220 2159 2185 161 3 19 chr11 132480210 132480576 -18302977 - MLT1A1 LTR MaLR -3 362 3 578 179 55 166 chr11 132480576 132480653 -18302900 - HAL1 LINE L1 -348 2159 2075 23 0 0 0 chr11 132480706 132480729 -18302824 + AT_rich Low_complexity Low_complexity 1 23 0 242 179 15 45 chr11 132480729 132480796 -18302757 - L1MD3 LINE L1 -20 7975 7911 750 161 8 0 chr11 132480810 132480934 -18302619 - L1MD2 LINE L1 -69 6290 6166 624 317 103 30 chr11 132480934 132481381 -18302172 + L2 LINE L2 2512 3109 -204 856 176 0 0 chr11 132481381 132481512 -18302041 - FLAM_C SINE Alu -1 132 2 624 317 103 30 chr11 132481512 132481729 -18301824 + L2 LINE L2 3109 3309 -4 379 217 0 0 chr11 132482028 132482111 -18301442 - L1ME1 LINE L1 -5 6161 6079 367 176 0 27 chr11 132482143 132482217 -18301336 - L1MB2 LINE L1 0 6171 6100 911 109 0 31 chr11 132482217 132482345 -18301208 + AluJb SINE Alu 2 125 -187 1014 160 6 6 chr11 132482345 132482540 -18301013 - L1MB3 LINE L1 -59 6124 5930 284 136 86 49 chr11 132482537 132482618 -18300935 - L1MB2 LINE L1 0 6171 6088 * 1957 166 13 0 chr11 132482623 132482924 -18300629 - AluJo SINE Alu -7 305 1 1294 268 38 15 chr11 132483001 132483397 -18300156 - MLT1J LTR MaLR -106 405 1 207 290 234 0 chr11 132483442 132483549 -18300004 + L2 LINE L2 3141 3272 0 640 234 0 8 chr11 132483585 132483713 -18299840 - FLAM_A SINE Alu -2 131 5 2107 98 10 55 chr11 132483725 132484032 -18299521 - AluSx SINE Alu -15 297 5 224 350 154 0 chr11 132484056 132484276 -18299277 - L3 LINE CR1 -13 1564 1311 2108 99 64 0 chr11 132485090 132485373 -18298180 - AluSx SINE Alu -7 305 5 183 227 23 23 chr11 132489286 132489330 -18294223 + MER5A DNA MER1_type 111 154 -35 203 195 117 26 chr11 132489790 132489867 -18293686 + MIR SINE MIR 71 154 -108 634 188 11 83 chr11 132489908 132490089 -18293464 - L1MB2 LINE L1 -4 6167 6000 223 226 17 157 chr11 132490089 132490204 -18293349 + L2 LINE L2 3215 3313 0 1920 138 3 28 chr11 132494219 132494529 -18289024 - AluJb SINE Alu 0 303 1 387 235 38 68 chr11 132494531 132494663 -18288890 - MIR SINE MIR -59 149 22 2261 185 77 4 chr11 132494781 132495251 -18288302 - LTR53 LTR ERVL 0 519 16 453 269 87 94 chr11 132495701 132495976 -18287577 - L2 LINE L2 -15 3257 2985 269 277 9 27 chr11 132496012 132496124 -18287429 + MLT1E LTR MaLR 29 138 -455 876 232 38 65 chr11 132496386 132496448 -18287105 + MLT1G LTR MaLR 2 64 -526 2516 63 0 3 chr11 132496448 132496747 -18286806 + AluY SINE Alu 1 298 -13 876 232 38 65 chr11 132496747 132496947 -18286606 + MLT1G LTR MaLR 64 257 -333 1776 142 59 31 chr11 132497407 132497695 -18285858 + AluJb SINE Alu 2 297 -15 251 386 24 0 chr11 132497758 132497885 -18285668 + MLT1-int LTR MaLR 766 895 -476 461 276 89 60 chr11 132498051 132498399 -18285154 + MLT1-int LTR MaLR 1014 1371 0 331 252 225 8 chr11 132498649 132498826 -18284727 + MLT1H LTR MaLR 341 545 -4 2194 134 0 13 chr11 132499101 132499415 -18284138 + AluSx SINE Alu 1 310 -2 340 279 39 19 chr11 132499560 132499664 -18283889 + L2 LINE L2 3204 3309 -4 287 284 261 23 chr11 132499802 132500459 -18283094 - L2 LINE L2 -655 2659 1809 2084 188 118 4 chr11 132500459 132500960 -18282593 - MER74A LTR ERVL 0 558 1 287 284 261 23 chr11 132500960 132501033 -18282520 - L2 LINE L2 -1505 1809 1755 230 289 0 0 chr11 132501934 132501986 -18281567 + (CGTG)n Simple_repeat Simple_repeat 1 52 0 476 303 25 46 chr11 132502125 132502363 -18281190 + L2 LINE L2 2432 2664 -650 746 287 31 11 chr11 132502619 132502905 -18280648 - L1MC4a LINE L1 -1884 5924 5633 387 0 0 0 chr11 132502915 132502958 -18280595 + (TTA)n Simple_repeat Simple_repeat 1 43 0 1633 168 11 8 chr11 132502963 132503231 -18280322 - AluJo SINE Alu -43 269 1 375 291 201 32 chr11 132503273 132503551 -18280002 + L2 LINE L2 2205 2529 -785 455 269 131 19 chr11 132503725 132503885 -18279668 - MIR SINE MIR -21 241 64 306 321 209 19 chr11 132503914 132504182 -18279371 + L2 LINE L2 2622 2940 -374 961 162 43 22 chr11 132504253 132504438 -18279115 + MER20 DNA MER1_type 31 219 0 228 267 17 17 chr11 132504485 132504545 -18279008 + L2 LINE L2 3010 3069 -244 1674 159 0 0 chr11 132504741 132505011 -18278542 + Tigger3(Golem) DNA MER2_type 2758 3027 -2 230 224 0 0 chr11 132505657 132505715 -18277838 - MER96B DNA MER1_type? -1 416 359 1345 175 58 117 chr11 132505715 132505958 -18277595 - MLT1A2 LTR MaLR 0 374 161 5131 58 18 21 chr11 132505958 132506440 -18277113 - L1PA8 LINE L1 -1 6171 5690 2356 92 3 0 chr11 132506440 132506735 -18276818 - AluSp SINE Alu -17 296 1 5131 58 18 21 chr11 132506735 132506920 -18276633 - L1PA8 LINE L1 -482 5690 5506 1345 175 58 117 chr11 132506920 132507070 -18276483 - MLT1A2 LTR MaLR -213 161 4 263 209 146 9 chr11 132507077 132507148 -18276405 + MER96B DNA MER1_type? 55 115 -302 2038 138 0 23 chr11 132507148 132507453 -18276100 - AluSx SINE Alu -9 303 6 263 209 146 9 chr11 132507453 132507491 -18276062 + MER96B DNA MER1_type? 115 179 -238 380 296 25 35 chr11 132507615 132507818 -18275735 - L1ME3A LINE L1 -7 6163 5963 586 127 143 0 chr11 132507826 132507952 -18275601 - L1MB5 LINE L1 0 6174 6031 25 0 0 0 chr11 132507952 132507977 -18275576 + AT_rich Low_complexity Low_complexity 1 25 0 3041 156 8 150 chr11 132508002 132508018 -18275535 - L1MB4 LINE L1 -122 6058 6041 2236 117 0 0 chr11 132508018 132508309 -18275244 - AluSx SINE Alu -21 291 1 3041 156 8 150 chr11 132508309 132508721 -18274832 - L1MB4 LINE L1 -139 6041 5572 2259 121 3 10 chr11 132508721 132509034 -18274519 + AluSx SINE Alu 1 311 -1 3041 156 8 150 chr11 132509034 132509235 -18274318 - L1MB4 LINE L1 -608 5572 5588 2319 80 13 0 chr11 132509235 132509536 -18274017 - AluY SINE Alu -6 305 1 3041 156 8 150 chr11 132509536 132509875 -18273678 - L1MB4 LINE L1 -591 5589 5203 1529 186 7 91 chr11 132509876 132510123 -18273430 - MLT1A2 LTR MaLR 0 374 173 2363 140 20 59 chr11 132510123 132510187 -18273366 - MSTB LTR MaLR 0 426 361 2053 103 4 0 chr11 132510187 132510448 -18273105 + AluSx SINE Alu 1 262 -50 2363 140 20 59 chr11 132510448 132510826 -18272727 - MSTB LTR MaLR -65 361 1 1529 186 7 91 chr11 132510826 132510986 -18272567 - MLT1A2 LTR MaLR -201 173 1 5741 103 39 17 chr11 132511034 132511976 -18271577 - L1MA3 LINE L1 -5 6300 5338 1758 240 26 23 chr11 132511968 132512454 -18271099 - L1MB4 LINE L1 -946 5200 4715 * 412 241 17 0 chr11 132512454 132512570 -18270983 - L1ME3A LINE L1 -195 5975 4670 1687 216 15 7 chr11 132512875 132513287 -18270266 - L1MC4 LINE L1 -478 7564 7150 3303 144 8 2 chr11 132514497 132515030 -18268523 + L1MC1 LINE L1 5785 6320 -13 541 222 93 19 chr11 132515608 132515770 -18267783 - MIR SINE MIR -58 204 31 1678 153 0 117 chr11 132517407 132517740 -18265813 + AluJb SINE Alu 2 295 -7 22 0 0 0 chr11 132517773 132517795 -18265758 + AT_rich Low_complexity Low_complexity 1 22 0 1741 187 24 3 chr11 132517800 132518089 -18265464 - AluJo SINE Alu -16 296 2 2017 122 79 48 chr11 132518221 132518599 -18264954 + MLT1B LTR MaLR 1 390 0 1174 281 62 27 chr11 132518599 132519083 -18264470 - MLT1J LTR MaLR -7 504 4 2194 95 37 0 chr11 132519867 132520161 -18263392 - AluSx SINE Alu -7 305 1 189 296 37 0 chr11 132520363 132520417 -18263136 - L2 LINE L2 -561 2753 2698 873 159 0 0 chr11 132520752 132520884 -18262669 + FLAM_C SINE Alu 1 132 -1 408 216 0 34 chr11 132521190 132521278 -18262275 + L2 LINE L2 3187 3271 -1 399 212 103 43 chr11 132521474 132521658 -18261895 - MER112 DNA MER1_type -52 208 14 201 74 0 0 chr11 132522515 132522542 -18261011 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 263 310 107 11 chr11 132522884 132523071 -18260482 + L1MEd LINE L1 612 816 -5303 1692 157 4 0 chr11 132523093 132523374 -18260179 + MER7A DNA MER2_type 66 345 -1 1246 288 114 38 chr11 132523389 132523753 -18259800 + L1M4 LINE L1 2853 3188 -2958 2187 131 7 0 chr11 132523753 132524058 -18259495 + AluSg SINE Alu 1 307 -3 1246 288 114 38 chr11 132524058 132524371 -18259182 + L1M4 LINE L1 3188 3476 -2670 5212 68 28 6 chr11 132524371 132525062 -18258491 - L1PA10 LINE L1 -11 6157 5452 1246 288 114 38 chr11 132525062 132525593 -18257960 + L1M4 LINE L1 3476 3965 -2181 369 0 0 0 chr11 132525593 132525634 -18257919 + (CA)n Simple_repeat Simple_repeat 1 41 0 1246 288 114 38 chr11 132525634 132525913 -18257640 + L1M4 LINE L1 3965 4455 -1691 684 253 73 28 chr11 132525912 132526172 -18257381 + L1ME1 LINE L1 5907 6334 0 * 2081 108 40 7 chr11 132526204 132526500 -18257053 + AluSp SINE Alu 1 306 -7 2496 146 73 9 chr11 132526500 132526966 -18256587 + L1MB3 LINE L1 5688 6183 0 351 288 7 0 chr11 132526989 132527128 -18256425 + L1M4 LINE L1 5191 5330 -816 2506 54 7 3 chr11 132527129 132527425 -18256128 + AluY SINE Alu 13 309 -2 2503 129 30 2 chr11 132527440 132527843 -18255710 - LTR39 LTR ERV1 -369 414 1 321 286 20 10 chr11 132527847 132527945 -18255608 + MIR SINE MIR 150 248 -14 2156 126 26 43 chr11 132529409 132529758 -18253795 + MER2 DNA MER2_type 2 344 0 2123 111 0 3 chr11 132530666 132530964 -18252589 - AluSq SINE Alu -12 301 5 905 151 0 7 chr11 132530968 132531114 -18252439 - AluSg/x SINE Alu -11 301 157 16197 137 18 12 chr11 132531114 132531198 -18252355 - L1MA3 LINE L1 -477 7247 7165 2351 129 30 30 chr11 132531198 132531562 -18251991 + THE1B LTR MaLR 1 364 0 16197 137 18 12 chr11 132531562 132537583 -18245970 - L1MA3 LINE L1 -559 7165 1106 715 81 54 0 chr11 132537593 132537704 -18245849 - L1MA3 LINE L1 -7434 131 15 1741 184 0 19 chr11 132537708 132538024 -18245529 - AluJb SINE Alu 0 312 3 205 315 22 11 chr11 132538428 132538517 -18245036 - L2 LINE L2 -27 3286 3197 422 132 0 53 chr11 132540527 132540603 -18242950 + MLT1B LTR MaLR 6 77 -313 2273 141 52 10 chr11 132540603 132541007 -18242546 - Tigger2a DNA MER2_type 0 434 14 1387 209 35 16 chr11 132540987 132541303 -18242250 + MLT1B LTR MaLR 42 363 -27 * 326 230 97 35 chr11 132541303 132541416 -18242137 - MIR3 SINE MIR -25 183 64 215 211 0 0 chr11 132541598 132541636 -18241917 + (CGTG)n Simple_repeat Simple_repeat 4 41 0 1550 164 4 15 chr11 132541743 132542006 -18241547 + AluJb SINE Alu 10 269 -43 264 348 134 0 chr11 132542307 132542471 -18241082 - L2 LINE L2 -1020 2294 2109 256 225 238 0 chr11 132542488 132542568 -18240985 + MIR SINE MIR 106 204 -58 1577 201 34 3 chr11 132542591 132542889 -18240664 - MER7A DNA MER2_type 0 346 42 204 271 354 0 chr11 132542998 132543094 -18240459 - L3 LINE CR1 -555 1022 893 227 159 175 0 chr11 132544014 132544077 -18239476 + MLT1H LTR MaLR 373 446 -103 876 220 5 21 chr11 132544266 132544457 -18239096 - MER3 DNA MER1_type -19 190 3 866 193 11 8 chr11 132544586 132545056 -18238497 + (TGGA)n Simple_repeat Simple_repeat 1 471 0 261 242 88 0 chr11 132545807 132545898 -18237655 - L2 LINE L2 -5 3267 3169 341 304 83 83 chr11 132546009 132546249 -18237304 + MIR SINE MIR 21 260 -2 212 0 36 0 chr11 132546581 132546609 -18236944 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 880 179 0 0 chr11 132546611 132546756 -18236797 - FRAM SINE Alu -31 145 1 762 287 54 68 chr11 132546913 132547391 -18236162 - L1MC4a LINE L1 -108 6013 5542 669 289 93 0 chr11 132547547 132547793 -18235760 + L2 LINE L2 1235 1503 -1811 3341 183 70 21 chr11 132547827 132548538 -18235015 - L1MB7 LINE L1 0 6184 5439 2547 274 157 12 chr11 132548558 132550088 -18233465 + L2 LINE L2 1573 3311 -2 291 287 139 0 chr11 132550635 132550750 -18232803 + MIR SINE MIR 59 189 -73 222 378 15 22 chr11 132550891 132551026 -18232527 - L2 LINE L2 -1 3271 3138 269 277 6 5 chr11 132553307 132553493 -18230060 + (TG)n Simple_repeat Simple_repeat 1 186 0 211 298 24 0 chr11 132553806 132553890 -18229663 + L2 LINE L2 2467 2552 -762 454 282 70 33 chr11 132554174 132554387 -18229166 + L2 LINE L2 3077 3297 -16 231 114 0 0 chr11 132554395 132554430 -18229123 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 314 244 17 84 chr11 132554537 132554656 -18228897 - L2 LINE L2 -1 3312 3202 552 288 38 0 chr11 132556012 132556172 -18227381 + MIR SINE MIR 73 238 -24 2238 130 35 22 chr11 132556374 132556744 -18226809 - THE1C LTR MaLR 0 375 1 416 327 43 0 chr11 132556837 132556999 -18226554 + MIR SINE MIR 80 248 -14 180 294 147 29 chr11 132557008 132557110 -18226443 - MIR SINE MIR -40 222 109 230 243 14 14 chr11 132558489 132558563 -18224990 + (CCAA)n Simple_repeat Simple_repeat 1 74 0 361 303 0 0 chr11 132558597 132558719 -18224834 + (CCAA)n Simple_repeat Simple_repeat 3 124 0 431 143 11 44 chr11 132558732 132558823 -18224730 - LTR41 LTR ERVL -12 761 674 342 276 11 129 chr11 132559249 132559521 -18224032 - LTR41 LTR ERVL -70 703 464 623 279 0 16 chr11 132559560 132559743 -18223810 - LTR41 LTR ERVL -593 180 1 227 310 10 0 chr11 132559759 132559859 -18223694 + (CCAA)n Simple_repeat Simple_repeat 4 104 0 216 205 103 39 chr11 132559926 132560004 -18223549 - L2 LINE L2 -37 3276 3194 499 288 94 9 chr11 132561666 132561878 -18221675 + MIR SINE MIR 26 255 -7 188 331 11 15 chr11 132563471 132563566 -18219987 - MIR SINE MIR -85 123 28 212 315 153 9 chr11 132564416 132564527 -18219026 + MIR SINE MIR 20 146 -62 1166 168 22 0 chr11 132564893 132565078 -18218475 - MER5A DNA MER1_type 0 189 1 598 259 81 25 chr11 132566445 132566642 -18216911 + MIR SINE MIR 40 247 -15 245 254 0 42 chr11 132568642 132568713 -18214840 - MIR SINE MIR 0 262 195 866 180 12 41 chr11 132568714 132568886 -18214667 + AluJb SINE Alu 135 301 -11 192 320 62 39 chr11 132568914 132568948 -18214605 - MIR SINE MIR -119 143 111 2206 137 34 14 chr11 132568948 132569305 -18214248 + THE1B LTR MaLR 1 364 0 192 320 62 39 chr11 132569305 132569398 -18214155 - MIR SINE MIR -151 111 13 398 269 21 52 chr11 132569510 132569713 -18213840 + MIR SINE MIR 17 212 -50 1786 147 0 45 chr11 132569868 132570181 -18213372 + AluJo SINE Alu 6 304 -8 227 200 0 0 chr11 132570554 132570599 -18212954 + (CA)n Simple_repeat Simple_repeat 1 45 0 188 268 171 12 chr11 132570799 132570881 -18212672 - MIR SINE MIR -94 114 20 1550 215 24 77 chr11 132571870 132572015 -18211538 - MLT1H LTR MaLR -106 443 292 2434 158 63 0 chr11 132572015 132572413 -18211140 + MSTB LTR MaLR 4 426 0 1550 215 24 77 chr11 132572413 132572733 -18210820 - MLT1H LTR MaLR -257 292 3 319 273 0 23 chr11 132572907 132572995 -18210558 + MIR3 SINE MIR 78 163 -45 935 211 0 0 chr11 132573265 132573431 -18210122 + AluJb SINE Alu 85 250 -62 287 289 116 58 chr11 132573741 132573914 -18209639 - MIR SINE MIR -6 256 74 237 347 25 16 chr11 132574054 132574175 -18209378 + L3b LINE CR1 1293 1414 -169 589 162 0 60 chr11 132574198 132574315 -18209238 + FLAM_C SINE Alu 34 143 0 444 231 300 0 chr11 132574328 132574488 -18209065 - MIR SINE MIR -21 241 34 960 174 111 0 chr11 132575394 132575566 -18207987 - MER21B LTR ERV1 -364 499 309 374 40 27 40 chr11 132575568 132575643 -18207910 + (TTTA)n Simple_repeat Simple_repeat 3 76 0 8715 34 7 219 chr11 132575643 132577357 -18206196 - SVA Other Other -23 1363 14 369 0 0 0 chr11 132577411 132577452 -18206101 + (TG)n Simple_repeat Simple_repeat 1 41 0 1518 164 51 7 chr11 132577524 132577799 -18205754 + AluJo SINE Alu 1 287 -25 2035 173 25 6 chr11 132577933 132578291 -18205262 + MLT1A1 LTR MaLR 1 365 0 1145 311 31 47 chr11 132578294 132578848 -18204705 - LTR67 LTR ERVL -10 547 3 294 264 36 36 chr11 132578864 132578974 -18204579 + L2 LINE L2 3163 3272 0 330 234 115 78 chr11 132579294 132579486 -18204067 + MLT1L LTR MaLR 18 216 -399 381 93 0 0 chr11 132579642 132579696 -18203857 + (CA)n Simple_repeat Simple_repeat 2 55 0 327 304 56 63 chr11 132580945 132581248 -18202305 - L2 LINE L2 -20 3252 2952 254 278 31 41 chr11 132581918 132582015 -18201538 - MIR SINE MIR -74 188 93 284 268 12 24 chr11 132582469 132582551 -18201002 + MIR SINE MIR 52 132 -76 450 280 51 79 chr11 132582823 132583037 -18200516 + MIR SINE MIR 36 243 -19 191 278 19 0 chr11 132583384 132583438 -18200115 - L2 LINE L2 -5 3308 3254 314 311 52 15 chr11 132583635 132583770 -18199783 + MIR3 SINE MIR 63 202 -6 189 162 0 0 chr11 132583792 132583829 -18199724 - L3b LINE CR1 -217 1366 1330 2297 129 0 0 chr11 132583926 132584237 -18199316 - AluSx SINE Alu -1 311 1 247 359 91 24 chr11 132585333 132585542 -18198011 - MIR SINE MIR -6 256 34 665 326 82 3 chr11 132585653 132585957 -18197596 - MARNA DNA Mariner -15 571 244 2423 92 3 0 chr11 132586356 132586649 -18196904 - AluSp SINE Alu -19 294 1 437 271 70 35 chr11 132587108 132587307 -18196246 + MIR SINE MIR 36 250 -12 202 205 0 0 chr11 132587374 132587413 -18196140 + G-rich Low_complexity Low_complexity 3 41 0 360 0 0 0 chr11 132587672 132587712 -18195841 + (TG)n Simple_repeat Simple_repeat 1 40 0 225 276 60 60 chr11 132589970 132590104 -18193449 - MIR SINE MIR -44 218 85 2206 131 0 0 chr11 132591407 132591705 -18191848 - AluSx SINE Alu -14 298 1 366 61 0 0 chr11 132592336 132592385 -18191168 + (TG)n Simple_repeat Simple_repeat 2 50 0 632 264 33 6 chr11 132593506 132593688 -18189865 + L2 LINE L2 2256 2442 -872 1306 157 38 6 chr11 132593697 132594106 -18189447 - LTR54 LTR ERV1 -28 482 1 801 245 192 27 chr11 132594151 132594794 -18188759 + L2 LINE L2 2525 3276 -37 1976 116 18 4 chr11 132594894 132595170 -18188383 + AluSx SINE Alu 30 309 -3 337 246 158 31 chr11 132595277 132595552 -18188001 + LTR33 LTR ERVL 172 521 0 2401 79 7 0 chr11 132596955 132597246 -18186307 + AluSx SINE Alu 1 293 -19 1037 229 100 31 chr11 132597758 132598108 -18185445 + MLT1A2 LTR MaLR 1 374 0 990 192 0 22 chr11 132598955 132599137 -18184416 + AluJb SINE Alu 131 308 -4 362 301 106 59 chr11 132599487 132599723 -18183830 - L2 LINE L2 -73 3199 2953 387 247 93 33 chr11 132600491 132600641 -18182912 + MIR SINE MIR 14 172 -90 3321 139 13 0 chr11 132601452 132601976 -18181577 + LTR26B LTR ERV1 1 531 0 251 133 17 50 chr11 132603308 132603368 -18180185 + MLT1K LTR MaLR 510 567 -21 474 252 26 0 chr11 132603764 132603879 -18179674 + MIR SINE MIR 29 146 -62 363 246 69 23 chr11 132605064 132605194 -18178359 + MER91C DNA MER1_type 1 136 -4 356 319 226 1 chr11 132605308 132605513 -18178040 + MIR SINE MIR 3 251 -11 189 0 0 0 chr11 132605647 132605668 -18177885 + (TA)n Simple_repeat Simple_repeat 2 22 0 2300 108 0 0 chr11 132605668 132605963 -18177590 - AluSg SINE Alu -15 295 1 1877 115 163 21 chr11 132606683 132607057 -18176496 - MSTA LTR MaLR 0 428 2 1733 181 15 0 chr11 132607067 132607337 -18176216 - AluJo SINE Alu -38 274 1 500 316 30 18 chr11 132607417 132607585 -18175968 + MIR SINE MIR 23 192 -70 1887 174 0 13 chr11 132608994 132609293 -18174260 - AluJo SINE Alu -17 295 1 1881 200 67 10 chr11 132609293 132609698 -18173855 + MSTB1 LTR MaLR 5 432 0 735 157 7 21 chr11 132609707 132609847 -18173706 + MLT1B LTR MaLR 1 138 -236 434 182 45 0 chr11 132609876 132609964 -18173589 + LOR1b LTR ERV1 79 170 -291 2032 152 17 0 chr11 132609969 132610271 -18173282 + AluJo SINE Alu 6 312 0 999 104 0 0 chr11 132610402 132610536 -18173017 - FLAM_C SINE Alu 0 143 10 1352 210 31 28 chr11 132610614 132611037 -18172516 - L1MEc LINE L1 -5327 1069 646 479 264 196 29 chr11 132611183 132611459 -18172094 - L1MEc LINE L1 -5963 433 112 2328 123 7 0 chr11 132611468 132611778 -18171775 - AluSx SINE Alu 0 312 1 291 54 0 0 chr11 132611975 132612012 -18171541 + (A)n Simple_repeat Simple_repeat 1 37 0 419 148 21 12 chr11 132612025 132612128 -18171425 + LOR1a LTR ERV1 167 308 -189 * 887 190 40 18 chr11 132612113 132612373 -18171180 + LOR1a LTR ERV1 182 488 -9 866 196 15 109 chr11 132612380 132612645 -18170908 + MLT1B LTR MaLR 135 386 0 210 215 83 0 chr11 132613085 132613206 -18170347 + (CAGCC)n Simple_repeat Simple_repeat 5 135 0 429 340 47 33 chr11 132613787 132614002 -18169551 + MIR SINE MIR 10 227 -35 447 286 30 116 chr11 132614105 132614434 -18169119 - L2 LINE L2 -171 3142 2842 1634 172 22 50 chr11 132614720 132614864 -18168689 + AluJb SINE Alu 1 148 -164 2106 129 7 0 chr11 132614864 132615158 -18168395 + AluSx SINE Alu 10 305 -7 1634 172 22 50 chr11 132615158 132615333 -18168220 + AluJb SINE Alu 148 311 -1 420 271 75 86 chr11 132615344 132615614 -18167939 + L1ME3A LINE L1 1446 1708 -4832 5457 154 47 12 chr11 132615615 132616085 -18167468 - L1MC1 LINE L1 -1 6332 5880 1805 143 44 0 chr11 132616085 132616358 -18167195 - AluSq SINE Alu -12 301 17 5457 154 47 12 chr11 132616358 132617017 -18166536 - L1MC1 LINE L1 -453 5880 5166 543 162 38 9 chr11 132617017 132617122 -18166431 - FLAM_A SINE Alu -8 134 27 2068 125 32 0 chr11 132617168 132617447 -18166106 - AluSx SINE Alu -24 288 1 2855 219 49 14 chr11 132617448 132618264 -18165289 - L1MC1 LINE L1 -979 5167 4323 291 261 0 0 chr11 132618408 132618473 -18165080 + MER52A LTR ERV1 1 65 -1690 7875 203 56 6 chr11 132618946 132620491 -18163062 + MER52A LTR ERV1 11 1755 0 813 193 27 0 chr11 132620589 132620739 -18162814 + FRAM SINE Alu 12 165 -11 2369 99 3 0 chr11 132620795 132621121 -18162432 + AluSp SINE Alu 1 313 0 395 304 84 48 chr11 132621237 132621951 -18161602 + L1ME3A LINE L1 3221 3960 -2580 299 169 0 0 chr11 132621958 132622017 -18161536 + L1MA10 LINE L1 6266 6324 -10 207 0 0 0 chr11 132622184 132622207 -18161346 + (T)n Simple_repeat Simple_repeat 1 23 0 2465 68 7 19 chr11 132622350 132622659 -18160894 - AluSq SINE Alu -8 305 1 874 249 71 38 chr11 132622745 132623110 -18160443 + L1ME3 LINE L1 5786 6162 0 739 287 29 84 chr11 132623126 132623201 -18160352 + L1ME3A LINE L1 4196 4274 -2266 795 264 28 5 chr11 132623201 132623417 -18160136 - MER58A DNA MER1_type 0 224 4 739 287 29 84 chr11 132623417 132623733 -18159820 + L1ME3A LINE L1 4274 4551 -1989 1866 159 0 24 chr11 132623733 132624023 -18159530 + AluJb SINE Alu 2 284 -28 739 287 29 84 chr11 132624023 132624177 -18159376 + L1ME3A LINE L1 4551 4712 -1828 707 194 0 15 chr11 132624234 132624368 -18159185 - FLAM_C SINE Alu 0 133 2 585 222 65 0 chr11 132624369 132624554 -18158999 - MER69 DNA AcHobo -6 2520 2324 1265 268 10 60 chr11 132624569 132624972 -18158581 - MER69 DNA AcHobo -2080 446 64 375 294 44 84 chr11 132624990 132625691 -18157862 + L1ME3A LINE L1 4781 5453 -1087 1900 156 6 19 chr11 132625698 132626013 -18157540 + AluJb SINE Alu 1 311 -1 339 324 85 31 chr11 132626202 132626249 -18157304 + L1ME3A LINE L1 5566 5609 -949 2123 106 0 40 chr11 132626249 132626550 -18157003 - AluSx SINE Alu -23 289 1 339 324 85 31 chr11 132626550 132626770 -18156783 + L1ME3A LINE L1 5609 5844 -714 1024 77 23 0 chr11 132626771 132626901 -18156652 + AluSp SINE Alu 1 133 -180 301 341 49 30 chr11 132626907 132627071 -18156482 + L1ME3A LINE L1 5831 5997 -2205 678 82 0 0 chr11 132627071 132627168 -18156385 + AluSg/x SINE Alu 204 300 -9 284 282 63 16 chr11 132627288 132627490 -18156063 + L1ME3A LINE L1 6130 6340 -224 1881 81 0 0 chr11 132628156 132628378 -18155175 + AluSq SINE Alu 1 222 -91 263 311 90 41 chr11 132628494 132628616 -18154937 + MIR SINE MIR 25 152 -56 312 286 67 95 chr11 132629005 132629411 -18154142 - L2 LINE L2 -6 3307 2915 3987 118 5 37 chr11 132629411 132630066 -18153487 + MER51A LTR ERV1 1 634 0 312 286 67 95 chr11 132630066 132630283 -18153270 - L2 LINE L2 -398 2915 2693 898 235 93 64 chr11 132630291 132630478 -18153075 + L1MC5 LINE L1 7367 7547 -414 211 37 0 0 chr11 132630478 132630505 -18153048 + (TTTTG)n Simple_repeat Simple_repeat 2 80 0 2140 124 0 0 chr11 132630505 132630788 -18152765 - AluSx SINE Alu -29 283 1 898 235 93 64 chr11 132630788 132631113 -18152440 + L1MC5 LINE L1 7546 7895 -66 180 77 0 0 chr11 132631118 132631144 -18152409 + (A)n Simple_repeat Simple_repeat 1 26 0 305 263 9 53 chr11 132631460 132631516 -18152037 + MIR SINE MIR 118 168 -94 2236 125 22 8 chr11 132631516 132631875 -18151678 - THE1B LTR MaLR 0 364 1 305 263 9 53 chr11 132631875 132631932 -18151621 + MIR SINE MIR 168 226 -36 381 22 0 0 chr11 132632113 132632159 -18151394 + (CA)n Simple_repeat Simple_repeat 1 46 0 793 119 30 0 chr11 132633430 132633564 -18149989 + LTR49 LTR ERV1 26 163 -432 729 181 25 55 chr11 132633567 132633755 -18149798 + LTR29 LTR ERV1 413 608 0 356 220 0 9 chr11 132634172 132634281 -18149272 + CT-rich Low_complexity Low_complexity 1 108 0 189 0 0 0 chr11 132634283 132634304 -18149249 + (TCCCC)n Simple_repeat Simple_repeat 5 25 0 698 33 0 11 chr11 132634304 132634394 -18149159 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 1542 166 0 4 chr11 132634415 132634644 -18148909 - AluJo SINE Alu -84 228 1 17894 165 16 7 chr11 132634644 132638945 -18144608 + L1PA13 LINE L1 1832 6156 -7 268 132 6 49 chr11 132638945 132639031 -18144522 - LTR49 LTR ERV1 -554 41 1 * 349 235 35 0 chr11 132639031 132639080 -18144473 - MLT1C LTR MaLR -410 57 6 319 240 71 107 chr11 132639115 132639311 -18144242 + MIR SINE MIR 2 190 -72 1005 216 68 17 chr11 132639316 132639657 -18143896 + MSTD LTR MaLR 5 396 0 490 240 150 1 chr11 132639711 132639878 -18143675 + MIR SINE MIR 51 242 -20 360 0 0 0 chr11 132639981 132640021 -18143532 + (TG)n Simple_repeat Simple_repeat 1 40 0 2119 117 3 7 chr11 132640022 132640304 -18143249 - AluSx SINE Alu -30 282 2 379 291 89 0 chr11 132641040 132641198 -18142355 + MARNA DNA Mariner 145 316 -270 261 330 9 9 chr11 132641237 132641349 -18142204 - MARNA DNA Mariner -188 398 287 434 250 68 98 chr11 132641535 132641771 -18141782 + LTR16C LTR ERVL 263 491 0 1545 124 40 116 chr11 132641915 132641984 -18141569 - L1MB7 LINE L1 0 6184 6111 816 159 8 0 chr11 132641984 132642116 -18141437 + FLAM_C SINE Alu 1 133 0 1545 124 40 116 chr11 132642116 132642442 -18141111 - L1MB7 LINE L1 -73 6111 5819 1069 157 6 6 chr11 132642443 132642609 -18140944 - FRAM SINE Alu -12 164 1 26 30 0 0 chr11 132642609 132642642 -18140911 + AT_rich Low_complexity Low_complexity 1 33 0 907 110 0 0 chr11 132642642 132642760 -18140793 - FLAM_C SINE Alu -9 134 17 536 266 86 19 chr11 132642761 132643028 -18140525 - L1PB4 LINE L1 -330 5826 5542 1026 250 151 68 chr11 132643129 132643500 -18140053 - L1MC4a LINE L1 -1835 5973 5634 842 147 0 0 chr11 132643500 132643629 -18139924 + FLAM_C SINE Alu 5 133 0 1026 250 151 68 chr11 132643629 132643921 -18139632 - L1MC4a LINE L1 -2174 5634 5255 1012 257 38 52 chr11 132644026 132644372 -18139181 + MLT1I LTR MaLR 66 406 -3 2133 108 0 33 chr11 132644509 132644816 -18138737 + AluSq SINE Alu 2 298 -15 495 33 0 0 chr11 132644931 132644992 -18138561 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 424 326 43 0 chr11 132644999 132645183 -18138370 - L3 LINE CR1 -649 928 737 295 231 11 191 chr11 132645226 132645499 -18138054 + MIR SINE MIR 20 243 -19 268 277 101 40 chr11 132647184 132647332 -18136221 + L2 LINE L2 2606 2762 -552 552 232 89 37 chr11 132647362 132647552 -18136001 + L2 LINE L2 2867 3066 -247 282 339 77 56 chr11 132647688 132648441 -18135112 - L2 LINE L2 -1232 2082 1314 508 348 103 4 chr11 132648468 132648741 -18134812 + L3 LINE CR1 1273 1572 -5 584 179 9 9 chr11 132649154 132649266 -18134287 + AluSp/q SINE Alu 164 275 -38 856 254 56 65 chr11 132649575 132649913 -18133640 - MLT1J LTR MaLR -79 432 98 1373 160 5 5 chr11 132650543 132650762 -18132791 - AluJo SINE Alu -93 219 1 1415 87 34 0 chr11 132651428 132651635 -18131918 - MER34B LTR ERV1 0 565 352 709 128 0 0 chr11 132651638 132651747 -18131806 - AluSg/x SINE Alu -12 297 189 320 247 93 0 chr11 132652359 132652456 -18131097 - MIR SINE MIR -71 137 32 189 200 167 0 chr11 132652523 132652583 -18130970 + MIR SINE MIR 77 146 -116 332 299 90 51 chr11 132652972 132653149 -18130404 + MIR3 SINE MIR 21 204 -4 406 282 13 72 chr11 132653708 132653889 -18129664 + MIR SINE MIR 49 217 -45 188 276 118 26 chr11 132653967 132654043 -18129510 - MIR SINE MIR -78 184 102 897 156 54 0 chr11 132654148 132654315 -18129238 - MER34B LTR ERV1 -386 179 4 214 301 55 0 chr11 132654404 132654477 -18129076 - L2 LINE L2 -5 3308 3232 488 247 44 38 chr11 132654523 132654681 -18128872 + MIR SINE MIR 4 162 -100 1235 219 41 34 chr11 132654681 132655001 -18128552 - MLT1C LTR MaLR 0 467 146 2066 92 0 8 chr11 132655061 132655321 -18128232 - AluSq SINE Alu -45 268 11 673 149 92 7 chr11 132655335 132655476 -18128077 - MLT1C LTR MaLR -314 153 1 478 240 10 0 chr11 132655476 132655580 -18127973 + MIR SINE MIR 158 262 0 976 306 128 11 chr11 132655649 132656015 -18127538 - MLT1K LTR MaLR -121 467 59 288 203 0 58 chr11 132656081 132656150 -18127403 + L2 LINE L2 3208 3272 0 2093 140 13 0 chr11 132656193 132656501 -18127052 + AluSx SINE Alu 1 312 0 364 321 44 7 chr11 132656547 132656684 -18126869 - MIR SINE MIR -119 143 2 297 209 9 86 chr11 132656977 132657082 -18126471 - L1ME3 LINE L1 -290 5872 5776 668 104 191 0 chr11 132657082 132657197 -18126356 - FRAM SINE Alu -19 157 21 733 200 30 0 chr11 132657198 132657363 -18126190 - L1ME3 LINE L1 -375 5787 5618 308 254 127 9 chr11 132657798 132657908 -18125645 + L2 LINE L2 3191 3313 0 319 297 58 29 chr11 132658130 132658268 -18125285 - MIR SINE MIR -70 192 51 2157 117 21 0 chr11 132658648 132658939 -18124614 + AluSx SINE Alu 7 303 -9 223 284 126 0 chr11 132659511 132659606 -18123947 + MIR3 SINE MIR 58 164 -44 358 273 33 16 chr11 132660021 132660142 -18123411 - L2 LINE L2 -18 3295 3173 524 255 170 24 chr11 132660349 132660561 -18122992 - MIR SINE MIR -3 259 17 249 355 28 0 chr11 132660789 132660896 -18122657 + L3b LINE CR1 1326 1435 -148 2388 98 0 7 chr11 132662145 132662452 -18121101 + AluSc SINE Alu 1 305 -4 2161 119 0 7 chr11 132662452 132662745 -18120808 + AluSx SINE Alu 1 291 -21 2642 90 92 5 chr11 132662939 132663351 -18120202 - LTR7 LTR ERV1 -2 448 1 653 269 83 14 chr11 132663689 132663905 -18119648 + MIR SINE MIR 9 239 -23 233 321 107 0 chr11 132664001 132664085 -18119468 + MIR3 SINE MIR 114 206 -2 338 244 31 0 chr11 132664981 132665087 -18118466 - MIR SINE MIR -92 116 7 1077 251 139 55 chr11 132665587 132666136 -18117417 + L1ME3A LINE L1 5342 5942 -220 579 309 129 5 chr11 132666451 132666661 -18116892 + MIR SINE MIR 20 255 -7 262 263 58 89 chr11 132666919 132667109 -18116444 - MIR SINE MIR -50 212 29 311 311 58 0 chr11 132667284 132667387 -18116166 + MIR SINE MIR 114 222 -40 296 373 17 0 chr11 132667396 132667514 -18116039 + L2 LINE L2 3153 3272 0 348 253 100 53 chr11 132669235 132669405 -18114148 + MIR SINE MIR 16 193 -69 188 171 0 0 chr11 132669844 132669879 -18113674 + L2 LINE L2 3025 3059 -213 205 182 0 0 chr11 132669922 132669966 -18113587 + A-rich Low_complexity Low_complexity 5 48 0 802 72 10 0 chr11 132670480 132670577 -18112976 - FLAM_C SINE Alu -17 126 29 201 333 219 8 chr11 132671374 132671497 -18112056 + MIR3 SINE MIR 5 153 -55 582 15 0 0 chr11 132672295 132672362 -18111191 + (CAATT)n Simple_repeat Simple_repeat 5 71 0 1888 238 57 100 chr11 132672362 132673084 -18110469 - MER21B LTR ERV1 -160 703 13 206 300 233 38 chr11 132673110 132673397 -18110156 + L3 LINE CR1 1131 1473 -104 * 388 306 9 0 chr11 132673392 132673503 -18110050 + L2 LINE L2 3194 3305 -8 420 207 54 9 chr11 132673724 132673835 -18109718 + HAL1 LINE L1 4 119 -2388 410 234 56 0 chr11 132673851 132673958 -18109595 + HAL1 LINE L1 1 113 -2394 2636 145 10 77 chr11 132673963 132674384 -18109169 + MER41B LTR ERV1 100 318 -160 2457 86 0 0 chr11 132674384 132674688 -18108865 - AluSx SINE Alu -8 304 1 2636 145 10 77 chr11 132674688 132674828 -18108725 + MER41B LTR ERV1 318 466 -12 459 278 63 45 chr11 132674834 132675057 -18108496 + HAL1 LINE L1 115 341 -2166 2085 136 0 0 chr11 132675063 132675343 -18108210 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr11 132675343 132675364 -18108189 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 763 226 49 47 chr11 132675366 132675706 -18107847 - MSTC LTR MaLR -35 389 1 332 180 0 0 chr11 132675708 132675758 -18107795 + AluJo SINE Alu 1 50 -250 489 110 0 0 chr11 132675765 132675838 -18107715 + THE1C LTR MaLR 101 173 -202 1335 167 7 80 chr11 132675853 132675927 -18107626 + AluJo SINE Alu 49 127 -185 2382 109 0 0 chr11 132675927 132676230 -18107323 - AluSg SINE Alu -6 304 2 1335 167 7 80 chr11 132676230 132676430 -18107123 + AluJo SINE Alu 127 303 -9 453 235 81 34 chr11 132676430 132676579 -18106974 + HAL1 LINE L1 398 553 -1954 310 240 42 21 chr11 132676584 132676680 -18106873 - MER34 LTR ERV1 -5 537 440 378 203 0 27 chr11 132677011 132677085 -18106468 + HAL1 LINE L1 603 674 -1833 327 277 53 11 chr11 132677188 132677282 -18106271 - L3 LINE CR1 -64 1513 1416 1301 153 27 9 chr11 132677303 132677526 -18106027 - AluJo SINE Alu -1 311 85 778 291 56 26 chr11 132677559 132677865 -18105688 + MLT1L LTR MaLR 139 453 -162 472 293 213 48 chr11 132677985 132678221 -18105332 - L3 LINE CR1 -627 950 754 2349 82 0 26 chr11 132678221 132678525 -18105028 - AluSx SINE Alu -16 296 1 472 293 213 48 chr11 132678525 132678786 -18104767 - L3 LINE CR1 -823 754 371 2215 128 0 0 chr11 132679292 132679590 -18103963 - AluSx SINE Alu -14 298 1 320 204 26 15 chr11 132680945 132681039 -18102514 - MIR SINE MIR -88 120 25 582 282 50 25 chr11 132681868 132682070 -18101483 - MER3 DNA MER1_type -2 207 1 230 302 129 0 chr11 132682347 132682463 -18101090 + MIR3 SINE MIR 9 139 -69 261 217 50 0 chr11 132682678 132682738 -18100815 - MIR SINE MIR -60 148 86 440 331 34 0 chr11 132683193 132683368 -18100185 - MIR SINE MIR -13 249 69 215 261 0 15 chr11 132683624 132683689 -18099864 + G-rich Low_complexity Low_complexity 3 66 0 2812 152 76 11 chr11 132684181 132684722 -18098831 + LTR26E LTR ERV1 1 576 -46 1912 195 59 130 chr11 132684729 132685019 -18098534 + LTR8A LTR ERV1 1 310 -417 2094 105 3 29 chr11 132685019 132685325 -18098228 + AluSg SINE Alu 1 298 -12 1912 195 59 130 chr11 132685325 132685817 -18097736 + LTR8A LTR ERV1 310 727 0 235 209 0 0 chr11 132685820 132685863 -18097690 + LTR26B LTR ERV1 489 531 0 183 309 124 21 chr11 132685868 132685965 -18097588 + MIR SINE MIR 17 123 -85 742 156 6 23 chr11 132686095 132686268 -18097285 + CT-rich Low_complexity Low_complexity 2 171 0 980 141 21 0 chr11 132686406 132686597 -18096956 - LTR23 LTR ERV1 -10 427 233 1028 180 0 71 chr11 132686598 132686658 -18096895 + AluJo SINE Alu 90 153 -159 1739 184 0 3 chr11 132686658 132686952 -18096601 + AluSx SINE Alu 1 293 -19 1028 180 0 71 chr11 132686952 132687130 -18096423 + AluJo SINE Alu 153 311 -1 1038 162 48 26 chr11 132687131 132687360 -18096193 - LTR23 LTR ERV1 -203 234 1 1040 202 142 103 chr11 132687513 132688057 -18095496 - MER34B LTR ERV1 0 565 1 2272 77 0 3 chr11 132688229 132688516 -18095037 - AluSc SINE Alu -19 290 5 2193 115 0 0 chr11 132688979 132689274 -18094279 + AluSx SINE Alu 1 295 -17 1444 154 44 174 chr11 132692203 132692291 -18091262 + MSTD LTR MaLR 1 99 -297 1465 166 3 74 chr11 132692291 132692603 -18090950 + AluJo SINE Alu 10 300 -12 2137 142 0 0 chr11 132692603 132692913 -18090640 + AluSg SINE Alu 1 310 0 1465 166 3 74 chr11 132692913 132692926 -18090627 + AluJo SINE Alu 300 312 0 1444 154 44 174 chr11 132692926 132693290 -18090263 + MSTD LTR MaLR 99 394 -2 2262 102 3 6 chr11 132693568 132693881 -18089672 + AluSx SINE Alu 1 312 0 1274 111 0 0 chr11 132693881 132694062 -18089491 + AluSg/x SINE Alu 129 309 -1 248 297 168 0 chr11 132696213 132696314 -18087239 + L2 LINE L2 3147 3264 -8 616 129 0 0 chr11 132696408 132696493 -18087060 + AluS SINE Alu 7 91 -221 309 298 255 0 chr11 132696554 132696695 -18086858 - MIR3 SINE MIR -16 192 16 223 333 11 23 chr11 132697344 132697431 -18086122 - MIR3 SINE MIR -37 171 86 281 276 110 39 chr11 132697453 132697580 -18085973 + MIR SINE MIR 26 161 -101 408 244 35 26 chr11 132697870 132697985 -18085568 + MIR3 SINE MIR 70 185 -23 2279 98 10 0 chr11 132698645 132698950 -18084603 - AluSp SINE Alu -5 308 1 184 351 108 27 chr11 132698970 132699081 -18084472 + L3b LINE CR1 1413 1532 -51 444 380 58 0 chr11 132699505 132699779 -18083774 + ERVL LTR ERVL 3 292 -4704 870 294 23 13 chr11 132700138 132700448 -18083105 + ERVL LTR ERVL 742 1054 -3942 837 234 47 23 chr11 132700521 132700733 -18082820 + ERVL LTR ERVL 2201 2422 -2574 1666 176 118 12 chr11 132700733 132701063 -18082490 + MLT1A1 LTR MaLR 1 365 0 837 234 47 23 chr11 132701063 132701107 -18082446 + ERVL LTR ERVL 2422 2463 -2533 2144 137 0 6 chr11 132701267 132701581 -18081972 + AluSx SINE Alu 1 312 0 260 266 32 24 chr11 132701620 132701824 -18081729 + ERVL LTR ERVL 4799 5053 -711 934 299 71 2 chr11 132702223 132702618 -18080935 + LTR16B LTR ERVL 37 458 -6 461 293 88 19 chr11 132704352 132704434 -18079119 + MIR SINE MIR 17 92 -170 2167 187 20 18 chr11 132704434 132704829 -18078724 + MSTD LTR MaLR 1 396 0 461 293 88 19 chr11 132704829 132704961 -18078592 + MIR SINE MIR 92 246 -16 214 286 36 0 chr11 132706160 132706216 -18077337 + L2 LINE L2 3255 3312 -1 526 251 82 20 chr11 132706865 132707060 -18076493 - MER96B DNA MER1_type? -36 381 175 344 59 20 0 chr11 132708343 132708394 -18075159 + (CTCA)n Simple_repeat Simple_repeat 3 54 0 793 112 9 0 chr11 132708555 132708662 -18074891 - AluJb SINE Alu -204 108 1 291 310 0 0 chr11 132708662 132708733 -18074820 + L2 LINE L2 2686 2756 -558 468 286 187 18 chr11 132708812 132709045 -18074508 + L2 LINE L2 2871 3063 -209 2455 57 0 25 chr11 132709045 132709363 -18074190 - AluY SINE Alu -1 310 1 468 286 187 18 chr11 132709363 132709472 -18074081 + L2 LINE L2 3063 3271 -1 2127 130 20 29 chr11 132709965 132710312 -18073241 + MER2 DNA MER2_type 1 344 0 434 322 58 35 chr11 132710630 132710804 -18072749 - MIR SINE MIR -34 228 51 193 238 0 0 chr11 132711467 132711509 -18072044 + MIR SINE MIR 109 150 -112 218 292 15 15 chr11 132711844 132711909 -18071644 - L2 LINE L2 -2 3270 3206 260 254 0 0 chr11 132713644 132713707 -18069846 + MIR SINE MIR 200 262 0 334 317 62 8 chr11 132713869 132714040 -18069513 - MIR SINE MIR -45 217 26 445 282 129 24 chr11 132714117 132714287 -18069266 + MIR SINE MIR 69 256 -6 540 0 0 0 chr11 132714494 132714554 -18068999 + (TG)n Simple_repeat Simple_repeat 1 60 0 189 221 279 0 chr11 132715041 132715109 -18068444 + MIR SINE MIR 63 149 -113 2313 97 0 3 chr11 132715111 132715421 -18068132 + AluSx SINE Alu 1 309 -3 498 136 18 18 chr11 132715504 132715614 -18067939 + (TGG)n Simple_repeat Simple_repeat 2 111 0 439 349 129 0 chr11 132715751 132715960 -18067593 + L3 LINE CR1 1217 1452 -125 1695 188 10 10 chr11 132716021 132716330 -18067223 - AluJo SINE Alu -3 309 1 202 250 21 0 chr11 132716379 132716427 -18067126 - L2 LINE L2 -20 3293 3245 645 110 10 0 chr11 132716445 132716545 -18067008 + U6 snRNA snRNA 1 101 -6 440 191 55 158 chr11 132717407 132717468 -18066085 - MER5B DNA MER1_type -6 172 106 2120 128 0 3 chr11 132717468 132717766 -18065787 + AluSc SINE Alu 1 297 -12 440 191 55 158 chr11 132717766 132717777 -18065776 - MER5B DNA MER1_type -72 106 95 1584 133 110 4 chr11 132717777 132717873 -18065680 + AluJo SINE Alu 14 98 -214 360 0 0 0 chr11 132717873 132717913 -18065640 + (TAA)n Simple_repeat Simple_repeat 2 41 0 1584 133 110 4 chr11 132717913 132718080 -18065473 + AluJo SINE Alu 98 305 -7 440 191 55 158 chr11 132718080 132718189 -18065364 - MER5B DNA MER1_type -83 95 9 222 302 23 12 chr11 132718710 132718796 -18064757 + L2 LINE L2 2967 3053 -219 205 260 13 39 chr11 132719021 132719098 -18064455 + MIR3 SINE MIR 93 167 -41 241 320 26 0 chr11 132719135 132719213 -18064340 + L2 LINE L2 2954 3033 -239 223 294 0 0 chr11 132721962 132722013 -18061540 + (CGTG)n Simple_repeat Simple_repeat 1 51 0 186 43 0 0 chr11 132723155 132723178 -18060375 + (GGGGA)n Simple_repeat Simple_repeat 2 24 0 225 0 0 0 chr11 132725115 132725140 -18058413 + (TCC)n Simple_repeat Simple_repeat 2 26 0 338 220 50 40 chr11 132725806 132725906 -18057647 - MIR SINE MIR -82 180 80 185 358 54 14 chr11 132728629 132728777 -18054776 + L2 LINE L2 2886 3039 -233 539 101 0 13 chr11 132729042 132729121 -18054432 + Alu SINE Alu 220 297 -12 789 279 94 42 chr11 132729121 132729657 -18053896 + L2 LINE L2 2534 3154 -159 2303 81 3 3 chr11 132729657 132729954 -18053599 - AluSx SINE Alu -15 297 1 789 279 94 42 chr11 132729954 132730123 -18053430 + L2 LINE L2 3154 3313 0 2172 102 27 0 chr11 132730339 132730634 -18052919 - AluSx SINE Alu -9 303 1 403 227 35 48 chr11 132733199 132733362 -18050191 - MIR SINE MIR -62 146 18 283 306 81 24 chr11 132734084 132734208 -18049345 - MIR SINE MIR -2 260 130 204 313 170 9 chr11 132735243 132735355 -18048198 - MIR SINE MIR -63 145 16 351 246 8 103 chr11 132735388 132735421 -18048132 + MER5A DNA MER1_type 44 79 -110 2284 108 0 0 chr11 132735421 132735726 -18047827 + AluSg SINE Alu 1 305 -5 351 246 8 103 chr11 132735726 132735818 -18047735 + MER5A DNA MER1_type 79 157 -32 299 295 13 56 chr11 132737025 132737206 -18046347 + GA-rich Low_complexity Low_complexity 5 292 0 347 252 29 29 chr11 132738578 132738681 -18044872 - HAL1b LINE L1 -2 1346 1244 297 339 0 40 chr11 132738888 132739012 -18044541 + MIR SINE MIR 89 207 -55 197 382 91 9 chr11 132739436 132739546 -18044007 - L2 LINE L2 -3 3310 3192 743 274 155 14 chr11 132739555 132739851 -18043702 + L2 LINE L2 2923 3260 -12 237 312 161 0 chr11 132740354 132740447 -18043106 + L2 LINE L2 3202 3309 -4 373 335 25 6 chr11 132740677 132740835 -18042718 + MIR3 SINE MIR 37 197 -11 184 366 40 40 chr11 132742560 132742661 -18040892 - L3b LINE CR1 -163 1420 1320 24 53 0 0 chr11 132747725 132747763 -18035790 + GC_rich Low_complexity Low_complexity 1 38 0 21 89 0 0 chr11 132747889 132747945 -18035608 + GC_rich Low_complexity Low_complexity 1 56 0 25 65 0 0 chr11 132748036 132748082 -18035471 + GC_rich Low_complexity Low_complexity 1 46 0 219 233 14 27 chr11 132748509 132748582 -18034971 + G-rich Low_complexity Low_complexity 5 76 0 305 293 107 21 chr11 132748601 132748741 -18034812 - MIR3 SINE MIR -17 191 40 273 334 51 86 chr11 132749477 132749908 -18033645 - L2 LINE L2 -7 3265 2850 2135 99 0 0 chr11 132750171 132750514 -18033039 - AluSx SINE Alu 0 343 1 314 279 47 74 chr11 132750685 132750900 -18032653 - L2 LINE L2 -220 3052 2844 401 303 7 35 chr11 132751012 132751157 -18032396 + MIR SINE MIR 116 256 -6 272 293 0 0 chr11 132751218 132751276 -18032277 - L2 LINE L2 -5 3267 3210 279 0 0 0 chr11 132751985 132752016 -18031537 + (TG)n Simple_repeat Simple_repeat 1 31 0 229 334 113 45 chr11 132754718 132755053 -18028500 + L2 LINE L2 2517 2874 -440 750 256 50 16 chr11 132756450 132756692 -18026861 + MIR SINE MIR 13 262 0 702 197 96 5 chr11 132756823 132757011 -18026542 - MER20 DNA MER1_type -14 205 1 27 0 0 0 chr11 132758725 132758752 -18024801 + AT_rich Low_complexity Low_complexity 1 27 0 308 333 31 16 chr11 132760052 132760181 -18023372 + MIR SINE MIR 51 181 -81 183 42 0 0 chr11 132760819 132760843 -18022710 + (TG)n Simple_repeat Simple_repeat 1 24 0 703 278 117 0 chr11 132761020 132761243 -18022310 - MIR SINE MIR 0 262 14 248 303 97 71 chr11 132761574 132761729 -18021824 + MIR SINE MIR 33 191 -71 227 294 55 46 chr11 132762514 132762623 -18020930 - MIR3 SINE MIR -41 167 60 266 279 85 0 chr11 132763491 132763630 -18019923 - MIR SINE MIR -51 157 11 182 403 0 0 chr11 132763883 132763960 -18019593 + L2 LINE L2 3191 3267 -5 227 433 16 0 chr11 132764309 132764436 -18019117 - MIR SINE MIR -63 145 17 671 191 53 15 chr11 132764518 132764649 -18018904 - AluJb SINE Alu -176 136 1 438 319 88 19 chr11 132765945 132766157 -18017396 - MIR SINE MIR -7 255 19 347 370 17 42 chr11 132766694 132766932 -18016621 - L3b LINE CR1 -59 1524 1293 420 240 137 19 chr11 132766978 132767190 -18016363 + MIR SINE MIR 8 242 -20 290 341 75 28 chr11 132767816 132768030 -18015523 + L2 LINE L2 2752 2975 -339 322 96 37 162 chr11 132768365 132768501 -18015052 - L1MA4 LINE L1 0 6300 6182 264 77 0 0 chr11 132768864 132768903 -18014650 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 1787 148 38 3 chr11 132769160 132769451 -18014102 + L1MB7 LINE L1 5869 6169 -15 336 320 110 67 chr11 132771026 132771445 -18012108 - L2 LINE L2 -2 3270 2834 2315 101 0 0 chr11 132771769 132772065 -18011488 + AluSx SINE Alu 1 296 -16 210 354 0 0 chr11 132772119 132772184 -18011369 - L2 LINE L2 -3 3269 3205 348 203 14 0 chr11 132772496 132772565 -18010988 + MER20 DNA MER1_type 7 76 -143 188 346 0 0 chr11 132772928 132773006 -18010547 + L2 LINE L2 2982 3059 -213 263 213 0 0 chr11 132773549 132773596 -18009957 + L2 LINE L2 3261 3307 -6 390 281 117 18 chr11 132775725 132775896 -18007657 + L3 LINE CR1 1387 1574 -3 2285 106 0 0 chr11 132776011 132776314 -18007239 - AluSq SINE Alu -8 305 3 227 149 0 21 chr11 132777501 132777548 -18006005 + (CACG)n Simple_repeat Simple_repeat 3 48 0 1937 136 90 3 chr11 132779487 132779819 -18003734 - MER46B DNA MER2_type 0 236 1 1023 206 21 16 chr11 132780059 132780302 -18003251 + MIR SINE MIR 19 262 0 233 163 0 0 chr11 132780626 132780675 -18002878 - L2 LINE L2 -318 2954 2906 279 325 85 18 chr11 132782757 132782941 -18000612 + MIR SINE MIR 30 220 -42 355 250 50 62 chr11 132783523 132783631 -17999922 - MIR SINE MIR -31 231 124 2022 100 7 11 chr11 132783631 132783901 -17999652 + AluSc SINE Alu 36 304 -5 355 250 50 62 chr11 132783901 132783952 -17999601 - MIR SINE MIR -138 124 74 401 161 47 114 chr11 132784083 132784232 -17999321 - LTR37A LTR ERV1 -287 139 1 320 366 78 3 chr11 132785086 132785395 -17998158 + L2 LINE L2 2597 2928 -386 181 306 0 48 chr11 132785521 132785583 -17997970 + L2 LINE L2 3127 3185 -87 1896 202 50 11 chr11 132785590 132786026 -17997527 + MLT1C LTR MaLR 9 461 -6 1853 127 48 61 chr11 132786308 132786687 -17996866 - THE1C LTR MaLR -1 374 1 378 318 156 0 chr11 132786769 132786948 -17996605 + L3 LINE CR1 1182 1388 -189 195 276 98 73 chr11 132787170 132787293 -17996260 + L3 LINE CR1 1440 1565 -12 30 0 0 0 chr11 132787443 132787473 -17996080 + AT_rich Low_complexity Low_complexity 1 30 0 769 105 15 30 chr11 132787473 132787606 -17995947 - FLAM_C SINE Alu -2 131 1 241 193 0 0 chr11 132787895 132787952 -17995601 + L1M4 LINE L1 5254 5310 -836 1756 133 12 0 chr11 132787953 132788193 -17995360 + AluSx SINE Alu 1 243 -69 359 271 52 0 chr11 132788345 132788441 -17995112 + MER91A DNA MER1_type 1 101 -95 251 299 0 0 chr11 132788515 132788592 -17994961 + MER96B DNA MER1_type? 4 80 -337 1884 180 0 3 chr11 132788594 132788899 -17994654 + AluJo SINE Alu 1 304 -8 1798 115 36 97 chr11 132789031 132789361 -17994192 + AluSg SINE Alu 1 310 0 727 155 17 0 chr11 132789388 132789550 -17994003 + FLAM_A SINE Alu 1 164 0 224 308 39 0 chr11 132790098 132790176 -17993377 - L2 LINE L2 0 3313 3233 328 256 124 8 chr11 132790495 132790616 -17992937 + MIR SINE MIR 128 262 0 250 143 0 0 chr11 132791208 132791250 -17992303 - L2 LINE L2 -14 3258 3217 283 277 0 85 chr11 132791733 132791827 -17991726 + MER34 LTR ERV1 3 88 -454 523 258 75 55 chr11 132791845 132792279 -17991274 + LTR48B LTR ERV1 173 633 -11 1320 135 0 112 chr11 132792445 132792741 -17990812 - AluJo SINE Alu 0 312 50 1128 222 174 31 chr11 132794041 132794455 -17989098 + MER92B LTR ERV1 1 473 -163 180 0 0 0 chr11 132796237 132796257 -17987296 + (TAA)n Simple_repeat Simple_repeat 1 20 0 1933 168 3 19 chr11 132796257 132796573 -17986980 + AluSx SINE Alu 1 311 -1 320 172 179 67 chr11 132796606 132796740 -17986813 + MER92B LTR ERV1 488 636 0 233 286 152 18 chr11 132796952 132797064 -17986489 - MIR SINE MIR -14 248 122 214 333 0 0 chr11 132797223 132797289 -17986264 + MIR SINE MIR 197 262 0 604 237 40 0 chr11 132797472 132797624 -17985929 + L2 LINE L2 3156 3313 0 240 222 0 0 chr11 132797857 132797902 -17985651 - MIR SINE MIR -108 154 110 318 296 17 22 chr11 132799019 132799198 -17984355 + (CA)n Simple_repeat Simple_repeat 2 179 0 2314 99 0 3 chr11 132799598 132799891 -17983662 + AluSc SINE Alu 1 292 -17 340 254 232 11 chr11 132799959 132800144 -17983409 + MIR SINE MIR 2 227 -35 234 180 131 16 chr11 132800405 132800466 -17983087 + MIR SINE MIR 82 149 -113 723 250 67 72 chr11 132801416 132801705 -17981848 - HAL1 LINE L1 -17 2490 2202 405 0 0 0 chr11 132801705 132801750 -17981803 + (CA)n Simple_repeat Simple_repeat 1 45 0 723 250 67 72 chr11 132801750 132801820 -17981733 - HAL1 LINE L1 -305 2202 2133 823 184 174 46 chr11 132801826 132802133 -17981420 - HAL1 LINE L1 -1007 1500 1147 2120 100 31 67 chr11 132802133 132802175 -17981378 - THE1C LTR MaLR 0 375 333 2187 132 7 0 chr11 132802175 132802479 -17981074 + AluSx SINE Alu 1 306 -6 2120 100 31 67 chr11 132802479 132802825 -17980728 - THE1C LTR MaLR -42 333 1 823 184 174 46 chr11 132802825 132802844 -17980709 - HAL1 LINE L1 -1360 1147 1132 2404 131 88 11 chr11 132802844 132803278 -17980275 + MER39B LTR ERV1 1 467 -186 617 191 79 21 chr11 132803336 132803525 -17980028 - HAL1 LINE L1 -1371 1136 937 2165 127 3 16 chr11 132853568 132853884 -17929669 - AluSx SINE Alu 0 312 1 2202 55 0 0 chr11 132855038 132855295 -17928258 - AluY SINE Alu -54 257 1 362 272 78 13 chr11 132855454 132855745 -17927808 + Charlie7 DNA MER1_type 33 395 -2217 320 318 46 53 chr11 132855762 132855913 -17927640 + L1MEd LINE L1 23 172 -5947 518 363 136 11 chr11 132856180 132856549 -17927004 + L1M4 LINE L1 4732 5146 -1000 2286 113 0 0 chr11 132856680 132856971 -17926582 - AluSx SINE Alu -15 297 7 249 109 0 0 chr11 132857406 132857452 -17926101 + (GA)n Simple_repeat Simple_repeat 2 47 0 393 267 233 19 chr11 132857623 132857819 -17925734 + MIR SINE MIR 14 245 -17 341 279 115 0 chr11 132857891 132857995 -17925558 + MIR SINE MIR 73 188 -74 351 179 48 60 chr11 132859293 132859377 -17924176 + MIR SINE MIR 41 123 -85 308 221 301 22 chr11 132859897 132860033 -17923520 - MIR3 SINE MIR -14 194 21 382 307 145 22 chr11 132860699 132860927 -17922626 + MIR SINE MIR 7 262 0 214 116 20 76 chr11 132860942 132861009 -17922544 - MIR SINE MIR -58 150 107 183 162 0 0 chr11 132861404 132861441 -17922112 + (TG)n Simple_repeat Simple_repeat 1 37 0 223 215 65 97 chr11 132861481 132861574 -17921979 + MIR SINE MIR 10 99 -163 229 260 52 13 chr11 132861912 132861989 -17921564 + MIR SINE MIR 71 150 -112 202 333 12 0 chr11 132862083 132862167 -17921386 + MIR SINE MIR 164 248 -14 213 235 176 20 chr11 132862672 132862774 -17920779 + MIR SINE MIR 33 150 -58 548 259 129 36 chr11 132863817 132864095 -17919458 + LTR16A1 LTR ERVL 147 450 -7 355 262 65 0 chr11 132864103 132864210 -17919343 + MIR SINE MIR 79 192 -70 2396 170 60 14 chr11 132864248 132864731 -17918822 - MLT1D LTR MaLR 0 505 1 199 278 134 37 chr11 132865479 132865666 -17917887 + L2 LINE L2 3046 3250 -22 296 344 24 8 chr11 132865858 132865983 -17917570 + MIR SINE MIR 18 144 -64 858 152 111 6 chr11 132865998 132866169 -17917384 - MER5A DNA MER1_type 0 189 1 291 298 61 46 chr11 132866176 132866307 -17917246 - MER5A DNA MER1_type -21 168 36 254 264 95 81 chr11 132866178 132866326 -17917227 + MER5A DNA MER1_type 35 184 -5 * 584 278 7 8 chr11 132866375 132866569 -17916984 - L1MA10 LINE L1 0 6334 5988 274 280 0 80 chr11 132867040 132867140 -17916413 - L2 LINE L2 -10 3262 3171 327 179 0 0 chr11 132867577 132867644 -17915909 + (TG)n Simple_repeat Simple_repeat 1 67 0 280 256 70 93 chr11 132867670 132867799 -17915754 - L2 LINE L2 0 3313 3188 278 251 57 137 chr11 132868011 132868186 -17915367 + MER5A DNA MER1_type 1 161 -28 1813 216 68 19 chr11 132868217 132868749 -17914804 - L1ME3A LINE L1 -31 6139 5582 1852 229 51 31 chr11 132868749 132869303 -17914250 + MLT1F1 LTR MaLR 1 567 0 1064 123 19 13 chr11 132869316 132869470 -17914083 - AluJo SINE Alu -17 295 141 391 71 0 0 chr11 132869473 132869529 -17914024 - L1PA6 LINE L1 0 6154 6099 1425 29 0 0 chr11 132869529 132869703 -17913850 + L1P LINE L1 4922 5095 -1051 882 147 7 22 chr11 132869703 132869839 -17913714 - AluJo SINE Alu -178 134 1 976 247 45 10 chr11 132869842 132870206 -17913347 - L1ME3A LINE L1 -581 5581 5208 2289 238 56 58 chr11 132870262 132870415 -17913138 - L1MC4 LINE L1 -3 8039 7887 252 0 0 0 chr11 132870415 132870443 -17913110 + (CA)n Simple_repeat Simple_repeat 2 29 0 2289 238 56 58 chr11 132870443 132871206 -17912347 - L1MC4 LINE L1 -155 7887 7125 273 301 45 50 chr11 132871239 132871507 -17912046 - L1ME3A LINE L1 -969 5177 4904 328 321 140 14 chr11 132871645 132871866 -17911687 - L1MC4a LINE L1 -1785 6023 5775 333 310 45 9 chr11 132872060 132872191 -17911362 - MIR3 SINE MIR -88 120 15 198 132 0 26 chr11 132872329 132872367 -17911186 - L3 LINE CR1 -123 1454 1418 617 270 91 65 chr11 132873109 132873372 -17910181 + L1ME LINE L1 5330 5588 -533 517 289 116 58 chr11 132873372 132873530 -17910023 - L2 LINE L2 -32 3281 3134 1896 148 58 0 chr11 132873530 132873808 -17909745 + AluSx SINE Alu 1 294 -18 517 289 116 58 chr11 132873808 132873839 -17909714 - L2 LINE L2 -179 3134 3106 405 0 0 0 chr11 132873839 132873884 -17909669 + (CA)n Simple_repeat Simple_repeat 1 45 0 517 289 116 58 chr11 132873884 132874108 -17909445 - L2 LINE L2 -207 3106 2843 1574 86 14 5 chr11 132874210 132874430 -17909123 + HERVK LTR ERVK 7017 7238 -5 4995 151 20 5 chr11 132874433 132875232 -17908321 + LTR5 LTR ERVK 1 811 -158 199 326 101 0 chr11 132875886 132875975 -17907578 + MIR SINE MIR 41 138 -70 334 254 97 26 chr11 132876309 132876423 -17907130 - MER5A DNA MER1_type -28 161 40 2121 102 3 11 chr11 132876478 132876804 -17906749 + AluSx SINE Alu 1 324 0 832 266 18 22 chr11 132877602 132877824 -17905729 - MIR SINE MIR -28 234 14 353 310 56 56 chr11 132877948 132878180 -17905373 - L3b LINE CR1 -41 1542 1311 462 263 193 19 chr11 132878206 132878419 -17905134 + MIR SINE MIR 12 261 -1 2294 97 13 0 chr11 132878548 132878856 -17904697 + AluSx SINE Alu 1 312 0 2156 139 0 0 chr11 132879852 132880153 -17903400 + AluSg SINE Alu 1 301 -9 455 297 206 44 chr11 132880230 132881005 -17902548 - L2 LINE L2 0 3272 2382 223 171 204 34 chr11 132881297 132881385 -17902168 - L2 LINE L2 -10 3262 3160 2710 45 0 0 chr11 132881738 132882048 -17901505 - AluY SINE Alu -1 310 1 1280 209 67 6 chr11 132882562 132882878 -17900675 - L1MC1 LINE L1 0 6333 5999 2444 91 0 0 chr11 132883069 132883367 -17900186 - AluSg SINE Alu -12 298 1 232 286 24 24 chr11 132883880 132883964 -17899589 - MIR SINE MIR -55 207 124 21 36 0 0 chr11 132883988 132884016 -17899537 + AT_rich Low_complexity Low_complexity 1 28 0 385 282 53 64 chr11 132884432 132884620 -17898933 + MIR SINE MIR 39 224 -38 2248 114 3 0 chr11 132884645 132884944 -17898609 - AluSx SINE Alu -12 300 1 199 263 276 13 chr11 132885739 132885815 -17897738 - MER5A DNA MER1_type -43 146 51 570 271 79 0 chr11 132886426 132886603 -17896950 - MIR SINE MIR -52 210 20 186 43 0 0 chr11 132886824 132886847 -17896706 + (CAGGG)n Simple_repeat Simple_repeat 3 25 0 470 260 73 34 chr11 132887181 132887358 -17896195 + MIR SINE MIR 28 211 -51 805 251 5 36 chr11 132887554 132887749 -17895804 - AluJo SINE Alu -12 300 112 324 256 32 64 chr11 132888859 132888984 -17894569 + MIR SINE MIR 27 147 -115 669 205 106 19 chr11 132889609 132889770 -17893783 - MER5A DNA MER1_type -8 181 7 330 290 11 11 chr11 132889951 132890044 -17893509 + MER5A DNA MER1_type 97 189 0 245 315 46 46 chr11 132890956 132890978 -17892575 - MIR SINE MIR -63 145 124 1853 150 6 48 chr11 132890978 132891291 -17892262 + AluJb SINE Alu 1 300 -12 245 315 46 46 chr11 132891291 132891398 -17892155 - MIR SINE MIR -83 125 16 253 219 73 0 chr11 132891522 132891604 -17891949 + LTR16A1 LTR ERVL 60 147 -310 606 238 103 40 chr11 132891782 132892034 -17891519 + LTR16A LTR ERVL 177 444 -6 243 301 199 20 chr11 132892105 132892251 -17891302 - MIR SINE MIR -70 192 21 2523 65 0 7 chr11 132893324 132893632 -17889921 - AluY SINE Alu -5 306 1 336 276 167 40 chr11 132894200 132894374 -17889179 + L2 LINE L2 3066 3261 -11 254 271 76 76 chr11 132894723 132894867 -17888686 - MIR3 SINE MIR -17 191 48 494 294 17 76 chr11 132895013 132895222 -17888331 - MIR SINE MIR -58 150 4 281 197 14 0 chr11 132896246 132896317 -17887236 + CT-rich Low_complexity Low_complexity 4 75 0 345 207 128 85 chr11 132896324 132896488 -17887065 - L2 LINE L2 -39 3274 3104 825 166 131 17 chr11 132896526 132896701 -17886852 + MER1B DNA MER1_type 134 328 -11 364 321 42 64 chr11 132896727 132897038 -17886515 + L2 LINE L2 2966 3269 -3 3182 175 52 10 chr11 132897665 132898283 -17885270 + LTR48B LTR ERV1 1 644 0 204 333 13 0 chr11 132900116 132900191 -17883362 + MIR SINE MIR 73 148 -114 189 74 0 0 chr11 132900465 132900492 -17883061 + (GGGGA)n Simple_repeat Simple_repeat 1 27 0 1296 106 0 0 chr11 132901684 132901845 -17881708 - AluSq SINE Alu -152 161 1 354 232 103 129 chr11 132902118 132902381 -17881172 - L2 LINE L2 -13 3259 3004 402 340 31 13 chr11 132902484 132902643 -17880910 - L2 LINE L2 -2 3270 3109 262 218 11 40 chr11 132903150 132903324 -17880229 + CT-rich Low_complexity Low_complexity 3 171 0 186 315 18 63 chr11 132904783 132904894 -17878659 + MIR SINE MIR 34 139 -69 2043 93 72 7 chr11 132905792 132906070 -17877483 + AluSp SINE Alu 1 296 -17 251 356 0 11 chr11 132906139 132906226 -17877327 + MIR SINE MIR 45 130 -78 182 246 88 0 chr11 132906339 132906396 -17877157 - MIR SINE MIR -131 131 70 395 312 36 14 chr11 132907627 132907765 -17875788 - MIR SINE MIR -99 163 23 251 222 19 0 chr11 132907790 132907844 -17875709 + (TG)n Simple_repeat Simple_repeat 1 55 0 960 91 5 38 chr11 132907900 132907914 -17875639 + (TTCC)n Simple_repeat Simple_repeat 1 193 0 960 91 5 38 chr11 132907914 132908100 -17875453 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 332 339 80 36 chr11 132908339 132908531 -17875022 + MIR SINE MIR 6 206 -56 208 273 0 18 chr11 132909701 132909756 -17873797 - L3 LINE CR1 -20 1557 1504 207 100 0 0 chr11 132909820 132909850 -17873703 + (TCCA)n Simple_repeat Simple_repeat 3 32 0 798 246 81 52 chr11 132911300 132911645 -17871908 - L1MC4a LINE L1 -1873 5935 5581 183 348 65 22 chr11 132912162 132912254 -17871299 + MIR3 SINE MIR 2 97 -111 228 286 57 100 chr11 132912957 132913097 -17870456 + MIR3 SINE MIR 35 168 -40 482 282 160 11 chr11 132913811 132913999 -17869554 + MIR SINE MIR 39 254 -8 249 206 44 59 chr11 132914008 132914076 -17869477 - MIR SINE MIR -149 113 47 855 136 8 0 chr11 132914386 132914511 -17869042 - FLAM_A SINE Alu -7 126 1 228 100 0 0 chr11 132914516 132914556 -17868997 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 897 135 8 8 chr11 132914560 132914693 -17868860 - AluJb SINE Alu -179 133 1 227 345 50 36 chr11 132914695 132914834 -17868719 - MIR3 SINE MIR -59 149 9 823 219 30 0 chr11 132915299 132915468 -17868085 - MIR SINE MIR -78 184 11 245 331 58 36 chr11 132916163 132916302 -17867251 + MIR SINE MIR 53 194 -68 301 283 50 0 chr11 132916310 132916409 -17867144 - L2 LINE L2 -7 3306 3203 241 317 83 29 chr11 132917161 132917401 -17866152 - L2 LINE L2 -473 2841 2589 213 303 77 39 chr11 132918651 132918806 -17864747 - MIR SINE MIR -74 188 28 328 207 58 11 chr11 132919155 132919242 -17864311 + MIR SINE MIR 74 164 -98 2877 264 57 65 chr11 132919317 132919821 -17863732 + L1ME LINE L1 55 562 -5518 4404 69 2 0 chr11 132919821 132920385 -17863168 + L1PA14 LINE L1 5597 6161 0 2877 264 57 65 chr11 132920385 132921761 -17861792 + L1ME LINE L1 562 1948 -4132 2398 97 0 7 chr11 132921761 132922070 -17861483 - AluSg1 SINE Alu -2 307 1 2877 264 57 65 chr11 132922070 132922364 -17861189 + L1ME LINE L1 1948 2243 -3837 2044 138 14 89 chr11 132922364 132922723 -17860830 + MLT2C1 LTR ERVL 1 325 -72 411 21 0 0 chr11 132922723 132922771 -17860782 + (CA)n Simple_repeat Simple_repeat 2 49 0 2044 138 14 89 chr11 132922771 132922837 -17860716 + MLT2C1 LTR ERVL 325 394 -3 2877 264 57 65 chr11 132922837 132923414 -17860139 + L1ME LINE L1 2243 2777 -3303 287 144 125 29 chr11 132923421 132923525 -17860028 - L1M4 LINE L1 -3177 2969 2856 * 3908 245 72 12 chr11 132923521 132924871 -17858682 + L1M4 LINE L1 3752 5182 -964 1319 243 56 20 chr11 132924864 132925308 -17858245 + L1MEc LINE L1 32 491 -5905 * 858 144 0 7 chr11 132925313 132925452 -17858101 - L1PB3 LINE L1 -52 6102 5965 237 143 0 0 chr11 132925440 132925489 -17858064 + L1PB3 LINE L1 6104 6152 -2 * 3569 241 61 58 chr11 132925496 132926497 -17857056 + L1MEc LINE L1 485 1482 -4733 226 190 69 0 chr11 132926497 132926555 -17856998 + Alu SINE Alu 240 301 -1 3569 241 61 58 chr11 132926555 132927063 -17856490 + L1MEc LINE L1 1482 1987 -4228 1711 199 30 0 chr11 132927063 132927394 -17856159 + MER58B DNA MER1_type 1 341 0 3569 241 61 58 chr11 132927394 132928413 -17855140 + L1MEc LINE L1 1987 3014 -3201 420 221 0 21 chr11 132928427 132928522 -17855031 + THE1C LTR MaLR 200 292 -83 1333 257 37 42 chr11 132928971 132929217 -17854336 + L1MEc LINE L1 3031 3277 -2938 1879 169 184 63 chr11 132929217 132929680 -17853873 - LTR53 LTR ERVL 0 519 1 1333 257 37 42 chr11 132929680 132930028 -17853525 + L1MEc LINE L1 3277 3622 -2593 1287 225 71 23 chr11 132930032 132930427 -17853126 + MER63B DNA MER1_type 5 418 -18 491 202 0 9 chr11 132930506 132930620 -17852933 + L1MEc LINE L1 3803 3915 -2300 3555 121 3 28 chr11 132930650 132931219 -17852334 - L1PB2 LINE L1 0 6151 5597 1783 134 40 16 chr11 132931236 132931557 -17851996 + L1MB2 LINE L1 5841 6169 -2 2434 152 71 18 chr11 132931591 132932039 -17851514 + MLT1D LTR MaLR 31 502 -3 4803 213 32 48 chr11 132932041 132932517 -17851036 + L1MEc LINE L1 3929 4411 -1824 1570 206 0 29 chr11 132932517 132932828 -17850725 - AluJo SINE Alu -10 302 1 4803 213 32 48 chr11 132932828 132933677 -17849876 + L1MEc LINE L1 4411 5221 -1014 2210 113 0 31 chr11 132933677 132933995 -17849558 - AluSx SINE Alu -4 308 1 4803 213 32 48 chr11 132933995 132934417 -17849136 + L1MEc LINE L1 5221 5648 -587 * 12081 91 1 1 chr11 132934404 132936164 -17847389 + L1P LINE L1 1710 3469 -2677 255 154 0 11 chr11 132936164 132936218 -17847335 - Alu SINE Alu -260 40 1 596 224 26 0 chr11 132936228 132936380 -17847173 + L1ME2 LINE L1 5175 5330 -816 977 164 38 0 chr11 132936384 132936543 -17847010 - AluJb SINE Alu -14 298 134 2487 240 36 9 chr11 132936547 132937348 -17846205 + L1ME2 LINE L1 5317 6164 -6 288 252 30 23 chr11 132937373 132937504 -17846049 + L1MC5 LINE L1 7794 7925 -36 299 356 72 60 chr11 132938332 132938582 -17844971 - L2 LINE L2 -8 3264 3012 796 280 23 19 chr11 132939382 132939643 -17843910 + MIR SINE MIR 1 262 0 369 285 124 11 chr11 132939826 132940046 -17843507 + MIR3 SINE MIR 8 214 -48 678 274 54 42 chr11 132940682 132940923 -17842630 - L3b LINE CR1 -215 1368 1125 247 174 0 0 chr11 132940930 132940976 -17842577 - MIR3 SINE MIR -1 207 162 549 306 59 14 chr11 132941125 132941344 -17842209 - MIR SINE MIR 0 262 34 1837 183 94 24 chr11 132941432 132941803 -17841750 - MLT2C1 LTR ERVL 0 397 1 1730 204 30 33 chr11 132942070 132942530 -17841023 - LTR2B LTR ERV1 0 490 32 305 357 148 5 chr11 132942682 132942892 -17840661 - L3b LINE CR1 -24 1559 1320 1917 118 20 13 chr11 132943034 132943340 -17840213 + AluSx SINE Alu 5 312 0 443 368 58 31 chr11 132943462 132943685 -17839868 + L3b LINE CR1 1348 1576 -7 218 403 142 0 chr11 132944047 132944223 -17839330 + L3b LINE CR1 1277 1477 -106 384 261 49 42 chr11 132944917 132945059 -17838494 + L2 LINE L2 3171 3313 0 524 234 205 0 chr11 132945305 132945476 -17838077 - MER63A DNA MER1_type 0 210 5 258 286 36 12 chr11 132945513 132945597 -17837956 + CT-rich Low_complexity Low_complexity 4 89 0 220 324 28 0 chr11 132945601 132945672 -17837881 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 457 176 11 58 chr11 132945693 132945881 -17837672 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 394 259 167 35 chr11 132947219 132947393 -17836160 + MIR SINE MIR 50 246 -16 335 103 0 17 chr11 132947840 132947898 -17835655 + (TCC)n Simple_repeat Simple_repeat 2 58 0 225 397 8 8 chr11 132949045 132949166 -17834387 - MIR SINE MIR -65 143 23 351 113 0 0 chr11 132949187 132949240 -17834313 + (TTC)n Simple_repeat Simple_repeat 2 54 0 1363 128 47 0 chr11 132949637 132949871 -17833682 + Tigger5 DNA MER2_type 2079 2323 0 307 340 58 53 chr11 132950530 132950718 -17832835 + MIR3 SINE MIR 5 193 -15 242 267 33 0 chr11 132951176 132951236 -17832317 - MIR SINE MIR -59 149 88 257 275 38 0 chr11 132952660 132952740 -17830813 - MIR SINE MIR -124 138 56 276 296 51 20 chr11 132952806 132952904 -17830649 - MER5A DNA MER1_type 0 189 89 229 234 31 148 chr11 132952814 132952942 -17830611 + MER5B DNA MER1_type 63 175 -3 * 210 262 179 0 chr11 132952942 132952994 -17830559 - MIR3 SINE MIR -39 169 103 456 335 130 5 chr11 132953981 132954181 -17829372 + MIR SINE MIR 23 247 -15 347 359 32 6 chr11 132955337 132955493 -17828060 - MIR SINE MIR -6 256 97 240 35 0 0 chr11 132957143 132957172 -17826381 + (GGCTG)n Simple_repeat Simple_repeat 5 33 0 310 309 12 0 chr11 132957344 132957425 -17826128 + L2 LINE L2 3227 3308 -5 452 175 10 0 chr11 132958779 132958876 -17824677 + (TCCA)n Simple_repeat Simple_repeat 1 98 0 375 292 64 121 chr11 132959092 132959482 -17824071 - L2 LINE L2 0 3272 2905 1992 115 51 14 chr11 132959503 132959799 -17823754 + AluSx SINE Alu 1 307 -5 223 301 24 106 chr11 132959931 132960054 -17823499 - MIR3 SINE MIR 0 208 96 394 316 166 6 chr11 132961421 132961629 -17821924 - MIR SINE MIR -2 260 20 409 310 146 14 chr11 132962521 132962734 -17820819 + MIR SINE MIR 13 253 -9 434 260 16 0 chr11 132963189 132963312 -17820241 - MER94 DNA DNA -2 132 8 399 21 0 0 chr11 132963881 132963929 -17819624 + (CA)n Simple_repeat Simple_repeat 1 48 0 192 247 41 113 chr11 132964390 132964487 -17819066 + MIR3 SINE MIR 117 206 -2 248 321 24 0 chr11 132965155 132965239 -17818314 - MER94 DNA DNA -35 99 14 342 67 0 0 chr11 132965657 132965702 -17817851 + (TG)n Simple_repeat Simple_repeat 1 45 0 258 277 118 67 chr11 132966390 132966509 -17817044 + L2 LINE L2 3183 3307 -6 586 308 111 44 chr11 132966991 132967558 -17815995 - L2 LINE L2 0 3272 2682 232 161 0 12 chr11 132970894 132970948 -17812605 + MIR SINE MIR 93 145 -63 258 353 88 0 chr11 132971234 132971370 -17812183 + MIR3 SINE MIR 43 190 -18 367 310 92 23 chr11 132971913 132972087 -17811466 + MIR3 SINE MIR 12 197 -11 356 259 176 0 chr11 132972288 132972419 -17811134 + MIR3 SINE MIR 33 186 -22 868 293 4 39 chr11 132972994 132973250 -17810303 + MIR SINE MIR 12 258 -4 210 73 0 98 chr11 132975315 132975356 -17808197 - L2 LINE L2 -209 3063 3027 229 286 48 0 chr11 132975660 132975744 -17807809 + GA-rich Low_complexity Low_complexity 1 88 0 593 280 37 11 chr11 132976613 132976802 -17806751 + MIR3 SINE MIR 4 197 -11 228 225 225 12 chr11 132977066 132977146 -17806407 + L2 LINE L2 3146 3242 -30 326 326 0 0 chr11 132977300 132977392 -17806161 + MIR SINE MIR 33 124 -138 462 273 70 0 chr11 132979885 132980028 -17803525 + MIR SINE MIR 97 249 -13 368 343 200 7 chr11 132980712 132980992 -17802561 + L1MC4a LINE L1 5831 6164 -1644 253 304 33 0 chr11 132981227 132981319 -17802234 - L2 LINE L2 -212 3060 2966 225 94 0 0 chr11 132981971 132982003 -17801550 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 1550 149 100 6 chr11 132982232 132982561 -17800992 - L1MD1 LINE L1 0 6242 5883 2315 80 10 0 chr11 132982579 132982880 -17800673 - AluSc SINE Alu -5 304 1 360 278 10 10 chr11 132982880 132982977 -17800576 - MIR SINE MIR -71 191 95 485 319 0 32 chr11 132983904 132984061 -17799492 + L3 LINE CR1 1306 1457 -120 384 262 83 55 chr11 132984103 132984248 -17799305 + MIR SINE MIR 29 177 -85 4242 170 13 29 chr11 132984474 132985091 -17798462 + L1MB7 LINE L1 5254 5852 -332 1104 168 12 0 chr11 132985091 132985264 -17798289 + FAM SINE Alu 1 175 0 4242 170 13 29 chr11 132985264 132985583 -17797970 + L1MB7 LINE L1 5852 6175 -9 628 212 8 8 chr11 132985617 132985735 -17797818 + FLAM_A SINE Alu 7 124 -18 277 315 74 60 chr11 132986520 132986669 -17796884 - MIR SINE MIR -50 212 62 272 348 13 39 chr11 132988087 132988242 -17795311 - MIR SINE MIR 0 262 112 291 314 5 81 chr11 132988366 132988551 -17795002 + MIR SINE MIR 32 202 -60 203 364 20 10 chr11 132989270 132989369 -17794184 - MIR SINE MIR -79 129 30 248 280 0 23 chr11 132989731 132989829 -17793724 - MIR SINE MIR -63 145 62 242 263 66 0 chr11 132990727 132990803 -17792750 + MIR3 SINE MIR 90 170 -38 4144 184 50 26 chr11 132990847 132991259 -17792294 - MER63C DNA MER1_type -132 928 527 2335 112 3 0 chr11 132991259 132991564 -17791989 + AluSx SINE Alu 1 306 -6 4144 184 50 26 chr11 132991564 132991748 -17791805 - MER63C DNA MER1_type -533 527 349 2212 105 6 38 chr11 132991748 132992063 -17791490 - AluSq SINE Alu -8 305 1 4144 184 50 26 chr11 132992063 132992372 -17791181 - MER63C DNA MER1_type -711 349 1 454 279 16 8 chr11 132992699 132992828 -17790725 + L2 LINE L2 2569 2698 -616 889 177 0 70 chr11 132992828 132993014 -17790539 - FRAM SINE Alu 0 176 4 1050 255 154 43 chr11 132993019 132993047 -17790506 + L2 LINE L2 2687 2710 -603 2002 125 14 0 chr11 132993047 132993355 -17790198 + AluY SINE Alu 1 312 0 1050 255 154 43 chr11 132993355 132993886 -17789667 + L2 LINE L2 2710 3310 -3 1181 211 42 99 chr11 132994033 132994465 -17789088 - MLT2D LTR ERVL 0 414 8 201 263 75 38 chr11 132994658 132994738 -17788815 + MIR SINE MIR 117 199 -63 588 233 13 47 chr11 132995714 132995864 -17787689 - L2 LINE L2 0 3313 3169 773 290 19 14 chr11 132995882 132996089 -17787464 + MIR SINE MIR 35 242 -20 405 39 0 0 chr11 132997195 132997246 -17786307 + (CA)n Simple_repeat Simple_repeat 2 52 0 2154 108 3 7 chr11 132997246 132997533 -17786020 - AluSq SINE Alu -27 286 1 365 288 68 8 chr11 132997762 132997922 -17785631 + MIR SINE MIR 21 208 -54 21 0 0 0 chr11 132998547 132998568 -17784985 + AT_rich Low_complexity Low_complexity 1 21 0 906 285 125 11 chr11 133004462 133005048 -17778505 - L2 LINE L2 -1 3312 2669 210 276 116 97 chr11 133006934 133007202 -17776351 - L2 LINE L2 -2 3270 2998 2001 120 0 34 chr11 133007228 133007520 -17776033 + AluSx SINE Alu 1 282 -30 387 0 0 0 chr11 133007530 133007573 -17775980 + (TG)n Simple_repeat Simple_repeat 2 44 0 420 261 24 91 chr11 133007670 133007835 -17775718 + MIR SINE MIR 35 188 -74 866 231 75 114 chr11 133007902 133008491 -17775062 - L1MC4 LINE L1 -1 8041 7476 225 189 67 78 chr11 133008496 133008586 -17774967 - L1MC4 LINE L1 -880 7162 7074 339 85 0 0 chr11 133008591 133008638 -17774915 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 576 118 17 8 chr11 133008638 133008757 -17774796 + (TCTA)n Simple_repeat Simple_repeat 1 120 0 2806 245 80 57 chr11 133008765 133009541 -17774012 - L1MC4a LINE L1 -816 6992 6176 1424 155 6 149 chr11 133009541 133009889 -17773664 + AluSx SINE Alu 1 298 -14 2806 245 80 57 chr11 133009889 133010336 -17773217 - L1MC4a LINE L1 -1632 6176 5741 1789 146 10 32 chr11 133011458 133011766 -17771787 + AluJo SINE Alu 1 301 -11 915 203 96 37 chr11 133012262 133012533 -17771020 + L2 LINE L2 3026 3312 -1 2498 205 31 82 chr11 133013868 133014157 -17769396 + MER97a DNA MER1_type? 5 307 -587 1921 160 16 3 chr11 133014157 133014463 -17769090 - AluJb SINE Alu -2 310 1 2498 205 31 82 chr11 133014463 133014775 -17768778 + MER97a DNA MER1_type? 307 560 -334 2315 129 0 0 chr11 133014775 133015086 -17768467 - AluSx SINE Alu -1 311 1 2498 205 31 82 chr11 133015086 133015260 -17768293 + MER97a DNA MER1_type? 560 741 -153 493 228 6 48 chr11 133015277 133015444 -17768109 + MER97b DNA MER1_type? 700 859 -194 558 231 35 35 chr11 133015479 133015678 -17767875 + MER97c DNA MER1_type? 892 1090 0 1174 224 96 51 chr11 133015867 133016338 -17767215 - MLT1J LTR MaLR -6 505 1 180 0 0 0 chr11 133016517 133016537 -17767016 + (T)n Simple_repeat Simple_repeat 1 20 0 388 288 72 14 chr11 133016649 133016788 -17766765 - MER5A DNA MER1_type 0 189 43 320 315 47 13 chr11 133016668 133016817 -17766736 + MER5A DNA MER1_type 36 189 0 * 219 400 56 0 chr11 133018846 133018971 -17764582 + L3b LINE CR1 1338 1469 -114 399 252 43 17 chr11 133019067 133019208 -17764345 - MIR SINE MIR -63 145 23 401 181 14 0 chr11 133020364 133020436 -17763117 + MER21B LTR ERV1 43 115 -748 1275 259 78 40 chr11 133020436 133020935 -17762618 + MER21B LTR ERV1 235 752 -111 786 214 21 21 chr11 133020974 133021161 -17762392 - MLT1A2 LTR MaLR -187 187 1 241 272 11 33 chr11 133021437 133021529 -17762024 - MIR SINE MIR -77 131 42 248 326 70 0 chr11 133022263 133022349 -17761204 - L2 LINE L2 -38 3275 3184 1854 132 0 72 chr11 133024577 133024895 -17758658 - AluJb SINE Alu -17 295 1 399 268 134 0 chr11 133024955 133025097 -17758456 - MIR SINE MIR -55 207 47 2739 166 114 30 chr11 133025159 133025546 -17758007 + MER67C LTR ERV1 1 354 -356 605 289 117 39 chr11 133025546 133025957 -17757596 + MER65A LTR ERV1 1 443 -2 2739 166 114 30 chr11 133025957 133026224 -17757329 + MER67C LTR ERV1 354 710 0 332 341 100 27 chr11 133027749 133028010 -17755543 + L2 LINE L2 2992 3271 -1 297 254 15 0 chr11 133028046 133028113 -17755440 + MIR SINE MIR 84 151 -111 222 276 26 0 chr11 133028787 133028863 -17754690 - MIR3 SINE MIR -21 187 110 341 331 82 16 chr11 133029695 133029879 -17753674 + L2 LINE L2 2695 2890 -424 221 313 83 0 chr11 133029925 133030021 -17753532 + L2 LINE L2 2915 3018 -254 228 241 149 11 chr11 133031299 133031386 -17752167 + L2 LINE L2 2367 2465 -849 558 292 133 26 chr11 133031674 133032020 -17751533 + L2 LINE L2 1879 2261 -1053 386 178 122 9 chr11 133032030 133032137 -17751416 + Charlie7 DNA MER1_type 39 157 -2455 539 287 138 15 chr11 133032230 133032649 -17750904 + MLT1J LTR MaLR 1 495 -16 668 240 134 60 chr11 133033354 133033720 -17749833 + MLT1J1 LTR MaLR 52 444 -2 219 114 0 0 chr11 133033968 133034003 -17749550 + (TC)n Simple_repeat Simple_repeat 2 36 0 195 148 33 16 chr11 133034004 133034065 -17749488 + (TA)n Simple_repeat Simple_repeat 2 63 0 229 137 33 26 chr11 133034154 133034177 -17749376 - L1MC2 LINE L1 -1 6737 6716 2337 111 0 0 chr11 133034177 133034475 -17749078 + AluSx SINE Alu 1 298 -14 229 137 33 26 chr11 133034475 133035408 -17748145 - L1MC2 LINE L1 -22 6716 5690 1891 208 19 83 chr11 133035456 133036144 -17747409 - L1MC2 LINE L1 -822 5718 5075 576 245 46 0 chr11 133036146 133036342 -17747211 - L1MC2 LINE L1 -1578 4962 4758 3594 244 38 72 chr11 133036372 133036800 -17746753 - L1MC2 LINE L1 -2086 4454 4013 2456 109 0 0 chr11 133036800 133037112 -17746441 + AluSx SINE Alu 1 312 0 3594 244 38 72 chr11 133037112 133037824 -17745729 - L1MC2 LINE L1 -2527 4013 3278 1577 169 4 0 chr11 133037824 133038066 -17745487 + AluJb SINE Alu 1 243 -69 222 62 0 0 chr11 133038072 133038104 -17745449 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 3594 244 38 72 chr11 133038104 133038390 -17745163 - L1MC2 LINE L1 -3267 3273 3039 6187 185 100 41 chr11 133038393 133040284 -17743269 - L1MC2 LINE L1 -4285 2255 156 2689 146 17 9 chr11 133040300 133040719 -17742834 + MSTB LTR MaLR 1 422 -4 8631 180 22 4 chr11 133040723 133042331 -17741222 + MSTB-int LTR MaLR 2 1637 -14 2443 172 29 10 chr11 133042345 133042763 -17740790 + MSTB LTR MaLR 1 426 0 823 162 7 7 chr11 133042764 133042912 -17740641 - L1MC2 LINE L1 -6392 148 1 * 4999 160 22 11 chr11 133042905 133044279 -17739274 - L1MB8 LINE L1 -1 6177 4780 2095 145 35 46 chr11 133044368 133044762 -17738791 - MLT1B LTR MaLR 0 390 1 372 195 57 57 chr11 133046519 133046678 -17736875 + L1MC4 LINE L1 6950 7108 -934 650 300 58 18 chr11 133046684 133047143 -17736410 + L1MC4 LINE L1 6977 7458 -584 879 193 17 6 chr11 133047174 133047350 -17736203 - MLT1A2 LTR MaLR -4 370 193 405 0 0 0 chr11 133047354 133047399 -17736154 + (GA)n Simple_repeat Simple_repeat 2 46 0 2195 170 30 7 chr11 133047423 133047828 -17735725 - MSTB1 LTR MaLR -18 414 1 648 180 31 16 chr11 133047828 133047955 -17735598 - MLT1A2 LTR MaLR -244 130 2 1593 189 145 43 chr11 133047957 133048449 -17735104 - MLT1F1 LTR MaLR -19 548 1 1000 261 90 47 chr11 133048455 133049082 -17734471 + L1MC4 LINE L1 7292 8022 -20 247 323 108 8 chr11 133049362 133049514 -17734039 + MIR SINE MIR 10 172 -60 302 279 97 45 chr11 133050707 133050861 -17732692 - L2 LINE L2 -10 3262 3101 229 296 160 30 chr11 133051026 133051195 -17732358 + MIR3 SINE MIR 7 197 -11 2238 78 7 7 chr11 133051684 133051968 -17731585 - AluY SINE Alu -5 306 23 186 43 0 0 chr11 133052418 133052441 -17731112 + (GGGTG)n Simple_repeat Simple_repeat 4 26 0 180 250 28 69 chr11 133052798 133052870 -17730683 - L2 LINE L2 -89 3224 3156 828 193 47 6 chr11 133053950 133054121 -17729432 - MIR SINE MIR -35 227 50 23 0 0 0 chr11 133054378 133054401 -17729152 + AT_rich Low_complexity Low_complexity 1 23 0 2143 113 36 70 chr11 133055133 133055521 -17728032 + THE1C LTR MaLR 1 375 0 249 284 63 0 chr11 133056815 133056910 -17726643 + MER96 DNA MER1_type? 1 101 -74 562 254 85 15 chr11 133057211 133057412 -17726141 + MIR SINE MIR 1 215 -47 4164 164 121 60 chr11 133058317 133059636 -17723917 - pTR5 LTR ERV1 0 2438 742 691 255 4 75 chr11 133059745 133060023 -17723530 + LTR16A1 LTR ERVL 197 454 -3 1729 161 20 33 chr11 133060072 133060376 -17723177 - AluJo SINE Alu -12 300 1 787 278 140 32 chr11 133061008 133061515 -17722038 + MLT1K LTR MaLR 10 571 -17 580 77 13 0 chr11 133062614 133062692 -17720861 - MADE1 DNA Mariner -1 79 1 407 298 46 7 chr11 133062775 133062926 -17720627 + MIR SINE MIR 5 161 -101 230 297 143 24 chr11 133062948 133063157 -17720396 + MLT1K LTR MaLR 340 573 -15 359 332 45 58 chr11 133063199 133063422 -17720131 - L2 LINE L2 -88 3184 2965 368 305 29 0 chr11 133063440 133063545 -17720008 + L3 LINE CR1 1436 1543 -34 801 233 40 92 chr11 133063623 133063949 -17719604 + MER102b DNA MER1_type 31 339 -2 258 32 0 0 chr11 133064390 133064421 -17719132 + (TG)n Simple_repeat Simple_repeat 2 32 0 3030 194 31 58 chr11 133064566 133065396 -17718157 - L1ME1 LINE L1 -8 6158 5351 474 181 127 7 chr11 133066389 133066531 -17717022 + MIR SINE MIR 34 189 -61 189 250 57 57 chr11 133066578 133066666 -17716887 + MIR3 SINE MIR 114 201 -7 195 129 0 0 chr11 133067896 133067927 -17715626 + (CAA)n Simple_repeat Simple_repeat 3 33 0 634 281 28 46 chr11 133067957 133068174 -17715379 - MIR SINE MIR -34 228 16 440 290 0 0 chr11 133068278 133068385 -17715168 + MIR SINE MIR 156 262 0 195 282 91 27 chr11 133068413 133068523 -17715030 - L2 LINE L2 -38 3275 3159 271 222 0 0 chr11 133068732 133068777 -17714776 - L2 LINE L2 -32 3281 3237 203 263 0 0 chr11 133068790 133068847 -17714706 + L2 LINE L2 3257 3313 0 252 262 0 78 chr11 133069852 133069912 -17713641 + MIR SINE MIR 51 101 -161 996 169 30 82 chr11 133069912 133070143 -17713410 + MER20 DNA MER1_type 1 219 0 252 262 0 78 chr11 133070143 133070185 -17713368 + MIR SINE MIR 101 145 -117 857 277 66 11 chr11 133070294 133070565 -17712988 + L3b LINE CR1 1106 1391 -192 287 326 82 0 chr11 133072163 133072298 -17711255 + MIR SINE MIR 41 186 -76 498 244 113 19 chr11 133072365 133072525 -17711028 - MER96 DNA MER1_type 0 175 1 189 235 59 20 chr11 133073807 133073858 -17709695 - L3 LINE CR1 -10 1567 1515 381 338 42 19 chr11 133073983 133074199 -17709354 - L3 LINE CR1 -202 1375 1155 847 155 14 14 chr11 133074885 133075033 -17708520 - BC200 scRNA scRNA -43 157 10 309 359 42 55 chr11 133076523 133076832 -17706721 - L2 LINE L2 -2 3270 2966 467 210 10 10 chr11 133076855 133076955 -17706598 + MER34 LTR ERV1 6 105 -437 874 233 44 69 chr11 133076970 133077360 -17706193 + MER39 LTR ERV1 293 505 -37 2153 116 56 31 chr11 133077360 133077715 -17705838 - THE1B LTR MaLR 0 364 1 874 233 44 69 chr11 133077715 133077751 -17705802 + MER39 LTR ERV1 505 540 -2 313 281 186 35 chr11 133078751 133078859 -17704694 + L2 LINE L2 3005 3095 -218 2228 126 133 18 chr11 133078859 133079241 -17704312 + MSTB LTR MaLR 1 426 0 313 281 186 35 chr11 133079241 133079331 -17704222 + L2 LINE L2 3095 3233 -80 352 232 121 20 chr11 133079462 133079561 -17703992 + MIR SINE MIR 104 212 -50 375 274 62 9 chr11 133079692 133079805 -17703748 + MLT1K LTR MaLR 141 259 -329 1307 237 101 78 chr11 133080205 133080876 -17702677 + MER21B LTR ERV1 27 713 -150 1769 199 31 81 chr11 133080897 133081476 -17702077 + L1ME1 LINE L1 5613 6162 -4 434 330 84 43 chr11 133081531 133081877 -17701676 + L2 LINE L2 2316 2675 -639 920 124 0 8 chr11 133082051 133082180 -17701373 - FLAM_C SINE Alu -4 129 2 437 354 38 58 chr11 133082181 133082421 -17701132 + L2 LINE L2 3022 3256 -16 1559 217 65 25 chr11 133084753 133085150 -17698403 - LTR40a LTR ERVL 0 519 107 2907 169 14 26 chr11 133085155 133085723 -17697830 - MLT1A1-int LTR MaLR -1173 562 2 1847 168 6 55 chr11 133085727 133086091 -17697462 - MLT1A1 LTR MaLR -3 362 17 314 230 221 18 chr11 133086124 133086237 -17697316 + L2 LINE L2 3172 3307 -6 2338 113 3 0 chr11 133086268 133086577 -17696976 + AluSq SINE Alu 1 310 -3 2173 145 126 3 chr11 133086763 133087143 -17696410 + MSTA LTR MaLR 1 427 -1 362 321 43 31 chr11 133087323 133087485 -17696068 - MIR SINE MIR -51 211 48 311 269 48 36 chr11 133087648 133087792 -17695761 + MIR3 SINE MIR 43 188 -20 817 177 44 61 chr11 133088037 133088218 -17695335 - MER5B DNA MER1_type 0 178 1 510 130 0 13 chr11 133089602 133089679 -17693874 - AluS SINE Alu -16 296 221 208 196 87 0 chr11 133089679 133089725 -17693828 - L2 LINE L2 -18 3254 3205 481 283 35 25 chr11 133090357 133090557 -17692996 - MIR SINE MIR -19 243 42 310 308 39 0 chr11 133093717 133093821 -17689732 - L2 LINE L2 -29 3243 3136 473 274 0 18 chr11 133094861 133094974 -17688579 - L2 LINE L2 -2 3270 3160 407 256 73 29 chr11 133095181 133095318 -17688235 - MIR SINE MIR -6 256 114 206 206 318 40 chr11 133096407 133096533 -17687020 - MIR SINE MIR -50 212 52 3508 139 77 9 chr11 133096879 133097461 -17686092 + LTR26E LTR ERV1 1 622 0 258 287 99 10 chr11 133097675 133097776 -17685777 - MIR SINE MIR -106 156 47 248 305 212 0 chr11 133097903 133098021 -17685532 - MIR SINE MIR -104 158 16 1666 173 42 24 chr11 133098239 133098528 -17685025 - AluJo SINE Alu -18 294 1 2743 130 9 21 chr11 133098772 133099209 -17684344 + Tigger2a DNA MER2_type 1 432 -2 400 258 8 62 chr11 133100167 133100295 -17683258 - MER5B DNA MER1_type -20 158 38 219 143 29 14 chr11 133100447 133100517 -17683036 + GA-rich Low_complexity Low_complexity 1 71 0 480 344 9 28 chr11 133100551 133100766 -17682787 + MIR SINE MIR 46 256 -6 403 153 68 93 chr11 133102981 133103099 -17680454 - MIR SINE MIR -105 157 43 224 345 45 18 chr11 133103999 133104109 -17679444 - L3b LINE CR1 -94 1489 1377 212 360 24 48 chr11 133104239 133104364 -17679189 - MIR3 SINE MIR -79 129 8 275 297 29 4 chr11 133105318 133105481 -17678072 + MIR SINE MIR 29 250 -12 * 284 284 61 43 chr11 133105466 133105688 -17677865 - MIR SINE MIR -21 241 18 420 277 85 0 chr11 133106061 133106155 -17677398 + L2 LINE L2 3150 3251 -21 180 111 0 0 chr11 133106173 133106200 -17677353 + (TGAG)n Simple_repeat Simple_repeat 1 27 0 237 325 53 13 chr11 133107174 133107285 -17676268 + MIR SINE MIR 41 152 -62 217 304 123 65 chr11 133107769 133108223 -17675330 + L2 LINE L2 2571 3054 -259 1517 179 135 6 chr11 133108397 133108715 -17674838 + MLT1A1 LTR MaLR 7 365 0 874 245 34 60 chr11 133108841 133109110 -17674443 - MIR SINE MIR 0 262 1 385 267 54 7 chr11 133110050 133110195 -17673358 - MER5A DNA MER1_type -12 166 23 366 289 126 0 chr11 133110202 133110337 -17673216 + MIR SINE MIR 63 214 -48 1921 153 0 43 chr11 133111568 133111894 -17671659 - AluJb SINE Alu 0 312 1 1933 165 73 28 chr11 133111963 133112032 -17671521 + L1PB4 LINE L1 5712 5776 -380 429 20 0 0 chr11 133112032 133112082 -17671471 + (TG)n Simple_repeat Simple_repeat 2 51 0 1933 165 73 28 chr11 133112082 133112437 -17671116 + L1PB4 LINE L1 5776 6155 -1 295 296 88 44 chr11 133112898 133112960 -17670593 - MIR SINE MIR -50 212 154 1830 195 5 29 chr11 133112960 133113334 -17670219 - MLT1A1 LTR MaLR 0 365 1 295 296 88 44 chr11 133113334 133113430 -17670123 - MIR SINE MIR -108 154 47 302 149 32 106 chr11 133113508 133113602 -17669951 - MIR SINE MIR -50 212 126 266 295 166 22 chr11 133114914 133115053 -17668500 - MIR SINE MIR -18 244 86 2315 98 0 3 chr11 133115085 133115391 -17668162 + AluSq SINE Alu 1 305 -8 234 239 15 15 chr11 133115392 133115459 -17668094 - LTR67 LTR ERVL -40 517 451 904 82 47 0 chr11 133116148 133116318 -17667235 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 30 27 0 0 chr11 133116369 133116406 -17667147 + AT_rich Low_complexity Low_complexity 1 37 0 1220 231 46 173 chr11 133116407 133117397 -17666156 + L2 LINE L2 2263 3093 -220 2264 140 119 8 chr11 133117397 133117782 -17665771 - MSTA LTR MaLR 0 428 1 1220 231 46 173 chr11 133117782 133117979 -17665574 + L2 LINE L2 3093 3313 0 516 150 0 0 chr11 133118136 133118216 -17665337 + MADE1 DNA Mariner 1 80 0 307 301 19 19 chr11 133119025 133119128 -17664425 + MIR SINE MIR 43 145 -63 211 345 69 0 chr11 133120081 133120168 -17663385 - MIR SINE MIR -123 139 47 418 242 52 72 chr11 133120997 133121150 -17662403 + MIR SINE MIR 61 210 -52 306 115 0 0 chr11 133121189 133121241 -17662312 + (TG)n Simple_repeat Simple_repeat 2 53 0 448 290 19 45 chr11 133121547 133121702 -17661851 - MIR SINE MIR -74 188 38 241 178 22 0 chr11 133121857 133121902 -17661651 + L2 LINE L2 3191 3236 -36 508 268 196 12 chr11 133121961 133122282 -17661271 + L1ME4a LINE L1 5731 6110 -11 683 336 45 14 chr11 133122473 133122765 -17660788 + L3 LINE CR1 295 595 -982 451 184 11 0 chr11 133122807 133122894 -17660659 - MER117 DNA MER1_type -60 137 50 877 332 64 30 chr11 133122936 133123376 -17660177 + L3 LINE CR1 575 1029 -548 198 0 0 0 chr11 133123442 133123464 -17660089 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 228 365 19 0 chr11 133123741 133123848 -17659705 + L2 LINE L2 2708 2816 -498 643 263 70 32 chr11 133123879 133124164 -17659389 - HAL1 LINE L1 -26 2481 2186 859 278 86 43 chr11 133124340 133124877 -17658676 - HAL1 LINE L1 -544 1963 1404 483 249 81 87 chr11 133124908 133125414 -17658139 - HAL1 LINE L1 -1304 1203 701 33 25 0 0 chr11 133125788 133125828 -17657725 + AT_rich Low_complexity Low_complexity 1 40 0 1451 89 110 8 chr11 133125956 133126193 -17657360 - L1PA13 LINE L1 0 6163 5903 369 264 112 74 chr11 133126250 133126508 -17657045 - L1MC4a LINE L1 -1748 6043 5776 470 335 87 9 chr11 133126510 133126972 -17656581 - L1MC4a LINE L1 -397 5748 5251 461 178 271 8 chr11 133126975 133127093 -17656460 + MER5A DNA MER1_type 41 189 0 1304 306 69 20 chr11 133127205 133127574 -17655979 - L1MC4a LINE L1 -2636 3493 3144 1707 194 17 0 chr11 133127574 133127868 -17655685 - AluJo SINE Alu -13 299 1 1304 306 69 20 chr11 133127868 133128515 -17655038 - L1MC4a LINE L1 -2985 3144 2427 2525 154 0 28 chr11 133128523 133128959 -17654594 + Tigger2a DNA MER2_type 11 434 0 842 119 13 53 chr11 133129112 133129263 -17654290 - AluSg/x SINE Alu 0 312 168 496 304 76 55 chr11 133129297 133129407 -17654146 - L1MEd LINE L1 -3948 2218 2112 1615 200 144 72 chr11 133129407 133129962 -17653591 - MLT1G1 LTR MaLR 0 595 1 496 304 76 55 chr11 133129962 133130232 -17653321 - L1MEd LINE L1 -4054 2112 1793 180 0 0 0 chr11 133130258 133130278 -17653275 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2114 141 3 3 chr11 133130342 133130640 -17652913 - AluSx SINE Alu -14 298 1 1497 288 82 55 chr11 133130717 133130792 -17652761 - L1MEd LINE L1 -4680 1572 1500 1881 123 0 63 chr11 133130792 133131112 -17652441 + AluSx SINE Alu 1 301 0 1497 288 82 55 chr11 133131112 133131612 -17651941 - L1MEd LINE L1 -4752 1500 1015 1232 193 8 21 chr11 133131612 133131851 -17651702 + MER8 DNA MER2_type 2 237 -2 1497 288 82 55 chr11 133131851 133132790 -17650763 - L1MEd LINE L1 -5237 1015 1 487 274 25 66 chr11 133132998 133133195 -17650358 - HAL1 LINE L1 -2318 189 1 24 0 0 0 chr11 133133357 133133381 -17650172 + AT_rich Low_complexity Low_complexity 1 24 0 2508 66 0 3 chr11 133133437 133133741 -17649812 - AluY SINE Alu -8 303 1 361 259 177 32 chr11 133135435 133135656 -17647897 - MLT1H LTR MaLR -196 359 108 435 163 1 3 chr11 133135849 133135925 -17647628 - MLT1H LTR MaLR -398 151 34 293 279 28 14 chr11 133135992 133136115 -17647438 + MIR SINE MIR 16 140 -107 21 36 0 0 chr11 133136289 133136317 -17647236 + AT_rich Low_complexity Low_complexity 1 28 0 631 297 43 11 chr11 133136411 133136596 -17646957 + MER91A DNA MER1_type 3 193 -3 375 287 43 53 chr11 133137834 133138043 -17645510 + L2 LINE L2 2551 2757 -557 185 361 16 0 chr11 133138157 133138218 -17645335 + MIR SINE MIR 31 92 -170 189 147 0 0 chr11 133138286 133138320 -17645233 + (TAA)n Simple_repeat Simple_repeat 1 34 0 461 265 133 0 chr11 133138348 133138499 -17645054 + MIR SINE MIR 92 262 0 358 318 89 77 chr11 133138533 133138870 -17644683 + L2 LINE L2 2927 3267 -5 2350 102 0 3 chr11 133139940 133140243 -17643310 + AluSg SINE Alu 1 302 -8 355 241 19 28 chr11 133140553 133140661 -17642892 + MER112 DNA MER1_type 36 142 -118 645 153 0 0 chr11 133140672 133140796 -17642757 + C-rich Low_complexity Low_complexity 3 126 0 186 366 42 0 chr11 133141652 133141723 -17641830 - MIR SINE MIR -71 191 118 429 276 60 0 chr11 133141812 133141946 -17641607 - MER5B DNA MER1_type -36 142 1 203 260 0 0 chr11 133142254 133142304 -17641249 + L2 LINE L2 3193 3242 -71 575 286 55 0 chr11 133142454 133142636 -17640917 - MIR SINE MIR 0 262 71 325 289 0 0 chr11 133143639 133143722 -17639831 + MIR SINE MIR 85 167 -95 282 403 30 0 chr11 133145002 133145136 -17638417 - MIR3 SINE MIR -23 185 48 869 278 82 73 chr11 133145342 133145820 -17637733 - MLT1H1 LTR MaLR -37 518 39 358 244 126 30 chr11 133146048 133146183 -17637370 + MIR SINE MIR 20 167 -95 285 266 184 0 chr11 133146596 133146705 -17636848 + MIR SINE MIR 18 146 -62 301 164 11 66 chr11 133146935 133147118 -17636435 + GA-rich Low_complexity Low_complexity 1 173 0 263 179 26 39 chr11 133147134 133147212 -17636341 + GA-rich Low_complexity Low_complexity 3 79 0 2029 126 0 0 chr11 133147313 133147606 -17635947 - AluSx SINE Alu -18 294 2 288 211 0 0 chr11 133147616 133147673 -17635880 - MIR SINE MIR -108 154 98 369 0 0 0 chr11 133147832 133147873 -17635680 + (TCC)n Simple_repeat Simple_repeat 1 41 0 213 309 25 25 chr11 133148247 133148328 -17635225 - MER5B DNA MER1_type -24 154 74 383 341 0 0 chr11 133150243 133150369 -17633184 - L2 LINE L2 -217 3055 2930 212 256 0 0 chr11 133150453 133150496 -17633057 - L2 LINE L2 -23 3290 3248 556 265 80 10 chr11 133150935 133151268 -17632285 - LTR33 LTR ERVL -141 380 2 1184 245 135 58 chr11 133151524 133152059 -17631494 - MLT1K LTR MaLR 0 588 13 315 314 21 14 chr11 133152849 133152989 -17630564 + GA-rich Low_complexity Low_complexity 3 143 0 298 343 20 20 chr11 133154696 133154842 -17628711 - MIR SINE MIR -42 220 75 475 311 78 6 chr11 133154906 133155086 -17628467 - MER91A DNA MER1_type -3 193 1 254 250 23 23 chr11 133156925 133157013 -17626540 - MIR3 SINE MIR -12 196 109 * 304 264 66 16 chr11 133156999 133157126 -17626427 + MIR SINE MIR 36 172 -60 270 254 102 42 chr11 133157126 133157244 -17626309 + L2 LINE L2 3189 3313 0 2219 98 7 0 chr11 133157381 133157678 -17625875 - AluSg SINE Alu -11 299 1 214 245 0 0 chr11 133158414 133158467 -17625086 + CT-rich Low_complexity Low_complexity 1 53 0 198 316 51 0 chr11 133161865 133161944 -17621609 + MIR SINE MIR 59 141 -121 1734 82 0 47 chr11 133161944 133162199 -17621354 + AluSq SINE Alu 58 300 -13 353 291 73 26 chr11 133163098 133163249 -17620304 - MIR SINE MIR -77 185 28 230 388 44 6 chr11 133163515 133163675 -17619878 + L2 LINE L2 2545 2710 -604 535 229 134 3 chr11 133163815 133163999 -17619554 - L1ME2 LINE L1 0 6178 5966 1620 117 147 8 chr11 133164109 133164375 -17619178 - AluSx SINE Alu -9 303 1 418 268 102 32 chr11 133164699 133164856 -17618697 + MIR SINE MIR 87 254 -8 352 276 82 42 chr11 133164907 133165146 -17618407 - MIR SINE MIR -11 251 2 2305 198 125 8 chr11 133165582 133166087 -17617466 - MLT1F1 LTR MaLR -3 564 1 1150 205 149 28 chr11 133166467 133166789 -17616764 + MLT1A1 LTR MaLR 3 363 -2 290 191 11 56 chr11 133167953 133168042 -17615511 + GA-rich Low_complexity Low_complexity 2 86 0 562 252 53 7 chr11 133168042 133168193 -17615360 - MIR SINE MIR -77 185 28 610 313 94 0 chr11 133168893 133169117 -17614436 - MIR SINE MIR -17 245 1 926 274 54 0 chr11 133169296 133169537 -17614016 + MIR SINE MIR 9 262 0 301 257 29 0 chr11 133170579 133170649 -17612904 + L2 LINE L2 3201 3272 0 470 325 82 60 chr11 133171641 133172252 -17611301 - L2 LINE L2 0 3272 2650 368 210 234 105 chr11 133173828 133174076 -17609477 + Charlie8 DNA MER1_type 1 280 -2137 336 372 103 29 chr11 133174286 133174627 -17608926 + LTR16C LTR ERVL 126 491 0 831 335 53 24 chr11 133174966 133175161 -17608392 + HERV16 LTR ERVL 1023 1211 -3785 1650 194 132 28 chr11 133175161 133175584 -17607969 + MLT1C LTR MaLR 1 467 0 831 335 53 24 chr11 133175584 133175803 -17607750 + HERV16 LTR ERVL 1211 1449 -3547 5431 327 70 42 chr11 133175967 133179303 -17604250 + HERV16 LTR ERVL 1727 5212 -442 1799 117 0 11 chr11 133179303 133179588 -17603965 + AluSc SINE Alu 37 309 0 5431 327 70 42 chr11 133179588 133179721 -17603832 + HERV16 LTR ERVL 5212 5340 -314 806 232 0 0 chr11 133179768 133179910 -17603643 + FRAM SINE Alu 18 159 -17 501 306 91 41 chr11 133180421 133180741 -17602812 + LTR16C LTR ERVL 156 491 0 227 143 24 0 chr11 133180796 133180838 -17602715 + Charlie8 DNA MER1_type 1375 1417 -1000 210 317 0 0 chr11 133181661 133181721 -17601832 - L2 LINE L2 -6 3266 3207 250 308 115 0 chr11 133182211 133182315 -17601238 - MLT1J LTR MaLR -109 402 287 4456 268 115 12 chr11 133182939 133184658 -17598895 - L2 LINE L2 -980 2334 439 411 288 73 1 chr11 133186872 133187015 -17596538 + MIR SINE MIR 4 157 -60 412 286 54 30 chr11 133188069 133188237 -17595316 - L3 LINE CR1 -5 1572 1401 287 301 289 0 chr11 133188259 133188415 -17595138 - MIR SINE MIR -15 247 47 328 264 7 90 chr11 133188465 133188620 -17594933 - L3 LINE CR1 -180 1397 1256 353 245 49 0 chr11 133188639 133188741 -17594812 - L3 LINE CR1 -537 1040 934 975 178 0 22 chr11 133188764 133188949 -17594604 - AluJo SINE Alu -45 267 87 329 295 16 16 chr11 133189008 133189130 -17594423 - L3 LINE CR1 -788 789 668 372 289 50 8 chr11 133189832 133189953 -17593600 - L3 LINE CR1 -1046 531 406 776 286 44 4 chr11 133189953 133190180 -17593373 - MLT1L LTR MaLR 0 615 380 407 321 67 0 chr11 133190385 133190519 -17593034 - L3 LINE CR1 -1192 385 243 906 130 0 65 chr11 133190596 133190765 -17592788 - AluSg/x SINE Alu 0 310 153 1301 140 36 72 chr11 133190771 133190959 -17592594 - AluJo SINE Alu -23 289 113 2751 101 3 6 chr11 133190959 133191324 -17592229 + THE1B LTR MaLR 1 364 0 1301 140 36 72 chr11 133191324 133191414 -17592139 - AluJo SINE Alu -199 113 21 773 250 59 34 chr11 133191523 133191759 -17591794 + MIR SINE MIR 6 247 -15 1142 246 92 42 chr11 133192647 133193102 -17590451 - MLT1H LTR MaLR 0 549 72 560 244 214 10 chr11 133193273 133193474 -17590079 - MIR SINE MIR -2 260 19 699 159 8 30 chr11 133193716 133193848 -17589705 - FLAM_C SINE Alu -10 133 5 262 316 52 17 chr11 133194616 133194790 -17588763 + L1MC/D LINE L1 5708 5887 -1921 296 97 42 28 chr11 133194824 133194896 -17588657 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 208 234 0 65 chr11 133198113 133198190 -17585363 + C-rich Low_complexity Low_complexity 3 74 0 320 378 57 10 chr11 133199103 133199312 -17584241 + L2 LINE L2 2601 2819 -495 187 349 130 38 chr11 133199374 133199689 -17583864 + L2 LINE L2 2924 3267 -5 871 277 95 36 chr11 133201377 133201819 -17581734 - LTR33 LTR ERVL -2 519 1 2442 142 102 83 chr11 133202891 133203373 -17580180 + MLT2B3 LTR ERVL 1 496 -58 2637 82 3 3 chr11 133203373 133203727 -17579826 + THE1A LTR MaLR 1 354 -1 2442 142 102 83 chr11 133203727 133203786 -17579767 + MLT2B3 LTR ERVL 496 552 -2 562 274 107 47 chr11 133203789 133204023 -17579530 + MIR SINE MIR 15 262 0 345 338 18 18 chr11 133204147 133204375 -17579178 - L2 LINE L2 -101 3171 2944 180 111 0 0 chr11 133204730 133204757 -17578796 + (CCA)n Simple_repeat Simple_repeat 2 28 0 276 346 30 0 chr11 133205258 133205359 -17578194 + MIR SINE MIR 81 184 -78 1944 66 12 0 chr11 133206640 133206898 -17576655 - L1PA8 LINE L1 -1 6171 5911 233 272 62 0 chr11 133208064 133208145 -17575408 - MIR SINE MIR -74 188 103 207 295 92 69 chr11 133208314 133208487 -17575066 - MER5A DNA MER1_type -3 186 10 231 160 0 40 chr11 133209278 133209328 -17574225 - L2 LINE L2 -5 3308 3261 254 220 34 0 chr11 133209378 133209437 -17574116 + MER5B DNA MER1_type 1 61 -117 197 332 117 57 chr11 133209580 133209805 -17573748 + L2 LINE L2 2992 3237 -35 458 273 5 93 chr11 133209805 133210010 -17573543 - MER5A DNA MER1_type -1 188 2 197 332 117 57 chr11 133210010 133210049 -17573504 + L2 LINE L2 3237 3272 0 574 226 146 35 chr11 133210050 133210249 -17573304 + L1MD2 LINE L1 6172 7985 -10 600 193 17 85 chr11 133210592 133210768 -17572785 + MER5B DNA MER1_type 5 168 -10 2071 145 0 13 chr11 133211895 133212198 -17571355 + AluSx SINE Alu 1 299 -13 235 173 13 67 chr11 133212312 133212387 -17571166 - MIR SINE MIR -55 153 83 726 259 78 5 chr11 133212948 133213141 -17570412 + MIR SINE MIR 54 260 -2 350 248 185 6 chr11 133213315 133213472 -17570081 - MIR SINE MIR 0 262 78 876 242 103 56 chr11 133214320 133214716 -17568837 - LTR16A1 LTR ERVL -30 427 13 401 260 73 24 chr11 133217238 133217361 -17566192 - L2 LINE L2 -2 3311 3183 226 299 31 0 chr11 133217580 133217677 -17565876 + MIR SINE MIR 47 146 -62 220 337 10 20 chr11 133217724 133217825 -17565728 - MIR3 SINE MIR 0 208 109 255 382 37 16 chr11 133218844 133219035 -17564518 + MIR SINE MIR 34 228 -34 1011 296 60 26 chr11 133219937 133220434 -17563119 - LTR33 LTR ERVL -5 516 3 302 256 41 0 chr11 133220678 133220772 -17562781 + MIR SINE MIR 52 152 -71 612 253 47 21 chr11 133220903 133221093 -17562460 - L2 LINE L2 -1 3312 3118 237 218 115 0 chr11 133221126 133221213 -17562340 - LTR33 LTR ERVL -168 353 257 342 296 116 26 chr11 133221218 133221281 -17562272 - L2 LINE L2 -217 3096 3040 1839 131 51 4 chr11 133221281 133221556 -17561997 - AluJo SINE Alu -6 306 19 342 296 116 26 chr11 133221556 133221725 -17561828 - L2 LINE L2 -273 3040 2843 1010 263 169 15 chr11 133221741 133222284 -17561269 - L2 LINE L2 -642 2672 2046 435 296 161 34 chr11 133222544 133223438 -17560115 + L1MC4a LINE L1 3805 4812 -1334 320 259 153 44 chr11 133224120 133224348 -17559205 + L1MC4a LINE L1 4931 5133 -1013 207 0 0 0 chr11 133224348 133224371 -17559182 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 320 259 153 44 chr11 133224371 133224555 -17558998 + L1MC4a LINE L1 5133 5388 -758 270 321 103 52 chr11 133224664 133225110 -17558443 + L1MC4a LINE L1 5506 5974 -1834 469 287 39 55 chr11 133225458 133225639 -17557914 + MIR SINE MIR 14 191 -71 1908 163 39 11 chr11 133227056 133227411 -17556142 + MLT1A1 LTR MaLR 1 365 0 2188 95 7 3 chr11 133227530 133227875 -17555678 + AluSp SINE Alu 1 346 0 296 261 14 0 chr11 133230544 133230613 -17552940 - L2 LINE L2 0 3313 3244 418 335 163 29 chr11 133233648 133234060 -17549493 - L2 LINE L2 -2 3270 2804 294 225 11 22 chr11 133234263 133234352 -17549201 - L2 LINE L2 -68 3245 3158 1382 251 147 39 chr11 133234776 133235769 -17547784 + L2 LINE L2 2242 3313 0 906 336 73 28 chr11 133235918 133236835 -17546718 - L2 LINE L2 -789 2525 1568 529 295 20 0 chr11 133237255 133237404 -17546149 + MIR SINE MIR 3 154 -108 957 266 153 40 chr11 133237861 133238313 -17545240 + MLT1J LTR MaLR 5 507 -4 301 297 69 59 chr11 133238452 133238654 -17544899 - MIR SINE MIR 0 262 59 1722 191 13 24 chr11 133238805 133239187 -17544366 - L1MB1 LINE L1 -1 6167 5790 470 157 24 0 chr11 133239190 133239287 -17544266 + L1MB1 LINE L1 5710 5808 -374 191 280 20 0 chr11 133239594 133239644 -17543909 - L2 LINE L2 -51 3221 3171 268 284 0 14 chr11 133239914 133239979 -17543574 - L2 LINE L2 -218 3054 2989 2603 66 0 3 chr11 133239979 133240284 -17543269 + AluSc SINE Alu 1 304 -5 654 308 46 17 chr11 133241652 133241889 -17541664 - MIR SINE MIR -11 251 8 310 279 15 29 chr11 133243302 133243438 -17540115 + CT-rich Low_complexity Low_complexity 4 137 0 23 33 0 0 chr11 133243527 133243557 -17539996 + AT_rich Low_complexity Low_complexity 1 30 0 2523 71 0 3 chr11 133243679 133243987 -17539566 - AluY SINE Alu -4 307 1 227 196 20 0 chr11 133244540 133244591 -17538962 - L1MB1 LINE L1 -354 5767 5716 542 323 144 9 chr11 133244761 133245108 -17538445 - L2 LINE L2 -9 3304 2911 673 267 101 9 chr11 133246218 133246435 -17537118 + MIR SINE MIR 3 239 -23 238 302 0 10 chr11 133247857 133247953 -17535600 + CT-rich Low_complexity Low_complexity 1 95 0 342 252 7 110 chr11 133248595 133248750 -17534803 + L2 LINE L2 2916 3054 -218 431 284 83 12 chr11 133249812 133249981 -17533572 - MIR SINE MIR -70 192 12 2015 198 97 12 chr11 133250056 133250552 -17533001 + MLT1F LTR MaLR 3 540 -2 1132 156 0 11 chr11 133252782 133252961 -17530592 + AluJb SINE Alu 136 312 0 450 0 0 0 chr11 133253774 133253824 -17529729 + (CA)n Simple_repeat Simple_repeat 1 50 0 1724 159 3 31 chr11 133253847 133254137 -17529416 - AluJo SINE Alu -30 282 1 728 195 0 0 chr11 133254155 133254278 -17529275 - FLAM_C SINE Alu -10 123 1 284 342 108 0 chr11 133254348 133254459 -17529094 - L2 LINE L2 0 3272 3150 1263 160 19 5 chr11 133254822 133255035 -17528518 + AluJb SINE Alu 86 301 -11 303 191 0 0 chr11 133255035 133255103 -17528450 + GA-rich Low_complexity Low_complexity 1 68 0 423 286 96 0 chr11 133255452 133255630 -17527923 - MER117 DNA MER1_type 0 197 3 679 270 50 9 chr11 133255644 133255866 -17527687 + MIR SINE MIR 22 252 -10 288 234 132 66 chr11 133256266 133256433 -17527120 + L1MB2 LINE L1 5831 6008 -163 226 165 71 82 chr11 133256627 133256712 -17526841 + L1MA10 LINE L1 6250 6333 -1 2600 11 11 0 chr11 133257389 133257670 -17525883 - AluYa5 SINE Alu 0 311 28 2446 84 3 10 chr11 133257692 133258002 -17525551 - AluSg SINE Alu -2 308 1 223 246 88 0 chr11 133259541 133259598 -17523955 + L2 LINE L2 3210 3271 -1 1746 172 72 12 chr11 133259744 133260104 -17523449 + MLT1A2 LTR MaLR 2 511 0 219 368 11 0 chr11 133260181 133260268 -17523285 + MIR3 SINE MIR 13 100 -108 239 120 0 40 chr11 133262941 133262991 -17520562 + (TGAA)n Simple_repeat Simple_repeat 4 51 0 295 283 94 7 chr11 133262995 133263133 -17520420 - L2 LINE L2 0 3313 3164 357 43 0 0 chr11 133263956 133264003 -17519550 + (TG)n Simple_repeat Simple_repeat 1 47 0 199 377 113 0 chr11 133264085 133264191 -17519362 + MIR SINE MIR 20 137 -125 525 286 50 98 chr11 133264292 133264649 -17518904 + LTR16A LTR ERVL 105 444 -6 350 325 72 18 chr11 133264771 133264937 -17518616 - MER5B DNA MER1_type -3 175 1 220 309 29 58 chr11 133264955 133265094 -17518459 - MIR SINE MIR -58 150 23 226 329 0 12 chr11 133265262 133265347 -17518206 - L2 LINE L2 -186 3086 3003 593 247 0 32 chr11 133265662 133265820 -17517733 + MIR SINE MIR 45 197 -65 234 0 0 0 chr11 133265826 133265852 -17517701 + (A)n Simple_repeat Simple_repeat 1 26 0 204 217 24 24 chr11 133267072 133267155 -17516398 + GA-rich Low_complexity Low_complexity 6 88 0 1690 144 61 13 chr11 133267602 133267915 -17515638 + MLT1A1 LTR MaLR 1 328 -37 403 291 8 16 chr11 133268182 133268309 -17515244 - MIR SINE MIR -67 141 16 1339 272 77 15 chr11 133268571 133269049 -17514504 - L3 LINE CR1 -213 1364 857 565 316 38 19 chr11 133269049 133269261 -17514292 - L3 LINE CR1 -1102 475 260 2143 103 0 0 chr11 133269265 133269567 -17513986 - L1PA6 LINE L1 0 6154 5853 2921 42 3 0 chr11 133269567 133269945 -17513608 + L1P LINE L1 4641 5019 -1127 264 312 145 11 chr11 133270720 133270906 -17512647 + L3 LINE CR1 1260 1470 -107 481 243 59 151 chr11 133271706 133272011 -17511542 - L2 LINE L2 -1 3271 2995 279 240 85 62 chr11 133272089 133272218 -17511335 - L2 LINE L2 -5 3267 3136 298 365 94 16 chr11 133272549 133272895 -17510658 - L2 LINE L2 -213 3059 2690 688 224 0 7 chr11 133273289 133273441 -17510112 + MER53 DNA DNA 22 172 -17 219 344 16 48 chr11 133274552 133274677 -17508876 + L2 LINE L2 2957 3077 -195 577 113 28 9 chr11 133275638 133275744 -17507809 + MSTB LTR MaLR 319 426 0 636 346 25 44 chr11 133277026 133277457 -17506096 - MLT1K LTR MaLR -24 564 142 264 274 0 36 chr11 133277424 133277508 -17506045 - MLT1K LTR MaLR -346 242 162 * 237 295 16 41 chr11 133277772 133277894 -17505659 + CT-rich Low_complexity Low_complexity 1 119 0 240 305 45 73 chr11 133279200 133279377 -17504176 + MIR3 SINE MIR 3 174 -34 766 172 0 15 chr11 133280053 133280187 -17503366 + FLAM_A SINE Alu 2 133 0 214 262 0 16 chr11 133280262 133280323 -17503230 + (TGAA)n Simple_repeat Simple_repeat 1 60 0 762 298 34 45 chr11 133280536 133281030 -17502523 - L1MEd LINE L1 -4939 1180 692 555 243 97 123 chr11 133281435 133281785 -17501768 + MER102b DNA MER1_type 1 341 0 563 295 7 0 chr11 133282023 133282172 -17501381 + MIR SINE MIR 88 237 -25 205 268 85 12 chr11 133282226 133282308 -17501245 - MIR3 SINE MIR -17 191 104 396 55 0 0 chr11 133282680 133282735 -17500818 + (CA)n Simple_repeat Simple_repeat 2 56 0 513 266 0 0 chr11 133283199 133283353 -17500200 + (CA)n Simple_repeat Simple_repeat 2 155 0 483 254 93 0 chr11 133283426 133283631 -17499922 + L2 LINE L2 1903 2126 -1188 344 231 87 58 chr11 133283653 133283757 -17499796 - L1ME LINE L1 -605 5516 5410 246 291 285 25 chr11 133283774 133284097 -17499456 - L2 LINE L2 -507 2807 2401 201 88 73 15 chr11 133285279 133285347 -17498206 + (TA)n Simple_repeat Simple_repeat 2 73 0 248 242 0 0 chr11 133285397 133285459 -17498094 - MIR SINE MIR -179 83 22 1004 126 15 0 chr11 133285888 133286023 -17497530 - AluSg/x SINE Alu -20 292 156 633 313 31 8 chr11 133286189 133286445 -17497108 - L1ME4a LINE L1 -206 5915 5654 1487 186 16 4 chr11 133286590 133286843 -17496710 + AluJb SINE Alu 40 295 -17 1083 91 0 40 chr11 133286843 133287018 -17496535 + L1PA10 LINE L1 6000 6167 -1 463 122 70 9 chr11 133287018 133287131 -17496422 + L1MB1 LINE L1 6044 6165 -3 1123 175 92 0 chr11 133287258 133287486 -17496067 - MER63 DNA MER1_type -812 249 1 420 279 16 8 chr11 133287813 133287942 -17495611 + L2 LINE L2 2569 2698 -616 866 183 0 70 chr11 133287942 133288128 -17495425 - FRAM SINE Alu 0 176 4 949 254 154 43 chr11 133288133 133288161 -17495392 + L2 LINE L2 2687 2710 -603 2015 125 14 0 chr11 133288161 133288469 -17495084 + AluY SINE Alu 1 312 0 949 254 154 43 chr11 133288469 133289000 -17494553 + L2 LINE L2 2710 3310 -3 1247 214 41 98 chr11 133289147 133289586 -17493967 - MLT2D LTR ERVL 0 414 1 553 255 12 43 chr11 133290829 133290990 -17492563 - L2 LINE L2 0 3313 3158 728 290 19 14 chr11 133290997 133291204 -17492349 + MIR SINE MIR 35 242 -20 441 36 0 0 chr11 133292312 133292367 -17491186 + (CA)n Simple_repeat Simple_repeat 2 56 0 2162 108 3 7 chr11 133292367 133292654 -17490899 - AluSq SINE Alu -27 286 1 377 288 68 8 chr11 133292883 133293043 -17490510 + MIR SINE MIR 21 208 -54 21 0 0 0 chr11 133293668 133293689 -17489864 + AT_rich Low_complexity Low_complexity 1 21 0 965 299 121 9 chr11 133297296 133297883 -17485670 - L2 LINE L2 -1 3312 2669 184 291 108 90 chr11 133299769 133300037 -17483516 - L2 LINE L2 -2 3270 2998 1808 106 0 40 chr11 133300063 133300337 -17483216 + AluSx SINE Alu 1 263 -49 235 0 28 28 chr11 133300370 133300406 -17483147 + (TG)n Simple_repeat Simple_repeat 1 36 0 29 78 0 0 chr11 133300609 133300673 -17482880 + GC_rich Low_complexity Low_complexity 1 64 0 30 59 0 0 chr11 133300800 133300851 -17482702 + GC_rich Low_complexity Low_complexity 1 51 0 204 135 0 0 chr11 133300886 133300923 -17482630 + (CTG)n Simple_repeat Simple_repeat 1 37 0 223 303 101 37 chr11 133301445 133301554 -17481999 + MIR3 SINE MIR 78 193 -15 180 0 0 0 chr11 133301816 133301836 -17481717 + (TGGG)n Simple_repeat Simple_repeat 3 22 0 1240 202 23 12 chr11 133303358 133303615 -17479938 + AluJo SINE Alu 1 260 -52 538 258 23 0 chr11 133303728 133303856 -17479697 + MIR SINE MIR 39 169 -93 755 164 5 145 chr11 133304492 133304653 -17478900 + MER5B DNA MER1_type 1 128 -50 1759 95 0 40 chr11 133304653 133304905 -17478648 + AluSg SINE Alu 24 265 -45 755 164 5 145 chr11 133304905 133304950 -17478603 + MER5B DNA MER1_type 128 178 0 2243 120 0 0 chr11 133306863 133307164 -17476389 + AluSx SINE Alu 1 301 -11 386 247 24 0 chr11 133307207 133307292 -17476261 + MIR SINE MIR 67 153 -109 316 260 41 71 chr11 133308907 133309076 -17474477 - MLT1J LTR MaLR 0 511 348 315 234 234 22 chr11 133309271 133309408 -17474145 + MIR3 SINE MIR 16 181 -27 219 316 107 86 chr11 133309976 133310350 -17473203 - L2 LINE L2 -1 3271 2890 770 282 5 10 chr11 133311064 133311259 -17472294 - MIR SINE MIR -66 196 3 2212 103 7 0 chr11 133311841 133312143 -17471410 + AluSx SINE Alu 1 304 -8 2353 94 0 0 chr11 133312197 133312506 -17471047 + AluSc SINE Alu 1 309 0 290 342 0 50 chr11 133312677 133312797 -17470756 + MIR3 SINE MIR 51 164 -44 354 270 201 25 chr11 133312817 133312976 -17470577 + MIR SINE MIR 15 201 -61 301 235 37 12 chr11 133313950 133314031 -17469522 - MIR SINE MIR -67 195 113 349 298 255 0 chr11 133315714 133315875 -17467678 + MIR SINE MIR 16 217 -45 407 315 189 17 chr11 133316693 133316995 -17466558 - L2 LINE L2 -1 3271 2918 2029 134 10 0 chr11 133317655 133317947 -17465606 - AluSq SINE Alu -18 295 1 222 162 0 0 chr11 133317947 133317984 -17465569 + L2 LINE L2 3022 3058 -214 272 314 144 0 chr11 133318073 133318191 -17465362 + MIR SINE MIR 84 218 -44 249 33 0 0 chr11 133318381 133318411 -17465142 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 451 278 151 7 chr11 133319768 133319938 -17463615 + MIR SINE MIR 23 218 -44 244 178 22 0 chr11 133321080 133321125 -17462428 - MER5A DNA MER1_type -10 179 134 227 271 260 0 chr11 133322027 133322123 -17461430 + MIR3 SINE MIR 82 202 -6 2069 101 4 0 chr11 133322247 133322525 -17461028 + AluSx SINE Alu 23 301 -11 247 306 124 8 chr11 133322530 133322651 -17460902 - L1ME LINE L1 -484 5637 5503 2540 184 22 13 chr11 133322656 133323113 -17460440 - MLT2C2 LTR ERVL -1 463 3 199 349 41 53 chr11 133324444 133324613 -17458940 + L3 LINE CR1 1371 1537 -40 211 291 146 0 chr11 133326460 133326570 -17456983 + MIR3 SINE MIR 59 184 -24 594 323 96 0 chr11 133326619 133326839 -17456714 + MIR SINE MIR 16 256 -6 279 302 66 19 chr11 133327043 133327149 -17456404 - MIR3 SINE MIR 0 208 98 2308 93 3 0 chr11 133327525 133327836 -17455717 + AluSp SINE Alu 2 313 0 225 220 20 0 chr11 133327967 133328017 -17455536 - L2 LINE L2 -16 3256 3206 2227 99 17 0 chr11 133328120 133328422 -17455131 + AluSc SINE Alu 1 307 -2 616 296 70 13 chr11 133332539 133332769 -17450784 - MIR SINE MIR -12 250 8 185 364 87 41 chr11 133333026 133333221 -17450332 + L3b LINE CR1 1291 1494 -89 21 0 0 0 chr11 133334241 133334262 -17449291 + AT_rich Low_complexity Low_complexity 1 21 0 410 159 0 0 chr11 133335207 133335270 -17448283 + FRAM/FAM SINE Alu 24 86 -90 223 300 0 0 chr11 133336381 133336431 -17447122 + MIR SINE MIR 69 118 -90 478 276 130 12 chr11 133336437 133336644 -17446909 + MIR SINE MIR 7 235 -27 202 375 55 23 chr11 133337333 133337461 -17446092 - MIR SINE MIR -61 147 16 994 118 13 0 chr11 133337537 133337690 -17445863 - FRAM SINE Alu -20 156 2 532 305 76 14 chr11 133337916 133338139 -17445414 - MIR SINE MIR -10 252 16 302 297 34 17 chr11 133338128 133338246 -17445307 + MIR3 SINE MIR 52 171 -37 * 195 184 0 82 chr11 133338527 133338576 -17444977 - L2 LINE L2 -85 3228 3184 393 273 28 70 chr11 133338634 133338777 -17444776 - MIR SINE MIR -66 196 60 2316 78 0 3 chr11 133338878 133339172 -17444381 + AluSx SINE Alu 3 295 -17 1621 183 0 21 chr11 133339172 133339456 -17444097 - AluJo SINE Alu -34 278 1 186 43 0 0 chr11 133339501 133339524 -17444029 + (CA)n Simple_repeat Simple_repeat 1 23 0 432 275 23 15 chr11 133339976 133340107 -17443446 - AluSp/q SINE Alu -8 305 174 2184 94 7 3 chr11 133340207 133340495 -17443058 - AluSg SINE Alu -21 289 1 389 290 0 0 chr11 133340495 133340602 -17442951 - L3b LINE CR1 -161 1422 1316 2270 105 0 3 chr11 133340603 133340909 -17442644 - AluSx SINE Alu -7 305 1 270 148 164 0 chr11 133341466 133341527 -17442026 - MER5C DNA MER1_type 0 324 254 2332 92 3 0 chr11 133341657 133341960 -17441593 - AluSx SINE Alu -8 304 1 218 320 64 0 chr11 133341960 133342038 -17441515 - MER5C DNA MER1_type -215 109 27 369 359 60 0 chr11 133344351 133344518 -17439035 + MIR3 SINE MIR 29 205 -3 708 216 72 12 chr11 133344629 133344796 -17438757 + MIR SINE MIR 86 262 0 944 276 16 12 chr11 133345268 133345522 -17438031 + MIR SINE MIR 6 260 -2 309 309 12 0 chr11 133345580 133345664 -17437889 - MIR3 SINE MIR -48 160 76 403 273 25 16 chr11 133346274 133346395 -17437158 + MIR SINE MIR 21 142 -120 350 340 27 7 chr11 133346789 133346936 -17436617 + MIR3 SINE MIR 33 182 -26 205 250 0 0 chr11 133347684 133347728 -17435825 - MIR3 SINE MIR -12 196 153 188 259 153 12 chr11 133347895 133347980 -17435573 - MIR3 SINE MIR -105 103 7 1686 190 7 3 chr11 133349193 133349482 -17434071 + AluJb SINE Alu 7 296 -16 333 0 0 0 chr11 133349563 133349600 -17433953 + (TG)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chr11 133349600 133349620 -17433933 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 310 186 12 70 chr11 133349663 133349749 -17433804 + MIR SINE MIR 79 159 -103 561 286 95 71 chr11 133350181 133350475 -17433078 - L3 LINE CR1 -1 1576 1276 209 300 38 12 chr11 133350505 133350585 -17432968 - MIR SINE MIR -7 255 174 349 212 51 17 chr11 133350585 133350703 -17432850 - L1MC4 LINE L1 -1 8041 7920 232 317 28 0 chr11 133350842 133350987 -17432566 - L1MC5 LINE L1 -169 7792 7644 312 107 0 179 chr11 133351294 133351344 -17432209 - L1MB2 LINE L1 -1 6170 6113 394 45 0 45 chr11 133351344 133351411 -17432142 + (TTTA)n Simple_repeat Simple_repeat 2 65 0 2133 121 0 0 chr11 133351411 133351692 -17431861 - AluSg SINE Alu -29 281 1 312 107 0 179 chr11 133351692 133351724 -17431829 - L1MB2 LINE L1 -56 6115 6102 691 255 25 45 chr11 133351726 133351969 -17431584 - L3 LINE CR1 -702 875 638 265 338 22 37 chr11 133352355 133352491 -17431062 - L2 LINE L2 -48 3265 3132 1410 165 129 0 chr11 133352491 133352590 -17430963 + AluJb SINE Alu 1 86 -226 393 22 0 0 chr11 133352590 133352636 -17430917 + (CA)n Simple_repeat Simple_repeat 1 46 0 1410 165 129 0 chr11 133352636 133352784 -17430769 + AluJb SINE Alu 86 280 -32 411 285 106 13 chr11 133352811 133352962 -17430591 - L2 LINE L2 -188 3084 2920 347 307 50 29 chr11 133353038 133353226 -17430327 - MIR3 SINE MIR -66 196 4 1717 292 161 11 chr11 133354212 133355362 -17428191 + L2 LINE L2 1984 3313 0 1971 115 61 4 chr11 133355536 133355815 -17427738 - AluSx SINE Alu -17 295 1 233 140 53 18 chr11 133356184 133356241 -17427312 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 369 227 69 89 chr11 133356389 133356592 -17426961 + L1ME4a LINE L1 5711 5909 -212 28 48 0 0 chr11 133356618 133356660 -17426893 + AT_rich Low_complexity Low_complexity 1 42 0 1983 149 3 7 chr11 133356719 133357045 -17426508 - AluJb SINE Alu 0 312 1 449 265 10 0 chr11 133358479 133358581 -17424972 + MIR SINE MIR 40 142 -66 251 261 130 0 chr11 133358618 133358687 -17424866 - L2 LINE L2 -46 3226 3149 275 265 53 68 chr11 133358817 133358949 -17424604 - L2 LINE L2 -195 3077 2948 1967 157 0 3 chr11 133359104 133359397 -17424156 - AluJb SINE Alu -20 292 1 467 311 115 44 chr11 133359534 133359830 -17423723 + L3b LINE CR1 1261 1577 -6 529 216 25 145 chr11 133360490 133360731 -17422822 - MIR SINE MIR -25 237 26 391 300 50 7 chr11 133361230 133361370 -17422183 + MIR3 SINE MIR 30 175 -33 2244 127 0 6 chr11 133362137 133362451 -17421102 + AluSx SINE Alu 1 312 0 686 117 9 0 chr11 133362451 133362562 -17420991 + (GGAA)n Simple_repeat Simple_repeat 1 112 0 864 272 53 9 chr11 133362567 133362795 -17420758 + MIR SINE MIR 25 262 0 280 333 136 51 chr11 133362802 133363603 -17419950 - L2 LINE L2 -743 2571 1703 211 167 24 0 chr11 133364688 133364730 -17418823 - L2 LINE L2 -89 3183 3141 1073 91 0 0 chr11 133365269 133365401 -17418152 + AluSx SINE Alu 1 132 -181 280 136 11 57 chr11 133365432 133365520 -17418033 + A-rich Low_complexity Low_complexity 5 88 0 1473 89 0 16 chr11 133365524 133365715 -17417838 + AluSx SINE Alu 116 303 -9 1412 269 94 33 chr11 133365807 133365897 -17417656 - MER20B DNA MER1_type -5 778 695 2058 133 6 19 chr11 133365897 133366213 -17417340 + AluSx SINE Alu 1 312 0 1412 269 94 33 chr11 133366213 133366818 -17416735 - MER20B DNA MER1_type -88 695 6 187 267 0 133 chr11 133366944 133367004 -17416549 - L2 LINE L2 -88 3184 3133 1309 74 17 0 chr11 133367151 133367326 -17416227 + L1PA7 LINE L1 5976 6153 -1 506 296 143 16 chr11 133367376 133367607 -17415946 - MIR SINE MIR -1 261 4 614 285 13 6 chr11 133367662 133367820 -17415733 + MIR SINE MIR 104 262 0 568 296 31 0 chr11 133368618 133368777 -17414776 - MIR SINE MIR -13 249 86 637 174 28 35 chr11 133368801 133368945 -17414608 - MIR SINE MIR -32 230 88 299 96 19 0 chr11 133369000 133369052 -17414501 + (GA)n Simple_repeat Simple_repeat 1 53 0 243 251 205 0 chr11 133369688 133369794 -17413759 - MIR SINE MIR -61 147 57 614 290 87 9 chr11 133370144 133370375 -17413178 + MIR SINE MIR 14 262 0 2114 140 13 0 chr11 133370777 133371084 -17412469 + AluSx SINE Alu 1 311 -1 432 0 0 0 chr11 133372176 133372224 -17411329 + (TG)n Simple_repeat Simple_repeat 2 49 0 1856 106 0 8 chr11 133372347 133372592 -17410961 + AluSx SINE Alu 49 291 -21 290 273 101 0 chr11 133373817 133373916 -17409637 - L3 LINE CR1 -300 1277 1169 459 331 49 79 chr11 133374012 133374286 -17409267 - L1MC4a LINE L1 -1755 6053 5791 2145 120 0 7 chr11 133374286 133374587 -17408966 - AluSx SINE Alu -13 299 1 459 331 49 79 chr11 133374587 133374681 -17408872 - L1MC4a LINE L1 -2017 5791 5696 221 377 0 69 chr11 133374700 133374830 -17408723 - L3 LINE CR1 -429 1148 1028 216 284 52 60 chr11 133374864 133374980 -17408573 - L2 LINE L2 -18 3295 3181 * 949 307 186 29 chr11 133374979 133375565 -17407988 - L3 LINE CR1 -552 1025 348 354 245 85 58 chr11 133375597 133375799 -17407754 + MIR SINE MIR 37 238 -24 210 294 60 13 chr11 133375931 133376026 -17407527 - MIR SINE MIR -39 169 62 372 130 0 0 chr11 133376491 133376560 -17406993 + (A)n Simple_repeat Simple_repeat 1 69 0 277 282 78 10 chr11 133376869 133376972 -17406581 + MIR SINE MIR 20 129 -79 306 317 24 0 chr11 133377176 133377299 -17406254 + (TA)n Simple_repeat Simple_repeat 1 126 0 279 298 100 118 chr11 133378082 133378411 -17405142 + L2 LINE L2 2949 3271 -1 493 299 29 29 chr11 133378901 133379108 -17404445 + MIR SINE MIR 6 212 -50 213 300 0 0 chr11 133379201 133379251 -17404302 + (TG)n Simple_repeat Simple_repeat 2 51 0 392 259 61 117 chr11 133379687 133379884 -17403669 + MIR3 SINE MIR 2 187 -21 479 304 0 9 chr11 133380018 133380130 -17403423 + MIR SINE MIR 34 144 -118 2479 97 0 0 chr11 133380199 133380509 -17403044 - AluY SINE Alu -1 310 1 281 333 13 50 chr11 133380522 133380681 -17402872 - MIR3 SINE MIR -40 168 16 221 28 83 0 chr11 133380752 133380788 -17402765 + A-rich Low_complexity Low_complexity 2 40 0 204 352 28 19 chr11 133382292 133382400 -17401153 + MIR SINE MIR 17 125 -83 29 0 0 0 chr11 133383347 133383376 -17400177 + AT_rich Low_complexity Low_complexity 1 29 0 301 311 0 39 chr11 133384489 133384592 -17398961 - MIR SINE MIR -64 144 46 3477 96 22 2 chr11 133384801 133385293 -17398260 - L1PA13 LINE L1 -3 6160 5659 1463 145 0 31 chr11 133386179 133386407 -17397146 - AluJo SINE Alu -19 293 73 221 291 35 23 chr11 133387702 133387788 -17395765 - L2 LINE L2 -85 3187 3101 319 245 147 0 chr11 133388660 133388762 -17394791 - MIR SINE MIR -3 259 143 2273 121 0 0 chr11 133388883 133389181 -17394372 + AluSx SINE Alu 1 298 -14 584 255 23 16 chr11 133389525 133389702 -17393851 + MIR SINE MIR 29 206 -56 184 296 0 0 chr11 133389727 133389771 -17393782 - MIR SINE MIR -135 73 30 625 330 16 5 chr11 133391283 133391477 -17392076 - MER91A DNA MER1_type 0 196 1 192 171 38 162 chr11 133391676 133391781 -17391772 - MIR3 SINE MIR -7 201 110 * 272 344 100 20 chr11 133391764 133392014 -17391539 - L2 LINE L2 -661 2653 2384 2083 156 10 0 chr11 133392453 133392761 -17390792 + AluJb SINE Alu 1 311 -1 300 27 0 0 chr11 133393344 133393381 -17390172 + (A)n Simple_repeat Simple_repeat 1 37 0 21 36 0 0 chr11 133393392 133393420 -17390133 + GC_rich Low_complexity Low_complexity 1 28 0 338 238 0 25 chr11 133393552 133393632 -17389921 - L1MC4 LINE L1 -1351 6691 6614 272 232 85 24 chr11 133394317 133394399 -17389154 - L2 LINE L2 -1 3271 3185 2319 86 0 0 chr11 133395564 133395874 -17387679 + AluSg SINE Alu 1 281 -29 3177 184 16 4 chr11 133396733 133397288 -17386265 + MER68 LTR ERV1 1 562 0 21 0 0 0 chr11 133399067 133399088 -17384465 + AT_rich Low_complexity Low_complexity 1 21 0 843 159 88 22 chr11 133399096 133399278 -17384275 + MLT1B LTR MaLR 2 195 -195 267 31 0 0 chr11 133399278 133399310 -17384243 + (CA)n Simple_repeat Simple_repeat 1 32 0 250 143 122 0 chr11 133399310 133399359 -17384194 + MLT1B LTR MaLR 150 204 -263 233 191 128 0 chr11 133399384 133399431 -17384122 + MLT1B LTR MaLR 143 195 -195 273 57 0 0 chr11 133399436 133399471 -17384082 + (CA)n Simple_repeat Simple_repeat 2 36 0 233 191 128 0 chr11 133399471 133399518 -17384035 + MLT1B LTR MaLR 143 195 -195 207 139 0 0 chr11 133399518 133399554 -17383999 + (CA)n Simple_repeat Simple_repeat 1 36 0 268 149 128 0 chr11 133399554 133399601 -17383952 + MLT1B LTR MaLR 143 195 -195 327 85 0 0 chr11 133399601 133399648 -17383905 + (CA)n Simple_repeat Simple_repeat 1 47 0 336 127 0 0 chr11 133399678 133399733 -17383820 + (CA)n Simple_repeat Simple_repeat 2 56 0 233 191 128 0 chr11 133399733 133399780 -17383773 + MLT1B LTR MaLR 143 195 -195 189 107 0 0 chr11 133399780 133399808 -17383745 + (CA)n Simple_repeat Simple_repeat 1 28 0 233 191 128 0 chr11 133399808 133399855 -17383698 + MLT1B LTR MaLR 143 195 -195 180 111 0 0 chr11 133399863 133399890 -17383663 + (CA)n Simple_repeat Simple_repeat 2 28 0 294 29 0 0 chr11 133399938 133399973 -17383580 + (CA)n Simple_repeat Simple_repeat 2 36 0 291 93 0 0 chr11 133400014 133400057 -17383496 + (CA)n Simple_repeat Simple_repeat 1 43 0 1199 164 14 0 chr11 133400124 133400331 -17383222 + MLT1B LTR MaLR 181 390 0 2351 66 24 7 chr11 133400355 133400644 -17382909 + AluY SINE Alu 1 294 -17 255 253 11 69 chr11 133402426 133402513 -17381040 + MIR SINE MIR 45 126 -82 206 180 40 0 chr11 133402533 133402583 -17380970 + GA-rich Low_complexity Low_complexity 3 54 0 252 0 0 0 chr11 133403179 133403207 -17380346 + (A)n Simple_repeat Simple_repeat 1 28 0 1106 151 23 50 chr11 133404646 133404864 -17378689 - MER20 DNA MER1_type -2 217 6 180 297 94 31 chr11 133405110 133405238 -17378315 - L3 LINE CR1 -12 1565 1430 2519 83 0 3 chr11 133406891 133407204 -17376349 + AluSx SINE Alu 1 312 0 302 0 0 85 chr11 133407318 133407365 -17376188 + (C)n Simple_repeat Simple_repeat 1 43 0 330 26 0 0 chr11 133407365 133407404 -17376149 + (A)n Simple_repeat Simple_repeat 1 39 0 716 269 56 0 chr11 133407531 133407747 -17375806 - MIR SINE MIR -4 258 31 1712 259 134 11 chr11 133408091 133408946 -17374607 - L2 LINE L2 -121 3192 2235 588 304 113 50 chr11 133409178 133410367 -17373186 - L2 LINE L2 -1 3271 2021 182 248 148 126 chr11 133410383 133410539 -17373014 - L2 LINE L2 -172 3100 2936 2417 98 3 0 chr11 133410539 133410846 -17372707 - AluSq SINE Alu -5 308 1 182 248 148 126 chr11 133410846 133410919 -17372634 - L2 LINE L2 -336 2936 2866 249 304 107 101 chr11 133411046 133411540 -17372013 - L2 LINE L2 -2 3270 2776 494 322 13 0 chr11 133411704 133411853 -17371700 - L2 LINE L2 -5 3267 3117 2228 112 0 0 chr11 133412155 133412464 -17371089 + AluSx SINE Alu 1 309 0 471 327 65 32 chr11 133412874 133413122 -17370431 - MIR SINE MIR -6 256 1 217 316 26 0 chr11 133413145 133413221 -17370332 + L3 LINE CR1 1499 1576 -1 255 253 13 13 chr11 133413358 133413437 -17370116 - MLT1L LTR MaLR -536 79 1 226 264 0 0 chr11 133413990 133414043 -17369510 + MER103 DNA DNA 2 54 -112 354 300 0 0 chr11 133414202 133414292 -17369261 - MER94 DNA DNA -1 133 44 180 0 0 0 chr11 133414292 133414312 -17369241 + (T)n Simple_repeat Simple_repeat 1 20 0 565 209 44 25 chr11 133414700 133414858 -17368695 + MIR SINE MIR 89 249 -13 184 281 188 42 chr11 133415117 133415213 -17368340 + L2 LINE L2 3160 3269 -3 249 303 113 14 chr11 133415280 133415422 -17368131 - MER5A DNA MER1_type -33 156 1 468 226 128 5 chr11 133415543 133415693 -17367860 + MER5A DNA MER1_type 4 176 -13 715 228 62 0 chr11 133415694 133415856 -17367697 + MER5B DNA MER1_type 3 174 -4 221 265 0 15 chr11 133416393 133416461 -17367092 - MIR SINE MIR 0 262 196 350 207 23 0 chr11 133416461 133416548 -17367005 + (CATATA)n Simple_repeat Simple_repeat 4 92 0 699 247 22 6 chr11 133416552 133416730 -17366823 - MIR SINE MIR -58 204 24 2658 140 60 9 chr11 133416731 133417166 -17366387 + LTR32 LTR ERVL 15 471 0 216 237 102 0 chr11 133417303 133417362 -17366191 - L2 LINE L2 -8 3264 3200 2343 78 0 3 chr11 133417630 133417926 -17365627 + AluY SINE Alu 1 295 -16 624 111 0 0 chr11 133418742 133418832 -17364721 - AluY SINE Alu -8 303 214 2482 85 0 3 chr11 133418977 133419284 -17364269 - AluSp SINE Alu -7 306 1 328 321 12 48 chr11 133419378 133419529 -17364024 - MIR3 SINE MIR -41 167 21 1941 157 13 3 chr11 133419529 133419834 -17363719 - AluJb SINE Alu -2 310 3 328 321 12 48 chr11 133419834 133419850 -17363703 - MIR3 SINE MIR -187 21 6 1013 168 22 22 chr11 133421225 133421410 -17362143 - L1MB7 LINE L1 -2 6182 5998 255 61 0 0 chr11 133422539 133422572 -17360981 + (T)n Simple_repeat Simple_repeat 1 33 0 2214 93 16 19 chr11 133422755 133423066 -17360487 - AluSg SINE Alu 0 310 1 402 209 12 0 chr11 133423660 133423745 -17359808 + FRAM/FAM SINE Alu 1 69 -97 272 239 22 22 chr11 133424124 133424216 -17359337 + MIR SINE MIR 53 144 -118 320 250 21 10 chr11 133424464 133424560 -17358993 - MIR SINE MIR -91 117 21 358 240 35 99 chr11 133424852 133425023 -17358530 - MIR SINE MIR -1 261 102 249 33 0 0 chr11 133425029 133425059 -17358494 + (T)n Simple_repeat Simple_repeat 1 30 0 26 18 0 71 chr11 133425080 133425136 -17358417 + GC_rich Low_complexity Low_complexity 1 52 0 234 91 0 0 chr11 133427324 133427357 -17356196 + (T)n Simple_repeat Simple_repeat 1 33 0 2231 80 28 0 chr11 133429403 133429689 -17353864 - AluSx SINE Alu -16 296 3 239 292 15 0 chr11 133430385 133430450 -17353103 - MIR SINE MIR -169 93 28 189 309 36 27 chr11 133430583 133430693 -17352860 - L3b LINE CR1 -110 1473 1363 2407 103 0 3 chr11 133432316 133432628 -17350925 + AluSx SINE Alu 1 311 -1 1580 46 0 16 chr11 133433398 133433592 -17349961 - MER107 DNA MER1_type 0 197 7 2517 60 3 0 chr11 133433755 133434055 -17349498 + AluY SINE Alu 1 301 -10 24 0 0 0 chr11 133434236 133434260 -17349293 + AT_rich Low_complexity Low_complexity 1 24 0 1092 260 30 33 chr11 133434543 133434878 -17348675 - MLT1I LTR MaLR -17 392 59 556 283 68 14 chr11 133435033 133435252 -17348301 - L1MC5 LINE L1 -30 7931 7701 728 178 0 7 chr11 133435447 133435599 -17347954 + CT-rich Low_complexity Low_complexity 4 154 0 336 24 0 0 chr11 133435600 133435641 -17347912 + (TG)n Simple_repeat Simple_repeat 2 42 0 28 0 0 0 chr11 133436594 133436622 -17346931 + AT_rich Low_complexity Low_complexity 1 28 0 1806 132 85 47 chr11 133436724 133436893 -17346660 + MER46B DNA MER2_type 3 68 -2663 2234 112 3 0 chr11 133436893 133437196 -17346357 + AluSp SINE Alu 1 304 -9 1806 132 85 47 chr11 133437196 133437368 -17346185 + MER46B DNA MER2_type 68 232 -4 183 80 0 0 chr11 133437773 133437798 -17345755 + (TG)n Simple_repeat Simple_repeat 2 26 0 457 194 127 80 chr11 133437844 133438082 -17345471 + MIR SINE MIR 15 262 0 2459 75 0 0 chr11 133438570 133438863 -17344690 + AluY SINE Alu 4 296 -15 2221 70 28 7 chr11 133439401 133439685 -17343868 + AluY SINE Alu 1 290 -21 399 252 180 46 chr11 133439802 133440175 -17343378 + L1MDa LINE L1 1322 1744 -4796 426 221 28 94 chr11 133441020 133441201 -17342352 - MER112 DNA MER1_type -1 259 91 483 144 0 63 chr11 133441343 133441488 -17342065 - AluSg/x SINE Alu 0 345 208 531 216 101 0 chr11 133441972 133442120 -17341433 - MIR SINE MIR -37 225 63 1592 152 205 22 chr11 133442153 133442514 -17341039 - MSTA LTR MaLR -1 427 1 2002 93 0 0 chr11 133445383 133445640 -17337913 - AluSq SINE Alu -56 257 1 434 319 71 0 chr11 133445647 133445829 -17337724 - MIR SINE MIR -11 251 57 217 306 78 63 chr11 133447355 133447561 -17335992 - L3 LINE CR1 -24 1553 1345 192 303 141 42 chr11 133448043 133448185 -17335368 - MIR3 SINE MIR -23 185 30 374 353 59 32 chr11 133449243 133449430 -17334123 - MIR SINE MIR -24 238 47 935 154 6 25 chr11 133449437 133449599 -17333954 + FRAM SINE Alu 8 166 -10 1870 146 10 3 chr11 133450094 133450388 -17333165 - AluSx SINE Alu -16 296 1 349 326 246 5 chr11 133450699 133450886 -17332667 - MIR SINE MIR -11 251 20 188 35 35 0 chr11 133450886 133450915 -17332638 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1556 111 131 12 chr11 133450919 133451163 -17332390 - AluSg SINE Alu -37 273 1 617 315 77 73 chr11 133451166 133451450 -17332103 - L2 LINE L2 -30 3242 2961 1918 158 0 0 chr11 133451450 133451734 -17331819 - AluSx SINE Alu -23 289 6 617 315 77 73 chr11 133451734 133452097 -17331456 - L2 LINE L2 -311 2961 2595 1985 214 65 52 chr11 133452394 133452440 -17331113 - MLT1F LTR MaLR -1 541 497 1068 159 24 19 chr11 133452440 133452647 -17330906 - MER3 DNA MER1_type -1 208 1 1985 214 65 52 chr11 133452647 133453100 -17330453 - MLT1F LTR MaLR -45 497 32 1614 164 10 64 chr11 133453100 133453411 -17330142 - AluJb SINE Alu -18 294 1 1985 214 65 52 chr11 133453411 133453444 -17330109 - MLT1F LTR MaLR -510 32 1 394 239 41 87 chr11 133454157 133454263 -17329290 + MER113 DNA MER1_type? 4 96 -425 1994 147 3 3 chr11 133454263 133454562 -17328991 - AluJb SINE Alu -13 299 1 394 239 41 87 chr11 133454562 133454673 -17328880 + MER113 DNA MER1_type? 96 211 -310 1810 115 112 29 chr11 133455037 133455349 -17328204 + MER1B DNA MER1_type 1 338 -1 2536 68 0 0 chr11 133456688 133456996 -17326557 + AluY SINE Alu 1 308 -3 25 0 0 0 chr11 133457295 133457320 -17326233 + AT_rich Low_complexity Low_complexity 1 25 0 518 194 176 12 chr11 133457341 133457511 -17326042 - MER113 DNA MER1_type? -320 201 4 609 243 103 0 chr11 133457841 133457977 -17325576 - FRAM SINE Alu -16 150 1 442 298 13 0 chr11 133458191 133458342 -17325211 + L1ME4a LINE L1 5503 5655 -466 230 278 144 23 chr11 133458485 133458686 -17324867 + L1ME4a LINE L1 5757 5999 -122 1251 201 119 11 chr11 133458686 133458955 -17324598 - AluSg SINE Alu -11 299 2 230 278 144 23 chr11 133458955 133459016 -17324537 + L1ME4a LINE L1 5999 6051 -70 211 323 16 0 chr11 133459289 133459351 -17324202 - L2 LINE L2 -809 2505 2443 1737 186 10 0 chr11 133459845 133460136 -17323417 + AluJo SINE Alu 1 294 -18 813 115 0 0 chr11 133460204 133460317 -17323236 - FLAM_C SINE Alu -20 123 11 2271 107 0 3 chr11 133460602 133460900 -17322653 + AluSx SINE Alu 1 297 -15 273 57 0 0 chr11 133461216 133461251 -17322302 + (T)n Simple_repeat Simple_repeat 1 35 0 27 29 0 0 chr11 133461251 133461285 -17322268 + GC_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr11 133461435 133461457 -17322096 + AT_rich Low_complexity Low_complexity 1 22 0 2558 75 0 0 chr11 133461472 133461780 -17321773 - AluSg SINE Alu -2 308 1 1763 180 0 31 chr11 133461805 133462122 -17321431 + AluJb SINE Alu 1 307 -5 581 185 0 9 chr11 133462204 133462312 -17321241 - AluJ SINE Alu -23 289 183 1122 155 0 11 chr11 133462378 133462559 -17320994 - AluJ SINE Alu -133 179 1 338 314 57 29 chr11 133462600 133462775 -17320778 - MIR SINE MIR -34 228 49 27 0 0 0 chr11 133462828 133462855 -17320698 + AT_rich Low_complexity Low_complexity 1 27 0 1185 107 37 0 chr11 133462855 133463042 -17320511 - L1PA13 LINE L1 -5 6158 5965 2171 135 0 0 chr11 133463234 133463545 -17320008 - AluSx SINE Alu -1 311 1 25 95 0 0 chr11 133464209 133464283 -17319270 + AT_rich Low_complexity Low_complexity 1 74 0 912 296 73 25 chr11 133464283 133464855 -17318698 - L1M4 LINE L1 -1166 4980 4381 300 348 18 0 chr11 133464864 133464976 -17318577 + CT-rich Low_complexity Low_complexity 4 117 0 297 359 47 36 chr11 133465022 133465193 -17318360 + MIR SINE MIR 3 172 -63 2256 85 7 0 chr11 133465323 133465617 -17317936 + AluSp SINE Alu 1 296 -17 363 310 35 49 chr11 133466833 133466975 -17316578 + MIR SINE MIR 46 185 -77 572 149 43 0 chr11 133467565 133467659 -17315894 + L2 LINE L2 3215 3312 -1 2365 80 3 0 chr11 133467923 133468223 -17315330 - AluSp SINE Alu -12 301 1 27 49 0 0 chr11 133468833 133468874 -17314679 + AT_rich Low_complexity Low_complexity 1 41 0 2588 173 64 13 chr11 133469677 133470226 -17313327 - L1MC3 LINE L1 0 7785 7209 4542 190 101 68 chr11 133470589 133470630 -17312923 - L1ME1 LINE L1 -10 6156 6118 3972 119 34 0 chr11 133470630 133471254 -17312299 - L1MA3 LINE L1 -3 6302 5658 4542 190 101 68 chr11 133471254 133471465 -17312088 - L1ME1 LINE L1 -48 6118 5915 1395 171 59 31 chr11 133471465 133471751 -17311802 - AluJo SINE Alu -18 294 1 4542 190 101 68 chr11 133471751 133472049 -17311504 - L1ME1 LINE L1 -251 5915 5628 799 143 15 15 chr11 133472049 133472182 -17311371 - FLAM_C SINE Alu 0 133 1 4542 190 101 68 chr11 133472182 133474226 -17309327 - L1ME1 LINE L1 -538 5628 3480 273 233 41 27 chr11 133474225 133474298 -17309255 - L1ME3A LINE L1 -168 6002 5929 * 6001 217 114 67 chr11 133474281 133474800 -17308753 - L1MC3 LINE L1 -10 7775 7282 269 318 0 0 chr11 133474800 133474863 -17308690 - MLT1F1 LTR MaLR -438 129 67 6001 217 114 67 chr11 133474863 133476363 -17307190 - L1MC3 LINE L1 -503 7282 5595 686 284 30 11 chr11 133476360 133476628 -17306925 - L1ME3A LINE L1 -223 5947 5675 * 350 274 170 14 chr11 133476665 133476877 -17306676 - L1ME3A LINE L1 -566 5604 5360 245 347 27 41 chr11 133476926 133476972 -17306581 - L2 LINE L2 -2881 433 388 2356 71 3 0 chr11 133476972 133477268 -17306285 + AluY SINE Alu 1 297 -14 245 347 27 41 chr11 133477268 133477379 -17306174 - L2 LINE L2 -2926 388 277 3291 122 26 39 chr11 133477379 133477913 -17305640 - MER1A DNA MER1_type 0 527 1 245 347 27 41 chr11 133477913 133477973 -17305580 - L2 LINE L2 -3037 277 218 207 241 86 0 chr11 133480802 133480860 -17302693 - MIR SINE MIR -30 232 170 323 333 105 0 chr11 133480923 133481037 -17302516 - MIR SINE MIR -109 153 28 230 257 248 20 chr11 133481118 133481219 -17302334 + MIR3 SINE MIR 42 165 -43 266 216 14 40 chr11 133481470 133481544 -17302009 + L2 LINE L2 3242 3313 0 3112 193 63 77 chr11 133482041 133482964 -17300589 - L1ME1 LINE L1 -4 6162 5227 188 33 0 33 chr11 133482964 133482994 -17300559 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2001 125 0 28 chr11 133482996 133483285 -17300268 - AluSq SINE Alu -32 281 1 3112 193 63 77 chr11 133483285 133483577 -17299976 - L1ME1 LINE L1 -940 5226 4980 1305 91 2 0 chr11 133483580 133484128 -17299425 - L1MA2 LINE L1 0 6304 5670 648 311 44 24 chr11 133484869 133485120 -17298433 + MIR SINE MIR 7 262 0 810 300 118 38 chr11 133486110 133486618 -17296935 + L2 LINE L2 2736 3286 -27 551 262 49 11 chr11 133486618 133486801 -17296752 - MLT1L LTR MaLR 0 615 426 194 398 39 16 chr11 133487201 133487329 -17296224 - L2 LINE L2 -4 3309 3179 3923 240 51 20 chr11 133487379 133488337 -17295216 + L1MEc LINE L1 2170 3097 -3118 1589 151 92 0 chr11 133488337 133488609 -17294944 - AluJo SINE Alu -15 297 1 3923 240 51 20 chr11 133488609 133488889 -17294664 + L1MEc LINE L1 3097 3410 -2805 2080 137 3 0 chr11 133488889 133489195 -17294358 + AluSx SINE Alu 1 307 -5 3923 240 51 20 chr11 133489195 133489252 -17294301 + L1MEc LINE L1 3410 3464 -2751 215 255 43 11 chr11 133489280 133489374 -17294179 + (TA)n Simple_repeat Simple_repeat 1 97 0 348 197 0 0 chr11 133489374 133489440 -17294113 + L1MEc LINE L1 3860 3925 -2290 * 2519 191 104 21 chr11 133489432 133489621 -17293932 + L1MC3 LINE L1 6422 6594 -1191 2712 71 8 14 chr11 133489621 133489987 -17293566 - THE1B LTR MaLR 0 364 1 2519 191 104 21 chr11 133489987 133490424 -17293129 + L1MC3 LINE L1 6594 7100 -685 297 163 88 38 chr11 133490429 133490509 -17293044 + MLT1F1 LTR MaLR 43 126 -441 830 175 52 0 chr11 133490509 133490663 -17292890 + L1MD3 LINE L1 7405 7566 -429 * 921 189 177 4 chr11 133490656 133490899 -17292654 + L1M4 LINE L1 4822 5106 -1040 368 219 83 10 chr11 133490902 133490998 -17292555 - MLT1C LTR MaLR -364 103 1 225 336 74 0 chr11 133491594 133491716 -17291837 + L1ME4a LINE L1 5687 5817 -1991 308 219 129 65 chr11 133491956 133492111 -17291442 + L1ME4a LINE L1 5901 6065 -56 2023 145 0 19 chr11 133493148 133493466 -17290087 + AluJo SINE Alu 1 312 0 21 57 0 0 chr11 133494254 133494289 -17289264 + AT_rich Low_complexity Low_complexity 1 35 0 402 285 128 34 chr11 133496086 133496265 -17287288 - MIR SINE MIR -19 243 48 2277 121 0 0 chr11 133497340 133497646 -17285907 + AluSx SINE Alu 1 306 -6 196 387 32 0 chr11 133498248 133498341 -17285212 + L2 LINE L2 2212 2307 -1007 224 196 0 39 chr11 133498456 133498507 -17285046 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 234 263 138 46 chr11 133499814 133499966 -17283587 + MIR SINE MIR 94 259 -3 2365 79 0 0 chr11 133500660 133500973 -17282580 - AluY SINE Alu 0 311 1 24 0 0 0 chr11 133502753 133502777 -17280776 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr11 133502833 133502863 -17280690 + AT_rich Low_complexity Low_complexity 1 30 0 215 225 0 0 chr11 133503618 133503658 -17279895 + CT-rich Low_complexity Low_complexity 4 43 0 225 0 0 0 chr11 133505697 133505722 -17277831 + (T)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr11 133505733 133505756 -17277797 + GC_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr11 133505775 133505802 -17277751 + GC_rich Low_complexity Low_complexity 1 27 0 2399 93 0 31 chr11 133505910 133506232 -17277321 - AluSx SINE Alu 0 312 1 1588 175 63 7 chr11 133507103 133507411 -17276142 - AluJb SINE Alu 0 312 1 234 333 63 9 chr11 133507544 133507655 -17275898 - MIR3 SINE MIR -87 121 5 907 211 58 10 chr11 133507965 133508173 -17275380 - MIR SINE MIR -6 256 39 2410 89 3 0 chr11 133508356 133508660 -17274893 - AluSx SINE Alu -7 305 1 192 213 64 0 chr11 133508912 133508959 -17274594 - L2 LINE L2 0 3272 3223 272 324 29 0 chr11 133509597 133509699 -17273854 - MIR SINE MIR -79 183 79 191 325 44 53 chr11 133509909 133509963 -17273590 + L2 LINE L2 3137 3190 -82 2362 93 3 3 chr11 133509963 133510264 -17273289 - AluSc SINE Alu -8 301 1 191 325 44 53 chr11 133510264 133510323 -17273230 + L2 LINE L2 3190 3249 -23 396 322 66 0 chr11 133511256 133511377 -17272176 - MIR3 SINE MIR -48 160 32 510 249 55 18 chr11 133511861 133512026 -17271527 + MIR SINE MIR 42 212 -50 852 198 147 25 chr11 133512047 133512239 -17271314 + L1ME3A LINE L1 5899 6127 -43 1317 164 74 57 chr11 133512239 133512537 -17271016 - AluJb SINE Alu -9 303 1 852 198 147 25 chr11 133512537 133512582 -17270971 + L1ME3A LINE L1 6127 6165 -5 2029 129 3 54 chr11 133512590 133512907 -17270646 + AluSq SINE Alu 1 301 -12 346 179 81 89 chr11 133513042 133513165 -17270388 - MIR SINE MIR -46 162 41 1625 164 39 43 chr11 133514011 133514316 -17269237 - AluJb SINE Alu -8 304 1 1113 90 0 0 chr11 133514316 133514450 -17269103 - AluY SINE Alu -177 134 1 2411 104 5 60 chr11 133514580 133514965 -17268588 - THE1B LTR MaLR 0 364 1 397 297 74 60 chr11 133515019 133515369 -17268184 + L2 LINE L2 2913 3267 -5 196 227 0 61 chr11 133515777 133515843 -17267710 - MIR SINE MIR -29 233 172 601 277 26 13 chr11 133515843 133515998 -17267555 - MIR SINE MIR -50 212 56 307 244 39 0 chr11 133516985 133517063 -17266490 + MIR SINE MIR 72 152 -110 273 239 0 28 chr11 133517127 133517198 -17266355 - L3 LINE CR1 -304 1273 1205 294 209 104 75 chr11 133517459 133517593 -17265960 - MIR SINE MIR -46 216 79 2407 107 0 0 chr11 133517605 133517915 -17265638 - AluSx SINE Alu -2 310 1 354 278 99 111 chr11 133518946 133519280 -17264273 - L2 LINE L2 -18 3254 2925 371 316 14 29 chr11 133519343 133519482 -17264071 - MIR SINE MIR -13 249 113 574 323 144 48 chr11 133519568 133519635 -17263918 - L2 LINE L2 -476 2838 2779 2264 122 3 0 chr11 133519635 133519938 -17263615 + AluSx SINE Alu 1 304 -8 574 323 144 48 chr11 133519938 133520736 -17262817 - L2 LINE L2 -535 2779 1890 535 225 27 0 chr11 133520921 133521032 -17262521 + MER81 DNA DNA 1 114 0 873 201 76 5 chr11 133521055 133521239 -17262314 + MER63A DNA MER1_type 10 206 -4 189 107 0 0 chr11 133521427 133521455 -17262098 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 285 250 0 0 chr11 133521683 133521739 -17261814 + MIR SINE MIR 158 213 -49 583 317 94 110 chr11 133522117 133522950 -17260603 + L3 LINE CR1 117 935 -642 191 255 176 10 chr11 133525474 133525576 -17257977 - MIR SINE MIR -65 197 79 2235 115 23 0 chr11 133526384 133526689 -17256864 + AluSx SINE Alu 1 312 0 812 213 63 11 chr11 133526858 133527032 -17256521 + AluJb SINE Alu 119 301 -11 286 325 111 86 chr11 133527155 133527435 -17256118 + L2 LINE L2 2904 3190 -82 1816 166 24 7 chr11 133527544 133527834 -17255719 - AluJb SINE Alu -17 295 1 4487 166 23 15 chr11 133527852 133528886 -17254667 + L1M2 LINE L1 4497 5532 -745 311 346 28 0 chr11 133528997 133529104 -17254449 - MIR SINE MIR -78 184 75 432 114 53 0 chr11 133529105 133529171 -17254382 + L1PA14 LINE L1 5518 5596 -567 961 113 60 0 chr11 133529171 133529318 -17254235 + L1PA14 LINE L1 6001 6159 -2 432 114 53 0 chr11 133529318 133529341 -17254212 + L1PA14 LINE L1 5596 5616 -547 2118 92 24 14 chr11 133529341 133529634 -17253919 + AluSx SINE Alu 1 296 -16 3726 172 41 18 chr11 133529639 133530370 -17253183 + L1MA10 LINE L1 5586 6333 -1 2176 107 0 0 chr11 133530375 133530656 -17252897 - AluSx SINE Alu -11 301 21 302 320 47 0 chr11 133531011 133531139 -17252414 - MIR SINE MIR -82 180 47 285 253 71 30 chr11 133531379 133531478 -17252075 - L1ME4a LINE L1 -1 6120 6018 462 301 55 7 chr11 133531559 133531705 -17251848 - MIR SINE MIR -96 166 14 226 318 148 29 chr11 133533122 133533399 -17250154 + L2 LINE L2 2916 3225 -47 181 300 172 64 chr11 133534430 133534697 -17248856 - L2 LINE L2 -337 2977 2682 198 265 20 0 chr11 133534810 133534859 -17248694 - MIR SINE MIR -58 150 101 2172 115 0 30 chr11 133535146 133535450 -17248103 - AluSg SINE Alu -15 295 1 206 277 0 0 chr11 133535860 133535907 -17247646 - MER91 DNA MER1_type -3 193 147 294 133 0 33 chr11 133535965 133536025 -17247528 + MLT1K LTR MaLR 508 565 -23 607 290 25 20 chr11 133536026 133536226 -17247327 - L2 LINE L2 -537 2777 2577 931 178 0 4 chr11 133536227 133536436 -17247117 - AluJb SINE Alu -25 287 1 2701 32 0 7 chr11 133536776 133537086 -17246467 - AluY SINE Alu -3 308 1 549 227 259 5 chr11 133538376 133538596 -17244957 - L2 LINE L2 -586 2728 2453 2449 96 0 0 chr11 133539962 133540274 -17243279 + AluSx SINE Alu 1 312 0 240 188 0 0 chr11 133540723 133540771 -17242782 + (TGGG)n Simple_repeat Simple_repeat 2 49 0 330 315 163 30 chr11 133541319 133541760 -17241793 + L2 LINE L2 1814 2313 -1001 2113 133 0 0 chr11 133541794 133542102 -17241451 - AluY SINE Alu -3 308 1 2472 68 3 0 chr11 133542508 133542804 -17240749 + AluY SINE Alu 1 297 -14 577 193 9 0 chr11 133543048 133543157 -17240396 - Tigger3(Golem) DNA MER2_type -1 3028 2919 189 0 0 0 chr11 133543300 133543321 -17240232 + (T)n Simple_repeat Simple_repeat 1 21 0 2205 96 10 10 chr11 133543568 133543861 -17239692 + AluSx SINE Alu 1 293 -19 2242 77 3 11 chr11 133545320 133545606 -17237947 - AluSc SINE Alu -25 284 1 803 242 93 28 chr11 133545639 133545854 -17237699 - MIR SINE MIR -6 256 28 204 40 0 0 chr11 133545866 133545891 -17237662 + (T)n Simple_repeat Simple_repeat 1 25 0 933 294 147 25 chr11 133546041 133546839 -17236714 - L2 LINE L2 -1006 2308 1414 3078 132 49 54 chr11 133546842 133547128 -17236425 + MER21A LTR ERV1 14 300 -631 1990 143 0 0 chr11 133547128 133547407 -17236146 + AluSx SINE Alu 1 279 -33 279 0 0 0 chr11 133547408 133547439 -17236114 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3078 132 49 54 chr11 133547439 133547845 -17235708 + MER21A LTR ERV1 299 752 -179 270 0 0 0 chr11 133547963 133547993 -17235560 + (A)n Simple_repeat Simple_repeat 1 30 0 831 246 64 23 chr11 133548114 133548245 -17235308 + MIR SINE MIR 34 179 -83 2185 144 31 3 chr11 133548245 133548600 -17234953 - MLT1A1 LTR MaLR 0 365 1 831 246 64 23 chr11 133548600 133548688 -17234865 + MIR SINE MIR 179 262 0 1819 121 32 11 chr11 133548941 133549221 -17234332 + AluSx SINE Alu 1 286 -26 325 248 73 44 chr11 133549236 133549373 -17234180 + MIR3 SINE MIR 19 159 -49 275 253 169 0 chr11 133550626 133550709 -17232844 - L2 LINE L2 -13 3300 3204 287 180 33 0 chr11 133552433 133552494 -17231059 - MIR SINE MIR -89 173 111 419 220 73 18 chr11 133552495 133552604 -17230949 - MIR SINE MIR -62 146 32 251 231 230 12 chr11 133553396 133553521 -17230032 + MIR SINE MIR 25 183 -79 24 0 0 0 chr11 133555215 133555239 -17228314 + AT_rich Low_complexity Low_complexity 1 24 0 1235 156 0 47 chr11 133555243 133555455 -17228098 - AluJ SINE Alu -5 307 106 607 160 123 0 chr11 133555501 133555607 -17227946 - AluJ SINE Alu -193 119 1 22 35 0 0 chr11 133555810 133555839 -17227714 + AT_rich Low_complexity Low_complexity 1 29 0 823 252 24 9 chr11 133555986 133556196 -17227357 - MLT1B LTR MaLR 0 390 178 282 340 68 10 chr11 133556864 133556967 -17226586 + L2 LINE L2 2933 3041 -231 204 343 15 0 chr11 133557036 133557103 -17226450 + L2 LINE L2 3203 3270 -2 361 305 55 23 chr11 133558116 133558244 -17225309 - L2 LINE L2 0 3272 3141 748 177 0 0 chr11 133558425 133558549 -17225004 - AluJ SINE Alu -185 127 4 304 348 36 76 chr11 133559909 133560159 -17223394 - L2 LINE L2 -1 3271 3032 1968 76 16 4 chr11 133560324 133560573 -17222980 - AluSc SINE Alu -20 289 38 1757 124 79 38 chr11 133561166 133561456 -17222097 - AluSx SINE Alu -10 302 1 2554 209 98 37 chr11 133561724 133562622 -17220931 - L1ME2 LINE L1 -9 6155 5202 1891 79 65 18 chr11 133562622 133562900 -17220653 - AluY SINE Alu 0 311 21 2554 209 98 37 chr11 133562900 133562997 -17220556 - L1ME2 LINE L1 -962 5202 5112 227 217 0 0 chr11 133563049 133563095 -17220458 + T-rich Low_complexity Low_complexity 1 46 0 241 262 115 8 chr11 133563097 133563219 -17220334 - L1ME2 LINE L1 -1067 5079 4945 212 137 0 59 chr11 133563270 133563321 -17220232 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 570 227 28 85 chr11 133564950 133565090 -17218463 - MIR SINE MIR -96 166 36 2151 82 0 0 chr11 133565090 133565359 -17218194 - AluSc SINE Alu -4 305 37 570 227 28 85 chr11 133565359 133565394 -17218159 - MIR SINE MIR -226 36 1 1660 155 47 50 chr11 133565813 133565946 -17217607 + MER46B DNA MER2_type 1 9 -2722 938 193 12 0 chr11 133565946 133566117 -17217436 + FAM SINE Alu 2 174 -1 1660 155 47 50 chr11 133566117 133566345 -17217208 + MER46B DNA MER2_type 9 236 0 414 300 55 35 chr11 133566698 133567095 -17216458 + L1ME LINE L1 5271 5675 -446 33 0 0 0 chr11 133567629 133567662 -17215891 + AT_rich Low_complexity Low_complexity 1 33 0 916 207 77 5 chr11 133568126 133568334 -17215219 - MER58A DNA MER1_type -1 223 1 190 288 34 17 chr11 133568516 133568575 -17214978 - MIR3 SINE MIR -24 184 125 194 200 0 86 chr11 133568769 133568839 -17214714 + MIR SINE MIR 86 149 -59 842 235 223 0 chr11 133569009 133569256 -17214297 - AluJo SINE Alu 0 302 1 2269 113 0 3 chr11 133570526 133570837 -17212716 - AluSg SINE Alu 0 310 1 1269 178 116 22 chr11 133571082 133571358 -17212195 + AluSg SINE Alu 1 302 -8 438 292 31 15 chr11 133572169 133572299 -17211254 + L2 LINE L2 3176 3307 -6 25 0 0 0 chr11 133573773 133573798 -17209755 + AT_rich Low_complexity Low_complexity 1 25 0 528 284 40 59 chr11 133573873 133574095 -17209458 - MIR SINE MIR -37 225 8 203 287 0 168 chr11 133574363 133574488 -17209065 - MIR3 SINE MIR -31 177 73 2233 103 0 7 chr11 133574669 133574971 -17208582 + AluSx SINE Alu 1 300 -12 29 28 0 0 chr11 133575112 133575148 -17208405 + AT_rich Low_complexity Low_complexity 1 36 0 267 283 193 0 chr11 133576274 133576440 -17207113 - MER112 DNA MER1_type -40 220 23 216 0 0 0 chr11 133576572 133576596 -17206957 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 505 277 79 6 chr11 133576679 133576856 -17206697 - MIR SINE MIR -2 260 71 211 379 43 26 chr11 133577122 133577238 -17206315 + L2 LINE L2 3126 3243 -29 2083 102 0 43 chr11 133577335 133577639 -17205914 + AluSg SINE Alu 1 291 -19 479 250 76 6 chr11 133577878 133578024 -17205529 - MIR SINE MIR -1 261 105 285 245 112 0 chr11 133578079 133578177 -17205376 - Tigger8 DNA MER2_type -228 438 330 475 206 109 68 chr11 133578745 133579066 -17204487 - L1MC5 LINE L1 -367 7594 7261 2454 73 0 7 chr11 133579174 133579477 -17204076 - AluY SINE Alu -10 301 1 673 241 92 72 chr11 133579481 133579970 -17203583 - L1MC5 LINE L1 -720 7241 6743 1458 135 73 0 chr11 133580200 133580459 -17203094 - MER2 DNA MER2_type -6 339 62 32 43 0 0 chr11 133581128 133581174 -17202379 + AT_rich Low_complexity Low_complexity 1 46 0 2245 151 60 7 chr11 133581258 133581689 -17201864 - L1MB3 LINE L1 -26 6157 5704 957 112 15 0 chr11 133581970 133582104 -17201449 - AluSq/x SINE Alu -177 136 1 438 333 47 18 chr11 133582448 133582486 -17201067 + Tigger8 DNA MER2_type 5 40 -626 381 86 0 0 chr11 133582486 133582544 -17201009 + (TATG)n Simple_repeat Simple_repeat 1 58 0 1421 201 45 4 chr11 133582544 133582813 -17200740 - AluJo SINE Alu -31 281 2 438 333 47 18 chr11 133582813 133583009 -17200544 + Tigger8 DNA MER2_type 40 252 -414 706 192 166 31 chr11 133583009 133583202 -17200351 + MER20 DNA MER1_type 1 219 0 438 333 47 18 chr11 133583202 133583241 -17200312 + Tigger8 DNA MER2_type 252 288 -378 2064 212 72 36 chr11 133584158 133584871 -17198682 - L1M4 LINE L1 -1786 4360 3623 411 73 0 0 chr11 133586089 133586144 -17197409 + (CA)n Simple_repeat Simple_repeat 2 56 0 1410 256 66 47 chr11 133586416 133586683 -17196870 + L2 LINE L2 1245 1505 -1809 2062 141 7 0 chr11 133586683 133586981 -17196572 - AluJb SINE Alu -12 300 1 1410 256 66 47 chr11 133586981 133587228 -17196325 + L2 LINE L2 1505 1769 -1545 525 219 168 59 chr11 133587270 133587372 -17196181 + L2 LINE L2 3046 3135 -178 1216 214 92 9 chr11 133587372 133587689 -17195864 - MER2 DNA MER2_type 0 344 2 525 219 168 59 chr11 133587689 133587824 -17195729 + L2 LINE L2 3135 3309 -4 22 0 0 0 chr11 133587863 133587885 -17195668 + AT_rich Low_complexity Low_complexity 1 22 0 2124 127 3 3 chr11 133589281 133589572 -17193981 + AluSq SINE Alu 1 291 -22 2187 67 11 11 chr11 133589581 133589903 -17193650 + AluY SINE Alu 1 322 0 1974 126 11 0 chr11 133591201 133591487 -17192066 + AluSx SINE Alu 1 289 -23 22 35 0 0 chr11 133591508 133591537 -17192016 + AT_rich Low_complexity Low_complexity 1 29 0 211 373 0 0 chr11 133592139 133592198 -17191355 - L2 LINE L2 -86 3186 3128 294 236 260 8 chr11 133592370 133592493 -17191060 + L2 LINE L2 3160 3313 0 2213 112 3 10 chr11 133593083 133593396 -17190157 + AluY SINE Alu 1 311 0 1712 187 10 10 chr11 133593753 133594058 -17189495 + AluJb SINE Alu 1 305 -7 524 291 108 34 chr11 133594165 133594460 -17189093 - L2 LINE L2 -2968 346 30 377 329 6 18 chr11 133594532 133594696 -17188857 + CT-rich Low_complexity Low_complexity 1 162 0 2385 98 0 0 chr11 133594834 133595141 -17188412 - AluSg SINE Alu -3 307 1 193 286 170 33 chr11 133595562 133595744 -17187809 - L2 LINE L2 -2 3311 3105 591 349 102 36 chr11 133596075 133596379 -17187174 - L2 LINE L2 -2475 839 485 2292 105 0 13 chr11 133596379 133596693 -17186860 + AluSx SINE Alu 1 310 -2 591 349 102 36 chr11 133596693 133596909 -17186644 - L2 LINE L2 -2829 485 285 1539 208 10 3 chr11 133597103 133597391 -17186162 + AluJb SINE Alu 1 290 -22 2184 215 87 4 chr11 133598163 133598679 -17184874 - MLT1F1 LTR MaLR -8 559 1 1289 286 132 17 chr11 133598719 133599407 -17184146 + HAL1 LINE L1 1120 1886 -621 882 231 10 29 chr11 133600376 133600584 -17182969 + AluJo SINE Alu 1 204 -108 635 193 0 35 chr11 133601008 133601122 -17182431 + FLAM_A SINE Alu 1 110 -32 198 0 0 0 chr11 133601142 133601164 -17182389 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 24 0 0 0 chr11 133601240 133601264 -17182289 + AT_rich Low_complexity Low_complexity 1 24 0 227 329 97 20 chr11 133602127 133602312 -17181241 - MIR SINE MIR 0 208 20 22 0 0 0 chr11 133602726 133602748 -17180805 + AT_rich Low_complexity Low_complexity 1 22 0 2104 105 10 14 chr11 133603378 133603674 -17179879 - AluSx SINE Alu -17 295 1 9602 126 94 9 chr11 133604554 133606263 -17177290 - Tigger1 DNA MER2_type -563 1855 1 2354 172 19 10 chr11 133606464 133606877 -17176676 + MER47B DNA MER2_type 1 417 -1 2524 73 3 6 chr11 133606908 133607221 -17176332 + AluSp SINE Alu 1 312 -1 2149 123 7 10 chr11 133607961 133608263 -17175290 + AluSx SINE Alu 1 301 -11 2110 136 13 3 chr11 133608389 133608698 -17174855 + AluSx SINE Alu 1 312 0 2133 107 17 3 chr11 133609138 133609427 -17174126 - AluSx SINE Alu -19 293 1 320 289 48 0 chr11 133609679 133609762 -17173791 + MER58A DNA MER1_type 2 88 -19 1110 221 174 82 chr11 133609774 133610308 -17173245 - MLT1E1 LTR MaLR -71 583 1 569 167 10 0 chr11 133610331 133610433 -17173120 + MER58A DNA MER1_type 122 224 0 1738 181 26 0 chr11 133611095 133611399 -17172154 - AluJo SINE Alu 0 312 1 753 276 33 0 chr11 133611484 133611665 -17171888 + MER58A DNA MER1_type 11 197 -27 2228 94 0 7 chr11 133612093 133612415 -17171138 - AluSx SINE Alu 0 320 1 206 276 48 133 chr11 133612560 133612665 -17170888 - MER91C DNA MER1_type -14 126 31 725 337 133 28 chr11 133613284 133614279 -17169274 - L2 LINE L2 -5 3308 2189 384 294 27 75 chr11 133614296 133614483 -17169070 + L1ME2 LINE L1 5477 5654 -2154 476 260 102 0 chr11 133614516 133614643 -17168910 + MER58A DNA MER1_type 85 224 0 1928 198 34 24 chr11 133614796 133615292 -17168261 + L1ME2 LINE L1 5663 6163 -1 378 265 51 97 chr11 133615309 133615505 -17168048 + L1MC4 LINE L1 7839 8025 -17 583 291 50 23 chr11 133615521 133615779 -17167774 + L1MC4a LINE L1 5602 5866 -1942 231 203 16 31 chr11 133615919 133615983 -17167570 + (CATA)n Simple_repeat Simple_repeat 2 64 0 418 277 85 58 chr11 133616196 133616326 -17167227 - L2 LINE L2 -1230 2084 1946 2370 78 0 3 chr11 133616326 133616620 -17166933 - AluY SINE Alu -18 293 1 418 277 85 58 chr11 133616620 133616677 -17166876 - L2 LINE L2 -1368 1946 1892 26 0 0 0 chr11 133616811 133616837 -17166716 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr11 133617042 133617068 -17166485 + AT_rich Low_complexity Low_complexity 1 26 0 1486 206 25 0 chr11 133617079 133617361 -17166192 - AluJo SINE Alu -23 289 1 766 196 118 9 chr11 133618580 133618614 -17164939 - MER5C DNA MER1_type 0 324 295 980 199 0 0 chr11 133618614 133618785 -17164768 - FAM SINE Alu -4 171 1 766 196 118 9 chr11 133618785 133618979 -17164574 - MER5C DNA MER1_type -29 295 71 1938 147 0 10 chr11 133619732 133620038 -17163515 - AluJb SINE Alu -9 303 1 348 281 62 0 chr11 133620160 133620288 -17163265 - L1ME3 LINE L1 -24 6138 6003 351 0 0 0 chr11 133620747 133620786 -17162767 + (TTG)n Simple_repeat Simple_repeat 1 39 0 2198 113 16 7 chr11 133621246 133621555 -17161998 + AluSq SINE Alu 1 312 -1 186 243 0 71 chr11 133621620 133621690 -17161863 - L2 LINE L2 -4 3268 3204 251 302 132 39 chr11 133622702 133622907 -17160646 - L2 LINE L2 -943 2371 2148 180 0 0 0 chr11 133624184 133624204 -17159349 + (TG)n Simple_repeat Simple_repeat 2 21 0 859 258 166 52 chr11 133624223 133624681 -17158872 - L2 LINE L2 0 3313 2804 2549 71 3 0 chr11 133625411 133625721 -17157832 - AluY SINE Alu 0 311 1 2155 82 3 3 chr11 133626126 133626408 -17157145 + AluY SINE Alu 1 282 -29 2123 82 0 4 chr11 133626428 133626696 -17156857 + AluY SINE Alu 1 267 -44 640 182 0 0 chr11 133626929 133627039 -17156514 - Tigger3(Golem) DNA MER2_type -1 3028 2919 1411 161 15 94 chr11 133627182 133627512 -17156041 - AluJb SINE Alu -8 304 1 2383 63 0 0 chr11 133627550 133627837 -17155716 - AluY SINE Alu -24 287 1 1154 73 0 0 chr11 133627837 133627974 -17155579 - AluSq/x SINE Alu -171 141 5 278 197 152 0 chr11 133627977 133628043 -17155510 - Tigger3(Golem) DNA MER2_type -2952 77 2 471 108 36 0 chr11 133633166 133633249 -17150304 - L1MB8 LINE L1 0 6178 6093 345 153 0 0 chr11 133633254 133633326 -17150227 - L1MB3 LINE L1 -2 6181 6110 225 196 0 0 chr11 133633718 133633764 -17149789 + (TA)n Simple_repeat Simple_repeat 2 47 0 1643 163 28 14 chr11 133634534 133634846 -17148707 - AluJb SINE Alu 0 312 1 894 153 116 43 chr11 133634846 133635147 -17148406 - Charlie1a DNA MER1_type -26 1429 1107 862 102 0 0 chr11 133635147 133635265 -17148288 - AluSx SINE Alu -11 299 182 423 139 14 14 chr11 133635271 133635343 -17148210 - AluSx SINE Alu -196 116 45 3862 181 88 28 chr11 133635343 133635968 -17147585 - Charlie1a DNA MER1_type -1646 1115 408 2233 93 3 3 chr11 133635968 133636258 -17147295 + AluSc SINE Alu 1 290 -19 3862 181 88 28 chr11 133636258 133636618 -17146935 - Charlie1a DNA MER1_type -2353 408 71 287 40 0 60 chr11 133636627 133636677 -17146876 + (T)n Simple_repeat Simple_repeat 1 47 0 1657 149 7 42 chr11 133637040 133637329 -17146224 - AluJo SINE Alu -33 279 1 347 200 147 0 chr11 133637329 133637404 -17146149 - Charlie1a DNA MER1_type -1369 86 1 555 263 119 0 chr11 133637406 133637566 -17145987 + MIR SINE MIR 14 192 -70 2460 65 3 0 chr11 133637630 133637936 -17145617 - AluY SINE Alu -4 307 1 1767 180 10 0 chr11 133638087 133638382 -17145171 - AluJo SINE Alu -14 298 1 406 299 30 7 chr11 133639021 133639168 -17144385 + MIR3 SINE MIR 37 187 -21 969 188 0 3 chr11 133639281 133639510 -17144043 - AluJb SINE Alu -4 308 2 309 151 0 0 chr11 133640213 133640266 -17143287 + C-rich Low_complexity Low_complexity 5 57 0 2014 124 0 7 chr11 133640266 133640548 -17143005 - AluSx SINE Alu -32 280 1 2045 93 4 4 chr11 133641322 133641652 -17141901 + AluSc SINE Alu 1 330 0 1567 141 31 28 chr11 133641657 133641912 -17141641 + AluJb SINE Alu 1 256 -56 428 290 168 14 chr11 133641940 133642154 -17141399 - MIR SINE MIR 0 262 16 208 345 131 35 chr11 133642281 133642739 -17140814 - L2 LINE L2 -544 2770 2269 541 289 54 25 chr11 133642812 133643092 -17140461 + L1MD1 LINE L1 5714 6001 -241 * 1538 171 49 42 chr11 133642844 133643254 -17140299 + L1MB7 LINE L1 5747 6159 -25 559 248 149 19 chr11 133643436 133643650 -17139903 + MIR SINE MIR 5 246 -16 2140 138 0 0 chr11 133643743 133644034 -17139519 - AluSx SINE Alu -21 291 1 2213 114 3 0 chr11 133644637 133644944 -17138609 - AluSx SINE Alu -4 308 1 1783 176 0 3 chr11 133646618 133646913 -17136640 + AluJo SINE Alu 1 294 -18 2174 123 0 0 chr11 133647096 133647397 -17136156 + AluSx SINE Alu 1 301 -11 2211 81 7 14 chr11 133648070 133648366 -17135187 - AluSx SINE Alu -18 294 1 754 242 235 50 chr11 133648879 133649080 -17134473 - L3 LINE CR1 0 1577 1415 2350 82 7 0 chr11 133649080 133649372 -17134181 - AluSx SINE Alu -18 294 1 754 242 235 50 chr11 133649372 133649472 -17134081 - L3 LINE CR1 -162 1415 1220 180 292 17 92 chr11 133649831 133649951 -17133602 + L2 LINE L2 3197 3307 -6 191 233 0 14 chr11 133649976 133650049 -17133504 + (TA)n Simple_repeat Simple_repeat 2 73 0 189 381 152 0 chr11 133651014 133651119 -17132434 + L2 LINE L2 3143 3263 -9 242 163 82 0 chr11 133651946 133651995 -17131558 - L2 LINE L2 -1 3271 3219 2053 92 31 3 chr11 133652006 133652300 -17131253 - AluSp SINE Alu -11 302 1 369 363 65 24 chr11 133652736 133652856 -17130697 - L2 LINE L2 -417 2897 2783 2118 71 3 24 chr11 133652856 133653153 -17130400 + AluSc SINE Alu 1 291 -18 369 363 65 24 chr11 133653153 133653324 -17130229 - L2 LINE L2 -531 2783 2594 389 276 19 9 chr11 133654325 133654430 -17129123 - MIR3 SINE MIR -18 190 85 219 240 124 66 chr11 133654601 133654722 -17128831 + MIR SINE MIR 129 256 -6 304 274 26 17 chr11 133655197 133655314 -17128239 + MIR SINE MIR 28 145 -63 2119 97 0 31 chr11 133656245 133656564 -17126989 + AluSg SINE Alu 1 309 -1 2112 101 3 35 chr11 133656574 133656892 -17126661 + AluSc SINE Alu 2 309 0 2076 122 0 3 chr11 133657509 133657804 -17125749 - AluSx SINE Alu -18 294 1 473 242 105 36 chr11 133658267 133658486 -17125067 + L1MC4 LINE L1 7652 7885 -157 403 331 41 7 chr11 133658486 133658631 -17124922 - MIR3 SINE MIR -8 200 51 353 257 113 40 chr11 133658895 133659114 -17124439 + MIR SINE MIR 12 259 -3 1024 223 39 10 chr11 133659243 133659553 -17124000 + L1P LINE L1 4230 4548 -1598 270 0 0 0 chr11 133660462 133660492 -17123061 + (CA)n Simple_repeat Simple_repeat 2 31 0 785 241 6 0 chr11 133710816 133710990 -17072563 - FAM SINE Alu 0 175 1 1854 169 7 10 chr11 133710990 133711297 -17072256 - AluJo SINE Alu -6 306 1 369 294 97 63 chr11 133711693 133711737 -17071816 - L3b LINE CR1 -88 1495 1454 1840 170 7 0 chr11 133711737 133712050 -17071503 + AluJo SINE Alu 1 315 0 369 294 97 63 chr11 133712050 133712216 -17071337 - L3b LINE CR1 -129 1454 1270 2087 148 0 0 chr11 133712216 133712527 -17071026 - AluSx SINE Alu 0 311 1 369 294 97 63 chr11 133712527 133712582 -17070971 - L3b LINE CR1 -313 1270 1218 341 301 87 35 chr11 133713186 133713359 -17070194 - MIR SINE MIR -2 260 79 1440 257 108 45 chr11 133714069 133714293 -17069260 - HAL1 LINE L1 -16 2491 2283 1660 150 18 25 chr11 133714293 133714579 -17068974 - AluJb SINE Alu -12 300 17 1440 257 108 45 chr11 133714579 133715114 -17068439 - HAL1 LINE L1 -224 2283 1684 254 293 0 0 chr11 133715218 133715300 -17068253 - HAL1 LINE L1 -716 1791 1710 227 318 0 0 chr11 133715355 133715418 -17068135 - MIR SINE MIR -127 81 19 1394 192 29 56 chr11 133715791 133716166 -17067387 - MLT1A1 LTR MaLR 0 365 1 245 29 0 29 chr11 133716811 133716846 -17066707 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 384 310 42 0 chr11 133718179 133718321 -17065232 - MIR SINE MIR 0 262 115 * 424 310 203 12 chr11 133718320 133718562 -17064991 + L2 LINE L2 2985 3272 0 192 200 0 0 chr11 133718695 133718730 -17064823 - L2 LINE L2 -9 3304 3270 847 210 25 0 chr11 133719656 133719813 -17063740 + FRAM SINE Alu 1 161 -15 186 167 0 0 chr11 133721890 133721926 -17061627 + (TG)n Simple_repeat Simple_repeat 1 36 0 207 269 0 0 chr11 133722439 133722491 -17061062 + L2 LINE L2 3213 3264 -8 182 250 0 0 chr11 133722729 133722769 -17060784 + MIR SINE MIR 45 84 -178 333 191 16 0 chr11 133722926 133722989 -17060564 - L2 LINE L2 -19 3294 3231 432 248 159 35 chr11 133723171 133723542 -17060011 - L2 LINE L2 -312 3001 2563 2155 180 82 7 chr11 133723585 133724034 -17059519 - L1ME1 LINE L1 -3 6163 5681 2033 121 33 0 chr11 133724036 133724406 -17059147 - AluSx SINE Alu 0 379 1 975 189 0 0 chr11 133724409 133724573 -17058980 - FRAM SINE Alu -13 163 1 1459 194 65 22 chr11 133724573 133725062 -17058491 - L1ME1 LINE L1 -475 5691 5189 2147 136 11 3 chr11 133725238 133725591 -17057962 - L1MB2 LINE L1 -2 6169 5814 2568 65 0 3 chr11 133725640 133725946 -17057607 - AluY SINE Alu -6 305 1 269 151 19 0 chr11 133726101 133726154 -17057399 + (TA)n Simple_repeat Simple_repeat 1 54 0 5703 82 14 0 chr11 133726155 133727379 -17056174 - L1PA15 LINE L1 -13 6152 4964 5739 163 75 10 chr11 133727386 133728126 -17055427 - L1PA15 LINE L1 -1328 4818 3974 2296 126 81 2 chr11 133728126 133728337 -17055216 - MSTA LTR MaLR 0 428 235 189 74 0 0 chr11 133728337 133728364 -17055189 + (CAGAGA)n Simple_repeat Simple_repeat 3 29 0 2296 126 81 2 chr11 133728364 133728549 -17055004 - MSTA LTR MaLR -193 235 1 5739 163 75 10 chr11 133728549 133728971 -17054582 - L1PA15 LINE L1 -2172 3974 3581 1100 144 0 0 chr11 133728968 133729149 -17054404 - L1MB2 LINE L1 -340 5831 5651 * 186 43 0 0 chr11 133729161 133729184 -17054369 + (TC)n Simple_repeat Simple_repeat 2 24 0 1049 152 6 0 chr11 133729184 133729348 -17054205 - AluSg/x SINE Alu -7 305 141 797 178 192 64 chr11 133729353 133729634 -17053919 - L1ME1 LINE L1 -945 5201 4885 629 295 98 7 chr11 133729634 133729929 -17053624 - L2 LINE L2 -775 2539 2218 273 322 59 8 chr11 133730017 133730256 -17053297 - L2 LINE L2 -213 3059 2809 367 264 269 6 chr11 133731212 133731379 -17052174 + MIR SINE MIR 21 231 -31 874 209 5 26 chr11 133732534 133732725 -17050828 - MER20 DNA MER1_type -27 192 6 457 149 0 69 chr11 133733026 133733113 -17050440 - MER5A DNA MER1_type -108 81 1 251 218 218 18 chr11 133733720 133733830 -17049723 - MIR3 SINE MIR -11 197 66 202 280 0 40 chr11 133733990 133734090 -17049463 + (CCCTAA)n Simple_repeat Simple_repeat 5 100 0 259 293 37 0 chr11 133734357 133734439 -17049114 + L2 LINE L2 3229 3313 0 293 321 107 7 chr11 133734605 133734745 -17048808 - MIR SINE MIR -12 250 97 1813 307 135 32 chr11 133736391 133736740 -17046813 + L2 LINE L2 1265 1577 -1737 2244 104 7 3 chr11 133736740 133737039 -17046514 + AluSx SINE Alu 1 300 -12 1813 307 135 32 chr11 133737039 133738036 -17045517 + L2 LINE L2 1577 2470 -844 1722 162 22 18 chr11 133738036 133738314 -17045239 + AluJb SINE Alu 2 280 -32 239 0 32 0 chr11 133738314 133738345 -17045208 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1813 307 135 32 chr11 133738345 133738444 -17045109 + L2 LINE L2 2469 2861 -453 332 206 0 27 chr11 133738449 133738522 -17045031 + MLT1L LTR MaLR 18 88 -527 226 316 13 0 chr11 133738903 133738979 -17044574 + MLT1L LTR MaLR 532 608 -7 446 317 229 0 chr11 133738985 133739357 -17044196 + L2 LINE L2 2851 3307 -6 368 322 199 16 chr11 133739380 133739678 -17043875 + L2 LINE L2 2824 3206 -66 2240 124 3 0 chr11 133739678 133739985 -17043568 - AluSx SINE Alu -4 308 1 368 322 199 16 chr11 133739985 133740062 -17043491 + L2 LINE L2 3206 3268 -4 278 310 99 35 chr11 133740056 133740198 -17043355 - L2 LINE L2 0 3313 3163 * 2375 100 0 0 chr11 133740563 133740864 -17042689 - AluSx SINE Alu -11 301 1 243 267 237 0 chr11 133741070 133741205 -17042348 + MIR SINE MIR 44 210 -52 574 299 103 0 chr11 133742029 133742243 -17041310 - MIR SINE MIR -7 255 20 278 333 171 0 chr11 133742342 133742465 -17041088 - MLT1H LTR MaLR 0 549 406 460 308 6 13 chr11 133742705 133742861 -17040692 - MLT1H LTR MaLR -376 173 19 1866 145 35 3 chr11 133744621 133744910 -17038643 + AluJb SINE Alu 1 298 -14 2351 106 0 0 chr11 133744964 133745265 -17038288 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr11 133745488 133745509 -17038044 + AT_rich Low_complexity Low_complexity 1 21 0 295 292 45 0 chr11 133746327 133746416 -17037137 - MIR SINE MIR -80 182 90 2058 147 0 0 chr11 133746558 133746843 -17036710 - AluJo SINE Alu -27 285 1 667 212 15 0 chr11 133747139 133747276 -17036277 - MER63A DNA MER1_type -27 183 45 684 183 56 0 chr11 133747585 133747727 -17035826 + MER20 DNA MER1_type 36 185 -34 2702 42 0 6 chr11 133747729 133748040 -17035513 + AluY SINE Alu 1 309 -2 257 237 161 11 chr11 133749575 133749668 -17033885 - MIR SINE MIR -79 183 77 421 220 73 18 chr11 133750492 133750601 -17032952 + MIR SINE MIR 32 146 -62 290 180 33 0 chr11 133750602 133750663 -17032890 + MIR SINE MIR 111 173 -89 215 360 79 22 chr11 133751855 133752083 -17031470 - L2 LINE L2 -706 2608 2368 267 253 169 0 chr11 133752388 133752471 -17031082 + L2 LINE L2 3204 3300 -13 327 261 80 42 chr11 133753686 133753861 -17029692 - MIR3 SINE MIR -49 159 19 1862 120 31 21 chr11 133753865 133754156 -17029397 - AluSx SINE Alu -18 294 1 768 246 64 23 chr11 133754409 133754497 -17029056 - MIR SINE MIR 0 262 179 2050 144 31 3 chr11 133754497 133754852 -17028701 + MLT1A1 LTR MaLR 1 365 0 768 246 64 23 chr11 133754852 133754983 -17028570 - MIR SINE MIR -83 179 34 2319 92 0 43 chr11 133755107 133755433 -17028120 - AluSx SINE Alu 0 312 1 1596 175 63 7 chr11 133756304 133756612 -17026941 - AluJb SINE Alu 0 312 1 212 318 23 11 chr11 133756761 133756849 -17026704 - MIR SINE MIR -103 105 17 857 226 53 5 chr11 133757166 133757374 -17026179 - MIR SINE MIR -6 256 39 2427 89 3 0 chr11 133757557 133757861 -17025692 - AluSx SINE Alu -7 305 1 181 213 64 0 chr11 133758113 133758160 -17025393 - L2 LINE L2 0 3272 3223 255 324 29 0 chr11 133758798 133758900 -17024653 - MIR SINE MIR -79 183 79 2354 96 3 3 chr11 133759164 133759465 -17024088 - AluSc SINE Alu -8 301 1 371 322 66 0 chr11 133760457 133760578 -17022975 - MIR3 SINE MIR -48 160 32 458 254 55 18 chr11 133761062 133761227 -17022326 + MIR SINE MIR 42 212 -50 864 198 147 25 chr11 133761248 133761440 -17022113 + L1ME3A LINE L1 5899 6127 -43 1330 164 74 57 chr11 133761440 133761738 -17021815 - AluJb SINE Alu -9 303 1 864 198 147 25 chr11 133761738 133761783 -17021770 + L1ME3A LINE L1 6127 6165 -5 2035 129 3 54 chr11 133761791 133762108 -17021445 + AluSq SINE Alu 1 301 -12 327 179 81 89 chr11 133762243 133762366 -17021187 - MIR SINE MIR -46 162 41 1636 164 39 43 chr11 133763212 133763517 -17020036 - AluJb SINE Alu -8 304 1 1115 90 0 0 chr11 133763517 133763651 -17019902 - AluY SINE Alu -177 134 1 2251 107 5 60 chr11 133763781 133764166 -17019387 - THE1B LTR MaLR 0 364 1 323 300 74 60 chr11 133764220 133764570 -17018983 + L2 LINE L2 2913 3267 -5 575 277 26 13 chr11 133765044 133765199 -17018354 - MIR SINE MIR -50 212 56 283 219 34 0 chr11 133766186 133766264 -17017289 + MIR SINE MIR 72 147 -61 256 239 0 28 chr11 133766328 133766399 -17017154 - L3 LINE CR1 -304 1273 1205 271 209 104 75 chr11 133766660 133766794 -17016759 - MIR SINE MIR -46 216 79 2356 113 0 0 chr11 133766806 133767116 -17016437 - AluSx SINE Alu -2 310 1 234 300 16 123 chr11 133768210 133768463 -17015090 - L2 LINE L2 -108 3164 2939 359 316 14 29 chr11 133768544 133768683 -17014870 - MIR SINE MIR -13 249 113 456 328 141 45 chr11 133768769 133768836 -17014717 - L2 LINE L2 -476 2838 2779 2275 122 3 0 chr11 133768836 133769139 -17014414 + AluSx SINE Alu 1 304 -8 456 328 141 45 chr11 133769139 133769937 -17013616 - L2 LINE L2 -535 2779 1890 493 225 27 0 chr11 133770122 133770233 -17013320 + MER81 DNA DNA 1 114 0 898 201 76 5 chr11 133770256 133770440 -17013113 + MER63A DNA MER1_type 10 206 -4 189 107 0 0 chr11 133770622 133770650 -17012903 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 276 250 0 0 chr11 133770878 133770934 -17012619 + MIR SINE MIR 158 213 -49 506 323 77 113 chr11 133771312 133772114 -17011439 + L3 LINE CR1 117 889 -688 2245 115 23 0 chr11 133775578 133775883 -17007670 + AluSx SINE Alu 1 312 0 743 213 63 11 chr11 133776052 133776226 -17007327 + AluJb SINE Alu 119 301 -11 227 326 109 84 chr11 133776349 133776634 -17006919 + L2 LINE L2 2904 3195 -77 1822 166 24 7 chr11 133776738 133777028 -17006525 - AluJb SINE Alu -17 295 1 4536 166 23 14 chr11 133777046 133778079 -17005474 + L1M2 LINE L1 4497 5532 -745 301 346 28 0 chr11 133778190 133778297 -17005256 - MIR SINE MIR -78 184 75 433 114 53 0 chr11 133778298 133778364 -17005189 + L1PA14 LINE L1 5518 5596 -572 907 113 60 0 chr11 133778364 133778511 -17005042 + L1PA14 LINE L1 6001 6159 -2 433 114 53 0 chr11 133778511 133778534 -17005019 + L1PA14 LINE L1 5596 5616 -552 2171 92 20 14 chr11 133778534 133778828 -17004725 + AluSx SINE Alu 1 296 -16 3504 174 41 18 chr11 133778833 133779564 -17003989 + L1MA10 LINE L1 5586 6333 -1 2183 107 0 0 chr11 133779569 133779850 -17003703 - AluSx SINE Alu -11 301 21 294 322 44 8 chr11 133780205 133780333 -17003220 - MIR SINE MIR -54 154 48 290 274 103 26 chr11 133780573 133780690 -17002863 - L1ME4a LINE L1 -1 6120 5995 429 301 55 7 chr11 133780753 133780899 -17002654 - MIR SINE MIR -96 166 14 183 265 20 0 chr11 133784005 133784054 -16999499 - MIR SINE MIR -58 150 101 2180 115 0 30 chr11 133784341 133784645 -16998908 - AluSg SINE Alu -15 295 1 278 136 0 34 chr11 133785160 133785219 -16998334 + MLT1K LTR MaLR 508 564 -24 2526 64 0 0 chr11 133785383 133785681 -16997872 - AluY SINE Alu 0 311 14 360 320 65 30 chr11 133786051 133786251 -16997302 - MIR SINE MIR -8 254 48 1993 122 17 24 chr11 133786382 133786678 -16996875 - AluSx SINE Alu -18 294 1 416 238 47 76 chr11 133789898 133790070 -16993483 - MIR3 SINE MIR -21 187 21 239 209 0 0 chr11 133790434 133790477 -16993076 + CT-rich Low_complexity Low_complexity 1 43 0 256 125 83 0 chr11 133791001 133791049 -16992504 - L2 LINE L2 0 3313 3262 352 279 174 0 chr11 133791065 133791226 -16992327 - MIR SINE MIR 0 262 74 466 192 75 8 chr11 133792108 133792228 -16991325 + L2 LINE L2 3141 3268 -4 186 313 48 24 chr11 133792646 133792729 -16990824 - MIR3 SINE MIR -27 181 97 285 330 249 0 chr11 133793591 133793788 -16989765 + L3 LINE CR1 1332 1577 0 928 145 0 0 chr11 133794599 133794730 -16988823 + FRAM SINE Alu 17 147 -29 304 279 0 23 chr11 133794730 133794816 -16988737 + L1MC4 LINE L1 6617 6700 -1342 240 259 0 0 chr11 133794816 133794897 -16988656 + (TAGG)n Simple_repeat Simple_repeat 3 83 0 181 57 57 0 chr11 133794899 133794934 -16988619 + GA-rich Low_complexity Low_complexity 1 37 0 309 291 61 34 chr11 133794934 133795082 -16988471 + L1MCa LINE L1 2226 2377 -4049 867 269 40 0 chr11 133795381 133795604 -16987949 + MIR SINE MIR 20 251 -11 3817 243 71 21 chr11 133796030 133797277 -16986276 + L2 LINE L2 1706 3015 -298 6700 72 9 4 chr11 133797349 133798782 -16984771 - L1PA7 LINE L1 0 6154 4634 2246 122 7 0 chr11 133798782 133799086 -16984467 + AluSq SINE Alu 1 306 -7 6700 72 9 4 chr11 133799086 133799707 -16983846 - L1PA7 LINE L1 -1520 4634 4018 583 239 148 19 chr11 133799724 133799933 -16983620 + L2 LINE L2 3078 3313 0 546 350 62 26 chr11 133800545 133800885 -16982668 - L3 LINE CR1 -152 1425 1074 367 291 161 5 chr11 133802016 133802215 -16981338 + MIR SINE MIR 33 262 0 21 0 0 0 chr11 133802215 133802236 -16981317 + AT_rich Low_complexity Low_complexity 1 21 0 589 210 134 0 chr11 133802332 133802489 -16981064 + MIR SINE MIR 84 261 -1 1560 236 135 58 chr11 133802518 133803002 -16980551 - MLT1E2 LTR MaLR -5 619 72 2788 131 20 9 chr11 133803002 133803454 -16980099 - MSTB2 LTR MaLR 0 457 1 1560 236 135 58 chr11 133803454 133803532 -16980021 - MLT1E2 LTR MaLR -552 72 1 410 304 168 5 chr11 133804505 133804719 -16978834 - MIR SINE MIR -11 251 3 2297 122 0 3 chr11 133805267 133805578 -16977975 - AluSg SINE Alu 0 310 1 227 27 0 54 chr11 133805582 133805619 -16977934 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 332 211 256 15 chr11 133805735 133805868 -16977685 - MIR SINE MIR -1 261 97 332 279 90 96 chr11 133806569 133806730 -16976823 + L2 LINE L2 2896 3056 -216 2079 138 0 17 chr11 133806730 133807028 -16976525 - AluSx SINE Alu -19 293 1 332 279 90 96 chr11 133807028 133807242 -16976311 + L2 LINE L2 3056 3269 -3 182 242 263 20 chr11 133807951 133808050 -16975503 + MIR3 SINE MIR 82 204 -4 195 395 136 0 chr11 133809479 133809626 -16973927 + L2 LINE L2 2887 3053 -219 823 304 133 15 chr11 133809795 133810276 -16973277 - L2 LINE L2 -643 2671 2134 1925 172 7 0 chr11 133810683 133810986 -16972567 + AluJo SINE Alu 1 305 -7 2339 46 46 0 chr11 133811357 133811637 -16971916 - AluY SINE Alu -18 293 1 469 252 166 7 chr11 133811869 133812020 -16971533 + MER5A DNA MER1_type 12 186 -3 292 277 12 36 chr11 133812079 133812162 -16971391 - MER5A DNA MER1_type -68 121 41 345 280 134 0 chr11 133812643 133812800 -16970753 + MIR SINE MIR 79 256 -6 337 325 19 28 chr11 133813753 133813958 -16969595 - MIR3 SINE MIR -57 205 2 588 312 64 47 chr11 133813958 133814301 -16969252 - L1ME LINE L1 -5166 953 605 253 271 51 0 chr11 133814863 133814976 -16968577 - L1ME LINE L1 -5960 159 48 225 330 68 10 chr11 133815575 133815678 -16967875 - L2 LINE L2 -49 3223 3115 325 299 52 104 chr11 133816107 133816588 -16966965 + L2 LINE L2 2817 3272 0 239 398 39 31 chr11 133817470 133817726 -16965827 - L3 LINE CR1 -270 1307 1050 532 329 29 9 chr11 133817976 133818186 -16965367 - MIR SINE MIR -6 256 43 194 301 86 71 chr11 133818997 133819266 -16964287 - L2 LINE L2 -50 3222 2950 2258 113 0 0 chr11 133819379 133819672 -16963881 - AluSq SINE Alu -20 293 1 2212 133 3 0 chr11 133819735 133820044 -16963509 - AluSx SINE Alu -2 310 1 185 182 0 0 chr11 133820101 133820134 -16963419 - L2 LINE L2 -672 2642 2610 192 77 0 0 chr11 133820136 133820162 -16963391 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 336 275 33 0 chr11 133820172 133820263 -16963290 - L2 LINE L2 -9 3263 3170 227 314 89 8 chr11 133820346 133820470 -16963083 - L2 LINE L2 -781 2533 2400 357 323 104 0 chr11 133820730 133820870 -16962683 - L2 LINE L2 -982 2332 2176 323 349 24 35 chr11 133820870 133821039 -16962514 + MIR3 SINE MIR 3 169 -39 190 261 0 0 chr11 133823047 133823093 -16960460 - L2 LINE L2 -219 3053 3008 2230 119 3 0 chr11 133823974 133824267 -16959286 + AluSx SINE Alu 1 294 -18 504 249 113 5 chr11 133824724 133824945 -16958608 - MER20B DNA MER1_type -6 777 533 334 262 49 8 chr11 133825023 133825145 -16958408 + MIR SINE MIR 66 192 -70 1011 280 113 42 chr11 133826042 133826172 -16957381 - L2 LINE L2 -1 3312 3193 447 19 0 0 chr11 133826172 133826224 -16957329 + (TG)n Simple_repeat Simple_repeat 2 53 0 1011 280 113 42 chr11 133826224 133826652 -16956901 - L2 LINE L2 -120 3193 2701 470 256 44 19 chr11 133826655 133826815 -16956738 - L1MA9 LINE L1 -30 6282 6119 305 276 0 0 chr11 133826827 133826903 -16956650 + Tigger3(Golem) DNA MER2_type 2 77 -2952 438 201 15 118 chr11 133826906 133827110 -16956443 - AluSq SINE Alu -11 302 120 326 288 33 46 chr11 133827140 133827380 -16956173 - AluSg SINE Alu -29 271 35 2252 88 47 0 chr11 133827480 133827777 -16955776 - AluSx SINE Alu -1 311 1 484 263 0 8 chr11 133827868 133827986 -16955567 + MIR3 SINE MIR 61 177 -31 301 294 28 9 chr11 133828901 133829010 -16954543 - MIR3 SINE MIR 0 208 98 425 306 53 0 chr11 133829191 133829341 -16954212 + MIR SINE MIR 29 186 -62 250 316 61 56 chr11 133829539 133829735 -16953818 + L2 LINE L2 2990 3186 -86 274 328 55 8 chr11 133831101 133831229 -16952324 + MIR SINE MIR 21 154 -108 198 203 0 68 chr11 133831278 133831337 -16952216 - MIR3 SINE MIR -144 64 10 306 253 44 0 chr11 133831569 133831660 -16951893 + L3 LINE CR1 1483 1577 0 255 225 11 56 chr11 133832123 133832212 -16951341 - LTR16C LTR ERVL -12 479 395 358 168 253 0 chr11 133832243 133832338 -16951215 - LTR16C LTR ERVL -87 404 286 2481 68 0 3 chr11 133832682 133833007 -16950546 + AluY SINE Alu 1 311 0 408 321 74 5 chr11 133833022 133833212 -16950341 - MIR SINE MIR -12 250 48 326 229 222 7 chr11 133833761 133833905 -16949648 + MIR3 SINE MIR 23 197 -11 397 264 18 9 chr11 133835161 133835271 -16948282 + L2 LINE L2 3198 3308 -5 1048 219 0 0 chr11 133835314 133835535 -16948018 - AluJ SINE Alu 0 330 110 1855 147 108 6 chr11 133835544 133835877 -16947676 + MSTA LTR MaLR 60 426 -2 8787 171 36 4 chr11 133835879 133837479 -16946074 + MSTA-int LTR MaLR 1 1651 0 2161 129 99 0 chr11 133837479 133837844 -16945709 + MSTA LTR MaLR 1 401 -27 286 79 0 0 chr11 133838443 133838481 -16945072 + MSTA LTR MaLR 387 424 -4 799 136 0 0 chr11 133838481 133838599 -16944954 - AluJ SINE Alu -184 118 1 27 0 0 0 chr11 133838648 133838675 -16944878 + AT_rich Low_complexity Low_complexity 1 27 0 747 279 56 13 chr11 133838771 133839004 -16944549 - MIR SINE MIR -9 253 11 375 303 97 0 chr11 133839594 133839749 -16943804 + MIR3 SINE MIR 31 200 -8 2355 110 0 0 chr11 133839855 133840165 -16943388 - AluSx SINE Alu -2 310 1 779 250 11 0 chr11 133840223 133840399 -16943154 - MIR SINE MIR -72 190 13 824 235 83 14 chr11 133840570 133840977 -16942576 - MLT1C LTR MaLR 0 467 1 601 266 62 69 chr11 133840979 133841109 -16942444 - L1MC4 LINE L1 -980 7062 6933 1724 122 63 28 chr11 133841109 133841396 -16942157 - AluJo SINE Alu -15 297 1 601 266 62 69 chr11 133841396 133841540 -16942013 - L1MC4 LINE L1 -1109 6933 6790 491 204 35 9 chr11 133841540 133841653 -16941900 + MER112 DNA MER1_type 139 254 -6 342 139 13 25 chr11 133841888 133841967 -16941586 + CT-rich Low_complexity Low_complexity 1 78 0 1982 100 38 0 chr11 133842965 133843226 -16940327 + AluSx SINE Alu 1 271 -41 206 225 0 0 chr11 133843251 133843291 -16940262 + GA-rich Low_complexity Low_complexity 3 42 0 336 244 119 25 chr11 133845308 133845468 -16938085 + MIR3 SINE MIR 17 191 -17 302 318 212 0 chr11 133845830 133846000 -16937553 + MIR SINE MIR 11 216 -46 228 287 123 25 chr11 133846842 133846964 -16936589 - L2 LINE L2 -1 3312 3179 591 259 31 0 chr11 133847190 133847352 -16936201 + MIR SINE MIR 48 214 -48 260 289 48 0 chr11 133848810 133848893 -16934660 + MIR3 SINE MIR 90 176 -32 448 307 127 0 chr11 133848948 133849137 -16934416 + MIR SINE MIR 47 259 -3 348 259 191 8 chr11 133849247 133849378 -16934175 - MER5A DNA MER1_type -31 158 4 289 328 104 8 chr11 133849863 133849997 -16933556 + MIR SINE MIR 16 162 -100 1494 203 47 6 chr11 133849997 133850318 -16933235 + MLT1A1 LTR MaLR 1 334 -31 256 244 97 51 chr11 133850894 133851044 -16932509 - MIR SINE MIR -42 166 21 559 286 78 26 chr11 133851928 133852159 -16931394 + MIR SINE MIR 8 250 -12 185 365 0 0 chr11 133852286 133852349 -16931204 - MIR SINE MIR -110 98 36 1283 245 111 18 chr11 133853755 133854196 -16929357 - L1ME3A LINE L1 -8 6162 5681 228 284 30 0 chr11 133854333 133854400 -16929153 + L2 LINE L2 3244 3312 -1 2342 99 0 0 chr11 133854523 133854817 -16928736 + AluSg SINE Alu 1 294 -16 261 216 34 23 chr11 133855033 133855121 -16928432 + GA-rich Low_complexity Low_complexity 2 90 0 2094 135 0 0 chr11 133855842 133856144 -16927409 - AluSx SINE Alu 0 302 1 814 191 64 97 chr11 133856153 133856420 -16927133 - MIR SINE MIR -2 260 3 2563 71 10 0 chr11 133856433 133856741 -16926812 - AluY SINE Alu 0 311 1 2076 109 14 3 chr11 133856895 133857189 -16926364 + AluSq SINE Alu 17 313 0 636 351 61 13 chr11 133857477 133857870 -16925683 + L2 LINE L2 2383 2794 -520 862 117 0 0 chr11 133858007 133858135 -16925418 - MER41B LTR ERV1 0 635 508 23 0 0 0 chr11 133858432 133858455 -16925098 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 133858478 133858499 -16925054 + AT_rich Low_complexity Low_complexity 1 21 0 2264 112 0 10 chr11 133858672 133858976 -16924577 - AluSx SINE Alu -11 301 1 3460 107 18 21 chr11 133859309 133859868 -16923685 - MER41B LTR ERV1 -77 558 2 202 288 106 0 chr11 133859872 133859938 -16923615 + L2 LINE L2 2988 3060 -253 273 335 39 71 chr11 133860420 133860602 -16922951 + MIR3 SINE MIR 18 193 -15 833 254 128 59 chr11 133861070 133861475 -16922078 - L2 LINE L2 -4 3309 2877 431 323 50 15 chr11 133861669 133861867 -16921686 + MIR SINE MIR 52 256 -6 265 257 29 0 chr11 133861889 133861959 -16921594 + MIR SINE MIR 89 160 -102 306 0 0 0 chr11 133862055 133862089 -16921464 + (TG)n Simple_repeat Simple_repeat 1 34 0 299 25 25 0 chr11 133862088 133862128 -16921425 + (GA)n Simple_repeat Simple_repeat 1 41 0 * 22 0 0 0 chr11 133862178 133862200 -16921353 + AT_rich Low_complexity Low_complexity 1 22 0 284 167 0 0 chr11 133862240 133862288 -16921265 + L2 LINE L2 3224 3271 -1 710 197 99 10 chr11 133862389 133862586 -16920967 - MIR SINE MIR -11 251 40 439 62 0 0 chr11 133862886 133862950 -16920603 + L1PA5 LINE L1 6091 6154 0 396 219 12 24 chr11 133863036 133863205 -16920348 + (TATG)n Simple_repeat Simple_repeat 1 167 0 491 326 86 20 chr11 133864239 133864484 -16919069 - MIR SINE MIR 0 262 2 196 273 18 82 chr11 133864652 133864762 -16918791 - MIR SINE MIR -2 260 158 474 279 66 30 chr11 133864905 133865102 -16918451 - MIR SINE MIR -56 206 3 293 384 63 10 chr11 133865418 133865624 -16917929 + L2 LINE L2 2693 2909 -405 222 312 32 0 chr11 133866719 133866812 -16916741 - MIR SINE MIR -111 151 56 270 56 0 0 chr11 133866851 133866887 -16916666 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 339 339 120 53 chr11 133868437 133868794 -16914759 + L2 LINE L2 2887 3267 -5 391 282 0 30 chr11 133868905 133869036 -16914517 - MIR SINE MIR -56 206 80 244 265 108 20 chr11 133869330 133869432 -16914121 - MIR SINE MIR -111 151 41 451 271 104 52 chr11 133870058 133870250 -16913303 + MIR SINE MIR 60 261 -1 435 208 10 20 chr11 133870263 133870364 -16913189 - MIR3 SINE MIR -3 205 106 189 94 0 0 chr11 133871125 133871157 -16912396 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 332 274 95 0 chr11 133871161 133871256 -16912297 - L2 LINE L2 -16 3297 3194 420 271 39 8 chr11 133871714 133871843 -16911710 - L2 LINE L2 -1 3271 3139 459 274 68 14 chr11 133872248 133872394 -16911159 + MIR SINE MIR 45 198 -64 2092 117 3 0 chr11 133872395 133872706 -16910847 - AluSx SINE Alu 0 312 1 562 279 112 0 chr11 133872714 133872893 -16910660 - MIR SINE MIR -15 247 49 296 212 15 15 chr11 133873108 133873174 -16910379 - L2 LINE L2 0 3313 3248 707 314 96 38 chr11 133873436 133874038 -16909515 - L2 LINE L2 -465 2849 2213 332 299 38 3 chr11 133874287 133874412 -16909141 + MIR SINE MIR 12 139 -69 2243 95 25 0 chr11 133874622 133874906 -16908647 + AluSx SINE Alu 1 291 -21 500 229 34 51 chr11 133875176 133875351 -16908202 - L2 LINE L2 0 3313 3142 367 241 139 0 chr11 133875524 133875632 -16907921 - L2 LINE L2 -1 3312 3190 2467 217 64 92 chr11 133875862 133876752 -16906801 - L1ME3A LINE L1 -6 6164 5300 333 0 0 0 chr11 133876771 133876808 -16906745 + (T)n Simple_repeat Simple_repeat 1 37 0 870 303 138 24 chr11 133876910 133877739 -16905814 - L2 LINE L2 -978 2336 1414 4163 141 89 58 chr11 133877740 133878028 -16905525 + MER21A LTR ERV1 14 291 -640 2005 143 0 0 chr11 133878028 133878307 -16905246 + AluSx SINE Alu 1 279 -33 279 0 0 0 chr11 133878308 133878339 -16905214 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4163 141 89 58 chr11 133878339 133878935 -16904618 + MER21A LTR ERV1 290 928 -3 554 291 14 36 chr11 133879079 133879247 -16904306 - L2 LINE L2 -2062 1252 1089 2460 91 0 0 chr11 133879247 133879556 -16903997 + AluSx SINE Alu 1 309 -3 554 291 14 36 chr11 133879556 133879607 -16903946 - L2 LINE L2 -2225 1089 1038 264 332 168 13 chr11 133879651 133880031 -16903522 - L2 LINE L2 -1062 2252 1814 240 188 0 0 chr11 133880579 133880627 -16902926 + (CCCA)n Simple_repeat Simple_repeat 2 49 0 2463 96 0 0 chr11 133881076 133881388 -16902165 - AluSx SINE Alu 0 312 1 488 227 259 5 chr11 133882754 133882974 -16900579 + L2 LINE L2 2453 2728 -586 2719 32 0 7 chr11 133884264 133884574 -16898979 + AluY SINE Alu 1 308 -3 400 202 32 11 chr11 133884709 133884803 -16898750 + MER20 DNA MER1_type 123 218 -1 245 275 24 174 chr11 133885228 133885366 -16898187 - MER5B DNA MER1_type -2 176 78 1494 176 109 0 chr11 133885366 133885622 -16897931 - AluJo SINE Alu -27 285 2 245 275 24 174 chr11 133885622 133885690 -16897863 - MER5B DNA MER1_type -100 78 1 319 222 37 0 chr11 133885883 133885964 -16897589 + MIR SINE MIR 106 189 -73 189 383 56 9 chr11 133886098 133886205 -16897348 - L2 LINE L2 -32 3240 3129 240 276 0 0 chr11 133887056 133887114 -16896439 - L2 LINE L2 -11 3302 3245 245 296 0 12 chr11 133887558 133887639 -16895914 - L2 LINE L2 -639 2675 2596 321 277 71 9 chr11 133887719 133887831 -16895722 - LTR16C LTR ERVL -3 488 370 551 341 77 26 chr11 133887959 133888566 -16894987 - L2 LINE L2 -829 2485 1848 195 333 53 8 chr11 133888579 133888711 -16894842 - L2 LINE L2 -570 2744 2607 478 195 0 0 chr11 133888744 133888826 -16894727 + FLAM SINE Alu 52 133 -10 493 210 0 72 chr11 133889767 133889905 -16893648 - FLAM_A SINE Alu -5 128 1 234 0 0 0 chr11 133890005 133890031 -16893522 + (T)n Simple_repeat Simple_repeat 1 26 0 231 36 0 0 chr11 133890186 133890214 -16893339 + (A)n Simple_repeat Simple_repeat 1 28 0 749 254 99 0 chr11 133890240 133890441 -16893112 + MIR SINE MIR 36 256 -6 2291 79 0 10 chr11 133890474 133890758 -16892795 + AluSc SINE Alu 1 282 -22 186 71 0 0 chr11 133890758 133890786 -16892767 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2213 96 10 10 chr11 133892227 133892520 -16891033 - AluSx SINE Alu -19 293 1 791 224 102 5 chr11 133892764 133892984 -16890569 + MIR SINE MIR 19 255 -7 498 281 168 15 chr11 133894265 133894468 -16889085 - MIR SINE MIR -24 238 5 312 281 196 53 chr11 133894494 133894836 -16888717 - L2 LINE L2 -75 3197 2807 225 228 44 66 chr11 133894915 133895051 -16888502 - L2 LINE L2 -719 2595 2463 294 325 8 0 chr11 133897071 133897188 -16886365 - MIR SINE MIR -63 145 28 197 248 124 66 chr11 133897663 133897784 -16885769 - MIR SINE MIR -6 256 129 366 276 19 9 chr11 133897955 133898060 -16885493 + MIR3 SINE MIR 85 190 -18 342 354 61 25 chr11 133899076 133899232 -16884321 + L2 LINE L2 2611 2783 -531 2287 67 3 24 chr11 133899232 133899529 -16884024 - AluSc SINE Alu -18 291 1 342 354 61 25 chr11 133899529 133899649 -16883904 + L2 LINE L2 2783 2897 -417 2201 92 31 3 chr11 133900085 133900378 -16883175 + AluSp SINE Alu 1 301 -12 352 281 0 104 chr11 133901633 133901797 -16881756 - MIR3 SINE MIR -24 184 38 200 276 253 0 chr11 133902010 133902097 -16881456 + L3 LINE CR1 507 615 -962 1861 91 3 59 chr11 133902099 133902386 -16881167 - AluSc SINE Alu 0 309 39 216 0 0 0 chr11 133902386 133902410 -16881143 + (T)n Simple_repeat Simple_repeat 1 24 0 2455 79 0 25 chr11 133953607 133953949 -16829604 - AluSc SINE Alu 0 334 1 247 256 51 51 chr11 133954226 133954363 -16829190 - MLT1J LTR MaLR -339 172 36 223 384 199 0 chr11 133955905 133956051 -16827502 + L2 LINE L2 3097 3271 -1 194 308 113 42 chr11 133956238 133956440 -16827113 - L2 LINE L2 -272 3000 2791 191 310 186 38 chr11 133956451 133956870 -16826683 - L2 LINE L2 -629 2685 2205 2135 189 52 10 chr11 133957010 133957671 -16825882 - L1MC/D LINE L1 -743 5403 4831 246 264 50 50 chr11 133957883 133958004 -16825549 - L2 LINE L2 -197 3075 2955 267 31 0 0 chr11 133958016 133958048 -16825505 + (TG)n Simple_repeat Simple_repeat 2 33 0 460 276 172 79 chr11 133958079 133959127 -16824426 - L2 LINE L2 -458 2856 1712 1753 202 41 14 chr11 133960182 133960549 -16823004 + MLT1B LTR MaLR 3 379 -11 303 290 149 104 chr11 133961299 133961520 -16822033 - L2 LINE L2 0 3272 3042 1463 173 109 13 chr11 133961557 133961796 -16821757 + MER2 DNA MER2_type 1 278 -66 2264 85 0 19 chr11 133961796 133962113 -16821440 - AluY SINE Alu 0 311 1 1463 173 109 13 chr11 133962113 133962186 -16821367 + MER2 DNA MER2_type 278 343 -1 883 222 29 14 chr11 133963733 133963940 -16819613 - MLT1A2 LTR MaLR -10 364 155 1890 116 36 20 chr11 133964138 133964441 -16819112 - AluSq SINE Alu 0 313 6 202 27 0 54 chr11 133964443 133964480 -16819073 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1807 108 7 18 chr11 133964480 133964757 -16818796 - AluSx SINE Alu -29 283 10 600 211 84 7 chr11 133964761 133964903 -16818650 - MLT1A2 LTR MaLR -219 171 19 471 266 69 23 chr11 133965503 133965676 -16817877 + MIR SINE MIR 15 195 -67 2008 130 0 19 chr11 133965822 133966138 -16817415 - AluSp SINE Alu -3 310 1 2244 152 64 56 chr11 133966913 133967218 -16816335 - L1MB8 LINE L1 -5 6173 5861 2002 117 7 3 chr11 133967218 133967509 -16816044 - AluSx SINE Alu -20 292 1 2244 152 64 56 chr11 133967509 133967718 -16815835 - L1MB8 LINE L1 -317 5861 5655 266 279 178 31 chr11 133967751 133967880 -16815673 - MIR SINE MIR -4 258 111 401 273 48 30 chr11 133968039 133968204 -16815349 - MIR SINE MIR -57 205 38 264 137 0 0 chr11 133969065 133969116 -16814437 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 312 216 37 187 chr11 133969232 133969417 -16814136 + MIR SINE MIR 17 151 -111 2182 112 0 0 chr11 133969417 133969721 -16813832 - AluSx SINE Alu -8 304 1 312 216 37 187 chr11 133969721 133969803 -16813750 + MIR SINE MIR 151 244 -18 406 252 245 5 chr11 133969806 133969988 -16813565 - MIR SINE MIR -11 251 27 335 296 16 56 chr11 133970565 133970690 -16812863 - L2 LINE L2 -1 3312 3193 376 257 106 9 chr11 133970991 133971104 -16812449 - L2 LINE L2 0 3313 3190 732 297 11 0 chr11 133971890 133972065 -16811488 + MIR SINE MIR 4 180 -82 393 143 0 0 chr11 133973779 133973835 -16809718 - MIR3 SINE MIR -38 170 115 251 258 152 37 chr11 133973915 133974159 -16809394 - L2 LINE L2 -161 3111 2840 515 221 168 13 chr11 133974173 133974322 -16809231 + MIR SINE MIR 21 192 -70 180 263 275 0 chr11 133974360 133974440 -16809113 + MIR SINE MIR 149 250 -12 291 279 208 52 chr11 133975554 133975708 -16807845 - L2 LINE L2 -1 3271 3094 1908 147 3 3 chr11 133975767 133976073 -16807480 + AluJo SINE Alu 1 306 -6 456 213 98 33 chr11 133976163 133976285 -16807268 - MER46C DNA MER2_type -207 131 2 203 277 21 32 chr11 133976438 133976532 -16807021 - L2 LINE L2 -212 3060 2968 295 155 17 0 chr11 133976541 133976599 -16806954 - Charlie4a DNA MER1_type -37 471 413 1738 169 82 23 chr11 133976645 133977036 -16806517 - Charlie4a DNA MER1_type -94 414 1 470 281 60 24 chr11 133977411 133977578 -16805975 + MIR SINE MIR 79 251 -11 309 283 39 22 chr11 133977660 133977840 -16805713 - L1ME4a LINE L1 -213 5908 5726 276 337 43 11 chr11 133977872 133977964 -16805589 - L2 LINE L2 -9 3304 3210 692 270 11 17 chr11 133978256 133978430 -16805123 + MIR SINE MIR 3 175 -87 824 224 99 5 chr11 133978506 133978698 -16804855 - MIR SINE MIR -34 228 19 464 279 15 47 chr11 133979161 133979373 -16804180 + MIR3 SINE MIR 8 214 -48 356 278 22 83 chr11 133980055 133980235 -16803318 - L2 LINE L2 -3 3310 3142 2035 91 21 17 chr11 133980305 133980592 -16802961 + AluSx SINE Alu 5 292 -20 211 298 20 40 chr11 133980791 133980942 -16802611 + CT-rich Low_complexity Low_complexity 2 149 0 293 299 118 24 chr11 133982102 133982229 -16801324 - MIR3 SINE MIR -53 155 17 531 327 55 52 chr11 133982653 133983256 -16800297 - L2 LINE L2 0 3272 2649 209 339 8 63 chr11 133983256 133983383 -16800170 - L2 LINE L2 -958 2356 2237 997 141 12 6 chr11 133984520 133984683 -16798870 - AluSg/x SINE Alu -32 280 117 217 282 52 5 chr11 133985781 133985871 -16797682 + MIR SINE MIR 76 165 -60 363 297 52 32 chr11 133986519 133986674 -16796879 + L3b LINE CR1 1224 1381 -202 213 394 0 0 chr11 133987112 133987183 -16796370 + L3b LINE CR1 1380 1450 -133 453 289 61 28 chr11 133987576 133987756 -16795797 + MIR SINE MIR 15 200 -62 380 55 18 0 chr11 133989165 133989220 -16794333 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 2548 166 88 8 chr11 133989593 133990081 -16793472 - MER74A LTR ERVL -30 528 2 517 296 150 0 chr11 133990107 133990320 -16793233 - MIR SINE MIR -10 252 8 21 0 0 0 chr11 133990393 133990414 -16793139 + AT_rich Low_complexity Low_complexity 1 21 0 1996 86 45 24 chr11 133990534 133990825 -16792728 + AluSx SINE Alu 1 297 -15 285 298 0 9 chr11 133991363 133991477 -16792076 - HAL1b LINE L1 -710 638 526 219 271 0 0 chr11 133991647 133991695 -16791858 + MIR SINE MIR 58 105 -103 294 266 11 43 chr11 133991720 133991814 -16791739 - MIR SINE MIR -75 133 43 324 218 24 40 chr11 133991994 133992014 -16791539 - L1MA10 LINE L1 0 6334 6315 1568 202 44 0 chr11 133992014 133992331 -16791222 - L1ME1 LINE L1 -8 6158 5828 956 181 0 11 chr11 133992335 133992512 -16791041 - FRAM SINE Alu -1 175 1 618 229 0 0 chr11 133992515 133992637 -16790916 - L1ME1 LINE L1 -347 5819 5698 2609 224 42 28 chr11 133992656 133993396 -16790157 + MER20B DNA MER1_type 34 783 0 2437 173 36 5 chr11 133993536 133993982 -16789571 - LOR1b LTR ERV1 0 461 2 1564 282 99 45 chr11 133994199 133994988 -16788565 - L2 LINE L2 -251 3062 2222 309 281 81 75 chr11 133995905 133996065 -16787488 + L1MDa LINE L1 1239 1399 -5141 695 324 45 35 chr11 133996073 133996644 -16786909 + HAL1b LINE L1 62 638 -710 16179 137 33 18 chr11 133996815 133998276 -16785277 - L1MA2 LINE L1 0 7723 6284 1701 180 0 10 chr11 133998276 133998576 -16784977 + AluJb SINE Alu 5 301 -11 16179 137 33 18 chr11 133998576 134000314 -16783239 - L1MA2 LINE L1 -1439 6284 4572 1920 123 7 10 chr11 134000314 134000630 -16782923 - AluSg SINE Alu 0 315 1 16179 137 33 18 chr11 134000630 134001939 -16781614 - L1MA2 LINE L1 -3151 4572 3283 2264 100 0 0 chr11 134001939 134002238 -16781315 - AluSg SINE Alu -11 299 1 16179 137 33 18 chr11 134002238 134004709 -16778844 - L1MA2 LINE L1 -4440 3283 533 198 0 0 0 chr11 134004970 134004992 -16778561 + (TC)n Simple_repeat Simple_repeat 1 22 0 1784 208 147 78 chr11 134005010 134005847 -16777706 + L1MC5 LINE L1 6633 7527 -434 518 255 38 52 chr11 134005937 134006149 -16777404 + L1ME3A LINE L1 5962 6170 0 881 251 114 52 chr11 134006165 134006612 -16776941 - L2 LINE L2 -1082 2232 1758 383 296 74 0 chr11 134007420 134007528 -16776025 + MIR SINE MIR 117 232 -30 522 239 166 31 chr11 134009313 134009476 -16774077 - MIR SINE MIR -17 245 61 204 40 0 0 chr11 134009484 134009509 -16774044 + (T)n Simple_repeat Simple_repeat 1 25 0 2293 79 7 7 chr11 134009664 134009969 -16773584 - AluSc SINE Alu -4 305 1 258 389 69 0 chr11 134010258 134010389 -16773164 - L2 LINE L2 -86 3186 3047 998 80 90 37 chr11 134010410 134010457 -16773096 + L1PA14 LINE L1 5271 5314 -847 2145 114 0 0 chr11 134010457 134010755 -16772798 + AluSx SINE Alu 3 300 -12 998 80 90 37 chr11 134010755 134010895 -16772658 + L1PA14 LINE L1 5314 5468 -693 356 115 0 0 chr11 134010895 134010972 -16772581 - Alu SINE Alu 0 312 236 4985 98 1 20 chr11 134010974 134011342 -16772211 + L1PA14 LINE L1 5461 5811 -350 2231 96 3 0 chr11 134011342 134011644 -16771909 + AluSg SINE Alu 1 303 -7 4985 98 1 20 chr11 134011644 134011989 -16771564 + L1PA14 LINE L1 5811 6161 0 225 132 0 0 chr11 134012026 134012069 -16771484 + MIR SINE MIR 42 83 -179 352 302 31 0 chr11 134012153 134012249 -16771304 + MIR SINE MIR 66 164 -98 414 256 184 8 chr11 134013783 134014017 -16769536 - L1ME4a LINE L1 -249 5872 5598 280 287 198 12 chr11 134014365 134014532 -16769021 + MIR SINE MIR 58 255 -7 223 329 0 0 chr11 134014659 134014729 -16768824 + MIR SINE MIR 79 148 -60 213 146 0 24 chr11 134014803 134014844 -16768709 + (TAGG)n Simple_repeat Simple_repeat 2 41 0 245 291 13 25 chr11 134015295 134015374 -16768179 + MIR SINE MIR 43 120 -88 690 242 38 0 chr11 134018402 134018559 -16764994 - MIR3 SINE MIR -17 191 29 1923 127 0 35 chr11 134018742 134019056 -16764497 - AluSx SINE Alu -9 303 1 427 293 135 24 chr11 134019148 134019356 -16764197 - MIR SINE MIR -1 261 31 22 0 0 0 chr11 134019821 134019843 -16763710 + AT_rich Low_complexity Low_complexity 1 22 0 465 19 0 0 chr11 134021685 134021739 -16761814 + (TG)n Simple_repeat Simple_repeat 1 54 0 340 266 73 20 chr11 134021789 134021898 -16761655 + MIR SINE MIR 39 150 -66 3307 174 17 30 chr11 134022171 134022430 -16761123 - L1MB7 LINE L1 0 6184 5923 1798 126 65 0 chr11 134022430 134022707 -16760846 - AluSg SINE Alu -15 295 1 3307 174 17 30 chr11 134022707 134023136 -16760417 - L1MB7 LINE L1 -261 5923 5505 1151 131 31 0 chr11 134023137 134023401 -16760152 - L1MB7 LINE L1 -742 5442 5171 310 290 79 61 chr11 134023507 134023721 -16759832 - L2 LINE L2 -1 3271 3054 1582 139 24 44 chr11 134023729 134024023 -16759530 + AluJb SINE Alu 10 297 -15 275 0 0 28 chr11 134024031 134024067 -16759486 + (TAA)n Simple_repeat Simple_repeat 3 37 0 512 272 51 25 chr11 134024242 134024400 -16759153 - MIR SINE MIR -72 190 29 514 262 44 33 chr11 134025702 134025912 -16757641 + MIR SINE MIR 34 246 -16 288 155 0 52 chr11 134026836 134026894 -16756659 - MER103 DNA DNA -10 156 102 677 260 29 100 chr11 134027270 134027620 -16755933 - L2 LINE L2 -20 3252 2928 404 289 46 66 chr11 134027621 134027818 -16755735 - MLT1L LTR MaLR -3 612 420 238 274 48 24 chr11 134027968 134028052 -16755501 - MLT1K LTR MaLR -346 242 157 186 103 0 0 chr11 134028057 134028086 -16755467 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 295 125 0 0 chr11 134028087 134028127 -16755426 - MLT1L LTR MaLR -429 186 147 531 176 0 0 chr11 134028127 134028212 -16755341 - MER58B DNA MER1_type 0 341 257 21 0 0 0 chr11 134028227 134028248 -16755305 + AT_rich Low_complexity Low_complexity 1 21 0 1460 210 68 79 chr11 134028248 134028752 -16754801 - L1MA9 LINE L1 -38 6274 5777 383 279 0 12 chr11 134028760 134028846 -16754707 + L1MC4 LINE L1 6609 6693 -1349 32813 105 9 57 chr11 134028846 134035305 -16748248 - L1PA7 LINE L1 -2 6152 12 9457 180 23 21 chr11 134035317 134037775 -16745778 - L1MA9 LINE L1 -527 5785 3320 1040 174 46 107 chr11 134037781 134038062 -16745491 - MER58B DNA MER1_type -77 264 1 1589 198 86 26 chr11 134039050 134039389 -16744164 + MLT1A1 LTR MaLR 1 359 -6 3851 182 14 22 chr11 134039397 134040133 -16743420 + MLT1A1-int LTR MaLR 2 731 -1004 743 310 98 43 chr11 134040188 134040536 -16743017 + MLT1A1-int LTR MaLR 975 1341 -394 572 265 50 28 chr11 134040583 134040613 -16742940 - MLT1A1 LTR MaLR 0 365 337 197 33 33 0 chr11 134040613 134040643 -16742910 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 572 265 50 28 chr11 134040643 134040793 -16742760 - MLT1A1 LTR MaLR -28 337 181 203 246 0 82 chr11 134040804 134040865 -16742688 - L2 LINE L2 -20 3293 3238 209 232 0 72 chr11 134041089 134041158 -16742395 + GA-rich Low_complexity Low_complexity 1 64 0 223 312 21 32 chr11 134041281 134041374 -16742179 - L2 LINE L2 -3 3269 3178 533 320 95 9 chr11 134041415 134041646 -16741907 - MIR SINE MIR 0 262 12 2311 251 60 29 chr11 134041719 134042475 -16741078 + L1MEd LINE L1 1 779 -5340 191 282 114 46 chr11 134042553 134042684 -16740869 - L2 LINE L2 -183 3089 2950 1966 143 69 37 chr11 134042687 134042722 -16740831 - MLT2D LTR ERVL 0 414 382 180 77 0 0 chr11 134042722 134042748 -16740805 + (TG)n Simple_repeat Simple_repeat 1 26 0 1966 143 69 37 chr11 134042748 134043089 -16740464 - MLT2D LTR ERVL -32 382 26 361 217 85 19 chr11 134043758 134043864 -16739689 + MIR3 SINE MIR 11 123 -85 180 320 67 0 chr11 134044144 134044219 -16739334 - MIR SINE MIR -129 133 54 1546 213 98 40 chr11 134044940 134045438 -16738115 - MLT1F LTR MaLR -10 532 6 235 289 106 19 chr11 134045563 134045667 -16737886 + L2 LINE L2 2772 2884 -430 702 301 45 39 chr11 134045853 134046052 -16737501 - L2 LINE L2 0 3313 3110 2226 111 0 0 chr11 134046052 134046358 -16737195 + AluSx SINE Alu 1 306 -6 702 301 45 39 chr11 134046358 134046513 -16737040 - L2 LINE L2 -203 3110 2957 231 314 57 73 chr11 134046520 134046644 -16736909 + L2 LINE L2 3115 3236 -36 198 0 0 0 chr11 134048045 134048067 -16735486 + (TAA)n Simple_repeat Simple_repeat 1 22 0 209 293 53 13 chr11 134048271 134048346 -16735207 + MIR SINE MIR 19 96 -112 266 254 36 64 chr11 134048413 134048523 -16735030 + MIR SINE MIR 106 212 -50 3526 117 80 31 chr11 134048551 134049113 -16734440 - L1MB3 LINE L1 -2 6181 5648 219 103 0 0 chr11 134049113 134049152 -16734401 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2264 69 0 3 chr11 134049154 134049442 -16734111 - AluY SINE Alu -24 287 1 3526 117 80 31 chr11 134049442 134049517 -16734036 - L1MB3 LINE L1 -535 5648 5510 234 265 0 0 chr11 134049517 134049585 -16733968 + T-rich Low_complexity Low_complexity 1 68 0 288 95 0 0 chr11 134049588 134049630 -16733923 - L1MB3 LINE L1 -685 5486 5445 218 208 0 57 chr11 134049694 134049747 -16733806 + MER5A DNA MER1_type 95 144 -45 1676 182 0 3 chr11 134049755 134050052 -16733501 - AluJo SINE Alu -16 296 1 298 167 0 0 chr11 134050055 134050103 -16733450 + MER5A DNA MER1_type 130 177 -12 429 297 161 29 chr11 134050190 134050682 -16732871 + L2 LINE L2 2732 3291 -22 2486 53 0 0 chr11 134050686 134050985 -16732568 - AluY SINE Alu -12 299 1 547 137 34 94 chr11 134051183 134051300 -16732253 + MER20 DNA MER1_type 1 110 -109 513 229 83 73 chr11 134051296 134051488 -16732065 - MLT1A1 LTR MaLR -170 195 2 * 344 207 49 0 chr11 134051489 134051571 -16731982 + MER20 DNA MER1_type 119 204 -15 199 211 14 14 chr11 134051782 134051853 -16731700 + CT-rich Low_complexity Low_complexity 2 72 0 249 275 28 106 chr11 134053208 134053350 -16730203 + L2 LINE L2 3138 3268 -4 1019 193 72 59 chr11 134055260 134055436 -16728117 + MER33 DNA MER1_type 1 173 -2412 1657 167 6 41 chr11 134055436 134055753 -16727800 + AluJb SINE Alu 1 306 -6 1019 193 72 59 chr11 134055753 134055811 -16727742 + MER33 DNA MER1_type 173 229 -2356 2057 99 7 0 chr11 134055811 134056163 -16727390 - AluSx SINE Alu 0 354 1 1019 193 72 59 chr11 134056163 134056232 -16727321 + MER33 DNA MER1_type 229 310 -14 342 67 0 0 chr11 134056236 134056281 -16727272 + (T)n Simple_repeat Simple_repeat 1 45 0 447 137 0 0 chr11 134056392 134056465 -16727088 + (A)n Simple_repeat Simple_repeat 1 73 0 258 281 70 65 chr11 134056477 134056676 -16726877 - L2 LINE L2 0 3272 3073 330 305 144 8 chr11 134057617 134057735 -16725818 + MER91A DNA MER1_type 2 135 -61 527 258 116 77 chr11 134057994 134058235 -16725318 - MIR SINE MIR 0 262 13 245 353 126 28 chr11 134058237 134058571 -16724982 - L2 LINE L2 -225 3047 2747 921 189 22 0 chr11 134058571 134058756 -16724797 + MER5A DNA MER1_type 1 189 0 245 353 126 28 chr11 134058756 134059191 -16724362 - L2 LINE L2 -525 2747 2205 531 267 89 30 chr11 134059233 134059435 -16724118 + MIR SINE MIR 39 252 -10 627 306 55 55 chr11 134060071 134060489 -16723064 + L2 LINE L2 2871 3288 -25 694 286 70 0 chr11 134061273 134061486 -16722067 - MIR SINE MIR -26 236 9 187 243 0 0 chr11 134062499 134062536 -16721017 - L2 LINE L2 -11 3261 3225 216 0 0 0 chr11 134062552 134062576 -16720977 + (T)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr11 134062806 134062826 -16720727 + (A)n Simple_repeat Simple_repeat 1 20 0 256 119 0 0 chr11 134062826 134062868 -16720685 + L1MB1 LINE L1 6126 6167 -1 439 198 50 0 chr11 134062963 134063064 -16720489 - MIR SINE MIR -78 184 79 376 226 14 14 chr11 134063146 134063246 -16720307 - MIR SINE MIR -62 146 55 183 42 0 0 chr11 134063256 134063280 -16720273 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 2181 124 7 13 chr11 134064337 134064644 -16718909 + AluSx SINE Alu 1 305 -7 759 296 44 28 chr11 134065594 134065982 -16717571 - L2 LINE L2 0 3313 2920 399 293 53 57 chr11 134066523 134066786 -16716767 + L2 LINE L2 2916 3177 -95 224 241 19 0 chr11 134070768 134070822 -16712731 + (TTCA)n Simple_repeat Simple_repeat 2 56 0 464 278 68 12 chr11 134071582 134071744 -16711809 - MIR SINE MIR -44 218 48 434 287 90 0 chr11 134072714 134072836 -16710717 - L2 LINE L2 -3 3269 3137 570 274 11 23 chr11 134073274 134073449 -16710104 - MIR3 SINE MIR -13 195 23 208 368 0 21 chr11 134073452 134073547 -16710006 + MIR SINE MIR 21 113 -149 297 51 0 0 chr11 134073611 134073650 -16709903 + (CA)n Simple_repeat Simple_repeat 2 40 0 249 261 171 51 chr11 134074799 134074975 -16708578 + L3b LINE CR1 1303 1499 -84 1606 196 75 13 chr11 134075062 134075434 -16708119 + MSTD LTR MaLR 1 395 -1 223 311 20 74 chr11 134076001 134076149 -16707404 - L2 LINE L2 -187 3085 2946 2623 36 3 3 chr11 134076426 134076728 -16706825 - AluY SINE Alu -9 302 1 2440 80 0 19 chr11 134076750 134077064 -16706489 + AluSx SINE Alu 1 308 -4 506 304 84 16 chr11 134077281 134077531 -16706022 - L2 LINE L2 -782 2532 2266 265 283 73 47 chr11 134077729 134077920 -16705633 - L2 LINE L2 -1398 1916 1721 443 225 133 40 chr11 134078229 134078402 -16705151 - MIR SINE MIR -49 213 25 209 280 20 0 chr11 134078554 134078604 -16704949 + MIR3 SINE MIR 128 178 -30 21 0 0 0 chr11 134079051 134079072 -16704481 + AT_rich Low_complexity Low_complexity 1 21 0 454 258 239 0 chr11 134079484 134079647 -16703906 - MIR SINE MIR 0 262 61 242 365 47 0 chr11 134079968 134080138 -16703415 - L2 LINE L2 -576 2738 2561 491 288 60 16 chr11 134080965 134081149 -16702404 - MIR SINE MIR -35 227 36 203 329 51 13 chr11 134081639 134081718 -16701835 + L2 LINE L2 3153 3234 -38 2175 125 9 0 chr11 134081749 134082085 -16701468 + MER46B DNA MER2_type 11 224 -12 2608 73 0 3 chr11 134082160 134082517 -16701036 + AluSp SINE Alu 1 356 0 2621 49 0 3 chr11 134082637 134082943 -16700610 - AluY SINE Alu -6 305 1 568 257 62 0 chr11 134082945 134083104 -16700449 - MIR SINE MIR -65 197 35 544 217 32 104 chr11 134083664 134083885 -16699668 - L1ME3A LINE L1 -12 6158 5954 2386 105 3 10 chr11 134084920 134085234 -16698319 + AluSx SINE Alu 1 312 0 26 0 0 0 chr11 134085550 134085576 -16697977 + AT_rich Low_complexity Low_complexity 1 26 0 1002 215 0 15 chr11 134085602 134085807 -16697746 - MIR SINE MIR 0 262 61 749 329 80 22 chr11 134085939 134086350 -16697203 - L2 LINE L2 -5 3308 2874 2265 126 7 0 chr11 134086522 134086832 -16696721 + AluSx SINE Alu 1 312 0 530 213 0 8 chr11 134086840 134086962 -16696591 + Charlie4a DNA MER1_type 61 181 -327 360 246 256 5 chr11 134086966 134087161 -16696392 + Charlie4a DNA MER1_type 259 502 -6 2302 96 3 7 chr11 134087165 134087467 -16696086 + AluSx SINE Alu 1 301 -11 186 400 0 0 chr11 134087484 134087559 -16695994 - L2 LINE L2 -583 2731 2657 501 196 126 21 chr11 134087597 134087740 -16695813 - MIR SINE MIR -73 189 32 453 158 0 0 chr11 134088197 134088279 -16695274 + (TG)n Simple_repeat Simple_repeat 2 83 0 307 349 9 0 chr11 134089380 134089486 -16694067 + MIR SINE MIR 50 156 -106 753 230 120 5 chr11 134089592 134089792 -16693761 - MIR SINE MIR 0 262 40 660 246 65 10 chr11 134090216 134090415 -16693138 - MIR SINE MIR -16 246 37 254 299 75 35 chr11 134090531 134090705 -16692848 - L2 LINE L2 -1351 1963 1783 1233 183 42 4 chr11 134090753 134090994 -16692559 + MIR SINE MIR 9 258 -4 546 335 24 63 chr11 134091073 134091536 -16692017 + L2 LINE L2 2805 3249 -23 646 271 57 24 chr11 134092600 134092810 -16690743 - MIR SINE MIR -3 259 43 345 258 61 22 chr11 134092900 134093074 -16690479 - MIR SINE MIR -46 216 34 2688 45 0 3 chr11 134093155 134093463 -16690090 + AluY SINE Alu 1 307 -4 193 306 42 14 chr11 134094743 134094815 -16688738 + L2 LINE L2 2702 2775 -539 191 232 0 158 chr11 134096170 134096265 -16687288 + MIR SINE MIR 112 191 -71 203 288 17 0 chr11 134096560 134096619 -16686934 + C-rich Low_complexity Low_complexity 4 63 0 2316 118 3 0 chr11 134097399 134097703 -16685850 - AluSq SINE Alu -8 305 1 2953 206 48 6 chr11 134098079 134098706 -16684847 - MER82 DNA MER2_type 0 653 1 598 285 43 14 chr11 134098971 134099178 -16684375 - L3 LINE CR1 -88 1489 1277 307 232 0 14 chr11 134099582 134099651 -16683902 - L2 LINE L2 -4 3309 3242 362 333 150 11 chr11 134099662 134099929 -16683624 - L2 LINE L2 0 3313 3010 787 267 62 5 chr11 134100303 134100513 -16683040 + MIR SINE MIR 40 261 -1 285 244 11 33 chr11 134100569 134100659 -16682894 - L2 LINE L2 -1 3271 3184 709 211 58 43 chr11 134100708 134100916 -16682637 + MER112 DNA MER1_type 44 254 -6 288 0 0 0 chr11 134101608 134101640 -16681913 + (T)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr11 134101883 134101904 -16681649 + (A)n Simple_repeat Simple_repeat 1 21 0 2139 138 6 0 chr11 134101913 134102224 -16681329 - AluSq SINE Alu 0 313 1 242 261 92 0 chr11 134102340 134102405 -16681148 - MIR SINE MIR -107 101 31 306 280 74 51 chr11 134102494 134102665 -16680888 - MIR SINE MIR -57 205 35 304 303 0 0 chr11 134102876 134102952 -16680601 + MIR SINE MIR 47 122 -140 195 42 0 0 chr11 134102954 134102978 -16680575 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 196 339 118 31 chr11 134103030 134103157 -16680396 + MIR SINE MIR 115 252 -10 476 300 19 43 chr11 134103682 134103892 -16679661 + MIR SINE MIR 1 205 -57 676 298 64 71 chr11 134103903 134104188 -16679365 - L2 LINE L2 -3 3269 2984 661 264 77 5 chr11 134104188 134104396 -16679157 - MER58A DNA MER1_type 0 224 2 676 298 64 71 chr11 134104396 134104818 -16678735 - L2 LINE L2 -288 2984 2556 214 299 58 11 chr11 134104814 134104901 -16678652 - MIR SINE MIR -85 123 33 * 273 352 19 0 chr11 134105783 134105891 -16677662 + MIR SINE MIR 46 155 -107 1024 222 0 10 chr11 134105950 134106153 -16677400 - MER63A DNA MER1_type 0 210 10 310 189 0 0 chr11 134106246 134106299 -16677254 - MER5A DNA MER1_type -74 115 63 269 130 278 0 chr11 134106346 134106400 -16677153 - MER5A DNA MER1_type -113 76 8 544 241 37 37 chr11 134106518 134106680 -16676873 - MIR SINE MIR -51 211 50 350 242 92 33 chr11 134106723 134106843 -16676710 + MER91A DNA MER1_type 70 196 0 474 307 108 9 chr11 134107953 134108165 -16675388 + MIR SINE MIR 20 252 -10 340 233 17 67 chr11 134108556 134108676 -16674877 + MIR SINE MIR 32 145 -117 216 179 0 0 chr11 134109303 134109342 -16674211 + (TATG)n Simple_repeat Simple_repeat 2 40 0 897 157 0 0 chr11 134109354 134109488 -16674065 + FLAM_C SINE Alu 1 134 -9 257 167 0 0 chr11 134109626 134109674 -16673879 + L1MB1 LINE L1 6093 6140 -28 1965 97 111 4 chr11 134109674 134109953 -16673600 + AluSg1 SINE Alu 1 309 0 33 66 0 0 chr11 134110075 134110136 -16673417 + GC_rich Low_complexity Low_complexity 1 61 0 225 0 0 0 chr11 134110155 134110180 -16673373 + (A)n Simple_repeat Simple_repeat 1 25 0 455 263 26 0 chr11 134111075 134111189 -16672364 - MIR3 SINE MIR -4 204 88 2050 88 4 8 chr11 134111252 134111513 -16672040 + AluSx SINE Alu 36 295 -17 186 171 0 0 chr11 134111995 134112036 -16671517 + CT-rich Low_complexity Low_complexity 1 41 0 196 264 0 19 chr11 134112717 134112770 -16670783 - MIR SINE MIR -140 68 17 2340 109 0 3 chr11 134112985 134113287 -16670266 - AluSx SINE Alu -11 301 1 571 298 5 42 chr11 134114740 134114931 -16668622 - MER5A DNA MER1_type -3 186 3 224 295 48 57 chr11 134114959 134115064 -16668489 - MIR SINE MIR -56 152 49 297 273 13 0 chr11 134115101 134115178 -16668375 + L3b LINE CR1 1311 1388 -195 248 288 83 61 chr11 134115405 134115537 -16668016 + MIR3 SINE MIR 41 175 -33 188 388 50 0 chr11 134115542 134115622 -16667931 + L2 LINE L2 3188 3271 -1 2192 114 0 0 chr11 134115648 134115945 -16667608 + AluSg SINE Alu 1 297 -13 381 311 26 36 chr11 134117398 134117419 -16666134 - MIR SINE MIR -63 145 125 2142 186 37 20 chr11 134117419 134117876 -16665677 + MLT1C LTR MaLR 1 465 -2 381 311 26 36 chr11 134117876 134118031 -16665522 - MIR SINE MIR -83 125 2 212 300 7 45 chr11 134118088 134118222 -16665331 - MIR SINE MIR -70 192 36 1587 188 58 17 chr11 134118692 134119054 -16664499 + MLT2C1 LTR ERVL 1 377 -20 396 0 0 0 chr11 134119056 134119100 -16664453 + (CA)n Simple_repeat Simple_repeat 2 45 0 271 226 0 0 chr11 134119259 134119312 -16664241 - L2 LINE L2 -3 3310 3258 393 173 19 10 chr11 134120088 134120192 -16663361 + CT-rich Low_complexity Low_complexity 1 105 0 477 214 294 20 chr11 134120686 134120887 -16662666 + MIR SINE MIR 6 261 -1 779 159 116 0 chr11 134122329 134122467 -16661086 + FRAM SINE Alu 1 154 -12 21 0 0 0 chr11 134122467 134122488 -16661065 + AT_rich Low_complexity Low_complexity 1 21 0 2369 105 0 0 chr11 134123071 134123367 -16660186 + AluSg SINE Alu 1 296 -14 346 316 43 56 chr11 134123622 134123856 -16659697 - MIR SINE MIR 0 262 32 777 286 20 0 chr11 134124782 134124978 -16658575 - MIR SINE MIR -61 201 2 250 274 16 16 chr11 134125763 134125825 -16657728 + MIR SINE MIR 92 153 -55 205 256 61 49 chr11 134127555 134127637 -16655916 - MIR3 SINE MIR -2 206 124 718 283 75 0 chr11 134127668 134127908 -16655645 - Charlie8 DNA MER1_type -2157 260 3 191 255 21 0 chr11 134127925 134127972 -16655581 - MIR SINE MIR -82 126 79 464 279 37 37 chr11 134128148 134128309 -16655244 + MIR SINE MIR 22 182 -80 206 135 0 27 chr11 134128978 134129015 -16654538 + (AGGGGG)n Simple_repeat Simple_repeat 3 38 0 444 19 0 0 chr11 134130732 134130785 -16652768 + (CA)n Simple_repeat Simple_repeat 2 54 0 357 326 90 0 chr11 134131044 134131188 -16652365 + MER5B DNA MER1_type 19 175 -3 559 236 16 8 chr11 134131640 134131763 -16651790 + MER5B DNA MER1_type 7 130 -48 630 263 80 0 chr11 134131836 134132011 -16651542 + MER5A DNA MER1_type 1 189 0 2092 130 0 13 chr11 134132153 134132454 -16651099 - AluJb SINE Alu -15 297 1 252 244 67 118 chr11 134132543 134132662 -16650891 - MIR3 SINE MIR -48 160 48 315 0 0 0 chr11 134133541 134133576 -16649977 + (TG)n Simple_repeat Simple_repeat 2 36 0 229 284 58 65 chr11 134135070 134135225 -16648328 - MIR SINE MIR -61 201 48 945 188 6 11 chr11 134135816 134135992 -16647561 + AluJb SINE Alu 122 296 -16 2264 115 0 0 chr11 134135998 134136293 -16647260 + AluSc SINE Alu 1 295 -14 450 235 78 0 chr11 134136300 134136415 -16647138 + MIR SINE MIR 81 204 -58 347 256 168 31 chr11 134139668 134139859 -16643694 + MIR SINE MIR 13 229 -33 2201 91 4 0 chr11 134139917 134140233 -16643320 - AluSx SINE Alu 0 325 9 440 317 131 9 chr11 134140658 134140879 -16642674 - MIR SINE MIR -13 249 2 182 314 0 0 chr11 134141598 134141649 -16641904 - MIR3 SINE MIR -6 202 152 721 209 146 0 chr11 134141655 134141813 -16641740 + MER5A DNA MER1_type 8 188 -1 2105 128 3 10 chr11 134142324 134142621 -16640932 - AluSx SINE Alu -17 295 1 490 263 191 49 chr11 134143478 134144019 -16639534 + L2 LINE L2 2507 3226 -87 303 170 64 142 chr11 134144165 134144306 -16639247 - MER94 DNA DNA 0 134 5 325 345 30 0 chr11 134144677 134144824 -16638729 + MIR SINE MIR 32 182 -63 234 355 83 0 chr11 134145912 134146033 -16637520 + L2 LINE L2 3181 3311 -2 516 254 40 16 chr11 134146894 134147020 -16636533 + MIR SINE MIR 106 234 -28 310 274 202 0 chr11 134147180 134147304 -16636249 + L2 LINE L2 3123 3271 -1 249 364 68 8 chr11 134147475 134147593 -16635960 - L2 LINE L2 -11 3261 3137 2337 106 0 0 chr11 134149863 134150155 -16633398 - AluSx SINE Alu -18 294 3 743 284 58 12 chr11 134151722 134151971 -16631582 + MIR SINE MIR 4 261 -1 257 346 72 20 chr11 134151992 134152145 -16631408 + MIR SINE MIR 49 209 -53 255 281 0 0 chr11 134152585 134152642 -16630911 + L2 LINE L2 3206 3262 -10 202 344 11 32 chr11 134153210 134153303 -16630250 + L3b LINE CR1 1477 1567 -16 738 314 50 50 chr11 134154061 134154418 -16629135 - L2 LINE L2 -2 3270 2914 532 344 15 15 chr11 134154460 134154719 -16628834 - L2 LINE L2 -584 2730 2472 277 280 181 55 chr11 134154721 134154992 -16628561 - L2 LINE L2 -1201 2113 1809 1966 150 0 13 chr11 134155779 134156086 -16627467 - AluSx SINE Alu -9 303 1 286 264 132 9 chr11 134157211 134157317 -16626236 - L2 LINE L2 -2 3311 3193 635 244 0 32 chr11 134157373 134157529 -16626024 - MER5A DNA MER1_type -28 161 11 237 304 135 31 chr11 134159285 134159574 -16623979 + L2 LINE L2 1804 2122 -1192 227 161 11 0 chr11 134159895 134159943 -16623610 - MIR SINE MIR -86 122 73 333 341 59 30 chr11 134160262 134160397 -16623156 + MIR3 SINE MIR 5 143 -65 180 111 0 0 chr11 134160400 134160427 -16623126 + (TAA)n Simple_repeat Simple_repeat 3 29 0 2080 107 0 14 chr11 134160437 134160728 -16622825 + AluSg SINE Alu 1 287 -23 207 0 0 0 chr11 134160732 134160755 -16622798 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 220 280 0 0 chr11 134161163 134161247 -16622306 + CT-rich Low_complexity Low_complexity 1 84 0 234 150 0 0 chr11 134161914 134161954 -16621599 + (TG)n Simple_repeat Simple_repeat 2 41 0 239 313 0 102 chr11 134162001 134162129 -16621424 + MIR3 SINE MIR 1 115 -93 208 167 0 24 chr11 134162381 134162423 -16621130 + (CCA)n Simple_repeat Simple_repeat 2 42 0 207 250 0 31 chr11 134163385 134163449 -16620104 + C-rich Low_complexity Low_complexity 1 62 0 23 0 0 0 chr11 134165392 134165415 -16618138 + AT_rich Low_complexity Low_complexity 1 23 0 195 161 32 16 chr11 134166336 134166398 -16617155 + (TG)n Simple_repeat Simple_repeat 1 63 0 476 121 33 50 chr11 134166445 134166627 -16616926 + (TG)n Simple_repeat Simple_repeat 2 180 0 341 92 53 0 chr11 134166724 134166800 -16616753 + (TG)n Simple_repeat Simple_repeat 2 81 0 200 136 45 15 chr11 134166833 134166899 -16616654 + (TG)n Simple_repeat Simple_repeat 2 69 0 217 138 17 17 chr11 134166959 134167017 -16616536 + (TG)n Simple_repeat Simple_repeat 2 59 0 186 70 23 47 chr11 134167052 134167095 -16616458 + (TG)n Simple_repeat Simple_repeat 2 43 0 280 260 85 81 chr11 134167710 134167956 -16615597 + L2 LINE L2 2814 3060 -212 183 42 0 0 chr11 134168176 134168200 -16615353 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 237 313 125 18 chr11 134168958 134169070 -16614483 - MIR SINE MIR -65 197 74 1948 163 0 3 chr11 134169372 134169673 -16613880 + AluJb SINE Alu 1 300 -12 206 308 215 47 chr11 134170076 134170355 -16613198 + L3 LINE CR1 1213 1538 -39 358 260 190 30 chr11 134170391 134170591 -16612962 - MIR SINE MIR 0 262 31 228 159 48 63 chr11 134170906 134170969 -16612584 - L2 LINE L2 -11 3302 3241 270 184 163 21 chr11 134171087 134171228 -16612325 - L1ME4a LINE L1 -1 6120 5960 2408 72 3 13 chr11 134173477 134173782 -16609771 + AluSp SINE Alu 1 302 -11 460 299 91 10 chr11 134173986 134174183 -16609370 - MIR SINE MIR -22 240 28 920 180 11 26 chr11 134175004 134175193 -16608360 - AluJo SINE Alu -5 307 122 1266 138 0 11 chr11 134175207 134175388 -16608165 + FRAM SINE Alu 1 175 -1 448 283 53 77 chr11 134175540 134176007 -16607546 + L1ME3A LINE L1 5426 5881 -289 493 279 100 15 chr11 134176616 134176834 -16606719 + MIR SINE MIR 26 261 -1 276 185 0 0 chr11 134176854 134176908 -16606645 + GA-rich Low_complexity Low_complexity 2 55 0 2191 125 0 7 chr11 134176916 134177213 -16606340 - AluSq SINE Alu -18 295 1 714 253 25 83 chr11 134179123 134179310 -16604243 + MIR SINE MIR 2 169 -93 1569 189 42 14 chr11 134179310 134179596 -16603957 - AluJo SINE Alu -16 296 3 714 253 25 83 chr11 134179596 134179685 -16603868 + MIR SINE MIR 169 262 0 78 71 0 0 chr11 134179725 134179880 -16603673 + AT_rich Low_complexity Low_complexity 1 155 0 21 36 0 0 chr11 134179930 134179958 -16603595 + AT_rich Low_complexity Low_complexity 1 28 0 270 250 30 0 chr11 134180217 134180317 -16603236 + MER103 DNA DNA 55 157 -9 204 158 0 0 chr11 134180329 134180367 -16603186 + (TG)n Simple_repeat Simple_repeat 2 39 0 2865 80 11 8 chr11 134180673 134181047 -16602506 + THE1C LTR MaLR 1 375 0 1878 301 168 27 chr11 134181404 134182652 -16600901 - L2 LINE L2 -844 2470 1047 245 211 0 19 chr11 134182749 134182801 -16600752 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 411 228 257 6 chr11 134183093 134183264 -16600289 - MIR SINE MIR -2 260 47 1525 193 71 36 chr11 134183401 134184004 -16599549 + L1MB4 LINE L1 1762 2478 -3906 7534 205 40 14 chr11 134184028 134184762 -16598791 + L1MB4 LINE L1 3576 4289 -2127 1625 107 66 119 chr11 134184762 134185081 -16598472 + AluSp SINE Alu 1 302 -11 7534 205 40 14 chr11 134185081 134185410 -16598143 + L1MB4 LINE L1 4289 4608 -1808 2179 117 3 10 chr11 134185410 134185740 -16597813 + AluSq SINE Alu 1 313 0 7534 205 40 14 chr11 134185740 134186927 -16596626 + L1MB4 LINE L1 4608 5881 -535 1046 170 63 124 chr11 134186929 134187323 -16596230 - MLT1A2 LTR MaLR -4 370 1 2765 150 19 19 chr11 134187323 134187509 -16596044 + L1MB4 LINE L1 5876 6061 -355 2250 92 7 0 chr11 134187509 134187802 -16595751 + AluSg SINE Alu 1 295 -15 2765 150 19 19 chr11 134187802 134187830 -16595723 + L1MB4 LINE L1 6061 6088 -328 2149 98 34 65 chr11 134187830 134188216 -16595337 - THE1C LTR MaLR 0 375 2 2765 150 19 19 chr11 134188216 134188532 -16595021 + L1MB4 LINE L1 6087 6407 -9 1236 160 0 10 chr11 134188685 134188885 -16594668 + AluJb SINE Alu 97 294 -18 412 239 100 96 chr11 134188968 134189167 -16594386 + L1ME3A LINE L1 2036 2233 -3982 2368 74 0 0 chr11 134189167 134189463 -16594090 - AluY SINE Alu -15 296 1 412 239 100 96 chr11 134189463 134189544 -16594009 + L1ME3A LINE L1 2233 2312 -3903 2152 113 13 13 chr11 134189544 134189853 -16593700 + AluSc SINE Alu 1 309 0 412 239 100 96 chr11 134189853 134190361 -16593192 + L1ME3A LINE L1 2312 2788 -3427 2426 164 48 17 chr11 134190373 134190835 -16592718 + MER54A LTR ERVL 426 901 0 3251 221 45 11 chr11 134190836 134191818 -16591735 + L1ME3A LINE L1 2945 3959 -2256 324 211 73 8 chr11 134191807 134191930 -16591623 + L1M4c LINE L1 3146 3276 -3106 * 495 195 185 33 chr11 134191976 134192245 -16591308 + Charlie5 DNA MER1_type 12 2624 0 1281 258 105 18 chr11 134192253 134192756 -16590797 + L1ME3A LINE L1 5685 6231 -8 216 0 0 0 chr11 134193123 134193147 -16590406 + (TG)n Simple_repeat Simple_repeat 1 24 0 333 344 104 27 chr11 134193754 134193937 -16589616 + MIR SINE MIR 40 236 -26 244 143 61 0 chr11 134194166 134194215 -16589338 - MER116 DNA Mariner 0 80 29 1761 157 7 11 chr11 134194230 134194516 -16589037 + AluJo SINE Alu 1 285 -27 23 33 0 0 chr11 134194518 134194548 -16589005 + AT_rich Low_complexity Low_complexity 1 30 0 253 277 24 12 chr11 134194636 134194719 -16588834 - L2 LINE L2 -64 3249 3166 215 360 44 64 chr11 134194810 134194833 -16588720 - L2 LINE L2 -419 2895 2873 1277 140 0 23 chr11 134194833 134195047 -16588506 + MER3 DNA MER1_type 1 209 0 215 360 44 64 chr11 134195047 134195215 -16588338 - L2 LINE L2 -441 2873 2703 219 36 0 0 chr11 134195215 134195243 -16588310 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2075 99 0 0 chr11 134195245 134195507 -16588046 - AluSg SINE Alu -33 277 16 215 360 44 64 chr11 134195507 134195561 -16587992 - L2 LINE L2 -612 2702 2651 3303 157 196 116 chr11 134195955 134197244 -16586309 + pTR5 LTR ERV1 745 2438 0 596 254 166 14 chr11 134197830 134198047 -16585506 + MIR SINE MIR 1 250 -12 570 237 18 47 chr11 134198133 134198302 -16585251 - MIR3 SINE MIR -37 171 8 261 0 0 0 chr11 134198701 134198730 -16584823 + (GGCTG)n Simple_repeat Simple_repeat 4 32 0 635 260 91 10 chr11 134199603 134199811 -16583742 + MER112 DNA MER1_type 30 254 -6 25 0 0 0 chr11 134199894 134199919 -16583634 + AT_rich Low_complexity Low_complexity 1 25 0 215 338 58 29 chr11 134201597 134201736 -16581817 + L2 LINE L2 2715 2857 -457 515 266 32 80 chr11 134202038 134202103 -16581450 + MER5A DNA MER1_type 11 78 -111 1580 183 24 3 chr11 134202103 134202416 -16581137 + AluJo SINE Alu 1 319 0 515 266 32 80 chr11 134202416 134202536 -16581017 + MER5A DNA MER1_type 78 189 0 717 229 172 0 chr11 134202641 134202833 -16580720 + MIR SINE MIR 28 252 -10 663 247 141 18 chr11 134203544 134203771 -16579782 - MIR SINE MIR 0 262 8 1215 290 129 19 chr11 134204035 134204836 -16578717 - L2 LINE L2 -1 3312 2420 326 214 22 56 chr11 134204991 134205080 -16578473 - L1ME2 LINE L1 -218 5946 5861 1042 283 82 7 chr11 134205312 134205824 -16577729 - L1ME2 LINE L1 -454 5708 5158 246 62 0 0 chr11 134205825 134205857 -16577696 + (T)n Simple_repeat Simple_repeat 1 32 0 1997 145 26 0 chr11 134206072 134206376 -16577177 - AluJo SINE Alu 0 312 1 360 313 104 12 chr11 134206549 134206712 -16576841 - L1ME2 LINE L1 -1180 4966 4789 2854 223 19 16 chr11 134206736 134207378 -16576175 + MER82 DNA MER2_type 1 644 -9 2703 162 116 0 chr11 134208064 134208643 -16574910 - L1MB3 LINE L1 -9 6174 5529 781 282 19 38 chr11 134209570 134209836 -16573717 - MIR SINE MIR 0 262 2 271 222 165 34 chr11 134211990 134212166 -16571387 + L1ME4a LINE L1 5793 5991 -130 2219 103 0 13 chr11 134212382 134212682 -16570871 - AluSx SINE Alu -16 296 1 268 341 134 22 chr11 134213176 134213490 -16570063 + L2 LINE L2 1698 2046 -1268 334 332 115 42 chr11 134213625 134213956 -16569597 + L2 LINE L2 2918 3272 0 22 35 0 0 chr11 134215102 134215131 -16568422 + AT_rich Low_complexity Low_complexity 1 29 0 244 311 90 25 chr11 134217207 134217329 -16566224 - MIR SINE MIR -56 206 77 253 258 90 71 chr11 134217454 134217632 -16565921 - MIR SINE MIR -62 146 12 181 379 78 52 chr11 134217663 134217779 -16565774 - L2 LINE L2 -16 3256 3138 183 301 29 78 chr11 134217982 134218188 -16565365 + L2 LINE L2 1633 1828 -1486 635 393 107 14 chr11 134218262 134218951 -16564602 + L2 LINE L2 2218 2970 -344 630 281 100 49 chr11 134219263 134219612 -16563941 - MLT1J LTR MaLR 0 511 145 229 344 0 0 chr11 134219988 134220052 -16563501 + L2 LINE L2 3250 3313 0 749 115 8 25 chr11 134222253 134222375 -16561178 + FLAM_A SINE Alu 20 139 -3 24 77 0 0 chr11 134222650 134222702 -16560851 + AT_rich Low_complexity Low_complexity 1 52 0 336 362 61 41 chr11 134222945 134223191 -16560362 + L2 LINE L2 2596 2846 -468 283 363 48 20 chr11 134223243 134223389 -16560164 + L2 LINE L2 2924 3073 -199 232 328 37 0 chr11 134223604 134223683 -16559870 + MIR SINE MIR 55 144 -69 22 56 0 0 chr11 134223954 134223990 -16559563 + AT_rich Low_complexity Low_complexity 1 36 0 235 383 106 11 chr11 134225224 134225404 -16558149 - L3b LINE CR1 -14 1569 1373 21 0 0 0 chr11 134225746 134225767 -16557786 + AT_rich Low_complexity Low_complexity 1 21 0 211 359 0 39 chr11 134225832 134225935 -16557618 - L3b LINE CR1 -227 1356 1258 391 224 12 0 chr11 134226150 134226235 -16557318 + MIR SINE MIR 119 204 -58 363 262 22 104 chr11 134226371 134226554 -16556999 - MER5B DNA MER1_type -3 175 8 200 330 11 33 chr11 134226643 134226734 -16556819 - L2 LINE L2 -67 3246 3158 * 774 249 90 0 chr11 134226732 134226933 -16556620 - MIR SINE MIR -31 231 13 302 281 134 23 chr11 134227141 134227312 -16556241 + MIR SINE MIR 48 237 -25 581 248 121 8 chr11 134228848 134229040 -16554513 + MIR SINE MIR 50 262 0 310 301 147 32 chr11 134229250 134229406 -16554147 + L2 LINE L2 3098 3271 -1 6415 135 17 39 chr11 134230193 134231377 -16552176 - L1MC1 LINE L1 0 6333 5175 1803 161 68 3 chr11 134231956 134232279 -16551274 - MER2 DNA MER2_type 0 344 1 1402 146 34 31 chr11 134233814 134234137 -16549416 + MER33 DNA MER1_type 1 324 0 498 325 90 43 chr11 134234890 134235266 -16548287 + L3b LINE CR1 1105 1498 -85 263 127 0 36 chr11 134235796 134235851 -16547702 + (CATA)n Simple_repeat Simple_repeat 4 56 0 6409 136 73 7 chr11 134235851 134237006 -16546547 - Tigger3b DNA MER2_type 0 1231 1 325 314 0 16 chr11 134237064 134237188 -16546365 - LTR67 LTR ERVL 0 557 436 438 263 97 0 chr11 134237377 134237491 -16546062 - L2 LINE L2 -1 3312 3188 293 256 175 31 chr11 134238497 134238657 -16544896 - HERVL LTR ERVL -555 4930 4748 335 335 36 30 chr11 134238852 134239019 -16544534 - HERVL LTR ERVL -4011 1643 1476 2427 65 3 10 chr11 134239236 134239543 -16544010 - AluY SINE Alu -6 305 1 349 254 71 63 chr11 134240391 134240517 -16543036 - LTR67 LTR ERVL -1 556 430 235 236 36 0 chr11 134240976 134241031 -16542522 - L2 LINE L2 -3 3310 3254 240 308 66 33 chr11 134242265 134242356 -16541197 - L2 LINE L2 -19 3253 3160 1522 278 59 54 chr11 134242370 134242978 -16540575 + L2 LINE L2 2077 2687 -627 2108 135 0 10 chr11 134243019 134243331 -16540222 + AluSx SINE Alu 1 309 -3 852 249 138 19 chr11 134243340 134243701 -16539852 + L2 LINE L2 2889 3292 -21 2136 116 7 3 chr11 134243926 134244218 -16539335 + AluSx SINE Alu 1 293 -19 6726 52 26 0 chr11 134244405 134245265 -16538288 + L1PA6 LINE L1 5273 6154 0 23 86 0 0 chr11 134246843 134246901 -16536652 + AT_rich Low_complexity Low_complexity 1 58 0 1246 291 153 26 chr11 134247036 134248483 -16535070 - L1M4 LINE L1 -891 5255 3625 968 217 98 0 chr11 134249006 134249250 -16534303 - L1ME1 LINE L1 -5 6161 5894 986 175 11 0 chr11 134249251 134249434 -16534119 - L1MD2 LINE L1 -3 6356 6172 887 228 32 12 chr11 134249537 134249783 -16533770 + L1M4 LINE L1 4710 4960 -1186 231 61 0 0 chr11 134249793 134249826 -16533727 + LTR14B LTR ERVK 4 36 -572 1012 246 43 13 chr11 134249836 134250137 -16533416 - L1M4 LINE L1 -1426 4720 4411 985 148 27 0 chr11 134250137 134250286 -16533267 - Tigger3(Golem) DNA MER2_type 0 3029 2877 7402 234 55 26 chr11 134250286 134252767 -16530786 - L1M4 LINE L1 -1174 4972 2420 307 196 16 8 chr11 134253343 134253440 -16530113 - L1ME1 LINE L1 -320 5846 5748 384 337 116 0 chr11 134253853 134254025 -16529528 + MIR3 SINE MIR 16 207 -1 2144 121 0 7 chr11 134254237 134254534 -16529019 - AluSx SINE Alu -17 295 1 207 339 0 0 chr11 134256450 134256509 -16527044 - L2 LINE L2 -463 2851 2793 1189 190 4 32 chr11 134256513 134256760 -16526793 - MLT1E2 LTR MaLR 0 626 387 664 172 148 0 chr11 134256779 134256907 -16526646 - MLT1E2 LTR MaLR -340 286 140 207 330 106 0 chr11 134256940 134257034 -16526519 - L2 LINE L2 -527 2787 2684 260 360 29 0 chr11 134257088 134257227 -16526326 - LTR67 LTR ERVL -46 511 369 252 335 40 77 chr11 134257596 134257921 -16525632 - L2 LINE L2 -693 2621 2309 354 227 47 55 chr11 134258176 134258267 -16525286 - HAL1b LINE L1 -738 610 519 1615 189 99 14 chr11 134258267 134258632 -16524921 - MSTD LTR MaLR 0 396 1 354 227 47 55 chr11 134258632 134258668 -16524885 - HAL1b LINE L1 -829 519 484 204 135 0 0 chr11 134259329 134259366 -16524187 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 36 44 0 15 chr11 134259418 134259467 -16524086 + AT_rich Low_complexity Low_complexity 1 50 -17 2267 87 0 3 chr11 134259467 134259754 -16523799 - AluSg SINE Alu -23 287 2 36 44 0 15 chr11 134259754 134259772 -16523781 + AT_rich Low_complexity Low_complexity 50 67 0 354 286 48 65 chr11 134259841 134260009 -16523544 - MIR SINE MIR -50 212 48 712 191 15 0 chr11 134260092 134260223 -16523330 - FLAM_C SINE Alu 0 133 1 21 36 0 0 chr11 134260379 134260407 -16523146 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr11 134261604 134261627 -16521926 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 195 42 0 0 chr11 134265068 134265092 -16518461 + (TA)n Simple_repeat Simple_repeat 2 25 0 31 44 0 0 chr11 134265136 134265181 -16518372 + AT_rich Low_complexity Low_complexity 1 45 0 808 245 33 16 chr11 134266031 134266215 -16517338 - MIR SINE MIR -74 188 2 605 347 115 17 chr11 134267373 134267782 -16515771 - LTR16A LTR ERVL 0 450 2 3424 338 68 38 chr11 134267908 134271004 -16512549 - ERVL LTR ERVL -150 5335 2127 4034 286 75 23 chr11 134271403 134271812 -16511741 - ERVL LTR ERVL -3010 1986 1600 2075 92 7 0 chr11 134271812 134272137 -16511416 - AluSx SINE Alu 0 327 1 4034 286 75 23 chr11 134272137 134273186 -16510367 - ERVL LTR ERVL -3396 1600 564 283 205 27 18 chr11 134273228 134273340 -16510213 + (TA)n Simple_repeat Simple_repeat 1 113 0 28 0 0 0 chr11 134278123 134278151 -16505402 + AT_rich Low_complexity Low_complexity 1 28 0 983 208 0 0 chr11 134281238 134281411 -16502142 + MER5A DNA MER1_type 17 189 0 197 187 32 24 chr11 134282698 134282821 -16500732 + (CA)n Simple_repeat Simple_repeat 2 125 0 229 143 16 16 chr11 134282929 134282992 -16500561 + (CA)n Simple_repeat Simple_repeat 2 64 0 394 263 23 6 chr11 134283073 134283244 -16500309 + (CA)n Simple_repeat Simple_repeat 2 175 0 207 260 0 27 chr11 134283255 134283328 -16500225 + (CA)n Simple_repeat Simple_repeat 2 72 0 404 298 71 76 chr11 134285551 134285789 -16497764 - MIR SINE MIR -6 256 20 203 328 83 62 chr11 134286683 134286875 -16496678 + MIR3 SINE MIR 1 164 -44 258 125 0 0 chr11 134288964 134289012 -16494541 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 857 193 3 3 chr11 134289142 134289437 -16494116 + (TCCA)n Simple_repeat Simple_repeat 1 295 0 180 207 69 69 chr11 134289508 134289566 -16493987 - L2 LINE L2 -15 3257 3200 1545 162 14 37 chr11 134289831 134290148 -16493405 - AluJo SINE Alu 0 312 3 195 247 88 100 chr11 134291357 134291564 -16491989 - MIR SINE MIR -37 225 30 255 167 0 0 chr11 134292029 134292071 -16491482 + L2 LINE L2 3271 3312 -1 857 246 34 30 chr11 134292243 134292479 -16491074 + MIR SINE MIR 20 256 -6 345 24 0 0 chr11 134293187 134293229 -16490324 + (CA)n Simple_repeat Simple_repeat 1 42 0 202 316 79 0 chr11 134295040 134295116 -16488437 + MIR SINE MIR 10 91 -171 501 275 171 14 chr11 134295227 134295438 -16488115 + MIR SINE MIR 13 256 -6 2368 153 3 3 chr11 134296320 134296685 -16486868 + MLT1A1 LTR MaLR 1 365 0 380 71 19 2 chr11 134296685 134296742 -16486811 + MLT1A1-int LTR MaLR 1 56 -1315 701 183 0 0 chr11 134296745 134296860 -16486693 + AluJ SINE Alu 3 117 -195 1081 148 11 0 chr11 134297301 134297477 -16486076 + AluJ SINE Alu 120 297 -15 662 139 56 0 chr11 134297477 134297585 -16485968 + MLT-int LTR MaLR 51 164 -1571 555 330 86 53 chr11 134297915 134298276 -16485277 + L2 LINE L2 2430 2802 -512 1202 286 71 27 chr11 134298276 134298904 -16484649 + L2 LINE L2 2659 3312 -1 566 316 69 62 chr11 134298916 134299349 -16484204 + L2 LINE L2 2830 3265 -7 755 252 179 0 chr11 134303186 134303404 -16480149 - MIR SINE MIR -3 259 3 398 262 127 0 chr11 134303500 134303626 -16479927 - MIR3 SINE MIR -7 201 60 2253 86 0 0 chr11 134305542 134305843 -16477710 + AluY SINE Alu 1 301 -10 180 0 0 0 chr11 134305989 134306009 -16477544 + (A)n Simple_repeat Simple_repeat 1 20 0 5625 217 66 18 chr11 134306064 134307489 -16476064 - L1MC4 LINE L1 0 8042 6539 1960 114 0 44 chr11 134307489 134307805 -16475748 - AluSg SINE Alu -8 302 1 5625 217 66 18 chr11 134307805 134307886 -16475667 - L1MC4 LINE L1 -1503 6539 6463 2267 245 172 57 chr11 134307888 134309090 -16474463 - L1MC4 LINE L1 0 8042 6703 411 21 0 0 chr11 134309097 134309145 -16474408 + (CA)n Simple_repeat Simple_repeat 1 48 0 1931 102 3 14 chr11 134310751 134311035 -16472518 - AluSx SINE Alu -14 298 18 298 257 71 0 chr11 134311067 134311180 -16472373 - L2 LINE L2 -219 3053 2933 202 299 94 8 chr11 134311380 134311497 -16472056 - MIR SINE MIR -61 201 75 529 262 158 11 chr11 134311553 134311736 -16471817 + MIR SINE MIR 36 245 -17 474 273 0 0 chr11 134311871 134312139 -16471414 + (CA)n Simple_repeat Simple_repeat 1 268 0 505 229 52 39 chr11 134312905 134313058 -16470495 - MIR3 SINE MIR 0 208 54 290 248 119 18 chr11 134313080 134313189 -16470364 + MIR SINE MIR 21 140 -122 2227 119 0 0 chr11 134314201 134314494 -16469059 + AluSg1 SINE Alu 1 293 -16 1848 204 25 34 chr11 134315292 134315763 -16467790 - MLT1C LTR MaLR 0 467 1 379 293 65 78 chr11 134316579 134316886 -16466667 - L2 LINE L2 -49 3223 2921 217 354 149 7 chr11 134317666 134317968 -16465585 + L2 LINE L2 1609 1953 -1361 529 348 49 43 chr11 134318003 134318469 -16465084 + L2 LINE L2 2804 3272 0 234 299 96 34 chr11 134319036 134319213 -16464340 - L2 LINE L2 -561 2753 2566 268 266 79 43 chr11 134319765 134319904 -16463649 - L2 LINE L2 -186 3086 2943 345 298 33 0 chr11 134321067 134321188 -16462365 + MIR SINE MIR 105 229 -33 394 267 0 67 chr11 134321366 134321501 -16462052 + MIR3 SINE MIR 15 140 -68 431 291 194 5 chr11 134321607 134321813 -16461740 - MIR SINE MIR -16 246 2 535 283 30 0 chr11 134323800 134323966 -16459587 - MIR SINE MIR -3 259 89 701 262 28 23 chr11 134324259 134324473 -16459080 - MIR SINE MIR -26 236 22 308 368 68 13 chr11 134324922 134325305 -16458248 + L1MC4a LINE L1 4762 5165 -981 21 36 0 0 chr11 134325338 134325366 -16458187 + AT_rich Low_complexity Low_complexity 1 28 0 2543 73 0 0 chr11 134325437 134325737 -16457816 - AluSc SINE Alu -9 300 1 716 275 238 22 chr11 134325747 134326332 -16457221 + L1MC4a LINE L1 5264 5974 -1834 313 247 22 11 chr11 134326506 134326595 -16456958 + L1ME1 LINE L1 6060 6149 -17 430 266 101 19 chr11 134326743 134326901 -16456652 - MIR SINE MIR -16 246 76 199 318 84 19 chr11 134328733 134328840 -16454713 - L2 LINE L2 -23 3249 3136 292 265 109 12 chr11 134329429 134329631 -16453922 + MIR3 SINE MIR 44 262 0 345 257 54 149 chr11 134330956 134331068 -16452485 - MIR SINE MIR -13 249 128 1553 183 55 11 chr11 134331068 134331216 -16452337 - AluJb SINE Alu -26 286 146 186 43 0 0 chr11 134331216 134331239 -16452314 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2066 134 0 0 chr11 134331239 134331523 -16452030 - AluSx SINE Alu -28 284 1 219 36 0 0 chr11 134331523 134331551 -16452002 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1553 183 55 11 chr11 134331551 134331674 -16451879 - AluJb SINE Alu -165 147 1 345 257 54 149 chr11 134331674 134331802 -16451751 - MIR SINE MIR -134 128 32 1718 156 46 14 chr11 134332203 134332486 -16451067 + AluJo SINE Alu 1 292 -20 923 234 10 0 chr11 134334780 134334972 -16448581 + MER58A DNA MER1_type 30 223 -1 323 316 86 13 chr11 134336079 134336231 -16447322 - MIR3 SINE MIR -8 200 38 2107 41 0 0 chr11 134338226 134338472 -16445081 + L1PA3 LINE L1 5910 6155 0 212 291 0 0 chr11 134338718 134338773 -16444780 - L2 LINE L2 -16 3256 3202 779 167 7 0 chr11 134339036 134339174 -16444379 - L1MA8 LINE L1 -134 6157 6019 190 263 272 18 chr11 134339827 134339941 -16443612 + MIR SINE MIR 58 200 -62 1536 187 18 14 chr11 134342008 134342286 -16441267 + AluJo SINE Alu 1 279 -33 216 0 0 0 chr11 134342291 134342315 -16441238 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1052 195 45 0 chr11 134343217 134343417 -16440136 + MER3 DNA MER1_type 1 209 0 387 206 294 0 chr11 134343866 134344002 -16439551 - MIR SINE MIR -6 256 81 198 0 0 0 chr11 134344292 134344314 -16439239 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 555 191 29 22 chr11 134344424 134344560 -16438993 - L1MB8 LINE L1 -2 6176 6040 8006 149 22 10 chr11 134344596 134345278 -16438275 - L1MA4A LINE L1 -10 7355 6683 401 19 38 0 chr11 134345278 134345331 -16438222 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 8006 149 22 10 chr11 134345331 134347039 -16436514 - L1MA4A LINE L1 -682 6683 4930 45573 34 3 1 chr11 134347045 134353183 -16430370 - L1PA3 LINE L1 0 6155 7 9578 198 72 25 chr11 134353189 134353375 -16430178 - L1MA4A LINE L1 -2260 4948 4772 405 0 0 0 chr11 134353375 134353420 -16430133 + (TG)n Simple_repeat Simple_repeat 1 45 0 9578 198 72 25 chr11 134353420 134355743 -16427810 - L1MA4A LINE L1 -2436 4772 2561 2153 115 7 3 chr11 134355743 134356029 -16427524 + AluSc SINE Alu 1 287 -22 9578 198 72 25 chr11 134356029 134356307 -16427246 - L1MA4A LINE L1 -4647 2561 2298 2185 112 7 0 chr11 134356307 134356624 -16426929 - AluSp SINE Alu 0 319 1 9578 198 72 25 chr11 134356624 134358481 -16425072 - L1MA4A LINE L1 -4910 2298 66 881 84 0 0 chr11 134358483 134358590 -16424963 + AluSc SINE Alu 181 287 -22 422 111 0 14 chr11 134358591 134358663 -16424890 - L1M2c LINE L1 -4828 1961 1891 1677 178 0 4 chr11 134358670 134358940 -16424613 - AluJo SINE Alu -38 274 6 441 251 115 33 chr11 134358973 134359156 -16424397 - MLT1K LTR MaLR 0 588 391 255 210 62 49 chr11 134359466 134359547 -16424006 - MIR SINE MIR -116 146 65 253 311 117 0 chr11 134361754 134361857 -16421696 - L2 LINE L2 0 3272 3158 1006 135 141 5 chr11 134363073 134363265 -16420288 - MER20 DNA MER1_type -1 218 1 663 98 0 0 chr11 134364231 134364323 -16419230 - AluY SINE Alu -12 299 208 2509 47 0 3 chr11 134364233 134364531 -16419022 - AluY SINE Alu -14 297 1 1982 92 4 0 chr11 134365135 134365384 -16418169 - AluSg SINE Alu -25 285 36 2327 75 0 10 chr11 134367136 134367428 -16416125 - AluY SINE Alu -19 292 4 1740 181 0 10 chr11 134367623 134367921 -16415632 - AluJb SINE Alu -14 298 4 1766 175 0 10 chr11 134368185 134368476 -16415077 + AluJb SINE Alu 1 288 -24 733 252 98 74 chr11 134368483 134368820 -16414733 - MLT1I LTR MaLR -43 366 22 218 373 55 27 chr11 134368916 134369026 -16414527 + MIR SINE MIR 33 145 -63 225 0 0 0 chr11 134372302 134372327 -16411226 + (T)n Simple_repeat Simple_repeat 1 25 0 2609 52 0 3 chr11 134372472 134372778 -16410775 - AluY SINE Alu -6 305 1 2347 113 156 8 chr11 134373423 134373796 -16409757 - MSTA LTR MaLR 0 428 1 683 0 24 0 chr11 134374337 134374419 -16409134 + (GAAA)n Simple_repeat Simple_repeat 1 84 0 363 335 52 7 chr11 134374954 134375109 -16408444 - MIR SINE MIR -15 247 86 1477 180 17 20 chr11 134375312 134375443 -16408110 + AluJo SINE Alu 4 134 -178 2249 87 3 26 chr11 134375443 134375755 -16407798 + AluSc SINE Alu 1 305 -4 1477 180 17 20 chr11 134375755 134375951 -16407602 + AluJo SINE Alu 134 312 0 303 315 0 11 chr11 134376031 134376120 -16407433 + MIR SINE MIR 6 93 -169 1288 308 110 33 chr11 134376120 134377355 -16406198 - L2 LINE L2 0 3313 1990 299 329 39 45 chr11 134377418 134377573 -16405980 + MIR SINE MIR 86 239 -23 1969 85 28 50 chr11 134378354 134378637 -16404916 + AluSx SINE Alu 1 277 -35 244 0 27 27 chr11 134378637 134378674 -16404879 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 26 0 0 0 chr11 134378726 134378752 -16404801 + AT_rich Low_complexity Low_complexity 1 26 0 917 217 0 20 chr11 134379411 134379614 -16403939 + Charlie7 DNA MER1_type 2091 2289 -323 188 262 24 48 chr11 134379695 134379779 -16403774 - MIR SINE MIR 0 262 181 386 294 71 24 chr11 134379948 134380118 -16403435 + MER5A DNA MER1_type 12 189 0 451 198 121 38 chr11 134380135 134380292 -16403261 - Charlie7 DNA MER1_type 0 2612 2443 229 279 65 90 chr11 134380549 134380750 -16402803 - L1ME3A LINE L1 -3 6167 5972 * 3620 276 90 31 chr11 134380728 134383684 -16399869 - L1ME3 LINE L1 -215 5947 2914 2834 3 0 0 chr11 134383846 134384148 -16399405 - AluYa5 SINE Alu -9 302 1 726 251 142 35 chr11 134384151 134384497 -16399056 - Charlie7 DNA MER1_type -2174 438 56 2330 76 3 3 chr11 134384978 134385281 -16398272 + AluY SINE Alu 1 303 -8 1501 112 64 0 chr11 134385990 134386239 -16397314 + L1MA8 LINE L1 5985 6249 -42 849 118 0 0 chr11 134386243 134386353 -16397200 + AluSq/x SINE Alu 37 146 -166 490 330 35 10 chr11 134386365 134386565 -16396988 - MIR SINE MIR -51 211 7 360 0 0 0 chr11 134386625 134386665 -16396888 + (CA)n Simple_repeat Simple_repeat 2 41 0 344 324 79 61 chr11 134387605 134388059 -16395494 + L1M2 LINE L1 3 497 -6341 1810 199 31 70 chr11 134388892 134389434 -16394119 + L1PA16 LINE L1 2144 2664 -3482 2408 172 45 17 chr11 134389461 134389537 -16394016 + L1MA9 LINE L1 5261 5333 -979 6296 92 4 31 chr11 134389537 134390624 -16392929 + L1PB1 LINE L1 4958 6019 -132 2440 69 0 7 chr11 134390624 134390927 -16392626 + AluY SINE Alu 1 301 -10 6296 92 4 31 chr11 134390927 134391056 -16392497 + L1PB1 LINE L1 6019 6150 -1 2408 172 45 17 chr11 134391056 134391546 -16392007 + L1MA9 LINE L1 5333 5796 -516 210 118 0 0 chr11 134391546 134391580 -16391973 + (CA)n Simple_repeat Simple_repeat 1 34 0 2408 172 45 17 chr11 134391580 134391607 -16391946 + L1MA9 LINE L1 5796 5821 -491 710 182 13 32 chr11 134391608 134391762 -16391791 + L1MA9 LINE L1 5986 6136 -176 5407 156 18 15 chr11 134391775 134393443 -16390110 + L1PA16 LINE L1 4482 6162 -4 1219 220 21 52 chr11 134393469 134393822 -16389731 + L1M4c LINE L1 1 325 -6217 2842 199 38 55 chr11 134393822 134394433 -16389120 + L1M4c LINE L1 527 1126 -5416 2349 131 40 3 chr11 134394433 134394784 -16388769 + THE1B LTR MaLR 1 364 0 2842 199 38 55 chr11 134394784 134394865 -16388688 + L1M4c LINE L1 1126 1207 -5335 542 239 109 42 chr11 134394877 134395115 -16388438 - MLT1C LTR MaLR -73 394 141 * 982 161 21 99 chr11 134395110 134395353 -16388200 + MLT1D LTR MaLR 123 346 -159 340 161 97 97 chr11 134395875 134395999 -16387554 - L1MC4 LINE L1 -1 8041 7918 634 153 0 0 chr11 134396393 134396491 -16387062 + AluSg/x SINE Alu 174 271 -39 206 257 69 50 chr11 134396573 134396674 -16386879 - L2 LINE L2 -607 2707 2605 213 314 49 49 chr11 134396744 134396846 -16386707 + L2 LINE L2 3073 3174 -98 252 276 42 136 chr11 134396883 134397169 -16386384 + MIR SINE MIR 3 261 -1 25 0 0 0 chr11 134397177 134397202 -16386351 + AT_rich Low_complexity Low_complexity 1 25 0 2255 273 71 89 chr11 134397658 134398936 -16384617 + L2 LINE L2 545 1795 -1519 1466 148 0 5 chr11 134398936 134399159 -16384394 + AluJb SINE Alu 85 306 -6 2255 273 71 89 chr11 134399159 134399342 -16384211 + L2 LINE L2 1795 1980 -1334 3250 181 55 29 chr11 134399357 134400091 -16383462 - L1ME2 LINE L1 -9 6155 5403 2289 194 56 17 chr11 134400092 134400500 -16383053 - MSTB LTR MaLR -2 424 1 8960 183 21 11 chr11 134400505 134401032 -16382521 - MSTB-int LTR MaLR -5 1646 1126 4232 131 11 19 chr11 134401032 134401672 -16381881 - MER41B LTR ERV1 0 635 1 8960 183 21 11 chr11 134401672 134402774 -16380779 - MSTB-int LTR MaLR -525 1126 1 2295 178 36 14 chr11 134402774 134403189 -16380364 - MSTB LTR MaLR -2 424 1 2002 246 44 5 chr11 134403196 134403781 -16379772 - L1ME2 LINE L1 -745 5401 4794 332 272 73 7 chr11 134404315 134404451 -16379102 + L1ME4a LINE L1 5966 6110 -11 223 308 100 33 chr11 134405542 134405662 -16377891 - L2 LINE L2 -204 3068 2941 351 61 20 0 chr11 134405677 134405726 -16377827 - LTR41 LTR ERVL -719 54 5 2432 183 19 24 chr11 134405830 134406256 -16377297 - MSTB LTR MaLR -2 424 1 315 331 71 27 chr11 134406881 134407065 -16376488 + MIR SINE MIR 45 236 -26 953 168 130 16 chr11 134407069 134407254 -16376299 + AluJo SINE Alu 48 253 -59 228 282 0 24 chr11 134407303 134407388 -16376165 - L1M2 LINE L1 -520 5777 5695 345 226 0 0 chr11 134407775 134407859 -16375694 + (CATATA)n Simple_repeat Simple_repeat 6 89 0 5982 223 101 28 chr11 134408503 134408657 -16374896 - L1M2 LINE L1 -4977 2232 2091 2170 112 7 0 chr11 134408657 134408977 -16374576 - AluSp SINE Alu 0 322 1 5982 223 101 28 chr11 134408977 134410834 -16372719 - L1M2 LINE L1 -5118 2091 66 874 84 0 0 chr11 134410836 134410943 -16372610 + AluSc SINE Alu 181 287 -22 429 111 0 14 chr11 134410944 134411016 -16372537 - L1M2c LINE L1 -4828 1961 1891 1663 178 0 4 chr11 134411023 134411293 -16372260 - AluJo SINE Alu -38 274 6 449 251 115 33 chr11 134411326 134411509 -16372044 - MLT1K LTR MaLR 0 588 391 278 210 62 49 chr11 134411819 134411900 -16371653 - MIR SINE MIR -116 146 65 287 299 112 9 chr11 134415313 134415420 -16368133 - L2 LINE L2 0 3272 3155 623 103 23 0 chr11 134416665 134416752 -16366801 + AluJ/FLAM SINE Alu 4 92 -220 226 265 84 48 chr11 134417525 134417608 -16365945 - MER91B DNA MER1_type -11 179 94 1502 147 62 47 chr11 134417689 134418030 -16365523 + MER4A LTR ERV1 1 346 -318 564 154 194 86 chr11 134418035 134418288 -16365265 + MER4C LTR ERV1 157 445 -20 274 250 19 0 chr11 134418309 134418361 -16365192 - MER91B DNA MER1_type -134 56 4 290 25 0 25 chr11 134418801 134418841 -16364712 + (CA)n Simple_repeat Simple_repeat 2 40 0 493 320 48 26 chr11 134419113 134419385 -16364168 + L1MEd LINE L1 88 365 -5840 357 291 33 46 chr11 134419406 134419557 -16363996 + L1MEd LINE L1 424 572 -5633 834 194 0 26 chr11 134419618 134419773 -16363780 + FRAM SINE Alu 10 160 -16 1909 99 25 179 chr11 134419780 134420183 -16363370 + LTR14B LTR ERVK 3 607 -1 5618 56 11 3 chr11 134420184 134420877 -16362676 + HERVK14 LTR ERVK 1 699 -5246 3205 105 54 0 chr11 134420911 134421359 -16362194 + HERVK14 LTR ERVK 1705 2176 -3769 192 242 0 0 chr11 134422061 134422156 -16361397 + GA-rich Low_complexity Low_complexity 2 96 0 910 77 69 0 chr11 134422381 134422511 -16361042 + HERVK14 LTR ERVK 4279 4417 -1528 * 5950 79 33 8 chr11 134422484 134423333 -16360220 + HERVK14 LTR ERVK 4992 5945 0 308 145 0 32 chr11 134423336 134423398 -16360155 + LTR14B LTR ERVK 1 60 -548 * 2078 99 118 22 chr11 134423395 134423750 -16359803 + LTR14B LTR ERVK 220 608 0 639 285 118 36 chr11 134423775 134424113 -16359440 + L1MEd LINE L1 1263 1661 -4735 5511 151 71 91 chr11 134424113 134425417 -16358136 - MER52C LTR ERV1 0 1278 1 639 285 118 36 chr11 134425417 134425605 -16357948 + L1MEd LINE L1 1661 1832 -4564 845 306 78 14 chr11 134425971 134426609 -16356944 + L1MEd LINE L1 2216 2894 -3321 1019 238 12 40 chr11 134426665 134426917 -16356636 - MIR SINE MIR 0 262 18 240 195 204 44 chr11 134426946 134427059 -16356494 + L1MEd LINE L1 2942 3072 -3143 282 259 82 38 chr11 134427141 134427164 -16356389 + L1MEd LINE L1 3394 3415 -2800 1909 172 3 0 chr11 134427164 134427472 -16356081 + AluSx SINE Alu 1 309 -3 282 259 82 38 chr11 134427472 134427606 -16355947 + L1MEd LINE L1 3415 3558 -2657 2192 113 0 0 chr11 134428356 134428649 -16354904 - AluSg SINE Alu -17 293 1 426 219 70 31 chr11 134429091 134429219 -16354334 - MLT1L LTR MaLR -52 563 431 5834 116 143 42 chr11 134429257 134430407 -16353146 + MER52C LTR ERV1 3 1269 -9 300 135 19 0 chr11 134430413 134430465 -16353088 + MER52C LTR ERV1 1226 1278 0 1987 135 0 10 chr11 134431439 134431742 -16351811 - AluSx SINE Alu -12 300 1 1943 148 3 0 chr11 134432096 134432403 -16351150 - AluSx SINE Alu 0 308 1 201 171 0 0 chr11 134432491 134432526 -16351027 + T-rich Low_complexity Low_complexity 2 36 0 21 36 0 0 chr11 134432792 134432820 -16350733 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr11 134433374 134433399 -16350154 + AT_rich Low_complexity Low_complexity 1 25 0 365 272 89 55 chr11 134434281 134434483 -16349070 - L1MEd LINE L1 -5494 625 417 295 315 37 9 chr11 134434510 134434618 -16348935 - L1MEd LINE L1 -5766 353 243 4195 144 44 40 chr11 134435308 134436057 -16347496 + Tigger1 DNA MER2_type 1 752 -1666 1560 147 21 42 chr11 134436055 134436341 -16347212 + Tigger1 DNA MER2_type 2135 2414 -4 * 2788 110 5 3 chr11 134436346 134436720 -16346833 - THE1C LTR MaLR 0 375 1 1051 210 22 52 chr11 134437280 134437552 -16346001 + AluJb SINE Alu 36 299 -13 2056 252 98 60 chr11 134437572 134438871 -16344682 + L1MEc LINE L1 820 2167 -4229 308 255 30 45 chr11 134439535 134439706 -16343847 + L1MEc LINE L1 2135 2263 -3952 3459 155 26 13 chr11 134439775 134440393 -16343160 + L1MB4 LINE L1 5555 6180 0 394 304 67 43 chr11 134440638 134440967 -16342586 + L2 LINE L2 1776 2112 -1202 466 340 98 51 chr11 134441194 134441767 -16341786 + L2 LINE L2 2188 2787 -527 6789 173 27 9 chr11 134442065 134444074 -16339479 - L1MB7 LINE L1 -16 7128 5083 * 6956 183 40 16 chr11 134444072 134445833 -16337720 - L1MB7 LINE L1 -2509 4597 2792 2060 133 10 0 chr11 134445833 134446134 -16337419 - AluSq SINE Alu -9 304 1 6956 183 40 16 chr11 134446134 134446156 -16337397 - L1MB7 LINE L1 -4314 2792 2772 10518 166 41 20 chr11 134446175 134448100 -16335453 - L1MB7 LINE L1 -4603 2503 196 2859 155 38 8 chr11 134448103 134448575 -16334978 + MER66B LTR ERV1 1 486 0 1030 252 62 12 chr11 134448767 134449092 -16334461 + MER66B-int LTR ERV1 58 398 -6278 955 244 57 28 chr11 134449075 134449358 -16334195 + MER66-int LTR ERV1 271 561 -6115 * 191 187 40 67 chr11 134449358 134449433 -16334120 + L2 LINE L2 2108 2180 -1134 649 160 69 15 chr11 134449433 134449564 -16333989 + MER66-int LTR ERV1 637 774 -5902 796 250 46 28 chr11 134449589 134449805 -16333748 + MER66-int LTR ERV1 885 1104 -5572 531 309 40 0 chr11 134449887 134450013 -16333540 + MER66-int LTR ERV1 2942 3072 -3604 803 271 84 0 chr11 134451226 134451429 -16332124 - MER58A DNA MER1_type 0 224 5 273 357 10 0 chr11 134452457 134452555 -16330998 + HERVL LTR ERVL 3648 3746 -1908 527 285 65 19 chr11 134452619 134452879 -16330674 + L1M4 LINE L1 4891 5162 -984 399 167 29 10 chr11 134452943 134453045 -16330508 + L1M4 LINE L1 5174 5277 -869 21 0 0 0 chr11 134453067 134453088 -16330465 + AT_rich Low_complexity Low_complexity 1 21 0 339 326 107 11 chr11 134453129 134453316 -16330237 + L1MEd LINE L1 466 670 -5449 269 271 116 39 chr11 134453914 134454069 -16329484 + HAL1 LINE L1 2340 2506 -1 1594 258 73 24 chr11 134454395 134454903 -16328650 + L1MEc LINE L1 36 568 -5828 1947 210 11 8 chr11 134454915 134455277 -16328276 - MLT1A1 LTR MaLR -2 363 1 236 204 0 0 chr11 134455289 134455338 -16328215 + MIR SINE MIR 73 121 -141 7584 166 44 26 chr11 134455338 134455690 -16327863 + L1 LINE L1 3115 3459 -2687 2061 128 3 7 chr11 134455690 134455996 -16327557 + AluSq SINE Alu 1 305 -8 7584 166 44 26 chr11 134455996 134456809 -16326744 + L1 LINE L1 3459 4256 -1890 1012 128 11 6 chr11 134456809 134456988 -16326565 + CT-rich Low_complexity Low_complexity 1 180 0 7584 166 44 26 chr11 134456988 134457000 -16326553 + L1 LINE L1 4256 4266 -1880 1756 178 18 0 chr11 134457000 134457286 -16326267 - AluJb SINE Alu -21 291 1 7584 166 44 26 chr11 134457286 134457705 -16325848 + L1 LINE L1 4266 4741 -1405 3201 124 48 32 chr11 134457705 134458268 -16325285 - Tigger3b DNA MER2_type -1 1230 659 2395 119 14 19 chr11 134458271 134458641 -16324912 - L1PB1 LINE L1 -7 6860 6493 255 170 0 0 chr11 134458658 134458705 -16324848 + (TA)n Simple_repeat Simple_repeat 2 48 0 15816 188 23 12 chr11 134458705 134463233 -16320320 - L1PB1 LINE L1 -360 6507 1767 1889 161 7 0 chr11 134463233 134463531 -16320022 - AluSx SINE Alu -1 311 12 15816 188 23 12 chr11 134463531 134464213 -16319340 - L1PB1 LINE L1 -5100 1767 1094 3939 107 5 47 chr11 134464228 134464847 -16318706 + LTR14B LTR ERVK 16 608 0 1680 196 41 3 chr11 134464847 134465210 -16318343 - L1PB1 LINE L1 -5824 1039 663 482 286 12 0 chr11 134465224 134465392 -16318161 - L1PB1 LINE L1 -6593 270 101 919 156 42 0 chr11 134465538 134465730 -16317823 - Tigger3b DNA MER2_type -539 693 494 2897 151 62 2 chr11 134465730 134466201 -16317352 + LTR3b LTR ERVK 1 499 -1 210 227 40 0 chr11 134466268 134466343 -16317210 + (TAAAG)n Simple_repeat Simple_repeat 1 78 0 257 62 0 0 chr11 134466415 134466447 -16317106 + HERVK3 LTR ERVK 187 218 -7025 640 216 111 11 chr11 134466505 134466686 -16316867 + HERVK14 LTR ERVK 68 266 -6977 379 327 0 0 chr11 134466746 134466847 -16316706 + HERVK14 LTR ERVK 580 680 -6563 * 5090 191 40 2 chr11 134466835 134467788 -16315765 + HERVK14 LTR ERVK 1321 2309 -4934 2636 117 12 53 chr11 134467787 134468305 -16315248 + HERVK14 LTR ERVK 2995 5572 -373 * 1248 152 23 18 chr11 134468311 134468343 -16315210 + MER41-int LTR ERV1 5729 5946 0 1317 81 22 22 chr11 134468343 134468528 -16315025 + HERVK14 LTR ERVK 5575 5759 -186 311 200 0 17 chr11 134468528 134468588 -16314965 + MER41C LTR ERV1 1 59 -495 525 48 0 0 chr11 134468590 134468653 -16314900 + HERVK14 LTR ERVK 5822 5884 -61 3088 136 30 4 chr11 134468671 134469143 -16314410 + LTR3b LTR ERVK 5 488 -12 306 167 0 0 chr11 134469143 134469191 -16314362 + LTR3b LTR ERVK 452 499 -1 2603 123 80 16 chr11 134469192 134469630 -16313923 - Tigger3b DNA MER2_type -733 498 33 2624 173 36 19 chr11 134469645 134469760 -16313793 + L1M2 LINE L1 4739 4851 -1295 2166 127 0 7 chr11 134469760 134470060 -16313493 - AluSx SINE Alu -14 298 1 2624 173 36 19 chr11 134470060 134470476 -16313077 + L1M2 LINE L1 4851 5279 -867 1254 193 32 8 chr11 134470509 134470758 -16312795 - MLT1A1 LTR MaLR -106 259 5 2832 141 10 46 chr11 134470762 134471264 -16312289 + L1M2 LINE L1 5275 5758 -533 6180 118 38 11 chr11 134471654 134472551 -16311002 - MER49 LTR ERV1 0 923 3 2381 149 35 44 chr11 134472888 134473318 -16310235 + MSTB LTR MaLR 1 426 0 745 254 86 21 chr11 134473564 134473844 -16309709 + L2 LINE L2 3016 3313 0 2983 52 5 52 chr11 134474058 134474462 -16309091 + L1PA8 LINE L1 5782 6166 -6 232 368 22 66 chr11 134474852 134474988 -16308565 + L2 LINE L2 3118 3247 -25 29 0 0 0 chr11 134474992 134475021 -16308532 + AT_rich Low_complexity Low_complexity 1 29 0 584 226 129 17 chr11 134475236 134475438 -16308115 + LTR54 LTR ERV1 221 475 -35 510 276 161 0 chr11 134477153 134477327 -16306226 + MIR SINE MIR 61 262 0 673 279 47 26 chr11 134477620 134477853 -16305700 + MIR SINE MIR 25 262 0 4632 90 5 5 chr11 134478375 134478973 -16304580 - MER4A LTR ERV1 -2 598 1 544 331 99 56 chr11 134478991 134479292 -16304261 + L2 LINE L2 2358 2645 -627 794 183 15 0 chr11 134479292 134479423 -16304130 - FLAM_C SINE Alu 0 133 1 544 331 99 56 chr11 134479423 134479839 -16303714 + L2 LINE L2 2645 3089 -183 1158 292 41 23 chr11 134480081 134480504 -16303049 + L1MC4a LINE L1 5218 5647 -747 271 207 76 0 chr11 134480517 134480605 -16302948 + L1MC4a LINE L1 5697 5800 -355 300 224 8 104 chr11 134480640 134480765 -16302788 + MER46C DNA MER2_type 1 113 -225 599 325 10 0 chr11 134480849 134481058 -16302495 + Tigger4(Zombi) DNA MER2_type 554 764 -1967 1453 167 65 7 chr11 134481272 134481547 -16302006 - AluJo SINE Alu -21 291 1 293 346 37 21 chr11 134481770 134481958 -16301595 + Tigger4(Zombi) DNA MER2_type 1658 1848 -883 1968 92 133 10 chr11 134481967 134482323 -16301230 - LTR7 LTR ERV1 0 450 1 250 326 0 11 chr11 134482437 134482529 -16301024 + Tigger4(Zombi) DNA MER2_type 2036 2126 -605 263 191 44 0 chr11 134482787 134482855 -16300698 + MER46C DNA MER2_type 114 184 -154 1684 184 16 29 chr11 134482862 134483177 -16300376 + AluJb SINE Alu 1 311 -1 227 254 0 48 chr11 134483249 134483312 -16300241 + MER46C DNA MER2_type 279 338 0 4826 219 103 42 chr11 134483340 134484877 -16298676 + L1M4 LINE L1 14 1645 -4897 894 127 51 6 chr11 134484882 134485039 -16298514 + L1MB7 LINE L1 6021 6184 0 380 261 138 12 chr11 134485041 134485294 -16298259 + L1MC4a LINE L1 5812 6096 -1712 931 227 51 14 chr11 134485781 134485997 -16297556 - MER58A DNA MER1_type 0 224 1 396 284 21 50 chr11 134486331 134486472 -16297081 + MIR3 SINE MIR 51 187 -21 238 315 81 7 chr11 134488297 134488446 -16295107 - L1MC/D LINE L1 -2004 5804 5645 542 261 123 10 chr11 134488474 134488669 -16294884 - MIR SINE MIR -13 249 33 2086 81 60 3 chr11 134488702 134488987 -16294566 + AluSg SINE Alu 2 302 -8 1270 159 14 5 chr11 134489944 134490152 -16293401 + L1PB4 LINE L1 5940 6149 -7 1012 244 112 15 chr11 134492375 134492715 -16290838 - MLT1J2 LTR MaLR -69 381 9 1258 208 57 70 chr11 134493541 134493710 -16289843 + MLT1A1 LTR MaLR 1 171 -194 2497 62 0 13 chr11 134493710 134494014 -16289539 - AluY SINE Alu -11 300 1 1258 208 57 70 chr11 134494014 134494214 -16289339 + MLT1A1 LTR MaLR 171 365 0 246 321 45 67 chr11 134494317 134494451 -16289102 + L2 LINE L2 3134 3264 -8 200 293 0 17 chr11 134494474 134494532 -16289021 - L2 LINE L2 -2 3270 3214 192 215 449 9 chr11 134494905 134495012 -16288541 + MIR SINE MIR 20 173 -89 543 152 0 0 chr11 134495929 134496008 -16287545 + AluJ/FRAM SINE Alu 217 295 -17 243 312 26 19 chr11 134496195 134496219 -16287334 - L1MA10 LINE L1 0 6334 6311 3200 209 50 40 chr11 134496219 134497281 -16286272 - L1ME2 LINE L1 -16 6148 5070 1346 219 82 55 chr11 134497284 134497577 -16285976 - L1ME2 LINE L1 -2621 3525 3241 1932 163 0 22 chr11 134497577 134497896 -16285657 - AluJb SINE Alu 0 312 1 1346 219 82 55 chr11 134497896 134497922 -16285631 - L1ME2 LINE L1 -2905 3241 3217 1474 181 42 125 chr11 134497922 134498330 -16285223 + MLT1A2 LTR MaLR 1 374 0 1346 219 82 55 chr11 134498330 134498381 -16285172 - L1ME2 LINE L1 -2929 3217 3169 2153 114 3 16 chr11 134498381 134498689 -16284864 - AluSx SINE Alu -8 304 1 1346 219 82 55 chr11 134498689 134498938 -16284615 - L1ME2 LINE L1 -2977 3169 2887 1236 291 61 48 chr11 134498938 134499525 -16284028 + MLT2F LTR ERVL 1 595 -68 785 313 61 12 chr11 134499843 134500185 -16283368 + ERVL-F LTR ERVL 318 676 -5088 417 277 82 48 chr11 134500318 134500524 -16283029 - MIR SINE MIR -3 259 47 225 346 56 9 chr11 134500817 134500924 -16282629 - MIR3 SINE MIR -3 205 94 2342 103 6 0 chr11 134501287 134501598 -16281955 + AluSp SINE Alu 1 313 0 555 237 22 22 chr11 134501910 134502049 -16281504 - L2 LINE L2 -221 3092 2954 236 231 46 15 chr11 134502776 134502841 -16280712 - MIR3 SINE MIR -4 204 138 1978 92 113 14 chr11 134503511 134503793 -16279760 + AluSg SINE Alu 1 310 0 283 273 26 0 chr11 134504164 134504241 -16279312 - L2 LINE L2 -3 3310 3232 408 311 71 34 chr11 134504407 134504703 -16278850 - L2 LINE L2 -341 2973 2667 772 315 131 18 chr11 134504713 134505371 -16278182 - L2 LINE L2 -1065 2249 1518 2301 89 0 7 chr11 134505529 134505869 -16277684 - AluSq SINE Alu 0 338 1 934 145 63 0 chr11 134506946 134507105 -16276448 - L1MA10 LINE L1 -3 6331 6163 1149 163 0 0 chr11 134507622 134507800 -16275753 - AluJb SINE Alu 0 312 135 489 309 80 50 chr11 134508582 134509042 -16274511 - L2 LINE L2 -6 3307 2834 463 332 69 9 chr11 134510150 134510382 -16273171 - MIR SINE MIR -16 246 1 255 228 25 13 chr11 134510570 134510649 -16272904 + (TA)n Simple_repeat Simple_repeat 1 80 0 389 247 43 11 chr11 134510689 134510782 -16272771 - MIR SINE MIR -150 112 17 263 364 38 38 chr11 134510848 134511032 -16272521 + L3b LINE CR1 1396 1579 -4 651 302 111 25 chr11 134511462 134512102 -16271451 - L2 LINE L2 -4 3309 2617 829 71 45 27 chr11 134512615 134513015 -16270538 + (CA)n Simple_repeat Simple_repeat 1 407 0 739 331 120 57 chr11 134513020 134514151 -16269402 + L2 LINE L2 1545 2747 -567 2371 89 0 0 chr11 134514151 134514455 -16269098 + AluY SINE Alu 1 304 -7 512 328 120 16 chr11 134514975 134515292 -16268261 + L2 LINE L2 2904 3253 -19 1479 173 0 35 chr11 134515323 134515607 -16267946 + AluJo SINE Alu 15 288 -24 517 280 42 12 chr11 134515672 134515840 -16267713 + MIR SINE MIR 34 206 -56 187 354 110 0 chr11 134515946 134516028 -16267525 - L2 LINE L2 -53 3219 3129 863 139 15 0 chr11 134516031 134516168 -16267385 + L1MCa LINE L1 2048 2186 -4240 * 1466 227 12 12 chr11 134516148 134516491 -16267062 + L1MC1 LINE L1 5060 5402 -744 1131 184 0 71 chr11 134516491 134516730 -16266823 + AluJo SINE Alu 1 222 -90 201 74 0 0 chr11 134516741 134516768 -16266785 + (A)n Simple_repeat Simple_repeat 1 27 0 5717 147 27 5 chr11 134516768 134517691 -16265862 + L1MC1 LINE L1 5385 6327 -6 246 232 0 0 chr11 134518856 134518912 -16264641 + CT-rich Low_complexity Low_complexity 1 56 0 296 235 204 10 chr11 134519067 134519165 -16264388 - L2 LINE L2 -14 3258 3142 241 263 101 10 chr11 134520059 134520158 -16263395 - L3 LINE CR1 -625 952 845 444 302 99 5 chr11 134520746 134520948 -16262605 - MIR SINE MIR -5 257 37 305 266 63 56 chr11 134523232 134523457 -16260096 + MLT1K LTR MaLR 11 264 -324 405 371 58 27 chr11 134524056 134524350 -16259203 + L3 LINE CR1 31 333 -1244 2206 110 0 13 chr11 134524384 134524685 -16258868 - AluSg SINE Alu -13 297 1 217 280 11 21 chr11 134524691 134524784 -16258769 + L2 LINE L2 2780 2871 -443 1949 162 6 55 chr11 134525001 134525042 -16258511 + L1MB1 LINE L1 5800 5841 -327 2186 108 3 16 chr11 134525042 134525347 -16258206 + AluSx SINE Alu 11 311 -1 1949 162 6 55 chr11 134525347 134525670 -16257883 + L1MB1 LINE L1 5841 6146 -22 1180 165 169 4 chr11 134525798 134526064 -16257489 + MER33 DNA MER1_type 1 310 -14 2351 88 0 3 chr11 134526070 134526378 -16257175 - AluSc SINE Alu -2 307 1 1773 170 10 16 chr11 134526434 134526746 -16256807 - AluJb SINE Alu -1 311 2 225 287 8 124 chr11 134526749 134526878 -16256675 + L2 LINE L2 3200 3313 0 2207 83 20 30 chr11 134526884 134527186 -16256367 - AluY SINE Alu -12 299 1 801 169 25 12 chr11 134527405 134527565 -16255988 - MER104 DNA Tc2 -5 175 14 204 282 28 0 chr11 134528678 134528749 -16254804 - MER5A DNA MER1_type -46 143 71 * 339 302 50 44 chr11 134528736 134528918 -16254635 + L3 LINE CR1 1395 1577 0 3507 144 29 75 chr11 134529847 134530571 -16252982 + LTR8 LTR ERV1 1 691 0 1750 189 59 68 chr11 134531152 134531623 -16251930 + MLT1C LTR MaLR 1 467 0 244 177 81 0 chr11 134532236 134532298 -16251255 - MLT1K LTR MaLR -7 581 515 2237 130 12 15 chr11 134533036 134533374 -16250179 + MER1B DNA MER1_type 1 337 0 510 251 57 17 chr11 134533568 134533743 -16249810 + MIR SINE MIR 49 230 -32 208 139 0 0 chr11 134535590 134535626 -16247927 + (TTA)n Simple_repeat Simple_repeat 3 38 0 443 269 15 78 chr11 134535643 134535911 -16247642 - L1ME4a LINE L1 -23 6098 5848 2250 127 0 0 chr11 134537100 134537407 -16246146 - AluSx SINE Alu -5 307 1 557 276 97 102 chr11 134537644 134538192 -16245361 + MLT1K LTR MaLR 12 556 -32 405 294 63 63 chr11 134538662 134538883 -16244670 + L2 LINE L2 3050 3270 -2 4562 171 43 14 chr11 134539107 134539916 -16243637 + MER21B LTR ERV1 1 833 -30 1913 152 10 3 chr11 134540448 134540745 -16242808 - AluJb SINE Alu -13 299 1 425 299 43 0 chr11 134541597 134541761 -16241792 + MIR SINE MIR 63 233 -29 2134 71 45 4 chr11 134541955 134542265 -16241288 + AluY SINE Alu 1 321 0 317 321 93 12 chr11 134542895 134543057 -16240496 - MER5B DNA MER1_type -3 175 1 408 325 97 4 chr11 134543463 134543691 -16239862 + LTR16B LTR ERVL 45 293 -171 1895 169 3 0 chr11 134543794 134544084 -16239469 - AluJb SINE Alu -21 291 1 23 0 0 0 chr11 134544095 134544118 -16239435 + AT_rich Low_complexity Low_complexity 1 23 0 308 208 0 0 chr11 134547042 134547095 -16236458 + LTR16B LTR ERVL 399 451 -13 463 237 0 0 chr11 134547356 134547449 -16236104 - MIR SINE MIR -112 150 58 253 208 0 0 chr11 134547511 134547559 -16235994 + MIR SINE MIR 2 49 -213 384 299 55 16 chr11 134547638 134547765 -16235788 - L2 LINE L2 -5 3267 3136 214 293 120 23 chr11 134547889 134548022 -16235531 + L2 LINE L2 2939 3084 -188 3260 73 27 35 chr11 134548175 134548626 -16234927 - MLT2A2 LTR ERVL -6 447 1 287 326 82 15 chr11 134549417 134549552 -16234001 + MIR SINE MIR 113 256 -6 306 220 12 36 chr11 134550148 134550254 -16233299 + MER5A DNA MER1_type 4 118 -71 557 249 85 11 chr11 134550610 134550787 -16232766 - MIR SINE MIR -65 197 8 276 290 43 65 chr11 134551265 134551403 -16232150 + MER5B DNA MER1_type 3 137 -41 217 341 83 37 chr11 134551755 134551972 -16231581 - L3b LINE CR1 -70 1513 1287 1981 150 95 56 chr11 134553220 134553791 -16229762 - MER4A LTR ERV1 -19 446 1 397 79 0 32 chr11 134553806 134553869 -16229684 - MER4A-int LTR ERV1 -6 6592 6532 1412 292 40 58 chr11 134554384 134554627 -16228926 - MER4A-int LTR ERV1 -447 6675 6429 2049 126 126 26 chr11 134554627 134555016 -16228537 - MSTA LTR MaLR 0 428 1 1412 292 40 58 chr11 134555016 134555859 -16227694 - MER4A-int LTR ERV1 -693 6429 5633 325 268 12 67 chr11 134556198 134556362 -16227191 - MER4A-int LTR ERV1 -1784 2863 2709 265 185 19 0 chr11 134557100 134557154 -16226399 - MER4A-int LTR ERV1 -5794 804 750 299 315 28 65 chr11 134557271 134557487 -16226066 - MER4A-int LTR ERV1 -6182 576 369 806 176 34 44 chr11 134557512 134557956 -16225597 - MER4A-int LTR ERV1 -5927 671 109 2163 135 84 54 chr11 134558060 134558628 -16224925 - MER4A LTR ERV1 -20 445 1 1720 162 96 47 chr11 134558830 134559503 -16224050 + LTR48 LTR ERV1 1 707 0 1631 173 51 0 chr11 134559624 134559919 -16223634 + AluJo SINE Alu 1 310 -2 1817 230 69 64 chr11 134560703 134561215 -16222338 + L1MDb LINE L1 794 1302 -5104 2213 124 3 3 chr11 134561215 134561521 -16222032 + AluSx SINE Alu 1 306 -6 1817 230 69 64 chr11 134561521 134561852 -16221701 + L1MDb LINE L1 1302 1609 -4797 192 40 0 0 chr11 134561852 134561877 -16221676 + (GA)n Simple_repeat Simple_repeat 1 25 0 1817 230 69 64 chr11 134561877 134561917 -16221636 + L1MDb LINE L1 1609 1647 -4759 555 246 60 20 chr11 134561889 134562141 -16221412 + L1MDb LINE L1 3382 3643 -2763 * 313 243 19 61 chr11 134562198 134562412 -16221141 + L1MC5 LINE L1 7452 7656 -305 806 165 98 0 chr11 134562414 134562547 -16221006 + AluJo SINE Alu 2 147 -165 1134 173 5 0 chr11 134562550 134562747 -16220806 + L1PBa LINE L1 3 200 -6663 13668 118 90 14 chr11 134562747 134565297 -16218256 + L1PBa LINE L1 634 3410 -3452 2308 113 3 0 chr11 134565297 134565608 -16217945 - AluSx SINE Alu 0 312 1 13668 118 90 14 chr11 134565608 134565847 -16217706 + L1PBa LINE L1 3410 3629 -3233 506 163 23 0 chr11 134566196 134566282 -16217271 - AluJ SINE Alu -30 282 195 714 152 54 0 chr11 134566285 134566397 -16217156 - AluJ SINE Alu -191 121 4 2096 69 52 0 chr11 134566410 134566698 -16216855 - L1PB1 LINE L1 -1 6150 5848 185 305 221 26 chr11 134567836 134567990 -16215563 - MER5A DNA MER1_type -5 184 1 1809 135 73 43 chr11 134568067 134568394 -16215159 - MER1B DNA MER1_type 0 337 1 21 0 0 0 chr11 134568629 134568650 -16214903 + AT_rich Low_complexity Low_complexity 1 21 0 1218 185 28 0 chr11 134568650 134568866 -16214687 - AluJo SINE Alu -90 222 1 652 262 15 22 chr11 134569147 134569471 -16214082 + L1MC4a LINE L1 5703 6023 -141 1310 268 107 28 chr11 134569919 134570416 -16213137 + MLT1H LTR MaLR 1 536 -13 3155 141 15 23 chr11 134570511 134570572 -16212981 + MER34 LTR ERV1 29 89 -453 2330 86 3 3 chr11 134570572 134570874 -16212679 + AluSc SINE Alu 1 302 -7 3155 141 15 23 chr11 134570874 134571330 -16212223 + MER34 LTR ERV1 89 542 0 2538 89 0 3 chr11 134571458 134571794 -16211759 + L1PB1 LINE L1 5446 5780 -371 270 0 0 0 chr11 134571796 134571826 -16211727 + (TA)n Simple_repeat Simple_repeat 2 31 0 2255 90 32 6 chr11 134571826 134572137 -16211416 + L1PB1 LINE L1 5832 6150 -1 334 359 41 24 chr11 134572200 134572370 -16211183 - L2 LINE L2 -190 3082 2910 506 189 32 0 chr11 134572438 134572533 -16211020 + MER5A DNA MER1_type 9 106 -83 417 274 53 48 chr11 134572907 134573094 -16210459 + MIR SINE MIR 36 226 -36 2424 83 3 0 chr11 134574630 134574930 -16208623 + AluSp SINE Alu 1 301 -12 183 114 0 0 chr11 134574985 134575020 -16208533 + (T)n Simple_repeat Simple_repeat 1 35 0 2114 86 25 0 chr11 134575074 134575352 -16208201 - AluSg SINE Alu -25 285 1 357 230 95 0 chr11 134575447 134575521 -16208032 + MLT1J LTR MaLR 3 83 -428 1277 192 22 69 chr11 134575535 134575853 -16207700 - MLT1D LTR MaLR -198 307 5 340 248 30 12 chr11 134575856 134575975 -16207578 + MLT1J LTR MaLR 64 169 -281 271 213 149 21 chr11 134576069 134576163 -16207390 + MLT1J LTR MaLR 349 454 -57 566 308 35 15 chr11 134576202 134576400 -16207153 + L3 LINE CR1 396 597 -980 353 318 60 13 chr11 134576415 134576566 -16206987 + L3 LINE CR1 1026 1183 -394 733 141 107 16 chr11 134576779 134576900 -16206653 + FLAM_A SINE Alu 2 133 0 180 0 0 0 chr11 134577734 134577754 -16205799 + (CA)n Simple_repeat Simple_repeat 1 20 0 415 280 62 20 chr11 134578459 134578636 -16204917 - MIR SINE MIR -67 141 1 268 190 0 70 chr11 134579461 134579561 -16203992 + A-rich Low_complexity Low_complexity 2 94 0 687 221 36 71 chr11 134580042 134580322 -16203231 - HAL1 LINE L1 -1 2506 2237 268 232 21 42 chr11 134580542 134580637 -16202916 - HAL1 LINE L1 -404 2103 2011 938 308 62 75 chr11 134580684 134580735 -16202818 + L3 LINE CR1 763 813 -764 585 244 0 24 chr11 134580735 134580858 -16202695 + FLAM_A SINE Alu 2 121 -12 938 308 62 75 chr11 134580858 134581162 -16202391 + L3 LINE CR1 813 1119 -458 1854 166 0 7 chr11 134581162 134581463 -16202090 + AluJb SINE Alu 1 299 -13 938 308 62 75 chr11 134581463 134581504 -16202049 + L3 LINE CR1 1119 1159 -418 1991 110 0 43 chr11 134581504 134581805 -16201748 + AluSc SINE Alu 21 308 -1 938 308 62 75 chr11 134581805 134582046 -16201507 + L3 LINE CR1 1159 1394 -183 531 294 89 6 chr11 134582057 134582237 -16201316 + MLT1J LTR MaLR 1 195 -316 580 349 24 35 chr11 134582641 134582897 -16200656 + L2 LINE L2 2544 2797 -517 2611 209 34 12 chr11 134582897 134583391 -16200162 + MLT1D LTR MaLR 1 505 0 580 349 24 35 chr11 134583391 134583475 -16200078 + L2 LINE L2 2797 2880 -434 2588 87 104 60 chr11 134583898 134584311 -16199242 + MSTB1 LTR MaLR 2 432 0 4307 178 59 42 chr11 134584381 134584644 -16198909 - L1MB8 LINE L1 -5 6173 5916 1735 189 3 3 chr11 134584644 134584946 -16198607 + AluJo SINE Alu 1 302 -10 4307 178 59 42 chr11 134584946 134585922 -16197631 - L1MB8 LINE L1 -262 5916 4885 1367 131 0 36 chr11 134585922 134586143 -16197410 - L1PB2 LINE L1 -2 6149 5937 4307 178 59 42 chr11 134586143 134586616 -16196937 - L1MB8 LINE L1 -1293 4885 4422 398 342 63 8 chr11 134587272 134587509 -16196044 + MIR SINE MIR 1 250 -12 570 326 110 11 chr11 134587518 134587892 -16195661 + L1MEc LINE L1 9 419 -5977 434 294 102 29 chr11 134588208 134588544 -16195009 + L1MEc LINE L1 631 941 -5455 1641 211 71 45 chr11 134588544 134588781 -16194772 + MLT1D LTR MaLR 1 230 -275 1758 192 0 13 chr11 134588781 134588917 -16194636 + AluJb SINE Alu 1 137 -175 2110 124 0 0 chr11 134588917 134589208 -16194345 + AluSx SINE Alu 1 291 -21 1758 192 0 13 chr11 134589208 134589373 -16194180 + AluJb SINE Alu 137 298 -14 1641 211 71 45 chr11 134589373 134589627 -16193926 + MLT1D LTR MaLR 230 505 0 24 0 0 0 chr11 134589709 134589733 -16193820 + AT_rich Low_complexity Low_complexity 1 24 0 722 196 88 50 chr11 134589783 134590023 -16193530 + L1M4 LINE L1 4041 4289 -1857 3556 124 49 36 chr11 134590025 134590612 -16192941 - LTR49 LTR ERV1 0 595 1 3638 120 26 12 chr11 134590612 134591187 -16192366 - LTR49-int LTR ERV1 0 6331 5749 5268 165 15 9 chr11 134591187 134592080 -16191473 + MER4D LTR ERV1 1 898 -5 658 65 0 22 chr11 134592096 134592188 -16191365 - LTR49-int LTR ERV1 -580 5751 5662 289 176 186 49 chr11 134592188 134592290 -16191263 - LTR37A LTR ERV1 -307 119 4 2379 99 0 0 chr11 134592303 134592607 -16190946 - AluSq SINE Alu -9 304 1 9424 123 46 68 chr11 134592607 134594416 -16189137 - LTR49-int LTR ERV1 -774 5557 3789 610 168 11 0 chr11 134594417 134594512 -16189041 + AluJ/FLAM SINE Alu 2 97 -215 2423 117 51 57 chr11 134594512 134594752 -16188801 - LTR49 LTR ERV1 -17 578 341 2294 112 0 0 chr11 134594752 134595055 -16188498 + AluSx SINE Alu 1 303 -9 2423 117 51 57 chr11 134595055 134595285 -16188268 - LTR49 LTR ERV1 -254 341 111 1142 123 0 6 chr11 134595289 134595459 -16188094 - LTR49-int LTR ERV1 -2162 4169 4001 728 69 30 0 chr11 134595461 134595562 -16187991 - LTR49 LTR ERV1 -491 104 1 325 281 174 5 chr11 134595562 134595758 -16187795 + L1M4 LINE L1 4288 4516 -1630 243 294 78 72 chr11 134595939 134596244 -16187309 + L2 LINE L2 2712 3022 -250 2148 130 0 0 chr11 134596418 134596711 -16186842 + AluSx SINE Alu 6 298 -14 464 121 0 0 chr11 134597029 134597095 -16186458 + LTR35 LTR ERV1 1 66 -552 1293 209 23 63 chr11 134597098 134597493 -16186060 - MLT2B3 LTR ERVL -1 553 183 450 113 0 0 chr11 134597496 134597567 -16185986 - Alu SINE Alu -1 311 241 519 217 16 31 chr11 134597679 134597808 -16185745 + LTR35 LTR ERV1 492 618 0 646 234 23 0 chr11 134597814 134597942 -16185611 + MER45A DNA AcHobo 4 134 -44 245 238 127 0 chr11 134598129 134598192 -16185361 - MIR3 SINE MIR -27 181 111 523 258 64 78 chr11 134598542 134598837 -16184716 - L3 LINE CR1 -157 1420 1130 1553 141 14 71 chr11 134598941 134599224 -16184329 + AluJb SINE Alu 24 290 -22 230 235 73 0 chr11 134599287 134599355 -16184198 - MLT1K LTR MaLR 0 588 516 894 143 16 0 chr11 134599635 134599761 -16183792 - FLAM_C SINE Alu -5 128 1 28 0 0 0 chr11 134599769 134599797 -16183756 + AT_rich Low_complexity Low_complexity 1 28 0 2182 110 20 0 chr11 134599897 134600189 -16183364 - AluSx SINE Alu -14 298 1 30 45 0 0 chr11 134600302 134600346 -16183207 + AT_rich Low_complexity Low_complexity 1 44 0 193 282 0 0 chr11 134600583 134600622 -16182931 - L2 LINE L2 -173 3099 3061 252 290 0 14 chr11 134601224 134601293 -16182260 - L2 LINE L2 -4 3309 3242 444 238 23 126 chr11 134601320 134601412 -16182141 - MARNA DNA Mariner -32 554 495 2034 110 64 0 chr11 134601412 134601694 -16181859 - AluSg SINE Alu -10 300 1 444 238 23 126 chr11 134601694 134601815 -16181738 - MARNA DNA Mariner -91 495 363 834 187 75 11 chr11 134601869 134602056 -16181497 + L1ME2 LINE L1 5660 5858 -326 843 165 114 125 chr11 134602067 134602460 -16181093 + MER41B LTR ERV1 100 365 -113 599 250 62 0 chr11 134602511 134602671 -16180882 + MER66B LTR ERV1 307 476 -10 1048 188 71 19 chr11 134602678 134602976 -16180577 + L1ME2 LINE L1 5842 6177 -1 2162 110 0 0 chr11 134602993 134603274 -16180279 + AluSx SINE Alu 13 293 -19 373 232 39 127 chr11 134603283 134603464 -16180089 - MARNA DNA Mariner -350 236 72 4610 128 22 11 chr11 134605961 134606294 -16177259 - L1MB2 LINE L1 0 6171 5843 1800 181 3 0 chr11 134606294 134606592 -16176961 - AluJo SINE Alu -13 299 1 4610 128 22 11 chr11 134606592 134606975 -16176578 - L1MB2 LINE L1 -328 5843 5447 1045 227 72 38 chr11 134607087 134607492 -16176061 + L2 LINE L2 2737 3148 -165 201 132 0 0 chr11 134607530 134607568 -16175985 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 301 319 172 0 chr11 134607763 134607967 -16175586 + L2 LINE L2 2453 2691 -623 2126 169 58 46 chr11 134607970 134608144 -16175409 + MSTB LTR MaLR 7 177 -249 1762 163 7 10 chr11 134608144 134608444 -16175109 + AluJb SINE Alu 3 301 -11 2126 169 58 46 chr11 134608444 134608684 -16174869 + MSTB LTR MaLR 177 426 0 2198 115 8 77 chr11 134608815 134609011 -16174542 - MSTB LTR MaLR -62 364 207 2179 79 0 70 chr11 134609011 134609327 -16174226 - AluSc SINE Alu -15 294 1 2198 115 8 77 chr11 134609327 134609521 -16174032 - MSTB LTR MaLR -219 207 1 265 300 163 21 chr11 134609523 134609713 -16173840 + L2 LINE L2 2849 3065 -248 564 236 71 11 chr11 134609758 134609940 -16173613 - L1ME LINE L1 -336 5785 5593 23 54 0 0 chr11 134610744 134610781 -16172772 + GC_rich Low_complexity Low_complexity 1 37 0 256 239 86 74 chr11 134610881 134611044 -16172509 + L2 LINE L2 3092 3256 -57 213 94 0 0 chr11 134611220 134611252 -16172301 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 191 387 0 11 chr11 134611473 134611566 -16171987 - MIR3 SINE MIR -51 157 66 386 293 24 24 chr11 134612308 134612472 -16171081 + MER117 DNA MER1_type 34 197 0 1647 159 56 36 chr11 134612535 134612837 -16170716 - AluJb SINE Alu -4 308 1 2238 104 3 0 chr11 134614189 134614487 -16169066 - AluSx SINE Alu -12 300 2 703 288 123 51 chr11 134614642 134615055 -16168498 + MLT1K LTR MaLR 146 588 0 1799 174 0 7 chr11 134615969 134616263 -16167290 + AluJo SINE Alu 1 292 -20 298 181 0 197 chr11 134616455 134616533 -16167020 - MIR SINE MIR -1 261 216 2155 95 3 14 chr11 134616533 134616818 -16166735 + AluSq SINE Alu 1 282 -31 298 181 0 197 chr11 134616818 134616866 -16166687 - MIR SINE MIR -46 216 160 906 157 15 6 chr11 134616907 134617152 -16166401 + L1MC/D LINE L1 5184 5431 -743 499 257 114 40 chr11 134617213 134617388 -16166165 - MIR SINE MIR -70 192 5 2066 138 3 16 chr11 134617605 134617935 -16165618 + AluSx SINE Alu 1 326 0 898 272 98 10 chr11 134618063 134618488 -16165065 - LTR33 LTR ERVL -28 493 1 356 246 0 0 chr11 134619610 134619679 -16163874 + MIR SINE MIR 13 81 -181 238 367 106 35 chr11 134620336 134620535 -16163018 + L3b LINE CR1 1345 1557 -26 464 310 10 13 chr11 134620545 134620748 -16162805 + MIR SINE MIR 5 256 -6 238 320 103 19 chr11 134621550 134621706 -16161847 - L3 LINE CR1 -3 1574 1406 2899 229 77 24 chr11 134621723 134622161 -16161392 - L1ME2 LINE L1 -1 6163 5750 2313 109 0 0 chr11 134622161 134622465 -16161088 + AluSg SINE Alu 1 304 -6 2899 229 77 24 chr11 134622465 134622900 -16160653 - L1ME2 LINE L1 -414 5750 5244 478 280 101 48 chr11 134622917 134623124 -16160429 + MIR SINE MIR 30 247 -15 293 269 39 48 chr11 134623150 134623254 -16160299 - L3 LINE CR1 -316 1261 1159 3210 136 134 31 chr11 134623479 134623510 -16160043 + MER39 LTR ERV1 1 27 -680 1987 136 0 4 chr11 134623510 134623817 -16159736 + AluSx SINE Alu 5 310 0 3210 136 134 31 chr11 134623817 134624424 -16159129 + MER39 LTR ERV1 27 706 -1 2481 65 0 26 chr11 134624657 134624967 -16158586 + AluY SINE Alu 1 302 -9 915 192 45 5 chr11 134626089 134626287 -16157266 - MER3 DNA MER1_type -1 208 3 259 317 219 30 chr11 134628963 134629297 -16154256 - L2 LINE L2 -10 3262 2866 2267 91 0 0 chr11 134629352 134629638 -16153915 - AluSx SINE Alu -13 299 14 504 138 57 24 chr11 134630382 134630505 -16153048 + MER94 DNA DNA 7 133 -1 203 242 16 16 chr11 134630646 134630708 -16152845 - L3b LINE CR1 -200 1383 1322 339 292 77 23 chr11 134631550 134631680 -16151873 + MIR3 SINE MIR 69 187 -21 21 0 0 0 chr11 134632203 134632224 -16151329 + AT_rich Low_complexity Low_complexity 1 21 0 2548 45 3 0 chr11 134632516 134632803 -16150750 - AluY SINE Alu -23 288 1 315 85 0 0 chr11 134633898 134633945 -16149608 + (TG)n Simple_repeat Simple_repeat 2 48 0 508 269 93 23 chr11 134634123 134634339 -16149214 - MIR SINE MIR 0 262 32 2033 136 6 22 chr11 134636294 134636610 -16146943 + AluSx SINE Alu 1 311 -1 2056 145 0 0 chr11 134637147 134637444 -16146109 - AluJb SINE Alu -12 300 4 311 225 17 150 chr11 134637820 134637993 -16145560 + MIR SINE MIR 46 195 -67 406 283 130 62 chr11 134638509 134638816 -16144737 - L2 LINE L2 0 3272 2945 202 349 53 61 chr11 134639356 134639488 -16144065 - MIR SINE MIR -60 148 18 479 239 82 13 chr11 134639517 134639701 -16143852 - MIR SINE MIR -56 206 12 30 69 0 0 chr11 134640271 134640329 -16143224 + AT_rich Low_complexity Low_complexity 1 58 0 353 149 15 0 chr11 134640479 134640546 -16143007 - L1MA5 LINE L1 -39 6261 6194 222 235 25 17 chr11 134641977 134642096 -16141457 + (CGCGG)n Simple_repeat Simple_repeat 4 123 0 21 0 0 0 chr11 134642971 134642992 -16140561 + AT_rich Low_complexity Low_complexity 1 21 0 339 292 77 23 chr11 134643515 134643645 -16139908 - MIR3 SINE MIR -21 187 69 203 242 16 16 chr11 134644487 134644549 -16139004 + L3b LINE CR1 1322 1383 -200 504 138 57 24 chr11 134644690 134644813 -16138740 - MER94 DNA DNA -1 133 7 2267 91 0 0 chr11 134645558 134645844 -16137709 + AluSx SINE Alu 14 299 -13 259 317 219 30 chr11 134645899 134646233 -16137320 + L2 LINE L2 2866 3262 -10 915 192 45 5 chr11 134648909 134649107 -16134446 + MER3 DNA MER1_type 3 208 -1 2428 80 3 7 chr11 134650229 134650531 -16133022 - AluSg SINE Alu -9 301 1 411 303 0 66 chr11 134651784 134651936 -16131617 - MIR SINE MIR -70 192 51 465 345 67 60 chr11 134652083 134652413 -16131140 + L2 LINE L2 2864 3199 -73 2110 125 0 0 chr11 134652413 134652708 -16130845 - AluJo SINE Alu -4 308 14 465 345 67 60 chr11 134652708 134652780 -16130773 + L2 LINE L2 3199 3269 -3 196 329 51 0 chr11 134653013 134653092 -16130461 + MIR3 SINE MIR 111 193 -15 183 132 53 0 chr11 134654247 134654285 -16129268 + L2 LINE L2 3210 3249 -23 234 299 68 43 chr11 134654732 134654849 -16128704 + L3b LINE CR1 1343 1462 -121 1659 177 36 24 chr11 134654849 134655183 -16128370 - L1MB5 LINE L1 -6 6168 5831 2298 99 0 0 chr11 134655370 134655664 -16127889 - AluY SINE Alu -17 294 1 1930 61 0 0 chr11 134656855 134657084 -16126469 - AluY SINE Alu 0 311 83 2196 120 0 0 chr11 134658266 134658558 -16124995 - AluSx SINE Alu -20 292 1 385 256 102 6 chr11 134659013 134659189 -16124364 - MLT1J1 LTR MaLR -248 198 6 1776 160 0 45 chr11 134660513 134660826 -16122727 - AluJb SINE Alu -13 299 1 867 281 44 17 chr11 134660835 134661286 -16122267 - Charlie8 DNA MER1_type -2199 218 1 991 180 12 0 chr11 134661836 134662008 -16121545 + FRAM SINE Alu 1 174 -2 249 293 6 57 chr11 134662153 134662312 -16121241 - MIR SINE MIR -68 194 46 423 189 211 11 chr11 134662345 134662440 -16121113 - MER81 DNA DNA 0 114 1 1979 93 4 22 chr11 134662550 134662818 -16120735 + AluSp SINE Alu 40 302 -11 2313 119 0 6 chr11 134663448 134663759 -16119794 + AluSx SINE Alu 1 309 -3 429 243 84 9 chr11 134663897 134664004 -16119549 + MIR SINE MIR 22 136 -126 328 258 56 0 chr11 134664047 134664136 -16119417 + MER5A DNA MER1_type 16 109 -80 181 87 0 0 chr11 134664226 134664249 -16119304 + MIR SINE MIR 201 223 -39 1633 169 31 63 chr11 134664812 134665131 -16118422 + AluJb SINE Alu 1 309 -3 280 343 142 39 chr11 134665132 134665336 -16118217 + L3b LINE CR1 1176 1400 -183 313 290 81 40 chr11 134665533 134665657 -16117896 + MIR3 SINE MIR 15 143 -65 259 220 0 0 chr11 134665751 134665801 -16117752 - L2 LINE L2 0 3313 3264 245 175 0 0 chr11 134665940 134665980 -16117573 - MIR3 SINE MIR -3 205 166 230 360 35 0 chr11 134666381 134666467 -16117086 + L2 LINE L2 3174 3262 -10 724 106 0 30 chr11 134666522 134666654 -16116899 + (TCCC)n Simple_repeat Simple_repeat 4 131 0 1750 173 0 0 chr11 134666656 134666928 -16116625 - AluJo SINE Alu -40 272 1 2304 89 7 13 chr11 134667588 134667892 -16115661 + AluSq SINE Alu 5 306 -7 410 272 0 7 chr11 134668479 134668758 -16114795 + (TG)n Simple_repeat Simple_repeat 1 276 0 182 165 0 78 chr11 134668770 134668873 -16114680 + (CGTG)n Simple_repeat Simple_repeat 2 96 0 628 173 98 6 chr11 134669977 134670150 -16113403 + L1MA8 LINE L1 6100 6288 -3 231 146 0 0 chr11 134670184 134670225 -16113328 - MADE1 DNA Mariner -39 41 1 644 195 70 8 chr11 134673111 134673239 -16110314 - FRAM SINE Alu -30 146 11 1995 137 0 3 chr11 134674755 134675054 -16108499 - AluSx SINE Alu -14 298 1 502 272 33 33 chr11 134675393 134675577 -16107976 + MIR SINE MIR 77 260 -2 778 134 0 78 chr11 134676358 134676468 -16107085 + AluJo/FLAM SINE Alu 3 101 -201 2463 71 0 0 chr11 134676468 134676778 -16106775 - AluY SINE Alu -1 310 1 778 134 0 78 chr11 134676778 134676809 -16106744 + AluJo/FLAM SINE Alu 101 133 -169 315 85 0 0 chr11 134677873 134677920 -16105633 + (TG)n Simple_repeat Simple_repeat 2 48 0 503 269 93 23 chr11 134678098 134678314 -16105239 - MIR SINE MIR 0 262 32 2145 124 13 0 chr11 134680269 134680576 -16102977 + AluSx SINE Alu 1 311 -1 180 269 192 39 chr11 134680888 134680966 -16102587 - L3b LINE CR1 -131 1452 1363 1921 144 0 0 chr11 134681113 134681411 -16102142 - AluJb SINE Alu -11 301 4 312 225 17 150 chr11 134681787 134681960 -16101593 + MIR SINE MIR 46 195 -67 391 283 130 62 chr11 134682475 134682782 -16100771 - L2 LINE L2 0 3272 2945 209 349 53 61 chr11 134683322 134683454 -16100099 - MIR SINE MIR -60 148 18 478 239 82 13 chr11 134683483 134683667 -16099886 - MIR SINE MIR -56 206 12 30 69 0 0 chr11 134684237 134684295 -16099258 + AT_rich Low_complexity Low_complexity 1 58 0 341 147 15 15 chr11 134684445 134684513 -16099040 - L1MA5 LINE L1 -39 6261 6194 1595 176 0 0 chr11 134685969 134686241 -16097312 - AluJo SINE Alu -40 272 1 2166 88 7 13 chr11 134686901 134687206 -16096347 + AluSq SINE Alu 5 307 -6 410 276 0 7 chr11 134687793 134688072 -16095481 + (TG)n Simple_repeat Simple_repeat 1 276 0 182 165 0 78 chr11 134688084 134688187 -16095366 + (CGTG)n Simple_repeat Simple_repeat 2 96 0 628 173 98 6 chr11 134689291 134689464 -16094089 + L1MA8 LINE L1 6100 6288 -3 231 146 0 0 chr11 134689498 134689539 -16094014 - MADE1 DNA Mariner -39 41 1 644 195 70 8 chr11 134692156 134692284 -16091269 - FRAM SINE Alu -30 146 11 1995 137 0 3 chr11 134693800 134694099 -16089454 - AluSx SINE Alu -14 298 1 502 272 33 33 chr11 134694438 134694622 -16088931 + MIR SINE MIR 77 260 -2 1711 141 0 49 chr11 134695403 134695513 -16088040 + AluJb SINE Alu 3 117 -195 2377 71 0 0 chr11 134695513 134695822 -16087731 - AluY SINE Alu -1 310 2 1711 141 0 49 chr11 134695822 134696016 -16087537 + AluJb SINE Alu 117 292 -20 238 341 125 68 chr11 134696021 134696285 -16087268 + L2 LINE L2 2898 3176 -96 2566 155 39 2 chr11 134698256 134698721 -16084832 - L1MB3 LINE L1 -1 6182 5701 2164 113 0 3 chr11 134699503 134699804 -16083749 + AluSx SINE Alu 2 301 -11 230 303 21 49 chr11 134700015 134700157 -16083396 - L2 LINE L2 -212 3060 2923 210 344 11 0 chr11 134700262 134700352 -16083201 - L2 LINE L2 -528 2786 2696 265 304 27 0 chr11 134700388 134700500 -16083053 - L1MC/D LINE L1 -2084 5724 5610 1121 279 146 14 chr11 134700501 134700945 -16082608 + L2 LINE L2 2284 2786 -528 673 216 17 194 chr11 134700931 134701122 -16082431 + L2 LINE L2 2908 2985 -328 * 2130 110 0 0 chr11 134701122 134701422 -16082131 + AluSx SINE Alu 1 300 -12 673 216 17 194 chr11 134701422 134701652 -16081901 + L2 LINE L2 2985 3254 -59 421 231 70 0 chr11 134701668 134701850 -16081703 - L1MC/D LINE L1 -2208 5600 5366 1259 80 0 0 chr11 134701850 134702013 -16081540 - AluSg/x SINE Alu -15 294 132 1566 179 0 3 chr11 134702013 134702298 -16081255 - AluJo SINE Alu -3 309 26 276 234 27 36 chr11 134702324 134702338 -16081215 - L1MC/D LINE L1 -801 5345 5332 1887 120 0 0 chr11 134702338 134702597 -16080956 - AluSq SINE Alu -51 262 4 276 234 27 36 chr11 134702597 134702693 -16080860 - L1MC/D LINE L1 -814 5332 5236 1604 158 13 51 chr11 134704127 134704438 -16079115 - AluJo SINE Alu -12 300 2 312 324 37 42 chr11 134705171 134705387 -16078166 - L2 LINE L2 -223 3049 2835 2141 125 0 0 chr11 134707636 134707932 -16075621 + AluSx SINE Alu 1 296 -16 308 324 49 29 chr11 134708052 134708154 -16075399 + L2 LINE L2 3166 3269 -3 274 293 0 24 chr11 134708402 134708484 -16075069 + MER5A DNA MER1_type 3 82 -107 868 200 12 18 chr11 134709503 134709673 -16073880 + MER58A DNA MER1_type 37 205 -19 21 71 0 0 chr11 134710208 134710250 -16073303 + AT_rich Low_complexity Low_complexity 1 42 0 2351 209 38 16 chr11 134710253 134710517 -16073036 - L1MB7 LINE L1 -11 6173 5916 2721 91 6 3 chr11 134710517 134710878 -16072675 - THE1B LTR MaLR -2 362 1 2351 209 38 16 chr11 134710878 134711167 -16072386 - L1MB7 LINE L1 -268 5916 5608 567 62 0 0 chr11 134711167 134711248 -16072305 - Alu SINE Alu -1 311 231 1159 92 0 92 chr11 134711423 134711619 -16071934 - MSTB LTR MaLR -62 364 189 948 135 0 35 chr11 134711619 134711789 -16071764 - AluSc SINE Alu -15 294 131 292 237 132 28 chr11 134711896 134712251 -16071302 - L1M4c LINE L1 -3968 2678 2287 5804 229 65 26 chr11 134712262 134713032 -16070521 - L1M4c LINE L1 -4458 2187 1448 305 80 0 20 chr11 134713032 134713082 -16070471 + (TTG)n Simple_repeat Simple_repeat 2 50 0 5804 229 65 26 chr11 134713082 134713999 -16069554 - L1M4c LINE L1 -5197 1448 28 186 71 0 0 chr11 134714570 134714598 -16068955 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2069 111 0 0 chr11 134714600 134714879 -16068674 - AluSc SINE Alu -29 280 2 327 260 143 30 chr11 134715013 134715217 -16068336 + L1MB5 LINE L1 5538 5653 -468 966 267 82 70 chr11 134715366 134715868 -16067685 - MLT1J LTR MaLR -2 509 2 225 246 87 0 chr11 134716122 134716191 -16067362 + MER104 DNA Tc2 61 135 -45 665 247 6 6 chr11 134719495 134719669 -16063884 - MER5B DNA MER1_type -2 176 3 900 284 91 30 chr11 134720237 134720730 -16062823 - L2 LINE L2 -5 3308 2847 200 70 23 23 chr11 134720730 134720773 -16062780 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 2045 120 18 0 chr11 134720773 134721048 -16062505 - AluSx SINE Alu -1 326 5 900 284 91 30 chr11 134721048 134721114 -16062439 - L2 LINE L2 -465 2848 2708 934 280 34 46 chr11 134721217 134721631 -16061922 - L2 LINE L2 -597 2717 2309 404 189 23 68 chr11 134721726 134721858 -16061695 - L1MC4 LINE L1 -981 7061 6936 2219 113 0 3 chr11 134721877 134722169 -16061384 + AluSc SINE Alu 1 291 -18 2007 178 3 21 chr11 134722175 134722552 -16061001 - L1MB5 LINE L1 -8 6166 5797 22 0 0 0 chr11 134722555 134722577 -16060976 + AT_rich Low_complexity Low_complexity 1 22 0 2556 72 3 0 chr11 134724044 134724351 -16059202 - AluSc SINE Alu -1 308 1 834 19 0 39 chr11 134724519 134724622 -16058931 - AluY SINE Alu -17 294 196 1807 133 13 40 chr11 134725075 134725375 -16058178 + AluJb SINE Alu 1 292 -20 1926 151 12 12 chr11 134725375 134725706 -16057847 + L1MB5 LINE L1 5819 6149 -25 385 278 17 0 chr11 134728324 134728439 -16055114 + L2 LINE L2 3193 3309 -4 21 36 0 0 chr11 134728482 134728510 -16055043 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr11 134729828 134729860 -16053693 + AT_rich Low_complexity Low_complexity 1 32 0 310 214 125 101 chr11 134729864 134730032 -16053521 - L1MA10 LINE L1 0 6334 6163 22 35 0 0 chr11 134730032 134730061 -16053492 + AT_rich Low_complexity Low_complexity 1 29 0 335 222 160 49 chr11 134730064 134730100 -16053453 - L1MA10 LINE L1 0 6334 6299 2652 193 91 77 chr11 134730100 134730874 -16052679 - L1ME1 LINE L1 -27 6073 5280 1201 214 87 4 chr11 134730874 134731140 -16052413 + AluJb SINE Alu 1 288 -24 2652 193 91 77 chr11 134731140 134731241 -16052312 - L1ME1 LINE L1 -820 5280 5182 7040 231 70 84 chr11 134731241 134733293 -16050260 - L1ME1 LINE L1 -1174 4906 2826 1764 179 34 0 chr11 134733293 134733589 -16049964 + AluJb SINE Alu 1 306 -6 7040 231 70 84 chr11 134733589 134734334 -16049219 - L1ME1 LINE L1 -3254 2826 2072 2132 128 0 0 chr11 134734334 134734623 -16048930 - AluSx SINE Alu -23 289 1 7040 231 70 84 chr11 134734623 134734688 -16048865 - L1ME1 LINE L1 -4008 2072 2008 499 229 119 0 chr11 134734688 134734806 -16048747 - FLAM_A SINE Alu 0 133 2 7040 231 70 84 chr11 134734806 134736217 -16047336 - L1ME1 LINE L1 -4072 2008 720 2216 118 0 10 chr11 134736217 134736522 -16047031 + AluSx SINE Alu 1 302 -10 7040 231 70 84 chr11 134736522 134737190 -16046363 - L1ME1 LINE L1 -5360 720 44 2163 116 7 0 chr11 134737794 134738086 -16045467 - AluSx SINE Alu -14 298 5 206 61 0 30 chr11 134738254 134738287 -16045266 + (TAA)n Simple_repeat Simple_repeat 1 32 0 483 286 97 7 chr11 134738365 134738519 -16045034 - MIR3 SINE MIR -24 184 17 180 321 0 0 chr11 134740359 134740412 -16043141 - MIR3 SINE MIR -31 177 125 1230 150 129 54 chr11 134741534 134741814 -16041739 - AluJb SINE Alu -1 301 1 216 333 31 44 chr11 134742255 134742483 -16041070 - L2 LINE L2 -453 2861 2637 772 336 66 56 chr11 134742700 134743292 -16040261 - L3 LINE CR1 -44 1533 936 835 212 170 65 chr11 134743297 134743603 -16039950 - L1ME2 LINE L1 0 6164 5827 363 337 243 10 chr11 134743681 134743788 -16039765 - L3 LINE CR1 -697 880 799 2293 102 0 0 chr11 134743788 134744083 -16039470 - AluSg SINE Alu -15 295 1 363 337 243 10 chr11 134744083 134744482 -16039071 - L3 LINE CR1 -778 799 256 252 86 0 0 chr11 134744896 134744931 -16038622 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 1058 105 0 0 chr11 134745501 134745634 -16037919 + AluSq/x SINE Alu 1 133 -180 1757 160 3 29 chr11 134746307 134746613 -16036940 - AluJo SINE Alu -14 298 1 2085 227 134 82 chr11 134747043 134747916 -16035637 - L1MC4 LINE L1 0 8042 7216 215 31 31 0 chr11 134747916 134747948 -16035605 + (TTATA)n Simple_repeat Simple_repeat 4 36 0 2085 227 134 82 chr11 134747948 134747999 -16035554 - L1MC4 LINE L1 -826 7216 7169 2379 77 0 46 chr11 134747999 134748324 -16035229 + AluY SINE Alu 1 310 -1 2085 227 134 82 chr11 134748324 134748599 -16034954 - L1MC4 LINE L1 -873 7169 6779 1202 101 0 13 chr11 134749982 134750141 -16033412 - AluSc SINE Alu -152 157 1 357 303 0 66 chr11 134751392 134751544 -16032009 - MIR SINE MIR -70 192 51 365 347 64 64 chr11 134751691 134752024 -16031529 + L2 LINE L2 2864 3199 -73 2081 123 0 0 chr11 134752024 134752316 -16031237 - AluJo SINE Alu -7 305 14 365 347 64 64 chr11 134752316 134752388 -16031165 + L2 LINE L2 3198 3269 -3 188 241 19 0 chr11 134754339 134754393 -16029160 + L3b LINE CR1 1343 1397 -186 1678 174 36 24 chr11 134754456 134754790 -16028763 - L1MB5 LINE L1 -6 6168 5831 2315 92 0 3 chr11 134754977 134755271 -16028282 - AluSg SINE Alu -17 293 1 1930 57 0 0 chr11 134756462 134756691 -16026862 - AluY SINE Alu 0 311 83 2179 120 0 0 chr11 134757873 134758165 -16025388 - AluSx SINE Alu -20 292 1 409 256 102 6 chr11 134758620 134758796 -16024757 - MLT1J1 LTR MaLR -248 198 6 1741 160 0 45 chr11 134760120 134760433 -16023120 - AluJb SINE Alu -13 299 1 919 292 46 20 chr11 134760442 134760893 -16022660 - Charlie8 DNA MER1_type -1039 1378 1 964 180 12 0 chr11 134761443 134761615 -16021938 + FRAM SINE Alu 1 174 -2 216 282 16 58 chr11 134761760 134761919 -16021634 - MIR SINE MIR -68 194 46 405 189 211 11 chr11 134761952 134762047 -16021506 - MER81 DNA DNA 0 114 1 1990 86 4 22 chr11 134762157 134762424 -16021129 + AluSp SINE Alu 40 301 -12 2287 119 0 6 chr11 134763055 134763366 -16020187 + AluSx SINE Alu 1 309 -3 383 255 0 11 chr11 134763504 134763598 -16019955 + MIR SINE MIR 22 114 -148 285 258 56 0 chr11 134763654 134763743 -16019810 + MER5A DNA MER1_type 16 109 -80 1589 157 32 73 chr11 134764419 134764732 -16018821 + AluJb SINE Alu 1 300 -12 211 348 163 22 chr11 134764766 134764944 -16018609 + L3b LINE CR1 1198 1400 -183 268 290 81 40 chr11 134765141 134765265 -16018288 + MIR3 SINE MIR 15 143 -65 207 257 27 27 chr11 134765279 134765353 -16018200 + (TTCA)n Simple_repeat Simple_repeat 4 77 0 235 220 0 0 chr11 134765359 134765409 -16018144 - L2 LINE L2 0 3313 3264 228 175 0 0 chr11 134765548 134765588 -16017965 - MIR3 SINE MIR -3 205 166 2616 67 0 3 chr11 134766180 134766492 -16017061 - AluY SINE Alu 0 311 1 2189 185 66 21 chr11 134766492 134766919 -16016634 - L1M4 LINE L1 -563 6113 5624 1931 160 3 7 chr11 134766919 134767226 -16016327 - AluJb SINE Alu -6 306 1 2189 185 66 21 chr11 134767226 134767550 -16016003 - L1M4 LINE L1 -1052 5624 5316 1044 192 66 0 chr11 134767551 134767749 -16015804 - AluJo SINE Alu -14 298 88 4375 188 31 49 chr11 134767759 134768188 -16015365 - L1M4 LINE L1 -1312 5332 4897 2413 79 0 0 chr11 134768188 134768479 -16015074 + AluSg SINE Alu 1 291 -19 4375 188 31 49 chr11 134768479 134769160 -16014393 - L1M4 LINE L1 -1747 4897 4241 3619 226 70 35 chr11 134769165 134770344 -16013209 - L1M4 LINE L1 -2633 4011 2765 2193 91 61 55 chr11 134770344 134770706 -16012847 - THE1B LTR MaLR 0 364 1 3619 226 70 35 chr11 134770706 134771202 -16012351 - L1M4 LINE L1 -3879 2765 2287 5918 229 65 26 chr11 134771213 134771983 -16011570 - L1M4 LINE L1 -4458 2187 1448 305 80 0 20 chr11 134771983 134772033 -16011520 + (TTG)n Simple_repeat Simple_repeat 2 50 0 5918 229 65 26 chr11 134772033 134772950 -16010603 - L1M4 LINE L1 -5197 1448 28 186 71 0 0 chr11 134773521 134773549 -16010004 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2168 111 0 0 chr11 134773551 134773830 -16009723 - AluSc SINE Alu -29 280 2 340 260 143 30 chr11 134773964 134774168 -16009385 + L1MB5 LINE L1 5538 5653 -468 1107 262 82 70 chr11 134774319 134774819 -16008734 - MLT1J LTR MaLR -4 507 2 239 246 87 0 chr11 134775073 134775142 -16008411 + MER104 DNA Tc2 61 135 -45 698 247 6 6 chr11 134778445 134778619 -16004934 - MER5B DNA MER1_type -2 176 3 955 255 47 131 chr11 134779206 134779680 -16003873 - L2 LINE L2 -32 3281 2940 2029 120 18 0 chr11 134779680 134779998 -16003555 - AluSx SINE Alu 0 327 5 955 255 47 131 chr11 134779998 134780581 -16002972 - L2 LINE L2 -373 2940 2309 409 189 23 68 chr11 134780676 134780808 -16002745 - L1MC4 LINE L1 -981 7061 6936 2202 113 0 3 chr11 134780827 134781119 -16002434 + AluSc SINE Alu 1 291 -18 2099 178 3 21 chr11 134781125 134781502 -16002051 - L1MB5 LINE L1 -8 6166 5797 22 0 0 0 chr11 134781505 134781527 -16002026 + AT_rich Low_complexity Low_complexity 1 22 0 2527 78 0 0 chr11 134782994 134783301 -16000252 - AluSc SINE Alu -2 307 1 825 19 0 39 chr11 134783468 134783571 -15999982 - AluY SINE Alu -17 294 196 1824 133 13 40 chr11 134784024 134784324 -15999229 + AluJb SINE Alu 1 292 -20 1938 151 12 12 chr11 134784324 134784655 -15998898 + L1MB5 LINE L1 5819 6149 -25 418 278 17 0 chr11 134787273 134787388 -15996165 + L2 LINE L2 3193 3309 -4 21 36 0 0 chr11 134787431 134787459 -15996094 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr11 134788778 134788810 -15994743 + AT_rich Low_complexity Low_complexity 1 32 0 322 214 125 101 chr11 134788814 134788982 -15994571 - L1MA10 LINE L1 0 6334 6163 22 35 0 0 chr11 134788982 134789011 -15994542 + AT_rich Low_complexity Low_complexity 1 29 0 343 222 160 49 chr11 134789014 134789050 -15994503 - L1MA10 LINE L1 0 6334 6299 2697 193 91 77 chr11 134789050 134789824 -15993729 - L1ME1 LINE L1 -27 6073 5280 1331 207 87 4 chr11 134789824 134790090 -15993463 + AluJb SINE Alu 1 288 -14 2697 193 91 77 chr11 134790090 134790191 -15993362 - L1ME1 LINE L1 -820 5280 5182 7254 231 70 84 chr11 134790191 134792243 -15991310 - L1ME1 LINE L1 -1174 4906 2826 1752 179 34 0 chr11 134792243 134792539 -15991014 + AluJb SINE Alu 1 306 -6 7254 231 70 84 chr11 134792539 134793284 -15990269 - L1ME1 LINE L1 -3254 2826 2072 2109 128 0 0 chr11 134793284 134793573 -15989980 - AluSx SINE Alu -23 289 1 7254 231 70 84 chr11 134793573 134793638 -15989915 - L1ME1 LINE L1 -4008 2072 2008 540 229 119 0 chr11 134793638 134793756 -15989797 - FLAM_A SINE Alu 0 133 2 7254 231 70 84 chr11 134793756 134795167 -15988386 - L1ME1 LINE L1 -4072 2008 720 2201 118 0 10 chr11 134795167 134795472 -15988081 + AluSx SINE Alu 1 302 -10 7254 231 70 84 chr11 134795472 134796140 -15987413 - L1ME1 LINE L1 -5360 720 44 2143 117 7 0 chr11 134796744 134797035 -15986518 - AluSx SINE Alu -15 297 5 206 61 0 30 chr11 134797203 134797236 -15986317 + (TAA)n Simple_repeat Simple_repeat 1 32 0 535 286 97 7 chr11 134797314 134797468 -15986085 - MIR3 SINE MIR -24 184 17 194 321 0 0 chr11 134799308 134799361 -15984192 - MIR3 SINE MIR -31 177 125 1351 143 129 54 chr11 134800483 134800763 -15982790 - AluJb SINE Alu -1 301 1 272 333 31 44 chr11 134801204 134801432 -15982121 - L2 LINE L2 -453 2861 2637 185 320 47 41 chr11 134801470 134801642 -15981911 - L2 LINE L2 -860 2454 2282 919 336 66 56 chr11 134801649 134802241 -15981312 - L3 LINE CR1 -44 1533 936 774 226 170 65 chr11 134802246 134802552 -15981001 - L1ME2 LINE L1 0 6164 5827 486 337 243 10 chr11 134802630 134802737 -15980816 - L3 LINE CR1 -697 880 799 2270 102 0 0 chr11 134802737 134803032 -15980521 - AluSg SINE Alu -15 295 1 486 337 243 10 chr11 134803032 134803431 -15980122 - L3 LINE CR1 -778 799 256 252 86 0 0 chr11 134803845 134803880 -15979673 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 1049 105 0 0 chr11 134804450 134804583 -15978970 + AluSq/x SINE Alu 1 133 -179 1741 160 3 29 chr11 134805257 134805563 -15977990 - AluJo SINE Alu -14 298 1 2148 227 134 82 chr11 134805993 134806866 -15976687 - L1MC4 LINE L1 0 8042 7216 215 31 31 0 chr11 134806866 134806898 -15976655 + (TTATA)n Simple_repeat Simple_repeat 4 36 0 2148 227 134 82 chr11 134806898 134806949 -15976604 - L1MC4 LINE L1 -826 7216 7169 2444 74 0 43 chr11 134806949 134807273 -15976280 + AluY SINE Alu 1 310 -1 2148 227 134 82 chr11 134807273 134807548 -15976005 - L1MC4 LINE L1 -873 7169 6779 260 229 0 0 chr11 134809596 134809644 -15973909 - L2 LINE L2 -12 3301 3254 568 176 91 125 chr11 134810683 134810859 -15972694 - MER58A DNA MER1_type -28 196 27 358 270 197 7 chr11 134810874 134811026 -15972527 - MER5A DNA MER1_type 0 189 9 225 0 0 0 chr11 134811472 134811497 -15972056 + (A)n Simple_repeat Simple_repeat 1 25 0 1744 156 42 0 chr11 134814166 134814455 -15969098 - AluJo SINE Alu -11 301 1 574 266 13 25 chr11 134814753 134814911 -15968642 + MIR SINE MIR 13 168 -94 556 329 152 20 chr11 134815020 134815415 -15968138 + L3 LINE CR1 1130 1576 -1 339 305 0 51 chr11 134815707 134815825 -15967728 - L3 LINE CR1 -11 1566 1455 1465 156 21 126 chr11 134816717 134817050 -15966503 + AluJo SINE Alu 1 298 -4 1687 199 39 34 chr11 134817323 134817704 -15965849 + MLT1B LTR MaLR 8 390 0 475 301 32 13 chr11 134817897 134818053 -15965500 - MIR3 SINE MIR -43 165 7 273 259 59 12 chr11 134818461 134818546 -15965007 + MIR3 SINE MIR 72 160 -48 22 56 0 0 chr11 134819048 134819084 -15964469 + AT_rich Low_complexity Low_complexity 1 36 0 1509 230 75 22 chr11 134819140 134819540 -15964013 - L1ME1 LINE L1 -50 6116 5696 316 301 78 113 chr11 134819649 134819984 -15963569 + L2 LINE L2 2945 3267 -5 391 326 22 0 chr11 134820183 134820321 -15963232 - MIR SINE MIR -3 259 119 1809 166 3 0 chr11 134820520 134820804 -15962749 + AluJb SINE Alu 1 285 -27 237 350 42 0 chr11 134821450 134821570 -15961983 - MIR3 SINE MIR -7 201 77 2001 102 0 98 chr11 134821853 134822188 -15961365 + AluSx SINE Alu 1 302 -10 606 139 0 0 chr11 134822089 134822190 -15961363 + AluSg/x SINE Alu 204 304 -8 186 0 88 0 chr11 134823883 134823917 -15959636 + (TATAA)n Simple_repeat Simple_repeat 5 41 0 191 335 42 47 chr11 134823929 134824141 -15959412 - L2 LINE L2 -231 3041 2831 205 329 129 0 chr11 134824285 134824370 -15959183 - L2 LINE L2 -675 2639 2544 1753 150 3 14 chr11 134824583 134824870 -15958683 - L1PA15 LINE L1 -315 5850 5567 352 232 219 26 chr11 134825321 134825472 -15958081 + MER5A DNA MER1_type 10 189 0 297 0 0 0 chr11 134825899 134825932 -15957621 + (A)n Simple_repeat Simple_repeat 1 33 0 380 209 15 134 chr11 134826529 134826663 -15956890 + MER112 DNA MER1_type 6 123 -137 2292 120 0 0 chr11 134827045 134827353 -15956200 - AluSx SINE Alu -4 308 1 220 188 43 43 chr11 134827457 134827526 -15956027 - MIR3 SINE MIR -3 205 137 804 242 95 64 chr11 134827661 134827711 -15955842 - MER113 DNA MER1_type? -52 469 422 1959 156 0 13 chr11 134827711 134828013 -15955540 - AluJb SINE Alu -14 298 1 804 242 95 64 chr11 134828013 134828413 -15955140 - MER113 DNA MER1_type? -99 422 5 360 280 62 30 chr11 134829600 134829769 -15953784 - MIR SINE MIR -52 210 41 197 286 16 0 chr11 134831486 134831549 -15952004 + MIR SINE MIR 78 141 -67 929 173 16 5 chr11 134831581 134831766 -15951787 + MIR SINE MIR 2 188 -74 218 184 20 0 chr11 134832197 134832246 -15951307 - MIR SINE MIR -124 138 89 220 78 0 109 chr11 134834038 134834102 -15949451 + (TTTTA)n Simple_repeat Simple_repeat 4 60 0 270 174 0 0 chr11 134834108 134834154 -15949399 - MADE1 DNA Mariner -34 46 1 180 0 0 0 chr11 134834229 134834249 -15949304 + (CAT)n Simple_repeat Simple_repeat 2 21 0 247 321 102 3 chr11 134834482 134834616 -15948937 + MIR SINE MIR 6 147 -62 * 274 311 44 37 chr11 134834614 134834749 -15948804 - L2 LINE L2 0 3272 3137 283 293 98 15 chr11 134838618 134838751 -15944802 + L2 LINE L2 3168 3311 -2 216 280 20 60 chr11 134839263 134839363 -15944190 - MIR SINE MIR -79 183 88 1020 179 0 0 chr11 134840025 134840193 -15943360 + AluJb SINE Alu 133 300 -12 2925 183 14 6 chr11 134840826 134841344 -15942209 + Tigger7 DNA MER2_type 1 522 -1965 305 244 70 12 chr11 134841343 134841429 -15942124 + Tigger7 DNA MER2_type 2396 2486 -1 * 411 313 76 27 chr11 134841460 134841684 -15941869 - MIR SINE MIR -1 261 27 2030 142 3 6 chr11 134841869 134842180 -15941373 - AluSx SINE Alu -2 310 1 263 307 29 58 chr11 134842185 134842426 -15941127 - MARNA DNA Mariner -38 548 315 1590 164 32 18 chr11 134843040 134843356 -15940197 - AluJb SINE Alu 0 320 1 373 238 0 0 chr11 134844762 134844842 -15938711 - HAL1 LINE L1 -945 1562 1483 758 192 0 0 chr11 134844862 134844987 -15938566 - FLAM_A SINE Alu -8 125 1 23 0 0 0 chr11 134846373 134846396 -15937157 + AT_rich Low_complexity Low_complexity 1 23 0 1389 151 93 19 chr11 134846407 134846665 -15936888 - AluJo SINE Alu -30 282 6 229 211 0 0 chr11 134847097 134847149 -15936404 + (TA)n Simple_repeat Simple_repeat 2 53 0 7824 88 6 18 chr11 134847434 134848519 -15935034 + MER11C LTR ERVK 1 1071 0 23 33 0 0 chr11 134848940 134848970 -15934583 + AT_rich Low_complexity Low_complexity 1 30 0 315 299 163 0 chr11 134849477 134849624 -15933929 - L2 LINE L2 0 3272 3102 2287 103 0 3 chr11 134851813 134852114 -15931439 + AluSx SINE Alu 1 300 -12 229 234 125 70 chr11 134852152 134852280 -15931273 - MIR SINE MIR -109 153 19 430 335 0 30 chr11 134853567 134853734 -15929819 - MIR3 SINE MIR -31 177 16 1109 176 53 154 chr11 134854622 134854998 -15928555 - MLT1A2 LTR MaLR -6 368 31 423 134 45 0 chr11 134855033 134855100 -15928453 + MLT1A1 LTR MaLR 270 339 -26 230 192 0 77 chr11 134856137 134856215 -15927338 - MER5C DNA MER1_type -252 72 1 212 258 16 16 chr11 134856623 134856685 -15926868 - L3 LINE CR1 -73 1504 1443 21 57 0 0 chr11 134858173 134858208 -15925345 + AT_rich Low_complexity Low_complexity 1 35 0 641 266 45 55 chr11 134858611 134859029 -15924524 - L1MEd LINE L1 -4862 1257 844 1140 221 3 45 chr11 134859088 134859400 -15924153 - AluJb SINE Alu -3 299 1 2013 125 17 3 chr11 134859414 134859703 -15923850 - AluSx SINE Alu -14 298 6 232 264 142 0 chr11 134861596 134861702 -15921851 + MIR SINE MIR 74 194 -68 1974 153 0 7 chr11 134863087 134863388 -15920165 - AluJb SINE Alu -13 299 1 2053 135 3 0 chr11 134863699 134863988 -15919565 + AluJo SINE Alu 4 293 -19 342 0 0 0 chr11 134863995 134864033 -15919520 + (CA)n Simple_repeat Simple_repeat 2 39 0 742 245 77 120 chr11 134864109 134864709 -15918844 - L1MC4a LINE L1 -1760 6048 5475 763 217 23 6 chr11 134865268 134865443 -15918110 - MER5B DNA MER1_type 0 178 1 794 276 10 0 chr11 134865452 134865644 -15917909 + MER58A DNA MER1_type 1 194 -30 825 225 11 42 chr11 134865659 134865850 -15917703 - MLT2D LTR ERVL -4 410 226 * 897 216 66 33 chr11 134865809 134866101 -15917452 - MLT1B LTR MaLR -83 291 1 425 323 45 9 chr11 134866177 134866400 -15917153 + MIR SINE MIR 32 262 0 213 310 62 44 chr11 134867063 134867143 -15916410 + L2 LINE L2 3199 3283 -30 1969 183 18 25 chr11 134867143 134867536 -15916017 - MLT1B LTR MaLR 0 390 1 213 310 62 44 chr11 134867536 134867568 -15915985 + L2 LINE L2 3283 3313 0 538 170 10 0 chr11 134868902 134869002 -15914551 + MER5A DNA MER1_type 9 109 -80 876 260 68 37 chr11 134871788 134872142 -15911411 - HAL1 LINE L1 -452 2055 1691 4256 263 101 31 chr11 134872204 134873981 -15909572 - HAL1 LINE L1 -606 1901 1 23 54 0 0 chr11 134874069 134874106 -15909447 + AT_rich Low_complexity Low_complexity 1 37 0 201 321 12 24 chr11 134875479 134875563 -15907990 + MER5A DNA MER1_type 39 121 -68 2048 126 7 13 chr11 134875933 134876242 -15907311 - AluSx SINE Alu -3 309 3 180 111 0 0 chr11 134877508 134877535 -15906018 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2367 88 16 0 chr11 134877747 134878053 -15905500 + AluSp SINE Alu 1 311 -2 301 282 24 0 chr11 134878473 134878558 -15904995 + L3 LINE CR1 626 712 -865 196 310 86 17 chr11 134878631 134878747 -15904806 - MIR SINE MIR -31 231 108 210 300 12 12 chr11 134878814 134878894 -15904659 + L3 LINE CR1 773 852 -725 289 344 221 9 chr11 134879034 134879374 -15904179 - L3 LINE CR1 -979 598 187 5324 54 6 10 chr11 134879382 134880071 -15903482 - L1PA2 LINE L1 -2 6153 5468 871 146 23 0 chr11 134880073 134880203 -15903350 - FLAM_A SINE Alu 0 133 1 354 378 7 0 chr11 134880438 134880581 -15902972 + L2 LINE L2 3162 3305 -8 1494 203 54 46 chr11 134881083 134881452 -15902101 - MER87 LTR ERV1 -169 372 1 881 237 90 4 chr11 134881456 134881701 -15901852 - MLT1E2 LTR MaLR -338 288 23 295 315 155 14 chr11 134882267 134882480 -15901073 - MIR SINE MIR 0 262 20 252 0 0 0 chr11 134882828 134882856 -15900697 + (GGCTG)n Simple_repeat Simple_repeat 4 31 0 918 143 0 0 chr11 134883424 134883557 -15899996 - AluSq/x SINE Alu -180 133 1 1595 182 14 17 chr11 134884412 134884709 -15898844 - AluJb SINE Alu -16 296 1 283 289 44 0 chr11 134884868 134884958 -15898595 + MARNA DNA Mariner 478 571 -15 498 250 50 0 chr11 134887218 134887338 -15896215 - MIR SINE MIR -129 133 8 222 262 33 0 chr11 134887424 134887485 -15896068 + L2 LINE L2 3202 3264 -49 307 313 62 19 chr11 134888254 134888414 -15895139 - MIR SINE MIR -3 259 93 275 294 83 9 chr11 134889035 134889144 -15894409 - MIR SINE MIR -142 120 4 2435 100 3 0 chr11 134890345 134890656 -15892897 + AluSx SINE Alu 1 312 0 181 321 0 0 chr11 134891705 134891761 -15891792 + L2 LINE L2 3217 3272 0 310 326 163 5 chr11 134892090 134892286 -15891267 - MIR SINE MIR -17 245 19 418 336 43 24 chr11 134892376 134892584 -15890969 - MIR SINE MIR -34 228 17 237 312 75 0 chr11 134892629 134892722 -15890831 - L1ME4a LINE L1 -2 6119 6020 811 263 157 3 chr11 134892809 134893128 -15890425 - L1ME4a LINE L1 -222 5899 5532 320 323 24 8 chr11 134894368 134894495 -15889058 - MIR SINE MIR -114 148 20 5360 106 17 22 chr11 134895221 134896004 -15887549 - MER4E LTR ERV1 0 779 1 538 254 119 62 chr11 134896302 134896704 -15886849 - MLT1J LTR MaLR -2 509 85 229 219 94 16 chr11 134896711 134896775 -15886778 - MLT1L LTR MaLR -542 73 5 751 276 55 41 chr11 134897647 134897991 -15885562 + L1MC4a LINE L1 5627 5975 -1833 837 239 41 18 chr11 134898674 134898892 -15884661 + MER58A DNA MER1_type 1 223 -1 196 373 68 17 chr11 134900482 134900600 -15882953 - MIR SINE MIR -20 242 119 301 311 151 14 chr11 134901811 134902023 -15881530 + L1MC/D LINE L1 5539 5779 -2029 2244 116 19 35 chr11 134902333 134902703 -15880850 - THE1B LTR MaLR 0 364 1 329 267 44 0 chr11 134904027 134904117 -15879436 + MER103 DNA DNA 23 116 -50 1911 128 8 67 chr11 134906726 134907084 -15876469 - MER1B DNA MER1_type 0 337 1 195 139 0 0 chr11 134908167 134908203 -15875350 + (A)n Simple_repeat Simple_repeat 1 36 0 23 54 0 0 chr11 134909684 134909721 -15873832 + AT_rich Low_complexity Low_complexity 1 37 0 200 158 18 0 chr11 134914094 134914151 -15869402 + (TA)n Simple_repeat Simple_repeat 2 59 0 207 276 86 48 chr11 134914228 134914333 -15869220 - MIR SINE MIR -148 114 6 492 269 27 13 chr11 134915308 134915457 -15868096 + MARNA DNA Mariner 315 465 -121 965 229 48 8 chr11 134915476 134915717 -15867836 - MIR SINE MIR -16 246 7 3635 49 0 7 chr11 134915840 134916291 -15867262 - LTR7 LTR ERV1 -2 448 1 2606 77 48 13 chr11 134916291 134916670 -15866883 - HERVH LTR ERV1 0 7713 7322 1388 139 19 0 chr11 134916668 134916884 -15866669 - HERVH LTR ERV1 -1894 5819 5600 * 8251 116 3 6 chr11 134916885 134918612 -15864941 - HERVH LTR ERV1 -1858 5233 3492 991 127 7 0 chr11 134918602 134918752 -15864801 - HERVH LTR ERV1 -4423 3290 3140 * 16378 98 22 21 chr11 134918731 134921597 -15861956 - HERVH LTR ERV1 -4718 2995 1 3453 71 0 7 chr11 134921599 134922050 -15861503 - LTR7 LTR ERV1 -2 448 1 261 215 141 33 chr11 134922055 134922176 -15861377 - L1ME4a LINE L1 -28 6093 5960 825 109 0 16 chr11 134923032 134923160 -15860393 + AluY SINE Alu 184 309 -2 375 318 19 0 chr11 134923419 134923526 -15860027 - L2 LINE L2 -3 3269 3161 1467 153 5 0 chr11 134924576 134924792 -15858761 + AluSx SINE Alu 1 217 -95 23 0 0 0 chr11 134924807 134924830 -15858723 + AT_rich Low_complexity Low_complexity 1 23 0 1503 229 95 22 chr11 134925444 134925884 -15857669 - MLT2B1 LTR ERVL -29 445 1 1205 177 131 27 chr11 134926465 134926750 -15856803 - AluJb SINE Alu 0 312 1 675 251 125 86 chr11 134926776 134927265 -15856288 - MLT1J LTR MaLR -3 508 1 215 268 52 21 chr11 134927475 134927572 -15855981 + MIR SINE MIR 111 210 -52 2148 99 41 3 chr11 134927572 134927866 -15855687 - AluSx SINE Alu -7 305 1 266 337 46 5 chr11 134928193 134928389 -15855164 - L2 LINE L2 -824 2490 2287 542 242 32 32 chr11 134928390 134928576 -15854977 - L2 LINE L2 -1 3312 3127 427 277 107 0 chr11 134929012 134929189 -15854364 + MIR SINE MIR 2 197 -65 2015 175 23 0 chr11 134929802 134930151 -15853402 - MLT1A1 LTR MaLR -8 357 1 190 200 0 0 chr11 134933475 134933515 -15850038 + L2 LINE L2 3222 3261 -11 195 42 0 0 chr11 134934890 134934914 -15848639 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 256 282 34 51 chr11 134936350 134936467 -15847086 - MER5B DNA MER1_type -60 118 4 200 246 130 14 chr11 134936488 134936557 -15846996 - MIR3 SINE MIR -49 159 83 2194 140 12 3 chr11 134936736 134936813 -15846740 - MER2 DNA MER2_type 0 345 270 300 53 0 0 chr11 134936813 134936851 -15846702 + (TA)n Simple_repeat Simple_repeat 2 39 0 2194 140 12 3 chr11 134936851 134937109 -15846444 - MER2 DNA MER2_type -75 270 7 539 191 26 26 chr11 134937721 134937836 -15845717 + MIR3 SINE MIR 82 196 -12 610 250 127 39 chr11 134938227 134938511 -15845042 + L1MC4 LINE L1 7600 7908 -134 2125 93 22 56 chr11 134939396 134939719 -15843834 - AluSx SINE Alu 0 312 1 360 368 36 0 chr11 134940036 134940202 -15843351 + L2 LINE L2 3101 3272 0 227 286 0 0 chr11 134942425 134942481 -15841072 + L2 LINE L2 3215 3270 -2 951 275 109 27 chr11 134942879 134943327 -15840226 - L2 LINE L2 -863 2451 1967 419 101 29 0 chr11 134943508 134943577 -15839976 + GA-rich Low_complexity Low_complexity 2 72 0 212 224 271 0 chr11 134945008 134945093 -15838460 - MIR SINE MIR -67 141 34 2072 122 27 7 chr11 134945783 134946077 -15837476 + AluSx SINE Alu 1 300 -12 461 261 55 24 chr11 134946175 134946340 -15837213 - MLT1I LTR MaLR -6 403 234 392 235 181 69 chr11 134946721 134946925 -15836628 - MIR SINE MIR -17 245 19 207 69 0 0 chr11 134948541 134948570 -15834983 + (T)n Simple_repeat Simple_repeat 1 29 0 264 238 48 12 chr11 134952428 134952512 -15831041 + MIR SINE MIR 173 259 -3 462 327 96 28 chr11 134952592 134953155 -15830398 + L2 LINE L2 2013 2613 -701 365 363 93 49 chr11 134953274 134953660 -15829893 + L2 LINE L2 2870 3272 0 270 255 160 0 chr11 134953668 134953762 -15829791 - L3 LINE CR1 -858 719 611 2272 219 26 65 chr11 134953813 134954471 -15829082 - L1ME2 LINE L1 -9 6224 5593 327 232 286 0 chr11 134954699 134954811 -15828742 - L1ME2 LINE L1 -639 5596 5453 198 0 0 0 chr11 134954837 134954859 -15828694 + (TA)n Simple_repeat Simple_repeat 1 22 0 4612 232 43 65 chr11 134954887 134955562 -15827991 - L1ME2 LINE L1 -922 5293 4605 2097 120 0 28 chr11 134955562 134955883 -15827670 + AluSx SINE Alu 1 313 0 4612 232 43 65 chr11 134955883 134957001 -15826552 - L1ME2 LINE L1 -1610 4605 3538 3105 283 63 41 chr11 134957011 134958747 -15824806 - L1ME2 LINE L1 -4573 1823 49 314 349 88 5 chr11 134958868 134959060 -15824493 - L3 LINE CR1 -1171 406 199 415 323 7 90 chr11 134959107 134959386 -15824167 - MIR SINE MIR -4 258 3 1672 102 4 4 chr11 134959526 134959751 -15823802 - AluSg/x SINE Alu -6 306 82 189 274 0 113 chr11 134960235 134960341 -15823212 - L2 LINE L2 -264 3008 2915 1608 154 99 7 chr11 134960965 134961238 -15822315 + AluSx SINE Alu 1 298 -14 201 277 36 48 chr11 134961700 134961783 -15821770 - L2 LINE L2 -19 3294 3213 1206 194 11 11 chr11 134961904 134962177 -15821376 - Charlie5 DNA MER1_type 0 2624 2352 518 209 307 0 chr11 134962175 134962328 -15821225 - Charlie5 DNA MER1_type -2412 200 1 * 397 252 44 22 chr11 134962456 134962591 -15820962 + MIR SINE MIR 119 256 -6 207 253 13 27 chr11 134963261 134963336 -15820217 - MIR SINE MIR -98 164 91 5983 117 7 9 chr11 134964511 134964840 -15818713 - L1PA16 LINE L1 -9 6157 5829 2156 127 3 3 chr11 134964840 134965148 -15818405 - AluSq SINE Alu -5 308 1 5983 117 7 9 chr11 134965148 134966274 -15817279 - L1PA16 LINE L1 -337 5829 4705 704 168 64 59 chr11 134967070 134967363 -15816190 + MER33 DNA MER1_type 1 363 0 2166 134 0 0 chr11 134968917 134969215 -15814338 - AluSx SINE Alu -14 298 1 357 274 84 72 chr11 134969223 134969570 -15813983 - L1ME LINE L1 -297 5824 5474 1387 139 50 131 chr11 134969647 134969676 -15813877 - Charlie4a DNA MER1_type -1507 454 424 2092 129 0 3 chr11 134969676 134969997 -15813556 - AluSx SINE Alu 0 320 1 1387 139 50 131 chr11 134969997 134970447 -15813106 - Charlie4a DNA MER1_type -1537 424 17 238 273 91 0 chr11 134970485 134970562 -15812991 - MIR3 SINE MIR -14 194 111 926 263 14 0 chr11 134970729 134970946 -15812607 + MER58A DNA MER1_type 5 224 0 315 237 130 68 chr11 134971201 134971269 -15812284 + L2 LINE L2 3126 3188 -125 2594 65 0 0 chr11 134971269 134971575 -15811978 + AluY SINE Alu 1 306 -5 315 237 130 68 chr11 134971575 134971683 -15811870 + L2 LINE L2 3188 3313 0 201 395 44 0 chr11 134971842 134971956 -15811597 + L2 LINE L2 3195 3313 0 1860 160 14 0 chr11 134972095 134972382 -15811171 + AluJb SINE Alu 1 291 -21 1114 129 0 12 chr11 134972382 134972553 -15811000 - L1MA5A LINE L1 -12 6285 6117 216 0 0 0 chr11 134972553 134972577 -15810976 + (TA)n Simple_repeat Simple_repeat 2 25 0 234 0 0 0 chr11 134972577 134972603 -15810950 + (T)n Simple_repeat Simple_repeat 1 26 0 1246 51 0 0 chr11 134972603 134972741 -15810812 - AluSq/x SINE Alu -175 138 1 243 130 109 0 chr11 134972742 134972788 -15810765 - L1MA5A LINE L1 -183 6114 6064 2284 113 0 0 chr11 134973833 134974135 -15809418 - AluSx SINE Alu -10 302 1 2247 94 13 13 chr11 134974150 134974458 -15809095 - AluY SINE Alu -3 308 1 312 27 0 0 chr11 134975802 134975839 -15807714 + (TG)n Simple_repeat Simple_repeat 1 37 0 896 262 16 48 chr11 134976371 134976619 -15806934 + MIR SINE MIR 2 241 -21 327 312 282 6 chr11 134976717 134976887 -15806666 - MIR SINE MIR -2 260 44 2071 100 50 0 chr11 134976890 134977171 -15806382 + AluSx SINE Alu 14 308 -4 301 357 31 0 chr11 134977462 134977591 -15805962 + MIR SINE MIR 107 239 -23 305 292 108 0 chr11 134978911 134979031 -15804522 - MIR SINE MIR -12 250 118 463 282 139 5 chr11 134979219 134979426 -15804127 + MIR SINE MIR 19 252 -10 282 308 47 76 chr11 134979503 134979714 -15803839 + L2 LINE L2 2554 2758 -556 228 326 55 44 chr11 134979910 134980146 -15803407 + L2 LINE L2 2916 3199 -73 736 240 18 0 chr11 134981368 134981539 -15802014 - MER5B DNA MER1_type 0 178 5 236 364 8 17 chr11 134982353 134982471 -15801082 - MIR3 SINE MIR -78 130 14 254 301 123 55 chr11 134982976 134983122 -15800431 - L2 LINE L2 -4 3268 3113 2170 133 0 3 chr11 134984739 134985041 -15798512 - AluSq SINE Alu -12 301 1 443 309 83 11 chr11 134986961 134987157 -15796396 + MIR SINE MIR 3 212 -50 202 260 13 52 chr11 134987719 134987796 -15795757 + L2 LINE L2 3187 3260 -12 277 217 48 0 chr11 134988063 134988146 -15795407 - L1ME4a LINE L1 0 6121 6035 676 265 62 25 chr11 134988229 134988587 -15794966 - L1ME4a LINE L1 -239 5882 5512 27 62 0 0 chr11 134988670 134988718 -15794835 + AT_rich Low_complexity Low_complexity 1 48 0 41 87 0 0 chr11 134989174 134989278 -15794275 + AT_rich Low_complexity Low_complexity 1 104 0 442 345 20 20 chr11 134989475 134989672 -15793881 - MIR3 SINE MIR -6 202 6 237 301 24 82 chr11 134991308 134991468 -15792085 + L1ME LINE L1 5457 5604 -517 2134 123 3 0 chr11 134991468 134991751 -15791802 + AluSx SINE Alu 1 287 -25 276 53 0 0 chr11 134991751 134991789 -15791764 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 2134 123 3 0 chr11 134991789 134991815 -15791738 + AluSx SINE Alu 287 311 -1 237 301 24 82 chr11 134991815 134991860 -15791693 + L1ME LINE L1 5604 5650 -471 198 398 56 41 chr11 134992139 134992478 -15791075 + L2 LINE L2 2808 3151 -121 772 179 0 0 chr11 134992488 134992611 -15790942 + FLAM_C SINE Alu 1 123 -10 465 193 9 26 chr11 134992720 134992834 -15790719 + MLT1H1 LTR MaLR 32 143 -412 407 247 226 8 chr11 134992843 134993022 -15790531 + MLT1H1 LTR MaLR 74 288 -297 395 78 16 0 chr11 134993043 134993107 -15790446 + (GA)n Simple_repeat Simple_repeat 2 66 0 473 210 215 15 chr11 134993120 134993315 -15790238 + MLT1H1 LTR MaLR 322 555 0 240 209 0 0 chr11 134993319 134993362 -15790191 + L2 LINE L2 3267 3309 -4 550 183 53 0 chr11 134994385 134994516 -15789037 - L1MB4 LINE L1 -3 6177 6040 462 329 44 40 chr11 134994852 134995308 -15788245 + MLT1K LTR MaLR 129 586 -2 273 172 234 0 chr11 134995700 134995764 -15787789 - Tigger5 DNA MER2_type -2244 79 1 864 317 154 12 chr11 134996141 134996564 -15786989 + L3 LINE CR1 995 1477 -100 418 315 0 24 chr11 134997042 134997169 -15786384 - MIR SINE MIR -115 147 24 243 294 35 12 chr11 134997437 134997522 -15786031 + MIR SINE MIR 126 212 -50 348 266 196 14 chr11 134997983 134998126 -15785427 - MER5B DNA MER1_type -3 175 7 1648 299 161 21 chr11 134998203 134999479 -15784074 + L2 LINE L2 1842 3308 -5 279 294 123 44 chr11 134999959 135000187 -15783366 + L1MC/D LINE L1 5575 5820 -1988 309 51 0 0 chr11 135000512 135000551 -15783002 + (GA)n Simple_repeat Simple_repeat 1 39 0 249 284 105 11 chr11 135002237 135002332 -15781221 + L2 LINE L2 3163 3266 -6 578 204 147 32 chr11 135002335 135002492 -15781061 - FRAM SINE Alu -8 168 1 313 279 139 36 chr11 135002568 135002733 -15780820 + MIR SINE MIR 75 256 -6 325 253 13 0 chr11 135004353 135004432 -15779121 - MIR SINE MIR -74 188 109 353 346 11 0 chr11 135005243 135005358 -15778195 + MIR SINE MIR 34 150 -58 1900 200 44 65 chr11 135006081 135006646 -15776907 - L1ME2 LINE L1 -9 6155 5603 2058 205 114 9 chr11 135007648 135008643 -15774910 - L1MD1 LINE L1 -144 6596 5480 226 275 8 8 chr11 135008685 135008805 -15774748 + CT-rich Low_complexity Low_complexity 1 120 0 1292 226 45 37 chr11 135008805 135009270 -15774283 - L1MD1 LINE L1 -1200 5444 4976 423 0 0 0 chr11 135009291 135009338 -15774215 + (TG)n Simple_repeat Simple_repeat 2 48 0 741 140 0 0 chr11 135009349 135009463 -15774090 - AluSc SINE Alu -76 233 120 390 192 165 40 chr11 135009578 135009802 -15773751 - MER113 DNA MER1_type? -146 375 124 879 96 9 0 chr11 135010728 135010843 -15772710 - AluSg SINE Alu -194 116 1 5822 214 71 33 chr11 135010845 135014275 -15769278 - L1MD1 LINE L1 -1662 4982 1427 8431 221 44 33 chr11 135014288 135014649 -15768904 - L1MB3 LINE L1 -2 6417 6061 2259 109 10 0 chr11 135014649 135014952 -15768601 - AluSc SINE Alu -3 306 1 8431 221 44 33 chr11 135014952 135015454 -15768099 - L1MB3 LINE L1 -358 6061 5566 2114 16 0 12 chr11 135015454 135015704 -15767849 - L1PA4 LINE L1 -1 6154 5908 8431 221 44 33 chr11 135015704 135017671 -15765882 - L1MB3 LINE L1 -853 5566 3622 2204 115 0 7 chr11 135017671 135017966 -15765587 - AluSg SINE Alu -17 293 1 8431 221 44 33 chr11 135017966 135018000 -15765553 - L1MB3 LINE L1 -2797 3622 3590 809 145 0 8 chr11 135018000 135018131 -15765422 + FLAM_C SINE Alu 4 133 0 8431 221 44 33 chr11 135018131 135019189 -15764364 - L1MB3 LINE L1 -2829 3590 2439 1112 218 0 0 chr11 135019210 135019450 -15764103 - AluJb SINE Alu 0 323 84 275 221 65 45 chr11 135019489 135019616 -15763937 - L1MD1 LINE L1 -5182 1462 1328 2204 114 0 7 chr11 135019616 135019913 -15763640 + AluY SINE Alu 3 297 -14 275 221 65 45 chr11 135019913 135019984 -15763569 - L1MD1 LINE L1 -5316 1328 1260 * 1628 204 87 15 chr11 135019982 135020384 -15763169 - L1MD1 LINE L1 -6089 555 125 501 298 128 17 chr11 135020552 135020787 -15762766 - MIR SINE MIR 0 262 2 303 307 14 10 chr11 135020985 135021122 -15762431 - MIR SINE MIR -71 137 48 255 362 181 8 chr11 135022203 135022330 -15761223 - MIR3 SINE MIR -38 170 22 296 341 40 40 chr11 135022600 135022726 -15760827 - MIR3 SINE MIR -79 129 4 1834 220 27 2 chr11 135023117 135023567 -15759986 - L1ME1 LINE L1 -180 5986 5526 725 230 10 19 chr11 135023572 135023781 -15759772 + L1ME LINE L1 5312 5518 -648 282 303 0 0 chr11 135024488 135024587 -15758966 - L1MD1 LINE L1 -6390 152 54 1432 171 10 106 chr11 135024709 135025113 -15758440 + MLT1A1 LTR MaLR 1 365 0 7356 211 59 26 chr11 135025113 135026793 -15756760 + MLT1A1-int LTR MaLR 1 1735 0 346 123 0 35 chr11 135026793 135026850 -15756703 + MLT1A1 LTR MaLR 1 55 -373 736 197 7 44 chr11 135026850 135026958 -15756595 + FLAM_A SINE Alu 2 106 -205 2576 113 34 6 chr11 135026958 135027312 -15756241 + THE1B LTR MaLR 1 364 0 736 197 7 44 chr11 135027312 135027340 -15756213 + FLAM_A SINE Alu 106 133 -178 552 205 0 102 chr11 135027345 135027511 -15756042 + MLT1A1 LTR MaLR 47 195 -170 456 203 136 8 chr11 135027567 135027685 -15755868 + MLT1A1 LTR MaLR 185 317 -48 1289 290 93 47 chr11 135027857 135029053 -15754500 - L1M4 LINE L1 -1206 4940 3690 748 193 18 0 chr11 135029137 135029251 -15754302 - FLAM_A SINE Alu -17 116 1 188 280 111 86 chr11 135029412 135029762 -15753791 - L2 LINE L2 -879 2435 2077 685 186 25 8 chr11 135030202 135030320 -15753233 - FLAM_A SINE Alu -13 120 1 252 299 126 0 chr11 135030381 135030468 -15753085 - MIR3 SINE MIR -12 196 99 712 220 151 26 chr11 135030968 135031200 -15752353 - L2 LINE L2 -2 3311 3051 414 253 10 20 chr11 135031210 135031309 -15752244 - LTR16A LTR ERVL 0 450 353 4473 25 0 0 chr11 135031341 135031862 -15751691 - L1PA3 LINE L1 -1382 4764 4244 8344 19 0 0 chr11 135031864 135033255 -15750298 + L1PA3 LINE L1 4765 6155 0 2352 130 6 3 chr11 135033280 135033626 -15749927 + MER47A DNA MER2_type 20 366 0 858 269 95 16 chr11 135033629 135033934 -15749619 - LTR16A LTR ERVL -106 344 16 250 204 0 0 chr11 135033949 135033993 -15749560 - L2 LINE L2 -268 3045 3002 330 185 16 27 chr11 135034003 135034111 -15749442 - MIR SINE MIR -86 122 68 233 339 34 25 chr11 135034719 135034837 -15748716 - MIR SINE MIR -46 216 98 207 365 48 10 chr11 135035003 135035107 -15748446 + MIR3 SINE MIR 95 202 -6 233 305 114 0 chr11 135036752 135036857 -15746696 + MIR SINE MIR 32 148 -114 302 261 11 11 chr11 135036898 135036990 -15746563 + 7SK RNA RNA 8 99 -94 1166 173 14 41 chr11 135037346 135037566 -15745987 - MER20 DNA MER1_type 0 219 6 243 289 82 41 chr11 135037575 135037672 -15745881 + L2 LINE L2 3192 3292 -21 3848 256 61 34 chr11 135038438 135039719 -15743834 + L2 LINE L2 1750 3070 -243 188 323 104 0 chr11 135040152 135040248 -15743305 - L2 LINE L2 -8 3305 3200 225 0 0 0 chr11 135040668 135040693 -15742860 + (T)n Simple_repeat Simple_repeat 1 25 0 252 0 0 0 chr11 135040887 135040915 -15742638 + (T)n Simple_repeat Simple_repeat 1 28 0 392 260 131 10 chr11 135041737 135041883 -15741670 - MIR3 SINE MIR -1 207 47 309 238 0 0 chr11 135044231 135044311 -15739242 + (TA)n Simple_repeat Simple_repeat 2 81 0 203 152 0 0 chr11 135044312 135044345 -15739208 + (CA)n Simple_repeat Simple_repeat 1 33 0 222 328 131 22 chr11 135044911 135045078 -15738475 + L2 LINE L2 3026 3216 -56 216 0 0 0 chr11 135045078 135045102 -15738451 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 222 328 131 22 chr11 135045102 135045117 -15738436 + L2 LINE L2 3216 3228 -44 984 18 0 0 chr11 135045662 135045776 -15737777 + (TC)n Simple_repeat Simple_repeat 1 114 0 1936 193 14 14 chr11 135047063 135047410 -15736143 + MLT2C1 LTR ERVL 1 347 -50 299 136 0 45 chr11 135047432 135047498 -15736055 + MLT2C1 LTR ERVL 455 517 -3 325 342 84 0 chr11 135048043 135048198 -15735355 + MIR SINE MIR 24 191 -71 1979 163 76 25 chr11 135048256 135048788 -15734765 - MLT2A2 LTR ERVL 0 554 1 3281 280 79 40 chr11 135048857 135049019 -15734534 + L2 LINE L2 1533 1687 -1626 210 37 0 0 chr11 135049019 135049046 -15734507 + (CCAA)n Simple_repeat Simple_repeat 1 27 0 3281 280 79 40 chr11 135049046 135050589 -15732964 + L2 LINE L2 1687 3313 0 222 300 0 14 chr11 135050691 135050761 -15732792 - L3 LINE CR1 -342 1235 1167 338 239 145 17 chr11 135050997 135051114 -15732439 + MIR SINE MIR 120 251 -11 1244 263 103 7 chr11 135051605 135052061 -15731492 - LTR33 LTR ERVL -19 502 3 849 175 170 52 chr11 135052278 135052459 -15731094 + L1ME3 LINE L1 5906 6121 -41 1673 146 101 4 chr11 135052459 135052727 -15730826 - AluJb SINE Alu -16 296 3 849 175 170 52 chr11 135052727 135052774 -15730779 + L1ME3 LINE L1 6121 6161 -1 1961 105 0 0 chr11 135054316 135054574 -15728979 + AluSc SINE Alu 28 285 -24 1070 280 73 43 chr11 135054694 135055263 -15728290 - L2 LINE L2 -1 3312 2716 528 186 0 0 chr11 135055266 135055352 -15728201 - Tigger7 DNA MER2_type 0 2587 2502 1358 196 39 8 chr11 135055360 135055615 -15727938 - Tigger7 DNA MER2_type -2224 263 1 1821 255 106 34 chr11 135055619 135056301 -15727252 - L2 LINE L2 -604 2710 1980 1847 186 97 93 chr11 135056357 135057004 -15726549 + MLT1E1 LTR MaLR 1 650 -4 183 186 0 0 chr11 135057038 135057081 -15726472 + GA-rich Low_complexity Low_complexity 1 43 0 258 308 75 20 chr11 135057567 135057739 -15725814 + MIR SINE MIR 16 192 -69 882 303 111 17 chr11 135058676 135058804 -15724749 - L2 LINE L2 -1 3312 3197 180 0 0 0 chr11 135058804 135058824 -15724729 + (TA)n Simple_repeat Simple_repeat 2 21 0 882 303 111 17 chr11 135058824 135059055 -15724498 - L2 LINE L2 -116 3197 2919 240 265 0 0 chr11 135059065 135059133 -15724420 + (TTCA)n Simple_repeat Simple_repeat 1 68 0 1954 137 0 37 chr11 135059315 135059636 -15723917 - AluSx SINE Alu -3 309 1 305 290 213 11 chr11 135059712 135059895 -15723658 + MIR SINE MIR 20 239 -23 294 193 53 0 chr11 135060380 135060437 -15723116 + L2 LINE L2 3254 3313 0 711 88 0 0 chr11 135060963 135061076 -15722477 + (TTCC)n Simple_repeat Simple_repeat 2 114 0 1500 202 14 11 chr11 135061086 135061373 -15722180 - AluJb SINE Alu -24 288 1 22112 96 3 13 chr11 135061429 135065266 -15718287 - L1PA7 LINE L1 0 6469 2665 31 0 0 0 chr11 135065266 135065297 -15718256 + AT_rich Low_complexity Low_complexity 1 31 0 1109 144 4 79 chr11 135065405 135065634 -15717919 - AluY SINE Alu -99 212 1 10119 110 22 16 chr11 135065634 135065677 -15717876 - L1PA7 LINE L1 -3782 2679 2638 216 97 0 0 chr11 135065677 135065708 -15717845 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 10119 110 22 16 chr11 135065708 135067611 -15715942 - L1PA7 LINE L1 -3823 2638 713 882 238 222 37 chr11 135067764 135068223 -15715330 - MLT1H1 LTR MaLR -2 553 10 771 304 81 37 chr11 135068415 135068823 -15714730 + LTR16A LTR ERVL 8 433 -17 226 167 0 74 chr11 135068858 135068912 -15714641 - L1MC4 LINE L1 -1340 6702 6653 258 32 0 0 chr11 135069530 135069561 -15713992 + (TG)n Simple_repeat Simple_repeat 2 32 0 251 87 0 0 chr11 135069561 135069607 -15713946 + LTR66 LTR ERVL 394 439 -171 207 0 0 0 chr11 135069609 135069632 -15713921 + (CA)n Simple_repeat Simple_repeat 2 24 0 362 175 140 49 chr11 135070132 135070275 -15713278 + MLT1K LTR MaLR 429 584 -4 2070 120 7 0 chr11 135071260 135071543 -15712010 + AluSx SINE Alu 1 285 -27 405 0 0 0 chr11 135071550 135071595 -15711958 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 1002 182 10 89 chr11 135071657 135071860 -15711693 - MER5A DNA MER1_type -2 187 1 202 376 22 44 chr11 135072090 135072316 -15711237 - L2 LINE L2 -2879 435 215 207 0 0 0 chr11 135075663 135075686 -15707867 + (A)n Simple_repeat Simple_repeat 1 23 0 246 348 101 14 chr11 135076095 135076233 -15707320 + MIR3 SINE MIR 20 169 -39 424 193 55 37 chr11 135076576 135076685 -15706868 + MIR SINE MIR 10 120 -142 * 491 305 95 5 chr11 135076679 135076879 -15706674 - MIR SINE MIR -33 229 12 4723 60 4 0 chr11 135076919 135077469 -15706084 + MER41A LTR ERV1 3 554 0 274 191 0 0 chr11 135079325 135079372 -15704181 + MIR SINE MIR 201 247 -15 1483 209 127 8 chr11 135079630 135079984 -15703569 - MSTD LTR MaLR 0 396 1 264 200 0 0 chr11 135080643 135080713 -15702840 + GA-rich Low_complexity Low_complexity 4 73 0 280 191 22 22 chr11 135081709 135081798 -15701755 + GA-rich Low_complexity Low_complexity 4 92 0 326 304 66 36 chr11 135084065 135084241 -15699312 - MIR SINE MIR -66 142 16 489 347 108 41 chr11 135084339 135084800 -15698753 + L3 LINE CR1 52 543 -1034 180 286 0 0 chr11 135085438 135085473 -15698080 + L3b LINE CR1 1526 1560 -23 247 243 140 47 chr11 135085636 135085743 -15697810 + MIR SINE MIR 25 141 -67 327 163 25 125 chr11 135086587 135086667 -15696886 - L2 LINE L2 0 3272 3201 233 314 0 0 chr11 135088672 135088742 -15694811 + CT-rich Low_complexity Low_complexity 1 70 0 207 69 0 0 chr11 135088971 135089000 -15694553 + (TCCA)n Simple_repeat Simple_repeat 1 29 0 716 244 89 49 chr11 135089485 135089710 -15693843 - MIR SINE MIR -16 246 13 8082 187 18 2 chr11 135090729 135092081 -15691472 - L1PA15 LINE L1 -4 6161 4763 288 0 0 0 chr11 135092081 135092113 -15691440 + (TG)n Simple_repeat Simple_repeat 2 33 0 8082 187 18 2 chr11 135092113 135093156 -15690397 - L1PA15 LINE L1 -1402 4763 3738 2558 60 0 16 chr11 135093338 135093654 -15689899 - AluY SINE Alu 0 311 1 2486 85 0 0 chr11 135096523 135096828 -15686725 + AluSq SINE Alu 9 313 0 388 301 49 31 chr11 135097282 135097445 -15686108 + MIR3 SINE MIR 40 205 -3 2477 221 89 40 chr11 135097620 135098606 -15684947 - L1M4 LINE L1 -1552 4594 3560 477 278 116 25 chr11 135098655 135098896 -15684657 - L1M4 LINE L1 -1981 4165 3903 3167 196 76 22 chr11 135098899 135100326 -15683227 - L1MB7 LINE L1 -9 6175 4677 23 33 0 0 chr11 135101332 135101362 -15682191 + AT_rich Low_complexity Low_complexity 1 30 0 227 54 27 0 chr11 135101379 135101416 -15682137 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 14750 17 4 0 chr11 135101416 135103963 -15679590 - L1HS LINE L1 -12 6143 3586 * 25195 42 39 2 chr11 135103960 135107289 -15676264 + L1HS LINE L1 140 3591 -2555 518 320 45 58 chr11 135107484 135107615 -15675938 + L1MEd LINE L1 643 774 -5431 2095 126 3 32 chr11 135107615 135107924 -15675629 + AluSq SINE Alu 1 300 -13 518 320 45 58 chr11 135107924 135108192 -15675361 + L1MEd LINE L1 774 1037 -5168 580 277 45 53 chr11 135108230 135108605 -15674948 + L1MEd LINE L1 1370 1741 -4655 2250 98 14 0 chr11 135108643 135108940 -15674613 + AluSc SINE Alu 1 301 -8 1819 93 37 15 chr11 135110952 135111050 -15672503 + AluY SINE Alu 37 131 -180 2249 52 48 14 chr11 135111050 135111340 -15672213 + AluY SINE Alu 1 300 -11 1819 93 37 15 chr11 135111340 135111510 -15672043 + AluY SINE Alu 131 311 0 214 313 92 80 chr11 135111585 135111748 -15671805 - MIR3 SINE MIR -28 180 16 623 293 122 4 chr11 135111850 135112079 -15671474 + MIR SINE MIR 7 262 0 582 291 64 39 chr11 135112480 135112714 -15670839 - MIR SINE MIR -10 252 13 13664 201 28 14 chr11 135112951 135118627 -15664926 + L1MA4 LINE L1 1220 6980 -22 364 301 19 0 chr11 135119987 135120090 -15663463 + MIR3 SINE MIR 75 179 -29 180 176 0 0 chr11 135122377 135122411 -15661142 + T-rich Low_complexity Low_complexity 1 34 0 1994 125 14 4 chr11 135122898 135123239 -15660314 - AluSq SINE Alu 0 344 1 180 263 0 0 chr11 135123770 135123808 -15659745 - L2 LINE L2 -32 3240 3203 1053 266 77 26 chr11 135123975 135124363 -15659190 - MLT1J LTR MaLR -7 504 97 400 313 127 0 chr11 135124398 135124564 -15658989 + MIR SINE MIR 47 233 -29 218 366 52 13 chr11 135124810 135124963 -15658590 + L2 LINE L2 2495 2653 -661 188 412 32 42 chr11 135125104 135125320 -15658233 + L2 LINE L2 2870 3083 -189 613 320 58 9 chr11 135125737 135125962 -15657591 - MIR SINE MIR -4 258 23 2324 99 0 7 chr11 135126019 135126322 -15657231 + AluSx SINE Alu 1 301 -11 393 321 19 0 chr11 135126836 135126942 -15656611 + MIR SINE MIR 40 147 -61 301 299 41 20 chr11 135126951 135127098 -15656455 + L1ME3A LINE L1 5998 6147 -23 2800 221 86 83 chr11 135127478 135128006 -15655547 - L1MD2 LINE L1 -14 6739 6214 2278 100 0 13 chr11 135128006 135128315 -15655238 - AluSg1 SINE Alu -4 305 1 2800 221 86 83 chr11 135128315 135128845 -15654708 - L1MD2 LINE L1 -539 6214 5687 266 87 22 0 chr11 135128845 135128891 -15654662 + (TA)n Simple_repeat Simple_repeat 1 47 0 2800 221 86 83 chr11 135128891 135129681 -15653872 - L1MD2 LINE L1 -1066 5687 4874 606 254 18 35 chr11 135129681 135129850 -15653703 - MER76 LTR ERV -227 461 296 525 256 0 13 chr11 135129871 135130027 -15653526 - L1MD2 LINE L1 -2309 4231 4078 2426 243 72 32 chr11 135130043 135131215 -15652338 - L1MD2 LINE L1 -2655 3885 2666 1160 200 14 0 chr11 135131224 135131439 -15652114 - AluJo SINE Alu -8 304 87 2691 213 65 70 chr11 135131466 135132610 -15650943 - L1MD2 LINE L1 -3890 2650 1513 408 323 163 12 chr11 135132729 135133298 -15650255 + L1ME3A LINE L1 3622 4276 -1870 22 56 0 0 chr11 135133515 135133551 -15650002 + AT_rich Low_complexity Low_complexity 1 36 0 306 294 20 78 chr11 135133811 135134107 -15649446 + L1ME3A LINE L1 4866 5144 -1002 1143 232 78 15 chr11 135134111 135134665 -15648888 + L1ME3A LINE L1 5561 6334 0 324 260 58 114 chr11 135134672 135134998 -15648555 + L1ME3A LINE L1 5124 5431 -743 42614 36 2 2 chr11 135134998 135138192 -15645361 + L1PA4 LINE L1 2 3192 -2963 2535 53 0 0 chr11 135138192 135138492 -15645061 + AluY SINE Alu 1 300 -11 42614 36 2 2 chr11 135138492 135141452 -15642101 + L1PA4 LINE L1 3192 6152 -3 368 324 45 6 chr11 135141472 135141648 -15641905 + L1ME3A LINE L1 5428 5610 -632 1054 295 41 36 chr11 135141648 135142184 -15641369 - L2 LINE L2 -48 3265 2726 307 336 145 17 chr11 135142222 135142511 -15641042 + L1ME3A LINE L1 5625 5950 -220 25 31 0 0 chr11 135142619 135142651 -15640902 + AT_rich Low_complexity Low_complexity 1 32 0 490 232 122 15 chr11 135142989 135143186 -15640367 - L1ME1 LINE L1 -23 6142 5932 1059 316 54 36 chr11 135143213 135144152 -15639401 - L1MEc LINE L1 -5406 990 35 923 219 53 66 chr11 135144283 135144687 -15638866 - L1MC5 LINE L1 -175 7786 7387 1607 197 88 28 chr11 135144687 135145118 -15638435 + MSTB2 LTR MaLR 1 457 0 923 219 53 66 chr11 135145118 135145166 -15638387 - L1MC5 LINE L1 -574 7387 7340 2111 113 34 0 chr11 135145190 135145481 -15638072 - AluSx SINE Alu -9 303 3 1504 158 104 3 chr11 135146213 135146567 -15636986 - Charlie5 DNA MER1_type 0 2623 2234 629 192 0 0 chr11 135146564 135146689 -15636864 - Charlie5 DNA MER1_type -2485 127 3 * 799 231 31 70 chr11 135147428 135147482 -15636071 - MIR SINE MIR -6 256 201 1998 128 0 45 chr11 135147482 135147794 -15635759 - AluSx SINE Alu -2 310 13 799 231 31 70 chr11 135147794 135147968 -15635585 - MIR SINE MIR -61 201 37 243 317 65 32 chr11 135148346 135148469 -15635084 + L2 LINE L2 3134 3260 -12 429 319 71 7 chr11 135148506 135148647 -15634906 + MIR3 SINE MIR 26 175 -33 2226 74 0 58 chr11 135148700 135149034 -15634519 - AluY SINE Alu 0 311 1 212 338 14 37 chr11 135149556 135149695 -15633858 - MIR SINE MIR -65 143 31 575 347 81 61 chr11 135151251 135151323 -15632230 - L2 LINE L2 0 3272 3203 2401 103 0 3 chr11 135151323 135151635 -15631918 + AluSx SINE Alu 1 311 -1 575 347 81 61 chr11 135151635 135151971 -15631582 - L2 LINE L2 -69 3203 2856 580 232 238 5 chr11 135151979 135152164 -15631389 - MIR SINE MIR -17 245 18 2527 58 0 10 chr11 135152240 135152552 -15631001 + AluY SINE Alu 1 309 -2 330 330 0 0 chr11 135152908 135153002 -15630551 - L2 LINE L2 -1 3312 3219 724 219 0 8 chr11 135153201 135153329 -15630224 + FLAM_C SINE Alu 1 127 -6 356 314 40 34 chr11 135154484 135154659 -15628894 - MIR3 SINE MIR -24 184 9 1816 169 19 3 chr11 135154766 135155073 -15628480 - AluJo SINE Alu 0 312 1 1408 206 37 40 chr11 135155730 135156084 -15627469 - MLT1B LTR MaLR -37 353 1 442 178 103 19 chr11 135156718 135156825 -15626728 - MIR SINE MIR -77 185 70 279 172 31 0 chr11 135157764 135157828 -15625725 - MLT2B2 LTR ERVL 0 520 455 525 84 46 23 chr11 135157836 135157967 -15625586 + (TAGA)n Simple_repeat Simple_repeat 4 137 0 1579 212 20 6 chr11 135157968 135158381 -15625172 - MLT2B2 LTR ERVL -49 466 1 1367 183 74 88 chr11 135158569 135159083 -15624470 - MER84 LTR ERV1 0 507 1 191 263 0 0 chr11 135159171 135159209 -15624344 + MER5B DNA MER1_type 38 75 -103 302 341 12 0 chr11 135159499 135159584 -15623969 - MER5A DNA MER1_type -2 187 102 273 341 115 19 chr11 135160809 135161017 -15622536 - MIR SINE MIR 0 262 35 271 232 0 0 chr11 135161147 135161203 -15622350 + Tigger2 DNA MER2_type 11 66 -2652 2293 153 14 31 chr11 135161205 135161651 -15621902 + Tigger2 DNA MER2_type 2281 2718 0 959 294 257 21 chr11 135161737 135162021 -15621532 - L3 LINE CR1 -13 1564 1348 180 0 0 0 chr11 135162021 135162041 -15621512 + (CA)n Simple_repeat Simple_repeat 1 20 0 959 294 257 21 chr11 135162041 135162475 -15621078 - L3 LINE CR1 -229 1348 676 365 257 157 0 chr11 135162481 135162621 -15620932 + L1ME4a LINE L1 5856 6017 -104 29 28 0 0 chr11 135162638 135162674 -15620879 + AT_rich Low_complexity Low_complexity 1 36 0 1487 85 90 0 chr11 135164070 135164281 -15619272 - MER30 DNA MER1_type 0 230 1 325 229 0 0 chr11 135164610 135164671 -15618882 + L2 LINE L2 3190 3250 -22 200 205 0 0 chr11 135165021 135165060 -15618493 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 257 339 73 9 chr11 135165226 135165335 -15618218 - L2 LINE L2 -287 2985 2870 306 282 26 0 chr11 135165430 135165508 -15618045 + L2 LINE L2 3234 3313 0 235 227 0 0 chr11 135165508 135165552 -15618001 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 218 290 140 68 chr11 135165571 135165892 -15617661 - L2 LINE L2 -901 2413 2070 372 265 56 112 chr11 135166751 135166947 -15616606 + MIR SINE MIR 13 197 -65 292 343 120 28 chr11 135168457 135168673 -15614880 + MIR SINE MIR 3 238 -24 2340 103 0 3 chr11 135168673 135168983 -15614570 - AluSx SINE Alu -3 309 1 1763 233 101 20 chr11 135169281 135169826 -15613727 - MLT1G1 LTR MaLR 0 595 7 261 258 109 10 chr11 135170235 135170385 -15613168 + MIR SINE MIR 36 251 -11 764 269 72 5 chr11 135171540 135171763 -15611790 - MIR SINE MIR -10 252 15 204 267 120 11 chr11 135171988 135172127 -15611426 + MIR SINE MIR 55 211 -51 388 341 104 9 chr11 135172409 135172629 -15610924 + L3b LINE CR1 1290 1530 -53 195 291 47 102 chr11 135173829 135173956 -15609597 + L3 LINE CR1 1447 1566 -11 1955 117 3 37 chr11 135174337 135174635 -15608918 - AluSx SINE Alu -22 290 3 1912 155 3 3 chr11 135175482 135175779 -15607774 + AluJb SINE Alu 14 310 -2 186 240 0 0 chr11 135175807 135175857 -15607696 + CT-rich Low_complexity Low_complexity 2 51 0 2347 266 154 45 chr11 135175886 135177026 -15606527 - HAL1 LINE L1 -361 2146 760 2481 20 41 3 chr11 135177026 135177321 -15606232 - AluY SINE Alu -5 306 1 2347 266 154 45 chr11 135177321 135177867 -15605686 - HAL1 LINE L1 -1747 760 275 324 0 0 0 chr11 135178006 135178042 -15605511 + (TG)n Simple_repeat Simple_repeat 2 37 0 277 227 27 40 chr11 135178481 135178556 -15604997 - L2 LINE L2 0 3313 3240 537 248 137 95 chr11 135178556 135179125 -15604428 + MLT1G1 LTR MaLR 1 593 -2 622 279 29 41 chr11 135180529 135180613 -15602940 + MIR SINE MIR 22 106 -156 1661 193 41 93 chr11 135180613 135181106 -15602447 - MLT1C LTR MaLR 0 467 1 622 279 29 41 chr11 135181106 135181265 -15602288 + MIR SINE MIR 106 262 0 871 65 0 0 chr11 135181570 135181678 -15601875 - L1P4 LINE L1 -504 5664 5557 1967 88 39 14 chr11 135181678 135181960 -15601593 + L1PA11 LINE L1 5883 6174 0 1609 225 48 69 chr11 135182693 135183214 -15600339 - MLT2B1 LTR ERVL 0 520 11 702 320 40 5 chr11 135183243 135183465 -15600088 + MIR SINE MIR 17 246 -16 2159 109 7 3 chr11 135183632 135183942 -15599611 + AluSq SINE Alu 1 311 0 2015 133 3 3 chr11 135184472 135184765 -15598788 - AluSg SINE Alu -15 295 3 2220 116 10 0 chr11 135184876 135185179 -15598374 - AluSx SINE Alu -6 306 1 3999 13 3 0 chr11 135185499 135186091 -15597462 + L1P1 LINE L1 5111 5704 -451 238 298 74 8 chr11 135186100 135186221 -15597332 + L2 LINE L2 2723 2851 -463 2616 141 3 0 chr11 135186248 135186631 -15596922 + MLT1B LTR MaLR 7 390 0 2179 124 0 3 chr11 135186764 135187070 -15596483 + AluSx SINE Alu 1 305 -7 471 239 134 40 chr11 135187355 135187556 -15595997 + MLT1J LTR MaLR 288 507 -4 286 409 63 5 chr11 135187764 135187975 -15595578 - L2 LINE L2 -322 2991 2769 55 16 0 0 chr11 135190620 135190682 -15592871 + AT_rich Low_complexity Low_complexity 1 62 0 601 311 130 54 chr11 135191122 135191621 -15591932 + L1ME4a LINE L1 2894 3354 -2792 3823 129 6 62 chr11 135191621 135191886 -15591667 + L1PA15 LINE L1 5560 5838 -327 1809 56 0 0 chr11 135191886 135192100 -15591453 + AluY SINE Alu 95 308 -3 3823 129 6 62 chr11 135192100 135192476 -15591077 + L1PA15 LINE L1 5838 6165 0 601 311 130 54 chr11 135192476 135193008 -15590545 + L1ME4a LINE L1 3354 4003 -2143 2217 95 0 0 chr11 135193382 135193699 -15589854 + AluSp SINE Alu 1 317 0 22 0 0 0 chr11 135193745 135193767 -15589786 + AT_rich Low_complexity Low_complexity 1 22 0 755 305 71 9 chr11 135193857 135194277 -15589276 + L1ME4a LINE L1 5408 5870 -251 273 252 70 17 chr11 135194291 135194406 -15589147 + L1ME4a LINE L1 5960 6080 -41 33 56 0 0 chr11 135195054 135195108 -15588445 + AT_rich Low_complexity Low_complexity 1 54 0 210 143 0 0 chr11 135195901 135195936 -15587617 + (TTCC)n Simple_repeat Simple_repeat 2 36 0 206 232 29 14 chr11 135195953 135196022 -15587531 + (TA)n Simple_repeat Simple_repeat 1 70 0 227 243 0 14 chr11 135196025 135196099 -15587454 + L1MCa LINE L1 2006 2078 -4348 1231 262 65 32 chr11 135196500 135196932 -15586621 - MLT1J1 LTR MaLR 0 446 1 2455 95 0 0 chr11 135199537 135199843 -15583710 - AluSg SINE Alu -4 306 1 1271 65 5 65 chr11 135199876 135200062 -15583491 - AluY SINE Alu -1 310 136 243 372 3 0 chr11 135201447 135201568 -15581985 + MIR SINE MIR 64 184 -61 209 308 96 19 chr11 135201810 135201914 -15581639 + MIR SINE MIR 70 181 -81 400 291 217 13 chr11 135202182 135202412 -15581141 + L3 LINE CR1 1275 1551 -26 1763 181 48 24 chr11 135202955 135203291 -15580262 - MER7A DNA MER2_type 0 346 5 458 275 14 7 chr11 135203565 135203703 -15579850 + L2 LINE L2 3172 3310 -3 186 269 45 30 chr11 135204729 135204796 -15578757 - L2 LINE L2 0 3272 3205 23 0 0 0 chr11 135205200 135205223 -15578330 + AT_rich Low_complexity Low_complexity 1 23 0 777 292 19 19 chr11 135205335 135205595 -15577958 + MIR SINE MIR 1 260 -2 221 267 45 109 chr11 135205774 135206021 -15577532 + MIR SINE MIR 32 262 0 258 235 37 37 chr11 135206202 135206283 -15577270 - MIR SINE MIR -64 198 118 2140 165 81 15 chr11 135206568 135207188 -15576365 - MER39 LTR ERV1 0 707 1 262 333 0 0 chr11 135209353 135209428 -15574125 + G-rich Low_complexity Low_complexity 3 77 0 200 342 0 0 chr11 135209933 135210009 -15573544 + GA-rich Low_complexity Low_complexity 4 79 0 204 0 83 0 chr11 135211097 135211133 -15572420 + (TA)n Simple_repeat Simple_repeat 2 40 0 306 313 46 38 chr11 135211197 135211328 -15572225 + MIR3 SINE MIR 38 169 -39 238 250 50 60 chr11 135211393 135211493 -15572060 + MIR SINE MIR 164 262 0 961 279 85 25 chr11 135211521 135211923 -15571630 - MARNA DNA Mariner -72 514 89 278 279 99 72 chr11 135212211 135212322 -15571231 - L2 LINE L2 -86 3186 3073 198 0 0 0 chr11 135212531 135212553 -15571000 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2239 123 0 59 chr11 135213223 135213581 -15569972 - MER1B DNA MER1_type 0 337 1 46 33 0 0 chr11 135214243 135214303 -15569250 + AT_rich Low_complexity Low_complexity 1 60 0 437 263 90 28 chr11 135214337 135214521 -15569032 - MIR SINE MIR -52 156 12 439 195 0 0 chr11 135214694 135214771 -15568782 + MER116 DNA Mariner 4 80 0 2040 193 35 20 chr11 135215118 135215365 -15568188 + MLT1C LTR MaLR 1 260 -207 2348 151 28 60 chr11 135215365 135215801 -15567752 - MSTA LTR MaLR -4 424 3 2040 193 35 20 chr11 135215801 135216010 -15567543 + MLT1C LTR MaLR 260 464 -3 479 292 88 6 chr11 135216552 135216723 -15566830 - MIR SINE MIR -8 254 70 271 258 32 0 chr11 135216976 135217069 -15566484 + MIR SINE MIR 90 185 -77 231 203 0 0 chr11 135217472 135217536 -15566017 + L1MC4 LINE L1 6635 6698 -1344 312 233 53 0 chr11 135217607 135217740 -15565813 + (TA)n Simple_repeat Simple_repeat 1 140 0 660 256 44 116 chr11 135217858 135218202 -15565351 + L2 LINE L2 2983 3301 -12 771 287 136 35 chr11 135219078 135219646 -15563907 - L1MC4a LINE L1 -1781 6027 5403 1804 166 10 3 chr11 135219934 135220223 -15563330 - AluSx SINE Alu -21 291 1 483 281 119 72 chr11 135220544 135220728 -15562825 - L1ME3A LINE L1 -265 5905 5731 2343 98 0 19 chr11 135220728 135221045 -15562508 + AluSp SINE Alu 1 311 -2 483 281 119 72 chr11 135221045 135221393 -15562160 - L1ME3A LINE L1 -439 5731 5352 1537 108 0 0 chr11 135221415 135221619 -15561934 - AluSq SINE Alu -109 204 1 2486 175 61 13 chr11 135221807 135222279 -15561274 + MLT1F1 LTR MaLR 28 522 -45 2319 123 25 31 chr11 135222279 135222637 -15560916 - MLT1A1 LTR MaLR 0 365 10 260 159 0 0 chr11 135222706 135222750 -15560803 + MLT1F1 LTR MaLR 499 542 0 328 189 54 122 chr11 135222849 135223071 -15560482 - L1M4 LINE L1 -2069 4077 3871 1152 242 0 9 chr11 135223263 135223325 -15560228 - MER58A DNA MER1_type -2199 221 160 2115 117 3 3 chr11 135223325 135223623 -15559930 - AluSq SINE Alu -15 298 1 1152 242 0 9 chr11 135223623 135223783 -15559770 - MER58A DNA MER1_type -2260 160 1 426 242 170 33 chr11 135223797 135223950 -15559603 - MER5A DNA MER1_type -7 182 9 422 301 156 14 chr11 135224050 135224684 -15558869 - L1M4 LINE L1 -2663 3483 2760 443 249 79 117 chr11 135225890 135226155 -15557398 - MIR SINE MIR 0 262 8 541 306 135 36 chr11 135226507 135226602 -15556951 - MLT1J2 LTR MaLR 0 450 366 2564 146 79 9 chr11 135226602 135227033 -15556520 - LOR1b LTR ERV1 0 461 1 541 306 135 36 chr11 135227033 135227329 -15556224 - MLT1J2 LTR MaLR -84 366 20 1322 244 70 64 chr11 135227490 135227692 -15555861 + MLT1F1 LTR MaLR 1 200 -367 2336 112 0 6 chr11 135227692 135228004 -15555549 - AluSg SINE Alu 0 310 1 1322 244 70 64 chr11 135228004 135228300 -15555253 + MLT1F1 LTR MaLR 200 502 -65 234 191 21 0 chr11 135228457 135228504 -15555049 + MLT1F1 LTR MaLR 518 565 -2 1108 292 38 36 chr11 135230775 135231224 -15552329 + LTR16B LTR ERVL 3 452 -12 454 214 157 82 chr11 135231529 135231809 -15551744 - MER46C DNA MER2_type -36 302 2 573 285 42 85 chr11 135231825 135232085 -15551468 - MIR SINE MIR -12 250 2 211 250 60 48 chr11 135232201 135232285 -15551268 + MIR SINE MIR 104 188 -74 330 26 0 0 chr11 135232642 135232681 -15550872 + (TC)n Simple_repeat Simple_repeat 1 39 0 303 49 0 0 chr11 135232680 135232721 -15550832 + (CA)n Simple_repeat Simple_repeat 1 41 0 * 368 307 119 11 chr11 135233383 135233559 -15549994 + MIR SINE MIR 67 261 -1 431 282 34 67 chr11 135234277 135234486 -15549067 + MIR SINE MIR 55 256 -6 232 324 0 0 chr11 135234499 135234567 -15548986 + (TAG)n Simple_repeat Simple_repeat 1 68 0 1077 212 159 34 chr11 135234886 135235301 -15548252 + MLT1C LTR MaLR 1 467 0 257 246 16 0 chr11 135235770 135235860 -15547693 + (TGAA)n Simple_repeat Simple_repeat 1 91 0 2343 63 0 11 chr11 135236115 135236424 -15547129 + AluY SINE Alu 1 306 0 287 345 125 12 chr11 135236499 135236922 -15546631 - L2 LINE L2 -931 2383 1913 240 256 85 0 chr11 135238162 135238244 -15545309 + L1MC4 LINE L1 6615 6703 -1339 2458 66 0 13 chr11 135240013 135240318 -15543235 + AluY SINE Alu 1 301 -10 1250 115 150 0 chr11 135240356 135240556 -15542997 + MER30 DNA MER1_type 1 230 0 735 305 41 34 chr11 135240623 135240915 -15542638 - MLT1I LTR MaLR -18 391 98 283 305 137 8 chr11 135241064 135241195 -15542358 + L2 LINE L2 3166 3313 0 300 365 115 4 chr11 135242589 135242849 -15540704 + L2 LINE L2 2100 2388 -926 2353 111 0 0 chr11 135243794 135244100 -15539453 + AluSx SINE Alu 1 306 -6 623 150 0 1 chr11 135244134 135244241 -15539312 + L1MD3 LINE L1 7900 7995 0 207 327 118 0 chr11 135245839 135245949 -15537604 + MIR SINE MIR 82 204 -58 2070 130 0 7 chr11 135247983 135248282 -15535271 - AluSx SINE Alu -15 297 1 1555 248 60 18 chr11 135250219 135250720 -15532833 + L1M4 LINE L1 4483 5004 -1142 198 0 0 0 chr11 135250769 135250791 -15532762 + (A)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr11 135250846 135250867 -15532686 + AT_rich Low_complexity Low_complexity 1 21 0 370 232 37 55 chr11 135251074 135251238 -15532315 + L1ME LINE L1 3075 3235 -2911 480 302 34 10 chr11 135251384 135251615 -15531938 + L1ME LINE L1 3702 3938 -2208 * 815 300 69 46 chr11 135251613 135252003 -15531550 + L1MCc LINE L1 895 1293 -5130 505 220 9 0 chr11 135252005 135252114 -15531439 + L1ME LINE L1 4838 4947 -1199 * 932 221 76 0 chr11 135252108 135252370 -15531183 + L1ME LINE L1 5297 5578 -588 1811 299 11 14 chr11 135252380 135252946 -15530607 + L1M4 LINE L1 8 571 -5971 551 217 0 35 chr11 135252954 135253069 -15530484 + L1M4 LINE L1 709 819 -5723 1357 234 201 9 chr11 135253078 135253502 -15530051 + MLT1D LTR MaLR 1 505 0 2185 210 62 10 chr11 135253503 135254085 -15529468 + L1M4 LINE L1 828 1439 -5103 6084 157 37 31 chr11 135254089 135254322 -15529231 + L1PBa LINE L1 1773 2003 -4859 2174 128 3 0 chr11 135254322 135254627 -15528926 + AluSc SINE Alu 1 306 -3 6084 157 37 31 chr11 135254627 135256227 -15527326 + L1PBa LINE L1 2003 3620 -3242 2223 135 0 0 chr11 135256227 135256539 -15527014 + AluSx SINE Alu 1 312 0 6084 157 37 31 chr11 135256539 135256567 -15526986 + L1PBa LINE L1 3620 3646 -3216 262 333 0 0 chr11 135257168 135257243 -15526310 + C-rich Low_complexity Low_complexity 3 77 0 2140 163 72 12 chr11 135259408 135260028 -15523525 + MER39 LTR ERV1 1 707 0 258 235 37 37 chr11 135260313 135260394 -15523159 + MIR SINE MIR 118 198 -64 221 267 45 109 chr11 135260575 135260822 -15522731 - MIR SINE MIR 0 262 32 777 292 19 19 chr11 135261001 135261261 -15522292 - MIR SINE MIR -2 260 1 23 0 0 0 chr11 135261377 135261400 -15522153 + AT_rich Low_complexity Low_complexity 1 23 0 186 269 45 30 chr11 135261804 135261871 -15521682 + L2 LINE L2 3205 3272 0 458 275 14 7 chr11 135262897 135263035 -15520518 - L2 LINE L2 -3 3310 3172 1745 184 48 24 chr11 135263309 135263645 -15519908 + MER7A DNA MER2_type 5 346 0 400 291 217 13 chr11 135264188 135264418 -15519135 - L3 LINE CR1 -26 1551 1275 209 308 96 19 chr11 135264686 135264790 -15518763 - MIR SINE MIR -81 181 70 243 372 3 0 chr11 135265032 135265153 -15518400 - MIR SINE MIR -61 147 64 1271 65 5 65 chr11 135266538 135266724 -15516829 + AluY SINE Alu 136 310 -1 2358 98 0 0 chr11 135266757 135267052 -15516501 + AluSg SINE Alu 1 295 -15 205 325 74 18 chr11 135267244 135267407 -15516146 - L2 LINE L2 -1418 1896 1725 2158 109 7 3 chr11 135267582 135267892 -15515661 - AluSq SINE Alu 0 311 1 702 320 40 5 chr11 135268059 135268281 -15515272 - MIR SINE MIR -16 246 17 1609 225 48 69 chr11 135268310 135268831 -15514722 + MLT2B1 LTR ERVL 11 520 0 1967 88 39 14 chr11 135269564 135269849 -15513704 - L1PA11 LINE L1 0 6174 5883 838 67 0 0 chr11 135269849 135269954 -15513599 + L1P4 LINE L1 5560 5664 -504 622 279 29 41 chr11 135270259 135270418 -15513135 - MIR SINE MIR 0 262 106 1786 186 36 95 chr11 135270418 135270914 -15512639 + MLT1C LTR MaLR 1 467 0 622 279 29 41 chr11 135270914 135270998 -15512555 - MIR SINE MIR -156 106 22 275 261 23 34 chr11 135272386 135272398 -15511155 + L2 LINE L2 3227 3238 -75 800 230 146 104 chr11 135272398 135272967 -15510586 - MLT1G1 LTR MaLR -2 593 1 275 261 23 34 chr11 135272967 135273042 -15510511 + L2 LINE L2 3238 3313 0 288 0 0 0 chr11 135273481 135273513 -15510040 + (CA)n Simple_repeat Simple_repeat 2 33 0 672 278 146 77 chr11 135273652 135274195 -15509358 + HAL1 LINE L1 275 854 -1653 2525 20 40 3 chr11 135274198 135274494 -15509059 + AluY SINE Alu 1 307 -4 1156 88 0 16 chr11 135274637 135274819 -15508734 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 782 108 0 9 chr11 135274824 135274935 -15508618 - L1PB1 LINE L1 -5 6146 6037 236 384 39 19 chr11 135274976 135275182 -15508371 + L2 LINE L2 2307 2516 -798 1144 254 97 67 chr11 135275410 135275905 -15507648 + MLT1J LTR MaLR 1 510 -1 196 265 88 15 chr11 135276259 135276327 -15507226 + MER5A DNA MER1_type 117 189 0 584 256 84 48 chr11 135276327 135276577 -15506976 - L3 LINE CR1 -104 1473 1215 913 167 6 0 chr11 135276613 135276781 -15506772 - L1MA4 LINE L1 -42 6258 6090 1618 104 35 23 chr11 135276857 135277117 -15506436 - L1MA5 LINE L1 0 6300 6038 210 313 15 0 chr11 135277716 135277783 -15505770 + L2 LINE L2 3244 3311 -2 180 0 0 0 chr11 135278923 135278943 -15504610 + (T)n Simple_repeat Simple_repeat 1 20 0 1995 278 115 31 chr11 135278988 135280683 -15502870 - L1MC/D LINE L1 -807 5339 3927 3076 219 96 9 chr11 135280694 135281496 -15502057 - L1ME1 LINE L1 -5 6161 5290 408 158 97 18 chr11 135281530 135281541 -15502012 - L1MA10 LINE L1 -42 6292 6282 573 266 54 71 chr11 135281541 135281838 -15501715 - L1ME1 LINE L1 -44 6358 6067 1089 228 48 0 chr11 135281923 135282234 -15501319 - L1ME1 LINE L1 -1571 4811 4486 485 273 119 23 chr11 135282330 135282506 -15501047 + MIR SINE MIR 22 214 -48 29 0 0 0 chr11 135282871 135282900 -15500653 + AT_rich Low_complexity Low_complexity 1 29 0 1682 256 56 67 chr11 135282905 135283300 -15500253 - L1ME1 LINE L1 -4006 2557 2159 1766 154 51 51 chr11 135283300 135283690 -15499863 + MLT1B LTR MaLR 1 390 0 1682 256 56 67 chr11 135283690 135284537 -15499016 - L1ME1 LINE L1 -4404 2159 1154 5516 159 14 9 chr11 135284564 135286352 -15497201 - L1PB1 LINE L1 0 6151 4364 1676 210 5 9 chr11 135286354 135286802 -15496751 - L1PB1 LINE L1 -2805 3341 2896 189 0 0 0 chr11 135286802 135286823 -15496730 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr11 135287448 135287469 -15496084 + AT_rich Low_complexity Low_complexity 1 21 0 200 374 44 11 chr11 135287532 135287623 -15495930 + MIR SINE MIR 49 142 -66 354 196 28 9 chr11 135287625 135287732 -15495821 + CT-rich Low_complexity Low_complexity 3 111 0 1491 196 83 21 chr11 135287735 135288201 -15495352 + MER39 LTR ERV1 1 707 0 222 156 47 16 chr11 135288201 135288265 -15495288 + CT-rich Low_complexity Low_complexity 4 69 0 21 71 0 0 chr11 135288368 135288410 -15495143 + AT_rich Low_complexity Low_complexity 1 42 0 702 290 55 31 chr11 135288530 135288785 -15494768 + MIR SINE MIR 2 262 0 203 330 28 135 chr11 135289148 135289430 -15494123 + L2 LINE L2 2956 3207 -65 390 289 16 16 chr11 135290897 135291025 -15492528 - MIR SINE MIR -99 163 36 305 169 0 15 chr11 135291164 135291229 -15492324 + (TATG)n Simple_repeat Simple_repeat 2 65 0 610 298 152 30 chr11 135292524 135292920 -15490633 + LTR16A LTR ERVL 1 437 -13 2207 101 9 17 chr11 135294100 135294447 -15489106 - L1PA14 LINE L1 0 6161 5818 265 184 0 58 chr11 135294456 135294543 -15489010 + CT-rich Low_complexity Low_complexity 6 87 0 236 388 0 0 chr11 135294877 135294962 -15488591 + MIR SINE MIR 58 142 -66 227 359 52 85 chr11 135294975 135295223 -15488330 + L2 LINE L2 2999 3238 -34 1571 217 71 23 chr11 135295941 135296379 -15487174 + LTR40b LTR ERVL 3 461 -1 454 274 91 41 chr11 135296499 135296696 -15486857 - MIR SINE MIR -16 246 40 2737 129 19 19 chr11 135297871 135298296 -15485257 + MSTC LTR MaLR 4 428 0 471 317 5 32 chr11 135299134 135299316 -15484237 - MIR SINE MIR -66 142 15 1343 238 28 59 chr11 135299711 135300170 -15483383 - MER39 LTR ERV1 -3 704 260 327 160 350 0 chr11 135300145 135300245 -15483308 - MER39 LTR ERV1 -572 135 1 * 937 289 28 4 chr11 135300339 135300592 -15482961 - MIR SINE MIR -1 261 3 1320 198 74 19 chr11 135300696 135301019 -15482534 + MER58B DNA MER1_type 1 341 0 3585 126 40 10 chr11 135301752 135302094 -15481459 - L1MB3 LINE L1 0 6183 5814 2111 141 0 0 chr11 135302094 135302398 -15481155 - AluSx SINE Alu -8 304 1 3585 126 40 10 chr11 135302398 135302657 -15480896 - L1MB3 LINE L1 -369 5814 5564 182 36 0 36 chr11 135302877 135302905 -15480648 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 216 0 0 0 chr11 135303944 135303968 -15479585 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2025 124 0 0 chr11 135303968 135304243 -15479310 - AluSx SINE Alu -37 275 1 397 242 11 0 chr11 135304341 135304436 -15479117 + MIR SINE MIR 119 214 -48 735 299 19 19 chr11 135304558 135304772 -15478781 + MIR SINE MIR 45 258 -4 1982 177 103 4 chr11 135304813 135305288 -15478265 + Charlie1b DNA MER1_type 2 523 0 1297 193 48 16 chr11 135306246 135306540 -15477013 + MSTB LTR MaLR 113 426 0 11323 57 2 0 chr11 135306543 135308792 -15474761 + L1PA5 LINE L1 3900 6153 -1 191 228 0 70 chr11 135310158 135310215 -15473338 - MIR SINE MIR -5 257 205 316 271 56 19 chr11 135310260 135310367 -15473186 - MER94 DNA DNA 0 134 24 328 354 99 11 chr11 135311003 135311184 -15472369 + MIR SINE MIR 3 199 -63 231 305 0 0 chr11 135311651 135311710 -15471843 + L3 LINE CR1 1052 1110 -467 5487 106 14 17 chr11 135312398 135313348 -15470205 + L1PB1 LINE L1 5200 6146 -5 278 246 16 0 chr11 135313603 135313664 -15469889 - L2 LINE L2 -2 3270 3209 288 305 0 0 chr11 135313945 135314027 -15469526 + L3 LINE CR1 1148 1229 -348 2500 220 55 32 chr11 135315296 135316407 -15467146 + L1MCa LINE L1 973 2299 -4308 426 86 0 0 chr11 135316630 135316688 -15466865 + U6 snRNA snRNA 47 104 -3 268 302 45 89 chr11 135317614 135317793 -15465760 - MIR SINE MIR 0 262 92 2147 128 0 0 chr11 135317930 135318228 -15465325 + AluSg SINE Alu 1 298 -12 204 388 48 0 chr11 135318380 135318483 -15465070 + MIR3 SINE MIR 9 116 -92 344 311 40 0 chr11 135318808 135318956 -15464597 + MER117 DNA MER1_type 5 158 -39 294 306 151 60 chr11 135318973 135319205 -15464348 + MIR SINE MIR 4 256 -6 1054 107 10 10 chr11 135320582 135320892 -15462661 + (GAAA)n Simple_repeat Simple_repeat 1 310 0 214 282 59 0 chr11 135320961 135321046 -15462507 + L2 LINE L2 2296 2385 -929 260 338 23 30 chr11 135322070 135322203 -15461350 - MIR SINE MIR -72 190 59 4430 123 21 48 chr11 135322355 135323205 -15460348 + L1PA13 LINE L1 5336 6162 -1 195 139 0 0 chr11 135323573 135323609 -15459944 + (ATG)n Simple_repeat Simple_repeat 1 36 0 417 273 28 57 chr11 135323818 135323869 -15459684 - MIR3 SINE MIR 0 208 157 515 264 92 11 chr11 135323869 135324043 -15459510 + MER5A DNA MER1_type 2 189 0 417 273 28 57 chr11 135324043 135324167 -15459386 - MIR3 SINE MIR -51 157 38 507 321 66 9 chr11 135324464 135324782 -15458771 + LTR16B LTR ERVL 129 464 0 483 272 78 35 chr11 135324990 135325311 -15458242 + MLT1I LTR MaLR 93 409 0 2596 52 7 0 chr11 135325577 135325882 -15457671 + AluY SINE Alu 1 307 -4 3047 91 23 9 chr11 135326743 135327181 -15456372 + MLT2A1 LTR ERVL 1 444 0 35327 71 11 14 chr11 135327181 135332032 -15451521 + HERVL-A1 LTR ERVL 1 4835 -819 485 249 0 6 chr11 135432040 135432213 -15351340 + (TA)n Simple_repeat Simple_repeat 1 172 0 396 287 0 0 chr11 135432265 135432439 -15351114 + (TA)n Simple_repeat Simple_repeat 1 174 0 357 296 0 0 chr11 135432459 135432631 -15350922 + (TA)n Simple_repeat Simple_repeat 1 172 0 229 274 0 42 chr11 135432688 135432783 -15350770 - L1MC4 LINE L1 -1339 6703 6613 232 139 0 114 chr11 135432692 135432771 -15350782 + L1MCa LINE L1 1995 2064 -4362 216 250 0 0 chr11 135432783 135432847 -15350706 + (TA)n Simple_repeat Simple_repeat 1 64 0 198 0 0 0 chr11 135432876 135432898 -15350655 + (TA)n Simple_repeat Simple_repeat 2 23 0 257 50 0 25 chr11 135433004 135433044 -15350509 + (TA)n Simple_repeat Simple_repeat 2 40 0 2588 86 43 8 chr11 135433044 135433417 -15350136 - MLT2A1 LTR ERVL -58 386 1 38958 69 9 11 chr11 135433417 135439091 -15344462 - HERVL-A1-A1 LTR ERVL 0 5654 1 3047 91 23 9 chr11 135439091 135439529 -15344024 - MLT2A1 LTR ERVL 0 444 1 523 107 25 44 chr11 135440521 135440680 -15342873 + (TA)n Simple_repeat Simple_repeat 2 157 0 223 225 14 14 chr11 135440891 135440962 -15342591 + (TA)n Simple_repeat Simple_repeat 1 71 0 204 388 48 0 chr11 135441475 135441578 -15341975 - MIR3 SINE MIR -92 116 9 2147 128 0 0 chr11 135441730 135442028 -15341525 - AluSg SINE Alu -12 298 1 268 302 45 89 chr11 135442165 135442344 -15341209 + MIR SINE MIR 92 262 0 426 86 0 0 chr11 135443270 135443328 -15340225 - U6 snRNA snRNA -3 104 47 2500 220 55 32 chr11 135443551 135444662 -15338891 - L1MCa LINE L1 -4308 2299 973 240 279 0 47 chr11 135445932 135446018 -15337535 - L3 LINE CR1 -348 1229 1148 278 246 16 0 chr11 135446299 135446360 -15337193 + L2 LINE L2 3209 3270 -2 5476 107 14 17 chr11 135446615 135447565 -15335988 - L1PB1 LINE L1 -5 6146 5200 231 305 0 0 chr11 135448253 135448312 -15335241 - L3 LINE CR1 -467 1110 1052 328 354 99 11 chr11 135448779 135448960 -15334593 - MIR SINE MIR -63 199 3 314 271 56 19 chr11 135449596 135449703 -15333850 + MER94 DNA DNA 24 134 0 191 228 0 70 chr11 135449748 135449805 -15333748 + MIR SINE MIR 205 257 -5 11399 56 6 5 chr11 135451176 135453426 -15330127 - L1PA5 LINE L1 -1 6153 3900 1778 181 79 26 chr11 135453429 135453781 -15329772 - MSTB LTR MaLR 0 426 51 2574 56 7 0 chr11 135453781 135454086 -15329467 - AluY SINE Alu -4 307 1 1778 181 79 26 chr11 135454086 135454114 -15329439 - MSTB LTR MaLR -375 51 26 508 270 78 35 chr11 135454352 135454673 -15328880 - MLT1I LTR MaLR 0 409 93 507 321 66 9 chr11 135454881 135455199 -15328354 - LTR16B LTR ERVL 0 464 129 417 273 28 57 chr11 135455497 135455621 -15327932 + MIR3 SINE MIR 38 157 -51 515 264 92 11 chr11 135455621 135455795 -15327758 - MER5A DNA MER1_type 0 189 2 417 273 28 57 chr11 135455795 135455846 -15327707 + MIR3 SINE MIR 157 208 0 189 299 75 41 chr11 135456086 135456233 -15327320 - MIR SINE MIR -1 261 110 4406 125 21 49 chr11 135456458 135457309 -15326244 - L1PA13 LINE L1 -1 6162 5336 260 289 30 25 chr11 135457457 135457594 -15325959 + MIR SINE MIR 56 190 -64 214 282 59 0 chr11 135458618 135458703 -15324850 - L2 LINE L2 -929 2385 2296 1120 101 6 11 chr11 135458766 135458945 -15324608 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1176 83 6 11 chr11 135458958 135459139 -15324414 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 648 70 0 0 chr11 135459140 135459226 -15324327 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 723 108 0 9 chr11 135459232 135459343 -15324210 - L1PB1 LINE L1 -5 6146 6037 204 393 49 28 chr11 135459384 135459669 -15323884 + L2 LINE L2 2307 2597 -717 957 266 87 56 chr11 135459818 135460265 -15323288 + MLT1J LTR MaLR 1 461 -50 200 265 88 15 chr11 135460667 135460735 -15322818 + MER5A DNA MER1_type 117 189 0 610 238 97 52 chr11 135460735 135460983 -15322570 - L3 LINE CR1 -104 1473 1215 875 174 0 0 chr11 135461015 135461187 -15322366 - L1MA4 LINE L1 -39 6261 6090 1482 104 35 23 chr11 135461263 135461523 -15322030 - L1MA5 LINE L1 0 6300 6038 218 313 15 0 chr11 135462122 135462189 -15321364 + L2 LINE L2 3244 3311 -2 1784 205 107 7 chr11 135463393 135463851 -15319702 - L1MC/D LINE L1 -2047 5761 5258 399 313 65 40 chr11 135463872 135464147 -15319406 - L1MC/D LINE L1 -913 5233 4952 331 278 86 37 chr11 135464306 135464738 -15318815 - L1MC/D LINE L1 -1397 4749 4297 351 324 81 31 chr11 135464829 135465088 -15318465 - L1MC/D LINE L1 -1948 4198 3927 2718 223 93 6 chr11 135465099 135465901 -15317652 - L1ME1 LINE L1 -5 6161 5290 408 158 97 18 chr11 135465935 135465949 -15317604 - L1MA10 LINE L1 -42 6292 6279 473 265 54 71 chr11 135465949 135466243 -15317310 - L1ME1 LINE L1 -47 6355 6067 1089 228 48 0 chr11 135466328 135466639 -15316914 - L1ME1 LINE L1 -1571 4811 4486 485 273 119 23 chr11 135466735 135466911 -15316642 + MIR SINE MIR 22 214 -48 29 0 0 0 chr11 135467276 135467305 -15316248 + AT_rich Low_complexity Low_complexity 1 29 0 1682 256 56 67 chr11 135467310 135467705 -15315848 - L1ME1 LINE L1 -4006 2557 2159 1766 154 51 51 chr11 135467705 135468095 -15315458 + MLT1B LTR MaLR 1 390 0 1682 256 56 67 chr11 135468095 135468942 -15314611 - L1ME1 LINE L1 -4404 2159 1154 5516 159 14 9 chr11 135468969 135470757 -15312796 - L1PB1 LINE L1 0 6151 4364 1676 210 5 9 chr11 135470759 135471207 -15312346 - L1PB1 LINE L1 -2805 3341 2896 189 0 0 0 chr11 135471207 135471228 -15312325 + (T)n Simple_repeat Simple_repeat 1 21 0 226 318 175 43 chr11 135472703 135472914 -15310639 - MIR SINE MIR -6 256 18 240 170 39 20 chr11 135473033 135473186 -15310367 + (TA)n Simple_repeat Simple_repeat 1 156 0 198 125 16 31 chr11 135473224 135473288 -15310265 + (TA)n Simple_repeat Simple_repeat 1 63 0 311 108 0 51 chr11 135473324 135473406 -15310147 + MLT2A2 LTR ERVL 402 453 0 1984 176 101 4 chr11 135474970 135475446 -15308107 - Charlie1b DNA MER1_type 0 523 2 735 299 19 19 chr11 135475487 135475701 -15307852 - MIR SINE MIR -4 258 45 397 242 11 0 chr11 135475824 135475919 -15307634 - MIR SINE MIR -48 214 119 2025 124 0 0 chr11 135476017 135476292 -15307261 + AluSx SINE Alu 1 275 -37 216 0 0 0 chr11 135476292 135476316 -15307237 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 182 36 0 36 chr11 135477358 135477386 -15306167 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 3585 126 40 10 chr11 135477606 135477865 -15305688 + L1MB3 LINE L1 5564 5814 -369 2125 138 0 0 chr11 135477865 135478169 -15305384 + AluSx SINE Alu 1 304 -8 3585 126 40 10 chr11 135478169 135478511 -15305042 + L1MB3 LINE L1 5814 6183 0 1310 198 74 19 chr11 135479244 135479567 -15303986 - MER58B DNA MER1_type 0 341 1 937 289 28 4 chr11 135479671 135479924 -15303629 + MIR SINE MIR 3 261 -1 327 160 350 0 chr11 135480018 135480118 -15303435 + MER39 LTR ERV1 1 135 -572 * 1343 238 28 59 chr11 135480093 135480552 -15303001 + MER39 LTR ERV1 260 704 -3 457 324 5 32 chr11 135480947 135481129 -15302424 + MIR SINE MIR 15 191 -66 2727 125 21 19 chr11 135481967 135482391 -15301162 - MSTC LTR MaLR 0 428 4 454 274 91 41 chr11 135483568 135483765 -15299788 + MIR SINE MIR 40 246 -16 1593 217 71 21 chr11 135483885 135484322 -15299231 - LTR40b LTR ERVL -1 461 3 224 355 52 85 chr11 135485040 135485288 -15298265 - L2 LINE L2 -34 3238 2999 236 388 0 0 chr11 135485301 135485386 -15298167 - MIR SINE MIR -66 142 58 221 333 0 15 chr11 135485685 135485751 -15297802 + polypurine Low_complexity Low_complexity 6 70 0 * 312 178 28 47 chr11 135485718 135485825 -15297728 + GA-rich Low_complexity Low_complexity 1 105 0 2364 100 9 18 chr11 135485834 135486175 -15297378 + L1PA14 LINE L1 5818 6155 -6 702 293 108 26 chr11 135487361 135487757 -15295796 - LTR16A LTR ERVL -13 437 1 320 174 0 14 chr11 135489049 135489118 -15294435 + (CATA)n Simple_repeat Simple_repeat 2 69 0 374 289 16 16 chr11 135489257 135489385 -15294168 + MIR SINE MIR 36 163 -99 187 330 28 135 chr11 135490837 135491119 -15292434 - L2 LINE L2 -65 3207 2956 697 286 55 31 chr11 135491486 135491741 -15291812 - MIR SINE MIR 0 262 2 22 70 0 0 chr11 135491862 135491905 -15291648 + AT_rich Low_complexity Low_complexity 1 43 0 226 190 60 10 chr11 135491973 135492073 -15291480 + GA-rich Low_complexity Low_complexity 1 105 0 1631 203 63 11 chr11 135492073 135492423 -15291130 - MER39 LTR ERV1 0 707 340 454 168 101 50 chr11 135492410 135492529 -15291024 - MER39 LTR ERV1 -572 135 11 * 354 196 28 9 chr11 135492542 135492649 -15290904 + GA-rich Low_complexity Low_complexity 3 111 0 193 374 44 11 chr11 135492651 135492742 -15290811 - MIR SINE MIR -66 142 49 21 0 0 0 chr11 135492805 135492826 -15290727 + AT_rich Low_complexity Low_complexity 1 21 0 2041 117 0 46 chr11 135493729 135494053 -15289500 - AluSc SINE Alu 0 309 1 198 0 0 0 chr11 135494541 135494563 -15288990 + (A)n Simple_repeat Simple_repeat 1 22 0 354 273 15 8 chr11 135495392 135495524 -15288029 + (TA)n Simple_repeat Simple_repeat 2 134 0 225 349 54 91 chr11 135496104 135496531 -15287022 - L2 LINE L2 -26 3246 2836 577 340 86 26 chr11 135497617 135498038 -15285515 + L3 LINE CR1 1074 1519 -58 1405 190 50 92 chr11 135498138 135498517 -15285036 + MLT1A1 LTR MaLR 1 363 -2 1522 90 0 10 chr11 135498823 135499023 -15284530 + AluSg/x SINE Alu 103 300 -12 21 0 0 0 chr11 135499064 135499085 -15284468 + AT_rich Low_complexity Low_complexity 1 21 0 640 158 47 0 chr11 135499097 135499224 -15284329 + L1MB3 LINE L1 6050 6182 -1 2329 118 0 3 chr11 135500180 135500494 -15283059 - AluSq SINE Alu 0 313 1 3033 140 4 2 chr11 135501660 135502125 -15281428 - L1MA8 LINE L1 -291 6000 5535 2402 42 3 3 chr11 135502158 135502515 -15281038 - AluY SINE Alu 0 357 1 278 274 0 12 chr11 135502541 135502625 -15280928 - MIR SINE MIR -149 113 31 2004 130 3 20 chr11 135503229 135503560 -15279993 - AluSx SINE Alu 0 312 1 2243 103 3 3 chr11 135503588 135503898 -15279655 + AluSg SINE Alu 1 310 0 2707 141 2 5 chr11 135503901 135504320 -15279233 - L1MB3 LINE L1 -7 6176 5759 6935 135 14 9 chr11 135505172 135505467 -15278086 - L1MA2 LINE L1 0 6304 6012 396 0 0 0 chr11 135505467 135505511 -15278042 + (CA)n Simple_repeat Simple_repeat 2 45 0 6935 135 14 9 chr11 135505511 135507030 -15276523 - L1MA2 LINE L1 -292 6012 4481 292 245 91 70 chr11 135507289 135507355 -15276198 + MIR SINE MIR 113 176 -86 7874 35 0 2 chr11 135507355 135509008 -15274545 + L1PA4 LINE L1 4489 6155 0 292 245 91 70 chr11 135509008 135509084 -15274469 + MIR SINE MIR 176 258 -4 587 250 9 0 chr11 135509119 135509231 -15274322 - MER81 DNA DNA 0 114 2 31 0 0 0 chr11 135509299 135509330 -15274223 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr11 135510020 135510043 -15273510 + AT_rich Low_complexity Low_complexity 1 23 0 372 59 0 0 chr11 135510302 135510353 -15273200 + (TG)n Simple_repeat Simple_repeat 2 52 0 187 207 0 0 chr11 135511477 135511506 -15272047 + L2 LINE L2 3205 3233 -39 848 317 89 67 chr11 135512404 135513347 -15270206 + L1MEc LINE L1 366 1329 -5392 277 239 173 42 chr11 135513383 135513406 -15270147 + L1MEc LINE L1 1232 1251 -5289 839 191 0 0 chr11 135513406 135513537 -15270016 + FLAM_C SINE Alu 2 132 -1 277 239 173 42 chr11 135513537 135513802 -15269751 + L1MEc LINE L1 1251 1558 -4982 180 0 0 0 chr11 135514572 135514592 -15268961 + (TCC)n Simple_repeat Simple_repeat 2 21 0 225 315 181 8 chr11 135514889 135515016 -15268537 + MIR SINE MIR 1 149 -113 212 268 113 0 chr11 135515384 135515455 -15268098 + MIR3 SINE MIR 3 81 -127 200 73 73 0 chr11 135515782 135515823 -15267730 + A-rich Low_complexity Low_complexity 2 45 0 556 329 152 20 chr11 135516127 135516522 -15267031 + L3 LINE CR1 1130 1576 -1 339 305 0 51 chr11 135516814 135516932 -15266621 - L3 LINE CR1 -11 1566 1455 284 355 38 53 chr11 135521005 135521323 -15262230 + L2 LINE L2 2430 2742 -572 2159 92 21 3 chr11 135522024 135522306 -15261247 + AluSx SINE Alu 1 287 -25 213 39 0 0 chr11 135523225 135523251 -15260302 + (CAG)n Simple_repeat Simple_repeat 2 27 0 2655 95 19 13 chr11 135524298 135524676 -15258877 - MLT2A1 LTR ERVL -64 380 1 1694 216 3 0 chr11 135524689 135525022 -15258531 + L1M4 LINE L1 3917 4250 -1896 * 4645 198 9 1 chr11 135525021 135526326 -15257227 + L1PA6 LINE L1 4792 6105 -49 7591 203 39 9 chr11 135526429 135528131 -15255422 + L1MEc LINE L1 2555 4306 -2234 2880 109 18 41 chr11 135528131 135528572 -15254981 - MLT2A1 LTR ERVL 0 444 14 632 283 112 27 chr11 135528770 135529215 -15254338 - HAL1 LINE L1 -5 2502 2020 2203 101 0 3 chr11 135529264 135529551 -15254002 - AluSc SINE Alu -23 286 1 2287 95 7 3 chr11 135529551 135529846 -15253707 - AluSg SINE Alu -14 296 1 213 284 0 11 chr11 135529850 135529938 -15253615 + T-rich Low_complexity Low_complexity 4 90 0 884 238 54 27 chr11 135532158 135532452 -15251101 + L1M4 LINE L1 4899 5200 -946 2227 73 7 3 chr11 135532816 135533103 -15250450 - AluSp SINE Alu -25 288 1 204 293 9 38 chr11 135533800 135533893 -15249660 + GA-rich Low_complexity Low_complexity 5 96 -11 2578 50 0 0 chr11 135533893 135534194 -15249359 - AluY SINE Alu -10 301 1 204 293 9 38 chr11 135534194 135534206 -15249347 + GA-rich Low_complexity Low_complexity 96 107 0 367 276 41 59 chr11 135534241 135534411 -15249142 - L1MC4 LINE L1 -65 7977 7811 364 306 0 48 chr11 135534469 135534616 -15248937 - L1ME2 LINE L1 -1 6163 6024 1931 126 0 0 chr11 135534730 135534991 -15248562 + AluSq SINE Alu 1 261 -52 12653 88 2 1 chr11 135535094 135536703 -15246850 + HERVL LTR ERVL 506 2117 -3537 4441 85 5 20 chr11 135536742 135537391 -15246162 + HERVL LTR ERVL 2107 2745 -2909 583 211 12 50 chr11 135537492 135537653 -15245900 + LTR9 LTR ERV1 458 612 0 3426 165 23 9 chr11 135537669 135538461 -15245092 + HUERS-P3 LTR ERV1 17 901 -8018 215 170 0 19 chr11 135538464 135538517 -15245036 + (TG)n Simple_repeat Simple_repeat 1 52 0 237 245 88 29 chr11 135538544 135538646 -15244907 - L1MC4 LINE L1 -142 7900 7793 2058 122 61 19 chr11 135539099 135539459 -15244094 + THE1C LTR MaLR 1 375 0 1002 99 13 0 chr11 135539459 135539611 -15243942 + THE1C-int LTR MaLR 1 154 -1426 1642 90 13 0 chr11 135539613 135539846 -15243707 + THE1C-int LTR MaLR 100 335 -1245 3826 110 54 23 chr11 135539995 135540658 -15242895 + L1MA3 LINE L1 5622 6305 0 1353 230 27 29 chr11 135541805 135542249 -15241304 + L1M4 LINE L1 4905 5347 -799 367 323 76 32 chr11 135542258 135542752 -15240801 + L2 LINE L2 2666 3181 -132 690 125 16 16 chr11 135542861 135542989 -15240564 - LTR22 LTR ERVK -381 128 1 898 203 0 0 chr11 135543038 135543196 -15240357 + FRAM SINE Alu 11 168 -8 24 0 0 0 chr11 135543196 135543220 -15240333 + AT_rich Low_complexity Low_complexity 1 24 0 2103 172 127 37 chr11 135543801 135544416 -15239137 + LTR8A LTR ERV1 1 670 -57 6119 250 36 17 chr11 135545683 135548051 -15235502 + L1MEc LINE L1 2104 4479 -1736 1120 170 5 10 chr11 135548299 135548505 -15235048 + MLT1D LTR MaLR 299 503 -2 254 389 53 48 chr11 135548717 135548925 -15234628 - L2 LINE L2 -177 3095 2887 22 35 0 0 chr11 135549009 135549038 -15234515 + AT_rich Low_complexity Low_complexity 1 29 0 223 257 14 29 chr11 135550126 135550196 -15233357 + MIR3 SINE MIR 129 197 -11 369 237 101 36 chr11 135550254 135550393 -15233160 - MIR SINE MIR -114 148 1 2738 82 8 16 chr11 135550734 135551111 -15232442 + THE1C LTR MaLR 2 375 0 1356 202 72 54 chr11 135551256 135551702 -15231851 - MLT1C LTR MaLR 0 467 14 182 114 0 29 chr11 135555501 135555536 -15228017 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 207 0 0 0 chr11 135555601 135555624 -15227929 + (CA)n Simple_repeat Simple_repeat 1 23 0 278 215 161 31 chr11 135556464 135556594 -15226959 + MIR SINE MIR 98 244 -18 378 0 0 0 chr11 135556658 135556700 -15226853 + (TG)n Simple_repeat Simple_repeat 1 42 0 252 0 0 0 chr11 135556699 135556727 -15226826 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 402 307 101 11 chr11 135557758 135557937 -15225616 + L2 LINE L2 3117 3311 -2 382 311 99 36 chr11 135557938 135558160 -15225393 + MIR SINE MIR 27 262 0 887 276 45 4 chr11 135558708 135558951 -15224602 + MIR SINE MIR 9 261 -1 241 198 16 83 chr11 135559021 135559111 -15224442 + MIR SINE MIR 20 147 -61 183 278 125 62 chr11 135559369 135559545 -15224008 + L2 LINE L2 2677 2863 -451 237 200 36 0 chr11 135559946 135560001 -15223552 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 365 273 36 133 chr11 135560110 135560388 -15223165 - L2 LINE L2 -31 3241 2991 196 143 29 0 chr11 135561018 135561053 -15222500 + MIR3 SINE MIR 146 181 -27 350 293 200 0 chr11 135563429 135563569 -15219984 + L2 LINE L2 3104 3271 -1 2082 122 0 0 chr11 135564366 135564687 -15218866 + AluSx SINE Alu 6 326 0 277 310 55 35 chr11 135565165 135565310 -15218243 + L3b LINE CR1 1104 1251 -332 728 237 21 11 chr11 135565320 135565506 -15218047 + MER5A DNA MER1_type 1 188 -1 693 36 0 0 chr11 135565697 135565781 -15217772 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 2202 111 3 3 chr11 135565945 135566243 -15217310 + AluSg SINE Alu 1 298 -12 204 40 0 0 chr11 135567021 135567046 -15216507 + (A)n Simple_repeat Simple_repeat 1 25 0 330 324 61 14 chr11 135567080 135567228 -15216325 + L3 LINE CR1 343 497 -1080 860 323 56 75 chr11 135567319 135567832 -15215721 + L3 LINE CR1 864 1385 -192 1939 107 33 0 chr11 135567832 135567952 -15215601 + AluSx SINE Alu 4 119 -193 366 23 0 0 chr11 135567952 135567995 -15215558 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1939 107 33 0 chr11 135567995 135568146 -15215407 + AluSx SINE Alu 119 284 -28 1419 42 0 0 chr11 135568153 135568369 -15215184 + (GAAA)n Simple_repeat Simple_repeat 1 216 0 860 323 56 75 chr11 135568369 135568540 -15215013 + L3 LINE CR1 1391 1544 -33 216 0 0 0 chr11 135569790 135569814 -15213739 + (CA)n Simple_repeat Simple_repeat 1 24 0 2121 126 0 7 chr11 135569890 135570184 -15213369 + AluSg SINE Alu 1 292 -18 305 48 32 32 chr11 135570184 135570246 -15213307 + (TA)n Simple_repeat Simple_repeat 2 63 0 795 261 74 32 chr11 135571099 135571383 -15212170 + L3b LINE CR1 1192 1487 -96 393 117 0 0 chr11 135571801 135571861 -15211692 + (TA)n Simple_repeat Simple_repeat 2 61 0 223 339 40 16 chr11 135572028 135572152 -15211401 + MIR3 SINE MIR 1 127 -81 731 211 75 0 chr11 135572274 135572435 -15211118 + MER5B DNA MER1_type 1 173 -5 409 267 11 11 chr11 135572495 135572585 -15210968 + L2 LINE L2 3168 3257 -15 216 167 62 42 chr11 135572543 135572591 -15210962 + MIR SINE MIR 214 262 0 * 368 295 116 78 chr11 135572925 135572985 -15210568 - L2 LINE L2 -4 3268 3212 764 243 15 10 chr11 135572985 135573187 -15210366 + MER105 DNA DNA 2 204 0 368 295 116 78 chr11 135573187 135573239 -15210314 - L2 LINE L2 -60 3212 3163 1030 214 5 0 chr11 135573239 135573445 -15210108 + MER3 DNA MER1_type 3 209 0 368 295 116 78 chr11 135573445 135574119 -15209434 - L2 LINE L2 -109 3163 2439 229 357 23 35 chr11 135575179 135575350 -15208203 + MIR3 SINE MIR 7 175 -33 566 182 230 7 chr11 135575696 135575844 -15207709 + MIR SINE MIR 82 262 0 189 204 204 0 chr11 135577373 135577417 -15206136 + L2 LINE L2 3180 3232 -40 550 179 19 13 chr11 135577419 135577575 -15205978 + GA-rich Low_complexity Low_complexity 1 157 0 259 286 0 0 chr11 135578311 135578381 -15205172 - MIR3 SINE MIR -11 197 128 25 0 0 0 chr11 135578814 135578839 -15204714 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr11 135581074 135581095 -15202458 + AT_rich Low_complexity Low_complexity 1 21 0 182 190 0 35 chr11 135586295 135586353 -15197200 + CT-rich Low_complexity Low_complexity 2 57 0 22 0 0 0 chr11 135586801 135586823 -15196730 + AT_rich Low_complexity Low_complexity 1 22 0 247 246 0 16 chr11 135588495 135588556 -15194997 + GA-rich Low_complexity Low_complexity 5 64 0 259 274 51 34 chr11 135589372 135589489 -15194064 + MIR SINE MIR 144 262 0 222 222 0 0 chr11 135590137 135590191 -15193362 + A-rich Low_complexity Low_complexity 1 54 0 258 136 0 0 chr11 135591447 135591491 -15192062 + (CA)n Simple_repeat Simple_repeat 1 44 0 380 306 189 5 chr11 135591861 135592067 -15191486 - MIR SINE MIR -11 251 8 201 121 0 0 chr11 135592238 135592271 -15191282 + (GA)n Simple_repeat Simple_repeat 2 34 0 183 351 0 18 chr11 135592319 135592376 -15191177 - L2 LINE L2 -8 3264 3209 314 302 87 32 chr11 135592421 135592547 -15191006 + L2 LINE L2 3121 3253 -19 201 121 0 0 chr11 135594094 135594127 -15189426 + (GA)n Simple_repeat Simple_repeat 2 34 0 295 192 27 0 chr11 135594721 135594794 -15188759 - MADE1 DNA Mariner 0 80 6 1700 195 0 0 chr11 135595769 135596061 -15187492 - AluJo SINE Alu -20 292 1 949 172 32 0 chr11 135596573 135596730 -15186823 - FRAM SINE Alu -15 161 1 1996 104 0 4 chr11 135597022 135597292 -15186261 + AluSx SINE Alu 38 306 -6 251 286 0 0 chr11 135597555 135597611 -15185942 + L2 LINE L2 3200 3255 -17 204 219 0 0 chr11 135597577 135597618 -15185935 + MIR SINE MIR 218 258 -4 * 672 271 73 6 chr11 135597946 135598123 -15185430 + MIR3 SINE MIR 20 208 0 270 333 61 0 chr11 135598433 135598532 -15185021 - MIR SINE MIR -109 153 49 201 241 63 13 chr11 135598979 135599058 -15184495 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 283 127 32 16 chr11 135599074 135599137 -15184416 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 481 360 50 0 chr11 135602735 135602957 -15180596 + MIR SINE MIR 9 241 -21 2237 121 0 3 chr11 135603338 135603695 -15179858 - AluSq SINE Alu 0 356 1 2237 264 51 37 chr11 135603879 135604256 -15179297 + L1ME1 LINE L1 3382 3752 -2394 2452 88 0 0 chr11 135604256 135604563 -15178990 + AluSg SINE Alu 1 307 -3 2237 264 51 37 chr11 135604563 135605227 -15178326 + L1ME1 LINE L1 3752 4437 -1709 1412 227 62 35 chr11 135605230 135605683 -15177870 + MLT1C LTR MaLR 1 465 -2 3215 226 46 17 chr11 135605685 135607359 -15176194 + L1ME1 LINE L1 4436 6153 -13 840 228 82 5 chr11 135607491 135607697 -15175856 + MER58A DNA MER1_type 2 223 -1 446 294 78 22 chr11 135608171 135608351 -15175202 + MIR SINE MIR 1 190 -72 232 250 74 83 chr11 135609623 135609731 -15173822 + L2 LINE L2 2948 3054 -218 2094 128 3 10 chr11 135609851 135610156 -15173397 - AluSg SINE Alu -7 303 1 422 143 24 12 chr11 135610216 135610300 -15173253 - MER53 DNA DNA 0 189 105 352 184 35 11 chr11 135610223 135610310 -15173243 + MER53 DNA DNA 17 105 -84 * 61 45 0 0 chr11 135611174 135611263 -15172290 + AT_rich Low_complexity Low_complexity 1 89 0 320 335 38 34 chr11 135612881 135613090 -15170463 - MIR SINE MIR -48 214 5 216 97 0 0 chr11 135613255 135613286 -15170267 + (CA)n Simple_repeat Simple_repeat 2 32 0 376 286 54 41 chr11 135613653 135613800 -15169753 - MIR SINE MIR -74 188 40 460 310 59 66 chr11 135613842 135614145 -15169408 + L2 LINE L2 2882 3182 -131 2473 51 0 19 chr11 135614177 135614489 -15169064 - AluY SINE Alu -5 306 1 1052 304 68 93 chr11 135615225 135616204 -15167349 + L3 LINE CR1 609 1563 -14 328 328 67 22 chr11 135616287 135616421 -15167132 + L2 LINE L2 3133 3272 0 196 302 0 16 chr11 135616439 135616502 -15167051 + L2 LINE L2 2992 3053 -219 1962 152 8 8 chr11 135616648 135617004 -15166549 + L1MA4 LINE L1 5945 6300 0 2086 195 79 13 chr11 135617140 135617695 -15165858 + L1MC4a LINE L1 7216 7807 -1 2065 201 11 5 chr11 135617790 135618336 -15165217 + MER82 DNA MER2_type 7 653 0 476 380 123 22 chr11 135619071 135619723 -15163830 + L2 LINE L2 2553 3272 0 21 0 0 0 chr11 135620521 135620542 -15163011 + AT_rich Low_complexity Low_complexity 1 21 0 528 169 57 0 chr11 135621257 135621381 -15162172 + L1MA6 LINE L1 6170 6300 0 1659 191 0 23 chr11 135621520 135621824 -15161729 + AluJo SINE Alu 5 301 -11 2457 126 55 24 chr11 135621935 135622356 -15161197 + Tigger2a DNA MER2_type 1 434 0 1075 80 7 7 chr11 135623019 135623169 -15160384 + L1PB2 LINE L1 5995 6144 -7 1985 122 31 3 chr11 135623293 135623580 -15159973 + AluSq SINE Alu 1 295 -18 2198 114 0 0 chr11 135624805 135625104 -15158449 + AluSq SINE Alu 1 299 -14 289 368 26 34 chr11 135625589 135625706 -15157847 - L2 LINE L2 -23 3249 3134 1207 279 59 45 chr11 135625792 135626284 -15157269 - LTR33 LTR ERVL -6 515 17 2433 82 0 19 chr11 135626650 135626969 -15156584 - AluSq SINE Alu 0 313 1 2501 68 0 3 chr11 135629247 135629556 -15153997 + AluY SINE Alu 3 310 -1 1996 107 0 7 chr11 135630706 135630977 -15152576 - AluSx SINE Alu -2 310 42 180 0 0 0 chr11 135631985 135632005 -15151548 + (GA)n Simple_repeat Simple_repeat 1 20 0 247 256 122 11 chr11 135632618 135632708 -15150845 + MLT1I LTR MaLR 77 176 -233 253 227 191 18 chr11 135632862 135632972 -15150581 + MLT1H LTR MaLR 405 533 -16 1841 122 0 0 chr11 135634000 135634246 -15149307 - AluSg SINE Alu -16 294 49 21 0 0 0 chr11 135634997 135635018 -15148535 + AT_rich Low_complexity Low_complexity 1 21 0 265 299 15 0 chr11 135636250 135636317 -15147236 + L2 LINE L2 3203 3270 -2 387 0 0 0 chr11 135638034 135638077 -15145476 + (CA)n Simple_repeat Simple_repeat 2 44 0 2352 105 0 9 chr11 135640159 135640474 -15143079 + AluSx SINE Alu 1 312 0 22 0 0 0 chr11 135640832 135640854 -15142699 + AT_rich Low_complexity Low_complexity 1 22 0 180 189 233 0 chr11 135642430 135642520 -15141033 - MER5C DNA MER1_type -32 292 182 315 85 0 0 chr11 135643309 135643356 -15140197 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 378 265 20 0 chr11 135643356 135643458 -15140095 + GA-rich Low_complexity Low_complexity 1 104 0 782 146 23 6 chr11 135643475 135643646 -15139907 + GA-rich Low_complexity Low_complexity 4 177 0 351 44 0 0 chr11 135645320 135645365 -15138188 + (TC)n Simple_repeat Simple_repeat 1 45 0 * 459 52 0 0 chr11 135645364 135645422 -15138131 + (CA)n Simple_repeat Simple_repeat 1 58 0 949 172 32 0 chr11 135646120 135646277 -15137276 - FRAM SINE Alu -15 161 1 1885 98 0 4 chr11 135646569 135646891 -15136662 + AluSx SINE Alu 38 358 0 251 286 0 0 chr11 135647125 135647181 -15136372 + L2 LINE L2 3200 3255 -17 204 219 0 0 chr11 135647147 135647188 -15136365 + MIR SINE MIR 218 258 -4 * 672 271 73 6 chr11 135647516 135647693 -15135860 + MIR3 SINE MIR 20 208 0 280 323 61 0 chr11 135648003 135648102 -15135451 - MIR SINE MIR -109 153 49 201 241 63 13 chr11 135648549 135648628 -15134925 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 283 127 32 16 chr11 135648644 135648707 -15134846 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 496 356 50 0 chr11 135652304 135652526 -15131027 + MIR SINE MIR 9 241 -21 2237 121 0 3 chr11 135652907 135653263 -15130290 - AluSq SINE Alu 0 355 1 2324 261 49 34 chr11 135653447 135653824 -15129729 + L1ME1 LINE L1 3382 3752 -2394 2452 88 0 0 chr11 135653824 135654131 -15129422 + AluSg SINE Alu 1 307 -3 2324 261 49 34 chr11 135654131 135654793 -15128760 + L1ME1 LINE L1 3752 4437 -1709 1396 226 64 35 chr11 135654796 135655248 -15128305 + MLT1C LTR MaLR 1 465 -2 3245 227 47 15 chr11 135655250 135656920 -15126633 + L1ME1 LINE L1 4436 6153 -13 840 228 82 5 chr11 135657052 135657258 -15126295 + MER58A DNA MER1_type 2 223 -1 446 294 78 22 chr11 135657732 135657912 -15125641 + MIR SINE MIR 1 190 -72 182 190 0 35 chr11 135659371 135659429 -15124124 + CT-rich Low_complexity Low_complexity 2 57 0 22 0 0 0 chr11 135659875 135659897 -15123656 + AT_rich Low_complexity Low_complexity 1 22 0 259 274 51 34 chr11 135662452 135662569 -15120984 + MIR SINE MIR 144 262 0 222 222 0 0 chr11 135663217 135663271 -15120282 + A-rich Low_complexity Low_complexity 1 54 0 258 136 0 0 chr11 135664526 135664570 -15118983 + (CA)n Simple_repeat Simple_repeat 1 44 0 380 306 189 5 chr11 135664940 135665146 -15118407 - MIR SINE MIR -11 251 8 201 121 0 0 chr11 135665317 135665350 -15118203 + (GA)n Simple_repeat Simple_repeat 2 34 0 183 351 0 18 chr11 135665398 135665455 -15118098 - L2 LINE L2 -8 3264 3209 314 302 87 32 chr11 135665500 135665626 -15117927 + L2 LINE L2 3121 3253 -19 201 121 0 0 chr11 135667161 135667194 -15116359 + (GA)n Simple_repeat Simple_repeat 2 34 0 295 192 27 0 chr11 135667788 135667861 -15115692 - MADE1 DNA Mariner 0 80 6 1700 195 0 0 chr11 135668836 135669128 -15114425 - AluJo SINE Alu -20 292 1 949 172 32 0 chr11 135669640 135669797 -15113756 - FRAM SINE Alu -15 161 1 2162 91 0 4 chr11 135670089 135670365 -15113188 + AluSx SINE Alu 38 312 0 2501 68 0 3 chr11 135671515 135671824 -15111729 - AluY SINE Alu -1 310 3 2433 82 0 19 chr11 135674101 135674420 -15109133 + AluSq SINE Alu 1 313 0 1205 281 59 45 chr11 135674786 135675278 -15108275 + LTR33 LTR ERVL 17 515 -6 289 368 26 34 chr11 135675364 135675481 -15108072 + L2 LINE L2 3134 3249 -23 2189 114 0 0 chr11 135675966 135676265 -15107288 - AluSq SINE Alu -14 299 1 1985 122 31 3 chr11 135677490 135677777 -15105776 - AluSq SINE Alu -18 295 1 1075 80 7 7 chr11 135677901 135678051 -15105502 - L1PB2 LINE L1 -7 6144 5995 2457 126 55 24 chr11 135678714 135679135 -15104418 - Tigger2a DNA MER2_type 0 434 1 1613 197 0 26 chr11 135679246 135679551 -15104002 - AluJo SINE Alu -11 301 5 557 168 48 0 chr11 135679689 135679814 -15103739 - L1MA7 LINE L1 0 6291 6161 21 0 0 0 chr11 135680528 135680549 -15103004 + AT_rich Low_complexity Low_complexity 1 21 0 462 370 129 28 chr11 135681347 135681999 -15101554 - L2 LINE L2 0 3272 2553 2065 201 11 5 chr11 135682734 135683280 -15100273 - MER82 DNA MER2_type 0 653 7 2086 195 79 13 chr11 135683375 135683930 -15099623 - L1MC4a LINE L1 -1 7807 7216 1962 152 8 8 chr11 135684066 135684422 -15099131 - L1MA4 LINE L1 0 6300 5945 196 302 0 16 chr11 135684568 135684631 -15098922 - L2 LINE L2 -219 3053 2992 328 328 67 22 chr11 135684649 135684783 -15098770 - L2 LINE L2 0 3272 3133 1052 304 68 93 chr11 135684866 135685845 -15097708 - L3 LINE CR1 -14 1563 609 1332 127 19 87 chr11 135686581 135686904 -15096649 + AluY SINE Alu 1 301 -10 1870 169 0 10 chr11 135688308 135688603 -15094950 + AluJo SINE Alu 1 292 -20 5711 89 21 7 chr11 135689201 135690051 -15093502 + L1PA10 LINE L1 5306 6167 -1 446 294 78 22 chr11 135691193 135691373 -15092180 - MIR SINE MIR -72 190 1 840 228 82 5 chr11 135691847 135692053 -15091500 - MER58A DNA MER1_type -1 223 2 3245 227 47 15 chr11 135692185 135693855 -15089698 - L1ME1 LINE L1 -13 6153 4436 1421 227 62 35 chr11 135693857 135694310 -15089243 - MLT1C LTR MaLR -2 465 1 2366 260 49 33 chr11 135694313 135694974 -15088579 - L1ME1 LINE L1 -1709 4437 3751 2452 88 0 0 chr11 135694974 135695281 -15088272 - AluSg SINE Alu -3 307 1 2366 260 49 33 chr11 135695281 135695658 -15087895 - L1ME1 LINE L1 -2395 3751 3382 2238 121 0 3 chr11 135695842 135696198 -15087355 + AluSq SINE Alu 1 355 0 496 356 50 0 chr11 135696579 135696801 -15086752 - MIR SINE MIR -21 241 9 283 127 32 16 chr11 135700399 135700462 -15083091 + (CATATA)n Simple_repeat Simple_repeat 1 64 0 201 241 63 13 chr11 135700478 135700557 -15082996 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 280 323 61 0 chr11 135701004 135701103 -15082450 + MIR SINE MIR 49 153 -109 672 271 73 6 chr11 135701413 135701590 -15081963 - MIR3 SINE MIR 0 208 20 204 219 0 0 chr11 135701918 135701959 -15081594 - MIR SINE MIR -4 258 218 * 251 286 0 0 chr11 135701925 135701981 -15081572 - L2 LINE L2 -17 3255 3200 2199 102 0 13 chr11 135702217 135702239 -15081314 - AluSc SINE Alu -9 300 279 327 78 0 0 chr11 135702239 135702290 -15081263 + (GTTTG)n Simple_repeat Simple_repeat 3 53 0 2199 102 0 13 chr11 135702290 135702571 -15080982 - AluSc SINE Alu -30 279 1 219 310 20 40 chr11 135702571 135702671 -15080882 + L2 LINE L2 3216 3313 0 2056 210 29 88 chr11 135703533 135703857 -15079696 - L1MB8 LINE L1 -9 6169 5904 2038 150 13 0 chr11 135703857 135704164 -15079389 - AluSx SINE Alu -1 311 1 2056 210 29 88 chr11 135704164 135704525 -15079028 - L1MB8 LINE L1 -274 5904 5524 186 0 88 0 chr11 135705323 135705357 -15078196 + (TATAA)n Simple_repeat Simple_repeat 5 41 0 256 329 42 51 chr11 135705369 135705585 -15077968 - L2 LINE L2 -231 3041 2828 311 309 73 8 chr11 135705856 135705979 -15077574 + MER5A DNA MER1_type 37 167 -22 288 256 24 12 chr11 135705910 135705992 -15077561 - MER5A DNA MER1_type -86 103 21 * 245 189 0 19 chr11 135706370 135706423 -15077130 + CT-rich Low_complexity Low_complexity 2 53 0 621 279 88 9 chr11 135706894 135707120 -15076433 - MIR SINE MIR -1 261 18 687 202 133 27 chr11 135707289 135707477 -15076076 + MER63A DNA MER1_type 1 208 -2 266 191 262 36 chr11 135708109 135708193 -15075360 - MIR SINE MIR -50 212 110 1921 147 0 23 chr11 135708340 135708647 -15074906 - AluJo SINE Alu -12 300 1 493 279 90 54 chr11 135709064 135709212 -15074341 - MIR SINE MIR -9 253 93 2172 116 0 3 chr11 135709212 135709506 -15074047 + AluSg SINE Alu 1 293 -17 493 279 90 54 chr11 135709506 135709579 -15073974 - MIR SINE MIR -169 93 24 520 302 12 6 chr11 135709661 135709830 -15073723 - L3b LINE CR1 -138 1445 1276 272 27 27 0 chr11 135711403 135711440 -15072113 + (TTCC)n Simple_repeat Simple_repeat 4 41 0 240 301 14 0 chr11 135711442 135711515 -15072038 - L2 LINE L2 -4 3309 3236 688 284 84 13 chr11 135711801 135712100 -15071453 + L2 LINE L2 1391 1710 -1604 3123 275 47 27 chr11 135712453 135713520 -15070033 + L2 LINE L2 1724 2811 -503 1786 170 3 17 chr11 135713861 135714149 -15069404 - AluJb SINE Alu -19 293 10 381 315 56 56 chr11 135716235 135716413 -15067140 - MIR3 SINE MIR -12 196 19 439 170 50 0 chr11 135716817 135716917 -15066636 - L1PA15 LINE L1 0 6165 6061 228 162 14 27 chr11 135716917 135716991 -15066562 + (TA)n Simple_repeat Simple_repeat 1 73 0 655 145 0 0 chr11 135717025 135717142 -15066411 + L1 LINE L1 3850 3966 -2180 2959 140 4 8 chr11 135717148 135717640 -15065913 - L1PA15 LINE L1 -109 6056 5567 410 232 219 26 chr11 135718091 135718242 -15065311 + MER5A DNA MER1_type 10 189 0 2088 140 47 16 chr11 135718435 135718799 -15064754 + THE1C LTR MaLR 1 375 0 1898 151 52 3 chr11 135718904 135719195 -15064358 + AluSx SINE Alu 1 305 -7 2263 131 0 0 chr11 135719352 135719664 -15063889 - AluSx SINE Alu 0 312 1 5532 156 37 28 chr11 135719664 135721264 -15062289 - L1PBa LINE L1 -3237 3625 2002 2201 131 0 0 chr11 135721264 135721570 -15061983 - AluSc SINE Alu -3 306 1 5532 156 37 28 chr11 135721570 135721793 -15061760 - L1PBa LINE L1 -4860 2002 1783 1929 213 62 10 chr11 135721807 135722389 -15061164 - L1M4 LINE L1 -5103 1439 828 1189 234 201 9 chr11 135722390 135722814 -15060739 - MLT1D LTR MaLR 0 505 1 505 217 0 35 chr11 135722823 135722938 -15060615 - L1M4 LINE L1 -5723 819 709 1603 299 11 14 chr11 135722946 135723512 -15060041 - L1M4 LINE L1 -5971 571 8 843 210 84 8 chr11 135723522 135723784 -15059769 - L1MC/D LINE L1 -588 5578 5300 462 236 0 0 chr11 135723778 135723888 -15059665 - L1MC/D LINE L1 -1199 4947 4838 * 688 300 69 46 chr11 135723890 135724280 -15059273 - L1MCc LINE L1 -5130 1293 895 403 296 34 10 chr11 135724278 135724484 -15059069 - L1MC/D LINE L1 -2208 3938 3728 * 357 238 37 55 chr11 135724655 135724819 -15058734 - L1MC/D LINE L1 -2911 3235 3075 21 0 0 0 chr11 135725026 135725047 -15058506 + AT_rich Low_complexity Low_complexity 1 21 0 1368 246 60 18 chr11 135725168 135725669 -15057884 - L1M4 LINE L1 -1142 5004 4483 201 186 0 47 chr11 135727492 135727535 -15056018 + MER91B DNA MER1_type 21 61 -129 2108 129 0 7 chr11 135727606 135727908 -15055645 + AluSx SINE Alu 1 300 -12 182 336 118 0 chr11 135729942 135730052 -15053501 - MIR SINE MIR -58 204 82 571 146 0 0 chr11 135731650 135731746 -15051807 - L1MD3 LINE L1 0 7995 7900 2464 62 0 13 chr11 135731935 135732240 -15051313 - AluY SINE Alu -10 301 1 287 272 9 0 chr11 135733984 135734098 -15049455 + (TA)n Simple_repeat Simple_repeat 1 115 0 285 340 125 12 chr11 135735330 135735753 -15047800 + L2 LINE L2 1913 2383 -931 2330 59 0 11 chr11 135735828 135736137 -15047416 - AluY SINE Alu 0 306 1 183 80 0 0 chr11 135736421 135736446 -15047107 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 891 212 159 34 chr11 135736951 135737366 -15046187 - MLT1C LTR MaLR 0 467 1 232 324 0 0 chr11 135737686 135737754 -15045799 + (CTA)n Simple_repeat Simple_repeat 1 68 0 436 287 34 67 chr11 135737767 135737976 -15045577 - MIR SINE MIR -6 256 55 410 301 119 11 chr11 135738694 135738870 -15044683 - MIR SINE MIR -1 261 67 390 21 0 0 chr11 135739532 135739579 -15043974 + (TG)n Simple_repeat Simple_repeat 1 47 0 240 35 0 0 chr11 135739578 135739607 -15043946 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 218 250 60 48 chr11 135739964 135740048 -15043505 - MIR SINE MIR -74 188 104 572 289 42 85 chr11 135740164 135740424 -15043129 + MIR SINE MIR 2 250 -12 367 232 125 73 chr11 135740440 135740712 -15042841 + MER46C DNA MER2_type 2 287 -51 966 292 38 36 chr11 135741025 135741474 -15042079 - LTR16B LTR ERVL -12 452 3 253 167 0 37 chr11 135741931 135741985 -15041568 - L1MD3 LINE L1 -43 7952 7901 2359 106 0 0 chr11 135742038 135742339 -15041214 - AluSx SINE Alu -11 301 1 311 365 115 4 chr11 135743284 135743544 -15040009 - L2 LINE L2 -926 2388 2100 292 305 137 8 chr11 135744938 135745069 -15038484 - L2 LINE L2 0 3313 3166 635 312 41 34 chr11 135745218 135745510 -15038043 + MLT1I LTR MaLR 98 391 -18 1168 110 150 0 chr11 135745577 135745777 -15037776 - MER30 DNA MER1_type 0 230 1 180 0 0 0 chr11 135745815 135745835 -15037718 + (T)n Simple_repeat Simple_repeat 1 20 0 494 208 7 0 chr11 135745982 135746126 -15037427 + (TG)n Simple_repeat Simple_repeat 2 146 0 180 0 0 0 chr11 135747340 135747360 -15036193 + (TTG)n Simple_repeat Simple_repeat 2 21 0 199 264 178 35 chr11 135747663 135747837 -15035716 - MIR SINE MIR -8 254 56 22 35 0 0 chr11 135748754 135748783 -15034770 + AT_rich Low_complexity Low_complexity 1 29 0 317 321 49 25 chr11 135748792 135748954 -15034599 + MER117 DNA MER1_type 32 197 0 184 252 93 75 chr11 135751456 135751563 -15031990 - MIR SINE MIR -45 217 109 261 0 0 0 chr11 135751566 135751595 -15031958 + (T)n Simple_repeat Simple_repeat 1 29 0 262 239 176 70 chr11 135752012 135752154 -15031399 + MIR SINE MIR 9 165 -97 294 29 0 0 chr11 135752380 135752415 -15031138 + (TA)n Simple_repeat Simple_repeat 2 36 0 494 273 22 14 chr11 135752813 135752952 -15030601 + MER5A DNA MER1_type 2 141 -48 590 103 0 0 chr11 135752964 135753061 -15030492 - L1MA9 LINE L1 0 6312 6216 517 142 34 153 chr11 135753043 135753219 -15030334 - L1MA9 LINE L1 -40 6272 6118 * 1793 193 5 18 chr11 135753221 135753615 -15029938 + L1 LINE L1 4873 5261 -885 268 282 114 8 chr11 135753642 135753772 -15029781 + MIR3 SINE MIR 43 194 -14 30 69 0 0 chr11 135754029 135754087 -15029466 + AT_rich Low_complexity Low_complexity 1 58 0 514 353 30 17 chr11 135754504 135754736 -15028817 + MIR SINE MIR 19 253 -9 1451 178 101 21 chr11 135755351 135755688 -15027865 + MLT1A1 LTR MaLR 2 365 0 280 291 25 0 chr11 135755967 135756046 -15027507 + L2 LINE L2 3229 3309 -4 235 317 178 0 chr11 135756347 135756448 -15027105 + L2 LINE L2 3144 3262 -10 376 280 27 73 chr11 135756560 135756710 -15026843 - L2 LINE L2 -3 3310 3168 1966 136 10 3 chr11 135756757 135757059 -15026494 + AluSc SINE Alu 1 304 -5 4061 37 0 0 chr11 135757197 135757680 -15025873 - L1PA3 LINE L1 -3 6152 5670 216 266 96 43 chr11 135758593 135758687 -15024866 + MIR SINE MIR 36 134 -128 26 64 0 0 chr11 135759575 135759622 -15023931 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr11 135759649 135759670 -15023883 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr11 135760227 135760254 -15023299 + AT_rich Low_complexity Low_complexity 1 27 0 2173 160 0 6 chr11 135760397 135760760 -15022793 + L1PB4 LINE L1 5788 6148 -8 431 264 93 52 chr11 135760946 135761139 -15022414 - MIR SINE MIR -15 247 47 300 245 213 0 chr11 135762618 135762712 -15020841 + MIR3 SINE MIR 85 198 -10 264 331 14 62 chr11 135764096 135764108 -15019445 - MIR SINE MIR -97 165 154 328 248 95 19 chr11 135764108 135764213 -15019340 + MER81 DNA DNA 1 113 -1 264 331 14 62 chr11 135764213 135764345 -15019208 - MIR SINE MIR -108 154 28 968 279 12 12 chr11 135764748 135764995 -15018558 - MIR SINE MIR -2 260 14 374 153 31 20 chr11 135767075 135767173 -15016380 + CT-rich Low_complexity Low_complexity 4 102 0 362 287 52 9 chr11 135767671 135767786 -15015767 + MIR SINE MIR 119 238 -24 208 79 53 0 chr11 135767869 135767907 -15015646 + (CA)n Simple_repeat Simple_repeat 1 40 0 376 293 0 9 chr11 135767996 135768112 -15015441 - MIR SINE MIR -13 249 135 1570 190 53 15 chr11 135768193 135768530 -15015023 + MLT1A1 LTR MaLR 5 354 -11 4085 272 72 43 chr11 135769267 135771135 -15012418 + L2 LINE L2 1388 3313 0 857 198 10 74 chr11 135771669 135771871 -15011682 + MER5A DNA MER1_type 1 189 0 309 284 0 59 chr11 135772626 135772689 -15010864 - L2 LINE L2 -19 3253 3197 2125 138 3 3 chr11 135772689 135773000 -15010553 - AluSx SINE Alu 0 312 2 309 284 0 59 chr11 135773000 135773038 -15010515 - L2 LINE L2 -75 3197 3158 193 333 27 13 chr11 135773595 135773670 -15009883 + MIR SINE MIR 31 106 -102 1862 180 15 0 chr11 135773852 135774186 -15009367 + MER2 DNA MER2_type 3 341 -3 711 319 39 4 chr11 135775222 135775454 -15008099 - MIR SINE MIR -10 252 13 295 345 28 21 chr11 135775476 135775618 -15007935 - MIR SINE MIR -98 164 22 193 266 78 102 chr11 135775720 135775976 -15007577 - L2 LINE L2 -34 3279 3030 285 221 70 0 chr11 135776745 135776831 -15006722 + MER103 DNA DNA 73 164 -2 25 83 0 0 chr11 135777800 135777860 -15005693 + AT_rich Low_complexity Low_complexity 1 60 0 301 281 151 14 chr11 135777977 135778123 -15005430 - MIR SINE MIR -51 211 46 181 348 58 14 chr11 135778600 135778738 -15004815 + L2 LINE L2 3169 3312 -1 264 210 16 0 chr11 135779327 135779389 -15004164 + MLT1K LTR MaLR 522 584 -4 2065 148 7 0 chr11 135779407 135779711 -15003842 + AluSx SINE Alu 1 306 -6 2111 133 0 0 chr11 135779736 135780022 -15003531 + AluJo SINE Alu 1 286 -26 255 266 168 18 chr11 135780387 135780500 -15003053 - L2 LINE L2 -1 3271 3142 2175 96 27 14 chr11 135780652 135780945 -15002608 - AluSg SINE Alu -13 297 1 185 348 29 0 chr11 135781242 135781311 -15002242 + L3b LINE CR1 1508 1578 -5 369 167 0 0 chr11 135782056 135782116 -15001437 + L2 LINE L2 3254 3313 0 302 306 115 33 chr11 135782856 135783192 -15000361 + L2 LINE L2 2706 3062 -210 198 293 61 24 chr11 135783298 135783380 -15000173 + L2 LINE L2 3229 3313 0 216 306 82 10 chr11 135784139 135784195 -14999358 + MIR SINE MIR 50 101 -161 6018 53 1 3 chr11 135784195 135784948 -14998605 + L1PA5 LINE L1 5403 6154 0 216 306 82 10 chr11 135784948 135784989 -14998564 + MIR SINE MIR 101 154 -108 904 249 32 0 chr11 135785100 135785317 -14998236 - MER58A DNA MER1_type 0 224 1 214 167 0 0 chr11 135785480 135785516 -14998037 + (CAT)n Simple_repeat Simple_repeat 1 36 0 21 36 0 0 chr11 135785766 135785794 -14997759 + AT_rich Low_complexity Low_complexity 1 28 0 210 91 0 0 chr11 135786821 135786854 -14996699 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 396 0 0 0 chr11 135787264 135787308 -14996245 + (TA)n Simple_repeat Simple_repeat 2 45 0 405 303 37 43 chr11 135787436 135787598 -14995955 - MIR SINE MIR -67 195 35 180 0 0 0 chr11 135789043 135789063 -14994490 + (TCC)n Simple_repeat Simple_repeat 2 21 0 229 315 181 8 chr11 135789360 135789487 -14994066 + MIR SINE MIR 1 149 -113 210 268 113 0 chr11 135789855 135789926 -14993627 + MIR3 SINE MIR 3 81 -127 200 73 73 0 chr11 135790253 135790294 -14993259 + A-rich Low_complexity Low_complexity 2 45 0 572 333 170 18 chr11 135790551 135790993 -14992560 + L3 LINE CR1 1068 1576 -1 343 305 0 51 chr11 135791285 135791403 -14992150 - L3 LINE CR1 -11 1566 1455 284 355 38 53 chr11 135795476 135795794 -14987759 + L2 LINE L2 2430 2742 -572 2346 90 17 3 chr11 135796495 135796796 -14986757 + AluSx SINE Alu 1 305 -7 839 94 0 8 chr11 135797137 135797265 -14986288 + (GGGAA)n Simple_repeat Simple_repeat 3 129 0 429 288 53 35 chr11 135798210 135798380 -14985173 + MIR SINE MIR 90 262 0 197 222 0 0 chr11 135799142 135799194 -14984359 + MIR SINE MIR 98 148 -114 399 287 102 109 chr11 135799662 135799927 -14983626 + L2 LINE L2 3010 3272 0 247 274 128 26 chr11 135799983 135800100 -14983453 - L3b LINE CR1 -177 1406 1278 187 232 179 27 chr11 135800291 135800403 -14983150 - L2 LINE L2 -9 3304 3176 206 42 0 0 chr11 135802306 135802330 -14981223 + (T)n Simple_repeat Simple_repeat 1 24 0 198 287 74 83 chr11 135802330 135802438 -14981115 + L2 LINE L2 2948 3054 -218 2167 121 0 10 chr11 135802558 135802864 -14980689 - AluSg SINE Alu -7 303 1 468 143 24 12 chr11 135802924 135803008 -14980545 - MER53 DNA DNA 0 189 105 389 216 31 10 chr11 135802931 135803028 -14980525 + MER53 DNA DNA 17 115 -74 * 246 244 61 24 chr11 135803476 135803558 -14979995 - LTR50 LTR ERVL -617 178 94 61 45 0 0 chr11 135803882 135803971 -14979582 + AT_rich Low_complexity Low_complexity 1 89 0 311 335 40 30 chr11 135805598 135805798 -14977755 - MIR SINE MIR -56 206 5 216 97 0 0 chr11 135805963 135805994 -14977559 + (CA)n Simple_repeat Simple_repeat 2 32 0 370 286 54 41 chr11 135806361 135806508 -14977045 - MIR SINE MIR -74 188 40 593 323 57 67 chr11 135806550 135806885 -14976668 + L2 LINE L2 2882 3214 -99 2359 92 0 0 chr11 135806885 135807189 -14976364 - AluSc SINE Alu -5 304 1 593 323 57 67 chr11 135807189 135807289 -14976264 + L2 LINE L2 3214 3313 0 2331 212 29 87 chr11 135808143 135808475 -14975078 - L1MB8 LINE L1 -1 6177 5904 2023 150 13 0 chr11 135808475 135808782 -14974771 - AluSx SINE Alu -1 311 1 2331 212 29 87 chr11 135808782 135809143 -14974410 - L1MB8 LINE L1 -274 5904 5524 186 0 88 0 chr11 135809941 135809975 -14973578 + (TATAA)n Simple_repeat Simple_repeat 5 41 0 208 346 17 62 chr11 135809987 135810166 -14973387 - L2 LINE L2 -231 3041 2871 301 309 73 8 chr11 135810467 135810590 -14972963 + MER5A DNA MER1_type 37 167 -22 282 256 24 12 chr11 135810521 135810603 -14972950 - MER5A DNA MER1_type -86 103 21 * 245 189 0 19 chr11 135810981 135811034 -14972519 + CT-rich Low_complexity Low_complexity 2 53 0 608 279 88 9 chr11 135811505 135811731 -14971822 - MIR SINE MIR -1 261 18 768 202 133 27 chr11 135811900 135812088 -14971465 + MER63A DNA MER1_type 1 208 -2 261 191 262 36 chr11 135812720 135812804 -14970749 - MIR SINE MIR -50 212 110 1822 143 3 29 chr11 135812951 135813259 -14970294 - AluJo SINE Alu -12 300 1 479 284 90 54 chr11 135813676 135813824 -14969729 - MIR SINE MIR -9 253 93 2195 112 0 3 chr11 135813824 135814118 -14969435 + AluSg SINE Alu 1 293 -17 479 284 90 54 chr11 135814118 135814191 -14969362 - MIR SINE MIR -169 93 24 500 302 12 6 chr11 135814273 135814442 -14969111 - L3b LINE CR1 -138 1445 1276 272 27 27 0 chr11 135816015 135816052 -14967501 + (TTCC)n Simple_repeat Simple_repeat 4 41 0 236 301 14 0 chr11 135816054 135816127 -14967426 - L2 LINE L2 -4 3309 3236 680 284 84 13 chr11 135816413 135816712 -14966841 + L2 LINE L2 1391 1710 -1604 3082 275 47 27 chr11 135817065 135818132 -14965421 + L2 LINE L2 1724 2811 -503 1793 163 3 17 chr11 135818473 135818761 -14964792 - AluJb SINE Alu -19 293 10 371 315 56 56 chr11 135820847 135821025 -14962528 - MIR3 SINE MIR -12 196 19 493 170 50 0 chr11 135821429 135821529 -14962024 - L1PA15 LINE L1 0 6165 6061 224 167 0 19 chr11 135821529 135821583 -14961970 + (TA)n Simple_repeat Simple_repeat 1 53 0 241 100 140 0 chr11 135821588 135821638 -14961915 + MLT2A2 LTR ERVL 397 453 0 708 153 0 0 chr11 135821638 135821756 -14961797 + L1 LINE L1 3851 3968 -2178 3196 140 4 8 chr11 135821760 135822252 -14961301 - L1PA15 LINE L1 -109 6056 5567 401 232 219 26 chr11 135822704 135822855 -14960698 + MER5A DNA MER1_type 10 189 0 2241 143 47 16 chr11 135823048 135823412 -14960141 + THE1C LTR MaLR 1 375 0 1872 151 52 3 chr11 135823517 135823808 -14959745 + AluSx SINE Alu 1 305 -7 513 239 38 31 chr11 135825283 135825442 -14958111 - MIR SINE MIR -11 251 92 199 320 21 52 chr11 135826266 135826363 -14957190 + MER5B DNA MER1_type 27 120 -58 240 189 0 0 chr11 135826363 135826437 -14957116 + (TA)n Simple_repeat Simple_repeat 1 74 0 2166 106 0 10 chr11 135827820 135828121 -14955432 + AluSg SINE Alu 1 298 -12 250 234 41 138 chr11 135828641 135828786 -14954767 - MIR3 SINE MIR -32 176 46 1551 162 15 123 chr11 135829476 135829810 -14953743 + AluJo SINE Alu 1 298 -4 1687 199 39 34 chr11 135830083 135830464 -14953089 + MLT1B LTR MaLR 8 390 0 343 264 36 64 chr11 135830517 135830627 -14952926 + L2 LINE L2 3207 3313 0 377 261 66 76 chr11 135830653 135830864 -14952689 + MIR SINE MIR 1 209 -53 1233 305 68 15 chr11 135830915 135831767 -14951786 - L2 LINE L2 0 3313 2415 2000 123 49 0 chr11 135833000 135833284 -14950269 - AluSx SINE Alu -14 298 1 1527 286 42 68 chr11 135833574 135834654 -14948899 - L2 LINE L2 -217 3055 2011 213 271 51 76 chr11 135834758 135834876 -14948677 + L2 LINE L2 3149 3263 -50 213 333 32 0 chr11 135835046 135835109 -14948444 + L3b LINE CR1 1431 1495 -88 318 240 165 9 chr11 135835748 135835883 -14947670 + MIR SINE MIR 38 189 -65 271 311 17 27 chr11 135836004 135836177 -14947376 - MIR SINE MIR 0 262 4 351 286 27 27 chr11 135836211 135836323 -14947230 + MIR SINE MIR 37 148 -60 2146 132 0 0 chr11 135836326 135836622 -14946931 + AluSx SINE Alu 1 296 -16 23 68 0 0 chr11 135838082 135838126 -14945427 + AT_rich Low_complexity Low_complexity 1 44 0 2054 123 49 6 chr11 135838199 135838525 -14945028 + MER46B DNA MER2_type 22 236 0 196 368 154 0 chr11 135838806 135838942 -14944611 - L3b LINE CR1 -76 1507 1351 270 179 0 0 chr11 135839371 135839427 -14944126 + (CA)n Simple_repeat Simple_repeat 2 57 0 2402 81 0 3 chr11 135839755 135840051 -14943502 + AluY SINE Alu 1 295 -16 2135 229 60 30 chr11 135840556 135840832 -14942721 + MER74B LTR ERVL 3 269 -353 1912 151 83 81 chr11 135840832 135841263 -14942290 + MSTB1 LTR MaLR 1 432 0 2135 229 60 30 chr11 135841263 135841523 -14942030 + MER74B LTR ERVL 269 555 -67 1971 127 80 44 chr11 135841646 135842008 -14941545 + THE1C LTR MaLR 1 375 0 241 355 74 16 chr11 135842050 135842171 -14941382 + L2 LINE L2 3145 3272 0 354 333 22 44 chr11 135842200 135842380 -14941173 + MER5A DNA MER1_type 14 189 0 318 50 0 0 chr11 135842704 135842744 -14940809 + (TG)n Simple_repeat Simple_repeat 1 40 0 204 308 192 0 chr11 135844652 135844756 -14938797 - L2 LINE L2 -2 3270 3147 21 0 0 0 chr11 135844862 135844883 -14938670 + AT_rich Low_complexity Low_complexity 1 21 0 210 208 21 21 chr11 135845726 135845774 -14937779 - MIR SINE MIR -59 203 156 234 250 15 15 chr11 135845776 135845844 -14937709 + (TTTA)n Simple_repeat Simple_repeat 3 70 0 998 199 40 0 chr11 135845907 135846108 -14937445 - MER3 DNA MER1_type 0 209 1 1477 205 3 30 chr11 135847031 135847334 -14936219 + AluJb SINE Alu 1 295 -17 4618 33 2 2 chr11 135847496 135848048 -14935505 - L1PA3 LINE L1 0 6155 5604 5076 31 0 0 chr11 135848048 135848924 -14934629 + L1PA3 LINE L1 4754 5629 -526 205 152 43 0 chr11 135848958 135849004 -14934549 + A-rich Low_complexity Low_complexity 2 49 0 21 0 0 0 chr11 135849066 135849087 -14934466 + AT_rich Low_complexity Low_complexity 1 21 0 685 284 32 97 chr11 135849853 135850163 -14933390 - L2 LINE L2 -505 2809 2520 293 306 59 19 chr11 135852508 135852641 -14930912 + MIR SINE MIR 15 150 -64 613 299 36 13 chr11 135852902 135853126 -14930427 - MIR SINE MIR -20 242 14 224 344 73 57 chr11 135853647 135853839 -14929714 - L2 LINE L2 -74 3198 3004 848 248 53 18 chr11 135853863 135854089 -14929464 - MIR SINE MIR -26 236 3 335 303 79 24 chr11 135854560 135854725 -14928828 - L3b LINE CR1 -133 1450 1277 629 271 68 5 chr11 135854765 135854974 -14928579 + MIR SINE MIR 30 256 -6 219 36 0 0 chr11 135855826 135855854 -14927699 + (TG)n Simple_repeat Simple_repeat 2 29 0 186 203 219 16 chr11 135857088 135857152 -14926401 + MIR SINE MIR 111 187 -75 640 308 72 13 chr11 135857153 135857390 -14926163 - MIR SINE MIR 0 262 12 490 364 74 27 chr11 135858624 135858921 -14924632 + L2 LINE L2 2962 3272 0 187 261 160 34 chr11 135859030 135859149 -14924404 + MIR SINE MIR 79 212 -50 186 150 0 0 chr11 135859913 135859953 -14923600 + (CA)n Simple_repeat Simple_repeat 2 41 0 209 311 0 11 chr11 135860130 135860220 -14923333 + A-rich Low_complexity Low_complexity 5 93 0 2317 106 0 0 chr11 135860222 135860523 -14923030 + AluSg SINE Alu 1 301 -9 311 293 10 0 chr11 135863369 135863468 -14920085 + MLT1J2 LTR MaLR 65 164 -286 394 140 28 19 chr11 135863480 135863587 -14919966 + (TA)n Simple_repeat Simple_repeat 2 109 0 2109 87 0 8 chr11 135863618 135863884 -14919669 - AluY SINE Alu -19 292 29 2236 98 27 3 chr11 135863888 135864184 -14919369 - AluSq SINE Alu -10 303 1 23 0 0 0 chr11 135864688 135864711 -14918842 + AT_rich Low_complexity Low_complexity 1 23 0 423 0 0 0 chr11 135865025 135865072 -14918481 + (CA)n Simple_repeat Simple_repeat 2 48 0 1465 154 16 130 chr11 135865083 135865460 -14918093 + MER7A DNA MER2_type 14 345 -1 326 211 78 120 chr11 135866866 135866888 -14916665 - MIR SINE MIR -120 142 121 2077 127 3 3 chr11 135866888 135867187 -14916366 + AluSx SINE Alu 1 299 -13 2245 80 0 13 chr11 135867189 135867666 -14915887 + AluY SINE Alu 1 311 0 326 211 78 120 chr11 135867666 135867782 -14915771 - MIR SINE MIR -142 120 7 319 336 104 27 chr11 135868404 135868624 -14914929 - MIR SINE MIR -6 256 20 1329 125 62 36 chr11 135868736 135868960 -14914593 + MER30 DNA MER1_type 1 230 0 524 325 64 1 chr11 135869266 135869493 -14914060 + MIR SINE MIR 20 256 -6 1026 165 43 35 chr11 135869545 135869800 -14913753 - L1MA5 LINE L1 0 6300 6044 2453 123 63 35 chr11 135869800 135869866 -14913687 + L1MA5A LINE L1 5557 5620 -677 2103 113 7 0 chr11 135869866 135870180 -14913373 - AluSq SINE Alu 0 317 2 2453 123 63 35 chr11 135870180 135870575 -14912978 + L1MA5A LINE L1 5620 6032 -265 408 281 140 12 chr11 135871538 135871709 -14911844 + MIR SINE MIR 48 240 -22 273 146 0 0 chr11 135872073 135872121 -14911432 + (GA)n Simple_repeat Simple_repeat 1 48 0 207 259 9 36 chr11 135872348 135872460 -14911093 + (CTA)n Simple_repeat Simple_repeat 1 109 0 466 362 35 0 chr11 135873622 135873821 -14909732 + MIR SINE MIR 49 254 -8 290 162 73 15 chr11 135873858 135873994 -14909559 + (TA)n Simple_repeat Simple_repeat 2 145 0 216 192 44 60 chr11 135873947 135874129 -14909424 + (ATATG)n Simple_repeat Simple_repeat 2 180 0 * 326 109 64 0 chr11 135874183 135874293 -14909260 + (TA)n Simple_repeat Simple_repeat 2 118 0 218 294 78 20 chr11 135874328 135874430 -14909123 - MIR SINE MIR -66 142 35 2046 134 16 7 chr11 135874678 135874983 -14908570 - AluSx SINE Alu -4 308 1 228 67 0 0 chr11 135875103 135875133 -14908420 + (CAA)n Simple_repeat Simple_repeat 1 30 0 210 235 25 99 chr11 135875404 135875485 -14908068 - MIR SINE MIR -102 160 86 444 276 47 24 chr11 135875885 135876012 -14907541 - L2 LINE L2 -5 3267 3138 4132 179 42 9 chr11 135876017 135877149 -14906404 + L1MB3 LINE L1 4988 6154 -29 220 350 51 25 chr11 135877894 135878051 -14905502 - L2 LINE L2 -7 3306 3146 1503 227 95 20 chr11 135879481 135879935 -14903618 + L1ME1 LINE L1 5629 6116 -50 22 56 0 0 chr11 135879991 135880027 -14903526 + AT_rich Low_complexity Low_complexity 1 36 0 276 259 59 12 chr11 135880529 135880614 -14902939 - MIR3 SINE MIR -48 160 72 529 315 30 10 chr11 135881022 135881219 -14902334 + MIR3 SINE MIR 7 207 -1 355 269 147 13 chr11 135881387 135881543 -14902010 + MIR SINE MIR 15 191 -71 235 330 239 17 chr11 135881852 135882149 -14901404 + L2 LINE L2 2261 2623 -691 1780 186 22 3 chr11 135882505 135882828 -14900725 - MSTB LTR MaLR 0 426 98 2443 22 0 7 chr11 135882828 135883282 -14900271 + AluY SINE Alu 20 311 0 318 219 97 79 chr11 135883284 135883398 -14900155 - MIR SINE MIR -140 122 7 319 336 104 27 chr11 135884020 135884240 -14899313 - MIR SINE MIR -6 256 20 1329 125 62 36 chr11 135884352 135884576 -14898977 + MER30 DNA MER1_type 1 230 0 524 325 64 1 chr11 135884882 135885109 -14898444 + MIR SINE MIR 20 256 -6 1026 165 43 35 chr11 135885161 135885416 -14898137 - L1MA5 LINE L1 0 6300 6044 2453 123 63 35 chr11 135885416 135885482 -14898071 + L1MA5A LINE L1 5557 5620 -677 2103 113 7 0 chr11 135885482 135885796 -14897757 - AluSq SINE Alu 0 317 2 2453 123 63 35 chr11 135885796 135886191 -14897362 + L1MA5A LINE L1 5620 6032 -265 408 281 140 12 chr11 135887154 135887325 -14896228 + MIR SINE MIR 48 240 -22 273 146 0 0 chr11 135887689 135887737 -14895816 + (GA)n Simple_repeat Simple_repeat 1 48 0 593 218 0 0 chr11 135888011 135888135 -14895418 - L1M2 LINE L1 -6725 124 1 2380 248 54 53 chr11 135888136 135889416 -14894137 - L1MEc LINE L1 -4180 2216 936 448 209 22 15 chr11 135889419 135889553 -14894000 + (TA)n Simple_repeat Simple_repeat 2 136 0 227 176 8 67 chr11 135889497 135889616 -14893937 + (TAAA)n Simple_repeat Simple_repeat 4 115 0 * 251 185 59 17 chr11 135889618 135889737 -14893816 + (TATAA)n Simple_repeat Simple_repeat 2 125 0 2354 84 3 6 chr11 135889852 135890163 -14893390 - AluSq SINE Alu -3 310 1 908 283 47 11 chr11 135890163 135890439 -14893114 - L2 LINE L2 -584 2730 2445 6053 126 36 28 chr11 135890444 135890665 -14892888 - L1MA2 LINE L1 0 7723 7505 2058 146 3 0 chr11 135890665 135890966 -14892587 - AluSx SINE Alu -10 302 1 6053 126 36 28 chr11 135890966 135891717 -14891836 - L1MA2 LINE L1 -218 7505 6728 1512 211 18 0 chr11 135891717 135892024 -14891529 + AluJb SINE Alu 1 312 0 6053 126 36 28 chr11 135892024 135892643 -14890910 - L1MA2 LINE L1 -995 6728 6115 11643 173 27 6 chr11 135892861 135895777 -14887776 - L1MA2 LINE L1 -1439 6126 3150 43 0 0 0 chr11 135895785 135895828 -14887725 + AT_rich Low_complexity Low_complexity 1 43 0 5339 157 18 11 chr11 135895828 135897376 -14886177 - L1PB1 LINE L1 -8 7562 6009 1399 257 32 2 chr11 135897379 135897842 -14885711 - L1MA2 LINE L1 -6381 1185 709 16487 161 29 19 chr11 135897849 135900988 -14882565 - L1PB1 LINE L1 -4385 3180 12 1702 239 85 47 chr11 135901003 135901323 -14882230 - L2 LINE L2 -893 2421 2068 369 0 0 0 chr11 135901323 135901364 -14882189 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1702 239 85 47 chr11 135901364 135901621 -14881932 - L2 LINE L2 -1246 2068 1822 3124 198 40 21 chr11 135901621 135902390 -14881163 + L1MB8 LINE L1 5378 6161 -17 2135 297 52 4 chr11 135902408 135903106 -14880447 - L2 LINE L2 -1480 1834 1104 715 288 72 13 chr11 135903107 135903524 -14880029 - LTR16A LTR ERVL -4 453 1 444 320 0 8 chr11 135904248 135904370 -14879183 - L2 LINE L2 -2062 1252 1132 218 337 90 60 chr11 135904392 135904500 -14879053 + L2 LINE L2 2432 2535 -779 2039 131 0 0 chr11 135904500 135904833 -14878720 + AluSx SINE Alu 1 333 0 218 337 90 60 chr11 135904833 135905088 -14878465 + L2 LINE L2 2535 2807 -507 2391 79 3 0 chr11 135905291 135905582 -14877971 - AluSp SINE Alu -21 292 1 383 274 88 0 chr11 135905638 135905751 -14877802 + L2 LINE L2 3191 3313 0 195 139 0 0 chr11 135906569 135906605 -14876948 + (TG)n Simple_repeat Simple_repeat 2 37 0 999 74 17 23 chr11 135907700 135907875 -14875678 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 23 33 0 0 chr11 135908735 135908765 -14874788 + AT_rich Low_complexity Low_complexity 1 30 0 279 54 0 0 chr11 135909683 135909720 -14873833 + (TG)n Simple_repeat Simple_repeat 1 37 0 204 317 56 78 chr11 135910455 135910597 -14872956 - MIR SINE MIR -43 219 81 434 241 135 23 chr11 135910889 135911022 -14872531 + MIR SINE MIR 105 252 -10 2603 40 0 0 chr11 135911456 135911756 -14871797 + AluY SINE Alu 1 300 -11 1995 153 0 0 chr11 135912111 135912405 -14871148 + AluSx SINE Alu 1 294 -18 7548 123 9 5 chr11 135913155 135915146 -14868407 - L1PA11 LINE L1 0 6174 4151 800 340 35 40 chr11 135916376 135916536 -14867017 - ERVL LTR ERVL -439 5325 5166 2215 125 0 10 chr11 135916536 135916847 -14866706 - AluSq SINE Alu -5 308 1 800 340 35 40 chr11 135916847 135917262 -14866291 - ERVL LTR ERVL -598 5166 4753 520 342 32 9 chr11 135917260 135917576 -14865977 - ERVL LTR ERVL -882 4603 4281 * 389 197 71 94 chr11 135917590 135917717 -14865836 + MER5C DNA MER1_type 1 124 -200 1548 148 7 56 chr11 135917823 135918093 -14865460 - AluJb SINE Alu -27 285 29 568 314 96 22 chr11 135918211 135918533 -14865020 - ERVL LTR ERVL -1455 4309 3964 933 199 63 51 chr11 135918638 135919054 -14864499 + MLT1D LTR MaLR 22 467 0 357 159 0 0 chr11 135919109 135919172 -14864381 + (TA)n Simple_repeat Simple_repeat 2 64 0 574 296 83 0 chr11 135919615 135919845 -14863708 - ERVL LTR ERVL -2349 3305 3057 4812 143 67 26 chr11 135923323 135924449 -14859104 - L1MA8 LINE L1 -6 6285 5116 2235 128 0 0 chr11 135924659 135924957 -14858596 - AluSx SINE Alu -14 298 1 6043 93 13 18 chr11 135925259 135926773 -14856780 + L1PA6 LINE L1 4642 6151 -3 619 213 71 0 chr11 135926909 135927050 -14856503 - MER96 DNA MER1_type? -8 167 17 897 338 115 42 chr11 135927055 135928347 -14855206 + L2 LINE L2 1861 3250 -22 1323 295 24 20 chr11 135929533 135930119 -14853434 - L2 LINE L2 0 3313 2725 204 40 0 0 chr11 135930126 135930151 -14853402 + (T)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr11 135930175 135930198 -14853355 + GC_rich Low_complexity Low_complexity 1 23 0 403 253 13 25 chr11 135930477 135930635 -14852918 + AluSq SINE Alu 152 307 -6 2284 79 0 0 chr11 135930640 135930943 -14852610 + AluY SINE Alu 1 303 0 2345 267 37 19 chr11 135931006 135931898 -14851655 + L1ME3A LINE L1 5262 6169 -1 258 32 0 0 chr11 135931979 135932010 -14851543 + (CA)n Simple_repeat Simple_repeat 1 31 0 2252 167 53 7 chr11 135934055 135934468 -14849085 - MSTB1 LTR MaLR 0 432 1 2479 113 113 82 chr11 135934634 135935211 -14848342 + LTR49 LTR ERV1 1 595 0 977 207 0 6 chr11 135935214 135935393 -14848160 + LTR49-int LTR ERV1 1 178 -6153 * 3233 191 102 120 chr11 135935377 135936218 -14847335 + LTR49-int LTR ERV1 279 1143 -5188 252 318 0 0 chr11 135936218 135936284 -14847269 + tRNA-Glu-GAG tRNA tRNA 10 75 0 3233 191 102 120 chr11 135936284 135937034 -14846519 + LTR49-int LTR ERV1 1143 1905 -4426 472 254 32 0 chr11 135937097 135937223 -14846330 + LTR49-int LTR ERV1 1913 2042 -4289 380 225 19 19 chr11 135937221 135937354 -14846199 + LTR49-int LTR ERV1 859 2658 -3673 * 720 239 138 17 chr11 135937362 135937601 -14845952 + MER34C LTR ERV1 160 427 -158 413 249 10 0 chr11 135937602 135937730 -14845823 + MER39B-int LTR ERV1 1096 1191 -3680 867 145 23 86 chr11 135937819 135938040 -14845513 + MER39B-int LTR ERV1 3066 3272 -3059 391 247 0 10 chr11 135938072 135938169 -14845384 + MER39B-int LTR ERV1 3245 3340 -2991 635 197 47 48 chr11 135938372 135938783 -14844770 + MER39B-int LTR ERV1 1728 2190 -2933 367 181 0 117 chr11 135938759 135938947 -14844606 + MER39B-int LTR ERV1 2937 3102 -3656 * 8555 173 52 45 chr11 135938997 135939486 -14844067 + MER39B-int LTR ERV1 3169 3653 -2678 2118 119 0 0 chr11 135939486 135939772 -14843781 - AluSx SINE Alu -26 286 1 8555 173 52 45 chr11 135939772 135941267 -14842286 + MER39B-int LTR ERV1 3653 6104 -227 3427 151 30 38 chr11 135941267 135941925 -14841628 + MER39B LTR ERV1 1 653 0 8555 173 52 45 chr11 135941925 135942155 -14841398 + MER39B-int LTR ERV1 6104 6331 0 2111 140 102 79 chr11 135942157 135942562 -14840991 + LTR49 LTR ERV1 2 425 -170 2537 120 5 41 chr11 135942562 135942724 -14840829 - MER57A LTR ERV1 0 403 237 1975 149 3 0 chr11 135942724 135943012 -14840541 + AluSx SINE Alu 3 291 -21 2537 120 5 41 chr11 135943012 135943267 -14840286 - MER57A LTR ERV1 -166 237 1 2111 140 102 79 chr11 135943267 135943440 -14840113 + LTR49 LTR ERV1 425 593 -2 2045 139 3 3 chr11 135943918 135944219 -14839334 + AluSx SINE Alu 1 301 -11 284 95 0 0 chr11 135944958 135945000 -14838553 + Alu SINE Alu 252 293 -9 276 271 179 13 chr11 135945512 135945663 -14837890 + MIR SINE MIR 39 214 -48 420 258 172 0 chr11 135945669 135945832 -14837721 + MLT1H1 LTR MaLR 22 212 -343 * 555 184 0 0 chr11 135945830 135945928 -14837625 + MLT1G1 LTR MaLR 498 595 0 22 0 0 0 chr11 135946996 135947018 -14836535 + AT_rich Low_complexity Low_complexity 1 22 0 565 225 22 22 chr11 135947238 135947376 -14836177 - MIR3 SINE MIR -48 160 23 366 303 328 5 chr11 135948544 135948739 -14834814 + MIR SINE MIR 3 260 -2 214 197 184 13 chr11 135948765 135948841 -14834712 + MIR SINE MIR 164 252 -10 406 333 7 7 chr11 135948869 135949016 -14834537 - MIR3 SINE MIR -2 206 60 285 75 0 0 chr11 135949017 135949057 -14834496 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 300 333 89 0 chr11 135949249 135949372 -14834181 + MIR3 SINE MIR 69 202 -6 1052 262 146 36 chr11 135950020 135950554 -14832999 + MLT1E LTR MaLR 1 593 0 360 0 0 0 chr11 135950566 135950606 -14832947 + (CA)n Simple_repeat Simple_repeat 2 41 0 1590 166 35 56 chr11 135950799 135951118 -14832435 - AluJo SINE Alu 0 312 1 21 0 0 0 chr11 135951440 135951461 -14832092 + AT_rich Low_complexity Low_complexity 1 21 0 852 273 83 0 chr11 135951498 135951762 -14831791 - MER110 LTR ERV1 -20 471 186 624 181 148 4 chr11 135951765 135951997 -14831556 - L1MB5 LINE L1 0 6180 5885 594 247 60 16 chr11 135952003 135952185 -14831368 - MER110 LTR ERV1 -299 192 3 1585 222 62 3 chr11 135952416 135952786 -14830767 + MSTD LTR MaLR 3 394 -2 6260 225 45 49 chr11 135952795 135953056 -14830497 + MSTD-int LTR MaLR 1 262 -1473 517 29 0 0 chr11 135953056 135953124 -14830429 - L1PA4 LINE L1 0 6155 6088 6260 225 45 49 chr11 135953124 135953445 -14830108 + MSTD-int LTR MaLR 262 583 -1152 1689 180 17 7 chr11 135953445 135953745 -14829808 + AluJb SINE Alu 1 303 -9 6260 225 45 49 chr11 135953745 135954903 -14828650 + MSTD-int LTR MaLR 583 1735 0 1477 195 87 0 chr11 135954903 135955266 -14828287 + MSTD LTR MaLR 1 396 0 1650 269 66 43 chr11 135955276 135955991 -14827562 - MER110-int LTR ERV1 -204 4443 3713 680 198 62 43 chr11 135956646 135956933 -14826620 + MLT1A2 LTR MaLR 1 374 0 26 0 0 0 chr11 135957032 135957058 -14826495 + AT_rich Low_complexity Low_complexity 1 26 0 29 60 0 0 chr11 135957141 135957191 -14826362 + AT_rich Low_complexity Low_complexity 1 50 0 202 56 56 0 chr11 135958368 135958404 -14825149 + CT-rich Low_complexity Low_complexity 1 38 0 3296 116 94 14 chr11 135958508 135959059 -14824494 + LTR49 LTR ERV1 1 595 0 362 278 58 50 chr11 135959522 135959692 -14823861 - MIR SINE MIR -67 141 1 1176 195 30 11 chr11 135959944 135960206 -14823347 + MER58B DNA MER1_type 71 337 -4 3769 25 0 2 chr11 135960206 135960651 -14822902 + L1PA4 LINE L1 5710 6153 -2 452 236 12 85 chr11 135960969 135961106 -14822447 - MIR SINE MIR -21 241 116 1890 171 3 7 chr11 135961106 135961410 -14822143 + AluJo SINE Alu 5 307 -5 452 236 12 85 chr11 135961410 135961437 -14822116 - MIR SINE MIR -146 116 89 1956 100 4 0 chr11 135961929 135962179 -14821374 - AluSx SINE Alu -28 284 34 230 300 200 25 chr11 135962299 135962373 -14821180 + MIR SINE MIR 74 134 -128 893 183 25 35 chr11 135962373 135962575 -14820978 + MER105 DNA DNA 5 204 0 230 300 200 25 chr11 135962575 135962660 -14820893 + MIR SINE MIR 134 261 -1 188 274 89 52 chr11 135962973 135963108 -14820445 + L2 LINE L2 3081 3220 -52 2107 105 23 7 chr11 135964237 135964541 -14819012 - AluSg SINE Alu 0 310 2 997 265 62 3 chr11 135964544 135964884 -14818669 - L1ME LINE L1 -471 5935 5576 293 239 22 52 chr11 135964962 135965096 -14818457 - L1ME LINE L1 -4967 1417 1288 2664 171 9 4 chr11 135965346 135965801 -14817752 - MSTB2 LTR MaLR 0 457 1 286 199 142 28 chr11 135967215 135967356 -14816197 + L1M4 LINE L1 5042 5198 -948 2322 30 40 27 chr11 135967363 135967661 -14815892 + AluY SINE Alu 1 302 -9 2574 40 7 0 chr11 135967671 135967973 -14815580 + AluY SINE Alu 1 304 -7 207 0 0 0 chr11 135968169 135968192 -14815361 + (A)n Simple_repeat Simple_repeat 1 23 0 639 159 9 0 chr11 135968192 135968299 -14815254 - MSTB LTR MaLR -318 108 1 8065 189 29 30 chr11 135968303 135969951 -14813602 - MSTB-int LTR MaLR -5 1646 1 2301 163 57 5 chr11 135969951 135970356 -14813197 - MSTB LTR MaLR 0 426 1 354 302 25 115 chr11 135970367 135970602 -14812951 + L2 LINE L2 2870 3083 -189 324 366 59 23 chr11 135970905 135971126 -14812427 + L2 LINE L2 3009 3237 -35 2032 101 80 0 chr11 135971612 135971899 -14811654 + AluSg SINE Alu 1 310 0 315 0 0 0 chr11 135973488 135973523 -14810030 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2073 110 3 14 chr11 135973523 135973805 -14809748 - AluSx SINE Alu -33 279 1 33 56 0 0 chr11 135974397 135974451 -14809102 + AT_rich Low_complexity Low_complexity 1 54 0 189 0 0 0 chr11 135977626 135977647 -14805906 + (A)n Simple_repeat Simple_repeat 1 21 0 185 0 0 118 chr11 135978055 135978089 -14805464 + (T)n Simple_repeat Simple_repeat 1 30 0 186 43 0 0 chr11 135978230 135978253 -14805300 + (TC)n Simple_repeat Simple_repeat 2 24 0 366 298 245 5 chr11 135982372 135982560 -14800993 + MIR SINE MIR 3 235 -27 1687 166 13 29 chr11 135982625 135982932 -14800621 + AluJo SINE Alu 1 302 -10 957 274 8 16 chr11 135983853 135984105 -14799448 - MIR SINE MIR 0 262 13 1753 156 42 0 chr11 135984403 135984692 -14798861 + AluJo SINE Alu 1 301 -11 731 269 111 5 chr11 135985271 135985676 -14797877 - L1ME4a LINE L1 -126 5995 5548 229 354 0 0 chr11 135985883 135985965 -14797588 + (TA)n Simple_repeat Simple_repeat 2 83 0 622 309 29 29 chr11 135987415 135987658 -14795895 + MIR SINE MIR 12 254 -8 383 262 166 59 chr11 135987666 135987860 -14795693 + MIR SINE MIR 18 224 -38 339 257 92 78 chr11 135988371 135988450 -14795103 - L2 LINE L2 -1 3312 3236 1984 154 0 10 chr11 135988450 135988762 -14794791 + AluSx SINE Alu 1 309 -3 339 257 92 78 chr11 135988762 135988888 -14794665 - L2 LINE L2 -77 3236 3104 1969 153 3 0 chr11 135988952 135989252 -14794301 + AluSx SINE Alu 1 301 -11 240 304 78 104 chr11 135989780 135990089 -14793464 + L2 LINE L2 2972 3272 0 279 306 56 56 chr11 135990270 135990378 -14793175 + L3b LINE CR1 1472 1579 -4 24 0 0 0 chr11 135992094 135992118 -14791435 + AT_rich Low_complexity Low_complexity 1 24 0 370 364 73 57 chr11 135992779 135993627 -14789926 + L2 LINE L2 2409 3267 -5 398 326 22 0 chr11 135993826 135993964 -14789589 - MIR SINE MIR -3 259 119 1818 166 3 0 chr11 135994163 135994447 -14789106 + AluJb SINE Alu 1 285 -27 433 321 38 8 chr11 135995025 135995156 -14788397 + MIR SINE MIR 20 154 -108 821 299 33 8 chr11 135995572 135995816 -14787737 + MIR SINE MIR 12 261 -1 248 295 89 27 chr11 135996290 135996402 -14787151 + MIR SINE MIR 25 143 -65 3371 132 13 0 chr11 135996411 135996950 -14786603 + L1MC1 LINE L1 5783 6328 -5 311 246 36 27 chr11 135997337 135997447 -14786106 + MER96B DNA MER1_type? 2 112 -305 404 203 43 36 chr11 135997492 135997630 -14785923 + MER96B DNA MER1_type? 96 234 -183 246 313 0 38 chr11 135998291 135998371 -14785182 - L2 LINE L2 -3 3269 3193 1347 173 45 79 chr11 135999503 135999907 -14783646 + MLT1B LTR MaLR 1 390 0 291 371 70 46 chr11 135999956 136000325 -14783228 - L2 LINE L2 -337 2977 2600 854 251 72 28 chr11 136001316 136001567 -14781986 + MIR SINE MIR 1 262 0 281 257 188 14 chr11 136001589 136001733 -14781820 + MIR SINE MIR 93 261 -1 369 335 61 6 chr11 136001792 136001956 -14781597 - MIR3 SINE MIR -14 194 22 5446 89 10 11 chr11 136002063 136002256 -14781297 - L1PA14 LINE L1 -5 6156 5964 1964 138 16 13 chr11 136002256 136002567 -14780986 - AluSx SINE Alu 0 312 1 5446 89 10 11 chr11 136002567 136003178 -14780375 - L1PA14 LINE L1 -197 5964 5353 183 204 0 0 chr11 136003775 136003819 -14779734 + CT-rich Low_complexity Low_complexity 4 47 0 373 167 0 22 chr11 136003851 136003941 -14779612 + CT-rich Low_complexity Low_complexity 2 89 0 210 143 0 0 chr11 136004187 136004222 -14779331 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 198 0 0 0 chr11 136005471 136005493 -14778060 + (A)n Simple_repeat Simple_repeat 1 22 0 208 282 29 39 chr11 136006188 136006291 -14777262 - MIR3 SINE MIR -1 207 106 477 0 0 0 chr11 136006542 136006595 -14776958 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 28 0 0 0 chr11 136007002 136007030 -14776523 + AT_rich Low_complexity Low_complexity 1 28 0 247 263 50 40 chr11 136007121 136007220 -14776333 + MIR SINE MIR 45 144 -64 447 337 28 11 chr11 136007946 136008127 -14775426 + MIR SINE MIR 72 255 -7 184 282 86 51 chr11 136008364 136008481 -14775072 + L2 LINE L2 3142 3262 -10 329 230 47 145 chr11 136008978 136009213 -14774340 - L2 LINE L2 -1 3312 3101 29 28 0 0 chr11 136009315 136009351 -14774202 + AT_rich Low_complexity Low_complexity 1 36 0 273 279 164 30 chr11 136009505 136009670 -14773883 - MIR SINE MIR -60 202 16 21 36 0 0 chr11 136010206 136010234 -14773319 + AT_rich Low_complexity Low_complexity 1 28 0 281 292 34 0 chr11 136010644 136010733 -14772820 + MIR SINE MIR 170 261 -1 341 317 126 0 chr11 136010751 136010930 -14772623 + MIR SINE MIR 6 204 -58 641 320 70 57 chr11 136011064 136011436 -14772117 + L2 LINE L2 2887 3263 -9 205 387 24 42 chr11 136012757 136012925 -14770628 - MIR3 SINE MIR -28 180 16 1895 162 133 16 chr11 136013001 136013384 -14770169 - MSTA LTR MaLR 0 428 1 1998 102 0 98 chr11 136014267 136014602 -14768951 - AluSx SINE Alu -10 302 1 242 350 42 0 chr11 136014885 136015005 -14768548 + MIR3 SINE MIR 77 201 -7 431 55 0 0 chr11 136015635 136015690 -14767863 + L1PA8 LINE L1 6105 6159 -13 2476 56 16 0 chr11 136015694 136015998 -14767555 + AluY SINE Alu 1 309 -2 261 273 0 0 chr11 136016106 136016172 -14767381 - MIR SINE MIR -118 144 79 258 375 17 0 chr11 136017054 136017174 -14766379 - L2 LINE L2 -19 3294 3173 2092 114 0 7 chr11 136017631 136017928 -14765625 - AluSg SINE Alu -15 295 1 2212 111 0 7 chr11 136018585 136018882 -14764671 - AluSx SINE Alu -17 295 1 324 316 37 19 chr11 136019278 136019482 -14764071 - MIR SINE MIR -54 208 2 197 331 91 66 chr11 136020986 136021107 -14762446 + L2 LINE L2 3136 3259 -13 7667 69 0 1 chr11 136021883 136023684 -14759869 + L1PA6 LINE L1 4351 6150 -4 1188 193 55 16 chr11 136023706 136024017 -14759536 + MER33 DNA MER1_type 1 323 -1 1653 187 16 16 chr11 136025731 136026041 -14757512 - AluJo SINE Alu -2 310 1 2172 162 25 5 chr11 136026069 136026465 -14757088 - L1MB5 LINE L1 0 6174 5771 417 295 46 20 chr11 136026670 136026823 -14756730 - MIR SINE MIR -62 146 24 369 269 62 69 chr11 136027311 136027369 -14756184 - MIR SINE MIR -51 211 154 1372 13 0 0 chr11 136027369 136027526 -14756027 - L1PA2 LINE L1 -4 6151 5995 369 269 62 69 chr11 136027526 136027627 -14755926 - MIR SINE MIR -108 154 53 1890 120 0 8 chr11 136028140 136028407 -14755146 + AluSx SINE Alu 1 265 -47 288 0 0 0 chr11 136028412 136028444 -14755109 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 390 326 58 41 chr11 136029133 136029305 -14754248 + MIR SINE MIR 29 203 -59 335 240 333 0 chr11 136030600 136030771 -14752782 + MIR SINE MIR 29 256 -6 3810 163 11 3 chr11 136031289 136032005 -14751548 - L1MB3 LINE L1 -4 6179 5458 1800 134 38 0 chr11 136032317 136032579 -14750974 - AluSx SINE Alu -38 274 3 716 75 9 9 chr11 136032727 136032833 -14750720 - L1MB1 LINE L1 -1 6167 6062 479 264 14 40 chr11 136032852 136033000 -14750553 - MIR SINE MIR -115 147 4 181 341 59 24 chr11 136033402 136033487 -14750066 + MIR SINE MIR 161 248 -14 2280 122 0 0 chr11 136033622 136033934 -14749619 + AluSx SINE Alu 1 312 0 23 33 0 0 chr11 136033934 136033964 -14749589 + AT_rich Low_complexity Low_complexity 1 30 0 666 37 0 0 chr11 136034159 136034240 -14749313 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 201 171 0 0 chr11 136034752 136034787 -14748766 + A-rich Low_complexity Low_complexity 1 35 0 546 294 90 28 chr11 136036128 136036522 -14747031 - MIR SINE MIR -11 251 17 288 280 40 0 chr11 136036954 136037029 -14746524 - L2 LINE L2 0 3313 3236 * 388 348 14 73 chr11 136037028 136037384 -14746169 - L2 LINE L2 -871 2443 2109 2251 110 3 0 chr11 136037666 136037965 -14745588 - AluSq SINE Alu -13 300 1 6023 136 1 18 chr11 136037980 136039023 -14744530 - L1PB1 LINE L1 -1 6150 5143 2273 107 0 0 chr11 136039023 136039349 -14744204 - AluSq SINE Alu 0 313 1 6023 136 1 18 chr11 136039349 136039928 -14743625 - L1PB1 LINE L1 -1008 5143 4556 3111 44 0 5 chr11 136040954 136041361 -14742192 - L1P2 LINE L1 -492 5662 5258 3008 53 3 5 chr11 136041361 136041739 -14741814 + L1PA6 LINE L1 5778 6154 0 636 236 12 0 chr11 136041991 136042156 -14741397 - MER96B DNA MER1_type? -242 175 9 21 36 0 0 chr11 136042385 136042413 -14741140 + AT_rich Low_complexity Low_complexity 1 28 0 1278 207 52 8 chr11 136042426 136042793 -14740760 + L1ME3A LINE L1 5019 5401 -745 373 217 11 11 chr11 136042928 136043020 -14740533 + L1ME1 LINE L1 4215 4306 -1840 2114 204 15 11 chr11 136043020 136043476 -14740077 + MLT1C LTR MaLR 1 458 -9 2155 234 52 20 chr11 136043477 136044174 -14739379 + L1ME1 LINE L1 4300 5018 -1128 2077 63 30 43 chr11 136044187 136044487 -14739066 + AluY SINE Alu 1 296 -15 28 48 0 0 chr11 136044650 136044692 -14738861 + AT_rich Low_complexity Low_complexity 1 42 0 3093 220 69 17 chr11 136044692 136045115 -14738438 + L1ME1 LINE L1 5019 5419 -747 1959 118 11 0 chr11 136045115 136045439 -14738114 - AluSx SINE Alu 0 327 1 3093 220 69 17 chr11 136045439 136045667 -14737886 + L1ME1 LINE L1 5419 5634 -532 2417 81 0 0 chr11 136045667 136045962 -14737591 + AluSx SINE Alu 1 295 -17 3093 220 69 17 chr11 136045962 136046400 -14737153 + L1ME1 LINE L1 5634 6162 -4 196 330 9 28 chr11 136047000 136047106 -14736447 - L2 LINE L2 -226 3046 2943 453 300 100 52 chr11 136047558 136047788 -14735765 - MIR SINE MIR -21 241 1 362 252 10 0 chr11 136048120 136048223 -14735330 + L1ME3A LINE L1 5668 5771 -391 3395 167 20 0 chr11 136048236 136048929 -14734624 + L1MA4 LINE L1 3767 4473 -1673 2709 164 14 14 chr11 136048920 136049769 -14733784 + L1MA4 LINE L1 4922 5776 -524 * 1700 156 22 41 chr11 136049774 136050089 -14733464 + AluJo SINE Alu 1 309 -3 217 164 66 0 chr11 136050124 136050185 -14733368 + GA-rich Low_complexity Low_complexity 1 65 0 1007 93 11 33 chr11 136050196 136050378 -14733175 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2589 132 34 30 chr11 136050381 136050658 -14732895 + L1MA4 LINE L1 5769 6050 -250 828 216 0 23 chr11 136050658 136050829 -14732724 + FAM SINE Alu 1 167 -8 2589 132 34 30 chr11 136050829 136051080 -14732473 + L1MA4 LINE L1 6050 6299 -1 359 254 46 8 chr11 136051094 136051224 -14732329 + L1ME3A LINE L1 5772 5906 -264 1136 299 77 38 chr11 136051289 136051903 -14731650 + L1MEc LINE L1 164 809 -5587 2120 172 57 15 chr11 136051903 136052374 -14731179 + L1MB2 LINE L1 5679 6169 -2 1136 299 77 38 chr11 136052374 136052449 -14731104 + L1MEc LINE L1 809 880 -5516 1518 198 25 18 chr11 136052549 136053079 -14730474 - L1M1 LINE L1 -744 5402 4990 203 261 0 0 chr11 136053642 136053688 -14729865 + (CATA)n Simple_repeat Simple_repeat 2 47 0 903 169 7 0 chr11 136053911 136054059 -14729494 - FAM SINE Alu -36 149 1 21 57 0 0 chr11 136054089 136054124 -14729429 + AT_rich Low_complexity Low_complexity 1 35 0 324 299 109 46 chr11 136054279 136054691 -14728862 - L1ME4a LINE L1 -130 5991 5554 1675 275 34 4 chr11 136054693 136055356 -14728197 - HERV16 LTR ERVL -4741 913 195 257 198 62 49 chr11 136055875 136055956 -14727597 + MER58B DNA MER1_type 220 301 -40 479 172 40 30 chr11 136056562 136056661 -14726892 + MIR SINE MIR 40 139 -123 273 57 0 0 chr11 136057981 136058016 -14725537 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 408 207 14 103 chr11 136058130 136058343 -14725210 - L1MC5 LINE L1 -683 7278 7085 487 276 117 28 chr11 136058388 136058874 -14724679 + L1ME3 LINE L1 5615 6161 -9 591 273 96 16 chr11 136059160 136059526 -14724027 + ERVL LTR ERVL 3880 4274 -1490 524 331 62 43 chr11 136059673 136060141 -14723412 + L1 LINE L1 3469 3945 -2201 747 124 0 0 chr11 136060188 136060293 -14723260 + U6 snRNA snRNA 1 105 -2 772 162 0 0 chr11 136060295 136060431 -14723122 + L1P LINE L1 3953 4088 -2058 717 309 65 56 chr11 136060533 136061497 -14722056 - HERV16 LTR ERVL -2081 2915 2146 831 321 39 5 chr11 136061535 136061949 -14721604 - HERV16 LTR ERVL -2966 2030 1603 225 313 122 8 chr11 136062353 136062599 -14720954 - L1ME3A LINE L1 -222 5948 5675 302 321 6 19 chr11 136063575 136063737 -14719816 - L1MC4a LINE L1 -1773 6035 5876 251 242 32 0 chr11 136063831 136063893 -14719660 - FAM SINE Alu -13 166 103 438 227 61 119 chr11 136063918 136064196 -14719357 - L1MC4a LINE L1 -2034 5774 5513 436 253 207 6 chr11 136064229 136064403 -14719150 - L2 LINE L2 -1064 2250 2042 1098 221 14 45 chr11 136065115 136065405 -14718148 - MLT2C1 LTR ERVL -2 395 115 1779 214 79 30 chr11 136066440 136066972 -14716581 - MLT1E3 LTR MaLR -46 578 21 530 264 7 14 chr11 136067198 136067338 -14716215 - MLT1F1 LTR MaLR -8 559 421 401 335 34 3 chr11 136067334 136067627 -14715926 - LTR16B LTR ERVL -56 408 107 * 1953 118 14 3 chr11 136068068 136068357 -14715196 - AluSq SINE Alu -13 300 9 409 250 164 0 chr11 136068439 136068567 -14714986 - L2 LINE L2 -667 2647 2499 1658 159 53 25 chr11 136068647 136068930 -14714623 + AluJb SINE Alu 1 291 -21 270 146 73 0 chr11 136069060 136069115 -14714438 - L1M4 LINE L1 -373 5801 5743 692 275 0 29 chr11 136069175 136069451 -14714102 - L1M4c LINE L1 -4543 1841 1574 3652 78 6 0 chr11 136072257 136072767 -14710786 - L1P4 LINE L1 -350 5818 5306 1870 169 0 10 chr11 136073365 136073660 -14709893 - AluJo SINE Alu -20 292 1 2413 47 0 20 chr11 136075064 136075364 -14708189 - AluY SINE Alu -17 294 1 1052 304 68 93 chr11 136076100 136077079 -14706474 + L3 LINE CR1 609 1563 -14 328 328 67 22 chr11 136077162 136077296 -14706257 + L2 LINE L2 3133 3272 0 196 302 0 16 chr11 136077314 136077377 -14706176 + L2 LINE L2 2992 3053 -219 1962 152 8 8 chr11 136077523 136077879 -14705674 + L1MA4 LINE L1 5945 6300 0 2086 195 79 13 chr11 136078015 136078570 -14704983 + L1MC4a LINE L1 7216 7807 -1 2065 201 11 5 chr11 136078665 136079211 -14704342 + MER82 DNA MER2_type 7 653 0 476 380 123 22 chr11 136079946 136080598 -14702955 + L2 LINE L2 2553 3272 0 21 0 0 0 chr11 136081397 136081418 -14702135 + AT_rich Low_complexity Low_complexity 1 21 0 557 168 48 0 chr11 136082127 136082252 -14701301 + L1MA7 LINE L1 6161 6291 0 1653 184 0 26 chr11 136082390 136082695 -14700858 + AluJo SINE Alu 5 301 -11 2457 126 55 24 chr11 136082806 136083227 -14700326 + Tigger2a DNA MER2_type 1 434 0 1075 80 7 7 chr11 136083890 136084040 -14699513 + L1PB2 LINE L1 5995 6144 -7 1985 122 31 3 chr11 136084164 136084451 -14699102 + AluSq SINE Alu 1 295 -18 2198 114 0 0 chr11 136085675 136085974 -14697579 + AluSq SINE Alu 1 299 -14 289 368 26 34 chr11 136086459 136086576 -14696977 - L2 LINE L2 -23 3249 3134 1170 283 59 45 chr11 136086662 136087154 -14696399 - LTR33 LTR ERVL -6 515 17 2433 82 0 19 chr11 136087520 136087839 -14695714 - AluSq SINE Alu 0 313 1 2501 68 0 3 chr11 136090116 136090425 -14693128 + AluY SINE Alu 3 310 -1 2004 107 0 7 chr11 136091575 136091847 -14691706 - AluSx SINE Alu -1 311 42 180 0 0 0 chr11 136092856 136092876 -14690677 + (GA)n Simple_repeat Simple_repeat 1 20 0 247 256 122 11 chr11 136093489 136093579 -14689974 + MLT1I LTR MaLR 77 176 -233 253 227 191 18 chr11 136093733 136093843 -14689710 + MLT1H LTR MaLR 405 533 -16 1375 122 15 0 chr11 136094870 136095067 -14688486 - AluSg/x SINE Alu -16 296 97 981 166 6 6 chr11 136145129 136145292 -14638261 - AluJo SINE Alu -3 299 137 1148 217 46 41 chr11 136145311 136145566 -14637987 + L1ME1 LINE L1 5170 5420 -746 2206 103 0 0 chr11 136145566 136145866 -14637687 + AluSx SINE Alu 9 308 -4 1148 217 46 41 chr11 136145866 136146028 -14637525 + L1ME1 LINE L1 5420 5580 -586 656 194 23 0 chr11 136146043 136146172 -14637381 - AluJo SINE Alu -176 136 5 1017 228 47 4 chr11 136146176 136146430 -14637123 + L1ME1 LINE L1 5577 5841 -325 235 362 34 13 chr11 136146866 136147015 -14636538 + MIR3 SINE MIR 54 205 -3 2209 80 35 0 chr11 136147015 136147303 -14636250 - AluSx SINE Alu -14 298 1 338 257 70 75 chr11 136147621 136147738 -14635815 - MIR SINE MIR -21 241 124 2309 94 0 3 chr11 136147738 136148036 -14635517 + AluSq SINE Alu 1 297 -16 338 257 70 75 chr11 136148036 136148105 -14635448 - MIR SINE MIR -138 124 56 285 250 128 40 chr11 136148101 136148240 -14635313 - L2 LINE L2 0 3313 3123 * 597 239 43 0 chr11 136149104 136149267 -14634286 - MER5B DNA MER1_type 0 178 9 225 0 0 0 chr11 136149507 136149532 -14634021 + (A)n Simple_repeat Simple_repeat 1 25 0 2193 91 50 3 chr11 136149632 136149930 -14633623 - AluSq SINE Alu -1 312 1 22 0 0 0 chr11 136150150 136150172 -14633381 + AT_rich Low_complexity Low_complexity 1 22 0 483 178 0 0 chr11 136150549 136150650 -14632903 + GA-rich Low_complexity Low_complexity 4 104 0 228 258 75 43 chr11 136150807 136150900 -14632653 - MIR3 SINE MIR -35 173 78 913 85 0 0 chr11 136151258 136151376 -14632177 - AluSx SINE Alu 0 309 192 1434 115 5 0 chr11 136151476 136151667 -14631886 - AluSx SINE Alu -120 192 1 417 257 27 93 chr11 136152564 136152747 -14630806 + MARNA DNA Mariner 413 583 -3 2380 109 0 0 chr11 136152897 136153208 -14630345 + AluSx SINE Alu 1 311 -1 450 254 99 7 chr11 136153239 136153381 -14630172 - MIR SINE MIR -56 206 52 2424 73 0 0 chr11 136153584 136153885 -14629668 - AluY SINE Alu -10 301 1 1505 178 16 67 chr11 136154059 136154373 -14629180 + AluJb SINE Alu 1 298 -14 21 0 0 0 chr11 136154403 136154424 -14629129 + AT_rich Low_complexity Low_complexity 1 21 0 257 322 57 70 chr11 136154464 136154557 -14628996 + MIR SINE MIR 7 100 -162 2512 68 0 10 chr11 136154557 136154868 -14628685 + AluSp SINE Alu 2 309 -4 257 322 57 70 chr11 136154868 136155004 -14628549 + MIR SINE MIR 100 233 -29 269 245 79 43 chr11 136155039 136155178 -14628375 - L2 LINE L2 -164 3149 3006 742 165 0 9 chr11 136155347 136155462 -14628091 + FLAM_C SINE Alu 2 115 -18 819 138 14 58 chr11 136155467 136155605 -14627948 - FLAM_C SINE Alu 0 133 2 25 0 0 0 chr11 136155618 136155643 -14627910 + AT_rich Low_complexity Low_complexity 1 25 0 228 235 0 0 chr11 136155719 136155770 -14627783 + (TTCA)n Simple_repeat Simple_repeat 3 53 0 2118 117 4 0 chr11 136156719 136157025 -14626528 + AluSq SINE Alu 1 307 0 796 194 93 0 chr11 136157025 136157164 -14626389 + AluSg/x SINE Alu 133 284 -28 234 250 13 26 chr11 136157204 136157280 -14626273 + GA-rich Low_complexity Low_complexity 2 76 0 1992 120 10 47 chr11 136157706 136158007 -14625546 + AluSx SINE Alu 1 290 -22 665 235 13 65 chr11 136158026 136158256 -14625297 + L1MC5 LINE L1 7697 7914 -47 2209 103 6 13 chr11 136158261 136158572 -14624981 - AluSg SINE Alu -1 309 1 2268 104 7 3 chr11 136158590 136158897 -14624656 - AluSg SINE Alu -2 308 1 2328 103 3 0 chr11 136158897 136159198 -14624355 - AluSx SINE Alu -10 302 1 494 208 139 0 chr11 136159291 136159392 -14624161 - FLAM_C SINE Alu -16 117 3 2430 81 0 0 chr11 136159898 136160193 -14623360 + AluSx SINE Alu 1 295 -17 252 0 0 0 chr11 136160197 136160225 -14623328 + (CAA)n Simple_repeat Simple_repeat 3 30 0 2247 110 3 0 chr11 136160544 136160843 -14622710 - AluSq SINE Alu -13 300 1 6499 133 1 25 chr11 136160858 136161915 -14621638 - L1PB1 LINE L1 -1 6150 5148 2271 95 0 0 chr11 136161915 136162227 -14621326 - AluSq SINE Alu 0 312 1 6499 133 1 25 chr11 136162227 136162806 -14620747 - L1PB1 LINE L1 -1003 5148 4556 3338 44 0 5 chr11 136163832 136164239 -14619314 - L1P2 LINE L1 -492 5662 5258 2154 67 4 0 chr11 136164239 136164508 -14619045 + L1PA6 LINE L1 5778 6047 -107 1286 14 0 20 chr11 136164608 136164756 -14618797 + L1PA6 LINE L1 6010 6154 0 711 236 12 0 chr11 136165007 136165172 -14618381 - MER96B DNA MER1_type? -242 175 9 1343 221 59 16 chr11 136165370 136165809 -14617744 + L1M4 LINE L1 4944 5401 -745 419 217 11 11 chr11 136165944 136166036 -14617517 + L1M4 LINE L1 4215 4306 -1840 2320 195 18 13 chr11 136166036 136166492 -14617061 + MLT1C LTR MaLR 1 458 -9 2483 232 52 20 chr11 136166493 136167190 -14616363 + L1M4 LINE L1 4300 5018 -1128 2131 63 30 40 chr11 136167203 136167502 -14616051 + AluY SINE Alu 1 296 -15 1374 217 61 14 chr11 136167637 136168127 -14615426 + L1ME LINE L1 4943 5452 -714 405 0 0 0 chr11 136168130 136168175 -14615378 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 419 151 12 23 chr11 136168894 136168980 -14614573 - L1M3 LINE L1 -513 5658 5574 215 323 71 31 chr11 136169042 136169155 -14614398 + L2 LINE L2 3182 3302 -11 2324 65 0 14 chr11 136169155 136169449 -14614104 + AluY SINE Alu 1 290 -21 215 323 71 31 chr11 136169449 136169462 -14614091 + L2 LINE L2 3302 3313 0 3283 194 42 81 chr11 136169622 136169768 -14613785 - L1MA10 LINE L1 -10 6324 6174 279 0 0 0 chr11 136169768 136169799 -14613754 + (TG)n Simple_repeat Simple_repeat 1 31 0 3283 194 42 81 chr11 136169799 136170169 -14613384 - L1MA10 LINE L1 -160 6174 5857 2208 157 21 0 chr11 136170169 136170506 -14613047 + MER7A DNA MER2_type 4 345 -1 3283 194 42 81 chr11 136170506 136170914 -14612639 - L1MA10 LINE L1 -477 5857 5435 21 0 0 0 chr11 136171125 136171146 -14612407 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr11 136171191 136171229 -14612324 + AT_rich Low_complexity Low_complexity 1 38 0 637 131 0 0 chr11 136171753 136171852 -14611701 - MER53 DNA DNA 0 189 91 206 244 83 59 chr11 136171909 136171997 -14611556 + MIR3 SINE MIR 68 157 -51 334 288 181 19 chr11 136172105 136172265 -14611288 + MIR SINE MIR 32 217 -45 198 375 39 0 chr11 136172485 136172589 -14610964 + MIR SINE MIR 111 218 -44 744 203 34 72 chr11 136173704 136174302 -14609251 + MER39B-int LTR ERV1 1707 3102 -2866 259 91 0 0 chr11 136174285 136174329 -14609224 + MER39B-int LTR ERV1 2554 2597 -2526 * 9535 171 51 45 chr11 136174315 136174841 -14608712 + MER39B-int LTR ERV1 3169 3690 -2641 2120 119 0 0 chr11 136174841 136175127 -14608426 - AluSx SINE Alu -26 286 1 9535 171 51 45 chr11 136175127 136176622 -14606931 + MER39B-int LTR ERV1 3690 6104 -227 3738 151 30 38 chr11 136176622 136177280 -14606273 + MER39B LTR ERV1 1 653 0 9535 171 51 45 chr11 136177280 136177510 -14606043 + MER39B-int LTR ERV1 6104 6331 0 2364 140 102 79 chr11 136177512 136177917 -14605636 + LTR49 LTR ERV1 2 425 -170 2743 122 5 41 chr11 136177917 136178079 -14605474 - MER57A LTR ERV1 0 403 237 1961 149 3 0 chr11 136178079 136178367 -14605186 + AluSx SINE Alu 3 291 -21 2743 122 5 41 chr11 136178367 136178622 -14604931 - MER57A LTR ERV1 -166 237 1 2364 140 102 79 chr11 136178622 136178795 -14604758 + LTR49 LTR ERV1 425 593 -2 2033 139 3 3 chr11 136179273 136179574 -14603979 + AluSx SINE Alu 1 301 -11 302 95 0 0 chr11 136180313 136180355 -14603198 + Alu SINE Alu 252 293 -9 271 271 179 13 chr11 136180867 136181018 -14602535 + MIR SINE MIR 39 214 -48 478 258 172 0 chr11 136181024 136181187 -14602366 + MLT1H1 LTR MaLR 22 212 -343 * 603 184 0 0 chr11 136181185 136181283 -14602270 + MLT1G1 LTR MaLR 498 595 0 22 0 0 0 chr11 136182351 136182373 -14601180 + AT_rich Low_complexity Low_complexity 1 22 0 561 225 22 22 chr11 136182594 136182732 -14600821 - MIR3 SINE MIR -48 160 23 348 303 328 5 chr11 136183900 136184095 -14599458 + MIR SINE MIR 3 260 -2 209 197 184 13 chr11 136184121 136184197 -14599356 + MIR SINE MIR 164 252 -10 381 331 7 14 chr11 136184225 136184373 -14599180 - MIR3 SINE MIR -2 206 60 285 75 0 0 chr11 136184374 136184414 -14599139 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 285 333 89 0 chr11 136184606 136184729 -14598824 + MIR3 SINE MIR 69 202 -6 1293 259 144 37 chr11 136185377 136185913 -14597640 + MLT1E LTR MaLR 1 593 0 360 0 0 0 chr11 136185925 136185965 -14597588 + (CA)n Simple_repeat Simple_repeat 2 41 0 1552 157 38 60 chr11 136186160 136186479 -14597074 - AluJo SINE Alu 0 312 1 21 0 0 0 chr11 136186801 136186822 -14596731 + AT_rich Low_complexity Low_complexity 1 21 0 957 273 83 0 chr11 136186859 136187123 -14596430 - MER110 LTR ERV1 -20 471 186 678 181 148 4 chr11 136187126 136187358 -14596195 - L1MB5 LINE L1 0 6180 5885 672 247 60 16 chr11 136187364 136187546 -14596007 - MER110 LTR ERV1 -299 192 3 1750 222 62 3 chr11 136187777 136188147 -14595406 + MSTD LTR MaLR 3 394 -2 6926 224 45 49 chr11 136188156 136188417 -14595136 + MSTD-int LTR MaLR 1 262 -1473 555 29 0 0 chr11 136188417 136188485 -14595068 - L1PA4 LINE L1 0 6155 6088 6926 224 45 49 chr11 136188485 136188806 -14594747 + MSTD-int LTR MaLR 262 583 -1152 1661 180 17 7 chr11 136188806 136189106 -14594447 + AluJb SINE Alu 1 303 -9 6926 224 45 49 chr11 136189106 136190264 -14593289 + MSTD-int LTR MaLR 583 1735 0 1603 195 87 0 chr11 136190264 136190627 -14592926 + MSTD LTR MaLR 1 396 0 1934 263 65 47 chr11 136190627 136191352 -14592201 - MER110-int LTR ERV1 -197 4450 3713 763 204 61 42 chr11 136192007 136192294 -14591259 + MLT1A1 LTR MaLR 1 365 0 26 0 0 0 chr11 136192393 136192419 -14591134 + AT_rich Low_complexity Low_complexity 1 26 0 29 60 0 0 chr11 136192502 136192552 -14591001 + AT_rich Low_complexity Low_complexity 1 50 0 202 56 56 0 chr11 136193729 136193765 -14589788 + CT-rich Low_complexity Low_complexity 1 38 0 3574 123 94 14 chr11 136193869 136194420 -14589133 + LTR49 LTR ERV1 1 595 0 347 278 58 50 chr11 136194883 136195053 -14588500 - MIR SINE MIR -67 141 1 1299 195 30 11 chr11 136195305 136195567 -14587986 + MER58B DNA MER1_type 71 337 -4 4017 25 0 2 chr11 136195567 136196012 -14587541 + L1PA4 LINE L1 5710 6153 -2 452 236 12 85 chr11 136196330 136196467 -14587086 - MIR SINE MIR -21 241 116 1862 171 3 7 chr11 136196467 136196771 -14586782 + AluJo SINE Alu 5 307 -5 452 236 12 85 chr11 136196771 136196798 -14586755 - MIR SINE MIR -146 116 89 281 247 173 70 chr11 136196931 136197174 -14586379 - MARNA DNA Mariner -164 422 155 1956 100 4 0 chr11 136197290 136197540 -14586013 - AluSx SINE Alu -28 284 34 223 258 136 0 chr11 136197660 136197726 -14585827 + MIR SINE MIR 74 148 -114 988 183 25 35 chr11 136197734 136197936 -14585617 + MER105 DNA DNA 5 204 0 184 271 35 57 chr11 136198334 136198469 -14585084 + L2 LINE L2 3081 3220 -52 276 53 0 0 chr11 136199554 136199592 -14583961 + (A)n Simple_repeat Simple_repeat 1 38 0 612 40 0 0 chr11 136199881 136199956 -14583597 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 201 171 0 0 chr11 136200468 136200503 -14583050 + A-rich Low_complexity Low_complexity 1 35 0 525 297 87 34 chr11 136201844 136202239 -14581314 - MIR SINE MIR -11 251 17 289 280 40 0 chr11 136202671 136202746 -14580807 - L2 LINE L2 0 3313 3236 * 375 348 14 73 chr11 136202745 136203101 -14580452 - L2 LINE L2 -871 2443 2109 930 114 0 8 chr11 136203486 136203618 -14579935 + AluSg/x SINE Alu 165 295 -17 1638 237 107 2 chr11 136203618 136204056 -14579497 + L1ME1 LINE L1 5679 6162 -4 185 330 9 28 chr11 136204656 136204762 -14578791 - L2 LINE L2 -226 3046 2943 461 300 100 52 chr11 136205214 136205444 -14578109 - MIR SINE MIR -21 241 1 389 263 9 9 chr11 136205750 136205890 -14577663 + L1ME3A LINE L1 5643 5771 -391 3594 167 20 0 chr11 136205892 136206585 -14576968 + L1MA4 LINE L1 3767 4473 -1673 2868 164 14 14 chr11 136206576 136207425 -14576128 + L1MA4 LINE L1 4922 5776 -524 * 1674 159 22 41 chr11 136207430 136207745 -14575808 + AluJo SINE Alu 1 309 -3 1068 88 11 28 chr11 136207780 136207852 -14575701 + (GAAA)n Simple_repeat Simple_repeat 1 248 0 1068 88 11 28 chr11 136207852 136208033 -14575520 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2745 132 34 30 chr11 136208057 136208334 -14575219 + L1MA4 LINE L1 5769 6050 -250 823 216 0 23 chr11 136208334 136208505 -14575048 + FAM SINE Alu 1 167 -8 2745 132 34 30 chr11 136208505 136208756 -14574797 + L1MA4 LINE L1 6050 6299 -1 390 254 46 8 chr11 136208770 136208900 -14574653 + L1ME3A LINE L1 5772 5906 -264 1570 294 75 34 chr11 136208961 136209579 -14573974 + L1MEc LINE L1 160 818 -5578 2166 178 55 13 chr11 136209579 136210050 -14573503 + L1MB2 LINE L1 5679 6169 -2 1570 294 75 34 chr11 136210050 136210199 -14573354 + L1MEc LINE L1 818 959 -5437 195 80 110 18 chr11 136210227 136210390 -14573163 + (TA)n Simple_repeat Simple_repeat 1 178 0 237 166 39 66 chr11 136210396 136210577 -14572976 + (TTATA)n Simple_repeat Simple_repeat 1 176 0 * 448 209 22 15 chr11 136210510 136210644 -14572909 + (TA)n Simple_repeat Simple_repeat 1 135 0 2675 248 54 53 chr11 136210647 136211927 -14571626 + L1MEc LINE L1 936 2216 -4180 14295 194 39 34 chr11 136211928 136218831 -14564722 + L1MA4A LINE L1 1 6985 -20 550 234 81 36 chr11 136218988 136219216 -14564337 + L1ME3 LINE L1 5863 6095 -67 188 320 185 40 chr11 136219523 136220041 -14563512 + L2 LINE L2 2266 2858 -456 25 0 0 0 chr11 136220440 136220465 -14563088 + AT_rich Low_complexity Low_complexity 1 25 0 439 307 73 13 chr11 136220633 136220783 -14562770 + MIR3 SINE MIR 37 195 -13 200 309 0 0 chr11 136220921 136220976 -14562577 - MIR SINE MIR -142 120 66 284 285 80 44 chr11 136221234 136221371 -14562182 - MIR SINE MIR -56 206 65 476 354 102 5 chr11 136221371 136221586 -14561967 + MIR SINE MIR 1 236 -26 230 172 141 16 chr11 136222792 136222856 -14560697 + MER63 DNA MER1_type 1 72 -858 1379 172 8 0 chr11 136223218 136223462 -14560091 - L1PA16 LINE L1 -9 6157 5912 411 277 24 12 chr11 136223467 136223633 -14559920 + MER63 DNA MER1_type 61 228 -702 926 198 64 134 chr11 136223904 136224104 -14559449 + MER63 DNA MER1_type 729 941 -120 1200 183 0 17 chr11 136224104 136224334 -14559219 + L1PA16 LINE L1 5939 6164 -2 926 198 64 134 chr11 136224334 136224377 -14559176 + MER63 DNA MER1_type 941 985 -76 2108 125 0 3 chr11 136224377 136224681 -14558872 - AluSq SINE Alu -10 303 1 926 198 64 134 chr11 136224681 136224794 -14558759 + MER63 DNA MER1_type 985 1061 0 245 230 14 27 chr11 136225607 136225681 -14557872 + (TATATG)n Simple_repeat Simple_repeat 5 77 0 360 246 261 0 chr11 136225903 136226041 -14557512 + MER5B DNA MER1_type 1 174 -4 499 172 8 62 chr11 136226656 136226784 -14556769 + MLT2C1 LTR ERVL 276 396 -1 1571 183 7 51 chr11 136226860 136227182 -14556371 + AluSx SINE Alu 1 309 0 7941 14 0 1 chr11 136227577 136229257 -14554296 + L1HS LINE L1 4477 6155 0 329 205 0 12 chr11 136229264 136229347 -14554206 + GA-rich Low_complexity Low_complexity 2 83 0 434 289 97 64 chr11 136229695 136230068 -14553485 + MLT1K LTR MaLR 204 588 0 300 163 0 0 chr11 136230226 136230275 -14553278 + LTR50 LTR ERVL 1 49 -746 16967 157 25 7 chr11 136230275 136234636 -14548917 + L1MA2 LINE L1 852 5381 -2342 2751 109 36 16 chr11 136234636 136235084 -14548469 + L1MA2 LINE L1 5840 6298 -6 16967 157 25 7 chr11 136235084 136237471 -14546082 + L1MA2 LINE L1 5381 7723 0 776 244 293 23 chr11 136237487 136238061 -14545492 + LTR50 LTR ERVL 38 766 -29 623 230 204 5 chr11 136238249 136238440 -14545113 - MIR SINE MIR -13 249 21 545 289 118 5 chr11 136239152 136239356 -14544197 - MIR SINE MIR 0 262 36 698 335 38 36 chr11 136239367 136239842 -14543711 + L1MEc LINE L1 38 513 -5883 963 283 83 29 chr11 136239954 136240246 -14543307 + L1MEc LINE L1 670 945 -5451 872 226 103 0 chr11 136240246 136240441 -14543112 - MER58C DNA MER1_type 0 215 1 963 283 83 29 chr11 136240441 136240774 -14542779 + L1MEc LINE L1 945 1329 -5067 346 240 70 35 chr11 136240792 136240963 -14542590 + L1MEc LINE L1 1408 1584 -4812 196 269 6 6 chr11 136241092 136241252 -14542301 + (TTA)n Simple_repeat Simple_repeat 2 161 0 250 218 25 39 chr11 136241552 136241671 -14541882 - MER5A DNA MER1_type 0 189 9 199 324 144 0 chr11 136243256 136243367 -14540186 - L2 LINE L2 0 3313 3187 1800 158 25 3 chr11 136243420 136243705 -14539848 + AluSx SINE Alu 1 291 -21 30 0 0 0 chr11 136243971 136244001 -14539552 + AT_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chr11 136244189 136244235 -14539318 + AT_rich Low_complexity Low_complexity 1 46 0 703 219 156 0 chr11 136244407 136244567 -14538986 + MER5A DNA MER1_type 4 188 -1 211 330 0 78 chr11 136244805 136244920 -14538633 + L3 LINE CR1 1471 1576 -1 407 208 0 0 chr11 136245558 136245630 -14537923 - L2 LINE L2 0 3272 3201 2313 92 13 0 chr11 136245963 136246267 -14537286 + AluSg SINE Alu 1 308 -2 2223 131 37 0 chr11 136246532 136246883 -14536670 - THE1B LTR MaLR 0 364 1 313 93 19 0 chr11 136246981 136247035 -14536518 - L1MB4 LINE L1 0 6180 6126 4448 63 0 5 chr11 136247035 136247605 -14535948 - L1PA8 LINE L1 -6 6166 5595 1419 205 3 56 chr11 136248329 136248631 -14534922 + AluJo SINE Alu 22 307 -5 23 33 0 0 chr11 136249295 136249325 -14534228 + AT_rich Low_complexity Low_complexity 1 30 0 348 333 157 40 chr11 136249375 136249624 -14533929 - L3 LINE CR1 -35 1542 1265 514 369 163 17 chr11 136249627 136250626 -14532927 - L2 LINE L2 -10 3262 2109 223 302 20 67 chr11 136250629 136250778 -14532775 - L3 LINE CR1 -313 1264 1123 245 158 0 0 chr11 136250943 136250981 -14532572 + MLT1I LTR MaLR 113 150 -259 * 506 276 112 44 chr11 136250972 136251222 -14532331 + MLT1J2 LTR MaLR 183 449 -1 315 0 0 0 chr11 136252079 136252114 -14531439 + (A)n Simple_repeat Simple_repeat 1 35 0 205 294 82 77 chr11 136252156 136252326 -14531227 + L2 LINE L2 2708 2878 -436 1001 187 11 0 chr11 136252422 136252453 -14531100 - FRAM SINE Alu -136 176 147 402 39 0 0 chr11 136252453 136252505 -14531048 + (TG)n Simple_repeat Simple_repeat 2 53 0 1001 187 11 0 chr11 136252505 136252655 -14530898 - FRAM SINE Alu -165 147 1 298 333 43 7 chr11 136252790 136252928 -14530625 - L2 LINE L2 0 3313 3171 1599 161 11 4 chr11 136253086 136253346 -14530207 + AluJo SINE Alu 23 284 -28 2186 126 3 0 chr11 136253856 136254157 -14529396 + AluSx SINE Alu 1 302 -10 203 182 45 0 chr11 136254826 136254870 -14528683 + L2 LINE L2 3268 3313 0 438 319 94 0 chr11 136255048 136255239 -14528314 + MIR SINE MIR 53 261 -1 4367 122 53 67 chr11 136255613 136256409 -14527144 - LTR1 LTR ERV1 0 785 1 400 171 0 111 chr11 136256616 136256733 -14526820 + L1MA5 LINE L1 5940 6043 -257 * 1872 19 0 0 chr11 136256731 136256946 -14526607 + L1PA2 LINE L1 5840 6054 -101 776 143 38 0 chr11 136257059 136257192 -14526361 + L1MA5 LINE L1 6037 6174 -126 318 119 0 17 chr11 136257192 136257243 -14526310 + L1MA6 LINE L1 6241 6298 -2 370 286 42 0 chr11 136257635 136257754 -14525799 + L2 LINE L2 2236 2359 -955 534 202 0 0 chr11 136257894 136257993 -14525560 - MLT1D LTR MaLR 0 626 528 1506 209 5 94 chr11 136258152 136258257 -14525296 - MLT1D LTR MaLR -109 396 283 2342 153 10 25 chr11 136258257 136258655 -14524898 - L1MA3 LINE L1 0 6305 5914 1506 209 5 94 chr11 136258655 136258984 -14524569 - MLT1D LTR MaLR -222 283 1 463 309 37 6 chr11 136258984 136259146 -14524407 - MIR SINE MIR -59 203 37 458 343 63 48 chr11 136259193 136259572 -14523981 + L2 LINE L2 2572 2956 -358 184 304 101 0 chr11 136259568 136259647 -14523906 + MIR SINE MIR 162 248 -14 * 542 343 206 20 chr11 136260550 136261293 -14522260 - L2 LINE L2 -451 2863 1983 216 267 50 122 chr11 136261360 136261581 -14521972 + L2 LINE L2 3044 3248 -65 244 179 30 45 chr11 136261602 136261669 -14521884 - LTR16C LTR ERVL -39 452 387 908 245 113 43 chr11 136261901 136262228 -14521325 - LTR16C LTR ERVL -90 401 52 211 290 48 0 chr11 136262282 136262344 -14521209 + L2 LINE L2 3204 3268 -4 196 348 34 11 chr11 136262632 136262721 -14520832 + L2 LINE L2 3182 3272 0 254 370 27 48 chr11 136262746 136263038 -14520515 - L2 LINE L2 -1965 1349 1064 2219 125 64 19 chr11 136263423 136263782 -14519771 - THE1C LTR MaLR 0 375 1 305 230 138 0 chr11 136263783 136263870 -14519683 + L2 LINE L2 3174 3272 0 388 286 34 28 chr11 136263879 136264057 -14519496 - MLT1K LTR MaLR -27 561 383 496 261 168 19 chr11 136264086 136264271 -14519282 - MLT1K LTR MaLR -323 265 85 276 370 42 0 chr11 136264277 136264396 -14519157 - L2 LINE L2 -557 2757 2634 2018 202 87 22 chr11 136264404 136264864 -14518689 + LTR2B LTR ERV1 1 490 0 243 295 32 42 chr11 136264923 136265098 -14518455 - L2 LINE L2 -61 3211 2989 2160 137 0 6 chr11 136265246 136265560 -14517993 + AluSx SINE Alu 1 312 0 1193 186 131 20 chr11 136265683 136265935 -14517618 + AluJo SINE Alu 1 280 -32 1943 145 17 10 chr11 136265995 136266292 -14517261 + AluJb SINE Alu 1 299 -13 1022 301 66 27 chr11 136266306 136266744 -14516809 - L2 LINE L2 -678 2636 2182 224 294 319 4 chr11 136266977 136267215 -14516338 - L2 LINE L2 -821 2493 2181 239 320 80 48 chr11 136268059 136268184 -14515369 + L2 LINE L2 3143 3271 -1 350 317 6 43 chr11 136268315 136268476 -14515077 + MIR SINE MIR 66 220 -42 2123 118 3 3 chr11 136268513 136268809 -14514744 + AluSx SINE Alu 1 296 -16 329 292 49 107 chr11 136268942 136269185 -14514368 - L2 LINE L2 -77 3195 2967 23 0 0 0 chr11 136269367 136269390 -14514163 + AT_rich Low_complexity Low_complexity 1 23 0 299 292 62 48 chr11 136270925 136271134 -14512419 + MIR SINE MIR 20 231 -31 195 288 137 84 chr11 136272442 136272668 -14510885 + L2 LINE L2 3030 3267 -5 6319 166 29 3 chr11 136272827 136274704 -14508849 - L1PA13 LINE L1 -4 6159 4252 1759 201 10 3 chr11 136274705 136275093 -14508460 + L1P LINE L1 2866 3256 -2890 583 252 14 0 chr11 136275142 136275285 -14508268 + MER69A DNA AcHobo 20 164 -13 1971 156 0 0 chr11 136275291 136275597 -14507956 + AluSx SINE Alu 1 306 0 543 278 79 35 chr11 136275615 136275957 -14507596 + L1M4 LINE L1 3654 4010 -2136 3199 107 0 5 chr11 136276030 136276469 -14507084 + L1PA13 LINE L1 5723 6159 -4 639 265 72 109 chr11 136276469 136276997 -14506556 - MLT1G LTR MaLR -43 552 2 1017 226 93 0 chr11 136277105 136277309 -14506244 - MER58A DNA MER1_type -1 223 1 2067 145 0 0 chr11 136277408 136277712 -14505841 + AluSx SINE Alu 1 304 -8 625 227 37 125 chr11 136277849 136278073 -14505480 + L1MC4a LINE L1 5640 5818 -1990 2177 115 6 13 chr11 136278073 136278386 -14505167 + AluSx SINE Alu 2 312 0 625 227 37 125 chr11 136278386 136278544 -14505009 + L1MC4a LINE L1 5818 5988 -1820 594 288 19 12 chr11 136278829 136278989 -14504564 + MIR SINE MIR 12 172 -90 352 239 239 0 chr11 136279350 136279463 -14504090 - MER5A DNA MER1_type -6 183 44 4978 229 43 40 chr11 136279936 136280876 -14502677 + L1 LINE L1 5 941 -5847 2703 137 49 2 chr11 136280876 136281285 -14502268 + MSTA LTR MaLR 1 428 0 9961 160 36 6 chr11 136281285 136282888 -14500665 + MSTA-int LTR MaLR 1 1650 -1 2683 140 36 7 chr11 136282891 136283305 -14500248 + MSTA LTR MaLR 3 428 0 4978 229 43 40 chr11 136283305 136284404 -14499149 + L1 LINE L1 942 2036 -4752 2200 96 41 0 chr11 136284404 136284695 -14498858 + AluY SINE Alu 1 303 -8 4978 229 43 40 chr11 136284695 136285992 -14497561 + L1 LINE L1 2036 3470 -3318 2900 178 38 14 chr11 136285970 136286609 -14496944 + L1 LINE L1 4998 5651 -1137 * 2471 120 5 16 chr11 136286641 136287008 -14496545 - L1PB1 LINE L1 -8 6859 6497 14779 195 30 9 chr11 136287066 136287258 -14496295 - L1PB1 LINE L1 -360 6507 6321 2286 116 0 3 chr11 136287258 136287568 -14495985 - AluSg SINE Alu -1 309 1 14779 195 30 9 chr11 136287568 136292540 -14491013 - L1PB1 LINE L1 -546 6321 1093 3236 60 2 104 chr11 136292555 136293054 -14490499 + LTR7 LTR ERV1 1 448 -2 29739 124 15 20 chr11 136293056 136301182 -14482371 + HERVH LTR ERV1 1 7713 0 3633 53 0 2 chr11 136301182 136301631 -14481922 + LTR7 LTR ERV1 1 448 -2 2149 202 24 7 chr11 136301635 136302061 -14481492 - L1PBa LINE L1 -5826 1037 605 1375 258 35 5 chr11 136302089 136302488 -14481065 - L1PBa LINE L1 -6314 549 139 275 219 78 0 chr11 136302495 136302559 -14480994 - AluJ/FRAM SINE Alu -2 300 232 375 206 0 0 chr11 136302594 136302669 -14480884 + AluJ/FLAM SINE Alu 1 58 -244 457 246 34 49 chr11 136302686 136302950 -14480603 + pTR5 LTR ERV1 769 1028 -1410 4034 80 156 107 chr11 136303030 136303817 -14479736 + LTR12 LTR ERV1 1 826 0 1939 99 0 8 chr11 136303820 136304073 -14479480 + AluSx SINE Alu 58 308 -4 947 209 55 41 chr11 136304073 136304365 -14479188 + L1MA6 LINE L1 5035 5330 -816 1423 196 41 0 chr11 136304372 136304638 -14478915 + AluJb SINE Alu 14 290 -22 3677 138 64 48 chr11 136304640 136304948 -14478605 + L1MA6 LINE L1 5320 5622 -678 2369 109 0 6 chr11 136304948 136305260 -14478293 - AluSg SINE Alu 0 310 1 3677 138 64 48 chr11 136305260 136305401 -14478152 + L1MA6 LINE L1 5622 5759 -541 2296 109 3 0 chr11 136305401 136305703 -14477850 + AluSp SINE Alu 1 303 -10 3677 138 64 48 chr11 136305703 136305957 -14477596 + L1MA6 LINE L1 5759 6035 -265 637 41 0 0 chr11 136305957 136306030 -14477523 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 582 144 0 39 chr11 136306048 136306152 -14477401 + AluSp/q SINE Alu 206 305 -8 616 148 0 0 chr11 136306157 136306258 -14477295 + AluSp/q SINE Alu 208 308 -5 450 142 134 7 chr11 136306258 136306403 -14477150 + L1MA6 LINE L1 6012 6157 -155 1335 111 30 21 chr11 136306410 136306644 -14476909 + L1MA6 LINE L1 6065 6300 0 34 24 0 0 chr11 136306644 136306685 -14476868 + AT_rich Low_complexity Low_complexity 1 41 0 871 136 163 38 chr11 136306762 136306946 -14476607 - L1PA16 LINE L1 -20 6146 5940 557 184 203 57 chr11 136307028 136307093 -14476460 - MER5A DNA MER1_type -3 186 132 2074 115 35 0 chr11 136307093 136307379 -14476174 + AluSx SINE Alu 1 296 -16 557 184 203 57 chr11 136307379 136307471 -14476082 - MER5A DNA MER1_type -57 132 6 379 352 5 33 chr11 136307764 136307984 -14475569 - MIR SINE MIR -46 216 5 2300 107 3 3 chr11 136308103 136308413 -14475140 - AluSp SINE Alu -3 310 1 949 102 14 14 chr11 136309115 136309262 -14474291 + L1PB2 LINE L1 6005 6151 0 209 313 61 40 chr11 136309276 136309375 -14474178 + L3 LINE CR1 294 394 -1183 487 167 10 0 chr11 136309503 136309605 -14473948 + L1 LINE L1 2984 3086 -3060 295 149 21 0 chr11 136309605 136309652 -14473901 + Alu SINE Alu 1 48 -255 2687 160 74 4 chr11 136309652 136310127 -14473426 + L1MA4 LINE L1 58 565 -6224 2145 141 0 0 chr11 136310164 136310469 -14473084 + AluSx SINE Alu 1 305 -7 1706 200 27 7 chr11 136310475 136311144 -14472409 + L1MA4 LINE L1 3726 6579 -214 336 144 41 72 chr11 136311148 136311245 -14472308 + L1MB3 LINE L1 6087 6180 -3 31 0 0 0 chr11 136311245 136311276 -14472277 + AT_rich Low_complexity Low_complexity 1 31 0 5739 146 9 54 chr11 136311311 136311565 -14471988 + L1MA5A LINE L1 5109 5373 -924 802 98 0 0 chr11 136311565 136311677 -14471876 - L1PB1 LINE L1 -1 6150 6039 5739 146 9 54 chr11 136311677 136312655 -14470898 + L1MA5A LINE L1 5373 6287 -10 3139 160 12 54 chr11 136312717 136313037 -14470516 + L1PB4 LINE L1 5514 5846 -310 2402 72 0 23 chr11 136313037 136313344 -14470209 + AluY SINE Alu 3 302 -9 3139 160 12 54 chr11 136313344 136313475 -14470078 + L1PB4 LINE L1 5846 5981 -175 1934 160 3 3 chr11 136313475 136313781 -14469772 + AluJb SINE Alu 1 306 -6 3139 160 12 54 chr11 136313781 136313996 -14469557 + L1PB4 LINE L1 5981 6153 -3 1463 143 0 0 chr11 136314105 136314314 -14469239 + AluSq SINE Alu 1 209 -104 1787 116 0 41 chr11 136314314 136314581 -14468972 + AluSx SINE Alu 49 304 -8 2410 112 0 0 chr11 136315319 136315631 -14467922 + AluSx SINE Alu 1 312 0 2230 113 3 3 chr11 136315987 136316289 -14467264 + AluSx SINE Alu 1 302 -10 286 158 0 26 chr11 136316970 136317046 -14466507 + (TA)n Simple_repeat Simple_repeat 1 74 0 207 139 0 0 chr11 136317427 136317463 -14466090 + (CA)n Simple_repeat Simple_repeat 2 37 0 414 0 0 0 chr11 136317533 136317579 -14465974 + (CA)n Simple_repeat Simple_repeat 2 47 0 35 54 0 0 chr11 136318011 136318067 -14465486 + AT_rich Low_complexity Low_complexity 1 56 0 588 230 0 0 chr11 136318067 136318180 -14465373 - AluJb SINE Alu -195 117 5 432 243 99 45 chr11 136318253 136318455 -14465098 - HsTC2 DNA Tc2 -150 1748 1536 6545 139 12 2 chr11 136318481 136319465 -14464088 - Ricksha DNA DNA -811 1235 242 622 197 17 0 chr11 136319469 136319586 -14463967 - Ricksha DNA DNA -1927 119 1 2404 79 7 3 chr11 136320006 136320310 -14463243 - AluSp SINE Alu -8 305 1 407 113 0 16 chr11 136320418 136320480 -14463073 - MLT2B3 LTR ERVL -40 514 454 1080 209 80 44 chr11 136320722 136320888 -14462665 + MER58B DNA MER1_type 1 180 -161 2336 83 0 13 chr11 136320888 136321023 -14462530 + AluY SINE Alu 1 136 -175 2478 71 0 0 chr11 136321023 136321319 -14462234 + AluY SINE Alu 1 296 -15 2336 83 0 13 chr11 136321319 136321484 -14462069 + AluY SINE Alu 136 297 -14 1080 209 80 44 chr11 136321484 136321566 -14461987 + MER58B DNA MER1_type 180 258 -83 307 254 28 0 chr11 136321683 136321754 -14461799 + MER58B DNA MER1_type 268 340 -1 926 136 8 0 chr11 136321997 136322129 -14461424 - FLAM_C SINE Alu 0 133 1 1004 187 0 0 chr11 136322312 136322467 -14461086 + FRAM SINE Alu 1 155 -21 2872 172 83 59 chr11 136322521 136322922 -14460631 - LTR8A LTR ERV1 0 727 300 2075 140 3 0 chr11 136322922 136323215 -14460338 + AluSx SINE Alu 1 294 -18 2872 172 83 59 chr11 136323215 136323523 -14460030 - LTR8A LTR ERV1 -427 300 1 193 266 11 75 chr11 136323767 136323823 -14459730 - MIR SINE MIR -60 202 153 2560 50 0 3 chr11 136323823 136324123 -14459430 - AluY SINE Alu -12 299 1 193 266 11 75 chr11 136324123 136324160 -14459393 - MIR SINE MIR -109 153 115 1179 274 47 87 chr11 136324183 136324837 -14458716 - MER21B LTR ERV1 -186 677 50 252 269 86 0 chr11 136324878 136324971 -14458582 - MIR SINE MIR -136 126 26 2461 56 12 37 chr11 136324974 136325295 -14458258 - AluSq SINE Alu 0 313 1 784 99 0 0 chr11 136325319 136325420 -14458133 - U6 snRNA snRNA 0 107 7 1922 174 146 35 chr11 136326110 136326603 -14456950 + LTR10A LTR ERV1 1 548 -61 25 65 0 0 chr11 136326996 136327042 -14456511 + AT_rich Low_complexity Low_complexity 1 46 0 396 0 0 0 chr11 136327159 136327203 -14456350 + (CA)n Simple_repeat Simple_repeat 1 44 0 263 73 0 49 chr11 136327906 136327947 -14455606 + THE1C LTR MaLR 1 39 -325 7169 71 1 21 chr11 136327995 136329820 -14453733 - L1PA8 LINE L1 0 6172 4369 1989 122 46 32 chr11 136329821 136330166 -14453387 + THE1C LTR MaLR 26 375 0 2336 100 0 7 chr11 136330582 136330883 -14452670 + AluSq SINE Alu 3 301 -12 1140 191 39 224 chr11 136331468 136331726 -14451827 - L1ME1 LINE L1 -325 6235 5931 641 202 23 0 chr11 136331726 136331855 -14451698 + AluJo SINE Alu 5 136 -176 1140 191 39 224 chr11 136331855 136332032 -14451521 - L1ME1 LINE L1 -629 5931 5864 2346 100 0 0 chr11 136332032 136332332 -14451221 - AluSx SINE Alu -4 308 9 1140 191 39 224 chr11 136332332 136332587 -14450966 - L1ME1 LINE L1 -696 5864 5564 1017 157 6 6 chr11 136332606 136332772 -14450781 + AluJo SINE Alu 137 302 0 3536 197 55 81 chr11 136332787 136332994 -14450559 - L1ME1 LINE L1 -4287 2253 2042 2133 124 3 13 chr11 136332994 136333309 -14450244 - AluSx SINE Alu 0 312 1 3536 197 55 81 chr11 136333309 136333686 -14449867 - L1ME1 LINE L1 -4498 2042 1657 2392 105 0 3 chr11 136333686 136333999 -14449554 - AluSx SINE Alu 0 312 1 3536 197 55 81 chr11 136333999 136334839 -14448714 - L1ME1 LINE L1 -4883 1657 903 2302 104 16 3 chr11 136335058 136335432 -14448121 + AluSx SINE Alu 1 378 0 272 291 29 29 chr11 136335905 136336008 -14447545 - L1ME1 LINE L1 -6411 129 27 2167 109 27 0 chr11 136336297 136336591 -14446962 + AluSc SINE Alu 1 302 -7 2215 120 3 0 chr11 136336591 136336892 -14446661 + AluSp SINE Alu 1 302 -11 261 0 0 0 chr11 136336997 136337026 -14446527 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2263 72 38 3 chr11 136337158 136337449 -14446104 + AluSq SINE Alu 1 301 -12 267 211 26 0 chr11 136337783 136337859 -14445694 + L1M4 LINE L1 2883 2960 -3186 377 309 93 50 chr11 136337884 136338302 -14445251 + L1M4 LINE L1 3132 3567 -2579 2331 113 3 0 chr11 136338344 136338654 -14444899 + AluSx SINE Alu 1 311 -1 378 193 5 168 chr11 136338654 136338856 -14444697 + HAL1 LINE L1 2339 2507 0 184 402 27 5 chr11 136340157 136340341 -14443212 - MIR SINE MIR -70 192 5 1625 198 45 28 chr11 136340590 136340746 -14442807 + MLT1A1 LTR MaLR 1 153 -212 2417 82 3 3 chr11 136340746 136341049 -14442504 + AluSp SINE Alu 1 303 -10 1625 198 45 28 chr11 136341049 136341251 -14442302 + MLT1A1 LTR MaLR 153 365 0 1821 154 11 3 chr11 136341924 136342209 -14441344 + AluSx SINE Alu 1 287 -25 1803 155 53 26 chr11 136342573 136342876 -14440677 + AluJb SINE Alu 1 311 -1 360 155 0 0 chr11 136342876 136342947 -14440606 + GA-rich Low_complexity Low_complexity 2 72 0 238 345 123 12 chr11 136343350 136343521 -14440032 + MIR3 SINE MIR 17 206 -2 2161 92 39 0 chr11 136344002 136344285 -14439268 - AluSx SINE Alu -18 294 1 248 266 11 64 chr11 136344315 136344409 -14439144 - MIR SINE MIR -79 183 95 2032 114 0 11 chr11 136344627 136344907 -14438646 + AluSx SINE Alu 9 285 -27 25 0 0 0 chr11 136344907 136344932 -14438621 + AT_rich Low_complexity Low_complexity 1 25 0 269 207 193 93 chr11 136345219 136345265 -14438288 + MER5A DNA MER1_type 30 70 -119 1883 142 0 21 chr11 136345265 136345580 -14437973 + AluJo SINE Alu 1 309 0 269 207 193 93 chr11 136345580 136345672 -14437881 + MER5A DNA MER1_type 70 183 -6 2150 121 10 0 chr11 136345843 136346149 -14437404 + AluSq SINE Alu 1 309 -4 497 317 40 5 chr11 136346907 136347106 -14436447 - MIR SINE MIR -1 261 56 900 195 71 19 chr11 136347273 136347483 -14436070 + MER58A DNA MER1_type 3 223 -1 247 341 216 19 chr11 136347638 136347846 -14435707 + L3 LINE CR1 1328 1576 -1 1054 121 0 0 chr11 136347919 136348068 -14435485 + AluSg/x SINE Alu 164 312 0 24 0 0 0 chr11 136348131 136348155 -14435398 + AT_rich Low_complexity Low_complexity 1 24 0 1017 256 90 44 chr11 136348278 136348689 -14434864 + LTR8A LTR ERV1 292 721 -6 276 158 0 0 chr11 136348693 136348731 -14434822 - Alu SINE Alu -264 38 1 3827 148 39 20 chr11 136348881 136349028 -14434525 + L1MA7 LINE L1 5541 5684 -607 1716 169 0 28 chr11 136349028 136349327 -14434226 + AluJo SINE Alu 2 293 -19 252 0 0 0 chr11 136349327 136349355 -14434198 + (CA)n Simple_repeat Simple_repeat 1 28 0 1716 169 0 28 chr11 136349355 136349374 -14434179 + AluJo SINE Alu 293 311 -1 3827 148 39 20 chr11 136349374 136349936 -14433617 + L1MA7 LINE L1 5684 6264 -27 2192 131 0 3 chr11 136349941 136350246 -14433307 + AluSx SINE Alu 2 305 -7 24 32 0 0 chr11 136350272 136350303 -14433250 + AT_rich Low_complexity Low_complexity 1 31 0 460 318 54 46 chr11 136350363 136350712 -14432841 + L1MC/D LINE L1 3589 3940 -2206 2078 135 10 0 chr11 136350712 136351009 -14432544 + AluSx SINE Alu 1 300 -12 244 266 168 9 chr11 136351190 136351303 -14432250 + L1P LINE L1 4099 4229 -1917 2366 91 0 0 chr11 136351397 136351682 -14431871 + AluSq SINE Alu 1 285 -28 1662 236 47 16 chr11 136351791 136352215 -14431338 - LTR40b LTR ERVL -25 437 1 2159 127 0 29 chr11 136352246 136352562 -14430991 + AluSx SINE Alu 1 307 -5 3758 179 39 33 chr11 136352703 136353421 -14430132 + L1MC2 LINE L1 5511 6236 -108 1866 184 3 3 chr11 136353421 136353731 -14429822 + AluJb SINE Alu 1 310 -2 3758 179 39 33 chr11 136353731 136353833 -14429720 + L1MC2 LINE L1 6236 6336 -8 755 326 134 37 chr11 136353840 136353905 -14429648 + L1MC/D LINE L1 4545 4602 -1544 2034 98 4 11 chr11 136353905 136354181 -14429372 + AluSx SINE Alu 1 274 -38 755 326 134 37 chr11 136354181 136354813 -14428740 + L1MC/D LINE L1 4602 5299 -847 459 289 66 15 chr11 136354943 136355140 -14428413 + L1MC/D LINE L1 5406 5612 -2196 181 156 0 0 chr11 136355140 136355172 -14428381 + MIR SINE MIR 129 160 -102 2054 136 0 14 chr11 136356590 136356884 -14426669 - AluSx SINE Alu -22 290 1 349 257 114 19 chr11 136356884 136356989 -14426564 + L1MC/D LINE L1 5622 5736 -2072 1747 184 4 0 chr11 136357039 136357317 -14426236 + AluSx SINE Alu 1 279 -33 627 159 14 14 chr11 136357319 136357457 -14426096 + GA-rich Low_complexity Low_complexity 2 139 0 186 309 12 25 chr11 136357756 136357837 -14425716 - L2 LINE L2 -189 3083 3004 180 276 210 50 chr11 136358163 136358344 -14425209 - L2 LINE L2 -1 3312 3103 874 169 0 0 chr11 136359202 136359332 -14424221 - FLAM_C SINE Alu -3 130 1 4543 180 10 24 chr11 136361372 136361942 -14421611 + L1MB7 LINE L1 5254 5830 -354 1571 124 4 4 chr11 136361942 136362175 -14421378 - MER46A DNA MER2_type 0 236 4 4543 180 10 24 chr11 136362175 136362497 -14421056 + L1MB7 LINE L1 5830 6135 -49 1662 193 17 0 chr11 136362497 136362797 -14420756 + AluJb SINE Alu 1 305 -7 4543 180 10 24 chr11 136362797 136362835 -14420718 + L1MB7 LINE L1 6135 6172 -12 2401 100 0 3 chr11 136362910 136363220 -14420333 - AluSq SINE Alu -4 309 1 2385 89 10 0 chr11 136364120 136364424 -14419129 + AluSq SINE Alu 1 307 -6 1964 144 23 13 chr11 136364437 136364771 -14418782 + AluSx SINE Alu 5 341 0 314 304 65 0 chr11 136364800 136364938 -14418615 - LTR16B LTR ERVL -157 307 161 2249 99 0 31 chr11 136365338 136365661 -14417892 - AluSq SINE Alu 0 313 1 2324 119 3 0 chr11 136366173 136366485 -14417068 - AluSp SINE Alu 0 313 1 229 431 0 0 chr11 136366865 136366967 -14416586 - MER5A DNA MER1_type -37 152 51 1491 114 0 0 chr11 136367073 136367275 -14416278 - AluSq SINE Alu -111 202 1 1734 186 10 7 chr11 136367317 136367623 -14415930 + AluJo SINE Alu 1 307 -5 186 43 0 0 chr11 136367891 136367914 -14415639 + (CACCAT)n Simple_repeat Simple_repeat 4 26 0 447 297 130 5 chr11 136367949 136368134 -14415419 + MIR SINE MIR 2 209 -53 2171 121 0 0 chr11 136368205 136368517 -14415036 - AluSx SINE Alu 0 312 1 296 335 118 33 chr11 136369351 136369478 -14414075 - L3 LINE CR1 -60 1517 1402 966 101 0 36 chr11 136369478 136369616 -14413937 - FLAM_C SINE Alu 0 133 1 296 335 118 33 chr11 136369616 136369733 -14413820 - L3 LINE CR1 -175 1402 1252 996 207 0 0 chr11 136369763 136369937 -14413616 + FAM SINE Alu 2 175 0 2264 107 7 0 chr11 136370005 136370303 -14413250 - AluSp SINE Alu -13 300 1 479 309 50 33 chr11 136370320 136370727 -14412826 - MLT2E LTR ERVL -248 415 1 378 0 0 0 chr11 136371149 136371191 -14412362 + (TG)n Simple_repeat Simple_repeat 2 43 0 216 128 0 51 chr11 136371393 136371412 -14412141 + (GAAA)n Simple_repeat Simple_repeat 3 21 -18 2312 116 0 0 chr11 136371412 136371723 -14411830 + AluSx SINE Alu 1 311 -1 216 128 0 51 chr11 136371723 136371742 -14411811 + (GAAA)n Simple_repeat Simple_repeat 21 39 0 2023 130 13 13 chr11 136372732 136373039 -14410514 - AluSx SINE Alu -5 307 1 2223 67 3 97 chr11 136373531 136373872 -14409681 - AluSc SINE Alu 0 309 1 2144 120 0 0 chr11 136373981 136374287 -14409266 + AluSx SINE Alu 1 306 0 2316 105 3 0 chr11 136375140 136375436 -14408117 - AluSx SINE Alu -15 297 1 1012 133 124 19 chr11 136375510 136375720 -14407833 - L1MC1 LINE L1 0 6333 6102 2215 101 7 7 chr11 136375721 136376017 -14407536 - AluSx SINE Alu -13 299 4 432 0 0 0 chr11 136376025 136376073 -14407480 + (TG)n Simple_repeat Simple_repeat 1 48 0 2056 108 4 0 chr11 136376073 136376352 -14407201 - AluSp SINE Alu -33 280 1 806 197 0 0 chr11 136376372 136376499 -14407054 - FLAM_C SINE Alu -16 127 1 695 144 0 79 chr11 136376528 136376667 -14406886 + FLAM_C SINE Alu 3 130 -3 1481 171 85 20 chr11 136376690 136376983 -14406570 + AluJo SINE Alu 1 312 0 2333 122 0 0 chr11 136377018 136377330 -14406223 + AluSx SINE Alu 1 312 0 275 293 0 49 chr11 136377447 136377529 -14406024 - MIR3 SINE MIR -27 181 104 2189 111 0 19 chr11 136377695 136378010 -14405543 - AluSg1 SINE Alu 0 309 1 1667 163 11 32 chr11 136378010 136378293 -14405260 - AluJb SINE Alu -15 297 21 2283 108 0 0 chr11 136378693 136378988 -14404565 - AluSc SINE Alu -14 295 1 764 247 98 0 chr11 136379469 136379663 -14403890 + MIR SINE MIR 50 262 0 220 242 100 50 chr11 136380243 136380363 -14403190 - MIR3 SINE MIR -70 138 13 * 658 238 79 20 chr11 136380297 136380499 -14403054 + MIR SINE MIR 49 262 0 247 322 154 13 chr11 136380737 136380886 -14402667 - L3 LINE CR1 -98 1479 1310 253 365 0 0 chr11 136380886 136380960 -14402593 + C-rich Low_complexity Low_complexity 2 75 0 1989 119 29 0 chr11 136383109 136383386 -14400167 - AluSx SINE Alu -7 305 21 2109 125 0 0 chr11 136383734 136384013 -14399540 + AluSx SINE Alu 24 302 -10 897 246 69 9 chr11 136384290 136384522 -14399031 - MIR SINE MIR -2 260 15 333 228 0 13 chr11 136384540 136384619 -14398934 + MIR SINE MIR 180 257 -5 1823 198 104 50 chr11 136384620 136385099 -14398454 - MLT1D LTR MaLR 0 505 1 23 0 0 0 chr11 136386562 136386585 -14396968 + AT_rich Low_complexity Low_complexity 1 23 0 300 243 61 111 chr11 136387456 136387656 -14395897 - MIR SINE MIR -41 221 33 201 39 0 0 chr11 136387677 136387703 -14395850 + (A)n Simple_repeat Simple_repeat 1 26 0 2278 120 3 3 chr11 136387716 136388024 -14395529 - AluSq SINE Alu -5 308 1 794 227 112 55 chr11 136388050 136388234 -14395319 - L1ME1 LINE L1 -5 6161 5989 2457 76 10 13 chr11 136388234 136388548 -14395005 - AluSp SINE Alu 0 313 1 794 227 112 55 chr11 136388548 136388727 -14394826 - L1ME1 LINE L1 -177 5989 5779 2253 115 3 3 chr11 136388790 136389094 -14394459 - AluSx SINE Alu -8 304 1 644 291 30 20 chr11 136389587 136389790 -14393763 + MIR SINE MIR 46 250 -12 485 130 0 0 chr11 136390737 136390806 -14392747 - AluS SINE Alu -22 290 222 2048 58 61 22 chr11 136391032 136391310 -14392243 - AluY SINE Alu -22 289 1 1602 159 0 55 chr11 136391317 136391607 -14391946 - AluJo SINE Alu -38 274 1 2511 74 0 6 chr11 136392518 136392830 -14390723 - AluSg SINE Alu 0 310 1 255 200 17 17 chr11 136392949 136393009 -14390544 + CT-rich Low_complexity Low_complexity 2 61 0 2362 106 3 10 chr11 136393148 136393459 -14390094 - AluSx SINE Alu -3 309 1 445 282 47 53 chr11 136393884 136394054 -14389499 - MIR3 SINE MIR -25 183 15 2234 115 3 7 chr11 136394096 136394401 -14389152 - AluSq SINE Alu -9 304 1 218 356 33 11 chr11 136394715 136394805 -14388748 + MIR SINE MIR 16 107 -101 1844 182 115 22 chr11 136395212 136395674 -14387879 - MLT1D LTR MaLR 0 505 1 1056 212 20 25 chr11 136395778 136396023 -14387530 - MIR SINE MIR -4 258 15 294 115 0 0 chr11 136396262 136396314 -14387239 + (TG)n Simple_repeat Simple_repeat 2 53 0 443 305 53 7 chr11 136396576 136396727 -14386826 + MIR SINE MIR 97 254 -8 236 30 30 0 chr11 136396865 136396898 -14386655 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2025 112 0 0 chr11 136396907 136397176 -14386377 - AluSx SINE Alu -43 269 1 1070 149 6 12 chr11 136397357 136397518 -14386035 + AluJo SINE Alu 1 160 -152 379 326 116 44 chr11 136398205 136398386 -14385167 - L2 LINE L2 -9 3263 3070 230 271 79 64 chr11 136398379 136398441 -14385112 + L3 LINE CR1 1241 1301 -276 * 2152 114 7 20 chr11 136398441 136398739 -14384814 - AluSx SINE Alu -18 294 1 230 271 79 64 chr11 136398739 136398816 -14384737 + L3 LINE CR1 1301 1382 -195 2419 43 0 43 chr11 136399480 136399780 -14383773 + AluY SINE Alu 1 287 -24 192 241 103 0 chr11 136400181 136400239 -14383314 - L2 LINE L2 -97 3216 3153 2411 77 0 3 chr11 136400494 136400794 -14382759 - AluY SINE Alu -12 299 1 345 209 149 68 chr11 136400808 136400838 -14382715 - MIR SINE MIR -75 187 161 2345 109 0 0 chr11 136400838 136401142 -14382411 - AluSx SINE Alu -8 304 1 345 209 149 68 chr11 136401142 136401259 -14382294 - MIR SINE MIR -101 161 28 230 322 100 0 chr11 136401650 136401740 -14381813 + MIR SINE MIR 44 142 -66 260 287 165 24 chr11 136402009 136402173 -14381380 - MIR SINE MIR -44 218 32 1797 147 10 20 chr11 136402233 136402371 -14381182 + AluJb SINE Alu 1 139 -173 2178 121 3 7 chr11 136402371 136402677 -14380876 + AluSq SINE Alu 1 305 -8 1797 147 10 20 chr11 136402677 136402831 -14380722 + AluJb SINE Alu 139 290 -22 1878 171 49 0 chr11 136403121 136403449 -14380104 - MER2 DNA MER2_type 0 344 1 328 260 106 19 chr11 136403645 136403749 -14379804 + L2 LINE L2 3134 3246 -26 427 134 0 0 chr11 136403809 136403876 -14379677 + AluSp/q SINE Alu 228 294 -19 1685 137 0 65 chr11 136403899 136404192 -14379361 - AluSx SINE Alu -26 286 13 776 192 13 13 chr11 136404192 136404343 -14379210 - MLT1A2 LTR MaLR -223 151 1 338 333 0 20 chr11 136404910 136405009 -14378544 + MIR3 SINE MIR 10 106 -102 239 258 11 79 chr11 136405001 136405090 -14378463 - L2 LINE L2 0 3313 3231 * 498 293 160 0 chr11 136405541 136405691 -14377862 + MER5A DNA MER1_type 9 182 -7 1772 193 27 0 chr11 136405706 136405931 -14377622 - MER58B DNA MER1_type -2079 341 103 2317 96 0 6 chr11 136405931 136406244 -14377309 - AluSx SINE Alu -1 311 1 1772 193 27 0 chr11 136406244 136406350 -14377203 - MER58B DNA MER1_type -2317 103 1 436 262 49 8 chr11 136406457 136406579 -14376974 - MIR SINE MIR -62 146 20 2309 75 3 0 chr11 136406579 136406873 -14376680 - AluSp SINE Alu -15 298 4 219 69 0 0 chr11 136407799 136407828 -14375725 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 57 0 0 chr11 136408309 136408344 -14375209 + AT_rich Low_complexity Low_complexity 1 35 0 260 286 124 50 chr11 136408436 136408597 -14374956 - MIR SINE MIR -70 192 20 338 246 174 36 chr11 136408940 136409078 -14374475 - L1MC5 LINE L1 -48 7913 7757 1249 179 45 35 chr11 136409082 136409372 -14374181 + AluJb SINE Alu 6 298 -14 1677 169 13 7 chr11 136409509 136409817 -14373736 - AluSx SINE Alu -2 310 1 540 290 28 41 chr11 136409919 136410236 -14373317 - L1MC4 LINE L1 -41 8001 7689 657 237 30 0 chr11 136410269 136410404 -14373149 - L1MC4a LINE L1 -996 6812 6674 851 116 8 0 chr11 136410425 136410546 -14373007 - AluJb SINE Alu -187 125 4 1663 132 55 28 chr11 136410559 136410848 -14372705 - AluJb SINE Alu -15 297 1 2115 125 0 3 chr11 136410869 136411181 -14372372 - AluSx SINE Alu -1 311 1 375 41 0 0 chr11 136411191 136411240 -14372313 + (TG)n Simple_repeat Simple_repeat 2 50 0 189 0 0 0 chr11 136411239 136411260 -14372293 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 2097 122 0 0 chr11 136411260 136411556 -14371997 - AluSx SINE Alu -16 296 1 2333 49 0 3 chr11 136411833 136412142 -14371411 + AluY SINE Alu 1 308 0 214 296 12 25 chr11 136413355 136413436 -14370117 - L3 LINE CR1 -133 1444 1365 325 275 18 28 chr11 136413437 136413546 -14370007 + CT-rich Low_complexity Low_complexity 2 109 0 1135 241 66 85 chr11 136413872 136413954 -14369599 + MLT1D LTR MaLR 1 83 -422 1911 147 0 10 chr11 136413954 136414261 -14369292 + AluSq SINE Alu 1 304 -9 1135 241 66 85 chr11 136414261 136414431 -14369122 + MLT1D LTR MaLR 83 255 -250 2159 97 0 0 chr11 136414431 136414720 -14368833 + AluSg SINE Alu 1 289 -21 1135 241 66 85 chr11 136414720 136414981 -14368572 + MLT1D LTR MaLR 255 505 0 1940 111 0 17 chr11 136415152 136415459 -14368094 - AluSg SINE Alu 0 310 14 2014 123 3 25 chr11 136415467 136415783 -14367770 - AluSx SINE Alu 0 312 4 432 0 0 0 chr11 136415791 136415839 -14367714 + (TG)n Simple_repeat Simple_repeat 1 48 0 1847 118 4 0 chr11 136415839 136416118 -14367435 - AluSp SINE Alu -33 280 1 780 198 0 0 chr11 136416138 136416264 -14367289 - FLAM_C SINE Alu -16 127 2 631 138 14 87 chr11 136416294 136416432 -14367121 + FLAM_C SINE Alu 3 130 -3 1317 169 85 30 chr11 136416455 136416750 -14366803 + AluJo SINE Alu 1 311 -1 2169 113 0 0 chr11 136416796 136417097 -14366456 + AluSx SINE Alu 12 312 0 272 293 0 49 chr11 136417214 136417296 -14366257 - MIR3 SINE MIR -27 181 104 2033 112 0 19 chr11 136417462 136417776 -14365777 - AluSg1 SINE Alu -1 308 1 1525 163 11 32 chr11 136417776 136418059 -14365494 - AluJb SINE Alu -15 297 21 2135 108 0 0 chr11 136418459 136418754 -14364799 - AluSc SINE Alu -14 295 1 767 247 98 0 chr11 136419235 136419429 -14364124 + MIR SINE MIR 50 262 0 215 242 100 50 chr11 136420009 136420129 -14363424 - MIR3 SINE MIR -70 138 13 * 661 238 79 20 chr11 136420063 136420265 -14363288 + MIR SINE MIR 49 262 0 248 322 154 13 chr11 136420503 136420652 -14362901 - L3 LINE CR1 -98 1479 1310 253 365 0 0 chr11 136420652 136420726 -14362827 + C-rich Low_complexity Low_complexity 2 75 0 2244 79 7 3 chr11 136422030 136422333 -14361220 - AluSp SINE Alu -9 304 1 2467 62 7 0 chr11 136422343 136422652 -14360901 - AluY SINE Alu 0 311 1 1980 106 35 3 chr11 136422973 136423255 -14360298 - AluSx SINE Alu -21 291 1 456 208 139 0 chr11 136423761 136423862 -14359691 + FLAM_C SINE Alu 3 117 -16 945 183 5 16 chr11 136423955 136424141 -14359412 + AluSq SINE Alu 1 184 -129 2220 88 7 0 chr11 136424278 136424583 -14358970 - AluSp SINE Alu -6 307 1 4087 164 7 53 chr11 136424729 136425497 -14358056 - MER44D DNA MER2_type 0 605 2 1323 276 92 55 chr11 136425572 136426170 -14357383 + MER115 DNA AcHobo 55 674 -19 1925 142 3 3 chr11 136427572 136427874 -14355679 - AluSx SINE Alu -10 302 1 216 97 0 0 chr11 136428488 136428519 -14355034 + (A)n Simple_repeat Simple_repeat 1 31 0 342 324 185 23 chr11 136429170 136429872 -14353681 - L2 LINE L2 0 3272 2444 722 174 0 0 chr11 136430457 136430572 -14352981 + FLAM_A SINE Alu 1 115 -18 275 67 44 0 chr11 136430573 136430618 -14352935 + (AAATG)n Simple_repeat Simple_repeat 4 50 0 665 358 109 20 chr11 136430621 136431169 -14352384 - L2 LINE L2 -219 3053 2439 435 295 102 56 chr11 136431328 136431810 -14351743 - L2 LINE L2 -872 2442 1939 204 188 167 0 chr11 136431845 136431893 -14351660 + MIR SINE MIR 67 122 -140 2213 92 7 0 chr11 136432297 136432592 -14350961 + AluSp SINE Alu 3 299 -14 1184 158 10 0 chr11 136432675 136432899 -14350654 - AluJo SINE Alu 0 311 86 395 320 78 0 chr11 136433043 136433196 -14350357 + MIR SINE MIR 71 235 -27 190 195 98 0 chr11 136433761 136433802 -14349751 - L2 LINE L2 -4 3268 3224 263 333 16 62 chr11 136433948 136434077 -14349476 - L2 LINE L2 -212 3060 2938 583 269 86 39 chr11 136434147 136434381 -14349172 - MIR SINE MIR -14 248 4 21 0 0 0 chr11 136434799 136434820 -14348733 + AT_rich Low_complexity Low_complexity 1 21 0 1556 170 7 4 chr11 136436212 136436483 -14347070 - AluJo SINE Alu -27 285 14 412 162 99 45 chr11 136436520 136436631 -14346922 + MIR SINE MIR 102 218 -44 427 294 0 6 chr11 136437200 136437363 -14346190 + (TG)n Simple_repeat Simple_repeat 1 162 0 250 305 19 0 chr11 136437384 136437489 -14346064 + (TG)n Simple_repeat Simple_repeat 1 107 0 189 182 0 0 chr11 136437544 136437599 -14345954 + (TG)n Simple_repeat Simple_repeat 2 56 0 340 266 12 30 chr11 136437643 136437812 -14345741 + (TG)n Simple_repeat Simple_repeat 1 166 0 234 0 0 0 chr11 136437855 136437881 -14345672 + (TG)n Simple_repeat Simple_repeat 1 26 0 248 252 48 68 chr11 136438226 136438329 -14345224 + L2 LINE L2 3149 3249 -23 249 191 0 0 chr11 136438330 136438372 -14345181 - L2 LINE L2 -3 3310 3269 354 259 129 29 chr11 136438898 136439037 -14344516 + L2 LINE L2 3160 3312 -1 253 185 111 19 chr11 136439457 136439511 -14344042 - L2 LINE L2 -1 3312 3254 276 310 175 33 chr11 136439773 136440244 -14343309 - L2 LINE L2 -82 3190 2632 639 272 53 34 chr11 136440766 136440982 -14342571 + MIR SINE MIR 16 238 -24 362 259 17 17 chr11 136441283 136441399 -14342154 - L1MC5 LINE L1 -51 7910 7795 30 0 0 0 chr11 136441886 136441916 -14341637 + AT_rich Low_complexity Low_complexity 1 30 0 291 312 144 19 chr11 136442442 136442657 -14340896 - MIR SINE MIR -20 242 1 1838 139 0 0 chr11 136442698 136443014 -14340539 - AluSx SINE Alu 0 316 1 281 341 91 8 chr11 136443015 136443147 -14340406 - MIR SINE MIR -102 160 18 355 234 70 52 chr11 136445828 136445992 -14337561 - MIR SINE MIR -61 147 30 2085 108 0 23 chr11 136446144 136446451 -14337102 + AluSx SINE Alu 1 300 -12 1945 104 16 10 chr11 136446469 136446777 -14336776 - AluSp SINE Alu -3 310 1 549 214 151 0 chr11 136446939 136447065 -14336488 + MER3 DNA MER1_type 1 145 -64 482 226 131 24 chr11 136447747 136447915 -14335638 - MIR3 SINE MIR -4 204 19 238 330 39 29 chr11 136447998 136448101 -14335452 + MIR3 SINE MIR 64 167 -41 268 260 186 51 chr11 136449249 136449426 -14334127 + MIR SINE MIR 34 234 -28 408 216 266 7 chr11 136449874 136450013 -14333540 + MIR3 SINE MIR 23 197 -11 1136 198 134 30 chr11 136450160 136450488 -14333065 + MLT1A1 LTR MaLR 4 365 0 2283 82 20 0 chr11 136450685 136450988 -14332565 - AluSc SINE Alu 0 309 1 2050 199 93 45 chr11 136451962 136452315 -14331238 - MLT1E LTR MaLR -41 552 164 2953 102 88 77 chr11 136452315 136452836 -14330717 - MER1A DNA MER1_type 0 527 1 2050 199 93 45 chr11 136452836 136453009 -14330544 - MLT1E LTR MaLR -429 164 1 344 305 195 21 chr11 136453062 136453333 -14330220 - L2 LINE L2 -27 3245 2890 2343 107 0 7 chr11 136453333 136453642 -14329911 - AluSg SINE Alu -3 307 1 344 305 195 21 chr11 136453642 136453744 -14329809 - L2 LINE L2 -382 2890 2807 878 188 24 0 chr11 136454292 136454462 -14329091 + AluJb SINE Alu 121 294 -18 2440 84 10 0 chr11 136454762 136455071 -14328482 - AluSx SINE Alu 0 312 1 402 107 0 0 chr11 136455071 136455127 -14328426 + MADE1 DNA Mariner 25 80 0 366 305 67 6 chr11 136455910 136456074 -14327479 - MIR SINE MIR -16 246 73 2401 60 3 22 chr11 136459242 136459558 -14323995 + AluY SINE Alu 1 310 -1 1274 103 27 0 chr11 136459560 136459745 -14323808 + AluY SINE Alu 119 308 -3 2203 78 35 0 chr11 136459973 136460257 -14323296 + AluSc SINE Alu 1 294 -15 2044 115 10 13 chr11 136460277 136460582 -14322971 - AluSc SINE Alu -5 304 1 184 61 91 0 chr11 136461000 136461033 -14322520 + MIR SINE MIR 118 153 -109 366 23 0 0 chr11 136461379 136461438 -14322115 + (TG)n Simple_repeat Simple_repeat 1 102 0 366 23 0 0 chr11 136461438 136461481 -14322072 + (TG)n Simple_repeat Simple_repeat 2 44 0 2110 120 3 0 chr11 136461492 136461776 -14321777 - AluSx SINE Alu -27 285 1 2161 167 71 3 chr11 136461996 136462396 -14321157 - MSTB1 LTR MaLR -3 429 1 2385 75 0 26 chr11 136464204 136464512 -14319041 - AluSq SINE Alu -13 300 1 2518 199 69 22 chr11 136464560 136464720 -14318833 - MER119 DNA MER1_type -1 582 431 378 0 0 0 chr11 136464720 136464762 -14318791 + (CA)n Simple_repeat Simple_repeat 2 43 0 2518 199 69 22 chr11 136464762 136465153 -14318400 - MER119 DNA MER1_type -152 431 5 281 192 50 10 chr11 136465415 136465514 -14318039 + GA-rich Low_complexity Low_complexity 2 104 0 239 342 8 17 chr11 136466604 136466721 -14316832 - L3b LINE CR1 -349 1234 1119 267 360 20 27 chr11 136467377 136467524 -14316029 + MIR3 SINE MIR 56 201 -7 226 351 0 0 chr11 136467700 136467777 -14315776 - MIR SINE MIR -10 252 176 549 297 7 93 chr11 136467861 136468151 -14315402 + L2 LINE L2 3005 3269 -3 198 118 0 0 chr11 136468156 136468190 -14315363 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 1397 146 18 13 chr11 136468544 136468770 -14314783 + AluJb SINE Alu 84 310 -2 2300 118 0 0 chr11 136470696 136471000 -14312553 - AluSx SINE Alu -8 304 1 2344 105 0 10 chr11 136471561 136471875 -14311678 - AluSx SINE Alu -1 311 1 1702 151 41 0 chr11 136471878 136472169 -14311384 - L1MA8 LINE L1 -1 6290 5988 211 260 219 0 chr11 136474765 136474861 -14308692 - L2 LINE L2 0 3272 3156 181 291 13 25 chr11 136474917 136474996 -14308557 + MIR SINE MIR 54 131 -77 1005 165 10 31 chr11 136475052 136475246 -14308307 + AluJo SINE Alu 123 312 0 1031 188 72 14 chr11 136475324 136475531 -14308022 + MER20 DNA MER1_type 1 219 0 33 61 0 0 chr11 136476477 136476526 -14307027 + AT_rich Low_complexity Low_complexity 1 49 0 1893 126 27 14 chr11 136476912 136477206 -14306347 - AluSq SINE Alu -15 298 1 727 176 0 0 chr11 136477350 136477469 -14306084 + FLAM_C SINE Alu 1 119 -24 395 306 69 46 chr11 136478612 136478828 -14304725 + MIR SINE MIR 20 240 -22 2263 83 0 17 chr11 136479012 136479314 -14304239 - AluY SINE Alu -2 309 13 7527 113 16 32 chr11 136479414 136479549 -14304004 - HERVH LTR ERV1 -6058 1655 1519 14864 24 2 0 chr11 136479549 136482044 -14301509 - L1PA2 LINE L1 0 6155 3670 7527 113 16 32 chr11 136482044 136483783 -14299770 - HERVH LTR ERV1 -6194 1519 1 2807 74 112 0 chr11 136483785 136484188 -14299365 - LTR7 LTR ERV1 -2 448 1 2510 200 127 42 chr11 136484243 136484462 -14299091 + LTR48 LTR ERV1 1 200 -587 1570 140 0 0 chr11 136484462 136484690 -14298863 + AluSg/x SINE Alu 78 305 -7 2510 200 127 42 chr11 136484690 136485185 -14298368 + LTR48 LTR ERV1 200 776 -11 1061 268 68 37 chr11 136485190 136485688 -14297865 + LTR49-int LTR ERV1 14 1212 -5051 2622 181 93 51 chr11 136485978 136486333 -14297220 - LTR8 LTR ERV1 0 691 352 216 0 0 0 chr11 136486333 136486357 -14297196 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2622 181 93 51 chr11 136486357 136486664 -14296889 - LTR8 LTR ERV1 -339 352 1 1585 229 26 0 chr11 136486665 136486975 -14296578 - HUERS-P1 LTR ERV1 -1 6262 5945 1303 183 60 47 chr11 136487079 136487396 -14296157 - HUERS-P1 LTR ERV1 -105 6226 5906 5599 162 51 11 chr11 136487408 136488491 -14295062 - HUERS-P1 LTR ERV1 -541 5790 4665 3280 178 18 46 chr11 136488519 136489193 -14294360 - HUERS-P1 LTR ERV1 -5171 1092 438 1509 173 55 4 chr11 136489258 136489512 -14294041 - HUERS-P1 LTR ERV1 -5996 267 1 2978 178 87 44 chr11 136489512 136490170 -14293383 - LTR8 LTR ERV1 0 691 6 594 223 138 73 chr11 136490700 136490912 -14292641 + LTR49-int LTR ERV1 426 426 -4510 2110 124 0 7 chr11 136490912 136491223 -14292330 - AluSx SINE Alu 0 312 1 594 223 138 73 chr11 136491223 136491416 -14292137 + LTR49-int LTR ERV1 425 604 -4332 2417 85 0 10 chr11 136491896 136492201 -14291352 + AluSq SINE Alu 1 302 -11 737 252 50 97 chr11 136492361 136492809 -14290744 + MER39 LTR ERV1 5 590 -117 280 227 59 109 chr11 136492825 136492866 -14290687 + MER34 LTR ERV1 21 63 -479 1630 160 53 7 chr11 136492866 136493148 -14290405 - AluJo SINE Alu -17 295 1 280 227 59 109 chr11 136493148 136493225 -14290328 + MER34 LTR ERV1 63 133 -409 * 311 159 0 63 chr11 136493200 136493263 -14290290 + LTR29 LTR ERV1 137 195 -427 * 1549 227 162 18 chr11 136493255 136493744 -14289809 + LTR48B LTR ERV1 82 640 -4 349 232 40 10 chr11 136493754 136493853 -14289700 + MER39 LTR ERV1 604 705 -2 23 0 0 0 chr11 136495495 136495518 -14288035 + AT_rich Low_complexity Low_complexity 1 23 0 914 144 0 0 chr11 136496992 136497124 -14286429 + FLAM_C SINE Alu 1 132 -1 2230 119 3 3 chr11 136499240 136499550 -14284003 + AluSx SINE Alu 1 310 -2 199 259 17 0 chr11 136500256 136500314 -14283239 + L2 LINE L2 3250 3308 -5 1820 161 0 17 chr11 136500760 136501052 -14282501 + AluJo SINE Alu 1 287 -25 983 230 50 37 chr11 136501059 136501371 -14282182 - L1MD3 LINE L1 -25 7970 6029 1284 126 117 82 chr11 136502867 136503053 -14280500 + THE1B LTR MaLR 7 185 -179 2353 96 3 10 chr11 136503053 136503367 -14280186 - AluSq SINE Alu -1 312 1 1284 126 117 82 chr11 136503367 136503583 -14279970 + THE1B LTR MaLR 185 364 0 353 318 76 36 chr11 136503914 136504137 -14279416 - MIR SINE MIR -10 252 21 2330 88 0 0 chr11 136506276 136506581 -14276972 - AluSc SINE Alu -4 305 1 1825 151 7 0 chr11 136507709 136508001 -14275552 + AluSx SINE Alu 1 294 -18 1935 110 0 42 chr11 136508033 136508342 -14275211 - AluY SINE Alu -1 310 15 2275 78 14 0 chr11 136509108 136509403 -14274150 - AluSp SINE Alu -14 299 1 2400 78 0 0 chr11 136509873 136510181 -14273372 - AluSc SINE Alu -1 308 1 24 32 0 0 chr11 136510426 136510457 -14273096 + AT_rich Low_complexity Low_complexity 1 31 0 822 185 7 0 chr11 136510457 136510608 -14272945 - FRAM SINE Alu -24 152 1 243 276 0 0 chr11 136511070 136511128 -14272425 + L2 LINE L2 3255 3312 -1 311 336 88 7 chr11 136512036 136512173 -14271380 + MIR SINE MIR 18 165 -97 343 304 15 44 chr11 136513390 136513525 -14270028 - MIR SINE MIR -3 259 129 1849 129 34 3 chr11 136514115 136514409 -14269144 + AluSx SINE Alu 1 303 -9 2050 103 3 13 chr11 136515213 136515513 -14268040 - AluSx SINE Alu -15 297 1 389 296 15 23 chr11 136515687 136515819 -14267734 - MER5A DNA MER1_type -3 186 56 2113 134 0 6 chr11 136515993 136516307 -14267246 + AluSx SINE Alu 1 312 0 722 257 11 11 chr11 136517213 136517388 -14266165 - MIR SINE MIR -77 185 11 2038 120 0 13 chr11 136517647 136517947 -14265606 - AluSx SINE Alu -16 296 1 186 333 0 0 chr11 136518831 136518876 -14264677 - MIR SINE MIR -106 102 58 2069 115 0 0 chr11 136520037 136520324 -14263229 - AluSq SINE Alu -26 287 1 222 243 171 14 chr11 136520801 136520914 -14262639 + MIR SINE MIR 112 245 -17 608 130 20 0 chr11 136521938 136522038 -14261515 - AluSc SINE Alu -16 293 192 400 86 17 0 chr11 136522138 136522196 -14261357 + Alu SINE Alu 241 299 -13 718 210 129 82 chr11 136522206 136522272 -14261281 - L1MC5 LINE L1 -210 7751 7690 2039 106 33 0 chr11 136522272 136522573 -14260980 + AluSx SINE Alu 1 311 -1 718 210 129 82 chr11 136522573 136522683 -14260870 - L1MC5 LINE L1 -271 7690 7587 306 0 0 0 chr11 136522683 136522717 -14260836 + (TG)n Simple_repeat Simple_repeat 1 34 0 718 210 129 82 chr11 136522717 136522943 -14260610 - L1MC5 LINE L1 -374 7587 7329 279 349 126 8 chr11 136523187 136523442 -14260111 - L2 LINE L2 -4 3309 3025 2189 91 37 0 chr11 136523539 136523837 -14259716 - AluSp SINE Alu -4 309 1 477 301 19 26 chr11 136524161 136524317 -14259236 + L2 LINE L2 3159 3313 0 2051 106 26 10 chr11 136524456 136524759 -14258794 - AluSx SINE Alu -4 308 1 377 187 45 108 chr11 136524826 136525015 -14258538 - MIR SINE MIR -68 140 14 2189 106 0 3 chr11 136525805 136526106 -14257447 - AluSx SINE Alu -10 302 3 238 153 34 17 chr11 136527171 136527230 -14256323 + CT-rich Low_complexity Low_complexity 1 60 0 976 133 13 0 chr11 136527230 136527380 -14256173 - AluSg/x SINE Alu -39 273 122 1979 86 0 77 chr11 136527384 136527553 -14256000 - AluSx SINE Alu -11 301 167 2367 48 0 0 chr11 136527553 136527883 -14255670 - AluY SINE Alu 0 311 1 1979 86 0 77 chr11 136527883 136528039 -14255514 - AluSx SINE Alu -145 167 1 22 35 0 0 chr11 136528149 136528178 -14255375 + AT_rich Low_complexity Low_complexity 1 29 0 2923 149 63 23 chr11 136528423 136529099 -14254454 - MER21A LTR ERV1 0 931 103 271 155 0 0 chr11 136529094 136529152 -14254401 - LTR66 LTR ERVL -158 452 395 * 312 255 0 82 chr11 136529155 136529253 -14254300 - L1MC4 LINE L1 -1339 6703 6614 374 235 0 0 chr11 136529263 136529348 -14254205 + MIR SINE MIR 178 262 0 480 298 70 13 chr11 136529819 136529977 -14253576 - MIR3 SINE MIR -6 202 36 628 224 145 47 chr11 136530937 136531151 -14252402 + MIR SINE MIR 12 246 -16 285 254 202 0 chr11 136531666 136531780 -14251773 - L2 LINE L2 -5 3308 3172 1158 162 63 153 chr11 136531798 136532293 -14251260 - LTR7 LTR ERV1 0 450 1 2251 97 7 0 chr11 136532530 136532838 -14250715 + AluSx SINE Alu 1 310 -2 180 350 12 12 chr11 136532865 136532945 -14250608 - L2 LINE L2 0 3313 3234 789 244 132 15 chr11 136533005 136533345 -14250208 - MER113 DNA MER1_type? -51 470 91 910 194 0 0 chr11 136533358 136533518 -14250035 + FAM SINE Alu 6 165 -20 189 0 0 0 chr11 136533521 136533542 -14250011 + (GGAA)n Simple_repeat Simple_repeat 1 21 0 2228 99 0 0 chr11 136533849 136534203 -14249350 - AluSx SINE Alu 0 354 1 191 36 36 0 chr11 136534520 136534548 -14249005 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2143 125 0 0 chr11 136534877 136535189 -14248364 - AluSx SINE Alu 0 312 1 1684 135 99 0 chr11 136535264 136535546 -14248007 - AluSx SINE Alu -2 310 1 207 150 0 25 chr11 136536213 136536253 -14247300 - MIR SINE MIR -112 150 112 861 128 7 0 chr11 136536253 136536394 -14247159 + AluSp/q SINE Alu 162 303 -10 497 344 25 22 chr11 136536778 136537021 -14246532 - MIR SINE MIR -19 243 1 1999 120 3 0 chr11 136537787 136538087 -14245466 - AluSq SINE Alu -10 303 3 216 303 71 20 chr11 136538309 136538408 -14245145 + MIR SINE MIR 80 183 -79 1654 162 3 17 chr11 136538425 136538823 -14244730 - AluJb SINE Alu 0 312 1 2162 110 0 0 chr11 136539438 136539737 -14243816 - AluSx SINE Alu -13 299 1 189 0 0 0 chr11 136540788 136540809 -14242744 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 813 178 7 0 chr11 136540813 136540959 -14242594 - FRAM SINE Alu -30 146 1 2188 98 0 3 chr11 136541469 136541766 -14241787 - AluSq SINE Alu -17 296 1 218 231 0 0 chr11 136541999 136542038 -14241515 + L2 LINE L2 3225 3263 -9 2284 80 0 3 chr11 136542085 136542387 -14241166 + AluY SINE Alu 1 301 -10 2167 90 3 0 chr11 136543457 136543745 -14239808 - AluSx SINE Alu -19 293 5 738 135 0 0 chr11 136544106 136544210 -14239343 + AluSq/x SINE Alu 2 105 -207 883 108 23 0 chr11 136544316 136544446 -14239107 - FLAM_C SINE Alu 0 133 1 239 170 19 19 chr11 136544446 136544499 -14239054 - L1MC5 LINE L1 -179 7782 7730 356 238 171 38 chr11 136544516 136544726 -14238827 - L1MC5 LINE L1 -177 7784 7547 444 262 103 16 chr11 136545150 136545276 -14238277 + MIR3 SINE MIR 66 202 -6 339 305 85 8 chr11 136545338 136545456 -14238097 + L2 LINE L2 3180 3306 -7 235 276 35 0 chr11 136545465 136545523 -14238030 - L2 LINE L2 -8 3264 3205 744 149 9 0 chr11 136545987 136546131 -14237422 + FLAM_C SINE Alu 2 146 0 213 266 16 47 chr11 136546634 136546698 -14236855 - MIR3 SINE MIR -17 191 130 2034 102 33 7 chr11 136547484 136547787 -14235766 + AluSx SINE Alu 2 312 0 304 294 42 80 chr11 136548055 136548317 -14235236 + L2 LINE L2 2848 3099 -173 191 333 200 8 chr11 136548374 136548494 -14235059 + L2 LINE L2 3124 3266 -6 767 288 82 0 chr11 136548504 136548737 -14234816 - MIR SINE MIR -10 252 1 276 312 159 6 chr11 136549468 136549625 -14233928 + MIR SINE MIR 32 212 -50 350 343 43 5 chr11 136549636 136549795 -14233758 + MER5A DNA MER1_type 1 167 -16 2371 67 0 0 chr11 136549862 136550160 -14233393 + AluY SINE Alu 1 298 -13 303 291 68 6 chr11 136550619 136550787 -14232766 + MIR SINE MIR 35 211 -51 2233 84 3 3 chr11 136551594 136551902 -14231651 - AluY SINE Alu -3 308 1 2889 265 181 6 chr11 136551911 136553191 -14230362 - L2 LINE L2 -19 3294 1767 267 233 190 17 chr11 136553588 136553704 -14229849 - MIR3 SINE MIR -48 160 25 * 373 267 145 29 chr11 136553641 136553813 -14229740 + MIR SINE MIR 59 250 -12 1151 172 0 5 chr11 136553813 136554028 -14229525 - AluJb SINE Alu -14 298 85 419 246 126 60 chr11 136554240 136554439 -14229114 - MIR SINE MIR -17 245 34 1898 129 0 52 chr11 136554641 136554967 -14228586 + AluSx SINE Alu 1 309 -3 1201 168 0 15 chr11 136556475 136556677 -14226876 + AluJb SINE Alu 85 283 -29 512 268 88 44 chr11 136557551 136557621 -14225932 - MIR SINE MIR 0 262 197 2625 52 0 0 chr11 136557621 136557930 -14225623 + AluY SINE Alu 1 309 -2 512 268 88 44 chr11 136557930 136558109 -14225444 - MIR SINE MIR -65 197 2 385 266 14 25 chr11 136558185 136558339 -14225214 - MIR SINE MIR -62 146 3 255 217 58 0 chr11 136558516 136558585 -14224968 + L3 LINE CR1 1403 1475 -102 253 295 86 86 chr11 136558614 136558824 -14224729 + LTR67 LTR ERVL 20 229 -328 295 209 146 45 chr11 136558837 136558947 -14224606 + LTR67 LTR ERVL 405 525 -32 244 330 19 29 chr11 136558985 136559088 -14224465 + MER5A DNA MER1_type 16 117 -72 390 48 7 7 chr11 136559103 136559170 -14224383 - AluY SINE Alu -3 298 248 2741 42 3 0 chr11 136559659 136559968 -14223585 + AluY SINE Alu 1 310 -1 320 324 73 0 chr11 136562316 136562495 -14221058 + MIR SINE MIR 52 243 -19 2255 97 10 0 chr11 136562693 136562991 -14220562 - AluSx SINE Alu -11 301 1 1855 145 17 17 chr11 136563611 136563901 -14219652 - AluJb SINE Alu -22 290 1 193 356 110 12 chr11 136563964 136564127 -14219426 - MIR SINE MIR -28 234 56 2399 82 0 13 chr11 136564272 136564576 -14218977 + AluSq SINE Alu 1 300 -13 8114 92 6 6 chr11 136564744 136565868 -14217685 + HERVH LTR ERV1 1864 2987 -4726 906 142 20 0 chr11 136565862 136566010 -14217543 + HERVH LTR ERV1 3140 3290 -4423 * 3420 115 4 6 chr11 136566000 136566503 -14217050 + HERVH LTR ERV1 3492 3993 -3720 4495 136 0 1 chr11 136566505 136567168 -14216385 + HERVH LTR ERV1 4488 5149 -2564 1409 115 23 9 chr11 136567169 136567386 -14216167 + HERVH LTR ERV1 5600 5819 -1894 * 2463 100 42 13 chr11 136567384 136567765 -14215788 + HERVH LTR ERV1 7322 7713 0 2831 81 98 0 chr11 136567765 136568173 -14215380 + LTR7 LTR ERV1 1 448 -2 182 238 100 75 chr11 136568239 136568319 -14215234 - MIR SINE MIR -70 192 111 312 301 123 53 chr11 136568326 136568758 -14214795 - L2 LINE L2 -4 3309 2848 909 238 152 0 chr11 136568828 136569105 -14214448 + MER58B DNA MER1_type 21 339 -2 735 313 30 0 chr11 136569219 136569452 -14214101 - MIR SINE MIR 0 262 23 333 0 0 0 chr11 136570086 136570123 -14213430 + (TG)n Simple_repeat Simple_repeat 2 38 0 1977 123 26 17 chr11 136570171 136570473 -14213080 - AluSx SINE Alu -7 305 1 305 245 53 73 chr11 136570560 136570711 -14212842 - MIR3 SINE MIR -60 148 1 519 276 158 13 chr11 136571745 136571973 -14211580 - LTR16A LTR ERVL 0 450 190 1964 172 0 3 chr11 136572125 136572428 -14211125 - AluJb SINE Alu -10 302 1 200 310 0 0 chr11 136572677 136572748 -14210805 + L2 LINE L2 3165 3235 -78 750 188 0 0 chr11 136572795 136572955 -14210598 + (TGGA)n Simple_repeat Simple_repeat 3 162 0 1197 162 5 0 chr11 136573000 136573393 -14210160 + (TGGA)n Simple_repeat Simple_repeat 1 395 0 2394 57 0 14 chr11 136574265 136574582 -14208971 - AluY SINE Alu 0 311 1 295 273 33 67 chr11 136574600 136574750 -14208803 + MIR SINE MIR 72 216 -46 337 239 155 7 chr11 136575566 136575708 -14207845 - MIR SINE MIR -32 230 68 180 0 0 0 chr11 136575771 136575791 -14207762 + (TG)n Simple_repeat Simple_repeat 2 21 0 2471 75 0 0 chr11 136576755 136577050 -14206503 - AluY SINE Alu -16 295 1 2149 95 3 7 chr11 136577618 136577930 -14205623 - AluSq SINE Alu 0 311 1 184 378 12 0 chr11 136577984 136578066 -14205487 - L2 LINE L2 -666 2648 2566 1667 115 59 12 chr11 136580184 136580437 -14203116 - AluSp SINE Alu -48 265 1 1930 125 24 0 chr11 136580999 136581288 -14202265 - AluSx SINE Alu -16 296 1 1857 171 36 14 chr11 136581455 136581811 -14201742 + L1MB7 LINE L1 5812 6175 -9 2105 112 0 17 chr11 136581812 136582107 -14201446 - AluSx SINE Alu -22 290 1 966 235 66 33 chr11 136582125 136582491 -14201062 + L1MC5 LINE L1 7534 7911 -50 2390 66 0 11 chr11 136582579 136582893 -14200660 + AluY SINE Alu 1 311 0 967 201 0 6 chr11 136583653 136583827 -14199726 - FRAM SINE Alu -5 171 1 1433 237 148 5 chr11 136584069 136584474 -14199079 - L1MC4 LINE L1 -151 7891 7429 1590 109 0 0 chr11 136584474 136584675 -14198878 + AluSx SINE Alu 1 201 -111 321 116 0 0 chr11 136584691 136584734 -14198819 - Alu SINE Alu -259 44 2 2232 97 0 0 chr11 136584902 136585191 -14198362 + AluSg SINE Alu 1 289 -21 597 174 0 0 chr11 136585297 136585389 -14198164 - AluJ/FLAM SINE Alu -210 102 11 1253 150 16 0 chr11 136585397 136585590 -14197963 - MSTB LTR MaLR -230 196 1 436 175 21 196 chr11 136585590 136585746 -14197807 + L1MC5 LINE L1 6790 6892 -1069 2266 93 4 0 chr11 136585746 136586072 -14197481 + AluSc SINE Alu 1 327 0 436 175 21 196 chr11 136586072 136586154 -14197399 + L1MC5 LINE L1 6892 6987 -974 1367 176 88 10 chr11 136586214 136586509 -14197044 + L1M4 LINE L1 5362 5679 -505 2239 112 3 0 chr11 136586830 136587135 -14196418 + AluSx SINE Alu 6 311 -1 40 21 0 0 chr11 136587158 136587205 -14196348 + AT_rich Low_complexity Low_complexity 1 47 0 1679 169 7 27 chr11 136587438 136587734 -14195819 - AluJb SINE Alu -22 290 1 755 211 64 0 chr11 136588234 136588390 -14195163 - FAM SINE Alu -9 166 1 303 236 62 149 chr11 136588740 136588803 -14194750 + MER5B DNA MER1_type 1 68 -110 2225 87 42 0 chr11 136588803 136589091 -14194462 + AluSp SINE Alu 1 300 -13 303 236 62 149 chr11 136589091 136589222 -14194331 + MER5B DNA MER1_type 68 178 0 653 273 17 6 chr11 136589235 136589411 -14194142 - MER5B DNA MER1_type 0 178 1 820 211 32 11 chr11 136589419 136589604 -14193949 - MER5A DNA MER1_type 0 189 1 524 215 168 0 chr11 136589613 136589762 -14193791 - MER5A DNA MER1_type -6 183 10 1282 116 0 20 chr11 136589932 136590130 -14193423 - AluSg/x SINE Alu -6 306 113 766 148 22 22 chr11 136590289 136590424 -14193129 - FLAM_C SINE Alu -7 136 2 25 0 0 28 chr11 136590732 136590751 -14192802 + AT_rich Low_complexity Low_complexity 1 20 -15 1792 126 74 0 chr11 136590751 136591022 -14192531 - AluSx SINE Alu -21 291 1 25 0 0 28 chr11 136591022 136591038 -14192515 + AT_rich Low_complexity Low_complexity 20 35 0 210 37 0 0 chr11 136591055 136591082 -14192471 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 573 302 88 0 chr11 136591497 136591712 -14191841 - MIR SINE MIR -24 238 5 543 325 66 33 chr11 136591770 136592192 -14191361 + L3 LINE CR1 697 1132 -445 357 236 163 0 chr11 136592520 136592643 -14190910 - MER5B DNA MER1_type -35 143 1 21 0 0 0 chr11 136593291 136593312 -14190241 + AT_rich Low_complexity Low_complexity 1 21 0 331 248 40 81 chr11 136593797 136593873 -14189680 + MIR SINE MIR 111 180 -82 2185 122 0 3 chr11 136593873 136594168 -14189385 + AluSx SINE Alu 1 294 -18 331 248 40 81 chr11 136594168 136594240 -14189313 + MIR SINE MIR 180 253 -9 2127 122 0 13 chr11 136595410 136595714 -14187839 + AluSx SINE Alu 1 300 -12 474 236 0 32 chr11 136595946 136596069 -14187484 + MER20 DNA MER1_type 1 119 -100 311 352 31 8 chr11 136596533 136596661 -14186892 - L2 LINE L2 -17 3255 3125 2067 91 13 30 chr11 136597501 136597799 -14185754 - AluSc SINE Alu -16 293 1 1977 107 32 11 chr11 136597948 136598228 -14185325 - AluSx SINE Alu -26 286 1 234 311 142 11 chr11 136599292 136599482 -14184071 + L1MC4a LINE L1 5407 5621 -500 904 190 56 43 chr11 136599485 136599675 -14183878 + MIR SINE MIR 3 199 -63 1876 132 4 0 chr11 136599675 136599965 -14183588 + AluSx SINE Alu 25 315 0 904 190 56 43 chr11 136599965 136600005 -14183548 + MIR SINE MIR 199 237 -25 947 261 29 14 chr11 136600051 136600327 -14183226 + L1MC4a LINE L1 5614 5893 -1915 1888 138 20 7 chr11 136600346 136600644 -14182909 + AluSx SINE Alu 1 302 -10 357 278 67 72 chr11 136601553 136601733 -14181820 - L2 LINE L2 -2 3311 3133 2338 109 3 0 chr11 136601777 136602088 -14181465 + AluSp SINE Alu 1 312 -1 2357 97 0 0 chr11 136602157 136602456 -14181097 + AluSx SINE Alu 1 299 -13 226 340 10 10 chr11 136602479 136602576 -14180977 - L2 LINE L2 -254 3059 2963 1133 161 16 5 chr11 136602716 136602908 -14180645 + AluJb SINE Alu 106 299 -13 23 33 0 0 chr11 136602980 136603010 -14180543 + AT_rich Low_complexity Low_complexity 1 30 0 183 307 50 40 chr11 136603566 136603667 -14179886 + L2 LINE L2 2755 2856 -458 217 246 174 0 chr11 136603963 136604032 -14179521 + L2 LINE L2 3189 3269 -3 22 35 0 0 chr11 136604332 136604361 -14179192 + AT_rich Low_complexity Low_complexity 1 29 0 2267 92 0 0 chr11 136604572 136604895 -14178658 - AluSg SINE Alu 0 323 1 188 331 24 107 chr11 136605451 136605650 -14177903 - L2 LINE L2 -93 3179 3010 2247 114 0 13 chr11 136605650 136605966 -14177587 - AluSx SINE Alu 0 312 1 188 331 24 107 chr11 136605966 136606056 -14177497 - L2 LINE L2 -262 3010 2914 2156 130 20 0 chr11 136606134 136606479 -14177074 + L1MA4A LINE L1 5945 6296 -7 1719 167 37 0 chr11 136606781 136607081 -14176472 - AluSx SINE Alu -1 311 1 195 306 83 70 chr11 136607492 136607584 -14175969 - L2 LINE L2 -431 2883 2787 1143 187 5 0 chr11 136607584 136607771 -14175782 + MER5A DNA MER1_type 1 188 -1 195 306 83 70 chr11 136607771 136607835 -14175718 - L2 LINE L2 -527 2787 2725 196 29 0 57 chr11 136608034 136608069 -14175484 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2052 135 0 0 chr11 136608071 136608353 -14175200 - AluSx SINE Alu -30 282 1 545 272 111 74 chr11 136608354 136608707 -14174846 - L2 LINE L2 -12 3301 2936 351 307 93 94 chr11 136609007 136609223 -14174330 - L2 LINE L2 -94 3178 2963 2326 100 3 3 chr11 136609223 136609532 -14174021 + AluSx SINE Alu 1 309 -3 351 307 93 94 chr11 136609532 136609769 -14173784 - L2 LINE L2 -309 2963 2721 1011 98 8 0 chr11 136609848 136609980 -14173573 + AluSq/x SINE Alu 1 133 -179 1738 161 47 0 chr11 136611857 136612155 -14171398 + AluSx SINE Alu 1 312 0 2657 42 3 0 chr11 136612679 136612986 -14170567 + AluY SINE Alu 1 308 -3 235 310 80 0 chr11 136613075 136613175 -14170378 + L3 LINE CR1 788 895 -682 436 267 122 12 chr11 136613251 136613423 -14170130 + L3 LINE CR1 1212 1402 -175 234 365 173 0 chr11 136613548 136613652 -14169901 + L3 LINE CR1 1454 1575 -2 2216 102 0 0 chr11 136614651 136614934 -14168619 + AluSx SINE Alu 1 283 -29 1748 181 3 10 chr11 136615365 136615675 -14167878 - AluJb SINE Alu -2 310 3 1617 188 7 16 chr11 136615690 136615994 -14167559 - AluJb SINE Alu -11 301 1 1752 183 7 0 chr11 136615995 136616290 -14167263 - AluJb SINE Alu -13 299 3 3854 173 28 34 chr11 136616375 136616573 -14166980 - Charlie1 DNA MER1_type -1 2760 2562 1970 129 13 7 chr11 136616573 136616875 -14166678 - AluSq SINE Alu -9 304 1 3854 173 28 34 chr11 136616875 136617497 -14166056 - Charlie1 DNA MER1_type -199 2562 1945 449 207 25 25 chr11 136617488 136617525 -14166028 + MER3 DNA MER1_type 89 125 -84 * 1989 142 3 10 chr11 136617525 136617821 -14165732 - AluSq SINE Alu -19 294 1 449 207 25 25 chr11 136617821 136617904 -14165649 + MER3 DNA MER1_type 124 209 0 1775 159 27 17 chr11 136618173 136618468 -14165085 - AluJb SINE Alu -14 298 1 267 189 0 0 chr11 136618820 136618873 -14164680 + (TA)n Simple_repeat Simple_repeat 1 53 0 1240 174 6 70 chr11 136618890 136619206 -14164347 - AluSx SINE Alu -6 296 1 591 286 26 40 chr11 136619356 136619583 -14163970 - MIR SINE MIR -10 252 29 240 213 0 0 chr11 136619588 136619649 -14163904 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 248 309 124 0 chr11 136620591 136620688 -14162865 + L2 LINE L2 3146 3254 -18 909 14 57 14 chr11 136620694 136620835 -14162718 + (GAAA)n Simple_repeat Simple_repeat 1 147 0 350 331 32 32 chr11 136621680 136621837 -14161716 + MIR SINE MIR 3 159 -103 230 330 42 49 chr11 136622209 136622473 -14161080 + L2 LINE L2 1901 2162 -1152 2273 86 7 0 chr11 136622491 136622782 -14160771 - AluSp SINE Alu -20 293 1 960 173 12 0 chr11 136622858 136623031 -14160522 - FRAM SINE Alu 0 176 2 243 152 0 0 chr11 136623258 136623304 -14160249 + (TATATG)n Simple_repeat Simple_repeat 1 46 0 256 353 136 52 chr11 136624026 136624055 -14159498 - L3b LINE CR1 -2 1581 1556 1839 136 13 33 chr11 136624055 136624357 -14159196 - AluJo SINE Alu -16 296 1 256 353 136 52 chr11 136624357 136624599 -14158954 - L3b LINE CR1 -27 1556 1287 1894 255 46 20 chr11 136625590 136625633 -14157920 - MLT2B2 LTR ERVL 0 515 475 447 19 0 0 chr11 136625633 136625685 -14157868 + (TG)n Simple_repeat Simple_repeat 1 52 0 1894 255 46 20 chr11 136625685 136626143 -14157410 - MLT2B2 LTR ERVL -40 475 1 2539 64 0 3 chr11 136626171 136626482 -14157071 + AluY SINE Alu 1 310 -1 2198 119 0 7 chr11 136627522 136627825 -14155728 - AluJb SINE Alu -11 301 1 1956 168 3 0 chr11 136628242 136628552 -14155001 + AluJb SINE Alu 1 311 -1 25 31 0 0 chr11 136629193 136629225 -14154328 + AT_rich Low_complexity Low_complexity 1 32 0 2234 106 3 0 chr11 136629297 136629590 -14153963 + AluSx SINE Alu 1 294 -18 1102 184 32 37 chr11 136630436 136630654 -14152899 - MER20 DNA MER1_type 0 219 3 1175 188 201 21 chr11 136631149 136631718 -14151835 + LTR50 LTR ERVL 1 789 -6 234 62 0 0 chr11 136632196 136632228 -14151325 + (A)n Simple_repeat Simple_repeat 1 32 0 2326 100 3 0 chr11 136632334 136632643 -14150910 - AluSx SINE Alu -2 310 1 1790 161 20 3 chr11 136632649 136632953 -14150600 - AluJb SINE Alu -3 309 1 321 243 29 0 chr11 136633078 136633148 -14150405 - L1ME3A LINE L1 -50 6120 6049 798 273 84 57 chr11 136633290 136633933 -14149620 - L1ME3A LINE L1 -200 5962 5261 206 156 22 0 chr11 136634176 136634221 -14149332 + (CGG)n Simple_repeat Simple_repeat 2 47 0 261 253 72 96 chr11 136635926 136636092 -14147461 - L3 LINE CR1 -20 1557 1396 1536 141 14 45 chr11 136636092 136636382 -14147171 - AluJb SINE Alu -15 297 17 30 45 0 0 chr11 136637871 136637915 -14145638 + AT_rich Low_complexity Low_complexity 1 44 0 793 188 0 0 chr11 136637918 136638035 -14145518 - FLAM_C SINE Alu -25 118 2 923 213 52 5 chr11 136638375 136638586 -14144967 + MIR SINE MIR 7 227 -35 2328 80 0 20 chr11 136638610 136638909 -14144644 - AluSc SINE Alu -16 293 1 239 323 43 50 chr11 136639149 136639310 -14144243 - MIR3 SINE MIR -28 180 21 389 274 28 9 chr11 136639685 136639791 -14143762 - MIR SINE MIR -71 191 84 393 279 235 30 chr11 136640198 136640543 -14143010 - L1ME LINE L1 -413 5757 5351 312 286 11 51 chr11 136640535 136640601 -14142952 - L1MC4a LINE L1 -1910 5898 5831 * 1954 175 21 9 chr11 136640601 136640939 -14142614 - MER2 DNA MER2_type -1 343 2 312 286 11 51 chr11 136640939 136641050 -14142503 - L1MC4a LINE L1 -1977 5831 5728 1764 150 45 3 chr11 136641050 136641337 -14142216 - AluSx SINE Alu -13 299 1 219 337 0 0 chr11 136641379 136641465 -14142088 - L2 LINE L2 -769 2545 2460 700 269 78 5 chr11 136641477 136641696 -14141857 - MIR SINE MIR 0 262 28 21 0 0 0 chr11 136642855 136642876 -14140677 + AT_rich Low_complexity Low_complexity 1 21 0 381 264 121 7 chr11 136642968 136643108 -14140445 - MIR SINE MIR -54 208 53 2369 85 0 0 chr11 136643620 136643913 -14139640 - AluY SINE Alu -18 293 1 25 51 0 0 chr11 136644992 136645031 -14138522 + AT_rich Low_complexity Low_complexity 1 39 0 603 246 74 29 chr11 136645089 136645264 -14138289 - MIR3 SINE MIR -5 203 21 2141 97 50 7 chr11 136645330 136645629 -14137924 + AluSx SINE Alu 1 312 0 852 88 0 0 chr11 136647549 136647662 -14135891 + AluSg/x SINE Alu 198 310 -2 807 202 54 108 chr11 136648089 136648139 -14135414 - MIR SINE MIR -15 247 196 2238 99 0 0 chr11 136648139 136648446 -14135107 - AluSg SINE Alu 0 307 1 807 202 54 108 chr11 136648446 136648509 -14135044 - MIR SINE MIR -66 196 131 1661 169 3 35 chr11 136648509 136648823 -14134730 - AluJb SINE Alu -8 304 1 807 202 54 108 chr11 136648823 136648965 -14134588 - MIR SINE MIR -131 131 4 246 208 0 19 chr11 136649236 136649289 -14134264 - MIR3 SINE MIR -2 206 155 254 372 54 14 chr11 136649406 136649554 -14133999 + L2 LINE L2 3117 3270 -2 490 206 20 0 chr11 136649677 136649779 -14133774 + MIR SINE MIR 80 183 -79 297 293 101 60 chr11 136650083 136650536 -14133017 + L2 LINE L2 2773 3313 0 23 54 0 0 chr11 136650775 136650812 -14132741 + AT_rich Low_complexity Low_complexity 1 37 0 240 256 93 62 chr11 136650851 136650980 -14132573 - L2 LINE L2 -2 3311 3179 241 270 74 61 chr11 136651018 136651181 -14132372 - MIR SINE MIR -51 211 47 225 0 0 0 chr11 136651803 136651828 -14131725 + (T)n Simple_repeat Simple_repeat 1 25 0 6597 128 59 62 chr11 136652282 136652885 -14130668 - Tigger3b DNA MER2_type -1797 1231 628 2500 64 0 0 chr11 136652885 136653181 -14130372 + AluY SINE Alu 1 296 -15 6597 128 59 62 chr11 136653181 136653430 -14130123 - Tigger3b DNA MER2_type -2400 628 380 2840 13 0 0 chr11 136653430 136653739 -14129814 + AluYa5 SINE Alu 1 309 -2 6597 128 59 62 chr11 136653739 136653822 -14129731 - Tigger3b DNA MER2_type -2648 380 298 1783 166 3 26 chr11 136653822 136654124 -14129429 + AluSx SINE Alu 1 295 -17 6597 128 59 62 chr11 136654124 136654135 -14129418 - Tigger3b DNA MER2_type -2730 298 288 2614 130 35 26 chr11 136654135 136654559 -14128994 - MSTA LTR MaLR 0 428 1 6597 128 59 62 chr11 136654559 136654841 -14128712 - Tigger3b DNA MER2_type -2740 288 4 1813 147 7 23 chr11 136655128 136655427 -14128126 - AluJo SINE Alu -18 294 1 13108 196 112 81 chr11 136856801 136858069 -13925484 + L1P LINE L1 174 1402 -4744 234 330 46 9 chr11 136858069 136858178 -13925375 - MLT1I LTR MaLR -278 131 19 13108 196 112 81 chr11 136858178 136858954 -13924599 + L1P LINE L1 1402 2153 -3993 559 220 0 0 chr11 136858954 136859054 -13924499 - MER58B DNA MER1_type -1 340 241 13108 196 112 81 chr11 136859054 136860546 -13923007 + L1P LINE L1 2153 4033 -2113 5656 197 43 41 chr11 136860704 136863134 -13920419 + L1MB8 LINE L1 3739 6170 -8 1208 232 129 65 chr11 136863204 136863492 -13920061 + L1ME2 LINE L1 5486 5754 -410 2042 149 10 0 chr11 136863492 136863800 -13919753 + AluSx SINE Alu 1 311 -1 1208 232 129 65 chr11 136863800 136864141 -13919412 + L1ME2 LINE L1 5754 6155 -9 187 296 19 0 chr11 136864355 136864409 -13919144 + MIR SINE MIR 21 75 -133 460 124 31 8 chr11 136865321 136865450 -13918103 + (CA)n Simple_repeat Simple_repeat 2 133 0 1960 113 3 79 chr11 136866154 136866483 -13917070 - AluSx SINE Alu -8 304 1 21 0 0 0 chr11 136866517 136866538 -13917015 + AT_rich Low_complexity Low_complexity 1 21 0 647 202 6 60 chr11 136868107 136868290 -13915263 + MIR SINE MIR 58 230 -32 231 140 20 40 chr11 136868724 136868774 -13914779 + MSTC LTR MaLR 178 226 -202 676 297 46 39 chr11 136869107 136869641 -13913912 + L1MC/D LINE L1 5114 5642 -758 2592 208 4 28 chr11 136869648 136870186 -13913367 + MLT-int LTR MaLR 138 662 -1073 282 224 0 15 chr11 136870308 136870375 -13913178 + MLT-int LTR MaLR 676 741 -994 1855 186 92 68 chr11 136870462 136870919 -13912634 + MLT1A1-int LTR MaLR 1268 1735 0 1756 196 13 30 chr11 136870919 136871286 -13912267 + MLT1A1 LTR MaLR 1 544 -5 229 241 17 0 chr11 136872347 136872405 -13911148 - MIR SINE MIR -62 146 88 256 213 33 33 chr11 136872408 136872469 -13911084 - 7SK RNA RNA 0 193 133 292 311 37 10 chr11 136873290 136873419 -13910134 + MIR SINE MIR 37 172 -36 1552 123 5 0 chr11 136873678 136873927 -13909626 + AluSg/x SINE Alu 70 310 0 2562 251 42 87 chr11 136874251 136874816 -13908737 - L1M4 LINE L1 -2154 3992 3403 2145 113 3 3 chr11 136874816 136875135 -13908418 + AluSq SINE Alu 1 319 0 2562 251 42 87 chr11 136875135 136875975 -13907578 - L1M4 LINE L1 -2743 3403 2650 1421 239 79 48 chr11 136875975 136876776 -13906777 - L1ME LINE L1 -674 5488 4626 3341 156 51 25 chr11 136876821 136876882 -13906671 - L1MA6 LINE L1 0 6300 6242 809 110 8 0 chr11 136876882 136877009 -13906544 + (TA)n Simple_repeat Simple_repeat 1 128 0 3341 156 51 25 chr11 136877009 136877614 -13905939 - L1MA6 LINE L1 -58 6242 5617 1511 264 52 56 chr11 136877614 136878166 -13905387 + MER68 LTR ERV1 11 560 -2 1042 257 46 3 chr11 136878192 136878495 -13905058 - L1ME LINE L1 -1794 4352 4037 228 254 90 40 chr11 136878839 136879040 -13904513 + L1MC5 LINE L1 7644 7854 -107 26 0 0 0 chr11 136879055 136879081 -13904472 + AT_rich Low_complexity Low_complexity 1 26 0 1088 187 134 65 chr11 136879420 136879741 -13903812 - MLT1G LTR MaLR 0 590 248 229 245 0 0 chr11 136879807 136879860 -13903693 - MLT1G LTR MaLR -506 84 32 207 0 0 0 chr11 136879979 136880002 -13903551 + (TC)n Simple_repeat Simple_repeat 2 24 0 242 342 77 66 chr11 136880045 136880632 -13902921 + L2 LINE L2 2146 2738 -576 270 333 7 29 chr11 136880800 136880938 -13902615 + L2 LINE L2 2919 3053 -219 194 218 0 36 chr11 136881147 136881202 -13902351 - L2 LINE L2 0 3313 3261 2282 113 0 0 chr11 136881690 136881992 -13901561 - AluSx SINE Alu -10 302 1 22 35 0 0 chr11 136882531 136882560 -13900993 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr11 136883099 136883137 -13900416 + AT_rich Low_complexity Low_complexity 1 38 0 2294 118 0 0 chr11 136884175 136884481 -13899072 - AluSc SINE Alu -3 306 1 217 315 14 0 chr11 136885127 136885200 -13898353 + CT-rich Low_complexity Low_complexity 3 76 0 449 207 0 0 chr11 136885406 136885493 -13898060 - MLT1C LTR MaLR -9 458 372 2138 89 0 4 chr11 136885593 136885863 -13897690 - AluSg SINE Alu -41 269 1 369 325 76 13 chr11 136887453 136887610 -13895943 + MIR SINE MIR 26 192 -70 22 0 0 0 chr11 136889277 136889299 -13894254 + AT_rich Low_complexity Low_complexity 1 22 0 895 246 19 0 chr11 136890237 136890448 -13893105 + MER20 DNA MER1_type 3 217 -2 315 345 0 62 chr11 136891552 136891697 -13891856 + MIR3 SINE MIR 30 165 -43 356 292 164 10 chr11 136891867 136892062 -13891491 + MIR SINE MIR 37 261 -1 265 271 52 0 chr11 136892338 136892434 -13891119 + MER103 DNA DNA 65 165 -1 223 280 0 133 chr11 136893535 136893678 -13889875 - MIR SINE MIR -74 188 65 784 274 81 62 chr11 136894217 136895288 -13888265 + L1MEd LINE L1 587 1697 -4613 191 100 0 25 chr11 136895961 136896001 -13887552 + (CA)n Simple_repeat Simple_repeat 1 39 0 186 103 0 0 chr11 136897453 136897482 -13886071 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 264 368 31 16 chr11 136897798 136897991 -13885562 - MIR SINE MIR -46 216 21 221 297 36 27 chr11 136898795 136898906 -13884647 + MIR SINE MIR 79 190 -72 284 291 19 10 chr11 136900721 136900824 -13882729 + MER5A DNA MER1_type 1 104 -85 1638 55 5 0 chr11 136903799 136904001 -13879552 - MLT2A1 LTR ERVL -241 203 1 31101 75 9 1 chr11 136904001 136909604 -13873949 - HERVL-A1-A1 LTR ERVL 0 5654 1 3159 100 11 2 chr11 136909604 136910044 -13873509 - MLT2A1 LTR ERVL 0 444 1 3453 131 21 7 chr11 136910049 136910606 -13872947 - L1M1 LINE L1 -4217 3348 2784 6736 179 17 3 chr11 136910628 136911743 -13871810 - L1M1 LINE L1 -6425 1140 10 3889 263 45 25 chr11 136911853 136913825 -13869728 + L1MEd LINE L1 1772 3799 -2330 309 172 149 0 chr11 136913951 136914038 -13869515 + L1MEd LINE L1 3808 3907 -2222 15859 95 25 5 chr11 136914066 136917202 -13866351 - L1PA7 LINE L1 -7 6147 2965 1483 185 30 3 chr11 136917202 136917500 -13866053 + L1MB3 LINE L1 5877 6182 -1 458 345 65 0 chr11 136917507 136917739 -13865814 - L2 LINE L2 -2033 1281 1035 376 215 41 126 chr11 136918335 136918874 -13864679 + L1ME LINE L1 2787 3279 -2867 2235 202 49 9 chr11 136918880 136919391 -13864162 - MER44D DNA MER2_type 0 605 2 33 73 0 0 chr11 136920038 136920106 -13863447 + AT_rich Low_complexity Low_complexity 1 68 0 228 94 57 38 chr11 136920111 136920164 -13863389 + L1MC4 LINE L1 6652 6705 -1337 378 316 98 30 chr11 136920180 136920708 -13862845 + L1ME LINE L1 3425 3988 -2158 1956 290 147 17 chr11 136920738 136921675 -13861878 + L2 LINE L2 1531 2589 -725 367 258 118 32 chr11 136921678 136921864 -13861689 + L2 LINE L2 2949 3150 -163 328 275 11 11 chr11 136921865 136921956 -13861597 + MER39 LTR ERV1 1 91 -616 1136 181 149 14 chr11 136922059 136922335 -13861218 + MER39 LTR ERV1 395 707 0 219 277 9 54 chr11 136922341 136922453 -13861100 + L2 LINE L2 3152 3258 -55 227 301 58 0 chr11 136922479 136922582 -13860971 + L1ME LINE L1 4735 4843 -1303 1966 168 0 0 chr11 136922674 136922978 -13860575 + AluJo SINE Alu 3 306 -6 250 306 156 5 chr11 136923149 136923348 -13860205 + L1ME LINE L1 5565 5793 -377 25 65 0 0 chr11 136923365 136923411 -13860142 + AT_rich Low_complexity Low_complexity 1 46 0 574 273 65 93 chr11 136923565 136924008 -13859545 - MLT1H LTR MaLR 0 549 119 368 329 75 13 chr11 136924624 136924852 -13858701 - L3b LINE CR1 -83 1500 1259 280 256 95 16 chr11 136925112 136925265 -13858288 + MIR SINE MIR 3 165 -69 25 65 0 0 chr11 136925492 136925538 -13858015 + AT_rich Low_complexity Low_complexity 1 46 0 225 330 103 10 chr11 136925585 136925682 -13857871 - L2 LINE L2 -25 3247 3142 496 334 112 14 chr11 136926154 136926519 -13857034 - L2 LINE L2 -2657 657 257 435 276 157 44 chr11 136928670 136928964 -13854589 - LTR16A LTR ERVL -44 406 80 2343 183 8 46 chr11 136929710 136930235 -13853318 + MLT1D LTR MaLR 1 505 0 376 273 0 0 chr11 136933531 136933630 -13849923 - MIR SINE MIR -11 251 153 2073 121 0 23 chr11 136933817 136934124 -13849429 - AluSg SINE Alu -10 300 1 279 324 57 0 chr11 136934151 136934256 -13849297 + L2 LINE L2 3162 3272 0 191 239 0 22 chr11 136935042 136935088 -13848465 + MIR SINE MIR 101 145 -63 619 259 18 6 chr11 136935271 136935437 -13848116 - LTR33 LTR ERVL -1 520 353 789 335 43 3 chr11 136935555 136935883 -13847670 - LTR33 LTR ERVL -176 345 5 1639 171 4 11 chr11 136936104 136936379 -13847174 - AluJo SINE Alu 0 312 40 24 0 0 0 chr11 136937851 136937875 -13845678 + GC_rich Low_complexity Low_complexity 1 24 0 566 237 41 12 chr11 136939359 136939528 -13844025 - MER104 DNA MER2_type -3 177 4 245 269 166 13 chr11 136939562 136939719 -13843834 + MIR SINE MIR 21 196 -62 246 266 81 8 chr11 136939908 136940032 -13843521 - L2 LINE L2 -798 2516 2384 403 363 51 40 chr11 136940393 136940746 -13842807 + L2 LINE L2 2916 3272 0 347 298 66 33 chr11 136943112 136943293 -13840260 - MIR3 SINE MIR -7 201 15 237 159 0 0 chr11 136944354 136944398 -13839155 + (CA)n Simple_repeat Simple_repeat 2 45 0 183 256 0 0 chr11 136953472 136953515 -13830038 + L2 LINE L2 3228 3270 -2 244 203 16 16 chr11 136953828 136953892 -13829661 - MIR SINE MIR -109 153 90 210 231 19 0 chr11 136954449 136954501 -13829052 + C-rich Low_complexity Low_complexity 5 57 0 208 250 105 16 chr11 136956849 136956973 -13826580 - L3b LINE CR1 -195 1388 1254 368 163 25 0 chr11 136957218 136957298 -13826255 + GA-rich Low_complexity Low_complexity 3 84 0 43353 37 24 3 chr11 136958902 136964930 -13818623 - L1PA4 LINE L1 0 6155 1 8130 64 9 6 chr11 136964919 136965954 -13817599 - L1P LINE L1 -5104 1042 5 * 243 362 16 22 chr11 136966706 136966891 -13816662 - MIR SINE MIR -31 231 48 236 236 11 0 chr11 136970192 136970281 -13813272 + CT-rich Low_complexity Low_complexity 1 90 0 213 189 0 0 chr11 136973640 136973677 -13809876 + MIR SINE MIR 108 144 -118 23 0 0 0 chr11 136973723 136973746 -13809807 + AT_rich Low_complexity Low_complexity 1 23 0 2057 118 0 0 chr11 136975016 136975296 -13808257 - AluSq SINE Alu -12 301 22 289 174 93 70 chr11 136978429 136978515 -13805038 + MER94 DNA DNA 25 112 -22 233 269 0 0 chr11 136978589 136978641 -13804912 + (CA)n Simple_repeat Simple_repeat 2 53 0 219 114 0 0 chr11 136978946 136978981 -13804572 + (CAA)n Simple_repeat Simple_repeat 2 36 0 289 265 48 0 chr11 136981258 136981341 -13802212 + MIR SINE MIR 94 180 -82 1588 196 73 44 chr11 136981611 136982065 -13801488 + MLT1C LTR MaLR 1 467 0 266 368 98 0 chr11 136982235 136982368 -13801185 + MER5A DNA MER1_type 44 189 0 220 284 198 17 chr11 136982368 136982484 -13801069 - MIR3 SINE MIR -48 160 24 205 167 185 93 chr11 136983443 136983551 -13800002 - L3 LINE CR1 -1 1576 1459 2598 98 14 8 chr11 136983841 136984208 -13799345 + THE1C LTR MaLR 7 375 0 437 243 110 0 chr11 136984821 136984966 -13798587 + MIR SINE MIR 102 261 -1 206 105 26 0 chr11 136985313 136985351 -13798202 + (TA)n Simple_repeat Simple_repeat 1 39 0 2296 88 0 3 chr11 136985924 136986233 -13797320 - AluY SINE Alu 0 308 1 27 0 0 0 chr11 136986904 136986931 -13796622 + AT_rich Low_complexity Low_complexity 1 27 0 2391 132 3 0 chr11 136988420 136988777 -13794776 - MER46B DNA MER2_type 0 236 4 988 79 13 0 chr11 136989551 136989703 -13793850 + (TGGA)n Simple_repeat Simple_repeat 1 154 0 430 228 203 0 chr11 136990755 136990878 -13792675 + MER5A DNA MER1_type 26 173 -16 240 255 65 42 chr11 136992478 136992651 -13790902 - MLT1G LTR MaLR 0 556 386 295 299 41 32 chr11 136992738 136992934 -13790619 - MLT1G LTR MaLR -392 198 1 598 254 54 27 chr11 136993330 136993515 -13790038 + MIR SINE MIR 68 257 -5 399 21 0 0 chr11 136993632 136993680 -13789873 + (TG)n Simple_repeat Simple_repeat 1 48 0 270 164 0 0 chr11 136994284 136994339 -13789214 + (CA)n Simple_repeat Simple_repeat 2 56 0 1167 208 68 18 chr11 136995906 136996185 -13787368 - MER58B DNA MER1_type 0 341 49 1867 129 0 15 chr11 136996261 136996525 -13787028 - AluSx SINE Alu -49 263 4 411 269 62 0 chr11 136997007 136997137 -13786416 - MIR SINE MIR -108 154 17 1380 152 80 27 chr11 136998653 136998916 -13784637 - AluJo SINE Alu -30 282 6 326 329 26 7 chr11 136998921 136999073 -13784480 - MIR SINE MIR -19 243 89 399 281 49 49 chr11 136999216 136999380 -13784173 + MIR SINE MIR 48 211 -51 508 301 38 30 chr11 137000266 137000502 -13783051 + MIR SINE MIR 1 238 -24 738 305 178 28 chr11 137002156 137002993 -13780560 + L2 LINE L2 1694 2656 -658 1249 42 24 0 chr11 137003056 137003222 -13780331 + L1P LINE L1 5254 5423 -749 9370 33 5 3 chr11 137003322 137005302 -13778251 + L1PA4 LINE L1 4173 6155 0 3623 193 13 28 chr11 137005294 137006041 -13777512 + L1 LINE L1 3510 4245 -1901 * 28529 47 41 16 chr11 137006141 137009823 -13773730 - L1P LINE L1 -2373 3773 1 269 328 50 35 chr11 137010459 137010660 -13772893 - MIR SINE MIR -12 250 47 183 216 176 0 chr11 137011651 137011725 -13771828 + MIR3 SINE MIR 89 175 -33 5622 35 0 0 chr11 137011994 137012620 -13770933 - L1PA4 LINE L1 -3 6152 5527 604 183 0 0 chr11 137012815 137012919 -13770634 - MIR SINE MIR -78 184 81 1717 178 51 66 chr11 137013078 137013472 -13770081 - MLT1B LTR MaLR -2 388 1 1685 184 3 0 chr11 137015010 137015292 -13768261 - AluJo SINE Alu -21 291 9 341 262 127 16 chr11 137016511 137016637 -13766916 - L2 LINE L2 -7 3306 3167 343 272 0 0 chr11 137017097 137017178 -13766375 + MLT1F LTR MaLR 1 81 -461 1014 215 151 18 chr11 137017216 137017500 -13766053 + MLT1F LTR MaLR 219 540 -2 638 358 78 21 chr11 137017609 137018031 -13765522 + L2 LINE L2 1802 2247 -1067 634 255 69 0 chr11 137018030 137018175 -13765378 + MIR SINE MIR 7 161 -101 * 892 317 50 53 chr11 137018309 137018873 -13764680 + L2 LINE L2 2291 2852 -462 633 187 9 0 chr11 137018875 137019205 -13764348 + (CA)n Simple_repeat Simple_repeat 1 333 0 273 29 0 0 chr11 137019451 137019485 -13764068 + (T)n Simple_repeat Simple_repeat 1 34 0 231 114 0 0 chr11 137019686 137019721 -13763832 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 251 263 17 93 chr11 137020610 137020656 -13762897 - MER94 DNA DNA -19 115 67 1849 136 3 45 chr11 137020656 137020964 -13762589 - AluSx SINE Alu -17 295 1 251 263 17 93 chr11 137020964 137021035 -13762518 - MER94 DNA DNA -67 67 7 411 355 41 17 chr11 137022119 137022291 -13761262 + MIR3 SINE MIR 22 197 -11 506 306 38 6 chr11 137023038 137023198 -13760355 + MIR3 SINE MIR 18 182 -26 273 331 16 16 chr11 137024152 137024273 -13759280 + MIR3 SINE MIR 75 195 -13 219 114 0 0 chr11 137024325 137024360 -13759193 + (TG)n Simple_repeat Simple_repeat 2 36 0 773 162 0 11 chr11 137025831 137026010 -13757543 + CT-rich Low_complexity Low_complexity 2 178 0 244 267 33 50 chr11 137026319 137026439 -13757114 + LTR33 LTR ERVL 402 519 -2 635 215 256 0 chr11 137026529 137026701 -13756852 + MER20 DNA MER1_type 1 216 -3 198 345 27 27 chr11 137026737 137026847 -13756706 + L2 LINE L2 3184 3293 -20 342 0 0 0 chr11 137029116 137029154 -13754399 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 219 281 0 35 chr11 137029175 137029232 -13754321 - L2 LINE L2 -84 3188 3134 237 244 89 33 chr11 137029802 137029892 -13753661 - L3b LINE CR1 -199 1384 1290 330 353 72 44 chr11 137030198 137030603 -13752950 - L2 LINE L2 0 3272 2857 308 274 167 18 chr11 137030783 137030951 -13752602 - L2 LINE L2 0 3313 3121 558 261 93 43 chr11 137031203 137031483 -13752070 - L2 LINE L2 -5 3308 3015 2109 210 61 16 chr11 137031855 137032411 -13751142 - Charlie1a DNA MER1_type 0 1455 875 1221 204 15 96 chr11 137032405 137032738 -13750815 + MLT2B1 LTR ERVL 141 446 -74 * 461 173 14 14 chr11 137032764 137032903 -13750650 + (TA)n Simple_repeat Simple_repeat 1 139 0 252 59 0 0 chr11 137032898 137032932 -13750621 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 316 95 0 0 chr11 137032932 137032974 -13750579 + MLT2B1 LTR ERVL 423 464 0 3226 234 37 44 chr11 137032980 137033846 -13749707 - Charlie1a DNA MER1_type -595 860 1 2966 206 84 69 chr11 137034458 137034995 -13748558 + MER21B LTR ERV1 10 566 -297 2900 111 0 5 chr11 137034995 137035372 -13748181 - THE1C LTR MaLR 0 375 1 2966 206 84 69 chr11 137035372 137035664 -13747889 + MER21B LTR ERV1 566 852 -11 377 279 162 19 chr11 137036760 137036914 -13746639 + MER5A DNA MER1_type 14 189 0 212 263 35 97 chr11 137037067 137037181 -13746372 - MER5A DNA MER1_type 0 189 83 425 213 91 46 chr11 137037224 137037404 -13746149 + MIR SINE MIR 33 218 -44 739 290 63 92 chr11 137037415 137037904 -13745649 + L2 LINE L2 2839 3313 0 345 296 129 27 chr11 137038416 137038938 -13744615 - L1ME4a LINE L1 -296 5825 5265 1843 45 60 41 chr11 137039560 137039828 -13743725 + AluY SINE Alu 1 273 -38 26209 35 7 0 chr11 137039928 137043707 -13739846 + L1PA4 LINE L1 2371 6155 0 6518 173 18 47 chr11 137043715 137045086 -13738467 + L1 LINE L1 3526 4855 -1291 1888 131 6 45 chr11 137045086 137045399 -13738154 - AluSx SINE Alu -11 301 1 2284 211 48 38 chr11 137045400 137046152 -13737401 - L1M4c LINE L1 -4545 2020 1041 233 250 0 18 chr11 137046167 137046223 -13737330 - L1M4c LINE L1 -5841 701 647 297 261 56 57 chr11 137046626 137046870 -13736683 - L1M4c LINE L1 -6255 391 1 183 254 91 0 chr11 137046870 137046925 -13736628 + L2 LINE L2 1295 1354 -1960 307 246 0 0 chr11 137046946 137047003 -13736550 - MER5C DNA MER1_type -267 57 1 1825 200 31 17 chr11 137047050 137047410 -13736143 + MLT1A1 LTR MaLR 1 365 0 426 294 42 0 chr11 137047420 137047563 -13735990 + HERVL LTR ERVL 2910 3058 -2596 262 24 71 0 chr11 137047567 137047609 -13735944 + T-rich Low_complexity Low_complexity 2 46 0 486 326 106 9 chr11 137047617 137047844 -13735709 + HERVL LTR ERVL 3136 3384 -2380 393 379 30 0 chr11 137048483 137048715 -13734838 + HERVL LTR ERVL 3784 4022 -1632 1249 324 77 31 chr11 137049020 137049771 -13733782 + HERVL LTR ERVL 4441 5226 -538 1513 302 99 48 chr11 137050709 137051067 -13732486 + L2 LINE L2 1486 1824 -1490 2268 119 0 0 chr11 137051067 137051369 -13732184 + AluSq SINE Alu 2 303 -10 1513 302 99 48 chr11 137051369 137052066 -13731487 + L2 LINE L2 1824 2595 -719 655 269 57 20 chr11 137052085 137052427 -13731126 + L2 LINE L2 2884 3311 -2 363 321 33 61 chr11 137052521 137052733 -13730820 - L1MEd LINE L1 -5319 800 595 1271 241 57 32 chr11 137053423 137053826 -13729727 - MLT1D LTR MaLR -17 488 76 210 262 134 54 chr11 137055532 137055681 -13727872 + L2 LINE L2 3081 3241 -31 500 289 64 40 chr11 137055741 137055990 -13727563 - MIR SINE MIR -6 256 2 253 346 73 22 chr11 137056717 137056853 -13726700 + MIR3 SINE MIR 3 145 -63 207 0 0 0 chr11 137057183 137057206 -13726347 + (CA)n Simple_repeat Simple_repeat 2 24 0 231 114 0 0 chr11 137057679 137057714 -13725839 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 1495 185 55 0 chr11 137059136 137059428 -13724125 - AluJo SINE Alu -4 308 1 209 33 33 0 chr11 137060233 137060263 -13723290 + (TG)n Simple_repeat Simple_repeat 2 32 0 181 268 110 49 chr11 137060299 137060381 -13723172 + L2 LINE L2 3162 3248 -24 504 105 0 0 chr11 137060449 137060525 -13723028 + (TC)n Simple_repeat Simple_repeat 1 76 0 1601 163 20 10 chr11 137060525 137060820 -13722733 - AluSq SINE Alu -15 298 1 189 290 70 20 chr11 137061046 137061146 -13722407 + MIR SINE MIR 38 142 -66 335 300 114 7 chr11 137061551 137061691 -13721862 - L2 LINE L2 0 3313 3159 293 355 2 46 chr11 137063768 137063946 -13719607 - MIR SINE MIR -51 157 9 231 333 109 41 chr11 137064713 137065453 -13718100 + L2 LINE L2 2292 3099 -173 347 324 29 70 chr11 137065854 137066095 -13717458 - MIR SINE MIR -7 255 25 296 226 62 48 chr11 137068268 137068373 -13715180 - MIR SINE MIR -70 138 59 180 111 0 0 chr11 137068941 137068968 -13714585 + (GA)n Simple_repeat Simple_repeat 1 27 0 189 74 0 0 chr11 137072158 137072185 -13711368 + (TATG)n Simple_repeat Simple_repeat 2 28 0 294 291 9 9 chr11 137073379 137073489 -13710064 + (TAGA)n Simple_repeat Simple_repeat 1 110 0 253 213 40 0 chr11 137074154 137074229 -13709324 + A-rich Low_complexity Low_complexity 4 81 0 25 51 0 0 chr11 137076053 137076092 -13707461 + AT_rich Low_complexity Low_complexity 1 39 0 200 57 0 57 chr11 137076227 137076262 -13707291 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 740 306 37 16 chr11 137076675 137076920 -13706633 - MIR SINE MIR -1 261 12 235 282 10 68 chr11 137077039 137077142 -13706411 + MIR3 SINE MIR 89 185 -23 2258 85 0 0 chr11 137078246 137078540 -13705013 - AluY SINE Alu -17 294 1 182 393 0 0 chr11 137078751 137078812 -13704741 + MIR SINE MIR 47 107 -101 241 310 177 0 chr11 137079230 137079343 -13704210 - L2 LINE L2 -2 3270 3138 186 133 0 0 chr11 137079362 137079392 -13704161 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 442 289 67 33 chr11 137079484 137079664 -13703889 + MIR SINE MIR 11 196 -66 253 132 0 0 chr11 137080531 137080569 -13702984 + MADE1 DNA Mariner 2 39 -41 1830 137 28 0 chr11 137080569 137080853 -13702700 - AluSx SINE Alu -20 292 1 189 133 0 0 chr11 137082475 137082505 -13701048 - L2 LINE L2 0 3272 3243 200 338 0 14 chr11 137082876 137082947 -13700606 + MIR SINE MIR 110 179 -83 292 243 27 14 chr11 137083064 137083138 -13700415 + L2 LINE L2 3229 3303 -10 504 32 0 0 chr11 137083141 137083203 -13700350 + (TGGA)n Simple_repeat Simple_repeat 3 64 0 232 285 167 46 chr11 137083355 137083636 -13699917 - L2 LINE L2 -557 2757 2443 201 304 228 0 chr11 137083695 137083787 -13699766 - L2 LINE L2 -978 2336 2224 430 331 33 7 chr11 137083796 137083947 -13699606 - MER5A DNA MER1_type 0 189 35 212 305 177 49 chr11 137085380 137085544 -13698009 - MIR3 SINE MIR -23 185 1 450 307 109 28 chr11 137086191 137086422 -13697131 + MIR SINE MIR 15 262 0 238 265 82 68 chr11 137086522 137086669 -13696884 - MIR3 SINE MIR -1 207 59 383 341 94 0 chr11 137086765 137086903 -13696650 - L2 LINE L2 0 3272 3122 464 308 8 0 chr11 137086935 137087055 -13696498 + L2 LINE L2 3190 3310 -3 216 351 32 0 chr11 137087558 137087652 -13695901 - MIR SINE MIR -70 192 96 1299 215 58 71 chr11 137087690 137088085 -13695468 + MLT1B LTR MaLR 1 390 0 277 299 92 1 chr11 137088652 137088756 -13694797 + MIR SINE MIR 70 190 -18 207 186 0 0 chr11 137090908 137090951 -13692602 + (CA)n Simple_repeat Simple_repeat 2 44 0 188 157 196 0 chr11 137094349 137094400 -13689153 + MIR SINE MIR 134 194 -68 371 287 0 0 chr11 137094478 137094579 -13688974 - MER5A DNA MER1_type -80 109 9 254 262 0 36 chr11 137095130 137095214 -13688339 + GA-rich Low_complexity Low_complexity 3 83 0 2730 7 0 3 chr11 137095282 137095591 -13687962 - AluYa5 SINE Alu -3 308 1 180 388 86 0 chr11 137096580 137096696 -13686857 - L3 LINE CR1 -11 1566 1441 2083 130 62 0 chr11 137096711 137097049 -13686504 + THE1B LTR MaLR 2 360 -4 441 293 43 24 chr11 137099686 137099850 -13683703 - MER5B DNA MER1_type -5 173 7 22 0 0 0 chr11 137100348 137100370 -13683183 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr11 137100374 137100397 -13683156 + (A)n Simple_repeat Simple_repeat 1 23 0 35438 45 2 0 chr11 137100399 137106563 -13676990 + L1PA3 LINE L1 1 6174 0 212 0 36 0 chr11 137106817 137106845 -13676708 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2061 234 35 53 chr11 137106845 137107564 -13675989 - L1ME2 LINE L1 -11 6153 5448 277 277 109 0 chr11 137107946 137108083 -13675470 - MER103 DNA DNA -2 164 13 309 130 13 39 chr11 137108096 137108173 -13675380 + CT-rich Low_complexity Low_complexity 2 76 0 196 311 68 39 chr11 137109061 137109164 -13674389 + L2 LINE L2 2966 3071 -201 1721 129 214 72 chr11 137109735 137110206 -13673347 - Tigger3b DNA MER2_type -9 1223 686 2599 179 25 12 chr11 137110699 137111213 -13672340 - Tigger3b DNA MER2_type -673 558 38 212 0 36 0 chr11 137111213 137111241 -13672312 + (TTA)n Simple_repeat Simple_repeat 3 31 0 3436 74 0 0 chr11 137111241 137111688 -13671865 - L1PA8 LINE L1 -18 6154 5708 1461 298 98 17 chr11 137111850 137112117 -13671436 + L2 LINE L2 2010 2254 -1059 2094 70 29 4 chr11 137112117 137112389 -13671164 + AluY SINE Alu 31 309 -2 1461 298 98 17 chr11 137112389 137113212 -13670341 + L2 LINE L2 2254 3180 -133 467 321 0 0 chr11 137113201 137113332 -13670221 - L2 LINE L2 0 3272 3142 * 189 0 0 0 chr11 137113478 137113499 -13670054 + (T)n Simple_repeat Simple_repeat 1 21 0 1437 262 164 16 chr11 137113582 137114049 -13669504 - L2 LINE L2 -355 2959 2362 297 75 0 0 chr11 137114049 137114089 -13669464 + (TTG)n Simple_repeat Simple_repeat 2 41 0 1437 262 164 16 chr11 137114089 137114292 -13669261 - L2 LINE L2 -952 2362 2190 428 143 183 48 chr11 137114291 137114417 -13669136 + L2 LINE L2 3171 3313 0 * 196 321 0 0 chr11 137114435 137114488 -13669065 + L2 LINE L2 3261 3313 0 287 242 0 0 chr11 137114496 137114562 -13668991 + L2 LINE L2 3246 3311 -2 2133 106 0 20 chr11 137117157 137117460 -13666093 + AluY SINE Alu 1 297 -14 199 322 44 11 chr11 137118499 137118589 -13664964 - MIR3 SINE MIR -3 205 113 241 331 38 19 chr11 137119775 137119932 -13663621 + L2 LINE L2 2218 2377 -937 397 340 41 0 chr11 137120033 137120180 -13663373 - L2 LINE L2 -1 3312 3160 799 127 11 22 chr11 137120360 137120541 -13663012 + (TG)n Simple_repeat Simple_repeat 2 180 0 680 172 6 0 chr11 137120568 137120737 -13662816 + (TG)n Simple_repeat Simple_repeat 1 170 0 633 166 18 0 chr11 137120758 137120927 -13662626 + (TG)n Simple_repeat Simple_repeat 2 173 0 1829 114 13 36 chr11 137121736 137122042 -13661511 + AluY SINE Alu 1 299 -12 2695 95 8 13 chr11 137123166 137123554 -13659999 + L1PA11 LINE L1 5789 6174 0 566 322 56 38 chr11 137123559 137123928 -13659625 - L2 LINE L2 -176 3137 2765 22 0 0 0 chr11 137124005 137124027 -13659526 + AT_rich Low_complexity Low_complexity 1 22 0 564 302 22 6 chr11 137125703 137125885 -13657668 + MIR SINE MIR 15 199 -63 181 265 20 20 chr11 137126416 137126465 -13657088 - MER5A DNA MER1_type -84 105 57 4492 54 40 0 chr11 137126690 137127265 -13656288 - L1PA8 LINE L1 -5 6167 5570 1592 102 0 4 chr11 137127265 137127511 -13656042 + L1P LINE L1 4901 5145 -1001 287 267 94 52 chr11 137128995 137129186 -13654367 - MIR SINE MIR -1 261 63 412 296 65 25 chr11 137129780 137129979 -13653574 + L1M4 LINE L1 4023 4229 -1917 1079 228 71 80 chr11 137130481 137131017 -13652536 - MLT1F LTR MaLR -1 541 11 436 191 9 38 chr11 137131439 137131544 -13652009 + L1MB3 LINE L1 6081 6182 -1 367 327 104 43 chr11 137131871 137132293 -13651260 + HAL1b LINE L1 67 514 -834 257 329 12 12 chr11 137132359 137132444 -13651109 + L2 LINE L2 3187 3271 -1 22 35 0 0 chr11 137133223 137133252 -13650301 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr11 137133807 137133833 -13649720 + AT_rich Low_complexity Low_complexity 1 26 0 324 343 71 34 chr11 137133981 137134278 -13649275 + L1M4 LINE L1 3821 4128 -2018 3469 238 103 26 chr11 137134294 137134633 -13648920 + L1ME1 LINE L1 3580 3891 -2273 2607 71 20 6 chr11 137134633 137134983 -13648570 + THE1A LTR MaLR 1 355 0 11244 107 7 3 chr11 137134983 137136556 -13646997 + THE1A-int LTR MaLR 1 1579 -1 2399 90 32 9 chr11 137136557 137136902 -13646651 + THE1A LTR MaLR 1 353 -2 3469 238 103 26 chr11 137136902 137138725 -13644828 + L1ME1 LINE L1 3890 5916 -248 270 220 37 18 chr11 137138775 137138884 -13644669 + (TA)n Simple_repeat Simple_repeat 1 111 0 511 287 32 21 chr11 137138884 137139072 -13644481 + L1ME1 LINE L1 5919 6108 -58 373 328 44 97 chr11 137139760 137140102 -13643451 + L2 LINE L2 2948 3271 -1 283 260 0 13 chr11 137143297 137143374 -13640179 - MLT1K LTR MaLR -4 584 509 269 328 75 95 chr11 137144120 137144197 -13639356 + L2 LINE L2 2725 2802 -470 2362 94 9 0 chr11 137144197 137144528 -13639025 - L1PA8 LINE L1 -15 6157 5824 269 328 75 95 chr11 137144528 137144944 -13638609 + L2 LINE L2 2802 3203 -69 231 305 68 34 chr11 137146393 137146511 -13637042 + MIR SINE MIR 21 142 -66 329 231 68 0 chr11 137146671 137146788 -13636765 - L1MD2 LINE L1 -1 6358 6234 267 31 0 0 chr11 137146796 137146828 -13636725 + (TG)n Simple_repeat Simple_repeat 1 32 0 3427 80 23 20 chr11 137146866 137147558 -13635995 - L1PA8 LINE L1 -385 5787 5096 2382 74 109 0 chr11 137147558 137147897 -13635656 + L1PA8 LINE L1 5788 6163 -9 28 0 0 0 chr11 137147897 137147925 -13635628 + AT_rich Low_complexity Low_complexity 1 28 0 1533 233 98 7 chr11 137147950 137148401 -13635152 - L1MD2 LINE L1 -175 6184 5693 259 343 29 0 chr11 137148479 137148584 -13634969 + MIR SINE MIR 136 243 -19 259 384 74 11 chr11 137148715 137148905 -13634648 - MIR SINE MIR -54 208 7 1587 144 114 0 chr11 137149066 137149329 -13634224 - AluSq SINE Alu -20 293 1 238 171 0 0 chr11 137151065 137151106 -13632447 - MER63 DNA MER1_type -332 730 690 1061 40 0 0 chr11 137151821 137151946 -13631607 - L1PA7 LINE L1 0 6154 6030 357 24 0 0 chr11 137151946 137151988 -13631565 + U6 snRNA snRNA 27 68 -39 2799 253 51 18 chr11 137152864 137153788 -13629765 - L1ME2 LINE L1 -8 6156 5205 1981 216 27 2 chr11 137153844 137154246 -13629307 + MLT1C LTR MaLR 27 438 -29 524 288 66 33 chr11 137156020 137156263 -13627290 + MIR SINE MIR 6 256 -6 186 103 0 0 chr11 137156268 137156297 -13627256 + (ATG)n Simple_repeat Simple_repeat 3 31 0 5482 197 15 12 chr11 137156692 137157385 -13626168 - L1 LINE L1 -2629 4936 4247 1824 165 10 0 chr11 137157385 137157676 -13625877 - AluSx SINE Alu -16 296 3 5482 197 15 12 chr11 137157676 137158563 -13624990 - L1 LINE L1 -3318 4247 3351 3613 72 0 0 chr11 137158565 137159009 -13624544 - MLT2A1 LTR ERVL 0 444 1 15079 69 24 1 chr11 137159009 137160907 -13622646 - HERVL-A1 LTR ERVL 0 5654 3713 181 152 0 0 chr11 137161586 137161619 -13621934 + MIR SINE MIR 114 146 -62 309 332 135 43 chr11 137161799 137162353 -13621200 + L2 LINE L2 2154 2758 -556 321 282 54 54 chr11 137162668 137162817 -13620736 + L2 LINE L2 3164 3312 -1 249 57 0 0 chr11 137162972 137163007 -13620546 + (TG)n Simple_repeat Simple_repeat 1 35 0 192 40 0 0 chr11 137163006 137163031 -13620522 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 1334 231 6 43 chr11 137164187 137164537 -13619016 - MER58B DNA MER1_type -3 338 2 1552 322 88 68 chr11 137164593 137166926 -13616627 + L2 LINE L2 200 2579 -735 31 68 0 0 chr11 137166968 137167027 -13616526 + AT_rich Low_complexity Low_complexity 1 59 0 338 184 10 107 chr11 137167829 137167932 -13615621 - MER97c DNA MER1_type? -926 164 72 201 116 23 23 chr11 137168185 137168228 -13615325 + A-rich Low_complexity Low_complexity 4 46 0 637 268 140 45 chr11 137168760 137169222 -13614331 + L1MDb LINE L1 787 1299 -5110 2498 83 0 3 chr11 137169222 137169534 -13614019 + AluSq SINE Alu 3 313 0 637 268 140 45 chr11 137169534 137169557 -13613996 + L1MDb LINE L1 1299 1318 -5091 426 174 22 22 chr11 137173446 137173538 -13610015 + MLT1B LTR MaLR 1 92 -298 942 198 38 0 chr11 137173611 137173823 -13609730 + MLT1B LTR MaLR 53 272 -118 3953 72 2 4 chr11 137173929 137174442 -13609111 + L1PA7 LINE L1 5640 6151 -3 381 308 100 47 chr11 137174618 137175027 -13608526 + L2 LINE L2 2881 3311 -2 364 319 102 59 chr11 137175758 137176438 -13607115 + L2 LINE L2 213 921 -2393 393 271 0 38 chr11 137176457 137176590 -13606963 - L2 LINE L2 0 3313 3186 538 327 95 22 chr11 137176624 137177025 -13606528 + L2 LINE L2 2884 3313 0 337 330 110 20 chr11 137178255 137178455 -13605098 + MIR SINE MIR 18 235 -27 568 205 180 19 chr11 137178466 137178627 -13604926 - MER5A DNA MER1_type 0 189 3 209 336 51 22 chr11 137178786 137178923 -13604630 + MIR SINE MIR 122 262 0 251 319 50 0 chr11 137180361 137180480 -13603073 - MIR SINE MIR -6 256 132 224 163 20 0 chr11 137180609 137180658 -13602895 + (TTATA)n Simple_repeat Simple_repeat 3 52 0 494 57 14 0 chr11 137182691 137182733 -13600820 + (CA)n Simple_repeat Simple_repeat 1 113 0 494 57 14 0 chr11 137182733 137182803 -13600750 + (CA)n Simple_repeat Simple_repeat 2 72 0 243 366 45 0 chr11 137183420 137183532 -13600021 - L2 LINE L2 -1 3271 3155 951 283 74 6 chr11 137186298 137186648 -13596905 + LTR16A LTR ERVL 35 408 -42 461 311 144 4 chr11 137186752 137187016 -13596537 + L2 LINE L2 3008 3308 -5 234 275 22 22 chr11 137188141 137188232 -13595321 + L2 LINE L2 2668 2758 -556 1378 195 27 11 chr11 137188429 137188690 -13594863 - AluJb SINE Alu -14 298 34 183 80 0 0 chr11 137190424 137190449 -13593104 + (CA)n Simple_repeat Simple_repeat 1 25 0 411 351 38 78 chr11 137191783 137192128 -13591425 - L2 LINE L2 0 3272 2942 3503 122 11 35 chr11 137192199 137192738 -13590815 - MER1A DNA MER1_type -1 526 1 215 299 80 58 chr11 137192759 137192896 -13590657 - L2 LINE L2 -6 3266 3127 575 293 16 5 chr11 137193216 137193404 -13590149 + MIR SINE MIR 61 250 -12 24 0 0 0 chr11 137193620 137193644 -13589909 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr11 137194379 137194408 -13589145 + AT_rich Low_complexity Low_complexity 1 29 0 433 346 0 0 chr11 137195713 137195820 -13587733 + MER81 DNA DNA 8 114 0 332 244 12 0 chr11 137195820 137195906 -13587647 - MIR SINE MIR -109 153 67 2218 82 3 41 chr11 137195909 137196226 -13587327 - AluY SINE Alu 0 311 7 197 324 96 29 chr11 137197516 137197652 -13585901 - MIR SINE MIR -32 230 86 234 324 0 15 chr11 137201173 137201241 -13582312 + MIR SINE MIR 15 81 -181 356 217 60 0 chr11 137201257 137201340 -13582213 - L1MB4 LINE L1 -2 6178 6091 1269 215 33 15 chr11 137201344 137201618 -13581935 + AluJo SINE Alu 4 282 -30 5528 42 5 5 chr11 137201705 137202342 -13581211 + L1PA5 LINE L1 5517 6153 -1 407 295 225 7 chr11 137202548 137202850 -13580703 + L2 LINE L2 1908 2275 -1039 14773 226 35 22 chr11 137202891 137204720 -13578833 - L1PA16 LINE L1 -1 6816 5012 2208 137 0 0 chr11 137204720 137205027 -13578526 + AluSx SINE Alu 1 307 -5 14773 226 35 22 chr11 137205027 137205671 -13577882 - L1PA16 LINE L1 -1805 5012 4378 207 0 0 0 chr11 137205671 137205694 -13577859 + (TTG)n Simple_repeat Simple_repeat 2 24 0 14773 226 35 22 chr11 137205694 137208632 -13574921 - L1PA16 LINE L1 -2439 4378 1330 558 323 70 61 chr11 137208827 137209107 -13574446 + L2 LINE L2 2633 2909 -404 2140 123 0 3 chr11 137209107 137209407 -13574146 - AluSg SINE Alu -11 299 1 558 323 70 61 chr11 137209407 137209790 -13573763 + L2 LINE L2 2909 3312 -1 246 255 33 111 chr11 137209875 137210028 -13573525 + L2 LINE L2 3161 3301 -12 309 26 0 0 chr11 137210185 137210223 -13573330 + (TG)n Simple_repeat Simple_repeat 2 39 0 42835 48 4 1 chr11 137211348 137217074 -13566479 + L1PA4 LINE L1 131 5870 -285 201 279 66 59 chr11 137217220 137217356 -13566197 + L2 LINE L2 2622 2758 -556 1009 226 96 66 chr11 137219033 137219479 -13564074 - LTR41 LTR ERVL -12 761 201 320 175 32 0 chr11 137269509 137269572 -13513981 - LTR51 LTR ERV1 -606 65 1 1357 118 19 7 chr11 137270327 137270349 -13513204 - L1M2 LINE L1 -491 5800 5780 1288 200 18 7 chr11 137270349 137270629 -13512924 - L1MA4 LINE L1 -6 6294 6012 1357 118 19 7 chr11 137270629 137270838 -13512715 - L1M2 LINE L1 -511 5780 5571 211 256 0 0 chr11 137271562 137271605 -13511948 - L2 LINE L2 -69 3203 3161 218 394 37 25 chr11 137271753 137271994 -13511559 - L2 LINE L2 -352 2962 2719 573 271 85 14 chr11 137272005 137272241 -13511312 + MIR SINE MIR 2 254 -8 821 321 82 45 chr11 137272287 137272678 -13510875 - L2 LINE L2 -609 2705 2281 2421 84 0 0 chr11 137272678 137272977 -13510576 + AluSc SINE Alu 1 299 -10 821 321 82 45 chr11 137272977 137273192 -13510361 - L2 LINE L2 -1033 2281 2076 286 215 65 54 chr11 137273309 137273402 -13510151 - MIR SINE MIR -76 186 93 731 239 34 0 chr11 137273713 137273889 -13509664 + MER5A DNA MER1_type 1 182 -7 21 0 0 0 chr11 137274940 137274961 -13508592 + AT_rich Low_complexity Low_complexity 1 21 0 196 289 7 86 chr11 137275035 137275187 -13508366 - MER5B DNA MER1_type -19 159 20 362 299 66 0 chr11 137275497 137275634 -13507919 + MIR SINE MIR 66 211 -51 2402 224 35 20 chr11 137275850 137275869 -13507684 - MER89 LTR ERV1 0 559 542 2445 156 28 21 chr11 137275869 137276291 -13507262 - MSTB LTR MaLR 0 426 2 2402 224 35 20 chr11 137276291 137276815 -13506738 - MER89 LTR ERV1 -17 542 8 681 215 23 0 chr11 137277616 137277746 -13505807 - FLAM_A SINE Alu 0 133 1 779 220 28 22 chr11 137277753 137277935 -13505618 - MER5A DNA MER1_type -4 185 3 345 242 21 0 chr11 137278561 137278656 -13504897 - MIR SINE MIR -54 208 112 343 311 28 0 chr11 137280143 137280249 -13503304 + L2 LINE L2 3158 3266 -6 195 300 75 0 chr11 137281584 137281664 -13501889 + MIR SINE MIR 60 145 -63 333 0 0 0 chr11 137281687 137281724 -13501829 + (T)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr11 137281751 137281771 -13501782 + (G)n Simple_repeat Simple_repeat 1 20 0 200 209 0 0 chr11 137282760 137282803 -13500750 + A-rich Low_complexity Low_complexity 2 44 0 1597 185 120 3 chr11 137283110 137283491 -13500062 - LTR51 LTR ERV1 0 671 149 1134 255 106 67 chr11 137283596 137283629 -13499924 - MLT2B1 LTR ERVL -8 512 482 297 109 0 0 chr11 137283629 137283675 -13499878 + (TG)n Simple_repeat Simple_repeat 2 47 0 1134 255 106 67 chr11 137283675 137284131 -13499422 - MLT2B1 LTR ERVL -38 482 4 27 29 0 0 chr11 137284449 137284483 -13499070 + AT_rich Low_complexity Low_complexity 1 34 0 1773 117 4 0 chr11 137285981 137286228 -13497325 + AluSq SINE Alu 1 248 -65 204 40 0 0 chr11 137286349 137286374 -13497179 + (A)n Simple_repeat Simple_repeat 1 25 0 198 322 0 0 chr11 137286540 137286599 -13496954 + MIR SINE MIR 84 142 -120 217 183 17 33 chr11 137287575 137287635 -13495918 + CT-rich Low_complexity Low_complexity 4 62 0 204 178 155 93 chr11 137288470 137288543 -13495010 + MIR SINE MIR 43 110 -152 2442 163 29 7 chr11 137288543 137288960 -13494593 - MSTB LTR MaLR 0 426 1 204 178 155 93 chr11 137288960 137289015 -13494538 + MIR SINE MIR 110 179 -83 1904 142 10 3 chr11 137289102 137289398 -13494155 + AluSx SINE Alu 1 298 -14 201 269 0 0 chr11 137294892 137294970 -13488583 + CT-rich Low_complexity Low_complexity 3 80 0 449 244 17 25 chr11 137295061 137295180 -13488373 + L2 LINE L2 3186 3303 -10 924 84 0 15 chr11 137295976 137296107 -13487446 + AluY SINE Alu 182 310 -1 310 277 54 9 chr11 137297897 137298009 -13485544 + MIR SINE MIR 42 158 -104 726 221 91 82 chr11 137298144 137298279 -13485274 - L1MC4 LINE L1 0 8042 7910 183 80 0 0 chr11 137298279 137298304 -13485249 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 726 221 91 82 chr11 137298304 137298584 -13484969 - L1MC4 LINE L1 -132 7910 7623 866 168 46 20 chr11 137298621 137298817 -13484736 + MLT1A1 LTR MaLR 1 201 -164 2567 242 65 19 chr11 137298818 137299569 -13483984 - L1MC4 LINE L1 -527 7515 6730 475 333 89 0 chr11 137300699 137300912 -13482641 - MIR SINE MIR -19 243 12 425 260 44 84 chr11 137301838 137302065 -13481488 + MIR SINE MIR 9 226 -36 31959 111 8 59 chr11 137302065 137308552 -13475001 + L1PA7 LINE L1 12 6154 0 309 298 36 47 chr11 137309828 137310107 -13473446 + L1MC5 LINE L1 7517 7792 -169 434 147 40 0 chr11 137310175 137310250 -13473303 + MER116 DNA Mariner 1 78 -2 2144 132 59 34 chr11 137310754 137311109 -13472444 - THE1B LTR MaLR 0 364 1 189 102 82 0 chr11 137311722 137311771 -13471782 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 23 33 0 0 chr11 137312028 137312058 -13471495 + AT_rich Low_complexity Low_complexity 1 30 0 363 289 82 7 chr11 137312334 137312469 -13471084 - L2 LINE L2 -659 2655 2511 217 254 0 0 chr11 137313025 137313080 -13470473 + T-rich Low_complexity Low_complexity 1 55 0 643 234 80 21 chr11 137313579 137313767 -13469786 + MIR SINE MIR 14 212 -50 345 121 17 0 chr11 137314480 137314538 -13469015 + Alu SINE Alu 237 295 -7 343 292 212 17 chr11 137314730 137315018 -13468535 + L2 LINE L2 1336 1679 -1635 242 303 40 0 chr11 137315041 137315117 -13468436 - MLT1A2 LTR MaLR -295 79 1 486 136 0 0 chr11 137315184 137315250 -13468303 - AluS SINE Alu -217 96 31 1368 106 17 0 chr11 137315250 137315430 -13468123 + AluSq SINE Alu 101 283 -30 284 24 0 48 chr11 137315437 137315479 -13468074 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1698 274 78 67 chr11 137315504 137316018 -13467535 + L2 LINE L2 1990 2522 -792 1526 210 50 36 chr11 137316018 137316375 -13467178 - MLT1A1 LTR MaLR 0 365 4 1698 274 78 67 chr11 137316375 137316833 -13466720 + L2 LINE L2 2522 2973 -341 365 349 38 0 chr11 137316875 137317007 -13466546 + L2 LINE L2 3134 3270 -2 483 98 12 85 chr11 137317409 137317491 -13466062 + FLAM_A SINE Alu 43 118 -24 548 254 71 50 chr11 137318283 137318489 -13465064 - MIR SINE MIR -52 210 3 187 250 125 14 chr11 137318786 137318858 -13464695 + MIR SINE MIR 34 113 -95 194 0 39 0 chr11 137319013 137319039 -13464514 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 339 85 0 0 chr11 137319720 137319767 -13463786 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 182 212 0 0 chr11 137321100 137321133 -13462420 - MIR SINE MIR -143 119 87 312 183 70 9 chr11 137322478 137322593 -13460960 + (TA)n Simple_repeat Simple_repeat 1 122 0 239 61 0 0 chr11 137322593 137322626 -13460927 - L1PA2 LINE L1 -8 6147 6115 25 31 0 0 chr11 137322626 137322658 -13460895 + AT_rich Low_complexity Low_complexity 1 32 0 1181 241 64 118 chr11 137322691 137323099 -13460454 - MLT1A2 LTR MaLR 0 390 8 2340 95 0 13 chr11 137323271 137323586 -13459967 - AluSp SINE Alu -2 311 1 218 264 88 11 chr11 137323759 137323850 -13459703 - MIR SINE MIR -39 223 126 276 358 55 0 chr11 137324374 137324483 -13459070 + L2 LINE L2 3198 3312 -1 214 301 13 124 chr11 137324923 137325076 -13458477 - L2 LINE L2 -3 3269 3134 780 234 141 103 chr11 137325899 137326432 -13457121 - MER34B LTR ERV1 -5 560 8 1750 264 85 18 chr11 137328376 137328884 -13454669 - MLT1F LTR MaLR 0 542 1 347 301 91 14 chr11 137328884 137329027 -13454526 - MLT1F-int LTR MaLR 0 1371 1218 324 301 5 106 chr11 137329161 137329360 -13454193 - MLT1F-int LTR MaLR -232 1139 961 2339 83 10 0 chr11 137329548 137329837 -13453716 + AluY SINE Alu 1 292 -19 558 321 82 0 chr11 137330170 137330438 -13453115 - MLT1F-int LTR MaLR -774 597 308 1796 268 50 13 chr11 137330608 137331131 -13452422 - MLT1F LTR MaLR 0 542 1 621 326 25 0 chr11 137331181 137331377 -13452176 - MIR SINE MIR -8 254 54 186 327 109 15 chr11 137331655 137331857 -13451696 + L2 LINE L2 1158 1378 -1936 411 339 131 25 chr11 137332462 137333028 -13450525 + L2 LINE L2 1867 2492 -822 673 244 72 5 chr11 137334100 137334293 -13449260 - MER3 DNA MER1_type -1 208 3 1454 96 0 15 chr11 137335127 137335324 -13448229 + AluSg/x SINE Alu 111 304 -5 262 253 0 36 chr11 137336294 137336377 -13447176 + CT-rich Low_complexity Low_complexity 4 83 0 225 309 139 30 chr11 137336427 137336592 -13446961 + MIR SINE MIR 20 202 -60 455 254 79 26 chr11 137336628 137336817 -13446736 - L2 LINE L2 -1 3312 3114 666 243 19 10 chr11 137337611 137337773 -13445780 + MER5B DNA MER1_type 24 178 0 639 288 79 18 chr11 137338038 137338267 -13445286 + MIR SINE MIR 12 254 -8 2162 130 49 26 chr11 137338828 137339175 -13444378 + THE1B LTR MaLR 1 355 -9 10756 89 30 60 chr11 137339175 137339529 -13444024 + THE1B-int LTR MaLR 16 379 -1201 610 60 24 0 chr11 137339529 137339612 -13443941 - Alu SINE Alu -4 306 222 10756 89 30 60 chr11 137339612 137340786 -13442767 + THE1B-int LTR MaLR 379 1579 -1 1080 94 94 0 chr11 137340797 137340957 -13442596 + THE1B LTR MaLR 1 175 -189 350 318 150 30 chr11 137341773 137342006 -13441547 - MIR SINE MIR 0 262 2 2510 82 0 0 chr11 137343080 137343384 -13440169 + AluY SINE Alu 1 304 -7 203 332 77 47 chr11 137343599 137343834 -13439719 + L2 LINE L2 2565 2806 -508 243 0 0 0 chr11 137344207 137344234 -13439319 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr11 137344322 137344343 -13439210 + AT_rich Low_complexity Low_complexity 1 21 0 533 236 78 16 chr11 137346347 137346538 -13437015 + MER69 DNA AcHobo 5 207 -2319 249 327 9 0 chr11 137346823 137346933 -13436620 + MER69 DNA AcHobo 591 701 -525 * 388 194 167 35 chr11 137346924 137347068 -13436485 + MER69 DNA AcHobo 2364 2526 0 630 291 116 9 chr11 137347689 137348136 -13435417 - L1ME4a LINE L1 -4 6117 5623 28 48 0 0 chr11 137348238 137348280 -13435273 + AT_rich Low_complexity Low_complexity 1 42 0 227 238 32 63 chr11 137348303 137348429 -13435124 - L1ME4a LINE L1 -691 5430 5309 798 92 23 0 chr11 137348852 137348982 -13434571 + (TAGA)n Simple_repeat Simple_repeat 1 133 0 347 293 62 58 chr11 137349431 137349518 -13434035 - MIR SINE MIR -53 209 124 1018 226 135 38 chr11 137349518 137349859 -13433694 - MLT1A2 LTR MaLR 0 374 1 347 293 62 58 chr11 137349859 137349979 -13433574 - MIR SINE MIR -138 124 1 326 389 35 0 chr11 137349984 137350097 -13433456 + L2 LINE L2 3156 3272 0 341 345 65 39 chr11 137351223 137351530 -13432023 - L1ME4a LINE L1 -229 5892 5578 291 254 34 42 chr11 137353524 137353642 -13429911 + (CATATA)n Simple_repeat Simple_repeat 2 118 0 183 184 0 0 chr11 137353651 137353689 -13429864 + (CA)n Simple_repeat Simple_repeat 1 38 0 246 342 43 0 chr11 137353742 137353859 -13429694 + MIR SINE MIR 67 188 -74 1842 150 35 41 chr11 137354450 137354764 -13428789 - AluSx SINE Alu 0 312 1 225 260 14 27 chr11 137355187 137355260 -13428293 + MER5B DNA MER1_type 106 177 -1 290 267 12 0 chr11 137355420 137355512 -13428041 + L1MD3 LINE L1 7116 7247 -600 447 231 33 0 chr11 137355529 137355650 -13427903 + MLT1F1 LTR MaLR 1 125 -442 358 159 0 0 chr11 137355650 137355713 -13427840 + L1MC4 LINE L1 7309 7371 -671 1433 187 94 9 chr11 137355721 137356063 -13427490 + L1MD3 LINE L1 7615 7985 -10 269 352 129 47 chr11 137357086 137357552 -13426001 - L3 LINE CR1 -2 1575 1072 228 235 20 0 chr11 137357888 137357939 -13425614 + L2 LINE L2 3251 3302 -11 2147 152 32 46 chr11 137359188 137359229 -13424324 - MSTA LTR MaLR 0 428 388 2274 102 7 0 chr11 137359229 137359522 -13424031 + AluSg SINE Alu 1 295 -15 2147 152 32 46 chr11 137359522 137359716 -13423837 - MSTA LTR MaLR -40 388 199 1750 174 3 7 chr11 137359716 137360026 -13423527 - AluJb SINE Alu -3 309 1 2147 152 32 46 chr11 137360026 137360223 -13423330 - MSTA LTR MaLR -229 199 1 9980 218 88 27 chr11 137361172 137361922 -13421631 + L1MA9 LINE L1 1235 1938 -5334 1835 184 36 6 chr11 137361922 137362259 -13421294 + MER7A DNA MER2_type 2 346 0 9980 218 88 27 chr11 137362259 137363538 -13420015 + L1MA9 LINE L1 1938 3138 -4134 306 0 0 0 chr11 137363538 137363572 -13419981 + (CA)n Simple_repeat Simple_repeat 1 34 0 9980 218 88 27 chr11 137363572 137363941 -13419612 + L1MA9 LINE L1 3138 3483 -3789 2112 139 58 6 chr11 137363941 137364287 -13419266 + THE1B LTR MaLR 1 364 0 9980 218 88 27 chr11 137364287 137367205 -13416348 + L1MA9 LINE L1 3483 6668 -604 1359 191 83 14 chr11 137367205 137367306 -13416247 + AluJb SINE Alu 1 94 -218 509 35 23 23 chr11 137367306 137367392 -13416161 + (TAAA)n Simple_repeat Simple_repeat 3 88 0 1359 191 83 14 chr11 137367392 137367568 -13415985 + AluJb SINE Alu 94 297 -15 9980 218 88 27 chr11 137367568 137368212 -13415341 + L1MA9 LINE L1 6668 7271 -1 237 301 169 5 chr11 137368343 137368562 -13414991 - HAL1 LINE L1 -1048 1459 1205 25 51 0 0 chr11 137368728 137368767 -13414786 + AT_rich Low_complexity Low_complexity 1 39 0 198 0 0 0 chr11 137369213 137369235 -13414318 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 343 186 62 149 chr11 137369489 137369650 -13413903 - HAL1 LINE L1 -2329 178 32 329 260 67 27 chr11 137370582 137370732 -13412821 - MLT1J LTR MaLR -344 167 12 239 324 0 14 chr11 137370749 137370823 -13412730 + L2 LINE L2 3231 3303 -10 2330 97 3 3 chr11 137370838 137371147 -13412406 + AluSc SINE Alu 1 309 0 309 327 199 5 chr11 137371791 137372002 -13411551 + MIR SINE MIR 5 256 -6 207 0 0 0 chr11 137372485 137372508 -13411045 + (T)n Simple_repeat Simple_repeat 1 23 0 331 316 24 48 chr11 137372612 137372780 -13410773 - MIR SINE MIR -66 196 33 1109 87 0 0 chr11 137373457 137373595 -13409958 - AluSg/x SINE Alu -21 291 154 407 253 156 33 chr11 137374087 137374388 -13409165 - MLT1L LTR MaLR -41 574 237 2006 130 49 26 chr11 137376107 137376454 -13407099 + THE1B LTR MaLR 1 355 -9 10022 89 30 60 chr11 137376454 137376808 -13406745 + THE1B-int LTR MaLR 16 379 -1201 573 60 24 0 chr11 137376808 137376891 -13406662 - Alu SINE Alu -4 305 221 10022 89 30 60 chr11 137376891 137378065 -13405488 + THE1B-int LTR MaLR 379 1579 -1 1005 100 94 0 chr11 137378076 137378236 -13405317 + THE1B LTR MaLR 1 175 -189 354 313 150 30 chr11 137379052 137379285 -13404268 - MIR SINE MIR 0 262 2 2475 83 0 0 chr11 137380359 137380659 -13402894 + AluY SINE Alu 1 300 -11 1657 268 84 8 chr11 137381908 137382566 -13400987 + L1ME3 LINE L1 5450 6157 -5 363 343 49 14 chr11 137383639 137383782 -13399771 + MIR3 SINE MIR 16 163 -45 187 309 0 59 chr11 137384820 137384888 -13398665 + L2 LINE L2 3236 3299 -14 303 346 62 37 chr11 137385076 137385400 -13398153 + L2 LINE L2 1859 2190 -1124 393 143 0 6 chr11 137385642 137385760 -13397793 + MER53 DNA DNA 1 187 -2 362 338 101 76 chr11 137386172 137386580 -13396973 + L2 LINE L2 2842 3259 -13 249 297 142 92 chr11 137386787 137387090 -13396463 - L2 LINE L2 0 3272 2955 330 26 0 0 chr11 137387602 137387641 -13395912 + (TC)n Simple_repeat Simple_repeat 2 40 0 205 197 26 0 chr11 137387648 137387724 -13395829 + (TA)n Simple_repeat Simple_repeat 1 78 0 263 393 45 0 chr11 137388189 137388301 -13395252 - L2 LINE L2 -19 3253 3137 1271 177 28 16 chr11 137389203 137389457 -13394096 + MER74A LTR ERVL 17 273 -285 2364 89 40 6 chr11 137389459 137389809 -13393744 + THE1C LTR MaLR 14 375 0 865 268 54 4 chr11 137389822 137390102 -13393451 + MER74B LTR ERVL 329 622 0 296 293 88 23 chr11 137390818 137391033 -13392520 + L1ME LINE L1 5497 5725 -396 1273 114 0 0 chr11 137391067 137391233 -13392320 + AluSc SINE Alu 1 166 -143 225 0 0 0 chr11 137391316 137391341 -13392212 + (TG)n Simple_repeat Simple_repeat 2 26 0 1627 239 42 17 chr11 137391368 137391891 -13391662 + L1ME2 LINE L1 5442 5977 -187 339 267 183 8 chr11 137391963 137392094 -13391459 + L1ME2 LINE L1 6002 6155 -9 267 31 0 0 chr11 137392134 137392166 -13391387 + (TA)n Simple_repeat Simple_repeat 2 33 0 225 94 0 0 chr11 137392221 137392253 -13391300 + (TA)n Simple_repeat Simple_repeat 2 33 0 1506 42 0 21 chr11 137392253 137392443 -13391110 - AluY SINE Alu -16 295 110 216 0 0 0 chr11 137393031 137393055 -13390498 + (T)n Simple_repeat Simple_repeat 1 24 0 331 316 24 48 chr11 137393159 137393327 -13390226 - MIR SINE MIR -66 196 33 1109 87 0 0 chr11 137394002 137394140 -13389413 - AluSg/x SINE Alu -21 291 154 523 253 156 33 chr11 137394632 137394933 -13388620 - MLT1L LTR MaLR -41 574 237 24 0 0 0 chr11 137396933 137396957 -13386596 + AT_rich Low_complexity Low_complexity 1 24 0 201 318 125 0 chr11 137398491 137398579 -13384974 - L2 LINE L2 -14 3258 3160 224 156 0 44 chr11 137398942 137399032 -13384521 + (TA)n Simple_repeat Simple_repeat 2 87 0 2512 185 47 72 chr11 137399183 137399783 -13383770 + LTR8A LTR ERV1 143 727 0 229 252 76 92 chr11 137401353 137401484 -13382069 - L2 LINE L2 -7 3306 3178 318 288 34 51 chr11 137403493 137403611 -13379942 - MIR SINE MIR -88 174 59 1235 140 11 0 chr11 137403893 137404079 -13379474 + AluSg/x SINE Alu 107 294 -18 400 98 20 0 chr11 137404992 137405043 -13378510 + AluSq SINE Alu 107 158 -155 1118 222 0 0 chr11 137406500 137406703 -13376850 - MER3 DNA MER1_type -6 203 1 999 102 0 0 chr11 137406866 137407003 -13376550 + L1PB1 LINE L1 5991 6127 -24 465 117 0 0 chr11 137407003 137407076 -13376477 + L1PB1 LINE L1 6073 6149 -2 359 360 112 24 chr11 137407124 137407793 -13375760 - L2 LINE L2 -467 2847 2120 252 287 29 11 chr11 137408025 137408133 -13375420 + MIR SINE MIR 96 205 -57 2485 167 16 25 chr11 137408152 137408589 -13374964 - Tigger2a DNA MER2_type -1 433 1 1056 99 118 0 chr11 137409312 137409464 -13374089 - AluSg/x SINE Alu -14 296 127 317 179 12 0 chr11 137409891 137409975 -13373578 + (TG)n Simple_repeat Simple_repeat 2 86 0 236 213 0 148 chr11 137410449 137410557 -13372996 - L1MC4 LINE L1 -1337 6705 6614 234 136 0 0 chr11 137410700 137410744 -13372809 + (CA)n Simple_repeat Simple_repeat 1 44 0 228 108 0 27 chr11 137411054 137411091 -13372462 - MADE1 DNA Mariner -43 37 2 234 272 99 0 chr11 137411190 137411271 -13372282 - MIR3 SINE MIR -12 196 108 239 130 19 0 chr11 137411362 137411416 -13372137 + (CA)n Simple_repeat Simple_repeat 2 56 0 249 298 40 53 chr11 137412048 137412199 -13371354 + MIR SINE MIR 64 212 -50 252 267 13 27 chr11 137412293 137412368 -13371185 + MIR3 SINE MIR 81 154 -54 336 24 0 0 chr11 137413136 137413177 -13370376 + (CA)n Simple_repeat Simple_repeat 2 42 0 423 262 27 44 chr11 137413254 137413437 -13370116 + MIR SINE MIR 9 188 -74 310 246 0 0 chr11 137413685 137413746 -13369807 - L2 LINE L2 -6 3266 3206 21 36 0 0 chr11 137417159 137417187 -13366366 + AT_rich Low_complexity Low_complexity 1 28 0 3258 220 96 16 chr11 137420361 137420497 -13363056 - Charlie2a DNA MER1_type -41 2821 2697 243 0 0 0 chr11 137420497 137420524 -13363029 + (TG)n Simple_repeat Simple_repeat 2 28 0 3258 220 96 16 chr11 137420524 137421416 -13362137 - Charlie2a DNA MER1_type -165 2697 1710 494 219 0 39 chr11 137422570 137422698 -13360855 - MIR SINE MIR -32 230 108 532 208 234 13 chr11 137422919 137423073 -13360480 - MER5A DNA MER1_type 0 189 2 428 240 54 8 chr11 137423230 137423359 -13360194 - L2 LINE L2 -4 3309 3175 2261 58 0 0 chr11 137424616 137424890 -13358663 - AluY SINE Alu -3 308 35 180 111 0 0 chr11 137425879 137425906 -13357647 + (TG)n Simple_repeat Simple_repeat 1 27 0 382 336 26 17 chr11 137426731 137426847 -13356706 - L2 LINE L2 -1 3271 3155 2163 134 36 28 chr11 137426938 137427327 -13356226 - MSTB LTR MaLR -34 392 1 234 283 76 11 chr11 137427662 137427754 -13355799 - L2 LINE L2 -601 2713 2616 202 277 0 0 chr11 137428024 137428071 -13355482 - L2 LINE L2 0 3313 3267 210 203 119 0 chr11 137428113 137428172 -13355381 - MER5A DNA MER1_type -86 103 38 486 362 179 3 chr11 137428260 137428896 -13354657 - L2 LINE L2 -1636 1678 931 333 323 26 73 chr11 137429167 137429359 -13354194 + MIR SINE MIR 63 245 -17 25 0 0 0 chr11 137430982 137431007 -13352546 + AT_rich Low_complexity Low_complexity 1 25 0 185 333 42 42 chr11 137431427 137431592 -13351961 + MIR SINE MIR 97 261 -1 275 297 0 0 chr11 137432599 137432663 -13350890 + A-rich Low_complexity Low_complexity 1 64 0 201 121 0 0 chr11 137434086 137434119 -13349434 + (ATG)n Simple_repeat Simple_repeat 1 33 0 415 323 81 14 chr11 137435544 137435767 -13347786 - L3 LINE CR1 -160 1417 1180 275 208 0 42 chr11 137435940 137436036 -13347517 + (TA)n Simple_repeat Simple_repeat 2 93 0 4915 221 31 19 chr11 137436196 137437566 -13345987 + L1MB8 LINE L1 4103 5486 -692 219 204 0 0 chr11 137437566 137437620 -13345933 + A-rich Low_complexity Low_complexity 1 54 0 5864 212 32 15 chr11 137437628 137439846 -13343707 + L1MC1 LINE L1 4074 6327 -6 3235 199 20 21 chr11 137439870 137440578 -13342975 + L1MB8 LINE L1 5472 6178 0 1988 222 80 82 chr11 137441944 137442468 -13341085 + LTR1B LTR ERV1 1 524 -302 2475 48 3 3 chr11 137442468 137442762 -13340791 + AluY SINE Alu 1 294 -17 1988 222 80 82 chr11 137442762 137443065 -13340488 + LTR1B LTR ERV1 524 826 0 1345 176 157 4 chr11 137443927 137444188 -13339365 + AluJo SINE Alu 1 301 -11 306 383 0 8 chr11 137444245 137444373 -13339180 + MIR SINE MIR 20 146 -62 350 267 95 0 chr11 137444610 137444715 -13338838 + MIR3 SINE MIR 88 202 -6 367 258 168 15 chr11 137445034 137445219 -13338334 - MIR SINE MIR -30 232 25 24 0 0 0 chr11 137445394 137445418 -13338135 + AT_rich Low_complexity Low_complexity 1 24 0 379 278 18 83 chr11 137445425 137445594 -13337959 - L2 LINE L2 0 3313 3156 402 21 0 0 chr11 137448159 137448206 -13335347 + (TA)n Simple_repeat Simple_repeat 1 47 0 21 82 0 0 chr11 137448315 137448364 -13335189 + AT_rich Low_complexity Low_complexity 1 49 0 279 293 84 66 chr11 137449115 137449282 -13334271 + MIR3 SINE MIR 14 183 -25 2550 3 0 25 chr11 137449476 137449762 -13333791 + AluYb8 SINE Alu 39 317 -1 289 299 56 62 chr11 137450420 137450564 -13332989 + MIR SINE MIR 2 145 -63 725 215 23 0 chr11 137450886 137451016 -13332537 - FLAM_A SINE Alu 0 133 1 844 220 28 22 chr11 137451023 137451205 -13332348 - MER5A DNA MER1_type -4 185 3 372 242 21 0 chr11 137451831 137451926 -13331627 - MIR SINE MIR -54 208 112 378 311 28 0 chr11 137453413 137453519 -13330034 + L2 LINE L2 3158 3266 -6 221 300 75 0 chr11 137454854 137454934 -13328619 + MIR SINE MIR 60 145 -63 333 0 0 0 chr11 137454957 137454994 -13328559 + (T)n Simple_repeat Simple_repeat 1 37 0 353 343 49 14 chr11 137455776 137455919 -13327634 - MIR3 SINE MIR -45 163 16 1937 266 84 8 chr11 137456992 137457650 -13325903 - L1ME3 LINE L1 -5 6157 5450 2255 91 10 0 chr11 137458899 137459196 -13324357 - AluY SINE Alu -11 300 1 411 336 8 16 chr11 137459298 137459426 -13324127 - L2 LINE L2 -5 3308 3182 207 279 60 137 chr11 137459568 137459753 -13323800 - L2 LINE L2 -406 2908 2710 498 61 0 0 chr11 137459753 137459819 -13323734 + (TG)n Simple_repeat Simple_repeat 2 67 0 207 279 60 137 chr11 137459819 137459891 -13323662 - L2 LINE L2 -604 2710 2634 910 201 25 15 chr11 137459891 137460095 -13323458 + L1MB3 LINE L1 5974 6179 -4 207 279 60 137 chr11 137460095 137460239 -13323314 - L2 LINE L2 -680 2634 2536 1463 113 10 0 chr11 137460239 137460442 -13323111 - AluSg/x SINE Alu -18 292 88 207 279 60 137 chr11 137460442 137460453 -13323100 - L2 LINE L2 -778 2536 2526 414 272 52 22 chr11 137460614 137460750 -13322803 + MLT1J1 LTR MaLR 257 396 -50 1605 215 36 36 chr11 137460792 137461182 -13322371 + MLT1B LTR MaLR 1 390 0 262 321 107 24 chr11 137461196 137461364 -13322189 - L2 LINE L2 -834 2480 2299 213 357 0 0 chr11 137461967 137462037 -13321516 + L2 LINE L2 3195 3264 -8 321 308 26 0 chr11 137462166 137462283 -13321270 - MIR3 SINE MIR -7 201 82 699 192 46 0 chr11 137462293 137462423 -13321130 + LTR8 LTR ERV1 1 136 -555 199 242 113 0 chr11 137462947 137463009 -13320544 - MIR SINE MIR 0 262 194 1064 184 45 0 chr11 137463009 137463210 -13320343 + MER2 DNA MER2_type 1 210 -135 385 346 15 0 chr11 137463314 137463444 -13320109 - MIR SINE MIR -67 195 64 218 331 68 23 chr11 137464301 137464434 -13319119 + MIR3 SINE MIR 68 206 -2 300 237 64 77 chr11 137466560 137466716 -13316837 - L3b LINE CR1 -190 1393 1240 437 196 141 0 chr11 137466840 137466932 -13316621 - MER81 DNA DNA 0 114 10 259 283 131 58 chr11 137467119 137467462 -13316091 - L2 LINE L2 -1 3312 2945 322 294 47 131 chr11 137468871 137469214 -13314339 - L2 LINE L2 -27 3245 2932 203 384 113 6 chr11 137469357 137469516 -13314037 + MIR SINE MIR 2 177 -85 446 341 44 51 chr11 137469575 137469848 -13313705 - L2 LINE L2 -512 2802 2532 1608 210 63 3 chr11 137470600 137470966 -13312587 - L1MA4 LINE L1 -1 6299 5912 351 333 67 7 chr11 137470990 137471140 -13312413 - MIR SINE MIR -99 163 5 230 305 94 47 chr11 137472890 137473018 -13310535 - L2 LINE L2 0 3313 3180 2166 113 0 31 chr11 137473159 137473478 -13310075 - AluSc SINE Alu 0 309 1 314 358 73 6 chr11 137473525 137473690 -13309863 - MIR SINE MIR -31 231 56 760 363 87 19 chr11 137474976 137475598 -13307955 - L2 LINE L2 -419 2895 2232 850 121 14 64 chr11 137477763 137477903 -13305650 + FLAM_A SINE Alu 1 133 0 314 303 30 15 chr11 137478858 137479056 -13304497 + L1MC4a LINE L1 5730 5930 -1878 740 86 0 46 chr11 137479273 137479425 -13304128 + (TCC)n Simple_repeat Simple_repeat 1 145 0 1704 167 3 38 chr11 137479425 137479743 -13303810 - AluSx SINE Alu -5 307 1 1212 139 6 11 chr11 137480106 137480286 -13303267 - AluSx SINE Alu -133 179 1 218 336 95 43 chr11 137480897 137481013 -13302540 - L2 LINE L2 -15 3257 3136 365 333 8 16 chr11 137481091 137481214 -13302339 + L2 LINE L2 3150 3271 -1 238 378 20 0 chr11 137481247 137481345 -13302208 - L2 LINE L2 -222 3050 2951 514 304 59 13 chr11 137483054 137483291 -13300262 - MIR SINE MIR 0 262 15 199 288 0 0 chr11 137484369 137484432 -13299121 + MIR SINE MIR 33 95 -113 23 68 0 0 chr11 137484710 137484754 -13298799 + AT_rich Low_complexity Low_complexity 1 44 0 21 82 0 0 chr11 137484776 137484825 -13298728 + AT_rich Low_complexity Low_complexity 1 49 0 256 279 148 66 chr11 137485539 137485783 -13297770 + L2 LINE L2 2447 2710 -604 384 309 33 22 chr11 137485917 137486131 -13297422 + L2 LINE L2 2782 2999 -314 352 311 12 3 chr11 137487574 137487736 -13295817 - MIR SINE MIR -65 143 35 314 358 73 6 chr11 137488867 137489032 -13294521 + MIR SINE MIR 56 231 -31 2009 134 6 26 chr11 137489079 137489392 -13294161 + AluSq SINE Alu 1 307 -6 805 243 23 23 chr11 137489435 137489612 -13293941 - MER45A DNA AcHobo 0 178 2 354 257 46 153 chr11 137489632 137489998 -13293555 - L2 LINE L2 -2418 896 570 481 225 174 7 chr11 137490190 137490328 -13293225 + MER5A DNA MER1_type 29 189 0 5234 119 22 4 chr11 137490686 137491427 -13292126 + THE1C-int LTR MaLR 827 1580 0 2783 107 25 0 chr11 137491427 137491793 -13291760 + THE1C LTR MaLR 1 375 0 466 294 43 21 chr11 137492008 137492195 -13291358 + L2 LINE L2 3123 3313 0 1382 144 17 122 chr11 137492614 137492799 -13290754 - L1MDa LINE L1 -3991 2549 2427 1936 142 18 0 chr11 137492799 137493081 -13290472 - AluSx SINE Alu -25 287 1 1382 144 17 122 chr11 137493081 137493298 -13290255 - L1MDa LINE L1 -4113 2427 2189 1993 171 44 97 chr11 137493308 137493836 -13289717 - L1MDa LINE L1 -5999 541 42 722 237 35 0 chr11 137494004 137494177 -13289376 - MLT1G LTR MaLR -2 588 410 2298 242 66 26 chr11 137494231 137494912 -13288641 - MER21B LTR ERV1 -58 805 98 307 208 19 0 chr11 137496061 137496114 -13287439 + MER58 DNA MER1_type 1 54 -2366 684 212 72 101 chr11 137496126 137496433 -13287120 - Zaphod DNA AcHobo -469 3562 3265 1439 162 27 0 chr11 137496455 137496714 -13286839 - L1MA8 LINE L1 -5 6286 6021 523 281 57 42 chr11 137496886 137497114 -13286439 + MIR SINE MIR 35 252 -10 894 238 141 81 chr11 137497265 137497783 -13285770 + MLT1H LTR MaLR 1 549 0 248 299 31 41 chr11 137498272 137498369 -13285184 - MIR SINE MIR -165 97 2 244 182 136 23 chr11 137498554 137498642 -13284911 + L1M4 LINE L1 4456 4553 -1593 213 313 42 31 chr11 137499270 137499366 -13284187 + MIR SINE MIR 117 213 -49 399 315 155 9 chr11 137500260 137500479 -13283074 + L2 LINE L2 2559 2809 -505 15264 51 69 3 chr11 137500591 137502572 -13280981 + L1P LINE L1 1 2110 -4036 5342 171 99 6 chr11 137502672 137503761 -13279792 - L1P LINE L1 -937 5209 4020 1921 146 10 13 chr11 137503950 137504252 -13279301 + AluJb SINE Alu 1 301 -11 200 326 0 0 chr11 137504651 137504700 -13278853 + MER5A DNA MER1_type 9 57 -132 355 329 176 11 chr11 137504788 137505141 -13278412 - L2 LINE L2 -1043 2271 1861 233 294 43 43 chr11 137505135 137505227 -13278326 - MIR SINE MIR -149 113 22 * 198 322 97 45 chr11 137505782 137506049 -13277504 - L2 LINE L2 0 3313 3033 204 297 294 31 chr11 137506369 137506753 -13276800 - L2 LINE L2 -601 2713 2229 488 133 84 0 chr11 137506906 137506989 -13276564 + AluSg/x SINE Alu 206 295 -15 11677 24 1 0 chr11 137508094 137509468 -13274085 + L1P LINE L1 2426 3800 -2346 284 247 12 0 chr11 137510153 137510234 -13273319 + (TA)n Simple_repeat Simple_repeat 1 82 0 277 187 77 184 chr11 137511199 137511525 -13272028 + MLT1F-int LTR MaLR 1074 1364 -7 883 243 19 10 chr11 137511532 137511738 -13271815 + MLT1F LTR MaLR 1 208 -334 495 90 0 64 chr11 137511738 137511816 -13271737 + MER31B LTR ERV1 1 73 -393 689 150 8 0 chr11 137511898 137512018 -13271535 - L1MC1 LINE L1 -428 5905 5785 264 219 146 0 chr11 137513095 137513177 -13270376 - MIR SINE MIR 0 262 169 1849 82 31 52 chr11 137513277 137513568 -13269985 - THE1B LTR MaLR -79 285 1 575 278 7 7 chr11 137513610 137513754 -13269799 + L2 LINE L2 3169 3312 -1 229 253 137 34 chr11 137514738 137514884 -13268669 + L1ME LINE L1 5706 5866 -255 32 67 0 0 chr11 137515252 137515312 -13268241 + AT_rich Low_complexity Low_complexity 1 60 0 722 271 36 0 chr11 137515339 137515531 -13268022 - MIR SINE MIR 0 262 64 1774 86 0 0 chr11 137516599 137516821 -13266732 + AluSc SINE Alu 1 222 -87 812 111 0 0 chr11 137617955 137618063 -13165490 - FLAM_C SINE Alu -35 108 1 259 362 75 17 chr11 137618320 137618383 -13165170 + MIR SINE MIR 1 59 -203 829 174 0 0 chr11 137618383 137618515 -13165038 + FLAM_C SINE Alu 1 132 -1 259 362 75 17 chr11 137618515 137618625 -13164928 + MIR SINE MIR 59 184 -78 602 170 15 44 chr11 137618808 137618943 -13164610 - FLAM_C SINE Alu -7 136 6 21 36 0 0 chr11 137619193 137619221 -13164332 + GC_rich Low_complexity Low_complexity 1 28 0 196 269 167 51 chr11 137619468 137619624 -13163929 + MIR3 SINE MIR 21 194 -14 450 264 54 14 chr11 137619624 137619772 -13163781 + MIR SINE MIR 90 243 -19 186 284 14 40 chr11 137621150 137621224 -13162329 - L2 LINE L2 -2810 504 433 193 273 0 0 chr11 137621963 137622007 -13161546 + MIR3 SINE MIR 111 154 -54 866 222 5 10 chr11 137623809 137624003 -13159550 - MER41D LTR ERV1 0 557 365 2163 105 16 0 chr11 137624337 137624642 -13158911 + AluSx SINE Alu 1 310 -2 183 80 0 0 chr11 137625794 137625819 -13157734 + (GAA)n Simple_repeat Simple_repeat 2 26 0 4668 131 31 58 chr11 137626381 137626440 -13157113 - L1MA1 LINE L1 -107 6195 6136 2139 63 35 14 chr11 137626440 137626747 -13156806 - AluY SINE Alu 0 313 1 2049 112 7 3 chr11 137626750 137627045 -13156508 - AluSg SINE Alu -14 296 1 4668 131 31 58 chr11 137627045 137627128 -13156425 - L1MA1 LINE L1 -168 6134 6050 288 0 0 0 chr11 137627128 137627160 -13156393 + (TG)n Simple_repeat Simple_repeat 1 32 0 4668 131 31 58 chr11 137627160 137627375 -13156178 - L1MA1 LINE L1 -252 6050 5831 239 0 32 0 chr11 137627375 137627406 -13156147 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 2142 91 0 0 chr11 137627410 137627686 -13155867 - AluSx SINE Alu -36 276 1 4668 131 31 58 chr11 137627686 137628074 -13155479 - L1MA1 LINE L1 -474 5828 5431 2121 125 0 0 chr11 137628074 137628371 -13155182 + AluSx SINE Alu 1 297 -15 4668 131 31 58 chr11 137628371 137628408 -13155145 - L1MA1 LINE L1 -871 5431 5395 2335 93 0 10 chr11 137628408 137628721 -13154832 - AluY SINE Alu -1 310 1 2192 121 0 0 chr11 137628723 137629021 -13154532 - AluSq SINE Alu -15 298 1 4668 131 31 58 chr11 137629021 137629290 -13154263 - L1MA1 LINE L1 -908 5394 5171 2165 128 0 3 chr11 137629290 137629603 -13153950 - AluSp SINE Alu -1 312 1 4668 131 31 58 chr11 137629603 137629837 -13153716 - L1MA1 LINE L1 -1131 5171 4932 1588 154 20 45 chr11 137629846 137630138 -13153415 - AluJo SINE Alu -27 285 1 224 222 272 0 chr11 137630648 137630729 -13152824 + L2 LINE L2 3199 3301 -12 2047 120 3 7 chr11 137630756 137631057 -13152496 + AluSx SINE Alu 1 300 -12 348 312 69 23 chr11 137631079 137631297 -13152256 - L2 LINE L2 -412 2902 2675 2342 82 0 3 chr11 137631614 137631917 -13151636 + AluSq SINE Alu 1 302 -11 2409 75 3 0 chr11 137631917 137632223 -13151330 + AluY SINE Alu 1 307 -4 307 279 139 35 chr11 137632344 137632415 -13151138 + MIR SINE MIR 70 132 -130 1830 174 3 0 chr11 137632415 137632713 -13150840 + AluJb SINE Alu 1 299 -13 307 279 139 35 chr11 137632713 137632813 -13150740 + MIR SINE MIR 132 259 -3 302 231 13 35 chr11 137632905 137632932 -13150621 - MIR SINE MIR -62 146 120 1921 101 52 7 chr11 137632932 137633218 -13150335 + AluSx SINE Alu 3 301 -11 302 231 13 35 chr11 137633218 137633311 -13150242 - MIR SINE MIR -88 120 60 1310 122 0 0 chr11 137633498 137633686 -13149867 + AluSg/x SINE Alu 123 310 -2 1116 274 38 19 chr11 137633728 137634097 -13149456 - L2 LINE L2 -6 3266 2891 1859 141 34 7 chr11 137634254 137634552 -13149001 - AluSx SINE Alu -6 306 1 1154 172 20 32 chr11 137634560 137634652 -13148901 + AluJo SINE Alu 56 148 -164 1822 112 60 4 chr11 137634652 137634913 -13148640 + AluSx SINE Alu 11 287 -20 216 0 0 0 chr11 137634913 137634937 -13148616 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 1154 172 20 32 chr11 137634942 137635099 -13148454 + AluJo SINE Alu 148 302 -10 2128 107 3 0 chr11 137635102 137635423 -13148130 + AluSq SINE Alu 1 313 0 271 274 0 0 chr11 137635868 137635952 -13147601 - MIR SINE MIR -132 130 47 624 82 21 11 chr11 137636364 137636703 -13146850 + MSR1 Satellite Satellite 1 342 -17 190 160 0 53 chr11 137637047 137637141 -13146412 + CT-rich Low_complexity Low_complexity 1 89 0 1067 123 0 7 chr11 137637329 137637484 -13146069 - AluSq SINE Alu -159 154 1 261 0 0 0 chr11 137637601 137637630 -13145923 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 1115 112 31 0 chr11 137638033 137638194 -13145359 - AluSg/x SINE Alu -13 297 132 2338 84 3 0 chr11 137638194 137638493 -13145060 - AluSx SINE Alu -12 300 1 1060 235 85 33 chr11 137638558 137639050 -13144503 + L2 LINE L2 2528 3070 -243 2079 67 60 4 chr11 137639050 137639317 -13144236 + AluSx SINE Alu 1 311 0 229 35 0 0 chr11 137639317 137639346 -13144207 + (TAAA)n Simple_repeat Simple_repeat 2 88 0 1060 235 85 33 chr11 137639346 137639408 -13144145 + L2 LINE L2 3070 3127 -186 416 326 9 45 chr11 137639408 137639632 -13143921 - Charlie8 DNA MER1_type -2201 216 1 249 314 0 23 chr11 137639632 137639718 -13143835 - MIR3 SINE MIR -37 171 88 663 247 26 97 chr11 137640777 137641085 -13142468 - L2 LINE L2 0 3272 2987 494 271 68 31 chr11 137641096 137641468 -13142085 - L1P4 LINE L1 -716 5449 5060 1976 78 23 78 chr11 137641471 137641778 -13141775 - AluSq SINE Alu -1 312 23 2054 114 66 0 chr11 137641941 137642230 -13141323 - AluSq SINE Alu -5 308 1 2373 92 0 23 chr11 137642524 137642661 -13140892 + AluSp SINE Alu 3 142 -171 2488 86 0 0 chr11 137642661 137642962 -13140591 + AluSg SINE Alu 3 303 -7 2373 92 0 23 chr11 137642962 137643128 -13140425 + AluSp SINE Alu 142 299 -14 226 143 0 20 chr11 137643128 137643166 -13140387 - Alu SINE Alu -11 291 253 1893 176 0 3 chr11 137643237 137643543 -13140010 + AluSq SINE Alu 1 305 -8 943 172 43 0 chr11 137643548 137643751 -13139802 + AluJb SINE Alu 142 312 0 2294 90 3 22 chr11 137643887 137644199 -13139354 + AluSg1 SINE Alu 1 306 -3 1923 128 9 55 chr11 137644630 137644957 -13138596 - AluJb SINE Alu 0 312 1 2298 110 7 0 chr11 137645736 137646046 -13137507 + AluSq SINE Alu 1 312 -1 2329 85 3 0 chr11 137646329 137646640 -13136913 - AluSx SINE Alu 0 312 1 296 313 96 0 chr11 137646670 137646785 -13136768 + L2 LINE L2 3146 3271 -1 263 284 112 78 chr11 137646821 137647053 -13136500 - MIR SINE MIR -1 261 22 247 302 12 23 chr11 137647101 137647187 -13136366 + Charlie1 DNA MER1_type 2 86 -2675 1927 119 35 14 chr11 137647187 137647472 -13136081 + AluSx SINE Alu 1 291 -21 1330 122 5 11 chr11 137647534 137647722 -13135831 - AluSc SINE Alu -35 274 88 1254 163 12 80 chr11 137647733 137647858 -13135695 + Charlie1 DNA MER1_type 2408 2540 -221 1512 195 0 46 chr11 137647858 137647953 -13135600 + AluJo SINE Alu 1 99 -213 2352 95 7 0 chr11 137647953 137648248 -13135305 + AluSp SINE Alu 1 297 -16 1512 195 0 46 chr11 137648248 137648455 -13135098 + AluJo SINE Alu 99 289 -23 1254 163 12 80 chr11 137648455 137648524 -13135029 + Charlie1 DNA MER1_type 2540 2612 -149 2307 96 3 3 chr11 137648524 137648826 -13134727 - AluSg SINE Alu -8 302 1 1254 163 12 80 chr11 137648826 137648840 -13134713 + Charlie1 DNA MER1_type 2612 2625 -136 530 204 74 9 chr11 137648840 137648991 -13134562 - FLAM_A SINE Alu 0 158 1 1254 163 12 80 chr11 137648991 137649104 -13134449 + Charlie1 DNA MER1_type 2625 2710 -51 1229 142 19 24 chr11 137649106 137649311 -13134242 - AluJo SINE Alu -21 291 88 2203 74 3 47 chr11 137649341 137649658 -13133895 + AluSp SINE Alu 1 304 0 2179 128 0 13 chr11 137649664 137649800 -13133753 + AluSx SINE Alu 1 137 -175 2278 112 0 0 chr11 137649800 137650095 -13133458 + AluSx SINE Alu 1 295 -17 2179 128 0 13 chr11 137650095 137650264 -13133289 + AluSx SINE Alu 137 302 -10 2191 89 12 55 chr11 137650407 137650733 -13132820 + AluSx SINE Alu 1 312 0 1730 157 0 37 chr11 137650767 137651066 -13132487 + AluJb SINE Alu 13 300 -12 2174 119 0 44 chr11 137651134 137651319 -13132234 - AluSg SINE Alu -4 306 139 2330 106 0 22 chr11 137651319 137651639 -13131914 - AluSp SINE Alu 0 313 1 2174 119 0 44 chr11 137651639 137651773 -13131780 - AluSg SINE Alu -171 139 1 417 326 8 0 chr11 137651840 137651972 -13131581 - MIR SINE MIR -79 183 51 1615 172 41 14 chr11 137652025 137652315 -13131238 - AluJo SINE Alu -14 298 1 2148 118 0 17 chr11 137652327 137652623 -13130930 - AluSx SINE Alu -21 291 1 283 301 36 0 chr11 137652720 137652803 -13130750 + MIR3 SINE MIR 106 191 -17 291 206 0 15 chr11 137652833 137652901 -13130652 - MLT1D LTR MaLR 0 505 439 2402 80 10 0 chr11 137652902 137653201 -13130352 + AluY SINE Alu 1 302 -9 541 191 0 36 chr11 137653224 137653334 -13130219 - FLAM_C SINE Alu -27 116 11 546 250 0 0 chr11 137653367 137653479 -13130074 + FLAM_A SINE Alu 1 112 -30 2122 128 7 3 chr11 137653524 137653822 -13129731 + AluSx SINE Alu 1 299 -13 2935 156 12 30 chr11 137653851 137654416 -13129137 + L1MA7 LINE L1 5594 6148 -143 22 0 0 0 chr11 137654423 137654445 -13129108 + AT_rich Low_complexity Low_complexity 1 22 0 2179 101 3 10 chr11 137654466 137654763 -13128790 - AluY SINE Alu -16 295 1 864 172 0 0 chr11 137654787 137654921 -13128632 - AluJo SINE Alu -178 134 1 369 138 0 38 chr11 137654923 137655003 -13128550 - L1M3 LINE L1 -660 5674 5598 1090 171 11 5 chr11 137655006 137655193 -13128360 - AluSg/x SINE Alu -2 310 123 348 162 0 0 chr11 137655194 137655262 -13128291 - AluSp/q SINE Alu -2 301 234 231 184 20 0 chr11 137755526 137755575 -13027978 - MLT2C2 LTR ERVL -5 459 410 257 242 0 0 chr11 137755598 137755664 -13027889 + (TA)n Simple_repeat Simple_repeat 2 67 0 14067 120 18 1 chr11 137755672 137757679 -13025874 + Tigger1 DNA MER2_type 1 2041 -377 260 310 11 0 chr11 137758686 137758773 -13024780 + CT-rich Low_complexity Low_complexity 2 89 0 306 290 11 0 chr11 137759767 137759860 -13023693 + MIR3 SINE MIR 88 181 -27 300 267 0 86 chr11 137760144 137760260 -13023293 + L2 LINE L2 3208 3313 0 2298 81 3 7 chr11 137761438 137761736 -13021817 + AluSg SINE Alu 1 297 -13 180 0 0 0 chr11 137761880 137761900 -13021653 + (TTA)n Simple_repeat Simple_repeat 1 20 0 494 309 52 33 chr11 137762477 137762687 -13020866 + MIR SINE MIR 3 216 -46 318 297 109 0 chr11 137762950 137763078 -13020475 - MIR SINE MIR -97 165 24 279 336 25 49 chr11 137763218 137763340 -13020213 + MIR SINE MIR 27 145 -63 4065 237 70 55 chr11 137763404 137763657 -13019896 - L1MEc LINE L1 -2550 4094 3846 2012 139 7 0 chr11 137763657 137763959 -13019594 - AluSc SINE Alu -5 304 1 4065 237 70 55 chr11 137763959 137765657 -13017896 - L1MEc LINE L1 -2798 3846 2167 493 257 48 41 chr11 137765683 137766012 -13017541 - L1M4c LINE L1 -4303 2368 1905 254 188 0 58 chr11 137766010 137766079 -13017474 - L1MC1 LINE L1 0 6333 6269 * 673 193 8 0 chr11 137766095 137766214 -13017339 - L1MC1 LINE L1 -140 6193 6074 1115 238 36 74 chr11 137766220 137766362 -13017191 - L1M4 LINE L1 -1701 4445 4299 2199 143 30 108 chr11 137766362 137766824 -13016729 - MSTC LTR MaLR -2 426 1 1115 238 36 74 chr11 137766824 137767101 -13016452 - L1M4 LINE L1 -1847 4299 4042 764 125 268 18 chr11 137767132 137767300 -13016253 - L1PB1 LINE L1 -1 6150 5941 * 1839 255 85 27 chr11 137767293 137768218 -13015335 - L1M4c LINE L1 -4731 1915 942 182 273 0 0 chr11 137769365 137769409 -13014144 + L2 LINE L2 3261 3304 -9 538 297 78 117 chr11 137771417 137772525 -13011028 + L2 LINE L2 835 1898 -1416 2762 43 9 0 chr11 137772526 137772852 -13010701 + L1P3 LINE L1 5388 5716 -438 384 332 113 8 chr11 137772894 137773141 -13010412 + L2 LINE L2 1990 2262 -1052 705 290 109 25 chr11 137773186 137773552 -13010001 - L2 LINE L2 0 3313 2917 441 0 0 0 chr11 137773658 137773707 -13009846 + (A)n Simple_repeat Simple_repeat 1 49 0 377 271 100 24 chr11 137774130 137774300 -13009253 + Tigger8 DNA MER2_type 455 637 -29 2217 191 79 18 chr11 137776036 137776579 -13006974 - Charlie1a DNA MER1_type 0 1455 880 315 133 17 0 chr11 137776579 137776639 -13006914 + L1MD3 LINE L1 7927 7987 -8 * 1139 186 37 16 chr11 137776636 137776878 -13006675 + L1MB7 LINE L1 5315 5561 -613 4122 156 23 6 chr11 137776881 137777580 -13005973 - MER50 LTR ERV1 -23 711 1 228 176 0 0 chr11 137777580 137777614 -13005939 + L1MB7 LINE L1 5560 5593 -571 1096 198 35 13 chr11 137778116 137778348 -13005205 - MLT1F1 LTR MaLR 0 567 331 2060 199 53 72 chr11 137778348 137778426 -13005127 + L1MB7 LINE L1 5593 5671 -513 2095 210 106 77 chr11 137778426 137779132 -13004421 - LTR8A LTR ERV1 0 727 1 2060 199 53 72 chr11 137779132 137779293 -13004260 + L1MB7 LINE L1 5671 5834 -350 3451 213 48 55 chr11 137779293 137780159 -13003394 + MER21B LTR ERV1 1 860 -3 2060 199 53 72 chr11 137780159 137780487 -13003066 + L1MB7 LINE L1 5834 6150 -34 2129 183 53 13 chr11 137780494 137780948 -13002605 - Charlie1a DNA MER1_type -564 891 420 671 164 76 58 chr11 137780953 137781124 -13002429 - MER58C DNA MER1_type -5 210 37 547 247 53 7 chr11 137781141 137781291 -13002262 - Charlie1a DNA MER1_type -1041 414 258 1032 225 56 24 chr11 137781336 137781585 -13001968 - Charlie1a DNA MER1_type -1198 257 1 1398 197 92 16 chr11 137781586 137782051 -13001502 - MER34 LTR ERV1 0 542 1 548 211 72 20 chr11 137782161 137782313 -13001240 + MIR SINE MIR 77 236 -26 1751 215 34 5 chr11 137782598 137782979 -13000574 - Charlie4a DNA MER1_type -101 407 16 270 0 0 0 chr11 137783408 137783438 -13000115 + (CA)n Simple_repeat Simple_repeat 2 31 0 719 255 61 8 chr11 137784170 137784417 -12999136 - MLT1D LTR MaLR 0 505 246 864 322 35 24 chr11 137784849 137785222 -12998331 + L2 LINE L2 2935 3311 -2 286 229 33 0 chr11 137785313 137785374 -12998179 + MIR SINE MIR 84 146 -116 309 341 52 29 chr11 137785663 137785836 -12997717 - MIR SINE MIR -50 212 36 274 256 248 16 chr11 137787658 137787787 -12995766 + L3 LINE CR1 1301 1459 -118 220 297 0 47 chr11 137787824 137787888 -12995665 + L2 LINE L2 3206 3266 -6 208 167 24 0 chr11 137788762 137788804 -12994749 + GA-rich Low_complexity Low_complexity 1 43 0 210 37 0 0 chr11 137789567 137789594 -12993959 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 822 265 15 5 chr11 137789744 137789940 -12993613 + MER58A DNA MER1_type 16 213 -11 217 287 140 70 chr11 137789944 137790087 -12993466 + L2 LINE L2 2578 2730 -584 2530 83 50 42 chr11 137790296 137790657 -12992896 - THE1B LTR MaLR 0 364 1 235 260 13 65 chr11 137790908 137790985 -12992568 - L2 LINE L2 0 3313 3241 2137 86 0 28 chr11 137791189 137791480 -12992073 + AluSp SINE Alu 27 309 -4 1920 125 73 0 chr11 137792673 137792962 -12990591 - AluSg SINE Alu 0 310 1 457 276 99 6 chr11 137793423 137793604 -12989949 - MIR SINE MIR -2 260 63 760 289 42 56 chr11 137793987 137794344 -12989209 - Tigger8 DNA MER2_type -307 359 8 289 308 57 44 chr11 137795138 137795297 -12988256 - MIR SINE MIR -6 256 96 292 329 82 14 chr11 137795413 137795559 -12987994 + MIR SINE MIR 36 191 -71 201 308 0 0 chr11 137795560 137795625 -12987928 + (CATATA)n Simple_repeat Simple_repeat 5 69 0 2442 81 3 0 chr11 137795703 137796011 -12987542 + AluY SINE Alu 1 309 -2 233 321 53 59 chr11 137796564 137796751 -12986802 - MIR3 SINE MIR -7 201 16 3089 167 55 37 chr11 137797575 137798078 -12985475 + MER39B LTR ERV1 1 519 -134 2241 119 0 0 chr11 137798078 137798388 -12985165 - AluSx SINE Alu -2 310 1 3089 167 55 37 chr11 137798388 137798506 -12985047 + MER39B LTR ERV1 519 633 -20 424 309 28 7 chr11 137798515 137798656 -12984897 + MIR3 SINE MIR 37 173 -51 213 300 0 0 chr11 137799018 137799068 -12984485 - L2 LINE L2 -21 3251 3202 198 191 0 0 chr11 137799322 137799364 -12984189 + (CA)n Simple_repeat Simple_repeat 1 42 0 267 333 0 21 chr11 137800895 137800991 -12982562 - MIR3 SINE MIR -34 174 81 253 273 74 3 chr11 137802279 137802373 -12981180 - MIR SINE MIR -63 145 54 243 0 0 0 chr11 137802446 137802473 -12981080 + (T)n Simple_repeat Simple_repeat 1 27 0 219 329 37 0 chr11 137804246 137804328 -12979225 - MIR SINE MIR -88 174 90 24 24 0 24 chr11 137804458 137804469 -12979084 + AT_rich Low_complexity Low_complexity 1 11 -30 4295 156 20 67 chr11 137804469 137805347 -12978206 + L1MA8 LINE L1 5449 6285 -6 24 24 0 24 chr11 137805347 137805377 -12978176 + AT_rich Low_complexity Low_complexity 11 41 0 976 171 94 5 chr11 137805379 137805435 -12978118 - MER2 DNA MER2_type 0 345 295 539 140 11 0 chr11 137805435 137805528 -12978025 + L1MA4A LINE L1 6205 6298 -5 976 171 94 5 chr11 137805528 137805732 -12977821 - MER2 DNA MER2_type -50 295 14 189 239 0 0 chr11 137806287 137806333 -12977220 + MIR SINE MIR 212 257 -5 261 297 58 29 chr11 137806707 137806845 -12976708 - MIR SINE MIR -89 173 32 454 101 13 13 chr11 137808545 137808624 -12974929 + (TTCC)n Simple_repeat Simple_repeat 4 82 0 292 192 90 51 chr11 137809405 137809483 -12974070 + MIR SINE MIR 71 151 -111 231 317 0 0 chr11 137809552 137809612 -12973941 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 1127 99 12 6 chr11 137809613 137809774 -12973779 - AluSp SINE Alu -13 300 139 929 96 22 7 chr11 137809874 137810010 -12973543 - AluSp SINE Alu -175 138 1 248 356 30 23 chr11 137811665 137811797 -12971756 + MIR SINE MIR 48 180 -82 1647 113 0 9 chr11 137812212 137812441 -12971112 + AluSc SINE Alu 66 292 -17 1134 206 73 105 chr11 137812478 137812873 -12970680 + MLT2B1 LTR ERVL 1 474 -41 214 195 0 0 chr11 137812878 137812919 -12970634 + (TA)n Simple_repeat Simple_repeat 1 41 0 239 53 0 26 chr11 137812951 137812989 -12970564 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 243 196 59 0 chr11 137813423 137813474 -12970079 - L2 LINE L2 -8 3305 3252 48 18 0 0 chr11 137814438 137814493 -12969060 + AT_rich Low_complexity Low_complexity 1 55 0 263 252 146 10 chr11 137815495 137815598 -12967955 - LTR16A LTR ERVL 0 450 334 30 27 0 0 chr11 137815855 137815892 -12967661 + AT_rich Low_complexity Low_complexity 1 37 0 180 373 24 32 chr11 137817053 137817179 -12966374 - L2 LINE L2 -216 3056 2932 249 310 102 43 chr11 137817973 137818160 -12965393 - MIR SINE MIR -56 206 9 243 314 68 94 chr11 137818164 137818263 -12965290 - L2 LINE L2 -932 2382 2282 270 204 0 0 chr11 137818263 137818317 -12965236 - MIR3 SINE MIR -2 206 153 243 314 68 94 chr11 137818317 137818623 -12964930 - L2 LINE L2 -1032 2282 1936 23 0 0 0 chr11 137819860 137819883 -12963670 + AT_rich Low_complexity Low_complexity 1 23 0 310 254 41 11 chr11 137820209 137820396 -12963157 - L1MC4a LINE L1 -306 5815 5746 26 30 0 0 chr11 137820443 137820476 -12963077 + AT_rich Low_complexity Low_complexity 1 33 0 956 263 159 27 chr11 137820488 137821047 -12962506 - MLT1G LTR MaLR -3 587 1 231 293 43 35 chr11 137821197 137821313 -12962240 + MIR3 SINE MIR 89 205 -3 1628 186 112 0 chr11 137821325 137821637 -12961916 + MER7A DNA MER2_type 2 346 0 186 43 0 0 chr11 137823103 137823126 -12960427 + (A)n Simple_repeat Simple_repeat 1 23 0 238 146 36 73 chr11 137824046 137824101 -12959452 + L2 LINE L2 3215 3267 -5 2504 62 0 34 chr11 137824809 137825131 -12958422 + AluY SINE Alu 1 311 0 542 276 0 0 chr11 137825830 137825953 -12957600 + L2 LINE L2 3190 3312 -1 2076 102 18 3 chr11 137826731 137827014 -12956539 + AluSq SINE Alu 1 287 -26 509 94 0 0 chr11 137827439 137827523 -12956030 + AluSg/x SINE Alu 215 298 0 267 325 118 44 chr11 137828244 137828702 -12954851 + L2 LINE L2 1717 2208 -1106 2204 180 108 44 chr11 137828750 137829271 -12954282 + MLT2B3 LTR ERVL 1 554 0 4719 217 37 9 chr11 137829271 137830739 -12952814 + HERVL-B3 LTR ERVL 1 1579 -4185 * 18929 155 40 8 chr11 137830736 137833856 -12949697 + HERVL-B3 LTR ERVL 2546 5764 0 2593 174 44 32 chr11 137833856 137834230 -12949323 + Ricksha DNA DNA 339 718 -1328 303 270 19 38 chr11 137834094 137834253 -12949300 + MLT2D LTR ERVL 298 453 -100 * 400 172 129 11 chr11 137834253 137834346 -12949207 + MLT2D LTR ERVL 311 414 0 329 347 175 24 chr11 137834468 137834966 -12948587 + L2 LINE L2 2398 2970 -344 1879 119 48 7 chr11 137835150 137835419 -12948134 + AluSg SINE Alu 1 280 -30 253 0 54 0 chr11 137835424 137835461 -12948092 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3117 149 175 10 chr11 137836823 137837499 -12946054 + LTR48 LTR ERV1 1 787 0 1196 84 0 36 chr11 137837650 137837817 -12945736 + MER4B LTR ERV1 1 161 -449 400 169 0 0 chr11 137837820 137837920 -12945633 + FLAM SINE Alu 68 124 -9 2266 90 10 3 chr11 137838557 137838847 -12944706 - AluSq SINE Alu -21 292 1 416 280 181 26 chr11 137839030 137839223 -12944330 + MIR SINE MIR 28 250 -12 2311 108 0 0 chr11 137840677 137840974 -12942579 + AluSc SINE Alu 13 309 0 223 250 0 0 chr11 137841602 137841646 -12941907 + (CA)n Simple_repeat Simple_repeat 1 44 0 288 344 32 0 chr11 137841646 137841739 -12941814 + MIR SINE MIR 27 122 -86 318 333 46 7 chr11 137844256 137844409 -12939144 - MIR3 SINE MIR -14 194 36 527 251 151 39 chr11 137849105 137849540 -12934013 - L1ME LINE L1 -527 5594 5111 22 70 0 0 chr11 137851659 137851702 -12931851 + AT_rich Low_complexity Low_complexity 1 43 0 716 203 34 108 chr11 137851770 137852065 -12931488 - L1ME3 LINE L1 -4 6158 5886 634 216 111 6 chr11 137852819 137852990 -12930563 + MER5A DNA MER1_type 1 189 0 270 316 73 15 chr11 137853257 137853393 -12930160 + L2 LINE L2 3168 3311 -2 1276 202 10 20 chr11 137853422 137853719 -12929834 + L1MB8 LINE L1 5873 6166 -12 365 212 0 0 chr11 137855275 137855341 -12928212 + MLT1L LTR MaLR 328 393 -222 2437 76 0 0 chr11 137855441 137855731 -12927822 - AluSg SINE Alu -20 290 1 1234 184 70 70 chr11 137856344 137856667 -12926886 + AluJb SINE Alu 1 323 0 206 295 16 0 chr11 137856860 137856921 -12926632 - MER5A DNA MER1_type -74 115 54 198 290 30 30 chr11 137857014 137857114 -12926439 - L2 LINE L2 -238 3034 2935 2401 94 3 0 chr11 137857308 137857615 -12925938 - AluSp SINE Alu -5 308 1 231 36 0 0 chr11 137857680 137857708 -12925845 + (TG)n Simple_repeat Simple_repeat 1 28 0 530 230 0 44 chr11 137857859 137857994 -12925559 - FLAM_C SINE Alu -14 129 1 3550 197 27 25 chr11 137857994 137858870 -12924683 - L1MCa LINE L1 -4669 1938 832 1608 254 94 35 chr11 137858867 137859430 -12924123 - L1MCa LINE L1 -5814 612 17 * 802 305 52 25 chr11 137859438 137859838 -12923715 + L2 LINE L2 2830 3240 -73 9523 216 81 34 chr11 137860001 137863148 -12920405 + L1MB3 LINE L1 538 3536 -2883 180 0 0 0 chr11 137863148 137863168 -12920385 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9523 216 81 34 chr11 137863168 137863634 -12919919 + L1MB3 LINE L1 3536 3979 -2440 1680 192 0 32 chr11 137863634 137863942 -12919611 + AluJb SINE Alu 1 298 -14 9523 216 81 34 chr11 137863942 137865887 -12917666 + L1MB3 LINE L1 3979 6416 -3 441 293 30 0 chr11 137865888 137866021 -12917532 + L1ME1 LINE L1 6012 6148 -18 257 0 30 0 chr11 137866233 137866266 -12917287 + (TA)n Simple_repeat Simple_repeat 1 34 0 541 312 24 20 chr11 137866300 137866547 -12917006 - MIR SINE MIR -2 260 13 224 111 22 0 chr11 137867173 137867218 -12916335 + GA-rich Low_complexity Low_complexity 1 46 0 207 324 59 0 chr11 137867230 137867298 -12916255 - L2 LINE L2 0 3272 3201 2187 117 3 0 chr11 137868439 137868738 -12914815 + AluSp SINE Alu 1 300 -13 200 352 179 0 chr11 137869902 137870064 -12913489 + MIR SINE MIR 48 238 -24 799 35 50 7 chr11 137871077 137871218 -12912335 + (TG)n Simple_repeat Simple_repeat 1 147 0 290 247 103 62 chr11 137872424 137872570 -12910983 - MER5B DNA MER1_type 0 178 27 208 132 0 38 chr11 137878220 137878273 -12905280 + (AGGGGG)n Simple_repeat Simple_repeat 6 56 0 6770 146 54 7 chr11 137879204 137879820 -12903733 - Tigger3b DNA MER2_type -1798 1230 645 2592 60 0 0 chr11 137879820 137880121 -12903432 - AluY SINE Alu -10 301 1 6770 146 54 7 chr11 137880121 137880664 -12902889 - Tigger3b DNA MER2_type -2383 645 16 1148 165 21 0 chr11 137881845 137882039 -12901514 - MER46A DNA MER2_type -6 230 33 2526 211 19 33 chr11 137882159 137882738 -12900815 - MER74B LTR ERVL -2 620 50 316 313 105 54 chr11 137883733 137884027 -12899526 - L2 LINE L2 0 3313 3005 364 303 139 42 chr11 137884127 137884632 -12898921 - L2 LINE L2 -509 2805 2252 195 359 23 8 chr11 137885119 137885247 -12898306 + MIR SINE MIR 52 181 -81 1066 261 58 15 chr11 137885251 137885596 -12897957 - MLT1A2 LTR MaLR 0 374 11 246 316 0 0 chr11 137885609 137885688 -12897865 + MIR SINE MIR 184 262 0 220 244 37 37 chr11 137886696 137886778 -12896775 + MIR SINE MIR 36 117 -145 312 297 55 16 chr11 137887187 137887315 -12896238 + L2 LINE L2 3180 3312 -1 307 130 0 0 chr11 137887525 137887571 -12895982 + MARNA DNA Mariner 199 244 -342 229 26 26 26 chr11 137888168 137888207 -12895346 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 227 289 183 10 chr11 137888217 137888321 -12895232 - L2 LINE L2 -13 3300 3179 393 380 63 22 chr11 137888619 137889080 -12894473 - L2 LINE L2 -964 2350 1871 185 342 0 0 chr11 137889491 137889567 -12893986 - MIR SINE MIR -36 226 151 2253 107 0 3 chr11 137889642 137889942 -12893611 + AluSg SINE Alu 1 299 -11 356 244 0 0 chr11 137889971 137890049 -12893504 + L2 LINE L2 3234 3311 -2 1732 194 0 0 chr11 137890889 137891173 -12892380 + AluJo SINE Alu 1 284 -28 1284 73 12 0 chr11 137891554 137891718 -12891835 - AluY SINE Alu -102 209 44 225 314 106 29 chr11 137893886 137894093 -12889460 - L2 LINE L2 -465 2849 2627 1274 263 117 69 chr11 137894348 137895366 -12888187 + L2 LINE L2 2130 3196 -117 1268 187 229 3 chr11 137896562 137896846 -12886707 - MER7A DNA MER2_type 0 346 1 204 296 56 0 chr11 137897531 137897602 -12885951 - MIR SINE MIR -26 236 162 290 269 48 29 chr11 137898301 137898405 -12885148 + MIR3 SINE MIR 90 195 -13 249 289 21 0 chr11 137900727 137900824 -12882729 + L2 LINE L2 1810 1908 -1406 1807 218 113 89 chr11 137900824 137901463 -12882090 - MLT1E1 LTR MaLR 0 654 1 235 161 16 81 chr11 137902222 137902284 -12881269 + L2 LINE L2 3251 3308 -5 269 321 89 43 chr11 137903020 137903344 -12880209 - L2 LINE L2 -338 2976 2638 568 276 142 40 chr11 137904503 137905128 -12878425 + L1ME3A LINE L1 5236 5951 -213 414 0 0 0 chr11 137905293 137905339 -12878214 + (TG)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chr11 137905378 137905401 -12878152 + AT_rich Low_complexity Low_complexity 1 23 0 317 287 0 19 chr11 137906438 137906546 -12877007 + MIR SINE MIR 78 183 -79 24 53 0 0 chr11 137907275 137907313 -12876240 + AT_rich Low_complexity Low_complexity 1 38 0 238 310 0 20 chr11 137907950 137908050 -12875503 + (CATATA)n Simple_repeat Simple_repeat 4 101 0 360 264 64 81 chr11 137908156 137908391 -12875162 - L2 LINE L2 -3 3310 3080 290 242 81 32 chr11 137910383 137910507 -12873046 - L2 LINE L2 -26 3287 3158 433 304 41 21 chr11 137910557 137910760 -12872793 - MIR SINE MIR -53 209 5 330 206 0 0 chr11 137911135 137911208 -12872345 + CT-rich Low_complexity Low_complexity 3 75 0 1907 97 63 60 chr11 137912029 137912328 -12871225 + AluSx SINE Alu 1 300 -12 1766 180 61 9 chr11 137914300 137914645 -12868908 + MLT1A1 LTR MaLR 3 365 0 246 279 0 0 chr11 137914667 137914728 -12868825 - MIR3 SINE MIR -35 173 113 887 126 0 15 chr11 137915739 137915866 -12867687 - AluSg/x SINE Alu -6 306 180 1728 117 0 0 chr11 137915866 137916097 -12867456 - AluSp SINE Alu -78 235 5 2274 184 19 9 chr11 137916425 137916853 -12866700 + MSTB LTR MaLR 1 426 0 227 306 0 0 chr11 137916944 137917006 -12866547 + (CA)n Simple_repeat Simple_repeat 2 63 0 191 36 36 0 chr11 137917790 137917818 -12865735 + (TAAAAA)n Simple_repeat Simple_repeat 1 29 0 256 263 20 99 chr11 137918112 137918264 -12865289 + MIR SINE MIR 48 187 -75 196 125 0 42 chr11 137918404 137918452 -12865101 + (GGAGAA)n Simple_repeat Simple_repeat 1 46 0 1451 217 89 27 chr11 137918842 137919289 -12864264 - MLT1D LTR MaLR 0 505 31 23 0 0 0 chr11 137919990 137920013 -12863540 + AT_rich Low_complexity Low_complexity 1 23 0 358 300 136 0 chr11 137921574 137921714 -12861839 + MLT1J LTR MaLR 109 267 -244 1777 141 88 16 chr11 137921801 137922121 -12861432 + MER61A LTR ERV1 1 343 0 920 309 50 31 chr11 137924143 137924564 -12858989 + LTR16A LTR ERVL 16 444 -6 372 297 50 22 chr11 137924935 137925244 -12858309 + L3 LINE CR1 669 1057 -520 2004 151 39 15 chr11 137925251 137925582 -12857971 - MER1B DNA MER1_type 0 339 1 269 289 13 0 chr11 137925612 137925688 -12857865 + L3 LINE CR1 1118 1194 -383 944 349 116 37 chr11 137926152 137927180 -12856373 + L3 LINE CR1 469 1577 0 249 280 13 28 chr11 137927206 137927387 -12856166 + L3 LINE CR1 1347 1567 -10 206 245 170 0 chr11 137927401 137927495 -12856058 + MIR SINE MIR 31 140 -68 505 323 8 0 chr11 137927600 137927733 -12855820 - MER58A DNA MER1_type 0 134 1 1010 226 0 35 chr11 137927742 137927968 -12855585 + MER20 DNA MER1_type 2 219 0 2416 76 20 0 chr11 137928281 137928583 -12854970 + AluSp SINE Alu 1 308 -5 234 321 94 0 chr11 137928714 137928820 -12854733 - MIR3 SINE MIR -41 167 52 3450 139 12 19 chr11 137929534 137930101 -12853452 + MER34B LTR ERV1 2 564 -1 259 237 101 59 chr11 137930595 137930764 -12852789 + L1ME3A LINE L1 5740 5915 -255 254 246 0 0 chr11 137930837 137930902 -12852651 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 1269 73 0 0 chr11 137931008 137931186 -12852367 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 838 224 57 0 chr11 137931792 137931984 -12851569 - MLT1E2 LTR MaLR 0 626 424 397 293 47 9 chr11 138132007 138132113 -12651440 + L2 LINE L2 3159 3268 -4 314 247 0 0 chr11 138132128 138132201 -12651352 - L1ME LINE L1 -370 5734 5662 338 323 100 53 chr11 138132209 138132509 -12651044 - L1ME LINE L1 -484 5620 5307 1951 160 70 22 chr11 138132519 138132931 -12650622 - MSTB1 LTR MaLR 0 432 1 891 66 0 84 chr11 138133086 138133253 -12650300 + L1P LINE L1 5256 5408 -757 335 360 41 41 chr11 138133525 138133767 -12649786 - L1ME LINE L1 -1373 4756 4515 264 315 22 0 chr11 138134171 138134260 -12649293 + MIR3 SINE MIR 104 194 -14 368 303 242 6 chr11 138134888 138135066 -12648487 + MIR SINE MIR 37 256 -6 247 265 180 26 chr11 138135781 138135970 -12647583 + L2 LINE L2 3030 3247 -25 337 292 15 39 chr11 138137766 138137896 -12645657 - MIR3 SINE MIR -9 199 73 270 277 79 10 chr11 138139090 138139191 -12644362 + MER5A DNA MER1_type 63 170 -19 256 280 40 10 chr11 138139471 138139571 -12643982 - MLT1H LTR MaLR -339 210 108 463 301 36 17 chr11 138140860 138141159 -12642394 - L1ME LINE L1 -1154 1336 948 346 261 176 21 chr11 138141595 138141783 -12641770 + L2 LINE L2 2282 2498 -816 430 230 0 0 chr11 138141923 138142010 -12641543 - L2 LINE L2 0 3313 3227 347 296 41 65 chr11 138142445 138142614 -12640939 + MIR3 SINE MIR 39 203 -5 270 284 0 12 chr11 138142731 138142812 -12640741 + MER5A DNA MER1_type 4 83 -106 631 288 48 22 chr11 138142915 138143144 -12640409 + L3 LINE CR1 1340 1574 -3 268 345 14 20 chr11 138144088 138144236 -12639317 + G-rich Low_complexity Low_complexity 6 152 0 * 434 267 0 92 chr11 138144153 138144348 -12639205 + (ATGGTG)n Simple_repeat Simple_repeat 4 180 0 181 302 19 0 chr11 138145446 138145499 -12638054 + L2 LINE L2 3218 3271 -1 342 0 0 0 chr11 138145617 138145655 -12637898 + (TC)n Simple_repeat Simple_repeat 2 39 0 342 0 0 0 chr11 138145654 138145692 -12637861 + (TG)n Simple_repeat Simple_repeat 1 38 0 293 344 114 0 chr11 138145708 138145839 -12637714 - MER117 DNA MER1_type -49 148 3 238 250 53 0 chr11 138147430 138147506 -12636047 + L2 LINE L2 3193 3272 0 426 318 23 64 chr11 138148096 138148316 -12635237 + MIR SINE MIR 22 232 -30 357 272 12 0 chr11 138148357 138148438 -12635115 + L2 LINE L2 3190 3271 -1 245 357 6 22 chr11 138150110 138150292 -12633261 + (TG)n Simple_repeat Simple_repeat 2 180 0 243 320 30 10 chr11 138150707 138150807 -12632746 + MIR3 SINE MIR 106 207 -1 256 282 27 36 chr11 138151072 138151182 -12632371 + L3b LINE CR1 1305 1413 -170 310 242 10 30 chr11 138153214 138153313 -12630240 + L1MC5 LINE L1 7827 7923 -38 1549 106 173 16 chr11 138153807 138154062 -12629491 + AluSg1 SINE Alu 1 295 -14 264 274 16 0 chr11 138154819 138154881 -12628672 - L3 LINE CR1 -1012 565 503 2656 59 0 0 chr11 138157081 138157386 -12626167 - AluY SINE Alu -6 305 1 1952 78 16 8 chr11 138158132 138158389 -12625164 - AluY SINE Alu -13 298 40 2139 128 0 3 chr11 138159077 138159374 -12624179 - AluSx SINE Alu -16 296 1 522 268 110 31 chr11 138159541 138159769 -12623784 - MIR SINE MIR -8 254 9 260 266 38 13 chr11 138160042 138160121 -12623432 + L2 LINE L2 3188 3268 -4 7099 37 18 2 chr11 138160187 138161557 -12621996 - L1PA5 LINE L1 0 6154 4767 2528 201 74 56 chr11 138161557 138162508 -12621045 - L1MEc LINE L1 -3215 3000 2073 * 2895 195 143 104 chr11 138162490 138162604 -12620949 - L1MD3 LINE L1 -325 7670 7562 1805 171 17 7 chr11 138162604 138162902 -12620651 + AluJo SINE Alu 1 301 -11 2895 195 143 104 chr11 138162902 138163081 -12620472 - L1MD3 LINE L1 -433 7562 7391 519 213 0 0 chr11 138163081 138163175 -12620378 - MLT1F1 LTR MaLR -473 94 1 2895 195 143 104 chr11 138163175 138163961 -12619592 - L1MD3 LINE L1 -604 7391 6451 548 171 7 93 chr11 138163961 138164064 -12619489 + L1M4 LINE L1 4080 4169 -1977 2189 108 20 7 chr11 138164064 138164194 -12619359 + AluSq SINE Alu 1 128 -185 198 0 0 0 chr11 138164194 138164216 -12619337 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2189 108 20 7 chr11 138164216 138164380 -12619173 + AluSq SINE Alu 128 299 -14 548 171 7 93 chr11 138164380 138164416 -12619137 + L1M4 LINE L1 4169 4207 -1939 1145 139 189 42 chr11 138165952 138166211 -12617342 - AluSg SINE Alu -2 298 2 1360 230 31 12 chr11 138166443 138166769 -12616784 - MLT2D LTR ERVL -1 413 82 279 0 0 0 chr11 138168808 138168839 -12614714 + (CA)n Simple_repeat Simple_repeat 1 31 0 249 83 0 0 chr11 138170189 138170225 -12613328 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 211 93 47 0 chr11 138172179 138172222 -12611331 + G-rich Low_complexity Low_complexity 3 47 0 232 151 0 27 chr11 138172318 138172391 -12611162 + C-rich Low_complexity Low_complexity 2 72 0 203 152 65 0 chr11 138172455 138172501 -12611052 + (CGGGG)n Simple_repeat Simple_repeat 2 50 0 30 0 0 0 chr11 138172681 138172711 -12610842 + GC_rich Low_complexity Low_complexity 1 30 0 315 0 0 0 chr11 138172773 138172808 -12610745 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 36 0 0 chr11 138175392 138175420 -12608133 + AT_rich Low_complexity Low_complexity 1 28 0 199 314 0 29 chr11 138176667 138176737 -12606816 - L2 LINE L2 0 3272 3205 671 197 0 0 chr11 138177429 138177551 -12606002 - MER3 DNA MER1_type -82 127 6 644 234 137 0 chr11 138177699 138177874 -12605679 + MIR SINE MIR 7 205 -57 193 277 0 0 chr11 138178765 138178812 -12604741 - MIR3 SINE MIR -50 158 112 781 164 0 13 chr11 138180090 138180242 -12603311 - L1MB2 LINE L1 -3 6168 6019 2272 39 0 3 chr11 138180242 138180526 -12603027 + L1PA5 LINE L1 5857 6139 -15 426 20 0 0 chr11 138180526 138180577 -12602976 + (TA)n Simple_repeat Simple_repeat 2 52 0 1431 179 13 12 chr11 138180583 138180885 -12602668 - L1MB3 LINE L1 -148 6035 5742 2269 117 0 0 chr11 138181632 138181930 -12601623 - AluSx SINE Alu -14 298 1 4909 157 36 8 chr11 138182812 138184014 -12599539 - L1PA16 LINE L1 -2 6164 4927 333 275 191 0 chr11 138184072 138184203 -12599350 - MIR SINE MIR -1 261 106 323 254 84 70 chr11 138185928 138186070 -12597483 + MIR SINE MIR 69 212 -50 342 277 129 35 chr11 138187888 138188090 -12595463 - MIR SINE MIR -14 248 28 1334 265 149 8 chr11 138188276 138188785 -12594768 + MLT1E LTR MaLR 1 581 -12 372 340 29 20 chr11 138190116 138190303 -12593250 + MIR SINE MIR 9 191 -62 251 307 10 50 chr11 138191548 138191649 -12591904 + L2 LINE L2 3176 3272 0 1648 183 3 7 chr11 138191895 138192184 -12591369 + AluJo SINE Alu 6 293 -19 504 316 77 0 chr11 138193762 138193930 -12589623 + MIR SINE MIR 34 214 -48 4508 145 40 4 chr11 138195361 138196085 -12587468 + L1PA16 LINE L1 5408 6157 -9 707 330 47 0 chr11 138196167 138196403 -12587150 - MIR SINE MIR -14 248 2 1340 232 34 88 chr11 138197210 138197767 -12585786 - MER74A LTR ERVL -31 527 1 206 402 0 0 chr11 138197989 138198076 -12585477 - MIR3 SINE MIR -115 93 7 646 250 56 22 chr11 138199369 138199549 -12584004 - MIR SINE MIR -32 230 45 283 333 233 23 chr11 138199732 138200218 -12583335 + L3 LINE CR1 775 1362 -215 222 333 0 0 chr11 138202107 138202254 -12581299 + (CA)n Simple_repeat Simple_repeat 1 147 0 313 241 211 23 chr11 138203076 138203209 -12580344 + MIR SINE MIR 4 161 -101 192 335 43 69 chr11 138203245 138203433 -12580120 - MIR SINE MIR -64 198 16 21 0 0 0 chr11 138205761 138205782 -12577771 + AT_rich Low_complexity Low_complexity 1 21 0 492 354 102 11 chr11 138206095 138206369 -12577184 - L2 LINE L2 0 3313 3015 858 327 170 10 chr11 138206557 138207163 -12576390 - L2 LINE L2 -547 2767 2065 1177 89 0 0 chr11 138212085 138212243 -12571310 + AluY SINE Alu 139 296 -15 492 129 0 0 chr11 138215016 138215086 -12568467 + AluJ/FLAM SINE Alu 1 70 -242 480 100 0 0 chr11 138215082 138215142 -12568411 + AluJ/FLAM SINE Alu 7 66 -246 * 1813 141 0 20 chr11 138215142 138215440 -12568113 + AluJo SINE Alu 7 298 -14 382 301 183 27 chr11 138216387 138216573 -12566980 + L1ME LINE L1 5317 5531 -590 233 228 13 25 chr11 138217007 138217086 -12566467 + L1ME4a LINE L1 6041 6118 -3 206 247 65 39 chr11 138217432 138217509 -12566044 + L2 LINE L2 2110 2188 -1126 316 294 0 22 chr11 138218629 138218721 -12564832 + MIR SINE MIR 159 248 -14 655 151 38 88 chr11 138219013 138219172 -12564381 - MIR SINE MIR -32 230 80 1969 153 0 10 chr11 138220450 138220757 -12562796 + AluSx SINE Alu 1 304 -8 281 204 22 102 chr11 138221316 138221453 -12562100 - MIR3 SINE MIR -82 126 1 219 222 0 0 chr11 138221748 138221793 -12561760 + (CCCCAG)n Simple_repeat Simple_repeat 4 48 0 448 313 161 59 chr11 138222098 138222606 -12560947 + HAL1 LINE L1 728 1287 -1220 1077 131 12 0 chr11 138223295 138223455 -12560098 - AluSq SINE Alu -19 294 133 2210 80 13 0 chr11 138223456 138223757 -12559796 - AluY SINE Alu -6 305 1 455 328 78 0 chr11 138223790 138223970 -12559583 + HAL1 LINE L1 2314 2507 0 666 329 168 6 chr11 138224744 138225231 -12558322 - L2 LINE L2 -369 2945 2380 276 356 112 11 chr11 138227546 138227734 -12555819 - MIR SINE MIR -13 249 43 528 265 179 0 chr11 138227781 138227932 -12555621 - MER5B DNA MER1_type 0 178 1 6626 218 58 50 chr11 138229163 138231204 -12552349 + L1MB3 LINE L1 777 2801 -3581 2028 123 0 20 chr11 138231204 138231504 -12552049 - AluSx SINE Alu -18 294 1 6626 218 58 50 chr11 138231504 138231683 -12551870 + L1MB3 LINE L1 2801 2977 -3405 2121 106 0 0 chr11 138231683 138231984 -12551569 + AluSq SINE Alu 1 301 -12 6626 218 58 50 chr11 138231984 138232986 -12550567 + L1MB3 LINE L1 2977 4116 -2266 2126 125 3 0 chr11 138232986 138233298 -12550255 + AluSq SINE Alu 1 313 0 6626 218 58 50 chr11 138233298 138233919 -12549634 + L1MB3 LINE L1 4116 4731 -1651 4776 190 14 8 chr11 138233910 138234788 -12548765 + L1M1 LINE L1 11 893 -6672 * 4044 182 48 1 chr11 138234801 138235586 -12547967 + L1MB3 LINE L1 5490 6311 -108 1669 213 15 6 chr11 138235596 138235929 -12547624 + MLT1A1 LTR MaLR 19 354 -11 591 204 0 0 chr11 138235936 138236049 -12547504 + L1MB3 LINE L1 6307 6419 0 25 31 0 0 chr11 138236064 138236096 -12547457 + AT_rich Low_complexity Low_complexity 1 32 0 892 158 57 17 chr11 138236275 138236452 -12547101 + MER53 DNA DNA 2 185 -4 21 0 0 0 chr11 138236600 138236621 -12546932 + AT_rich Low_complexity Low_complexity 1 21 0 2272 86 0 0 chr11 138238862 138239154 -12544399 + AluSg SINE Alu 1 292 -18 529 289 36 6 chr11 138240947 138241113 -12542440 + MARNA DNA Mariner 132 302 -284 30 0 0 0 chr11 138242175 138242205 -12541348 + GC_rich Low_complexity Low_complexity 1 30 0 262 353 14 24 chr11 138243178 138243347 -12540206 + MIR SINE MIR 18 184 -63 1208 194 153 3 chr11 138243675 138243969 -12539584 + MER58B DNA MER1_type 1 338 -3 195 129 0 0 chr11 138244319 138244350 -12539203 + (CA)n Simple_repeat Simple_repeat 2 32 0 261 237 34 17 chr11 138244809 138244868 -12538685 + MER5A DNA MER1_type 53 112 -77 446 216 226 35 chr11 138248012 138248211 -12535342 + L1MC3 LINE L1 5575 5811 -1997 417 250 26 64 chr11 138249802 138250140 -12533413 + L1MC3 LINE L1 5826 6121 -45 24 0 0 0 chr11 138250155 138250179 -12533374 + AT_rich Low_complexity Low_complexity 1 24 0 21 71 0 0 chr11 138252621 138252663 -12530890 + GC_rich Low_complexity Low_complexity 1 42 0 183 117 26 65 chr11 138252747 138252824 -12530729 + (CGGGG)n Simple_repeat Simple_repeat 1 74 0 228 204 11 57 chr11 138252844 138252932 -12530621 + G-rich Low_complexity Low_complexity 5 88 0 2001 115 14 3 chr11 138254402 138254697 -12528856 - AluSx SINE Alu -14 298 1 2465 40 7 0 chr11 138254723 138255023 -12528530 + AluY SINE Alu 1 302 -9 268 358 46 0 chr11 138255583 138255692 -12527861 + L3 LINE CR1 411 524 -1053 345 330 24 63 chr11 138256158 138256364 -12527189 - L2 LINE L2 -13 3300 3103 768 116 0 2 chr11 138256366 138256616 -12526937 + AluSx SINE Alu 1 299 -11 1754 250 218 51 chr11 138256618 138257720 -12525833 - L2 LINE L2 -200 3113 1716 2193 114 0 0 chr11 138257720 138258027 -12525526 + AluSq SINE Alu 1 307 -6 1754 250 218 51 chr11 138258027 138258271 -12525282 - L2 LINE L2 -1597 1716 1514 413 194 0 0 chr11 138258398 138258470 -12525083 - MER2 DNA MER2_type -7 338 267 454 118 26 0 chr11 138258477 138258553 -12525000 + L1MA3 LINE L1 6006 6083 -222 1586 104 0 63 chr11 138258564 138258659 -12524894 + L1MA3 LINE L1 6052 6151 -154 1955 85 33 0 chr11 138258659 138258929 -12524624 + AluSg SINE Alu 1 279 -31 1586 104 0 63 chr11 138258929 138259103 -12524450 + L1MA3 LINE L1 6151 6304 -1 1607 155 8 0 chr11 138259130 138259381 -12524172 - MER2 DNA MER2_type -92 253 1 37 90 0 0 chr11 138259653 138259753 -12523800 + AT_rich Low_complexity Low_complexity 1 100 0 1189 74 6 0 chr11 138261044 138261206 -12522347 - AluSx SINE Alu -18 294 132 327 49 0 0 chr11 138261206 138261247 -12522306 + (TG)n Simple_repeat Simple_repeat 1 41 0 883 132 0 0 chr11 138261259 138261388 -12522165 - AluSx SINE Alu -184 129 1 4126 165 12 31 chr11 138261465 138262234 -12521319 + L1MB7 LINE L1 5411 6164 -20 621 283 73 40 chr11 138262277 138262698 -12520855 - L1MEc LINE L1 -3622 2918 2520 4136 45 0 0 chr11 138262698 138263191 -12520362 - L1PA5 LINE L1 -3 6151 5659 621 283 73 40 chr11 138263191 138263274 -12520279 - L1MEc LINE L1 -4020 2520 2441 514 232 179 0 chr11 138263631 138263799 -12519754 + MER105 DNA DNA 7 204 0 260 253 43 44 chr11 138263808 138263974 -12519579 - L1MEc LINE L1 -900 2001 1841 216 166 129 0 chr11 138264076 138264144 -12519409 + MIR SINE MIR 107 143 -65 399 127 0 0 chr11 138264845 138264908 -12518645 + (CA)n Simple_repeat Simple_repeat 2 64 0 263 28 28 0 chr11 138264907 138264943 -12518610 + (GA)n Simple_repeat Simple_repeat 2 38 0 * 389 323 56 6 chr11 138265158 138265319 -12518234 - L1ME4a LINE L1 -275 5846 5678 2255 88 0 0 chr11 138265373 138265670 -12517883 + AluY SINE Alu 1 297 -14 867 274 56 14 chr11 138266500 138267258 -12516295 + L1MEc LINE L1 2272 3048 -3167 * 1279 200 31 14 chr11 138267255 138267545 -12516008 + L1ME3A LINE L1 1517 1811 -4573 851 216 96 14 chr11 138268433 138268651 -12514902 + L1MB5 LINE L1 5930 6165 -9 656 301 109 16 chr11 138268660 138269307 -12514246 + L1ME3A LINE L1 3197 3913 -2469 706 266 75 12 chr11 138269365 138269617 -12513936 + L1ME3A LINE L1 5966 6233 -173 330 257 71 53 chr11 138269627 138269740 -12513813 + L1ME3A LINE L1 6288 6402 -4 195 349 127 24 chr11 138270433 138270559 -12512994 + MIR3 SINE MIR 37 175 -33 1748 153 3 3 chr11 138272535 138272836 -12510717 + AluJo SINE Alu 5 305 -7 308 287 116 44 chr11 138273659 138273840 -12509713 - MIR SINE MIR -16 246 53 1563 90 80 0 chr11 138274299 138274511 -12509042 - MER30 DNA MER1_type 0 230 2 718 210 87 10 chr11 138275105 138275300 -12508253 - MER6B DNA MER2_type 0 210 1 515 301 28 37 chr11 138275684 138275910 -12507643 + MIR SINE MIR 10 232 -30 662 117 8 0 chr11 138275931 138276051 -12507502 + (TGG)n Simple_repeat Simple_repeat 1 121 0 526 306 96 20 chr11 138276249 138276448 -12507105 - MIR SINE MIR -34 228 15 322 343 59 42 chr11 138276549 138276835 -12506718 + L2 LINE L2 3023 3313 0 1212 279 146 38 chr11 138277561 138278545 -12505008 - HAL1 LINE L1 -607 1900 810 22 35 0 0 chr11 138279697 138279726 -12503827 + AT_rich Low_complexity Low_complexity 1 29 0 226 273 30 10 chr11 138279831 138279930 -12503623 + L1MEd LINE L1 1231 1331 -5041 362 313 198 10 chr11 138279967 138280159 -12503394 + L1MEd LINE L1 1265 1492 -4892 613 265 65 76 chr11 138280747 138281393 -12502160 + L1MEd LINE L1 2346 2984 -3398 608 298 79 37 chr11 138281383 138282155 -12501398 + L1MC4 LINE L1 6161 7062 -831 * 265 259 117 15 chr11 138282167 138282364 -12501189 + L1MEd LINE L1 2992 3208 -3174 396 274 115 29 chr11 138282371 138282787 -12500766 + L1MEd LINE L1 3234 3685 -2697 343 283 76 37 chr11 138282831 138283166 -12500387 + L1MCc LINE L1 63 753 -5669 1272 208 20 37 chr11 138283178 138283472 -12500081 + MLT1B LTR MaLR 1 289 -101 * 1794 132 5 18 chr11 138283467 138283490 -12500063 + MLT1B LTR MaLR 106 128 -262 2437 47 0 7 chr11 138283490 138283789 -12499764 + AluY SINE Alu 1 297 -14 1794 132 5 18 chr11 138283789 138284066 -12499487 + MLT1B LTR MaLR 128 390 0 1585 240 83 18 chr11 138284296 138285256 -12498297 + L1MCc LINE L1 815 1857 -4888 1150 219 10 24 chr11 138285254 138285299 -12498254 - L1M4 LINE L1 -2314 3832 3788 * 2776 82 3 0 chr11 138285299 138285653 -12497900 - THE1A LTR MaLR 0 355 1 1150 219 10 24 chr11 138285653 138285904 -12497649 - L1M4 LINE L1 -2358 3788 3540 805 211 92 9 chr11 138285899 138286127 -12497426 + L1MCc LINE L1 1863 2109 -4832 * 31 0 0 0 chr11 138286196 138286227 -12497326 + AT_rich Low_complexity Low_complexity 1 31 0 2344 87 3 0 chr11 138286236 138286545 -12497008 - AluSx SINE Alu -2 310 1 709 298 43 10 chr11 138286590 138287048 -12496505 + L1MCc LINE L1 2820 3263 -3678 560 155 181 0 chr11 138287077 138287193 -12496360 - AluJo SINE Alu -174 138 2 1349 84 0 0 chr11 138296051 138296230 -12487323 - AluY SINE Alu 0 311 133 2140 96 0 7 chr11 138296231 138296534 -12487019 - AluY SINE Alu -10 301 1 260 252 139 33 chr11 138296591 138296742 -12486811 + L1ME1 LINE L1 5993 6159 -7 268 237 103 21 chr11 138297121 138297218 -12486335 + L2 LINE L2 3209 3313 0 576 106 0 0 chr11 138299735 138299820 -12483733 - L1PA12 LINE L1 -1 6167 6083 4160 148 39 7 chr11 138300648 138301399 -12482154 + L1MA4 LINE L1 5512 6286 -14 529 254 104 21 chr11 138305739 138305932 -12477621 - MIR SINE MIR -8 254 46 306 0 0 0 chr11 138310956 138310990 -12472563 + (TG)n Simple_repeat Simple_repeat 2 35 0 2189 75 3 3 chr11 138312160 138312452 -12471101 + AluY SINE Alu 1 292 -19 22 35 0 0 chr11 138312468 138312497 -12471056 + AT_rich Low_complexity Low_complexity 1 29 0 1371 124 5 0 chr11 138312581 138312782 -12470771 - AluSq SINE Alu -110 203 2 213 256 223 25 chr11 138312886 138313007 -12470546 - MER5A DNA MER1_type 0 189 45 1581 148 14 11 chr11 138313089 138313367 -12470186 + AluJo SINE Alu 1 279 -33 723 217 130 56 chr11 138314457 138314848 -12468705 - L1MC5 LINE L1 -132 7829 7410 182 297 68 59 chr11 138315829 138315947 -12467606 + L2 LINE L2 3173 3291 -22 3763 170 113 40 chr11 138316052 138316426 -12467127 + L1MB7 LINE L1 4902 5247 -937 724 218 0 0 chr11 138316426 138316550 -12467003 + FLAM_A SINE Alu 4 127 -6 3763 170 113 40 chr11 138316550 138317332 -12466221 + L1MB7 LINE L1 5247 6168 -16 316 242 10 30 chr11 138318953 138319052 -12464501 + L1MC5 LINE L1 7827 7923 -38 1418 106 173 16 chr11 138319546 138319801 -12463752 + AluSg1 SINE Alu 1 295 -14 274 274 16 0 chr11 138320557 138320619 -12462934 - L3 LINE CR1 -1012 565 503 2495 59 0 0 chr11 138323622 138323927 -12459626 - AluY SINE Alu -6 305 1 216 258 31 72 chr11 138324664 138324677 -12458876 - L2 LINE L2 0 3313 3301 2100 110 7 3 chr11 138324677 138324976 -12458577 - AluSq SINE Alu -13 300 1 216 258 31 72 chr11 138324976 138325059 -12458494 - L2 LINE L2 -12 3301 3221 1110 110 43 0 chr11 138325064 138325227 -12458326 + AluSg/x SINE Alu 131 300 -10 203 200 0 25 chr11 138325229 138325269 -12458284 - L2 LINE L2 -84 3229 3191 2500 189 47 38 chr11 138325314 138326219 -12457334 + L1M4 LINE L1 4727 5625 -549 581 120 53 8 chr11 138326229 138326362 -12457191 - L1MCa LINE L1 -4890 1536 1398 3898 148 81 22 chr11 138326485 138327271 -12456282 - L1MCa LINE L1 -5007 1419 587 2039 218 52 14 chr11 138327276 138327781 -12455772 + L1 LINE L1 3796 4319 -1827 * 2809 186 25 16 chr11 138327780 138328329 -12455224 + L1MCa LINE L1 21 574 -5852 4263 242 78 38 chr11 138328349 138329378 -12454175 - L1M4c LINE L1 -4510 2136 1150 189 74 0 0 chr11 138329378 138329405 -12454148 + (TTG)n Simple_repeat Simple_repeat 1 27 0 4263 242 78 38 chr11 138329405 138330429 -12453124 - L1M4c LINE L1 -5496 1150 2 2060 119 3 3 chr11 138330892 138331185 -12452368 - AluSx SINE Alu -19 293 1 1373 160 15 77 chr11 138331389 138331489 -12452064 + MLT1B LTR MaLR 86 191 -199 2296 88 17 0 chr11 138331489 138331783 -12451770 + AluY SINE Alu 1 299 -12 1373 160 15 77 chr11 138331783 138332007 -12451546 + MLT1B LTR MaLR 191 390 0 1761 124 56 109 chr11 138332073 138332469 -12451084 - THE1C LTR MaLR 0 375 1 2108 131 0 3 chr11 138333192 138333489 -12450064 - AluSx SINE Alu -16 296 1 186 310 90 30 chr11 138333677 138333777 -12449776 - MIR3 SINE MIR -98 110 5 547 268 110 31 chr11 138336122 138336350 -12447203 + MIR SINE MIR 9 254 -8 2085 128 0 3 chr11 138336517 138336814 -12446739 + AluSx SINE Alu 1 296 -16 1991 73 8 4 chr11 138337502 138337761 -12445792 + AluY SINE Alu 40 299 -12 2435 199 53 93 chr11 138338034 138338861 -12444692 - L1ME1 LINE L1 -8 6158 5365 734 192 6 110 chr11 138338862 138338914 -12444639 - MER58A DNA MER1_type -178 163 107 3258 108 26 2 chr11 138338914 138339368 -12444185 + MER4C LTR ERV1 1 465 0 734 192 6 110 chr11 138339368 138339497 -12444056 - MER58A DNA MER1_type -234 107 1 2834 197 61 110 chr11 138339509 138339636 -12443917 - L1ME1 LINE L1 -1926 4220 4088 2036 121 0 17 chr11 138339636 138339926 -12443627 + AluSx SINE Alu 1 285 -27 2834 197 61 110 chr11 138339926 138341005 -12442548 - L1ME1 LINE L1 -2058 4088 3073 1128 209 5 0 chr11 138341011 138341231 -12442322 - AluJo SINE Alu -5 307 87 409 252 44 30 chr11 138341260 138341395 -12442158 - L1ME1 LINE L1 -3090 3056 2920 36737 47 9 1 chr11 138341414 138346703 -12436850 - L1PA5 LINE L1 -11 6143 821 390 267 133 0 chr11 138346704 138346839 -12436714 + MIR SINE MIR 48 200 -62 1393 189 54 0 chr11 138346840 138347100 -12436453 - AluJo SINE Alu -24 288 15 283 235 29 0 chr11 138347103 138347171 -12436382 + MIR SINE MIR 185 254 -8 205 362 0 21 chr11 138347347 138347441 -12436112 - MIR SINE MIR -101 107 16 585 301 114 9 chr11 138348030 138348249 -12435304 + MIR SINE MIR 2 243 -19 238 243 90 72 chr11 138348281 138348392 -12435161 - L2 LINE L2 -54 3218 3106 2205 78 0 14 chr11 138348994 138349276 -12434277 + AluSg SINE Alu 1 278 -32 195 100 0 0 chr11 138349278 138349308 -12434245 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 1849 172 0 7 chr11 138349680 138349977 -12433576 - AluJb SINE Alu -12 300 6 198 71 0 0 chr11 138351018 138351046 -12432507 + (TA)n Simple_repeat Simple_repeat 1 28 0 1810 142 44 7 chr11 138352631 138352926 -12430627 + AluSx SINE Alu 1 306 -6 1850 129 7 17 chr11 138353257 138353551 -12430002 - AluSc SINE Alu -18 291 1 437 235 160 82 chr11 138353982 138354263 -12429290 - L2 LINE L2 -2 3311 3009 186 281 0 35 chr11 138354266 138354323 -12429230 - L2 LINE L2 -250 3063 3009 181 294 39 0 chr11 138354332 138354383 -12429170 - L2 LINE L2 -252 3061 3009 184 238 100 38 chr11 138354387 138354467 -12429086 - L2 LINE L2 -219 3053 320 202 303 0 62 chr11 138354489 138354601 -12428952 - L2 LINE L2 -212 3101 2996 193 274 39 0 chr11 138354598 138354649 -12428904 - L2 LINE L2 -252 3061 3009 * 193 274 39 0 chr11 138354778 138354829 -12428724 - L2 LINE L2 -252 3061 3009 208 274 39 0 chr11 138354838 138354889 -12428664 - L2 LINE L2 -252 3061 3009 180 254 30 60 chr11 138354898 138354965 -12428588 - L2 LINE L2 -252 3061 2997 190 286 71 0 chr11 138354989 138355059 -12428494 - L2 LINE L2 -219 3053 2979 * 193 274 39 0 chr11 138355044 138355095 -12428458 - L2 LINE L2 -252 3061 3009 186 281 0 35 chr11 138355098 138355155 -12428398 - L2 LINE L2 -250 3063 3009 * 189 280 0 70 chr11 138355141 138355241 -12428312 - L2 LINE L2 -212 3101 3009 190 286 71 0 chr11 138355427 138355497 -12428056 - L2 LINE L2 -219 3053 2979 * 203 274 39 0 chr11 138355482 138355533 -12428020 - L2 LINE L2 -252 3061 3009 203 274 39 0 chr11 138355542 138355593 -12427960 - L2 LINE L2 -252 3061 3009 223 382 85 9 chr11 138355607 138355819 -12427734 - L2 LINE L2 -219 3053 2826 699 138 0 0 chr11 138356315 138356409 -12427144 - FRAM SINE Alu -18 158 65 396 59 0 0 chr11 138356415 138356466 -12427087 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 2127 98 0 14 chr11 138356466 138356751 -12426802 - AluY SINE Alu -30 281 1 316 100 0 20 chr11 138356755 138356805 -12426748 - FLAM SINE Alu -2 131 83 7971 29 8 0 chr11 138357537 138358655 -12424898 + L1PA4 LINE L1 5031 6155 0 1137 125 0 0 chr11 138359012 138359172 -12424381 + AluSg/x SINE Alu 135 294 -16 34 0 0 0 chr11 138359541 138359575 -12423978 + AT_rich Low_complexity Low_complexity 1 34 0 222 374 9 37 chr11 138359797 138359904 -12423649 + MIR SINE MIR 28 131 -77 989 199 90 0 chr11 138359925 138360126 -12423427 + MER20 DNA MER1_type 1 219 0 197 272 86 49 chr11 138360201 138360282 -12423271 - MIR SINE MIR -123 139 56 195 42 0 0 chr11 138360735 138360759 -12422794 + (TG)n Simple_repeat Simple_repeat 2 25 0 1587 178 44 4 chr11 138360863 138361167 -12422386 + AluJo SINE Alu 1 315 0 194 418 35 6 chr11 138361812 138361982 -12421571 - MIR SINE MIR -56 206 32 1452 206 212 8 chr11 138362369 138362846 -12420707 - MER69 DNA AcHobo -47 2479 1906 1303 253 106 15 chr11 138362875 138363282 -12420271 - MER69 DNA AcHobo -2082 444 1 286 206 0 16 chr11 138363396 138363459 -12420094 - MIR SINE MIR -17 245 184 215 227 0 0 chr11 138364642 138364686 -12418867 + GA-rich Low_complexity Low_complexity 1 44 0 2203 147 51 20 chr11 138365218 138365571 -12417982 - THE1B LTR MaLR 0 364 1 12407 75 2 55 chr11 138365571 138367239 -12416314 - THE1B-int LTR MaLR 0 1580 1 2267 124 60 26 chr11 138367243 138367591 -12415962 - THE1B LTR MaLR -4 360 1 208 271 0 0 chr11 138367663 138367711 -12415842 + L2 LINE L2 3234 3281 -32 214 182 0 0 chr11 138367962 138368006 -12415547 + A-rich Low_complexity Low_complexity 2 45 0 2286 99 0 3 chr11 138368920 138369213 -12414340 - AluSp SINE Alu -21 292 1 2282 116 0 0 chr11 138369550 138369853 -12413700 + AluSx SINE Alu 1 303 -9 2167 100 0 17 chr11 138370018 138370319 -12413234 + AluSx SINE Alu 1 296 -16 2182 123 29 87 chr11 138370320 138370501 -12413052 + MER4B LTR ERV1 21 211 -453 2051 136 3 3 chr11 138370501 138370802 -12412751 + AluSx SINE Alu 1 301 -11 2182 123 29 87 chr11 138370802 138370937 -12412616 + MER4B LTR ERV1 211 352 -312 1684 160 13 35 chr11 138370937 138371249 -12412304 - AluJb SINE Alu -2 310 6 2182 123 29 87 chr11 138371249 138371417 -12412136 + MER4B LTR ERV1 352 534 -130 306 0 0 0 chr11 138371978 138372012 -12411541 + (TG)n Simple_repeat Simple_repeat 2 35 0 2491 58 0 0 chr11 138373179 138373474 -12410079 + AluY SINE Alu 1 295 -16 202 281 11 67 chr11 138373903 138373992 -12409561 + L2 LINE L2 2566 2649 -665 232 192 0 19 chr11 138374017 138374069 -12409484 + L2 LINE L2 3263 3313 0 1652 159 61 28 chr11 138374163 138374489 -12409064 - MER1B DNA MER1_type 0 337 1 247 313 61 14 chr11 138374554 138374701 -12408852 + L2 LINE L2 2836 2989 -283 3867 96 23 61 chr11 138374701 138375396 -12408157 - MER4A LTR ERV1 0 779 1 604 288 87 32 chr11 138375627 138376123 -12407430 - L1M4 LINE L1 -3106 3040 2518 1351 111 126 184 chr11 138376437 138376853 -12406700 + MER83 LTR ERV1 1 389 -59 2284 120 3 0 chr11 138376853 138377162 -12406391 - AluSp SINE Alu -3 310 1 1351 111 126 184 chr11 138377162 138377212 -12406341 + MER83 LTR ERV1 389 440 -8 274 61 41 20 chr11 138377597 138377646 -12405907 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 317 303 67 67 chr11 138378052 138378112 -12405441 + L1MEd LINE L1 422 481 -5638 1795 122 51 0 chr11 138378112 138378367 -12405186 + AluSx SINE Alu 1 268 -44 317 303 67 67 chr11 138378367 138378633 -12404920 + L1MEd LINE L1 480 748 -5371 348 301 105 43 chr11 138378783 138379108 -12404445 + L1MEd LINE L1 737 1081 -5038 2116 121 0 10 chr11 138379111 138379409 -12404144 + AluSx SINE Alu 1 295 -17 668 253 72 13 chr11 138379519 138379756 -12403797 + L1MEd LINE L1 2755 3005 -3124 1421 179 172 149 chr11 138379777 138380126 -12403427 + L1MD3 LINE L1 6917 7256 -739 538 213 0 0 chr11 138380126 138380220 -12403333 + MLT1F1 LTR MaLR 1 94 -473 1421 179 172 149 chr11 138380220 138380399 -12403154 + L1MD3 LINE L1 7256 7429 -566 1781 171 17 7 chr11 138380399 138380697 -12402856 - AluJo SINE Alu -11 301 1 1421 179 172 149 chr11 138380697 138380811 -12402742 + L1MD3 LINE L1 7429 7670 -325 * 2970 194 88 66 chr11 138380810 138381744 -12401809 + L1ME1 LINE L1 2090 2977 -3238 7489 37 2 0 chr11 138381744 138383106 -12400447 + L1PA5 LINE L1 4767 6140 -14 2970 194 88 66 chr11 138383106 138383292 -12400261 + L1ME1 LINE L1 2977 3157 -3058 1131 209 5 0 chr11 138383292 138383512 -12400041 + AluJo SINE Alu 87 307 -5 2770 194 62 111 chr11 138383518 138384597 -12398956 + L1ME1 LINE L1 3142 4157 -2058 2060 121 0 17 chr11 138384597 138384887 -12398666 - AluSx SINE Alu -27 285 1 2770 194 62 111 chr11 138384887 138385014 -12398539 + L1ME1 LINE L1 4157 4289 -1926 729 192 6 110 chr11 138385026 138385155 -12398398 + MER58A DNA MER1_type 1 107 -234 3111 108 26 2 chr11 138385155 138385609 -12397944 - MER4C LTR ERV1 0 465 1 729 192 6 110 chr11 138385609 138385661 -12397892 + MER58A DNA MER1_type 107 163 -61 2400 200 53 90 chr11 138385662 138386486 -12397067 + L1ME1 LINE L1 5434 6227 -8 2059 62 8 4 chr11 138386759 138387018 -12396535 - AluY SINE Alu -12 299 40 2108 128 0 3 chr11 138387706 138388003 -12395550 - AluSx SINE Alu -16 296 1 480 268 110 31 chr11 138388170 138388398 -12395155 - MIR SINE MIR -8 254 9 239 279 38 13 chr11 138388671 138388750 -12394803 + L2 LINE L2 3188 3268 -4 7524 36 18 2 chr11 138388817 138390187 -12393366 - L1PA5 LINE L1 0 6154 4767 2731 192 94 48 chr11 138390187 138391124 -12392429 - L1MEc LINE L1 -3215 3000 2090 * 3082 194 145 106 chr11 138391123 138391237 -12392316 - L1MD3 LINE L1 -325 7670 7562 1780 171 17 7 chr11 138391237 138391535 -12392018 + AluJo SINE Alu 1 301 -11 3082 194 145 106 chr11 138391535 138391714 -12391839 - L1MD3 LINE L1 -433 7562 7391 538 213 0 0 chr11 138391714 138391808 -12391745 - MLT1F1 LTR MaLR -473 94 1 3082 194 145 106 chr11 138391808 138392594 -12390959 - L1MD3 LINE L1 -604 7391 6451 569 167 0 111 chr11 138392594 138392698 -12390855 + L1M4 LINE L1 4080 4165 -1981 2139 112 20 7 chr11 138392698 138392828 -12390725 + AluSq SINE Alu 1 128 -185 198 0 0 0 chr11 138392828 138392850 -12390703 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2139 112 20 7 chr11 138392850 138393014 -12390539 + AluSq SINE Alu 128 299 -14 569 167 0 111 chr11 138393014 138393053 -12390500 + L1M4 LINE L1 4165 4207 -1939 1276 136 190 39 chr11 138394588 138394846 -12388707 - AluSg SINE Alu -2 298 2 1424 227 31 12 chr11 138395078 138395404 -12388149 - MLT2D LTR ERVL -1 413 82 279 0 0 0 chr11 138397447 138397478 -12386075 + (CA)n Simple_repeat Simple_repeat 1 31 0 249 83 0 0 chr11 138398827 138398863 -12384690 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr11 138400788 138400810 -12382743 + AT_rich Low_complexity Low_complexity 1 22 0 2131 94 0 0 chr11 138400830 138401097 -12382456 + AluSq SINE Alu 34 300 -13 1319 123 98 16 chr11 138401112 138401326 -12382227 + L1P4 LINE L1 5254 5492 -674 2312 107 3 0 chr11 138401326 138401626 -12381927 + AluSx SINE Alu 1 301 -11 1319 123 98 16 chr11 138401626 138401655 -12381898 + L1P4 LINE L1 5492 5517 -649 533 155 58 19 chr11 138401655 138401758 -12381795 + FLAM_A SINE Alu 32 138 -4 700 271 87 59 chr11 138401803 138402006 -12381547 + L1MEd LINE L1 633 829 -5290 2438 90 3 0 chr11 138402006 138402318 -12381235 + AluSp SINE Alu 1 313 0 700 271 87 59 chr11 138402318 138402722 -12380831 + L1MEd LINE L1 829 1257 -4862 732 218 0 27 chr11 138402742 138402889 -12380664 + AluJo SINE Alu 5 147 -165 280 241 36 12 chr11 138402889 138402972 -12380581 + MLT1A2 LTR MaLR 289 373 -1 185 200 0 0 chr11 138403719 138403759 -12379794 + MIR SINE MIR 217 256 -6 253 147 59 44 chr11 138404335 138404403 -12379150 - L1ME4a LINE L1 -206 5915 5847 298 293 13 0 chr11 138404813 138404888 -12378665 + L2 LINE L2 3227 3302 -11 1975 119 31 7 chr11 138405537 138405823 -12377730 - AluSc SINE Alu -16 293 1 1906 109 63 14 chr11 138405852 138406137 -12377416 + AluSx SINE Alu 1 299 -13 484 290 26 0 chr11 138407150 138407305 -12376248 + MIR SINE MIR 103 261 -1 232 250 57 23 chr11 138408279 138408367 -12375186 + MIR SINE MIR 132 222 -40 2071 114 23 123 chr11 138411220 138411249 -12372304 + MER4B LTR ERV1 1 31 -633 2360 95 0 0 chr11 138411249 138411543 -12372010 + AluSg SINE Alu 1 294 -16 2071 114 23 123 chr11 138411543 138411726 -12371827 + MER4B LTR ERV1 31 231 -433 1784 144 14 11 chr11 138411726 138412011 -12371542 + AluSx SINE Alu 1 286 -26 2071 114 23 123 chr11 138412011 138412159 -12371394 + MER4B LTR ERV1 231 351 -313 1700 160 13 35 chr11 138412159 138412471 -12371082 - AluJb SINE Alu -2 310 6 2071 114 23 123 chr11 138412471 138412639 -12370914 + MER4B LTR ERV1 351 534 -130 231 36 0 0 chr11 138413203 138413231 -12370322 + (TG)n Simple_repeat Simple_repeat 2 29 0 2520 58 0 0 chr11 138414400 138414695 -12368858 + AluY SINE Alu 1 295 -16 218 192 0 19 chr11 138415238 138415290 -12368263 + L2 LINE L2 3263 3313 0 1558 156 61 28 chr11 138415384 138415710 -12367843 - MER1B DNA MER1_type 0 337 1 210 340 54 7 chr11 138415775 138415922 -12367631 + L2 LINE L2 2836 2989 -283 3864 96 23 61 chr11 138415922 138416617 -12366936 - MER4A LTR ERV1 0 779 1 552 284 89 34 chr11 138416848 138417344 -12366209 - L1M4 LINE L1 -3106 3040 2518 1365 111 126 184 chr11 138417658 138418074 -12365479 + MER83 LTR ERV1 1 389 -59 2304 120 3 0 chr11 138418074 138418383 -12365170 - AluSp SINE Alu -3 310 1 1365 111 126 184 chr11 138418383 138418433 -12365120 + MER83 LTR ERV1 389 440 -8 274 61 41 20 chr11 138418817 138418866 -12364687 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 322 303 67 67 chr11 138419271 138419331 -12364222 + L1MEd LINE L1 422 481 -5638 1813 122 51 0 chr11 138419331 138419586 -12363967 + AluSx SINE Alu 1 268 -44 322 303 67 67 chr11 138419586 138419852 -12363701 + L1MEd LINE L1 480 748 -5371 335 226 124 60 chr11 138420215 138420330 -12363223 + L1MEd LINE L1 968 1074 -5045 2139 123 0 10 chr11 138420330 138420632 -12362921 + AluSx SINE Alu 1 299 -13 335 226 124 60 chr11 138420632 138420750 -12362803 + L1MEd LINE L1 1074 1216 -4903 2342 86 0 3 chr11 138420761 138421062 -12362491 - AluY SINE Alu -11 300 1 230 305 17 8 chr11 138421251 138421369 -12362184 + HAL1 LINE L1 1513 1631 -876 2444 80 6 3 chr11 138421877 138422188 -12361365 - AluSx SINE Alu 0 312 1 1353 123 5 14 chr11 138422546 138422765 -12360788 - AluSg/x SINE Alu -13 299 83 194 317 49 16 chr11 138423465 138423588 -12359965 + MIR3 SINE MIR 71 197 -11 378 0 0 0 chr11 138423815 138423857 -12359696 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 2217 96 0 0 chr11 138423860 138424140 -12359413 - AluSx SINE Alu -32 280 1 1364 171 79 12 chr11 138424553 138424793 -12358760 - AluJo SINE Alu -56 256 1 2014 145 0 0 chr11 138424971 138425309 -12358244 - AluSg SINE Alu 0 310 1 1126 82 0 0 chr11 138425309 138425444 -12358109 - AluSq/x SINE Alu -177 135 1 343 254 156 27 chr11 138425574 138425798 -12357755 + LTR16A1 LTR ERVL 205 457 0 1682 201 3 0 chr11 138426071 138426374 -12357179 - AluJo SINE Alu -8 304 1 2164 101 25 0 chr11 138426381 138426667 -12356886 - AluSq SINE Alu -19 294 2 3932 101 20 0 chr11 138427915 138428458 -12355095 + MER41A LTR ERV1 1 554 0 2199 81 3 26 chr11 138428532 138428840 -12354713 - AluY SINE Alu -10 301 1 1637 138 48 41 chr11 138428842 138429133 -12354420 - AluJb SINE Alu -19 293 1 697 120 16 56 chr11 138429433 138429558 -12353995 + FLAM_C SINE Alu 23 142 -1 432 77 0 0 chr11 138429732 138429797 -12353756 + (CACG)n Simple_repeat Simple_repeat 3 67 0 1719 134 4 18 chr11 138430273 138430550 -12353003 - AluJb SINE Alu -19 293 21 1671 164 7 3 chr11 138430827 138431113 -12352440 - AluJo SINE Alu -25 287 1 544 165 70 0 chr11 138431718 138431833 -12351720 - L1MA4 LINE L1 -26 6274 6152 1798 135 51 0 chr11 138432034 138432308 -12351245 + AluSx SINE Alu 1 288 -24 246 169 51 0 chr11 138432308 138432426 -12351127 + (TA)n Simple_repeat Simple_repeat 1 124 0 188 261 0 0 chr11 138432734 138432780 -12350773 + MIR3 SINE MIR 157 202 -6 222 243 114 0 chr11 138434137 138434207 -12349346 + L3b LINE CR1 1316 1393 -190 204 254 0 18 chr11 138435883 138435938 -12347615 - MIR3 SINE MIR -2 206 153 301 213 113 0 chr11 138436026 138436106 -12347447 - MER117 DNA MER1_type -72 125 37 896 171 51 37 chr11 138437246 138437462 -12346091 - MER20 DNA MER1_type 0 219 1 412 256 64 0 chr11 138437483 138437608 -12345945 - MIR SINE MIR 0 262 130 294 291 111 8 chr11 138438262 138438379 -12345174 - MER91A DNA MER1_type -52 144 16 187 224 15 15 chr11 138440369 138440436 -12343117 + CT-rich Low_complexity Low_complexity 2 68 0 460 278 237 0 chr11 138440943 138441141 -12342412 + MIR SINE MIR 15 259 -3 204 322 25 50 chr11 138441137 138441258 -12342295 + MIR SINE MIR 75 192 -70 * 2371 32 0 0 chr11 138442091 138442404 -12341149 + AluY SINE Alu 1 313 0 297 293 26 35 chr11 138442517 138442633 -12340920 - L2 LINE L2 -8 3305 3191 353 237 35 18 chr11 138443160 138443274 -12340279 + MIR3 SINE MIR 87 202 -6 240 176 0 0 chr11 138443686 138443754 -12339799 + GA-rich Low_complexity Low_complexity 1 68 0 2186 95 3 0 chr11 138444409 138444705 -12338848 - AluSq SINE Alu -16 297 1 224 180 40 0 chr11 138445303 138445353 -12338200 + MIR SINE MIR 116 167 -95 478 285 22 14 chr11 138450377 138450558 -12332995 + MIR SINE MIR 34 212 -50 194 296 153 0 chr11 138451183 138451281 -12332272 + L2 LINE L2 3199 3311 -2 463 263 11 75 chr11 138451540 138451726 -12331827 - MIR3 SINE MIR -5 203 30 374 323 85 7 chr11 138452368 138452590 -12330963 + MIR SINE MIR 24 262 0 409 269 57 28 chr11 138453008 138453149 -12330404 + MIR SINE MIR 7 151 -111 262 401 6 29 chr11 138454694 138454866 -12328687 - MIR SINE MIR -32 230 63 293 341 0 47 chr11 138454952 138455081 -12328472 + MIR SINE MIR 117 239 -23 184 287 46 113 chr11 138455199 138455394 -12328159 + MIR SINE MIR 64 245 -17 2107 122 3 0 chr11 138456439 138456743 -12326810 - AluSx SINE Alu -7 305 1 194 258 183 21 chr11 138456883 138456976 -12326577 + MIR SINE MIR 119 226 -36 456 19 0 0 chr11 138457200 138457253 -12326300 + (CA)n Simple_repeat Simple_repeat 2 54 0 2186 113 3 0 chr11 138458543 138458853 -12324700 - AluSp SINE Alu -2 311 1 237 368 88 0 chr11 138459363 138459477 -12324076 - MIR SINE MIR -69 139 16 318 299 158 0 chr11 138460604 138460731 -12322822 + MIR3 SINE MIR 38 184 -24 214 274 14 14 chr11 138461303 138461376 -12322177 + MIR SINE MIR 81 153 -109 1141 144 0 0 chr11 138461458 138461632 -12321921 + FRAM SINE Alu 1 173 -3 372 299 58 29 chr11 138462357 138462494 -12321059 - MIR SINE MIR -108 154 14 349 230 62 35 chr11 138464196 138464309 -12319244 - MIR3 SINE MIR -7 201 86 960 81 110 0 chr11 138465416 138465552 -12318001 + AluSp SINE Alu 1 151 -162 776 215 45 18 chr11 138465618 138465696 -12317857 - L1MA8 LINE L1 0 6312 6238 1603 128 117 15 chr11 138465696 138465970 -12317583 - AluSg SINE Alu -8 302 1 776 215 45 18 chr11 138465970 138466108 -12317445 - L1MA8 LINE L1 -74 6238 6089 260 238 0 0 chr11 138466110 138466173 -12317380 - L1MA7 LINE L1 -235 6056 5994 1925 148 0 0 chr11 138466477 138466768 -12316785 - AluJo SINE Alu -21 291 1 23 0 0 0 chr11 138466777 138466800 -12316753 + AT_rich Low_complexity Low_complexity 1 23 0 200 231 0 58 chr11 138468050 138468102 -12315451 + L2 LINE L2 3265 3313 0 308 395 43 9 chr11 138468270 138468480 -12315073 - MIR SINE MIR 0 262 46 359 235 252 0 chr11 138468751 138468866 -12314687 - MIR SINE MIR -117 145 2 965 260 127 53 chr11 138468931 138469404 -12314149 + MLT1G1 LTR MaLR 88 595 0 357 109 0 0 chr11 138469479 138469534 -12314019 + (CCA)n Simple_repeat Simple_repeat 1 55 0 211 333 83 8 chr11 138469572 138469704 -12313849 - MIR SINE MIR -33 229 88 1630 162 20 20 chr11 138469817 138470114 -12313439 - AluJo SINE Alu -15 297 1 321 260 45 62 chr11 138470122 138470299 -12313254 - L1ME3A LINE L1 -8 6162 5989 1708 267 42 59 chr11 138470352 138470849 -12312704 - L1ME3A LINE L1 -193 5977 5494 1578 123 135 8 chr11 138470849 138471109 -12312444 - AluSg1 SINE Alu -7 302 10 1708 267 42 59 chr11 138471109 138471305 -12312248 - L1ME3A LINE L1 -676 5494 5296 303 177 0 0 chr11 138471370 138471432 -12312121 + (TG)n Simple_repeat Simple_repeat 2 63 0 22 0 0 0 chr11 138472709 138472731 -12310822 + AT_rich Low_complexity Low_complexity 1 22 0 1768 173 0 3 chr11 138472731 138473026 -12310527 - AluJo SINE Alu -18 294 1 2305 218 48 13 chr11 138473042 138473565 -12309988 + MLT1F LTR MaLR 1 541 -1 1889 151 0 0 chr11 138473691 138474010 -12309543 + AluSx SINE Alu 1 312 0 181 293 35 0 chr11 138474010 138474068 -12309485 + L2 LINE L2 3191 3250 -22 1258 175 79 12 chr11 138474188 138474428 -12309125 + AluJo SINE Alu 1 256 -56 2107 96 0 0 chr11 138474841 138475121 -12308432 + AluSx SINE Alu 1 280 -32 306 0 0 0 chr11 138475124 138475158 -12308395 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 221 355 66 16 chr11 138475193 138475314 -12308239 - MIR SINE MIR -50 212 86 254 377 45 7 chr11 138475385 138475539 -12308014 - MIR3 SINE MIR -11 197 38 22 0 0 0 chr11 138476468 138476490 -12307063 + AT_rich Low_complexity Low_complexity 1 22 0 304 253 25 0 chr11 138476728 138476807 -12306746 - MIR SINE MIR -74 188 108 299 344 88 0 chr11 138477107 138477232 -12306321 - L2 LINE L2 0 3313 3178 4085 131 97 92 chr11 138477375 138478733 -12304820 + pTR5 LTR ERV1 75 2436 -2 248 279 66 76 chr11 138478805 138479002 -12304551 - L2 LINE L2 -69 3203 3009 208 255 43 121 chr11 138479390 138479531 -12304022 + MIR SINE MIR 107 236 -26 486 263 65 43 chr11 138479535 138479721 -12303832 - MIR SINE MIR -3 259 70 471 194 61 0 chr11 138479942 138480040 -12303513 - MER81 DNA DNA -8 106 3 471 194 61 0 chr11 138480078 138480176 -12303377 - MER81 DNA DNA -8 106 3 471 194 61 0 chr11 138480214 138480312 -12303241 - MER81 DNA DNA -8 106 3 471 194 61 0 chr11 138480350 138480448 -12303105 - MER81 DNA DNA -8 106 3 471 194 61 0 chr11 138480486 138480584 -12302969 - MER81 DNA DNA -8 106 3 515 221 19 0 chr11 138480622 138480726 -12302827 - MER81 DNA DNA -8 106 1 445 242 67 0 chr11 138481485 138481605 -12301948 - MIR SINE MIR -65 143 16 1939 116 53 0 chr11 138481963 138482247 -12301306 + AluSq SINE Alu 9 307 -6 614 332 194 18 chr11 138483313 138483478 -12300075 - L2 LINE L2 -1 3312 3177 300 111 0 0 chr11 138483478 138483523 -12300030 + (TG)n Simple_repeat Simple_repeat 1 45 0 614 332 194 18 chr11 138483523 138483749 -12299804 - L2 LINE L2 -136 3177 2852 701 81 0 0 chr11 138483761 138483848 -12299705 + AluJ/FLAM SINE Alu 11 97 -215 303 328 47 16 chr11 138484185 138484313 -12299240 + MIR SINE MIR 84 215 -47 1920 137 30 0 chr11 138484671 138484970 -12298583 - AluJo SINE Alu -4 308 1 3076 151 31 14 chr11 138484970 138485553 -12298000 - L1MA8 LINE L1 -342 5949 5357 1786 203 18 72 chr11 138485636 138486027 -12297526 + MLT2D LTR ERVL 4 480 -40 232 157 39 0 chr11 138486031 138486082 -12297471 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 208 164 109 55 chr11 138486119 138486174 -12297379 - MIR SINE MIR -98 164 107 680 247 98 21 chr11 138486707 138486743 -12296810 - MER3 DNA MER1_type 0 209 177 1969 122 37 0 chr11 138486743 138487037 -12296516 - AluSx SINE Alu -7 305 1 680 247 98 21 chr11 138487037 138487194 -12296359 - MER3 DNA MER1_type -32 177 1 186 179 51 0 chr11 138487229 138487268 -12296285 - MIR SINE MIR -111 97 57 2571 51 0 0 chr11 138487778 138488089 -12295464 - L1PA5 LINE L1 -3 6151 5841 1330 158 12 35 chr11 138488815 138489069 -12294484 - L1PA11 LINE L1 0 6174 5927 217 289 13 26 chr11 138489791 138489867 -12293686 + L2 LINE L2 3189 3263 -9 377 372 56 29 chr11 138489891 138490265 -12293288 - L2 LINE L2 -61 3252 2869 1380 223 100 32 chr11 138490490 138490529 -12293024 - MLT2B1 LTR ERVL 0 554 519 339 89 0 0 chr11 138490529 138490585 -12292968 + (TG)n Simple_repeat Simple_repeat 2 57 0 1380 223 100 32 chr11 138490585 138491003 -12292550 - MLT2B1 LTR ERVL -35 519 1 217 372 98 6 chr11 138491165 138491329 -12292224 - MIR SINE MIR 0 262 84 313 121 15 15 chr11 138493590 138493656 -12289897 + CT-rich Low_complexity Low_complexity 3 68 0 236 326 11 11 chr11 138493864 138493956 -12289597 - MIR3 SINE MIR -50 158 67 193 281 207 0 chr11 138494889 138494971 -12288582 + MIR SINE MIR 90 188 -74 249 338 58 50 chr11 138496683 138497059 -12286494 + L2 LINE L2 2933 3311 -2 784 264 72 60 chr11 138497151 138497485 -12286068 + L1MD2 LINE L1 5772 6109 -250 333 339 73 52 chr11 138498892 138499140 -12284413 + L2 LINE L2 3020 3272 0 563 282 126 23 chr11 138500111 138500424 -12283129 + L2 LINE L2 2930 3284 -29 2378 170 25 7 chr11 138500424 138500829 -12282724 + MLT2D LTR ERVL 1 412 -2 563 282 126 23 chr11 138500829 138500863 -12282690 + L2 LINE L2 3284 3313 0 299 246 14 0 chr11 138501307 138501376 -12282177 - L2 LINE L2 0 3272 3203 1434 197 63 146 chr11 138501376 138501944 -12281609 - MLT1F LTR MaLR 0 542 22 981 264 96 22 chr11 138505682 138506099 -12277454 + LTR16A1 LTR ERVL 10 457 0 258 167 0 0 chr11 138506116 138506176 -12277377 + (TG)n Simple_repeat Simple_repeat 2 61 0 245 241 0 17 chr11 138506586 138506644 -12276909 + L2 LINE L2 3211 3267 -5 274 331 34 40 chr11 138509622 138509770 -12273783 - MIR SINE MIR -70 192 46 270 246 26 97 chr11 138509949 138510063 -12273490 - MER5A DNA MER1_type -65 124 19 662 299 98 0 chr11 138511575 138511809 -12271744 + MIR SINE MIR 6 262 0 302 265 75 26 chr11 138511792 138511930 -12271623 - MIR SINE MIR -78 130 30 * 278 288 27 45 chr11 138512039 138512150 -12271403 - MIR SINE MIR -16 246 138 198 191 0 0 chr11 138512870 138512917 -12270636 + (CACG)n Simple_repeat Simple_repeat 1 47 0 247 367 109 0 chr11 138515074 138515202 -12268351 + L2 LINE L2 3119 3260 -12 342 281 31 16 chr11 138515236 138515364 -12268189 - MIR3 SINE MIR -76 132 3 223 226 0 48 chr11 138515478 138515540 -12268013 + GA-rich Low_complexity Low_complexity 2 60 0 2254 97 0 3 chr11 138516426 138516735 -12266818 - AluSq SINE Alu 0 313 6 1540 184 10 24 chr11 138518410 138518703 -12264850 - AluJo SINE Alu -23 289 1 1791 194 118 69 chr11 138519234 138519724 -12263829 + MLT2B2 LTR ERVL 1 514 -1 1760 250 125 22 chr11 138519789 138519861 -12263692 + MLT1G1 LTR MaLR 5 68 -527 2267 96 0 0 chr11 138519861 138520154 -12263399 + AluSg SINE Alu 1 293 -17 1760 250 125 22 chr11 138520154 138520617 -12262936 + MLT1G1 LTR MaLR 68 595 0 821 161 62 0 chr11 138521552 138521713 -12261840 - FRAM SINE Alu -3 173 3 243 125 0 0 chr11 138522049 138522089 -12261464 + (TG)n Simple_repeat Simple_repeat 2 41 0 862 267 73 77 chr11 138523935 138524739 -12258814 - L1MEc LINE L1 -4247 2149 1349 893 159 13 88 chr11 138524763 138524989 -12258564 - AluJb SINE Alu -24 288 80 545 152 59 17 chr11 138525149 138525285 -12258268 + L1ME LINE L1 5292 5444 -720 2107 83 45 0 chr11 138525285 138525573 -12257980 + AluY SINE Alu 1 301 -10 2111 107 3 0 chr11 138525583 138525881 -12257672 + AluSg SINE Alu 1 299 -11 1853 123 0 0 chr11 138526239 138526507 -12257046 + AluSx SINE Alu 1 268 -44 329 313 72 46 chr11 138526511 138526773 -12256780 + L1MEd LINE L1 480 748 -5371 645 340 99 34 chr11 138526923 138527251 -12256302 + L1MEd LINE L1 737 1103 -5016 2044 121 0 10 chr11 138527251 138527548 -12256005 + AluSx SINE Alu 1 294 -18 645 340 99 34 chr11 138527548 138527663 -12255890 + L1MEd LINE L1 1103 1209 -4910 277 373 209 13 chr11 138528535 138528841 -12254712 + L3b LINE CR1 1194 1559 -24 584 329 76 4 chr11 138528857 138529094 -12254459 + MIR SINE MIR 9 262 0 416 399 6 0 chr11 138530800 138531091 -12252462 + (TG)n Simple_repeat Simple_repeat 1 292 0 225 0 0 0 chr11 138532724 138532749 -12250804 + (GGA)n Simple_repeat Simple_repeat 2 26 0 223 341 0 0 chr11 138533835 138533926 -12249627 + C-rich Low_complexity Low_complexity 2 92 0 192 152 0 0 chr11 138534268 138534301 -12249252 + (TG)n Simple_repeat Simple_repeat 1 33 0 387 0 0 0 chr11 138534951 138534994 -12248559 + (CA)n Simple_repeat Simple_repeat 2 44 0 405 39 0 0 chr11 138535511 138535562 -12247991 + (CA)n Simple_repeat Simple_repeat 2 52 0 296 259 14 29 chr11 138535569 138535708 -12247845 + (CAGAGA)n Simple_repeat Simple_repeat 4 140 0 294 192 0 31 chr11 138535728 138535858 -12247695 + (CAGA)n Simple_repeat Simple_repeat 3 128 0 288 0 0 0 chr11 138535871 138535903 -12247650 + (GA)n Simple_repeat Simple_repeat 1 32 0 201 161 0 0 chr11 138537102 138537133 -12246420 + polypyrimidine Low_complexity Low_complexity 1 31 0 245 416 0 9 chr11 138539832 138539945 -12243608 - L2 LINE L2 -4 3268 3157 191 365 0 0 chr11 138540355 138540418 -12243135 - L2 LINE L2 -15 3298 3236 385 271 140 32 chr11 138541196 138541419 -12242134 + MIR SINE MIR 14 261 -1 189 246 213 0 chr11 138541544 138541605 -12241948 - L2 LINE L2 -2 3311 3238 288 313 42 36 chr11 138541694 138541860 -12241693 - L2 LINE L2 -221 3051 2885 229 290 11 44 chr11 138543244 138543427 -12240126 + (CGTG)n Simple_repeat Simple_repeat 3 179 0 893 318 100 18 chr11 138544083 138544552 -12239001 - L2 LINE L2 -1 3312 2798 215 284 181 32 chr11 138544666 138544821 -12238732 - MIR SINE MIR -52 210 33 1629 190 0 7 chr11 138549863 138550147 -12233406 - AluJo SINE Alu -30 282 1 216 178 44 22 chr11 138550642 138550777 -12232776 + (TCTG)n Simple_repeat Simple_repeat 1 138 0 393 154 29 15 chr11 138550835 138550971 -12232582 + (TCTG)n Simple_repeat Simple_repeat 1 138 0 588 157 13 7 chr11 138550992 138551145 -12232408 + (TCTG)n Simple_repeat Simple_repeat 1 154 0 254 381 74 25 chr11 138552947 138553191 -12230362 - MIR SINE MIR 0 262 7 1418 173 47 7 chr11 138554118 138554396 -12229157 - L1MA3 LINE L1 0 6305 6017 679 190 28 0 chr11 138558196 138558338 -12225215 - MER63A DNA MER1_type -1 209 64 241 287 131 8 chr11 138559869 138559991 -12223562 + MIR3 SINE MIR 49 185 -23 195 361 84 0 chr11 138560166 138560285 -12223268 + MIR SINE MIR 17 145 -63 1002 94 0 0 chr11 138561684 138561811 -12221742 + FLAM_C SINE Alu 1 127 -6 3261 167 17 17 chr11 138564947 138566168 -12217385 - L1PB1 LINE L1 -325 5826 4613 8405 90 3 1 chr11 138566294 138567596 -12215957 + L1P LINE L1 1653 2956 -3190 4836 89 14 22 chr11 138567742 138568795 -12214758 - L1P3 LINE L1 -552 5620 4579 363 125 100 12 chr11 138568936 138569016 -12214537 - MER4B LTR ERV1 -523 87 1 2305 271 102 32 chr11 138569016 138569972 -12213581 - ERVL LTR ERVL -933 4831 3809 396 0 0 0 chr11 138570557 138570601 -12212952 + (TG)n Simple_repeat Simple_repeat 2 45 0 191 313 82 41 chr11 138570965 138571112 -12212441 - MIR SINE MIR -14 248 96 2845 204 35 12 chr11 138571679 138572750 -12210803 - HERVE LTR ERV1 -4940 2873 1700 232 295 16 33 chr11 138573739 138573861 -12209692 + CT-rich Low_complexity Low_complexity 6 125 0 1778 160 0 14 chr11 138574533 138574827 -12208726 + AluJb SINE Alu 1 290 -22 947 301 93 11 chr11 138575145 138575521 -12208032 + MLT1I LTR MaLR 1 407 -2 2603 87 3 26 chr11 138575924 138576333 -12207220 - L1P3 LINE L1 -5690 771 371 501 280 83 21 chr11 138576315 138576508 -12207045 - L1ME LINE L1 -5608 462 258 * 1796 168 0 13 chr11 138576523 138576821 -12206732 - AluSg SINE Alu -16 294 1 1234 109 45 23 chr11 138576826 138577046 -12206507 + L1M1 LINE L1 3132 3356 -4209 21 57 0 0 chr11 138577425 138577460 -12206093 + AT_rich Low_complexity Low_complexity 1 35 0 1624 143 118 4 chr11 138577463 138577742 -12205811 + AluSx SINE Alu 1 311 -1 273 349 11 48 chr11 138578071 138578260 -12205293 - MER5A DNA MER1_type -6 183 2 304 235 29 0 chr11 138578411 138578479 -12205074 - Charlie8 DNA MER1_type -1000 1417 1348 5739 177 8 60 chr11 138578672 138580035 -12203518 - L1M1 LINE L1 -743 5403 4105 546 294 99 6 chr11 138580037 138580350 -12203203 + L1 LINE L1 2767 3108 -3038 408 371 52 17 chr11 138582710 138583001 -12200552 - L1M3b LINE L1 -5771 510 210 1007 233 10 0 chr11 138583216 138583422 -12200131 + Harlequin LTR ERV1 177 384 -6512 605 134 268 16 chr11 138583509 138583636 -12199917 + Harlequin LTR ERV1 525 683 -6213 1704 205 17 0 chr11 138584077 138584379 -12199174 + Harlequin LTR ERV1 658 964 -6849 253 279 146 73 chr11 138584488 138584528 -12199025 - L1M3de LINE L1 -5755 898 862 1510 197 0 14 chr11 138584528 138584807 -12198746 + AluSc SINE Alu 14 288 -21 253 279 146 73 chr11 138584807 138584999 -12198554 - L1M3de LINE L1 -5791 862 649 1335 244 35 45 chr11 138585010 138585436 -12198117 - MSTB LTR MaLR -4 422 1 304 266 98 80 chr11 138585776 138586164 -12197389 - SST1 Satellite centromeric -962 601 207 751 142 0 15 chr11 138587624 138587758 -12195795 + FLAM_C SINE Alu 2 133 0 420 288 50 0 chr11 138589102 138589241 -12194312 + L2 LINE L2 33 178 -3136 493 298 19 37 chr11 138589302 138589517 -12194036 + L2 LINE L2 3103 3313 0 292 272 44 122 chr11 138589691 138590134 -12193419 + MLT1I LTR MaLR 1 409 0 192 304 98 29 chr11 138590419 138590521 -12193032 - L2 LINE L2 -2 3311 3203 387 239 115 9 chr11 138590755 138590868 -12192685 - MIR SINE MIR -59 203 79 2612 218 63 9 chr11 138591225 138591793 -12191760 - MER90 LTR ERV1 -15 599 1 245 286 82 88 chr11 138591905 138592087 -12191466 - L2 LINE L2 -153 3160 2980 334 172 0 0 chr11 138592923 138592981 -12190572 + L1MC4 LINE L1 6610 6667 -1375 1309 141 51 203 chr11 138592990 138593521 -12190032 + LTR1 LTR ERV1 2 451 -334 1922 190 16 19 chr11 138595037 138595099 -12188454 - MLT1A1 LTR MaLR 0 365 304 589 88 0 0 chr11 138595099 138595179 -12188374 + MADE1 DNA Mariner 1 80 0 1922 190 16 19 chr11 138595179 138595480 -12188073 - MLT1A1 LTR MaLR -61 304 3 261 292 181 1 chr11 138596120 138596236 -12187317 + MIR3 SINE MIR 63 199 -9 427 284 45 75 chr11 138596276 138596568 -12186985 + L1ME LINE L1 21 303 -5767 251 298 107 38 chr11 138597283 138597414 -12186139 + L2 LINE L2 3156 3295 -18 2225 106 0 0 chr11 138597419 138597712 -12185841 + AluSq SINE Alu 16 308 -5 2073 157 56 17 chr11 138597714 138598179 -12185374 - MLT2A2 LTR ERVL -66 488 1 338 255 273 42 chr11 138598387 138598673 -12184880 - MLT1J LTR MaLR -50 461 110 314 222 28 0 chr11 138598743 138598815 -12184738 - MLT1L LTR MaLR -537 78 5 210 301 44 44 chr11 138599044 138599157 -12184396 - MER5A DNA MER1_type -37 152 40 268 323 60 52 chr11 138601459 138601710 -12181843 + SST1 Satellite centromeric 349 601 -962 1012 253 10 55 chr11 138602429 138602741 -12180812 - ERVL LTR ERVL -3322 2442 2145 1893 304 38 18 chr11 138602930 138603486 -12180067 - MLT2E LTR ERVL -59 569 3 1301 330 65 48 chr11 138603530 138604020 -12179533 - L2 LINE L2 -1216 2098 1585 899 149 0 0 chr11 138604020 138604174 -12179379 - L1MA4 LINE L1 -2 6298 6145 1301 330 65 48 chr11 138604174 138604538 -12179015 - L2 LINE L2 -1729 1585 1229 1729 210 5 22 chr11 138604544 138604811 -12178742 + L1 LINE L1 4020 4279 -1867 2167 134 0 0 chr11 138604811 138605110 -12178443 + AluSq SINE Alu 1 299 -14 1729 210 5 22 chr11 138605110 138605242 -12178311 + L1 LINE L1 4279 4412 -1734 4901 241 66 13 chr11 138605423 138606315 -12177238 - L1M4 LINE L1 -1198 4772 3761 2041 195 29 0 chr11 138606315 138606694 -12176859 - MLT1B LTR MaLR 0 390 1 4901 241 66 13 chr11 138606694 138607364 -12176189 - L1M4 LINE L1 -2209 3761 3128 4134 275 33 40 chr11 138607550 138609327 -12174226 + L1P LINE L1 1473 3236 -2910 293 133 0 0 chr11 138609536 138609581 -12173972 - THE1C LTR MaLR -330 45 1 768 276 88 80 chr11 138609829 138610480 -12173073 - L1M4 LINE L1 -5235 656 1 216 0 0 0 chr11 138610528 138610552 -12173001 + (ATG)n Simple_repeat Simple_repeat 2 25 0 224 294 15 0 chr11 138610552 138610620 -12172933 - MIR SINE MIR -123 139 71 324 0 0 0 chr11 138610685 138610721 -12172832 + (TG)n Simple_repeat Simple_repeat 2 37 0 990 201 54 0 chr11 138611032 138611236 -12172317 + MER20 DNA MER1_type 5 219 0 471 277 80 72 chr11 138612697 138613087 -12170466 + SST1 Satellite centromeric 209 601 -962 215 24 0 98 chr11 138614002 138614043 -12169510 + (TG)n Simple_repeat Simple_repeat 1 37 0 349 287 65 53 chr11 138615241 138615488 -12168065 + SST1 Satellite centromeric 352 601 -962 374 326 54 42 chr11 138616434 138616860 -12166693 + SST1 Satellite centromeric 94 524 -1039 211 270 22 0 chr11 138617815 138617904 -12165649 + (TG)n Simple_repeat Simple_repeat 2 92 0 234 301 39 26 chr11 138619156 138619312 -12164241 + SST1 Satellite centromeric 444 601 -962 1610 136 19 8 chr11 138622914 138623171 -12160382 + AluJb SINE Alu 45 304 -8 404 287 105 6 chr11 138624140 138624321 -12159232 + MIR SINE MIR 56 254 -8 213 245 20 0 chr11 138627458 138627507 -12156046 - MIR SINE MIR -103 159 110 950 370 51 30 chr11 138627705 138628515 -12155038 + L2 LINE L2 2211 3043 -270 292 263 13 13 chr11 138628813 138628889 -12154664 + L2 LINE L2 3232 3307 -6 301 165 0 139 chr11 138629782 138629861 -12153692 + L1MC4 LINE L1 6636 6703 -1339 657 83 74 15 chr11 138635853 138636193 -12147360 + (TG)n Simple_repeat Simple_repeat 1 360 0 241 100 89 0 chr11 138636206 138636296 -12147257 + (TG)n Simple_repeat Simple_repeat 2 99 0 246 89 36 18 chr11 138636419 138636475 -12147078 + (TG)n Simple_repeat Simple_repeat 1 57 0 692 36 83 12 chr11 138636488 138636656 -12146897 + (TG)n Simple_repeat Simple_repeat 1 180 0 207 271 0 0 chr11 138641018 138641088 -12142465 + (TG)n Simple_repeat Simple_repeat 1 70 0 500 331 35 50 chr11 138642156 138642473 -12141080 - L2 LINE L2 -1 3312 3001 235 228 0 35 chr11 138643635 138643692 -12139861 + CT-rich Low_complexity Low_complexity 1 55 0 2439 42 0 23 chr11 138644421 138644730 -12138823 + AluY SINE Alu 1 302 -9 1229 303 137 38 chr11 138645493 138646498 -12137055 - L2 LINE L2 -82 3231 2144 369 224 149 0 chr11 138646526 138646633 -12136920 - L2 LINE L2 -1408 1906 1784 859 284 84 54 chr11 138646737 138647163 -12136390 + LTR16A1 LTR ERVL 18 456 -1 1874 328 51 38 chr11 138647179 138648467 -12135086 + HERV16 LTR ERVL 37 1341 -3655 262 317 92 18 chr11 138648655 138648819 -12134734 + L1M4 LINE L1 4182 4357 -1789 521 229 139 18 chr11 138649161 138649327 -12134226 - L1MEd LINE L1 -5918 201 16 345 315 100 30 chr11 138649381 138649581 -12133972 - L1MDa LINE L1 -3907 2633 2420 850 291 107 9 chr11 138651330 138651749 -12131804 - LTR33 LTR ERVL -61 460 1 182 392 25 25 chr11 138651803 138651923 -12131630 - L2 LINE L2 -1359 1955 1836 383 323 239 20 chr11 138652028 138652384 -12131169 + MLT1H LTR MaLR 13 446 -103 253 269 39 28 chr11 138652550 138652732 -12130821 + L1M4 LINE L1 4982 5165 -981 26549 122 15 76 chr11 138652732 138656109 -12127444 + L1PA3 LINE L1 3 2989 -3157 21030 26 0 1 chr11 138656109 138659364 -12124189 + L1PA3 LINE L1 2923 6176 0 26549 122 15 76 chr11 138659364 138660901 -12122652 + L1PA3 LINE L1 2989 4618 -1528 476 231 112 30 chr11 138660902 138661036 -12122517 - MLT1F LTR MaLR -258 284 140 198 0 0 0 chr11 138661039 138661061 -12122492 + (CA)n Simple_repeat Simple_repeat 2 23 0 1862 155 53 0 chr11 138661061 138661384 -12122169 - MER2 DNA MER2_type -5 340 1 2921 255 68 35 chr11 138661395 138661976 -12121577 + L1M4 LINE L1 3792 4353 -1793 1513 181 29 0 chr11 138661976 138662252 -12121301 + AluJo SINE Alu 1 284 -28 309 26 0 0 chr11 138662252 138662290 -12121263 + (CA)n Simple_repeat Simple_repeat 2 39 0 2921 255 68 35 chr11 138662290 138663023 -12120530 + L1M4 LINE L1 4352 5150 -996 12223 169 15 12 chr11 138663027 138665093 -12118460 - ERVL-C1 LTR ERVL -538 5226 3154 8563 235 34 14 chr11 138665085 138666420 -12117133 - ERVL-C1 LTR ERVL -3141 2623 1116 * 2037 133 45 30 chr11 138666420 138666752 -12116801 - MER1B DNA MER1_type 0 337 1 8563 235 34 14 chr11 138666752 138667374 -12116179 - ERVL-C1 LTR ERVL -4648 1116 508 1821 220 6 11 chr11 138667388 138667747 -12115806 + MLT1A1 LTR MaLR 1 357 -8 1470 250 55 13 chr11 138667755 138668029 -12115524 - ERVL-C1 LTR ERVL -5224 540 279 1899 162 38 29 chr11 138668029 138668308 -12115245 - MER7A DNA MER2_type -2692 346 64 1527 183 56 0 chr11 138668308 138668422 -12115131 + AluJo SINE Alu 1 107 -205 183 42 0 0 chr11 138668422 138668446 -12115107 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1527 183 56 0 chr11 138668446 138668615 -12114938 + AluJo SINE Alu 107 300 -12 1899 162 38 29 chr11 138668615 138668680 -12114873 - MER7A DNA MER2_type -2974 64 1 1470 250 55 13 chr11 138668680 138668885 -12114668 - ERVL-C1 LTR ERVL -5485 279 4 1620 208 21 21 chr11 138669072 138669404 -12114149 - MLT2C1 LTR ERVL -40 357 26 761 304 26 20 chr11 138669424 138669776 -12113777 + L1MEc LINE L1 1465 1818 -4578 * 8171 216 30 40 chr11 138669759 138671325 -12112228 + L1MEc LINE L1 2627 4207 -2008 1807 145 0 0 chr11 138671325 138671645 -12111908 + AluSx SINE Alu 1 320 0 8171 216 30 40 chr11 138671645 138671998 -12111555 + L1MEc LINE L1 4207 4524 -1691 2648 141 21 2 chr11 138671998 138672418 -12111135 + MSTA LTR MaLR 1 428 0 8171 216 30 40 chr11 138672418 138672762 -12110791 + L1MEc LINE L1 4524 4870 -1345 1714 117 11 19 chr11 138674453 138674719 -12108834 - AluSq SINE Alu -49 264 1 4336 195 14 44 chr11 138674919 138675772 -12107781 + L1MB3 LINE L1 4852 5647 -605 1736 143 0 28 chr11 138675772 138676058 -12107495 + AluJo SINE Alu 3 280 -32 4336 195 14 44 chr11 138676058 138676645 -12106908 + L1MB3 LINE L1 5647 6250 -2 2272 250 68 20 chr11 138676707 138677783 -12105770 + L1MEc LINE L1 1868 2941 -3274 454 206 53 38 chr11 138677833 138677964 -12105589 + L1M4 LINE L1 4982 5114 -1032 3462 157 78 9 chr11 138677991 138678623 -12104930 + MER44D DNA MER2_type 59 605 0 971 242 77 48 chr11 138678624 138679128 -12104425 + L1MEc LINE L1 2943 3461 -2754 * 2232 208 82 35 chr11 138679127 138679866 -12103687 + L1MB7 LINE L1 4568 5341 -805 272 229 21 10 chr11 138679879 138679975 -12103578 + (TA)n Simple_repeat Simple_repeat 1 97 0 334 204 11 43 chr11 138679975 138680068 -12103485 + L1MC4 LINE L1 6617 6706 -1336 194 141 39 13 chr11 138680093 138680171 -12103382 + (TA)n Simple_repeat Simple_repeat 2 81 0 669 216 87 14 chr11 138680215 138680423 -12103130 + L1MB7 LINE L1 5378 5600 -566 * 6743 190 43 24 chr11 138680417 138683000 -12100553 + L1MB7 LINE L1 3610 6244 -9 241 176 167 39 chr11 138683016 138683118 -12100435 + L1MB7 LINE L1 5598 5712 -472 * 15271 191 37 21 chr11 138683117 138685113 -12098440 + L1PB1 LINE L1 6 1970 -4897 1835 143 10 13 chr11 138685113 138685249 -12098304 + AluSx SINE Alu 1 136 -176 233 57 29 0 chr11 138685249 138685284 -12098269 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1835 143 10 13 chr11 138685284 138685454 -12098099 + AluSx SINE Alu 136 306 -6 15271 191 37 21 chr11 138685454 138690043 -12093510 + L1PB1 LINE L1 1970 6866 -1 1672 199 61 42 chr11 138690067 138690540 -12093013 + L1MB7 LINE L1 5691 6172 -12 1389 272 27 9 chr11 138690544 138691135 -12092418 + L1MC4a LINE L1 5152 5750 -412 246 257 119 10 chr11 138691138 138691183 -12092370 + L1ME3 LINE L1 6037 6076 -86 393 22 0 0 chr11 138691183 138691229 -12092324 + (TG)n Simple_repeat Simple_repeat 2 47 0 246 257 119 10 chr11 138691229 138691284 -12092269 + L1ME3 LINE L1 6076 6148 -14 235 252 183 43 chr11 138691295 138691525 -12092028 + L1MC4a LINE L1 5939 6200 -1608 262 170 19 19 chr11 138691581 138691634 -12091919 + MLT1J1 LTR MaLR 67 119 -327 268 325 56 0 chr11 138692019 138692145 -12091408 - MIR3 SINE MIR -14 194 62 2231 101 56 0 chr11 138692146 138692676 -12090877 - MER51A LTR ERV1 0 634 3 438 207 200 27 chr11 138692698 138692848 -12090705 - MER66A LTR ERV1 -53 425 250 304 287 50 0 chr11 138696690 138696791 -12086762 - MER5A DNA MER1_type -75 114 9 299 318 53 8 chr11 138697087 138697219 -12086334 - MIR SINE MIR -7 255 118 315 216 178 21 chr11 138697225 138697365 -12086188 + MIR SINE MIR 33 206 -56 3932 187 65 53 chr11 138698053 138698454 -12085099 - L1MCb LINE L1 -4579 2166 1771 213 39 0 0 chr11 138698454 138698480 -12085073 + (TTA)n Simple_repeat Simple_repeat 2 27 0 3932 187 65 53 chr11 138698480 138698756 -12084797 - L1MCb LINE L1 -4974 1771 1500 7657 30 0 0 chr11 138698756 138700041 -12083512 - L1PA4 LINE L1 -2 6153 4870 3932 187 65 53 chr11 138700041 138701326 -12082227 - L1MCb LINE L1 -5245 1500 1 439 298 164 0 chr11 138701374 138701599 -12081954 - MIR SINE MIR 0 262 1 323 278 0 44 chr11 138701616 138701706 -12081847 - L2 LINE L2 -58 3255 3170 586 264 47 59 chr11 138701780 138701953 -12081600 - MIR SINE MIR -21 187 13 215 254 218 0 chr11 138702595 138702705 -12080848 - L2 LINE L2 -878 2436 2303 309 291 111 104 chr11 138703264 138703704 -12079849 - L2 LINE L2 -4 3268 2826 226 275 66 22 chr11 138704536 138704627 -12078926 + L2 LINE L2 3177 3271 -1 453 304 24 0 chr11 138704974 138705099 -12078454 + MIR SINE MIR 2 129 -133 240 310 108 13 chr11 138706930 138707115 -12076438 + MIR SINE MIR 20 226 -36 185 284 99 12 chr11 138707186 138707267 -12076286 + MIR SINE MIR 94 181 -81 289 160 20 0 chr11 138707461 138707511 -12076042 + L2 LINE L2 3262 3312 -1 297 273 182 26 chr11 138707517 138707671 -12075882 + MIR SINE MIR 76 253 -9 299 202 11 22 chr11 138708678 138708767 -12074786 + CT-rich Low_complexity Low_complexity 2 89 0 532 162 0 15 chr11 138709085 138709221 -12074332 + CT-rich Low_complexity Low_complexity 2 135 0 185 300 0 71 chr11 138709659 138709729 -12073824 + MIR SINE MIR 59 123 -85 766 290 94 20 chr11 138709779 138710182 -12073371 - L2 LINE L2 -46 3267 2835 213 273 104 52 chr11 138710391 138710468 -12073085 + MIR SINE MIR 111 191 -71 341 266 0 11 chr11 138710619 138710713 -12072840 - MIR SINE MIR -60 202 110 21 0 0 0 chr11 138712719 138712740 -12070813 + GC_rich Low_complexity Low_complexity 1 21 0 224 246 0 18 chr11 138712842 138712899 -12070654 + MIR SINE MIR 100 155 -107 344 103 17 0 chr11 138713201 138713259 -12070294 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 277 287 65 9 chr11 138713691 138713799 -12069754 + MIR SINE MIR 36 149 -59 182 299 104 13 chr11 138714350 138714427 -12069126 - MIR SINE MIR -92 116 33 1305 144 24 0 chr11 138714501 138714709 -12068844 + MER2 DNA MER2_type 1 213 -132 338 277 0 0 chr11 138714748 138714813 -12068740 + MER2 DNA MER2_type 280 344 -1 393 305 113 47 chr11 138714843 138715223 -12068330 - MLT1J2 LTR MaLR -44 406 2 2276 184 15 19 chr11 138715906 138716369 -12067184 - MLT1C LTR MaLR -2 465 5 202 229 0 0 chr11 138716571 138716606 -12066947 - L2 LINE L2 -18 3254 3220 476 296 96 47 chr11 138716683 138716984 -12066569 + L2 LINE L2 2953 3268 -45 588 267 45 30 chr11 138717134 138717336 -12066217 + MIR SINE MIR 52 256 -6 1396 206 142 39 chr11 138719746 138720203 -12063350 - MLT1D LTR MaLR 0 505 2 586 274 215 4 chr11 138720371 138720608 -12062945 + MLT1J2 LTR MaLR 13 299 -151 1010 246 125 26 chr11 138721112 138721582 -12061971 - MLT1G LTR MaLR 0 590 1 280 301 85 39 chr11 138721982 138722135 -12061418 + MLT1J2 LTR MaLR 224 383 -67 242 244 189 29 chr11 138722676 138722914 -12060639 + L1ME4a LINE L1 5845 6120 -1 5675 111 13 7 chr11 138722922 138723767 -12059786 - L1PA16 LINE L1 -15 6151 5302 1160 195 11 4 chr11 138723784 138724051 -12059502 - AluSg SINE Alu -4 306 38 221 368 105 0 chr11 138725707 138725821 -12057732 - MIR SINE MIR -114 148 23 248 229 49 0 chr11 138727645 138727706 -12055847 + L3b LINE CR1 1517 1580 -3 208 232 36 18 chr11 138728209 138728265 -12055288 + L2 LINE L2 3016 3072 -241 252 316 10 0 chr11 138729672 138729770 -12053783 - L1MC4 LINE L1 -5 8037 7939 1116 282 78 49 chr11 138729902 138730036 -12053517 - L1ME3A LINE L1 -209 5961 5832 2381 95 0 10 chr11 138730036 138730340 -12053213 - AluSx SINE Alu -11 301 1 1116 282 78 49 chr11 138730340 138732064 -12051489 - L1ME3A LINE L1 -338 5832 2946 2483 55 3 0 chr11 138732137 138732428 -12051125 + AluY SINE Alu 1 292 -19 23 0 0 0 chr11 138732532 138732555 -12050998 + GC_rich Low_complexity Low_complexity 1 23 0 249 33 0 0 chr11 138732576 138732606 -12050947 + (A)n Simple_repeat Simple_repeat 1 30 0 582 194 11 69 chr11 138732863 138733038 -12050515 - L1MA10 LINE L1 -1 6333 6169 262 265 15 0 chr11 138733093 138733161 -12050392 + MLT2B3 LTR ERVL 15 83 -471 1978 157 15 51 chr11 138733223 138733617 -12049936 - L1MB1 LINE L1 -50 6139 5760 869 293 70 21 chr11 138733859 138734187 -12049366 + MLT1I LTR MaLR 65 408 -1 337 335 46 31 chr11 138734193 138734387 -12049166 - L1ME3A LINE L1 -3758 2388 2192 1014 248 82 19 chr11 138734518 138734939 -12048614 + MLT1C LTR MaLR 16 467 0 437 211 26 18 chr11 138734945 138735059 -12048494 + MIR SINE MIR 148 262 0 374 226 137 0 chr11 138735148 138735250 -12048303 - LTR16A1 LTR ERVL -1 456 341 637 140 20 0 chr11 138735250 138735350 -12048203 - Ricksha DNA DNA -1098 948 847 510 108 0 0 chr11 138735365 138735448 -12048105 + (GA)n Simple_repeat Simple_repeat 1 83 0 4404 150 86 14 chr11 138735448 138736230 -12047323 - Ricksha DNA DNA -1201 845 8 389 252 95 22 chr11 138736237 138736420 -12047133 - LTR16A1 LTR ERVL -107 350 154 184 336 61 15 chr11 138736633 138736764 -12046789 + L2 LINE L2 2342 2478 -836 819 268 160 60 chr11 138736924 138737683 -12045870 + L2 LINE L2 2469 3313 0 330 228 63 13 chr11 138738097 138738176 -12045377 + L2 LINE L2 3231 3313 0 2249 213 31 53 chr11 138738450 138739088 -12044465 + MLT1E3 LTR MaLR 1 624 0 230 167 0 83 chr11 138739236 138739284 -12044269 - MLT-int LTR MaLR -1499 236 193 412 268 88 68 chr11 138739825 138740030 -12043523 - L1ME3A LINE L1 -25 6141 5931 769 217 100 21 chr11 138740085 138740325 -12043228 - L1ME3A LINE L1 -226 5944 5686 616 333 94 39 chr11 138840493 138841139 -11942414 + L2 LINE L2 308 989 -2325 1465 281 53 31 chr11 138841185 138841823 -11941730 + L2 LINE L2 1755 2406 -908 324 0 0 0 chr11 138842330 138842366 -11941187 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 280 253 10 10 chr11 138842562 138842661 -11940892 + (CA)n Simple_repeat Simple_repeat 1 99 0 1819 152 0 3 chr11 138842765 138843097 -11940456 - AluY SINE Alu 0 331 1 1267 7 0 0 chr11 138843104 138843239 -11940314 - AluYa5 SINE Alu -13 298 164 287 242 0 0 chr11 138843455 138843517 -11940036 - SST1 Satellite centromeric -339 1224 1163 291 28 0 0 chr11 138844694 138844730 -11938823 + (TG)n Simple_repeat Simple_repeat 1 36 0 21 57 0 0 chr11 138847379 138847414 -11936139 + AT_rich Low_complexity Low_complexity 1 35 0 273 29 0 0 chr11 138850774 138850808 -11932745 + (CA)n Simple_repeat Simple_repeat 1 34 0 228 275 33 33 chr11 138851168 138851259 -11932294 - SST1 Satellite centromeric -325 1238 1148 3841 105 4 0 chr11 138852439 138852974 -11930579 - Harlequin LTR ERV1 -6359 537 1 2019 196 61 25 chr11 138852974 138853417 -11930136 - LTR2B LTR ERV1 0 490 32 197 326 11 34 chr11 138853938 138854027 -11929526 + MER5B DNA MER1_type 25 111 -67 744 265 33 23 chr11 138854096 138854311 -11929242 - MER58A DNA MER1_type -6 218 2 4833 186 26 12 chr11 138854402 138854646 -11928907 + L1PA16 LINE L1 4903 5142 -1024 2962 107 23 7 chr11 138854646 138855087 -11928466 - LTR7 LTR ERV1 -2 448 1 4833 186 26 12 chr11 138855087 138856086 -11927467 + L1PA16 LINE L1 5142 6155 -11 192 111 0 0 chr11 138856899 138856935 -11926618 + (TG)n Simple_repeat Simple_repeat 1 36 0 375 323 49 36 chr11 138858061 138858451 -11925102 + SST1 Satellite centromeric 207 601 -962 1075 192 21 0 chr11 138859475 138859668 -11923885 + THE1C LTR MaLR 1 197 -178 1864 178 48 22 chr11 138859669 138860024 -11923529 + THE1B LTR MaLR 1 364 0 3236 122 2 0 chr11 138860040 138860516 -11923037 + THE1B-int LTR MaLR 16 492 -1088 * 4511 118 3 0 chr11 138860514 138861131 -11922422 + THE1B-int LTR MaLR 958 1576 -4 1842 158 59 31 chr11 138861135 138861489 -11922064 + THE1B LTR MaLR 1 364 0 1145 142 0 6 chr11 138861496 138861672 -11921881 + THE1C LTR MaLR 199 373 -2 329 225 66 60 chr11 138861875 138862026 -11921527 - MIR SINE MIR -10 252 101 2805 23 0 0 chr11 138863070 138863380 -11920173 + AluYa5 SINE Alu 1 310 -1 286 308 80 47 chr11 138864284 138864560 -11918993 - SST1 Satellite centromeric -1072 491 207 245 42 0 83 chr11 138865686 138865734 -11917819 + (CA)n Simple_repeat Simple_repeat 1 44 0 250 294 68 20 chr11 138865779 138865925 -11917628 - SST1 Satellite centromeric -25 1538 1386 206 197 45 0 chr11 138868063 138868129 -11915424 + (CA)n Simple_repeat Simple_repeat 1 69 0 204 135 0 0 chr11 138870514 138870551 -11913002 + (CA)n Simple_repeat Simple_repeat 2 38 0 246 32 0 0 chr11 138871164 138871195 -11912358 + (CA)n Simple_repeat Simple_repeat 2 32 0 236 268 42 0 chr11 138872304 138872375 -11911178 - SST1 Satellite centromeric -334 1229 1156 207 0 0 0 chr11 138873643 138873666 -11909887 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 237 236 22 11 chr11 138874992 138875081 -11908472 + (CA)n Simple_repeat Simple_repeat 1 90 0 349 287 65 53 chr11 138875944 138876191 -11907362 - SST1 Satellite centromeric -962 601 352 215 24 0 98 chr11 138877389 138877430 -11906123 + (CA)n Simple_repeat Simple_repeat 1 37 0 471 277 80 72 chr11 138878345 138878735 -11904818 - SST1 Satellite centromeric -962 601 209 2021 123 0 68 chr11 138879307 138879632 -11903921 - AluSx SINE Alu -9 303 1 387 286 30 30 chr11 138879634 138879833 -11903720 + L1ME LINE L1 2533 2731 -3415 579 326 50 15 chr11 138880018 138880463 -11903090 + L1ME LINE L1 5191 5571 -595 688 172 86 17 chr11 138880503 138880677 -11902876 + MER53 DNA DNA 3 188 -1 913 155 7 7 chr11 138880766 138880946 -11902607 + AluSc SINE Alu 131 310 0 659 215 15 0 chr11 138882219 138882349 -11901204 + AluJo/FLAM SINE Alu 2 133 -169 241 214 89 0 chr11 138882349 138882405 -11901148 + AluSq SINE Alu 134 194 -109 1299 134 0 144 chr11 138882405 138882682 -11900871 + LTR12 LTR ERV1 22 258 -456 333 247 31 0 chr11 138882682 138882779 -11900774 + LTR30 LTR ERV1 524 623 -99 1477 153 35 0 chr11 138882795 138883024 -11900529 + LTR12 LTR ERV1 478 714 0 766 151 0 0 chr11 138883025 138883195 -11900358 + AluSg/x SINE Alu 167 336 0 615 159 7 43 chr11 138884031 138884169 -11899384 - L1MA7 LINE L1 -1 6290 6158 1502 153 3 93 chr11 138884595 138884896 -11898657 + AluSc SINE Alu 1 274 -35 183 42 0 0 chr11 138884916 138884940 -11898613 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 247 175 0 0 chr11 138885229 138885292 -11898261 - L1MA3 LINE L1 0 6305 6243 265 303 13 0 chr11 138887013 138887089 -11896464 + MER81 DNA DNA 36 112 -2 1159 236 77 52 chr11 138887504 138887749 -11895804 + MLT1A2 LTR MaLR 1 259 -115 1954 154 0 10 chr11 138887749 138888054 -11895499 - AluSx SINE Alu -10 302 1 1159 236 77 52 chr11 138888054 138888173 -11895380 + MLT1A2 LTR MaLR 259 374 0 223 48 24 24 chr11 138889062 138889104 -11894449 + (TTG)n Simple_repeat Simple_repeat 2 43 0 189 0 0 0 chr11 138889360 138889381 -11894172 + (CA)n Simple_repeat Simple_repeat 1 21 0 381 323 51 36 chr11 138890285 138890675 -11892878 - SST1 Satellite centromeric -961 602 207 261 0 0 0 chr11 138891589 138891618 -11891935 + (T)n Simple_repeat Simple_repeat 1 29 0 257 0 30 0 chr11 138893736 138893769 -11889784 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 203 47 70 47 chr11 138894062 138894105 -11889448 + T-rich Low_complexity Low_complexity 2 45 0 201 94 0 0 chr11 138894275 138894307 -11889246 + (CA)n Simple_repeat Simple_repeat 1 32 0 227 255 0 0 chr11 138894585 138894632 -11888921 - SST1 Satellite centromeric -354 1209 1163 264 274 96 79 chr11 138895105 138895562 -11887991 - SST1 Satellite centromeric -962 601 137 678 251 9 45 chr11 138896058 138896390 -11887163 + LTR2 LTR ERV1 1 420 -29 231 36 0 0 chr11 138896390 138896418 -11887135 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 1992 230 5 0 chr11 138896440 138896822 -11886731 + Harlequin LTR ERV1 1 384 -6512 456 137 8 18 chr11 138896909 138897036 -11886517 + Harlequin LTR ERV1 525 683 -6213 5982 195 40 7 chr11 138897477 138899993 -11883560 + Harlequin LTR ERV1 658 3376 -4437 6698 202 16 5 chr11 138899994 138901573 -11881980 + Harlequin LTR ERV1 4375 6005 -1808 387 350 0 0 chr11 138901575 138901698 -11881855 + Harlequin LTR ERV1 6383 6505 -1308 718 214 0 0 chr11 138901726 138901857 -11881696 + Harlequin LTR ERV1 6765 6895 -1 705 262 3 36 chr11 138901857 138902218 -11881335 + LTR2 LTR ERV1 1 449 0 264 91 0 0 chr11 138905781 138905825 -11877728 + (TG)n Simple_repeat Simple_repeat 1 44 0 195 129 0 0 chr11 138906082 138906113 -11877440 + (A)n Simple_repeat Simple_repeat 1 31 0 342 299 74 64 chr11 138906977 138907368 -11876185 + SST1 Satellite centromeric 207 601 -962 299 318 66 42 chr11 138909334 138909620 -11873933 + SST1 Satellite centromeric 190 482 -1081 444 313 61 52 chr11 138911027 138911487 -11872066 + SST1 Satellite centromeric 138 601 -962 277 270 125 40 chr11 138912208 138912360 -11871193 + SST1 Satellite centromeric 1374 1538 -25 249 33 0 0 chr11 138912680 138912710 -11870843 + (A)n Simple_repeat Simple_repeat 1 30 0 269 321 59 56 chr11 138913726 138914013 -11869540 + SST1 Satellite centromeric 314 601 -962 248 246 0 46 chr11 138914500 138914565 -11868988 + SST1 Satellite centromeric 1156 1217 -346 216 143 0 0 chr11 138914942 138914984 -11868569 + (TG)n Simple_repeat Simple_repeat 1 42 0 301 299 23 40 chr11 138916873 138917047 -11866506 + SST1 Satellite centromeric 104 274 -1289 261 325 25 8 chr11 138918129 138918249 -11865304 - MIR SINE MIR -17 245 124 216 304 114 43 chr11 138918277 138918461 -11865092 - MIR SINE MIR 0 262 66 195 291 10 68 chr11 138918572 138918675 -11864878 + MIR SINE MIR 110 206 -56 344 276 95 91 chr11 138919734 138919998 -11863555 + L2 LINE L2 2980 3244 -69 2639 218 63 9 chr11 138920028 138920601 -11862952 + MER90 LTR ERV1 1 604 -10 1369 243 16 50 chr11 138921294 138921672 -11861881 + MLT1A1 LTR MaLR 1 365 0 495 352 28 28 chr11 138921863 138922150 -11861403 + L3 LINE CR1 1213 1499 -78 194 318 0 0 chr11 138922673 138922717 -11860836 - L2 LINE L2 -19 3253 3210 542 345 72 5 chr11 138922807 138923016 -11860537 - MIR SINE MIR -4 258 36 200 273 18 0 chr11 138924113 138924168 -11859385 + MIR SINE MIR 87 142 -66 1808 227 61 20 chr11 138925035 138925476 -11858077 - LTR2B LTR ERV1 0 490 32 36721 223 11 9 chr11 138925495 138932757 -11850796 - HERVE LTR ERV1 -1 7812 534 232 305 62 51 chr11 138933962 138934139 -11849414 - SST1 Satellite centromeric -1165 398 220 192 40 0 0 chr11 138935062 138935087 -11848466 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 216 253 13 0 chr11 138935287 138935362 -11848191 + (CA)n Simple_repeat Simple_repeat 1 76 0 276 247 21 0 chr11 138936319 138936416 -11847137 + (CA)n Simple_repeat Simple_repeat 2 100 0 225 250 24 0 chr11 138938830 138938914 -11844639 + (CA)n Simple_repeat Simple_repeat 1 86 0 236 276 109 63 chr11 138939473 138939647 -11843906 - SST1 Satellite centromeric -226 1337 1156 238 329 56 52 chr11 138940137 138940389 -11843164 - SST1 Satellite centromeric -962 601 349 203 83 0 83 chr11 138941678 138941726 -11841827 + (CA)n Simple_repeat Simple_repeat 1 44 0 207 152 0 0 chr11 138943022 138943068 -11840485 + (CA)n Simple_repeat Simple_repeat 1 46 0 189 0 0 0 chr11 138943829 138943850 -11839703 + (T)n Simple_repeat Simple_repeat 1 21 0 182 104 0 83 chr11 138944060 138944108 -11839445 + (CA)n Simple_repeat Simple_repeat 1 44 0 255 311 9 9 chr11 138944187 138944293 -11839260 - SST1 Satellite centromeric -71 1492 1387 397 308 52 59 chr11 138944866 138945155 -11838398 - SST1 Satellite centromeric -963 600 314 241 250 26 0 chr11 138946376 138946452 -11837101 + (CA)n Simple_repeat Simple_repeat 2 79 0 232 83 42 28 chr11 138948492 138948564 -11834989 + T-rich Low_complexity Low_complexity 2 74 0 208 279 0 0 chr11 138948769 138948830 -11834723 + (CA)n Simple_repeat Simple_repeat 2 62 0 252 326 77 64 chr11 138948854 138949246 -11834307 - SST1 Satellite centromeric -11 1552 1156 233 328 42 72 chr11 138949734 138949999 -11833554 - SST1 Satellite centromeric -963 600 344 194 0 39 0 chr11 138951057 138951083 -11832470 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 288 290 101 82 chr11 138952217 138952583 -11830970 - SST1 Satellite centromeric -962 601 229 860 198 189 19 chr11 138952996 138953208 -11830345 + AluSx SINE Alu 47 294 -18 293 259 35 26 chr11 138953368 138953484 -11830069 - L1MC5 LINE L1 -528 7433 7317 456 215 9 19 chr11 138953527 138953634 -11829919 - LTR16B LTR ERVL 0 464 359 253 358 33 25 chr11 138953810 138953930 -11829623 + L2 LINE L2 2936 3056 -216 326 283 151 19 chr11 138954265 138954424 -11829129 + MIR SINE MIR 12 191 -71 2028 150 0 3 chr11 138954572 138954865 -11828688 + AluSg SINE Alu 1 292 -18 1133 306 63 42 chr11 138954908 138955712 -11827841 - L2 LINE L2 -19 3294 2466 195 42 0 0 chr11 138955716 138955740 -11827813 + (TAA)n Simple_repeat Simple_repeat 3 26 0 452 302 63 40 chr11 138955753 138955975 -11827578 - MIR SINE MIR -23 239 13 236 289 0 0 chr11 138956111 138956163 -11827390 + LTR30 LTR ERV1 1 52 -670 1228 146 54 65 chr11 138956163 138956426 -11827127 + LTR12 LTR ERV1 53 258 -456 327 283 10 0 chr11 138956427 138956526 -11827027 + LTR30 LTR ERV1 525 624 -98 710 173 3 71 chr11 138956526 138956667 -11826886 + LTR12 LTR ERV1 300 483 -231 * 5869 138 1 7 chr11 138956661 138957553 -11826000 + HERV9 LTR ERV1 2086 2972 -5427 1090 127 99 0 chr11 138957552 138957733 -11825820 + HERV9 LTR ERV1 4756 4954 -3445 * 2419 176 90 88 chr11 138957726 138958625 -11824928 + HERV9 LTR ERV1 840 1740 -5156 285 158 70 18 chr11 138958604 138958661 -11824892 + HERV9 LTR ERV1 7604 7663 -736 * 1440 187 4 11 chr11 138958647 138958909 -11824644 + HERV9 LTR ERV1 7790 8049 -350 249 263 97 30 chr11 138959535 138959651 -11823902 + MIR SINE MIR 50 174 -61 398 309 54 36 chr11 138959862 138960021 -11823532 + MIR3 SINE MIR 35 199 -9 783 296 14 9 chr11 138960021 138960244 -11823309 - MER58A DNA MER1_type 0 224 1 189 0 0 0 chr11 138961569 138961590 -11821963 + (T)n Simple_repeat Simple_repeat 1 21 0 245 29 29 0 chr11 138961768 138961802 -11821751 + (CA)n Simple_repeat Simple_repeat 2 36 0 763 224 8 100 chr11 138961841 138962082 -11821471 + MER20 DNA MER1_type 1 219 0 2006 129 6 3 chr11 138962772 138963083 -11820470 - AluSp SINE Alu -1 312 1 399 273 90 64 chr11 138963346 138963800 -11819753 - L1MC/D LINE L1 -2048 5760 5295 235 278 102 34 chr11 138963790 138963995 -11819558 - L1MC/D LINE L1 -801 5345 5127 * 1921 140 39 0 chr11 138964456 138964741 -11818812 - AluSx SINE Alu -14 298 3 329 309 49 68 chr11 138965007 138965392 -11818161 - L1MC/D LINE L1 -2200 3946 3569 279 0 0 0 chr11 138965432 138965463 -11818090 + (GA)n Simple_repeat Simple_repeat 2 32 0 1448 176 44 37 chr11 138965537 138965809 -11817744 + THE1B LTR MaLR 1 274 -90 551 238 7 7 chr11 138965843 138965986 -11817567 + L1MB7 LINE L1 6033 6175 -9 345 336 43 43 chr11 138966033 138966313 -11817240 - L2 LINE L2 -809 2505 2226 300 53 0 0 chr11 138967125 138967163 -11816390 + (TG)n Simple_repeat Simple_repeat 2 39 0 291 320 41 46 chr11 138967975 138968169 -11815384 + MIR SINE MIR 60 252 -10 190 111 0 0 chr11 138968953 138968980 -11814573 - MIR SINE MIR -155 107 81 243 88 0 0 chr11 138968994 138969028 -11814525 + (TG)n Simple_repeat Simple_repeat 1 34 0 6090 137 21 6 chr11 138970624 138972073 -11811480 + L1PA11 LINE L1 4697 6169 -5 226 186 0 23 chr11 138972171 138972214 -11811339 + L2 LINE L2 3268 3309 -4 192 270 63 16 chr11 138972215 138972278 -11811275 - MIR SINE MIR -116 146 81 441 302 48 40 chr11 138972570 138972818 -11810735 - MIR SINE MIR -2 260 11 197 333 0 0 chr11 138973615 138973684 -11809869 + L2 LINE L2 2384 2452 -862 689 25 0 0 chr11 138973684 138973763 -11809790 + AluYa5/8 SINE Alu 211 289 -22 1513 290 27 34 chr11 138973774 138974408 -11809145 + L2 LINE L2 2445 3079 -234 1468 164 40 0 chr11 138974628 138974878 -11808675 + AluSq SINE Alu 41 300 -13 950 61 0 0 chr11 138975643 138975757 -11807796 - L1PA4 LINE L1 -4 6151 6038 455 333 123 34 chr11 138976723 138976788 -11806765 + L2 LINE L2 2880 2938 -375 1995 134 0 17 chr11 138976788 138977086 -11806467 - AluSc SINE Alu -16 293 1 455 333 123 34 chr11 138977086 138977401 -11806152 + L2 LINE L2 2938 3294 -19 26 0 0 0 chr11 138977980 138978006 -11805547 + AT_rich Low_complexity Low_complexity 1 26 0 1039 195 10 5 chr11 138978070 138978265 -11805288 - L1PA16 LINE L1 -36 6130 5935 275 207 0 0 chr11 138978280 138978338 -11805215 + L1PA16 LINE L1 5940 5997 -169 * 458 263 0 8 chr11 138978335 138978453 -11805100 - L1P LINE L1 -1185 4961 4845 4936 209 31 15 chr11 138978453 138980363 -11803190 - L1PA16 LINE L1 -242 5924 3990 1603 158 35 21 chr11 138981368 138981675 -11801878 - AluSg SINE Alu 0 310 1 22 0 0 0 chr11 138981721 138981743 -11801810 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 138981870 138981891 -11801662 + AT_rich Low_complexity Low_complexity 1 21 0 387 60 0 0 chr11 138982027 138982077 -11801476 + (TTA)n Simple_repeat Simple_repeat 2 51 0 23 0 0 0 chr11 138982143 138982166 -11801387 + AT_rich Low_complexity Low_complexity 1 23 0 1691 185 3 0 chr11 138982492 138982789 -11800764 - L1MB1 LINE L1 -6 6162 5865 1137 211 41 15 chr11 138984329 138984595 -11798958 - AluSg SINE Alu -23 287 15 1483 193 3 21 chr11 138984793 138985083 -11798470 + AluSx SINE Alu 3 287 -25 501 238 36 42 chr11 138985114 138985148 -11798405 - L1MA4 LINE L1 -95 6205 6172 1196 240 52 14 chr11 138985148 138985436 -11798117 - AluJo SINE Alu -2 300 2 501 238 36 42 chr11 138985436 138985569 -11797984 - L1MA4 LINE L1 -128 6172 6039 259 220 0 0 chr11 138985615 138985674 -11797879 + L1MA4 LINE L1 6232 6290 -10 22 35 0 0 chr11 138985674 138985703 -11797850 + AT_rich Low_complexity Low_complexity 1 29 0 363 347 25 31 chr11 138985947 138986230 -11797323 + L1M3de LINE L1 372 655 -5998 1753 174 13 3 chr11 138986230 138986534 -11797019 - AluSx SINE Alu -5 307 1 363 347 25 31 chr11 138986534 138986581 -11796972 + L1M3de LINE L1 655 1436 -5217 1468 244 35 45 chr11 138986866 138987292 -11796261 + MSTB LTR MaLR 1 422 -4 264 281 143 71 chr11 138987303 138987495 -11796058 + L1M3de LINE L1 649 863 -5790 1503 197 0 14 chr11 138987495 138987774 -11795779 - AluSc SINE Alu -21 288 14 264 281 143 71 chr11 138987774 138987819 -11795734 + L1M3de LINE L1 863 903 -5750 617 369 44 20 chr11 138987848 138988306 -11795247 + L1M3b LINE L1 42 510 -5771 230 240 10 80 chr11 138989110 138989210 -11794343 + L1P LINE L1 3475 3567 -2579 197 119 24 0 chr11 138989272 138989314 -11794239 + (CA)n Simple_repeat Simple_repeat 2 44 0 284 273 11 23 chr11 138989318 138989406 -11794147 - MLT1E LTR MaLR -122 471 385 345 259 14 119 chr11 138989546 138989689 -11793864 + FLAM_C SINE Alu 1 128 -5 270 125 0 0 chr11 138990303 138990351 -11793202 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 969 120 11 11 chr11 138990352 138990527 -11793026 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 1259 203 0 48 chr11 138990545 138990840 -11792713 - AluSx SINE Alu -20 292 12 1244 217 34 24 chr11 138990895 138991190 -11792363 - AluSx SINE Alu -4 298 1 287 256 111 26 chr11 138991359 138991476 -11792077 - MLT1F LTR MaLR -27 515 389 261 0 0 0 chr11 138992310 138992339 -11791214 + (TA)n Simple_repeat Simple_repeat 1 29 0 323 313 17 9 chr11 138994502 138994617 -11788936 + FLAM_C SINE Alu 11 126 -7 23 0 0 0 chr11 138994617 138994640 -11788913 + AT_rich Low_complexity Low_complexity 1 23 0 376 264 11 0 chr11 138994673 138994760 -11788793 + FRAM SINE Alu 69 156 -10 25 31 0 0 chr11 138994763 138994795 -11788758 + AT_rich Low_complexity Low_complexity 1 32 0 185 273 55 0 chr11 138995285 138995340 -11788213 + L2 LINE L2 3252 3309 -4 340 172 0 0 chr11 138995943 138996001 -11787552 + L1MC4 LINE L1 6610 6667 -1375 2515 151 42 150 chr11 138996010 138996772 -11786781 + LTR1 LTR ERV1 2 681 -104 363 325 61 47 chr11 138997657 138998082 -11785471 + SST1 Satellite centromeric 94 524 -1039 211 270 22 0 chr11 138999037 138999126 -11784427 + (TG)n Simple_repeat Simple_repeat 2 92 0 279 352 47 33 chr11 139000072 139000561 -11782992 + SST1 Satellite centromeric 132 627 -936 225 200 17 0 chr11 139001459 139001519 -11782034 + (TG)n Simple_repeat Simple_repeat 2 62 0 258 349 39 35 chr11 139002449 139002704 -11780849 + SST1 Satellite centromeric 344 599 -964 225 359 0 0 chr11 139003172 139003250 -11780303 + SST1 Satellite centromeric 1162 1239 -324 259 308 58 68 chr11 139004754 139005153 -11778400 + SST1 Satellite centromeric 207 601 -962 257 280 78 102 chr11 139005650 139005982 -11777571 + SST1 Satellite centromeric 1163 1486 -77 420 20 0 0 chr11 139006085 139006134 -11777419 + (TG)n Simple_repeat Simple_repeat 2 50 0 244 309 0 0 chr11 139008114 139008182 -11775371 + SST1 Satellite centromeric 1162 1229 -334 268 202 24 12 chr11 139008493 139008577 -11774976 + (TG)n Simple_repeat Simple_repeat 2 86 0 249 108 0 0 chr11 139009102 139009139 -11774414 + (A)n Simple_repeat Simple_repeat 1 37 0 604 172 4 11 chr11 139110194 139110463 -11673090 + (TG)n Simple_repeat Simple_repeat 1 266 0 707 220 25 13 chr11 139110668 139110827 -11672726 + MLT1I LTR MaLR 20 180 -229 3354 96 8 8 chr11 139110830 139111308 -11672245 + L1MA8 LINE L1 5532 6009 -282 799 357 16 0 chr11 139111546 139111795 -11671758 - MIR SINE MIR -5 257 5 239 314 274 8 chr11 139112415 139112813 -11670740 + L2 LINE L2 2255 2758 -556 2379 77 0 32 chr11 139112988 139113300 -11670253 - AluSc SINE Alu -2 307 6 2144 154 0 0 chr11 139113610 139113940 -11669613 + HERVH LTR ERV1 4820 5149 -2564 1326 157 19 0 chr11 139113941 139114157 -11669396 + HERVH LTR ERV1 5600 5819 -1894 * 2470 94 52 13 chr11 139114150 139114534 -11669019 + HERVH LTR ERV1 7315 7713 0 2931 68 131 0 chr11 139114534 139114930 -11668623 + LTR7 LTR ERV1 1 448 -2 435 248 38 15 chr11 139115373 139115506 -11668047 - L1M4 LINE L1 -979 5167 5032 651 201 255 11 chr11 139115513 139115778 -11667775 + L1ME LINE L1 5204 5440 -726 188 0 74 0 chr11 139115822 139115849 -11667704 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1766 230 144 6 chr11 139115852 139116365 -11667188 - L1MD3 LINE L1 -11 7984 7401 212 190 17 35 chr11 139116739 139116797 -11666756 + T-rich Low_complexity Low_complexity 3 59 0 2126 220 53 34 chr11 139117114 139118053 -11665500 - L1MDa LINE L1 -2224 4316 225 9885 113 23 99 chr11 139118060 139119001 -11664552 - Tigger1 DNA MER2_type 0 2418 1526 1006 158 0 0 chr11 139119001 139119147 -11664406 - AluSc SINE Alu -26 283 138 9885 113 23 99 chr11 139119147 139119883 -11663670 - Tigger1 DNA MER2_type -892 1526 735 885 194 54 0 chr11 139119878 139119890 -11663663 - Tigger1 DNA MER2_type -2222 196 186 * 300 53 0 0 chr11 139119890 139119928 -11663625 + (TAA)n Simple_repeat Simple_repeat 2 39 0 885 194 54 0 chr11 139119928 139120101 -11663452 - Tigger1 DNA MER2_type -2232 186 1 580 229 28 14 chr11 139120101 139120245 -11663308 - L1MDa LINE L1 -6321 219 74 1022 183 71 0 chr11 139120346 139120543 -11663010 - MER2 DNA MER2_type -134 211 1 399 182 13 26 chr11 139120543 139120620 -11662933 - L1MDa LINE L1 -6464 76 1 * 443 210 30 85 chr11 139120599 139120868 -11662685 - L1MDa LINE L1 -3890 2650 2433 1929 274 58 34 chr11 139120870 139121744 -11661809 - L1MDa LINE L1 -4363 2033 1139 586 222 117 19 chr11 139122776 139122938 -11660615 - MER5B DNA MER1_type 0 178 1 1034 260 132 11 chr11 139123980 139124449 -11659104 + L1ME4a LINE L1 5527 6052 -69 21 0 0 0 chr11 139124494 139124515 -11659038 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 139125583 139125604 -11657949 + AT_rich Low_complexity Low_complexity 1 21 0 882 194 82 5 chr11 139126968 139127164 -11656389 + MER20 DNA MER1_type 1 211 -8 575 279 117 41 chr11 139128129 139128445 -11655108 + L2 LINE L2 2630 2969 -345 192 222 14 42 chr11 139129013 139129085 -11654468 + L2 LINE L2 3183 3252 -61 311 286 8 60 chr11 139131738 139131871 -11651682 - MIR3 SINE MIR -6 202 77 22 0 0 0 chr11 139131892 139131914 -11651639 + AT_rich Low_complexity Low_complexity 1 22 0 406 259 114 36 chr11 139132050 139132216 -11651337 - HAL1 LINE L1 -585 1922 1744 1214 285 86 35 chr11 139132227 139132872 -11650681 - HAL1 LINE L1 -969 1538 851 2123 201 15 8 chr11 139132872 139133265 -11650288 - MSTD LTR MaLR 0 396 1 1214 285 86 35 chr11 139133265 139133339 -11650214 - HAL1 LINE L1 -1656 851 782 492 298 91 1 chr11 139133351 139133680 -11649873 + MLT1I LTR MaLR 3 407 -2 1252 156 11 3 chr11 139133846 139134163 -11649390 - MSTB LTR MaLR -12 420 7 1413 207 240 16 chr11 139134185 139134572 -11648981 + MLT2B1 LTR ERVL 1 493 -27 191 35 0 35 chr11 139134572 139134601 -11648952 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1413 207 240 16 chr11 139134601 139134638 -11648915 + MLT2B1 LTR ERVL 493 520 0 4214 47 14 0 chr11 139135127 139135640 -11647913 + L1PA5 LINE L1 5623 6142 -12 704 204 6 2 chr11 139136278 139136759 -11646794 + (TG)n Simple_repeat Simple_repeat 1 483 0 4035 248 64 13 chr11 139137025 139138356 -11645197 - L1M4 LINE L1 -2455 3691 2288 1844 208 103 36 chr11 139138356 139138734 -11644819 + MER68 LTR ERV1 1 425 -137 2136 103 0 47 chr11 139138734 139139034 -11644519 - AluSg1 SINE Alu -19 290 5 1844 208 103 36 chr11 139139034 139139178 -11644375 + MER68 LTR ERV1 425 558 -4 4035 248 64 13 chr11 139139178 139139203 -11644350 - L1M4 LINE L1 -3858 2288 2266 9849 212 61 38 chr11 139139234 139139337 -11644216 - L1MD1 LINE L1 -2 6634 6535 2233 134 132 5 chr11 139139337 139139717 -11643836 - MSTA LTR MaLR 0 428 1 9849 212 61 38 chr11 139139717 139141860 -11641693 - L1MD1 LINE L1 -101 6535 4442 3353 154 31 18 chr11 139141860 139142477 -11641076 - L1MC1 LINE L1 0 6333 5709 9849 212 61 38 chr11 139142477 139144446 -11639107 - L1MD1 LINE L1 -2194 4442 2286 505 138 0 11 chr11 139144446 139144540 -11639013 - L1MA4 LINE L1 -5 6295 6203 9849 212 61 38 chr11 139144540 139145282 -11638271 - L1MD1 LINE L1 -4350 2286 1562 865 165 19 62 chr11 139145255 139145331 -11638222 - L1MD1 LINE L1 -5212 1331 1253 * 1711 181 40 8 chr11 139145331 139145685 -11637868 - L1MA4 LINE L1 -1 6299 5935 865 165 19 62 chr11 139145685 139145858 -11637695 - L1MD1 LINE L1 -5290 1253 1066 10337 25 1 2 chr11 139145864 139147833 -11635720 - L1PA3 LINE L1 -4 6151 4183 367 287 89 55 chr11 139148398 139148600 -11634953 + MIR SINE MIR 5 213 -49 279 255 78 69 chr11 139149097 139149199 -11634354 + MER5B DNA MER1_type 72 174 -4 255 309 58 22 chr11 139150365 139150504 -11633049 + MER5B DNA MER1_type 35 178 0 230 282 127 49 chr11 139151239 139151381 -11632172 + L2 LINE L2 3117 3269 -3 226 378 9 0 chr11 139151924 139152035 -11631518 + MIR SINE MIR 10 121 -141 1026 244 97 25 chr11 139152373 139152808 -11630745 - MLT1C LTR MaLR 0 467 2 198 287 266 0 chr11 139152990 139153133 -11630420 + MIR SINE MIR 70 250 -12 6228 101 234 88 chr11 139153171 139154651 -11628902 - pTR5 LTR ERV1 0 2438 743 1515 180 29 73 chr11 139155764 139156147 -11627406 - L1MB5 LINE L1 -42 6132 5767 1449 205 57 23 chr11 139156796 139157147 -11626406 + MLT1A1 LTR MaLR 1 363 -2 304 292 39 106 chr11 139157323 139157607 -11625946 + L2 LINE L2 3008 3272 0 190 250 42 14 chr11 139158406 139158478 -11625075 - MIR SINE MIR -96 166 93 231 305 21 50 chr11 139160928 139161069 -11622484 - MIR SINE MIR -55 153 17 192 351 119 20 chr11 139161843 139161994 -11621559 - MIR3 SINE MIR -24 184 19 357 24 0 0 chr11 139163426 139163468 -11620085 + (TG)n Simple_repeat Simple_repeat 2 43 0 4131 284 124 20 chr11 139163525 139166422 -11617131 - L2 LINE L2 -2 3311 116 641 261 112 0 chr11 139166428 139166643 -11616910 - MIR SINE MIR 0 262 24 180 348 22 0 chr11 139166679 139166768 -11616785 + MIR SINE MIR 64 154 -108 825 89 0 68 chr11 139167004 139167305 -11616248 + (TTCCC)n Simple_repeat Simple_repeat 1 280 0 707 107 11 59 chr11 139167498 139167685 -11615868 + (TTCCC)n Simple_repeat Simple_repeat 3 180 0 843 104 11 44 chr11 139167699 139167881 -11615672 + (TTCCC)n Simple_repeat Simple_repeat 1 176 0 1385 172 0 9 chr11 139167927 139168148 -11615405 - AluJo SINE Alu -87 225 7 588 246 81 38 chr11 139170112 139170534 -11613019 - MLT1D LTR MaLR -7 498 1 992 259 0 0 chr11 139170546 139170778 -11612775 + MIR SINE MIR 31 262 0 3705 199 23 39 chr11 139170932 139172055 -11611498 + L1MB3 LINE L1 4504 5603 -580 880 161 28 6 chr11 139172058 139172238 -11611315 + L1MB3 LINE L1 6000 6183 0 33 73 0 0 chr11 139172422 139172490 -11611063 + AT_rich Low_complexity Low_complexity 1 68 0 455 245 37 31 chr11 139173016 139173179 -11610374 + MIR SINE MIR 80 243 -19 2493 145 67 0 chr11 139174032 139174433 -11609120 - MSTC LTR MaLR 0 428 1 720 277 130 43 chr11 139174938 139175375 -11608178 - L2 LINE L2 0 3313 2839 639 299 49 63 chr11 139175656 139176087 -11607466 + MLT1K LTR MaLR 164 588 0 286 245 168 7 chr11 139176149 139176292 -11607261 + MIR SINE MIR 86 251 -11 229 377 9 0 chr11 139177230 139177344 -11606209 + L2 LINE L2 2718 2832 -482 278 371 32 8 chr11 139177670 139177794 -11605759 + L2 LINE L2 3124 3250 -22 252 0 0 0 chr11 139177804 139177832 -11605721 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 229 272 26 79 chr11 139178582 139178696 -11604857 + MIR3 SINE MIR 94 201 -7 200 256 122 0 chr11 139179836 139179926 -11603627 + MIR SINE MIR 151 251 -11 207 250 0 0 chr11 139180860 139180912 -11602641 + C-rich Low_complexity Low_complexity 5 56 0 297 351 33 0 chr11 139182178 139182329 -11601224 + L3b LINE CR1 1103 1258 -325 420 20 0 0 chr11 139183075 139183124 -11600429 + (TA)n Simple_repeat Simple_repeat 1 49 0 33018 41 33 1 chr11 139183281 139187311 -11596242 + L1P LINE L1 3 4160 -1986 1526 172 26 36 chr11 139187419 139187515 -11596038 + MLT1A1 LTR MaLR 56 151 -214 2365 93 10 0 chr11 139187515 139187816 -11595737 + AluSq SINE Alu 1 304 -9 1526 172 26 36 chr11 139187816 139188027 -11595526 + MLT1A1 LTR MaLR 151 360 -5 235 243 84 56 chr11 139189977 139190084 -11593469 - L2 LINE L2 -2 3311 3202 1344 39 0 0 chr11 139192292 139192448 -11591105 - L1PA5 LINE L1 -253 5901 5746 2470 24 3 3 chr11 139192448 139192724 -11590829 + L1PA4 LINE L1 5864 6155 0 273 222 0 0 chr11 139193298 139193361 -11590192 + MIR3 SINE MIR 122 184 -24 741 178 0 0 chr11 139193491 139193648 -11589905 + (TCCA)n Simple_repeat Simple_repeat 4 160 0 204 351 38 0 chr11 139194016 139194147 -11589406 + MIR3 SINE MIR 9 144 -64 236 254 0 0 chr11 139194364 139194427 -11589126 - MIR SINE MIR -5 257 195 386 326 44 0 chr11 139194465 139194646 -11588907 - MIR SINE MIR -66 196 8 384 208 0 58 chr11 139194903 139195023 -11588530 - MIR SINE MIR -1 261 149 484 298 130 93 chr11 139195067 139195506 -11588047 - MLT1K LTR MaLR -79 509 55 199 261 108 62 chr11 139196197 139196327 -11587226 + MIR SINE MIR 9 144 -118 1505 183 44 15 chr11 139197763 139198037 -11585516 - AluJo SINE Alu -30 282 1 1019 209 75 86 chr11 139198623 139198982 -11584571 - MLT2D LTR ERVL -40 374 20 220 350 25 0 chr11 139199172 139199252 -11584301 - MIR SINE MIR -142 120 39 199 283 174 0 chr11 139200884 139200976 -11582577 + MIR SINE MIR 58 165 -97 275 0 29 0 chr11 139202055 139202090 -11581463 + (TG)n Simple_repeat Simple_repeat 2 37 0 9596 212 66 28 chr11 139202094 139204911 -11578642 - L1MB7 LINE L1 -8 6176 3190 2848 10 0 0 chr11 139204911 139205214 -11578339 + AluYa5 SINE Alu 2 304 -7 9596 212 66 28 chr11 139205214 139205981 -11577572 - L1MB7 LINE L1 -2994 3190 2454 527 325 0 64 chr11 139206209 139206412 -11577141 - MIR3 SINE MIR -13 195 6 189 121 0 0 chr11 139206554 139206587 -11576966 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 1091 249 4 0 chr11 139207800 139208041 -11575512 - MER58 DNA MER1_type -2178 242 1 26 0 0 0 chr11 139208479 139208505 -11575048 + AT_rich Low_complexity Low_complexity 1 26 0 700 240 12 61 chr11 139208506 139208752 -11574801 - L1MA9 LINE L1 -39 6273 6040 318 239 54 83 chr11 139208837 139209042 -11574511 - L1MC4a LINE L1 -1911 5897 5699 252 344 16 16 chr11 139209061 139209183 -11574370 - L1MC4a LINE L1 -2178 5630 5509 225 0 0 0 chr11 139209191 139209216 -11574337 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 354 333 5 46 chr11 139209599 139209794 -11573759 + L1M4 LINE L1 5155 5341 -805 1426 273 117 23 chr11 139209902 139210544 -11573009 - L1MCc LINE L1 -4887 1536 835 557 307 94 0 chr11 139212432 139212676 -11570877 + L1M4 LINE L1 2355 2621 -3525 1318 215 61 48 chr11 139212922 139213263 -11570290 - L1MC4a LINE L1 -1153 4993 4645 2192 109 3 16 chr11 139213263 139213567 -11569986 + AluSx SINE Alu 1 300 -12 1318 215 61 48 chr11 139213567 139213601 -11569952 - L1MC4a LINE L1 -1501 4645 4613 196 348 71 54 chr11 139213697 139213993 -11569560 - L3 LINE CR1 -665 912 612 272 239 42 132 chr11 139214940 139215107 -11568446 + MLT1K LTR MaLR 20 171 -417 715 160 0 0 chr11 139217528 139217634 -11565919 + FLAM_C SINE Alu 2 107 -36 220 229 0 0 chr11 139217694 139217742 -11565811 + A-rich Low_complexity Low_complexity 1 48 0 240 111 0 0 chr11 139217764 139217800 -11565753 + (A)n Simple_repeat Simple_repeat 1 36 0 209 302 0 16 chr11 139218258 139218321 -11565232 + GA-rich Low_complexity Low_complexity 3 64 0 1793 178 8 65 chr11 139219197 139219580 -11563973 + MLT1A1 LTR MaLR 1 361 -4 269 271 114 7 chr11 139219892 139220032 -11563521 + MIR SINE MIR 95 249 -13 350 270 14 34 chr11 139220692 139220840 -11562713 + GA-rich Low_complexity Low_complexity 2 146 0 274 156 31 0 chr11 139220860 139220924 -11562629 + GA-rich Low_complexity Low_complexity 1 66 0 509 70 127 0 chr11 139221701 139221772 -11561781 + MADE1 DNA Mariner 1 80 0 206 234 21 0 chr11 139222360 139222407 -11561146 + GA-rich Low_complexity Low_complexity 5 52 0 3713 250 22 34 chr11 139223508 139224079 -11559474 - MSTD-int LTR MaLR -778 957 401 1935 133 4 4 chr11 139224079 139224350 -11559203 + AluJb SINE Alu 3 273 -39 3713 250 22 34 chr11 139224350 139224746 -11558807 - MSTD-int LTR MaLR -1334 401 2 1608 217 90 6 chr11 139224753 139225099 -11558454 - MSTD LTR MaLR -5 391 17 1829 159 53 58 chr11 139225108 139225505 -11558048 + MSTD LTR MaLR 1 395 -1 1473 197 40 33 chr11 139225855 139226154 -11557399 - AluJb SINE Alu -10 302 2 221 56 0 28 chr11 139226425 139226461 -11557092 + (GA)n Simple_repeat Simple_repeat 2 36 0 313 300 35 66 chr11 139226653 139226880 -11556673 + HAL1 LINE L1 1 220 -2287 330 195 0 0 chr11 139226883 139226965 -11556588 + (TG)n Simple_repeat Simple_repeat 1 82 0 429 272 83 43 chr11 139227043 139227409 -11556144 + HAL1 LINE L1 350 775 -1732 666 332 8 16 chr11 139227410 139227660 -11555893 - MLT1I LTR MaLR -2 407 160 487 136 0 0 chr11 139227674 139227755 -11555798 - L1MA8 LINE L1 -1 6290 6210 461 306 133 32 chr11 139227856 139228314 -11555239 + L1M1 LINE L1 5283 5782 -520 291 299 123 49 chr11 139228847 139229718 -11553835 - L1M4 LINE L1 -1337 4809 3875 273 255 41 10 chr11 139229722 139229820 -11553733 - MIR SINE MIR -74 188 88 529 310 0 0 chr11 139231070 139231244 -11552309 - MIR SINE MIR -25 237 64 656 256 89 5 chr11 139231263 139231466 -11552087 - MIR SINE MIR -12 250 31 2403 87 152 8 chr11 139231670 139231716 -11551837 - MLT2A1 LTR ERVL 0 444 406 387 0 0 0 chr11 139231716 139231759 -11551794 + (TG)n Simple_repeat Simple_repeat 2 44 0 2403 87 152 8 chr11 139231759 139232093 -11551460 - MLT2A1 LTR ERVL -38 406 9 185 258 61 68 chr11 139235763 139235895 -11547658 + L2 LINE L2 2703 2833 -481 363 340 64 0 chr11 139235978 139236134 -11547419 - L2 LINE L2 -3 3269 3104 438 20 0 0 chr11 139236778 139236829 -11546724 + (TG)n Simple_repeat Simple_repeat 1 51 0 288 102 0 0 chr11 139236829 139236878 -11546675 + (GA)n Simple_repeat Simple_repeat 2 50 0 2192 103 0 10 chr11 139236957 139237249 -11546304 + AluSc SINE Alu 2 290 -19 905 318 80 11 chr11 139237479 139237942 -11545611 - L2 LINE L2 -1027 2287 1793 7751 20 10 0 chr11 139238478 139239431 -11544122 - L1PA4 LINE L1 0 6155 5200 796 170 0 21 chr11 139240466 139240607 -11542946 + MER45A DNA AcHobo 40 177 -1 2728 52 0 0 chr11 139241926 139242236 -11541317 + AluY SINE Alu 2 311 0 790 268 34 0 chr11 139243157 139243366 -11540187 + MIR SINE MIR 21 236 -26 465 302 131 50 chr11 139243764 139244197 -11539356 + L1ME3A LINE L1 4157 4553 -1593 1757 164 0 17 chr11 139244197 139244489 -11539064 - AluJb SINE Alu -23 289 3 465 302 131 50 chr11 139244489 139245201 -11538352 + L1ME3A LINE L1 4553 5395 -751 413 324 144 22 chr11 139245249 139245623 -11537930 + L1ME3A LINE L1 5469 5886 -284 2324 88 0 0 chr11 139246630 139246959 -11536594 + AluSc SINE Alu 1 329 0 189 74 0 0 chr11 139247247 139247274 -11536279 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 186 213 85 0 chr11 139247279 139247326 -11536227 - L2 LINE L2 -2 3270 3220 239 288 12 0 chr11 139247692 139247772 -11535781 - MIR SINE MIR -26 236 156 355 306 0 0 chr11 139247913 139248011 -11535542 - MIR SINE MIR -106 156 59 240 342 178 0 chr11 139249514 139249666 -11533887 + L2 LINE L2 2561 2739 -575 241 239 30 0 chr11 139249690 139249757 -11533796 + MIR SINE MIR 84 152 -110 300 324 104 42 chr11 139249825 139250084 -11533469 + L2 LINE L2 2963 3237 -35 517 188 119 19 chr11 139250465 139250625 -11532928 + MER5B DNA MER1_type 3 178 0 273 233 14 0 chr11 139252711 139252784 -11530769 + (TCTCTG)n Simple_repeat Simple_repeat 5 78 0 241 289 168 48 chr11 139253193 139253401 -11530152 - MIR SINE MIR -18 244 12 636 248 13 26 chr11 139253432 139253658 -11529895 - MIR SINE MIR -37 225 3 986 157 18 0 chr11 139254085 139254429 -11529124 + (TCCA)n Simple_repeat Simple_repeat 1 350 0 409 231 0 83 chr11 139255255 139255424 -11528129 - L2 LINE L2 -31 3282 3128 1409 166 47 119 chr11 139255425 139255828 -11527725 - MLT1A2 LTR MaLR 0 374 1 276 274 18 26 chr11 139256990 139257103 -11526450 + MER5A DNA MER1_type 50 161 -28 278 296 56 14 chr11 139257118 139257260 -11526293 - MER5B DNA MER1_type -2 176 29 1101 65 0 0 chr11 139259506 139259644 -11523909 + AluSg/x SINE Alu 175 312 0 1922 166 46 64 chr11 139260883 139261269 -11522284 + L1PA16 LINE L1 5725 6104 -62 1732 139 38 0 chr11 139261269 139261536 -11522017 + AluSq SINE Alu 34 310 -3 1922 166 46 64 chr11 139261536 139261584 -11521969 + L1PA16 LINE L1 6104 6151 -15 213 156 22 22 chr11 139261969 139262014 -11521539 + CT-rich Low_complexity Low_complexity 3 47 0 495 242 118 24 chr11 139262363 139262574 -11520979 - LTR16A LTR ERVL -13 437 207 334 251 42 93 chr11 139263770 139263985 -11519568 + MIR SINE MIR 3 206 -56 2059 116 61 3 chr11 139264297 139264591 -11518962 - AluSp SINE Alu -2 311 1 2291 78 7 42 chr11 139265129 139265437 -11518116 + AluY SINE Alu 6 302 -9 7917 20 0 0 chr11 139265860 139267040 -11516513 - L1PA2 LINE L1 0 6155 4976 285 256 56 32 chr11 139468940 139469065 -11314488 + MIR3 SINE MIR 1 128 -80 5388 87 1 85 chr11 139469077 139470010 -11313543 + L1PA5 LINE L1 5299 6153 -1 1076 188 14 0 chr11 139470010 139470218 -11313335 + L1MB1 LINE L1 5571 5781 -387 326 113 19 0 chr11 139470405 139470458 -11313095 - MLT1A1 LTR MaLR -86 279 226 1873 179 26 5 chr11 139470469 139470854 -11312699 + L1MB1 LINE L1 5776 6168 0 940 247 104 18 chr11 139471270 139471453 -11312100 - MLT1A1 LTR MaLR 0 365 199 2165 105 10 7 chr11 139471453 139471747 -11311806 - AluSx SINE Alu -17 295 1 940 247 104 18 chr11 139471747 139471899 -11311654 - MLT1A1 LTR MaLR -166 199 1 290 314 8 65 chr11 139473016 139473140 -11310413 - L2 LINE L2 -28 3285 3169 446 285 180 6 chr11 139473422 139473600 -11309953 + MIR SINE MIR 41 252 -10 2698 154 21 35 chr11 139473674 139473955 -11309598 - L1MC1 LINE L1 -195 6138 5866 2307 98 16 0 chr11 139473955 139474261 -11309292 - AluSp SINE Alu -2 311 1 2698 154 21 35 chr11 139474261 139474491 -11309062 - L1MC1 LINE L1 -467 5866 5634 207 305 116 11 chr11 139474619 139474714 -11308839 - L2 LINE L2 -1 3312 3208 283 319 49 21 chr11 139477331 139477475 -11306078 + ERVL LTR ERVL 2389 2536 -3228 297 320 10 61 chr11 139477475 139477672 -11305881 + LTR41 LTR ERVL 1 187 -586 235 218 96 64 chr11 139477853 139478041 -11305512 + LTR50 LTR ERVL 575 768 -27 355 360 36 32 chr11 139478064 139478342 -11305211 + ERVL LTR ERVL 2536 2814 -2950 237 289 0 67 chr11 139479674 139479854 -11303699 + (CAGGG)n Simple_repeat Simple_repeat 4 171 0 363 295 113 14 chr11 139480087 139480270 -11303283 + MIR SINE MIR 57 262 0 220 257 149 0 chr11 139481367 139481441 -11302112 + MIR SINE MIR 59 143 -119 183 375 77 0 chr11 139482621 139482725 -11300828 - MIR SINE MIR -63 145 34 419 263 32 39 chr11 139483371 139483527 -11300026 + MIR3 SINE MIR 5 159 -49 556 309 108 56 chr11 139483808 139484310 -11299243 + L1MC5 LINE L1 7408 7935 -26 201 333 15 0 chr11 139485722 139485788 -11297765 - L3b LINE CR1 -230 1353 1287 183 156 0 0 chr11 139487103 139487135 -11296418 + (TG)n Simple_repeat Simple_repeat 1 32 0 776 144 14 0 chr11 139487742 139487888 -11295665 - L1MD1 LINE L1 -2 6240 6093 1967 263 26 15 chr11 139487905 139488583 -11294970 - L1MDa LINE L1 -1097 5443 4758 863 246 26 17 chr11 139488592 139488824 -11294729 + MLT1A2 LTR MaLR 3 236 -138 5912 245 90 45 chr11 139488825 139488990 -11294563 - L1MDa LINE L1 -2504 4036 3880 1558 185 14 24 chr11 139488990 139489302 -11294251 - AluJo SINE Alu 0 309 1 5912 245 90 45 chr11 139489302 139492034 -11291519 - L1MDa LINE L1 -2660 3880 918 1702 177 40 13 chr11 139492034 139492333 -11291220 - AluJb SINE Alu -5 307 1 5912 245 90 45 chr11 139492333 139493277 -11290276 - L1MDa LINE L1 -5622 918 18 275 109 18 0 chr11 139493462 139493517 -11290036 + L1MA4A LINE L1 6248 6303 0 22 35 0 0 chr11 139493517 139493546 -11290007 + AT_rich Low_complexity Low_complexity 1 29 0 285 51 0 0 chr11 139493573 139493612 -11289941 + (CA)n Simple_repeat Simple_repeat 1 39 0 308 243 29 0 chr11 139496780 139496883 -11286670 + HERV16 LTR ERVL 101 206 -4790 335 67 0 0 chr11 139497092 139497137 -11286416 - U2 snRNA snRNA -143 45 1 2087 143 10 3 chr11 139497886 139498193 -11285360 + AluSx SINE Alu 3 311 -1 271 249 82 53 chr11 139498214 139498358 -11285195 + HERV16 LTR ERVL 2839 2989 -2007 1141 346 69 32 chr11 139498417 139499561 -11283992 + HERV16 LTR ERVL 3222 4407 -1357 1725 179 7 13 chr11 139499570 139499877 -11283676 + MLT1A1 LTR MaLR 1 305 -60 180 0 0 0 chr11 139500559 139500579 -11282974 + (TG)n Simple_repeat Simple_repeat 1 20 0 1880 186 56 12 chr11 139501129 139501537 -11282016 + MSTB LTR MaLR 1 426 0 4803 215 22 114 chr11 139501541 139503195 -11280358 + MSTB-int LTR MaLR 4 1504 -76 384 139 14 14 chr11 139503198 139503270 -11280283 + MLT1A1 LTR MaLR 359 430 -2 2591 61 0 0 chr11 139503395 139503692 -11279861 - AluY SINE Alu -14 297 1 624 265 65 66 chr11 139504450 139504955 -11278598 - L1MC4 LINE L1 0 8042 7549 180 0 0 0 chr11 139505146 139505166 -11278387 + (GGGA)n Simple_repeat Simple_repeat 4 23 0 268 246 70 0 chr11 139505424 139505566 -11277987 + (TCTA)n Simple_repeat Simple_repeat 2 153 0 1845 110 4 0 chr11 139505820 139506094 -11277459 + AluSx SINE Alu 39 313 0 256 224 0 0 chr11 139507421 139507470 -11276083 - MER81 DNA DNA -44 70 22 234 241 17 0 chr11 139508822 139508880 -11274673 + (CCCCAG)n Simple_repeat Simple_repeat 5 63 0 2630 163 83 9 chr11 139510008 139510562 -11272991 - LTR49 LTR ERV1 0 595 1 183 80 0 0 chr11 139511580 139511605 -11271948 + (T)n Simple_repeat Simple_repeat 1 25 0 262 189 0 27 chr11 139512996 139513070 -11270483 + CT-rich Low_complexity Low_complexity 3 74 0 195 204 0 0 chr11 139513464 139513518 -11270035 + GA-rich Low_complexity Low_complexity 1 54 0 953 142 49 49 chr11 139514875 139515080 -11268473 - MER4D LTR ERV1 0 872 668 241 263 0 18 chr11 139515902 139515959 -11267594 + (TG)n Simple_repeat Simple_repeat 2 57 0 204 40 0 0 chr11 139516431 139516456 -11267097 + (TG)n Simple_repeat Simple_repeat 1 25 0 2072 98 54 3 chr11 139516665 139516960 -11266593 - AluSq SINE Alu -3 310 1 280 310 132 17 chr11 139517017 139517191 -11266362 - L2 LINE L2 -21 3292 3099 226 234 43 32 chr11 139517271 139517365 -11266188 - L2 LINE L2 -598 2716 2622 957 219 17 21 chr11 139517894 139518131 -11265422 - L1MD3 LINE L1 -13 7982 7747 204 293 43 106 chr11 139518200 139518388 -11265165 + L3b LINE CR1 1277 1452 -131 2378 152 66 0 chr11 139518578 139518974 -11264579 + MSTB LTR MaLR 5 426 0 291 403 0 0 chr11 139519667 139519801 -11263752 + L3 LINE CR1 1443 1576 -1 456 250 47 23 chr11 139520023 139520195 -11263358 + MER5B DNA MER1_type 1 176 -2 1616 203 31 14 chr11 139521873 139522232 -11261321 - MLT1A1 LTR MaLR 0 365 1 266 255 264 0 chr11 139522626 139522732 -11260821 + MIR SINE MIR 19 152 -110 241 271 140 0 chr11 139524239 139524333 -11259220 - MIR SINE MIR -55 153 49 384 381 40 8 chr11 139524529 139524776 -11258777 - MIR SINE MIR -7 255 1 250 265 68 86 chr11 139525551 139525593 -11257960 - MIR3 SINE MIR -31 177 136 1299 252 32 22 chr11 139525593 139525962 -11257591 + MLT1A2 LTR MaLR 2 374 0 250 265 68 86 chr11 139525962 139526081 -11257472 - MIR3 SINE MIR -72 136 19 663 250 16 11 chr11 139529901 139530089 -11253464 + MER3 DNA MER1_type 21 209 0 1666 172 52 36 chr11 139530150 139530534 -11253019 - MSTB1 LTR MaLR 0 432 43 1271 266 63 9 chr11 139530546 139531004 -11252549 - L1ME3A LINE L1 -63 6107 5625 4713 256 58 28 chr11 139531247 139533451 -11250102 + L1MEc LINE L1 1882 4120 -2095 540 182 8 30 chr11 139533471 139533603 -11249950 + L1MB7 LINE L1 6025 6153 -31 295 304 89 21 chr11 139533705 139533985 -11249568 - L1MEc LINE L1 -4005 2391 2093 434 298 72 27 chr11 139534248 139534624 -11248929 - L1MEc LINE L1 -4687 1709 1317 221 274 30 67 chr11 139535162 139535326 -11248227 - L2 LINE L2 -95 3177 3020 324 274 110 20 chr11 139536449 139536595 -11246958 + MIR SINE MIR 33 191 -71 470 293 75 0 chr11 139536652 139536785 -11246768 + MIR SINE MIR 2 144 -118 461 297 123 0 chr11 139536931 139537150 -11246403 + LTR16A LTR ERVL 197 442 -8 259 172 52 35 chr11 139537471 139537529 -11246024 - MIR SINE MIR -70 192 134 2094 154 0 0 chr11 139537766 139538065 -11245488 + AluSx SINE Alu 5 303 -9 593 263 22 6 chr11 139538481 139538660 -11244893 - L1MB7 LINE L1 -207 5977 5796 3614 208 59 15 chr11 139538722 139539920 -11243633 - L1MC3 LINE L1 -743 5403 4917 424 195 0 0 chr11 139539920 139540002 -11243551 - L1MB2 LINE L1 -8 6163 6082 3614 208 59 15 chr11 139540002 139540178 -11243375 - L1MC3 LINE L1 -1229 4917 4750 27 29 0 0 chr11 139541062 139541096 -11242457 + AT_rich Low_complexity Low_complexity 1 34 0 801 281 18 9 chr11 139542818 139543039 -11240514 + MIR SINE MIR 13 235 -27 204 40 0 0 chr11 139543044 139543069 -11240484 + (TTA)n Simple_repeat Simple_repeat 3 27 0 200 302 104 0 chr11 139543070 139543166 -11240387 + MIR SINE MIR 86 191 -71 881 274 87 10 chr11 139543166 139543497 -11240056 + LTR16A LTR ERVL 25 392 -58 1979 215 33 20 chr11 139543497 139543957 -11239596 - LTR24 LTR ERV1 -1 466 1 881 274 87 10 chr11 139543957 139544015 -11239538 + LTR16A LTR ERVL 392 444 -6 688 280 6 11 chr11 139545839 139546021 -11237532 + MLT1C LTR MaLR 286 466 -1 253 297 85 79 chr11 139546498 139546828 -11236725 - MLT1J LTR MaLR -50 461 130 372 107 57 38 chr11 139549652 139549811 -11233742 + (TG)n Simple_repeat Simple_repeat 2 163 0 185 123 62 25 chr11 139549833 139549914 -11233639 + (TG)n Simple_repeat Simple_repeat 1 84 0 1910 140 0 0 chr11 139550294 139550602 -11232951 - L1P5 LINE L1 -432 5719 5412 869 158 6 18 chr11 139550602 139550766 -11232787 + L1PB1 LINE L1 5989 6151 0 604 164 0 0 chr11 139551215 139551319 -11232234 - L1MB2 LINE L1 -1 6170 6067 3175 136 102 5 chr11 139551664 139552243 -11231310 - LTR24C LTR ERV1 0 635 1 246 322 51 25 chr11 139552243 139552361 -11231192 - L2 LINE L2 0 3313 3193 366 187 13 27 chr11 139553627 139553777 -11229776 + GA-rich Low_complexity Low_complexity 3 150 0 450 0 0 0 chr11 139553863 139553913 -11229640 + (CA)n Simple_repeat Simple_repeat 1 50 0 528 305 53 30 chr11 139554861 139555123 -11228430 - HERVL40 LTR ERVL -4068 1462 1195 750 256 0 0 chr11 139555206 139555374 -11228179 - HERVL40 LTR ERVL -5346 184 17 2021 226 35 44 chr11 139555387 139555909 -11227644 - LTR40a LTR ERVL 0 519 3 332 312 88 16 chr11 139556053 139556178 -11227375 - L1ME LINE L1 -5927 143 10 * 583 348 154 28 chr11 139556173 139556570 -11226983 - L1M4 LINE L1 -980 5166 4720 289 313 35 21 chr11 139556638 139556782 -11226771 - L1M4 LINE L1 -1436 4710 4565 1828 216 52 103 chr11 139557480 139558190 -11225363 - LTR8A LTR ERV1 -21 706 33 182 344 33 16 chr11 139559122 139559183 -11224370 + MIR3 SINE MIR 14 75 -133 705 274 96 30 chr11 139560171 139560537 -11223016 - MLT1H1 LTR MaLR -22 567 157 1558 264 69 40 chr11 139560537 139561060 -11222493 + MER87 LTR ERV1 4 541 0 705 274 96 30 chr11 139561060 139561218 -11222335 - MLT1H1 LTR MaLR -432 157 11 394 227 140 22 chr11 139563197 139563385 -11220168 - MLT1D LTR MaLR -44 461 316 273 258 65 32 chr11 139563434 139563558 -11219995 - MLT1D LTR MaLR -347 158 31 359 360 60 7 chr11 139564151 139564301 -11219252 - MIR SINE MIR -89 173 16 221 318 62 68 chr11 139564913 139565089 -11218464 - L3b LINE CR1 -1 1582 1408 444 285 8 15 chr11 139565819 139565949 -11217604 + MER5B DNA MER1_type 49 177 -1 844 218 46 6 chr11 139566848 139567022 -11216531 - MER5A DNA MER1_type -7 182 2 256 354 69 23 chr11 139567780 139567955 -11215598 - MIR SINE MIR -6 256 74 333 305 78 0 chr11 139568004 139568158 -11215395 + MER69 DNA AcHobo 177 342 -2184 302 330 112 0 chr11 139568164 139568388 -11215165 + MER69 DNA AcHobo 1741 1989 -537 637 249 147 6 chr11 139569453 139569794 -11213759 + MER69 DNA AcHobo 2042 2430 -96 341 316 13 19 chr11 139569959 139570114 -11213439 + CT-rich Low_complexity Low_complexity 5 158 0 2269 269 42 15 chr11 139570494 139571311 -11212242 - L1ME2 LINE L1 -44 6120 5282 8739 225 129 29 chr11 139571325 139573034 -11210519 + L1P LINE L1 594 2131 -4015 2307 108 0 10 chr11 139573034 139573348 -11210205 + AluSx SINE Alu 1 311 -1 8739 225 129 29 chr11 139573348 139574956 -11208597 + L1P LINE L1 2131 4243 -1903 237 284 19 80 chr11 139576154 139576180 -11207373 - L1MA10 LINE L1 -3 6331 6306 613 266 97 14 chr11 139576180 139576206 -11207347 - L1ME2 LINE L1 -8 6156 6134 2207 130 3 0 chr11 139576206 139576506 -11207047 - AluSg SINE Alu -9 301 1 613 266 97 14 chr11 139576506 139577508 -11206045 - L1ME2 LINE L1 -30 6134 4985 350 340 74 18 chr11 139578074 139578359 -11205194 + ERVL LTR ERVL 4075 4375 -1389 304 300 37 34 chr11 139579287 139579603 -11203950 + ERVL LTR ERVL 4506 4695 -301 1288 207 65 31 chr11 139579913 139580266 -11203287 + MLT1A1 LTR MaLR 1 365 0 36 40 0 0 chr11 139581098 139581148 -11202405 + AT_rich Low_complexity Low_complexity 1 50 0 533 303 50 39 chr11 139581812 139582298 -11201255 - MER34 LTR ERV1 -10 697 1 199 371 10 0 chr11 139582472 139582569 -11200984 + L3 LINE CR1 430 527 -1050 245 285 15 29 chr11 139583208 139583345 -11200208 + (CA)n Simple_repeat Simple_repeat 2 136 0 769 282 32 16 chr11 139583698 139583950 -11199603 - MIR SINE MIR -6 256 1 580 214 51 22 chr11 139583953 139584131 -11199422 + MER53 DNA DNA 1 183 -6 2027 141 10 0 chr11 139585098 139585402 -11198151 - AluSx SINE Alu -5 307 1 25 31 0 0 chr11 139585734 139585766 -11197787 + AT_rich Low_complexity Low_complexity 1 32 0 3550 155 33 25 chr11 139585791 139586430 -11197123 - LTR48B LTR ERV1 0 644 1 552 299 34 4 chr11 139586698 139586932 -11196621 + L1M4 LINE L1 2467 2707 -3439 2007 136 39 14 chr11 139587084 139587445 -11196108 - L1PB3 LINE L1 -2 6152 5783 221 0 35 0 chr11 139587530 139587559 -11195994 + (TA)n Simple_repeat Simple_repeat 1 30 0 2645 113 10 2 chr11 139587572 139587979 -11195574 - L1PB3 LINE L1 -366 5788 5379 407 173 0 27 chr11 139587979 139588054 -11195499 - Tigger3(Golem) DNA MER2_type -62 2967 2895 265 229 0 16 chr11 139588071 139588132 -11195421 + L2 LINE L2 3254 3313 0 5655 150 53 31 chr11 139588266 139589435 -11194118 + Tigger3b DNA MER2_type 33 1227 -4 534 244 28 45 chr11 139589893 139590069 -11193484 + MIR SINE MIR 32 204 -58 227 233 17 0 chr11 139590119 139590179 -11193374 + (TA)n Simple_repeat Simple_repeat 1 61 0 441 0 0 0 chr11 139590998 139591047 -11192506 + (CACG)n Simple_repeat Simple_repeat 1 49 0 910 277 64 3 chr11 139591845 139592220 -11191333 - L1ME3A LINE L1 0 6170 5773 185 302 10 73 chr11 139592575 139592671 -11190882 + L3b LINE CR1 1384 1473 -110 354 272 72 16 chr11 139593898 139594023 -11189530 - MIR SINE MIR -9 253 122 191 333 0 0 chr11 139594052 139594115 -11189438 + L2 LINE L2 2678 2740 -574 226 370 43 0 chr11 139595705 139595843 -11187710 + L2 LINE L2 2914 3057 -215 1100 241 21 0 chr11 139596222 139596463 -11187090 - MLT1H1 LTR MaLR 0 555 310 660 322 28 16 chr11 139597188 139597505 -11186048 - L1 LINE L1 -3594 3512 3192 259 282 26 26 chr11 139597497 139597614 -11185939 - L1 LINE L1 -6913 117 1 * 445 0 33 16 chr11 139598758 139598819 -11184734 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 23351 39 3 2 chr11 139598819 139602429 -11181124 - L1PA5 LINE L1 -16 6138 2526 244 336 34 34 chr11 139602839 139602985 -11180568 + MIR3 SINE MIR 5 150 -58 233 0 62 0 chr11 139605272 139605304 -11178249 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 * 279 0 0 0 chr11 139605303 139605334 -11178219 + (CA)n Simple_repeat Simple_repeat 1 31 0 276 277 21 11 chr11 139605931 139606025 -11177528 + MIR SINE MIR 58 152 -110 1980 216 131 8 chr11 139610384 139610589 -11172964 + MER39 LTR ERV1 13 191 -516 1024 214 84 73 chr11 139610589 139611029 -11172524 + LTR56 LTR ERV1 1 445 0 1980 216 131 8 chr11 139611029 139611059 -11172494 + MER39 LTR ERV1 191 216 -491 4980 140 18 36 chr11 139611059 139611943 -11171610 - MER4D LTR ERV1 0 872 5 1980 216 131 8 chr11 139611943 139612325 -11171228 + MER39 LTR ERV1 216 707 0 471 186 14 86 chr11 139614990 139615130 -11168423 - MER20 DNA MER1_type -60 159 30 309 260 2 0 chr11 139617227 139617650 -11165903 + (TG)n Simple_repeat Simple_repeat 1 424 0 430 217 0 22 chr11 139617664 139617848 -11165705 + (TG)n Simple_repeat Simple_repeat 1 180 0 335 116 75 14 chr11 139618078 139618224 -11165329 + (TG)n Simple_repeat Simple_repeat 2 156 0 287 69 98 20 chr11 139618242 139618344 -11165209 + (GTGTG)n Simple_repeat Simple_repeat 1 110 0 407 110 72 38 chr11 139618351 139618837 -11164716 + (TG)n Simple_repeat Simple_repeat 1 502 0 355 54 61 54 chr11 139618865 139619012 -11164541 + (TG)n Simple_repeat Simple_repeat 1 148 0 188 292 28 0 chr11 139619471 139619543 -11164010 - L2 LINE L2 -668 2646 2573 2162 115 0 10 chr11 139619583 139619878 -11163675 + AluSq SINE Alu 1 292 -21 1451 167 48 69 chr11 139619878 139620255 -11163298 + L1M4 LINE L1 4278 4646 -1500 249 108 0 0 chr11 139620355 139620392 -11163161 + (TTCC)n Simple_repeat Simple_repeat 2 38 0 827 197 125 5 chr11 139620392 139620600 -11162953 + MLT1D LTR MaLR 260 492 -13 209 209 0 0 chr11 139622473 139622516 -11161037 + L2 LINE L2 3011 3053 -260 310 289 66 35 chr11 139622994 139623191 -11160362 - L3 LINE CR1 -750 827 625 243 278 14 14 chr11 139623461 139623533 -11160020 - L2 LINE L2 0 3272 3201 226 301 158 14 chr11 139623602 139623748 -11159805 + MIR SINE MIR 65 231 -31 807 282 53 19 chr11 139625636 139626051 -11157502 + L1M4 LINE L1 4959 5387 -759 850 240 47 27 chr11 139626059 139626355 -11157198 + L1MB4 LINE L1 1016 1317 -5225 9013 226 38 61 chr11 139626373 139629560 -11153993 + L1MA4A LINE L1 22 3928 -3637 5788 166 32 33 chr11 139629534 139631561 -11151992 + L1MA4A LINE L1 5692 7716 -6 * 1763 187 0 10 chr11 139631601 139631889 -11151664 + AluJo SINE Alu 1 287 -25 441 0 0 0 chr11 139631889 139631938 -11151615 + (CATA)n Simple_repeat Simple_repeat 2 50 0 1154 242 76 90 chr11 139631948 139632527 -11151026 + L1MB4 LINE L1 1312 1882 -4764 764 174 0 16 chr11 139632670 139632979 -11150574 + GA-rich Low_complexity Low_complexity 1 303 0 7199 222 55 104 chr11 139632981 139633836 -11149717 + L1MB4 LINE L1 1914 2809 -3869 741 161 0 8 chr11 139633836 139633960 -11149593 + FLAM_C SINE Alu 3 125 -8 7199 222 55 104 chr11 139633960 139634433 -11149120 + L1MB4 LINE L1 2809 3304 -3374 303 29 0 0 chr11 139634433 139634467 -11149086 - U2 snRNA snRNA -154 34 1 7199 222 55 104 chr11 139634467 139634745 -11148808 + L1MB4 LINE L1 3304 3594 -3084 809 196 72 75 chr11 139634745 139635010 -11148543 - MLT1B LTR MaLR 0 390 127 7199 222 55 104 chr11 139635010 139635036 -11148517 + L1MB4 LINE L1 3594 3620 -3058 218 57 57 0 chr11 139635036 139635071 -11148482 + (CATA)n Simple_repeat Simple_repeat 2 38 0 189 0 0 0 chr11 139635070 139635091 -11148462 + (TAGA)n Simple_repeat Simple_repeat 2 22 0 * 7199 222 55 104 chr11 139635071 139635820 -11147733 + L1MB4 LINE L1 3620 4404 -2274 1022 213 109 55 chr11 139635820 139636224 -11147329 + MSTB LTR MaLR 1 426 0 7199 222 55 104 chr11 139636224 139638385 -11145168 + L1MB4 LINE L1 4404 6517 -161 1347 149 35 4 chr11 139638407 139638843 -11144710 - LTR54 LTR ERV1 0 510 1 934 164 12 0 chr11 139638844 139639015 -11144538 + L1MB4 LINE L1 6504 6676 -2 180 386 14 0 chr11 139639767 139639837 -11143716 + MIR SINE MIR 13 83 -179 269 304 10 10 chr11 139639871 139639973 -11143580 + MIR SINE MIR 155 256 -6 430 180 0 41 chr11 139639973 139640095 -11143458 + CT-rich Low_complexity Low_complexity 3 119 0 326 284 11 0 chr11 139640166 139640261 -11143292 + MER5A DNA MER1_type 10 105 -84 307 325 34 0 chr11 139641885 139642002 -11141551 + MIR3 SINE MIR 82 202 -6 283 278 126 20 chr11 139642673 139642824 -11140729 + MIR SINE MIR 83 249 -13 194 338 25 0 chr11 139644848 139644928 -11138625 - MIR SINE MIR -72 190 109 1608 226 51 124 chr11 139646701 139647602 -11135951 + L1MC5 LINE L1 6636 7470 -491 2519 46 13 19 chr11 139647642 139647949 -11135604 + AluY SINE Alu 1 305 -6 312 196 10 41 chr11 139647960 139648057 -11135496 + L1MC5 LINE L1 7609 7702 -259 258 152 136 15 chr11 139648310 139648376 -11135177 + L1MC5 LINE L1 7707 7780 -181 638 176 9 0 chr11 139648413 139648521 -11135032 - LTR26B LTR ERV1 -422 109 1 379 220 9 151 chr11 139648847 139649079 -11134474 - L1MC5 LINE L1 -50 7911 7713 316 300 38 86 chr11 139649107 139649420 -11134133 - L1MC4a LINE L1 -80 7728 7431 2177 153 7 32 chr11 139649827 139650232 -11133321 - L1MA4 LINE L1 -6 6294 5900 235 283 51 36 chr11 139650393 139650531 -11133022 - L1MC4 LINE L1 -969 7073 6934 454 214 39 52 chr11 139650567 139650721 -11132832 - L1MC4 LINE L1 -1094 6948 6797 974 249 115 14 chr11 139650855 139651245 -11132308 + L1ME2 LINE L1 5671 6095 -69 1752 107 17 0 chr11 139652925 139653159 -11130394 - AluSq SINE Alu -75 238 1 1537 211 14 34 chr11 139655335 139655446 -11128107 + MER7A DNA MER2_type 1 113 -2925 2254 121 0 6 chr11 139655446 139655759 -11127794 - AluSx SINE Alu -1 311 1 1537 211 14 34 chr11 139655759 139656002 -11127551 + MER7A DNA MER2_type 113 346 0 254 259 19 74 chr11 139656703 139656811 -11126742 - MER5B DNA MER1_type -12 166 65 255 359 24 18 chr11 139656873 139657043 -11126510 + MER5B DNA MER1_type 8 178 0 2061 114 3 10 chr11 139657619 139657908 -11125645 - AluSc SINE Alu -22 287 1 318 285 62 122 chr11 139658675 139659174 -11124379 + L2 LINE L2 2246 2714 -600 637 167 0 9 chr11 139659174 139659282 -11124271 + AluJb SINE Alu 172 278 -34 192 40 0 0 chr11 139659282 139659307 -11124246 + (TC)n Simple_repeat Simple_repeat 2 26 0 421 156 21 0 chr11 139659307 139659403 -11124150 + (TA)n Simple_repeat Simple_repeat 2 99 0 192 40 0 0 chr11 139659412 139659437 -11124116 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 361 325 6 19 chr11 139660960 139661120 -11122433 + GA-rich Low_complexity Low_complexity 2 159 0 2762 250 118 9 chr11 139661896 139663325 -11120228 - L1MD2 LINE L1 -23 6336 4751 2235 194 77 9 chr11 139663329 139663783 -11119770 - Tigger5 DNA MER2_type -1 2322 1838 1229 170 42 0 chr11 139663789 139664001 -11119552 - Tigger5 DNA MER2_type -2102 221 1 2283 257 100 48 chr11 139664007 139665375 -11118178 - L1MD2 LINE L1 -1403 4743 3305 410 152 72 3 chr11 139666374 139666494 -11117059 - L1ME1 LINE L1 -334 5832 5732 775 224 50 41 chr11 139666508 139666727 -11116826 + MLT1D LTR MaLR 1 221 -284 1205 210 40 7 chr11 139667807 139668079 -11115474 - L1MC2 LINE L1 -2 6342 6062 438 325 18 6 chr11 139668083 139668249 -11115304 + MER8 DNA MER2_type 10 177 -62 397 195 0 26 chr11 139668277 139668354 -11115199 - Tigger2 DNA MER2_type -2641 77 3 381 200 12 0 chr11 139668356 139668436 -11115117 - L1MC2 LINE L1 -285 6059 5979 697 278 48 8 chr11 139668443 139668691 -11114862 + L1MEc LINE L1 1561 1818 -4578 344 250 39 10 chr11 139668720 139668824 -11114729 + L1MEc LINE L1 1963 2069 -4327 2037 134 6 13 chr11 139668914 139669227 -11114326 - AluSx SINE Alu -1 311 1 601 271 129 13 chr11 139670266 139670491 -11113062 - MIR SINE MIR -10 252 2 266 299 15 22 chr11 139670607 139670741 -11112812 + (TATATG)n Simple_repeat Simple_repeat 2 134 0 413 289 135 29 chr11 139671439 139671566 -11111987 - L1ME4a LINE L1 -44 6077 5965 1584 152 19 10 chr11 139671566 139671875 -11111678 + AluSx SINE Alu 1 312 0 413 289 135 29 chr11 139671875 139671886 -11111667 - L1ME4a LINE L1 -156 5965 5957 1706 181 0 9 chr11 139671886 139672201 -11111352 + AluJo SINE Alu 1 312 0 413 289 135 29 chr11 139672201 139672573 -11110980 - L1ME4a LINE L1 -164 5957 5512 292 184 37 22 chr11 139672604 139672740 -11110813 + (TA)n Simple_repeat Simple_repeat 1 138 0 282 95 0 0 chr11 139672739 139672781 -11110772 + (GA)n Simple_repeat Simple_repeat 2 43 0 * 2149 119 0 0 chr11 139675184 139675495 -11108058 - AluY SINE Alu 0 311 1 2444 280 64 27 chr11 139675787 139677284 -11106269 + L1MEc LINE L1 2200 3751 -2464 842 282 67 51 chr11 139677608 139677998 -11105555 - L2 LINE L2 -8 3305 2910 1014 256 130 47 chr11 139678226 139678672 -11104881 + MLT1D LTR MaLR 23 505 0 361 265 94 53 chr11 139678715 139678960 -11104593 + L1MCc LINE L1 62 316 -6107 240 59 0 0 chr11 139679183 139679217 -11104336 + (GA)n Simple_repeat Simple_repeat 1 34 0 2012 255 75 21 chr11 139679317 139679980 -11103573 + L1MC4a LINE L1 7110 7808 0 180 0 0 0 chr11 139680105 139680125 -11103428 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1917 140 7 10 chr11 139680142 139680450 -11103103 + AluSx SINE Alu 3 309 -3 428 279 153 44 chr11 139681014 139681419 -11102134 + LTR50 LTR ERVL 195 643 -152 192 229 82 16 chr11 139681464 139681525 -11102028 + MIR SINE MIR 122 186 -76 197 389 67 0 chr11 139681823 139681913 -11101640 - MIR SINE MIR -81 127 32 249 268 142 71 chr11 139682004 139682131 -11101422 - MIR3 SINE MIR -62 146 11 254 122 102 0 chr11 139684282 139684331 -11099222 - MLT2A1 LTR ERVL 0 444 391 1587 141 20 26 chr11 139684468 139684774 -11098779 - MLT2A1 LTR ERVL -97 347 44 260 105 0 0 chr11 139684768 139684806 -11098747 - MLT2A1 LTR ERVL -367 86 49 * 306 48 24 0 chr11 139684804 139684846 -11098707 - MLT2A1 LTR ERVL -353 91 49 * 738 44 0 0 chr11 139684844 139684935 -11098618 - MLT2A1 LTR ERVL -353 91 1 505 234 65 43 chr11 139685375 139685559 -11097994 - MIR SINE MIR -73 189 2 267 323 102 16 chr11 139685559 139685681 -11097872 + MIR SINE MIR 112 249 -13 22 0 0 0 chr11 139685881 139685903 -11097650 + AT_rich Low_complexity Low_complexity 1 22 0 360 289 0 10 chr11 139686609 139686706 -11096847 + L1MC4 LINE L1 6608 6703 -1339 326 208 28 14 chr11 139686711 139686783 -11096770 + L1MC4 LINE L1 1996 2068 -4358 336 333 0 0 chr11 139686798 139686888 -11096665 + L1MC4 LINE L1 6614 6703 -1339 327 203 27 40 chr11 139686891 139686965 -11096588 + L1MC4 LINE L1 1996 2068 -4358 310 356 0 0 chr11 139686930 139687020 -11096533 - L1MC4 LINE L1 -1339 6703 6614 * 345 270 0 9 chr11 139686976 139687087 -11096466 + L1MC4 LINE L1 1995 6983 -1339 332 333 0 0 chr11 139687070 139687160 -11096393 + L1MC4 LINE L1 6894 6983 -1339 * 350 253 31 15 chr11 139687157 139687282 -11096271 + L1MC4 LINE L1 1996 6983 -1339 328 232 14 0 chr11 139687250 139687319 -11096234 + L1MC4 LINE L1 1995 2064 -4362 * 307 367 0 0 chr11 139687322 139687412 -11096141 - L1MC4 LINE L1 -1339 6703 6614 * 339 229 0 42 chr11 139687341 139687451 -11096102 + L1MC4 LINE L1 1996 6983 -1339 317 237 0 40 chr11 139687477 139687553 -11096000 + L1MC4 LINE L1 1996 2068 -4358 * 339 256 29 0 chr11 139687532 139687636 -11095917 + L1MC4 LINE L1 1996 6983 -1339 351 322 0 0 chr11 139687645 139687735 -11095818 + L1MC4 LINE L1 6614 6703 -1339 335 225 25 12 chr11 139687738 139687818 -11095735 + L1MC1 LINE L1 1996 2076 -4350 322 318 62 23 chr11 139688181 139688357 -11095196 + LTR33 LTR ERVL 337 519 -2 1872 166 0 6 chr11 139688599 139688913 -11094640 + AluSx SINE Alu 1 312 0 3869 231 47 5 chr11 139689043 139690145 -11093408 + L1MC1 LINE L1 3200 4347 -2079 558 87 0 87 chr11 139690158 139690331 -11093222 + (TTCCC)n Simple_repeat Simple_repeat 3 160 0 208 139 0 28 chr11 139690332 139690368 -11093185 + (TCTCC)n Simple_repeat Simple_repeat 1 35 0 1488 206 13 19 chr11 139690368 139690678 -11092875 - AluJo SINE Alu 0 312 5 5673 201 35 8 chr11 139690682 139691523 -11092030 + L1MC1 LINE L1 4379 5195 -1418 351 0 0 0 chr11 139691523 139691562 -11091991 + (CA)n Simple_repeat Simple_repeat 2 40 0 5673 201 35 8 chr11 139691562 139692894 -11090659 + L1MC1 LINE L1 5195 6613 0 3950 210 72 13 chr11 139692890 139694656 -11088897 + L1MB7 LINE L1 4257 6124 -60 * 1402 197 13 13 chr11 139694657 139694956 -11088597 - AluJo SINE Alu -13 299 1 527 218 38 38 chr11 139695126 139695259 -11088294 - MER93b LTR ERV1 -240 133 1 237 250 56 0 chr11 139697230 139697302 -11086251 + MIR SINE MIR 68 143 -65 502 217 103 50 chr11 139698929 139699232 -11084321 - L1MA9 LINE L1 -19 6293 5959 275 127 48 0 chr11 139699288 139699351 -11084202 - L1MA9 LINE L1 -288 6024 5959 * 1219 158 41 0 chr11 139699347 139699568 -11083985 - L1MA9 LINE L1 -288 6024 5795 306 0 0 0 chr11 139699568 139699602 -11083951 + (TG)n Simple_repeat Simple_repeat 2 35 0 1569 165 112 22 chr11 139699602 139699923 -11083630 + L1M2 LINE L1 5431 5780 -511 431 363 41 0 chr11 139700215 139700386 -11083167 - MER5B DNA MER1_type 0 178 1 361 318 8 16 chr11 139702040 139702166 -11081387 - ERVL LTR ERVL -1475 4289 4165 369 352 69 23 chr11 139702239 139702543 -11081010 - ERVL LTR ERVL -1646 4008 3691 1740 253 35 6 chr11 139703982 139704492 -11079061 + LTR45 LTR ERV1 1 525 0 333 349 0 0 chr11 139706147 139706256 -11077297 + (TG)n Simple_repeat Simple_repeat 2 110 0 1658 205 52 62 chr11 139707727 139708224 -11075329 - MLT1D LTR MaLR -13 492 1 2001 130 3 0 chr11 139708355 139708655 -11074898 + AluSx SINE Alu 1 301 -11 536 130 0 0 chr11 139709717 139709794 -11073759 + AluS SINE Alu 2 78 -235 254 312 43 0 chr11 139710724 139710817 -11072736 - L1MEc LINE L1 -6047 349 253 327 313 10 0 chr11 139711556 139711652 -11071901 - L2 LINE L2 -16 3256 3160 1731 106 106 0 chr11 139713478 139713742 -11069811 + AluSg SINE Alu 1 292 -18 21 0 0 0 chr11 139715547 139715568 -11067985 + AT_rich Low_complexity Low_complexity 1 21 0 226 317 48 10 chr11 139715571 139715675 -11067878 + MIR SINE MIR 45 152 -56 2213 208 38 22 chr11 139715773 139716269 -11067284 + MLT2B3 LTR ERVL 5 508 -46 1581 143 18 11 chr11 139716290 139716598 -11066955 - AluY SINE Alu 0 312 3 230 337 12 0 chr11 139717288 139717374 -11066179 + MER20 DNA MER1_type 1 87 -132 1202 196 54 24 chr11 139717379 139717716 -11065837 - MER54B LTR ERVL 0 793 539 536 225 67 0 chr11 139717855 139717975 -11065578 + MER20 DNA MER1_type 90 217 -2 503 300 149 54 chr11 139719025 139719546 -11064007 + L2 LINE L2 2739 3298 -15 182 353 0 0 chr11 139719590 139719658 -11063895 + MIR3 SINE MIR 114 181 -27 2138 104 7 0 chr11 139719896 139720184 -11063369 + AluSp SINE Alu 3 292 -21 488 165 77 0 chr11 139722132 139722223 -11061330 + MER4A LTR ERV1 1 98 -566 1757 142 23 19 chr11 139722223 139722567 -11060986 + MER4A LTR ERV1 261 664 0 256 218 18 176 chr11 139722642 139722807 -11060746 - L2 LINE L2 -6 3307 3169 999 240 22 96 chr11 139724824 139724977 -11058576 - L1 LINE L1 -900 5246 5083 1256 161 41 0 chr11 139724977 139725219 -11058334 - L1MA9 LINE L1 0 6312 6061 999 240 22 96 chr11 139725219 139725604 -11057949 - L1 LINE L1 -1063 5083 4775 * 3654 165 66 57 chr11 139725603 139726462 -11057091 + L1MA8 LINE L1 5254 6120 -171 645 180 42 36 chr11 139727219 139727386 -11056167 - MER53 DNA DNA -1 188 21 1943 254 57 25 chr11 139727386 139728035 -11055518 - L1MC3 LINE L1 -8 7777 7108 371 309 140 7 chr11 139730786 139730922 -11052631 + MIR SINE MIR 48 201 -61 198 319 53 71 chr11 139732813 139732982 -11050571 + MIR3 SINE MIR 34 199 -9 399 41 0 0 chr11 139733355 139733404 -11050149 + (CA)n Simple_repeat Simple_repeat 2 50 0 1119 203 52 132 chr11 139733750 139734582 -11048971 - L1MEc LINE L1 -1066 5875 5111 2693 197 44 151 chr11 139734598 139735306 -11048247 - L1MC3 LINE L1 -3 7782 7140 301 279 19 19 chr11 139735306 139735410 -11048143 - MLT1F1 LTR MaLR -439 128 25 2693 197 44 151 chr11 139735410 139735803 -11047750 - L1MC3 LINE L1 -645 7140 6707 763 227 143 46 chr11 139735802 139736256 -11047297 - L1MEc LINE L1 -1817 5124 4627 * 1055 258 104 73 chr11 139736292 139736924 -11046629 - MER21B LTR ERV1 -211 652 1 1548 273 45 73 chr11 139736924 139737814 -11045739 - L1MEc LINE L1 -2313 4628 3715 2220 168 28 19 chr11 139737814 139738242 -11045311 + MSTB1 LTR MaLR 1 432 0 1548 273 45 73 chr11 139738242 139739078 -11044475 - L1MEc LINE L1 -3226 3715 1150 242 247 13 39 chr11 139739665 139739742 -11043811 - L1MEc LINE L1 -5671 751 677 303 260 40 10 chr11 139739907 139740007 -11043546 - L1MEc LINE L1 -6270 153 51 263 246 194 20 chr11 139740050 139740127 -11043426 - L1MEc LINE L1 -4253 2143 2081 279 54 0 0 chr11 139740127 139740164 -11043389 + (CA)n Simple_repeat Simple_repeat 2 38 0 263 246 194 20 chr11 139740164 139740334 -11043219 - L1MEc LINE L1 -4315 2081 1853 1715 137 7 7 chr11 139740335 139740606 -11042947 - AluSg SINE Alu -17 293 23 233 122 49 0 chr11 139740820 139740861 -11042692 + MLT2A1 LTR ERVL 402 444 0 1072 223 98 42 chr11 139740935 139741271 -11042282 + MLT1A1 LTR MaLR 11 365 0 586 304 8 59 chr11 139742391 139742464 -11041089 - MIR SINE MIR 0 262 187 2121 132 59 6 chr11 139742464 139742820 -11040733 - L1PA13 LINE L1 -6 6157 5783 586 304 8 59 chr11 139742820 139742999 -11040554 - MIR SINE MIR -75 187 23 241 314 49 63 chr11 139743232 139743443 -11040110 - L1M4 LINE L1 -2396 3750 3545 1844 150 17 0 chr11 139743443 139743743 -11039810 + AluSx SINE Alu 1 305 -7 241 314 49 63 chr11 139743743 139743897 -11039656 - L1M4 LINE L1 -2601 3545 3390 322 306 71 12 chr11 139744053 139744223 -11039330 - L1M4 LINE L1 -2954 3192 3013 2205 77 3 20 chr11 139744847 139745146 -11038407 - AluY SINE Alu -17 294 1 2399 60 7 0 chr11 139745771 139746072 -11037481 - AluY SINE Alu -8 303 1 545 259 44 123 chr11 139747695 139748174 -11035379 - L1M4 LINE L1 -1086 5060 4620 661 333 67 17 chr11 139749155 139749363 -11034190 + LTR16A1 LTR ERVL 95 291 -166 2283 121 33 33 chr11 139749363 139749727 -11033826 + THE1B LTR MaLR 1 364 0 11677 94 14 0 chr11 139749727 139751286 -11032267 + THE1B-int LTR MaLR 1 1580 0 1887 149 37 69 chr11 139751286 139751662 -11031891 + THE1B LTR MaLR 1 364 0 661 333 67 17 chr11 139751662 139751796 -11031757 + LTR16A1 LTR ERVL 290 456 -1 290 328 8 15 chr11 139752250 139752384 -11031169 - L1ME LINE L1 -502 5737 5605 1416 173 94 44 chr11 139752801 139753119 -11030434 + MER44D DNA MER2_type 1 604 -5 367 320 73 73 chr11 139753178 139753481 -11030072 + L1ME3A LINE L1 5764 6066 -104 3305 273 36 27 chr11 139754051 139754432 -11029121 - L1MEc LINE L1 -2577 3638 3262 2151 94 27 7 chr11 139754432 139754731 -11028822 - AluSq SINE Alu -8 305 1 3305 273 36 27 chr11 139754731 139756896 -11026657 - L1MEc LINE L1 -2953 3262 2041 551 297 142 29 chr11 139756900 139757972 -11025581 - L1MEc LINE L1 -4497 1899 707 533 347 34 4 chr11 139758278 139758543 -11025010 - L1MEc LINE L1 -6032 364 92 351 238 48 48 chr11 139758819 139758945 -11024608 + L2 LINE L2 3139 3264 -8 216 404 0 35 chr11 139759116 139759257 -11024296 - MIR SINE MIR -74 188 53 206 308 15 0 chr11 139760507 139760572 -11022981 - MIR SINE MIR -113 149 84 245 271 115 57 chr11 139760622 139760744 -11022809 + L2 LINE L2 3139 3267 -5 267 114 0 0 chr11 139760759 139760803 -11022750 + (TG)n Simple_repeat Simple_repeat 2 45 0 254 50 25 0 chr11 139761271 139761311 -11022242 + (TG)n Simple_repeat Simple_repeat 2 42 0 254 217 36 48 chr11 139761728 139761811 -11021742 - MIR SINE MIR -27 235 154 2198 98 0 0 chr11 139762492 139762789 -11020764 + AluSc SINE Alu 1 297 -12 1306 152 25 0 chr11 139763325 139763562 -11019991 - L1MA7 LINE L1 0 6291 6049 1850 139 7 4 chr11 139765845 139766171 -11017382 + AluSx SINE Alu 1 327 0 258 357 0 0 chr11 139766846 139766952 -11016601 + MIR SINE MIR 38 143 -65 535 329 83 36 chr11 139768304 139768857 -11014696 + L2 LINE L2 2081 2659 -655 570 265 77 43 chr11 139769477 139769711 -11013842 + MIR SINE MIR 7 248 -14 464 185 54 46 chr11 139769741 139769871 -11013682 + MLT1D LTR MaLR 1 131 -374 262 293 73 60 chr11 139770204 139770354 -11013199 - MIR SINE MIR -109 153 2 282 333 0 9 chr11 139771426 139771534 -11012019 + MER5B DNA MER1_type 72 178 0 221 310 53 0 chr11 139772263 139772376 -11011177 - MER5A DNA MER1_type -63 126 8 195 184 0 0 chr11 139772889 139772927 -11010626 + (ATG)n Simple_repeat Simple_repeat 3 40 0 225 287 74 41 chr11 139773840 139773962 -11009591 - MIR SINE MIR -71 191 66 205 284 189 16 chr11 139774977 139775104 -11008449 + L2 LINE L2 3122 3270 -2 455 276 43 89 chr11 139775945 139776485 -11007068 - L1M4 LINE L1 -2517 3865 3351 270 268 27 0 chr11 139776677 139776789 -11006764 + (TA)n Simple_repeat Simple_repeat 2 116 0 341 336 133 12 chr11 139776841 139777097 -11006456 - L1M4 LINE L1 -4635 1749 1463 235 100 0 0 chr11 139777161 139777201 -11006352 - L1MA4 LINE L1 -151 6149 6110 * 464 181 4 0 chr11 139777196 139777288 -11006265 - L1MA4 LINE L1 -45 6260 6162 1140 239 245 13 chr11 139779997 139780474 -11003079 - Charlie1 DNA MER1_type -751 2010 1423 290 266 0 53 chr11 139780946 139781040 -11002513 - MIR SINE MIR -71 191 103 2148 151 25 63 chr11 139781975 139782418 -11001135 + MSTB LTR MaLR 1 426 0 838 188 6 18 chr11 139783738 139783903 -10999650 - FRAM SINE Alu 0 166 4 1749 262 114 12 chr11 139783928 139784426 -10999127 - L1MC3 LINE L1 -221 7564 6985 186 43 0 0 chr11 139784426 139784449 -10999104 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 1749 262 114 12 chr11 139784449 139784588 -10998965 - L1MC3 LINE L1 -800 6985 6862 577 211 0 12 chr11 139784588 139784927 -10998626 + (TG)n Simple_repeat Simple_repeat 1 334 0 1914 199 37 65 chr11 139784938 139785401 -10998152 - L1MC3 LINE L1 -931 6854 6405 191 278 93 56 chr11 139785525 139785633 -10997920 - L2 LINE L2 -1889 1425 1314 246 306 131 34 chr11 139789544 139789927 -10993626 - L2 LINE L2 -2335 979 560 1497 111 0 0 chr11 139791106 139791305 -10992248 + AluY SINE Alu 39 237 -74 646 23 35 0 chr11 139791325 139791412 -10992141 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 1338 212 19 39 chr11 139791480 139791791 -10991762 + L1MB1 LINE L1 5863 6167 -1 2084 155 128 5 chr11 139792440 139792815 -10990738 + MSTA LTR MaLR 1 421 -7 240 118 0 0 chr11 139792872 139792906 -10990647 + MER107 DNA MER1_type 1 34 -163 252 88 0 0 chr11 139792911 139792945 -10990608 + MER107 DNA MER1_type 1 34 -163 247 88 0 0 chr11 139792951 139792985 -10990568 + MER107 DNA MER1_type 1 34 -163 263 59 0 0 chr11 139792991 139793025 -10990528 + MER107 DNA MER1_type 1 34 -163 263 59 0 0 chr11 139793031 139793065 -10990488 + MER107 DNA MER1_type 1 34 -163 243 88 0 0 chr11 139793071 139793105 -10990448 + MER107 DNA MER1_type 1 34 -163 243 88 0 0 chr11 139793111 139793145 -10990408 + MER107 DNA MER1_type 1 34 -163 241 62 0 0 chr11 139793151 139793183 -10990370 + MER107 DNA MER1_type 1 32 -165 263 59 0 0 chr11 139793191 139793225 -10990328 + MER107 DNA MER1_type 1 34 -163 252 88 0 0 chr11 139793231 139793265 -10990288 + MER107 DNA MER1_type 1 34 -163 263 59 0 0 chr11 139793271 139793305 -10990248 + MER107 DNA MER1_type 1 34 -163 233 118 0 0 chr11 139793311 139793345 -10990208 + MER107 DNA MER1_type 1 34 -163 263 59 0 0 chr11 139793351 139793385 -10990168 + MER107 DNA MER1_type 1 34 -163 263 59 0 0 chr11 139793391 139793425 -10990128 + MER107 DNA MER1_type 1 34 -163 229 88 0 0 chr11 139793431 139793465 -10990088 + MER107 DNA MER1_type 1 34 -163 263 59 0 0 chr11 139793471 139793505 -10990048 + MER107 DNA MER1_type 1 34 -163 229 88 0 0 chr11 139793511 139793545 -10990008 + MER107 DNA MER1_type 1 34 -163 229 88 0 0 chr11 139793551 139793585 -10989968 + MER107 DNA MER1_type 1 34 -163 230 118 0 0 chr11 139793591 139793625 -10989928 + MER107 DNA MER1_type 1 34 -163 243 88 0 0 chr11 139793631 139793665 -10989888 + MER107 DNA MER1_type 1 34 -163 243 88 0 0 chr11 139793671 139793705 -10989848 + MER107 DNA MER1_type 1 34 -163 263 59 0 0 chr11 139793711 139793745 -10989808 + MER107 DNA MER1_type 1 34 -163 229 88 0 0 chr11 139793751 139793785 -10989768 + MER107 DNA MER1_type 1 34 -163 271 59 0 0 chr11 139793791 139793825 -10989728 + MER107 DNA MER1_type 1 34 -163 252 88 0 0 chr11 139793830 139793864 -10989689 + MER107 DNA MER1_type 1 34 -163 263 59 0 0 chr11 139793870 139793904 -10989649 + MER107 DNA MER1_type 1 34 -163 252 88 0 0 chr11 139793910 139793944 -10989609 + MER107 DNA MER1_type 1 34 -163 232 88 0 0 chr11 139793950 139793984 -10989569 + MER107 DNA MER1_type 1 34 -163 247 88 0 0 chr11 139794069 139794103 -10989450 + MER107 DNA MER1_type 1 34 -163 263 59 0 0 chr11 139794109 139794143 -10989410 + MER107 DNA MER1_type 1 34 -163 241 62 0 0 chr11 139794149 139794181 -10989372 + MER107 DNA MER1_type 1 32 -165 229 88 0 0 chr11 139794189 139794223 -10989330 + MER107 DNA MER1_type 1 34 -163 262 31 0 0 chr11 139794229 139794261 -10989292 + MER107 DNA MER1_type 1 32 -165 252 88 0 0 chr11 139794309 139794343 -10989210 + MER107 DNA MER1_type 1 34 -163 243 88 0 0 chr11 139794349 139794383 -10989170 + MER107 DNA MER1_type 1 34 -163 243 88 0 0 chr11 139794389 139794423 -10989130 + MER107 DNA MER1_type 1 34 -163 230 118 0 0 chr11 139794509 139794543 -10989010 + MER107 DNA MER1_type 1 34 -163 247 88 0 0 chr11 139794549 139794583 -10988970 + MER107 DNA MER1_type 1 34 -163 247 88 0 0 chr11 139794589 139794623 -10988930 + MER107 DNA MER1_type 1 34 -163 263 59 0 0 chr11 139794629 139794663 -10988890 + MER107 DNA MER1_type 1 34 -163 235 118 0 0 chr11 139794669 139794703 -10988850 + MER107 DNA MER1_type 1 34 -163 252 88 0 0 chr11 139794709 139794743 -10988810 + MER107 DNA MER1_type 1 34 -163 263 59 0 0 chr11 139794788 139794822 -10988731 + MER107 DNA MER1_type 1 34 -163 243 88 0 0 chr11 139794828 139794862 -10988691 + MER107 DNA MER1_type 1 34 -163 250 62 0 0 chr11 139794868 139794900 -10988653 + MER107 DNA MER1_type 1 32 -165 252 88 0 0 chr11 139794908 139794942 -10988611 + MER107 DNA MER1_type 1 34 -163 229 88 0 0 chr11 139794948 139794982 -10988571 + MER107 DNA MER1_type 1 34 -163 252 88 0 0 chr11 139794988 139795022 -10988531 + MER107 DNA MER1_type 1 34 -163 247 103 26 0 chr11 139795067 139795106 -10988447 + MER107 DNA MER1_type 1 40 -157 250 62 0 0 chr11 139795145 139795177 -10988376 + MER107 DNA MER1_type 1 32 -165 247 88 0 0 chr11 139795265 139795299 -10988254 + MER107 DNA MER1_type 1 34 -163 263 59 0 0 chr11 139795305 139795339 -10988214 + MER107 DNA MER1_type 1 34 -163 263 59 0 0 chr11 139795345 139795379 -10988174 + MER107 DNA MER1_type 1 34 -163 364 65 0 0 chr11 139795385 139795431 -10988122 + MER107 DNA MER1_type 1 46 -151 390 263 0 0 chr11 139795674 139795750 -10987803 + MER21B LTR ERV1 12 87 -776 630 194 183 17 chr11 139795775 139795955 -10987598 + MER21B LTR ERV1 20 229 -634 565 206 20 123 chr11 139795956 139796257 -10987296 + L1MC5 LINE L1 6833 7102 -859 1457 208 52 75 chr11 139797238 139797680 -10985873 - MSTB1 LTR MaLR 0 432 1 1413 79 37 0 chr11 139797979 139798169 -10985384 + MER107 DNA MER1_type 1 197 0 1008 243 39 25 chr11 139798809 139799147 -10984406 + L1M4 LINE L1 5221 5562 -612 413 315 128 0 chr11 139799410 139799613 -10983940 - MIR SINE MIR -26 236 8 335 320 10 46 chr11 139799657 139799851 -10983702 - MIR SINE MIR -56 206 20 337 344 89 0 chr11 139801019 139801199 -10982354 - MIR SINE MIR -12 250 55 303 256 110 0 chr11 139801240 139801322 -10982231 + MIR SINE MIR 102 192 -70 218 269 8 108 chr11 139802427 139802557 -10980996 - L2 LINE L2 -16 3256 3140 7196 241 86 26 chr11 139804015 139805238 -10978315 - L1M4 LINE L1 -1440 5204 4056 1828 164 0 32 chr11 139805238 139805550 -10978003 - AluJo SINE Alu -10 302 1 7196 241 86 26 chr11 139805550 139808325 -10975228 - L1M4 LINE L1 -2588 4056 775 2200 142 0 0 chr11 139808325 139808635 -10974918 - AluSg SINE Alu 0 310 1 7196 241 86 26 chr11 139808635 139809446 -10974107 - L1M4 LINE L1 -5869 775 14 1890 211 74 42 chr11 139810537 139811063 -10972490 - MER44D DNA MER2_type -7 598 1 2524 69 0 3 chr11 139811833 139812139 -10971414 - AluY SINE Alu -6 305 1 280 310 19 56 chr11 139812327 139812543 -10971010 + L1M4c LINE L1 1 208 -6822 2995 260 59 42 chr11 139812869 139812925 -10970628 + L1M4c LINE L1 1272 1326 -5782 354 61 0 0 chr11 139812925 139812974 -10970579 + (CA)n Simple_repeat Simple_repeat 1 49 0 2995 260 59 42 chr11 139812974 139814226 -10969327 + L1M4c LINE L1 1326 2602 -4506 1318 176 59 0 chr11 139814229 139814502 -10969051 + L1MB3 LINE L1 5881 6169 -14 1161 209 62 13 chr11 139814249 139814543 -10969010 + L1MB3 LINE L1 5901 6153 -30 24 0 0 0 chr11 139814543 139814567 -10968986 + AT_rich Low_complexity Low_complexity 1 24 0 1161 209 62 13 chr11 139814567 139814585 -10968968 + L1MB3 LINE L1 6153 6169 -14 552 208 0 0 chr11 139814587 139814683 -10968870 - FLAM_A SINE Alu -22 120 25 180 324 29 20 chr11 139814723 139814825 -10968728 - L2 LINE L2 -98 3215 3113 876 186 62 0 chr11 139814830 139814991 -10968562 + FAM SINE Alu 1 171 -4 778 353 66 8 chr11 139815301 139815785 -10967768 - L2 LINE L2 -578 2736 2225 192 297 0 87 chr11 139815811 139815949 -10967604 - L2 LINE L2 -1230 2084 1959 1552 222 34 8 chr11 139816857 139817213 -10966340 - MLT1A1 LTR MaLR 0 365 1 249 246 34 111 chr11 139817381 139817551 -10966002 - MIR SINE MIR -28 180 21 213 298 22 29 chr11 139818212 139818322 -10965231 - MIR SINE MIR -95 113 21 195 319 0 42 chr11 139818406 139818428 -10965125 - L2 LINE L2 -66 3206 3185 2044 138 32 16 chr11 139818428 139818797 -10964756 + THE1C LTR MaLR 1 375 0 195 319 0 42 chr11 139818797 139818846 -10964707 - L2 LINE L2 -87 3185 3138 285 216 23 34 chr11 139818850 139818923 -10964630 + MER84 LTR ERVI 1 74 -433 2885 143 33 0 chr11 139818923 139819413 -10964140 + MER84 LTR ERV1 2 507 0 285 216 23 34 chr11 139819413 139819427 -10964126 + MER84 LTR ERVI 74 87 -420 2134 137 0 0 chr11 139819472 139819765 -10963788 + AluSx SINE Alu 1 293 -19 413 264 110 13 chr11 139821673 139821828 -10961725 - MIR SINE MIR -19 243 74 389 205 116 0 chr11 139824358 139824470 -10959083 + MER53 DNA DNA 3 127 -62 277 304 25 0 chr11 139829013 139829092 -10954461 + MER94 DNA DNA 1 81 -53 291 93 0 0 chr11 139830509 139830552 -10953001 + (GGA)n Simple_repeat Simple_repeat 3 45 0 1723 192 37 6 chr11 139831370 139831724 -10951829 - MLT1A1 LTR MaLR 0 365 1 1579 223 39 5 chr11 139831742 139832123 -10951430 - MLT1A1-int LTR MaLR -27 1708 1315 283 349 6 18 chr11 139835357 139835526 -10948027 + CT-rich Low_complexity Low_complexity 4 170 0 360 343 36 12 chr11 139836514 139836680 -10946873 - MIR3 SINE MIR -34 174 5 181 197 155 56 chr11 139836765 139836836 -10946717 - L2 LINE L2 -70 3243 3166 265 221 7 7 chr11 139837239 139837381 -10946172 + (TG)n Simple_repeat Simple_repeat 1 142 0 376 339 86 36 chr11 139837387 139837862 -10945691 - L2 LINE L2 -641 2673 2175 2135 189 71 17 chr11 139838264 139838396 -10945157 - L1MA9 LINE L1 -10 6302 6179 189 0 0 0 chr11 139838396 139838417 -10945136 + (TG)n Simple_repeat Simple_repeat 2 22 0 2135 189 71 17 chr11 139838417 139838775 -10944778 - L1MA9 LINE L1 -133 6179 5780 198 71 0 0 chr11 139838775 139838803 -10944750 + (TG)n Simple_repeat Simple_repeat 2 29 0 2135 189 71 17 chr11 139838803 139838834 -10944719 - L1MA9 LINE L1 -532 5780 5752 * 2462 170 14 19 chr11 139838831 139839386 -10944167 + L1MA9 LINE L1 5203 5759 -553 184 304 0 0 chr11 139840310 139840356 -10943197 + MIR SINE MIR 94 139 -69 * 265 345 14 28 chr11 139840333 139840478 -10943075 - MER5B DNA MER1_type -11 167 25 293 326 20 0 chr11 139840535 139840633 -10942920 - MER5A DNA MER1_type -84 105 6 1324 287 65 38 chr11 139841770 139842296 -10941257 + MLT1G1 LTR MaLR 31 570 -25 2292 125 0 0 chr11 139843305 139843617 -10939936 - AluSx SINE Alu 0 312 1 233 323 48 0 chr11 139844156 139844280 -10939273 + L1ME4a LINE L1 5990 6119 -2 202 321 48 0 chr11 139845819 139845903 -10937650 + MIR SINE MIR 32 119 -143 445 327 38 13 chr11 139847931 139848090 -10935463 + MIR SINE MIR 59 221 -41 269 290 43 0 chr11 139848123 139848192 -10935361 - MIR SINE MIR -74 188 117 185 293 0 17 chr11 139849694 139849752 -10933801 - L2 LINE L2 -1043 2271 2215 186 396 0 10 chr11 139851086 139851182 -10932371 + MIR SINE MIR 112 206 -56 246 271 0 0 chr11 139851265 139851324 -10932229 + L2 LINE L2 3251 3309 -4 26 30 0 0 chr11 139852040 139852073 -10931480 + AT_rich Low_complexity Low_complexity 1 33 0 245 290 11 75 chr11 139852888 139852946 -10930607 + MIR SINE MIR 58 109 -153 503 237 151 27 chr11 139852946 139853132 -10930421 - MER3 DNA MER1_type 0 209 1 245 290 11 75 chr11 139853132 139853166 -10930387 + MIR SINE MIR 109 144 -118 525 270 16 0 chr11 139855172 139855298 -10928255 - Tigger3b DNA MER2_type -1 1231 1104 3203 108 48 24 chr11 139855345 139855545 -10928008 - Tigger3b DNA MER2_type -2286 742 548 2279 114 3 0 chr11 139855545 139855844 -10927709 + AluSx SINE Alu 1 300 -12 3203 108 48 24 chr11 139855844 139856224 -10927329 - Tigger3b DNA MER2_type -2480 548 148 210 351 52 13 chr11 139856248 139856402 -10927151 + L2 LINE L2 3152 3311 -2 196 231 0 19 chr11 139856486 139856538 -10927015 - MIR SINE MIR -134 74 24 183 271 42 0 chr11 139858885 139858933 -10924620 - MER5B DNA MER1_type -128 50 1 882 264 19 41 chr11 139860464 139860778 -10922775 + ERVL LTR ERVL 5120 5426 -338 410 233 29 19 chr11 139860853 139860956 -10922597 - LTR34 LTR ERV1 -6 693 590 661 227 57 68 chr11 139860992 139861256 -10922297 - LTR34 LTR ERV1 -318 381 121 553 179 78 197 chr11 139861265 139861600 -10921953 - MER51A LTR ERV1 -12 622 328 213 303 40 74 chr11 139863528 139863703 -10919850 + L2 LINE L2 3103 3271 -1 343 123 14 14 chr11 139863703 139863776 -10919777 + GA-rich Low_complexity Low_complexity 1 73 0 343 283 42 8 chr11 139864343 139864463 -10919090 + (CATG)n Simple_repeat Simple_repeat 3 126 0 2546 152 19 47 chr11 139865095 139865705 -10917848 + MER4B LTR ERV1 1 778 -1 34 24 0 0 chr11 139865925 139865966 -10917587 + AT_rich Low_complexity Low_complexity 1 41 0 4763 160 40 17 chr11 139866333 139867035 -10916518 + MER4D LTR ERV1 1 729 -174 3465 117 45 4 chr11 139867035 139867567 -10915986 - MER41A LTR ERV1 0 554 1 4763 160 40 17 chr11 139867567 139867747 -10915806 + MER4D LTR ERV1 729 903 0 230 295 26 0 chr11 139867849 139867927 -10915626 + GA-rich Low_complexity Low_complexity 1 80 0 446 293 63 18 chr11 139868447 139868669 -10914884 + MLT1D LTR MaLR 2 233 -272 1292 238 103 33 chr11 139868757 139869211 -10914342 + LTR29 LTR ERV1 133 618 -4 566 218 153 105 chr11 139869224 139869453 -10914100 + MLT1D LTR MaLR 228 505 0 636 266 86 36 chr11 139869652 139869930 -10913623 - LTR19C LTR ERV1 0 779 488 * 1401 219 14 83 chr11 139869910 139870330 -10913223 - LTR9 LTR ERV1 -221 391 1 1125 207 127 43 chr11 139870487 139870947 -10912606 - LTR29 LTR ERV1 -4 618 128 319 272 78 10 chr11 139870962 139871065 -10912488 - MER39 LTR ERV1 -595 112 3 6569 192 57 33 chr11 139871169 139871716 -10911837 - MER39-int LTR ERV1 -164 6167 5635 3275 139 21 50 chr11 139871716 139872334 -10911219 + MER4A LTR ERV1 1 600 0 6569 192 57 33 chr11 139872334 139872661 -10910892 - MER39-int LTR ERV1 -696 5635 5317 2064 129 22 47 chr11 139872661 139873025 -10910528 + THE1A LTR MaLR 1 355 0 6569 192 57 33 chr11 139873025 139873801 -10909752 - MER39-int LTR ERV1 -1014 5317 4414 1850 171 17 0 chr11 139874178 139874476 -10909077 + AluSx SINE Alu 1 303 -9 197 339 122 4 chr11 139874591 139874821 -10908732 + MIR SINE MIR 6 262 0 187 259 37 0 chr11 139876244 139876298 -10907255 - L3b LINE CR1 -124 1459 1404 217 263 111 10 chr11 139876496 139876595 -10906958 + MIR SINE MIR 43 151 -111 268 390 22 0 chr11 139876782 139876964 -10906589 - L2 LINE L2 -1882 1432 1247 196 356 0 0 chr11 139877005 139877078 -10906475 - L2 LINE L2 -2190 1124 1052 1179 125 0 0 chr11 139877125 139877415 -10906138 + (TGGA)n Simple_repeat Simple_repeat 1 290 0 352 320 129 9 chr11 139877434 139877775 -10905778 - L2 LINE L2 -2354 960 579 27 49 0 0 chr11 139878118 139878159 -10905394 + AT_rich Low_complexity Low_complexity 1 41 0 192 316 25 25 chr11 139878516 139878595 -10904958 + L2 LINE L2 3147 3225 -47 2515 161 23 9 chr11 139878687 139879041 -10904512 - L1MB1 LINE L1 -20 6148 5785 5831 179 55 17 chr11 139879041 139880227 -10903326 - Tigger3b DNA MER2_type 0 1231 1 2515 161 23 9 chr11 139880227 139880306 -10903247 - L1MB1 LINE L1 -383 5785 5709 196 239 68 34 chr11 139880308 139880396 -10903157 - MIR SINE MIR -60 202 112 180 0 0 0 chr11 139880756 139880776 -10902777 + (CATA)n Simple_repeat Simple_repeat 2 21 0 764 176 20 70 chr11 139881610 139881809 -10901744 + MER2 DNA MER2_type 18 206 -139 768 182 6 71 chr11 139881823 139881993 -10901560 - FRAM SINE Alu -18 158 1 435 165 63 13 chr11 139882030 139882109 -10901444 + MER2 DNA MER2_type 263 345 0 352 229 70 64 chr11 139882707 139882864 -10900689 - LTR50 LTR ERVL -617 178 21 21 36 0 0 chr11 139883362 139883390 -10900163 + AT_rich Low_complexity Low_complexity 1 28 0 363 276 55 0 chr11 139884463 139884590 -10898963 + L1MC4a LINE L1 5718 5851 -1957 225 273 0 82 chr11 139884573 139884683 -10898870 + L1MC/D LINE L1 5782 5882 -1926 * 2283 67 32 3 chr11 139884692 139884811 -10898742 + AluY SINE Alu 1 115 -196 183 42 0 0 chr11 139884811 139884835 -10898718 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2283 67 32 3 chr11 139884835 139885000 -10898553 + AluY SINE Alu 115 293 -18 731 254 42 73 chr11 139885213 139885595 -10897958 + L1MDb LINE L1 762 1131 -5278 527 270 120 70 chr11 139885701 139885803 -10897750 - L1MC4 LINE L1 -328 7633 7538 2412 71 0 7 chr11 139885803 139886097 -10897456 - AluY SINE Alu -19 292 1 527 270 120 70 chr11 139886097 139886901 -10896652 - L1MC4 LINE L1 -423 7538 6681 224 276 67 38 chr11 139886907 139887012 -10896541 - MIR SINE MIR -71 191 84 354 183 0 0 chr11 139887040 139887100 -10896453 - MER66B LTR ERV1 -47 439 380 12807 87 4 6 chr11 139887107 139889625 -10893928 - L1PA7 LINE L1 -8 6146 3632 9266 99 26 3 chr11 139889625 139890979 -10892574 + L1P LINE L1 2199 3583 -2563 2064 130 0 0 chr11 139890979 139891293 -10892260 - AluSq SINE Alu 0 319 6 1079 231 39 29 chr11 139891318 139891625 -10891928 - MER66A LTR ERV1 -128 350 41 837 110 0 0 chr11 139892315 139892442 -10891111 + (GGAA)n Simple_repeat Simple_repeat 4 130 0 218 204 0 20 chr11 139892451 139892500 -10891053 + GA-rich Low_complexity Low_complexity 1 48 0 241 194 0 30 chr11 139892549 139892616 -10890937 + (TG)n Simple_repeat Simple_repeat 2 66 0 2141 259 60 19 chr11 139893699 139894659 -10888894 + L1MC4 LINE L1 5098 6087 -77 1123 200 44 16 chr11 139894639 139894889 -10888664 + L1MD3 LINE L1 6633 6889 -1106 * 351 188 94 10 chr11 139894878 139894974 -10888579 + L1MD3 LINE L1 7765 7868 -127 * 1708 154 20 19 chr11 139894976 139895320 -10888233 - MER4A LTR ERV1 0 664 262 255 211 0 0 chr11 139895878 139895968 -10887585 + GA-rich Low_complexity Low_complexity 1 90 0 243 216 155 17 chr11 139896116 139896232 -10887321 - L1ME4a LINE L1 -1 6120 5989 657 58 0 0 chr11 139896565 139896651 -10886902 + (CA)n Simple_repeat Simple_repeat 1 86 0 817 168 5 86 chr11 139896910 139897119 -10886434 + MER106A DNA MER1_type 43 234 -2 460 316 29 6 chr11 139897129 139897303 -10886250 - MER5B DNA MER1_type 0 178 1 293 294 22 11 chr11 139897324 139897416 -10886137 + MER5A DNA MER1_type 14 106 -83 1867 229 56 28 chr11 139897712 139898215 -10885338 - LTR53 LTR ERVL -1 518 2 2471 191 35 18 chr11 139898273 139898795 -10884758 - MER41B LTR ERV1 -12 597 111 969 413 47 30 chr11 139899034 139899397 -10884156 - HERVL74 LTR ERVL -2377 3308 2940 1164 261 47 0 chr11 139899397 139899715 -10883838 - LTR53 LTR ERVL -186 333 1 285 130 22 0 chr11 139899746 139899792 -10883761 - MADE1 DNA Mariner -33 47 1 1360 213 25 63 chr11 139900010 139900437 -10883116 - L1MB5 LINE L1 -8 6166 5758 1382 233 17 3 chr11 139900437 139900737 -10882816 - AluJo SINE Alu -8 304 1 25 31 0 0 chr11 139903729 139903761 -10879792 + AT_rich Low_complexity Low_complexity 1 32 0 2459 30 0 34 chr11 139903761 139904057 -10879496 - AluY SINE Alu -25 286 1 325 273 77 35 chr11 139905313 139905456 -10878097 - MIR SINE MIR -79 183 35 397 148 43 25 chr11 139905995 139906157 -10877396 + (TCTA)n Simple_repeat Simple_repeat 2 166 0 215 275 38 12 chr11 139906999 139907079 -10876474 + L3b LINE CR1 1284 1365 -218 198 368 37 40 chr11 139908467 139908790 -10874763 + L2 LINE L2 2615 2936 -378 * 346 311 66 0 chr11 139908780 139908947 -10874606 + MIR SINE MIR 17 194 -68 1757 158 80 0 chr11 139908960 139909271 -10874282 - MER1B DNA MER1_type 0 337 2 521 225 29 22 chr11 139909439 139909577 -10873976 + MIR SINE MIR 114 252 -10 285 256 165 23 chr11 139910321 139910454 -10873099 - MARNA DNA Mariner -167 419 268 201 250 250 12 chr11 139910602 139910686 -10872867 + MIR SINE MIR 48 151 -111 402 341 147 18 chr11 139910890 139911224 -10872329 - L2 LINE L2 -9 3304 2928 1209 133 0 3 chr11 139911244 139911603 -10871950 + (TGGA)n Simple_repeat Simple_repeat 1 359 0 360 179 0 0 chr11 139911626 139911704 -10871849 + (TGGA)n Simple_repeat Simple_repeat 4 81 0 371 169 0 0 chr11 139912338 139912403 -10871150 - AluJb SINE Alu -4 298 234 1076 116 0 0 chr11 139912405 139912552 -10871001 - AluJb SINE Alu -165 147 1 199 276 86 46 chr11 140113674 140113848 -10669705 - L2 LINE L2 -58 3255 3075 2104 145 0 7 chr11 140115512 140115822 -10667731 - AluSx SINE Alu -4 308 1 366 262 58 58 chr11 140116013 140116185 -10667368 - MIR SINE MIR -78 184 13 21 36 0 0 chr11 140117059 140117087 -10666466 + AT_rich Low_complexity Low_complexity 1 28 0 389 282 25 55 chr11 140118197 140118360 -10665193 + MIR SINE MIR 86 243 -19 287 234 85 43 chr11 140120943 140121037 -10662516 - MIR3 SINE MIR -53 155 58 852 172 23 23 chr11 140121167 140121341 -10662212 + L1MB7 LINE L1 5992 6165 -19 374 263 48 66 chr11 140121959 140122187 -10661366 - LTR16C LTR ERVL -31 460 237 301 371 0 0 chr11 140122615 140122720 -10660833 + L2 LINE L2 3149 3253 -19 303 345 62 16 chr11 140122862 140123056 -10660497 - MIR SINE MIR -48 214 12 279 307 0 45 chr11 140123074 140123162 -10660391 - L3 LINE CR1 -102 1475 1392 216 346 12 0 chr11 140123323 140123404 -10660149 + L3 LINE CR1 1487 1568 -9 22 35 0 0 chr11 140125140 140125169 -10658384 + AT_rich Low_complexity Low_complexity 1 29 0 270 95 0 0 chr11 140125743 140125785 -10657768 + (CAT)n Simple_repeat Simple_repeat 1 42 0 369 310 47 38 chr11 140126451 140126877 -10656676 + L1M4 LINE L1 4945 5374 -772 279 313 21 0 chr11 140129337 140129433 -10654120 - MER5A DNA MER1_type -83 106 9 192 387 45 0 chr11 140130400 140130511 -10653042 + L2 LINE L2 3140 3255 -17 185 147 44 29 chr11 140131414 140131482 -10652071 + C-rich Low_complexity Low_complexity 2 70 0 250 150 33 42 chr11 140131678 140131798 -10651755 + CT-rich Low_complexity Low_complexity 2 120 0 * 570 135 24 29 chr11 140131788 140131958 -10651595 + C-rich Low_complexity Low_complexity 3 171 0 25 75 0 0 chr11 140132146 140132199 -10651354 + GC_rich Low_complexity Low_complexity 1 53 0 310 73 18 18 chr11 140132489 140132544 -10651009 + (CA)n Simple_repeat Simple_repeat 1 55 0 332 296 87 0 chr11 140133522 140133637 -10649916 - MIR SINE MIR -110 152 28 187 358 25 0 chr11 140134748 140134829 -10648724 + L2 LINE L2 3109 3191 -81 298 343 0 10 chr11 140135321 140135423 -10648130 - L3b LINE CR1 -211 1372 1272 498 167 8 75 chr11 140135918 140136038 -10647515 - L1MA9 LINE L1 -21 6291 6180 1461 160 30 4 chr11 140136040 140136302 -10647251 - L1MA9 LINE L1 -231 6081 5813 500 276 26 0 chr11 140136397 140136549 -10647004 - MIR3 SINE MIR 0 208 53 1220 171 14 0 chr11 140136668 140136884 -10646669 - L1PA16 LINE L1 -9 6157 5939 444 285 15 15 chr11 140139237 140139374 -10644179 - L2 LINE L2 -4 3309 3173 498 245 127 17 chr11 140139398 140139643 -10643910 + MER31B LTR ERV1 3 355 -111 7724 210 49 31 chr11 140139643 140141323 -10642230 + MLT1A1-int LTR MaLR 25 1735 0 1422 193 40 82 chr11 140141326 140141704 -10641849 + MLT1A1 LTR MaLR 4 365 0 2313 88 7 16 chr11 140141822 140142128 -10641425 + AluSg SINE Alu 1 303 -7 260 91 23 0 chr11 140142206 140142250 -10641303 + (GA)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chr11 140142437 140142458 -10641095 + AT_rich Low_complexity Low_complexity 1 21 0 1297 120 14 5 chr11 140142458 140142667 -10640886 - L1PB1 LINE L1 0 6151 5941 1310 71 0 44 chr11 140142667 140142849 -10640704 - L1PA8 LINE L1 0 6172 5998 21 36 0 0 chr11 140145033 140145061 -10638492 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr11 140145131 140145155 -10638398 + (T)n Simple_repeat Simple_repeat 1 24 0 7470 223 59 38 chr11 140145509 140145982 -10637571 + L1MC3 LINE L1 1407 1869 -4346 189 74 0 0 chr11 140145982 140146009 -10637544 + (TG)n Simple_repeat Simple_repeat 2 28 0 7470 223 59 38 chr11 140146009 140148059 -10635494 + L1MC3 LINE L1 1869 3912 -2303 2398 88 0 0 chr11 140148059 140148356 -10635197 - AluY SINE Alu -10 301 5 7470 223 59 38 chr11 140148356 140149072 -10634481 + L1MC3 LINE L1 3912 4612 -1603 1657 128 13 3 chr11 140149073 140149101 -10634452 - L1P4 LINE L1 -649 5516 5490 2196 94 6 73 chr11 140149101 140149429 -10634124 - AluY SINE Alu -5 306 1 1657 128 13 3 chr11 140149429 140149771 -10633782 - L1P4 LINE L1 -675 5490 5142 2386 168 10 2 chr11 140149771 140150183 -10633370 + L1PA15 LINE L1 5747 6165 0 2733 221 16 44 chr11 140150188 140150756 -10632797 + L1MC3 LINE L1 4602 5142 -1073 2344 104 3 0 chr11 140150756 140151065 -10632488 - AluSg SINE Alu 0 310 1 2733 221 16 44 chr11 140151065 140151310 -10632243 + L1MC3 LINE L1 5142 5392 -823 4683 155 45 30 chr11 140151320 140152212 -10631341 + L1MC3 LINE L1 5468 7821 -33 2243 100 3 10 chr11 140152309 140152620 -10630933 + AluY SINE Alu 1 309 -2 185 343 112 0 chr11 140155387 140155530 -10628023 - L2 LINE L2 -740 2574 2416 2313 106 3 3 chr11 140155542 140155853 -10627700 + AluSx SINE Alu 1 311 -1 243 61 0 0 chr11 140158425 140158458 -10625095 + (CA)n Simple_repeat Simple_repeat 2 34 0 1964 163 16 99 chr11 140158999 140159452 -10624101 - LTR12 LTR ERV1 -234 480 66 262 250 0 0 chr11 140159461 140159513 -10624040 - LTR30 LTR ERV1 -670 52 1 694 298 23 5 chr11 140159788 140160003 -10623550 + MER20 DNA MER1_type 1 219 0 592 222 21 39 chr11 140160676 140160895 -10622658 + MIR SINE MIR 10 219 -43 297 109 0 0 chr11 140162134 140162180 -10621373 + (A)n Simple_repeat Simple_repeat 1 46 0 773 273 168 24 chr11 140164086 140164460 -10619093 + L2 LINE L2 2347 2774 -540 323 359 8 8 chr11 140164504 140164635 -10618918 + L2 LINE L2 3182 3312 -1 3675 207 45 87 chr11 140165584 140165840 -10617713 - L1MC4 LINE L1 -2 8040 7775 2135 113 0 0 chr11 140165840 140166124 -10617429 - AluSg1 SINE Alu -25 284 1 3675 207 45 87 chr11 140166124 140167142 -10616411 - L1MC4 LINE L1 -267 7775 6820 203 156 0 0 chr11 140167356 140167388 -10616165 + CT-rich Low_complexity Low_complexity 1 32 0 210 278 0 0 chr11 140170026 140170080 -10613473 + (TA)n Simple_repeat Simple_repeat 2 55 0 201 121 0 0 chr11 140170080 140170113 -10613440 + (CA)n Simple_repeat Simple_repeat 2 34 0 188 228 239 11 chr11 140170175 140170267 -10613286 - L2 LINE L2 -2 3311 3199 409 372 43 0 chr11 140170285 140170519 -10613034 - MIR SINE MIR -1 261 18 1928 150 14 0 chr11 140170790 140171077 -10612476 - AluSx SINE Alu -21 291 1 217 284 53 11 chr11 140172056 140172151 -10611402 + MIR3 SINE MIR 4 102 -106 312 73 109 0 chr11 140175376 140175431 -10608122 - MLT2B1 LTR ERVL 0 520 460 758 135 0 51 chr11 140175431 140175746 -10607807 + (TA)n Simple_repeat Simple_repeat 1 298 0 258 267 11 11 chr11 140175750 140175840 -10607713 + L1MC4 LINE L1 6614 6703 -1339 * 261 217 72 0 chr11 140175824 140175907 -10607646 + L1MC4 LINE L1 6614 6702 -1340 1797 196 169 7 chr11 140175914 140175926 -10607627 - MLT2B1 LTR ERVL -40 480 471 213 39 0 0 chr11 140175926 140175952 -10607601 + (CA)n Simple_repeat Simple_repeat 1 26 0 1797 196 169 7 chr11 140175952 140176352 -10607201 - MLT2B1 LTR ERVL -49 471 1 200 171 0 0 chr11 140176588 140176623 -10606930 - MIR SINE MIR -150 112 78 186 269 11 65 chr11 140177096 140177189 -10606364 + MIR SINE MIR 106 193 -69 1790 168 3 7 chr11 140177206 140177503 -10606050 + AluJb SINE Alu 1 296 -16 288 271 90 15 chr11 140177504 140177637 -10605916 - L2 LINE L2 -2 3311 3169 3172 267 85 30 chr11 140178733 140179477 -10604076 + L1MC/D LINE L1 36 873 -5523 1520 213 6 22 chr11 140179477 140179792 -10603761 + AluJo SINE Alu 1 310 -2 3172 267 85 30 chr11 140179792 140180264 -10603289 + L1MC/D LINE L1 873 1318 -5078 504 213 67 6 chr11 140180264 140180428 -10603125 + L1MC/D LINE L1 4448 4621 -1594 1263 234 19 12 chr11 140180447 140180767 -10602786 + L1MC/D LINE L1 4707 5028 -1187 1633 202 13 34 chr11 140180815 140181159 -10602394 + MLT1A1 LTR MaLR 28 396 0 328 198 0 0 chr11 140181179 140181260 -10602293 + L1MC/D LINE L1 5050 5130 -1085 1686 173 6 3 chr11 140181266 140181578 -10601975 + L1MC/D LINE L1 5457 5769 -2295 2649 219 111 6 chr11 140181670 140182700 -10600853 + L1ME1 LINE L1 4841 5980 -186 247 261 0 15 chr11 140186480 140186545 -10597008 + GA-rich Low_complexity Low_complexity 1 64 0 414 0 0 0 chr11 140186683 140186729 -10596824 + (TG)n Simple_repeat Simple_repeat 2 47 0 1707 169 140 36 chr11 140187816 140188230 -10595323 + MSTB2 LTR MaLR 1 457 0 182 281 35 0 chr11 140188351 140188408 -10595145 + MIR SINE MIR 86 144 -118 752 280 57 0 chr11 140189137 140189348 -10594205 - MIR SINE MIR -8 254 32 2264 92 0 0 chr11 140189757 140190079 -10593474 + AluSx SINE Alu 1 322 0 2206 94 14 11 chr11 140190085 140190395 -10593158 + AluSq SINE Alu 1 311 0 217 0 0 0 chr11 140190371 140190575 -10592978 + (TAA)n Simple_repeat Simple_repeat 1 204 0 585 164 0 0 chr11 140190600 140190759 -10592794 + (CGA)n Simple_repeat Simple_repeat 2 160 0 888 61 0 0 chr11 140190759 140190874 -10592679 + (GGAGAA)n Simple_repeat Simple_repeat 4 118 0 196 298 132 8 chr11 140192305 140192426 -10591127 + L2 LINE L2 3173 3308 -5 298 308 77 0 chr11 140192975 140193118 -10590435 + MLT1J1 LTR MaLR 7 160 -286 377 228 123 57 chr11 140193124 140193335 -10590218 + MLT1J2 LTR MaLR 193 417 -33 2374 98 7 0 chr11 140196072 140196377 -10587176 - AluSq SINE Alu -6 307 1 1074 79 0 21 chr11 140196383 140196523 -10587030 - AluSq/x SINE Alu -174 139 3 211 325 35 9 chr11 140197309 140197423 -10586130 + MIR SINE MIR 132 248 -14 559 298 34 0 chr11 140199997 140200205 -10583348 - MIR SINE MIR -8 254 40 2316 86 0 0 chr11 140200757 140201058 -10582495 + AluSg SINE Alu 1 301 0 21 0 0 0 chr11 140203981 140204002 -10579551 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr11 140204313 140204338 -10579215 + AT_rich Low_complexity Low_complexity 1 25 0 398 320 123 22 chr11 140204984 140205714 -10577839 + L2 LINE L2 1755 2558 -756 2337 75 0 0 chr11 140208181 140208535 -10575018 + AluSc SINE Alu 1 354 0 422 267 107 27 chr11 140209209 140209359 -10574194 - MLT1I LTR MaLR -150 259 98 225 0 0 0 chr11 140211752 140211777 -10571776 + (T)n Simple_repeat Simple_repeat 1 25 0 182 328 45 0 chr11 140214052 140214119 -10569434 + MIR SINE MIR 124 193 -69 * 208 218 55 0 chr11 140214109 140214164 -10569389 + L2 LINE L2 3215 3272 0 809 304 20 4 chr11 140216005 140216258 -10567295 - MIR SINE MIR 0 262 6 223 122 41 0 chr11 140216999 140217048 -10566505 + (TTA)n Simple_repeat Simple_repeat 2 52 0 2239 114 3 3 chr11 140218612 140218918 -10564635 + AluSx SINE Alu 1 306 -6 603 305 0 0 chr11 140218929 140219083 -10564470 - MIR SINE MIR -106 156 3 21 36 0 0 chr11 140219602 140219630 -10563923 + AT_rich Low_complexity Low_complexity 1 28 0 214 205 0 0 chr11 140219886 140219925 -10563628 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 2275 75 0 33 chr11 140219962 140220269 -10563284 + AluY SINE Alu 3 299 -12 293 229 14 17 chr11 140220355 140220501 -10563052 + MER53 DNA DNA 7 189 0 602 323 58 56 chr11 140221919 140222350 -10561203 - L2 LINE L2 0 3272 2841 336 344 52 13 chr11 140222425 140222579 -10560974 - L2 LINE L2 -922 2392 2233 244 370 9 0 chr11 140222577 140222685 -10560868 - MIR SINE MIR -3 259 151 * 229 250 272 0 chr11 140224275 140224411 -10559142 + L1ME LINE L1 5712 5884 -237 1276 193 4 13 chr11 140224606 140224839 -10558714 + AluJo SINE Alu 22 252 -60 280 270 98 43 chr11 140225737 140225900 -10557653 + MER5B DNA MER1_type 7 178 0 253 248 8 111 chr11 140225944 140226061 -10557492 + L3 LINE CR1 1331 1435 -142 2344 89 118 79 chr11 140226170 140226576 -10556977 + MSTA LTR MaLR 3 424 -4 223 302 240 0 chr11 140227000 140227096 -10556457 + L3 LINE CR1 1454 1572 -5 213 94 0 0 chr11 140228205 140228237 -10555316 + (TA)n Simple_repeat Simple_repeat 2 33 0 29 0 0 0 chr11 140228987 140229016 -10554537 + AT_rich Low_complexity Low_complexity 1 29 0 1280 181 108 122 chr11 140230641 140231235 -10552318 + L1MD1 LINE L1 5656 6242 0 187 354 37 37 chr11 140233938 140234020 -10549533 - L2 LINE L2 0 3272 3191 506 303 27 32 chr11 140235835 140236020 -10547533 + MARNA DNA Mariner 241 424 -162 479 282 87 76 chr11 140236397 140236980 -10546573 - L2 LINE L2 0 3313 2576 304 395 24 0 chr11 140237636 140237760 -10545793 - MIR3 SINE MIR -81 127 1 247 261 35 118 chr11 140238678 140238965 -10544588 + L2 LINE L2 2276 2538 -776 188 200 20 0 chr11 140240169 140240219 -10543334 + CT-rich Low_complexity Low_complexity 1 51 0 3732 218 30 20 chr11 140240219 140241117 -10542436 - L1MB8 LINE L1 0 6178 5272 363 23 0 0 chr11 140241258 140241302 -10542251 + (TG)n Simple_repeat Simple_repeat 1 44 0 1705 129 94 0 chr11 140241302 140241558 -10541995 - AluSq SINE Alu -33 280 1 315 250 15 91 chr11 140242380 140242512 -10541041 + MIR SINE MIR 66 187 -75 240 86 0 0 chr11 140242620 140242655 -10540898 + (TTTTC)n Simple_repeat Simple_repeat 1 35 0 23 33 0 0 chr11 140243447 140243477 -10540076 + AT_rich Low_complexity Low_complexity 1 30 0 188 0 0 69 chr11 140243937 140243966 -10539587 + (TTCCC)n Simple_repeat Simple_repeat 1 27 0 2289 102 3 3 chr11 140243970 140244274 -10539279 - AluSp SINE Alu -9 304 1 249 339 138 0 chr11 140244511 140244729 -10538824 + L2 LINE L2 2808 3055 -217 441 271 23 16 chr11 140245496 140245625 -10537928 + L2 LINE L2 3182 3311 -2 196 257 60 138 chr11 140248005 140248223 -10535330 + L3 LINE CR1 868 1068 -509 232 389 56 16 chr11 140248295 140248670 -10534883 + L3 LINE CR1 1184 1573 -4 21 71 0 0 chr11 140249124 140249166 -10534387 + AT_rich Low_complexity Low_complexity 1 42 0 268 355 50 8 chr11 140249577 140249698 -10533855 + L2 LINE L2 3147 3272 0 3642 161 9 0 chr11 140250496 140251063 -10532490 + L1PA15 LINE L1 5594 6165 0 569 289 93 48 chr11 140251658 140251970 -10531583 - L2 LINE L2 0 3313 2988 257 345 27 0 chr11 140252072 140252182 -10531371 + MIR3 SINE MIR 66 178 -30 334 276 32 96 chr11 140252803 140252959 -10530594 - MIR SINE MIR -98 164 19 275 246 64 36 chr11 140252929 140253039 -10530514 + MIR SINE MIR 48 160 -102 * 2516 74 0 3 chr11 140253540 140253852 -10529701 + AluY SINE Alu 1 311 0 522 91 0 0 chr11 140254614 140254691 -10528862 + (TA)n Simple_repeat Simple_repeat 1 77 0 3279 220 70 10 chr11 140254691 140255482 -10528071 + MER21B LTR ERV1 25 862 -1 286 353 99 20 chr11 140255663 140255864 -10527689 + MIR SINE MIR 46 262 0 259 347 8 25 chr11 140255863 140255984 -10527569 + MIR SINE MIR 132 250 -12 * 342 327 67 7 chr11 140256095 140256245 -10527308 + MIR3 SINE MIR 50 208 0 2349 53 12 53 chr11 140256769 140257090 -10526463 + AluY SINE Alu 1 308 -3 340 239 44 113 chr11 140257244 140257403 -10526150 + MIR3 SINE MIR 47 194 -14 358 327 101 66 chr11 140257595 140258002 -10525551 + L2 LINE L2 2819 3239 -33 420 386 13 7 chr11 140258920 140259073 -10524480 + L2 LINE L2 3117 3270 -2 283 326 76 28 chr11 140259332 140259476 -10524077 + L2 LINE L2 3122 3272 0 704 272 104 49 chr11 140262029 140262508 -10521045 + L2 LINE L2 2780 3270 -43 184 231 46 46 chr11 140262817 140262882 -10520671 + MIR SINE MIR 71 135 -73 184 179 0 26 chr11 140262854 140262893 -10520660 + MIR SINE MIR 107 144 -118 216 130 0 0 chr11 140264954 140265000 -10518553 + (GA)n Simple_repeat Simple_repeat 2 47 0 353 324 231 0 chr11 140265847 140266029 -10517524 - L3 LINE CR1 -15 1562 1339 392 344 66 33 chr11 140266313 140266525 -10517028 - MIR SINE MIR -43 219 1 281 310 7 26 chr11 140266537 140266692 -10516861 + (TATATG)n Simple_repeat Simple_repeat 2 153 0 * 360 273 16 0 chr11 140266591 140266719 -10516834 + (TA)n Simple_repeat Simple_repeat 2 131 0 1463 186 29 16 chr11 140267534 140267841 -10515712 + AluJo SINE Alu 1 311 -1 231 356 0 0 chr11 140268346 140268436 -10515117 + MER117 DNA MER1_type 89 178 -19 856 205 11 21 chr11 140269071 140269261 -10514292 + MER3 DNA MER1_type 8 195 -14 681 269 16 21 chr11 140269265 140269451 -10514102 - MER5A DNA MER1_type 0 189 5 876 225 28 41 chr11 140269481 140269699 -10513854 + MER20 DNA MER1_type 1 215 -4 315 260 110 32 chr11 140271108 140271281 -10512272 + MIR SINE MIR 48 234 -28 294 314 18 53 chr11 140272032 140272201 -10511352 - L2 LINE L2 -660 2654 2492 263 28 28 0 chr11 140273470 140273506 -10510047 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 453 345 49 25 chr11 140275124 140275327 -10508226 + MIR SINE MIR 44 251 -11 240 252 50 92 chr11 140275357 140275476 -10508077 - MIR3 SINE MIR -22 186 73 811 271 39 18 chr11 140275632 140275861 -10507692 - MIR SINE MIR -1 261 28 280 281 35 138 chr11 140278008 140278211 -10505342 - MIR SINE MIR -70 192 11 717 168 122 0 chr11 140279098 140279229 -10504324 + Tigger7 DNA MER2_type 258 404 -329 467 156 83 0 chr11 140279339 140279435 -10504118 + Tigger7 DNA MER2_type 410 513 -1974 * 515 204 0 62 chr11 140279418 140279531 -10504022 + Tigger7 DNA MER2_type 2382 2487 0 180 240 20 20 chr11 140279895 140279945 -10503608 + L2 LINE L2 3263 3312 -1 431 251 256 0 chr11 140281398 140281597 -10501956 + MIR SINE MIR 13 262 0 796 251 53 84 chr11 140283023 140283382 -10500171 + MER34 LTR ERV1 4 351 -191 739 226 25 62 chr11 140283355 140283629 -10499924 + MER34 LTR ERV1 279 542 0 * 180 94 57 19 chr11 140283986 140284039 -10499514 + A-rich Low_complexity Low_complexity 2 56 0 628 256 37 21 chr11 140284352 140284543 -10499010 - L3b LINE CR1 -255 1328 1135 243 306 0 24 chr11 140285174 140285259 -10498294 + GA-rich Low_complexity Low_complexity 2 84 0 202 167 0 0 chr11 140285621 140285657 -10497896 + MIR3 SINE MIR 125 160 -48 2775 199 24 4 chr11 140285693 140286226 -10497327 - MER44D DNA MER2_type -6 599 1 4857 59 3 0 chr11 140286242 140286831 -10496722 + LTR10C LTR ERV1 1 591 0 488 349 44 8 chr11 140287681 140287933 -10495620 - MIR SINE MIR -1 261 1 960 219 42 69 chr11 140288002 140288335 -10495218 + MER33 DNA MER1_type 1 324 0 198 0 0 0 chr11 140289976 140289998 -10493555 + (A)n Simple_repeat Simple_repeat 1 22 0 196 296 0 0 chr11 140290898 140290952 -10492601 + L2 LINE L2 3028 3081 -191 182 115 0 0 chr11 140291146 140291172 -10492381 - MIR SINE MIR -174 88 63 238 343 27 0 chr11 140291383 140291456 -10492097 - L3 LINE CR1 -6 1571 1497 190 284 68 11 chr11 140291628 140291716 -10491837 + L2 LINE L2 2969 3061 -211 234 278 0 126 chr11 140292004 140292120 -10491433 - MIR3 SINE MIR -72 136 42 1469 200 35 60 chr11 140292120 140292520 -10491033 - MLT1B LTR MaLR 0 390 1 234 278 0 126 chr11 140292520 140292554 -10490999 - MIR3 SINE MIR -166 42 5 556 267 28 64 chr11 140293486 140293861 -10489692 - LTR16C LTR ERVL 0 491 69 597 323 31 35 chr11 140293893 140294153 -10489400 + MIR SINE MIR 2 260 -2 2027 145 117 28 chr11 140294271 140294663 -10488890 + MSTA LTR MaLR 2 428 0 3401 55 26 11 chr11 140295450 140295902 -10487651 + L1PA8 LINE L1 5714 6172 0 232 320 89 94 chr11 140295967 140296383 -10487170 - L2 LINE L2 -8 3264 2851 285 365 83 7 chr11 140297079 140297224 -10486329 - L2 LINE L2 0 3272 3117 1808 132 7 24 chr11 140297273 140297670 -10485883 - AluSx SINE Alu 0 392 1 219 323 105 23 chr11 140298120 140298253 -10485300 - L2 LINE L2 -1813 1501 1358 188 331 93 35 chr11 140298504 140298676 -10484877 - L2 LINE L2 -2392 922 741 2240 153 41 19 chr11 140298858 140299277 -10484276 - MSTB1 LTR MaLR -4 428 1 322 280 0 32 chr11 140299924 140300017 -10483536 + L1ME3A LINE L1 6075 6164 -6 360 123 31 0 chr11 140300069 140300134 -10483419 + HAL1 LINE L1 1580 1646 -861 993 117 6 11 chr11 140300157 140300337 -10483216 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 22 0 0 0 chr11 140301874 140301896 -10481657 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr11 140301956 140301979 -10481574 + (CATA)n Simple_repeat Simple_repeat 2 24 0 2196 108 0 0 chr11 140302627 140302932 -10480621 + AluSg SINE Alu 1 305 -5 1928 139 4 0 chr11 140303069 140303370 -10480183 - AluSx SINE Alu 0 302 1 608 69 0 52 chr11 140303575 140303691 -10479862 + (TTCCC)n Simple_repeat Simple_repeat 3 112 0 254 350 51 13 chr11 140303877 140304034 -10479519 - L2 LINE L2 -213 3100 2938 239 196 181 51 chr11 140305366 140305504 -10478049 + L1M3 LINE L1 5275 5430 -904 465 258 121 74 chr11 140305571 140305950 -10477603 - L1ME4a LINE L1 -160 5961 5581 726 232 81 11 chr11 140305962 140306147 -10477406 + MIR SINE MIR 8 205 -57 359 234 28 65 chr11 140306710 140306817 -10476736 + MER63 DNA MER1_type 647 749 -311 260 260 13 13 chr11 140306822 140306899 -10476654 + MER63 DNA MER1_type 986 1062 0 210 204 114 0 chr11 140307373 140307417 -10476136 - MIR SINE MIR -141 67 19 246 196 18 36 chr11 140307521 140307577 -10475976 - L2 LINE L2 0 3313 3259 251 345 0 0 chr11 140308878 140308962 -10474591 - MIR SINE MIR -59 149 66 511 274 33 74 chr11 140309007 140309222 -10474331 - MIR SINE MIR -45 217 12 813 285 180 17 chr11 140309585 140310331 -10473222 - L2 LINE L2 0 3313 2445 188 32 97 0 chr11 140310433 140310464 -10473089 + (TTAAA)n Simple_repeat Simple_repeat 3 36 0 220 276 92 40 chr11 140311394 140311470 -10472083 + L2 LINE L2 3229 3308 -5 729 164 7 27 chr11 140311836 140311982 -10471571 - L1MA8 LINE L1 -6 6285 6143 312 322 49 21 chr11 140311983 140312126 -10471427 + MIR SINE MIR 116 262 0 213 261 149 30 chr11 140312257 140312391 -10471162 - MIR SINE MIR -111 151 2 397 336 17 47 chr11 140312793 140313006 -10470547 + MIR SINE MIR 6 207 -55 1693 163 51 70 chr11 140313023 140313378 -10470175 + MER7A DNA MER2_type 1 346 0 389 352 57 52 chr11 140315983 140316406 -10467147 + L2 LINE L2 2842 3266 -6 202 274 32 16 chr11 140316414 140316476 -10467077 - L2 LINE L2 -86 3227 3165 343 304 20 10 chr11 140316897 140316999 -10466554 + MIR SINE MIR 20 122 -140 604 302 26 5 chr11 140317097 140317286 -10466267 + MIR SINE MIR 59 251 -11 2918 88 6 0 chr11 140317395 140317757 -10465796 + THE1B LTR MaLR 1 364 0 180 0 0 0 chr11 140319048 140319068 -10464485 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 320 259 12 0 chr11 140320145 140320226 -10463327 + MIR3 SINE MIR 125 206 -2 508 304 91 35 chr11 140320813 140321043 -10462510 + MIR SINE MIR 7 249 -13 369 301 68 8 chr11 140321285 140321418 -10462135 - MIR SINE MIR -12 250 110 240 375 54 0 chr11 140321589 140321701 -10461852 - L2 LINE L2 -4 3268 3151 279 256 12 0 chr11 140323742 140323828 -10459725 + (TA)n Simple_repeat Simple_repeat 1 87 0 1265 269 51 35 chr11 140323943 140324396 -10459157 + MLT1C LTR MaLR 1 460 -7 342 286 44 22 chr11 140325451 140325542 -10458011 + L2 LINE L2 3168 3260 -12 241 214 103 103 chr11 140326396 140326522 -10457031 + L2 LINE L2 1917 2042 -1272 282 219 0 0 chr11 140327439 140327503 -10456050 + (TATATG)n Simple_repeat Simple_repeat 4 67 0 201 125 50 0 chr11 140327529 140327569 -10455984 + (TA)n Simple_repeat Simple_repeat 1 42 0 483 256 31 31 chr11 140327597 140327771 -10455782 - MIR SINE MIR -62 146 6 492 285 17 39 chr11 140328585 140328764 -10454789 - MIR SINE MIR -75 187 13 23 0 0 0 chr11 140329587 140329610 -10453943 + AT_rich Low_complexity Low_complexity 1 23 0 197 333 121 30 chr11 140329787 140329886 -10453667 - L2 LINE L2 -12 3260 3153 2343 152 101 3 chr11 140330945 140331333 -10452220 + MSTB LTR MaLR 1 426 0 6482 214 45 50 chr11 140331338 140332923 -10450630 + MSTB-int LTR MaLR 5 1580 0 814 226 0 0 chr11 140332923 140333069 -10450484 + MSTB LTR MaLR 1 146 -280 290 290 80 26 chr11 140333393 140333571 -10449982 + L1 LINE L1 3605 3789 -2357 312 365 33 35 chr11 140334057 140334509 -10449044 + L1 LINE L1 4406 4856 -1290 3019 288 90 20 chr11 140334509 140335804 -10447749 - L2 LINE L2 -189 3124 1735 21 0 0 0 chr11 140335905 140335926 -10447627 + AT_rich Low_complexity Low_complexity 1 21 0 223 246 203 8 chr11 140336544 140336662 -10446891 + MIR SINE MIR 119 259 -3 2245 105 3 0 chr11 140336915 140337221 -10446332 - AluSp SINE Alu -6 307 1 534 179 18 0 chr11 140337346 140337514 -10446039 + (CA)n Simple_repeat Simple_repeat 2 172 0 415 201 13 0 chr11 140337537 140337696 -10445857 + (CA)n Simple_repeat Simple_repeat 1 161 0 248 257 30 30 chr11 140338360 140338461 -10445092 - L1MC4 LINE L1 -1333 6709 6609 288 201 45 22 chr11 140339000 140339134 -10444419 + (TA)n Simple_repeat Simple_repeat 2 138 0 271 320 0 0 chr11 140341039 140341114 -10442439 - L2 LINE L2 -1 3312 3238 347 281 13 59 chr11 140341381 140341534 -10442019 + MER5B DNA MER1_type 27 172 -6 22 0 0 0 chr11 140343267 140343289 -10440264 + AT_rich Low_complexity Low_complexity 1 22 0 420 322 52 34 chr11 140343372 140343605 -10439948 - MIR SINE MIR -1 261 25 2141 114 34 0 chr11 140344885 140345183 -10438370 - AluSx SINE Alu -4 308 1 1992 191 16 12 chr11 140345277 140345732 -10437821 - MER31A LTR ERV1 -1 465 4 447 228 90 21 chr11 140345879 140346024 -10437529 + MIR SINE MIR 94 248 -14 280 299 36 22 chr11 140346549 140346686 -10436867 + MER104 DNA Tc2 1 139 -41 2080 133 3 0 chr11 140346727 140347021 -10436532 - AluSx SINE Alu -17 295 1 2100 72 61 4 chr11 140347302 140347580 -10435973 - L1PA8 LINE L1 -9 6163 5870 348 315 93 27 chr11 140347665 140348051 -10435502 + L2 LINE L2 2820 3305 -8 2021 155 3 0 chr11 140348123 140348420 -10435133 - AluSq SINE Alu -15 298 1 204 125 0 0 chr11 140349350 140349382 -10434171 + (T)n Simple_repeat Simple_repeat 1 32 0 243 0 0 0 chr11 140349675 140349702 -10433851 + (T)n Simple_repeat Simple_repeat 1 27 0 29 28 0 0 chr11 140349708 140349744 -10433809 + GC_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr11 140349895 140349918 -10433635 + (A)n Simple_repeat Simple_repeat 1 23 0 244 111 0 0 chr11 140351444 140351480 -10432073 + MIR SINE MIR 47 82 -180 351 0 0 0 chr11 140354197 140354236 -10429317 + (CA)n Simple_repeat Simple_repeat 2 40 0 369 109 0 0 chr11 140355083 140355138 -10428415 + (T)n Simple_repeat Simple_repeat 1 55 0 24 0 0 0 chr11 140355161 140355185 -10428368 + GC_rich Low_complexity Low_complexity 1 24 0 2483 93 0 0 chr11 140355289 140355628 -10427925 - AluSq SINE Alu 0 339 1 271 208 0 0 chr11 140356039 140356087 -10427466 + LTR37A LTR ERV1 18 65 -361 483 131 81 30 chr11 140356097 140356196 -10427357 - MER41B LTR ERV1 -88 547 444 * 1544 202 28 11 chr11 140356186 140356548 -10427005 + LTR37A LTR ERV1 59 426 0 312 291 0 0 chr11 140358462 140358603 -10424950 + CT-rich Low_complexity Low_complexity 3 143 0 215 351 9 0 chr11 140358748 140358862 -10424691 + GA-rich Low_complexity Low_complexity 2 116 0 210 313 0 0 chr11 140358899 140358979 -10424574 + MIR SINE MIR 183 262 0 229 289 48 48 chr11 140360481 140360564 -10422989 - L2 LINE L2 -49 3223 3141 1469 234 96 40 chr11 140361103 140361581 -10421972 + MLT1D LTR MaLR 1 505 0 362 253 33 0 chr11 140361613 140361704 -10421849 - MER94 DNA DNA -40 94 1 2077 122 67 25 chr11 140362647 140363007 -10420546 + THE1C LTR MaLR 1 375 0 235 347 0 0 chr11 140364918 140364993 -10418560 - MIR SINE MIR -80 182 108 216 359 58 0 chr11 140365648 140365751 -10417802 + MIR SINE MIR 153 261 -1 232 333 100 25 chr11 140367305 140367425 -10416128 - L3b LINE CR1 -209 1374 1246 221 395 48 30 chr11 140367734 140367901 -10415652 - MIR3 SINE MIR -23 185 16 308 388 39 11 chr11 140368515 140368693 -10414860 - L2 LINE L2 -483 2831 2649 3965 219 59 83 chr11 140368771 140370222 -10413331 + L1MC4a LINE L1 6339 7755 -53 584 301 34 19 chr11 140370364 140370630 -10412923 - L2 LINE L2 -909 2405 2136 274 280 93 19 chr11 140373316 140373423 -10410130 + MIR SINE MIR 98 212 -50 537 286 41 36 chr11 140373566 140373762 -10409791 + L2 LINE L2 3117 3313 0 1969 229 51 22 chr11 140373897 140374386 -10409167 + MLT1D LTR MaLR 3 505 0 2286 59 0 14 chr11 140374452 140374741 -10408812 + AluYa5 SINE Alu 1 285 -26 261 157 11 22 chr11 140375235 140375324 -10408229 + (TG)n Simple_repeat Simple_repeat 1 88 0 1053 213 57 16 chr11 140375860 140376104 -10407449 + L1MC3 LINE L1 6458 6711 -1074 1549 160 23 0 chr11 140376113 140376375 -10407178 + L1MC3 LINE L1 6996 7263 -522 1363 111 6 0 chr11 140376375 140376555 -10406998 + AluSp SINE Alu 111 291 -22 379 304 138 34 chr11 140376578 140376899 -10406654 - L2 LINE L2 -12 3260 2910 1628 154 3 56 chr11 140377418 140377742 -10405811 - AluJo SINE Alu -3 309 3 677 188 8 0 chr11 140378075 140378227 -10405326 - FLAM_C SINE Alu 0 153 1 490 179 0 0 chr11 140378530 140378614 -10404939 - MLT1F1 LTR MaLR -465 102 19 824 148 0 8 chr11 140378876 140379004 -10404549 + FLAM_C SINE Alu 6 132 -11 181 241 127 51 chr11 140379167 140379246 -10404307 - L2 LINE L2 -33 3280 3196 248 157 229 29 chr11 140379287 140379357 -10404196 - MLT1E LTR MaLR -509 84 1 227 346 166 23 chr11 140379357 140379574 -10403979 + L3 LINE CR1 533 780 -797 6809 189 65 15 chr11 140380938 140382271 -10401282 + MSTB-int LTR MaLR 253 1651 0 2112 196 16 54 chr11 140382271 140382714 -10400839 + MSTB LTR MaLR 1 426 0 392 296 91 35 chr11 140383785 140383984 -10399569 + MIR SINE MIR 1 210 -52 2403 50 27 0 chr11 140385278 140385404 -10398149 + AluY SINE Alu 2 123 -188 197 0 71 0 chr11 140385404 140385432 -10398121 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2403 50 27 0 chr11 140385432 140385602 -10397951 + AluY SINE Alu 123 306 -5 226 298 10 19 chr11 140385768 140385872 -10397681 + AluSg/x SINE Alu 200 302 0 368 206 47 0 chr11 140386521 140386628 -10396925 - Charlie5 DNA MER1_type -56 2556 2445 825 161 0 0 chr11 140386650 140386780 -10396773 - FLAM_C SINE Alu 0 143 14 514 209 5 171 chr11 140387961 140388172 -10395381 + MER5B DNA MER1_type 3 178 0 2802 19 0 0 chr11 140388695 140389006 -10394547 + AluYa5 SINE Alu 1 311 0 207 0 0 0 chr11 140389256 140389279 -10394274 + (A)n Simple_repeat Simple_repeat 1 23 0 758 306 97 31 chr11 140391157 140391611 -10391942 - LTR33 LTR ERVL -6 515 32 2148 40 0 4 chr11 140392376 140392656 -10390897 + L1PA2 LINE L1 5909 6155 0 188 292 177 0 chr11 140394199 140394259 -10389294 - MER5A DNA MER1_type 0 189 141 2327 75 0 3 chr11 140394259 140394554 -10388999 + AluY SINE Alu 1 294 -17 188 292 177 0 chr11 140394554 140394589 -10388964 - MER5A DNA MER1_type -48 141 77 1617 276 114 18 chr11 140394716 140395285 -10388268 + MLT1E2 LTR MaLR 3 626 0 212 352 23 62 chr11 140395329 140395457 -10388096 + L2 LINE L2 2630 2752 -562 236 330 122 48 chr11 140395518 140395812 -10387741 + L2 LINE L2 2951 3266 -6 1817 211 129 67 chr11 140395832 140396415 -10387138 + MER21B LTR ERV1 11 629 -234 458 276 24 16 chr11 140396467 140396594 -10386959 - MIR SINE MIR -79 183 56 270 0 0 0 chr11 140396595 140396625 -10386928 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1999 56 0 0 chr11 140396625 140396858 -10386695 - L1PA4 LINE L1 -10 6145 5913 3119 168 46 82 chr11 140397643 140398363 -10385190 + LTR8A LTR ERV1 34 727 0 3933 199 63 32 chr11 140398478 140399379 -10384174 - MER63C DNA MER1_type -1 929 1 782 195 30 18 chr11 140400917 140401081 -10382472 + MLT1G LTR MaLR 416 581 -9 1120 68 0 14 chr11 140401097 140401244 -10382309 - L1PA7 LINE L1 0 6154 6010 852 181 60 0 chr11 140401459 140401608 -10381945 - FRAM SINE Alu -8 158 1 26 74 0 0 chr11 140401699 140401753 -10381800 + AT_rich Low_complexity Low_complexity 1 54 0 292 290 43 32 chr11 140401802 140401895 -10381658 - MIR SINE MIR -62 146 53 2363 184 47 2 chr11 140402628 140403036 -10380517 + MSTB LTR MaLR 1 426 0 234 243 57 0 chr11 140403338 140403408 -10380145 - L1ME4a LINE L1 -74 6047 5974 534 291 88 31 chr11 140403415 140403734 -10379819 - L1ME4a LINE L1 -210 5911 5575 1099 220 104 75 chr11 140403846 140404330 -10379223 + MER110A LTR ERV1 1 476 -8 186 294 152 0 chr11 140404370 140404462 -10379091 - MIR SINE MIR -9 253 148 244 156 0 22 chr11 140406402 140406447 -10377106 - L1ME LINE L1 -201 5920 5877 1499 171 62 0 chr11 140406562 140406819 -10376734 + L1PA15 LINE L1 5893 6165 0 910 143 23 0 chr11 140406985 140407118 -10376435 - AluJo SINE Alu -54 258 123 319 226 237 34 chr11 140407118 140407295 -10376258 - L1MEd LINE L1 -4863 1256 1044 379 331 81 0 chr11 140407302 140407426 -10376127 + MER119 DNA MER1_type 1 134 -449 * 599 194 7 69 chr11 140407418 140407562 -10375991 + MER119 DNA MER1_type 448 582 -1 339 273 38 8 chr11 140407581 140407713 -10375840 - L1MEd LINE L1 -5088 1031 896 1045 0 0 0 chr11 140407725 140407838 -10375715 + AluYa5/8 SINE Alu 187 299 -11 548 304 137 55 chr11 140407912 140408676 -10374877 - L1MEd LINE L1 -5282 837 11 511 230 88 25 chr11 140410791 140410966 -10372587 + MIR SINE MIR 20 206 -56 491 172 40 20 chr11 140411088 140411187 -10372366 - U13 snRNA snRNA 0 104 4 249 359 0 0 chr11 140411773 140411890 -10371663 + C-rich Low_complexity Low_complexity 4 120 0 293 277 30 0 chr11 140412008 140412109 -10371444 + HAL1 LINE L1 1572 1675 -832 203 103 26 0 chr11 140412531 140412570 -10370983 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2482 247 43 19 chr11 140412781 140413428 -10370125 + MER21B LTR ERV1 78 740 -123 2516 68 0 0 chr11 140413606 140413917 -10369636 - AluY SINE Alu 0 311 1 458 308 21 36 chr11 140413968 140414247 -10369306 + L1ME LINE L1 3729 4003 -2143 2340 105 0 13 chr11 140414263 140414576 -10368977 + AluSp SINE Alu 1 309 -4 1797 160 10 10 chr11 140414595 140414902 -10368651 + AluSq SINE Alu 1 307 -6 22 0 0 0 chr11 140414911 140414933 -10368620 + AT_rich Low_complexity Low_complexity 1 22 0 243 61 0 0 chr11 140414934 140414967 -10368586 + (TG)n Simple_repeat Simple_repeat 2 34 0 197 32 0 32 chr11 140414967 140414998 -10368555 + (TA)n Simple_repeat Simple_repeat 2 31 0 329 310 43 71 chr11 140415041 140415322 -10368231 + L1ME LINE L1 4111 4383 -1763 352 272 92 79 chr11 140415356 140415724 -10367829 + L1ME LINE L1 4643 5015 -1131 514 322 83 8 chr11 140416139 140416381 -10367172 - MIR SINE MIR 0 262 3 346 259 76 60 chr11 140416395 140416580 -10366973 + L1ME LINE L1 5445 5632 -489 199 286 48 24 chr11 140616689 140616773 -10166780 - L2 LINE L2 -1 3312 3227 2330 83 0 10 chr11 140616792 140617092 -10166461 - AluSg SINE Alu -13 297 1 281 304 54 18 chr11 140617138 140617250 -10166303 + L2 LINE L2 2635 2750 -564 305 346 95 62 chr11 140617471 140617714 -10165839 + L2 LINE L2 3022 3272 0 382 340 56 12 chr11 140618074 140618236 -10165317 - MIR3 SINE MIR -6 202 34 2163 113 3 0 chr11 140618311 140618622 -10164931 + AluSx SINE Alu 1 312 0 326 263 146 15 chr11 140618624 140618761 -10164792 + HAL1 LINE L1 652 806 -1701 2202 72 4 7 chr11 140618761 140619039 -10164514 - AluY SINE Alu -10 301 25 2009 135 0 23 chr11 140619155 140619459 -10164094 + AluSx SINE Alu 1 297 -15 393 239 77 8 chr11 140619545 140619675 -10163878 + MIR SINE MIR 122 260 -2 267 277 0 0 chr11 140619707 140619772 -10163781 + L2 LINE L2 3192 3256 -16 2387 97 0 28 chr11 140619777 140620098 -10163455 + AluSx SINE Alu 1 312 0 715 109 18 0 chr11 140621113 140621268 -10162285 - AluSg/x SINE Alu 0 353 197 818 121 40 133 chr11 140621486 140621659 -10161894 + AluSg SINE Alu 1 157 -153 314 318 27 27 chr11 140621794 140621942 -10161611 + L2 LINE L2 2898 3045 -227 376 313 76 11 chr11 140622035 140622252 -10161301 + MIR SINE MIR 9 244 -18 2141 129 0 0 chr11 140622260 140622555 -10160998 - AluSq SINE Alu -18 295 1 287 207 110 12 chr11 140622634 140622716 -10160837 - MIR SINE MIR -76 186 97 863 258 62 27 chr11 140622768 140623024 -10160529 + L1MC/D LINE L1 5524 5788 -2020 2323 103 0 0 chr11 140623284 140623584 -10159969 - AluSg SINE Alu -10 300 1 1287 27 0 0 chr11 140624564 140624711 -10158842 - AluY SINE Alu -12 299 153 2374 81 0 0 chr11 140624880 140625175 -10158378 - AluSc SINE Alu -14 295 1 2075 94 63 7 chr11 140625263 140625549 -10158004 - AluSq SINE Alu -11 302 1 2337 79 27 0 chr11 140625790 140626082 -10157471 - AluY SINE Alu -11 300 1 483 155 0 0 chr11 140626110 140626194 -10157359 + (CCA)n Simple_repeat Simple_repeat 1 84 0 201 74 0 0 chr11 140626192 140626219 -10157334 + (CAG)n Simple_repeat Simple_repeat 1 27 0 * 711 281 34 25 chr11 140626226 140626461 -10157092 - MIR SINE MIR -13 249 13 465 138 0 0 chr11 140626509 140626589 -10156964 + (CAGA)n Simple_repeat Simple_repeat 3 82 0 210 143 0 0 chr11 140626655 140626690 -10156863 + (CA)n Simple_repeat Simple_repeat 2 36 0 209 309 66 52 chr11 140626943 140627079 -10156474 + MIR SINE MIR 21 158 -104 2091 111 0 10 chr11 140627289 140627611 -10155942 + AluSx SINE Alu 1 319 0 28 29 0 0 chr11 140627811 140627846 -10155707 + AT_rich Low_complexity Low_complexity 1 35 0 826 271 54 18 chr11 140628140 140628472 -10155081 - L1MC/D LINE L1 -2199 5609 5266 2045 111 0 4 chr11 140629498 140629799 -10153754 + AluSc SINE Alu 1 300 0 432 219 70 0 chr11 140629801 140629915 -10153638 - MIR SINE MIR -80 182 61 2175 125 6 6 chr11 140631115 140631427 -10152126 - AluSx SINE Alu 0 312 1 972 169 13 93 chr11 140631987 140632224 -10151329 + MER20 DNA MER1_type 2 219 0 269 222 211 0 chr11 140632601 140632691 -10150862 - MIR SINE MIR -83 179 71 1789 124 27 0 chr11 140632756 140633038 -10150515 - AluSx SINE Alu 0 306 18 23 33 0 0 chr11 140633172 140633202 -10150351 + AT_rich Low_complexity Low_complexity 1 30 0 463 227 42 25 chr11 140633307 140633426 -10150127 - L2 LINE L2 -1 3312 3192 2243 108 3 0 chr11 140634377 140634673 -10148880 + AluSx SINE Alu 1 297 -15 2564 136 39 2 chr11 140635215 140635626 -10147927 - MSTA LTR MaLR -2 426 1 2269 119 0 0 chr11 140635631 140635934 -10147619 - AluSg SINE Alu -7 303 1 218 290 73 16 chr11 140635938 140636062 -10147491 + L3 LINE CR1 1247 1377 -200 243 146 0 0 chr11 140636161 140636202 -10147351 + (TG)n Simple_repeat Simple_repeat 2 42 0 587 225 27 64 chr11 140636366 140636553 -10147000 - MIR SINE MIR -8 254 75 2207 109 3 3 chr11 140636914 140637217 -10146336 - AluSq SINE Alu -10 303 1 208 191 0 43 chr11 140637932 140637979 -10145574 + GA-rich Low_complexity Low_complexity 2 46 0 2211 94 3 3 chr11 140638645 140638931 -10144622 - AluSx SINE Alu -26 286 1 1744 166 0 7 chr11 140639401 140639720 -10143833 - AluJo SINE Alu 0 317 1 250 152 43 0 chr11 140640640 140640686 -10142867 + L2 LINE L2 3266 3313 0 1494 113 58 73 chr11 140640811 140641138 -10142415 + MER33 DNA MER1_type 3 324 0 488 68 0 27 chr11 140642737 140642811 -10140742 + (TTTTC)n Simple_repeat Simple_repeat 2 73 0 303 214 0 0 chr11 140642826 140642896 -10140657 + CT-rich Low_complexity Low_complexity 3 72 0 871 158 0 0 chr11 140642901 140643034 -10140519 - FLAM_C SINE Alu 0 133 1 241 183 0 17 chr11 140646736 140646796 -10136757 + G-rich Low_complexity Low_complexity 3 61 0 2634 49 0 0 chr11 140647203 140647511 -10136042 + AluSg SINE Alu 1 308 -2 212 335 28 14 chr11 140650556 140650692 -10132861 - MIR3 SINE MIR -67 141 14 198 0 0 0 chr11 140651130 140651152 -10132401 + (TG)n Simple_repeat Simple_repeat 2 23 0 621 301 88 61 chr11 140652281 140652772 -10130781 + L3 LINE CR1 1074 1577 0 336 261 82 37 chr11 140653022 140653156 -10130397 - MIR3 SINE MIR -19 189 50 205 324 200 5 chr11 140653280 140653465 -10130088 + L3 LINE CR1 1330 1550 -27 244 246 66 0 chr11 140653514 140653575 -10129978 - MIR SINE MIR -69 139 75 2458 69 0 28 chr11 140653839 140654159 -10129394 - AluY SINE Alu 0 311 1 2058 139 0 16 chr11 140654231 140654403 -10129150 - AluSx SINE Alu -7 305 139 1578 118 97 76 chr11 140654403 140654692 -10128861 - AluSx SINE Alu -17 295 1 2058 139 0 16 chr11 140654692 140654829 -10128724 - AluSx SINE Alu -173 139 1 2515 280 38 65 chr11 140655181 140656624 -10126929 - L1MEd LINE L1 -4819 1491 42 263 186 51 0 chr11 140658055 140658114 -10125439 - LTR16A LTR ERVL 0 450 389 804 297 101 12 chr11 140658119 140658456 -10125097 - LTR16A LTR ERVL -32 418 52 2225 96 4 0 chr11 140658553 140658874 -10124679 + AluSq SINE Alu 1 322 0 234 355 68 34 chr11 140659046 140659195 -10124358 - L2 LINE L2 -147 3125 2983 2341 99 0 0 chr11 140659195 140659489 -10124064 + AluSg SINE Alu 1 294 -16 234 355 68 34 chr11 140659489 140659784 -10123769 - L2 LINE L2 -289 2983 2660 2270 117 10 0 chr11 140660218 140660525 -10123028 - AluSx SINE Alu -2 310 1 248 294 98 16 chr11 140660908 140661102 -10122451 + MIR SINE MIR 47 256 -6 1382 118 4 18 chr11 140662496 140662724 -10120829 + L1MB8 LINE L1 5953 6177 -1 2334 100 3 0 chr11 140663713 140664014 -10119539 + AluSx SINE Alu 1 302 -10 230 153 17 102 chr11 140664580 140664639 -10118914 - MLT1L LTR MaLR -226 389 336 1033 102 0 0 chr11 140665028 140665165 -10118388 + AluJb SINE Alu 1 137 -175 23 33 0 0 chr11 140665190 140665220 -10118333 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr11 140665507 140665530 -10118023 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2093 116 0 0 chr11 140665537 140665813 -10117740 - AluSx SINE Alu -36 276 1 582 181 0 107 chr11 140666417 140666566 -10116987 + FLAM_A SINE Alu 1 133 0 561 192 80 16 chr11 140667952 140668077 -10115476 - FLAM_C SINE Alu 0 133 1 240 59 0 0 chr11 140668191 140668225 -10115328 + (CA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr11 140670030 140670054 -10113499 + AT_rich Low_complexity Low_complexity 1 24 0 2094 144 0 0 chr11 140670344 140670642 -10112911 + AluSx SINE Alu 1 298 -14 1945 119 3 89 chr11 140671712 140672048 -10111505 - AluSx SINE Alu -5 307 1 26 50 0 0 chr11 140672488 140672528 -10111025 + AT_rich Low_complexity Low_complexity 1 40 0 2155 236 87 86 chr11 140677531 140677558 -10105995 + HAL1 LINE L1 1 26 -2481 369 0 0 0 chr11 140677558 140677599 -10105954 + (CA)n Simple_repeat Simple_repeat 2 42 0 2155 236 87 86 chr11 140677599 140678436 -10105117 + HAL1 LINE L1 26 866 -1641 2617 246 122 26 chr11 140678437 140679474 -10104079 + HAL1 LINE L1 1009 2144 -363 2331 88 0 10 chr11 140679479 140679787 -10103766 + AluY SINE Alu 1 305 -6 231 158 0 0 chr11 140679788 140679826 -10103727 + HAL1 LINE L1 2448 2485 -22 687 126 0 0 chr11 140680235 140680338 -10103215 + AluSp/q SINE Alu 163 265 -48 1918 131 0 70 chr11 140680339 140680479 -10103074 + AluJo SINE Alu 1 149 -163 2282 114 0 0 chr11 140680479 140680777 -10102776 + AluSx SINE Alu 1 298 -14 1918 131 0 70 chr11 140680777 140680965 -10102588 + AluJo SINE Alu 149 306 -6 223 263 293 0 chr11 140681073 140681172 -10102381 + MIR SINE MIR 105 232 -30 23 68 0 0 chr11 140681233 140681277 -10102276 + AT_rich Low_complexity Low_complexity 1 44 0 836 159 30 0 chr11 140681284 140681416 -10102137 + AluJo SINE Alu 1 136 -176 32 103 0 0 chr11 140681416 140681532 -10102021 + AT_rich Low_complexity Low_complexity 1 116 0 2282 84 37 3 chr11 140681690 140681987 -10101566 + AluY SINE Alu 1 307 -4 697 296 24 19 chr11 140682019 140682232 -10101321 - MIR SINE MIR -30 232 19 2165 147 0 6 chr11 140682285 140682598 -10100955 + AluSx SINE Alu 1 311 -1 220 208 125 108 chr11 140683449 140683499 -10100054 + MIR SINE MIR 13 61 -201 2327 108 3 0 chr11 140683499 140683805 -10099748 - AluSq SINE Alu -6 307 1 220 208 125 108 chr11 140683805 140683874 -10099679 + MIR SINE MIR 61 134 -128 254 220 169 42 chr11 140683904 140684022 -10099531 + MIR SINE MIR 124 256 -6 666 220 7 0 chr11 140684866 140685007 -10098546 - MIR SINE MIR -10 252 111 2360 104 3 0 chr11 140685521 140685828 -10097725 + AluSp SINE Alu 1 308 -5 373 320 61 7 chr11 140686087 140686234 -10097319 + MIR SINE MIR 35 189 -73 321 204 204 61 chr11 140686233 140686365 -10097188 - L2 LINE L2 -2 3311 3161 * 209 288 14 0 chr11 140686352 140686425 -10097128 + MIR SINE MIR 186 259 -3 * 241 366 0 18 chr11 140686528 140686640 -10096913 + L2 LINE L2 3160 3269 -3 2406 64 0 0 chr11 140686728 140687008 -10096545 + AluSx SINE Alu 1 280 -32 578 302 39 14 chr11 140687056 140687298 -10096255 + MIR SINE MIR 9 254 -8 198 341 65 0 chr11 140687589 140687712 -10095841 - MIR SINE MIR -79 183 53 2209 114 3 0 chr11 140688706 140689004 -10094549 + AluSx SINE Alu 1 299 -13 2118 132 0 7 chr11 140691392 140691702 -10091851 - AluSx SINE Alu -1 311 4 1674 180 9 22 chr11 140691969 140692286 -10091267 - MLT1F LTR MaLR -2 540 228 2520 196 80 22 chr11 140692286 140692822 -10090731 - MLT1E2 LTR MaLR 0 626 60 2081 128 0 25 chr11 140692831 140693151 -10090402 + AluSx SINE Alu 1 312 0 307 241 12 12 chr11 140693188 140693271 -10090282 - L1ME LINE L1 -621 5541 5459 1613 171 29 41 chr11 140693709 140694024 -10089529 + AluJb SINE Alu 1 311 -1 21 0 0 0 chr11 140694120 140694141 -10089412 + AT_rich Low_complexity Low_complexity 1 21 0 380 353 27 7 chr11 140694267 140694417 -10089136 - MIR3 SINE MIR -39 169 17 2325 76 3 3 chr11 140694868 140695169 -10088384 + AluSx SINE Alu 1 301 -11 1662 70 5 0 chr11 140695486 140695687 -10087866 + AluSp SINE Alu 96 297 -16 5118 209 71 60 chr11 140695698 140696036 -10087517 + L1MC4a LINE L1 6235 6568 -1240 2176 122 7 0 chr11 140696036 140696340 -10087213 - AluSg SINE Alu -3 307 2 5118 209 71 60 chr11 140696340 140696480 -10087073 + L1MC4a LINE L1 6568 6705 -1103 1482 62 57 5 chr11 140696480 140696650 -10086903 - AluY SINE Alu -10 301 118 441 0 0 0 chr11 140696650 140696699 -10086854 + (TG)n Simple_repeat Simple_repeat 2 50 0 1482 62 57 5 chr11 140696699 140696722 -10086831 - AluY SINE Alu -193 118 98 5118 209 71 60 chr11 140696722 140697601 -10085952 + L1MC4a LINE L1 6705 7614 -194 2221 93 3 3 chr11 140697601 140697890 -10085663 + AluSg SINE Alu 3 291 -19 5118 209 71 60 chr11 140697890 140698071 -10085482 + L1MC4a LINE L1 7614 7792 -16 210 301 0 60 chr11 140698318 140698401 -10085152 - L2 LINE L2 -50 3222 3145 1047 189 38 14 chr11 140698469 140698681 -10084872 + MIR SINE MIR 8 224 -38 1429 163 4 29 chr11 140698681 140698926 -10084627 + AluJb SINE Alu 55 293 -19 221 312 99 45 chr11 140699061 140699462 -10084091 - L2 LINE L2 -313 2959 2541 4223 171 36 13 chr11 140699501 140700288 -10083265 - L1MB8 LINE L1 0 6178 5374 1734 75 0 5 chr11 140700295 140700508 -10083045 - AluSq SINE Alu -97 216 5 254 352 28 0 chr11 140700703 140700811 -10082742 - L3 LINE CR1 -1274 303 193 2290 117 0 0 chr11 140700846 140701145 -10082408 - AluSx SINE Alu -13 299 1 398 248 21 41 chr11 140702375 140702520 -10081033 + MIR SINE MIR 66 207 -55 2054 248 49 25 chr11 140702528 140703198 -10080355 + L1MC4a LINE L1 5328 6013 -1795 2244 113 13 0 chr11 140703232 140703532 -10080021 - AluSx SINE Alu -8 304 1 2431 43 3 68 chr11 140703739 140704065 -10079488 - AluY SINE Alu -5 306 2 997 187 163 27 chr11 140704095 140704220 -10079333 + AluJo SINE Alu 1 108 -194 321 26 0 0 chr11 140704220 140704258 -10079295 + (TAA)n Simple_repeat Simple_repeat 2 39 0 997 187 163 27 chr11 140704258 140704389 -10079164 + AluJo SINE Alu 108 292 -10 2318 107 3 0 chr11 140704394 140704694 -10078859 + AluSp SINE Alu 1 301 -12 2126 118 3 3 chr11 140704761 140705058 -10078495 + AluSc SINE Alu 1 297 -12 207 0 0 0 chr11 140705208 140705231 -10078322 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 571 246 92 64 chr11 140705610 140705909 -10077644 - MLT1H LTR MaLR -222 327 1 610 277 128 17 chr11 140705947 140706182 -10077371 + MLT1H LTR MaLR 73 333 -216 435 187 121 0 chr11 140706241 140706332 -10077221 + MLT1H LTR MaLR 448 549 -6 1111 168 14 18 chr11 140706554 140706773 -10076780 - L1M3 LINE L1 -584 5587 5363 2277 95 0 3 chr11 140706773 140707067 -10076486 - AluSx SINE Alu -19 293 1 1111 168 14 18 chr11 140707067 140707120 -10076433 - L1M3 LINE L1 -808 5363 5311 1029 119 0 19 chr11 140707114 140707274 -10076279 + L1MA7 LINE L1 5517 5673 -618 * 2336 95 17 0 chr11 140707681 140707977 -10075576 + AluSx SINE Alu 1 301 -11 2218 103 0 3 chr11 140707978 140708303 -10075250 + AluSq SINE Alu 2 313 0 2020 166 36 20 chr11 140708330 140708547 -10075006 + L1MA7 LINE L1 5662 5874 -417 2023 116 37 3 chr11 140708547 140708841 -10074712 + AluSx SINE Alu 1 304 -8 2020 166 36 20 chr11 140708841 140709012 -10074541 + L1MA7 LINE L1 5874 6041 -250 580 180 0 16 chr11 140709012 140709138 -10074415 + L1MA7 LINE L1 6164 6289 -2 1493 181 52 24 chr11 140709392 140709680 -10073873 - AluJb SINE Alu -16 296 1 691 200 8 0 chr11 140709710 140709835 -10073718 - FLAM_C SINE Alu -7 126 1 2207 68 50 0 chr11 140709844 140710124 -10073429 - AluY SINE Alu -17 294 1 2418 106 0 0 chr11 140710392 140710695 -10072858 + AluSx SINE Alu 1 303 -9 1358 154 87 15 chr11 140710707 140710973 -10072580 + L1MB2 LINE L1 5883 6167 -4 226 269 19 0 chr11 140711073 140711125 -10072428 - L2 LINE L2 -15 3298 3246 1729 181 0 42 chr11 140711162 140711471 -10072082 + AluJo SINE Alu 1 296 -16 1748 125 24 61 chr11 140711474 140711808 -10071745 + AluJo SINE Alu 1 323 0 1100 188 46 33 chr11 140711831 140712070 -10071483 + L1M4 LINE L1 4458 4703 -1443 2053 146 0 3 chr11 140712070 140712372 -10071181 + AluSx SINE Alu 1 301 -11 1100 188 46 33 chr11 140712372 140712435 -10071118 + L1M4 LINE L1 4703 4764 -1382 910 269 93 58 chr11 140712463 140712527 -10071026 - MLT1H1 LTR MaLR 0 555 495 1816 131 13 49 chr11 140712527 140712832 -10070721 + AluJo SINE Alu 1 294 -18 910 269 93 58 chr11 140712832 140713250 -10070303 - MLT1H1 LTR MaLR -60 495 56 1064 141 18 6 chr11 140713266 140713280 -10070273 + AluY SINE Alu 119 131 -180 2485 61 0 10 chr11 140713280 140713576 -10069977 + AluY SINE Alu 7 299 -12 1064 141 18 6 chr11 140713576 140713731 -10069822 + AluY SINE Alu 131 290 -21 2097 130 34 0 chr11 140713731 140714023 -10069530 + AluSx SINE Alu 1 302 -10 427 259 34 111 chr11 140714311 140714636 -10068917 + L2 LINE L2 2924 3223 -49 585 130 158 107 chr11 140715846 140716023 -10067530 + MLT1C LTR MaLR 1 186 -281 1722 171 3 23 chr11 140716023 140716322 -10067231 + AluJb SINE Alu 1 293 -19 552 271 60 0 chr11 140716347 140716546 -10067007 - L1ME3A LINE L1 -191 5979 5769 349 78 0 0 chr11 140716650 140716701 -10066852 - AluSp SINE Alu -1 302 252 1651 123 11 15 chr11 140716804 140717064 -10066489 - AluSp SINE Alu -52 261 3 2395 63 0 54 chr11 140717132 140717447 -10066106 - AluY SINE Alu -13 298 1 2357 91 0 0 chr11 140717693 140717989 -10065564 - AluSc SINE Alu -13 296 1 2258 112 0 0 chr11 140718097 140718402 -10065151 - AluSx SINE Alu -3 309 5 22 0 0 0 chr11 140718513 140718535 -10065018 + AT_rich Low_complexity Low_complexity 1 22 0 2042 130 7 7 chr11 140718537 140718844 -10064709 + AluSx SINE Alu 1 307 -5 1444 174 4 39 chr11 140719327 140719608 -10063945 - AluSx SINE Alu 0 312 42 1357 159 106 22 chr11 140719748 140720069 -10063484 - L1MB8 LINE L1 -12 6166 5819 2171 103 0 10 chr11 140720069 140720371 -10063182 - AluSx SINE Alu -13 299 1 1034 183 151 7 chr11 140720378 140720730 -10062823 - L1ME3A LINE L1 -607 5577 5176 997 183 52 14 chr11 140720732 140720945 -10062608 + AluJb SINE Alu 90 310 -2 226 133 156 0 chr11 140721383 140721428 -10062125 - L2 LINE L2 0 3313 3262 2250 100 3 0 chr11 140721740 140722050 -10061503 + AluSp SINE Alu 1 311 -2 1578 143 58 10 chr11 140722510 140722803 -10060750 + AluSx SINE Alu 1 307 -5 1112 184 96 43 chr11 140723311 140723593 -10059960 + AluSx SINE Alu 1 297 -5 408 274 27 0 chr11 140724015 140724134 -10059419 + FLAM_A SINE Alu 1 96 -37 1619 151 35 11 chr11 140724194 140724479 -10059074 + AluSp SINE Alu 2 293 -20 405 138 12 38 chr11 140725818 140725898 -10057655 - U14 snRNA snRNA -1 86 9 674 69 0 11 chr11 140726650 140726737 -10056816 - U14 snRNA snRNA -1 86 1 412 136 23 45 chr11 140727076 140727164 -10056389 - U14 snRNA snRNA -1 86 1 211 284 108 49 chr11 140731306 140731408 -10052145 - MIR SINE MIR -63 145 38 269 264 128 8 chr11 140731611 140731736 -10051817 - MIR SINE MIR -50 212 73 416 234 194 8 chr11 140732357 140732481 -10051072 - MIR SINE MIR -1 261 115 1999 93 11 0 chr11 140732529 140732807 -10050746 - AluSx SINE Alu -31 281 1 1805 123 24 14 chr11 140732809 140733102 -10050451 - AluSx SINE Alu -10 302 7 760 162 0 10 chr11 140733170 140733337 -10050216 + AluJ SINE Alu 84 307 -5 506 301 124 14 chr11 140733785 140733994 -10049559 - MIR SINE MIR -14 248 17 1812 135 0 0 chr11 140734094 140734368 -10049185 + AluJb SINE Alu 23 296 -16 36 0 0 90 chr11 140734376 140734388 -10049165 + AT_rich Low_complexity Low_complexity 1 12 -59 1704 155 10 10 chr11 140734388 140734685 -10048868 - AluSg SINE Alu -13 297 1 36 0 0 90 chr11 140734685 140734750 -10048803 + AT_rich Low_complexity Low_complexity 12 71 0 227 222 0 28 chr11 140735042 140735114 -10048439 + GA-rich Low_complexity Low_complexity 3 72 0 258 327 69 0 chr11 140736169 140736270 -10047283 + L3b LINE CR1 1352 1459 -124 336 301 98 74 chr11 140736295 140736498 -10047055 - MIR SINE MIR -48 214 7 3436 166 25 62 chr11 140736584 140736643 -10046910 - L1MB3 LINE L1 -3 6180 6120 1809 121 21 0 chr11 140736643 140736925 -10046628 - AluSg SINE Alu -22 288 1 3436 166 25 62 chr11 140736925 140737471 -10046082 - L1MB3 LINE L1 -63 6120 5604 2318 58 3 3 chr11 140737471 140737764 -10045789 + AluSp SINE Alu 1 293 -20 3436 166 25 62 chr11 140737764 140737881 -10045672 - L1MB3 LINE L1 -579 5604 5484 180 77 0 0 chr11 140737886 140737912 -10045641 + (TA)n Simple_repeat Simple_repeat 1 26 0 2103 118 6 10 chr11 140738001 140738314 -10045239 + AluSx SINE Alu 1 312 0 274 191 11 101 chr11 140739178 140739267 -10044286 - MLT1L LTR MaLR -339 276 196 231 254 0 0 chr11 140739234 140739289 -10044264 - MLT1J1 LTR MaLR -321 125 71 * 252 299 77 50 chr11 140739566 140739787 -10043766 - MIR SINE MIR -34 228 2 417 292 75 12 chr11 140740309 140740470 -10043083 + MIR3 SINE MIR 19 189 -19 526 320 41 6 chr11 140740819 140740991 -10042562 + MIR3 SINE MIR 16 193 -15 2352 68 3 3 chr11 140741382 140741692 -10041861 - AluY SINE Alu -1 310 1 202 261 0 22 chr11 140741719 140741765 -10041788 - L2 LINE L2 -18 3254 3210 180 368 172 12 chr11 140741777 140741940 -10041613 - MIR SINE MIR -73 189 1 387 0 0 0 chr11 140742005 140742048 -10041505 + (CA)n Simple_repeat Simple_repeat 1 43 0 631 122 20 0 chr11 140742073 140742171 -10041382 - LTR49 LTR ERV1 -4 591 492 780 81 59 37 chr11 140742177 140742313 -10041240 + MER30 DNA MER1_type 1 139 -91 2089 107 10 3 chr11 140742313 140742622 -10040931 + AluSx SINE Alu 1 311 -1 2039 138 3 0 chr11 140742701 140743006 -10040547 + AluSx SINE Alu 1 306 -6 240 259 74 62 chr11 140743109 140743190 -10040363 - MIR SINE MIR -116 146 65 324 253 212 0 chr11 140743348 140743447 -10040106 + MIR3 SINE MIR 63 182 -26 2067 113 0 10 chr11 140743586 140743887 -10039666 + AluSg SINE Alu 1 298 -12 2105 102 0 3 chr11 140743892 140744218 -10039335 + AluSq SINE Alu 1 313 0 2014 166 36 20 chr11 140744245 140744462 -10039091 + L1MA7 LINE L1 5662 5874 -417 1905 116 37 3 chr11 140744462 140744756 -10038797 + AluSx SINE Alu 1 304 -8 2014 166 36 20 chr11 140744756 140744927 -10038626 + L1MA7 LINE L1 5874 6041 -250 566 180 0 16 chr11 140744927 140745053 -10038500 + L1MA7 LINE L1 6164 6289 -2 1988 120 13 13 chr11 140745285 140745585 -10037968 - AluSx SINE Alu -12 300 1 2186 91 0 0 chr11 140745611 140745930 -10037623 - AluSc SINE Alu 0 321 3 1797 149 0 23 chr11 140746065 140746367 -10037186 + AluSx SINE Alu 3 297 -15 455 239 77 8 chr11 140746453 140746583 -10036970 + MIR SINE MIR 122 260 -2 291 277 0 0 chr11 140746615 140746680 -10036873 + L2 LINE L2 3192 3256 -16 2295 90 0 28 chr11 140746685 140747006 -10036547 + AluSx SINE Alu 1 312 0 1707 178 7 0 chr11 140748387 140748679 -10034874 - AluSp SINE Alu -14 299 6 255 146 0 21 chr11 140748684 140748732 -10034821 + (GA)n Simple_repeat Simple_repeat 2 48 0 280 191 24 24 chr11 140748737 140748821 -10034732 + GA-rich Low_complexity Low_complexity 1 84 0 365 248 51 34 chr11 140749039 140749156 -10034397 - MIR SINE MIR -63 199 81 283 193 23 23 chr11 140749291 140749379 -10034174 + GA-rich Low_complexity Low_complexity 1 88 0 487 219 118 8 chr11 140749839 140749958 -10033595 + AluYa5 SINE Alu 163 294 -17 695 200 8 0 chr11 140749967 140750092 -10033461 + FLAM_C SINE Alu 1 126 -7 1615 169 53 3 chr11 140750122 140750406 -10033147 + AluJb SINE Alu 1 298 -14 676 194 0 23 chr11 140750534 140750663 -10032890 - FLAM_C SINE Alu -5 128 3 543 31 0 0 chr11 140750707 140750772 -10032781 + (TG)n Simple_repeat Simple_repeat 1 65 0 1535 116 34 78 chr11 140750775 140751068 -10032485 - AluSg SINE Alu -30 280 1 717 109 18 0 chr11 140751286 140751441 -10032112 + AluSg/x SINE Alu 196 352 0 180 149 43 85 chr11 140752371 140752418 -10031135 + MIR SINE MIR 86 130 -78 516 251 37 26 chr11 140752456 140752647 -10030906 - AluSp SINE Alu 0 313 121 2035 95 3 3 chr11 140752942 140753225 -10030328 - AluSg SINE Alu -27 283 1 1739 119 0 0 chr11 140753350 140753593 -10029960 - AluSx SINE Alu -56 256 14 2165 110 7 0 chr11 140753785 140754095 -10029458 + AluSq SINE Alu 1 312 -1 2309 88 3 0 chr11 140754499 140754806 -10028747 + AluSp SINE Alu 1 308 -5 2021 115 0 0 chr11 140754865 140755168 -10028385 - AluSc SINE Alu 0 303 1 1531 184 3 26 chr11 140755175 140755345 -10028208 - AluSx SINE Alu -5 307 146 1553 198 3 0 chr11 140755345 140755653 -10027900 - AluSp SINE Alu -4 309 1 1531 184 3 26 chr11 140755653 140755792 -10027761 - AluSx SINE Alu -166 146 5 26 0 0 0 chr11 140755799 140755825 -10027728 + AT_rich Low_complexity Low_complexity 1 26 0 70 0 0 0 chr11 140756007 140756077 -10027476 + AT_rich Low_complexity Low_complexity 1 70 0 406 301 13 67 chr11 140756082 140756398 -10027155 + AluSp SINE Alu 5 303 0 932 275 185 23 chr11 140756409 140757088 -10026465 + L2 LINE L2 2505 3308 -5 1592 155 53 0 chr11 140757223 140757488 -10026065 - AluSx SINE Alu -18 294 16 1107 112 6 0 chr11 140757649 140757810 -10025743 + AluSp SINE Alu 141 302 -11 285 274 116 21 chr11 140757913 140758103 -10025450 + L1ME2 LINE L1 5760 5967 -197 2074 81 21 11 chr11 140758145 140758428 -10025125 - AluSx SINE Alu -26 286 1 814 181 0 14 chr11 140758571 140758715 -10024838 + FLAM_C SINE Alu 2 143 0 180 0 0 0 chr11 140758720 140758740 -10024813 + (T)n Simple_repeat Simple_repeat 1 20 0 26 0 0 0 chr11 140758886 140758912 -10024641 + AT_rich Low_complexity Low_complexity 1 26 0 210 158 0 0 chr11 140758936 140758974 -10024579 + T-rich Low_complexity Low_complexity 1 38 0 2027 123 0 0 chr11 140759442 140759726 -10023827 + AluSx SINE Alu 1 284 -28 207 0 0 0 chr11 140759726 140759749 -10023804 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 330 312 84 60 chr11 140759754 140759969 -10023584 + L1MC/D LINE L1 5337 5556 -2252 319 235 92 0 chr11 140760010 140760108 -10023445 - L1ME3A LINE L1 -12 6158 6052 1011 135 16 21 chr11 140760117 140760309 -10023244 + AluSx SINE Alu 1 191 -121 568 129 0 21 chr11 140760310 140760403 -10023150 + AluSc SINE Alu 58 148 -161 25 0 0 0 chr11 140760517 140760542 -10023011 + AT_rich Low_complexity Low_complexity 1 25 0 403 274 0 0 chr11 140760714 140760809 -10022744 + AluSx SINE Alu 201 295 -5 860 269 4 8 chr11 140761385 140761653 -10021900 - AluSq SINE Alu -18 295 29 1021 219 9 83 chr11 140762130 140762454 -10021099 - AluY SINE Alu 0 301 2 997 191 163 27 chr11 140762484 140762609 -10020944 + AluJo SINE Alu 1 108 -194 321 26 0 0 chr11 140762609 140762647 -10020906 + (TAA)n Simple_repeat Simple_repeat 2 39 0 997 191 163 27 chr11 140762647 140762778 -10020775 + AluJo SINE Alu 108 292 -10 2179 107 3 0 chr11 140762783 140763082 -10020471 + AluSp SINE Alu 1 300 -13 205 100 0 100 chr11 140763103 140763153 -10020400 + (T)n Simple_repeat Simple_repeat 1 45 0 442 303 35 46 chr11 140763174 140763458 -10020095 + AluSp SINE Alu 21 301 -12 27 14 0 83 chr11 140763524 140763596 -10019957 + AT_rich Low_complexity Low_complexity 1 66 0 2363 78 3 0 chr11 140763702 140764008 -10019545 + AluSp SINE Alu 3 309 -4 746 239 0 6 chr11 140764011 140764174 -10019379 + AluSg/x SINE Alu 139 300 -9 2317 83 0 0 chr11 140764190 140764492 -10019061 + AluY SINE Alu 6 307 -4 38 85 0 0 chr11 140764510 140764604 -10018949 + AT_rich Low_complexity Low_complexity 1 94 0 628 189 13 20 chr11 140764681 140764834 -10018719 - AluSg/x SINE Alu 0 312 161 602 207 7 15 chr11 140764977 140765112 -10018441 - AluSq/x SINE Alu -177 135 2 26 50 0 0 chr11 140765334 140765374 -10018179 + AT_rich Low_complexity Low_complexity 1 40 0 2225 95 3 13 chr11 140765584 140765899 -10017654 + AluSx SINE Alu 1 312 0 643 72 0 0 chr11 140766281 140766364 -10017189 - AluSc SINE Alu -225 84 2 2149 98 0 3 chr11 140766385 140766701 -10016852 + AluSp SINE Alu 1 315 0 24 0 0 29 chr11 140766721 140766743 -10016810 + AT_rich Low_complexity Low_complexity 1 23 -11 1966 108 10 10 chr11 140766743 140767040 -10016513 + AluSg SINE Alu 1 297 -13 24 0 0 29 chr11 140767040 140767052 -10016501 + AT_rich Low_complexity Low_complexity 23 34 0 1960 135 0 7 chr11 140767060 140767356 -10016197 - AluSx SINE Alu -18 294 1 560 270 117 5 chr11 140767788 140767814 -10015739 + MIR SINE MIR 45 67 -195 2107 93 17 0 chr11 140767814 140768116 -10015437 + AluY SINE Alu 1 307 -4 560 270 117 5 chr11 140768116 140768285 -10015268 + MIR SINE MIR 67 262 0 1979 116 3 7 chr11 140769945 140770238 -10013315 + AluSx SINE Alu 1 292 -20 1641 152 42 3 chr11 140770246 140770529 -10013024 + AluSx SINE Alu 1 294 -18 669 137 0 0 chr11 140771105 140771200 -10012353 - AluSg/x SINE Alu -15 294 200 1806 149 0 23 chr11 140772966 140773274 -10010279 - AluJo SINE Alu -11 301 1 2149 120 0 0 chr11 140773739 140774047 -10009506 - AluSx SINE Alu -4 308 1 868 139 0 0 chr11 140774051 140774180 -10009373 - FLAM_C SINE Alu -6 137 9 345 287 64 32 chr11 140774274 140774431 -10009122 - L1MC4 LINE L1 -89 7953 7792 239 197 30 38 chr11 140775085 140775217 -10008336 + GA-rich Low_complexity Low_complexity 2 132 0 2372 76 3 19 chr11 140775288 140775605 -10007948 + AluSp SINE Alu 1 312 -1 782 334 182 19 chr11 140776046 140776624 -10006929 + L3 LINE CR1 665 1336 -241 2028 115 0 0 chr11 140776698 140776986 -10006567 + AluSg SINE Alu 9 296 -14 821 195 19 0 chr11 140776986 140777145 -10006408 + AluSg/x SINE Alu 132 293 -17 220 292 31 0 chr11 140777252 140777317 -10006236 + GA-rich Low_complexity Low_complexity 2 68 0 329 330 154 5 chr11 140777325 140777513 -10006040 + L3 LINE CR1 1355 1570 -7 1676 114 37 0 chr11 140777701 140777947 -10005606 - AluSx SINE Alu -57 255 1 462 150 12 0 chr11 140778442 140778522 -10005031 - AluJb SINE Alu -185 127 47 193 209 0 23 chr11 140778767 140778810 -10004743 - L3b LINE CR1 -10 1573 1532 2187 100 3 3 chr11 140778843 140779154 -10004399 - AluSq SINE Alu -2 311 1 2420 60 0 0 chr11 140779287 140779585 -10003968 - AluY SINE Alu -9 302 5 290 276 0 0 chr11 140779668 140779744 -10003809 + L3 LINE CR1 1074 1149 -428 333 68 0 0 chr11 140780941 140780985 -10002568 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 818 154 0 22 chr11 140780985 140781121 -10002432 - FLAM_C SINE Alu 0 133 1 657 313 73 20 chr11 140781226 140781472 -10002081 - MIR SINE MIR -2 260 2 1831 128 3 21 chr11 140781574 140781863 -10001690 - AluJo SINE Alu -28 284 1 1098 211 43 37 chr11 140782009 140782308 -10001245 + L1ME3A LINE L1 5855 6155 -15 1510 195 139 15 chr11 140782310 140782781 -10000772 - MLT1F LTR MaLR -8 534 1 2052 121 0 3 chr11 140782801 140783106 -10000447 + AluSq SINE Alu 1 304 -9 1208 95 0 0 chr11 140783483 140783641 -9999912 + AluSq SINE Alu 1 158 -155 333 270 84 66 chr11 140783682 140783908 -9999645 - MIR SINE MIR -1 261 32 2184 119 0 0 chr11 140783931 140784243 -9999310 - AluSx SINE Alu 0 312 1 2147 109 0 16 chr11 140784648 140784951 -9998602 - AluSx SINE Alu -14 298 1 2278 86 3 0 chr11 140785435 140785448 -9998105 - AluSp SINE Alu -10 303 292 1047 123 0 0 chr11 140785448 140785611 -9997942 + (TC)n Simple_repeat Simple_repeat 2 164 0 2278 86 3 0 chr11 140785611 140785899 -9997654 - AluSp SINE Alu -21 292 1 2012 134 0 0 chr11 140786203 140786502 -9997051 - AluSx SINE Alu -12 300 2 349 277 99 0 chr11 140786503 140786644 -9996909 - HAL1 LINE L1 -1066 1441 1287 773 189 8 0 chr11 140786656 140786788 -9996765 + AluJo SINE Alu 2 134 -178 285 196 65 33 chr11 140786818 140786910 -9996643 - HAL1 LINE L1 -1241 1266 1172 420 239 81 77 chr11 140786986 140787195 -9996358 + MIR SINE MIR 53 262 0 468 229 319 34 chr11 140787207 140787361 -9996192 - HAL1 LINE L1 -1481 1026 917 2275 73 3 7 chr11 140787361 140787663 -9995890 + AluY SINE Alu 1 301 -10 468 229 319 34 chr11 140787663 140787800 -9995753 - HAL1 LINE L1 -1590 917 652 2041 113 0 0 chr11 140787802 140788114 -9995439 - AluSx SINE Alu 0 312 1 1021 137 38 27 chr11 140788371 140788554 -9994999 - AluJo SINE Alu -127 185 1 347 231 0 0 chr11 140788554 140788619 -9994934 - HAL1 LINE L1 -2426 81 17 733 144 40 16 chr11 140788700 140788825 -9994728 - FLAM_C SINE Alu -3 130 3 231 229 0 0 chr11 140789299 140789360 -9994193 + CT-rich Low_complexity Low_complexity 4 64 0 1953 138 6 3 chr11 140789764 140790075 -9993478 - AluSx SINE Alu 0 312 1 858 150 0 8 chr11 140790698 140790831 -9992722 - FLAM_C SINE Alu 0 133 2 513 222 0 0 chr11 140791134 140791224 -9992329 - L2 LINE L2 -1 3312 3223 1681 184 0 3 chr11 140791421 140791714 -9991839 - AluJb SINE Alu -20 292 1 2265 86 0 7 chr11 140793051 140793355 -9990198 - AluSx SINE Alu -10 302 1 201 342 120 0 chr11 140793661 140793778 -9989775 + L2 LINE L2 3141 3271 -1 209 208 0 0 chr11 140793824 140793872 -9989681 + (TTAA)n Simple_repeat Simple_repeat 4 51 0 682 184 8 8 chr11 140793879 140794004 -9989549 - FLAM_C SINE Alu -16 127 3 2266 93 0 0 chr11 140794064 140794366 -9989187 + AluY SINE Alu 1 302 -9 25 75 0 0 chr11 140794429 140794482 -9989071 + AT_rich Low_complexity Low_complexity 1 53 0 2255 116 0 0 chr11 140794559 140794870 -9988683 - AluSx SINE Alu -1 311 1 561 216 87 39 chr11 140794989 140795197 -9988356 + L1M4 LINE L1 3562 3779 -2367 2161 90 10 7 chr11 140795203 140795502 -9988051 + AluSx SINE Alu 1 300 -12 304 269 119 0 chr11 140795567 140795701 -9987852 + MIR SINE MIR 65 214 -48 937 233 34 19 chr11 140795795 140796078 -9987475 - PABL_B LTR ERV1 0 667 368 2026 141 0 0 chr11 140796159 140796464 -9987089 - AluSx SINE Alu -3 309 5 260 320 54 61 chr11 140796466 140796763 -9986790 - PABL_A LTR ERV1 -318 342 48 265 368 65 19 chr11 140797072 140797227 -9986326 + L2 LINE L2 2920 3081 -191 231 61 0 0 chr11 140797332 140797365 -9986188 + (CA)n Simple_repeat Simple_repeat 1 33 0 2197 92 0 7 chr11 140797365 140797660 -9985893 - AluSc SINE Alu -16 293 1 1909 128 3 26 chr11 140797667 140797837 -9985716 - AluSx SINE Alu -5 307 146 2321 88 3 0 chr11 140797837 140798145 -9985408 - AluSp SINE Alu -4 309 1 1909 128 3 26 chr11 140798145 140798280 -9985273 - AluSx SINE Alu -166 146 9 2386 59 0 31 chr11 140798389 140798710 -9984843 - AluY SINE Alu 0 311 1 365 328 33 8 chr11 140799704 140799826 -9983727 + MIR SINE MIR 22 146 -116 4324 110 11 11 chr11 140799858 140800484 -9983069 + MER41B LTR ERV1 1 626 -9 1520 153 61 0 chr11 140800487 140800748 -9982805 + AluJb SINE Alu 25 301 -11 3624 113 2 4 chr11 140801047 140801559 -9981994 - MER9 LTR ERVK 0 511 1 287 326 33 0 chr11 140801981 140802073 -9981480 + MER21B LTR ERV1 17 111 -752 429 205 0 0 chr11 140802111 140802194 -9981359 + FLAM_A SINE Alu 1 83 -59 1532 254 109 46 chr11 140802206 140802746 -9980807 + MER21B LTR ERV1 141 714 -149 324 300 119 38 chr11 140802771 140802931 -9980622 + MIR SINE MIR 69 241 -21 347 252 55 31 chr11 140802959 140803086 -9980467 + MIR SINE MIR 87 216 -46 2192 94 16 3 chr11 140803490 140803797 -9979756 - AluSp SINE Alu -2 311 1 1044 117 155 48 chr11 140804314 140804544 -9979009 - AluSx SINE Alu 0 309 58 2194 111 0 0 chr11 140805263 140805561 -9977992 + AluSx SINE Alu 1 298 -14 1673 59 0 14 chr11 140805561 140805776 -9977777 + AluY SINE Alu 84 295 -16 541 238 92 12 chr11 140805892 140806087 -9977466 - MIR SINE MIR -58 204 3 1500 201 14 3 chr11 140806263 140806556 -9976997 + AluJo SINE Alu 1 296 -16 202 264 11 11 chr11 140806895 140806986 -9976567 + GA-rich Low_complexity Low_complexity 1 91 0 278 317 142 25 chr11 140807040 140807280 -9976273 + L2 LINE L2 1521 1788 -1526 21 0 0 0 chr11 140807352 140807373 -9976180 + AT_rich Low_complexity Low_complexity 1 21 0 275 262 87 0 chr11 140807423 140807526 -9976027 - L1ME4a LINE L1 0 6121 6010 1284 197 86 49 chr11 140807642 140808094 -9975459 - Charlie1 DNA MER1_type -26 2735 2267 693 216 22 7 chr11 140808119 140808258 -9975295 - Charlie1 DNA MER1_type -2620 141 1 265 264 126 0 chr11 140808258 140808341 -9975212 + MLT1L LTR MaLR 148 241 -374 243 189 0 0 chr11 140808562 140808615 -9974938 + GA-rich Low_complexity Low_complexity 3 55 0 242 296 11 57 chr11 140808673 140808761 -9974792 + L2 LINE L2 3230 3313 0 214 255 0 0 chr11 140808794 140808841 -9974712 - L3b LINE CR1 -252 1331 1285 495 221 48 35 chr11 140809062 140809207 -9974346 - MIR SINE MIR -70 192 46 259 305 28 99 chr11 140809745 140809778 -9973775 + MIR3 SINE MIR 36 70 -138 1066 197 137 48 chr11 140809778 140810113 -9973440 + MLT1A1 LTR MaLR 1 365 0 259 305 28 99 chr11 140810113 140810198 -9973355 + MIR3 SINE MIR 70 146 -62 1969 114 4 0 chr11 140810198 140810502 -9973051 + AluSx SINE Alu 1 305 0 259 305 28 99 chr11 140810502 140810522 -9973031 + MIR3 SINE MIR 146 166 -42 1792 170 0 10 chr11 140810592 140810903 -9972650 + AluJo SINE Alu 5 312 0 192 335 91 17 chr11 140811550 140811780 -9971773 - L2 LINE L2 -354 2960 2714 1710 164 10 10 chr11 140811788 140812087 -9971466 - AluSx SINE Alu -11 301 3 286 260 29 10 chr11 140812557 140812661 -9970892 + GA-rich Low_complexity Low_complexity 2 107 0 1827 162 0 13 chr11 140813216 140813531 -9970022 - AluJb SINE Alu 0 312 2 1234 148 53 168 chr11 140813830 140814242 -9969311 + MLT1A1 LTR MaLR 1 365 0 307 327 44 9 chr11 140814344 140814474 -9969079 - MIR SINE MIR -78 130 3 511 153 12 12 chr11 140815023 140815108 -9968445 + FRAM SINE Alu 65 149 -27 323 216 31 93 chr11 140815128 140815225 -9968328 + L1MC4 LINE L1 6613 6703 -1339 349 329 25 38 chr11 140815233 140815391 -9968162 - MER91A DNA MER1_type -39 157 2 1680 173 7 20 chr11 140817009 140817142 -9966411 + AluJo SINE Alu 1 134 -178 1991 124 3 0 chr11 140817142 140817474 -9966079 + AluSp SINE Alu 1 333 0 1680 173 7 20 chr11 140817474 140817640 -9965913 + AluJo SINE Alu 134 297 -15 2314 82 3 13 chr11 140818035 140818351 -9965202 - AluSq SINE Alu 0 313 1 1103 174 14 28 chr11 140818647 140818859 -9964694 + MER20 DNA MER1_type 11 219 0 768 175 0 29 chr11 140818875 140819012 -9964541 - FLAM_C SINE Alu -9 134 2 1427 241 86 61 chr11 140819118 140819641 -9963912 - MLT1H LTR MaLR -13 536 1 386 291 128 0 chr11 140819891 140820039 -9963514 + MIR SINE MIR 4 170 -92 192 255 64 0 chr11 140820159 140820206 -9963347 - L2 LINE L2 0 3313 3264 195 152 0 0 chr11 140825058 140825104 -9958449 + (CA)n Simple_repeat Simple_repeat 1 46 0 2195 104 0 0 chr11 140825622 140825933 -9957620 + AluSx SINE Alu 1 312 0 424 240 181 34 chr11 140826004 140826208 -9957345 + MIR SINE MIR 23 256 -6 1011 177 16 0 chr11 140826293 140826479 -9957074 + MER5A DNA MER1_type 1 189 0 2413 96 0 3 chr11 140826755 140827067 -9956486 - AluY SINE Alu 0 311 1 2358 100 13 0 chr11 140827181 140827490 -9956063 - AluSp SINE Alu 0 313 1 1898 135 16 22 chr11 140827550 140827862 -9955691 - AluJo SINE Alu -2 310 1 698 155 19 13 chr11 140828938 140829093 -9954460 + CT-rich Low_complexity Low_complexity 4 159 0 2393 97 0 7 chr11 140829102 140829412 -9954141 - AluSq SINE Alu -5 308 1 277 298 99 41 chr11 140829712 140829883 -9953670 - L2 LINE L2 -4 3309 3129 932 158 67 0 chr11 140829883 140830047 -9953506 - AluJb SINE Alu -6 306 132 207 0 0 0 chr11 140830063 140830086 -9953467 + (T)n Simple_repeat Simple_repeat 1 23 0 1072 135 191 132 chr11 140830351 140830494 -9953059 + MLT1C LTR MaLR 19 152 -315 1800 153 3 24 chr11 140830494 140830789 -9952764 + AluJb SINE Alu 1 289 -23 1072 135 191 132 chr11 140830789 140831068 -9952485 + MLT1C LTR MaLR 152 466 -1 2164 89 16 13 chr11 140831187 140831490 -9952063 - AluSp SINE Alu -7 306 3 2084 116 10 0 chr11 140831558 140831850 -9951703 - AluSp SINE Alu -13 300 6 2325 60 0 3 chr11 140831982 140832288 -9951265 - AluY SINE Alu 0 305 1 2054 114 50 0 chr11 140832492 140832772 -9950781 + AluSx SINE Alu 1 294 -18 778 288 187 13 chr11 140832906 140833584 -9949969 - L2 LINE L2 -5 3308 2505 2129 102 6 22 chr11 140833589 140833904 -9949649 - AluSq SINE Alu -3 310 1 2090 110 24 0 chr11 140833938 140834228 -9949325 - AluSp SINE Alu -16 297 1 2190 108 7 3 chr11 140834434 140834729 -9948824 + AluSq SINE Alu 7 302 -11 552 271 60 0 chr11 140834833 140835032 -9948521 + L1ME3A LINE L1 5769 5979 -191 2027 115 0 67 chr11 140835057 140835235 -9948318 - AluSx SINE Alu -19 293 143 2583 64 0 10 chr11 140835235 140835548 -9948005 - AluY SINE Alu 0 311 2 2027 115 0 67 chr11 140835548 140835683 -9947870 - AluSx SINE Alu -169 143 1 329 235 92 0 chr11 140835692 140835790 -9947763 + L1ME3A LINE L1 6052 6158 -12 2151 73 36 11 chr11 140836052 140836350 -9947203 - AluSg SINE Alu 0 305 1 1115 193 79 112 chr11 140836608 140836932 -9946621 - MLT1F1 LTR MaLR -184 383 73 2229 105 7 0 chr11 140836932 140837226 -9946327 - AluSq SINE Alu -12 301 6 1115 193 79 112 chr11 140837226 140837295 -9946258 - MLT1F1 LTR MaLR -494 73 3 262 123 130 201 chr11 140837388 140837468 -9946085 - LTR37B LTR ERV1 0 468 403 2212 105 0 32 chr11 140837468 140837781 -9945772 + AluSg SINE Alu 2 304 -6 262 123 130 201 chr11 140837781 140837854 -9945699 - LTR37B LTR ERV1 -65 403 326 415 231 150 89 chr11 140838089 140838193 -9945360 - MIR SINE MIR 0 262 166 1825 166 33 0 chr11 140838193 140838495 -9945058 + AluSx SINE Alu 1 312 0 415 231 150 89 chr11 140838495 140838637 -9944916 - MIR SINE MIR -96 166 1 1919 122 28 3 chr11 140838918 140839204 -9944349 - AluSg SINE Alu -17 293 1 2237 109 13 0 chr11 140839206 140839510 -9944043 - AluSx SINE Alu -4 308 1 479 189 53 0 chr11 140841701 140841796 -9941757 + MER4A LTR ERV1 1 100 -564 2026 132 24 3 chr11 140841854 140842150 -9941403 - AluSx SINE Alu -10 302 1 462 258 26 57 chr11 140842382 140842576 -9940977 - MIR SINE MIR -62 200 13 510 125 0 0 chr11 140843388 140843468 -9940085 + (GGA)n Simple_repeat Simple_repeat 2 81 0 190 358 44 44 chr11 140843657 140843794 -9939759 - L2 LINE L2 -15 3257 3121 2321 122 0 0 chr11 140844208 140844520 -9939033 - AluSx SINE Alu 0 312 1 1492 178 63 7 chr11 140844774 140845083 -9938470 + AluJb SINE Alu 1 324 0 241 218 35 69 chr11 140845144 140845231 -9938322 - MIR3 SINE MIR -4 204 121 486 163 44 163 chr11 140845374 140845534 -9938019 + MER103 DNA DNA 2 142 -24 544 286 7 7 chr11 140845959 140846113 -9937440 + MIR SINE MIR 4 157 -105 207 276 0 0 chr11 140846501 140846559 -9936994 - MIR SINE MIR -14 248 191 382 321 27 11 chr11 140847671 140847855 -9935698 - MIR SINE MIR -1 261 75 325 273 9 9 chr11 140847950 140848060 -9935493 - MIR SINE MIR -86 176 67 201 147 0 0 chr11 140848221 140848255 -9935298 + (A)n Simple_repeat Simple_repeat 1 34 0 779 238 30 13 chr11 140848410 140848645 -9934908 - MIR SINE MIR 0 262 24 375 240 5 125 chr11 140849287 140849444 -9934109 + MIR3 SINE MIR 3 133 -75 1933 114 29 63 chr11 140849444 140849624 -9933929 - AluSx SINE Alu -7 305 139 2249 113 0 0 chr11 140849624 140849925 -9933628 - AluY SINE Alu -10 301 1 1933 114 29 63 chr11 140849925 140850060 -9933493 - AluSx SINE Alu -173 139 1 375 240 5 125 chr11 140850060 140850102 -9933451 + MIR3 SINE MIR 133 178 -30 280 336 62 0 chr11 140851336 140851449 -9932104 - MIR SINE MIR -140 122 3 182 389 28 9 chr11 140851696 140851804 -9931749 + L3 LINE CR1 35 144 -1433 366 361 105 21 chr11 140852018 140852063 -9931490 - L2 LINE L2 -1 3312 3272 2167 169 70 7 chr11 140852063 140852466 -9931087 - MSTC LTR MaLR 0 428 1 366 361 105 21 chr11 140852466 140852979 -9930574 - L2 LINE L2 -41 3272 2699 609 176 0 63 chr11 140852998 140853140 -9930413 - FRAM SINE Alu -4 172 40 508 113 113 0 chr11 140853151 140853257 -9930296 - L1MA4 LINE L1 -3 6297 6180 277 250 299 14 chr11 140853262 140853406 -9930147 - L2 LINE L2 -604 2710 2526 830 193 34 28 chr11 140853440 140853616 -9929937 - AluJ SINE Alu -20 292 116 1950 129 33 0 chr11 140853617 140853889 -9929664 - AluSx SINE Alu -29 283 3 193 276 17 17 chr11 140853945 140854003 -9929550 + L3 LINE CR1 583 640 -937 2063 151 20 14 chr11 140854092 140854436 -9929117 - MLT1A1 LTR MaLR -18 347 2 196 250 0 17 chr11 140855914 140855974 -9927579 - L2 LINE L2 -214 3058 3000 2295 88 0 3 chr11 140856051 140856336 -9927217 + AluSq SINE Alu 1 284 -29 811 196 0 0 chr11 140856832 140856965 -9926588 - AluJ SINE Alu -169 133 1 1932 168 89 30 chr11 140856970 140857174 -9926379 - MSTC LTR MaLR 0 428 238 2241 104 152 11 chr11 140857174 140857549 -9926004 - MSTA LTR MaLR 0 428 1 1932 168 89 30 chr11 140857549 140857748 -9925805 - MSTC LTR MaLR -190 238 1 1613 203 3 7 chr11 140857787 140858087 -9925466 + AluJo SINE Alu 1 299 -13 1791 175 25 0 chr11 140858127 140858412 -9925141 - AluJb SINE Alu -19 293 2 760 306 113 34 chr11 140858902 140859548 -9924005 + L1MEd LINE L1 554 1250 -4869 332 201 15 90 chr11 140860326 140860460 -9923093 - L1ME1 LINE L1 -167 5999 5876 5370 133 17 0 chr11 140860496 140861314 -9922239 - L1PA16 LINE L1 0 6166 5335 1766 207 78 40 chr11 140861304 140861789 -9921764 - L1ME1 LINE L1 -269 5897 5387 * 1597 201 7 0 chr11 140861789 140862082 -9921471 - AluJb SINE Alu -17 295 1 1766 207 78 40 chr11 140862082 140862146 -9921407 - L1ME1 LINE L1 -779 5387 5327 996 225 30 124 chr11 140862148 140862574 -9920979 + MLT1B LTR MaLR 1 386 -4 1470 201 44 23 chr11 140862592 140862832 -9920721 - L1ME1 LINE L1 -874 5272 5038 1682 179 25 4 chr11 140862832 140863112 -9920441 - AluJb SINE Alu -26 286 1 1470 201 44 23 chr11 140863112 140863826 -9919727 - L1ME1 LINE L1 -1108 5038 4149 553 253 93 111 chr11 140864062 140864406 -9919147 - MLT1H LTR MaLR -13 536 199 259 239 15 15 chr11 140864458 140864525 -9919028 - MLT1H LTR MaLR -461 88 22 861 266 31 19 chr11 140864830 140865086 -9918467 - MLT1K LTR MaLR 0 588 330 378 225 22 11 chr11 140865075 140865164 -9918389 + Zaphod DNA AcHobo 186 275 -3756 * 2511 152 11 25 chr11 140865170 140865603 -9917950 + LTR3 LTR ERVK 3 429 -3 1567 212 60 89 chr11 140865615 140865795 -9917758 + Zaphod DNA AcHobo 280 464 -3567 1888 151 3 14 chr11 140865795 140866087 -9917466 + AluJb SINE Alu 2 290 -22 1567 212 60 89 chr11 140866087 140866638 -9916915 + Zaphod DNA AcHobo 464 990 -3041 921 185 97 5 chr11 140866655 140866850 -9916703 + MER58A DNA MER1_type 10 222 -2 4978 135 26 31 chr11 140866850 140867017 -9916536 + L1PA16 LINE L1 5314 5480 -686 2209 103 7 17 chr11 140867017 140867318 -9916235 + AluSx SINE Alu 1 298 -14 4978 135 26 31 chr11 140867318 140867955 -9915598 + L1PA16 LINE L1 5480 6115 -51 2414 92 7 0 chr11 140867955 140868259 -9915294 + AluSx SINE Alu 1 306 -6 4978 135 26 31 chr11 140868259 140868311 -9915242 + L1PA16 LINE L1 6115 6166 0 1387 216 82 10 chr11 140868344 140868732 -9914821 + Zaphod DNA AcHobo 3598 4013 -18 308 300 100 0 chr11 140868973 140869063 -9914490 + L3 LINE CR1 1435 1533 -44 270 192 19 0 chr11 140869067 140869119 -9914434 - L2 LINE L2 -6 3266 3214 195 365 26 26 chr11 140869974 140870089 -9913464 - MIR3 SINE MIR -87 121 7 382 303 92 0 chr11 140870217 140870369 -9913184 + MIR SINE MIR 47 212 -50 444 341 28 23 chr11 140870888 140871102 -9912451 - MIR SINE MIR -46 216 2 216 355 123 22 chr11 140871115 140871343 -9912210 - L2 LINE L2 -457 2857 2607 330 295 82 8 chr11 140871486 140871608 -9911945 - MLT1L LTR MaLR -62 553 423 680 243 174 9 chr11 140871974 140872192 -9911361 + Charlie2 DNA MER1_type 64 317 -2545 596 186 71 7 chr11 140872202 140872342 -9911211 + Charlie2 DNA MER1_type 1856 2004 -858 1630 162 61 7 chr11 140872346 140872624 -9910929 + AluJo SINE Alu 5 297 -15 1079 200 147 35 chr11 140872656 140873044 -9910509 + Charlie2 DNA MER1_type 2127 2569 -293 2336 96 3 3 chr11 140873044 140873345 -9910208 - AluSp SINE Alu -12 301 1 1079 200 147 35 chr11 140873345 140873386 -9910167 + Charlie2 DNA MER1_type 2569 2604 -258 661 246 62 36 chr11 140873387 140873582 -9909971 + L1MA9 LINE L1 6061 6260 -52 254 241 137 20 chr11 140873582 140873778 -9909775 + Charlie2 DNA MER1_type 2573 2805 -57 2378 85 0 0 chr11 140873778 140874072 -9909481 + AluY SINE Alu 1 294 -17 254 241 137 20 chr11 140874072 140874124 -9909429 + Charlie2 DNA MER1_type 2805 2850 -12 385 311 168 31 chr11 140874166 140874642 -9908911 - L2 LINE L2 -927 2387 1847 2386 75 0 3 chr11 140877314 140877638 -9905915 - AluY SINE Alu 0 311 2 450 216 0 0 chr11 140877882 140877970 -9905583 + L2 LINE L2 3225 3312 -1 2107 120 17 0 chr11 140878059 140878359 -9905194 + AluSx SINE Alu 3 307 -5 584 318 55 39 chr11 140878770 140879229 -9904324 + L2 LINE L2 2494 2959 -355 2133 137 0 6 chr11 140879285 140879598 -9903955 - AluSx SINE Alu -1 311 1 889 214 168 66 chr11 140879610 140879974 -9903579 + MER57A LTR ERV1 3 403 0 402 242 40 40 chr11 140880151 140880275 -9903278 + L2 LINE L2 3185 3308 -5 961 104 0 0 chr11 140880551 140880676 -9902877 + AluSc SINE Alu 2 126 -183 195 231 0 0 chr11 140880933 140880972 -9902581 + MER5A DNA MER1_type 151 189 0 990 83 8 8 chr11 140881045 140881178 -9902375 - U8 snRNA snRNA 0 136 4 1658 175 8 0 chr11 140882208 140882471 -9901082 - AluSx SINE Alu -26 286 22 7273 169 177 21 chr11 140882471 140883982 -9899571 - MER52A LTR ERV1 -9 1746 1 255 118 0 0 chr11 140883982 140884016 -9899537 - AluSx SINE Alu -266 34 1 1347 179 76 8 chr11 140884833 140884934 -9898619 + AluJo SINE Alu 10 103 -209 210 91 0 0 chr11 140884934 140884967 -9898586 + (CA)n Simple_repeat Simple_repeat 2 34 0 1347 179 76 8 chr11 140884967 140885127 -9898426 + AluJo SINE Alu 103 289 -23 2207 118 0 3 chr11 140886625 140886922 -9896631 + AluSq SINE Alu 1 296 -17 2277 108 0 0 chr11 140887518 140887813 -9895740 - AluSx SINE Alu -16 296 2 613 187 67 0 chr11 140887823 140887957 -9895596 - L1MC5 LINE L1 -60 7901 7759 25 65 0 0 chr11 140887965 140888011 -9895542 + AT_rich Low_complexity Low_complexity 1 46 0 2335 88 0 3 chr11 140888089 140888384 -9895169 + AluSx SINE Alu 2 295 -17 4093 120 56 6 chr11 140888428 140889086 -9894467 + Tigger3b DNA MER2_type 2 692 -539 1223 70 0 19 chr11 140889088 140889244 -9894309 - AluSp/q SINE Alu -3 310 158 1795 184 0 0 chr11 140889288 140889570 -9893983 + AluJb SINE Alu 13 294 -18 2787 136 13 76 chr11 140889570 140890107 -9893446 + Tigger3b DNA MER2_type 729 1231 -1 270 160 200 0 chr11 140890117 140890192 -9893361 - L1MC4 LINE L1 -1339 6703 6614 614 232 60 63 chr11 140890193 140890284 -9893269 - L1MC5 LINE L1 -355 7606 7516 2042 162 3 0 chr11 140890284 140890593 -9892960 - AluSx SINE Alu -2 310 1 614 232 60 63 chr11 140890593 140890820 -9892733 - L1MC5 LINE L1 -445 7516 7289 1336 228 196 16 chr11 140890996 140891439 -9892114 + MLT2F LTR ERVL 1 523 -140 1395 215 86 101 chr11 140891456 140892197 -9891356 - L1MC5 LINE L1 -770 7191 6455 237 211 0 0 chr11 140892201 140892253 -9891300 + (TA)n Simple_repeat Simple_repeat 1 52 0 1696 111 32 79 chr11 140892379 140892587 -9890966 + MSTB1 LTR MaLR 1 190 -242 2205 122 0 6 chr11 140892587 140892899 -9890654 + AluSx SINE Alu 2 311 -1 1696 111 32 79 chr11 140892899 140893005 -9890548 + MSTB1 LTR MaLR 190 300 -132 315 122 0 0 chr11 140893004 140893053 -9890500 + MSTB1 LTR MaLR 251 299 -133 * 969 152 28 17 chr11 140893053 140893231 -9890322 + MSTB1 LTR MaLR 251 430 -2 2270 149 12 27 chr11 140893380 140893782 -9889771 + L1MB1 LINE L1 5435 5830 -338 376 22 0 0 chr11 140893784 140893829 -9889724 + AluY SINE Alu 1 45 -256 1509 123 0 9 chr11 140893829 140894056 -9889497 + AluSg/x SINE Alu 86 310 0 1745 203 6 9 chr11 140894061 140894410 -9889143 + L1MB1 LINE L1 5820 6167 -1 552 131 36 0 chr11 140894617 140894701 -9888852 + MLT1F1 LTR MaLR 12 98 -469 708 154 0 24 chr11 140894702 140894825 -9888728 - FLAM_C SINE Alu 0 143 24 1980 212 76 20 chr11 140894837 140895286 -9888267 + MLT1F1 LTR MaLR 94 567 0 941 282 76 13 chr11 140895320 140895700 -9887853 - L1MC4a LINE L1 -1769 6039 5636 1754 154 49 0 chr11 140896524 140896809 -9886744 - AluJo SINE Alu -13 299 1 2833 3 0 0 chr11 140897347 140897645 -9885908 - AluYa5 SINE Alu -13 298 1 415 164 151 46 chr11 140898113 140898265 -9885288 - MER34 LTR ERV1 -5 537 370 494 165 0 0 chr11 140898266 140898345 -9885208 + FLAM_A SINE Alu 1 79 -53 208 237 0 0 chr11 140898351 140898389 -9885164 + polypurine Low_complexity Low_complexity 4 41 0 836 133 22 22 chr11 140898389 140898569 -9884984 + GA-rich Low_complexity Low_complexity 1 180 0 621 245 97 101 chr11 140898587 140898991 -9884562 - MER34 LTR ERV1 -162 403 1 265 279 0 0 chr11 140899086 140899147 -9884406 - MIR SINE MIR -63 145 85 2064 129 0 0 chr11 140899153 140899432 -9884121 + AluSg SINE Alu 1 279 -31 5596 60 16 0 chr11 140900768 140901473 -9882080 - L1PA8 LINE L1 0 6172 5457 206 264 46 69 chr11 140901672 140901759 -9881794 + L2 LINE L2 3186 3270 -2 2114 84 0 57 chr11 140901812 140901855 -9881698 + AluY SINE Alu 1 45 -334 3267 208 24 62 chr11 140901855 140902863 -9880690 - LTR5 LTR ERVK 0 969 1 2114 84 0 57 chr11 140902863 140903215 -9880338 + AluY SINE Alu 45 379 0 700 215 0 15 chr11 140903815 140903950 -9879603 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr11 140903950 140903974 -9879579 + AT_rich Low_complexity Low_complexity 1 24 0 1913 144 3 47 chr11 140904249 140904430 -9879123 + L1MB2 LINE L1 5828 5987 -184 2327 167 43 12 chr11 140904430 140904849 -9878704 + MSTB1 LTR MaLR 1 432 0 1913 144 3 47 chr11 140904849 140905027 -9878526 + L1MB2 LINE L1 5987 6171 0 630 239 0 73 chr11 140905465 140905670 -9877883 - MIR SINE MIR -38 224 35 1426 267 113 43 chr11 140905698 140906136 -9877417 + MER115 DNA AcHobo 1 500 -193 2019 142 7 0 chr11 140906136 140906425 -9877128 - AluSx SINE Alu -21 291 1 1426 267 113 43 chr11 140906425 140906633 -9876920 + MER115 DNA AcHobo 500 692 -1 182 300 100 0 chr11 140906694 140906764 -9876789 - MIR SINE MIR -27 235 159 1519 144 4 12 chr11 140906909 140907152 -9876401 + AluJb SINE Alu 66 306 -6 800 163 0 15 chr11 140907735 140907870 -9875683 + FLAM_C SINE Alu 1 133 0 1618 187 19 13 chr11 140907877 140908187 -9875366 + AluJo SINE Alu 1 312 0 1615 186 20 3 chr11 140908841 140909137 -9874416 + AluJo SINE Alu 1 301 -11 559 283 96 21 chr11 140909356 140909694 -9873859 - LTR16A LTR ERVL -2 455 89 399 239 14 58 chr11 140909780 140909918 -9873635 + L2 LINE L2 3182 3313 0 1240 233 43 118 chr11 140909997 140910230 -9873323 - L1MC4 LINE L1 -196 7846 7597 1902 116 4 0 chr11 140910230 140910488 -9873065 - AluSg SINE Alu -3 307 49 1240 233 43 118 chr11 140910488 140910543 -9873010 - L1MC4 LINE L1 -445 7597 7539 1829 183 0 3 chr11 140910543 140910854 -9872699 + AluJb SINE Alu 1 310 -2 1240 233 43 118 chr11 140910854 140910876 -9872677 - L1MC4 LINE L1 -503 7539 7517 1947 155 7 0 chr11 140910876 140911179 -9872374 - AluSx SINE Alu -7 305 1 1240 233 43 118 chr11 140911179 140911280 -9872273 - L1MC4 LINE L1 -525 7517 7410 1713 168 10 17 chr11 140911280 140911571 -9871982 - AluJo SINE Alu -18 294 6 1240 233 43 118 chr11 140911571 140911760 -9871793 - L1MC4 LINE L1 -632 7410 7288 1046 94 14 0 chr11 140911762 140911900 -9871653 - AluSx SINE Alu -159 153 14 2514 55 0 19 chr11 140912005 140912314 -9871239 + AluY SINE Alu 1 303 -8 2145 128 3 0 chr11 140912441 140912738 -9870815 - AluSx SINE Alu -5 307 10 2371 110 0 0 chr11 140912863 140913172 -9870381 - AluSg SINE Alu -1 309 1 523 303 33 84 chr11 140913582 140913915 -9869638 + L2 LINE L2 2902 3217 -55 1912 172 3 0 chr11 140913927 140914224 -9869329 - AluJo SINE Alu -14 298 1 2249 125 3 0 chr11 140915594 140915905 -9867648 + AluSx SINE Alu 1 312 0 284 291 77 0 chr11 140915970 140916087 -9867466 + MIR SINE MIR 66 191 -71 2159 86 7 7 chr11 140920030 140920310 -9863243 + AluSq SINE Alu 1 280 -33 873 29 0 0 chr11 140920310 140920414 -9863139 + (GGAA)n Simple_repeat Simple_repeat 1 104 0 21 0 0 0 chr11 140922569 140922590 -9860963 + AT_rich Low_complexity Low_complexity 1 21 0 1994 150 0 0 chr11 140922643 140922949 -9860604 - AluJo SINE Alu -6 306 1 464 250 101 89 chr11 140923016 140923119 -9860434 - MIR SINE MIR -1 261 161 2171 104 3 0 chr11 140923119 140923417 -9860136 + AluSx SINE Alu 1 299 -13 464 250 101 89 chr11 140923417 140923561 -9859992 - MIR SINE MIR -101 161 11 340 287 37 21 chr11 140923730 140923918 -9859635 - L1ME LINE L1 -303 5818 5628 473 314 77 74 chr11 140925047 140925477 -9858076 + L2 LINE L2 2804 3234 -38 347 234 108 18 chr11 140925910 140926017 -9857536 - MLT1L LTR MaLR -460 155 39 1062 243 154 22 chr11 140926017 140926575 -9856978 + LTR50 LTR ERVL 1 737 -58 2053 91 3 7 chr11 140926575 140926860 -9856693 - AluSq SINE Alu -8 305 22 1062 243 154 22 chr11 140926860 140926928 -9856625 + LTR50 LTR ERVL 737 795 0 1929 176 45 15 chr11 140927078 140927523 -9856030 + MER89 LTR ERV1 2 559 0 604 245 39 26 chr11 140927529 140927684 -9855869 - MIR SINE MIR -74 188 32 210 335 100 35 chr11 140927684 140927884 -9855669 + L2 LINE L2 3048 3260 -12 252 0 0 0 chr11 140927884 140927912 -9855641 + (T)n Simple_repeat Simple_repeat 1 28 0 27 0 0 0 chr11 140927932 140927959 -9855594 + GC_rich Low_complexity Low_complexity 1 27 0 315 280 8 53 chr11 140928077 140928209 -9855344 + Alu SINE Alu 176 301 0 24 32 0 0 chr11 140928258 140928289 -9855264 + AT_rich Low_complexity Low_complexity 1 31 0 38 0 0 0 chr11 140928603 140928641 -9854912 + AT_rich Low_complexity Low_complexity 1 38 0 1059 272 54 48 chr11 140928667 140929057 -9854496 - HAL1 LINE L1 -29 2478 2092 183 42 0 0 chr11 140929057 140929081 -9854472 + (CATTT)n Simple_repeat Simple_repeat 2 25 0 2096 120 0 0 chr11 140929081 140929373 -9854180 - AluSx SINE Alu -20 292 1 1059 272 54 48 chr11 140929373 140929503 -9854050 - HAL1 LINE L1 -414 2093 1954 335 303 24 24 chr11 140929602 140929767 -9853786 - L1ME LINE L1 -336 5785 5621 225 0 0 0 chr11 140930714 140930739 -9852814 + (T)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chr11 140930885 140930907 -9852646 + (A)n Simple_repeat Simple_repeat 1 22 0 793 283 79 17 chr11 140931827 140932067 -9851486 - MIR SINE MIR -7 255 1 302 115 19 0 chr11 140932107 140932159 -9851394 + CT-rich Low_complexity Low_complexity 1 53 0 1377 61 0 0 chr11 140932159 140932339 -9851214 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1325 137 14 5 chr11 140932341 140932552 -9851001 - AluY SINE Alu -18 293 81 1650 169 26 13 chr11 140932579 140932881 -9850672 - AluJb SINE Alu -6 306 1 184 278 0 0 chr11 140932881 140932935 -9850618 + MIR SINE MIR 64 117 -145 3196 177 52 10 chr11 140933632 140934249 -9849304 - L1MB7 LINE L1 -57 6127 5485 381 234 172 39 chr11 140934425 140934553 -9849000 + MIR SINE MIR 118 262 0 670 293 133 18 chr11 140934641 140935040 -9848513 - L2 LINE L2 -26 3287 2843 488 281 98 45 chr11 140935640 140935886 -9847667 + MIR SINE MIR 3 261 -1 227 100 0 25 chr11 140935890 140935920 -9847633 + (CTA)n Simple_repeat Simple_repeat 3 33 -8 1856 164 0 0 chr11 140935920 140936219 -9847334 - AluSx SINE Alu -13 299 1 227 100 0 25 chr11 140936219 140936228 -9847325 + (CTA)n Simple_repeat Simple_repeat 33 41 0 466 252 49 8 chr11 140936467 140936590 -9846963 - MIR SINE MIR -25 237 110 406 354 62 0 chr11 140937569 140937730 -9845823 - L2 LINE L2 -1 3271 3101 187 305 186 8 chr11 140937858 140937976 -9845577 - L2 LINE L2 -244 3028 2890 2086 125 3 3 chr11 140937989 140938301 -9845252 - AluJo SINE Alu 0 312 1 227 245 32 64 chr11 140938433 140938478 -9845075 - L2 LINE L2 -557 2757 2712 1989 126 14 0 chr11 140938478 140938772 -9844781 - AluSx SINE Alu -14 298 1 227 245 32 64 chr11 140938772 140938820 -9844733 - L2 LINE L2 -602 2712 2667 888 111 8 0 chr11 140939212 140939338 -9844215 + FLAM_C SINE Alu 1 127 -16 26 0 0 0 chr11 140939338 140939364 -9844189 + AT_rich Low_complexity Low_complexity 1 26 0 427 357 129 30 chr11 140939386 140940008 -9843545 - L2 LINE L2 -2290 1024 342 238 344 43 87 chr11 140940353 140940676 -9842877 + L2 LINE L2 2449 2757 -557 2088 108 0 13 chr11 140941131 140941436 -9842117 - AluSq SINE Alu -12 301 1 234 218 115 13 chr11 140941464 140941542 -9842011 + L2 LINE L2 3226 3311 -2 1167 158 54 23 chr11 140942341 140942650 -9840903 - AluJo SINE Alu 0 335 19 234 0 0 0 chr11 140942838 140942864 -9840689 + (T)n Simple_repeat Simple_repeat 1 26 0 285 98 0 0 chr11 140943071 140943112 -9840441 + (T)n Simple_repeat Simple_repeat 1 41 0 181 268 61 37 chr11 140943646 140943728 -9839825 - L3 LINE CR1 -99 1478 1395 503 339 122 0 chr11 140943796 140944017 -9839536 + MIR SINE MIR 3 250 -12 763 128 0 0 chr11 140944221 140944338 -9839215 + AluSg/x SINE Alu 194 310 -2 594 297 38 46 chr11 140944734 140944997 -9838556 + MIR SINE MIR 1 261 -1 751 134 0 0 chr11 140946086 140946205 -9837348 + AluSg/x SINE Alu 192 310 0 330 26 0 0 chr11 140946981 140947020 -9836533 + (CA)n Simple_repeat Simple_repeat 1 39 0 610 209 144 7 chr11 140947957 140948096 -9835457 - MER3 DNA MER1_type -47 162 5 192 171 14 43 chr11 140948818 140948888 -9834665 + CT-rich Low_complexity Low_complexity 3 70 0 481 256 15 15 chr11 140949217 140949354 -9834199 - MIR3 SINE MIR -6 202 66 199 190 86 35 chr11 140950281 140950339 -9833214 + MIR3 SINE MIR 138 198 -10 1929 143 3 0 chr11 140950390 140950690 -9832863 + AluSx SINE Alu 1 301 -11 255 125 0 0 chr11 140950897 140950937 -9832616 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 309 109 0 0 chr11 140951067 140951113 -9832440 + (A)n Simple_repeat Simple_repeat 1 46 0 1782 169 0 19 chr11 140951399 140951706 -9831847 + AluJo SINE Alu 1 301 -11 255 291 128 12 chr11 140951888 140951974 -9831579 - MIR SINE MIR -6 256 161 1756 147 0 38 chr11 140951976 140952295 -9831258 + AluJb SINE Alu 1 307 -5 2004 131 0 3 chr11 140952419 140952716 -9830837 + AluSx SINE Alu 1 296 -16 2118 109 0 35 chr11 140953835 140954147 -9829406 + AluSx SINE Alu 1 301 -11 508 270 56 45 chr11 140954374 140954552 -9829001 - MIR SINE MIR -59 203 24 225 362 96 25 chr11 140954853 140955135 -9828418 - L2 LINE L2 -89 3183 2882 909 208 82 5 chr11 140955589 140955796 -9827757 + MER58A DNA MER1_type 2 224 0 416 271 65 39 chr11 140955896 140956051 -9827502 - L2 LINE L2 0 3313 3155 247 330 42 102 chr11 140956131 140956413 -9827140 - L2 LINE L2 -1259 2055 1758 2150 123 3 0 chr11 140956413 140956722 -9826831 + AluSx SINE Alu 1 310 -2 247 330 42 102 chr11 140956722 140956765 -9826788 - L2 LINE L2 -1556 1758 1714 198 71 0 0 chr11 140956765 140956793 -9826760 + (TA)n Simple_repeat Simple_repeat 2 29 0 247 330 42 102 chr11 140956793 140957008 -9826545 - L2 LINE L2 -1600 1714 1546 570 286 22 83 chr11 140957015 140957291 -9826262 - MIR SINE MIR 0 262 4 279 0 0 0 chr11 140957346 140957377 -9826176 + (GA)n Simple_repeat Simple_repeat 1 31 0 711 265 48 13 chr11 140957547 140957777 -9825776 + LTR33 LTR ERVL 49 286 -235 509 229 16 8 chr11 140957792 140957914 -9825639 + LTR33 LTR ERVL 392 514 -7 25 0 0 0 chr11 140958367 140958392 -9825161 + AT_rich Low_complexity Low_complexity 1 25 0 3052 185 46 12 chr11 140960257 140961137 -9822416 + L1MB7 LINE L1 4997 5902 -282 416 301 63 19 chr11 140961181 140961387 -9822166 + L3 LINE CR1 1362 1576 -1 30 27 0 0 chr11 140961734 140961771 -9821782 + AT_rich Low_complexity Low_complexity 1 37 0 232 203 17 17 chr11 140962084 140962143 -9821410 + L1 LINE L1 5197 5255 -891 379 288 174 0 chr11 140962161 140962293 -9821260 - MIR3 SINE MIR -21 187 33 345 341 16 8 chr11 140962318 140962441 -9821112 + MIR SINE MIR 20 143 -119 198 80 0 0 chr11 140964688 140964713 -9818840 + L2 LINE L2 3234 3258 -14 748 173 0 22 chr11 140965162 140965301 -9818252 - FLAM_A SINE Alu -1 141 6 712 294 46 13 chr11 140965319 140965557 -9817996 + MIR SINE MIR 3 248 -14 1912 151 3 0 chr11 140967420 140967725 -9815828 - AluSx SINE Alu -6 306 1 359 333 61 14 chr11 140968101 140968248 -9815305 + MIR3 SINE MIR 23 176 -32 218 320 50 0 chr11 140969821 140969921 -9813632 + L2 LINE L2 1311 1415 -1899 1926 134 10 7 chr11 140969946 140970252 -9813301 + AluJb SINE Alu 4 310 -2 189 0 0 0 chr11 140971322 140971343 -9812210 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1725 163 0 3 chr11 140971346 140971629 -9811924 - AluJo SINE Alu -30 282 1 357 239 17 103 chr11 140973154 140973271 -9810282 - MIR SINE MIR -123 139 33 344 302 38 38 chr11 140974131 140974290 -9809263 + L3b LINE CR1 1318 1476 -107 797 299 41 16 chr11 140975305 140975549 -9808004 + MIR SINE MIR 12 261 -1 790 173 0 15 chr11 140976056 140976189 -9807364 - FLAM_C SINE Alu -2 131 1 210 71 0 0 chr11 140976256 140976284 -9807269 + (T)n Simple_repeat Simple_repeat 1 28 0 213 351 27 27 chr11 140976291 140976402 -9807151 - L2 LINE L2 -584 2730 2620 434 352 82 17 chr11 140976592 140976825 -9806728 - MIR SINE MIR -12 250 3 360 311 51 38 chr11 140976829 140977064 -9806489 - L2 LINE L2 -1328 1986 1749 326 141 0 16 chr11 140977165 140977229 -9806324 + (GGAGA)n Simple_repeat Simple_repeat 5 67 0 225 0 0 0 chr11 140977271 140977296 -9806257 + (TG)n Simple_repeat Simple_repeat 2 26 0 235 365 41 28 chr11 140977697 140977842 -9805711 - L2 LINE L2 -220 3052 2906 290 56 0 0 chr11 140977842 140977878 -9805675 + U2 snRNA snRNA 1 36 -152 229 224 80 18 chr11 140978974 140979068 -9804485 - MIR SINE MIR -46 162 58 497 244 199 6 chr11 140979643 140979799 -9803754 - MIR SINE MIR -71 191 6 210 231 0 0 chr11 140980748 140980787 -9802766 + polypyrimidine Low_complexity Low_complexity 1 39 0 441 0 0 0 chr11 140980790 140980839 -9802714 + (CA)n Simple_repeat Simple_repeat 1 49 0 1783 152 13 10 chr11 140980879 140981188 -9802365 - AluJo SINE Alu 0 312 3 222 224 0 20 chr11 140981278 140981327 -9802226 + L3 LINE CR1 1519 1566 -11 204 368 60 38 chr11 140982122 140982255 -9801298 - L3b LINE CR1 -35 1548 1413 965 173 0 23 chr11 140982477 140982650 -9800903 + AluJo SINE Alu 5 173 -139 1377 153 9 0 chr11 140982655 140982883 -9800670 - AluSx SINE Alu -82 230 1 318 224 0 0 chr11 140982885 140982970 -9800583 - L1MA4 LINE L1 -3 6297 6213 2140 120 0 0 chr11 140983144 140983445 -9800108 - AluSg SINE Alu -9 301 1 660 265 81 19 chr11 140983537 140983748 -9799805 + MIR SINE MIR 25 248 -14 2378 84 0 0 chr11 140985137 140985477 -9798076 + AluSc SINE Alu 1 340 0 381 289 81 0 chr11 140985616 140985813 -9797740 + L1ME3A LINE L1 5767 5979 -191 1911 115 0 64 chr11 140985838 140986015 -9797538 - AluSx SINE Alu -19 293 143 2454 64 0 6 chr11 140986015 140986327 -9797226 - AluY SINE Alu 0 311 2 1911 115 0 64 chr11 140986327 140986462 -9797091 - AluSx SINE Alu -169 143 1 319 235 92 0 chr11 140986471 140986569 -9796984 + L1ME3A LINE L1 6052 6158 -12 303 310 83 65 chr11 140986610 140986826 -9796727 - L1MC/D LINE L1 -2252 5556 5337 2029 73 36 11 chr11 140986831 140987129 -9796424 - AluSg SINE Alu 0 305 1 1044 199 81 112 chr11 140987387 140987710 -9795843 - MLT1F1 LTR MaLR -184 383 73 2114 105 7 0 chr11 140987710 140988005 -9795548 - AluSq SINE Alu -11 302 6 1044 199 81 112 chr11 140988005 140988074 -9795479 - MLT1F1 LTR MaLR -494 73 3 2089 105 0 32 chr11 140988248 140988561 -9794992 + AluSg SINE Alu 2 304 -6 516 231 150 89 chr11 140988869 140988973 -9794580 - MIR SINE MIR 0 262 166 1715 166 33 0 chr11 140988973 140989275 -9794278 + AluSx SINE Alu 1 312 0 516 231 150 89 chr11 140989275 140989417 -9794136 - MIR SINE MIR -96 166 1 1811 122 28 3 chr11 140989698 140989985 -9793568 - AluSg SINE Alu -16 294 1 2112 109 13 0 chr11 140989987 140990291 -9793262 - AluSx SINE Alu -4 308 1 198 254 153 0 chr11 140992361 140992420 -9791133 - MIR SINE MIR -117 145 78 512 194 84 159 chr11 140992479 140992628 -9790925 + MER4A LTR ERV1 1 160 -504 2030 113 7 0 chr11 140992628 140992933 -9790620 - AluSx SINE Alu 0 307 1 512 194 84 159 chr11 140992933 140993128 -9790425 + MER4A LTR ERV1 160 320 -344 2087 120 0 13 chr11 140993145 140993461 -9790092 - AluSx SINE Alu 0 312 1 970 82 15 0 chr11 140993461 140993595 -9789958 - AluSq/x SINE Alu -176 137 2 900 176 0 18 chr11 140994123 140994293 -9789260 + AluJb SINE Alu 142 308 -4 1935 137 0 26 chr11 140994298 140994440 -9789113 + AluSx SINE Alu 3 147 -165 2321 88 3 0 chr11 140994440 140994748 -9788805 + AluSp SINE Alu 1 309 -4 1935 137 0 26 chr11 140994748 140994918 -9788635 + AluSx SINE Alu 147 307 -5 2022 115 0 0 chr11 140994925 140995228 -9788325 + AluSc SINE Alu 1 303 0 2329 85 3 0 chr11 140995287 140995594 -9787959 - AluSp SINE Alu -5 308 1 2165 110 7 0 chr11 140995998 140996308 -9787245 - AluSq SINE Alu -1 312 1 325 154 105 167 chr11 140996446 140996500 -9787053 + MER112 DNA MER1_type 7 63 -197 1739 119 0 0 chr11 140996500 140996743 -9786810 + AluSx SINE Alu 14 256 -56 325 154 105 167 chr11 140996743 140996850 -9786703 + MER112 DNA MER1_type 63 158 -102 2432 56 0 37 chr11 140996868 140997190 -9786363 + AluY SINE Alu 1 310 -1 2102 90 38 0 chr11 140997202 140997491 -9786062 + AluSp SINE Alu 1 300 -13 1485 124 120 40 chr11 140997548 140997823 -9785730 + AluSc SINE Alu 1 297 -12 304 269 119 0 chr11 140997888 140998022 -9785531 + MIR SINE MIR 65 214 -48 937 233 34 19 chr11 140998116 140998399 -9785154 - PABL_B LTR ERV1 0 667 368 2026 141 0 0 chr11 140998480 140998785 -9784768 - AluSx SINE Alu -3 309 5 260 320 54 61 chr11 140998787 140999084 -9784469 - PABL_A LTR ERV1 -318 342 48 265 368 65 19 chr11 140999393 140999548 -9784005 + L2 LINE L2 2920 3081 -191 231 61 0 0 chr11 140999653 140999686 -9783867 + (CA)n Simple_repeat Simple_repeat 1 33 0 2255 92 0 0 chr11 140999686 140999980 -9783573 - AluSg SINE Alu -16 294 1 1990 134 0 7 chr11 140999983 141000282 -9783271 - AluSg SINE Alu -13 297 1 2117 114 0 0 chr11 141000292 141000590 -9782963 - AluSg SINE Alu -12 298 1 228 118 29 0 chr11 141000603 141000637 -9782916 - Alu SINE Alu -12 163 129 1781 119 0 73 chr11 141000751 141001053 -9782500 - AluSx SINE Alu -32 280 1 21 0 0 0 chr11 141001152 141001173 -9782380 + AT_rich Low_complexity Low_complexity 1 21 0 1705 155 20 0 chr11 141001487 141001791 -9781762 - AluJb SINE Alu -2 310 1 664 194 8 16 chr11 141001956 141002080 -9781473 - FLAM_A SINE Alu -10 123 1 692 217 0 0 chr11 141002199 141002319 -9781234 - FLAM_A SINE Alu -13 120 1 421 221 114 30 chr11 141002332 141002463 -9781090 + L2 LINE L2 3172 3313 0 899 235 62 40 chr11 141002657 141002685 -9780868 - MER31B LTR ERV1 0 466 440 1660 119 97 4 chr11 141002685 141002954 -9780599 - AluSx SINE Alu -18 294 1 899 235 62 40 chr11 141002954 141003338 -9780215 - MER31B LTR ERV1 -26 440 7 1849 126 31 0 chr11 141003465 141003759 -9779794 + AluSx SINE Alu 1 303 -9 1024 168 0 0 chr11 141003761 141003928 -9779625 + AluSg/x SINE Alu 134 300 -10 1381 147 11 128 chr11 141004183 141004536 -9779017 - AluJo SINE Alu 0 312 1 1055 181 0 0 chr11 141004543 141004714 -9778839 - FAM SINE Alu -4 171 1 2040 122 30 0 chr11 141004717 141005012 -9778541 - AluSx SINE Alu -7 305 2 2212 105 0 0 chr11 141005618 141005912 -9777641 - AluSq SINE Alu -19 294 1 189 0 0 0 chr11 141005912 141005933 -9777620 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1117 227 3 25 chr11 141005938 141006086 -9777467 - AluJo SINE Alu -30 282 141 2100 72 45 7 chr11 141006086 141006377 -9777176 - AluSg1 SINE Alu -7 302 1 1117 227 3 25 chr11 141006377 141006514 -9777039 - AluJo SINE Alu -171 141 3 184 239 22 22 chr11 141006617 141006663 -9776890 - MIR3 SINE MIR -1 207 162 197 329 61 0 chr11 141006851 141006933 -9776620 + MIR SINE MIR 162 248 -14 361 307 81 54 chr11 141007207 141007473 -9776080 - L2 LINE L2 -578 2736 2458 2097 74 10 42 chr11 141007473 141007782 -9775771 + AluSx SINE Alu 1 299 -13 361 307 81 54 chr11 141007782 141007847 -9775706 - L2 LINE L2 -856 2458 2396 2095 98 14 7 chr11 141008496 141008791 -9774762 - AluSx SINE Alu -15 297 1 1829 130 80 64 chr11 141008994 141009286 -9774267 + LTR8A LTR ERV1 1 302 -425 1849 149 3 3 chr11 141009286 141009581 -9773972 + AluJb SINE Alu 1 295 -17 1829 130 80 64 chr11 141009581 141009664 -9773889 + LTR8A LTR ERV1 302 382 -345 2242 94 0 0 chr11 141009664 141009963 -9773590 - AluSc SINE Alu -10 299 1 1670 124 76 0 chr11 141009966 141010241 -9773312 - AluSx SINE Alu -16 296 1 305 333 108 17 chr11 141010272 141010392 -9773161 + L2 LINE L2 3134 3264 -8 * 307 191 29 76 chr11 141010388 141010493 -9773060 - MIR3 SINE MIR -42 166 67 210 171 0 0 chr11 141011067 141011108 -9772445 + CT-rich Low_complexity Low_complexity 2 42 0 2145 111 0 0 chr11 141011217 141011514 -9772039 - AluSx SINE Alu -15 297 1 1272 123 223 0 chr11 141011514 141011764 -9771789 - AluSx SINE Alu -5 307 1 2048 112 0 10 chr11 141011774 141012070 -9771483 - AluSg SINE Alu -17 293 1 324 253 212 0 chr11 141012209 141012308 -9771245 - MIR3 SINE MIR -26 182 63 249 256 73 61 chr11 141012466 141012548 -9771005 + MIR SINE MIR 65 147 -115 422 113 0 14 chr11 141012729 141012800 -9770753 + (TCCC)n Simple_repeat Simple_repeat 3 72 0 2024 138 3 3 chr11 141012804 141013115 -9770438 - AluSx SINE Alu -1 311 1 2202 94 10 0 chr11 141013194 141013501 -9770052 - AluSx SINE Alu -2 310 1 869 72 43 36 chr11 141013501 141013639 -9769914 - MER30 DNA MER1_type -91 139 1 631 122 20 0 chr11 141013645 141013743 -9769810 + LTR49 LTR ERV1 492 591 -4 387 0 0 0 chr11 141013768 141013811 -9769742 + (TG)n Simple_repeat Simple_repeat 1 43 0 180 368 172 12 chr11 141013876 141014039 -9769514 + MIR SINE MIR 1 189 -73 202 261 0 22 chr11 141014051 141014097 -9769456 + L2 LINE L2 3210 3254 -18 2385 61 0 3 chr11 141014124 141014420 -9769133 + AluY SINE Alu 1 295 -16 541 238 92 12 chr11 141014536 141014731 -9768822 - MIR SINE MIR -58 204 3 1500 201 14 3 chr11 141014907 141015200 -9768353 + AluJo SINE Alu 1 296 -16 253 212 8 16 chr11 141015536 141015631 -9767922 + GA-rich Low_complexity Low_complexity 1 95 -412 1606 183 42 65 chr11 141015631 141016014 -9767539 - MLT1A2 LTR MaLR 0 374 1 253 212 8 16 chr11 141016014 141016048 -9767505 + GA-rich Low_complexity Low_complexity 95 507 0 2254 99 3 3 chr11 141016287 141016599 -9766954 + AluSx SINE Alu 1 312 0 339 338 64 25 chr11 141016892 141017096 -9766457 - L2 LINE L2 -866 2448 2237 553 371 26 4 chr11 141017263 141017492 -9766061 - L3 LINE CR1 -399 1178 945 1318 239 115 14 chr11 141017519 141017937 -9765616 - MLT1C LTR MaLR -4 463 4 226 265 0 41 chr11 141018200 141018298 -9765255 + (TCTCTG)n Simple_repeat Simple_repeat 2 95 0 233 324 0 0 chr11 141018302 141018373 -9765180 + (CA)n Simple_repeat Simple_repeat 1 71 0 2446 59 3 0 chr11 141018701 141019007 -9764546 - AluY SINE Alu -4 307 1 34 0 0 0 chr11 141019013 141019047 -9764506 + AT_rich Low_complexity Low_complexity 1 34 0 198 0 0 0 chr11 141019310 141019332 -9764221 + (CA)n Simple_repeat Simple_repeat 2 23 0 501 317 135 28 chr11 141019364 141019727 -9763826 + L2 LINE L2 2460 2861 -453 1096 146 0 22 chr11 141019733 141019918 -9763635 - AluSg/x SINE Alu 0 310 130 575 318 134 25 chr11 141019977 141020164 -9763389 + L2 LINE L2 2912 3077 -236 1457 136 34 90 chr11 141020164 141020487 -9763066 + AluJb SINE Alu 2 306 -6 575 318 134 25 chr11 141020487 141020658 -9762895 + L2 LINE L2 3077 3309 -4 2265 97 0 7 chr11 141020958 141021268 -9762285 + AluSq SINE Alu 1 308 -5 713 137 29 23 chr11 141021284 141021459 -9762094 + GA-rich Low_complexity Low_complexity 4 179 0 1801 134 16 22 chr11 141022517 141022831 -9760722 + AluJo SINE Alu 1 312 0 2233 100 13 0 chr11 141022888 141023197 -9760356 + AluSp SINE Alu 1 313 0 2308 90 0 3 chr11 141023311 141023623 -9759930 + AluY SINE Alu 1 311 0 1021 177 16 0 chr11 141023899 141024085 -9759468 - MER5A DNA MER1_type 0 189 1 498 242 175 38 chr11 141024163 141024374 -9759179 - MIR SINE MIR 0 262 23 2071 104 0 0 chr11 141024445 141024756 -9758797 - AluSx SINE Alu 0 312 1 195 152 0 0 chr11 141025274 141025320 -9758233 + (TG)n Simple_repeat Simple_repeat 1 46 0 262 363 58 40 chr11 141025713 141026038 -9757515 + L2 LINE L2 2623 2953 -361 192 255 64 0 chr11 141030172 141030219 -9753334 + L2 LINE L2 3264 3313 0 386 291 128 0 chr11 141030339 141030487 -9753066 - MIR SINE MIR -92 170 4 1445 239 86 61 chr11 141030737 141031260 -9752293 + MLT1H LTR MaLR 1 536 -13 768 175 0 29 chr11 141031366 141031503 -9752050 + FLAM_C SINE Alu 2 134 -9 1103 174 14 28 chr11 141031519 141031731 -9751822 - MER20 DNA MER1_type 0 219 11 2307 82 3 13 chr11 141032027 141032343 -9751210 + AluSq SINE Alu 1 313 0 1680 173 7 20 chr11 141032738 141032904 -9750649 - AluJo SINE Alu -15 297 130 426 65 0 0 chr11 141032904 141032966 -9750587 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 1990 124 3 0 chr11 141032966 141033248 -9750305 - AluSp SINE Alu -30 283 1 1680 173 7 20 chr11 141033248 141033381 -9750172 - AluJo SINE Alu -180 132 1 374 323 25 38 chr11 141034999 141035157 -9748396 + MER91A DNA MER1_type 2 157 -39 323 216 31 93 chr11 141035165 141035262 -9748291 - L1MC4 LINE L1 -1339 6703 6613 511 153 12 12 chr11 141035282 141035367 -9748186 - FRAM SINE Alu -27 149 65 307 327 44 9 chr11 141035917 141036047 -9747506 + MIR SINE MIR 3 130 -78 1234 148 53 168 chr11 141036149 141036561 -9746992 - MLT1A1 LTR MaLR 0 365 1 1837 160 0 13 chr11 141036860 141037173 -9746380 + AluJb SINE Alu 2 310 -2 286 260 29 10 chr11 141037731 141037835 -9745718 + CT-rich Low_complexity Low_complexity 2 107 0 1710 164 10 10 chr11 141038305 141038604 -9744949 + AluSx SINE Alu 3 301 -11 192 335 91 17 chr11 141038612 141038842 -9744711 + L2 LINE L2 2714 2960 -354 1792 170 0 10 chr11 141039489 141039800 -9743753 - AluJo SINE Alu 0 312 5 259 305 28 99 chr11 141039870 141039890 -9743663 - MIR3 SINE MIR -42 166 146 1967 118 4 0 chr11 141039890 141040194 -9743359 - AluSx SINE Alu 0 305 1 259 305 28 99 chr11 141040194 141040279 -9743274 - MIR3 SINE MIR -62 146 70 1048 200 137 48 chr11 141040279 141040614 -9742939 - MLT1A1 LTR MaLR 0 365 1 259 305 28 99 chr11 141040614 141040647 -9742906 - MIR3 SINE MIR -138 70 36 495 221 48 35 chr11 141041185 141041330 -9742223 + MIR SINE MIR 46 192 -70 214 255 0 0 chr11 141041551 141041598 -9741955 + L3b LINE CR1 1285 1331 -252 242 296 11 57 chr11 141041631 141041719 -9741834 - L2 LINE L2 0 3313 3230 231 189 0 0 chr11 141041777 141041830 -9741723 + CT-rich Low_complexity Low_complexity 3 55 0 265 264 126 0 chr11 141042051 141042134 -9741419 - MLT1L LTR MaLR -374 241 148 693 216 22 7 chr11 141042134 141042273 -9741280 + Charlie1 DNA MER1_type 1 141 -2620 1274 201 86 49 chr11 141042298 141042750 -9740803 + Charlie1 DNA MER1_type 2267 2735 -26 257 272 87 0 chr11 141042866 141042969 -9740584 + L1ME4a LINE L1 6010 6121 0 21 0 0 0 chr11 141043020 141043041 -9740512 + AT_rich Low_complexity Low_complexity 1 21 0 236 317 142 28 chr11 141043113 141043438 -9740115 - L2 LINE L2 -1526 1788 1427 758 160 0 8 chr11 141044278 141044397 -9739156 - FLAM_C SINE Alu -15 118 1 1011 234 33 41 chr11 141044399 141044800 -9738753 - L1MA4 LINE L1 0 6304 5935 1964 94 0 4 chr11 141045514 141045781 -9737772 - AluSg SINE Alu -6 304 39 282 203 72 0 chr11 141045853 141045922 -9737631 - MIR SINE MIR -70 192 119 2751 124 39 0 chr11 141045954 141046364 -9737189 - MSTC LTR MaLR 0 428 3 2531 87 132 5 chr11 141046409 141046789 -9736764 - MSTA LTR MaLR 0 428 1 183 239 196 65 chr11 141046946 141047038 -9736515 + L2 LINE L2 3166 3269 -3 1952 171 36 11 chr11 141047156 141047512 -9736041 - MLT1A1 LTR MaLR 0 365 1 241 262 52 99 chr11 141048018 141048251 -9735302 - L2 LINE L2 -216 3056 2835 2392 83 3 0 chr11 141048571 141048883 -9734670 + AluSp SINE Alu 1 313 0 418 245 29 152 chr11 141048887 141049091 -9734462 + MIR SINE MIR 81 259 -3 269 296 143 15 chr11 141049177 141049340 -9734213 - MIR SINE MIR -57 205 20 314 0 49 0 chr11 141049572 141049613 -9733940 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 929 83 0 0 chr11 141049613 141049734 -9733819 - AluSq/x SINE Alu -192 121 1 206 217 83 17 chr11 141049831 141049891 -9733662 + L2 LINE L2 3155 3218 -54 4356 115 16 13 chr11 141050406 141051039 -9732514 - MER41B LTR ERV1 0 635 1 191 238 0 0 chr11 141051220 141051262 -9732291 - L3b LINE CR1 -210 1373 1332 180 0 0 0 chr11 141051525 141051545 -9732008 + (GA)n Simple_repeat Simple_repeat 2 21 0 1672 125 0 58 chr11 141051715 141051933 -9731620 - AluSx SINE Alu 0 312 114 2265 69 0 13 chr11 141051933 141052239 -9731314 + AluY SINE Alu 2 303 -8 1672 125 0 58 chr11 141052239 141052315 -9731238 - AluSx SINE Alu -198 114 35 1983 132 0 3 chr11 141052325 141052629 -9730924 - AluSx SINE Alu -9 303 1 2152 105 3 13 chr11 141053097 141053411 -9730142 + AluSx SINE Alu 1 311 -1 462 319 43 53 chr11 141053703 141053932 -9729621 + L1MC4a LINE L1 4489 4719 -1427 2177 119 0 3 chr11 141053932 141054243 -9729310 + AluSx SINE Alu 1 310 -2 462 319 43 53 chr11 141054243 141054686 -9728867 + L1MC4a LINE L1 4719 5154 -992 970 233 96 133 chr11 141054793 141055737 -9727816 + L1MC4a LINE L1 5313 6221 -1587 1439 223 18 79 chr11 141055867 141056244 -9727309 - LTR37B LTR ERV1 -2 466 124 747 205 16 79 chr11 141056244 141056322 -9727231 - MER45A DNA AcHobo -1403 178 97 2070 130 0 3 chr11 141056322 141056630 -9726923 + AluSq SINE Alu 1 307 -6 747 205 16 79 chr11 141056630 141056741 -9726812 - MER45A DNA AcHobo -1484 97 1 1439 223 18 79 chr11 141056741 141056856 -9726697 - LTR37B LTR ERV1 -344 124 4 402 242 15 83 chr11 141056870 141057002 -9726551 + MIR SINE MIR 70 192 -70 2301 53 40 7 chr11 141058474 141058774 -9724779 + AluY SINE Alu 1 310 -1 599 221 0 30 chr11 141058796 141058927 -9724626 + FLAM_C SINE Alu 2 128 -5 237 242 76 102 chr11 141059081 141059238 -9724315 + L1MC5 LINE L1 7763 7915 -46 249 262 135 32 chr11 141059669 141059795 -9723758 + MER5B DNA MER1_type 40 178 0 726 94 0 0 chr11 141059904 141060000 -9723553 - AluS SINE Alu -217 96 1 21 0 0 0 chr11 141060163 141060184 -9723369 + AT_rich Low_complexity Low_complexity 1 21 0 1978 139 7 0 chr11 141060681 141060982 -9722571 - AluSx SINE Alu -4 308 6 255 146 0 21 chr11 141060987 141061035 -9722518 + (GA)n Simple_repeat Simple_repeat 2 48 0 280 191 24 24 chr11 141061040 141061124 -9722429 + GA-rich Low_complexity Low_complexity 1 84 0 365 248 51 34 chr11 141061342 141061459 -9722094 - MIR SINE MIR -63 199 81 186 103 0 0 chr11 141061608 141061637 -9721916 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 258 327 69 0 chr11 141062741 141062842 -9720711 + L3b LINE CR1 1352 1459 -124 336 301 98 74 chr11 141062867 141063070 -9720483 - MIR SINE MIR -48 214 7 3436 166 25 62 chr11 141063156 141063215 -9720338 - L1MB3 LINE L1 -3 6180 6120 1809 121 21 0 chr11 141063215 141063497 -9720056 - AluSg SINE Alu -22 288 1 3436 166 25 62 chr11 141063497 141064043 -9719510 - L1MB3 LINE L1 -63 6120 5604 2318 58 3 3 chr11 141064043 141064336 -9719217 + AluSp SINE Alu 1 293 -20 3436 166 25 62 chr11 141064336 141064453 -9719100 - L1MB3 LINE L1 -579 5604 5484 180 77 0 0 chr11 141064458 141064484 -9719069 + (TA)n Simple_repeat Simple_repeat 1 26 0 2065 125 6 10 chr11 141064573 141064886 -9718667 + AluSx SINE Alu 1 312 0 274 191 11 101 chr11 141065750 141065839 -9717714 - MLT1L LTR MaLR -339 276 196 231 254 0 0 chr11 141065806 141065861 -9717692 - MLT1J1 LTR MaLR -321 125 71 * 252 299 77 50 chr11 141066138 141066359 -9717194 - MIR SINE MIR -34 228 2 417 292 75 12 chr11 141066881 141067042 -9716511 + MIR3 SINE MIR 19 189 -19 526 320 41 6 chr11 141067391 141067563 -9715990 + MIR3 SINE MIR 16 193 -15 335 281 161 30 chr11 141067908 141067954 -9715599 - MIR SINE MIR -9 253 214 2017 109 0 3 chr11 141067954 141068247 -9715306 - AluY SINE Alu -1 310 19 335 281 161 30 chr11 141068247 141068399 -9715154 - MIR SINE MIR -48 214 29 266 167 42 0 chr11 141069039 141069087 -9714466 - L2 LINE L2 -12 3260 3211 2039 117 3 3 chr11 141069345 141069645 -9713908 + AluSq SINE Alu 1 300 -13 355 367 124 6 chr11 141069791 141069968 -9713585 + L2 LINE L2 3073 3270 -2 219 36 0 0 chr11 141069987 141070015 -9713538 + (TGGA)n Simple_repeat Simple_repeat 3 30 0 192 326 0 65 chr11 141070158 141070250 -9713303 + MIR SINE MIR 47 132 -130 295 88 228 0 chr11 141071796 141071853 -9711700 + L1MC4 LINE L1 7957 8026 -16 21 0 0 0 chr11 141071856 141071877 -9711676 + AT_rich Low_complexity Low_complexity 1 21 0 1532 170 89 0 chr11 141071954 141072236 -9711317 + AluJo SINE Alu 1 307 -5 35 24 0 0 chr11 141072364 141072406 -9711147 + AT_rich Low_complexity Low_complexity 1 42 0 212 250 0 19 chr11 141072430 141072482 -9711071 + MIR SINE MIR 84 134 -128 220 346 37 0 chr11 141072669 141072750 -9710803 + L2 LINE L2 3228 3311 -2 275 290 28 19 chr11 141072803 141072910 -9710643 + MIR SINE MIR 44 151 -57 281 204 21 84 chr11 141073770 141073961 -9709592 + GA-rich Low_complexity Low_complexity 1 179 0 224 130 22 0 chr11 141074177 141074223 -9709330 + GA-rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr11 141074434 141074462 -9709091 + GC_rich Low_complexity Low_complexity 1 28 0 207 304 0 18 chr11 141075135 141075191 -9708362 + polypurine Low_complexity Low_complexity 60 114 0 356 344 51 6 chr11 141075617 141075774 -9707779 + MIR3 SINE MIR 19 182 -26 665 249 5 88 chr11 141076172 141076377 -9707176 - MIR SINE MIR -44 218 31 424 353 15 96 chr11 141077324 141077729 -9705824 + L2 LINE L2 2851 3222 -50 189 327 0 0 chr11 141078321 141078376 -9705177 - MIR3 SINE MIR -6 202 148 385 271 90 33 chr11 141078533 141078655 -9704898 - MIR3 SINE MIR -46 162 34 441 305 89 26 chr11 141078934 141079124 -9704429 + MIR3 SINE MIR 7 208 0 2047 116 23 3 chr11 141079506 141079809 -9703744 - AluSx SINE Alu -3 309 1 537 250 29 72 chr11 141080027 141080235 -9703318 - MIR SINE MIR -51 211 13 510 125 0 0 chr11 141081047 141081127 -9702426 + (GGA)n Simple_repeat Simple_repeat 2 81 0 236 358 44 44 chr11 141081316 141081453 -9702100 - L2 LINE L2 -15 3257 3121 589 301 66 14 chr11 141082307 141082520 -9701033 + MIR SINE MIR 39 262 0 2017 110 7 17 chr11 141082714 141083013 -9700540 + AluSx SINE Alu 1 296 -16 449 293 52 23 chr11 141083239 141083413 -9700140 - MIR SINE MIR -5 257 79 189 0 0 0 chr11 141084126 141084147 -9699406 + (TC)n Simple_repeat Simple_repeat 1 21 0 209 200 0 0 chr11 141084702 141084742 -9698811 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 25 0 0 68 chr11 141085121 141085140 -9698413 + AT_rich Low_complexity Low_complexity 1 20 -21 2021 94 14 3 chr11 141085140 141085426 -9698127 + AluSx SINE Alu 1 289 -23 25 0 0 68 chr11 141085426 141085450 -9698103 + AT_rich Low_complexity Low_complexity 20 41 0 545 277 95 12 chr11 141085460 141085661 -9697892 - MIR SINE MIR -48 214 1 409 219 26 61 chr11 141085853 141085967 -9697586 + MER81 DNA DNA 5 114 0 2133 121 7 0 chr11 141086004 141086309 -9697244 + AluSx SINE Alu 1 307 -5 445 204 0 32 chr11 141086309 141086402 -9697151 + MER5A DNA MER1_type 17 106 -83 582 268 83 53 chr11 141088617 141088919 -9694634 + L2 LINE L2 2834 3144 -169 1721 142 139 6 chr11 141088949 141089266 -9694287 - MLT1A1 LTR MaLR 0 365 7 247 294 33 98 chr11 141089297 141089389 -9694164 + L2 LINE L2 3203 3288 -25 * 401 258 11 11 chr11 141089373 141089462 -9694091 - MIR SINE MIR -143 119 31 352 234 117 0 chr11 141089552 141089629 -9693924 - MER5A DNA MER1_type -83 106 21 385 264 9 27 chr11 141089667 141089777 -9693776 - MIR SINE MIR -80 128 21 426 283 132 15 chr11 141090157 141090362 -9693191 - L3 LINE CR1 -22 1555 1327 803 144 0 8 chr11 141090448 141090573 -9692980 + FLAM_C SINE Alu 1 124 -9 462 263 78 39 chr11 141090573 141090752 -9692801 - MIR SINE MIR -12 250 65 432 240 184 29 chr11 141090906 141091098 -9692455 - MIR SINE MIR 0 262 42 1991 103 3 38 chr11 141091372 141091692 -9691861 + AluSx SINE Alu 3 311 -1 457 181 58 29 chr11 141091695 141091833 -9691720 - L1MA10 LINE L1 -7 6327 6186 236 171 0 0 chr11 141091846 141091881 -9691672 + Alu SINE Alu 1 35 -268 212 364 78 45 chr11 141092390 141092632 -9690921 + L2 LINE L2 3064 3313 0 241 311 40 0 chr11 141093413 141093487 -9690066 - MIR SINE MIR -3 259 183 1062 212 54 47 chr11 141093912 141094013 -9689540 + AluJo SINE Alu 1 100 -212 1724 124 81 73 chr11 141094013 141094385 -9689168 + THE1C LTR MaLR 1 375 0 1062 212 54 47 chr11 141094385 141094580 -9688973 + AluJo SINE Alu 100 299 -13 1759 164 3 28 chr11 141095417 141095735 -9687818 - AluJb SINE Alu -2 310 1 430 229 36 0 chr11 141095789 141095872 -9687681 + MIR SINE MIR 67 152 -110 329 174 58 0 chr11 141095871 141095940 -9687613 - MIR SINE MIR -115 147 75 * 373 284 31 31 chr11 141096585 141096747 -9686806 + L1ME4a LINE L1 5524 5685 -436 1649 178 0 13 chr11 141096749 141097063 -9686490 + AluJb SINE Alu 1 310 -2 1555 103 0 0 chr11 141097124 141097337 -9686216 + AluY SINE Alu 1 213 -98 287 128 0 0 chr11 141097338 141097385 -9686168 + AluY SINE Alu 254 300 -1 636 229 161 35 chr11 141097385 141097695 -9685858 + L1ME4a LINE L1 5759 6107 -14 2171 109 3 3 chr11 141097791 141098102 -9685451 + AluSx SINE Alu 1 311 -1 619 308 36 90 chr11 141098291 141098648 -9684905 + L2 LINE L2 2890 3227 -45 303 331 166 45 chr11 141098653 141098794 -9684759 + L3b LINE CR1 1174 1297 -286 2003 121 0 3 chr11 141098794 141099092 -9684461 + AluSx SINE Alu 1 297 -15 303 331 166 45 chr11 141099092 141099156 -9684397 + L3b LINE CR1 1297 1352 -231 3816 141 74 59 chr11 141099156 141099923 -9683630 + MER4E LTR ERV1 1 779 0 303 331 166 45 chr11 141099923 141100048 -9683505 + L3b LINE CR1 1352 1545 -38 270 0 0 0 chr11 141101548 141101578 -9681975 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 202 259 35 0 chr11 141101734 141101792 -9681761 - L3 LINE CR1 -2 1575 1516 2354 85 0 0 chr11 141101950 141102256 -9681297 + AluY SINE Alu 1 306 -5 286 218 50 69 chr11 141102296 141102397 -9681156 + MIR SINE MIR 88 186 -76 255 316 0 26 chr11 141102402 141102478 -9681075 - MIR SINE MIR 0 262 189 1594 133 8 0 chr11 141102600 141102848 -9680705 - L1MA6 LINE L1 0 6300 6051 250 362 32 10 chr11 141104152 141104273 -9679280 - MIR SINE MIR -75 133 28 1923 154 0 0 chr11 141104931 141105236 -9678317 + AluSx SINE Alu 1 305 -7 183 336 82 33 chr11 141105562 141105684 -9677869 - MIR SINE MIR -100 162 35 451 144 93 21 chr11 141105917 141106014 -9677539 - MER5A DNA MER1_type -77 112 9 284 371 56 37 chr11 141106075 141106398 -9677155 + L2 LINE L2 2569 2897 -417 1703 156 0 28 chr11 141106600 141106921 -9676632 - AluJb SINE Alu 0 312 1 217 162 0 0 chr11 141107210 141107247 -9676306 + L2 LINE L2 3236 3272 0 267 339 23 23 chr11 141107522 141107615 -9675938 + MER5B DNA MER1_type 1 96 -82 512 207 148 35 chr11 141107615 141107784 -9675769 - MER5A DNA MER1_type -1 188 1 267 339 23 23 chr11 141107784 141107820 -9675733 + MER5B DNA MER1_type 95 130 -48 1575 178 3 29 chr11 141107832 141108147 -9675406 - AluJb SINE Alu -2 310 4 2236 98 0 0 chr11 141108540 141108835 -9674718 - AluSx SINE Alu -13 299 5 2243 100 0 3 chr11 141109230 141109539 -9674014 - AluSx SINE Alu -4 308 1 250 152 0 22 chr11 141110527 141110573 -9672980 + L2 LINE L2 3205 3249 -23 580 315 38 25 chr11 141110599 141110837 -9672716 - MIR SINE MIR -4 258 18 1047 98 38 54 chr11 141111786 141111970 -9671583 - AluSq SINE Alu -3 310 130 1923 124 7 0 chr11 141111975 141112258 -9671295 - AluSp SINE Alu -23 290 6 230 325 24 24 chr11 141112262 141112345 -9671208 + MIR3 SINE MIR 119 201 -7 1082 202 34 19 chr11 141112967 141113175 -9670378 - MLT1F LTR MaLR -3 564 354 1324 209 62 78 chr11 141113186 141113559 -9669994 - MLT1A2 LTR MaLR -7 367 1 1588 196 77 10 chr11 141113559 141113871 -9669682 - MLT1F LTR MaLR -209 333 1 245 264 132 38 chr11 141113952 141114058 -9669495 + MIR SINE MIR 77 192 -70 190 203 14 149 chr11 141114203 141114245 -9669308 - MIR3 SINE MIR -1 207 178 1732 167 0 7 chr11 141114245 141114539 -9669014 + AluJo SINE Alu 1 292 -20 190 203 14 149 chr11 141114539 141114570 -9668983 - MIR3 SINE MIR -30 178 144 341 337 0 20 chr11 141114804 141114905 -9668648 - MIR SINE MIR -86 122 24 1770 157 0 10 chr11 141115550 141115862 -9667691 + AluJb SINE Alu 1 309 -3 1000 122 0 0 chr11 141116815 141116954 -9666599 - MLT1B LTR MaLR -12 378 240 2095 92 0 7 chr11 141116958 141117294 -9666259 - AluSc SINE Alu 0 334 1 328 347 18 47 chr11 141117903 141118073 -9665480 + L2 LINE L2 3149 3313 0 1823 135 49 0 chr11 141118533 141118821 -9664732 + AluSx SINE Alu 1 302 -10 1218 56 0 17 chr11 141118892 141119071 -9664482 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 456 77 0 0 chr11 141119071 141119136 -9664417 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 296 24 0 24 chr11 141119305 141119347 -9664206 + (TG)n Simple_repeat Simple_repeat 2 42 0 1885 142 23 0 chr11 141119433 141119768 -9663785 + AluSx SINE Alu 3 344 0 812 277 166 28 chr11 141119827 141120152 -9663401 + MLT1K LTR MaLR 133 502 -86 828 215 17 11 chr11 141120158 141120335 -9663218 - MLT1C LTR MaLR 0 467 290 211 320 20 50 chr11 141121230 141121330 -9662223 + MIR SINE MIR 1 97 -165 * 824 280 62 9 chr11 141121329 141121554 -9661999 - MIR SINE MIR -1 261 25 918 188 12 0 chr11 141121559 141121719 -9661834 + FRAM SINE Alu 1 162 -4 737 326 202 38 chr11 141121763 141121959 -9661594 - L2 LINE L2 0 3272 3110 798 175 0 0 chr11 141121959 141122085 -9661468 + FLAM_C SINE Alu 2 127 -6 737 326 202 38 chr11 141122085 141122974 -9660579 - L2 LINE L2 -162 3110 1983 185 326 147 0 chr11 141123015 141123110 -9660443 + L2 LINE L2 3128 3236 -36 441 255 57 0 chr11 141123124 141123230 -9660323 - MIR SINE MIR 0 262 151 298 191 0 9 chr11 141123240 141123301 -9660252 - Alu SINE Alu -255 45 1 332 258 135 11 chr11 141123394 141123483 -9660070 + MIR SINE MIR 58 157 -105 2083 113 0 6 chr11 141123772 141124083 -9659470 + AluSx SINE Alu 1 309 -3 1398 158 42 7 chr11 141124306 141124590 -9658963 - MER33 DNA MER1_type -11 313 20 2132 91 7 0 chr11 141124867 141125154 -9658399 + AluSp SINE Alu 2 290 -23 229 237 85 0 chr11 141125163 141125222 -9658331 - L2 LINE L2 -14 3299 3236 997 238 60 52 chr11 141125283 141125423 -9658130 - MLT1E LTR MaLR 0 593 449 2030 150 0 17 chr11 141125423 141125723 -9657830 + AluSx SINE Alu 2 296 -16 997 238 60 52 chr11 141125723 141125851 -9657702 - MLT1E LTR MaLR -144 449 323 759 259 70 37 chr11 141125864 141126163 -9657390 - MLT1E LTR MaLR -173 453 103 2847 13 3 0 chr11 141126610 141126918 -9656635 + AluYb8 SINE Alu 1 309 -9 2044 140 7 3 chr11 141127250 141127550 -9656003 + AluJb SINE Alu 1 301 -11 27 29 0 0 chr11 141127763 141127797 -9655756 + AT_rich Low_complexity Low_complexity 1 34 0 892 198 8 122 chr11 141127916 141128014 -9655539 + MER20 DNA MER1_type 1 108 -111 2014 166 47 40 chr11 141128014 141128052 -9655501 - MSTB LTR MaLR 0 426 390 2703 52 0 0 chr11 141128052 141128362 -9655191 + AluY SINE Alu 1 310 -1 2014 166 47 40 chr11 141128362 141128745 -9654808 - MSTB LTR MaLR -36 390 2 892 198 8 122 chr11 141128745 141128893 -9654660 + MER20 DNA MER1_type 108 219 0 2017 107 33 0 chr11 141129651 141129991 -9653562 - AluSg SINE Alu 0 349 1 479 235 77 55 chr11 141130007 141130190 -9653363 - MIR3 SINE MIR -6 202 16 1252 213 29 52 chr11 141130320 141130582 -9652971 - MER58B DNA MER1_type -2079 341 86 2147 118 0 7 chr11 141130582 141130871 -9652682 + AluSx SINE Alu 3 289 -23 1252 213 29 52 chr11 141130871 141130918 -9652635 - MER58B DNA MER1_type -2334 86 39 23 0 0 0 chr11 141131560 141131583 -9651970 + AT_rich Low_complexity Low_complexity 1 23 0 1919 14 0 0 chr11 141132187 141132394 -9651159 + AluY SINE Alu 105 311 0 2212 109 3 3 chr11 141132672 141132975 -9650578 + AluSx SINE Alu 5 307 -5 218 245 0 0 chr11 141133071 141133120 -9650433 + G-rich Low_complexity Low_complexity 1 49 0 2323 111 0 0 chr11 141134260 141134558 -9648995 - AluSx SINE Alu -14 298 1 2126 115 14 17 chr11 141134715 141135011 -9648542 - AluSx SINE Alu -17 295 1 239 91 127 0 chr11 141135112 141135167 -9648386 - MER31A LTR ERV1 0 485 424 1026 205 102 54 chr11 141135172 141135265 -9648288 - MER39 LTR ERV1 0 647 560 2227 98 7 0 chr11 141135265 141135550 -9648003 - AluSx SINE Alu -17 295 9 1026 205 102 54 chr11 141135550 141135936 -9647617 - MER39 LTR ERV1 -87 560 1 1042 257 93 8 chr11 141135940 141136290 -9647263 - MER31B LTR ERV1 -79 406 14 1803 151 43 7 chr11 141136468 141136767 -9646786 + AluSx SINE Alu 1 310 -2 2355 111 0 0 chr11 141136777 141137084 -9646469 + AluSx SINE Alu 1 307 -5 201 255 20 0 chr11 141137273 141137324 -9646229 + MER91A DNA MER1_type 91 142 -54 2399 112 0 0 chr11 141137620 141137933 -9645620 + AluSq SINE Alu 1 313 0 2482 96 0 0 chr11 141138393 141138705 -9644848 + AluSx SINE Alu 1 312 0 298 170 0 0 chr11 141139691 141139738 -9643815 + MIR SINE MIR 36 82 -126 300 84 84 24 chr11 141139808 141139974 -9643579 + (TA)n Simple_repeat Simple_repeat 1 176 0 26 98 0 0 chr11 141139974 141140056 -9643497 + AT_rich Low_complexity Low_complexity 1 82 0 291 137 58 14 chr11 141140057 141140196 -9643357 + (TTATA)n Simple_repeat Simple_repeat 5 149 0 1981 110 14 31 chr11 141140205 141140495 -9643058 - AluSq SINE Alu -28 285 1 577 307 20 10 chr11 141140506 141140708 -9642845 + MIR SINE MIR 18 221 -41 1714 155 65 0 chr11 141140861 141141138 -9642415 - AluJo SINE Alu -15 297 3 1084 206 58 65 chr11 141141300 141141482 -9642071 - L1M4 LINE L1 -2191 3955 3773 2303 90 10 7 chr11 141141482 141141781 -9641772 - AluSx SINE Alu -12 300 1 1084 206 58 65 chr11 141141781 141141995 -9641558 - L1M4 LINE L1 -2373 3773 3562 2384 116 0 0 chr11 141142114 141142425 -9641128 + AluSx SINE Alu 1 311 -1 25 75 0 0 chr11 141142502 141142555 -9640998 + AT_rich Low_complexity Low_complexity 1 53 0 2393 93 0 0 chr11 141142618 141142920 -9640633 - AluY SINE Alu -9 302 1 676 184 8 8 chr11 141142980 141143105 -9640448 + FLAM_C SINE Alu 3 127 -16 209 208 0 0 chr11 141143112 141143160 -9640393 + (TTAA)n Simple_repeat Simple_repeat 4 51 0 2427 89 0 6 chr11 141143630 141143943 -9639610 + AluSx SINE Alu 1 311 -1 290 44 0 44 chr11 141143951 141143996 -9639557 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 423 98 0 0 chr11 141144183 141144244 -9639309 + (A)n Simple_repeat Simple_repeat 1 61 0 206 292 208 63 chr11 141144512 141144796 -9638757 - L2 LINE L2 -1 3312 2988 404 274 32 8 chr11 141144797 141144921 -9638632 + MIR SINE MIR 129 255 -7 224 54 0 27 chr11 141144940 141144959 -9638594 + (ATG)n Simple_repeat Simple_repeat 1 20 -16 2264 118 0 0 chr11 141144959 141145255 -9638298 + AluSx SINE Alu 1 296 -16 224 54 0 27 chr11 141145255 141145272 -9638281 + (ATG)n Simple_repeat Simple_repeat 20 36 0 2315 102 0 0 chr11 141146224 141146518 -9637035 + AluSq SINE Alu 1 294 -19 314 323 0 0 chr11 141146640 141146739 -9636814 + L1ME LINE L1 5547 5645 -476 503 293 40 55 chr11 141146742 141146995 -9636558 + MIR SINE MIR 14 262 0 235 217 33 0 chr11 141147231 141147291 -9636262 + (TA)n Simple_repeat Simple_repeat 1 62 0 22 56 0 0 chr11 141147343 141147379 -9636174 + AT_rich Low_complexity Low_complexity 1 36 0 1484 149 33 8 chr11 141147398 141147639 -9635914 + AluJb SINE Alu 42 288 -24 215 244 44 0 chr11 141147900 141147945 -9635608 - L2 LINE L2 -14 3258 3212 2547 61 0 0 chr11 141148003 141148299 -9635254 + AluY SINE Alu 2 297 -14 216 267 29 67 chr11 141148436 141148541 -9635012 - MIR3 SINE MIR -93 115 15 351 44 15 59 chr11 141149043 141149111 -9634442 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 250 278 78 0 chr11 141150006 141150096 -9633457 - MIR SINE MIR -119 143 47 205 308 68 17 chr11 141151425 141151542 -9632011 + L2 LINE L2 3191 3313 0 367 236 104 9 chr11 141152329 141152435 -9631118 + L2 LINE L2 3198 3313 0 180 309 43 50 chr11 141152433 141152572 -9630981 + L3b LINE CR1 1348 1485 -98 * 335 290 103 19 chr11 141152574 141152729 -9630824 - MIR3 SINE MIR -7 201 34 2265 103 0 0 chr11 141152754 141153046 -9630507 + AluSg SINE Alu 1 292 -18 1325 107 269 8 chr11 141153055 141153289 -9630264 + AluSg1 SINE Alu 1 295 -14 318 229 68 107 chr11 141153303 141153508 -9630045 + MER112 DNA MER1_type 17 213 -47 282 56 0 0 chr11 141154085 141154121 -9629432 + (CA)n Simple_repeat Simple_repeat 1 36 0 207 69 0 0 chr11 141154199 141154228 -9629325 + (TC)n Simple_repeat Simple_repeat 2 30 0 338 291 51 0 chr11 141154680 141154797 -9628756 + MIR3 SINE MIR 34 156 -52 1248 288 33 33 chr11 141154841 141155382 -9628171 + L1MC5 LINE L1 6991 7531 -430 2289 100 0 28 chr11 141155462 141155783 -9627770 + AluSx SINE Alu 1 312 0 2194 104 0 7 chr11 141155813 141156163 -9627390 - AluSq SINE Alu 0 348 1 1148 48 0 14 chr11 141156333 141156478 -9627075 - L1P3 LINE L1 -483 5671 5529 26 0 0 0 chr11 141156479 141156505 -9627048 + AT_rich Low_complexity Low_complexity 1 26 0 411 352 61 5 chr11 141156670 141156883 -9626670 + MIR SINE MIR 36 260 -2 2024 97 0 4 chr11 141156989 141157248 -9626305 + AluSx SINE Alu 1 258 -54 1224 133 4 104 chr11 141157377 141157618 -9625935 - AluJb SINE Alu -9 303 87 548 263 26 0 chr11 141158133 141158289 -9625264 + MIR SINE MIR 78 237 -25 393 364 14 0 chr11 141158295 141158438 -9625115 + MIR SINE MIR 21 165 -97 4891 174 48 42 chr11 141158439 141158513 -9625040 + L1MA10 LINE L1 5166 5238 -1096 1803 183 38 41 chr11 141158513 141158809 -9624744 + MLT1A1 LTR MaLR 1 297 -68 2183 136 0 0 chr11 141158809 141159111 -9624442 - AluSq SINE Alu -11 302 1 1803 183 38 41 chr11 141159111 141159180 -9624373 + MLT1A1 LTR MaLR 297 365 0 4891 174 48 42 chr11 141159180 141159410 -9624143 + L1MA10 LINE L1 5238 5465 -869 1883 118 0 37 chr11 141159410 141159702 -9623851 + AluSx SINE Alu 25 312 0 4891 174 48 42 chr11 141159702 141160554 -9622999 + L1MA10 LINE L1 5465 6327 -7 2749 221 67 46 chr11 141160577 141160788 -9622765 + L1ME1 LINE L1 5350 5555 -779 892 179 264 48 chr11 141160788 141161140 -9622413 + MSTC LTR MaLR 1 428 0 2749 221 67 46 chr11 141161140 141161497 -9622056 + L1ME1 LINE L1 5555 5903 -431 1810 131 35 25 chr11 141161497 141161779 -9621774 + AluJo SINE Alu 1 285 -27 2749 221 67 46 chr11 141161779 141161851 -9621702 + L1ME1 LINE L1 5903 5972 -362 2072 107 13 23 chr11 141161851 141162184 -9621369 - AluSx SINE Alu 0 312 1 2749 221 67 46 chr11 141162184 141162353 -9621200 + L1ME1 LINE L1 5972 6334 0 2385 115 0 0 chr11 141162730 141163042 -9620511 + AluSq SINE Alu 1 312 -1 252 143 0 0 chr11 141163093 141163135 -9620418 + (A)n Simple_repeat Simple_repeat 1 42 0 898 237 0 0 chr11 141163520 141163697 -9619856 - MER5B DNA MER1_type 0 178 2 207 0 0 0 chr11 141163824 141163847 -9619706 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1222 192 46 122 chr11 141164228 141164623 -9618930 + MLT1A1 LTR MaLR 1 365 0 225 214 36 0 chr11 141164728 141164784 -9618769 + GA-rich Low_complexity Low_complexity 4 61 0 218 295 84 30 chr11 141164831 141164997 -9618556 - L2 LINE L2 -235 3037 2863 549 256 15 15 chr11 141165098 141165231 -9618322 - MER94 DNA DNA -1 133 1 1651 241 50 61 chr11 141165452 141165992 -9617561 + MLT1F LTR MaLR 1 534 -8 403 293 20 7 chr11 141166070 141166217 -9617336 + MIR3 SINE MIR 60 208 0 440 295 68 21 chr11 141166272 141166462 -9617091 + L3 LINE CR1 613 811 -766 203 289 0 0 chr11 141166617 141166662 -9616891 - L2 LINE L2 -42 3230 3186 219 344 16 0 chr11 141166901 141167026 -9616527 - L2 LINE L2 -1152 2162 2036 936 316 67 18 chr11 141167029 141167542 -9616011 + L2 LINE L2 2772 3312 -1 2213 100 4 0 chr11 141167550 141167860 -9615693 + AluSx SINE Alu 1 311 0 354 301 100 47 chr11 141168019 141168471 -9615082 - L2 LINE L2 -1842 1472 997 224 200 0 0 chr11 141169102 141169147 -9614406 + L3b LINE CR1 1528 1572 -11 3073 136 11 88 chr11 141169209 141169249 -9614304 - L1MC3 LINE L1 -15 7770 7729 1923 134 0 38 chr11 141169249 141169541 -9614012 + AluSx SINE Alu 1 281 -31 3073 136 11 88 chr11 141169541 141169907 -9613646 - L1MC3 LINE L1 -56 7729 7336 2287 101 0 0 chr11 141169907 141170203 -9613350 - AluY SINE Alu -15 296 1 3073 136 11 88 chr11 141170203 141170370 -9613183 - L1MC3 LINE L1 -449 7336 7247 1494 160 20 105 chr11 141170370 141170588 -9612965 - MLT1A1 LTR MaLR 0 365 194 1912 131 0 34 chr11 141170588 141170915 -9612638 - AluJb SINE Alu 0 317 1 1494 160 20 105 chr11 141170915 141171094 -9612459 - MLT1A1 LTR MaLR -171 194 1 3073 136 11 88 chr11 141171094 141171156 -9612397 - L1MC3 LINE L1 -538 7247 7182 1594 140 50 37 chr11 141171167 141171467 -9612086 - AluSp SINE Alu -9 304 1 2243 84 3 7 chr11 141171468 141171766 -9611787 - AluSx SINE Alu -7 305 9 203 233 0 0 chr11 141172157 141172200 -9611353 + C-rich Low_complexity Low_complexity 3 45 0 461 258 36 42 chr11 141172444 141172611 -9610942 - MIR SINE MIR 0 262 97 2155 129 3 0 chr11 141173262 141173557 -9609996 + AluSx SINE Alu 3 298 -14 2177 89 0 74 chr11 141174056 141174382 -9609171 + AluSq SINE Alu 1 302 -11 723 186 86 0 chr11 141174496 141174636 -9608917 + FAM SINE Alu 1 152 -33 351 78 0 0 chr11 141174660 141174711 -9608842 + (TG)n Simple_repeat Simple_repeat 1 51 0 2289 111 0 0 chr11 141174932 141175239 -9608314 + AluSx SINE Alu 1 307 -5 2072 141 3 0 chr11 141175491 141175782 -9607771 + AluSx SINE Alu 1 292 -20 280 336 30 45 chr11 141175806 141175940 -9607613 + MIR3 SINE MIR 15 146 -62 215 161 18 0 chr11 141176349 141176405 -9607148 + (TTTG)n Simple_repeat Simple_repeat 4 60 0 690 164 20 33 chr11 141176766 141176918 -9606635 - L1MB8 LINE L1 -1 6177 6028 198 0 0 0 chr11 141176922 141176944 -9606609 + (T)n Simple_repeat Simple_repeat 1 22 0 1941 163 34 3 chr11 141177506 141177563 -9605990 - MER47B DNA MER2_type -1905 418 364 2279 103 0 3 chr11 141177563 141177865 -9605688 + AluSx SINE Alu 12 312 0 1941 163 34 3 chr11 141177865 141178132 -9605421 - MER47B DNA MER2_type -1959 364 84 2038 133 3 3 chr11 141178612 141178906 -9604647 - AluSx SINE Alu -18 294 1 454 339 61 0 chr11 141178936 141179116 -9604437 - MIR SINE MIR -71 191 1 2165 136 0 0 chr11 141179740 141180041 -9603512 - AluSx SINE Alu -11 301 1 654 209 0 23 chr11 141180261 141180390 -9603163 - FLAM_C SINE Alu -6 127 2 745 260 19 19 chr11 141180554 141180762 -9602791 - MIR SINE MIR -3 259 52 258 207 0 0 chr11 141180869 141180927 -9602626 + CT-rich Low_complexity Low_complexity 2 59 0 411 275 42 0 chr11 141182997 141183117 -9600436 + MIR SINE MIR 49 173 -89 1396 230 63 29 chr11 141183153 141183531 -9600022 - MSTD LTR MaLR -2 394 4 2015 139 10 0 chr11 141183750 141184044 -9599509 - AluSq SINE Alu -16 297 1 242 114 0 0 chr11 141184268 141184303 -9599250 + MIR SINE MIR 113 147 -61 180 125 0 0 chr11 141186122 141186154 -9597399 + (TC)n Simple_repeat Simple_repeat 2 33 0 253 316 52 22 chr11 141186866 141187002 -9596551 + MIR SINE MIR 11 150 -112 552 105 13 0 chr11 141187607 141187683 -9595870 + AluJb SINE Alu 113 189 -123 198 0 0 0 chr11 141187763 141187785 -9595768 + (T)n Simple_repeat Simple_repeat 1 22 0 204 226 0 0 chr11 141188000 141188062 -9595491 + G-rich Low_complexity Low_complexity 1 62 0 234 136 0 0 chr11 141188178 141188222 -9595331 + (G)n Simple_repeat Simple_repeat 1 44 0 237 288 7 72 chr11 141188236 141188375 -9595178 + G-rich Low_complexity Low_complexity 3 132 0 808 208 7 0 chr11 141188433 141188597 -9594956 + AluJb SINE Alu 137 301 0 1562 198 13 44 chr11 141189038 141189356 -9594197 - AluJb SINE Alu -4 308 1 195 313 0 25 chr11 141189369 141189449 -9594104 + L2 LINE L2 3234 3311 -2 300 204 183 21 chr11 141189579 141189721 -9593832 - L1ME4a LINE L1 -1 6120 5956 207 363 18 18 chr11 141189978 141190149 -9593404 + CT-rich Low_complexity Low_complexity 5 175 0 * 228 368 0 31 chr11 141190057 141190220 -9593333 + C-rich Low_complexity Low_complexity 3 160 0 198 0 0 0 chr11 141191164 141191186 -9592367 + (GAAA)n Simple_repeat Simple_repeat 2 23 0 782 218 6 24 chr11 141191846 141192016 -9591537 - AluJo SINE Alu -137 175 9 861 195 0 30 chr11 141192102 141192266 -9591287 - FRAM SINE Alu -18 158 1 409 209 78 8 chr11 141192287 141192416 -9591137 + L1MB5 LINE L1 5801 5938 -246 2463 173 39 28 chr11 141192971 141193434 -9590119 - MER67C LTR ERV1 -240 470 3 311 327 39 10 chr11 141193457 141193561 -9589992 - MER69 DNA AcHobo -752 474 368 2274 84 148 54 chr11 141193760 141193974 -9589579 - MSTA LTR MaLR 0 428 236 1382 176 0 36 chr11 141193974 141194281 -9589272 - AluSx SINE Alu -16 296 1 2274 84 148 54 chr11 141194281 141194457 -9589096 - MSTA LTR MaLR -192 236 1 2212 103 0 10 chr11 141195220 141195531 -9588022 - AluY SINE Alu -3 308 1 3629 160 15 26 chr11 141195532 141196189 -9587364 + L1PA15 LINE L1 5516 6165 0 333 323 48 83 chr11 141197084 141197285 -9586268 + L2 LINE L2 2550 2756 -516 1712 158 0 56 chr11 141197285 141197631 -9585922 - AluJb SINE Alu 0 329 1 333 323 48 83 chr11 141197631 141197856 -9585697 + L2 LINE L2 2756 2960 -312 1019 181 60 164 chr11 141197856 141198374 -9585179 + MER4C LTR ERV1 2 465 0 333 323 48 83 chr11 141198374 141198470 -9585083 + L2 LINE L2 2960 3058 -214 31 26 0 0 chr11 141198550 141198588 -9584965 + AT_rich Low_complexity Low_complexity 1 38 0 287 330 10 0 chr11 141198681 141198784 -9584769 + L2 LINE L2 3167 3270 -2 30 0 0 0 chr11 141199145 141199175 -9584378 + AT_rich Low_complexity Low_complexity 1 30 0 660 296 160 18 chr11 141199284 141199836 -9583717 + L1MC4a LINE L1 5259 5825 -345 2314 95 0 3 chr11 141200033 141200328 -9583225 + AluSc SINE Alu 1 294 -15 2643 148 18 25 chr11 141200346 141200834 -9582719 + MER31A LTR ERV1 1 485 0 567 109 33 0 chr11 141200974 141201066 -9582487 + MLT2B2 LTR ERVL 1 95 -425 1340 81 85 57 chr11 141201066 141201277 -9582276 + AluSg/x SINE Alu 88 304 -6 1867 175 92 11 chr11 141201282 141201631 -9581922 + MLT2B2 LTR ERVL 101 477 -38 544 129 54 0 chr11 141201633 141201726 -9581827 + MER4A LTR ERV1 1 98 -566 526 103 39 44 chr11 141201726 141201885 -9581668 + MER4A LTR ERV1 261 539 -203 258 303 0 0 chr11 141202391 141202490 -9581063 + A-rich Low_complexity Low_complexity 1 99 0 324 176 0 0 chr11 141202866 141202934 -9580619 + (CCGGG)n Simple_repeat Simple_repeat 3 70 0 820 175 88 0 chr11 141204451 141204622 -9578931 - MER5A DNA MER1_type -2 187 2 280 306 41 0 chr11 141204955 141205053 -9578500 + L2 LINE L2 3199 3300 -13 275 273 94 70 chr11 141205305 141205433 -9578120 - L2 LINE L2 -8 3264 3134 1740 183 7 0 chr11 141206091 141206375 -9577178 + AluJb SINE Alu 1 286 -26 492 291 96 9 chr11 141207509 141207739 -9575814 - MIR SINE MIR -3 259 10 412 268 164 57 chr11 141209650 141210127 -9573426 - L2 LINE L2 -7 3265 2735 273 162 0 0 chr11 141210240 141210308 -9573245 + (TCTCTG)n Simple_repeat Simple_repeat 2 69 0 740 212 29 29 chr11 141210664 141210834 -9572719 + AluJo SINE Alu 124 293 -19 355 257 92 75 chr11 141210859 141211151 -9572402 + L1MEd LINE L1 593 889 -5230 211 269 43 32 chr11 141211462 141211555 -9571998 - L2 LINE L2 -718 2596 2503 685 243 16 48 chr11 141212665 141212854 -9570699 - MIR SINE MIR -64 198 16 220 284 184 0 chr11 141217154 141217295 -9566258 + MIR SINE MIR 53 219 -43 23 0 0 0 chr11 141221329 141221352 -9562201 + AT_rich Low_complexity Low_complexity 1 23 0 2403 73 0 3 chr11 141221497 141221799 -9561754 - AluY SINE Alu -10 301 1 306 304 123 27 chr11 141223311 141223390 -9560163 + L1MEd LINE L1 2161 2231 -3898 2196 117 0 3 chr11 141223390 141223690 -9559863 - AluSg SINE Alu -11 299 1 306 304 123 27 chr11 141223690 141223985 -9559568 + L1MEd LINE L1 2231 2571 -3558 450 283 77 31 chr11 141224236 141224589 -9558964 + L1MEc LINE L1 1919 2287 -4109 7216 119 57 4 chr11 141224622 141225791 -9557762 + Tigger3b DNA MER2_type 2 1231 0 195 327 0 0 chr11 141226171 141226226 -9557327 - MIR SINE MIR -63 145 91 2169 99 0 3 chr11 141226385 141226668 -9556885 + AluSq SINE Alu 21 302 -11 251 301 68 45 chr11 141226996 141227129 -9556424 - MLT1H LTR MaLR -391 158 23 245 283 0 0 chr11 141227430 141227490 -9556063 - L2 LINE L2 0 3313 3254 2261 109 0 0 chr11 141228153 141228456 -9555097 + AluSx SINE Alu 1 303 -9 305 173 0 0 chr11 141228561 141228613 -9554940 - L2 LINE L2 -12 3260 3209 1377 274 125 30 chr11 141229752 141230690 -9552863 - L2 LINE L2 -1 3312 2302 7266 65 7 1 chr11 141230695 141231922 -9551631 + L1PA7 LINE L1 4924 6148 -6 1611 191 26 10 chr11 141232096 141232400 -9551153 + AluSx SINE Alu 1 309 -3 1135 56 17 22 chr11 141232406 141232585 -9550968 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 534 252 0 71 chr11 141232642 141232797 -9550756 + MIR SINE MIR 12 155 -107 1916 174 0 3 chr11 141233195 141233500 -9550053 - AluJb SINE Alu -8 304 1 215 409 56 13 chr11 141233642 141233945 -9549608 + L2 LINE L2 2430 2745 -569 201 318 102 0 chr11 141234155 141234243 -9549310 + L2 LINE L2 3209 3305 -8 2304 90 7 3 chr11 141234289 141234589 -9548964 + AluSc SINE Alu 1 301 -8 1258 153 18 31 chr11 141234674 141234896 -9548657 + AluJb SINE Alu 1 219 -93 280 163 0 0 chr11 141234912 141234961 -9548592 + AluSg/x SINE Alu 170 218 -82 280 163 0 0 chr11 141234944 141234993 -9548560 + AluSg/x SINE Alu 170 218 -82 280 163 0 0 chr11 141234976 141235025 -9548528 + AluSg/x SINE Alu 170 218 -82 280 163 0 0 chr11 141235008 141235057 -9548496 + AluSg/x SINE Alu 170 218 -82 280 163 0 0 chr11 141235040 141235089 -9548464 + AluSc SINE Alu 170 218 -81 780 158 33 0 chr11 141235108 141235228 -9548325 + AluJb SINE Alu 176 299 -13 1814 158 7 16 chr11 141235445 141235748 -9547805 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr11 141235998 141236020 -9547533 + AT_rich Low_complexity Low_complexity 1 22 0 280 213 33 0 chr11 141236073 141236134 -9547419 + L2 LINE L2 3251 3313 0 2071 251 13 32 chr11 141236830 141237448 -9546105 + L1ME3 LINE L1 5326 5931 -231 1862 149 21 0 chr11 141237448 141237729 -9545824 + AluSx SINE Alu 1 287 -25 622 0 107 23 chr11 141237730 141237861 -9545692 + (TAGA)n Simple_repeat Simple_repeat 1 142 0 958 223 22 13 chr11 141237883 141238107 -9545446 + L1ME3 LINE L1 5922 6147 -15 418 314 77 23 chr11 141238136 141238356 -9545197 - MIR SINE MIR -3 259 28 302 327 0 40 chr11 141238518 141238619 -9544934 - MIR3 SINE MIR -6 202 106 291 216 54 144 chr11 141238682 141238793 -9544760 - MIR SINE MIR -91 117 16 944 129 0 0 chr11 141239252 141239384 -9544169 + FLAM_C SINE Alu 1 132 -11 25 0 0 0 chr11 141239389 141239414 -9544139 + AT_rich Low_complexity Low_complexity 1 25 0 1160 208 141 82 chr11 141240037 141240181 -9543372 - MLT1D LTR MaLR 0 505 371 1684 95 41 0 chr11 141240181 141240402 -9543151 - MER30 DNA MER1_type 0 230 1 1160 208 141 82 chr11 141240402 141240734 -9542819 - MLT1D LTR MaLR -134 371 1 1357 285 93 29 chr11 141240736 141241071 -9542482 + L2 LINE L2 2428 2740 -573 1636 185 17 0 chr11 141241071 141241363 -9542190 + AluJo SINE Alu 1 297 -15 1357 285 93 29 chr11 141241363 141241861 -9541692 + L2 LINE L2 2740 3313 0 27 0 0 0 chr11 141242803 141242830 -9540723 + AT_rich Low_complexity Low_complexity 1 27 0 2165 100 4 0 chr11 141242832 141243112 -9540441 + AluSq SINE Alu 21 301 -12 481 269 8 50 chr11 141243114 141243233 -9540320 - MIR3 SINE MIR -82 126 13 523 234 35 7 chr11 141243620 141243765 -9539788 + MIR SINE MIR 114 262 0 8596 123 12 3 chr11 141243785 141245091 -9538462 + L1P LINE L1 4058 5375 -771 2346 86 0 0 chr11 141246957 141247249 -9536304 + AluSg SINE Alu 1 292 -18 411 113 0 0 chr11 141247249 141247311 -9536242 + (TA)n Simple_repeat Simple_repeat 1 62 0 234 152 0 0 chr11 141247312 141247358 -9536195 - LTR66 LTR ERVL -171 439 394 228 174 0 0 chr11 141247320 141247366 -9536187 + LTR66 LTR ERVL 394 439 -171 * 1255 187 26 73 chr11 141247375 141247718 -9535835 - MLT1A2 LTR MaLR -42 332 6 3857 174 30 1 chr11 141247927 141248587 -9534966 + L1MB2 LINE L1 5448 6126 -45 2277 97 0 26 chr11 141248587 141248895 -9534658 + AluSx SINE Alu 1 300 -12 698 191 26 0 chr11 141248905 141249020 -9534533 + FRAM SINE Alu 4 121 -55 198 0 0 0 chr11 141249020 141249042 -9534511 + (A)n Simple_repeat Simple_repeat 1 22 0 300 274 52 21 chr11 141249090 141249230 -9534323 + MIR SINE MIR 45 192 -61 2306 120 0 0 chr11 141250001 141250309 -9533244 + AluSx SINE Alu 1 308 -4 495 277 0 15 chr11 141250839 141250969 -9532584 + L2 LINE L2 3186 3313 0 239 71 24 0 chr11 141251840 141251882 -9531671 + (TG)n Simple_repeat Simple_repeat 1 43 0 1196 219 81 59 chr11 141251964 141252321 -9531232 + MLT1A1 LTR MaLR 1 365 0 352 308 126 25 chr11 141252345 141252504 -9531049 + MER5B DNA MER1_type 4 178 0 1498 289 101 52 chr11 141252630 141253658 -9529895 + HAL1 LINE L1 10 1087 -1420 673 208 126 156 chr11 141253660 141254230 -9529323 + MLT1H1 LTR MaLR 3 548 0 810 246 23 42 chr11 141254249 141254509 -9529044 + HAL1 LINE L1 1485 1739 -768 982 156 88 10 chr11 141254509 141254701 -9528852 + MER20 DNA MER1_type 7 213 -6 517 248 36 107 chr11 141254766 141255129 -9528424 + HAL1 LINE L1 1815 2151 -356 692 240 107 0 chr11 141255146 141255342 -9528211 - MIR SINE MIR -40 222 6 978 209 36 40 chr11 141255510 141255787 -9527766 + HAL1 LINE L1 2232 2507 0 22 0 0 0 chr11 141255787 141255809 -9527744 + AT_rich Low_complexity Low_complexity 1 22 0 4131 237 78 21 chr11 141256921 141257953 -9525600 + L1MD2 LINE L1 3447 4420 -1939 875 126 0 52 chr11 141257953 141258088 -9525465 + FLAM_C SINE Alu 5 132 -1 4131 237 78 21 chr11 141258088 141258736 -9524817 + L1MD2 LINE L1 4420 5030 -1329 1755 167 10 16 chr11 141258736 141259048 -9524505 + AluJb SINE Alu 1 310 -2 4131 237 78 21 chr11 141259048 141260093 -9523460 + L1MD2 LINE L1 5030 6359 0 23 33 0 0 chr11 141260100 141260130 -9523423 + AT_rich Low_complexity Low_complexity 1 30 0 644 306 18 0 chr11 141261543 141261713 -9521840 - MER63A DNA MER1_type -5 205 33 530 286 45 0 chr11 141261936 141262069 -9521484 + L2 LINE L2 3134 3272 0 235 350 51 0 chr11 141262065 141262202 -9521351 - MIR3 SINE MIR -16 192 49 * 189 0 0 0 chr11 141262495 141262516 -9521037 + (TCCC)n Simple_repeat Simple_repeat 1 21 0 1016 124 6 0 chr11 141262516 141262694 -9520859 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 934 259 0 19 chr11 141263115 141263327 -9520226 - ERVL-E LTR ERVL -3144 2620 2413 463 257 0 0 chr11 141263323 141263428 -9520125 - ERVL-E LTR ERVL -4573 1191 1087 * 643 168 2 87 chr11 141263466 141263601 -9519952 + L1MA9 LINE L1 5931 6020 -148 2313 114 3 0 chr11 141263601 141263909 -9519644 + AluSp SINE Alu 1 309 -4 643 168 2 87 chr11 141263909 141263945 -9519608 + L1MA9 LINE L1 6020 6057 -111 533 168 28 0 chr11 141263948 141264055 -9519498 + L1MA9 LINE L1 6181 6290 -22 21 57 0 0 chr11 141264055 141264090 -9519463 + AT_rich Low_complexity Low_complexity 1 35 0 1381 308 75 41 chr11 141264128 141264393 -9519160 - ERVL-E LTR ERVL -4774 990 735 1988 150 13 13 chr11 141264393 141264700 -9518853 - AluSx SINE Alu -5 307 1 1381 308 75 41 chr11 141264700 141265087 -9518466 - ERVL-E LTR ERVL -5029 735 316 344 208 0 14 chr11 141265357 141265429 -9518124 - MLT2E LTR ERVL -7 621 551 552 116 18 107 chr11 141265429 141265541 -9518012 + FLAM_A SINE Alu 30 131 -11 1308 173 75 31 chr11 141265545 141265800 -9517753 + AluJo SINE Alu 3 268 -44 1906 271 48 22 chr11 141265845 141266381 -9517172 - MLT2E LTR ERVL -60 568 19 188 267 20 89 chr11 141266863 141266964 -9516589 + MIR3 SINE MIR 109 202 -6 1941 143 0 7 chr11 141267015 141267295 -9516258 - AluSx SINE Alu -30 282 5 410 307 76 49 chr11 141267712 141267937 -9515616 + MIR SINE MIR 20 250 -12 503 322 90 40 chr11 141268097 141268476 -9515077 - L2 LINE L2 -5 3308 2911 474 262 243 23 chr11 141268554 141268768 -9514785 - LTR16C LTR ERVL -5 486 226 1026 197 0 10 chr11 141268806 141269004 -9514549 - L1MA6 LINE L1 -24 6276 6081 * 1683 134 36 0 chr11 141269003 141269279 -9514274 + L1MA6 LINE L1 5585 5870 -430 281 280 43 32 chr11 141269301 141269394 -9514159 - LTR16C LTR ERVL -311 180 87 2317 99 0 7 chr11 141269437 141269740 -9513813 + AluSx SINE Alu 1 301 -11 758 190 0 0 chr11 141270104 141270220 -9513333 - FLAM_C SINE Alu -17 116 1 2244 104 7 10 chr11 141270364 141270673 -9512880 - AluSx SINE Alu -4 308 1 1013 95 0 29 chr11 141270683 141270820 -9512733 - FLAM_C SINE Alu 0 133 1 594 325 91 12 chr11 141270844 141271087 -9512466 + MIR SINE MIR 1 262 0 21 57 0 0 chr11 141271118 141271153 -9512400 + AT_rich Low_complexity Low_complexity 1 35 0 857 147 0 22 chr11 141271255 141271391 -9512162 + AluJo SINE Alu 11 143 -169 1826 72 149 4 chr11 141271876 141272138 -9511415 + AluY SINE Alu 1 300 -1 34 24 0 0 chr11 141272915 141272956 -9510597 + AT_rich Low_complexity Low_complexity 1 41 0 710 295 5 14 chr11 141273388 141273595 -9509958 + MIR SINE MIR 4 208 -54 23 0 0 0 chr11 141273775 141273798 -9509755 + GC_rich Low_complexity Low_complexity 1 23 0 2195 133 52 17 chr11 141275298 141275660 -9507893 - THE1C LTR MaLR 0 375 1 2542 88 48 26 chr11 141276517 141276869 -9506684 - THE1B LTR MaLR -4 360 1 1855 150 3 23 chr11 141276955 141277255 -9506298 - AluJb SINE Alu -18 294 1 1375 201 0 15 chr11 141278045 141278314 -9505239 - AluJo SINE Alu -3 309 45 194 314 93 57 chr11 141279247 141279387 -9504166 + MIR SINE MIR 63 207 -55 * 669 277 47 10 chr11 141279366 141279610 -9503943 - MIR SINE MIR 0 262 7 359 200 0 0 chr11 141279919 141279984 -9503569 + L2 LINE L2 3208 3272 0 213 290 0 92 chr11 141279987 141280057 -9503496 + MIR SINE MIR 83 137 -125 2644 17 0 3 chr11 141280057 141280359 -9503194 + AluYa5 SINE Alu 1 301 -10 213 290 0 92 chr11 141280359 141280419 -9503134 + MIR SINE MIR 137 201 -61 2166 137 11 55 chr11 141280424 141280803 -9502750 + THE1B LTR MaLR 1 362 -2 7468 106 16 0 chr11 141280805 141281807 -9501746 + THE1B-int LTR MaLR 1 1018 -562 1022 157 68 0 chr11 141281864 141282055 -9501498 - MER6 DNA MER2_type -168 697 494 4270 75 6 6 chr11 141282079 141282623 -9500930 + THE1B-int LTR MaLR 1037 1580 0 2325 129 14 11 chr11 141282623 141282986 -9500567 + THE1B LTR MaLR 1 364 0 286 313 62 40 chr11 141283354 141283530 -9500023 + MIR SINE MIR 18 197 -65 1760 152 78 35 chr11 141284066 141284414 -9499139 + THE1C LTR MaLR 1 363 -12 194 241 0 19 chr11 141284773 141284827 -9498726 - L2 LINE L2 -4 3268 3216 180 345 46 11 chr11 141285202 141285289 -9498264 + L2 LINE L2 1318 1407 -1907 539 292 52 101 chr11 141285741 141286375 -9497178 - L2 LINE L2 -26 3287 2667 371 299 211 4 chr11 141286871 141287122 -9496431 - L3 LINE CR1 -1 1576 1274 1161 352 152 22 chr11 141287197 141287230 -9496323 + L3 LINE CR1 534 561 -1016 2138 124 0 0 chr11 141287230 141287537 -9496016 + AluSq SINE Alu 1 307 -6 1161 352 152 22 chr11 141287537 141288317 -9495236 + L3 LINE CR1 561 1480 -97 2136 89 3 0 chr11 141288317 141288641 -9494912 + AluSp SINE Alu 1 325 0 1161 352 152 22 chr11 141288641 141288734 -9494819 + L3 LINE CR1 1480 1560 -17 21 0 0 0 chr11 141291058 141291079 -9492474 + AT_rich Low_complexity Low_complexity 1 21 0 202 234 0 0 chr11 141291222 141291269 -9492284 + T-rich Low_complexity Low_complexity 1 47 0 325 304 130 22 chr11 141292370 141292508 -9491045 + MIR3 SINE MIR 32 184 -24 2115 107 7 3 chr11 141292742 141293042 -9490511 + AluSx SINE Alu 2 302 -10 21 0 0 0 chr11 141293236 141293257 -9490296 + AT_rich Low_complexity Low_complexity 1 21 0 218 102 34 68 chr11 141293263 141293322 -9490231 + (CAATA)n Simple_repeat Simple_repeat 4 60 0 762 171 0 0 chr11 141293347 141293464 -9490089 - FLAM_C SINE Alu -25 118 2 24 0 0 0 chr11 141293465 141293489 -9490064 + AT_rich Low_complexity Low_complexity 1 24 0 183 289 31 62 chr11 141293545 141293642 -9489911 - MIR SINE MIR -74 188 95 2145 125 0 0 chr11 141294403 141294820 -9488733 + AluSq SINE Alu 1 417 0 456 218 27 0 chr11 141294834 141294944 -9488609 - MLT1H LTR MaLR -424 125 13 414 280 63 0 chr11 141295118 141295261 -9488292 + L2 LINE L2 1489 1640 -1674 1077 290 107 42 chr11 141295267 141295977 -9487576 + L2 LINE L2 2558 3312 -1 244 296 43 17 chr11 141296004 141296119 -9487434 - MIR SINE MIR -44 218 101 1495 172 20 36 chr11 141296911 141297213 -9486340 - AluJo SINE Alu -15 297 1 842 291 158 17 chr11 141297272 141297678 -9485875 - L3 LINE CR1 -166 1411 949 260 344 66 8 chr11 141298179 141298301 -9485252 + L2 LINE L2 3139 3267 -5 210 318 30 0 chr11 141299065 141299131 -9484422 - MIR SINE MIR -16 246 179 312 367 0 0 chr11 141299512 141299602 -9483951 - L1MC4 LINE L1 -1339 6703 6614 306 0 0 0 chr11 141299606 141299640 -9483913 + (TC)n Simple_repeat Simple_repeat 1 34 0 1886 116 11 0 chr11 141299641 141299917 -9483636 - AluSx SINE Alu -33 279 1 823 279 13 13 chr11 141299969 141300202 -9483351 + MIR SINE MIR 25 257 -5 206 121 0 0 chr11 141300220 141300253 -9483300 - MIR SINE MIR -128 134 102 1033 191 10 5 chr11 141300770 141300974 -9482579 + MER3 DNA MER1_type 5 209 0 360 224 211 6 chr11 141302384 141302540 -9481013 - MER5A DNA MER1_type 0 189 2 252 300 50 0 chr11 141303114 141303214 -9480339 + MIR3 SINE MIR 88 192 -16 235 324 75 83 chr11 141304563 141304729 -9478824 - L2 LINE L2 -1 3271 3105 2207 101 0 3 chr11 141304729 141305035 -9478518 + AluSq SINE Alu 1 305 -8 235 324 75 83 chr11 141305035 141305217 -9478336 - L2 LINE L2 -167 3105 2926 375 305 80 13 chr11 141305266 141305417 -9478136 - L2 LINE L2 -468 2846 2686 237 294 107 53 chr11 141305680 141305870 -9477683 - MIR3 SINE MIR -61 201 1 396 298 46 26 chr11 141306246 141306397 -9477156 - MIR SINE MIR 0 262 109 2149 105 0 10 chr11 141306575 141306879 -9476674 + AluSx SINE Alu 1 301 -11 332 310 97 7 chr11 141306882 141307027 -9476526 - MIR SINE MIR -85 177 20 2319 65 3 0 chr11 141307415 141307708 -9475845 + AluY SINE Alu 1 294 -17 769 246 119 42 chr11 141307845 141308490 -9475063 + L1M4 LINE L1 3986 4680 -1466 286 157 19 28 chr11 141308504 141308575 -9474978 - MER58B DNA MER1_type -29 312 115 2404 71 0 7 chr11 141308694 141309004 -9474549 - AluY SINE Alu -3 308 1 321 304 49 21 chr11 141309224 141309510 -9474043 + L1M4 LINE L1 4945 5238 -908 1807 107 48 4 chr11 141309663 141309935 -9473618 - AluJb SINE Alu -15 297 14 195 42 0 0 chr11 141310570 141310594 -9472959 + (GGCTG)n Simple_repeat Simple_repeat 4 27 0 212 241 0 17 chr11 141310706 141310764 -9472789 + (TCCA)n Simple_repeat Simple_repeat 3 59 0 181 222 0 56 chr11 141311444 141311498 -9472055 - MIR SINE MIR -104 158 108 2130 127 0 0 chr11 141311591 141311899 -9471654 - AluSx SINE Alu -2 310 3 1816 148 7 10 chr11 141312551 141312861 -9470692 - AluJo SINE Alu -3 309 1 334 308 23 30 chr11 141313389 141313522 -9470031 - MIR3 SINE MIR -64 144 13 205 195 0 0 chr11 141314553 141314594 -9468959 + A-rich Low_complexity Low_complexity 1 41 0 2359 81 0 0 chr11 141315712 141316008 -9467545 + AluSq SINE Alu 1 296 -17 1301 184 55 0 chr11 141316019 141316274 -9467279 + AluJb SINE Alu 28 296 -16 212 382 44 0 chr11 141316366 141316434 -9467119 - MIR SINE MIR -166 96 26 216 97 0 0 chr11 141316486 141316517 -9467036 + (TG)n Simple_repeat Simple_repeat 2 32 0 405 0 0 0 chr11 141318425 141318470 -9465083 + (TC)n Simple_repeat Simple_repeat 2 46 0 749 232 12 12 chr11 141318666 141318834 -9464719 - MIR3 SINE MIR -18 190 23 298 85 34 0 chr11 141321698 141321757 -9461796 + (TA)n Simple_repeat Simple_repeat 1 61 0 1704 166 0 7 chr11 141322084 141322367 -9461186 + AluJo SINE Alu 1 281 -31 802 147 23 11 chr11 141322372 141322549 -9461004 + GA-rich Low_complexity Low_complexity 2 180 0 701 307 128 34 chr11 141323414 141323883 -9459670 - L3 LINE CR1 -9 1568 1056 2180 115 3 0 chr11 141323910 141324215 -9459338 - AluSx SINE Alu -6 306 1 401 280 127 0 chr11 141324292 141324410 -9459143 - MIR SINE MIR -72 190 58 269 299 232 23 chr11 141326680 141326857 -9456696 + MIR SINE MIR 48 261 -1 234 263 32 0 chr11 141326885 141326918 -9456635 + A-rich Low_complexity Low_complexity 4 34 -67 1876 158 0 16 chr11 141326918 141327235 -9456318 + AluJb SINE Alu 1 312 0 234 263 32 0 chr11 141327235 141327296 -9456257 + A-rich Low_complexity Low_complexity 34 101 0 2262 86 3 0 chr11 141328062 141328365 -9455188 - AluY SINE Alu -7 304 1 202 300 134 27 chr11 141328485 141328708 -9454845 + L2 LINE L2 2094 2340 -974 1485 85 5 0 chr11 141328813 141329002 -9454551 - AluY SINE Alu -121 190 1 251 283 19 66 chr11 141329110 141329216 -9454337 + L2 LINE L2 3171 3271 -1 276 382 0 0 chr11 141329962 141330072 -9453481 + MIR SINE MIR 30 139 -69 249 275 58 0 chr11 141331819 141331888 -9451665 - MIR SINE MIR -113 149 77 952 146 157 5 chr11 141332133 141332318 -9451235 + AluJb SINE Alu 86 298 -14 250 282 28 0 chr11 141332807 141332878 -9450675 + GA-rich Low_complexity Low_complexity 5 77 0 1717 159 11 4 chr11 141332965 141333242 -9450311 - AluJo SINE Alu -22 290 12 324 300 91 0 chr11 141333500 141333610 -9449943 - L2 LINE L2 -2 3270 3151 360 335 132 13 chr11 141333630 141333857 -9449696 + MIR SINE MIR 8 261 -1 265 323 196 0 chr11 141335094 141335252 -9448301 + MIR SINE MIR 8 196 -66 236 266 0 53 chr11 141335490 141335584 -9447969 + GA-rich Low_complexity Low_complexity 3 91 0 270 344 57 16 chr11 141336726 141336848 -9446705 + MER91C DNA MER1_type 14 140 0 2145 266 149 22 chr11 141339935 141340840 -9442713 + L2 LINE L2 1939 2958 -356 279 325 73 20 chr11 141341378 141341529 -9442024 - L3 LINE CR1 -37 1540 1382 721 59 0 29 chr11 141341933 141342035 -9441518 + L1PA5 LINE L1 6055 6153 -1 225 65 0 0 chr11 141342072 141342103 -9441450 + (TAA)n Simple_repeat Simple_repeat 1 31 0 285 29 0 0 chr11 141342855 141342889 -9440664 + (CA)n Simple_repeat Simple_repeat 1 34 0 1232 226 136 24 chr11 141343185 141343668 -9439885 + MER74A LTR ERVL 20 622 0 393 269 74 9 chr11 141344343 141344451 -9439102 - L2 LINE L2 -1 3312 3198 2175 122 0 0 chr11 141344652 141344940 -9438613 + AluSx SINE Alu 1 288 -24 751 150 108 0 chr11 141347045 141347165 -9436388 + FLAM_A SINE Alu 1 133 0 11528 128 49 19 chr11 141347288 141347366 -9436187 + L1M1 LINE L1 1362 1436 -6129 2323 100 3 0 chr11 141347366 141347665 -9435888 - AluSg SINE Alu -10 300 1 11528 128 49 19 chr11 141347665 141349589 -9433964 + L1M1 LINE L1 1436 3425 -4140 2361 109 58 0 chr11 141349612 141349989 -9433564 + L1MA2 LINE L1 5894 6292 -12 22 0 0 0 chr11 141349992 141350014 -9433539 + AT_rich Low_complexity Low_complexity 1 22 0 366 61 0 0 chr11 141350124 141350173 -9433380 + (TG)n Simple_repeat Simple_repeat 2 50 0 182 320 64 72 chr11 141350243 141350368 -9433185 - MIR3 SINE MIR -49 159 36 587 297 98 15 chr11 141351110 141351376 -9432177 - L2 LINE L2 0 3313 3026 659 263 46 42 chr11 141351936 141352153 -9431400 - MIR SINE MIR -23 239 22 244 330 0 58 chr11 141352209 141352312 -9431241 - L2 LINE L2 -6 3307 3211 318 50 0 0 chr11 141352385 141352425 -9431128 + (TG)n Simple_repeat Simple_repeat 1 40 0 183 42 0 0 chr11 141352427 141352451 -9431102 + (GA)n Simple_repeat Simple_repeat 2 25 0 1208 108 6 0 chr11 141354076 141354233 -9429320 - AluSx SINE Alu -154 158 1 645 307 97 40 chr11 141354493 141354897 -9428656 + L2 LINE L2 2360 2786 -528 335 153 17 0 chr11 141355203 141355262 -9428291 - Alu SINE Alu -3 299 240 819 181 0 0 chr11 141355262 141355389 -9428164 - AluJb SINE Alu -185 127 1 183 80 0 0 chr11 141355414 141355439 -9428114 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 256 258 216 45 chr11 141355492 141355825 -9427728 + L2 LINE L2 1667 2056 -1258 237 289 26 59 chr11 141355920 141356072 -9427481 + L2 LINE L2 2252 2398 -916 205 296 173 12 chr11 141356743 141356824 -9426729 + L2 LINE L2 3148 3241 -31 1394 191 106 35 chr11 141357001 141357342 -9426211 + MLT1A1 LTR MaLR 1 365 0 2094 135 6 6 chr11 141357377 141357689 -9425864 + AluSx SINE Alu 1 312 0 356 324 91 18 chr11 141357785 141358004 -9425549 + L2 LINE L2 2827 3061 -252 * 422 215 73 78 chr11 141358003 141358194 -9425359 + MIR SINE MIR 59 248 -14 1952 156 7 3 chr11 141358195 141358496 -9425057 - AluSx SINE Alu -10 302 1 1923 159 3 10 chr11 141358704 141359018 -9424535 - AluSx SINE Alu 0 312 1 194 261 146 46 chr11 141359105 141359235 -9424318 - MIR SINE MIR -21 241 99 2173 133 7 3 chr11 141359268 141359570 -9423983 + AluSx SINE Alu 1 303 -9 210 328 30 15 chr11 141361133 141361200 -9422353 + L3b LINE CR1 1511 1578 -5 223 260 187 57 chr11 141361409 141361532 -9422021 - L3 LINE CR1 -3 1574 1436 1097 169 132 29 chr11 141361538 141361604 -9421949 + Tigger7 DNA MER2_type 1 59 -674 1613 198 17 3 chr11 141361604 141361902 -9421651 + AluJb SINE Alu 9 310 -2 1097 169 132 29 chr11 141361902 141362077 -9421476 + Tigger7 DNA MER2_type 59 267 -466 970 299 107 80 chr11 141362091 141362247 -9421306 - L3 LINE CR1 -178 1399 1249 1867 124 12 0 chr11 141362247 141362496 -9421057 - AluSx SINE Alu -50 262 11 970 299 107 80 chr11 141362496 141362885 -9420668 - L3 LINE CR1 -328 1249 820 2168 126 3 19 chr11 141362885 141363202 -9420351 + AluSx SINE Alu 1 312 0 970 299 107 80 chr11 141363202 141363513 -9420040 - L3 LINE CR1 -757 820 519 1996 138 3 0 chr11 141363804 141364110 -9419443 - AluSx SINE Alu 0 307 1 24 0 0 0 chr11 141365254 141365278 -9418275 + AT_rich Low_complexity Low_complexity 1 24 0 1418 190 25 85 chr11 141365293 141365656 -9417897 + MER58B DNA MER1_type 1 341 0 1208 164 21 0 chr11 141366973 141367162 -9416391 + AluJo SINE Alu 3 195 -117 2032 105 6 59 chr11 141367191 141367515 -9416038 + AluSx SINE Alu 1 307 -5 555 169 18 30 chr11 141367538 141367704 -9415849 + GA-rich Low_complexity Low_complexity 4 167 0 212 196 0 18 chr11 141367950 141368006 -9415547 + GA-rich Low_complexity Low_complexity 5 59 0 260 210 48 16 chr11 141368124 141368186 -9415367 + CT-rich Low_complexity Low_complexity 6 69 0 304 127 48 0 chr11 141368211 141368274 -9415279 + GA-rich Low_complexity Low_complexity 3 68 0 189 333 113 34 chr11 141368663 141368867 -9414686 - L2 LINE L2 -37 3235 3016 2358 91 14 3 chr11 141369011 141369307 -9414246 + AluSx SINE Alu 1 299 -13 224 312 50 57 chr11 141369665 141369806 -9413747 + L3b LINE CR1 1105 1244 -339 290 234 91 0 chr11 141370805 141370882 -9412671 + MIR SINE MIR 63 146 -116 251 313 12 12 chr11 141370979 141371059 -9412494 + MIR SINE MIR 36 115 -93 21 36 0 0 chr11 141371130 141371158 -9412395 + AT_rich Low_complexity Low_complexity 1 28 0 1638 178 0 45 chr11 141371831 141372016 -9411537 + AluJo SINE Alu 1 168 -144 3522 124 14 68 chr11 141372016 141372044 -9411509 + LTR9 LTR ERV1 1 29 -583 2368 88 3 0 chr11 141372044 141372340 -9411213 + AluSq SINE Alu 5 301 -12 3522 124 14 68 chr11 141372340 141372958 -9410595 + LTR9 LTR ERV1 29 612 0 1638 178 0 45 chr11 141372958 141373081 -9410472 + AluJo SINE Alu 168 295 -17 1607 138 145 7 chr11 141373148 141373417 -9410136 - AluSg1 SINE Alu -2 307 2 264 369 47 7 chr11 141373497 141373646 -9409907 + MER5B DNA MER1_type 24 178 0 219 285 149 71 chr11 141373651 141373974 -9409579 + L2 LINE L2 1794 2141 -1173 502 240 40 56 chr11 141373977 141374102 -9409451 - L2 LINE L2 -3 3310 3188 267 188 25 75 chr11 141374258 141374338 -9409215 + L2 LINE L2 2163 2238 -1076 832 186 116 0 chr11 141374364 141374536 -9409017 - MER3 DNA MER1_type -17 192 1 418 304 89 18 chr11 141374539 141374707 -9408846 + MIR SINE MIR 34 213 -49 1108 99 0 0 chr11 141374760 141374902 -9408651 + AluSg/x SINE Alu 169 310 0 721 239 0 0 chr11 141374918 141375056 -9408497 + FLAM_C SINE Alu 2 139 -4 661 128 34 20 chr11 141375577 141375725 -9407828 + GA-rich Low_complexity Low_complexity 3 152 0 222 269 0 30 chr11 141375778 141375845 -9407708 + L2 LINE L2 2311 2375 -939 686 329 54 18 chr11 141375889 141376281 -9407272 + L2 LINE L2 2486 2891 -423 253 194 51 14 chr11 141376350 141376461 -9407092 + MIR SINE MIR 42 191 -71 1979 145 3 10 chr11 141376586 141376890 -9406663 - AluJb SINE Alu -10 302 1 253 196 0 0 chr11 141377022 141377068 -9406485 + L2 LINE L2 3261 3306 -7 2227 109 10 3 chr11 141377240 141377542 -9406011 + AluSc SINE Alu 1 304 -5 358 145 40 0 chr11 141377542 141377618 -9405935 + GA-rich Low_complexity Low_complexity 1 79 0 189 0 0 0 chr11 141377985 141378006 -9405547 + (A)n Simple_repeat Simple_repeat 1 21 0 844 129 0 0 chr11 141378084 141378200 -9405353 - FLAM_C SINE Alu -27 116 1 1069 70 11 38 chr11 141378898 141379083 -9404470 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2039 149 7 0 chr11 141379099 141379407 -9404146 - AluSx SINE Alu -2 310 1 2396 86 3 10 chr11 141379608 141379911 -9403642 - AluSq SINE Alu -7 306 6 459 351 40 50 chr11 141380152 141380708 -9402845 + L2 LINE L2 2063 2612 -702 337 235 76 76 chr11 141380695 141380827 -9402726 - MER5B DNA MER1_type -12 166 35 * 529 289 133 0 chr11 141380871 141381051 -9402502 + MER63A DNA MER1_type 7 210 0 219 69 0 0 chr11 141381061 141381090 -9402463 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1693 152 0 4 chr11 141381107 141381370 -9402183 - AluJo SINE Alu -40 272 11 2045 134 0 20 chr11 141382088 141382421 -9401132 + AluSx SINE Alu 1 312 0 2049 29 0 25 chr11 141382497 141382735 -9400818 - SVA Other Other 0 1386 1155 2455 80 0 3 chr11 141383135 141383437 -9400116 + AluY SINE Alu 1 301 -10 2378 93 0 6 chr11 141383495 141383807 -9399746 + AluSq SINE Alu 1 310 -3 2013 161 3 0 chr11 141385847 141386151 -9397402 + AluSq SINE Alu 1 305 -8 1670 192 77 16 chr11 141386833 141387311 -9396242 + MLT2B2 LTR ERVL 1 549 -5 1923 164 7 3 chr11 141387387 141387692 -9395861 + AluJo SINE Alu 1 306 -6 432 340 58 16 chr11 141387714 141387905 -9395648 + MIR3 SINE MIR 4 202 -6 400 299 31 67 chr11 141388204 141388263 -9395290 - MIR3 SINE MIR -5 203 143 1651 146 0 88 chr11 141388263 141388454 -9395099 - AluJb SINE Alu 0 310 157 2342 119 0 0 chr11 141388454 141388765 -9394788 - AluSx SINE Alu -1 311 1 1651 146 0 88 chr11 141388765 141388910 -9394643 - AluJb SINE Alu -153 157 1 400 299 31 67 chr11 141388910 141389042 -9394511 - MIR3 SINE MIR -65 143 17 2121 94 7 18 chr11 141389198 141389515 -9394038 - AluSx SINE Alu 0 314 1 391 217 33 142 chr11 141389518 141389730 -9393823 - L2 LINE L2 -24 3289 3101 328 266 78 16 chr11 141389717 141389845 -9393708 - MIR SINE MIR -125 137 2 * 731 145 0 83 chr11 141389976 141390121 -9393432 + FLAM_C SINE Alu 1 133 0 233 330 11 11 chr11 141391177 141391268 -9392285 - MIR SINE MIR -61 201 111 321 266 26 71 chr11 141391758 141391787 -9391766 - L1MC4 LINE L1 -1327 6715 6686 2134 128 7 0 chr11 141391787 141392076 -9391477 + AluSx SINE Alu 2 292 -20 321 266 26 71 chr11 141392076 141392159 -9391394 - L1MC4 LINE L1 -1356 6686 6608 2309 106 0 0 chr11 141392747 141393039 -9390514 - AluSx SINE Alu -20 292 1 1670 197 0 0 chr11 141393269 141393538 -9390015 + AluJo SINE Alu 1 269 -43 226 336 119 8 chr11 141393983 141394117 -9389436 + MIR SINE MIR 53 201 -61 412 242 94 39 chr11 141394889 141395017 -9388536 + L2 LINE L2 3171 3305 -8 1940 154 0 30 chr11 141395383 141395688 -9387865 + AluJo SINE Alu 4 299 -13 305 213 307 16 chr11 141395688 141395815 -9387738 + AluJb SINE Alu 137 300 -2 307 254 58 72 chr11 141396047 141396185 -9387368 - L2 LINE L2 0 3313 3178 330 286 176 33 chr11 141396668 141396878 -9386675 - L2 LINE L2 -923 2391 2152 1634 135 135 0 chr11 141396884 141397150 -9386403 + AluSx SINE Alu 1 302 0 229 343 0 0 chr11 141397157 141397227 -9386326 + GA-rich Low_complexity Low_complexity 3 72 0 753 172 0 0 chr11 141397235 141397351 -9386202 + FLAM_C SINE Alu 2 117 -26 377 258 31 62 chr11 141397742 141397870 -9385683 - MIR SINE MIR -116 146 23 245 291 0 0 chr11 141398025 141398080 -9385473 + MIR SINE MIR 43 97 -111 245 81 65 32 chr11 141398418 141398480 -9385073 + CT-rich Low_complexity Low_complexity 2 65 0 815 182 0 0 chr11 141398482 141398614 -9384939 - FLAM_A SINE Alu -1 132 1 283 274 0 14 chr11 141398619 141398692 -9384861 + L2 LINE L2 3234 3305 -8 2240 119 0 0 chr11 141398937 141399240 -9384313 + AluSx SINE Alu 1 303 -9 362 303 62 49 chr11 141399380 141399542 -9384011 + L3b LINE CR1 1288 1451 -132 2129 121 6 13 chr11 141399555 141399869 -9383684 - AluSx SINE Alu 0 312 1 399 232 22 75 chr11 141400297 141400590 -9382963 + MER21B LTR ERV1 6 248 -399 399 230 20 74 chr11 141400582 141400726 -9382827 + MER21B LTR ERV1 290 425 -438 924 163 21 21 chr11 141400726 141400916 -9382637 + MER4D LTR ERV1 1 190 -682 802 189 126 0 chr11 141400917 141401060 -9382493 - AluJb SINE Alu -18 294 134 3486 147 10 57 chr11 141401112 141401522 -9382031 + MER4E LTR ERV1 131 498 -281 2227 96 6 59 chr11 141401522 141401845 -9381708 + AluSg SINE Alu 1 306 -4 3486 147 10 57 chr11 141401845 141402115 -9381438 + MER4E LTR ERV1 498 779 0 1687 161 62 117 chr11 141402115 141402213 -9381340 + MER21B LTR ERV1 422 524 -339 3365 108 85 12 chr11 141402213 141402606 -9380947 + MER41A LTR ERV1 1 442 -112 2205 139 3 0 chr11 141402606 141402915 -9380638 - AluSx SINE Alu -2 310 1 3365 108 85 12 chr11 141402915 141403037 -9380516 + MER41A LTR ERV1 442 554 0 1687 161 62 117 chr11 141403037 141403391 -9380162 + MER21B LTR ERV1 524 849 -14 238 167 0 0 chr11 141403543 141403585 -9379968 + MSTB1 LTR MaLR 1 42 -384 1715 189 0 44 chr11 141403586 141403903 -9379650 - AluJb SINE Alu -9 303 1 887 139 7 28 chr11 141403903 141404047 -9379506 - AluJo SINE Alu -171 141 1 1710 204 49 5 chr11 141404049 141404261 -9379292 + MSTB1 LTR MaLR 35 216 -159 2279 115 72 26 chr11 141404261 141404609 -9378944 - THE1B LTR MaLR 0 364 1 1710 204 49 5 chr11 141404609 141404777 -9378776 + MSTB1 LTR MaLR 216 375 0 2162 116 7 0 chr11 141404880 141405174 -9378379 - AluSx SINE Alu -16 296 1 406 266 164 34 chr11 141407064 141407277 -9376276 + MIR SINE MIR 3 237 -25 3404 28 0 0 chr11 141408250 141408646 -9374907 + L1PA4 LINE L1 5756 6151 -4 1936 166 0 7 chr11 141409162 141409463 -9374090 + AluSg SINE Alu 1 299 -11 2311 175 10 0 chr11 141409469 141409875 -9373678 - L1M1 LINE L1 -6135 1430 1021 1392 214 39 3 chr11 141409870 141410178 -9373375 - L1M1 LINE L1 -7238 327 9 * 578 261 39 22 chr11 141410259 141410439 -9373114 - MER5A DNA MER1_type 0 189 7 1131 180 225 20 chr11 141410610 141410965 -9372588 + MSTC LTR MaLR 1 428 0 2110 101 25 4 chr11 141411587 141411863 -9371690 + AluSx SINE Alu 1 282 -30 22 0 0 0 chr11 141412183 141412205 -9371348 + AT_rich Low_complexity Low_complexity 1 22 0 2218 105 10 3 chr11 141412219 141412514 -9371039 - AluSx SINE Alu -14 298 2 276 272 285 0 chr11 141412523 141412681 -9370872 - MIR SINE MIR -12 250 48 2079 147 0 0 chr11 141412700 141413007 -9370546 - AluSx SINE Alu 0 312 6 714 305 128 34 chr11 141413883 141414352 -9369201 - L3 LINE CR1 -9 1568 1056 2372 117 0 0 chr11 141414379 141414686 -9368867 - AluSx SINE Alu -5 307 1 399 280 127 0 chr11 141414763 141414881 -9368672 - MIR SINE MIR -72 190 58 268 299 232 23 chr11 141417151 141417328 -9366225 + MIR SINE MIR 48 261 -1 238 219 21 52 chr11 141417356 141417389 -9366164 + A-rich Low_complexity Low_complexity 4 37 -59 2050 155 0 16 chr11 141417389 141417706 -9365847 + AluJb SINE Alu 1 312 0 238 219 21 52 chr11 141417706 141417768 -9365785 + A-rich Low_complexity Low_complexity 37 96 0 2448 79 3 0 chr11 141418534 141418837 -9364716 - AluY SINE Alu -7 304 1 220 309 124 21 chr11 141418986 141419180 -9364373 + L2 LINE L2 2127 2340 -974 1441 89 5 5 chr11 141419285 141419475 -9364078 - AluY SINE Alu -121 190 1 251 283 19 66 chr11 141419583 141419689 -9363864 + L2 LINE L2 3171 3271 -1 276 382 0 0 chr11 141420435 141420545 -9363008 + MIR SINE MIR 30 139 -69 249 275 58 0 chr11 141422290 141422359 -9361194 - MIR SINE MIR -113 149 77 952 146 157 5 chr11 141422604 141422789 -9360764 + AluJb SINE Alu 86 298 -14 250 282 28 0 chr11 141423278 141423349 -9360204 + GA-rich Low_complexity Low_complexity 5 77 0 1752 159 11 0 chr11 141423436 141423712 -9359841 - AluJo SINE Alu -22 290 12 302 309 91 0 chr11 141423970 141424080 -9359473 - L2 LINE L2 -2 3270 3151 360 335 132 13 chr11 141424100 141424327 -9359226 + MIR SINE MIR 8 261 -1 265 323 196 0 chr11 141425563 141425721 -9357832 + MIR SINE MIR 8 196 -66 236 266 0 53 chr11 141425959 141426053 -9357500 + GA-rich Low_complexity Low_complexity 3 91 0 270 344 57 16 chr11 141427194 141427316 -9356237 + MER91C DNA MER1_type 14 140 0 2177 263 149 23 chr11 141430403 141431309 -9352244 + L2 LINE L2 1939 2958 -356 279 325 73 20 chr11 141431849 141432000 -9351553 - L3 LINE CR1 -37 1540 1382 721 59 0 29 chr11 141432404 141432506 -9351047 + L1PA5 LINE L1 6055 6153 -1 273 29 0 0 chr11 141432543 141432577 -9350976 + (TAA)n Simple_repeat Simple_repeat 1 34 0 303 28 0 0 chr11 141433329 141433365 -9350188 + (CA)n Simple_repeat Simple_repeat 1 36 0 590 114 0 0 chr11 141433479 141433558 -9349995 - AluJ/FRAM SINE Alu -13 299 221 1257 228 144 23 chr11 141433628 141434124 -9349429 + MER74A LTR ERVL 1 622 0 393 269 74 9 chr11 141434799 141434907 -9348646 - L2 LINE L2 -1 3312 3198 2189 118 0 0 chr11 141435108 141435396 -9348157 + AluSx SINE Alu 1 288 -24 974 193 117 0 chr11 141437489 141437686 -9345867 + AluJo SINE Alu 1 220 -92 215 77 0 26 chr11 141438124 141438163 -9345390 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 221 294 130 41 chr11 141438184 141438330 -9345223 + L2 LINE L2 218 376 -2938 260 263 195 47 chr11 141438451 141438641 -9344912 - MIR SINE MIR -42 220 3 227 239 87 54 chr11 141439039 141439131 -9344422 - MIR3 SINE MIR -27 181 87 349 280 33 117 chr11 141439215 141439269 -9344284 - MIR3 SINE MIR -3 205 148 2181 75 10 45 chr11 141439269 141439577 -9343976 + AluSp SINE Alu 1 297 -16 349 280 33 117 chr11 141439577 141439736 -9343817 - MIR3 SINE MIR -60 148 10 250 203 263 51 chr11 141441372 141441490 -9342063 - MIR3 SINE MIR -45 163 21 2298 85 0 0 chr11 141441598 141441913 -9341640 - AluSx SINE Alu 0 315 1 26 0 0 0 chr11 141441928 141441954 -9341599 + AT_rich Low_complexity Low_complexity 1 26 0 330 224 80 9 chr11 141442426 141442552 -9341001 - MIR SINE MIR -63 145 18 219 217 0 0 chr11 141444245 141444291 -9339262 + GA-rich Low_complexity Low_complexity 1 46 0 1905 133 36 0 chr11 141445100 141445224 -9338329 + AluSx SINE Alu 1 119 -193 261 0 0 0 chr11 141445224 141445253 -9338300 + (TA)n Simple_repeat Simple_repeat 2 30 0 1905 133 36 0 chr11 141445253 141445407 -9338146 + AluSx SINE Alu 119 289 -23 1510 112 101 112 chr11 141445674 141446032 -9337521 + MER46B DNA MER2_type 1 229 -7 543 169 4 3 chr11 141451034 141451140 -9332413 + MSTA LTR MaLR 258 416 0 195 241 0 19 chr11 141451486 141451540 -9332013 - L2 LINE L2 -4 3268 3216 185 345 46 11 chr11 141451915 141452002 -9331551 + L2 LINE L2 1318 1407 -1907 550 292 52 101 chr11 141452454 141453088 -9330465 - L2 LINE L2 -26 3287 2667 364 299 211 4 chr11 141453584 141453835 -9329718 - L3 LINE CR1 -1 1576 1274 1136 352 152 22 chr11 141453910 141453943 -9329610 + L3 LINE CR1 534 561 -1016 2291 124 0 0 chr11 141453943 141454250 -9329303 + AluSq SINE Alu 1 307 -6 1136 352 152 22 chr11 141454250 141455030 -9328523 + L3 LINE CR1 561 1480 -97 2270 89 3 0 chr11 141455030 141455354 -9328199 + AluSp SINE Alu 1 325 0 1136 352 152 22 chr11 141455354 141455447 -9328106 + L3 LINE CR1 1480 1560 -17 21 0 0 0 chr11 141457772 141457793 -9325760 + AT_rich Low_complexity Low_complexity 1 21 0 202 234 0 0 chr11 141457936 141457983 -9325570 + T-rich Low_complexity Low_complexity 1 47 0 324 304 130 22 chr11 141459084 141459222 -9324331 + MIR3 SINE MIR 32 184 -24 2328 104 3 0 chr11 141459456 141459755 -9323798 + AluSq SINE Alu 2 301 -12 492 269 8 50 chr11 141459757 141459876 -9323677 - MIR3 SINE MIR -82 126 13 537 234 35 7 chr11 141460263 141460408 -9323145 + MIR SINE MIR 114 262 0 8075 123 12 3 chr11 141460428 141461734 -9321819 + L1P LINE L1 4058 5375 -771 2380 86 0 0 chr11 141463599 141463891 -9319662 + AluSg SINE Alu 1 292 -18 230 267 0 0 chr11 141463896 141463986 -9319567 - L1MC4 LINE L1 -1339 6703 6614 * 244 258 0 0 chr11 141463908 141463997 -9319556 + L1MC4 LINE L1 6614 6702 -1340 1178 189 26 73 chr11 141464017 141464360 -9319193 - MLT1A2 LTR MaLR -42 332 6 3610 174 30 1 chr11 141464569 141465229 -9318324 + L1MB2 LINE L1 5448 6126 -45 2233 107 0 26 chr11 141465229 141465537 -9318016 + AluSx SINE Alu 1 300 -12 680 191 26 0 chr11 141465547 141465662 -9317891 + FRAM SINE Alu 4 121 -55 198 0 0 0 chr11 141465662 141465684 -9317869 + (A)n Simple_repeat Simple_repeat 1 22 0 302 274 52 21 chr11 141465732 141465872 -9317681 + MIR SINE MIR 45 192 -61 2356 120 0 0 chr11 141466643 141466952 -9316601 + AluSx SINE Alu 1 309 -3 497 286 0 8 chr11 141467485 141467611 -9315942 + L2 LINE L2 3189 3313 0 239 71 24 0 chr11 141468483 141468525 -9315028 + (TG)n Simple_repeat Simple_repeat 1 43 0 1116 216 81 59 chr11 141468607 141468964 -9314589 + MLT1A1 LTR MaLR 1 365 0 349 308 126 25 chr11 141468988 141469147 -9314406 + MER5B DNA MER1_type 4 178 0 815 296 74 60 chr11 141469273 141469878 -9313675 + HAL1 LINE L1 10 623 -1884 2302 98 0 26 chr11 141470019 141470326 -9313227 - AluSx SINE Alu -13 299 1 3610 174 30 1 chr11 141470326 141470986 -9312567 - L1MB2 LINE L1 -45 6126 5448 1178 189 26 73 chr11 141471195 141471538 -9312015 + MLT1A2 LTR MaLR 6 332 -42 244 258 0 0 chr11 141471558 141471647 -9311906 - L1MC4 LINE L1 -1340 6702 6614 230 267 0 0 chr11 141471569 141471659 -9311894 + L1MC4 LINE L1 6614 6703 -1339 * 2260 89 0 0 chr11 141471676 141471956 -9311597 - AluSg SINE Alu -30 280 1 8075 123 12 3 chr11 141473821 141475127 -9308426 - L1P LINE L1 -771 5375 4058 537 234 35 7 chr11 141475147 141475292 -9308261 - MIR SINE MIR 0 262 114 492 269 8 50 chr11 141475679 141475798 -9307755 + MIR3 SINE MIR 13 126 -82 2062 153 0 0 chr11 141475800 141476100 -9307453 - AluSx SINE Alu -12 300 1 399 280 127 0 chr11 141476177 141476295 -9307258 - MIR SINE MIR -72 190 58 268 299 232 23 chr11 141478565 141478742 -9304811 + MIR SINE MIR 48 261 -1 234 263 32 0 chr11 141478770 141478803 -9304750 + A-rich Low_complexity Low_complexity 4 34 -67 2034 158 0 16 chr11 141478803 141479120 -9304433 + AluJb SINE Alu 1 312 0 234 263 32 0 chr11 141479120 141479181 -9304372 + A-rich Low_complexity Low_complexity 34 101 0 2411 86 3 0 chr11 141479947 141480250 -9303303 - AluY SINE Alu -7 304 1 202 300 134 27 chr11 141480370 141480593 -9302960 + L2 LINE L2 2094 2340 -974 1485 85 5 0 chr11 141480698 141480887 -9302666 - AluY SINE Alu -121 190 1 251 283 19 66 chr11 141480995 141481101 -9302452 + L2 LINE L2 3171 3271 -1 258 382 0 0 chr11 141481847 141481957 -9301596 + MIR SINE MIR 30 139 -69 235 275 58 0 chr11 141483704 141483773 -9299780 - MIR SINE MIR -113 149 77 932 151 157 5 chr11 141484018 141484203 -9299350 + AluJb SINE Alu 86 298 -14 250 282 28 0 chr11 141484692 141484763 -9298790 + GA-rich Low_complexity Low_complexity 5 77 0 1722 159 11 4 chr11 141484850 141485127 -9298426 - AluJo SINE Alu -22 290 12 343 319 62 0 chr11 141485385 141485498 -9298055 - L2 LINE L2 -2 3270 3151 330 334 108 12 chr11 141485524 141485745 -9297808 + MIR SINE MIR 17 261 -1 238 323 196 0 chr11 141486981 141487139 -9296414 + MIR SINE MIR 8 196 -66 236 266 0 53 chr11 141487377 141487471 -9296082 + GA-rich Low_complexity Low_complexity 3 91 0 247 353 57 16 chr11 141488613 141488735 -9294818 - MER91C DNA MER1_type -13 127 1 1967 266 151 25 chr11 141491822 141492728 -9290825 + L2 LINE L2 1939 2958 -356 257 325 73 20 chr11 141493268 141493419 -9290134 - L3 LINE CR1 -37 1540 1382 685 59 0 29 chr11 141493823 141493925 -9289628 + L1PA5 LINE L1 6055 6153 -1 225 65 0 0 chr11 141493962 141493993 -9289560 + (TAA)n Simple_repeat Simple_repeat 1 31 0 285 29 0 0 chr11 141494745 141494779 -9288774 + (CA)n Simple_repeat Simple_repeat 1 34 0 556 114 0 0 chr11 141494893 141494972 -9288581 - AluJ/FRAM SINE Alu -13 299 221 1355 240 151 26 chr11 141495042 141495538 -9288015 + MER74A LTR ERVL 1 558 0 364 278 65 0 chr11 141496213 141496321 -9287232 - L2 LINE L2 -1 3312 3198 2186 122 0 0 chr11 141496522 141496810 -9286743 + AluSx SINE Alu 1 288 -24 674 154 111 0 chr11 141498904 141499021 -9284532 + FLAM_A SINE Alu 1 130 -3 727 175 8 0 chr11 141499021 141499147 -9284406 + FLAM_A SINE Alu 5 131 -2 215 77 0 26 chr11 141499539 141499578 -9283975 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 191 308 123 34 chr11 141499599 141499745 -9283808 + L2 LINE L2 218 376 -2938 223 268 195 47 chr11 141499866 141500056 -9283497 - MIR SINE MIR -42 220 3 206 239 87 54 chr11 141500454 141500546 -9283007 - MIR3 SINE MIR -27 181 87 310 290 33 117 chr11 141500630 141500684 -9282869 - MIR3 SINE MIR -3 205 148 2194 75 10 45 chr11 141500684 141500992 -9282561 + AluSp SINE Alu 1 297 -16 310 290 33 117 chr11 141500992 141501151 -9282402 - MIR3 SINE MIR -60 148 10 225 204 129 54 chr11 141502787 141502880 -9280673 - MIR3 SINE MIR -45 163 64 2316 85 0 0 chr11 141503013 141503328 -9280225 - AluSx SINE Alu 0 315 1 26 0 0 0 chr11 141503343 141503369 -9280184 + AT_rich Low_complexity Low_complexity 1 26 0 314 164 16 0 chr11 141503841 141503902 -9279651 - MIR SINE MIR -105 157 96 219 217 0 0 chr11 141505661 141505707 -9277846 + GA-rich Low_complexity Low_complexity 1 46 0 1917 133 36 0 chr11 141506516 141506640 -9276913 + AluSx SINE Alu 1 119 -193 261 0 0 0 chr11 141506640 141506669 -9276884 + (TA)n Simple_repeat Simple_repeat 2 30 0 1917 133 36 0 chr11 141506669 141506823 -9276730 + AluSx SINE Alu 119 289 -23 1510 112 101 112 chr11 141507090 141507448 -9276105 + MER46B DNA MER2_type 1 229 -7 309 160 0 64 chr11 141511861 141511955 -9271598 + C-rich Low_complexity Low_complexity 1 88 0 224 329 0 13 chr11 141512566 141512642 -9270911 + L3 LINE CR1 1499 1573 -4 771 191 9 5 chr11 141512881 141513321 -9270232 + (CA)n Simple_repeat Simple_repeat 1 442 0 305 208 0 14 chr11 141515717 141515789 -9267764 - MIR3 SINE MIR -34 174 104 359 313 135 4 chr11 141516885 141517144 -9266409 - L3b LINE CR1 -179 1404 1112 194 297 0 0 chr11 141519290 141519354 -9264199 - MIR3 SINE MIR -13 195 132 679 206 8 0 chr11 141520849 141520980 -9262573 + FLAM_A SINE Alu 1 132 -1 198 340 146 19 chr11 141521614 141522031 -9261522 + L2 LINE L2 2316 2785 -529 216 0 0 0 chr11 141522229 141522253 -9261300 + (T)n Simple_repeat Simple_repeat 1 24 0 511 313 9 37 chr11 141522550 141522767 -9260786 - MIR SINE MIR 0 262 52 210 307 0 29 chr11 141523155 141523295 -9260258 + (CCCCAG)n Simple_repeat Simple_repeat 5 140 0 213 39 0 0 chr11 141523602 141523628 -9259925 + (TC)n Simple_repeat Simple_repeat 1 26 0 182 318 30 0 chr11 141524109 141524175 -9259378 - MIR SINE MIR -116 146 79 187 234 0 21 chr11 141524188 141524235 -9259318 - L2 LINE L2 -5 3267 3222 212 298 16 33 chr11 141524358 141524479 -9259074 - L2 LINE L2 -214 3058 2940 290 273 152 0 chr11 141525444 141525543 -9258010 + MIR SINE MIR 139 252 -10 2244 138 0 0 chr11 141525575 141525887 -9257666 + AluSx SINE Alu 1 312 0 330 271 19 19 chr11 141526046 141526153 -9257400 + MER5A DNA MER1_type 82 188 -1 231 204 204 11 chr11 141527108 141527196 -9256357 - MIR3 SINE MIR -11 197 93 760 314 88 18 chr11 141529037 141529490 -9254063 + L2 LINE L2 2825 3309 -4 2635 62 0 0 chr11 141529506 141529813 -9253740 - AluY SINE Alu -4 307 1 407 260 24 8 chr11 141530536 141530659 -9252894 - L3 LINE CR1 -23 1554 1430 1289 225 3 34 chr11 141530959 141531257 -9252296 + AluJo SINE Alu 1 289 -23 303 262 167 56 chr11 141531596 141531722 -9251831 - L2 LINE L2 0 3272 3133 183 358 150 5 chr11 141532348 141532541 -9251012 - L3b LINE CR1 -1 1582 1362 1192 162 0 87 chr11 141532549 141532802 -9250751 + AluJb SINE Alu 82 312 0 576 257 225 32 chr11 141532964 141533373 -9250180 - L3 LINE CR1 -78 1499 1012 1227 198 58 4 chr11 141533679 141533936 -9249617 + MER58B DNA MER1_type 71 341 0 22 0 0 0 chr11 141534095 141534117 -9249436 + AT_rich Low_complexity Low_complexity 1 22 0 847 120 8 0 chr11 141534117 141534234 -9249319 - FLAM_C SINE Alu -15 118 1 468 0 0 0 chr11 141535566 141535618 -9247935 + (CA)n Simple_repeat Simple_repeat 2 53 0 183 186 0 0 chr11 141535972 141536015 -9247538 + CT-rich Low_complexity Low_complexity 2 44 0 329 225 11 22 chr11 141536044 141536133 -9247420 + (CACG)n Simple_repeat Simple_repeat 1 88 0 275 311 192 6 chr11 141536812 141536979 -9246574 - MIR SINE MIR -50 212 15 362 260 39 0 chr11 141537106 141537210 -9246343 - MER5A DNA MER1_type -68 121 14 224 214 58 68 chr11 141537752 141537855 -9245698 + MIR SINE MIR 119 220 -42 2056 122 0 0 chr11 141538025 141538303 -9245250 + AluSx SINE Alu 1 278 -34 1264 292 12 10 chr11 141538500 141539011 -9244542 + L1P LINE L1 2304 2815 -3331 964 125 0 13 chr11 141539016 141539168 -9244385 + AluYa5 SINE Alu 161 310 -1 4286 191 18 7 chr11 141539168 141539992 -9243561 + L1P LINE L1 3379 4211 -1935 1831 254 21 32 chr11 141539988 141540548 -9243005 + L1ME1 LINE L1 5608 6161 -5 * 22050 73 4 13 chr11 141540766 141543759 -9239794 + L1P LINE L1 2298 5265 -881 8081 111 3 25 chr11 141543859 141545112 -9238441 + HERVH LTR ERV1 1763 2987 -4726 5850 105 6 2 chr11 141545106 141545957 -9237596 + HERVH LTR ERV1 3140 3993 -3720 * 1335 109 0 0 chr11 141545959 141546142 -9237411 + HERVH LTR ERV1 4488 4670 -3043 * 3463 152 2 17 chr11 141546139 141546723 -9236830 + HERVH LTR ERV1 4575 5149 -2564 1377 139 19 0 chr11 141546724 141546940 -9236613 + HERVH LTR ERV1 5600 5819 -1894 2293 117 48 13 chr11 141546940 141547317 -9236236 + HERVH LTR ERV1 7324 7713 0 2432 94 152 15 chr11 141547317 141547711 -9235842 + LTR7 LTR ERV1 1 448 -2 342 0 0 0 chr11 141547842 141547880 -9235673 + (CA)n Simple_repeat Simple_repeat 2 39 0 458 139 0 0 chr11 141548479 141548551 -9235002 + MER21-int LTR ERV1 3883 3954 -237 280 317 44 12 chr11 141548556 141548805 -9234748 - L1M4 LINE L1 -913 5233 4977 23 0 0 0 chr11 141549240 141549263 -9234290 + AT_rich Low_complexity Low_complexity 1 23 0 304 303 76 16 chr11 141549453 141549757 -9233796 - L1M4 LINE L1 -2019 4127 3806 1301 190 17 0 chr11 141549795 141550032 -9233521 + MSTB LTR MaLR 182 422 -4 224 269 121 60 chr11 141550235 141550384 -9233169 - MIR3 SINE MIR -9 199 42 189 0 0 0 chr11 141551435 141551456 -9232097 + (T)n Simple_repeat Simple_repeat 1 21 0 215 340 43 24 chr11 141551593 141551783 -9231770 + MIR SINE MIR 17 207 -55 1279 291 50 4 chr11 141552695 141553199 -9230354 + MER90 LTR ERV1 6 612 -2 22 0 0 0 chr11 141554584 141554606 -9228947 + AT_rich Low_complexity Low_complexity 1 22 0 901 272 68 43 chr11 141555267 141555635 -9227918 + L1 LINE L1 2 378 -5763 721 158 0 162 chr11 141555712 141555790 -9227763 + L1 LINE L1 3574 3663 -2547 2095 119 70 17 chr11 141555790 141556134 -9227419 + THE1B LTR MaLR 3 364 0 721 158 0 162 chr11 141556134 141556320 -9227233 + L1 LINE L1 3663 3795 -2415 4968 227 6 26 chr11 141556324 141557574 -9225979 - L1PA12 LINE L1 -4072 3512 1499 1009 275 104 58 chr11 141557569 141558079 -9225474 - L1P3 LINE L1 -5027 1971 610 * 2529 275 43 38 chr11 141558085 141558895 -9224658 - L1P3 LINE L1 -6761 820 7 7778 195 42 12 chr11 141558899 141560432 -9223121 - MSTB-int LTR MaLR -73 1578 1 1457 221 9 3 chr11 141560432 141560760 -9222793 - MSTB LTR MaLR 0 426 3 9169 239 55 28 chr11 141560761 141564135 -9219418 + L1PA13 LINE L1 1 3466 -3331 999 126 0 7 chr11 141564140 141564291 -9219262 + AluYa5 SINE Alu 161 310 -1 4286 191 18 7 chr11 141564291 141565115 -9218438 + L1PA13 LINE L1 4030 4862 -1935 1831 254 21 32 chr11 141565111 141565671 -9217882 + L1ME1 LINE L1 5608 6161 -5 * 339 297 210 5 chr11 141566120 141566315 -9217238 + L3 LINE CR1 1335 1569 -8 304 310 181 7 chr11 141567273 141567428 -9216125 - MIR SINE MIR -10 252 71 6150 94 16 0 chr11 141568126 141568983 -9214570 - HERVH LTR ERV1 -6043 1670 800 3077 105 4 21 chr11 141569041 141569508 -9214045 - HERVH LTR ERV1 -7254 459 1 2548 92 128 8 chr11 141569510 141569910 -9213643 - LTR7 LTR ERV1 -2 448 1 268 289 13 81 chr11 141570681 141570830 -9212723 - MIR SINE MIR -10 252 114 540 122 296 0 chr11 141570837 141570935 -9212618 + MER41C LTR ERV1 281 407 -147 203 293 40 0 chr11 141570949 141571024 -9212529 - L3 LINE CR1 -166 1411 1334 240 226 0 65 chr11 141571104 141571166 -9212387 - MIR SINE MIR -2 260 203 2689 86 9 0 chr11 141571472 141571820 -9211733 + MER4E LTR ERV1 1 351 -428 2115 90 57 13 chr11 141571830 141572130 -9211423 - THE1B LTR MaLR -51 313 1 402 259 182 21 chr11 141572449 141572592 -9210961 - MER5A DNA MER1_type -15 174 9 1109 266 49 71 chr11 141572606 141573058 -9210495 - MLT1J LTR MaLR -69 442 1 193 330 104 9 chr11 141573174 141573289 -9210264 - MIR SINE MIR -57 205 80 7543 55 17 2 chr11 141573376 141574652 -9208901 - L1PA7 LINE L1 -1 6153 4869 192 284 16 50 chr11 141576138 141576360 -9207193 + L2 LINE L2 3131 3313 0 2291 100 7 0 chr11 141577208 141577509 -9206044 - AluSc SINE Alu -6 303 1 254 330 68 37 chr11 141577669 141577860 -9205693 - MIR3 SINE MIR -6 202 6 223 388 20 27 chr11 141579129 141579281 -9204272 + MIR SINE MIR 1 152 -56 241 177 32 16 chr11 141579406 141579468 -9204085 + (TAA)n Simple_repeat Simple_repeat 2 64 0 592 242 110 16 chr11 141579500 141579682 -9203871 - MIR SINE MIR -59 203 5 2472 185 42 38 chr11 141580199 141580702 -9202851 + MLT1D LTR MaLR 1 505 0 860 216 57 10 chr11 141581356 141581564 -9201989 - MLT1D LTR MaLR -2 503 318 28 0 0 0 chr11 141582133 141582161 -9201392 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr11 141582242 141582272 -9201281 + AT_rich Low_complexity Low_complexity 1 30 0 6695 85 12 6 chr11 141582410 141583615 -9199938 + L1PA8 LINE L1 4950 6164 -8 2703 69 0 6 chr11 141583858 141584204 -9199349 - L1PA8A LINE L1 0 6131 5788 711 173 15 23 chr11 141584342 141584467 -9199086 + FLAM_C SINE Alu 11 136 -176 2145 114 7 0 chr11 141584467 141584775 -9198778 + AluSg SINE Alu 1 310 0 327 85 0 0 chr11 141584785 141584832 -9198721 + (A)n Simple_repeat Simple_repeat 1 47 0 192 77 0 0 chr11 141584989 141585015 -9198538 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 610 317 73 75 chr11 141585511 141585883 -9197670 - L2 LINE L2 -6 3266 2896 998 206 23 0 chr11 141585888 141586063 -9197490 - MER58A DNA MER1_type 0 224 46 262 329 135 44 chr11 141586136 141586476 -9197077 - L2 LINE L2 -457 2857 2487 213 274 0 0 chr11 141586813 141586864 -9196689 + (CTG)n Simple_repeat Simple_repeat 1 51 0 333 0 0 0 chr11 141587082 141587119 -9196434 + (CA)n Simple_repeat Simple_repeat 1 37 0 219 300 36 64 chr11 141587247 141587387 -9196166 + L2 LINE L2 2919 3054 -218 681 47 0 0 chr11 141587497 141587582 -9195971 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 233 240 40 0 chr11 141587598 141587648 -9195905 + L2 LINE L2 3254 3305 -8 2055 184 80 32 chr11 141590872 141591346 -9192207 - LOR1a LTR ERV1 0 497 1 3792 93 16 38 chr11 141591548 141592172 -9191381 + MER4B LTR ERV1 1 779 0 28 29 0 0 chr11 141592886 141592921 -9190632 + AT_rich Low_complexity Low_complexity 1 35 0 279 93 0 0 chr11 141593192 141593235 -9190318 + (TG)n Simple_repeat Simple_repeat 1 43 0 6231 107 7 8 chr11 141594013 141595401 -9188152 + L1PA15 LINE L1 4780 6165 0 406 309 56 88 chr11 141596296 141596496 -9187057 + L2 LINE L2 2550 2755 -517 1598 158 0 56 chr11 141596496 141596842 -9186711 - AluJb SINE Alu 0 329 1 406 309 56 88 chr11 141596842 141597067 -9186486 + L2 LINE L2 2755 2960 -312 1066 162 66 170 chr11 141597067 141597585 -9185968 + MER4C LTR ERV1 2 465 0 406 309 56 88 chr11 141597585 141597681 -9185872 + L2 LINE L2 2960 3058 -214 31 26 0 0 chr11 141597761 141597799 -9185754 + AT_rich Low_complexity Low_complexity 1 38 0 322 330 10 0 chr11 141597892 141597995 -9185558 + L2 LINE L2 3167 3270 -2 387 297 101 7 chr11 141598136 141598274 -9185279 + L1MC4a LINE L1 4958 5108 -1038 30 0 0 0 chr11 141598356 141598386 -9185167 + AT_rich Low_complexity Low_complexity 1 30 0 657 298 160 18 chr11 141598495 141599047 -9184506 + L1MC4a LINE L1 5259 5825 -345 1403 101 5 5 chr11 141599244 141599443 -9184110 + AluSc SINE Alu 1 199 -110 771 186 12 5 chr11 141599780 141600239 -9183314 + (CA)n Simple_repeat Simple_repeat 1 462 0 380 282 147 15 chr11 141603898 141604157 -9179396 - L3b LINE CR1 -179 1404 1112 205 297 0 0 chr11 141606303 141606367 -9177186 - MIR3 SINE MIR -13 195 132 705 195 8 0 chr11 141607863 141607991 -9175562 + FLAM_A SINE Alu 4 132 -1 21 0 0 0 chr11 141609247 141609268 -9174285 + AT_rich Low_complexity Low_complexity 1 21 0 541 313 9 37 chr11 141609561 141609778 -9173775 - MIR SINE MIR 0 262 52 262 304 0 29 chr11 141610166 141610337 -9173216 + (CCCCAG)n Simple_repeat Simple_repeat 5 170 0 213 39 0 0 chr11 141610644 141610670 -9172883 + (TC)n Simple_repeat Simple_repeat 1 26 0 193 318 30 0 chr11 141611151 141611217 -9172336 - MIR SINE MIR -116 146 79 252 321 127 76 chr11 141611230 141611585 -9171968 - L2 LINE L2 -5 3267 2895 319 273 152 0 chr11 141612486 141612585 -9170968 + MIR SINE MIR 139 252 -10 182 108 270 0 chr11 141612553 141612590 -9170963 + L2 LINE L2 3257 3303 -10 * 2086 138 0 0 chr11 141612617 141612929 -9170624 + AluSx SINE Alu 1 312 0 352 271 19 19 chr11 141613088 141613195 -9170358 + MER5A DNA MER1_type 82 188 -1 246 195 218 11 chr11 141614151 141614238 -9169315 - MIR3 SINE MIR -11 197 93 817 300 95 24 chr11 141616079 141616532 -9167021 + L2 LINE L2 2825 3309 -4 2473 62 0 0 chr11 141616548 141616855 -9166698 - AluY SINE Alu -4 307 1 192 404 26 13 chr11 141616867 141617018 -9166535 - L3 LINE CR1 -149 1428 1276 419 260 24 8 chr11 141617578 141617701 -9165852 - L3 LINE CR1 -23 1554 1430 1641 173 3 20 chr11 141618001 141618302 -9165251 + AluJo SINE Alu 1 296 -16 330 246 167 56 chr11 141618634 141618760 -9164793 - L2 LINE L2 0 3272 3133 184 319 190 9 chr11 141618836 141618952 -9164601 + MIR3 SINE MIR 33 169 -39 206 337 155 10 chr11 141619386 141619579 -9163974 - L3b LINE CR1 -1 1582 1362 1117 162 0 87 chr11 141619587 141619840 -9163713 + AluJb SINE Alu 82 312 0 639 255 219 38 chr11 141619991 141620411 -9163142 - L3 LINE CR1 -70 1507 1012 1234 198 58 4 chr11 141620717 141620974 -9162579 + MER58B DNA MER1_type 71 341 0 22 0 0 0 chr11 141621133 141621155 -9162398 + AT_rich Low_complexity Low_complexity 1 22 0 812 120 8 0 chr11 141621155 141621272 -9162281 - FLAM_C SINE Alu -15 118 1 429 20 0 0 chr11 141622604 141622654 -9160899 + (CA)n Simple_repeat Simple_repeat 2 51 0 21 36 0 0 chr11 141622755 141622783 -9160770 + GC_rich Low_complexity Low_complexity 1 28 0 183 186 0 0 chr11 141622999 141623042 -9160511 + CT-rich Low_complexity Low_complexity 2 44 0 329 225 11 22 chr11 141623071 141623160 -9160393 + (CACG)n Simple_repeat Simple_repeat 1 88 0 297 317 192 6 chr11 141623834 141624001 -9159552 - MIR SINE MIR -50 212 15 370 260 39 0 chr11 141624128 141624232 -9159321 - MER5A DNA MER1_type -68 121 14 242 243 119 33 chr11 141624690 141624877 -9158676 + MIR SINE MIR 18 220 -42 2219 110 0 0 chr11 141625047 141625356 -9158197 + AluSx SINE Alu 1 309 -3 333 341 16 31 chr11 141625386 141625515 -9158038 + MIR SINE MIR 17 143 -65 279 213 0 16 chr11 141625699 141625760 -9157793 + MIR SINE MIR 176 235 -27 629 300 31 13 chr11 141626125 141626352 -9157201 - MIR SINE MIR -20 242 12 21 0 0 0 chr11 141627016 141627037 -9156516 + AT_rich Low_complexity Low_complexity 1 21 0 2038 123 3 0 chr11 141627300 141627592 -9155961 + AluSq SINE Alu 1 293 -20 2020 115 3 3 chr11 141627687 141627973 -9155580 + AluSx SINE Alu 3 288 -24 216 242 65 16 chr11 141628043 141628105 -9155448 - MIR SINE MIR -50 212 148 687 229 45 11 chr11 141628120 141628299 -9155254 + LTR41 LTR ERVL 10 194 -579 409 188 67 130 chr11 141628384 141628604 -9154949 + LTR50 LTR ERVL 510 716 -79 1609 154 0 68 chr11 141628604 141628928 -9154625 - AluJo SINE Alu -10 302 1 409 188 67 130 chr11 141628928 141629004 -9154549 + LTR50 LTR ERVL 716 795 0 329 295 193 12 chr11 141629101 141629267 -9154286 - MIR SINE MIR -27 235 40 528 252 172 0 chr11 141630189 141630340 -9153213 + MER5B DNA MER1_type 2 178 0 221 266 0 16 chr11 141630567 141630631 -9152922 - MIR SINE MIR -105 157 95 1714 91 142 14 chr11 141630807 141631082 -9152471 + AluSg SINE Alu 1 310 0 1110 279 56 13 chr11 141631991 141632367 -9151186 + LTR16A LTR ERVL 32 423 -27 269 247 0 0 chr11 141632915 141632988 -9150565 + (TG)n Simple_repeat Simple_repeat 1 73 0 329 205 17 103 chr11 141633671 141633788 -9149765 + MIR3 SINE MIR 81 187 -21 2348 82 7 0 chr11 141633801 141634093 -9149460 - AluY SINE Alu -17 294 1 1444 221 4 7 chr11 141634447 141634719 -9148834 + AluJo SINE Alu 1 271 -41 576 77 0 0 chr11 141634968 141635046 -9148507 + (TG)n Simple_repeat Simple_repeat 2 79 0 282 315 45 0 chr11 141635599 141635710 -9147843 + L3 LINE CR1 1128 1243 -334 219 326 22 0 chr11 141636153 141636242 -9147311 - L3 LINE CR1 -1 1576 1486 812 250 19 14 chr11 141637640 141637852 -9145701 - MIR SINE MIR -38 224 12 196 243 27 54 chr11 141637878 141637952 -9145601 + MER5B DNA MER1_type 106 177 -1 265 200 17 17 chr11 141638007 141638067 -9145486 + MER5A DNA MER1_type 102 161 -28 877 205 128 0 chr11 141639374 141639569 -9143984 - MER58A DNA MER1_type -4 220 1 2235 99 0 3 chr11 141640394 141640703 -9142850 + AluSq SINE Alu 1 308 0 319 306 41 48 chr11 141641747 141642041 -9141512 + L1MC/D LINE L1 5289 5580 -541 2027 83 4 8 chr11 141642093 141642390 -9141163 + AluSp SINE Alu 22 317 0 22 0 0 0 chr11 141642404 141642426 -9141127 + AT_rich Low_complexity Low_complexity 1 22 0 326 197 183 21 chr11 141642602 141642744 -9140809 + L1ME4a LINE L1 5956 6120 -1 195 313 0 25 chr11 141642874 141642954 -9140599 - L2 LINE L2 -2 3311 3234 1578 195 13 44 chr11 141642967 141643285 -9140268 + AluJb SINE Alu 1 308 -4 1731 176 4 0 chr11 141643726 141644018 -9139535 - AluJo SINE Alu 0 301 9 872 189 0 30 chr11 141644105 141644269 -9139284 - FRAM SINE Alu -18 158 1 1279 169 101 53 chr11 141644289 141644420 -9139133 + L1MB8 LINE L1 5801 5924 -254 1663 160 3 31 chr11 141644420 141644736 -9138817 + AluSx SINE Alu 3 310 0 1279 169 101 53 chr11 141644736 141644958 -9138595 + L1MB8 LINE L1 5924 6172 -6 195 221 108 42 chr11 141646397 141646515 -9137038 - MIR SINE MIR -49 159 20 424 233 0 155 chr11 141646789 141646891 -9136662 - MIR SINE MIR -26 236 120 180 0 0 0 chr11 141646891 141646911 -9136642 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 424 233 0 155 chr11 141646911 141646926 -9136627 - MIR SINE MIR -142 120 104 1982 154 0 0 chr11 141646926 141647212 -9136341 - AluSx SINE Alu -24 288 3 424 233 0 155 chr11 141647212 141647299 -9136254 - MIR SINE MIR -158 104 63 458 294 33 27 chr11 141647908 141648092 -9135461 + MIR SINE MIR 8 192 -70 2320 94 3 7 chr11 141648467 141648766 -9134787 - AluSq SINE Alu -15 298 1 2281 161 50 17 chr11 141648911 141649327 -9134226 + Tigger2a DNA MER2_type 5 434 0 485 280 97 11 chr11 141649438 141649613 -9133940 + MIR SINE MIR 12 201 -61 1992 154 0 0 chr11 141649620 141649944 -9133609 + AluSx SINE Alu 1 324 0 2142 98 0 4 chr11 141650076 141650353 -9133200 + AluSp SINE Alu 1 276 -37 1049 238 108 10 chr11 141650415 141650722 -9132831 - MER58B DNA MER1_type -1 340 4 347 259 63 52 chr11 141650861 141651035 -9132518 + MLT1I LTR MaLR 2 177 -232 2446 82 0 7 chr11 141651310 141651616 -9131937 + AluSp SINE Alu 1 304 -9 2378 97 0 10 chr11 141652666 141652977 -9130576 + AluSq SINE Alu 1 308 -5 428 325 47 21 chr11 141654397 141654588 -9128965 + MIR SINE MIR 9 204 -58 298 263 200 19 chr11 141654768 141654928 -9128625 + MIR SINE MIR 74 262 0 2000 137 3 0 chr11 141658707 141658991 -9124562 + AluSx SINE Alu 1 285 -27 311 0 0 25 chr11 141658994 141659034 -9124519 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 480 273 50 70 chr11 141659859 141659992 -9123561 - MIR SINE MIR -16 246 119 2334 102 0 7 chr11 141659992 141660297 -9123256 - AluSx SINE Alu -9 303 1 480 273 50 70 chr11 141660297 141660405 -9123148 - MIR SINE MIR -143 119 10 2134 129 10 0 chr11 141660728 141661031 -9122522 + AluSx SINE Alu 1 306 -6 805 275 113 23 chr11 141661750 141662443 -9121110 + L1ME3A LINE L1 5088 5842 -328 35 0 0 0 chr11 141662502 141662537 -9121016 + AT_rich Low_complexity Low_complexity 1 35 0 2046 134 6 25 chr11 141662539 141662853 -9120700 - AluJb SINE Alu 0 312 5 202 276 133 19 chr11 141663533 141663638 -9119915 + MIR3 SINE MIR 88 204 -4 424 274 102 35 chr11 141665707 141665904 -9117649 + MIR SINE MIR 9 218 -44 2244 112 0 0 chr11 141666126 141666413 -9117140 + AluSx SINE Alu 1 287 -25 1989 139 0 3 chr11 141667277 141667572 -9115981 + AluSx SINE Alu 1 294 -18 841 167 123 0 chr11 141667844 141668006 -9115547 - MER46A DNA MER2_type -52 184 3 193 333 55 27 chr11 141668009 141668228 -9115325 + L2 LINE L2 2257 2481 -833 558 263 19 38 chr11 141668356 141668516 -9115037 - L2 LINE L2 0 3272 3116 430 309 100 19 chr11 141668823 141669033 -9114520 - MIR SINE MIR -4 258 32 406 366 61 24 chr11 141669045 141669340 -9114213 + L2 LINE L2 2964 3269 -3 1944 145 27 0 chr11 141669396 141669692 -9113861 + AluJo SINE Alu 7 310 -2 999 92 6 18 chr11 141669701 141669865 -9113688 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 260 267 13 13 chr11 141670403 141670478 -9113075 - Charlie4 DNA MER1_type -5 1956 1882 198 0 0 0 chr11 141670619 141670641 -9112912 + (A)n Simple_repeat Simple_repeat 1 22 0 2935 188 12 3 chr11 141670743 141671317 -9112236 - L1 LINE L1 -2192 3954 3376 778 224 13 6 chr11 141671317 141671473 -9112080 - ERVL LTR ERVL -5147 617 461 1703 184 7 0 chr11 141671653 141671935 -9111618 + MER49 LTR ERV1 2 285 -638 1386 141 83 102 chr11 141671965 141672327 -9111226 + MER4D LTR ERV1 549 903 0 672 257 39 19 chr11 141672366 141672623 -9110930 + L1MCc LINE L1 23 284 -6139 2060 221 64 87 chr11 141672628 141673655 -9109898 + L1MCc LINE L1 2859 3825 -3116 2626 55 0 3 chr11 141673655 141673964 -9109589 + AluY SINE Alu 1 308 -3 2060 221 64 87 chr11 141673964 141674128 -9109425 + L1MCc LINE L1 3825 3991 -2950 379 250 113 71 chr11 141674143 141674213 -9109340 + L1MCc LINE L1 1226 1292 -2010 1798 181 7 0 chr11 141674213 141674511 -9109042 + AluJb SINE Alu 1 300 -12 379 250 113 71 chr11 141674511 141675368 -9108185 + L1MCc LINE L1 1292 2112 -1190 311 89 0 71 chr11 141675368 141675424 -9108129 + L1PA10 LINE L1 6117 6168 0 379 250 113 71 chr11 141675424 141675552 -9108001 + L1MCc LINE L1 2112 3302 0 1097 240 100 35 chr11 141675761 141676132 -9107421 + MSTD LTR MaLR 2 396 0 204 40 0 0 chr11 141676369 141676394 -9107159 + (A)n Simple_repeat Simple_repeat 1 25 0 506 57 14 0 chr11 141676810 141676880 -9106673 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 180 77 0 0 chr11 141677024 141677050 -9106503 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 1709 170 0 42 chr11 141677493 141677799 -9105754 + AluJb SINE Alu 1 293 -19 614 300 88 4 chr11 141678218 141678445 -9105108 - MIR SINE MIR -16 246 1 370 266 113 11 chr11 141678506 141678660 -9104893 - MIR3 SINE MIR -4 204 37 957 221 34 0 chr11 141679263 141679467 -9104086 - LTR53 LTR ERVL -17 502 292 1814 248 156 19 chr11 141679861 141680663 -9102890 + L1MEc LINE L1 672 1583 -4813 246 176 0 0 chr11 141680712 141680763 -9102790 + (TA)n Simple_repeat Simple_repeat 2 52 0 207 204 0 0 chr11 141680816 141680865 -9102688 + (TA)n Simple_repeat Simple_repeat 2 50 0 5780 132 7 3 chr11 141681100 141682262 -9101291 + L1PA15 LINE L1 5000 6165 0 4472 115 11 38 chr11 141682262 141682950 -9100603 + L1PA16 LINE L1 5474 6157 -9 274 211 42 42 chr11 141683283 141683449 -9100104 + (TATAA)n Simple_repeat Simple_repeat 3 168 0 224 222 0 0 chr11 141683527 141683572 -9099981 - L2 LINE L2 -2921 393 349 485 105 47 0 chr11 141683764 141683850 -9099703 - L1MA3 LINE L1 0 6305 6216 198 0 0 0 chr11 141683919 141683941 -9099612 + (T)n Simple_repeat Simple_repeat 1 22 0 180 0 0 0 chr11 141684287 141684307 -9099246 + (T)n Simple_repeat Simple_repeat 1 20 0 1385 198 0 8 chr11 141684775 141685023 -9098530 - AluJo SINE Alu -25 287 42 323 301 161 36 chr11 141685181 141685460 -9098093 + L3 LINE CR1 1257 1570 -7 259 332 58 26 chr11 141685897 141686061 -9097492 - MIR SINE MIR -57 205 38 289 313 96 0 chr11 141686125 141686240 -9097313 + MIR SINE MIR 137 262 0 187 224 138 0 chr11 141686521 141686579 -9096974 - MIR3 SINE MIR -31 177 112 22 35 0 0 chr11 141686580 141686609 -9096944 + AT_rich Low_complexity Low_complexity 1 29 0 408 306 26 27 chr11 141686826 141687062 -9096491 + L1ME4a LINE L1 5648 5887 -262 204 139 0 28 chr11 141687062 141687098 -9096455 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 191 299 15 124 chr11 141688179 141688380 -9095173 - MIR3 SINE MIR -13 195 17 1218 83 61 0 chr11 141689446 141689626 -9093927 - L1PA10 LINE L1 -1 6167 5977 721 246 0 0 chr11 141689804 141689946 -9093607 + FRAM SINE Alu 1 142 -34 203 0 37 0 chr11 141689957 141689984 -9093569 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 25 31 0 0 chr11 141690107 141690139 -9093414 + AT_rich Low_complexity Low_complexity 1 32 0 2261 125 0 0 chr11 141690350 141690662 -9092891 + AluSx SINE Alu 1 312 0 25 0 0 0 chr11 141690925 141690950 -9092603 + AT_rich Low_complexity Low_complexity 1 25 0 343 279 162 26 chr11 141691066 141691220 -9092333 + MIR SINE MIR 84 258 -4 1572 316 65 20 chr11 141691406 141692261 -9091292 + L1MEc LINE L1 45 938 -5458 41 0 0 0 chr11 141692295 141692336 -9091217 + AT_rich Low_complexity Low_complexity 1 41 0 330 45 0 0 chr11 141693958 141694002 -9089551 + (CA)n Simple_repeat Simple_repeat 2 45 0 180 0 0 0 chr11 141695045 141695065 -9088488 + (T)n Simple_repeat Simple_repeat 1 20 0 279 294 54 71 chr11 141695421 141695595 -9087958 + MIR3 SINE MIR 21 191 -17 192 302 16 32 chr11 141695595 141695658 -9087895 - MER5A DNA MER1_type 0 189 128 1345 167 0 21 chr11 141695660 141695893 -9087660 + AluJb SINE Alu 85 312 0 270 81 0 0 chr11 141696125 141696162 -9087391 + (A)n Simple_repeat Simple_repeat 1 37 0 245 357 31 0 chr11 141696168 141696266 -9087287 - MER5A DNA MER1_type -77 112 12 4097 153 62 3 chr11 141696564 141697301 -9086252 + LTR39 LTR ERV1 2 782 -1 1080 101 32 0 chr11 141697339 141697497 -9086056 + MER83 LTR ERV1 1 163 -285 312 294 118 48 chr11 141697515 141697702 -9085851 + LTR4 LTR ERV1 1 200 -396 809 261 18 21 chr11 141697890 141698170 -9085383 + LTR4 LTR ERV1 318 596 0 * 1461 167 34 4 chr11 141698170 141698430 -9085123 + MER83 LTR ERV1 181 448 0 214 200 0 0 chr11 141698478 141698518 -9085035 + T-rich Low_complexity Low_complexity 1 40 0 441 179 0 0 chr11 141698641 141698725 -9084828 + A-rich Low_complexity Low_complexity 1 84 0 964 176 7 0 chr11 141698729 141698916 -9084637 + FRAM SINE Alu 1 180 0 420 101 13 13 chr11 141699244 141699323 -9084230 - L1MA9 LINE L1 0 6312 6234 1921 106 7 3 chr11 141699334 141699618 -9083935 - L1PB1 LINE L1 -307 5844 5560 5161 163 14 24 chr11 141699653 141700631 -9082922 - L1MA9 LINE L1 -76 6236 5268 1349 166 27 4 chr11 141700767 141701026 -9082527 - L1M2 LINE L1 -780 5532 5268 5939 145 13 13 chr11 141701033 141702677 -9080876 - L1PB1 LINE L1 0 6867 5231 1016 152 6 0 chr11 141702678 141702842 -9080711 - L1PB1 LINE L1 -6698 165 1 2824 179 15 84 chr11 141702843 141703629 -9079924 - L1M2 LINE L1 -882 5264 4533 751 188 6 50 chr11 141703627 141703787 -9079766 - L1M2 LINE L1 -1970 4176 4024 * 14740 129 9 17 chr11 141703787 141706122 -9077431 + L1P LINE L1 6 2321 -3825 222 171 0 0 chr11 141706381 141706422 -9077131 + T-rich Low_complexity Low_complexity 1 41 0 1790 128 58 79 chr11 141706502 141707061 -9076492 + MER51A LTR ERV1 1 634 0 1472 183 75 122 chr11 141707151 141707658 -9075895 + MER67D LTR ERV1 4 486 -28 3363 126 29 2 chr11 141707829 141708349 -9075204 + MER39B LTR ERV1 1 534 -119 564 124 21 10 chr11 141708349 141708446 -9075107 + MER4A LTR ERV1 1 98 -566 1901 148 3 22 chr11 141708446 141708798 -9074755 + MER4A LTR ERV1 261 664 0 2562 97 191 8 chr11 141708801 141709421 -9074132 + MER4A-int LTR ERV1 1 805 -5793 330 26 0 0 chr11 141709421 141709460 -9074093 + (CA)n Simple_repeat Simple_repeat 2 40 0 277 120 20 0 chr11 141709555 141709605 -9073948 + MER4A-int LTR ERV1 836 886 -5712 * 1056 81 151 0 chr11 141709603 141709788 -9073765 + MER4A-int LTR ERV1 993 1205 -5393 419 110 0 6 chr11 141709888 141710005 -9073548 + MER4A-int LTR ERV1 624 805 -5793 330 26 0 0 chr11 141710005 141710044 -9073509 + (CA)n Simple_repeat Simple_repeat 2 40 0 322 126 8 56 chr11 141710049 141710189 -9073364 + MER4A-int LTR ERV1 688 886 -5712 * 7969 115 64 16 chr11 141710187 141711621 -9071932 + MER4A-int LTR ERV1 993 2495 -4103 1235 163 79 8 chr11 141711621 141711861 -9071692 - LTR8 LTR ERV1 -434 257 1 412 88 0 0 chr11 141711861 141711929 -9071624 + MER4A-int LTR ERV1 1862 1929 -3086 * 2953 144 87 25 chr11 141711927 141712602 -9070951 + MER4A-int LTR ERV1 2948 3664 -2934 16582 95 45 22 chr11 141712602 141715286 -9068267 + MER4A-int LTR ERV1 3849 6596 -2 451 172 32 11 chr11 141715295 141715388 -9068165 + MER4A LTR ERV1 4 98 -566 1736 153 20 22 chr11 141715388 141715734 -9067819 + MER4A LTR ERV1 261 664 0 701 160 76 0 chr11 141715734 141715848 -9067705 + LTR49 LTR ERV1 470 593 -2 407 305 47 30 chr11 141715973 141716334 -9067219 - L1M4 LINE L1 -812 5334 4968 966 165 81 37 chr11 141716386 141716659 -9066894 - LTR54B LTR ERV1 -1 497 213 198 0 0 0 chr11 141717655 141717677 -9065876 + (T)n Simple_repeat Simple_repeat 1 22 0 2165 100 3 7 chr11 141717726 141718016 -9065537 + AluSg SINE Alu 1 289 -21 244 299 36 27 chr11 141718048 141718269 -9065284 - L1MEc LINE L1 -3626 2503 2281 445 290 24 43 chr11 141718287 141718494 -9065059 - L1MEc LINE L1 -4048 2262 2060 180 0 0 0 chr11 141718495 141718515 -9065038 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 363 288 186 9 chr11 141718767 141719090 -9064463 - L1MEc LINE L1 -4681 1629 1250 2190 163 57 26 chr11 141719090 141719747 -9063806 - MER39 LTR ERV1 0 707 1 810 208 115 0 chr11 141719862 141720054 -9063499 + MER58A DNA MER1_type 10 223 -1 944 306 111 58 chr11 141720056 141721096 -9062457 - L1MEc LINE L1 -5017 1102 8 239 314 6 13 chr11 141721102 141721258 -9062295 + L1MC4a LINE L1 5128 5282 -864 1959 138 0 0 chr11 141721274 141721556 -9061997 - AluSx SINE Alu -30 282 1 322 345 34 19 chr11 141721699 141721963 -9061590 + L1MC4a LINE L1 5642 5909 -1899 2162 164 33 43 chr11 141721993 141722415 -9061138 - MER4E LTR ERV1 0 779 362 281 0 0 0 chr11 141722421 141722452 -9061101 + U2 snRNA snRNA 5 35 -153 1277 113 72 5 chr11 141722511 141722706 -9060847 - MER4B LTR ERV1 -402 208 1 1948 112 56 0 chr11 141722989 141723275 -9060278 - AluSx SINE Alu -10 302 1 33 43 0 0 chr11 141723389 141723436 -9060117 + AT_rich Low_complexity Low_complexity 1 47 0 458 138 0 0 chr11 141723810 141723875 -9059678 + AluS SINE Alu 1 65 -247 3229 103 33 6 chr11 141723912 141724395 -9059158 + LOR1a LTR ERV1 2 497 0 2118 120 30 0 chr11 141725173 141725473 -9058080 + AluSq SINE Alu 1 309 -4 344 302 134 20 chr11 141725708 141725857 -9057696 + MIR3 SINE MIR 19 184 -24 2119 117 3 0 chr11 141726872 141727163 -9056390 + AluSx SINE Alu 7 298 -14 24 67 0 0 chr11 141727353 141727398 -9056155 + AT_rich Low_complexity Low_complexity 1 45 0 1116 169 121 132 chr11 141727930 141728368 -9055185 + LTR49 LTR ERV1 5 437 -158 335 192 185 46 chr11 141728352 141728482 -9055071 + LTR48 LTR ERV1 607 754 -33 * 2139 122 51 20 chr11 141728920 141729273 -9054280 + THE1B LTR MaLR 1 364 0 746 212 0 0 chr11 141729588 141729720 -9053833 + FLAM_C SINE Alu 1 132 -1 2721 137 60 19 chr11 141729730 141729966 -9053587 + MER39B LTR ERV1 12 237 -416 2148 127 0 3 chr11 141729966 141730266 -9053287 + AluSx SINE Alu 1 299 -13 2721 137 60 19 chr11 141730266 141730498 -9053055 + MER39B LTR ERV1 237 499 -154 800 210 7 0 chr11 141730525 141730663 -9052890 + AluJb SINE Alu 146 284 -28 556 161 127 0 chr11 141730681 141730799 -9052754 + MER39B LTR ERV1 521 653 0 1618 182 18 68 chr11 141731086 141731239 -9052314 + MLT1A1 LTR MaLR 1 160 -205 1402 70 0 10 chr11 141731239 141731439 -9052114 + L1MA5A LINE L1 6094 6291 -6 1618 182 18 68 chr11 141731439 141731669 -9051884 + MLT1A1 LTR MaLR 160 365 0 1992 143 49 22 chr11 141732103 141732468 -9051085 + THE1C LTR MaLR 1 375 0 742 261 54 10 chr11 141732590 141732793 -9050760 + MIR SINE MIR 44 255 -7 3304 168 53 22 chr11 141733316 141733952 -9049601 - MER67C LTR ERV1 -52 658 3 314 327 39 10 chr11 141733975 141734079 -9049474 - MER69 DNA AcHobo -2052 474 368 2176 85 154 54 chr11 141734278 141734490 -9049063 - MSTA LTR MaLR 0 428 239 2124 115 7 3 chr11 141734490 141734786 -9048767 - AluSx SINE Alu -15 297 1 2176 85 154 54 chr11 141734786 141734962 -9048591 - MSTA LTR MaLR -189 239 1 2506 68 0 0 chr11 141735725 141736033 -9047520 - AluY SINE Alu -3 308 1 1915 279 73 77 chr11 141736434 141737160 -9046393 + L1MEc LINE L1 73 800 -5596 1738 194 0 3 chr11 141737160 141737454 -9046099 - AluJo SINE Alu -19 293 1 1915 279 73 77 chr11 141737454 141738492 -9045061 + L1MEc LINE L1 800 1830 -4566 265 162 44 0 chr11 141738487 141738555 -9044998 - L1MA10 LINE L1 -2 6332 6262 * 260 313 10 0 chr11 141738683 141738779 -9044774 - L1M4c LINE L1 -4920 1464 1368 4434 181 21 76 chr11 141738785 141739000 -9044553 - L1MA10 LINE L1 -70 6264 6039 1170 94 6 0 chr11 141739000 141739159 -9044394 - U1 snRNA snRNA -2 163 4 4434 181 21 76 chr11 141739159 141740012 -9043541 - L1MA10 LINE L1 -295 6039 5254 2494 151 16 39 chr11 141740016 141740452 -9043101 + MSTB LTR MaLR 1 426 0 3578 202 9 0 chr11 141740452 141741140 -9042413 + MSTB-int LTR MaLR 1 694 -957 1837 104 0 0 chr11 141741151 141741391 -9042162 - AluY SINE Alu -71 240 1 1808 141 11 0 chr11 141741397 141741666 -9041887 - AluJo SINE Alu -21 291 20 1775 238 37 10 chr11 141741694 141742210 -9041343 + L1ME1 LINE L1 5282 5811 -353 225 0 0 0 chr11 141742211 141742236 -9041317 + (T)n Simple_repeat Simple_repeat 1 25 0 1552 201 4 0 chr11 141742420 141742699 -9040854 - AluJb SINE Alu -29 283 4 1180 240 16 36 chr11 141742701 141743064 -9040489 + L1ME1 LINE L1 5801 6156 -10 2671 17 0 7 chr11 141743241 141743540 -9040013 - AluYb8 SINE Alu -6 312 16 192 77 0 0 chr11 141744664 141744690 -9038863 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 689 262 60 30 chr11 141745326 141745559 -9037994 + LTR16A LTR ERVL 202 441 -9 415 258 350 0 chr11 141745591 141745754 -9037799 - MIR SINE MIR -27 235 16 246 229 24 12 chr11 141746384 141746467 -9037086 + L1M4 LINE L1 5150 5233 -913 446 139 0 0 chr11 141746472 141746544 -9037009 - MER21-int LTR ERV1 -237 3954 3883 342 0 0 0 chr11 141747144 141747182 -9036371 + (TG)n Simple_repeat Simple_repeat 2 39 0 820 105 19 43 chr11 141747313 141747475 -9036078 - LTR7 LTR ERV1 0 450 293 4562 93 15 1 chr11 141747581 141748266 -9035287 - L1P LINE L1 -1200 4946 4253 2692 134 23 18 chr11 141748266 141748700 -9034853 + MER4E LTR ERV1 340 775 -4 245 282 84 14 chr11 141748737 141748808 -9034745 - MIR SINE MIR -151 111 36 4983 162 35 13 chr11 141750461 141750507 -9033046 - Tigger2 DNA MER2_type -1795 923 879 1968 148 0 7 chr11 141750507 141750811 -9032742 - AluSq SINE Alu -6 307 6 4983 162 35 13 chr11 141750811 141751667 -9031886 - Tigger2 DNA MER2_type -1839 879 1 5438 216 108 33 chr11 141751673 141752925 -9030628 + L1MC1 LINE L1 3030 4186 -2147 479 83 0 28 chr11 141752925 141752997 -9030556 - MADE1 DNA Mariner -6 74 5 5438 216 108 33 chr11 141752997 141754306 -9029247 + L1MC1 LINE L1 4186 5855 -478 25 31 0 0 chr11 141754776 141754808 -9028745 + AT_rich Low_complexity Low_complexity 1 32 0 237 65 0 0 chr11 141756082 141756113 -9027440 + (A)n Simple_repeat Simple_repeat 1 31 0 415 258 350 0 chr11 141758364 141758527 -9025026 + MIR SINE MIR 16 235 -27 686 269 56 30 chr11 141758559 141758793 -9024760 - LTR16A LTR ERVL -9 441 202 306 275 0 0 chr11 141759567 141759636 -9023917 - L2 LINE L2 -1385 1929 1861 245 196 39 0 chr11 141759749 141759800 -9023753 - L1MC5 LINE L1 -67 7894 7842 379 306 143 53 chr11 141759918 141760349 -9023204 - L1 LINE L1 -2889 3257 2768 2020 139 0 0 chr11 141760349 141760659 -9022894 + AluSx SINE Alu 2 311 0 379 306 143 53 chr11 141760659 141760749 -9022804 - L1 LINE L1 -3378 2768 2688 285 328 89 38 chr11 141760925 141761474 -9022079 - L1M4 LINE L1 -1779 4367 3791 27 29 0 0 chr11 141761798 141761832 -9021721 + AT_rich Low_complexity Low_complexity 1 34 0 3178 235 25 26 chr11 141761942 141762816 -9020737 - L1ME1 LINE L1 -5 6161 5289 242 122 0 41 chr11 141762937 141762986 -9020567 + (TATG)n Simple_repeat Simple_repeat 4 50 0 333 309 40 6 chr11 141764188 141764363 -9019190 + L1M4 LINE L1 5217 5397 -749 2452 97 0 0 chr11 141764458 141764766 -9018787 + AluSc SINE Alu 1 308 -1 247 353 93 13 chr11 141765064 141765214 -9018339 + MIR3 SINE MIR 46 207 -1 209 394 141 0 chr11 141765530 141765629 -9017924 + L2 LINE L2 3116 3228 -44 24 0 0 0 chr11 141766496 141766520 -9017033 + AT_rich Low_complexity Low_complexity 1 24 0 834 199 0 70 chr11 141766568 141766754 -9016799 + FAM SINE Alu 1 173 -2 2738 169 41 5 chr11 141767063 141767941 -9015612 + L1MC/D LINE L1 4784 5693 -643 3203 148 29 55 chr11 141768473 141768618 -9014935 + L1MA5 LINE L1 5632 5779 -521 219 69 0 0 chr11 141768618 141768647 -9014906 + (TA)n Simple_repeat Simple_repeat 1 29 0 3203 148 29 55 chr11 141768647 141769188 -9014365 + L1MA5 LINE L1 5779 6300 0 197 346 0 37 chr11 141769195 141769276 -9014277 - MIR SINE MIR -73 135 58 1955 164 0 35 chr11 141769830 141770177 -9013376 + MER7A DNA MER2_type 14 346 0 290 290 36 36 chr11 141770696 141770834 -9012719 + MER5A DNA MER1_type 48 185 -4 299 392 39 15 chr11 141771281 141771485 -9012068 + MIR SINE MIR 24 232 -30 306 164 0 0 chr11 141771511 141771566 -9011987 + (TG)n Simple_repeat Simple_repeat 2 56 0 233 306 181 7 chr11 141774538 141774682 -9008871 - MIR SINE MIR -11 251 83 627 154 169 18 chr11 141774818 141774984 -9008569 + MER33 DNA MER1_type 1 183 -101 1748 167 33 12 chr11 141775009 141775339 -9008214 - MER2 DNA MER2_type 0 345 9 392 260 8 8 chr11 141775344 141775471 -9008082 + MER33 DNA MER1_type 237 363 0 415 239 15 8 chr11 141776111 141776217 -9007336 - MER5A DNA MER1_type -80 109 3 2644 108 54 3 chr11 141777753 141778140 -9005413 + MER83 LTR ERV1 1 407 -41 2148 116 7 7 chr11 141779497 141779800 -9003753 + AluSq SINE Alu 3 305 -8 22 0 0 0 chr11 141779902 141779924 -9003629 + AT_rich Low_complexity Low_complexity 1 22 0 622 290 116 88 chr11 141780514 141781311 -9002242 - L2 LINE L2 0 3313 2481 25 51 0 0 chr11 141781315 141781354 -9002199 + AT_rich Low_complexity Low_complexity 1 39 0 14362 157 31 12 chr11 141782251 141789750 -8993803 + L1MA2 LINE L1 16 7723 0 35 0 0 0 chr11 141789846 141789881 -8993672 + AT_rich Low_complexity Low_complexity 1 35 0 604 322 71 26 chr11 141790136 141790599 -8992954 + L1MEc LINE L1 35 518 -5878 233 280 91 14 chr11 141790927 141791070 -8992483 + L1 LINE L1 3635 3788 -2358 1559 115 46 8 chr11 141791160 141791420 -8992133 - L1PB1 LINE L1 0 6151 5882 753 200 0 15 chr11 141791863 141791998 -8991555 - FLAM_C SINE Alu 0 133 1 198 0 0 0 chr11 141792010 141792032 -8991521 + (T)n Simple_repeat Simple_repeat 1 22 0 237 331 16 0 chr11 141797460 141797584 -8985969 + (TA)n Simple_repeat Simple_repeat 2 127 0 262 337 12 0 chr11 141798648 141798731 -8984822 + MIR SINE MIR 50 133 -75 279 313 114 0 chr11 141799261 141799392 -8984161 - MIR SINE MIR -36 226 81 192 355 26 13 chr11 141799400 141799476 -8984077 - MIR SINE MIR -147 115 39 30 27 0 0 chr11 141799680 141799717 -8983836 + AT_rich Low_complexity Low_complexity 1 37 0 339 298 37 43 chr11 141800122 141800283 -8983270 - MIR SINE MIR -56 206 47 734 201 0 21 chr11 141800587 141800731 -8982822 + MER3 DNA MER1_type 7 147 -62 5023 139 16 17 chr11 141800810 141802045 -8981508 - L1MA7 LINE L1 -179 6112 4874 422 295 154 46 chr11 141802123 141802362 -8981191 - L1M4 LINE L1 -2921 3225 3013 1774 144 70 0 chr11 141802362 141802647 -8980906 - AluJo SINE Alu -7 305 1 422 295 154 46 chr11 141802647 141802990 -8980563 - L1M4 LINE L1 -3133 3013 2580 356 277 20 0 chr11 141803419 141803520 -8980033 + L1M4 LINE L1 3317 3419 -2727 733 145 38 0 chr11 141804490 141804621 -8978932 - L1MA7 LINE L1 -9 6282 6147 488 65 22 33 chr11 141804719 141804811 -8978742 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 2261 104 0 0 chr11 141804816 141805114 -8978439 - AluSg SINE Alu -12 298 1 710 193 0 15 chr11 141805116 141805251 -8978302 - FLAM_A SINE Alu 0 133 1 1303 285 161 22 chr11 141805256 141805587 -8977966 - HAL1 LINE L1 -760 1747 1464 180 0 0 0 chr11 141805587 141805607 -8977946 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1924 122 0 18 chr11 141805610 141805889 -8977664 - AluSx SINE Alu -36 276 3 1303 285 161 22 chr11 141805889 141806426 -8977127 - HAL1 LINE L1 -1044 1463 753 470 290 65 55 chr11 141806862 141807062 -8976491 + MIR SINE MIR 23 224 -38 24 103 0 0 chr11 141807065 141807152 -8976401 + AT_rich Low_complexity Low_complexity 1 87 0 563 228 109 62 chr11 141807158 141807496 -8976057 - L1M4 LINE L1 -1637 4509 4156 629 299 76 10 chr11 141807501 141807802 -8975751 - L1M4 LINE L1 -2042 4104 3784 9784 198 31 23 chr11 141807815 141810612 -8972941 - L1MC3 LINE L1 -471 7594 4821 357 57 0 0 chr11 141810612 141810665 -8972888 - L1MA3 LINE L1 -7 6298 6246 9784 198 31 23 chr11 141810665 141810783 -8972770 - L1MC3 LINE L1 -3244 4821 4656 1331 231 7 11 chr11 141810783 141811089 -8972464 - AluJb SINE Alu 0 305 1 9784 198 31 23 chr11 141811089 141811128 -8972425 - L1MC3 LINE L1 -3409 4656 4619 290 310 18 35 chr11 141811130 141811243 -8972310 - MER41E LTR ERV1 0 512 402 425 297 21 0 chr11 141811243 141811388 -8972165 - L1MC3 LINE L1 -2085 4341 4194 448 284 42 29 chr11 141811403 141811642 -8971911 - MER41E LTR ERV1 -105 407 166 5193 267 26 11 chr11 141811795 141813255 -8970298 - L1M4 LINE L1 -1823 4323 2831 1887 167 7 0 chr11 141813255 141813555 -8969998 - AluJo SINE Alu -10 302 1 5193 267 26 11 chr11 141813555 141813859 -8969694 - L1M4 LINE L1 -3315 2831 2533 2269 219 17 16 chr11 141813860 141814440 -8969113 - L1M4 LINE L1 -1144 5002 4422 495 257 20 7 chr11 141814439 141814587 -8968966 - L1MC3 LINE L1 -6247 179 30 * 1843 138 69 36 chr11 141814781 141815144 -8968409 - THE1C LTR MaLR 0 375 1 333 273 0 0 chr11 141815249 141815315 -8968238 + L2 LINE L2 3206 3271 -1 26 0 0 0 chr11 141815522 141815548 -8968005 + AT_rich Low_complexity Low_complexity 1 26 0 1652 118 12 97 chr11 141815821 141816160 -8967393 - AluY SINE Alu -1 310 1 562 287 90 14 chr11 141818347 141818570 -8964983 - MIR SINE MIR -1 261 22 471 335 78 75 chr11 141818680 141819214 -8964339 + L2 LINE L2 2692 3234 -38 413 325 18 6 chr11 141819214 141819383 -8964170 - MER96 DNA MER1_type -4 171 1 471 335 78 75 chr11 141819383 141819421 -8964132 + L2 LINE L2 3234 3270 -2 231 363 0 18 chr11 141821349 141821462 -8962091 - MIR SINE MIR -119 143 33 355 321 193 14 chr11 141823228 141823440 -8960113 - MIR SINE MIR -1 261 12 1935 121 23 16 chr11 141823860 141824167 -8959386 - AluSc SINE Alu 0 309 1 303 351 26 19 chr11 141824684 141824838 -8958715 + MER5A DNA MER1_type 35 189 0 27 29 0 0 chr11 141825534 141825568 -8957985 + AT_rich Low_complexity Low_complexity 1 34 0 234 204 91 23 chr11 141827375 141827463 -8956090 - L1MC4 LINE L1 -1335 6707 6614 350 157 52 0 chr11 141827578 141827656 -8955897 + MIR SINE MIR 83 170 -38 13508 149 7 7 chr11 141829251 141831539 -8952014 + L1PA10 LINE L1 2367 4653 -1493 6356 89 4 11 chr11 141831541 141832897 -8950656 + L1PA10 LINE L1 4813 6164 -4 3552 264 100 21 chr11 141832991 141834162 -8949391 + L1M3c LINE L1 1 1263 -4878 * 11932 205 29 11 chr11 141834157 141837918 -8945635 - L1PA15 LINE L1 -328 5837 2012 22 0 0 0 chr11 141837918 141837940 -8945613 + AT_rich Low_complexity Low_complexity 1 22 0 888 196 78 6 chr11 141837948 141838284 -8945269 + L1MD1 LINE L1 5825 6235 -7 2173 250 97 34 chr11 141838465 141839786 -8943767 + L1ME LINE L1 1296 2735 -3894 348 226 28 0 chr11 141839799 141839905 -8943648 - L1ME LINE L1 -861 5679 5571 * 1326 234 17 17 chr11 141839902 141840257 -8943296 + L1ME LINE L1 5674 6028 -532 1845 240 67 20 chr11 141840370 141841211 -8942342 + L1ME LINE L1 4900 5783 -383 409 275 42 6 chr11 141841270 141841437 -8942116 - L1MCa LINE L1 -5179 1247 1075 4081 183 52 21 chr11 141841438 141842343 -8941210 - L1MA10 LINE L1 -2 7292 6360 334 109 0 0 chr11 141842369 141842415 -8941138 - tRNA-Gln-CAG tRNA tRNA -29 46 1 2846 226 72 51 chr11 141842420 141843249 -8940304 - MER21B LTR ERV1 -16 847 1 364 215 86 0 chr11 141843256 141843349 -8940204 - L1MA10 LINE L1 -930 6364 6264 * 9743 44 9 12 chr11 141843347 141844608 -8938945 - L1P LINE L1 -2954 3192 1935 7594 41 8 0 chr11 141844608 141846308 -8937245 + L1PA5 LINE L1 4446 6153 -1 8358 198 48 32 chr11 141846349 141848212 -8935341 - L1MA10 LINE L1 -830 6276 4372 1559 201 3 3 chr11 141848212 141848505 -8935048 - AluJb SINE Alu -19 293 1 8358 198 48 32 chr11 141848505 141848813 -8934740 - L1MA10 LINE L1 -2734 4372 4070 821 244 131 7 chr11 141848813 141849087 -8934466 - L1MA10 LINE L1 -6627 403 96 301 127 32 0 chr11 141849087 141849150 -8934403 + L1MD1 LINE L1 6171 6235 -7 535 264 32 36 chr11 141849155 141849375 -8934178 + L1MEc LINE L1 1631 1849 -4547 1667 123 0 19 chr11 141849382 141849642 -8933911 - L1PA15 LINE L1 -3 6162 5908 228 137 0 0 chr11 141849692 141849743 -8933810 + (TA)n Simple_repeat Simple_repeat 2 52 0 1128 108 6 17 chr11 141849746 141849922 -8933631 - L1PA15 LINE L1 -263 5902 5729 28 29 0 0 chr11 141849929 141849964 -8933589 + AT_rich Low_complexity Low_complexity 1 35 0 1847 226 52 8 chr11 141850064 141850587 -8932966 + L1M4 LINE L1 3546 4091 -2055 213 39 0 0 chr11 141850673 141850699 -8932854 + (TG)n Simple_repeat Simple_repeat 2 27 0 247 332 109 14 chr11 141852447 141852658 -8930895 + MIR SINE MIR 31 261 -1 389 272 74 43 chr11 141853702 141853864 -8929689 - MIR3 SINE MIR -8 200 34 2665 167 37 74 chr11 141856084 141856654 -8926899 - MER52A LTR ERV1 0 1755 1207 2373 180 245 66 chr11 141856762 141857457 -8926096 - MER52A LTR ERV1 -412 1343 525 23567 165 13 30 chr11 141857457 141862594 -8920959 - L1P3 LINE L1 -1080 5381 2 445 181 29 29 chr11 141862595 141862700 -8920853 + L1MB7 LINE L1 5583 5687 -497 776 169 0 15 chr11 141862708 141862838 -8920715 + FLAM_C SINE Alu 1 128 -15 1528 214 107 5 chr11 141862857 141863259 -8920294 + L1MB7 LINE L1 5680 6122 -62 225 259 97 12 chr11 141863457 141863569 -8919984 + MIR SINE MIR 16 139 -69 21 57 0 0 chr11 141864073 141864108 -8919445 + AT_rich Low_complexity Low_complexity 1 35 0 3251 18 18 0 chr11 141864566 141864947 -8918606 + L1PA3 LINE L1 5768 6155 0 7607 22 7 0 chr11 141865261 141866294 -8917259 + L1PA3 LINE L1 5115 6153 -2 27 29 0 0 chr11 141866430 141866464 -8917089 + AT_rich Low_complexity Low_complexity 1 34 0 441 276 158 7 chr11 141867164 141867316 -8916237 - MER5A DNA MER1_type -6 183 9 207 264 14 135 chr11 141867545 141867693 -8915860 + MIR3 SINE MIR 15 144 -64 1505 161 0 4 chr11 141868181 141868441 -8915112 - Tigger5 DNA MER2_type -3 2320 2062 230 154 0 26 chr11 141868447 141868486 -8915067 - Tigger5 DNA MER2_type -2285 38 1 269 290 70 20 chr11 141868544 141868644 -8914909 - MIR3 SINE MIR -1 207 103 288 242 84 11 chr11 141870921 141871016 -8912537 + MIR SINE MIR 91 192 -70 575 14 0 14 chr11 141872455 141872528 -8911025 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 294 217 0 0 chr11 141873130 141873199 -8910354 + (TCCA)n Simple_repeat Simple_repeat 4 72 0 344 247 13 0 chr11 141873304 141873381 -8910172 + MIR SINE MIR 123 200 -62 2282 88 7 0 chr11 141873680 141873975 -8909578 - AluSc SINE Alu -12 297 1 353 253 33 0 chr11 141874266 141874357 -8909196 + MER81 DNA DNA 21 114 0 248 288 59 51 chr11 141875033 141875151 -8908402 + MIR3 SINE MIR 51 169 -39 234 250 12 107 chr11 141876611 141876695 -8906858 - MIR SINE MIR -62 146 71 459 202 0 0 chr11 141877896 141877995 -8905558 + GA-rich Low_complexity Low_complexity 2 100 0 2279 91 0 0 chr11 141879577 141879864 -8903689 - AluSc SINE Alu -22 287 1 3509 97 0 12 chr11 141880247 141880765 -8902788 - L1MA1 LINE L1 -104 6198 5687 714 326 55 14 chr11 141881556 141881900 -8901653 + ERVL LTR ERVL 2071 2428 -3336 223 122 0 49 chr11 141882075 141882116 -8901437 + (CATA)n Simple_repeat Simple_repeat 2 40 0 9759 90 20 1 chr11 141882281 141883584 -8899969 - HERVL LTR ERVL -992 4662 3336 592 62 0 31 chr11 141884649 141884745 -8898808 + (TAGA)n Simple_repeat Simple_repeat 2 94 0 443 248 23 30 chr11 141885876 141886009 -8897544 - MIR SINE MIR -12 250 119 1131 272 131 35 chr11 141886081 141886622 -8896931 + MLT1E LTR MaLR 1 593 0 186 43 0 0 chr11 141886686 141886709 -8896844 + (GA)n Simple_repeat Simple_repeat 2 24 0 31 26 0 0 chr11 141887598 141887636 -8895917 + AT_rich Low_complexity Low_complexity 1 38 0 402 262 83 18 chr11 141887949 141888117 -8895436 + L1ME3A LINE L1 5659 5837 -333 602 283 91 0 chr11 141888201 141888388 -8895165 + MER20 DNA MER1_type 16 219 0 735 294 63 21 chr11 141888397 141888954 -8894599 + L1M4 LINE L1 4421 5000 -1146 21 36 0 0 chr11 141889200 141889228 -8894325 + AT_rich Low_complexity Low_complexity 1 28 0 1153 75 0 0 chr11 141891680 141891827 -8891726 - L1P LINE L1 -5917 229 83 907 280 80 26 chr11 141892021 141892552 -8891001 + MLT1E LTR MaLR 1 593 0 215 227 0 0 chr11 141892571 141892615 -8890938 + (TG)n Simple_repeat Simple_repeat 1 44 0 227 291 15 22 chr11 141894204 141894338 -8889215 + (TA)n Simple_repeat Simple_repeat 1 133 0 249 198 37 49 chr11 141894408 141894489 -8889064 + L1ME LINE L1 5762 5841 -329 696 204 133 6 chr11 141894579 141894760 -8888793 + MER20 DNA MER1_type 13 216 -3 984 299 36 17 chr11 141894871 141895346 -8888207 + L1ME LINE L1 4532 5015 -1131 22 35 0 0 chr11 141895406 141895435 -8888118 + AT_rich Low_complexity Low_complexity 1 29 0 5476 89 5 3 chr11 141895435 141896202 -8887351 - L1PA7 LINE L1 0 6154 5386 1905 139 0 0 chr11 141896585 141896895 -8886658 - AluJb SINE Alu 0 320 11 377 277 15 8 chr11 141899172 141899302 -8884251 - MIR SINE MIR -13 249 119 1518 242 143 27 chr11 141899410 141899951 -8883602 + MLT1E LTR MaLR 1 555 0 549 0 0 0 chr11 141900007 141900068 -8883485 + (GA)n Simple_repeat Simple_repeat 2 62 0 23 0 0 0 chr11 141901414 141901437 -8882116 + AT_rich Low_complexity Low_complexity 1 23 0 302 272 44 38 chr11 141901758 141901916 -8881637 + L1ME LINE L1 5683 5841 -329 792 180 131 0 chr11 141902005 141902188 -8881365 + MER20 DNA MER1_type 13 219 0 767 323 52 2 chr11 141902300 141902740 -8880813 + L1M4 LINE L1 4532 4993 -1153 24 53 0 0 chr11 141902826 141902864 -8880689 + AT_rich Low_complexity Low_complexity 1 38 0 1781 155 11 3 chr11 141903229 141903513 -8880040 - AluJb SINE Alu -23 289 4 529 256 0 0 chr11 141905824 141905953 -8877600 - MIR SINE MIR -12 250 122 1361 269 121 31 chr11 141906063 141906584 -8876969 + MLT1E LTR MaLR 1 568 -25 2878 158 39 1 chr11 141907788 141908487 -8875066 - L1P5 LINE L1 -404 5752 5021 1114 237 50 50 chr11 141908491 141908908 -8874645 - L1MCb LINE L1 -5057 988 572 286 243 0 14 chr11 141909134 141909204 -8874349 - L1MCb LINE L1 -5938 626 558 21 0 0 0 chr11 141909204 141909225 -8874328 + AT_rich Low_complexity Low_complexity 1 21 0 319 271 39 0 chr11 141909332 141909461 -8874092 - L1MEc LINE L1 -3742 2473 2340 327 25 0 0 chr11 141909462 141909502 -8874051 + (TG)n Simple_repeat Simple_repeat 2 41 0 321 319 89 66 chr11 141909614 141910143 -8873410 - L1MEc LINE L1 -4168 2228 1688 321 26 0 0 chr11 141910254 141910292 -8873261 + (TC)n Simple_repeat Simple_repeat 2 39 0 1165 22 0 0 chr11 141910299 141910434 -8873119 - L1PA5 LINE L1 -12 6142 6008 1475 40 0 0 chr11 141910434 141910608 -8872945 + L1PA5 LINE L1 5830 6003 -151 2064 278 64 16 chr11 141910670 141911986 -8871567 - L1ME1 LINE L1 -5 6230 4855 1069 183 30 26 chr11 141913245 141913475 -8870078 + L1MD2 LINE L1 6105 6335 -24 21 95 0 0 chr11 141914265 141914328 -8869225 + AT_rich Low_complexity Low_complexity 1 63 0 22 0 0 0 chr11 141914570 141914592 -8868961 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr11 141916349 141916374 -8867179 + AT_rich Low_complexity Low_complexity 1 25 0 256 284 0 12 chr11 141916621 141916702 -8866851 + (CA)n Simple_repeat Simple_repeat 1 80 0 1512 158 79 52 chr11 141916893 141917221 -8866332 + MER1B DNA MER1_type 1 337 0 2813 252 42 39 chr11 141919884 141919923 -8863630 - L1ME1 LINE L1 -1447 4768 4731 2282 71 7 0 chr11 141919923 141920227 -8863326 + AluY SINE Alu 1 306 0 2813 252 42 39 chr11 141920227 141921311 -8862242 - L1ME1 LINE L1 -1484 4731 3641 486 290 85 54 chr11 141921325 141921584 -8861969 - L1ME1 LINE L1 -6085 311 45 240 314 115 62 chr11 141921697 141921918 -8861635 - L1ME3 LINE L1 -81 6081 5873 440 145 13 0 chr11 141921918 141921994 -8861559 + MADE1 DNA Mariner 4 80 0 240 314 115 62 chr11 141921994 141922304 -8861249 - L1ME3 LINE L1 -289 5873 5522 488 258 113 36 chr11 141922340 141922969 -8860584 - L1ME3 LINE L1 -721 5443 4752 2803 160 15 14 chr11 141923395 141924061 -8859492 + L1MA5 LINE L1 5543 6292 -8 1226 88 22 0 chr11 141924743 141924925 -8858628 - L1MA3 LINE L1 0 6305 6120 3679 127 22 8 chr11 141925011 141925608 -8857945 - L1PB2 LINE L1 -4 6147 5543 958 145 0 13 chr11 141926584 141926736 -8856817 - FAM SINE Alu -1 48 1 2516 61 0 0 chr11 141926737 141927033 -8856520 - AluY SINE Alu -15 296 1 548 243 90 11 chr11 141927138 141927315 -8856238 - MIR SINE MIR -6 256 66 2143 121 0 16 chr11 141927461 141927768 -8855785 - AluSx SINE Alu -10 302 1 189 0 0 0 chr11 141928190 141928211 -8855342 + (TG)n Simple_repeat Simple_repeat 2 22 0 1172 235 25 42 chr11 141928655 141929055 -8854498 + L1MB7 LINE L1 5783 6175 -9 221 308 28 28 chr11 141929617 141929724 -8853829 + L2 LINE L2 2619 2725 -589 1496 85 22 22 chr11 141929788 141930011 -8853542 + L1PA8A LINE L1 5909 6131 0 1531 194 0 75 chr11 141931056 141931391 -8852162 - AluJb SINE Alu 0 312 3 24 32 0 0 chr11 141931645 141931676 -8851877 + AT_rich Low_complexity Low_complexity 1 31 0 270 232 33 33 chr11 141931793 141931894 -8851659 - MIR SINE MIR -45 163 63 434 311 83 6 chr11 141933044 141933224 -8850329 - MIR SINE MIR -28 234 41 2178 121 3 6 chr11 141933430 141933743 -8849810 + AluSx SINE Alu 1 312 0 358 208 79 10 chr11 141933957 141934058 -8849495 - L1ME4a LINE L1 -38 6083 5976 200 130 22 0 chr11 141934135 141934181 -8849372 + (TA)n Simple_repeat Simple_repeat 2 48 0 9994 231 54 22 chr11 141934265 141934822 -8848731 - L1MB8 LINE L1 0 6989 6451 1815 79 0 32 chr11 141934822 141935075 -8848478 - AluY SINE Alu -8 303 59 9994 231 54 22 chr11 141935075 141938038 -8845515 - L1MB8 LINE L1 -538 6451 3329 2099 129 0 3 chr11 141938038 141938332 -8845221 - AluSg SINE Alu -17 293 1 9994 231 54 22 chr11 141938332 141939076 -8844477 - L1MB8 LINE L1 -3660 3329 2610 1161 111 12 0 chr11 141939139 141939310 -8844243 - L1PA11 LINE L1 0 6174 6002 1943 243 65 42 chr11 141939642 141941072 -8842481 - L1MB8 LINE L1 -4543 2416 901 1855 312 60 24 chr11 141941080 141941750 -8841803 - L1MB8 LINE L1 -6155 704 11 357 309 75 8 chr11 141941780 141942032 -8841521 - L1ME LINE L1 -301 5820 5552 782 259 0 0 chr11 141942550 141942716 -8840837 - FRAM SINE Alu 0 166 1 259 224 47 65 chr11 141943848 141943955 -8839598 + MLT1J2 LTR MaLR 109 213 -237 286 277 11 11 chr11 141944011 141944105 -8839448 + MLT1I LTR MaLR 316 409 0 3886 137 33 75 chr11 141946684 141947503 -8836050 - LTR1 LTR ERV1 0 785 1 1752 180 18 0 chr11 141947763 141948046 -8835507 - AluJb SINE Alu -24 288 1 26 0 0 0 chr11 141948139 141948165 -8835388 + AT_rich Low_complexity Low_complexity 1 26 0 294 29 0 0 chr11 141948248 141948283 -8835270 + (TG)n Simple_repeat Simple_repeat 1 35 0 462 309 24 42 chr11 141948398 141948566 -8834987 + MIR3 SINE MIR 21 185 -23 2085 126 0 13 chr11 141949540 141949896 -8833657 - AluSg SINE Alu 0 310 1 841 133 13 26 chr11 141950683 141950834 -8832719 + AluSc SINE Alu 159 307 -2 1278 176 12 4 chr11 141951489 141951738 -8831815 - MER41C LTR ERV1 -2 552 302 5451 168 48 94 chr11 141951738 141953293 -8830260 - MER52A LTR ERV1 0 1755 273 924 204 14 86 chr11 141953800 141954079 -8829474 - MER41C LTR ERV1 -295 259 1 1254 181 54 4 chr11 141954646 141955007 -8828546 - AluJb SINE Alu 0 409 36 3567 173 53 84 chr11 141955336 141956257 -8827296 - MER21A LTR ERV1 -30 901 9 2251 95 0 0 chr11 141956271 141956567 -8826986 + AluSx SINE Alu 1 296 -16 282 106 0 0 chr11 141959935 141959982 -8823571 + (GA)n Simple_repeat Simple_repeat 2 48 0 4036 150 52 38 chr11 141961023 141961844 -8821709 + L1MA7 LINE L1 5459 6291 0 201 250 0 23 chr11 141962429 141962473 -8821080 - L2 LINE L2 -20 3293 3251 311 286 65 35 chr11 141962576 141962775 -8820778 - MIR SINE MIR -29 233 29 257 340 87 0 chr11 141964985 141965088 -8818465 + L2 LINE L2 3196 3307 -6 2439 62 0 3 chr11 141965501 141965809 -8817744 + AluY SINE Alu 1 307 -4 283 136 0 102 chr11 141966644 141966703 -8816850 - L3 LINE CR1 -1 1576 1524 2558 250 53 21 chr11 141966863 141967636 -8815917 + L1MC4 LINE L1 7084 7893 -149 297 0 0 0 chr11 141967636 141967669 -8815884 + (CA)n Simple_repeat Simple_repeat 2 34 0 2558 250 53 21 chr11 141967669 141967816 -8815737 + L1MC4 LINE L1 7893 8034 -8 22 0 0 0 chr11 141967892 141967914 -8815639 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr11 141967972 141968006 -8815547 + AT_rich Low_complexity Low_complexity 1 34 0 272 308 0 15 chr11 141968093 141968158 -8815395 + MIR SINE MIR 16 79 -129 23 0 0 0 chr11 141968632 141968655 -8814898 + AT_rich Low_complexity Low_complexity 1 23 0 307 206 0 28 chr11 141969083 141969190 -8814363 + CT-rich Low_complexity Low_complexity 2 105 0 28 29 0 0 chr11 141969514 141969549 -8814004 + AT_rich Low_complexity Low_complexity 1 35 0 327 256 68 0 chr11 141969753 141969870 -8813683 - L1MCa LINE L1 -4311 2115 1991 486 141 82 0 chr11 141969996 141970261 -8813292 + FRAM SINE Alu 64 335 0 1721 103 66 0 chr11 141970310 141970553 -8813000 + AluSx SINE Alu 1 259 -53 1048 155 50 85 chr11 141971963 141972221 -8811332 - L1PB4 LINE L1 -2 6154 5906 249 83 0 0 chr11 141972858 141972894 -8810659 + (TC)n Simple_repeat Simple_repeat 1 36 0 268 64 43 0 chr11 141973319 141973366 -8810187 + (GA)n Simple_repeat Simple_repeat 1 49 0 23 0 0 0 chr11 141973494 141973517 -8810036 + AT_rich Low_complexity Low_complexity 1 23 0 209 265 0 0 chr11 141974236 141974285 -8809268 - MIR SINE MIR -123 139 91 2259 96 0 0 chr11 141974824 141975116 -8808437 + AluSq SINE Alu 1 292 -21 27 0 0 0 chr11 141975261 141975288 -8808265 + AT_rich Low_complexity Low_complexity 1 27 0 3180 122 55 43 chr11 141975290 141975753 -8807800 - L1MA8 LINE L1 -2 6289 5816 2289 110 0 3 chr11 141975753 141976062 -8807491 + AluSc SINE Alu 1 308 -1 3180 122 55 43 chr11 141976062 141976221 -8807332 - L1MA8 LINE L1 -475 5816 5660 319 203 31 102 chr11 141977222 141977350 -8806203 - L2 LINE L2 -75 3238 3120 186 279 47 58 chr11 141977525 141977611 -8805942 - L2 LINE L2 -301 2971 2887 423 284 102 10 chr11 141978330 141978527 -8805026 + MIR SINE MIR 48 262 0 1661 193 7 10 chr11 141978728 141979023 -8804530 + AluJb SINE Alu 1 294 -18 4081 169 20 30 chr11 141979023 141979905 -8803648 - L1MB2 LINE L1 -9 6162 5289 223 239 0 0 chr11 141979931 141979977 -8803576 + (TG)n Simple_repeat Simple_repeat 2 47 0 492 258 50 25 chr11 141980256 141980376 -8803177 - L2 LINE L2 0 3272 3150 202 376 40 20 chr11 141981060 141981209 -8802344 + MIR3 SINE MIR 2 153 -55 1098 218 70 30 chr11 141981250 141981581 -8801972 + MER2 DNA MER2_type 1 344 0 420 305 110 35 chr11 141981767 141981967 -8801586 + MIR SINE MIR 48 262 0 21 36 0 0 chr11 141983987 141984015 -8799538 + AT_rich Low_complexity Low_complexity 1 28 0 872 172 43 43 chr11 141984015 141984248 -8799305 - L1MB1 LINE L1 -1 6167 5935 253 281 123 53 chr11 141984587 141984701 -8798852 + L2 LINE L2 3151 3272 0 268 326 70 12 chr11 141984734 141984820 -8798733 + L2 LINE L2 3153 3243 -29 196 239 22 0 chr11 141985898 141985944 -8797609 + MIR SINE MIR 152 198 -64 307 353 137 15 chr11 141986036 141986240 -8797313 + MIR SINE MIR 29 257 -5 32 0 0 0 chr11 141986711 141986743 -8796810 + AT_rich Low_complexity Low_complexity 1 32 0 268 279 51 0 chr11 141986953 141987032 -8796521 + MIR SINE MIR 52 134 -74 329 207 35 23 chr11 141987094 141987181 -8796372 + MER94 DNA DNA 18 105 -29 32 57 0 0 chr11 141987422 141987475 -8796078 + AT_rich Low_complexity Low_complexity 1 53 0 435 311 62 16 chr11 141988684 141988877 -8794676 + MIR SINE MIR 5 206 -56 436 326 110 0 chr11 141989273 141989491 -8794062 - MIR SINE MIR -6 256 15 719 260 96 60 chr11 141990728 141991143 -8792410 - MLT1J LTR MaLR -69 442 13 287 302 12 0 chr11 141991565 141991651 -8791902 + (TA)n Simple_repeat Simple_repeat 2 88 0 328 276 35 0 chr11 141991657 141991744 -8791809 + L1MC4 LINE L1 6614 6703 -1339 206 197 91 15 chr11 141991773 141991839 -8791714 - MIR SINE MIR -69 193 123 232 196 0 20 chr11 141992953 141993004 -8790549 + CT-rich Low_complexity Low_complexity 2 51 0 22 0 0 0 chr11 141994020 141994042 -8789511 + AT_rich Low_complexity Low_complexity 1 22 0 330 276 157 0 chr11 141994260 141994394 -8789159 - MIR SINE MIR -9 253 99 191 325 12 48 chr11 141994794 141994877 -8788676 + L2 LINE L2 3188 3267 -5 305 325 131 0 chr11 141996518 141996678 -8786875 + L1ME LINE L1 5314 5494 -2314 273 276 135 6 chr11 141996722 141996892 -8786661 + L1ME LINE L1 5558 5749 -372 612 168 40 0 chr11 141997237 141997362 -8786191 - L1MB3 LINE L1 -13 6170 6041 55 29 0 0 chr11 141998451 141998520 -8785033 + AT_rich Low_complexity Low_complexity 1 69 0 193 246 59 93 chr11 141998559 141998596 -8784957 - MIR SINE MIR -45 217 180 1570 101 41 0 chr11 141998596 141998815 -8784738 - MER30 DNA MER1_type 0 230 3 193 246 59 93 chr11 141998815 141998895 -8784658 - MIR SINE MIR -82 180 104 189 281 18 18 chr11 141998906 141998963 -8784590 - MIR SINE MIR -62 146 90 195 322 46 0 chr11 141998978 141999065 -8784488 - MIR SINE MIR -4 258 168 1208 269 76 45 chr11 142001812 142002505 -8781048 - L1ME3A LINE L1 -8 6162 5492 2240 84 0 3 chr11 142002505 142002804 -8780749 - AluY SINE Alu -13 298 1 1208 269 76 45 chr11 142002804 142003626 -8779927 - L1ME3A LINE L1 -678 5492 4479 493 268 126 28 chr11 142003646 142003699 -8779854 - L1MC4 LINE L1 -1 8041 7995 2154 111 3 7 chr11 142003699 142003996 -8779557 + AluSg SINE Alu 1 296 -14 493 268 126 28 chr11 142003996 142004259 -8779294 - L1MC4 LINE L1 -47 7995 7694 6733 54 10 1 chr11 142004262 142005483 -8778070 - L1PA7 LINE L1 -21 6133 4904 663 59 20 0 chr11 142005586 142005687 -8777866 - MSTA LTR MaLR -325 103 1 231 183 17 17 chr11 142005688 142005748 -8777805 - L1MCa LINE L1 -6326 100 41 24 0 0 0 chr11 142007157 142007181 -8776372 + AT_rich Low_complexity Low_complexity 1 24 0 219 196 71 0 chr11 142007191 142007247 -8776306 - MIR3 SINE MIR -24 184 125 183 293 103 0 chr11 142007363 142007421 -8776132 - L2 LINE L2 -4 3268 3205 258 176 59 20 chr11 142007746 142007848 -8775705 + (TTATA)n Simple_repeat Simple_repeat 5 110 0 24 53 0 0 chr11 142008758 142008796 -8774757 + AT_rich Low_complexity Low_complexity 1 38 0 28 0 0 0 chr11 142008942 142008970 -8774583 + AT_rich Low_complexity Low_complexity 1 28 0 1947 227 42 4 chr11 142009215 142009756 -8773797 + L1MB7 LINE L1 5614 6175 -9 22 0 0 0 chr11 142009812 142009834 -8773719 + AT_rich Low_complexity Low_complexity 1 22 0 258 373 22 22 chr11 142009884 142010069 -8773484 - MIR SINE MIR -59 203 19 234 91 0 0 chr11 142010796 142010829 -8772724 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 261 170 0 0 chr11 142010842 142010895 -8772658 + (TA)n Simple_repeat Simple_repeat 1 53 0 273 122 20 0 chr11 142012456 142012505 -8771048 - L2 LINE L2 0 3313 3264 291 342 173 15 chr11 142012517 142012859 -8770694 + L3 LINE CR1 1058 1453 -124 25 0 0 0 chr11 142013725 142013750 -8769803 + AT_rich Low_complexity Low_complexity 1 25 0 42 68 0 26 chr11 142013790 142013907 -8769646 + AT_rich Low_complexity Low_complexity 1 114 0 434 285 46 37 chr11 142014361 142014763 -8768790 - L1ME LINE L1 -565 5597 5193 22 0 0 0 chr11 142014885 142014907 -8768646 + AT_rich Low_complexity Low_complexity 1 22 0 274 314 7 44 chr11 142014911 142015048 -8768505 - L1ME LINE L1 -1134 5012 4881 1038 216 170 79 chr11 142015065 142015552 -8768001 + MLT1F1 LTR MaLR 21 561 -6 480 261 124 31 chr11 142015552 142015874 -8767679 - L1ME LINE L1 -2674 3472 3121 801 170 78 156 chr11 142016201 142016624 -8766929 - MLT1B LTR MaLR 0 390 1 513 182 0 0 chr11 142017241 142017340 -8766213 + CT-rich Low_complexity Low_complexity 1 99 0 554 116 12 0 chr11 142017349 142017435 -8766118 - MSTA LTR MaLR 0 428 342 219 323 188 0 chr11 142018165 142018261 -8765292 - L2 LINE L2 -5 3308 3195 195 320 129 54 chr11 142018485 142018632 -8764921 + MIR SINE MIR 60 217 -45 27 0 0 0 chr11 142020478 142020505 -8763048 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr11 142021162 142021190 -8762363 + AT_rich Low_complexity Low_complexity 1 28 0 346 270 52 0 chr11 142021655 142021770 -8761783 - MIR SINE MIR -14 248 128 258 105 0 0 chr11 142023729 142023767 -8759786 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 198 382 108 10 chr11 142023849 142023951 -8759602 - L2 LINE L2 -8 3264 3153 578 216 138 82 chr11 142023995 142024202 -8759351 - MIR SINE MIR -1 261 38 3596 118 36 2 chr11 142024202 142024761 -8758792 + LTR19B LTR ERV1 3 580 0 578 216 138 82 chr11 142024761 142024784 -8758769 - MIR SINE MIR -224 38 18 192 366 0 0 chr11 142026407 142026489 -8757064 + MIR SINE MIR 120 201 -61 246 62 0 0 chr11 142026534 142026566 -8756987 + (CA)n Simple_repeat Simple_repeat 2 33 0 38 0 0 0 chr11 142026623 142026661 -8756892 + AT_rich Low_complexity Low_complexity 1 38 0 2496 77 21 45 chr11 142026781 142027158 -8756395 + L1PB1 LINE L1 5783 6150 -1 245 407 26 21 chr11 142027963 142028152 -8755401 + L2 LINE L2 2895 3084 -188 223 391 59 39 chr11 142029448 142029704 -8753849 + L2 LINE L2 2708 2968 -346 30 59 0 0 chr11 142029953 142030004 -8753549 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr11 142030521 142030542 -8753011 + AT_rich Low_complexity Low_complexity 1 21 0 592 290 70 4 chr11 142030975 142031234 -8752319 - L1M4 LINE L1 -1074 5072 4797 1121 175 133 28 chr11 142031342 142031702 -8751851 - L1MA9 LINE L1 -37 6275 5878 2623 150 16 14 chr11 142031705 142032286 -8751267 - L1MA9 LINE L1 0 6312 5669 343 186 0 0 chr11 142032287 142032346 -8751207 - Tigger7 DNA MER2_type -1 2586 2528 1523 222 139 68 chr11 142032347 142033201 -8750352 + LTR1B LTR ERV1 2 1011 -9 836 136 69 18 chr11 142033212 142033410 -8750143 - Tigger7 DNA MER2_type -56 2435 2224 515 147 0 35 chr11 142033385 142033501 -8750052 - LTR1 LTR ERV1 -673 112 1 * 25 0 0 0 chr11 142033625 142033650 -8749903 + AT_rich Low_complexity Low_complexity 1 25 0 776 147 47 12 chr11 142034170 142034340 -8749213 - L1MA10 LINE L1 -11 6323 6148 3831 101 61 32 chr11 142034366 142034478 -8749075 + LTR1 LTR ERV1 73 180 -605 2013 109 7 7 chr11 142034478 142034772 -8748781 + AluSc SINE Alu 1 294 -15 3831 101 61 32 chr11 142034772 142035351 -8748202 + LTR1 LTR ERV1 180 784 -1 763 186 5 63 chr11 142035762 142035983 -8747570 - L1MC3 LINE L1 -7 7778 7571 * 770 246 77 9 chr11 142035981 142036421 -8747132 - L1M4 LINE L1 -2881 4684 4211 2217 165 37 18 chr11 142036421 142036875 -8746678 + L1MA10 LINE L1 5870 6332 -2 770 246 77 9 chr11 142036875 142036889 -8746664 - L1M4 LINE L1 -3354 4211 4199 4473 196 30 6 chr11 142037720 142038672 -8744881 - L1M4 LINE L1 -6589 976 2 355 315 37 19 chr11 142039487 142039649 -8743904 + MIR SINE MIR 85 249 -13 2076 113 18 0 chr11 142039660 142039944 -8743609 - AluSc SINE Alu -20 289 1 208 296 0 0 chr11 142040309 142040363 -8743190 + L2 LINE L2 3219 3272 0 237 324 96 15 chr11 142040708 142040844 -8742709 + MIR SINE MIR 72 218 -44 3843 163 53 118 chr11 142042745 142044083 -8739470 - MER52A LTR ERV1 -64 1214 58 229 273 55 0 chr11 142046109 142046164 -8737389 - L2 LINE L2 -5 3267 3210 296 325 0 0 chr11 142046878 142046961 -8736592 - MIR SINE MIR -86 122 40 556 360 138 18 chr11 142046989 142047611 -8735942 - L3 LINE CR1 -5 1572 876 333 0 37 37 chr11 142048126 142048180 -8735373 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 671 109 99 0 chr11 142048181 142048282 -8735271 - FLAM_C SINE Alu -32 111 1 2048 152 0 0 chr11 142049872 142050174 -8733379 - AluSx SINE Alu -10 302 1 484 192 119 51 chr11 142051544 142051721 -8731832 + MER52A LTR ERV1 1442 1630 -125 19202 90 15 2 chr11 142051870 142054755 -8728798 - L1P LINE L1 -850 5296 2373 388 319 47 10 chr11 142054793 142055060 -8728493 - L1MC4 LINE L1 -1104 6704 6443 701 167 22 14 chr11 142055068 142055206 -8728347 - Tigger7 DNA MER2_type -1 2490 2352 1183 234 27 4 chr11 142055212 142055473 -8728080 - Tigger7 DNA MER2_type -2220 267 1 1936 256 104 51 chr11 142055493 142057046 -8726507 - L1M4 LINE L1 -1674 4472 2838 478 341 51 9 chr11 142057615 142057832 -8725721 + MIR SINE MIR 37 262 0 21 0 0 0 chr11 142057833 142057854 -8725699 + AT_rich Low_complexity Low_complexity 1 21 0 322 112 371 22 chr11 142057923 142058012 -8725541 - FLAM_C SINE Alu -13 120 1 441 343 50 4 chr11 142058572 142058803 -8724750 + MIR SINE MIR 18 260 -2 240 35 0 0 chr11 142059517 142059546 -8724007 + (T)n Simple_repeat Simple_repeat 1 29 0 25 0 0 0 chr11 142059567 142059592 -8723961 + GC_rich Low_complexity Low_complexity 1 25 0 2833 10 0 0 chr11 142059739 142060049 -8723504 - AluYa5 SINE Alu -1 310 1 762 84 0 0 chr11 142060911 142061018 -8722535 + (TTCC)n Simple_repeat Simple_repeat 4 110 0 8421 158 40 10 chr11 142061784 142062078 -8721475 - L1MA8 LINE L1 -12 6166 5882 1486 143 0 9 chr11 142062078 142062295 -8721258 - AluJb SINE Alu -12 300 86 8421 158 40 10 chr11 142062295 142063441 -8720112 - L1MA8 LINE L1 -296 5882 4772 300 27 0 0 chr11 142063441 142063478 -8720075 + (TG)n Simple_repeat Simple_repeat 2 38 0 8421 158 40 10 chr11 142063478 142064508 -8719045 - L1MA8 LINE L1 -1406 4772 3644 1389 195 4 23 chr11 142064690 142064946 -8718607 - AluJo SINE Alu -19 293 43 651 244 0 0 chr11 142064983 142065106 -8718447 - FLAM_C SINE Alu -9 124 2 411 351 129 36 chr11 142065141 142065747 -8717806 - L2 LINE L2 -2495 819 158 734 319 13 9 chr11 142067083 142067312 -8716241 - MIR SINE MIR -5 257 28 1213 144 42 81 chr11 142067620 142067954 -8715599 + MER33 DNA MER1_type 4 324 0 773 322 191 32 chr11 142067954 142068910 -8714643 + L3 LINE CR1 256 1363 -214 257 339 24 55 chr11 142068939 142069066 -8714487 + MIR SINE MIR 21 143 -65 394 307 10 0 chr11 142071474 142071575 -8711978 + MIR3 SINE MIR 58 159 -49 220 238 180 49 chr11 142071768 142071890 -8711663 + MER5A DNA MER1_type 46 183 -6 1999 274 47 48 chr11 142072787 142073794 -8709759 - L1MEc LINE L1 -3644 2920 1913 267 31 0 0 chr11 142073794 142073826 -8709727 + (TG)n Simple_repeat Simple_repeat 2 33 0 2255 110 0 0 chr11 142073829 142074119 -8709434 - AluY SINE Alu -21 290 1 1999 274 47 48 chr11 142074119 142074593 -8708960 - L1MEc LINE L1 -4653 1911 1457 203 162 0 0 chr11 142074610 142074647 -8708906 + T-rich Low_complexity Low_complexity 2 38 0 378 279 58 11 chr11 142074686 142074811 -8708742 - L1MEc LINE L1 -5846 199 61 2021 137 129 5 chr11 142074811 142075192 -8708361 - MSTA LTR MaLR 0 428 1 378 279 58 11 chr11 142075192 142075256 -8708297 - L1MEc LINE L1 -5984 61 1 30 27 0 0 chr11 142075646 142075683 -8707870 + AT_rich Low_complexity Low_complexity 1 37 0 590 198 121 44 chr11 142075932 142076205 -8707348 - L1M1 LINE L1 -3956 3609 3316 200 260 0 20 chr11 142077232 142077282 -8706271 + GA-rich Low_complexity Low_complexity 4 52 0 1967 134 3 0 chr11 142077774 142078057 -8705496 - AluSx SINE Alu -28 284 1 267 306 159 6 chr11 142078245 142078402 -8705151 + MIR SINE MIR 36 216 -46 306 360 90 9 chr11 142078501 142078712 -8704841 + MIR SINE MIR 35 262 0 564 344 82 15 chr11 142079010 142079353 -8704200 - L3 LINE CR1 -1 1576 1211 317 282 224 13 chr11 142079377 142079533 -8704020 + MIR SINE MIR 2 190 -72 392 297 38 40 chr11 142081070 142081287 -8702266 + MIR SINE MIR 31 250 -12 396 40 0 0 chr11 142081287 142081337 -8702216 + (TG)n Simple_repeat Simple_repeat 2 51 0 392 297 38 40 chr11 142081337 142081350 -8702203 + MIR SINE MIR 250 262 0 22 0 0 0 chr11 142081674 142081696 -8701857 + AT_rich Low_complexity Low_complexity 1 22 0 1326 151 4 0 chr11 142081764 142081989 -8701564 + L1PB1 LINE L1 5926 6151 0 299 300 42 51 chr11 142082095 142082234 -8701319 - MIR SINE MIR -65 143 16 425 286 65 42 chr11 142083626 142083794 -8699759 - MIR SINE MIR -71 191 20 216 111 0 0 chr11 142083814 142083850 -8699703 + (GA)n Simple_repeat Simple_repeat 1 36 0 1063 171 137 81 chr11 142084041 142084398 -8699155 + L1MB5 LINE L1 5798 6174 0 2171 123 3 0 chr11 142084752 142085052 -8698501 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr11 142087296 142087318 -8696235 + AT_rich Low_complexity Low_complexity 1 22 0 33 43 0 0 chr11 142087388 142087435 -8696118 + AT_rich Low_complexity Low_complexity 1 47 0 1880 145 9 3 chr11 142087781 142088112 -8695441 - L1MA5 LINE L1 0 6300 5968 24 77 0 0 chr11 142088587 142088639 -8694914 + AT_rich Low_complexity Low_complexity 1 52 0 2466 60 0 0 chr11 142088740 142089040 -8694513 - AluY SINE Alu -11 300 1 235 327 50 10 chr11 142089055 142089156 -8694397 + L2 LINE L2 2946 3050 -222 25 51 0 0 chr11 142089700 142089739 -8693814 + AT_rich Low_complexity Low_complexity 1 39 0 2602 117 29 0 chr11 142089755 142090241 -8693312 - L1P4 LINE L1 -479 5682 5185 288 0 0 0 chr11 142090250 142090282 -8693271 + (TA)n Simple_repeat Simple_repeat 1 32 0 217 281 0 0 chr11 142090289 142090305 -8693248 + (CATATA)n Simple_repeat Simple_repeat 6 21 -41 189 0 0 0 chr11 142090305 142090326 -8693227 + (GA)n Simple_repeat Simple_repeat 2 22 0 217 281 0 0 chr11 142090326 142090366 -8693187 + (CATATA)n Simple_repeat Simple_repeat 20 62 0 346 226 0 49 chr11 142090367 142090469 -8693084 - L1MC4 LINE L1 -1339 6703 6607 204 40 0 0 chr11 142090481 142090506 -8693047 + (TA)n Simple_repeat Simple_repeat 1 25 0 6212 175 8 2 chr11 142090506 142091706 -8691847 - L1P4 LINE L1 -970 5176 3970 2713 126 3 69 chr11 142091696 142092109 -8691444 + L1PA13 LINE L1 5665 6027 -136 * 3071 105 26 32 chr11 142092109 142092604 -8690949 - LTR22B LTR ERVK 0 492 1 2713 126 3 69 chr11 142092604 142092733 -8690820 + L1PA13 LINE L1 6027 6163 0 501 329 50 23 chr11 142092798 142093017 -8690536 + MIR SINE MIR 11 235 -27 1242 223 65 41 chr11 142093036 142093502 -8690051 - MLT2B1 LTR ERVL -6 548 1 258 341 11 0 chr11 142094076 142094167 -8689386 - MIR SINE MIR -5 257 166 1377 107 49 4 chr11 142094167 142094392 -8689161 - LTR12 LTR ERV1 0 714 480 278 224 41 31 chr11 142094393 142094491 -8689062 - LTR30 LTR ERV1 -80 642 544 1200 121 121 62 chr11 142094491 142094781 -8688772 - pTR5 LTR ERV1 -413 2025 1719 306 360 90 9 chr11 142094800 142095011 -8688542 - MIR SINE MIR 0 262 35 275 296 23 34 chr11 142145372 142145460 -8638093 + L3 LINE CR1 1445 1531 -46 348 275 0 75 chr11 142145969 142146089 -8637464 - L2 LINE L2 -1 3271 3161 259 242 76 0 chr11 142146775 142146841 -8636712 - LTR50 LTR ERVL -677 118 48 329 290 56 19 chr11 142146984 142147146 -8636407 + L1MC4a LINE L1 5715 5882 -1926 231 220 0 0 chr11 142147306 142147356 -8636197 + L1MC4a LINE L1 5879 5928 -1880 3291 144 23 11 chr11 142147388 142147951 -8635602 + Tigger3b DNA MER2_type 1 570 -661 * 3403 113 0 8 chr11 142147929 142148458 -8635095 + Tigger3b DNA MER2_type 708 1232 0 237 279 35 0 chr11 142148541 142148627 -8634926 + L1MC4a LINE L1 6075 6163 -1645 354 107 0 0 chr11 142148693 142148749 -8634804 + (TA)n Simple_repeat Simple_repeat 2 57 0 638 260 69 30 chr11 142149212 142149616 -8633937 - HAL1 LINE L1 -145 2362 1943 490 305 121 23 chr11 142149649 142149997 -8633556 - MLT1J2 LTR MaLR -59 391 10 237 200 0 0 chr11 142150020 142150070 -8633483 - HAL1 LINE L1 -853 1654 1605 1338 259 44 41 chr11 142150076 142150643 -8632910 - HAL1 LINE L1 -1938 569 1 259 309 88 22 chr11 142151011 142151147 -8632406 - MIR SINE MIR -114 148 4 1829 192 118 23 chr11 142151325 142151757 -8631796 - MER66A LTR ERV1 0 478 6 1167 264 69 18 chr11 142151951 142152576 -8630977 + L1M4 LINE L1 3940 4596 -1550 286 329 30 0 chr11 142152639 142152803 -8630750 + HAL1 LINE L1 1566 1734 -773 * 405 205 77 0 chr11 142152784 142152901 -8630652 + L1MC3 LINE L1 7460 7585 -200 825 163 84 0 chr11 142152903 142153081 -8630472 + L1MC2 LINE L1 6134 6326 -18 624 286 30 62 chr11 142153095 142153592 -8629961 + HAL1 LINE L1 1721 2201 -306 339 25 0 0 chr11 142153594 142153634 -8629919 + (TG)n Simple_repeat Simple_repeat 1 40 0 639 249 100 54 chr11 142154047 142154288 -8629265 - MIR SINE MIR -6 256 5 10678 42 48 5 chr11 142156273 142157595 -8625958 + SVA Other Other 5 1382 -4 984 217 183 35 chr11 142158995 142159178 -8624375 + MSTD LTR MaLR 1 156 -240 264 30 0 0 chr11 142159178 142159211 -8624342 + (TC)n Simple_repeat Simple_repeat 2 34 0 984 217 183 35 chr11 142159211 142159372 -8624181 + MSTD LTR MaLR 156 396 0 26 74 0 0 chr11 142159508 142159562 -8623991 + AT_rich Low_complexity Low_complexity 1 54 0 1533 152 6 115 chr11 142159563 142159912 -8623641 + AluJo SINE Alu 2 312 0 1604 147 39 0 chr11 142159913 142160225 -8623328 + L1MA7 LINE L1 5966 6289 -2 1697 164 79 0 chr11 142160267 142160547 -8623006 + AluJb SINE Alu 1 302 -10 847 206 62 48 chr11 142160547 142160819 -8622734 + L1MD2 LINE L1 6069 6344 -15 318 320 19 10 chr11 142161983 142162086 -8621467 - L1ME3A LINE L1 -12 6158 6055 2121 127 7 0 chr11 142162433 142162732 -8620821 + AluSq SINE Alu 1 301 -12 216 0 0 0 chr11 142165128 142165152 -8618401 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 714 170 0 0 chr11 142165156 142165268 -8618285 - AluJo SINE Alu -22 290 179 658 227 166 0 chr11 142165345 142165508 -8618045 - AluJo SINE Alu -122 190 1 661 333 34 29 chr11 142165692 142166110 -8617443 + LTR16B LTR ERVL 43 462 -2 315 0 0 0 chr11 142166132 142166167 -8617386 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 19387 28 4 1 chr11 142166167 142169260 -8614293 - L1PA3 LINE L1 -5 6150 3039 989 277 67 18 chr11 142169260 142169859 -8613694 + L1M4 LINE L1 4722 5349 -797 1178 112 61 10 chr11 142169873 142170069 -8613484 - MER30 DNA MER1_type -24 206 1 2298 100 3 0 chr11 142171304 142171603 -8611950 + AluSc SINE Alu 1 300 -9 11683 26 0 0 chr11 142172021 142174168 -8609385 + L1PA3 LINE L1 4006 6152 -3 32 0 0 0 chr11 142174194 142174226 -8609327 + AT_rich Low_complexity Low_complexity 1 32 0 507 304 50 8 chr11 142174234 142174494 -8609059 + HAL1 LINE L1 105 375 -2132 1917 168 0 9 chr11 142174494 142174809 -8608744 + AluJb SINE Alu 1 312 0 387 41 0 0 chr11 142174891 142174940 -8608613 + (CA)n Simple_repeat Simple_repeat 2 50 0 494 250 34 0 chr11 142174950 142175126 -8608427 + L1MD3 LINE L1 7802 7983 -12 318 320 19 10 chr11 142176298 142176401 -8607152 - L1ME3A LINE L1 -12 6158 6055 549 184 0 0 chr11 142179030 142179117 -8604436 - AluJo SINE Alu -47 265 179 660 227 166 0 chr11 142179194 142179357 -8604196 - AluJo SINE Alu -122 190 1 29 28 0 0 chr11 142179384 142179420 -8604133 + AT_rich Low_complexity Low_complexity 1 36 0 706 313 43 34 chr11 142179534 142179949 -8603604 + LTR16B LTR ERVL 34 452 -12 323 302 0 0 chr11 142179961 142180067 -8603486 + L1M4 LINE L1 4712 4817 -1329 1977 138 0 0 chr11 142180067 142180357 -8603196 + AluSx SINE Alu 14 303 -9 408 259 9 103 chr11 142180438 142180670 -8602883 + HAL1 LINE L1 2053 2262 -245 182 361 113 31 chr11 142180671 142180998 -8602555 - L2 LINE L2 -672 2642 2289 644 236 55 59 chr11 142181028 142181248 -8602305 + MER20 DNA MER1_type 1 219 0 552 242 40 124 chr11 142181286 142181559 -8601994 - MIR SINE MIR -8 254 5 246 239 14 28 chr11 142183597 142183668 -8599885 + CT-rich Low_complexity Low_complexity 3 72 0 630 242 57 16 chr11 142184179 142184373 -8599180 + MER51D LTR ERV1 456 657 0 251 196 31 78 chr11 142185181 142185261 -8598292 - MIR SINE MIR -84 124 49 2486 198 26 62 chr11 142185731 142186389 -8597164 + LTR27 LTR ERV1 3 636 0 2249 99 3 0 chr11 142187126 142187419 -8596134 + AluSp SINE Alu 1 294 -19 22 35 0 0 chr11 142187650 142187679 -8595874 + AT_rich Low_complexity Low_complexity 1 29 0 2373 196 25 29 chr11 142189492 142190266 -8593287 - L1ME3A LINE L1 -240 5938 5174 478 291 107 47 chr11 142190723 142191022 -8592531 + MLT1L LTR MaLR 217 533 -82 2077 13 0 0 chr11 142191035 142191339 -8592214 + L1PA2 LINE L1 5710 6151 -4 608 145 17 8 chr11 142191536 142191653 -8591900 - L1PA8 LINE L1 -1 6171 6054 261 331 69 31 chr11 142191837 142191967 -8591586 + MIR3 SINE MIR 5 139 -69 7602 30 0 0 chr11 142192121 142193248 -8590305 - L1PA4 LINE L1 0 6155 5029 210 150 0 0 chr11 142195568 142195608 -8587945 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1733 178 0 25 chr11 142196033 142196353 -8587200 - AluJo SINE Alu 0 312 1 1297 217 82 12 chr11 142196385 142196726 -8586827 - MLT1A1 LTR MaLR 0 365 1 523 261 117 30 chr11 142196904 142197134 -8586419 + MIR SINE MIR 10 259 -3 420 20 0 0 chr11 142197192 142197241 -8586312 + (TG)n Simple_repeat Simple_repeat 2 50 0 1359 142 19 86 chr11 142197248 142197515 -8586038 - AluJb SINE Alu -41 271 23 284 370 0 59 chr11 142197542 142197677 -8585876 + L2 LINE L2 3137 3263 -9 214 146 18 36 chr11 142198430 142198485 -8585068 + (CATA)n Simple_repeat Simple_repeat 3 56 0 5899 146 67 10 chr11 142198542 142199694 -8583859 - Tigger3b DNA MER2_type 0 1231 15 12211 135 21 10 chr11 142199714 142200709 -8582844 + Tigger1 DNA MER2_type 1 983 -1435 2077 161 0 0 chr11 142200709 142201019 -8582534 + AluSx SINE Alu 1 310 -2 12211 135 21 10 chr11 142201019 142202091 -8581462 + Tigger1 DNA MER2_type 983 2092 -326 11741 194 48 6 chr11 142202099 142203476 -8580077 + L1MA5 LINE L1 2224 3541 -2759 204 40 0 0 chr11 142203476 142203501 -8580052 + (CA)n Simple_repeat Simple_repeat 2 26 0 11741 194 48 6 chr11 142203501 142206035 -8577518 + L1MA5 LINE L1 3541 6299 -1 6969 53 5 0 chr11 142206077 142206949 -8576604 + L1PA7 LINE L1 5273 6148 -6 554 138 0 0 chr11 142206949 142207058 -8576495 - Charlie5 DNA MER1_type -108 2504 2396 451 214 244 0 chr11 142207475 142207643 -8575910 - HAL1b LINE L1 -585 763 555 477 268 13 0 chr11 142207740 142207893 -8575660 - L1MA10 LINE L1 0 6334 6180 548 240 64 37 chr11 142207907 142208423 -8575130 + L1ME LINE L1 3884 4525 -1621 * 595 184 62 27 chr11 142208408 142208578 -8574975 - L1MB8 LINE L1 -340 5822 5663 1086 234 38 47 chr11 142208678 142209101 -8574452 + L1ME LINE L1 4528 4946 -1200 982 176 105 31 chr11 142209123 142209487 -8574066 + MSTC LTR MaLR 2 428 0 936 269 34 21 chr11 142209487 142210200 -8573353 + L1ME LINE L1 4961 5588 -578 187 376 40 27 chr11 142211822 142211971 -8571582 + MIR3 SINE MIR 18 168 -40 210 118 0 0 chr11 142213122 142213156 -8570397 + (A)n Simple_repeat Simple_repeat 1 34 0 826 299 73 18 chr11 142214714 142215055 -8568498 + L1M3d LINE L1 9 368 -5523 216 273 0 0 chr11 142215206 142215294 -8568259 + (TA)n Simple_repeat Simple_repeat 2 89 0 254 281 0 0 chr11 142215299 142215388 -8568165 - L1MC4 LINE L1 -1340 6702 6614 435 199 0 58 chr11 142215411 142215602 -8567951 + (TA)n Simple_repeat Simple_repeat 1 180 0 1431 146 7 40 chr11 142215647 142215921 -8567632 + L1MB7 LINE L1 5901 6165 -19 929 174 87 5 chr11 142216115 142216310 -8567243 + MER20 DNA MER1_type 2 212 -7 * 1270 196 38 17 chr11 142216307 142216784 -8566769 + MLT1E LTR MaLR 11 591 -2 199 246 49 0 chr11 142216805 142216866 -8566687 + L3 LINE CR1 1512 1575 -2 492 253 166 40 chr11 142217045 142217472 -8566081 + HAL1 LINE L1 997 1477 -1030 611 164 88 18 chr11 142217480 142217651 -8565902 - MER53 DNA DNA -6 183 1 455 198 139 122 chr11 142217769 142218057 -8565496 + HAL1 LINE L1 1611 1903 -604 1906 133 4 0 chr11 142218379 142218658 -8564895 + AluSx SINE Alu 1 280 -32 496 28 56 0 chr11 142218658 142218730 -8564823 + (TAAAA)n Simple_repeat Simple_repeat 2 77 0 235 238 0 0 chr11 142218772 142218835 -8564718 + HAL1 LINE L1 2276 2338 -169 317 308 151 13 chr11 142218853 142219012 -8564541 + MIR SINE MIR 81 261 -1 345 238 60 107 chr11 142219243 142219411 -8564142 - MIR SINE MIR -66 196 37 848 238 22 5 chr11 142219425 142219610 -8563943 + MER5A DNA MER1_type 1 188 -1 246 130 22 0 chr11 142219704 142219750 -8563803 - MER50 LTR ERV1 -189 545 499 198 0 0 0 chr11 142219811 142219833 -8563720 + (TTA)n Simple_repeat Simple_repeat 2 23 0 700 207 0 0 chr11 142219842 142219977 -8563576 + AluJb SINE Alu 174 308 -4 487 276 32 13 chr11 142220153 142220309 -8563244 - MIR SINE MIR -71 191 33 625 268 68 39 chr11 142220388 142220506 -8563047 + L1ME3A LINE L1 5 118 -6424 189 0 0 0 chr11 142220506 142220527 -8563026 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 625 268 68 39 chr11 142220527 142220718 -8562835 + L1ME3A LINE L1 118 323 -6219 1807 176 71 46 chr11 142220733 142221215 -8562338 - L1MA9 LINE L1 -34 6278 5781 382 79 32 0 chr11 142221215 142221278 -8562275 + (TG)n Simple_repeat Simple_repeat 2 66 0 1807 176 71 46 chr11 142221278 142221313 -8562240 - L1MA9 LINE L1 -531 5781 5748 864 247 24 87 chr11 142221338 142221718 -8561835 + L1ME3A LINE L1 350 705 -5837 2047 179 35 20 chr11 142221718 142221841 -8561712 + L1MB7 LINE L1 5704 5824 -360 2337 103 0 0 chr11 142221841 142222142 -8561411 + AluSg SINE Alu 1 301 -9 2047 179 35 20 chr11 142222142 142222476 -8561077 + L1MB7 LINE L1 5824 6168 -16 24 0 0 0 chr11 142222476 142222500 -8561053 + AT_rich Low_complexity Low_complexity 1 24 0 2421 71 0 0 chr11 142222981 142223278 -8560275 - AluY SINE Alu -14 297 1 1014 260 40 31 chr11 142223278 142223807 -8559746 - L1MEc LINE L1 -5061 1173 659 462 294 116 36 chr11 142223811 142224172 -8559381 - L1MEc LINE L1 -5972 424 35 542 267 76 42 chr11 142224202 142224864 -8558689 - L1MC/D LINE L1 -747 5399 4747 270 0 0 0 chr11 142224999 142225029 -8558524 + (A)n Simple_repeat Simple_repeat 1 30 0 2559 171 67 2 chr11 142225158 142225941 -8557612 - L1MB7 LINE L1 -333 5851 5022 197 328 57 41 chr11 142227152 142227274 -8556279 - MIR SINE MIR -56 206 83 1555 181 60 36 chr11 142228269 142228590 -8554963 + MLT1F1 LTR MaLR 183 516 -51 2330 92 0 3 chr11 142228590 142228882 -8554671 - AluSg1 SINE Alu -18 291 1 1555 181 60 36 chr11 142228882 142228924 -8554629 + MLT1F1 LTR MaLR 516 555 -12 249 184 79 13 chr11 142228927 142229003 -8554550 + L1P5 LINE L1 5379 5459 -697 2235 81 3 3 chr11 142229210 142229527 -8554026 - AluY SINE Alu 0 317 1 343 351 11 46 chr11 142230436 142230610 -8552943 + L1ME3A LINE L1 1053 1220 -5326 2374 81 0 3 chr11 142230634 142230932 -8552621 + AluSg SINE Alu 1 297 -13 541 201 64 3 chr11 142230967 142231123 -8552430 + L1ME2 LINE L1 6021 6164 0 2250 106 0 7 chr11 142231128 142231431 -8552122 + AluSq SINE Alu 1 301 -12 227 271 65 75 chr11 142231464 142231663 -8551890 + L1MC4 LINE L1 7832 8028 -14 3219 256 40 51 chr11 142231679 142231768 -8551785 + L1ME3A LINE L1 3838 3926 -2718 1898 214 164 0 chr11 142231768 142232255 -8551298 + MLT1F1 LTR MaLR 1 567 0 3219 256 40 51 chr11 142232255 142232296 -8551257 + L1ME3A LINE L1 3926 3966 -2678 2226 118 0 9 chr11 142232296 142232611 -8550942 + AluSx SINE Alu 1 312 0 3219 256 40 51 chr11 142232611 142233347 -8550206 + L1ME3A LINE L1 3966 4709 -1935 414 0 0 0 chr11 142233347 142233393 -8550160 + (GAAA)n Simple_repeat Simple_repeat 4 49 0 3219 256 40 51 chr11 142233393 142233685 -8549868 + L1ME3A LINE L1 4709 4981 -1663 2312 96 3 3 chr11 142233685 142233986 -8549567 - AluSq SINE Alu -12 301 1 3219 256 40 51 chr11 142233986 142234280 -8549273 + L1ME3A LINE L1 4981 5277 -1367 225 0 0 0 chr11 142234281 142234306 -8549247 + (A)n Simple_repeat Simple_repeat 1 25 0 189 0 0 0 chr11 142234439 142234460 -8549093 + (A)n Simple_repeat Simple_repeat 1 21 0 1769 234 68 75 chr11 142234481 142235772 -8547781 + L1ME3A LINE L1 5345 6634 -34 749 149 0 0 chr11 142235793 142235914 -8547639 - L1PB3 LINE L1 -1 6153 6033 1354 241 170 39 chr11 142236170 142236705 -8546848 - MER115 DNA AcHobo -1 692 88 281 205 241 8 chr11 142236868 142236990 -8546563 - MIR SINE MIR -66 142 43 207 0 0 0 chr11 142238116 142238139 -8545414 + (A)n Simple_repeat Simple_repeat 1 23 0 996 270 162 42 chr11 142239392 142240195 -8543358 - HAL1 LINE L1 -1606 901 3 306 0 0 0 chr11 142240334 142240368 -8543185 + (A)n Simple_repeat Simple_repeat 1 34 0 2419 88 0 3 chr11 142240534 142240841 -8542712 - AluSg SINE Alu -4 306 1 2345 101 0 0 chr11 142240949 142241247 -8542306 - AluSc SINE Alu -11 298 1 801 294 0 19 chr11 142241361 142241575 -8541978 + MIR SINE MIR 12 221 -41 2074 113 0 7 chr11 142241596 142241906 -8541647 + AluSx SINE Alu 1 308 0 1459 175 152 76 chr11 142242001 142242435 -8541118 - MLT1C LTR MaLR 0 467 1 362 193 28 21 chr11 142242741 142242886 -8540667 + CT-rich Low_complexity Low_complexity 2 147 0 398 221 52 94 chr11 142243857 142244112 -8539441 - L2 LINE L2 -50 3263 3008 1594 183 33 4 chr11 142244529 142244803 -8538750 - AluJo SINE Alu -30 282 1 283 314 98 21 chr11 142246982 142247176 -8536377 + L2 LINE L2 2851 3059 -213 343 282 64 14 chr11 142247447 142247667 -8535886 + L1ME4a LINE L1 5731 5961 -160 230 195 0 0 chr11 142248193 142248234 -8535319 - L2 LINE L2 -5 3267 3227 211 240 180 10 chr11 142248261 142248361 -8535192 + L2 LINE L2 3182 3298 -15 404 269 225 6 chr11 142249221 142249381 -8534172 + MIR SINE MIR 68 262 0 278 261 208 23 chr11 142249407 142249537 -8534016 - MIR SINE MIR -74 188 35 190 217 83 67 chr11 142249905 142249965 -8533588 - L2 LINE L2 -7 3265 3205 243 0 0 0 chr11 142250230 142250257 -8533296 + (A)n Simple_repeat Simple_repeat 1 27 0 659 203 23 23 chr11 142250482 142250615 -8532938 - MER94 DNA DNA 0 134 2 296 306 184 40 chr11 142252929 142253157 -8530396 - MIR SINE MIR 0 262 4 354 235 168 7 chr11 142253666 142253815 -8529738 + L1MC4a LINE L1 4531 4703 -1443 270 0 0 0 chr11 142253933 142253963 -8529590 + (TA)n Simple_repeat Simple_repeat 1 30 0 261 0 0 0 chr11 142253962 142253991 -8529562 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 235 320 13 39 chr11 142254106 142254337 -8529216 + L1MC4a LINE L1 5027 5251 -895 23 0 0 0 chr11 142254361 142254384 -8529169 + AT_rich Low_complexity Low_complexity 1 23 0 715 234 100 92 chr11 142254431 142254889 -8528664 + L1MC4a LINE L1 5401 5862 -1946 1455 66 0 0 chr11 142255030 142255211 -8528342 + AluY SINE Alu 129 309 -2 193 253 126 2 chr11 142257705 142257789 -8525764 + MIR SINE MIR 50 141 -67 2140 150 17 3 chr11 142258383 142258729 -8524824 - MLT1A1 LTR MaLR -14 351 1 2130 80 35 3 chr11 142259903 142260192 -8523361 + AluY SINE Alu 1 298 -13 601 284 107 19 chr11 142260224 142260651 -8522902 + L1ME4a LINE L1 5441 5914 -207 256 248 133 9 chr11 142260687 142260792 -8522761 + L1ME4a LINE L1 5999 6116 -5 788 33 0 0 chr11 142262299 142262389 -8521164 + 5S rRNA rRNA 1 90 -31 220 238 0 0 chr11 142262418 142262460 -8521093 + L3 LINE CR1 1524 1565 -12 25 0 0 0 chr11 142263246 142263271 -8520282 + AT_rich Low_complexity Low_complexity 1 25 0 205 220 17 17 chr11 142264800 142264859 -8518694 + GA-rich Low_complexity Low_complexity 1 59 0 188 281 31 31 chr11 142264965 142265029 -8518524 - L2 LINE L2 0 3272 3209 577 302 101 34 chr11 142265067 142265445 -8518108 + MLT1I LTR MaLR 1 403 -6 1197 236 68 75 chr11 142265845 142266396 -8517157 + MLT1H LTR MaLR 1 549 0 882 280 26 19 chr11 142266464 142266728 -8516825 + MLT1H LTR MaLR 13 278 -271 363 224 115 51 chr11 142266756 142266912 -8516641 + MLT1H LTR MaLR 384 549 0 385 183 183 13 chr11 142267305 142267416 -8516137 + L1MB5 LINE L1 6032 6167 -7 2383 94 0 3 chr11 142267517 142267825 -8515728 + AluSx SINE Alu 1 307 -5 672 243 37 28 chr11 142268151 142268365 -8515188 - L2 LINE L2 0 3313 3098 1428 243 73 60 chr11 142268457 142268992 -8514561 + MLT1E LTR MaLR 52 593 0 1204 246 149 31 chr11 142268995 142269417 -8514136 - L2 LINE L2 -338 2976 2505 189 0 0 0 chr11 142270193 142270214 -8513339 + (A)n Simple_repeat Simple_repeat 1 21 0 265 318 47 9 chr11 142270884 142270991 -8512562 - MIR SINE MIR -146 116 6 227 333 17 67 chr11 142271100 142271155 -8512398 + L2 LINE L2 3185 3241 -72 2257 63 49 0 chr11 142271155 142271440 -8512113 - AluSp SINE Alu -14 299 1 227 333 17 67 chr11 142271440 142271504 -8512049 + L2 LINE L2 3241 3298 -15 276 280 166 40 chr11 142272219 142272394 -8511159 - L2 LINE L2 -179 3093 2897 839 287 40 37 chr11 142272398 142272774 -8510779 + L1ME4a LINE L1 5478 5854 -267 591 239 175 104 chr11 142273375 142273877 -8509676 + MLT1H LTR MaLR 12 549 0 717 288 28 21 chr11 142274322 142274610 -8508943 - L1ME LINE L1 -331 5790 5501 415 248 161 91 chr11 142274995 142275237 -8508316 + MIR SINE MIR 2 260 -2 2367 106 0 0 chr11 142276330 142276641 -8506912 + AluSq SINE Alu 1 311 -2 226 257 29 29 chr11 142276985 142277055 -8506498 - L2 LINE L2 -23 3249 3180 2390 87 0 7 chr11 142277105 142277403 -8506150 + AluSg SINE Alu 1 296 -14 214 213 85 0 chr11 142277641 142277688 -8505865 + L2 LINE L2 3213 3263 -50 1020 223 18 18 chr11 142278019 142278243 -8505310 + MLT1E2 LTR MaLR 5 228 -398 2187 95 10 23 chr11 142278245 142278551 -8505002 + AluSx SINE Alu 1 302 -10 697 205 19 50 chr11 142278999 142279160 -8504393 + L2 LINE L2 3154 3309 -4 195 42 0 0 chr11 142279597 142279621 -8503932 + (TTTTG)n Simple_repeat Simple_repeat 5 28 0 359 183 37 24 chr11 142279638 142279720 -8503833 + L2 LINE L2 3158 3240 -32 2421 88 0 3 chr11 142279736 142280044 -8503509 + AluSg SINE Alu 1 307 -3 2358 85 10 0 chr11 142281008 142281314 -8502239 - AluY SINE Alu -2 309 1 904 224 109 72 chr11 142281507 142281708 -8501845 + MER2 DNA MER2_type 1 220 -125 2049 118 77 24 chr11 142281708 142282048 -8501505 + MER46B DNA MER2_type 4 236 0 904 224 109 72 chr11 142282048 142282177 -8501376 + MER2 DNA MER2_type 220 343 -2 21 36 0 0 chr11 142282494 142282522 -8501031 + AT_rich Low_complexity Low_complexity 1 28 0 201 128 51 0 chr11 142282530 142282569 -8500984 + T-rich Low_complexity Low_complexity 1 41 0 198 0 0 0 chr11 142284080 142284102 -8499451 + (CA)n Simple_repeat Simple_repeat 1 22 0 296 47 0 23 chr11 142284626 142284669 -8498884 + (TG)n Simple_repeat Simple_repeat 2 43 0 23 33 0 0 chr11 142284829 142284859 -8498694 + AT_rich Low_complexity Low_complexity 1 30 0 1389 144 5 14 chr11 142285273 142285488 -8498065 + AluJo SINE Alu 82 294 -18 2420 96 0 0 chr11 142285846 142286159 -8497394 + AluSq SINE Alu 1 313 0 235 234 106 11 chr11 142286274 142286368 -8497185 + MIR SINE MIR 147 249 -13 192 250 0 0 chr11 142287719 142287763 -8495790 - L2 LINE L2 -8 3305 3262 2294 102 3 0 chr11 142288701 142288995 -8494558 + AluSq SINE Alu 1 295 -18 2182 79 7 0 chr11 142289133 142289436 -8494117 + AluY SINE Alu 1 305 0 180 196 87 0 chr11 142289909 142289955 -8493598 - L2 LINE L2 -1 3312 3263 2346 83 3 17 chr11 142290072 142290372 -8493181 - AluSc SINE Alu -13 296 1 1533 233 68 44 chr11 142291003 142291502 -8492051 + MLT1E LTR MaLR 81 591 -2 1251 137 0 0 chr11 142291505 142291687 -8491866 + AluSg/x SINE Alu 129 310 0 217 158 88 53 chr11 142293267 142293324 -8490229 + L2 LINE L2 3214 3272 0 539 303 145 28 chr11 142293710 142294340 -8489213 + L2 LINE L2 2545 3311 -2 695 257 92 10 chr11 142294394 142294600 -8488953 - MIR SINE MIR -30 232 10 497 312 80 60 chr11 142294782 142295083 -8488470 + L2 LINE L2 2965 3271 -1 395 250 31 31 chr11 142297139 142297267 -8486286 - L2 LINE L2 0 3313 3186 2228 88 0 47 chr11 142297596 142297913 -8485640 - AluSg SINE Alu -8 302 1 993 83 0 0 chr11 142297917 142298038 -8485515 - AluSq/x SINE Alu -179 133 13 254 284 77 45 chr11 142298091 142298246 -8485307 + L1ME3A LINE L1 5934 6093 -77 486 204 121 15 chr11 142300054 142300186 -8483367 - THE1C LTR MaLR -227 148 3 303 265 27 41 chr11 142300233 142300380 -8483173 - L1M LINE L1 -761 5404 5257 399 238 10 0 chr11 142300565 142300666 -8482887 - L1ME2 LINE L1 -17 6147 6046 511 272 113 8 chr11 142300674 142300929 -8482624 + MER58 DNA MER1_type 10 2404 -16 888 294 26 21 chr11 142300943 142301331 -8482222 - L1ME2 LINE L1 -112 6052 5663 679 240 7 6 chr11 142301320 142301518 -8482035 - L1M2 LINE L1 -605 5559 5370 * 242 202 40 40 chr11 142301654 142301753 -8481800 - L1ME2 LINE L1 -924 5222 5124 321 282 24 8 chr11 142301815 142301939 -8481614 - L1ME2 LINE L1 -1140 5006 4881 366 292 94 5 chr11 142302067 142302270 -8481283 + L1ME2 LINE L1 5828 6030 -136 * 532 285 50 14 chr11 142302267 142302488 -8481065 + L1ME3 LINE L1 5920 6148 -14 32 43 0 0 chr11 142303182 142303228 -8480325 + AT_rich Low_complexity Low_complexity 1 46 0 194 0 0 37 chr11 142304736 142304763 -8478790 + (TAAAAA)n Simple_repeat Simple_repeat 2 27 0 401 48 48 0 chr11 142306148 142306210 -8477343 + (TTTTC)n Simple_repeat Simple_repeat 1 65 0 284 282 12 0 chr11 142308627 142308712 -8474841 - MER103 DNA DNA -78 88 3 225 333 67 0 chr11 142308803 142308878 -8474675 + MIR SINE MIR 66 145 -63 2166 109 0 0 chr11 142309313 142309596 -8473957 - AluSx SINE Alu -1 311 29 2028 160 0 0 chr11 142309698 142310177 -8473376 + AluSx SINE Alu 1 479 0 2101 120 21 0 chr11 142311400 142311691 -8471862 + AluSx SINE Alu 1 297 -15 200 59 29 0 chr11 142312345 142312379 -8471174 + (TA)n Simple_repeat Simple_repeat 2 36 0 187 363 35 9 chr11 142312401 142312514 -8471039 + MIR3 SINE MIR 83 198 -10 249 360 64 32 chr11 142312624 142312749 -8470804 + MIR3 SINE MIR 14 142 -66 2136 107 30 0 chr11 142312809 142313108 -8470445 + AluSx SINE Alu 1 308 -4 5350 145 32 78 chr11 142313108 142314071 -8469482 - L1M1 LINE L1 -743 5403 4602 333 0 0 0 chr11 142314071 142314108 -8469445 + (TG)n Simple_repeat Simple_repeat 2 38 0 5350 145 32 78 chr11 142314108 142314566 -8468987 - L1M1 LINE L1 -1544 4602 4124 390 347 19 56 chr11 142314719 142314932 -8468621 - L3 LINE CR1 -4 1573 1369 545 297 33 33 chr11 142315043 142315255 -8468298 + L2 LINE L2 3100 3311 -2 433 353 142 29 chr11 142315284 142315692 -8467861 - L3 LINE CR1 -407 1170 717 540 155 0 0 chr11 142315705 142315789 -8467764 + AluJ/FLAM SINE Alu 12 95 -217 1522 131 41 24 chr11 142318438 142318729 -8464824 - LTR60 LTR ERV1 0 586 291 943 83 42 7 chr11 142318975 142319119 -8464434 - L1PA8 LINE L1 -14 6158 6010 327 194 30 0 chr11 142319491 142319558 -8463995 - L1ME3A LINE L1 -97 6073 6005 235 157 325 0 chr11 142319744 142319827 -8463726 - MLT1J1 LTR MaLR -336 110 1 627 111 25 0 chr11 142319918 142320033 -8463520 + LTR54 LTR ERV1 369 510 0 258 388 30 15 chr11 142320559 142320693 -8462860 + MIR3 SINE MIR 4 139 -69 2585 71 17 0 chr11 142321199 142321553 -8462000 - L1PA8 LINE L1 0 6172 5813 228 67 0 0 chr11 142322267 142322297 -8461256 + (A)n Simple_repeat Simple_repeat 1 30 0 603 320 68 17 chr11 142323130 142323424 -8460129 + MLT1L LTR MaLR 305 613 -2 904 115 34 7 chr11 142323644 142323792 -8459761 - L1PA14 LINE L1 -3 6158 6007 384 205 0 0 chr11 142323792 142323870 -8459683 + L1P LINE L1 2840 2917 -3229 307 222 0 0 chr11 142324011 142324074 -8459479 + MER46A DNA MER2_type 1 63 -173 4246 102 9 12 chr11 142324090 142324274 -8459279 - L1PB1 LINE L1 0 6151 5968 3858 75 68 4 chr11 142324274 142324819 -8458734 + LTR19B LTR ERV1 1 580 0 4246 102 9 12 chr11 142324819 142325280 -8458273 - L1PB1 LINE L1 -183 5968 5508 2029 209 12 12 chr11 142325280 142325783 -8457770 + L1 LINE L1 2704 3206 -2940 1113 160 5 11 chr11 142325784 142325971 -8457582 + MER46A DNA MER2_type 51 236 0 641 172 28 28 chr11 142326382 142326527 -8457026 + L1MA9 LINE L1 5859 6003 -309 1244 132 0 0 chr11 142327280 142327454 -8456099 + AluSg/x SINE Alu 129 302 -8 3237 208 51 25 chr11 142327567 142328756 -8454797 + L1MB8 LINE L1 4832 6172 -6 709 290 75 22 chr11 142328789 142329293 -8454260 + L1M4 LINE L1 2896 3426 -2720 309 265 26 73 chr11 142329661 142329812 -8453741 - L1ME3A LINE L1 -15 6155 6012 301 194 224 45 chr11 142329941 142330075 -8453478 - MLT1J1 LTR MaLR -288 158 1 26 98 0 0 chr11 142330419 142330501 -8453052 + AT_rich Low_complexity Low_complexity 1 82 0 2118 108 41 0 chr11 142330914 142331209 -8452344 + AluSg SINE Alu 1 307 -3 34 0 0 0 chr11 142332491 142332525 -8451028 + AT_rich Low_complexity Low_complexity 1 34 0 3689 9 0 12 chr11 142332766 142333196 -8450357 + L1PA2 LINE L1 5728 6152 -3 596 154 17 8 chr11 142333393 142333510 -8450043 - L1PA8 LINE L1 -1 6171 6054 264 331 69 31 chr11 142333694 142333824 -8449729 + MIR3 SINE MIR 5 139 -69 7581 29 0 0 chr11 142333979 142335105 -8448448 - L1PA4 LINE L1 0 6155 5029 210 150 0 0 chr11 142337425 142337465 -8446088 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1713 175 0 25 chr11 142337889 142338209 -8445344 - AluJo SINE Alu 0 312 1 1302 220 82 12 chr11 142338241 142338582 -8444971 - MLT1A1 LTR MaLR 0 365 1 506 265 117 30 chr11 142338760 142338990 -8444563 + MIR SINE MIR 10 259 -3 456 19 0 0 chr11 142339048 142339101 -8444452 + (TG)n Simple_repeat Simple_repeat 2 54 0 1364 142 19 86 chr11 142339108 142339375 -8444178 - AluJb SINE Alu -41 271 23 289 370 0 59 chr11 142339402 142339537 -8444016 + L2 LINE L2 3137 3263 -9 214 146 18 36 chr11 142340290 142340345 -8443208 + (CATA)n Simple_repeat Simple_repeat 3 56 0 6186 152 69 10 chr11 142340402 142341564 -8441989 - Tigger3b DNA MER2_type 0 1231 2 13034 133 21 10 chr11 142341571 142342567 -8440986 + Tigger1 DNA MER2_type 1 984 -1434 2040 161 0 0 chr11 142342567 142342877 -8440676 + AluSx SINE Alu 1 310 -2 13034 133 21 10 chr11 142342877 142343957 -8439596 + Tigger1 DNA MER2_type 984 2100 -318 9496 189 36 7 chr11 142343957 142347895 -8435658 + L1MA5 LINE L1 2224 6299 -1 6969 53 5 0 chr11 142347937 142348809 -8434744 + L1PA7 LINE L1 5273 6148 -6 562 156 0 0 chr11 142348809 142348918 -8434635 - Charlie5 DNA MER1_type -108 2504 2396 488 220 244 0 chr11 142349335 142349503 -8434050 - HAL1b LINE L1 -585 763 555 521 268 13 0 chr11 142349600 142349753 -8433800 - L1MA10 LINE L1 0 6334 6180 633 242 62 37 chr11 142349767 142350284 -8433269 + L1MC/D LINE L1 3884 4525 -1621 * 637 189 63 26 chr11 142350269 142350449 -8433104 - L1MB7 LINE L1 -340 5822 5655 1167 239 36 56 chr11 142350539 142350987 -8432566 + L1MC/D LINE L1 4528 4966 -1180 1107 140 225 52 chr11 142350987 142351351 -8432202 + MSTC LTR MaLR 2 428 0 1031 280 59 15 chr11 142351351 142352066 -8431487 + L1MC/D LINE L1 4961 5710 -649 199 384 48 14 chr11 142353685 142353831 -8429722 + MIR3 SINE MIR 18 168 -40 192 125 0 0 chr11 142354982 142355014 -8428539 + (A)n Simple_repeat Simple_repeat 1 32 0 922 294 56 42 chr11 142356572 142356977 -8426576 + L1M3d LINE L1 9 689 -5202 722 162 7 0 chr11 142357000 142357136 -8426417 + GA-rich Low_complexity Low_complexity 3 139 0 296 337 112 49 chr11 142357167 142357395 -8426158 + L1 LINE L1 170 685 -5206 * 701 208 27 0 chr11 142357391 142357540 -8426013 + L1 LINE L1 3363 3515 -2455 * 2997 252 40 30 chr11 142357538 142358693 -8424860 - L1M4c LINE L1 -2873 3509 2343 460 223 121 23 chr11 142358758 142359072 -8424481 - L1M4c LINE L1 -3908 2476 2121 702 278 169 6 chr11 142359173 142359594 -8423959 - L1M4c LINE L1 -4145 2238 1450 603 87 10 48 chr11 142359594 142359697 -8423856 - L1PA10 LINE L1 -1 6167 6069 5267 60 0 0 chr11 142359697 142360361 -8423192 + L1PA7 LINE L1 5482 6148 -6 206 304 24 35 chr11 142361604 142361735 -8421818 + MIR SINE MIR 20 144 -64 231 220 0 0 chr11 142362000 142362059 -8421494 + L1MA4 LINE L1 6235 6293 -7 367 288 58 22 chr11 142364749 142364888 -8418665 + MIR SINE MIR 119 262 0 285 431 0 0 chr11 142364944 142365060 -8418493 + L2 LINE L2 3137 3252 -20 231 222 0 0 chr11 142365864 142365918 -8417635 + T-rich Low_complexity Low_complexity 1 54 0 2050 10 0 0 chr11 142365919 142366220 -8417333 - L1PA2 LINE L1 0 6155 5717 561 297 93 55 chr11 142366220 142366583 -8416970 - MLT1L LTR MaLR -64 533 108 2562 195 26 30 chr11 142366996 142367770 -8415783 + L1MB8 LINE L1 5174 5938 -240 22 35 0 0 chr11 142369582 142369611 -8413942 + AT_rich Low_complexity Low_complexity 1 29 0 2236 99 3 0 chr11 142369842 142370135 -8413418 - AluSp SINE Alu -19 294 1 2542 201 25 62 chr11 142370872 142371522 -8412031 - LTR27 LTR ERV1 0 636 11 259 181 31 78 chr11 142372000 142372080 -8411473 + MIR SINE MIR 49 124 -84 688 242 57 16 chr11 142372888 142373082 -8410471 - MER51D LTR ERV1 0 657 456 246 239 14 28 chr11 142373593 142373664 -8409889 + GA-rich Low_complexity Low_complexity 3 72 0 550 242 40 124 chr11 142375702 142375975 -8407578 + MIR SINE MIR 5 254 -8 646 236 55 59 chr11 142376013 142376233 -8407320 - MER20 DNA MER1_type 0 219 1 181 361 113 31 chr11 142376263 142376590 -8406963 + L2 LINE L2 2289 2642 -672 248 245 24 115 chr11 142376591 142376799 -8406754 - HAL1 LINE L1 -245 2262 2074 1959 138 0 0 chr11 142376908 142377198 -8406355 - AluSx SINE Alu -9 303 14 366 293 0 0 chr11 142377198 142377304 -8406249 - L1M4 LINE L1 -1329 4817 4712 854 310 43 34 chr11 142377306 142377722 -8405831 - LTR16B LTR ERVL -2 462 43 29 28 0 0 chr11 142377845 142377881 -8405672 + AT_rich Low_complexity Low_complexity 1 36 0 642 233 166 0 chr11 142377908 142378071 -8405482 + AluJo SINE Alu 1 190 -122 544 184 0 0 chr11 142378148 142378235 -8405318 + AluJo SINE Alu 179 265 -47 543 243 32 11 chr11 142382136 142382321 -8401232 - L1MD3 LINE L1 -12 7983 7795 333 47 0 0 chr11 142382322 142382365 -8401188 + (TG)n Simple_repeat Simple_repeat 2 44 0 1855 175 0 10 chr11 142382445 142382759 -8400794 - AluJb SINE Alu -1 311 1 574 318 42 4 chr11 142382759 142383020 -8400533 - HAL1 LINE L1 -2132 375 105 32 0 0 0 chr11 142383028 142383060 -8400493 + AT_rich Low_complexity Low_complexity 1 32 0 11742 25 0 0 chr11 142383086 142385233 -8398320 - L1PA3 LINE L1 -3 6152 4006 188 363 68 34 chr11 142385624 142385651 -8397902 - MIR SINE MIR -26 236 211 2286 100 3 0 chr11 142385651 142385950 -8397603 - AluSc SINE Alu -9 300 1 188 363 68 34 chr11 142385950 142386068 -8397485 - MIR SINE MIR -51 211 86 235 371 46 13 chr11 142386634 142386871 -8396682 - LTR33A LTR ERVL 0 523 279 1223 117 61 10 chr11 142387185 142387381 -8396172 + MER30 DNA MER1_type 1 206 -24 1121 278 69 18 chr11 142387395 142387993 -8395560 - L1M4 LINE L1 -797 5349 4722 19246 31 12 0 chr11 142387993 142391125 -8392428 + L1PA3 LINE L1 3039 6189 0 783 333 34 29 chr11 142391147 142391565 -8391988 - LTR16B LTR ERVL -2 462 43 653 227 166 0 chr11 142391749 142391912 -8391641 + AluJo SINE Alu 1 190 -122 709 170 0 0 chr11 142391989 142392101 -8391452 + AluJo SINE Alu 179 290 -22 216 0 0 0 chr11 142392105 142392129 -8391424 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2079 130 7 0 chr11 142394525 142394824 -8388729 - AluSq SINE Alu -12 301 1 236 320 19 10 chr11 142395173 142395276 -8388277 + L1ME3A LINE L1 6055 6158 -12 929 206 62 48 chr11 142396444 142396716 -8386837 - L1MD2 LINE L1 -15 6344 6069 1688 165 79 0 chr11 142396716 142396995 -8386558 - AluJb SINE Alu -11 301 1 1604 147 39 0 chr11 142397037 142397349 -8386204 - L1MA7 LINE L1 -2 6289 5966 1521 155 6 115 chr11 142397350 142397699 -8385854 - AluJo SINE Alu 0 312 2 26 74 0 0 chr11 142397700 142397754 -8385799 + AT_rich Low_complexity Low_complexity 1 54 0 712 229 92 43 chr11 142397890 142398051 -8385502 - MSTD LTR MaLR 0 396 244 426 20 0 0 chr11 142398051 142398102 -8385451 + (GA)n Simple_repeat Simple_repeat 2 52 0 712 229 92 43 chr11 142398102 142398285 -8385268 - MSTD LTR MaLR -152 244 1 10601 46 48 5 chr11 142399685 142401006 -8382547 - SVA Other Other -5 1381 5 639 249 100 54 chr11 142402991 142403232 -8380321 + MIR SINE MIR 5 256 -6 357 24 0 0 chr11 142403645 142403687 -8379866 + (CA)n Simple_repeat Simple_repeat 1 42 0 624 286 30 62 chr11 142403689 142404186 -8379367 - HAL1 LINE L1 -306 2201 1721 825 163 84 0 chr11 142404200 142404378 -8379175 - L1MC2 LINE L1 -18 6326 6134 405 205 77 0 chr11 142404380 142404497 -8379056 - L1MC3 LINE L1 -200 7585 7460 286 329 30 0 chr11 142404478 142404642 -8378911 - HAL1 LINE L1 -773 1734 1566 * 1167 264 69 18 chr11 142404705 142405330 -8378223 - L1M4 LINE L1 -1550 4596 3940 1829 192 118 23 chr11 142405524 142405956 -8377597 + MER66A LTR ERV1 6 478 0 259 309 88 22 chr11 142406134 142406270 -8377283 + MIR SINE MIR 4 148 -114 1338 259 44 41 chr11 142406638 142407205 -8376348 + HAL1 LINE L1 1 569 -1938 237 200 0 0 chr11 142407211 142407261 -8376292 + HAL1 LINE L1 1605 1654 -853 490 305 121 23 chr11 142407284 142407632 -8375921 + MLT1J2 LTR MaLR 10 391 -59 638 260 69 30 chr11 142407665 142408069 -8375484 + HAL1 LINE L1 1943 2362 -145 354 107 0 0 chr11 142408532 142408588 -8374965 + (TA)n Simple_repeat Simple_repeat 2 57 0 237 279 35 0 chr11 142408654 142408740 -8374813 - L1MC4a LINE L1 -1645 6163 6075 3403 113 0 8 chr11 142408823 142409352 -8374201 - Tigger3b DNA MER2_type 0 1232 708 3291 144 23 11 chr11 142409330 142409893 -8373660 - Tigger3b DNA MER2_type -661 570 1 * 231 220 0 0 chr11 142409925 142409975 -8373578 - L1MC4a LINE L1 -1880 5928 5879 329 290 56 19 chr11 142410135 142410297 -8373256 - L1MC4a LINE L1 -1926 5882 5715 259 242 76 0 chr11 142410440 142410506 -8373047 + LTR50 LTR ERVL 48 118 -677 348 275 0 75 chr11 142411192 142411312 -8372241 + L2 LINE L2 3161 3271 -1 275 296 23 34 chr11 142411821 142411909 -8371644 - L3 LINE CR1 -46 1531 1445 198 0 0 0 chr11 142412429 142412451 -8371102 + (A)n Simple_repeat Simple_repeat 1 22 0 309 236 189 19 chr11 142412737 142412843 -8370710 + L2 LINE L2 3189 3312 -1 245 325 70 9 chr11 142413506 142413620 -8369933 + MIR SINE MIR 20 140 -122 25 51 0 0 chr11 142413950 142413989 -8369564 + AT_rich Low_complexity Low_complexity 1 39 0 2432 59 0 10 chr11 142414138 142414442 -8369111 - AluY SINE Alu -10 301 1 552 279 67 35 chr11 142414445 142414879 -8368674 - L1M4 LINE L1 -2174 3972 3525 856 325 80 49 chr11 142414913 142415680 -8367873 - L1M4 LINE L1 -2665 3481 2623 291 54 0 0 chr11 142415680 142415717 -8367836 + (CA)n Simple_repeat Simple_repeat 2 38 0 856 325 80 49 chr11 142415717 142416204 -8367349 - L1M4 LINE L1 -3523 2623 2152 593 194 8 0 chr11 142416205 142416334 -8367219 - L1MA8 LINE L1 -3 6288 6159 619 168 8 25 chr11 142416341 142416460 -8367093 - MER44D DNA MER2_type -4 601 613 228 133 0 22 chr11 142416557 142416602 -8366951 - MLT2B3 LTR ERVL -4 550 507 2486 180 49 8 chr11 142416641 142417129 -8366424 - MLT2B3 LTR ERVL -39 515 8 526 290 106 51 chr11 142417746 142418180 -8365373 + MLT1J LTR MaLR 3 460 -51 311 312 71 14 chr11 142418576 142418717 -8364836 - L2 LINE L2 -1054 2260 2112 315 130 0 0 chr11 142419905 142419959 -8363594 + (CA)n Simple_repeat Simple_repeat 2 55 0 387 0 0 0 chr11 142423157 142423200 -8360353 + (CA)n Simple_repeat Simple_repeat 1 43 0 539 229 0 0 chr11 142423391 142423496 -8360057 - MER94 DNA DNA -15 119 15 1236 265 63 22 chr11 142423496 142423956 -8359597 + L1ME3A LINE L1 5642 6120 -50 204 294 0 0 chr11 142424036 142424087 -8359466 + MIR SINE MIR 97 147 -115 607 257 29 37 chr11 142424382 142424585 -8358968 + MLT1G1 LTR MaLR 34 197 -370 557 220 0 38 chr11 142424715 142424847 -8358706 + MER6 DNA MER2_type 739 865 0 3284 72 25 0 chr11 142425275 142425708 -8357845 - MLT2A1 LTR ERVL 0 444 1 545 306 56 70 chr11 142425739 142426170 -8357383 + L1MEd LINE L1 56 480 -5639 484 283 37 74 chr11 142426206 142426666 -8356887 + L1MEd LINE L1 598 1040 -5079 234 0 0 0 chr11 142426737 142426763 -8356790 + (TG)n Simple_repeat Simple_repeat 1 26 0 205 182 0 0 chr11 142426986 142427019 -8356534 - L2 LINE L2 -257 3056 3024 325 331 28 28 chr11 142427354 142427535 -8356018 + LTR67 LTR ERVL 373 553 -4 372 216 20 20 chr11 142428551 142428653 -8354900 + LTR24B LTR ERV1 1 102 -474 466 208 26 39 chr11 142428900 142429054 -8354499 + LTR24B LTR ERV1 418 569 -7 770 197 0 0 chr11 142429958 142430090 -8353463 + FLAM_C SINE Alu 1 132 -11 1020 90 0 0 chr11 142430143 142430288 -8353265 + (TG)n Simple_repeat Simple_repeat 2 146 0 252 226 32 0 chr11 142430348 142430410 -8353143 + L1ME4a LINE L1 5977 6040 -81 30 27 0 0 chr11 142430481 142430518 -8353035 + AT_rich Low_complexity Low_complexity 1 37 0 501 301 127 22 chr11 142430930 142431159 -8352394 + MIR SINE MIR 8 260 -2 1704 237 28 8 chr11 142431735 142432207 -8351346 + L1MC4 LINE L1 6842 7322 -720 457 278 49 76 chr11 142432916 142433060 -8350493 - L2 LINE L2 0 3272 3133 288 227 45 0 chr11 142433686 142433796 -8349757 + L1ME LINE L1 5706 5820 -301 1317 166 73 131 chr11 142434262 142434479 -8349074 - MLT1A2 LTR MaLR 0 374 189 411 113 0 0 chr11 142434479 142434541 -8349012 + (TG)n Simple_repeat Simple_repeat 1 62 0 1317 166 73 131 chr11 142434541 142434720 -8348833 - MLT1A2 LTR MaLR -185 189 1 347 337 8 0 chr11 142434761 142434899 -8348654 - MIR3 SINE MIR -31 177 38 277 324 49 70 chr11 142434964 142435106 -8348447 - MIR3 SINE MIR -67 141 3 662 287 51 15 chr11 142435458 142435882 -8347671 - LTR33 LTR ERVL 0 521 29 958 171 0 0 chr11 142436081 142436239 -8347314 - AluSg/x SINE Alu -8 302 145 288 318 49 30 chr11 142436684 142436832 -8346721 + MIR3 SINE MIR 10 170 -38 220 263 256 25 chr11 142438963 142439123 -8344430 - MIR SINE MIR -53 209 13 291 287 16 47 chr11 142439735 142439864 -8343689 + MER5A DNA MER1_type 3 138 -51 248 294 102 28 chr11 142440867 142441044 -8342509 + LTR16C LTR ERVL 299 488 -3 371 268 46 33 chr11 142441452 142441605 -8341948 + MIR SINE MIR 99 253 -9 200 232 18 18 chr11 142442351 142442407 -8341146 + (TG)n Simple_repeat Simple_repeat 1 56 0 201 200 0 0 chr11 142443346 142443381 -8340172 - L3 LINE CR1 -9 1568 1534 352 306 20 0 chr11 142443581 142443679 -8339874 - MIR SINE MIR -19 243 144 208 300 193 7 chr11 142444160 142444300 -8339253 + MIR SINE MIR 22 187 -75 1435 182 71 7 chr11 142444476 142444585 -8338968 + AluJo SINE Alu 11 112 -200 204 40 0 0 chr11 142444585 142444610 -8338943 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1435 182 71 7 chr11 142444610 142444769 -8338784 + AluJo SINE Alu 112 296 -16 979 234 92 0 chr11 142444796 142445035 -8338518 + L1MA5A LINE L1 14 274 -6515 5955 235 36 54 chr11 142445043 142448260 -8335293 + L1MA5A LINE L1 898 4117 -2671 * 7601 138 30 4 chr11 142448258 142450684 -8332869 + L1MA5A LINE L1 4448 6936 -3 195 274 32 16 chr11 142451735 142451797 -8331756 + MIR SINE MIR 78 140 -68 30 0 0 0 chr11 142452352 142452382 -8331171 + AT_rich Low_complexity Low_complexity 1 30 0 242 282 160 21 chr11 142452648 142452836 -8330717 + L2 LINE L2 2302 2515 -799 338 271 51 47 chr11 142452926 142453181 -8330372 - L1MC5 LINE L1 -33 7928 7673 253 209 0 72 chr11 142453426 142453565 -8329988 - HAL1 LINE L1 -1335 1172 1044 21 57 0 0 chr11 142453759 142453794 -8329759 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr11 142454738 142454766 -8328787 + AT_rich Low_complexity Low_complexity 1 28 0 2124 230 40 10 chr11 142454840 142455344 -8328209 + LTR53 LTR ERVL 1 519 0 753 194 29 40 chr11 142456045 142456186 -8327367 + MER5B DNA MER1_type 6 146 -32 4023 85 273 0 chr11 142456186 142456834 -8326719 + LTR12 LTR ERV1 2 826 0 753 194 29 40 chr11 142456834 142456867 -8326686 + MER5B DNA MER1_type 146 178 0 2295 101 0 10 chr11 142456974 142457280 -8326273 + AluSc SINE Alu 6 308 -1 284 223 80 36 chr11 142458940 142459052 -8324501 + LTR37B LTR ERV1 188 304 -164 251 238 12 36 chr11 142459120 142459204 -8324349 + LTR37B LTR ERV1 333 414 -54 366 335 149 9 chr11 142459248 142459463 -8324090 - MIR SINE MIR -3 259 15 191 256 233 0 chr11 142459820 142459906 -8323647 - MIR SINE MIR -60 202 97 1546 141 131 0 chr11 142460503 142460801 -8322752 + MER44D DNA MER2_type 3 609 0 232 191 0 0 chr11 142461471 142461513 -8322040 + MIR SINE MIR 215 256 -6 1779 133 19 31 chr11 142461637 142461961 -8321592 + L1MC1 LINE L1 6014 6333 0 474 237 30 0 chr11 142463177 142463312 -8320241 - HAL1 LINE L1 -1954 553 415 250 258 61 0 chr11 142463412 142463478 -8320075 + MIR SINE MIR 95 164 -98 310 308 96 25 chr11 142463639 142463837 -8319716 - MIR SINE MIR -50 212 1 251 256 60 54 chr11 142464471 142464639 -8318914 + LTR67 LTR ERVL 384 552 -5 577 226 208 15 chr11 142465078 142465343 -8318210 - L1ME3 LINE L1 -96 6066 5751 1010 114 0 0 chr11 142465382 142465531 -8318022 + L1PA10 LINE L1 6016 6164 -4 277 282 138 39 chr11 142466076 142466257 -8317296 - L2 LINE L2 -255 3017 2819 349 300 8 0 chr11 142467597 142467717 -8315836 - LTR33 LTR ERVL -400 121 1 291 113 0 0 chr11 142468245 142468298 -8315255 + (T)n Simple_repeat Simple_repeat 1 53 0 1744 114 8 23 chr11 142468474 142468738 -8314815 - AluSx SINE Alu -52 260 1 231 377 33 11 chr11 142468800 142468983 -8314570 + LTR16C LTR ERVL 89 275 -216 2371 253 37 31 chr11 142469962 142470886 -8312667 - L1M4 LINE L1 -1343 4803 3875 * 5735 198 133 58 chr11 142470866 142471425 -8312128 - L1MCa LINE L1 -4084 2342 1826 186 43 0 0 chr11 142471425 142471448 -8312105 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5735 198 133 58 chr11 142471448 142473022 -8310531 - L1MCa LINE L1 -4600 1826 49 208 178 22 0 chr11 142473436 142473481 -8310072 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 728 251 32 68 chr11 142473703 142474073 -8309480 + L1M4 LINE L1 4012 4368 -1778 242 236 0 0 chr11 142474128 142474183 -8309370 + L1ME3 LINE L1 4075 4129 -2017 1579 242 70 72 chr11 142474265 142474699 -8308854 + L1ME3 LINE L1 4862 5295 -867 2444 74 0 3 chr11 142474699 142474997 -8308556 - AluY SINE Alu -13 298 2 1579 242 70 72 chr11 142474997 142475093 -8308460 + L1ME3 LINE L1 5295 5390 -772 1798 182 4 0 chr11 142475093 142475373 -8308180 + AluJo SINE Alu 1 281 -31 1711 97 9 0 chr11 142475382 142475608 -8307945 + AluSg/x SINE Alu 66 293 -17 1579 242 70 72 chr11 142475608 142475894 -8307659 + L1ME3 LINE L1 5398 5683 -479 2171 122 0 0 chr11 142475894 142476189 -8307364 + AluSg SINE Alu 1 295 -15 1579 242 70 72 chr11 142476189 142476653 -8306900 + L1ME3 LINE L1 5683 6162 0 321 374 53 26 chr11 142477615 142477805 -8305748 + MIR3 SINE MIR 3 197 -11 302 200 15 15 chr11 142479049 142479114 -8304439 - MIR SINE MIR -10 252 188 186 216 0 27 chr11 142480189 142480226 -8303327 - MIR SINE MIR -16 246 211 287 293 242 6 chr11 142480278 142480435 -8303118 - MIR SINE MIR -66 196 3 1724 175 148 5 chr11 142480537 142480915 -8302638 + MSTB1 LTR MaLR 1 432 0 488 289 64 32 chr11 142481226 142481475 -8302078 - L2 LINE L2 -4 3309 3053 38 0 0 0 chr11 142482178 142482216 -8301337 + AT_rich Low_complexity Low_complexity 1 38 0 452 255 43 21 chr11 142483655 142483796 -8299757 + MIR SINE MIR 14 157 -105 275 339 79 8 chr11 142484459 142484586 -8298967 + MIR SINE MIR 19 154 -108 326 232 32 0 chr11 142484818 142484913 -8298640 - L1MEc LINE L1 -2581 3634 3537 5053 35 0 0 chr11 142484922 142485557 -8297996 - L1PA3 LINE L1 -965 5181 4547 7747 22 0 0 chr11 142485557 142486526 -8297027 + L1PA3 LINE L1 5187 6155 0 2761 262 47 24 chr11 142486533 142488215 -8295338 - L1MEc LINE L1 -2688 3527 1844 553 370 26 0 chr11 142488262 142488489 -8295064 + LTR16B LTR ERVL 4 236 -228 248 274 0 0 chr11 142488565 142488616 -8294937 + LTR16B LTR ERVL 414 464 0 184 208 0 83 chr11 142488729 142488777 -8294776 + L2 LINE L2 3259 3302 -11 342 0 0 0 chr11 142488974 142489012 -8294541 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 923 99 0 0 chr11 142489039 142489170 -8294383 - L1PA11 LINE L1 -4 6170 6040 251 257 129 0 chr11 142489263 142489333 -8294220 - MIR SINE MIR -116 146 68 359 333 75 15 chr11 142490479 142490680 -8292873 - HAL1 LINE L1 -1618 889 677 442 288 42 74 chr11 142490683 142490968 -8292585 - L1ME LINE L1 -4247 2014 1739 706 205 37 0 chr11 142491012 142491173 -8292380 - L1M3 LINE L1 -372 5796 5630 * 1676 281 93 51 chr11 142491171 142491429 -8292124 - L1ME LINE L1 -4532 1548 1302 210 37 0 0 chr11 142491429 142491456 -8292097 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1676 281 93 51 chr11 142491456 142492802 -8290751 - L1ME LINE L1 -4778 1302 11 565 251 120 45 chr11 142492899 142493190 -8290363 - L1ME3 LINE L1 -88 6074 5762 183 100 0 0 chr11 142493643 142493673 -8289880 + (T)n Simple_repeat Simple_repeat 1 30 0 2344 108 0 0 chr11 142493793 142494099 -8289454 - AluSx SINE Alu -6 306 1 407 250 9 0 chr11 142495333 142495441 -8288112 - LTR33 LTR ERVL -400 121 13 2274 82 0 0 chr11 142495441 142495741 -8287812 + AluY SINE Alu 1 300 0 425 283 84 11 chr11 142496393 142496584 -8286969 + LTR16C LTR ERVL 72 276 -215 658 258 19 19 chr11 142497036 142497053 -8286500 + MER5A DNA MER1_type 1 17 -172 267 333 69 13 chr11 142497053 142497212 -8286341 - MER5A DNA MER1_type -3 186 19 1764 181 23 0 chr11 142498870 142499169 -8284384 + AluJo SINE Alu 1 306 -6 778 214 6 0 chr11 142499914 142500082 -8283471 - L1MD1 LINE L1 -377 5982 5814 1240 142 43 30 chr11 142500084 142500317 -8283236 + L1MD1 LINE L1 6005 6240 -2 5739 79 0 6 chr11 142500825 142502010 -8281543 - L1PA13 LINE L1 0 6155 5276 9489 23 0 0 chr11 142502011 142503170 -8280383 + L1P LINE L1 3491 4649 -1497 7098 159 139 6 chr11 142503169 142504039 -8279514 - L1P LINE L1 -844 5953 5200 * 378 0 0 0 chr11 142504039 142504081 -8279472 + (TG)n Simple_repeat Simple_repeat 2 43 0 7098 159 139 6 chr11 142504081 142504777 -8278776 - L1P LINE L1 -1597 5200 4178 11284 192 52 18 chr11 142504781 142507670 -8275883 - L1PA13 LINE L1 -3782 3015 1 749 306 87 29 chr11 142507836 142509202 -8274351 + L1MC/D LINE L1 4109 5550 -749 1359 252 104 3 chr11 142509210 142509814 -8273739 + L1ME3 LINE L1 4561 5225 -921 615 165 16 24 chr11 142509830 142509957 -8273596 + L1PA15 LINE L1 6038 6163 -2 1400 247 115 15 chr11 142510009 142510531 -8273022 + L1ME3 LINE L1 5567 6140 -22 2001 103 0 63 chr11 142511019 142511341 -8272212 + AluSg SINE Alu 1 303 0 547 97 138 0 chr11 142511415 142511560 -8271993 - MER33 DNA MER1_type -8 316 152 927 139 0 14 chr11 142511569 142511713 -8271840 + FLAM_C SINE Alu 1 142 -1 483 198 38 89 chr11 142511715 142511872 -8271681 - MER33 DNA MER1_type -175 149 1 386 314 48 37 chr11 142512346 142512534 -8271019 + MIR3 SINE MIR 6 195 -13 292 291 106 14 chr11 142514232 142514373 -8269180 - MIR SINE MIR -103 159 6 182 324 44 0 chr11 142514956 142515024 -8268529 - MIR SINE MIR -66 196 126 263 320 60 60 chr11 142516432 142516682 -8266871 + L2 LINE L2 2129 2378 -936 292 297 11 0 chr11 142516772 142516863 -8266690 - MER94 DNA DNA -15 119 28 444 286 60 24 chr11 142516872 142517040 -8266513 + MIR SINE MIR 18 191 -71 35 88 0 0 chr11 142517063 142517154 -8266399 + AT_rich Low_complexity Low_complexity 1 91 0 358 373 28 23 chr11 142517752 142517929 -8265624 + MIR SINE MIR 12 189 -73 268 333 28 0 chr11 142519072 142519180 -8264373 - L3b LINE CR1 -119 1464 1354 183 333 56 28 chr11 142519200 142519308 -8264245 + MIR SINE MIR 37 147 -115 480 100 0 0 chr11 142519324 142519384 -8264169 + FLAM_A SINE Alu 58 117 -25 331 277 71 40 chr11 142519393 142519531 -8264022 + L1MEc LINE L1 802 934 -5462 1566 161 4 8 chr11 142519531 142519785 -8263768 + AluJb SINE Alu 1 253 -59 2001 106 7 0 chr11 142519785 142520058 -8263495 + AluSc SINE Alu 21 295 -14 331 277 71 40 chr11 142520058 142520171 -8263382 + L1MEc LINE L1 933 1062 -5334 508 277 292 7 chr11 142520489 142520900 -8262653 + L2 LINE L2 1911 2438 -876 348 177 5 2 chr11 142521143 142521217 -8262336 - L1ME4a LINE L1 -54 6047 1219 610 298 116 0 chr11 142521268 142521604 -8261949 - L1ME4a LINE L1 -253 5868 5494 1121 122 2 3 chr11 142521758 142522347 -8261206 + L1MA6 LINE L1 5558 6288 -12 25 31 0 0 chr11 142522355 142522387 -8261166 + AT_rich Low_complexity Low_complexity 1 32 0 2490 235 54 30 chr11 142522391 142523501 -8260052 - L1ME2 LINE L1 -9 6224 5027 * 6298 107 29 12 chr11 142523471 142524555 -8258998 - L1MA1 LINE L1 0 6371 5270 1626 273 71 55 chr11 142524541 142524755 -8258798 - L1ME2 LINE L1 -4985 1220 1011 * 2324 109 3 0 chr11 142524755 142525059 -8258494 - AluSp SINE Alu -8 305 1 1626 273 71 55 chr11 142525059 142525982 -8257571 - L1ME2 LINE L1 -5194 1011 92 372 350 17 0 chr11 142527055 142527175 -8256378 + MER5B DNA MER1_type 56 177 -1 1886 115 36 0 chr11 142527812 142528065 -8255488 + AluSx SINE Alu 35 296 -16 4709 179 25 8 chr11 142528421 142528685 -8254868 + L1 LINE L1 3623 3881 -2265 2098 124 28 0 chr11 142528685 142528975 -8254578 + AluSx SINE Alu 1 298 -14 4709 179 25 8 chr11 142528975 142529746 -8253807 + L1 LINE L1 3881 4676 -1470 317 103 52 0 chr11 142529747 142529805 -8253748 + L1MB3 LINE L1 6121 6181 -2 627 210 27 73 chr11 142529805 142530024 -8253529 - MER115 DNA AcHobo -74 619 411 279 54 0 0 chr11 142530024 142530061 -8253492 + (TTAGGG)n Simple_repeat Simple_repeat 3 39 0 1103 216 144 78 chr11 142530095 142530684 -8252869 + MER76 LTR ERV 1 628 -60 280 233 204 0 chr11 142530962 142531065 -8252488 - MIR SINE MIR -71 191 68 660 307 58 99 chr11 142533734 142534287 -8249266 + L1ME4a LINE L1 47 576 -5543 236 222 153 14 chr11 142534386 142534458 -8249095 - L2 LINE L2 -257 3056 2975 232 65 0 0 chr11 142534464 142534495 -8249058 + U2 snRNA snRNA 1 31 -157 267 191 0 36 chr11 142535771 142535855 -8247698 + L1ME4a LINE L1 2861 2941 -3188 238 178 0 0 chr11 142535854 142535899 -8247654 + L1ME4a LINE L1 5623 5667 -437 * 382 353 42 33 chr11 142535937 142536178 -8247375 + L1ME4a LINE L1 5660 5902 -202 355 175 0 19 chr11 142537166 142537269 -8246284 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 231 276 0 0 chr11 142537463 142537521 -8246032 - MIR SINE MIR -64 144 87 410 319 22 10 chr11 142537600 142537779 -8245774 - MIR SINE MIR -67 141 15 255 61 0 0 chr11 142537887 142537920 -8245633 + (CA)n Simple_repeat Simple_repeat 1 33 0 25 31 0 0 chr11 142538629 142538661 -8244892 + AT_rich Low_complexity Low_complexity 1 32 0 465 352 47 5 chr11 142538757 142538950 -8244603 + MIR3 SINE MIR 2 202 -6 266 280 122 13 chr11 142540598 142540791 -8242762 - MIR SINE MIR -6 256 5 287 346 33 26 chr11 142542196 142542349 -8241204 + MER5B DNA MER1_type 1 154 -24 213 281 12 61 chr11 142542372 142542454 -8241099 - MIR SINE MIR -106 156 79 282 361 49 28 chr11 142542632 142542959 -8240594 + L1ME2 LINE L1 100 433 -5963 1490 283 64 49 chr11 142543189 142544451 -8239102 + L1ME2 LINE L1 662 1942 -4454 22 0 0 0 chr11 142544535 142544557 -8238996 + AT_rich Low_complexity Low_complexity 1 22 0 1032 247 28 25 chr11 142544565 142544889 -8238664 + L1ME2 LINE L1 3882 4206 -2009 892 127 0 39 chr11 142544938 142545190 -8238363 + AluJb SINE Alu 1 312 0 207 0 0 0 chr11 142545330 142545353 -8238200 + (A)n Simple_repeat Simple_repeat 1 23 0 2822 243 46 23 chr11 142545563 142546617 -8236936 + L1ME2 LINE L1 4248 5348 -885 1614 125 3 66 chr11 142546617 142546904 -8236649 + AluSx SINE Alu 44 312 0 2822 243 46 23 chr11 142546904 142547504 -8236049 + L1ME2 LINE L1 5348 5933 -300 834 239 138 18 chr11 142547632 142547908 -8235645 - L2 LINE L2 0 3313 3005 282 29 0 0 chr11 142549082 142549117 -8234436 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7646 28 0 0 chr11 142549117 142550577 -8232976 - L1PA3 LINE L1 -6 6149 4690 13544 43 32 0 chr11 142550577 142552266 -8231287 + L1P LINE L1 3042 4794 -1352 3100 61 0 2 chr11 142552266 142552662 -8230891 - L1PA8 LINE L1 -1 6171 5777 13544 43 32 0 chr11 142552662 142552782 -8230771 + L1P LINE L1 4794 4909 -1237 629 230 77 43 chr11 142552934 142552949 -8230604 + MIR SINE MIR 1 14 -248 445 266 47 0 chr11 142552949 142553077 -8230476 - MER94 DNA DNA 0 134 1 629 230 77 43 chr11 142553077 142553270 -8230283 + MIR SINE MIR 14 216 -46 216 237 41 82 chr11 142553342 142553439 -8230114 - L2 LINE L2 -626 2688 2596 458 320 46 11 chr11 142553884 142554059 -8229494 + MIR SINE MIR 4 184 -78 2080 144 0 0 chr11 142554835 142555126 -8228427 + AluSx SINE Alu 2 292 -20 235 314 57 9 chr11 142555408 142555513 -8228040 - L3b LINE CR1 -120 1463 1354 199 305 46 46 chr11 142555554 142555685 -8227868 + MIR SINE MIR 66 196 -66 535 300 135 56 chr11 142555690 142556108 -8227445 + L2 LINE L2 1909 2374 -940 1772 102 144 18 chr11 142556108 142556441 -8227112 - THE1C LTR MaLR 0 375 1 535 300 135 56 chr11 142556441 142556519 -8227034 + L2 LINE L2 2374 2444 -870 26 50 0 0 chr11 142556555 142556595 -8226958 + AT_rich Low_complexity Low_complexity 1 40 0 1349 222 0 8 chr11 142556616 142556864 -8226689 - AluJo SINE Alu -55 257 12 853 149 0 15 chr11 142556875 142557009 -8226544 - FLAM_C SINE Alu -1 132 1 438 262 113 15 chr11 142557190 142557599 -8225954 - L1ME4a LINE L1 -49 6072 5624 2332 169 48 2 chr11 142557668 142558107 -8225446 + LTR42 LTR ERVL 1 459 -36 6199 26 1 0 chr11 142558110 142558867 -8224686 - L1PA3 LINE L1 -8 6147 5390 273 273 109 45 chr11 142558918 142559105 -8224448 - L1ME4a LINE L1 -579 5542 5347 1820 216 19 25 chr11 142559169 142559646 -8223907 - L1ME2 LINE L1 -117 6047 5574 688 156 8 79 chr11 142559646 142559816 -8223737 - MSTB2 LTR MaLR 0 457 273 472 216 6 105 chr11 142559807 142559969 -8223584 - MSTB2 LTR MaLR -297 160 15 * 1142 209 40 26 chr11 142559971 142560386 -8223167 - L1ME2 LINE L1 -585 5579 5160 22 35 0 0 chr11 142560664 142560693 -8222860 + AT_rich Low_complexity Low_complexity 1 29 0 243 230 58 0 chr11 142561105 142561192 -8222361 + HAL1b LINE L1 260 351 -997 1070 195 9 129 chr11 142561236 142561389 -8222164 + L1MC5 LINE L1 6641 6811 -1150 3199 126 45 4 chr11 142561389 142561880 -8221673 - MER9 LTR ERVK 0 511 1 1070 195 9 129 chr11 142561880 142562167 -8221386 + L1MC5 LINE L1 6811 7028 -933 1219 201 30 17 chr11 142562171 142562469 -8221084 + L1MD2 LINE L1 6056 6357 -2 287 319 25 8 chr11 142562816 142562935 -8220618 + (ATGGTG)n Simple_repeat Simple_repeat 6 126 0 1543 240 0 3 chr11 142563516 142563828 -8219725 + AluJo SINE Alu 1 311 -1 1897 140 39 3 chr11 142564164 142564500 -8219053 - MER46B DNA MER2_type -13 223 1 245 245 152 13 chr11 142564758 142564909 -8218644 + L1ME4a LINE L1 5939 6110 -11 32 26 0 0 chr11 142564956 142564995 -8218558 + AT_rich Low_complexity Low_complexity 1 39 0 458 300 8 0 chr11 142565029 142565149 -8218404 + MIR3 SINE MIR 10 130 -78 262 259 86 12 chr11 142565314 142565413 -8218140 + MIR SINE MIR 49 132 -76 22 0 0 0 chr11 142565705 142565727 -8217826 + AT_rich Low_complexity Low_complexity 1 22 0 594 248 8 0 chr11 142565761 142565882 -8217671 + MER5B DNA MER1_type 57 178 0 951 210 11 0 chr11 142566252 142566438 -8217115 - MER5A DNA MER1_type -1 188 1 328 102 114 0 chr11 142567772 142567860 -8215693 + CT-rich Low_complexity Low_complexity 3 100 0 2322 105 7 0 chr11 142568057 142568363 -8215190 - AluSx SINE Alu -4 308 1 343 268 113 46 chr11 142568489 142568683 -8214870 - MIR SINE MIR 0 262 56 365 303 55 47 chr11 142568893 142569257 -8214296 + L1ME3A LINE L1 5261 5642 -524 308 377 53 25 chr11 142569295 142569539 -8214014 + L1ME3A LINE L1 5682 5932 -238 6219 218 12 40 chr11 142569679 142571564 -8211989 + L1M4 LINE L1 2713 4543 -1603 2216 118 13 8 chr11 142571564 142571937 -8211616 + L1MC1 LINE L1 5712 6086 -247 1638 161 0 0 chr11 142571966 142572233 -8211320 + L1MC1 LINE L1 6062 6328 -5 1322 274 96 44 chr11 142572405 142572945 -8210608 - MER115 DNA AcHobo -64 629 62 1987 116 7 0 chr11 142572971 142573273 -8210280 - AluSg1 SINE Alu 0 304 1 1996 174 17 2 chr11 142573502 142573950 -8209603 - MER89 LTR ERV1 -4 555 2 27 0 0 0 chr11 142575086 142575113 -8208440 + AT_rich Low_complexity Low_complexity 1 27 0 793 263 16 0 chr11 142575202 142575388 -8208165 - MER5A DNA MER1_type 0 189 1 306 291 134 6 chr11 142575449 142575621 -8207932 - HAL1 LINE L1 -1821 686 493 2640 132 18 11 chr11 142575646 142576094 -8207459 - Tigger2 DNA MER2_type 0 2718 2268 349 217 0 0 chr11 142576079 142576148 -8207405 - Tigger2 DNA MER2_type -2649 69 1 * 214 320 39 39 chr11 142576148 142576276 -8207277 - MIR SINE MIR -114 148 21 21 0 0 0 chr11 142576522 142576543 -8207010 + AT_rich Low_complexity Low_complexity 1 21 0 2498 87 0 0 chr11 142577154 142577487 -8206066 + AluSg1 SINE Alu 1 333 0 198 0 0 0 chr11 142577615 142577637 -8205916 + (C)n Simple_repeat Simple_repeat 1 22 0 465 19 0 0 chr11 142577662 142577716 -8205837 + (A)n Simple_repeat Simple_repeat 1 54 0 182 248 28 85 chr11 142577821 142577962 -8205591 - L2 LINE L2 -90 3223 3091 437 295 53 120 chr11 142578031 142578390 -8205163 + L1MEd LINE L1 242 576 -5543 200 274 152 49 chr11 142578399 142578563 -8204990 - L2 LINE L2 -158 3155 2975 2120 149 24 53 chr11 142578786 142579242 -8204311 + MSTB2 LTR MaLR 15 457 0 274 282 27 18 chr11 142579412 142579522 -8204031 + LTR67 LTR ERVL 435 545 -12 279 175 0 0 chr11 142579754 142579811 -8203742 + A-rich Low_complexity Low_complexity 1 57 0 303 331 25 25 chr11 142580428 142580549 -8203004 - L2 LINE L2 -255 3017 2897 318 298 48 0 chr11 142580628 142580642 -8202911 + Ricksha DNA DNA 229 337 -1709 361 233 56 0 chr11 142580642 142580732 -8202821 + ERVL-C2 LTR ERVL 5654 5748 -16 1876 208 24 7 chr11 142580740 142581158 -8202395 + MLT2C2 LTR ERVL 1 425 -39 254 59 0 0 chr11 142581221 142581255 -8202298 + MLT2C1 LTR ERVL 364 397 0 22 0 0 0 chr11 142582397 142582419 -8201134 + AT_rich Low_complexity Low_complexity 1 22 0 240 183 0 33 chr11 142582837 142582897 -8200656 + (TA)n Simple_repeat Simple_repeat 2 59 0 1002 97 0 0 chr11 142582996 142583140 -8200413 + (TA)n Simple_repeat Simple_repeat 2 145 0 806 141 22 30 chr11 142583506 142583641 -8199912 + AluJo SINE Alu 1 134 -178 5695 132 16 23 chr11 142583777 142584925 -8198628 + L1PB1 LINE L1 4641 5778 -373 279 0 0 0 chr11 142584925 142584956 -8198597 + (TG)n Simple_repeat Simple_repeat 2 32 0 5695 132 16 23 chr11 142584956 142585328 -8198225 + L1PB1 LINE L1 5778 6151 0 404 261 99 19 chr11 142585503 142585800 -8197753 + L1MC5 LINE L1 4027 4349 -1797 237 33 0 0 chr11 142586045 142586075 -8197478 + (T)n Simple_repeat Simple_repeat 1 30 0 1708 173 24 7 chr11 142586255 142586550 -8197003 - AluJo SINE Alu -12 300 1 437 277 122 5 chr11 142586802 142587015 -8196538 - L1ME LINE L1 -559 5603 5366 385 296 43 48 chr11 142587089 142587460 -8196093 - L1ME LINE L1 -877 5269 4901 2244 105 10 0 chr11 142587462 142587758 -8195795 + AluSp SINE Alu 1 299 -14 637 125 143 0 chr11 142589190 142589302 -8194251 + FLAM_A SINE Alu 1 128 -5 865 162 7 0 chr11 142591097 142591233 -8192320 + FAM SINE Alu 1 137 -48 999 194 5 5 chr11 142591651 142591847 -8191706 + L1PA15 LINE L1 5970 6165 0 243 374 40 0 chr11 142592200 142592299 -8191254 - L3 LINE CR1 -40 1537 1435 413 309 77 62 chr11 142592374 142592714 -8190839 + L1MC5 LINE L1 4942 5286 -860 1332 219 184 41 chr11 142592736 142593270 -8190283 + L1MC5 LINE L1 5307 5916 -1892 722 148 0 59 chr11 142593271 142593406 -8190147 - FLAM_C SINE Alu -6 127 1 354 23 0 0 chr11 142593450 142593493 -8190060 + (TG)n Simple_repeat Simple_repeat 2 44 0 1350 165 24 76 chr11 142593509 142593800 -8189753 - AluJb SINE Alu -36 276 1 22 0 0 0 chr11 142593929 142593951 -8189602 + AT_rich Low_complexity Low_complexity 1 22 0 1068 69 0 0 chr11 142593955 142594085 -8189468 + AluSg/x SINE Alu 168 297 -15 2772 238 55 67 chr11 142594111 142595845 -8187708 + L1MC5 LINE L1 6215 7931 -30 67 60 0 0 chr11 142596507 142596623 -8186930 + AT_rich Low_complexity Low_complexity 1 116 0 210 308 77 0 chr11 142596761 142596826 -8186727 + L2 LINE L2 3244 3313 0 956 199 15 0 chr11 142596996 142597192 -8186361 + MER105 DNA DNA 5 203 -1 261 220 0 0 chr11 142597196 142597246 -8186307 + MER5A DNA MER1_type 26 75 -114 5071 194 25 19 chr11 142597246 142598880 -8184673 + L1PB4 LINE L1 1664 3305 -3543 1088 96 55 11 chr11 142598880 142599192 -8184361 + THE1C LTR MaLR 1 375 0 2018 126 35 0 chr11 142599196 142599482 -8184071 - AluSx SINE Alu -16 296 1 10511 108 45 9 chr11 142599489 142601011 -8182542 + THE1C-int LTR MaLR 1 1576 -4 1200 127 47 11 chr11 142601015 142601334 -8182219 + THE1C LTR MaLR 1 375 0 13571 175 18 26 chr11 142601336 142602962 -8180591 + L1PB4 LINE L1 3303 4940 -2065 1479 224 4 0 chr11 142602962 142603243 -8180310 - AluJo SINE Alu -30 282 1 13571 175 18 26 chr11 142603243 142603768 -8179785 + L1PB4 LINE L1 4940 5467 -1538 547 114 0 0 chr11 142603768 142603847 -8179706 + MADE1 DNA Mariner 2 80 0 13571 175 18 26 chr11 142603847 142604435 -8179118 + L1PB4 LINE L1 5467 6058 -947 1715 134 106 3 chr11 142604435 142604718 -8178835 + AluJb SINE Alu 1 312 0 13571 175 18 26 chr11 142604718 142605566 -8177987 + L1PB4 LINE L1 6058 7005 0 2549 64 0 0 chr11 142607229 142607527 -8176026 + AluY SINE Alu 1 298 -13 682 191 76 8 chr11 142607559 142607690 -8175863 - MER63 DNA MER1_type -70 766 1 328 283 40 67 chr11 142608178 142608475 -8175078 + L1MC4a LINE L1 5706 5994 -1814 240 203 14 54 chr11 142608602 142608676 -8174877 + L1ME3 LINE L1 6084 6154 -8 405 302 118 24 chr11 142609629 142609841 -8173712 - L3 LINE CR1 -1 1576 1345 1727 82 5 0 chr11 142609841 142610061 -8173492 + AluSg/x SINE Alu 86 306 -6 199 194 0 0 chr11 142610212 142610248 -8173305 - L3 LINE CR1 -256 1321 1286 195 42 0 0 chr11 142611408 142611432 -8172121 + (CA)n Simple_repeat Simple_repeat 1 24 0 1938 210 74 18 chr11 142611540 142612096 -8171457 + L2 LINE L2 2040 2626 -688 227 289 93 31 chr11 142612118 142612215 -8171338 - MLT1E2 LTR MaLR -12 614 512 1954 184 22 30 chr11 142613444 142613808 -8169745 - MLT2B3 LTR ERVL 0 554 194 977 138 191 5 chr11 142613915 142614104 -8169449 - MLT2B2 LTR ERVL -291 224 1 1154 225 137 6 chr11 142614104 142614636 -8168917 + L2 LINE L2 2648 3257 -56 297 337 54 43 chr11 142614717 142614901 -8168652 - MLT1K LTR MaLR -342 246 61 295 108 0 0 chr11 142615181 142615218 -8168335 + tRNA-Tyr-TAC tRNA tRNA 1 37 -39 195 42 0 0 chr11 142615263 142615287 -8168266 + (GA)n Simple_repeat Simple_repeat 1 24 0 5271 117 50 3 chr11 142615704 142616555 -8166998 - L1PA16 LINE L1 -9 6157 5278 1752 144 77 18 chr11 142616555 142616840 -8166713 - AluJb SINE Alu -10 302 1 380 241 0 9 chr11 142616840 142616931 -8166622 - L1 LINE L1 -1652 4494 4403 2311 103 0 3 chr11 142617263 142617573 -8165980 + AluSc SINE Alu 1 309 0 866 99 8 0 chr11 142617951 142618082 -8165471 + L1P LINE L1 4970 5101 -1045 627 306 150 28 chr11 142618377 142618704 -8164849 + LTR16A LTR ERVL 90 449 -1 1499 167 35 91 chr11 142618883 142619279 -8164274 + MLT1A2 LTR MaLR 1 374 0 5717 29 0 6 chr11 142619477 142620134 -8163419 + SVA Other Other 762 1414 0 998 200 0 41 chr11 142620420 142620615 -8162938 + MER20 DNA MER1_type 2 188 -31 1293 142 9 19 chr11 142620631 142620863 -8162690 + AluJb SINE Alu 77 306 0 451 251 6 38 chr11 142620957 142621140 -8162413 + L1MB7 LINE L1 5094 5270 -876 623 262 82 11 chr11 142621402 142621460 -8162093 + L1MB7 LINE L1 5273 5325 -841 1711 169 10 17 chr11 142621460 142621761 -8161792 + AluJo SINE Alu 1 299 -13 623 262 82 11 chr11 142621761 142621969 -8161584 + L1MB7 LINE L1 5325 5558 -608 793 169 0 0 chr11 142622104 142622234 -8161319 + FLAM_C SINE Alu 1 130 -3 985 222 208 12 chr11 142622500 142623075 -8160478 + LTR50 LTR ERVL 3 792 -3 2076 253 136 95 chr11 142623126 142623425 -8160128 + HAL1 LINE L1 1 287 -2220 2108 108 0 10 chr11 142623425 142623713 -8159840 + AluSx SINE Alu 28 312 0 2076 253 136 95 chr11 142623713 142624440 -8159113 + HAL1 LINE L1 287 983 -1524 2634 175 24 32 chr11 142624440 142625034 -8158519 + L1MB7 LINE L1 5577 6165 -19 2076 253 136 95 chr11 142625034 142625060 -8158493 + HAL1 LINE L1 983 1006 -1501 1873 150 34 7 chr11 142625060 142625353 -8158200 + AluSx SINE Alu 1 301 -11 2076 253 136 95 chr11 142625353 142625767 -8157786 + HAL1 LINE L1 1006 1528 -979 1015 134 15 145 chr11 142625797 142625851 -8157702 - L1MB8 LINE L1 -14 6164 6105 1598 117 120 7 chr11 142625851 142626125 -8157428 + AluSg SINE Alu 1 305 -5 2312 53 0 14 chr11 142626127 142626408 -8157145 + AluY SINE Alu 1 277 -34 510 17 0 0 chr11 142626411 142626470 -8157083 + (TAAAA)n Simple_repeat Simple_repeat 3 61 0 1015 134 15 145 chr11 142626470 142626677 -8156876 - L1MB8 LINE L1 -76 6102 5931 3423 156 32 32 chr11 142626677 142626827 -8156726 - L1MA8 LINE L1 -5 6286 6137 2079 149 0 13 chr11 142626827 142627143 -8156410 - AluSx SINE Alu 0 312 1 3423 156 32 32 chr11 142627143 142627236 -8156317 - L1MA8 LINE L1 -154 6137 6045 3939 121 5 26 chr11 142627236 142627848 -8155705 - MER7C DNA MER2_type 0 602 4 3423 156 32 32 chr11 142627848 142628107 -8155446 - L1MA8 LINE L1 -246 6045 5780 2286 104 0 3 chr11 142628107 142628405 -8155148 - AluY SINE Alu -14 297 1 3423 156 32 32 chr11 142628405 142628560 -8154993 - L1MA8 LINE L1 -510 5781 5627 483 190 30 0 chr11 142628561 142628661 -8154892 + HAL1 LINE L1 1549 1651 -856 1058 216 163 26 chr11 142628666 142628972 -8154581 + LTR33 LTR ERVL 6 353 -168 590 300 177 24 chr11 142629051 142629515 -8154038 - MLT1H LTR MaLR -13 536 2 241 232 0 14 chr11 142629515 142629582 -8153971 + LTR33 LTR ERVL 424 489 -32 765 306 91 63 chr11 142630196 142630842 -8152711 + ERVL LTR ERVL 534 1197 -3799 411 297 162 11 chr11 142630920 142631105 -8152448 + ERVL LTR ERVL 1961 2173 -3481 605 82 10 21 chr11 142631107 142631204 -8152349 + AluY SINE Alu 215 310 -1 825 250 92 79 chr11 142631204 142631725 -8151828 + ERVL LTR ERVL 2156 2740 -2914 864 275 56 50 chr11 142631731 142631814 -8151739 + ERVL LTR ERVL 2875 2956 -2808 2349 99 3 6 chr11 142631814 142632127 -8151426 + AluSx SINE Alu 1 312 0 864 275 56 50 chr11 142632127 142632345 -8151208 + ERVL LTR ERVL 2956 3178 -2586 261 83 0 0 chr11 142634708 142634744 -8148809 + (TG)n Simple_repeat Simple_repeat 1 36 0 236 100 25 0 chr11 142634744 142634784 -8148769 + (GA)n Simple_repeat Simple_repeat 2 42 0 202 227 242 0 chr11 142635263 142635329 -8148224 - L2 LINE L2 -7 3306 3225 207 204 45 0 chr11 142635523 142635567 -8147986 - L2 LINE L2 -12 3301 3256 342 316 103 0 chr11 142635581 142635717 -8147836 - MIR SINE MIR -93 169 20 208 292 79 0 chr11 142636135 142636224 -8147329 + MIR SINE MIR 35 130 -78 343 248 43 17 chr11 142636586 142636703 -8146850 + MIR3 SINE MIR 48 167 -41 212 254 16 71 chr11 142637814 142637868 -8145685 + L2 LINE L2 3133 3188 -84 1869 164 3 7 chr11 142637868 142638160 -8145393 - AluJo SINE Alu -21 291 1 212 254 16 71 chr11 142638160 142638231 -8145322 + L2 LINE L2 3188 3251 -21 199 254 0 63 chr11 142638528 142638591 -8144962 - L2 LINE L2 -307 2965 2907 382 242 133 121 chr11 142639097 142639427 -8144126 + MLT1J LTR MaLR 1 334 -177 585 278 58 24 chr11 142640615 142640906 -8142647 - L3b LINE CR1 -178 1405 1105 412 141 0 0 chr11 142641328 142641392 -8142161 - L2 LINE L2 -2 3311 3248 2073 94 7 7 chr11 142641411 142641688 -8141865 + AluSx SINE Alu 1 277 -35 330 237 29 93 chr11 142642115 142642254 -8141299 + MLT1K LTR MaLR 354 483 -105 384 262 19 124 chr11 142642467 142642677 -8140876 + MIR SINE MIR 14 201 -61 343 338 50 51 chr11 142642713 142643205 -8140348 + MLT1K LTR MaLR 57 588 0 180 193 0 70 chr11 142643207 142643264 -8140289 + MIR SINE MIR 200 252 -10 1962 158 7 0 chr11 142643341 142643644 -8139909 - AluJo SINE Alu -7 305 1 1986 125 3 55 chr11 142644739 142645051 -8138502 - AluSx SINE Alu -16 296 1 204 22 156 0 chr11 142645093 142645138 -8138415 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 227 346 103 22 chr11 142645226 142645411 -8138142 - MLT1L LTR MaLR -224 391 192 295 244 0 49 chr11 142645453 142645535 -8138018 - MLT1L LTR MaLR -535 80 3 1939 136 30 3 chr11 142645687 142645982 -8137571 + AluSx SINE Alu 1 303 -9 289 263 88 0 chr11 142647644 142647724 -8135829 - L2 LINE L2 0 3313 3227 2008 145 16 10 chr11 142647743 142648053 -8135500 - AluJb SINE Alu 0 312 1 1402 170 4 26 chr11 142648064 142648334 -8135219 - L1MA9 LINE L1 0 6312 6049 392 216 206 10 chr11 142648385 142648579 -8134974 + L1MC5 LINE L1 7694 7925 -36 3644 98 20 104 chr11 142649619 142650282 -8133271 + MER4B LTR ERV1 2 608 -2 417 240 41 68 chr11 142650503 142650649 -8132904 + MIR3 SINE MIR 13 154 -54 2128 136 19 7 chr11 142650666 142650974 -8132579 + AluSx SINE Alu 1 312 0 216 203 0 17 chr11 142652402 142652461 -8131092 + (TG)n Simple_repeat Simple_repeat 2 59 0 188 86 29 0 chr11 142654657 142654692 -8128861 + (TA)n Simple_repeat Simple_repeat 2 37 0 26 0 0 0 chr11 142654706 142654732 -8128821 + AT_rich Low_complexity Low_complexity 1 26 0 446 324 137 35 chr11 142654765 142655319 -8128234 + L1MC4a LINE L1 4626 5250 -896 355 299 113 13 chr11 142655359 142655590 -8127963 + L1MC4a LINE L1 5352 5605 -2203 1935 126 18 0 chr11 142655590 142655876 -8127677 + AluSx SINE Alu 1 291 -21 444 180 31 137 chr11 142655903 142656064 -8127489 + MIR SINE MIR 72 215 -47 254 372 0 12 chr11 142656064 142656150 -8127403 + L2 LINE L2 3229 3313 0 562 271 39 76 chr11 142656192 142656481 -8127072 + L1MC4a LINE L1 5614 5912 -1896 729 181 0 9 chr11 142656481 142656597 -8126956 - FLAM_A SINE Alu -18 115 1 562 271 39 76 chr11 142656597 142656627 -8126926 + L1MC4a LINE L1 5912 5942 -1866 1654 166 0 17 chr11 142656627 142656916 -8126637 + AluJb SINE Alu 5 288 -24 562 271 39 76 chr11 142656916 142657004 -8126549 + L1MC4a LINE L1 5942 6007 -1801 1726 201 72 21 chr11 142657235 142657669 -8125884 + MLT1C LTR MaLR 6 382 -8 333 0 0 0 chr11 142658230 142658267 -8125286 + (CA)n Simple_repeat Simple_repeat 2 38 0 183 42 0 0 chr11 142658612 142658636 -8124917 + (CA)n Simple_repeat Simple_repeat 2 25 0 273 98 0 0 chr11 142658862 142658903 -8124650 + (CA)n Simple_repeat Simple_repeat 1 41 0 259 246 62 0 chr11 142660275 142660340 -8123213 - MIR3 SINE MIR -43 165 97 214 128 51 0 chr11 142660674 142660713 -8122840 + C-rich Low_complexity Low_complexity 1 41 0 523 256 144 22 chr11 142664327 142664507 -8119046 - MIR SINE MIR -48 214 13 404 294 113 6 chr11 142665672 142665832 -8117721 - MIR SINE MIR -73 189 13 384 243 97 7 chr11 142665842 142665986 -8117567 - L1ME4a LINE L1 -4 6117 5961 415 245 265 20 chr11 142667110 142667257 -8116296 + MIR SINE MIR 56 238 -24 221 241 0 37 chr11 142667314 142667368 -8116185 - MIR SINE MIR -64 144 93 422 145 53 0 chr11 142668640 142668716 -8114837 + MER116 DNA Mariner 1 80 0 519 301 87 16 chr11 142668735 142668918 -8114635 - MIR SINE MIR -1 261 66 350 329 81 17 chr11 142668960 142669194 -8114359 + MIR SINE MIR 12 260 -2 203 86 0 29 chr11 142669252 142669287 -8114266 + (TTTTC)n Simple_repeat Simple_repeat 4 37 0 2336 70 0 19 chr11 142670124 142670438 -8113115 - AluY SINE Alu -3 308 1 1521 153 96 0 chr11 142671125 142671406 -8112147 - AluSx SINE Alu -4 308 1 1041 155 0 36 chr11 142671724 142671918 -8111635 + AluSx SINE Alu 5 191 -121 323 185 6 108 chr11 142671918 142672075 -8111478 + AluSg SINE Alu 57 197 -103 1118 132 0 11 chr11 142672128 142672302 -8111251 + AluSg/x SINE Alu 121 292 -20 1531 187 44 3 chr11 142672323 142672617 -8110936 + AluJo SINE Alu 7 312 0 375 220 143 11 chr11 142673226 142673317 -8110236 - L2 LINE L2 -2 3311 3209 824 143 189 0 chr11 142674670 142674845 -8108708 - MER3 DNA MER1_type -1 208 1 24 0 0 0 chr11 142676381 142676405 -8107148 + AT_rich Low_complexity Low_complexity 1 24 0 1641 142 0 62 chr11 142676796 142677120 -8106433 - AluJo SINE Alu -8 304 1 234 0 0 0 chr11 142679492 142679518 -8104035 + (T)n Simple_repeat Simple_repeat 1 26 0 552 165 21 0 chr11 142683781 142683878 -8099675 + AluS SINE Alu 2 100 -213 240 35 0 0 chr11 142683978 142684007 -8099546 + (A)n Simple_repeat Simple_repeat 1 29 0 2168 77 7 0 chr11 142687543 142687830 -8095723 - AluSp SINE Alu -24 289 1 454 322 55 58 chr11 142690051 142690448 -8093105 + L3 LINE CR1 786 1181 -396 2278 93 0 0 chr11 142692132 142692434 -8091119 + AluSq SINE Alu 1 302 -11 219 313 37 49 chr11 142692806 142692884 -8090669 + L2 LINE L2 1825 1902 -1412 2382 77 0 0 chr11 142692884 142693184 -8090369 - AluSx SINE Alu -12 300 1 219 313 37 49 chr11 142693184 142693268 -8090285 + L2 LINE L2 1902 1985 -1329 1587 153 7 23 chr11 142693406 142693707 -8089846 + AluJo SINE Alu 10 305 -7 359 250 12 0 chr11 142693711 142693795 -8089758 - MIR3 SINE MIR -13 195 111 435 242 40 32 chr11 142693877 142694001 -8089552 + L2 LINE L2 3187 3311 -2 2003 139 3 0 chr11 142694570 142694879 -8088674 + AluSx SINE Alu 1 310 -2 214 313 25 25 chr11 142696473 142696553 -8087000 - MIR SINE MIR 0 262 183 994 297 65 20 chr11 142696573 142696970 -8086583 - LTR16A LTR ERVL -15 435 21 207 158 26 13 chr11 142696974 142697050 -8086503 + (TA)n Simple_repeat Simple_repeat 2 78 0 242 221 15 88 chr11 142697055 142697123 -8086430 - MIR SINE MIR -115 147 85 923 167 22 22 chr11 142697321 142697501 -8086052 - FAM SINE Alu -1 48 1 192 294 147 37 chr11 142697680 142697789 -8085764 - L3b LINE CR1 -142 1441 1321 635 227 173 27 chr11 142698140 142698365 -8085188 + MIR SINE MIR 5 262 0 1483 113 0 18 chr11 142698616 142698837 -8084716 - AluSg/x SINE Alu -17 295 79 1462 139 54 12 chr11 142699073 142699332 -8084221 + AluJb SINE Alu 29 298 -14 249 340 10 19 chr11 142699856 142699959 -8083594 + L2 LINE L2 3169 3270 -2 21 0 0 0 chr11 142700168 142700189 -8083364 + AT_rich Low_complexity Low_complexity 1 21 0 598 226 30 8 chr11 142700192 142700325 -8083228 + L2 LINE L2 3178 3313 0 370 359 185 4 chr11 142701777 142702047 -8081506 + L2 LINE L2 2557 2875 -439 328 221 15 15 chr11 142702224 142702292 -8081261 - MER112 DNA MER1_type -18 242 175 302 214 95 0 chr11 142703161 142703245 -8080308 + MIR SINE MIR 166 257 -5 410 171 19 57 chr11 142703245 142703350 -8080203 - MER112 DNA MER1_type -143 117 17 334 190 51 13 chr11 142704284 142704363 -8079190 + Charlie2a DNA MER1_type 323 404 -2378 514 247 238 0 chr11 142704389 142704612 -8078941 + Charlie2a DNA MER1_type 727 1002 -1860 406 188 50 0 chr11 142704627 142704728 -8078825 + Charlie2a DNA MER1_type 2753 2858 -4 1039 192 56 0 chr11 142704741 142704939 -8078614 - MER3 DNA MER1_type 0 209 1 873 185 24 34 chr11 142705194 142705399 -8078154 - MER3 DNA MER1_type -5 204 2 1837 167 3 3 chr11 142706101 142706413 -8077140 - AluJb SINE Alu 0 312 1 213 39 0 0 chr11 142706910 142706936 -8076617 + (TTTTTA)n Simple_repeat Simple_repeat 1 26 0 188 276 52 0 chr11 142706958 142707016 -8076537 + L2 LINE L2 3248 3308 -5 1088 155 0 17 chr11 142707671 142707845 -8075708 - FAM SINE Alu -4 171 1 1835 158 0 49 chr11 142708437 142708765 -8074788 + AluJo SINE Alu 1 312 0 212 222 99 25 chr11 142708776 142708857 -8074696 - L2 LINE L2 -54 3259 3173 999 147 88 34 chr11 142709354 142709558 -8073995 + AluJo SINE Alu 1 215 -97 31 0 0 0 chr11 142709591 142709622 -8073931 + AT_rich Low_complexity Low_complexity 1 31 0 2257 76 7 3 chr11 142710847 142711135 -8072418 + AluSp SINE Alu 1 289 -24 1192 102 36 41 chr11 142712411 142712607 -8070946 - L1PB1 LINE L1 0 6151 5957 741 217 179 19 chr11 142712836 142713043 -8070510 + MIR SINE MIR 2 241 -21 333 0 0 0 chr11 142713199 142713236 -8070317 + (TG)n Simple_repeat Simple_repeat 1 37 0 2039 114 11 4 chr11 142713237 142713517 -8070036 - AluJb SINE Alu -30 282 1 2884 176 0 0 chr11 142713606 142714066 -8069487 - MER52A LTR ERV1 0 1755 1296 862 107 0 0 chr11 142714066 142714188 -8069365 + AluSp/q SINE Alu 185 306 -7 958 252 65 67 chr11 142714192 142714672 -8068881 - L1M4 LINE L1 -1296 4850 4372 1185 160 5 0 chr11 142714676 142714863 -8068690 - AluJb SINE Alu -5 307 120 1161 150 24 58 chr11 142714979 142715186 -8068367 + AluJb SINE Alu 100 299 -13 1009 268 88 54 chr11 142715238 142715775 -8067778 + MLT1H1 LTR MaLR 1 555 0 494 315 169 11 chr11 142715843 142716192 -8067361 + L2 LINE L2 2870 3273 -40 2022 268 22 2 chr11 142716203 142716737 -8066816 + L1MEc LINE L1 47 591 -5805 8473 97 51 27 chr11 142716737 142717473 -8066080 + Charlie3 DNA MER1_type 1 781 -1925 1964 135 0 32 chr11 142717473 142717784 -8065769 + AluSx SINE Alu 1 301 -11 8473 97 51 27 chr11 142717784 142718279 -8065274 + Charlie3 DNA MER1_type 781 1262 -1444 1225 191 33 29 chr11 142718293 142718565 -8064988 + L1ME1 LINE L1 4821 5093 -1053 3078 212 50 55 chr11 142719147 142720242 -8063311 + L1ME1 LINE L1 5080 6161 -5 2225 119 3 3 chr11 142720430 142720732 -8062821 + AluSx SINE Alu 1 302 -10 1653 152 76 4 chr11 142720965 142721241 -8062312 + AluSx SINE Alu 1 296 -16 762 318 29 6 chr11 142721275 142721586 -8061967 + L1ME4a LINE L1 5508 5825 -296 360 0 0 0 chr11 142721698 142721738 -8061815 + (TAA)n Simple_repeat Simple_repeat 2 41 0 2287 79 0 14 chr11 142721745 142722037 -8061516 - AluSg SINE Alu -22 288 1 4356 147 107 82 chr11 142722050 142723182 -8060371 + L1MC2 LINE L1 5186 6342 -2 203 304 78 0 chr11 142723459 142723561 -8059992 + MIR SINE MIR 139 248 -14 727 316 118 14 chr11 142723607 142723962 -8059591 + L2 LINE L2 26 417 -2897 1721 277 93 18 chr11 142723966 142724620 -8058933 + L2 LINE L2 1065 1767 -1547 2339 88 0 3 chr11 142724636 142724931 -8058622 + AluSx SINE Alu 1 294 -18 2348 192 18 8 chr11 142724951 142725441 -8058112 - L1MB8 LINE L1 0 6989 6495 1642 164 36 11 chr11 142725446 142725727 -8057826 - AluJo SINE Alu -24 288 1 2579 187 43 56 chr11 142725730 142726388 -8057165 - L1MB8 LINE L1 -947 6010 5362 358 234 13 0 chr11 142726388 142726465 -8057088 + MLT1A1 LTR MaLR 1 78 -287 2280 113 0 19 chr11 142726469 142726787 -8056766 + AluSq SINE Alu 1 312 -1 1970 123 3 14 chr11 142726802 142726937 -8056616 + AluSx SINE Alu 1 136 -184 2347 80 0 7 chr11 142726937 142727254 -8056299 + AluSc SINE Alu 1 309 0 1970 123 3 14 chr11 142727254 142727441 -8056112 + AluSx SINE Alu 136 320 0 2140 137 55 38 chr11 142727451 142727817 -8055736 + MER83C LTR ERV1 2 373 0 4020 240 55 30 chr11 142727827 142729020 -8054533 + MER83C-int LTR ERV1 41 1049 -3872 509 133 36 12 chr11 142729207 142729290 -8054263 + MER61A-int LTR ERV1 4527 4611 -269 686 144 0 110 chr11 142729290 142729361 -8054192 + MER83B LTR ERV1 236 284 -94 2445 88 0 0 chr11 142729361 142729657 -8053896 - AluSg SINE Alu -14 296 1 686 144 0 110 chr11 142729657 142729731 -8053822 + MER83B LTR ERV1 284 365 -13 891 191 60 143 chr11 142729746 142730060 -8053493 + MLT1A1 LTR MaLR 78 365 0 3384 211 24 24 chr11 142730061 142730893 -8052660 - L1MB8 LINE L1 -1592 5365 4534 3149 199 26 3 chr11 142730900 142731479 -8052074 - L1MB8 LINE L1 -5773 1086 495 225 208 83 0 chr11 142731481 142731529 -8052024 - LTR8A LTR ERV1 0 727 676 2492 79 0 3 chr11 142731529 142731833 -8051720 + AluSc SINE Alu 1 303 -6 21 0 0 0 chr11 142731848 142731869 -8051684 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr11 142732023 142732043 -8051510 + (A)n Simple_repeat Simple_repeat 1 20 0 3204 175 62 17 chr11 142732043 142732700 -8050853 - LTR8A LTR ERV1 -40 687 1 2338 193 67 19 chr11 142732700 142733144 -8050409 - L1MB8 LINE L1 -6363 496 28 1932 148 24 12 chr11 142733144 142733483 -8050070 + MER61A LTR ERV1 1 343 0 2338 193 67 19 chr11 142733483 142733504 -8050049 - L1MB8 LINE L1 -6831 28 9 867 229 38 83 chr11 142733511 142733883 -8049670 + L2 LINE L2 1759 2113 -1201 2540 141 51 92 chr11 142733906 142734533 -8049020 - MER4B LTR ERV1 -5 774 1 502 203 8 49 chr11 142734552 142734675 -8048878 + LTR38B LTR ERV1 1 118 -492 3473 142 98 48 chr11 142734834 142735518 -8048035 + MER50 LTR ERV1 1 718 -16 1937 229 95 38 chr11 142735519 142736043 -8047510 - MLT2B3 LTR ERVL 0 554 1 10711 91 8 5 chr11 142736043 142737447 -8046106 - HERVL-B3 LTR ERVL 0 5654 4246 1234 253 80 45 chr11 142737447 142737826 -8045727 + L2 LINE L2 2194 2595 -719 2058 131 3 13 chr11 142737826 142738131 -8045422 - AluSx SINE Alu -10 302 1 1234 253 80 45 chr11 142738131 142738238 -8045315 + L2 LINE L2 2595 2697 -617 654 240 88 20 chr11 142738236 142738440 -8045113 + L2 LINE L2 2820 3037 -276 * 2538 87 0 0 chr11 142738583 142738892 -8044661 + AluSx SINE Alu 1 309 -3 974 139 33 0 chr11 142739053 142739204 -8044349 + AluJo SINE Alu 120 275 -37 1101 305 54 14 chr11 142739448 142739890 -8043663 + HERVL LTR ERVL 2806 3265 -2389 936 255 133 11 chr11 142739896 142740174 -8043379 + LTR16C LTR ERVL 171 482 -9 646 133 26 26 chr11 142740311 142740462 -8043091 + CT-rich Low_complexity Low_complexity 2 152 0 1375 227 10 14 chr11 142740505 142740800 -8042753 - AluJo SINE Alu -18 294 1 3810 165 109 7 chr11 142740892 142741570 -8041983 - MER21B LTR ERV1 -116 747 1 1591 177 72 0 chr11 142741724 142742001 -8041552 - AluJb SINE Alu -14 298 2 626 229 15 0 chr11 142742003 142742134 -8041419 - AluJo SINE Alu -178 134 2 292 308 0 68 chr11 142742140 142742273 -8041280 - MIR SINE MIR -101 161 38 2353 87 3 0 chr11 142743494 142743792 -8039761 - AluSc SINE Alu -10 299 1 24 0 0 0 chr11 142744113 142744137 -8039416 + AT_rich Low_complexity Low_complexity 1 24 0 1813 141 3 59 chr11 142744137 142744443 -8039110 - AluSx SINE Alu -23 289 1 2592 40 0 7 chr11 142744974 142745278 -8038275 - AluY SINE Alu -5 306 5 288 0 0 0 chr11 142745973 142746005 -8037548 + (CA)n Simple_repeat Simple_repeat 2 33 0 483 234 131 0 chr11 142746199 142746344 -8037209 + MER5A DNA MER1_type 8 171 -18 1133 84 177 44 chr11 142746358 142746561 -8036992 + MER30 DNA MER1_type 1 230 0 3078 184 108 26 chr11 142748442 142749349 -8034204 - L1MC5 LINE L1 -58 7903 6923 346 290 61 8 chr11 142749374 142749505 -8034048 + Charlie8 DNA MER1_type 90 227 -2190 189 259 222 0 chr11 142749588 142749642 -8033911 - MIR3 SINE MIR -48 160 95 335 289 66 55 chr11 142749868 142750124 -8033429 + L2 LINE L2 2621 2879 -435 315 177 0 0 chr11 142750780 142750842 -8032711 + (TG)n Simple_repeat Simple_repeat 1 62 0 194 0 39 0 chr11 142750957 142750983 -8032570 + (CA)n Simple_repeat Simple_repeat 2 28 0 359 236 27 73 chr11 142751448 142751558 -8031995 + MIR SINE MIR 40 144 -118 612 250 8 107 chr11 142751586 142751830 -8031723 - MIR SINE MIR -22 240 21 2136 131 0 3 chr11 142751909 142752207 -8031346 - AluSx SINE Alu -15 297 1 498 193 0 0 chr11 142752286 142752369 -8031184 + FLAM_A SINE Alu 2 84 -58 322 311 67 31 chr11 142752669 142752839 -8030714 + MIR SINE MIR 6 180 -82 2114 137 0 22 chr11 142754782 142755095 -8028458 - AluSx SINE Alu -6 306 1 300 333 65 20 chr11 142755145 142755298 -8028255 + L3 LINE CR1 1343 1502 -75 245 195 0 0 chr11 142755736 142755777 -8027776 - L2 LINE L2 -15 3257 3217 330 282 10 10 chr11 142756853 142756956 -8026597 + GA-rich Low_complexity Low_complexity 2 104 0 4059 150 40 11 chr11 142757022 142757139 -8026414 + L1MA4 LINE L1 4588 4700 -1600 1508 195 14 24 chr11 142757139 142757436 -8026117 + AluJo SINE Alu 1 294 -18 4059 150 40 11 chr11 142757436 142758338 -8025215 + L1MA4 LINE L1 4700 5659 -641 192 77 0 0 chr11 142758338 142758364 -8025189 + (TG)n Simple_repeat Simple_repeat 2 27 0 4059 150 40 11 chr11 142758364 142758733 -8024820 + L1MA4 LINE L1 5659 6016 -284 442 126 81 0 chr11 142758752 142758839 -8024714 + L1MB2 LINE L1 6078 6171 0 23 0 0 0 chr11 142758879 142758902 -8024651 + AT_rich Low_complexity Low_complexity 1 23 0 202 184 53 0 chr11 142758993 142759031 -8024522 + L3 LINE CR1 900 939 -638 469 286 43 7 chr11 142759160 142759300 -8024253 + MIR SINE MIR 4 148 -114 2017 118 80 0 chr11 142759318 142759606 -8023947 - AluSx SINE Alu -1 311 1 1324 128 24 23 chr11 142759661 142760111 -8023442 + LTR54 LTR ERV1 1 510 0 197 261 43 0 chr11 142760111 142760180 -8023373 + MIR SINE MIR 189 260 -2 391 301 55 107 chr11 142760197 142760597 -8022956 - L2 LINE L2 -16 3256 2883 2054 148 0 0 chr11 142760597 142760894 -8022659 + AluSx SINE Alu 1 297 -15 391 301 55 107 chr11 142760894 142760968 -8022585 - L2 LINE L2 -389 2883 2807 220 297 0 16 chr11 142761077 142761141 -8022412 + L2 LINE L2 3210 3272 0 21 0 0 0 chr11 142761372 142761393 -8022160 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr11 142761422 142761451 -8022102 + AT_rich Low_complexity Low_complexity 1 29 0 6577 274 115 30 chr11 142761465 142762346 -8021207 + L2 LINE L2 408 1213 -2100 1781 173 14 3 chr11 142762346 142762630 -8020923 - AluJo SINE Alu -25 287 1 6577 274 115 30 chr11 142762630 142763265 -8020288 + L2 LINE L2 1213 1793 -1520 1875 189 22 8 chr11 142763265 142763625 -8019928 - MLT1A1 LTR MaLR 0 365 1 6577 274 115 30 chr11 142763625 142764771 -8018782 + L2 LINE L2 1793 3295 -18 324 0 0 0 chr11 142764773 142764809 -8018744 + (T)n Simple_repeat Simple_repeat 1 36 0 1752 164 18 7 chr11 142765229 142765515 -8018038 - AluJb SINE Alu -23 289 1 280 233 27 0 chr11 142765540 142765613 -8017940 + MER69 DNA AcHobo 2450 2524 -2 344 226 217 9 chr11 142766655 142766770 -8016783 + MIR SINE MIR 9 147 -115 381 296 189 13 chr11 142766816 142767110 -8016443 + L1MC4 LINE L1 7689 8012 -30 346 275 9 37 chr11 142767122 142767231 -8016322 + MIR SINE MIR 147 252 -10 207 0 0 0 chr11 142767237 142767260 -8016293 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1220 53 0 0 chr11 142767260 142767412 -8016141 - L1PA3 LINE L1 0 6155 6004 410 235 76 22 chr11 142767432 142767611 -8015942 - MIR SINE MIR -62 146 3 810 268 144 40 chr11 142772370 142772766 -8010787 + L3 LINE CR1 1115 1551 -26 207 0 0 0 chr11 142772768 142772791 -8010762 + (T)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr11 142772956 142772981 -8010572 + GC_rich Low_complexity Low_complexity 1 25 0 279 54 0 0 chr11 142773007 142773044 -8010509 + (A)n Simple_repeat Simple_repeat 1 37 0 2533 54 0 7 chr11 142773476 142773821 -8009732 - AluY SINE Alu 0 311 1 1064 170 11 27 chr11 142773821 142774009 -8009544 - AluSg/x SINE Alu -2 310 126 515 238 109 25 chr11 142774277 142774521 -8009032 + MER77 LTR ERV1 295 599 -6 1009 251 19 42 chr11 142774748 142775126 -8008427 + L1MC/D LINE L1 5290 5658 -2150 708 198 54 12 chr11 142775179 142775346 -8008207 + MLT1H LTR MaLR 71 244 -305 397 274 39 0 chr11 142775635 142775737 -8007816 + MLT1-int LTR MaLR 440 545 -826 800 173 0 0 chr11 142775846 142775979 -8007574 + FLAM_C SINE Alu 1 133 0 22 0 0 0 chr11 142775989 142776011 -8007542 + GC_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr11 142776173 142776203 -8007350 + (T)n Simple_repeat Simple_repeat 1 30 0 270 322 74 0 chr11 142777119 142777240 -8006313 + MIR SINE MIR 62 191 -71 409 296 39 39 chr11 142778155 142778334 -8005219 + MER5A DNA MER1_type 7 185 -4 935 244 38 38 chr11 142879402 142879664 -7903889 + MIR SINE MIR 1 262 0 182 200 89 0 chr11 142879966 142880011 -7903542 - L2 LINE L2 0 3272 3224 223 316 26 0 chr11 142880393 142880469 -7903084 - MIR3 SINE MIR -2 206 129 225 0 0 0 chr11 142880611 142880636 -7902917 + (T)n Simple_repeat Simple_repeat 1 25 0 622 261 203 10 chr11 142881116 142881323 -7902230 + MIR SINE MIR 5 251 -11 242 302 0 0 chr11 142881389 142881452 -7902101 + L3 LINE CR1 1514 1576 -1 321 275 64 9 chr11 142881737 142881846 -7901707 + MIR SINE MIR 30 144 -64 367 290 91 44 chr11 142883610 142883810 -7899743 + MIR SINE MIR 45 250 -12 269 265 20 10 chr11 142885308 142885406 -7898147 - L1MC5 LINE L1 -44 7917 7819 2233 188 38 30 chr11 142885821 142886322 -7897231 + MLT1D LTR MaLR 1 505 0 2288 88 7 3 chr11 142886848 142887153 -7896400 + AluSx SINE Alu 1 306 -6 958 228 30 35 chr11 142887563 142887795 -7895758 + MIR SINE MIR 29 259 -3 255 266 161 16 chr11 142890149 142890273 -7893280 - MIR SINE MIR -7 255 114 1139 228 84 47 chr11 142890309 142890396 -7893157 - MLT1C LTR MaLR -48 419 337 2182 135 6 15 chr11 142890396 142890736 -7892817 + MER1B DNA MER1_type 1 337 0 1139 228 84 47 chr11 142890736 142891052 -7892501 - MLT1C LTR MaLR -130 337 1 305 311 104 22 chr11 142891240 142891375 -7892178 - L2 LINE L2 0 3272 3127 955 270 80 54 chr11 142891578 142892004 -7891549 + L2 LINE L2 2877 3313 0 254 261 51 94 chr11 142892303 142892441 -7891112 - MIR3 SINE MIR -62 146 15 240 35 0 0 chr11 142892780 142892809 -7890744 + (CAGGG)n Simple_repeat Simple_repeat 1 29 0 2744 104 303 135 chr11 142894499 142895315 -7888238 + pTR5 LTR ERV1 1486 2438 0 255 219 125 0 chr11 142896007 142896071 -7887482 + MIR SINE MIR 111 182 -80 194 268 84 14 chr11 142899944 142900015 -7883538 - MIR SINE MIR -152 110 35 426 308 38 49 chr11 142900324 142900434 -7883119 + MIR3 SINE MIR 25 134 -74 2190 146 75 27 chr11 142900434 142900846 -7882707 + MSTB1 LTR MaLR 1 432 0 426 308 38 49 chr11 142900846 142900920 -7882633 + MIR3 SINE MIR 134 207 -1 249 341 103 16 chr11 142902126 142902252 -7881301 - L2 LINE L2 -15 3257 3121 499 245 87 58 chr11 142903128 142903336 -7880217 - MIR SINE MIR -38 224 11 339 78 0 0 chr11 142903807 142903858 -7879695 + (TC)n Simple_repeat Simple_repeat 2 52 0 213 39 0 0 chr11 142903858 142903884 -7879669 + (CA)n Simple_repeat Simple_repeat 1 26 0 855 174 25 0 chr11 142904163 142904324 -7879229 + L1MB2 LINE L1 5990 6154 -17 455 290 47 21 chr11 142904444 142904637 -7878916 + L1ME3A LINE L1 2401 2598 -3548 * 2359 241 62 48 chr11 142904624 142905451 -7878102 + L1ME3A LINE L1 5328 6165 -5 390 242 31 43 chr11 142905456 142905617 -7877936 + L1MC5 LINE L1 7508 7666 -295 1019 272 89 29 chr11 142905819 142906304 -7877249 + L1ME3 LINE L1 4477 4990 -1156 2409 224 50 17 chr11 142906305 142906904 -7876649 - MER20B DNA MER1_type -164 619 1 619 224 99 21 chr11 142906925 142907196 -7876357 + L1ME3 LINE L1 5678 5962 -208 21 0 0 0 chr11 142907472 142907493 -7876060 + AT_rich Low_complexity Low_complexity 1 21 0 265 242 0 81 chr11 142907522 142907621 -7875932 - L2 LINE L2 -673 2641 2551 2378 81 10 0 chr11 142913172 142913468 -7870085 + AluSx SINE Alu 1 299 -13 1483 199 58 10 chr11 142914100 142914411 -7869142 + MER58B DNA MER1_type 5 330 -11 204 333 105 37 chr11 142914440 142914602 -7868951 - MIR3 SINE MIR 0 208 36 2288 104 0 0 chr11 142916069 142916408 -7867145 - AluSx SINE Alu 0 312 1 1161 226 69 36 chr11 142916679 142917202 -7866351 - L2 LINE L2 -1 3312 2708 335 294 100 85 chr11 142918829 142919339 -7864214 - L2 LINE L2 -24 3248 2725 1619 306 96 23 chr11 142919404 142920237 -7863316 - L3 LINE CR1 -100 1477 584 289 336 43 14 chr11 142920386 142920526 -7863027 - L2 LINE L2 -2 3270 3127 2068 126 23 16 chr11 142920796 142921105 -7862448 + AluSx SINE Alu 1 311 -1 286 306 0 0 chr11 142921403 142921475 -7862078 - L3 LINE CR1 -1182 395 324 1351 89 0 0 chr11 142922776 142922944 -7860609 - AluSg/x SINE Alu -10 302 135 203 228 25 51 chr11 142923072 142923151 -7860402 - L2 LINE L2 -1 3312 3236 1951 164 0 0 chr11 142923375 142923679 -7859874 - AluSx SINE Alu -8 304 1 235 353 60 0 chr11 142924092 142924208 -7859345 + MIR SINE MIR 28 150 -58 526 248 119 15 chr11 142925869 142926071 -7857482 + MIR SINE MIR 19 241 -21 419 176 0 0 chr11 142926277 142926351 -7857202 - MER20 DNA MER1_type 0 219 146 598 180 0 10 chr11 142926351 142926451 -7857102 - Tigger7 DNA MER2_type 0 2487 2389 * 1471 199 11 8 chr11 142926449 142926715 -7856838 - Tigger7 DNA MER2_type -466 267 1 667 182 95 40 chr11 142926715 142926860 -7856693 - MER20 DNA MER1_type -65 154 2 189 295 57 25 chr11 142927410 142927532 -7856021 + L2 LINE L2 1898 2023 -1291 263 235 78 46 chr11 142928012 142928165 -7855388 - HAL1 LINE L1 -138 2369 2212 256 236 36 18 chr11 142928165 142928330 -7855223 + (CATATA)n Simple_repeat Simple_repeat 2 169 0 450 218 11 0 chr11 142928468 142928555 -7854998 - L1MCa LINE L1 -6105 321 234 479 140 37 47 chr11 142928597 142928704 -7854849 - L1MCa LINE L1 -6190 236 131 * 7391 38 5 1 chr11 142928700 142929572 -7853981 - L1PA5 LINE L1 0 6154 5280 684 303 25 11 chr11 142929578 142929855 -7853698 - L3 LINE CR1 -127 1450 1170 226 328 114 0 chr11 142930420 142930551 -7853002 + L2 LINE L2 3127 3272 0 288 297 81 39 chr11 142931660 142932000 -7851553 - LTR16A1 LTR ERVL -2 455 59 448 334 81 28 chr11 142932211 142933628 -7849925 - L1MC4a LINE L1 -483 5681 4338 2006 150 0 0 chr11 142934514 142934800 -7848753 - AluSx SINE Alu -15 297 12 370 182 0 0 chr11 142936493 142936559 -7846994 - MER53 DNA DNA 0 189 124 308 245 10 69 chr11 142936505 142936607 -7846946 + MER53 DNA DNA 23 118 -71 * 216 0 0 0 chr11 142938267 142938291 -7845262 + (CTG)n Simple_repeat Simple_repeat 1 24 0 196 354 9 35 chr11 142938634 142938747 -7844806 - MIR SINE MIR -79 129 20 207 250 0 0 chr11 142939886 142939926 -7843627 + polypyrimidine Low_complexity Low_complexity 5 44 0 203 146 24 0 chr11 142940384 142940425 -7843128 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 2237 69 22 4 chr11 142940659 142940961 -7842592 + AluSc SINE Alu 1 307 0 185 140 140 35 chr11 142941143 142941200 -7842353 + MIR3 SINE MIR 4 66 -142 1064 213 11 82 chr11 142941268 142941320 -7842233 + MIR SINE MIR 1 55 -207 1858 147 23 3 chr11 142941320 142941620 -7841933 - AluSg SINE Alu -4 306 1 1064 213 11 82 chr11 142941620 142941849 -7841704 + MIR SINE MIR 55 262 0 1615 155 53 100 chr11 142942468 142942793 -7840760 - MLT1B LTR MaLR 0 567 85 2399 95 3 0 chr11 142942793 142943098 -7840455 + AluSq SINE Alu 2 307 -6 1615 155 53 100 chr11 142943098 142943180 -7840373 - MLT1B LTR MaLR -482 85 1 286 182 19 188 chr11 142943180 142943334 -7840219 + L2 LINE L2 3186 3313 0 186 302 224 9 chr11 142943387 142943503 -7840050 - MIR3 SINE MIR -45 163 23 2562 71 3 0 chr11 142943610 142943921 -7839632 + AluSx SINE Alu 1 312 0 305 233 70 0 chr11 142945108 142945194 -7838359 + MER96 DNA MER1_type? 84 175 0 2358 224 74 40 chr11 142945758 142946531 -7837022 - L1M4 LINE L1 -1195 4951 4153 216 163 0 0 chr11 142946532 142946575 -7836978 + CT-rich Low_complexity Low_complexity 1 43 0 591 271 13 23 chr11 142946605 142946807 -7836746 - L1M4 LINE L1 -1954 4192 3997 615 242 30 79 chr11 142946976 142947381 -7836172 + L1M4c LINE L1 1287 1671 -4713 347 212 26 140 chr11 142947402 142947696 -7835857 + L1M4c LINE L1 2174 2354 -4028 2420 166 29 16 chr11 142947696 142948148 -7835405 + L1PA16 LINE L1 5706 6163 -3 347 212 26 140 chr11 142948148 142948334 -7835219 + L1M4c LINE L1 2354 2559 -3823 253 325 81 0 chr11 142950501 142950624 -7832929 - L2 LINE L2 -954 2360 2228 191 222 19 19 chr11 142951133 142951187 -7832366 + L2 LINE L2 1877 1930 -1384 208 346 0 0 chr11 142951546 142951624 -7831929 - MIR3 SINE MIR -2 206 129 611 260 78 52 chr11 142951975 142952283 -7831270 + MLT1I LTR MaLR 86 401 -8 805 282 110 28 chr11 142952815 142953241 -7830312 - HAL1 LINE L1 0 2507 2047 1221 284 64 47 chr11 142953255 142953696 -7829857 - HAL1 LINE L1 -569 1938 1483 2576 47 3 3 chr11 142953696 142953993 -7829560 - AluY SINE Alu -14 297 1 1221 284 64 47 chr11 142953993 142954126 -7829427 - HAL1 LINE L1 -1024 1483 1354 934 259 55 63 chr11 142954137 142954663 -7828890 - HAL1 LINE L1 -1308 1199 678 283 313 9 45 chr11 142955717 142955829 -7827724 - L2 LINE L2 -43 3270 3163 1514 185 63 30 chr11 142955892 142956194 -7827359 - AluJo SINE Alu 0 312 1 288 98 0 0 chr11 142956352 142956393 -7827160 - 5S rRNA rRNA -80 41 1 535 290 136 9 chr11 142956591 142956812 -7826741 + MIR SINE MIR 8 256 -6 212 346 29 0 chr11 142956820 142956924 -7826629 - L2 LINE L2 -94 3219 3113 453 250 23 23 chr11 142956959 142957091 -7826462 + L2 LINE L2 3140 3271 -1 244 335 0 0 chr11 142958104 142958283 -7825270 + (TCTG)n Simple_repeat Simple_repeat 1 179 0 * 331 282 6 11 chr11 142958203 142958384 -7825169 + (TG)n Simple_repeat Simple_repeat 1 180 0 233 317 6 17 chr11 142958327 142958507 -7825046 + (TCTG)n Simple_repeat Simple_repeat 1 178 0 * 337 318 0 0 chr11 142958439 142958612 -7824941 + (TG)n Simple_repeat Simple_repeat 2 174 0 300 328 0 0 chr11 142958700 142958880 -7824673 + (TG)n Simple_repeat Simple_repeat 1 180 0 294 328 0 0 chr11 142958959 142959136 -7824417 + (TG)n Simple_repeat Simple_repeat 2 178 0 264 59 0 0 chr11 142960077 142960111 -7823442 + (CA)n Simple_repeat Simple_repeat 1 34 0 198 143 0 0 chr11 142960987 142961022 -7822531 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 328 315 9 19 chr11 142961140 142961248 -7822305 + MIR SINE MIR 156 262 0 1358 174 42 26 chr11 142962054 142962365 -7821188 - MER33 DNA MER1_type -8 316 1 342 0 0 0 chr11 142962680 142962718 -7820835 + (TG)n Simple_repeat Simple_repeat 1 38 0 496 265 23 8 chr11 142963447 142963579 -7819974 - MIR SINE MIR -12 250 117 207 287 109 20 chr11 142963887 142963988 -7819565 - MER5A DNA MER1_type -33 156 47 265 338 64 19 chr11 142964205 142964362 -7819191 - L2 LINE L2 -556 2758 2595 270 364 25 16 chr11 142964397 142964518 -7819035 - L2 LINE L2 0 3272 3151 1469 177 73 57 chr11 142964573 142964957 -7818596 + MLT1B LTR MaLR 1 390 0 190 301 21 84 chr11 142965457 142965600 -7817953 + L2 LINE L2 3179 3312 -1 25 51 0 0 chr11 142966139 142966178 -7817375 + AT_rich Low_complexity Low_complexity 1 39 0 267 302 0 0 chr11 142967648 142967734 -7815819 + G-rich Low_complexity Low_complexity 1 86 0 194 0 39 0 chr11 142967861 142967887 -7815666 + (CGG)n Simple_repeat Simple_repeat 2 28 0 233 114 43 14 chr11 142967972 142968042 -7815511 + GA-rich Low_complexity Low_complexity 2 73 0 209 33 33 0 chr11 142968191 142968221 -7815332 + (CCG)n Simple_repeat Simple_repeat 3 33 0 22 80 0 0 chr11 142969601 142969651 -7813902 + GC_rich Low_complexity Low_complexity 1 50 0 214 311 77 18 chr11 142972548 142972672 -7810881 + MIR SINE MIR 12 143 -65 482 204 7 73 chr11 142974297 142974434 -7809119 - L2 LINE L2 -1 3312 3185 455 344 97 0 chr11 142974477 142974663 -7808890 + MIR SINE MIR 53 256 -6 585 305 21 5 chr11 142975550 142975737 -7807816 + MIR3 SINE MIR 19 208 0 563 279 95 34 chr11 142976031 142976271 -7807282 + MIR SINE MIR 3 255 -7 217 232 22 59 chr11 142976304 142976410 -7807143 - MIR SINE MIR -64 144 91 273 344 16 8 chr11 142977440 142977568 -7805985 + MIR3 SINE MIR 76 204 -4 516 32 0 0 chr11 142978252 142978314 -7805239 + (GGAA)n Simple_repeat Simple_repeat 2 63 0 266 149 30 42 chr11 142978657 142978735 -7804818 - MIR SINE MIR -78 130 53 236 209 55 99 chr11 142978799 142978890 -7804663 + MIR SINE MIR 117 203 -59 540 289 25 79 chr11 142979352 142979667 -7803886 - L2 LINE L2 -3 3269 2972 471 252 15 23 chr11 142980484 142980615 -7802938 + MIR SINE MIR 31 160 -102 180 111 0 0 chr11 142980988 142981015 -7802538 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 484 237 23 92 chr11 142981105 142981278 -7802275 - MIR3 SINE MIR 0 208 48 2251 92 7 0 chr11 142981281 142981564 -7801989 + AluSp SINE Alu 8 292 -21 1055 122 6 0 chr11 142981564 142981736 -7801817 + (GGAA)n Simple_repeat Simple_repeat 3 175 0 449 117 26 0 chr11 142981737 142981814 -7801739 + GA-rich Low_complexity Low_complexity 4 82 0 294 356 112 5 chr11 142981855 142982043 -7801510 + MIR SINE MIR 20 227 -35 452 318 68 48 chr11 142982202 142982642 -7800911 - L2 LINE L2 0 3313 2865 674 257 125 46 chr11 142983007 142983351 -7800202 + L2 LINE L2 2767 3136 -177 204 40 0 0 chr11 142983433 142983458 -7800095 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 450 232 90 58 chr11 142983526 142983681 -7799872 - MIR3 SINE MIR -5 203 44 915 291 29 0 chr11 142984101 142984345 -7799208 - MIR SINE MIR 0 262 12 246 333 36 27 chr11 142985210 142985321 -7798232 - MER81 DNA DNA -1 113 2 416 336 55 14 chr11 142985449 142985666 -7797887 + MIR SINE MIR 7 232 -30 244 346 40 20 chr11 142986045 142986146 -7797407 - MIR3 SINE MIR -32 176 74 2515 15 0 0 chr11 142986259 142986525 -7797028 - AluYb8 SINE Alu -16 302 37 197 224 121 0 chr11 142987413 142987471 -7796082 - MIR SINE MIR -166 96 32 217 277 0 0 chr11 142988062 142988109 -7795444 + L2 LINE L2 3259 3305 -8 5303 176 38 31 chr11 142988394 142989416 -7794137 - L1MB4 LINE L1 -2 6178 5165 1913 176 3 3 chr11 142989416 142989723 -7793830 + AluJo SINE Alu 1 307 -5 5303 176 38 31 chr11 142989723 142990844 -7792709 - L1MB4 LINE L1 -1015 5165 4021 434 219 177 43 chr11 142991048 142991212 -7792341 - MIR SINE MIR -6 256 71 431 309 12 9 chr11 142992377 142992547 -7791006 + L1MC4 LINE L1 1995 6983 -1339 539 228 0 39 chr11 142992879 142992954 -7790599 - MER94 DNA DNA -5 129 59 2281 119 0 0 chr11 142992954 142993256 -7790297 - AluSc SINE Alu -7 302 1 539 228 0 39 chr11 142993256 142993307 -7790246 - MER94 DNA DNA -75 59 8 256 354 124 18 chr11 142993364 142993590 -7789963 + L2 LINE L2 2557 2806 -508 314 301 26 72 chr11 142994141 142994334 -7789219 - MIR3 SINE MIR -16 192 9 217 282 254 0 chr11 142995626 142995736 -7787817 - MIR SINE MIR 0 262 125 336 297 34 25 chr11 142996889 142997007 -7786546 + MIR SINE MIR 89 207 -55 274 309 0 12 chr11 142997822 142997906 -7785647 - MIR SINE MIR -12 250 168 666 318 37 16 chr11 142997912 142998157 -7785396 - MIR SINE MIR 0 262 13 224 246 16 16 chr11 142998258 142998319 -7785234 - MIR SINE MIR -182 80 20 435 38 0 0 chr11 142998911 142998964 -7784589 + (CA)n Simple_repeat Simple_repeat 2 54 0 504 321 26 16 chr11 142999616 142999809 -7783744 + MIR3 SINE MIR 8 202 -6 397 165 13 0 chr11 143000026 143000105 -7783448 - MER3 DNA MER1_type -79 130 98 180 0 0 0 chr11 143000696 143000716 -7782837 + (CAA)n Simple_repeat Simple_repeat 2 21 0 261 291 0 25 chr11 143001812 143001867 -7781686 + CT-rich Low_complexity Low_complexity 3 57 -22 2079 157 0 0 chr11 143001867 143002180 -7781373 - AluSq SINE Alu 0 313 1 261 291 0 25 chr11 143002180 143002203 -7781350 + CT-rich Low_complexity Low_complexity 57 79 0 2103 121 3 10 chr11 143002601 143002922 -7780631 + AluSq SINE Alu 1 319 0 398 321 42 45 chr11 143003348 143003681 -7779872 + L2 LINE L2 2360 2691 -623 206 286 39 0 chr11 143003765 143003842 -7779711 + L2 LINE L2 3136 3215 -57 1279 146 77 29 chr11 143006197 143006443 -7777110 - AluJo SINE Alu -54 258 1 355 200 63 0 chr11 143007378 143007473 -7776080 - MER5A DNA MER1_type -80 109 9 208 370 65 0 chr11 143008048 143008140 -7775413 + L2 LINE L2 3209 3306 -7 471 316 86 53 chr11 143009111 143009528 -7774025 - L2 LINE L2 -10 3262 2832 681 278 11 0 chr11 143009635 143009822 -7773731 + MIR SINE MIR 60 248 -14 347 313 68 60 chr11 143009840 143010208 -7773345 - L2 LINE L2 -568 2746 2376 222 222 0 0 chr11 143010229 143010283 -7773270 + CT-rich Low_complexity Low_complexity 4 57 0 377 337 130 12 chr11 143010320 143010812 -7772741 - L2 LINE L2 -969 2345 1796 355 276 35 24 chr11 143011105 143011275 -7772278 - L2 LINE L2 -183 3089 2918 362 341 31 22 chr11 143011870 143012099 -7771454 - L2 LINE L2 -1338 1976 1746 202 216 0 0 chr11 143012421 143012458 -7771095 + (CA)n Simple_repeat Simple_repeat 2 38 0 554 216 18 0 chr11 143013656 143013767 -7769786 + MER81 DNA DNA 1 113 -1 434 297 32 38 chr11 143013940 143014125 -7769428 + MIR SINE MIR 73 256 -6 902 250 57 8 chr11 143014370 143014634 -7768919 - L2 LINE L2 -2 3311 3035 938 69 0 0 chr11 143015480 143015596 -7767957 - AluSg/x SINE Alu -5 307 192 206 333 156 0 chr11 143016313 143016403 -7767150 + MIR SINE MIR 46 149 -113 1960 158 3 7 chr11 143016487 143016790 -7766763 - AluJb SINE Alu -10 302 1 467 340 57 10 chr11 143016988 143017197 -7766356 - MIR SINE MIR -21 241 23 205 269 19 0 chr11 143017784 143017836 -7765717 + CT-rich Low_complexity Low_complexity 5 57 0 201 266 81 41 chr11 143018297 143018439 -7765114 + MIR SINE MIR 1 149 -63 * 203 200 0 73 chr11 143018436 143018491 -7765062 - MIR SINE MIR -160 102 52 2252 112 0 0 chr11 143018503 143018788 -7764765 + AluSx SINE Alu 2 286 -26 225 0 0 0 chr11 143018790 143018815 -7764738 + (CTAA)n Simple_repeat Simple_repeat 3 27 0 200 97 32 0 chr11 143019758 143019789 -7763764 + CT-rich Low_complexity Low_complexity 2 33 0 303 176 0 0 chr11 143020041 143020132 -7763421 + (CA)n Simple_repeat Simple_repeat 2 92 0 203 298 107 78 chr11 143020426 143020631 -7762922 + MIR SINE MIR 48 258 -4 357 285 238 12 chr11 143020793 143020965 -7762588 - MIR SINE MIR -1 261 51 232 286 57 0 chr11 143021280 143021350 -7762203 - L2 LINE L2 -53 3219 3146 801 293 53 14 chr11 143021777 143022064 -7761489 - MLT1L LTR MaLR 0 615 233 2180 123 0 13 chr11 143022186 143022486 -7761067 + AluSq SINE Alu 3 298 -15 2030 239 70 33 chr11 143022487 143023235 -7760318 + L1MC4a LINE L1 5184 5399 -747 184 274 161 27 chr11 143023433 143023619 -7759934 - L2 LINE L2 -739 2575 2365 1795 102 78 4 chr11 143023951 143024206 -7759347 + AluSg SINE Alu 26 299 -11 194 233 0 50 chr11 143025174 143025234 -7758319 - MIR SINE MIR -55 153 97 1108 93 0 8 chr11 143025619 143025857 -7757696 + (TG)n Simple_repeat Simple_repeat 1 235 0 2075 136 3 3 chr11 143026268 143026562 -7756991 - AluSx SINE Alu -18 294 1 379 242 142 8 chr11 143028291 143028411 -7755142 + L2 LINE L2 3136 3271 -1 283 292 56 22 chr11 143028445 143028534 -7755019 + MIR3 SINE MIR 90 181 -27 234 333 0 0 chr11 143029472 143029547 -7754006 - MIR3 SINE MIR -49 159 85 325 119 0 0 chr11 143030126 143030185 -7753368 - L1MB2 LINE L1 -1 6170 6112 2599 165 6 27 chr11 143030291 143030776 -7752777 - L1MB3 LINE L1 -66 6117 5643 917 216 9 28 chr11 143031170 143031383 -7752170 + MER3 DNA MER1_type 1 209 0 347 151 0 55 chr11 143031414 143031487 -7752066 + MIR SINE MIR 194 262 0 591 312 103 8 chr11 143032333 143032567 -7750986 - Charlie8 DNA MER1_type -2161 256 1 327 304 213 14 chr11 143033787 143033994 -7749559 - MIR SINE MIR -14 248 1 581 267 16 27 chr11 143034042 143034229 -7749324 - MIR3 SINE MIR -11 197 13 623 290 85 5 chr11 143035023 143035223 -7748330 - L3 LINE CR1 -125 1452 1237 289 263 158 0 chr11 143035189 143035284 -7748269 + L3 LINE CR1 1242 1351 -226 * 735 263 105 4 chr11 143035372 143035600 -7747953 - MIR SINE MIR -4 258 8 337 333 39 72 chr11 143035630 143035990 -7747563 - L3 LINE CR1 -434 1143 796 359 304 40 80 chr11 143036170 143036394 -7747159 - L3 LINE CR1 -788 789 575 389 322 41 0 chr11 143036511 143036632 -7746921 - L2 LINE L2 0 3272 3147 1571 262 75 39 chr11 143039961 143040519 -7743034 - MLT1G1 LTR MaLR -17 578 1 463 283 133 0 chr11 143041370 143041550 -7742003 - MIR SINE MIR -12 250 47 410 326 119 17 chr11 143041888 143042091 -7741462 + MIR SINE MIR 30 247 -15 212 295 0 16 chr11 143043474 143043535 -7740018 + GA-rich Low_complexity Low_complexity 2 61 0 2333 98 7 7 chr11 143044612 143044917 -7738636 + AluSg SINE Alu 6 310 0 206 232 0 71 chr11 143045888 143045944 -7737609 + L2 LINE L2 3262 3313 0 195 252 26 93 chr11 143046024 143046175 -7737378 + MIR SINE MIR 120 260 -2 187 255 0 20 chr11 143046499 143046550 -7737003 + L2 LINE L2 2934 2983 -289 2509 80 0 0 chr11 143046652 143046954 -7736599 - AluY SINE Alu -9 302 1 355 309 137 20 chr11 143048315 143048519 -7735034 - MIR SINE MIR -27 235 8 180 0 0 0 chr11 143048933 143048953 -7734600 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1334 199 116 48 chr11 143049128 143049499 -7734054 - MSTD LTR MaLR 0 396 1 275 270 209 0 chr11 143049621 143049736 -7733817 + MIR SINE MIR 49 187 -75 225 233 55 0 chr11 143051451 143051524 -7732029 + Charlie7 DNA MER1_type 36 112 -2500 219 152 93 7 chr11 143051622 143051773 -7731780 + (TA)n Simple_repeat Simple_repeat 2 165 0 293 151 57 0 chr11 143051822 143051875 -7731678 - FLAM SINE Alu -23 110 55 327 139 56 42 chr11 143051898 143051970 -7731583 - L1MCa LINE L1 -4362 2064 1992 326 246 14 0 chr11 143051978 143052047 -7731506 - L1MCa LINE L1 -4362 2064 1995 189 143 65 13 chr11 143052053 143052130 -7731423 + (TA)n Simple_repeat Simple_repeat 2 82 0 1937 171 3 12 chr11 143052407 143052753 -7730800 - MER2 DNA MER2_type -1 343 1 21 0 0 0 chr11 143052799 143052820 -7730733 + AT_rich Low_complexity Low_complexity 1 21 0 1798 116 39 0 chr11 143052821 143053079 -7730474 + AluSp SINE Alu 1 268 -45 1790 135 20 26 chr11 143053275 143053579 -7729974 + AluSp SINE Alu 11 312 -1 732 158 0 8 chr11 143053579 143053699 -7729854 - FLAM_A SINE Alu -14 119 1 236 216 31 62 chr11 143053783 143053880 -7729673 - L1MC5 LINE L1 -35 7926 7833 282 312 13 65 chr11 143054257 143054411 -7729142 - MIR3 SINE MIR -28 180 35 184 30 61 0 chr11 143055256 143055289 -7728264 + (TA)n Simple_repeat Simple_repeat 1 35 0 412 352 74 13 chr11 143055823 143056121 -7727432 - L2 LINE L2 -569 2745 2430 334 250 152 8 chr11 143056688 143056820 -7726733 - MIR SINE MIR -11 251 101 272 320 130 59 chr11 143056978 143057231 -7726322 + L2 LINE L2 2999 3269 -3 415 191 59 27 chr11 143057938 143058085 -7725468 + MIR SINE MIR 37 180 -60 326 350 48 0 chr11 143058443 143058546 -7725007 - L2 LINE L2 -15 3257 3150 250 225 56 45 chr11 143058577 143058666 -7724887 - MIR SINE MIR -65 143 54 236 288 0 38 chr11 143058673 143058753 -7724800 + MIR SINE MIR 175 251 -11 390 279 82 60 chr11 143058964 143059147 -7724406 - L2 LINE L2 -1 3312 3126 477 303 95 35 chr11 143060972 143061203 -7722350 + MIR SINE MIR 13 257 -5 234 62 0 0 chr11 143062740 143062772 -7720781 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 217 211 0 39 chr11 143062827 143062879 -7720674 + MIR3 SINE MIR 157 206 -2 1877 148 16 35 chr11 143063345 143063662 -7719891 - AluJo SINE Alu -1 311 1 2319 104 0 22 chr11 143063665 143063981 -7719572 - AluSc SINE Alu 0 309 1 434 269 48 14 chr11 143064402 143064547 -7719006 + MIR SINE MIR 46 195 -67 258 313 23 8 chr11 143066253 143066381 -7717172 + CT-rich Low_complexity Low_complexity 2 131 0 253 358 7 33 chr11 143066529 143066679 -7716874 + MIR SINE MIR 3 149 -59 2338 92 3 0 chr11 143068491 143068784 -7714769 + AluY SINE Alu 1 294 -17 207 337 79 0 chr11 143069477 143069578 -7713975 + MIR SINE MIR 42 150 -58 365 219 0 0 chr11 143069713 143069786 -7713767 - MIR SINE MIR -61 147 75 428 150 12 0 chr11 143071184 143071264 -7712289 + (TG)n Simple_repeat Simple_repeat 2 82 0 467 207 0 0 chr11 143073394 143073481 -7710072 - L2 LINE L2 0 3313 3227 482 326 115 5 chr11 143075800 143076018 -7707535 - MIR SINE MIR -1 261 20 554 266 84 7 chr11 143077122 143077276 -7706277 + MIR3 SINE MIR 33 198 -10 189 0 0 0 chr11 143077276 143077297 -7706256 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 437 318 141 14 chr11 143077553 143077773 -7705780 - MIR SINE MIR -11 251 4 255 311 19 38 chr11 143078234 143078340 -7705213 + L3 LINE CR1 1464 1567 -10 4208 292 121 32 chr11 143078460 143081004 -7702549 - L2 LINE L2 -7 3306 990 1173 191 17 17 chr11 143081004 143081040 -7702513 + L1MA6 LINE L1 5997 6032 -268 619 152 9 0 chr11 143081040 143081145 -7702408 + U6 snRNA snRNA 1 106 -1 1173 191 17 17 chr11 143081145 143081401 -7702152 + L1MA6 LINE L1 6031 6289 -11 4208 292 121 32 chr11 143081401 143081423 -7702130 - L2 LINE L2 -2323 990 971 2058 148 3 10 chr11 143081423 143081726 -7701827 + AluJb SINE Alu 1 301 -11 4208 292 121 32 chr11 143081726 143081889 -7701664 - L2 LINE L2 -2342 971 322 494 209 101 16 chr11 143082225 143082386 -7701167 - MIR3 SINE MIR 0 208 44 28 29 0 0 chr11 143083461 143083496 -7700057 + AT_rich Low_complexity Low_complexity 1 35 0 201 74 0 0 chr11 143083581 143083608 -7699945 + (T)n Simple_repeat Simple_repeat 1 27 0 328 152 258 96 chr11 143084955 143085133 -7698420 + MIR SINE MIR 46 252 -10 485 326 47 9 chr11 143085677 143085910 -7697643 + MIR SINE MIR 21 262 0 889 183 37 0 chr11 143085929 143086093 -7697460 - MER5A DNA MER1_type -19 170 1 746 200 54 39 chr11 143086210 143086358 -7697195 + MER3 DNA MER1_type 2 146 -63 2078 139 0 0 chr11 143086358 143086646 -7696907 + AluSx SINE Alu 1 288 -24 279 0 0 0 chr11 143086655 143086686 -7696867 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 746 200 54 39 chr11 143086686 143086732 -7696821 + MER3 DNA MER1_type 153 209 0 706 275 39 21 chr11 143087439 143087672 -7695881 + MIR SINE MIR 5 241 -21 328 152 61 71 chr11 143088975 143089074 -7694479 + MIR SINE MIR 117 214 -48 1758 179 52 0 chr11 143089148 143089477 -7694076 - MER63 DNA MER1_type 0 1060 715 274 150 0 0 chr11 143089480 143089520 -7694033 - MER63 DNA MER1_type -890 40 1 685 277 17 11 chr11 143090597 143090774 -7692779 - MIR SINE MIR -84 178 1 672 218 29 6 chr11 143091729 143091899 -7691654 + MER5B DNA MER1_type 5 178 0 281 260 19 48 chr11 143092221 143092325 -7691228 + MER5A DNA MER1_type 9 109 -80 203 250 60 71 chr11 143092457 143092541 -7691012 + L2 LINE L2 3162 3244 -28 523 258 82 94 chr11 143094146 143094476 -7689077 - L2 LINE L2 0 3272 2947 195 205 0 0 chr11 143094659 143094698 -7688855 + MIR SINE MIR 110 148 -60 285 323 56 41 chr11 143095277 143095472 -7688081 + MIR3 SINE MIR 5 202 -6 374 277 77 15 chr11 143095560 143095690 -7687863 + MIR SINE MIR 33 170 -92 503 252 116 13 chr11 143095714 143095869 -7687684 + L2 LINE L2 3143 3313 0 2258 197 16 4 chr11 143096266 143096759 -7686794 + L1MB4 LINE L1 5676 6174 -6 225 65 0 0 chr11 143097855 143097886 -7685667 + (CA)n Simple_repeat Simple_repeat 2 32 0 462 161 0 0 chr11 143098463 143098575 -7684978 + (CA)n Simple_repeat Simple_repeat 2 113 0 227 354 71 22 chr11 143099359 143099538 -7684015 + MIR SINE MIR 9 192 -57 216 355 0 0 chr11 143099691 143099767 -7683786 - L2 LINE L2 -553 2761 2686 221 341 128 12 chr11 143099882 143100140 -7683413 - L2 LINE L2 -828 2486 2199 270 292 0 0 chr11 143100151 143100216 -7683337 + (TG)n Simple_repeat Simple_repeat 1 65 0 1241 251 131 30 chr11 143100678 143101361 -7682192 + L2 LINE L2 2392 3188 -125 2294 118 0 0 chr11 143101361 143101666 -7681887 - AluSc SINE Alu -3 306 2 1241 251 131 30 chr11 143101666 143101804 -7681749 + L2 LINE L2 3188 3311 -2 344 259 130 8 chr11 143101811 143101942 -7681611 - MIR SINE MIR -6 256 110 452 309 73 66 chr11 143102033 143102305 -7681248 - L2 LINE L2 0 3272 2999 284 109 0 36 chr11 143103500 143103555 -7679998 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 2415 153 19 2 chr11 143103759 143104178 -7679375 - MSTB LTR MaLR 0 426 1 283 304 57 37 chr11 143104317 143104505 -7679048 + MIR SINE MIR 3 191 -62 907 249 100 0 chr11 143105135 143105364 -7678189 - MIR SINE MIR 0 262 11 534 146 0 0 chr11 143105397 143105507 -7678046 + (GA)n Simple_repeat Simple_repeat 2 111 0 219 266 89 70 chr11 143105733 143105891 -7677662 + MIR3 SINE MIR 6 166 -42 22 0 0 0 chr11 143106517 143106539 -7677014 + AT_rich Low_complexity Low_complexity 1 22 0 191 271 0 21 chr11 143106731 143106779 -7676774 - L2 LINE L2 0 3272 3226 199 293 52 26 chr11 143106944 143107060 -7676493 - L2 LINE L2 -209 3063 2945 375 267 66 42 chr11 143108071 143108267 -7675286 - MIR SINE MIR -56 206 2 188 318 15 30 chr11 143108370 143108436 -7675117 + L3 LINE CR1 1512 1576 -1 208 137 0 59 chr11 143110486 143110537 -7673016 + (TTTC)n Simple_repeat Simple_repeat 1 48 0 195 129 0 0 chr11 143111236 143111267 -7672286 + (TGGA)n Simple_repeat Simple_repeat 2 32 0 1884 119 75 17 chr11 143111357 143111650 -7671903 + AluSq SINE Alu 3 312 -1 223 350 19 10 chr11 143111876 143111979 -7671574 - L2 LINE L2 -94 3219 3116 652 272 256 25 chr11 143112697 143113182 -7670371 - L3 LINE CR1 -7 1570 974 285 29 0 0 chr11 143113184 143113218 -7670335 + (TTTC)n Simple_repeat Simple_repeat 1 34 0 399 369 68 33 chr11 143113343 143113437 -7670116 - L3 LINE CR1 -1199 378 289 2428 95 0 0 chr11 143113437 143113743 -7669810 + AluSg SINE Alu 1 306 -4 399 369 68 33 chr11 143113743 143113984 -7669569 - L3 LINE CR1 -1288 289 31 241 308 140 28 chr11 143114543 143114686 -7668867 - L2 LINE L2 -13 3259 3101 21 36 0 0 chr11 143115054 143115082 -7668471 + AT_rich Low_complexity Low_complexity 1 28 0 627 121 30 0 chr11 143115144 143115243 -7668310 + AluSg/x SINE Alu 196 297 -12 413 239 78 42 chr11 143115243 143115385 -7668168 + MIR SINE MIR 46 192 -70 271 356 52 7 chr11 143116033 143116168 -7667385 - L2 LINE L2 -208 3064 2924 180 297 94 16 chr11 143116618 143116682 -7666871 + L2 LINE L2 3141 3209 -63 236 325 0 0 chr11 143116801 143116884 -7666669 + MIR SINE MIR 3 85 -177 753 186 77 22 chr11 143116938 143117121 -7666432 - MER3 DNA MER1_type -16 193 1 253 290 47 19 chr11 143117142 143117249 -7666304 + MIR SINE MIR 153 262 0 219 36 0 0 chr11 143117944 143117972 -7665581 + (CCCTG)n Simple_repeat Simple_repeat 3 30 0 216 0 0 0 chr11 143118527 143118551 -7665002 + (A)n Simple_repeat Simple_repeat 1 24 0 1904 145 0 14 chr11 143119323 143119605 -7663948 + AluJb SINE Alu 2 279 -33 25 0 0 0 chr11 143119640 143119665 -7663888 + AT_rich Low_complexity Low_complexity 1 25 0 2474 77 3 0 chr11 143119668 143119965 -7663588 + AluY SINE Alu 1 298 -13 321 200 0 0 chr11 143120775 143120840 -7662713 + L3 LINE CR1 1164 1228 -349 447 300 35 18 chr11 143120862 143121032 -7662521 + MIR SINE MIR 2 174 -88 264 226 0 0 chr11 143122465 143122527 -7661026 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 721 222 123 0 chr11 143122529 143122700 -7660853 - MIR SINE MIR -58 204 13 373 351 7 26 chr11 143122966 143123117 -7660436 - L2 LINE L2 -1 3271 3124 380 230 134 82 chr11 143123330 143123659 -7659894 + L1ME3 LINE L1 5778 6126 -40 310 187 13 27 chr11 143123763 143123838 -7659715 + HsTC2 DNA Tc2 14 87 -1811 242 293 70 51 chr11 143124546 143124703 -7658850 - MIR SINE MIR -54 208 49 203 265 1 9 chr11 143124780 143124860 -7658693 + CT-rich Low_complexity Low_complexity 1 61 0 245 304 76 0 chr11 143125556 143125635 -7657918 + L3b LINE CR1 1419 1503 -80 268 337 103 47 chr11 143126024 143126324 -7657229 - L2 LINE L2 -47 3225 2909 192 315 19 0 chr11 143126902 143126956 -7656597 - MIR SINE MIR -154 108 54 190 250 259 9 chr11 143127374 143127482 -7656071 - L2 LINE L2 -1 3271 3137 180 267 0 133 chr11 143127660 143127750 -7655803 + MIR SINE MIR 120 197 -65 203 288 14 41 chr11 143127816 143127889 -7655664 + L2 LINE L2 3238 3308 -5 322 319 120 37 chr11 143130062 143130253 -7653300 + MIR SINE MIR 20 226 -36 215 369 0 0 chr11 143130324 143130389 -7653164 - L3 LINE CR1 -103 1474 1410 246 164 0 0 chr11 143130569 143130624 -7652929 + GA-rich Low_complexity Low_complexity 2 56 0 494 248 8 0 chr11 143133581 143133706 -7649847 - MER103 DNA DNA -3 163 38 2386 89 3 25 chr11 143133905 143134221 -7649332 - AluSp SINE Alu -4 309 1 1624 184 0 34 chr11 143134235 143134551 -7649002 - AluSx SINE Alu 0 306 1 394 303 41 0 chr11 143134955 143135077 -7648476 - L2 LINE L2 0 3313 3187 625 176 9 0 chr11 143135092 143135200 -7648353 + FLAM_C SINE Alu 2 110 -33 593 230 42 30 chr11 143135440 143135605 -7647948 + Charlie8 DNA MER1_type 77 243 -2174 2097 110 0 0 chr11 143135877 143136149 -7647404 + AluSg SINE Alu 39 310 0 244 243 72 54 chr11 143136151 143136262 -7647291 + Charlie8 DNA MER1_type 394 506 -1911 2221 114 26 10 chr11 143136464 143136770 -7646783 + AluSx SINE Alu 1 311 -1 192 314 43 0 chr11 143137720 143137790 -7645763 + MIR3 SINE MIR 125 197 -11 290 368 35 0 chr11 143138084 143138228 -7645325 + MER5B DNA MER1_type 1 149 -29 1934 145 0 47 chr11 143138457 143138774 -7644779 + AluJb SINE Alu 1 302 -10 268 246 0 0 chr11 143138851 143138920 -7644633 - L3 LINE CR1 -228 1349 1281 2126 120 3 29 chr11 143139373 143139682 -7643871 + AluSq SINE Alu 1 301 -12 397 242 76 30 chr11 143139925 143140057 -7643496 - MIR SINE MIR -105 157 20 2459 94 0 3 chr11 143142016 143142323 -7641230 - AluSx SINE Alu -6 306 1 500 237 0 0 chr11 143142865 143142962 -7640591 - MER5A DNA MER1_type -83 106 10 2216 109 3 0 chr11 143143591 143143884 -7639669 + AluSp SINE Alu 1 294 -19 482 263 110 20 chr11 143144047 143144249 -7639304 + MIR SINE MIR 32 252 -10 490 286 81 12 chr11 143145566 143145727 -7637826 + MIR SINE MIR 11 182 -80 212 0 36 0 chr11 143145930 143145958 -7637595 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1336 140 23 9 chr11 143145964 143146178 -7637375 - AluJo SINE Alu -11 301 85 183 339 0 0 chr11 143146180 143146245 -7637308 - L3b LINE CR1 -202 1381 1317 1768 226 42 67 chr11 143146344 143146827 -7636726 + L1MC5 LINE L1 7186 7646 -315 2440 105 0 0 chr11 143146827 143147132 -7636421 + AluSx SINE Alu 1 305 -7 1768 226 42 67 chr11 143147132 143147382 -7636171 + L1MC5 LINE L1 7646 7901 -60 400 150 0 75 chr11 143148025 143148105 -7635448 + L1PA16 LINE L1 6012 6085 -81 616 192 8 17 chr11 143148105 143148225 -7635328 + AluJb SINE Alu 64 182 -130 248 83 0 0 chr11 143148225 143148261 -7635292 + L1PA16 LINE L1 6092 6127 -39 1736 149 0 21 chr11 143148325 143148607 -7634946 - AluJo SINE Alu -9 303 28 401 145 0 0 chr11 143148607 143148669 -7634884 + Alu SINE Alu 237 298 -4 305 132 0 0 chr11 143148666 143148759 -7634794 + FLAM_A SINE Alu 81 173 0 * 403 251 62 17 chr11 143148813 143148992 -7634561 + L1ME4a LINE L1 5933 6119 -2 2531 67 0 7 chr11 143149317 143149617 -7633936 - AluSq SINE Alu -15 298 1 346 241 190 78 chr11 143150024 143150256 -7633297 + L1ME4a LINE L1 5862 6119 -2 2496 77 3 0 chr11 143152247 143152546 -7631007 - AluSx SINE Alu -12 300 1 383 327 19 26 chr11 143152557 143152713 -7630840 + MIR3 SINE MIR 54 208 0 366 333 58 7 chr11 143152794 143152932 -7630621 + L2 LINE L2 3121 3265 -7 180 0 0 0 chr11 143153218 143153238 -7630315 + (A)n Simple_repeat Simple_repeat 1 20 0 259 315 0 22 chr11 143153925 143154017 -7629536 - MER5B DNA MER1_type -85 93 4 2445 97 0 0 chr11 143154022 143154330 -7629223 + AluSg SINE Alu 1 308 -2 2204 131 0 0 chr11 143154397 143154703 -7628850 + AluSx SINE Alu 1 306 -6 376 164 164 103 chr11 143156073 143156191 -7627362 - L1ME4a LINE L1 -121 6000 5867 1943 156 3 0 chr11 143156191 143156507 -7627046 + AluSq SINE Alu 1 317 0 376 164 164 103 chr11 143156507 143156552 -7627001 - L1ME4a LINE L1 -254 5867 5826 956 105 15 15 chr11 143156570 143156703 -7626850 + AluSq/x SINE Alu 1 133 -180 417 286 0 0 chr11 143156706 143156797 -7626756 + L1MC4 LINE L1 6613 6703 -1339 408 245 0 43 chr11 143156721 143156815 -7626738 - L1MC4 LINE L1 -1339 6703 6614 * 22 35 0 0 chr11 143156833 143156862 -7626691 + AT_rich Low_complexity Low_complexity 1 29 0 1202 116 0 0 chr11 143156952 143157133 -7626420 - L1MA2 LINE L1 0 6304 6124 253 292 15 0 chr11 143157756 143157821 -7625732 + MIR SINE MIR 17 82 -180 537 229 67 113 chr11 143157832 143158106 -7625447 + MER67C LTR ERV1 3 259 -451 2370 107 3 0 chr11 143158106 143158415 -7625138 + AluSg SINE Alu 1 310 0 537 229 67 113 chr11 143158415 143158485 -7625068 + MER67C LTR ERV1 259 331 -379 881 174 9 113 chr11 143158492 143158629 -7624924 + MER67C LTR ERV1 505 610 -100 2236 127 0 0 chr11 143158629 143158936 -7624617 + AluSx SINE Alu 1 307 -5 881 174 9 113 chr11 143158936 143159028 -7624525 + MER67C LTR ERV1 610 710 0 281 247 179 80 chr11 143159028 143159134 -7624419 + MIR SINE MIR 85 214 -48 2088 125 3 13 chr11 143159134 143159437 -7624116 + AluSx SINE Alu 1 300 -12 281 247 179 80 chr11 143159437 143159492 -7624061 + MIR SINE MIR 214 262 0 1891 169 0 0 chr11 143160644 143160946 -7622607 + AluJb SINE Alu 1 302 -10 191 244 22 0 chr11 143161543 143161588 -7621965 + L2 LINE L2 3263 3308 -5 1951 152 0 3 chr11 143162047 143162337 -7621216 + AluJb SINE Alu 12 300 -12 2150 119 0 55 chr11 143162337 143162664 -7620889 + AluSx SINE Alu 1 309 -3 1867 144 10 37 chr11 143165519 143165817 -7617736 + AluJb SINE Alu 3 292 -20 1830 127 17 37 chr11 143166355 143166655 -7616898 - AluJo SINE Alu -16 296 3 1678 155 50 14 chr11 143166886 143167163 -7616390 + AluJb SINE Alu 1 287 -25 1385 215 0 39 chr11 143167496 143167807 -7615746 - AluJo SINE Alu -13 299 1 683 284 134 37 chr11 143167896 143168464 -7615089 + HAL1 LINE L1 47 669 -1838 1634 183 11 3 chr11 143168585 143168869 -7614684 - AluJb SINE Alu -18 294 9 1628 133 3 70 chr11 143168875 143169177 -7614376 - AluJo SINE Alu -11 301 20 620 201 67 8 chr11 143169198 143169332 -7614221 - FLAM_C SINE Alu 0 143 2 540 273 62 117 chr11 143169339 143169819 -7613734 + HAL1 LINE L1 816 1269 -1238 558 266 13 7 chr11 143169822 143169976 -7613577 + L1MEc LINE L1 44 198 -6198 * 4734 246 87 27 chr11 143169961 143170750 -7612803 + L1MEc LINE L1 1633 2373 -3842 288 0 0 0 chr11 143170750 143170782 -7612771 + (CA)n Simple_repeat Simple_repeat 2 33 0 4734 246 87 27 chr11 143170782 143172225 -7611328 + L1MEc LINE L1 2373 3947 -2268 1111 241 16 60 chr11 143172211 143172676 -7610877 + L1MEc LINE L1 4606 5021 -1194 * 499 214 0 0 chr11 143172683 143172781 -7610772 + FLAM_A SINE Alu 1 98 -44 902 185 13 57 chr11 143172804 143172855 -7610698 + L1MEc LINE L1 5012 5064 -1151 2150 146 0 0 chr11 143172855 143173164 -7610389 + AluSx SINE Alu 1 309 -3 902 185 13 57 chr11 143173164 143173339 -7610214 + L1MEc LINE L1 5064 5228 -987 2232 102 0 0 chr11 143173339 143173632 -7609921 - AluSx SINE Alu -8 304 12 2068 138 5 60 chr11 143173667 143173948 -7609605 - L1MB3 LINE L1 0 6183 5929 2453 72 0 0 chr11 143173948 143174240 -7609313 + AluY SINE Alu 1 292 -19 2068 138 5 60 chr11 143174240 143174356 -7609197 - L1MB3 LINE L1 -254 5929 5808 4376 196 28 45 chr11 143174359 143175226 -7608327 + MER21B LTR ERV1 1 852 -11 1722 185 3 13 chr11 143175267 143175580 -7607973 + AluJo SINE Alu 1 310 -2 2832 153 40 46 chr11 143175602 143176283 -7607270 - L1MB3 LINE L1 -373 5807 5134 1381 83 10 21 chr11 143176285 143176477 -7607076 - AluY SINE Alu -17 294 105 1631 210 13 16 chr11 143176479 143176630 -7606923 - L1MB3 LINE L1 -1007 5139 4989 1324 208 38 0 chr11 143176630 143176802 -7606751 - AluJb SINE Alu -12 300 111 405 0 0 0 chr11 143176802 143176847 -7606706 + (TG)n Simple_repeat Simple_repeat 1 45 0 1324 208 38 0 chr11 143176847 143176963 -7606590 - AluJb SINE Alu -201 111 1 1631 210 13 16 chr11 143176963 143177183 -7606370 - L1MB3 LINE L1 -1157 4989 4769 465 103 0 0 chr11 143177192 143177260 -7606293 - Alu SINE Alu -10 302 235 1217 63 0 0 chr11 143177260 143177402 -7606151 - AluSq/x SINE Alu -170 142 1 2015 107 20 34 chr11 143177405 143177568 -7605985 - AluSx SINE Alu -18 294 135 297 0 0 0 chr11 143177568 143177601 -7605952 + (TG)n Simple_repeat Simple_repeat 2 34 0 2015 107 20 34 chr11 143177601 143177735 -7605818 - AluSx SINE Alu -177 135 1 345 285 65 16 chr11 143177764 143177887 -7605666 - MIR SINE MIR -122 140 12 36 0 0 0 chr11 143177982 143178018 -7605535 + AT_rich Low_complexity Low_complexity 1 36 0 2159 105 0 24 chr11 143178053 143178347 -7605206 - AluSx SINE Alu -25 287 1 425 250 18 9 chr11 143178676 143178788 -7604765 + Charlie8 DNA MER1_type 83 195 -2222 264 234 94 16 chr11 143178901 143179029 -7604524 + L1ME3A LINE L1 5803 5940 -230 1499 212 55 22 chr11 143179263 143179720 -7603833 - L1MEc LINE L1 -5328 1068 597 246 156 0 0 chr11 143179752 143179797 -7603756 + (TA)n Simple_repeat Simple_repeat 2 46 0 1603 201 4 0 chr11 143179797 143180076 -7603477 + AluJb SINE Alu 2 281 -31 1900 243 58 18 chr11 143180112 143180626 -7602927 - L1MEc LINE L1 -5824 572 38 252 261 126 27 chr11 143180633 143180744 -7602809 - MIR SINE MIR -60 202 81 249 340 9 9 chr11 143180931 143181037 -7602516 - MER5A DNA MER1_type -34 155 50 184 271 139 23 chr11 143181081 143181210 -7602343 + L2 LINE L2 1564 1707 -1607 4157 142 17 36 chr11 143181218 143181985 -7601568 + MER4D LTR ERV1 4 616 -163 1097 77 69 81 chr11 143182020 143182226 -7601327 + MER4B-int LTR ERV1 1718 1922 -4836 2423 83 0 13 chr11 143182226 143182527 -7601026 - AluY SINE Alu -13 298 2 1097 77 69 81 chr11 143182527 143182566 -7600987 + MER4B-int LTR ERV1 1922 1960 -4798 43968 30 21 2 chr11 143182570 143188601 -7594952 + L1HS LINE L1 3 6155 0 3694 116 78 8 chr11 143188615 143189308 -7594245 + MER4B-int LTR ERV1 1968 2694 -2823 2359 137 22 51 chr11 143189308 143189723 -7593830 + MER57A LTR ERV1 1 403 0 12943 163 40 38 chr11 143189723 143190224 -7593329 + MER57A-int LTR ERV1 1 499 -5764 1804 168 0 19 chr11 143190224 143190565 -7592988 - AluSx SINE Alu 0 312 4 12943 163 40 38 chr11 143190565 143190821 -7592732 + MER57A-int LTR ERV1 499 753 -5510 2123 133 7 0 chr11 143190821 143191123 -7592430 + AluSx SINE Alu 1 304 -8 12943 163 40 38 chr11 143191123 143193160 -7590393 + MER57A-int LTR ERV1 753 2388 -3875 1650 139 15 40 chr11 143193160 143193378 -7590175 + MER57A-int LTR ERV1 3012 3223 -4314 1944 172 0 3 chr11 143193378 143193686 -7589867 + AluSx SINE Alu 1 307 -5 1650 139 15 40 chr11 143193686 143193741 -7589812 + MER57A-int LTR ERV1 3223 3278 -4259 1303 218 23 0 chr11 143193741 143194007 -7589546 - MER50 LTR ERV1 0 734 463 378 136 0 161 chr11 143194007 143194088 -7589465 - LTR9 LTR ERV1 0 612 545 20650 97 9 24 chr11 143194088 143194657 -7588896 - HUERS-P3b LTR ERV1 -1388 6030 5454 2277 110 3 0 chr11 143194657 143194956 -7588597 + AluSp SINE Alu 1 300 -13 20650 97 9 24 chr11 143194956 143196241 -7587312 - HUERS-P3b LTR ERV1 -1964 5454 4233 2276 118 0 3 chr11 143196241 143196554 -7586999 - AluSx SINE Alu 0 312 1 20650 97 9 24 chr11 143196554 143197699 -7585854 - HUERS-P3b LTR ERV1 -3185 4233 3073 2453 189 30 2 chr11 143197699 143198128 -7585425 + LTR8 LTR ERV1 1 441 -250 6278 97 18 13 chr11 143198128 143199276 -7584277 - HUERS-P3b LTR ERV1 -4776 2642 1769 * 10068 139 21 44 chr11 143199273 143200695 -7582858 - HUERS-P3b LTR ERV1 -7267 1652 274 2263 101 7 3 chr11 143200695 143200993 -7582560 + AluSx SINE Alu 1 299 -13 10068 139 21 44 chr11 143200993 143201257 -7582296 - HUERS-P3b LTR ERV1 -8645 274 5 3757 143 79 2 chr11 143201262 143201830 -7581723 - LTR9 LTR ERV1 0 612 1 1573 211 48 46 chr11 143201858 143201960 -7581593 - MER50 LTR ERV1 -298 436 336 2114 100 41 3 chr11 143201960 143202250 -7581303 + AluSc SINE Alu 1 301 -8 1573 211 48 46 chr11 143202250 143202582 -7580971 - MER50 LTR ERV1 -398 336 1 27041 93 47 59 chr11 143202583 143203662 -7579891 + MER57A-int LTR ERV1 3276 4367 -3170 2463 57 0 20 chr11 143203662 143203963 -7579590 + AluY SINE Alu 1 295 -16 27041 93 47 59 chr11 143203963 143204441 -7579112 + MER57A-int LTR ERV1 4367 4850 -2687 2192 112 3 0 chr11 143204441 143204737 -7578816 - AluSp SINE Alu -16 297 1 27041 93 47 59 chr11 143204737 143204766 -7578787 + MER57A-int LTR ERV1 4850 4878 -2659 2110 123 0 0 chr11 143204766 143205051 -7578502 + AluSg SINE Alu 1 285 -25 27041 93 47 59 chr11 143205051 143205256 -7578297 + MER57A-int LTR ERV1 4878 5084 -2453 1999 146 3 0 chr11 143205256 143205544 -7578009 + AluSx SINE Alu 3 291 -21 27041 93 47 59 chr11 143205544 143206270 -7577283 + MER57A-int LTR ERV1 5084 5818 -1719 1948 124 10 49 chr11 143206270 143206577 -7576976 - AluSx SINE Alu -17 295 1 27041 93 47 59 chr11 143206577 143208389 -7575164 + MER57A-int LTR ERV1 5818 7537 0 2488 142 16 0 chr11 143208424 143208812 -7574741 + MER57A LTR ERV1 10 403 0 1918 156 45 20 chr11 143208812 143209209 -7574344 + MER4B-int LTR ERV1 2691 3097 -3661 2433 71 0 0 chr11 143209212 143209508 -7574045 + AluY SINE Alu 3 298 -13 3999 134 28 30 chr11 143209512 143209617 -7573936 + MER4B-int LTR ERV1 3431 3535 -3223 2353 100 0 0 chr11 143209617 143209917 -7573636 + AluSg SINE Alu 1 300 -10 3999 134 28 30 chr11 143209917 143210452 -7573101 + MER4B-int LTR ERV1 3535 4070 -2688 558 161 0 0 chr11 143210453 143210540 -7573013 + AluS SINE Alu 2 88 -224 4577 108 64 37 chr11 143210541 143211263 -7572290 - MER4B-int LTR ERV1 -1566 5192 4452 2202 101 0 0 chr11 143211291 143211587 -7571966 - AluSx SINE Alu -6 306 11 180 111 0 0 chr11 143211610 143211637 -7571916 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 880 145 0 0 chr11 143211841 143211972 -7571581 + AluJb SINE Alu 167 297 -15 3076 166 70 11 chr11 143212116 143212582 -7570971 - LTR28 LTR ERV1 0 1020 583 2237 112 0 3 chr11 143212582 143212895 -7570658 + AluSx SINE Alu 1 312 0 3076 166 70 11 chr11 143212895 143213352 -7570201 - LTR28 LTR ERV1 -437 583 1 1940 60 0 0 chr11 143213464 143213699 -7569854 + AluY SINE Alu 1 235 -76 234 0 0 0 chr11 143213715 143213741 -7569812 + (A)n Simple_repeat Simple_repeat 1 26 0 2829 116 56 17 chr11 143213905 143213927 -7569626 - MER31A LTR ERV1 -2 483 463 2510 54 0 6 chr11 143213927 143214240 -7569313 - AluY SINE Alu 0 311 1 2829 116 56 17 chr11 143214240 143214682 -7568871 - MER31A LTR ERV1 -22 463 1 832 149 0 47 chr11 143215644 143215792 -7567761 - FLAM_C SINE Alu -1 142 2 182 161 0 54 chr11 143215848 143215904 -7567649 + C-rich Low_complexity Low_complexity 1 53 0 709 185 8 0 chr11 143215935 143216054 -7567499 - FAM SINE Alu -23 162 43 235 315 136 37 chr11 143216658 143216820 -7566733 + L3 LINE CR1 1399 1576 -1 207 0 0 0 chr11 143216947 143216970 -7566583 + (TG)n Simple_repeat Simple_repeat 2 24 0 688 167 0 0 chr11 143217012 143217132 -7566421 - FLAM_C SINE Alu 0 143 24 2429 65 0 0 chr11 143217311 143217619 -7565934 - AluY SINE Alu -3 308 1 197 211 0 0 chr11 143217683 143217721 -7565832 - L2 LINE L2 -1 3271 3234 1614 173 0 17 chr11 143217824 143218139 -7565414 - AluSx SINE Alu 0 310 1 1604 164 0 24 chr11 143218144 143218442 -7565111 - AluJb SINE Alu -21 291 1 188 270 0 0 chr11 143218573 143218610 -7564943 - MIR SINE MIR -4 258 222 * 190 309 0 0 chr11 143218579 143218621 -7564932 - L2 LINE L2 -16 3256 3215 233 301 82 0 chr11 143218630 143218703 -7564850 + L2 LINE L2 3227 3305 -8 627 213 81 0 chr11 143218759 143218919 -7564634 - MLT1C LTR MaLR -294 173 1 1896 169 22 214 chr11 143218920 143219025 -7564528 - MLT1C-int LTR MaLR -1 1370 1247 1976 129 0 7 chr11 143219025 143219320 -7564233 - AluSx SINE Alu -19 293 1 1896 169 22 214 chr11 143219320 143219583 -7563970 - MLT1C-int LTR MaLR -124 1247 1206 873 148 0 15 chr11 143219583 143219718 -7563835 + FLAM_C SINE Alu 1 133 0 1896 169 22 214 chr11 143219718 143220072 -7563481 - MLT1C-int LTR MaLR -165 1206 786 2704 173 34 0 chr11 143220108 143220606 -7562947 - MLT1C-int LTR MaLR -855 516 2 1509 203 165 10 chr11 143220607 143220858 -7562695 - MLT1C LTR MaLR 0 467 256 1701 139 27 30 chr11 143220858 143221159 -7562394 - AluSx SINE Alu -12 300 1 1509 203 165 10 chr11 143221159 143221307 -7562246 - MLT1C LTR MaLR -211 256 6 229 94 0 0 chr11 143221434 143221466 -7562087 + L1MB4 LINE L1 5683 5714 -469 2909 121 17 2 chr11 143221505 143221975 -7561578 + L1MB4 LINE L1 5702 6178 -2 654 154 40 124 chr11 143222081 143222282 -7561271 - MIR SINE MIR 0 262 79 339 229 4 48 chr11 143222394 143222507 -7561046 - L1MCa LINE L1 -1339 6983 1996 277 194 31 71 chr11 143222799 143222897 -7560656 + L1MC4 LINE L1 6615 6708 -1334 551 152 41 103 chr11 143222911 143222976 -7560577 - MIR SINE MIR -50 212 145 2323 54 24 0 chr11 143222976 143223272 -7560281 - AluY SINE Alu -7 304 2 551 152 41 103 chr11 143223272 143223351 -7560202 - MIR SINE MIR -117 145 77 1316 129 103 55 chr11 143223404 143223699 -7559854 - AluJb SINE Alu 0 308 1 1851 147 0 32 chr11 143224754 143225067 -7558486 - AluJb SINE Alu -4 308 6 926 133 61 47 chr11 143225073 143225272 -7558281 + LTR48 LTR ERV1 400 787 0 1052 177 10 5 chr11 143225272 143225470 -7558083 + L1MB7 LINE L1 5738 5936 -248 535 129 276 0 chr11 143225494 143225610 -7557943 - MER4C LTR ERV1 -18 447 300 532 207 164 108 chr11 143225671 143225995 -7557558 - MER4A LTR ERV1 -322 342 1 825 87 52 240 chr11 143225995 143226223 -7557330 + L1MB7 LINE L1 5951 6220 36 2290 93 3 0 chr11 143226223 143226524 -7557029 + AluSp SINE Alu 1 302 -11 1438 193 16 39 chr11 143226528 143226834 -7556719 + AluJo SINE Alu 1 299 -13 825 87 52 240 chr11 143226834 143226888 -7556665 + L1MB7 LINE L1 6122 6184 0 584 269 44 62 chr11 143227002 143227229 -7556324 - MIR SINE MIR -12 250 28 2210 78 3 3 chr11 143227274 143227569 -7555984 + AluSx SINE Alu 1 295 -17 2186 99 0 7 chr11 143229280 143229606 -7553947 + AluSq SINE Alu 1 313 0 1874 161 0 10 chr11 143229787 143230086 -7553467 + AluJb SINE Alu 1 296 -16 1557 156 33 13 chr11 143230086 143230393 -7553160 + L1MB8 LINE L1 5583 5895 -289 341 229 55 115 chr11 143230413 143230596 -7552957 - LTR28 LTR ERV1 -1 1019 848 371 215 19 56 chr11 143230614 143230721 -7552832 - LTR1B LTR ERV1 -318 508 406 444 237 147 19 chr11 143230807 143230963 -7552590 - LTR1 LTR ERV1 -568 217 42 2265 174 109 98 chr11 143231001 143231718 -7551835 + LTR8A LTR ERV1 1 725 -2 434 184 66 66 chr11 143231720 143231760 -7551793 + L1MB8 LINE L1 5928 5967 -211 1408 219 7 7 chr11 143231760 143232066 -7551487 + AluJo SINE Alu 1 306 -6 434 184 66 66 chr11 143232066 143232161 -7551392 + L1MB8 LINE L1 5966 6063 -115 370 194 0 0 chr11 143232202 143232269 -7551284 + L1MB7 LINE L1 6058 6124 -60 703 189 45 0 chr11 143232271 143232403 -7551150 - FLAM_C SINE Alu -4 139 2 364 127 0 42 chr11 143232404 143232475 -7551078 + L1MB8 LINE L1 6110 6177 -1 203 217 83 0 chr11 143232789 143232849 -7550704 + MIR SINE MIR 90 154 -108 1967 118 3 23 chr11 143232863 143233167 -7550386 + AluSx SINE Alu 2 299 -13 394 279 0 0 chr11 143233274 143233353 -7550200 + MER21B LTR ERV1 18 96 -767 1293 173 45 11 chr11 143233421 143233593 -7549960 - LTR54 LTR ERV1 0 510 345 1887 122 0 17 chr11 143233593 143233889 -7549664 + AluSc SINE Alu 1 291 -18 2058 106 0 13 chr11 143233890 143234193 -7549360 + AluY SINE Alu 1 299 -12 1293 173 45 11 chr11 143234193 143234322 -7549231 - LTR54 LTR ERV1 -164 346 238 2224 93 3 0 chr11 143234322 143234666 -7548887 + AluSp SINE Alu 1 345 0 27 0 0 0 chr11 143234749 143234776 -7548777 + AT_rich Low_complexity Low_complexity 1 27 0 689 249 92 11 chr11 143234776 143234961 -7548592 - LTR54 LTR ERV1 -310 200 1 477 183 167 16 chr11 143235396 143235522 -7548031 + MER110A LTR ERV1 57 201 -267 680 152 0 0 chr11 143235564 143235676 -7547877 + L1MB8 LINE L1 5799 5910 -268 674 191 0 24 chr11 143235676 143235802 -7547751 + FLAM_A SINE Alu 6 128 -14 2170 115 0 6 chr11 143235806 143236119 -7547434 + AluSq SINE Alu 1 311 -2 921 146 14 59 chr11 143236119 143236338 -7547215 + L1MB8 LINE L1 5964 6172 -6 2136 102 31 0 chr11 143236370 143236664 -7546889 + AluSx SINE Alu 1 303 -9 1021 152 145 109 chr11 143236715 143236750 -7546803 + LTR48 LTR ERV1 4 36 -751 1881 141 61 28 chr11 143236750 143237113 -7546440 + THE1C LTR MaLR 1 375 0 1021 152 145 109 chr11 143237113 143237258 -7546295 + LTR48 LTR ERV1 36 200 -587 1858 155 3 3 chr11 143237258 143237562 -7545991 - AluSx SINE Alu -8 304 1 1021 152 145 109 chr11 143237562 143237663 -7545890 + LTR48 LTR ERV1 200 296 -491 * 1975 130 117 5 chr11 143237657 143238025 -7545528 + LTR48 LTR ERV1 201 609 -178 625 200 37 22 chr11 143238031 143238046 -7545507 - FLAM_A SINE Alu -169 142 129 895 88 96 7 chr11 143238046 143238182 -7545371 - L1PA10 LINE L1 0 6168 6021 625 200 37 22 chr11 143238182 143238301 -7545252 - FLAM_A SINE Alu -182 129 6 916 114 87 33 chr11 143238302 143238486 -7545067 + LTR48 LTR ERV1 594 787 0 361 232 20 10 chr11 143238486 143238571 -7544982 + MER110A LTR ERV1 282 367 -101 411 250 41 12 chr11 143238603 143238739 -7544814 + MER110A LTR ERV1 340 468 0 212 26 0 79 chr11 143238748 143238786 -7544767 + (T)n Simple_repeat Simple_repeat 1 35 0 225 0 0 0 chr11 143239427 143239452 -7544101 + (A)n Simple_repeat Simple_repeat 1 25 0 237 293 132 9 chr11 143240030 143240136 -7543417 - L2 LINE L2 -10 3303 3185 15682 116 38 10 chr11 143240616 143242227 -7541326 - Tigger1 DNA MER2_type 0 2418 853 1977 123 0 44 chr11 143242227 143242544 -7541009 - AluSx SINE Alu -9 303 1 15682 116 38 10 chr11 143242544 143242827 -7540726 - Tigger1 DNA MER2_type -1565 853 579 1750 155 75 36 chr11 143242827 143243188 -7540365 + THE1C LTR MaLR 1 375 0 15682 116 38 10 chr11 143243188 143243645 -7539908 - Tigger1 DNA MER2_type -1839 579 1 499 302 163 33 chr11 143243661 143244213 -7539340 - L2 LINE L2 -52 3261 2648 426 305 0 0 chr11 143244984 143245115 -7538438 - MER94 DNA DNA -3 131 1 258 328 86 8 chr11 143245156 143245284 -7538269 - L2 LINE L2 -212 3060 2923 933 190 88 51 chr11 143245340 143245407 -7538146 - MER58A DNA MER1_type -2196 224 161 2232 115 33 0 chr11 143245407 143245738 -7537815 + MER2 DNA MER2_type 1 342 -2 933 190 88 51 chr11 143245738 143245864 -7537689 - MER58A DNA MER1_type -2259 161 20 1715 200 40 3 chr11 143245864 143246214 -7537339 - MLT1A1 LTR MaLR 0 365 3 933 190 88 51 chr11 143246214 143246235 -7537318 - MER58A DNA MER1_type -2400 20 1 273 241 66 109 chr11 143246908 143247045 -7536508 + MIR SINE MIR 72 202 -60 353 216 216 9 chr11 143247161 143247277 -7536276 - MIR3 SINE MIR -41 167 28 189 0 0 0 chr11 143247979 143248000 -7535553 + (TG)n Simple_repeat Simple_repeat 2 22 0 346 294 76 8 chr11 143248336 143248455 -7535098 + MIR SINE MIR 65 191 -71 216 308 46 0 chr11 143248546 143248611 -7534942 - L2 LINE L2 0 3272 3205 340 245 61 41 chr11 143249402 143249500 -7534053 - L2 LINE L2 -52 3220 3121 273 248 147 101 chr11 143249719 143249937 -7533616 - MIR SINE MIR -1 261 34 198 312 64 47 chr11 143250441 143250675 -7532878 - L2 LINE L2 -357 2957 2720 216 380 14 0 chr11 143252377 143252448 -7531105 + L2 LINE L2 3107 3178 -94 480 130 0 0 chr11 143252448 143252540 -7531013 + (GA)n Simple_repeat Simple_repeat 1 92 0 328 277 54 54 chr11 143252863 143252993 -7530560 + MIR SINE MIR 20 149 -113 777 264 104 21 chr11 143253004 143253379 -7530174 + L1ME4a LINE L1 5510 5915 -206 258 81 0 0 chr11 143254806 143254843 -7528710 + (CA)n Simple_repeat Simple_repeat 1 37 0 253 322 11 11 chr11 143256419 143256506 -7527047 - MER5A DNA MER1_type -37 152 66 393 22 0 0 chr11 143257659 143257705 -7525848 + (CA)n Simple_repeat Simple_repeat 2 47 0 664 283 20 86 chr11 143258619 143258711 -7524842 + MIR SINE MIR 29 125 -137 1771 166 0 16 chr11 143258711 143259025 -7524528 - AluJb SINE Alu -1 311 3 664 283 20 86 chr11 143259025 143259176 -7524377 + MIR SINE MIR 125 256 -6 384 277 8 31 chr11 143259481 143259611 -7523942 + MIR3 SINE MIR 82 208 0 1063 136 0 6 chr11 143259787 143259956 -7523597 + FRAM SINE Alu 1 160 -16 453 339 6 12 chr11 143260099 143260264 -7523289 - L1ME4a LINE L1 -190 5931 5768 297 143 125 0 chr11 143260479 143260535 -7523018 - HAL1b LINE L1 -451 897 835 227 198 40 57 chr11 143260614 143260791 -7522762 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 * 291 261 48 18 chr11 143260753 143260918 -7522635 + (TATAG)n Simple_repeat Simple_repeat 2 171 0 * 398 196 34 56 chr11 143260819 143260998 -7522555 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 227 248 35 35 chr11 143261011 143261152 -7522401 + (TTATA)n Simple_repeat Simple_repeat 4 144 0 393 309 176 19 chr11 143261417 143261883 -7521670 - HAL1 LINE L1 -738 1769 1231 256 167 0 0 chr11 143261883 143261925 -7521628 + L2 LINE L2 3213 3254 -18 304 303 202 0 chr11 143261944 143262063 -7521490 + MIR3 SINE MIR 44 186 -22 1905 240 81 14 chr11 143263906 143264414 -7519139 - Tigger8 DNA MER2_type -100 566 25 294 392 58 0 chr11 143264581 143264752 -7518801 + MIR SINE MIR 82 262 0 2289 99 0 0 chr11 143264893 143265196 -7518357 + AluSg SINE Alu 1 303 -7 2104 105 13 16 chr11 143265203 143265509 -7518044 + AluSc SINE Alu 1 305 -4 204 290 60 60 chr11 143270548 143270648 -7512905 - MIR SINE MIR -84 124 25 318 311 9 9 chr11 143270651 143270757 -7512796 - MIR3 SINE MIR -10 198 93 581 135 0 10 chr11 143270867 143270971 -7512582 + (GGAA)n Simple_repeat Simple_repeat 1 103 0 210 37 0 0 chr11 143271929 143271956 -7511597 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 360 0 0 0 chr11 143273961 143274001 -7509552 + (CA)n Simple_repeat Simple_repeat 1 40 0 192 280 0 0 chr11 143276404 143276454 -7507099 - L2 LINE L2 -8 3305 3256 2231 125 0 0 chr11 143279108 143279420 -7504133 + AluSx SINE Alu 1 312 0 348 237 127 42 chr11 143282010 143282128 -7501425 - L2 LINE L2 0 3272 3145 219 313 0 30 chr11 143282127 143282194 -7501359 + MIR SINE MIR 117 181 -81 * 1103 53 0 0 chr11 143284014 143284145 -7499408 - AluSp SINE Alu -180 133 3 1148 84 0 0 chr11 143284145 143284299 -7499254 + AluSp/q SINE Alu 159 312 -1 251 247 59 24 chr11 143284559 143284644 -7498909 - MIR SINE MIR -81 181 94 474 244 109 40 chr11 143284881 143285082 -7498471 - MIR SINE MIR 0 262 48 299 233 128 53 chr11 143285258 143285391 -7498162 - L2 LINE L2 -2 3311 3169 276 345 98 10 chr11 143285486 143285642 -7497911 - MIR SINE MIR -56 152 20 1192 48 0 0 chr11 143285686 143285833 -7497720 - L1PA5 LINE L1 -1 6153 6007 362 197 28 0 chr11 143286396 143286467 -7497086 + MIR SINE MIR 108 180 -82 1821 169 13 3 chr11 143286486 143286794 -7496759 - AluJo SINE Alu -1 311 1 323 161 18 0 chr11 143287286 143287342 -7496211 - AluS SINE Alu -246 57 1 364 265 128 1 chr11 143287457 143287607 -7495946 - MIR SINE MIR -48 160 15 888 216 9 72 chr11 143287933 143288155 -7495398 + MER63A DNA MER1_type 2 209 -1 185 320 60 20 chr11 143288838 143288938 -7494615 - MIR SINE MIR -12 250 147 1337 325 152 39 chr11 143288964 143290258 -7493295 - L3 LINE CR1 -17 1560 120 268 327 22 44 chr11 143290235 143290394 -7493159 - MIR SINE MIR -37 171 6 * 611 240 240 24 chr11 143290543 143290835 -7492718 - L2 LINE L2 0 3313 2959 468 331 6 6 chr11 143292505 143292683 -7490870 - MER5A DNA MER1_type -2 187 10 288 265 10 69 chr11 143293716 143293818 -7489735 - L2 LINE L2 -220 3052 2957 467 259 191 0 chr11 143294002 143294149 -7489404 + MER5A DNA MER1_type 1 175 -14 405 269 17 25 chr11 143296065 143296184 -7487369 + L2 LINE L2 3111 3228 -44 484 271 86 0 chr11 143296286 143296426 -7487127 + MER63 DNA MER1_type 4 781 -55 228 284 62 0 chr11 143297287 143297368 -7486185 + MIR SINE MIR 76 161 -101 611 272 56 15 chr11 143297516 143297711 -7485842 + MIR SINE MIR 60 262 0 276 282 47 0 chr11 143298878 143298963 -7484590 + MIR SINE MIR 162 250 -12 185 294 0 0 chr11 143298929 143298980 -7484573 + L2 LINE L2 3221 3271 -1 * 216 0 0 0 chr11 143299058 143299082 -7484471 + (GGGTG)n Simple_repeat Simple_repeat 4 27 0 256 332 93 14 chr11 143299577 143299770 -7483783 + MIR3 SINE MIR 10 223 -39 488 129 24 0 chr11 143299966 143300051 -7483502 - L1PA13 LINE L1 -1 6162 6076 367 333 34 7 chr11 143300818 143300965 -7482588 - L2 LINE L2 0 3272 3122 23 0 0 0 chr11 143300993 143301016 -7482537 + AT_rich Low_complexity Low_complexity 1 23 0 333 263 190 0 chr11 143301246 143301383 -7482170 - MIR SINE MIR -12 250 88 1452 92 12 96 chr11 143301772 143302023 -7481530 + MER30 DNA MER1_type 1 230 0 2251 102 0 6 chr11 143303171 143303485 -7480068 - AluSx SINE Alu 0 312 1 678 298 58 0 chr11 143305813 143306055 -7477498 + L2 LINE L2 2807 3062 -251 222 191 0 0 chr11 143306426 143306473 -7477080 + (CA)n Simple_repeat Simple_repeat 1 47 0 1694 146 20 27 chr11 143307454 143307755 -7475798 + AluSx SINE Alu 5 303 -9 1020 228 0 5 chr11 143307763 143307965 -7475588 - MER3 DNA MER1_type -8 201 1 257 0 30 0 chr11 143308056 143308089 -7475464 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 332 350 0 0 chr11 143308328 143308425 -7475128 - L2 LINE L2 -54 3218 3122 2194 71 10 3 chr11 143308527 143308822 -7474731 + AluY SINE Alu 1 297 -14 290 295 42 11 chr11 143308915 143309010 -7474543 - L2 LINE L2 0 3272 3175 362 277 15 31 chr11 143310400 143310530 -7473023 - MER5A DNA MER1_type -45 144 17 360 0 0 0 chr11 143310835 143310875 -7472678 + (CA)n Simple_repeat Simple_repeat 2 41 0 238 325 36 0 chr11 143311370 143311453 -7472100 - MIR3 SINE MIR -19 189 104 309 308 103 6 chr11 143311978 143312134 -7471419 + MIR SINE MIR 58 228 -34 2064 141 0 0 chr11 143313034 143313341 -7470212 + AluSx SINE Alu 1 307 0 762 252 54 18 chr11 143314256 143314478 -7469075 - MIR SINE MIR 0 262 33 365 275 109 0 chr11 143314566 143314726 -7468827 - MIR SINE MIR -63 145 16 423 226 183 7 chr11 143314727 143314864 -7468689 - MIR SINE MIR -74 188 28 271 313 80 0 chr11 143315310 143315422 -7468131 + MIR SINE MIR 92 212 -50 345 297 86 31 chr11 143315571 143315699 -7467854 - MIR SINE MIR -6 256 122 554 304 21 10 chr11 143316297 143316499 -7467054 - MIR SINE MIR -50 212 10 228 182 0 0 chr11 143316887 143316931 -7466622 + GA-rich Low_complexity Low_complexity 4 47 0 2360 67 19 22 chr11 143316998 143317310 -7466243 + AluY SINE Alu 1 311 0 219 222 93 0 chr11 143317339 143317393 -7466160 + L2 LINE L2 3254 3312 -1 538 292 55 33 chr11 143318041 143318262 -7465291 + MIR SINE MIR 27 262 0 4345 163 14 21 chr11 143318928 143319081 -7464472 - L1MD2 LINE L1 -12 6230 6077 216 0 0 0 chr11 143319081 143319105 -7464448 + (TG)n Simple_repeat Simple_repeat 2 25 0 4345 163 14 21 chr11 143319105 143320075 -7463478 - L1MD2 LINE L1 -165 6077 5118 2252 113 0 0 chr11 143320075 143320375 -7463178 - AluSx SINE Alu -12 300 1 4345 163 14 21 chr11 143320375 143320585 -7462968 - L1MD2 LINE L1 -1124 5118 4908 615 231 61 58 chr11 143320580 143320857 -7462696 + L1ME4a LINE L1 5550 5827 -294 * 377 298 116 0 chr11 143320868 143320989 -7462564 - L2 LINE L2 -1 3271 3137 513 237 36 38 chr11 143321549 143321724 -7461829 - MIR SINE MIR -70 192 20 256 111 0 0 chr11 143321839 143321875 -7461678 + U2 snRNA snRNA 1 36 -152 208 292 73 96 chr11 143324438 143324657 -7458896 + L2 LINE L2 2604 2817 -497 202 314 0 38 chr11 143325167 143325272 -7458281 + GA-rich Low_complexity Low_complexity 1 101 0 288 53 0 0 chr11 143325883 143325921 -7457632 + (TG)n Simple_repeat Simple_repeat 1 38 0 227 290 196 29 chr11 143326628 143326766 -7456787 - L2 LINE L2 -2 3270 3110 592 273 82 23 chr11 143327555 143327775 -7455778 - MIR SINE MIR -10 252 20 318 35 35 18 chr11 143328723 143328780 -7454773 + (CA)n Simple_repeat Simple_repeat 1 58 0 201 277 0 0 chr11 143330609 143330656 -7452897 + MIR SINE MIR 53 99 -163 259 276 67 19 chr11 143330798 143330903 -7452650 + MIR SINE MIR 79 188 -74 252 0 0 0 chr11 143331039 143331067 -7452486 + (A)n Simple_repeat Simple_repeat 1 28 0 632 173 7 50 chr11 143331741 143331880 -7451673 + FLAM_A SINE Alu 1 133 0 363 274 59 7 chr11 143332240 143332375 -7451178 + MIR3 SINE MIR 42 183 -25 392 183 112 0 chr11 143333854 143334043 -7449510 + MER5B DNA MER1_type 7 171 -7 340 233 190 0 chr11 143335050 143335166 -7448387 - MIR SINE MIR -19 243 106 368 287 80 74 chr11 143335268 143335519 -7448034 + MIR SINE MIR 17 262 0 459 35 0 0 chr11 143335575 143335632 -7447921 + (TC)n Simple_repeat Simple_repeat 1 57 0 203 143 0 48 chr11 143335634 143335676 -7447877 + (TTCTCC)n Simple_repeat Simple_repeat 1 40 0 181 129 32 0 chr11 143337048 143337079 -7446474 - MER5A DNA MER1_type 0 189 158 255 275 233 16 chr11 143338780 143338969 -7444584 + MIR SINE MIR 20 249 -13 296 223 158 22 chr11 143339306 143339356 -7444197 + MER103 DNA DNA 2 44 -122 1724 139 7 39 chr11 143339356 143339636 -7443917 - AluSx SINE Alu -7 305 35 296 223 158 22 chr11 143339636 143339724 -7443829 + MER103 DNA DNA 44 159 -7 2900 13 0 0 chr11 143340143 143340453 -7443100 + AluYa5 SINE Alu 1 310 -1 573 288 40 0 chr11 143341539 143341716 -7441837 - MIR SINE MIR -33 229 46 2090 159 132 3 chr11 143342114 143342543 -7441010 - L1MB7 LINE L1 -19 6165 5684 220 158 35 18 chr11 143342671 143342728 -7440825 + MER91A DNA MER1_type 30 87 -109 1689 142 31 14 chr11 143342827 143343116 -7440437 - MER2 DNA MER2_type 0 345 52 355 354 52 0 chr11 143343228 143343420 -7440133 + MIR SINE MIR 6 207 -55 204 97 0 0 chr11 143343564 143343595 -7439958 + (A)n Simple_repeat Simple_repeat 1 31 0 851 109 73 29 chr11 143343879 143344016 -7439537 + FLAM_C SINE Alu 1 143 0 1907 144 0 18 chr11 143344021 143344305 -7439248 + AluJb SINE Alu 1 279 -33 24 0 0 0 chr11 143344340 143344364 -7439189 + AT_rich Low_complexity Low_complexity 1 24 0 2474 77 3 0 chr11 143344367 143344664 -7438889 + AluY SINE Alu 1 298 -13 321 200 0 0 chr11 143345474 143345539 -7438014 + L3 LINE CR1 1164 1228 -349 447 300 35 18 chr11 143345561 143345731 -7437822 + MIR SINE MIR 2 174 -88 243 242 0 0 chr11 143347164 143347226 -7436327 + (CATA)n Simple_repeat Simple_repeat 3 64 0 702 218 127 0 chr11 143347226 143347391 -7436162 - MIR SINE MIR -58 204 19 373 351 7 26 chr11 143347663 143347814 -7435739 - L2 LINE L2 -1 3271 3124 380 230 134 82 chr11 143348027 143348356 -7435197 + L1ME3 LINE L1 5778 6126 -40 292 200 13 27 chr11 143348460 143348535 -7435018 + HsTC2 DNA Tc2 14 87 -1811 242 293 70 51 chr11 143349243 143349400 -7434153 - MIR SINE MIR -54 208 49 203 265 1 9 chr11 143349477 143349557 -7433996 + CT-rich Low_complexity Low_complexity 1 61 0 245 304 76 0 chr11 143350255 143350334 -7433219 + L3b LINE CR1 1419 1503 -80 268 337 103 47 chr11 143350848 143351148 -7432405 - L2 LINE L2 -47 3225 2909 192 315 19 0 chr11 143351726 143351780 -7431773 - MIR SINE MIR -154 108 54 190 250 259 9 chr11 143352198 143352306 -7431247 - L2 LINE L2 -1 3271 3137 180 267 0 133 chr11 143352484 143352574 -7430979 + MIR SINE MIR 120 197 -65 203 288 14 41 chr11 143352640 143352713 -7430840 + L2 LINE L2 3238 3308 -5 335 314 120 37 chr11 143354884 143355075 -7428478 + MIR SINE MIR 20 226 -36 215 369 0 0 chr11 143355146 143355211 -7428342 - L3 LINE CR1 -103 1474 1410 273 155 0 0 chr11 143355391 143355449 -7428104 + GA-rich Low_complexity Low_complexity 2 59 0 494 248 8 0 chr11 143358409 143358534 -7425019 - MER103 DNA DNA -3 163 38 2395 88 3 25 chr11 143358733 143359050 -7424503 - AluSp SINE Alu -3 310 1 1646 180 0 34 chr11 143359064 143359380 -7424173 - AluSx SINE Alu 0 306 1 381 311 41 0 chr11 143359784 143359906 -7423647 - L2 LINE L2 0 3313 3187 625 176 9 0 chr11 143359921 143360029 -7423524 + FLAM_C SINE Alu 2 110 -33 593 230 42 30 chr11 143360269 143360434 -7423119 + Charlie8 DNA MER1_type 77 243 -2174 2142 88 0 0 chr11 143360706 143360967 -7422586 + AluSg SINE Alu 39 299 -11 2157 134 0 0 chr11 143360985 143361277 -7422276 + AluSx SINE Alu 1 292 -20 473 317 79 6 chr11 143361943 143362107 -7421446 + MIR3 SINE MIR 27 202 -6 853 165 11 43 chr11 143362448 143362636 -7420917 + MER53 DNA DNA 2 183 -6 3171 176 76 80 chr11 143362636 143363230 -7420323 - LTR48 LTR ERV1 0 787 192 2136 123 10 0 chr11 143363230 143363532 -7420021 - AluSg SINE Alu -5 305 1 222 37 0 0 chr11 143363534 143363561 -7419992 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2124 123 0 0 chr11 143363571 143363856 -7419697 - AluSq SINE Alu -28 285 1 3171 176 76 80 chr11 143363856 143364037 -7419516 - LTR48 LTR ERV1 -605 182 1 1855 172 0 13 chr11 143364166 143364468 -7419085 + AluJb SINE Alu 1 298 -14 2279 116 3 0 chr11 143364486 143364788 -7418765 + AluSq SINE Alu 1 303 -10 2227 120 7 0 chr11 143364967 143365275 -7418278 + AluSg SINE Alu 1 310 0 740 103 37 0 chr11 143365330 143365437 -7418116 - LTR61 LTR ERV1 0 595 485 558 112 84 47 chr11 143365404 143365511 -7418042 + LTR61 LTR ERV1 485 595 0 * 1997 196 19 27 chr11 143365511 143365975 -7417578 + HERV15 LTR ERV1 1 393 -8033 397 132 0 13 chr11 143366083 143366159 -7417394 + L1M4 LINE L1 5667 5741 -443 1390 177 140 80 chr11 143366161 143366224 -7417329 + LTR48 LTR ERV1 3 61 -726 1771 192 0 7 chr11 143366224 143366532 -7417021 + AluJb SINE Alu 1 306 -6 1390 177 140 80 chr11 143366532 143366919 -7416634 + LTR48 LTR ERV1 61 480 -307 195 42 0 0 chr11 143366937 143366961 -7416592 + (T)n Simple_repeat Simple_repeat 1 24 0 21 71 0 0 chr11 143366967 143367009 -7416544 + GC_rich Low_complexity Low_complexity 1 42 0 1182 173 147 37 chr11 143367126 143367398 -7416155 - AluJo SINE Alu 0 302 1 2826 233 59 26 chr11 143367398 143367538 -7416015 + L1ME2 LINE L1 5146 5280 -884 2329 105 0 0 chr11 143367538 143367833 -7415720 + AluSg SINE Alu 1 295 -15 2826 233 59 26 chr11 143367833 143367922 -7415631 + L1ME2 LINE L1 5280 5365 -799 1824 156 14 0 chr11 143367922 143368205 -7415348 + AluJb SINE Alu 1 287 -25 333 0 0 0 chr11 143368206 143368243 -7415310 + (CA)n Simple_repeat Simple_repeat 2 38 0 2826 233 59 26 chr11 143368243 143368440 -7415113 + L1ME2 LINE L1 5365 5554 -610 1912 78 4 0 chr11 143368440 143368684 -7414869 + L1PA13 LINE L1 5919 6163 0 2826 233 59 26 chr11 143368684 143369214 -7414339 + L1ME2 LINE L1 5554 6156 -8 527 285 0 0 chr11 143369235 143369386 -7414167 + L1M4 LINE L1 3767 3917 -2229 925 263 118 70 chr11 143369396 143370042 -7413511 + HAL1 LINE L1 1275 1951 -556 1811 148 3 38 chr11 143370143 143370433 -7413120 + AluSx SINE Alu 1 280 -32 936 236 149 10 chr11 143370452 143370761 -7412792 + MER74B LTR ERVL 146 497 -125 283 242 12 146 chr11 143370794 143370959 -7412594 + HAL1 LINE L1 2355 2497 -10 2240 112 3 0 chr11 143371091 143371387 -7412166 + AluSx SINE Alu 1 297 -15 1938 191 34 17 chr11 143372452 143372809 -7410744 + MLT1A1 LTR MaLR 1 363 -2 1900 140 3 33 chr11 143373025 143373325 -7410228 + AluJb SINE Alu 1 291 -21 2355 93 0 0 chr11 143373688 143373989 -7409564 + AluY SINE Alu 1 301 -10 248 95 24 0 chr11 143373991 143374033 -7409520 - MADE1 DNA Mariner -37 43 1 1221 158 15 10 chr11 143374164 143374367 -7409186 - AluJb SINE Alu -98 214 11 447 113 0 0 chr11 143374938 143375009 -7408544 + (GA)n Simple_repeat Simple_repeat 2 72 0 1878 140 12 43 chr11 143375613 143375935 -7407618 + AluJb SINE Alu 1 312 0 234 0 0 0 chr11 143376173 143376199 -7407354 + (A)n Simple_repeat Simple_repeat 1 26 0 817 279 76 21 chr11 143377358 143377595 -7405958 - MIR SINE MIR 0 262 13 1452 87 0 0 chr11 143377709 143377893 -7405660 + AluSp SINE Alu 130 313 0 2021 114 0 36 chr11 143378848 143379154 -7404399 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr11 143380087 143380108 -7403445 + AT_rich Low_complexity Low_complexity 1 21 0 397 267 26 43 chr11 143380544 143380660 -7402893 - MIR SINE MIR -67 141 28 191 250 194 0 chr11 143380970 143381042 -7402511 - L2 LINE L2 -5 3308 3223 1581 140 126 34 chr11 143381297 143381590 -7401963 + MER44D DNA MER2_type 1 590 -19 2164 107 0 4 chr11 143381594 143381904 -7401649 + AluSg SINE Alu 1 309 0 752 244 74 5 chr11 143383128 143383345 -7400208 + MIR SINE MIR 15 246 -16 189 121 0 0 chr11 143383370 143383403 -7400150 + (TTA)n Simple_repeat Simple_repeat 1 33 0 939 190 114 25 chr11 143383487 143383724 -7399829 + MER46C DNA MER2_type 80 337 -1 839 148 0 33 chr11 143383771 143383893 -7399660 + AluJo SINE Alu 1 118 -184 22 35 0 0 chr11 143383893 143383922 -7399631 + AT_rich Low_complexity Low_complexity 1 29 0 1894 138 38 0 chr11 143383957 143384247 -7399306 - AluSx SINE Alu -9 303 3 196 255 184 41 chr11 143385071 143385169 -7398384 + MIR SINE MIR 42 153 -55 24 32 0 0 chr11 143385192 143385223 -7398330 + AT_rich Low_complexity Low_complexity 1 31 0 1203 170 21 4 chr11 143385227 143385463 -7398090 - MER33 DNA MER1_type -255 69 1 887 163 0 20 chr11 143385523 143385676 -7397877 + Charlie4 DNA MER1_type 1812 1961 0 745 298 84 0 chr11 143385765 143386003 -7397550 + MIR SINE MIR 2 259 -3 1075 169 0 11 chr11 143386004 143386182 -7397371 + AluJo SINE Alu 126 301 -11 2232 90 0 24 chr11 143386240 143386560 -7396993 + AluSq SINE Alu 1 313 0 250 33 0 0 chr11 143386530 143386741 -7396812 + (GAAA)n Simple_repeat Simple_repeat 3 213 0 2488 31 7 3 chr11 143388750 143389042 -7394511 - AluY SINE Alu -18 293 1 395 156 0 0 chr11 143389052 143389116 -7394437 - Tigger7 DNA MER2_type -621 112 49 1014 218 127 46 chr11 143389258 143389629 -7393924 - L2 LINE L2 -1577 1737 1337 817 218 35 18 chr11 143389631 143389801 -7393752 + AluSx SINE Alu 3 175 -137 495 227 0 0 chr11 143389794 143389882 -7393671 - AluS SINE Alu -224 89 2 * 913 233 0 0 chr11 143389882 143390045 -7393508 + Tigger7 DNA MER2_type 104 266 -284 431 138 161 23 chr11 143390043 143390130 -7393423 + Tigger7 DNA MER2_type 2389 2487 0 * 2721 275 97 45 chr11 143390130 143391473 -7392080 + L2 LINE L2 1925 3313 0 434 342 131 19 chr11 143391484 143391949 -7391604 - L2 LINE L2 -1586 1728 1212 24 0 0 0 chr11 143392045 143392069 -7391484 + AT_rich Low_complexity Low_complexity 1 24 0 2394 60 0 45 chr11 143392152 143392466 -7391087 + AluY SINE Alu 1 300 -11 1950 132 10 0 chr11 143393689 143393985 -7389568 + AluSx SINE Alu 9 307 -5 35 41 0 0 chr11 143394046 143394095 -7389458 + AT_rich Low_complexity Low_complexity 1 49 0 634 259 86 26 chr11 143394112 143394344 -7389209 - HAL1b LINE L1 -340 1008 763 869 215 113 72 chr11 143394359 143394829 -7388724 + L1MC4 LINE L1 7554 8042 0 283 188 0 62 chr11 143394840 143394904 -7388649 - HAL1b LINE L1 -913 435 376 4248 191 77 65 chr11 143394920 143396573 -7386980 - L1MB7 LINE L1 -22 6660 5029 1791 167 37 28 chr11 143396573 143396926 -7386627 - MER46B DNA MER2_type -4 232 2 4248 191 77 65 chr11 143396926 143397257 -7386296 - L1MB7 LINE L1 -1653 5029 4704 2234 81 0 7 chr11 143397257 143397552 -7386001 + AluSg SINE Alu 1 293 -17 4248 191 77 65 chr11 143397552 143397847 -7385706 - L1MB7 LINE L1 -1978 4704 4371 863 213 77 24 chr11 143397854 143398061 -7385492 - AluJo SINE Alu -94 218 1 1031 207 18 0 chr11 143398139 143398308 -7385245 - FAM SINE Alu -3 172 1 376 176 12 0 chr11 143398310 143398395 -7385158 - L1MB7 LINE L1 -3819 2825 2740 1747 151 7 33 chr11 143398399 143398704 -7384849 + AluJb SINE Alu 1 297 -15 452 71 0 0 chr11 143398704 143398760 -7384793 + U2 snRNA snRNA 2 57 -131 1872 205 62 6 chr11 143398761 143399229 -7384324 - L1MB7 LINE L1 -4718 1928 1435 * 2775 214 59 23 chr11 143399221 143399391 -7384162 - L1MB7 LINE L1 -5398 1144 982 1798 99 99 31 chr11 143399391 143399683 -7383870 - AluSq SINE Alu -1 312 1 2775 214 59 23 chr11 143399683 143400240 -7383313 - L1MB7 LINE L1 -5560 982 391 1896 114 0 32 chr11 143400242 143400550 -7383003 - AluSg SINE Alu -11 299 2 4225 112 65 36 chr11 143400899 143401099 -7382454 + L1MA5A LINE L1 5550 5743 -554 1796 126 56 7 chr11 143401099 143401385 -7382168 + AluJo SINE Alu 1 300 -12 4225 112 65 36 chr11 143401385 143401909 -7381644 + L1MA5A LINE L1 5743 6295 -2 247 289 117 68 chr11 143402219 143402468 -7381085 + MLT1H LTR MaLR 195 455 -94 413 232 30 10 chr11 143402531 143402630 -7380923 + HAL1b LINE L1 251 351 -997 1203 188 76 12 chr11 143402664 143402914 -7380639 + L1M4 LINE L1 2 267 -6275 2381 96 0 0 chr11 143403012 143403315 -7380238 + AluSx SINE Alu 1 303 -9 236 288 0 0 chr11 143403994 143404060 -7379493 + L2 LINE L2 3247 3312 -1 199 289 211 6 chr11 143404269 143404435 -7379118 + MIR3 SINE MIR 3 202 -6 255 31 0 0 chr11 143404904 143404936 -7378617 + (T)n Simple_repeat Simple_repeat 1 32 0 519 116 0 0 chr11 143405822 143405891 -7377662 + AluJ/FLAM SINE Alu 1 69 -243 1347 83 0 0 chr11 143405893 143406061 -7377492 + AluSg/x SINE Alu 127 294 -16 2287 88 0 10 chr11 143406956 143407250 -7376303 - AluSg SINE Alu -19 291 1 658 266 90 65 chr11 143407261 143407922 -7375631 - L1ME LINE L1 -5000 1261 536 342 265 204 0 chr11 143408220 143408352 -7375201 - L1ME LINE L1 -5902 168 10 1260 204 188 0 chr11 143408373 143408618 -7374935 - AluJo SINE Alu -10 292 2 332 267 30 10 chr11 143408817 143408918 -7374635 - HAL1 LINE L1 -901 1606 1504 231 36 0 0 chr11 143409092 143409120 -7374433 + (A)n Simple_repeat Simple_repeat 1 28 0 2138 116 0 0 chr11 143409542 143409861 -7373692 - AluSq SINE Alu 0 319 1 1669 161 22 7 chr11 143410687 143410960 -7372593 + AluJo SINE Alu 5 281 -31 2291 102 7 3 chr11 143410960 143411263 -7372290 - AluSq SINE Alu -8 305 1 21 0 0 0 chr11 143411277 143411298 -7372255 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr11 143411387 143411416 -7372137 + AT_rich Low_complexity Low_complexity 1 29 0 498 181 0 0 chr11 143411809 143411881 -7371672 + FRAM/FAM SINE Alu 1 64 -112 2013 76 73 24 chr11 143411888 143412176 -7371377 + AluSg SINE Alu 9 310 0 216 143 0 0 chr11 143412382 143412424 -7371129 + (A)n Simple_repeat Simple_repeat 1 42 0 429 297 136 7 chr11 143413005 143413160 -7370393 + MIR SINE MIR 10 184 -78 2033 108 14 4 chr11 143413497 143413809 -7369744 + AluSx SINE Alu 1 315 0 1781 144 7 33 chr11 143414796 143415101 -7368452 + AluSx SINE Alu 1 297 -15 1441 171 19 19 chr11 143415656 143415913 -7367640 - AluJo SINE Alu -27 285 29 623 122 71 0 chr11 143416069 143416167 -7367386 - U6 snRNA snRNA -2 105 1 200 352 45 23 chr11 143416531 143416619 -7366934 - L2 LINE L2 -87 3185 3096 1529 116 5 19 chr11 143416619 143416834 -7366719 - AluSg/x SINE Alu -16 296 85 2357 103 7 0 chr11 143416905 143417206 -7366347 + AluSx SINE Alu 2 304 -8 27 62 0 0 chr11 143417210 143417258 -7366295 + AT_rich Low_complexity Low_complexity 1 48 0 198 0 0 0 chr11 143417427 143417449 -7366104 + (A)n Simple_repeat Simple_repeat 1 22 0 469 301 7 0 chr11 143417530 143417666 -7365887 - FRAM SINE Alu -39 137 1 831 129 0 0 chr11 143417926 143418042 -7365511 + AluJb SINE Alu 4 119 -193 868 137 74 0 chr11 143418106 143418281 -7365272 + L1MD3 LINE L1 7798 7985 -10 2283 105 7 3 chr11 143419227 143419532 -7364021 - AluSq SINE Alu -7 306 1 297 233 143 45 chr11 143420798 143420931 -7362622 - MIR3 SINE MIR -24 184 39 744 168 11 94 chr11 143421561 143421615 -7361938 + L1PB3 LINE L1 5980 6037 -117 2192 115 13 16 chr11 143421615 143421928 -7361625 + AluSx SINE Alu 1 312 0 744 168 11 94 chr11 143421928 143422064 -7361489 + L1PB3 LINE L1 6037 6154 0 467 223 118 19 chr11 143422079 143422290 -7361263 - LTR33A LTR ERVL -38 485 254 1091 247 0 4 chr11 143422645 143422884 -7360669 - MLT1A1 LTR MaLR 0 365 128 1601 158 10 26 chr11 143423120 143423423 -7360130 - AluJo SINE Alu -14 298 1 200 189 0 0 chr11 143424240 143424277 -7359276 - MIR SINE MIR -8 254 218 187 156 0 0 chr11 143425242 143425274 -7358279 - MIR SINE MIR -8 254 223 24 0 0 0 chr11 143425658 143425682 -7357871 + AT_rich Low_complexity Low_complexity 1 24 0 182 339 32 0 chr11 143425875 143425937 -7357616 + MIR SINE MIR 82 145 -117 504 346 60 16 chr11 143426667 143426985 -7356568 + L2 LINE L2 2382 2713 -601 191 403 19 52 chr11 143427139 143427293 -7356260 + L2 LINE L2 2919 3067 -205 297 305 0 0 chr11 143427362 143427444 -7356109 + MER58 DNA MER1_type 134 2420 0 2191 110 0 0 chr11 143429307 143429598 -7353955 - AluSc SINE Alu -18 291 1 402 21 0 0 chr11 143430253 143430300 -7353253 + (TG)n Simple_repeat Simple_repeat 1 47 0 416 312 50 32 chr11 143430721 143430939 -7352614 - L1 LINE L1 -1617 4529 4308 6483 206 28 55 chr11 143430948 143433654 -7349899 + L1P3 LINE L1 7 2648 -3813 2382 121 36 8 chr11 143433654 143434018 -7349535 - THE1C LTR MaLR 0 375 2 6483 206 28 55 chr11 143434018 143434143 -7349410 + L1P3 LINE L1 2648 2775 -3686 2192 151 47 63 chr11 143434960 143435469 -7348084 + MLT1D LTR MaLR 5 505 0 2181 119 76 17 chr11 143435795 143436139 -7347414 - THE1B LTR MaLR 0 364 1 347 331 22 15 chr11 143436256 143436392 -7347161 - L1 LINE L1 -1127 5019 4883 1970 276 38 38 chr11 143436460 143437180 -7346373 - MER21B LTR ERV1 -51 812 93 395 192 14 0 chr11 143437274 143437347 -7346206 - MER21B LTR ERV1 -774 89 16 2369 141 28 28 chr11 143437347 143437780 -7345773 - Tigger2a DNA MER2_type 0 434 2 2311 70 3 0 chr11 143437869 143438154 -7345399 + AluY SINE Alu 1 286 -25 2134 154 11 0 chr11 143438256 143438632 -7344921 - MSTB-int LTR MaLR -1271 380 1 2504 142 21 50 chr11 143438632 143439069 -7344484 - MSTB LTR MaLR -2 424 1 180 77 0 0 chr11 143439071 143439097 -7344456 + (CA)n Simple_repeat Simple_repeat 1 26 0 770 122 84 15 chr11 143439117 143439248 -7344305 + FRAM SINE Alu 18 157 -19 581 299 132 20 chr11 143439816 143440171 -7343382 + L2 LINE L2 1926 2320 -994 1644 238 52 15 chr11 143440481 143441037 -7342516 + L1MC4a LINE L1 5229 5806 -743 354 283 68 73 chr11 143441040 143441245 -7342308 + L1MC4a LINE L1 5859 6062 -1746 467 320 170 38 chr11 143442499 143443029 -7340524 + L2 LINE L2 2703 3289 -24 282 238 0 0 chr11 143443050 143443113 -7340440 + L1M4 LINE L1 4058 4120 -2026 187 325 100 0 chr11 143443155 143443235 -7340318 - L2 LINE L2 -1385 1929 1842 207 0 0 0 chr11 143443792 143443815 -7339738 + (A)n Simple_repeat Simple_repeat 1 23 0 231 169 42 70 chr11 143443875 143443946 -7339607 - L1ME LINE L1 -326 5795 5727 272 241 150 8 chr11 143444163 143444296 -7339257 - L1ME LINE L1 -402 5719 5568 23 0 0 0 chr11 143444919 143444942 -7338611 + AT_rich Low_complexity Low_complexity 1 23 0 1355 209 13 36 chr11 143445376 143445682 -7337871 - AluJo SINE Alu -13 299 1 727 228 35 20 chr11 143445703 143445905 -7337648 - MLT1A1 LTR MaLR 0 365 161 1889 124 11 4 chr11 143445925 143446190 -7337363 - AluSx SINE Alu -14 298 32 1745 142 7 17 chr11 143446240 143446528 -7337025 - AluJb SINE Alu -4 308 24 554 207 14 28 chr11 143446599 143446744 -7336809 - MLT1A1 LTR MaLR -222 143 1 1956 161 0 3 chr11 143446881 143447180 -7336373 - AluJo SINE Alu -9 303 6 260 119 48 0 chr11 143447668 143447710 -7335843 + LTR56 LTR ERV1 349 392 -53 1678 198 42 6 chr11 143447754 143448087 -7335466 - MER7A DNA MER2_type 0 346 4 287 268 138 50 chr11 143448096 143448480 -7335073 - L1ME4a LINE L1 -158 5963 5546 26 64 0 0 chr11 143448506 143448553 -7335000 + AT_rich Low_complexity Low_complexity 1 47 0 393 371 73 63 chr11 143449552 143449867 -7333686 - L2 LINE L2 -79 3193 2876 * 483 265 0 10 chr11 143449864 143449966 -7333587 + L2 LINE L2 3171 3271 -1 467 342 75 30 chr11 143449967 143450368 -7333185 - L2 LINE L2 -440 2874 2456 2443 265 211 33 chr11 143450468 143451302 -7332251 + L2 LINE L2 320 1004 -2310 1835 136 61 17 chr11 143451302 143451597 -7331956 - AluSx SINE Alu -4 308 1 2443 265 211 33 chr11 143451597 143451980 -7331573 + L2 LINE L2 1004 1754 -1560 364 156 0 0 chr11 143452111 143452175 -7331378 + Tigger7 DNA MER2_type 49 112 -593 2499 33 7 3 chr11 143452185 143452484 -7331069 + AluY SINE Alu 1 300 -11 1333 166 0 9 chr11 143452492 143452709 -7330844 - AluJb SINE Alu -11 301 87 356 135 0 0 chr11 143452709 143452761 -7330792 + AluSg/x SINE Alu 113 164 -138 540 161 11 0 chr11 143452761 143452854 -7330699 - AluJb SINE Alu -218 94 1 839 235 0 0 chr11 143452854 143453016 -7330537 + Tigger7 DNA MER2_type 105 266 -284 391 138 161 23 chr11 143453014 143453101 -7330452 + Tigger7 DNA MER2_type 2489 2587 0 * 2791 275 97 45 chr11 143453101 143454444 -7329109 + L2 LINE L2 1925 3313 0 476 350 127 15 chr11 143454455 143454920 -7328633 - L2 LINE L2 -1586 1728 1212 24 0 0 0 chr11 143455016 143455040 -7328513 + AT_rich Low_complexity Low_complexity 1 24 0 2380 64 0 45 chr11 143455123 143455437 -7328116 + AluY SINE Alu 1 300 -11 1945 132 10 0 chr11 143456660 143456956 -7326597 + AluSx SINE Alu 9 307 -5 35 41 0 0 chr11 143457017 143457066 -7326487 + AT_rich Low_complexity Low_complexity 1 49 0 527 259 63 29 chr11 143457083 143457288 -7326265 - HAL1b LINE L1 -340 1008 797 760 202 58 47 chr11 143457339 143457597 -7325956 + L1MC4 LINE L1 7560 7820 -222 258 188 0 62 chr11 143457811 143457875 -7325678 - HAL1b LINE L1 -913 435 376 3834 192 78 64 chr11 143457891 143459542 -7324011 - L1MB7 LINE L1 -22 6660 5033 1621 167 37 28 chr11 143459542 143459895 -7323658 - MER46B DNA MER2_type -4 232 2 3834 192 78 64 chr11 143459895 143460226 -7323327 - L1MB7 LINE L1 -1649 5033 4708 2250 82 0 3 chr11 143460226 143460520 -7323033 + AluSg SINE Alu 1 293 -17 3834 192 78 64 chr11 143460520 143460814 -7322739 - L1MB7 LINE L1 -1974 4708 4371 556 211 0 53 chr11 143460821 143460935 -7322618 - AluJb SINE Alu -94 218 111 308 174 12 12 chr11 143461433 143461519 -7322034 - L1MB7 LINE L1 -3819 2825 2740 1728 150 7 36 chr11 143461523 143461829 -7321724 + AluJb SINE Alu 1 297 -15 422 71 0 0 chr11 143461829 143461885 -7321668 + U2 snRNA snRNA 2 57 -131 1676 205 62 6 chr11 143461886 143462354 -7321199 - L1MB7 LINE L1 -4718 1928 1435 * 3422 219 83 30 chr11 143462346 143462522 -7321031 - L1MB7 LINE L1 -5398 1144 979 1851 101 101 17 chr11 143462522 143462810 -7320743 - AluSq SINE Alu -1 312 1 3422 219 83 30 chr11 143462810 143463369 -7320184 - L1MB7 LINE L1 -5563 979 330 2364 96 0 0 chr11 143463369 143463670 -7319883 - AluSx SINE Alu -11 301 1 3422 219 83 30 chr11 143463670 143464018 -7319535 - L1MB7 LINE L1 -6212 330 2 413 232 30 10 chr11 143464052 143464151 -7319402 - HAL1b LINE L1 -997 351 251 247 289 117 68 chr11 143464214 143464463 -7319090 - MLT1H LTR MaLR -94 455 195 4225 112 65 36 chr11 143464773 143465297 -7318256 - L1MA5A LINE L1 -2 6295 5743 1796 126 56 7 chr11 143465297 143465583 -7317970 - AluJo SINE Alu -12 300 1 4225 112 65 36 chr11 143465583 143465783 -7317770 - L1MA5A LINE L1 -554 5743 5550 2244 95 0 10 chr11 143466132 143466426 -7317127 + AluSg SINE Alu 2 292 -18 26 93 0 0 chr11 143466516 143466591 -7316962 + AT_rich Low_complexity Low_complexity 1 75 0 189 0 0 0 chr11 143467254 143467275 -7316278 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 899 181 0 0 chr11 143468298 143468442 -7315111 + FRAM SINE Alu 12 155 -21 421 303 138 0 chr11 143468719 143468864 -7314689 + L2 LINE L2 2245 2409 -905 213 206 127 16 chr11 143468858 143468921 -7314632 + L2 LINE L2 3014 3083 -230 * 289 60 0 40 chr11 143469270 143469320 -7314233 + (TG)n Simple_repeat Simple_repeat 1 48 0 888 232 126 102 chr11 143469731 143470137 -7313416 - L1ME3 LINE L1 -312 5784 5389 1494 154 0 9 chr11 143470137 143470370 -7313183 - AluJb SINE Alu 0 312 82 888 232 126 102 chr11 143470370 143470762 -7312791 - L1ME3 LINE L1 -707 5389 4962 1825 163 27 0 chr11 143470762 143471063 -7312490 - AluJb SINE Alu 0 312 4 888 232 126 102 chr11 143471063 143471206 -7312347 - L1ME3 LINE L1 -1134 4962 4824 610 233 96 37 chr11 143471226 143471496 -7312057 - L1MC5 LINE L1 -328 7633 7348 289 197 111 8 chr11 143471534 143471651 -7311902 - L1ME3 LINE L1 -3120 2960 2832 2187 184 78 45 chr11 143471757 143472294 -7311259 - L1MB7 LINE L1 -2 6182 5628 609 269 70 38 chr11 143472310 143472473 -7311080 - L1ME3 LINE L1 -3467 2613 2457 857 197 0 0 chr11 143472473 143472605 -7310948 - FLAM_A SINE Alu -1 132 1 609 269 70 38 chr11 143472605 143472812 -7310741 - L1ME3 LINE L1 -3623 2457 2231 344 250 150 31 chr11 143472852 143472867 -7310686 - L1ME3 LINE L1 -3970 2291 2279 2433 69 0 0 chr11 143472867 143473156 -7310397 - AluSp SINE Alu -24 289 1 344 250 150 31 chr11 143473156 143473381 -7310172 - L1ME3 LINE L1 -3982 2279 1992 2054 154 0 0 chr11 143473381 143473692 -7309861 - AluSx SINE Alu -1 311 1 344 250 150 31 chr11 143473692 143473810 -7309743 - L1ME3 LINE L1 -4269 1992 1889 4683 177 90 12 chr11 143473937 143474190 -7309363 - L1MD1 LINE L1 -24 6218 5986 2199 175 16 16 chr11 143474190 143474555 -7308998 - MLT1A1 LTR MaLR 0 365 1 4683 177 90 12 chr11 143474555 143475552 -7308001 - L1MD1 LINE L1 -256 5986 4873 2679 179 3 61 chr11 143475585 143476223 -7307330 - L1P LINE L1 -837 5309 4709 412 125 34 91 chr11 143476223 143476311 -7307242 - L1M3 LINE L1 -693 5475 5393 2445 74 0 7 chr11 143476313 143476612 -7306941 - AluSg SINE Alu -13 297 1 658 266 90 65 chr11 143476623 143477284 -7306269 - L1ME3 LINE L1 -5000 1261 536 342 265 204 0 chr11 143477582 143477714 -7305839 - L1ME3 LINE L1 -5902 168 10 1260 204 188 0 chr11 143477735 143477980 -7305573 - AluJo SINE Alu -10 292 2 332 267 30 10 chr11 143478179 143478280 -7305273 - HAL1 LINE L1 -901 1606 1504 220 244 16 98 chr11 143478530 143478653 -7304900 + MIR SINE MIR 106 218 -44 192 256 153 66 chr11 143479595 143479837 -7303716 + L2 LINE L2 1538 1800 -1514 2230 98 13 3 chr11 143479986 143480291 -7303262 - AluSg SINE Alu -2 308 1 301 320 130 24 chr11 143480377 143480624 -7302929 + L2 LINE L2 2259 2531 -783 1868 102 65 4 chr11 143480667 143480942 -7302611 + AluSx SINE Alu 1 292 -20 184 329 14 57 chr11 143481368 143481438 -7302115 + L2 LINE L2 2593 2659 -655 915 230 11 11 chr11 143481813 143481991 -7301562 - MER5B DNA MER1_type 0 178 1 314 245 50 93 chr11 143482463 143482602 -7300951 - L2 LINE L2 -1 3312 3180 2193 132 0 0 chr11 143482689 143482999 -7300554 - AluSq SINE Alu -2 311 2 382 260 126 8 chr11 143483849 143483976 -7299577 + MIR SINE MIR 13 154 -108 353 279 0 0 chr11 143484221 143484307 -7299246 + MER69 DNA AcHobo 2 87 -2439 292 121 121 15 chr11 143484355 143484421 -7299132 + MER69 DNA AcHobo 2435 2507 -19 429 95 0 0 chr11 143485771 143485834 -7297719 + (TA)n Simple_repeat Simple_repeat 1 63 0 2448 100 0 0 chr11 143486035 143486346 -7297207 - AluSx SINE Alu -1 311 1 941 254 65 90 chr11 143487995 143488460 -7295093 + LTR33 LTR ERVL 3 455 -66 355 145 32 0 chr11 143488469 143488531 -7295022 - LTR33 LTR ERVL -2 519 456 2308 135 130 22 chr11 143488787 143489202 -7294351 - LTR46 LTR ERV1 0 460 1 364 319 103 0 chr11 143489202 143489318 -7294235 + L2 LINE L2 3101 3228 -44 386 209 86 80 chr11 143489777 143489840 -7293713 + L1MC5 LINE L1 7763 7824 -137 2227 127 0 7 chr11 143489840 143490148 -7293405 + AluSq SINE Alu 1 306 -7 386 209 86 80 chr11 143490148 143490247 -7293306 + L1MC5 LINE L1 7824 7926 -35 474 244 141 0 chr11 143490408 143490564 -7292989 + MER45A DNA AcHobo 1 178 0 1176 216 68 49 chr11 143490833 143491327 -7292226 - MER21B LTR ERV1 -312 551 1 521 280 71 57 chr11 143491327 143491663 -7291890 + HAL1 LINE L1 1792 2132 -375 316 70 0 0 chr11 143491731 143491774 -7291779 + MADE1 DNA Mariner 1 43 -37 3674 115 43 6 chr11 143492158 143492697 -7290856 + LTR6A LTR ERV1 6 564 0 554 259 97 40 chr11 143492840 143492900 -7290653 + L2 LINE L2 2919 2974 -339 1280 207 141 47 chr11 143492900 143493326 -7290227 + MER31B LTR ERV1 1 466 0 554 259 97 40 chr11 143493326 143493512 -7290041 + L2 LINE L2 2974 3179 -134 402 240 125 65 chr11 143493596 143493714 -7289839 + HAL1 LINE L1 2150 2286 -221 2210 108 3 3 chr11 143493714 143494010 -7289543 + AluSp SINE Alu 1 296 -17 402 240 125 65 chr11 143494010 143494091 -7289462 + HAL1 LINE L1 2286 2361 -146 3881 98 6 8 chr11 143494113 143494625 -7288928 + MER9 LTR ERVK 1 511 0 508 287 56 10 chr11 143495134 143495329 -7288224 + MIR SINE MIR 40 243 -19 372 305 42 17 chr11 143495908 143496026 -7287527 - MIR SINE MIR -113 149 29 368 205 24 0 chr11 143496266 143496349 -7287204 + MER20 DNA MER1_type 1 85 -134 374 334 141 12 chr11 143497468 143497788 -7285765 - L2 LINE L2 -1261 2053 1693 238 317 14 21 chr11 143497916 143498058 -7285495 + CT-rich Low_complexity Low_complexity 3 143 0 30 0 0 0 chr11 143498086 143498116 -7285437 + AT_rich Low_complexity Low_complexity 1 30 0 1780 100 8 0 chr11 143498503 143498742 -7284811 + L1PA8 LINE L1 5932 6172 0 1542 146 49 0 chr11 143498801 143499047 -7284506 + L1MC1 LINE L1 6063 6320 -13 2135 95 0 24 chr11 143499110 143499406 -7284147 + AluY SINE Alu 1 289 -22 490 240 10 10 chr11 143499522 143499626 -7283927 + MER81 DNA DNA 11 114 0 480 341 33 23 chr11 143500860 143501074 -7282479 - MIR SINE MIR -26 236 21 201 295 13 26 chr11 143501165 143501243 -7282310 + L3 LINE CR1 1467 1543 -34 1645 210 43 0 chr11 143501695 143502019 -7281534 + Tigger6 DNA MER2_type 1 338 -1259 527 211 0 18 chr11 143502010 143502119 -7281434 + Tigger6 DNA MER2_type 1138 1244 -353 * 3421 58 0 0 chr11 143502120 143502548 -7281005 + L1P LINE L1 4400 4827 -1319 250 234 0 0 chr11 143503782 143503829 -7279724 - MER96 DNA MER1_type? -127 48 2 2568 179 14 2 chr11 143506076 143506494 -7277059 + MSTB LTR MaLR 1 423 -3 4178 152 49 9 chr11 143507946 143508645 -7274908 + L1MB2 LINE L1 5443 6169 -2 1073 154 53 0 chr11 143508659 143508847 -7274706 + L1PBa LINE L1 1 198 -6665 3306 113 39 18 chr11 143508849 143509636 -7273917 + L1PBa LINE L1 636 1582 -5281 1026 220 69 20 chr11 143509633 143509938 -7273615 + L1MC3 LINE L1 7466 7785 0 * 3846 141 25 16 chr11 143509980 143510589 -7272964 + L1PA8 LINE L1 10 623 -5838 4476 127 34 102 chr11 143510589 143512096 -7271457 - pTR5 LTR ERV1 0 2606 1524 19284 109 7 8 chr11 143512096 143517963 -7265590 + L1PA8 LINE L1 617 6486 0 253 122 0 0 chr11 143518291 143518339 -7265214 - L1MB1 LINE L1 -1 6167 6126 * 42149 40 1 0 chr11 143518334 143524479 -7259074 - L1PA4 LINE L1 -1 6154 3 1184 207 26 34 chr11 143524485 143524872 -7258681 - L1M4 LINE L1 -841 5803 5420 2048 106 17 14 chr11 143526488 143526780 -7256773 + AluSc SINE Alu 1 293 -16 2583 192 52 19 chr11 143528910 143529531 -7254022 - L1MB8 LINE L1 -1 6177 5537 363 342 0 13 chr11 143529553 143529705 -7253848 + CT-rich Low_complexity Low_complexity 3 152 0 586 321 33 8 chr11 143529971 143530211 -7253342 + MIR SINE MIR 5 250 -12 444 277 8 31 chr11 143530397 143530527 -7253026 - MIR SINE MIR -134 128 2 243 314 81 8 chr11 143531711 143531835 -7251718 + MLT1K LTR MaLR 103 235 -353 439 161 65 1 chr11 143532172 143532336 -7251217 + MER2 DNA MER2_type 1 198 -147 229 297 40 14 chr11 143532379 143532453 -7251100 + MER2 DNA MER2_type 270 345 0 28 0 0 0 chr11 143532656 143532684 -7250869 + AT_rich Low_complexity Low_complexity 1 28 0 2443 91 0 0 chr11 143533053 143533360 -7250193 + AluSc SINE Alu 1 307 -2 25 0 0 0 chr11 143533505 143533530 -7250023 + AT_rich Low_complexity Low_complexity 1 25 0 545 258 70 5 chr11 143533746 143533959 -7249594 - L1M4 LINE L1 -2417 4227 4001 1003 188 21 10 chr11 143533960 143534152 -7249401 - AluJb SINE Alu -6 306 113 1765 166 0 12 chr11 143534170 143534507 -7249046 - L1MC3 LINE L1 -55 7730 7398 270 113 0 155 chr11 143534568 143534639 -7248914 + MSTC LTR MaLR 363 422 -6 417 218 137 24 chr11 143535074 143535198 -7248355 - MIR SINE MIR -108 154 17 625 288 73 13 chr11 143535527 143535760 -7247793 + MIR SINE MIR 5 251 -11 203 307 40 40 chr11 143536040 143536115 -7247438 - MIR SINE MIR -184 78 4 263 250 17 0 chr11 143537245 143537305 -7246248 + L1M4 LINE L1 1 61 -7107 367 209 227 0 chr11 143537521 143537631 -7245922 - MIR SINE MIR -3 259 125 352 213 218 30 chr11 143537621 143537818 -7245735 - L2 LINE L2 -947 2367 2134 * 358 305 104 6 chr11 143540104 143540268 -7243285 + MIR SINE MIR 35 214 -48 853 273 138 66 chr11 143540375 143541090 -7242463 + L1MD2 LINE L1 537 1303 -5701 1700 235 14 6 chr11 143541091 143541597 -7241956 - L1M4 LINE L1 -4833 1709 1200 1784 258 20 3 chr11 143541603 143542215 -7241338 + L1MD2 LINE L1 3995 4616 -2490 1786 141 132 6 chr11 143542227 143542582 -7240971 + MSTA LTR MaLR 29 428 0 5105 212 27 35 chr11 143542582 143544171 -7239382 + L1MD2 LINE L1 4613 6189 -917 2184 231 21 24 chr11 143544175 143544922 -7238631 + L1M4 LINE L1 1827 2582 -4516 4939 170 29 24 chr11 143544928 143546467 -7237086 + L1MA7 LINE L1 4746 6289 -2 969 219 47 17 chr11 143547346 143547643 -7235910 - L1ME1 LINE L1 -4 6162 5857 500 215 31 40 chr11 143547637 143548185 -7235368 + L1MD2 LINE L1 6602 7273 -46 * 282 329 55 12 chr11 143548341 143548505 -7235048 + L2 LINE L2 1805 1975 -1339 381 298 99 8 chr11 143548993 143549235 -7234318 - L1MEc LINE L1 -4823 1573 1310 2249 106 0 40 chr11 143549361 143549682 -7233871 + AluSx SINE Alu 1 308 -4 24 32 0 0 chr11 143549870 143549901 -7233652 + AT_rich Low_complexity Low_complexity 1 31 0 195 42 0 0 chr11 143551872 143551896 -7231657 + (TG)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr11 143555643 143555664 -7227889 + (CA)n Simple_repeat Simple_repeat 1 21 0 21 36 0 0 chr11 143555935 143555963 -7227590 + AT_rich Low_complexity Low_complexity 1 28 0 41 0 0 0 chr11 143556628 143556669 -7226884 + AT_rich Low_complexity Low_complexity 1 41 0 422 304 109 0 chr11 143556735 143556873 -7226680 - L2 LINE L2 -4 3268 3116 282 261 78 9 chr11 143556868 143556983 -7226570 - MIR SINE MIR 0 262 140 * 601 174 0 0 chr11 143557242 143557340 -7226213 + FRAM SINE Alu 54 151 -25 820 219 318 6 chr11 143557413 143557765 -7225788 - LTR50 LTR ERVL -333 462 1 968 307 56 24 chr11 143558122 143558584 -7224969 - HERV16 LTR ERVL -395 5369 4893 1180 296 36 16 chr11 143558624 143559067 -7224486 - HERV16 LTR ERVL -883 4771 4320 424 301 129 0 chr11 143559245 143559438 -7224115 - HERV16 LTR ERVL -2133 3631 3414 470 243 68 40 chr11 143559438 143559586 -7223967 - MIR SINE MIR -102 160 9 2276 119 0 0 chr11 143560063 143560375 -7223178 + AluSx SINE Alu 1 312 0 1251 199 76 3 chr11 143561367 143561749 -7221804 - L1M4c LINE L1 -2633 4215 3806 20783 104 7 17 chr11 143562450 143567987 -7215566 + L1P3 LINE L1 1 5511 -950 1134 135 0 0 chr11 143568002 143568165 -7215388 + L1PB1 LINE L1 5988 6150 -1 1025 235 13 4 chr11 143568182 143568453 -7215100 - L1M4c LINE L1 -3778 3070 2795 1532 237 30 41 chr11 143568453 143568846 -7214707 - MSTD LTR MaLR -7 389 1 2542 220 66 2 chr11 143568853 143569380 -7214173 - MSTD-int LTR MaLR -7 1728 1168 2638 216 157 3 chr11 143569404 143570094 -7213459 - L1M4c LINE L1 -4240 2610 1815 288 253 0 81 chr11 143573262 143573361 -7210192 - L2 LINE L2 -1 3312 3222 234 336 10 19 chr11 143573727 143573831 -7209722 + MIR SINE MIR 158 260 -2 4729 134 16 12 chr11 143574551 143575302 -7208251 - MER4E LTR ERV1 -3 763 10 2334 44 7 17 chr11 143576054 143576350 -7207203 + AluY SINE Alu 1 293 -18 453 313 73 17 chr11 143576755 143576988 -7206565 + LTR33 LTR ERVL 1 246 -275 291 259 85 55 chr11 143577024 143577225 -7206328 + LTR33 LTR ERVL 314 520 -1 1385 273 101 10 chr11 143577407 143577824 -7205729 - LTR16A1 LTR ERVL 0 457 3 613 307 22 13 chr11 143578207 143578438 -7205115 - HERV16 LTR ERVL -642 5122 4890 365 352 41 24 chr11 143578581 143579002 -7204551 - HERV16 LTR ERVL -3226 1770 1389 1039 327 58 7 chr11 143579042 143579494 -7204059 - HERV16 LTR ERVL -3792 1204 730 800 305 58 18 chr11 143579771 143580171 -7203382 - HERV16 LTR ERVL -4580 416 1 932 256 71 46 chr11 143580171 143580538 -7203015 - LTR16A1 LTR ERVL 0 457 82 6972 190 48 26 chr11 143580958 143582021 -7201532 - L1MC3 LINE L1 -945 7097 5888 2205 144 5 47 chr11 143582021 143582403 -7201150 + MER47A DNA MER2_type 1 366 0 6972 190 48 26 chr11 143582403 143582988 -7200565 - L1MC3 LINE L1 -2154 5888 5317 210 37 0 0 chr11 143582994 143583021 -7200532 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 820 19 19 75 chr11 143583021 143583127 -7200426 - L1PA8 LINE L1 -17 6155 6056 270 197 15 30 chr11 143584976 143585042 -7198511 + LTR49 LTR ERV1 459 523 -72 1063 98 33 13 chr11 143585879 143586032 -7197521 - L1PA16 LINE L1 -8 6158 6003 689 342 84 25 chr11 143586054 143586457 -7197096 + L2 LINE L2 2449 2875 -439 489 304 150 15 chr11 143586445 143586718 -7196835 + L2 LINE L2 3004 3313 0 * 199 263 0 0 chr11 143586720 143586777 -7196776 + L2 LINE L2 2633 2689 -625 6733 203 25 30 chr11 143587043 143588699 -7194854 - L1MEc LINE L1 -2312 3903 2255 180 0 0 0 chr11 143588699 143588719 -7194834 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1969 186 5 29 chr11 143588734 143589116 -7194437 - L1PA16 LINE L1 -1 6165 5793 897 236 141 0 chr11 143589130 143589372 -7194181 - L1 LINE L1 -1753 4393 4118 2247 108 0 7 chr11 143589374 143589670 -7193883 - AluSx SINE Alu -18 294 1 1366 231 62 25 chr11 143589769 143590172 -7193381 - L1MC4 LINE L1 -188 7854 7437 34 55 0 0 chr11 143590245 143590300 -7193253 + AT_rich Low_complexity Low_complexity 1 55 0 1480 189 11 22 chr11 143590334 143590604 -7192949 - AluJo SINE Alu -45 267 1 1360 269 97 62 chr11 143590609 143591259 -7192294 - L1MEc LINE L1 -4139 2076 1450 2491 80 0 6 chr11 143591259 143591571 -7191982 - AluSg SINE Alu 0 310 1 1360 269 97 62 chr11 143591571 143592237 -7191316 - L1MEc LINE L1 -4765 1450 726 342 265 204 0 chr11 143592541 143592673 -7190880 - L1MEc LINE L1 -5902 303 145 1260 204 188 0 chr11 143592694 143592939 -7190614 - AluJo SINE Alu -10 292 2 332 267 30 10 chr11 143593138 143593239 -7190314 - HAL1 LINE L1 -901 1606 1504 220 244 16 98 chr11 143593489 143593612 -7189941 + MIR SINE MIR 106 218 -44 192 256 153 66 chr11 143594555 143594797 -7188756 + L2 LINE L2 1538 1800 -1514 2247 99 13 0 chr11 143594946 143595248 -7188305 - AluSg SINE Alu -4 306 1 301 320 130 24 chr11 143595334 143595581 -7187972 + L2 LINE L2 2259 2531 -783 1903 102 66 0 chr11 143595624 143595898 -7187655 + AluSx SINE Alu 1 292 -20 184 329 14 57 chr11 143596324 143596394 -7187159 + L2 LINE L2 2593 2659 -655 915 230 11 11 chr11 143596769 143596947 -7186606 - MER5B DNA MER1_type 0 178 1 314 245 50 93 chr11 143597418 143597557 -7185996 - L2 LINE L2 -1 3312 3180 2193 132 0 0 chr11 143597644 143597954 -7185599 - AluSq SINE Alu -2 311 2 382 260 126 8 chr11 143598804 143598931 -7184622 + MIR SINE MIR 13 154 -108 353 279 0 0 chr11 143599176 143599262 -7184291 + MER69 DNA AcHobo 2 87 -2439 292 121 121 15 chr11 143599310 143599376 -7184177 + MER69 DNA AcHobo 2435 2507 -19 207 219 0 0 chr11 143600726 143600767 -7182786 + (TA)n Simple_repeat Simple_repeat 1 41 0 2419 104 0 0 chr11 143600958 143601267 -7182286 - AluSx SINE Alu -3 309 1 941 254 65 90 chr11 143602915 143603380 -7180173 + LTR33 LTR ERVL 3 455 -66 355 145 32 0 chr11 143603389 143603451 -7180102 - LTR33 LTR ERVL -2 519 456 2308 135 130 22 chr11 143603707 143604122 -7179431 - LTR46 LTR ERV1 0 460 1 364 319 103 0 chr11 143604122 143604238 -7179315 + L2 LINE L2 3101 3228 -44 386 209 86 80 chr11 143604697 143604760 -7178793 + L1MC5 LINE L1 7763 7824 -137 2235 126 0 7 chr11 143604760 143605069 -7178484 + AluSq SINE Alu 1 307 -6 386 209 86 80 chr11 143605069 143605168 -7178385 + L1MC5 LINE L1 7824 7926 -35 474 244 141 0 chr11 143605329 143605485 -7178068 + MER45A DNA AcHobo 1 178 0 1176 216 68 49 chr11 143605754 143606248 -7177305 - MER21B LTR ERV1 -312 551 1 521 280 71 57 chr11 143606248 143606584 -7176969 + HAL1 LINE L1 1792 2132 -375 316 70 0 0 chr11 143606652 143606695 -7176858 + MADE1 DNA Mariner 1 43 -37 3674 115 43 6 chr11 143607079 143607618 -7175935 + LTR6A LTR ERV1 6 564 0 554 259 97 40 chr11 143607761 143607821 -7175732 + L2 LINE L2 2919 2974 -339 1280 207 141 47 chr11 143607821 143608247 -7175306 + MER31B LTR ERV1 1 466 0 554 259 97 40 chr11 143608247 143608433 -7175120 + L2 LINE L2 2974 3179 -134 402 240 125 65 chr11 143608517 143608635 -7174918 + HAL1 LINE L1 2150 2286 -221 2191 111 3 3 chr11 143608635 143608932 -7174621 + AluSp SINE Alu 1 297 -16 402 240 125 65 chr11 143608932 143609013 -7174540 + HAL1 LINE L1 2286 2361 -146 3868 100 6 8 chr11 143609035 143609547 -7174006 + MER9 LTR ERVK 1 511 0 508 287 56 10 chr11 143610056 143610251 -7173302 + MIR SINE MIR 40 243 -19 372 305 42 17 chr11 143610830 143610948 -7172605 - MIR SINE MIR -113 149 29 368 205 24 0 chr11 143611188 143611271 -7172282 + MER20 DNA MER1_type 1 85 -134 374 334 141 12 chr11 143612390 143612710 -7170843 - L2 LINE L2 -1261 2053 1693 238 317 14 21 chr11 143612838 143612980 -7170573 + CT-rich Low_complexity Low_complexity 3 143 0 30 0 0 0 chr11 143613008 143613038 -7170515 + AT_rich Low_complexity Low_complexity 1 30 0 1798 96 8 0 chr11 143613425 143613664 -7169889 + L1PA8 LINE L1 5932 6172 0 1542 146 49 0 chr11 143613723 143613969 -7169584 + L1MC1 LINE L1 6063 6320 -13 2135 95 0 24 chr11 143614032 143614328 -7169225 + AluY SINE Alu 1 289 -22 490 240 10 10 chr11 143614444 143614548 -7169005 + MER81 DNA DNA 11 114 0 480 341 33 23 chr11 143615782 143615996 -7167557 - MIR SINE MIR -26 236 21 201 295 13 26 chr11 143616087 143616165 -7167388 + L3 LINE CR1 1467 1543 -34 1503 210 43 0 chr11 143616617 143616941 -7166612 + Tigger6 DNA MER2_type 1 338 -1259 477 211 0 18 chr11 143616932 143617041 -7166512 + Tigger6 DNA MER2_type 1138 1244 -353 * 3195 58 0 0 chr11 143617042 143617470 -7166083 + L1P LINE L1 4400 4827 -1319 236 234 0 0 chr11 143618704 143618751 -7164802 - MER96 DNA MER1_type? -127 48 2 2381 179 14 2 chr11 143620998 143621416 -7162137 + MSTB LTR MaLR 1 423 -3 3819 152 49 9 chr11 143622868 143623567 -7159986 + L1MB2 LINE L1 5443 6169 -2 987 154 53 0 chr11 143623581 143623769 -7159784 + L1PBa LINE L1 1 198 -6665 3076 109 29 16 chr11 143623771 143624559 -7158994 + L1PBa LINE L1 636 1582 -5281 678 197 58 29 chr11 143624556 143624764 -7158789 + L1MC3 LINE L1 7466 7679 -106 * 525 216 61 39 chr11 143624770 143624951 -7158602 - L1MC4 LINE L1 -298 7744 7560 527 259 63 29 chr11 143625002 143625207 -7158346 + HAL1b LINE L1 797 1008 -340 35 41 0 0 chr11 143625224 143625273 -7158280 + AT_rich Low_complexity Low_complexity 1 49 0 1945 132 10 0 chr11 143625334 143625630 -7157923 - AluSx SINE Alu -5 307 9 2420 57 0 45 chr11 143626853 143627167 -7156386 - AluY SINE Alu -11 300 1 24 0 0 0 chr11 143627250 143627274 -7156279 + AT_rich Low_complexity Low_complexity 1 24 0 476 350 127 15 chr11 143627370 143627835 -7155718 + L2 LINE L2 1212 1728 -1586 2791 275 97 45 chr11 143627846 143629189 -7154364 - L2 LINE L2 0 3313 1925 391 138 161 23 chr11 143629189 143629276 -7154277 - Tigger7 DNA MER2_type 0 2587 2489 * 839 235 0 0 chr11 143629274 143629436 -7154117 - Tigger7 DNA MER2_type -284 266 105 540 161 11 0 chr11 143629436 143629529 -7154024 + AluJb SINE Alu 1 94 -218 356 135 0 0 chr11 143629529 143629581 -7153972 - AluSg/x SINE Alu -138 164 113 1333 166 0 9 chr11 143629581 143629798 -7153755 + AluJb SINE Alu 87 301 -11 2489 34 7 3 chr11 143629806 143630104 -7153449 - AluY SINE Alu -12 299 1 364 156 0 0 chr11 143630114 143630178 -7153375 - Tigger7 DNA MER2_type -621 112 49 2443 265 211 33 chr11 143630309 143630692 -7152861 - L2 LINE L2 -1560 1754 1441 1820 142 57 17 chr11 143630692 143630988 -7152565 + AluSx SINE Alu 1 308 -4 2443 265 211 33 chr11 143630988 143631822 -7151731 - L2 LINE L2 -1873 1441 320 467 342 75 30 chr11 143631922 143632323 -7151230 + L2 LINE L2 2456 2874 -440 483 265 0 10 chr11 143632324 143632426 -7151127 - L2 LINE L2 -1 3271 3171 393 371 73 63 chr11 143632423 143632738 -7150815 + L2 LINE L2 2876 3193 -79 * 26 64 0 0 chr11 143633737 143633784 -7149769 + AT_rich Low_complexity Low_complexity 1 47 0 287 268 138 50 chr11 143633810 143634194 -7149359 + L1ME4a LINE L1 5546 5963 -158 1678 198 42 6 chr11 143634203 143634536 -7149017 + MER7A DNA MER2_type 4 346 0 260 119 48 0 chr11 143634580 143634622 -7148931 - LTR56 LTR ERV1 -53 392 349 1956 161 0 3 chr11 143635110 143635409 -7148144 + AluJo SINE Alu 6 303 -9 554 207 14 28 chr11 143635546 143635691 -7147862 + MLT1A1 LTR MaLR 1 143 -222 1745 142 7 17 chr11 143635762 143636050 -7147503 + AluJb SINE Alu 24 308 -4 1898 124 11 4 chr11 143636100 143636366 -7147187 + AluSx SINE Alu 32 299 -13 727 228 35 20 chr11 143636386 143636588 -7146965 + MLT1A1 LTR MaLR 161 365 0 1314 208 13 42 chr11 143636609 143636917 -7146636 + AluJo SINE Alu 1 299 -13 23 0 0 0 chr11 143637351 143637374 -7146179 + AT_rich Low_complexity Low_complexity 1 23 0 272 241 150 8 chr11 143637997 143638130 -7145423 + L1ME LINE L1 5568 5719 -402 231 169 42 70 chr11 143638347 143638418 -7145135 + L1ME LINE L1 5727 5795 -326 1695 169 43 30 chr11 143638478 143638780 -7144773 - AluJo SINE Alu -4 308 3 439 272 102 24 chr11 143639320 143639566 -7143987 - L1ME3A LINE L1 -222 5948 5684 23 54 0 0 chr11 143639650 143639687 -7143866 + AT_rich Low_complexity Low_complexity 1 37 0 1928 172 0 0 chr11 143639755 143640051 -7143502 + AluSx SINE Alu 1 296 -16 252 286 71 12 chr11 143640051 143640135 -7143418 - L2 LINE L2 -30 3283 3195 328 304 105 39 chr11 143640139 143640320 -7143233 - L3 LINE CR1 -820 757 565 1629 189 14 14 chr11 143640342 143640638 -7142915 + AluJo SINE Alu 1 296 -16 29 70 0 0 chr11 143640824 143640881 -7142672 + AT_rich Low_complexity Low_complexity 1 57 0 829 192 40 13 chr11 143641577 143641728 -7141825 - FRAM SINE Alu -22 154 1 30 0 0 0 chr11 143641952 143641982 -7141571 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr11 143642478 143642527 -7141026 + AT_rich Low_complexity Low_complexity 1 49 0 493 240 17 86 chr11 143643115 143643290 -7140263 - MIR SINE MIR -92 170 8 1476 158 42 19 chr11 143645379 143645639 -7137914 + AluJo SINE Alu 1 266 -46 191 88 29 0 chr11 143645670 143645704 -7137849 + (TA)n Simple_repeat Simple_repeat 1 35 0 1666 114 118 11 chr11 143645804 143646076 -7137477 + AluSg SINE Alu 5 305 -5 877 175 0 12 chr11 143646199 143646359 -7137194 - FRAM SINE Alu -17 159 2 1504 245 145 54 chr11 143646568 143647274 -7136279 + HAL1 LINE L1 48 833 -1674 1996 115 34 3 chr11 143647274 143647570 -7135983 - AluSx SINE Alu -7 305 1 1504 245 145 54 chr11 143647570 143647643 -7135910 + HAL1 LINE L1 833 898 -1609 766 98 0 0 chr11 143647662 143647764 -7135789 - AluJ/FLAM SINE Alu -210 102 1 857 220 23 11 chr11 143648325 143648502 -7135051 - AluJb SINE Alu -22 290 112 300 222 16 0 chr11 143649040 143649103 -7134450 - L2 LINE L2 0 3272 3209 189 0 0 0 chr11 143649479 143649500 -7134053 + (A)n Simple_repeat Simple_repeat 1 21 0 842 231 31 90 chr11 143650871 143651011 -7132542 + MIR SINE MIR 1 148 -114 2143 102 0 34 chr11 143651011 143651329 -7132224 + AluSx SINE Alu 1 308 0 1706 187 3 19 chr11 143651337 143651647 -7131906 + AluJo SINE Alu 1 305 -7 842 231 31 90 chr11 143651647 143651752 -7131801 + MIR SINE MIR 155 241 -21 213 163 0 23 chr11 143651755 143651798 -7131755 + (TTA)n Simple_repeat Simple_repeat 3 44 0 932 168 78 93 chr11 143652272 143652594 -7130959 + MER33 DNA MER1_type 5 321 -3 1167 200 49 4 chr11 143652930 143653175 -7130378 + MIR SINE MIR 6 261 -1 285 203 159 0 chr11 143653192 143653261 -7130292 - MIR SINE MIR -109 153 74 1922 160 0 0 chr11 143653393 143653680 -7129873 + AluJb SINE Alu 1 287 -25 1574 158 28 75 chr11 143653883 143654243 -7129310 - MER2 DNA MER2_type 0 344 2 1979 134 41 7 chr11 143654310 143654602 -7128951 - AluSg SINE Alu -8 302 1 1319 171 100 11 chr11 143654670 143654951 -7128602 + MER2 DNA MER2_type 40 345 0 292 213 96 81 chr11 143654960 143655096 -7128457 + HAL1 LINE L1 2329 2466 -41 1977 125 39 0 chr11 143655096 143655377 -7128176 - AluSx SINE Alu -20 292 1 34 0 0 0 chr11 143655514 143655548 -7128005 + AT_rich Low_complexity Low_complexity 1 34 0 339 279 70 16 chr11 143656784 143656913 -7126640 + L1ME4a LINE L1 5974 6109 -12 216 364 121 0 chr11 143656964 143657063 -7126490 + L3 LINE CR1 1441 1551 -26 210 71 0 0 chr11 143657559 143657587 -7125966 + (CA)n Simple_repeat Simple_repeat 1 28 0 337 217 123 78 chr11 143657811 143658055 -7125498 - MER112 DNA MER1_type 0 256 2 558 106 80 9 chr11 143658087 143658200 -7125353 - MER2 DNA MER2_type -113 232 112 2308 96 7 0 chr11 143658204 143658506 -7125047 + AluSp SINE Alu 10 313 0 551 207 140 6 chr11 143659041 143659205 -7124348 + L1ME LINE L1 5617 5802 -319 716 197 0 8 chr11 143659461 143659583 -7123970 - FLAM_A SINE Alu -12 121 1 273 135 0 0 chr11 143659602 143659654 -7123899 + (TG)n Simple_repeat Simple_repeat 1 52 0 235 113 0 75 chr11 143659665 143659718 -7123835 - Alu SINE Alu -168 134 86 874 267 14 5 chr11 143659718 143659935 -7123618 - AluJo SINE Alu -92 220 2 2002 150 0 7 chr11 143660008 143660314 -7123239 + AluJb SINE Alu 1 304 -8 2381 66 3 38 chr11 143661746 143662064 -7121489 + AluSp SINE Alu 1 307 -6 868 195 0 56 chr11 143662682 143662877 -7120676 - MER5A DNA MER1_type 0 189 6 2309 126 6 6 chr11 143663003 143663369 -7120184 - MER47A DNA MER2_type 0 366 1 29 28 0 0 chr11 143664273 143664309 -7119244 + AT_rich Low_complexity Low_complexity 1 36 0 811 267 110 4 chr11 143664779 143665015 -7118538 + MIR SINE MIR 2 262 0 220 406 58 0 chr11 143665084 143665222 -7118331 + L2 LINE L2 2920 3065 -207 1621 153 48 44 chr11 143665223 143665254 -7118299 - AluJb SINE Alu -16 296 267 192 40 0 0 chr11 143665254 143665279 -7118274 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1621 153 48 44 chr11 143665279 143665542 -7118011 - AluJb SINE Alu -45 267 1 32 0 0 0 chr11 143667008 143667040 -7116513 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr11 143667908 143667929 -7115624 + AT_rich Low_complexity Low_complexity 1 21 0 2221 123 7 0 chr11 143668275 143668583 -7114970 + AluSg SINE Alu 1 310 0 2262 114 0 7 chr11 143668726 143669033 -7114520 - AluSq SINE Alu -8 305 1 1746 179 10 10 chr11 143669285 143669575 -7113978 + AluJo SINE Alu 1 290 -22 1829 164 3 7 chr11 143669709 143670007 -7113546 + AluJb SINE Alu 1 297 -15 2464 83 3 6 chr11 143670022 143670335 -7113218 + AluSp SINE Alu 1 312 -1 2003 145 10 0 chr11 143670344 143670654 -7112899 + AluSp SINE Alu 1 313 0 1875 163 13 0 chr11 143670664 143670971 -7112582 + AluJo SINE Alu 1 311 -1 210 178 123 14 chr11 143671281 143671354 -7112199 + MIR3 SINE MIR 105 185 -23 1804 183 7 10 chr11 143671464 143671770 -7111783 + AluJb SINE Alu 1 305 -7 497 257 102 45 chr11 143672017 143672133 -7111420 + MIR SINE MIR 2 110 -152 2323 108 0 0 chr11 143672133 143672438 -7111115 - AluSg SINE Alu -3 307 3 497 257 102 45 chr11 143672438 143672566 -7110987 + MIR SINE MIR 110 260 -2 1012 94 0 0 chr11 143672936 143673063 -7110490 - AluJb SINE Alu -179 133 7 2152 134 0 0 chr11 143673899 143674189 -7109364 - AluSx SINE Alu -22 290 1 1333 161 82 34 chr11 143674946 143675213 -7108340 + AluJo SINE Alu 30 309 -3 2440 73 0 13 chr11 143675769 143676070 -7107483 - AluSc SINE Alu -10 299 3 1353 139 61 61 chr11 143676162 143676457 -7107096 - L1MA5 LINE L1 -2 6298 6004 187 308 26 0 chr11 143678656 143678734 -7104819 - MER5A DNA MER1_type -22 167 88 335 186 116 12 chr11 143678761 143678847 -7104706 - HAL1b LINE L1 -241 1107 1013 2263 67 14 0 chr11 143678860 143679143 -7104410 + AluSc SINE Alu 1 287 -22 2412 87 0 0 chr11 143679250 143679549 -7104004 + AluSq SINE Alu 1 299 -14 1083 141 12 0 chr11 143679590 143679753 -7103800 + AluSg/x SINE Alu 137 301 -11 2381 74 0 7 chr11 143679854 143680152 -7103401 + AluSg SINE Alu 1 296 -14 1639 162 10 30 chr11 143680287 143680590 -7102963 + AluJo SINE Alu 3 299 -13 2210 117 3 0 chr11 143680592 143680892 -7102661 + AluSp SINE Alu 1 301 -12 460 256 145 81 chr11 143681342 143681968 -7101585 - L1MEd LINE L1 -760 1730 978 2020 115 20 3 chr11 143681968 143682263 -7101290 - AluJb SINE Alu -12 300 1 460 256 145 81 chr11 143682263 143682275 -7101278 - L1MEd LINE L1 -1512 978 968 450 288 36 0 chr11 143682677 143682816 -7100737 + L2 LINE L2 3129 3272 0 2316 90 0 7 chr11 143682982 143683281 -7100272 - AluSc SINE Alu -12 297 1 2107 114 0 4 chr11 143684172 143684452 -7099101 - AluSg SINE Alu -31 279 1 2360 93 0 16 chr11 143684890 143685200 -7098353 - AluSq SINE Alu -8 305 1 720 160 0 17 chr11 143685219 143685338 -7098215 - AluJb SINE Alu -194 118 2 288 0 0 0 chr11 143686109 143686141 -7097412 + (T)n Simple_repeat Simple_repeat 1 32 0 461 271 53 49 chr11 143686244 143686491 -7097062 + L1ME LINE L1 5573 5820 -301 251 248 59 126 chr11 143686788 143686895 -7096658 - L1ME LINE L1 -430 5691 5605 2436 77 0 3 chr11 143686895 143687208 -7096345 - AluSx SINE Alu 0 312 1 251 248 59 126 chr11 143687208 143687322 -7096231 - L1ME LINE L1 -516 5605 5485 1818 98 91 28 chr11 143688755 143689040 -7094513 - AluSq SINE Alu -10 303 1 261 0 0 0 chr11 143689093 143689122 -7094431 + (A)n Simple_repeat Simple_repeat 1 29 0 3301 123 62 0 chr11 143689533 143690029 -7093524 - MER1A DNA MER1_type 0 527 1 2191 125 3 6 chr11 143690214 143690525 -7093028 - AluSx SINE Alu -2 310 1 1250 228 68 45 chr11 143690841 143691063 -7092490 - L1MC5 LINE L1 -48 7913 7697 2336 92 0 0 chr11 143691063 143691367 -7092186 - AluY SINE Alu -7 304 1 1250 228 68 45 chr11 143691367 143691674 -7091879 - L1MC5 LINE L1 -264 7697 7372 2314 84 0 17 chr11 143691810 143692107 -7091446 - AluSx SINE Alu -20 292 1 267 333 39 6 chr11 143692346 143692526 -7091027 + L2 LINE L2 1789 1974 -1340 2526 58 0 0 chr11 143692530 143692823 -7090730 + AluY SINE Alu 1 293 -18 346 275 127 26 chr11 143693856 143694085 -7089468 + MIR SINE MIR 2 253 -9 228 286 65 0 chr11 143694086 143694163 -7089390 + MIR SINE MIR 166 247 -15 266 273 58 29 chr11 143694182 143694321 -7089232 - MIR3 SINE MIR -34 174 32 188 67 33 0 chr11 143694757 143694787 -7088766 + (TTATA)n Simple_repeat Simple_repeat 2 32 0 2138 120 0 10 chr11 143694855 143695155 -7088398 - AluSx SINE Alu -15 297 1 442 249 155 26 chr11 143695695 143695888 -7087665 + MIR SINE MIR 37 254 -8 189 315 130 22 chr11 143697051 143697143 -7086410 + MIR SINE MIR 21 122 -86 356 277 18 62 chr11 143697146 143697258 -7086295 + MER5A DNA MER1_type 26 136 -46 541 292 56 10 chr11 143697416 143697611 -7085942 - HAL1 LINE L1 -215 2292 2089 1023 182 57 2 chr11 143697616 143697884 -7085669 + MER2 DNA MER2_type 1 339 -6 960 137 13 7 chr11 143699167 143699320 -7084233 - AluSg/x SINE Alu -11 299 146 731 278 144 41 chr11 143701636 143702226 -7081327 + L1MC4a LINE L1 5283 5933 -1875 1968 113 46 7 chr11 143702523 143702805 -7080748 + AluSx SINE Alu 1 293 -19 910 212 93 18 chr11 143702916 143703142 -7080411 + MIR SINE MIR 15 257 -5 2608 39 7 3 chr11 143704848 143705158 -7078395 + AluY SINE Alu 1 311 0 1456 144 49 66 chr11 143706432 143706737 -7076816 + AluJo SINE Alu 1 300 -12 31 0 0 0 chr11 143708305 143708336 -7075217 + GC_rich Low_complexity Low_complexity 1 31 0 310 226 47 0 chr11 143708357 143708473 -7075080 + (CCGCT)n Simple_repeat Simple_repeat 1 121 0 351 181 0 75 chr11 143710446 143710570 -7072983 + AluY SINE Alu 207 301 0 355 295 47 32 chr11 143710584 143710730 -7072823 - L2 LINE L2 -8 3305 3154 1298 200 4 8 chr11 143710730 143710970 -7072583 + MER8 DNA MER2_type 1 239 0 355 295 47 32 chr11 143710970 143711013 -7072540 - L2 LINE L2 -159 3154 3113 498 311 90 57 chr11 143711195 143711760 -7071793 - L2 LINE L2 -449 2865 2282 192 360 23 0 chr11 143711760 143711846 -7071707 + MIR SINE MIR 23 110 -152 224 308 0 39 chr11 143711876 143712006 -7071547 - L2 LINE L2 -1034 2280 2156 211 325 46 59 chr11 143712072 143712343 -7071210 + L2 LINE L2 2075 2343 -971 2160 76 0 4 chr11 143712343 143712606 -7070947 - AluY SINE Alu -12 299 38 211 325 46 59 chr11 143712606 143712639 -7070914 + L2 LINE L2 2343 2375 -939 1560 187 173 7 chr11 143712865 143713288 -7070265 - LTR54B LTR ERV1 -2 496 4 447 286 14 20 chr11 143713289 143713436 -7070117 + MIR SINE MIR 6 151 -111 455 174 0 0 chr11 143713436 143713505 -7070048 + AluJb SINE Alu 197 265 -47 4121 185 53 5 chr11 143713527 143714262 -7069291 + MER21B LTR ERV1 62 831 -32 223 330 91 25 chr11 143714612 143714809 -7068744 + L2 LINE L2 2850 3059 -213 304 211 14 14 chr11 143715034 143715105 -7068448 - MER20 DNA MER1_type -145 74 4 188 35 35 0 chr11 143715138 143715167 -7068386 + (ATG)n Simple_repeat Simple_repeat 1 30 0 237 322 130 7 chr11 143715259 143715405 -7068148 + MIR3 SINE MIR 30 193 -15 1022 166 31 63 chr11 143715837 143715882 -7067671 - MER20 DNA MER1_type 0 219 174 2486 61 3 0 chr11 143715882 143715895 -7067658 - AluY SINE Alu -15 296 285 243 79 0 0 chr11 143715895 143715933 -7067620 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 2486 61 3 0 chr11 143715933 143716214 -7067339 - AluY SINE Alu -26 285 1 1022 166 31 63 chr11 143716214 143716391 -7067162 - MER20 DNA MER1_type -45 174 4 186 43 0 0 chr11 143716449 143716472 -7067081 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2753 59 0 0 chr11 143716474 143716812 -7066741 - L1PA8 LINE L1 -13 6159 5822 3690 175 120 19 chr11 143716869 143717980 -7065573 - L1MD1 LINE L1 -54 6188 4970 2321 99 142 11 chr11 143717982 143718356 -7065197 + MSTB2 LTR MaLR 4 426 -31 3178 172 28 16 chr11 143718366 143719363 -7064190 - HUERS-P3 LTR ERV1 -7804 1115 25 2062 222 53 46 chr11 143719398 143720006 -7063547 - LTR9 LTR ERV1 0 612 1 56 29 0 0 chr11 143720080 143720150 -7063403 + AT_rich Low_complexity Low_complexity 1 70 0 333 208 0 0 chr11 143720183 143720260 -7063293 - L1M4 LINE L1 -917 5229 5153 22 0 0 0 chr11 143720260 143720282 -7063271 + AT_rich Low_complexity Low_complexity 1 22 0 3038 196 2 2 chr11 143720305 143720902 -7062651 - L1M4 LINE L1 -1800 4346 3750 3190 116 40 69 chr11 143720904 143721482 -7062071 + LTR10A LTR ERV1 1 561 -48 1550 186 29 16 chr11 143721482 143721788 -7061765 + LTR10A-int LTR ERV1 9 318 -6331 * 11035 181 40 20 chr11 143721783 143722096 -7061457 + LTR10A-int LTR ERV1 477 782 -7003 2817 3 0 3 chr11 143722096 143722396 -7061157 - AluYa5 SINE Alu -12 299 1 11035 181 40 20 chr11 143722396 143724095 -7059458 + LTR10A-int LTR ERV1 782 2529 -5256 9599 173 21 34 chr11 143724093 143725825 -7057728 + LTR10A-int LTR ERV1 3249 4959 -2826 * 2658 120 0 8 chr11 143725805 143726179 -7057374 + Harlequin LTR ERV1 3384 3754 -3142 * 1456 92 5 0 chr11 143726179 143726363 -7057190 - AluSg SINE Alu -125 185 1 833 136 21 0 chr11 143726499 143726639 -7056914 + L1MB2 LINE L1 6029 6171 0 229 292 0 0 chr11 143726650 143726715 -7056838 + L1MC/D LINE L1 5846 5910 -1898 224 267 95 60 chr11 143727499 143727615 -7055938 - L3 LINE CR1 -2 1575 1456 680 161 303 0 chr11 143727625 143727731 -7055822 - MER3 DNA MER1_type 0 209 136 1937 172 49 64 chr11 143727731 143728153 -7055400 - LTR40b LTR ERVL -3 459 43 2174 132 0 0 chr11 143728153 143728449 -7055104 + AluSx SINE Alu 1 296 -16 1937 172 49 64 chr11 143728449 143728492 -7055061 - LTR40b LTR ERVL -419 43 1 680 161 303 0 chr11 143728492 143728540 -7055013 - MER3 DNA MER1_type -73 136 8 3978 98 28 0 chr11 143728647 143729186 -7054367 - MER41A LTR ERV1 0 554 1 531 197 136 7 chr11 143729485 143729602 -7053951 - MER5A DNA MER1_type -23 166 25 185 0 40 0 chr11 143729602 143729627 -7053926 + (CTG)n Simple_repeat Simple_repeat 1 26 0 531 197 136 7 chr11 143729627 143729656 -7053897 - MER5A DNA MER1_type -164 25 1 2144 133 0 3 chr11 143731741 143732049 -7051504 - AluSx SINE Alu -5 307 1 205 247 284 0 chr11 143732191 143732272 -7051281 + MER5A DNA MER1_type 79 182 -7 3308 109 58 12 chr11 143732283 143732786 -7050767 - MER1A DNA MER1_type 0 527 2 244 217 61 35 chr11 143733040 143733155 -7050398 - MIR3 SINE MIR -79 129 12 315 343 36 24 chr11 143734925 143735091 -7048462 - L3 LINE CR1 -1 1576 1409 2203 115 0 13 chr11 143735988 143736300 -7047253 + AluSx SINE Alu 1 308 -4 2311 83 3 7 chr11 143738560 143738849 -7044704 - AluSg SINE Alu -22 288 1 2533 184 4 25 chr11 143740051 143740539 -7043014 - L1 LINE L1 -1887 5678 5201 7256 53 2 0 chr11 143740539 143741760 -7041793 - L1PA5 LINE L1 -3 6151 4876 5981 67 45 62 chr11 143741760 143742730 -7040823 - SVA Other Other 0 1386 433 651 23 8 38 chr11 143742743 143742874 -7040679 - SVA Other Other -592 794 668 5475 82 26 63 chr11 143742898 143744038 -7039515 - SVA Other Other -518 868 57 261 0 0 0 chr11 143744038 143744067 -7039486 + (GGGAGA)n Simple_repeat Simple_repeat 1 29 0 37427 72 8 4 chr11 143744068 143748940 -7034613 - L1PA5 LINE L1 -1257 4889 1 4873 242 46 57 chr11 143748935 143749559 -7033994 - L1 LINE L1 -2344 5221 4591 * 2306 96 0 0 chr11 143749559 143749860 -7033693 + AluY SINE Alu 1 301 -10 4873 242 46 57 chr11 143749860 143752100 -7031453 - L1 LINE L1 -2974 4591 2389 1041 166 17 0 chr11 143752100 143752275 -7031278 - AluSg/x SINE Alu -17 295 118 8950 166 30 6 chr11 143752276 143754303 -7029250 + L1P3 LINE L1 3646 5710 -462 4094 127 10 16 chr11 143754356 143754844 -7028709 + L1MA2 LINE L1 5634 6118 -186 1866 119 20 34 chr11 143754844 143755138 -7028415 + AluSx SINE Alu 1 290 -22 4094 127 10 16 chr11 143755138 143755324 -7028229 + L1MA2 LINE L1 6118 6304 0 456 333 30 0 chr11 143755350 143755587 -7027966 + HAL1 LINE L1 1332 1575 -932 3358 65 32 2 chr11 143755732 143756122 -7027431 + MLT2A1 LTR ERVL 1 407 -37 612 40 0 0 chr11 143756122 143756197 -7027356 + (TA)n Simple_repeat Simple_repeat 2 76 0 3358 65 32 2 chr11 143756197 143756237 -7027316 + MLT2A1 LTR ERVL 407 444 0 5783 88 5 9 chr11 143756262 143757062 -7026491 - L1PA10 LINE L1 0 6168 5372 * 10572 127 12 7 chr11 143757031 143758718 -7024835 - L1PA10 LINE L1 -1777 4369 2673 207 0 0 0 chr11 143758730 143758753 -7024800 + (TG)n Simple_repeat Simple_repeat 1 23 0 455 314 97 19 chr11 143759066 143759375 -7024178 + L1MC/D LINE L1 5256 5588 -2220 7540 43 4 0 chr11 143759376 143760301 -7023252 - L1PA5 LINE L1 -3092 3770 2841 18866 45 0 11 chr11 143760301 143763383 -7020170 + L1PA5 LINE L1 3777 6863 -7 7540 43 4 0 chr11 143763383 143763397 -7020156 - L1PBa LINE L1 -4021 2841 2829 460 264 34 7 chr11 143763792 143763940 -7019613 - Charlie4 DNA MER1_type -1776 185 34 277 287 0 11 chr11 143764199 143764286 -7019267 + MIR SINE MIR 171 256 -6 602 264 0 3 chr11 143765323 143765472 -7018081 - L1PB4 LINE L1 0 6166 6021 216 289 48 29 chr11 143766316 143766420 -7017133 + L2 LINE L2 3208 3313 0 359 313 35 7 chr11 143766442 143766586 -7016967 + MIR SINE MIR 10 157 -105 270 277 48 0 chr11 143767385 143767468 -7016085 + MIR SINE MIR 103 189 -73 1063 116 16 11 chr11 143768415 143768604 -7014949 - L1MA4 LINE L1 0 6300 6111 1552 156 4 11 chr11 143768604 143768867 -7014686 + L1MA4 LINE L1 5772 6032 -268 1390 204 83 58 chr11 143770068 143770466 -7013087 + MER70B LTR ERVL 158 565 -13 12508 169 25 17 chr11 143770594 143770743 -7012810 - L1MA2 LINE L1 0 7723 7577 2325 63 7 13 chr11 143770743 143771044 -7012509 - AluY SINE Alu -12 299 1 12508 169 25 17 chr11 143771044 143774705 -7008848 - L1MA2 LINE L1 -146 7577 3884 2031 122 83 13 chr11 143774683 143775068 -7008485 - L1MA2 LINE L1 -4721 2844 2433 * 1583 109 7 4 chr11 143775595 143775870 -7007683 - L1MA2 LINE L1 -5098 2467 2192 6967 120 87 44 chr11 143775873 143777160 -7006393 - THE1C-int LTR MaLR -238 1342 1 2486 108 13 29 chr11 143777160 143777541 -7006012 - THE1C LTR MaLR 0 375 1 6357 175 49 20 chr11 143777544 143779290 -7004263 - L1ME LINE L1 -2354 5211 3411 593 334 81 13 chr11 143779292 143779675 -7003878 - L1M4 LINE L1 -2997 4109 3701 744 178 56 6 chr11 143779959 143780139 -7003414 + L1MA8 LINE L1 6017 6205 -86 2623 251 102 26 chr11 143780260 143782560 -7000993 - L1M4 LINE L1 -4089 3017 857 1411 195 0 4 chr11 143782610 143782882 -7000671 - L1M4 LINE L1 -6753 277 7 307 217 65 7 chr11 143782889 143783027 -7000526 - L1ME LINE L1 -5212 2343 2198 1209 122 0 6 chr11 143783417 143783581 -6999972 + AluSg/x SINE Alu 123 285 -25 2951 220 91 66 chr11 143783905 143785085 -6998468 - L1MC4 LINE L1 -143 7899 6691 2317 75 54 0 chr11 143785103 143785398 -6998155 + AluY SINE Alu 1 311 0 267 82 213 16 chr11 143785876 143785937 -6997616 + L1PB4 LINE L1 6068 6140 -16 216 0 0 0 chr11 143785937 143785961 -6997592 + (CA)n Simple_repeat Simple_repeat 1 24 0 1823 176 11 0 chr11 143785963 143786247 -6997306 - AluJb SINE Alu -25 287 1 24 67 0 0 chr11 143786252 143786297 -6997256 + AT_rich Low_complexity Low_complexity 1 45 0 2657 180 19 28 chr11 143786317 143786884 -6996669 + L1M1 LINE L1 12 573 -6992 29 78 0 0 chr11 143787052 143787116 -6996437 + AT_rich Low_complexity Low_complexity 1 64 0 393 183 110 0 chr11 143787510 143787592 -6995961 - MSTD LTR MaLR 0 396 306 1227 257 78 16 chr11 143787595 143788226 -6995327 - L1MEc LINE L1 -3315 2900 2231 529 331 66 44 chr11 143788230 143788595 -6994958 - L1MEc LINE L1 -4146 2250 1878 6930 107 12 2 chr11 143789439 143790700 -6992853 - L1MA2 LINE L1 0 7723 6451 15264 159 22 11 chr11 143790801 143795320 -6988233 - L1MA2 LINE L1 -1947 5618 1044 547 238 91 0 chr11 143795523 143795666 -6987887 - MIR SINE MIR -1 261 106 28469 123 13 53 chr11 143795681 143802129 -6981424 + L1PA8 LINE L1 1 6172 0 689 184 66 7 chr11 143802135 143802287 -6981266 - MLT1B LTR MaLR -229 161 1 235 229 38 51 chr11 143802293 143802450 -6981103 + L1MC5 LINE L1 7640 7794 -167 240 208 21 0 chr11 143802451 143802499 -6981054 + GA-rich Low_complexity Low_complexity 1 49 0 310 157 67 22 chr11 143802521 143802610 -6980943 + L1MC5 LINE L1 7832 7924 -37 251 348 51 17 chr11 143802625 143802743 -6980810 - MIR SINE MIR -139 123 2 269 250 60 10 chr11 143803152 143803252 -6980301 + L1MB1 LINE L1 5987 6091 -77 * 1251 192 17 32 chr11 143803246 143803590 -6979963 - L1MEc LINE L1 -4039 2357 2019 2050 215 33 39 chr11 143803590 143804134 -6979419 + MER74A LTR ERVL 1 541 -17 1942 283 60 11 chr11 143804158 143805025 -6978528 - L1MEc LINE L1 -4375 2021 1113 274 313 97 50 chr11 143805240 143805518 -6978035 - L3 LINE CR1 -6 1571 1281 319 344 118 33 chr11 143805528 143805798 -6977755 - L2 LINE L2 -86 3186 2894 2058 184 72 27 chr11 143805951 143806434 -6977119 + MLT1D LTR MaLR 1 505 0 564 190 56 97 chr11 143806612 143806807 -6976746 + MIR SINE MIR 43 229 -33 2086 151 3 0 chr11 143807505 143807809 -6975744 + AluSq SINE Alu 1 305 -8 2393 179 19 5 chr11 143808027 143808447 -6975106 - MSTB LTR MaLR 0 426 1 5768 198 20 22 chr11 143808447 143809674 -6973879 - MLT1B-int LTR MaLR 0 1651 423 216 0 0 0 chr11 143809674 143809698 -6973855 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2173 95 11 0 chr11 143809700 143809974 -6973579 - AluSc SINE Alu -32 277 1 5768 198 20 22 chr11 143809974 143810075 -6973478 - MLT1B-int LTR MaLR -1107 544 444 900 270 154 84 chr11 143810183 143811409 -6972144 - HAL1 LINE L1 -763 1744 433 1420 127 0 28 chr11 143811615 143811827 -6971726 - AluSx SINE Alu -17 293 88 559 143 44 0 chr11 143811891 143811982 -6971571 - AluSx SINE Alu -217 95 1 1007 118 85 5 chr11 143812122 143812334 -6971219 - Charlie5 DNA MER1_type -27 2585 2357 768 220 31 55 chr11 143813098 143813353 -6970200 - L1ME3A LINE L1 -3 6167 5919 224 303 193 18 chr11 143814204 143814313 -6969240 - MIR SINE MIR -35 227 100 312 294 81 30 chr11 143814458 143814655 -6968898 + L2 LINE L2 3106 3312 -1 * 381 250 9 132 chr11 143814654 143814740 -6968813 + MIR SINE MIR 57 103 -159 2395 86 0 13 chr11 143814740 143815054 -6968499 - AluSx SINE Alu -2 310 1 381 250 9 132 chr11 143815054 143815179 -6968374 + MIR SINE MIR 103 242 -20 200 247 82 47 chr11 143815203 143815288 -6968265 - MIR SINE MIR -57 205 118 2047 218 140 35 chr11 143815685 143816378 -6967175 - L1ME2 LINE L1 -10 6154 5389 593 179 26 0 chr11 143816667 143816784 -6966769 + MER3 DNA MER1_type 3 122 -87 1899 224 36 25 chr11 143816952 143817505 -6966048 - L1M4 LINE L1 -5593 949 391 1648 166 17 17 chr11 143817507 143817809 -6965744 - AluSx SINE Alu -10 302 1 715 158 0 17 chr11 143817828 143817948 -6965605 - AluJb SINE Alu -194 118 1 246 32 0 0 chr11 143818718 143818749 -6964804 + (T)n Simple_repeat Simple_repeat 1 31 0 865 102 47 0 chr11 143868811 143868938 -6914615 - AluSq/x SINE Alu -180 133 1 3104 109 14 16 chr11 143868940 143869426 -6914127 - L1MA2 LINE L1 -186 6118 5634 7889 163 26 7 chr11 143869566 143871506 -6912047 - L1MA2 LINE L1 -680 5625 3646 1040 166 17 0 chr11 143871507 143871682 -6911871 + AluSg/x SINE Alu 118 295 -17 1695 268 26 35 chr11 143871696 143872319 -6911234 + L1M4c LINE L1 1148 1764 -4620 450 0 0 0 chr11 143872322 143872372 -6911181 + (A)n Simple_repeat Simple_repeat 1 50 0 1051 129 16 27 chr11 143872529 143872699 -6910854 + AluSg/x SINE Alu 119 288 -22 1004 177 0 0 chr11 143872699 143872885 -6910668 + L1MA2 LINE L1 6119 6304 0 1051 129 16 27 chr11 143872885 143872900 -6910653 + AluSg/x SINE Alu 288 302 -8 474 333 30 0 chr11 143872911 143873148 -6910405 + HAL1 LINE L1 1332 1575 -932 3462 63 42 5 chr11 143873293 143873680 -6909873 + MLT2A1 LTR ERVL 1 407 -37 231 36 0 0 chr11 143873680 143873708 -6909845 + (TA)n Simple_repeat Simple_repeat 1 28 0 3462 63 42 5 chr11 143873708 143873748 -6909805 + MLT2A1 LTR ERVL 407 444 0 5797 88 5 9 chr11 143873772 143874572 -6908981 - L1PA10 LINE L1 0 6168 5372 * 19060 174 22 37 chr11 143874541 143876239 -6907314 - L1P3 LINE L1 -1777 4684 2963 327 25 0 0 chr11 143876239 143876279 -6907274 + (TG)n Simple_repeat Simple_repeat 2 41 0 19060 174 22 37 chr11 143876279 143876607 -6906946 - L1P3 LINE L1 -3498 2963 2632 2557 121 36 8 chr11 143876607 143876971 -6906582 + THE1C LTR MaLR 2 375 0 19060 174 22 37 chr11 143876971 143879677 -6903876 - L1P3 LINE L1 -3829 2632 7 409 312 50 32 chr11 143879686 143879904 -6903649 + L1 LINE L1 4308 4529 -1617 581 207 96 82 chr11 143880037 143880078 -6903475 - LTR33A LTR ERVL 0 523 484 3063 131 16 47 chr11 143880078 143880451 -6903102 + L1PB3 LINE L1 5661 6015 -139 2184 115 13 16 chr11 143880451 143880764 -6902789 + AluSx SINE Alu 1 312 0 3063 131 16 47 chr11 143880764 143880900 -6902653 + L1PB3 LINE L1 6015 6154 0 581 207 96 82 chr11 143880900 143881138 -6902415 - LTR33A LTR ERVL -39 484 240 276 212 30 40 chr11 143881411 143881481 -6902072 + L1 LINE L1 4723 4793 -1353 2078 219 0 3 chr11 143881481 143881847 -6901706 - MLT1A1 LTR MaLR 0 365 1 276 212 30 40 chr11 143881847 143881875 -6901678 + L1 LINE L1 4793 4820 -1326 2299 71 3 0 chr11 143881881 143882194 -6901359 - AluY SINE Alu 0 314 1 2645 144 28 23 chr11 143882283 143882714 -6900839 + Tigger2a DNA MER2_type 2 434 0 428 192 14 0 chr11 143882714 143882787 -6900766 + MER21B LTR ERV1 16 89 -774 2229 265 43 43 chr11 143882881 143883601 -6899952 + MER21B LTR ERV1 93 812 -51 268 324 7 15 chr11 143883662 143883798 -6899755 + L1P LINE L1 4877 5011 -1135 2347 119 76 17 chr11 143883922 143884266 -6899287 + THE1B LTR MaLR 1 364 0 2414 151 47 63 chr11 143884592 143885101 -6898452 - MLT1D LTR MaLR 0 505 5 387 0 0 0 chr11 143886193 143886236 -6897317 + (A)n Simple_repeat Simple_repeat 1 43 0 4999 232 48 53 chr11 143886236 143887795 -6895758 + L1M1 LINE L1 3045 4595 -2970 2287 96 0 0 chr11 143887795 143888096 -6895457 - AluY SINE Alu -10 301 1 4999 232 48 53 chr11 143888096 143888720 -6894833 + L1M1 LINE L1 4595 5221 -2344 * 40586 68 15 6 chr11 143888715 143893587 -6889966 + L1PA5 LINE L1 1 4827 -1327 261 0 0 0 chr11 143893587 143893616 -6889937 + (TCTCCC)n Simple_repeat Simple_repeat 1 29 0 6218 94 15 56 chr11 143893616 143895169 -6888384 + SVA Other Other 57 1386 0 40586 68 15 6 chr11 143895169 143896391 -6887162 + L1PA5 LINE L1 4826 6153 -1 3610 166 7 71 chr11 143896383 143897075 -6886478 + L1M1 LINE L1 5194 5828 -1737 * 2829 16 0 0 chr11 143897075 143897381 -6886172 - AluYa5 SINE Alu -5 306 1 3610 166 7 71 chr11 143897381 143897501 -6886052 + L1M1 LINE L1 5828 5954 -1611 1444 92 5 0 chr11 143897510 143897694 -6885859 + AluSg SINE Alu 1 185 -125 2645 120 0 8 chr11 143897694 143898068 -6885485 - Harlequin LTR ERV1 -3142 3754 3384 * 9614 173 21 34 chr11 143898048 143899780 -6883773 - Harlequin LTR ERV1 -2826 4959 3249 * 11024 181 40 20 chr11 143899778 143901477 -6882076 - Harlequin LTR ERV1 -5256 2529 782 2750 3 0 7 chr11 143901477 143901778 -6881775 + AluYa5 SINE Alu 1 299 -12 11024 181 40 20 chr11 143901778 143902091 -6881462 - Harlequin LTR ERV1 -7003 782 477 1532 186 29 16 chr11 143902086 143902392 -6881161 - Harlequin LTR ERV1 -6331 318 9 * 3214 114 40 69 chr11 143902392 143902970 -6880583 - LTR10A LTR ERV1 -48 561 1 3082 196 2 2 chr11 143902972 143903569 -6879984 + L1M4 LINE L1 3750 4346 -1800 22 0 0 0 chr11 143903592 143903614 -6879939 + AT_rich Low_complexity Low_complexity 1 22 0 341 208 0 0 chr11 143903614 143903691 -6879862 + L1M4 LINE L1 5153 5229 -917 56 29 0 0 chr11 143903724 143903794 -6879759 + AT_rich Low_complexity Low_complexity 1 70 0 2237 222 53 46 chr11 143903868 143904476 -6879077 + LTR9 LTR ERV1 1 612 0 3162 172 28 16 chr11 143904511 143905508 -6878045 + HUERS-P3 LTR ERV1 25 1115 -7804 2319 99 142 11 chr11 143905518 143905892 -6877661 - MSTB2 LTR MaLR -31 426 4 3685 178 120 19 chr11 143905894 143907005 -6876548 + L1MD1 LINE L1 4970 6188 -54 2884 57 0 0 chr11 143907064 143907425 -6876128 + L1PA8 LINE L1 5824 6184 0 1099 166 31 63 chr11 143907483 143907660 -6875893 + MER20 DNA MER1_type 4 174 -45 2459 61 3 0 chr11 143907660 143907941 -6875612 + AluY SINE Alu 1 285 -26 243 79 0 0 chr11 143907941 143907979 -6875574 + (TTAAA)n Simple_repeat Simple_repeat 3 40 0 2459 61 3 0 chr11 143907979 143907992 -6875561 + AluY SINE Alu 285 296 -15 1099 166 31 63 chr11 143907992 143908037 -6875516 + MER20 DNA MER1_type 174 219 0 300 303 108 32 chr11 143908461 143908646 -6874907 - MIR3 SINE MIR -7 201 3 188 35 35 0 chr11 143908707 143908736 -6874817 + (CAT)n Simple_repeat Simple_repeat 1 30 0 303 211 14 14 chr11 143908769 143908840 -6874713 + MER20 DNA MER1_type 4 74 -145 274 338 133 36 chr11 143909058 143909444 -6874109 - L2 LINE L2 -208 3064 2637 199 315 87 0 chr11 143909487 143909579 -6873974 - MIR SINE MIR -1 261 162 4102 185 53 5 chr11 143909612 143910347 -6873206 - MER21B LTR ERV1 -32 831 62 487 174 0 0 chr11 143910369 143910438 -6873115 - AluJb SINE Alu -47 265 197 494 286 14 20 chr11 143910438 143910585 -6872968 - MIR SINE MIR -111 151 6 1573 196 170 5 chr11 143910586 143911009 -6872544 + LTR54B LTR ERV1 4 496 -2 287 325 46 59 chr11 143911235 143911268 -6872285 - L2 LINE L2 -939 2375 2343 2141 76 0 4 chr11 143911268 143911531 -6872022 + AluY SINE Alu 38 299 -12 287 325 46 59 chr11 143911531 143911802 -6871751 - L2 LINE L2 -971 2343 2075 257 308 0 39 chr11 143911868 143911998 -6871555 + L2 LINE L2 2156 2280 -1034 220 360 23 0 chr11 143912028 143912114 -6871439 - MIR SINE MIR -152 110 23 617 320 127 52 chr11 143912114 143912904 -6870649 + L2 LINE L2 2282 3130 -142 1399 200 4 8 chr11 143912904 143913144 -6870409 - MER8 DNA MER2_type 0 239 1 617 320 127 52 chr11 143913144 143913290 -6870263 + L2 LINE L2 3130 3264 -8 2219 80 0 20 chr11 143913304 143913634 -6869919 - AluY SINE Alu 0 311 1 312 333 39 6 chr11 143913638 143913818 -6869735 - L2 LINE L2 -1340 1974 1789 2286 84 0 17 chr11 143914056 143914353 -6869200 + AluSx SINE Alu 1 292 -20 1292 228 68 45 chr11 143914489 143914796 -6868757 + L1MC5 LINE L1 7372 7697 -264 2308 92 0 0 chr11 143914796 143915100 -6868453 + AluY SINE Alu 1 304 -7 1292 228 68 45 chr11 143915100 143915322 -6868231 + L1MC5 LINE L1 7697 7913 -48 2177 125 3 6 chr11 143915638 143915949 -6867604 + AluSx SINE Alu 1 310 -2 3484 123 62 0 chr11 143916134 143916630 -6866923 + MER1A DNA MER1_type 1 527 0 252 0 0 0 chr11 143917041 143917069 -6866484 + (T)n Simple_repeat Simple_repeat 1 28 0 1794 99 92 28 chr11 143918355 143918639 -6864914 - AluSq SINE Alu -11 302 1 252 0 0 0 chr11 143918692 143918720 -6864833 + (A)n Simple_repeat Simple_repeat 1 28 0 25 0 0 0 chr11 143918900 143918925 -6864628 + GC_rich Low_complexity Low_complexity 1 25 0 252 0 0 0 chr11 143918947 143918975 -6864578 + (A)n Simple_repeat Simple_repeat 1 28 0 2274 119 0 3 chr11 143918981 143919293 -6864260 + AluJo SINE Alu 2 312 0 823 295 115 35 chr11 143919307 143919912 -6863641 + L1MC4a LINE L1 5175 5335 -811 1694 144 22 4 chr11 143919912 143920189 -6863364 + L1MB2 LINE L1 5890 6171 0 823 295 115 35 chr11 143920189 143920265 -6863288 + L1MC4a LINE L1 5335 5403 -743 255 267 95 60 chr11 143921049 143921165 -6862388 - L3 LINE CR1 -2 1575 1456 680 161 303 0 chr11 143921175 143921281 -6862272 - MER3 DNA MER1_type 0 209 136 1937 172 49 64 chr11 143921281 143921703 -6861850 - LTR40b LTR ERVL -3 459 43 2174 132 0 0 chr11 143921703 143921999 -6861554 + AluSx SINE Alu 1 296 -16 1937 172 49 64 chr11 143921999 143922042 -6861511 - LTR40b LTR ERVL -419 43 1 680 161 303 0 chr11 143922042 143922090 -6861463 - MER3 DNA MER1_type -73 136 8 3926 98 30 0 chr11 143922197 143922735 -6860818 - MER41A LTR ERV1 0 554 1 531 197 136 7 chr11 143923034 143923151 -6860402 - MER5A DNA MER1_type -23 166 25 185 0 40 0 chr11 143923151 143923176 -6860377 + (CTG)n Simple_repeat Simple_repeat 1 26 0 531 197 136 7 chr11 143923176 143923205 -6860348 - MER5A DNA MER1_type -164 25 1 2144 133 0 3 chr11 143925291 143925599 -6857954 - AluSx SINE Alu -5 307 1 205 247 284 0 chr11 143925741 143925822 -6857731 + MER5A DNA MER1_type 79 182 -7 3308 109 58 12 chr11 143925833 143926336 -6857217 - MER1A DNA MER1_type 0 527 2 244 217 61 35 chr11 143926590 143926705 -6856848 - MIR3 SINE MIR -79 129 12 315 343 36 24 chr11 143928475 143928641 -6854912 - L3 LINE CR1 -1 1576 1409 2203 115 0 13 chr11 143929538 143929850 -6853703 + AluSx SINE Alu 1 308 -4 2311 83 3 7 chr11 143932110 143932399 -6851154 - AluSg SINE Alu -22 288 1 2214 110 0 0 chr11 143934485 143934776 -6848777 - AluSc SINE Alu -18 291 1 402 21 0 0 chr11 143935431 143935478 -6848075 + (TG)n Simple_repeat Simple_repeat 1 47 0 2442 90 0 0 chr11 143935929 143936230 -6847323 - AluSx SINE Alu -11 301 1 1019 164 90 0 chr11 143936402 143936591 -6846962 - MER3 DNA MER1_type -1 208 3 2335 217 140 35 chr11 143936877 143937572 -6845981 + L1ME2 LINE L1 5387 6154 -10 316 260 10 118 chr11 143938086 143938203 -6845350 - MIR SINE MIR -24 238 151 2422 86 0 13 chr11 143938203 143938517 -6845036 + AluSx SINE Alu 1 310 -2 316 260 10 118 chr11 143938517 143938603 -6844950 - MIR SINE MIR -111 151 57 259 308 41 30 chr11 143938602 143938771 -6844782 - L2 LINE L2 -1 3312 3142 * 191 303 193 18 chr11 143938944 143939053 -6844500 + MIR SINE MIR 100 227 -35 860 220 31 55 chr11 143939904 143940159 -6843394 + L1ME3A LINE L1 5919 6167 -3 1094 110 92 5 chr11 143940917 143941135 -6842418 + Charlie5 DNA MER1_type 2349 2585 -27 558 144 44 0 chr11 143941276 143941366 -6842187 + AluSx SINE Alu 2 95 -218 1424 127 0 28 chr11 143941430 143941642 -6841911 + AluSx SINE Alu 90 295 -17 1373 264 181 79 chr11 143941848 143943164 -6840389 + HAL1 LINE L1 433 1882 -625 2494 67 0 3 chr11 143943208 143943508 -6840045 - AluY SINE Alu -12 299 1 1023 182 57 2 chr11 143943703 143943971 -6839582 - MER2 DNA MER2_type -6 339 1 541 292 56 10 chr11 143943976 143944171 -6839382 + HAL1 LINE L1 2089 2292 -215 356 277 18 62 chr11 143944329 143944441 -6839112 - MER5A DNA MER1_type -46 136 26 189 315 130 22 chr11 143944444 143944536 -6839017 - MIR SINE MIR -86 122 21 442 249 155 26 chr11 143945698 143945891 -6837662 - MIR SINE MIR -8 254 37 2089 114 7 10 chr11 143946431 143946729 -6836824 + AluSx SINE Alu 1 297 -15 188 67 33 0 chr11 143946797 143946827 -6836726 + (TATAA)n Simple_repeat Simple_repeat 2 32 0 266 273 58 29 chr11 143947263 143947402 -6836151 + MIR3 SINE MIR 32 174 -34 228 286 65 0 chr11 143947421 143947498 -6836055 - MIR SINE MIR -15 247 166 346 275 127 26 chr11 143947499 143947728 -6835825 - MIR SINE MIR -9 253 2 2649 34 0 0 chr11 143948761 143949054 -6834499 - AluY SINE Alu -18 293 1 2080 104 17 7 chr11 143949540 143949837 -6833716 - AluSx SINE Alu -12 300 1 1211 114 24 0 chr11 143949894 143950060 -6833493 + AluSg/x SINE Alu 127 296 -14 923 93 101 0 chr11 143953331 143953470 -6830083 - AluJb SINE Alu -12 300 148 2515 163 21 6 chr11 143953573 143954111 -6829442 + HUERS-P3 LTR ERV1 487 1115 -7804 919 78 85 20 chr11 143954121 143954274 -6829279 - MSTB2 LTR MaLR -31 426 264 312 191 0 15 chr11 143954783 143954851 -6828702 + L1 LINE L1 4280 4346 -1800 22 0 0 0 chr11 143954874 143954896 -6828657 + AT_rich Low_complexity Low_complexity 1 22 0 319 221 0 0 chr11 143954896 143954973 -6828580 + L1ME4a LINE L1 5153 5229 -917 56 29 0 0 chr11 143955006 143955076 -6828477 + AT_rich Low_complexity Low_complexity 1 70 0 2671 48 0 0 chr11 143955268 143955579 -6827974 - AluY SINE Alu 0 311 1 390 301 16 0 chr11 143955711 143955834 -6827719 - L2 LINE L2 -1 3312 3188 592 114 34 0 chr11 143955856 143955944 -6827609 - L1MC1 LINE L1 0 6333 6243 186 43 0 0 chr11 143956003 143956026 -6827527 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2377 89 0 0 chr11 143957439 143957743 -6825810 - AluSq SINE Alu -9 304 1 182 231 56 65 chr11 143958528 143958636 -6824917 + L2 LINE L2 3207 3313 0 1967 142 7 10 chr11 143958713 143959016 -6824537 + AluSx SINE Alu 1 302 -10 1826 159 3 7 chr11 143959123 143959413 -6824140 + AluJo SINE Alu 1 289 -23 257 317 164 28 chr11 143959583 143959936 -6823617 - MARNA DNA Mariner -11 575 175 216 205 0 0 chr11 143960031 143960070 -6823483 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 1924 132 0 7 chr11 143963107 143963388 -6820165 - AluJo SINE Alu -33 279 1 437 298 32 13 chr11 143964825 143964983 -6818570 + L2 LINE L2 3151 3311 -2 751 239 99 104 chr11 143967094 143967366 -6816187 + L1ME4a LINE L1 5561 5833 -288 351 0 0 0 chr11 143967366 143967405 -6816148 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 751 239 99 104 chr11 143967405 143967450 -6816103 + L1ME4a LINE L1 5833 5877 -244 2131 123 10 0 chr11 143967450 143967742 -6815811 + AluSx SINE Alu 1 295 -17 751 239 99 104 chr11 143967742 143967970 -6815583 + L1ME4a LINE L1 5877 6104 -17 21 0 0 0 chr11 143968404 143968425 -6815128 + AT_rich Low_complexity Low_complexity 1 21 0 241 196 0 20 chr11 143970090 143970141 -6813412 + L2 LINE L2 3213 3262 -10 248 275 14 0 chr11 143970603 143970672 -6812881 + L2 LINE L2 3231 3300 -13 344 269 35 28 chr11 143970672 143970817 -6812736 - L1MC/D LINE L1 -2202 5606 5461 1856 296 111 31 chr11 143970880 143971157 -6812396 + L2 LINE L2 1713 1966 -1348 2273 118 0 9 chr11 143971157 143971472 -6812081 - AluSx SINE Alu 0 312 1 1856 296 111 31 chr11 143971472 143972282 -6811271 + L2 LINE L2 1966 2887 -427 615 170 52 37 chr11 143972352 143972487 -6811066 + MIR SINE MIR 126 262 0 285 212 47 24 chr11 143973378 143973463 -6810090 + MIR SINE MIR 32 118 -90 222 118 0 0 chr11 143974257 143974291 -6809262 + (T)n Simple_repeat Simple_repeat 1 34 0 41 21 0 0 chr11 143974296 143974344 -6809209 + GC_rich Low_complexity Low_complexity 1 48 0 2084 97 7 0 chr11 143974446 143974735 -6808818 - AluSg SINE Alu -19 291 1 647 293 46 100 chr11 143974766 143975447 -6808106 + L2 LINE L2 2600 3252 -20 2059 129 3 3 chr11 143975448 143975751 -6807802 - AluSx SINE Alu -9 303 1 1292 143 10 5 chr11 143975789 143975998 -6807555 - AluSq SINE Alu -25 288 79 599 244 57 43 chr11 143976014 143976223 -6807330 - MIR SINE MIR 0 262 51 2712 125 7 38 chr11 143977034 143977400 -6806153 - L1PB2 LINE L1 -6 6145 5769 2188 104 3 0 chr11 143977400 143977707 -6805846 - AluSp SINE Alu -5 308 1 2712 125 7 38 chr11 143977707 143977758 -6805795 - L1PB2 LINE L1 -382 5769 5740 865 167 0 0 chr11 143977758 143977884 -6805669 - FLAM_C SINE Alu -7 126 1 2712 125 7 38 chr11 143977884 143977914 -6805639 - L1PB2 LINE L1 -411 5740 5711 354 291 177 11 chr11 143978418 143978593 -6804960 - MIR SINE MIR -55 207 4 285 51 0 0 chr11 143980153 143980192 -6803361 + (GA)n Simple_repeat Simple_repeat 1 39 0 205 371 120 0 chr11 143981891 143982058 -6801495 - MIR SINE MIR -20 242 56 1530 182 0 0 chr11 143984514 143984761 -6798792 + MLT1A1 LTR MaLR 1 247 -118 444 290 199 18 chr11 143986130 143986351 -6797202 - MIR SINE MIR 0 262 2 1943 116 9 61 chr11 143986369 143986698 -6796855 - AluSx SINE Alu 0 312 1 1732 166 115 53 chr11 143986706 143986897 -6796656 - Charlie4a DNA MER1_type -1457 504 326 2273 100 3 0 chr11 143986897 143987206 -6796347 + AluSq SINE Alu 2 311 -2 1732 166 115 53 chr11 143987206 143987305 -6796248 - Charlie4a DNA MER1_type -1635 326 235 5401 63 15 1 chr11 143987305 143987989 -6795564 - L1PA7 LINE L1 0 6154 5462 1732 166 115 53 chr11 143987989 143988166 -6795387 - Charlie4a DNA MER1_type -1726 235 7 299 146 0 0 chr11 143988341 143988389 -6795164 + MER53 DNA DNA 3 50 -139 248 219 232 12 chr11 143988355 143988437 -6795116 - MER53 DNA DNA -7 182 83 * 1358 229 149 5 chr11 143988438 143988866 -6794687 - MLT1E2 LTR MaLR 0 626 137 191 357 18 0 chr11 143989170 143989226 -6794327 - L2 LINE L2 -94 3178 3122 1688 166 24 0 chr11 143989248 143989543 -6794010 + AluJb SINE Alu 1 302 -10 291 289 234 5 chr11 143990103 143990300 -6793253 - L2 LINE L2 -391 2923 2682 335 304 78 60 chr11 143991509 143991593 -6791960 + L2 LINE L2 2977 3058 -214 1137 238 104 25 chr11 143991593 143992072 -6791481 - LTR33 LTR ERVL -4 517 1 335 304 78 60 chr11 143992072 143992204 -6791349 + L2 LINE L2 3058 3197 -75 252 347 0 0 chr11 143992799 143992874 -6790679 + L2 LINE L2 2713 2787 -527 220 315 0 0 chr11 143992964 143993018 -6790535 + L2 LINE L2 3010 3063 -250 254 300 150 0 chr11 143993125 143993225 -6790328 + L2 LINE L2 3197 3311 -2 551 242 31 0 chr11 143993535 143993663 -6789890 - MIR SINE MIR -122 140 9 227 340 39 10 chr11 143994967 143995070 -6788483 - MIR SINE MIR -50 212 107 246 277 90 69 chr11 143995623 143995811 -6787742 - MLT1K LTR MaLR -243 345 154 368 319 36 6 chr11 143995928 143996094 -6787459 + L1MC4a LINE L1 5696 5866 -1942 2061 127 3 3 chr11 143996126 143996434 -6787119 + AluSg SINE Alu 3 310 0 243 102 0 20 chr11 143997741 143997790 -6785763 - L1MA7 LINE L1 -1 6290 6243 950 104 7 0 chr11 143998355 143998490 -6785063 + AluSq/x SINE Alu 1 136 -177 2444 69 0 0 chr11 143998490 143998795 -6784758 + AluY SINE Alu 1 305 -6 1857 155 7 0 chr11 143999010 143999320 -6784233 - AluJb SINE Alu 0 312 1 245 235 37 81 chr11 143999963 144000099 -6783454 + MIR3 SINE MIR 15 144 -64 826 129 7 34 chr11 144001063 144001210 -6782343 - AluJb SINE Alu -2 310 168 700 273 38 91 chr11 144001695 144002036 -6781517 + L2 LINE L2 2991 3313 0 1762 158 0 7 chr11 144002281 144002566 -6780987 + AluJo SINE Alu 10 292 -20 2031 130 0 0 chr11 144002942 144003234 -6780319 + AluSx SINE Alu 1 292 -20 1635 151 0 0 chr11 144004446 144004705 -6778848 + AluJb SINE Alu 35 293 -19 1535 258 85 45 chr11 144006265 144006960 -6776593 - L1MC4a LINE L1 -1831 5977 5255 1973 282 121 38 chr11 144006989 144008435 -6775118 + L1ME LINE L1 2754 4330 -1816 1868 125 3 26 chr11 144008435 144008738 -6774815 + AluSx SINE Alu 1 296 -16 1973 282 121 38 chr11 144008738 144008791 -6774762 + L1ME LINE L1 4330 4377 -1769 720 292 109 23 chr11 144008902 144009754 -6773799 + L1ME LINE L1 4574 5499 -667 494 284 66 51 chr11 144011497 144011694 -6771859 + MER115 DNA AcHobo 1 200 -493 857 256 23 6 chr11 144011978 144012213 -6771340 + MIR SINE MIR 20 258 -4 194 250 14 69 chr11 144012550 144012622 -6770931 - MIR3 SINE MIR -43 165 98 193 229 62 0 chr11 144013229 144013277 -6770276 + MIR SINE MIR 156 206 -56 499 268 70 0 chr11 144014175 144014317 -6769236 + MIR SINE MIR 100 251 -11 1892 109 0 4 chr11 144014491 144014758 -6768795 - AluJb SINE Alu -46 266 1 1847 153 3 7 chr11 144015803 144016098 -6767455 - AluSx SINE Alu -18 294 1 21 82 0 0 chr11 144016587 144016636 -6766917 + AT_rich Low_complexity Low_complexity 1 49 0 272 279 71 36 chr11 144016692 144016832 -6766721 - MIR SINE MIR -62 200 56 2138 102 0 0 chr11 144017285 144017578 -6765975 - AluY SINE Alu -18 293 1 966 276 112 26 chr11 144017853 144018377 -6765176 - L2 LINE L2 -4 3309 2732 1476 165 19 15 chr11 144019656 144019923 -6763630 + AluSx SINE Alu 34 301 -11 1759 156 0 0 chr11 144020616 144020892 -6762661 + AluJo SINE Alu 7 282 -30 188 232 146 12 chr11 144021483 144021565 -6761988 - L2 LINE L2 -898 2416 2324 327 297 60 49 chr11 144021588 144021773 -6761780 - MIR SINE MIR -69 193 7 2432 158 55 0 chr11 144022480 144022884 -6760669 - MSTB LTR MaLR 0 426 1 1420 139 151 16 chr11 144023969 144024220 -6759333 - AluJo SINE Alu -16 286 2 2402 71 0 3 chr11 144024391 144024685 -6758868 - AluSx SINE Alu -11 301 9 275 313 34 6 chr11 144024727 144024903 -6758650 - L1ME LINE L1 -249 5872 5692 405 0 0 0 chr11 144024903 144024948 -6758605 + (TG)n Simple_repeat Simple_repeat 2 46 0 250 371 23 0 chr11 144025782 144025914 -6757639 - MER117 DNA MER1_type -57 140 6 215 156 22 0 chr11 144026003 144026048 -6757505 + T-rich Low_complexity Low_complexity 3 48 0 228 368 177 32 chr11 144026987 144027297 -6756256 + L3 LINE CR1 814 1168 -409 256 294 147 43 chr11 144027312 144027496 -6756057 + L2 LINE L2 2761 2963 -351 276 185 0 0 chr11 144027684 144027738 -6755815 + (TG)n Simple_repeat Simple_repeat 1 54 0 214 179 141 26 chr11 144027783 144027861 -6755692 + L2 LINE L2 3180 3266 -47 673 306 219 3 chr11 144027920 144028231 -6755322 + L3 LINE CR1 1197 1574 -3 318 157 0 0 chr11 144028450 144028501 -6755052 + L2 LINE L2 3263 3313 0 552 248 64 50 chr11 144028533 144028751 -6754802 + L1ME3A LINE L1 5943 6163 -7 587 46 0 81 chr11 144028783 144028870 -6754683 + MADE1 DNA Mariner 1 80 0 2125 134 0 0 chr11 144031555 144031854 -6751699 - AluSx SINE Alu -11 301 3 340 161 0 0 chr11 144032057 144032119 -6751434 - FLAM_A SINE Alu 0 133 72 876 122 0 0 chr11 144032607 144032730 -6750823 + AluJb SINE Alu 174 296 -16 199 318 27 81 chr11 144033283 144033431 -6750122 - L2 LINE L2 -1 3312 3173 270 333 43 0 chr11 144034098 144034191 -6749362 - L3 LINE CR1 -17 1560 1464 2320 88 0 3 chr11 144034329 144034625 -6748928 - AluY SINE Alu -16 295 1 5447 57 47 1 chr11 144034667 144035411 -6748142 - L1PA6 LINE L1 -3 6151 5374 399 251 105 49 chr11 144035489 144035629 -6747924 - MIR SINE MIR 0 262 101 2041 132 3 19 chr11 144035629 144035939 -6747614 + AluSx SINE Alu 1 305 -7 399 251 105 49 chr11 144035939 144036045 -6747508 - MIR SINE MIR -161 101 2 2113 127 0 0 chr11 144036394 144036694 -6746859 - AluSx SINE Alu -12 300 1 471 363 28 33 chr11 144038446 144038661 -6744892 - L2 LINE L2 -2 3270 3057 2206 96 36 3 chr11 144038835 144039138 -6744415 + AluSq SINE Alu 1 313 0 2539 39 7 3 chr11 144040383 144040693 -6742860 - AluY SINE Alu 0 311 1 995 212 93 18 chr11 144042399 144042625 -6740928 - MIR SINE MIR -5 257 15 1954 113 46 7 chr11 144042736 144043018 -6740535 - AluSx SINE Alu -19 293 1 553 282 127 37 chr11 144043362 144043905 -6739648 - L1MC4a LINE L1 -1934 5874 5283 331 270 162 29 chr11 144043975 144044179 -6739374 - L1MC4a LINE L1 -922 5224 4994 962 137 13 7 chr11 144046221 144046374 -6737179 + AluSg/x SINE Alu 148 301 -11 297 305 0 0 chr11 144048159 144048241 -6735312 - MER58 DNA MER1_type 0 2420 134 191 403 19 52 chr11 144048310 144048464 -6735089 - L2 LINE L2 -205 3067 2919 481 349 60 16 chr11 144048618 144048936 -6734617 - L2 LINE L2 -601 2713 2382 182 339 32 0 chr11 144049666 144049728 -6733825 - MIR SINE MIR -117 145 82 200 189 0 0 chr11 144050323 144050360 -6733193 + MIR SINE MIR 218 254 -8 1601 158 10 26 chr11 144051177 144051480 -6732073 + AluJo SINE Alu 1 298 -14 2103 79 3 17 chr11 144051679 144051971 -6731582 - AluSx SINE Alu -24 288 1 371 279 45 40 chr11 144051971 144052218 -6731335 + L1ME LINE L1 5573 5820 -301 328 252 59 126 chr11 144052515 144052622 -6730931 - L1ME LINE L1 -430 5691 5605 2379 77 0 3 chr11 144052622 144052935 -6730618 - AluSx SINE Alu 0 312 1 328 252 59 126 chr11 144052935 144053049 -6730504 - L1ME LINE L1 -516 5605 5485 267 31 0 0 chr11 144053266 144053298 -6730255 + (A)n Simple_repeat Simple_repeat 1 32 0 522 161 0 0 chr11 144053819 144053912 -6729641 + (TG)n Simple_repeat Simple_repeat 2 94 0 676 228 114 49 chr11 144054540 144054847 -6728706 - MER102a DNA MER1_type -3 327 1 180 316 0 51 chr11 144057653 144057732 -6725821 + MIR3 SINE MIR 120 194 -14 262 315 116 27 chr11 144058336 144058482 -6725071 + MIR3 SINE MIR 30 188 -20 320 93 0 19 chr11 144058616 144058670 -6724883 + (TG)n Simple_repeat Simple_repeat 2 54 0 227 167 146 0 chr11 144059355 144059403 -6724150 - L2 LINE L2 -12 3260 3206 902 159 30 90 chr11 144059482 144059683 -6723870 - MER5A DNA MER1_type 0 189 1 24 0 0 0 chr11 144059828 144059852 -6723701 + AT_rich Low_complexity Low_complexity 1 24 0 264 215 0 92 chr11 144059857 144059922 -6723631 - L2 LINE L2 -5 3267 3209 21 0 0 0 chr11 144060007 144060028 -6723525 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr11 144060631 144060656 -6722897 + AT_rich Low_complexity Low_complexity 1 25 0 1208 128 28 0 chr11 144062139 144062318 -6721235 - AluSg/x SINE Alu -12 300 117 2005 108 20 7 chr11 144062364 144062661 -6720892 + AluSx SINE Alu 1 301 -11 2221 98 7 0 chr11 144063147 144063443 -6720110 + AluSq SINE Alu 1 298 -15 501 324 200 13 chr11 144063516 144063786 -6719767 - L2 LINE L2 -261 3052 2834 2332 95 3 3 chr11 144063786 144064090 -6719463 - AluSg SINE Alu -6 304 1 501 324 200 13 chr11 144064090 144064241 -6719312 - L2 LINE L2 -479 2834 2553 216 0 0 0 chr11 144064299 144064323 -6719230 + (A)n Simple_repeat Simple_repeat 1 24 0 1989 145 3 6 chr11 144064887 144065198 -6718355 - AluSx SINE Alu -2 310 1 2239 73 0 0 chr11 144065928 144066231 -6717322 - AluY SINE Alu 0 312 10 2395 77 3 3 chr11 144066869 144067169 -6716384 + AluSg SINE Alu 1 300 -10 2309 82 3 0 chr11 144068046 144068328 -6715225 + AluSp SINE Alu 3 285 -28 984 184 0 18 chr11 144069320 144069488 -6714065 + AluJ SINE Alu 1 165 -147 578 168 84 0 chr11 144069565 144069672 -6713881 + AluJ SINE Alu 161 276 -36 751 279 55 31 chr11 144070283 144070814 -6712739 - L1MEc LINE L1 -4514 1776 1264 2202 83 0 7 chr11 144071188 144071477 -6712076 - AluSp SINE Alu -15 298 12 2092 131 0 13 chr11 144072110 144072416 -6711137 + AluSx SINE Alu 1 302 -10 203 388 38 0 chr11 144072969 144073049 -6710504 + L2 LINE L2 3185 3267 -5 418 249 220 11 chr11 144074048 144074225 -6709328 + L1ME LINE L1 2 215 -5855 22 0 0 0 chr11 144074319 144074341 -6709212 + AT_rich Low_complexity Low_complexity 1 22 0 * 1180 247 35 11 chr11 144074326 144074702 -6708851 + L1ME LINE L1 631 1015 -5055 1888 114 48 7 chr11 144076832 144077121 -6706432 - AluSx SINE Alu -11 301 1 243 23 68 0 chr11 144077702 144077746 -6705807 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr11 144078682 144078710 -6704843 + AT_rich Low_complexity Low_complexity 1 28 0 331 314 0 0 chr11 144078723 144078809 -6704744 - L1MC4 LINE L1 -1336 6706 6621 365 290 55 13 chr11 144078927 144079122 -6704431 - MIR SINE MIR -7 255 2 185 254 73 0 chr11 144084294 144084349 -6699204 + L2 LINE L2 3208 3266 -6 1280 159 114 3 chr11 144084774 144085064 -6698489 + MER33 DNA MER1_type 3 324 0 256 164 0 82 chr11 144085064 144085118 -6698435 - MIR3 SINE MIR -48 160 110 228 241 0 0 chr11 144085582 144085640 -6697913 + CT-rich Low_complexity Low_complexity 3 60 0 * 235 253 25 0 chr11 144085598 144085677 -6697876 + (TTCA)n Simple_repeat Simple_repeat 4 84 0 222 261 0 62 chr11 144086831 144086896 -6696657 + C-rich Low_complexity Low_complexity 2 62 0 906 219 66 16 chr11 144088081 144088323 -6695230 - MER33 DNA MER1_type -67 257 4 363 179 8 128 chr11 144089935 144090052 -6693501 + MER5A DNA MER1_type 63 165 -24 201 271 29 43 chr11 144089996 144090066 -6693487 - MER5A DNA MER1_type -101 88 20 * 2218 96 7 0 chr11 144090503 144090805 -6692748 + AluSx SINE Alu 1 304 -8 363 304 216 6 chr11 144090811 144090992 -6692561 + L2 LINE L2 2537 2755 -559 230 214 0 0 chr11 144091035 144091077 -6692476 + L2 LINE L2 3224 3265 -7 237 297 44 11 chr11 144091589 144091680 -6691873 - L3 LINE CR1 -2 1575 1482 250 266 53 64 chr11 144091764 144091858 -6691695 + MIR SINE MIR 99 191 -71 263 222 242 10 chr11 144091871 144091970 -6691583 + L1ME3A LINE L1 6012 6133 -37 180 0 0 0 chr11 144092012 144092032 -6691521 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 1563 174 49 88 chr11 144092998 144093429 -6690124 - MLT2D LTR ERVL 0 414 1 211 234 94 0 chr11 144093658 144093722 -6689831 + MIR SINE MIR 74 143 -119 268 313 57 51 chr11 144094406 144094582 -6688971 + MIR SINE MIR 80 256 -6 265 278 105 31 chr11 144094592 144094754 -6688799 - L3 LINE CR1 -200 1377 1204 228 226 48 16 chr11 144095391 144095453 -6688100 - L3 LINE CR1 -774 803 740 394 294 78 33 chr11 144096118 144096271 -6687282 + MIR SINE MIR 4 163 -45 2051 122 0 0 chr11 144096277 144096572 -6686981 + AluSx SINE Alu 1 295 -17 1304 169 60 115 chr11 144097109 144097493 -6686060 - MLT1A1 LTR MaLR -2 363 1 1323 248 166 9 chr11 144098304 144098955 -6684598 - LTR50 LTR ERVL 0 795 14 381 341 77 60 chr11 144099247 144099661 -6683892 + L1 LINE L1 4742 5162 -984 1873 95 0 0 chr11 144099677 144099930 -6683623 + AluSg SINE Alu 58 310 0 21 36 0 0 chr11 144099934 144099962 -6683591 + GC_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr11 144100079 144100101 -6683452 + (A)n Simple_repeat Simple_repeat 1 22 0 2245 78 3 0 chr11 144100978 144101260 -6682293 + AluSp SINE Alu 3 285 -28 900 184 0 18 chr11 144102252 144102420 -6681133 + AluJ SINE Alu 1 165 -147 583 168 84 0 chr11 144102497 144102604 -6680949 + AluJ SINE Alu 161 276 -36 679 299 77 49 chr11 144103028 144104020 -6679533 - L1MDa LINE L1 -4387 2334 1253 2147 79 0 7 chr11 144104121 144104411 -6679142 - AluSp SINE Alu -14 299 12 205 388 38 0 chr11 144104614 144104694 -6678859 + L2 LINE L2 3185 3267 -5 418 249 220 11 chr11 144105693 144105870 -6677683 + L1ME LINE L1 2 215 -5855 1191 245 35 11 chr11 144105971 144106347 -6677206 + L1ME LINE L1 631 1015 -5055 1888 114 48 7 chr11 144108477 144108766 -6674787 - AluSx SINE Alu -11 301 1 243 23 68 0 chr11 144109348 144109392 -6674161 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 26 64 0 0 chr11 144110244 144110291 -6673262 + AT_rich Low_complexity Low_complexity 1 47 0 1613 117 45 20 chr11 144110859 144111106 -6672447 - THE1B LTR MaLR -1 363 111 28 0 0 0 chr11 144111230 144111258 -6672295 + AT_rich Low_complexity Low_complexity 1 28 0 2181 108 3 0 chr11 144111263 144111559 -6671994 - AluSx SINE Alu -10 302 6 624 194 89 0 chr11 144111631 144111755 -6671798 + MER3 DNA MER1_type 1 135 -74 987 156 0 0 chr11 144111849 144112003 -6671550 - FRAM SINE Alu -16 160 7 2168 84 0 3 chr11 144112168 144112454 -6671099 - AluY SINE Alu -26 285 1 2185 72 10 3 chr11 144112690 144112982 -6670571 - AluSc SINE Alu -15 294 1 201 74 0 0 chr11 144113109 144113136 -6670417 + (A)n Simple_repeat Simple_repeat 1 27 0 214 303 101 20 chr11 144114544 144114643 -6668910 - L2 LINE L2 -40 3232 3126 2036 76 3 21 chr11 144114888 144115200 -6668353 - AluSx SINE Alu 0 307 1 206 158 193 18 chr11 144115311 144115368 -6668185 - MIR SINE MIR -113 149 83 288 0 0 0 chr11 144115748 144115780 -6667773 + (A)n Simple_repeat Simple_repeat 1 32 0 2264 67 7 10 chr11 144115842 144116140 -6667413 + AluSg SINE Alu 1 297 -13 2319 71 3 0 chr11 144116823 144117117 -6666436 - AluSp SINE Alu -18 295 1 1834 153 0 6 chr11 144117543 144117856 -6665697 - AluSx SINE Alu -1 311 1 3333 141 103 16 chr11 144117873 144118448 -6665105 + MER51A LTR ERV1 1 625 -9 357 260 130 0 chr11 144118479 144118602 -6664951 - MIR SINE MIR -77 185 47 3656 145 47 19 chr11 144119278 144119961 -6663592 + L1MA3 LINE L1 5604 6305 0 2162 67 0 11 chr11 144119977 144120259 -6663294 - AluSc SINE Alu -30 279 1 26 0 0 0 chr11 144120425 144120451 -6663102 + AT_rich Low_complexity Low_complexity 1 26 0 27 62 0 0 chr11 144120523 144120571 -6662982 + AT_rich Low_complexity Low_complexity 1 48 0 2137 114 3 0 chr11 144120622 144120929 -6662624 + AluSp SINE Alu 1 308 -5 26 0 0 0 chr11 144121434 144121460 -6662093 + AT_rich Low_complexity Low_complexity 1 26 0 339 311 145 53 chr11 144122508 144122736 -6660817 - MIR SINE MIR -12 250 2 2084 105 0 20 chr11 144122935 144123239 -6660314 + AluSx SINE Alu 8 305 -7 2132 101 3 0 chr11 144123637 144123924 -6659629 - AluSp SINE Alu -13 300 13 336 24 0 0 chr11 144125429 144125470 -6658083 + (CA)n Simple_repeat Simple_repeat 2 42 0 2416 82 13 3 chr11 144126577 144126882 -6656671 - AluSq SINE Alu -5 308 1 311 0 26 0 chr11 144127024 144127063 -6656490 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr11 144127156 144127177 -6656376 + AT_rich Low_complexity Low_complexity 1 21 0 287 281 12 12 chr11 144127382 144127464 -6656089 - MER2 DNA MER2_type 0 345 264 2405 90 0 13 chr11 144127474 144127786 -6655767 + AluSx SINE Alu 1 308 -4 961 136 101 70 chr11 144127787 144127986 -6655567 - MER2 DNA MER2_type -140 205 1 26 50 0 0 chr11 144129283 144129323 -6654230 + AT_rich Low_complexity Low_complexity 1 40 0 480 135 45 0 chr11 144129543 144129632 -6653921 + MER5A DNA MER1_type 14 106 -83 181 271 50 111 chr11 144129916 144130115 -6653438 - L2 LINE L2 -503 2811 2625 397 346 70 9 chr11 144130988 144131202 -6652351 - L3 LINE CR1 -7 1570 1344 839 204 52 90 chr11 144132302 144132660 -6650893 + L1ME3 LINE L1 5840 6162 0 428 276 103 11 chr11 144132793 144132978 -6650575 - MIR SINE MIR 0 262 61 25 0 0 0 chr11 144137584 144137609 -6645944 + GC_rich Low_complexity Low_complexity 1 25 0 21 82 0 0 chr11 144137801 144137850 -6645703 + GC_rich Low_complexity Low_complexity 1 49 0 267 161 0 86 chr11 144138270 144138363 -6645190 + (CCCCG)n Simple_repeat Simple_repeat 5 89 0 2216 79 3 73 chr11 144139083 144139398 -6644155 - AluSx SINE Alu -19 293 1 1526 188 33 30 chr11 144140380 144140684 -6642869 + MLT1A1 LTR MaLR 61 365 0 214 324 73 7 chr11 144140719 144140855 -6642698 - L2 LINE L2 -1051 2263 2119 238 326 51 55 chr11 144140868 144141104 -6642449 - L2 LINE L2 -1901 1413 1179 2366 87 0 0 chr11 144141655 144141953 -6641600 + AluY SINE Alu 1 298 -13 216 290 0 0 chr11 144142022 144142084 -6641469 + MIR SINE MIR 82 143 -119 381 277 17 0 chr11 144142124 144142243 -6641310 + MIR SINE MIR 140 260 -2 483 260 53 40 chr11 144142305 144142455 -6641098 - MIR SINE MIR -102 160 9 2838 13 0 0 chr11 144143861 144144166 -6639387 + AluYb8 SINE Alu 1 305 -13 1844 181 0 3 chr11 144144326 144144625 -6638928 + AluJb SINE Alu 1 298 -14 821 154 0 22 chr11 144144795 144144931 -6638622 + FLAM_C SINE Alu 1 133 0 199 244 0 0 chr11 144145412 144145457 -6638096 + MIR SINE MIR 110 154 -108 1153 227 110 64 chr11 144145465 144145919 -6637634 + L1MC4a LINE L1 5519 5993 -1815 1203 146 0 6 chr11 144145934 144146112 -6637441 - AluJb SINE Alu -1 311 135 1458 182 89 0 chr11 144146184 144146453 -6637100 + AluJb SINE Alu 1 293 -19 229 262 0 16 chr11 144146571 144146632 -6636921 + L2 LINE L2 3195 3254 -18 234 284 83 9 chr11 144148405 144148514 -6635039 + MIR SINE MIR 122 238 -24 412 248 13 81 chr11 144148605 144148683 -6634870 + MIR SINE MIR 76 141 -121 1983 164 0 3 chr11 144148683 144148981 -6634572 + AluJo SINE Alu 9 305 -7 412 248 13 81 chr11 144148981 144149051 -6634502 + MIR SINE MIR 141 214 -48 21 0 0 0 chr11 144149073 144149094 -6634459 + AT_rich Low_complexity Low_complexity 1 21 0 745 142 0 85 chr11 144149562 144149703 -6633850 + FLAM_C SINE Alu 13 141 -2 2301 114 3 0 chr11 144149758 144150064 -6633489 + AluSx SINE Alu 1 307 -5 1673 222 43 3 chr11 144150469 144150820 -6632733 + MLT1A1 LTR MaLR 1 365 0 2143 88 0 70 chr11 144151038 144151366 -6632187 + AluSq SINE Alu 2 306 -7 2284 110 3 3 chr11 144152196 144152506 -6631047 - AluSx SINE Alu -2 310 1 2338 81 0 10 chr11 144153327 144153624 -6629929 - AluY SINE Alu -17 294 1 989 116 0 0 chr11 144153798 144153936 -6629617 - AluSg/x SINE Alu -14 298 161 983 106 15 0 chr11 144153936 144154068 -6629485 + AluSq/x SINE Alu 17 150 -162 2476 74 0 6 chr11 144154135 144154446 -6629107 + AluSx SINE Alu 1 309 -3 214 207 103 0 chr11 144154584 144154642 -6628911 + MIR SINE MIR 125 188 -74 611 215 49 14 chr11 144155918 144156062 -6627491 + MIR SINE MIR 40 188 -74 182 0 0 97 chr11 144156388 144156419 -6627134 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1562 152 17 45 chr11 144156421 144156711 -6626842 - AluJo SINE Alu -30 282 1 918 170 50 11 chr11 144156851 144157033 -6626520 - MER20 DNA MER1_type 0 219 31 367 256 50 11 chr11 144157152 144157297 -6626256 - MIR SINE MIR -41 221 70 225 119 0 0 chr11 144158748 144158790 -6624763 + (TC)n Simple_repeat Simple_repeat 2 43 0 249 33 0 0 chr11 144158791 144158821 -6624732 + (CA)n Simple_repeat Simple_repeat 2 31 0 2162 102 3 10 chr11 144159936 144160230 -6623323 - AluSc SINE Alu -17 292 1 2080 227 50 7 chr11 144161313 144161775 -6621778 - LTR16C LTR ERVL -2 489 8 602 141 0 0 chr11 144161818 144161917 -6621636 + AluSg/x SINE Alu 202 300 -9 24 32 0 0 chr11 144161935 144161966 -6621587 + AT_rich Low_complexity Low_complexity 1 31 0 2515 89 0 0 chr11 144162149 144162462 -6621091 + AluSp SINE Alu 1 313 0 427 282 98 0 chr11 144162963 144163126 -6620427 + MIR SINE MIR 70 248 -14 1179 126 15 45 chr11 144163142 144163341 -6620212 + AluJo SINE Alu 100 292 -20 21 36 0 0 chr11 144163837 144163865 -6619688 + AT_rich Low_complexity Low_complexity 1 28 0 2171 169 88 38 chr11 144164105 144164631 -6618922 + MER92B LTR ERV1 85 636 0 1839 163 7 3 chr11 144164792 144165081 -6618472 - AluJo SINE Alu -22 290 1 2190 103 3 17 chr11 144165295 144165596 -6617957 - AluSx SINE Alu -15 297 1 217 211 0 0 chr11 144166196 144166234 -6617319 + polypyrimidine Low_complexity Low_complexity 3 40 0 3596 224 121 131 chr11 144166270 144166391 -6617162 - HAL1 LINE L1 -22 2485 2364 1909 103 55 11 chr11 144166391 144166716 -6616837 - AluSx SINE Alu 0 337 1 3596 224 121 131 chr11 144166716 144166867 -6616686 - HAL1 LINE L1 -143 2364 2213 2484 50 7 0 chr11 144166867 144167164 -6616389 + AluY SINE Alu 1 299 -12 3596 224 121 131 chr11 144167164 144168098 -6615455 - HAL1 LINE L1 -294 2213 1271 897 135 0 30 chr11 144168098 144168231 -6615322 - FLAM_C SINE Alu -14 129 1 3596 224 121 131 chr11 144168231 144168247 -6615306 - HAL1 LINE L1 -1236 1271 1256 1761 182 3 10 chr11 144168247 144168549 -6615004 - AluJo SINE Alu -12 300 1 3596 224 121 131 chr11 144168549 144168779 -6614774 - HAL1 LINE L1 -1251 1256 1025 1939 151 14 3 chr11 144168779 144169070 -6614483 - AluJb SINE Alu -18 294 1 3596 224 121 131 chr11 144169070 144169889 -6613664 - HAL1 LINE L1 -1482 1025 100 1139 156 32 17 chr11 144169934 144170263 -6613290 + MLT2A2 LTR ERVL 219 453 0 394 261 174 29 chr11 144170591 144170798 -6612755 + MIR SINE MIR 12 248 -14 199 339 93 0 chr11 144171078 144171196 -6612357 - MIR SINE MIR -55 207 79 2207 114 0 0 chr11 144171223 144171513 -6612040 + AluSx SINE Alu 2 291 -21 207 69 0 0 chr11 144171519 144171548 -6612005 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2160 122 7 0 chr11 144171887 144172182 -6611371 - AluSx SINE Alu -15 297 1 257 174 0 0 chr11 144172393 144172439 -6611114 - HAL1 LINE L1 0 2507 2462 180 320 40 10 chr11 144172939 144173039 -6610514 + L2 LINE L2 2213 2315 -999 1282 254 81 87 chr11 144173619 144174309 -6609244 - MER21B LTR ERV1 -149 714 29 2416 93 3 3 chr11 144174628 144174941 -6608612 - AluSq SINE Alu 0 313 1 3569 168 77 37 chr11 144175290 144175502 -6608051 - L1MB8 LINE L1 -161 6017 5815 2203 134 0 0 chr11 144175502 144175808 -6607745 - AluSx SINE Alu -6 306 1 3569 168 77 37 chr11 144175808 144176346 -6607207 - L1MB8 LINE L1 -363 5815 5206 2225 110 17 0 chr11 144176346 144176638 -6606915 - AluSq SINE Alu -16 297 1 3569 168 77 37 chr11 144176638 144176987 -6606566 - L1MB8 LINE L1 -972 5206 4872 420 275 41 58 chr11 144179160 144179331 -6604222 - MIR SINE MIR -79 183 16 376 229 167 35 chr11 144179462 144179606 -6603947 + MIR3 SINE MIR 35 197 -11 183 326 0 0 chr11 144179587 144179630 -6603923 + L3b LINE CR1 1530 1572 -11 * 1709 228 30 0 chr11 144179947 144180320 -6603233 - MLT1B LTR MaLR -6 384 1 200 354 197 0 chr11 144180368 144180515 -6603038 - MIR SINE MIR -14 248 73 2370 99 0 0 chr11 144183313 144183605 -6599948 - AluSc SINE Alu -12 297 6 868 169 7 7 chr11 144185221 144185375 -6598178 - FRAM SINE Alu -11 155 2 189 260 104 0 chr11 144185496 144185573 -6597980 - MIR3 SINE MIR -45 163 79 360 316 17 8 chr11 144186156 144186298 -6597255 - MER5A DNA MER1_type -33 156 3 272 57 0 0 chr11 144186521 144186556 -6596997 + U2 snRNA snRNA 1 35 -153 347 286 19 9 chr11 144186773 144186878 -6596675 + L2 LINE L2 3160 3265 -7 385 84 56 14 chr11 144187319 144187390 -6596163 + L1MB8 LINE L1 6104 6177 -1 1661 186 31 10 chr11 144187464 144187755 -6595798 + AluJo SINE Alu 14 310 -2 326 205 24 110 chr11 144188528 144188595 -6594958 - MER94 DNA DNA 0 134 80 1731 164 21 14 chr11 144188595 144188900 -6594653 - AluJb SINE Alu 0 307 1 326 205 24 110 chr11 144188900 144188958 -6594595 - MER94 DNA DNA -54 80 19 201 180 40 0 chr11 144189282 144189332 -6594221 - L3b LINE CR1 -350 1233 1182 1941 126 86 0 chr11 144189454 144189732 -6593821 - AluSx SINE Alu -10 302 1 1697 181 31 10 chr11 144189753 144190046 -6593507 - AluJo SINE Alu 0 312 14 385 84 56 14 chr11 144190120 144190191 -6593362 - L1MB8 LINE L1 -1 6177 6104 347 286 19 9 chr11 144190632 144190737 -6592816 - L2 LINE L2 -7 3265 3160 272 57 0 0 chr11 144190954 144190989 -6592564 - U2 snRNA snRNA -153 35 1 360 316 17 8 chr11 144191212 144191354 -6592199 + MER5A DNA MER1_type 3 156 -33 228 194 15 30 chr11 144191671 144191738 -6591815 + C-rich Low_complexity Low_complexity 4 69 0 189 260 104 0 chr11 144191996 144192073 -6591480 + MIR3 SINE MIR 79 163 -45 868 169 7 7 chr11 144192194 144192348 -6591205 + FRAM SINE Alu 2 155 -11 2370 99 0 0 chr11 144193964 144194256 -6589297 + AluSc SINE Alu 6 297 -12 206 327 168 0 chr11 144197094 144197201 -6586352 + MIR SINE MIR 124 248 -14 1728 225 30 0 chr11 144197249 144197622 -6585931 + MLT1B LTR MaLR 1 384 -6 183 326 0 0 chr11 144197939 144197982 -6585571 - L3b LINE CR1 -11 1572 1530 * 376 229 167 35 chr11 144197963 144198107 -6585446 - MIR3 SINE MIR -11 197 35 420 275 41 58 chr11 144198238 144198409 -6585144 + MIR SINE MIR 16 183 -79 3562 169 75 37 chr11 144200583 144200935 -6582618 + L1MB8 LINE L1 4872 5209 -969 2225 110 17 0 chr11 144200935 144201227 -6582326 + AluSq SINE Alu 1 297 -16 3562 169 75 37 chr11 144201227 144201765 -6581788 + L1MB8 LINE L1 5209 5814 -364 2203 134 0 0 chr11 144201765 144202071 -6581482 + AluSx SINE Alu 1 306 -6 3562 169 75 37 chr11 144202071 144202283 -6581270 + L1MB8 LINE L1 5814 6017 -161 2444 93 3 3 chr11 144202632 144202945 -6580608 + AluSq SINE Alu 1 313 0 1253 268 77 83 chr11 144203264 144203954 -6579599 + MER21B LTR ERV1 29 714 -149 212 316 300 16 chr11 144204384 144204634 -6578919 - L2 LINE L2 -781 2533 2213 239 174 0 0 chr11 144205134 144205180 -6578373 + HAL1 LINE L1 2462 2507 0 2491 88 3 0 chr11 144205391 144205696 -6577857 + AluSp SINE Alu 1 306 -7 485 257 0 9 chr11 144206095 144206208 -6577345 + MER58 DNA MER1_type 11 122 -219 293 194 0 133 chr11 144206211 144206309 -6577244 + MLT1B LTR MaLR 1 85 -305 2119 127 7 7 chr11 144206526 144206834 -6576719 - AluJb SINE Alu -4 308 1 1981 129 3 42 chr11 144207766 144208076 -6575477 - AluJb SINE Alu -14 298 1 756 264 160 11 chr11 144208737 144209006 -6574547 + MER102b DNA MER1_type 1 309 -32 186 43 0 0 chr11 144210491 144210514 -6573039 + (GA)n Simple_repeat Simple_repeat 2 24 0 2733 144 50 56 chr11 144210813 144211439 -6572114 - L1MB3 LINE L1 0 6183 5562 2240 112 0 16 chr11 144212427 144212731 -6570822 + AluSx SINE Alu 1 299 -13 461 304 98 5 chr11 144213251 144213435 -6570118 - MIR SINE MIR -13 249 49 216 287 124 31 chr11 144213493 144213622 -6569931 + MER5B DNA MER1_type 4 144 -34 471 272 195 63 chr11 144213659 144213719 -6569834 + L1MC4a LINE L1 5254 5305 -2503 1666 118 65 99 chr11 144213719 144214041 -6569512 + AluSx SINE Alu 1 311 -1 471 272 195 63 chr11 144214041 144214564 -6568989 + L1MC4a LINE L1 5305 5914 -1894 239 278 0 83 chr11 144214701 144214809 -6568744 + L1MC/D LINE L1 5808 5906 -1902 244 261 14 14 chr11 144214809 144214878 -6568675 + (CATATA)n Simple_repeat Simple_repeat 5 73 0 1912 168 3 0 chr11 144215153 144215444 -6568109 - AluJo SINE Alu -16 296 5 456 236 189 7 chr11 144215998 144216146 -6567407 + MER5A DNA MER1_type 13 187 -2 298 263 68 45 chr11 144216219 144216352 -6567201 + MIR SINE MIR 13 148 -114 438 69 0 0 chr11 144216670 144216728 -6566825 + (CA)n Simple_repeat Simple_repeat 2 59 0 2517 53 0 17 chr11 144220238 144220540 -6563013 + AluY SINE Alu 1 297 -14 180 0 0 0 chr11 144220558 144220578 -6562975 + (T)n Simple_repeat Simple_repeat 1 20 0 408 157 0 0 chr11 144220579 144220649 -6562904 - U4 snRNA snRNA -75 70 1 378 0 0 0 chr11 144220664 144220706 -6562847 + (T)n Simple_repeat Simple_repeat 1 42 0 498 311 7 23 chr11 144220958 144221260 -6562293 + AluYa5 SINE Alu 2 298 -13 189 0 0 0 chr11 144221278 144221299 -6562254 + (T)n Simple_repeat Simple_repeat 1 21 0 423 0 0 0 chr11 144221383 144221430 -6562123 + (T)n Simple_repeat Simple_repeat 1 47 0 271 229 191 38 chr11 144221982 144222087 -6561466 + MIR SINE MIR 22 142 -66 2479 74 3 0 chr11 144222319 144222618 -6560935 + AluY SINE Alu 1 300 -11 1639 148 24 28 chr11 144222635 144222926 -6560627 + AluJo SINE Alu 5 294 -18 226 255 35 78 chr11 144222938 144222995 -6560558 - HAL1 LINE L1 -27 2480 2422 2195 133 0 10 chr11 144222995 144223303 -6560250 + AluSx SINE Alu 1 305 -7 226 255 35 78 chr11 144223303 144223386 -6560167 - HAL1 LINE L1 -85 2422 2346 521 154 203 0 chr11 144223415 144223538 -6560015 - MER6 DNA MER2_type -55 810 663 * 3138 188 54 7 chr11 144223530 144224157 -6559396 - MER6 DNA MER2_type -70 795 -27 269 288 96 30 chr11 144224158 144224356 -6559197 - HAL1 LINE L1 -190 2317 2107 745 237 156 50 chr11 144224605 144225086 -6558467 - HAL1 LINE L1 -755 1752 1221 943 238 126 53 chr11 144225163 144225520 -6558033 + L2 LINE L2 2931 3313 0 303 290 28 83 chr11 144225975 144226120 -6557433 - HAL1 LINE L1 -2339 168 32 1351 128 44 0 chr11 144226252 144226456 -6557097 - AluJo SINE Alu -1 311 99 23 33 0 0 chr11 144226732 144226762 -6556791 + AT_rich Low_complexity Low_complexity 1 30 0 1579 155 42 14 chr11 144227319 144227603 -6555950 + AluJo SINE Alu 1 292 -20 2074 122 0 0 chr11 144227795 144228089 -6555464 + AluSx SINE Alu 1 294 -18 227 338 188 0 chr11 144228495 144228735 -6554818 - L2 LINE L2 -1053 2261 1977 443 274 115 51 chr11 144229001 144229158 -6554395 + MIR SINE MIR 75 241 -21 350 325 117 30 chr11 144229700 144230208 -6553345 - L2 LINE L2 -35 3237 2683 2163 46 53 0 chr11 144230209 144230491 -6553062 + AluY SINE Alu 1 297 -14 1108 260 84 66 chr11 144230939 144231081 -6552472 - L2 LINE L2 -12 3301 3163 1669 172 7 16 chr11 144231081 144231389 -6552164 + AluJb SINE Alu 1 305 -7 1108 260 84 66 chr11 144231389 144231673 -6551880 - L2 LINE L2 -150 3163 2867 1986 116 0 4 chr11 144232603 144232879 -6550674 + AluSx SINE Alu 22 296 -16 1321 154 112 4 chr11 144234052 144234319 -6549234 + AluJb SINE Alu 1 296 -16 2153 108 3 0 chr11 144234409 144234714 -6548839 - AluSx SINE Alu -6 306 1 1725 171 10 0 chr11 144235151 144235450 -6548103 - AluJb SINE Alu -10 302 1 1990 124 10 13 chr11 144235545 144235852 -6547701 - AluSx SINE Alu -6 306 1 2106 110 0 7 chr11 144235902 144236212 -6547341 - AluSg1 SINE Alu -1 308 1 2143 109 0 0 chr11 144236790 144237093 -6546460 - AluSg SINE Alu -7 303 1 787 103 11 109 chr11 144239439 144239614 -6543939 - MER46A DNA MER2_type 0 236 79 521 219 235 20 chr11 144239615 144239811 -6543742 + MIR SINE MIR 11 248 -14 2164 92 3 32 chr11 144240454 144240768 -6542785 + AluSp SINE Alu 1 305 -8 1731 171 3 0 chr11 144241061 144241359 -6542194 + AluJb SINE Alu 1 299 -13 2279 255 115 62 chr11 144242559 144242787 -6540766 - HAL1 LINE L1 -107 2400 2185 2164 92 0 7 chr11 144242787 144243079 -6540474 - AluSg SINE Alu -20 290 1 2279 255 115 62 chr11 144243079 144244178 -6539375 - HAL1 LINE L1 -322 2185 1003 2286 81 7 0 chr11 144244178 144244475 -6539078 - AluY SINE Alu -12 299 1 189 0 0 0 chr11 144244475 144244496 -6539057 + (T)n Simple_repeat Simple_repeat 1 21 0 183 42 0 0 chr11 144244605 144244629 -6538924 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1383 83 0 0 chr11 144244629 144244810 -6538743 + AluSc SINE Alu 129 309 0 659 288 82 84 chr11 144244816 144245004 -6538549 - HAL1 LINE L1 -1525 982 795 1914 79 0 0 chr11 144245004 144245244 -6538309 + AluSx SINE Alu 1 240 -72 659 288 82 84 chr11 144245244 144245604 -6537949 - HAL1 LINE L1 -1712 795 435 1425 148 89 55 chr11 144245897 144246188 -6537365 - AluJo SINE Alu -11 301 1 192 312 161 0 chr11 144246451 144246544 -6537009 + L2 LINE L2 3139 3246 -26 1413 108 0 0 chr11 144246545 144246739 -6536814 - AluSx SINE Alu -118 194 1 183 42 0 0 chr11 144248466 144248490 -6535063 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1893 135 0 4 chr11 144248493 144248774 -6534779 - AluSx SINE Alu -32 280 1 1165 81 19 0 chr11 144248806 144248967 -6534586 + AluSg/x SINE Alu 135 298 -12 3577 173 61 17 chr11 144249012 144249232 -6534321 + L1MB7 LINE L1 4977 5186 -998 850 142 0 15 chr11 144249232 144249366 -6534187 + FLAM_C SINE Alu 2 133 0 3577 173 61 17 chr11 144249366 144250123 -6533430 + L1MB7 LINE L1 5186 5994 -190 559 182 8 8 chr11 144250122 144250243 -6533310 + L1M4 LINE L1 3579 3699 -2447 * 749 214 0 25 chr11 144250251 144250410 -6533143 + FRAM SINE Alu 11 165 -11 3077 214 63 57 chr11 144250410 144250545 -6533008 + L1M4 LINE L1 3696 3829 -2317 2167 112 0 0 chr11 144250545 144250841 -6532712 + AluSx SINE Alu 1 296 -16 3077 214 63 57 chr11 144250841 144251443 -6532110 + L1M4 LINE L1 3829 4443 -1703 2104 105 3 0 chr11 144251443 144251739 -6531814 + AluSq SINE Alu 1 297 -16 3077 214 63 57 chr11 144251739 144251955 -6531598 + L1M4 LINE L1 4443 4656 -1490 481 126 0 92 chr11 144251956 144252043 -6531510 + FLAM_A SINE Alu 1 79 -63 1180 113 12 0 chr11 144252047 144252215 -6531338 + 7SLRNA srpRNA srpRNA 141 310 -10 505 262 26 22 chr11 144252216 144252465 -6531088 + L1M4 LINE L1 4643 5200 -946 946 182 0 6 chr11 144252468 144252633 -6530920 + FRAM SINE Alu 1 163 -13 2183 96 3 3 chr11 144252636 144252948 -6530605 + AluSx SINE Alu 1 312 0 477 172 20 0 chr11 144252948 144253047 -6530506 + L1M4 LINE L1 5200 5300 -846 429 307 132 21 chr11 144253301 144253490 -6530063 + MIR SINE MIR 46 255 -7 779 163 7 22 chr11 144253522 144253657 -6529896 - FLAM_C SINE Alu -5 138 6 226 160 0 40 chr11 144253880 144253930 -6529623 + AluSg/x SINE Alu 85 132 -170 1529 183 17 10 chr11 144253932 144254227 -6529326 + AluJb SINE Alu 1 297 -15 2180 76 3 3 chr11 144254505 144254793 -6528760 + AluSg SINE Alu 7 294 -16 354 134 0 0 chr11 144254793 144254860 -6528693 + (TA)n Simple_repeat Simple_repeat 1 67 0 1078 139 0 0 chr11 144254925 144255097 -6528456 + AluSg/x SINE Alu 139 310 0 333 267 121 0 chr11 144255099 144255215 -6528338 - L1MC/D LINE L1 -2095 5713 5584 2282 90 3 0 chr11 144255280 144255579 -6527974 - AluSp SINE Alu -13 300 1 251 174 0 0 chr11 144255790 144255836 -6527717 - HAL1 LINE L1 0 2507 2462 222 316 300 16 chr11 144256336 144256586 -6526967 + L2 LINE L2 2213 2533 -781 1311 261 80 86 chr11 144257016 144257706 -6525847 - MER21B LTR ERV1 -149 714 29 2283 93 3 3 chr11 144258025 144258338 -6525215 - AluSq SINE Alu 0 313 1 185 354 73 0 chr11 144258599 144258681 -6524872 - L2 LINE L2 -640 2674 2587 3742 169 75 37 chr11 144258687 144258899 -6524654 - L1MB8 LINE L1 -161 6017 5814 2043 134 0 0 chr11 144258899 144259205 -6524348 - AluSx SINE Alu -6 306 1 3742 169 75 37 chr11 144259205 144259743 -6523810 - L1MB8 LINE L1 -364 5814 5209 2068 110 17 0 chr11 144259743 144260035 -6523518 - AluSq SINE Alu -16 297 1 3742 169 75 37 chr11 144260035 144260387 -6523166 - L1MB8 LINE L1 -969 5209 4872 456 267 42 78 chr11 144262561 144262752 -6520801 - MIR SINE MIR -65 143 10 414 229 167 35 chr11 144262863 144263007 -6520546 + MIR3 SINE MIR 35 197 -11 192 326 0 0 chr11 144262988 144263031 -6520522 + L3b LINE CR1 1530 1572 -11 * 1737 228 30 0 chr11 144263348 144263721 -6519832 - MLT1B LTR MaLR -6 384 1 190 354 197 0 chr11 144263769 144263916 -6519637 - MIR SINE MIR -14 248 73 2215 99 0 0 chr11 144266714 144267006 -6516547 - AluSc SINE Alu -12 297 6 907 169 7 7 chr11 144268622 144268776 -6514777 - FRAM SINE Alu -11 155 2 199 260 104 0 chr11 144268897 144268974 -6514579 - MIR3 SINE MIR -45 163 79 193 321 36 0 chr11 144269088 144269144 -6514409 - L2 LINE L2 -9 3263 3206 228 194 15 30 chr11 144269232 144269299 -6514254 + G-rich Low_complexity Low_complexity 4 69 0 293 310 42 35 chr11 144269622 144269764 -6513789 + MER5A DNA MER1_type 45 187 -2 286 57 0 0 chr11 144269987 144270022 -6513531 + U2 snRNA snRNA 1 35 -153 363 286 19 9 chr11 144270239 144270344 -6513209 + L2 LINE L2 3160 3265 -7 412 84 56 14 chr11 144270785 144270856 -6512697 + L1MB8 LINE L1 6104 6177 -1 1511 180 32 11 chr11 144270930 144271214 -6512339 + AluJo SINE Alu 14 303 -9 2195 65 3 14 chr11 144271460 144271752 -6511801 - AluSc SINE Alu -20 289 1 1020 188 16 0 chr11 144271755 144271941 -6511612 - MSTD LTR MaLR -207 189 1 665 174 0 25 chr11 144272184 144272305 -6511248 + FLAM_C SINE Alu 12 129 -14 2320 94 0 3 chr11 144272533 144272842 -6510711 + AluSg SINE Alu 1 308 -2 426 237 31 0 chr11 144273073 144273170 -6510383 - MIR SINE MIR -21 241 142 2504 44 0 0 chr11 144273175 144273473 -6510080 - AluY SINE Alu -13 298 1 265 178 68 27 chr11 144273967 144274040 -6509513 - L1ME2 LINE L1 -1 6163 6088 294 283 179 40 chr11 144274635 144274808 -6508745 + L2 LINE L2 2948 3144 -169 228 75 0 0 chr11 144274814 144274854 -6508699 - AluSp SINE Alu -4 299 260 1434 102 5 0 chr11 144274854 144275050 -6508503 - AluSp SINE Alu -103 210 14 2182 92 0 0 chr11 144275055 144275367 -6508186 - AluSq SINE Alu 0 313 2 223 386 31 31 chr11 144275377 144275540 -6508013 + L2 LINE L2 3110 3272 0 1662 178 11 0 chr11 144275545 144275832 -6507721 + AluJo SINE Alu 1 290 -22 2023 138 0 0 chr11 144275834 144276132 -6507421 + AluSx SINE Alu 1 298 -14 327 297 18 9 chr11 144276598 144276709 -6506844 - MLT1H LTR MaLR -2 547 436 254 256 60 101 chr11 144276845 144277013 -6506540 - MLT1H LTR MaLR -270 279 119 1726 164 31 10 chr11 144277632 144277924 -6505629 + AluJo SINE Alu 1 298 -14 2163 108 0 10 chr11 144278770 144279065 -6504488 + AluSx SINE Alu 19 310 -2 1992 154 16 0 chr11 144279070 144279375 -6504178 + AluSx SINE Alu 1 310 -2 875 289 159 64 chr11 144280107 144280837 -6502716 + L1ME4a LINE L1 5319 6117 -4 1643 163 34 0 chr11 144281216 144281480 -6502073 + AluJo SINE Alu 22 294 -18 196 182 0 0 chr11 144282329 144282362 -6501191 - L2 LINE L2 -23 3249 3217 2439 77 0 3 chr11 144282507 144282804 -6500749 - AluSc SINE Alu -11 298 3 2351 75 0 0 chr11 144282817 144283096 -6500457 - AluY SINE Alu -27 284 6 1921 177 0 3 chr11 144283103 144283414 -6500139 - AluJb SINE Alu -2 310 1 245 268 161 43 chr11 144283522 144283802 -6499751 - L1ME LINE L1 -264 5857 5545 656 243 119 6 chr11 144283907 144284084 -6499469 + MER3 DNA MER1_type 2 198 -11 1513 139 114 26 chr11 144284788 144285061 -6498492 + AluJo SINE Alu 2 298 -14 22 56 0 0 chr11 144286016 144286052 -6497501 + AT_rich Low_complexity Low_complexity 1 36 0 293 226 302 0 chr11 144288651 144288757 -6494796 - MIR SINE MIR -52 210 73 2330 87 24 0 chr11 144292792 144293090 -6490463 + AluSx SINE Alu 1 305 -7 437 286 62 0 chr11 144293407 144293519 -6490034 - L2 LINE L2 0 3272 3154 810 282 141 34 chr11 144293710 144294263 -6489290 - L2 LINE L2 -460 2854 2243 2157 150 0 0 chr11 144295040 144295346 -6488207 - AluSx SINE Alu -6 306 1 1769 140 72 10 chr11 144295383 144295675 -6487878 - AluJb SINE Alu -2 310 1 333 256 0 29 chr11 144296746 144296852 -6486701 + MER5A DNA MER1_type 53 144 -34 869 188 125 6 chr11 144296852 144297028 -6486525 - MER58A DNA MER1_type 0 224 28 422 158 348 61 chr11 144297153 144297317 -6486236 - MIR SINE MIR -44 218 8 2245 102 14 0 chr11 144297451 144297746 -6485807 + AluSx SINE Alu 1 299 -13 567 129 23 0 chr11 144299371 144299503 -6484050 + (TG)n Simple_repeat Simple_repeat 1 135 0 241 173 19 0 chr11 144299515 144299567 -6483986 + (TG)n Simple_repeat Simple_repeat 1 53 0 180 0 0 0 chr11 144299724 144299744 -6483809 + (TG)n Simple_repeat Simple_repeat 2 21 0 202 230 11 23 chr11 144299747 144299834 -6483719 + (GGGTG)n Simple_repeat Simple_repeat 1 86 0 2430 105 0 0 chr11 144300080 144300386 -6483167 + AluSq SINE Alu 1 306 -7 242 324 63 9 chr11 144302207 144302318 -6481235 - L2 LINE L2 -1 3312 3196 315 266 39 39 chr11 144302448 144302576 -6480977 - L2 LINE L2 -226 3046 2919 1954 214 6 3 chr11 144302595 144302959 -6480594 - MLT1A1 LTR MaLR 0 365 1 488 287 235 25 chr11 144303013 144303693 -6479860 - L2 LINE L2 -562 2752 1867 2090 132 3 19 chr11 144303783 144304093 -6479460 + AluJb SINE Alu 4 308 -4 2231 87 4 0 chr11 144304473 144304750 -6478803 + AluSp SINE Alu 21 298 -15 470 169 0 0 chr11 144305144 144305221 -6478332 + U13 snRNA snRNA 1 77 -27 445 234 171 17 chr11 144305388 144305563 -6477990 - MIR SINE MIR -33 229 28 317 242 42 42 chr11 144306124 144306242 -6477311 + MIR SINE MIR 78 192 -67 21 71 0 0 chr11 144306636 144306678 -6476875 + GC_rich Low_complexity Low_complexity 1 42 0 1300 231 126 52 chr11 144307438 144307509 -6476044 - L1ME3 LINE L1 -191 5971 5907 2278 102 10 0 chr11 144307509 144307812 -6475741 - AluSq SINE Alu -7 306 1 1300 231 126 52 chr11 144307812 144308052 -6475501 - L1ME3 LINE L1 -255 5907 5686 2286 108 0 0 chr11 144308052 144308349 -6475204 + AluSg SINE Alu 1 297 -13 1300 231 126 52 chr11 144308349 144308645 -6474908 - L1ME3 LINE L1 -476 5686 5318 212 143 24 0 chr11 144308705 144308747 -6474806 + (TA)n Simple_repeat Simple_repeat 2 44 0 2271 96 14 0 chr11 144308747 144309038 -6474515 - AluSg SINE Alu -15 295 1 555 279 30 12 chr11 144309041 144309206 -6474347 - L1ME3 LINE L1 -903 5243 5076 1728 161 3 53 chr11 144309234 144309556 -6473997 + AluJo SINE Alu 1 306 -6 2071 135 7 14 chr11 144309556 144309853 -6473700 + AluSx SINE Alu 1 295 -17 1074 165 114 6 chr11 144310239 144310652 -6472901 - MLT1D LTR MaLR 0 505 1 2476 83 0 3 chr11 144310796 144311096 -6472457 - AluSg SINE Alu -11 299 1 2128 135 0 0 chr11 144311228 144311531 -6472022 - AluSx SINE Alu -9 303 1 857 106 73 0 chr11 144311531 144311654 -6471899 - AluSq/x SINE Alu -177 135 4 29 60 0 0 chr11 144312342 144312392 -6471161 + AT_rich Low_complexity Low_complexity 1 50 0 2290 103 7 3 chr11 144312754 144313055 -6470498 - AluSq SINE Alu -11 302 1 339 253 63 63 chr11 144313331 144313521 -6470032 - L1ME3 LINE L1 -1470 4676 4487 581 292 153 0 chr11 144313527 144313743 -6469810 - MIR SINE MIR -1 261 13 2462 84 7 0 chr11 144315503 144315799 -6467754 + AluSg SINE Alu 2 299 -11 540 262 131 29 chr11 144316614 144316820 -6466733 + MIR SINE MIR 5 231 -31 22 0 0 0 chr11 144318219 144318241 -6465312 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 144318263 144318287 -6465266 + AT_rich Low_complexity Low_complexity 1 24 0 2224 109 0 10 chr11 144318294 144318588 -6464965 + AluSx SINE Alu 2 292 -20 2364 101 0 3 chr11 144318588 144318886 -6464667 + AluSc SINE Alu 1 297 -12 329 302 23 54 chr11 144318919 144319048 -6464505 - L1ME3 LINE L1 -75 6070 5946 518 299 104 17 chr11 144319097 144319413 -6464140 - L1ME3 LINE L1 -202 5951 5573 2448 95 0 7 chr11 144319413 144319717 -6463836 + AluSx SINE Alu 1 302 -10 518 299 104 17 chr11 144319717 144319910 -6463643 - L1ME3 LINE L1 -580 5573 5398 405 263 61 33 chr11 144319908 144320121 -6463432 - L1MC5 LINE L1 -30 7931 7713 * 2185 114 40 0 chr11 144320131 144320428 -6463125 - AluSq SINE Alu -4 309 1 622 281 136 41 chr11 144320437 144321241 -6462312 - L1ME3 LINE L1 -1014 5115 4224 1661 166 7 18 chr11 144321241 144321519 -6462034 - AluJb SINE Alu -34 278 4 622 281 136 41 chr11 144321519 144321567 -6461986 - L1ME3 LINE L1 -1905 4224 4182 233 303 90 0 chr11 144321612 144321701 -6461852 - L1ME3 LINE L1 -2039 4090 3994 2232 108 24 0 chr11 144321709 144322006 -6461547 - AluY SINE Alu -7 304 1 241 258 67 0 chr11 144322016 144322105 -6461448 - L1ME3 LINE L1 -2540 3589 3495 350 114 14 0 chr11 144322107 144322173 -6461380 - Alu SINE Alu -13 289 241 247 355 24 8 chr11 144322308 144322432 -6461121 - L1ME3 LINE L1 -5549 570 445 2368 104 0 7 chr11 144322524 144322833 -6460720 + AluSx SINE Alu 1 307 -5 476 283 64 23 chr11 144322963 144323182 -6460371 - L1ME3 LINE L1 -5886 233 6 2342 108 3 0 chr11 144323233 144323530 -6460023 - AluSx SINE Alu -9 303 6 584 194 89 0 chr11 144323602 144323726 -6459827 + MER3 DNA MER1_type 1 135 -74 1029 155 0 7 chr11 144323820 144323975 -6459578 - FRAM SINE Alu -16 160 7 638 287 45 61 chr11 144324072 144324140 -6459413 + L2 LINE L2 2826 2894 -419 2197 113 0 0 chr11 144324140 144324422 -6459131 - AluSx SINE Alu -26 286 5 638 287 45 61 chr11 144324422 144324600 -6458953 + L2 LINE L2 2894 3068 -245 2182 130 20 0 chr11 144324606 144324898 -6458655 + AluSx SINE Alu 1 298 -14 2651 55 0 3 chr11 144324970 144325282 -6458271 + AluY SINE Alu 1 311 0 298 307 22 0 chr11 144325384 144325476 -6458077 - MIR SINE MIR -72 136 38 2048 75 4 4 chr11 144325508 144325773 -6457780 + AluSg SINE Alu 1 265 -45 234 0 0 0 chr11 144325805 144325831 -6457722 + (CA)n Simple_repeat Simple_repeat 1 26 0 251 136 23 0 chr11 144325949 144325993 -6457560 - Alu SINE Alu -254 45 1 255 46 108 0 chr11 144325993 144326058 -6457495 + (TTTG)n Simple_repeat Simple_repeat 4 75 0 362 236 89 57 chr11 144326128 144326251 -6457302 + MIR SINE MIR 22 148 -60 2267 123 0 0 chr11 144326363 144326656 -6456897 + AluSx SINE Alu 1 293 -19 850 168 78 39 chr11 144327140 144327319 -6456234 + MER20 DNA MER1_type 31 216 -3 2233 133 0 10 chr11 144327320 144327629 -6455924 + AluSx SINE Alu 1 306 -6 2247 84 7 3 chr11 144327695 144327980 -6455573 - AluSg SINE Alu -24 286 1 540 214 203 27 chr11 144328043 144328230 -6455323 - MIR SINE MIR -42 220 1 207 233 0 0 chr11 144328263 144328306 -6455247 - L2 LINE L2 -92 3221 3179 190 277 0 0 chr11 144328496 144328543 -6455010 + L3 LINE CR1 1526 1572 -5 2024 88 62 43 chr11 144329281 144329586 -6453967 - AluSq SINE Alu -2 311 1 1560 152 136 0 chr11 144329607 144329909 -6453644 + MER2 DNA MER2_type 2 344 0 361 221 15 17 chr11 144330046 144330162 -6453391 - MER58B DNA MER1_type -3 338 92 239 269 148 28 chr11 144330182 144330290 -6453263 - MER58B DNA MER1_type -220 121 1 465 263 160 0 chr11 144330306 144330462 -6453091 + MER5A DNA MER1_type 9 189 0 450 206 23 46 chr11 144330472 144330603 -6452950 + L2 LINE L2 2208 2335 -979 209 324 59 0 chr11 144330673 144330741 -6452812 - L2 LINE L2 -37 3235 3164 259 232 32 74 chr11 144331518 144331613 -6451940 + MIR SINE MIR 7 97 -165 512 323 150 28 chr11 144331617 144332017 -6451536 - L2 LINE L2 -1 3271 2823 2246 116 0 0 chr11 144332210 144332502 -6451051 - AluSq SINE Alu -21 292 1 247 273 29 101 chr11 144332503 144332589 -6450964 + MER112 DNA MER1_type 89 163 -97 2227 105 0 34 chr11 144332589 144332912 -6450641 - AluSx SINE Alu 0 312 1 247 273 29 101 chr11 144332912 144332964 -6450589 + MER112 DNA MER1_type 163 217 -43 513 260 93 31 chr11 144333641 144333899 -6449654 + L1ME3A LINE L1 5678 5951 -219 308 322 63 63 chr11 144333970 144334175 -6449378 + L1ME3A LINE L1 5965 6169 -1 1496 107 9 0 chr11 144334389 144334613 -6448940 - L1PA15 LINE L1 -181 5984 5759 4531 85 20 1 chr11 144334613 144335258 -6448295 + L1PB1 LINE L1 5493 6151 0 603 160 7 9 chr11 144335258 144335363 -6448190 + L1PB1 LINE L1 5646 5751 -404 1047 140 17 0 chr11 144335363 144335537 -6448016 + L1PA15 LINE L1 5984 6165 0 2150 158 0 0 chr11 144335549 144335860 -6447693 + AluJb SINE Alu 1 311 -1 2033 137 14 0 chr11 144335992 144336284 -6447269 - AluSx SINE Alu -16 296 1 1268 91 115 14 chr11 144336506 144336715 -6446838 - MER30 DNA MER1_type 0 230 1 295 286 158 30 chr11 144336715 144336918 -6446635 - HAL1 LINE L1 -574 1933 1705 2282 94 3 13 chr11 144336918 144337227 -6446326 - AluSx SINE Alu -6 306 1 2645 50 0 3 chr11 144337229 144337531 -6446022 - AluY SINE Alu -10 301 1 652 333 53 38 chr11 144337536 144337878 -6445675 - HAL1 LINE L1 -1348 1159 813 557 128 0 21 chr11 144340072 144340166 -6443387 + MIR SINE MIR 35 126 -136 447 143 0 0 chr11 144340277 144340347 -6443206 - AluS SINE Alu -6 294 225 721 133 0 0 chr11 144340353 144340458 -6443095 - AluSq/x SINE Alu -206 106 2 379 310 120 5 chr11 144340489 144340673 -6442880 - L2 LINE L2 -25 3288 3084 1598 185 84 0 chr11 144340793 144341080 -6442473 + AluJo SINE Alu 1 311 -1 2108 257 122 58 chr11 144341142 144341246 -6442307 + HAL1 LINE L1 366 462 -2045 1874 164 10 0 chr11 144341246 144341545 -6442008 + AluJb SINE Alu 1 302 -10 2108 257 122 58 chr11 144341545 144342525 -6441028 + HAL1 LINE L1 462 1377 -1130 2230 132 0 0 chr11 144342525 144342836 -6440717 - AluSx SINE Alu -1 311 1 2108 257 122 58 chr11 144342836 144342869 -6440684 + HAL1 LINE L1 1377 1406 -1101 1698 77 0 5 chr11 144342869 144343076 -6440477 - AluSc SINE Alu -16 293 88 2108 257 122 58 chr11 144343076 144343111 -6440442 + HAL1 LINE L1 1406 1437 -1070 1686 186 7 10 chr11 144343111 144343401 -6440152 - AluJo SINE Alu -23 289 1 2108 257 122 58 chr11 144343401 144343512 -6440041 + HAL1 LINE L1 1437 1714 -793 1966 129 58 14 chr11 144343800 144344094 -6439459 - AluJb SINE Alu -5 307 1 2466 80 3 0 chr11 144344103 144344403 -6439150 - AluSp SINE Alu -12 301 1 408 322 22 63 chr11 144344976 144345246 -6438307 - L2 LINE L2 -13 3300 3042 180 0 0 0 chr11 144346133 144346153 -6437400 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1246 136 0 6 chr11 144346334 144346510 -6437043 - AluSq SINE Alu -138 175 1 305 332 128 45 chr11 144346663 144347085 -6436468 - L2 LINE L2 -3 3269 2813 248 350 28 14 chr11 144347115 144347233 -6436320 + MER5B DNA MER1_type 1 123 -55 243 0 0 0 chr11 144347233 144347260 -6436293 + (TC)n Simple_repeat Simple_repeat 2 28 0 248 350 28 14 chr11 144347260 144347284 -6436269 + MER5B DNA MER1_type 123 145 -33 287 195 6 129 chr11 144347630 144347695 -6435858 - MIR SINE MIR -13 249 178 2321 98 0 0 chr11 144347695 144348011 -6435542 - AluSq SINE Alu 0 316 1 287 195 6 129 chr11 144348011 144348099 -6435454 - MIR SINE MIR -84 178 15 269 339 63 8 chr11 144348291 144348418 -6435135 + MIR SINE MIR 103 236 -26 183 261 0 22 chr11 144348968 144349014 -6434539 + MIR SINE MIR 106 150 -112 2142 110 40 7 chr11 144349016 144349317 -6434236 + AluSq SINE Alu 3 313 0 1427 92 49 0 chr11 144349318 144349502 -6434051 + AluSg/x SINE Alu 109 301 -11 206 233 116 35 chr11 144349754 144349840 -6433713 - MIR SINE MIR -43 219 127 1221 128 0 12 chr11 144353691 144353863 -6429690 - AluSg/x SINE Alu -14 298 129 216 255 59 0 chr11 144354147 144354198 -6429355 - L2 LINE L2 -1 3271 3218 2387 69 35 0 chr11 144356166 144356455 -6427098 + AluSg SINE Alu 2 300 -10 259 250 20 80 chr11 144357317 144357417 -6426136 + MIR SINE MIR 35 128 -80 1261 129 59 5 chr11 144360270 144360472 -6423081 + AluSg/x SINE Alu 96 308 -4 2364 95 0 13 chr11 144360591 144360896 -6422657 - AluSx SINE Alu -11 301 1 251 209 116 23 chr11 144361092 144361178 -6422375 + MIR SINE MIR 70 163 -99 251 300 133 0 chr11 144361224 144361314 -6422239 - MIR3 SINE MIR -26 182 81 213 295 22 22 chr11 144362638 144362777 -6420776 + GA-rich Low_complexity Low_complexity 2 140 0 195 279 44 0 chr11 144365996 144366064 -6417489 - MIR SINE MIR -74 188 118 394 256 118 47 chr11 144366076 144366261 -6417292 + MIR SINE MIR 5 208 -54 2206 118 10 0 chr11 144366261 144366557 -6416996 + AluSx SINE Alu 1 299 -13 394 256 118 47 chr11 144366557 144366582 -6416971 + MIR SINE MIR 208 230 -32 684 138 32 24 chr11 144366615 144366738 -6416815 + AluSq/x SINE Alu 2 125 -188 379 291 13 73 chr11 144367267 144367418 -6416135 - MER91A DNA MER1_type -8 188 47 2153 115 3 26 chr11 144367626 144367938 -6415615 - AluSq SINE Alu -2 311 7 282 311 113 20 chr11 144368244 144368847 -6414706 - L1ME4a LINE L1 -155 5966 5307 1955 131 34 7 chr11 144369075 144369366 -6414187 - AluSx SINE Alu -13 299 1 24 67 0 0 chr11 144369373 144369418 -6414135 + AT_rich Low_complexity Low_complexity 1 45 0 2528 80 0 0 chr11 144369562 144369861 -6413692 - AluSg SINE Alu -11 299 1 653 318 50 12 chr11 144369963 144370300 -6413253 - L1ME3A LINE L1 -295 5875 5526 258 240 70 0 chr11 144370309 144370409 -6413144 - L1P5 LINE L1 -717 5434 5328 1595 181 25 6 chr11 144370476 144370611 -6412942 - L1MB3 LINE L1 -36 6147 6013 701 230 25 145 chr11 144370611 144370802 -6412751 - L1MC4 LINE L1 -2034 6008 5796 2369 103 6 0 chr11 144370802 144371113 -6412440 - AluSp SINE Alu 0 313 1 701 230 25 145 chr11 144371113 144371159 -6412394 - L1MC4 LINE L1 -2246 5796 5461 1190 155 32 0 chr11 144371159 144371408 -6412145 - L1MB3 LINE L1 -341 5830 5569 365 282 0 19 chr11 144372383 144372486 -6411067 - L2 LINE L2 0 3313 3213 2254 126 0 7 chr11 144372568 144372877 -6410676 + AluSx SINE Alu 1 307 -5 254 326 67 8 chr11 144372887 144373162 -6410391 - L2 LINE L2 -296 3017 2725 450 314 76 0 chr11 144373897 144374069 -6409484 + MIR SINE MIR 46 230 -32 794 213 35 6 chr11 144374080 144374254 -6409299 + MER20 DNA MER1_type 41 219 0 198 103 0 0 chr11 144374259 144374288 -6409265 + (T)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr11 144374642 144374665 -6408888 + AT_rich Low_complexity Low_complexity 1 23 0 587 317 55 28 chr11 144374671 144374996 -6408557 - MER93a LTR ERV1 -3 399 66 383 283 35 14 chr11 144375308 144375453 -6408100 - MER57-int LTR ERV1 -570 6967 6820 2341 109 0 0 chr11 144375575 144375868 -6407685 - AluSx SINE Alu -19 293 1 2106 104 34 14 chr11 144375874 144376171 -6407382 - AluSx SINE Alu -9 303 1 1999 89 8 0 chr11 144376810 144377067 -6406486 - AluY SINE Alu -16 295 37 394 340 42 60 chr11 144377773 144377861 -6405692 - MER57-int LTR ERV1 -1383 6154 6066 2289 125 0 0 chr11 144377861 144378174 -6405379 - AluSq SINE Alu 0 313 1 394 340 42 60 chr11 144378174 144378376 -6405177 - MER57-int LTR ERV1 -1471 6066 5862 2252 107 7 3 chr11 144378376 144378676 -6404877 + AluSx SINE Alu 1 299 -13 394 340 42 60 chr11 144378676 144379043 -6404510 - MER57-int LTR ERV1 -1675 5862 2355 213 295 22 22 chr11 144379839 144379978 -6403575 + GA-rich Low_complexity Low_complexity 2 140 0 369 273 25 37 chr11 144383384 144383545 -6400008 - MIR SINE MIR -19 243 85 2300 71 14 0 chr11 144383553 144383850 -6399703 - AluY SINE Alu -10 301 1 339 318 101 11 chr11 144383903 144384082 -6399471 + MIR SINE MIR 5 199 -63 913 122 0 0 chr11 144384132 144384255 -6399298 + FLAM_C SINE Alu 5 127 -6 223 313 175 14 chr11 144384268 144384485 -6399068 + L2 LINE L2 2720 2971 -343 384 278 13 73 chr11 144385247 144385398 -6398155 - MER91A DNA MER1_type -8 188 47 192 277 0 0 chr11 144385902 144385949 -6397604 + L3 LINE CR1 1526 1572 -5 1988 87 59 24 chr11 144386705 144386994 -6396559 - AluSq SINE Alu -14 299 1 1676 156 136 0 chr11 144387015 144387317 -6396236 + MER2 DNA MER2_type 2 344 0 360 284 43 0 chr11 144387454 144387570 -6395983 - MER58C DNA MER1_type -3 212 92 465 269 160 0 chr11 144387714 144387870 -6395683 + MER5A DNA MER1_type 9 189 0 455 229 8 30 chr11 144387880 144388011 -6395542 + L2 LINE L2 2208 2335 -979 216 324 59 0 chr11 144388081 144388149 -6395404 - L2 LINE L2 -37 3235 3164 269 232 32 74 chr11 144388926 144389021 -6394532 + MIR SINE MIR 7 97 -165 542 325 150 28 chr11 144389025 144389425 -6394128 - L2 LINE L2 -1 3271 2823 2115 116 0 0 chr11 144389618 144389910 -6393643 - AluSq SINE Alu -21 292 1 253 273 29 101 chr11 144389911 144389997 -6393556 + MER112 DNA MER1_type 89 163 -97 2094 105 0 34 chr11 144389997 144390320 -6393233 - AluSx SINE Alu 0 312 1 253 273 29 101 chr11 144390320 144390372 -6393181 + MER112 DNA MER1_type 163 217 -43 525 260 93 31 chr11 144391052 144391310 -6392243 + L1ME3A LINE L1 5678 5951 -219 1493 144 23 5 chr11 144391800 144392034 -6391519 - L1PA15 LINE L1 -181 5984 5728 4835 83 20 1 chr11 144392034 144392669 -6390884 + L1PB1 LINE L1 5493 6151 0 1493 144 23 5 chr11 144392669 144392743 -6390810 - L1PA15 LINE L1 -437 5728 5657 615 157 0 10 chr11 144392684 144392786 -6390767 + L1PA15 LINE L1 5662 5762 -403 * 1135 140 17 0 chr11 144392786 144392948 -6390605 + L1PA15 LINE L1 5984 6165 0 2036 154 0 0 chr11 144392960 144393271 -6390282 + AluJb SINE Alu 1 311 -1 1908 137 14 0 chr11 144393403 144393695 -6389858 - AluSx SINE Alu -16 296 1 745 313 113 36 chr11 144393796 144393917 -6389636 - HAL1 LINE L1 -427 2080 1970 1370 91 115 14 chr11 144393917 144394126 -6389427 - MER30 DNA MER1_type 0 230 1 745 313 113 36 chr11 144394126 144394329 -6389224 - HAL1 LINE L1 -537 1970 1784 2159 93 3 13 chr11 144394329 144394639 -6388914 - AluSx SINE Alu -5 307 1 2468 53 0 3 chr11 144394639 144394940 -6388613 - AluY SINE Alu -11 300 1 745 313 113 36 chr11 144394940 144395287 -6388266 - HAL1 LINE L1 -722 1785 813 560 128 0 21 chr11 144397481 144397575 -6385978 + MIR SINE MIR 35 126 -136 451 141 0 0 chr11 144397686 144397757 -6385796 - AluS SINE Alu -5 295 225 762 133 0 0 chr11 144397763 144397868 -6385685 - AluSq/x SINE Alu -206 106 2 390 310 120 5 chr11 144397899 144398083 -6385470 - L2 LINE L2 -25 3288 3084 1499 185 84 0 chr11 144398203 144398490 -6385063 + AluJo SINE Alu 1 311 -1 2132 256 126 58 chr11 144398552 144398656 -6384897 + HAL1 LINE L1 366 462 -2045 1808 156 10 0 chr11 144398656 144398957 -6384596 + AluJb SINE Alu 1 304 -8 2132 256 126 58 chr11 144398957 144399938 -6383615 + HAL1 LINE L1 462 1376 -1131 2084 135 0 0 chr11 144399938 144400250 -6383303 - AluSx SINE Alu 0 312 1 2132 256 126 58 chr11 144400250 144400279 -6383274 + HAL1 LINE L1 1376 1402 -1105 1625 80 0 5 chr11 144400279 144400491 -6383062 - AluSc SINE Alu -11 298 88 2132 256 126 58 chr11 144400491 144400526 -6383027 + HAL1 LINE L1 1402 1433 -1074 1575 186 7 10 chr11 144400526 144400816 -6382737 - AluJo SINE Alu -23 289 1 2132 256 126 58 chr11 144400816 144400927 -6382626 + HAL1 LINE L1 1433 1714 -793 1928 123 58 10 chr11 144401216 144401508 -6382045 - AluJb SINE Alu -6 306 1 2079 118 3 7 chr11 144401514 144401818 -6381735 - AluSx SINE Alu -9 303 1 26 50 0 0 chr11 144401869 144401909 -6381644 + AT_rich Low_complexity Low_complexity 1 40 0 1397 179 6 70 chr11 144402149 144402461 -6381092 - AluJo SINE Alu -20 292 1 932 251 52 102 chr11 144402461 144402587 -6380966 + HAL1 LINE L1 1932 2063 -444 2087 111 3 19 chr11 144402587 144402903 -6380650 + AluSx SINE Alu 1 311 -1 932 251 52 102 chr11 144402903 144403377 -6380176 + HAL1 LINE L1 2063 2502 -5 2175 114 0 0 chr11 144403523 144403829 -6379724 + AluSc SINE Alu 1 306 -3 442 216 80 57 chr11 144404027 144404203 -6379350 + MIR SINE MIR 42 221 -41 419 192 64 32 chr11 144404259 144404327 -6379226 - L1MC4 LINE L1 -11 8031 7956 2591 48 0 0 chr11 144404327 144404638 -6378915 + AluY SINE Alu 1 311 0 419 192 64 32 chr11 144404638 144404694 -6378859 - L1MC4 LINE L1 -86 7956 7903 1355 257 116 26 chr11 144404724 144405269 -6378284 - L1MC4 LINE L1 -250 7792 7199 493 309 143 21 chr11 144405460 144405893 -6377660 - L2 LINE L2 0 3313 2828 870 254 12 25 chr11 144406497 144406741 -6376812 - MIR SINE MIR -20 242 2 420 263 112 0 chr11 144407043 144407195 -6376358 - MIR SINE MIR -86 176 8 189 396 11 0 chr11 144407321 144407412 -6376141 + MIR SINE MIR 20 111 -151 1199 151 42 19 chr11 144407847 144408059 -6375494 + MER20 DNA MER1_type 3 219 0 872 216 34 93 chr11 144408071 144408339 -6375214 - MIR SINE MIR -9 253 2 234 0 0 0 chr11 144408377 144408403 -6375150 + (TA)n Simple_repeat Simple_repeat 2 27 0 2415 77 3 0 chr11 144408403 144408713 -6374840 - AluSp SINE Alu -2 311 1 443 322 22 63 chr11 144409286 144409556 -6373997 - L2 LINE L2 -13 3300 3042 180 0 0 0 chr11 144410443 144410463 -6373090 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1172 136 0 6 chr11 144410644 144410820 -6372733 - AluSq SINE Alu -138 175 1 368 329 139 52 chr11 144410973 144411341 -6372212 - L2 LINE L2 -3 3269 2870 265 350 28 14 chr11 144411425 144411543 -6372010 + MER5B DNA MER1_type 1 123 -55 279 0 0 0 chr11 144411543 144411574 -6371979 + (TC)n Simple_repeat Simple_repeat 2 32 0 265 350 28 14 chr11 144411574 144411598 -6371955 + MER5B DNA MER1_type 123 145 -33 296 195 6 127 chr11 144411944 144412009 -6371544 - MIR SINE MIR -13 249 178 2146 105 0 0 chr11 144412009 144412325 -6371228 - AluSq SINE Alu 0 316 1 296 195 6 127 chr11 144412325 144412423 -6371130 - MIR SINE MIR -84 178 6 279 339 63 8 chr11 144412605 144412732 -6370821 + MIR SINE MIR 103 236 -26 180 261 0 22 chr11 144413282 144413328 -6370225 + MIR SINE MIR 106 150 -112 1973 113 40 7 chr11 144413330 144413631 -6369922 + AluSq SINE Alu 3 313 0 1350 92 49 0 chr11 144413632 144413817 -6369736 + AluSg/x SINE Alu 107 300 -10 215 302 81 0 chr11 144414069 144414155 -6369398 - MIR SINE MIR -43 219 127 1149 128 0 12 chr11 144418006 144418178 -6365375 - AluSg/x SINE Alu -14 298 129 215 255 59 0 chr11 144418462 144418513 -6365040 - L2 LINE L2 -1 3312 3259 2260 66 35 0 chr11 144420481 144420769 -6362784 + AluSg SINE Alu 2 299 -11 270 250 20 80 chr11 144421631 144421731 -6361822 + MIR SINE MIR 35 128 -80 1189 129 59 5 chr11 144424584 144424786 -6358767 + AluSg/x SINE Alu 96 308 -4 2317 83 7 0 chr11 144424903 144425205 -6358348 - AluSx SINE Alu -8 304 1 301 365 35 0 chr11 144426368 144426483 -6357070 + L2 LINE L2 3116 3234 -38 337 252 72 9 chr11 144426612 144426723 -6356830 + L2 LINE L2 3194 3311 -2 2104 132 71 32 chr11 144427869 144428051 -6355502 - L1MA8 LINE L1 -7 6284 6111 1943 114 35 7 chr11 144428051 144428340 -6355213 - AluSx SINE Alu -15 297 1 2104 132 71 32 chr11 144428340 144428537 -6355016 - L1MA8 LINE L1 -180 6111 5890 272 243 343 0 chr11 144428790 144428930 -6354623 + MIR SINE MIR 65 252 -10 1494 160 117 19 chr11 144428983 144429308 -6354245 + MLT1A1 LTR MaLR 1 357 -8 2084 110 10 0 chr11 144429371 144429670 -6353883 - AluSx SINE Alu -10 302 1 327 335 110 19 chr11 144430412 144430675 -6352878 + HAL1 LINE L1 908 1194 -1313 216 158 0 0 chr11 144430676 144430714 -6352839 + GA-rich Low_complexity Low_complexity 1 38 0 197 214 0 24 chr11 144431112 144431154 -6352399 - MIR SINE MIR -125 83 43 207 345 60 0 chr11 144431288 144431372 -6352181 + MIR SINE MIR 63 151 -57 215 213 163 0 chr11 144431397 144431477 -6352076 + L2 LINE L2 3212 3304 -9 2290 52 0 0 chr11 144431477 144431785 -6351768 + AluSc SINE Alu 13 320 0 189 0 0 0 chr11 144433213 144433234 -6350319 + (CGGGG)n Simple_repeat Simple_repeat 1 21 0 272 267 13 0 chr11 144434297 144434372 -6349181 + MIR SINE MIR 184 259 -3 535 269 137 0 chr11 144436653 144436828 -6346725 - MIR SINE MIR -44 218 20 311 276 19 48 chr11 144436860 144436965 -6346588 - MIR SINE MIR -63 145 44 285 98 0 0 chr11 144437064 144437105 -6346448 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 518 173 0 0 chr11 144437670 144437751 -6345802 - AluJb SINE Alu -147 165 85 2285 93 7 0 chr11 144437751 144438061 -6345492 - AluSq SINE Alu -1 312 1 353 286 0 22 chr11 144438066 144438157 -6345396 + L2 LINE L2 3223 3311 -2 2154 120 0 0 chr11 144439220 144439520 -6344033 - AluSx SINE Alu -12 300 1 2291 102 0 9 chr11 144439524 144439839 -6343714 - AluSx SINE Alu 0 312 1 257 256 93 0 chr11 144440035 144440121 -6343432 + MIR SINE MIR 70 163 -99 256 300 133 0 chr11 144440167 144440257 -6343296 - MIR3 SINE MIR -26 182 81 213 295 22 22 chr11 144441581 144441720 -6341833 + GA-rich Low_complexity Low_complexity 2 140 0 204 318 23 47 chr11 144444877 144445006 -6338547 - MIR SINE MIR -19 243 118 406 287 105 24 chr11 144445018 144445203 -6338350 + MIR SINE MIR 5 210 -52 2098 117 10 0 chr11 144445203 144445501 -6338052 + AluSx SINE Alu 1 301 -11 406 287 105 24 chr11 144445501 144445524 -6338029 + MIR SINE MIR 210 230 -32 807 131 25 0 chr11 144445556 144445678 -6337875 + AluSq/x SINE Alu 1 125 -187 388 305 7 66 chr11 144446207 144446358 -6337195 - MER91A DNA MER1_type -8 188 47 2034 115 3 26 chr11 144446566 144446878 -6336675 - AluSq SINE Alu -2 311 7 313 311 113 20 chr11 144447184 144447787 -6335766 - L1ME4a LINE L1 -155 5966 5307 1882 133 34 3 chr11 144448011 144448305 -6335248 - AluSx SINE Alu -9 303 1 24 67 0 0 chr11 144448312 144448357 -6335196 + AT_rich Low_complexity Low_complexity 1 45 0 2453 84 0 0 chr11 144448510 144448820 -6334733 - AluSg SINE Alu 0 310 1 698 332 42 3 chr11 144448922 144449259 -6334294 - L1ME3A LINE L1 -295 5875 5526 262 240 70 0 chr11 144449268 144449368 -6334185 - L1P5 LINE L1 -717 5434 5328 1607 181 25 6 chr11 144449435 144449570 -6333983 - L1MB3 LINE L1 -36 6147 6013 739 228 25 145 chr11 144449570 144449761 -6333792 - L1MC4 LINE L1 -2034 6008 5796 2235 103 6 0 chr11 144449761 144450072 -6333481 - AluSp SINE Alu 0 313 1 739 228 25 145 chr11 144450072 144450118 -6333435 - L1MC4 LINE L1 -2246 5796 5461 1193 150 32 0 chr11 144450118 144450367 -6333186 - L1MB3 LINE L1 -341 5830 5569 368 282 0 19 chr11 144451342 144451445 -6332108 - L2 LINE L2 0 3313 3213 2092 129 0 7 chr11 144451527 144451836 -6331717 + AluSx SINE Alu 1 307 -5 282 341 62 3 chr11 144451846 144452121 -6331432 - L2 LINE L2 -296 3017 2725 1111 146 14 42 chr11 144453119 144453332 -6330221 - AluJo SINE Alu -6 306 100 467 288 98 0 chr11 144453348 144453511 -6330042 - MIR SINE MIR -14 248 70 2407 89 0 0 chr11 144454012 144454325 -6329228 - AluSp SINE Alu 0 313 1 24 32 0 0 chr11 144454508 144454539 -6329014 + AT_rich Low_complexity Low_complexity 1 31 0 619 141 0 0 chr11 144454557 144454656 -6328897 - AluSg/x SINE Alu -9 303 205 2064 227 50 7 chr11 144454699 144455161 -6328392 + LTR16C LTR ERVL 8 489 -2 2187 106 0 0 chr11 144456244 144456536 -6327017 + AluSc SINE Alu 1 292 -17 231 36 0 0 chr11 144457652 144457680 -6325873 + (TG)n Simple_repeat Simple_repeat 2 29 0 225 119 0 0 chr11 144457681 144457723 -6325830 + (GA)n Simple_repeat Simple_repeat 2 43 0 410 267 46 7 chr11 144459174 144459319 -6324234 + MIR SINE MIR 70 221 -41 891 188 44 6 chr11 144459439 144459620 -6323933 + MER20 DNA MER1_type 32 219 0 1463 155 17 45 chr11 144459760 144460083 -6323470 + AluJo SINE Alu 1 315 0 631 215 49 14 chr11 144460409 144460553 -6323000 - MIR SINE MIR -74 188 40 241 239 90 0 chr11 144461824 144461891 -6321662 - MIR SINE MIR -69 193 121 2253 90 3 3 chr11 144462025 144462336 -6321217 - AluSx SINE Alu -1 311 1 1046 201 127 9 chr11 144462350 144462688 -6320865 - L1M4 LINE L1 -897 5249 4872 425 275 41 58 chr11 144464861 144465032 -6318521 - MIR SINE MIR -79 183 16 378 229 167 35 chr11 144465163 144465307 -6318246 + MIR3 SINE MIR 35 197 -11 180 326 0 0 chr11 144465288 144465331 -6318222 + L3b LINE CR1 1530 1572 -11 * 1772 225 30 0 chr11 144465648 144466021 -6317532 - MLT1B LTR MaLR -6 384 1 219 327 168 0 chr11 144466069 144466176 -6317377 - MIR SINE MIR -14 248 124 2237 99 0 0 chr11 144469014 144469306 -6314247 - AluSc SINE Alu -12 297 6 928 169 7 7 chr11 144470921 144471075 -6312478 - FRAM SINE Alu -11 155 2 198 260 104 0 chr11 144471196 144471273 -6312280 - MIR3 SINE MIR -45 163 79 180 321 36 0 chr11 144471387 144471443 -6312110 - L2 LINE L2 -9 3263 3206 228 194 15 30 chr11 144471531 144471598 -6311955 + G-rich Low_complexity Low_complexity 4 69 0 366 316 17 8 chr11 144471915 144472057 -6311496 - MER5A DNA MER1_type -33 156 3 271 57 0 0 chr11 144472280 144472315 -6311238 + U2 snRNA snRNA 1 35 -153 357 286 19 9 chr11 144472532 144472637 -6310916 + L2 LINE L2 3160 3265 -7 420 84 56 14 chr11 144473078 144473149 -6310404 + L1MB8 LINE L1 6104 6177 -1 1586 181 31 10 chr11 144473223 144473516 -6310037 + AluJo SINE Alu 14 312 0 1816 129 86 0 chr11 144473537 144473817 -6309736 + AluSx SINE Alu 1 304 -8 204 180 40 0 chr11 144473937 144473987 -6309566 + L3b LINE CR1 1182 1233 -350 328 205 24 110 chr11 144474311 144474369 -6309184 + MER94 DNA DNA 19 63 -71 1614 164 21 14 chr11 144474369 144474674 -6308879 + AluJb SINE Alu 1 307 0 328 205 24 110 chr11 144474674 144474741 -6308812 + MER94 DNA DNA 63 134 0 4454 161 19 29 chr11 144475352 144475713 -6307840 - L1MB8 LINE L1 -1 6177 5814 1425 122 61 113 chr11 144475713 144476042 -6307511 - AluJo SINE Alu 0 312 1 4454 161 19 29 chr11 144476042 144476431 -6307122 - L1MB8 LINE L1 -364 5814 5440 2221 91 3 3 chr11 144476431 144476729 -6306824 - AluSc SINE Alu -11 298 1 4454 161 19 29 chr11 144476729 144477107 -6306446 - L1MB8 LINE L1 -738 5440 5060 213 286 86 0 chr11 144477180 144477250 -6306303 - MER91A DNA MER1_type -3 193 118 1990 138 3 3 chr11 144477793 144478089 -6305464 - AluJb SINE Alu -16 296 1 1677 185 28 0 chr11 144478417 144478703 -6304850 + AluJo SINE Alu 1 294 -18 1388 137 0 0 chr11 144478860 144479072 -6304481 + AluJo SINE Alu 1 212 -100 228 225 75 25 chr11 144479710 144479790 -6303763 + 7SK RNA RNA 14 97 -96 1578 266 117 40 chr11 144479795 144480298 -6303255 + MLT1E LTR MaLR 3 553 -40 2320 106 3 0 chr11 144480298 144480601 -6302952 + AluSq SINE Alu 2 305 -8 1578 266 117 40 chr11 144480601 144480645 -6302908 + MLT1E LTR MaLR 553 592 -1 296 328 70 12 chr11 144481107 144481278 -6302275 - MIR3 SINE MIR -14 194 14 222 239 57 57 chr11 144481860 144481948 -6301605 + L2 LINE L2 3000 3087 -185 554 294 25 6 chr11 144482075 144482238 -6301315 - LTR16A LTR ERVL -92 358 193 290 278 87 24 chr11 144482400 144482526 -6301027 - L3 LINE CR1 -313 1264 1131 2867 158 58 12 chr11 144482536 144483105 -6300448 + Tigger3b DNA MER2_type 2 596 -635 1884 162 0 43 chr11 144483119 144483446 -6300107 - AluSq SINE Alu 0 313 1 208 297 60 61 chr11 144484097 144484250 -6299303 - MIR SINE MIR -58 150 16 281 295 41 41 chr11 144484980 144485102 -6298451 - MIR SINE MIR -129 133 12 2339 57 0 53 chr11 144485340 144485641 -6297912 + AluY SINE Alu 1 285 -26 269 208 0 0 chr11 144485666 144485719 -6297834 + MER5B DNA MER1_type 126 178 0 1824 159 6 34 chr11 144486174 144486350 -6297203 - AluJb SINE Alu 0 312 148 270 0 0 0 chr11 144486350 144486380 -6297173 + (TA)n Simple_repeat Simple_repeat 2 31 0 1824 159 6 34 chr11 144486380 144486524 -6297029 - AluJb SINE Alu -164 148 1 2532 84 0 3 chr11 144486535 144486845 -6296708 - AluSg SINE Alu -1 309 1 1559 195 20 13 chr11 144486898 144487200 -6296353 + AluJo SINE Alu 1 304 -8 290 394 75 16 chr11 144487436 144487624 -6295929 - L3b LINE CR1 -11 1572 1374 321 285 44 51 chr11 144487958 144488077 -6295476 + L2 LINE L2 3116 3235 -37 2231 89 46 62 chr11 144488077 144488377 -6295176 + THE1B LTR MaLR 1 295 -69 2125 141 0 6 chr11 144488377 144488689 -6294864 + AluSx SINE Alu 1 310 -2 2231 89 46 62 chr11 144488689 144488758 -6294795 + THE1B LTR MaLR 295 364 0 321 285 44 51 chr11 144488758 144488796 -6294757 + L2 LINE L2 3235 3272 0 244 162 243 27 chr11 144489822 144489896 -6293657 - MIR SINE MIR -10 252 163 207 162 0 0 chr11 144490466 144490503 -6293050 + (CAT)n Simple_repeat Simple_repeat 2 38 0 1550 122 79 73 chr11 144491940 144492243 -6291310 - AluJo SINE Alu -7 305 1 342 287 10 0 chr11 144492456 144492557 -6290996 + MIR SINE MIR 32 133 -75 1820 147 77 0 chr11 144492827 144493112 -6290441 - AluSx SINE Alu -3 309 3 199 311 22 22 chr11 144494305 144494395 -6289158 - MIR SINE MIR -99 109 20 431 237 51 77 chr11 144494674 144494788 -6288765 - MIR SINE MIR -15 247 137 5772 34 4 0 chr11 144494788 144495497 -6288056 + L1PA5 LINE L1 5440 6151 -3 431 237 51 77 chr11 144495497 144495538 -6288015 - MIR SINE MIR -125 137 96 205 113 75 38 chr11 144496572 144496625 -6286928 + (CCCTG)n Simple_repeat Simple_repeat 2 56 0 398 203 61 6 chr11 144497680 144497843 -6285710 + (CA)n Simple_repeat Simple_repeat 1 172 0 225 0 0 0 chr11 144497981 144498006 -6285547 + (CA)n Simple_repeat Simple_repeat 1 25 0 1878 164 44 0 chr11 144499648 144499941 -6283612 + AluSx SINE Alu 1 306 -6 530 241 31 25 chr11 144499958 144500120 -6283433 + MIR SINE MIR 46 208 -54 2042 164 0 0 chr11 144500419 144500729 -6282824 - AluSx SINE Alu 0 312 3 33 0 0 0 chr11 144500781 144500814 -6282739 + AT_rich Low_complexity Low_complexity 1 33 0 259 143 18 54 chr11 144501531 144501587 -6281966 + MIR SINE MIR 110 163 -99 351 231 97 37 chr11 144503422 144503556 -6279997 - MIR3 SINE MIR -12 196 55 1492 295 67 51 chr11 144503904 144504972 -6278581 + L1MEd LINE L1 152 1236 -4883 325 305 61 30 chr11 144506018 144506182 -6277371 + MIR SINE MIR 39 207 -55 215 154 26 0 chr11 144507074 144507113 -6276440 + CT-rich Low_complexity Low_complexity 3 42 0 423 183 126 114 chr11 144507955 144508130 -6275423 - MER69A DNA AcHobo 0 177 1 492 247 38 38 chr11 144508206 144508392 -6275161 - MER5A DNA MER1_type 0 189 4 1581 188 29 16 chr11 144508395 144508703 -6274850 + AluJb SINE Alu 1 312 0 190 306 111 42 chr11 144508731 144508875 -6274678 - MIR3 SINE MIR -52 156 3 532 95 0 32 chr11 144509880 144509975 -6273578 + (GGGA)n Simple_repeat Simple_repeat 4 95 0 232 313 0 12 chr11 144511085 144511165 -6272388 - L2 LINE L2 -9 3263 3185 2296 125 0 0 chr11 144511221 144511525 -6272028 - AluSg SINE Alu -6 304 1 252 293 13 0 chr11 144511533 144511608 -6271945 + MIR SINE MIR 50 125 -83 1512 152 3 76 chr11 144511753 144511853 -6271700 + AluJo SINE Alu 18 124 -188 2283 94 18 0 chr11 144511853 144512139 -6271414 + AluSx SINE Alu 3 293 -19 1512 152 3 76 chr11 144512139 144512167 -6271386 + AluJo SINE Alu 124 152 -160 2378 95 0 0 chr11 144512167 144512461 -6271092 + AluY SINE Alu 1 294 -17 1512 152 3 76 chr11 144512461 144512477 -6271076 + AluJo SINE Alu 152 168 -144 516 32 0 0 chr11 144512477 144512539 -6271014 + (TA)n Simple_repeat Simple_repeat 2 63 0 1512 152 3 76 chr11 144512539 144512682 -6270871 + AluJo SINE Alu 168 286 -26 4021 46 37 7 chr11 144513240 144513779 -6269774 + L1PA8 LINE L1 5618 6172 0 333 317 15 35 chr11 144513899 144514098 -6269455 + MER117 DNA MER1_type 3 197 0 2517 84 0 3 chr11 144514326 144514636 -6268917 - AluY SINE Alu -2 309 1 2003 142 0 19 chr11 144514835 144515153 -6268400 - AluJb SINE Alu 0 312 1 278 304 32 32 chr11 144518132 144518257 -6265296 - MIR SINE MIR -64 144 20 252 340 136 0 chr11 144519989 144520151 -6263402 - MIR SINE MIR 0 262 79 755 267 94 52 chr11 144520352 144520525 -6263028 - MARNA DNA Mariner -42 544 380 2356 94 7 0 chr11 144520525 144520823 -6262730 + AluSp SINE Alu 1 300 -13 755 267 94 52 chr11 144520823 144520979 -6262574 - MARNA DNA Mariner -206 380 201 189 0 0 0 chr11 144521895 144521916 -6261637 + (A)n Simple_repeat Simple_repeat 1 21 0 1909 152 19 32 chr11 144521994 144522309 -6261244 + AluSx SINE Alu 1 311 -1 489 302 69 6 chr11 144523420 144523579 -6259974 - MIR3 SINE MIR -2 206 38 377 290 71 35 chr11 144523772 144523941 -6259612 + MIR SINE MIR 12 186 -76 2266 232 51 21 chr11 144525129 144525702 -6257851 - MLT1E LTR MaLR 0 593 4 222 271 17 0 chr11 144525747 144525806 -6257747 + (TAA)n Simple_repeat Simple_repeat 2 61 0 201 39 0 0 chr11 144525848 144525874 -6257679 + (TA)n Simple_repeat Simple_repeat 2 27 0 183 80 0 0 chr11 144525898 144525923 -6257630 + (CA)n Simple_repeat Simple_repeat 1 25 0 375 88 0 0 chr11 144525951 144526008 -6257545 - AluSq SINE Alu -3 298 242 1611 106 0 5 chr11 144526008 144526215 -6257338 - AluSq SINE Alu -107 206 1 213 185 56 19 chr11 144526229 144526283 -6257270 - MIR SINE MIR -98 164 109 309 259 110 39 chr11 144527062 144527223 -6256330 - MIR SINE MIR -60 202 22 2342 97 0 10 chr11 144527505 144527814 -6255739 - AluSx SINE Alu 0 312 7 523 295 97 21 chr11 144528406 144528643 -6254910 - MIR SINE MIR -4 258 4 262 320 40 0 chr11 144529291 144529391 -6254162 - MIR SINE MIR -56 206 103 2620 107 0 0 chr11 144529750 144530113 -6253440 + THE1B LTR MaLR 2 364 0 552 325 72 0 chr11 144530190 144530405 -6253148 - MIR SINE MIR -6 256 28 2426 99 0 0 chr11 144530636 144530938 -6252615 - AluSx SINE Alu -10 302 1 1999 63 0 0 chr11 144531051 144531290 -6252263 - AluY SINE Alu 0 311 73 720 279 40 5 chr11 144531433 144531634 -6251919 + MIR3 SINE MIR 1 208 0 2294 173 12 2 chr11 144531715 144532143 -6251410 - L1MA8 LINE L1 -10 6281 5850 210 71 0 0 chr11 144533090 144533118 -6250435 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 238 325 146 33 chr11 144533278 144533429 -6250124 - MIR3 SINE MIR -4 204 37 183 275 121 55 chr11 144533752 144533843 -6249710 - MER5A DNA MER1_type -73 116 20 514 298 120 67 chr11 144534677 144534976 -6248577 + L2 LINE L2 1563 1845 -1469 2351 113 3 0 chr11 144534976 144535285 -6248268 + AluSx SINE Alu 1 310 -2 514 298 120 67 chr11 144535285 144535662 -6247891 + L2 LINE L2 1845 2275 -1039 249 33 0 0 chr11 144586042 144586072 -6197481 + (A)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr11 144586789 144586811 -6196742 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr11 144587148 144587184 -6196369 + AT_rich Low_complexity Low_complexity 1 36 0 321 26 0 0 chr11 144587311 144587349 -6196204 + (TG)n Simple_repeat Simple_repeat 2 39 0 395 301 130 0 chr11 144588053 144588199 -6195354 + MIR SINE MIR 49 213 -49 369 0 0 0 chr11 144588693 144588734 -6194819 + (TG)n Simple_repeat Simple_repeat 2 42 0 231 191 0 103 chr11 144592856 144592924 -6190629 + L2 LINE L2 3249 3309 -4 182 282 26 77 chr11 144593654 144593732 -6189821 - L2 LINE L2 -39 3274 3201 598 380 60 27 chr11 144593909 144594391 -6189162 - L2 LINE L2 -352 2962 2465 188 293 107 0 chr11 144594393 144594468 -6189085 - L2 LINE L2 -5 3267 3185 341 268 87 29 chr11 144594498 144594636 -6188917 - MIR SINE MIR -8 254 109 227 317 67 10 chr11 144594688 144594792 -6188761 - L2 LINE L2 -831 2483 2374 2197 109 7 0 chr11 144595041 144595343 -6188210 - AluSx SINE Alu -8 304 1 415 228 147 43 chr11 144596067 144596251 -6187302 - L3 LINE CR1 -1 1576 1374 2161 97 3 13 chr11 144596251 144596551 -6187002 + AluSg SINE Alu 1 297 -13 1874 137 0 0 chr11 144596564 144596849 -6186704 + AluSx SINE Alu 6 290 -22 216 219 0 0 chr11 144596852 144596893 -6186660 + (TA)n Simple_repeat Simple_repeat 2 42 0 367 335 52 13 chr11 144596918 144597073 -6186480 + L3 LINE CR1 1148 1308 -269 331 243 191 29 chr11 144597084 144597257 -6186296 - MIR3 SINE MIR -6 202 2 221 254 0 73 chr11 144598140 144598250 -6185303 + G-rich Low_complexity Low_complexity 3 104 0 304 254 91 9 chr11 144598876 144598986 -6184567 - MIR3 SINE MIR -83 125 7 380 282 159 12 chr11 144599054 144599224 -6184329 + MIR SINE MIR 39 233 -29 2230 96 0 0 chr11 144599281 144599572 -6183981 - AluSx SINE Alu -18 294 4 201 340 58 0 chr11 144600239 144600342 -6183211 + MIR3 SINE MIR 84 192 -16 351 279 28 28 chr11 144603509 144603688 -6179865 + (CA)n Simple_repeat Simple_repeat 1 179 0 360 256 45 23 chr11 144603768 144604001 -6179552 + (CA)n Simple_repeat Simple_repeat 1 238 0 344 259 59 6 chr11 144604075 144604245 -6179308 + (CA)n Simple_repeat Simple_repeat 1 179 0 412 266 25 13 chr11 144604265 144604423 -6179130 + (CA)n Simple_repeat Simple_repeat 2 161 0 809 207 124 0 chr11 144604778 144604971 -6178582 - MER20 DNA MER1_type -2 217 1 1652 125 12 8 chr11 144605499 144605747 -6177806 + AluSx SINE Alu 58 306 -6 854 119 0 0 chr11 144605766 144605884 -6177669 - FLAM_C SINE Alu -10 133 16 2032 133 3 16 chr11 144605928 144606244 -6177309 + AluSx SINE Alu 1 312 0 269 286 36 0 chr11 144607031 144607115 -6176438 - L2 LINE L2 0 3272 3186 1936 117 47 13 chr11 144608384 144608684 -6174869 + AluSg SINE Alu 1 310 0 410 65 16 0 chr11 144608688 144608750 -6174803 + (CA)n Simple_repeat Simple_repeat 2 64 0 24 0 0 0 chr11 144610581 144610605 -6172948 + AT_rich Low_complexity Low_complexity 1 24 0 1651 105 150 15 chr11 144610745 144611011 -6172542 + AluSx SINE Alu 1 302 0 354 335 18 18 chr11 144611959 144612123 -6171430 + MIR SINE MIR 5 168 -94 2271 103 3 0 chr11 144612261 144612563 -6170990 + AluSp SINE Alu 1 303 -10 1315 244 24 24 chr11 144612785 144612805 -6170748 - MSTD-int LTR MaLR -1179 556 537 2205 120 0 7 chr11 144612805 144613114 -6170439 - AluSx SINE Alu -5 307 1 1315 244 24 24 chr11 144613114 144613475 -6170078 - MSTD-int LTR MaLR -1197 538 175 190 214 14 14 chr11 144613490 144613560 -6169993 + CT-rich Low_complexity Low_complexity 1 70 0 2039 157 112 3 chr11 144613606 144613963 -6169590 - MSTD LTR MaLR 0 396 1 823 333 102 65 chr11 144614037 144614802 -6168751 - L2 LINE L2 -456 2858 2022 1939 120 41 0 chr11 144614802 144615093 -6168460 + AluSx SINE Alu 10 312 0 823 333 102 65 chr11 144615093 144615645 -6167908 - L2 LINE L2 -1292 2022 1492 2012 140 13 0 chr11 144615682 144615990 -6167563 + AluSx SINE Alu 1 312 0 545 229 21 96 chr11 144616954 144617142 -6166411 + MER5B DNA MER1_type 2 175 -3 512 249 45 73 chr11 144617439 144617616 -6165937 + MER5B DNA MER1_type 1 172 -6 258 324 221 0 chr11 144617629 144617765 -6165788 - MER5A DNA MER1_type 0 189 24 493 294 56 11 chr11 144617865 144618045 -6165508 - L2 LINE L2 -4 3309 3122 190 311 48 29 chr11 144618529 144618632 -6164921 + MER5B DNA MER1_type 25 129 -49 1744 182 0 13 chr11 144623411 144623713 -6159840 - AluJo SINE Alu -14 298 1 278 370 100 17 chr11 144623879 144624109 -6159444 + MIR SINE MIR 4 252 -10 1968 118 31 3 chr11 144624656 144624944 -6158609 - AluSx SINE Alu -16 296 1 1538 239 102 29 chr11 144624944 144625537 -6158016 - MLT1E2 LTR MaLR 0 626 7 871 88 0 0 chr11 144626078 144626191 -6157362 + AluJb SINE Alu 13 125 -187 511 241 5 113 chr11 144626299 144626494 -6157059 + MIR SINE MIR 89 262 0 248 200 0 0 chr11 144626547 144626592 -6156961 - MER3 DNA MER1_type 0 209 165 940 193 0 28 chr11 144626602 144626778 -6156775 - FAM SINE Alu -4 171 1 720 157 76 35 chr11 144626778 144626950 -6156603 - MER3 DNA MER1_type -30 179 1 256 245 10 61 chr11 144629848 144629946 -6153607 + MIR3 SINE MIR 15 107 -101 397 290 24 35 chr11 144630763 144630932 -6152621 - MIR SINE MIR -19 243 77 2323 71 14 0 chr11 144630932 144631229 -6152324 - AluY SINE Alu -10 301 1 336 318 101 11 chr11 144631282 144631461 -6152092 + MIR SINE MIR 5 199 -63 277 327 165 20 chr11 144631494 144631511 -6152042 + L2 LINE L2 2688 2701 -613 902 130 0 0 chr11 144631511 144631634 -6151919 + FLAM_C SINE Alu 5 127 -6 277 327 165 20 chr11 144631634 144631864 -6151689 + L2 LINE L2 2701 2971 -343 411 286 53 58 chr11 144632626 144632815 -6150738 - MER91A DNA MER1_type -8 188 1 1499 201 14 0 chr11 144633173 144633467 -6150086 + AluJb SINE Alu 1 298 -14 240 321 12 0 chr11 144633696 144633780 -6149773 - L1MC/D LINE L1 -1938 5870 5786 2064 141 0 3 chr11 144634096 144634409 -6149144 - AluSx SINE Alu 0 312 1 189 74 0 0 chr11 144634431 144634458 -6149095 + (T)n Simple_repeat Simple_repeat 1 27 0 2370 96 0 0 chr11 144635468 144635781 -6147772 - AluSq SINE Alu 0 313 1 1861 125 26 26 chr11 144637045 144637358 -6146195 + AluSq SINE Alu 1 313 0 189 0 0 0 chr11 144637590 144637611 -6145942 + (A)n Simple_repeat Simple_repeat 1 21 0 450 134 52 0 chr11 144637680 144637777 -6145776 + CT-rich Low_complexity Low_complexity 1 102 0 725 195 16 0 chr11 144637779 144637907 -6145646 - FLAM_A SINE Alu 0 133 4 2155 94 13 7 chr11 144639445 144639752 -6143801 + AluSc SINE Alu 1 309 0 255 103 0 0 chr11 144639938 144639977 -6143576 + (A)n Simple_repeat Simple_repeat 1 39 0 192 276 230 66 chr11 144640041 144640134 -6143419 + MIR SINE MIR 43 119 -143 940 233 161 42 chr11 144640134 144640464 -6143089 + MLT1A2 LTR MaLR 5 373 -1 192 276 230 66 chr11 144640464 144640522 -6143031 + MIR SINE MIR 119 219 -43 420 289 0 0 chr11 144641808 144641988 -6141565 + (TG)n Simple_repeat Simple_repeat 1 180 0 615 224 0 0 chr11 144642022 144642201 -6141352 + (TG)n Simple_repeat Simple_repeat 2 180 0 257 136 0 0 chr11 144642217 144642261 -6141292 + MER21A-int LTR ERV1 1111 1154 -5444 358 251 12 0 chr11 144642303 144642466 -6141087 + (TG)n Simple_repeat Simple_repeat 1 165 0 537 271 0 0 chr11 144642480 144642902 -6140651 + (TG)n Simple_repeat Simple_repeat 1 422 0 575 226 0 11 chr11 144642919 144643100 -6140453 + (TG)n Simple_repeat Simple_repeat 2 180 0 222 208 0 0 chr11 144643115 144643168 -6140385 + (TG)n Simple_repeat Simple_repeat 2 54 0 569 228 0 22 chr11 144643187 144643371 -6140182 + (TG)n Simple_repeat Simple_repeat 1 180 0 234 0 0 0 chr11 144644798 144644824 -6138729 + (A)n Simple_repeat Simple_repeat 1 26 0 3512 173 19 42 chr11 144644824 144645435 -6138118 + MER21A-int LTR ERV1 3470 4063 -128 2252 82 17 0 chr11 144645435 144645728 -6137825 + AluSx SINE Alu 1 298 -14 3512 173 19 42 chr11 144645728 144645855 -6137698 + MER21A-int LTR ERV1 4063 4191 0 2589 150 91 16 chr11 144645909 144646638 -6136915 + MER21A LTR ERV1 23 928 -3 2066 92 0 27 chr11 144646705 144646999 -6136554 - AluSq SINE Alu -10 303 18 228 271 34 0 chr11 144647093 144647152 -6136401 - L3 LINE CR1 -6 1571 1511 327 247 201 32 chr11 144647191 144647345 -6136208 - L2 LINE L2 -2 3270 3091 225 278 0 0 chr11 144647471 144647525 -6136028 - L3 LINE CR1 -108 1469 1416 931 327 65 10 chr11 144648676 144649077 -6134476 - LTR16C LTR ERVL 0 491 69 334 340 47 7 chr11 144649361 144649511 -6134042 - MIR SINE MIR -72 190 35 373 352 19 0 chr11 144649982 144650141 -6133412 + MER103 DNA DNA 4 165 -1 223 167 0 21 chr11 144650200 144650248 -6133305 + MIR SINE MIR 53 99 -109 195 331 50 65 chr11 144650421 144650560 -6132993 + MIR SINE MIR 53 145 -63 370 282 84 8 chr11 144651010 144651141 -6132412 + MIR3 SINE MIR 33 173 -35 233 231 0 0 chr11 144651203 144651255 -6132298 - L2 LINE L2 0 3313 3262 599 290 24 27 chr11 144651265 144651482 -6132071 - MIR SINE MIR -15 247 34 338 0 24 0 chr11 144651728 144651770 -6131783 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 796 97 18 0 chr11 144651778 144651891 -6131662 - FLAM_C SINE Alu -27 116 2 364 264 179 21 chr11 144653858 144653998 -6129555 + MIR SINE MIR 20 181 -81 526 291 28 11 chr11 144655632 144655814 -6127739 + MER5A DNA MER1_type 1 185 -4 290 210 74 25 chr11 144656051 144656132 -6127421 - MIR SINE MIR -120 142 58 243 368 0 0 chr11 144656473 144656560 -6126993 - MIR SINE MIR -78 130 44 187 356 14 0 chr11 144657518 144657591 -6125962 + MIR SINE MIR 186 259 -3 312 321 236 12 chr11 144657591 144658070 -6125483 + L2 LINE L2 2254 2839 -475 470 293 92 11 chr11 144658159 144658333 -6125220 - MIR SINE MIR -37 225 38 514 276 100 0 chr11 144659601 144659771 -6123782 - MIR SINE MIR -56 206 20 1893 144 20 7 chr11 144660434 144660732 -6122821 + AluSx SINE Alu 1 302 -10 237 33 0 0 chr11 144661090 144661120 -6122433 + (CA)n Simple_repeat Simple_repeat 2 31 0 759 105 0 0 chr11 144661252 144661357 -6122196 - AluSg/x SINE Alu -19 293 189 2146 102 0 0 chr11 144661379 144661672 -6121881 - AluSx SINE Alu -19 293 1 231 125 0 0 chr11 144661764 144661804 -6121749 + (CA)n Simple_repeat Simple_repeat 2 41 0 403 274 258 5 chr11 144663502 144663692 -6119861 - MIR SINE MIR -19 243 6 304 259 236 23 chr11 144664088 144664262 -6119291 + MIR SINE MIR 31 241 -21 879 149 0 0 chr11 144664272 144664406 -6119147 + AluJo SINE Alu 1 134 -178 33 85 0 0 chr11 144664436 144664518 -6119035 + AT_rich Low_complexity Low_complexity 1 82 0 2083 113 0 0 chr11 144664700 144665022 -6118531 + AluSq SINE Alu 1 322 0 270 307 117 22 chr11 144665106 144665243 -6118310 + MIR SINE MIR 6 155 -107 211 231 0 19 chr11 144665623 144665675 -6117878 + L2 LINE L2 3262 3312 -1 2106 106 13 0 chr11 144666247 144666549 -6117004 + AluSg SINE Alu 1 306 -4 196 282 107 10 chr11 144666757 144666860 -6116693 + L2 LINE L2 3155 3267 -5 2059 128 3 0 chr11 144666987 144667283 -6116270 + AluSx SINE Alu 1 297 -15 588 106 0 0 chr11 144667751 144667836 -6115717 - AluSg/x SINE Alu -11 299 215 208 168 42 25 chr11 144668538 144668657 -6114896 + CT-rich Low_complexity Low_complexity 4 124 0 411 240 20 4 chr11 144669227 144669354 -6114199 + MIR SINE MIR 20 146 -62 329 269 39 58 chr11 144669547 144669703 -6113850 + MIR SINE MIR 1 153 -109 525 189 21 56 chr11 144669795 144669938 -6113615 + MIR SINE MIR 104 241 -21 704 254 68 68 chr11 144673071 144673319 -6110234 - MIR SINE MIR -6 256 9 855 267 82 23 chr11 144674070 144674373 -6109180 - L3 LINE CR1 -24 1553 1233 188 100 25 0 chr11 144675121 144675161 -6108392 + (TC)n Simple_repeat Simple_repeat 2 42 0 1808 164 3 0 chr11 144675332 144675618 -6107935 + AluJo SINE Alu 1 287 -25 495 0 0 0 chr11 144675644 144675699 -6107854 + (CA)n Simple_repeat Simple_repeat 2 56 0 258 308 47 23 chr11 144677928 144678059 -6105494 - MIR3 SINE MIR -67 141 11 384 263 35 35 chr11 144679495 144679609 -6103944 + MIR3 SINE MIR 57 170 -38 236 204 22 66 chr11 144679961 144680062 -6103491 + MIR SINE MIR 14 107 -102 228 254 28 14 chr11 144680125 144680196 -6103357 + MIR SINE MIR 117 188 -74 459 35 0 0 chr11 144680198 144680255 -6103298 + (TC)n Simple_repeat Simple_repeat 1 57 0 1767 118 90 0 chr11 144680282 144680561 -6102992 - AluSx SINE Alu -5 307 4 576 269 4 96 chr11 144680757 144681017 -6102536 - L2 LINE L2 -4 3309 3074 187 365 37 0 chr11 144681389 144681496 -6102057 - MIR SINE MIR -76 132 22 438 251 115 109 chr11 144681735 144681915 -6101638 + L2 LINE L2 2924 3108 -164 1726 131 0 88 chr11 144681915 144682235 -6101318 - AluJb SINE Alu -20 292 1 438 251 115 109 chr11 144682235 144682385 -6101168 + L2 LINE L2 3108 3256 -16 534 16 0 0 chr11 144682498 144682561 -6100992 + (TTGTG)n Simple_repeat Simple_repeat 3 65 0 871 258 9 26 chr11 144682566 144682799 -6100754 + MIR SINE MIR 9 237 -25 197 333 11 23 chr11 144684362 144684449 -6099104 + MIR SINE MIR 35 120 -88 1166 122 0 0 chr11 144686033 144686197 -6097356 - AluSx SINE Alu -12 298 135 261 0 0 0 chr11 144686298 144686327 -6097226 + (CA)n Simple_repeat Simple_repeat 2 30 0 182 345 172 0 chr11 144686659 144686775 -6096778 + L3 LINE CR1 1195 1330 -247 577 192 24 32 chr11 144686778 144686903 -6096650 + FLAM_C SINE Alu 1 124 -19 450 0 0 0 chr11 144686903 144686953 -6096600 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 282 191 0 0 chr11 144687009 144687056 -6096497 + L3 LINE CR1 1426 1472 -105 2150 91 32 19 chr11 144687353 144687661 -6095892 - AluSx SINE Alu 0 312 1 827 76 0 76 chr11 144687662 144687819 -6095734 - AluSx SINE Alu -168 145 1 468 301 77 6 chr11 144687841 144687997 -6095556 - MIR SINE MIR -50 212 46 427 291 71 0 chr11 144689729 144689870 -6093683 + MER5B DNA MER1_type 1 151 -27 3950 229 35 88 chr11 144690323 144691643 -6091910 + MSTD-int LTR MaLR 486 1735 0 2077 175 44 23 chr11 144691643 144692031 -6091522 + MSTD LTR MaLR 1 396 0 712 210 34 17 chr11 144692535 144692711 -6090842 - MER20 DNA MER1_type 0 219 41 475 320 76 0 chr11 144692722 144692894 -6090659 - MIR SINE MIR -32 230 46 200 330 171 0 chr11 144693179 144693267 -6090286 - L3 LINE CR1 -541 1036 934 185 339 126 43 chr11 144693368 144693598 -6089955 - L3 LINE CR1 -804 773 525 333 351 59 27 chr11 144693629 144693767 -6089786 + L2 LINE L2 2725 2857 -456 2002 154 45 28 chr11 144693767 144694125 -6089428 - THE1B LTR MaLR 0 364 1 333 351 59 27 chr11 144694125 144694330 -6089223 + L2 LINE L2 2857 3086 -227 386 272 0 19 chr11 144694335 144694438 -6089115 + L2 LINE L2 3213 3313 0 1827 160 27 0 chr11 144694916 144695216 -6088337 + AluJb SINE Alu 1 308 -4 905 163 53 93 chr11 144695605 144695905 -6087648 + MER33 DNA MER1_type 37 324 0 187 289 0 0 chr11 144695905 144695950 -6087603 + MIR3 SINE MIR 153 197 -11 246 348 61 55 chr11 144695958 144696122 -6087431 + MER5B DNA MER1_type 1 165 -13 1036 117 117 17 chr11 144696505 144696684 -6086869 + AluJo SINE Alu 108 304 -8 285 371 86 0 chr11 144696907 144697023 -6086530 + L2 LINE L2 3146 3271 -1 246 261 223 19 chr11 144697496 144697653 -6085900 + MIR SINE MIR 13 201 -61 426 39 0 0 chr11 144697653 144697705 -6085848 + (CA)n Simple_repeat Simple_repeat 2 53 0 2924 176 18 32 chr11 144698412 144698979 -6084574 + L1MB3 LINE L1 5616 6174 -9 270 330 111 20 chr11 144698997 144699446 -6084107 + L1ME LINE L1 5296 5875 -295 2234 69 0 39 chr11 144699447 144699753 -6083800 - AluY SINE Alu -17 294 1 1572 154 0 74 chr11 144699774 144700086 -6083467 + AluJo SINE Alu 17 305 -7 335 326 81 66 chr11 144700290 144700563 -6082990 + L1MDa LINE L1 2219 2495 -4045 2277 83 0 19 chr11 144700571 144700883 -6082670 + AluSq SINE Alu 5 310 -3 252 0 0 0 chr11 144700964 144700992 -6082561 + (A)n Simple_repeat Simple_repeat 1 28 0 377 260 0 0 chr11 144702262 144702362 -6081191 - L1MC4 LINE L1 -15 8027 7928 532 392 42 11 chr11 144703003 144703263 -6080290 - L3b LINE CR1 -10 1573 1306 242 343 59 0 chr11 144703587 144703689 -6079864 - L2 LINE L2 -6 3266 3159 1616 51 4 60 chr11 144703732 144703967 -6079586 + AluY SINE Alu 1 222 -89 210 91 0 0 chr11 144704312 144704345 -6079208 + (T)n Simple_repeat Simple_repeat 1 33 0 900 181 0 0 chr11 144705473 144705712 -6077841 + (TG)n Simple_repeat Simple_repeat 1 239 0 334 229 43 0 chr11 144705719 144705789 -6077764 + L1MCa LINE L1 1996 2068 -4358 201 74 0 0 chr11 144705789 144705816 -6077737 + (TG)n Simple_repeat Simple_repeat 2 28 0 401 297 0 12 chr11 144705816 144705981 -6077572 + GA-rich Low_complexity Low_complexity 2 164 0 248 241 0 0 chr11 144708380 144708434 -6075119 + GA-rich Low_complexity Low_complexity 1 54 0 674 274 103 5 chr11 144708593 144708816 -6074737 - MIR SINE MIR -16 246 2 459 237 72 48 chr11 144710506 144710669 -6072884 + MIR SINE MIR 10 185 -77 2044 143 0 3 chr11 144710669 144710970 -6072583 + AluSx SINE Alu 1 300 -12 459 237 72 48 chr11 144710970 144710993 -6072560 + MIR SINE MIR 185 206 -56 193 250 52 42 chr11 144712142 144712238 -6071315 - MIR SINE MIR -42 220 124 554 149 78 125 chr11 144712319 144712513 -6071040 + MLT1C LTR MaLR 5 170 -297 1502 172 0 80 chr11 144712513 144712851 -6070702 + AluJo SINE Alu 2 312 0 554 149 78 125 chr11 144712851 144712864 -6070689 + MLT1C LTR MaLR 170 182 -285 216 204 23 0 chr11 144712865 144712909 -6070644 + GA-rich Low_complexity Low_complexity 5 49 0 938 220 156 1 chr11 144712909 144713176 -6070377 + MLT1C LTR MaLR 178 463 -4 22 0 0 0 chr11 144715920 144715942 -6067611 + AT_rich Low_complexity Low_complexity 1 22 0 346 296 87 8 chr11 144717002 144717159 -6066394 - MIR SINE MIR 0 262 100 529 286 198 5 chr11 144717316 144717508 -6066045 - MIR SINE MIR -9 253 25 210 184 0 0 chr11 144718009 144718047 -6065506 - MIR SINE MIR -86 122 85 370 196 215 0 chr11 144718177 144718284 -6065269 - MIR3 SINE MIR -44 164 35 330 341 71 16 chr11 144719037 144719219 -6064334 + MIR3 SINE MIR 7 198 -10 1793 181 132 79 chr11 144719277 144719367 -6064186 - MER74A LTR ERVL 0 558 474 2104 91 0 40 chr11 144719367 144719722 -6063831 + AluSp SINE Alu 1 343 0 1793 181 132 79 chr11 144719722 144720159 -6063394 - MER74A LTR ERVL -84 474 2 396 294 85 0 chr11 144720196 144720349 -6063204 - MER91A DNA MER1_type -30 166 1 630 131 25 121 chr11 144720353 144720528 -6063025 + MER53 DNA DNA 3 158 -31 1942 169 46 9 chr11 144720528 144720876 -6062677 - MLT1A1 LTR MaLR 0 365 5 630 131 25 121 chr11 144720876 144720899 -6062654 + MER53 DNA DNA 158 182 -7 261 0 0 0 chr11 144720995 144721024 -6062529 + (GA)n Simple_repeat Simple_repeat 1 29 0 218 292 11 11 chr11 144721084 144721173 -6062380 + GA-rich Low_complexity Low_complexity 1 89 0 246 301 139 22 chr11 144722513 144722825 -6060728 + L2 LINE L2 2713 3059 -213 226 250 241 35 chr11 144722846 144722962 -6060591 + L2 LINE L2 3170 3309 -4 330 167 0 0 chr11 144723059 144723119 -6060434 + (TG)n Simple_repeat Simple_repeat 1 60 0 336 302 0 9 chr11 144723119 144723236 -6060317 + L1MC4 LINE L1 1995 6983 -1339 317 360 0 0 chr11 144723249 144723338 -6060215 + L1MC4 LINE L1 6615 6703 -1339 425 263 188 0 chr11 144724016 144724149 -6059404 + MER5A DNA MER1_type 32 189 0 278 323 0 103 chr11 144724330 144724485 -6059068 + L2 LINE L2 2916 3054 -259 352 345 96 10 chr11 144724691 144724888 -6058665 + MIR SINE MIR 48 261 -1 548 303 42 0 chr11 144724951 144725116 -6058437 - MIR SINE MIR -70 192 21 596 228 120 38 chr11 144725573 144725757 -6057796 - L2 LINE L2 -15 3298 3100 362 344 159 46 chr11 144725765 144726521 -6057032 + L2 LINE L2 2007 2847 -467 2347 101 0 0 chr11 144726586 144726892 -6056661 - AluSq SINE Alu -7 306 1 546 322 14 29 chr11 144726916 144727124 -6056429 + MIR SINE MIR 30 234 -28 248 211 0 35 chr11 144727411 144727468 -6056085 + MLT1G1 LTR MaLR 459 513 -82 1629 244 45 18 chr11 144727560 144728006 -6055547 + MER39 LTR ERV1 250 707 0 372 349 58 51 chr11 144728411 144728686 -6054867 + L2 LINE L2 2985 3261 -11 760 254 41 0 chr11 144728902 144729099 -6054454 - MIR SINE MIR 0 262 58 376 159 377 7 chr11 144729106 144729244 -6054309 + MER53 DNA DNA 1 189 0 2104 111 3 16 chr11 144729367 144729673 -6053880 - AluSq SINE Alu -11 302 1 445 317 69 29 chr11 144729947 144730193 -6053360 + MIR SINE MIR 5 260 -2 261 367 54 15 chr11 144731198 144731328 -6052225 - MIR SINE MIR -62 146 30 383 227 113 0 chr11 144732898 144732995 -6050558 + MIR SINE MIR 85 192 -70 204 316 53 11 chr11 144733799 144733894 -6049659 + L2 LINE L2 3196 3294 -19 288 0 0 0 chr11 144734755 144734787 -6048766 + (TG)n Simple_repeat Simple_repeat 1 32 0 283 267 48 29 chr11 144735106 144735211 -6048342 + MIR SINE MIR 47 153 -109 219 273 52 0 chr11 144735691 144735768 -6047785 + MIR SINE MIR 67 147 -115 2401 99 0 10 chr11 144736243 144736556 -6046997 - AluSx SINE Alu 0 312 3 299 234 106 11 chr11 144736714 144736808 -6046745 + L3b LINE CR1 1278 1380 -203 1175 67 0 0 chr11 144737796 144737930 -6045623 + AluY SINE Alu 1 134 -177 2675 62 0 0 chr11 144737930 144738239 -6045314 + AluY SINE Alu 1 309 -2 189 0 0 0 chr11 144738408 144738429 -6045124 + (A)n Simple_repeat Simple_repeat 1 21 0 795 187 22 28 chr11 144738683 144738865 -6044688 + MER96B DNA MER1_type? 1 181 -236 879 203 5 19 chr11 144739186 144739393 -6044160 + MER96B DNA MER1_type? 191 394 -23 513 247 133 0 chr11 144740579 144740737 -6042816 + L2 LINE L2 2405 2583 -731 583 208 18 38 chr11 144740784 144740949 -6042604 + MLT1F LTR MaLR 413 537 -5 512 269 21 76 chr11 144741010 144741232 -6042321 - MIR SINE MIR -38 224 17 294 233 0 0 chr11 144741864 144742044 -6041509 + (TG)n Simple_repeat Simple_repeat 1 180 0 276 91 0 0 chr11 144742043 144742087 -6041466 + (GA)n Simple_repeat Simple_repeat 1 44 0 * 404 203 0 0 chr11 144742781 144742855 -6040698 - MIR SINE MIR -116 146 73 1933 123 49 0 chr11 144743637 144743921 -6039632 + AluSx SINE Alu 1 298 -14 323 285 49 35 chr11 144744638 144744782 -6038771 + L2 LINE L2 3168 3313 0 522 130 10 40 chr11 144744975 144745075 -6038478 + MER3 DNA MER1_type 94 190 -19 2342 118 0 3 chr11 144745211 144745524 -6038029 + AluSx SINE Alu 1 312 0 261 313 0 0 chr11 144746286 144746350 -6037203 - MIR SINE MIR -179 83 20 270 324 106 34 chr11 144746680 144746859 -6036694 - Charlie8 DNA MER1_type -2169 248 57 294 320 90 0 chr11 144748240 144748340 -6035213 + MIR SINE MIR 42 150 -58 499 193 26 104 chr11 144748344 144748536 -6035017 + MLT1A1 LTR MaLR 1 177 -188 441 214 0 0 chr11 144748537 144748640 -6034913 + CT-rich Low_complexity Low_complexity 1 103 0 498 158 53 35 chr11 144748643 144748757 -6034796 + MLT1A1 LTR MaLR 259 374 0 656 280 16 18 chr11 144748897 144749154 -6034399 + L2 LINE L2 2437 2755 -559 1981 205 64 77 chr11 144749242 144750042 -6033511 + L1MD3 LINE L1 3449 4258 -1906 2246 112 0 14 chr11 144750042 144750338 -6033215 + AluSq SINE Alu 1 292 -21 1981 205 64 77 chr11 144750338 144751546 -6032007 + L1MD3 LINE L1 4258 5328 -836 908 173 0 0 chr11 144751546 144751679 -6031874 - AluSq/x SINE Alu -179 133 1 1934 208 60 2 chr11 144751679 144752126 -6031427 + L1MB7 LINE L1 5703 6175 -9 1981 205 64 77 chr11 144751679 144752056 -6031497 + L1MD3 LINE L1 5328 5708 -456 592 280 70 52 chr11 144752144 144752430 -6031123 + L2 LINE L2 3023 3313 0 481 329 42 5 chr11 144753426 144753642 -6029911 + MIR SINE MIR 20 243 -19 2262 91 32 19 chr11 144754468 144754803 -6028750 + AluSx SINE Alu 1 339 0 2546 73 3 9 chr11 144755155 144755470 -6028083 - AluSq SINE Alu 0 313 1 8144 164 43 16 chr11 144755482 144757004 -6026549 - MER21-int LTR ERV1 -716 3475 1913 187 315 0 0 chr11 144757055 144757109 -6026444 + MIR SINE MIR 82 135 -73 182 266 78 0 chr11 144757214 144757278 -6026275 - L2 LINE L2 -20 3252 3184 843 273 148 22 chr11 144757324 144757730 -6025823 + LTR1B LTR ERV1 42 498 -328 257 307 0 13 chr11 144757831 144757906 -6025647 + LTR28 LTR ERV1 905 978 -42 900 252 92 61 chr11 144758075 144758352 -6025201 - L2 LINE L2 -218 3054 2787 2374 94 0 3 chr11 144758352 144758649 -6024904 - AluSx SINE Alu -16 296 1 900 252 92 61 chr11 144758649 144758951 -6024602 - L2 LINE L2 -485 2787 2470 1530 212 42 0 chr11 144758966 144759254 -6024299 + AluJo SINE Alu 1 300 -12 231 284 42 32 chr11 144760058 144760153 -6023400 - MIR3 SINE MIR -32 176 81 252 275 127 14 chr11 144761094 144761236 -6022317 + MIR3 SINE MIR 33 190 -18 305 299 7 0 chr11 144761418 144761562 -6021991 + (TG)n Simple_repeat Simple_repeat 2 146 0 336 277 77 69 chr11 144761960 144762234 -6021319 - L2 LINE L2 -24 3289 3014 237 206 7 192 chr11 144762243 144762284 -6021269 + L2 LINE L2 3154 3201 -71 2107 114 0 42 chr11 144762284 144762590 -6020963 - AluSx SINE Alu -19 293 1 237 206 7 192 chr11 144762590 144762694 -6020859 + L2 LINE L2 3201 3272 0 192 77 0 0 chr11 144762880 144762906 -6020647 + (CA)n Simple_repeat Simple_repeat 2 27 0 519 256 130 40 chr11 144765636 144765859 -6017694 - MIR SINE MIR -5 257 15 211 307 20 59 chr11 144766480 144766581 -6016972 - MIR SINE MIR -78 184 88 359 289 41 8 chr11 144768953 144769074 -6014479 + L2 LINE L2 3147 3271 -1 251 291 36 91 chr11 144769432 144769597 -6013956 - MIR3 SINE MIR -39 169 37 1483 175 51 87 chr11 144769724 144770113 -6013440 + MLT1B LTR MaLR 16 390 0 446 355 96 7 chr11 144770688 144770981 -6012572 - L2 LINE L2 -414 2900 2582 417 274 89 50 chr11 144771231 144771410 -6012143 + MIR SINE MIR 64 249 -13 205 352 0 0 chr11 144771449 144771520 -6012033 - MIR SINE MIR -67 141 71 266 338 41 35 chr11 144773527 144773672 -6009881 - MIR SINE MIR -53 209 64 698 293 5 0 chr11 144774108 144774299 -6009254 - MIR SINE MIR 0 262 71 443 282 69 9 chr11 144774973 144775115 -6008438 - MIR SINE MIR -85 123 1 184 89 22 44 chr11 144776278 144776323 -6007230 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 259 244 12 58 chr11 144776801 144776887 -6006666 - MIR SINE MIR -132 130 49 22 0 0 0 chr11 144778152 144778174 -6005379 + AT_rich Low_complexity Low_complexity 1 22 0 242 269 0 30 chr11 144778624 144778691 -6004862 + L2 LINE L2 3195 3259 -13 287 0 53 0 chr11 144778957 144778995 -6004558 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 248 319 77 11 chr11 144778997 144779088 -6004465 - L2 LINE L2 -26 3287 3191 253 271 0 0 chr11 144779143 144779202 -6004351 + MIR SINE MIR 84 142 -120 245 326 91 8 chr11 144779468 144779600 -6003953 - MIR SINE MIR -14 248 106 2155 105 0 54 chr11 144780072 144780387 -6003166 + AluSx SINE Alu 1 298 -14 753 317 80 31 chr11 144780477 144780827 -6002726 - L3 LINE CR1 -11 1566 1200 299 311 146 23 chr11 144781454 144781691 -6001862 - MIR SINE MIR -3 259 10 261 375 54 6 chr11 144782369 144782461 -6001092 + L2 LINE L2 3088 3174 -98 2491 75 0 0 chr11 144782461 144782755 -6000798 - AluY SINE Alu -17 294 1 261 375 54 6 chr11 144782755 144782830 -6000723 + L2 LINE L2 3174 3263 -9 2247 110 3 0 chr11 144783821 144784111 -5999442 - AluSx SINE Alu -21 291 1 932 160 22 39 chr11 144784135 144784366 -5999187 - L1MA8 LINE L1 0 6291 6065 349 299 82 8 chr11 144784567 144784701 -5998852 - MIR SINE MIR -99 163 20 217 338 0 0 chr11 144784744 144784815 -5998738 + MIR SINE MIR 78 148 -60 306 223 85 53 chr11 144785493 144785587 -5997966 - MIR SINE MIR -102 160 64 723 315 46 4 chr11 144786141 144786379 -5997174 + MIR SINE MIR 3 250 -12 2565 54 0 13 chr11 144787515 144787830 -5995723 - AluY SINE Alu 0 311 1 2064 121 16 26 chr11 144787832 144788145 -5995408 - AluSq SINE Alu -3 310 1 333 329 65 35 chr11 144789108 144789278 -5994275 - MIR SINE MIR -71 191 17 657 284 85 66 chr11 144789569 144790006 -5993547 - L2 LINE L2 -4 3268 2824 496 256 40 2 chr11 144790612 144790778 -5992775 + MIR SINE MIR 20 192 -63 492 250 38 57 chr11 144790800 144791012 -5992541 + MIR SINE MIR 15 222 -40 599 256 26 70 chr11 144791207 144791437 -5992116 + L2 LINE L2 3094 3313 0 258 353 29 22 chr11 144792154 144792293 -5991260 - MIR3 SINE MIR -61 147 8 666 289 89 8 chr11 144792756 144792991 -5990562 - L3 LINE CR1 -393 1184 931 2028 119 0 11 chr11 144793549 144793834 -5989719 + AluJb SINE Alu 1 282 -30 185 280 0 0 chr11 144794088 144794138 -5989415 - MIR SINE MIR -129 133 84 287 311 152 24 chr11 144794325 144794489 -5989064 - MIR SINE MIR -13 249 65 236 379 0 0 chr11 144794746 144794833 -5988720 - MIR SINE MIR -12 250 164 272 257 151 59 chr11 144794949 144795101 -5988452 - MIR SINE MIR -77 185 20 195 284 63 42 chr11 144797040 144797135 -5986418 + MIR SINE MIR 16 112 -96 366 242 49 29 chr11 144798125 144798304 -5985249 - MIR SINE MIR -48 214 33 318 300 50 0 chr11 144798840 144798920 -5984633 + L2 LINE L2 3227 3310 -3 429 210 50 0 chr11 144798975 144799075 -5984478 - MIR SINE MIR -62 146 42 431 258 87 93 chr11 144800890 144801337 -5982216 + MLT1J LTR MaLR 1 511 0 410 263 10 0 chr11 144801339 144801438 -5982115 + MIR SINE MIR 54 153 -109 1891 239 71 44 chr11 144802508 144803057 -5980496 + MLT1E LTR MaLR 27 590 -3 545 226 113 0 chr11 144805054 144805187 -5978366 - MIR SINE MIR -56 206 59 294 148 0 0 chr11 144806637 144806691 -5976862 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 220 343 81 0 chr11 144806691 144806790 -5976763 - L2 LINE L2 -1 3271 3165 325 333 111 0 chr11 144807000 144807135 -5976418 - MIR SINE MIR 0 262 113 490 296 62 6 chr11 144808625 144808804 -5974749 + MIR SINE MIR 56 244 -18 22 35 0 0 chr11 144808818 144808847 -5974706 + AT_rich Low_complexity Low_complexity 1 29 0 675 242 143 9 chr11 144808853 144809084 -5974469 + MIR SINE MIR 1 262 0 216 97 0 0 chr11 144811138 144811169 -5972384 + (TCCCC)n Simple_repeat Simple_repeat 1 31 0 465 215 168 7 chr11 144812265 144812414 -5971139 - MER5B DNA MER1_type -4 174 2 670 268 59 29 chr11 144812466 144812705 -5970848 - MIR SINE MIR 0 262 17 2005 142 0 3 chr11 144812705 144812987 -5970566 - AluSx SINE Alu -18 294 14 447 311 89 13 chr11 144813650 144813875 -5969678 + MIR SINE MIR 12 253 -9 339 248 78 31 chr11 144814689 144814818 -5968735 + L2 LINE L2 3165 3299 -14 2767 179 64 4 chr11 144815117 144815680 -5967873 - L1MB7 LINE L1 -22 6162 5566 464 305 26 13 chr11 144816871 144817022 -5966531 + MIR3 SINE MIR 9 161 -47 562 236 22 60 chr11 144817024 144817206 -5966347 + MER5B DNA MER1_type 4 178 0 621 236 35 15 chr11 144817557 144817760 -5965793 + L3 LINE CR1 1193 1399 -178 277 221 88 0 chr11 144817833 144817901 -5965652 + L2 LINE L2 3188 3261 -11 590 286 61 26 chr11 144817913 144818144 -5965409 - MIR SINE MIR -15 247 9 214 167 0 0 chr11 144818155 144818191 -5965362 + L3 LINE CR1 1446 1481 -96 294 327 30 0 chr11 144819139 144819240 -5964313 - MIR SINE MIR -50 212 109 1753 199 0 0 chr11 144819241 144819542 -5964011 - AluJo SINE Alu -11 301 1 840 283 13 9 chr11 144820228 144820458 -5963095 - MIR SINE MIR -12 250 20 1781 129 19 22 chr11 144820516 144820827 -5962726 + MSTA LTR MaLR 2 311 -117 278 156 0 0 chr11 144820847 144820892 -5962661 - MSTA LTR MaLR -297 131 87 679 125 0 67 chr11 144820949 144821022 -5962531 + MSTA LTR MaLR 317 380 -48 2154 125 0 23 chr11 144821022 144821326 -5962227 - AluSx SINE Alu -5 307 11 679 125 0 67 chr11 144821326 144821372 -5962181 + MSTA LTR MaLR 380 428 0 931 306 84 17 chr11 144821508 144822121 -5961432 - L2 LINE L2 0 3313 2657 1576 217 60 81 chr11 144822192 144822722 -5960831 + LTR26B LTR ERV1 1 519 -12 338 284 159 47 chr11 144822752 144823009 -5960544 - L3 LINE CR1 -270 1307 1022 1394 104 0 0 chr11 144825134 144825316 -5958237 + AluSq SINE Alu 126 307 -6 780 261 70 9 chr11 144825412 144825642 -5957911 - MIR SINE MIR -5 257 14 225 0 0 0 chr11 144826939 144826964 -5956589 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 220 303 37 18 chr11 144827800 144827909 -5955644 - MIR3 SINE MIR -92 116 6 308 345 26 31 chr11 144828276 144828467 -5955086 + L2 LINE L2 2906 3095 -177 2212 84 28 50 chr11 144829313 144829633 -5953920 + AluSq SINE Alu 1 313 0 210 143 0 0 chr11 144829662 144829697 -5953856 + (TG)n Simple_repeat Simple_repeat 1 35 0 181 182 0 0 chr11 144831060 144831093 -5952460 + L2 LINE L2 3271 3303 -10 209 327 133 40 chr11 144831094 144831342 -5952211 - L3b LINE CR1 -97 1486 1216 675 277 84 16 chr11 144832146 144832395 -5951158 + LTR33 LTR ERVL 4 269 -252 367 287 63 7 chr11 144832464 144832607 -5950946 + LTR33 LTR ERVL 371 521 0 324 0 0 0 chr11 144833728 144833764 -5949789 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 451 326 11 47 chr11 144833764 144833954 -5949599 - MIR SINE MIR -27 235 53 337 305 92 18 chr11 144834277 144834441 -5949112 - MIR SINE MIR -1 261 86 900 177 39 6 chr11 144834615 144834796 -5948757 - MER5A DNA MER1_type 0 189 3 180 0 0 0 chr11 144835560 144835580 -5947973 + (GA)n Simple_repeat Simple_repeat 1 20 0 532 31 0 62 chr11 144835593 144835689 -5947864 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 828 25 0 34 chr11 144836036 144836154 -5947399 + (TTCC)n Simple_repeat Simple_repeat 3 116 0 180 0 0 0 chr11 144836167 144836187 -5947366 + (TC)n Simple_repeat Simple_repeat 1 20 0 2052 122 34 10 chr11 144836311 144836607 -5946946 + AluSx SINE Alu 1 303 -9 2087 181 38 25 chr11 144836637 144836705 -5946848 + MSTB1 LTR MaLR 1 67 -365 1032 119 19 0 chr11 144836705 144836864 -5946689 + L1PA8A LINE L1 5970 6131 0 2087 181 38 25 chr11 144836864 144837255 -5946298 + MSTB1 LTR MaLR 67 430 -2 275 301 63 43 chr11 144839106 144839275 -5944278 + MIR SINE MIR 5 179 -62 489 305 96 5 chr11 144839577 144839764 -5943789 + MIR SINE MIR 59 262 0 340 319 108 34 chr11 144840265 144840494 -5943059 + MIR SINE MIR 17 247 -15 233 375 0 0 chr11 144841288 144841360 -5942193 - L2 LINE L2 0 3272 3201 220 286 207 47 chr11 144841682 144841895 -5941658 - L3b LINE CR1 -15 1568 1322 202 247 219 0 chr11 144842437 144842510 -5941043 + L2 LINE L2 3184 3272 0 194 233 17 0 chr11 144843830 144843890 -5939663 + (CA)n Simple_repeat Simple_repeat 2 62 0 1688 229 29 55 chr11 144844337 144844826 -5938727 + L2 LINE L2 2150 2625 -689 202 320 147 0 chr11 144846347 144846422 -5937131 - L2 LINE L2 -12 3260 3175 402 21 0 0 chr11 144846487 144846534 -5937019 + (TCCA)n Simple_repeat Simple_repeat 1 47 0 553 327 92 5 chr11 144846580 144846797 -5936756 + MIR SINE MIR 25 260 -2 277 313 132 31 chr11 144847140 144847588 -5935965 - L2 LINE L2 -605 2709 2217 199 336 86 43 chr11 144848868 144849008 -5934545 + L2 LINE L2 3126 3271 -1 2237 106 0 0 chr11 144849977 144850278 -5933275 - AluSx SINE Alu -11 301 1 211 219 0 0 chr11 144850828 144850869 -5932684 - L2 LINE L2 0 3272 3232 261 296 10 51 chr11 144851002 144851100 -5932453 - L2 LINE L2 -5 3308 3215 * 1695 273 71 17 chr11 144851077 144851446 -5932107 + L2 LINE L2 2493 2841 -472 1970 137 176 6 chr11 144851446 144851810 -5931743 + MSTA LTR MaLR 3 428 0 1695 273 71 17 chr11 144851810 144852213 -5931340 + L2 LINE L2 2841 3313 0 2277 130 6 3 chr11 144852409 144852763 -5930790 - THE1A LTR MaLR 0 355 1 11717 93 17 0 chr11 144852763 144854317 -5929236 - THE1A-int LTR MaLR 0 1580 1 2429 124 6 3 chr11 144854317 144854671 -5928882 - THE1A LTR MaLR 0 355 1 594 311 66 20 chr11 144855907 144856151 -5927402 - MIR SINE MIR 0 262 8 308 278 122 17 chr11 144856881 144856996 -5926557 + MIR SINE MIR 86 212 -50 30 0 0 0 chr11 144858274 144858304 -5925249 + AT_rich Low_complexity Low_complexity 1 30 0 333 244 75 89 chr11 144859654 144859817 -5923736 + MIR SINE MIR 4 163 -45 1535 209 0 13 chr11 144860256 144860572 -5922981 + AluSx SINE Alu 1 312 0 363 23 0 0 chr11 144860724 144860768 -5922785 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 267 266 73 18 chr11 144862767 144862876 -5920677 + MIR SINE MIR 148 262 0 370 321 15 8 chr11 144863221 144863352 -5920201 + MER5A DNA MER1_type 55 186 -3 781 224 18 12 chr11 144865160 144865330 -5918223 - MER5B DNA MER1_type 0 178 8 1232 184 172 30 chr11 144865864 144866240 -5917313 - MSTD LTR MaLR 0 396 1 204 40 0 0 chr11 144866389 144866414 -5917139 + (T)n Simple_repeat Simple_repeat 1 25 0 2102 82 0 0 chr11 144866669 144866948 -5916605 - AluY SINE Alu -9 302 24 648 268 71 22 chr11 144867662 144867886 -5915667 + MIR SINE MIR 14 248 -14 1710 163 12 21 chr11 144868771 144869108 -5914445 + L1MA3 LINE L1 5970 6303 -2 321 176 0 106 chr11 144870073 144870110 -5913443 + MIR3 SINE MIR 124 149 -59 1096 144 27 40 chr11 144870110 144870332 -5913221 - MER20 DNA MER1_type 0 219 1 321 176 0 106 chr11 144870332 144870379 -5913174 + MIR3 SINE MIR 149 199 -9 573 230 121 41 chr11 144870397 144870625 -5912928 + MIR SINE MIR 18 262 0 186 283 43 0 chr11 144870744 144870790 -5912763 - L2 LINE L2 -12 3301 3254 201 273 30 15 chr11 144871975 144872041 -5911512 + L2 LINE L2 2990 3056 -216 2176 97 13 0 chr11 144872155 144872454 -5911099 - AluSp SINE Alu -10 303 1 265 228 433 0 chr11 144872682 144872809 -5910744 - MER5A DNA MER1_type 0 189 8 293 329 0 0 chr11 144875158 144875234 -5908319 + MIR SINE MIR 24 99 -109 292 329 147 53 chr11 144875393 144875797 -5907756 - L2 LINE L2 -221 3051 2686 2359 71 0 3 chr11 144875797 144876105 -5907448 + AluY SINE Alu 1 307 -4 292 329 147 53 chr11 144876105 144876123 -5907430 - L2 LINE L2 -586 2686 2671 807 186 71 38 chr11 144876123 144876333 -5907220 - MER20 DNA MER1_type 0 219 3 292 329 147 53 chr11 144876333 144876927 -5906626 - L2 LINE L2 -601 2671 1929 293 268 45 9 chr11 144878307 144878419 -5905134 - L2 LINE L2 -24 3248 3133 324 318 27 0 chr11 144878507 144878617 -5904936 - MIR SINE MIR -80 182 70 298 316 79 90 chr11 144879671 144880137 -5903416 - L2 LINE L2 -2 3270 2810 1988 116 0 30 chr11 144880159 144880462 -5903091 + AluSx SINE Alu 1 294 -18 399 212 24 0 chr11 144880935 144881020 -5902533 - MIR3 SINE MIR -52 156 70 232 264 172 0 chr11 144881792 144881879 -5901674 + MIR SINE MIR 53 154 -108 268 292 0 0 chr11 144881883 144881948 -5901605 + L2 LINE L2 3247 3311 -2 221 313 78 16 chr11 144883094 144883222 -5900331 - L2 LINE L2 0 3313 3178 246 296 45 97 chr11 144883630 144883877 -5899676 - L2 LINE L2 -22 3250 3017 201 298 53 0 chr11 144883927 144883984 -5899569 - L2 LINE L2 -221 3051 2992 479 246 111 8 chr11 144883993 144884119 -5899434 - L2 LINE L2 0 3313 3175 1118 226 0 35 chr11 144884149 144884375 -5899178 - MER58A DNA MER1_type -6 218 1 391 295 70 64 chr11 144884375 144884717 -5898836 - L2 LINE L2 -157 3156 2813 402 286 94 69 chr11 144885218 144885289 -5898264 - MIR SINE MIR -22 240 172 2257 91 7 0 chr11 144885289 144885587 -5897966 - AluSp SINE Alu -13 300 1 402 286 94 69 chr11 144885587 144885748 -5897805 - MIR SINE MIR -90 172 3 451 246 25 25 chr11 144886096 144886214 -5897339 - MER94 DNA DNA -1 133 16 689 206 143 21 chr11 144886550 144886739 -5896814 - L2 LINE L2 0 3313 3102 * 2139 270 204 42 chr11 144886738 144887964 -5895589 - L2 LINE L2 -353 2961 1537 226 284 103 17 chr11 144888075 144888191 -5895362 + MIR SINE MIR 85 210 -52 346 323 81 20 chr11 144890360 144890558 -5892995 + MIR SINE MIR 47 256 -6 334 346 16 18 chr11 144890590 144890832 -5892721 + CT-rich Low_complexity Low_complexity 1 241 0 205 262 16 0 chr11 144891113 144891174 -5892379 + CT-rich Low_complexity Low_complexity 4 65 0 1026 208 80 26 chr11 144892004 144892316 -5891237 - LTR16C LTR ERVL -14 477 149 663 231 21 92 chr11 144892517 144892630 -5890923 - MER58A DNA MER1_type -2196 224 135 557 231 103 6 chr11 144892630 144892786 -5890767 + MER96 DNA MER1_type 4 174 -1 663 231 21 92 chr11 144892786 144892910 -5890643 - MER58A DNA MER1_type -2285 135 4 290 249 187 34 chr11 144892912 144893121 -5890432 + L2 LINE L2 2872 3112 -160 233 317 81 59 chr11 144893090 144893361 -5890192 + L2 LINE L2 2368 2644 -670 * 378 286 44 141 chr11 144893407 144893950 -5889603 + L2 LINE L2 2776 3266 -6 198 103 0 0 chr11 144894546 144894575 -5888978 + (CA)n Simple_repeat Simple_repeat 1 29 0 225 221 26 78 chr11 144895049 144895126 -5888427 + MER5A DNA MER1_type 33 105 -84 2108 105 0 17 chr11 144895246 144895542 -5888011 - AluSx SINE Alu -1 311 21 24 53 0 0 chr11 144895947 144895985 -5887568 + AT_rich Low_complexity Low_complexity 1 38 0 342 322 61 53 chr11 144896683 144896928 -5886625 + MIR SINE MIR 1 247 -15 2072 144 63 0 chr11 144897008 144897370 -5886183 - MLT1B LTR MaLR 0 390 6 211 274 95 21 chr11 144897654 144897749 -5885804 + MIR SINE MIR 141 242 -20 244 346 30 61 chr11 144897842 144898073 -5885480 - L2 LINE L2 -707 2607 2384 244 279 39 39 chr11 144899374 144899503 -5884050 + L1P LINE L1 4879 5007 -1139 1506 189 26 42 chr11 144899604 144899910 -5883643 + AluJb SINE Alu 11 311 -1 581 263 125 43 chr11 144899998 144900439 -5883114 + L1MC/D LINE L1 5270 5746 -2062 816 338 66 18 chr11 144900591 144901091 -5882462 - MLT1G1 LTR MaLR 0 595 72 221 182 18 0 chr11 144901132 144901187 -5882366 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 2919 134 5 2 chr11 144901187 144901611 -5881942 - MSTB LTR MaLR -1 425 1 727 274 71 31 chr11 144903207 144903433 -5880120 + MIR SINE MIR 21 255 -7 336 270 45 18 chr11 144903504 144903615 -5879938 + MER91C DNA MER1_type 25 138 -2 533 318 84 21 chr11 144904567 144904806 -5878747 - MIR SINE MIR -6 256 3 316 198 81 72 chr11 144904821 144904932 -5878621 - MIR SINE MIR -97 165 54 315 329 94 27 chr11 144904967 144905116 -5878437 - MIR SINE MIR -77 185 27 561 76 13 0 chr11 144906299 144906378 -5877175 - MADE1 DNA Mariner 0 80 1 1826 186 0 0 chr11 144906632 144906928 -5876625 - AluJo SINE Alu -16 296 1 1039 244 42 0 chr11 144907112 144907423 -5876130 + MER33 DNA MER1_type 1 324 0 240 217 0 33 chr11 144908915 144908975 -5874578 + CT-rich Low_complexity Low_complexity 4 61 0 231 355 66 13 chr11 144909283 144909435 -5874118 - L2 LINE L2 0 3272 3113 * 260 261 46 0 chr11 144909425 144909490 -5874063 - MIR SINE MIR -109 153 86 405 286 186 20 chr11 144909831 144910030 -5873523 - MIR SINE MIR -11 251 20 2241 115 0 10 chr11 144910563 144910868 -5872685 - AluSx SINE Alu -10 302 1 21 0 0 0 chr11 144910965 144910986 -5872567 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr11 144911406 144911433 -5872120 + (T)n Simple_repeat Simple_repeat 1 27 0 360 275 67 50 chr11 144911472 144911592 -5871961 + MIR3 SINE MIR 2 123 -85 823 221 70 19 chr11 144911643 144911856 -5871697 - MER58A DNA MER1_type 0 224 1 225 0 0 0 chr11 144913210 144913235 -5870318 + (TG)n Simple_repeat Simple_repeat 1 25 0 2072 122 3 11 chr11 144913381 144913706 -5869847 - AluSx SINE Alu 0 323 1 1037 186 5 0 chr11 144913804 144914003 -5869550 - MLT1H LTR MaLR -312 237 38 3725 151 13 36 chr11 144914005 144914270 -5869283 - L1MB2 LINE L1 -182 5989 5719 2265 132 0 0 chr11 144914270 144914581 -5868972 - AluSx SINE Alu -1 311 1 3725 151 13 36 chr11 144914581 144915030 -5868523 - L1MB2 LINE L1 -452 5719 5292 1268 283 55 38 chr11 144915272 144915859 -5867694 - L1ME3A LINE L1 -234 5936 5335 377 39 20 0 chr11 144917761 144917812 -5865741 + (TC)n Simple_repeat Simple_repeat 2 53 0 373 299 80 59 chr11 144919008 144919195 -5864358 + L2 LINE L2 3082 3272 0 23 0 0 0 chr11 144919440 144919463 -5864090 + AT_rich Low_complexity Low_complexity 1 23 0 2100 139 3 7 chr11 144919967 144920277 -5863276 + AluSx SINE Alu 3 311 -1 184 302 171 8 chr11 144920382 144920511 -5863042 + L2 LINE L2 3163 3312 -1 26 0 0 0 chr11 144921280 144921306 -5862247 + AT_rich Low_complexity Low_complexity 1 26 0 296 357 0 0 chr11 144921829 144921927 -5861626 + GA-rich Low_complexity Low_complexity 2 99 0 393 310 155 0 chr11 144923216 144923371 -5860182 - MIR SINE MIR -3 259 81 1187 210 0 5 chr11 144923690 144923904 -5859649 + AluJb SINE Alu 3 215 -97 1993 144 36 27 chr11 144923964 144924298 -5859255 + MER1B DNA MER1_type 1 337 0 525 194 28 0 chr11 144924430 144924538 -5859015 - MIR SINE MIR -70 192 82 234 170 0 21 chr11 144925103 144925150 -5858403 - L2 LINE L2 -4 3309 3264 183 80 0 0 chr11 144926421 144926446 -5857107 + (TA)n Simple_repeat Simple_repeat 2 26 0 233 260 20 0 chr11 144926641 144926691 -5856862 - L2 LINE L2 -11 3261 3211 453 267 133 44 chr11 144927239 144927464 -5856089 + MIR SINE MIR 6 250 -12 632 285 91 39 chr11 144927481 144927867 -5855686 - MLT1L LTR MaLR -9 606 201 2592 80 0 0 chr11 144928214 144928525 -5855028 - AluY SINE Alu 0 311 1 390 278 42 47 chr11 144929235 144929426 -5854127 + MIR SINE MIR 34 223 -39 952 189 42 106 chr11 144929473 144929785 -5853768 + L1MB8 LINE L1 5887 6178 0 1670 165 0 11 chr11 144929792 144930059 -5853494 + AluJo SINE Alu 37 300 -12 636 324 197 28 chr11 144930513 144931162 -5852391 + L2 LINE L2 2093 2851 -463 261 236 0 0 chr11 144932475 144932530 -5851023 + L2 LINE L2 3217 3271 -1 299 303 90 35 chr11 144932736 144932881 -5850672 - MIR3 SINE MIR -2 206 54 1457 131 67 26 chr11 144934180 144934492 -5849061 - L1MC3 LINE L1 -1694 6091 5767 3358 216 103 19 chr11 144934786 144935478 -5848075 - L1MC3 LINE L1 -743 5403 4770 683 229 0 8 chr11 144935478 144935609 -5847944 + FLAM_A SINE Alu 2 131 -2 3358 216 103 19 chr11 144935609 144936621 -5846932 - L1MC3 LINE L1 -1376 4770 3912 1786 291 28 12 chr11 144936621 144937198 -5846355 - L2 LINE L2 -616 2698 2113 677 34 0 11 chr11 144938070 144938159 -5845394 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 1980 176 32 3 chr11 144938428 144938775 -5844778 + MLT1A1 LTR MaLR 9 365 0 257 315 11 11 chr11 144940742 144940834 -5842719 - MER5B DNA MER1_type -1 177 86 705 266 44 20 chr11 144940876 144941079 -5842474 - MIR SINE MIR -42 220 13 2061 168 43 3 chr11 144941093 144941444 -5842109 - MLT1A1 LTR MaLR 0 365 1 2094 83 0 0 chr11 144943383 144943661 -5839892 + AluY SINE Alu 24 301 -10 198 0 0 0 chr11 144993720 144993742 -5789811 + (A)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr11 144994164 144994185 -5789368 + AT_rich Low_complexity Low_complexity 1 21 0 2089 115 0 10 chr11 144994282 144994587 -5788966 + AluSx SINE Alu 1 302 -10 404 286 186 20 chr11 144995120 144995319 -5788234 + MIR SINE MIR 20 251 -11 260 261 46 0 chr11 144995660 144995725 -5787828 + MIR SINE MIR 86 153 -109 224 329 79 26 chr11 144995715 144995867 -5787686 + L2 LINE L2 3113 3272 0 * 240 217 0 33 chr11 144996175 144996235 -5787318 + GA-rich Low_complexity Low_complexity 4 61 0 1033 244 42 0 chr11 144997728 144998039 -5785514 - MER33 DNA MER1_type 0 324 1 1677 186 0 0 chr11 144998223 144998519 -5785034 + AluJo SINE Alu 1 296 -16 566 76 13 0 chr11 144998773 144998852 -5784701 + MADE1 DNA Mariner 1 80 0 306 329 94 27 chr11 145000035 145000184 -5783369 + MIR SINE MIR 27 185 -77 317 198 81 72 chr11 145000219 145000330 -5783223 + MIR SINE MIR 54 165 -97 527 318 84 21 chr11 145000345 145000584 -5782969 + MIR SINE MIR 3 256 -6 323 270 45 18 chr11 145001536 145001647 -5781906 + MER91C DNA MER1_type 3 116 -24 723 274 71 31 chr11 145001718 145001944 -5781609 - MIR SINE MIR -7 255 21 2882 134 5 2 chr11 145003540 145003964 -5779589 + MSTB LTR MaLR 1 425 -1 221 182 18 0 chr11 145003964 145004019 -5779534 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 943 322 74 26 chr11 145004060 145004560 -5778993 + MLT1G1 LTR MaLR 72 595 0 665 254 129 48 chr11 145004712 145005153 -5778400 - L1MC/D LINE L1 -2062 5746 5270 1463 178 26 62 chr11 145005244 145005553 -5778000 - AluJb SINE Alu 0 302 5 226 255 94 40 chr11 145005626 145005775 -5777778 - L1P LINE L1 -1111 5035 4879 3035 173 17 5 chr11 145006376 145007070 -5776483 + L1MC3 LINE L1 5075 5777 -743 1510 132 71 26 chr11 145007364 145007675 -5775878 + L1MC3 LINE L1 5767 6091 -1694 293 303 90 35 chr11 145008974 145009119 -5774434 + MIR3 SINE MIR 54 206 -2 264 167 0 0 chr11 145009338 145009380 -5774173 - L2 LINE L2 -14 3258 3217 610 324 197 28 chr11 145010693 145011342 -5772211 - L2 LINE L2 -463 2851 2093 1540 165 0 11 chr11 145011796 145012063 -5771490 - AluJo SINE Alu -12 300 37 1017 189 42 106 chr11 145012070 145012382 -5771171 - L1MB8 LINE L1 0 6178 5887 374 278 42 47 chr11 145012429 145012620 -5770933 - MIR SINE MIR -39 223 34 2065 82 14 0 chr11 145013330 145013610 -5769943 + AluY SINE Alu 1 284 -27 273 343 29 63 chr11 145014452 145014627 -5768926 + L2 LINE L2 2439 2607 -707 222 263 95 21 chr11 145014720 145014815 -5768738 - MIR SINE MIR -20 242 141 2191 144 63 0 chr11 145015099 145015461 -5768092 + MLT1B LTR MaLR 6 390 0 338 322 61 53 chr11 145015541 145015786 -5767767 - MIR SINE MIR -15 247 1 24 53 0 0 chr11 145016484 145016522 -5767031 + AT_rich Low_complexity Low_complexity 1 38 0 1965 102 0 17 chr11 145016927 145017220 -5766333 + AluSx SINE Alu 21 308 -4 227 221 26 78 chr11 145017343 145017420 -5766133 - MER5A DNA MER1_type -84 105 33 198 103 0 0 chr11 145017894 145017923 -5765630 + (TG)n Simple_repeat Simple_repeat 1 29 0 341 293 114 105 chr11 145018519 145019375 -5764178 - L2 LINE L2 -6 3266 2368 271 249 187 34 chr11 145019344 145019553 -5764000 - L2 LINE L2 -160 3112 2872 * 727 231 21 92 chr11 145019555 145019679 -5763874 + MER58A DNA MER1_type 4 105 -2315 529 231 103 6 chr11 145019679 145019835 -5763718 - MER96 DNA MER1_type -1 174 4 727 231 21 92 chr11 145019835 145019948 -5763605 + MER58A DNA MER1_type 105 224 0 231 36 0 0 chr11 145020270 145020298 -5763255 + (A)n Simple_repeat Simple_repeat 1 28 0 706 285 91 39 chr11 145020645 145021031 -5762522 + MLT1L LTR MaLR 201 606 -9 462 267 133 44 chr11 145021048 145021273 -5762280 - MIR SINE MIR -12 250 6 232 260 20 0 chr11 145021821 145021871 -5761682 + L2 LINE L2 3211 3261 -11 183 80 0 0 chr11 145022066 145022091 -5761462 + (TA)n Simple_repeat Simple_repeat 1 25 0 238 170 0 21 chr11 145023363 145023410 -5760143 + L2 LINE L2 3264 3309 -4 521 194 28 0 chr11 145023975 145024083 -5759470 + MIR SINE MIR 82 192 -70 1965 141 36 27 chr11 145024215 145024549 -5759004 - MER1B DNA MER1_type 0 337 1 1137 196 0 5 chr11 145024609 145024823 -5758730 - AluJb SINE Alu -97 215 3 394 310 155 0 chr11 145025142 145025297 -5758256 + MIR SINE MIR 81 259 -3 296 357 0 0 chr11 145026586 145026684 -5756869 + CT-rich Low_complexity Low_complexity 2 99 0 26 0 0 0 chr11 145027207 145027233 -5756320 + AT_rich Low_complexity Low_complexity 1 26 0 186 302 171 8 chr11 145027681 145027810 -5755743 - L2 LINE L2 -1 3312 3163 1943 139 3 7 chr11 145027915 145028225 -5755328 - AluSx SINE Alu -1 311 3 23 0 0 0 chr11 145028729 145028752 -5754801 + AT_rich Low_complexity Low_complexity 1 23 0 367 299 80 59 chr11 145028997 145029184 -5754369 - L2 LINE L2 0 3272 3082 188 133 0 0 chr11 145030156 145030186 -5753367 + L3 LINE CR1 1221 1250 -327 377 39 20 0 chr11 145030381 145030432 -5753121 + (GA)n Simple_repeat Simple_repeat 2 53 0 1980 176 32 3 chr11 145032649 145032996 -5750557 - MLT1A1 LTR MaLR 0 365 9 677 34 0 11 chr11 145033265 145033354 -5750199 + (TTTC)n Simple_repeat Simple_repeat 1 88 0 1769 291 28 12 chr11 145034226 145034803 -5748750 + L2 LINE L2 2113 2698 -616 2408 248 184 12 chr11 145034803 145035811 -5747742 + L1M3 LINE L1 3912 5093 -1053 243 0 0 0 chr11 145035949 145035976 -5747577 + (A)n Simple_repeat Simple_repeat 1 27 0 1581 148 8 11 chr11 145035978 145036241 -5747312 + L1MB2 LINE L1 5728 5989 -182 1106 204 30 4 chr11 145036243 145036473 -5747080 + MLT1H LTR MaLR 38 273 -276 1935 122 3 11 chr11 145036540 145036865 -5746688 + AluSx SINE Alu 1 323 0 225 0 0 0 chr11 145037011 145037036 -5746517 + (CA)n Simple_repeat Simple_repeat 1 25 0 860 217 71 14 chr11 145038388 145038600 -5744953 + MER58A DNA MER1_type 1 224 0 369 273 66 50 chr11 145038650 145038771 -5744782 - MIR3 SINE MIR -84 124 2 225 0 0 0 chr11 145038810 145038835 -5744718 + (A)n Simple_repeat Simple_repeat 1 25 0 225 285 66 7 chr11 145039501 145039638 -5743915 - L1M4 LINE L1 -856 5290 5146 * 1369 277 56 39 chr11 145039611 145040198 -5743355 + L1ME3A LINE L1 5335 5936 -234 2513 158 16 20 chr11 145040440 145040889 -5742664 + L1M3 LINE L1 5292 5738 -433 2086 133 0 0 chr11 145040889 145041197 -5742356 + AluSx SINE Alu 1 308 -4 205 262 16 0 chr11 145042155 145042216 -5741337 + GA-rich Low_complexity Low_complexity 4 65 0 334 346 16 18 chr11 145042497 145042739 -5740814 + GA-rich Low_complexity Low_complexity 1 241 0 316 294 100 19 chr11 145042771 145042931 -5740622 - MIR SINE MIR -6 256 84 234 284 103 17 chr11 145045139 145045255 -5738298 - MIR SINE MIR -52 210 85 2100 269 204 42 chr11 145045366 145046592 -5736961 + L2 LINE L2 1537 2961 -353 689 206 143 21 chr11 145046591 145046780 -5736773 + L2 LINE L2 3102 3313 0 * 451 246 25 25 chr11 145047116 145047234 -5736319 + MER94 DNA DNA 16 133 -1 402 286 94 69 chr11 145047582 145047743 -5735810 + MIR SINE MIR 3 172 -90 2257 91 7 0 chr11 145047743 145048041 -5735512 + AluSp SINE Alu 1 300 -13 402 286 94 69 chr11 145048041 145048112 -5735441 + MIR SINE MIR 172 240 -22 391 295 70 64 chr11 145048613 145048955 -5734598 + L2 LINE L2 2813 3156 -157 1118 226 0 35 chr11 145048955 145049181 -5734372 + MER58A DNA MER1_type 1 218 -6 479 246 111 8 chr11 145049211 145049337 -5734216 + L2 LINE L2 3175 3313 0 201 298 53 0 chr11 145049346 145049403 -5734150 + L2 LINE L2 2992 3051 -221 246 296 45 97 chr11 145049453 145049700 -5733853 + L2 LINE L2 3017 3250 -22 221 313 78 16 chr11 145050108 145050236 -5733317 + L2 LINE L2 3178 3313 0 268 292 0 0 chr11 145051382 145051447 -5732106 - L2 LINE L2 -2 3311 3247 232 264 172 0 chr11 145051451 145051538 -5732015 - MIR SINE MIR -108 154 53 399 212 24 0 chr11 145052310 145052395 -5731158 + MIR3 SINE MIR 70 156 -52 1988 116 0 30 chr11 145052868 145053171 -5730382 - AluSx SINE Alu -18 294 1 298 316 79 90 chr11 145053193 145053659 -5729894 + L2 LINE L2 2810 3270 -2 303 330 29 0 chr11 145054713 145054816 -5728737 + MIR SINE MIR 70 175 -87 293 268 45 9 chr11 145054910 145055022 -5728531 + L2 LINE L2 3133 3248 -24 292 329 147 53 chr11 145056402 145056996 -5726557 + L2 LINE L2 1929 2466 -806 807 186 71 38 chr11 145056996 145057206 -5726347 + MER20 DNA MER1_type 3 219 0 292 329 147 53 chr11 145057206 145057224 -5726329 + L2 LINE L2 2466 2481 -791 2359 71 0 3 chr11 145057224 145057532 -5726021 - AluY SINE Alu -4 307 1 292 329 147 53 chr11 145057532 145057936 -5725617 + L2 LINE L2 2481 3051 -221 293 329 0 0 chr11 145058095 145058171 -5725382 - MIR SINE MIR -109 99 24 265 228 433 0 chr11 145060520 145060647 -5722906 + MER5A DNA MER1_type 8 189 0 2176 97 13 0 chr11 145060875 145061174 -5722379 + AluSp SINE Alu 1 303 -10 201 273 30 15 chr11 145061288 145061354 -5722199 - L2 LINE L2 -216 3056 2990 186 283 43 0 chr11 145062539 145062585 -5720968 + L2 LINE L2 3254 3301 -12 573 230 121 41 chr11 145062704 145062932 -5720621 - MIR SINE MIR 0 262 18 321 176 0 106 chr11 145062950 145062997 -5720556 - MIR3 SINE MIR -9 199 163 1096 144 27 40 chr11 145062997 145063219 -5720334 + MER20 DNA MER1_type 1 219 0 321 176 0 106 chr11 145063219 145063256 -5720297 - MIR3 SINE MIR -45 163 124 1710 163 12 21 chr11 145064221 145064558 -5718995 - L1MA3 LINE L1 -2 6303 5970 648 268 71 22 chr11 145065443 145065667 -5717886 - MIR SINE MIR -14 248 14 294 337 0 20 chr11 145065854 145065952 -5717601 - MIR SINE MIR -99 163 68 204 40 0 0 chr11 145066527 145066552 -5717001 + (GAAA)n Simple_repeat Simple_repeat 4 28 0 289 323 94 24 chr11 145068192 145068319 -5715234 - MER5A DNA MER1_type -37 152 17 280 281 12 37 chr11 145068338 145068420 -5715133 - MIR SINE MIR -72 136 57 562 296 23 12 chr11 145069009 145069181 -5714372 - MIR3 SINE MIR -16 192 19 219 36 0 0 chr11 145069648 145069676 -5713877 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 301 250 16 0 chr11 145069725 145069789 -5713764 + MIR3 SINE MIR 94 158 -50 299 309 11 11 chr11 145069824 145069918 -5713635 - MER5A DNA MER1_type -25 164 71 256 262 0 60 chr11 145069921 145070005 -5713548 - L2 LINE L2 -1 3271 3193 668 237 76 30 chr11 145070111 145070309 -5713244 + MIR SINE MIR 37 243 -19 198 288 65 65 chr11 145070479 145070632 -5712921 - L2 LINE L2 -223 3049 2897 384 327 9 0 chr11 145071265 145071378 -5712175 + L2 LINE L2 3180 3293 -20 188 304 80 58 chr11 145071385 145071523 -5712030 - L2 LINE L2 -908 2406 2266 237 128 0 0 chr11 145071954 145072001 -5711552 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 193 382 71 27 chr11 145072439 145072664 -5710889 + L2 LINE L2 1946 2180 -1134 327 343 52 52 chr11 145072695 145072908 -5710645 - L2 LINE L2 -35 3237 3025 285 345 156 36 chr11 145072908 145073267 -5710286 + L2 LINE L2 2219 2620 -694 215 317 10 40 chr11 145073754 145073855 -5709698 + MIR SINE MIR 149 246 -16 262 307 139 0 chr11 145074143 145074244 -5709309 + L2 LINE L2 3199 3313 0 196 298 96 21 chr11 145076325 145076419 -5707134 - MIR3 SINE MIR -7 201 101 335 306 73 50 chr11 145076423 145076642 -5706911 + MIR SINE MIR 23 246 -16 190 225 0 0 chr11 145076613 145076653 -5706900 + L2 LINE L2 3263 3302 -11 * 280 316 105 0 chr11 145076655 145076750 -5706803 - MIR SINE MIR -83 125 21 279 325 93 16 chr11 145077190 145077316 -5706237 - MIR SINE MIR -64 144 38 495 344 88 7 chr11 145077725 145077998 -5705555 - L3b LINE CR1 -115 1468 1174 886 140 0 0 chr11 145078355 145078491 -5705062 - FLAM_C SINE Alu -2 141 6 470 354 66 6 chr11 145078497 145078678 -5704875 + MIR SINE MIR 21 212 -50 197 328 95 35 chr11 145080171 145080287 -5703266 + MIR SINE MIR 23 145 -63 21 57 0 0 chr11 145080615 145080650 -5702903 + AT_rich Low_complexity Low_complexity 1 35 0 216 261 0 0 chr11 145082007 145082076 -5701477 + A-rich Low_complexity Low_complexity 1 69 0 530 66 0 13 chr11 145082317 145082393 -5701160 + (GA)n Simple_repeat Simple_repeat 2 76 0 233 73 0 49 chr11 145083785 145083826 -5699727 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 266 345 42 36 chr11 145084257 145084425 -5699128 + MIR3 SINE MIR 40 208 0 286 233 68 14 chr11 145085508 145085581 -5697972 + Charlie7 DNA MER1_type 1 77 -2535 2017 110 0 24 chr11 145085631 145085921 -5697632 - AluSg SINE Alu -27 283 1 436 189 35 49 chr11 145085922 145086065 -5697488 + Charlie7 DNA MER1_type 2471 2611 -1 289 183 14 70 chr11 145086583 145086654 -5696899 - L2 LINE L2 -2 3311 3245 668 291 40 6 chr11 145087167 145087342 -5696211 + MIR SINE MIR 5 185 -77 1558 151 22 7 chr11 145088390 145088661 -5694892 + AluSx SINE Alu 1 275 -37 342 67 0 0 chr11 145088664 145088709 -5694844 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 632 322 134 11 chr11 145088864 145089147 -5694406 + MLT1J LTR MaLR 1 318 -193 360 318 182 12 chr11 145089605 145089775 -5693778 + MIR3 SINE MIR 10 208 0 365 321 65 1 chr11 145090093 145090247 -5693306 + MIR SINE MIR 6 166 -62 204 259 0 19 chr11 145091717 145091771 -5691782 + MIR SINE MIR 120 172 -90 1285 73 2 14 chr11 145094594 145094833 -5688720 + (TCCA)n Simple_repeat Simple_repeat 1 416 0 825 297 42 50 chr11 145094833 145095457 -5688096 - L2 LINE L2 0 3313 2700 211 301 92 43 chr11 145095478 145095641 -5687912 + L2 LINE L2 2890 3060 -212 226 352 105 0 chr11 145096106 145096211 -5687342 - L2 LINE L2 -1 3271 3156 442 300 40 47 chr11 145096244 145096394 -5687159 + MIR SINE MIR 13 161 -101 1957 132 0 3 chr11 145097334 145097630 -5685923 - AluSx SINE Alu -17 295 1 441 339 51 51 chr11 145097632 145097886 -5685667 - MIR SINE MIR -6 256 3 300 333 53 53 chr11 145097896 145097991 -5685562 + L2 LINE L2 3105 3199 -114 503 141 0 0 chr11 145097991 145098069 -5685484 - MADE1 DNA Mariner -2 78 1 300 333 53 53 chr11 145098069 145098180 -5685373 + L2 LINE L2 3198 3311 -2 181 130 0 111 chr11 145099096 145099150 -5684403 - L2 LINE L2 -579 2735 2688 1710 207 39 29 chr11 145099642 145100052 -5683501 + MLT2D LTR ERVL 1 414 0 258 81 0 0 chr11 145100161 145100198 -5683355 + (TG)n Simple_repeat Simple_repeat 2 38 0 192 380 83 0 chr11 145100202 145100310 -5683243 + L2 LINE L2 3155 3271 -1 27 0 0 0 chr11 145100658 145100685 -5682868 + AT_rich Low_complexity Low_complexity 1 27 0 267 317 24 0 chr11 145102070 145102152 -5681401 + L2 LINE L2 3214 3297 -16 275 256 234 7 chr11 145102812 145102956 -5680597 + MIR SINE MIR 20 197 -65 792 216 49 0 chr11 145103644 145103806 -5679747 + MER20 DNA MER1_type 47 216 -3 192 319 100 31 chr11 145103806 145103971 -5679582 - L2 LINE L2 -326 2946 2767 223 429 57 0 chr11 145104287 145104392 -5679161 + L2 LINE L2 3115 3225 -47 433 224 29 92 chr11 145104502 145104774 -5678779 - L1ME4a LINE L1 -1 6120 5866 885 302 20 18 chr11 145104885 145105226 -5678327 - L1ME4a LINE L1 -261 5860 5519 204 297 0 16 chr11 145105431 145105495 -5678058 + MIR SINE MIR 188 250 -12 264 363 99 25 chr11 145105527 145105880 -5677673 + L2 LINE L2 2588 2966 -348 271 319 14 14 chr11 145106114 145106186 -5677367 + L2 LINE L2 3200 3271 -1 198 177 129 65 chr11 145107362 145107424 -5676129 + MIR SINE MIR 116 181 -81 393 259 19 17 chr11 145107645 145107787 -5675766 + MIR SINE MIR 38 179 -29 666 220 165 33 chr11 145107793 145108066 -5675487 - L1ME4a LINE L1 0 6121 5813 250 248 43 60 chr11 145108547 145108664 -5674889 + MLT1J2 LTR MaLR 5 119 -331 328 220 34 41 chr11 145108756 145108865 -5674688 + MLT1I LTR MaLR 319 409 0 5995 145 101 92 chr11 145109041 145109522 -5674031 + L1MC3 LINE L1 6376 6851 -934 1879 204 32 28 chr11 145109522 145109987 -5673566 - MLT1C LTR MaLR 0 467 1 5995 145 101 92 chr11 145109987 145110224 -5673329 + L1MC3 LINE L1 6851 7084 -701 379 226 32 21 chr11 145110224 145110317 -5673236 + MLT1F1 LTR MaLR 41 134 -433 5995 145 101 92 chr11 145110317 145110901 -5672652 + L1MC3 LINE L1 7084 7783 -2 512 276 49 16 chr11 145110934 145111057 -5672496 - MER91A DNA MER1_type -68 128 2 434 309 49 16 chr11 145111139 145111262 -5672291 - MER91A DNA MER1_type -68 128 2 2201 98 10 3 chr11 145112090 145112397 -5671156 + AluSc SINE Alu 1 309 0 234 0 0 0 chr11 145112511 145112537 -5671016 + (A)n Simple_repeat Simple_repeat 1 26 0 829 257 177 16 chr11 145112570 145113021 -5670532 + L1ME4a LINE L1 5566 6089 -32 647 214 244 30 chr11 145114543 145114744 -5668809 - MIR SINE MIR -13 249 6 378 283 65 87 chr11 145115603 145115833 -5667720 + L2 LINE L2 3041 3265 -7 * 1321 292 111 48 chr11 145115816 145116762 -5666791 + L2 LINE L2 1469 2474 -840 444 318 27 0 chr11 145117017 145117165 -5666388 + MIR SINE MIR 63 214 -48 21 36 0 0 chr11 145117590 145117618 -5665935 + AT_rich Low_complexity Low_complexity 1 28 0 402 280 89 13 chr11 145118759 145118916 -5664637 + MIR SINE MIR 23 191 -71 839 286 5 0 chr11 145118945 145119134 -5664419 - MIR SINE MIR -71 191 2 778 294 124 3 chr11 145119138 145119468 -5664085 + L1ME3A LINE L1 5593 5962 -208 25 0 0 0 chr11 145120810 145120835 -5662718 + AT_rich Low_complexity Low_complexity 1 25 0 491 304 55 17 chr11 145120994 145121175 -5662378 + MIR SINE MIR 18 205 -57 4191 161 41 30 chr11 145121244 145121995 -5661558 + L1MC2 LINE L1 5491 6254 -90 1915 101 0 47 chr11 145121995 145122318 -5661235 - AluSx SINE Alu 0 309 1 4191 161 41 30 chr11 145122318 145122401 -5661152 + L1MC2 LINE L1 6254 6335 -9 830 145 0 0 chr11 145123301 145123432 -5660121 - AluJb SINE Alu -3 309 179 364 310 223 11 chr11 145123824 145124008 -5659545 + MIR SINE MIR 19 241 -21 1349 128 0 24 chr11 145125165 145125376 -5658177 - AluSg/x SINE Alu -21 291 86 3084 168 2 31 chr11 145125649 145126168 -5657385 - MER52A LTR ERV1 0 1755 1252 257 300 225 8 chr11 145126457 145126577 -5656976 + MIR3 SINE MIR 3 148 -60 269 235 0 10 chr11 145126642 145126744 -5656809 + (TG)n Simple_repeat Simple_repeat 1 101 0 546 240 0 0 chr11 145126756 145126927 -5656626 + (TG)n Simple_repeat Simple_repeat 2 172 0 320 203 338 15 chr11 145127365 145127498 -5656055 + MER5B DNA MER1_type 2 177 -1 540 317 72 0 chr11 145128990 145129211 -5654342 + MIR SINE MIR 20 256 -6 830 174 30 18 chr11 145129213 145129380 -5654173 + AluJo SINE Alu 123 291 -21 3253 160 34 14 chr11 145129806 145130395 -5653158 + MER6A DNA MER2_type 5 605 0 244 329 58 67 chr11 145130455 145130799 -5652754 - L2 LINE L2 0 3272 2932 25 51 0 0 chr11 145130918 145130957 -5652596 + AT_rich Low_complexity Low_complexity 1 39 0 182 219 16 0 chr11 145131437 145131501 -5652052 + (TATG)n Simple_repeat Simple_repeat 4 68 0 234 280 13 27 chr11 145133141 145133216 -5650337 + GA-rich Low_complexity Low_complexity 3 76 0 303 250 113 8 chr11 145133763 145133887 -5649666 + MIR3 SINE MIR 69 205 -3 3126 66 5 0 chr11 145134104 145134497 -5649056 - L1PA8 LINE L1 -2 6170 5776 243 304 35 35 chr11 145135007 145135122 -5648431 + L2 LINE L2 2875 2989 -283 231 261 0 43 chr11 145135240 145135309 -5648244 - MIR SINE MIR -21 241 176 389 186 0 47 chr11 145138803 145138889 -5644664 + L2 LINE L2 3197 3278 -35 1975 153 0 0 chr11 145139016 145139323 -5644230 - AluSq SINE Alu -6 307 1 232 317 0 0 chr11 145139946 145140006 -5643547 + L2 LINE L2 3235 3294 -19 6556 73 19 21 chr11 145141228 145142382 -5641171 + L1PA11 LINE L1 5020 6173 -1 407 311 75 9 chr11 145142753 145142965 -5640588 + MIR SINE MIR 36 261 -1 2470 63 0 7 chr11 145142967 145143270 -5640283 - AluY SINE Alu -10 301 1 395 256 128 0 chr11 145145825 145145958 -5637595 + MIR SINE MIR 54 203 -59 189 0 0 0 chr11 145146039 145146060 -5637493 + (TAG)n Simple_repeat Simple_repeat 3 23 0 288 0 0 0 chr11 145146060 145146092 -5637461 + (TG)n Simple_repeat Simple_repeat 2 33 0 208 279 51 25 chr11 145147244 145147323 -5636230 + MER5B DNA MER1_type 1 81 -97 405 226 10 20 chr11 145147472 145147574 -5635979 - L2 LINE L2 -2 3311 3211 255 289 94 38 chr11 145148184 145148343 -5635210 + MIR SINE MIR 21 188 -74 213 39 0 0 chr11 145148765 145148791 -5634762 + (TA)n Simple_repeat Simple_repeat 1 26 0 263 253 22 33 chr11 145148900 145148991 -5634562 + MIR SINE MIR 82 171 -91 1886 196 35 43 chr11 145148991 145149500 -5634053 + MLT1D LTR MaLR 1 505 0 394 294 135 0 chr11 145149530 145149693 -5633860 + MIR SINE MIR 73 257 -5 1239 258 176 4 chr11 145149998 145150459 -5633094 - MLT1H1 LTR MaLR -14 541 2 308 284 43 28 chr11 145151759 145151900 -5631653 - MIR SINE MIR -43 219 77 483 119 75 24 chr11 145151906 145152044 -5631509 - MER4C LTR ERV1 -16 648 277 2556 81 25 123 chr11 145152060 145152531 -5631022 - MER4A LTR ERV1 -239 425 1 2074 180 20 22 chr11 145152707 145153152 -5630401 - Charlie4a DNA MER1_type -34 474 31 733 183 0 0 chr11 145153161 145153292 -5630261 - MIR SINE MIR -50 212 82 257 323 89 59 chr11 145153453 145153756 -5629797 + L2 LINE L2 2961 3272 0 2172 133 0 0 chr11 145154616 145154910 -5628643 - AluSg SINE Alu -16 294 1 299 283 101 25 chr11 145155004 145155163 -5628390 + MARNA DNA Mariner 363 533 -53 621 258 90 17 chr11 145155338 145155571 -5627982 + MIR SINE MIR 6 255 -7 258 300 30 10 chr11 145156132 145156232 -5627321 - MARNA DNA Mariner -438 148 47 227 253 89 0 chr11 145157068 145157147 -5626406 - L2 LINE L2 -2 3311 3226 454 307 34 17 chr11 145158428 145158607 -5624946 + MIR SINE MIR 8 189 -73 431 111 0 33 chr11 145158797 145158887 -5624666 + (TC)n Simple_repeat Simple_repeat 2 88 0 895 284 100 51 chr11 145163207 145163655 -5619898 + MER77 LTR ERV1 128 597 -8 391 294 89 24 chr11 145164513 145164743 -5618810 + MIR SINE MIR 4 246 -16 379 270 56 36 chr11 145167921 145167958 -5615595 + L2 LINE L2 2897 2932 -340 2632 209 91 15 chr11 145167958 145168636 -5614917 + MER44D DNA MER2_type 4 605 0 379 270 56 36 chr11 145168636 145168880 -5614673 + L2 LINE L2 2932 3253 -19 254 301 173 23 chr11 145168963 145169096 -5614457 + L2 LINE L2 3119 3271 -1 341 328 30 50 chr11 145169726 145169988 -5613565 - L3b LINE CR1 -143 1440 1184 3761 99 33 15 chr11 145171019 145171562 -5611991 + MER41A LTR ERV1 2 554 0 286 143 351 0 chr11 145171562 145171639 -5611914 + MER41A-int LTR ERV1 1 104 -7652 339 120 360 0 chr11 145171648 145171723 -5611830 + MER41A-int LTR ERV1 1 102 -7654 5373 141 45 9 chr11 145171819 145173202 -5610351 + MER41A-int LTR ERV1 1 1762 -4184 729 116 9 0 chr11 145173204 145173316 -5610237 + MER41A-int LTR ERV1 1902 2014 -3932 1609 115 0 74 chr11 145173322 145173591 -5609962 + MER41A-int LTR ERV1 2262 2510 -3753 1633 102 68 21 chr11 145173599 145173970 -5609583 + MER41A-int LTR ERV1 2733 3671 -3115 * 12677 101 28 25 chr11 145173949 145174090 -5609463 + MER41A-int LTR ERV1 2709 2848 -3098 203 27 0 81 chr11 145174090 145174127 -5609426 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 12677 101 28 25 chr11 145174127 145176406 -5607147 + MER41A-int LTR ERV1 2848 5944 -2 3922 119 15 0 chr11 145176406 145176952 -5606601 + MER41A LTR ERV1 1 554 0 2429 76 0 7 chr11 145179483 145179787 -5603766 - AluSc SINE Alu -7 302 1 344 22 22 0 chr11 145181561 145181606 -5601947 + (TG)n Simple_repeat Simple_repeat 1 46 0 3373 146 59 27 chr11 145181646 145182305 -5601248 - L1MB3 LINE L1 0 6183 5504 180 238 76 19 chr11 145182412 145182517 -5601036 - MIR SINE MIR -125 137 27 2060 136 123 23 chr11 145182589 145182978 -5600575 + MSTA LTR MaLR 1 428 0 321 283 44 18 chr11 145183516 145183629 -5599924 - MER103 DNA DNA -1 165 50 447 92 0 0 chr11 145183991 145184056 -5599497 + (TA)n Simple_repeat Simple_repeat 2 66 0 2122 66 81 0 chr11 145184056 145184328 -5599225 - AluY SINE Alu -17 294 1 430 304 43 16 chr11 145184853 145185037 -5598516 + LTR16A1 LTR ERVL 239 427 -30 239 93 23 0 chr11 145185939 145185982 -5597571 + (TC)n Simple_repeat Simple_repeat 1 44 0 612 278 64 5 chr11 145186689 145186876 -5596677 - MIR SINE MIR -61 201 4 198 290 0 16 chr11 145187594 145187656 -5595897 - L2 LINE L2 -8 3264 3204 184 219 0 0 chr11 145187667 145187708 -5595845 + L2 LINE L2 3141 3181 -91 236 312 64 51 chr11 145187772 145187929 -5595624 - L2 LINE L2 -181 3091 2933 518 261 126 1 chr11 145188688 145188997 -5594556 - LTR33A LTR ERVL -126 397 13 765 179 0 0 chr11 145190803 145191128 -5592425 + (TG)n Simple_repeat Simple_repeat 1 325 0 189 152 0 0 chr11 145191622 145191655 -5591898 - MIR SINE MIR -110 152 120 415 286 99 12 chr11 145192089 145192250 -5591303 - MIR SINE MIR -42 220 46 3649 153 54 60 chr11 145193934 145194707 -5588846 + LTR1 LTR ERV1 17 785 0 230 290 72 72 chr11 145195089 145195227 -5588326 - MIR SINE MIR -123 139 2 219 326 63 42 chr11 145195292 145195387 -5588166 + L2 LINE L2 3154 3250 -22 2231 132 6 33 chr11 145196163 145196528 -5587025 - MLT1A1 LTR MaLR -6 359 5 715 255 133 3 chr11 145196624 145196918 -5586635 + LTR16C LTR ERVL 160 491 0 225 146 104 21 chr11 145198400 145198448 -5585105 - MER115 DNA AcHobo -443 250 199 296 254 59 68 chr11 145198759 145198877 -5584676 + MIR SINE MIR 25 141 -67 244 258 30 15 chr11 145199262 145199328 -5584225 - L2 LINE L2 -51 3262 3196 1420 200 100 49 chr11 145199523 145200009 -5583544 + MER66A LTR ERV1 135 478 0 339 325 33 0 chr11 145202233 145202353 -5581200 - MIR3 SINE MIR -4 204 81 309 109 0 0 chr11 145202542 145202588 -5580965 + (CAAT)n Simple_repeat Simple_repeat 3 48 0 200 284 0 114 chr11 145203904 145203970 -5579583 + L2 LINE L2 3232 3287 -26 2065 105 10 7 chr11 145203970 145204266 -5579287 - AluSg SINE Alu -13 297 1 200 284 0 114 chr11 145204266 145204287 -5579266 + L2 LINE L2 3287 3309 -4 322 299 89 20 chr11 145205334 145205501 -5578052 - MIR3 SINE MIR -19 189 6 1905 149 0 0 chr11 145208991 145209279 -5574274 - AluSx SINE Alu -24 288 1 185 310 108 32 chr11 145210807 145210965 -5572588 + L2 LINE L2 2820 2989 -283 464 328 204 0 chr11 145211231 145211496 -5572057 + L3 LINE CR1 1252 1570 -7 477 240 110 13 chr11 145211567 145211723 -5571830 - MER5A DNA MER1_type -2 187 11 183 162 0 0 chr11 145212978 145213015 -5570538 + (CAT)n Simple_repeat Simple_repeat 2 38 0 232 381 55 24 chr11 145215316 145215480 -5568073 + MIR3 SINE MIR 1 168 -68 296 281 130 62 chr11 145216315 145216461 -5567092 - MIR SINE MIR -70 192 37 1196 231 26 72 chr11 145216474 145216889 -5566664 - L1ME1 LINE L1 -5 6161 5766 236 330 29 19 chr11 145219456 145219559 -5563994 + MIR SINE MIR 28 131 -77 251 220 20 0 chr11 145220015 145220065 -5563488 + (TG)n Simple_repeat Simple_repeat 2 52 0 400 268 47 39 chr11 145221675 145221802 -5561751 - L2 LINE L2 0 3272 3145 852 167 0 0 chr11 145221858 145222038 -5561515 + FLAM_C SINE Alu 2 181 0 1059 87 10 10 chr11 145222185 145222395 -5561158 + (TCTA)n Simple_repeat Simple_repeat 1 210 0 578 319 114 50 chr11 145222460 145222937 -5560616 + L2 LINE L2 1220 1772 -1542 291 54 0 0 chr11 145222937 145222974 -5560579 + (CAA)n Simple_repeat Simple_repeat 1 37 0 578 319 114 50 chr11 145222974 145223310 -5560243 + L2 LINE L2 1772 2085 -1229 1287 35 17 0 chr11 145223314 145223487 -5560066 + (TTC)n Simple_repeat Simple_repeat 1 176 0 246 156 0 0 chr11 145224102 145224147 -5559406 + (CA)n Simple_repeat Simple_repeat 2 46 0 425 279 56 127 chr11 145224621 145225255 -5558298 - L2 LINE L2 0 3313 2239 2149 113 3 3 chr11 145225305 145225615 -5557938 + AluSx SINE Alu 1 310 -2 228 182 0 0 chr11 145225625 145225669 -5557884 + A-rich Low_complexity Low_complexity 1 44 0 353 260 200 25 chr11 145226648 145226841 -5556712 + MIR SINE MIR 3 231 -31 305 172 16 0 chr11 145227701 145227765 -5555788 + (CA)n Simple_repeat Simple_repeat 1 65 0 206 292 0 0 chr11 145227768 145227816 -5555737 + L2 LINE L2 3264 3311 -2 211 313 134 6 chr11 145228656 145228835 -5554718 - L2 LINE L2 -260 3012 2811 261 251 54 157 chr11 145229287 145229694 -5553859 - L2 LINE L2 -972 2342 1978 208 291 182 20 chr11 145231124 145231272 -5552281 + L2 LINE L2 2565 2736 -578 466 256 122 94 chr11 145231427 145231779 -5551774 + L2 LINE L2 2911 3272 0 201 178 0 0 chr11 145231806 145231851 -5551702 + CT-rich Low_complexity Low_complexity 4 48 0 185 255 39 0 chr11 145232387 145232438 -5551115 - L3b LINE CR1 -114 1469 1417 3765 198 58 49 chr11 145233955 145235137 -5548416 + L1MB4 LINE L1 4168 5360 -786 5892 144 30 24 chr11 145235137 145235250 -5548303 + L1MC1 LINE L1 5222 5333 -1000 1826 114 43 23 chr11 145235250 145235549 -5548004 + AluY SINE Alu 1 305 -6 5892 144 30 24 chr11 145235549 145236542 -5547011 + L1MC1 LINE L1 5333 6333 0 2917 151 14 6 chr11 145236535 145237039 -5546514 + L1M4 LINE L1 5315 5822 -362 * 324 120 0 0 chr11 145237293 145237343 -5546210 + (A)n Simple_repeat Simple_repeat 1 50 0 849 193 18 12 chr11 145237345 145237511 -5546042 + AluJb SINE Alu 120 286 -26 372 328 52 0 chr11 145237591 145237725 -5545828 - L2 LINE L2 -212 3060 2920 258 273 0 13 chr11 145237925 145237939 -5545614 + GA-rich Low_complexity Low_complexity 1 14 -62 1882 107 53 13 chr11 145237939 145238239 -5545314 + AluSx SINE Alu 1 312 0 258 273 0 13 chr11 145238239 145238301 -5545252 + GA-rich Low_complexity Low_complexity 14 76 0 394 322 22 11 chr11 145240965 145241148 -5542405 + L1MB4 LINE L1 5434 5618 -552 1900 110 0 0 chr11 145243746 145243991 -5539562 + AluSg SINE Alu 56 300 -10 369 276 57 16 chr11 145245307 145245430 -5538123 - L2 LINE L2 -4 3268 3141 338 272 12 0 chr11 145246777 145246858 -5536695 + L3 LINE CR1 1495 1576 -1 261 57 0 0 chr11 145247671 145247706 -5535847 + (ATG)n Simple_repeat Simple_repeat 2 36 0 1400 248 72 23 chr11 145250493 145250976 -5532577 + L2 LINE L2 2807 3313 0 978 256 8 8 chr11 145251092 145251334 -5532219 + MIR SINE MIR 21 262 0 286 267 145 23 chr11 145251394 145251525 -5532028 - L2 LINE L2 0 3313 3167 909 204 105 43 chr11 145251543 145251867 -5531686 + MER2 DNA MER2_type 1 344 0 387 330 33 33 chr11 145253260 145253472 -5530081 - MIR SINE MIR -13 249 38 2656 43 0 0 chr11 145254445 145254748 -5528805 + AluY SINE Alu 3 305 -6 186 43 0 0 chr11 145254891 145254914 -5528639 + (A)n Simple_repeat Simple_repeat 1 23 0 560 290 38 26 chr11 145256930 145257205 -5526348 + MLT1I LTR MaLR 98 359 -50 357 261 35 9 chr11 145258829 145258944 -5524609 + L2 LINE L2 3196 3313 0 241 324 76 0 chr11 145259069 145259174 -5524379 - MIR SINE MIR -75 133 21 851 229 5 26 chr11 145259184 145259376 -5524177 - MER5A DNA MER1_type 0 189 2 2613 177 16 2 chr11 145259901 145260392 -5523161 + L1MB4 LINE L1 5683 6180 0 298 243 186 29 chr11 145261547 145261687 -5521866 - MER117 DNA MER1_type -1 196 35 317 194 42 35 chr11 145261822 145261966 -5521587 + (TTATA)n Simple_repeat Simple_repeat 4 148 0 300 233 40 139 chr11 145262866 145263068 -5520485 - MIR SINE MIR -12 250 69 222 323 44 71 chr11 145263454 145263680 -5519873 + L2 LINE L2 848 1067 -2247 2627 164 78 22 chr11 145263804 145264327 -5519226 + MLT2B3 LTR ERVL 2 434 -19 1059 115 20 19 chr11 145264327 145265046 -5518507 + (TCTA)n Simple_repeat Simple_repeat 3 895 0 363 328 113 44 chr11 145265122 145265581 -5517972 + L2 LINE L2 1235 1774 -1540 291 54 0 0 chr11 145265581 145265618 -5517935 + (CAA)n Simple_repeat Simple_repeat 1 37 0 363 328 113 44 chr11 145265618 145265954 -5517599 + L2 LINE L2 1774 2085 -1229 879 83 0 0 chr11 145265958 145266079 -5517474 + (TTC)n Simple_repeat Simple_repeat 2 122 0 1397 228 29 3 chr11 145266225 145266572 -5516981 + L1MB7 LINE L1 5820 6175 -9 2414 79 3 0 chr11 145267259 145267562 -5515991 + AluY SINE Alu 1 304 -7 296 279 79 21 chr11 145267648 145267788 -5515765 + MLT1L LTR MaLR 466 613 -2 475 277 51 0 chr11 145268007 145268144 -5515409 - MIR SINE MIR -74 188 45 201 147 0 0 chr11 145270430 145270464 -5513089 + (T)n Simple_repeat Simple_repeat 1 34 0 418 231 39 31 chr11 145271025 145271155 -5512398 + MER5A DNA MER1_type 37 167 -22 272 333 29 10 chr11 145271616 145271718 -5511835 + MIR SINE MIR 21 124 -84 411 296 76 12 chr11 145271788 145271960 -5511593 + MIR SINE MIR 64 246 -16 198 0 0 0 chr11 145271974 145271996 -5511557 + (CAT)n Simple_repeat Simple_repeat 3 24 0 1224 239 71 55 chr11 145273546 145274028 -5509525 + MER39 LTR ERV1 1 683 0 188 293 8 81 chr11 145276353 145276476 -5507077 - MIR SINE MIR 0 262 149 279 279 88 34 chr11 145276523 145276670 -5506883 - MIR SINE MIR -96 166 12 265 317 83 14 chr11 145278930 145279075 -5504478 + L3 LINE CR1 1419 1573 -4 1986 109 21 21 chr11 145279730 145280049 -5503504 + AluSc SINE Alu 1 309 0 513 197 16 33 chr11 145280672 145280794 -5502759 - MLT1D LTR MaLR -383 122 3 227 319 44 62 chr11 145280980 145281093 -5502460 + L2 LINE L2 3182 3292 -21 190 243 81 40 chr11 145281457 145281531 -5502022 + L3b LINE CR1 1501 1577 -6 2041 126 10 0 chr11 145281742 145282036 -5501517 + AluSx SINE Alu 1 297 -15 2609 75 40 0 chr11 145282036 145282408 -5501145 - L1P LINE L1 -805 5341 4955 5965 51 4 1 chr11 145282408 145283131 -5500422 + L1PA7 LINE L1 5427 6153 -1 225 318 0 0 chr11 145283638 145283701 -5499852 + (TG)n Simple_repeat Simple_repeat 1 63 0 242 339 195 0 chr11 145284287 145284482 -5499071 - L3 LINE CR1 -14 1563 1331 198 167 0 0 chr11 145285785 145285821 -5497732 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr11 145287074 145287096 -5496457 + AT_rich Low_complexity Low_complexity 1 22 0 221 290 226 0 chr11 145287444 145287537 -5496016 + MIR SINE MIR 30 143 -65 187 229 257 0 chr11 145287715 145287785 -5495768 + MIR SINE MIR 165 252 -10 1380 222 85 91 chr11 145288471 145288907 -5494646 + MLT2B1 LTR ERVL 1 438 24 259 77 19 19 chr11 145288907 145288959 -5494594 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 1380 222 85 91 chr11 145288959 145288997 -5494556 + MLT2B1 LTR ERVL 438 377 -37 195 42 0 0 chr11 145288997 145289021 -5494532 + (CA)n Simple_repeat Simple_repeat 1 24 0 1380 222 85 91 chr11 145289021 145289054 -5494499 + MLT2B1 LTR ERVL 376 408 -6 198 0 0 0 chr11 145289068 145289090 -5494463 + (TTG)n Simple_repeat Simple_repeat 2 23 0 262 336 36 36 chr11 145289094 145289317 -5494236 + L2 LINE L2 2129 2351 -963 210 37 0 0 chr11 145289703 145289730 -5493823 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 15578 132 21 3 chr11 145290387 145292762 -5490791 + Tigger1 DNA MER2_type 1 2418 0 426 53 0 0 chr11 145292940 145292997 -5490556 + (CA)n Simple_repeat Simple_repeat 2 58 0 412 268 127 0 chr11 145296372 145296514 -5487039 + MIR SINE MIR 89 248 -14 1111 156 71 38 chr11 145297363 145297574 -5485979 + MER20 DNA MER1_type 2 219 0 192 200 0 0 chr11 145297983 145298023 -5485530 + GA-rich Low_complexity Low_complexity 2 41 0 524 269 29 6 chr11 145298434 145298605 -5484948 + MIR3 SINE MIR 11 185 -23 315 0 0 0 chr11 145301806 145301841 -5481712 + (GA)n Simple_repeat Simple_repeat 2 36 0 234 239 60 30 chr11 145302034 145302101 -5481452 + LTR67 LTR ERVL 113 181 -376 343 210 260 0 chr11 145302257 145302357 -5481196 + LTR67 LTR ERVL 431 556 -1 189 0 0 0 chr11 145302736 145302757 -5480796 + (A)n Simple_repeat Simple_repeat 1 21 0 332 281 10 10 chr11 145303115 145303211 -5480342 + MIR SINE MIR 45 140 -68 459 316 87 18 chr11 145303228 145303446 -5480107 + MIR SINE MIR 24 256 -6 363 252 24 41 chr11 145303452 145303575 -5479978 - L2 LINE L2 0 3313 3193 1050 159 34 11 chr11 145303941 145304117 -5479436 - MER7A DNA MER2_type 0 336 157 384 138 0 31 chr11 145304126 145304191 -5479362 - MER7A DNA MER2_type -98 238 176 473 106 64 75 chr11 145304203 145304297 -5479256 - MER7A DNA MER2_type -88 248 156 965 191 0 71 chr11 145304304 145304483 -5479070 - AluJo SINE Alu -33 279 116 186 71 0 0 chr11 145304483 145304511 -5479042 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 965 191 0 71 chr11 145304511 145304541 -5479012 - AluJo SINE Alu -196 116 85 984 123 7 0 chr11 145304549 145304687 -5478866 - AluJb SINE Alu -173 139 1 401 177 76 0 chr11 145304689 145304768 -5478785 - MER7A DNA MER2_type -263 83 1 317 369 10 15 chr11 145304805 145305003 -5478550 - L3 LINE CR1 -32 1545 1349 296 350 42 0 chr11 145304997 145305117 -5478436 - L2 LINE L2 -5 3267 3143 * 287 206 45 110 chr11 145305221 145305376 -5478177 + MER5A DNA MER1_type 44 188 -1 279 355 38 22 chr11 145305540 145305723 -5477830 - L3 LINE CR1 -481 1096 911 236 350 86 0 chr11 145306196 145306359 -5477194 - MIR SINE MIR 0 262 86 222 175 0 0 chr11 145307083 145307123 -5476430 - L2 LINE L2 -4 3309 3270 325 179 0 0 chr11 145307151 145307207 -5476346 + L2 LINE L2 3257 3312 -1 21 36 0 0 chr11 145308791 145308819 -5474734 + AT_rich Low_complexity Low_complexity 1 28 0 416 298 37 19 chr11 145309117 145309278 -5474275 + MIR SINE MIR 35 198 -64 222 341 76 22 chr11 145309620 145309843 -5473710 - L2 LINE L2 -212 3060 2826 2172 162 106 17 chr11 145312913 145313377 -5470176 + MLT1D LTR MaLR 1 505 0 989 194 15 10 chr11 145313387 145313583 -5469970 - MER105 DNA DNA -2 202 6 269 323 23 23 chr11 145314412 145314542 -5469011 + MIR SINE MIR 20 149 -113 443 263 138 0 chr11 145316465 145316625 -5466928 - MER5A DNA MER1_type -5 184 3 352 296 57 23 chr11 145318162 145318338 -5465215 + MIR SINE MIR 52 233 -29 193 308 0 0 chr11 145320886 145320938 -5462615 - L2 LINE L2 -17 3255 3204 207 0 0 0 chr11 145321006 145321029 -5462524 + (TTA)n Simple_repeat Simple_repeat 2 24 0 263 239 45 34 chr11 145321770 145321858 -5461695 - L3 LINE CR1 -7 1570 1482 325 273 74 0 chr11 145323116 145323237 -5460316 + L2 LINE L2 3136 3265 -7 210 71 0 0 chr11 145323723 145323751 -5459802 + (TG)n Simple_repeat Simple_repeat 2 29 0 369 0 0 0 chr11 145328450 145328491 -5455062 + (TG)n Simple_repeat Simple_repeat 1 41 0 198 0 0 0 chr11 145328683 145328705 -5454848 + (TG)n Simple_repeat Simple_repeat 2 23 0 1128 283 139 11 chr11 145330834 145331367 -5452186 + L2 LINE L2 2067 2667 -647 2154 114 0 7 chr11 145331397 145331687 -5451866 + AluSx SINE Alu 1 288 -24 444 296 102 24 chr11 145331741 145331947 -5451606 - MIR SINE MIR -21 241 20 1095 320 9 102 chr11 145332582 145332916 -5450637 - AluSq SINE Alu 0 303 1 2154 147 6 0 chr11 145333033 145333346 -5450207 - MER1B DNA MER1_type 0 339 25 1532 152 0 16 chr11 145333347 145333597 -5449956 + AluSx SINE Alu 45 290 -22 288 228 0 0 chr11 145333620 145333677 -5449876 - L2 LINE L2 -548 2766 2710 1134 115 6 24 chr11 145333705 145333870 -5449683 - AluSc SINE Alu -14 295 134 413 208 129 112 chr11 145334074 145334252 -5449301 + MER5A DNA MER1_type 9 189 0 3742 194 61 37 chr11 145335581 145336412 -5447141 + MER21B LTR ERV1 12 862 -1 3424 253 98 39 chr11 145336476 145337846 -5445707 + L2 LINE L2 1318 2767 -547 335 308 45 6 chr11 145337849 145338005 -5445548 + MIR SINE MIR 90 251 -11 224 259 37 19 chr11 145338908 145339016 -5444537 + CT-rich Low_complexity Low_complexity 3 112 0 1708 146 4 4 chr11 145339073 145339334 -5444219 - AluSx SINE Alu -18 294 34 3238 139 19 8 chr11 145339855 145340381 -5443172 - Tigger4(Zombi) DNA MER2_type 0 2731 2200 390 229 0 12 chr11 145340359 145340442 -5443111 - Tigger4(Zombi) DNA MER2_type -2645 86 5 * 243 162 81 81 chr11 145340394 145340468 -5443085 + MER46A DNA MER2_type 95 168 -68 * 25 51 0 0 chr11 145340742 145340781 -5442772 + AT_rich Low_complexity Low_complexity 1 39 0 1567 183 72 11 chr11 145340848 145341127 -5442426 + AluJo SINE Alu 1 296 -16 976 198 12 6 chr11 145344926 145345088 -5438465 - FAM SINE Alu -9 166 4 369 279 104 31 chr11 145345162 145345360 -5438193 - MIR SINE MIR -41 221 16 1151 247 100 33 chr11 145345431 145345820 -5437733 - LTR40b LTR ERVL -47 415 1 231 343 57 19 chr11 145345858 145345963 -5437590 - MIR SINE MIR -152 110 2 2024 129 48 0 chr11 145346157 145346452 -5437101 - AluSc SINE Alu 0 309 1 432 355 70 10 chr11 145346861 145347061 -5436492 + LTR33 LTR ERVL 57 268 -253 207 0 0 0 chr11 145347061 145347084 -5436469 + (T)n Simple_repeat Simple_repeat 1 23 0 2010 141 0 16 chr11 145347201 145347514 -5436039 - AluJo SINE Alu -2 310 3 609 264 118 9 chr11 145347603 145347815 -5435738 + MIR SINE MIR 23 257 -5 243 354 142 37 chr11 145348385 145348786 -5434767 + L2 LINE L2 2453 2895 -419 946 243 240 32 chr11 145348828 145349236 -5434317 + LTR33 LTR ERVL 27 519 -2 400 341 0 15 chr11 145349652 145349787 -5433766 + HERVL LTR ERVL 520 652 -5002 1562 186 7 7 chr11 145350060 145350334 -5433219 + AluJb SINE Alu 6 279 -33 198 0 0 0 chr11 145350338 145350360 -5433193 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 680 219 85 92 chr11 145350403 145350686 -5432867 + LTR33 LTR ERVL 241 521 0 1015 169 82 53 chr11 145350755 145350998 -5432555 - MER21B LTR ERV1 -19 844 595 833 183 16 0 chr11 145350999 145351125 -5432428 - FLAM_A SINE Alu -14 128 1 2495 199 48 53 chr11 145351125 145351689 -5431864 - MER21B LTR ERV1 -258 605 45 414 230 14 0 chr11 145351690 145351764 -5431789 - MER21B LTR ERV1 -770 93 19 291 228 65 33 chr11 145351762 145351854 -5431699 - MER21B LTR ERV1 -757 106 12 * 798 247 102 0 chr11 145352140 145352375 -5431178 - MIR SINE MIR 0 262 4 2070 122 98 0 chr11 145352399 145352735 -5430818 + L1MB3 LINE L1 5815 6183 0 1355 318 53 47 chr11 145353211 145354214 -5429339 + L2 LINE L2 2148 3161 -152 213 39 0 0 chr11 145354214 145354240 -5429313 + (TTCC)n Simple_repeat Simple_repeat 2 27 0 1355 318 53 47 chr11 145354240 145354387 -5429166 + L2 LINE L2 3161 3306 -7 2201 195 32 4 chr11 145354516 145354978 -5428575 + L1MB7 LINE L1 5709 6183 -1 519 346 77 0 chr11 145355895 145356129 -5427424 + MIR SINE MIR 1 252 -10 632 260 110 9 chr11 145356132 145356451 -5427102 - L1MCa LINE L1 -2537 3889 3539 225 191 0 0 chr11 145356451 145356498 -5427055 + (TA)n Simple_repeat Simple_repeat 1 47 0 301 242 0 63 chr11 145356504 145356599 -5426954 - L1MC4 LINE L1 -1340 6702 6614 * 305 203 0 16 chr11 145356566 145356630 -5426923 - L1MCa LINE L1 -4358 2068 2006 1462 91 18 118 chr11 145356636 145356827 -5426726 + Tigger2 DNA MER2_type 3 212 -2506 6748 79 35 2 chr11 145356827 145358097 -5425456 + L1PA8 LINE L1 4866 6164 -8 1462 91 18 118 chr11 145358097 145358247 -5425306 + Tigger2 DNA MER2_type 212 2579 -139 806 210 115 0 chr11 145358248 145358448 -5425105 - AluJo SINE Alu -8 304 82 786 190 0 7 chr11 145358448 145358590 -5424963 + Tigger2 DNA MER2_type 2577 2717 -1 3876 262 47 38 chr11 145358604 145361598 -5421955 - L1ME LINE L1 -2831 3249 200 318 310 35 26 chr11 145363203 145363316 -5420237 + L2 LINE L2 3141 3254 -18 399 270 13 57 chr11 145363327 145363486 -5420067 + MIR SINE MIR 111 262 0 1777 120 0 0 chr11 145363514 145363756 -5419797 - AluSx SINE Alu -26 286 45 31 0 0 0 chr11 145364011 145364042 -5419511 + AT_rich Low_complexity Low_complexity 1 31 0 235 261 0 14 chr11 145366603 145366672 -5416881 + (TAAA)n Simple_repeat Simple_repeat 4 71 0 802 128 2 4 chr11 145366797 145366937 -5416616 + MSTA LTR MaLR 1 123 -303 6410 188 60 2 chr11 145366937 145368089 -5415464 + MSTA-int LTR MaLR 308 1526 -125 1445 179 88 28 chr11 145368189 145368507 -5415046 + MSTA LTR MaLR 92 428 0 236 186 71 43 chr11 145368587 145368657 -5414896 - MIR SINE MIR -116 92 21 234 244 105 12 chr11 145369801 145369887 -5413666 + L2 LINE L2 3179 3272 0 276 248 233 39 chr11 145370285 145370414 -5413139 - MIR SINE MIR -14 248 95 325 241 0 35 chr11 145370478 145370565 -5412988 - MER4-int LTR ERV1 -5439 1159 1076 593 250 151 16 chr11 145372181 145372373 -5411180 - MIR SINE MIR -31 231 14 611 189 155 0 chr11 145372524 145372672 -5410881 + MER58C DNA MER1_type 42 212 -3 199 121 0 0 chr11 145375259 145375292 -5408261 - L2 LINE L2 -2 3311 3279 311 277 121 28 chr11 145376349 145376490 -5407063 - MIR SINE MIR -61 201 48 259 191 235 52 chr11 145377521 145377636 -5405917 - L2 LINE L2 0 3272 3137 194 298 122 15 chr11 145377648 145377779 -5405774 + MIR SINE MIR 97 241 -21 189 310 35 62 chr11 145377869 145377982 -5405571 + L3b LINE CR1 1408 1517 -66 186 43 0 0 chr11 145378175 145378198 -5405355 + (TC)n Simple_repeat Simple_repeat 2 24 0 183 80 0 0 chr11 145378535 145378560 -5404993 + (CA)n Simple_repeat Simple_repeat 1 25 0 1507 330 48 3 chr11 145378578 145379145 -5404408 - MER115 DNA AcHobo -9 684 93 184 333 14 14 chr11 145379208 145379280 -5404273 + MER5B DNA MER1_type 107 178 0 3199 107 2 5 chr11 145379287 145379749 -5403804 + L1PB2 LINE L1 5712 6172 0 853 257 11 5 chr11 145381016 145381203 -5402350 + MER5A DNA MER1_type 1 188 -1 682 246 11 22 chr11 145381212 145381391 -5402162 + MER5B DNA MER1_type 1 177 -1 1734 148 0 69 chr11 145382542 145382859 -5400694 - AluJb SINE Alu -17 295 1 442 183 226 0 chr11 145384041 145384134 -5399419 - MER81 DNA DNA 0 114 1 460 307 16 31 chr11 145384331 145384523 -5399030 + L2 LINE L2 3124 3312 -1 1599 157 3 44 chr11 145385967 145386260 -5397293 - AluJo SINE Alu -12 300 20 182 36 0 36 chr11 145389414 145389442 -5394111 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 524 288 20 40 chr11 145390198 145390396 -5393157 + MLT1I LTR MaLR 133 326 -83 201 121 0 0 chr11 145390870 145390903 -5392650 + (CACCAT)n Simple_repeat Simple_repeat 5 37 0 2442 192 147 146 chr11 145391951 145392236 -5391317 - L1MC3 LINE L1 -166 7619 7336 2816 105 3 0 chr11 145392236 145392599 -5390954 + THE1B LTR MaLR 1 364 0 2442 192 147 146 chr11 145392599 145392707 -5390846 - L1MC3 LINE L1 -449 7336 7230 448 160 53 0 chr11 145392707 145392782 -5390771 - MLT1F1 LTR MaLR -443 124 46 2442 192 147 146 chr11 145392782 145393518 -5390035 - L1MC3 LINE L1 -555 7230 6414 298 380 93 0 chr11 145393929 145394058 -5389495 + L2 LINE L2 3121 3261 -11 339 289 79 33 chr11 145394934 145395086 -5388467 - MER5B DNA MER1_type -1 177 19 * 367 248 95 66 chr11 145394950 145395087 -5388466 + MER5A DNA MER1_type 31 171 -18 345 203 0 14 chr11 145395242 145395311 -5388242 + MER112 DNA MER1_type 10 77 -183 272 263 12 38 chr11 145395471 145395551 -5388002 + MER112 DNA MER1_type 178 255 -5 258 305 126 0 chr11 145396665 145396760 -5386793 - MIR SINE MIR -106 156 50 254 0 83 0 chr11 145397184 145397220 -5386333 + T-rich Low_complexity Low_complexity 2 40 0 190 348 191 0 chr11 145397773 145397888 -5385665 + MIR3 SINE MIR 5 141 -67 542 264 67 17 chr11 145397915 145398093 -5385460 - MIR SINE MIR 0 262 76 927 227 22 0 chr11 145398322 145398507 -5385046 - MER5A DNA MER1_type 0 189 1 233 333 15 53 chr11 145398578 145398621 -5384932 + MIR SINE MIR 114 157 -105 2129 157 24 9 chr11 145398621 145398959 -5384594 + MER61A LTR ERV1 1 343 0 233 333 15 53 chr11 145398959 145399047 -5384506 + MIR SINE MIR 157 240 -22 932 283 52 32 chr11 145399214 145399621 -5383932 - LTR33 LTR ERVL -3 518 104 377 277 101 0 chr11 145399675 145399794 -5383759 - MIR SINE MIR -117 145 15 21 36 0 0 chr11 145399841 145399869 -5383684 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 145400135 145400157 -5383396 + AT_rich Low_complexity Low_complexity 1 22 0 474 254 33 77 chr11 145401186 145401367 -5382186 + MER69A DNA AcHobo 1 173 -4 1483 214 69 6 chr11 145401460 145401792 -5381761 - MLT1A1 LTR MaLR -3 362 10 534 319 75 5 chr11 145402066 145402254 -5381299 + MIR SINE MIR 48 248 -14 276 316 60 8 chr11 145402572 145402689 -5380864 - L2 LINE L2 -9 3304 3182 393 286 32 26 chr11 145402758 145402893 -5380660 + MER103 DNA DNA 12 150 -16 2332 99 0 0 chr11 145402893 145403197 -5380356 - AluSc SINE Alu -5 304 1 393 286 32 26 chr11 145403197 145403215 -5380338 + MER103 DNA DNA 150 166 0 200 331 65 53 chr11 145403699 145403868 -5379685 - L2 LINE L2 -640 2674 2504 3007 183 78 3 chr11 145404652 145405138 -5378415 - MER6 DNA MER2_type 0 865 262 207 0 0 0 chr11 145405138 145405161 -5378392 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 3007 183 78 3 chr11 145405161 145405445 -5378108 - MER6 DNA MER2_type -603 262 1 2111 128 0 28 chr11 145405647 145405967 -5377586 + AluSx SINE Alu 1 311 -1 194 0 39 0 chr11 145410598 145410624 -5372929 + (TAA)n Simple_repeat Simple_repeat 2 28 0 453 310 97 31 chr11 145411468 145411694 -5371859 - MIR SINE MIR -2 260 20 2262 113 0 3 chr11 145411705 145412016 -5371537 - AluSg SINE Alu 0 310 1 263 286 83 0 chr11 145412612 145412696 -5370857 + L1MC4 LINE L1 6613 6703 -1339 356 285 139 28 chr11 145413901 145414045 -5369508 - MIR SINE MIR -43 219 60 288 0 0 0 chr11 145414999 145415031 -5368522 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 559 289 32 6 chr11 145415111 145415267 -5368286 - MIR3 SINE MIR -15 193 34 283 266 115 0 chr11 145416847 145416960 -5366593 - L2 LINE L2 -1 3271 3146 907 149 0 15 chr11 145417072 145417206 -5366347 - FLAM_C SINE Alu 0 133 2 3555 117 0 46 chr11 145418251 145418796 -5364757 - MER1A DNA MER1_type -9 520 1 186 268 155 77 chr11 145419555 145419723 -5363830 - MIR3 SINE MIR -25 183 3 484 240 138 92 chr11 145421129 145421346 -5362207 - MIR SINE MIR -1 261 35 276 30 0 0 chr11 145421867 145421900 -5361653 - L1MA9 LINE L1 -4 6308 6276 423 38 0 0 chr11 145422078 145422131 -5361422 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 1745 165 59 17 chr11 145423123 145423261 -5360292 - L1MA9 LINE L1 -4 6308 6177 192 40 0 0 chr11 145423261 145423286 -5360267 + (TG)n Simple_repeat Simple_repeat 1 25 0 1745 165 59 17 chr11 145423286 145423505 -5360048 - L1MA9 LINE L1 -135 6177 5936 1573 206 72 11 chr11 145423511 145423946 -5359607 + MLT2B1 LTR ERVL 9 518 -2 750 223 42 6 chr11 145424129 145424295 -5359258 - MIR SINE MIR -69 193 22 441 0 0 0 chr11 145424669 145424718 -5358835 + (CA)n Simple_repeat Simple_repeat 2 50 0 348 328 181 36 chr11 145425669 145426056 -5357497 - L3 LINE CR1 -165 1412 970 3824 181 15 2 chr11 145426266 145427068 -5356485 - L1MA9 LINE L1 -14 6298 5391 183 80 0 0 chr11 145428169 145428194 -5355359 + (TG)n Simple_repeat Simple_repeat 1 25 0 258 32 0 0 chr11 145428380 145428411 -5355142 + (CA)n Simple_repeat Simple_repeat 1 31 0 227 268 0 14 chr11 145428568 145428639 -5354914 + GA-rich Low_complexity Low_complexity 3 72 0 249 83 0 0 chr11 145429762 145429798 -5353755 + (TG)n Simple_repeat Simple_repeat 1 36 0 376 339 141 38 chr11 145429842 145430733 -5352820 + L2 LINE L2 2078 3066 -206 11141 195 37 15 chr11 145430793 145431473 -5352080 - L1PA16 LINE L1 0 6869 6205 1598 160 7 75 chr11 145431473 145431779 -5351774 - AluJb SINE Alu -27 285 1 11141 195 37 15 chr11 145431779 145434696 -5348857 - L1PA16 LINE L1 -664 6205 3185 2822 83 11 8 chr11 145434696 145435051 -5348502 - L1PB1 LINE L1 -1 6150 5792 213 39 0 0 chr11 145435051 145435077 -5348476 + (TG)n Simple_repeat Simple_repeat 2 27 0 2822 83 11 8 chr11 145435077 145435095 -5348458 - L1PB1 LINE L1 -359 5792 5776 269 250 0 62 chr11 145435107 145435203 -5348350 - L1MC4 LINE L1 -1339 6703 6614 * 307 221 0 21 chr11 145435117 145435212 -5348341 + L1MC4 LINE L1 6614 6706 -1336 * 9311 181 24 15 chr11 145435200 145437785 -5345768 - L1P5 LINE L1 -360 5791 3185 17783 151 43 16 chr11 145437788 145440891 -5342662 - L1PA16 LINE L1 -3663 3186 1 369 0 0 0 chr11 145441573 145441614 -5341939 + (TG)n Simple_repeat Simple_repeat 2 42 0 180 0 0 0 chr11 145441637 145441657 -5341896 + (TGAA)n Simple_repeat Simple_repeat 2 21 0 379 293 152 18 chr11 145442224 145442388 -5341165 - MER5A DNA MER1_type 0 189 4 1838 92 4 4 chr11 145442971 145443231 -5340322 - L1P3 LINE L1 -5277 1184 925 5889 74 1 7 chr11 145443231 145443962 -5339591 + L1PA7 LINE L1 5426 6152 -2 192 77 0 0 chr11 145445229 145445255 -5338298 + (CA)n Simple_repeat Simple_repeat 1 26 0 195 42 0 0 chr11 145445632 145445656 -5337897 + (CACCC)n Simple_repeat Simple_repeat 4 27 0 389 288 185 11 chr11 145445968 145446152 -5337401 + MIR SINE MIR 6 221 -41 426 286 124 6 chr11 145448638 145448799 -5334754 + MIR3 SINE MIR 20 199 -9 1708 166 10 10 chr11 145449185 145449481 -5334072 - AluSx SINE Alu -16 296 1 300 261 23 11 chr11 145449651 145449739 -5333814 + MIR SINE MIR 48 136 -126 265 404 59 12 chr11 145453097 145453419 -5330134 + L2 LINE L2 2840 3176 -96 270 301 40 57 chr11 145453674 145453836 -5329717 - MIR SINE MIR -67 141 7 227 242 16 0 chr11 145454140 145454202 -5329351 + MIR3 SINE MIR 125 187 -21 433 196 10 10 chr11 145455123 145455220 -5328333 + MIR SINE MIR 166 262 0 352 291 0 39 chr11 145455223 145455350 -5328203 - L2 LINE L2 0 3313 3192 1578 162 107 6 chr11 145455705 145456010 -5327543 + MLT2A2 LTR ERVL 1 333 -149 834 86 0 0 chr11 145456013 145456118 -5327435 + AluSg/x SINE Alu 200 304 -6 974 166 13 8 chr11 145456153 145456361 -5327192 + MLT2A2 LTR ERVL 302 445 -8 182 250 208 25 chr11 145456658 145456778 -5326775 - L2 LINE L2 0 3313 3172 1994 129 0 10 chr11 145457038 145457333 -5326220 - AluSc SINE Alu -17 292 1 201 338 15 15 chr11 145457456 145457524 -5326029 + L2 LINE L2 3195 3262 -10 212 316 53 0 chr11 145457565 145457660 -5325893 - MIR SINE MIR -3 259 160 285 331 77 0 chr11 145457895 145458025 -5325528 + L2 LINE L2 3161 3300 -13 221 310 28 0 chr11 145458444 145458515 -5325038 - L2 LINE L2 0 3272 3200 679 261 162 40 chr11 145460041 145460466 -5323087 - L1ME4a LINE L1 -2 6119 5643 2336 101 3 0 chr11 145460726 145461023 -5322530 + AluSg SINE Alu 1 298 -12 303 270 54 40 chr11 145462650 145462798 -5320755 + MER5A DNA MER1_type 36 185 -4 347 351 0 0 chr11 145462910 145463021 -5320532 + MIR SINE MIR 36 146 -116 347 352 6 44 chr11 145463276 145463458 -5320095 - MIR SINE MIR 0 262 88 273 278 100 0 chr11 145463459 145463549 -5320004 - MIR SINE MIR -136 126 28 328 113 4 2 chr11 145463776 145464015 -5319538 + AluSg1 SINE Alu 1 297 -3 301 275 92 15 chr11 145464228 145464359 -5319194 - MIR3 SINE MIR -48 160 20 862 127 92 0 chr11 145465597 145465739 -5317814 + L1PB4 LINE L1 6002 6156 0 729 216 15 0 chr11 145465879 145466013 -5317540 - Tigger2 DNA MER2_type -4 2714 2579 598 71 0 0 chr11 145466105 145466190 -5317363 - Tigger2 DNA MER2_type -148 2570 2486 867 249 192 32 chr11 145467474 145467907 -5315646 - L2 LINE L2 0 3313 2812 192 225 0 0 chr11 145468394 145468434 -5315119 - L2 LINE L2 -48 3224 3185 1100 164 38 19 chr11 145468700 145468913 -5314640 + MER20 DNA MER1_type 1 217 -2 220 244 24 114 chr11 145469223 145469346 -5314207 - MIR SINE MIR -65 197 86 435 200 15 15 chr11 145469703 145469833 -5313720 + CT-rich Low_complexity Low_complexity 2 131 0 1027 239 133 28 chr11 145469857 145470247 -5313306 + MLT1J2 LTR MaLR 20 450 0 518 230 178 7 chr11 145471813 145471965 -5311588 - MER5A DNA MER1_type 0 189 12 243 161 18 18 chr11 145471983 145472039 -5311514 + MLT1J2 LTR MaLR 372 427 -23 757 179 0 15 chr11 145472395 145472529 -5311024 + FLAM_C SINE Alu 2 133 0 261 301 30 8 chr11 145473004 145473137 -5310416 + L2 LINE L2 2154 2289 -1025 188 159 0 23 chr11 145473186 145473230 -5310323 + GA-rich Low_complexity Low_complexity 1 43 0 411 21 0 0 chr11 145473536 145473584 -5309969 + (TTA)n Simple_repeat Simple_repeat 1 48 0 525 320 18 60 chr11 145474466 145474691 -5308862 - L2 LINE L2 -410 2904 2700 2163 103 3 3 chr11 145474691 145474982 -5308571 + AluSg SINE Alu 2 292 -18 525 320 18 60 chr11 145474982 145475137 -5308416 - L2 LINE L2 -614 2700 2540 429 239 6 63 chr11 145475316 145475475 -5308078 + MIR SINE MIR 74 223 -39 290 318 179 35 chr11 145476287 145476488 -5307065 + MIR SINE MIR 23 252 -10 1997 138 7 0 chr11 145477274 145477570 -5305983 + AluSx SINE Alu 1 298 -14 201 39 0 0 chr11 145477572 145477598 -5305955 + (TG)n Simple_repeat Simple_repeat 1 26 0 606 212 9 0 chr11 145479422 145479535 -5304018 + MER81 DNA DNA 1 114 0 2271 92 3 7 chr11 145479842 145480145 -5303408 - AluSp SINE Alu -11 302 1 2190 114 0 3 chr11 145480341 145480631 -5302922 + AluSx SINE Alu 3 291 -21 1129 209 84 202 chr11 145481096 145481186 -5302367 - L1MC4 LINE L1 0 8042 7943 282 29 0 0 chr11 145481186 145481221 -5302332 + (TG)n Simple_repeat Simple_repeat 2 36 0 1129 209 84 202 chr11 145481221 145482571 -5300982 - L1MC4 LINE L1 -99 7943 6772 637 289 168 32 chr11 145482596 145483001 -5300552 + L2 LINE L2 2251 2710 -604 1831 199 84 25 chr11 145483204 145483645 -5299908 + MLT1F LTR MaLR 30 496 -46 3178 276 88 33 chr11 145483655 145485029 -5298524 - L1MC4a LINE L1 -1105 6703 5254 2435 85 0 0 chr11 145485126 145485431 -5298122 - AluSq SINE Alu -8 305 1 325 284 21 14 chr11 145485606 145485747 -5297806 - L1MC4a LINE L1 -1120 5026 4885 204 97 0 0 chr11 145486115 145486146 -5297407 + (GA)n Simple_repeat Simple_repeat 1 31 0 326 293 73 0 chr11 145486207 145486357 -5297196 - MIR SINE MIR -49 213 53 219 224 0 41 chr11 145488019 145488068 -5295485 - L2 LINE L2 -10 3262 3216 299 269 160 46 chr11 145488083 145488258 -5295295 - MIR SINE MIR -11 251 57 425 234 22 44 chr11 145489827 145489997 -5293556 + MIR SINE MIR 52 212 -50 655 250 107 13 chr11 145491943 145492167 -5291386 + MIR SINE MIR 13 257 -5 25 0 0 0 chr11 145492173 145492198 -5291355 + AT_rich Low_complexity Low_complexity 1 25 0 875 252 41 0 chr11 145492841 145493078 -5290475 + MLT1G LTR MaLR 9 270 -285 793 323 20 34 chr11 145493141 145493491 -5290062 - L1MC/D LINE L1 -2009 5799 5455 189 179 0 26 chr11 145494082 145494121 -5289432 + MER5A DNA MER1_type 130 167 -22 1051 155 0 35 chr11 145494127 145494301 -5289252 - AluJb SINE Alu -31 281 114 721 232 60 0 chr11 145494304 145494472 -5289081 - MER5A DNA MER1_type -11 178 1 219 214 0 0 chr11 145494485 145494541 -5289012 + MER5A DNA MER1_type 28 83 -106 687 229 6 22 chr11 145494624 145494803 -5288750 - MER5B DNA MER1_type -2 176 1 238 325 151 16 chr11 145494921 145495047 -5288506 - L2 LINE L2 -8 3264 3122 261 247 31 52 chr11 145495203 145495300 -5288253 - L2 LINE L2 0 3272 3178 500 224 190 24 chr11 145495537 145495742 -5287811 + MLT1K LTR MaLR 344 582 -6 309 383 75 42 chr11 145496534 145496894 -5286659 + L2 LINE L2 2896 3267 -5 1537 272 84 23 chr11 145498257 145498826 -5284727 - L1ME3A LINE L1 -31 6139 5536 241 286 176 25 chr11 145498878 145498997 -5284556 - MIR SINE MIR -118 144 8 296 260 252 0 chr11 145499177 145499300 -5284253 + L2 LINE L2 2008 2161 -1153 531 299 19 37 chr11 145499320 145499687 -5283866 + MLT1I LTR MaLR 11 401 -8 1135 276 16 26 chr11 145499698 145500079 -5283474 + L2 LINE L2 2189 2565 -749 464 284 223 5 chr11 145501118 145501315 -5282238 - MIR SINE MIR 0 262 23 360 0 0 0 chr11 145501468 145501508 -5282045 + (CA)n Simple_repeat Simple_repeat 2 41 0 488 304 48 12 chr11 145502136 145502304 -5281249 - MIR3 SINE MIR -12 196 23 411 296 45 74 chr11 145502271 145502514 -5281039 + MIR SINE MIR 21 256 -6 * 21 36 0 0 chr11 145503276 145503304 -5280249 + AT_rich Low_complexity Low_complexity 1 28 0 755 330 39 11 chr11 145503575 145503939 -5279614 - L1ME3A LINE L1 -269 5901 5528 315 278 178 16 chr11 145504301 145504492 -5279061 + MIR SINE MIR 1 222 -40 1363 234 35 48 chr11 145504543 145504937 -5278616 - MLT1B LTR MaLR -1 389 1 1029 192 0 67 chr11 145505206 145505430 -5278123 + MER3 DNA MER1_type 1 209 0 1183 108 54 20 chr11 145506714 145506918 -5276635 - L1MA8 LINE L1 0 6291 6081 226 336 26 9 chr11 145507721 145507834 -5275719 + MIR SINE MIR 87 201 -61 1459 122 0 0 chr11 145507857 145508053 -5275500 + AluSq SINE Alu 1 196 -117 333 118 0 0 chr11 145508054 145508105 -5275448 + AluSq SINE Alu 252 302 0 212 388 23 8 chr11 145510103 145510232 -5273321 + MIR SINE MIR 18 148 -60 298 404 18 12 chr11 145510748 145510919 -5272634 - MIR3 SINE MIR -24 184 13 189 322 17 0 chr11 145510920 145510979 -5272574 - MIR3 SINE MIR -136 72 13 641 307 19 84 chr11 145511092 145511558 -5271995 - MLT1J LTR MaLR -75 436 1 228 306 132 53 chr11 145511720 145511985 -5271568 + L2 LINE L2 2995 3280 -33 264 254 17 0 chr11 145512443 145512502 -5271051 + LTR33 LTR ERVL 30 89 -432 336 302 84 33 chr11 145512528 145512859 -5270694 + LTR33 LTR ERVL 156 519 -2 519 147 26 0 chr11 145513389 145513505 -5270048 + CT-rich Low_complexity Low_complexity 1 119 0 352 320 33 33 chr11 145514776 145514898 -5268655 + L2 LINE L2 3146 3267 -5 217 324 120 9 chr11 145514957 145515065 -5268488 + L2 LINE L2 3143 3262 -10 1926 167 48 17 chr11 145516852 145517205 -5266348 + MLT1A1 LTR MaLR 1 364 -1 494 235 33 66 chr11 145517441 145517596 -5265957 + L1MC5 LINE L1 7722 7872 -89 774 226 73 6 chr11 145517596 145517773 -5265780 - MER5A DNA MER1_type 0 189 1 494 235 33 66 chr11 145517773 145517800 -5265753 + L1MC5 LINE L1 7872 7898 -63 195 345 36 116 chr11 145518398 145518864 -5264689 - L2 LINE L2 -1 3271 2843 1718 201 40 24 chr11 145518936 145519309 -5264244 + MLT1B LTR MaLR 4 382 -8 24 0 0 0 chr11 145519638 145519662 -5263891 + AT_rich Low_complexity Low_complexity 1 24 0 251 294 78 0 chr11 145520560 145520662 -5262891 - L2 LINE L2 -3 3310 3201 181 308 0 0 chr11 145521215 145521267 -5262286 - MIR3 SINE MIR -32 176 125 227 200 0 0 chr11 145521797 145521837 -5261716 - LTR11 LTR ERV -605 79 40 203 274 81 0 chr11 145524615 145524677 -5258876 + L2 LINE L2 3122 3188 -84 2124 117 0 0 chr11 145575515 145575797 -5207756 + AluSq SINE Alu 1 282 -31 375 288 16 0 chr11 145575901 145576026 -5207527 + MIR SINE MIR 73 199 -63 304 173 19 0 chr11 145576849 145576901 -5206652 - L2 LINE L2 -7 3265 3213 244 242 137 0 chr11 145577020 145577115 -5206438 - MIR SINE MIR -99 163 56 183 129 0 0 chr11 145577903 145577934 -5205619 + (A)n Simple_repeat Simple_repeat 1 31 0 336 349 32 16 chr11 145579078 145579204 -5204349 - MIR SINE MIR -116 146 19 446 280 113 55 chr11 145579411 145579979 -5203574 - L2 LINE L2 -8 3305 2700 244 188 29 0 chr11 145580115 145580184 -5203369 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 302 222 17 86 chr11 145580210 145580327 -5203226 - L1MC4a LINE L1 -1895 5913 5805 850 224 105 14 chr11 145580338 145580548 -5203005 + MIR SINE MIR 4 232 -30 815 304 133 11 chr11 145581163 145581621 -5201932 - L1MC4a LINE L1 -2013 5795 5282 590 273 87 0 chr11 145581624 145581796 -5201757 + MIR SINE MIR 9 195 -67 456 170 21 11 chr11 145581796 145581890 -5201663 + MER89 LTR ERV1 1 95 -464 295 293 13 0 chr11 145581898 145581973 -5201580 - MER89 LTR ERV1 -259 300 225 * 1412 178 112 6 chr11 145581967 145582281 -5201272 + MER89 LTR ERV1 213 559 0 193 344 33 22 chr11 145582400 145582490 -5201063 + L2 LINE L2 3179 3269 -44 406 285 77 65 chr11 145582862 145583108 -5200445 - MIR SINE MIR -12 250 2 435 300 25 72 chr11 145584690 145584927 -5198626 + MIR SINE MIR 31 256 -6 288 111 0 0 chr11 145584929 145584974 -5198579 + (CAT)n Simple_repeat Simple_repeat 3 47 0 186 352 91 23 chr11 145585246 145585422 -5198131 - L2 LINE L2 -219 3053 2866 365 309 55 50 chr11 145585926 145586107 -5197446 - MIR SINE MIR -16 246 65 209 345 218 0 chr11 145586305 145586392 -5197161 + L2 LINE L2 3167 3272 0 224 331 25 61 chr11 145586459 145586622 -5196931 + MIR SINE MIR 41 197 -65 213 39 0 0 chr11 145587273 145587299 -5196254 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 191 216 20 0 chr11 145587305 145587356 -5196197 - L2 LINE L2 0 3313 3262 490 298 73 19 chr11 145587451 145587656 -5195897 - MIR SINE MIR -30 232 17 400 225 232 0 chr11 145588143 145588281 -5195272 - MER5A DNA MER1_type 0 189 20 1751 140 45 17 chr11 145588900 145589192 -5194361 - AluSx SINE Alu -12 300 1 291 316 111 16 chr11 145590325 145590515 -5193038 - MIR SINE MIR -14 248 41 651 103 0 0 chr11 145590522 145590619 -5192934 + (TTCC)n Simple_repeat Simple_repeat 3 99 0 574 224 19 124 chr11 145590849 145591059 -5192494 + LTR33 LTR ERVL 330 517 -4 120 21 0 0 chr11 145591614 145591755 -5191798 + AT_rich Low_complexity Low_complexity 1 141 0 219 88 0 0 chr11 145592216 145592250 -5191303 + (GA)n Simple_repeat Simple_repeat 1 34 0 386 317 49 60 chr11 145592262 145592445 -5191108 + MIR3 SINE MIR 17 197 -11 23 0 0 0 chr11 145593621 145593644 -5189909 + AT_rich Low_complexity Low_complexity 1 23 0 252 149 0 0 chr11 145594381 145594428 -5189125 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 317 328 132 5 chr11 145594646 145594850 -5188703 - MIR SINE MIR -22 240 11 993 108 0 0 chr11 145595900 145596029 -5187524 + AluSp SINE Alu 2 130 -183 1067 171 40 83 chr11 145596651 145596879 -5186674 - MER20 DNA MER1_type 0 219 2 250 167 0 0 chr11 145597120 145597162 -5186391 + Alu SINE Alu 3 44 -258 24 77 0 0 chr11 145597162 145597214 -5186339 + AT_rich Low_complexity Low_complexity 1 52 0 1528 139 0 36 chr11 145597223 145597475 -5186078 + AluJo SINE Alu 64 306 -6 270 296 0 0 chr11 145597952 145598029 -5185524 + MIR SINE MIR 86 163 -45 450 357 37 25 chr11 145598159 145598400 -5185153 - MIR SINE MIR 0 262 19 231 268 24 37 chr11 145599972 145600054 -5183499 + (CATATA)n Simple_repeat Simple_repeat 6 86 0 206 220 17 0 chr11 145600072 145600131 -5183422 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 230 177 13 38 chr11 145600341 145600420 -5183133 + (TA)n Simple_repeat Simple_repeat 1 77 0 187 370 151 7 chr11 145601796 145601942 -5181611 + L2 LINE L2 3102 3268 -4 257 318 42 11 chr11 145606606 145606762 -5176791 - MIR SINE MIR -77 131 21 281 237 0 17 chr11 145607290 145607349 -5176204 - L2 LINE L2 -209 3063 3006 414 0 0 0 chr11 145607388 145607434 -5176119 + (TG)n Simple_repeat Simple_repeat 1 46 0 234 333 61 35 chr11 145607434 145607539 -5176014 - L2 LINE L2 -26 3246 3136 217 302 107 27 chr11 145608798 145608947 -5174606 + L2 LINE L2 2941 3101 -171 214 359 42 69 chr11 145608950 145609167 -5174386 + L2 LINE L2 3057 3267 -5 252 300 50 30 chr11 145609381 145609481 -5174072 + L2 LINE L2 3211 3312 -1 604 291 0 24 chr11 145610161 145610326 -5173227 + MIR3 SINE MIR 18 178 -30 303 281 158 12 chr11 145611184 145611348 -5172205 - L2 LINE L2 -4 3309 3122 2340 90 0 0 chr11 145611774 145612063 -5171490 + AluSc SINE Alu 1 289 -20 279 0 0 0 chr11 145612472 145612503 -5171050 + (TAA)n Simple_repeat Simple_repeat 2 32 0 449 304 64 0 chr11 145612589 145612714 -5170839 - MIR SINE MIR -74 188 56 25 0 0 0 chr11 145614352 145614377 -5169176 + AT_rich Low_complexity Low_complexity 1 25 0 182 339 0 0 chr11 145614577 145614639 -5168914 - MIR SINE MIR -89 119 58 242 316 29 72 chr11 145614764 145614903 -5168650 - MIR3 SINE MIR -32 176 44 1956 146 0 11 chr11 145615331 145615641 -5167912 + AluSx SINE Alu 1 307 0 387 266 89 25 chr11 145616950 145617108 -5166445 - MIR SINE MIR -44 218 51 764 176 26 7 chr11 145617339 145617492 -5166061 - L1M LINE L1 -741 5427 5272 1264 140 15 0 chr11 145617507 145617707 -5165846 + L1MB1 LINE L1 5961 6163 -5 2358 95 0 7 chr11 145618777 145619083 -5164470 - AluY SINE Alu -7 304 1 401 278 88 50 chr11 145619540 145619860 -5163693 + L2 LINE L2 2934 3265 -48 252 241 86 0 chr11 145620805 145620863 -5162690 - L2 LINE L2 -3 3269 3207 210 213 0 21 chr11 145620869 145620916 -5162637 + (TAA)n Simple_repeat Simple_repeat 2 47 0 303 270 67 11 chr11 145620922 145621011 -5162542 + L2 LINE L2 3204 3297 -16 469 283 106 25 chr11 145621012 145621210 -5162343 - MIR SINE MIR 0 262 49 1846 138 10 0 chr11 145621256 145621545 -5162008 + L1MA5 LINE L1 6008 6299 -1 30 45 0 0 chr11 145621546 145621590 -5161963 + AT_rich Low_complexity Low_complexity 1 44 0 458 203 72 29 chr11 145622002 145622140 -5161413 - L1ME3A LINE L1 -19 6151 6008 1471 236 32 41 chr11 145622143 145622554 -5160999 - MLT1C LTR MaLR -8 459 53 1394 237 79 25 chr11 145622574 145623005 -5160548 - L1ME3A LINE L1 -159 6011 5558 385 171 29 0 chr11 145623006 145623076 -5160477 - L2 LINE L2 -561 2753 2682 1880 158 3 23 chr11 145623476 145623779 -5159774 - AluJb SINE Alu -15 297 1 566 277 79 30 chr11 145624383 145624630 -5158923 - MIR SINE MIR 0 262 3 2268 92 0 22 chr11 145625698 145626014 -5157539 - AluY SINE Alu -2 309 1 244 284 14 0 chr11 145626037 145626111 -5157442 - MIR SINE MIR -31 231 157 1427 287 51 29 chr11 145626255 145626767 -5156786 + MER115 DNA AcHobo 171 693 0 264 339 0 0 chr11 145626825 145626884 -5156669 - MIR SINE MIR -181 81 23 349 249 34 124 chr11 145627152 145627233 -5156320 + L1MC4 LINE L1 7459 7546 -496 2322 245 53 39 chr11 145627233 145627808 -5155745 + MLT1E1 LTR MaLR 1 588 -66 2030 94 0 75 chr11 145627808 145628154 -5155399 - AluSq SINE Alu 0 323 1 2322 245 53 39 chr11 145628154 145628222 -5155331 + MLT1E1 LTR MaLR 588 654 0 349 249 34 124 chr11 145628222 145628349 -5155204 + L1MC4 LINE L1 7546 7648 -394 341 102 17 0 chr11 145629143 145629202 -5154351 + (CA)n Simple_repeat Simple_repeat 1 60 0 411 335 73 23 chr11 145629591 145629809 -5153744 - MIR SINE MIR -11 251 23 312 243 37 84 chr11 145630583 145630690 -5152863 - L2 LINE L2 -21 3292 3191 429 20 0 0 chr11 145630867 145630917 -5152636 + (CA)n Simple_repeat Simple_repeat 2 51 0 486 272 157 21 chr11 145631364 145631599 -5151954 - L2 LINE L2 -5 3308 3042 37 81 0 0 chr11 145632540 145632626 -5150927 + AT_rich Low_complexity Low_complexity 1 86 0 782 144 0 8 chr11 145633487 145633605 -5149948 - MSTA LTR MaLR 0 428 312 25 51 0 0 chr11 145633635 145633674 -5149879 + AT_rich Low_complexity Low_complexity 1 39 0 1704 143 51 14 chr11 145633756 145634050 -5149503 - MSTA LTR MaLR -123 305 1 328 326 27 0 chr11 145637554 145637675 -5145878 - MIR SINE MIR -66 142 31 530 281 147 22 chr11 145638062 145638286 -5145267 - MIR SINE MIR -10 252 1 207 344 26 32 chr11 145638387 145638541 -5145012 - L2 LINE L2 -446 2868 2716 750 329 21 0 chr11 145640423 145640666 -5142887 + MIR SINE MIR 1 248 -14 203 158 0 0 chr11 145640676 145640714 -5142839 + CT-rich Low_complexity Low_complexity 3 40 0 497 143 0 11 chr11 145640718 145640809 -5142744 + (TCC)n Simple_repeat Simple_repeat 2 91 0 1266 90 0 0 chr11 145640809 145640987 -5142566 + (TTC)n Simple_repeat Simple_repeat 1 178 0 23 54 0 0 chr11 145641515 145641552 -5142001 + AT_rich Low_complexity Low_complexity 1 37 0 262 328 22 17 chr11 145641808 145641988 -5141565 - L1MC4 LINE L1 -2 8040 7860 1001 248 136 84 chr11 145641994 145642554 -5140999 - MLT1G LTR MaLR -1 589 1 22 0 0 0 chr11 145642653 145642675 -5140878 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 145643054 145643076 -5140477 + AT_rich Low_complexity Low_complexity 1 22 0 424 258 11 90 chr11 145643326 145643504 -5140049 - L2 LINE L2 0 3313 3150 2128 92 4 0 chr11 145643665 145643936 -5139617 + AluSc SINE Alu 23 294 -15 1259 294 54 14 chr11 145645679 145646121 -5137432 - L2 LINE L2 -3 3310 2851 2169 253 57 61 chr11 145646779 145647161 -5136392 + L2 LINE L2 2246 2628 -685 2010 92 32 21 chr11 145647161 145647443 -5136110 - AluSc SINE Alu -14 295 11 2169 253 57 61 chr11 145647443 145648045 -5135508 + L2 LINE L2 2628 3232 -81 199 191 24 0 chr11 145648166 145648208 -5135345 - L2 LINE L2 -1904 1410 1368 410 224 122 19 chr11 145648462 145648569 -5134984 + MLT1D LTR MaLR 1 118 -387 9665 18 0 0 chr11 145648570 145650475 -5133078 - L1PA2 LINE L1 0 6155 4251 585 298 58 33 chr11 145650473 145650952 -5132601 + L1M2 LINE L1 993 1688 -5161 * 229 194 0 0 chr11 145650953 145651015 -5132538 + AluJ/FLAM SINE Alu 1 62 -240 1479 142 55 45 chr11 145651382 145651691 -5131862 - THE1C LTR MaLR -63 312 1 1628 107 12 12 chr11 145651691 145651943 -5131610 - THE1C-int LTR MaLR 0 1580 1329 897 71 20 7 chr11 145651939 145652096 -5131457 - THE1C-int LTR MaLR -1424 156 41 * 2498 179 19 18 chr11 145652104 145652669 -5130884 - THE1-int LTR MaLR -262 1318 753 216 190 0 76 chr11 145652786 145652865 -5130688 + (GGGTG)n Simple_repeat Simple_repeat 2 74 0 231 268 24 37 chr11 145654435 145654598 -5128955 + (CATATA)n Simple_repeat Simple_repeat 1 161 0 1548 123 79 31 chr11 145655044 145655336 -5128217 + AluSc SINE Alu 4 309 0 4320 230 45 29 chr11 145655339 145657976 -5125577 + L1M2 LINE L1 1659 4340 -2508 5576 229 72 51 chr11 145658084 145661561 -5121992 + L1PB4 LINE L1 2595 6146 -10 221 410 29 0 chr11 145661838 145661977 -5121576 - L2 LINE L2 -2456 858 716 36 40 0 0 chr11 145662531 145662581 -5120972 + AT_rich Low_complexity Low_complexity 1 50 0 357 198 0 0 chr11 145662843 145662929 -5120624 + CT-rich Low_complexity Low_complexity 2 87 0 2087 115 40 67 chr11 145662954 145663247 -5120306 + THE1B LTR MaLR 1 283 -81 2450 58 0 19 chr11 145663247 145663556 -5119997 - AluY SINE Alu -1 310 8 2087 115 40 67 chr11 145663556 145663636 -5119917 + THE1B LTR MaLR 283 364 0 11434 98 7 13 chr11 145663636 145663823 -5119730 + THE1B-int LTR MaLR 1 188 -1392 1783 178 3 3 chr11 145663823 145664126 -5119427 + AluSx SINE Alu 1 303 -9 11434 98 7 13 chr11 145664126 145665527 -5118026 + THE1B-int LTR MaLR 188 1580 0 2163 127 39 30 chr11 145665527 145665888 -5117665 + THE1B LTR MaLR 1 364 0 319 367 9 9 chr11 145667590 145667699 -5115854 + MIR SINE MIR 6 114 -148 2209 120 11 6 chr11 145667732 145668081 -5115472 + L1PB1 LINE L1 5801 6151 0 302 225 14 0 chr11 145668466 145668537 -5115016 - MIR SINE MIR -128 134 63 199 302 58 12 chr11 145669341 145669427 -5114126 + MIR SINE MIR 5 94 -168 233 145 32 65 chr11 145669943 145670005 -5113548 + L1MC4 LINE L1 6645 6704 -1338 297 0 0 0 chr11 145670615 145670648 -5112905 + (TG)n Simple_repeat Simple_repeat 2 34 0 432 290 43 19 chr11 145671000 145671162 -5112391 - LTR16C LTR ERVL 0 491 326 366 261 34 0 chr11 145671967 145672055 -5111498 + L2 LINE L2 3223 3313 0 366 298 111 53 chr11 145672160 145672654 -5110899 + L1M4 LINE L1 2647 3169 -2977 395 319 35 0 chr11 145673131 145673275 -5110278 + L1M2 LINE L1 4386 4534 -2314 556 62 31 47 chr11 145673391 145673519 -5110034 + (TTTC)n Simple_repeat Simple_repeat 4 129 0 336 188 0 0 chr11 145673516 145673585 -5109968 + C-rich Low_complexity Low_complexity 1 69 0 * 222 247 165 24 chr11 145674360 145674445 -5109108 + L3 LINE CR1 467 563 -1014 235 330 141 22 chr11 145674464 145674649 -5108904 + MIR SINE MIR 20 226 -36 476 301 226 36 chr11 145674705 145675369 -5108184 + L3 LINE CR1 583 1372 -205 30 0 0 0 chr11 145675754 145675784 -5107769 + AT_rich Low_complexity Low_complexity 1 30 0 2321 66 21 0 chr11 145677905 145678194 -5105359 + AluY SINE Alu 1 295 -16 2060 241 108 56 chr11 145680635 145681437 -5102116 - L1ME1 LINE L1 -23 6143 5300 606 111 30 0 chr11 145681444 145681543 -5102010 - L1 LINE L1 -1369 4777 4676 * 3371 174 58 3 chr11 145681521 145682178 -5101375 - L1 LINE L1 -1992 4154 3462 1954 264 55 56 chr11 145682200 145683334 -5100219 - L1MDa LINE L1 -4407 2133 1002 259 363 0 9 chr11 145684172 145684285 -5099268 - L1MDa LINE L1 -6408 132 21 243 0 0 0 chr11 145684397 145684424 -5099129 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2647 90 6 3 chr11 145684623 145684977 -5098576 - THE1A LTR MaLR 0 355 1 188 388 51 0 chr11 145685846 145685944 -5097609 + L3 LINE CR1 1466 1568 -9 191 388 24 0 chr11 145685981 145686066 -5097487 + L3 LINE CR1 1245 1331 -246 26 0 0 0 chr11 145686077 145686103 -5097450 + AT_rich Low_complexity Low_complexity 1 26 0 1891 138 48 38 chr11 145686282 145686653 -5096900 - THE1C LTR MaLR 0 375 1 9177 97 29 121 chr11 145686653 145688393 -5095160 - THE1B-int LTR MaLR 0 1580 1 2656 104 3 6 chr11 145688393 145688758 -5094795 - THE1B LTR MaLR 0 364 1 499 184 65 33 chr11 145688827 145688984 -5094569 - L1MC/D LINE L1 -344 5818 5662 1794 183 22 35 chr11 145688998 145689364 -5094189 - MLT1A1 LTR MaLR -2 363 3 280 290 36 79 chr11 145689374 145689677 -5093876 - L1MC/D LINE L1 -577 5585 5296 252 281 50 8 chr11 145689720 145689841 -5093712 - L1MC/D LINE L1 -920 5226 5101 2786 19 0 0 chr11 145689898 145690208 -5093345 + AluYb8 SINE Alu 1 310 -8 1019 294 74 16 chr11 145690213 145690764 -5092789 - L1MC/D LINE L1 -1137 5009 4427 1959 145 51 9 chr11 145690765 145691097 -5092456 + MER7A DNA MER2_type 2 345 -1 430 318 41 25 chr11 145691178 145691734 -5091819 + L1M4 LINE L1 2269 2833 -3313 826 309 59 7 chr11 145691760 145692048 -5091505 + L1ME1 LINE L1 37 339 -6057 * 2944 242 69 32 chr11 145692046 145693031 -5090522 + L1ME1 LINE L1 1297 2323 -3892 2582 144 26 2 chr11 145693031 145693455 -5090098 + Tigger2a DNA MER2_type 1 434 0 2944 242 69 32 chr11 145693455 145693955 -5089598 + L1ME1 LINE L1 2323 2803 -3412 654 275 115 20 chr11 145693962 145694162 -5089391 + MER58A DNA MER1_type 6 224 0 2016 227 75 30 chr11 145694186 145694659 -5088894 + L1ME1 LINE L1 5170 5620 -615 2751 136 7 7 chr11 145694659 145695087 -5088466 + MSTA LTR MaLR 1 428 0 2016 227 75 30 chr11 145695087 145695535 -5088018 + L1ME1 LINE L1 5620 6127 -108 21 57 0 0 chr11 145696126 145696161 -5087392 + AT_rich Low_complexity Low_complexity 1 35 0 30 59 0 0 chr11 145696325 145696376 -5087177 + AT_rich Low_complexity Low_complexity 1 51 0 276 277 50 50 chr11 145696889 145697008 -5086545 + L2 LINE L2 3158 3276 -37 771 162 0 29 chr11 145697544 145697680 -5085873 - MLT1F1 LTR MaLR -435 132 1 275 248 43 106 chr11 145697715 145697997 -5085556 + HAL1 LINE L1 997 1260 -1247 207 198 12 37 chr11 145698016 145698097 -5085456 + GA-rich Low_complexity Low_complexity 2 80 0 311 315 67 18 chr11 145698129 145698294 -5085259 + HAL1 LINE L1 1502 1674 -833 2039 173 3 3 chr11 145698661 145699026 -5084527 + MER47A DNA MER2_type 1 365 -1 262 231 11 33 chr11 145699674 145699765 -5083788 - L1MEd LINE L1 -5060 1059 971 455 239 37 122 chr11 145699972 145700327 -5083226 + L1MEc LINE L1 1972 2302 -4094 348 255 34 43 chr11 145700387 145700595 -5082958 + L1MEc LINE L1 2273 2478 -3737 198 0 0 0 chr11 145700640 145700662 -5082891 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 2179 62 0 89 chr11 145700771 145701107 -5082446 + AluY SINE Alu 1 306 -5 4225 177 52 52 chr11 145701424 145701567 -5081986 - L1MD2 LINE L1 -3 6356 6214 402 115 0 0 chr11 145701567 145701628 -5081925 + (TG)n Simple_repeat Simple_repeat 2 62 0 4225 177 52 52 chr11 145701628 145701641 -5081912 - L1MD2 LINE L1 -145 6214 6202 2206 107 0 17 chr11 145701641 145701940 -5081613 - AluSx SINE Alu -18 294 1 4225 177 52 52 chr11 145701940 145702096 -5081457 - L1MD2 LINE L1 -157 6202 6047 1195 260 27 19 chr11 145702096 145702465 -5081088 - MLT1A2 LTR MaLR -2 372 1 4225 177 52 52 chr11 145702465 145703530 -5080023 - L1MD2 LINE L1 -312 6047 4978 245 323 65 39 chr11 145703878 145704033 -5079520 + L2 LINE L2 2874 3032 -240 2528 59 0 3 chr11 145704186 145704493 -5079060 - AluY SINE Alu -5 306 1 216 0 0 0 chr11 145704501 145704525 -5079028 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 206 255 39 0 chr11 145705375 145705426 -5078127 - MIR SINE MIR -95 167 115 330 320 183 0 chr11 145706573 145706726 -5076827 + MER5A DNA MER1_type 9 189 0 205 234 0 0 chr11 145706727 145706774 -5076779 - MIR3 SINE MIR -49 159 113 233 330 34 59 chr11 145707513 145707631 -5075922 - L2 LINE L2 -16 3297 3183 239 366 104 35 chr11 145707808 145708232 -5075321 - L2 LINE L2 -221 3051 2597 1549 106 5 9 chr11 145709288 145709506 -5074047 + AluSc SINE Alu 84 300 -9 336 309 72 36 chr11 145709653 145709847 -5073706 + MIR SINE MIR 9 209 -53 27 0 0 0 chr11 145709966 145709993 -5073560 + AT_rich Low_complexity Low_complexity 1 27 0 2192 224 99 56 chr11 145710011 145710690 -5072863 - L1MD2 LINE L1 -230 6129 5407 2071 104 0 24 chr11 145710690 145711006 -5072547 - AluSg SINE Alu 0 309 1 2192 224 99 56 chr11 145711006 145711132 -5072421 - L1MD2 LINE L1 -952 5407 5288 695 269 89 8 chr11 145711146 145711506 -5072047 - L1MD2 LINE L1 -1573 4573 4185 246 222 16 16 chr11 145713462 145713525 -5070028 + (TG)n Simple_repeat Simple_repeat 2 64 0 21 36 0 0 chr11 145715004 145715032 -5068521 + AT_rich Low_complexity Low_complexity 1 28 0 253 328 0 0 chr11 145715218 145715279 -5068274 + MER5A DNA MER1_type 9 69 -120 732 230 20 0 chr11 145715296 145715444 -5068109 + MER45A DNA AcHobo 19 169 -9 184 222 44 0 chr11 145715450 145715495 -5068058 + MER5A DNA MER1_type 66 112 -77 1298 276 59 49 chr11 145716048 145716661 -5066892 + MER21B LTR ERV1 96 714 -149 184 227 45 0 chr11 145716712 145716756 -5066797 + L3b LINE CR1 1272 1317 -266 23 33 0 0 chr11 145717524 145717554 -5065999 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr11 145717584 145717605 -5065948 + AT_rich Low_complexity Low_complexity 1 21 0 1242 173 0 107 chr11 145717621 145717893 -5065660 + AluJo SINE Alu 1 243 -69 628 327 110 24 chr11 145717952 145718497 -5065056 - L1ME4a LINE L1 -222 5899 5308 198 191 0 0 chr11 145719141 145719183 -5064370 + CT-rich Low_complexity Low_complexity 3 44 0 343 279 99 42 chr11 145719431 145719637 -5063916 - L1ME3A LINE L1 -189 6042 5826 1636 167 28 21 chr11 145719767 145720081 -5063472 - AluJb SINE Alu 0 316 1 363 272 46 18 chr11 145720111 145720406 -5063147 - L1ME3A LINE L1 -683 5556 5257 2919 9 0 0 chr11 145720445 145720763 -5062790 + AluYb8 SINE Alu 1 318 0 725 301 108 42 chr11 145720796 145723292 -5060261 - L1ME3A LINE L1 -1165 5050 2371 1711 150 4 22 chr11 145723292 145723599 -5059954 - AluJo SINE Alu 0 317 16 725 301 108 42 chr11 145723599 145723712 -5059841 - L1ME3A LINE L1 -3844 2371 2267 723 291 79 40 chr11 145723705 145724671 -5058882 - L1ME4a LINE L1 -1722 4424 3422 * 1115 246 103 27 chr11 145725144 145725738 -5057815 - L1ME4a LINE L1 -2833 3313 2675 248 280 70 11 chr11 145725743 145725929 -5057624 - L1ME3A LINE L1 -4099 2297 2101 389 295 27 70 chr11 145726917 145727109 -5056444 - L1ME3A LINE L1 -5317 888 708 2486 67 3 0 chr11 145727109 145727407 -5056146 - AluSp SINE Alu -14 299 1 389 295 27 70 chr11 145727407 145727472 -5056081 - L1ME3A LINE L1 -5497 708 642 967 252 79 99 chr11 145727986 145728784 -5054769 - L1MC5 LINE L1 -535 7426 6645 41003 34 21 1 chr11 145729784 145735847 -5047706 + L1PA3 LINE L1 1 6186 0 180 97 0 0 chr11 145735997 145736028 -5047525 + (A)n Simple_repeat Simple_repeat 1 31 0 277 241 131 44 chr11 145736593 145736730 -5046823 + MIR SINE MIR 37 185 -77 4343 142 20 4 chr11 145736960 145737666 -5045887 - LTR62 LTR ERVK -2 717 1 352 310 160 5 chr11 145738216 145738429 -5045124 + L2 LINE L2 1839 2084 -1230 218 363 89 13 chr11 145738639 145738876 -5044677 + L2 LINE L2 1800 2054 -1260 227 274 0 60 chr11 145738879 145738963 -5044590 + L2 LINE L2 882 960 -2354 1869 308 63 16 chr11 145738982 145739317 -5044236 - HAL1 LINE L1 -1286 1221 903 2292 123 8 3 chr11 145739317 145739675 -5043878 + MER46B DNA MER2_type 2 236 0 1869 308 63 16 chr11 145739675 145740495 -5043058 - HAL1 LINE L1 -1604 903 11 559 301 80 31 chr11 145741701 145742089 -5041464 + L2 LINE L2 1816 2222 -1092 557 99 62 0 chr11 145742089 145742250 -5041303 + (TA)n Simple_repeat Simple_repeat 2 172 0 1169 292 28 23 chr11 145742578 145743013 -5040540 - LTR16A LTR ERVL -13 437 1 410 255 120 58 chr11 145743021 145743280 -5040273 + L2 LINE L2 2607 2881 -433 273 357 35 35 chr11 145743317 145743460 -5040093 + L2 LINE L2 2916 3058 -214 194 347 32 82 chr11 145743672 145743891 -5039662 + L2 LINE L2 2979 3186 -86 331 333 53 6 chr11 145744146 145744317 -5039236 + MIR3 SINE MIR 9 187 -21 24 53 0 0 chr11 145744845 145744883 -5038670 + AT_rich Low_complexity Low_complexity 1 38 0 205 349 24 0 chr11 145744985 145745068 -5038485 - MIR SINE MIR -67 141 57 547 51 31 20 chr11 145745580 145745678 -5037875 + (TCTA)n Simple_repeat Simple_repeat 2 100 0 207 262 16 16 chr11 145746780 145746841 -5036712 + L2 LINE L2 3211 3271 -1 2256 167 12 48 chr11 145746987 145747467 -5036086 + MLT2B2 LTR ERVL 53 515 0 288 301 117 0 chr11 145747569 145747672 -5035881 - L2 LINE L2 -19 3253 3139 514 176 0 84 chr11 145747859 145747990 -5035563 + Tigger1 DNA MER2_type 2299 2418 0 1566 155 52 0 chr11 145748709 145748961 -5034592 + AluJb SINE Alu 1 265 -47 406 228 145 41 chr11 145750158 145750303 -5033250 + MER5B DNA MER1_type 3 162 -16 2149 99 0 3 chr11 145750793 145751076 -5032477 + AluSc SINE Alu 1 282 -27 1252 100 0 0 chr11 145750916 145751076 -5032477 + AluSg/x SINE Alu 126 315 0 231 0 33 0 chr11 145751076 145751106 -5032447 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1215 243 62 65 chr11 145753828 145754347 -5029206 + MLT1G1 LTR MaLR 11 527 -68 217 279 23 101 chr11 145755219 145755348 -5028205 - L3b LINE CR1 -219 1364 1246 216 97 0 0 chr11 145756583 145756614 -5026939 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 1560 324 144 23 chr11 145756657 145757942 -5025611 - L2 LINE L2 -65 3248 1823 351 329 7 7 chr11 145758040 145758183 -5025370 + MIR SINE MIR 117 259 -3 2057 123 7 3 chr11 145758834 145759134 -5024419 - AluSx SINE Alu -2 310 10 382 309 139 0 chr11 145759492 145759657 -5023896 + MIR SINE MIR 31 218 -44 224 270 40 27 chr11 145760845 145760919 -5022634 - L2 LINE L2 -8 3264 3190 2239 135 5 42 chr11 145760946 145761324 -5022229 + THE1B LTR MaLR 1 364 0 200 357 116 0 chr11 145761611 145761740 -5021813 + MIR3 SINE MIR 30 173 -35 2103 110 7 13 chr11 145761845 145762146 -5021407 - AluSc SINE Alu -10 299 1 4405 84 0 151 chr11 145762982 145763792 -5019761 + LTR12 LTR ERV1 1 688 0 436 301 35 7 chr11 145764863 145765017 -5018536 - MIR SINE MIR -66 142 35 2043 141 0 0 chr11 145765963 145766253 -5017300 - AluSx SINE Alu -22 290 1 190 375 0 0 chr11 145766271 145766335 -5017218 + L2 LINE L2 3249 3312 -1 371 307 45 38 chr11 145767152 145767387 -5016166 + MIR SINE MIR 17 252 -10 191 339 34 0 chr11 145768939 145768998 -5014555 + L2 LINE L2 3211 3271 -1 751 205 105 11 chr11 145769673 145769733 -5013820 - MER3 DNA MER1_type -1 208 155 207 0 0 0 chr11 145769733 145769756 -5013797 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 751 205 105 11 chr11 145769756 145769885 -5013668 - MER3 DNA MER1_type -54 155 1 262 295 0 13 chr11 145770406 145770484 -5013069 + CT-rich Low_complexity Low_complexity 2 78 0 310 253 111 20 chr11 145770508 145770607 -5012946 - L2 LINE L2 -46 3226 3119 279 93 0 0 chr11 145771512 145771555 -5011998 + (TG)n Simple_repeat Simple_repeat 1 43 0 191 281 94 0 chr11 145772033 145772097 -5011456 - L2 LINE L2 -34 3238 3169 845 140 0 182 chr11 145772545 145772781 -5010772 - 7SK RNA RNA 0 193 1 243 0 0 0 chr11 145772941 145772968 -5010585 + (TC)n Simple_repeat Simple_repeat 1 27 0 378 210 10 10 chr11 145773083 145773183 -5010370 - L1M4 LINE L1 -1476 5481 5382 570 187 0 0 chr11 145773195 145773286 -5010267 - AluJb SINE Alu -26 286 196 2103 254 43 20 chr11 145773288 145774047 -5009506 - L1M4 LINE L1 -1570 5387 4611 217 315 22 34 chr11 145774048 145774137 -5009416 + L2 LINE L2 1890 1977 -1337 754 230 33 46 chr11 145774163 145774301 -5009252 - L1M4 LINE L1 -2722 4235 4097 737 127 31 188 chr11 145774301 145774530 -5009023 + 7SK RNA RNA 1 193 0 754 230 33 46 chr11 145774530 145774782 -5008771 - L1M4 LINE L1 -2860 4097 3850 27 29 0 0 chr11 145774849 145774883 -5008670 + AT_rich Low_complexity Low_complexity 1 34 0 21 57 0 0 chr11 145775045 145775080 -5008473 + AT_rich Low_complexity Low_complexity 1 35 0 6119 236 67 22 chr11 145775153 145775503 -5008050 - L1M4 LINE L1 -4633 2326 1993 2244 113 0 7 chr11 145775503 145775803 -5007750 - AluSg SINE Alu -12 298 1 6119 236 67 22 chr11 145775803 145777672 -5005881 - L1M4 LINE L1 -4966 1993 20 5882 171 32 156 chr11 145777682 145779653 -5003900 - MER52A LTR ERV1 -29 1726 1 240 277 10 0 chr11 145779726 145779827 -5003726 - MER113 DNA MER1_type? -300 221 120 331 368 93 24 chr11 145780006 145780253 -5003300 + L1MC4 LINE L1 6765 7028 -1014 26 0 0 0 chr11 145781433 145781459 -5002094 + AT_rich Low_complexity Low_complexity 1 26 0 404 219 118 0 chr11 145781700 145781819 -5001734 + MIR SINE MIR 40 172 -90 5603 56 1 0 chr11 145782330 145783031 -5000522 - L1PA5 LINE L1 -2 6152 5451 482 330 78 62 chr11 145783300 145783352 -5000201 - L2 LINE L2 -25 3247 3197 240 35 0 0 chr11 145783352 145783381 -5000172 + (TG)n Simple_repeat Simple_repeat 1 29 0 482 330 78 62 chr11 145783381 145783728 -4999825 - L2 LINE L2 -75 3197 2842 24 0 0 0 chr11 145783779 145783803 -4999750 + AT_rich Low_complexity Low_complexity 1 24 0 14534 159 16 14 chr11 145783803 145789558 -4993995 - L1MA2 LINE L1 -1 7722 1960 3990 186 65 7 chr11 145789559 145790318 -4993235 - L1MA2 LINE L1 -5658 1907 1105 456 177 15 46 chr11 145790314 145790444 -4993109 - L1MA2 LINE L1 -7430 135 10 * 273 339 17 56 chr11 145790560 145790740 -4992813 - L2 LINE L2 -668 2646 2474 213 94 19 75 chr11 145790767 145790820 -4992733 + (TTTTTG)n Simple_repeat Simple_repeat 5 54 0 1336 269 21 62 chr11 145790888 145791446 -4992107 - L2 LINE L2 -17 3296 2764 855 325 106 52 chr11 145791460 145791610 -4991943 - L2 LINE L2 -972 2342 2201 1061 220 23 0 chr11 145791610 145791828 -4991725 + MER58A DNA MER1_type 1 223 -1 855 325 106 52 chr11 145791828 145792611 -4990942 - L2 LINE L2 -1113 2201 1359 282 314 85 43 chr11 145793750 145793938 -4989615 + L2 LINE L2 2562 2757 -557 23 68 0 0 chr11 145795622 145795666 -4987887 + AT_rich Low_complexity Low_complexity 1 44 0 200 365 87 26 chr11 145796159 145796274 -4987279 - MIR SINE MIR -56 152 31 270 0 0 0 chr11 145796285 145796315 -4987238 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 474 287 13 60 chr11 145796750 145796870 -4986683 - MER5A DNA MER1_type -9 180 67 4991 124 31 7 chr11 145796870 145797914 -4985639 - L1PA16 LINE L1 -9 6157 5110 474 287 13 60 chr11 145797914 145797943 -4985610 - MER5A DNA MER1_type -122 67 38 432 321 27 16 chr11 145798089 145798273 -4985280 + MIR SINE MIR 21 206 -56 257 267 37 15 chr11 145799304 145799439 -4984114 + LTR67 LTR ERVL 418 555 -2 2253 119 3 0 chr11 145799488 145799791 -4983762 - AluSx SINE Alu -8 304 1 332 323 99 50 chr11 145799828 145800402 -4983151 + L2 LINE L2 2367 3068 -245 518 261 15 0 chr11 145800491 145800621 -4982932 - MER94 DNA DNA 0 134 3 306 50 0 0 chr11 145800982 145801022 -4982531 + (TC)n Simple_repeat Simple_repeat 1 40 0 371 269 157 8 chr11 145801232 145801366 -4982187 + MIR SINE MIR 36 189 -73 189 271 34 0 chr11 145801439 145801498 -4982055 + MIR SINE MIR 201 261 -1 239 310 0 0 chr11 145801672 145801743 -4981810 + CT-rich Low_complexity Low_complexity 4 74 0 2078 155 0 0 chr11 145801787 145802091 -4981462 + AluSg SINE Alu 1 304 -6 6796 132 52 9 chr11 145802092 145803271 -4980282 - Tigger3b DNA MER2_type -1 1230 2 913 274 104 61 chr11 145803425 145803983 -4979570 + MLT1E LTR MaLR 7 588 -5 239 264 19 0 chr11 145804870 145804923 -4978630 - L2 LINE L2 -9 3304 3251 224 200 17 0 chr11 145805285 145805345 -4978208 + CT-rich Low_complexity Low_complexity 4 64 0 2136 119 20 3 chr11 145805403 145805706 -4977847 - AluSq SINE Alu -3 310 3 273 309 175 10 chr11 145805733 145805830 -4977723 - MER5B DNA MER1_type -54 124 12 206 118 0 0 chr11 145805832 145805866 -4977687 + (A)n Simple_repeat Simple_repeat 1 34 0 1794 193 0 0 chr11 145806256 145806551 -4977002 + AluJb SINE Alu 3 297 -15 821 296 68 5 chr11 145806652 145807034 -4976519 + L1ME4a LINE L1 5478 5883 -238 369 315 97 23 chr11 145807380 145807596 -4975957 - MIR SINE MIR -30 232 1 1796 182 22 16 chr11 145808666 145809029 -4974524 + MLT1A1 LTR MaLR 1 365 0 217 304 148 15 chr11 145810749 145810884 -4972669 + MIR SINE MIR 110 262 0 24 67 0 0 chr11 145810885 145810930 -4972623 + AT_rich Low_complexity Low_complexity 1 45 0 501 322 19 19 chr11 145811398 145811606 -4971947 + L3 LINE CR1 1214 1421 -156 2023 205 24 9 chr11 145812343 145812807 -4970746 - MER31A LTR ERV1 -10 475 5 724 306 35 16 chr11 145813866 145814121 -4969432 + MIR SINE MIR 3 262 0 686 173 11 78 chr11 145814755 145814946 -4968607 - MER20 DNA MER1_type -4 215 38 1954 135 11 0 chr11 145814954 145815236 -4968317 + AluSx SINE Alu 1 285 -27 215 133 22 0 chr11 145815555 145815600 -4967953 + (TG)n Simple_repeat Simple_repeat 2 47 0 267 231 100 107 chr11 145815656 145815835 -4967718 - MIR SINE MIR -69 139 15 240 250 18 0 chr11 145816050 145816106 -4967447 + MIR SINE MIR 203 259 -3 1692 188 39 22 chr11 145816106 145816462 -4967091 - MLT1A1 LTR MaLR 0 365 4 507 207 52 22 chr11 145817368 145817503 -4966050 - MIR SINE MIR -71 191 53 218 338 98 8 chr11 145818852 145818985 -4964568 - L3 LINE CR1 -1 1576 1432 452 43 43 0 chr11 145819149 145819218 -4964335 + (TTTTA)n Simple_repeat Simple_repeat 1 72 0 405 248 77 0 chr11 145819514 145819631 -4963922 + MER5A DNA MER1_type 1 126 -63 297 301 18 61 chr11 145819647 145819810 -4963743 - L3 LINE CR1 -112 1465 1310 203 191 0 21 chr11 145820977 145821024 -4962529 + T-rich Low_complexity Low_complexity 3 48 0 277 180 0 0 chr11 145821231 145821281 -4962272 + L2 LINE L2 3264 3313 0 4342 147 22 70 chr11 145821871 145822858 -4960695 - L1MA9 LINE L1 0 6312 5373 2413 185 36 57 chr11 145822864 145823535 -4960018 + L1MA9 LINE L1 4716 5372 -774 373 268 34 73 chr11 145823770 145823975 -4959578 + MIR SINE MIR 20 216 -46 365 227 21 21 chr11 145824376 145824473 -4959080 + MIR SINE MIR 86 182 -80 217 234 0 0 chr11 145824531 145824578 -4958975 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 398 281 151 36 chr11 145825600 145825792 -4957761 - L2 LINE L2 -5 3308 3095 2442 73 0 26 chr11 145826945 145827258 -4956295 + AluY SINE Alu 1 305 -6 224 282 241 31 chr11 145828994 145829189 -4954364 + MIR SINE MIR 21 256 -6 297 253 0 0 chr11 145829349 145829432 -4954121 + L1ME1 LINE L1 5770 5852 -2190 798 254 111 7 chr11 145829602 145829873 -4953680 + L1ME1 LINE L1 5866 6161 -5 252 176 40 40 chr11 145830150 145830224 -4953329 + GA-rich Low_complexity Low_complexity 2 75 0 2046 173 52 5 chr11 145831694 145832075 -4951478 + MER57A LTR ERV1 1 399 -4 1712 112 15 115 chr11 145832182 145832512 -4951041 + AluSx SINE Alu 1 297 -15 225 0 0 0 chr11 145832512 145832537 -4951016 + (GGAA)n Simple_repeat Simple_repeat 1 25 0 1021 127 6 11 chr11 145832548 145832729 -4950824 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 377 243 56 0 chr11 145833705 145833812 -4949741 + Charlie1 DNA MER1_type 1772 1884 -877 286 344 174 15 chr11 145833934 145834129 -4949424 + L3 LINE CR1 586 811 -766 227 333 197 27 chr11 145834297 145834480 -4949073 + L3 LINE CR1 927 1140 -437 3372 196 102 76 chr11 145834486 145835649 -4947904 - Charlie1a DNA MER1_type -262 1193 1 256 258 31 78 chr11 145836075 145836203 -4947350 + MER5A DNA MER1_type 47 168 -21 414 352 6 0 chr11 145837348 145837507 -4946046 - MIR SINE MIR -2 260 101 1114 148 89 0 chr11 145837507 145837710 -4945843 - Tigger5 DNA MER2_type 0 2323 2103 225 204 0 0 chr11 145837708 145837752 -4945801 - Tigger5 DNA MER2_type -2187 136 93 * 29 60 0 0 chr11 145838243 145838293 -4945260 + AT_rich Low_complexity Low_complexity 1 50 0 23 33 0 0 chr11 145838486 145838516 -4945037 + AT_rich Low_complexity Low_complexity 1 30 0 276 216 0 54 chr11 145838599 145838731 -4944822 + AluYb8 SINE Alu 204 329 0 766 304 107 41 chr11 145838764 145841262 -4942291 - L1M4 LINE L1 -1165 4981 2302 1721 150 4 18 chr11 145841262 145841568 -4941985 - AluJo SINE Alu 0 317 16 766 304 107 41 chr11 145841568 145841681 -4941872 - L1M4 LINE L1 -3844 2302 2198 753 291 79 39 chr11 145841674 145842639 -4940914 - L1MEc LINE L1 -1722 4493 3491 * 1135 244 103 27 chr11 145843112 145843706 -4939847 - L1MEc LINE L1 -2833 3382 2744 248 280 70 11 chr11 145843711 145843897 -4939656 - L1MEc LINE L1 -4099 2297 2101 389 295 27 70 chr11 145844885 145845077 -4938476 - L1MEc LINE L1 -5317 888 708 2476 67 3 0 chr11 145845077 145845374 -4938179 - AluSp SINE Alu -15 298 1 389 295 27 70 chr11 145845374 145845439 -4938114 - L1MEc LINE L1 -5497 708 642 967 252 79 99 chr11 145845952 145846750 -4936803 - L1MC5 LINE L1 -535 7426 6645 40871 33 22 1 chr11 145847750 145853809 -4929744 + L1PA3 LINE L1 1 6155 0 180 97 0 0 chr11 145853959 145853990 -4929563 + (A)n Simple_repeat Simple_repeat 1 31 0 274 241 131 44 chr11 145854555 145854692 -4928861 + MIR SINE MIR 37 185 -77 4698 146 20 4 chr11 145854922 145855628 -4927925 - LTR62 LTR ERVK -2 717 1 343 310 160 5 chr11 145856178 145856391 -4927162 + L2 LINE L2 1839 2084 -1230 199 354 93 17 chr11 145856601 145856838 -4926715 + L2 LINE L2 1800 2054 -1260 228 274 0 60 chr11 145856841 145856925 -4926628 + L2 LINE L2 882 960 -2354 2249 302 65 17 chr11 145856944 145857279 -4926274 - HAL1 LINE L1 -1286 1221 903 2453 126 8 3 chr11 145857279 145857637 -4925916 + MER46B DNA MER2_type 2 236 0 2249 302 65 17 chr11 145857637 145858457 -4925096 - HAL1 LINE L1 -1604 903 11 537 301 80 31 chr11 145859663 145860051 -4923502 + L2 LINE L2 1816 2222 -1092 336 79 87 8 chr11 145860051 145860178 -4923375 + (TA)n Simple_repeat Simple_repeat 2 138 0 37 0 0 0 chr11 145860178 145860215 -4923338 + AT_rich Low_complexity Low_complexity 1 37 0 236 91 23 0 chr11 145860215 145860259 -4923294 + (TA)n Simple_repeat Simple_repeat 2 46 0 1633 242 3 8 chr11 145861645 145862001 -4921552 + MLT1F LTR MaLR 26 379 -163 288 275 72 90 chr11 145862425 145862647 -4920906 + MIR SINE MIR 32 249 -13 1178 212 5 9 chr11 145862986 145863203 -4920350 - MER20 DNA MER1_type -3 216 1 201 294 15 15 chr11 145864387 145864455 -4919098 + CT-rich Low_complexity Low_complexity 6 73 0 323 289 50 132 chr11 145865617 145865935 -4917618 + L2 LINE L2 2981 3272 0 232 315 11 46 chr11 145867151 145867338 -4916215 - MIR SINE MIR 0 262 26 381 300 10 0 chr11 145867401 145867501 -4916052 + MER5A DNA MER1_type 10 110 -79 190 338 29 15 chr11 145868184 145868252 -4915301 - L3b LINE CR1 -9 1574 1506 369 342 63 16 chr11 145868545 145868735 -4914818 - MIR3 SINE MIR -3 205 7 213 179 26 0 chr11 145868941 145868980 -4914573 - MIR3 SINE MIR -19 189 150 2339 30 40 17 chr11 145869139 145869435 -4914118 + AluYa5 SINE Alu 1 303 -8 1071 245 29 58 chr11 145869969 145870621 -4912932 - L1ME LINE L1 -4998 1532 898 263 371 0 9 chr11 145871329 145871445 -4912108 - L1ME LINE L1 -6405 135 21 243 0 0 0 chr11 145871557 145871584 -4911969 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2831 90 6 3 chr11 145871783 145872137 -4911416 - THE1A LTR MaLR 0 355 1 26 0 0 0 chr11 145873237 145873263 -4910290 + AT_rich Low_complexity Low_complexity 1 26 0 2069 138 48 38 chr11 145873442 145873813 -4909740 - THE1C LTR MaLR 0 375 1 9327 96 29 121 chr11 145873813 145875553 -4908000 - THE1B-int LTR MaLR 0 1580 1 2846 104 3 6 chr11 145875553 145875918 -4907635 - THE1B LTR MaLR 0 364 1 537 258 138 60 chr11 145875987 145876158 -4907395 - L1ME LINE L1 -344 5818 5662 1895 180 22 35 chr11 145876158 145876524 -4907029 - MLT1A1 LTR MaLR -2 363 3 537 258 138 60 chr11 145876524 145876837 -4906716 - L1ME LINE L1 -500 5662 5296 2379 56 23 3 chr11 145877058 145877362 -4906191 + AluYb8 SINE Alu 1 310 -8 740 268 0 0 chr11 145878743 145878900 -4904653 + MER45A DNA AcHobo 21 177 -1 409 314 43 16 chr11 145878999 145879187 -4904366 + MIR SINE MIR 65 257 -5 194 54 0 54 chr11 145879249 145879286 -4904267 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1800 153 86 91 chr11 145879893 145880323 -4903230 - MSTA LTR MaLR 0 428 1 722 189 0 0 chr11 145880967 145881094 -4902459 + FLAM_C SINE Alu 3 129 -14 345 197 0 0 chr11 145881094 145881170 -4902383 + (CATA)n Simple_repeat Simple_repeat 1 76 0 230 123 53 18 chr11 145881226 145881283 -4902270 - L1MCa LINE L1 -4362 2064 2006 306 185 8 4 chr11 145881301 145881376 -4902177 + L1MC4 LINE L1 1996 6983 -1339 837 203 0 0 chr11 145881395 145881543 -4902010 + AluJb SINE Alu 148 295 -17 357 264 21 118 chr11 145882798 145882942 -4900611 - MIR SINE MIR -88 174 45 2229 108 3 0 chr11 145883448 145883736 -4899817 + AluSp SINE Alu 11 299 -14 290 67 22 0 chr11 145884066 145884111 -4899442 + (CA)n Simple_repeat Simple_repeat 1 46 0 378 275 102 18 chr11 145884293 145884460 -4899093 + L2 LINE L2 3133 3313 0 222 156 0 0 chr11 145884912 145884957 -4898596 + (TAA)n Simple_repeat Simple_repeat 1 45 0 249 380 9 35 chr11 145885019 145885132 -4898421 - MIR SINE MIR -148 114 5 227 133 22 0 chr11 145885296 145885341 -4898212 + (TATG)n Simple_repeat Simple_repeat 4 49 0 2853 91 14 6 chr11 145885451 145885812 -4897741 - THE1B LTR MaLR 0 364 1 30 27 0 0 chr11 145886632 145886669 -4896884 + AT_rich Low_complexity Low_complexity 1 37 0 1160 224 31 0 chr11 145886877 145887105 -4896448 - MER46A DNA MER2_type 0 236 2 2250 168 84 12 chr11 145888559 145888987 -4894566 - LOR1b LTR ERV1 -2 459 1 272 272 54 33 chr11 145889227 145889319 -4894234 + MIR3 SINE MIR 75 168 -40 253 271 29 0 chr11 145889335 145889405 -4894148 - L2 LINE L2 -4 3309 3238 272 227 30 0 chr11 145891000 145891066 -4892487 + CT-rich Low_complexity Low_complexity 2 69 0 371 223 74 10 chr11 145891491 145891619 -4891934 + MER45 DNA AcHobo 34 1578 -3 278 247 4 42 chr11 145891623 145891708 -4891845 + MIR SINE MIR 77 143 -65 2177 117 0 10 chr11 145894164 145894473 -4889080 - AluSx SINE Alu -6 306 1 392 266 12 83 chr11 145894825 145894994 -4888559 + L2 LINE L2 3110 3266 -47 2307 85 0 79 chr11 145895096 145895436 -4888117 - AluSp SINE Alu 0 313 1 361 327 106 24 chr11 145895585 145895793 -4887760 + MIR SINE MIR 35 259 -3 229 370 22 0 chr11 145896597 145896689 -4886864 + MER5B DNA MER1_type 8 101 -77 15394 138 14 8 chr11 145896836 145897837 -4885716 + Tigger1 DNA MER2_type 1 995 -1423 2662 117 56 17 chr11 145897837 145898248 -4885305 + MSTA LTR MaLR 1 427 -1 15394 138 14 8 chr11 145898248 145899650 -4883903 + Tigger1 DNA MER2_type 995 2418 0 308 333 110 37 chr11 145899704 145900058 -4883495 + L2 LINE L2 2934 3313 0 22 35 0 0 chr11 145900071 145900100 -4883453 + AT_rich Low_complexity Low_complexity 1 29 0 295 349 31 0 chr11 145900613 145900742 -4882811 - L3 LINE CR1 -1 1576 1444 327 289 79 0 chr11 145900808 145900922 -4882631 + MIR SINE MIR 80 202 -60 293 358 0 0 chr11 145901664 145901759 -4881794 - MIR SINE MIR -121 141 47 185 366 43 0 chr11 145901788 145901881 -4881672 - L3 LINE CR1 -1020 557 461 523 293 102 5 chr11 145902286 145902491 -4881062 + MIR SINE MIR 6 230 -32 1172 191 150 0 chr11 145904138 145904432 -4879121 - MER58B DNA MER1_type -3 338 1 262 215 25 38 chr11 145905009 145905088 -4878465 - L1MC3 LINE L1 -225 5953 5876 496 256 62 77 chr11 145905091 145905749 -4877804 - L1P4 LINE L1 -653 5515 4764 2234 98 0 7 chr11 145905749 145906046 -4877507 - AluSx SINE Alu -15 297 3 31 76 0 0 chr11 145906049 145906115 -4877438 + AT_rich Low_complexity Low_complexity 1 66 0 326 315 88 48 chr11 145906163 145906436 -4877117 - L1 LINE L1 -1809 4337 4054 612 206 58 95 chr11 145906437 145906626 -4876927 + MLT1E LTR MaLR 1 182 -360 3484 202 83 16 chr11 145906629 145908064 -4875489 - L1MB8 LINE L1 -16 7581 6040 548 287 115 15 chr11 145908166 145908427 -4875126 - LTR50 LTR ERVL -208 587 301 35 41 0 0 chr11 145908666 145908715 -4874838 + AT_rich Low_complexity Low_complexity 1 49 0 7682 145 68 0 chr11 145909448 145910749 -4872804 - L1MB8 LINE L1 -4656 2909 1521 553 149 65 52 chr11 145911457 145911611 -4871942 + LTR10B LTR ERV1 1 156 -391 1415 176 110 14 chr11 145911772 145912136 -4871417 + LTR10B LTR ERV1 126 524 -23 230 260 77 10 chr11 145912241 145912345 -4871208 - L1MB8 LINE L1 -6416 1047 937 357 359 93 24 chr11 145912542 145912952 -4870601 - L2 LINE L2 -1197 2117 1680 1094 116 0 0 chr11 145913643 145913798 -4869755 + AluSg/x SINE Alu 154 308 -4 3938 221 11 6 chr11 145913799 145914694 -4868859 + L1PA15-16 LINE L1 2059 2958 -3891 1819 173 77 6 chr11 145914797 145915149 -4868404 + MER41-int LTR ERV1 316 692 -6845 * 3264 156 66 0 chr11 145915137 145915664 -4867889 + MER41-int LTR ERV1 298 859 -5087 842 160 62 7 chr11 145915647 145915791 -4867762 + MER41-int LTR ERV1 1550 1701 -5836 * 216 0 0 0 chr11 145915791 145915815 -4867738 + (TC)n Simple_repeat Simple_repeat 1 24 0 3498 175 64 24 chr11 145915916 145916447 -4867106 - L1MC3 LINE L1 -58 7727 7154 2117 138 33 28 chr11 145916447 145916809 -4866744 - THE1B LTR MaLR 0 364 1 3498 175 64 24 chr11 145916809 145917058 -4866495 - L1MC3 LINE L1 -631 7154 6916 239 281 158 26 chr11 145917323 145917437 -4866116 - L1MCc LINE L1 -5956 467 339 558 254 23 12 chr11 145917450 145917623 -4865930 - L1MCc LINE L1 -6179 244 70 4382 218 67 48 chr11 145918270 145919364 -4864189 + L1 LINE L1 2367 3492 -2654 2344 55 7 3 chr11 145919364 145919657 -4863896 + AluY SINE Alu 4 297 -14 4382 218 67 48 chr11 145919657 145919874 -4863679 + L1 LINE L1 3492 3703 -2443 2201 72 0 0 chr11 145919974 145920251 -4863302 - AluY SINE Alu -34 277 1 192 275 50 50 chr11 145920743 145920823 -4862730 - MIR SINE MIR -71 191 112 1440 299 60 31 chr11 145921805 145922650 -4860903 - L1ME1 LINE L1 -4 6162 5293 4390 106 56 0 chr11 145922900 145923522 -4860031 + HSMAR1 DNA Mariner 631 1287 0 542 337 216 7 chr11 145924094 145924507 -4859046 - L2 LINE L2 -337 2977 2479 180 417 17 25 chr11 145924770 145924890 -4858663 - MIR SINE MIR -126 136 18 21 57 0 0 chr11 145927078 145927113 -4856440 + AT_rich Low_complexity Low_complexity 1 35 0 935 292 62 68 chr11 145927242 145927755 -4855798 + L1MEc LINE L1 73 582 -5814 7050 165 33 59 chr11 145927862 145931412 -4852141 - L1PA7 LINE L1 -96 6058 2616 2438 49 20 0 chr11 145931412 145931716 -4851837 + AluY SINE Alu 1 310 -1 7050 165 33 59 chr11 145931716 145932116 -4851437 - L1PA7 LINE L1 -3538 2616 2207 5230 173 31 29 chr11 145932137 145933896 -4849657 - L1MA4A LINE L1 -11 6292 4534 442 313 42 8 chr11 145933903 145934264 -4849289 - L1M4c LINE L1 -3941 3018 2646 21 0 0 0 chr11 145934405 145934426 -4849127 + AT_rich Low_complexity Low_complexity 1 21 0 1355 301 30 24 chr11 145934630 145935268 -4848285 - L1M4c LINE L1 -4543 2416 1775 * 4770 206 49 28 chr11 145935263 145936619 -4846934 - L1MC1 LINE L1 0 6333 4927 180 0 0 0 chr11 145936619 145936639 -4846914 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4770 206 49 28 chr11 145936639 145937102 -4846451 - L1MC1 LINE L1 -1406 4927 4475 1354 234 39 42 chr11 145937102 145937367 -4846186 - L1M4c LINE L1 -5058 1797 1533 1843 185 0 0 chr11 145937367 145937664 -4845889 - AluJo SINE Alu -15 297 1 1354 234 39 42 chr11 145937664 145937944 -4845609 - L1M4c LINE L1 -5322 1533 1254 2287 262 66 55 chr11 145938491 145939397 -4844156 - L1M4c LINE L1 -5933 926 11 21 0 0 0 chr11 145939544 145939565 -4843988 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr11 145939639 145939667 -4843886 + AT_rich Low_complexity Low_complexity 1 28 0 405 102 0 0 chr11 145941065 145941124 -4842429 + (TG)n Simple_repeat Simple_repeat 2 60 0 201 222 127 48 chr11 145942030 145942093 -4841460 - MIR SINE MIR -78 184 117 199 331 84 28 chr11 145942280 145942458 -4841095 + MIR SINE MIR 22 209 -53 207 250 0 0 chr11 145942721 145942769 -4840784 + (CAT)n Simple_repeat Simple_repeat 3 50 0 240 35 0 0 chr11 145942831 145942860 -4840693 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 203 274 20 0 chr11 145944099 145944150 -4839403 - L2 LINE L2 -7 3306 3255 313 265 53 15 chr11 145945166 145945298 -4838255 - L3 LINE CR1 -166 1411 1275 1456 196 25 22 chr11 145945411 145945728 -4837825 + MER74A LTR ERVL 241 558 0 276 221 65 39 chr11 145946157 145946234 -4837319 - L2 LINE L2 0 3313 3235 366 275 26 1 chr11 145946244 145946371 -4837182 + L1ME LINE L1 5384 5512 -652 440 323 99 9 chr11 145946671 145946894 -4836659 - MIR SINE MIR -6 256 14 228 278 19 0 chr11 145946903 145946957 -4836596 - MIR SINE MIR -62 146 92 905 113 0 0 chr11 145946962 145947095 -4836458 - L1PA11 LINE L1 -1 6173 6041 187 305 11 53 chr11 145947325 145947420 -4836133 + MIR SINE MIR 93 183 -79 423 297 80 36 chr11 145948205 145948454 -4835099 + L1M4 LINE L1 5119 5378 -768 203 233 0 0 chr11 145948521 145948564 -4834989 + CT-rich Low_complexity Low_complexity 1 43 0 2127 108 24 0 chr11 145948752 145949049 -4834504 - AluSp SINE Alu -9 304 1 243 88 0 0 chr11 145949132 145949166 -4834387 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2701 149 35 10 chr11 145949166 145949655 -4833898 - L1MB1 LINE L1 -8 6746 6246 5004 84 22 6 chr11 145949655 145950368 -4833185 + L1PA13 LINE L1 5419 6144 -19 6090 200 18 23 chr11 145950376 145952162 -4831391 - L1MB1 LINE L1 -495 6259 4490 2472 256 58 30 chr11 145952172 145953000 -4830553 - L1MB1 LINE L1 -3055 3677 2813 1945 151 7 0 chr11 145953000 145953304 -4830249 + AluJo SINE Alu 1 306 -6 2472 256 58 30 chr11 145953304 145953595 -4829958 - L1MB1 LINE L1 -3919 2813 2531 21 71 0 0 chr11 145953694 145953736 -4829817 + AT_rich Low_complexity Low_complexity 1 42 0 684 298 78 67 chr11 145953848 145954213 -4829340 - L1MB1 LINE L1 -5205 1448 457 462 240 17 51 chr11 145955640 145955815 -4827738 - L1ME3 LINE L1 -276 5886 5718 350 338 69 45 chr11 145957981 145958401 -4825152 + HAL1b LINE L1 98 527 -821 22 70 0 0 chr11 145959077 145959120 -4824433 + AT_rich Low_complexity Low_complexity 1 43 0 1495 82 65 0 chr11 145959766 145959997 -4823556 - HERVH LTR ERV1 -144 7569 7324 1292 139 19 0 chr11 145959997 145960213 -4823340 - HERVH LTR ERV1 -1894 5819 5600 4166 139 0 1 chr11 145960214 145960877 -4822676 - HERVH LTR ERV1 -2564 5149 4488 23729 96 55 17 chr11 145960879 145964725 -4818828 - HERVH LTR ERV1 -3720 3993 1 2402 87 148 5 chr11 145964727 145965119 -4818434 - LTR7 LTR ERV1 -2 448 1 467 288 53 28 chr11 145965119 145965515 -4818038 + L1M4 LINE L1 4298 4703 -1443 467 163 0 23 chr11 145965667 145965753 -4817800 - FLAM_C SINE Alu -23 120 37 463 305 58 70 chr11 145965787 145966288 -4817265 + L1M4 LINE L1 4909 5403 -743 31 82 0 0 chr11 145967158 145967231 -4816322 + AT_rich Low_complexity Low_complexity 1 73 0 267 31 0 0 chr11 145967583 145967615 -4815938 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 301 213 11 11 chr11 145968093 145968187 -4815366 + CT-rich Low_complexity Low_complexity 1 94 0 810 151 0 8 chr11 145968285 145968411 -4815142 - FAM SINE Alu -41 144 20 203 286 13 26 chr11 145968687 145968764 -4814789 + CT-rich Low_complexity Low_complexity 3 78 0 2120 109 27 0 chr11 145969779 145970072 -4813481 + AluSx SINE Alu 1 301 -11 2247 125 0 0 chr11 145970800 145971103 -4812450 - AluSc SINE Alu -6 303 1 1970 48 0 0 chr11 145972783 145973012 -4810541 - AluY SINE Alu -13 298 70 533 32 0 0 chr11 145973013 145973076 -4810477 + AluY SINE Alu 11 73 -237 21 0 0 0 chr11 145973079 145973100 -4810453 + AT_rich Low_complexity Low_complexity 1 21 0 2811 61 3 11 chr11 145973541 145973916 -4809637 + L1PA8 LINE L1 5801 6172 0 290 292 0 0 chr11 145974291 145974363 -4809190 - L2 LINE L2 0 3313 3242 404 311 73 78 chr11 145975038 145975408 -4808145 - L2 LINE L2 -12 3301 2934 2025 309 128 30 chr11 145975408 145976681 -4806872 - L2 LINE L2 -499 2815 1418 281 308 51 15 chr11 145977092 145977227 -4806326 + MIR SINE MIR 20 157 -104 739 188 176 0 chr11 145979181 145979346 -4804207 - AluJb SINE Alu -118 194 1 224 411 14 0 chr11 145980095 145980168 -4803385 + MIR SINE MIR 2 75 -187 494 151 21 0 chr11 145980238 145980331 -4803222 - MER58 DNA MER1_type -8 2412 2318 480 202 53 0 chr11 145980343 145980437 -4803116 - MER58 DNA MER1_type -2321 99 1 188 360 34 22 chr11 145980440 145980529 -4803024 + MIR SINE MIR 158 247 -15 21 36 0 0 chr11 145980750 145980778 -4802775 + AT_rich Low_complexity Low_complexity 1 28 0 285 279 27 36 chr11 145981461 145981599 -4801954 - MIR SINE MIR -66 142 6 295 336 136 14 chr11 145981798 145982018 -4801535 + MIR SINE MIR 16 262 0 22 56 0 0 chr11 145982501 145982537 -4801016 + AT_rich Low_complexity Low_complexity 1 36 0 247 259 82 0 chr11 145982677 145982762 -4800791 - L2 LINE L2 -36 3277 3186 222 62 0 0 chr11 145984528 145984560 -4798993 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 398 304 36 14 chr11 145984975 145985113 -4798440 - L2 LINE L2 0 3313 3173 927 142 0 0 chr11 145985192 145985354 -4798199 + L1MC1 LINE L1 4787 4948 -1198 2281 179 19 37 chr11 145985413 145985878 -4797675 + MLT2B2 LTR ERVL 9 465 -50 5124 200 22 3 chr11 145985965 145987285 -4796268 + L1MC1 LINE L1 4991 6333 0 2510 275 34 35 chr11 145987353 145988226 -4795327 + L1M4 LINE L1 16 887 -5655 * 3694 245 68 22 chr11 145988225 145988519 -4795034 + L1M4 LINE L1 2608 2887 -3757 2480 126 3 3 chr11 145988519 145988883 -4794670 - THE1B LTR MaLR 0 364 1 3694 245 68 22 chr11 145988883 145989949 -4793604 + L1M4 LINE L1 2887 4047 -2597 451 128 26 0 chr11 145989949 145990027 -4793526 + MADE1 DNA Mariner 1 80 0 3694 245 68 22 chr11 145990027 145990190 -4793363 + L1M4 LINE L1 4047 4201 -2443 1773 179 21 6 chr11 145990213 145990553 -4793000 + L1MB7 LINE L1 5831 6175 -9 419 306 18 0 chr11 145990588 145990699 -4792854 + MER81 DNA DNA 1 113 -1 186 103 0 0 chr11 145991127 145991156 -4792397 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2293 97 0 3 chr11 145992721 145993021 -4790532 - AluSc SINE Alu -10 299 1 521 238 90 0 chr11 145993170 145993292 -4790261 + MER5A DNA MER1_type 1 133 -56 2335 117 0 0 chr11 145993357 145993665 -4789888 - AluSp SINE Alu -5 308 1 2321 81 0 19 chr11 145993676 145993986 -4789567 - AluY SINE Alu -5 306 3 683 307 79 30 chr11 145995295 145995699 -4787854 - LTR16A LTR ERVL 0 450 27 1893 109 106 0 chr11 145995857 145996131 -4787422 + AluSq SINE Alu 1 303 -10 642 276 65 9 chr11 145996725 145996939 -4786614 + MIR SINE MIR 37 262 0 228 263 44 18 chr11 145998384 145998498 -4785055 + MARNA DNA Mariner 411 527 -59 2104 136 7 0 chr11 145999323 145999633 -4783920 - AluSx SINE Alu 0 312 1 358 326 49 46 chr11 145999877 146000162 -4783391 + L2 LINE L2 2599 2884 -430 207 204 41 20 chr11 146000445 146000494 -4783059 + L2 LINE L2 3264 3313 0 217 361 50 8 chr11 146000539 146000658 -4782895 - L2 LINE L2 -219 3053 2930 375 23 0 0 chr11 146001856 146001900 -4781653 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chr11 146002450 146002478 -4781075 + AT_rich Low_complexity Low_complexity 1 28 0 228 322 76 35 chr11 146002817 146002988 -4780565 + MIR SINE MIR 19 196 -66 21 0 0 0 chr11 146004783 146004804 -4778749 + AT_rich Low_complexity Low_complexity 1 21 0 1977 147 0 17 chr11 146004806 146005105 -4778448 + AluSg SINE Alu 1 294 -16 391 281 52 59 chr11 146005548 146005701 -4777852 - MIR SINE MIR -83 179 28 297 0 0 0 chr11 146006622 146006655 -4776898 + (TG)n Simple_repeat Simple_repeat 1 33 0 295 265 108 0 chr11 146006678 146006761 -4776792 + L2 LINE L2 3188 3279 -34 253 258 70 0 chr11 146006913 146007019 -4776534 + MLT1K LTR MaLR 495 588 0 297 89 0 0 chr11 146007064 146007109 -4776444 + (TC)n Simple_repeat Simple_repeat 2 46 0 195 42 0 0 chr11 146007109 146007133 -4776420 + (CA)n Simple_repeat Simple_repeat 1 24 0 303 28 0 0 chr11 146007890 146007926 -4775627 + (TG)n Simple_repeat Simple_repeat 2 37 0 2087 90 6 84 chr11 146008012 146008334 -4775219 + AluSq SINE Alu 1 297 -16 835 167 4 12 chr11 146008401 146008669 -4774884 + GA-rich Low_complexity Low_complexity 1 265 0 1040 140 0 14 chr11 146008672 146009034 -4774519 + (GGAA)n Simple_repeat Simple_repeat 1 358 0 201 375 40 32 chr11 146010186 146010437 -4773116 + L3 LINE CR1 1001 1253 -324 323 273 65 36 chr11 146010604 146010743 -4772810 - MIR SINE MIR -119 143 1 21 0 0 0 chr11 146010932 146010953 -4772600 + AT_rich Low_complexity Low_complexity 1 21 0 890 149 54 0 chr11 146010954 146011102 -4772451 - L1MA3 LINE L1 0 6305 6150 219 294 59 78 chr11 146011141 146011294 -4772259 + L3 LINE CR1 1408 1557 -20 253 246 0 123 chr11 146011947 146012061 -4771492 - MIR3 SINE MIR -7 201 102 440 318 99 9 chr11 146012922 146013145 -4770408 - MIR SINE MIR 0 262 20 259 272 263 0 chr11 146013841 146013955 -4769598 - MER5A DNA MER1_type 0 189 46 2633 49 0 0 chr11 146014193 146014499 -4769054 - AluY SINE Alu -5 306 1 260 308 0 84 chr11 146015266 146015409 -4768144 + MIR SINE MIR 19 149 -113 1087 297 68 17 chr11 146016379 146016888 -4766665 - L2 LINE L2 -1 3312 2777 2265 114 3 0 chr11 146016974 146017280 -4766273 - AluSp SINE Alu -6 307 1 362 302 39 0 chr11 146017349 146017478 -4766075 + MER94 DNA DNA 1 134 0 509 299 79 59 chr11 146017569 146018064 -4765489 + LTR33 LTR ERVL 17 521 0 234 0 0 0 chr11 146019381 146019407 -4764146 + (GA)n Simple_repeat Simple_repeat 2 27 0 2099 128 3 23 chr11 146021616 146021922 -4761631 - AluSx SINE Alu -12 300 1 1628 182 7 7 chr11 146021927 146022218 -4761335 - AluJo SINE Alu -21 291 1 430 321 29 22 chr11 146023302 146023439 -4760114 - L2 LINE L2 -1 3271 3134 254 333 67 27 chr11 146023730 146023880 -4759673 + MIR SINE MIR 17 172 -90 21 0 0 0 chr11 146025757 146025778 -4757775 + AT_rich Low_complexity Low_complexity 1 21 0 50 80 0 0 chr11 146025819 146025932 -4757621 + AT_rich Low_complexity Low_complexity 1 113 0 213 121 0 0 chr11 146027231 146027264 -4756289 + (CA)n Simple_repeat Simple_repeat 2 34 0 188 259 114 89 chr11 146027745 146027903 -4755650 - MIR3 SINE MIR -24 184 23 229 254 336 18 chr11 146028230 146028340 -4755213 + MIR SINE MIR 88 232 -30 2357 169 49 0 chr11 146029182 146029590 -4753963 - MSTA LTR MaLR 0 428 1 195 42 0 0 chr11 146030667 146030691 -4752862 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 212 286 0 0 chr11 146031082 146031138 -4752415 + (TA)n Simple_repeat Simple_repeat 2 57 0 182 219 151 41 chr11 146031780 146031853 -4751700 + L2 LINE L2 3155 3235 -37 208 93 23 23 chr11 146032154 146032197 -4751356 + (TTG)n Simple_repeat Simple_repeat 2 44 0 3506 226 40 20 chr11 146033373 146034720 -4748833 - L1MB7 LINE L1 -3 6181 4807 2465 68 3 0 chr11 146034861 146035157 -4748396 - AluY SINE Alu -14 297 1 1282 214 30 26 chr11 146036071 146036374 -4747179 + AluJb SINE Alu 1 304 -8 2277 99 0 3 chr11 146036405 146036699 -4746854 + AluSq SINE Alu 1 293 -20 5224 120 9 13 chr11 146036727 146037488 -4746065 + L1PA16 LINE L1 5409 6166 0 675 296 35 0 chr11 146037504 146037673 -4745880 + MIR SINE MIR 74 248 -14 250 257 38 38 chr11 146037712 146037817 -4745736 + L2 LINE L2 2630 2734 -580 300 380 34 77 chr11 146037958 146038311 -4745242 + L2 LINE L2 2908 3245 -27 24 0 0 0 chr11 146041550 146041574 -4741979 + AT_rich Low_complexity Low_complexity 1 24 0 1571 200 58 53 chr11 146041949 146042344 -4741209 + LTR39 LTR ERV1 1 397 -386 1232 186 45 4 chr11 146042336 146042583 -4740970 + LTR39 LTR ERV1 527 783 0 * 2067 112 0 0 chr11 146043093 146043399 -4740154 + AluSc SINE Alu 2 307 0 623 309 159 32 chr11 146043583 146044023 -4739530 - L2 LINE L2 -2 3311 2816 32 0 0 0 chr11 146044337 146044369 -4739184 + AT_rich Low_complexity Low_complexity 1 32 0 194 330 0 34 chr11 146045338 146045426 -4738127 + MIR SINE MIR 48 132 -130 1656 146 0 8 chr11 146045679 146045932 -4737621 + AluSg SINE Alu 60 310 0 1758 187 10 7 chr11 146047090 146047390 -4736163 - AluJo SINE Alu -11 301 1 204 351 122 34 chr11 146048332 146048480 -4735073 + MIR3 SINE MIR 21 181 -27 511 286 48 12 chr11 146050067 146050235 -4733318 - MIR3 SINE MIR -2 206 33 360 269 39 31 chr11 146052042 146052172 -4731381 - L2 LINE L2 -1 3312 3182 197 103 128 103 chr11 146052328 146052406 -4731147 + MIR SINE MIR 48 127 -135 1874 153 80 40 chr11 146052843 146053243 -4730310 + MSTC LTR MaLR 11 426 -2 271 271 110 121 chr11 146054067 146054348 -4729205 - L2 LINE L2 -6 3266 2989 208 330 28 19 chr11 146054703 146054809 -4728744 + L2 LINE L2 2569 2675 -639 713 223 64 16 chr11 146055231 146055419 -4728134 - MER3 DNA MER1_type -10 199 3 1761 140 87 3 chr11 146056014 146056300 -4727253 + AluSg SINE Alu 1 310 0 271 310 108 22 chr11 146058475 146058703 -4724850 - MIR SINE MIR -6 256 15 1302 161 13 4 chr11 146059256 146059486 -4724067 + L1PA16 LINE L1 5909 6140 -26 196 29 0 57 chr11 146059486 146059521 -4724032 + (TAAAA)n Simple_repeat Simple_repeat 1 33 0 315 344 115 10 chr11 146061005 146061197 -4722356 + MIR SINE MIR 49 260 -2 2037 159 17 3 chr11 146061838 146062191 -4721362 - MER6 DNA MER2_type -2 863 506 2117 120 0 19 chr11 146062208 146062517 -4721036 - AluSx SINE Alu -9 303 1 1793 217 66 3 chr11 146062518 146062896 -4720657 - MER6 DNA MER2_type -462 403 2 284 351 16 18 chr11 146062971 146063111 -4720442 - MIR SINE MIR -60 148 45 2084 109 0 11 chr11 146064299 146064467 -4719086 - AluSx SINE Alu -11 301 136 2473 53 0 3 chr11 146064467 146064766 -4718787 - AluY SINE Alu -13 298 1 2084 109 0 11 chr11 146064766 146064881 -4718672 - AluSx SINE Alu -176 136 21 472 325 57 10 chr11 146065616 146065810 -4717743 - MIR SINE MIR -50 212 10 412 303 100 55 chr11 146065971 146066370 -4717183 + L1ME4a LINE L1 4882 5298 -848 191 365 9 19 chr11 146066713 146066820 -4716733 + L2 LINE L2 3200 3305 -8 448 265 108 33 chr11 146066852 146067158 -4716395 + L1ME4a LINE L1 5752 6080 -41 911 81 0 0 chr11 146067267 146067422 -4716131 - AluY SINE Alu 0 326 172 237 301 116 17 chr11 146067646 146067819 -4715734 + MLT1H LTR MaLR 109 298 -251 400 302 50 7 chr11 146067859 146067998 -4715555 + MLT1H LTR MaLR 392 536 -13 326 257 119 75 chr11 146068701 146068927 -4714626 - MIR SINE MIR -1 261 26 6842 128 38 30 chr11 146069647 146070238 -4713315 + Tigger3b DNA MER2_type 1 586 -2442 2374 85 0 19 chr11 146070238 146070555 -4712998 + AluY SINE Alu 1 311 0 6842 128 38 30 chr11 146070555 146071178 -4712375 + Tigger3b DNA MER2_type 586 1224 -7 279 236 22 22 chr11 146071710 146071799 -4711754 + (CA)n Simple_repeat Simple_repeat 1 89 0 344 260 123 27 chr11 146072514 146072660 -4710893 - L2 LINE L2 0 3313 3154 247 0 25 50 chr11 146073612 146073652 -4709901 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 345 258 98 77 chr11 146073914 146074201 -4709352 + L1ME LINE L1 3871 4163 -1983 400 318 5 27 chr11 146075019 146075152 -4708401 + L1ME LINE L1 5273 5407 -767 4178 187 55 59 chr11 146075152 146075503 -4708050 + Tigger6a DNA MER2_type 1 352 -1245 1413 194 49 17 chr11 146075503 146075671 -4707882 - AluJo SINE Alu -15 297 115 391 53 67 0 chr11 146075671 146075746 -4707807 + (TA)n Simple_repeat Simple_repeat 2 81 0 1413 194 49 17 chr11 146075746 146075865 -4707688 - AluJo SINE Alu -197 115 1 4178 187 55 59 chr11 146075865 146076600 -4706953 + Tigger6a DNA MER2_type 352 1083 0 400 318 5 27 chr11 146076600 146076676 -4706877 + L1ME LINE L1 5407 5478 -696 1141 260 34 34 chr11 146077282 146077779 -4705774 - L1ME LINE L1 -5077 993 497 5668 121 13 30 chr11 146077833 146078947 -4704606 - L1PB1 LINE L1 -4 6147 5044 1308 184 29 97 chr11 146079074 146079455 -4704098 - MLT1A1 LTR MaLR 0 365 11 236 196 0 20 chr11 146079500 146079551 -4704002 - L1ME LINE L1 -5682 388 339 3424 253 61 55 chr11 146080255 146083570 -4699983 + L1MC3 LINE L1 3 3399 -3165 4832 101 0 0 chr11 146083570 146084242 -4699311 + L1PA14 LINE L1 5486 6157 -4 3424 253 61 55 chr11 146084242 146084781 -4698772 + L1MC3 LINE L1 3399 3933 -2631 875 194 19 57 chr11 146084786 146085028 -4698525 + AluJb SINE Alu 85 318 0 515 297 127 9 chr11 146085028 146085240 -4698313 + L1MC3 LINE L1 3931 4167 -2397 * 601 211 8 4 chr11 146085236 146085403 -4698150 + L1MC3 LINE L1 4527 4696 -1868 454 49 65 24 chr11 146085466 146085589 -4697964 + (TA)n Simple_repeat Simple_repeat 2 129 0 10178 205 76 24 chr11 146085593 146086853 -4696700 + L1MC3 LINE L1 4746 5939 -2264 3789 115 9 59 chr11 146086853 146087497 -4696056 + LTR9 LTR ERV1 1 612 0 10178 205 76 24 chr11 146087497 146089279 -4694274 + L1MC3 LINE L1 5939 8136 -67 378 0 0 0 chr11 146089361 146089403 -4694150 + (TG)n Simple_repeat Simple_repeat 1 42 0 532 343 69 28 chr11 146089409 146090015 -4693538 - L1M4 LINE L1 -1339 4807 4177 390 296 68 68 chr11 146090085 146090956 -4692597 - HAL1 LINE L1 -744 1763 893 289 306 75 0 chr11 146090970 146091104 -4692449 - HAL1 LINE L1 -1570 937 794 305 329 92 30 chr11 146091195 146091490 -4692063 - HAL1 LINE L1 -1925 582 270 237 185 43 11 chr11 146091556 146091648 -4691905 + (TA)n Simple_repeat Simple_repeat 2 96 0 23 0 0 0 chr11 146093917 146093940 -4689613 + AT_rich Low_complexity Low_complexity 1 23 0 212 293 41 65 chr11 146094049 146094172 -4689381 + MER5A DNA MER1_type 43 162 -27 292 375 23 8 chr11 146094180 146094308 -4689245 - MIR SINE MIR -58 150 21 542 332 26 61 chr11 146095289 146095750 -4687803 + MLT1K LTR MaLR 142 586 -2 180 0 0 0 chr11 146096024 146096044 -4687509 + (CAT)n Simple_repeat Simple_repeat 2 21 0 394 239 106 106 chr11 146096721 146096985 -4686568 + MLT1L LTR MaLR 30 293 -322 460 310 56 35 chr11 146097946 146098178 -4685375 + MLT1K LTR MaLR 320 556 -32 198 0 0 0 chr11 146098183 146098205 -4685348 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2247 104 0 3 chr11 146098841 146099138 -4684415 - AluSx SINE Alu -16 296 1 195 260 219 0 chr11 146099181 146099254 -4684299 + MIR3 SINE MIR 108 196 -12 404 341 8 0 chr11 146100495 146100621 -4682932 + L2 LINE L2 3187 3313 0 420 243 360 0 chr11 146100703 146100892 -4682661 + MIR SINE MIR 6 262 0 226 311 33 0 chr11 146100913 146100974 -4682579 - MIR3 SINE MIR -133 75 13 568 279 77 65 chr11 146103086 146103516 -4680037 - MLT1J2 LTR MaLR -2 444 1 2243 122 0 0 chr11 146104088 146104400 -4679153 - AluSx SINE Alu 0 312 1 4677 187 34 65 chr11 146105070 146106899 -4676654 - L1MA10 LINE L1 -2 6332 4562 2204 168 64 0 chr11 146107163 146107568 -4675985 - MSTB1 LTR MaLR -1 431 1 865 97 0 0 chr11 146107630 146107744 -4675809 + AluSg/x SINE Alu 188 301 -9 16648 148 38 10 chr11 146108184 146111128 -4672425 - Tigger3(Golem) DNA MER2_type -1 3028 2 216 274 41 41 chr11 146111554 146111627 -4671926 + L3b LINE CR1 1370 1442 -141 345 347 34 16 chr11 146112635 146112763 -4670790 - MIR SINE MIR -61 147 19 23 0 0 0 chr11 146112934 146112957 -4670596 + AT_rich Low_complexity Low_complexity 1 23 0 794 296 145 48 chr11 146114443 146115282 -4668271 - HAL1 LINE L1 -295 2212 1267 190 28 28 56 chr11 146115282 146115318 -4668235 + (TTA)n Simple_repeat Simple_repeat 2 36 0 794 296 145 48 chr11 146115318 146115434 -4668119 - HAL1 LINE L1 -1240 1267 1164 2902 220 110 94 chr11 146115503 146116064 -4667489 - L1MC3 LINE L1 -32 7753 7203 248 329 13 0 chr11 146116064 146116140 -4667413 - MLT1F1 LTR MaLR -456 111 35 2902 220 110 94 chr11 146116140 146116363 -4667190 - L1MC3 LINE L1 -582 7203 6985 209 33 33 0 chr11 146116363 146116393 -4667160 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2902 220 110 94 chr11 146116393 146116628 -4666925 - L1MC3 LINE L1 -800 6985 6640 3841 163 31 16 chr11 146116628 146117381 -4666172 - LTR1B LTR ERV1 0 785 1 4306 220 28 53 chr11 146117381 146118635 -4664918 - L1MC3 LINE L1 -1142 6643 5422 3243 258 80 85 chr11 146118683 146119350 -4664203 - L1MEc LINE L1 -13 6226 5557 333 0 0 0 chr11 146119350 146119387 -4664166 + (TG)n Simple_repeat Simple_repeat 2 38 0 3243 258 80 85 chr11 146119387 146122874 -4660679 - L1MEc LINE L1 -682 5557 2122 687 271 35 62 chr11 146123170 146123266 -4660287 - L1MEc LINE L1 -4658 1738 1641 2593 78 3 0 chr11 146123266 146123613 -4659940 - L1PA6 LINE L1 -3 6151 5804 687 271 35 62 chr11 146123613 146124032 -4659521 - L1MEc LINE L1 -4755 1641 1237 343 276 59 79 chr11 146124088 146124291 -4659262 - HAL1 LINE L1 -1467 1040 842 222 165 58 0 chr11 146124293 146124396 -4659157 + (TAGA)n Simple_repeat Simple_repeat 3 111 0 351 359 37 69 chr11 146124396 146124498 -4659055 - HAL1 LINE L1 -1679 828 724 207 0 0 0 chr11 146124498 146124521 -4659032 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 351 359 37 69 chr11 146124521 146125086 -4658467 - HAL1 LINE L1 -1783 724 182 424 335 21 37 chr11 146126517 146126708 -4656845 + MER5A DNA MER1_type 1 188 -1 405 288 84 51 chr11 146127884 146128085 -4655468 + MIR SINE MIR 28 238 -24 4120 133 46 14 chr11 146128085 146128785 -4654768 + MER72 LTR ERV1 1 722 0 405 288 84 51 chr11 146128785 146128798 -4654755 + MIR SINE MIR 238 249 -13 4175 234 13 7 chr11 146128799 146129784 -4653769 - ERVL LTR ERVL -4142 1622 583 400 219 0 20 chr11 146129892 146129995 -4653558 - L1MA6 LINE L1 -30 6267 6168 1122 286 86 34 chr11 146130042 146130510 -4653043 - ERVL LTR ERVL -5271 493 2 908 206 65 40 chr11 146130720 146130967 -4652586 - MLT1B LTR MaLR -136 254 2 258 322 175 17 chr11 146131396 146131573 -4651980 - MIR SINE MIR -12 250 46 211 223 66 141 chr11 146132141 146132205 -4651348 + L2 LINE L2 2579 2631 -683 1963 108 7 52 chr11 146132205 146132512 -4651041 - AluSq SINE Alu -20 293 1 211 223 66 141 chr11 146132512 146132568 -4650985 + L2 LINE L2 2631 2690 -624 552 141 0 0 chr11 146132569 146132654 -4650899 + AluJ/FLAM SINE Alu 1 85 -227 915 257 73 61 chr11 146132654 146133244 -4650309 + L2 LINE L2 2681 3285 -28 272 236 28 0 chr11 146133359 146133431 -4650122 - Charlie7 DNA MER1_type -2511 101 28 635 304 81 32 chr11 146134090 146134655 -4648898 + L1ME3A LINE L1 774 1366 -5006 316 327 80 0 chr11 146134839 146135038 -4648515 + HAL1 LINE L1 1455 1669 -838 316 310 44 23 chr11 146135325 146135541 -4648012 + L1ME3A LINE L1 2331 2549 -3833 240 310 100 25 chr11 146135698 146135898 -4647655 + L1ME3A LINE L1 2733 2947 -3435 491 345 67 38 chr11 146135957 146136411 -4647142 + L1ME3A LINE L1 3045 3521 -2861 2351 161 16 23 chr11 146136411 146136840 -4646713 - MSTB LTR MaLR 0 426 1 491 345 67 38 chr11 146136840 146136967 -4646586 + L1ME3A LINE L1 3521 3643 -2739 260 280 13 13 chr11 146137145 146137220 -4646333 + L1ME3A LINE L1 4276 4350 -2032 357 269 94 17 chr11 146137552 146137786 -4645767 + L1ME3A LINE L1 4692 4943 -1439 25 0 0 0 chr11 146137951 146137976 -4645577 + AT_rich Low_complexity Low_complexity 1 25 0 624 287 41 21 chr11 146137980 146138318 -4645235 + L1ME3A LINE L1 5231 5575 -807 589 281 98 33 chr11 146138344 146138764 -4644789 + L1ME3A LINE L1 5623 6069 -337 658 281 125 48 chr11 146139176 146139631 -4643922 - L2 LINE L2 -1108 2206 1705 2452 78 3 0 chr11 146139631 146139938 -4643615 - AluSq SINE Alu -5 308 1 658 281 125 48 chr11 146139938 146140001 -4643552 - L2 LINE L2 -1609 1705 1648 368 306 53 19 chr11 146190618 146190827 -4592726 - LTR33 LTR ERVL -4 517 302 253 221 118 0 chr11 146190994 146191062 -4592491 - LTR33 LTR ERVL -428 93 18 448 330 20 30 chr11 146191685 146191882 -4591671 - MIR SINE MIR -12 250 56 226 314 20 39 chr11 146192293 146192395 -4591158 - MER91 DNA MER1_type -57 139 40 810 155 19 7 chr11 146192395 146192550 -4591003 - MER34C LTR ERV1 -277 308 152 24 53 0 0 chr11 146193637 146193675 -4589878 + AT_rich Low_complexity Low_complexity 1 38 0 1842 136 0 0 chr11 146193679 146193930 -4589623 + AluSx SINE Alu 6 256 -56 22 35 0 0 chr11 146195464 146195493 -4588060 + AT_rich Low_complexity Low_complexity 1 29 0 453 196 9 9 chr11 146196737 146196844 -4586709 + L1 LINE L1 2254 2360 -3786 829 247 46 48 chr11 146196846 146197218 -4586335 - L1M4 LINE L1 -1042 5104 4734 572 284 47 14 chr11 146197204 146197482 -4586071 - L1MDa LINE L1 -2392 3688 3402 * 972 251 5 5 chr11 146197535 146197758 -4585795 + LTR28 LTR ERV1 1 223 -797 497 205 34 42 chr11 146197876 146198102 -4585451 + MER61D LTR ERV1 335 473 -28 566 190 54 135 chr11 146198286 146198557 -4584996 - L1MDa LINE L1 -2756 3324 3069 266 57 0 0 chr11 146198557 146198592 -4584961 + HSMAR1 DNA Mariner 1253 1287 0 566 190 54 135 chr11 146198592 146198845 -4584708 - L1MDa LINE L1 -3011 3069 2797 1670 196 25 30 chr11 146198850 146199217 -4584336 + MLT1A1 LTR MaLR 1 365 0 1786 46 0 5 chr11 146199425 146199641 -4583912 - AluY SINE Alu -78 233 19 1054 265 79 73 chr11 146199641 146200614 -4582939 - L1MDa LINE L1 -4549 1531 553 644 238 52 6 chr11 146200646 146200818 -4582735 - MER58A DNA MER1_type -19 205 26 362 306 181 55 chr11 146200862 146201133 -4582420 - L1MDa LINE L1 -5521 549 245 233 233 14 0 chr11 146201299 146201372 -4582181 - L1MDa LINE L1 -5967 103 30 420 328 75 15 chr11 146201577 146201711 -4581842 - MIR3 SINE MIR -26 182 41 1718 181 7 26 chr11 146201875 146202179 -4581374 + AluJb SINE Alu 2 299 -13 395 261 78 39 chr11 146203033 146203186 -4580367 - MIR SINE MIR -30 232 74 496 257 92 0 chr11 146203221 146203330 -4580223 + MER5B DNA MER1_type 1 119 -59 279 122 0 0 chr11 146203333 146203382 -4580171 + (TATG)n Simple_repeat Simple_repeat 2 50 0 279 211 0 0 chr11 146203389 146203441 -4580112 + MER5B DNA MER1_type 126 177 -1 613 78 0 39 chr11 146203736 146203838 -4579715 - L1PA11 LINE L1 -1 6173 6076 29 47 0 0 chr11 146203963 146204006 -4579547 + AT_rich Low_complexity Low_complexity 1 43 0 214 280 80 70 chr11 146204006 146204106 -4579447 + L2 LINE L2 3176 3276 -37 252 315 65 9 chr11 146204117 146204225 -4579328 + L2 LINE L2 3151 3264 -8 203 321 104 9 chr11 146204482 146204588 -4578965 + MER5B DNA MER1_type 63 178 0 682 175 9 0 chr11 146205071 146205185 -4578368 + FLAM_C SINE Alu 3 117 -16 237 160 60 0 chr11 146205924 146205974 -4577579 + CT-rich Low_complexity Low_complexity 2 54 0 243 266 16 0 chr11 146206614 146206678 -4576875 + CT-rich Low_complexity Low_complexity 2 66 0 350 262 8 25 chr11 146206837 146206959 -4576594 + (TATATG)n Simple_repeat Simple_repeat 6 125 0 425 205 36 0 chr11 146208003 146208086 -4575467 + MER45C DNA AcHobo 2 87 -866 335 263 114 59 chr11 146208319 146208555 -4574998 + MER45C DNA AcHobo 327 575 -378 22 0 0 0 chr11 146208842 146208864 -4574689 + AT_rich Low_complexity Low_complexity 1 22 0 239 389 69 0 chr11 146209680 146209811 -4573742 + L2 LINE L2 3133 3272 0 198 171 0 0 chr11 146209813 146209854 -4573699 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 471 286 6 56 chr11 146210027 146210188 -4573365 - L2 LINE L2 -5 3308 3156 832 319 111 33 chr11 146210210 146210749 -4572804 - L2 LINE L2 -2479 835 255 437 278 154 19 chr11 146211019 146211181 -4572372 + MIR3 SINE MIR 4 187 -21 245 305 213 6 chr11 146211307 146211481 -4572072 + MIR SINE MIR 50 259 -3 252 220 18 28 chr11 146212290 146212399 -4571154 + (CATATA)n Simple_repeat Simple_repeat 2 109 0 221 296 122 20 chr11 146212823 146212921 -4570632 - L2 LINE L2 -1 3312 3205 508 315 20 50 chr11 146212987 146213187 -4570366 + MIR3 SINE MIR 14 207 -1 340 267 48 9 chr11 146214085 146214190 -4569363 - MER5A DNA MER1_type -77 112 4 247 251 171 51 chr11 146214318 146214493 -4569060 - L3b LINE CR1 -208 1375 1180 773 219 24 12 chr11 146215512 146215676 -4567877 - FAM SINE Alu -9 166 1 311 301 36 105 chr11 146215811 146216030 -4567523 + MIR SINE MIR 38 241 -21 280 214 43 43 chr11 146216255 146216325 -4567228 - L2 LINE L2 -17 3255 3186 216 86 0 0 chr11 146216760 146216795 -4566758 + (T)n Simple_repeat Simple_repeat 1 35 0 1144 192 114 52 chr11 146216796 146217139 -4566414 + MLT1A1 LTR MaLR 2 365 0 22 99 0 0 chr11 146217279 146217350 -4566203 + AT_rich Low_complexity Low_complexity 1 71 0 2070 128 3 3 chr11 146217350 146217638 -4565915 - AluSq SINE Alu -22 291 4 190 206 187 56 chr11 146219745 146219852 -4563701 + MIR SINE MIR 126 246 -16 214 378 45 0 chr11 146220721 146220832 -4562721 + MIR SINE MIR 14 129 -133 2289 60 4 0 chr11 146220900 146221222 -4562331 + AluY SINE Alu 1 323 0 22 35 0 0 chr11 146221324 146221353 -4562200 + AT_rich Low_complexity Low_complexity 1 29 0 518 293 58 16 chr11 146221969 146222157 -4561396 + MIR SINE MIR 32 227 -35 25 31 0 0 chr11 146222174 146222206 -4561347 + AT_rich Low_complexity Low_complexity 1 32 0 504 250 115 14 chr11 146222870 146223018 -4560535 - MIR SINE MIR -28 234 72 197 369 28 86 chr11 146223563 146223853 -4559700 + L2 LINE L2 3000 3272 0 2681 32 3 0 chr11 146223937 146224246 -4559307 + AluY SINE Alu 1 310 -1 2531 59 0 0 chr11 146225401 146225704 -4557849 + AluY SINE Alu 1 303 -8 3605 126 0 26 chr11 146225815 146226355 -4557198 + MER1A DNA MER1_type 2 527 0 1395 188 53 16 chr11 146229017 146229320 -4554233 + L1MCa LINE L1 21 334 -6092 592 169 0 73 chr11 146229351 146229487 -4554066 - FLAM_A SINE Alu 0 142 17 7126 226 79 22 chr11 146229496 146234336 -4549217 + L1MCa LINE L1 512 5683 -743 4298 150 7 12 chr11 146234348 146235107 -4548446 + Tigger1 DNA MER2_type 1661 2415 -3 578 258 60 31 chr11 146235657 146235975 -4547578 + L1MC4a LINE L1 6246 6572 -1236 309 224 13 0 chr11 146236123 146236199 -4547354 + MER94 DNA DNA 3 79 -55 235 252 252 0 chr11 146236434 146236561 -4546992 + MIR SINE MIR 104 262 0 186 43 0 0 chr11 146237619 146237642 -4545911 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 332 335 65 20 chr11 146237711 146237956 -4545597 - HAL1 LINE L1 -21 2486 2231 1653 255 85 80 chr11 146238021 146239321 -4544232 - HAL1 LINE L1 -302 2205 896 2363 57 27 0 chr11 146239321 146239622 -4543931 - AluY SINE Alu -2 309 1 1653 255 85 80 chr11 146239622 146239777 -4543776 - HAL1 LINE L1 -1611 896 743 349 367 49 49 chr11 146239927 146240153 -4543400 - HAL1 LINE L1 -1879 628 403 1760 109 0 0 chr11 146240260 146240498 -4543055 + AluSg/x SINE Alu 67 304 -8 1084 133 67 5 chr11 146240572 146240767 -4542786 - L1PA16 LINE L1 -4 6162 5956 255 105 0 123 chr11 146240769 146240797 -4542756 - MER53 DNA DNA -137 52 33 1183 95 6 0 chr11 146240797 146240965 -4542588 - L1PB1 LINE L1 0 6151 5983 255 105 0 123 chr11 146240965 146240993 -4542560 - MER53 DNA DNA -156 33 3 316 274 82 55 chr11 146241013 146241268 -4542285 - HAL1 LINE L1 -2151 356 95 385 321 102 57 chr11 146241415 146241854 -4541699 + HAL1 LINE L1 5 463 -2044 816 256 108 81 chr11 146241959 146242736 -4540817 + HAL1 LINE L1 572 1369 -1138 435 235 0 0 chr11 146242742 146242861 -4540692 + (CA)n Simple_repeat Simple_repeat 1 119 0 356 129 0 16 chr11 146243001 146243063 -4540490 + HAL1 LINE L1 1544 1604 -903 196 295 13 13 chr11 146243121 146243199 -4540354 - MER5A DNA MER1_type -103 86 9 319 227 0 23 chr11 146243503 146243591 -4539962 + HAL1 LINE L1 2027 2112 -395 405 287 53 29 chr11 146243715 146243924 -4539629 + HAL1 LINE L1 2290 2503 -4 183 80 0 0 chr11 146244634 146244659 -4538894 + (T)n Simple_repeat Simple_repeat 1 25 0 210 156 0 0 chr11 146244985 146245030 -4538523 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 315 339 16 39 chr11 146245037 146245164 -4538389 - L2 LINE L2 0 3272 3149 302 344 99 0 chr11 146245176 146245327 -4538226 - MER5A DNA MER1_type -23 166 1 787 217 16 48 chr11 146245788 146245977 -4537576 - MER5A DNA MER1_type 0 189 7 330 230 62 106 chr11 146247125 146247238 -4536315 - MER5B DNA MER1_type -1 177 81 557 261 8 8 chr11 146247245 146247375 -4536178 + MER5A DNA MER1_type 19 148 -41 247 200 31 46 chr11 146247369 146247434 -4536119 - MER5A DNA MER1_type -30 159 96 * 1024 175 136 91 chr11 146247564 146247850 -4535703 + AluJo SINE Alu 1 299 -3 423 335 66 10 chr11 146247872 146248069 -4535484 - MIR SINE MIR -39 223 16 306 98 0 0 chr11 146251195 146251246 -4532307 + (A)n Simple_repeat Simple_repeat 1 51 0 3480 223 47 21 chr11 146253091 146254353 -4529200 - L1MB7 LINE L1 -10 6174 4840 4050 146 103 13 chr11 146254353 146255111 -4528442 - LTR1B LTR ERV1 0 826 1 3480 223 47 21 chr11 146255111 146255738 -4527815 - L1MB7 LINE L1 -1344 4840 4231 414 230 32 0 chr11 146255808 146255934 -4527619 - Charlie1a DNA MER1_type -1045 410 281 1084 150 0 0 chr11 146255952 146256112 -4527441 - AluSc SINE Alu -6 303 144 620 263 81 5 chr11 146256165 146256351 -4527202 - Charlie1a DNA MER1_type -1250 205 6 297 378 24 0 chr11 146259568 146259695 -4523858 + L2 LINE L2 3182 3311 -2 22 0 0 0 chr11 146259831 146259853 -4523700 + AT_rich Low_complexity Low_complexity 1 22 0 1891 118 0 83 chr11 146260941 146261254 -4522299 + AluSx SINE Alu 14 300 -12 1948 145 54 106 chr11 146261610 146261921 -4521632 + LTR32 LTR ERVL 15 294 -177 4255 64 0 12 chr11 146261921 146262483 -4521070 - L1PA6 LINE L1 0 6154 5600 1948 145 54 106 chr11 146262483 146262653 -4520900 + LTR32 LTR ERVL 294 471 0 282 73 0 0 chr11 146262862 146262909 -4520644 + (TG)n Simple_repeat Simple_repeat 1 88 0 282 73 0 0 chr11 146262909 146262950 -4520603 + (TG)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr11 146264548 146264571 -4518982 + AT_rich Low_complexity Low_complexity 1 23 0 736 304 108 29 chr11 146265209 146265617 -4517936 + L3 LINE CR1 713 1152 -425 275 206 20 108 chr11 146266362 146266464 -4517089 - MIR SINE MIR -75 187 95 335 281 123 35 chr11 146267142 146267313 -4516240 - MIR3 SINE MIR -10 198 13 26 30 0 0 chr11 146267740 146267773 -4515780 + AT_rich Low_complexity Low_complexity 1 33 0 25068 32 0 3 chr11 146267812 146271642 -4511911 - L1PA3 LINE L1 0 6155 2335 536 66 0 0 chr11 146271711 146271787 -4511766 + L1P LINE L1 3654 3729 -2417 675 299 56 9 chr11 146272286 146272517 -4511036 + MIR SINE MIR 19 260 -2 351 208 54 12 chr11 146273471 146273639 -4509914 + (TA)n Simple_repeat Simple_repeat 1 175 0 1445 195 72 32 chr11 146273642 146274016 -4509537 + MSTD LTR MaLR 7 395 -1 231 114 0 0 chr11 146274016 146274051 -4509502 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 423 0 0 0 chr11 146274056 146274103 -4509450 + (TG)n Simple_repeat Simple_repeat 2 48 0 292 315 0 0 chr11 146274104 146274196 -4509357 + (TA)n Simple_repeat Simple_repeat 1 92 0 222 182 68 0 chr11 146275719 146275763 -4507790 - L2 LINE L2 -12 3260 3214 21 0 0 0 chr11 146276083 146276104 -4507449 + AT_rich Low_complexity Low_complexity 1 21 0 229 321 80 0 chr11 146276324 146276436 -4507117 - MIR3 SINE MIR -7 201 81 26 0 0 0 chr11 146276765 146276791 -4506762 + AT_rich Low_complexity Low_complexity 1 26 0 290 184 66 0 chr11 146276792 146276868 -4506685 - L1MA9 LINE L1 -22 6290 6210 183 80 0 0 chr11 146277008 146277033 -4506520 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3422 189 98 19 chr11 146277246 146278033 -4505520 - MER21B LTR ERV1 -14 849 1 705 331 134 21 chr11 146278066 146278728 -4504825 + L2 LINE L2 883 1619 -1695 353 282 110 62 chr11 146278835 146278867 -4504686 - L2 LINE L2 -576 2738 2709 1964 108 22 60 chr11 146278867 146279181 -4504372 - AluSg SINE Alu -8 302 1 353 282 110 62 chr11 146279181 146279357 -4504196 - L2 LINE L2 -605 2709 2520 1303 242 0 8 chr11 146279382 146279642 -4503911 - AluJo SINE Alu -54 258 1 370 318 111 52 chr11 146279650 146279993 -4503560 - L2 LINE L2 -777 2537 2175 415 311 53 43 chr11 146280453 146280890 -4502663 - L1ME3A LINE L1 -287 5883 5443 1190 338 127 19 chr11 146280907 146282010 -4501543 + L2 LINE L2 1826 3057 -256 683 301 70 35 chr11 146282660 146283059 -4500494 - LTR33 LTR ERVL -108 413 1 24 0 0 0 chr11 146283385 146283409 -4500144 + AT_rich Low_complexity Low_complexity 1 24 0 228 67 0 0 chr11 146283447 146283477 -4500076 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 1164 194 16 39 chr11 146283478 146283787 -4499766 - Tigger1 DNA MER2_type -1 2417 2116 * 1235 146 25 46 chr11 146283780 146284019 -4499534 - THE1B LTR MaLR -130 234 1 9882 97 63 3 chr11 146284019 146285510 -4498043 - THE1B-int LTR MaLR 0 1580 1 2070 125 63 26 chr11 146285510 146285861 -4497692 - THE1B LTR MaLR 0 364 1 7351 151 35 23 chr11 146285863 146287238 -4496315 - Tigger1 DNA MER2_type -747 1671 278 4590 91 41 0 chr11 146287238 146287879 -4495674 - PABL_B LTR ERV1 0 667 1 7351 151 35 23 chr11 146287879 146287911 -4495642 - Tigger1 DNA MER2_type -2140 278 248 359 244 112 53 chr11 146287982 146288355 -4495198 - L1 LINE L1 -1637 4509 4080 185 233 48 136 chr11 146288415 146288518 -4495035 - MIR3 SINE MIR -5 203 110 473 161 45 0 chr11 146288537 146288692 -4494861 + (CAGAGA)n Simple_repeat Simple_repeat 2 163 0 333 0 0 0 chr11 146289815 146289852 -4493701 + (T)n Simple_repeat Simple_repeat 1 37 0 2025 152 0 29 chr11 146290147 146290462 -4493091 + AluSx SINE Alu 1 306 -6 820 333 92 4 chr11 146291278 146291743 -4491810 + LTR33 LTR ERVL 3 508 -13 1528 139 4 4 chr11 146292263 146292493 -4491060 + AluSg/x SINE Alu 81 310 -2 252 284 21 50 chr11 146292506 146292647 -4490906 - MER103 DNA DNA -11 155 19 1885 123 0 0 chr11 146293159 146293428 -4490125 + AluSc SINE Alu 1 269 -40 252 0 0 0 chr11 146293437 146293465 -4490088 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 955 124 43 0 chr11 146293991 146294152 -4489401 - L1MB1 LINE L1 -1 6167 6000 242 233 0 17 chr11 146295500 146295560 -4487993 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 1731 140 53 37 chr11 146296131 146296683 -4486870 + MER51A LTR ERV1 1 634 0 4321 102 13 166 chr11 146296684 146298268 -4485285 - pTR5 LTR ERV1 0 2606 1524 287 340 55 35 chr11 146298791 146298991 -4484562 + MIR SINE MIR 2 205 -57 323 278 89 0 chr11 146299998 146300088 -4483465 - MIR SINE MIR -61 201 104 216 0 0 0 chr11 146301074 146301098 -4482455 + (T)n Simple_repeat Simple_repeat 1 24 0 838 201 83 52 chr11 146302600 146302829 -4480724 + MSTB LTR MaLR 1 236 -192 926 166 50 0 chr11 146302892 146303073 -4480480 + MSTB LTR MaLR 237 426 0 782 289 96 19 chr11 146303129 146303493 -4480060 - MLT1I LTR MaLR -3 406 15 24 85 0 0 chr11 146304377 146304436 -4479117 + AT_rich Low_complexity Low_complexity 1 59 0 1854 140 0 47 chr11 146305143 146305464 -4478089 + AluJb SINE Alu 1 306 -6 22 0 0 0 chr11 146305620 146305642 -4477911 + AT_rich Low_complexity Low_complexity 1 22 0 327 271 31 0 chr11 146305684 146305780 -4477773 + MIR SINE MIR 53 151 -111 1337 189 119 57 chr11 146305997 146306368 -4477185 - MSTD LTR MaLR 0 396 3 264 318 65 29 chr11 146306676 146306846 -4476707 - MIR SINE MIR -44 218 43 552 210 55 39 chr11 146307176 146307357 -4476196 - L1MC2 LINE L1 -9 6335 6152 592 186 48 162 chr11 146307380 146307714 -4475839 - L1ME3A LINE L1 0 6170 5875 2586 183 59 5 chr11 146307725 146308287 -4475266 - L1MC1 LINE L1 0 6613 6022 309 244 73 49 chr11 146308554 146308677 -4474876 - L1ME4a LINE L1 -5 6116 5991 11637 186 25 10 chr11 146308678 146312960 -4470593 - L1PB1 LINE L1 0 6867 2473 2189 123 0 3 chr11 146312960 146313268 -4470285 + AluSc SINE Alu 1 307 -2 11637 186 25 10 chr11 146313268 146314367 -4469186 - L1PB1 LINE L1 -4394 2473 1392 2662 204 26 4 chr11 146314437 146315551 -4468002 - L1MC1 LINE L1 -579 6034 4897 10530 130 8 3 chr11 146315559 146317980 -4465573 + L1PA8A LINE L1 3700 6129 -2 818 166 46 116 chr11 146318006 146318247 -4465306 - L1MC1 LINE L1 -5499 927 704 1883 174 45 166 chr11 146318248 146319057 -4464496 - LTR8A LTR ERV1 0 727 17 1676 207 72 0 chr11 146319057 146319390 -4464163 - L1MC1 LINE L1 -5719 707 351 1978 221 73 29 chr11 146319399 146319904 -4463649 - MER54A LTR ERVL -16 885 79 1481 230 35 6 chr11 146319954 146320297 -4463256 - L1MC1 LINE L1 -6071 355 3 * 6030 199 94 34 chr11 146320283 146321133 -4462420 + L1MC3 LINE L1 6022 6820 -965 2282 136 19 16 chr11 146321133 146321507 -4462046 + THE1C LTR MaLR 1 375 0 6030 199 94 34 chr11 146321507 146322312 -4461241 + L1MC3 LINE L1 6820 7775 -10 278 329 0 14 chr11 146322936 146323009 -4460544 - L2 LINE L2 -52 3220 3149 665 85 0 0 chr11 146323375 146323469 -4460084 - AluY SINE Alu -11 300 207 198 167 0 0 chr11 146326455 146326491 -4457062 + (TA)n Simple_repeat Simple_repeat 1 36 0 1838 49 0 5 chr11 146326491 146326714 -4456839 - AluY SINE Alu 0 311 90 351 347 52 26 chr11 146327835 146328028 -4455525 + MIR SINE MIR 18 215 -47 181 301 14 27 chr11 146328606 146328679 -4454874 - L2 LINE L2 0 3313 3242 453 251 201 0 chr11 146329203 146329382 -4454171 + MIR SINE MIR 21 235 -27 2228 110 0 0 chr11 146329486 146329786 -4453767 - AluY SINE Alu -11 300 1 195 42 0 0 chr11 146330131 146330155 -4453398 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 330 345 5 0 chr11 146330301 146330501 -4453052 - L1MC4a LINE L1 -1940 5868 5668 256 293 0 0 chr11 146330920 146330978 -4452575 + L2 LINE L2 2702 2759 -555 189 244 37 24 chr11 146331302 146331384 -4452169 + MIR SINE MIR 124 206 -56 1597 135 4 0 chr11 146331480 146331717 -4451836 + AluY SINE Alu 68 305 -6 391 240 0 62 chr11 146331741 146331837 -4451716 + MER58B DNA MER1_type 2 91 -250 885 211 39 104 chr11 146332504 146332784 -4450769 + MER58B DNA MER1_type 80 341 0 237 302 23 0 chr11 146332804 146332890 -4450663 + (TATATG)n Simple_repeat Simple_repeat 6 93 0 1201 61 0 0 chr11 146333066 146333214 -4450339 + AluYa8 SINE Alu 160 307 -3 796 243 0 23 chr11 146333493 146333670 -4449883 - MER5A DNA MER1_type 0 189 17 207 0 0 0 chr11 146333823 146333846 -4449707 + (T)n Simple_repeat Simple_repeat 1 23 0 3570 72 7 55 chr11 146335646 146336453 -4447100 + L1PA8 LINE L1 5229 6155 -17 298 340 93 19 chr11 146337688 146337850 -4445703 + MIR SINE MIR 31 204 -58 205 288 13 174 chr11 146339528 146339764 -4443789 - MIR3 SINE MIR -3 205 8 197 293 216 9 chr11 146340102 146340218 -4443335 + MIR SINE MIR 118 257 -5 2206 114 0 0 chr11 146340396 146340685 -4442868 + AluSp SINE Alu 1 289 -24 593 260 0 6 chr11 146340691 146340872 -4442681 + (TA)n Simple_repeat Simple_repeat 1 180 0 828 187 191 57 chr11 146341261 146341544 -4442009 - MER58B DNA MER1_type -20 321 1 408 67 0 0 chr11 146342150 146342210 -4441343 + (GA)n Simple_repeat Simple_repeat 1 60 0 212 216 20 0 chr11 146342329 146342380 -4441173 + MIR3 SINE MIR 150 201 -7 301 324 35 28 chr11 146343452 146343597 -4439956 + MIR SINE MIR 11 156 -106 492 274 45 132 chr11 146343617 146343883 -4439670 - MLT1L LTR MaLR -18 597 250 394 285 97 46 chr11 146345806 146346140 -4437413 - MLT1I LTR MaLR -8 424 87 201 315 0 27 chr11 146346292 146346365 -4437188 + MIR SINE MIR 160 230 -32 499 306 23 86 chr11 146348265 146348660 -4434893 + HAL1b LINE L1 55 424 -924 2616 225 47 19 chr11 146348680 146349134 -4434419 + L1MC4 LINE L1 7176 7659 -383 2206 111 51 17 chr11 146349134 146349484 -4434069 + THE1B LTR MaLR 1 362 -2 2616 225 47 19 chr11 146349484 146349752 -4433801 + L1MC4 LINE L1 7659 7918 -124 254 250 13 26 chr11 146349752 146349828 -4433725 + (TATATG)n Simple_repeat Simple_repeat 6 80 0 324 234 73 32 chr11 146349834 146349958 -4433595 + L1MC4 LINE L1 7914 8042 0 2199 119 3 0 chr11 146349968 146350279 -4433274 + AluSx SINE Alu 1 312 0 212 295 0 0 chr11 146350460 146350521 -4433032 + (CA)n Simple_repeat Simple_repeat 2 62 0 239 331 0 75 chr11 146350892 146351025 -4432528 + MIR SINE MIR 32 127 -81 1768 209 88 34 chr11 146351468 146351946 -4431607 - MLT1D LTR MaLR -1 504 1 205 313 78 16 chr11 146352513 146352577 -4430976 - L3b LINE CR1 -25 1558 1491 1674 171 26 7 chr11 146353157 146353461 -4430092 - AluSx SINE Alu -2 310 1 517 223 40 121 chr11 146353534 146353807 -4429746 + MER112 DNA MER1_type 5 255 -1 279 97 39 65 chr11 146353829 146353984 -4429569 + (TATAG)n Simple_repeat Simple_repeat 2 152 0 257 287 206 37 chr11 146354000 146354136 -4429417 + MER5A DNA MER1_type 28 186 -3 434 257 109 13 chr11 146354181 146354558 -4428995 - Charlie2 DNA MER1_type -37 2825 2413 25 51 0 0 chr11 146354584 146354623 -4428930 + AT_rich Low_complexity Low_complexity 1 39 0 477 257 28 91 chr11 146354761 146355014 -4428539 - Charlie2 DNA MER1_type -2625 237 1 799 284 19 51 chr11 146356440 146356697 -4426856 - MLT1K LTR MaLR -7 581 333 367 312 64 12 chr11 146357002 146357193 -4426360 + MIR SINE MIR 60 259 -3 376 338 0 30 chr11 146357320 146357453 -4426100 + MIR3 SINE MIR 43 171 -37 213 39 0 0 chr11 146357453 146357479 -4426074 + (TC)n Simple_repeat Simple_repeat 2 27 0 567 302 49 8 chr11 146357532 146357790 -4425763 - MLT1L LTR MaLR -5 610 240 319 267 11 11 chr11 146357901 146357991 -4425562 + MER94 DNA DNA 35 124 -10 429 276 148 29 chr11 146357992 146358202 -4425351 - MLT1L LTR MaLR -375 240 6 2373 218 29 22 chr11 146358414 146358959 -4424594 + MLT2B3 LTR ERVL 6 554 0 308 302 42 0 chr11 146359829 146359925 -4423628 + MIR SINE MIR 118 217 -45 21 0 0 0 chr11 146361599 146361620 -4421933 + AT_rich Low_complexity Low_complexity 1 21 0 2464 138 43 10 chr11 146363989 146364403 -4419150 + MSTA LTR MaLR 1 428 0 1810 256 128 83 chr11 146364601 146365603 -4417950 + L1MDa LINE L1 15 1130 -5410 1760 250 23 69 chr11 146365606 146366156 -4417397 - MLT2B3 LTR ERVL 0 554 1 3969 216 61 80 chr11 146366160 146368328 -4415225 + L1MDa LINE L1 1132 3239 -3301 2056 134 3 0 chr11 146368328 146368626 -4414927 + AluSx SINE Alu 1 299 -13 3969 216 61 80 chr11 146368626 146368926 -4414627 + L1MDa LINE L1 3239 3543 -2997 348 201 67 13 chr11 146368965 146369114 -4414439 - L1MCa LINE L1 -2829 3597 3441 4901 233 65 41 chr11 146369252 146369413 -4414140 - L1M4 LINE L1 -822 5324 5168 7569 28 0 2 chr11 146369413 146370621 -4412932 - L1PA3 LINE L1 -1 6154 4942 4901 233 65 41 chr11 146370621 146371888 -4411665 - L1M4 LINE L1 -978 5168 3837 2065 120 7 0 chr11 146371888 146372171 -4411382 - AluSc SINE Alu -24 285 1 4901 233 65 41 chr11 146372171 146372647 -4410906 - L1M4 LINE L1 -2309 3837 3374 4269 219 147 89 chr11 146372661 146374901 -4408652 - L1MCa LINE L1 -4052 2374 4 883 274 115 52 chr11 146374931 146375388 -4408165 - L1M2 LINE L1 -2216 3999 3572 1683 189 0 3 chr11 146375388 146375673 -4407880 - AluJb SINE Alu -28 284 1 883 274 115 52 chr11 146375673 146375972 -4407581 - L1M2 LINE L1 -2643 3572 3293 1065 258 122 11 chr11 146375972 146376341 -4407212 + MLT2D LTR ERVL 1 410 -4 883 274 115 52 chr11 146376341 146376611 -4406942 - L1M2 LINE L1 -2922 3293 2907 407 251 71 11 chr11 146376651 146376834 -4406719 - L1M2 LINE L1 -3669 2546 2353 409 292 80 31 chr11 146376959 146377696 -4405857 - L1M2 LINE L1 -4125 2271 1477 1458 221 28 39 chr11 146377817 146378175 -4405378 + MLT1A1 LTR MaLR 1 354 -11 287 161 18 18 chr11 146378362 146378418 -4405135 + MLT1E2 LTR MaLR 26 81 -545 251 237 32 21 chr11 146378604 146378697 -4404856 - L1MEd LINE L1 -5101 1018 925 249 250 0 0 chr11 146379337 146379393 -4404160 + MLT1E2 LTR MaLR 26 81 -545 258 331 101 57 chr11 146379481 146380046 -4403507 + L1M4 LINE L1 28 617 -5925 364 285 91 76 chr11 146380056 146380319 -4403234 + L1M4 LINE L1 592 858 -5684 201 158 0 0 chr11 146380358 146380396 -4403157 + A-rich Low_complexity Low_complexity 1 38 0 365 347 91 51 chr11 146380469 146380800 -4402753 + L1M4 LINE L1 274 617 -5925 364 285 91 76 chr11 146380810 146381073 -4402480 + L1M4 LINE L1 592 858 -5684 184 75 25 25 chr11 146381112 146381152 -4402401 + (TAAAAA)n Simple_repeat Simple_repeat 1 40 0 196 348 204 38 chr11 146381272 146382800 -4400753 - L2 LINE L2 -366 2948 1167 2501 113 56 52 chr11 146382862 146383288 -4400265 + MSTC LTR MaLR 1 428 0 268 240 20 100 chr11 146383317 146383417 -4400136 + L2 LINE L2 3185 3276 -37 641 322 97 24 chr11 146383674 146384047 -4399506 - MLT1L LTR MaLR -10 605 206 1935 151 0 0 chr11 146384827 146385132 -4398421 + AluSc SINE Alu 5 309 0 2275 136 0 14 chr11 146385515 146385876 -4397677 - MER47A DNA MER2_type -5 361 6 1690 184 9 30 chr11 146386633 146386969 -4396584 - MLT1C LTR MaLR 0 467 139 225 0 0 0 chr11 146386984 146387009 -4396544 + (T)n Simple_repeat Simple_repeat 1 25 0 204 40 0 0 chr11 146387118 146387143 -4396410 + (A)n Simple_repeat Simple_repeat 1 25 0 402 115 0 0 chr11 146387277 146387338 -4396215 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 2043 137 0 0 chr11 146387359 146387666 -4395887 - AluY SINE Alu -4 307 1 1993 133 3 13 chr11 146389298 146389600 -4393953 + AluSx SINE Alu 1 299 -13 213 333 0 15 chr11 146389603 146389669 -4393884 - MIR SINE MIR -149 113 49 735 140 0 0 chr11 146389845 146389952 -4393601 + AluSg/x SINE Alu 190 296 -14 240 339 0 0 chr11 146389955 146390020 -4393533 - MIR SINE MIR -149 113 49 342 0 0 0 chr11 146390549 146390587 -4392966 + (TG)n Simple_repeat Simple_repeat 2 39 0 984 191 29 0 chr11 146390782 146390986 -4392567 - Charlie4 DNA MER1_type 0 1961 1752 725 186 87 17 chr11 146391011 146391183 -4392370 - Charlie4 DNA MER1_type -1757 204 21 2194 125 0 6 chr11 146391528 146391840 -4391713 + AluSg SINE Alu 1 310 0 1940 204 79 17 chr11 146392183 146392649 -4390904 + LTR42 LTR ERVL 1 495 0 1079 194 105 92 chr11 146392686 146393144 -4390409 + LTR37B LTR ERV1 1 464 -4 867 209 0 23 chr11 146393348 146393525 -4390028 - MER5A DNA MER1_type 0 189 17 189 74 0 0 chr11 146393669 146393696 -4389857 + (T)n Simple_repeat Simple_repeat 1 27 0 2130 109 16 3 chr11 146393884 146394188 -4389365 - AluSx SINE Alu -4 308 1 467 209 29 9 chr11 146394190 146394295 -4389258 - MLT1C LTR MaLR -263 127 21 385 267 198 11 chr11 146394795 146394982 -4388571 - MIR SINE MIR 0 262 41 225 0 0 0 chr11 146395607 146395632 -4387921 + (TG)n Simple_repeat Simple_repeat 2 26 0 413 272 47 12 chr11 146396270 146396439 -4387114 - L1ME3A LINE L1 -9 6161 5987 2233 105 3 0 chr11 146396981 146397275 -4386278 + AluSc SINE Alu 1 295 -14 578 272 80 44 chr11 146398516 146398766 -4384787 + MIR SINE MIR 4 262 0 671 299 23 0 chr11 146399138 146399315 -4384238 + MIR SINE MIR 17 197 -65 987 132 0 16 chr11 146399405 146399587 -4383966 + (TA)n Simple_repeat Simple_repeat 2 180 0 5951 230 49 34 chr11 146399826 146400229 -4383324 - L1MC3 LINE L1 -743 5821 5426 2471 44 0 7 chr11 146400229 146400527 -4383026 - AluY SINE Alu -14 297 2 5951 230 49 34 chr11 146400527 146404354 -4379199 - L1MC3 LINE L1 -1138 5426 2667 2438 207 38 64 chr11 146404375 146405737 -4377816 - L1MC3 LINE L1 -4425 2139 723 330 217 0 0 chr11 146406182 146406242 -4377311 - L2 LINE L2 -1 3271 3212 276 350 25 13 chr11 146406243 146406402 -4377151 + MIR SINE MIR 69 228 -34 21150 200 18 23 chr11 146407400 146412595 -4370958 + L1PA11 LINE L1 8 5207 -1254 1023 41 0 0 chr11 146412603 146412726 -4370827 - AluY SINE Alu -2 309 187 5845 107 21 23 chr11 146412724 146414003 -4369550 + L1PA11 LINE L1 5200 6488 -1 320 350 57 41 chr11 146415064 146415258 -4368295 - MIR SINE MIR -50 212 16 254 29 29 0 chr11 146415777 146415812 -4367741 + (GA)n Simple_repeat Simple_repeat 1 36 0 252 59 0 0 chr11 146417804 146417838 -4365715 + (CA)n Simple_repeat Simple_repeat 2 35 0 360 355 96 0 chr11 146418204 146418401 -4365152 - L2 LINE L2 -194 3078 2863 26 30 0 0 chr11 146418448 146418481 -4365072 + AT_rich Low_complexity Low_complexity 1 33 0 608 296 78 33 chr11 146418522 146418792 -4364761 - L2 LINE L2 -819 2495 2214 885 271 40 8 chr11 146418862 146419113 -4364440 + MIR SINE MIR 1 259 -3 573 302 54 10 chr11 146419164 146419369 -4364184 - L2 LINE L2 -1211 2103 1890 252 346 80 77 chr11 146419413 146420014 -4363539 - L2 LINE L2 -1651 1663 1061 2186 75 0 7 chr11 146421159 146421438 -4362115 + AluY SINE Alu 1 277 -34 201 39 0 0 chr11 146421439 146421465 -4362088 + (CA)n Simple_repeat Simple_repeat 1 26 0 209 320 64 0 chr11 146422089 146422167 -4361386 + MIR SINE MIR 71 153 -109 194 227 30 30 chr11 146422283 146422349 -4361204 - MIR SINE MIR -6 256 191 1914 186 11 8 chr11 146423790 146424160 -4359393 + MLT2D LTR ERVL 1 371 -43 388 125 81 16 chr11 146424163 146424540 -4359013 + (TAGA)n Simple_repeat Simple_repeat 1 401 0 311 172 0 31 chr11 146424542 146424606 -4358947 + MLT2D LTR ERVL 353 414 0 725 298 61 8 chr11 146425209 146425454 -4358099 + MIR SINE MIR 3 260 -2 1030 281 65 16 chr11 146427143 146427510 -4356043 + LTR16A LTR ERVL 56 440 -10 232 280 60 40 chr11 146427520 146427620 -4355933 - MIR SINE MIR -5 257 156 3414 197 25 25 chr11 146427656 146428372 -4355181 - MER44D DNA MER2_type -8 597 10 507 222 43 0 chr11 146428731 146428848 -4354705 + MIR SINE MIR 115 236 -26 2261 162 18 48 chr11 146429139 146429577 -4353976 - MSTB LTR MaLR 0 426 2 216 265 15 15 chr11 146429711 146429779 -4353774 + MIR SINE MIR 195 262 0 204 204 163 0 chr11 146429776 146429825 -4353728 - MIR SINE MIR -106 156 100 * 226 250 44 0 chr11 146432139 146432207 -4351346 - MLT1L LTR MaLR -342 273 203 626 147 0 38 chr11 146432334 146432518 -4351035 + (GGAA)n Simple_repeat Simple_repeat 4 180 0 307 91 0 0 chr11 146432519 146432563 -4350990 - MLT2A1 LTR ERVL -165 279 236 290 360 50 7 chr11 146432611 146432792 -4350761 + MIR SINE MIR 20 206 -56 2259 117 0 0 chr11 146433144 146433453 -4350100 + AluSg SINE Alu 1 309 -1 269 277 69 46 chr11 146433601 146433731 -4349822 + MIR SINE MIR 88 220 -42 1003 118 0 0 chr11 146434337 146434472 -4349081 + AluSq/x SINE Alu 1 135 -177 2300 114 0 0 chr11 146434472 146434779 -4348774 + AluSx SINE Alu 1 307 -5 1913 271 68 70 chr11 146434789 146434842 -4348711 - L1MC4 LINE L1 -4 8038 7986 1865 117 12 0 chr11 146434842 146435126 -4348427 + AluSx SINE Alu 23 309 0 1913 271 68 70 chr11 146435126 146436434 -4347119 - L1MC4 LINE L1 -56 7986 6678 3323 96 11 0 chr11 146436562 146437010 -4346543 + MLT2A2 LTR ERVL 1 453 0 674 297 112 18 chr11 146437275 146437946 -4345607 - L2 LINE L2 0 3313 2596 400 246 42 84 chr11 146438033 146438175 -4345378 - L2 LINE L2 -5 3267 3132 903 45 0 0 chr11 146439007 146439119 -4344434 + (TTCC)n Simple_repeat Simple_repeat 3 114 0 1862 128 21 7 chr11 146439119 146439400 -4344153 - AluSx SINE Alu -27 285 1 432 158 0 0 chr11 146442936 146443018 -4340535 - L1MA7 LINE L1 -2 6289 6208 24 32 0 0 chr11 146443041 146443072 -4340481 + AT_rich Low_complexity Low_complexity 1 31 0 303 298 35 45 chr11 146444241 146444439 -4339114 - HAL1 LINE L1 0 2507 2312 296 176 15 0 chr11 146444443 146444511 -4339042 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 207 69 0 0 chr11 146444592 146444621 -4338932 + (CA)n Simple_repeat Simple_repeat 2 30 0 409 235 96 6 chr11 146444680 146444846 -4338707 - HAL1 LINE L1 -212 2295 2115 282 375 44 6 chr11 146445074 146445394 -4338159 - HAL1 LINE L1 -702 1805 1474 388 240 124 39 chr11 146445410 146445539 -4338014 + MIR SINE MIR 13 152 -110 273 269 0 0 chr11 146446441 146446508 -4337045 - LTR16B LTR ERVL -4 460 394 331 268 191 12 chr11 146446553 146446721 -4336832 - LTR16B LTR ERVL -266 198 1 180 240 40 0 chr11 146446956 146447006 -4336547 + MIR SINE MIR 91 142 -120 494 296 48 16 chr11 146448027 146448213 -4335340 + MIR SINE MIR 71 262 0 23 0 0 0 chr11 146449059 146449082 -4334471 + AT_rich Low_complexity Low_complexity 1 23 0 244 293 40 20 chr11 146449353 146449452 -4334101 + MIR SINE MIR 156 256 -6 2185 94 4 0 chr11 146449772 146450047 -4333506 + AluSp SINE Alu 1 276 -37 258 81 0 0 chr11 146450052 146450089 -4333464 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 208 161 0 54 chr11 146451464 146451520 -4332033 + A-rich Low_complexity Low_complexity 1 53 0 693 261 88 33 chr11 146451539 146451754 -4331799 - MIR SINE MIR -33 229 3 636 252 121 46 chr11 146451812 146452185 -4331368 - MER93a LTR ERV1 0 402 2 360 0 0 0 chr11 146452575 146452615 -4330938 + (TG)n Simple_repeat Simple_repeat 2 41 0 345 238 41 8 chr11 146452926 146453048 -4330505 - L1M2 LINE L1 -537 5775 5650 23 33 0 0 chr11 146453286 146453316 -4330237 + AT_rich Low_complexity Low_complexity 1 30 0 284 292 25 42 chr11 146453567 146453687 -4329866 + L3b LINE CR1 1268 1385 -198 311 286 250 5 chr11 146455078 146455270 -4328283 + MIR SINE MIR 12 250 -12 190 171 0 0 chr11 146455323 146455358 -4328195 - L2 LINE L2 -5 3308 3274 341 309 48 16 chr11 146455619 146455745 -4327808 + MIR SINE MIR 20 149 -113 2899 176 48 43 chr11 146456751 146457478 -4326075 - L1MB8 LINE L1 0 6178 5448 420 283 80 71 chr11 146458102 146458328 -4325225 - MIR SINE MIR -6 256 29 425 336 74 41 chr11 146460670 146461036 -4322517 + L2 LINE L2 2249 2626 -688 841 224 4 69 chr11 146461555 146461787 -4321766 - MER20 DNA MER1_type -1 218 2 237 178 0 0 chr11 146461838 146461883 -4321670 + GA-rich Low_complexity Low_complexity 3 47 0 429 289 194 15 chr11 146462205 146462406 -4321147 + MIR SINE MIR 14 250 -12 226 246 0 0 chr11 146463729 146463790 -4319763 + LTR66 LTR ERVL 378 438 -172 1053 150 0 0 chr11 146463792 146463972 -4319581 + (TA)n Simple_repeat Simple_repeat 1 180 0 893 162 13 19 chr11 146464301 146464455 -4319098 + FRAM SINE Alu 1 153 -23 688 290 19 19 chr11 146464502 146464716 -4318837 - MIR SINE MIR -30 232 19 10513 172 10 6 chr11 146464873 146467773 -4315780 + L1PA13 LINE L1 3224 6158 -5 1965 253 43 21 chr11 146468003 146468526 -4315027 + L1ME1 LINE L1 5528 6038 -128 2136 119 76 17 chr11 146468526 146468870 -4314683 - THE1B LTR MaLR 0 364 1 11285 105 10 0 chr11 146468870 146470435 -4313118 - THE1B-int LTR MaLR 0 1580 1 2117 109 91 18 chr11 146470435 146470774 -4312779 - THE1B LTR MaLR 0 364 1 1965 253 43 21 chr11 146470774 146470868 -4312685 + L1ME1 LINE L1 6037 6161 -5 2161 193 33 10 chr11 146470943 146471429 -4312124 - L1MB3 LINE L1 0 6183 5687 263 328 227 10 chr11 146471698 146471896 -4311657 - MIR SINE MIR -21 241 1 200 214 89 0 chr11 146473518 146473574 -4309979 - MIR SINE MIR -26 236 176 251 351 61 9 chr11 146474846 146474960 -4308593 - L2 LINE L2 -630 2684 2565 252 115 96 58 chr11 146475007 146475059 -4308494 + MER110A LTR ERV1 101 154 -314 314 278 84 53 chr11 146475752 146476298 -4307255 + L1MEd LINE L1 695 1257 -4862 283 320 64 6 chr11 146476316 146476472 -4307081 + HAL1 LINE L1 1403 1567 -940 283 297 45 7 chr11 146476847 146477002 -4306551 + L1MEd LINE L1 2123 2283 -3846 314 309 59 15 chr11 146477152 146477288 -4306265 + L1MEd LINE L1 2427 2568 -3561 591 143 71 0 chr11 146477289 146477401 -4306152 + L1PA15-16 LINE L1 2505 2624 -4225 10510 34 0 0 chr11 146477427 146479458 -4304095 - L1PA4 LINE L1 -3 6152 4123 414 67 0 8 chr11 146479458 146479513 -4304040 - L1P3 LINE L1 -5821 360 1 6405 209 23 82 chr11 146479513 146481311 -4302242 + L1PA15-16 LINE L1 2615 4412 -2437 924 200 11 0 chr11 146481311 146481491 -4302062 + AluSg/x SINE Alu 131 312 0 6405 209 23 82 chr11 146481491 146481980 -4301573 + L1PA15-16 LINE L1 4412 4929 -1920 * 14970 207 22 60 chr11 146481975 146483040 -4300513 - L1PA15-16 LINE L1 -754 6830 5726 2009 141 7 0 chr11 146483040 146483330 -4300223 + AluSg SINE Alu 1 292 -18 14970 207 22 60 chr11 146483330 146486875 -4296678 - L1PA15-16 LINE L1 -1858 5726 2403 585 321 24 40 chr11 146488094 146488465 -4295088 - L1PA15-16 LINE L1 -7210 371 7 1073 273 68 39 chr11 146488524 146488926 -4294627 - L1M4 LINE L1 -1128 5087 4657 1777 146 31 14 chr11 146488926 146489213 -4294340 + AluSq SINE Alu 1 292 -21 1073 273 68 39 chr11 146489213 146489470 -4294083 - L1M4 LINE L1 -1558 4657 4409 667 251 60 121 chr11 146489471 146489869 -4293684 - MLT1A2 LTR MaLR 0 374 1 6226 254 71 16 chr11 146489869 146491514 -4292039 - MLT1A2-int LTR MaLR 0 1735 1 550 213 14 71 chr11 146491521 146491662 -4291891 - MLT1A1 LTR MaLR -11 385 227 1060 267 101 64 chr11 146491673 146493077 -4290476 - L1MEc LINE L1 -2824 3391 1962 605 309 16 12 chr11 146494270 146494513 -4289040 + HERVL-B1 LTR ERVL 16 259 -5395 1468 195 33 0 chr11 146494513 146494992 -4288561 + L1M1 LINE L1 5082 5572 -728 1852 146 32 3 chr11 146494992 146495300 -4288253 - THE1B LTR MaLR -47 317 1 14197 183 25 9 chr11 146495301 146497926 -4285627 + HERVL-B1 LTR ERVL 3089 5755 -9 2311 211 40 4 chr11 146497928 146498384 -4285169 + MLT2B1 LTR ERVL 1 472 -48 270 0 0 0 chr11 146498390 146498420 -4285133 + (TG)n Simple_repeat Simple_repeat 2 31 0 212 250 0 0 chr11 146498437 146498501 -4285052 + (TA)n Simple_repeat Simple_repeat 1 64 0 244 83 28 0 chr11 146498504 146498540 -4285013 + MLT2B1 LTR ERVL 477 513 -7 24 53 0 0 chr11 146498716 146498754 -4284799 + AT_rich Low_complexity Low_complexity 1 38 0 699 186 47 23 chr11 146499301 146499473 -4284080 + ERVL LTR ERVL 5580 5755 -9 35 41 0 0 chr11 146499790 146499839 -4283714 + AT_rich Low_complexity Low_complexity 1 49 0 1653 153 77 49 chr11 146500144 146500509 -4283044 - THE1C LTR MaLR 0 375 1 200 371 42 68 chr11 146501800 146502107 -4281446 + L2 LINE L2 2909 3207 -65 25 0 0 0 chr11 146502137 146502162 -4281391 + AT_rich Low_complexity Low_complexity 1 25 0 205 198 86 62 chr11 146502335 146502416 -4281137 - L2 LINE L2 0 3272 3190 21 0 0 0 chr11 146503379 146503400 -4280153 + AT_rich Low_complexity Low_complexity 1 21 0 2480 308 99 34 chr11 146503658 146505236 -4278317 - L2 LINE L2 -102 3211 1520 823 205 40 48 chr11 146506137 146506753 -4276800 + MER4C LTR ERV1 3 463 -2 2368 162 60 20 chr11 146506847 146507297 -4276256 - MER31A LTR ERV1 -17 468 1 336 278 33 73 chr11 146507837 146507988 -4275565 - MIR SINE MIR -4 258 114 23 86 0 0 chr11 146508321 146508379 -4275174 + AT_rich Low_complexity Low_complexity 1 58 0 253 150 120 10 chr11 146508959 146509059 -4274494 + L1MEd LINE L1 758 868 -5251 28 48 0 0 chr11 146509139 146509181 -4274372 + AT_rich Low_complexity Low_complexity 1 42 0 31687 76 10 22 chr11 146509194 146514224 -4269329 + L1PA6 LINE L1 816 5770 -384 2407 67 0 10 chr11 146514224 146514522 -4269031 + AluY SINE Alu 1 295 -16 31687 76 10 22 chr11 146514522 146514898 -4268655 + L1PA6 LINE L1 5770 6149 -5 32 57 0 0 chr11 146514947 146515000 -4268553 + AT_rich Low_complexity Low_complexity 1 53 0 553 276 94 45 chr11 146515009 146515274 -4268279 + L1MEd LINE L1 967 1244 -4875 198 103 0 0 chr11 146515354 146515383 -4268170 + (GA)n Simple_repeat Simple_repeat 2 30 0 2392 81 0 3 chr11 146515506 146515802 -4267751 - AluSq SINE Alu -12 301 7 333 288 117 12 chr11 146515832 146516158 -4267395 - L1MEc LINE L1 -4765 1631 1272 252 0 0 0 chr11 146516355 146516383 -4267170 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 322 191 117 0 chr11 146516667 146516761 -4266792 + L1MB8 LINE L1 11 115 -6744 * 1900 87 0 17 chr11 146516759 146517058 -4266495 - L1P LINE L1 -3593 2553 2260 1686 265 132 39 chr11 146517134 146517158 -4266395 + L1MB8 LINE L1 78 98 -6761 2287 105 3 16 chr11 146517158 146517472 -4266081 + AluSq SINE Alu 1 310 -3 1686 265 132 39 chr11 146517472 146518233 -4265320 + L1MB8 LINE L1 98 936 -5923 1205 246 117 47 chr11 146518745 146519584 -4263969 + L1MB8 LINE L1 1206 2151 -4808 3198 77 4 18 chr11 146519584 146520037 -4263516 + L1PA13 LINE L1 5716 6162 -1 1205 246 117 47 chr11 146520037 146520315 -4263238 + L1MB8 LINE L1 2151 2408 -4551 3730 218 36 16 chr11 146520331 146521164 -4262389 - L1MB3 LINE L1 0 6183 5324 1933 125 39 16 chr11 146521164 146521469 -4262084 - AluSx SINE Alu 0 312 1 3730 218 36 16 chr11 146521469 146521754 -4261799 - L1MB3 LINE L1 -859 5324 5046 665 179 66 15 chr11 146521751 146521947 -4261606 - L1MB3 LINE L1 -1577 4569 4364 * 7359 231 60 23 chr11 146522044 146525102 -4258451 + L1MB8 LINE L1 3356 6534 -461 1841 160 49 30 chr11 146525102 146525628 -4257925 - MLT2A2 LTR ERVL 0 554 18 2057 184 19 25 chr11 146525628 146526105 -4257448 + L1MB8 LINE L1 6516 6989 0 225 263 31 31 chr11 146526226 146526386 -4257167 + L1MEc LINE L1 2133 2292 -4104 306 331 60 16 chr11 146526404 146526588 -4256965 + L1MEc LINE L1 2279 2470 -3745 352 236 73 36 chr11 146526593 146526868 -4256685 + L1MEc LINE L1 3188 3472 -2743 266 225 22 22 chr11 146527036 146527125 -4256428 + L1P LINE L1 3610 3698 -2448 1859 237 46 28 chr11 146527170 146527711 -4255842 + MLT2B3 LTR ERVL 2 552 -2 424 253 24 0 chr11 146527731 146527897 -4255656 + L1MEc LINE L1 3351 3520 -2695 2206 262 104 31 chr11 146527936 146530342 -4253211 + L1MEc LINE L1 3656 6239 0 276 377 69 17 chr11 146530762 146530995 -4252558 - L2 LINE L2 -1019 2295 2043 2169 143 0 0 chr11 146530995 146531303 -4252250 + AluSx SINE Alu 1 308 -4 276 377 69 17 chr11 146531303 146531358 -4252195 - L2 LINE L2 -1271 2043 1992 246 376 0 0 chr11 146531401 146531494 -4252059 - MIR3 SINE MIR -13 195 103 433 295 66 11 chr11 146531659 146531842 -4251711 + L2 LINE L2 3120 3312 -1 317 271 103 9 chr11 146532531 146532638 -4250915 - MIR3 SINE MIR -3 205 89 198 118 0 0 chr11 146532903 146532937 -4250616 + (GA)n Simple_repeat Simple_repeat 1 34 0 803 209 0 62 chr11 146534200 146534411 -4249142 - MER20 DNA MER1_type -3 216 19 266 50 25 0 chr11 146534777 146534817 -4248736 + (TC)n Simple_repeat Simple_repeat 2 42 0 207 307 44 70 chr11 146535278 146535392 -4248161 + L2 LINE L2 3154 3264 -8 226 194 0 56 chr11 146535717 146535789 -4247764 + T-rich Low_complexity Low_complexity 5 72 0 296 191 15 0 chr11 146535949 146536017 -4247536 - MER116 DNA Mariner -10 70 2 313 335 33 54 chr11 146536200 146536469 -4247084 + MIR SINE MIR 5 262 0 186 364 78 0 chr11 146537403 146537480 -4246073 - MIR SINE MIR -92 116 34 251 287 112 19 chr11 146537623 146537774 -4245779 - MIR SINE MIR -65 143 31 2466 68 3 0 chr11 146537837 146538147 -4245406 - AluY SINE Alu 0 311 1 187 302 0 0 chr11 146538147 146538190 -4245363 - MIR SINE MIR -142 120 78 287 328 100 11 chr11 146538349 146538529 -4245024 - MIR SINE MIR -23 239 44 291 278 23 45 chr11 146539548 146539626 -4243927 - MER103 DNA DNA -36 130 55 2551 44 10 0 chr11 146539626 146539922 -4243631 + AluY SINE Alu 1 299 -12 291 278 23 45 chr11 146539922 146539976 -4243577 - MER103 DNA DNA -111 55 1 2845 234 32 87 chr11 146540243 146541385 -4242168 + L1MCb LINE L1 110 1189 -4856 42570 36 1 3 chr11 146541390 146547547 -4236006 + L1PA4 LINE L1 8 6155 0 1768 119 11 15 chr11 146549081 146549342 -4234211 - AluSx SINE Alu -52 260 1 292 286 155 19 chr11 146549358 146549519 -4234034 - MIR SINE MIR -79 183 1 191 339 35 52 chr11 146549522 146549637 -4233916 + MIR SINE MIR 21 133 -129 396 40 0 0 chr11 146550792 146550842 -4232711 + (CA)n Simple_repeat Simple_repeat 2 51 0 408 296 54 43 chr11 146551110 146551478 -4232075 + L1ME4a LINE L1 5485 5856 -265 390 328 49 0 chr11 146551916 146552038 -4231515 + MIR SINE MIR 77 204 -58 787 178 40 63 chr11 146552676 146552776 -4230777 - MER5B DNA MER1_type -6 172 76 576 278 44 0 chr11 146552776 146552956 -4230597 + MER5A DNA MER1_type 2 189 0 787 178 40 63 chr11 146552956 146553029 -4230524 - MER5B DNA MER1_type -102 76 3 1501 201 11 0 chr11 146553500 146553764 -4229789 + AluJb SINE Alu 28 294 -18 1011 174 38 0 chr11 146553882 146554095 -4229458 + L1MA9 LINE L1 6052 6272 -40 769 145 17 12 chr11 146554123 146554295 -4229258 + GA-rich Low_complexity Low_complexity 4 176 0 290 111 28 28 chr11 146554302 146554374 -4229179 + A-rich Low_complexity Low_complexity 2 73 0 233 269 0 0 chr11 146554387 146554439 -4229114 + MIR SINE MIR 93 144 -64 341 277 71 19 chr11 146554656 146554811 -4228742 - MIR SINE MIR -76 186 24 406 316 29 0 chr11 146555724 146555860 -4227693 - L3b LINE CR1 -192 1391 1252 188 326 105 11 chr11 146556720 146556815 -4226738 + L2 LINE L2 2986 3089 -183 186 326 20 0 chr11 146557686 146557735 -4225818 + MIR SINE MIR 30 79 -129 285 362 26 33 chr11 146559604 146559756 -4223797 + MIR SINE MIR 55 205 -57 591 274 94 11 chr11 146560556 146560879 -4222674 + MLT1J2 LTR MaLR 65 443 -7 2254 92 10 7 chr11 146561008 146561302 -4222251 + AluSq SINE Alu 1 295 -18 186 103 0 0 chr11 146564010 146564039 -4219514 + (TG)n Simple_repeat Simple_repeat 2 30 0 313 269 111 50 chr11 146564589 146564886 -4218667 - L1ME4a LINE L1 -244 5877 5563 2319 116 0 0 chr11 146565040 146565342 -4218211 - AluSx SINE Alu -10 302 1 303 28 0 0 chr11 146566097 146566133 -4217420 + (CA)n Simple_repeat Simple_repeat 2 37 0 2031 134 3 3 chr11 146566226 146566518 -4217035 + AluSx SINE Alu 1 292 -20 294 301 15 29 chr11 146567080 146567216 -4216337 + CT-rich Low_complexity Low_complexity 5 138 0 225 200 0 0 chr11 146568026 146568071 -4215482 + A-rich Low_complexity Low_complexity 1 45 0 713 259 110 68 chr11 146568294 146568792 -4214761 + LTR33 LTR ERVL 1 519 -2 574 302 42 109 chr11 146569251 146569702 -4213851 - L2 LINE L2 -2 3311 2891 637 182 9 0 chr11 146569710 146569820 -4213733 + FRAM SINE Alu 11 121 -55 986 325 57 39 chr11 146569900 146570510 -4213043 - L2 LINE L2 -410 2904 2284 205 393 69 7 chr11 146571061 146571206 -4212347 - MIR3 SINE MIR -30 178 25 196 318 127 0 chr11 146571232 146571342 -4212211 - L2 LINE L2 0 3313 3190 206 310 97 37 chr11 146571564 146571780 -4211773 - L2 LINE L2 -414 2900 2672 2528 67 0 10 chr11 146571785 146572098 -4211455 + AluY SINE Alu 1 310 -1 2267 85 3 0 chr11 146572529 146572822 -4210731 + AluY SINE Alu 1 294 -17 2830 13 0 0 chr11 146574414 146574725 -4208828 + AluY SINE Alu 1 311 0 253 333 48 40 chr11 146575241 146575269 -4208284 - MIR SINE MIR -113 149 123 2295 70 3 20 chr11 146575269 146575567 -4207986 + AluY SINE Alu 1 293 -18 253 333 48 40 chr11 146575567 146575664 -4207889 - MIR SINE MIR -139 123 23 296 358 86 25 chr11 146575682 146575844 -4207709 - L3 LINE CR1 -31 1546 1375 666 181 121 0 chr11 146576425 146576591 -4206962 - MER53 DNA DNA -3 186 1 885 169 17 0 chr11 146577152 146577330 -4206223 + MER53 DNA DNA 6 186 -3 363 159 148 23 chr11 146577553 146577641 -4205912 + MSTC LTR MaLR 1 99 -329 210 302 65 65 chr11 146577962 146578131 -4205422 - MER5A DNA MER1_type 0 189 21 * 264 399 13 7 chr11 146577985 146578138 -4205415 + MER5A DNA MER1_type 36 189 0 210 298 48 19 chr11 146578379 146578483 -4205070 - L2 LINE L2 -775 2539 2433 188 319 212 21 chr11 146578817 146579105 -4204448 + L2 LINE L2 1876 2218 -1096 243 337 51 34 chr11 146579137 146579312 -4204241 + L2 LINE L2 2433 2610 -704 422 358 102 38 chr11 146579331 146579838 -4203715 + L2 LINE L2 2563 3036 -236 195 42 0 0 chr11 146579838 146579862 -4203691 + (TA)n Simple_repeat Simple_repeat 2 25 0 1834 180 0 0 chr11 146579862 146580146 -4203407 - AluSx SINE Alu -28 284 1 422 358 102 38 chr11 146580146 146580310 -4203243 + L2 LINE L2 3035 3271 -1 435 275 174 13 chr11 146581540 146581689 -4201864 + MER5B DNA MER1_type 1 173 -5 191 296 14 56 chr11 146581916 146581987 -4201566 + L2 LINE L2 3203 3270 -2 259 369 27 43 chr11 146582836 146583023 -4200530 - L2 LINE L2 0 3272 3089 1976 145 7 0 chr11 146583047 146583336 -4200217 - AluSx SINE Alu -21 291 1 540 292 88 40 chr11 146584464 146584690 -4198863 + MIR SINE MIR 20 256 -6 466 285 92 82 chr11 146586310 146586407 -4197146 + L2 LINE L2 2896 2991 -322 2463 104 19 22 chr11 146586407 146586772 -4196781 + THE1B LTR MaLR 1 364 0 466 285 92 82 chr11 146586772 146587088 -4196465 + L2 LINE L2 2991 3313 0 5739 87 81 4 chr11 146587365 146588429 -4195124 + L1PA6 LINE L1 5025 6154 0 1213 183 109 93 chr11 146588496 146588956 -4194597 + MLT1C LTR MaLR 1 467 0 233 292 28 28 chr11 146589497 146589569 -4193984 - L2 LINE L2 -12 3301 3230 266 264 0 22 chr11 146590472 146590563 -4192990 + (TA)n Simple_repeat Simple_repeat 2 90 0 324 289 0 11 chr11 146590564 146590654 -4192899 + L1MC4 LINE L1 6615 6703 -1339 322 266 0 43 chr11 146590662 146590756 -4192797 + L1MC4 LINE L1 6613 6702 -1340 312 245 31 0 chr11 146590757 146590855 -4192698 + (TA)n Simple_repeat Simple_repeat 2 102 0 26 50 0 0 chr11 146591154 146591194 -4192359 + AT_rich Low_complexity Low_complexity 1 40 0 360 176 0 0 chr11 146591549 146591617 -4191936 + (CA)n Simple_repeat Simple_repeat 1 68 0 303 311 65 57 chr11 146592469 146592855 -4190698 + MLT1J2 LTR MaLR 47 435 -15 21 36 0 0 chr11 146593294 146593322 -4190231 + AT_rich Low_complexity Low_complexity 1 28 0 309 270 196 7 chr11 146593570 146593718 -4189835 - MER5B DNA MER1_type -2 176 1 984 318 68 6 chr11 146594050 146594560 -4188993 + L2 LINE L2 2640 3189 -124 268 323 75 0 chr11 146594639 146594732 -4188821 + L2 LINE L2 3157 3256 -16 254 292 142 8 chr11 146594881 146595001 -4188552 + MIR SINE MIR 57 192 -70 215 264 0 56 chr11 146595215 146595287 -4188266 + MIR3 SINE MIR 141 208 0 215 31 31 0 chr11 146595764 146595796 -4187757 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 302 167 0 15 chr11 146595994 146596060 -4187493 + CT-rich Low_complexity Low_complexity 4 68 0 297 141 35 0 chr11 146597105 146597190 -4186363 + (TA)n Simple_repeat Simple_repeat 2 89 0 2047 92 0 58 chr11 146600127 146600422 -4183131 + AluSx SINE Alu 2 279 -33 244 0 0 53 chr11 146600429 146600467 -4183086 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 540 291 143 22 chr11 146600614 146600844 -4182709 - MIR SINE MIR -2 260 3 195 231 138 62 chr11 146600956 146601021 -4182532 - L2 LINE L2 -3 3269 3200 291 252 17 42 chr11 146603018 146603137 -4180416 - LTR41 LTR ERVL -9 764 649 292 219 19 38 chr11 146603472 146603577 -4179976 - LTR41 LTR ERVL -668 105 3 33 56 0 0 chr11 146604306 146604360 -4179193 + AT_rich Low_complexity Low_complexity 1 54 0 186 87 65 0 chr11 146604520 146604566 -4178987 + (TA)n Simple_repeat Simple_repeat 2 50 0 321 276 159 56 chr11 146604645 146604859 -4178694 - L1MC/D LINE L1 -2259 5549 5314 2044 106 4 0 chr11 146605282 146605556 -4177997 + AluSx SINE Alu 23 297 -15 2609 121 35 21 chr11 146607121 146607543 -4176010 - MSTA LTR MaLR 0 428 1 2070 160 26 40 chr11 146607944 146608369 -4175184 + MSTB1 LTR MaLR 1 419 -13 991 233 19 56 chr11 146608393 146608715 -4174838 + L1MD2 LINE L1 6028 6337 -22 255 61 0 0 chr11 146609497 146609530 -4174023 + (CA)n Simple_repeat Simple_repeat 2 34 0 728 264 114 45 chr11 146609631 146610078 -4173475 + MLT1H LTR MaLR 72 549 0 202 353 118 43 chr11 146612358 146612545 -4171008 + MIR SINE MIR 15 215 -47 184 333 16 0 chr11 146613438 146613501 -4170052 + MIR3 SINE MIR 126 189 -19 670 251 148 59 chr11 146613760 146614186 -4169367 - MLT2C2 LTR ERVL 0 464 1 498 345 56 53 chr11 146614513 146614835 -4168718 - L3 LINE CR1 -11 1566 1244 7291 146 88 36 chr11 146615492 146617152 -4166401 - pTR5 LTR ERV1 0 2438 35 2095 206 43 40 chr11 146617312 146617865 -4165688 + L1MD1 LINE L1 5680 6234 -8 * 3640 250 53 35 chr11 146617854 146619323 -4164230 - L1MC/D LINE L1 -1286 4860 3365 1692 208 149 29 chr11 146619353 146619835 -4163718 + MLT1F LTR MaLR 1 540 -2 269 258 11 75 chr11 146619931 146620024 -4163529 - L2 LINE L2 0 3313 3227 459 0 0 0 chr11 146620712 146620763 -4162790 + (CA)n Simple_repeat Simple_repeat 2 52 0 1626 182 25 0 chr11 146621923 146622209 -4161344 + AluJb SINE Alu 1 293 -19 2150 94 0 33 chr11 146622470 146622795 -4160758 - AluSx SINE Alu 0 312 1 345 301 16 16 chr11 146622799 146622922 -4160631 + MIR SINE MIR 82 204 -58 233 289 10 77 chr11 146623380 146623484 -4160069 + L2 LINE L2 3217 3313 0 4138 88 33 35 chr11 146624225 146624608 -4158945 - L1PA10 LINE L1 -2 6166 5783 2149 102 30 10 chr11 146624608 146624911 -4158642 - AluSc SINE Alu 0 309 1 4138 88 33 35 chr11 146624911 146625160 -4158393 - L1PA10 LINE L1 -385 5783 5535 3284 135 50 1 chr11 146625160 146625883 -4157670 + L1PA8A LINE L1 4730 5487 -644 2305 111 3 0 chr11 146626287 146626584 -4156969 + AluSx SINE Alu 1 298 -14 24 0 0 0 chr11 146626974 146626998 -4156555 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr11 146628094 146628127 -4155426 + AT_rich Low_complexity Low_complexity 1 33 0 250 256 70 12 chr11 146628147 146628233 -4155320 + L3 LINE CR1 678 768 -809 334 321 9 0 chr11 146628277 146628389 -4155164 + L1MC4 LINE L1 6614 6726 -1316 2254 274 61 6 chr11 146628457 146629555 -4153998 + L1ME3A LINE L1 4998 6162 -8 384 278 80 37 chr11 146629574 146629736 -4153817 + L3 LINE CR1 801 969 -608 240 354 68 27 chr11 146629778 146629925 -4153628 - MIR3 SINE MIR -21 187 35 2382 93 0 3 chr11 146630015 146630325 -4153228 + AluSx SINE Alu 1 309 -3 180 0 0 0 chr11 146630484 146630504 -4153049 + (C)n Simple_repeat Simple_repeat 1 20 0 234 0 0 0 chr11 146630531 146630557 -4152996 + (A)n Simple_repeat Simple_repeat 1 26 0 558 297 84 75 chr11 146631207 146632601 -4150952 + L1MC3 LINE L1 687 5895 -252 1902 115 63 3 chr11 146632947 146633234 -4150319 + AluSq SINE Alu 5 308 -5 312 306 150 47 chr11 146633247 146633606 -4149947 + L3 LINE CR1 1131 1526 -51 267 289 31 21 chr11 146633653 146633750 -4149803 - MIR SINE MIR -38 224 127 243 0 0 0 chr11 146634051 146634078 -4149475 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2357 109 0 0 chr11 146635374 146635685 -4147868 + AluSx SINE Alu 1 311 -1 260 199 116 16 chr11 146635985 146636066 -4147487 + MIR3 SINE MIR 71 156 -52 1311 205 35 51 chr11 146636115 146636495 -4147058 - MLT1A2 LTR MaLR 0 467 1 473 343 9 33 chr11 146636712 146636925 -4146628 + MIR SINE MIR 48 255 -7 193 261 22 0 chr11 146636983 146637029 -4146524 - MIR SINE MIR -130 78 32 242 338 12 12 chr11 146638201 146638281 -4145272 + L2 LINE L2 3232 3311 -2 273 368 14 0 chr11 146638307 146638446 -4145107 + MIR SINE MIR 11 155 -53 4576 114 78 70 chr11 146638456 146639580 -4143973 + pTR5 LTR ERV1 741 2025 -413 341 194 31 20 chr11 146639580 146639678 -4143875 + LTR30 LTR ERV1 544 642 -80 1432 104 5 5 chr11 146639681 146639902 -4143651 + pTR5 LTR ERV1 172 392 -2046 231 258 22 11 chr11 146640516 146640605 -4142948 + HAL1 LINE L1 998 1087 -1420 216 135 0 0 chr11 146640632 146640669 -4142884 + (TC)n Simple_repeat Simple_repeat 2 38 0 1675 58 0 5 chr11 146641824 146642029 -4141524 + AluY SINE Alu 106 309 -2 848 96 59 0 chr11 146642944 146643080 -4140473 + L1MA5A LINE L1 6151 6294 -3 2413 74 0 0 chr11 146643384 146643680 -4139873 + AluY SINE Alu 1 296 -15 1621 142 40 46 chr11 146643751 146644054 -4139499 + AluJb SINE Alu 1 301 -11 356 250 98 98 chr11 146644422 146644666 -4138887 - MIR SINE MIR -13 249 6 4296 197 30 5 chr11 146646173 146647098 -4136455 - MER45B DNA AcHobo 0 1040 1 630 241 53 37 chr11 146647100 146647287 -4136266 + MIR SINE MIR 73 262 0 794 242 32 34 chr11 146647442 146647671 -4135882 - MER20 DNA MER1_type -4 215 1 180 152 0 0 chr11 146649598 146649631 -4133922 + (TA)n Simple_repeat Simple_repeat 1 33 0 672 300 23 35 chr11 146649844 146650104 -4133449 + MIR SINE MIR 2 258 -4 250 311 0 0 chr11 146651335 146651396 -4132157 + MIR SINE MIR 47 107 -155 246 245 147 56 chr11 146651609 146651752 -4131801 + MIR SINE MIR 104 259 -3 526 278 25 19 chr11 146652656 146652818 -4130735 - MIR SINE MIR -10 252 90 368 200 8 175 chr11 146652987 146653051 -4130502 + LTR41 LTR ERVL 553 626 -147 2186 137 36 17 chr11 146653051 146653408 -4130145 + THE1B LTR MaLR 1 364 0 368 200 8 175 chr11 146653408 146653583 -4129970 + LTR41 LTR ERVL 626 752 -21 246 296 45 15 chr11 146653595 146653727 -4129826 + L2 LINE L2 2820 2955 -359 333 0 0 0 chr11 146653737 146653774 -4129779 + (CA)n Simple_repeat Simple_repeat 1 37 0 4738 179 39 18 chr11 146653774 146653911 -4129642 + L1PB4 LINE L1 4261 4394 -1762 192 77 0 0 chr11 146653911 146653937 -4129616 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 4738 179 39 18 chr11 146653937 146654563 -4128990 + L1PB4 LINE L1 4394 5005 -1151 1324 142 50 0 chr11 146654563 146654782 -4128771 + MER30 DNA MER1_type 1 230 0 4738 179 39 18 chr11 146654782 146655861 -4127692 + L1PB4 LINE L1 5005 6155 -1 306 304 96 32 chr11 146655841 146656332 -4127221 + L1MDa LINE L1 1407 1982 -4709 * 693 327 142 2 chr11 146656522 146656987 -4126566 + L1MDa LINE L1 3367 3896 -2748 1417 317 27 24 chr11 146657086 146657762 -4125791 + L1MEc LINE L1 39 716 -5680 5061 163 19 24 chr11 146657780 146659063 -4124490 + L1M1 LINE L1 4235 5525 -743 620 284 84 29 chr11 146659076 146659911 -4123642 + L1MEc LINE L1 1043 1923 -4473 263 236 55 106 chr11 146659906 146660105 -4123448 + L1ME1 LINE L1 5935 6123 -43 * 3639 158 132 9 chr11 146662528 146663264 -4120289 - LTR1B LTR ERV1 0 826 1 1583 151 27 27 chr11 146664847 146665179 -4118374 - L1MA4 LINE L1 -133 6167 5836 619 145 8 32 chr11 146665179 146665303 -4118250 + L1MA4 LINE L1 6173 6293 -7 241 204 20 0 chr11 146665445 146665494 -4118059 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 29 70 0 0 chr11 146665547 146665604 -4117949 + AT_rich Low_complexity Low_complexity 1 57 0 260 244 154 0 chr11 146666156 146666234 -4117319 + MIR SINE MIR 101 190 -72 189 245 61 0 chr11 146666433 146666482 -4117071 - L2 LINE L2 -89 3183 3132 268 261 25 25 chr11 146667523 146667642 -4115911 - MLT1K LTR MaLR -15 573 455 285 309 41 0 chr11 146668286 146668383 -4115170 + L2 LINE L2 2958 3058 -255 1226 218 45 6 chr11 146668428 146668758 -4114795 - L1MB8 LINE L1 -9 6169 5827 1981 192 14 33 chr11 146668764 146669185 -4114368 - MER47B DNA MER2_type -5 413 1 5981 220 55 11 chr11 146669185 146671520 -4112033 - L1MB8 LINE L1 -355 5829 3385 1851 110 14 14 chr11 146671537 146671819 -4111734 + MER1B DNA MER1_type 57 338 -1 684 263 27 21 chr11 146671852 146672187 -4111366 - L1MB8 LINE L1 -2789 3357 3021 558 273 16 49 chr11 146672197 146672501 -4111052 + HAL1 LINE L1 1311 1604 -903 590 144 21 0 chr11 146672636 146672733 -4110820 + L1MC1 LINE L1 6217 6315 -18 345 300 32 71 chr11 146673522 146673775 -4109778 + L1MC4a LINE L1 5689 5931 -1877 390 91 0 0 chr11 146673837 146673892 -4109661 + (TG)n Simple_repeat Simple_repeat 1 55 0 1777 166 24 48 chr11 146674409 146674783 -4108770 + MLT1A1 LTR MaLR 1 365 0 311 344 86 18 chr11 146675104 146675267 -4108286 + MIR3 SINE MIR 12 185 -23 310 290 6 35 chr11 146675516 146675685 -4107868 + MER41B LTR ERV1 267 430 -205 3936 129 2 5 chr11 146675736 146676341 -4107212 - L1PA12 LINE L1 -3 6165 5563 564 196 58 90 chr11 146676604 146676887 -4106666 + MER39 LTR ERV1 67 541 -166 670 356 115 10 chr11 146677079 146677655 -4105898 + L1ME LINE L1 4633 5268 -878 396 152 13 0 chr11 146677657 146677736 -4105817 - MER116 DNA Mariner 0 80 1 264 305 43 5 chr11 146677738 146677948 -4105605 + L1ME LINE L1 5272 5489 -673 963 267 15 33 chr11 146678150 146678540 -4105013 - L1M4c LINE L1 -4581 1982 1600 377 307 100 33 chr11 146678723 146678993 -4104560 - L1M4 LINE L1 -1366 4780 4493 549 299 68 65 chr11 146679650 146680312 -4103241 - L1M4c LINE L1 -4615 1767 1036 299 134 45 30 chr11 146680930 146680997 -4102556 + MER53 DNA DNA 1 68 -121 1929 138 0 3 chr11 146681897 146682206 -4101347 - AluSq SINE Alu 0 308 1 256 371 43 9 chr11 146682254 146682370 -4101183 - MIR SINE MIR -66 142 23 389 296 109 31 chr11 146682829 146683086 -4100467 - L1MCa LINE L1 -4730 1696 1420 335 316 62 21 chr11 146683118 146683406 -4100147 - L1MCa LINE L1 -4885 1531 1232 2382 237 9 33 chr11 146683590 146684235 -4099318 - MER82 DNA MER2_type 0 653 24 2640 94 24 5 chr11 146684244 146684625 -4098928 + L1PB1 LINE L1 5763 6150 -1 621 259 105 5 chr11 146685497 146685704 -4097849 - MIR SINE MIR -1 261 34 235 397 30 45 chr11 146685859 146686058 -4097495 + L2 LINE L2 3076 3271 -1 787 252 29 54 chr11 146686339 146686849 -4096704 + MLT1F1 LTR MaLR 1 565 -2 285 51 0 0 chr11 146687419 146687458 -4096095 + (CA)n Simple_repeat Simple_repeat 2 40 0 397 276 71 24 chr11 146688102 146688229 -4095324 + L2 LINE L2 2359 2491 -823 249 304 123 58 chr11 146688258 146688501 -4095052 + L2 LINE L2 2984 3242 -71 189 331 98 63 chr11 146689103 146689469 -4094084 + L2 LINE L2 2127 2505 -809 274 393 15 25 chr11 146689832 146690028 -4093525 + L2 LINE L2 2549 2742 -572 298 258 52 58 chr11 146690175 146690330 -4093223 + L2 LINE L2 3105 3258 -55 485 323 38 21 chr11 146693185 146693371 -4090182 + MIR3 SINE MIR 11 199 -9 183 133 0 0 chr11 146696475 146696505 -4087048 - L2 LINE L2 -2 3311 3282 246 272 120 0 chr11 146697213 146697305 -4086248 + L2 LINE L2 3188 3290 -23 269 321 7 73 chr11 146697800 146697937 -4085616 - MIR3 SINE MIR -39 169 42 469 326 73 32 chr11 146698055 146698273 -4085280 - MIR SINE MIR -32 230 4 194 393 35 12 chr11 146698439 146698612 -4084941 + MER5A DNA MER1_type 7 183 -6 182 273 91 30 chr11 146699205 146699271 -4084282 + MIR SINE MIR 40 109 -99 650 302 47 5 chr11 146701255 146701467 -4082086 - MIR SINE MIR 0 262 42 448 263 94 88 chr11 146702628 146702970 -4080583 + L1ME4a LINE L1 5718 6061 -60 22 35 0 0 chr11 146703251 146703280 -4080273 + AT_rich Low_complexity Low_complexity 1 29 0 234 62 0 0 chr11 146704309 146704341 -4079212 + (T)n Simple_repeat Simple_repeat 1 32 0 629 311 106 22 chr11 146704848 146705215 -4078338 + L3 LINE CR1 1180 1577 0 297 339 113 6 chr11 146705680 146705857 -4077696 + MIR SINE MIR 17 212 -50 273 57 0 0 chr11 146707441 146707476 -4076077 + (TC)n Simple_repeat Simple_repeat 2 36 0 515 345 84 54 chr11 146707617 146708058 -4075495 - L2 LINE L2 -10 3262 2809 322 295 23 87 chr11 146708143 146708316 -4075237 - L3 LINE CR1 -8 1569 1408 199 156 0 0 chr11 146708375 146708407 -4075146 - L2 LINE L2 -93 3220 3189 2054 133 3 10 chr11 146708612 146708914 -4074639 + AluSx SINE Alu 1 300 -12 608 257 94 41 chr11 146709855 146710100 -4073453 - MLT1D LTR MaLR 0 505 248 337 275 0 12 chr11 146710436 146710516 -4073037 - L2 LINE L2 -10 3262 3184 432 284 43 0 chr11 146711091 146711207 -4072346 + L2 LINE L2 3193 3313 0 1996 189 29 10 chr11 146712276 146712694 -4070859 + MSTB LTR MaLR 1 426 0 643 299 49 42 chr11 146714240 146714528 -4069025 + L2 LINE L2 3012 3301 -12 1466 149 36 0 chr11 146714654 146714956 -4068597 + MER33 DNA MER1_type 10 322 -2 1503 192 26 26 chr11 146715079 146715418 -4068135 + MER44D DNA MER2_type 1 609 0 1794 158 174 11 chr11 146715587 146715955 -4067598 - MSTA LTR MaLR 0 428 1 9183 124 61 34 chr11 146715955 146717491 -4066062 - MSTA-int LTR MaLR 0 1580 3 1988 143 173 16 chr11 146717493 146717863 -4065690 - MSTA LTR MaLR 0 428 1 3947 116 25 0 chr11 146719596 146719951 -4063602 - L1PB1 LINE L1 -2 6149 5773 189 0 0 0 chr11 146719951 146719972 -4063581 + (CA)n Simple_repeat Simple_repeat 2 22 0 3947 116 25 0 chr11 146719972 146720178 -4063375 - L1PB1 LINE L1 -378 5773 5574 2427 93 0 6 chr11 146720808 146721120 -4062433 - AluSg SINE Alu 0 310 1 25 0 0 0 chr11 146721542 146721567 -4061986 + AT_rich Low_complexity Low_complexity 1 25 0 481 171 68 117 chr11 146721917 146722024 -4061529 + L1MD3 LINE L1 7780 7872 -123 2997 167 45 8 chr11 146722024 146722551 -4061002 + L1MB3 LINE L1 5630 6176 -7 481 171 68 117 chr11 146722551 146722665 -4060888 + L1MD3 LINE L1 7872 7990 -5 206 289 56 67 chr11 146722713 146722803 -4060750 + MER5A DNA MER1_type 61 149 -40 324 294 12 0 chr11 146723387 146723472 -4060081 + MIR3 SINE MIR 102 187 -21 2151 134 3 3 chr11 146723582 146723888 -4059665 - AluSx SINE Alu -6 306 1 311 268 12 12 chr11 146725154 146725236 -4058317 + MIR SINE MIR 62 143 -119 226 304 40 16 chr11 146727109 146727234 -4056319 - L2 LINE L2 -67 3246 3119 2354 88 3 7 chr11 146727444 146727751 -4055802 + AluSp SINE Alu 1 306 -7 22 0 0 0 chr11 146727875 146727897 -4055656 + AT_rich Low_complexity Low_complexity 1 22 0 290 307 127 36 chr11 146727969 146728135 -4055418 - MER5A DNA MER1_type 0 189 9 224 345 101 34 chr11 146729491 146729610 -4053943 + MIR SINE MIR 22 148 -60 1298 99 0 0 chr11 146729759 146729930 -4053623 + AluSg/x SINE Alu 132 302 -10 517 298 99 15 chr11 146731707 146731979 -4051574 + LTR33 LTR ERVL 1 295 -226 748 264 50 41 chr11 146732725 146732945 -4050608 + MIR SINE MIR 14 235 -27 315 239 138 14 chr11 146733454 146733592 -4049961 - L1ME4a LINE L1 0 6121 5967 438 258 119 92 chr11 146733597 146733964 -4049589 - L1ME4a LINE L1 -179 5942 5561 3591 126 11 4 chr11 146733964 146734494 -4049059 + L1PA14 LINE L1 5628 6161 0 438 258 119 92 chr11 146734494 146734537 -4049016 - L1ME4a LINE L1 -560 5561 5521 37 23 0 0 chr11 146734621 146734665 -4048888 + AT_rich Low_complexity Low_complexity 1 44 0 258 424 8 0 chr11 146734976 146735101 -4048452 - L2 LINE L2 -6 3266 3141 295 280 159 0 chr11 146738161 146738268 -4045285 - MIR3 SINE MIR -1 207 84 192 40 0 0 chr11 146738715 146738740 -4044813 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 333 0 0 0 chr11 146738911 146738948 -4044605 + (CA)n Simple_repeat Simple_repeat 2 38 0 207 369 141 20 chr11 146739201 146739399 -4044154 - L2 LINE L2 -493 2821 2600 440 283 29 7 chr11 146739454 146739592 -4043961 - L2 LINE L2 -11 3261 3121 270 330 33 0 chr11 146739629 146739720 -4043833 - MIR SINE MIR -155 107 14 2412 91 3 0 chr11 146740177 146740484 -4043069 - AluSp SINE Alu -5 308 1 391 323 12 18 chr11 146740763 146740930 -4042623 - MARNA DNA Mariner -135 451 286 338 320 167 18 chr11 146740981 146741209 -4042344 - MIR SINE MIR 0 262 1 4838 161 23 46 chr11 146741411 146742181 -4041372 + L1MA9 LINE L1 5366 6110 -202 2364 85 3 0 chr11 146742181 146742476 -4041077 - AluSc SINE Alu -13 296 1 4838 161 23 46 chr11 146742476 146742675 -4040878 + L1MA9 LINE L1 6110 6312 0 26 50 0 0 chr11 146742706 146742746 -4040807 + AT_rich Low_complexity Low_complexity 1 40 0 787 256 4 83 chr11 146745014 146745268 -4038285 - MIR SINE MIR 0 262 29 368 342 54 16 chr11 146745772 146745956 -4037597 - L2 LINE L2 -558 2756 2566 27 49 0 0 chr11 146747237 146747278 -4036275 + AT_rich Low_complexity Low_complexity 1 41 0 2472 54 7 0 chr11 146748731 146749027 -4034526 - AluY SINE Alu -13 298 1 195 258 21 75 chr11 146749787 146749880 -4033673 - MIR SINE MIR -52 210 123 2148 120 0 0 chr11 146750300 146750584 -4032969 + AluSq SINE Alu 1 284 -29 436 267 107 27 chr11 146750608 146750758 -4032795 - MIR SINE MIR -84 178 17 450 279 51 86 chr11 146751105 146751456 -4032097 - MLT1I LTR MaLR -2 407 69 235 195 0 0 chr11 146751572 146751613 -4031940 + LTR33 LTR ERVL 39 79 -442 506 340 63 5 chr11 146751792 146751998 -4031555 + LTR33 LTR ERVL 304 521 0 418 245 96 11 chr11 146752337 146752431 -4031122 + MER58A DNA MER1_type 1 102 -5 293 284 0 14 chr11 146752439 146752513 -4031040 - MIR SINE MIR -173 89 17 509 280 24 0 chr11 146752920 146753045 -4030508 + MER58A DNA MER1_type 97 224 0 207 284 14 40 chr11 146753341 146753415 -4030138 + L2 LINE L2 3201 3272 0 2704 149 26 9 chr11 146754686 146755109 -4028444 + MSTB1 LTR MaLR 1 430 -2 526 240 152 12 chr11 146756076 146756247 -4027306 - MIR SINE MIR -41 221 27 273 321 82 61 chr11 146756731 146757024 -4026529 + L3 LINE CR1 1251 1549 -28 516 260 79 28 chr11 146757044 146757197 -4026356 - MER58A DNA MER1_type -2196 224 59 1858 194 58 0 chr11 146757197 146757526 -4026027 - MER7A DNA MER2_type 0 346 1 516 260 79 28 chr11 146757526 146757549 -4026004 - MER58A DNA MER1_type -2361 59 39 283 310 84 21 chr11 146757862 146758004 -4025549 - MIR3 SINE MIR 0 208 58 201 200 67 0 chr11 146759790 146759835 -4023718 - L2 LINE L2 -4 3309 3262 236 252 36 99 chr11 146761820 146761931 -4021622 - MIR SINE MIR -73 189 86 206 247 55 41 chr11 146761971 146762044 -4021509 + MIR SINE MIR 20 93 -169 776 310 17 4 chr11 146762063 146762302 -4021251 - MIR SINE MIR -9 253 12 283 370 39 0 chr11 146762319 146762446 -4021107 + MIR SINE MIR 97 228 -34 204 97 0 0 chr11 146762593 146762624 -4020929 + (TCTCTG)n Simple_repeat Simple_repeat 4 34 0 234 62 0 0 chr11 146762627 146762659 -4020894 + (TG)n Simple_repeat Simple_repeat 1 32 0 180 0 0 0 chr11 146764021 146764041 -4019512 + (TC)n Simple_repeat Simple_repeat 1 20 0 1211 187 0 9 chr11 146764043 146764257 -4019296 - AluJo SINE Alu -100 212 1 245 255 53 11 chr11 146764624 146764718 -4018835 + L1MEd LINE L1 8 105 -6014 274 309 119 24 chr11 146766965 146767091 -4016462 - MIR3 SINE MIR -54 154 17 22 0 0 0 chr11 146767119 146767141 -4016412 + AT_rich Low_complexity Low_complexity 1 22 0 639 187 24 8 chr11 146768578 146768701 -4014852 + FLAM_A SINE Alu 1 125 -8 459 240 105 0 chr11 146768950 146769121 -4014432 + MER114 LTR ERV 1 189 -459 222 37 0 0 chr11 146769146 146769173 -4014380 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1302 169 20 93 chr11 146769176 146769477 -4014076 - AluJb SINE Alu -33 279 1 854 211 72 75 chr11 146769484 146769872 -4013681 + MER114 LTR ERV 222 608 -40 945 204 0 6 chr11 146769901 146770073 -4013480 + AluJo SINE Alu 122 292 -20 46 19 0 0 chr11 146770237 146770290 -4013263 + AT_rich Low_complexity Low_complexity 1 53 0 593 158 48 20 chr11 146770296 146770442 -4013111 + MER105 DNA DNA 36 185 -19 2068 146 33 28 chr11 146771642 146772004 -4011549 - THE1B LTR MaLR 0 364 1 23 68 0 0 chr11 146772023 146772067 -4011486 + AT_rich Low_complexity Low_complexity 1 44 0 194 347 53 0 chr11 146772949 146773024 -4010529 + MIR SINE MIR 45 123 -85 261 318 127 8 chr11 146773853 146773979 -4009574 - MIR3 SINE MIR -34 174 34 752 247 80 33 chr11 146774404 146774704 -4008849 + MER46C DNA MER2_type 25 338 0 288 200 10 110 chr11 146775150 146775250 -4008303 - MER103 DNA DNA -33 133 44 215 309 128 68 chr11 146775382 146775631 -4007922 + L3 LINE CR1 1107 1370 -207 4257 171 22 31 chr11 146775632 146776298 -4007255 - L1MB3 LINE L1 0 6183 5526 1978 141 85 15 chr11 146776298 146776638 -4006915 - THE1B LTR MaLR 0 364 1 4257 171 22 31 chr11 146776638 146776880 -4006673 - L1MB3 LINE L1 -657 5526 5283 206 281 94 31 chr11 146776886 146776982 -4006571 + L3 LINE CR1 1370 1471 -106 252 0 0 0 chr11 146777010 146777038 -4006515 + (TG)n Simple_repeat Simple_repeat 1 28 0 1985 139 0 0 chr11 146777038 146777311 -4006242 - AluSx SINE Alu -33 279 7 521 214 63 32 chr11 146777407 146777533 -4006020 - L2 LINE L2 -2 3311 3182 544 317 85 60 chr11 146777572 146777891 -4005662 - L2 LINE L2 -340 2974 2648 216 229 84 12 chr11 146777898 146777981 -4005572 + L2 LINE L2 3125 3213 -100 188 309 94 54 chr11 146778052 146778201 -4005352 - MIR SINE MIR -76 186 32 363 307 30 10 chr11 146778275 146778376 -4005177 - L2 LINE L2 -20 3293 3191 196 123 0 53 chr11 146778511 146778568 -4004985 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 5682 75 21 42 chr11 146778576 146779458 -4004095 - L1PA8 LINE L1 -7 6165 5302 5429 46 0 0 chr11 146779457 146780158 -4003395 + L1PA8 LINE L1 4592 5292 -854 * 1522 209 13 54 chr11 146780412 146780799 -4002754 - MLT1A2 LTR MaLR 0 374 4 24 32 0 0 chr11 146782077 146782108 -4001445 + AT_rich Low_complexity Low_complexity 1 31 0 621 204 93 48 chr11 146782111 146782380 -4001173 - HAL1 LINE L1 -8 2499 2219 376 256 237 6 chr11 146782856 146783012 -4000541 - HAL1 LINE L1 -609 1898 1707 271 349 141 17 chr11 146783100 146783447 -4000106 + MLT1L LTR MaLR 150 539 -76 508 278 125 26 chr11 146783519 146783895 -3999658 - HAL1 LINE L1 -798 1709 1261 1593 170 6 65 chr11 146783895 146784218 -3999335 - AluJo SINE Alu -3 309 6 508 278 125 26 chr11 146784218 146784385 -3999168 - HAL1 LINE L1 -1246 1261 1112 23 54 0 0 chr11 146784400 146784437 -3999116 + AT_rich Low_complexity Low_complexity 1 37 0 1334 136 0 0 chr11 146784438 146784659 -3998894 - L1MA2 LINE L1 -1 6303 6083 989 220 23 5 chr11 146784904 146785118 -3998435 + MER20 DNA MER1_type 2 219 0 424 310 17 35 chr11 146785790 146785964 -3997589 + MIR SINE MIR 46 216 -46 276 254 169 31 chr11 146786444 146786574 -3996979 + MIR SINE MIR 85 232 -30 189 0 0 0 chr11 146786598 146786619 -3996934 + (TA)n Simple_repeat Simple_repeat 1 21 0 2603 93 24 3 chr11 146786619 146786996 -3996557 - MLT2A1 LTR ERVL -59 385 1 365 259 0 37 chr11 146787559 146787667 -3995886 + MER5B DNA MER1_type 75 178 0 193 244 0 0 chr11 146787667 146787708 -3995845 + MER5B DNA MER1_type 138 178 0 25 0 0 0 chr11 146788244 146788269 -3995284 + AT_rich Low_complexity Low_complexity 1 25 0 318 106 0 0 chr11 146788353 146788400 -3995153 + (GA)n Simple_repeat Simple_repeat 2 48 0 337 324 135 5 chr11 146788878 146789063 -3994490 - MIR SINE MIR -23 239 31 297 293 87 40 chr11 146789485 146789635 -3993918 + L2 LINE L2 3156 3312 -1 252 299 31 71 chr11 146790305 146790432 -3993121 - L2 LINE L2 0 3272 3151 257 315 146 0 chr11 146792184 146792314 -3991239 - MIR SINE MIR -49 213 65 280 273 52 0 chr11 146792602 146792679 -3990874 + L2 LINE L2 3225 3305 -8 664 311 45 3 chr11 146792849 146793284 -3990269 - MER115 DNA AcHobo 0 693 189 243 313 146 7 chr11 146795007 146795151 -3988402 - L2 LINE L2 -221 3051 2888 243 125 0 0 chr11 146795357 146795397 -3988156 + (CA)n Simple_repeat Simple_repeat 1 40 0 239 271 209 16 chr11 146796678 146796807 -3986746 - L2 LINE L2 0 3313 3160 341 331 73 85 chr11 146796966 146797295 -3986258 + L2 LINE L2 2931 3255 -17 218 354 83 28 chr11 146797327 146797471 -3986082 - L2 LINE L2 -226 3087 2936 1575 244 33 37 chr11 146797557 146797987 -3985566 + MLT2B3 LTR ERVL 127 554 0 303 49 0 0 chr11 146798403 146798444 -3985109 + (CA)n Simple_repeat Simple_repeat 1 41 0 1849 162 23 0 chr11 146799092 146799443 -3984110 + L1M4 LINE L1 5409 5767 -411 307 270 0 22 chr11 146799461 146799550 -3984003 - L1MC4 LINE L1 -1336 6706 6620 1761 116 78 0 chr11 146799553 146799847 -3983706 + MER7A DNA MER2_type 12 326 -20 2421 99 3 0 chr11 146799879 146800191 -3983362 - AluSp SINE Alu 0 313 1 222 105 0 0 chr11 146800244 146800282 -3983271 + (CAGAGA)n Simple_repeat Simple_repeat 3 40 0 218 391 18 18 chr11 146800285 146800395 -3983158 - MIR SINE MIR -83 125 16 402 237 30 37 chr11 146800962 146801097 -3982456 - MER94 DNA DNA 0 134 1 236 292 77 62 chr11 146801241 146801371 -3982182 + MIR SINE MIR 41 172 -90 24 77 0 0 chr11 146801745 146801797 -3981756 + AT_rich Low_complexity Low_complexity 1 52 0 346 403 63 4 chr11 146801904 146802142 -3981411 - MIR SINE MIR -6 256 5 180 0 0 0 chr11 146802615 146802635 -3980918 + (A)n Simple_repeat Simple_repeat 1 20 0 389 368 70 5 chr11 146803053 146803238 -3980315 - L3 LINE CR1 -1 1576 1380 302 245 7 151 chr11 146803245 146803384 -3980169 - L2 LINE L2 0 3313 3195 579 329 94 48 chr11 146803399 146803813 -3979740 - L3 LINE CR1 -214 1363 931 563 291 35 30 chr11 146804132 146804335 -3979218 - MIR SINE MIR -46 216 13 24 53 0 0 chr11 146806581 146806619 -3976934 + AT_rich Low_complexity Low_complexity 1 38 0 268 321 95 15 chr11 146807071 146807208 -3976345 + MIR3 SINE MIR 57 204 -4 380 201 63 149 chr11 146808483 146808657 -3974896 + MIR3 SINE MIR 42 200 -8 274 347 85 28 chr11 146811729 146811963 -3971590 + L2 LINE L2 2768 3010 -262 186 43 0 0 chr11 146812423 146812446 -3971107 + (TTC)n Simple_repeat Simple_repeat 2 24 0 187 122 98 0 chr11 146812482 146812523 -3971030 + L2 LINE L2 1684 1728 -1586 316 351 0 45 chr11 146812573 146812727 -3970826 + L2 LINE L2 3167 3313 0 1471 199 58 35 chr11 146814307 146814759 -3968794 + LTR37B LTR ERV1 6 467 -1 33 25 0 0 chr11 146815488 146815528 -3968025 + AT_rich Low_complexity Low_complexity 1 40 0 200 33 0 33 chr11 146816067 146816097 -3967456 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 714 24 0 0 chr11 146816096 146816180 -3967373 + (GA)n Simple_repeat Simple_repeat 2 85 0 318 236 28 76 chr11 146817396 146817540 -3966013 + MER31-int LTR ERV1 3336 3472 -1464 228 182 0 36 chr11 146817723 146817778 -3965775 - MER58A DNA MER1_type -39 185 133 598 219 0 9 chr11 146817827 146817941 -3965612 - MER58A DNA MER1_type 0 118 6 213 345 72 84 chr11 146818823 146819168 -3964385 + L2 LINE L2 2920 3260 -12 37 52 0 0 chr11 146819184 146819242 -3964311 + AT_rich Low_complexity Low_complexity 1 58 0 1525 258 23 30 chr11 146819694 146820129 -3963424 + MER20B DNA MER1_type 43 474 -309 251 419 31 12 chr11 146820252 146820412 -3963141 + L2 LINE L2 3102 3264 -8 346 338 7 0 chr11 146820431 146820570 -3962983 - L2 LINE L2 -1 3312 3173 1459 217 210 41 chr11 146820700 146821161 -3962392 - MLT1H LTR MaLR 0 549 11 267 280 121 63 chr11 146821230 146821594 -3961959 - L2 LINE L2 -365 2949 2565 479 336 9 44 chr11 146821646 146821875 -3961678 + MIR SINE MIR 41 261 -1 198 353 88 0 chr11 146823265 146823367 -3960186 + MIR SINE MIR 12 122 -140 254 264 246 0 chr11 146823650 146823760 -3959793 + L2 LINE L2 3136 3272 0 180 248 56 64 chr11 146823873 146823998 -3959555 + MIR SINE MIR 66 189 -73 283 274 80 2 chr11 146825134 146825243 -3958310 - MIR SINE MIR -63 145 31 344 254 55 18 chr11 146825424 146825534 -3958019 - L2 LINE L2 0 3313 3200 435 152 0 0 chr11 146825828 146825907 -3957646 + (TA)n Simple_repeat Simple_repeat 2 80 0 253 330 9 26 chr11 146826981 146827096 -3956457 + MIR SINE MIR 16 128 -134 217 300 111 0 chr11 146827193 146827283 -3956270 + L2 LINE L2 2702 2801 -513 2194 106 0 7 chr11 146827318 146827632 -3955921 + AluSc SINE Alu 1 309 0 7104 54 6 0 chr11 146827888 146829122 -3954431 - L1PA6 LINE L1 0 6154 4899 1953 134 0 17 chr11 146829131 146829421 -3954132 - AluSx SINE Alu -27 285 1 232 325 133 20 chr11 146829423 146829574 -3953979 + L2 LINE L2 3118 3285 -28 3334 83 7 0 chr11 146829700 146830148 -3953405 - L1PA8 LINE L1 0 6172 5722 581 283 28 49 chr11 146831543 146831790 -3951763 + MIR SINE MIR 21 262 0 586 84 0 32 chr11 146832028 146832123 -3951430 - L1PA4 LINE L1 -3 6152 6061 3602 122 13 6 chr11 146833806 146834341 -3949212 + THE1-int LTR MaLR 975 1513 -67 1972 110 17 17 chr11 146834342 146834643 -3948910 + AluSq SINE Alu 1 301 -12 272 174 22 0 chr11 146834644 146834690 -3948863 + L1M4 LINE L1 5432 5478 -700 1466 151 0 0 chr11 146834694 146834906 -3948647 - AluJb SINE Alu -100 212 1 1055 182 6 0 chr11 146835096 146835261 -3948292 + MER1B DNA MER1_type 1 166 -131 180 0 0 0 chr11 146885325 146885345 -3898208 + (C)n Simple_repeat Simple_repeat 1 20 0 261 0 0 0 chr11 146885370 146885399 -3898154 + (A)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr11 146885399 146885420 -3898133 + AT_rich Low_complexity Low_complexity 1 21 0 277 313 21 31 chr11 146886391 146886487 -3897066 + MIR SINE MIR 27 121 -87 249 198 33 11 chr11 146887436 146887527 -3896026 + CT-rich Low_complexity Low_complexity 4 96 0 402 21 0 0 chr11 146887913 146887960 -3895593 + (TG)n Simple_repeat Simple_repeat 1 47 0 383 316 16 75 chr11 146889261 146889448 -3894105 + MIR SINE MIR 37 212 -50 191 346 129 41 chr11 146889450 146889745 -3893808 - L2 LINE L2 -3 3310 2990 180 288 25 51 chr11 146889896 146890014 -3893539 - L2 LINE L2 -203 3110 2996 762 313 124 31 chr11 146890037 146890737 -3892816 - L2 LINE L2 -623 2691 1927 295 320 32 82 chr11 146891626 146891845 -3891708 - MIR SINE MIR -30 232 25 393 357 88 35 chr11 146893493 146893866 -3889687 - L2 LINE L2 -9 3263 2871 183 284 207 0 chr11 146895029 146895145 -3888408 - L2 LINE L2 -1048 2266 2127 206 167 24 0 chr11 146896660 146896702 -3886851 + CT-rich Low_complexity Low_complexity 1 43 0 34 0 0 0 chr11 146898947 146898981 -3884572 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr11 146899612 146899643 -3883910 + GC_rich Low_complexity Low_complexity 1 31 0 333 155 0 0 chr11 146899664 146899722 -3883831 + A-rich Low_complexity Low_complexity 1 58 0 2320 107 0 0 chr11 146901123 146901423 -3882130 - AluSx SINE Alu -12 300 1 589 272 33 13 chr11 146901435 146901603 -3881950 - MIR SINE MIR -62 146 16 242 331 57 16 chr11 146901700 146901824 -3881729 - L2 LINE L2 -3 3310 3182 785 147 118 6 chr11 146902392 146902562 -3880991 - MER96B DNA MER1_type? -220 197 9 2321 97 0 26 chr11 146903131 146903442 -3880111 + AluSg SINE Alu 1 303 -7 561 241 95 13 chr11 146904407 146904565 -3878988 + MIR3 SINE MIR 16 186 -22 284 0 0 27 chr11 146906040 146906077 -3877476 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1190 201 11 95 chr11 146906101 146906480 -3877073 + MLT1A1 LTR MaLR 19 365 0 521 280 35 7 chr11 146907366 146907509 -3876044 - MIR SINE MIR -50 212 66 2457 74 0 0 chr11 146907512 146907809 -3875744 + AluY SINE Alu 1 297 -14 2295 119 0 3 chr11 146908633 146908944 -3874609 - AluSx SINE Alu -2 310 1 901 244 39 5 chr11 146910063 146910268 -3873285 - MER20 DNA MER1_type -3 216 5 210 71 0 0 chr11 146910322 146910350 -3873203 + (T)n Simple_repeat Simple_repeat 1 28 0 180 97 0 0 chr11 146910706 146910737 -3872816 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 396 311 53 8 chr11 146912188 146912320 -3871233 + MIR SINE MIR 14 151 -111 635 173 0 10 chr11 146912339 146912443 -3871110 + FLAM_A SINE Alu 23 125 -17 2501 66 3 19 chr11 146913458 146913775 -3869778 + AluSx SINE Alu 1 312 0 55 48 0 0 chr11 146913906 146913989 -3869564 + GC_rich Low_complexity Low_complexity 1 83 0 351 0 0 0 chr11 146914001 146914040 -3869513 + (A)n Simple_repeat Simple_repeat 1 39 0 25 0 0 0 chr11 146914223 146914248 -3869305 + AT_rich Low_complexity Low_complexity 1 25 0 2152 104 7 3 chr11 146914257 146914545 -3869008 + AluSx SINE Alu 1 289 -23 1734 109 59 0 chr11 146914545 146914783 -3868770 + AluSx SINE Alu 59 310 -2 206 392 81 0 chr11 146915715 146915863 -3867690 - MIR3 SINE MIR -16 192 33 200 329 0 14 chr11 146915968 146916041 -3867512 + L2 LINE L2 3242 3313 0 1956 133 33 6 chr11 146917576 146917804 -3865749 - MER44D DNA MER2_type -1882 609 389 180 0 0 0 chr11 146917804 146917824 -3865729 + (TC)n Simple_repeat Simple_repeat 1 20 0 1956 133 33 6 chr11 146917824 146917925 -3865628 - MER44D DNA MER2_type -2102 389 1 427 259 80 0 chr11 146917971 146918083 -3865470 - L2 LINE L2 -1 3312 3192 456 316 72 72 chr11 146919183 146919642 -3863911 + L2 LINE L2 2814 3272 0 340 254 49 84 chr11 146919911 146920053 -3863500 + L2 LINE L2 3169 3305 -8 245 267 286 0 chr11 146920088 146920193 -3863360 - MIR3 SINE MIR -49 159 25 256 298 32 0 chr11 146921322 146921416 -3862137 - L1MC/D LINE L1 -2001 5807 5711 2071 130 10 0 chr11 146921876 146922176 -3861377 + AluSq SINE Alu 1 303 -10 234 0 0 0 chr11 146922672 146922698 -3860855 + (A)n Simple_repeat Simple_repeat 1 26 0 364 282 128 21 chr11 146924682 146924916 -3858637 + MIR SINE MIR 4 262 0 210 259 0 0 chr11 146925432 146925490 -3858063 + T-rich Low_complexity Low_complexity 1 58 0 533 237 160 0 chr11 146925494 146925650 -3857903 - MER5A DNA MER1_type 0 189 9 243 164 41 41 chr11 146926062 146926135 -3857418 + L1MD3 LINE L1 7921 7993 -2 363 276 21 41 chr11 146926924 146927069 -3856484 + MIR SINE MIR 113 254 -8 226 283 19 0 chr11 146927335 146927388 -3856165 + polypurine Low_complexity Low_complexity 6 59 0 961 53 24 29 chr11 146927388 146927558 -3855995 + (GAAA)n Simple_repeat Simple_repeat 3 171 0 1236 27 5 38 chr11 146927658 146927679 -3855874 + (GAAA)n Simple_repeat Simple_repeat 1 200 0 1236 27 5 38 chr11 146927679 146927865 -3855688 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 228 189 0 0 chr11 146931404 146931441 -3852112 - L2 LINE L2 -38 3275 3239 4804 197 18 13 chr11 146931917 146933200 -3850353 + L1MB4 LINE L1 4894 6180 0 180 239 22 0 chr11 146935327 146935373 -3848180 + L2 LINE L2 3139 3185 -87 372 313 76 24 chr11 146935698 146935947 -3847606 + MIR SINE MIR 1 262 0 184 268 93 21 chr11 146936651 146936748 -3846805 - MIR3 SINE MIR 0 208 105 337 303 90 41 chr11 146937384 146937651 -3845902 + L2 LINE L2 3030 3309 -4 590 164 0 16 chr11 146937664 146937792 -3845761 + (TGGA)n Simple_repeat Simple_repeat 3 128 0 1655 164 54 13 chr11 146938821 146939089 -3844464 + AluJb SINE Alu 3 286 -26 231 36 0 0 chr11 146939089 146939117 -3844436 + (GA)n Simple_repeat Simple_repeat 2 29 0 1655 164 54 13 chr11 146939117 146939146 -3844407 + AluJb SINE Alu 286 312 0 553 249 79 18 chr11 146939407 146939636 -3843917 - L1ME4a LINE L1 -1 6120 5878 2291 101 7 0 chr11 146940541 146940847 -3842706 - AluSp SINE Alu -4 309 2 364 260 90 95 chr11 146941590 146941790 -3841763 + L3 LINE CR1 1317 1515 -62 279 313 98 0 chr11 146941853 146941965 -3841588 + L3 LINE CR1 1245 1367 -210 809 266 97 58 chr11 146942870 146943250 -3840303 + L2 LINE L2 2919 3313 0 675 312 146 15 chr11 146943257 146943530 -3840023 + HAL1 LINE L1 1054 1290 -1217 2825 6 0 25 chr11 146943530 146943849 -3839704 + AluYa5 SINE Alu 1 311 0 675 312 146 15 chr11 146943849 146944226 -3839327 + HAL1 LINE L1 1290 1789 -718 240 307 168 0 chr11 146944681 146944818 -3838735 + HAL1b LINE L1 752 911 -437 22 99 0 0 chr11 146944827 146944898 -3838655 + AT_rich Low_complexity Low_complexity 1 71 0 36 0 0 0 chr11 146945189 146945225 -3838328 + AT_rich Low_complexity Low_complexity 1 36 0 204 290 70 10 chr11 146946647 146946747 -3836806 - MIR SINE MIR -45 217 112 22 0 0 0 chr11 146947153 146947175 -3836378 + AT_rich Low_complexity Low_complexity 1 22 0 1210 142 19 0 chr11 146947963 146948174 -3835379 + L1MA4 LINE L1 6086 6300 0 543 264 66 62 chr11 146948342 146948600 -3834953 - MIR SINE MIR -2 260 2 266 303 63 21 chr11 146949486 146949628 -3833925 + MIR3 SINE MIR 21 168 -40 182 214 14 100 chr11 146950256 146950326 -3833227 + L2 LINE L2 3159 3222 -50 821 258 137 36 chr11 146950332 146950689 -3832864 + MLT1I LTR MaLR 17 409 0 426 294 25 25 chr11 146951182 146951342 -3832211 + MIR SINE MIR 18 177 -85 21 0 0 0 chr11 146952232 146952253 -3831300 + AT_rich Low_complexity Low_complexity 1 21 0 186 240 0 20 chr11 146952385 146952435 -3831118 - L2 LINE L2 0 3313 3265 2342 92 7 0 chr11 146952683 146952989 -3830564 + AluSx SINE Alu 1 308 -4 270 0 0 0 chr11 146953145 146953175 -3830378 + (T)n Simple_repeat Simple_repeat 1 30 0 2242 113 0 19 chr11 146954056 146954374 -3829179 - AluSx SINE Alu 0 312 1 2198 48 45 4 chr11 146954979 146955247 -3828306 + AluY SINE Alu 1 279 -32 245 0 0 0 chr11 146955247 146955276 -3828277 + Alu SINE Alu 251 279 -22 344 57 0 0 chr11 146955303 146955356 -3828197 + Alu SINE Alu 248 300 0 746 177 110 0 chr11 146956045 146956209 -3827344 + MIR SINE MIR 47 228 -34 431 204 121 64 chr11 146956216 146956373 -3827180 + MIR SINE MIR 62 227 -35 345 257 0 38 chr11 146958072 146958177 -3825376 + (CACG)n Simple_repeat Simple_repeat 3 103 0 216 0 0 0 chr11 146959488 146959512 -3824041 + (T)n Simple_repeat Simple_repeat 1 24 0 225 0 0 0 chr11 146959804 146959829 -3823724 + (T)n Simple_repeat Simple_repeat 1 25 0 191 114 29 0 chr11 146962478 146962513 -3821040 + GA-rich Low_complexity Low_complexity 2 37 0 411 209 113 17 chr11 146966254 146966394 -3817159 + MIR SINE MIR 16 164 -62 388 318 148 11 chr11 146966673 146966937 -3816616 - L2 LINE L2 -1 3312 3013 435 378 6 6 chr11 146967397 146967553 -3816000 - MIR3 SINE MIR -37 171 16 294 73 0 0 chr11 146967614 146967655 -3815898 + (TG)n Simple_repeat Simple_repeat 1 41 0 198 0 0 0 chr11 146967654 146967676 -3815877 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 419 330 34 15 chr11 146969132 146969317 -3814236 - MIR SINE MIR -77 131 3 1693 167 7 4 chr11 146969522 146969797 -3813756 + AluJb SINE Alu 11 286 -26 203 180 60 0 chr11 146971068 146971118 -3812435 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 2111 121 0 20 chr11 146971500 146971806 -3811747 + AluSx SINE Alu 1 300 -12 795 296 90 23 chr11 146971813 146972472 -3811081 + L1MC4a LINE L1 5176 5398 -748 2212 102 0 3 chr11 146972489 146972793 -3810760 + AluSc SINE Alu 1 303 -6 570 214 70 80 chr11 146972900 146973087 -3810466 + MIR3 SINE MIR 17 201 -7 209 323 76 14 chr11 146973859 146974014 -3809539 - MIR3 SINE MIR -72 190 5 203 273 23 45 chr11 146977429 146977517 -3806036 + MIR SINE MIR 46 131 -131 290 240 90 54 chr11 146977960 146978099 -3805454 + MIR SINE MIR 2 158 -64 632 189 22 106 chr11 146979928 146980155 -3803398 + MER3 DNA MER1_type 1 208 -1 283 348 0 0 chr11 146980593 146980682 -3802871 + MIR3 SINE MIR 117 205 -3 27 0 0 0 chr11 146980843 146980870 -3802683 + AT_rich Low_complexity Low_complexity 1 27 0 2463 156 19 24 chr11 146980945 146981362 -3802191 + MSTB LTR MaLR 8 422 -4 1990 108 106 38 chr11 146981385 146981726 -3801827 - THE1B LTR MaLR 0 364 1 193 220 288 0 chr11 146982383 146982442 -3801111 + L2 LINE L2 3202 3277 -36 183 139 23 47 chr11 146982439 146982482 -3801071 - MIR SINE MIR -4 258 217 * 512 282 92 88 chr11 146982449 146982743 -3800810 - L2 LINE L2 -19 3253 2959 198 0 0 0 chr11 146983131 146983153 -3800400 + (A)n Simple_repeat Simple_repeat 1 22 0 221 241 25 101 chr11 146983242 146983321 -3800232 + MIR SINE MIR 108 180 -82 305 356 5 69 chr11 146983585 146983637 -3799916 - MIR SINE MIR -15 247 193 2216 88 7 0 chr11 146983637 146983933 -3799620 - AluSc SINE Alu -11 298 1 305 356 5 69 chr11 146983933 146984068 -3799485 - MIR SINE MIR -69 193 72 393 296 67 0 chr11 146986491 146986626 -3796927 - MIR SINE MIR -48 214 71 457 250 83 15 chr11 146987198 146987330 -3796223 + MIR3 SINE MIR 46 186 -22 417 259 142 19 chr11 146988085 146988247 -3795306 + MIR SINE MIR 9 190 -72 360 0 0 0 chr11 146988283 146988323 -3795230 + (TG)n Simple_repeat Simple_repeat 2 41 0 558 285 77 4 chr11 146988900 146989160 -3794393 - L1ME4a LINE L1 -9 6112 5834 289 282 27 27 chr11 146990184 146990294 -3793259 - L2 LINE L2 0 3272 3163 1280 240 79 12 chr11 146991806 146992148 -3791405 - MLT1A1 LTR MaLR 0 365 1 312 389 72 0 chr11 146992582 146992721 -3790832 - L2 LINE L2 -1 3271 3123 225 0 0 0 chr11 146992860 146992885 -3790668 + (T)n Simple_repeat Simple_repeat 1 25 0 264 30 0 0 chr11 146993697 146993730 -3789823 + (CA)n Simple_repeat Simple_repeat 2 34 0 198 143 0 0 chr11 146993730 146993765 -3789788 + (GA)n Simple_repeat Simple_repeat 1 35 0 2336 83 0 6 chr11 146995148 146995461 -3788092 + AluSq SINE Alu 1 311 -2 355 297 82 51 chr11 146996434 146996629 -3786924 + MIR SINE MIR 12 212 -50 203 239 22 0 chr11 146999464 146999510 -3784043 + L2 LINE L2 3210 3256 -16 501 231 90 81 chr11 146999596 146999830 -3783723 + L2 LINE L2 3077 3312 -1 205 261 43 43 chr11 147001636 147001705 -3781848 + L3 LINE CR1 1507 1575 -2 481 320 28 11 chr11 147001976 147002154 -3781399 + MIR SINE MIR 12 192 -70 927 195 0 0 chr11 147002379 147002578 -3780975 + FRAM SINE Alu 1 199 0 598 271 239 4 chr11 147003876 147004123 -3779430 - L2 LINE L2 0 3313 3009 2268 105 0 0 chr11 147004582 147004895 -3778658 - AluSq SINE Alu 0 313 1 228 245 57 0 chr11 147005395 147005448 -3778105 - L3b LINE CR1 -121 1462 1407 417 253 7 68 chr11 147005456 147005607 -3777946 + MIR SINE MIR 8 148 -67 2263 92 0 0 chr11 147005738 147006041 -3777512 + AluY SINE Alu 1 303 -8 219 250 60 12 chr11 147006175 147006259 -3777294 - MIR3 SINE MIR -44 164 77 212 344 112 16 chr11 147006360 147006485 -3777068 - L2 LINE L2 0 3272 3136 551 250 12 41 chr11 147006925 147007097 -3776456 + L1MC5 LINE L1 7760 7926 -35 366 107 0 0 chr11 147007594 147007650 -3775903 + (TG)n Simple_repeat Simple_repeat 1 56 0 347 177 10 0 chr11 147007827 147007923 -3775630 + GA-rich Low_complexity Low_complexity 2 98 0 1084 103 4 8 chr11 147009031 147009293 -3774260 + (TTATA)n Simple_repeat Simple_repeat 1 261 0 240 221 11 32 chr11 147009295 147009390 -3774163 + (TATAA)n Simple_repeat Simple_repeat 1 93 0 286 165 9 28 chr11 147009424 147009533 -3774020 + (TATAA)n Simple_repeat Simple_repeat 1 107 0 966 111 7 39 chr11 147009546 147009699 -3773854 + Charlie3 DNA MER1_type 2559 2706 -4 190 366 140 7 chr11 147012187 147012529 -3771024 - L2 LINE L2 -266 3006 2621 307 285 86 53 chr11 147012878 147012988 -3770565 + L1 LINE L1 3142 3260 -2886 1911 131 26 10 chr11 147012988 147013293 -3770260 + AluSx SINE Alu 1 310 -2 307 285 86 53 chr11 147013293 147013333 -3770220 + L1 LINE L1 3260 3297 -2849 207 288 178 37 chr11 147015377 147015540 -3768013 + L3b LINE CR1 1193 1378 -205 478 300 146 15 chr11 147017780 147017824 -3765729 + MIR SINE MIR 16 53 -209 1625 140 21 0 chr11 147017824 147018103 -3765450 + AluJo SINE Alu 3 287 -25 478 300 146 15 chr11 147018103 147018292 -3765261 + MIR SINE MIR 53 256 -6 362 279 13 58 chr11 147018562 147018716 -3764837 + MIR SINE MIR 72 218 -44 198 253 0 0 chr11 147019169 147019268 -3764285 + CT-rich Low_complexity Low_complexity 1 99 0 628 299 144 41 chr11 147019885 147020716 -3762837 - L2 LINE L2 -10 3303 2395 264 354 146 6 chr11 147021598 147021776 -3761777 - MIR SINE MIR -12 250 48 198 118 0 0 chr11 147022169 147022203 -3761350 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 218 211 193 0 chr11 147022339 147022396 -3761157 - MIR SINE MIR -172 90 23 186 43 0 0 chr11 147023310 147023333 -3760220 + (TGGG)n Simple_repeat Simple_repeat 4 26 0 268 271 131 8 chr11 147023653 147023694 -3759859 - MIR SINE MIR -27 235 200 2309 162 59 22 chr11 147023694 147024188 -3759365 - L1MB7 LINE L1 -12 6172 5661 268 271 131 8 chr11 147024188 147024268 -3759285 - MIR SINE MIR -62 200 99 292 252 313 0 chr11 147025178 147025325 -3758228 - MIR SINE MIR -18 244 52 268 309 0 52 chr11 147026893 147026990 -3756563 - L2 LINE L2 -1 3312 3221 346 281 8 41 chr11 147028094 147028215 -3755338 + MIR SINE MIR 12 128 -134 1740 139 0 60 chr11 147028877 147029058 -3754495 + AluJb SINE Alu 1 155 -157 2570 46 0 0 chr11 147029058 147029362 -3754191 - AluY SINE Alu -7 304 1 1740 139 0 60 chr11 147029362 147029511 -3754042 + AluJb SINE Alu 155 311 -1 2460 211 82 9 chr11 147030031 147030594 -3752959 - MER90 LTR ERV1 -1 613 10 405 308 90 33 chr11 147030999 147031245 -3752308 - MIR SINE MIR -1 261 3 332 206 165 52 chr11 147032104 147032201 -3751352 + L2 LINE L2 3157 3264 -8 262 242 66 22 chr11 147032818 147032909 -3750644 + L3 LINE CR1 1203 1297 -280 194 159 0 45 chr11 147033279 147033323 -3750230 - L2 LINE L2 0 3313 3272 259 349 71 77 chr11 147033379 147033548 -3750005 + L2 LINE L2 3069 3236 -36 246 299 196 31 chr11 147033754 147033851 -3749702 + L2 LINE L2 3142 3254 -18 426 371 0 21 chr11 147036431 147036571 -3746982 + MIR3 SINE MIR 31 167 -41 649 321 54 5 chr11 147041599 147041820 -3741733 - MIR SINE MIR -13 249 18 294 276 0 19 chr11 147042155 147042260 -3741293 + (TA)n Simple_repeat Simple_repeat 1 103 0 236 233 167 11 chr11 147042330 147042420 -3741133 + L2 LINE L2 3168 3271 -1 210 202 238 36 chr11 147042429 147042513 -3741040 - MIR SINE MIR -156 106 6 296 317 114 0 chr11 147042516 147042639 -3740914 + MIR SINE MIR 70 206 -56 190 250 0 0 chr11 147042914 147042958 -3740595 - L2 LINE L2 -8 3305 3262 375 255 174 67 chr11 147043226 147043658 -3739895 - L1MC4a LINE L1 -1482 6326 5849 359 256 24 67 chr11 147044606 147044770 -3738783 - MIR SINE MIR -86 176 20 605 259 69 69 chr11 147045281 147045513 -3738040 + MIR SINE MIR 25 256 -6 261 314 23 12 chr11 147045729 147045815 -3737738 - MIR3 SINE MIR -3 205 119 494 204 111 31 chr11 147046293 147046455 -3737098 - MIR SINE MIR -26 236 62 366 253 11 0 chr11 147046467 147046558 -3736995 - MIR SINE MIR -4 258 167 359 318 68 7 chr11 147046650 147046798 -3736755 + MIR SINE MIR 46 202 -60 2187 81 0 10 chr11 147046971 147047268 -3736285 - AluSg SINE Alu -16 294 1 462 260 74 101 chr11 147047805 147047977 -3735576 - L2 LINE L2 -2 3311 3136 928 105 8 8 chr11 147047977 147048110 -3735443 + FLAM_C SINE Alu 1 133 0 462 260 74 101 chr11 147048110 147048125 -3735428 - L2 LINE L2 -177 3136 3122 1772 171 10 0 chr11 147048125 147048424 -3735129 + AluJb SINE Alu 6 307 -5 462 260 74 101 chr11 147048424 147048600 -3734953 - L2 LINE L2 -191 3122 2957 386 231 48 113 chr11 147048600 147048786 -3734767 - MER5B DNA MER1_type 0 178 5 205 237 21 75 chr11 147048897 147048990 -3734563 - MER5A DNA MER1_type -76 113 26 264 285 43 30 chr11 147049235 147049347 -3734206 + MIR SINE MIR 28 144 -64 439 273 40 51 chr11 147050125 147050245 -3733308 - MER63A DNA MER1_type -1514 174 55 2978 75 5 0 chr11 147050245 147050618 -3732935 - THE1C LTR MaLR 0 375 1 439 273 40 51 chr11 147050618 147050673 -3732880 - MER63A DNA MER1_type -1633 55 1 655 202 27 60 chr11 147050813 147050996 -3732557 - FRAM SINE Alu 0 176 1 180 314 0 0 chr11 147051029 147051080 -3732473 + L3 LINE CR1 1524 1574 -3 255 242 92 17 chr11 147053769 147053889 -3729664 - L2 LINE L2 -5 3308 3180 299 272 37 0 chr11 147054119 147054200 -3729353 + MIR SINE MIR 108 191 -71 1860 114 3 31 chr11 147055992 147056305 -3727248 - AluSx SINE Alu 0 306 2 203 327 154 0 chr11 147057166 147057276 -3726277 - L2 LINE L2 -12 3260 3134 318 26 0 0 chr11 147057607 147057646 -3725907 + (TG)n Simple_repeat Simple_repeat 1 39 0 215 204 45 0 chr11 147057775 147057819 -3725734 + CT-rich Low_complexity Low_complexity 1 46 0 409 293 84 0 chr11 147058237 147058428 -3725125 + L1MC4 LINE L1 6458 6664 -1378 1339 175 52 89 chr11 147058477 147058859 -3724694 + Tigger3b DNA MER2_type 1 368 -863 4091 131 56 0 chr11 147058861 147059542 -3724011 + Tigger3b DNA MER2_type 513 1231 0 1647 225 121 0 chr11 147059543 147059965 -3723588 + L1MC4 LINE L1 6614 7086 -956 1533 276 100 11 chr11 147059968 147060576 -3722977 + L1MC4 LINE L1 7238 7899 -143 198 0 0 0 chr11 147060669 147060691 -3722862 + (AATAG)n Simple_repeat Simple_repeat 1 22 0 192 233 0 0 chr11 147061468 147061511 -3722042 - MIR SINE MIR -182 80 38 742 171 0 0 chr11 147062714 147062831 -3720722 + FLAM_C SINE Alu 2 118 -25 546 16 0 0 chr11 147062832 147062895 -3720658 + (TAAAA)n Simple_repeat Simple_repeat 3 65 0 2163 134 49 9 chr11 147062949 147063299 -3720254 + MLT1A1 LTR MaLR 1 364 -1 31 26 0 0 chr11 147064785 147064823 -3718730 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr11 147064982 147065015 -3718538 + AT_rich Low_complexity Low_complexity 1 33 0 262 221 49 139 chr11 147066493 147066615 -3716938 + MIR3 SINE MIR 59 169 -39 463 288 106 24 chr11 147067969 147068139 -3715414 + MIR3 SINE MIR 16 199 -9 313 240 120 16 chr11 147068594 147068719 -3714834 - L3b LINE CR1 -192 1391 1254 209 281 172 23 chr11 147068748 147068876 -3714677 + L3 LINE CR1 1219 1365 -212 669 299 20 15 chr11 147069080 147069277 -3714276 + MIR3 SINE MIR 10 207 -1 525 293 59 75 chr11 147069629 147069936 -3713617 - L2 LINE L2 0 3313 3012 207 266 16 16 chr11 147070307 147070371 -3713182 + L2 LINE L2 2990 3053 -219 355 297 82 51 chr11 147071537 147071732 -3711821 + MIR SINE MIR 12 212 -50 207 239 22 0 chr11 147074567 147074613 -3708940 + L2 LINE L2 3210 3256 -16 495 232 90 77 chr11 147074700 147074933 -3708620 + L2 LINE L2 3077 3312 -1 210 261 43 43 chr11 147076739 147076808 -3706745 + L3 LINE CR1 1507 1575 -2 489 320 28 11 chr11 147077079 147077257 -3706296 + MIR SINE MIR 12 192 -70 987 199 0 0 chr11 147077482 147077681 -3705872 + FRAM SINE Alu 1 199 0 596 271 239 4 chr11 147078979 147079226 -3704327 - L2 LINE L2 0 3313 3009 2423 105 0 0 chr11 147079685 147079998 -3703555 - AluSq SINE Alu 0 313 1 224 245 57 0 chr11 147080498 147080551 -3703002 - L3b LINE CR1 -121 1462 1407 422 253 7 68 chr11 147080559 147080710 -3702843 + MIR SINE MIR 8 148 -67 2350 75 31 0 chr11 147080841 147081133 -3702420 + AluY SINE Alu 1 301 -10 1880 181 0 0 chr11 147081607 147081899 -3701654 - AluJb SINE Alu -20 292 1 26 30 0 0 chr11 147083511 147083544 -3700009 + AT_rich Low_complexity Low_complexity 1 33 0 1760 183 0 7 chr11 147083556 147083856 -3699697 - AluJb SINE Alu -12 300 3 21 0 0 0 chr11 147083985 147084006 -3699547 + AT_rich Low_complexity Low_complexity 1 21 0 465 257 183 17 chr11 147084503 147084678 -3698875 + MIR SINE MIR 59 262 0 347 177 10 0 chr11 147086324 147086420 -3697133 + CT-rich Low_complexity Low_complexity 2 98 0 366 107 0 0 chr11 147086597 147086653 -3696900 + (CA)n Simple_repeat Simple_repeat 1 56 0 556 249 6 40 chr11 147087150 147087323 -3696230 - L1MC5 LINE L1 -35 7926 7760 211 344 112 16 chr11 147087763 147087888 -3695665 + L2 LINE L2 3136 3272 0 229 250 60 12 chr11 147087989 147088073 -3695480 + MIR3 SINE MIR 77 164 -44 2357 106 3 0 chr11 147088207 147088510 -3695043 - AluSx SINE Alu -8 304 1 2207 53 0 15 chr11 147088626 147088891 -3694662 + AluY SINE Alu 39 299 -12 463 214 348 5 chr11 147088977 147089164 -3694389 - MIR SINE MIR -10 252 2 340 276 52 26 chr11 147089303 147089419 -3694134 + MIR SINE MIR 46 164 -98 367 263 0 75 chr11 147090522 147090655 -3692898 - MER5B DNA MER1_type -6 172 50 1485 142 45 0 chr11 147090679 147090947 -3692606 - L1MB3 LINE L1 -7 6176 5897 180 260 40 0 chr11 147090951 147091001 -3692552 + MER5B DNA MER1_type 119 170 -8 503 276 26 0 chr11 147091238 147091354 -3692199 + MIR SINE MIR 51 169 -93 240 59 0 0 chr11 147091807 147091841 -3691712 + (CA)n Simple_repeat Simple_repeat 1 34 0 450 0 0 0 chr11 147092428 147092478 -3691075 + (GGA)n Simple_repeat Simple_repeat 3 52 0 262 159 9 75 chr11 147092675 147092782 -3690771 + CT-rich Low_complexity Low_complexity 3 102 0 204 40 0 0 chr11 147093928 147093953 -3689600 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 2022 126 0 10 chr11 147093993 147094286 -3689267 - AluSx SINE Alu -22 290 1 306 336 39 10 chr11 147095055 147095159 -3688394 + MIR SINE MIR 24 130 -78 339 264 28 9 chr11 147095173 147095279 -3688274 - MER58C DNA MER1_type 0 215 108 2084 79 90 0 chr11 147096083 147096360 -3687193 - AluSp SINE Alu -10 303 2 1222 211 90 0 chr11 147096623 147096889 -3686664 + MER7A DNA MER2_type 2 289 -57 560 283 73 11 chr11 147096935 147097143 -3686410 + MIR SINE MIR 42 261 -1 416 358 30 15 chr11 147098027 147098228 -3685325 - MIR SINE MIR -37 225 22 300 280 89 42 chr11 147098264 147098478 -3685075 + L1ME3A LINE L1 5934 6157 -13 286 279 0 0 chr11 147098510 147098589 -3684964 + (TATATG)n Simple_repeat Simple_repeat 4 82 0 258 324 75 23 chr11 147099882 147100018 -3683535 + MIR SINE MIR 22 156 -63 1963 131 0 3 chr11 147100037 147100319 -3683234 - AluSx SINE Alu -18 294 14 206 295 103 0 chr11 147102780 147102858 -3680695 - L3 LINE CR1 -151 1426 1341 402 21 0 0 chr11 147104612 147104659 -3678894 + (TG)n Simple_repeat Simple_repeat 1 47 0 181 176 0 0 chr11 147104949 147104983 -3678570 - L2 LINE L2 -212 3060 3027 409 260 25 5 chr11 147105544 147105659 -3677894 - MIR SINE MIR -42 166 50 25 0 0 0 chr11 147106018 147106043 -3677510 + AT_rich Low_complexity Low_complexity 1 25 0 252 267 0 0 chr11 147106902 147106962 -3676591 + MIR SINE MIR 203 262 0 2045 133 10 29 chr11 147107976 147108285 -3675268 - AluSx SINE Alu -9 303 1 242 322 133 23 chr11 147109096 147109290 -3674263 - MIR SINE MIR -19 243 41 335 317 18 18 chr11 147110563 147110730 -3672823 + (CA)n Simple_repeat Simple_repeat 1 167 0 303 189 11 21 chr11 147110828 147110923 -3672630 + (CA)n Simple_repeat Simple_repeat 1 94 0 1264 143 44 99 chr11 147113662 147113713 -3669840 - MER33 DNA MER1_type -2261 324 272 2264 102 7 0 chr11 147113713 147114008 -3669545 - AluSq SINE Alu -16 297 1 1264 143 44 99 chr11 147114008 147114299 -3669254 - MER33 DNA MER1_type -2313 272 1 200 250 42 0 chr11 147115230 147115278 -3668275 - L2 LINE L2 -2 3311 3262 658 251 145 34 chr11 147115297 147115835 -3667718 - L2 LINE L2 -173 3140 2534 2359 112 0 0 chr11 147115858 147116163 -3667390 + AluSg SINE Alu 1 305 -5 320 345 68 17 chr11 147116352 147116529 -3667024 + MIR SINE MIR 33 218 -44 447 354 88 37 chr11 147116777 147117342 -3666211 + L2 LINE L2 2148 2741 -573 196 320 124 49 chr11 147117534 147117759 -3665794 - MIR SINE MIR -1 261 20 456 182 0 0 chr11 147119382 147119470 -3664083 + CT-rich Low_complexity Low_complexity 3 90 0 284 310 14 42 chr11 147119524 147119666 -3663887 + L2 LINE L2 3117 3254 -59 312 27 0 0 chr11 147119989 147120026 -3663527 + (TG)n Simple_repeat Simple_repeat 2 38 0 274 333 149 18 chr11 147120655 147120823 -3662730 + MIR3 SINE MIR 16 205 -3 1918 203 8 15 chr11 147120925 147121315 -3662238 + MLT1B LTR MaLR 4 390 0 204 167 24 0 chr11 147121446 147121488 -3662065 + T-rich Low_complexity Low_complexity 5 47 0 249 33 0 0 chr11 147121929 147121959 -3661594 + (GA)n Simple_repeat Simple_repeat 2 31 0 23 0 0 0 chr11 147122296 147122319 -3661234 + AT_rich Low_complexity Low_complexity 1 23 0 631 65 21 0 chr11 147122989 147123082 -3660471 + (GAAA)n Simple_repeat Simple_repeat 3 97 0 184 189 0 75 chr11 147123356 147123409 -3660144 - MIR SINE MIR -105 157 109 221 254 0 84 chr11 147124210 147124281 -3659272 + MER5B DNA MER1_type 107 171 -7 900 94 0 0 chr11 147125209 147125326 -3658227 - L1PA8 LINE L1 -3 6169 6053 1761 233 121 47 chr11 147125828 147126227 -3657326 - L1MD3 LINE L1 -43 7952 7584 2483 139 34 3 chr11 147126227 147126580 -3656973 - THE1B LTR MaLR 0 364 1 1761 233 121 47 chr11 147126580 147127385 -3656168 - L1MD3 LINE L1 -411 7584 6840 1825 183 47 26 chr11 147127385 147127767 -3655786 - MLT1B LTR MaLR 0 390 1 1761 233 121 47 chr11 147127767 147129229 -3654324 - L1MD3 LINE L1 -1155 6840 5024 682 165 116 0 chr11 147129229 147129350 -3654203 - AluJb SINE Alu -176 136 2 1659 232 18 60 chr11 147129351 147129863 -3653690 - L1MD3 LINE L1 -1117 5029 4540 531 324 27 14 chr11 147130325 147130547 -3653006 + MIR SINE MIR 2 226 -36 860 151 0 0 chr11 147132150 147132276 -3651277 - FLAM_C SINE Alu -7 126 1 234 286 158 56 chr11 147134516 147134712 -3648841 + MLT1K LTR MaLR 336 551 -37 603 280 58 5 chr11 147135015 147135204 -3648349 - MIR SINE MIR 0 262 64 23 0 0 0 chr11 147135208 147135231 -3648322 + AT_rich Low_complexity Low_complexity 1 23 0 545 81 0 70 chr11 147135244 147135330 -3648223 - MADE1 DNA Mariner 0 80 1 180 0 0 0 chr11 147135579 147135599 -3647954 + (TG)n Simple_repeat Simple_repeat 1 20 0 789 146 97 14 chr11 147135832 147135976 -3647577 + MER20 DNA MER1_type 64 219 0 22 0 0 0 chr11 147136573 147136595 -3646958 + AT_rich Low_complexity Low_complexity 1 22 0 354 284 173 8 chr11 147140378 147140505 -3643048 - L2 LINE L2 0 3272 3125 237 132 0 0 chr11 147140516 147140554 -3642999 + (CAATG)n Simple_repeat Simple_repeat 3 40 0 275 309 60 12 chr11 147141049 147141133 -3642420 - L2 LINE L2 -83 3189 3102 455 324 89 9 chr11 147142623 147142848 -3640705 + L2 LINE L2 1292 1534 -1780 247 240 96 80 chr11 147142870 147142995 -3640558 - MIR SINE MIR -65 143 17 484 277 205 29 chr11 147143128 147143523 -3640030 + MLT1K LTR MaLR 104 613 -2 341 246 92 7 chr11 147143531 147143673 -3639880 - L1ME4a LINE L1 -2 6119 5966 2680 107 52 28 chr11 147143917 147144339 -3639214 - MER57B LTR ERV1 0 434 3 197 319 0 0 chr11 147144397 147144444 -3639109 - L2 LINE L2 -92 3180 3134 511 296 155 47 chr11 147144569 147145368 -3638185 - L2 LINE L2 -208 3064 2093 2585 65 0 0 chr11 147145368 147145678 -3637875 + AluY SINE Alu 1 310 -1 511 296 155 47 chr11 147145678 147146053 -3637500 - L2 LINE L2 -1179 2093 1760 729 211 29 40 chr11 147146060 147146111 -3637442 + MER5B DNA MER1_type 4 54 -124 1833 121 26 0 chr11 147146111 147146219 -3637334 + AluSx SINE Alu 20 124 -188 334 0 43 0 chr11 147146219 147146265 -3637288 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1833 121 26 0 chr11 147146265 147146428 -3637125 + AluSx SINE Alu 124 298 -14 729 211 29 40 chr11 147146428 147146551 -3637002 + MER5B DNA MER1_type 54 176 -2 1990 147 13 3 chr11 147146592 147146719 -3636834 + AluSx SINE Alu 2 126 -186 795 75 0 0 chr11 147146719 147146826 -3636727 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 1990 147 13 3 chr11 147146826 147147005 -3636548 + AluSx SINE Alu 126 311 -1 22 0 0 0 chr11 147147091 147147113 -3636440 + AT_rich Low_complexity Low_complexity 1 22 0 230 266 38 13 chr11 147147473 147147552 -3636001 - HAL1b LINE L1 -767 581 501 347 337 95 34 chr11 147147562 147148043 -3635510 - L1MEd LINE L1 -1020 1470 865 2205 116 0 10 chr11 147148044 147148354 -3635199 - AluSx SINE Alu 0 312 6 297 89 0 0 chr11 147148355 147148400 -3635153 + (TC)n Simple_repeat Simple_repeat 2 46 0 553 92 0 13 chr11 147149563 147149639 -3633914 + AluJ/FLAM SINE Alu 21 95 -217 252 184 0 0 chr11 147149676 147149725 -3633828 + (TA)n Simple_repeat Simple_repeat 2 50 0 2549 247 25 72 chr11 147149725 147150555 -3632998 + MER21B LTR ERV1 15 805 -58 2315 120 35 35 chr11 147150647 147151022 -3632531 + THE1C LTR MaLR 1 375 0 424 282 27 47 chr11 147151156 147151305 -3632248 - L2 LINE L2 -1 3312 3167 2233 152 33 30 chr11 147151377 147151740 -3631813 + THE1B LTR MaLR 1 364 0 711 275 36 27 chr11 147151917 147152139 -3631414 + MIR SINE MIR 13 236 -26 331 343 0 7 chr11 147152154 147152294 -3631259 + HAL1 LINE L1 1391 1529 -978 224 205 0 0 chr11 147152925 147152964 -3630589 + polypyrimidine Low_complexity Low_complexity 3 41 0 257 278 16 56 chr11 147152964 147153090 -3630463 + L1M4c LINE L1 2362 2482 -3902 208 266 31 0 chr11 147153448 147153512 -3630041 + (CATATA)n Simple_repeat Simple_repeat 5 70 0 21 36 0 0 chr11 147153644 147153672 -3629881 + AT_rich Low_complexity Low_complexity 1 28 0 2019 220 107 70 chr11 147153806 147154431 -3629122 + Zaphod DNA AcHobo 174 774 -3257 234 0 0 0 chr11 147154431 147154457 -3629096 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1299 35 0 0 chr11 147154457 147154601 -3628952 - L1PA5 LINE L1 -12 6142 5999 2019 220 107 70 chr11 147154601 147154750 -3628803 + Zaphod DNA AcHobo 773 978 -3053 1517 235 51 12 chr11 147154745 147155175 -3628378 + Zaphod DNA AcHobo 3585 4031 0 * 808 239 153 0 chr11 147155711 147155920 -3627633 + MIR SINE MIR 1 241 -21 194 263 70 18 chr11 147155959 147156016 -3627537 - L2 LINE L2 -1 3271 3212 224 345 45 68 chr11 147156023 147156243 -3627310 - L2 LINE L2 -27 3245 3031 212 308 0 15 chr11 147156712 147156777 -3626776 + CT-rich Low_complexity Low_complexity 1 64 0 290 194 15 0 chr11 147157385 147157452 -3626101 + CT-rich Low_complexity Low_complexity 1 68 0 276 338 123 40 chr11 147157487 147157836 -3625717 - L2 LINE L2 -25 3247 2870 219 327 0 0 chr11 147159112 147159164 -3624389 + L2 LINE L2 3207 3258 -14 18189 171 36 45 chr11 147159349 147166221 -3617332 - L1PA16 LINE L1 -3 6866 1 233 238 12 60 chr11 147166388 147166472 -3617081 - MER96 DNA MER1_type? -88 87 8 1589 188 68 70 chr11 147166903 147167255 -3616298 + MLT2D LTR ERVL 1 353 -61 2572 135 3 6 chr11 147167255 147167619 -3615934 + THE1B LTR MaLR 1 363 -1 1589 188 68 70 chr11 147167619 147167681 -3615872 + MLT2D LTR ERVL 353 414 0 24 0 0 0 chr11 147167815 147167839 -3615714 + AT_rich Low_complexity Low_complexity 1 24 0 244 361 161 3 chr11 147167874 147168215 -3615338 + L2 LINE L2 589 983 -2331 218 319 159 9 chr11 147168279 147168392 -3615161 + L2 LINE L2 3184 3313 0 195 351 26 35 chr11 147168393 147168507 -3615046 + L2 LINE L2 1094 1206 -2108 2667 153 18 4 chr11 147171014 147171471 -3612082 + L1MB1 LINE L1 5432 5894 -274 587 335 60 0 chr11 147171693 147171926 -3611627 + MIR SINE MIR 2 248 -14 198 235 39 0 chr11 147171938 147171989 -3611564 - MIR SINE MIR -116 146 94 214 310 99 21 chr11 147175879 147176121 -3607432 + L2 LINE L2 2625 2885 -429 317 291 114 19 chr11 147176592 147176750 -3606803 - MIR SINE MIR -67 195 23 22 35 0 0 chr11 147179319 147179348 -3604205 + AT_rich Low_complexity Low_complexity 1 29 0 235 288 246 0 chr11 147179935 147180053 -3603500 - MIR3 SINE MIR -55 153 7 414 301 79 15 chr11 147180298 147180501 -3603052 + MIR SINE MIR 4 219 -43 2189 126 3 0 chr11 147182879 147183188 -3600365 + AluSx SINE Alu 1 310 -2 323 294 0 12 chr11 147184045 147184130 -3599423 + L2 LINE L2 3230 3313 0 883 213 0 5 chr11 147184275 147184463 -3599090 - MER3 DNA MER1_type 0 209 23 1817 161 3 56 chr11 147184875 147185197 -3598356 + AluJo SINE Alu 3 307 -5 404 267 23 0 chr11 147186082 147186168 -3597385 - MIR3 SINE MIR -23 185 98 596 250 8 8 chr11 147186236 147186368 -3597185 - MIR SINE MIR -95 167 36 254 178 356 22 chr11 147186432 147186522 -3597031 - MIR SINE MIR -75 187 68 275 364 9 9 chr11 147187943 147188053 -3595500 - L2 LINE L2 -5 3308 3199 262 213 0 0 chr11 147188599 147188646 -3594907 - MIR SINE MIR -142 120 74 2316 97 37 0 chr11 147190132 147190431 -3593122 + AluSq SINE Alu 3 312 -1 261 269 143 8 chr11 147190558 147190677 -3592876 + MIR SINE MIR 72 206 -56 225 389 56 9 chr11 147190815 147190923 -3592630 + MIR SINE MIR 40 152 -56 374 177 114 0 chr11 147191029 147191108 -3592445 - MLT1G1 LTR MaLR -1 589 502 766 211 154 81 chr11 147191117 147191415 -3592138 - MLT1G1 LTR MaLR -195 400 81 783 173 87 29 chr11 147193115 147193288 -3590265 - AluJb SINE Alu -9 303 121 2341 72 0 7 chr11 147193306 147193596 -3589957 - AluY SINE Alu -23 288 1 987 135 7 0 chr11 147193597 147193745 -3589808 + AluJb SINE Alu 163 311 -1 2212 213 83 11 chr11 147194265 147194828 -3588725 - MER90 LTR ERV1 -1 613 10 394 308 90 33 chr11 147195233 147195479 -3588074 - MIR SINE MIR -1 261 3 296 227 165 52 chr11 147196339 147196436 -3587117 + L2 LINE L2 3157 3264 -8 293 231 66 22 chr11 147197053 147197144 -3586409 + L3 LINE CR1 1203 1297 -280 188 159 0 45 chr11 147197514 147197558 -3585995 - L2 LINE L2 0 3313 3272 257 349 71 77 chr11 147197614 147197783 -3585770 + L2 LINE L2 3069 3236 -36 220 264 0 57 chr11 147197988 147198041 -3585512 + L2 LINE L2 3142 3191 -81 396 350 14 36 chr11 147200664 147200804 -3582749 + MIR3 SINE MIR 31 167 -41 387 0 0 0 chr11 147205551 147205594 -3577959 + (CA)n Simple_repeat Simple_repeat 2 44 0 315 0 0 0 chr11 147205593 147205628 -3577925 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 397 254 196 0 chr11 147206732 147206870 -3576683 - MIR SINE MIR -74 188 24 192 298 221 0 chr11 147206944 147207048 -3576505 - MIR SINE MIR -8 254 128 644 160 0 0 chr11 147207504 147207610 -3575943 + FLAM_A SINE Alu 37 142 0 222 305 24 0 chr11 147210211 147210293 -3573260 + CT-rich Low_complexity Low_complexity 2 85 0 4180 185 30 58 chr11 147210365 147211245 -3572308 - L1MD1 LINE L1 0 6242 5432 2487 99 0 0 chr11 147211245 147211549 -3572004 - AluSx SINE Alu -8 304 1 4180 185 30 58 chr11 147211549 147212503 -3571050 - L1MD1 LINE L1 -810 5432 4453 410 287 180 0 chr11 147212513 147212663 -3570890 + MIR SINE MIR 64 240 -22 1807 132 28 21 chr11 147212822 147213131 -3570422 - AluSx SINE Alu 0 312 1 774 254 95 30 chr11 147213249 147213496 -3570057 + MIR SINE MIR 4 262 0 637 332 29 5 chr11 147215317 147215525 -3568028 + MIR SINE MIR 7 219 -43 795 266 107 49 chr11 147217000 147217502 -3566051 + Charlie8 DNA MER1_type 1 520 -1897 472 282 141 15 chr11 147218134 147218340 -3565213 + MIR SINE MIR 31 262 0 180 266 31 0 chr11 147218609 147218673 -3564880 + MER5B DNA MER1_type 106 171 -7 296 220 70 30 chr11 147218677 147218777 -3564776 + MER5A DNA MER1_type 3 106 -83 182 388 15 0 chr11 147218852 147218919 -3564634 + L2 LINE L2 3203 3270 -2 265 248 110 18 chr11 147219340 147219449 -3564104 + MIR SINE MIR 32 150 -112 482 287 164 5 chr11 147219623 147219818 -3563735 - MIR SINE MIR -20 242 17 2454 216 61 7 chr11 147219842 147220430 -3563123 - MLT1E3 LTR MaLR 0 624 5 420 285 8 8 chr11 147221315 147221438 -3562115 + L2 LINE L2 3191 3313 0 211 304 33 11 chr11 147221609 147221701 -3561852 + MIR SINE MIR 57 150 -112 184 308 10 58 chr11 147221835 147221939 -3561614 - MIR SINE MIR -111 151 53 1814 217 81 28 chr11 147222796 147223266 -3560287 - LTR42 LTR ERVL 0 495 1 467 257 49 14 chr11 147223525 147223669 -3559884 + MIR SINE MIR 114 262 0 196 259 12 74 chr11 147223870 147223951 -3559602 + MER5A DNA MER1_type 98 173 -16 247 268 89 27 chr11 147224052 147224164 -3559389 + MIR SINE MIR 19 137 -71 484 267 21 75 chr11 147224166 147224353 -3559200 - L2 LINE L2 0 3313 3137 437 254 25 42 chr11 147224531 147224649 -3558904 - L2 LINE L2 0 3272 3157 381 302 40 85 chr11 147225894 147226009 -3557544 - MIR SINE MIR -3 259 159 2318 110 0 0 chr11 147226009 147226317 -3557236 - AluSg SINE Alu -2 308 1 381 302 40 85 chr11 147226317 147226449 -3557104 - MIR SINE MIR -103 159 23 272 267 13 0 chr11 147226502 147226577 -3556976 + MER103 DNA DNA 1 76 -90 205 280 0 0 chr11 147227051 147227101 -3556452 + CT-rich Low_complexity Low_complexity 3 52 0 227 297 237 17 chr11 147228078 147228196 -3555357 + MIR SINE MIR 45 188 -74 195 100 0 0 chr11 147228877 147228907 -3554646 + (TG)n Simple_repeat Simple_repeat 1 30 0 354 278 122 0 chr11 147229154 147229269 -3554284 + L2 LINE L2 3144 3272 0 492 111 0 0 chr11 147229279 147229360 -3554193 + (TGGA)n Simple_repeat Simple_repeat 4 84 0 842 161 6 0 chr11 147229376 147229550 -3554003 + (TGGA)n Simple_repeat Simple_repeat 1 175 0 453 66 0 0 chr11 147229587 147229648 -3553905 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 1224 89 0 0 chr11 147229687 147229867 -3553686 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 414 0 0 0 chr11 147231091 147231137 -3552416 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 2487 78 0 0 chr11 147231274 147231569 -3551984 + AluY SINE Alu 1 295 -16 1125 132 0 18 chr11 147233173 147233340 -3550213 - AluSg/x SINE Alu -18 294 131 221 291 13 25 chr11 147234147 147234226 -3549327 - MIR SINE MIR -122 140 63 2502 71 0 7 chr11 147235759 147236067 -3547486 + AluY SINE Alu 1 306 -5 2364 110 0 3 chr11 147236543 147236851 -3546702 - AluSx SINE Alu -5 307 1 448 297 116 46 chr11 147237473 147237557 -3545996 - L2 LINE L2 0 3313 3236 1708 188 30 22 chr11 147237557 147237919 -3545634 - MLT1A1 LTR MaLR 0 365 1 448 297 116 46 chr11 147237919 147238265 -3545288 - L2 LINE L2 -77 3236 2853 2270 105 13 3 chr11 147239142 147239448 -3544105 + AluSc SINE Alu 1 309 0 337 296 87 0 chr11 147239595 147239710 -3543843 - L2 LINE L2 -7 3265 3141 308 310 104 70 chr11 147240527 147241027 -3542526 - L2 LINE L2 -704 2610 2094 225 0 0 0 chr11 147242485 147242510 -3541043 + (T)n Simple_repeat Simple_repeat 1 25 0 461 113 34 45 chr11 147242621 147242798 -3540755 + (TTATA)n Simple_repeat Simple_repeat 3 177 0 2542 122 13 10 chr11 147242834 147243229 -3540324 - MER1A DNA MER1_type -99 430 35 1152 191 75 66 chr11 147243977 147244339 -3539214 + MLT1A1 LTR MaLR 1 365 0 641 264 84 10 chr11 147244761 147245060 -3538493 + LTR16B LTR ERVL 138 458 -6 264 234 13 13 chr11 147246104 147246181 -3537372 + HAL1 LINE L1 294 370 -2137 1047 296 177 13 chr11 147246184 147246884 -3536669 + HAL1 LINE L1 424 1238 -1269 286 299 125 0 chr11 147246912 147247056 -3536497 + LTR16B LTR ERVL 56 217 -247 272 295 90 6 chr11 147247087 147247253 -3536300 + LTR16B LTR ERVL 284 463 -1 1889 266 111 33 chr11 147247257 147248155 -3535398 + HAL1 LINE L1 1237 2204 -303 273 320 39 39 chr11 147249442 147249595 -3533958 - L2 LINE L2 -1 3312 3160 221 234 0 0 chr11 147251073 147251120 -3532433 - L3 LINE CR1 -1 1576 1530 234 366 49 14 chr11 147251171 147251313 -3532240 - L3 LINE CR1 -451 1126 980 809 92 15 61 chr11 147251379 147251510 -3532043 + AluSp/q SINE Alu 174 298 -15 187 306 87 83 chr11 147252151 147252393 -3531160 + L2 LINE L2 3030 3272 0 298 351 61 12 chr11 147253722 147253887 -3529666 + MIR SINE MIR 12 184 -78 5257 256 131 30 chr11 147256160 147257938 -3525615 + HAL1 LINE L1 1 2059 -448 2082 139 0 32 chr11 147257938 147258247 -3525306 + AluSx SINE Alu 1 299 -13 5257 256 131 30 chr11 147258247 147258737 -3524816 + HAL1 LINE L1 2059 2498 -9 2397 52 21 3 chr11 147258743 147259029 -3524524 - AluSc SINE Alu -18 291 1 367 260 178 20 chr11 147260685 147260831 -3522722 - MER5A DNA MER1_type -7 182 14 537 256 133 0 chr11 147260935 147261115 -3522438 - MER3 DNA MER1_type -5 204 1 183 286 0 0 chr11 147261162 147261211 -3522342 + L2 LINE L2 3145 3193 -79 499 229 0 49 chr11 147261247 147261369 -3522184 - L2 LINE L2 -1 3271 3156 1572 180 97 48 chr11 147261572 147261822 -3521731 - MLT1B LTR MaLR 0 390 115 2001 115 49 0 chr11 147261822 147262108 -3521445 - AluSx SINE Alu -12 300 1 1572 180 97 48 chr11 147262108 147262229 -3521324 - MLT1B LTR MaLR -275 115 1 325 280 76 15 chr11 147262304 147262436 -3521117 + MIR SINE MIR 102 241 -21 204 67 0 0 chr11 147262970 147263000 -3520553 + (TG)n Simple_repeat Simple_repeat 2 31 0 589 126 0 0 chr11 147264529 147264616 -3518937 - AluS SINE Alu -225 88 2 262 100 0 0 chr11 147264642 147264682 -3518871 - MADE1 DNA Mariner -35 45 6 306 344 0 0 chr11 147265381 147265474 -3518079 + MER5A DNA MER1_type 57 149 -40 263 339 111 38 chr11 147265677 147265966 -3517587 - L2 LINE L2 -912 2402 2093 2041 136 0 17 chr11 147266102 147266397 -3517156 + AluSx SINE Alu 1 290 -22 3583 111 15 8 chr11 147266904 147267427 -3516126 - MER1A DNA MER1_type 0 527 1 696 318 24 8 chr11 147267433 147267688 -3515865 - MIR SINE MIR 0 262 4 530 328 80 40 chr11 147269080 147269331 -3514222 + L1MEd LINE L1 569 809 -5323 2274 114 0 7 chr11 147269331 147269639 -3513914 + AluSq SINE Alu 1 306 -7 530 328 80 40 chr11 147269639 147269771 -3513782 + L1MEd LINE L1 809 934 -5198 2190 88 29 0 chr11 147269771 147270045 -3513508 + AluSc SINE Alu 1 282 -27 530 328 80 40 chr11 147270045 147270146 -3513407 + L1MEd LINE L1 934 1030 -5102 933 243 114 37 chr11 147270146 147270549 -3513004 + MER57B LTR ERV1 1 434 0 530 328 80 40 chr11 147270549 147270607 -3512946 + L1MEd LINE L1 1030 1128 -5004 662 237 7 0 chr11 147270712 147270851 -3512702 + MLT1A2 LTR MaLR 235 374 0 723 219 5 52 chr11 147271099 147271291 -3512262 - MER53 DNA DNA 0 189 7 192 154 26 0 chr11 147271638 147271677 -3511876 - MER5A DNA MER1_type -87 102 63 1871 101 116 8 chr11 147271690 147271957 -3511596 + AluSg SINE Alu 1 296 -14 769 259 39 8 chr11 147272938 147273193 -3510360 + LTR16B LTR ERVL 190 452 -12 868 294 69 30 chr11 147273713 147274077 -3509476 - LTR16C LTR ERVL -2 489 112 605 95 0 0 chr11 147274533 147274628 -3508925 - AluSg/x SINE Alu -2 310 216 276 217 43 0 chr11 147274839 147274908 -3508645 - HsTC2 DNA Tc2 -4 1894 1823 733 265 65 29 chr11 147274976 147275221 -3508332 - MIR SINE MIR 0 262 9 403 228 129 102 chr11 147279437 147279801 -3503752 + MLT1A2 LTR MaLR 1 374 0 261 308 71 30 chr11 147280310 147280479 -3503074 + L2 LINE L2 2916 3091 -181 452 188 47 16 chr11 147280545 147280673 -3502880 + LTR41 LTR ERVL 1 132 -641 211 241 37 0 chr11 147281123 147281177 -3502376 + L2 LINE L2 3200 3255 -17 191 299 0 103 chr11 147281439 147281519 -3502034 + MIR SINE MIR 19 85 -123 621 224 89 34 chr11 147281519 147281698 -3501855 + MER5A DNA MER1_type 1 189 0 191 299 0 103 chr11 147281698 147281734 -3501819 + MIR SINE MIR 85 123 -85 1973 140 10 29 chr11 147283336 147283644 -3499909 - AluSx SINE Alu -10 302 1 240 319 130 23 chr11 147284451 147284649 -3498904 - MIR SINE MIR -15 247 41 335 317 18 18 chr11 147285922 147286089 -3497464 + (CA)n Simple_repeat Simple_repeat 1 167 0 303 189 11 21 chr11 147286187 147286282 -3497271 + (CA)n Simple_repeat Simple_repeat 1 94 0 1175 149 44 99 chr11 147289021 147289072 -3494481 - MER33 DNA MER1_type -2261 324 272 2286 99 7 0 chr11 147289072 147289366 -3494187 - AluSq SINE Alu -17 296 1 1175 149 44 99 chr11 147289366 147289657 -3493896 - MER33 DNA MER1_type -2313 272 1 570 269 129 36 chr11 147290588 147291193 -3492360 - L2 LINE L2 -2 3270 2534 2355 110 0 0 chr11 147291216 147291517 -3492036 + AluSg SINE Alu 1 301 -9 318 339 68 17 chr11 147291706 147291883 -3491670 + MIR SINE MIR 33 218 -44 366 365 83 32 chr11 147292131 147292696 -3490857 + L2 LINE L2 2148 2741 -573 222 242 0 61 chr11 147294362 147294428 -3489125 - MIR SINE MIR -64 144 83 241 206 73 0 chr11 147294466 147294534 -3489019 + MIR SINE MIR 120 192 -70 1478 172 64 0 chr11 147294791 147294916 -3488637 + AluJb SINE Alu 1 117 -195 678 25 0 0 chr11 147294916 147294996 -3488557 + (GAAA)n Simple_repeat Simple_repeat 4 83 0 1478 172 64 0 chr11 147294996 147295120 -3488433 + AluJb SINE Alu 117 266 -46 259 244 126 25 chr11 147295338 147295457 -3488096 + MIR SINE MIR 131 261 -1 1955 144 35 50 chr11 147295495 147295891 -3487662 + MLT1B LTR MaLR 1 390 0 378 0 0 0 chr11 147297760 147297802 -3485751 + (CA)n Simple_repeat Simple_repeat 1 42 0 488 283 162 0 chr11 147299247 147299445 -3484108 - MIR SINE MIR -21 241 12 357 264 84 75 chr11 147299523 147299762 -3483791 + MIR SINE MIR 11 251 -11 2047 155 0 0 chr11 147299762 147300065 -3483488 + AluSx SINE Alu 1 303 -9 1422 184 28 78 chr11 147300075 147300226 -3483327 + AluJb SINE Alu 1 129 -183 2437 71 0 7 chr11 147300226 147300520 -3483033 + AluY SINE Alu 18 309 -2 1422 184 28 78 chr11 147300520 147300689 -3482864 + AluJb SINE Alu 129 305 -7 837 228 194 70 chr11 147302332 147302688 -3480865 + MLT1G1 LTR MaLR 1 400 -195 378 177 114 0 chr11 147302697 147302776 -3480777 + MLT1G1 LTR MaLR 502 589 -1 209 389 56 9 chr11 147302882 147302990 -3480563 - MIR SINE MIR -56 152 40 235 269 143 8 chr11 147303128 147303247 -3480306 - MIR SINE MIR -56 206 72 2329 97 37 0 chr11 147303374 147303673 -3479880 - AluSq SINE Alu -1 312 3 250 213 0 0 chr11 147305158 147305205 -3478348 + MIR SINE MIR 74 120 -142 256 364 9 9 chr11 147305751 147305861 -3477692 + L2 LINE L2 3199 3308 -5 234 178 356 22 chr11 147307282 147307372 -3476181 + MIR SINE MIR 68 187 -75 598 226 8 15 chr11 147307436 147307569 -3475984 + MIR SINE MIR 36 167 -95 357 279 23 0 chr11 147307637 147307723 -3475830 + MIR3 SINE MIR 98 185 -23 1864 153 3 56 chr11 147308607 147308928 -3474625 - AluJo SINE Alu -6 306 3 902 213 0 5 chr11 147309340 147309528 -3474025 + MER3 DNA MER1_type 23 209 0 280 306 0 12 chr11 147309673 147309758 -3473795 - L2 LINE L2 0 3313 3230 2210 123 3 0 chr11 147310615 147310924 -3472629 - AluSx SINE Alu -2 310 1 386 325 69 5 chr11 147313302 147313505 -3470048 - MIR SINE MIR -43 219 4 206 288 252 0 chr11 147313757 147313868 -3469685 + MIR3 SINE MIR 15 153 -55 22 35 0 0 chr11 147314455 147314484 -3469069 + AT_rich Low_complexity Low_complexity 1 29 0 196 281 122 50 chr11 147316943 147317082 -3466471 - MIR3 SINE MIR -59 149 1 391 198 111 0 chr11 147317681 147317762 -3465791 - 5S rRNA rRNA -31 90 1 617 290 16 5 chr11 147318646 147318832 -3464721 + MER5A DNA MER1_type 2 189 0 492 224 39 51 chr11 147318869 147319025 -3464528 - MER103 DNA DNA -10 156 3 545 302 58 36 chr11 147319328 147319636 -3463917 + L2 LINE L2 2997 3311 -2 2040 119 3 7 chr11 147319997 147320310 -3463243 - AluSx SINE Alu 0 312 5 293 123 15 0 chr11 147320459 147320524 -3463029 + T-rich Low_complexity Low_complexity 2 67 0 289 242 265 8 chr11 147321729 147321861 -3461692 + MIR SINE MIR 81 246 -16 186 330 68 0 chr11 147323631 147323719 -3459834 + MIR3 SINE MIR 112 205 -3 352 282 117 0 chr11 147324230 147324333 -3459220 - MER63A DNA MER1_type 0 210 96 550 289 168 0 chr11 147324690 147324898 -3458655 - MIR SINE MIR 0 262 20 2171 86 0 11 chr11 147326671 147326949 -3456604 + AluSx SINE Alu 1 275 -37 618 167 0 0 chr11 147377119 147377221 -3406332 + AluJb SINE Alu 1 102 -210 2290 112 0 0 chr11 147377283 147377586 -3405967 + AluSq SINE Alu 1 303 -10 1091 177 0 11 chr11 147377855 147378041 -3405512 + AluJb SINE Alu 112 295 -17 23 92 0 0 chr11 147378160 147378225 -3405328 + AT_rich Low_complexity Low_complexity 1 65 0 707 130 30 0 chr11 147378398 147378498 -3405055 + U6 snRNA snRNA 1 103 -4 25 0 0 0 chr11 147378498 147378523 -3405030 + AT_rich Low_complexity Low_complexity 1 25 0 2064 103 40 30 chr11 147378932 147379232 -3404321 - AluSq SINE Alu -10 303 1 3258 224 36 44 chr11 147379232 147379634 -3403919 - L1M4 LINE L1 -1388 4758 4355 1541 190 17 24 chr11 147379634 147379924 -3403629 + AluJo SINE Alu 7 294 -18 3258 224 36 44 chr11 147379924 147380482 -3403071 - L1M4 LINE L1 -1791 4355 3805 2684 33 3 0 chr11 147380622 147380929 -3402624 - AluY SINE Alu -3 308 1 21 36 0 0 chr11 147381382 147381410 -3402143 + AT_rich Low_complexity Low_complexity 1 28 0 386 325 41 12 chr11 147381511 147381680 -3401873 + L2 LINE L2 2881 3054 -218 1266 258 91 49 chr11 147382518 147383302 -3400251 - L2 LINE L2 0 3313 2503 2456 31 42 0 chr11 147383334 147383621 -3399932 - AluY SINE Alu -12 299 1 5391 179 39 10 chr11 147383621 147384772 -3398781 - L1 LINE L1 -2202 3944 2761 216 0 0 0 chr11 147384974 147384998 -3398555 + (A)n Simple_repeat Simple_repeat 1 24 0 354 279 140 17 chr11 147385147 147385326 -3398227 - MIR SINE MIR -38 224 24 2418 33 0 0 chr11 147385465 147385735 -3397818 + L1PA5 LINE L1 5883 6152 -2 281 296 79 77 chr11 147385857 147386172 -3397381 + L1ME LINE L1 5412 5730 -391 1981 154 0 3 chr11 147386172 147386478 -3397075 + AluJb SINE Alu 1 305 -7 281 296 79 77 chr11 147386478 147386591 -3396962 + L1ME LINE L1 5730 5841 -280 241 296 159 0 chr11 147386915 147387003 -3396550 - L2 LINE L2 -21 3292 3191 489 229 0 10 chr11 147387015 147387111 -3396442 + Tigger5 DNA MER2_type 1 95 -2228 2156 101 11 0 chr11 147387111 147387398 -3396155 - AluSx SINE Alu -22 290 1 248 288 45 0 chr11 147387768 147387834 -3395719 - L2 LINE L2 0 3272 3204 378 158 0 0 chr11 147387848 147387897 -3395656 + (TA)n Simple_repeat Simple_repeat 2 53 -24 375 23 0 0 chr11 147387897 147387941 -3395612 + (TG)n Simple_repeat Simple_repeat 2 45 0 378 158 0 0 chr11 147387941 147387967 -3395586 + (TA)n Simple_repeat Simple_repeat 52 77 0 615 264 74 23 chr11 147391366 147391582 -3391971 - MIR SINE MIR -16 246 20 375 23 0 0 chr11 147391598 147391642 -3391911 + (CA)n Simple_repeat Simple_repeat 1 44 0 3285 51 3 5 chr11 147391648 147392037 -3391516 - L1PA7 LINE L1 -6 6148 5761 181 385 51 34 chr11 147392370 147392487 -3391066 + L2 LINE L2 3116 3234 -38 180 111 0 0 chr11 147393996 147394023 -3389530 + (CTCA)n Simple_repeat Simple_repeat 1 27 0 192 312 97 11 chr11 147394023 147394116 -3389437 - L2 LINE L2 -10 3303 3203 213 39 0 0 chr11 147394505 147394531 -3389022 + (CCA)n Simple_repeat Simple_repeat 1 26 0 2108 97 0 35 chr11 147394576 147394866 -3388687 + AluSq SINE Alu 1 280 -33 180 0 0 0 chr11 147394868 147394888 -3388665 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 25 0 0 0 chr11 147395297 147395322 -3388231 + AT_rich Low_complexity Low_complexity 1 25 0 707 130 30 0 chr11 147395322 147395422 -3388131 - U6 snRNA snRNA -4 103 1 23 92 0 0 chr11 147395594 147395659 -3387894 + AT_rich Low_complexity Low_complexity 1 65 0 1118 172 0 11 chr11 147395778 147395964 -3387589 - AluJb SINE Alu -17 295 112 2317 112 0 0 chr11 147396233 147396536 -3387017 - AluSq SINE Alu -10 303 1 669 168 0 0 chr11 147396598 147396699 -3386854 - AluJb SINE Alu -210 102 2 1491 205 7 17 chr11 147397289 147397591 -3385962 - AluJo SINE Alu -13 299 1 2029 143 0 0 chr11 147397642 147397929 -3385624 + AluJb SINE Alu 5 291 -21 305 340 25 56 chr11 147398176 147398373 -3385180 - L1ME LINE L1 -626 5495 5305 1593 193 17 7 chr11 147398868 147399158 -3384395 - AluJb SINE Alu -17 295 3 947 120 71 66 chr11 147399809 147399992 -3383561 + AluJo SINE Alu 113 296 -16 6611 133 23 32 chr11 147400748 147401829 -3381724 + MER11C LTR ERVK 1 1071 0 6826 115 29 7 chr11 147402569 147403664 -3379889 - L1MA2 LINE L1 -4 6300 5184 317 338 45 8 chr11 147404065 147404198 -3379355 + MER5A DNA MER1_type 3 140 -49 275 339 111 38 chr11 147404410 147404699 -3378854 - L2 LINE L2 -912 2402 2093 1997 136 0 17 chr11 147404835 147405130 -3378423 + AluSx SINE Alu 1 290 -22 3950 111 15 8 chr11 147405637 147406160 -3377393 - MER1A DNA MER1_type 0 527 1 682 317 21 8 chr11 147406181 147406421 -3377132 - MIR SINE MIR -16 246 4 440 283 87 85 chr11 147407834 147408069 -3375484 + L1MEd LINE L1 587 820 -5490 2221 114 0 7 chr11 147408069 147408377 -3375176 + AluSq SINE Alu 1 306 -7 440 283 87 85 chr11 147408377 147408509 -3375044 + L1MEd LINE L1 820 950 -5360 2137 88 29 0 chr11 147408509 147408783 -3374770 + AluSc SINE Alu 1 282 -27 440 283 87 85 chr11 147408783 147408884 -3374669 + L1MEd LINE L1 950 1049 -5261 1117 243 114 37 chr11 147408884 147409287 -3374266 + MER57B LTR ERV1 1 434 0 440 283 87 85 chr11 147409287 147409765 -3373788 + L1MEd LINE L1 1049 1525 -4785 1866 142 25 0 chr11 147409765 147410040 -3373513 + AluSx SINE Alu 1 282 -30 281 26 0 26 chr11 147410044 147410083 -3373470 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 440 283 87 85 chr11 147410083 147410190 -3373363 + L1MEd LINE L1 1527 1669 -4641 445 237 17 8 chr11 147410211 147410329 -3373224 + L1M4 LINE L1 5122 5240 -906 29 0 0 0 chr11 147410879 147410908 -3372645 + AT_rich Low_complexity Low_complexity 1 29 0 1860 181 90 55 chr11 147411431 147411918 -3371635 - MLT1D LTR MaLR 0 505 2 407 194 10 0 chr11 147411970 147412073 -3371480 + (TG)n Simple_repeat Simple_repeat 1 104 0 509 240 7 0 chr11 147412093 147412247 -3371306 + (TG)n Simple_repeat Simple_repeat 1 155 0 2046 234 143 43 chr11 147412267 147413255 -3370298 + HAL1 LINE L1 824 1909 -598 836 208 87 70 chr11 147413388 147413700 -3369853 + HAL1 LINE L1 2181 2497 -10 316 281 34 41 chr11 147413821 147413967 -3369586 - MIR SINE MIR -41 221 77 183 394 14 0 chr11 147414010 147414081 -3369472 - MIR SINE MIR -118 90 19 2096 133 3 0 chr11 147414105 147414413 -3369140 - AluSq SINE Alu -4 309 1 211 217 132 70 chr11 147414780 147414909 -3368644 - MER5B DNA MER1_type 0 178 42 288 0 0 0 chr11 147415178 147415210 -3368343 + (A)n Simple_repeat Simple_repeat 1 32 0 270 0 0 0 chr11 147415393 147415423 -3368130 + (A)n Simple_repeat Simple_repeat 1 30 0 284 247 227 32 chr11 147415864 147416111 -3367442 - L2 LINE L2 -99 3214 2920 210 313 87 0 chr11 147416316 147416431 -3367122 - L3 LINE CR1 -6 1571 1447 184 253 21 95 chr11 147416446 147416541 -3367012 - L3 LINE CR1 -277 1300 1213 369 255 223 25 chr11 147417787 147417944 -3365609 - MIR SINE MIR -24 238 51 783 300 200 10 chr11 147417972 147418362 -3365191 - L2 LINE L2 -2 3311 2848 352 318 48 42 chr11 147418825 147419136 -3364417 + MLT1I LTR MaLR 94 406 -3 526 296 78 41 chr11 147419240 147419483 -3364070 + MIR SINE MIR 1 252 -10 2021 154 0 0 chr11 147419593 147419892 -3363661 + AluSx SINE Alu 1 299 -13 328 217 122 9 chr11 147420567 147420682 -3362871 - MIR SINE MIR -10 252 125 346 286 194 34 chr11 147420794 147420969 -3362584 + MIR SINE MIR 36 238 -24 2191 112 13 0 chr11 147421138 147421442 -3362111 - AluSx SINE Alu -4 308 1 359 251 90 54 chr11 147421835 147422002 -3361551 + MER5A DNA MER1_type 16 188 -1 21 0 0 0 chr11 147424368 147424389 -3359164 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 147426914 147426935 -3356618 + (T)n Simple_repeat Simple_repeat 1 21 0 234 241 50 38 chr11 147431013 147431100 -3352453 - MIR SINE MIR -92 116 59 282 333 22 0 chr11 147434248 147434338 -3349215 + MIR SINE MIR 36 127 -81 1686 136 3 94 chr11 147434755 147435064 -3348489 + AluSx SINE Alu 1 281 -31 216 0 0 0 chr11 147435067 147435091 -3348462 + (TA)n Simple_repeat Simple_repeat 2 25 0 1026 244 130 9 chr11 147435946 147436261 -3347292 + MLT1C LTR MaLR 115 467 0 1642 182 10 7 chr11 147436666 147436840 -3346713 - AluJo SINE Alu -15 297 120 396 0 0 0 chr11 147436840 147436884 -3346669 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1642 182 10 7 chr11 147436884 147437005 -3346548 - AluJo SINE Alu -192 120 1 699 264 65 16 chr11 147438305 147438551 -3345002 - MIR SINE MIR 0 262 5 205 122 0 24 chr11 147438885 147438926 -3344627 - MIR3 SINE MIR -6 202 163 789 194 0 54 chr11 147438937 147439123 -3344430 - MER5A DNA MER1_type 0 189 14 186 103 0 0 chr11 147439799 147439828 -3343725 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 318 26 0 0 chr11 147441458 147441497 -3342056 + (TG)n Simple_repeat Simple_repeat 1 39 0 2079 139 0 13 chr11 147441588 147441898 -3341655 + AluJb SINE Alu 1 306 -6 22094 150 34 4 chr11 147442167 147446222 -3337331 - L1 LINE L1 -3380 4185 11 440 307 0 9 chr11 147446428 147446542 -3337011 + MER81 DNA DNA 2 114 0 246 233 68 14 chr11 147446633 147446706 -3336847 + MIR SINE MIR 65 141 -121 333 323 55 37 chr11 147446905 147447233 -3336320 - L1M4 LINE L1 -1488 4658 4325 5629 115 49 1 chr11 147447233 147448541 -3335012 - L1PA11 LINE L1 -1 6173 4809 464 297 72 72 chr11 147448892 147449040 -3334513 - L2 LINE L2 -2 3311 3164 535 226 130 13 chr11 147449040 147449270 -3334283 - MIR SINE MIR -4 258 2 464 297 72 72 chr11 147449270 147449441 -3334112 - L2 LINE L2 -148 3165 2992 836 206 130 111 chr11 147449591 147450023 -3333530 + L1MC4a LINE L1 5736 6175 -1633 520 283 163 16 chr11 147450144 147450603 -3332950 + L1MC4 LINE L1 6461 7068 -974 23 0 0 0 chr11 147451933 147451956 -3331597 + AT_rich Low_complexity Low_complexity 1 23 0 215 378 44 15 chr11 147452655 147452790 -3330763 + L3 LINE CR1 1436 1574 -3 269 286 0 12 chr11 147453296 147453380 -3330173 - L1MC4 LINE L1 -26 8016 7934 344 288 126 31 chr11 147453552 147453934 -3329619 - L1ME3A LINE L1 -223 5947 5530 406 236 53 26 chr11 147453986 147454225 -3329328 - L1P2 LINE L1 -703 5452 5197 782 253 90 35 chr11 147454507 147454942 -3328611 - L1ME3A LINE L1 -1365 4781 4323 716 280 70 21 chr11 147454942 147455078 -3328475 + MIR SINE MIR 8 163 -99 2177 102 23 3 chr11 147455078 147455382 -3328171 + AluSg SINE Alu 1 310 0 716 280 70 21 chr11 147455382 147455488 -3328065 + MIR SINE MIR 163 262 0 402 285 190 11 chr11 147455488 147455867 -3327686 - L1ME3A LINE L1 -1825 4321 3875 23 0 0 0 chr11 147455925 147455948 -3327605 + AT_rich Low_complexity Low_complexity 1 23 0 360 78 0 0 chr11 147455948 147455999 -3327554 - L1PA7 LINE L1 -3 6151 6101 275 131 98 16 chr11 147457232 147457293 -3326260 - MIR SINE MIR -15 247 182 317 350 28 21 chr11 147457781 147457924 -3325629 + MIR3 SINE MIR 20 163 -45 25 0 0 0 chr11 147458197 147458222 -3325331 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr11 147459622 147459654 -3323899 + AT_rich Low_complexity Low_complexity 1 32 0 258 336 98 47 chr11 147459729 147459943 -3323610 + L3b LINE CR1 1267 1491 -92 371 329 59 29 chr11 147460351 147460521 -3323032 + MIR SINE MIR 17 191 -71 648 209 124 6 chr11 147462996 147463173 -3320380 - MIR SINE MIR -21 241 44 285 245 20 39 chr11 147463519 147463621 -3319932 + GA-rich Low_complexity Low_complexity 2 101 0 280 217 33 40 chr11 147463709 147463861 -3319692 + (TTATA)n Simple_repeat Simple_repeat 5 155 0 675 206 53 11 chr11 147464013 147464202 -3319351 + L1MD3 LINE L1 7788 7984 -11 1966 128 7 26 chr11 147464418 147464722 -3318831 + AluSg SINE Alu 1 298 -12 2387 84 0 0 chr11 147464722 147465021 -3318532 + AluY SINE Alu 1 299 -12 1233 262 89 48 chr11 147465053 147465837 -3317716 + L2 LINE L2 2503 3313 0 386 325 41 12 chr11 147466675 147466844 -3316709 - L2 LINE L2 -218 3054 2881 21 36 0 0 chr11 147466945 147466973 -3316580 + AT_rich Low_complexity Low_complexity 1 28 0 2637 33 3 0 chr11 147467426 147467731 -3315822 + AluY SINE Alu 1 306 -5 591 134 9 18 chr11 147468363 147468475 -3315078 + HY1 scRNA scRNA 1 111 -1 2273 150 72 5 chr11 147468644 147469045 -3314508 + MSTA LTR MaLR 1 428 0 238 281 116 33 chr11 147469245 147469366 -3314187 - MIR SINE MIR -62 146 16 2185 179 110 75 chr11 147469543 147470251 -3313302 + LTR1B LTR ERV1 1 733 -93 23 0 0 0 chr11 147470295 147470318 -3313235 + AT_rich Low_complexity Low_complexity 1 23 0 228 298 50 33 chr11 147470435 147470556 -3312997 - L1MC/D LINE L1 -1909 5899 5777 447 131 31 9 chr11 147470644 147470752 -3312801 + L1M LINE L1 5295 5404 -774 986 300 80 39 chr11 147470753 147471404 -3312149 - L1ME3A LINE L1 -86 6018 5340 1391 265 83 17 chr11 147471407 147472007 -3311546 - L1ME3A LINE L1 -887 5193 4554 229 233 33 44 chr11 147472199 147472289 -3311264 - L1ME3A LINE L1 -5937 133 45 230 324 14 0 chr11 147472346 147472420 -3311133 + CT-rich Low_complexity Low_complexity 5 79 0 298 245 60 52 chr11 147472424 147472673 -3310880 + L1MCa LINE L1 956 1206 -5220 461 104 26 0 chr11 147472673 147472750 -3310803 + Alu SINE Alu 232 310 -2 388 266 174 34 chr11 147472751 147472958 -3310595 + L1MCa LINE L1 1176 1411 -5015 203 0 37 0 chr11 147473073 147473100 -3310453 + (TC)n Simple_repeat Simple_repeat 2 29 0 2104 113 20 0 chr11 147473470 147473763 -3309790 + AluSx SINE Alu 1 299 -13 2587 67 0 3 chr11 147474001 147474315 -3309238 + AluSp SINE Alu 1 313 0 234 91 0 0 chr11 147474506 147474539 -3309014 + (A)n Simple_repeat Simple_repeat 1 33 0 4836 194 65 44 chr11 147474751 147475341 -3308212 + L1MB8 LINE L1 3883 4459 -1719 1564 193 16 10 chr11 147475341 147475647 -3307906 + AluJo SINE Alu 3 310 -2 4836 194 65 44 chr11 147475647 147475947 -3307606 + L1MB8 LINE L1 4459 4751 -1427 2289 108 0 0 chr11 147475947 147476244 -3307309 + AluSg SINE Alu 3 299 -11 4836 194 65 44 chr11 147476244 147476768 -3306785 + L1MB8 LINE L1 4751 5262 -916 1564 186 0 4 chr11 147476768 147477042 -3306511 + AluJo SINE Alu 40 312 0 4836 194 65 44 chr11 147477042 147477847 -3305706 + L1MB8 LINE L1 5262 6169 -9 22 0 0 0 chr11 147479448 147479470 -3304083 + AT_rich Low_complexity Low_complexity 1 22 0 1210 176 0 5 chr11 147480271 147480476 -3303077 - AluJb SINE Alu -10 302 99 2223 112 0 10 chr11 147481495 147481807 -3301746 - AluSp SINE Alu 0 313 5 629 241 89 6 chr11 147482216 147482374 -3301179 + MIR SINE MIR 45 215 -47 894 62 86 0 chr11 147482489 147482617 -3300936 + MER85 DNA T2_type 1 139 0 427 269 30 22 chr11 147482824 147482958 -3300595 + MIR SINE MIR 46 180 -82 1670 203 72 5 chr11 147484142 147484517 -3299036 + MER63B DNA MER1_type 4 403 -33 2442 56 0 20 chr11 147484953 147485257 -3298296 + AluY SINE Alu 1 298 -13 356 317 149 9 chr11 147486307 147486528 -3297025 - L2 LINE L2 -1020 2294 2043 187 328 116 37 chr11 147487072 147487340 -3296213 - L2 LINE L2 -427 2887 2599 1681 235 90 25 chr11 147487497 147488017 -3295536 - L1ME1 LINE L1 -10 6156 5603 498 202 135 47 chr11 147488017 147488210 -3295343 - MER6B DNA MER2_type 0 210 1 1007 194 130 32 chr11 147488212 147488487 -3295066 - L1ME1 LINE L1 -564 5602 5275 746 205 0 0 chr11 147488487 147488614 -3294939 - FLAM_A SINE Alu -4 129 3 1007 194 130 32 chr11 147488614 147488745 -3294808 - L1ME1 LINE L1 -891 5275 5158 6917 51 11 1 chr11 147488766 147489624 -3293929 - L1PA7 LINE L1 -11 6143 5278 656 198 70 16 chr11 147489598 147489785 -3293768 - L1ME1 LINE L1 -948 5198 5002 * 2528 78 0 0 chr11 147489786 147490095 -3293458 + AluSc SINE Alu 1 309 0 53 30 0 0 chr11 147490286 147490353 -3293200 + GC_rich Low_complexity Low_complexity 1 67 0 225 0 0 0 chr11 147490366 147490391 -3293162 + (A)n Simple_repeat Simple_repeat 1 25 0 2132 218 75 32 chr11 147490392 147491075 -3292478 - L1M4 LINE L1 -1054 5092 4381 611 189 66 78 chr11 147491139 147491382 -3292171 + MER20B DNA MER1_type 544 783 0 599 39 0 0 chr11 147491424 147491501 -3292052 + L1PA5 LINE L1 6078 6154 0 199 332 48 59 chr11 147491716 147491903 -3291650 + MIR3 SINE MIR 16 200 -8 481 255 133 5 chr11 147491965 147492161 -3291392 + MIR SINE MIR 39 259 -3 341 255 43 21 chr11 147492783 147492877 -3290676 - MER5A DNA MER1_type 0 189 94 265 311 113 9 chr11 147493441 147493547 -3290006 + MER5A DNA MER1_type 73 189 0 3725 166 42 10 chr11 147493654 147494373 -3289180 + L1MC2 LINE L1 5454 6195 -149 378 213 81 37 chr11 147494558 147494694 -3288859 + L1MC2 LINE L1 6194 6335 -9 1278 212 0 0 chr11 147494726 147494957 -3288596 - AluJb SINE Alu -81 231 1 1812 159 47 52 chr11 147495873 147495956 -3287597 + MLT1B LTR MaLR 1 83 -307 933 204 83 43 chr11 147495956 147496186 -3287367 + MER8 DNA MER2_type 1 239 0 1812 159 47 52 chr11 147496186 147496485 -3287068 + MLT1B LTR MaLR 83 381 -9 306 0 0 0 chr11 147496598 147496632 -3286921 + (CA)n Simple_repeat Simple_repeat 2 35 0 313 316 102 15 chr11 147497589 147497785 -3285768 + MIR SINE MIR 34 246 -16 2322 113 0 0 chr11 147497906 147498208 -3285345 - AluSg SINE Alu -8 302 1 326 348 43 0 chr11 147498634 147498747 -3284806 - MIR3 SINE MIR -9 199 77 368 86 0 17 chr11 147498747 147498805 -3284748 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 326 348 43 0 chr11 147498805 147498832 -3284721 - MIR3 SINE MIR -131 77 53 678 232 96 56 chr11 147499178 147499428 -3284125 - MIR SINE MIR -2 260 1 38 68 0 0 chr11 147499428 147499501 -3284052 + AT_rich Low_complexity Low_complexity 1 73 0 1078 141 33 5 chr11 147499732 147499916 -3283637 - Tigger7 DNA MER2_type -1 2486 2298 * 1866 154 46 3 chr11 147499912 147500217 -3283336 - Tigger7 DNA MER2_type -415 318 1 351 154 77 0 chr11 147501162 147501227 -3282326 - MIR SINE MIR -11 251 182 27 62 0 0 chr11 147501376 147501424 -3282129 + AT_rich Low_complexity Low_complexity 1 48 0 185 303 0 61 chr11 147502039 147502105 -3281448 - L2 LINE L2 -213 3059 2998 260 344 70 0 chr11 147502516 147502673 -3280880 - MIR SINE MIR 0 262 95 360 293 77 85 chr11 147504049 147504411 -3279142 - L1MEd LINE L1 -1152 1338 893 228 232 18 0 chr11 147504416 147504472 -3279081 - HAL1 LINE L1 -1493 1014 958 227 167 0 0 chr11 147506368 147506404 -3277149 - U2 snRNA snRNA -152 36 1 456 251 108 36 chr11 147506858 147507112 -3276441 - L1ME LINE L1 -593 5577 5311 296 227 68 11 chr11 147507667 147507755 -3275798 + MIR SINE MIR 170 262 0 475 248 93 31 chr11 147508515 147508676 -3274877 + MIR SINE MIR 92 262 0 414 243 10 0 chr11 147508991 147509094 -3274459 + L1MD3 LINE L1 7882 7985 -10 231 283 91 10 chr11 147509213 147509312 -3274241 - L1ME LINE L1 -668 5453 5347 4207 161 40 16 chr11 147509590 147510485 -3273068 + L1MA7 LINE L1 5138 6056 -235 22 0 0 0 chr11 147510587 147510609 -3272944 + AT_rich Low_complexity Low_complexity 1 22 0 9512 187 80 50 chr11 147510789 147512869 -3270684 + L1MC1 LINE L1 20 2037 -4389 2249 98 3 0 chr11 147512869 147513165 -3270388 - AluY SINE Alu -14 297 1 9512 187 80 50 chr11 147513165 147513249 -3270304 + L1MC1 LINE L1 2037 2117 -4309 927 124 43 32 chr11 147513249 147513435 -3270118 + L1MA9 LINE L1 6125 6312 0 9512 187 80 50 chr11 147513435 147514189 -3269364 + L1MC1 LINE L1 2117 3039 -3387 3934 133 18 3 chr11 147514189 147514813 -3268740 + MER41B LTR ERV1 1 633 -2 9512 187 80 50 chr11 147514813 147515105 -3268448 + L1MC1 LINE L1 3039 3321 -3105 17818 149 41 12 chr11 147515107 147516877 -3266676 + L1PB1 LINE L1 1 1717 -5150 2196 111 0 0 chr11 147516877 147517166 -3266387 - AluSx SINE Alu -23 289 1 17818 149 41 12 chr11 147517166 147521256 -3262297 + L1PB1 LINE L1 1717 6082 -785 288 0 0 0 chr11 147521256 147521288 -3262265 + (CAA)n Simple_repeat Simple_repeat 2 33 0 17818 149 41 12 chr11 147521288 147522097 -3261456 + L1PB1 LINE L1 6082 6866 -1 7597 194 33 29 chr11 147522090 147523393 -3260160 + L1MC1 LINE L1 3307 4604 -2009 * 1564 191 17 23 chr11 147523393 147523692 -3259861 - AluJo SINE Alu -9 303 7 7597 194 33 29 chr11 147523692 147524094 -3259459 + L1MC1 LINE L1 4604 5003 -1610 2017 89 37 4 chr11 147524094 147524412 -3259141 + AluY SINE Alu 1 327 0 7597 194 33 29 chr11 147524412 147524914 -3258639 + L1MC1 LINE L1 5003 5502 -1111 2615 37 0 0 chr11 147524914 147525210 -3258343 + AluY SINE Alu 1 296 -15 7597 194 33 29 chr11 147525210 147526280 -3257273 + L1MC1 LINE L1 5502 6600 -13 2108 108 4 0 chr11 147526671 147526948 -3256605 + AluSg SINE Alu 1 278 -32 189 0 0 0 chr11 147526948 147526969 -3256584 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1383 150 185 0 chr11 147527133 147527387 -3256166 + AluJb SINE Alu 2 302 0 568 343 110 25 chr11 147527539 147528220 -3255333 - L2 LINE L2 0 3272 2534 327 362 50 20 chr11 147528354 147528553 -3255000 + MIR SINE MIR 51 255 -7 24 0 0 0 chr11 147529211 147529235 -3254318 + AT_rich Low_complexity Low_complexity 1 24 0 423 332 70 16 chr11 147530080 147530267 -3253286 + MIR3 SINE MIR 6 202 -6 1909 91 42 0 chr11 147532456 147532743 -3250810 + L1MA2 LINE L1 6002 6300 -4 704 272 5 37 chr11 147532805 147532996 -3250557 + Charlie8 DNA MER1_type 73 257 -2160 271 252 153 23 chr11 147533206 147533337 -3250216 + MIR SINE MIR 104 251 -11 345 328 62 13 chr11 147534369 147534677 -3248876 + L1MCc LINE L1 1187 1509 -4914 10985 155 30 92 chr11 147534678 147535558 -3247995 + L1M4c LINE L1 16 949 -5433 664 153 36 0 chr11 147535558 147535669 -3247884 + FLAM_C SINE Alu 8 122 -21 10985 155 30 92 chr11 147535669 147536775 -3246778 + L1M4c LINE L1 949 2123 -4259 2192 75 0 4 chr11 147536775 147537053 -3246500 - AluY SINE Alu 0 311 35 10985 155 30 92 chr11 147537053 147537571 -3245982 + L1M4c LINE L1 2123 2446 -3936 1534 184 74 9 chr11 147537571 147537897 -3245656 + MER7A DNA MER2_type 1 345 -1 10985 155 30 92 chr11 147537897 147538113 -3245440 + L1M4c LINE L1 2446 2674 -3708 10659 197 72 22 chr11 147538132 147541562 -3241991 + L1MB3 LINE L1 1 6598 -236 1051 291 58 18 chr11 147541647 147542357 -3241196 + L1MCc LINE L1 1807 2544 -4578 419 320 56 21 chr11 147542357 147542632 -3240921 + L1MDa LINE L1 1824 2161 -740 212 250 0 0 chr11 147543016 147543064 -3240489 + A-rich Low_complexity Low_complexity 2 49 0 3498 239 70 36 chr11 147543080 147544373 -3239180 + L1M4 LINE L1 6 1254 -5390 4188 145 1 10 chr11 147544373 147545064 -3238489 + L1PA16 LINE L1 5480 6164 -2 3498 239 70 36 chr11 147545064 147545953 -3237600 + L1M4 LINE L1 1254 2112 -4532 2318 98 3 0 chr11 147545953 147546258 -3237295 + AluSp SINE Alu 1 306 -7 3498 239 70 36 chr11 147546258 147546935 -3236618 + L1M4 LINE L1 2112 3071 -3573 647 224 105 0 chr11 147546938 147547157 -3236396 - L1M4 LINE L1 -751 5395 5154 * 9635 167 37 24 chr11 147547147 147550110 -3233443 - L1MA4A LINE L1 -4 7001 4005 1567 154 4 32 chr11 147550111 147550390 -3233163 - AluSx SINE Alu -2 310 40 1702 105 26 0 chr11 147550390 147550617 -3232936 + AluSx SINE Alu 62 296 -16 1513 147 43 18 chr11 147550638 147550917 -3232636 - L1MA4A LINE L1 -4463 2386 2101 6667 137 45 28 chr11 147550917 147552081 -3231472 - Tigger2 DNA MER2_type -1534 1184 1 207 218 18 36 chr11 147552499 147552554 -3230999 + L2 LINE L2 2715 2768 -546 298 73 0 0 chr11 147552563 147552604 -3230949 + L1PA10 LINE L1 5911 5951 -217 367 188 0 0 chr11 147554540 147554604 -3228949 + LTR40b LTR ERVL 398 461 -1 414 259 15 46 chr11 147555258 147555389 -3228164 - MIR SINE MIR -52 210 84 321 327 216 10 chr11 147555549 147555748 -3227805 + MIR SINE MIR 23 262 0 328 326 30 56 chr11 147556838 147557105 -3226448 + L1M4 LINE L1 3839 4098 -2546 2032 268 149 10 chr11 147557896 147558804 -3224749 - L2 LINE L2 -2 3311 2256 312 333 8 23 chr11 147559714 147559846 -3223707 - LTR33 LTR ERVL -363 158 29 21 0 0 0 chr11 147560317 147560338 -3223215 + AT_rich Low_complexity Low_complexity 1 21 0 304 370 48 14 chr11 147560350 147560496 -3223057 - MIR3 SINE MIR -42 166 16 301 235 76 23 chr11 147561361 147561493 -3222060 + L1M4 LINE L1 5127 5265 -1379 2017 154 42 8 chr11 147562411 147562766 -3220787 - MER46B DNA MER2_type 0 231 1 1092 193 38 124 chr11 147564116 147564536 -3219017 + Looper DNA T2_type 2 385 -1173 642 244 104 12 chr11 147564537 147564701 -3218852 - MER58A DNA MER1_type -1 223 45 2145 205 79 23 chr11 147564732 147565288 -3218265 + Looper DNA T2_type 379 965 -593 620 164 132 13 chr11 147565282 147565434 -3218119 + Looper DNA T2_type 1385 1554 -4 * 268 323 11 0 chr11 147565782 147565875 -3217678 + L2 LINE L2 3179 3272 0 222 37 0 0 chr11 147566943 147566970 -3216583 + (CCCCCT)n Simple_repeat Simple_repeat 3 29 0 4981 85 22 20 chr11 147566970 147568038 -3215515 + SVA Other Other 60 1004 -382 341 330 4 27 chr11 147568056 147568211 -3215342 - L1M3 LINE L1 -527 5594 5453 576 259 65 58 chr11 147568420 147568714 -3214839 + L1ME3 LINE L1 4704 4999 -1147 1370 261 142 45 chr11 147568851 147569678 -3213875 + L1ME3 LINE L1 5255 6161 -1 241 271 12 12 chr11 147569787 147569872 -3213681 + L1MC4a LINE L1 3593 3677 -2469 904 144 144 0 chr11 147569941 147570108 -3213445 - MSTA LTR MaLR -237 191 1 1122 53 13 7 chr11 147570302 147570452 -3213101 - L1PA10 LINE L1 -3 6165 6015 1588 186 30 3 chr11 147570565 147570861 -3212692 + AluJo SINE Alu 1 304 -8 626 277 59 43 chr11 147570890 147571313 -3212240 + L1ME3 LINE L1 467 896 -5174 910 160 111 24 chr11 147571314 147571534 -3212019 - MSTA LTR MaLR -14 414 197 1728 263 68 34 chr11 147571534 147572436 -3211117 + L1ME3 LINE L1 931 1862 -4218 501 249 100 46 chr11 147572506 147572787 -3210766 + L1ME3 LINE L1 3809 4104 -1976 1983 267 74 46 chr11 147572799 147573016 -3210537 + L1ME3 LINE L1 4170 4379 -1721 1806 164 39 22 chr11 147573016 147573375 -3210178 + MLT1A1 LTR MaLR 1 365 0 1983 267 74 46 chr11 147573375 147573854 -3209699 + L1ME3 LINE L1 4379 4843 -1257 2487 66 0 0 chr11 147573854 147574159 -3209394 + AluY SINE Alu 1 305 -6 1983 267 74 46 chr11 147574159 147574643 -3208910 + L1ME3 LINE L1 4843 5386 -714 501 280 16 16 chr11 147574687 147574873 -3208680 + L1ME3 LINE L1 5904 6089 -7 495 283 72 18 chr11 147574898 147575177 -3208376 + L1MC4a LINE L1 3663 3956 -2190 988 236 67 41 chr11 147575285 147575674 -3207879 + L1MC4a LINE L1 5655 6053 -1755 207 0 0 0 chr11 147575740 147575763 -3207790 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1109 336 84 30 chr11 147576156 147576823 -3206730 + L3 LINE CR1 420 1122 -455 194 279 269 0 chr11 147577209 147577313 -3206240 - MIR3 SINE MIR -22 186 55 2358 85 35 41 chr11 147577830 147578196 -3205357 + THE1B LTR MaLR 1 364 0 1932 206 119 43 chr11 147578255 147578834 -3204719 + MLT1E3 LTR MaLR 1 623 -1 2665 66 0 3 chr11 147579653 147580000 -3203553 + L1PA6 LINE L1 5809 6154 0 268 100 100 0 chr11 147580006 147580056 -3203497 + L1MB2 LINE L1 6115 6169 -2 222 250 0 36 chr11 147580196 147580252 -3203301 + GA-rich Low_complexity Low_complexity 3 56 0 605 241 21 78 chr11 147580518 147580709 -3202844 - LTR33A LTR ERVL -319 204 25 477 0 0 0 chr11 147581437 147581490 -3202063 + (TA)n Simple_repeat Simple_repeat 2 54 0 2948 199 68 27 chr11 147581690 147582393 -3201160 + MER44D DNA MER2_type 2 605 0 26 50 0 0 chr11 147583707 147583747 -3199806 + AT_rich Low_complexity Low_complexity 1 40 0 198 0 0 0 chr11 147583790 147583812 -3199741 + (TA)n Simple_repeat Simple_repeat 1 22 0 1786 191 6 30 chr11 147584012 147584347 -3199206 + Tigger7 DNA MER2_type 2 328 -2159 974 244 49 10 chr11 147585231 147585436 -3198117 + Tigger7 DNA MER2_type 24 236 -469 248 114 0 0 chr11 147585432 147585467 -3198086 + Tigger7 DNA MER2_type 2498 2532 -55 * 795 205 113 64 chr11 147586521 147586848 -3196705 + LTR37A LTR ERV1 84 426 0 14238 178 30 23 chr11 147587071 147593872 -3189681 + L1PB2 LINE L1 6 6862 -5 3578 215 43 14 chr11 147593921 147594764 -3188789 + Cheshire DNA MER1_type 32 898 -1522 29811 109 16 72 chr11 147594772 147601295 -3182258 + L1PA7 LINE L1 12 6151 -3 1774 163 19 3 chr11 147601331 147601651 -3181902 + Cheshire DNA MER1_type 882 1206 -1214 3268 184 41 13 chr11 147601659 147602370 -3181183 + Cheshire DNA MER1_type 1525 2255 -165 1188 299 91 32 chr11 147602370 147603095 -3180458 + L2 LINE L2 2322 3083 -230 291 289 0 0 chr11 147603124 147603200 -3180353 + L2 LINE L2 3237 3312 -1 183 80 0 0 chr11 147603258 147603283 -3180270 + (TA)n Simple_repeat Simple_repeat 1 25 0 427 382 56 37 chr11 147603809 147604270 -3179283 + L1ME LINE L1 865 1334 -5597 226 284 57 14 chr11 147604537 147604678 -3178875 + L1ME LINE L1 1298 1444 -4979 557 306 63 15 chr11 147604691 147604959 -3178594 + L1ME3 LINE L1 25 305 -6118 566 285 71 57 chr11 147604970 147605790 -3177763 + L1ME3 LINE L1 1679 2509 -4613 328 284 23 35 chr11 147605939 147606196 -3177357 + L1ME3 LINE L1 2724 2977 -4145 2914 204 25 20 chr11 147606216 147606869 -3176684 + L1MB7 LINE L1 5500 6155 -29 3009 253 77 46 chr11 147606881 147606952 -3176601 + L1ME3 LINE L1 2943 3010 -3931 1520 223 0 3 chr11 147606952 147607244 -3176309 + AluJb SINE Alu 2 292 -20 3009 253 77 46 chr11 147607244 147608338 -3175215 + L1ME3 LINE L1 3010 4179 -2762 2470 69 0 3 chr11 147608338 147608642 -3174911 + AluY SINE Alu 1 303 -8 3009 253 77 46 chr11 147608642 147609169 -3174384 + L1ME3 LINE L1 4179 4688 -2253 9872 120 4 1 chr11 147609179 147611437 -3172116 - L1PA8A LINE L1 -2 6129 3870 7115 142 34 22 chr11 147611440 147612020 -3171533 + L1P LINE L1 2648 3220 -2926 243 0 0 0 chr11 147612020 147612047 -3171506 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7115 142 34 22 chr11 147612047 147612921 -3170632 + L1P LINE L1 3220 4192 -1954 * 42561 36 21 2 chr11 147612918 147618949 -3164604 + L1PA3 LINE L1 5 6154 -1 281 221 130 39 chr11 147618946 147619100 -3164453 + L1ME3 LINE L1 4970 5137 -1804 * 1243 204 108 3 chr11 147619158 147619492 -3164061 + L1ME3 LINE L1 6581 6949 -8 23 0 0 0 chr11 147619533 147619556 -3163997 + AT_rich Low_complexity Low_complexity 1 23 0 434 220 34 0 chr11 147619856 147619974 -3163579 + LTR37B LTR ERV1 347 468 0 343 242 0 74 chr11 147620498 147620647 -3162906 + MER31-int LTR ERV1 1164 1301 -3635 734 244 62 35 chr11 147621021 147621279 -3162274 - L1MC4a LINE L1 -1904 5904 5640 24 0 0 0 chr11 147621287 147621311 -3162242 + AT_rich Low_complexity Low_complexity 1 24 0 257 186 43 14 chr11 147621311 147621381 -3162172 - L1MC4a LINE L1 -2482 5326 5255 1819 169 0 13 chr11 147621639 147621940 -3161613 - AluJo SINE Alu -15 297 1 347 250 61 27 chr11 147621950 147622098 -3161455 - L1 LINE L1 -1112 5034 4882 438 320 115 48 chr11 147622143 147622607 -3160946 - L1 LINE L1 -1309 4837 4342 331 310 54 81 chr11 147623498 147623833 -3159720 + HAL1 LINE L1 1178 1503 -1004 5207 37 2 0 chr11 147623984 147624607 -3158946 + L1PA4 LINE L1 5532 6155 0 29 47 0 0 chr11 147625010 147625053 -3158500 + AT_rich Low_complexity Low_complexity 1 43 0 7357 93 7 23 chr11 147625537 147626692 -3156861 + L1MA2 LINE L1 5160 6304 0 24 0 0 0 chr11 147626692 147626716 -3156837 + AT_rich Low_complexity Low_complexity 1 24 0 2275 115 0 13 chr11 147626935 147627248 -3156305 - AluSx SINE Alu -3 309 1 268 319 77 66 chr11 147628239 147628421 -3155132 + MIR SINE MIR 48 231 -31 22 35 0 0 chr11 147629949 147629978 -3153575 + AT_rich Low_complexity Low_complexity 1 29 0 240 35 0 0 chr11 147630659 147630688 -3152865 + (CA)n Simple_repeat Simple_repeat 1 29 0 1714 187 3 10 chr11 147632178 147632478 -3151075 + AluJo SINE Alu 1 298 -14 569 24 123 0 chr11 147632513 147632766 -3150787 + (TA)n Simple_repeat Simple_repeat 1 283 0 743 302 83 50 chr11 147632884 147633523 -3150030 + L1MC4a LINE L1 5255 5914 -1894 836 63 0 27 chr11 147633663 147633774 -3149779 + AluSp/q SINE Alu 197 304 -9 1971 121 7 40 chr11 147633959 147634279 -3149274 - AluSx SINE Alu 0 310 1 1167 81 7 0 chr11 147634495 147634644 -3148909 - AluSq SINE Alu -118 195 46 593 103 0 0 chr11 147634645 147634732 -3148821 + AluSp/q SINE Alu 215 301 -12 360 287 88 44 chr11 147635224 147635241 -3148312 - MIR SINE MIR 0 262 247 1784 161 17 32 chr11 147635241 147635589 -3147964 - MER2 DNA MER2_type -1 343 1 360 287 88 44 chr11 147635589 147635752 -3147801 - MIR SINE MIR -15 247 74 1972 142 3 0 chr11 147635775 147636071 -3147482 + AluSx SINE Alu 1 297 -15 218 217 159 14 chr11 147636423 147636492 -3147061 + L2 LINE L2 3186 3264 -8 24 0 0 0 chr11 147636532 147636556 -3146997 + AT_rich Low_complexity Low_complexity 1 24 0 363 330 80 45 chr11 147637290 147637361 -3146192 + MIR SINE MIR 30 97 -165 2234 132 11 30 chr11 147637361 147637732 -3145821 + THE1B LTR MaLR 1 364 0 11738 86 11 1 chr11 147637732 147639296 -3144257 + THE1B-int LTR MaLR 1 1580 0 2106 141 33 30 chr11 147639296 147639659 -3143894 + THE1B LTR MaLR 1 364 0 363 330 80 45 chr11 147639659 147639809 -3143744 + MIR SINE MIR 96 261 -1 22 0 0 0 chr11 147639920 147639942 -3143611 + AT_rich Low_complexity Low_complexity 1 22 0 1756 174 0 7 chr11 147640698 147640980 -3142573 + AluJo SINE Alu 1 280 -32 225 0 0 0 chr11 147640980 147641005 -3142548 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 411 202 0 0 chr11 147641010 147641104 -3142449 + (TA)n Simple_repeat Simple_repeat 1 94 0 188 35 35 0 chr11 147641892 147641921 -3141632 + (GAAAA)n Simple_repeat Simple_repeat 1 30 0 568 100 38 0 chr11 147641965 147642045 -3141508 + U6 snRNA snRNA 1 83 -24 1425 155 44 71 chr11 147642608 147642904 -3140649 + AluJo SINE Alu 1 288 -24 296 185 25 8 chr11 147642908 147643027 -3140526 + (TA)n Simple_repeat Simple_repeat 2 122 0 28 0 0 0 chr11 147643032 147643060 -3140493 + AT_rich Low_complexity Low_complexity 1 28 0 387 286 116 0 chr11 147644487 147644634 -3138919 + MIR SINE MIR 28 191 -71 982 220 87 66 chr11 147644898 147645228 -3138325 - L1MC5 LINE L1 -36 7925 7577 1610 197 0 3 chr11 147645228 147645512 -3138041 - AluJo SINE Alu -29 283 1 982 220 87 66 chr11 147645512 147645745 -3137808 - L1MC5 LINE L1 -384 7577 7350 6860 56 38 24 chr11 147645754 147646699 -3136854 - L1PA7 LINE L1 0 6154 5191 456 88 0 0 chr11 147647657 147647725 -3135828 - AluSp/q SINE Alu -5 308 241 239 247 21 21 chr11 147648391 147648488 -3135065 + A-rich Low_complexity Low_complexity 4 100 0 285 197 167 106 chr11 147649349 147649481 -3134072 - MIR SINE MIR -56 206 67 190 284 274 0 chr11 147649628 147649723 -3133830 - MIR SINE MIR -136 126 6 212 318 78 23 chr11 147650610 147650739 -3132814 + MER5A DNA MER1_type 27 162 -27 1925 167 3 3 chr11 147650872 147651178 -3132375 + AluJb SINE Alu 1 306 -6 436 153 24 0 chr11 147651764 147651849 -3131704 + L1MA2 LINE L1 6209 6295 -9 21 36 0 0 chr11 147652581 147652609 -3130944 + AT_rich Low_complexity Low_complexity 1 28 0 34 0 0 0 chr11 147652886 147652920 -3130633 + AT_rich Low_complexity Low_complexity 1 34 0 2113 194 7 7 chr11 147652991 147653418 -3130135 + L1MC3 LINE L1 7344 7770 -15 389 293 56 56 chr11 147653420 147653652 -3129901 - MLT1K LTR MaLR -15 573 342 2489 70 0 0 chr11 147703863 147704164 -3079389 - AluY SINE Alu -10 301 1 299 276 8 73 chr11 147704199 147704253 -3079300 - L3 LINE CR1 -160 1417 1361 3508 131 54 8 chr11 147704253 147704757 -3078796 - MER1A DNA MER1_type 0 527 1 299 276 8 73 chr11 147704757 147704825 -3078728 - L3 LINE CR1 -216 1361 1303 181 253 67 27 chr11 147705013 147705088 -3078465 - L3 LINE CR1 -338 1239 1162 1472 199 13 3 chr11 147705101 147705402 -3078151 - L1MA7 LINE L1 -6 6285 5982 2019 105 60 84 chr11 147705500 147705881 -3077672 - THE1C LTR MaLR 0 375 4 21 0 0 0 chr11 147706427 147706448 -3077105 + AT_rich Low_complexity Low_complexity 1 21 0 11313 94 10 1 chr11 147708402 147709917 -3073636 - L1P3 LINE L1 -4926 1535 8 307 225 219 45 chr11 147709928 147710106 -3073447 - L1MC5 LINE L1 -645 7316 7108 28108 108 4 1 chr11 147710206 147714275 -3069278 - L1P LINE L1 -848 5298 1217 311 255 12 87 chr11 147714382 147714599 -3068954 + MLT1H LTR MaLR 196 515 -34 1163 261 128 26 chr11 147714673 147715164 -3068389 + MLT1H1 LTR MaLR 15 555 0 1871 321 86 18 chr11 147715164 147716243 -3067310 - MERVL LTR ERVL -1980 3505 2353 2189 126 0 3 chr11 147716319 147716629 -3066924 + AluSc SINE Alu 1 309 0 3580 224 68 26 chr11 147717602 147718538 -3065015 + L1MC4 LINE L1 6491 7466 -576 295 173 39 0 chr11 147718735 147718787 -3064766 - Ricksha DNA DNA -2341 905 852 723 277 0 5 chr11 147718788 147718972 -3064581 - MLT2B2 LTR ERVL -20 495 313 1186 241 50 66 chr11 147719112 147719302 -3064251 + L1MC5 LINE L1 6990 7181 -780 2017 133 0 13 chr11 147719302 147719610 -3063943 + AluJb SINE Alu 5 308 -4 1186 241 50 66 chr11 147719610 147719876 -3063677 + L1MC5 LINE L1 7181 7439 -522 323 222 32 0 chr11 147719877 147719940 -3063613 - MERVL LTR ERVL -3533 2231 2167 1606 169 29 111 chr11 147719948 147720327 -3063226 - Tigger3(Golem) DNA MER2_type -1 3028 1 1016 365 56 23 chr11 147720329 147721063 -3062490 - MERVL LTR ERVL -3601 2163 1406 342 246 44 0 chr11 147721087 147721104 -3062449 - L1MA10 LINE L1 0 6334 6318 3281 157 33 60 chr11 147721104 147722041 -3061512 - L1MB7 LINE L1 -9 6155 5272 609 111 67 0 chr11 147722142 147722232 -3061321 + FRAM SINE Alu 74 169 -7 1834 145 42 3 chr11 147723234 147723523 -3060030 + AluSx SINE Alu 1 300 -12 300 111 0 0 chr11 147723523 147723568 -3059985 + (GGAA)n Simple_repeat Simple_repeat 1 45 0 498 297 128 14 chr11 147723849 147724209 -3059344 + L1ME2 LINE L1 5529 5929 -235 226 312 39 0 chr11 147724487 147724564 -3058989 + MIR SINE MIR 122 201 -61 275 340 68 0 chr11 147725615 147725718 -3057835 - MIR3 SINE MIR -23 185 76 208 382 0 0 chr11 147725722 147725790 -3057763 - L2 LINE L2 -5 3267 3200 724 291 27 27 chr11 147725810 147726068 -3057485 + MIR SINE MIR 3 260 -2 226 213 0 93 chr11 147726230 147726305 -3057248 + L2 LINE L2 3183 3250 -22 216 0 0 0 chr11 147726309 147726333 -3057220 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 2431 82 0 0 chr11 147726409 147726713 -3056840 + AluY SINE Alu 1 304 -7 614 258 64 81 chr11 147727339 147727637 -3055916 + MLT1J LTR MaLR 215 507 -4 2160 98 17 10 chr11 147728038 147728334 -3055219 + AluSg SINE Alu 1 298 -12 455 230 63 70 chr11 147728338 147728407 -3055146 + L1ME4a LINE L1 5824 5892 -229 1756 127 27 57 chr11 147728407 147728706 -3054847 + AluJo SINE Alu 1 290 -22 455 230 63 70 chr11 147728706 147728923 -3054630 + L1ME4a LINE L1 5892 6108 -13 411 221 105 81 chr11 147729006 147729178 -3054375 - MLT1J2 LTR MaLR -1 449 274 2171 117 3 0 chr11 147729441 147729741 -3053812 - AluSq SINE Alu -12 301 1 299 342 42 0 chr11 147730794 147730914 -3052639 - L2 LINE L2 -10 3303 3179 2094 136 3 0 chr11 147731040 147731350 -3052203 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr11 147731350 147731371 -3052182 + AT_rich Low_complexity Low_complexity 1 21 0 205 237 72 52 chr11 147731467 147731564 -3051989 + MIR SINE MIR 21 119 -89 192 349 0 36 chr11 147732040 147732123 -3051430 - L2 LINE L2 -115 3157 3078 570 218 67 0 chr11 147732691 147732861 -3050692 + MIR SINE MIR 69 252 -10 183 100 0 0 chr11 147732868 147732898 -3050655 + (TTA)n Simple_repeat Simple_repeat 1 30 0 349 225 194 0 chr11 147733409 147733538 -3050015 + MIR3 SINE MIR 39 192 -16 3280 176 116 26 chr11 147734443 147735504 -3048049 + L1MB4 LINE L1 4966 6129 -51 2418 140 23 48 chr11 147736646 147736891 -3046662 - MSTB LTR MaLR 0 426 195 1929 66 70 0 chr11 147736891 147737134 -3046419 - AluY SINE Alu -12 299 40 2418 140 23 48 chr11 147737134 147737325 -3046228 - MSTB LTR MaLR -231 195 1 386 266 11 11 chr11 147737649 147737743 -3045810 - MER96 DNA MER1_type? 0 175 82 269 59 0 0 chr11 147737965 147737999 -3045554 + AluSq SINE Alu 1 34 -268 5851 79 35 30 chr11 147737999 147738821 -3044732 + LTR12 LTR ERV1 1 826 0 2056 90 0 8 chr11 147738821 147739089 -3044464 + AluSq SINE Alu 31 296 -17 232 146 0 0 chr11 147739811 147739852 -3043701 - L2 LINE L2 -8 3305 3265 386 194 0 29 chr11 147741965 147742068 -3041485 + C-rich Low_complexity Low_complexity 6 105 0 193 259 86 74 chr11 147742209 147742290 -3041263 - MIR SINE MIR -61 147 66 2047 128 31 0 chr11 147742511 147742799 -3040754 - AluSx SINE Alu -6 306 10 244 291 41 87 chr11 147743377 147743549 -3040004 - L2 LINE L2 -190 3082 2919 290 259 44 74 chr11 147743876 147744011 -3039542 - MIR3 SINE MIR -35 173 43 2131 179 21 0 chr11 147744011 147744390 -3039163 + MLT1B LTR MaLR 4 390 0 191 133 0 50 chr11 147744776 147744836 -3038717 + (T)n Simple_repeat Simple_repeat 1 57 0 875 208 72 34 chr11 147745531 147745796 -3037757 - ORSL DNA AcHobo 0 275 1 760 164 0 0 chr11 147745846 147745962 -3037591 + FLAM_C SINE Alu 2 117 -26 233 118 20 0 chr11 147745968 147746019 -3037534 + (TA)n Simple_repeat Simple_repeat 2 53 0 1270 228 18 4 chr11 147746031 147746159 -3037394 + AluJb SINE Alu 1 126 -186 201 39 0 0 chr11 147746159 147746185 -3037368 + (TA)n Simple_repeat Simple_repeat 2 27 0 1270 228 18 4 chr11 147746185 147746328 -3037225 + AluJb SINE Alu 126 276 -36 275 0 29 0 chr11 147746334 147746369 -3037184 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 2158 143 0 0 chr11 147746651 147746958 -3036595 + AluSx SINE Alu 1 307 -5 1115 156 108 3 chr11 147747191 147747533 -3036020 - L1M4 LINE L1 -710 5537 5139 566 54 40 0 chr11 147747533 147747607 -3035946 + MSTD LTR MaLR 1 77 -319 754 201 11 14 chr11 147747634 147747816 -3035737 - L1MDa LINE L1 -3806 2409 2231 2972 64 10 1 chr11 147747816 147748483 -3035070 - L1PA8 LINE L1 0 6172 5350 424 210 6 30 chr11 147748463 147748649 -3034904 - L1MDa LINE L1 -3953 2262 2125 * 1579 195 22 38 chr11 147748692 147749012 -3034541 + Tigger7 DNA MER2_type 2 326 -2165 2312 79 33 0 chr11 147749012 147749315 -3034238 + AluSq SINE Alu 1 313 0 1579 195 22 38 chr11 147749315 147749348 -3034205 + Tigger7 DNA MER2_type 326 2490 -1 396 246 115 21 chr11 147749353 147749544 -3034009 - L1MDa LINE L1 -4320 2076 1868 28 48 0 0 chr11 147749734 147749776 -3033777 + AT_rich Low_complexity Low_complexity 1 42 0 401 289 36 53 chr11 147749868 147750074 -3033479 - MER21B LTR ERV1 -52 811 640 1011 133 24 99 chr11 147750087 147750232 -3033321 + MER2 DNA MER2_type 17 171 -174 2095 109 4 0 chr11 147750232 147750506 -3033047 + AluSx SINE Alu 1 275 -37 216 0 0 0 chr11 147750511 147750535 -3033018 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1011 133 24 99 chr11 147750535 147750594 -3032959 + MER2 DNA MER2_type 175 211 -134 195 188 0 0 chr11 147750623 147750671 -3032882 + T-rich Low_complexity Low_complexity 1 48 0 1202 217 20 53 chr11 147750757 147751061 -3032492 - MER21B LTR ERV1 -265 598 305 509 61 0 0 chr11 147751063 147751129 -3032424 - AluSp/q SINE Alu -21 292 227 336 372 50 12 chr11 147751143 147751385 -3032168 + ERVL LTR ERVL 1018 1268 -4496 241 242 48 0 chr11 147751417 147751479 -3032074 - MER5A DNA MER1_type -76 113 49 1314 175 49 12 chr11 147751678 147751960 -3031593 + MER61C LTR ERV1 1 381 -53 24 0 0 0 chr11 147751960 147751984 -3031569 + AT_rich Low_complexity Low_complexity 1 24 0 1283 14 0 0 chr11 147751986 147752130 -3031423 - L1PA3 LINE L1 0 6155 6012 1561 191 12 41 chr11 147752243 147752588 -3030965 - L1M4 LINE L1 -558 5616 5282 23 0 0 53 chr11 147752880 147752901 -3030652 + AT_rich Low_complexity Low_complexity 1 21 -15 2258 83 0 10 chr11 147752901 147753189 -3030364 - AluSc SINE Alu -24 285 1 23 0 0 53 chr11 147753189 147753205 -3030348 + AT_rich Low_complexity Low_complexity 21 36 0 2439 128 49 20 chr11 147753212 147753658 -3029895 - L1MA7 LINE L1 -1 6290 5832 582 236 55 90 chr11 147753682 147754025 -3029528 - L1MEc LINE L1 -4771 1625 1295 783 344 67 5 chr11 147754497 147754884 -3028669 + L2 LINE L2 2039 2449 -865 307 116 58 58 chr11 147754952 147755021 -3028532 - L1MB8 LINE L1 -3 6175 6107 4597 182 25 9 chr11 147755059 147755961 -3027592 - L1MB4 LINE L1 -6 6174 5258 2460 87 0 0 chr11 147756131 147756430 -3027123 - AluSq SINE Alu -14 299 1 735 305 98 35 chr11 147756430 147757050 -3026503 + L2 LINE L2 2616 3268 -4 285 274 81 81 chr11 147758881 147759078 -3024475 + MIR SINE MIR 10 206 -56 25 75 0 0 chr11 147759129 147759182 -3024371 + AT_rich Low_complexity Low_complexity 1 53 0 283 175 0 0 chr11 147759257 147759297 -3024256 + Alu SINE Alu 1 40 -261 1503 112 0 24 chr11 147759400 147759606 -3023947 - AluSg SINE Alu -109 201 1 2978 196 67 42 chr11 147759616 147759959 -3023594 - L1MB4 LINE L1 -874 5272 4939 1757 166 7 39 chr11 147759959 147760266 -3023287 - AluJo SINE Alu -15 297 1 2978 196 67 42 chr11 147760266 147760694 -3022859 - L1MB4 LINE L1 -1207 4939 4481 1131 174 0 0 chr11 147760696 147760874 -3022679 - AluSg/x SINE Alu -2 308 131 1779 153 19 48 chr11 147760933 147761246 -3022307 - AluJb SINE Alu -3 309 6 691 88 71 26 chr11 147761249 147761362 -3022191 - MER61B LTR ERV1 0 425 308 43037 36 25 2 chr11 147761362 147766883 -3016670 + L1P1 LINE L1 31 5686 -469 212 271 0 17 chr11 147769260 147769319 -3014234 + T-rich Low_complexity Low_complexity 2 59 0 185 97 0 32 chr11 147770385 147770416 -3013137 - MIR SINE MIR -142 66 37 2304 95 0 0 chr11 147770912 147771208 -3012345 + AluSg SINE Alu 2 297 -13 458 265 152 48 chr11 147772497 147772806 -3010747 - L2 LINE L2 0 3272 2932 215 207 69 0 chr11 147772822 147772880 -3010673 - MIR SINE MIR -88 174 113 307 284 17 51 chr11 147773312 147773488 -3010065 + GA-rich Low_complexity Low_complexity 5 174 0 2141 89 3 3 chr11 147774255 147774537 -3009016 + AluSg SINE Alu 16 297 -13 1446 116 15 143 chr11 147774929 147775258 -3008295 - AluJo SINE Alu -14 288 2 21 36 0 0 chr11 147775910 147775938 -3007615 + GC_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr11 147776125 147776178 -3007375 + GC_rich Low_complexity Low_complexity 1 53 0 291 114 0 0 chr11 147778727 147778771 -3004782 + (T)n Simple_repeat Simple_repeat 1 44 0 1960 95 0 0 chr11 147780767 147781008 -3002545 - AluSg SINE Alu -66 244 4 198 0 0 0 chr11 147781312 147781334 -3002219 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 209 191 43 0 chr11 147781717 147781764 -3001789 + GA-rich Low_complexity Low_complexity 2 50 0 2313 116 0 0 chr11 147782105 147782415 -3001138 - AluSx SINE Alu -2 310 1 2080 122 40 0 chr11 147783800 147784096 -2999457 - AluSg SINE Alu -2 308 1 285 327 170 0 chr11 147784738 147784891 -2998662 - MIR SINE MIR 0 262 84 1372 287 59 18 chr11 147784923 147785533 -2998020 + L1ME2 LINE L1 5318 5952 -212 286 251 2 34 chr11 147785635 147785760 -2997793 + L1MC5 LINE L1 7844 8038 -4 225 0 0 0 chr11 147786235 147786260 -2997293 + (TG)n Simple_repeat Simple_repeat 2 26 0 242 360 0 11 chr11 147786813 147786902 -2996651 - MER5B DNA MER1_type -88 90 3 723 220 69 12 chr11 147787000 147787173 -2996380 + MIR SINE MIR 32 214 -48 659 249 50 6 chr11 147787177 147787358 -2996195 + MIR SINE MIR 74 262 0 1332 240 23 3 chr11 147789316 147789624 -2993929 + MER58B DNA MER1_type 27 340 -1 245 326 101 0 chr11 147789774 147789863 -2993690 - MIR3 SINE MIR -15 193 96 497 263 30 40 chr11 147789989 147790187 -2993366 - MER117 DNA MER1_type 0 197 2 537 300 17 22 chr11 147790224 147790404 -2993149 + MIR3 SINE MIR 22 200 -8 1517 155 47 44 chr11 147791864 147792161 -2991392 + AluJo SINE Alu 1 298 -14 2283 93 0 0 chr11 147792162 147792463 -2991090 + AluSg1 SINE Alu 1 301 -8 207 225 42 56 chr11 147792963 147793034 -2990519 - L2 LINE L2 -248 3065 2996 509 318 87 32 chr11 147793209 147793398 -2990155 - L2 LINE L2 -575 2739 2562 1723 43 0 5 chr11 147793398 147793607 -2989946 - L1PA7 LINE L1 0 6154 5947 509 318 87 32 chr11 147793607 147793829 -2989724 - L2 LINE L2 -752 2562 2305 554 236 18 0 chr11 147795451 147795561 -2987992 - MER58A DNA MER1_type 0 224 113 1959 127 7 3 chr11 147795562 147795869 -2987684 - AluSx SINE Alu -4 308 1 323 157 0 0 chr11 147795869 147795920 -2987633 - MER58A DNA MER1_type -30 77 27 366 300 62 5 chr11 147795928 147796080 -2987473 + MIR SINE MIR 93 254 -8 27 29 0 0 chr11 147796214 147796248 -2987305 + AT_rich Low_complexity Low_complexity 1 34 0 1003 52 8 15 chr11 147797300 147797434 -2986119 - L1PA7 LINE L1 -6 6148 6016 516 295 29 0 chr11 147797570 147797743 -2985810 - MER5A DNA MER1_type 0 189 12 195 306 12 24 chr11 147798218 147798303 -2985250 - L2 LINE L2 -158 3114 3031 548 307 53 22 chr11 147798353 147798581 -2984972 - MIR SINE MIR -25 237 3 291 165 110 44 chr11 147798621 147798712 -2984841 - L1ME4a LINE L1 -2 6119 6023 504 289 73 32 chr11 147798797 147799140 -2984413 - L1ME4a LINE L1 -238 5883 5527 183 42 0 0 chr11 147800396 147800420 -2983133 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 805 109 86 0 chr11 147800433 147800561 -2982992 - MER85 DNA T2_type 0 139 1 25 0 0 0 chr11 147800607 147800632 -2982921 + AT_rich Low_complexity Low_complexity 1 25 0 330 258 245 12 chr11 147800930 147801002 -2982551 - L1MC4a LINE L1 -1631 6177 6123 2207 81 3 0 chr11 147801002 147801323 -2982230 + AluSp SINE Alu 1 322 0 330 258 245 12 chr11 147801323 147801412 -2982141 - L1MC4a LINE L1 -1685 6123 5977 1370 100 9 14 chr11 147802345 147802565 -2980988 - L1PA13 LINE L1 -7 6156 5938 2243 102 57 6 chr11 147802866 147803220 -2980333 - L1MA8 LINE L1 -3 6288 5917 2457 71 0 12 chr11 147803220 147803543 -2980010 + L1PA12 LINE L1 5740 6058 -110 1671 137 29 11 chr11 147803643 147803920 -2979633 - L1MA8 LINE L1 -423 5868 5587 191 299 51 66 chr11 147804488 147804625 -2978928 - MIR SINE MIR -111 151 17 2295 75 7 0 chr11 147804883 147805175 -2978378 - AluSx SINE Alu -18 294 1 200 273 0 18 chr11 147806545 147806600 -2976953 - L2 LINE L2 -3 3310 3257 746 211 13 7 chr11 147807936 147808088 -2975465 + AluJb SINE Alu 142 294 -18 501 330 11 22 chr11 147808115 147808294 -2975259 - MIR SINE MIR -14 248 72 7205 153 46 34 chr11 147810228 147811212 -2972341 - L1 LINE L1 -1423 4723 3713 2767 7 0 0 chr11 147811212 147811518 -2972035 - AluYa5 SINE Alu -5 306 1 7205 153 46 34 chr11 147811518 147812035 -2971518 - L1 LINE L1 -2433 3713 3204 6051 139 32 6 chr11 147812030 147813612 -2969941 + L1MA4A LINE L1 4681 6298 -5 * 350 245 90 45 chr11 147813796 147813951 -2969602 - L1MC5 LINE L1 -425 7536 7375 2266 105 3 0 chr11 147814739 147815044 -2968509 - AluSx SINE Alu -6 306 1 369 308 41 0 chr11 147816202 147816348 -2967205 + MER103 DNA DNA 2 153 -13 565 167 105 18 chr11 147816364 147816478 -2967075 - FLAM_A SINE Alu -9 124 1 715 289 24 19 chr11 147816798 147817009 -2966544 - MIR SINE MIR -19 243 32 861 122 7 41 chr11 147817399 147817546 -2966007 + FLAM_C SINE Alu 1 142 -1 374 222 11 56 chr11 147817547 147817637 -2965916 - MIR SINE MIR -91 171 86 241 387 60 4 chr11 147817785 147818020 -2965533 - L2 LINE L2 -637 2677 2430 245 353 33 8 chr11 147818474 147818596 -2964957 - MIR3 SINE MIR -2 206 82 401 211 11 11 chr11 147819044 147819134 -2964419 - MIR SINE MIR -110 152 63 460 244 0 0 chr11 147819313 147819403 -2964150 - MIR3 SINE MIR -34 174 85 585 275 89 34 chr11 147821094 147821330 -2962223 + MIR SINE MIR 3 251 -11 785 185 119 0 chr11 147821557 147821708 -2961845 - FAM SINE Alu -6 169 1 1266 226 85 15 chr11 147821915 147822256 -2961297 - MLT1A1 LTR MaLR 0 365 1 561 265 8 0 chr11 147822486 147822618 -2960935 - MIR SINE MIR -10 252 120 348 362 58 5 chr11 147822627 147822678 -2960875 - MIR SINE MIR -1 261 214 2341 63 3 7 chr11 147822678 147822978 -2960575 - AluY SINE Alu -12 299 1 348 362 58 5 chr11 147822978 147823114 -2960439 - MIR SINE MIR -48 214 64 415 120 0 54 chr11 147825339 147825431 -2958122 + (AGGGGG)n Simple_repeat Simple_repeat 5 91 0 224 348 37 22 chr11 147825679 147825814 -2957739 + L2 LINE L2 3171 3307 -6 2866 139 36 9 chr11 147825819 147826266 -2957287 + MER66B LTR ERV1 28 486 0 2398 71 0 0 chr11 147826330 147826638 -2956915 - AluY SINE Alu -3 308 1 525 232 9 9 chr11 147826780 147826892 -2956661 - MER5B DNA MER1_type -3 175 64 2469 66 0 0 chr11 147827234 147827539 -2956014 - AluY SINE Alu -6 305 1 1020 220 50 67 chr11 147828060 147828479 -2955074 + HAL1 LINE L1 780 1191 -1316 269 256 146 85 chr11 147828504 147828668 -2954885 - MIR SINE MIR -36 226 53 301 210 42 76 chr11 147828834 147828953 -2954600 + HAL1 LINE L1 1361 1475 -1032 444 255 133 62 chr11 147829762 147830115 -2953438 - L2 LINE L2 -72 3241 2864 233 292 55 151 chr11 147830467 147830591 -2952962 + L2 LINE L2 2886 3020 -252 644 119 127 0 chr11 147830591 147830709 -2952844 - FLAM_C SINE Alu 0 133 1 233 292 55 151 chr11 147830709 147831002 -2952551 + L2 LINE L2 3020 3263 -9 235 385 100 0 chr11 147831129 147831259 -2952294 + L3 LINE CR1 1056 1198 -379 209 296 122 20 chr11 147831262 147831360 -2952193 + L2 LINE L2 3158 3265 -7 252 260 45 84 chr11 147831409 147831563 -2951990 + L3 LINE CR1 1429 1576 -1 183 42 0 0 chr11 147831809 147831833 -2951720 + (CAT)n Simple_repeat Simple_repeat 3 26 0 262 277 84 34 chr11 147832056 147832175 -2951378 + L2 LINE L2 3086 3210 -62 379 308 35 66 chr11 147832192 147832390 -2951163 + MIR SINE MIR 1 192 -70 268 302 141 61 chr11 147832495 147832872 -2950681 - L2 LINE L2 0 3313 2907 1229 154 0 24 chr11 147834689 147834897 -2948656 + AluJo SINE Alu 87 289 -23 259 271 23 93 chr11 147835736 147835865 -2947688 + L2 LINE L2 3192 3311 -2 264 275 53 61 chr11 147836019 147836150 -2947403 - MIR SINE MIR -51 211 82 311 299 85 37 chr11 147836237 147836401 -2947152 - MIR SINE MIR -56 206 35 2202 125 0 0 chr11 147836659 147836955 -2946598 - AluSx SINE Alu -16 296 1 26 30 0 0 chr11 147837171 147837204 -2946349 + AT_rich Low_complexity Low_complexity 1 33 0 335 269 0 0 chr11 147837557 147837624 -2945929 - MER5A DNA MER1_type -120 69 3 233 303 169 15 chr11 147837629 147837824 -2945729 + L2 LINE L2 1925 2149 -1165 475 304 125 5 chr11 147837828 147838012 -2945541 + L2 LINE L2 2569 2774 -540 374 318 55 115 chr11 147838049 147838467 -2945086 + L2 LINE L2 2865 3257 -15 600 225 0 62 chr11 147838585 147838615 -2944938 + FLAM_A SINE Alu 1 31 -280 3035 151 8 45 chr11 147838615 147839120 -2944433 + MER66B LTR ERV1 1 486 0 600 225 0 62 chr11 147839120 147839218 -2944335 + FLAM_A SINE Alu 31 121 -190 237 83 0 0 chr11 147839218 147839254 -2944299 + (GA)n Simple_repeat Simple_repeat 1 36 0 222 347 90 80 chr11 147840750 147841038 -2942515 + L2 LINE L2 2977 3267 -5 1868 153 20 3 chr11 147841324 147841618 -2941935 - AluJo SINE Alu -13 299 1 241 247 91 0 chr11 147842768 147842845 -2940708 - MIR SINE MIR -156 106 23 27 0 0 0 chr11 147843461 147843488 -2940065 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr11 147843504 147843526 -2940027 + AT_rich Low_complexity Low_complexity 1 22 0 42 20 0 0 chr11 147843936 147843985 -2939568 + AT_rich Low_complexity Low_complexity 1 49 0 634 224 160 13 chr11 147844276 147844513 -2939040 + L1ME3A LINE L1 5678 5949 -221 816 191 15 0 chr11 147844673 147844804 -2938749 - FLAM_C SINE Alu -10 133 1 25 0 0 0 chr11 147844903 147844928 -2938625 + AT_rich Low_complexity Low_complexity 1 25 0 34 0 0 0 chr11 147845192 147845226 -2938327 + AT_rich Low_complexity Low_complexity 1 34 0 1316 214 135 0 chr11 147845367 147845633 -2937920 - AluJo SINE Alu 0 302 1 484 202 17 42 chr11 147845638 147845711 -2937842 + MIR SINE MIR 120 190 -72 1867 159 7 3 chr11 147845711 147846019 -2937534 + AluSx SINE Alu 1 309 -3 484 202 17 42 chr11 147846019 147846064 -2937489 + MIR SINE MIR 190 235 -27 605 307 40 13 chr11 147846925 147847150 -2936403 - MIR SINE MIR -27 235 5 2365 47 7 17 chr11 147847566 147847862 -2935691 + AluY SINE Alu 1 293 -18 29 90 0 0 chr11 147848790 147848868 -2934685 + AT_rich Low_complexity Low_complexity 1 78 0 2428 84 0 0 chr11 147850677 147850985 -2932568 - AluY SINE Alu -3 308 1 3566 168 20 0 chr11 147852652 147853241 -2930312 + MER6A DNA MER2_type 1 601 -4 2091 114 0 17 chr11 147853572 147853870 -2929683 - AluSx SINE Alu -19 293 1 263 255 64 21 chr11 147854679 147854773 -2928780 - MIR3 SINE MIR -1 207 110 630 222 8 0 chr11 147855845 147855962 -2927591 - FLAM_C SINE Alu -24 119 2 1862 176 0 3 chr11 147856077 147856383 -2927170 - AluJo SINE Alu -7 305 1 2090 143 3 0 chr11 147856480 147856787 -2926766 - AluSq SINE Alu -5 308 1 2271 104 0 0 chr11 147856902 147857199 -2926354 - AluSg SINE Alu -13 297 1 2078 122 35 0 chr11 147857645 147857932 -2925621 - AluSg SINE Alu -13 297 1 308 314 109 0 chr11 147858808 147858945 -2924608 - MIR SINE MIR -78 184 33 2301 105 0 13 chr11 147860155 147860461 -2923092 - AluSx SINE Alu -10 302 1 346 319 60 0 chr11 147860951 147861067 -2922486 - MIR SINE MIR -48 214 92 1914 153 24 0 chr11 147863034 147863322 -2920231 + AluJo SINE Alu 1 295 -17 315 292 60 18 chr11 147863354 147863522 -2920031 + L1M4 LINE L1 4674 4848 -1298 3076 213 51 47 chr11 147864321 147864640 -2918913 - L1ME1 LINE L1 -17 6149 5833 1794 143 4 0 chr11 147864640 147864912 -2918641 - AluSx SINE Alu -6 306 34 3076 213 51 47 chr11 147864912 147865848 -2917705 - L1ME1 LINE L1 -333 5833 4891 26 30 0 0 chr11 147865848 147865881 -2917672 + AT_rich Low_complexity Low_complexity 1 33 0 1866 116 4 0 chr11 147865896 147866146 -2917407 - AluSx SINE Alu -61 251 1 23 0 0 0 chr11 147866548 147866571 -2916982 + AT_rich Low_complexity Low_complexity 1 23 0 1701 267 128 25 chr11 147866640 147867777 -2915776 + L2 LINE L2 2041 3310 -3 549 176 0 20 chr11 147868069 147868159 -2915394 + AluSg/x SINE Alu 199 288 -22 7080 54 2 0 chr11 147868159 147868994 -2914559 + L1PA7 LINE L1 5317 6153 -1 549 176 0 20 chr11 147868994 147869005 -2914548 + AluSg/x SINE Alu 288 298 -12 271 301 14 0 chr11 147869178 147869251 -2914302 - L2 LINE L2 -63 3209 3136 288 299 10 41 chr11 147869968 147870065 -2913488 - MIR3 SINE MIR -17 191 98 402 239 0 0 chr11 147870822 147870914 -2912639 - MIR3 SINE MIR -1 207 116 893 90 0 25 chr11 147871073 147871195 -2912358 - AluSg/x SINE Alu -117 195 77 1108 296 121 46 chr11 147871348 147872607 -2910946 - L1M4 LINE L1 -1088 5058 3896 2041 122 7 7 chr11 147872607 147872903 -2910650 - AluSx SINE Alu -16 296 1 1108 296 121 46 chr11 147872903 147873787 -2909766 - L1M4 LINE L1 -2250 3896 2643 2368 114 19 114 chr11 147873939 147874370 -2909183 + MLT1B LTR MaLR 1 390 0 214 156 31 0 chr11 147874621 147874685 -2908868 + (TA)n Simple_repeat Simple_repeat 2 67 0 736 131 25 8 chr11 147925253 147925375 -2858178 + L1MC1 LINE L1 6201 6324 -9 976 214 92 7 chr11 147925413 147925684 -2857869 + MLT1C LTR MaLR 174 467 0 417 255 118 13 chr11 147925717 147925870 -2857683 + LTR16A LTR ERVL 233 401 -49 338 350 34 0 chr11 147925939 147926056 -2857497 + L2 LINE L2 3192 3312 -1 672 124 0 0 chr11 147926150 147926255 -2857298 + (GGAA)n Simple_repeat Simple_repeat 2 106 0 4571 91 18 0 chr11 147926359 147926962 -2856591 + L1PA10 LINE L1 5555 6168 0 5280 137 17 2 chr11 147926962 147928269 -2855284 + L1P4 LINE L1 4411 5736 -427 1937 196 22 55 chr11 147928381 147928928 -2854625 - L1MDa LINE L1 -4816 1724 1196 250 130 0 0 chr11 147928948 147928994 -2854559 - L1PA2 LINE L1 -2 6153 6108 25 0 0 0 chr11 147929222 147929247 -2854306 + AT_rich Low_complexity Low_complexity 1 25 0 2751 234 82 45 chr11 147929339 147930068 -2853485 - L1MDa LINE L1 -5334 1206 352 282 29 0 0 chr11 147930068 147930103 -2853450 + (TG)n Simple_repeat Simple_repeat 2 36 0 2751 234 82 45 chr11 147930103 147930469 -2853084 - L1MDa LINE L1 -6188 352 1 2985 123 22 34 chr11 147930472 147930976 -2852577 - L1MA7 LINE L1 0 6291 5794 815 196 78 102 chr11 147932275 147932373 -2851180 + MIR SINE MIR 13 112 -150 2136 90 0 14 chr11 147932373 147932652 -2850901 - AluSg SINE Alu -14 296 22 1798 70 9 22 chr11 147932652 147932881 -2850672 - AluSq SINE Alu -66 247 21 1762 74 9 26 chr11 147932881 147933109 -2850444 - AluSq SINE Alu -66 247 22 1946 68 8 28 chr11 147933109 147933360 -2850193 - AluSq SINE Alu -66 247 1 815 196 78 102 chr11 147933360 147933513 -2850040 + MIR SINE MIR 108 261 -1 461 261 46 26 chr11 147933672 147933825 -2849728 + MER5B DNA MER1_type 21 176 -2 443 238 131 54 chr11 147933843 147934011 -2849542 + MER5A DNA MER1_type 9 189 0 204 277 0 21 chr11 147934011 147934046 -2849507 + MIR3 SINE MIR 154 187 -21 1814 151 23 40 chr11 147934938 147935288 -2848265 - L1MB3 LINE L1 -20 6163 5820 420 55 0 0 chr11 147935552 147935607 -2847946 + (TG)n Simple_repeat Simple_repeat 2 56 0 366 281 156 16 chr11 147935909 147936037 -2847516 - MIR3 SINE MIR -28 180 35 277 204 0 0 chr11 147938136 147938180 -2845373 - L2 LINE L2 -8 3264 3221 1073 312 70 18 chr11 147938410 147938968 -2844585 + HAL1b LINE L1 53 639 -709 2192 220 107 33 chr11 147939257 147940039 -2843514 + L1MC5 LINE L1 6547 7395 -566 326 167 167 111 chr11 147940049 147940265 -2843288 + L1MC5 LINE L1 7450 7677 -284 913 240 10 5 chr11 147940292 147940492 -2843061 + L1MC5 LINE L1 6625 6825 -1136 444 299 37 12 chr11 147940490 147940654 -2842899 + L1MC5 LINE L1 7739 7906 -55 * 470 288 28 53 chr11 147941060 147941245 -2842308 - MIR SINE MIR -50 212 30 2573 50 0 0 chr11 147942787 147943086 -2840467 + AluY SINE Alu 3 301 -10 4274 183 13 1 chr11 147943088 147943800 -2839753 - MER44D DNA MER2_type 0 605 14 22 0 0 0 chr11 147943833 147943855 -2839698 + AT_rich Low_complexity Low_complexity 1 22 0 499 276 53 0 chr11 147944372 147944524 -2839029 - MIR3 SINE MIR -4 204 45 527 268 45 67 chr11 147944581 147944716 -2838837 - MIR SINE MIR -42 220 90 2029 164 70 3 chr11 147944716 147945058 -2838495 - MLT1A1 LTR MaLR 0 365 1 527 268 45 67 chr11 147945058 147945146 -2838407 - MIR SINE MIR -172 90 2 326 319 114 24 chr11 147946937 147947191 -2836362 + L2 LINE L2 2556 2832 -482 202 305 108 96 chr11 147947240 147947489 -2836064 + L2 LINE L2 2932 3183 -89 191 270 48 0 chr11 147948357 147948420 -2835133 + MIR3 SINE MIR 135 200 -8 254 309 41 49 chr11 147948604 147948727 -2834826 - MIR SINE MIR -128 134 13 * 355 239 0 0 chr11 147948714 147948785 -2834768 - MIR3 SINE MIR -51 157 87 415 318 8 8 chr11 147949400 147949532 -2834021 - MIR3 SINE MIR -52 156 25 455 312 16 8 chr11 147949976 147950101 -2833452 - L2 LINE L2 -1 3271 3146 1242 262 70 118 chr11 147950165 147951520 -2832033 + L1MEd LINE L1 67 1387 -4877 537 219 186 11 chr11 147952232 147952415 -2831138 - MIR SINE MIR 0 262 48 214 222 163 59 chr11 147953826 147953961 -2829592 - L2 LINE L2 -2414 900 752 548 254 87 120 chr11 147954300 147954578 -2828975 + L2 LINE L2 2398 2684 -630 2921 65 8 3 chr11 147954578 147954931 -2828622 - THE1A LTR MaLR 0 355 1 12609 95 1 2 chr11 147954931 147956513 -2827040 - THE1A-int LTR MaLR 0 1580 1 2390 92 92 3 chr11 147956513 147956839 -2826714 - THE1A LTR MaLR 0 355 1 548 254 87 120 chr11 147956839 147956953 -2826600 + L2 LINE L2 2682 2798 -516 2140 132 0 7 chr11 147956953 147957248 -2826305 + AluSx SINE Alu 5 297 -15 548 254 87 120 chr11 147957248 147957450 -2826103 + L2 LINE L2 2798 2975 -339 261 238 95 38 chr11 147957510 147957615 -2825938 + L2 LINE L2 3118 3228 -85 448 301 55 0 chr11 147957691 147957837 -2825716 + LTR16A LTR ERVL 26 179 -271 419 291 39 64 chr11 147957860 147957965 -2825588 + MLT1D LTR MaLR 5 104 -401 2778 127 20 5 chr11 147957965 147958368 -2825185 - L1PA15 LINE L1 0 6165 5757 419 291 39 64 chr11 147958368 147958465 -2825088 + MLT1D LTR MaLR 104 202 -303 712 168 29 7 chr11 147958465 147958602 -2824951 + L1MC1 LINE L1 6070 6209 -124 369 93 0 0 chr11 147958710 147958764 -2824789 + (GGGA)n Simple_repeat Simple_repeat 4 57 0 549 256 26 26 chr11 147959122 147959278 -2824275 - MIR3 SINE MIR -11 197 42 326 317 131 38 chr11 147959404 147959587 -2823966 - MIR SINE MIR -48 214 15 200 346 27 48 chr11 147960184 147960372 -2823181 + L2 LINE L2 2561 2744 -570 513 148 102 108 chr11 147960638 147960757 -2822796 - MER5B DNA MER1_type 0 178 58 2149 109 0 3 chr11 147960757 147961061 -2822492 - AluSx SINE Alu 0 303 1 513 148 102 108 chr11 147961061 147961116 -2822437 - MER5B DNA MER1_type -120 58 4 497 253 25 74 chr11 147961510 147961672 -2821881 - MIR SINE MIR -36 226 73 2598 160 28 26 chr11 147961715 147961908 -2821645 + MSTB LTR MaLR 1 192 -234 2495 91 0 0 chr11 147961908 147962215 -2821338 + AluSc SINE Alu 1 307 -2 2598 160 28 26 chr11 147962215 147962446 -2821107 + MSTB LTR MaLR 192 426 0 3377 200 23 0 chr11 147962446 147963100 -2820453 + MSTB-int LTR MaLR 1 669 -982 624 143 214 3 chr11 147963121 147963248 -2820305 + LTR28 LTR ERV1 1 672 -606 12362 119 13 17 chr11 147963248 147965545 -2818008 + LTR27-int LTR ERV1 2213 5217 0 2176 188 59 19 chr11 147965545 147966047 -2817506 + LTR27 LTR ERV1 3 501 0 4442 194 72 8 chr11 147966047 147966939 -2816614 + MSTB-int LTR MaLR 703 1651 0 2694 178 14 2 chr11 147966939 147967360 -2816193 + MSTB LTR MaLR 1 426 0 1003 200 107 39 chr11 147967965 147968038 -2815515 + MSTD LTR MaLR 2 69 -327 2726 159 12 86 chr11 147968038 147968610 -2814943 - LTR26B LTR ERV1 0 531 2 1003 200 107 39 chr11 147968610 147968873 -2814680 + MSTD LTR MaLR 69 396 0 3632 223 53 55 chr11 147968875 147969889 -2813664 + MSTD-int LTR MaLR 2 1013 -722 2150 234 31 2 chr11 147970004 147970448 -2813105 + MSTD-int LTR MaLR 1279 1735 0 1093 184 104 23 chr11 147970448 147970770 -2812783 + MSTD LTR MaLR 1 383 0 430 247 94 69 chr11 147971132 147971656 -2811897 + L1ME3A LINE L1 789 1303 -4902 865 352 62 34 chr11 147971683 147972251 -2811302 + L1PA16 LINE L1 788 1371 -6203 264 280 161 28 chr11 147972279 147972422 -2811131 + L1PA16 LINE L1 2145 2306 -5268 14861 214 31 12 chr11 147973083 147973197 -2810356 + L1PA16 LINE L1 2189 2299 -5305 267 31 0 0 chr11 147973197 147973229 -2810324 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 14861 214 31 12 chr11 147973229 147977942 -2805611 + L1PA16 LINE L1 2299 7088 -516 381 75 8 0 chr11 147977942 147977999 -2805554 - MLT2A1 LTR ERVL 0 444 397 237 192 0 109 chr11 147978073 147978266 -2805287 + (CTATT)n Simple_repeat Simple_repeat 2 173 0 237 192 0 109 chr11 147978277 147978470 -2805083 + (CTATT)n Simple_repeat Simple_repeat 2 173 0 237 192 0 109 chr11 147978481 147978674 -2804879 + (CTATT)n Simple_repeat Simple_repeat 2 173 0 237 192 0 109 chr11 147978685 147978878 -2804675 + (CTATT)n Simple_repeat Simple_repeat 2 173 0 380 84 0 141 chr11 147978923 147979332 -2804221 + (CTATT)n Simple_repeat Simple_repeat 1 351 0 3133 73 13 0 chr11 147979351 147979748 -2803805 - MLT2A1 LTR ERVL -42 402 1 3152 146 36 0 chr11 147979748 147980248 -2803305 + L1PA16 LINE L1 7084 7601 -3 582 246 131 110 chr11 147980251 147981239 -2802314 + L1ME3A LINE L1 1383 2390 -4006 * 2105 239 84 3 chr11 147981227 147981952 -2801601 + L1ME3A LINE L1 2600 3383 -2832 1432 168 71 11 chr11 147982001 147982281 -2801272 + AluJb SINE Alu 1 297 -15 985 181 26 30 chr11 147982364 147982596 -2800957 - MER106A DNA MER1_type 0 236 6 2794 219 54 70 chr11 147982599 147983624 -2799929 + L1ME3A LINE L1 5210 6234 -5 332 194 231 19 chr11 147983729 147983837 -2799716 + MIR3 SINE MIR 13 143 -65 2128 222 92 4 chr11 147984473 147984659 -2798894 + L1MC4 LINE L1 6459 6627 -1415 234 0 0 0 chr11 147984659 147984685 -2798868 + (TG)n Simple_repeat Simple_repeat 2 27 0 2128 222 92 4 chr11 147984685 147985011 -2798542 + L1MC4 LINE L1 6627 7016 -1026 2887 169 113 9 chr11 147985041 147985614 -2797939 + MER39 LTR ERV1 75 707 0 1979 239 64 22 chr11 147985694 147986288 -2797265 + L1MC4 LINE L1 7240 7858 -184 225 182 68 0 chr11 147986542 147986586 -2796967 - L2 LINE L2 -75 3238 3192 200 403 55 17 chr11 147986633 147986814 -2796739 + MIR SINE MIR 20 207 -55 3154 61 10 13 chr11 147987424 147987818 -2795735 - L1PA6 LINE L1 -1 6153 5761 460 325 57 0 chr11 147988861 147989055 -2794498 + MIR SINE MIR 14 218 -44 303 207 119 132 chr11 147989058 147989309 -2794244 - MER74C LTR ERVL -14 608 303 * 797 173 122 3 chr11 147989289 147989468 -2794085 - MER74C LTR ERVL -273 187 6 1861 197 57 39 chr11 147989639 147989887 -2793666 - MLT1D LTR MaLR 0 505 263 2435 75 0 0 chr11 147989887 147990195 -2793358 - AluSc SINE Alu -1 308 1 1861 197 57 39 chr11 147990195 147990439 -2793114 - MLT1D LTR MaLR -242 263 4 198 213 43 0 chr11 147990885 147990932 -2792621 + L2 LINE L2 3133 3181 -91 263 269 0 30 chr11 147991347 147991414 -2792139 - MIR SINE MIR -6 256 192 236 250 0 0 chr11 147991896 147991948 -2791605 + (CA)n Simple_repeat Simple_repeat 1 52 0 2085 115 3 0 chr11 147992259 147992555 -2790998 + AluSp SINE Alu 1 297 -16 339 278 120 21 chr11 147992605 147992796 -2790757 + LTR40a LTR ERVL 224 433 -86 196 338 0 29 chr11 147992944 147993012 -2790541 - MIR SINE MIR -87 121 56 288 286 113 49 chr11 147993808 147993993 -2789560 - L2 LINE L2 -5 3308 3112 1716 55 0 18 chr11 147994018 147994237 -2789316 + AluY SINE Alu 89 303 -8 211 264 88 40 chr11 147995056 147995147 -2788406 - MIR SINE MIR -84 178 78 1241 199 186 13 chr11 147995147 147995458 -2788095 + MLT1A1 LTR MaLR 1 365 0 211 264 88 40 chr11 147995458 147995491 -2788062 - MIR SINE MIR -184 78 48 520 288 4 0 chr11 147995494 147995768 -2787785 + G-rich Low_complexity Low_complexity 1 275 0 545 285 0 0 chr11 147995805 147995984 -2787569 + G-rich Low_complexity Low_complexity 1 179 0 486 298 0 0 chr11 147995998 147996176 -2787377 + G-rich Low_complexity Low_complexity 2 179 0 467 307 0 0 chr11 147996213 147996392 -2787161 + G-rich Low_complexity Low_complexity 1 179 0 521 68 14 0 chr11 147996701 147996775 -2786778 + (TG)n Simple_repeat Simple_repeat 1 75 0 369 245 63 49 chr11 147996785 147996862 -2786691 - MER103 DNA DNA -16 150 69 2247 94 0 0 chr11 147996862 147997159 -2786394 + AluSc SINE Alu 12 308 -1 369 245 63 49 chr11 147997159 147997224 -2786329 - MER103 DNA DNA -97 69 6 185 224 20 20 chr11 147997284 147997333 -2786220 - MIR3 SINE MIR -51 157 109 3277 188 91 39 chr11 147997795 147998238 -2785315 - L1MB8 LINE L1 -1 6177 5676 2117 118 3 0 chr11 147998238 147998535 -2785018 - AluSx SINE Alu -14 298 1 3277 188 91 39 chr11 147998535 147998858 -2784695 - L1MB8 LINE L1 -502 5676 5371 718 309 139 26 chr11 147999666 148000096 -2783457 + L3 LINE CR1 1088 1566 -11 190 224 20 61 chr11 148000288 148000337 -2783216 - L2 LINE L2 -80 3233 3187 438 196 88 0 chr11 148000713 148000815 -2782738 - MIR3 SINE MIR -7 201 91 545 293 73 39 chr11 148000847 148001079 -2782474 - MIR SINE MIR -3 259 20 670 261 92 5 chr11 148001091 148001298 -2782255 + MIR SINE MIR 28 252 -10 222 387 11 0 chr11 148002176 148002269 -2781284 - MIR SINE MIR -8 254 161 226 312 46 18 chr11 148002282 148002391 -2781162 + MIR SINE MIR 33 144 -64 280 237 13 13 chr11 148002691 148002767 -2780786 + MIR3 SINE MIR 111 186 -22 449 305 42 0 chr11 148003592 148003710 -2779843 + MIR SINE MIR 26 148 -114 272 27 27 0 chr11 148003839 148003876 -2779677 + (CAT)n Simple_repeat Simple_repeat 3 40 0 310 241 12 36 chr11 148003937 148004020 -2779533 + MER103 DNA DNA 3 83 -83 318 233 113 90 chr11 148006017 148006150 -2777403 + MIR SINE MIR 20 155 -107 483 241 103 14 chr11 148006818 148006963 -2776590 - MIR SINE MIR -71 191 34 260 213 0 21 chr11 148007098 148007134 -2776419 + AluJ/monomer SINE Alu 1 37 -265 2032 122 0 13 chr11 148007134 148007438 -2776115 + AluSx SINE Alu 1 300 -12 287 274 0 16 chr11 148007594 148007656 -2775897 + MIR SINE MIR 6 66 -196 313 301 18 16 chr11 148007683 148007909 -2775644 + L1ME3 LINE L1 4936 5164 -982 14189 162 27 20 chr11 148007921 148011618 -2771935 + L1PA8 LINE L1 3 3785 -2676 414 147 0 0 chr11 148011609 148011677 -2771876 + L1PA8 LINE L1 4263 4330 -2131 * 6657 78 25 0 chr11 148011677 148013149 -2770404 + L1PA8 LINE L1 5001 6487 0 1022 282 89 37 chr11 148013164 148013896 -2769657 + L1ME3 LINE L1 5187 5951 -211 1482 126 82 11 chr11 148014381 148014651 -2768902 - L1MB8 LINE L1 0 6178 5890 373 302 43 9 chr11 148014880 148014996 -2768557 - MIR SINE MIR -142 120 1 180 231 77 0 chr11 148016572 148016611 -2766942 + L2 LINE L2 3189 3230 -83 495 299 71 27 chr11 148016845 148017029 -2766524 - MIR SINE MIR -43 219 28 691 236 207 5 chr11 148017923 148018131 -2765422 + L2 LINE L2 1745 1994 -1320 459 240 20 10 chr11 148018136 148018236 -2765317 + L2 LINE L2 3209 3309 -4 302 294 113 31 chr11 148018242 148018402 -2765151 - L2 LINE L2 -229 3043 2871 366 333 48 37 chr11 148019448 148019637 -2763916 - MIR3 SINE MIR -1 207 17 331 222 32 0 chr11 148020919 148020982 -2762571 + MIR SINE MIR 90 154 -108 1519 131 97 21 chr11 148021096 148021386 -2762167 - AluSx SINE Alu 0 312 1 330 61 0 0 chr11 148022873 148022922 -2760631 - L1PA6 LINE L1 -1 6153 6105 1680 158 0 7 chr11 148023199 148023478 -2760075 + AluJb SINE Alu 1 277 -35 203 307 13 27 chr11 148023569 148023644 -2759909 - MIR SINE MIR 0 262 189 343 314 57 14 chr11 148024052 148024192 -2759361 + MIR SINE MIR 47 192 -70 288 320 8 24 chr11 148024972 148025097 -2758456 - MIR SINE MIR -50 212 90 445 259 228 37 chr11 148025285 148025474 -2758079 + MIR SINE MIR 38 262 0 257 328 78 17 chr11 148026510 148026690 -2756863 - L2 LINE L2 -220 3052 2862 260 293 73 0 chr11 148026824 148026906 -2756647 + MIR SINE MIR 109 196 -66 222 347 0 0 chr11 148028229 148028304 -2755249 + (CGTG)n Simple_repeat Simple_repeat 1 75 0 490 238 49 8 chr11 148028374 148028496 -2755057 + L2 LINE L2 3186 3312 -1 267 297 156 16 chr11 148028854 148028982 -2754571 + MIR SINE MIR 111 256 -6 250 276 0 0 chr11 148030114 148030190 -2753363 + CT-rich Low_complexity Low_complexity 1 76 0 224 187 40 93 chr11 148030370 148030445 -2753108 - MIR SINE MIR -96 166 96 1054 196 0 0 chr11 148030887 148031076 -2752477 + MER5A DNA MER1_type 1 189 0 256 326 94 43 chr11 148031084 148031360 -2752193 + L2 LINE L2 2804 3093 -179 210 320 0 53 chr11 148031441 148031516 -2752037 + L2 LINE L2 3243 3313 0 1776 163 54 3 chr11 148031535 148031848 -2751705 + MER2 DNA MER2_type 1 329 -16 239 263 182 0 chr11 148032502 148032601 -2750952 - L2 LINE L2 -13 3300 3184 362 291 69 82 chr11 148033139 148033445 -2750108 + L2 LINE L2 1626 1927 -1387 242 280 40 0 chr11 148033449 148033524 -2750029 - L2 LINE L2 0 3272 3195 363 329 71 0 chr11 148033574 148033729 -2749824 + L2 LINE L2 1957 2122 -1192 212 301 153 52 chr11 148033760 148033989 -2749564 + L2 LINE L2 2231 2482 -832 5514 170 60 21 chr11 148034179 148035305 -2748248 + Charlie1a DNA MER1_type 1 1169 -286 648 231 35 15 chr11 148035331 148035534 -2748019 + Charlie1a DNA MER1_type 1249 1455 0 616 324 69 13 chr11 148035928 148036703 -2746850 - L1ME LINE L1 -420 5725 4905 235 246 62 88 chr11 148036762 148037067 -2746486 - L1ME LINE L1 -3174 2955 2659 14570 112 16 1 chr11 148037419 148039779 -2743774 - Tigger1 DNA MER2_type 0 2418 1 1289 310 78 35 chr11 148039779 148040031 -2743522 - ERVL LTR ERVL -1820 3874 3635 2191 113 0 7 chr11 148040031 148040332 -2743221 + AluSx SINE Alu 1 299 -13 1289 310 78 35 chr11 148040332 148040978 -2742575 - ERVL LTR ERVL -2059 3635 2890 1638 347 49 22 chr11 148041110 148042003 -2741550 - ERVL LTR ERVL -2986 2514 1594 2045 154 25 8 chr11 148042003 148042360 -2741193 - MLT1A1 LTR MaLR -2 363 1 1638 347 49 22 chr11 148042360 148042709 -2740844 - ERVL LTR ERVL -3906 1594 1256 291 281 211 0 chr11 148042751 148042865 -2740688 + MER5A DNA MER1_type 52 189 0 2293 72 10 23 chr11 148043393 148043700 -2739853 + AluY SINE Alu 1 303 -8 261 330 34 48 chr11 148044148 148044357 -2739196 - L1ME LINE L1 -5912 207 2 275 351 86 20 chr11 148044391 148044542 -2739011 - L2 LINE L2 0 3272 3112 2577 219 34 7 chr11 148044673 148045288 -2738265 - MER99 DNA DNA -3 825 194 25 0 0 0 chr11 148045655 148045680 -2737873 + AT_rich Low_complexity Low_complexity 1 25 0 371 204 108 0 chr11 148046001 148046094 -2737459 - MER99 DNA DNA -725 103 1 249 417 0 0 chr11 148046113 148046245 -2737308 - L2 LINE L2 -743 2571 2440 285 320 50 46 chr11 148046898 148047117 -2736436 + L2 LINE L2 2657 2876 -438 * 544 268 125 44 chr11 148047113 148047408 -2736145 + L2 LINE L2 2995 3313 0 210 176 66 11 chr11 148047540 148047631 -2735922 + (TA)n Simple_repeat Simple_repeat 1 96 0 28 0 0 0 chr11 148047779 148047807 -2735746 + AT_rich Low_complexity Low_complexity 1 28 0 227 254 0 0 chr11 148047812 148047867 -2735686 - LTR33A LTR ERVL 0 523 469 274 232 107 45 chr11 148049909 148050021 -2733532 + MIR3 SINE MIR 88 206 -2 339 214 95 12 chr11 148051086 148051170 -2732383 - MIR3 SINE MIR -24 184 94 429 20 0 0 chr11 148051582 148051632 -2731921 + (TG)n Simple_repeat Simple_repeat 2 51 0 2203 54 0 0 chr11 148051692 148051952 -2731601 + AluY SINE Alu 35 294 -17 216 326 87 11 chr11 148053079 148053171 -2730382 - L2 LINE L2 -48 3224 3126 360 0 0 0 chr11 148053249 148053289 -2730264 + (CA)n Simple_repeat Simple_repeat 2 41 0 4007 158 42 68 chr11 148053992 148054847 -2728706 + L1MEc LINE L1 34 866 -5560 401 155 0 0 chr11 148054847 148054905 -2728648 - AluJ/F(R)AM SINE Alu -119 193 136 * 670 149 0 19 chr11 148054902 148055009 -2728544 + AluJb SINE Alu 181 285 -27 3004 278 60 20 chr11 148055115 148056680 -2726873 + L1 LINE L1 2425 4052 -2094 5923 132 48 9 chr11 148056682 148057795 -2725758 + L1MC1 LINE L1 5178 6333 0 7225 45 16 1 chr11 148057806 148059235 -2724318 - L1PA5 LINE L1 0 6154 4713 2122 82 0 11 chr11 148059585 148059852 -2723701 + AluY SINE Alu 1 264 -47 247 273 35 42 chr11 148060052 148060195 -2723358 + L1MEc LINE L1 899 1040 -5376 2037 127 0 33 chr11 148060388 148060687 -2722866 + AluSx SINE Alu 1 289 -23 782 280 60 38 chr11 148060772 148061090 -2722463 + L1ME3A LINE L1 5560 5884 -278 449 262 18 143 chr11 148061517 148061796 -2721757 + L1MEc LINE L1 1268 1511 -4905 5669 189 68 4 chr11 148061839 148062934 -2720619 + L1PA13 LINE L1 1 1166 -5621 10249 217 77 8 chr11 148062939 148065400 -2718153 + L1PA13 LINE L1 2434 5064 -1733 6789 189 28 60 chr11 148065403 148067076 -2716477 + L1P4 LINE L1 10 1628 -4833 * 13896 132 15 10 chr11 148067054 148067935 -2715618 + L1P4 LINE L1 3207 4082 -2407 2410 34 41 0 chr11 148067935 148068228 -2715325 + AluY SINE Alu 1 305 -6 13896 132 15 10 chr11 148068228 148069905 -2713648 + L1P4 LINE L1 4082 5776 -713 2264 256 118 24 chr11 148070017 148070507 -2713046 - L1 LINE L1 -2456 3690 3248 3138 109 2 0 chr11 148070507 148070956 -2712597 - L1PA13 LINE L1 -13 6150 5701 2264 256 118 24 chr11 148070956 148071297 -2712256 - L1 LINE L1 -2898 3248 2941 2419 89 0 0 chr11 148071297 148071600 -2711953 + AluSx SINE Alu 2 304 -8 2264 256 118 24 chr11 148071600 148072158 -2711395 - L1 LINE L1 -3205 2941 2169 418 308 15 0 chr11 148072473 148072603 -2710950 + MIR3 SINE MIR 65 196 -12 1034 209 70 0 chr11 148073007 148073309 -2710244 + MER33 DNA MER1_type 2 324 0 228 35 0 0 chr11 148073712 148073741 -2709812 + (CA)n Simple_repeat Simple_repeat 2 30 0 1280 169 134 60 chr11 148073981 148074383 -2709170 + MSTB1 LTR MaLR 1 432 0 453 387 52 11 chr11 148074792 148075061 -2708492 + L2 LINE L2 2571 2850 -464 394 221 116 0 chr11 148075146 148075241 -2708312 - L2 LINE L2 -8 3305 3200 1138 231 27 34 chr11 148075649 148075918 -2707635 + L1MEc LINE L1 2287 2553 -4054 994 211 0 18 chr11 148075918 148076141 -2707412 - L1PA16 LINE L1 -9 6157 5939 1138 231 27 34 chr11 148076141 148076282 -2707271 + L1MEc LINE L1 2553 2694 -3913 427 153 18 42 chr11 148076282 148076573 -2706980 + (TTATA)n Simple_repeat Simple_repeat 1 283 0 244 123 53 35 chr11 148076576 148076746 -2706807 + (TATAA)n Simple_repeat Simple_repeat 2 174 0 23 54 0 0 chr11 148076746 148076783 -2706770 + AT_rich Low_complexity Low_complexity 1 37 0 417 97 98 3 chr11 148076783 148077101 -2706452 + (TA)n Simple_repeat Simple_repeat 1 348 0 545 78 72 6 chr11 148077129 148077296 -2706257 + (TA)n Simple_repeat Simple_repeat 1 178 0 2392 251 71 18 chr11 148077298 148078327 -2705226 + L1MEc LINE L1 2657 3740 -2686 887 135 15 0 chr11 148078348 148078481 -2705072 - FLAM_C SINE Alu 0 143 9 24 0 0 0 chr11 148078490 148078514 -2705039 + AT_rich Low_complexity Low_complexity 1 24 0 555 264 93 25 chr11 148078590 148078870 -2704683 + L1MEc LINE L1 3932 4230 -2196 1725 266 54 27 chr11 148078889 148079442 -2704111 - L2 LINE L2 -430 2884 2317 274 203 62 0 chr11 148079451 148079515 -2704038 + MER21B LTR ERV1 13 80 -783 1602 187 105 18 chr11 148079523 148079924 -2703629 + MER21B LTR ERV1 407 842 -21 364 253 322 0 chr11 148079945 148080119 -2703434 - L2 LINE L2 -983 2331 2102 5086 188 32 17 chr11 148080122 148080633 -2702920 + L1PA15 LINE L1 2097 2599 -3566 1679 201 0 0 chr11 148080633 148080911 -2702642 + AluJb SINE Alu 1 278 -34 1011 105 6 12 chr11 148080911 148081082 -2702471 + (GAAA)n Simple_repeat Simple_repeat 3 172 0 5086 188 32 17 chr11 148081082 148082000 -2701553 + L1PA15 LINE L1 2599 3502 -2663 2302 98 3 0 chr11 148082000 148082295 -2701258 + AluY SINE Alu 1 296 -15 5086 188 32 17 chr11 148082295 148082720 -2700833 + L1PA15 LINE L1 3502 3919 -2246 2201 136 3 0 chr11 148082720 148083028 -2700525 + AluSx SINE Alu 1 309 -3 5086 188 32 17 chr11 148083028 148085008 -2698545 + L1PA15 LINE L1 3919 6162 -3 356 224 217 35 chr11 148085043 148085186 -2698367 - MIR SINE MIR -21 241 73 533 284 91 33 chr11 148085865 148086260 -2697293 + HAL1b LINE L1 254 671 -677 186 43 0 0 chr11 148086304 148086327 -2697226 + (A)n Simple_repeat Simple_repeat 1 23 0 996 229 36 24 chr11 148086364 148086696 -2696857 + MER113 DNA MER1_type? 34 369 -152 1576 193 19 30 chr11 148086790 148087158 -2696395 + MLT1A1 LTR MaLR 1 364 -1 761 240 65 5 chr11 148087281 148087498 -2696055 - MLT1C LTR MaLR 0 467 238 2129 98 3 7 chr11 148088291 148088576 -2694977 + AluSp SINE Alu 15 298 -15 681 294 53 7 chr11 148088620 148088919 -2694634 - L1ME LINE L1 -535 5635 5323 2399 87 3 0 chr11 148089259 148089569 -2693984 - AluY SINE Alu 0 311 1 385 298 76 18 chr11 148089726 148090001 -2693552 + L1ME1 LINE L1 5382 5672 -449 3437 231 46 53 chr11 148090064 148090342 -2693211 + L1MB4 LINE L1 829 1108 -5717 2081 122 0 11 chr11 148090342 148090628 -2692925 + AluSx SINE Alu 6 288 -24 3437 231 46 53 chr11 148090628 148091059 -2692494 + L1MB4 LINE L1 1108 1541 -5284 333 0 0 0 chr11 148091059 148091096 -2692457 + (CA)n Simple_repeat Simple_repeat 2 38 0 3437 231 46 53 chr11 148091096 148092040 -2691513 + L1MB4 LINE L1 1541 2615 -4210 1901 129 0 4 chr11 148092067 148092338 -2691215 + AluSx SINE Alu 36 305 -7 3898 172 25 67 chr11 148093256 148094552 -2689001 + L1MB4 LINE L1 5404 6660 -18 2036 134 34 3 chr11 148094553 148094881 -2688672 + MER2 DNA MER2_type 7 344 -1 24 0 0 0 chr11 148094893 148094917 -2688636 + AT_rich Low_complexity Low_complexity 1 24 0 525 239 81 75 chr11 148094931 148095145 -2688408 + L1ME1 LINE L1 5802 6013 -152 207 0 0 0 chr11 148095145 148095168 -2688385 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 525 239 81 75 chr11 148095168 148095181 -2688372 + L1ME1 LINE L1 6013 6024 -141 2333 101 0 0 chr11 148095181 148095469 -2688084 - AluSg SINE Alu -22 288 1 525 239 81 75 chr11 148095469 148095586 -2687967 + L1ME1 LINE L1 6024 6152 -13 1148 167 22 0 chr11 148096066 148096288 -2687265 - L1MA7 LINE L1 -2 6289 6063 251 342 26 13 chr11 148096867 148097022 -2686531 - MIR3 SINE MIR -22 186 30 572 272 140 58 chr11 148097023 148097561 -2685992 + L2 LINE L2 2733 3311 -2 186 43 0 0 chr11 148097996 148098019 -2685534 + (TTG)n Simple_repeat Simple_repeat 2 24 0 328 374 45 7 chr11 148098122 148098277 -2685276 - MIR SINE MIR -56 206 46 2122 82 0 25 chr11 148098398 148098679 -2684874 + AluSc SINE Alu 1 274 -35 213 39 0 0 chr11 148098682 148098708 -2684845 + (GAAA)n Simple_repeat Simple_repeat 1 26 0 473 200 18 0 chr11 148098715 148098825 -2684728 + G-rich Low_complexity Low_complexity 1 112 0 2579 59 0 3 chr11 148098850 148099157 -2684396 + AluY SINE Alu 1 306 -5 595 260 26 6 chr11 148099346 148099502 -2684051 - MIR SINE MIR -47 215 58 436 290 69 82 chr11 148102083 148102400 -2681153 - L2 LINE L2 -40 3232 2920 195 310 116 9 chr11 148102593 148102825 -2680728 - L2 LINE L2 -609 2705 2449 2220 117 0 7 chr11 148103058 148103357 -2680196 + AluSq SINE Alu 1 297 -16 201 121 0 0 chr11 148103380 148103413 -2680140 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 338 223 205 54 chr11 148104891 148105057 -2678496 + MIR SINE MIR 16 206 -56 192 284 189 40 chr11 148105236 148105384 -2678169 - MIR3 SINE MIR -5 203 34 564 267 181 9 chr11 148105410 148105620 -2677933 - MIR SINE MIR -14 248 3 283 294 0 0 chr11 148106354 148106369 -2677184 + L1MC4 LINE L1 6518 6532 -1510 2143 112 30 0 chr11 148106369 148106664 -2676889 + AluSx SINE Alu 1 304 -8 283 294 0 0 chr11 148106664 148106740 -2676813 + L1MC4 LINE L1 6531 6609 -1433 325 289 185 0 chr11 148107031 148107166 -2676387 + MER5B DNA MER1_type 3 162 -16 408 306 31 21 chr11 148108274 148108447 -2675106 + MIR SINE MIR 37 212 -50 252 0 0 0 chr11 148108644 148108672 -2674881 + (TTAGGG)n Simple_repeat Simple_repeat 2 29 0 3357 246 112 12 chr11 148110887 148111917 -2671636 - L1MC4 LINE L1 -197 7845 6713 423 0 0 0 chr11 148111941 148111988 -2671565 + (CA)n Simple_repeat Simple_repeat 1 47 0 366 216 82 96 chr11 148111990 148112139 -2671414 + L1ME1 LINE L1 5942 6092 -242 2322 92 3 3 chr11 148112139 148112433 -2671120 - AluSx SINE Alu -18 294 1 366 216 82 96 chr11 148112433 148112499 -2671054 + L1ME1 LINE L1 6092 6330 -4 1331 57 109 0 chr11 148112727 148112759 -2670794 - MER107 DNA MER1_type 0 197 170 264 59 0 0 chr11 148112759 148112793 -2670760 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1331 57 109 0 chr11 148112793 148112935 -2670618 - MER107 DNA MER1_type -27 170 4 2178 114 0 0 chr11 148112967 148113272 -2670281 + AluSg SINE Alu 1 305 0 528 221 147 83 chr11 148113461 148113918 -2669635 + L1ME4a LINE L1 5613 6098 -23 639 259 74 43 chr11 148113933 148114257 -2669296 + MER46C DNA MER2_type 1 334 -4 1672 150 59 3 chr11 148114269 148114438 -2669115 - AluJo SINE Alu -10 302 109 262 0 53 0 chr11 148114438 148114476 -2669077 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1672 150 59 3 chr11 148114476 148114592 -2668961 - AluJo SINE Alu -203 109 1 203 156 44 0 chr11 148114622 148114667 -2668886 + GA-rich Low_complexity Low_complexity 2 48 0 994 300 123 8 chr11 148114756 148115266 -2668287 - MER90 LTR ERV1 0 575 7 5188 143 33 7 chr11 148116274 148117161 -2666392 - L1MC2 LINE L1 -7 6337 5428 324 218 115 11 chr11 148117161 148117248 -2666305 + MER63A DNA MER1_type 10 105 0 2588 115 0 7 chr11 148117249 148117658 -2665895 + L1MA9 LINE L1 5545 5950 -362 41540 47 5 1 chr11 148117663 148123778 -2659775 + L1PA4 LINE L1 3 6144 -11 1668 151 36 39 chr11 148123786 148124150 -2659403 + L1MA9 LINE L1 5937 6299 -13 226 167 71 36 chr11 148124150 148124234 -2659319 + L1MA9 LINE L1 6226 6312 0 573 176 25 0 chr11 148124248 148124367 -2659186 + MER63A DNA MER1_type 89 210 0 199 323 58 65 chr11 148125596 148125751 -2657802 + MIR3 SINE MIR 10 163 -45 310 289 124 21 chr11 148126429 148126593 -2656960 - MIR SINE MIR -66 142 3 2200 119 0 22 chr11 148127119 148127439 -2656114 + AluSq SINE Alu 1 313 0 392 299 66 46 chr11 148128090 148128287 -2655266 - L2 LINE L2 0 3313 3113 282 278 113 0 chr11 148128357 148128504 -2655049 - MIR SINE MIR -65 143 20 333 214 57 14 chr11 148130218 148130288 -2653265 - AluJo SINE Alu -13 289 217 990 139 0 0 chr11 148130288 148130425 -2653128 - AluJo SINE Alu -175 137 1 321 285 73 0 chr11 148130425 148130562 -2652991 - L1MC/D LINE L1 -2029 5779 5633 318 225 135 0 chr11 148130566 148130655 -2652898 - L1MC/D LINE L1 -2364 5444 5344 349 214 57 0 chr11 148131722 148131792 -2651761 - AluSp/q SINE Alu -13 290 217 990 139 0 0 chr11 148131792 148131929 -2651624 - AluJo SINE Alu -175 137 1 309 274 47 0 chr11 148131929 148132035 -2651518 - L1MC/D LINE L1 -2029 5779 5669 318 225 135 0 chr11 148132069 148132158 -2651395 - L1MC/D LINE L1 -2364 5444 5344 837 133 0 0 chr11 148132912 148133047 -2650506 + (ATG)n Simple_repeat Simple_repeat 2 136 0 362 324 118 7 chr11 148133562 148133698 -2649855 - MIR SINE MIR -78 184 34 356 248 46 9 chr11 148134225 148134334 -2649219 + MER63 DNA MER1_type 1 739 -323 183 293 66 28 chr11 148134662 148134768 -2648785 + L2 LINE L2 2657 2766 -548 435 323 16 0 chr11 148134778 148134905 -2648648 + L2 LINE L2 3181 3309 -4 198 203 0 51 chr11 148136280 148136339 -2647214 + L3 LINE CR1 948 1003 -574 244 345 52 9 chr11 148136357 148136473 -2647080 + L3b LINE CR1 1279 1399 -184 402 321 103 55 chr11 148136983 148137629 -2645924 - L2 LINE L2 -1 3271 2598 433 282 21 14 chr11 148139162 148139304 -2644249 + L2 LINE L2 3171 3313 0 220 325 159 22 chr11 148140356 148140627 -2642926 + L2 LINE L2 2563 2870 -444 283 274 19 28 chr11 148141442 148141548 -2642005 - MIR3 SINE MIR -27 181 77 5882 186 64 14 chr11 148142457 148142659 -2640894 + Charlie1a DNA MER1_type 3 193 -2568 2008 132 139 13 chr11 148142659 148143039 -2640514 + MSTA LTR MaLR 1 428 0 5882 186 64 14 chr11 148143039 148144124 -2639429 + Charlie1a DNA MER1_type 193 1355 -100 219 296 124 52 chr11 148144156 148144389 -2639164 + L2 LINE L2 2705 2954 -360 25 0 0 0 chr11 148144812 148144837 -2638716 + AT_rich Low_complexity Low_complexity 1 25 0 434 325 160 0 chr11 148145399 148145599 -2637954 - Charlie8 DNA MER1_type -2185 232 1 2505 201 23 11 chr11 148146524 148147046 -2636507 + L1MB5 LINE L1 5647 6174 0 741 244 29 0 chr11 148147073 148147278 -2636275 + MIR SINE MIR 42 252 -10 2092 237 108 39 chr11 148147918 148148654 -2634899 - L1MC4a LINE L1 -868 5429 5369 1489 139 8 8 chr11 148148654 148148891 -2634662 - AluSq SINE Alu -22 291 55 2092 237 108 39 chr11 148148891 148149000 -2634553 - L1MC4a LINE L1 -928 5369 5269 2155 116 3 55 chr11 148149032 148149359 -2634194 - AluSg SINE Alu 0 310 1 21 0 0 0 chr11 148149571 148149592 -2633961 + AT_rich Low_complexity Low_complexity 1 21 0 1327 157 5 0 chr11 148150969 148151179 -2632374 + AluSx SINE Alu 2 212 -100 472 51 0 0 chr11 148151179 148151238 -2632315 + AluSq/x SINE Alu 78 136 -176 2442 82 3 0 chr11 148151239 148151545 -2632008 + AluSx SINE Alu 3 309 -3 186 329 118 13 chr11 148151976 148152052 -2631501 + L2 LINE L2 3149 3232 -40 229 247 59 24 chr11 148152087 148152172 -2631381 - Charlie7 DNA MER1_type -7 2605 2518 2131 97 14 0 chr11 148152181 148152460 -2631093 + AluSc SINE Alu 1 283 -26 213 219 0 0 chr11 148152467 148152508 -2631045 + GA-rich Low_complexity Low_complexity 5 45 0 285 206 0 16 chr11 148152564 148152627 -2630926 - Charlie7 DNA MER1_type -2508 104 43 290 313 26 33 chr11 148153488 148153648 -2629905 + MER5B DNA MER1_type 23 169 -9 2160 113 13 7 chr11 148154424 148154726 -2628827 - AluSx SINE Alu -8 304 1 877 175 7 0 chr11 148154726 148154880 -2628673 - L1PA16 LINE L1 -11 6155 6001 204 277 74 61 chr11 148154886 148155034 -2628519 + L2 LINE L2 3159 3308 -5 711 282 65 2 chr11 148155113 148155331 -2628222 - MIR SINE MIR -30 232 4 1032 156 12 0 chr11 148156638 148156805 -2626748 + AluJb SINE Alu 140 308 -4 394 324 123 6 chr11 148157920 148158090 -2625463 + MIR SINE MIR 20 209 -53 189 279 0 0 chr11 148158347 148158390 -2625163 - L2 LINE L2 -8 3264 3222 1284 223 84 49 chr11 148158517 148158872 -2624681 + L1ME2 LINE L1 5710 6084 -80 822 213 43 29 chr11 148158872 148159079 -2624474 - MER63A DNA MER1_type 0 210 1 1284 223 84 49 chr11 148159079 148159153 -2624400 + L1ME2 LINE L1 6084 6154 -10 22 35 0 0 chr11 148159456 148159485 -2624068 + AT_rich Low_complexity Low_complexity 1 29 0 1614 172 57 7 chr11 148159494 148159773 -2623780 + AluJo SINE Alu 1 293 -19 2026 223 81 48 chr11 148159814 148160413 -2623140 - L1MD2 LINE L1 -219 6140 5562 2214 71 0 0 chr11 148160413 148160679 -2622874 + AluY SINE Alu 37 302 -9 14931 87 7 1 chr11 148160686 148163550 -2620003 + L1PA7 LINE L1 3262 6154 0 2026 223 81 48 chr11 148163550 148164483 -2619070 - L1MD2 LINE L1 -802 5557 4454 2466 68 3 0 chr11 148164577 148164872 -2618681 - AluY SINE Alu -15 296 1 2310 133 22 11 chr11 148164873 148165233 -2618320 + MLT2D LTR ERVL 3 366 -48 216 0 0 0 chr11 148165254 148165278 -2618275 + (CA)n Simple_repeat Simple_repeat 2 25 0 283 184 0 0 chr11 148165308 148165357 -2618196 + MLT2D LTR ERVL 464 512 -8 414 267 15 30 chr11 148165359 148165490 -2618063 - L1MD2 LINE L1 -1801 4345 4217 811 217 48 0 chr11 148165951 148166117 -2617436 + FAM SINE Alu 1 174 -1 1762 244 36 33 chr11 148167641 148168161 -2615392 - L1ME3A LINE L1 -23 6147 5626 1924 147 3 25 chr11 148169092 148169411 -2614142 + AluJb SINE Alu 1 312 0 262 378 33 6 chr11 148169430 148169610 -2613943 + MIR SINE MIR 73 257 -5 2506 193 31 4 chr11 148169762 148170285 -2613268 + L1PBa LINE L1 6 542 -6321 4816 159 32 6 chr11 148170346 148171696 -2611857 + L1PBa LINE L1 640 2211 -4652 3538 107 0 30 chr11 148171696 148172172 -2611381 + L1PB1 LINE L1 5632 6092 -59 2413 86 0 3 chr11 148172172 148172475 -2611078 + AluY SINE Alu 1 302 -9 3538 107 0 30 chr11 148172475 148172531 -2611022 + L1PB1 LINE L1 6092 6148 -3 2347 106 0 0 chr11 148172555 148172857 -2610696 + AluSx SINE Alu 1 302 -10 2506 74 3 0 chr11 148172857 148173167 -2610386 + AluY SINE Alu 1 311 0 1545 194 66 31 chr11 148174021 148174474 -2609079 + L1MEc LINE L1 767 1235 -5161 225 313 65 14 chr11 148174724 148174938 -2608615 + L1M4 LINE L1 3792 4016 -2130 2138 246 58 15 chr11 148174939 148176113 -2607440 + L1MEc LINE L1 35 1347 -5049 343 141 14 0 chr11 148176113 148176184 -2607369 - MLT2B1 LTR ERVL 0 520 449 30 27 0 0 chr11 148176185 148176222 -2607331 + AT_rich Low_complexity Low_complexity 1 37 0 731 154 8 54 chr11 148176321 148176451 -2607102 - MLT2B1 LTR ERVL -40 480 357 788 216 57 5 chr11 148176469 148176555 -2606998 - Ricksha DNA DNA -1602 444 349 16306 155 63 24 chr11 148176555 148176757 -2606796 - ERVL LTR ERVL -1 5763 5570 1969 144 0 3 chr11 148176757 148177048 -2606505 + AluJb SINE Alu 3 292 -20 16306 155 63 24 chr11 148177048 148179721 -2603832 - ERVL LTR ERVL -194 5570 2778 308 269 100 0 chr11 148179769 148179899 -2603654 + L1MCa LINE L1 1495 1637 -4905 2224 112 3 13 chr11 148179901 148180206 -2603347 + AluSq SINE Alu 1 302 -11 2843 177 54 24 chr11 148180206 148180366 -2603187 + L1MC1 LINE L1 826 980 -5446 1974 107 46 0 chr11 148180366 148180647 -2602906 + AluSx SINE Alu 1 294 -18 2843 177 54 24 chr11 148180647 148181119 -2602434 + L1MC1 LINE L1 980 1477 -4949 1710 181 43 21 chr11 148181115 148181327 -2602226 - L1 LINE L1 -870 5276 5051 * 1927 156 10 3 chr11 148181327 148181634 -2601919 - AluSx SINE Alu -3 309 1 1710 181 43 21 chr11 148181634 148181796 -2601757 - L1 LINE L1 -1095 5051 4894 6381 199 37 26 chr11 148181796 148182622 -2600931 + L1MC1 LINE L1 3757 4572 -2041 2430 81 7 0 chr11 148182622 148182920 -2600633 - AluSg SINE Alu -10 300 1 6381 199 37 26 chr11 148182920 148184876 -2598677 + L1MC1 LINE L1 4572 6571 -42 304 271 0 25 chr11 148184990 148185112 -2598441 + L1MCa LINE L1 2586 2704 -4121 1117 130 27 11 chr11 148185806 148185991 -2597562 - MER61E LTR ERV1 -43 526 339 238 260 0 20 chr11 148186035 148186085 -2597468 - MER61E LTR ERV1 -404 165 117 234 229 73 94 chr11 148186061 148186157 -2597396 - MER61E LTR ERV1 -379 190 97 * 446 169 26 0 chr11 148186158 148186235 -2597318 - LTR25 LTR ERV1 -438 356 278 3426 215 9 23 chr11 148186446 148187238 -2596315 - MER61E-int LTR ERV1 -2 6994 6214 * 12312 162 47 34 chr11 148187236 148187637 -2595916 - MER61E-int LTR ERV1 -1609 5387 4993 2087 113 58 0 chr11 148187637 148187928 -2595625 - AluSx SINE Alu -4 308 1 12312 162 47 34 chr11 148187928 148188773 -2594780 - MER61E-int LTR ERV1 -2003 4993 4161 6126 47 9 0 chr11 148188773 148189512 -2594041 + L1PA5 LINE L1 5407 6152 -2 12312 162 47 34 chr11 148189512 148190906 -2592647 - MER61E-int LTR ERV1 -2835 4161 2710 2166 135 0 0 chr11 148190919 148191215 -2592338 + AluSx SINE Alu 1 296 -16 865 231 36 4 chr11 148191222 148191470 -2592083 - MER61E-int LTR ERV1 -4569 2522 2169 405 186 98 20 chr11 148191499 148191601 -2591952 - MER61E-int LTR ERV1 -5571 1520 1411 * 2009 235 28 18 chr11 148191594 148192435 -2591118 - LTR25-int LTR ERV1 -5384 1612 707 1885 114 158 9 chr11 148192438 148192755 -2590798 - THE1B LTR MaLR 0 364 1 3316 102 0 30 chr11 148192755 148193224 -2590329 - THE1B-int LTR MaLR 0 1580 1126 684 256 6 0 chr11 148193298 148193478 -2590075 - L1M4 LINE L1 -1545 4601 4421 617 243 30 105 chr11 148193475 148193874 -2589679 - L1MC5 LINE L1 -743 7218 6850 * 314 336 59 0 chr11 148194048 148194167 -2589386 - LTR16C LTR ERVL -197 294 169 216 0 0 0 chr11 148194653 148194677 -2588876 + (T)n Simple_repeat Simple_repeat 1 24 0 31 0 0 0 chr11 148195472 148195503 -2588050 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr11 148195808 148195838 -2587715 + AT_rich Low_complexity Low_complexity 1 30 0 1332 170 0 5 chr11 148196091 148196309 -2587244 - Tigger5 DNA MER2_type 0 2323 2107 1979 137 10 13 chr11 148196379 148196678 -2586875 + AluSx SINE Alu 1 298 -14 2726 241 23 5 chr11 148196820 148197567 -2585986 + L1M4 LINE L1 2627 3390 -2756 1128 188 80 111 chr11 148197567 148197944 -2585609 + MLT1A1 LTR MaLR 1 365 0 2726 241 23 5 chr11 148197944 148197993 -2585560 + L1M4 LINE L1 3390 3437 -2709 2539 138 40 11 chr11 148198028 148198476 -2585077 + L1MB4 LINE L1 5712 6172 -8 1812 145 47 27 chr11 148198573 148198870 -2584683 - AluJo SINE Alu 0 312 10 193 246 33 19 chr11 148199014 148199084 -2584469 - MIR SINE MIR -80 128 52 902 249 90 97 chr11 148200254 148200632 -2582921 - MLT1J LTR MaLR -7 504 125 2006 138 131 18 chr11 148200632 148201015 -2582538 - MSTA LTR MaLR 0 428 3 9486 135 30 33 chr11 148201018 148202601 -2580952 - MSTA-int LTR MaLR 0 1580 3 1958 160 134 11 chr11 148202603 148202984 -2580569 - MSTA LTR MaLR 0 428 1 902 249 90 97 chr11 148202984 148203020 -2580533 - MLT1J LTR MaLR -389 122 86 753 161 0 23 chr11 148203721 148203851 -2579702 + FLAM_C SINE Alu 3 129 -4 16254 194 56 26 chr11 148203861 148207901 -2575652 + L1PB2 LINE L1 1 3918 -2944 2209 114 0 3 chr11 148207901 148208198 -2575355 + AluSq SINE Alu 4 299 -14 1606 141 12 8 chr11 148208208 148208449 -2575104 + AluSg SINE Alu 1 242 -68 4983 58 1 130 chr11 148208451 148209241 -2574312 - LTR12 LTR ERV1 0 688 1 377 103 0 0 chr11 148209241 148209299 -2574254 + AluSg SINE Alu 241 298 -2 16254 194 56 26 chr11 148209299 148209593 -2573960 + L1PB2 LINE L1 3925 4496 -2366 13622 197 40 21 chr11 148209617 148215217 -2568336 + L1PB1 LINE L1 6 5500 -1367 2289 103 3 0 chr11 148215217 148215517 -2568036 + AluSq SINE Alu 1 301 -12 13622 197 40 21 chr11 148215517 148216054 -2567499 + L1PB1 LINE L1 5500 6025 -842 399 113 0 0 chr11 148216054 148216116 -2567437 + (TG)n Simple_repeat Simple_repeat 1 62 0 13622 197 40 21 chr11 148216116 148216466 -2567087 + L1PB1 LINE L1 6025 6867 0 5913 157 22 64 chr11 148216474 148218788 -2564765 + L1PB2 LINE L1 4493 6903 36 2178 93 21 7 chr11 148218788 148219079 -2564474 + AluSc SINE Alu 1 295 -14 186 43 0 0 chr11 148219079 148219102 -2564451 + (TA)n Simple_repeat Simple_repeat 1 23 0 5913 157 22 64 chr11 148219102 148219274 -2564279 + L1PB2 LINE L1 6682 6860 -7 934 196 12 0 chr11 148219278 148219441 -2564112 + AluJb SINE Alu 121 285 -27 2183 112 10 0 chr11 148219548 148219853 -2563700 + AluSp SINE Alu 2 309 -4 3538 124 105 45 chr11 148220646 148221710 -2561843 - LTR12 LTR ERV1 0 2427 1 232 204 74 0 chr11 148221795 148221849 -2561704 + L2 LINE L2 3211 3268 -45 183 42 0 0 chr11 148221892 148221916 -2561637 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 219 146 0 0 chr11 148222351 148222392 -2561161 + (CGGGG)n Simple_repeat Simple_repeat 2 42 0 2655 41 0 25 chr11 148223302 148223618 -2559935 - AluY SINE Alu -3 308 1 298 314 51 0 chr11 148225047 148225165 -2558388 - MIR SINE MIR -109 153 30 201 365 0 29 chr11 148225328 148225432 -2558121 - MIR3 SINE MIR -4 204 104 544 232 47 58 chr11 148225842 148226032 -2557521 - MLT1J LTR MaLR -19 492 305 293 60 60 0 chr11 148226081 148226131 -2557422 + T-rich Low_complexity Low_complexity 5 57 0 204 114 0 29 chr11 148226131 148226166 -2557387 + (TC)n Simple_repeat Simple_repeat 2 35 0 1861 91 8 4 chr11 148226183 148226426 -2557127 - AluSg SINE Alu -66 244 1 23 0 0 0 chr11 148226434 148226457 -2557096 + AT_rich Low_complexity Low_complexity 1 23 0 344 274 28 54 chr11 148226460 148226604 -2556949 - MLT1J LTR MaLR -335 176 68 2334 97 0 7 chr11 148226604 148226913 -2556640 + AluSq SINE Alu 1 307 -6 344 274 28 54 chr11 148226913 148226980 -2556573 - MLT1J LTR MaLR -443 68 1 267 318 19 19 chr11 148227078 148227232 -2556321 - MER5A DNA MER1_type -35 154 1 638 256 91 39 chr11 148227409 148227717 -2555836 - HAL1 LINE L1 -111 2396 2073 249 136 0 0 chr11 148227967 148228011 -2555542 + MER69 DNA AcHobo 2384 2427 -99 481 173 10 48 chr11 148228038 148228142 -2555411 + MER69 DNA AcHobo 2411 2510 -16 1345 223 99 99 chr11 148228151 148228966 -2554587 - HAL1 LINE L1 -845 1662 848 2511 79 0 0 chr11 148229411 148229714 -2553839 - AluSg SINE Alu -7 303 1 306 305 48 0 chr11 148230015 148230120 -2553433 + L2 LINE L2 3153 3262 -10 242 292 177 8 chr11 148231385 148231515 -2552038 - L2 LINE L2 -188 3084 2933 547 253 42 80 chr11 148231865 148232177 -2551376 - L2 LINE L2 -829 2485 2186 453 328 13 6 chr11 148232778 148232844 -2550709 - MIR3 SINE MIR -16 192 128 2545 64 0 0 chr11 148232844 148233155 -2550398 + AluY SINE Alu 1 311 0 453 328 13 6 chr11 148233155 148233259 -2550294 - MIR3 SINE MIR -80 128 20 829 218 0 5 chr11 148233291 148233493 -2550060 - AluY SINE Alu -5 306 106 180 111 0 0 chr11 148233601 148233628 -2549925 + (T)n Simple_repeat Simple_repeat 1 27 0 239 299 0 13 chr11 148233642 148233719 -2549834 + T-rich Low_complexity Low_complexity 5 80 0 2199 76 41 7 chr11 148233954 148234245 -2549308 - AluY SINE Alu -10 301 1 1070 124 43 198 chr11 148234445 148234768 -2548785 - Tigger3(Golem) DNA MER2_type -2 3027 2755 2255 98 7 0 chr11 148234771 148235067 -2548486 + AluSp SINE Alu 1 298 -15 1181 147 0 0 chr11 148235068 148235238 -2548315 + AluSg/x SINE Alu 132 301 -11 502 182 0 0 chr11 148235238 148235315 -2548238 - Tigger3(Golem) DNA MER2_type -2952 77 1 417 277 63 19 chr11 148236293 148236452 -2547101 - MIR SINE MIR -76 186 21 254 309 81 27 chr11 148236840 148236989 -2546564 + L2 LINE L2 2924 3080 -192 2643 136 98 22 chr11 148237158 148237298 -2546255 + L1MB7 LINE L1 4865 4993 -1191 2026 134 14 3 chr11 148237298 148237588 -2545965 + AluSq SINE Alu 1 293 -20 2643 136 98 22 chr11 148237588 148238197 -2545356 + L1MB7 LINE L1 4993 5679 -505 2514 207 112 28 chr11 148238197 148238873 -2544680 - MER44D DNA MER2_type 0 605 1 2643 136 98 22 chr11 148238873 148239036 -2544517 + L1MB7 LINE L1 5679 5828 -356 2405 94 0 3 chr11 148239036 148239345 -2544208 + AluSx SINE Alu 1 308 -4 265 289 22 0 chr11 148239539 148239629 -2543924 - MER20 DNA MER1_type 0 219 128 820 200 51 5 chr11 148239629 148239824 -2543729 - L1MB7 LINE L1 -205 5979 5776 1497 127 71 8 chr11 148239831 148240143 -2543410 - MLT1B LTR MaLR -9 381 1 5213 168 33 158 chr11 148240145 148240486 -2543067 - MLT1B-int LTR MaLR -2 1369 987 2114 126 0 7 chr11 148240486 148240787 -2542766 - AluSq SINE Alu -14 299 1 5213 168 33 158 chr11 148240787 148241782 -2541771 - MLT1B-int LTR MaLR -384 987 -131 2234 129 0 0 chr11 148241782 148242093 -2541460 - AluSx SINE Alu -1 311 1 5213 168 33 158 chr11 148242093 148242175 -2541378 - MLT1B-int LTR MaLR -1502 4294967165 160 2322 88 7 0 chr11 148242175 148242471 -2541082 - AluSx SINE Alu -14 298 1 5213 168 33 158 chr11 148242471 148242615 -2540938 - MLT1B-int LTR MaLR -1210 161 1 2016 165 7 47 chr11 148242615 148242834 -2540719 - MLT1B LTR MaLR 0 390 193 2232 89 0 0 chr11 148242834 148243127 -2540426 - AluSq SINE Alu -20 293 1 2016 165 7 47 chr11 148243127 148243312 -2540241 - MLT1B LTR MaLR -197 193 2 2029 119 3 3 chr11 148243358 148243668 -2539885 - AluSx SINE Alu 0 312 3 1343 203 44 78 chr11 148243886 148244246 -2539307 - L1MB7 LINE L1 -18 6166 5819 2202 92 0 0 chr11 148244246 148244540 -2539013 - AluY SINE Alu -15 296 3 180 0 0 0 chr11 148244544 148244564 -2538989 + (T)n Simple_repeat Simple_repeat 1 20 0 852 254 35 4 chr11 148244873 148245101 -2538452 - MLT-int LTR MaLR -1010 725 491 2173 103 3 6 chr11 148245102 148245414 -2538139 - AluSq SINE Alu 0 313 3 472 51 0 0 chr11 148245415 148245474 -2538079 - AluSq/x SINE Alu -176 136 78 1235 162 5 0 chr11 148245474 148245684 -2537869 - AluSx SINE Alu -100 212 2 21 0 0 0 chr11 148247061 148247082 -2536471 + AT_rich Low_complexity Low_complexity 1 21 0 2285 73 3 13 chr11 148247293 148247606 -2535947 + AluY SINE Alu 1 310 -1 1366 210 69 31 chr11 148248460 148248912 -2534641 + L1MEc LINE L1 767 1235 -5161 452 308 65 14 chr11 148249162 148249376 -2534177 + L1M4 LINE L1 3792 4016 -2130 2148 247 57 14 chr11 148249377 148250551 -2533002 + L1MEc LINE L1 35 1347 -5049 333 141 14 0 chr11 148250551 148250622 -2532931 - MLT2B1 LTR ERVL 0 520 449 30 27 0 0 chr11 148250623 148250660 -2532893 + AT_rich Low_complexity Low_complexity 1 37 0 728 154 8 54 chr11 148250759 148250889 -2532664 - MLT2B1 LTR ERVL -40 480 357 783 216 57 5 chr11 148250907 148250993 -2532560 - Ricksha DNA DNA -1602 444 349 6158 148 57 35 chr11 148250993 148251195 -2532358 - ERVL LTR ERVL -1 5763 5567 1851 144 0 3 chr11 148251195 148251486 -2532067 + AluJb SINE Alu 3 292 -20 6158 148 57 35 chr11 148251486 148252399 -2531154 - ERVL LTR ERVL -197 5567 4623 5883 142 20 10 chr11 148252499 148253720 -2529833 + L1PB2 LINE L1 4739 5947 -204 2044 93 21 7 chr11 148253720 148254010 -2529543 + AluSc SINE Alu 1 294 -15 393 75 0 0 chr11 148254010 148254063 -2529490 + (TA)n Simple_repeat Simple_repeat 2 54 0 5883 142 20 10 chr11 148254063 148254235 -2529318 + L1PB2 LINE L1 5946 6144 -7 870 190 12 0 chr11 148254239 148254402 -2529151 + AluJo SINE Alu 121 285 -27 2043 115 10 0 chr11 148254511 148254816 -2528737 + AluSp SINE Alu 2 309 -4 3581 124 105 45 chr11 148255609 148256673 -2526880 - LTR12 LTR ERV1 0 2427 1 253 204 74 0 chr11 148256758 148256812 -2526741 + L2 LINE L2 3211 3268 -45 183 42 0 0 chr11 148256855 148256879 -2526674 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 252 122 0 0 chr11 148257314 148257355 -2526198 + (CGGGG)n Simple_repeat Simple_repeat 2 42 0 2459 41 3 29 chr11 148258265 148258580 -2524973 - AluY SINE Alu -4 307 1 344 314 51 0 chr11 148260009 148260127 -2523426 - MIR SINE MIR -109 153 30 229 374 0 28 chr11 148260290 148260397 -2523156 - MIR3 SINE MIR -4 204 101 185 135 135 0 chr11 148260717 148260754 -2522799 + L2 LINE L2 3214 3255 -17 548 236 42 58 chr11 148260804 148260995 -2522558 - MLT1J LTR MaLR -19 492 305 293 60 60 0 chr11 148261044 148261094 -2522459 + T-rich Low_complexity Low_complexity 5 57 0 204 114 0 29 chr11 148261094 148261129 -2522424 + (TC)n Simple_repeat Simple_repeat 2 35 0 1891 82 4 0 chr11 148261146 148261389 -2522164 - AluSg SINE Alu -66 244 1 271 250 22 125 chr11 148261415 148261582 -2521971 - MLT1L LTR MaLR -335 176 73 2128 89 0 7 chr11 148261582 148261875 -2521678 + AluSq SINE Alu 17 307 -6 271 250 22 125 chr11 148261875 148261942 -2521611 - MLT1L LTR MaLR -438 73 1 321 318 19 19 chr11 148262040 148262194 -2521359 - MER5A DNA MER1_type -35 154 1 708 250 91 39 chr11 148262371 148262679 -2520874 - HAL1 LINE L1 -111 2396 2073 245 136 0 0 chr11 148262926 148262970 -2520583 + MER69 DNA AcHobo 2384 2427 -99 476 173 10 48 chr11 148262997 148263101 -2520452 + MER69 DNA AcHobo 2411 2510 -16 1376 226 98 98 chr11 148263110 148263925 -2519628 - HAL1 LINE L1 -845 1662 848 2380 79 0 0 chr11 148264369 148264672 -2518881 - AluSg SINE Alu -7 303 1 345 309 45 0 chr11 148264973 148265083 -2518470 + L2 LINE L2 3153 3267 -5 280 292 177 8 chr11 148266343 148266473 -2517080 - L2 LINE L2 -188 3084 2933 649 264 52 77 chr11 148266771 148267135 -2516418 - L2 LINE L2 -774 2540 2186 181 318 15 15 chr11 148267735 148267801 -2515752 - MIR3 SINE MIR -16 192 127 1461 169 7 3 chr11 148267801 148268103 -2515450 + AluY SINE Alu 1 303 -8 310 232 21 53 chr11 148268217 148268312 -2515241 - MIR SINE MIR -94 114 23 2312 58 41 0 chr11 148268345 148268638 -2514915 - AluY SINE Alu -6 305 1 1095 127 40 198 chr11 148268838 148269162 -2514391 - Tigger3(Golem) DNA MER2_type -2 3027 2755 2128 98 7 0 chr11 148269165 148269461 -2514092 + AluSp SINE Alu 1 298 -15 1118 147 0 0 chr11 148269462 148269632 -2513921 + AluSg/x SINE Alu 132 301 -11 502 182 0 0 chr11 148269632 148269709 -2513844 - Tigger3(Golem) DNA MER2_type -2952 77 1 496 284 153 27 chr11 148270640 148270862 -2512691 - MIR SINE MIR -10 252 3 292 316 79 26 chr11 148271234 148271386 -2512167 + L2 LINE L2 2924 3083 -189 3880 152 79 47 chr11 148271552 148271692 -2511861 + L1MB7 LINE L1 4865 4999 -1185 1937 135 14 0 chr11 148271692 148271981 -2511572 + AluSq SINE Alu 1 293 -20 3880 152 79 47 chr11 148271981 148272590 -2510963 + L1MB7 LINE L1 4999 5587 -597 2471 209 112 28 chr11 148272590 148273266 -2510287 - MER44D DNA MER2_type 0 605 1 3880 152 79 47 chr11 148273266 148273429 -2510124 + L1MB7 LINE L1 5587 5743 -441 2184 113 0 0 chr11 148273429 148273730 -2509823 + AluSg SINE Alu 1 301 -9 2128 99 0 0 chr11 148273734 148274028 -2509525 + AluY SINE Alu 3 296 -15 3880 152 79 47 chr11 148274028 148274388 -2509165 + L1MB7 LINE L1 5745 6166 -18 2242 97 7 0 chr11 148274603 148274913 -2508640 + AluSx SINE Alu 1 312 0 2230 159 13 33 chr11 148274959 148275136 -2508417 + MLT1B LTR MaLR 2 181 -209 2232 89 0 0 chr11 148275136 148275429 -2508124 + AluSq SINE Alu 1 293 -20 2230 159 13 33 chr11 148275429 148275648 -2507905 + MLT1B LTR MaLR 181 390 0 5230 169 33 158 chr11 148275648 148275792 -2507761 + MLT1B-int LTR MaLR 1 161 -1210 2291 87 0 0 chr11 148275792 148276090 -2507463 + AluSx SINE Alu 1 298 -14 5230 169 33 158 chr11 148276090 148276172 -2507381 + MLT1B-int LTR MaLR 161 252 -1119 2126 128 0 0 chr11 148276172 148276484 -2507069 + AluSx SINE Alu 1 312 0 5230 169 33 158 chr11 148276484 148277479 -2506074 + MLT1B-int LTR MaLR 252 987 -384 1999 133 0 0 chr11 148277479 148277780 -2505773 + AluSq SINE Alu 1 301 -12 5230 169 33 158 chr11 148277780 148278121 -2505432 + MLT1B-int LTR MaLR 987 1369 -2 1498 127 71 8 chr11 148278123 148278435 -2505118 + MLT1B LTR MaLR 1 381 -9 822 200 51 5 chr11 148278442 148278637 -2504916 + L1MB7 LINE L1 5776 5979 -205 303 278 22 0 chr11 148278637 148278727 -2504826 + MER20 DNA MER1_type 128 219 0 2074 120 0 3 chr11 148278921 148279230 -2504323 - AluSx SINE Alu -4 308 1 1004 112 176 43 chr11 148279230 148279417 -2504136 - AluJb SINE Alu -16 296 85 2168 114 0 0 chr11 148279417 148279725 -2503828 - AluSx SINE Alu -4 308 1 456 262 28 14 chr11 148279860 148280005 -2503548 - MER20 DNA MER1_type 0 219 73 232 152 0 0 chr11 148280104 148280150 -2503403 - Alu SINE Alu 0 303 258 314 301 65 41 chr11 148280152 148280275 -2503278 - L1MC4a LINE L1 -1921 5887 5762 219 167 0 0 chr11 148280757 148280799 -2502754 + GA-rich Low_complexity Low_complexity 3 44 0 1642 142 17 40 chr11 148281176 148281478 -2502075 - AluJb SINE Alu -17 295 1 2095 92 25 7 chr11 148282243 148282527 -2501026 + AluSq SINE Alu 1 289 -24 216 0 0 0 chr11 148282589 148282613 -2500940 + (A)n Simple_repeat Simple_repeat 1 24 0 304 282 64 21 chr11 148282629 148282817 -2500736 + L1M4b LINE L1 59 254 -6605 327 305 103 49 chr11 148282949 148283152 -2500401 + L1M4b LINE L1 1137 1350 -5597 2237 91 0 19 chr11 148283222 148283540 -2500013 - AluSx SINE Alu 0 312 1 1105 253 87 22 chr11 148283540 148283991 -2499562 + L1M4b LINE L1 1513 1992 -4863 3042 183 14 13 chr11 148283991 148284625 -2498928 + L1MA9 LINE L1 4695 5329 -817 1798 103 4 19 chr11 148284625 148284887 -2498666 - AluSx SINE Alu -54 258 1 369 237 79 9 chr11 148284900 148285014 -2498539 - L1MCc LINE L1 -6269 154 33 5665 138 16 37 chr11 148285258 148286047 -2497506 + L1MA9 LINE L1 5317 6081 -231 1595 180 3 7 chr11 148286047 148286336 -2497217 + AluJo SINE Alu 1 288 -24 5665 138 16 37 chr11 148286336 148286564 -2496989 + L1MA9 LINE L1 6081 6312 0 370 247 12 77 chr11 148286558 148286728 -2496825 + L1M4b LINE L1 2445 2603 -4535 * 336 48 0 0 chr11 148286902 148286944 -2496609 + (TG)n Simple_repeat Simple_repeat 1 42 0 285 29 0 0 chr11 148286980 148287014 -2496539 + (TG)n Simple_repeat Simple_repeat 1 34 0 449 268 44 63 chr11 148287020 148287382 -2496171 + L1M4b LINE L1 2690 3044 -4094 314 249 83 122 chr11 148287379 148287828 -2495725 + HAL1 LINE L1 1640 2070 -437 * 1838 136 10 3 chr11 148287828 148288122 -2495431 + AluSx SINE Alu 1 296 -16 314 249 83 122 chr11 148288122 148288165 -2495388 + HAL1 LINE L1 2070 2113 -394 958 291 125 29 chr11 148288165 148288719 -2494834 - L2 LINE L2 0 3313 2706 322 47 0 0 chr11 148288824 148288867 -2494686 + MADE1 DNA Mariner 1 43 -37 443 206 96 37 chr11 148288891 148289027 -2494526 + HAL1 LINE L1 2341 2484 -23 5398 44 48 8 chr11 148289050 148290168 -2493385 - SVA Other Other -955 1385 29 1261 176 164 37 chr11 148290336 148290660 -2492893 - MLT1A1 LTR MaLR 0 365 1 5968 194 132 76 chr11 148290660 148291785 -2491768 - MLT1A1-int LTR MaLR 0 1735 496 2214 95 0 6 chr11 148291785 148292100 -2491453 - AluSq SINE Alu 0 313 1 5968 194 132 76 chr11 148292100 148292624 -2490929 - MLT1A1-int LTR MaLR -1239 496 3 898 184 154 90 chr11 148292625 148292897 -2490656 - MLT1A1 LTR MaLR 0 365 65 2477 74 0 0 chr11 148292897 148293208 -2490345 + AluSx SINE Alu 1 311 -1 898 184 154 90 chr11 148293208 148293278 -2490275 - MLT1A1 LTR MaLR -300 65 1 315 280 118 11 chr11 148293601 148293694 -2489859 - L1M LINE L1 -2432 5376 5274 312 282 68 34 chr11 148295266 148295383 -2488170 - L2 LINE L2 -4 3309 3189 1914 119 17 7 chr11 148297865 148298158 -2485395 - AluSx SINE Alu -14 298 3 2484 63 0 0 chr11 148298205 148298507 -2485046 - AluY SINE Alu -9 302 1 1889 137 7 3 chr11 148298507 148298799 -2484754 - AluSg SINE Alu -17 293 1 604 268 65 6 chr11 148299588 148299756 -2483797 - MIR SINE MIR -22 240 63 276 122 0 0 chr11 148299863 148299904 -2483649 + MADE1 DNA Mariner 1 41 -39 2080 82 4 0 chr11 148301205 148301474 -2482079 + AluY SINE Alu 20 289 -22 187 239 22 0 chr11 148301484 148301530 -2482023 - L2 LINE L2 -5 3308 3262 2238 85 0 7 chr11 148301948 148302243 -2481310 + AluSc SINE Alu 1 293 -16 210 200 14 100 chr11 148302248 148302318 -2481235 - MIR SINE MIR -163 99 36 2107 110 0 13 chr11 148303025 148303333 -2480220 + AluSx SINE Alu 1 304 -8 24 0 0 0 chr11 148303745 148303769 -2479784 + AT_rich Low_complexity Low_complexity 1 24 0 2520 20 0 3 chr11 148304358 148304651 -2478902 - AluY SINE Alu -19 292 1 1939 82 36 7 chr11 148304976 148305255 -2478298 - AluSc SINE Alu -22 287 1 279 0 0 0 chr11 148305259 148305290 -2478263 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 884 193 71 5 chr11 148305295 148305492 -2478061 - MER58A DNA MER1_type -14 210 1 21 36 0 0 chr11 148305916 148305944 -2477609 + AT_rich Low_complexity Low_complexity 1 28 0 309 253 105 0 chr11 148307051 148307146 -2476407 + L2 LINE L2 48 152 -3162 * 316 214 331 40 chr11 148307136 148307384 -2476169 + L2 LINE L2 2984 3303 -10 241 202 273 30 chr11 148307946 148308045 -2475508 + L2 LINE L2 3187 3309 -4 2133 95 31 0 chr11 148308967 148309261 -2474292 - AluSx SINE Alu -9 303 1 429 279 104 54 chr11 148309680 148309978 -2473575 + L1M4 LINE L1 5063 5375 -771 227 128 43 0 chr11 148309978 148310025 -2473528 + L1M1 LINE L1 5383 5431 -872 1900 115 34 3 chr11 148310391 148310686 -2472867 + AluSp SINE Alu 1 304 -9 271 190 135 105 chr11 148312026 148312226 -2471327 - L1MC5 LINE L1 -54 7907 7702 935 150 27 0 chr11 148312226 148312373 -2471180 - FRAM SINE Alu -15 151 1 584 272 86 58 chr11 148312383 148312640 -2470913 + L2 LINE L2 1534 1797 -1517 1052 222 100 44 chr11 148312641 148312961 -2470592 + MER2 DNA MER2_type 2 339 -6 976 309 104 14 chr11 148313139 148313954 -2469599 + L2 LINE L2 2383 3272 -41 417 322 72 7 chr11 148313982 148314134 -2469419 + MIR SINE MIR 100 261 -1 349 301 78 13 chr11 148314931 148315084 -2468469 - MIR SINE MIR -46 216 54 2068 123 7 3 chr11 148317300 148317608 -2465945 - AluSq SINE Alu -4 309 1 1673 187 113 14 chr11 148317647 148318080 -2465473 + Charlie4a DNA MER1_type 30 505 -3 282 261 118 33 chr11 148319548 148319670 -2463883 + MIR SINE MIR 21 153 -109 354 308 103 8 chr11 148320391 148320508 -2463045 - L2 LINE L2 -2 3270 3143 226 233 111 22 chr11 148320927 148321017 -2462536 + MER58B DNA MER1_type 242 339 -2 415 316 124 36 chr11 148321107 148321557 -2461996 + L2 LINE L2 1851 2376 -938 1812 129 7 11 chr11 148321557 148321867 -2461686 + AluSx SINE Alu 1 309 0 415 316 124 36 chr11 148321867 148322050 -2461503 + L2 LINE L2 2376 2541 -773 368 316 66 87 chr11 148322140 148322475 -2461078 + L2 LINE L2 2945 3272 0 866 128 0 0 chr11 148324440 148324565 -2458988 - FRAM SINE Alu -17 159 35 21 0 0 0 chr11 148324571 148324592 -2458961 + AT_rich Low_complexity Low_complexity 1 21 0 272 317 58 0 chr11 148325351 148325455 -2458098 + MIR SINE MIR 3 112 -150 425 124 44 168 chr11 148327744 148327881 -2455672 + MER104 DNA Tc2 5 124 -56 1273 277 51 54 chr11 148328850 148329408 -2454145 + L1MC4 LINE L1 7170 7727 -315 2362 63 0 3 chr11 148329408 148329708 -2453845 + AluY SINE Alu 1 299 -12 1273 277 51 54 chr11 148329708 148329856 -2453697 + L1MC4 LINE L1 7727 7874 -168 279 226 0 16 chr11 148329952 148330014 -2453539 + L1ME3A LINE L1 6015 6075 -95 566 105 0 57 chr11 148330517 148330622 -2452931 - L1MB4 LINE L1 -14 6166 6068 1929 106 62 10 chr11 148330623 148330915 -2452638 - AluSx SINE Alu -5 307 1 321 26 0 0 chr11 148331605 148331643 -2451910 + (TG)n Simple_repeat Simple_repeat 2 39 0 198 281 16 31 chr11 148331791 148331855 -2451698 - L2 LINE L2 -522 2792 2730 271 285 78 55 chr11 148331861 148332042 -2451511 + L2 LINE L2 2277 3272 0 2487 106 19 3 chr11 148333723 148334091 -2449462 - L1PB1 LINE L1 -5 6146 5773 195 209 0 23 chr11 148334781 148334824 -2448729 - MIR SINE MIR -61 147 106 1653 170 13 22 chr11 148334928 148335240 -2448313 + AluJb SINE Alu 1 309 -3 231 273 263 24 chr11 148335313 148335522 -2448031 - MIR SINE MIR 0 262 4 220 381 52 0 chr11 148336006 148336103 -2447450 + MIR3 SINE MIR 97 198 -10 310 298 84 0 chr11 148337862 148337993 -2445560 - MIR SINE MIR -2 260 119 765 137 28 37 chr11 148338509 148338668 -2444885 - L1MC1 LINE L1 -1 6332 6173 2080 70 3 33 chr11 148338668 148338967 -2444586 + AluSc SINE Alu 1 290 -19 765 137 28 37 chr11 148338967 148339363 -2444190 - L1MC1 LINE L1 -160 6173 5698 1810 125 0 14 chr11 148339453 148339733 -2443820 + AluJb SINE Alu 37 312 0 746 173 167 6 chr11 148339733 148340009 -2443544 - L1MCa LINE L1 -4479 1947 1538 6753 154 66 35 chr11 148340021 148340341 -2443212 - L1MCa LINE L1 -5008 1418 1109 2163 125 0 0 chr11 148340341 148340653 -2442900 - AluSx SINE Alu 0 312 1 6753 154 66 35 chr11 148340653 148341688 -2441865 - L1MCa LINE L1 -5317 1109 21 30 0 0 0 chr11 148341743 148341773 -2441780 + AT_rich Low_complexity Low_complexity 1 30 0 333 0 0 0 chr11 148342355 148342392 -2441161 + (GAA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr11 148345000 148345022 -2438531 + AT_rich Low_complexity Low_complexity 1 22 0 2320 87 0 10 chr11 148345025 148345348 -2438205 + AluSp SINE Alu 1 320 0 234 91 0 0 chr11 148346161 148346194 -2437359 + (A)n Simple_repeat Simple_repeat 1 33 0 655 167 69 23 chr11 148346321 148346495 -2437058 - L1MA9 LINE L1 -86 6226 6045 2235 129 3 0 chr11 148346502 148346805 -2436748 - AluSx SINE Alu -8 304 1 2290 116 0 3 chr11 148347087 148347389 -2436164 + AluSc SINE Alu 1 301 -8 287 318 78 39 chr11 148347421 148347550 -2436003 - L2 LINE L2 -2 3270 3137 2775 206 53 112 chr11 148348203 148348701 -2434852 + L1MC5 LINE L1 6702 7228 -733 2260 119 3 3 chr11 148348701 148349012 -2434541 + AluSx SINE Alu 1 311 -1 2775 206 53 112 chr11 148349012 148349418 -2434135 + L1MC5 LINE L1 7228 7656 -305 2140 128 0 0 chr11 148349418 148349708 -2433845 - AluSg SINE Alu -20 290 1 2775 206 53 112 chr11 148349708 148349813 -2433740 + L1MC5 LINE L1 7656 7766 -195 1872 134 6 41 chr11 148349813 148350127 -2433426 + AluJo SINE Alu 1 303 -9 2775 206 53 112 chr11 148350127 148350195 -2433358 + L1MC5 LINE L1 7766 7836 -125 1454 199 14 18 chr11 148350195 148350481 -2433072 + AluJo SINE Alu 1 285 -27 2775 206 53 112 chr11 148350481 148350688 -2432865 + L1MC5 LINE L1 7836 7913 -48 463 68 0 0 chr11 148350775 148350834 -2432719 - AluSq SINE Alu -14 297 239 1497 110 0 15 chr11 148350836 148351036 -2432517 - AluSq SINE Alu -116 197 1 2466 81 0 0 chr11 148351174 148351472 -2432081 + AluSx SINE Alu 1 298 -14 624 243 147 5 chr11 148351874 148352092 -2431461 + MIR SINE MIR 14 262 0 184 267 67 17 chr11 148352142 148352202 -2431351 + L2 LINE L2 3208 3270 -2 225 0 0 0 chr11 148352541 148352566 -2430987 + (CTG)n Simple_repeat Simple_repeat 3 27 0 2358 91 3 0 chr11 148352786 148353083 -2430470 - AluSp SINE Alu -15 298 1 1887 128 6 78 chr11 148354330 148354477 -2429076 + AluJb SINE Alu 1 157 -155 2483 64 0 3 chr11 148354477 148354775 -2428778 + AluY SINE Alu 1 297 -14 2241 112 0 0 chr11 148354785 148355079 -2428474 + AluSx SINE Alu 1 294 -18 1887 128 6 78 chr11 148355079 148355255 -2428298 + AluJb SINE Alu 166 311 -1 226 288 25 25 chr11 148355575 148355655 -2427898 - Charlie4 DNA MER1_type 0 1961 1882 2265 90 21 3 chr11 148356022 148356310 -2427243 - AluSx SINE Alu -19 293 1 21 36 0 0 chr11 148357979 148358007 -2425546 + AT_rich Low_complexity Low_complexity 1 28 0 2004 103 46 0 chr11 148358373 148358655 -2424898 + AluSx SINE Alu 1 295 -17 2360 98 0 3 chr11 148359856 148360163 -2423390 + AluSq SINE Alu 1 306 -7 183 80 0 0 chr11 148360296 148360321 -2423232 + (A)n Simple_repeat Simple_repeat 1 25 0 2135 112 21 0 chr11 148361097 148361383 -2422170 + AluSx SINE Alu 1 292 -20 202 227 0 0 chr11 148361794 148361838 -2421715 - L2 LINE L2 -3 3310 3267 2226 94 7 0 chr11 148362819 148363105 -2420448 - AluSp SINE Alu -25 288 1 315 286 145 44 chr11 148363347 148363644 -2419909 - L2 LINE L2 -340 2974 2648 856 252 115 14 chr11 148363644 148364179 -2419374 + MLT2E LTR ERVL 2 624 -4 441 0 0 0 chr11 148365653 148365702 -2417851 + (GA)n Simple_repeat Simple_repeat 1 49 0 237 33 0 0 chr11 148367712 148367742 -2415811 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 612 198 77 55 chr11 148367759 148367941 -2415612 + L1MB7 LINE L1 5970 6155 -29 1830 85 152 50 chr11 148368932 148369215 -2414338 + AluSx SINE Alu 1 312 0 980 182 0 6 chr11 148370115 148370280 -2413273 - FRAM SINE Alu -15 161 1 1877 158 0 17 chr11 148370408 148370700 -2412853 - AluJb SINE Alu -24 288 2 375 181 14 0 chr11 148371171 148371243 -2412310 - MIR3 SINE MIR -21 187 115 182 191 24 24 chr11 148372089 148372131 -2411422 + MIR3 SINE MIR 141 182 -26 2341 46 7 7 chr11 148373544 148373874 -2409679 - AluY SINE Alu 0 330 1 1833 150 27 7 chr11 148374771 148375065 -2408488 - AluJb SINE Alu -11 301 2 820 214 35 52 chr11 148375287 148375577 -2407976 - L1MC5 LINE L1 -74 7887 7603 185 231 135 19 chr11 148375602 148375654 -2407899 - L2 LINE L2 -12 3260 3203 1339 261 52 42 chr11 148375802 148376381 -2407172 + L2 LINE L2 761 1345 -1969 475 284 46 76 chr11 148376410 148376713 -2406840 + L2 LINE L2 2566 2859 -455 794 209 23 18 chr11 148377626 148377824 -2405729 + L1ME3A LINE L1 5557 5755 -366 711 267 67 94 chr11 148377834 148378268 -2405285 + MER21B LTR ERV1 24 445 -418 27 92 0 0 chr11 148378272 148378348 -2405205 + AT_rich Low_complexity Low_complexity 1 76 0 2478 74 0 0 chr11 148378381 148378677 -2404876 + AluY SINE Alu 1 296 -15 597 287 55 15 chr11 148378678 148378880 -2404673 + MER21A LTR ERV1 578 787 -144 1694 208 57 5 chr11 148378890 148379279 -2404274 + L1ME3A LINE L1 5751 6159 -11 879 307 162 32 chr11 148380087 148380646 -2402907 + L2 LINE L2 2043 2528 -785 580 167 0 0 chr11 148380646 148380748 -2402805 + L1MA4 LINE L1 6196 6297 -3 879 307 162 32 chr11 148380748 148381246 -2402307 + L2 LINE L2 2528 3232 -81 231 242 47 39 chr11 148381338 148381466 -2402087 - L1ME LINE L1 -281 5840 5712 315 298 81 12 chr11 148381475 148381636 -2401917 + HsTC2 DNA Tc2 10 181 -1717 768 221 102 13 chr11 148381671 148381897 -2401656 + HsTC2 DNA Tc2 500 745 -1153 * 1162 225 108 45 chr11 148381893 148382319 -2401234 + HsTC2 DNA Tc2 1272 1900 0 977 93 22 0 chr11 148382570 148382709 -2400844 - L1PA10 LINE L1 -1 6167 6026 2043 157 14 6 chr11 148383578 148383923 -2399630 + MER47A DNA MER2_type 19 366 0 1556 129 0 0 chr11 148383997 148384206 -2399347 - AluSq SINE Alu -104 209 1 1189 110 23 6 chr11 148385414 148385587 -2397966 + MLT1B LTR MaLR 1 176 -214 925 156 0 0 chr11 148385588 148385723 -2397830 + AluJo SINE Alu 1 135 -177 2270 107 3 0 chr11 148385723 148386021 -2397532 + AluSc SINE Alu 1 299 -10 1264 145 13 31 chr11 148386039 148386267 -2397286 + MLT1B LTR MaLR 162 385 -5 2277 38 41 24 chr11 148386323 148386616 -2396937 + AluY SINE Alu 1 298 -13 229 152 43 0 chr11 148387390 148387436 -2396117 + L1MB8 LINE L1 6125 6172 -6 2005 118 3 47 chr11 148387972 148388293 -2395260 + AluSx SINE Alu 3 309 -3 241 341 45 22 chr11 148388833 148389056 -2394497 + MIR SINE MIR 3 230 -32 1092 218 99 29 chr11 148389550 148389935 -2393618 + LTR52 LTR ERVL 7 418 -3 204 287 38 34 chr11 148390640 148390797 -2392756 - L3 LINE CR1 -237 1340 1145 712 321 25 32 chr11 148390818 148391133 -2392420 - L3 LINE CR1 -563 1014 702 527 280 156 9 chr11 148391218 148391429 -2392124 + MIR SINE MIR 21 262 0 2246 85 0 11 chr11 148391672 148391953 -2391600 + AluSq SINE Alu 1 278 -35 1982 144 17 3 chr11 148391977 148392275 -2391278 + AluJb SINE Alu 1 302 -10 348 219 101 71 chr11 148394280 148394449 -2389104 + L1ME LINE L1 5422 5595 -526 288 111 22 0 chr11 148394506 148394551 -2389002 - L1MC5 LINE L1 -96 7865 7820 1524 152 8 19 chr11 148394585 148394842 -2388711 - AluJb SINE Alu -58 254 1 456 143 76 29 chr11 148394842 148394947 -2388606 - L1MC5 LINE L1 -128 7833 7724 2256 110 0 13 chr11 148395001 148395300 -2388253 - AluSq SINE Alu -18 295 1 2207 88 3 0 chr11 148395314 148395597 -2387956 - AluSx SINE Alu -9 303 20 238 250 179 65 chr11 148395749 148395917 -2387636 + L1ME LINE L1 5602 5788 -333 182 62 31 0 chr11 148395919 148395951 -2387602 + (TA)n Simple_repeat Simple_repeat 1 33 0 28 0 0 0 chr11 148396025 148396053 -2387500 + AT_rich Low_complexity Low_complexity 1 28 0 2266 114 0 7 chr11 148396280 148396586 -2386967 - AluSx SINE Alu -8 304 1 1822 164 49 0 chr11 148396693 148396980 -2386573 - AluJo SINE Alu -11 301 1 22 0 0 0 chr11 148398142 148398164 -2385389 + AT_rich Low_complexity Low_complexity 1 22 0 2205 121 13 0 chr11 148398307 148398613 -2384940 + AluSx SINE Alu 1 310 -2 2344 76 0 3 chr11 148399349 148399638 -2383915 - AluSg1 SINE Alu -21 288 1 202 302 104 10 chr11 148399638 148399734 -2383819 + L2 LINE L2 3209 3313 0 2265 94 0 7 chr11 148400381 148400687 -2382866 + AluSq SINE Alu 1 304 0 186 222 0 22 chr11 148400727 148400772 -2382781 + L2 LINE L2 3229 3272 0 1118 177 111 33 chr11 148401798 148402069 -2381484 - AluJo SINE Alu -10 302 11 22 35 0 0 chr11 148402112 148402141 -2381412 + AT_rich Low_complexity Low_complexity 1 29 0 269 140 55 0 chr11 148402145 148402221 -2381332 + L1MC4 LINE L1 7627 7805 -97 268 309 106 53 chr11 148402293 148402558 -2380995 + MARNA DNA Mariner 294 572 -14 21 36 0 0 chr11 148403142 148403170 -2380383 + AT_rich Low_complexity Low_complexity 1 28 0 271 186 0 0 chr11 148403263 148403306 -2380247 + Alu SINE Alu 1 43 -256 2238 109 0 3 chr11 148403333 148403627 -2379926 - AluSx SINE Alu -19 293 1 673 174 0 0 chr11 148403627 148403736 -2379817 + AluSq/x SINE Alu 27 135 -178 21 0 0 0 chr11 148403736 148403757 -2379796 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr11 148403806 148403838 -2379715 + AT_rich Low_complexity Low_complexity 1 32 0 487 244 43 55 chr11 148404571 148404735 -2378818 + L1ME2 LINE L1 5994 6155 -9 292 158 0 35 chr11 148404806 148404863 -2378690 + L1MB7 LINE L1 6130 6184 0 1910 169 0 0 chr11 148404887 148405183 -2378370 + AluJb SINE Alu 1 296 -16 588 159 37 0 chr11 148405282 148405389 -2378164 + FLAM_A SINE Alu 1 111 -31 845 19 10 0 chr11 148405393 148405496 -2378057 + (GAGAA)n Simple_repeat Simple_repeat 4 107 0 2478 206 36 34 chr11 148405527 148406153 -2377400 - L1MD3 LINE L1 0 8040 7435 219 263 38 25 chr11 148406220 148406300 -2377253 - L2 LINE L2 -46 3226 3146 281 286 125 0 chr11 148406589 148406701 -2376852 - L1MC4a LINE L1 -1882 5926 5801 654 127 0 75 chr11 148407065 148407314 -2376239 + AluSx SINE Alu 2 312 0 317 212 15 0 chr11 148407705 148407771 -2375782 - L2 LINE L2 -5 3308 3242 24 32 0 0 chr11 148407779 148407810 -2375743 + AT_rich Low_complexity Low_complexity 1 31 0 254 295 58 74 chr11 148407856 148408002 -2375551 + MIR SINE MIR 1 146 -116 2214 102 0 0 chr11 148408002 148408309 -2375244 + AluSq SINE Alu 1 307 0 254 295 58 74 chr11 148408309 148408351 -2375202 + MIR SINE MIR 146 187 -75 1356 236 191 14 chr11 148408363 148408783 -2374770 + HsTC2 DNA Tc2 4 497 -1401 1858 200 30 43 chr11 148408794 148409149 -2374404 + HsTC2 DNA Tc2 1271 1796 -102 2428 78 3 10 chr11 148409149 148409457 -2374096 + AluSg SINE Alu 1 306 -4 1858 200 30 43 chr11 148409457 148409561 -2373992 + HsTC2 DNA Tc2 1796 1900 2 217 294 118 0 chr11 148409658 148409726 -2373827 - L2 LINE L2 -56 3216 3141 21 0 0 0 chr11 148411195 148411216 -2372337 + AT_rich Low_complexity Low_complexity 1 21 0 359 256 74 25 chr11 148411412 148411533 -2372020 + MIR SINE MIR 31 157 -105 2174 109 0 42 chr11 148411552 148411865 -2371688 + AluSx SINE Alu 1 300 -12 398 167 0 0 chr11 148412228 148412294 -2371259 + L1MB3 LINE L1 5810 5875 -308 465 306 46 15 chr11 148412296 148412492 -2371061 - MIR SINE MIR -59 203 2 2165 117 7 3 chr11 148412586 148412886 -2370667 - AluSq SINE Alu -12 301 1 1611 105 4 9 chr11 148412985 148413213 -2370340 - pTR5 LTR ERV1 -2040 398 172 285 244 0 33 chr11 148413222 148413312 -2370241 - LTR30 LTR ERV1 -92 630 544 5103 126 67 76 chr11 148413312 148414427 -2369126 - pTR5 LTR ERV1 -413 2025 742 637 296 19 0 chr11 148416052 148416268 -2367285 + MIR SINE MIR 33 252 -10 207 167 0 0 chr11 148416342 148416384 -2367169 + A-rich Low_complexity Low_complexity 3 44 0 2129 176 25 31 chr11 148416806 148417184 -2366369 + L1MB3 LINE L1 5741 6117 -66 2286 92 10 3 chr11 148417184 148417478 -2366075 + AluSq SINE Alu 1 296 -17 2129 176 25 31 chr11 148417478 148417543 -2366010 + L1MB3 LINE L1 6117 6181 -2 182 241 37 0 chr11 148417849 148417903 -2365650 + L2 LINE L2 3240 3295 -18 350 252 0 48 chr11 148418446 148418549 -2365004 - MIR SINE MIR -4 258 161 387 0 0 0 chr11 148419295 148419338 -2364215 + (CA)n Simple_repeat Simple_repeat 2 44 0 2220 89 0 0 chr11 148419338 148419619 -2363934 - AluSc SINE Alu -28 281 1 1829 151 0 25 chr11 148419710 148420028 -2363525 + AluJb SINE Alu 1 310 -2 1635 207 29 3 chr11 148422001 148422344 -2361209 + L1MB7 LINE L1 5404 5755 -423 955 137 88 68 chr11 148422412 148422617 -2360936 + MER1B DNA MER1_type 128 336 -3 1406 204 37 58 chr11 148422620 148422899 -2360654 + L1MB7 LINE L1 5750 6020 -164 2386 94 3 0 chr11 148422899 148423206 -2360347 - AluSq SINE Alu -3 310 3 1406 204 37 58 chr11 148423206 148423303 -2360250 + L1MB7 LINE L1 6020 6118 -66 2262 114 0 0 chr11 148423651 148423941 -2359612 + AluSq SINE Alu 1 290 -23 21 0 0 0 chr11 148423942 148423963 -2359590 + AT_rich Low_complexity Low_complexity 1 21 0 1791 169 3 7 chr11 148424013 148424303 -2359250 + AluJb SINE Alu 1 289 -23 219 114 0 0 chr11 148424303 148424338 -2359215 + (TG)n Simple_repeat Simple_repeat 2 36 0 1219 106 0 6 chr11 148424343 148424503 -2359050 - AluSq SINE Alu -55 258 100 1719 160 3 33 chr11 148424707 148425007 -2358546 + AluJb SINE Alu 1 291 -21 561 105 12 12 chr11 148425019 148425105 -2358448 - AluSg/x SINE Alu -15 297 212 1629 175 18 4 chr11 148425206 148425486 -2358067 + AluJb SINE Alu 6 289 -23 219 114 0 0 chr11 148425486 148425521 -2358032 + (TG)n Simple_repeat Simple_repeat 2 36 0 1097 101 0 25 chr11 148425526 148425685 -2357868 - AluSq SINE Alu -55 258 104 1530 159 4 37 chr11 148425975 148426246 -2357307 + AluJb SINE Alu 30 291 -21 2167 125 0 3 chr11 148426258 148426555 -2356998 - AluSx SINE Alu -16 296 1 2453 70 0 13 chr11 148426563 148426875 -2356678 - AluY SINE Alu -3 308 1 199 336 85 21 chr11 148427217 148427452 -2356101 + L2 LINE L2 1198 1447 -1867 229 269 26 13 chr11 148428529 148428607 -2354946 - L1MC4 LINE L1 -1327 6715 6637 1930 147 37 0 chr11 148428787 148429086 -2354467 + AluJb SINE Alu 1 310 -2 276 30 0 0 chr11 148429086 148429119 -2354434 + (TA)n Simple_repeat Simple_repeat 1 33 0 1614 139 66 18 chr11 148429674 148429947 -2353606 - AluSx SINE Alu -21 291 6 2969 178 10 69 chr11 148430650 148430996 -2352557 + L1MB8 LINE L1 5482 5770 -408 2252 89 7 3 chr11 148430996 148431289 -2352264 + AluY SINE Alu 2 295 -16 2969 178 10 69 chr11 148431289 148431626 -2351927 + L1MB8 LINE L1 5770 6125 -53 994 121 7 0 chr11 148431668 148431808 -2351745 - AluJb SINE Alu -171 141 1 310 211 0 0 chr11 148431814 148431882 -2351671 + L1MB8 LINE L1 6115 6184 0 2534 58 0 0 chr11 148431914 148432205 -2351348 - AluY SINE Alu -20 291 1 733 210 19 6 chr11 148432441 148432598 -2350955 + FRAM SINE Alu 6 164 -12 1941 128 3 73 chr11 148433197 148433343 -2350210 + AluSx SINE Alu 1 113 -199 2380 81 0 3 chr11 148433343 148433639 -2349914 + AluY SINE Alu 5 299 -12 1941 128 3 73 chr11 148433639 148433821 -2349732 + AluSx SINE Alu 113 306 -6 809 113 0 24 chr11 148433922 148434046 -2349507 - FLAM_C SINE Alu -20 123 3 1950 90 57 36 chr11 148434677 148434812 -2348741 + AluSx SINE Alu 1 132 -180 2302 94 3 0 chr11 148434812 148435110 -2348443 + AluSx SINE Alu 1 299 -13 1950 90 57 36 chr11 148435110 148435275 -2348278 + AluSx SINE Alu 132 307 -5 263 272 0 0 chr11 148435586 148435667 -2347886 - MIR SINE MIR -12 250 170 515 237 110 24 chr11 148436238 148436552 -2347001 - L1MC/D LINE L1 -694 5665 5311 637 253 129 55 chr11 148436664 148436769 -2346784 - L1MC/D LINE L1 -1283 4863 4767 2509 62 0 0 chr11 148436769 148437059 -2346494 - AluY SINE Alu -21 290 1 637 253 129 55 chr11 148437059 148437333 -2346220 - L1MC/D LINE L1 -1379 4767 4456 2196 90 30 20 chr11 148437464 148437764 -2345789 + AluSg SINE Alu 1 303 -7 746 153 0 16 chr11 148437775 148437899 -2345654 + FLAM_A SINE Alu 8 129 -13 2401 87 0 7 chr11 148437920 148438229 -2345324 - AluY SINE Alu -4 307 1 2314 106 3 0 chr11 148438941 148439252 -2344301 + AluSx SINE Alu 1 312 0 1174 187 180 0 chr11 148439591 148439880 -2343673 + MER58B DNA MER1_type 1 341 0 206 169 108 31 chr11 148440211 148440276 -2343277 - MIR SINE MIR -74 134 64 1922 166 0 3 chr11 148440473 148440781 -2342772 + AluJo SINE Alu 1 307 -5 1033 144 154 25 chr11 148441280 148441565 -2341988 - MER33 DNA MER1_type -2 322 1 1928 158 0 3 chr11 148442096 148442399 -2341154 - AluJb SINE Alu -10 302 1 321 267 127 18 chr11 148443210 148443319 -2340234 + L1ME4a LINE L1 5939 6073 -48 2495 67 3 0 chr11 148443319 148443619 -2339934 - AluSq SINE Alu -12 301 1 321 267 127 18 chr11 148443619 148443674 -2339879 + L1ME4a LINE L1 6073 6121 0 251 155 172 0 chr11 148444023 148444081 -2339472 + L1MB5 LINE L1 6101 6168 -6 1876 129 11 0 chr11 148444101 148444380 -2339173 + AluJb SINE Alu 1 282 -30 22 0 0 0 chr11 148445227 148445249 -2338304 + GC_rich Low_complexity Low_complexity 1 22 0 195 239 0 125 chr11 148446801 148446889 -2336664 + MIR SINE MIR 156 232 -30 2109 113 3 0 chr11 148447041 148447351 -2336202 - AluSx SINE Alu 0 311 1 1795 159 20 0 chr11 148447430 148447731 -2335822 + AluJo SINE Alu 5 311 -1 256 219 24 85 chr11 148448233 148448315 -2335238 - MER5A DNA MER1_type -53 136 60 841 287 104 34 chr11 148448370 148448725 -2334828 - L2 LINE L2 -8 3305 2926 324 255 0 51 chr11 148448758 148448856 -2334697 - L2 LINE L2 0 3313 3221 183 279 19 163 chr11 148448841 148449056 -2334497 - L2 LINE L2 -345 2969 2786 * 1626 304 75 54 chr11 148449141 148450065 -2333488 - L2 LINE L2 -561 2753 1811 559 125 0 0 chr11 148450120 148450200 -2333353 + AluJ/FRAM SINE Alu 219 298 -14 368 133 0 0 chr11 148450204 148450264 -2333289 + L1MC4 LINE L1 7572 7631 -411 2181 99 38 7 chr11 148450270 148450563 -2332990 + AluSx SINE Alu 1 302 -10 1223 260 52 14 chr11 148450563 148450928 -2332625 + MLT1C LTR MaLR 86 464 -3 790 146 36 29 chr11 148451105 148451242 -2332311 + FLAM_C SINE Alu 6 143 0 1083 185 0 5 chr11 148451264 148451448 -2332105 + FRAM SINE Alu 1 175 -1 383 200 0 11 chr11 148451459 148451549 -2332004 + GA-rich Low_complexity Low_complexity 4 92 0 1382 149 104 31 chr11 148452066 148452354 -2331199 + AluJb SINE Alu 1 309 -3 1818 177 3 0 chr11 148452861 148453166 -2330387 + AluSx SINE Alu 1 306 -6 381 162 0 0 chr11 148453172 148453240 -2330313 + GA-rich Low_complexity Low_complexity 3 70 0 2419 69 0 3 chr11 148453287 148453590 -2329963 - AluY SINE Alu -9 302 1 257 275 92 35 chr11 148453607 148453749 -2329804 + L1M4 LINE L1 4052 4201 -1945 2116 102 7 33 chr11 148453813 148454116 -2329437 + AluSp SINE Alu 1 295 -18 266 218 0 0 chr11 148454391 148454446 -2329107 + L1MEc LINE L1 1633 1687 -4709 631 179 24 0 chr11 148454552 148454675 -2328878 + L1MB3 LINE L1 6053 6178 -5 2221 107 0 7 chr11 148454683 148454993 -2328560 - AluSx SINE Alu -4 308 1 2200 108 0 17 chr11 148454997 148455294 -2328259 - AluSg SINE Alu -18 292 1 2046 128 0 10 chr11 148455334 148455623 -2327930 + AluSx SINE Alu 5 290 -22 956 217 0 0 chr11 148456025 148456182 -2327371 + FAM SINE Alu 2 158 -17 26 50 0 0 chr11 148456187 148456227 -2327326 + AT_rich Low_complexity Low_complexity 1 40 0 1831 161 3 3 chr11 148456229 148456515 -2327038 + AluSx SINE Alu 1 286 -26 2100 94 33 0 chr11 148456525 148456830 -2326723 + AluSx SINE Alu 1 314 0 310 273 8 39 chr11 148456835 148456963 -2326590 + L1MEc LINE L1 2208 2331 -3884 247 150 0 0 chr11 148456963 148457003 -2326550 + MER4E LTR ERV1 667 706 -73 22 35 0 0 chr11 148457003 148457032 -2326521 + AT_rich Low_complexity Low_complexity 1 29 0 440 242 60 22 chr11 148457036 148457218 -2326335 + L1MEc LINE L1 2317 2505 -3710 473 249 23 57 chr11 148457244 148457421 -2326132 + L1ME1 LINE L1 12 182 -6214 546 247 88 35 chr11 148457546 148457716 -2325837 + L1ME1 LINE L1 258 436 -5960 2651 204 35 65 chr11 148457766 148457882 -2325671 + L1ME1 LINE L1 5384 5502 -733 2109 121 10 0 chr11 148457882 148458179 -2325374 + AluSg SINE Alu 1 300 -10 2651 204 35 65 chr11 148458179 148458452 -2325101 + L1ME1 LINE L1 5502 5782 -453 1684 179 14 4 chr11 148458452 148458731 -2324822 + AluJb SINE Alu 14 295 -17 2651 204 35 65 chr11 148458731 148458813 -2324740 + L1ME1 LINE L1 5782 5865 -370 2189 120 49 63 chr11 148458813 148459180 -2324373 + THE1B LTR MaLR 1 362 -2 2651 204 35 65 chr11 148459180 148459447 -2324106 + L1ME1 LINE L1 5865 6102 -133 2271 106 0 0 chr11 148459681 148459984 -2323569 + AluYa5 SINE Alu 1 303 -8 1607 181 23 23 chr11 148460228 148460531 -2323022 - AluJb SINE Alu -9 303 1 819 167 8 0 chr11 148460531 148460651 -2322902 - AluJo/FLAM SINE Alu -185 127 7 264 265 55 39 chr11 148460675 148460856 -2322697 + L1MC4a LINE L1 5279 5462 -712 414 209 5 147 chr11 148460993 148461159 -2322394 - MER2 DNA MER2_type 0 345 214 2348 109 0 0 chr11 148461159 148461461 -2322092 + AluSx SINE Alu 1 302 -10 414 209 5 147 chr11 148461461 148461505 -2322048 - MER2 DNA MER2_type -131 214 165 * 569 178 287 6 chr11 148461503 148461715 -2321838 - MLT2C1 LTR ERVL -148 266 2 * 1023 153 34 0 chr11 148461715 148461886 -2321667 - MER2 DNA MER2_type -167 178 2 291 301 123 45 chr11 148461970 148462173 -2321380 + L1MC4a LINE L1 5673 5859 -1949 989 190 114 117 chr11 148462173 148462398 -2321155 - MLT2C1 LTR ERVL -3 394 169 2303 48 48 7 chr11 148462398 148462690 -2320863 - AluY SINE Alu -6 305 2 989 190 114 117 chr11 148462690 148462859 -2320694 - MLT2C1 LTR ERVL -228 169 1 291 301 123 45 chr11 148462859 148462905 -2320648 + L1MC4a LINE L1 5859 5900 -1908 213 39 0 0 chr11 148462905 148462931 -2320622 + (TG)n Simple_repeat Simple_repeat 1 26 0 291 301 123 45 chr11 148462931 148462949 -2320604 + L1MC4a LINE L1 5900 5962 -1846 21 0 0 0 chr11 148463095 148463116 -2320437 + AT_rich Low_complexity Low_complexity 1 21 0 1480 251 39 37 chr11 148463312 148463771 -2319782 - MLT1C LTR MaLR -1 466 7 831 121 0 57 chr11 148463844 148463968 -2319585 + AluJo SINE Alu 2 118 -184 2248 73 7 7 chr11 148464000 148464300 -2319253 + AluY SINE Alu 1 300 -11 651 194 0 19 chr11 148464347 148464455 -2319098 + AluJo SINE Alu 2 107 -205 3621 117 143 122 chr11 148464455 148465800 -2317753 + pTR5 LTR ERV1 748 2438 0 866 206 22 11 chr11 148465800 148465984 -2317569 + AluJo SINE Alu 97 282 -30 251 290 30 10 chr11 148465994 148466094 -2317459 + L1M4 LINE L1 4113 4214 -1932 2328 70 7 3 chr11 148466866 148467164 -2316389 - AluY SINE Alu -12 299 1 2175 114 0 7 chr11 148467634 148467933 -2315620 - AluSx SINE Alu -15 297 1 2283 109 0 0 chr11 148468110 148468413 -2315140 - AluSx SINE Alu -9 303 1 2325 102 0 0 chr11 148468814 148469107 -2314446 - AluSg SINE Alu -17 293 1 2144 87 25 0 chr11 148469408 148469685 -2313868 + AluSc SINE Alu 14 297 -12 1895 160 3 0 chr11 148469702 148470002 -2313551 + AluJb SINE Alu 1 301 -11 1504 154 0 79 chr11 148470070 148470375 -2313178 - AluJo SINE Alu -17 295 15 481 259 141 6 chr11 148470394 148470554 -2312999 - MER5A DNA MER1_type -1 188 4 2269 106 0 10 chr11 148470702 148471005 -2312548 - AluSg SINE Alu -10 300 1 2518 71 0 3 chr11 148471241 148471549 -2312004 - AluY SINE Alu -4 307 1 2604 64 0 3 chr11 148471602 148471914 -2311639 - AluY SINE Alu 0 311 1 895 103 0 0 chr11 148472526 148472642 -2310911 + AluSg/x SINE Alu 188 303 -9 2011 119 3 30 chr11 148472717 148473019 -2310534 - AluSx SINE Alu -18 294 1 2436 97 0 0 chr11 148473034 148473344 -2310209 - AluSx SINE Alu -2 310 1 256 182 0 61 chr11 148473344 148473410 -2310143 + MIR SINE MIR 103 164 -98 327 239 0 0 chr11 148473458 148473529 -2310024 + MLT1J LTR MaLR 110 180 -331 371 274 53 18 chr11 148473560 148473673 -2309880 + MLT1J LTR MaLR 257 373 -138 216 111 0 0 chr11 148473888 148473924 -2309629 + (TTA)n Simple_repeat Simple_repeat 2 37 0 1530 169 29 0 chr11 148474322 148474595 -2308958 + L1PB1 LINE L1 1 281 -6582 * 10256 194 19 28 chr11 148474584 148475580 -2307973 + L1PB1 LINE L1 3487 4491 -2376 2174 99 0 7 chr11 148475580 148475873 -2307680 + AluSg SINE Alu 1 291 -19 10256 194 19 28 chr11 148475873 148478072 -2305481 + L1PB1 LINE L1 4491 6650 -217 1135 116 12 0 chr11 148478082 148478246 -2305307 + L1PB1 LINE L1 6702 6867 0 22 94 0 0 chr11 148478284 148478348 -2305205 + AT_rich Low_complexity Low_complexity 1 64 0 1710 159 37 0 chr11 148478876 148479172 -2304381 - MER2 DNA MER2_type -23 322 16 579 261 18 12 chr11 148481233 148481398 -2302155 - MER117 DNA MER1_type -31 166 1 23 0 0 0 chr11 148481491 148481514 -2302039 + AT_rich Low_complexity Low_complexity 1 23 0 206 264 92 46 chr11 148481768 148481855 -2301698 + MER5B DNA MER1_type 14 104 -74 339 25 0 0 chr11 148481882 148481922 -2301631 + (TG)n Simple_repeat Simple_repeat 2 41 0 276 338 0 0 chr11 148483100 148483168 -2300385 - L2 LINE L2 0 3313 3246 219 150 0 0 chr11 148483263 148483303 -2300250 + (T)n Simple_repeat Simple_repeat 1 40 0 355 89 0 127 chr11 148483304 148483383 -2300170 - L1PA10 LINE L1 -1 6167 6099 289 314 12 0 chr11 148484318 148484404 -2299149 - MIR SINE MIR -108 154 68 2581 294 68 20 chr11 148484425 148485357 -2298196 + L2 LINE L2 1388 2363 -951 184 329 71 0 chr11 148485371 148485456 -2298097 + L2 LINE L2 3223 3313 0 303 289 122 37 chr11 148485657 148485927 -2297626 + L2 LINE L2 3021 3313 0 595 203 72 43 chr11 148486191 148486398 -2297155 - MER106B DNA MER1_type -4 1055 20 199 254 146 55 chr11 148486897 148487007 -2296546 - MIR SINE MIR -70 138 19 252 286 31 31 chr11 148487822 148487920 -2295633 + L2 LINE L2 2475 2572 -742 937 186 208 50 chr11 148487963 148488242 -2295311 + MER33 DNA MER1_type 1 323 -1 494 300 196 23 chr11 148488243 148488690 -2294863 + L2 LINE L2 2626 3186 -127 351 0 0 0 chr11 148488690 148488729 -2294824 + (TG)n Simple_repeat Simple_repeat 2 40 0 494 300 196 23 chr11 148488729 148488872 -2294681 + L2 LINE L2 3186 3303 -10 269 336 152 9 chr11 148489713 148489924 -2293629 + MIR SINE MIR 1 241 -21 326 232 29 0 chr11 148490147 148490216 -2293337 - MIR3 SINE MIR -22 186 116 382 357 85 8 chr11 148491182 148491551 -2292002 + LTR16B LTR ERVL 23 441 -9 203 275 69 92 chr11 148492527 148492658 -2290895 - MIR SINE MIR -12 250 123 262 355 134 12 chr11 148493115 148493287 -2290266 + MIR SINE MIR 59 251 -11 240 35 0 0 chr11 148493810 148493839 -2289714 + (CA)n Simple_repeat Simple_repeat 1 29 0 242 56 28 0 chr11 148493852 148493888 -2289665 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 405 294 28 56 chr11 148495894 148496108 -2287445 + MLT1K LTR MaLR 381 588 0 422 351 50 10 chr11 148496773 148496975 -2286578 + MIR SINE MIR 3 212 -50 241 399 76 0 chr11 148497048 148497206 -2286347 - MIR3 SINE MIR -17 191 22 992 173 0 0 chr11 148498421 148498577 -2284976 - FRAM SINE Alu -20 156 1 255 267 22 11 chr11 148498908 148498998 -2284555 + MER117 DNA MER1_type 4 94 -103 2487 58 0 0 chr11 148499162 148499457 -2284096 + AluY SINE Alu 1 295 -16 241 302 16 0 chr11 148499622 148499685 -2283868 + L2 LINE L2 2989 3052 -261 524 310 7 0 chr11 148500096 148500251 -2283302 - MIR SINE MIR -23 239 84 1571 174 0 82 chr11 148500642 148500946 -2282607 + AluJo SINE Alu 9 287 -25 683 296 26 55 chr11 148501645 148502269 -2281284 - L1MEd LINE L1 -4970 1149 544 192 286 0 0 chr11 148502566 148502615 -2280938 - L2 LINE L2 -14 3299 3251 392 274 38 9 chr11 148502615 148502721 -2280832 + MER81 DNA DNA 1 109 -5 270 345 143 37 chr11 148503004 148503227 -2280326 - L2 LINE L2 -24 3289 3014 2637 48 0 0 chr11 148503227 148503538 -2280015 + AluY SINE Alu 1 311 0 270 345 143 37 chr11 148503538 148503665 -2279888 - L2 LINE L2 -299 3014 2902 301 333 94 10 chr11 148503696 148503897 -2279656 + L2 LINE L2 2867 3084 -229 455 156 144 0 chr11 148504063 148504153 -2279400 - MER3 DNA MER1_type -104 105 3 273 306 145 16 chr11 148504153 148504339 -2279214 + L2 LINE L2 3099 3308 -5 189 281 0 47 chr11 148505139 148505203 -2278350 - L2 LINE L2 -540 2774 2714 414 0 0 0 chr11 148505327 148505373 -2278180 + (TAA)n Simple_repeat Simple_repeat 2 47 0 482 388 100 14 chr11 148505375 148505966 -2277587 - L2 LINE L2 -462 2852 2211 443 351 29 23 chr11 148506034 148506205 -2277348 - MIR3 SINE MIR -21 187 16 22 0 0 0 chr11 148506205 148506227 -2277326 + AT_rich Low_complexity Low_complexity 1 22 0 34 0 0 0 chr11 148506603 148506637 -2276916 + AT_rich Low_complexity Low_complexity 1 34 0 201 39 0 0 chr11 148506778 148506804 -2276749 + (CA)n Simple_repeat Simple_repeat 2 27 0 921 319 73 28 chr11 148506990 148507454 -2276099 + L2 LINE L2 2829 3313 0 331 292 5 104 chr11 148507650 148507842 -2275711 - MIR SINE MIR -11 251 79 30 45 0 0 chr11 148508334 148508378 -2275175 + AT_rich Low_complexity Low_complexity 1 44 0 32 67 0 0 chr11 148508572 148508632 -2274921 + AT_rich Low_complexity Low_complexity 1 60 0 543 291 78 35 chr11 148509160 148509390 -2274163 + MIR SINE MIR 2 241 -21 30 0 0 0 chr11 148509396 148509426 -2274127 + AT_rich Low_complexity Low_complexity 1 30 0 210 147 0 0 chr11 148509499 148509533 -2274020 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 392 289 78 56 chr11 148510216 148510396 -2273157 + MIR3 SINE MIR 19 202 -6 623 279 85 4 chr11 148510773 148511031 -2272522 + L1M3d LINE L1 3 281 -5610 1453 236 82 11 chr11 148511050 148511659 -2271894 + L1M3d LINE L1 2471 3122 -2848 * 3703 168 15 64 chr11 148511656 148512455 -2271098 - L1MCa LINE L1 -5643 783 24 292 288 63 37 chr11 148512475 148512854 -2270699 + L1ME4a LINE L1 5725 6113 -8 24 0 0 0 chr11 148513260 148513284 -2270269 + AT_rich Low_complexity Low_complexity 1 24 0 666 273 61 15 chr11 148513290 148513488 -2270065 - MIR SINE MIR 0 262 56 287 376 41 48 chr11 148513929 148514200 -2269353 + L2 LINE L2 2917 3185 -87 355 339 73 12 chr11 148515482 148515647 -2267906 - MIR3 SINE MIR -1 207 33 244 378 159 0 chr11 148516566 148516717 -2266836 - L2 LINE L2 -288 3025 2851 7435 40 0 0 chr11 148518012 148519117 -2264436 - L1PA5 LINE L1 -1 6153 5047 326 349 8 8 chr11 148519512 148519638 -2263915 + MER5A DNA MER1_type 1 126 -63 1441 274 49 20 chr11 148520002 148520491 -2263062 - MLT1D LTR MaLR -2 503 1 414 0 0 0 chr11 148521242 148521288 -2262265 + (CA)n Simple_repeat Simple_repeat 1 46 0 274 333 0 0 chr11 148521836 148521926 -2261627 - Charlie8 DNA MER1_type -2141 276 187 404 236 72 65 chr11 148522563 148522910 -2260643 + L1MEc LINE L1 1518 1914 -4807 * 618 221 7 0 chr11 148522909 148523045 -2260508 + L1P3 LINE L1 2 138 -5737 6412 64 11 46 chr11 148523045 148524118 -2259435 + L1PA7 LINE L1 5103 6146 -8 2937 133 39 55 chr11 148524128 148524766 -2258787 + L1PA8 LINE L1 3167 3794 -2352 2693 78 0 15 chr11 148524762 148525317 -2258236 + L1PA8 LINE L1 5084 5632 -499 * 3594 98 0 2 chr11 148525417 148525937 -2257616 + L1PA8 LINE L1 5645 6163 -9 1192 185 18 60 chr11 148525957 148526007 -2257546 - L1PA15-16 LINE L1 -6427 422 371 2858 16 0 0 chr11 148526007 148526325 -2257228 + AluYb8 SINE Alu 1 318 0 1192 185 18 60 chr11 148526325 148526653 -2256900 - L1PA15-16 LINE L1 -6478 371 1 692 228 82 0 chr11 148526807 148526978 -2256575 + MER58C DNA MER1_type 1 185 -30 280 255 32 11 chr11 148527064 148527158 -2256395 + MLT1K LTR MaLR 492 587 -1 274 311 58 10 chr11 148527830 148527933 -2255620 - L2 LINE L2 -1 3312 3205 500 192 0 8 chr11 148528405 148528525 -2255028 + GA-rich Low_complexity Low_complexity 2 120 0 747 93 0 0 chr11 148528525 148528632 -2254921 - L1PA8A LINE L1 -382 5749 5643 255 31 0 0 chr11 148528641 148528673 -2254880 + (GGGA)n Simple_repeat Simple_repeat 2 33 0 797 89 0 0 chr11 148529292 148529404 -2254149 + L1PA5 LINE L1 6035 6146 -8 6272 90 1 17 chr11 148529595 148530359 -2253194 - L1PA8 LINE L1 -13 6159 5385 207 0 0 0 chr11 148530359 148530382 -2253171 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6272 90 1 17 chr11 148530382 148530412 -2253141 - L1PA8 LINE L1 -787 5385 5356 2234 113 3 0 chr11 148530412 148530704 -2252849 - AluSg SINE Alu -17 293 1 6272 90 1 17 chr11 148530704 148531390 -2252163 - L1PA8 LINE L1 -816 5356 4681 3936 207 9 6 chr11 148531391 148532316 -2251237 + L1PA16 LINE L1 423 1239 -5610 * 7329 233 37 37 chr11 148532313 148535047 -2248506 + L1PA16 LINE L1 2700 5434 -1415 1856 191 80 0 chr11 148535047 148535434 -2248119 - MSTB LTR MaLR 0 426 9 4867 191 9 8 chr11 148535445 148536875 -2246678 + L1PA16 LINE L1 5433 6861 -8 * 6167 168 65 41 chr11 148536858 148537865 -2245688 + L1PBa LINE L1 121 1103 -5760 231 114 0 0 chr11 148537865 148537900 -2245653 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6167 168 65 41 chr11 148537900 148540560 -2242993 + L1PBa LINE L1 1103 2971 -3892 2246 92 30 0 chr11 148540915 148541210 -2242343 + AluSg SINE Alu 3 306 -4 829 212 82 42 chr11 148541231 148541537 -2242016 - L1MC4 LINE L1 -37 8005 7688 2026 135 7 0 chr11 148541551 148541864 -2241689 - AluSg SINE Alu 0 315 1 1173 154 34 26 chr11 148543489 148543722 -2239831 - Tigger3(Golem) DNA MER2_type 0 3029 2795 1543 271 93 33 chr11 148543834 148544425 -2239128 + L1ME LINE L1 3884 4438 -1708 2126 120 0 0 chr11 148544425 148544744 -2238809 + AluSx SINE Alu 1 319 0 1543 271 93 33 chr11 148544744 148545236 -2238317 + L1ME LINE L1 4438 5033 -1113 344 159 58 0 chr11 148546089 148546158 -2237395 - Tigger3(Golem) DNA MER2_type -2956 73 1 2190 74 0 3 chr11 148546188 148546515 -2237038 - AluSc SINE Alu 0 326 1 1521 146 127 8 chr11 148546540 148546807 -2236746 - AluJb SINE Alu -3 299 1 283 179 14 107 chr11 148546809 148546949 -2236604 - MER113 DNA MER1_type? -394 127 1 1988 124 4 4 chr11 148546957 148547231 -2236322 + AluSg SINE Alu 10 283 -27 249 244 109 17 chr11 148547385 148547504 -2236049 - L1ME4a LINE L1 -15 6106 5977 1083 148 18 0 chr11 148547932 148548101 -2235452 - FRAM SINE Alu -7 169 1 189 296 84 14 chr11 148548191 148548262 -2235291 - L2 LINE L2 -4 3268 3193 311 227 148 0 chr11 148548308 148548396 -2235157 - MER5B DNA MER1_type -57 121 21 2295 99 0 7 chr11 148548860 148549162 -2234391 - AluSx SINE Alu -12 300 1 430 254 76 35 chr11 148549510 148549707 -2233846 - MLT1L LTR MaLR -263 352 148 348 219 101 71 chr11 148551202 148551371 -2232182 + L1ME LINE L1 5422 5595 -526 288 111 22 0 chr11 148551428 148551473 -2232080 - L1MC5 LINE L1 -96 7865 7820 1524 152 8 19 chr11 148551507 148551764 -2231789 - AluJb SINE Alu -58 254 1 456 143 76 29 chr11 148551764 148551869 -2231684 - L1MC5 LINE L1 -128 7833 7724 2336 82 7 0 chr11 148551923 148552216 -2231337 - AluSq SINE Alu -18 295 1 251 155 172 0 chr11 148552620 148552678 -2230875 + L1MB5 LINE L1 6101 6168 -6 1876 129 11 0 chr11 148552698 148552977 -2230576 + AluJb SINE Alu 1 282 -30 350 321 42 0 chr11 148553207 148553397 -2230156 - AluSg SINE Alu -101 199 2 2358 88 3 3 chr11 148553454 148553760 -2229793 - AluY SINE Alu -5 306 1 813 130 0 0 chr11 148554372 148554487 -2229066 + AluSg/x SINE Alu 186 300 -10 2126 119 0 26 chr11 148554562 148554864 -2228689 - AluSx SINE Alu -18 294 1 2448 97 0 0 chr11 148554879 148555189 -2228364 - AluSx SINE Alu -2 310 1 238 182 0 61 chr11 148555189 148555255 -2228298 + MIR SINE MIR 103 164 -98 328 239 0 0 chr11 148555303 148555374 -2228179 + MLT1J LTR MaLR 110 180 -331 368 274 53 18 chr11 148555405 148555518 -2228035 + MLT1J LTR MaLR 257 373 -138 216 111 0 0 chr11 148555733 148555769 -2227784 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2010 104 6 89 chr11 148556117 148556444 -2227109 - AluSx SINE Alu -12 300 1 189 319 66 11 chr11 148556526 148556617 -2226936 + MIR3 SINE MIR 105 200 -8 1962 174 0 0 chr11 148556873 148557177 -2226376 - AluJo SINE Alu -8 304 1 218 215 21 43 chr11 148558015 148558108 -2225445 + (CCCCG)n Simple_repeat Simple_repeat 3 93 0 2072 126 10 10 chr11 148558389 148558699 -2224854 - AluSx SINE Alu -2 310 1 455 264 118 83 chr11 148558731 148559356 -2224197 - L1ME4a LINE L1 -153 5968 5322 2323 98 3 13 chr11 148559950 148560257 -2223296 - AluSp SINE Alu -9 304 1 206 238 83 36 chr11 148560483 148560567 -2222986 - L2 LINE L2 -11 3261 3174 1550 152 6 108 chr11 148560824 148561167 -2222386 + AluJb SINE Alu 1 308 -4 2247 98 10 0 chr11 148561526 148561821 -2221732 + AluSx SINE Alu 1 298 -14 2211 104 3 10 chr11 148562185 148562483 -2221070 + AluSx SINE Alu 1 296 -16 1303 98 0 0 chr11 148562484 148562647 -2220906 + AluSp SINE Alu 134 296 -17 331 295 108 7 chr11 148562850 148562989 -2220564 + MIR SINE MIR 10 162 -100 1120 180 45 4 chr11 148563010 148563514 -2220039 + L1MB7 LINE L1 5504 6162 -22 2192 104 3 0 chr11 148563514 148563802 -2219751 + AluSx SINE Alu 2 290 -22 392 281 132 9 chr11 148563914 148564129 -2219424 - L1M4 LINE L1 -2308 3838 3603 2058 114 25 0 chr11 148564133 148564414 -2219139 - AluSx SINE Alu -24 288 1 2370 76 27 3 chr11 148564597 148564898 -2218655 - AluY SINE Alu -3 308 1 343 304 43 43 chr11 148565159 148565297 -2218256 + Tigger8 DNA MER2_type 30 167 -499 2433 92 0 0 chr11 148566089 148566393 -2217160 - AluSq SINE Alu -9 304 1 1704 167 22 19 chr11 148566933 148567244 -2216309 - AluJo SINE Alu 0 312 1 3478 155 58 0 chr11 148567254 148567874 -2215679 - L1MB1 LINE L1 0 6168 5513 2653 37 0 0 chr11 148567874 148568168 -2215385 + AluY SINE Alu 1 294 -17 1472 186 0 3 chr11 148568168 148568453 -2215100 - L1MB1 LINE L1 -2225 3921 3638 3039 168 65 42 chr11 148568456 148569077 -2214476 + L1 LINE L1 2857 3501 -2645 2260 114 0 13 chr11 148569077 148569393 -2214160 + AluSx SINE Alu 1 312 0 3039 168 65 42 chr11 148569393 148569535 -2214018 + L1 LINE L1 3501 3638 -2508 * 4211 175 110 12 chr11 148569510 148570986 -2212567 - L1MB4 LINE L1 -30 6150 4526 230 294 56 89 chr11 148571158 148571338 -2212215 + Charlie8 DNA MER1_type 3 176 -2241 250 152 130 0 chr11 148572491 148572537 -2211016 + PABL_A-int LTR ERV1 1653 1704 -3311 24 32 0 0 chr11 148572576 148572607 -2210946 + AT_rich Low_complexity Low_complexity 1 31 0 260 225 113 0 chr11 148573104 148573175 -2210378 + L2 LINE L2 2567 2645 -669 1810 171 140 38 chr11 148573505 148573927 -2209626 - MLT1C LTR MaLR 0 467 3 6046 79 13 63 chr11 148574156 148575164 -2208389 - SVA Other Other 0 1386 430 5644 73 38 52 chr11 148575217 148576077 -2207476 - SVA Other Other -518 868 21 326 297 235 25 chr11 148576118 148576441 -2207112 + HAL1 LINE L1 89 479 -2028 480 281 141 10 chr11 148576561 148576760 -2206793 + HAL1 LINE L1 793 1017 -1490 288 245 21 165 chr11 148577206 148577288 -2206265 + MIR SINE MIR 46 88 -174 7185 57 95 3 chr11 148577288 148578247 -2205306 - SVA Other Other -339 1047 1 288 245 21 165 chr11 148578247 148578352 -2205201 + MIR SINE MIR 88 206 -56 269 26 0 26 chr11 148578395 148578434 -2205119 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1730 151 7 14 chr11 148578437 148578721 -2204832 - AluSx SINE Alu -30 282 1 21 35 0 35 chr11 148578745 148578761 -2204792 + AT_rich Low_complexity Low_complexity 1 16 -39 2183 128 0 0 chr11 148578761 148579073 -2204480 - AluSx SINE Alu 0 312 1 2249 95 3 3 chr11 148579083 148579377 -2204176 - AluSg SINE Alu -14 296 3 21 35 0 35 chr11 148579377 148579406 -2204147 + AT_rich Low_complexity Low_complexity 25 55 0 208 313 11 50 chr11 148579547 148579576 -2203977 + (CATATA)n Simple_repeat Simple_repeat 2 31 -145 2115 106 0 11 chr11 148579576 148579859 -2203694 + AluSq SINE Alu 1 280 -33 189 0 0 0 chr11 148579860 148579881 -2203672 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 208 313 11 50 chr11 148579881 148580031 -2203522 + (CATATA)n Simple_repeat Simple_repeat 30 176 0 1385 146 87 66 chr11 148580454 148580741 -2202812 + AluJo SINE Alu 9 301 -11 1965 140 0 7 chr11 148580909 148581188 -2202365 + AluSx SINE Alu 3 279 -33 333 0 0 0 chr11 148581188 148581225 -2202328 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 198 0 0 0 chr11 148581225 148581247 -2202306 + (CA)n Simple_repeat Simple_repeat 1 22 0 516 167 0 0 chr11 148581833 148581923 -2201630 - MER3 DNA MER1_type 0 209 120 786 170 7 14 chr11 148581925 148582066 -2201487 + FLAM_C SINE Alu 2 141 -2 461 194 32 0 chr11 148582066 148582159 -2201394 - MER3 DNA MER1_type -80 129 34 2208 106 10 0 chr11 148582268 148582560 -2200993 + AluSq SINE Alu 1 295 -18 219 173 0 0 chr11 148582560 148582612 -2200941 + G-rich Low_complexity Low_complexity 4 55 0 216 111 0 0 chr11 148582630 148582666 -2200887 + (GGAGA)n Simple_repeat Simple_repeat 2 37 0 378 313 31 44 chr11 148584285 148584445 -2199108 + MER5A DNA MER1_type 25 182 -7 1842 158 14 30 chr11 148584827 148585124 -2198429 + AluJo SINE Alu 1 292 -20 1029 258 83 45 chr11 148585516 148586031 -2197522 - L1MC4a LINE L1 -1636 6172 5638 1317 212 120 22 chr11 148586432 148586791 -2196762 - MSTD LTR MaLR -2 394 1 1646 156 39 8 chr11 148586895 148587152 -2196401 - AluSx SINE Alu -47 265 1 2271 82 4 0 chr11 148587678 148587983 -2195570 + AluSg SINE Alu 1 306 0 1902 138 43 20 chr11 148589432 148589736 -2193817 - AluJo SINE Alu -1 311 1 221 373 0 0 chr11 148589876 148589968 -2193585 + MIR SINE MIR 33 124 -84 361 118 0 0 chr11 148589969 148590020 -2193533 + AluSq/x SINE Alu 67 117 -186 354 111 0 0 chr11 148590019 148590073 -2193480 - Alu SINE Alu 0 302 249 * 2212 150 14 69 chr11 148590095 148590178 -2193375 + L1MB8 LINE L1 5703 5789 -389 1358 165 173 0 chr11 148590178 148590433 -2193120 + AluJo SINE Alu 1 299 -3 2212 150 14 69 chr11 148590433 148590841 -2192712 + L1MB8 LINE L1 5789 6167 -11 1504 171 74 37 chr11 148590982 148591280 -2192273 - AluJb SINE Alu -3 309 1 372 298 150 35 chr11 148591759 148592105 -2191448 + MLT1K LTR MaLR 195 580 -8 287 203 13 38 chr11 148592143 148592222 -2191331 + MIR SINE MIR 185 261 -1 2273 112 0 10 chr11 148592275 148592578 -2190975 - AluSx SINE Alu -11 301 2 213 39 0 0 chr11 148592586 148592612 -2190941 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 816 186 7 0 chr11 148592653 148592793 -2190760 - AluJo SINE Alu -85 227 87 275 179 90 0 chr11 148593034 148593101 -2190452 - L1ME LINE L1 -420 5701 5629 591 191 23 61 chr11 148593685 148593816 -2189737 - FLAM_A SINE Alu -7 126 1 272 314 114 14 chr11 148593881 148594091 -2189462 + L3 LINE CR1 993 1223 -354 2123 122 7 3 chr11 148594099 148594393 -2189160 + AluSx SINE Alu 1 295 -17 719 109 36 7 chr11 148594396 148594533 -2189020 + GA-rich Low_complexity Low_complexity 4 144 0 1998 114 24 14 chr11 148595022 148595319 -2188234 + AluSq SINE Alu 1 300 -13 410 289 69 31 chr11 148595404 148595563 -2187990 + MER69A DNA AcHobo 1 165 -12 1022 156 6 33 chr11 148596031 148596211 -2187342 + FAM SINE Alu 1 175 0 1952 142 3 17 chr11 148596216 148596564 -2186989 + AluJb SINE Alu 6 312 0 403 272 20 34 chr11 148596794 148596941 -2186612 + MIR SINE MIR 7 151 -111 208 301 182 34 chr11 148596965 148597261 -2186292 + L2 LINE L2 1618 1957 -1357 388 286 75 104 chr11 148598207 148598553 -2185000 - L2 LINE L2 -5 3267 2932 2435 73 0 19 chr11 148598739 148599053 -2184500 - AluY SINE Alu -3 308 1 2040 97 82 0 chr11 148599333 148599612 -2183941 - AluSx SINE Alu -8 304 3 983 201 193 8 chr11 148599712 148599961 -2183592 + AluSg SINE Alu 2 296 -4 194 61 0 30 chr11 148600213 148600246 -2183307 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 2004 102 0 66 chr11 148600248 148600551 -2183002 - AluSx SINE Alu -29 283 1 1250 190 22 123 chr11 148601279 148601695 -2181858 - MLT1A2 LTR MaLR 0 374 1 24 32 0 0 chr11 148603788 148603819 -2179734 + GC_rich Low_complexity Low_complexity 1 31 0 211 211 28 28 chr11 148604302 148604373 -2179180 + G-rich Low_complexity Low_complexity 6 76 0 2438 66 7 7 chr11 148605867 148606169 -2177384 - AluSx SINE Alu -10 302 1 547 147 29 0 chr11 148606297 148606399 -2177154 + MER3 DNA MER1_type 65 122 -87 * 962 155 40 0 chr11 148606398 148606572 -2176981 + MER3 DNA MER1_type 2232 2412 0 248 296 307 0 chr11 148606672 148606861 -2176692 + HAL1 LINE L1 1198 1444 -1063 2175 119 0 10 chr11 148606862 148607172 -2176381 - AluSg SINE Alu -3 307 1 2448 82 3 0 chr11 148607175 148607480 -2176073 - AluSp SINE Alu -7 306 1 1090 110 0 0 chr11 148607480 148607616 -2175937 - AluSq/x SINE Alu -177 136 1 1034 264 191 41 chr11 148607653 148608244 -2175309 + HAL1 LINE L1 1473 1974 -533 1264 201 112 8 chr11 148608244 148608503 -2175050 + AluJo SINE Alu 1 286 -26 1034 264 191 41 chr11 148608503 148608811 -2174742 + HAL1 LINE L1 1974 2507 0 189 250 20 90 chr11 148609011 148609111 -2174442 - L2 LINE L2 -44 3228 3136 1466 205 20 0 chr11 148609563 148609856 -2173697 + AluJo SINE Alu 1 299 -13 1442 196 67 11 chr11 148610531 148610816 -2172737 + AluJb SINE Alu 1 301 -11 2446 75 0 0 chr11 148611237 148611531 -2172022 + AluSc SINE Alu 1 294 -15 194 313 0 0 chr11 148612493 148612560 -2170993 - MIR SINE MIR -126 136 70 301 301 24 16 chr11 148612998 148613121 -2170432 - MIR SINE MIR -22 240 117 662 242 33 6 chr11 148613152 148613334 -2170219 - MIR SINE MIR -20 242 56 2376 64 3 35 chr11 148614291 148614605 -2168948 - AluY SINE Alu -7 304 1 1355 215 10 13 chr11 148614769 148615080 -2168473 - L1MD3 LINE L1 -9 7986 7677 301 239 57 11 chr11 148615113 148615201 -2168352 - L1MC4 LINE L1 -679 7363 7272 2293 97 3 10 chr11 148617326 148617637 -2165916 - AluSx SINE Alu -3 309 1 1614 191 7 14 chr11 148618250 148618544 -2165009 + AluJb SINE Alu 1 292 -20 222 128 0 0 chr11 148618780 148618819 -2164734 + (TC)n Simple_repeat Simple_repeat 2 40 0 2353 86 3 3 chr11 148618821 148619123 -2164430 - AluSp SINE Alu -11 302 1 271 313 99 44 chr11 148619438 148619710 -2163843 + L2 LINE L2 2555 2841 -473 2076 123 0 3 chr11 148619815 148620107 -2163446 - AluSg SINE Alu -19 291 1 259 340 21 10 chr11 148620208 148620305 -2163248 + L2 LINE L2 3159 3256 -16 8695 46 12 0 chr11 148620487 148622327 -2161226 + L1PA5 LINE L1 4289 6153 -1 675 167 33 0 chr11 148623125 148623245 -2160308 - FLAM_C SINE Alu -11 132 9 1348 238 53 6 chr11 148625226 148625545 -2158008 + MER119 DNA MER1_type 2 335 -248 591 209 85 0 chr11 148625583 148625712 -2157841 + MER119 DNA MER1_type 431 570 -13 1011 188 74 108 chr11 148626895 148627318 -2156235 - L1MD3 LINE L1 0 8036 7642 583 81 0 0 chr11 148627379 148627453 -2156100 - U4 snRNA snRNA -71 74 1 434 222 290 13 chr11 148627453 148627609 -2155944 - L1MC4 LINE L1 -364 7631 7388 * 1116 208 26 23 chr11 148627608 148627872 -2155681 - L1MC4 LINE L1 -1031 7011 6747 23 0 0 0 chr11 148628312 148628335 -2155218 + AT_rich Low_complexity Low_complexity 1 23 0 657 112 0 0 chr11 148628335 148628433 -2155120 - L1MA3 LINE L1 0 6305 6208 455 240 86 60 chr11 148629417 148629600 -2153953 - L1ME4a LINE L1 -271 5850 5655 1541 164 66 3 chr11 148629600 148629887 -2153666 - AluSx SINE Alu -5 307 3 455 240 86 60 chr11 148629887 148629936 -2153617 - L1ME4a LINE L1 -466 5655 5609 1995 147 3 3 chr11 148629965 148630257 -2153296 + AluSx SINE Alu 1 292 -20 24 0 0 0 chr11 148630387 148630411 -2153142 + AT_rich Low_complexity Low_complexity 1 24 0 523 89 34 2 chr11 148630562 148630741 -2152812 - AluSg/x SINE Alu -15 295 81 2282 86 0 16 chr11 148630906 148631209 -2152344 + AluY SINE Alu 1 298 -13 458 213 23 0 chr11 148631501 148631620 -2151933 - MIR SINE MIR -40 168 42 260 274 63 40 chr11 148632536 148632711 -2150842 - L1MC5 LINE L1 -51 7910 7732 952 258 227 32 chr11 148632764 148633350 -2150203 - L1MC4 LINE L1 -43 7999 7300 28 61 0 0 chr11 148634540 148634589 -2148964 + AT_rich Low_complexity Low_complexity 1 49 0 303 146 0 0 chr11 148634853 148634908 -2148645 + (GAA)n Simple_repeat Simple_repeat 2 56 0 331 233 0 11 chr11 148635150 148635240 -2148313 - L1MC4 LINE L1 -473 7569 7481 224 208 0 0 chr11 148635468 148635516 -2148037 + GA-rich Low_complexity Low_complexity 1 48 0 313 157 57 14 chr11 148640483 148640553 -2143000 + MER113 DNA MER1_type? 349 421 -100 330 331 55 8 chr11 148640621 148640748 -2142805 - MIR SINE MIR -74 188 56 330 87 0 0 chr11 148641755 148641801 -2141752 - MADE1 DNA Mariner -34 46 1 1942 160 3 0 chr11 148644267 148644567 -2138986 - AluSx SINE Alu -11 301 1 22 0 0 0 chr11 148645773 148645795 -2137758 + AT_rich Low_complexity Low_complexity 1 22 0 1938 169 0 0 chr11 148646293 148646588 -2136965 - AluJb SINE Alu -15 297 3 410 286 178 47 chr11 148647524 148648208 -2135345 - L2 LINE L2 -338 2976 2203 973 222 41 22 chr11 148648215 148648485 -2135068 + L1MA9 LINE L1 6004 6278 -34 224 186 23 0 chr11 148649015 148649058 -2134495 - L2 LINE L2 -19 3294 3251 579 266 81 27 chr11 148649495 148649717 -2133836 - MIR SINE MIR 0 262 29 352 323 90 32 chr11 148651051 148651240 -2132313 - MIR SINE MIR -38 224 25 2023 124 6 41 chr11 148651749 148652064 -2131489 - AluJb SINE Alu -6 306 3 2500 66 0 0 chr11 148654184 148654472 -2129081 - AluY SINE Alu -21 290 3 2051 151 3 6 chr11 148655869 148656181 -2127372 - AluSx SINE Alu -1 311 1 213 239 43 0 chr11 148656217 148656263 -2127290 - L3b LINE CR1 -5 1578 1531 2219 97 30 13 chr11 148659023 148659323 -2124230 - AluSg SINE Alu -5 305 1 2402 90 0 3 chr11 148660527 148660827 -2122726 - AluY SINE Alu -12 299 1 2012 116 34 3 chr11 148660899 148661191 -2122362 - AluSx SINE Alu -11 301 1 304 248 214 0 chr11 148661244 148661454 -2122099 - Charlie7 DNA MER1_type -31 2581 2327 1785 178 126 14 chr11 148661479 148661531 -2122022 - L1MC3 LINE L1 -171 7614 7569 2490 81 3 3 chr11 148661531 148661840 -2121713 - AluSp SINE Alu -4 309 1 1785 178 126 14 chr11 148661840 148662231 -2121322 - L1MC3 LINE L1 -216 7569 7121 392 211 28 9 chr11 148662240 148662349 -2121204 - Charlie7 DNA MER1_type -297 2315 2205 523 167 108 0 chr11 148662351 148662453 -2121100 + L1MA10 LINE L1 6215 6327 -7 1742 140 78 0 chr11 148662462 148662475 -2121078 - AluSx SINE Alu -19 293 282 198 0 0 0 chr11 148662475 148662497 -2121056 + (TG)n Simple_repeat Simple_repeat 1 22 0 1742 140 78 0 chr11 148662497 148662754 -2120799 - AluSx SINE Alu -30 282 2 1054 238 99 14 chr11 148662942 148663304 -2120249 - Charlie7 DNA MER1_type -1659 953 561 1041 269 93 39 chr11 148663608 148664092 -2119461 + LTR67 LTR ERVL 24 533 -24 756 267 127 35 chr11 148664210 148664697 -2118856 + L1MC4a LINE L1 6476 7007 -801 1385 139 0 0 chr11 148664715 148664916 -2118637 + AluSg/x SINE Alu 102 302 -10 1109 255 57 34 chr11 148664921 148665388 -2118165 + L1MC5 LINE L1 7036 7515 -441 2164 114 7 0 chr11 148665388 148665707 -2117846 + AluSx SINE Alu 1 321 0 2359 106 0 3 chr11 148665720 148666031 -2117522 + AluSg SINE Alu 1 310 0 1497 128 6 113 chr11 148666134 148666461 -2117092 + AluJb SINE Alu 5 296 -6 2521 66 0 19 chr11 148666462 148666779 -2116774 + AluY SINE Alu 1 311 0 1476 88 0 5 chr11 148666921 148667113 -2116440 - AluSg/x SINE Alu -5 304 114 2435 82 3 0 chr11 148667256 148667549 -2116004 + AluSp SINE Alu 3 296 -17 355 311 61 53 chr11 148667707 148667971 -2115582 - L2 LINE L2 -648 2666 2401 901 179 6 6 chr11 148668075 148668243 -2115310 - FAM SINE Alu -7 168 1 2314 106 0 22 chr11 148668506 148668826 -2114727 + AluSq SINE Alu 1 313 0 214 371 82 0 chr11 148669842 148670012 -2113541 + MIR SINE MIR 5 188 -74 22 0 0 0 chr11 148670387 148670409 -2113144 + AT_rich Low_complexity Low_complexity 1 22 0 2024 114 25 14 chr11 148670419 148670700 -2112853 - AluSx SINE Alu 0 312 29 199 330 68 0 chr11 148670775 148670863 -2112690 - L2 LINE L2 0 3272 3179 434 244 9 35 chr11 148670958 148671073 -2112480 - MLT1I LTR MaLR -2 407 296 482 274 17 0 chr11 148671185 148671302 -2112251 - MLT1I LTR MaLR -279 130 12 275 284 127 15 chr11 148671698 148671832 -2111721 - L2 LINE L2 -802 2512 2364 311 273 57 0 chr11 148671848 148671936 -2111617 + L2 LINE L2 3210 3302 -11 260 138 31 46 chr11 148672631 148672696 -2110857 + (CGGG)n Simple_repeat Simple_repeat 2 65 0 24 53 0 0 chr11 148672839 148672877 -2110676 + GC_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr11 148673163 148673186 -2110367 + GC_rich Low_complexity Low_complexity 1 23 0 301 284 52 45 chr11 148675569 148675703 -2107850 - L2 LINE L2 0 3272 3138 354 282 53 15 chr11 148675870 148676001 -2107552 + MIR SINE MIR 77 212 -50 663 163 0 44 chr11 148676372 148676507 -2107046 - FLAM_A SINE Alu -1 132 4 2087 142 3 0 chr11 148677381 148677676 -2105877 - AluJb SINE Alu -16 296 1 315 0 0 0 chr11 148677676 148677711 -2105842 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2304 81 7 0 chr11 148677711 148677994 -2105559 - AluSp SINE Alu -28 285 1 555 244 0 0 chr11 148678000 148678119 -2105434 - MIR SINE MIR -108 154 36 194 140 0 40 chr11 148678586 148678636 -2104917 + (ATGGTG)n Simple_repeat Simple_repeat 6 53 0 363 284 179 25 chr11 148678705 148678867 -2104686 - MIR SINE MIR -70 192 6 393 353 86 5 chr11 148678906 148679093 -2104460 + L3 LINE CR1 243 444 -1133 489 336 45 16 chr11 148679344 148679591 -2103962 + L3 LINE CR1 520 773 -804 2282 114 0 0 chr11 148679885 148680175 -2103378 + AluSx SINE Alu 1 290 -22 2163 125 3 3 chr11 148680675 148680971 -2102582 - AluSx SINE Alu -16 296 1 433 315 62 7 chr11 148680971 148681117 -2102436 - L1ME4a LINE L1 -234 5887 5734 381 321 113 41 chr11 148681131 148681520 -2102033 + L3 LINE CR1 975 1391 -186 1455 215 117 52 chr11 148681885 148682049 -2101504 + L1MD2 LINE L1 5769 5921 -438 2462 86 7 0 chr11 148682049 148682351 -2101202 - AluSx SINE Alu -8 304 1 1455 215 117 52 chr11 148682351 148682726 -2100827 + L1MD2 LINE L1 5921 6343 -16 268 173 0 0 chr11 148683850 148683902 -2099651 - L1MA10 LINE L1 -4 6330 6279 444 185 0 12 chr11 148684009 148684090 -2099463 - LTR62 LTR ERVK -451 268 189 479 228 18 0 chr11 148684116 148684230 -2099323 - L1MA10 LINE L1 -51 6283 6168 23 33 0 0 chr11 148684233 148684263 -2099290 + AT_rich Low_complexity Low_complexity 1 30 0 813 198 11 32 chr11 148684293 148684480 -2099073 - L1M3 LINE L1 -366 5802 5620 3799 138 43 45 chr11 148684533 148685057 -2098496 - LTR62 LTR ERVK -1 718 195 1820 141 46 23 chr11 148685057 148685362 -2098191 - AluJo SINE Alu 0 312 1 2617 68 0 0 chr11 148685365 148685673 -2097880 - AluY SINE Alu -3 308 1 3799 138 43 45 chr11 148685673 148685862 -2097691 - LTR62 LTR ERVK -526 193 2 231 136 85 17 chr11 148686020 148686079 -2097474 + MIR SINE MIR 90 152 -110 2309 91 7 0 chr11 148686272 148686568 -2096985 + AluSx SINE Alu 1 298 -14 320 226 95 51 chr11 148687302 148687439 -2096114 - MIR3 SINE MIR -62 146 4 217 49 0 49 chr11 148687448 148687489 -2096064 + (TGGGGG)n Simple_repeat Simple_repeat 1 39 0 2032 126 108 18 chr11 148687508 148687897 -2095656 + LTR62 LTR ERVK 2 425 -294 2406 101 0 13 chr11 148688324 148688640 -2094913 - AluSp SINE Alu -1 312 1 2183 101 4 7 chr11 148688641 148688919 -2094634 - AluSx SINE Alu -35 277 1 2530 84 0 0 chr11 148689333 148689644 -2093909 - AluY SINE Alu 0 311 1 2367 110 0 0 chr11 148689745 148690053 -2093500 - AluY SINE Alu -2 309 2 2311 89 7 0 chr11 148690239 148690532 -2093021 + AluSq SINE Alu 1 295 -18 2841 145 64 2 chr11 148690853 148691351 -2092202 - LTR62 LTR ERVK -4 715 187 426 55 0 0 chr11 148691349 148691404 -2092149 - LTR62 LTR ERVK -664 55 1 * 212 301 24 57 chr11 148692082 148692205 -2091348 + MER5B DNA MER1_type 7 125 -53 312 319 0 0 chr11 148694652 148694743 -2088810 + MIR3 SINE MIR 77 167 -41 198 229 49 16 chr11 148695023 148695084 -2088469 + MIR SINE MIR 32 94 -114 1353 175 27 93 chr11 148695262 148695594 -2087959 - AluJb SINE Alu -2 310 1 2233 111 3 3 chr11 148695609 148695906 -2087647 - AluSx SINE Alu -15 297 1 2431 91 0 10 chr11 148695908 148696216 -2087337 - AluSq SINE Alu -8 305 1 291 295 21 11 chr11 148696277 148696372 -2087181 + HAL1 LINE L1 814 909 -1598 853 122 15 0 chr11 148696384 148696515 -2087038 + FLAM_A SINE Alu 1 133 0 897 219 45 0 chr11 148696518 148696764 -2086789 - L1M4 LINE L1 -1553 4593 4337 * 1158 288 65 17 chr11 148696760 148697235 -2086318 + L1ME1 LINE L1 5664 6161 -5 292 211 48 19 chr11 148697245 148697349 -2086204 + HAL1 LINE L1 1096 1202 -1305 * 313 318 11 37 chr11 148697342 148697531 -2086022 - HAL1 LINE L1 -1055 1452 1269 818 252 280 30 chr11 148697683 148698361 -2085192 + HAL1 LINE L1 456 1303 -1204 1633 178 0 11 chr11 148698361 148698625 -2084928 + AluJo SINE Alu 35 295 -17 1293 256 125 67 chr11 148698635 148698759 -2084794 + HAL1 LINE L1 1429 1544 -963 2317 121 0 0 chr11 148698759 148699064 -2084489 - AluSx SINE Alu -7 305 1 1293 256 125 67 chr11 148699064 148699854 -2083699 + HAL1 LINE L1 1544 2396 -111 1780 203 135 28 chr11 148703943 148704028 -2079525 - MER74A LTR ERVL -1 557 483 1692 134 73 0 chr11 148704028 148704289 -2079264 + AluJb SINE Alu 4 283 -29 1780 203 135 28 chr11 148704289 148704364 -2079189 - MER74A LTR ERVL -75 483 417 2429 96 0 0 chr11 148704364 148704667 -2078886 + AluSx SINE Alu 1 303 -9 1780 203 135 28 chr11 148704667 148705008 -2078545 - MER74A LTR ERVL -141 417 1 334 264 71 52 chr11 148705237 148705351 -2078202 - L1ME4a LINE L1 -4 6117 5998 2293 101 0 10 chr11 148705351 148705648 -2077905 - AluSx SINE Alu -18 294 1 334 264 71 52 chr11 148705648 148705688 -2077865 - L1ME4a LINE L1 -123 5998 5960 991 242 22 5 chr11 148705835 148706058 -2077495 + MIR SINE MIR 2 228 -34 1416 150 83 4 chr11 148706060 148706313 -2077240 - AluJo SINE Alu -19 293 21 2258 92 7 0 chr11 148706433 148706726 -2076827 - AluSx SINE Alu -17 295 1 528 206 0 0 chr11 148707717 148707848 -2075705 + (TG)n Simple_repeat Simple_repeat 1 131 0 1920 169 10 3 chr11 148707921 148708228 -2075325 + AluJo SINE Alu 1 309 -3 223 308 51 28 chr11 148708283 148708430 -2075123 + MIR SINE MIR 38 147 -61 2375 100 0 0 chr11 148708528 148708828 -2074725 + AluSg SINE Alu 1 300 -10 2199 101 0 10 chr11 148708830 148709151 -2074402 + AluSx SINE Alu 1 318 0 189 0 0 0 chr11 148710473 148710494 -2073059 + (CAGGG)n Simple_repeat Simple_repeat 1 21 0 359 314 31 21 chr11 148712030 148712224 -2071329 + MER91A DNA MER1_type 1 196 0 2429 119 57 2 chr11 148713200 148713602 -2069951 - MSTB LTR MaLR 0 426 3 284 259 91 49 chr11 148713706 148713849 -2069704 - MIR SINE MIR -91 171 23 483 326 71 1 chr11 148713860 148714063 -2069490 + MIR SINE MIR 29 243 -19 1673 183 7 4 chr11 148714559 148714832 -2068721 - AluJo SINE Alu -38 274 1 1201 214 49 4 chr11 148714841 148715108 -2068445 - L1MD3 LINE L1 -1063 6932 6654 468 280 115 6 chr11 148715681 148715863 -2067690 + MIR SINE MIR 40 241 -21 2384 94 0 7 chr11 148716601 148716909 -2066644 - AluSq SINE Alu -7 306 1 2196 131 0 7 chr11 148717484 148717781 -2065772 + AluSx SINE Alu 1 295 -17 239 249 65 142 chr11 148718012 148718090 -2065463 - L1MC4 LINE L1 -1 8041 7959 2179 89 3 10 chr11 148718090 148718382 -2065171 - AluSg SINE Alu -20 290 1 239 249 65 142 chr11 148718382 148718564 -2064989 - L1MC4 LINE L1 -83 7959 7801 2228 111 20 0 chr11 148718654 148718951 -2064602 - AluSg SINE Alu -7 303 1 1228 274 99 79 chr11 148718967 148719512 -2064041 - L1MC4 LINE L1 -356 7686 7114 2365 110 0 0 chr11 148719512 148719822 -2063731 - AluSx SINE Alu -2 310 1 1228 274 99 79 chr11 148719822 148720177 -2063376 - L1MC4 LINE L1 -928 7114 6768 2214 140 0 0 chr11 148720226 148720533 -2063020 + AluSx SINE Alu 4 310 -2 2215 99 0 11 chr11 148720745 148721051 -2062502 + AluSg SINE Alu 1 303 0 345 318 46 7 chr11 148721774 148721927 -2061626 + MIR SINE MIR 3 154 -62 1791 132 68 14 chr11 148723825 148724121 -2059432 - AluJo SINE Alu 0 312 1 355 233 60 53 chr11 148725082 148725232 -2058321 + MER5A DNA MER1_type 1 151 -38 267 173 0 0 chr11 148726671 148726723 -2056830 + (TG)n Simple_repeat Simple_repeat 2 53 0 581 225 7 0 chr11 148726901 148727052 -2056501 + (TG)n Simple_repeat Simple_repeat 2 153 0 340 129 14 14 chr11 148727078 148727148 -2056405 + (TG)n Simple_repeat Simple_repeat 2 71 0 368 283 133 33 chr11 148727285 148727465 -2056088 - MIR SINE MIR -44 218 21 1691 146 26 43 chr11 148727659 148727961 -2055592 + AluJo SINE Alu 2 298 -14 2308 120 0 0 chr11 148731133 148731434 -2052119 - AluSx SINE Alu -11 301 1 2790 36 0 0 chr11 148732492 148732800 -2050753 - AluY SINE Alu -3 308 1 2097 83 0 4 chr11 148734609 148734875 -2048678 - AluSq SINE Alu -23 290 26 186 366 69 40 chr11 148735759 148736035 -2047518 - L2 LINE L2 -55 3217 2934 341 256 58 0 chr11 148736428 148736514 -2047039 - MIR SINE MIR -15 247 157 260 357 88 6 chr11 148736661 148736832 -2046721 - L2 LINE L2 -569 2745 2561 2290 100 7 0 chr11 148737358 148737657 -2045896 + AluY SINE Alu 1 301 -10 1711 150 11 38 chr11 148738573 148738860 -2044693 - AluJb SINE Alu -32 280 2 27 0 0 0 chr11 148740938 148740965 -2042588 + AT_rich Low_complexity Low_complexity 1 27 0 198 0 0 0 chr11 148743367 148743389 -2040164 + (T)n Simple_repeat Simple_repeat 1 22 0 189 229 0 0 chr11 148744596 148744644 -2038909 + T-rich Low_complexity Low_complexity 2 49 0 1688 167 3 21 chr11 148745697 148745984 -2037569 + AluJo SINE Alu 25 306 -6 27 29 0 0 chr11 148746854 148746888 -2036665 + AT_rich Low_complexity Low_complexity 1 34 0 344 242 129 48 chr11 148747873 148747997 -2035556 + L1ME4a LINE L1 5982 6115 -6 721 191 0 0 chr11 148748507 148748633 -2034920 + FAM SINE Alu 1 40 -9 1840 97 127 15 chr11 148748672 148748940 -2034613 + AluSg SINE Alu 1 298 -12 239 203 78 0 chr11 148749100 148749164 -2034389 - MIR SINE MIR -99 109 41 1200 281 76 50 chr11 148751767 148752332 -2031221 - L2 LINE L2 -469 2845 2266 659 276 96 0 chr11 148752335 148752534 -2031019 - MER58A DNA MER1_type -6 218 1 2480 54 3 0 chr11 148752996 148753294 -2030259 - AluY SINE Alu -12 299 1 366 198 35 60 chr11 148753780 148753896 -2029657 + MER58B DNA MER1_type 223 335 -6 743 233 128 90 chr11 148753918 148754506 -2029047 - L1ME3A LINE L1 -219 5934 5325 334 290 88 9 chr11 148754507 148754724 -2028829 - L1ME3A LINE L1 -834 5295 5062 512 267 53 15 chr11 148754864 148755070 -2028483 - L1ME3A LINE L1 -1301 4828 4615 29 60 0 0 chr11 148755492 148755542 -2028011 + AT_rich Low_complexity Low_complexity 1 50 0 344 261 90 0 chr11 148755542 148755653 -2027900 - L1ME3A LINE L1 -4761 1549 1429 315 257 108 21 chr11 148755748 148756047 -2027506 - L1MDa LINE L1 -4910 1209 871 402 303 73 76 chr11 148756049 148756405 -2027148 - L1MDa LINE L1 -5221 898 544 632 276 11 6 chr11 148756636 148756825 -2026728 - L1ME LINE L1 -512 5650 5462 2527 71 0 0 chr11 148757340 148757650 -2025903 + AluY SINE Alu 1 310 -1 279 203 0 0 chr11 148759215 148759274 -2024279 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 249 250 0 15 chr11 148759611 148759679 -2023874 - MIR SINE MIR -16 246 180 1181 187 172 61 chr11 148759738 148760214 -2023339 + MER90 LTR ERV1 79 607 -7 410 226 30 46 chr11 148760639 148760826 -2022727 + L1MB8 LINE L1 5834 6020 -163 2178 129 3 0 chr11 148761314 148761623 -2021930 + AluSx SINE Alu 1 310 -2 2193 132 0 0 chr11 148761776 148762072 -2021481 + AluSx SINE Alu 1 296 -16 19602 136 23 106 chr11 148762461 148765580 -2017973 + L1PA5 LINE L1 12 3388 -2758 14795 41 1 7 chr11 148765580 148768180 -2015373 + L1PA5 LINE L1 3548 6143 -11 19602 136 23 106 chr11 148768180 148769350 -2014203 + L1PA5 LINE L1 3388 3860 -2286 2167 83 73 7 chr11 148769350 148769638 -2013915 + AluSc SINE Alu 1 307 -2 19602 136 23 106 chr11 148769638 148770167 -2013386 + L1PA5 LINE L1 3860 4431 -1715 251 100 33 17 chr11 148770154 148770214 -2013339 + L1PA8 LINE L1 6112 6172 0 * 1230 219 39 73 chr11 148770225 148770663 -2012890 + MLT1C LTR MaLR 45 467 0 391 207 110 30 chr11 148771018 148771182 -2012371 - MER104 DNA MER2_type 0 180 4 272 268 189 24 chr11 148771507 148771634 -2011919 + MLT1J LTR MaLR 1 148 -363 2252 84 33 0 chr11 148771862 148772194 -2011359 + L1PA7 LINE L1 4316 4658 -1488 5339 82 0 1 chr11 148772198 148772916 -2010637 + L1PA7 LINE L1 5436 6152 -2 211 71 48 0 chr11 148772958 148773000 -2010553 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 247 325 119 87 chr11 148773115 148773542 -2010011 + L2 LINE L2 2831 3271 -1 2152 92 3 0 chr11 148775083 148775391 -2008162 - AluSx SINE Alu 0 309 1 327 302 31 8 chr11 148775436 148775565 -2007988 - MIR SINE MIR -3 259 128 241 211 35 0 chr11 148775648 148775705 -2007848 + GA-rich Low_complexity Low_complexity 4 62 0 1872 152 0 10 chr11 148775729 148776019 -2007534 + AluJb SINE Alu 2 288 -24 849 267 33 17 chr11 148776959 148777199 -2006354 + MIR SINE MIR 13 256 -6 11742 135 20 7 chr11 148777723 148778182 -2005371 + Tigger1 DNA MER2_type 2 454 -1964 1808 122 8 0 chr11 148778182 148778429 -2005124 - AluSx SINE Alu -15 297 49 11742 135 20 7 chr11 148778429 148779918 -2003635 + Tigger1 DNA MER2_type 454 1975 -443 1712 180 7 0 chr11 148779936 148780225 -2003328 + AluJb SINE Alu 1 291 -21 757 99 23 30 chr11 148780232 148780363 -2003190 + Tigger1 DNA MER2_type 813 942 -1476 1455 175 67 42 chr11 148780365 148780650 -2002903 - AluJo SINE Alu -19 293 2 1142 147 15 144 chr11 148780651 148780734 -2002819 + Tigger1 DNA MER2_type 1949 2041 -377 2090 100 13 32 chr11 148780734 148781043 -2002510 + AluSx SINE Alu 1 303 -9 1142 147 15 144 chr11 148781043 148781064 -2002489 + Tigger1 DNA MER2_type 2041 2063 -355 640 160 80 32 chr11 148781064 148781189 -2002364 + FLAM_C SINE Alu 1 131 -2 1142 147 15 144 chr11 148781189 148781410 -2002143 + Tigger1 DNA MER2_type 2063 2233 -185 452 238 139 0 chr11 148781426 148781527 -2002026 + FLAM_A SINE Alu 1 115 -18 2082 113 0 3 chr11 148781529 148781832 -2001721 - AluSx SINE Alu 0 302 1 2118 94 7 0 chr11 148781962 148782237 -2001316 + AluSq SINE Alu 2 278 -35 400 291 115 70 chr11 148782613 148782857 -2000696 + MIR SINE MIR 5 259 -3 190 167 21 83 chr11 148783273 148783321 -2000232 - L2 LINE L2 -966 2348 2304 276 213 254 25 chr11 148783355 148783477 -2000076 - MIR SINE MIR -28 234 85 307 291 24 39 chr11 148783750 148783877 -1999676 - L2 LINE L2 -934 2380 2256 592 198 101 54 chr11 148784232 148784459 -1999094 + L1MC5 LINE L1 6666 6903 -905 7798 206 144 29 chr11 148784459 148784901 -1998652 - L1MB8 LINE L1 -172 6817 6427 2042 119 10 7 chr11 148784901 148785194 -1998359 + AluSx SINE Alu 1 294 -18 7798 206 144 29 chr11 148785194 148786251 -1997302 - L1MB8 LINE L1 -562 6427 5493 1964 156 0 19 chr11 148786251 148786565 -1996988 - AluJb SINE Alu -4 308 1 7798 206 144 29 chr11 148786565 148786706 -1996847 - L1MB8 LINE L1 -1496 5493 5370 1074 173 62 13 chr11 148786706 148786739 -1996814 - MER46A DNA MER2_type -2495 236 206 1857 137 6 60 chr11 148786739 148787054 -1996499 + AluSx SINE Alu 1 298 -14 1074 173 62 13 chr11 148787054 148787245 -1996308 - MER46A DNA MER2_type -2525 206 1 7798 206 144 29 chr11 148787245 148788313 -1995240 - L1MB8 LINE L1 -1619 5370 4427 794 161 0 0 chr11 148788313 148788431 -1995122 - FLAM_C SINE Alu -15 118 1 7798 206 144 29 chr11 148788431 148788590 -1994963 - L1MB8 LINE L1 -2562 4427 4288 2220 108 0 0 chr11 148788590 148788878 -1994675 - AluSc SINE Alu -21 288 1 7798 206 144 29 chr11 148788878 148788897 -1994656 - L1MB8 LINE L1 -2701 4288 4273 2218 118 3 19 chr11 148788897 148789210 -1994343 + AluSq SINE Alu 1 308 -5 7798 206 144 29 chr11 148789210 148789380 -1994173 - L1MB8 LINE L1 -2716 4273 4124 2245 116 13 0 chr11 148789380 148789681 -1993872 - AluSg SINE Alu -5 305 1 7798 206 144 29 chr11 148789681 148790270 -1993283 - L1MB8 LINE L1 -2865 4124 2784 876 259 57 26 chr11 148790639 148790991 -1992562 - L1MEc LINE L1 -4593 1803 1441 1526 159 34 28 chr11 148791077 148791404 -1992149 - MER47A DNA MER2_type -20 346 18 1811 222 43 54 chr11 148791413 148792212 -1991341 - L1MB8 LINE L1 -4557 2321 1152 341 245 101 125 chr11 148792215 148792329 -1991224 - L1MB8 LINE L1 -5768 1091 976 1994 148 0 0 chr11 148792329 148792613 -1990940 + AluSx SINE Alu 1 284 -28 288 0 0 0 chr11 148792613 148792645 -1990908 + (CCAA)n Simple_repeat Simple_repeat 2 33 0 341 245 101 125 chr11 148792645 148792737 -1990816 - L1MB8 LINE L1 -5881 978 889 935 312 67 19 chr11 148792757 148793129 -1990424 - L1MB8 LINE L1 -6052 807 418 330 263 20 45 chr11 148793143 148793341 -1990212 + L1M4 LINE L1 2140 2332 -3814 672 244 83 0 chr11 148793366 148793595 -1989958 + L1M4 LINE L1 2448 2695 -3451 272 194 0 28 chr11 148793596 148793668 -1989885 + L1M4 LINE L1 2783 2852 -3294 551 244 118 19 chr11 148793694 148793965 -1989588 - L1M4 LINE L1 -1868 4278 3981 697 228 41 14 chr11 148793969 148794188 -1989365 + L1M4 LINE L1 2862 3086 -3060 1955 143 14 0 chr11 148794190 148794518 -1989035 + AluJo SINE Alu 1 332 0 2158 74 0 68 chr11 148794531 148794857 -1988696 - AluY SINE Alu -7 304 1 546 183 0 21 chr11 148794916 148795009 -1988544 + FRAM SINE Alu 60 150 -26 1699 182 66 23 chr11 148795084 148795510 -1988043 - L1MB3 LINE L1 -9 6174 5725 694 200 0 23 chr11 148795799 148795929 -1987624 - FLAM_A SINE Alu -6 127 1 609 105 49 84 chr11 148795936 148795988 -1987565 - L1MB3 LINE L1 0 6183 6131 2163 119 3 16 chr11 148795988 148796298 -1987255 - AluSx SINE Alu -6 306 1 609 105 49 84 chr11 148796298 148796388 -1987165 - L1MB3 LINE L1 -52 6131 6046 2254 124 0 13 chr11 148796636 148796951 -1986602 + AluSx SINE Alu 1 311 -1 1017 90 0 8 chr11 148796958 148797092 -1986461 + AluSq/x SINE Alu 1 133 -179 2198 99 3 7 chr11 148797539 148797833 -1985720 + AluSg SINE Alu 1 293 -17 2473 93 0 0 chr11 148798232 148798544 -1985009 - AluSq SINE Alu -1 312 1 22 70 0 0 chr11 148799303 148799346 -1984207 + AT_rich Low_complexity Low_complexity 1 43 0 180 271 85 17 chr11 148799780 148799839 -1983714 + MIR SINE MIR 168 230 -32 225 339 52 43 chr11 148799954 148800184 -1983369 + L2 LINE L2 2269 2500 -814 1365 167 109 91 chr11 148800713 148801043 -1982510 - Charlie1b DNA MER1_type -2238 523 174 2293 108 0 13 chr11 148801043 148801358 -1982195 + AluSx SINE Alu 1 311 -1 1365 167 109 91 chr11 148801358 148801536 -1982017 - Charlie1b DNA MER1_type -2587 174 1 2433 88 3 0 chr11 148801568 148801875 -1981678 + AluSx SINE Alu 1 308 -4 2180 101 13 10 chr11 148802153 148802451 -1981102 + AluSx SINE Alu 1 299 -13 375 232 254 14 chr11 148802648 148802790 -1980763 + MLT1L LTR MaLR 407 582 -33 1359 239 95 22 chr11 148802933 148803384 -1980169 + MLT1D LTR MaLR 22 505 0 182 291 173 0 chr11 148803424 148803534 -1980019 + L2 LINE L2 2529 2657 -657 377 221 32 65 chr11 148803658 148803812 -1979741 - MIR SINE MIR -40 222 74 2316 88 0 23 chr11 148804084 148804389 -1979164 - AluSg SINE Alu -12 298 1 1524 213 126 9 chr11 148804765 148805201 -1978352 - L1ME1 LINE L1 -13 6153 5667 32 0 0 0 chr11 148805462 148805494 -1978059 + AT_rich Low_complexity Low_complexity 1 32 0 1748 171 7 39 chr11 148806132 148806442 -1977111 + AluJb SINE Alu 1 300 -12 1916 127 3 57 chr11 148806450 148806778 -1976775 + AluSq SINE Alu 1 312 0 2144 137 0 10 chr11 148807079 148807393 -1976160 + AluSx SINE Alu 1 311 -1 279 0 0 0 chr11 148807491 148807522 -1976031 + (A)n Simple_repeat Simple_repeat 1 31 0 841 74 107 0 chr11 148807580 148807702 -1975851 + MER85 DNA T2_type 1 135 -4 27 0 0 0 chr11 148810249 148810276 -1973277 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr11 148810308 148810329 -1973224 + AT_rich Low_complexity Low_complexity 1 21 0 1152 192 97 73 chr11 148810412 148810793 -1972760 + MLT1B LTR MaLR 1 390 0 594 196 261 75 chr11 148810804 148811102 -1972451 + L1M4 LINE L1 2155 2396 -3750 1884 166 3 7 chr11 148811102 148811397 -1972156 - AluJb SINE Alu -18 294 1 594 196 261 75 chr11 148811397 148811408 -1972145 + L1M4 LINE L1 2396 2404 -3742 2400 105 0 0 chr11 148811408 148811714 -1971839 - AluSx SINE Alu -5 307 2 594 196 261 75 chr11 148811714 148811762 -1971791 + L1M4 LINE L1 2404 2442 -3704 318 80 0 0 chr11 148811762 148811812 -1971741 + (CA)n Simple_repeat Simple_repeat 1 50 0 594 196 261 75 chr11 148811812 148811839 -1971714 + L1M4 LINE L1 2442 2613 -3533 1251 165 5 9 chr11 148811839 148812051 -1971502 + AluJb SINE Alu 86 296 -16 1087 170 50 35 chr11 148812093 148812352 -1971201 + L1M4 LINE L1 2675 2937 -3209 1232 126 0 6 chr11 148812353 148812527 -1971026 + AluSg/x SINE Alu 132 304 -8 4100 150 11 21 chr11 148812544 148813291 -1970262 + L1MB3 LINE L1 5435 6173 -10 484 203 160 5 chr11 148813304 148813491 -1970062 + L1M4 LINE L1 3047 3262 -2884 411 304 62 104 chr11 148813510 148814285 -1969268 - L2 LINE L2 -1219 2095 1354 1524 205 0 33 chr11 148814324 148814631 -1968922 + AluJb SINE Alu 1 297 -15 1698 169 20 30 chr11 148814719 148815020 -1968533 + AluJo SINE Alu 1 298 -14 565 264 92 17 chr11 148815040 148815279 -1968274 - MIR SINE MIR -4 258 2 1974 121 3 11 chr11 148815644 148815926 -1967627 + AluSx SINE Alu 1 280 -32 2330 88 3 22 chr11 148816306 148816625 -1966928 + AluSp SINE Alu 1 313 0 21 82 0 0 chr11 148817539 148817588 -1965965 + AT_rich Low_complexity Low_complexity 1 49 0 543 107 0 0 chr11 148817592 148817667 -1965886 - U3 snRNA snRNA -142 75 1 5850 153 26 26 chr11 148817740 148819173 -1964380 + L1PB2 LINE L1 4173 5618 -533 2300 95 7 0 chr11 148819173 148819469 -1964084 + AluSp SINE Alu 1 298 -15 5850 153 26 26 chr11 148819469 148820004 -1963549 + L1PB2 LINE L1 5618 6151 0 2337 95 0 3 chr11 148820097 148820393 -1963160 + AluY SINE Alu 3 297 -14 248 243 122 0 chr11 148820548 148820622 -1962931 + MER7A DNA MER2_type 1 81 -265 439 119 0 15 chr11 148820623 148820690 -1962863 - AluSx SINE Alu -25 287 222 559 84 0 0 chr11 148820690 148820761 -1962792 + L1P LINE L1 4710 4780 -1366 1587 132 0 0 chr11 148820765 148820978 -1962575 - AluSx SINE Alu -99 213 1 1784 134 0 0 chr11 148820979 148821240 -1962313 + MER7A DNA MER2_type 68 328 -18 568 285 89 8 chr11 148821342 148821577 -1961976 + MIR SINE MIR 8 261 -1 2866 115 5 16 chr11 148821826 148822261 -1961292 + MER83 LTR ERV1 1 430 -18 2077 88 9 85 chr11 148822546 148822874 -1960679 + AluSx SINE Alu 3 305 -7 609 196 0 19 chr11 148822999 148823106 -1960447 + FLAM_C SINE Alu 14 118 -25 2184 129 13 3 chr11 148823132 148823443 -1960110 + 7SLRNA srpRNA srpRNA 1 314 -6 1149 130 35 0 chr11 148823688 148823857 -1959696 - AluSg/x SINE Alu -5 305 131 1635 256 66 77 chr11 148823880 148824161 -1959392 + L1MC5 LINE L1 6123 6406 -1482 2026 147 0 7 chr11 148824161 148824461 -1959092 - AluJb SINE Alu -14 298 1 1635 256 66 77 chr11 148824461 148825542 -1958011 + L1MC5 LINE L1 6406 7472 -416 516 214 243 54 chr11 148825650 148825930 -1957623 + L1MC4 LINE L1 7619 7951 -91 352 286 101 21 chr11 148826102 148826291 -1957262 + MIR SINE MIR 33 236 -26 324 48 0 0 chr11 148826860 148826902 -1956651 + (TG)n Simple_repeat Simple_repeat 2 43 0 27 0 0 0 chr11 148826902 148826929 -1956624 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr11 148827329 148827352 -1956201 + GC_rich Low_complexity Low_complexity 1 23 0 32 57 0 0 chr11 148827387 148827440 -1956113 + GC_rich Low_complexity Low_complexity 1 53 0 181 104 0 83 chr11 148827730 148827778 -1955775 + (AGGGGG)n Simple_repeat Simple_repeat 3 46 0 207 116 0 47 chr11 148827779 148827822 -1955731 + (CCG)n Simple_repeat Simple_repeat 3 43 0 220 215 31 0 chr11 148827888 148827953 -1955600 + G-rich Low_complexity Low_complexity 5 71 0 4115 147 20 28 chr11 148829649 148830094 -1953459 - L1 LINE L1 -1396 4750 4310 1993 106 25 7 chr11 148830094 148830393 -1953160 + AluSg SINE Alu 2 305 0 4115 147 20 28 chr11 148830393 148830726 -1952827 - L1 LINE L1 -1836 4310 3976 1206 179 155 4 chr11 148830771 148831022 -1952531 - AluJo SINE Alu -10 292 4 287 318 215 19 chr11 148831748 148832069 -1951484 + L2 LINE L2 2465 2848 -466 2545 61 0 6 chr11 148832108 148832419 -1951134 - AluSc SINE Alu 0 309 1 2326 69 3 7 chr11 148832442 148832733 -1950820 - AluY SINE Alu -21 290 1 3072 127 38 4 chr11 148832734 148833213 -1950340 - Tigger1 DNA MER2_type -941 1477 983 * 3375 157 24 6 chr11 148833207 148833756 -1949797 - Tigger1 DNA MER2_type -1858 560 2 281 274 0 0 chr11 148833841 148833903 -1949650 - MLT1K LTR MaLR -326 262 201 1740 72 174 19 chr11 148833926 148834191 -1949362 + AluY SINE Alu 3 308 -3 21 0 0 0 chr11 148834654 148834675 -1948878 + AT_rich Low_complexity Low_complexity 1 21 0 4797 59 3 3 chr11 148835192 148835783 -1947770 - LTR10C LTR ERV1 0 591 1 2922 163 34 10 chr11 148836581 148837089 -1946464 + MLT2B1 LTR ERVL 1 520 0 195 42 0 0 chr11 148837225 148837249 -1946304 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 344 312 51 0 chr11 148837494 148837632 -1945921 + L2 LINE L2 1242 1386 -1928 2056 116 0 4 chr11 148837651 148837928 -1945625 + AluSx SINE Alu 1 276 -36 266 0 0 29 chr11 148837932 148837967 -1945586 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1803 197 18 79 chr11 148837971 148838264 -1945289 - MLT1D LTR MaLR -29 476 167 1874 110 61 4 chr11 148838264 148838556 -1944997 - AluSg SINE Alu 0 307 1 1803 197 18 79 chr11 148838556 148838567 -1944986 - MLT1D LTR MaLR -338 167 157 1641 177 42 30 chr11 148838567 148838928 -1944625 - L1MB8 LINE L1 0 6178 5814 1803 197 18 79 chr11 148838928 148839008 -1944545 - MLT1D LTR MaLR -348 157 126 2267 97 7 0 chr11 148839008 148839298 -1944255 - AluSg SINE Alu -18 292 1 1803 197 18 79 chr11 148839298 148839417 -1944136 - MLT1D LTR MaLR -379 126 1 2135 251 117 97 chr11 148839426 148839927 -1943626 + L2 LINE L2 1390 1879 -1435 795 157 8 15 chr11 148839927 148840061 -1943492 - FLAM_C SINE Alu 0 133 1 2711 160 17 19 chr11 148840063 148840475 -1943078 - L1MB4 LINE L1 -3 6177 5765 2280 108 10 0 chr11 148840475 148840780 -1942773 - AluSc SINE Alu -1 308 1 2711 160 17 19 chr11 148840780 148840887 -1942666 - L1MB4 LINE L1 -415 5765 5659 2135 251 117 97 chr11 148840887 148841482 -1942071 + L2 LINE L2 1879 2523 -791 585 198 0 58 chr11 148841482 148841603 -1941950 + FLAM_A SINE Alu 1 114 -19 2135 251 117 97 chr11 148841603 148841815 -1941738 + L2 LINE L2 2523 2729 -585 1560 198 38 14 chr11 148842232 148842520 -1941033 - AluJb SINE Alu -17 295 1 885 224 129 21 chr11 148842864 148843105 -1940448 - LTR48 LTR ERV1 -510 277 11 585 255 37 64 chr11 148843304 148843492 -1940061 - LTR48-int LTR ERV1 -213 4723 4541 * 3085 136 33 10 chr11 148843477 148843905 -1939648 - LTR49-int LTR ERV1 -524 5807 5363 2116 99 53 0 chr11 148843905 148844189 -1939364 + AluSp SINE Alu 1 299 -14 3085 136 33 10 chr11 148844189 148844281 -1939272 - LTR49-int LTR ERV1 -968 5363 5275 2762 138 18 13 chr11 148844624 148845080 -1938473 - LTR49-int LTR ERV1 -1052 5279 4822 601 250 0 0 chr11 148845087 148845211 -1938342 + FLAM_A SINE Alu 16 139 -3 1467 199 43 42 chr11 148845211 148845784 -1937769 - LTR49-int LTR ERV1 -1526 4805 4108 464 171 48 9 chr11 148845787 148845892 -1937661 - LTR49-int LTR ERV1 -2459 2664 2556 2049 126 0 14 chr11 148845933 148846238 -1937315 - AluSx SINE Alu 0 301 1 5487 134 20 58 chr11 148846271 148847164 -1936389 - L1MA3 LINE L1 0 6305 5455 2036 135 3 19 chr11 148847164 148847475 -1936078 - AluJb SINE Alu -4 308 3 5487 134 20 58 chr11 148847475 148847611 -1935942 - L1MA3 LINE L1 -850 5455 5315 1421 165 14 78 chr11 148847612 148847958 -1935595 - LTR49-int LTR ERV1 -2656 3675 3352 301 217 17 0 chr11 148848010 148848070 -1935483 - LTR49-int LTR ERV1 -2992 3339 3279 * 2049 169 110 145 chr11 148848068 148848132 -1935421 - LTR49-int LTR ERV1 -3217 3114 3049 2342 115 0 0 chr11 148848132 148848444 -1935109 + AluSq SINE Alu 1 312 -1 2049 169 110 145 chr11 148848444 148849195 -1934358 - LTR49-int LTR ERV1 -3282 3049 2327 1848 98 34 15 chr11 148849217 148849483 -1934070 - AluSq SINE Alu -12 301 31 6440 125 184 60 chr11 148849495 148850877 -1932676 - pTR5 LTR ERV1 -143 2295 743 4443 179 25 72 chr11 148850909 148851732 -1931821 - LTR49-int LTR ERV1 -3998 2333 1565 1871 139 10 36 chr11 148851732 148852041 -1931512 - AluJo SINE Alu -2 310 10 4443 179 25 72 chr11 148852041 148852227 -1931326 - LTR49-int LTR ERV1 -4766 1565 1372 516 119 16 198 chr11 148852238 148852364 -1931189 - LTR49-int LTR ERV1 -2939 1941 1288 272 159 23 0 chr11 148852364 148852408 -1931145 - tRNA-Glu-GAG tRNA tRNA -24 51 7 954 169 34 23 chr11 148852477 148852654 -1930899 - AluJb SINE Alu 0 312 134 1180 141 43 26 chr11 148852711 148852945 -1930608 - LTR49-int LTR ERV1 -5172 1159 922 1011 273 106 21 chr11 148853954 148854341 -1929212 + L2 LINE L2 2655 3126 -187 2291 109 0 6 chr11 148854341 148854653 -1928900 - AluSx SINE Alu -1 311 2 1011 273 106 21 chr11 148854653 148854857 -1928696 + L2 LINE L2 3126 3311 -2 625 261 62 74 chr11 148855111 148855294 -1928259 - MIR SINE MIR -1 261 80 2407 68 0 19 chr11 148855294 148855602 -1927951 + AluY SINE Alu 1 302 -9 625 261 62 74 chr11 148855602 148855675 -1927878 - MIR SINE MIR -182 80 8 336 292 14 62 chr11 148856108 148856144 -1927409 + L1MEd LINE L1 333 369 -5836 2234 103 27 0 chr11 148856144 148856436 -1927117 + AluSq SINE Alu 1 300 -13 336 292 14 62 chr11 148856436 148856543 -1927010 + L1MEd LINE L1 369 469 -5736 608 272 78 82 chr11 148856684 148857272 -1926281 + L1MEd LINE L1 682 1267 -4938 2377 103 0 0 chr11 148857305 148857615 -1925938 + AluSq SINE Alu 1 310 -3 324 278 46 37 chr11 148857808 148858024 -1925529 + L1MEd LINE L1 1541 1758 -4638 319 340 19 29 chr11 148858077 148858283 -1925270 - L2 LINE L2 -2409 905 702 650 309 79 83 chr11 148858308 148858660 -1924893 + LTR33 LTR ERVL 28 379 -142 2051 210 58 60 chr11 148858660 148859020 -1924533 + LTR40a LTR ERVL 1 361 -158 2299 107 0 3 chr11 148859020 148859318 -1924235 + AluSx SINE Alu 5 301 -11 2051 210 58 60 chr11 148859318 148859477 -1924076 + LTR40a LTR ERVL 361 519 0 650 309 79 83 chr11 148859477 148859620 -1923933 + LTR33 LTR ERVL 379 521 0 700 75 9 19 chr11 148859649 148859755 -1923798 + MLT2C2 LTR ERVL 1 105 -359 961 195 0 0 chr11 148859757 148859916 -1923637 - FRAM SINE Alu -6 170 12 1524 143 17 75 chr11 148859943 148860069 -1923484 + MLT2C1 LTR ERVL 122 254 -143 1538 171 32 14 chr11 148860069 148860349 -1923204 + AluJo SINE Alu 22 306 -6 1524 143 17 75 chr11 148860349 148860515 -1923038 + MLT2C1 LTR ERVL 254 397 0 246 105 0 0 chr11 148861164 148861202 -1922351 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 185 91 0 30 chr11 148861425 148861458 -1922095 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 189 324 87 59 chr11 148861827 148861940 -1921613 + L2 LINE L2 2230 2338 -976 2056 132 0 0 chr11 148861940 148862274 -1921279 + AluSx SINE Alu 1 334 0 189 324 87 59 chr11 148862274 148862410 -1921143 + L2 LINE L2 2338 2489 -825 1383 168 6 114 chr11 148862435 148862574 -1920979 - AluJo SINE Alu -4 298 214 1746 93 0 0 chr11 148862574 148862800 -1920753 + AluSc SINE Alu 82 307 -2 1383 168 6 114 chr11 148862800 148862994 -1920559 - AluJo SINE Alu -88 214 1 2347 63 0 0 chr11 148863200 148863484 -1920069 - AluY SINE Alu -27 284 1 253 311 63 80 chr11 148863554 148863840 -1919713 + L2 LINE L2 2824 3104 -168 747 202 0 0 chr11 148864066 148864190 -1919363 + FLAM_A SINE Alu 1 124 -9 9189 200 36 49 chr11 148864276 148864994 -1918559 - L1MB4 LINE L1 -14 6166 5440 2391 72 0 0 chr11 148864994 148865287 -1918266 - AluY SINE Alu -18 293 1 9189 200 36 49 chr11 148865287 148865603 -1917950 - L1MB4 LINE L1 -740 5440 5122 2225 131 3 3 chr11 148865603 148865915 -1917638 - AluSx SINE Alu 0 312 1 9189 200 36 49 chr11 148865915 148866059 -1917494 - L1MB4 LINE L1 -1058 5122 4978 1849 149 3 59 chr11 148866059 148866380 -1917173 - AluSx SINE Alu -9 303 1 9189 200 36 49 chr11 148866380 148868085 -1915468 - L1MB4 LINE L1 -1202 4978 3253 2145 130 13 0 chr11 148868085 148868392 -1915161 - AluSq SINE Alu -2 311 1 9189 200 36 49 chr11 148868392 148868433 -1915120 - L1MB4 LINE L1 -2927 3253 3213 1923 131 6 73 chr11 148868433 148868761 -1914792 - AluSx SINE Alu -6 306 1 9189 200 36 49 chr11 148868761 148869033 -1914520 - L1MB4 LINE L1 -2967 3213 3011 2426 88 0 0 chr11 148869033 148869339 -1914214 - AluSc SINE Alu -3 306 1 9189 200 36 49 chr11 148869339 148869619 -1913934 - L1MB4 LINE L1 -3169 3011 2729 621 122 37 0 chr11 148869619 148869701 -1913852 + AluJ/FLAM SINE Alu 10 94 -218 1179 292 111 53 chr11 148869869 148870888 -1912665 - L1MEd LINE L1 -4944 1175 98 224 253 0 67 chr11 148871075 148871150 -1912403 + A-rich Low_complexity Low_complexity 1 70 0 276 157 0 57 chr11 148871164 148871234 -1912319 + A-rich Low_complexity Low_complexity 1 66 0 38 120 0 0 chr11 148871433 148871483 -1912070 + AT_rich Low_complexity Low_complexity 1 50 0 385 95 43 52 chr11 148871499 148871738 -1911815 + T-rich Low_complexity Low_complexity 1 236 0 377 179 5 58 chr11 148871782 148871972 -1911581 + (TTG)n Simple_repeat Simple_repeat 1 180 0 234 170 67 42 chr11 148871975 148872140 -1911413 + (TATAA)n Simple_repeat Simple_repeat 2 170 0 27 0 0 0 chr11 148872423 148872450 -1911103 + AT_rich Low_complexity Low_complexity 1 27 0 222 253 0 0 chr11 148872514 148872613 -1910940 + A-rich Low_complexity Low_complexity 1 99 0 346 314 95 44 chr11 148872888 148873277 -1910276 + L1 LINE L1 2897 3305 -2841 198 103 0 0 chr11 148873341 148873370 -1910183 + (GAAAA)n Simple_repeat Simple_repeat 5 33 0 318 261 15 31 chr11 148873385 148873586 -1909967 + A-rich Low_complexity Low_complexity 1 197 0 28 29 0 0 chr11 148873909 148873944 -1909609 + AT_rich Low_complexity Low_complexity 1 35 0 424 222 0 0 chr11 148873964 148874090 -1909463 + A-rich Low_complexity Low_complexity 1 126 0 212 171 0 0 chr11 148874104 148874145 -1909408 + A-rich Low_complexity Low_complexity 1 41 0 222 284 0 37 chr11 148874215 148874296 -1909257 + C-rich Low_complexity Low_complexity 3 80 0 245 124 35 44 chr11 148874301 148874414 -1909139 + A-rich Low_complexity Low_complexity 2 113 0 242 193 0 60 chr11 148875300 148875383 -1908170 + A-rich Low_complexity Low_complexity 1 78 0 216 0 0 0 chr11 148875437 148875461 -1908092 + (A)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr11 148875461 148875485 -1908068 + AT_rich Low_complexity Low_complexity 1 24 0 379 216 9 26 chr11 148875515 148875631 -1907922 + GA-rich Low_complexity Low_complexity 4 117 0 292 402 0 0 chr11 148875644 148875731 -1907822 + A-rich Low_complexity Low_complexity 1 87 0 893 138 0 0 chr11 148876033 148876156 -1907397 + (C)n Simple_repeat Simple_repeat 1 123 0 255 259 17 0 chr11 148876156 148876214 -1907339 + CT-rich Low_complexity Low_complexity 5 63 0 188 197 0 70 chr11 148876402 148876473 -1907080 + A-rich Low_complexity Low_complexity 1 66 0 205 292 21 0 chr11 148876514 148876562 -1906991 + polypurine Low_complexity Low_complexity 2 50 0 261 139 0 0 chr11 148876563 148876606 -1906947 + (A)n Simple_repeat Simple_repeat 1 43 0 486 80 0 116 chr11 148876663 148876775 -1906778 + (T)n Simple_repeat Simple_repeat 1 99 0 87 11 0 0 chr11 148876775 148876869 -1906684 + AT_rich Low_complexity Low_complexity 1 94 0 188 115 20 81 chr11 148876869 148877017 -1906536 + (TAAA)n Simple_repeat Simple_repeat 3 141 0 316 209 11 53 chr11 148877035 148877222 -1906331 + A-rich Low_complexity Low_complexity 2 180 0 225 250 0 0 chr11 148877283 148877331 -1906222 + T-rich Low_complexity Low_complexity 3 50 0 222 62 0 0 chr11 148877603 148877635 -1905918 + (A)n Simple_repeat Simple_repeat 1 32 0 388 156 0 0 chr11 148877689 148877753 -1905800 + A-rich Low_complexity Low_complexity 1 64 0 23 77 0 0 chr11 148877754 148877793 -1905760 + AT_rich Low_complexity Low_complexity 1 39 0 344 375 0 0 chr11 148877845 148877949 -1905604 + A-rich Low_complexity Low_complexity 1 104 0 267 270 11 22 chr11 148878060 148878149 -1905404 + G-rich Low_complexity Low_complexity 2 89 0 21 80 0 0 chr11 148878149 148878174 -1905379 + GC_rich Low_complexity Low_complexity 1 25 0 268 103 58 35 chr11 148878174 148878261 -1905292 + (CGCGG)n Simple_repeat Simple_repeat 1 89 0 610 311 104 74 chr11 148878261 148878979 -1904574 - L1M2 LINE L1 -5519 1330 591 210 273 0 0 chr11 148880635 148880690 -1902863 + T-rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr11 148880755 148880783 -1902770 + AT_rich Low_complexity Low_complexity 1 28 0 1192 147 0 0 chr11 148880960 148881150 -1902403 + AluSg/x SINE Alu 119 308 -2 1761 173 0 10 chr11 148881198 148881504 -1902049 + AluJb SINE Alu 1 303 -9 23 54 0 0 chr11 148882543 148882580 -1900973 + AT_rich Low_complexity Low_complexity 1 37 0 31 82 0 0 chr11 148882688 148882737 -1900816 + AT_rich Low_complexity Low_complexity 1 49 0 284 172 0 35 chr11 148882960 148883018 -1900535 + AluY SINE Alu 87 142 -159 272 269 77 0 chr11 148883228 148883306 -1900247 - L2 LINE L2 0 3272 3189 1308 85 0 0 chr11 148883597 148883773 -1899780 + AluY SINE Alu 127 302 -9 233 228 0 0 chr11 148883774 148883831 -1899722 + L1M4 LINE L1 3722 3778 -2368 1247 166 10 0 chr11 148883950 148884149 -1899404 + AluSp SINE Alu 106 306 -7 1212 190 0 14 chr11 148884149 148884360 -1899193 + AluJo SINE Alu 82 289 -23 2611 59 0 0 chr11 148884397 148884701 -1898852 - AluY SINE Alu -7 304 1 1131 153 106 34 chr11 148884756 148885114 -1898439 + MSTB1 LTR MaLR 1 431 -1 2742 217 57 50 chr11 148885121 148886039 -1897514 - L1M4 LINE L1 -3434 3210 2300 2623 187 40 0 chr11 148886039 148886488 -1897065 - MLT1C LTR MaLR 0 467 1 2742 217 57 50 chr11 148886488 148887330 -1896223 - L1M4 LINE L1 -4344 2300 1465 2265 114 3 0 chr11 148887330 148887629 -1895924 - AluSx SINE Alu -12 300 1 2742 217 57 50 chr11 148887629 148887701 -1895852 - L1M4 LINE L1 -5179 1465 1395 1512 177 77 69 chr11 148887701 148887930 -1895623 - MLT1A1 LTR MaLR 0 365 130 2361 96 7 0 chr11 148887930 148888233 -1895320 - AluSp SINE Alu -8 305 1 1512 177 77 69 chr11 148888233 148888365 -1895188 - MLT1A1 LTR MaLR -235 130 1 2742 217 57 50 chr11 148888365 148888835 -1894718 - L1M4 LINE L1 -5249 1395 930 2324 110 0 0 chr11 148888835 148889143 -1894410 - AluY SINE Alu -3 308 1 2742 217 57 50 chr11 148889143 148889708 -1893845 - L1M4 LINE L1 -5714 930 159 2473 78 0 0 chr11 148889708 148890017 -1893536 - AluY SINE Alu -2 309 1 2742 217 57 50 chr11 148890017 148890175 -1893378 - L1M4 LINE L1 -6485 159 4 209 259 52 0 chr11 148891548 148891606 -1891947 + MIR SINE MIR 102 162 -100 945 124 0 16 chr11 148891624 148891753 -1891800 - FLAM_C SINE Alu -6 127 1 588 244 33 9 chr11 148891775 148891988 -1891565 - L1M4 LINE L1 -1052 5094 4877 1080 193 5 9 chr11 148892151 148892364 -1891189 + AluJo SINE Alu 88 299 -13 197 116 0 23 chr11 148892455 148892498 -1891055 + (GAAA)n Simple_repeat Simple_repeat 4 45 0 1874 159 79 70 chr11 148892538 148892735 -1890818 - MER63B DNA MER1_type -630 432 238 2284 107 7 0 chr11 148892735 148893043 -1890510 - AluSx SINE Alu -2 310 1 1874 159 79 70 chr11 148893043 148893273 -1890280 - MER63B DNA MER1_type -824 238 1 763 249 56 13 chr11 148893371 148893603 -1889950 + L1MC4a LINE L1 5350 5586 -590 1518 148 68 4 chr11 148893630 148893921 -1889632 + AluSq SINE Alu 4 311 0 312 234 124 44 chr11 148893935 148894161 -1889392 + L1MC4a LINE L1 5830 6073 -1735 310 224 0 0 chr11 148894288 148894346 -1889207 - L2 LINE L2 -6 3307 3250 505 313 143 20 chr11 148895009 148895309 -1888244 + L2 LINE L2 2974 3310 -3 910 261 133 65 chr11 148896654 148897174 -1886379 - MLT1K LTR MaLR -24 564 10 431 338 96 0 chr11 148897282 148897480 -1886073 - MIR SINE MIR -23 239 23 364 311 27 33 chr11 148897494 148897665 -1885888 - MER5A DNA MER1_type -2 187 7 251 205 26 26 chr11 148897889 148897967 -1885586 + Charlie7 DNA MER1_type 84 161 -2451 2055 97 0 37 chr11 148897969 148898269 -1885284 - AluSc SINE Alu -7 302 14 1632 99 5 0 chr11 148898477 148898690 -1884863 - AluSg/x SINE Alu -2 308 95 2522 84 0 0 chr11 148898919 148899229 -1884324 + AluSx SINE Alu 1 310 -2 2058 85 0 44 chr11 148899437 148899730 -1883823 + AluY SINE Alu 14 293 -18 1580 165 12 0 chr11 148900003 148900252 -1883301 - AluJb SINE Alu -15 297 46 483 285 62 36 chr11 148900521 148900738 -1882815 + L1M4 LINE L1 4655 4884 -1262 2169 127 0 0 chr11 148900738 148901037 -1882516 + AluSg1 SINE Alu 1 299 -10 483 285 62 36 chr11 148901037 148901128 -1882425 + L1M4 LINE L1 4884 4971 -1175 2367 97 0 6 chr11 148901157 148901468 -1882085 + AluSx SINE Alu 1 309 -3 967 215 100 117 chr11 148901557 148902068 -1881485 + L1MC5 LINE L1 6703 7204 -757 1901 162 13 0 chr11 148902068 148902376 -1881177 + AluJb SINE Alu 1 312 0 682 267 43 63 chr11 148902590 148903032 -1880521 + L1MC5 LINE L1 7292 7724 -237 356 310 8 31 chr11 148903042 148903171 -1880382 + MER34 LTR ERV1 1 126 -416 921 138 0 28 chr11 148903183 148903328 -1880225 + FLAM_C SINE Alu 1 141 -2 1253 214 113 14 chr11 148903330 148903686 -1879867 + LTR48B LTR ERV1 170 560 -84 192 40 0 0 chr11 148903748 148903773 -1879780 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1935 112 11 0 chr11 148903775 148904053 -1879500 - AluSx SINE Alu -31 281 1 2325 196 17 21 chr11 148904135 148904600 -1878953 - LTR32 LTR ERVL 0 471 9 4670 147 7 10 chr11 148904653 148905237 -1878316 + MER72 LTR ERV1 1 584 -138 2022 128 0 3 chr11 148905237 148905534 -1878019 - AluSx SINE Alu -15 297 2 4670 147 7 10 chr11 148905534 148905669 -1877884 + MER72 LTR ERV1 584 718 -4 1870 110 4 15 chr11 148906958 148907231 -1876322 + AluSx SINE Alu 7 276 -36 206 61 0 30 chr11 148907236 148907269 -1876284 + (CAA)n Simple_repeat Simple_repeat 1 32 0 235 246 16 0 chr11 148907660 148907721 -1875832 + (TTCA)n Simple_repeat Simple_repeat 1 62 0 1795 112 4 15 chr11 148907754 148908022 -1875531 - MER4E LTR ERV1 -5 774 510 1225 147 0 0 chr11 148908022 148908213 -1875340 + AluJb SINE Alu 118 308 -4 1873 164 0 0 chr11 148909398 148909708 -1873845 + AluJb SINE Alu 1 310 -2 1956 147 3 6 chr11 148909852 148910165 -1873388 - AluJb SINE Alu 0 312 1 215 382 38 23 chr11 148910513 148910644 -1872909 + L2 LINE L2 3140 3272 0 1656 177 0 10 chr11 148911035 148911329 -1872224 - AluJb SINE Alu -20 292 2 2035 130 3 0 chr11 148911556 148911851 -1871702 + AluSx SINE Alu 1 297 -10 261 0 0 0 chr11 148911851 148911880 -1871673 + (CA)n Simple_repeat Simple_repeat 2 30 0 299 305 0 0 chr11 148911889 148911984 -1871569 - MARNA DNA Mariner -370 216 122 216 368 73 0 chr11 148911994 148912130 -1871423 - MIR SINE MIR -12 250 105 498 280 0 21 chr11 148912247 148912390 -1871163 + MER91B DNA MER1_type 26 165 -25 2284 92 7 0 chr11 148912471 148912777 -1870776 - AluSq SINE Alu -5 308 1 2093 125 0 6 chr11 148912823 148913135 -1870418 - AluSg SINE Alu 0 310 1 1143 157 0 49 chr11 148913135 148913358 -1870195 - AluJo SINE Alu -16 296 85 337 216 0 14 chr11 148913754 148913828 -1869725 - L2 LINE L2 -204 3068 2996 275 281 83 16 chr11 148913953 148914074 -1869479 - L2 LINE L2 -508 2806 2678 272 387 0 0 chr11 148914838 148914949 -1868604 + (TG)n Simple_repeat Simple_repeat 1 111 0 1710 138 0 15 chr11 148915862 148916130 -1867423 - AluJb SINE Alu -15 297 34 468 250 175 4 chr11 148918008 148918109 -1865444 - L1MC4a LINE L1 -308 5813 5782 2096 104 0 29 chr11 148918109 148918418 -1865135 - AluSq SINE Alu -13 300 1 468 250 175 4 chr11 148918418 148918560 -1864993 - L1MC4a LINE L1 -339 5782 5666 438 315 41 32 chr11 148918877 148919104 -1864449 - MIR SINE MIR -3 259 19 251 400 21 0 chr11 148919985 148920125 -1863428 - L2 LINE L2 -485 2829 2687 1729 184 18 64 chr11 148920167 148920558 -1862995 + MLT1A2 LTR MaLR 2 374 0 327 370 54 42 chr11 148920564 148920678 -1862875 - L2 LINE L2 -33 3239 3128 1863 116 11 0 chr11 148920678 148920953 -1862600 + AluSq SINE Alu 26 303 -10 327 370 54 42 chr11 148920953 148921246 -1862307 - L2 LINE L2 -144 3128 2827 2369 93 0 0 chr11 148921356 148921666 -1861887 - AluSx SINE Alu -2 310 1 883 188 41 0 chr11 148921875 148922045 -1861508 + FRAM SINE Alu 1 175 -1 1957 259 40 22 chr11 148922134 148922686 -1860867 + MER68 LTR ERV1 1 562 0 187 293 85 18 chr11 148922695 148922859 -1860694 - L2 LINE L2 -1068 2246 2072 225 188 78 16 chr11 148922865 148922929 -1860624 - L2 LINE L2 -1387 1927 1860 2029 103 10 7 chr11 148923206 148923497 -1860056 + AluSq SINE Alu 1 292 -21 253 329 92 48 chr11 148923516 148923723 -1859830 - L2 LINE L2 -193 3079 2864 308 182 0 52 chr11 148923989 148924066 -1859487 + Tigger5 DNA MER2_type 2251 2323 0 333 183 110 12 chr11 148924116 148924198 -1859355 + Tigger5 DNA MER2_type 2234 2323 0 1496 176 60 11 chr11 148924676 148924960 -1858593 - AluJb SINE Alu -13 299 2 813 144 51 103 chr11 148929317 148929454 -1854099 + MER5A DNA MER1_type 5 131 -58 1945 155 0 16 chr11 148929454 148929771 -1853782 - AluJo SINE Alu 0 312 1 813 144 51 103 chr11 148929771 148929828 -1853725 + MER5A DNA MER1_type 131 189 0 2120 124 7 0 chr11 148932157 148932464 -1851089 + AluSx SINE Alu 1 309 -3 234 81 0 0 chr11 148932534 148932571 -1850982 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 517 279 50 15 chr11 148932800 148933020 -1850533 + MIR SINE MIR 33 260 -2 461 255 115 30 chr11 148933298 148933498 -1850055 - MIR SINE MIR -26 236 20 272 348 58 7 chr11 148934419 148934557 -1848996 + L2 LINE L2 2229 2373 -941 226 350 71 0 chr11 148934882 148935022 -1848531 - MER5B DNA MER1_type -4 174 25 427 324 21 14 chr11 148936810 148936955 -1846598 + L2 LINE L2 3168 3313 0 1006 214 43 0 chr11 148936990 148937200 -1846353 + MER20 DNA MER1_type 1 219 0 2016 130 7 0 chr11 148937292 148937585 -1845968 - AluSx SINE Alu -17 295 1 485 285 85 47 chr11 148937681 148937916 -1845637 - L1ME4a LINE L1 -4 6117 5874 1903 136 14 0 chr11 148937934 148938220 -1845333 - AluSx SINE Alu 0 312 23 1738 153 37 3 chr11 148939185 148939485 -1844068 - AluJo SINE Alu -2 310 1 2141 103 0 3 chr11 148940383 148940674 -1842879 - AluSg SINE Alu -20 290 1 1008 118 12 24 chr11 148940675 148940844 -1842709 - AluJb SINE Alu -10 302 136 1901 138 3 0 chr11 148942320 148942627 -1840926 - AluSx SINE Alu 0 308 1 1010 157 13 0 chr11 148942637 148942796 -1840757 - FAM SINE Alu -14 161 1 1372 183 3 64 chr11 148942972 148943283 -1840270 + AluJb SINE Alu 21 312 0 483 318 73 0 chr11 148943477 148943656 -1839897 + MIR SINE MIR 1 192 -70 319 243 90 56 chr11 148943766 148943910 -1839643 - L3b LINE CR1 -158 1425 1277 299 283 132 20 chr11 148944478 148944630 -1838923 - MIR SINE MIR -77 185 17 444 256 58 15 chr11 148944639 148944776 -1838777 - MER3 DNA MER1_type -26 183 41 487 256 131 25 chr11 148945027 148945187 -1838366 - MIR SINE MIR -67 195 19 679 157 122 0 chr11 148947228 148947343 -1836210 + FLAM_C SINE Alu 1 129 -4 283 370 99 0 chr11 148947964 148948126 -1835427 - MIR SINE MIR 0 262 85 236 254 0 123 chr11 148949278 148949400 -1834153 + MIR SINE MIR 23 129 -79 264 258 0 16 chr11 148949540 148949602 -1833951 - MIR3 SINE MIR -44 164 104 2346 81 0 3 chr11 148950661 148950971 -1832582 - AluY SINE Alu -2 309 1 198 0 0 0 chr11 148952523 148952545 -1831008 + (T)n Simple_repeat Simple_repeat 1 22 0 37 43 0 14 chr11 148953251 148953288 -1830265 + GC_rich Low_complexity Low_complexity 1 38 -30 252 59 0 0 chr11 148953288 148953322 -1830231 + (CAG)n Simple_repeat Simple_repeat 1 34 0 37 43 0 14 chr11 148953322 148953353 -1830200 + GC_rich Low_complexity Low_complexity 38 68 0 30 45 0 0 chr11 148953488 148953532 -1830021 + GC_rich Low_complexity Low_complexity 1 44 0 2089 142 0 0 chr11 148955391 148955680 -1827873 - AluSx SINE Alu -18 294 6 2176 110 10 13 chr11 148955897 148956206 -1827347 - AluSq SINE Alu -5 308 1 392 103 0 15 chr11 148956328 148956396 -1827157 + (CCA)n Simple_repeat Simple_repeat 2 68 0 1222 179 129 10 chr11 148956847 148957149 -1826404 + MER58B DNA MER1_type 4 341 0 351 281 16 31 chr11 148957521 148957649 -1825904 - MIR3 SINE MIR -6 202 77 204 213 0 107 chr11 148957751 148957790 -1825763 - MIR SINE MIR -18 244 215 2288 91 28 0 chr11 148957790 148958075 -1825478 - AluSc SINE Alu -16 293 1 204 213 0 107 chr11 148958075 148958110 -1825443 - MIR SINE MIR -47 215 178 661 286 68 5 chr11 148958112 148958318 -1825235 - MIR SINE MIR 0 262 44 2098 109 56 0 chr11 148958899 148959183 -1824370 - AluSg SINE Alu -10 300 1 245 148 66 0 chr11 148959744 148959805 -1823748 + (CTCG)n Simple_repeat Simple_repeat 4 68 0 183 224 61 0 chr11 148960557 148960606 -1822947 + MIR SINE MIR 187 238 -24 202 286 107 54 chr11 148961030 148961142 -1822411 + L3 LINE CR1 1446 1563 -14 23 0 0 0 chr11 148961146 148961169 -1822384 + AT_rich Low_complexity Low_complexity 1 23 0 593 173 0 63 chr11 148961180 148961307 -1822246 - FLAM_A SINE Alu -14 119 1 378 339 63 11 chr11 148961541 148961715 -1821838 - MIR3 SINE MIR -7 201 19 285 118 0 0 chr11 148962906 148962957 -1820596 + (CA)n Simple_repeat Simple_repeat 2 52 0 317 365 68 24 chr11 148962972 148963312 -1820241 - L2 LINE L2 -397 2917 2563 655 141 33 14 chr11 148963527 148963739 -1819814 + CT-rich Low_complexity Low_complexity 1 216 0 2163 127 10 0 chr11 148963745 148964052 -1819501 - AluSx SINE Alu -2 310 1 2481 133 54 2 chr11 148966252 148966658 -1816895 - MSTA LTR MaLR 0 428 2 184 317 28 62 chr11 148967017 148967162 -1816391 + MIR3 SINE MIR 6 145 -63 2598 78 0 0 chr11 148968562 148968870 -1814683 + AluSg SINE Alu 2 309 -1 384 266 32 0 chr11 148969418 148969512 -1814041 + MIR3 SINE MIR 76 172 -36 612 273 89 60 chr11 148969736 148970051 -1813502 - L2 LINE L2 -1 3312 2989 555 266 118 26 chr11 148970435 148970664 -1812889 - MIR SINE MIR -10 252 3 225 342 0 0 chr11 148970945 148971021 -1812532 + MIR SINE MIR 180 255 -7 407 209 146 0 chr11 148972184 148972294 -1811259 + MER63 DNA MER1_type 694 819 -241 305 125 156 0 chr11 148972358 148972422 -1811131 + MER63 DNA MER1_type 843 916 -144 1087 176 32 0 chr11 148972438 148972562 -1810991 + AluJo SINE Alu 1 134 -178 423 0 0 0 chr11 148972562 148972609 -1810944 + (CA)n Simple_repeat Simple_repeat 2 48 0 1087 176 32 0 chr11 148972609 148972672 -1810881 + AluJo SINE Alu 134 194 -118 2048 94 4 0 chr11 148972672 148972928 -1810625 + AluSp SINE Alu 40 296 -17 317 214 0 0 chr11 148972929 148972985 -1810568 + L1MC4 LINE L1 6648 6703 -1339 224 225 0 0 chr11 148972985 148973025 -1810528 + (TATG)n Simple_repeat Simple_repeat 2 41 0 440 189 0 0 chr11 148973025 148973115 -1810438 + MER63 DNA MER1_type 926 1015 -47 2473 84 0 0 chr11 148977778 148978076 -1805477 + AluSc SINE Alu 1 298 -11 304 300 106 38 chr11 148978277 148978514 -1805039 - L1 LINE L1 -2813 3333 3081 1570 167 89 4 chr11 148978520 148978801 -1804752 - AluJo SINE Alu -4 308 4 458 249 71 0 chr11 148978805 148978974 -1804579 - L1M4 LINE L1 -2623 3523 3343 1047 133 14 115 chr11 148978977 148979195 -1804358 - AluJo SINE Alu -116 196 1 345 294 49 49 chr11 148980073 148980257 -1803296 + MIR SINE MIR 7 190 -72 600 256 81 6 chr11 148981145 148981317 -1802236 + MIR SINE MIR 77 261 -1 235 325 38 0 chr11 148981797 148981877 -1801676 + MIR SINE MIR 66 148 -60 2335 91 7 0 chr11 148982028 148982324 -1801229 + AluSx SINE Alu 1 298 -14 816 159 23 0 chr11 148983305 148983437 -1800116 - AluJo SINE Alu -177 135 1 400 319 17 9 chr11 148983706 148983822 -1799731 - MIR SINE MIR -72 136 20 961 107 8 0 chr11 148984102 148984233 -1799320 - AluJ SINE Alu -4 308 177 888 147 0 0 chr11 148984237 148984366 -1799187 + AluJo SINE Alu 84 212 -100 1193 139 0 12 chr11 148984370 148984543 -1799010 - AluJ SINE Alu -141 171 1 276 327 27 0 chr11 148985037 148985147 -1798406 + MIR SINE MIR 123 235 -27 343 247 22 0 chr11 148985174 148985263 -1798290 + MIR SINE MIR 114 204 -58 2347 109 0 0 chr11 148985349 148985653 -1797900 - AluSq SINE Alu -9 304 1 211 266 85 43 chr11 148986901 148986995 -1796558 - L2 LINE L2 -38 3234 3137 248 235 71 51 chr11 148988803 148988901 -1794652 - L2 LINE L2 -31 3241 3142 343 233 78 10 chr11 148989343 148989446 -1794107 + L2 LINE L2 254 363 -2951 3229 268 177 35 chr11 148989475 148989762 -1793791 + L2 LINE L2 784 1029 -2243 2065 164 0 0 chr11 148989762 148990074 -1793479 + AluJb SINE Alu 1 312 0 3229 268 177 35 chr11 148990074 148990937 -1792616 + L2 LINE L2 1029 1768 -1504 2492 93 0 3 chr11 148990937 148991250 -1792303 - AluSq SINE Alu -1 312 1 3229 268 177 35 chr11 148991250 148992197 -1791356 + L2 LINE L2 1768 3261 -11 2386 92 3 10 chr11 148993426 148993561 -1789992 + AluSq SINE Alu 1 135 -178 2650 43 0 0 chr11 148993561 148993865 -1789688 + AluY SINE Alu 1 304 -7 2386 92 3 10 chr11 148993865 148994043 -1789510 + AluSq SINE Alu 135 312 -1 314 183 12 49 chr11 148994891 148994973 -1788580 + Charlie4a DNA MER1_type 40 118 -390 1131 239 56 27 chr11 148994973 148995197 -1788356 + Charlie4a DNA MER1_type 60 276 -1685 804 74 0 0 chr11 148995197 148995305 -1788248 + (TA)n Simple_repeat Simple_repeat 2 109 0 2082 128 0 10 chr11 148995305 148995595 -1787958 - AluSq SINE Alu -25 288 2 1131 239 56 27 chr11 148995595 148995742 -1787811 + Charlie4a DNA MER1_type 275 443 -65 336 83 0 0 chr11 148996619 148996667 -1786886 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 515 316 33 28 chr11 148996729 148996944 -1786609 + MIR SINE MIR 9 224 -38 489 306 53 6 chr11 148997530 148997700 -1785853 - MIR3 SINE MIR -11 197 20 273 29 0 0 chr11 148997760 148997794 -1785759 + (TCC)n Simple_repeat Simple_repeat 2 35 0 413 349 105 0 chr11 148997814 148998023 -1785530 - MIR SINE MIR -25 237 7 375 280 38 8 chr11 149001862 149001994 -1781559 - L2 LINE L2 0 3272 3137 263 274 21 32 chr11 149002578 149002673 -1780880 + MIR3 SINE MIR 109 202 -6 193 264 0 38 chr11 149004393 149004446 -1779107 + L2 LINE L2 3250 3300 -13 277 328 31 31 chr11 149004764 149004959 -1778594 + L2 LINE L2 2485 2679 -635 385 359 34 5 chr11 149005132 149005338 -1778215 - MIR SINE MIR -1 261 50 277 305 121 50 chr11 149005520 149005985 -1777568 - L2 LINE L2 -222 3050 2526 229 278 103 16 chr11 149007077 149007203 -1776350 + MIR3 SINE MIR 24 160 -48 257 286 0 38 chr11 149007794 149007899 -1775654 - MIR SINE MIR -56 206 106 203 217 17 0 chr11 149009395 149009455 -1774098 + GA-rich Low_complexity Low_complexity 3 63 0 373 249 40 51 chr11 149009476 149009565 -1773988 + L1MC4a LINE L1 5747 5835 -1973 2501 128 21 3 chr11 149009565 149009948 -1773605 - MLT1B LTR MaLR 0 390 1 373 249 40 51 chr11 149009948 149010035 -1773518 + L1MC4a LINE L1 5835 5921 -1887 378 274 152 39 chr11 149010247 149010477 -1773076 + MIR SINE MIR 7 262 0 201 288 17 0 chr11 149011916 149011975 -1771578 + MIR SINE MIR 115 174 -88 235 360 92 12 chr11 149014385 149014549 -1769004 - L2 LINE L2 0 3272 3096 235 213 0 0 chr11 149014688 149014735 -1768818 - MIR SINE MIR -108 154 108 7192 131 42 8 chr11 149014860 149016050 -1767503 + Tigger3b DNA MER2_type 1 1231 0 8903 218 51 20 chr11 149016228 149018776 -1764777 - L1MCa LINE L1 -743 5683 3213 2073 108 0 0 chr11 149018776 149019036 -1764517 + AluSx SINE Alu 1 260 -52 282 56 0 0 chr11 149019036 149019072 -1764481 + (CAA)n Simple_repeat Simple_repeat 1 36 0 8903 218 51 20 chr11 149019072 149019827 -1763726 - L1MCa LINE L1 -3213 3213 2482 2137 113 0 39 chr11 149019827 149020138 -1763415 - AluSc SINE Alu -10 299 1 8903 218 51 20 chr11 149020138 149021493 -1762060 - L1MCa LINE L1 -3944 2482 943 6853 131 57 15 chr11 149021493 149021712 -1761841 - HSMAR2 DNA Mariner -1 1301 1093 1955 105 0 4 chr11 149021712 149021979 -1761574 - AluY SINE Alu -13 298 33 6853 131 57 15 chr11 149021979 149022389 -1761164 - HSMAR2 DNA Mariner -209 1093 702 2052 104 14 0 chr11 149022389 149022689 -1760864 - AluSq SINE Alu 0 304 1 6853 131 57 15 chr11 149022689 149023176 -1760377 - HSMAR2 DNA Mariner -600 702 136 1791 147 3 49 chr11 149023332 149023638 -1759915 - AluJb SINE Alu -18 294 3 2414 171 32 19 chr11 149023659 149024122 -1759431 - L1MCa LINE L1 -5472 954 486 400 143 0 112 chr11 149024117 149024215 -1759338 + L1PBb LINE L1 504 590 -5614 * 1427 218 17 10 chr11 149024264 149024558 -1758995 - AluJo SINE Alu -11 301 6 714 194 8 0 chr11 149024574 149024703 -1758850 - FLAM_C SINE Alu -3 130 1 2167 178 39 29 chr11 149024703 149025113 -1758440 - L1MCa LINE L1 -5992 434 21 9735 203 60 36 chr11 149025114 149026618 -1756935 - L1MD1 LINE L1 -350 6286 4821 1900 178 0 3 chr11 149026618 149026922 -1756631 + AluJo SINE Alu 1 303 -9 9735 203 60 36 chr11 149026922 149027828 -1755725 - L1MD1 LINE L1 -1815 4821 3939 2295 104 0 0 chr11 149027828 149028125 -1755428 + AluSg SINE Alu 1 297 -13 9735 203 60 36 chr11 149028125 149029034 -1754519 - L1MD1 LINE L1 -2697 3939 3054 1893 167 0 10 chr11 149029034 149029333 -1754220 - AluJo SINE Alu -16 296 1 9735 203 60 36 chr11 149029333 149031195 -1752358 - L1MD1 LINE L1 -3582 3054 995 1974 139 139 16 chr11 149031207 149031588 -1751965 + MSTA LTR MaLR 1 428 0 10415 125 6 26 chr11 149031590 149033193 -1750360 + MSTA-int LTR MaLR 3 1574 -6 1733 165 122 38 chr11 149033198 149033592 -1749961 + MSTA LTR MaLR 1 427 -1 2899 233 157 7 chr11 149033592 149033693 -1749860 - L1MD1 LINE L1 -5548 992 907 2150 127 26 34 chr11 149033693 149034071 -1749482 + THE1C LTR MaLR 1 375 0 2899 233 157 7 chr11 149034071 149034816 -1748737 - L1MD1 LINE L1 -5633 907 19 29 0 0 0 chr11 149034894 149034923 -1748630 + AT_rich Low_complexity Low_complexity 1 29 0 331 332 91 5 chr11 149034991 149035211 -1748342 - MIR SINE MIR -16 246 8 197 221 95 5 chr11 149036141 149036249 -1747304 + MIR SINE MIR 82 246 -16 297 122 0 0 chr11 149036258 149036299 -1747254 - MLT2B2 LTR ERVL 0 464 424 373 237 0 26 chr11 149036311 149036463 -1747090 + (TA)n Simple_repeat Simple_repeat 1 148 0 274 86 0 86 chr11 149036468 149036538 -1747015 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 341 43 21 0 chr11 149036675 149036722 -1746831 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 1567 199 23 32 chr11 149036768 149037110 -1746443 - MLT2B2 LTR ERVL -176 339 1 778 149 0 109 chr11 149038824 149038916 -1744637 - MER5A DNA MER1_type -34 155 89 2309 97 0 0 chr11 149038916 149039206 -1744347 - AluSc SINE Alu -19 290 1 778 149 0 109 chr11 149039206 149039287 -1744266 - MER5A DNA MER1_type -100 89 1 242 293 56 23 chr11 149040502 149040633 -1742920 - MIR SINE MIR -71 137 5 261 0 0 0 chr11 149040908 149040937 -1742616 + (TG)n Simple_repeat Simple_repeat 2 30 0 269 330 85 21 chr11 149041900 149042088 -1741465 + MIR SINE MIR 46 245 -17 289 224 35 0 chr11 149042483 149042568 -1740985 + MIR SINE MIR 84 171 -91 2040 104 0 0 chr11 149042582 149042852 -1740701 - AluSx SINE Alu -42 270 1 3421 144 63 69 chr11 149043175 149043899 -1739654 + LTR8A LTR ERV1 1 720 -7 233 75 25 0 chr11 149044749 149044789 -1738764 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 361 338 76 0 chr11 149045861 149046006 -1737547 - L2 LINE L2 0 3272 3117 338 169 0 14 chr11 149046083 149046154 -1737399 + (TA)n Simple_repeat Simple_repeat 1 70 0 319 115 51 64 chr11 149046166 149046244 -1737309 - LTR66 LTR ERVL -171 439 363 * 2200 118 142 6 chr11 149046208 149046574 -1736979 - MSTA LTR MaLR -12 416 1 287 200 33 0 chr11 149046729 149046789 -1736764 - MIR SINE MIR -181 81 20 740 156 37 37 chr11 149046801 149046936 -1736617 - AluJo SINE Alu -176 136 2 340 203 0 16 chr11 149047018 149047082 -1736471 - MER2 DNA MER2_type -1 344 282 * 502 261 51 0 chr11 149047057 149047195 -1736358 - MER8 DNA MER2_type -60 179 35 185 182 0 0 chr11 149048955 149048988 -1734565 - L3 LINE CR1 -4 1573 1541 343 326 88 70 chr11 149049083 149049368 -1734185 - L2 LINE L2 0 3272 2983 1071 65 0 29 chr11 149049538 149049677 -1733876 + AluSg/x SINE Alu 156 290 -20 216 0 0 0 chr11 149049900 149049924 -1733629 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4004 142 33 9 chr11 149051159 149051851 -1731702 - L1MA10 LINE L1 0 6334 5626 1854 134 13 36 chr11 149055040 149055346 -1728207 + AluJb SINE Alu 1 299 -13 320 177 53 18 chr11 149055595 149055708 -1727845 + (GTGTG)n Simple_repeat Simple_repeat 5 121 0 1518 178 86 55 chr11 149056308 149056690 -1726863 - MSTD LTR MaLR -2 394 1 213 39 0 0 chr11 149056808 149056834 -1726719 + (GA)n Simple_repeat Simple_repeat 2 27 0 716 158 17 0 chr11 149058032 149058152 -1725401 + MSTB LTR MaLR 1 122 -304 471 198 22 0 chr11 149058152 149058243 -1725310 + MSTB LTR MaLR 30 122 -304 2011 172 68 3 chr11 149058243 149058610 -1724943 + MSTB LTR MaLR 30 420 -6 2008 209 15 2 chr11 149061184 149061581 -1721972 + MER57A LTR ERV1 2 403 0 557 262 243 30 chr11 149061661 149062374 -1721179 - L2 LINE L2 -17 3296 2440 6614 86 1 40 chr11 149062745 149063747 -1719806 - L1PA10 LINE L1 -5 6163 5212 2341 93 0 0 chr11 149063747 149064047 -1719506 - AluSx SINE Alu -12 300 1 6614 86 1 40 chr11 149064047 149064496 -1719057 - L1PA10 LINE L1 -956 5212 4747 1285 126 39 4 chr11 149064597 149064827 -1718726 - L1PA10 LINE L1 -2764 3382 3145 5983 157 31 21 chr11 149064836 149066138 -1717415 - L1MC1 LINE L1 -2 6331 5015 1930 137 3 0 chr11 149067161 149067453 -1716100 + AluSx SINE Alu 1 293 -19 1013 268 69 26 chr11 149067453 149067800 -1715753 + MER93b LTR ERV1 12 373 0 194 202 45 169 chr11 149068129 149068218 -1715335 - MER5A DNA MER1_type -75 114 37 27 49 0 0 chr11 149068293 149068334 -1715219 + AT_rich Low_complexity Low_complexity 1 41 0 2310 77 3 0 chr11 149068363 149068660 -1714893 - AluSc SINE Alu -11 298 1 1520 153 3 51 chr11 149069215 149069443 -1714110 - L1MA4A LINE L1 -14 6289 6077 1574 145 37 54 chr11 149069443 149069740 -1713813 - AluJo SINE Alu -18 294 3 1520 153 3 51 chr11 149069740 149069805 -1713748 - L1MA4A LINE L1 -226 6077 6010 460 211 14 49 chr11 149071975 149072117 -1711436 + MER58C DNA MER1_type 79 215 0 312 267 73 33 chr11 149073130 149073280 -1710273 - MIR SINE MIR -105 157 2 299 263 157 7 chr11 149073284 149073426 -1710127 - MIR SINE MIR -3 205 29 342 173 0 0 chr11 149075147 149075222 -1708331 + CT-rich Low_complexity Low_complexity 3 77 0 218 243 136 39 chr11 149075854 149075957 -1707596 - MIR SINE MIR -69 139 27 1014 155 22 47 chr11 149076110 149076342 -1707211 + L1MA9 LINE L1 6060 6285 -27 1743 221 23 3 chr11 149076364 149076708 -1706845 + MLT1A1 LTR MaLR 11 361 -4 493 271 37 42 chr11 149076984 149077198 -1706355 - MIR SINE MIR -7 255 43 516 255 21 41 chr11 149078218 149078363 -1705190 - MIR SINE MIR -5 257 116 274 261 76 0 chr11 149078975 149079094 -1704459 - L2 LINE L2 -721 2593 2466 298 247 0 52 chr11 149079153 149079230 -1704323 + L2 LINE L2 3241 3313 0 190 398 11 0 chr11 149079239 149079332 -1704221 - MIR SINE MIR -75 133 40 399 284 34 23 chr11 149079753 149079895 -1703658 + MIR SINE MIR 40 185 -71 324 307 64 21 chr11 149080201 149080341 -1703212 - MIR SINE MIR -40 222 77 188 253 192 10 chr11 149080437 149080536 -1703017 + L2 LINE L2 3154 3270 -2 2587 143 5 47 chr11 149080966 149081030 -1702523 - Tigger2a DNA MER2_type -2279 429 364 1725 142 7 27 chr11 149081030 149081326 -1702227 - AluJo SINE Alu -22 290 1 2587 143 5 47 chr11 149081326 149081709 -1701844 - Tigger2a DNA MER2_type -2344 364 1 1649 152 102 63 chr11 149082471 149082852 -1700701 + MSTD LTR MaLR 1 396 0 389 320 49 70 chr11 149083656 149083849 -1699704 - LTR16C LTR ERVL -1 490 294 4405 44 13 2 chr11 149083849 149084398 -1699155 + L1PA5 LINE L1 5600 6154 0 389 320 49 70 chr11 149084398 149084420 -1699133 - LTR16C LTR ERVL -197 294 273 243 0 0 0 chr11 149084420 149084447 -1699106 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 389 320 49 70 chr11 149084447 149084514 -1699039 - LTR16C LTR ERVL -218 273 213 496 207 261 43 chr11 149085141 149085329 -1698224 + L2 LINE L2 3084 3312 -1 469 307 101 17 chr11 149087109 149087288 -1696265 + MIR SINE MIR 13 206 -56 342 209 88 68 chr11 149087347 149087495 -1696058 + L1ME4a LINE L1 5966 6116 -5 24 0 0 0 chr11 149087496 149087520 -1696033 + AT_rich Low_complexity Low_complexity 1 24 0 281 246 0 15 chr11 149087599 149087664 -1695889 + MIR SINE MIR 89 152 -110 279 133 0 0 chr11 149087742 149087787 -1695766 + (TA)n Simple_repeat Simple_repeat 2 46 0 358 340 78 13 chr11 149087894 149088047 -1695506 + L2 LINE L2 3109 3271 -1 14160 132 7 19 chr11 149088469 149088884 -1694669 - L1P5 LINE L1 -572 5584 5166 2307 99 0 0 chr11 149088884 149089186 -1694367 - AluSx SINE Alu -10 302 1 14160 132 7 19 chr11 149089186 149091239 -1692314 - L1P5 LINE L1 -990 5166 3145 1348 173 26 34 chr11 149091248 149091514 -1692039 - L1MC1 LINE L1 -2 6331 6068 320 217 65 33 chr11 149092504 149092596 -1690957 + L1P4 LINE L1 5490 5584 -581 454 305 55 25 chr11 149092611 149092847 -1690706 + L1MC4a LINE L1 5633 5875 -1933 365 299 77 115 chr11 149093025 149093416 -1690137 + L2 LINE L2 2896 3271 -1 180 296 0 0 chr11 149093429 149093483 -1690070 - MIR SINE MIR -177 85 32 2284 198 61 12 chr11 149093779 149094273 -1689280 + MER63 DNA MER1_type 503 1020 -40 327 250 125 24 chr11 149094290 149094458 -1689095 - MLT1K LTR MaLR -10 578 394 292 301 122 8 chr11 149094569 149094692 -1688861 - MLT1K LTR MaLR -373 215 79 333 217 43 0 chr11 149095363 149095432 -1688121 + MER5A DNA MER1_type 62 133 -56 401 271 96 50 chr11 149096212 149096430 -1687123 + MIR SINE MIR 20 247 -15 791 264 143 9 chr11 149096649 149096964 -1686589 - L1MEc LINE L1 -6002 394 38 182 336 57 49 chr11 149098152 149098274 -1685279 + L2 LINE L2 2995 3117 -155 765 201 78 6 chr11 149098280 149098459 -1685094 - MER20 DNA MER1_type -27 192 1 285 281 16 0 chr11 149099017 149099081 -1684472 - L2 LINE L2 0 3313 3249 943 155 7 7 chr11 149099310 149099465 -1684088 - MSTB LTR MaLR -271 155 1 2011 119 3 13 chr11 149099925 149100235 -1683318 + AluSx SINE Alu 5 311 -1 205 209 23 0 chr11 149100405 149100448 -1683105 + L3b LINE CR1 1536 1579 -4 504 284 111 72 chr11 149101760 149102229 -1681324 - L1ME3 LINE L1 -3 6167 5681 1353 183 10 7 chr11 149102823 149103113 -1680440 - AluJo SINE Alu -21 291 1 253 329 6 19 chr11 149103684 149103845 -1679708 + CT-rich Low_complexity Low_complexity 1 159 0 13256 83 12 8 chr11 149104262 149106116 -1677437 - HERVH LTR ERV1 -5170 2543 599 643 298 88 15 chr11 149106550 149106889 -1676664 - L1ME4a LINE L1 -237 5884 5521 204 158 0 0 chr11 149107071 149107109 -1676444 + CT-rich Low_complexity Low_complexity 2 39 0 230 234 0 0 chr11 149107391 149107438 -1676115 + L1MC4 LINE L1 6467 6513 -1529 688 199 89 138 chr11 149107445 149107485 -1676068 - MLT2B1 LTR ERVL -1 519 479 760 63 18 0 chr11 149107485 149107596 -1675957 + (TAGA)n Simple_repeat Simple_repeat 3 115 0 688 199 89 138 chr11 149107596 149107837 -1675716 - MLT2B1 LTR ERVL -41 479 146 182 273 0 0 chr11 149108792 149108836 -1674717 - L3 LINE CR1 -2 1575 1532 500 216 28 84 chr11 149109301 149109514 -1674039 + AluJb SINE Alu 5 205 -107 1411 124 18 5 chr11 149109982 149110199 -1673354 + HERVH LTR ERV1 5600 5819 -1894 * 2536 71 50 13 chr11 149110197 149110575 -1672978 + HERVH LTR ERV1 7322 7713 0 2077 132 64 43 chr11 149110575 149111014 -1672539 + LTR7 LTR ERV1 1 448 -2 1099 41 0 34 chr11 149111022 149111169 -1672384 + LTR7 LTR ERV1 307 448 -2 186 271 107 49 chr11 149111442 149111564 -1671989 + L2 LINE L2 3138 3266 -6 492 337 36 6 chr11 149114111 149114277 -1669276 + MIR3 SINE MIR 19 189 -19 1966 107 10 7 chr11 149114277 149114568 -1668985 - AluSc SINE Alu -17 292 1 444 188 163 62 chr11 149114949 149115109 -1668444 + MIR3 SINE MIR 23 198 -10 343 249 25 11 chr11 149115732 149115841 -1667712 + MER57A LTR ERV1 296 403 0 185 214 45 169 chr11 149116170 149116259 -1667294 - MER5A DNA MER1_type -75 114 37 25 51 0 0 chr11 149116336 149116375 -1667178 + AT_rich Low_complexity Low_complexity 1 39 0 2256 84 3 0 chr11 149116404 149116701 -1666852 - AluSc SINE Alu -11 298 1 496 115 0 0 chr11 149117256 149117334 -1666219 - L1MA4A LINE L1 -14 6289 6212 207 0 0 0 chr11 149117438 149117461 -1666092 + (TCTA)n Simple_repeat Simple_repeat 2 24 0 371 316 121 10 chr11 149118176 149118382 -1665171 + MIR SINE MIR 2 230 -32 1273 157 9 14 chr11 149118837 149119054 -1664499 - Tigger3(Golem) DNA MER2_type -1 3028 2813 1276 93 19 29 chr11 149119458 149119663 -1663890 - AluSq SINE Alu -110 203 1 394 306 171 24 chr11 149120118 149120288 -1663265 - L3 LINE CR1 -28 1549 1355 1444 178 0 98 chr11 149120389 149120595 -1662958 - AluJo SINE Alu -8 294 130 2126 116 0 3 chr11 149120595 149120897 -1662656 + AluSx SINE Alu 1 301 -11 1444 178 0 98 chr11 149120897 149121016 -1662537 - AluJo SINE Alu -172 130 1 245 338 164 39 chr11 149121074 149121281 -1662272 - L3 LINE CR1 -461 1116 884 646 298 110 4 chr11 149123030 149123258 -1660295 + MIR SINE MIR 4 255 -7 271 286 0 0 chr11 149123382 149123445 -1660108 + L2 LINE L2 3250 3312 -1 259 261 58 0 chr11 149123735 149123804 -1659749 - MER91B DNA MER1_type -117 73 1 476 211 222 56 chr11 149123982 149124162 -1659391 - MER63A DNA MER1_type 0 210 1 198 0 0 0 chr11 149124668 149124690 -1658863 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 243 250 42 14 chr11 149124740 149124812 -1658741 - MIR SINE MIR -50 212 139 187 181 75 117 chr11 149125550 149125644 -1657909 - L2 LINE L2 0 3272 3183 596 239 34 0 chr11 149125711 149125828 -1657725 - L2 LINE L2 0 3313 3193 2415 232 47 20 chr11 149125893 149126557 -1656996 + L1ME LINE L1 4164 4845 -1301 229 119 24 0 chr11 149128223 149128265 -1655288 + MADE1 DNA Mariner 1 43 -37 640 278 103 31 chr11 149128287 149128607 -1654946 - L1ME3 LINE L1 -263 5899 5557 231 88 0 0 chr11 149128726 149128760 -1654793 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 2048 223 82 30 chr11 149128778 149129538 -1654015 + L1MC4 LINE L1 6644 7480 -305 290 342 40 40 chr11 149129561 149129691 -1653862 + L1MC4 LINE L1 7687 7819 -223 2692 16 3 0 chr11 149129691 149130000 -1653553 + AluY SINE Alu 1 310 -1 290 342 40 40 chr11 149130000 149130068 -1653485 + L1MC4 LINE L1 7818 7885 -157 799 208 20 35 chr11 149131447 149131649 -1651904 + L1ME LINE L1 5405 5603 -563 2090 91 7 10 chr11 149131649 149131945 -1651608 + AluSq SINE Alu 1 295 -18 2035 51 8 0 chr11 149131945 149132198 -1651355 + L1PA4 LINE L1 5900 6154 -1 1350 69 0 32 chr11 149132348 149132537 -1651016 + L1PA6 LINE L1 5972 6154 0 2153 89 10 0 chr11 149133780 149134071 -1649482 - AluSx SINE Alu -8 304 11 626 388 82 22 chr11 149134975 149135511 -1648042 + L2 LINE L2 2185 2752 -562 628 125 11 0 chr11 149135512 149135600 -1647953 + AluSg/x SINE Alu 203 291 -19 241 310 101 31 chr11 149135602 149135731 -1647822 + L2 LINE L2 2743 2880 -434 835 226 137 27 chr11 149135752 149136043 -1647510 + L1PA16 LINE L1 5838 6151 -3 2108 120 3 0 chr11 149136046 149136355 -1647198 + AluSx SINE Alu 1 310 -2 288 109 0 0 chr11 149136357 149136403 -1647150 + L1MB4 LINE L1 6133 6178 -2 1857 105 14 11 chr11 149137019 149137305 -1646248 - AluSx SINE Alu -16 296 10 180 344 166 26 chr11 149137360 149137511 -1646042 + L2 LINE L2 2882 3053 -219 254 225 38 25 chr11 149138381 149138461 -1645092 + MLT1L LTR MaLR 1 81 -534 1145 236 57 0 chr11 149138544 149138824 -1644729 - L1M4 LINE L1 -902 5244 4949 572 165 0 37 chr11 149138825 149138934 -1644619 - AluJb SINE Alu 0 312 208 550 271 35 14 chr11 149139957 149140101 -1643452 - MIR3 SINE MIR -23 185 39 432 338 14 7 chr11 149140134 149140276 -1643277 + MIR SINE MIR 7 149 -113 232 293 26 60 chr11 149140288 149140404 -1643149 - L2 LINE L2 -22 3291 3180 2264 104 0 0 chr11 149141406 149141714 -1641839 - AluSq SINE Alu -5 308 1 208 231 0 0 chr11 149142340 149142379 -1641174 - L2 LINE L2 -12 3260 3222 236 176 73 15 chr11 149142380 149142448 -1641105 - MIR SINE MIR -74 188 117 572 264 110 6 chr11 149144017 149144199 -1639354 + MIR SINE MIR 34 234 -28 423 255 49 0 chr11 149144459 149144561 -1638992 + MIR SINE MIR 86 192 -70 204 214 0 0 chr11 149144990 149145032 -1638521 + CT-rich Low_complexity Low_complexity 1 42 0 287 305 25 42 chr11 149145157 149145275 -1638278 - L2 LINE L2 -1 3312 3197 183 365 71 8 chr11 149145407 149145533 -1638020 + L2 LINE L2 3137 3270 -2 551 270 34 0 chr11 149145958 149146106 -1637447 + MIR3 SINE MIR 30 182 -26 252 236 67 22 chr11 149146385 149146474 -1637079 + MIR SINE MIR 110 202 -60 468 148 0 0 chr11 149146586 149146694 -1636859 + (G)n Simple_repeat Simple_repeat 1 108 0 606 159 0 0 chr11 149146728 149146873 -1636680 + G-rich Low_complexity Low_complexity 1 145 0 1020 111 0 0 chr11 149146874 149147054 -1636499 + (G)n Simple_repeat Simple_repeat 1 180 0 290 301 72 78 chr11 149147155 149147308 -1636245 - MIR SINE MIR -56 152 21 687 251 181 49 chr11 149147394 149147864 -1635689 + MLT1H LTR MaLR 8 539 -10 207 0 0 0 chr11 149147920 149147943 -1635610 + (CA)n Simple_repeat Simple_repeat 1 23 0 2070 79 23 13 chr11 149148495 149148798 -1634755 - AluY SINE Alu -5 306 1 795 234 41 23 chr11 149149139 149149357 -1634196 - MER58A DNA MER1_type 0 224 3 383 263 0 0 chr11 149149495 149149575 -1633978 - MIR3 SINE MIR -48 160 81 248 328 113 0 chr11 149149727 149149853 -1633700 - MIR SINE MIR -63 145 5 376 336 15 8 chr11 149151171 149151302 -1632251 - L2 LINE L2 0 3272 3141 762 232 18 0 chr11 149151730 149151894 -1631659 + L1MEc LINE L1 577 743 -5653 3920 238 67 39 chr11 149151899 149152713 -1630840 + L1MEc LINE L1 1313 2103 -4112 2340 94 0 0 chr11 149152713 149153020 -1630533 + AluY SINE Alu 1 307 -4 3920 238 67 39 chr11 149153020 149154081 -1629472 + L1MEc LINE L1 2103 3133 -3082 2188 105 0 10 chr11 149154081 149154394 -1629159 + AluY SINE Alu 1 310 -1 3920 238 67 39 chr11 149154394 149154540 -1629013 + L1MEc LINE L1 3133 3273 -2942 426 20 0 0 chr11 149154540 149154591 -1628962 + (GA)n Simple_repeat Simple_repeat 2 52 0 3920 238 67 39 chr11 149154591 149154829 -1628724 + L1MEc LINE L1 3273 3592 -2623 1598 153 3 21 chr11 149154830 149155117 -1628436 + AluJo SINE Alu 1 282 -30 222 37 0 0 chr11 149155124 149155151 -1628402 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1444 231 86 20 chr11 149155200 149155698 -1627855 + L1MEc LINE L1 4386 4916 -1299 21 0 0 0 chr11 149155719 149155740 -1627813 + AT_rich Low_complexity Low_complexity 1 21 0 1873 128 3 3 chr11 149155748 149156030 -1627523 - AluSx SINE Alu -30 282 1 3021 175 40 49 chr11 149156042 149156699 -1626854 - L1MC2 LINE L1 -10 6334 5684 1472 216 51 90 chr11 149156704 149157195 -1626358 - L1MCa LINE L1 -5667 759 288 722 287 185 13 chr11 149157679 149158073 -1625480 + LTR16B LTR ERVL 3 464 0 2231 319 74 34 chr11 149158145 149159315 -1624238 + HERV16 LTR ERVL 91 1318 -3678 749 162 87 12 chr11 149159315 149159488 -1624065 + MER53 DNA DNA 3 188 -1 2231 319 74 34 chr11 149159488 149159591 -1623962 + HERV16 LTR ERVL 1318 1415 -3581 6004 154 17 21 chr11 149159608 149160364 -1623189 + L1MA4A LINE L1 4168 4925 -1378 2011 152 7 0 chr11 149160364 149160674 -1622879 - AluSx SINE Alu 0 312 1 6004 154 17 21 chr11 149160674 149161873 -1621680 + L1MA4A LINE L1 4925 6121 -182 560 167 0 0 chr11 149161874 149161970 -1621583 + L1MA4A LINE L1 6184 6279 -24 2042 327 67 43 chr11 149162033 149162329 -1621224 + HERV16 LTR ERVL 1688 1975 -3789 1909 162 124 21 chr11 149162329 149162717 -1620836 + MSTA LTR MaLR 1 428 0 2042 327 67 43 chr11 149162717 149163318 -1620235 + HERV16 LTR ERVL 1975 2560 -3204 1024 163 6 12 chr11 149163318 149163490 -1620063 + FAM SINE Alu 1 171 -4 2042 327 67 43 chr11 149163490 149164382 -1619171 + HERV16 LTR ERVL 2560 3556 -2208 312 54 0 0 chr11 149164399 149164436 -1619117 + MLT1D LTR MaLR 454 490 -15 1006 198 166 48 chr11 149164458 149164772 -1618781 + MLT1G LTR MaLR 240 590 0 375 301 35 23 chr11 149164798 149164971 -1618582 + L1ME4a LINE L1 5715 5889 -232 197 333 95 19 chr11 149165980 149166085 -1617468 - L2 LINE L2 -34 3238 3126 353 261 9 54 chr11 149167200 149167215 -1616338 - L2 LINE L2 -4 3309 3295 14826 156 18 8 chr11 149167215 149169678 -1613875 + Tigger7 DNA MER2_type 2 2487 0 353 261 9 54 chr11 149169678 149169773 -1613780 - L2 LINE L2 -18 3295 3204 2016 235 78 6 chr11 149170143 149170691 -1612862 + MLT1E LTR MaLR 4 591 -2 334 211 14 0 chr11 149171371 149171442 -1612111 - L1ME LINE L1 -467 5654 5583 2420 74 0 16 chr11 149171912 149172308 -1611245 - AluY SINE Alu 0 311 1 224 262 95 36 chr11 149172738 149172822 -1610731 - L2 LINE L2 -2 3311 3223 328 298 16 8 chr11 149173462 149173586 -1609967 - MIR3 SINE MIR -3 205 81 333 302 127 58 chr11 149173620 149173928 -1609625 - L2 LINE L2 -1 3271 2943 4692 181 25 6 chr11 149175503 149176784 -1606769 + L1MB7 LINE L1 4843 6149 -35 263 311 0 0 chr11 149176904 149176965 -1606588 + L2 LINE L2 3212 3272 0 228 216 0 0 chr11 149177198 149177249 -1606304 + L2 LINE L2 3263 3313 0 1689 178 7 14 chr11 149178138 149178430 -1605123 - AluJo SINE Alu -22 290 1 1752 173 7 26 chr11 149178565 149178872 -1604681 - AluJo SINE Alu -11 301 1 733 224 65 15 chr11 149178905 149179106 -1604447 - MIR SINE MIR -50 212 2 1203 156 0 0 chr11 149179208 149179388 -1604165 + AluJb SINE Alu 1 180 -132 261 0 0 0 chr11 149229388 149229417 -1554136 + (A)n Simple_repeat Simple_repeat 1 29 0 266 183 33 0 chr11 149229738 149229798 -1553755 - Charlie2a DNA MER1_type -1320 1542 1481 635 287 77 31 chr11 149229983 149230244 -1553309 - Charlie2a DNA MER1_type -2477 305 33 404 242 79 36 chr11 149230599 149230764 -1552789 - MIR3 SINE MIR -3 205 34 1408 173 43 133 chr11 149231310 149231709 -1551844 - MLT1A1 LTR MaLR 0 365 3 254 245 69 20 chr11 149232146 149232248 -1551305 + MIR SINE MIR 129 235 -27 25 0 0 0 chr11 149233128 149233153 -1550400 + AT_rich Low_complexity Low_complexity 1 25 0 41 58 0 0 chr11 149233870 149233939 -1549614 + AT_rich Low_complexity Low_complexity 1 69 0 1178 206 7 57 chr11 149234587 149234869 -1548684 - MLT1A1 LTR MaLR -2 363 96 2164 207 44 67 chr11 149234869 149235479 -1548074 - LTR9 LTR ERV1 0 612 17 521 170 11 0 chr11 149235489 149235583 -1547970 - MLT1A1 LTR MaLR -266 99 5 384 40 0 0 chr11 149236034 149236084 -1547469 + (TG)n Simple_repeat Simple_repeat 1 50 0 1085 230 129 35 chr11 149236154 149236589 -1546964 - LTR33A LTR ERVL -44 479 4 2865 166 22 20 chr11 149237468 149237969 -1545584 + MLT2B3 LTR ERVL 1 502 -52 714 69 9 17 chr11 149237969 149238085 -1545468 + (TCTA)n Simple_repeat Simple_repeat 3 117 0 180 0 0 0 chr11 149239691 149239711 -1543842 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 791 188 8 118 chr11 149240498 149240743 -1542810 - MER20 DNA MER1_type 0 219 2 1951 266 63 56 chr11 149241378 149242438 -1541115 + L1MEc LINE L1 1450 2512 -3703 330 116 0 0 chr11 149242438 149242481 -1541072 - tRNA-Ile-ATT tRNA tRNA -34 43 1 1951 266 63 56 chr11 149242481 149242792 -1540761 + L1MEc LINE L1 2512 2819 -3396 1128 136 0 71 chr11 149242794 149242992 -1540561 + AluSq SINE Alu 1 184 -129 189 0 0 0 chr11 149243140 149243161 -1540392 + (T)n Simple_repeat Simple_repeat 1 21 0 506 186 50 56 chr11 149243195 149243356 -1540197 - MIR SINE MIR -23 239 80 32 0 0 0 chr11 149243673 149243705 -1539848 + AT_rich Low_complexity Low_complexity 1 32 0 224 319 223 0 chr11 149243894 149244051 -1539502 + MIR3 SINE MIR 14 205 -3 370 306 49 7 chr11 149245557 149245701 -1537852 + MIR SINE MIR 40 189 -73 423 294 70 68 chr11 149245881 149246368 -1537185 + LTR67 LTR ERVL 2 489 -68 323 214 68 17 chr11 149246372 149246489 -1537064 - L1MC4 LINE L1 -4 8038 7916 383 247 20 66 chr11 149246567 149246763 -1536790 - L1MC5 LINE L1 -97 7945 7650 292 154 0 0 chr11 149248105 149248157 -1535396 + MER4-int LTR ERV1 1111 1162 -5436 211 189 0 0 chr11 149248157 149248194 -1535359 + (TG)n Simple_repeat Simple_repeat 1 37 0 1686 150 41 39 chr11 149248633 149249020 -1534533 - L1MB8 LINE L1 0 6178 5791 604 188 68 0 chr11 149249808 149249941 -1533612 - L1MA9 LINE L1 -562 5772 5631 2607 140 49 43 chr11 149249944 149250378 -1533175 + L1MA9 LINE L1 5802 6241 -71 231 36 0 0 chr11 149250378 149250406 -1533147 + (TG)n Simple_repeat Simple_repeat 2 29 0 2607 140 49 43 chr11 149250406 149250477 -1533076 + L1MA9 LINE L1 6241 6310 -2 190 299 30 15 chr11 149251574 149251641 -1531912 - L2 LINE L2 -36 3236 3169 264 284 12 29 chr11 149251709 149251817 -1531736 + MER5A DNA MER1_type 49 166 -23 360 239 275 7 chr11 149253220 149253358 -1530195 + MER5A DNA MER1_type 9 183 -6 223 236 36 0 chr11 149253648 149253703 -1529850 - L2 LINE L2 -2 3311 3255 381 257 0 0 chr11 149255300 149255479 -1528074 + (CA)n Simple_repeat Simple_repeat 1 179 0 258 268 0 0 chr11 149255518 149255641 -1527912 + (CA)n Simple_repeat Simple_repeat 2 124 0 212 154 0 0 chr11 149256862 149256901 -1526652 + MIR SINE MIR 209 247 -15 243 0 0 0 chr11 149256909 149256936 -1526617 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 537 284 129 4 chr11 149257562 149257794 -1525759 + MIR SINE MIR 1 261 -1 1820 189 23 40 chr11 149258352 149258749 -1524804 + MLT1B LTR MaLR 1 390 0 1935 137 68 6 chr11 149259960 149260373 -1523180 - MER61D LTR ERV1 0 501 1 362 284 28 28 chr11 149260558 149260699 -1522854 + MIR SINE MIR 30 170 -92 250 222 93 86 chr11 149263430 149263592 -1519961 + MER103 DNA DNA 3 165 -1 239 311 34 34 chr11 149265332 149265451 -1518102 - MIR SINE MIR -94 168 50 200 277 77 0 chr11 149267603 149267668 -1515885 + MIR3 SINE MIR 111 180 -28 195 274 30 30 chr11 149268406 149268524 -1515029 + MIR SINE MIR 9 126 -135 3424 58 7 7 chr11 149268546 149268993 -1514560 + LTR7 LTR ERV1 2 448 -2 16262 100 32 19 chr11 149268995 149271848 -1511705 + HERVH LTR ERV1 1 2995 -4718 957 140 7 0 chr11 149271827 149271977 -1511576 + HERVH LTR ERV1 3140 3290 -4423 * 3377 109 6 8 chr11 149271967 149272470 -1511083 + HERVH LTR ERV1 3492 3993 -3720 4443 139 3 1 chr11 149272472 149273133 -1510420 + HERVH LTR ERV1 4488 5149 -2564 1423 134 19 0 chr11 149273134 149273350 -1510203 + HERVH LTR ERV1 5600 5819 -1894 * 2498 84 45 13 chr11 149273348 149273728 -1509825 + HERVH LTR ERV1 7322 7713 0 3448 67 0 7 chr11 149273728 149274179 -1509374 + LTR7 LTR ERV1 1 448 -2 219 250 30 70 chr11 149274181 149274254 -1509299 + MIR SINE MIR 166 236 -26 2486 148 29 12 chr11 149274254 149274673 -1508880 - MSTB LTR MaLR 0 426 1 219 250 30 70 chr11 149274673 149274699 -1508854 + MIR SINE MIR 235 261 -1 279 79 0 0 chr11 149274748 149274786 -1508767 + (TA)n Simple_repeat Simple_repeat 1 38 0 466 211 9 0 chr11 149274924 149275033 -1508520 - L1M4 LINE L1 -3115 3031 2922 2513 83 3 0 chr11 149275247 149275559 -1507994 - AluSp SINE Alu 0 313 1 2868 131 71 60 chr11 149275666 149276230 -1507323 - MER4B LTR ERV1 -40 570 1 579 159 79 24 chr11 149276352 149276478 -1507075 - FLAM_C SINE Alu 0 133 1 1756 234 31 46 chr11 149276883 149277280 -1506273 + MER110 LTR ERV1 1 391 -100 2330 84 0 7 chr11 149277280 149277578 -1505975 + AluSg SINE Alu 1 296 -14 1756 234 31 46 chr11 149277578 149277658 -1505895 + MER110 LTR ERV1 391 471 -20 296 338 42 81 chr11 149278209 149278567 -1504986 + L2 LINE L2 2926 3269 -3 197 339 0 15 chr11 149278883 149278948 -1504605 + L2 LINE L2 3190 3253 -19 2536 72 3 0 chr11 149279713 149280020 -1503533 + AluY SINE Alu 1 308 -3 742 174 0 8 chr11 149280028 149280160 -1503393 + L1MA5A LINE L1 4760 4890 -1256 6327 127 44 33 chr11 149280277 149281730 -1501823 + L1MA5A LINE L1 4827 6297 0 355 333 31 19 chr11 149281850 149282012 -1501541 - MIR3 SINE MIR -24 184 21 1622 178 93 9 chr11 149282088 149282431 -1501122 - MLT1A2 LTR MaLR -2 372 1 183 271 0 0 chr11 149283088 149283158 -1500395 + CT-rich Low_complexity Low_complexity 3 72 0 268 238 197 41 chr11 149283396 149283543 -1500010 + MIR SINE MIR 85 254 -8 219 281 18 0 chr11 149283550 149283607 -1499946 + L2 LINE L2 3146 3203 -69 339 218 95 48 chr11 149283619 149283635 -1499918 - L1MA9 LINE L1 -2 6310 6295 2200 228 73 9 chr11 149283635 149284193 -1499360 - L1ME1 LINE L1 -14 6221 5628 952 198 8 115 chr11 149284193 149284446 -1499107 - MLT2D LTR ERVL 0 414 189 1572 228 22 31 chr11 149284453 149284813 -1498740 - MLT1A2 LTR MaLR 0 374 18 637 219 30 18 chr11 149284931 149285095 -1498458 - ERVL LTR ERVL -97 5667 5502 467 164 0 19 chr11 149285097 149285201 -1498352 - ERVL LTR ERVL -207 5557 5456 1778 258 65 25 chr11 149285270 149286462 -1497091 - L1ME1 LINE L1 -1800 4415 3139 * 2198 245 38 45 chr11 149286445 149287163 -1496390 - L1ME1 LINE L1 -5635 761 49 436 20 0 0 chr11 149287731 149287780 -1495773 + AluSc SINE Alu 154 202 -107 1010 209 46 26 chr11 149288171 149288477 -1495076 + L1M4 LINE L1 2613 2924 -3222 757 262 24 140 chr11 149288461 149288625 -1494928 + L1M2a LINE L1 2 183 -6985 * 1957 108 37 0 chr11 149288625 149288893 -1494660 + AluSg SINE Alu 1 278 -32 219 103 0 0 chr11 149288893 149288932 -1494621 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 757 262 24 140 chr11 149288932 149289132 -1494421 + L1M2a LINE L1 182 296 -6872 2059 92 7 33 chr11 149289132 149289435 -1494118 - AluSg SINE Alu -15 295 1 757 262 24 140 chr11 149289435 149289568 -1493985 + L1M2a LINE L1 296 443 -6725 1900 221 34 18 chr11 149289628 149290322 -1493231 + L1M2a LINE L1 1629 2350 -4748 288 0 0 0 chr11 149292339 149292371 -1491182 + (CA)n Simple_repeat Simple_repeat 1 32 0 1764 190 76 6 chr11 149292371 149292838 -1490715 + L1MD2 LINE L1 5161 5656 -703 666 183 211 46 chr11 149292848 149293023 -1490530 + MER20 DNA MER1_type 11 214 -5 1148 228 26 8 chr11 149293039 149293307 -1490246 + L1MD2 LINE L1 5662 5934 -425 399 21 0 0 chr11 149296281 149296329 -1487224 + (TG)n Simple_repeat Simple_repeat 2 49 0 1818 228 135 35 chr11 149296757 149297360 -1486193 - L1M4 LINE L1 -4846 1696 1002 1988 152 0 3 chr11 149297360 149297657 -1485896 + AluJb SINE Alu 1 296 -16 1818 228 135 35 chr11 149297657 149297800 -1485753 - L1M4 LINE L1 -5540 1002 875 258 300 6 94 chr11 149297864 149298024 -1485529 - L1M4 LINE L1 -5675 867 722 231 325 24 24 chr11 149298413 149298582 -1484971 - L1M4 LINE L1 -6357 185 17 312 27 0 0 chr11 149298796 149298833 -1484720 + (TG)n Simple_repeat Simple_repeat 2 38 0 494 273 47 29 chr11 149299096 149299268 -1484285 + MER5B DNA MER1_type 4 178 0 2468 228 50 34 chr11 149299349 149299893 -1483660 + L1ME1 LINE L1 5096 5630 -554 2451 75 0 13 chr11 149299893 149300201 -1483352 + AluY SINE Alu 1 304 -7 2468 228 50 34 chr11 149300201 149300701 -1482852 + L1ME1 LINE L1 5630 6184 0 258 271 0 0 chr11 149300710 149300780 -1482773 + MIR SINE MIR 180 249 -13 986 254 117 83 chr11 149301461 149302027 -1481526 - MLT1G LTR MaLR -3 587 3 25 31 0 0 chr11 149302682 149302714 -1480839 + AT_rich Low_complexity Low_complexity 1 32 0 648 157 19 0 chr11 149303312 149303420 -1480133 - AluJo/FRAM SINE Alu -24 288 179 1169 179 31 22 chr11 149303422 149303528 -1480025 - AluJo SINE Alu -81 231 127 207 88 0 0 chr11 149303528 149303562 -1479991 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1169 179 31 22 chr11 149303562 149303684 -1479869 - AluJo SINE Alu -185 127 1 1373 260 94 35 chr11 149304073 149304561 -1478992 + MLT1G1 LTR MaLR 79 595 0 2290 219 58 12 chr11 149304561 149305167 -1478386 + L1ME2 LINE L1 5322 5955 -209 325 233 0 14 chr11 149305168 149305241 -1478312 - MIR SINE MIR -186 76 5 543 193 134 29 chr11 149305446 149305617 -1477936 - L1ME2 LINE L1 -10 6154 5966 * 1812 247 61 57 chr11 149305612 149306621 -1476932 + L1MEc LINE L1 714 1727 -4669 * 2142 239 92 16 chr11 149306620 149307414 -1476139 + L1MEc LINE L1 2234 3087 -3128 220 171 0 0 chr11 149308619 149308654 -1474899 + polypurine Low_complexity Low_complexity 3 37 0 627 256 8 0 chr11 149309878 149310011 -1473542 + MER58B DNA MER1_type 206 339 -2 823 244 51 28 chr11 149310237 149310454 -1473099 - MIR SINE MIR -22 240 19 761 198 62 6 chr11 149311156 149311333 -1472220 + L1MA9 LINE L1 6061 6247 -65 657 75 21 0 chr11 149311433 149311527 -1472026 + HERVH LTR ERV1 2309 2404 -5309 228 301 108 36 chr11 149311585 149311751 -1471802 - L3 LINE CR1 -259 1318 1141 1077 226 120 131 chr11 149311897 149312499 -1471054 + MLT1G LTR MaLR 1 590 0 588 226 84 7 chr11 149312759 149312914 -1470639 + MLT1B LTR MaLR 1 167 -223 1005 183 6 0 chr11 149312996 149313165 -1470388 + MLT1B LTR MaLR 214 383 -7 215 103 26 0 chr11 149313173 149313212 -1470341 + (TA)n Simple_repeat Simple_repeat 1 40 0 247 371 0 0 chr11 149313727 149313851 -1469702 + L1ME LINE L1 5644 5767 -354 318 319 34 0 chr11 149314952 149315071 -1468482 + L3 LINE CR1 812 934 -643 481 191 61 0 chr11 149315072 149315187 -1468366 + L1ME2 LINE L1 6016 6137 -27 645 244 107 12 chr11 149315418 149315586 -1467967 - MER63A DNA MER1_type 0 210 27 1532 105 50 0 chr11 149316450 149316669 -1466884 + MER30 DNA MER1_type 1 230 0 499 271 82 64 chr11 149316932 149317396 -1466157 + L1MDb LINE L1 988 1433 -4983 211 317 0 0 chr11 149317459 149317541 -1466012 + MIR SINE MIR 73 154 -108 734 197 92 0 chr11 149318375 149318527 -1465026 - MLT1B LTR MaLR -7 383 218 357 24 0 0 chr11 149318677 149318719 -1464834 + (A)n Simple_repeat Simple_repeat 1 42 0 467 206 10 20 chr11 149318755 149318857 -1464696 + MLT1H LTR MaLR 57 157 -392 189 107 0 0 chr11 149320894 149320922 -1462631 + (A)n Simple_repeat Simple_repeat 1 28 0 803 237 215 43 chr11 149320958 149321376 -1462177 + MLT1H LTR MaLR 57 546 -3 665 273 35 15 chr11 149321646 149321844 -1461709 + MIR SINE MIR 2 203 -59 261 311 135 33 chr11 149323321 149323565 -1459988 + L2 LINE L2 2826 3094 -178 233 245 0 0 chr11 149325950 149326003 -1457550 - L2 LINE L2 -61 3252 3200 506 299 128 35 chr11 149326301 149326645 -1456908 + L3 LINE CR1 1201 1576 -1 629 246 52 39 chr11 149328843 149329069 -1454484 + MIR SINE MIR 28 256 -6 257 254 42 0 chr11 149330586 149330657 -1452896 + L2 LINE L2 3227 3300 -13 338 287 15 37 chr11 149332491 149332627 -1450926 + MIR SINE MIR 47 179 -83 227 293 121 35 chr11 149332923 149333039 -1450514 + L2 LINE L2 3138 3263 -9 411 306 57 57 chr11 149333718 149333983 -1449570 - L2 LINE L2 -183 3089 2825 763 274 46 8 chr11 149334091 149334328 -1449225 - MIR SINE MIR 0 262 17 187 286 0 0 chr11 149334554 149334603 -1448950 - L2 LINE L2 -925 2389 2341 4703 222 49 15 chr11 149334773 149336333 -1447220 - L1M4 LINE L1 -3054 3590 2085 390 21 0 0 chr11 149336333 149336380 -1447173 + (TG)n Simple_repeat Simple_repeat 2 48 0 4703 222 49 15 chr11 149336380 149336983 -1446570 - L1M4 LINE L1 -4559 2085 1504 1700 157 46 23 chr11 149336983 149337288 -1446265 - AluJo SINE Alu 0 312 1 4703 222 49 15 chr11 149337288 149337719 -1445834 - L1M4 LINE L1 -5140 1504 804 252 308 67 17 chr11 149338001 149338121 -1445432 - L1M4 LINE L1 -6315 227 102 267 236 69 0 chr11 149338173 149338245 -1445308 - L1M3d LINE L1 -5814 317 1 246 339 138 25 chr11 149338604 149338843 -1444710 - LTR16C LTR ERVL -2 489 224 419 340 48 5 chr11 149340768 149340974 -1442579 + MIR SINE MIR 44 258 -4 1190 137 28 0 chr11 149341038 149341220 -1442333 + MER58A DNA MER1_type 37 223 -1 2646 185 25 41 chr11 149342584 149343093 -1440460 - MLT2B2 LTR ERVL -14 501 1 2060 138 3 6 chr11 149343763 149344074 -1439479 - AluSg SINE Alu 0 310 1 1048 78 16 0 chr11 149344088 149344217 -1439336 - AluY SINE Alu -180 131 1 278 269 118 25 chr11 149344391 149344510 -1439043 + MIR3 SINE MIR 40 169 -39 634 276 44 10 chr11 149344579 149344808 -1438745 + L1MC4a LINE L1 5718 5956 -165 212 184 0 0 chr11 149344815 149344853 -1438700 + (TA)n Simple_repeat Simple_repeat 2 39 0 278 242 0 0 chr11 149345155 149345221 -1438332 + MIR3 SINE MIR 93 158 -50 267 114 0 0 chr11 149345281 149345325 -1438228 + (CA)n Simple_repeat Simple_repeat 2 45 0 180 244 44 0 chr11 149346906 149346951 -1436602 - L3 LINE CR1 -3 1574 1528 3070 199 37 16 chr11 149347069 149347727 -1435826 + Tigger7 DNA MER2_type 1 2587 0 237 261 14 14 chr11 149347775 149347844 -1435709 - L3 LINE CR1 -237 1340 1272 864 191 36 6 chr11 149347849 149348017 -1435536 - MER45A DNA AcHobo -1 177 5 1101 169 0 93 chr11 149348949 149349185 -1434368 - AluJo SINE Alu -12 300 87 1299 228 40 58 chr11 149349452 149349830 -1433723 + MLT1A2 LTR MaLR 2 372 -2 271 321 50 13 chr11 149350239 149350398 -1433155 - L3 LINE CR1 -474 1103 939 2030 199 153 20 chr11 149350518 149351062 -1432491 + L1MC4a LINE L1 7192 7807 -1 253 221 126 32 chr11 149351066 149351161 -1432392 - L2 LINE L2 -13 3300 3197 204 273 50 111 chr11 149351534 149351732 -1431821 - L2 LINE L2 -553 2761 2576 263 301 15 66 chr11 149351894 149352030 -1431523 - MIR SINE MIR -113 149 21 394 277 36 18 chr11 149353783 149353895 -1429658 + MER81 DNA DNA 1 114 0 11586 58 11 1 chr11 149355020 149357255 -1426298 - L1PA6 LINE L1 -16 6138 3879 363 303 97 22 chr11 149357502 149357687 -1425866 + MIR SINE MIR 1 199 -63 426 325 0 0 chr11 149357824 149357947 -1425606 - MLT1I LTR MaLR -272 137 15 411 279 172 56 chr11 149358351 149358724 -1424829 - L2 LINE L2 0 3313 2898 659 303 40 12 chr11 149358822 149359073 -1424480 + MIR SINE MIR 2 259 -3 1190 227 98 25 chr11 149359668 149359994 -1423559 + MLT1A1 LTR MaLR 6 355 -10 224 277 101 24 chr11 149360315 149360440 -1423113 + MIR SINE MIR 58 202 -60 247 313 52 0 chr11 149362965 149363061 -1420492 + MIR3 SINE MIR 105 205 -3 621 239 124 109 chr11 149363162 149363327 -1420226 - L2 LINE L2 0 3313 3152 2247 125 61 0 chr11 149363327 149363719 -1419834 + L1MA8 LINE L1 5874 6289 -2 621 239 124 109 chr11 149363719 149363955 -1419598 - L2 LINE L2 -161 3152 2906 578 305 61 24 chr11 149366298 149366544 -1417009 - MIR SINE MIR 0 262 8 328 251 11 120 chr11 149366532 149366707 -1416846 + MIR SINE MIR 57 212 -50 * 294 283 76 11 chr11 149367211 149367303 -1416250 - MIR3 SINE MIR -25 183 86 220 309 164 0 chr11 149368496 149368606 -1414947 - L2 LINE L2 -49 3223 3096 184 172 0 0 chr11 149372500 149372529 -1411024 + MER5A DNA MER1_type 78 106 -83 1055 211 43 0 chr11 149372608 149372817 -1410736 + MER58A DNA MER1_type 5 222 -2 653 257 22 27 chr11 149372888 149373034 -1410519 + MIR SINE MIR 2 148 -114 356 62 234 0 chr11 149373034 149373098 -1410455 - MADE1 DNA Mariner 0 80 2 653 257 22 27 chr11 149373098 149373173 -1410380 + MIR SINE MIR 148 222 -40 882 264 152 26 chr11 149373265 149373458 -1410095 + MLT1L LTR MaLR 5 172 -443 1951 142 20 7 chr11 149373458 149373760 -1409793 - AluJo SINE Alu -6 306 1 882 264 152 26 chr11 149373760 149374059 -1409494 + MLT1L LTR MaLR 172 559 -56 3965 146 30 35 chr11 149374228 149374981 -1408572 + L1MB1 LINE L1 5419 6168 0 1965 62 0 0 chr11 149375050 149375293 -1408260 + L1PA5 LINE L1 5910 6152 -2 2027 163 40 14 chr11 149380307 149380657 -1402896 + MLT1A1 LTR MaLR 7 365 0 192 265 0 0 chr11 149380780 149380829 -1402724 - MIR SINE MIR -13 249 201 1346 155 6 65 chr11 149384025 149384347 -1399206 + AluSx SINE Alu 1 303 -9 723 194 124 35 chr11 149385347 149385548 -1398005 - MER20 DNA MER1_type 0 219 1 224 224 52 0 chr11 149385730 149385788 -1397765 + (TATG)n Simple_repeat Simple_repeat 1 61 0 334 253 0 36 chr11 149385798 149385881 -1397672 - MER112 DNA MER1_type -179 81 2 1508 275 131 83 chr11 149386832 149388112 -1395441 - L3 LINE CR1 -1 1576 236 350 332 40 87 chr11 149389568 149390429 -1393124 + L2 LINE L2 2419 3268 -4 2230 109 7 10 chr11 149391294 149391598 -1391955 - AluSx SINE Alu -9 303 1 191 313 39 31 chr11 149391784 149391912 -1391641 + MIR SINE MIR 97 225 -37 219 318 148 0 chr11 149394406 149394494 -1389059 - MIR SINE MIR -142 120 20 398 257 105 0 chr11 149394867 149394972 -1388581 - L2 LINE L2 -1 3271 3156 217 369 48 24 chr11 149396017 149396185 -1387368 + MIR SINE MIR 3 174 -88 255 31 0 0 chr11 149396825 149396857 -1386696 + (CA)n Simple_repeat Simple_repeat 2 33 0 370 333 21 28 chr11 149398401 149398563 -1384990 + MIR SINE MIR 27 190 -61 1202 138 31 26 chr11 149399563 149399758 -1383795 + AluJo SINE Alu 88 283 -29 277 261 134 34 chr11 149400382 149400489 -1383064 - L2 LINE L2 -1 3312 3190 1169 159 0 60 chr11 149400489 149400721 -1382832 - MER20 DNA MER1_type 0 219 2 277 261 134 34 chr11 149400721 149400732 -1382821 - L2 LINE L2 -123 3190 3182 225 299 45 67 chr11 149401333 149401467 -1382086 - L2 LINE L2 -556 2758 2628 311 298 161 29 chr11 149401523 149401728 -1381825 + MIR SINE MIR 20 251 -11 284 125 0 18 chr11 149403106 149403162 -1380391 + (TA)n Simple_repeat Simple_repeat 1 55 0 336 48 0 0 chr11 149403162 149403204 -1380349 + (CA)n Simple_repeat Simple_repeat 2 43 0 185 217 43 72 chr11 149404395 149404464 -1379089 - MIR SINE MIR -56 152 86 207 360 22 11 chr11 149404781 149404870 -1378683 - L2 LINE L2 -923 2391 2302 204 274 48 0 chr11 149406456 149406518 -1377035 + L2 LINE L2 3240 3304 -9 303 309 16 24 chr11 149408536 149408662 -1374891 + L2 LINE L2 3148 3272 0 624 269 43 39 chr11 149409981 149410237 -1373316 + MIR SINE MIR 5 261 -1 2386 97 0 0 chr11 149410362 149410661 -1372892 + AluSx SINE Alu 1 299 -13 188 321 147 38 chr11 149411831 149412015 -1371538 + L3 LINE CR1 1246 1449 -128 194 415 16 16 chr11 149413182 149413305 -1370248 + L3 LINE CR1 1416 1538 -39 302 305 31 31 chr11 149413355 149413483 -1370070 - MER5B DNA MER1_type -50 128 1 227 233 100 100 chr11 149418009 149418099 -1365454 - L2 LINE L2 -44 3228 3139 2118 128 0 16 chr11 149418571 149418877 -1364676 + AluSg SINE Alu 1 301 -9 2380 131 13 40 chr11 149418952 149419326 -1364227 - THE1B LTR MaLR 0 364 1 11724 101 29 3 chr11 149419326 149420866 -1362687 - THE1B-int LTR MaLR 0 1580 1 2244 126 62 39 chr11 149420866 149421222 -1362331 - THE1B LTR MaLR 0 364 1 1621 224 129 22 chr11 149421475 149421738 -1361815 - MLT1D LTR MaLR 0 505 272 1758 70 9 0 chr11 149421738 149421952 -1361601 - AluSc SINE Alu -14 295 80 1621 224 129 22 chr11 149421952 149422144 -1361409 - MLT1D LTR MaLR -233 272 1 243 299 143 53 chr11 149422177 149422403 -1361150 - L2 LINE L2 -2492 822 618 2255 122 140 8 chr11 149422403 149422781 -1360772 + MSTA LTR MaLR 1 428 0 243 299 143 53 chr11 149422781 149422972 -1360581 - L2 LINE L2 -2696 618 367 199 349 15 0 chr11 149423167 149423233 -1360320 - L2 LINE L2 -214 3058 2992 2414 56 7 23 chr11 149423254 149423581 -1359972 + AluSc SINE Alu 1 309 0 1863 150 59 27 chr11 149423643 149424016 -1359537 - MLT1B LTR MaLR -2 388 4 686 333 42 33 chr11 149424549 149425237 -1358316 + L1MEd LINE L1 561 1254 -4865 520 278 127 77 chr11 149425227 149425773 -1357780 + L1M4 LINE L1 3175 3692 -2454 * 1680 177 0 34 chr11 149425773 149426095 -1357458 - AluJo SINE Alu -1 311 1 520 278 127 77 chr11 149426095 149426151 -1357402 + L1M4 LINE L1 3692 3744 -2402 1839 24 0 0 chr11 149426151 149426360 -1357193 + AluY SINE Alu 99 307 -4 520 278 127 77 chr11 149426360 149426401 -1357152 + L1M4 LINE L1 3744 3781 -2365 1485 199 10 3 chr11 149426401 149426702 -1356851 + AluSx SINE Alu 1 303 -9 520 278 127 77 chr11 149426702 149426834 -1356719 + L1M4 LINE L1 3781 3991 -2155 3022 232 72 29 chr11 149426917 149427430 -1356123 - L1ME1 LINE L1 -5 6161 5671 2319 156 6 0 chr11 149427430 149427788 -1355765 + MER46B DNA MER2_type 2 236 0 3022 232 72 29 chr11 149427788 149428264 -1355289 - L1ME1 LINE L1 -495 5671 5133 690 142 16 0 chr11 149428266 149428393 -1355160 - ERVL-C1 LTR ERVL -1793 3971 3843 2450 203 32 24 chr11 149428393 149428896 -1354657 + MLT2B3 LTR ERVL 1 507 -47 320 163 0 0 chr11 149429023 149429072 -1354481 + MLT2B3 LTR ERVL 472 520 0 6777 198 60 32 chr11 149429072 149430881 -1352672 - ERVL-C1 LTR ERVL -1917 3847 1907 4337 226 40 28 chr11 149430861 149431951 -1351602 - ERVL-C1 LTR ERVL -3959 1805 631 * 3106 119 24 60 chr11 149431952 149432456 -1351097 + MER1A DNA MER1_type 44 529 0 465 265 92 118 chr11 149432470 149432892 -1350661 - ERVL-C1 LTR ERVL -5352 412 2 289 91 9 0 chr11 149432893 149432943 -1350610 - MLT2C1 LTR ERVL 0 397 359 1703 217 58 60 chr11 149432966 149433431 -1350122 - MER70B LTR ERVL -103 475 12 216 253 30 10 chr11 149433437 149433536 -1350017 + (TA)n Simple_repeat Simple_repeat 1 101 0 207 169 42 0 chr11 149433554 149433625 -1349928 + (TA)n Simple_repeat Simple_repeat 2 75 0 40 59 0 0 chr11 149433637 149433705 -1349848 + AT_rich Low_complexity Low_complexity 1 68 0 749 185 0 31 chr11 149433733 149433863 -1349690 - AluJb SINE Alu -29 283 158 1845 142 71 19 chr11 149433908 149434232 -1349321 - MLT2C1 LTR ERVL -52 345 5 635 264 77 24 chr11 149434239 149434447 -1349106 - L1MEc LINE L1 -2220 3995 3777 273 29 0 0 chr11 149434496 149434530 -1349023 + (CA)n Simple_repeat Simple_repeat 2 35 0 341 189 27 27 chr11 149434530 149434604 -1348949 - Tigger5 DNA MER2_type -5 2318 2245 2442 72 0 0 chr11 149434604 149434895 -1348658 - AluY SINE Alu -20 291 1 311 222 25 37 chr11 149434895 149434968 -1348585 + Tigger5 DNA MER2_type 2239 2312 -11 302 214 0 0 chr11 149434965 149435021 -1348532 - Tigger5 DNA MER2_type -2262 61 6 * 327 49 0 0 chr11 149435024 149435065 -1348488 + (TG)n Simple_repeat Simple_repeat 2 42 0 389 191 53 11 chr11 149435069 149435163 -1348390 - L1MEc LINE L1 -2451 3764 3667 2450 278 89 15 chr11 149435224 149436384 -1347169 - L1MEc LINE L1 -3959 2437 1192 732 216 72 0 chr11 149436422 149436589 -1346964 - LTR47A LTR ERVL 0 452 274 689 298 136 8 chr11 149436870 149437239 -1346314 - L1MEc LINE L1 -5903 493 78 256 215 92 55 chr11 149437542 149437770 -1345783 - L1M4 LINE L1 -252 5926 5689 558 272 79 13 chr11 149438043 149438221 -1345332 + MLT1J LTR MaLR 10 157 -252 246 256 44 44 chr11 149439227 149439317 -1344236 - MLT1J LTR MaLR -299 212 123 1852 295 95 11 chr11 149439467 149440521 -1343032 + L1ME LINE L1 4247 5388 -758 200 83 0 28 chr11 149440750 149440786 -1342767 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 15373 23 4 0 chr11 149440786 149443281 -1340272 - L1PA3 LINE L1 -24 6131 3624 411 257 49 16 chr11 149443279 149443521 -1340032 + L1ME LINE L1 5543 5858 -312 * 268 254 42 0 chr11 149443594 149443665 -1339888 - MER5A DNA MER1_type -78 111 38 557 335 0 12 chr11 149444068 149444241 -1339312 - MER5B DNA MER1_type -6 172 2 291 253 50 110 chr11 149444552 149444734 -1338819 + L2 LINE L2 3058 3228 -44 3652 165 27 6 chr11 149444965 149445359 -1338194 - L1MC1 LINE L1 -2 6331 5918 3529 180 8 10 chr11 149445359 149445965 -1337588 + MER6A DNA MER2_type 1 605 0 3652 165 27 6 chr11 149445965 149446193 -1337360 - L1MC1 LINE L1 -415 5918 5696 36448 34 4 0 chr11 149446293 149451405 -1332148 + L1PA3 LINE L1 1038 6167 0 1852 295 95 11 chr11 149451634 149452688 -1330865 - L1MC1 LINE L1 -758 5388 4247 246 256 44 44 chr11 149452835 149452925 -1330628 + MLT1J LTR MaLR 123 212 -299 558 272 79 13 chr11 149453931 149454109 -1329444 - MLT1J LTR MaLR -252 190 10 256 215 92 55 chr11 149454382 149454610 -1328943 + L1ME LINE L1 5689 5926 -252 683 297 135 11 chr11 149454913 149455283 -1328270 + L1MEc LINE L1 245 660 -5903 732 216 72 0 chr11 149455564 149455731 -1327822 + LTR47A LTR ERVL 274 452 0 1908 271 84 35 chr11 149455771 149456954 -1326599 + L1MEc LINE L1 1210 2604 -3959 387 196 52 10 chr11 149457015 149457112 -1326441 + L1MEc LINE L1 3834 3934 -2448 315 0 0 0 chr11 149457114 149457149 -1326404 + (CA)n Simple_repeat Simple_repeat 2 36 0 233 207 0 35 chr11 149457161 149457206 -1326347 + Tigger5 DNA MER2_type 6 48 -2275 321 231 33 33 chr11 149457206 149457289 -1326264 - Tigger5 DNA MER2_type 0 2323 2238 2442 72 0 0 chr11 149457289 149457580 -1325973 + AluY SINE Alu 1 291 -20 341 189 27 27 chr11 149457580 149457654 -1325899 + Tigger5 DNA MER2_type 2245 2318 -5 273 29 0 0 chr11 149457654 149457688 -1325865 + (TG)n Simple_repeat Simple_repeat 2 35 0 1651 247 53 11 chr11 149457842 149458373 -1325180 + L1M4 LINE L1 2162 2714 -3432 201 74 0 0 chr11 149458775 149458802 -1324751 + (TCTCCC)n Simple_repeat Simple_repeat 5 31 0 682 349 57 17 chr11 149459469 149460006 -1323547 + L1ME3A LINE L1 5295 5849 -321 296 238 62 0 chr11 149460441 149460521 -1323032 + Charlie7 DNA MER1_type 89 173 -2439 643 262 110 59 chr11 149461484 149462188 -1321365 + L1ME4a LINE L1 5347 6083 -38 31 0 0 0 chr11 149462526 149462557 -1320996 + AT_rich Low_complexity Low_complexity 1 31 0 409 333 59 23 chr11 149463014 149463317 -1320236 + L2 LINE L2 2441 2754 -560 197 368 199 5 chr11 149463687 149463888 -1319665 + L2 LINE L2 2737 2976 -338 256 147 44 59 chr11 149464450 149464518 -1319035 + MLT1J LTR MaLR 232 298 -213 316 209 306 8 chr11 149465225 149465359 -1318194 - MER3 DNA MER1_type -82 127 1 213 338 0 14 chr11 149465431 149465502 -1318051 + L2 LINE L2 3188 3257 -56 332 304 211 0 chr11 149465973 149466144 -1317409 + L2 LINE L2 2288 2494 -820 234 0 0 0 chr11 149467793 149467819 -1315734 + (A)n Simple_repeat Simple_repeat 1 26 0 34 55 0 0 chr11 149467846 149467901 -1315652 + AT_rich Low_complexity Low_complexity 1 55 0 14984 23 0 0 chr11 149467901 149470404 -1313149 - L1PA3 LINE L1 -18 6137 3624 328 294 46 16 chr11 149470418 149470612 -1312941 + L1ME LINE L1 5561 5760 -402 272 254 42 0 chr11 149470717 149470788 -1312765 - MER5A DNA MER1_type -78 111 38 573 335 0 12 chr11 149471191 149471364 -1312189 - MER5B DNA MER1_type -6 172 2 291 265 50 105 chr11 149471675 149471856 -1311697 + L2 LINE L2 3058 3228 -44 4605 155 26 11 chr11 149472087 149472481 -1311072 - L1MC1 LINE L1 -2 6331 5945 3244 180 8 10 chr11 149472481 149473087 -1310466 + MER6A DNA MER2_type 1 605 0 4605 155 26 11 chr11 149473087 149473523 -1310030 - L1MC1 LINE L1 -388 5945 5488 925 181 31 26 chr11 149473737 149474043 -1309510 - L1MC1 LINE L1 -743 5403 5186 441 115 0 0 chr11 149474553 149474631 -1308922 + (GA)n Simple_repeat Simple_repeat 1 78 0 752 276 34 78 chr11 149475536 149475804 -1307749 + MIR SINE MIR 7 262 0 1650 190 24 35 chr11 149478515 149478884 -1304669 - MLT1A1 LTR MaLR 0 365 1 230 242 45 15 chr11 149478934 149479000 -1304553 - MIR SINE MIR -18 244 177 612 321 34 10 chr11 149479832 149480041 -1303512 + MIR SINE MIR 48 261 -1 847 147 6 38 chr11 149480727 149480884 -1302669 + L1PA16 LINE L1 5993 6144 -22 312 109 18 0 chr11 149482025 149482080 -1301473 - L1MA10 LINE L1 -3 6331 6276 327 211 14 0 chr11 149482087 149482158 -1301395 - L1MA10 LINE L1 -90 6244 6173 * 4149 214 31 74 chr11 149482153 149482987 -1300566 - L1ME LINE L1 -671 5495 4627 1926 147 14 3 chr11 149482987 149483279 -1300274 - AluSx SINE Alu -17 295 1 4149 214 31 74 chr11 149483279 149483333 -1300220 - L1ME LINE L1 -1539 4627 4572 6312 27 0 1 chr11 149483333 149484070 -1299483 + L1PA3 LINE L1 5420 6155 0 4149 214 31 74 chr11 149484070 149484843 -1298710 - L1ME LINE L1 -1594 4572 3896 1761 161 42 11 chr11 149484843 149485129 -1298424 - AluJb SINE Alu -17 295 1 27 61 0 15 chr11 149485138 149485171 -1298382 + AT_rich Low_complexity Low_complexity 1 33 -32 2530 105 0 13 chr11 149485171 149485544 -1298009 - L1PB1 LINE L1 -2 6865 6498 27 61 0 15 chr11 149485544 149485576 -1297977 + AT_rich Low_complexity Low_complexity 33 65 0 13721 175 58 14 chr11 149485586 149491823 -1291730 - L1PB1 LINE L1 -360 6507 6 5673 158 15 23 chr11 149491831 149493667 -1289886 - L1PA16 LINE L1 -11 6155 4340 1583 127 41 73 chr11 149493667 149493982 -1289571 + AluJo SINE Alu 1 305 -7 5673 158 15 23 chr11 149493982 149494211 -1289342 - L1PA16 LINE L1 -1826 4340 4111 2739 245 77 41 chr11 149494216 149496750 -1286803 - L1MEc LINE L1 -2273 3942 1499 2223 114 7 0 chr11 149496750 149497049 -1286504 - AluSx SINE Alu -11 301 1 2739 245 77 41 chr11 149497049 149497226 -1286327 - L1MEc LINE L1 -4716 1499 1330 297 0 0 0 chr11 149497226 149497259 -1286294 + (CA)n Simple_repeat Simple_repeat 2 34 0 2739 245 77 41 chr11 149497259 149497347 -1286206 - L1MEc LINE L1 -4885 1330 851 * 29027 117 8 59 chr11 149497332 149499510 -1284043 - L1PA7 LINE L1 0 6154 3867 2410 93 0 6 chr11 149499510 149499823 -1283730 + AluY SINE Alu 1 311 0 29027 117 8 59 chr11 149499823 149504124 -1279429 - L1PA7 LINE L1 -2287 3867 12 2443 274 28 17 chr11 149504136 149504945 -1278608 - L1MEc LINE L1 -5527 869 52 422 344 117 64 chr11 149505005 149505365 -1278188 + L2 LINE L2 2894 3272 0 243 0 0 0 chr11 149505491 149505518 -1278035 + (CA)n Simple_repeat Simple_repeat 2 28 0 192 77 0 0 chr11 149505517 149505543 -1278010 + (TA)n Simple_repeat Simple_repeat 2 27 0 * 226 217 22 0 chr11 149505746 149505816 -1277737 + (TG)n Simple_repeat Simple_repeat 1 71 0 329 372 20 0 chr11 149505817 149505965 -1277588 + L2 LINE L2 3163 3313 0 301 323 38 8 chr11 149507480 149507613 -1275940 + L2 LINE L2 2065 2201 -1113 3003 246 117 30 chr11 149507908 149508610 -1274943 + L1M4 LINE L1 -99 719 -5719 2086 228 46 4 chr11 149508610 149509106 -1274447 - LTR53 LTR ERVL 0 519 3 3003 246 117 30 chr11 149509106 149509418 -1274135 + L1M4 LINE L1 719 1003 -5435 392 318 34 30 chr11 149509692 149510034 -1273519 + L1M4 LINE L1 2442 2815 -3906 261 311 20 20 chr11 149510208 149510356 -1273197 + L1M4 LINE L1 4505 4652 -1888 640 326 54 13 chr11 149510455 149510694 -1272859 - MIR SINE MIR -2 260 12 26930 35 14 1 chr11 149510847 149516876 -1266677 + L1PA3 LINE L1 1 6155 0 225 0 0 0 chr11 149516939 149516964 -1266589 + (T)n Simple_repeat Simple_repeat 1 25 0 332 304 211 0 chr11 149518614 149518785 -1264768 - L2 LINE L2 -820 2494 2288 213 338 0 14 chr11 149519256 149519327 -1264226 - L2 LINE L2 -56 3257 3188 316 209 306 8 chr11 149519399 149519533 -1264020 + MER3 DNA MER1_type 1 127 -82 256 147 44 59 chr11 149520240 149520308 -1263245 - MLT1J LTR MaLR -213 298 232 197 368 199 5 chr11 149520870 149521071 -1262482 - L2 LINE L2 -338 2976 2737 409 333 59 23 chr11 149521441 149521744 -1261809 - L2 LINE L2 -560 2754 2441 31 0 0 0 chr11 149522201 149522232 -1261321 + AT_rich Low_complexity Low_complexity 1 31 0 366 273 106 68 chr11 149522570 149523262 -1260291 - L1ME4a LINE L1 -38 6083 5366 266 230 68 0 chr11 149524237 149524311 -1259242 - Charlie7 DNA MER1_type -2439 173 95 491 343 63 13 chr11 149524752 149525289 -1258264 - L1ME3A LINE L1 -321 5918 5364 313 318 124 40 chr11 149525505 149525779 -1257774 - L1ME3A LINE L1 -1098 5117 4821 237 178 0 0 chr11 149525956 149526001 -1257552 + GA-rich Low_complexity Low_complexity 5 49 0 1444 261 53 28 chr11 149526385 149526919 -1256634 - L1MEc LINE L1 -3432 2783 2243 971 228 22 22 chr11 149526919 149527143 -1256410 - MER58A DNA MER1_type 0 224 1 1444 261 53 28 chr11 149527143 149527526 -1256027 - L1MEc LINE L1 -3972 2243 1871 241 209 0 75 chr11 149527529 149527596 -1255957 - MER68 LTR ERV1 -500 62 1 429 264 0 0 chr11 149527653 149527763 -1255790 - MER105 DNA DNA -46 158 49 1256 215 43 24 chr11 149527993 149528438 -1255115 + MLT1D LTR MaLR 3 496 -9 229 254 63 99 chr11 149528732 149528874 -1254679 + MIR SINE MIR 88 224 -38 495 73 0 0 chr11 149529081 149529149 -1254404 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 543 287 93 27 chr11 149529434 149529981 -1253572 - L1MEc LINE L1 -4975 1230 648 351 0 0 0 chr11 149530180 149530219 -1253334 + (T)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr11 149530222 149530244 -1253309 + GC_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr11 149530394 149530423 -1253130 + AT_rich Low_complexity Low_complexity 1 29 0 5531 139 60 5 chr11 149531710 149532181 -1251372 + L1PBa LINE L1 1785 2229 -4634 1957 140 10 13 chr11 149532181 149532317 -1251236 + AluSx SINE Alu 1 136 -176 233 57 29 0 chr11 149532317 149532352 -1251201 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1957 140 10 13 chr11 149532352 149532522 -1251031 + AluSx SINE Alu 136 306 -6 5531 139 60 5 chr11 149532522 149533154 -1250399 + L1PBa LINE L1 2229 2949 -3914 313 121 15 15 chr11 149534086 149534152 -1249401 + CT-rich Low_complexity Low_complexity 3 68 0 215 326 11 11 chr11 149534360 149534452 -1249101 - MIR3 SINE MIR -50 158 67 26 0 0 0 chr11 149534809 149534835 -1248718 + AT_rich Low_complexity Low_complexity 1 26 0 405 0 0 0 chr11 149535073 149535118 -1248435 + (T)n Simple_repeat Simple_repeat 1 45 0 31 0 0 0 chr11 149535292 149535323 -1248230 + AT_rich Low_complexity Low_complexity 1 31 0 1823 174 0 20 chr11 149535618 149535917 -1247636 - 7SLRNA srpRNA srpRNA -27 293 1 2133 115 3 0 chr11 149535948 149536235 -1247318 + AluSx SINE Alu 5 292 -20 308 248 216 16 chr11 149537367 149537492 -1246061 - L3 LINE CR1 -26 1551 1402 22 35 0 0 chr11 149537492 149537521 -1246032 + AT_rich Low_complexity Low_complexity 1 29 0 1716 167 9 28 chr11 149537521 149537839 -1245714 - AluJo SINE Alu 0 312 1 318 284 59 0 chr11 149537839 149537941 -1245612 - L3 LINE CR1 -163 1414 1307 2094 297 96 50 chr11 149538150 149539122 -1244431 + L2 LINE L2 1714 2777 -536 1333 174 38 0 chr11 149539122 149539415 -1244138 + L1MA9 LINE L1 6000 6303 -9 2094 297 96 50 chr11 149539415 149539976 -1243577 + L2 LINE L2 2777 3311 -2 1977 140 13 0 chr11 149540062 149540370 -1243183 - AluJb SINE Alu 0 312 1 234 223 146 15 chr11 149540694 149540824 -1242729 - HAL1b LINE L1 -9 1339 1193 770 259 78 37 chr11 149541028 149541744 -1241809 - L1ME LINE L1 -4996 1074 520 356 303 44 48 chr11 149541945 149542173 -1241380 - L1ME LINE L1 -5604 466 194 1768 168 24 74 chr11 149542173 149542549 -1241004 + MLT2C1 LTR ERVL 1 355 -42 267 31 0 0 chr11 149542549 149542581 -1240972 + (TG)n Simple_repeat Simple_repeat 2 33 0 1768 168 24 74 chr11 149542581 149542622 -1240931 + MLT2C1 LTR ERVL 355 397 0 356 303 44 48 chr11 149542622 149542799 -1240754 - L1ME LINE L1 -5876 194 18 493 314 57 44 chr11 149542806 149543121 -1240432 - L1M4 LINE L1 -2300 3846 3528 387 293 87 36 chr11 149543164 149543717 -1239836 - L1M4 LINE L1 -2903 3243 2663 1571 177 109 53 chr11 149544575 149544970 -1238583 + MER47B DNA MER2_type 2 418 0 8944 199 79 31 chr11 149544973 149547426 -1236127 + L1MDa LINE L1 100 2675 -3865 1905 126 0 3 chr11 149547433 149547743 -1235810 - L1MA5 LINE L1 -347 5953 5645 8612 154 33 9 chr11 149547743 149549284 -1234269 - Tigger2 DNA MER2_type 0 2718 1141 2306 98 3 0 chr11 149549284 149549589 -1233964 - AluSp SINE Alu -7 306 1 2679 241 70 2 chr11 149549591 149550574 -1232979 + L1MDa LINE L1 2691 3740 -2800 6406 146 14 1 chr11 149550574 149551946 -1231607 + L1MA3 LINE L1 4913 6305 0 730 229 31 98 chr11 149552016 149552374 -1231179 + L1MDa LINE L1 3813 4146 -2394 1711 168 25 6 chr11 149552374 149552701 -1230852 + MLT1A1 LTR MaLR 33 365 0 4562 202 35 55 chr11 149552701 149553741 -1229812 + L1MB4 LINE L1 4183 5242 -1332 1845 136 0 0 chr11 149553741 149553999 -1229554 + AluSx SINE Alu 38 295 -17 4562 202 35 55 chr11 149553999 149555028 -1228525 + L1MB4 LINE L1 5242 6199 -375 2267 120 0 0 chr11 149555028 149555328 -1228225 - AluSx SINE Alu -12 300 1 4562 202 35 55 chr11 149555328 149555696 -1227857 + L1MB4 LINE L1 6199 6573 -1 404 300 57 0 chr11 149555846 149555986 -1227567 + L2 LINE L2 3165 3312 -1 1016 233 87 13 chr11 149558887 149559265 -1224288 - MER110A LTR ERV1 0 468 63 695 263 72 0 chr11 149561096 149561300 -1222253 - MIR SINE MIR -21 241 25 255 61 0 0 chr11 149562297 149562330 -1221223 + (TA)n Simple_repeat Simple_repeat 2 34 0 28 0 0 0 chr11 149562586 149562614 -1220939 + AT_rich Low_complexity Low_complexity 1 28 0 201 348 59 42 chr11 149562952 149563070 -1220483 - MIR3 SINE MIR -75 133 14 257 189 19 0 chr11 149563273 149563326 -1220227 - MER63 DNA MER1_type -33 1028 975 422 183 0 0 chr11 149563326 149563397 -1220156 - MER63 DNA MER1_type -313 749 679 575 205 60 36 chr11 149563828 149563994 -1219559 - MIR SINE MIR 0 262 93 700 245 31 10 chr11 149565258 149565450 -1218103 - MIR SINE MIR -10 252 57 295 328 45 15 chr11 149565501 149565537 -1218016 - MIR SINE MIR -112 150 117 2368 247 33 10 chr11 149565537 149566117 -1217436 + MLT1E LTR MaLR 1 593 0 295 328 45 15 chr11 149566117 149566214 -1217339 - MIR SINE MIR -145 117 13 1623 88 0 0 chr11 149566453 149566657 -1216896 - AluSg/x SINE Alu -9 303 100 2264 100 24 0 chr11 149567480 149567771 -1215782 - AluSx SINE Alu -14 298 1 266 245 0 82 chr11 149567814 149567912 -1215641 - L1MC4 LINE L1 -1339 6703 6614 431 129 0 0 chr11 149568817 149568879 -1214674 - MER1B DNA MER1_type 0 333 272 1477 138 0 9 chr11 149568882 149569106 -1214447 - MER1B DNA MER1_type -75 222 1 1607 173 10 13 chr11 149569776 149570082 -1213471 - AluJb SINE Alu -6 306 2 403 325 0 0 chr11 149570464 149570578 -1212975 - MER94 DNA DNA -1 133 20 595 276 31 5 chr11 149571690 149571882 -1211671 - MIR SINE MIR 0 262 66 21 71 0 0 chr11 149572135 149572177 -1211376 + AT_rich Low_complexity Low_complexity 1 42 0 276 278 78 17 chr11 149572648 149572763 -1210790 - MLT1L LTR MaLR -26 589 468 236 278 189 26 chr11 149572800 149572991 -1210562 - MLT1L LTR MaLR -215 400 179 * 6264 174 42 21 chr11 149572990 149573873 -1209680 + Charlie1 DNA MER1_type 1450 2370 -391 195 42 0 0 chr11 149573873 149573897 -1209656 + (TC)n Simple_repeat Simple_repeat 2 25 0 6264 174 42 21 chr11 149573897 149574297 -1209256 + Charlie1 DNA MER1_type 2370 2760 -1 395 195 87 47 chr11 149574298 149574447 -1209106 - MLT1L LTR MaLR -460 155 1 320 172 47 0 chr11 149574662 149574726 -1208827 + AluJ/FLAM SINE Alu 1 67 -235 219 327 45 59 chr11 149574978 149575180 -1208373 + L2 LINE L2 2823 3021 -251 243 0 0 0 chr11 149576713 149576740 -1206813 + (T)n Simple_repeat Simple_repeat 1 27 0 355 258 21 0 chr11 149577202 149577295 -1206258 - MER94 DNA DNA -25 109 15 405 329 99 48 chr11 149579098 149579514 -1204039 - L2 LINE L2 -25 3247 2811 201 404 0 10 chr11 149580172 149580276 -1203277 + L2 LINE L2 2995 3097 -175 405 276 44 110 chr11 149580796 149581024 -1202529 + MLT1J LTR MaLR 106 318 -193 209 259 37 0 chr11 149581240 149581294 -1202259 - L2 LINE L2 -10 3303 3248 217 214 21 159 chr11 149581791 149581902 -1201651 + L2 LINE L2 3145 3270 -2 2817 79 3 11 chr11 149581902 149582280 -1201273 + THE1C LTR MaLR 1 375 0 217 214 21 159 chr11 149582280 149582296 -1201257 + L2 LINE L2 3270 3253 -19 3251 203 33 6 chr11 149582296 149582932 -1200621 - MER82 DNA MER2_type 0 653 1 217 214 21 159 chr11 149582932 149582948 -1200605 + L2 LINE L2 3252 3269 -3 230 270 0 14 chr11 149584065 149584139 -1199414 - L1MC4 LINE L1 -1337 6705 6633 216 189 38 19 chr11 149584166 149584219 -1199334 - L2 LINE L2 -25 3288 3235 2543 48 0 0 chr11 149584544 149584866 -1198687 + AluY SINE Alu 1 322 0 211 237 34 0 chr11 149585626 149585685 -1197868 + L2 LINE L2 2999 3059 -213 687 152 9 0 chr11 149586943 149587048 -1196505 - MSTD LTR MaLR -290 106 1 450 0 0 0 chr11 149587099 149587149 -1196404 + (TA)n Simple_repeat Simple_repeat 2 51 0 212 240 0 20 chr11 149587912 149587962 -1195591 - L2 LINE L2 -15 3257 3209 1816 227 10 24 chr11 149588048 149588466 -1195087 + MLT2D LTR ERVL 3 414 0 2358 73 0 63 chr11 149588719 149589035 -1194518 + AluSc SINE Alu 1 296 -13 380 91 0 0 chr11 149589035 149589090 -1194463 + AluSc SINE Alu 245 299 0 2343 125 28 17 chr11 149589382 149589742 -1193811 - THE1B LTR MaLR 0 364 1 251 314 49 49 chr11 149589743 149589928 -1193625 + L2 LINE L2 2271 2455 -859 485 244 94 6 chr11 149590162 149590368 -1193185 - MLT1F1 LTR MaLR -2 565 304 433 257 59 44 chr11 149590366 149590502 -1193051 - MLT1F1 LTR MaLR -394 148 11 * 271 327 31 12 chr11 149590843 149591005 -1192548 + L2 LINE L2 3149 3313 0 1352 261 80 21 chr11 149591072 149591528 -1192025 - MLT1H1 LTR MaLR -64 491 1 303 345 30 6 chr11 149591599 149591767 -1191786 + L3 LINE CR1 455 626 -951 369 271 88 18 chr11 149591801 149591993 -1191560 + MER20 DNA MER1_type 5 219 0 786 303 232 25 chr11 149592053 149592565 -1190988 + L3 LINE CR1 870 1487 -90 234 0 0 0 chr11 149595507 149595533 -1188020 + (TG)n Simple_repeat Simple_repeat 2 27 0 180 0 0 0 chr11 149596250 149596270 -1187283 + (TC)n Simple_repeat Simple_repeat 1 20 0 481 300 50 0 chr11 149596748 149596928 -1186625 + L2 LINE L2 2218 2406 -908 332 119 17 0 chr11 149597750 149597809 -1185744 + GA-rich Low_complexity Low_complexity 1 60 0 332 271 42 23 chr11 149598255 149598491 -1185062 + LTR16A LTR ERVL 91 372 -78 535 265 119 5 chr11 149598588 149598773 -1184780 + ERVL LTR ERVL 37 242 -4754 388 304 39 33 chr11 149598833 149599014 -1184539 + ERVL LTR ERVL 333 514 -4482 1207 324 79 78 chr11 149599056 149599956 -1183597 + ERVL LTR ERVL 3588 4845 -508 3351 113 58 34 chr11 149600973 149601360 -1182193 - L1PB3 LINE L1 -2 6152 5747 198 0 0 0 chr11 149601360 149601382 -1182171 + (CA)n Simple_repeat Simple_repeat 2 23 0 3351 113 58 34 chr11 149601382 149601549 -1182004 - L1PB3 LINE L1 -407 5747 5585 775 302 9 0 chr11 149602513 149602738 -1180815 - MIR SINE MIR -16 246 20 268 231 87 48 chr11 149603442 149603546 -1180007 + MIR SINE MIR 85 192 -70 580 255 21 27 chr11 149603686 149603874 -1179679 - LTR16C LTR ERVL 0 491 305 353 254 61 79 chr11 149603890 149604055 -1179498 - LTR16C LTR ERVL -329 162 1 256 321 18 91 chr11 149604108 149604273 -1179280 - MER5B DNA MER1_type 0 178 26 750 281 75 27 chr11 149604951 149605367 -1178186 - LTR50 LTR ERVL -111 684 401 347 203 127 23 chr11 149605363 149605563 -1177990 - LTR50 LTR ERVL -519 276 1 * 195 353 89 72 chr11 149605585 149605945 -1177608 + L2 LINE L2 2902 3267 -5 339 299 122 35 chr11 149606534 149606731 -1176822 - MIR SINE MIR -15 247 34 216 374 0 0 chr11 149607063 149607154 -1176399 + MIR3 SINE MIR 100 190 -18 1831 209 72 33 chr11 149608007 149608490 -1175063 - MLT1D LTR MaLR -1 504 3 373 308 0 30 chr11 149609318 149609451 -1174102 - L3 LINE CR1 -6 1571 1443 313 296 184 0 chr11 149609678 149609901 -1173652 - L1ME LINE L1 -5282 788 525 539 210 147 0 chr11 149614736 149614879 -1168674 - MER103 DNA DNA 0 166 3 3137 162 16 12 chr11 149614962 149615475 -1168078 + MLT2B2 LTR ERVL 1 515 0 751 230 52 5 chr11 149616749 149616940 -1166613 + MER3 DNA MER1_type 9 208 -1 369 0 0 0 chr11 149617010 149617051 -1166502 + (TG)n Simple_repeat Simple_repeat 1 41 0 680 153 7 39 chr11 149617849 149618139 -1165414 + CT-rich Low_complexity Low_complexity 1 280 0 180 0 0 0 chr11 149618163 149618183 -1165370 + (TTCC)n Simple_repeat Simple_repeat 3 22 0 488 278 30 73 chr11 149618620 149618854 -1164699 - MIR SINE MIR -12 250 27 215 282 74 80 chr11 149618925 149619088 -1164465 - MIR SINE MIR -50 212 51 299 328 149 5 chr11 149621509 149621710 -1161843 - MIR SINE MIR -12 250 21 611 254 94 60 chr11 149622420 149622989 -1160564 - L2 LINE L2 0 3313 2730 265 274 0 0 chr11 149623849 149623922 -1159631 + T-rich Low_complexity Low_complexity 1 73 0 194 314 43 0 chr11 149624036 149624106 -1159447 + MIR SINE MIR 117 189 -73 309 314 43 28 chr11 149625479 149625740 -1157813 - MLT1I LTR MaLR -3 406 113 189 302 0 0 chr11 149626124 149626187 -1157366 - MIR SINE MIR -32 230 168 275 260 39 39 chr11 149626316 149626420 -1157133 + MIR3 SINE MIR 82 185 -23 367 273 188 23 chr11 149627107 149627283 -1156270 - MIR SINE MIR -15 247 43 278 281 144 20 chr11 149627426 149627572 -1155981 + L2 LINE L2 3109 3272 0 211 273 162 0 chr11 149627780 149627879 -1155674 - L2 LINE L2 -7 3306 3192 2210 144 31 0 chr11 149628307 149628660 -1154893 - THE1B LTR MaLR 0 364 1 1880 180 55 3 chr11 149629087 149629431 -1154122 - MLT1A1 LTR MaLR -3 362 1 2397 114 0 0 chr11 149629546 149629854 -1153699 + AluSx SINE Alu 1 308 -4 213 39 0 0 chr11 149630053 149630079 -1153474 + (A)n Simple_repeat Simple_repeat 1 26 0 508 308 161 43 chr11 149631327 149631700 -1151853 - MLT1J LTR MaLR -74 437 21 24 0 0 0 chr11 149631881 149631905 -1151648 + AT_rich Low_complexity Low_complexity 1 24 0 689 296 79 4 chr11 149632268 149632508 -1151045 - MIR SINE MIR 0 262 5 317 289 12 0 chr11 149633040 149633123 -1150430 - L2 LINE L2 -3 3269 3186 467 259 38 0 chr11 149634451 149634582 -1148971 + MIR SINE MIR 56 191 -71 7027 176 126 28 chr11 149634585 149636096 -1147457 - MER52A LTR ERV1 0 1755 1 251 146 18 0 chr11 149636373 149636428 -1147125 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 306 340 118 27 chr11 149636429 149636726 -1146827 - L2 LINE L2 0 3272 2949 296 330 27 9 chr11 149636806 149636918 -1146635 - MIR SINE MIR -64 144 31 3217 158 81 2 chr11 149636998 149637138 -1146415 - L1MA9 LINE L1 -1 6311 6183 276 30 0 0 chr11 149637138 149637171 -1146382 + (TG)n Simple_repeat Simple_repeat 1 33 0 3217 158 81 2 chr11 149637171 149637639 -1145914 - L1MA9 LINE L1 -129 6183 5655 598 282 28 29 chr11 149638773 149639069 -1144484 - L1MC4a LINE L1 -151 5970 5669 10795 88 6 1 chr11 149639232 149641480 -1142073 + L1PA7 LINE L1 3893 6154 0 241 267 139 0 chr11 149641580 149641666 -1141887 - MIR3 SINE MIR -45 163 66 370 262 74 33 chr11 149641791 149641913 -1141640 + MIR3 SINE MIR 61 187 -21 2202 119 0 0 chr11 149641986 149642280 -1141273 - AluSx SINE Alu -14 298 5 323 98 0 0 chr11 149642280 149642321 -1141232 - Alu SINE Alu -262 41 1 21 71 0 0 chr11 149642759 149642801 -1140752 + AT_rich Low_complexity Low_complexity 1 42 0 401 316 41 12 chr11 149642869 149643040 -1140513 + MIR SINE MIR 14 189 -73 1687 269 125 12 chr11 149643669 149644230 -1139323 - MLT2E LTR ERVL -2 626 3 300 243 56 28 chr11 149644364 149644471 -1139082 - L1ME1 LINE L1 0 6166 6057 3151 252 87 25 chr11 149644476 149645255 -1138298 - L1MEc LINE L1 -1403 4812 4082 2106 142 7 0 chr11 149645255 149645557 -1137996 - AluSx SINE Alu -8 304 1 3151 252 87 25 chr11 149645557 149646290 -1137263 - L1MEc LINE L1 -2133 4082 3207 1024 243 25 51 chr11 149646317 149646406 -1137147 - L1MEc LINE L1 -3129 3086 2996 947 241 91 5 chr11 149646406 149646626 -1136927 + MER8 DNA MER2_type 1 239 0 1024 243 25 51 chr11 149646626 149647006 -1136547 - L1MEc LINE L1 -3219 2996 2629 1478 285 75 21 chr11 149647106 149647907 -1135646 - L1MEc LINE L1 -4018 2378 1535 273 29 0 0 chr11 149647907 149647941 -1135612 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 4010 21 0 0 chr11 149647941 149648364 -1135189 - SVA Other Other -22 1364 942 1745 170 7 16 chr11 149648608 149648914 -1134639 - AluJo SINE Alu -9 303 1 185 353 29 10 chr11 149648980 149649082 -1134471 - L3 LINE CR1 -634 943 840 264 208 0 42 chr11 149649177 149649249 -1134304 - L1ME1 LINE L1 -199 5922 5854 240 213 64 75 chr11 149649865 149649959 -1133594 + MIR SINE MIR 120 212 -50 222 238 16 0 chr11 149650002 149650065 -1133488 - L3 LINE CR1 -849 728 665 1844 148 28 3 chr11 149650115 149650406 -1133147 - AluSx SINE Alu -12 300 3 2280 112 0 19 chr11 149650505 149650819 -1132734 + AluSc SINE Alu 1 308 -1 373 218 121 48 chr11 149652202 149652326 -1131227 - L2 LINE L2 0 3272 3140 189 303 81 0 chr11 149652544 149652643 -1130910 - L2 LINE L2 -251 3021 2915 9496 205 69 15 chr11 149652850 149653131 -1130422 - L1MA4A LINE L1 -1 7004 6740 2099 77 0 35 chr11 149653131 149653442 -1130111 - AluY SINE Alu -11 300 1 9496 205 69 15 chr11 149653442 149656907 -1126646 - L1MA4A LINE L1 -265 6740 2876 749 211 0 7 chr11 149656915 149657062 -1126491 - FRAM SINE Alu -30 146 1 15482 189 10 15 chr11 149657064 149659877 -1123676 - L1MA4A LINE L1 -3956 2893 94 728 130 0 0 chr11 149659945 149660060 -1123493 - L1MA5 LINE L1 -2 6298 6184 232 286 115 81 chr11 149661184 149661418 -1122135 + L2 LINE L2 956 1197 -2117 390 284 120 24 chr11 149661422 149661700 -1121853 - LTR16B LTR ERVL 0 464 104 1223 299 196 35 chr11 149661841 149662587 -1120966 + L2 LINE L2 1214 1839 -1475 1887 177 36 17 chr11 149662587 149662943 -1120610 - MLT1A1 LTR MaLR 0 365 3 1223 299 196 35 chr11 149662943 149663464 -1120089 + L2 LINE L2 1839 2685 -629 1035 290 97 19 chr11 149663515 149663977 -1119576 - MLT1H1 LTR MaLR -25 530 33 1001 244 131 36 chr11 149663998 149664420 -1119133 - MLT1D LTR MaLR -28 460 1 295 341 205 10 chr11 149664509 149664933 -1118620 + L2 LINE L2 2790 3304 -9 292 276 11 0 chr11 149665361 149665448 -1118105 + L2 LINE L2 3226 3313 0 204 234 31 16 chr11 149666904 149666968 -1116585 - MIR SINE MIR -60 148 84 393 22 0 0 chr11 149667215 149667261 -1116292 + (CA)n Simple_repeat Simple_repeat 1 46 0 1271 229 157 14 chr11 149667460 149667901 -1115652 + MLT1D LTR MaLR 1 504 -1 292 363 45 10 chr11 149668004 149668205 -1115348 - MIR SINE MIR -10 252 45 281 291 12 0 chr11 149669542 149669628 -1113925 - L2 LINE L2 0 3313 3227 21 0 0 0 chr11 149669865 149669886 -1113667 + AT_rich Low_complexity Low_complexity 1 21 0 366 325 99 24 chr11 149669997 149670249 -1113304 + L3 LINE CR1 1213 1483 -94 195 42 0 0 chr11 149674620 149674644 -1108909 + (TGG)n Simple_repeat Simple_repeat 1 24 0 184 237 0 0 chr11 149674826 149674864 -1108689 - L2 LINE L2 -559 2755 2718 252 0 0 0 chr11 149675187 149675215 -1108338 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1920 145 14 3 chr11 149675217 149675500 -1108053 - AluJb SINE Alu -25 287 2 589 368 28 0 chr11 149675531 149675781 -1107772 - MIR SINE MIR -2 260 4 222 232 10 20 chr11 149677752 149677851 -1105702 + CT-rich Low_complexity Low_complexity 2 99 0 21 0 0 0 chr11 149677905 149677926 -1105627 + AT_rich Low_complexity Low_complexity 1 21 0 2273 178 10 0 chr11 149677932 149678331 -1105222 - L1PA16 LINE L1 -7 6159 5757 21 0 0 0 chr11 149678416 149678437 -1105116 + AT_rich Low_complexity Low_complexity 1 21 0 403 313 116 18 chr11 149678675 149678950 -1104603 + L2 LINE L2 2608 2909 -405 234 294 0 28 chr11 149679150 149679259 -1104294 + L2 LINE L2 3144 3249 -64 289 301 186 35 chr11 149679537 149679736 -1103817 + L2 LINE L2 3044 3272 0 225 305 137 0 chr11 149680223 149680318 -1103235 + MIR SINE MIR 68 175 -87 227 267 0 27 chr11 149681448 149681523 -1102030 + GA-rich Low_complexity Low_complexity 2 74 0 4531 148 22 16 chr11 149682133 149682894 -1100659 - LTR39 LTR ERV1 -17 766 1 217 254 197 0 chr11 149683072 149683143 -1100410 + MIR SINE MIR 15 99 -163 2153 133 62 28 chr11 149683216 149683568 -1099985 - THE1B LTR MaLR 0 364 1 402 253 193 7 chr11 149684112 149684262 -1099291 - MER5A DNA MER1_type -3 186 9 189 0 0 0 chr11 149684812 149684833 -1098720 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 1608 183 42 3 chr11 149685093 149685382 -1098171 - AluJo SINE Alu -6 306 7 498 262 35 29 chr11 149685429 149685601 -1097952 - MIR SINE MIR -20 242 70 1033 247 115 56 chr11 149686355 149686816 -1096737 + MLT1D LTR MaLR 1 488 -17 2308 192 14 21 chr11 149687176 149687604 -1095949 + MSTB LTR MaLR 1 425 -1 181 244 0 0 chr11 149688403 149688448 -1095105 + L2 LINE L2 2235 2279 -1035 480 293 28 11 chr11 149688710 149688891 -1094662 + MIR SINE MIR 78 261 -1 299 317 44 33 chr11 149688944 149689124 -1094429 + L2 LINE L2 2631 2812 -502 412 309 108 33 chr11 149692081 149692414 -1091139 + L2 LINE L2 2915 3272 0 282 29 0 0 chr11 149692520 149692555 -1090998 + (TG)n Simple_repeat Simple_repeat 2 36 0 524 252 4 0 chr11 149692570 149692801 -1090752 + (TA)n Simple_repeat Simple_repeat 1 232 0 258 280 65 52 chr11 149692816 149692988 -1090565 - MIR SINE MIR -58 204 16 2733 145 15 51 chr11 149694497 149694694 -1088859 - L1MA7 LINE L1 -2 6289 6086 2039 113 0 24 chr11 149694694 149694985 -1088568 - AluSg SINE Alu -26 284 1 2733 145 15 51 chr11 149694985 149695317 -1088236 - L1MA7 LINE L1 -205 6086 5779 539 238 35 29 chr11 149695618 149695790 -1087763 + MER5B DNA MER1_type 3 175 -3 241 241 83 19 chr11 149695828 149695936 -1087617 - HAL1 LINE L1 -181 2326 2212 295 78 39 0 chr11 149695942 149695993 -1087560 + (TA)n Simple_repeat Simple_repeat 2 54 0 314 216 21 0 chr11 149696054 149696151 -1087402 + (TA)n Simple_repeat Simple_repeat 2 100 0 260 253 11 22 chr11 149696381 149696472 -1087081 - HAL1 LINE L1 -343 2164 2075 896 275 124 70 chr11 149696727 149697596 -1085957 - HAL1 LINE L1 -608 1899 978 198 103 0 0 chr11 149697596 149697625 -1085928 + (ATG)n Simple_repeat Simple_repeat 3 31 0 896 275 124 70 chr11 149697625 149697661 -1085892 - HAL1 LINE L1 -1529 978 945 246 361 41 0 chr11 149698423 149698545 -1085008 - MIR3 SINE MIR -1 207 81 496 318 46 73 chr11 149702055 149702467 -1081086 + L2 LINE L2 2226 2626 -688 810 83 7 21 chr11 149702486 149702630 -1080923 + (TCTA)n Simple_repeat Simple_repeat 1 142 0 294 244 13 0 chr11 149702778 149702856 -1080697 + MER116 DNA Mariner 1 79 -1 614 250 83 40 chr11 149702861 149703170 -1080383 - L1MC4a LINE L1 -372 5799 5671 6642 28 0 1 chr11 149703249 149703265 -1080288 + L1P1 LINE L1 4603 4618 -1537 5685 37 0 3 chr11 149703265 149703947 -1079606 - L1PA2 LINE L1 0 6155 5476 6642 28 0 1 chr11 149703947 149704800 -1078753 + L1PA2 LINE L1 4618 5471 -684 270 278 141 61 chr11 149704800 149704998 -1078555 + L2 LINE L2 2721 2934 -380 502 265 92 11 chr11 149705078 149705263 -1078290 + MER63A DNA MER1_type 1 200 -10 246 62 0 0 chr11 149705438 149705470 -1078083 + (CA)n Simple_repeat Simple_repeat 2 33 0 362 306 9 9 chr11 149705477 149705588 -1077965 + L2 LINE L2 3199 3309 -4 582 285 75 15 chr11 149706143 149706410 -1077143 + L1MC4 LINE L1 7760 8042 0 251 324 0 78 chr11 149706430 149706572 -1076981 - MER5B DNA MER1_type -25 153 23 626 251 130 54 chr11 149706574 149706981 -1076572 - LTR16A1 LTR ERVL -8 449 12 889 290 118 16 chr11 149707394 149707759 -1075794 - LTR16C LTR ERVL 0 491 90 204 297 62 47 chr11 149707834 149707962 -1075591 - MIR SINE MIR -114 148 19 216 0 0 0 chr11 149708777 149708801 -1074752 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 223 295 0 16 chr11 149708890 149708951 -1074602 + L3 LINE CR1 1516 1575 -2 1752 179 12 38 chr11 149709040 149709386 -1074167 - MER44D DNA MER2_type -1 608 2 615 272 37 53 chr11 149709609 149709855 -1073698 + MIR SINE MIR 9 250 -12 186 133 0 0 chr11 149710684 149710714 -1072839 + (GGGA)n Simple_repeat Simple_repeat 1 30 0 227 214 0 0 chr11 149711133 149711175 -1072378 + MIR SINE MIR 109 150 -58 352 301 61 6 chr11 149711337 149711500 -1072053 - MIR SINE MIR -14 248 77 363 267 156 7 chr11 149711902 149712037 -1071516 - MIR SINE MIR -46 216 62 245 248 277 0 chr11 149712565 149712706 -1070847 + MER5A DNA MER1_type 10 189 0 476 268 0 0 chr11 149712761 149712873 -1070680 + MIR SINE MIR 45 156 -106 377 372 33 0 chr11 149714757 149714937 -1068616 - MIR SINE MIR -24 238 53 421 115 106 39 chr11 149715139 149715243 -1068310 - MER53 DNA DNA -24 165 55 299 226 0 0 chr11 149716073 149716135 -1067418 - MIR SINE MIR -62 146 85 2224 102 3 0 chr11 149717596 149717901 -1065652 + AluSg SINE Alu 1 306 -4 1948 138 61 25 chr11 149717903 149718230 -1065323 - MLT1A1 LTR MaLR -4 361 23 215 358 98 8 chr11 149718876 149718999 -1064554 + MIR SINE MIR 20 153 -109 22 80 0 0 chr11 149719376 149719426 -1064127 + AT_rich Low_complexity Low_complexity 1 50 0 423 0 0 0 chr11 149719933 149719980 -1063573 + (TG)n Simple_repeat Simple_repeat 2 48 0 196 250 135 0 chr11 149720892 149720944 -1062609 - MIR SINE MIR -87 175 117 228 388 69 47 chr11 149723483 149723803 -1059750 + L2 LINE L2 2925 3251 -21 360 323 139 20 chr11 149723897 149724098 -1059455 - MIR SINE MIR -7 255 31 198 294 0 20 chr11 149725301 149725352 -1058201 - L2 LINE L2 -86 3186 3137 197 65 32 0 chr11 149726493 149726524 -1057029 + (TATATG)n Simple_repeat Simple_repeat 3 34 0 268 331 74 8 chr11 149729384 149729505 -1054048 - MIR SINE MIR -111 151 23 1390 223 7 10 chr11 149729547 149729852 -1053701 - L1MB1 LINE L1 -260 5908 5605 547 158 63 28 chr11 149729851 149730057 -1053496 + L1MB1 LINE L1 5912 6156 -33 * 223 301 81 41 chr11 149730230 149730353 -1053200 - MIR SINE MIR -55 207 80 2922 173 47 0 chr11 149732175 149732746 -1050807 - L1MB1 LINE L1 0 6168 5571 22 0 0 0 chr11 149732851 149732873 -1050680 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr11 149735351 149735373 -1048180 + (TA)n Simple_repeat Simple_repeat 2 23 0 862 211 37 37 chr11 149735408 149735626 -1047927 - MER20 DNA MER1_type -1 218 1 195 268 106 18 chr11 149735627 149735773 -1047780 - MIR SINE MIR -35 227 16 2118 110 0 3 chr11 149735911 149736235 -1047318 - AluSc SINE Alu 0 309 1 604 353 65 52 chr11 149736705 149737375 -1046178 + L2 LINE L2 2579 3258 -14 477 225 33 60 chr11 149739389 149739571 -1043982 + MIR SINE MIR 14 190 -72 2317 82 0 22 chr11 149739588 149739904 -1043649 - AluSc SINE Alu 0 309 1 206 311 61 67 chr11 149739904 149740068 -1043485 - L2 LINE L2 -107 3206 3044 4587 137 20 5 chr11 149740077 149740821 -1042732 + L1MA3 LINE L1 5545 6299 -6 21 0 0 0 chr11 149740828 149740849 -1042704 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr11 149741359 149741393 -1042160 + AT_rich Low_complexity Low_complexity 1 34 0 3130 154 20 14 chr11 149742412 149742965 -1040588 - L1MC1 LINE L1 -1 6332 5777 894 190 77 5 chr11 149743010 149743205 -1040348 - MER3 DNA MER1_type 0 209 1 255 270 36 45 chr11 149743239 149743314 -1040239 - MIR SINE MIR -13 249 174 3904 114 11 23 chr11 149743314 149743921 -1039632 + MER4A LTR ERV1 1 600 0 255 270 36 45 chr11 149743921 149743956 -1039597 - MIR SINE MIR -88 174 140 467 326 29 29 chr11 149744055 149744227 -1039326 - MIR3 SINE MIR -9 199 28 219 321 12 49 chr11 149744598 149744679 -1038874 - L2 LINE L2 -7 3265 3188 720 290 107 13 chr11 149745309 149745619 -1037934 + L2 LINE L2 2624 2962 -352 509 363 34 31 chr11 149745877 149746235 -1037318 - MLT1K LTR MaLR -218 370 12 573 243 69 23 chr11 149747276 149747449 -1036104 + MIR SINE MIR 72 252 -10 804 298 145 33 chr11 149748454 149749054 -1034499 - L2 LINE L2 0 3313 2636 187 0 121 0 chr11 149749054 149749087 -1034466 + GA-rich Low_complexity Low_complexity 1 37 0 4315 144 34 78 chr11 149749683 149750606 -1032947 - L1MB3 LINE L1 -2 6181 5300 2410 65 0 3 chr11 149751889 149752197 -1031356 + AluY SINE Alu 1 307 -4 1475 101 14 0 chr11 149753078 149753285 -1030268 + AluSg SINE Alu 1 210 -100 186 349 23 12 chr11 149754145 149754231 -1029322 + L2 LINE L2 2985 3071 -201 386 94 38 68 chr11 149755106 149755609 -1027944 + (TA)n Simple_repeat Simple_repeat 1 488 0 337 106 33 78 chr11 149755622 149755802 -1027751 + (TA)n Simple_repeat Simple_repeat 2 173 0 273 187 64 18 chr11 149755715 149755886 -1027667 + (ATATG)n Simple_repeat Simple_repeat 2 180 0 * 359 205 33 27 chr11 149755940 149756042 -1027511 + L1MC4 LINE L1 1995 6984 -1338 3511 152 17 29 chr11 149756045 149757133 -1026420 - L1P5 LINE L1 -360 5791 4725 285 191 0 0 chr11 149757135 149757203 -1026350 - L1 LINE L1 -1479 4667 4600 344 233 33 22 chr11 149757383 149757473 -1026080 + L1MCa LINE L1 1974 2064 -4362 * 347 261 62 22 chr11 149757409 149757540 -1026013 - L1MC4 LINE L1 -1339 6983 1942 271 216 46 52 chr11 149757636 149757789 -1025764 + (TA)n Simple_repeat Simple_repeat 1 152 0 2460 93 22 3 chr11 149757798 149758162 -1025391 + L1PB1 LINE L1 5781 6151 0 1565 230 70 16 chr11 149758185 149758698 -1024855 - Charlie1 DNA MER1_type -44 2717 2177 6648 70 34 0 chr11 149758698 149759877 -1023676 - L1PA7 LINE L1 -7 6147 4950 13776 95 8 32 chr11 149759977 149762033 -1021520 - HERVH LTR ERV1 -5705 2008 1 2688 99 92 5 chr11 149762035 149762447 -1021106 - LTR7 LTR ERV1 -2 448 1 278 287 70 16 chr11 149762537 149762666 -1020887 + MER3 DNA MER1_type 38 126 -83 1893 138 20 0 chr11 149762686 149762990 -1020563 - AluSx SINE Alu -2 310 1 265 338 69 18 chr11 149763525 149763727 -1019826 + MIR SINE MIR 2 206 -56 371 289 87 0 chr11 149764135 149764239 -1019314 - L2 LINE L2 -2 3311 3199 704 303 16 72 chr11 149764707 149765027 -1018526 + MLT1I LTR MaLR 57 358 -51 236 211 35 0 chr11 149765256 149765313 -1018240 - Charlie1 DNA MER1_type 0 2761 2703 382 218 0 0 chr11 149765313 149765391 -1018162 - L1 LINE L1 -1800 4346 4269 * 1239 220 8 39 chr11 149765385 149765679 -1017874 + L1 LINE L1 4320 4603 -1543 2153 105 0 10 chr11 149765679 149765985 -1017568 + AluY SINE Alu 1 303 -8 1239 220 8 39 chr11 149765985 149766049 -1017504 + L1 LINE L1 4603 4667 -1479 25434 106 15 8 chr11 149766181 149769163 -1014390 - L1P3 LINE L1 -809 5652 2604 201 74 0 0 chr11 149769163 149769190 -1014363 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 25434 106 15 8 chr11 149769190 149771072 -1012481 - L1P3 LINE L1 -3857 2604 738 4025 198 27 15 chr11 149771072 149771915 -1011638 - Charlie1a DNA MER1_type -573 882 30 245 241 19 0 chr11 149772016 149772070 -1011483 + MIR SINE MIR 87 141 -67 356 265 55 134 chr11 149772093 149772220 -1011333 - L2 LINE L2 0 3313 3178 186 71 0 0 chr11 149772220 149772248 -1011305 + (TG)n Simple_repeat Simple_repeat 2 29 0 356 265 55 134 chr11 149772248 149772486 -1011067 - L2 LINE L2 -135 3178 2977 561 279 147 10 chr11 149772597 149772801 -1010752 - MIR SINE MIR 0 262 31 28 29 0 0 chr11 149772886 149772921 -1010632 + AT_rich Low_complexity Low_complexity 1 35 0 2110 101 71 77 chr11 149774268 149774634 -1008919 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr11 149774888 149774909 -1008644 + AT_rich Low_complexity Low_complexity 1 21 0 182 150 25 0 chr11 149775847 149775887 -1007666 + (CA)n Simple_repeat Simple_repeat 2 42 0 2340 83 3 0 chr11 149776883 149777183 -1006370 - AluY SINE Alu -10 301 1 380 171 30 4 chr11 149778198 149778284 -1005269 + MLT1F1 LTR MaLR 493 567 0 996 246 160 35 chr11 149779413 149779563 -1003990 + MLT2B2 LTR ERVL 1 131 -384 2107 175 53 22 chr11 149779563 149779980 -1003573 - MSTB1 LTR MaLR 0 432 3 996 246 160 35 chr11 149779980 149780245 -1003308 + MLT2B2 LTR ERVL 131 479 -36 432 0 0 0 chr11 149780245 149780293 -1003260 + (CA)n Simple_repeat Simple_repeat 2 49 0 996 246 160 35 chr11 149780293 149780327 -1003226 + MLT2B2 LTR ERVL 479 507 -8 199 336 38 38 chr11 149782103 149782234 -1001319 + L2 LINE L2 1872 2002 -1312 2301 279 61 17 chr11 149782245 149783049 -1000504 - L1ME3A LINE L1 -4 6166 5328 2432 271 80 46 chr11 149783128 149784525 -999028 - L1ME3A LINE L1 -807 5339 3895 2388 87 0 7 chr11 149786947 149787256 -996297 - AluY SINE Alu -4 307 1 26 82 0 0 chr11 149787266 149787327 -996226 + AT_rich Low_complexity Low_complexity 1 61 0 258 284 57 0 chr11 149787984 149788072 -995481 - MER5A DNA MER1_type -87 102 10 1040 211 51 13 chr11 149789291 149789528 -994025 - MIR SINE MIR -2 260 15 232 229 0 33 chr11 149791168 149791229 -992324 - MLT1J LTR MaLR -204 307 249 297 291 91 18 chr11 149791474 149791584 -991969 + MIR SINE MIR 66 183 -79 685 270 68 32 chr11 149791821 149792069 -991484 + MIR SINE MIR 1 257 -5 2056 110 6 44 chr11 149792842 149793160 -990393 - AluSx SINE Alu -6 306 1 1153 67 0 0 chr11 149793160 149793295 -990258 - AluSq/x SINE Alu -178 135 1 420 251 183 16 chr11 149794025 149794216 -989337 + MIR SINE MIR 24 246 -16 314 269 67 0 chr11 149794736 149794840 -988713 + MIR SINE MIR 79 189 -73 547 282 49 45 chr11 149796102 149796347 -987206 - MIR SINE MIR -4 258 13 612 276 12 0 chr11 149796550 149796713 -986840 - MER5A DNA MER1_type -21 168 4 336 345 0 0 chr11 149798392 149798479 -985074 + L2 LINE L2 3186 3272 0 262 132 52 0 chr11 149798542 149798592 -984961 + MIR SINE MIR 111 171 -37 332 257 150 18 chr11 149799627 149799740 -983813 + MIR3 SINE MIR 3 130 -78 1896 197 70 8 chr11 149800017 149800388 -983165 + MSTD LTR MaLR 1 394 -2 381 296 45 30 chr11 149800397 149800529 -983024 - MIR SINE MIR -121 141 8 262 313 62 49 chr11 149800901 149801045 -982508 - MIR SINE MIR -6 256 111 204 273 70 84 chr11 149801152 149801295 -982258 + L2 LINE L2 2933 3073 -199 317 271 12 12 chr11 149801402 149801487 -982066 + MER3 DNA MER1_type 3 87 -122 258 288 162 0 chr11 149802937 149803048 -980505 + MIR3 SINE MIR 32 160 -48 264 111 0 22 chr11 149803228 149803273 -980280 + MIR3 SINE MIR 151 194 -14 401 235 48 76 chr11 149803886 149804032 -979521 - L1ME2 LINE L1 0 6334 6031 386 243 36 0 chr11 149804107 149804218 -979335 + L1ME2 LINE L1 6031 6145 -19 205 372 18 18 chr11 149804219 149804332 -979221 - MIR SINE MIR -148 114 2 185 436 103 0 chr11 149804387 149804504 -979049 - MIR3 SINE MIR -49 159 31 393 22 0 0 chr11 149804820 149804866 -978687 + (CA)n Simple_repeat Simple_repeat 2 47 0 2175 119 7 0 chr11 149805741 149806034 -977519 - AluSx SINE Alu -17 295 1 502 339 54 12 chr11 149806756 149806998 -976555 + MIR SINE MIR 11 262 0 369 343 95 51 chr11 149808146 149808461 -975092 - L2 LINE L2 -1 3271 2943 36047 80 9 7 chr11 149810725 149816408 -967145 + L1PA6 LINE L1 459 6154 0 465 258 53 8 chr11 149816569 149816701 -966852 - MIR SINE MIR -120 142 5 227 209 44 88 chr11 149817604 149817695 -965858 + MLT1D LTR MaLR 375 461 -44 22 0 0 0 chr11 149818074 149818096 -965457 + AT_rich Low_complexity Low_complexity 1 22 0 284 333 66 74 chr11 149818172 149818538 -965015 - L2 LINE L2 0 3272 2910 267 349 87 32 chr11 149818634 149818946 -964607 - L2 LINE L2 -479 2835 2507 599 284 186 21 chr11 149818969 149819750 -963803 + L2 LINE L2 2402 3313 0 306 0 0 0 chr11 149820731 149820765 -962788 + (TG)n Simple_repeat Simple_repeat 1 34 0 1122 215 44 62 chr11 149820853 149821240 -962313 + MER39 LTR ERV1 67 638 -69 209 241 17 0 chr11 149821280 149821338 -962215 + (TA)n Simple_repeat Simple_repeat 2 60 0 349 293 77 1 chr11 149821382 149821536 -962017 + MIR SINE MIR 22 184 -62 623 296 85 41 chr11 149822634 149822999 -960554 + L2 LINE L2 2927 3307 -6 754 261 29 33 chr11 149823004 149823245 -960308 + MIR SINE MIR 13 252 -10 225 277 0 0 chr11 149823321 149823386 -960167 + MIR SINE MIR 198 262 0 194 103 0 26 chr11 149823422 149823461 -960092 + (TTA)n Simple_repeat Simple_repeat 1 38 0 1579 238 3 12 chr11 149824197 149824517 -959036 + L1M2 LINE L1 792 1108 -5741 5190 158 25 14 chr11 149826666 149827570 -955983 + MER49 LTR ERV1 1 914 -9 1972 128 0 4 chr11 149828497 149828770 -954783 + AluSx SINE Alu 1 272 -40 258 258 92 17 chr11 149829326 149829446 -954107 + LTR16A1 LTR ERVL 280 408 -49 356 293 157 56 chr11 149831251 149831538 -952015 - MER102b DNA MER1_type -25 316 1 210 118 0 0 chr11 149831925 149831959 -951594 + (A)n Simple_repeat Simple_repeat 1 34 0 202 244 12 61 chr11 149831998 149832080 -951473 + L2 LINE L2 2706 2783 -531 718 261 76 4 chr11 149832191 149832440 -951113 + L2 LINE L2 2393 2659 -655 900 274 121 24 chr11 149832440 149832813 -950740 - MLT1I LTR MaLR 0 409 1 736 261 81 23 chr11 149832813 149833172 -950381 + L2 LINE L2 2656 3033 -280 223 274 0 32 chr11 149833446 149833508 -950045 - L3 LINE CR1 -1 1576 1517 217 104 0 42 chr11 149833540 149833588 -949965 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 580 190 9 0 chr11 149833644 149833760 -949793 - MER103 DNA DNA -48 118 2 2389 132 13 21 chr11 149833936 149834314 -949239 - THE1C LTR MaLR 0 375 1 209 297 0 55 chr11 149835210 149835301 -948252 - MIR SINE MIR -65 197 112 1762 127 22 14 chr11 149835325 149835601 -947952 + AluSx SINE Alu 33 310 -2 222 118 0 0 chr11 149835779 149835813 -947740 + (A)n Simple_repeat Simple_repeat 1 34 0 249 294 63 16 chr11 149836246 149836372 -947181 - L1ME4a LINE L1 -3 6118 5987 191 0 0 93 chr11 149836729 149836772 -946781 + (TAA)n Simple_repeat Simple_repeat 3 41 0 216 67 0 0 chr11 149836942 149836972 -946581 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 229 276 26 0 chr11 149836976 149837052 -946501 + L2 LINE L2 3179 3256 -57 303 122 0 0 chr11 149837084 149837133 -946420 + (TGAA)n Simple_repeat Simple_repeat 3 51 0 295 336 80 18 chr11 149839034 149839147 -944406 - L2 LINE L2 -17 3255 3136 457 283 26 57 chr11 149839263 149839639 -943914 + MLT1I LTR MaLR 63 391 -18 413 316 117 40 chr11 149839914 149840547 -943006 - L2 LINE L2 -419 2895 2214 522 259 82 78 chr11 149840833 149841127 -942426 + L2 LINE L2 3005 3299 -14 222 37 0 0 chr11 149841128 149841155 -942398 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 323 312 190 20 chr11 149841158 149841552 -942001 - L2 LINE L2 -1898 1416 956 311 238 69 10 chr11 149841756 149841857 -941696 + MIR SINE MIR 47 153 -109 21 36 0 0 chr11 149841988 149842016 -941537 + GC_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr11 149842035 149842058 -941495 + (A)n Simple_repeat Simple_repeat 1 23 0 192 298 84 11 chr11 149842173 149842351 -941202 + L2 LINE L2 2816 3006 -266 461 238 53 13 chr11 149844652 149844803 -938750 - MLT1J LTR MaLR -354 157 1 2908 258 88 28 chr11 149845135 149846541 -937012 - L1MEc LINE L1 -3873 2523 1033 272 242 16 0 chr11 149846544 149846606 -936947 - MER58 DNA MER1_type 0 2420 2358 344 353 143 10 chr11 149846606 149846906 -936647 - L1MEc LINE L1 -6025 371 32 1984 154 6 10 chr11 149847898 149848209 -935344 - AluJb SINE Alu -2 310 1 370 241 179 53 chr11 149848486 149848693 -934860 + MER5C DNA MER1_type 2 234 -90 521 130 22 0 chr11 149848696 149848788 -934765 + CT-rich Low_complexity Low_complexity 3 96 0 240 255 10 71 chr11 149848818 149848916 -934637 + L1MD1 LINE L1 6139 6230 -12 232 119 0 0 chr11 149848950 149848992 -934561 + MER5C DNA MER1_type 280 321 -3 757 260 136 0 chr11 149849218 149849453 -934100 - MLT1H LTR MaLR -123 426 160 321 181 32 0 chr11 149852423 149852517 -931036 + CT-rich Low_complexity Low_complexity 5 101 0 2102 100 36 7 chr11 149852561 149852840 -930713 - AluSx SINE Alu -25 287 1 472 342 0 5 chr11 149853236 149853420 -930133 - MER5A DNA MER1_type 0 189 7 206 308 0 0 chr11 149853498 149853550 -930003 - L2 LINE L2 -14 3258 3207 306 0 0 0 chr11 149854364 149854398 -929155 + (TG)n Simple_repeat Simple_repeat 1 34 0 180 0 0 0 chr11 149855594 149855614 -927939 + (A)n Simple_repeat Simple_repeat 1 20 0 239 241 12 0 chr11 149855912 149855995 -927558 + (TG)n Simple_repeat Simple_repeat 1 84 0 365 277 94 50 chr11 149856469 149856671 -926882 - MIR SINE MIR -37 225 15 352 262 49 0 chr11 149857063 149857185 -926368 + MIR SINE MIR 135 262 0 2440 84 3 3 chr11 149857405 149857714 -925839 + AluSc SINE Alu 1 309 0 24 0 0 0 chr11 149857883 149857907 -925646 + GC_rich Low_complexity Low_complexity 1 24 0 306 106 0 0 chr11 149857926 149857973 -925580 + (A)n Simple_repeat Simple_repeat 1 47 0 24 0 0 0 chr11 149858585 149858609 -924944 + AT_rich Low_complexity Low_complexity 1 24 0 212 212 274 75 chr11 149858671 149858817 -924736 + MER5B DNA MER1_type 1 175 -3 2360 137 17 3 chr11 149859888 149860245 -923308 + THE1B LTR MaLR 1 362 -2 440 310 52 61 chr11 149860248 149860477 -923076 + MIR SINE MIR 26 252 -10 22 56 0 0 chr11 149861631 149861667 -921886 + AT_rich Low_complexity Low_complexity 1 36 0 211 331 108 29 chr11 149862022 149862161 -921392 - L2 LINE L2 0 3272 3123 21 36 0 0 chr11 149864798 149864826 -918727 + AT_rich Low_complexity Low_complexity 1 28 0 422 248 50 50 chr11 149865176 149865337 -918216 + MIR SINE MIR 28 188 -74 264 257 0 14 chr11 149865327 149865397 -918156 + L2 LINE L2 3193 3261 -52 * 355 337 71 0 chr11 149866067 149866227 -917326 + MIR SINE MIR 45 213 -49 275 246 15 0 chr11 149867326 149867391 -916162 + CT-rich Low_complexity Low_complexity 3 68 0 425 230 10 165 chr11 149867625 149867916 -915637 + MER112 DNA MER1_type 5 250 -10 1860 179 25 22 chr11 149869615 149869973 -913580 - MLT1A1 LTR MaLR -6 359 1 240 188 0 0 chr11 149872356 149872420 -911133 + GA-rich Low_complexity Low_complexity 1 64 0 2430 91 28 22 chr11 149874577 149874973 -908580 - LTR7 LTR ERV1 -8 442 1 2350 111 50 13 chr11 149874973 149875351 -908202 - HERVH LTR ERV1 0 7713 7322 1390 136 18 5 chr11 149875349 149875569 -907984 - HERVH LTR ERV1 -1894 5819 5597 * 4595 131 0 3 chr11 149875559 149876229 -907324 - HERVH LTR ERV1 -2558 5155 4488 3395 113 4 8 chr11 149876231 149876735 -906818 - HERVH LTR ERV1 -3720 3993 3492 866 136 27 0 chr11 149876725 149876872 -906681 - HERVH LTR ERV1 -4423 3290 3140 * 14266 101 7 14 chr11 149876866 149878928 -904625 - HERVH LTR ERV1 -4726 2987 940 200 306 108 25 chr11 149879124 149879281 -904272 - MIR SINE MIR -3 259 90 232 172 16 16 chr11 149879382 149879446 -904107 + CT-rich Low_complexity Low_complexity 1 64 0 349 198 22 0 chr11 149879481 149879572 -903981 + CT-rich Low_complexity Low_complexity 3 95 0 180 280 30 60 chr11 149879987 149880087 -903466 - MIR SINE MIR -93 169 73 2045 122 3 7 chr11 149880573 149880877 -902676 - AluSx SINE Alu -9 303 1 204 40 0 0 chr11 149882008 149882033 -901520 + (T)n Simple_repeat Simple_repeat 1 25 0 708 296 147 46 chr11 149932103 149933109 -850444 + L2 LINE L2 2170 3292 -21 568 204 0 9 chr11 149933374 149933482 -850071 - Tigger7 DNA MER2_type 0 2487 2381 6213 60 14 1 chr11 149933593 149934372 -849181 + L1PA6 LINE L1 5353 6141 -13 540 251 196 68 chr11 149934411 149934794 -848759 + HAL1 LINE L1 1406 1837 -670 765 221 140 47 chr11 149934844 149935027 -848526 + HAL1 LINE L1 2046 2211 -296 2571 54 0 13 chr11 149935027 149935342 -848211 + AluY SINE Alu 1 311 0 765 221 140 47 chr11 149935342 149935480 -848073 + HAL1 LINE L1 2211 2397 -110 2120 176 47 5 chr11 149935583 149935963 -847590 - MSTB LTR MaLR -15 411 16 796 205 16 22 chr11 149936273 149936458 -847095 + MER5A DNA MER1_type 4 187 -2 353 295 72 0 chr11 149936648 149936787 -846766 - MIR SINE MIR -27 235 87 234 91 0 0 chr11 149937209 149937242 -846311 + (GAAAA)n Simple_repeat Simple_repeat 1 33 0 217 211 0 0 chr11 149939247 149939285 -844268 + polypyrimidine Low_complexity Low_complexity 1 38 0 424 241 0 83 chr11 149940387 149940520 -843033 - L2 LINE L2 0 3313 3192 395 260 142 73 chr11 149941934 149942153 -841400 + HAL1 LINE L1 40 273 -2234 441 0 0 0 chr11 149942165 149942214 -841339 + (T)n Simple_repeat Simple_repeat 1 49 0 886 197 16 21 chr11 149942360 149942548 -841005 + MER5A DNA MER1_type 2 188 -1 338 241 109 40 chr11 149942588 149942762 -840791 + HAL1 LINE L1 642 827 -1680 396 268 146 46 chr11 149942773 149943034 -840519 + HAL1 LINE L1 1030 1316 -1191 38317 92 6 8 chr11 149943083 149948405 -835148 + L1P LINE L1 6 5315 -831 224 225 0 0 chr11 149948544 149948584 -834969 + polypyrimidine Low_complexity Low_complexity 4 43 0 2130 117 3 17 chr11 149949633 149949932 -833621 + AluSq SINE Alu 1 295 -18 316 247 0 26 chr11 149949953 149950030 -833523 + MIR SINE MIR 62 136 -72 250 296 0 4 chr11 149950463 149950566 -832987 - MIR SINE MIR -62 146 48 607 285 47 4 chr11 149951549 149951784 -831769 - L1ME4a LINE L1 -225 5896 5652 230 376 43 0 chr11 149951812 149951929 -831624 - MIR SINE MIR -55 153 32 249 358 147 0 chr11 149952501 149952705 -830848 - MIR SINE MIR -13 249 16 262 263 12 12 chr11 149953019 149953099 -830454 + MER116 DNA Mariner 1 80 0 353 307 31 24 chr11 149953523 149953650 -829903 + MIR SINE MIR 15 142 -120 288 0 0 0 chr11 149954065 149954097 -829456 + (CA)n Simple_repeat Simple_repeat 1 32 0 289 292 224 5 chr11 149954430 149954622 -828931 + MIR SINE MIR 15 248 -14 540 0 0 0 chr11 149954885 149954945 -828608 + (TA)n Simple_repeat Simple_repeat 2 61 0 399 332 22 9 chr11 149955938 149956170 -827383 + L3b LINE CR1 1141 1375 -208 2094 311 56 54 chr11 149956416 149957721 -825832 + L2 LINE L2 977 2283 -1031 1845 217 92 29 chr11 149957763 149958284 -825269 + HsTC2 DNA Tc2 33 586 -1312 219 69 0 0 chr11 149958631 149958660 -824893 + (CAG)n Simple_repeat Simple_repeat 1 29 0 3104 133 9 102 chr11 149958703 149959358 -824195 - L1PB4 LINE L1 0 6156 5563 275 301 52 29 chr11 149959709 149959845 -823708 - L2 LINE L2 -963 2351 2213 1273 253 108 42 chr11 149959845 149960379 -823174 + MLT1F1 LTR MaLR 1 567 0 225 0 0 0 chr11 149960488 149960513 -823040 + (A)n Simple_repeat Simple_repeat 1 25 0 221 304 87 55 chr11 149960526 149960871 -822682 - L2 LINE L2 -1218 2096 1741 756 250 60 32 chr11 149962084 149962300 -821253 + MER58A DNA MER1_type 1 222 -2 393 278 15 8 chr11 149965653 149965786 -817767 - MIR3 SINE MIR -29 179 46 268 231 132 77 chr11 149966470 149966652 -816901 - MLT1J2 LTR MaLR -152 298 107 234 370 79 0 chr11 149967000 149967127 -816426 + MER5B DNA MER1_type 1 137 -41 336 293 73 67 chr11 149971753 149971917 -811636 - MIR SINE MIR -34 174 10 1377 151 45 119 chr11 149973363 149973700 -809853 + AluJo SINE Alu 1 312 0 854 108 78 0 chr11 149973930 149974059 -809494 - MER85 DNA T2_type 0 139 1 191 387 0 0 chr11 149974253 149974328 -809225 + L2 LINE L2 2985 3059 -213 432 0 0 0 chr11 149974697 149974745 -808808 + (TG)n Simple_repeat Simple_repeat 2 49 0 359 261 155 50 chr11 149977086 149977247 -806306 + MIR3 SINE MIR 3 180 -28 232 398 0 10 chr11 149978665 149978763 -804790 - MIR3 SINE MIR -102 106 10 788 174 34 7 chr11 149978767 149978916 -804637 + MER5A DNA MER1_type 23 175 -14 899 166 16 21 chr11 149979115 149979302 -804251 + MER53 DNA DNA 2 187 -2 202 211 0 0 chr11 149979332 149979370 -804183 + T-rich Low_complexity Low_complexity 5 42 0 335 316 15 45 chr11 149980075 149980208 -803345 + MIR3 SINE MIR 40 168 -40 224 139 0 0 chr11 149981196 149981232 -802321 - MIR3 SINE MIR -2 206 171 253 273 0 0 chr11 149982198 149982253 -801300 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 279 0 0 0 chr11 149982309 149982340 -801213 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 696 293 105 17 chr11 149982511 149983034 -800519 - L2 LINE L2 -180 3133 2560 1614 224 102 26 chr11 149983219 149983688 -799865 + MLT1D LTR MaLR 1 505 0 246 277 0 31 chr11 149986107 149986172 -797381 - MIR SINE MIR 0 262 200 455 198 0 0 chr11 149986182 149986263 -797290 + MER5A DNA MER1_type 11 91 -98 467 290 72 21 chr11 149986334 149986527 -797026 - MIR SINE MIR -54 208 6 213 132 0 0 chr11 149987733 149987771 -795782 + (T)n Simple_repeat Simple_repeat 1 38 0 1747 84 4 40 chr11 149987771 149988022 -795531 - AluY SINE Alu -69 242 1 2112 124 0 6 chr11 149988022 149988335 -795218 - AluSx SINE Alu 0 312 1 1203 212 138 51 chr11 149988714 149989105 -794448 - MER110A LTR ERV1 0 468 44 653 356 119 9 chr11 149990875 149991428 -792125 + L2 LINE L2 1886 2499 -815 199 385 69 43 chr11 149991540 149991888 -791665 + L2 LINE L2 2916 3272 0 1781 133 0 63 chr11 149991908 149992224 -791329 + AluSx SINE Alu 3 298 -14 214 296 84 0 chr11 149992507 149992578 -790975 + MIR SINE MIR 117 193 -69 180 326 54 78 chr11 149993027 149993156 -790397 + L2 LINE L2 3090 3215 -57 252 188 188 0 chr11 149993201 149993265 -790288 - L2 LINE L2 0 3313 3238 238 363 20 39 chr11 149993581 149993683 -789870 - MIR SINE MIR -84 124 25 303 279 132 41 chr11 149995423 149995620 -787933 - L2 LINE L2 -85 3228 3014 1687 145 109 10 chr11 149996243 149996546 -787007 + MER44D DNA MER2_type 7 609 0 1105 176 10 0 chr11 149997981 149998185 -785368 - MER65C LTR ERV1 0 461 256 786 89 105 0 chr11 149998186 149998310 -785243 + MER85 DNA T2_type 1 137 -2 * 1563 141 11 53 chr11 149998310 149998579 -784974 - MER65C LTR ERV1 -204 257 1 478 264 226 38 chr11 149999213 149999478 -784075 - L2 LINE L2 -2 3311 2997 831 278 179 30 chr11 149999672 149999859 -783694 - L2 LINE L2 -891 2423 2265 1280 250 55 14 chr11 149999859 150000207 -783346 + MLT1A1 LTR MaLR 1 362 -3 831 278 179 30 chr11 150000207 150000512 -783041 - L2 LINE L2 -1049 2265 1858 257 287 0 83 chr11 150000757 150000865 -782688 + L2 LINE L2 3169 3267 -5 634 257 56 0 chr11 150000938 150001117 -782436 - MER5A DNA MER1_type 0 189 1 1029 293 270 25 chr11 150001654 150002588 -780965 + L3 LINE CR1 250 1412 -165 2375 83 0 3 chr11 150002703 150003015 -780538 - AluSx SINE Alu -1 311 1 217 302 139 0 chr11 150003031 150003117 -780436 + L3 LINE CR1 1441 1538 -39 1739 198 29 0 chr11 150003638 150004017 -779536 + L1MA9 LINE L1 5923 6312 0 1815 222 86 21 chr11 150004086 150004564 -778989 + L1ME1 LINE L1 5647 6155 -11 226 253 27 27 chr11 150006673 150006748 -776805 + CT-rich Low_complexity Low_complexity 1 75 0 486 281 73 18 chr11 150008443 150008607 -774946 - MIR SINE MIR -6 256 84 282 274 14 0 chr11 150009104 150009177 -774376 + (CA)n Simple_repeat Simple_repeat 1 74 0 375 232 50 0 chr11 150009771 150009870 -773683 - MER112 DNA MER1_type 0 260 157 236 156 22 0 chr11 150011439 150011484 -772069 - MIR SINE MIR -39 223 178 338 246 16 71 chr11 150011487 150011613 -771940 - MIR SINE MIR -58 204 86 229 234 160 11 chr11 150011668 150011762 -771791 + MIR SINE MIR 19 126 -82 624 289 123 13 chr11 150011781 150012016 -771537 + MIR SINE MIR 2 262 0 190 367 0 13 chr11 150012033 150012112 -771441 + MIR3 SINE MIR 124 201 -7 307 288 96 24 chr11 150013465 150013590 -769963 - L2 LINE L2 -2 3270 3137 273 135 0 0 chr11 150014623 150014675 -768878 + (TG)n Simple_repeat Simple_repeat 2 53 0 378 263 166 29 chr11 150014856 150015031 -768522 - MIR SINE MIR -52 210 12 296 288 0 0 chr11 150015193 150015273 -768280 - MIR SINE MIR 0 262 183 632 316 150 67 chr11 150015982 150017046 -766507 + L2 LINE L2 1572 2724 -590 22 35 0 0 chr11 150017443 150017472 -766081 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr11 150017661 150017681 -765872 + (GGA)n Simple_repeat Simple_repeat 2 21 0 203 125 125 0 chr11 150018073 150018113 -765440 - L2 LINE L2 -7 3306 3262 210 200 0 40 chr11 150018144 150018194 -765359 + L2 LINE L2 3265 3312 -1 294 206 0 0 chr11 150018199 150018267 -765286 + GA-rich Low_complexity Low_complexity 2 69 0 233 284 7 141 chr11 150019403 150019568 -763985 - MIR3 SINE MIR -95 113 4 192 304 87 33 chr11 150020669 150020761 -762792 + L2 LINE L2 3216 3312 -1 216 329 151 48 chr11 150021277 150021423 -762130 - L2 LINE L2 0 3272 3112 246 276 5 146 chr11 150021461 150021660 -761893 - L2 LINE L2 -278 2994 2824 1224 214 59 43 chr11 150021982 150022374 -761179 + MER96B DNA MER1_type? 20 417 0 26 0 0 0 chr11 150023969 150023995 -759558 + AT_rich Low_complexity Low_complexity 1 26 0 246 329 67 34 chr11 150025516 150025665 -757888 - MIR SINE MIR -69 193 40 194 371 0 0 chr11 150026939 150027009 -756544 - L2 LINE L2 -2 3270 3201 288 253 105 32 chr11 150027180 150027275 -756278 + MIR SINE MIR 158 259 -3 382 326 94 0 chr11 150028080 150028266 -755287 + MIR SINE MIR 58 256 -6 208 338 0 0 chr11 150028893 150028970 -754583 + CT-rich Low_complexity Low_complexity 3 79 0 322 301 75 15 chr11 150029536 150029669 -753884 - MIR SINE MIR -87 175 35 341 308 104 45 chr11 150029735 150030043 -753510 - LTR33 LTR ERVL 0 521 196 731 285 97 40 chr11 150030312 150030825 -752728 - MLT1H LTR MaLR -2 588 1 2342 158 48 7 chr11 150032016 150032428 -751125 - MSTB1 LTR MaLR 0 432 4 682 201 81 75 chr11 150032537 150032711 -750842 - MLT1G1 LTR MaLR 0 595 381 1229 297 131 6 chr11 150032795 150033270 -750283 + MER69 DNA AcHobo 41 574 -1952 1583 212 79 2 chr11 150033277 150033721 -749832 + MER69 DNA AcHobo 2029 2506 -20 666 283 62 37 chr11 150034064 150034308 -749245 - MIR SINE MIR 0 262 13 236 351 46 67 chr11 150034300 150034538 -749015 - MIR SINE MIR -2 260 22 * 1467 155 3 71 chr11 150035105 150035415 -748138 + AluJb SINE Alu 1 289 -23 383 275 65 29 chr11 150035759 150035897 -747656 - MIR SINE MIR -42 220 78 180 111 0 0 chr11 150036332 150036359 -747194 + (TTA)n Simple_repeat Simple_repeat 2 28 0 232 345 83 54 chr11 150036366 150036644 -746909 - L2 LINE L2 -2 3270 2985 398 286 18 0 chr11 150036662 150036774 -746779 + MER81 DNA DNA 1 114 0 2070 112 0 3 chr11 150039353 150039658 -743895 - AluSg SINE Alu -6 304 1 264 143 41 0 chr11 150039770 150039819 -743734 + LTR10B LTR ERV1 1 51 -496 2550 126 134 26 chr11 150039841 150040333 -743220 + LTR10A LTR ERV1 1 545 -64 502 322 164 9 chr11 150040352 150040566 -742987 + MIR SINE MIR 16 262 0 219 114 0 0 chr11 150040697 150040732 -742821 + (CA)n Simple_repeat Simple_repeat 2 36 0 299 313 112 4 chr11 150041374 150041533 -742020 + MIR SINE MIR 9 184 -63 613 306 113 20 chr11 150041571 150041924 -741629 + L2 LINE L2 2550 2935 -379 536 270 5 79 chr11 150042515 150042704 -740849 - MIR SINE MIR -10 252 78 258 32 0 0 chr11 150042709 150042740 -740813 + (TA)n Simple_repeat Simple_repeat 1 31 0 3241 39 0 10 chr11 150042740 150043130 -740423 - L1PA5 LINE L1 -4 6150 5765 232 314 7 13 chr11 150043152 150043227 -740326 - MIR SINE MIR -123 85 9 1356 270 144 52 chr11 150043296 150044012 -739541 - L2 LINE L2 -89 3224 2353 240 86 0 0 chr11 150044012 150044047 -739506 + (TG)n Simple_repeat Simple_repeat 1 35 0 1356 270 144 52 chr11 150044047 150044262 -739291 - L2 LINE L2 -960 2353 2159 1113 207 129 36 chr11 150044267 150044600 -738953 + MLT1A1 LTR MaLR 1 364 -1 350 289 32 74 chr11 150044793 150044983 -738570 + L2 LINE L2 3125 3306 -7 770 292 133 71 chr11 150045003 150045679 -737874 - L2 LINE L2 -1358 1956 1224 1601 156 57 14 chr11 150045679 150045962 -737591 - AluJb SINE Alu -13 299 5 770 292 133 71 chr11 150045962 150046070 -737483 - L2 LINE L2 -2090 1224 1124 376 278 112 12 chr11 150047228 150047397 -736156 + MIR SINE MIR 72 257 -5 419 243 10 10 chr11 150047524 150047627 -735926 + MER5A DNA MER1_type 4 106 -83 373 264 88 34 chr11 150047654 150047820 -735733 - MIR3 SINE MIR -26 182 1 423 216 29 20 chr11 150047989 150048094 -735459 + MIR3 SINE MIR 56 161 -47 6080 23 0 0 chr11 150049360 150050066 -733487 - L1PA2 LINE L1 -1138 5008 4303 7776 16 2 0 chr11 150050066 150051217 -732336 + L1PA2 LINE L1 5014 6166 0 183 314 39 39 chr11 150051868 150051970 -731583 - MIR SINE MIR -70 192 91 245 330 22 11 chr11 150052616 150052707 -730846 + MIR SINE MIR 21 112 -150 261 330 102 0 chr11 150053120 150053238 -730315 + MIR3 SINE MIR 49 178 -30 22 35 0 0 chr11 150056190 150056219 -727334 + AT_rich Low_complexity Low_complexity 1 29 0 378 347 83 20 chr11 150056294 150056538 -727015 + MIR SINE MIR 1 262 0 261 259 37 56 chr11 150056567 150056675 -726878 + MER5A DNA MER1_type 34 139 -50 21 0 0 0 chr11 150056696 150056717 -726836 + AT_rich Low_complexity Low_complexity 1 21 0 1560 153 3 44 chr11 150056725 150057047 -726506 - AluJb SINE Alu 0 310 1 1635 161 3 21 chr11 150057083 150057368 -726185 - AluJo SINE Alu -30 282 3 1957 125 24 0 chr11 150058531 150058827 -724726 - AluSq SINE Alu -10 303 1 260 324 27 45 chr11 150060244 150060355 -723198 - L2 LINE L2 -14 3299 3191 307 276 86 17 chr11 150060370 150060486 -723067 - MIR SINE MIR -66 142 19 299 291 44 70 chr11 150062354 150062581 -720972 - MIR SINE MIR 0 262 42 1275 160 22 13 chr11 150062965 150063196 -720357 - MSTB1 LTR MaLR 0 432 200 2032 125 27 0 chr11 150063198 150063495 -720058 + AluSg SINE Alu 1 305 -5 1261 36 0 24 chr11 150063640 150063806 -719747 - AluY SINE Alu 0 311 150 811 186 14 123 chr11 150063806 150064026 -719527 - MSTB1 LTR MaLR -225 201 6 509 300 78 35 chr11 150064821 150065051 -718502 + L3b LINE CR1 1126 1365 -218 571 311 40 34 chr11 150065052 150065229 -718324 + MER5B DNA MER1_type 1 178 0 1980 128 23 3 chr11 150065753 150066059 -717494 + AluSx SINE Alu 1 312 0 858 310 100 32 chr11 150066305 150066744 -716809 - MLT1H1 LTR MaLR -84 471 3 213 214 0 0 chr11 150066846 150066888 -716665 + MIR SINE MIR 123 164 -98 539 306 31 25 chr11 150066895 150067091 -716462 - LTR16A LTR ERVL -6 444 248 327 325 86 0 chr11 150067096 150067247 -716306 + MIR SINE MIR 89 252 -10 354 325 100 16 chr11 150067283 150067532 -716021 - LTR16A LTR ERVL -180 270 1 579 240 32 0 chr11 150067951 150068076 -715477 + MIR SINE MIR 48 176 -86 503 304 67 28 chr11 150068249 150068485 -715068 - MIR SINE MIR -10 252 12 193 275 22 66 chr11 150069996 150070087 -713466 + MIR3 SINE MIR 120 206 -2 1108 180 57 14 chr11 150070149 150070360 -713193 + MER46A DNA MER2_type 4 223 -13 180 343 78 39 chr11 150070481 150070583 -712970 + L2 LINE L2 3183 3288 -25 * 753 279 5 0 chr11 150070554 150070751 -712802 - MIR SINE MIR 0 262 65 221 339 0 0 chr11 150070919 150070981 -712572 + L2 LINE L2 3208 3269 -3 267 250 25 50 chr11 150071181 150071261 -712292 + L2 LINE L2 3229 3306 -7 333 300 50 10 chr11 150072388 150072488 -711065 + L2 LINE L2 3210 3313 0 233 337 56 11 chr11 150073292 150073381 -710172 - MIR SINE MIR -111 151 59 1460 172 23 60 chr11 150073381 150073683 -709870 - AluJb SINE Alu -17 295 5 273 225 28 14 chr11 150073898 150073969 -709584 - L2 LINE L2 -15 3298 3227 190 292 0 0 chr11 150074101 150074149 -709404 - L2 LINE L2 -299 2973 2926 4366 187 27 18 chr11 150074298 150075192 -708361 - L1MB4 LINE L1 -3 6177 5276 26 0 0 0 chr11 150075303 150075329 -708224 + AT_rich Low_complexity Low_complexity 1 26 0 251 175 18 0 chr11 150076592 150076649 -706904 + (CA)n Simple_repeat Simple_repeat 2 59 0 219 314 169 16 chr11 150076685 150076809 -706744 + MIR SINE MIR 110 252 -10 259 258 98 61 chr11 150077440 150077572 -705981 - L2 LINE L2 -23 3290 3154 214 333 44 67 chr11 150077963 150078098 -705455 + L2 LINE L2 3138 3269 -3 316 266 44 51 chr11 150078719 150078877 -704676 - L1MC5 LINE L1 -21 7940 7784 21 0 0 0 chr11 150079422 150079443 -704110 + AT_rich Low_complexity Low_complexity 1 21 0 509 292 40 6 chr11 150080462 150080649 -702904 - MIR3 SINE MIR -4 204 6 189 204 68 0 chr11 150080925 150080969 -702584 + L2 LINE L2 3217 3263 -9 1051 113 65 16 chr11 150080977 150081163 -702390 + L1MA7 LINE L1 6003 6197 -94 1697 166 0 29 chr11 150081163 150081471 -702082 - AluJb SINE Alu -1 311 13 283 294 28 28 chr11 150081835 150081944 -701609 - L2 LINE L2 -286 3027 2919 444 231 19 19 chr11 150082136 150082240 -701313 - MER81 DNA DNA -10 104 1 2011 140 0 7 chr11 150082397 150082705 -700848 - AluSg SINE Alu -4 306 1 193 322 33 11 chr11 150083988 150084078 -699475 + MIR SINE MIR 154 245 -17 184 294 103 0 chr11 150084435 150084503 -699050 - L2 LINE L2 -192 3080 3006 23 54 0 0 chr11 150086444 150086481 -697072 + AT_rich Low_complexity Low_complexity 1 37 0 258 248 0 78 chr11 150087508 150087649 -695904 + T-rich Low_complexity Low_complexity 2 131 0 367 299 94 70 chr11 150087753 150088051 -695502 - L2 LINE L2 -3 3269 2965 3261 192 37 16 chr11 150089273 150089975 -693578 - LTR62 LTR ERVK -2 717 1 501 311 71 18 chr11 150090220 150090445 -693108 + MIR SINE MIR 20 256 -6 25 0 0 0 chr11 150090615 150090640 -692913 + AT_rich Low_complexity Low_complexity 1 25 0 186 43 0 0 chr11 150091268 150091291 -692262 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 51 31 0 0 chr11 150091609 150091674 -691879 + AT_rich Low_complexity Low_complexity 1 65 0 288 183 70 70 chr11 150092384 150092455 -691098 - MIR SINE MIR -17 245 175 1297 172 4 37 chr11 150092458 150092573 -690980 + AluJo SINE Alu 54 171 -141 2078 158 119 8 chr11 150092573 150092958 -690595 + MSTA LTR MaLR 1 428 0 1297 172 4 37 chr11 150092958 150093086 -690467 + AluJo SINE Alu 171 289 -23 22 0 0 0 chr11 150093239 150093261 -690292 + AT_rich Low_complexity Low_complexity 1 22 0 624 214 0 0 chr11 150093268 150093394 -690159 - FLAM_A SINE Alu 0 142 17 232 333 73 32 chr11 150093702 150093825 -689728 - MER103 DNA DNA -35 131 4 251 341 0 11 chr11 150094358 150094446 -689107 + GA-rich Low_complexity Low_complexity 2 88 0 472 335 32 12 chr11 150094450 150094698 -688855 + L1ME3A LINE L1 5476 5728 -442 491 0 0 16 chr11 150094701 150094763 -688790 + AluY SINE Alu 239 299 -12 2275 67 3 10 chr11 150094774 150095072 -688481 + AluY SINE Alu 1 296 -15 767 237 37 133 chr11 150095072 150095553 -688000 + L1ME3A LINE L1 5717 6151 -19 187 378 81 61 chr11 150095686 150096144 -687409 + L2 LINE L2 2380 2846 -468 252 322 66 110 chr11 150096173 150096536 -687017 + L2 LINE L2 2925 3271 -1 189 0 0 0 chr11 150096760 150096781 -686772 + (CA)n Simple_repeat Simple_repeat 2 22 0 857 230 0 0 chr11 150097256 150097421 -686132 + FRAM SINE Alu 1 165 -1 548 278 8 0 chr11 150098669 150098802 -684751 + MIR SINE MIR 37 170 -92 2150 119 0 0 chr11 150098804 150099106 -684447 - AluSg SINE Alu -8 302 1 213 132 0 0 chr11 150099227 150099265 -684288 + (TG)n Simple_repeat Simple_repeat 2 39 0 211 298 36 24 chr11 150099590 150099674 -683879 + MIR3 SINE MIR 88 172 -36 292 219 47 0 chr11 150101883 150101947 -681606 - MLT1J LTR MaLR -41 470 404 528 233 197 16 chr11 150101983 150102216 -681337 - MLT1J LTR MaLR -210 301 1 230 260 90 40 chr11 150104041 150104141 -679412 + MIR SINE MIR 103 207 -55 262 331 31 31 chr11 150105264 150105424 -678129 + MIR SINE MIR 58 217 -45 21 0 0 0 chr11 150105452 150105473 -678080 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr11 150105816 150105839 -677714 + (T)n Simple_repeat Simple_repeat 1 23 0 673 243 14 7 chr11 150106570 150106718 -676835 - MLT1A2 LTR MaLR -50 324 176 222 118 0 0 chr11 150106723 150106757 -676796 + (GA)n Simple_repeat Simple_repeat 2 35 0 876 166 4 113 chr11 150106803 150107032 -676521 - L1MA10 LINE L1 -10 6324 6121 291 177 0 0 chr11 150107103 150107165 -676388 + (CA)n Simple_repeat Simple_repeat 2 63 0 198 232 18 18 chr11 150107852 150107908 -675645 + L2 LINE L2 3258 3313 0 303 179 0 0 chr11 150108685 150108752 -674801 + (TG)n Simple_repeat Simple_repeat 1 67 0 1846 132 14 3 chr11 150109489 150109776 -673777 + AluSx SINE Alu 1 290 -22 229 244 0 0 chr11 150110192 150110237 -673316 + L2 LINE L2 3269 3313 0 267 292 83 0 chr11 150110317 150110413 -673140 - MIR SINE MIR -40 222 119 227 354 110 0 chr11 150110493 150110620 -672933 - MIR SINE MIR 0 262 122 340 330 41 0 chr11 150110650 150110747 -672806 - MIR SINE MIR -114 148 48 866 194 18 116 chr11 150111177 150111409 -672144 - L1MB8 LINE L1 0 6178 5977 2181 104 0 16 chr11 150111409 150111727 -671826 - AluSq SINE Alu 0 313 1 866 194 18 116 chr11 150111727 150111778 -671775 - L1MB8 LINE L1 -201 5977 5923 1562 192 6 16 chr11 150111849 150112162 -671391 - AluJo SINE Alu -2 310 1 342 305 104 18 chr11 150112416 150112580 -670973 - MER5A DNA MER1_type -5 184 7 2002 122 0 10 chr11 150112824 150113136 -670417 + AluSc SINE Alu 1 309 0 577 239 128 9 chr11 150113250 150113435 -670118 + MIR SINE MIR 2 183 -62 446 281 99 12 chr11 150113599 150113770 -669783 - MIR SINE MIR -36 226 41 337 311 25 17 chr11 150116638 150116757 -666796 - MIR SINE MIR -74 188 69 288 91 0 0 chr11 150116825 150116869 -666684 + (TG)n Simple_repeat Simple_repeat 2 45 0 204 356 14 0 chr11 150117250 150117323 -666230 - L3 LINE CR1 -15 1562 1489 430 216 36 9 chr11 150117406 150117517 -666036 - MER103 DNA DNA -17 149 36 924 162 0 0 chr11 150120149 150120297 -663256 - AluJb SINE Alu -13 299 152 1053 212 71 48 chr11 150120315 150120769 -662784 + MLT1F1 LTR MaLR 56 567 0 526 311 6 6 chr11 150121084 150121245 -662308 - MIR SINE MIR -21 241 81 1843 106 4 0 chr11 150121245 150121501 -662052 + AluY SINE Alu 37 293 -18 25 0 0 0 chr11 150121659 150121684 -661869 + AT_rich Low_complexity Low_complexity 1 25 0 771 245 51 10 chr11 150122023 150122219 -661334 - MIR SINE MIR 0 262 59 581 220 87 58 chr11 150122252 150122425 -661128 - MLT1F1 LTR MaLR -263 304 127 718 256 108 0 chr11 150123327 150123550 -660003 + MIR SINE MIR 6 252 -10 652 276 79 14 chr11 150123603 150123817 -659736 + MIR SINE MIR 25 252 -10 21 0 0 0 chr11 150124148 150124169 -659384 + AT_rich Low_complexity Low_complexity 1 21 0 1370 319 73 12 chr11 150124369 150124873 -658680 + L3 LINE CR1 332 866 -711 621 293 29 11 chr11 150125156 150125330 -658223 + MIR SINE MIR 8 184 -78 195 42 0 0 chr11 150125844 150125868 -657685 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 190 260 135 58 chr11 150126172 150126276 -657277 + L3 LINE CR1 1249 1360 -217 950 191 76 20 chr11 150127959 150128353 -655200 - LTR54 LTR ERV1 -1 509 1 181 389 56 0 chr11 150128907 150129033 -654520 + MIR SINE MIR 114 246 -16 234 313 60 27 chr11 150129913 150130063 -653490 - MIR SINE MIR -44 218 64 315 0 0 0 chr11 150130903 150130938 -652615 + (TG)n Simple_repeat Simple_repeat 2 36 0 431 314 48 27 chr11 150130944 150131132 -652421 + MIR3 SINE MIR 10 201 -7 456 268 96 52 chr11 150132356 150132606 -650947 - MIR SINE MIR -1 261 1 301 303 146 17 chr11 150133565 150133743 -649810 - L3b LINE CR1 -207 1376 1176 424 230 80 9 chr11 150133962 150134075 -649478 + MIR SINE MIR 23 143 -65 189 323 16 0 chr11 150134109 150134171 -649382 + L2 LINE L2 3204 3266 -6 353 70 18 0 chr11 150134359 150134416 -649137 + (CA)n Simple_repeat Simple_repeat 2 59 0 510 292 92 27 chr11 150135264 150135449 -648104 - MIR SINE MIR -37 225 29 291 299 96 28 chr11 150135525 150135702 -647851 + L2 LINE L2 3125 3313 0 1378 185 17 34 chr11 150136134 150136426 -647127 - AluJb SINE Alu -22 290 4 463 341 23 0 chr11 150136618 150136791 -646762 + MIR SINE MIR 54 230 -32 803 241 77 0 chr11 150138023 150138230 -645323 - MER58A DNA MER1_type -1 223 1 3483 64 16 0 chr11 150138500 150138937 -644616 - MLT2A1 LTR ERVL 0 444 1 280 303 0 0 chr11 150139012 150139101 -644452 + CT-rich Low_complexity Low_complexity 1 89 0 1990 99 3 7 chr11 150140412 150140822 -642731 - AluSx SINE Alu 0 409 1 513 333 83 19 chr11 150141239 150141503 -642050 - L2 LINE L2 0 3272 2992 303 280 106 23 chr11 150142924 150143056 -640497 + MIR3 SINE MIR 2 144 -64 267 223 41 132 chr11 150143476 150143597 -639956 - L2 LINE L2 0 3272 3163 1464 305 124 14 chr11 150144243 150144963 -638590 + L2 LINE L2 2164 2964 -350 456 245 141 21 chr11 150144963 150145122 -638431 - MER5A DNA MER1_type 0 189 5 2235 218 8 13 chr11 150145186 150145713 -637840 - L1MB8 LINE L1 -9 6169 5646 23 0 0 0 chr11 150149015 150149038 -634515 + AT_rich Low_complexity Low_complexity 1 23 0 3949 226 33 17 chr11 150149104 150150116 -633437 - L1MB8 LINE L1 -1173 4973 3946 331 223 8 146 chr11 150150362 150150409 -633144 + L2 LINE L2 3161 3213 -59 1292 179 22 60 chr11 150150409 150150727 -632826 - AluJb SINE Alu -6 306 1 331 223 8 146 chr11 150150727 150150809 -632744 + L2 LINE L2 3213 3272 0 2130 105 7 0 chr11 150152570 150152866 -630687 + AluSc SINE Alu 1 298 -11 193 258 0 81 chr11 150153214 150153276 -630277 - MIR3 SINE MIR -28 180 124 354 292 28 56 chr11 150153781 150153925 -629628 - MER5B DNA MER1_type -30 148 9 24 0 0 0 chr11 150154586 150154610 -628943 + AT_rich Low_complexity Low_complexity 1 24 0 2418 71 0 0 chr11 150154610 150154920 -628633 - AluSg SINE Alu 0 310 1 847 254 19 9 chr11 150155469 150155693 -627860 + MIR SINE MIR 34 262 0 254 307 0 97 chr11 150155764 150155878 -627675 - MIR SINE MIR -66 142 40 1094 248 64 7 chr11 150156119 150156566 -626987 - L2 LINE L2 -277 3036 2555 1986 122 31 0 chr11 150156728 150157016 -626537 + AluSg SINE Alu 2 298 -12 272 346 96 7 chr11 150158502 150158638 -624915 + L3b LINE CR1 1422 1569 -14 239 162 0 0 chr11 150159358 150159395 -624158 + L2 LINE L2 3266 3302 -11 306 0 0 0 chr11 150160017 150160051 -623502 + (CA)n Simple_repeat Simple_repeat 2 35 0 1918 130 0 13 chr11 150161160 150161459 -622094 + AluSq SINE Alu 1 295 -18 319 323 85 15 chr11 150161474 150161675 -621878 - MIR SINE MIR -20 242 28 247 313 61 7 chr11 150163065 150163212 -620341 + MIR SINE MIR 73 227 -35 1446 262 133 8 chr11 150164470 150164951 -618602 - MLT1F LTR MaLR -1 541 1 344 284 0 0 chr11 150168094 150168182 -615371 + GA-rich Low_complexity Low_complexity 2 89 0 3386 37 17 0 chr11 150168542 150168944 -614609 + L1PA5 LINE L1 5738 6146 -8 215 304 58 0 chr11 150169003 150169072 -614481 - L2 LINE L2 -51 3221 3149 228 35 0 0 chr11 150170157 150170186 -613367 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 552 274 77 0 chr11 150170422 150170590 -612963 - MIR SINE MIR -17 245 65 820 272 15 0 chr11 150171488 150171683 -611870 + MER58A DNA MER1_type 3 200 -24 274 395 46 7 chr11 150172922 150173074 -610479 - MIR SINE MIR -56 206 49 4455 130 29 11 chr11 150173210 150173934 -609619 - L1PA13 LINE L1 -1 6162 5426 269 300 49 31 chr11 150175390 150175548 -608005 - MIR3 SINE MIR -32 176 21 204 40 0 0 chr11 150175987 150176012 -607541 + (CAT)n Simple_repeat Simple_repeat 1 25 0 284 312 43 74 chr11 150176972 150177189 -606364 + MIR SINE MIR 6 225 -32 391 264 32 58 chr11 150179413 150179464 -604089 + MER5A DNA MER1_type 1 52 -137 2434 169 27 0 chr11 150179464 150179873 -603680 + MSTB LTR MaLR 3 422 -4 391 264 32 58 chr11 150179873 150179976 -603577 + MER5A DNA MER1_type 52 151 -38 606 311 6 0 chr11 150180012 150180189 -603364 - MER5B DNA MER1_type 0 178 1 251 270 135 0 chr11 150182658 150182747 -600806 + MER46C DNA MER2_type 2 102 -236 745 180 48 6 chr11 150183260 150183427 -600126 - L1MC1 LINE L1 -7 6326 6153 2085 101 17 7 chr11 150183625 150183921 -599632 + AluSx SINE Alu 1 299 -13 262 320 22 67 chr11 150185720 150185898 -597655 + MIR SINE MIR 69 238 -24 229 381 85 8 chr11 150186219 150186337 -597216 - L2 LINE L2 0 3272 3146 228 130 0 0 chr11 150186896 150186942 -596611 + (CAGAGA)n Simple_repeat Simple_repeat 1 46 0 1242 270 51 20 chr11 150187008 150187497 -596056 - L1ME3A LINE L1 -21 6149 5646 32 26 0 0 chr11 150187500 150187539 -596014 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr11 150188635 150188656 -594897 + AT_rich Low_complexity Low_complexity 1 21 0 1815 164 7 3 chr11 150188970 150189257 -594296 + AluJo SINE Alu 1 288 -24 191 301 161 21 chr11 150189693 150189836 -593717 + MIR SINE MIR 98 260 -2 663 278 124 28 chr11 150191217 150191658 -591895 - MLT1J LTR MaLR 0 511 4 338 303 197 5 chr11 150192487 150192695 -590858 + MIR SINE MIR 3 250 -12 468 232 195 12 chr11 150192872 150193118 -590435 - HAL1b LINE L1 -355 993 703 714 283 54 52 chr11 150193176 150193656 -589897 - HAL1b LINE L1 -778 570 90 2585 41 3 0 chr11 150194094 150194388 -589165 - AluY SINE Alu -11 300 6 316 361 43 57 chr11 150195536 150195766 -587787 + MIR SINE MIR 20 246 -16 886 215 0 0 chr11 150195864 150196036 -587517 + Tigger3(Golem) DNA MER2_type 2 173 -2856 4447 135 50 51 chr11 150196078 150196979 -586574 + Tigger3(Golem) DNA MER2_type 2121 3020 -9 552 296 11 0 chr11 150197197 150197373 -586180 + MER8 DNA MER2_type 2 179 -60 239 267 17 0 chr11 150197351 150197411 -586142 + MER2 DNA MER2_type 285 345 0 * 333 292 54 15 chr11 150197549 150197679 -585874 + MIR SINE MIR 20 154 -108 21 71 0 0 chr11 150199107 150199149 -584404 + AT_rich Low_complexity Low_complexity 1 42 0 2156 110 10 3 chr11 150199168 150199460 -584093 + AluSx SINE Alu 1 294 -18 407 335 64 39 chr11 150201073 150201306 -582247 - MIR SINE MIR -14 248 10 336 320 20 0 chr11 150201464 150201564 -581989 + MIR SINE MIR 21 122 -86 26 30 0 0 chr11 150202078 150202111 -581442 + AT_rich Low_complexity Low_complexity 1 33 0 1759 175 115 0 chr11 150202682 150203030 -580523 + MLT1B LTR MaLR 1 388 -2 293 272 136 0 chr11 150203119 150203244 -580309 + MIR SINE MIR 55 196 -66 225 317 75 43 chr11 150204580 150204766 -578787 + L2 LINE L2 2915 3106 -166 310 301 141 6 chr11 150205034 150205190 -578363 - MER5B DNA MER1_type -1 177 1 349 351 58 6 chr11 150205315 150205489 -578064 - MIR SINE MIR -75 187 5 387 0 0 0 chr11 150205564 150205607 -577946 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 189 0 0 0 chr11 150206497 150206518 -577035 + (GA)n Simple_repeat Simple_repeat 2 22 0 332 316 230 5 chr11 150206586 150206782 -576771 + MIR SINE MIR 11 250 -12 504 93 31 21 chr11 150207630 150207727 -575826 + CT-rich Low_complexity Low_complexity 3 100 0 463 317 99 23 chr11 150212770 150212991 -570562 - MIR SINE MIR -5 257 20 556 320 86 0 chr11 150213520 150213742 -569811 + L3 LINE CR1 1215 1455 -122 216 224 0 0 chr11 150213742 150213809 -569744 + (TG)n Simple_repeat Simple_repeat 1 67 0 321 262 39 0 chr11 150214230 150214333 -569220 - L1MC4 LINE L1 -394 7648 7542 186 312 111 21 chr11 150214500 150214719 -568834 + MIR SINE MIR 17 262 0 345 325 141 0 chr11 150214934 150215097 -568456 - MIR SINE MIR -15 247 62 306 273 0 71 chr11 150216736 150216835 -566718 + MER117 DNA MER1_type 65 156 -41 628 247 26 7 chr11 150217012 150217166 -566387 + MER5A DNA MER1_type 33 189 0 336 249 0 0 chr11 150217664 150218157 -565396 + (TG)n Simple_repeat Simple_repeat 1 493 0 366 240 0 0 chr11 150218168 150218558 -564995 + (TG)n Simple_repeat Simple_repeat 1 390 0 463 226 0 27 chr11 150218590 150219112 -564441 + (TG)n Simple_repeat Simple_repeat 1 508 0 407 226 0 11 chr11 150219176 150219357 -564196 + (TG)n Simple_repeat Simple_repeat 2 180 0 276 264 0 0 chr11 150219372 150219546 -564007 + (TG)n Simple_repeat Simple_repeat 1 174 0 579 220 1 8 chr11 150219578 150221220 -562333 + (TG)n Simple_repeat Simple_repeat 1 1630 0 596 180 0 6 chr11 150221269 150221441 -562112 + (TG)n Simple_repeat Simple_repeat 2 172 0 217 206 143 16 chr11 150221767 150221830 -561723 + MIR SINE MIR 117 187 -75 306 223 67 109 chr11 150223508 150223694 -559859 + MIR SINE MIR 31 214 -48 899 261 131 50 chr11 150224947 150225391 -558162 + L2 LINE L2 2829 3308 -5 1530 188 8 0 chr11 150225699 150225965 -557588 - Tigger2 DNA MER2_type 0 2718 2451 561 320 86 0 chr11 150228760 150228982 -554571 + L3 LINE CR1 1215 1455 -122 216 224 0 0 chr11 150228982 150229049 -554504 + (TG)n Simple_repeat Simple_repeat 1 67 0 341 255 39 0 chr11 150229468 150229570 -553983 - L1MC4 LINE L1 -394 7648 7543 345 319 141 0 chr11 150230168 150230331 -553222 - MIR SINE MIR -15 247 62 325 273 0 71 chr11 150231969 150232068 -551485 + MER117 DNA MER1_type 65 156 -41 577 255 33 7 chr11 150232244 150232397 -551156 + MER5A DNA MER1_type 33 189 0 370 235 0 8 chr11 150232895 150233143 -550410 + (TG)n Simple_repeat Simple_repeat 1 245 0 258 258 0 0 chr11 150233154 150233313 -550240 + (TG)n Simple_repeat Simple_repeat 1 159 0 440 208 0 22 chr11 150233339 150233522 -550031 + (TG)n Simple_repeat Simple_repeat 2 180 0 309 257 0 0 chr11 150233589 150233768 -549785 + (TG)n Simple_repeat Simple_repeat 2 180 0 422 224 0 6 chr11 150233829 150234008 -549545 + (TG)n Simple_repeat Simple_repeat 1 178 0 418 191 0 43 chr11 150234078 150234266 -549287 + (TG)n Simple_repeat Simple_repeat 1 180 0 336 219 0 0 chr11 150234314 150234437 -549116 + (TG)n Simple_repeat Simple_repeat 2 124 0 422 239 0 3 chr11 150234470 150234806 -548747 + (TG)n Simple_repeat Simple_repeat 1 334 0 528 226 7 0 chr11 150234855 150235287 -548266 + (TG)n Simple_repeat Simple_repeat 1 435 0 596 174 0 5 chr11 150235308 150235526 -548027 + (TG)n Simple_repeat Simple_repeat 1 216 0 213 206 143 16 chr11 150235852 150235915 -547638 + MIR SINE MIR 117 187 -75 299 215 67 109 chr11 150237593 150237779 -545774 + MIR SINE MIR 31 214 -48 887 264 131 50 chr11 150239031 150239475 -544078 + L2 LINE L2 2829 3308 -5 2271 172 81 2 chr11 150239782 150240105 -543448 - Tigger2 DNA MER2_type 0 2718 2355 186 43 0 0 chr11 150240105 150240128 -543425 + (GGA)n Simple_repeat Simple_repeat 2 24 0 2271 172 81 2 chr11 150240128 150240211 -543342 - Tigger2 DNA MER2_type -363 2355 2280 408 91 18 0 chr11 150240223 150240278 -543275 - Tigger2 DNA MER2_type -2662 56 1 246 217 0 14 chr11 150245321 150245390 -538163 + (CGGGG)n Simple_repeat Simple_repeat 4 71 0 242 131 49 16 chr11 150246128 150246189 -537364 + GA-rich Low_complexity Low_complexity 1 63 0 206 309 81 27 chr11 150247592 150247741 -535812 + MIR SINE MIR 57 213 -49 196 312 39 0 chr11 150247760 150247837 -535716 + MIR SINE MIR 183 262 0 447 196 188 21 chr11 150249316 150249510 -534043 - MIR SINE MIR -17 245 15 383 274 69 17 chr11 150250160 150250335 -533218 + MIR SINE MIR 78 261 -1 264 100 0 0 chr11 150250365 150250405 -533148 + (CA)n Simple_repeat Simple_repeat 1 40 0 458 251 202 25 chr11 150251022 150251265 -532288 - L1MEd LINE L1 -4921 1198 913 597 307 172 44 chr11 150251402 150251965 -531588 - L1MEd LINE L1 -5367 752 118 557 255 14 14 chr11 150251994 150252135 -531418 - MIR SINE MIR -1 261 121 217 309 45 55 chr11 150252229 150252339 -531214 - MIR SINE MIR -74 134 26 419 281 3 38 chr11 150252545 150252723 -530830 + L1ME2 LINE L1 6000 6333 -1 235 280 220 18 chr11 150252875 150253043 -530510 - L2 LINE L2 -21 3292 3091 2553 87 59 6 chr11 150253131 150253487 -530066 - THE1C LTR MaLR 0 375 1 324 0 0 0 chr11 150253503 150253539 -530014 + (TG)n Simple_repeat Simple_repeat 2 37 0 257 343 56 0 chr11 150253929 150254072 -529481 + L2 LINE L2 2149 2299 -1015 376 224 194 0 chr11 150254124 150254222 -529331 - MIR SINE MIR 0 262 146 343 289 128 49 chr11 150254233 150254437 -529116 + L2 LINE L2 2312 2531 -783 480 263 288 0 chr11 150254482 150254642 -528911 + MIR SINE MIR 31 236 -26 565 271 45 2 chr11 150254752 150254933 -528620 + MIR SINE MIR 45 231 -31 706 248 13 0 chr11 150255429 150255582 -527971 - MER45A DNA AcHobo -22 156 2 429 290 61 61 chr11 150255878 150256109 -527444 - MIR SINE MIR -2 260 30 681 342 73 48 chr11 150256148 150256690 -526863 + L1ME4a LINE L1 4473 5039 -1107 1170 190 0 16 chr11 150256690 150256943 -526610 + L1MA6 LINE L1 6045 6293 -7 681 342 73 48 chr11 150256943 150257114 -526439 + L1ME4a LINE L1 5039 5204 -942 1158 228 22 8 chr11 150257120 150257388 -526165 + L1M3e LINE L1 5 276 -6754 3290 251 78 18 chr11 150257398 150260411 -523142 + L1M3e LINE L1 1081 3950 -3156 4301 150 27 33 chr11 150260425 150261272 -522281 - L1MA7 LINE L1 -1 6290 5449 2142 173 47 22 chr11 150261277 150261728 -521825 + L1M3e LINE L1 4879 5340 -1766 456 292 148 50 chr11 150261765 150262261 -521292 + L1ME4a LINE L1 5255 5808 -313 2941 265 77 41 chr11 150262262 150263670 -519883 - L2 LINE L2 -1 3312 1855 311 274 141 7 chr11 150263714 150263849 -519704 + L2 LINE L2 1542 1694 -1620 236 216 0 0 chr11 150263849 150263900 -519653 + L1ME4a LINE L1 5823 5873 -248 777 228 12 12 chr11 150264170 150264337 -519216 + MER5A DNA MER1_type 2 168 -21 7682 24 0 1 chr11 150264593 150265691 -517862 + L1PA3 LINE L1 5031 6127 -28 44903 36 3 2 chr11 150266005 150272201 -511352 + L1PA3 LINE L1 3 6204 0 218 250 0 34 chr11 150272393 150272481 -511072 + (TA)n Simple_repeat Simple_repeat 1 85 0 239 303 25 41 chr11 150272482 150272604 -510949 + L1ME4a LINE L1 5983 6102 -19 1324 144 152 4 chr11 150272619 150272876 -510677 - AluJb SINE Alu -17 295 1 241 181 0 28 chr11 150272892 150272964 -510589 + GA-rich Low_complexity Low_complexity 3 72 0 3863 141 93 18 chr11 150273697 150274188 -509365 - MER50 LTR ERV1 -15 719 162 1860 147 0 7 chr11 150274188 150274496 -509057 - AluSx SINE Alu 0 306 1 3863 141 93 18 chr11 150274496 150274672 -508881 - MER50 LTR ERV1 -572 162 1 233 260 0 0 chr11 150275157 150275207 -508346 - MLT1J LTR MaLR -53 458 409 3395 194 37 48 chr11 150275473 150275986 -507567 - L1ME1 LINE L1 -5 6230 5729 1898 195 14 30 chr11 150275986 150276356 -507197 - MLT1A1 LTR MaLR 0 365 2 3395 194 37 48 chr11 150276356 150276689 -506864 - L1ME1 LINE L1 -506 5729 5394 4987 221 39 26 chr11 150276701 150276843 -506710 - L1ME1 LINE L1 -1254 4961 4822 1545 187 15 15 chr11 150276843 150277136 -506417 - AluJo SINE Alu 0 303 11 4987 221 39 26 chr11 150277136 150278392 -505161 - L1ME1 LINE L1 -1393 4822 3544 1773 261 47 22 chr11 150278397 150278945 -504608 - L1ME1 LINE L1 -5715 681 120 1310 200 9 0 chr11 150278981 150279211 -504342 - AluJb SINE Alu -78 234 3 356 161 16 0 chr11 150279253 150279315 -504238 - L1ME1 LINE L1 -6298 98 36 262 359 56 0 chr11 150280160 150280302 -503251 - MIR SINE MIR -17 245 96 658 321 48 4 chr11 150280724 150280973 -502580 + MIR SINE MIR 2 261 -1 205 271 0 0 chr11 150281179 150281227 -502326 - MIR SINE MIR -113 95 48 499 311 28 1 chr11 150281306 150281520 -502033 + MIR SINE MIR 36 253 -9 493 273 35 40 chr11 150281520 150281718 -501835 + MIR SINE MIR 3 199 -63 2278 110 10 7 chr11 150281719 150282029 -501524 + AluSp SINE Alu 1 311 -2 185 375 29 0 chr11 150282836 150282940 -500613 - MIR SINE MIR -61 147 41 287 278 34 46 chr11 150282993 150283135 -500418 - MIR SINE MIR -67 141 16 295 143 14 14 chr11 150283516 150283586 -499967 + CT-rich Low_complexity Low_complexity 2 71 0 285 185 0 0 chr11 150283788 150283853 -499700 + (TG)n Simple_repeat Simple_repeat 1 65 0 181 160 20 20 chr11 150283856 150283906 -499647 + GA-rich Low_complexity Low_complexity 1 50 0 709 295 58 38 chr11 150285217 150285826 -497727 - L2 LINE L2 -7 3306 2684 633 230 51 45 chr11 150285833 150286011 -497542 - MER5A DNA MER1_type -3 186 8 1426 191 90 0 chr11 150286721 150286999 -496554 - AluJo SINE Alu -9 303 1 221 379 21 0 chr11 150287562 150287702 -495851 - L2 LINE L2 -541 2773 2631 2439 185 88 9 chr11 150288124 150288589 -494964 - MER21B LTR ERV1 -94 769 268 981 55 86 0 chr11 150288591 150288719 -494834 - MER85 DNA T2_type 0 139 1 * 1583 209 14 7 chr11 150288719 150288988 -494565 - MER21B LTR ERV1 -592 271 1 360 318 131 33 chr11 150289048 150289262 -494291 + MIR SINE MIR 20 254 -8 4184 161 36 31 chr11 150289439 150290244 -493309 - L1MB7 LINE L1 -19 6165 5357 1573 214 3 19 chr11 150290573 150290920 -492633 + AluJo SINE Alu 1 342 0 330 319 76 32 chr11 150292130 150292315 -491238 + MIR SINE MIR 4 196 -66 27 0 0 0 chr11 150293103 150293130 -490423 + AT_rich Low_complexity Low_complexity 1 27 0 351 303 13 0 chr11 150293158 150293310 -490243 - L1ME LINE L1 -313 5808 5655 444 243 51 64 chr11 150293558 150293612 -489941 - L1ME4a LINE L1 -243 5878 5825 669 58 0 0 chr11 150293612 150293698 -489855 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 1938 134 0 34 chr11 150293700 150293998 -489555 - AluSx SINE Alu -24 288 1 444 243 51 64 chr11 150293998 150294175 -489378 - L1ME4a LINE L1 -297 5824 5647 223 250 0 0 chr11 150294549 150294593 -488960 + polypyrimidine Low_complexity Low_complexity 4 47 0 210 287 138 0 chr11 150294607 150294694 -488859 - L2 LINE L2 -3 3269 3171 360 0 0 0 chr11 150295995 150296035 -487518 + (TG)n Simple_repeat Simple_repeat 2 41 0 1610 132 4 0 chr11 150296064 150296292 -487261 - AluSx SINE Alu -83 229 1 327 329 99 12 chr11 150299430 150299591 -483962 + MIR SINE MIR 20 194 -68 264 277 92 28 chr11 150300154 150300295 -483258 + MIR SINE MIR 32 181 -81 371 329 56 35 chr11 150300306 150300537 -483016 + MIR SINE MIR 14 249 -13 223 169 26 52 chr11 150300762 150300839 -482714 + (TCTCTG)n Simple_repeat Simple_repeat 2 76 0 2051 113 4 0 chr11 150301039 150301314 -482239 + AluSg SINE Alu 2 277 -33 414 0 0 0 chr11 150301315 150301361 -482192 + (GA)n Simple_repeat Simple_repeat 1 46 0 312 29 0 0 chr11 150301922 150301957 -481596 + tRNA-Tyr-TAC tRNA tRNA 1 35 -41 3065 107 5 5 chr11 150301957 150302398 -481155 + L1PA13 LINE L1 5723 6163 0 22 35 0 0 chr11 150302850 150302879 -480674 + AT_rich Low_complexity Low_complexity 1 29 0 255 317 73 0 chr11 150304246 150304369 -479184 + MIR SINE MIR 81 212 -50 258 307 62 43 chr11 150305722 150305890 -477663 + MIR SINE MIR 27 192 -61 212 299 80 22 chr11 150307916 150308053 -475500 + L2 LINE L2 2897 3041 -231 456 325 27 0 chr11 150309365 150309569 -473984 + MIR SINE MIR 41 250 -12 2038 138 0 3 chr11 150309738 150310034 -473519 - AluSq SINE Alu 0 313 19 326 339 107 26 chr11 150310632 150311092 -472461 + L2 LINE L2 2394 2890 -424 1887 129 30 0 chr11 150311306 150311425 -472128 + AluSc SINE Alu 1 115 -194 230 0 33 0 chr11 150311425 150311455 -472098 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2421 72 0 13 chr11 150311457 150311763 -471790 + AluY SINE Alu 1 302 -9 1887 129 30 0 chr11 150311763 150311911 -471642 + AluSc SINE Alu 115 279 -30 260 214 29 68 chr11 150311936 150312039 -471514 + L2 LINE L2 3131 3229 -84 793 228 12 6 chr11 150312182 150312353 -471200 + L1ME2 LINE L1 5411 5582 -582 7036 34 2 30 chr11 150312356 150312836 -470717 + L1PA4 LINE L1 5308 5755 -400 7785 24 0 1 chr11 150312836 150314054 -469499 + L1PA3 LINE L1 4935 6152 -3 7036 34 2 30 chr11 150314054 150314445 -469108 + L1PA4 LINE L1 5755 6155 0 2160 223 25 54 chr11 150314452 150314493 -469060 + L1ME2 LINE L1 5570 5611 -723 2246 122 0 0 chr11 150314493 150314789 -468764 + AluSx SINE Alu 1 296 -16 2160 223 25 54 chr11 150314789 150315366 -468187 + L1ME2 LINE L1 5611 6332 -2 887 123 47 18 chr11 150315611 150315781 -467772 - MER53 DNA DNA -12 177 3 202 343 0 14 chr11 150315932 150316005 -467548 + MIR SINE MIR 45 116 -92 726 152 18 0 chr11 150316455 150316567 -466986 + AluJo/FLAM SINE Alu 2 115 -197 546 93 0 0 chr11 150316567 150316642 -466911 + AluSg/x SINE Alu 176 250 -62 1049 193 9 19 chr11 150316642 150316854 -466699 + AluJb SINE Alu 85 294 -18 495 289 116 17 chr11 150317284 150317516 -466037 + LTR33A LTR ERVL 221 475 -48 2104 148 3 0 chr11 150318684 150319042 -464511 - AluSx SINE Alu 0 359 1 221 192 0 39 chr11 150319624 150319676 -463877 + CT-rich Low_complexity Low_complexity 2 51 0 21 36 0 0 chr11 150319819 150319847 -463706 + AT_rich Low_complexity Low_complexity 1 28 0 358 295 94 7 chr11 150321348 150321497 -462056 - MIR SINE MIR -54 208 47 1214 191 2 135 chr11 150321498 150321672 -461881 + MLT1A2 LTR MaLR 2 88 -286 2016 101 3 17 chr11 150321672 150322017 -461536 + AluSp SINE Alu 1 341 0 1214 191 2 135 chr11 150322017 150322271 -461282 + MLT1A2 LTR MaLR 88 374 0 234 0 0 0 chr11 150323859 150323885 -459668 + (T)n Simple_repeat Simple_repeat 1 26 0 263 228 0 25 chr11 150324211 150324290 -459263 + (TAA)n Simple_repeat Simple_repeat 2 78 0 519 263 29 63 chr11 150324648 150324823 -458730 + MIR SINE MIR 21 189 -73 224 344 131 0 chr11 150325030 150325190 -458363 - MIR SINE MIR -19 243 63 376 312 100 40 chr11 150325295 150325918 -457635 + L2 LINE L2 2637 3301 -12 2175 132 112 2 chr11 150325920 150326314 -457239 - LTR23 LTR ERV1 0 437 1 211 222 121 20 chr11 150327321 150327420 -456133 + MIR SINE MIR 94 202 -60 795 182 0 0 chr11 150327424 150327556 -455997 + FLAM_C SINE Alu 1 132 -1 1083 217 78 30 chr11 150327567 150327902 -455651 + MLT1A2 LTR MaLR 1 352 -38 506 246 91 63 chr11 150327912 150328133 -455420 - LTR31 LTR ERV1 -14 589 364 27 29 0 0 chr11 150328169 150328203 -455350 + AT_rich Low_complexity Low_complexity 1 34 0 229 315 47 39 chr11 150328213 150328270 -455283 - LTR31 LTR ERV1 -323 296 241 2385 81 17 0 chr11 150328270 150328566 -454987 - AluSp SINE Alu -12 301 1 229 315 47 39 chr11 150328566 150328635 -454918 - LTR31 LTR ERV1 -378 241 169 251 309 49 24 chr11 150332198 150332321 -451232 - L2 LINE L2 -7 3306 3181 1595 243 189 32 chr11 150332389 150332954 -450599 + MLT1E1 LTR MaLR 1 654 0 1396 205 37 69 chr11 150333175 150333550 -450003 - MLT1A1 LTR MaLR -2 363 1 1300 246 63 104 chr11 150336126 150336744 -446809 + MLT1E LTR MaLR 1 593 0 234 287 40 10 chr11 150337264 150337365 -446188 + MER5A DNA MER1_type 9 112 -77 221 257 57 9 chr11 150337777 150337882 -445671 - L2 LINE L2 -952 2362 2253 475 278 48 5 chr11 150338980 150339167 -444386 + L1ME1 LINE L1 35 229 -6167 2557 286 54 15 chr11 150339451 150340607 -442946 + L1ME1 LINE L1 3260 4485 -1730 1940 270 56 33 chr11 150340732 150342040 -441513 + L1ME1 LINE L1 4889 6230 -5 29 0 0 0 chr11 150342148 150342177 -441376 + AT_rich Low_complexity Low_complexity 1 29 0 198 71 0 0 chr11 150342283 150342311 -441242 + (TG)n Simple_repeat Simple_repeat 1 28 0 2052 97 7 21 chr11 150344616 150344943 -438610 - AluSc SINE Alu 0 323 1 335 261 58 58 chr11 150345091 150345332 -438221 - L1 LINE L1 -2680 3466 3226 33 25 0 0 chr11 150345695 150345735 -437818 + AT_rich Low_complexity Low_complexity 1 40 0 293 247 148 37 chr11 150346325 150346487 -437066 - HAL1 LINE L1 -873 1634 1455 183 42 0 0 chr11 150346607 150346631 -436922 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1510 4 8 4 chr11 150346691 150346930 -436623 + (GAA)n Simple_repeat Simple_repeat 1 240 0 2692 29 3 0 chr11 150346936 150347242 -436311 + AluY SINE Alu 1 307 -4 645 296 20 10 chr11 150348689 150348892 -434661 - L1ME3A LINE L1 -24 6146 5942 195 186 0 0 chr11 150348973 150349016 -434537 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 395 278 102 28 chr11 150349411 150349587 -433966 + MIR SINE MIR 50 238 -24 268 84 42 0 chr11 150349767 150349827 -433726 + L1MA3 LINE L1 6241 6305 0 208 287 102 56 chr11 150350898 150351006 -432547 + L2 LINE L2 3158 3270 -2 298 296 124 12 chr11 150351016 150351185 -432368 - MIR SINE MIR -41 221 34 259 310 35 40 chr11 150351608 150351782 -431771 + C-rich Low_complexity Low_complexity 4 176 0 2367 107 0 0 chr11 150352348 150352656 -430897 + AluSq SINE Alu 6 313 0 541 101 0 0 chr11 150353274 150353353 -430200 - Alu SINE Alu -2 307 229 721 301 102 55 chr11 150355000 150355777 -427776 + L1MEd LINE L1 275 1087 -5032 189 252 69 0 chr11 150356486 150356581 -426972 + MIR SINE MIR 82 138 -70 484 204 45 8 chr11 150357084 150357216 -426337 - MLT1G LTR MaLR -42 548 412 455 323 7 0 chr11 150358052 150358207 -425346 - ERVL LTR ERVL -1832 3932 3777 250 163 0 75 chr11 150358471 150358618 -424935 + (TGAG)n Simple_repeat Simple_repeat 3 138 0 358 149 11 70 chr11 150358630 150359003 -424550 + (TGAG)n Simple_repeat Simple_repeat 1 350 0 342 313 36 0 chr11 150359109 150359275 -424278 - ERVL LTR ERVL -2342 3312 3141 2193 65 11 4 chr11 150359959 150360235 -423318 - AluSg SINE Alu -32 278 1 196 233 0 0 chr11 150361588 150361631 -421922 - MIR SINE MIR -116 146 104 180 390 17 0 chr11 150361744 150361803 -421750 + L2 LINE L2 3125 3184 -88 663 197 7 14 chr11 150361807 150361954 -421599 - L1MD3 LINE L1 -1 7994 7849 1591 271 56 16 chr11 150362124 150363210 -420343 + L1ME2 LINE L1 4820 5951 -213 260 239 12 49 chr11 150363286 150363449 -420104 + A-rich Low_complexity Low_complexity 3 159 0 212 182 30 53 chr11 150363432 150363564 -419989 + (CACAA)n Simple_repeat Simple_repeat 4 132 0 * 319 230 23 11 chr11 150365781 150365868 -417685 - MER53 DNA DNA 0 189 102 2036 148 68 6 chr11 150367203 150367568 -415985 + L1MA9 LINE L1 5397 5784 -528 851 155 6 69 chr11 150367568 150367742 -415811 + FRAM SINE Alu 8 170 -6 2067 169 51 45 chr11 150367742 150368191 -415362 + L1MA9 LINE L1 5786 6237 -75 1243 189 70 7 chr11 150368292 150368578 -414975 - L1ME LINE L1 -538 5628 5325 339 310 41 7 chr11 150368590 150368735 -414818 - L1ME LINE L1 -1254 4892 4743 1404 202 0 4 chr11 150368773 150369026 -414527 - AluJo SINE Alu -50 262 11 3871 213 48 21 chr11 150369037 150370097 -413456 - L1ME LINE L1 -1396 4750 3662 985 274 82 28 chr11 150370264 150370926 -412627 - L1M4 LINE L1 -1907 4239 3510 23 0 0 0 chr11 150371358 150371381 -412172 + AT_rich Low_complexity Low_complexity 1 23 0 321 173 0 0 chr11 150372956 150373008 -410545 + AluJo SINE Alu 87 138 -164 29 0 0 0 chr11 150373008 150373037 -410516 + AT_rich Low_complexity Low_complexity 1 29 0 273 196 20 0 chr11 150373823 150373874 -409679 - LTR67 LTR ERVL -15 542 491 328 239 0 0 chr11 150374505 150374576 -408977 - MER44D DNA MER2_type -444 261 191 1295 219 4 23 chr11 150374994 150375254 -408299 - MER44D DNA MER2_type -443 262 8 2265 113 3 7 chr11 150375733 150376043 -407510 + AluSx SINE Alu 1 309 -3 1714 159 150 12 chr11 150376044 150376390 -407163 - MSTA LTR MaLR -34 394 1 11246 124 19 18 chr11 150376998 150378851 -404702 - Tigger1 DNA MER2_type -556 1862 8 528 274 66 104 chr11 150379226 150379454 -404099 - L1ME3A LINE L1 -205 5965 5755 2301 106 3 3 chr11 150379454 150379756 -403797 - AluSc SINE Alu -7 302 1 528 274 66 104 chr11 150379756 150379892 -403661 - L1ME3A LINE L1 -415 5755 5615 278 210 48 0 chr11 150379898 150379960 -403593 + MER94 DNA DNA 7 71 -63 1851 143 10 10 chr11 150379976 150380277 -403276 + AluJo SINE Alu 12 312 0 253 276 165 10 chr11 150380422 150380719 -402834 - L1ME3A LINE L1 -807 5339 4997 2059 94 3 28 chr11 150380737 150381024 -402529 - AluSg SINE Alu -30 280 1 202 179 0 0 chr11 150381191 150381230 -402323 + T-rich Low_complexity Low_complexity 1 39 0 2114 123 10 10 chr11 150382685 150382994 -400559 + AluSx SINE Alu 2 310 -2 205 331 215 0 chr11 150383554 150383675 -399878 - MIR SINE MIR -6 256 110 230 232 77 50 chr11 150383963 150384144 -399409 + L1M4 LINE L1 2432 2617 -3529 333 295 49 25 chr11 150384512 150384634 -398919 - MIR3 SINE MIR -69 139 15 248 268 0 71 chr11 150385814 150385926 -397627 + C-rich Low_complexity Low_complexity 4 107 0 202 293 191 64 chr11 150386297 150386454 -397099 - L3 LINE CR1 -491 1086 910 198 0 0 0 chr11 150386489 150386511 -397042 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 315 0 0 0 chr11 150386510 150386545 -397008 + (CA)n Simple_repeat Simple_repeat 1 35 0 291 360 14 7 chr11 150386718 150386857 -396696 + MIR3 SINE MIR 37 176 -32 492 132 0 0 chr11 150386955 150387031 -396522 - MER116 DNA Mariner -1 79 4 420 337 59 8 chr11 150387768 150388023 -395530 - MARNA DNA Mariner -193 393 126 520 249 40 57 chr11 150388785 150388962 -394591 + MIR3 SINE MIR 34 207 -1 2012 85 33 0 chr11 150389744 150390043 -393510 + AluSg SINE Alu 1 308 0 2138 164 59 82 chr11 150390315 150390875 -392678 + L1MA8 LINE L1 5728 6274 -17 421 227 0 27 chr11 150391354 150391539 -392014 + (CCA)n Simple_repeat Simple_repeat 1 180 0 192 77 0 0 chr11 150391667 150391693 -391860 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 749 277 104 16 chr11 150392905 150393223 -390330 + MLT1B LTR MaLR 20 365 -25 278 360 0 0 chr11 150393646 150393732 -389821 + L3 LINE CR1 633 718 -859 3183 218 209 25 chr11 150394850 150396276 -387277 - L1MDb LINE L1 -3939 2467 797 1747 176 48 2 chr11 150396420 150396817 -386736 - L1MA4 LINE L1 0 6300 5886 2152 111 23 7 chr11 150397148 150397455 -386098 + AluSx SINE Alu 1 312 0 2032 141 27 21 chr11 150397547 150397923 -385630 + Tigger2a DNA MER2_type 1 378 -56 2647 30 10 0 chr11 150398461 150398765 -384788 - AluYa5 SINE Alu -4 307 1 390 244 0 0 chr11 150400000 150400172 -383381 + (TG)n Simple_repeat Simple_repeat 1 172 0 378 191 0 48 chr11 150400200 150400389 -383164 + (TG)n Simple_repeat Simple_repeat 1 180 0 507 215 0 0 chr11 150400437 150400609 -382944 + (TG)n Simple_repeat Simple_repeat 1 172 0 2294 183 62 15 chr11 150400755 150401373 -382180 - L1 LINE L1 -2603 3543 2897 471 256 93 69 chr11 150401848 150402269 -381284 - L1ME4a LINE L1 -74 6047 5617 686 286 40 10 chr11 150402710 150402909 -380644 - MER58A DNA MER1_type 0 224 20 288 79 10 89 chr11 150403730 150403831 -379722 + (TGGGGG)n Simple_repeat Simple_repeat 2 94 0 223 169 26 52 chr11 150404198 150404275 -379278 + (CAGAGA)n Simple_repeat Simple_repeat 2 76 0 463 329 56 35 chr11 150404500 150404731 -378822 - MIR SINE MIR -13 249 14 324 297 85 27 chr11 150404742 150404916 -378637 - MIR SINE MIR -69 139 1 1762 178 3 38 chr11 150405742 150406056 -377497 + AluJb SINE Alu 1 303 -9 300 182 30 0 chr11 150407264 150407330 -376223 - MLT1E3 LTR MaLR 0 624 557 371 231 34 0 chr11 150407555 150407672 -375881 + MLT1-int LTR MaLR 14 134 -1237 1613 161 197 11 chr11 150407880 150408240 -375313 + MSTA LTR MaLR 1 427 -1 345 342 27 16 chr11 150408452 150408639 -374914 + MLT1-int LTR MaLR 696 884 -487 2191 93 7 0 chr11 150408772 150409050 -374503 + AluSx SINE Alu 1 280 -32 227 357 136 14 chr11 150409302 150409442 -374111 + MER5B DNA MER1_type 17 173 -5 193 303 121 30 chr11 150411335 150411500 -372053 - L2 LINE L2 -38 3275 3096 234 306 123 26 chr11 150411613 150411995 -371558 - L2 LINE L2 -818 2496 2078 313 62 83 0 chr11 150413155 150413203 -370350 - MER51A LTR ERV1 -582 52 1 * 711 223 43 26 chr11 150413203 150413431 -370122 - MLT1D LTR MaLR -349 156 2 223 264 209 11 chr11 150413473 150413564 -369989 + MIR SINE MIR 28 136 -72 822 254 58 48 chr11 150413666 150413996 -369557 + LTR16A LTR ERVL 65 397 -53 1555 196 3 21 chr11 150414140 150414458 -369095 - AluJo SINE Alu 0 313 1 232 279 33 0 chr11 150414935 150414996 -368557 - L1ME LINE L1 -5998 72 10 379 252 93 56 chr11 150414997 150415267 -368286 - L1ME LINE L1 -319 5802 5523 248 281 105 35 chr11 150415919 150416033 -367520 + MIR3 SINE MIR 40 161 -47 441 295 86 109 chr11 150416168 150416690 -366863 + L1ME4a LINE L1 5485 5994 -127 1386 156 45 66 chr11 150416729 150416975 -366578 - Tigger7 DNA MER2_type -16 2471 2232 2386 92 3 0 chr11 150416975 150417269 -366284 - AluSx SINE Alu -17 295 1 1386 156 45 66 chr11 150417269 150417356 -366197 - Tigger7 DNA MER2_type -255 2232 2145 2175 156 40 28 chr11 150417459 150417685 -365868 - MSTA LTR MaLR 0 428 193 2283 67 7 7 chr11 150417685 150417982 -365571 - AluY SINE Alu -14 297 1 2175 156 40 28 chr11 150417982 150418178 -365375 - MSTA LTR MaLR -235 193 1 435 279 76 38 chr11 150418530 150418767 -364786 - L1ME4a LINE L1 -248 5873 5628 1273 151 0 41 chr11 150420626 150420844 -362709 + AluJb SINE Alu 103 311 -1 1936 208 37 11 chr11 150420844 150421306 -362247 + L1MA4 LINE L1 5823 6296 -4 1199 202 3 109 chr11 150421332 150421654 -361899 + AluJo SINE Alu 2 289 -13 4058 13 23 6 chr11 150421659 150422087 -361466 - SVA Other Other 0 1386 695 554 43 21 11 chr11 150422087 150422180 -361373 + SVA Other Other 695 788 -598 2208 140 7 0 chr11 150422199 150422506 -361047 + AluSx SINE Alu 1 309 -3 2251 101 27 0 chr11 150422946 150423244 -360309 + AluSg SINE Alu 1 306 -4 409 209 105 0 chr11 150423380 150423485 -360068 + L2 LINE L2 3198 3313 0 383 261 114 38 chr11 150423647 150423940 -359613 + L1M4 LINE L1 3608 3942 -2199 2209 97 17 0 chr11 150423940 150424240 -359313 + AluY SINE Alu 1 305 -6 686 250 10 10 chr11 150425089 150425281 -358272 - L1MD1 LINE L1 -401 5841 5650 234 328 56 8 chr11 150425979 150426104 -357449 + MIR SINE MIR 16 146 -62 2222 138 61 19 chr11 150426155 150426724 -356829 - MER4E LTR ERV1 -10 756 1 2285 124 0 0 chr11 150426992 150427298 -356255 - AluSx SINE Alu -6 306 1 192 321 107 18 chr11 150427379 150427491 -356062 + L2 LINE L2 3151 3272 0 289 320 150 10 chr11 150427498 150427698 -355855 - MIR SINE MIR -3 259 32 238 289 64 80 chr11 150427982 150428169 -355384 + MIR3 SINE MIR 8 191 -17 2173 162 70 15 chr11 150428602 150429004 -354549 - MSTB LTR MaLR -2 424 1 7343 196 61 8 chr11 150429004 150430561 -352992 - MSTB-int LTR MaLR 0 1651 13 261 333 50 8 chr11 150431230 150431350 -352203 + MIR SINE MIR 106 230 -32 258 158 0 0 chr11 150431610 150431648 -351905 - MIR SINE MIR -60 148 111 237 256 204 35 chr11 150433684 150433880 -349673 - MIR3 SINE MIR -28 234 16 2197 107 7 0 chr11 150434666 150434955 -348598 - AluSx SINE Alu -15 297 7 685 291 61 32 chr11 150434984 150435328 -348225 - L1MA9 LINE L1 -38 6274 5921 664 139 0 153 chr11 150435339 150435483 -348070 - FRAM SINE Alu -14 162 41 194 365 0 0 chr11 150436952 150437015 -346538 - L2 LINE L2 -49 3223 3161 999 206 46 117 chr11 150437032 150437425 -346128 - MLT1A1 LTR MaLR 0 365 1 297 371 59 39 chr11 150438119 150438526 -345027 - L2 LINE L2 -1004 2310 1896 2089 130 14 3 chr11 150438526 150438819 -344734 + AluSx SINE Alu 1 296 -16 1965 232 39 30 chr11 150438820 150439384 -344169 + L1ME1 LINE L1 5595 6163 -3 2036 165 108 3 chr11 150440737 150441124 -342429 + MSTA LTR MaLR 1 428 0 420 96 219 0 chr11 150441142 150441215 -342338 + THE1B LTR MaLR 1 89 -275 753 262 39 39 chr11 150441376 150441632 -341921 + MIR SINE MIR 2 257 -5 886 144 0 0 chr11 150441748 150441880 -341673 + AluJb SINE Alu 1 132 -180 637 230 145 25 chr11 150441901 150442101 -341452 - MIR SINE MIR 0 262 39 2341 92 3 0 chr11 150442166 150442461 -341092 + AluSg SINE Alu 1 296 -14 425 306 6 17 chr11 150444199 150444379 -339174 + (TG)n Simple_repeat Simple_repeat 1 178 0 21 0 0 0 chr11 150444659 150444680 -338873 + AT_rich Low_complexity Low_complexity 1 21 0 1128 243 119 33 chr11 150445600 150446110 -337443 - MLT1E1 LTR MaLR -53 601 1 279 317 49 24 chr11 150446178 150446301 -337252 + L2 LINE L2 3181 3306 -7 21 0 0 0 chr11 150447824 150447845 -335708 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr11 150447925 150447974 -335579 + AT_rich Low_complexity Low_complexity 1 49 0 1900 227 21 11 chr11 150447991 150448554 -334999 - L1MC1 LINE L1 -9 6324 5603 330 309 18 18 chr11 150449021 150449131 -334422 - ERVL LTR ERVL -1934 3062 2953 647 347 63 6 chr11 150449258 150449621 -333932 - ERVL LTR ERVL -2256 2740 2357 614 336 65 14 chr11 150449694 150450188 -333365 - ERVL LTR ERVL -3481 2283 1765 1180 206 68 47 chr11 150450555 150450994 -332559 - L1ME LINE L1 -528 5638 5192 319 123 0 31 chr11 150450997 150451062 -332491 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 2272 105 0 0 chr11 150451063 150451349 -332204 - AluSg SINE Alu -24 286 1 749 251 47 36 chr11 150451436 150451798 -331755 - L1ME LINE L1 -957 5189 4824 276 224 118 130 chr11 150451769 150451930 -331623 - HAL1 LINE L1 -2321 186 28 * 243 0 0 0 chr11 150452612 150452639 -330914 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 273 316 94 0 chr11 150455046 150455163 -328390 - L2 LINE L2 -5 3267 3140 241 354 0 10 chr11 150455670 150455766 -327787 + (TG)n Simple_repeat Simple_repeat 2 96 0 2302 104 13 0 chr11 150456099 150456398 -327155 + AluSx SINE Alu 5 307 -5 1891 218 63 6 chr11 150456534 150457012 -326541 - L1MD2 LINE L1 -1 6358 5854 574 225 18 65 chr11 150457154 150457323 -326230 - MLT1A1 LTR MaLR -204 161 1 36 0 0 0 chr11 150458077 150458113 -325440 + AT_rich Low_complexity Low_complexity 1 36 0 2252 106 0 7 chr11 150458122 150458414 -325139 - AluSx SINE Alu -22 290 1 838 160 0 21 chr11 150462248 150462392 -321161 - FLAM_C SINE Alu -2 141 1 289 273 261 6 chr11 150463834 150463999 -319554 - MIR SINE MIR -12 250 44 588 208 98 33 chr11 150466030 150466213 -317340 - MER58C DNA MER1_type -2 213 19 1157 267 58 32 chr11 150466219 150466803 -316750 - ERVL LTR ERVL -3081 2683 2085 225 278 40 17 chr11 150467197 150467373 -316180 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 223 359 0 0 chr11 150471390 150471454 -312099 - MIR3 SINE MIR -21 187 124 1729 107 0 0 chr11 150471749 150471973 -311580 - AluSg/x SINE Alu -1 311 88 2066 128 0 52 chr11 150472443 150472770 -310783 + AluSx SINE Alu 1 310 -2 382 343 24 29 chr11 150475865 150476072 -307481 + MIR SINE MIR 51 256 -6 1254 211 4 4 chr11 150479116 150479343 -304210 - MLT1D LTR MaLR -4 501 275 2263 89 17 0 chr11 150479343 150479645 -303908 - MER57B LTR ERV1 0 434 128 207 0 0 0 chr11 150480674 150480697 -302856 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 584 259 93 28 chr11 150481059 150481275 -302278 - MER96B DNA MER1_type? -186 231 2 319 273 152 0 chr11 150481275 150481407 -302146 + MIR SINE MIR 111 262 0 797 227 194 45 chr11 150482214 150482725 -300828 - LTR50 LTR ERVL -188 607 21 300 267 0 0 chr11 150484554 150484614 -298939 - L2 LINE L2 -4 3268 3209 247 364 0 11 chr11 150484945 150485033 -298520 + L2 LINE L2 3139 3225 -47 275 411 34 13 chr11 150485890 150486126 -297427 + MIR SINE MIR 14 254 -8 21 0 0 0 chr11 150488077 150488098 -295455 + AT_rich Low_complexity Low_complexity 1 21 0 2062 114 16 29 chr11 150489351 150489658 -293895 - AluSx SINE Alu -9 303 1 238 375 56 39 chr11 150489658 150490066 -293487 + L2 LINE L2 1896 2310 -1004 1070 204 46 117 chr11 150490760 150491153 -292400 + MLT1A1 LTR MaLR 1 365 0 295 308 84 0 chr11 150492454 150492561 -290992 + L2 LINE L2 3156 3271 -1 528 246 29 7 chr11 150492613 150492751 -290802 - MIR3 SINE MIR -45 163 23 300 313 109 56 chr11 150492822 150493180 -290373 - L2 LINE L2 -8 3305 2929 308 269 211 18 chr11 150493522 150493693 -289860 + MIR SINE MIR 49 252 -10 214 267 100 0 chr11 150493754 150493814 -289739 + L2 LINE L2 3236 3301 -12 372 152 0 0 chr11 150498231 150498297 -285256 + CT-rich Low_complexity Low_complexity 2 67 0 185 186 23 47 chr11 150498566 150498609 -284944 - L2 LINE L2 -33 3280 3239 215 323 72 56 chr11 150498718 150498969 -284584 - L2 LINE L2 -192 3080 2826 320 299 137 8 chr11 150499356 150499473 -284080 - L2 LINE L2 -9 3263 3132 569 300 112 9 chr11 150499818 150500051 -283502 + MIR SINE MIR 2 258 -4 23 0 0 0 chr11 150500056 150500079 -283474 + AT_rich Low_complexity Low_complexity 1 23 0 297 329 111 39 chr11 150500851 150501264 -282289 + L2 LINE L2 2429 2871 -443 197 298 107 83 chr11 150502575 150502743 -280810 - MIR3 SINE MIR -11 197 26 216 67 0 0 chr11 150504680 150504710 -278843 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 321 261 61 89 chr11 150505003 150505183 -278370 - MIR3 SINE MIR -19 189 15 536 252 24 36 chr11 150505282 150505458 -278095 - MER5B DNA MER1_type -6 172 3 249 108 0 0 chr11 150505491 150505528 -278025 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 357 294 82 49 chr11 150507503 150507687 -275866 + MIR SINE MIR 40 229 -33 338 173 13 0 chr11 150508981 150509056 -274497 + CT-rich Low_complexity Low_complexity 2 77 0 180 0 0 0 chr11 150509782 150509802 -273751 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 267 343 38 0 chr11 150510373 150510478 -273075 - L2 LINE L2 -10 3262 3154 222 118 0 0 chr11 150510626 150510660 -272893 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 267 312 71 52 chr11 150510824 150510978 -272575 - L2 LINE L2 -261 3011 2855 2611 161 16 18 chr11 150510987 150511429 -272124 - MLT1C LTR MaLR 0 467 27 884 311 141 36 chr11 150511564 150512339 -271214 - L2 LINE L2 -573 2741 1886 211 347 138 4 chr11 150512349 150512574 -270979 - L2 LINE L2 -2702 612 358 213 240 20 0 chr11 150513091 150513141 -270412 - L2 LINE L2 -1 3271 3221 616 274 54 25 chr11 150514052 150514293 -269260 + MIR SINE MIR 15 262 0 427 243 14 14 chr11 150514304 150514588 -268965 + (CACCAT)n Simple_repeat Simple_repeat 1 284 0 264 258 0 0 chr11 150514602 150514699 -268854 + (CCA)n Simple_repeat Simple_repeat 3 99 0 387 149 0 0 chr11 150514988 150515062 -268491 + (TC)n Simple_repeat Simple_repeat 1 74 0 5956 170 20 7 chr11 150515238 150517241 -266312 - L1PA16 LINE L1 -9 6157 4127 222 151 27 55 chr11 150517978 150518051 -265502 + (TA)n Simple_repeat Simple_repeat 2 72 0 337 363 14 7 chr11 150518665 150518811 -264742 + MIR SINE MIR 46 192 -70 180 176 0 0 chr11 150518817 150518851 -264702 + (TATG)n Simple_repeat Simple_repeat 1 34 0 740 267 10 10 chr11 150519360 150519555 -263998 - MIR SINE MIR -3 259 65 247 316 79 0 chr11 150520440 150520554 -262999 - L2 LINE L2 -1 3312 3190 269 268 0 0 chr11 150520558 150520629 -262924 + (CAT)n Simple_repeat Simple_repeat 2 72 0 261 83 0 0 chr11 150520657 150520693 -262860 + (TA)n Simple_repeat Simple_repeat 1 36 0 603 291 11 6 chr11 150520693 150520875 -262678 - MIR SINE MIR -78 184 2 423 296 8 24 chr11 150521011 150521136 -262417 - L2 LINE L2 0 3313 3191 2245 278 84 8 chr11 150521396 150522253 -261300 + L1ME3A LINE L1 5240 6161 -9 21 0 0 0 chr11 150524158 150524179 -259374 + AT_rich Low_complexity Low_complexity 1 21 0 359 283 136 23 chr11 150524472 150524649 -258904 + MIR SINE MIR 49 245 -17 2740 295 126 39 chr11 150524836 150525005 -258548 - L2 LINE L2 0 3313 3160 2405 80 0 3 chr11 150525005 150525304 -258249 - AluSx SINE Alu -14 298 1 2740 295 126 39 chr11 150525304 150527080 -256473 - L2 LINE L2 -153 3160 1210 215 336 142 0 chr11 150527108 150527221 -256332 - L2 LINE L2 -8 3264 3136 400 313 70 93 chr11 150527387 150527494 -256059 - L2 LINE L2 -3 3269 3161 655 196 203 0 chr11 150527494 150527642 -255911 + MER5B DNA MER1_type 1 178 0 400 313 70 93 chr11 150527642 150527975 -255578 - L2 LINE L2 -111 3161 2839 267 296 74 59 chr11 150528037 150528240 -255313 - MER110 LTR ERV1 -6 485 280 2008 138 3 7 chr11 150528782 150529097 -254456 + AluSx SINE Alu 12 312 0 300 266 219 26 chr11 150529516 150529749 -253804 - L1ME LINE L1 -363 5801 5524 * 1218 296 85 40 chr11 150529746 150531268 -252285 - L1P5 LINE L1 -679 5475 3878 301 242 71 0 chr11 150531463 150531562 -251991 + MER5A DNA MER1_type 4 109 -80 21 0 0 0 chr11 150531792 150531813 -251740 + AT_rich Low_complexity Low_complexity 1 21 0 252 329 62 25 chr11 150531826 150531987 -251566 - L1 LINE L1 -2372 3774 3608 574 319 65 29 chr11 150532253 150532635 -250918 - L1 LINE L1 -2848 3298 2903 43 64 0 0 chr11 150533304 150533382 -250171 + AT_rich Low_complexity Low_complexity 1 78 0 207 111 28 0 chr11 150533763 150533799 -249754 + A-rich Low_complexity Low_complexity 4 40 0 233 91 30 0 chr11 150533992 150534025 -249528 - MLT1F LTR MaLR -508 34 1 231 321 12 0 chr11 150534782 150534863 -248690 - MIR SINE MIR -106 102 21 2110 180 70 2 chr11 150535284 150535685 -247868 - MSTA LTR MaLR 0 428 1 1692 31 0 0 chr11 150535813 150536040 -247513 + L1PA4 LINE L1 5942 6168 0 22 0 0 0 chr11 150537440 150537462 -246091 + AT_rich Low_complexity Low_complexity 1 22 0 369 0 0 0 chr11 150537575 150537616 -245937 + (TG)n Simple_repeat Simple_repeat 1 41 0 1046 161 4 0 chr11 150538789 150539060 -244493 + (TCCA)n Simple_repeat Simple_repeat 1 272 0 210 118 0 0 chr11 150539074 150539108 -244445 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 228 316 13 0 chr11 150539136 150539212 -244341 - L2 LINE L2 -6 3266 3190 4639 125 4 3 chr11 150539273 150539962 -243591 - L1PA11 LINE L1 -1 6173 5484 444 320 117 9 chr11 150540479 150540774 -242779 - L2 LINE L2 -258 3055 2734 391 286 25 0 chr11 150540777 150540896 -242657 + MER94 DNA DNA 2 123 -11 205 371 18 29 chr11 150541553 150541723 -241830 + L2 LINE L2 1698 1865 -1449 247 330 64 9 chr11 150541866 150541975 -241578 + L2 LINE L2 3142 3256 -16 216 224 209 0 chr11 150542008 150542075 -241478 + L2 LINE L2 3232 3312 -1 269 303 115 8 chr11 150542558 150542680 -240873 - L2 LINE L2 0 3313 3179 333 320 20 48 chr11 150542861 150543008 -240545 - MIR3 SINE MIR -46 162 20 296 254 0 0 chr11 150543062 150543133 -240420 - MER103 DNA DNA -76 90 20 201 262 0 68 chr11 150544010 150544113 -239440 + CT-rich Low_complexity Low_complexity 2 97 0 204 277 0 0 chr11 150544334 150544381 -239172 + CT-rich Low_complexity Low_complexity 2 48 0 212 317 125 0 chr11 150544432 150544552 -239001 + L2 LINE L2 3137 3271 -1 324 188 0 0 chr11 150545123 150545192 -238361 + (TCCA)n Simple_repeat Simple_repeat 2 70 0 467 321 23 28 chr11 150545606 150545824 -237729 + MIR SINE MIR 32 248 -14 1896 261 21 21 chr11 150546251 150546779 -236774 - MER68 LTR ERV1 -7 555 28 212 194 0 0 chr11 150547782 150547818 -235735 + A-rich Low_complexity Low_complexity 1 36 0 207 325 34 17 chr11 150548236 150548353 -235200 + L3 LINE CR1 1264 1382 -195 192 289 36 12 chr11 150548954 150549037 -234516 - MIR3 SINE MIR -5 203 119 222 261 0 0 chr11 150550101 150550147 -233406 + polypurine Low_complexity Low_complexity 4 49 0 467 279 78 50 chr11 150550681 150550939 -232614 - L3 LINE CR1 -1 1576 1312 412 316 29 7 chr11 150551186 150551322 -232231 - MIR SINE MIR -98 164 26 210 149 27 14 chr11 150551696 150551770 -231783 + (CA)n Simple_repeat Simple_repeat 1 75 0 288 162 14 49 chr11 150551793 150551935 -231618 + (CA)n Simple_repeat Simple_repeat 1 137 0 322 171 17 45 chr11 150551969 150552145 -231408 + (CA)n Simple_repeat Simple_repeat 1 171 0 353 187 21 41 chr11 150552165 150552564 -230989 + (CA)n Simple_repeat Simple_repeat 1 390 0 222 206 0 0 chr11 150553703 150553776 -229777 + (TG)n Simple_repeat Simple_repeat 2 74 0 509 230 6 0 chr11 150553801 150553979 -229574 + (TG)n Simple_repeat Simple_repeat 2 180 0 209 222 0 56 chr11 150553980 150554052 -229501 + (TATG)n Simple_repeat Simple_repeat 3 70 0 180 216 0 0 chr11 150554067 150554118 -229435 + (TG)n Simple_repeat Simple_repeat 1 51 0 190 301 68 0 chr11 150554485 150554558 -228995 - MIR3 SINE MIR -6 202 125 188 336 47 0 chr11 150554701 150554850 -228703 + L2 LINE L2 2595 2750 -564 325 286 187 15 chr11 150556265 150556468 -227085 - MIR SINE MIR -6 256 19 327 313 45 15 chr11 150556552 150556686 -226867 + MIR SINE MIR 20 157 -105 1820 67 0 0 chr11 150559179 150559403 -224150 - L1PA8 LINE L1 -483 5671 5448 3941 48 2 0 chr11 150559403 150559875 -223678 + L1PA8 LINE L1 5679 6154 -18 367 215 0 32 chr11 150559891 150559984 -223569 - L1MC4 LINE L1 -1339 6703 6614 300 240 0 62 chr11 150559916 150560012 -223541 + L1MC4 LINE L1 6614 6703 -1339 * 302 182 45 0 chr11 150559997 150560063 -223490 - L1MCa LINE L1 -4362 2064 1996 361 24 0 0 chr11 150560106 150560148 -223405 + L1P2 LINE L1 5459 5500 -655 * 1311 60 6 0 chr11 150560144 150560310 -223243 - L1PA8 LINE L1 -152 6020 5854 574 28 73 0 chr11 150560311 150560420 -223133 + (TA)n Simple_repeat Simple_repeat 1 117 0 263 313 47 16 chr11 150561376 150561504 -222049 + MIR SINE MIR 20 151 -111 2070 141 0 0 chr11 150563212 150563510 -220043 - AluSx SINE Alu -14 298 1 2177 105 16 13 chr11 150564640 150564946 -218607 + AluSx SINE Alu 1 307 -5 423 0 0 0 chr11 150564946 150564993 -218560 + (TA)n Simple_repeat Simple_repeat 1 47 0 795 316 72 18 chr11 150565236 150565739 -217814 - L1MC4 LINE L1 -184 7858 7329 21 82 0 0 chr11 150565988 150566037 -217516 + AT_rich Low_complexity Low_complexity 1 49 0 288 0 0 0 chr11 150567829 150567861 -215692 + (CA)n Simple_repeat Simple_repeat 2 33 0 1429 227 64 49 chr11 150568469 150568513 -215040 - MLT2D LTR ERVL -3 411 369 222 118 0 0 chr11 150568513 150568547 -215006 + (TG)n Simple_repeat Simple_repeat 2 35 0 1429 227 64 49 chr11 150568547 150568907 -214646 - MLT2D LTR ERVL -45 369 1 373 307 22 36 chr11 150569882 150570019 -213534 - MIR3 SINE MIR -61 147 13 572 281 58 65 chr11 150570330 150570478 -213075 - MIR SINE MIR 0 262 115 2471 96 3 0 chr11 150570478 150570790 -212763 + AluSp SINE Alu 1 313 0 572 281 58 65 chr11 150570790 150570901 -212652 - MIR SINE MIR -147 115 5 288 268 189 8 chr11 150571189 150571316 -212237 - MIR SINE MIR -1 261 112 292 237 186 17 chr11 150571530 150571648 -211905 - L2 LINE L2 -1 3312 3175 310 274 147 0 chr11 150573227 150573329 -210224 - MIR SINE MIR -12 250 134 1659 131 4 8 chr11 150573390 150573658 -209895 + L1MA9 LINE L1 6046 6312 0 181 390 134 12 chr11 150574015 150574187 -209366 + L2 LINE L2 3067 3259 -13 467 293 37 18 chr11 150574211 150574375 -209178 - MIR SINE MIR -94 168 2 1890 140 0 0 chr11 150574404 150574669 -208884 + AluSx SINE Alu 36 300 -12 23 0 0 0 chr11 150575111 150575134 -208419 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr11 150575255 150575279 -208274 + AT_rich Low_complexity Low_complexity 1 24 0 516 45 0 0 chr11 150576478 150576545 -207008 + (TC)n Simple_repeat Simple_repeat 1 67 0 254 296 15 82 chr11 150577314 150577449 -206104 + MIR3 SINE MIR 58 183 -25 376 172 23 0 chr11 150578455 150578542 -205011 + CT-rich Low_complexity Low_complexity 3 91 0 303 308 54 23 chr11 150581802 150581932 -201621 - L2 LINE L2 -9 3304 3171 255 181 28 28 chr11 150581992 150582064 -201489 + (TA)n Simple_repeat Simple_repeat 2 73 0 184 336 37 0 chr11 150582127 150582234 -201319 - L2 LINE L2 -225 3047 2937 1651 229 54 42 chr11 150582550 150583028 -200525 - MER20B DNA MER1_type -44 739 220 2545 62 0 0 chr11 150583028 150583336 -200217 - AluY SINE Alu -3 308 1 1651 229 54 42 chr11 150583336 150583559 -199994 - MER20B DNA MER1_type -563 220 1 286 288 12 0 chr11 150586307 150586387 -197166 - L2 LINE L2 -8 3305 3225 349 317 62 35 chr11 150586686 150587024 -196529 - L2 LINE L2 -497 2817 2471 535 300 57 9 chr11 150587408 150587635 -195918 - MIR SINE MIR -3 259 22 280 275 131 12 chr11 150590015 150590175 -193378 - MIR3 SINE MIR 0 208 30 260 352 38 9 chr11 150590302 150590407 -193146 - MIR SINE MIR -67 141 34 383 305 130 0 chr11 150591449 150591626 -191927 - MIR SINE MIR -35 227 28 222 287 112 58 chr11 150591861 150592084 -191469 + L2 LINE L2 2983 3217 -96 417 302 44 29 chr11 150592662 150592867 -190686 + MIR3 SINE MIR 1 208 0 31 26 0 0 chr11 150596806 150596844 -186709 + GC_rich Low_complexity Low_complexity 1 38 0 206 195 13 39 chr11 150597083 150597160 -186393 + (CCCCG)n Simple_repeat Simple_repeat 3 77 0 236 271 0 0 chr11 150600624 150600683 -182870 + CT-rich Low_complexity Low_complexity 3 61 0 587 251 4 88 chr11 150601146 150601373 -182180 - MIR SINE MIR -2 260 53 233 276 241 0 chr11 150601454 150601570 -181983 - MIR SINE MIR -72 190 47 2163 117 42 28 chr11 150601950 150602309 -181244 - THE1B LTR MaLR 0 364 1 496 315 138 33 chr11 150603146 150603572 -179981 + L2 LINE L2 2841 3311 -2 454 266 27 61 chr11 150604755 150604985 -178568 - MIR SINE MIR -24 238 15 233 232 14 0 chr11 150606085 150606154 -177399 + (TA)n Simple_repeat Simple_repeat 1 70 0 1812 200 38 60 chr11 150607468 150607937 -175616 + MLT1C LTR MaLR 3 461 -6 23 33 0 0 chr11 150607948 150607978 -175575 + AT_rich Low_complexity Low_complexity 1 30 0 616 318 44 59 chr11 150608313 150608700 -174853 + L2 LINE L2 237 617 -2697 803 314 84 59 chr11 150608835 150609701 -173852 + L2 LINE L2 2420 3312 -1 417 231 168 59 chr11 150610162 150610365 -173188 + MIR SINE MIR 5 229 -33 974 250 66 52 chr11 150610755 150611195 -172358 + MLT1J1 LTR MaLR 1 446 0 1902 156 6 16 chr11 150611730 150612045 -171508 - AluJb SINE Alu 0 312 1 248 211 119 46 chr11 150612226 150612335 -171218 + L2 LINE L2 3197 3313 0 185 273 0 0 chr11 150612364 150612408 -171145 - L2 LINE L2 -22 3250 3207 252 344 115 0 chr11 150612526 150612648 -170905 - MER91A DNA MER1_type -55 141 6 278 211 0 105 chr11 150614373 150614468 -169085 + MIR SINE MIR 102 186 -76 225 332 146 11 chr11 150615423 150615703 -167850 - L2 LINE L2 -125 3188 2871 26 0 0 0 chr11 150615806 150615832 -167721 + AT_rich Low_complexity Low_complexity 1 26 0 28 0 0 0 chr11 150617447 150617475 -166078 + AT_rich Low_complexity Low_complexity 1 28 0 1924 137 32 0 chr11 150617522 150617806 -165747 + AluJb SINE Alu 1 293 -19 411 21 0 0 chr11 150617825 150617873 -165680 + (TG)n Simple_repeat Simple_repeat 2 49 0 217 275 58 43 chr11 150617929 150617998 -165555 - L2 LINE L2 -35 3237 3168 585 282 11 16 chr11 150618433 150618621 -164932 - L2 LINE L2 -5 3308 3122 26 0 0 0 chr11 150620181 150620207 -163346 + AT_rich Low_complexity Low_complexity 1 26 0 275 228 76 11 chr11 150620724 150620816 -162737 + MIR SINE MIR 139 236 -26 207 0 0 0 chr11 150620818 150620841 -162712 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 229 304 202 12 chr11 150620873 150621120 -162433 - L2 LINE L2 -65 3248 2955 1307 107 21 0 chr11 150622817 150623004 -160549 + L1PB3 LINE L1 5962 6152 -2 205 171 0 0 chr11 150623021 150623056 -160497 + (CA)n Simple_repeat Simple_repeat 2 36 0 442 239 164 6 chr11 150623169 150623328 -160225 - MIR SINE MIR -15 247 64 1086 334 73 30 chr11 150624390 150625774 -157779 - L2 LINE L2 -1 3312 1859 229 325 0 0 chr11 150627751 150627828 -155725 + MIR SINE MIR 49 125 -137 284 206 93 10 chr11 150627866 150627963 -155590 + L2 LINE L2 3121 3225 -47 358 265 111 37 chr11 150628554 150628716 -154837 - MLT1J2 LTR MaLR 0 450 277 2030 155 0 0 chr11 150629020 150629316 -154237 + AluSx SINE Alu 1 296 -16 257 246 58 0 chr11 150629757 150629826 -153727 + MER5A DNA MER1_type 115 187 -2 415 379 91 19 chr11 150633022 150633536 -150017 - L1MC4a LINE L1 -1880 5928 5378 229 251 126 71 chr11 150633704 150633887 -149666 + L2 LINE L2 3079 3271 -1 295 343 10 0 chr11 150634195 150634294 -149259 + MIR SINE MIR 162 261 -1 2507 73 0 13 chr11 150634435 150634750 -148803 + AluY SINE Alu 1 311 0 502 263 90 84 chr11 150634961 150635179 -148374 + L2 LINE L2 2925 3147 -166 2460 176 14 40 chr11 150635179 150635679 -147874 - L1MB1 LINE L1 -1 6167 5681 502 263 90 84 chr11 150635679 150635806 -147747 + L2 LINE L2 3147 3272 -41 327 264 121 7 chr11 150636967 150637107 -146446 + MIR SINE MIR 107 262 0 2087 102 0 0 chr11 150637933 150638199 -145354 + AluSg SINE Alu 37 302 -8 185 192 0 39 chr11 150638754 150638806 -144747 + (CATATA)n Simple_repeat Simple_repeat 6 55 0 23 0 0 0 chr11 150639857 150639880 -143673 + AT_rich Low_complexity Low_complexity 1 23 0 950 285 97 34 chr11 150641006 150641676 -141877 - L1ME4a LINE L1 -27 6094 5383 189 350 126 7 chr11 150643350 150643493 -140060 - MIR SINE MIR -62 200 41 23 0 0 0 chr11 150644233 150644256 -139297 + AT_rich Low_complexity Low_complexity 1 23 0 1877 252 16 9 chr11 150645262 150645698 -137855 - LTR40a LTR ERVL -2 517 79 1722 155 0 29 chr11 150645700 150645978 -137575 + AluJo SINE Alu 1 270 -42 975 273 62 8 chr11 150646010 150646391 -137162 - HERVL40 LTR ERVL -36 5494 2692 423 355 15 15 chr11 150646175 150646443 -137110 - MER89-int LTR ERV1 -290 6511 6244 * 2902 281 36 16 chr11 150646949 150647909 -135644 - HERVL40 LTR ERVL -667 4617 2052 1773 271 28 20 chr11 150647908 150648417 -135136 - HERVL40 LTR ERVL -1676 3854 3342 * 513 293 62 46 chr11 150648449 150648672 -134881 - HERVL40 LTR ERVL -4212 1318 1040 1610 223 39 11 chr11 150648672 150649027 -134526 + MLT1A1 LTR MaLR 1 365 0 513 293 62 46 chr11 150649027 150649135 -134418 - HERVL40 LTR ERVL -4490 1040 935 362 305 84 44 chr11 150649144 150649442 -134111 - HERVL40 LTR ERVL -5220 310 1 1501 241 55 35 chr11 150649444 150649904 -133649 - LTR40a LTR ERVL 0 462 6 243 297 54 14 chr11 150650012 150650086 -133467 - L2 LINE L2 -40 3232 3156 527 259 45 33 chr11 150650099 150650306 -133247 - MIR SINE MIR 0 262 16 297 340 105 6 chr11 150650418 150650580 -132973 - L2 LINE L2 -174 3098 2921 41 48 0 0 chr11 150651837 150651899 -131654 + AT_rich Low_complexity Low_complexity 1 62 0 195 329 76 0 chr11 150651939 150652018 -131535 - MIR SINE MIR -62 146 62 1480 267 150 38 chr11 150652369 150653443 -130110 - L2 LINE L2 0 3313 2142 1564 193 24 0 chr11 150655968 150656263 -127290 - AluJb SINE Alu -10 302 1 584 291 102 51 chr11 150657097 150657609 -125944 - L1M4 LINE L1 -382 5796 5259 408 267 38 9 chr11 150657722 150657827 -125726 + MIR SINE MIR 9 116 -146 1270 157 0 42 chr11 150657862 150657918 -125635 + AluJo SINE Alu 86 143 -169 2317 73 13 10 chr11 150657918 150658218 -125335 + AluY SINE Alu 1 301 -10 1270 157 0 42 chr11 150658218 150658369 -125184 + AluJo SINE Alu 143 286 -26 213 65 0 0 chr11 150658369 150658400 -125153 + (CATA)n Simple_repeat Simple_repeat 2 32 0 250 282 14 0 chr11 150658410 150658481 -125072 + MIR SINE MIR 156 227 -35 217 200 22 0 chr11 150658484 150658529 -125024 + (TA)n Simple_repeat Simple_repeat 2 47 0 217 250 29 0 chr11 150659095 150659163 -124390 + (CAAA)n Simple_repeat Simple_repeat 2 71 0 205 306 32 81 chr11 150659599 150659692 -123861 + L2 LINE L2 3133 3220 -52 2115 119 10 0 chr11 150659692 150659995 -123558 + AluSx SINE Alu 1 306 -6 205 306 32 81 chr11 150659995 150660025 -123528 + L2 LINE L2 3220 3250 -22 2266 179 37 2 chr11 150660025 150660434 -123119 + Tigger2a DNA MER2_type 12 434 0 207 0 0 0 chr11 150660440 150660463 -123090 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 650 313 62 0 chr11 150660759 150660954 -122599 + MIR SINE MIR 23 229 -33 2203 107 3 0 chr11 150661340 150661630 -121923 - AluSc SINE Alu -18 291 1 753 85 0 0 chr11 150662234 150662340 -121213 + (TTCC)n Simple_repeat Simple_repeat 2 107 0 281 320 41 25 chr11 150665122 150665244 -118309 - MIR3 SINE MIR -49 159 36 318 340 83 6 chr11 150666791 150666947 -116606 - L2 LINE L2 0 3272 3105 2193 123 0 3 chr11 150667881 150668191 -115362 + AluSx SINE Alu 1 309 -3 2226 120 0 0 chr11 150669527 150669828 -113725 - AluSx SINE Alu -11 301 1 944 280 60 37 chr11 150669865 150670247 -113306 - MLT1J1 LTR MaLR -55 391 1 23 0 0 0 chr11 150670920 150670943 -112610 + AT_rich Low_complexity Low_complexity 1 23 0 621 311 65 44 chr11 150671551 150671985 -111568 - MLT1J1 LTR MaLR -3 443 1 249 323 54 11 chr11 150671986 150672079 -111474 + MIR SINE MIR 156 252 -10 717 289 36 25 chr11 150672702 150672979 -110574 + L2 LINE L2 3029 3308 -5 435 309 52 46 chr11 150673182 150673376 -110177 - MIR SINE MIR -44 218 24 533 55 14 0 chr11 150673513 150673586 -109967 + (CTATT)n Simple_repeat Simple_repeat 2 75 0 260 351 0 0 chr11 150673982 150674059 -109494 - L2 LINE L2 -2 3270 3194 2008 197 28 3 chr11 150674098 150674454 -109099 - MLT1A1 LTR MaLR 0 365 1 542 294 64 49 chr11 150675764 150676152 -107401 - MLT1I LTR MaLR 0 409 16 239 143 0 18 chr11 150676640 150676696 -106857 + (TG)n Simple_repeat Simple_repeat 2 56 0 187 54 54 0 chr11 150677353 150677390 -106163 + T-rich Low_complexity Low_complexity 2 40 0 237 355 53 102 chr11 150677589 150678059 -105494 - L2 LINE L2 -2 3270 2824 2136 180 42 42 chr11 150678186 150678620 -104933 + Tigger2a DNA MER2_type 1 434 0 320 276 35 65 chr11 150679093 150679263 -104290 - MER5B DNA MER1_type -18 171 1 433 319 160 42 chr11 150679340 150679879 -103674 - L2 LINE L2 -642 2672 2027 2179 121 0 7 chr11 150679879 150680184 -103369 + AluSq SINE Alu 9 311 -2 433 319 160 42 chr11 150680184 150680356 -103197 - L2 LINE L2 -1287 2027 1877 212 359 150 7 chr11 150680808 150681095 -102458 + L2 LINE L2 2164 2491 -823 224 262 120 58 chr11 150681660 150681803 -101750 - L2 LINE L2 -358 2956 2823 2639 186 15 7 chr11 150681803 150682260 -101293 - LOR1b LTR ERV1 0 461 1 224 262 120 58 chr11 150682260 150682425 -101128 - L2 LINE L2 -491 2823 2629 431 262 98 0 chr11 150682685 150682867 -100686 - MIR SINE MIR -58 204 1 219 214 18 18 chr11 150683783 150683839 -99714 + T-rich Low_complexity Low_complexity 4 59 0 204 250 39 0 chr11 150684076 150684128 -99425 + C-rich Low_complexity Low_complexity 4 57 0 272 367 92 8 chr11 150686831 150686951 -96602 - L2 LINE L2 -1 3271 3142 186 310 35 35 chr11 150687065 150687152 -96401 - L2 LINE L2 -284 2988 2902 2022 168 112 28 chr11 150687513 150687906 -95647 - MSTB LTR MaLR 0 426 1 300 120 0 0 chr11 150687908 150687958 -95595 + (CA)n Simple_repeat Simple_repeat 1 50 0 189 342 13 25 chr11 150688311 150688390 -95163 - L2 LINE L2 -527 2787 2710 419 263 206 6 chr11 150688865 150689040 -94513 + MIR SINE MIR 45 254 -8 445 165 241 23 chr11 150689335 150689397 -94156 - MER5A DNA MER1_type -21 168 121 1702 185 20 0 chr11 150689397 150689695 -93858 - AluJo SINE Alu -8 304 1 445 165 241 23 chr11 150689695 150689765 -93788 - MER5A DNA MER1_type -68 121 7 390 42 0 0 chr11 150690737 150690785 -92768 + (TC)n Simple_repeat Simple_repeat 1 48 0 344 59 20 0 chr11 150690784 150690835 -92718 + (CA)n Simple_repeat Simple_repeat 1 52 0 * 183 280 47 75 chr11 150691264 150691371 -92182 + MER5B DNA MER1_type 19 122 -56 207 174 87 22 chr11 150691469 150691515 -92038 + MIR SINE MIR 89 137 -71 * 208 291 134 45 chr11 150691510 150691644 -91909 + L2 LINE L2 3125 3270 -2 230 185 19 0 chr11 150691645 150691699 -91854 + (TGAA)n Simple_repeat Simple_repeat 1 55 0 634 271 107 60 chr11 150693006 150693353 -90200 + MLT1I LTR MaLR 47 409 0 279 215 0 0 chr11 150694962 150695027 -88526 + T-rich Low_complexity Low_complexity 1 65 0 565 254 149 15 chr11 150697711 150697912 -85641 - MIR SINE MIR -14 248 21 180 250 71 60 chr11 150698188 150698272 -85281 + L2 LINE L2 3182 3266 -47 209 316 0 0 chr11 150698309 150698366 -85187 + GA-rich Low_complexity Low_complexity 1 57 0 330 345 176 23 chr11 150699071 150699634 -83919 - L2 LINE L2 -911 2403 1755 306 234 0 0 chr11 150699813 150699890 -83663 - L1MB8 LINE L1 -1 6177 6101 5515 150 29 25 chr11 150699893 150700983 -82570 - L1MA4A LINE L1 -5 6298 5212 7508 172 27 6 chr11 150701134 150702025 -81528 - L1 LINE L1 -837 5309 4375 387 0 0 0 chr11 150702025 150702068 -81485 + (TTTTA)n Simple_repeat Simple_repeat 5 47 0 7508 172 27 6 chr11 150702068 150702632 -80921 - L1 LINE L1 -1771 4375 3824 3852 249 70 47 chr11 150702623 150705745 -77808 - L1MB7 LINE L1 -62 6620 3454 * 1143 221 49 113 chr11 150705724 150706231 -77322 - L1MB7 LINE L1 -3490 3154 2747 * 2555 166 29 16 chr11 150706231 150706683 -76870 - L1PA16 LINE L1 -3 6163 5706 1143 221 49 113 chr11 150706683 150706977 -76576 - L1MB7 LINE L1 -3897 2747 2436 1707 259 75 31 chr11 150706998 150708022 -75531 - L1MB7 LINE L1 -4713 1933 885 312 295 16 16 chr11 150708569 150708698 -74855 - L1MB7 LINE L1 -6337 205 77 423 147 0 0 chr11 150710095 150710197 -73356 + (TTG)n Simple_repeat Simple_repeat 1 102 0 2236 92 3 10 chr11 150710204 150710509 -73044 - AluSc SINE Alu -5 304 2 976 223 18 2 chr11 150710711 150710997 -72556 + MER2 DNA MER2_type 8 340 -5 295 265 123 85 chr11 150711285 150711710 -71843 - MLT1I LTR MaLR -7 426 1 736 223 80 6 chr11 150711812 150711987 -71566 + MER5A DNA MER1_type 2 189 0 415 258 8 33 chr11 150711995 150712115 -71438 - MER5B DNA MER1_type 0 178 62 422 313 141 1 chr11 150712311 150712524 -71029 + MIR SINE MIR 18 261 -1 3928 196 57 40 chr11 150713738 150715457 -68096 - L1MCb LINE L1 -4511 2053 365 183 42 0 0 chr11 150715457 150715481 -68072 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3928 196 57 40 chr11 150715481 150715584 -67969 - L1MCb LINE L1 -6199 365 265 2260 51 34 0 chr11 150715584 150715880 -67673 - L1PA4 LINE L1 -2 6153 5848 3928 196 57 40 chr11 150715880 150715910 -67643 - L1MCb LINE L1 -6299 265 46 30 27 0 0 chr11 150716628 150716665 -66888 + AT_rich Low_complexity Low_complexity 1 37 0 664 256 100 69 chr11 150716835 150717195 -66358 - L2 LINE L2 -134 3179 2809 1451 257 85 20 chr11 150717623 150718129 -65424 - L2 LINE L2 -533 2781 2243 211 315 100 60 chr11 150718467 150718915 -64638 + L2 LINE L2 1897 2362 -952 216 293 17 0 chr11 150719288 150719346 -64207 + L2 LINE L2 3245 3303 -10 270 256 33 33 chr11 150720321 150720411 -63142 - MIR3 SINE MIR -11 197 108 248 320 19 10 chr11 150721722 150721825 -61728 + L2 LINE L2 3204 3307 -6 204 40 0 0 chr11 150722028 150722053 -61500 + (TG)n Simple_repeat Simple_repeat 1 25 0 188 253 80 27 chr11 150722926 150723001 -60552 - MIR SINE MIR -149 113 35 403 308 38 49 chr11 150723310 150723420 -60133 + MIR3 SINE MIR 25 134 -74 2318 146 75 27 chr11 150723420 150723832 -59721 + MSTB1 LTR MaLR 1 432 0 403 308 38 49 chr11 150723832 150723906 -59647 + MIR3 SINE MIR 134 207 -1 421 274 7 15 chr11 150724850 150724985 -58568 + MIR SINE MIR 88 221 -41 381 337 53 47 chr11 150725404 150725745 -57808 + L2 LINE L2 2902 3244 -69 516 134 0 24 chr11 150725792 150725874 -57679 - FLAM_A SINE Alu -4 138 59 196 327 26 26 chr11 150726162 150726275 -57278 + MIR SINE MIR 84 196 -66 1690 95 6 117 chr11 150726308 150726625 -56928 - AluSx SINE Alu -19 293 12 548 295 97 23 chr11 150727192 150727409 -56144 + MIR SINE MIR 24 256 -6 186 71 0 0 chr11 150727561 150727589 -55964 + (TG)n Simple_repeat Simple_repeat 1 28 0 339 78 0 0 chr11 150727589 150727640 -55913 + (GA)n Simple_repeat Simple_repeat 2 52 0 470 256 101 12 chr11 150728111 150728279 -55274 + MIR SINE MIR 11 193 -69 238 353 86 17 chr11 150729205 150729321 -54232 + L2 LINE L2 3134 3257 -15 1020 133 0 0 chr11 150730331 150730546 -53007 + (TG)n Simple_repeat Simple_repeat 1 215 0 2248 149 8 3 chr11 150731119 150731487 -52066 + L1P LINE L1 3374 3743 -2403 577 236 58 52 chr11 150732415 150732589 -50964 + MIR SINE MIR 79 253 -9 210 167 0 0 chr11 150732712 150732748 -50805 + A-rich Low_complexity Low_complexity 1 36 0 487 108 45 0 chr11 150733145 150733256 -50297 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 316 311 145 21 chr11 150733273 150733466 -50087 - MIR SINE MIR -16 246 30 252 86 0 0 chr11 150735151 150735186 -48367 + (T)n Simple_repeat Simple_repeat 1 35 0 229 295 53 0 chr11 150736818 150736913 -46640 - L2 LINE L2 -56 3216 3117 219 296 74 0 chr11 150737452 150737533 -46020 + MIR SINE MIR 78 164 -98 740 282 79 0 chr11 150737568 150737770 -45783 - MIR SINE MIR -32 230 13 315 0 0 0 chr11 150739122 150739157 -44396 + (TG)n Simple_repeat Simple_repeat 2 36 0 461 294 30 12 chr11 150739462 150739643 -43910 - MIR SINE MIR -47 215 33 1828 177 10 0 chr11 150740287 150740587 -42966 + AluSx SINE Alu 2 304 -8 180 111 0 0 chr11 150741975 150742002 -41551 + (TG)n Simple_repeat Simple_repeat 1 27 0 360 59 0 0 chr11 150742002 150742053 -41500 + (GA)n Simple_repeat Simple_repeat 2 52 0 230 294 130 33 chr11 150742116 150742300 -41253 + MIR SINE MIR 49 250 -12 247 175 0 0 chr11 150742819 150742859 -40694 + L2 LINE L2 3182 3221 -92 204 167 0 0 chr11 150742902 150742950 -40603 + (TGAA)n Simple_repeat Simple_repeat 3 50 0 1492 269 101 9 chr11 150743207 150743654 -39899 + Tigger8 DNA MER2_type 75 562 -104 306 182 0 0 chr11 150747853 150747919 -35634 + (AATTG)n Simple_repeat Simple_repeat 3 68 0 21 36 0 0 chr11 150748200 150748228 -35325 + AT_rich Low_complexity Low_complexity 1 28 0 1554 221 52 3 chr11 150749317 150749665 -33888 - MLT1A1 LTR MaLR 0 365 1 201 147 0 0 chr11 150750468 150750502 -33051 + (GAAA)n Simple_repeat Simple_repeat 4 37 0 222 37 0 0 chr11 150750651 150750678 -32875 + (TCTA)n Simple_repeat Simple_repeat 3 29 0 1172 243 46 86 chr11 150752802 150753301 -30252 - MLT1D LTR MaLR 0 505 27 1633 164 51 34 chr11 150753310 150753602 -29951 - AluJb SINE Alu -15 297 1 1591 255 35 72 chr11 150753638 150754152 -29401 - MLT1D-int LTR MaLR 0 1371 877 2372 224 41 44 chr11 150754232 150755005 -28548 - MLT1D-int LTR MaLR -484 887 1 1488 223 20 47 chr11 150755005 150755413 -28140 - MLT2C1 LTR ERVL 0 397 1 586 155 21 0 chr11 150760981 150761078 -22475 + L1MB1 LINE L1 5700 5798 -370 1615 139 15 0 chr11 150761078 150761342 -22211 + L1MA5A LINE L1 6017 6287 -10 1733 159 78 0 chr11 150761368 150761689 -21864 + L1MB1 LINE L1 5822 6167 -1 626 249 175 0 chr11 150762545 150762734 -20819 - MER58A DNA MER1_type 0 224 3 247 276 81 63 chr11 150762779 150762953 -20600 - L2 LINE L2 -19 3294 3118 180 361 24 0 chr11 150763069 150763152 -20401 + MIR SINE MIR 110 194 -68 312 338 60 6 chr11 150763868 150764040 -19513 - MIR SINE MIR -63 145 10 623 203 0 8 chr11 150764125 150764248 -19305 - FLAM_C SINE Alu -16 127 6 293 240 27 33 chr11 150764252 150764402 -19151 - Charlie7 DNA MER1_type -37 2575 2427 188 429 0 0 chr11 150765670 150765775 -17778 + MIR SINE MIR 3 107 -155 212 335 135 5 chr11 150765853 150766038 -17515 - L3 LINE CR1 -127 1450 1242 436 316 62 19 chr11 150766067 150766323 -17230 - L3 LINE CR1 -489 1088 822 2459 52 28 0 chr11 150767802 150768090 -15463 + AluY SINE Alu 1 296 -15 500 179 0 0 chr11 150768163 150768241 -15312 + FLAM_A SINE Alu 30 107 -35 248 208 0 14 chr11 150768244 150768316 -15237 + (TA)n Simple_repeat Simple_repeat 1 71 0 966 117 39 0 chr11 150768371 150768525 -15028 - HSMAR2 DNA Mariner -1 1301 1142 2212 161 113 30 chr11 150768525 150768984 -14569 - MER61D LTR ERV1 0 501 5 11562 163 55 20 chr11 150768994 150772394 -11159 - MER61D-int LTR ERV1 0 6929 2108 2465 84 0 0 chr11 150772394 150772693 -10860 + AluY SINE Alu 1 299 -12 11562 163 55 20 chr11 150772693 150772968 -10585 - MER61D-int LTR ERV1 -4821 2108 1844 4653 177 33 40 chr11 150772965 150774417 -9136 - MER61D-int LTR ERV1 -390 4827 266 * 2372 160 111 7 chr11 150774733 150775183 -8370 - MER61D LTR ERV1 0 501 5 7051 132 28 11 chr11 150775193 150776319 -7234 - HSMAR2 DNA Mariner -157 1145 1 739 281 29 0 chr11 150776328 150776538 -7015 - MIR SINE MIR -14 248 33 1602 167 7 61 chr11 150777479 150777773 -5780 + AluSx SINE Alu 21 298 -14 1677 174 3 7 chr11 150777839 150778133 -5420 - AluJo SINE Alu -19 293 1 181 178 137 110 chr11 150778199 150778272 -5281 + L2 LINE L2 3239 3313 0 463 369 125 61 chr11 150778390 150779739 -3814 + L2 LINE L2 1528 2963 -351 196 281 0 16 chr11 150780065 150780129 -3424 - L2 LINE L2 -1 3312 3250 2485 133 25 10 chr11 150780282 150780679 -2874 - MER57A LTR ERV1 0 403 1 186 43 0 0 chr11 150781255 150781278 -2275 + (TG)n Simple_repeat Simple_repeat 1 23 0 227 246 36 55 chr11 150782285 150782395 -1158 + MLT1J2 LTR MaLR 337 444 -6 208 125 0 0 chr11 150783377 150783409 -144 + L2 LINE L2 3263 3294 -19